Query 002308
Match_columns 938
No_of_seqs 543 out of 4714
Neff 10.2
Searched_HMMs 46136
Date Thu Mar 28 21:10:10 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002308.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/002308hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4658 Apoptotic ATPase [Sign 100.0 1.2E-82 2.6E-87 741.4 47.5 619 3-649 15-652 (889)
2 PLN03210 Resistant to P. syrin 100.0 4.7E-64 1E-68 621.7 47.2 721 106-916 133-908 (1153)
3 PF00931 NB-ARC: NB-ARC domain 100.0 1.9E-41 4.1E-46 361.1 14.2 277 155-438 1-284 (287)
4 PLN00113 leucine-rich repeat r 100.0 8.7E-30 1.9E-34 317.9 15.6 374 515-913 140-535 (968)
5 PLN00113 leucine-rich repeat r 100.0 3.7E-29 8E-34 312.3 16.9 362 515-914 93-465 (968)
6 KOG4194 Membrane glycoprotein 99.9 1.8E-26 3.9E-31 240.9 2.3 362 512-912 75-450 (873)
7 KOG0444 Cytoskeletal regulator 99.9 2.3E-27 5E-32 248.9 -5.4 277 515-823 55-334 (1255)
8 KOG0444 Cytoskeletal regulator 99.9 1.5E-27 3.2E-32 250.3 -7.2 338 515-916 32-377 (1255)
9 KOG4194 Membrane glycoprotein 99.9 1.7E-25 3.6E-30 233.8 5.8 380 498-914 35-429 (873)
10 KOG0472 Leucine-rich repeat pr 99.9 3.6E-27 7.8E-32 235.6 -9.0 351 516-913 69-540 (565)
11 PLN03210 Resistant to P. syrin 99.9 3.5E-21 7.5E-26 239.9 19.2 321 515-894 589-910 (1153)
12 KOG0472 Leucine-rich repeat pr 99.8 5.1E-24 1.1E-28 213.3 -11.8 359 515-912 45-469 (565)
13 KOG0618 Serine/threonine phosp 99.8 4.3E-23 9.3E-28 227.9 -7.5 275 516-826 46-331 (1081)
14 KOG0618 Serine/threonine phosp 99.7 2.4E-20 5.1E-25 206.5 -5.6 358 564-938 41-457 (1081)
15 PRK15387 E3 ubiquitin-protein 99.7 1.2E-16 2.6E-21 184.0 12.7 258 568-914 201-458 (788)
16 PRK15387 E3 ubiquitin-protein 99.6 1.5E-14 3.2E-19 166.9 14.1 242 508-816 215-457 (788)
17 PRK15370 E3 ubiquitin-protein 99.6 4.7E-15 1E-19 172.4 8.7 98 568-676 178-275 (754)
18 PRK15370 E3 ubiquitin-protein 99.5 1.1E-14 2.4E-19 169.3 10.0 242 517-815 180-426 (754)
19 KOG4237 Extracellular matrix p 99.5 1.2E-15 2.7E-20 153.6 1.4 272 497-793 49-358 (498)
20 KOG0617 Ras suppressor protein 99.5 1.3E-15 2.8E-20 135.4 -4.9 152 515-676 33-186 (264)
21 KOG0617 Ras suppressor protein 99.5 1.5E-15 3.3E-20 134.9 -5.1 136 564-706 52-188 (264)
22 KOG4237 Extracellular matrix p 99.4 5.5E-15 1.2E-19 149.0 -5.3 289 524-839 55-357 (498)
23 cd00116 LRR_RI Leucine-rich re 99.4 1.5E-14 3.2E-19 157.1 -2.6 91 718-815 189-289 (319)
24 PRK00411 cdc6 cell division co 99.4 2.2E-10 4.7E-15 127.8 30.6 319 147-483 27-376 (394)
25 PRK04841 transcriptional regul 99.4 2.7E-11 5.9E-16 151.1 25.4 294 148-492 12-332 (903)
26 cd00116 LRR_RI Leucine-rich re 99.4 1.4E-13 3.1E-18 149.4 2.9 92 717-815 216-318 (319)
27 KOG4658 Apoptotic ATPase [Sign 99.2 1.8E-12 4E-17 153.3 2.3 323 535-911 520-856 (889)
28 TIGR02928 orc1/cdc6 family rep 99.2 9.1E-09 2E-13 113.6 29.7 303 148-468 13-351 (365)
29 TIGR03015 pepcterm_ATPase puta 99.2 1.1E-09 2.4E-14 115.3 21.3 183 176-363 42-242 (269)
30 PF01637 Arch_ATPase: Archaeal 99.2 1.4E-10 3.1E-15 119.6 11.7 195 152-358 1-233 (234)
31 COG2909 MalT ATP-dependent tra 99.1 4.4E-09 9.6E-14 118.0 22.0 296 148-491 17-337 (894)
32 PF05729 NACHT: NACHT domain 99.1 1.2E-09 2.5E-14 105.9 13.1 144 178-326 1-163 (166)
33 PRK00080 ruvB Holliday junctio 99.1 2.2E-09 4.7E-14 115.6 15.7 278 149-467 24-310 (328)
34 TIGR00635 ruvB Holliday juncti 99.0 4.3E-09 9.3E-14 112.8 15.2 275 150-466 4-288 (305)
35 KOG1909 Ran GTPase-activating 99.0 5.7E-11 1.2E-15 119.0 0.0 242 564-815 26-309 (382)
36 PTZ00112 origin recognition co 99.0 8.3E-08 1.8E-12 108.8 22.9 213 149-363 754-986 (1164)
37 KOG3207 Beta-tubulin folding c 98.9 1.8E-10 3.9E-15 118.6 -1.2 139 722-888 197-337 (505)
38 KOG1909 Ran GTPase-activating 98.9 4.4E-11 9.5E-16 119.8 -6.0 258 587-889 25-310 (382)
39 KOG0532 Leucine-rich repeat (L 98.9 7.7E-11 1.7E-15 125.0 -4.7 110 564-677 94-203 (722)
40 PRK06893 DNA replication initi 98.9 7.5E-08 1.6E-12 97.6 16.2 155 177-362 39-206 (229)
41 COG3899 Predicted ATPase [Gene 98.8 8.9E-08 1.9E-12 114.5 19.3 265 152-430 2-333 (849)
42 COG2256 MGS1 ATPase related to 98.8 2.4E-08 5.2E-13 102.9 11.6 155 174-355 45-208 (436)
43 KOG1259 Nischarin, modulator o 98.8 4.9E-10 1.1E-14 109.3 -1.6 90 718-822 325-416 (490)
44 KOG0532 Leucine-rich repeat (L 98.8 1.7E-10 3.7E-15 122.5 -5.7 154 512-677 95-248 (722)
45 COG4886 Leucine-rich repeat (L 98.8 3.8E-09 8.1E-14 118.1 3.5 182 565-799 113-295 (394)
46 KOG3207 Beta-tubulin folding c 98.7 5.2E-09 1.1E-13 108.1 2.7 184 515-703 121-313 (505)
47 TIGR03420 DnaA_homol_Hda DnaA 98.7 2.9E-07 6.4E-12 94.0 15.0 170 155-361 22-203 (226)
48 PF13401 AAA_22: AAA domain; P 98.7 5.6E-08 1.2E-12 89.7 8.3 118 176-295 3-125 (131)
49 PRK14961 DNA polymerase III su 98.7 1E-06 2.2E-11 96.1 19.1 193 150-359 16-220 (363)
50 COG1474 CDC6 Cdc6-related prot 98.7 2.8E-06 6E-11 91.3 21.3 174 149-327 16-204 (366)
51 PRK13342 recombination factor 98.6 2.7E-07 5.9E-12 102.6 13.9 178 150-361 12-198 (413)
52 PF14580 LRR_9: Leucine-rich r 98.6 6.1E-09 1.3E-13 98.6 0.7 107 536-652 17-126 (175)
53 COG4886 Leucine-rich repeat (L 98.6 1.9E-08 4.2E-13 112.4 4.8 148 520-677 98-246 (394)
54 KOG1259 Nischarin, modulator o 98.6 4.7E-09 1E-13 102.6 -1.1 132 568-707 284-415 (490)
55 PRK07003 DNA polymerase III su 98.6 1.2E-06 2.5E-11 99.4 17.3 179 150-358 16-220 (830)
56 PF14580 LRR_9: Leucine-rich r 98.6 3.2E-08 6.8E-13 93.8 4.2 133 565-702 16-151 (175)
57 PRK14949 DNA polymerase III su 98.6 1.2E-06 2.5E-11 101.5 17.4 184 150-360 16-221 (944)
58 PTZ00202 tuzin; Provisional 98.6 6.5E-06 1.4E-10 86.9 21.0 168 144-325 256-433 (550)
59 PF05496 RuvB_N: Holliday junc 98.6 1.3E-06 2.8E-11 84.4 14.6 182 149-363 23-225 (233)
60 PRK12402 replication factor C 98.6 1.4E-06 3.1E-11 95.1 16.8 198 150-358 15-225 (337)
61 PLN03150 hypothetical protein; 98.6 8.5E-08 1.8E-12 112.0 7.3 107 569-675 419-527 (623)
62 PRK14960 DNA polymerase III su 98.6 1.9E-06 4.1E-11 96.7 16.9 193 150-358 15-218 (702)
63 PF13191 AAA_16: AAA ATPase do 98.5 1.4E-07 3E-12 93.1 7.4 51 151-204 1-51 (185)
64 PRK04195 replication factor C 98.5 8.5E-06 1.8E-10 92.6 22.7 248 149-438 13-271 (482)
65 PRK14963 DNA polymerase III su 98.5 3.5E-07 7.7E-12 102.6 11.2 196 150-357 14-215 (504)
66 PRK05564 DNA polymerase III su 98.5 1.9E-06 4.1E-11 92.3 16.3 180 150-359 4-190 (313)
67 PRK12323 DNA polymerase III su 98.5 1.8E-06 3.8E-11 96.7 15.9 197 150-359 16-225 (700)
68 cd00009 AAA The AAA+ (ATPases 98.5 8.7E-07 1.9E-11 83.8 12.0 124 153-296 1-130 (151)
69 TIGR02903 spore_lon_C ATP-depe 98.5 2.9E-05 6.4E-10 90.0 26.5 203 150-362 154-398 (615)
70 PLN03025 replication factor C 98.5 3E-06 6.6E-11 90.9 16.5 183 150-357 13-198 (319)
71 PRK14957 DNA polymerase III su 98.5 4.3E-06 9.2E-11 94.1 17.7 183 150-359 16-221 (546)
72 PRK00440 rfc replication facto 98.5 6.4E-06 1.4E-10 89.2 18.3 182 150-358 17-202 (319)
73 PRK08727 hypothetical protein; 98.5 5.8E-06 1.3E-10 84.0 16.6 149 177-356 41-201 (233)
74 PF13173 AAA_14: AAA domain 98.5 9.5E-07 2.1E-11 80.6 9.7 120 177-318 2-127 (128)
75 PRK07994 DNA polymerase III su 98.5 4.3E-06 9.3E-11 95.5 17.0 196 149-360 15-221 (647)
76 PRK06645 DNA polymerase III su 98.4 7.7E-06 1.7E-10 91.5 18.5 194 150-356 21-226 (507)
77 KOG2028 ATPase related to the 98.4 2.7E-06 5.9E-11 86.0 13.2 159 174-354 159-331 (554)
78 PRK14956 DNA polymerase III su 98.4 2.8E-06 6.1E-11 92.8 14.5 196 150-357 18-220 (484)
79 PRK14964 DNA polymerase III su 98.4 7.4E-06 1.6E-10 90.8 17.5 181 150-356 13-214 (491)
80 PRK14962 DNA polymerase III su 98.4 6.9E-06 1.5E-10 91.6 17.4 187 150-363 14-223 (472)
81 PRK05896 DNA polymerase III su 98.4 7.1E-06 1.5E-10 92.3 17.5 192 149-356 15-217 (605)
82 TIGR02397 dnaX_nterm DNA polym 98.4 1.2E-05 2.5E-10 88.5 19.2 184 150-360 14-219 (355)
83 PLN03150 hypothetical protein; 98.4 4.7E-07 1E-11 105.9 7.6 109 539-653 419-529 (623)
84 PRK08084 DNA replication initi 98.4 1.4E-05 3.1E-10 81.3 17.4 154 177-361 45-211 (235)
85 PRK08691 DNA polymerase III su 98.4 6.3E-06 1.4E-10 93.6 15.7 180 150-359 16-220 (709)
86 KOG4341 F-box protein containi 98.4 2.1E-08 4.5E-13 103.2 -3.6 135 779-937 318-456 (483)
87 PRK09112 DNA polymerase III su 98.4 9.1E-06 2E-10 87.1 15.9 198 148-360 21-241 (351)
88 KOG0531 Protein phosphatase 1, 98.4 5.4E-08 1.2E-12 108.7 -1.2 218 564-815 91-316 (414)
89 KOG4341 F-box protein containi 98.4 2.1E-08 4.7E-13 103.1 -4.0 143 756-919 267-419 (483)
90 PRK14958 DNA polymerase III su 98.4 9.3E-06 2E-10 91.6 16.6 183 150-358 16-219 (509)
91 KOG0531 Protein phosphatase 1, 98.4 4.2E-08 9.2E-13 109.6 -2.1 215 566-815 70-288 (414)
92 PRK07471 DNA polymerase III su 98.4 1.9E-05 4.2E-10 85.1 18.2 198 149-360 18-239 (365)
93 PRK07940 DNA polymerase III su 98.3 1.3E-05 2.8E-10 87.2 16.3 182 150-360 5-214 (394)
94 PRK08903 DnaA regulatory inact 98.3 1.3E-05 2.9E-10 81.6 15.6 153 176-363 41-203 (227)
95 PRK14951 DNA polymerase III su 98.3 1.5E-05 3.4E-10 90.9 17.5 197 150-359 16-225 (618)
96 TIGR00678 holB DNA polymerase 98.3 1.9E-05 4.2E-10 77.7 16.1 90 255-354 95-186 (188)
97 KOG2227 Pre-initiation complex 98.3 1.6E-05 3.4E-10 84.0 15.9 214 148-363 148-376 (529)
98 PRK13341 recombination factor 98.3 7E-06 1.5E-10 96.0 14.8 173 150-355 28-213 (725)
99 PRK14969 DNA polymerase III su 98.3 1.3E-05 2.9E-10 91.1 16.4 181 150-356 16-217 (527)
100 PF13855 LRR_8: Leucine rich r 98.3 7.4E-07 1.6E-11 69.0 4.4 58 569-626 2-60 (61)
101 cd01128 rho_factor Transcripti 98.3 1E-06 2.2E-11 89.3 6.4 91 176-267 15-114 (249)
102 PRK14955 DNA polymerase III su 98.3 1.2E-05 2.6E-10 88.8 15.3 199 150-358 16-227 (397)
103 KOG0989 Replication factor C, 98.3 6.9E-06 1.5E-10 81.8 11.7 185 148-353 34-224 (346)
104 PRK09087 hypothetical protein; 98.3 1.8E-05 3.8E-10 79.7 15.0 143 177-360 44-196 (226)
105 PF13855 LRR_8: Leucine rich r 98.3 7.2E-07 1.6E-11 69.1 4.0 59 592-650 1-60 (61)
106 PRK05642 DNA replication initi 98.3 2.5E-05 5.4E-10 79.4 16.3 156 177-363 45-212 (234)
107 KOG2120 SCF ubiquitin ligase, 98.3 2.3E-08 5.1E-13 97.9 -5.9 81 569-649 186-270 (419)
108 PRK09111 DNA polymerase III su 98.2 2.6E-05 5.6E-10 89.4 16.9 198 149-359 23-233 (598)
109 PF00308 Bac_DnaA: Bacterial d 98.2 5.3E-05 1.2E-09 75.9 17.2 185 152-359 11-208 (219)
110 PRK14952 DNA polymerase III su 98.2 4.6E-05 9.9E-10 86.8 18.3 197 150-362 13-223 (584)
111 PRK07133 DNA polymerase III su 98.2 4.4E-05 9.6E-10 87.9 18.3 189 150-357 18-217 (725)
112 PRK09376 rho transcription ter 98.2 4.1E-06 8.8E-11 88.2 8.7 101 161-267 158-267 (416)
113 COG3903 Predicted ATPase [Gene 98.2 2.4E-06 5.1E-11 89.3 6.8 235 176-421 13-257 (414)
114 COG2255 RuvB Holliday junction 98.2 9.2E-05 2E-09 73.2 17.2 268 150-470 26-314 (332)
115 COG5238 RNA1 Ran GTPase-activa 98.2 1.1E-07 2.3E-12 92.1 -2.9 152 717-888 152-314 (388)
116 PRK14087 dnaA chromosomal repl 98.2 6.5E-05 1.4E-09 83.8 18.0 171 177-363 141-323 (450)
117 PRK14970 DNA polymerase III su 98.2 7.4E-05 1.6E-09 82.3 18.2 181 150-356 17-206 (367)
118 PRK14959 DNA polymerase III su 98.2 5E-05 1.1E-09 86.1 16.7 198 150-363 16-225 (624)
119 PRK08451 DNA polymerase III su 98.2 9E-05 2E-09 83.1 18.5 181 150-360 14-219 (535)
120 KOG2120 SCF ubiquitin ligase, 98.2 4.7E-08 1E-12 95.8 -6.4 138 687-855 230-373 (419)
121 PRK14953 DNA polymerase III su 98.2 0.00011 2.3E-09 82.6 19.2 184 150-360 16-221 (486)
122 TIGR01242 26Sp45 26S proteasom 98.1 3.3E-05 7.1E-10 84.6 14.5 180 148-353 120-328 (364)
123 PRK14950 DNA polymerase III su 98.1 9.4E-05 2E-09 85.8 19.0 196 150-360 16-222 (585)
124 PRK07764 DNA polymerase III su 98.1 8E-05 1.7E-09 88.4 18.0 191 150-356 15-218 (824)
125 KOG2543 Origin recognition com 98.1 0.00024 5.1E-09 73.3 18.7 168 149-325 5-192 (438)
126 KOG2982 Uncharacterized conser 98.1 8.7E-07 1.9E-11 87.2 1.1 83 721-813 198-288 (418)
127 PRK14954 DNA polymerase III su 98.1 0.00011 2.4E-09 84.4 17.9 196 150-354 16-223 (620)
128 PF05621 TniB: Bacterial TniB 98.1 8.7E-05 1.9E-09 75.6 14.7 203 150-356 34-258 (302)
129 PRK14971 DNA polymerase III su 98.1 0.00016 3.4E-09 83.7 18.7 180 150-356 17-219 (614)
130 PRK11331 5-methylcytosine-spec 98.1 2E-05 4.3E-10 85.2 10.3 120 150-281 175-298 (459)
131 PRK06305 DNA polymerase III su 98.0 0.00014 3E-09 81.2 17.3 179 150-356 17-219 (451)
132 PRK14948 DNA polymerase III su 98.0 0.00018 3.9E-09 83.2 18.6 196 150-359 16-222 (620)
133 COG5238 RNA1 Ran GTPase-activa 98.0 7.4E-07 1.6E-11 86.5 -1.0 241 566-815 28-314 (388)
134 CHL00181 cbbX CbbX; Provisiona 98.0 0.00031 6.8E-09 73.4 18.4 137 177-329 59-212 (287)
135 TIGR02880 cbbX_cfxQ probable R 98.0 0.00017 3.6E-09 75.6 16.0 134 178-327 59-209 (284)
136 PRK06647 DNA polymerase III su 98.0 0.00021 4.6E-09 81.6 18.0 193 150-358 16-219 (563)
137 PHA02544 44 clamp loader, smal 98.0 7.2E-05 1.6E-09 80.7 13.4 149 149-324 20-171 (316)
138 TIGR03345 VI_ClpV1 type VI sec 98.0 9.3E-05 2E-09 89.1 15.5 153 150-326 187-363 (852)
139 TIGR02881 spore_V_K stage V sp 98.0 0.00016 3.4E-09 75.2 15.1 162 151-328 7-193 (261)
140 PRK06620 hypothetical protein; 98.0 0.00021 4.5E-09 71.3 15.2 134 178-356 45-186 (214)
141 PRK14965 DNA polymerase III su 98.0 0.00019 4.2E-09 82.8 17.0 195 149-359 15-221 (576)
142 TIGR00767 rho transcription te 98.0 3.1E-05 6.7E-10 82.2 9.6 91 176-267 167-266 (415)
143 PRK03992 proteasome-activating 98.0 9.7E-05 2.1E-09 81.2 13.8 160 148-328 129-317 (389)
144 PRK05563 DNA polymerase III su 97.9 0.00039 8.4E-09 79.9 18.9 193 149-357 15-218 (559)
145 PF05673 DUF815: Protein of un 97.9 0.00043 9.3E-09 68.3 16.4 124 145-295 22-149 (249)
146 TIGR00362 DnaA chromosomal rep 97.9 0.00042 9.1E-09 77.3 18.8 159 177-357 136-308 (405)
147 PRK15386 type III secretion pr 97.9 3.7E-05 8.1E-10 82.1 9.3 61 566-632 50-111 (426)
148 COG0593 DnaA ATPase involved i 97.9 0.00074 1.6E-08 72.5 19.0 153 176-345 112-276 (408)
149 PF12799 LRR_4: Leucine Rich r 97.9 1.2E-05 2.7E-10 56.6 3.8 34 593-626 2-35 (44)
150 PRK12422 chromosomal replicati 97.9 0.00032 7E-09 78.0 17.0 153 177-351 141-305 (445)
151 PRK07399 DNA polymerase III su 97.9 0.00055 1.2E-08 72.5 17.4 198 150-360 4-222 (314)
152 PF14516 AAA_35: AAA-like doma 97.9 0.00087 1.9E-08 72.1 19.2 203 147-366 8-246 (331)
153 KOG1859 Leucine-rich repeat pr 97.9 1.8E-07 3.8E-12 102.7 -9.3 43 564-606 80-123 (1096)
154 KOG1859 Leucine-rich repeat pr 97.9 8.1E-07 1.8E-11 97.6 -4.5 16 514-529 108-123 (1096)
155 KOG2982 Uncharacterized conser 97.8 5.1E-06 1.1E-10 81.9 0.8 199 720-938 69-284 (418)
156 PF00004 AAA: ATPase family as 97.8 0.00012 2.6E-09 67.4 10.0 97 180-296 1-112 (132)
157 TIGR00763 lon ATP-dependent pr 97.8 0.00044 9.6E-09 83.3 17.3 165 150-326 320-505 (775)
158 PRK00149 dnaA chromosomal repl 97.8 0.00072 1.6E-08 76.4 17.8 160 176-357 147-320 (450)
159 PRK14088 dnaA chromosomal repl 97.8 0.00051 1.1E-08 76.7 16.3 159 177-356 130-302 (440)
160 PF12799 LRR_4: Leucine Rich r 97.8 2.2E-05 4.7E-10 55.4 3.3 41 568-609 1-41 (44)
161 PRK05707 DNA polymerase III su 97.8 0.00063 1.4E-08 72.4 15.7 158 176-359 21-203 (328)
162 PRK14086 dnaA chromosomal repl 97.7 0.0011 2.4E-08 75.1 17.3 157 178-356 315-485 (617)
163 KOG2004 Mitochondrial ATP-depe 97.7 0.00052 1.1E-08 76.4 14.3 165 149-326 410-596 (906)
164 PRK10787 DNA-binding ATP-depen 97.7 0.00044 9.6E-09 82.3 14.7 166 149-326 321-506 (784)
165 TIGR02639 ClpA ATP-dependent C 97.7 0.0004 8.7E-09 83.2 14.3 155 150-326 182-358 (731)
166 CHL00095 clpC Clp protease ATP 97.7 0.00041 8.8E-09 84.2 14.4 155 150-325 179-353 (821)
167 PRK08116 hypothetical protein; 97.7 0.00028 6.2E-09 73.0 10.9 104 178-296 115-221 (268)
168 COG0542 clpA ATP-binding subun 97.6 0.0019 4.2E-08 74.6 17.9 126 150-283 491-620 (786)
169 KOG1514 Origin recognition com 97.6 0.0019 4E-08 72.2 16.9 208 149-362 395-624 (767)
170 COG0466 Lon ATP-dependent Lon 97.6 0.0026 5.7E-08 71.4 18.1 166 149-326 322-508 (782)
171 PRK15386 type III secretion pr 97.6 0.00016 3.4E-09 77.4 8.3 74 718-813 48-121 (426)
172 TIGR03689 pup_AAA proteasome A 97.6 0.0014 3E-08 73.4 16.0 166 150-327 182-379 (512)
173 PF13177 DNA_pol3_delta2: DNA 97.6 0.0011 2.3E-08 63.0 12.8 139 154-314 1-162 (162)
174 PRK10536 hypothetical protein; 97.6 0.0014 3E-08 65.7 13.9 138 149-298 54-215 (262)
175 TIGR00602 rad24 checkpoint pro 97.6 0.00049 1.1E-08 79.0 12.2 53 147-200 81-133 (637)
176 COG3267 ExeA Type II secretory 97.6 0.0043 9.2E-08 61.1 16.7 183 175-362 49-248 (269)
177 smart00382 AAA ATPases associa 97.6 0.00038 8.3E-09 65.0 9.5 88 178-269 3-91 (148)
178 KOG4579 Leucine-rich repeat (L 97.6 1.1E-05 2.5E-10 70.2 -1.0 91 536-634 51-141 (177)
179 TIGR03346 chaperone_ClpB ATP-d 97.6 0.00063 1.4E-08 82.8 13.3 155 150-326 173-349 (852)
180 PRK08058 DNA polymerase III su 97.5 0.0022 4.8E-08 68.8 16.0 163 151-325 6-181 (329)
181 PRK10865 protein disaggregatio 97.5 0.0015 3.3E-08 79.2 15.0 45 150-200 178-222 (857)
182 PTZ00361 26 proteosome regulat 97.5 0.00051 1.1E-08 75.6 10.0 158 150-327 183-368 (438)
183 PRK08769 DNA polymerase III su 97.5 0.0041 8.8E-08 65.6 16.3 175 158-360 12-209 (319)
184 PTZ00454 26S protease regulato 97.5 0.0022 4.8E-08 70.2 14.7 159 149-327 144-330 (398)
185 KOG3665 ZYG-1-like serine/thre 97.4 6.2E-05 1.3E-09 87.8 2.1 132 515-654 122-265 (699)
186 PRK11034 clpA ATP-dependent Cl 97.4 0.0014 3.1E-08 77.4 13.3 157 150-326 186-362 (758)
187 PF07693 KAP_NTPase: KAP famil 97.4 0.0084 1.8E-07 65.0 18.3 167 156-325 2-262 (325)
188 TIGR02640 gas_vesic_GvpN gas v 97.4 0.0051 1.1E-07 63.9 15.6 111 178-296 22-161 (262)
189 CHL00176 ftsH cell division pr 97.4 0.0027 5.8E-08 73.7 14.9 178 149-351 182-386 (638)
190 KOG3665 ZYG-1-like serine/thre 97.3 0.00011 2.3E-09 85.9 3.0 135 537-676 121-263 (699)
191 COG1373 Predicted ATPase (AAA+ 97.3 0.0033 7E-08 69.2 14.4 147 179-358 39-191 (398)
192 PRK12377 putative replication 97.3 0.00056 1.2E-08 69.3 7.8 102 177-295 101-205 (248)
193 PRK06090 DNA polymerase III su 97.3 0.012 2.6E-07 62.0 17.6 177 158-360 11-202 (319)
194 PRK10865 protein disaggregatio 97.3 0.0027 5.8E-08 77.1 14.4 138 150-295 568-720 (857)
195 PRK06871 DNA polymerase III su 97.3 0.01 2.2E-07 62.8 16.9 176 159-356 11-200 (325)
196 KOG4579 Leucine-rich repeat (L 97.3 1.5E-05 3.2E-10 69.5 -3.6 84 564-649 49-133 (177)
197 PRK06921 hypothetical protein; 97.3 0.0017 3.6E-08 67.1 10.7 99 177-295 117-224 (266)
198 PRK08181 transposase; Validate 97.3 0.0011 2.5E-08 68.1 9.2 101 178-296 107-209 (269)
199 TIGR03346 chaperone_ClpB ATP-d 97.3 0.0017 3.6E-08 79.2 12.1 126 150-283 565-694 (852)
200 PF04665 Pox_A32: Poxvirus A32 97.2 0.0013 2.8E-08 65.6 9.0 37 177-215 13-49 (241)
201 PRK08939 primosomal protein Dn 97.2 0.0022 4.7E-08 67.6 11.0 122 154-295 135-260 (306)
202 TIGR02639 ClpA ATP-dependent C 97.2 0.0047 1E-07 74.1 15.2 121 150-283 454-580 (731)
203 TIGR03345 VI_ClpV1 type VI sec 97.2 0.0013 2.9E-08 79.3 10.5 137 150-295 566-718 (852)
204 PRK04296 thymidine kinase; Pro 97.2 0.0012 2.5E-08 64.8 7.9 113 178-297 3-117 (190)
205 PRK07952 DNA replication prote 97.2 0.0029 6.3E-08 64.0 10.9 103 177-295 99-204 (244)
206 PRK06526 transposase; Provisio 97.2 0.001 2.3E-08 68.0 7.6 101 177-296 98-201 (254)
207 PRK06964 DNA polymerase III su 97.1 0.021 4.5E-07 61.0 17.3 94 255-360 131-226 (342)
208 TIGR01241 FtsH_fam ATP-depende 97.1 0.0088 1.9E-07 68.5 15.6 187 149-360 54-268 (495)
209 PF01695 IstB_IS21: IstB-like 97.1 0.0012 2.7E-08 63.6 7.2 100 177-295 47-149 (178)
210 PRK09183 transposase/IS protei 97.1 0.0019 4.2E-08 66.6 9.0 101 178-296 103-206 (259)
211 KOG2228 Origin recognition com 97.1 0.0072 1.6E-07 61.6 12.5 172 150-326 24-219 (408)
212 KOG0991 Replication factor C, 97.1 0.0021 4.7E-08 61.5 8.3 46 149-200 26-71 (333)
213 KOG1644 U2-associated snRNP A' 97.1 0.0006 1.3E-08 64.1 4.3 106 723-856 43-151 (233)
214 PF07728 AAA_5: AAA domain (dy 97.1 0.0004 8.6E-09 64.5 3.2 89 180-281 2-90 (139)
215 PRK08118 topology modulation p 97.1 0.00028 6E-09 67.4 2.1 34 179-212 3-37 (167)
216 CHL00095 clpC Clp protease ATP 97.1 0.0029 6.3E-08 76.9 11.3 136 150-295 509-661 (821)
217 KOG0744 AAA+-type ATPase [Post 97.0 0.006 1.3E-07 61.7 11.2 80 177-266 177-260 (423)
218 PF02562 PhoH: PhoH-like prote 97.0 0.00094 2E-08 65.1 5.5 131 154-296 4-156 (205)
219 PRK07993 DNA polymerase III su 97.0 0.023 5E-07 60.8 16.3 181 158-359 10-204 (334)
220 TIGR02902 spore_lonB ATP-depen 97.0 0.0037 8.1E-08 71.6 11.0 170 150-327 65-277 (531)
221 COG1222 RPT1 ATP-dependent 26S 97.0 0.019 4E-07 59.4 14.5 178 150-353 151-357 (406)
222 PRK12608 transcription termina 97.0 0.0066 1.4E-07 64.5 11.8 102 158-266 119-230 (380)
223 PF00158 Sigma54_activat: Sigm 97.0 0.0027 5.8E-08 60.5 7.9 132 152-295 1-143 (168)
224 PRK04132 replication factor C 96.9 0.021 4.6E-07 67.8 16.6 155 185-359 574-731 (846)
225 COG2607 Predicted ATPase (AAA+ 96.9 0.0057 1.2E-07 59.3 9.7 122 148-296 58-183 (287)
226 COG2812 DnaX DNA polymerase II 96.9 0.0016 3.4E-08 72.3 6.8 188 150-354 16-215 (515)
227 PRK07261 topology modulation p 96.9 0.0024 5.3E-08 61.3 7.4 22 179-200 2-23 (171)
228 KOG0741 AAA+-type ATPase [Post 96.9 0.016 3.5E-07 62.6 13.6 131 174-325 535-685 (744)
229 KOG2739 Leucine-rich acidic nu 96.9 0.0003 6.6E-09 69.1 0.9 109 589-701 40-153 (260)
230 PRK06835 DNA replication prote 96.9 0.0027 5.9E-08 67.4 8.1 102 178-295 184-288 (329)
231 TIGR02237 recomb_radB DNA repa 96.9 0.004 8.8E-08 62.5 9.1 49 175-226 10-58 (209)
232 cd00561 CobA_CobO_BtuR ATP:cor 96.9 0.0068 1.5E-07 56.5 9.5 116 178-296 3-138 (159)
233 COG1484 DnaC DNA replication p 96.9 0.0015 3.3E-08 66.9 5.7 81 177-274 105-185 (254)
234 COG0470 HolB ATPase involved i 96.9 0.0076 1.7E-07 65.4 11.5 144 151-314 2-169 (325)
235 smart00763 AAA_PrkA PrkA AAA d 96.9 0.0014 3.1E-08 69.1 5.4 51 151-201 52-102 (361)
236 PRK08699 DNA polymerase III su 96.8 0.024 5.1E-07 60.5 14.6 71 255-325 112-184 (325)
237 PF14532 Sigma54_activ_2: Sigm 96.8 0.001 2.2E-08 61.5 3.8 108 153-296 1-110 (138)
238 PHA00729 NTP-binding motif con 96.8 0.01 2.2E-07 58.7 10.5 25 176-200 16-40 (226)
239 PRK09361 radB DNA repair and r 96.8 0.0052 1.1E-07 62.5 9.0 47 175-224 21-67 (225)
240 COG1223 Predicted ATPase (AAA+ 96.8 0.016 3.5E-07 56.7 11.5 158 149-327 120-298 (368)
241 TIGR01243 CDC48 AAA family ATP 96.8 0.012 2.5E-07 71.1 13.2 180 149-353 177-381 (733)
242 PF10443 RNA12: RNA12 protein; 96.7 0.053 1.1E-06 58.3 16.0 203 155-370 1-289 (431)
243 KOG1969 DNA replication checkp 96.7 0.0051 1.1E-07 69.0 8.7 88 174-281 323-412 (877)
244 PRK11034 clpA ATP-dependent Cl 96.7 0.0072 1.6E-07 71.6 10.6 122 151-283 459-584 (758)
245 KOG1644 U2-associated snRNP A' 96.7 0.0013 2.8E-08 61.9 3.2 83 592-675 42-125 (233)
246 KOG0733 Nuclear AAA ATPase (VC 96.7 0.015 3.2E-07 64.1 11.5 161 150-330 190-378 (802)
247 PRK05541 adenylylsulfate kinas 96.7 0.0089 1.9E-07 58.0 9.1 37 176-214 6-42 (176)
248 COG2884 FtsE Predicted ATPase 96.6 0.014 3E-07 54.7 9.4 125 176-304 27-205 (223)
249 KOG0735 AAA+-type ATPase [Post 96.6 0.023 4.9E-07 63.8 12.6 163 176-360 430-617 (952)
250 PLN00020 ribulose bisphosphate 96.6 0.054 1.2E-06 57.1 14.6 26 175-200 146-171 (413)
251 cd01394 radB RadB. The archaea 96.6 0.0083 1.8E-07 60.6 8.8 44 175-220 17-60 (218)
252 cd00544 CobU Adenosylcobinamid 96.6 0.0096 2.1E-07 56.7 8.5 150 179-354 1-167 (169)
253 cd01120 RecA-like_NTPases RecA 96.6 0.014 3E-07 55.9 10.0 39 179-219 1-39 (165)
254 CHL00195 ycf46 Ycf46; Provisio 96.6 0.021 4.7E-07 64.1 12.3 159 150-328 228-407 (489)
255 PRK11889 flhF flagellar biosyn 96.5 0.034 7.4E-07 59.3 12.8 113 176-291 240-357 (436)
256 PF08423 Rad51: Rad51; InterP 96.5 0.0098 2.1E-07 61.2 8.7 57 176-233 37-97 (256)
257 cd01133 F1-ATPase_beta F1 ATP 96.5 0.0085 1.8E-07 61.2 8.0 89 176-266 68-173 (274)
258 cd01393 recA_like RecA is a b 96.5 0.013 2.8E-07 59.7 9.5 89 175-266 17-124 (226)
259 cd00983 recA RecA is a bacter 96.5 0.0097 2.1E-07 62.6 8.6 85 175-266 53-143 (325)
260 TIGR01243 CDC48 AAA family ATP 96.5 0.041 8.9E-07 66.4 15.1 185 150-359 453-664 (733)
261 PTZ00494 tuzin-like protein; P 96.5 0.16 3.4E-06 54.4 17.1 171 144-326 365-544 (664)
262 cd01123 Rad51_DMC1_radA Rad51_ 96.5 0.013 2.7E-07 60.2 9.3 50 175-224 17-70 (235)
263 PF07724 AAA_2: AAA domain (Cd 96.5 0.003 6.5E-08 60.4 4.1 93 176-283 2-106 (171)
264 PF13207 AAA_17: AAA domain; P 96.4 0.0023 5E-08 57.7 3.1 22 179-200 1-22 (121)
265 PF00448 SRP54: SRP54-type pro 96.4 0.014 3E-07 57.2 8.8 88 177-266 1-93 (196)
266 TIGR01650 PD_CobS cobaltochela 96.4 0.12 2.5E-06 54.4 15.8 59 151-222 46-104 (327)
267 TIGR02974 phageshock_pspF psp 96.4 0.018 3.8E-07 61.8 9.9 130 152-295 1-143 (329)
268 COG0542 clpA ATP-binding subun 96.4 0.011 2.4E-07 68.6 8.7 153 150-326 170-346 (786)
269 TIGR02238 recomb_DMC1 meiotic 96.4 0.011 2.5E-07 62.4 8.2 59 175-234 94-156 (313)
270 TIGR02012 tigrfam_recA protein 96.3 0.014 3.1E-07 61.3 8.6 85 175-266 53-143 (321)
271 COG1875 NYN ribonuclease and A 96.3 0.022 4.7E-07 59.0 9.4 136 152-298 226-390 (436)
272 KOG1947 Leucine rich repeat pr 96.3 0.00041 8.8E-09 80.2 -3.3 80 717-815 290-373 (482)
273 cd03214 ABC_Iron-Siderophores_ 96.3 0.038 8.2E-07 53.8 11.0 121 176-299 24-161 (180)
274 TIGR01817 nifA Nif-specific re 96.3 0.025 5.3E-07 65.7 11.3 134 148-295 194-340 (534)
275 TIGR03499 FlhF flagellar biosy 96.3 0.021 4.5E-07 59.9 9.6 88 176-265 193-281 (282)
276 KOG1051 Chaperone HSP104 and r 96.3 0.039 8.5E-07 65.2 12.6 122 151-283 563-687 (898)
277 KOG2123 Uncharacterized conser 96.3 0.00018 4E-09 70.5 -5.2 63 755-819 39-103 (388)
278 PRK12724 flagellar biosynthesi 96.2 0.029 6.4E-07 60.7 10.6 25 176-200 222-246 (432)
279 PRK09354 recA recombinase A; P 96.2 0.02 4.3E-07 60.8 8.9 85 175-266 58-148 (349)
280 PRK15455 PrkA family serine pr 96.2 0.0039 8.4E-08 69.3 3.7 50 151-200 77-126 (644)
281 PRK11608 pspF phage shock prot 96.2 0.015 3.3E-07 62.4 8.3 134 150-295 6-150 (326)
282 PRK05800 cobU adenosylcobinami 96.2 0.016 3.5E-07 55.3 7.5 80 179-265 3-85 (170)
283 PF13604 AAA_30: AAA domain; P 96.2 0.008 1.7E-07 59.2 5.6 109 177-297 18-132 (196)
284 KOG1947 Leucine rich repeat pr 96.2 0.00052 1.1E-08 79.3 -3.4 241 613-918 186-444 (482)
285 PLN03187 meiotic recombination 96.1 0.021 4.6E-07 60.9 8.9 59 175-234 124-186 (344)
286 PRK06696 uridine kinase; Valid 96.1 0.0071 1.5E-07 61.2 5.1 43 155-200 3-45 (223)
287 PRK07132 DNA polymerase III su 96.1 0.29 6.3E-06 51.4 16.9 134 176-325 17-161 (299)
288 cd03228 ABCC_MRP_Like The MRP 96.1 0.034 7.3E-07 53.6 9.4 119 176-301 27-160 (171)
289 PRK15429 formate hydrogenlyase 96.1 0.025 5.5E-07 67.7 10.3 135 150-296 376-521 (686)
290 KOG2123 Uncharacterized conser 96.1 0.00075 1.6E-08 66.4 -2.2 99 537-645 18-123 (388)
291 cd03247 ABCC_cytochrome_bd The 96.1 0.038 8.2E-07 53.7 9.7 119 176-300 27-161 (178)
292 KOG2035 Replication factor C, 96.1 0.054 1.2E-06 53.9 10.4 181 152-355 15-224 (351)
293 PRK05703 flhF flagellar biosyn 96.1 0.058 1.3E-06 59.9 12.2 88 177-267 221-310 (424)
294 COG4608 AppF ABC-type oligopep 96.1 0.025 5.4E-07 56.8 8.3 125 176-303 38-177 (268)
295 PF13671 AAA_33: AAA domain; P 96.0 0.025 5.5E-07 52.6 8.1 21 179-199 1-21 (143)
296 PRK06067 flagellar accessory p 96.0 0.038 8.3E-07 56.5 10.0 87 175-266 23-130 (234)
297 cd03221 ABCF_EF-3 ABCF_EF-3 E 96.0 0.045 9.8E-07 50.9 9.5 106 176-300 25-131 (144)
298 PHA02244 ATPase-like protein 96.0 0.034 7.3E-07 59.0 9.3 22 179-200 121-142 (383)
299 KOG0733 Nuclear AAA ATPase (VC 96.0 0.082 1.8E-06 58.5 12.3 131 177-327 545-693 (802)
300 PRK12723 flagellar biosynthesi 96.0 0.073 1.6E-06 57.9 12.1 104 176-282 173-282 (388)
301 TIGR02239 recomb_RAD51 DNA rep 95.9 0.033 7.2E-07 59.1 9.3 58 175-233 94-155 (316)
302 cd03223 ABCD_peroxisomal_ALDP 95.9 0.062 1.3E-06 51.4 10.4 117 176-299 26-151 (166)
303 TIGR00708 cobA cob(I)alamin ad 95.9 0.07 1.5E-06 50.4 10.2 119 177-296 5-140 (173)
304 KOG0730 AAA+-type ATPase [Post 95.9 0.042 9.2E-07 61.5 10.1 134 175-328 466-617 (693)
305 cd03238 ABC_UvrA The excision 95.9 0.042 9.2E-07 52.8 9.0 115 176-300 20-153 (176)
306 PRK14974 cell division protein 95.9 0.12 2.6E-06 55.1 13.2 89 176-268 139-234 (336)
307 PRK13695 putative NTPase; Prov 95.9 0.017 3.7E-07 55.8 6.3 22 179-200 2-23 (174)
308 COG1618 Predicted nucleotide k 95.9 0.01 2.2E-07 54.0 4.2 24 177-200 5-28 (179)
309 PF00560 LRR_1: Leucine Rich R 95.9 0.0042 9E-08 36.3 1.2 19 594-612 2-20 (22)
310 PRK04301 radA DNA repair and r 95.8 0.04 8.8E-07 59.0 9.6 58 175-233 100-161 (317)
311 PRK08533 flagellar accessory p 95.8 0.072 1.6E-06 53.9 10.9 49 176-228 23-71 (230)
312 COG0468 RecA RecA/RadA recombi 95.8 0.043 9.3E-07 56.4 9.2 90 174-266 57-151 (279)
313 PRK05022 anaerobic nitric oxid 95.8 0.044 9.5E-07 63.0 10.4 134 149-296 186-332 (509)
314 COG1136 SalX ABC-type antimicr 95.8 0.099 2.2E-06 51.7 11.3 128 176-303 30-210 (226)
315 PRK12727 flagellar biosynthesi 95.8 0.047 1E-06 60.8 9.9 90 176-267 349-439 (559)
316 cd01125 repA Hexameric Replica 95.8 0.08 1.7E-06 54.3 11.2 22 179-200 3-24 (239)
317 PRK14722 flhF flagellar biosyn 95.8 0.041 9E-07 59.2 9.3 91 176-268 136-227 (374)
318 PRK05439 pantothenate kinase; 95.8 0.061 1.3E-06 56.4 10.2 80 174-257 83-166 (311)
319 cd01122 GP4d_helicase GP4d_hel 95.7 0.13 2.8E-06 54.0 12.6 54 176-232 29-82 (271)
320 cd03216 ABC_Carb_Monos_I This 95.7 0.037 8E-07 52.8 7.6 117 176-299 25-145 (163)
321 PLN03186 DNA repair protein RA 95.7 0.052 1.1E-06 58.0 9.4 59 175-234 121-183 (342)
322 KOG2739 Leucine-rich acidic nu 95.7 0.0049 1.1E-07 60.9 1.5 65 751-815 59-127 (260)
323 PRK00771 signal recognition pa 95.6 0.084 1.8E-06 58.4 11.1 89 176-267 94-186 (437)
324 COG0572 Udk Uridine kinase [Nu 95.6 0.027 5.9E-07 54.9 6.4 78 176-257 7-85 (218)
325 cd03222 ABC_RNaseL_inhibitor T 95.6 0.073 1.6E-06 51.2 9.3 104 176-300 24-136 (177)
326 TIGR00554 panK_bact pantothena 95.6 0.066 1.4E-06 55.7 9.5 25 175-199 60-84 (290)
327 cd03115 SRP The signal recogni 95.6 0.1 2.2E-06 50.4 10.4 22 179-200 2-23 (173)
328 PRK08233 hypothetical protein; 95.5 0.037 8E-07 54.1 7.3 24 177-200 3-26 (182)
329 PRK13531 regulatory ATPase Rav 95.5 0.016 3.5E-07 63.8 5.0 152 150-325 20-193 (498)
330 PTZ00035 Rad51 protein; Provis 95.5 0.062 1.4E-06 57.6 9.5 58 175-233 116-177 (337)
331 cd01124 KaiC KaiC is a circadi 95.5 0.052 1.1E-06 53.3 8.3 45 179-227 1-45 (187)
332 cd03281 ABC_MSH5_euk MutS5 hom 95.5 0.038 8.2E-07 55.2 7.3 121 177-302 29-160 (213)
333 KOG0734 AAA+-type ATPase conta 95.5 0.076 1.6E-06 57.7 9.6 51 150-200 304-360 (752)
334 PF12775 AAA_7: P-loop contain 95.5 0.013 2.8E-07 60.8 4.1 96 159-273 22-117 (272)
335 TIGR02236 recomb_radA DNA repa 95.5 0.064 1.4E-06 57.4 9.5 57 176-233 94-154 (310)
336 PRK07667 uridine kinase; Provi 95.5 0.034 7.4E-07 54.7 6.8 38 159-200 3-40 (193)
337 cd03246 ABCC_Protease_Secretio 95.5 0.058 1.3E-06 52.1 8.3 118 176-300 27-160 (173)
338 cd01131 PilT Pilus retraction 95.5 0.039 8.5E-07 54.5 7.2 110 178-298 2-111 (198)
339 PRK05986 cob(I)alamin adenolsy 95.5 0.081 1.8E-06 50.8 8.9 119 176-296 21-158 (191)
340 COG1121 ZnuC ABC-type Mn/Zn tr 95.5 0.092 2E-06 52.8 9.7 125 177-301 30-204 (254)
341 COG0714 MoxR-like ATPases [Gen 95.4 0.062 1.4E-06 58.0 9.2 114 151-282 25-138 (329)
342 cd03230 ABC_DR_subfamily_A Thi 95.4 0.1 2.3E-06 50.3 9.9 119 176-300 25-159 (173)
343 TIGR00390 hslU ATP-dependent p 95.4 0.04 8.6E-07 59.4 7.3 81 150-232 12-104 (441)
344 PRK12726 flagellar biosynthesi 95.4 0.19 4.1E-06 53.7 12.1 91 175-267 204-296 (407)
345 PRK00889 adenylylsulfate kinas 95.4 0.047 1E-06 52.9 7.3 25 176-200 3-27 (175)
346 PF00154 RecA: recA bacterial 95.3 0.033 7.1E-07 58.4 6.4 84 175-265 51-140 (322)
347 TIGR03877 thermo_KaiC_1 KaiC d 95.3 0.1 2.2E-06 53.4 9.9 50 175-228 19-68 (237)
348 COG1102 Cmk Cytidylate kinase 95.3 0.037 8E-07 50.4 5.7 44 179-235 2-45 (179)
349 PF00485 PRK: Phosphoribulokin 95.3 0.061 1.3E-06 53.0 8.1 79 179-260 1-87 (194)
350 KOG0743 AAA+-type ATPase [Post 95.3 0.35 7.6E-06 52.2 13.9 123 178-328 236-385 (457)
351 COG0464 SpoVK ATPases of the A 95.3 0.26 5.7E-06 56.7 14.3 133 175-327 274-424 (494)
352 KOG0738 AAA+-type ATPase [Post 95.3 0.19 4.1E-06 52.7 11.4 34 3-36 11-44 (491)
353 PF13238 AAA_18: AAA domain; P 95.3 0.013 2.7E-07 53.5 2.9 21 180-200 1-21 (129)
354 PF10236 DAP3: Mitochondrial r 95.3 0.12 2.7E-06 54.8 10.6 49 307-356 258-306 (309)
355 COG1066 Sms Predicted ATP-depe 95.3 0.049 1.1E-06 57.6 7.3 83 176-267 92-179 (456)
356 PRK10733 hflB ATP-dependent me 95.3 0.14 3.1E-06 60.4 12.1 157 151-327 153-336 (644)
357 PF07726 AAA_3: ATPase family 95.3 0.011 2.4E-07 52.1 2.2 28 180-209 2-29 (131)
358 PF03308 ArgK: ArgK protein; 95.3 0.04 8.6E-07 55.0 6.3 63 158-224 14-76 (266)
359 TIGR00959 ffh signal recogniti 95.3 0.1 2.2E-06 57.7 10.1 25 176-200 98-122 (428)
360 PF01583 APS_kinase: Adenylyls 95.2 0.032 6.9E-07 51.8 5.3 36 177-214 2-37 (156)
361 PRK09270 nucleoside triphospha 95.2 0.099 2.2E-06 53.1 9.5 27 174-200 30-56 (229)
362 KOG0731 AAA+-type ATPase conta 95.2 0.31 6.8E-06 56.6 14.2 182 150-355 311-520 (774)
363 PRK10867 signal recognition pa 95.2 0.081 1.8E-06 58.4 9.2 25 176-200 99-123 (433)
364 PRK10820 DNA-binding transcrip 95.2 0.052 1.1E-06 62.4 8.1 133 150-296 204-349 (520)
365 PF08298 AAA_PrkA: PrkA AAA do 95.2 0.025 5.4E-07 59.3 4.8 50 150-199 61-110 (358)
366 PTZ00301 uridine kinase; Provi 95.2 0.03 6.6E-07 55.4 5.2 23 177-199 3-25 (210)
367 cd02025 PanK Pantothenate kina 95.1 0.096 2.1E-06 52.6 8.8 22 179-200 1-22 (220)
368 COG2842 Uncharacterized ATPase 95.1 0.54 1.2E-05 48.0 13.8 122 148-282 70-191 (297)
369 TIGR03878 thermo_KaiC_2 KaiC d 95.1 0.088 1.9E-06 54.5 8.7 41 175-217 34-74 (259)
370 cd02027 APSK Adenosine 5'-phos 95.1 0.062 1.3E-06 50.3 6.8 22 179-200 1-22 (149)
371 PF03969 AFG1_ATPase: AFG1-lik 95.1 0.033 7.1E-07 60.1 5.5 102 176-296 61-167 (362)
372 cd02019 NK Nucleoside/nucleoti 95.0 0.018 3.9E-07 45.6 2.6 22 179-200 1-22 (69)
373 PF00910 RNA_helicase: RNA hel 95.0 0.025 5.3E-07 49.5 3.6 21 180-200 1-21 (107)
374 TIGR00064 ftsY signal recognit 95.0 0.15 3.3E-06 52.9 10.0 89 176-267 71-165 (272)
375 PRK05917 DNA polymerase III su 95.0 0.77 1.7E-05 47.6 14.9 131 159-313 6-154 (290)
376 COG0396 sufC Cysteine desulfur 94.9 0.3 6.5E-06 47.7 11.0 64 243-306 149-214 (251)
377 PRK06547 hypothetical protein; 94.9 0.038 8.2E-07 52.9 4.9 26 175-200 13-38 (172)
378 cd03282 ABC_MSH4_euk MutS4 hom 94.9 0.089 1.9E-06 52.1 7.7 120 177-303 29-158 (204)
379 cd03229 ABC_Class3 This class 94.9 0.079 1.7E-06 51.4 7.2 122 176-300 25-165 (178)
380 COG1703 ArgK Putative periplas 94.8 0.05 1.1E-06 55.1 5.7 63 160-226 38-100 (323)
381 COG1126 GlnQ ABC-type polar am 94.8 0.44 9.5E-06 46.1 11.6 124 176-302 27-202 (240)
382 KOG1532 GTPase XAB1, interacts 94.8 0.14 3E-06 50.9 8.5 90 174-264 16-123 (366)
383 TIGR00235 udk uridine kinase. 94.8 0.027 5.9E-07 56.2 3.8 26 175-200 4-29 (207)
384 TIGR00382 clpX endopeptidase C 94.8 0.15 3.2E-06 55.9 9.7 51 149-199 76-138 (413)
385 PRK05973 replicative DNA helic 94.8 0.15 3.3E-06 51.3 9.0 50 176-229 63-112 (237)
386 cd00267 ABC_ATPase ABC (ATP-bi 94.7 0.084 1.8E-06 50.0 6.9 119 177-301 25-145 (157)
387 TIGR02329 propionate_PrpR prop 94.7 0.075 1.6E-06 60.6 7.6 132 150-295 212-357 (526)
388 COG4088 Predicted nucleotide k 94.7 0.38 8.2E-06 45.9 10.7 23 178-200 2-24 (261)
389 cd01121 Sms Sms (bacterial rad 94.7 0.097 2.1E-06 56.9 8.0 83 176-266 81-168 (372)
390 PRK05480 uridine/cytidine kina 94.7 0.028 6.1E-07 56.3 3.7 25 176-200 5-29 (209)
391 PF13479 AAA_24: AAA domain 94.7 0.11 2.5E-06 51.9 8.0 32 177-218 3-34 (213)
392 PF00006 ATP-synt_ab: ATP synt 94.7 0.092 2E-06 52.1 7.1 84 178-265 16-114 (215)
393 PF13481 AAA_25: AAA domain; P 94.7 0.17 3.7E-06 49.9 9.2 41 178-218 33-81 (193)
394 PTZ00088 adenylate kinase 1; P 94.7 0.035 7.5E-07 55.9 4.2 22 179-200 8-29 (229)
395 PRK06002 fliI flagellum-specif 94.7 0.15 3.1E-06 56.2 9.2 88 176-266 164-264 (450)
396 PRK09280 F0F1 ATP synthase sub 94.6 0.17 3.8E-06 55.8 9.8 90 176-266 143-248 (463)
397 cd03369 ABCC_NFT1 Domain 2 of 94.6 0.41 9E-06 47.8 12.0 24 176-199 33-56 (207)
398 PF08433 KTI12: Chromatin asso 94.6 0.11 2.3E-06 53.8 7.8 23 178-200 2-24 (270)
399 COG4618 ArpD ABC-type protease 94.6 0.4 8.6E-06 52.4 12.0 23 177-199 362-384 (580)
400 COG0467 RAD55 RecA-superfamily 94.6 0.08 1.7E-06 55.1 7.0 52 175-230 21-72 (260)
401 PRK14721 flhF flagellar biosyn 94.6 0.22 4.8E-06 54.7 10.5 88 176-265 190-278 (420)
402 PF13245 AAA_19: Part of AAA d 94.6 0.067 1.5E-06 43.1 4.9 23 177-199 10-32 (76)
403 COG4133 CcmA ABC-type transpor 94.6 0.4 8.7E-06 45.3 10.5 54 243-296 135-190 (209)
404 COG1428 Deoxynucleoside kinase 94.6 0.025 5.4E-07 54.3 2.8 24 177-200 4-27 (216)
405 TIGR00150 HI0065_YjeE ATPase, 94.6 0.051 1.1E-06 49.0 4.6 41 157-201 6-46 (133)
406 cd03217 ABC_FeS_Assembly ABC-t 94.6 0.16 3.4E-06 50.4 8.7 120 176-300 25-168 (200)
407 PRK13539 cytochrome c biogenes 94.6 0.19 4.1E-06 50.2 9.3 63 249-314 138-202 (207)
408 COG1120 FepC ABC-type cobalami 94.5 0.33 7.1E-06 49.2 10.7 127 176-302 27-205 (258)
409 PRK06762 hypothetical protein; 94.5 0.031 6.6E-07 53.7 3.4 24 177-200 2-25 (166)
410 TIGR03881 KaiC_arch_4 KaiC dom 94.5 0.18 4E-06 51.3 9.3 40 176-217 19-58 (229)
411 PRK05201 hslU ATP-dependent pr 94.5 0.087 1.9E-06 56.9 6.9 81 150-232 15-107 (443)
412 PRK08006 replicative DNA helic 94.5 3.7 8.1E-05 46.4 20.2 55 176-233 223-277 (471)
413 PRK12597 F0F1 ATP synthase sub 94.5 0.18 4E-06 55.8 9.5 90 176-266 142-247 (461)
414 PRK06217 hypothetical protein; 94.5 0.12 2.6E-06 50.4 7.4 22 179-200 3-24 (183)
415 cd02028 UMPK_like Uridine mono 94.4 0.092 2E-06 50.9 6.4 22 179-200 1-22 (179)
416 PRK11388 DNA-binding transcrip 94.4 0.12 2.5E-06 61.6 8.7 131 150-295 325-466 (638)
417 PRK04328 hypothetical protein; 94.4 0.15 3.2E-06 52.5 8.2 40 176-217 22-61 (249)
418 cd03244 ABCC_MRP_domain2 Domai 94.4 0.33 7.1E-06 49.1 10.8 25 176-200 29-53 (221)
419 cd01135 V_A-ATPase_B V/A-type 94.4 0.14 3E-06 52.3 7.8 92 176-267 68-177 (276)
420 COG4181 Predicted ABC-type tra 94.4 0.96 2.1E-05 41.9 12.1 87 218-304 120-215 (228)
421 PRK09519 recA DNA recombinatio 94.3 0.13 2.9E-06 60.5 8.4 85 175-266 58-148 (790)
422 PRK03839 putative kinase; Prov 94.3 0.033 7.2E-07 54.2 3.2 22 179-200 2-23 (180)
423 cd03283 ABC_MutS-like MutS-lik 94.3 0.37 7.9E-06 47.6 10.4 23 178-200 26-48 (199)
424 PRK07276 DNA polymerase III su 94.3 2 4.4E-05 44.7 16.2 69 255-324 103-173 (290)
425 PRK14723 flhF flagellar biosyn 94.3 0.24 5.2E-06 58.2 10.3 87 177-266 185-273 (767)
426 PRK06995 flhF flagellar biosyn 94.3 0.23 5.1E-06 55.4 9.8 88 177-266 256-344 (484)
427 PRK08972 fliI flagellum-specif 94.2 0.13 2.9E-06 56.1 7.7 87 176-266 161-262 (444)
428 cd03213 ABCG_EPDR ABCG transpo 94.2 0.31 6.7E-06 48.0 9.8 119 176-297 34-172 (194)
429 PRK06731 flhF flagellar biosyn 94.2 0.4 8.7E-06 49.4 10.8 102 177-281 75-181 (270)
430 KOG3347 Predicted nucleotide k 94.2 0.067 1.4E-06 47.9 4.3 69 177-255 7-75 (176)
431 PRK04040 adenylate kinase; Pro 94.2 0.039 8.4E-07 53.8 3.3 24 177-200 2-25 (188)
432 TIGR03574 selen_PSTK L-seryl-t 94.2 0.25 5.5E-06 50.9 9.5 22 179-200 1-22 (249)
433 COG0003 ArsA Predicted ATPase 94.2 0.091 2E-06 55.4 6.2 49 177-227 2-50 (322)
434 PRK15424 propionate catabolism 94.2 0.13 2.7E-06 58.7 7.7 47 150-200 219-265 (538)
435 PRK03846 adenylylsulfate kinas 94.2 0.13 2.8E-06 50.9 7.0 26 175-200 22-47 (198)
436 cd03215 ABC_Carb_Monos_II This 94.1 0.35 7.5E-06 47.1 9.9 25 176-200 25-49 (182)
437 PRK10875 recD exonuclease V su 94.1 0.24 5.3E-06 57.5 10.0 118 177-297 167-303 (615)
438 PF01078 Mg_chelatase: Magnesi 94.1 0.076 1.6E-06 51.6 5.0 42 150-199 3-44 (206)
439 COG0563 Adk Adenylate kinase a 94.1 0.095 2.1E-06 50.4 5.7 22 179-200 2-23 (178)
440 cd03233 ABC_PDR_domain1 The pl 94.1 0.45 9.7E-06 47.2 10.8 25 176-200 32-56 (202)
441 smart00534 MUTSac ATPase domai 94.1 0.076 1.7E-06 51.9 5.1 118 179-302 1-128 (185)
442 PRK00625 shikimate kinase; Pro 94.1 0.04 8.6E-07 52.8 3.0 22 179-200 2-23 (173)
443 PRK12678 transcription termina 94.0 0.066 1.4E-06 59.6 4.9 99 161-266 405-513 (672)
444 CHL00206 ycf2 Ycf2; Provisiona 94.0 0.52 1.1E-05 60.0 12.9 25 176-200 1629-1653(2281)
445 TIGR03498 FliI_clade3 flagella 94.0 0.17 3.6E-06 55.6 8.0 89 176-267 139-241 (418)
446 cd01136 ATPase_flagellum-secre 94.0 0.28 6.1E-06 51.9 9.3 87 176-266 68-169 (326)
447 TIGR01360 aden_kin_iso1 adenyl 94.0 0.046 9.9E-07 53.7 3.3 24 176-199 2-25 (188)
448 cd03245 ABCC_bacteriocin_expor 93.9 0.49 1.1E-05 47.8 10.9 25 176-200 29-53 (220)
449 PTZ00185 ATPase alpha subunit; 93.9 0.21 4.5E-06 55.2 8.4 91 176-266 188-299 (574)
450 PRK10463 hydrogenase nickel in 93.9 0.28 6E-06 50.7 8.8 27 174-200 101-127 (290)
451 KOG0728 26S proteasome regulat 93.9 1.8 3.8E-05 42.6 13.5 155 152-326 148-331 (404)
452 TIGR01425 SRP54_euk signal rec 93.8 0.29 6.3E-06 53.8 9.4 25 176-200 99-123 (429)
453 PRK05922 type III secretion sy 93.8 0.33 7.1E-06 53.4 9.8 87 176-266 156-257 (434)
454 cd01132 F1_ATPase_alpha F1 ATP 93.8 0.12 2.5E-06 52.9 5.9 88 176-267 68-172 (274)
455 COG5635 Predicted NTPase (NACH 93.8 0.13 2.9E-06 62.7 7.5 140 176-319 221-371 (824)
456 PRK09544 znuC high-affinity zi 93.8 0.41 9E-06 49.3 10.2 25 176-200 29-53 (251)
457 COG2401 ABC-type ATPase fused 93.8 0.13 2.7E-06 54.4 6.1 157 151-307 372-579 (593)
458 PRK08927 fliI flagellum-specif 93.8 0.33 7.1E-06 53.5 9.6 88 176-267 157-259 (442)
459 PF13306 LRR_5: Leucine rich r 93.8 0.12 2.6E-06 47.0 5.5 60 563-624 30-90 (129)
460 TIGR01818 ntrC nitrogen regula 93.7 0.35 7.7E-06 55.3 10.6 135 150-296 134-279 (463)
461 PRK13765 ATP-dependent proteas 93.7 0.1 2.2E-06 60.6 6.0 75 149-233 30-104 (637)
462 cd03232 ABC_PDR_domain2 The pl 93.7 0.3 6.5E-06 48.1 8.6 24 176-199 32-55 (192)
463 COG1936 Predicted nucleotide k 93.7 0.051 1.1E-06 50.4 2.8 20 179-198 2-21 (180)
464 PF09848 DUF2075: Uncharacteri 93.7 0.22 4.7E-06 54.4 8.3 41 178-218 2-42 (352)
465 TIGR00764 lon_rel lon-related 93.7 0.14 3E-06 59.7 7.1 73 150-233 18-91 (608)
466 PRK13543 cytochrome c biogenes 93.7 0.62 1.3E-05 46.8 11.0 25 176-200 36-60 (214)
467 COG4240 Predicted kinase [Gene 93.7 0.31 6.7E-06 47.1 7.9 83 174-257 47-134 (300)
468 TIGR03575 selen_PSTK_euk L-ser 93.6 0.26 5.6E-06 52.5 8.4 22 180-201 2-23 (340)
469 cd02024 NRK1 Nicotinamide ribo 93.6 0.046 1E-06 52.9 2.6 22 179-200 1-22 (187)
470 TIGR01359 UMP_CMP_kin_fam UMP- 93.6 0.046 9.9E-07 53.5 2.6 21 179-199 1-21 (183)
471 PRK15453 phosphoribulokinase; 93.6 0.43 9.4E-06 48.8 9.5 77 176-254 4-88 (290)
472 cd00227 CPT Chloramphenicol (C 93.6 0.054 1.2E-06 52.4 3.1 23 178-200 3-25 (175)
473 TIGR02858 spore_III_AA stage I 93.6 0.32 7E-06 50.2 8.8 128 158-300 97-233 (270)
474 COG3640 CooC CO dehydrogenase 93.6 0.13 2.9E-06 50.2 5.5 41 179-220 2-42 (255)
475 PF03205 MobB: Molybdopterin g 93.6 0.12 2.6E-06 47.5 5.1 39 178-217 1-39 (140)
476 cd03251 ABCC_MsbA MsbA is an e 93.6 0.88 1.9E-05 46.4 12.1 55 247-301 147-202 (234)
477 PRK00131 aroK shikimate kinase 93.5 0.056 1.2E-06 52.4 3.1 24 177-200 4-27 (175)
478 PF13504 LRR_7: Leucine rich r 93.5 0.049 1.1E-06 29.3 1.5 16 593-608 2-17 (17)
479 cd03250 ABCC_MRP_domain1 Domai 93.5 0.89 1.9E-05 45.2 11.8 25 176-200 30-54 (204)
480 PF00625 Guanylate_kin: Guanyl 93.5 0.072 1.6E-06 52.0 3.8 36 177-214 2-37 (183)
481 cd03253 ABCC_ATM1_transporter 93.5 0.59 1.3E-05 47.8 10.8 55 247-301 146-201 (236)
482 PF13086 AAA_11: AAA domain; P 93.5 0.14 3.1E-06 52.2 6.3 52 179-230 19-75 (236)
483 PRK08840 replicative DNA helic 93.5 5.1 0.00011 45.2 18.8 55 176-233 216-270 (464)
484 cd00984 DnaB_C DnaB helicase C 93.5 0.53 1.1E-05 48.4 10.5 54 176-232 12-65 (242)
485 KOG0652 26S proteasome regulat 93.5 1.1 2.4E-05 44.2 11.5 50 150-199 171-227 (424)
486 TIGR02322 phosphon_PhnN phosph 93.5 0.059 1.3E-06 52.4 3.2 23 178-200 2-24 (179)
487 cd02023 UMPK Uridine monophosp 93.5 0.05 1.1E-06 54.0 2.6 22 179-200 1-22 (198)
488 PRK08149 ATP synthase SpaL; Va 93.5 0.2 4.3E-06 55.0 7.3 88 176-267 150-252 (428)
489 KOG0729 26S proteasome regulat 93.4 0.099 2.1E-06 51.4 4.4 50 150-199 177-233 (435)
490 COG3598 RepA RecA-family ATPas 93.4 0.34 7.5E-06 49.5 8.2 59 178-236 90-157 (402)
491 PRK09580 sufC cysteine desulfu 93.4 0.65 1.4E-05 47.9 11.0 25 176-200 26-50 (248)
492 cd02021 GntK Gluconate kinase 93.4 0.054 1.2E-06 50.9 2.6 22 179-200 1-22 (150)
493 COG1224 TIP49 DNA helicase TIP 93.4 0.26 5.5E-06 51.2 7.4 49 148-200 37-88 (450)
494 PF06745 KaiC: KaiC; InterPro 93.4 0.13 2.7E-06 52.3 5.5 50 176-228 18-67 (226)
495 TIGR02655 circ_KaiC circadian 93.4 0.39 8.4E-06 54.8 9.9 50 175-228 261-310 (484)
496 TIGR02868 CydC thiol reductant 93.4 0.55 1.2E-05 54.7 11.5 25 176-200 360-384 (529)
497 cd03280 ABC_MutS2 MutS2 homolo 93.4 0.25 5.5E-06 48.9 7.5 23 177-199 28-50 (200)
498 COG2019 AdkA Archaeal adenylat 93.4 0.076 1.6E-06 48.7 3.2 46 177-234 4-49 (189)
499 PF06309 Torsin: Torsin; Inte 93.3 0.16 3.4E-06 44.9 5.1 47 151-200 26-76 (127)
500 cd03240 ABC_Rad50 The catalyti 93.3 0.47 1E-05 47.1 9.4 53 249-301 132-188 (204)
No 1
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=100.00 E-value=1.2e-82 Score=741.37 Aligned_cols=619 Identities=28% Similarity=0.439 Sum_probs=498.6
Q ss_pred hhHHHHHHhhChHHHHHHHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHHHhHhchhhHHHHHHHHHHHHHhhcCCCCC
Q 002308 3 KTLHEVKLVVGVEKEVKSLTSHLQAIQAVSDDAEEKQVKDRAIRLWLGRLKYASYDIEDVLDEWITARHKLQIKGGADKK 82 (938)
Q Consensus 3 ~~~~e~~~~~~~~~~~~~l~~~l~~~~~~l~~a~~~~~~~~~~~~wl~~l~~~~~d~ed~ld~~~~~~~~~~~~~~~~~~ 82 (938)
.+.+++..+.++++.+..|++.|..+|+++++|+.+......+..|.+.+++++|++||.++.|.......+...... .
T Consensus 15 ~l~~~~~~~~~~~~~i~~Lk~~L~~l~~~l~d~~a~~~~~~~~~~~~e~~~~~~~~~e~~~~~~~v~~~~~~~~~~l~-~ 93 (889)
T KOG4658|consen 15 LLNRESECLDGKDNYILELKENLKALQSALEDLDAKRDDLERRVNWEEDVGDLVYLAEDIIWLFLVEEIERKANDLLS-T 93 (889)
T ss_pred HHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhh-h
Confidence 356788889999999999999999999999999999887889999999999999999999999998876654322110 0
Q ss_pred cc-ccccCCccccCccchhhHHHHHHHHHHHHHHHHHHHhccccccccc----CCCCCCCCCcccccCCCCCCceecchh
Q 002308 83 TK-VCFCFPASCFGFKQVFQRHDIANKIKEVSEELHDIATQKDMFKFES----SSKSSERPRRVQSTSLIDEEEICGRVG 157 (938)
Q Consensus 83 ~~-~~~~~~~~~~~~~~~~~r~~~~~~i~~~~~~l~~i~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~vGr~~ 157 (938)
+. ..+..... ..++..+..+..+.+++..+.+....+.... ...........+..+...... ||.+.
T Consensus 94 ~~~~~~~~c~~-------~~~~~~~~~~~~~~~rv~~~l~~ve~l~~~~~~~~~~~~~~~~~~~e~~~~~~~~~-VG~e~ 165 (889)
T KOG4658|consen 94 RSVERQRLCLC-------GFCSKNVSDSYKYGKRVSKVLREVESLGSKGVFEVVGESLDPREKVETRPIQSESD-VGLET 165 (889)
T ss_pred hHHHHHHHhhh-------hhHhHhhhhhHhHHHHHHHHHHHHHHhccccceecccccccchhhcccCCCCcccc-ccHHH
Confidence 10 11111100 2333344444444444444444333333221 110001111223333333334 99999
Q ss_pred hHHHHHHHHhccCcccCCCeEEEEEEccCCChHHHHHHHHhhhhh-hhcccCeEEEEEeCCCCCHHHHHHHHHHHhcCCC
Q 002308 158 ERNALLSMLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNHVE-VKREFDKTLWVCVSETFDEFRIAKAMLEALTGST 236 (938)
Q Consensus 158 ~~~~l~~~l~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~v~~~~~-~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~ 236 (938)
.++++.+.|..++ .++++|+||||+||||||+.++++.. ++.+|+.++||+||+.++...++.+|++.++...
T Consensus 166 ~~~kl~~~L~~d~------~~iv~i~GMGGvGKTTL~~qi~N~~~~v~~~Fd~~iWV~VSk~f~~~~iq~~Il~~l~~~~ 239 (889)
T KOG4658|consen 166 MLEKLWNRLMEDD------VGIVGIYGMGGVGKTTLARQIFNKFDEVGNHFDGVIWVVVSKEFTTRKIQQTILERLGLLD 239 (889)
T ss_pred HHHHHHHHhccCC------CCEEEEECCCcccHHHHHHHHhcccchhcccCceEEEEEEcccccHHhHHHHHHHHhccCC
Confidence 9999999998643 38999999999999999999999977 8999999999999999999999999999998643
Q ss_pred CCC--CcHHHHHHHHHHHhcCceEEEEEecCCCCCccChhHHHHhhhCCCCCcEEEEEcCChhhhhh-hcCCceEeCCCC
Q 002308 237 SNL--NALQSLLISIDESIAGKRFLLVLDDVWDGDYIKWEPFYRCLKKGLHGSKILITTRKESIVSM-MRSTDIISIEEL 313 (938)
Q Consensus 237 ~~~--~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtr~~~v~~~-~~~~~~~~l~~L 313 (938)
... ...++.+..+.+.|++|||+||+||||+. .+|+.+..++|....||+|++|||+++|+.. +++...+++..|
T Consensus 240 ~~~~~~~~~~~~~~i~~~L~~krfllvLDDIW~~--~dw~~I~~~~p~~~~g~KvvlTTRs~~V~~~~m~~~~~~~v~~L 317 (889)
T KOG4658|consen 240 EEWEDKEEDELASKLLNLLEGKRFLLVLDDIWEE--VDWDKIGVPFPSRENGSKVVLTTRSEEVCGRAMGVDYPIEVECL 317 (889)
T ss_pred cccchhhHHHHHHHHHHHhccCceEEEEeccccc--ccHHhcCCCCCCccCCeEEEEEeccHhhhhccccCCcccccccc
Confidence 332 23368889999999999999999999987 4699999999999999999999999999999 788889999999
Q ss_pred ChHHHHHHHHHhhcCCCCCchhhHHHHHHHHHHHhcCCChhHHHHHHhhhcCCCCHHHHHHHHhccccc----ccccccc
Q 002308 314 AEEECWVLFKRLAFFGRSTEECEKLEQIGQRIARKCKGLPLAAKTMGSLMSSKKTEEEWKRILNSDLWK----VEEIEKG 389 (938)
Q Consensus 314 ~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~~~~~l~~~~~~~~w~~~~~~~~~~----~~~~~~~ 389 (938)
+++|||+||++.++.... ...+.++++|++++++|+|+|||+.++|+.|+.+.+..+|+++.+...+. .+...+.
T Consensus 318 ~~~eaW~LF~~~v~~~~~-~~~~~i~~lak~v~~kC~GLPLAl~viG~~ma~K~t~~eW~~~~~~l~s~~~~~~~~~~~~ 396 (889)
T KOG4658|consen 318 TPEEAWDLFQKKVGPNTL-GSHPDIEELAKEVAEKCGGLPLALNVLGGLLACKKTVQEWRRALNVLKSSLAADFSGMEES 396 (889)
T ss_pred CccccHHHHHHhhccccc-cccccHHHHHHHHHHHhCChHHHHHHHHHHhcCCCcHHHHHHHHccccccccCCCCchhhh
Confidence 999999999999986543 23344899999999999999999999999999999999999998865444 2233567
Q ss_pred chhhHHhhhccCChhHHHHHhHhccCCCCcccChHHHHHHHHHcCCCcchhccccchHHHHHHHHHHHHHhccccccccc
Q 002308 390 VLTPLWLSYNDLPSRVKRCFSYCAVFPKDYNIKKDELITLWMAQGYLSAEAAEQDEEMETIGEEYFGILASRSFFQEFKK 469 (938)
Q Consensus 390 ~~~~l~~sy~~L~~~~k~~f~~~~~fp~~~~i~~~~li~~w~a~g~i~~~~~~~~~~~~~~~~~~~~~L~~~~ll~~~~~ 469 (938)
+++++++||+.||++.|.||+|||+||+||.|+++.|+.+|+||||+.+ .......++.|..|+++|++++++.....
T Consensus 397 i~~iLklSyd~L~~~lK~CFLycalFPED~~I~~e~Li~yWiaEGfi~~--~~~~~~~~d~G~~~i~~LV~~~Ll~~~~~ 474 (889)
T KOG4658|consen 397 ILPILKLSYDNLPEELKSCFLYCALFPEDYEIKKEKLIEYWIAEGFIDP--LDGGETAEDVGYDYIEELVRASLLIEERD 474 (889)
T ss_pred hHHhhhccHhhhhHHHHHHHHhhccCCcccccchHHHHHHHHhccCcCc--cccccchhcchHHHHHHHHHHHHHhhccc
Confidence 9999999999999999999999999999999999999999999999987 23467889999999999999999987654
Q ss_pred CCCCceeEEEechhHHHHHHHhhc-----ccceEEeeC-CcccccCCCCcccccceEEEEccCCCcCcccccccCceeEE
Q 002308 470 SYDNRIIACKMHDMVHDLAQFVSE-----NECFSLEVN-GSEELNVPNSLDEKVRHLMLIMGKESTFPISTCRAKRIRSL 543 (938)
Q Consensus 470 ~~~~~~~~~~mhdlv~~~~~~~~~-----~e~~~~~~~-~~~~~~~~~~~~~~~r~l~l~~~~~~~~~~~~~~~~~Lr~L 543 (938)
. ++..+|+|||++|++|.+++. .+..+.... +....+ ....+..+|++++.++.+...+... .+++|++|
T Consensus 475 ~--~~~~~~kmHDvvRe~al~ias~~~~~~e~~iv~~~~~~~~~~-~~~~~~~~rr~s~~~~~~~~~~~~~-~~~~L~tL 550 (889)
T KOG4658|consen 475 E--GRKETVKMHDVVREMALWIASDFGKQEENQIVSDGVGLSEIP-QVKSWNSVRRMSLMNNKIEHIAGSS-ENPKLRTL 550 (889)
T ss_pred c--cceeEEEeeHHHHHHHHHHhccccccccceEEECCcCccccc-cccchhheeEEEEeccchhhccCCC-CCCccceE
Confidence 3 566789999999999999999 555444432 222211 2234578999999999887554443 45689999
Q ss_pred eccCCCCCCCCchhhHHHHHhccCCCeeEEecCCCCCCcccCccccccCCCCeeeecCCccccccccccCCCCccEEEcC
Q 002308 544 LIEWPEFGHSSLNGEILEELFRESTSLRALDFPSFYLPLEIPRNIEKLVHLRYLNLSDQKIKKLPETLCELYNLEKLDIS 623 (938)
Q Consensus 544 ~l~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~n~~~~~lp~~~~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~l~ 623 (938)
.+.+|.. -...+...+|..++.|+||||++|.-.+.+|..|++|.+||||+|+++.+..+|..+.+|++|.+|++.
T Consensus 551 ll~~n~~----~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~~LP~~l~~Lk~L~~Lnl~ 626 (889)
T KOG4658|consen 551 LLQRNSD----WLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGISHLPSGLGNLKKLIYLNLE 626 (889)
T ss_pred EEeecch----hhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCccccchHHHHHHhhheeccc
Confidence 9998852 114456777999999999999999878899999999999999999999999999999999999999999
Q ss_pred CCCCcccccccccccCccceeecCCC
Q 002308 624 GCSDLRELPKGIGKLINMKHLLNSGT 649 (938)
Q Consensus 624 ~~~~l~~lp~~i~~l~~L~~L~l~~~ 649 (938)
.+..+..+|..+..|++|++|.+...
T Consensus 627 ~~~~l~~~~~i~~~L~~Lr~L~l~~s 652 (889)
T KOG4658|consen 627 VTGRLESIPGILLELQSLRVLRLPRS 652 (889)
T ss_pred cccccccccchhhhcccccEEEeecc
Confidence 99988888887778999999998765
No 2
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=100.00 E-value=4.7e-64 Score=621.65 Aligned_cols=721 Identities=20% Similarity=0.280 Sum_probs=493.0
Q ss_pred HHHHHHHHHHHHHHHhcccccccccCCC--------CCCCCCcccccCCCCCCceecchhhHHHHHHHHhccCcccCCCe
Q 002308 106 ANKIKEVSEELHDIATQKDMFKFESSSK--------SSERPRRVQSTSLIDEEEICGRVGERNALLSMLLCESSEQQKGL 177 (938)
Q Consensus 106 ~~~i~~~~~~l~~i~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~vGr~~~~~~l~~~l~~~~~~~~~~~ 177 (938)
..++++|++++.+++.... +.+..... ...........+..+.+.+|||+++++++.+++... .++.
T Consensus 133 ~~~~~~w~~al~~~~~~~g-~~~~~~~~E~~~i~~Iv~~v~~~l~~~~~~~~~~~vG~~~~l~~l~~lL~l~----~~~~ 207 (1153)
T PLN03210 133 EDEKIQWKQALTDVANILG-YHSQNWPNEAKMIEEIANDVLGKLNLTPSNDFEDFVGIEDHIAKMSSLLHLE----SEEV 207 (1153)
T ss_pred hhHHHHHHHHHHHHhCcCc-eecCCCCCHHHHHHHHHHHHHHhhccccCcccccccchHHHHHHHHHHHccc----cCce
Confidence 4578889999998876432 22211110 011111222334445678999999999999988644 3468
Q ss_pred EEEEEEccCCChHHHHHHHHhhhhhhhcccCeEEEEEe---CCCC-----------C-HHHHHHHHHHHhcCCCC-CCCc
Q 002308 178 HIISIVGMGGIGKTTLAQLACNHVEVKREFDKTLWVCV---SETF-----------D-EFRIAKAMLEALTGSTS-NLNA 241 (938)
Q Consensus 178 ~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~---~~~~-----------~-~~~~~~~i~~~l~~~~~-~~~~ 241 (938)
++|+|+||||+||||||+++|+ ++..+|+..+|+.. +... . ...++++++.++..... ....
T Consensus 208 ~vvgI~G~gGiGKTTLA~~l~~--~l~~~F~g~vfv~~~~v~~~~~~~~~~~~~~~~~~~~l~~~~l~~il~~~~~~~~~ 285 (1153)
T PLN03210 208 RMVGIWGSSGIGKTTIARALFS--RLSRQFQSSVFIDRAFISKSMEIYSSANPDDYNMKLHLQRAFLSEILDKKDIKIYH 285 (1153)
T ss_pred EEEEEEcCCCCchHHHHHHHHH--HHhhcCCeEEEeeccccccchhhcccccccccchhHHHHHHHHHHHhCCCCcccCC
Confidence 9999999999999999999999 67788988888742 1110 1 12344555555433221 1111
Q ss_pred HHHHHHHHHHHhcCceEEEEEecCCCCCccChhHHHHhhhCCCCCcEEEEEcCChhhhhhhcCCceEeCCCCChHHHHHH
Q 002308 242 LQSLLISIDESIAGKRFLLVLDDVWDGDYIKWEPFYRCLKKGLHGSKILITTRKESIVSMMRSTDIISIEELAEEECWVL 321 (938)
Q Consensus 242 ~~~~~~~l~~~l~~~~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtr~~~v~~~~~~~~~~~l~~L~~~~~~~l 321 (938)
...+++.++++|+||||||||+. ..|+.+.....+.++||+||||||++.++..++....|++..+++++||+|
T Consensus 286 ----~~~~~~~L~~krvLLVLDdv~~~--~~l~~L~~~~~~~~~GsrIIiTTrd~~vl~~~~~~~~~~v~~l~~~ea~~L 359 (1153)
T PLN03210 286 ----LGAMEERLKHRKVLIFIDDLDDQ--DVLDALAGQTQWFGSGSRIIVITKDKHFLRAHGIDHIYEVCLPSNELALEM 359 (1153)
T ss_pred ----HHHHHHHHhCCeEEEEEeCCCCH--HHHHHHHhhCccCCCCcEEEEEeCcHHHHHhcCCCeEEEecCCCHHHHHHH
Confidence 14567788999999999999875 467777776666678999999999999998877788999999999999999
Q ss_pred HHHhhcCCCCCchhhHHHHHHHHHHHhcCCChhHHHHHHhhhcCCCCHHHHHHHHhccccccccccccchhhHHhhhccC
Q 002308 322 FKRLAFFGRSTEECEKLEQIGQRIARKCKGLPLAAKTMGSLMSSKKTEEEWKRILNSDLWKVEEIEKGVLTPLWLSYNDL 401 (938)
Q Consensus 322 f~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~~~~~l~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~l~~sy~~L 401 (938)
|.++||+... .++.+.+++++|+++|+|+|||++++|++|+.+ +..+|..++...... ....+..++++||+.|
T Consensus 360 F~~~Af~~~~--~~~~~~~l~~~iv~~c~GLPLAl~vlgs~L~~k-~~~~W~~~l~~L~~~---~~~~I~~~L~~SYd~L 433 (1153)
T PLN03210 360 FCRSAFKKNS--PPDGFMELASEVALRAGNLPLGLNVLGSYLRGR-DKEDWMDMLPRLRNG---LDGKIEKTLRVSYDGL 433 (1153)
T ss_pred HHHHhcCCCC--CcHHHHHHHHHHHHHhCCCcHHHHHHHHHHcCC-CHHHHHHHHHHHHhC---ccHHHHHHHHHhhhcc
Confidence 9999997643 345788999999999999999999999999865 789999998764432 2346899999999999
Q ss_pred Ch-hHHHHHhHhccCCCCcccChHHHHHHHHHcCCCcchhccccchHHHHHHHHHHHHHhcccccccccCCCCceeEEEe
Q 002308 402 PS-RVKRCFSYCAVFPKDYNIKKDELITLWMAQGYLSAEAAEQDEEMETIGEEYFGILASRSFFQEFKKSYDNRIIACKM 480 (938)
Q Consensus 402 ~~-~~k~~f~~~~~fp~~~~i~~~~li~~w~a~g~i~~~~~~~~~~~~~~~~~~~~~L~~~~ll~~~~~~~~~~~~~~~m 480 (938)
++ ..|.||+++|+||.+..+ ..+..|++.+.... +..++.|++++|++... + .+.|
T Consensus 434 ~~~~~k~~Fl~ia~ff~~~~~---~~v~~~l~~~~~~~-------------~~~l~~L~~ksLi~~~~----~---~~~M 490 (1153)
T PLN03210 434 NNKKDKAIFRHIACLFNGEKV---NDIKLLLANSDLDV-------------NIGLKNLVDKSLIHVRE----D---IVEM 490 (1153)
T ss_pred CccchhhhhheehhhcCCCCH---HHHHHHHHhcCCCc-------------hhChHHHHhcCCEEEcC----C---eEEh
Confidence 87 599999999999988654 34667777655433 11388899999997632 2 3799
Q ss_pred chhHHHHHHHhhcccc-------eEEeeCCcccccCCCCcccccceEEEEccCCCc---CcccccccCceeEEeccCCCC
Q 002308 481 HDMVHDLAQFVSENEC-------FSLEVNGSEELNVPNSLDEKVRHLMLIMGKEST---FPISTCRAKRIRSLLIEWPEF 550 (938)
Q Consensus 481 hdlv~~~~~~~~~~e~-------~~~~~~~~~~~~~~~~~~~~~r~l~l~~~~~~~---~~~~~~~~~~Lr~L~l~~~~~ 550 (938)
||++|++++.++.++. +.+...+.......+....+++.+++..+.+.. ...+|..+++|+.|.+..+..
T Consensus 491 HdLl~~~~r~i~~~~~~~~~~r~~l~~~~di~~vl~~~~g~~~v~~i~l~~~~~~~~~i~~~aF~~m~~L~~L~~~~~~~ 570 (1153)
T PLN03210 491 HSLLQEMGKEIVRAQSNEPGEREFLVDAKDICDVLEDNTGTKKVLGITLDIDEIDELHIHENAFKGMRNLLFLKFYTKKW 570 (1153)
T ss_pred hhHHHHHHHHHHHhhcCCCCcceeEeCHHHHHHHHHhCcccceeeEEEeccCccceeeecHHHHhcCccccEEEEecccc
Confidence 9999999999987653 222111111111123445678888887666543 345688899999998876542
Q ss_pred CC-CCchhhHHHHHhccC-CCeeEEecCCCCCCcccCccccccCCCCeeeecCCccccccccccCCCCccEEEcCCCCCc
Q 002308 551 GH-SSLNGEILEELFRES-TSLRALDFPSFYLPLEIPRNIEKLVHLRYLNLSDQKIKKLPETLCELYNLEKLDISGCSDL 628 (938)
Q Consensus 551 ~~-~~~~~~~~~~~~~~~-~~Lr~L~L~~n~~~~~lp~~~~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~l~~~~~l 628 (938)
.. ......++.. |..+ .+||.|++.++. ...+|..+ .+.+|++|++++|.+..+|..+..+++|+.|++++|..+
T Consensus 571 ~~~~~~~~~lp~~-~~~lp~~Lr~L~~~~~~-l~~lP~~f-~~~~L~~L~L~~s~l~~L~~~~~~l~~Lk~L~Ls~~~~l 647 (1153)
T PLN03210 571 DQKKEVRWHLPEG-FDYLPPKLRLLRWDKYP-LRCMPSNF-RPENLVKLQMQGSKLEKLWDGVHSLTGLRNIDLRGSKNL 647 (1153)
T ss_pred cccccceeecCcc-hhhcCcccEEEEecCCC-CCCCCCcC-CccCCcEEECcCccccccccccccCCCCCEEECCCCCCc
Confidence 11 1111122333 3333 468999998887 67778777 467889999999888888888888999999999888777
Q ss_pred ccccccccccCccceeecCCCcccccCCccCCCCCCCcccCeeEecCCCCCCCCcccccccccccccCcceeecCcCCCC
Q 002308 629 RELPKGIGKLINMKHLLNSGTRSLRYMPVGIGRLTGLRTLGEFHVSAGGGVDGSKACRLESLKNLEHLQVCCIRRLGDVS 708 (938)
Q Consensus 629 ~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~ 708 (938)
..+|. +..+++|+.|++++|..+..+|..++++++|+.|++.+|.....++.. + ++++|+.|.+.+|..+...+
T Consensus 648 ~~ip~-ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~----i-~l~sL~~L~Lsgc~~L~~~p 721 (1153)
T PLN03210 648 KEIPD-LSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTG----I-NLKSLYRLNLSGCSRLKSFP 721 (1153)
T ss_pred CcCCc-cccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCc----C-CCCCCCEEeCCCCCCccccc
Confidence 77775 788889999999888888888888888889999888876544433322 2 57778888887776544333
Q ss_pred ChhhhhhhhccCCCcCCceEEEEecCCCCCCCCC-c-----------------cchHHHHhhCCCCCCCCeEEEeeecCC
Q 002308 709 DVGEAKLLELDKKKYLSRLRLEFDKKGGGGGRRK-N-----------------EDDQLLLEALQPPLNLKELEIHYYGGN 770 (938)
Q Consensus 709 ~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~-~-----------------~~~~~~~~~l~~~~~L~~L~l~~~~~~ 770 (938)
. ...+|+.|+|++|.+...+.... . ......+.....+++|+.|++++|...
T Consensus 722 ~----------~~~nL~~L~L~~n~i~~lP~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l 791 (1153)
T PLN03210 722 D----------ISTNISWLDLDETAIEEFPSNLRLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSL 791 (1153)
T ss_pred c----------ccCCcCeeecCCCccccccccccccccccccccccchhhccccccccchhhhhccccchheeCCCCCCc
Confidence 2 12456667776665433100000 0 000000001112345666666665544
Q ss_pred CCCCCchhccCCCCEEEEecCCCCCcCCCCCCCCccceeecccccCceEeCcccccCCCCCCCCCCCCcccccCCcccee
Q 002308 771 TVFPSWMASLTNLKSLDLCFCENCEQLPPLGKLPSLEQLFISYMSSVKRVGDEFLGVESDRHDSSSSSSVIIAFPKLKSL 850 (938)
Q Consensus 771 ~~~p~~~~~l~~L~~L~L~~~~~~~~l~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~L~~L 850 (938)
..+|.+++++++|+.|+|++|...+.+|...++++|+.|++++|..+..+|. ..++|+.|
T Consensus 792 ~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~~L~sL~~L~Ls~c~~L~~~p~--------------------~~~nL~~L 851 (1153)
T PLN03210 792 VELPSSIQNLHKLEHLEIENCINLETLPTGINLESLESLDLSGCSRLRTFPD--------------------ISTNISDL 851 (1153)
T ss_pred cccChhhhCCCCCCEEECCCCCCcCeeCCCCCccccCEEECCCCCccccccc--------------------cccccCEe
Confidence 4456666666666666666665555555533556666666666654443332 12356666
Q ss_pred eccccccccccccccccccccccccccccceecccccccccCCCCCCCCCCCcCEEEEecCcchHH
Q 002308 851 SIFEMEELEEWDYGITRTGNTFINIMPRLSSLTINYCSKLKALPDHIHQTTTLKELRIGECDLLEE 916 (938)
Q Consensus 851 ~l~~~~~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~~l~~ 916 (938)
.+.++ .++.++. .+..+++|+.|+|++|++++.+|..+..+++|+.+++++|+.++.
T Consensus 852 ~Ls~n-~i~~iP~--------si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C~~L~~ 908 (1153)
T PLN03210 852 NLSRT-GIEEVPW--------WIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDCGALTE 908 (1153)
T ss_pred ECCCC-CCccChH--------HHhcCCCCCEEECCCCCCcCccCcccccccCCCeeecCCCccccc
Confidence 66653 3333332 234688888888888888888888778888888888888887764
No 3
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=100.00 E-value=1.9e-41 Score=361.07 Aligned_cols=277 Identities=37% Similarity=0.625 Sum_probs=223.8
Q ss_pred chhhHHHHHHHHhccCcccCCCeEEEEEEccCCChHHHHHHHHhhhhhhhcccCeEEEEEeCCCCCHHHHHHHHHHHhcC
Q 002308 155 RVGERNALLSMLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNHVEVKREFDKTLWVCVSETFDEFRIAKAMLEALTG 234 (938)
Q Consensus 155 r~~~~~~l~~~l~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~ 234 (938)
|+.++++|.+.|.... .+.++|+|+||||+||||||.+++++...+.+|+.++|+.++...+...++..|+.++..
T Consensus 1 re~~~~~l~~~L~~~~----~~~~~v~I~G~~G~GKT~LA~~~~~~~~~~~~f~~v~wv~~~~~~~~~~~~~~i~~~l~~ 76 (287)
T PF00931_consen 1 REKEIEKLKDWLLDNS----NEVRVVAIVGMGGIGKTTLARQVARDLRIKNRFDGVIWVSLSKNPSLEQLLEQILRQLGE 76 (287)
T ss_dssp -HHHHHHHHHHHHTTT----TSSEEEEEEESTTSSHHHHHHHHHCHHHHCCCCTEEEEEEEES-SCCHHHHHHHHHHHTC
T ss_pred CHHHHHHHHHHhhCCC----CCeEEEEEEcCCcCCcceeeeecccccccccccccccccccccccccccccccccccccc
Confidence 7899999999998643 478999999999999999999999987789999999999999999999999999999987
Q ss_pred CCC---CCCcHHHHHHHHHHHhcCceEEEEEecCCCCCccChhHHHHhhhCCCCCcEEEEEcCChhhhhhhcC-CceEeC
Q 002308 235 STS---NLNALQSLLISIDESIAGKRFLLVLDDVWDGDYIKWEPFYRCLKKGLHGSKILITTRKESIVSMMRS-TDIISI 310 (938)
Q Consensus 235 ~~~---~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtr~~~v~~~~~~-~~~~~l 310 (938)
... ...+.++....+.+.+.++++||||||||+.. .|+.+...++....|++||||||+..++..++. ...+++
T Consensus 77 ~~~~~~~~~~~~~~~~~l~~~L~~~~~LlVlDdv~~~~--~~~~l~~~~~~~~~~~kilvTTR~~~v~~~~~~~~~~~~l 154 (287)
T PF00931_consen 77 PDSSISDPKDIEELQDQLRELLKDKRCLLVLDDVWDEE--DLEELREPLPSFSSGSKILVTTRDRSVAGSLGGTDKVIEL 154 (287)
T ss_dssp C-STSSCCSSHHHHHHHHHHHHCCTSEEEEEEEE-SHH--HH-------HCHHSS-EEEEEESCGGGGTTHHSCEEEEEC
T ss_pred cccccccccccccccccchhhhccccceeeeeeecccc--cccccccccccccccccccccccccccccccccccccccc
Confidence 643 45677889999999999999999999999763 788888888877789999999999998877665 679999
Q ss_pred CCCChHHHHHHHHHhhcCCCCCchhhHHHHHHHHHHHhcCCChhHHHHHHhhhcCCCCHHHHHHHHhccccccc---ccc
Q 002308 311 EELAEEECWVLFKRLAFFGRSTEECEKLEQIGQRIARKCKGLPLAAKTMGSLMSSKKTEEEWKRILNSDLWKVE---EIE 387 (938)
Q Consensus 311 ~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~~~~~l~~~~~~~~w~~~~~~~~~~~~---~~~ 387 (938)
++|+.++|++||.+.++... ....+...+++++|+++|+|+|||+.++|++|+.+.+..+|..+++....... ...
T Consensus 155 ~~L~~~ea~~L~~~~~~~~~-~~~~~~~~~~~~~i~~~c~glPLal~~~a~~l~~~~~~~~w~~~~~~l~~~~~~~~~~~ 233 (287)
T PF00931_consen 155 EPLSEEEALELFKKRAGRKE-SESPEDLEDLAKEIVEKCGGLPLALKLIASYLRSKSTVDEWEEALEELENSLRESRDYD 233 (287)
T ss_dssp SS--HHHHHHHHHHHHTSHS-----TTSCTHHHHHHHHTTT-HHHHHHHHHHHHHHHSSSSHHHHHHHHHHCHTCSSGSC
T ss_pred cccccccccccccccccccc-ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 99999999999999987554 12234455678999999999999999999999665567789888765433332 234
Q ss_pred ccchhhHHhhhccCChhHHHHHhHhccCCCCcccChHHHHHHHHHcCCCcc
Q 002308 388 KGVLTPLWLSYNDLPSRVKRCFSYCAVFPKDYNIKKDELITLWMAQGYLSA 438 (938)
Q Consensus 388 ~~~~~~l~~sy~~L~~~~k~~f~~~~~fp~~~~i~~~~li~~w~a~g~i~~ 438 (938)
..+..++.+||+.||++.|.||+|||+||+++.|+.+.++++|+++|++..
T Consensus 234 ~~~~~~l~~s~~~L~~~~~~~f~~L~~f~~~~~i~~~~li~lW~~e~~i~~ 284 (287)
T PF00931_consen 234 RSVFSALELSYDSLPDELRRCFLYLSIFPEGVPIPRERLIRLWVAEGFISS 284 (287)
T ss_dssp HHHHHHHHHHHHSSHTCCHHHHHHGGGSGTTS-EEHHHHHHHHTT-HHTC-
T ss_pred ccccccceechhcCCccHHHHHhhCcCCCCCceECHHHHHHHHHHCCCCcc
Confidence 568899999999999999999999999999999999999999999999976
No 4
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.96 E-value=8.7e-30 Score=317.92 Aligned_cols=374 Identities=20% Similarity=0.194 Sum_probs=174.0
Q ss_pred cccceEEEEccCCCc-CcccccccCceeEEeccCCCCCCCCchhhHHHHHhccCCCeeEEecCCCCCCcccCccccccCC
Q 002308 515 EKVRHLMLIMGKEST-FPISTCRAKRIRSLLIEWPEFGHSSLNGEILEELFRESTSLRALDFPSFYLPLEIPRNIEKLVH 593 (938)
Q Consensus 515 ~~~r~l~l~~~~~~~-~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~n~~~~~lp~~~~~l~~ 593 (938)
..++.+++++|.+.. .|..+..+++|+.|++++|.+. +. .+..+.++++|++|+|++|.+.+.+|..++++++
T Consensus 140 ~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~-----~~-~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~ 213 (968)
T PLN00113 140 PNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLV-----GK-IPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKS 213 (968)
T ss_pred CCCCEEECcCCcccccCChHHhcCCCCCEEECccCccc-----cc-CChhhhhCcCCCeeeccCCCCcCcCChHHcCcCC
Confidence 455555555555542 4445555566666655555431 11 1222455555555555555554555555555555
Q ss_pred CCeeeecCCccc-cccccccCCCCccEEEcCCCCCcccccccccccCccceeecCCCcccccCCccCCCCCCCcccCeeE
Q 002308 594 LRYLNLSDQKIK-KLPETLCELYNLEKLDISGCSDLRELPKGIGKLINMKHLLNSGTRSLRYMPVGIGRLTGLRTLGEFH 672 (938)
Q Consensus 594 L~~L~L~~~~i~-~lp~~i~~l~~L~~L~l~~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~ 672 (938)
|++|+|++|.+. .+|..++++++|++|++++|.....+|..+.++++|++|++++|.....+|..+.++++|+.|++++
T Consensus 214 L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~ 293 (968)
T PLN00113 214 LKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSD 293 (968)
T ss_pred ccEEECcCCccCCcCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcC
Confidence 555555555554 4555555555555555555554445555555555555555555544444555555555555555555
Q ss_pred ecCCCCCCCCcccccccccccccCcceeecCcCCCCChhhhhhhhccCCCcCCceEEEEecCCCCCCCC-----------
Q 002308 673 VSAGGGVDGSKACRLESLKNLEHLQVCCIRRLGDVSDVGEAKLLELDKKKYLSRLRLEFDKKGGGGGRR----------- 741 (938)
Q Consensus 673 ~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~----------- 741 (938)
|.+....+ ..+..+++|+.|++.+|...+..+. .+..+++|+.|++++|.+.......
T Consensus 294 n~l~~~~p----~~~~~l~~L~~L~l~~n~~~~~~~~-------~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~ 362 (968)
T PLN00113 294 NSLSGEIP----ELVIQLQNLEILHLFSNNFTGKIPV-------ALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLD 362 (968)
T ss_pred CeeccCCC----hhHcCCCCCcEEECCCCccCCcCCh-------hHhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEE
Confidence 54433222 1234455555555555544333322 3444555555555555443200000
Q ss_pred --CccchHHHHhhCCCCCCCCeEEEeeecCCCCCCCchhccCCCCEEEEecCCCCCcCCC-CCCCCccceeecccccCce
Q 002308 742 --KNEDDQLLLEALQPPLNLKELEIHYYGGNTVFPSWMASLTNLKSLDLCFCENCEQLPP-LGKLPSLEQLFISYMSSVK 818 (938)
Q Consensus 742 --~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~l~~-l~~l~~L~~L~L~~~~~l~ 818 (938)
.+.....++..+..+++|+.|++++|.+.+.+|.++..+++|+.|+|++|.+.+.+|. +..+++|+.|++++|....
T Consensus 363 Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~ 442 (968)
T PLN00113 363 LSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQG 442 (968)
T ss_pred CCCCeeEeeCChhHhCcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeECChhHhcCCCCCEEECcCCcccC
Confidence 0000001222233334444444444444444444444455555555555544444443 4555555555555554333
Q ss_pred EeCcccccCCCCCCCCCCCCcccccC------CccceeeccccccccccccccccccccccccccccceecccccccccC
Q 002308 819 RVGDEFLGVESDRHDSSSSSSVIIAF------PKLKSLSIFEMEELEEWDYGITRTGNTFINIMPRLSSLTINYCSKLKA 892 (938)
Q Consensus 819 ~~~~~~~~~~~l~~~~~~~~~~~~~~------~~L~~L~l~~~~~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~ 892 (938)
.++..+.....++.++++.|...+.+ ++|+.|+++++.- ....+..+..+++|+.|+|++|.....
T Consensus 443 ~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~~~~~L~~L~ls~n~l--------~~~~~~~~~~l~~L~~L~Ls~N~l~~~ 514 (968)
T PLN00113 443 RINSRKWDMPSLQMLSLARNKFFGGLPDSFGSKRLENLDLSRNQF--------SGAVPRKLGSLSELMQLKLSENKLSGE 514 (968)
T ss_pred ccChhhccCCCCcEEECcCceeeeecCcccccccceEEECcCCcc--------CCccChhhhhhhccCEEECcCCcceee
Confidence 33333334444444444444432222 2344444443321 011122233444555555555443334
Q ss_pred CCCCCCCCCCcCEEEEecCcc
Q 002308 893 LPDHIHQTTTLKELRIGECDL 913 (938)
Q Consensus 893 lp~~l~~l~~L~~L~l~~c~~ 913 (938)
+|..+.++++|++|+|++|..
T Consensus 515 ~p~~~~~l~~L~~L~Ls~N~l 535 (968)
T PLN00113 515 IPDELSSCKKLVSLDLSHNQL 535 (968)
T ss_pred CChHHcCccCCCEEECCCCcc
Confidence 444444444444444444443
No 5
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.96 E-value=3.7e-29 Score=312.29 Aligned_cols=362 Identities=20% Similarity=0.219 Sum_probs=224.4
Q ss_pred cccceEEEEccCCC-cCccccc-ccCceeEEeccCCCCCCCCchhhHHHHHhccCCCeeEEecCCCCCCcccCccccccC
Q 002308 515 EKVRHLMLIMGKES-TFPISTC-RAKRIRSLLIEWPEFGHSSLNGEILEELFRESTSLRALDFPSFYLPLEIPRNIEKLV 592 (938)
Q Consensus 515 ~~~r~l~l~~~~~~-~~~~~~~-~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~n~~~~~lp~~~~~l~ 592 (938)
+.++.|++++|.+. .+|..+. .+++|+.|++++|.+. +.++ ...+++|++|+|++|.+.+.+|..+++++
T Consensus 93 ~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~-----~~~p---~~~l~~L~~L~Ls~n~~~~~~p~~~~~l~ 164 (968)
T PLN00113 93 PYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFT-----GSIP---RGSIPNLETLDLSNNMLSGEIPNDIGSFS 164 (968)
T ss_pred CCCCEEECCCCccCCcCChHHhccCCCCCEEECcCCccc-----cccC---ccccCCCCEEECcCCcccccCChHHhcCC
Confidence 34455555554443 2333322 4455555555444331 1111 12345555555555554445566666666
Q ss_pred CCCeeeecCCccc-cccccccCCCCccEEEcCCCCCcccccccccccCccceeecCCCcccccCCccCCCCCCCcccCee
Q 002308 593 HLRYLNLSDQKIK-KLPETLCELYNLEKLDISGCSDLRELPKGIGKLINMKHLLNSGTRSLRYMPVGIGRLTGLRTLGEF 671 (938)
Q Consensus 593 ~L~~L~L~~~~i~-~lp~~i~~l~~L~~L~l~~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~ 671 (938)
+|++|+|++|.+. .+|..++++++|++|++++|.....+|..++++++|++|++++|.....+|..++++++|+.|+++
T Consensus 165 ~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~ 244 (968)
T PLN00113 165 SLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLV 244 (968)
T ss_pred CCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECc
Confidence 6666666666654 556666666666666666666555566666666666666666665555566666666666666666
Q ss_pred EecCCCCCCCCcccccccccccccCcceeecCcCCCCChhhhhhhhccCCCcCCceEEEEecCCCCCCCCCccchHHHHh
Q 002308 672 HVSAGGGVDGSKACRLESLKNLEHLQVCCIRRLGDVSDVGEAKLLELDKKKYLSRLRLEFDKKGGGGGRRKNEDDQLLLE 751 (938)
Q Consensus 672 ~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~ 751 (938)
+|.+....+ ..+..+++|+.|++.+|...+..+. .+..+++|+.|++++|.+.. .++.
T Consensus 245 ~n~l~~~~p----~~l~~l~~L~~L~L~~n~l~~~~p~-------~l~~l~~L~~L~Ls~n~l~~-----------~~p~ 302 (968)
T PLN00113 245 YNNLTGPIP----SSLGNLKNLQYLFLYQNKLSGPIPP-------SIFSLQKLISLDLSDNSLSG-----------EIPE 302 (968)
T ss_pred CceeccccC----hhHhCCCCCCEEECcCCeeeccCch-------hHhhccCcCEEECcCCeecc-----------CCCh
Confidence 665543222 2355566666666666555443332 34556667777777665542 2445
Q ss_pred hCCCCCCCCeEEEeeecCCCCCCCchhccCCCCEEEEecCCCCCcCCC-CCCCCccceeecccccCceEeCcccccCCCC
Q 002308 752 ALQPPLNLKELEIHYYGGNTVFPSWMASLTNLKSLDLCFCENCEQLPP-LGKLPSLEQLFISYMSSVKRVGDEFLGVESD 830 (938)
Q Consensus 752 ~l~~~~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~l~~-l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~l 830 (938)
.+..+++|+.|++++|.+.+.+|.++..+++|+.|+|++|.+...+|. ++.+++|+.|++++|.....+|..+.....+
T Consensus 303 ~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L 382 (968)
T PLN00113 303 LVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNL 382 (968)
T ss_pred hHcCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCChhHhCcCCC
Confidence 566677888888888877776777777888888888888877766665 7778888888888887555666666666666
Q ss_pred CCCCCCCCccc-------ccCCccceeeccccccccccccccccccccccccccccceecccccccccCCCCCCCCCCCc
Q 002308 831 RHDSSSSSSVI-------IAFPKLKSLSIFEMEELEEWDYGITRTGNTFINIMPRLSSLTINYCSKLKALPDHIHQTTTL 903 (938)
Q Consensus 831 ~~~~~~~~~~~-------~~~~~L~~L~l~~~~~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L 903 (938)
..++++.|... ..+++|+.|.+.++.-- ...+..+..+++|+.|++++|.....+|..+..+++|
T Consensus 383 ~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~--------~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L 454 (968)
T PLN00113 383 FKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFS--------GELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSL 454 (968)
T ss_pred CEEECcCCEecccCCHHHhCCCCCCEEECcCCEee--------eECChhHhcCCCCCEEECcCCcccCccChhhccCCCC
Confidence 66666665543 23556777777665411 1123335578899999999887666677777788999
Q ss_pred CEEEEecCcch
Q 002308 904 KELRIGECDLL 914 (938)
Q Consensus 904 ~~L~l~~c~~l 914 (938)
+.|++++|+..
T Consensus 455 ~~L~L~~n~~~ 465 (968)
T PLN00113 455 QMLSLARNKFF 465 (968)
T ss_pred cEEECcCceee
Confidence 99999998864
No 6
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.92 E-value=1.8e-26 Score=240.92 Aligned_cols=362 Identities=18% Similarity=0.154 Sum_probs=170.7
Q ss_pred CcccccceEEEEccCCCcC-cccccccCceeEEeccCCCCCCCCchhhHHHHHhccCCCeeEEecCCCCCCcccCccccc
Q 002308 512 SLDEKVRHLMLIMGKESTF-PISTCRAKRIRSLLIEWPEFGHSSLNGEILEELFRESTSLRALDFPSFYLPLEIPRNIEK 590 (938)
Q Consensus 512 ~~~~~~r~l~l~~~~~~~~-~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~n~~~~~lp~~~~~ 590 (938)
-.+...+.|++++|.+... +..|.++++|+.+.+..|.+. . .|.+.....+|+.|+|.+|.+...-.+.+..
T Consensus 75 ~lp~~t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt------~-IP~f~~~sghl~~L~L~~N~I~sv~se~L~~ 147 (873)
T KOG4194|consen 75 FLPSQTQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELT------R-IPRFGHESGHLEKLDLRHNLISSVTSEELSA 147 (873)
T ss_pred cCccceeeeeccccccccCcHHHHhcCCcceeeeeccchhh------h-cccccccccceeEEeeeccccccccHHHHHh
Confidence 4456777788888877653 345667777777777777541 1 1221222333555555555433323333444
Q ss_pred cCCCCeeeecCCccccccc-cccCCCCccEEEcCCCCCcccccccccccCccceeecCCCcccccCCccCCCCCCCcccC
Q 002308 591 LVHLRYLNLSDQKIKKLPE-TLCELYNLEKLDISGCSDLRELPKGIGKLINMKHLLNSGTRSLRYMPVGIGRLTGLRTLG 669 (938)
Q Consensus 591 l~~L~~L~L~~~~i~~lp~-~i~~l~~L~~L~l~~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~ 669 (938)
++.||.||||.|.|+.+|. ++..-.++++|+|++|.+...--..|..+.+|..|.|+.|.+...-+..|.+|++|+.|+
T Consensus 148 l~alrslDLSrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~Ld 227 (873)
T KOG4194|consen 148 LPALRSLDLSRNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLD 227 (873)
T ss_pred HhhhhhhhhhhchhhcccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCcccccCHHHhhhcchhhhhh
Confidence 4455555555555554443 233334455555555543332233344444555555555433322223344455555555
Q ss_pred eeEecCCCCCCCCcccccccccccccCcceeecCcCCCCChhhhhhhhccCCCcCCceEEEEecCCCCCCCCCccchHHH
Q 002308 670 EFHVSAGGGVDGSKACRLESLKNLEHLQVCCIRRLGDVSDVGEAKLLELDKKKYLSRLRLEFDKKGGGGGRRKNEDDQLL 749 (938)
Q Consensus 670 l~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~ 749 (938)
+..|.+.-.. +..|..|++|+.|.+..|.+...... .+..+.+++.|+|+.|.+.. --
T Consensus 228 LnrN~irive----~ltFqgL~Sl~nlklqrN~I~kL~DG-------~Fy~l~kme~l~L~~N~l~~-----------vn 285 (873)
T KOG4194|consen 228 LNRNRIRIVE----GLTFQGLPSLQNLKLQRNDISKLDDG-------AFYGLEKMEHLNLETNRLQA-----------VN 285 (873)
T ss_pred ccccceeeeh----hhhhcCchhhhhhhhhhcCcccccCc-------ceeeecccceeecccchhhh-----------hh
Confidence 5444432200 11244445555555444433322222 34444455555555554432 01
Q ss_pred HhhCCCCCCCCeEEEeeecCCCCCCCchhccCCCCEEEEecCCCCCcCCC-CCCCCccceeecccccCceEeCc-ccccC
Q 002308 750 LEALQPPLNLKELEIHYYGGNTVFPSWMASLTNLKSLDLCFCENCEQLPP-LGKLPSLEQLFISYMSSVKRVGD-EFLGV 827 (938)
Q Consensus 750 ~~~l~~~~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~l~~-l~~l~~L~~L~L~~~~~l~~~~~-~~~~~ 827 (938)
..++..++.|+.|++++|.|....++....+++|+.|+|++|.+...-+. +..|..|+.|+|++|+ +..+.+ .|.+.
T Consensus 286 ~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Ns-i~~l~e~af~~l 364 (873)
T KOG4194|consen 286 EGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNS-IDHLAEGAFVGL 364 (873)
T ss_pred cccccccchhhhhccchhhhheeecchhhhcccceeEeccccccccCChhHHHHHHHhhhhcccccc-hHHHHhhHHHHh
Confidence 12334444555555555554443333334444555555555543332222 4444455555555544 333222 12223
Q ss_pred CCCCCCCCCCCcc----------cccCCccceeeccccccccccccccccccccccccccccceecccccccccCCCCCC
Q 002308 828 ESDRHDSSSSSSV----------IIAFPKLKSLSIFEMEELEEWDYGITRTGNTFINIMPRLSSLTINYCSKLKALPDHI 897 (938)
Q Consensus 828 ~~l~~~~~~~~~~----------~~~~~~L~~L~l~~~~~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~l 897 (938)
.++..++++.|.+ ..++|+|+.|.+.++ +|+.++. ..+..+++|++|+|.+|..-..=|..+
T Consensus 365 ssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gN-qlk~I~k-------rAfsgl~~LE~LdL~~NaiaSIq~nAF 436 (873)
T KOG4194|consen 365 SSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGN-QLKSIPK-------RAFSGLEALEHLDLGDNAIASIQPNAF 436 (873)
T ss_pred hhhhhhcCcCCeEEEEEecchhhhccchhhhheeecCc-eeeecch-------hhhccCcccceecCCCCcceeeccccc
Confidence 3333333333321 135677777777764 3444442 224467777777777765433335555
Q ss_pred CCCCCcCEEEEecCc
Q 002308 898 HQTTTLKELRIGECD 912 (938)
Q Consensus 898 ~~l~~L~~L~l~~c~ 912 (938)
..+ .|++|.+..-.
T Consensus 437 e~m-~Lk~Lv~nSss 450 (873)
T KOG4194|consen 437 EPM-ELKELVMNSSS 450 (873)
T ss_pred ccc-hhhhhhhcccc
Confidence 555 77777665433
No 7
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.92 E-value=2.3e-27 Score=248.87 Aligned_cols=277 Identities=23% Similarity=0.236 Sum_probs=201.3
Q ss_pred cccceEEEEccCCCcCcccccccCceeEEeccCCCCCCCCchhhHHHHHhccCCCeeEEecCCCCCCcccCccccccCCC
Q 002308 515 EKVRHLMLIMGKESTFPISTCRAKRIRSLLIEWPEFGHSSLNGEILEELFRESTSLRALDFPSFYLPLEIPRNIEKLVHL 594 (938)
Q Consensus 515 ~~~r~l~l~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~n~~~~~lp~~~~~l~~L 594 (938)
.+++|+++.+|++..+...+..+|.||++.+..|.+-.. .+|+++| ++..|.+|||++|. ....|..+..-+++
T Consensus 55 qkLEHLs~~HN~L~~vhGELs~Lp~LRsv~~R~N~LKns----GiP~diF-~l~dLt~lDLShNq-L~EvP~~LE~AKn~ 128 (1255)
T KOG0444|consen 55 QKLEHLSMAHNQLISVHGELSDLPRLRSVIVRDNNLKNS----GIPTDIF-RLKDLTILDLSHNQ-LREVPTNLEYAKNS 128 (1255)
T ss_pred hhhhhhhhhhhhhHhhhhhhccchhhHHHhhhccccccC----CCCchhc-ccccceeeecchhh-hhhcchhhhhhcCc
Confidence 578888888888888888888888999988888876433 3455544 57888899999988 77788888888888
Q ss_pred CeeeecCCcccccccc-ccCCCCccEEEcCCCCCcccccccccccCccceeecCCCcccccCCccCCCCCCCcccCeeEe
Q 002308 595 RYLNLSDQKIKKLPET-LCELYNLEKLDISGCSDLRELPKGIGKLINMKHLLNSGTRSLRYMPVGIGRLTGLRTLGEFHV 673 (938)
Q Consensus 595 ~~L~L~~~~i~~lp~~-i~~l~~L~~L~l~~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~ 673 (938)
-.|+||+|+|..+|.. +-+|+.|-.||||+|+ ++.+|+.+..|.+|+.|.|++|++...--..+..|++|++|.+++.
T Consensus 129 iVLNLS~N~IetIPn~lfinLtDLLfLDLS~Nr-Le~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~T 207 (1255)
T KOG0444|consen 129 IVLNLSYNNIETIPNSLFINLTDLLFLDLSNNR-LEMLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNT 207 (1255)
T ss_pred EEEEcccCccccCCchHHHhhHhHhhhccccch-hhhcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccc
Confidence 8899999998888875 5688888889999888 8888888888888999999888665433334456777788877765
Q ss_pred cCCCCCCCCcccccccccccccCcceeecCcCCCCChhhhhhhhccCCCcCCceEEEEecCCCCCCCCCccchHHHHhhC
Q 002308 674 SAGGGVDGSKACRLESLKNLEHLQVCCIRRLGDVSDVGEAKLLELDKKKYLSRLRLEFDKKGGGGGRRKNEDDQLLLEAL 753 (938)
Q Consensus 674 ~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l 753 (938)
+.+- ..++.++..+.+|..++++.|..... |. .+..+.+|+.|+|++|.++. +.-..
T Consensus 208 qRTl---~N~Ptsld~l~NL~dvDlS~N~Lp~v-Pe-------cly~l~~LrrLNLS~N~ite------------L~~~~ 264 (1255)
T KOG0444|consen 208 QRTL---DNIPTSLDDLHNLRDVDLSENNLPIV-PE-------CLYKLRNLRRLNLSGNKITE------------LNMTE 264 (1255)
T ss_pred cchh---hcCCCchhhhhhhhhccccccCCCcc-hH-------HHhhhhhhheeccCcCceee------------eeccH
Confidence 4332 11233466777788888877765432 22 56677778888888877654 22222
Q ss_pred CCCCCCCeEEEeeecCCCCCCCchhccCCCCEEEEecCCCC-CcCCC-CCCCCccceeecccccCceEeCcc
Q 002308 754 QPPLNLKELEIHYYGGNTVFPSWMASLTNLKSLDLCFCENC-EQLPP-LGKLPSLEQLFISYMSSVKRVGDE 823 (938)
Q Consensus 754 ~~~~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~-~~l~~-l~~l~~L~~L~L~~~~~l~~~~~~ 823 (938)
....+|++|+++.|.++. +|+.++.++.|+.|.+.+|++. +.+|+ +|.+.+|+.+...+|. ++-+|..
T Consensus 265 ~~W~~lEtLNlSrNQLt~-LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~-LElVPEg 334 (1255)
T KOG0444|consen 265 GEWENLETLNLSRNQLTV-LPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNK-LELVPEG 334 (1255)
T ss_pred HHHhhhhhhccccchhcc-chHHHhhhHHHHHHHhccCcccccCCccchhhhhhhHHHHhhccc-cccCchh
Confidence 334577778888888777 7887778888888888777643 34555 7777788887777765 6655544
No 8
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.92 E-value=1.5e-27 Score=250.28 Aligned_cols=338 Identities=22% Similarity=0.241 Sum_probs=235.9
Q ss_pred cccceEEEEccCCCcCcccccccCceeEEeccCCCCCCCCchhhHHHHHhccCCCeeEEecCCCCCCc-ccCccccccCC
Q 002308 515 EKVRHLMLIMGKESTFPISTCRAKRIRSLLIEWPEFGHSSLNGEILEELFRESTSLRALDFPSFYLPL-EIPRNIEKLVH 593 (938)
Q Consensus 515 ~~~r~l~l~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~n~~~~-~lp~~~~~l~~ 593 (938)
..++.+.+....+..+|..+..+.+|..|.+..|.+ ..+. .-+..++.||.+++..|++-. -+|..+-.|..
T Consensus 32 t~~~WLkLnrt~L~~vPeEL~~lqkLEHLs~~HN~L------~~vh-GELs~Lp~LRsv~~R~N~LKnsGiP~diF~l~d 104 (1255)
T KOG0444|consen 32 TQMTWLKLNRTKLEQVPEELSRLQKLEHLSMAHNQL------ISVH-GELSDLPRLRSVIVRDNNLKNSGIPTDIFRLKD 104 (1255)
T ss_pred hheeEEEechhhhhhChHHHHHHhhhhhhhhhhhhh------Hhhh-hhhccchhhHHHhhhccccccCCCCchhccccc
Confidence 345566666666666677777777777776666653 1111 125667777777777777432 27777778888
Q ss_pred CCeeeecCCccccccccccCCCCccEEEcCCCCCccccccc-ccccCccceeecCCCcccccCCccCCCCCCCcccCeeE
Q 002308 594 LRYLNLSDQKIKKLPETLCELYNLEKLDISGCSDLRELPKG-IGKLINMKHLLNSGTRSLRYMPVGIGRLTGLRTLGEFH 672 (938)
Q Consensus 594 L~~L~L~~~~i~~lp~~i~~l~~L~~L~l~~~~~l~~lp~~-i~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~ 672 (938)
|..|+||.|.+.+.|..+...+++-+|+||+|. ++.+|.. +.+|+.|-+|+|++| .+..+|+.+..+.+|++|.+++
T Consensus 105 Lt~lDLShNqL~EvP~~LE~AKn~iVLNLS~N~-IetIPn~lfinLtDLLfLDLS~N-rLe~LPPQ~RRL~~LqtL~Ls~ 182 (1255)
T KOG0444|consen 105 LTILDLSHNQLREVPTNLEYAKNSIVLNLSYNN-IETIPNSLFINLTDLLFLDLSNN-RLEMLPPQIRRLSMLQTLKLSN 182 (1255)
T ss_pred ceeeecchhhhhhcchhhhhhcCcEEEEcccCc-cccCCchHHHhhHhHhhhccccc-hhhhcCHHHHHHhhhhhhhcCC
Confidence 888888888888888888888888888888877 7777765 447777888888877 5667788888888888888888
Q ss_pred ecCCCCCCCCcccccccccccccCcceeecCc----CCCCChhhhhhhhccCCCcCCceEEEEecCCCCCCCCCccchHH
Q 002308 673 VSAGGGVDGSKACRLESLKNLEHLQVCCIRRL----GDVSDVGEAKLLELDKKKYLSRLRLEFDKKGGGGGRRKNEDDQL 748 (938)
Q Consensus 673 ~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~----~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~ 748 (938)
|.+.. +.+..|++++.|...+.+.+ .++|. .+..+.+|..++++.|.+.-
T Consensus 183 NPL~h-------fQLrQLPsmtsL~vLhms~TqRTl~N~Pt-------sld~l~NL~dvDlS~N~Lp~------------ 236 (1255)
T KOG0444|consen 183 NPLNH-------FQLRQLPSMTSLSVLHMSNTQRTLDNIPT-------SLDDLHNLRDVDLSENNLPI------------ 236 (1255)
T ss_pred ChhhH-------HHHhcCccchhhhhhhcccccchhhcCCC-------chhhhhhhhhccccccCCCc------------
Confidence 77653 23555665555554333322 23333 55667788888888887654
Q ss_pred HHhhCCCCCCCCeEEEeeecCCCCCCCchhccCCCCEEEEecCCCCCcCCC-CCCCCccceeecccccC-ceEeCccccc
Q 002308 749 LLEALQPPLNLKELEIHYYGGNTVFPSWMASLTNLKSLDLCFCENCEQLPP-LGKLPSLEQLFISYMSS-VKRVGDEFLG 826 (938)
Q Consensus 749 ~~~~l~~~~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~l~~-l~~l~~L~~L~L~~~~~-l~~~~~~~~~ 826 (938)
+|+.+-.+++|+.|+|++|.++. +........+|+.|+||.|++. .+|. +..++.|+.|.+.+|.. .+.+|+.+
T Consensus 237 vPecly~l~~LrrLNLS~N~ite-L~~~~~~W~~lEtLNlSrNQLt-~LP~avcKL~kL~kLy~n~NkL~FeGiPSGI-- 312 (1255)
T KOG0444|consen 237 VPECLYKLRNLRRLNLSGNKITE-LNMTEGEWENLETLNLSRNQLT-VLPDAVCKLTKLTKLYANNNKLTFEGIPSGI-- 312 (1255)
T ss_pred chHHHhhhhhhheeccCcCceee-eeccHHHHhhhhhhccccchhc-cchHHHhhhHHHHHHHhccCcccccCCccch--
Confidence 67777788888888888888877 6666667778888888888654 4454 88888888888877762 12233322
Q ss_pred CCCCCCCCCCCCcccccCCccceeeccccccccccccccccccccccccccccceecccccccccCCCCCCCCCCCcCEE
Q 002308 827 VESDRHDSSSSSSVIIAFPKLKSLSIFEMEELEEWDYGITRTGNTFINIMPRLSSLTINYCSKLKALPDHIHQTTTLKEL 906 (938)
Q Consensus 827 ~~~l~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L 906 (938)
+.+-+|+.+...++ +|+-.+.+ ++.++.|+.|.|+. +.+-++|.++.-++.|+.|
T Consensus 313 ---------------GKL~~Levf~aanN-~LElVPEg--------lcRC~kL~kL~L~~-NrLiTLPeaIHlL~~l~vL 367 (1255)
T KOG0444|consen 313 ---------------GKLIQLEVFHAANN-KLELVPEG--------LCRCVKLQKLKLDH-NRLITLPEAIHLLPDLKVL 367 (1255)
T ss_pred ---------------hhhhhhHHHHhhcc-ccccCchh--------hhhhHHHHHhcccc-cceeechhhhhhcCCccee
Confidence 23455666665543 34444433 45899999999996 5788899999999999999
Q ss_pred EEecCcchHH
Q 002308 907 RIGECDLLEE 916 (938)
Q Consensus 907 ~l~~c~~l~~ 916 (938)
+++.||.+.-
T Consensus 368 DlreNpnLVM 377 (1255)
T KOG0444|consen 368 DLRENPNLVM 377 (1255)
T ss_pred eccCCcCccC
Confidence 9999998643
No 9
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.91 E-value=1.7e-25 Score=233.81 Aligned_cols=380 Identities=20% Similarity=0.191 Sum_probs=290.2
Q ss_pred EEeeCCcccccCCCCcccccceEEEEccCCCcCc-cccc--ccCceeEEeccCCCCCCCCchhhHHHHHhccCCCeeEEe
Q 002308 498 SLEVNGSEELNVPNSLDEKVRHLMLIMGKESTFP-ISTC--RAKRIRSLLIEWPEFGHSSLNGEILEELFRESTSLRALD 574 (938)
Q Consensus 498 ~~~~~~~~~~~~~~~~~~~~r~l~l~~~~~~~~~-~~~~--~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~ 574 (938)
+.+.......+.|...+...+-++.+.+.+.... ..+. -.+..++|++++|.+.+ +-..+|.++++|+.++
T Consensus 35 vvd~ga~~~~~cpa~c~c~~~lldcs~~~lea~~~~~l~g~lp~~t~~LdlsnNkl~~------id~~~f~nl~nLq~v~ 108 (873)
T KOG4194|consen 35 VVDAGAGDLSECPATCPCNTRLLDCSDRELEAIDKSRLKGFLPSQTQTLDLSNNKLSH------IDFEFFYNLPNLQEVN 108 (873)
T ss_pred ccccCCCccccCCCcCCCCceeeecCccccccccccccCCcCccceeeeecccccccc------CcHHHHhcCCcceeee
Confidence 3444444455666677788888888888776521 1111 23567889999998743 3345589999999999
Q ss_pred cCCCCCCcccCccccccCCCCeeeecCCcccccc-ccccCCCCccEEEcCCCCCcccccc-cccccCccceeecCCCccc
Q 002308 575 FPSFYLPLEIPRNIEKLVHLRYLNLSDQKIKKLP-ETLCELYNLEKLDISGCSDLRELPK-GIGKLINMKHLLNSGTRSL 652 (938)
Q Consensus 575 L~~n~~~~~lp~~~~~l~~L~~L~L~~~~i~~lp-~~i~~l~~L~~L~l~~~~~l~~lp~-~i~~l~~L~~L~l~~~~~~ 652 (938)
+.+|. ...+|...+...||+.|+|.+|.|.++. +++.-++.|++||||.|. +..+|. .|..-.++++|+|++|.+.
T Consensus 109 l~~N~-Lt~IP~f~~~sghl~~L~L~~N~I~sv~se~L~~l~alrslDLSrN~-is~i~~~sfp~~~ni~~L~La~N~It 186 (873)
T KOG4194|consen 109 LNKNE-LTRIPRFGHESGHLEKLDLRHNLISSVTSEELSALPALRSLDLSRNL-ISEIPKPSFPAKVNIKKLNLASNRIT 186 (873)
T ss_pred eccch-hhhcccccccccceeEEeeeccccccccHHHHHhHhhhhhhhhhhch-hhcccCCCCCCCCCceEEeecccccc
Confidence 99999 7788987777789999999999999765 468889999999999998 555554 4555578999999999776
Q ss_pred ccCCccCCCCCCCcccCeeEecCCCCCCCCcccccccccccccCcceeecCcCCCCChhhhhhhhccCCCcCCceEEEEe
Q 002308 653 RYMPVGIGRLTGLRTLGEFHVSAGGGVDGSKACRLESLKNLEHLQVCCIRRLGDVSDVGEAKLLELDKKKYLSRLRLEFD 732 (938)
Q Consensus 653 ~~~p~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~ 732 (938)
..-...|..+.+|-+|.++.|.+.... ...|+.|++|+.|++..|.+-..- ...+.++++|+.|.|..|
T Consensus 187 ~l~~~~F~~lnsL~tlkLsrNrittLp----~r~Fk~L~~L~~LdLnrN~irive-------~ltFqgL~Sl~nlklqrN 255 (873)
T KOG4194|consen 187 TLETGHFDSLNSLLTLKLSRNRITTLP----QRSFKRLPKLESLDLNRNRIRIVE-------GLTFQGLPSLQNLKLQRN 255 (873)
T ss_pred ccccccccccchheeeecccCcccccC----HHHhhhcchhhhhhccccceeeeh-------hhhhcCchhhhhhhhhhc
Confidence 655566889999999999999887632 335888999999999887654321 226889999999999999
Q ss_pred cCCCCCCCCCccchHHHHhhCCCCCCCCeEEEeeecCCCCCCCchhccCCCCEEEEecCCCCCcCCC-CCCCCccceeec
Q 002308 733 KKGGGGGRRKNEDDQLLLEALQPPLNLKELEIHYYGGNTVFPSWMASLTNLKSLDLCFCENCEQLPP-LGKLPSLEQLFI 811 (938)
Q Consensus 733 ~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~l~~-l~~l~~L~~L~L 811 (938)
.+... --..|-.+.++++|+|..|.+...-..|+..++.|+.|+||+|.+...-+. ...+++|+.|+|
T Consensus 256 ~I~kL-----------~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdL 324 (873)
T KOG4194|consen 256 DISKL-----------DDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDL 324 (873)
T ss_pred Ccccc-----------cCcceeeecccceeecccchhhhhhcccccccchhhhhccchhhhheeecchhhhcccceeEec
Confidence 87641 123566788999999999999885567899999999999999987765554 888999999999
Q ss_pred ccccCceEeCcc-cccCCCCCCCCCCCCccc-------ccCCccceeeccccccccccccccccccccccccccccceec
Q 002308 812 SYMSSVKRVGDE-FLGVESDRHDSSSSSSVI-------IAFPKLKSLSIFEMEELEEWDYGITRTGNTFINIMPRLSSLT 883 (938)
Q Consensus 812 ~~~~~l~~~~~~-~~~~~~l~~~~~~~~~~~-------~~~~~L~~L~l~~~~~L~~~~~~~~~~~~~~~~~l~~L~~L~ 883 (938)
++|. +..++++ +.....+..++++.|.+. .++.+|+.|+|..+. | ....++ ....+..||+|++|.
T Consensus 325 s~N~-i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~-l---s~~IED-aa~~f~gl~~LrkL~ 398 (873)
T KOG4194|consen 325 SSNR-ITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNE-L---SWCIED-AAVAFNGLPSLRKLR 398 (873)
T ss_pred cccc-cccCChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCe-E---EEEEec-chhhhccchhhhhee
Confidence 9998 6666554 556677788888888752 345677777776643 1 111222 233455699999999
Q ss_pred ccccccccCCCC-CCCCCCCcCEEEEecCcch
Q 002308 884 INYCSKLKALPD-HIHQTTTLKELRIGECDLL 914 (938)
Q Consensus 884 l~~c~~l~~lp~-~l~~l~~L~~L~l~~c~~l 914 (938)
+.+| +++.+|. .+..+.+|++|++.+|+..
T Consensus 399 l~gN-qlk~I~krAfsgl~~LE~LdL~~Naia 429 (873)
T KOG4194|consen 399 LTGN-QLKSIPKRAFSGLEALEHLDLGDNAIA 429 (873)
T ss_pred ecCc-eeeecchhhhccCcccceecCCCCcce
Confidence 9995 6899985 5788999999999999964
No 10
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.91 E-value=3.6e-27 Score=235.63 Aligned_cols=351 Identities=22% Similarity=0.244 Sum_probs=243.6
Q ss_pred ccceEEEEccCCCcCcccccccCceeEEeccCCCCCCCCchhhHHHHHhccCCCeeEEecCCCCCCcccCccccccCCCC
Q 002308 516 KVRHLMLIMGKESTFPISTCRAKRIRSLLIEWPEFGHSSLNGEILEELFRESTSLRALDFPSFYLPLEIPRNIEKLVHLR 595 (938)
Q Consensus 516 ~~r~l~l~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~n~~~~~lp~~~~~l~~L~ 595 (938)
.+..+.+++|.....|.++.++..+..++++.|.+ ..+|+. ......|+.|++++|. ...+|+.++.+..|.
T Consensus 69 ~l~vl~~~~n~l~~lp~aig~l~~l~~l~vs~n~l------s~lp~~-i~s~~~l~~l~~s~n~-~~el~~~i~~~~~l~ 140 (565)
T KOG0472|consen 69 CLTVLNVHDNKLSQLPAAIGELEALKSLNVSHNKL------SELPEQ-IGSLISLVKLDCSSNE-LKELPDSIGRLLDLE 140 (565)
T ss_pred ceeEEEeccchhhhCCHHHHHHHHHHHhhcccchH------hhccHH-Hhhhhhhhhhhccccc-eeecCchHHHHhhhh
Confidence 34556677777777788888888888887777763 333343 5667778888888887 666777888888888
Q ss_pred eeeecCCccccccccccCCCCccEEEcCCCCCcccccccccccCccceeecCCCcccccCCccCCCCCCCcccCeeEecC
Q 002308 596 YLNLSDQKIKKLPETLCELYNLEKLDISGCSDLRELPKGIGKLINMKHLLNSGTRSLRYMPVGIGRLTGLRTLGEFHVSA 675 (938)
Q Consensus 596 ~L~L~~~~i~~lp~~i~~l~~L~~L~l~~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~~ 675 (938)
.|+..+|++..+|+.++++.+|..|++.+|+ +..+|+....++.|+||+...| .+..+|+.++.+.+|..|++..|.+
T Consensus 141 dl~~~~N~i~slp~~~~~~~~l~~l~~~~n~-l~~l~~~~i~m~~L~~ld~~~N-~L~tlP~~lg~l~~L~~LyL~~Nki 218 (565)
T KOG0472|consen 141 DLDATNNQISSLPEDMVNLSKLSKLDLEGNK-LKALPENHIAMKRLKHLDCNSN-LLETLPPELGGLESLELLYLRRNKI 218 (565)
T ss_pred hhhccccccccCchHHHHHHHHHHhhccccc-hhhCCHHHHHHHHHHhcccchh-hhhcCChhhcchhhhHHHHhhhccc
Confidence 8888888888888888888888888888877 6666666666888888887776 6677888888888888888887776
Q ss_pred CCCCCCCcccccccccccccCcceeecCcCCCCChhhhhhhhccCCCcCCceEEEEecCCCCCCCCCccchHHHHhhCCC
Q 002308 676 GGGVDGSKACRLESLKNLEHLQVCCIRRLGDVSDVGEAKLLELDKKKYLSRLRLEFDKKGGGGGRRKNEDDQLLLEALQP 755 (938)
Q Consensus 676 ~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~ 755 (938)
.. ...|..|..|..|....|.+..... .....++++..|+|..|.+.+ +|..+..
T Consensus 219 ~~------lPef~gcs~L~Elh~g~N~i~~lpa-------e~~~~L~~l~vLDLRdNklke------------~Pde~cl 273 (565)
T KOG0472|consen 219 RF------LPEFPGCSLLKELHVGENQIEMLPA-------EHLKHLNSLLVLDLRDNKLKE------------VPDEICL 273 (565)
T ss_pred cc------CCCCCccHHHHHHHhcccHHHhhHH-------HHhcccccceeeecccccccc------------CchHHHH
Confidence 64 2246667777777766655422211 134466777777777777655 4555555
Q ss_pred CCCCCeEEEeeecCCCCCCCchhccCCCCEEEEecCCC------------------------------------------
Q 002308 756 PLNLKELEIHYYGGNTVFPSWMASLTNLKSLDLCFCEN------------------------------------------ 793 (938)
Q Consensus 756 ~~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~L~~~~~------------------------------------------ 793 (938)
+.+|+.|++++|.+++ +|..++++ .|+.|-+.+|++
T Consensus 274 LrsL~rLDlSNN~is~-Lp~sLgnl-hL~~L~leGNPlrTiRr~ii~~gT~~vLKyLrs~~~~dglS~se~~~e~~~t~~ 351 (565)
T KOG0472|consen 274 LRSLERLDLSNNDISS-LPYSLGNL-HLKFLALEGNPLRTIRREIISKGTQEVLKYLRSKIKDDGLSQSEGGTETAMTLP 351 (565)
T ss_pred hhhhhhhcccCCcccc-CCcccccc-eeeehhhcCCchHHHHHHHHcccHHHHHHHHHHhhccCCCCCCcccccccCCCC
Confidence 6677777777777777 67767776 677777777654
Q ss_pred -------------------------------------------------C-----------------------CcCCC-C
Q 002308 794 -------------------------------------------------C-----------------------EQLPP-L 800 (938)
Q Consensus 794 -------------------------------------------------~-----------------------~~l~~-l 800 (938)
+ +..|. +
T Consensus 352 ~~~~~~~~~~i~tkiL~~s~~qlt~VPdEVfea~~~~~Vt~VnfskNqL~elPk~L~~lkelvT~l~lsnn~isfv~~~l 431 (565)
T KOG0472|consen 352 SESFPDIYAIITTKILDVSDKQLTLVPDEVFEAAKSEIVTSVNFSKNQLCELPKRLVELKELVTDLVLSNNKISFVPLEL 431 (565)
T ss_pred CCcccchhhhhhhhhhcccccccccCCHHHHHHhhhcceEEEecccchHhhhhhhhHHHHHHHHHHHhhcCccccchHHH
Confidence 0 11111 3
Q ss_pred CCCCccceeecccccCceEeCcccccCCCCCCCCCCCCcccccCCc----ccee--eccccccccccccccccccccccc
Q 002308 801 GKLPSLEQLFISYMSSVKRVGDEFLGVESDRHDSSSSSSVIIAFPK----LKSL--SIFEMEELEEWDYGITRTGNTFIN 874 (938)
Q Consensus 801 ~~l~~L~~L~L~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~----L~~L--~l~~~~~L~~~~~~~~~~~~~~~~ 874 (938)
..+++|..|+|++|. +..+|.+++....++.++++.|.+. ..|+ ++.+ .+.....+..++. +-+.
T Consensus 432 ~~l~kLt~L~L~NN~-Ln~LP~e~~~lv~Lq~LnlS~NrFr-~lP~~~y~lq~lEtllas~nqi~~vd~-------~~l~ 502 (565)
T KOG0472|consen 432 SQLQKLTFLDLSNNL-LNDLPEEMGSLVRLQTLNLSFNRFR-MLPECLYELQTLETLLASNNQIGSVDP-------SGLK 502 (565)
T ss_pred Hhhhcceeeecccch-hhhcchhhhhhhhhheecccccccc-cchHHHhhHHHHHHHHhccccccccCh-------HHhh
Confidence 457788888888877 7788888887777788887777331 2221 1111 1111122222222 2245
Q ss_pred cccccceecccccccccCCCCCCCCCCCcCEEEEecCcc
Q 002308 875 IMPRLSSLTINYCSKLKALPDHIHQTTTLKELRIGECDL 913 (938)
Q Consensus 875 ~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~~ 913 (938)
.|.+|..|++.+ +.+..+|+.++++++|++|++.|||.
T Consensus 503 nm~nL~tLDL~n-Ndlq~IPp~LgnmtnL~hLeL~gNpf 540 (565)
T KOG0472|consen 503 NMRNLTTLDLQN-NDLQQIPPILGNMTNLRHLELDGNPF 540 (565)
T ss_pred hhhhcceeccCC-CchhhCChhhccccceeEEEecCCcc
Confidence 899999999998 56889999999999999999999996
No 11
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.86 E-value=3.5e-21 Score=239.95 Aligned_cols=321 Identities=24% Similarity=0.282 Sum_probs=209.4
Q ss_pred cccceEEEEccCCCcCcccccccCceeEEeccCCCCCCCCchhhHHHHHhccCCCeeEEecCCCCCCcccCccccccCCC
Q 002308 515 EKVRHLMLIMGKESTFPISTCRAKRIRSLLIEWPEFGHSSLNGEILEELFRESTSLRALDFPSFYLPLEIPRNIEKLVHL 594 (938)
Q Consensus 515 ~~~r~l~l~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~n~~~~~lp~~~~~l~~L 594 (938)
.++|.+.+..+.+..+|..+ ...+|+.|.+.++.+ ..++ ..+..+++|+.|+|+++.....+|. ++.+++|
T Consensus 589 ~~Lr~L~~~~~~l~~lP~~f-~~~~L~~L~L~~s~l------~~L~-~~~~~l~~Lk~L~Ls~~~~l~~ip~-ls~l~~L 659 (1153)
T PLN03210 589 PKLRLLRWDKYPLRCMPSNF-RPENLVKLQMQGSKL------EKLW-DGVHSLTGLRNIDLRGSKNLKEIPD-LSMATNL 659 (1153)
T ss_pred cccEEEEecCCCCCCCCCcC-CccCCcEEECcCccc------cccc-cccccCCCCCEEECCCCCCcCcCCc-cccCCcc
Confidence 45666666666666565554 456677776666653 1111 2245667777777776654555553 6667777
Q ss_pred CeeeecCCc-cccccccccCCCCccEEEcCCCCCcccccccccccCccceeecCCCcccccCCccCCCCCCCcccCeeEe
Q 002308 595 RYLNLSDQK-IKKLPETLCELYNLEKLDISGCSDLRELPKGIGKLINMKHLLNSGTRSLRYMPVGIGRLTGLRTLGEFHV 673 (938)
Q Consensus 595 ~~L~L~~~~-i~~lp~~i~~l~~L~~L~l~~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~ 673 (938)
++|+|++|. +..+|..++++++|+.|++++|..+..+|..+ ++++|++|++++|..+..+|.. .++|+.|++.+|
T Consensus 660 e~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-~l~sL~~L~Lsgc~~L~~~p~~---~~nL~~L~L~~n 735 (1153)
T PLN03210 660 ETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI-NLKSLYRLNLSGCSRLKSFPDI---STNISWLDLDET 735 (1153)
T ss_pred cEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcC-CCCCCCEEeCCCCCCccccccc---cCCcCeeecCCC
Confidence 777777654 55677777777777777777776677777655 5677777777777655555532 345666666666
Q ss_pred cCCCCCCCCcccccccccccccCcceeecCcCCCCChhhhhhhhccCCCcCCceEEEEecCCCCCCCCCccchHHHHhhC
Q 002308 674 SAGGGVDGSKACRLESLKNLEHLQVCCIRRLGDVSDVGEAKLLELDKKKYLSRLRLEFDKKGGGGGRRKNEDDQLLLEAL 753 (938)
Q Consensus 674 ~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l 753 (938)
.+.. ++ ..+ .+++|+.|.+.++....................++|+.|+|++|.... .++..+
T Consensus 736 ~i~~-lP----~~~-~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~-----------~lP~si 798 (1153)
T PLN03210 736 AIEE-FP----SNL-RLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLV-----------ELPSSI 798 (1153)
T ss_pred cccc-cc----ccc-cccccccccccccchhhccccccccchhhhhccccchheeCCCCCCcc-----------ccChhh
Confidence 5443 11 111 355666666654332111100000000112234689999998875432 256678
Q ss_pred CCCCCCCeEEEeeecCCCCCCCchhccCCCCEEEEecCCCCCcCCCCCCCCccceeecccccCceEeCcccccCCCCCCC
Q 002308 754 QPPLNLKELEIHYYGGNTVFPSWMASLTNLKSLDLCFCENCEQLPPLGKLPSLEQLFISYMSSVKRVGDEFLGVESDRHD 833 (938)
Q Consensus 754 ~~~~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~l~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~l~~~ 833 (938)
..+++|+.|++++|.....+|..+ .+++|+.|+|++|.....+|.+ .++|+.|+|++|. ++.+|..+
T Consensus 799 ~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~~~p~~--~~nL~~L~Ls~n~-i~~iP~si--------- 865 (1153)
T PLN03210 799 QNLHKLEHLEIENCINLETLPTGI-NLESLESLDLSGCSRLRTFPDI--STNISDLNLSRTG-IEEVPWWI--------- 865 (1153)
T ss_pred hCCCCCCEEECCCCCCcCeeCCCC-CccccCEEECCCCCcccccccc--ccccCEeECCCCC-CccChHHH---------
Confidence 889999999999986555588766 7899999999999877766653 4689999999986 66666543
Q ss_pred CCCCCcccccCCccceeeccccccccccccccccccccccccccccceecccccccccCCC
Q 002308 834 SSSSSSVIIAFPKLKSLSIFEMEELEEWDYGITRTGNTFINIMPRLSSLTINYCSKLKALP 894 (938)
Q Consensus 834 ~~~~~~~~~~~~~L~~L~l~~~~~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~lp 894 (938)
..+++|+.|++.+|++|+.++... ..+++|+.|++++|..++.++
T Consensus 866 --------~~l~~L~~L~L~~C~~L~~l~~~~--------~~L~~L~~L~l~~C~~L~~~~ 910 (1153)
T PLN03210 866 --------EKFSNLSFLDMNGCNNLQRVSLNI--------SKLKHLETVDFSDCGALTEAS 910 (1153)
T ss_pred --------hcCCCCCEEECCCCCCcCccCccc--------ccccCCCeeecCCCccccccc
Confidence 368889999999999888776532 367889999999998887543
No 12
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.84 E-value=5.1e-24 Score=213.26 Aligned_cols=359 Identities=19% Similarity=0.203 Sum_probs=272.9
Q ss_pred cccceEEEEccCCCcCcccccccCceeEEeccCCCCCCCCchhhHHHHHhccCCCeeEEecCCCCCCcccCccccccCCC
Q 002308 515 EKVRHLMLIMGKESTFPISTCRAKRIRSLLIEWPEFGHSSLNGEILEELFRESTSLRALDFPSFYLPLEIPRNIEKLVHL 594 (938)
Q Consensus 515 ~~~r~l~l~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~n~~~~~lp~~~~~l~~L 594 (938)
..+..+.+++|.+......+.++..+.+|.+..|.+ ...|+. ...+..++.|+.++|. ...+|..++.+..|
T Consensus 45 v~l~~lils~N~l~~l~~dl~nL~~l~vl~~~~n~l------~~lp~a-ig~l~~l~~l~vs~n~-ls~lp~~i~s~~~l 116 (565)
T KOG0472|consen 45 VDLQKLILSHNDLEVLREDLKNLACLTVLNVHDNKL------SQLPAA-IGELEALKSLNVSHNK-LSELPEQIGSLISL 116 (565)
T ss_pred cchhhhhhccCchhhccHhhhcccceeEEEeccchh------hhCCHH-HHHHHHHHHhhcccch-HhhccHHHhhhhhh
Confidence 346778888898888888888999999999998875 233443 6778889999999999 77899999999999
Q ss_pred CeeeecCCccccccccccCCCCccEEEcCCCCCcccccccccccCccceeecCCCcccccCCccCCCCCCCcccCeeEec
Q 002308 595 RYLNLSDQKIKKLPETLCELYNLEKLDISGCSDLRELPKGIGKLINMKHLLNSGTRSLRYMPVGIGRLTGLRTLGEFHVS 674 (938)
Q Consensus 595 ~~L~L~~~~i~~lp~~i~~l~~L~~L~l~~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~ 674 (938)
+.|+.++|.+.++|++|+.+..|+.|+..+|. +..+|.++..+.+|..|++.+|.. ..+|+..-.++.|+.|+..+|-
T Consensus 117 ~~l~~s~n~~~el~~~i~~~~~l~dl~~~~N~-i~slp~~~~~~~~l~~l~~~~n~l-~~l~~~~i~m~~L~~ld~~~N~ 194 (565)
T KOG0472|consen 117 VKLDCSSNELKELPDSIGRLLDLEDLDATNNQ-ISSLPEDMVNLSKLSKLDLEGNKL-KALPENHIAMKRLKHLDCNSNL 194 (565)
T ss_pred hhhhccccceeecCchHHHHhhhhhhhccccc-cccCchHHHHHHHHHHhhccccch-hhCCHHHHHHHHHHhcccchhh
Confidence 99999999999999999999999999999998 888999999999999999999954 4556555559999999998887
Q ss_pred CCCCCCCCcccccccccccccCcceeecCcCCCCChhhhhhhhccCCCcCCceEEEEecCCCCCCCCCccchHHHHhhCC
Q 002308 675 AGGGVDGSKACRLESLKNLEHLQVCCIRRLGDVSDVGEAKLLELDKKKYLSRLRLEFDKKGGGGGRRKNEDDQLLLEALQ 754 (938)
Q Consensus 675 ~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~ 754 (938)
+.. ++..++.+.+|..|++..|.+...+ .+.+|..|..++++.|.+.. .-.+...
T Consensus 195 L~t-----lP~~lg~l~~L~~LyL~~Nki~~lP---------ef~gcs~L~Elh~g~N~i~~-----------lpae~~~ 249 (565)
T KOG0472|consen 195 LET-----LPPELGGLESLELLYLRRNKIRFLP---------EFPGCSLLKELHVGENQIEM-----------LPAEHLK 249 (565)
T ss_pred hhc-----CChhhcchhhhHHHHhhhcccccCC---------CCCccHHHHHHHhcccHHHh-----------hHHHHhc
Confidence 765 3445788889999998888765433 47788899999999987753 1234556
Q ss_pred CCCCCCeEEEeeecCCCCCCCchhccCCCCEEEEecCCCCCcCCCCCCCCccceeecccccCceEeCcccccCCC---CC
Q 002308 755 PPLNLKELEIHYYGGNTVFPSWMASLTNLKSLDLCFCENCEQLPPLGKLPSLEQLFISYMSSVKRVGDEFLGVES---DR 831 (938)
Q Consensus 755 ~~~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~l~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~---l~ 831 (938)
.+++|..|++..|.+.. +|..++-+++|.+||+|+|.+....+.+|++ .|+.|.+.||+ ++.+-.++...++ +.
T Consensus 250 ~L~~l~vLDLRdNklke-~Pde~clLrsL~rLDlSNN~is~Lp~sLgnl-hL~~L~leGNP-lrTiRr~ii~~gT~~vLK 326 (565)
T KOG0472|consen 250 HLNSLLVLDLRDNKLKE-VPDEICLLRSLERLDLSNNDISSLPYSLGNL-HLKFLALEGNP-LRTIRREIISKGTQEVLK 326 (565)
T ss_pred ccccceeeecccccccc-CchHHHHhhhhhhhcccCCccccCCcccccc-eeeehhhcCCc-hHHHHHHHHcccHHHHHH
Confidence 88999999999999999 9999999999999999999877666669999 99999999998 6554333222111 00
Q ss_pred C---------CCCC--CCc-----ccccCC------ccceeecccc-------------------------cccccccc-
Q 002308 832 H---------DSSS--SSS-----VIIAFP------KLKSLSIFEM-------------------------EELEEWDY- 863 (938)
Q Consensus 832 ~---------~~~~--~~~-----~~~~~~------~L~~L~l~~~-------------------------~~L~~~~~- 863 (938)
+ ++.+ ... ....|| +.+.|.+++. ..|.+++.
T Consensus 327 yLrs~~~~dglS~se~~~e~~~t~~~~~~~~~~~~i~tkiL~~s~~qlt~VPdEVfea~~~~~Vt~VnfskNqL~elPk~ 406 (565)
T KOG0472|consen 327 YLRSKIKDDGLSQSEGGTETAMTLPSESFPDIYAIITTKILDVSDKQLTLVPDEVFEAAKSEIVTSVNFSKNQLCELPKR 406 (565)
T ss_pred HHHHhhccCCCCCCcccccccCCCCCCcccchhhhhhhhhhcccccccccCCHHHHHHhhhcceEEEecccchHhhhhhh
Confidence 0 0000 000 011232 2333433221 11222221
Q ss_pred ---------------ccccccccccccccccceecccccccccCCCCCCCCCCCcCEEEEecCc
Q 002308 864 ---------------GITRTGNTFINIMPRLSSLTINYCSKLKALPDHIHQTTTLKELRIGECD 912 (938)
Q Consensus 864 ---------------~~~~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~ 912 (938)
......+.+++.+++|..|++++ +.+..+|..++.+..|+.|+++.|.
T Consensus 407 L~~lkelvT~l~lsnn~isfv~~~l~~l~kLt~L~L~N-N~Ln~LP~e~~~lv~Lq~LnlS~Nr 469 (565)
T KOG0472|consen 407 LVELKELVTDLVLSNNKISFVPLELSQLQKLTFLDLSN-NLLNDLPEEMGSLVRLQTLNLSFNR 469 (565)
T ss_pred hHHHHHHHHHHHhhcCccccchHHHHhhhcceeeeccc-chhhhcchhhhhhhhhheecccccc
Confidence 11112456667899999999998 5689999999999999999999985
No 13
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.83 E-value=4.3e-23 Score=227.89 Aligned_cols=275 Identities=22% Similarity=0.168 Sum_probs=187.7
Q ss_pred ccceEEEEccCCCcCcccccccCceeEEeccCCCCCCCCchhhHHHHHhccCCCeeEEecCCCCCCcccCccccccCCCC
Q 002308 516 KVRHLMLIMGKESTFPISTCRAKRIRSLLIEWPEFGHSSLNGEILEELFRESTSLRALDFPSFYLPLEIPRNIEKLVHLR 595 (938)
Q Consensus 516 ~~r~l~l~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~n~~~~~lp~~~~~l~~L~ 595 (938)
++.++++++|.+..+|..+..+++|+.|.++.|.+ ...+ ....++.+|++|.|.+|. ...+|.++..+++|+
T Consensus 46 ~L~~l~lsnn~~~~fp~~it~l~~L~~ln~s~n~i------~~vp-~s~~~~~~l~~lnL~~n~-l~~lP~~~~~lknl~ 117 (1081)
T KOG0618|consen 46 KLKSLDLSNNQISSFPIQITLLSHLRQLNLSRNYI------RSVP-SSCSNMRNLQYLNLKNNR-LQSLPASISELKNLQ 117 (1081)
T ss_pred eeEEeeccccccccCCchhhhHHHHhhcccchhhH------hhCc-hhhhhhhcchhheeccch-hhcCchhHHhhhccc
Confidence 38888999999988999999999999999988874 4433 336788999999999998 777899999999999
Q ss_pred eeeecCCccccccccccCCCCccEEEcCCCCCcccccccccccCccceeecCCCcccccCCccCCCCCCCcccCeeEecC
Q 002308 596 YLNLSDQKIKKLPETLCELYNLEKLDISGCSDLRELPKGIGKLINMKHLLNSGTRSLRYMPVGIGRLTGLRTLGEFHVSA 675 (938)
Q Consensus 596 ~L~L~~~~i~~lp~~i~~l~~L~~L~l~~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~~ 675 (938)
||++++|.+..+|..+..+..+..++.++|..+..++... ++++++..+.....++..++.++. +|++..|..
T Consensus 118 ~LdlS~N~f~~~Pl~i~~lt~~~~~~~s~N~~~~~lg~~~-----ik~~~l~~n~l~~~~~~~i~~l~~--~ldLr~N~~ 190 (1081)
T KOG0618|consen 118 YLDLSFNHFGPIPLVIEVLTAEEELAASNNEKIQRLGQTS-----IKKLDLRLNVLGGSFLIDIYNLTH--QLDLRYNEM 190 (1081)
T ss_pred ccccchhccCCCchhHHhhhHHHHHhhhcchhhhhhcccc-----chhhhhhhhhcccchhcchhhhhe--eeecccchh
Confidence 9999999999999999999999999999884444444321 677777777666667777776666 677777665
Q ss_pred CCCCCCCcccccccccccccCcceeecCcCCCCChh--h---------hhhhhccCCCcCCceEEEEecCCCCCCCCCcc
Q 002308 676 GGGVDGSKACRLESLKNLEHLQVCCIRRLGDVSDVG--E---------AKLLELDKKKYLSRLRLEFDKKGGGGGRRKNE 744 (938)
Q Consensus 676 ~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~--~---------~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~ 744 (938)
.. . .+.++++|+.|....|.......... . ..........+|+.++++.|.+..
T Consensus 191 ~~-~------dls~~~~l~~l~c~rn~ls~l~~~g~~l~~L~a~~n~l~~~~~~p~p~nl~~~dis~n~l~~-------- 255 (1081)
T KOG0618|consen 191 EV-L------DLSNLANLEVLHCERNQLSELEISGPSLTALYADHNPLTTLDVHPVPLNLQYLDISHNNLSN-------- 255 (1081)
T ss_pred hh-h------hhhhccchhhhhhhhcccceEEecCcchheeeeccCcceeeccccccccceeeecchhhhhc--------
Confidence 41 1 13344444444433332211000000 0 000001122456677777766654
Q ss_pred chHHHHhhCCCCCCCCeEEEeeecCCCCCCCchhccCCCCEEEEecCCCCCcCCCCCCCCccceeecccccCceEeCccc
Q 002308 745 DDQLLLEALQPPLNLKELEIHYYGGNTVFPSWMASLTNLKSLDLCFCENCEQLPPLGKLPSLEQLFISYMSSVKRVGDEF 824 (938)
Q Consensus 745 ~~~~~~~~l~~~~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~l~~l~~l~~L~~L~L~~~~~l~~~~~~~ 824 (938)
+++.+..+.+|+.+...+|.++. +|..+...++|+.|.+..|.+....|.+..+.+|+.|+|..|. +..+|+.+
T Consensus 256 ----lp~wi~~~~nle~l~~n~N~l~~-lp~ri~~~~~L~~l~~~~nel~yip~~le~~~sL~tLdL~~N~-L~~lp~~~ 329 (1081)
T KOG0618|consen 256 ----LPEWIGACANLEALNANHNRLVA-LPLRISRITSLVSLSAAYNELEYIPPFLEGLKSLRTLDLQSNN-LPSLPDNF 329 (1081)
T ss_pred ----chHHHHhcccceEecccchhHHh-hHHHHhhhhhHHHHHhhhhhhhhCCCcccccceeeeeeehhcc-ccccchHH
Confidence 55666667777777777777766 6666666777777777777655444557778999999998887 77777655
Q ss_pred cc
Q 002308 825 LG 826 (938)
Q Consensus 825 ~~ 826 (938)
+.
T Consensus 330 l~ 331 (1081)
T KOG0618|consen 330 LA 331 (1081)
T ss_pred Hh
Confidence 43
No 14
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.75 E-value=2.4e-20 Score=206.47 Aligned_cols=358 Identities=22% Similarity=0.308 Sum_probs=214.2
Q ss_pred hccCCCeeEEecCCCCCCcccCccccccCCCCeeeecCCccccccccccCCCCccEEEcCCCCCcccccccccccCccce
Q 002308 564 FRESTSLRALDFPSFYLPLEIPRNIEKLVHLRYLNLSDQKIKKLPETLCELYNLEKLDISGCSDLRELPKGIGKLINMKH 643 (938)
Q Consensus 564 ~~~~~~Lr~L~L~~n~~~~~lp~~~~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~l~~~~~l~~lp~~i~~l~~L~~ 643 (938)
..+.-+|++||+++|. ...+|..++.+.+|+.|+++.|.|...|.+++++.+|++|.|.+|. +..+|.++..+++|+.
T Consensus 41 ~~~~v~L~~l~lsnn~-~~~fp~~it~l~~L~~ln~s~n~i~~vp~s~~~~~~l~~lnL~~n~-l~~lP~~~~~lknl~~ 118 (1081)
T KOG0618|consen 41 VEKRVKLKSLDLSNNQ-ISSFPIQITLLSHLRQLNLSRNYIRSVPSSCSNMRNLQYLNLKNNR-LQSLPASISELKNLQY 118 (1081)
T ss_pred hhheeeeEEeeccccc-cccCCchhhhHHHHhhcccchhhHhhCchhhhhhhcchhheeccch-hhcCchhHHhhhcccc
Confidence 3334447777777776 6666777777777777777777777777777777777777777666 6667777777777777
Q ss_pred eecCCCcccccCCccCCCCCCCcccCeeEecCCCCCCCC-----------c-cccccccccccc-CcceeecCcCCCCCh
Q 002308 644 LLNSGTRSLRYMPVGIGRLTGLRTLGEFHVSAGGGVDGS-----------K-ACRLESLKNLEH-LQVCCIRRLGDVSDV 710 (938)
Q Consensus 644 L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~~~~~~~~~-----------~-~~~l~~l~~L~~-L~l~~~~~~~~~~~~ 710 (938)
|++++|. ...+|.-+..++.+..+..++|......... + .........|++ |++.+|...
T Consensus 119 LdlS~N~-f~~~Pl~i~~lt~~~~~~~s~N~~~~~lg~~~ik~~~l~~n~l~~~~~~~i~~l~~~ldLr~N~~~------ 191 (1081)
T KOG0618|consen 119 LDLSFNH-FGPIPLVIEVLTAEEELAASNNEKIQRLGQTSIKKLDLRLNVLGGSFLIDIYNLTHQLDLRYNEME------ 191 (1081)
T ss_pred cccchhc-cCCCchhHHhhhHHHHHhhhcchhhhhhccccchhhhhhhhhcccchhcchhhhheeeecccchhh------
Confidence 7777763 3345555555555555555555111100000 0 000111122222 444444432
Q ss_pred hhhhhhhccCCCcCCceEEEEecCCCCCCCC-------CccchHHHHhhCCCCCCCCeEEEeeecCCCCCCCchhccCCC
Q 002308 711 GEAKLLELDKKKYLSRLRLEFDKKGGGGGRR-------KNEDDQLLLEALQPPLNLKELEIHYYGGNTVFPSWMASLTNL 783 (938)
Q Consensus 711 ~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~-------~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~p~~~~~l~~L 783 (938)
...+..+.+|+.|....|.+....... .....-.....-..+.+|++++++.+.+.. +|+|++.+.+|
T Consensus 192 ----~~dls~~~~l~~l~c~rn~ls~l~~~g~~l~~L~a~~n~l~~~~~~p~p~nl~~~dis~n~l~~-lp~wi~~~~nl 266 (1081)
T KOG0618|consen 192 ----VLDLSNLANLEVLHCERNQLSELEISGPSLTALYADHNPLTTLDVHPVPLNLQYLDISHNNLSN-LPEWIGACANL 266 (1081)
T ss_pred ----hhhhhhccchhhhhhhhcccceEEecCcchheeeeccCcceeeccccccccceeeecchhhhhc-chHHHHhcccc
Confidence 123445555555555555443211000 000000011222345699999999999999 99999999999
Q ss_pred CEEEEecCCCCCcCCCCCCCCccceeecccccCceEeCcccccCCCCCCCCCCCCcccccCCc---------cceeeccc
Q 002308 784 KSLDLCFCENCEQLPPLGKLPSLEQLFISYMSSVKRVGDEFLGVESDRHDSSSSSSVIIAFPK---------LKSLSIFE 854 (938)
Q Consensus 784 ~~L~L~~~~~~~~l~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~---------L~~L~l~~ 854 (938)
+.|+..+|.+...+..+....+|+.|.+.+|. ++++|....+..++..+++-.|.+. .||. |..|+.+.
T Consensus 267 e~l~~n~N~l~~lp~ri~~~~~L~~l~~~~ne-l~yip~~le~~~sL~tLdL~~N~L~-~lp~~~l~v~~~~l~~ln~s~ 344 (1081)
T KOG0618|consen 267 EALNANHNRLVALPLRISRITSLVSLSAAYNE-LEYIPPFLEGLKSLRTLDLQSNNLP-SLPDNFLAVLNASLNTLNVSS 344 (1081)
T ss_pred eEecccchhHHhhHHHHhhhhhHHHHHhhhhh-hhhCCCcccccceeeeeeehhcccc-ccchHHHhhhhHHHHHHhhhh
Confidence 99999999874433347888999999999998 9999988777777777777666542 3332 11111111
Q ss_pred -------------cccccccc---cccccccccccccccccceecccccccccCCCCC-CCCCCCcCEEEEecCcc--hH
Q 002308 855 -------------MEELEEWD---YGITRTGNTFINIMPRLSSLTINYCSKLKALPDH-IHQTTTLKELRIGECDL--LE 915 (938)
Q Consensus 855 -------------~~~L~~~~---~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~-l~~l~~L~~L~l~~c~~--l~ 915 (938)
+..|+.+. +...+.+...+..+++|+.|+|++| .+..+|.. +.++..|++|+++||++ +.
T Consensus 345 n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyN-rL~~fpas~~~kle~LeeL~LSGNkL~~Lp 423 (1081)
T KOG0618|consen 345 NKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYN-RLNSFPASKLRKLEELEELNLSGNKLTTLP 423 (1081)
T ss_pred ccccccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeeccc-ccccCCHHHHhchHHhHHHhcccchhhhhh
Confidence 01111111 1222334455668889999999984 67888864 67788889999999885 22
Q ss_pred HH-----------hcCCCCCCCCcccCCCCcccC
Q 002308 916 ER-----------YRKGEGEDWPKTSHIPSIHIL 938 (938)
Q Consensus 916 ~~-----------~~~~~~~~~~~i~~i~~~~~~ 938 (938)
+. +....-...|.+++.|+|+++
T Consensus 424 ~tva~~~~L~tL~ahsN~l~~fPe~~~l~qL~~l 457 (1081)
T KOG0618|consen 424 DTVANLGRLHTLRAHSNQLLSFPELAQLPQLKVL 457 (1081)
T ss_pred HHHHhhhhhHHHhhcCCceeechhhhhcCcceEE
Confidence 21 112333456677777777664
No 15
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.68 E-value=1.2e-16 Score=183.97 Aligned_cols=258 Identities=20% Similarity=0.169 Sum_probs=178.8
Q ss_pred CCeeEEecCCCCCCcccCccccccCCCCeeeecCCccccccccccCCCCccEEEcCCCCCcccccccccccCccceeecC
Q 002308 568 TSLRALDFPSFYLPLEIPRNIEKLVHLRYLNLSDQKIKKLPETLCELYNLEKLDISGCSDLRELPKGIGKLINMKHLLNS 647 (938)
Q Consensus 568 ~~Lr~L~L~~n~~~~~lp~~~~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~l~~~~~l~~lp~~i~~l~~L~~L~l~ 647 (938)
..-.+|+|+++. ...+|..+. .+|+.|++++|.++.+|.. +++|++|++++|. +..+|.. .++|+.|+++
T Consensus 201 ~~~~~LdLs~~~-LtsLP~~l~--~~L~~L~L~~N~Lt~LP~l---p~~Lk~LdLs~N~-LtsLP~l---p~sL~~L~Ls 270 (788)
T PRK15387 201 NGNAVLNVGESG-LTTLPDCLP--AHITTLVIPDNNLTSLPAL---PPELRTLEVSGNQ-LTSLPVL---PPGLLELSIF 270 (788)
T ss_pred CCCcEEEcCCCC-CCcCCcchh--cCCCEEEccCCcCCCCCCC---CCCCcEEEecCCc-cCcccCc---ccccceeecc
Confidence 446778888888 446787665 4788888888888888853 5788889998887 6667753 4678888888
Q ss_pred CCcccccCCccCCCCCCCcccCeeEecCCCCCCCCcccccccccccccCcceeecCcCCCCChhhhhhhhccCCCcCCce
Q 002308 648 GTRSLRYMPVGIGRLTGLRTLGEFHVSAGGGVDGSKACRLESLKNLEHLQVCCIRRLGDVSDVGEAKLLELDKKKYLSRL 727 (938)
Q Consensus 648 ~~~~~~~~p~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~~~~L~~L 727 (938)
+|. +..+|..+ .+|+.|++.+|.+... + ..+++|+.|++++|.+.... . ...+|+.|
T Consensus 271 ~N~-L~~Lp~lp---~~L~~L~Ls~N~Lt~L-P-------~~p~~L~~LdLS~N~L~~Lp-~----------lp~~L~~L 327 (788)
T PRK15387 271 SNP-LTHLPALP---SGLCKLWIFGNQLTSL-P-------VLPPGLQELSVSDNQLASLP-A----------LPSELCKL 327 (788)
T ss_pred CCc-hhhhhhch---hhcCEEECcCCccccc-c-------ccccccceeECCCCccccCC-C----------Cccccccc
Confidence 884 34555422 4677788877776541 1 12367888888887665422 1 11357778
Q ss_pred EEEEecCCCCCCCCCccchHHHHhhCCCCCCCCeEEEeeecCCCCCCCchhccCCCCEEEEecCCCCCcCCCCCCCCccc
Q 002308 728 RLEFDKKGGGGGRRKNEDDQLLLEALQPPLNLKELEIHYYGGNTVFPSWMASLTNLKSLDLCFCENCEQLPPLGKLPSLE 807 (938)
Q Consensus 728 ~L~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~l~~l~~l~~L~ 807 (938)
++++|.+.. ++. .+.+|+.|+|++|.+.. +|.. .++|+.|++++|.+. .+|.+ .++|+
T Consensus 328 ~Ls~N~L~~------------LP~---lp~~Lq~LdLS~N~Ls~-LP~l---p~~L~~L~Ls~N~L~-~LP~l--~~~L~ 385 (788)
T PRK15387 328 WAYNNQLTS------------LPT---LPSGLQELSVSDNQLAS-LPTL---PSELYKLWAYNNRLT-SLPAL--PSGLK 385 (788)
T ss_pred ccccCcccc------------ccc---cccccceEecCCCccCC-CCCC---Ccccceehhhccccc-cCccc--ccccc
Confidence 888877654 221 23578899999988887 7764 357888888888665 35543 35788
Q ss_pred eeecccccCceEeCcccccCCCCCCCCCCCCcccccCCccceeeccccccccccccccccccccccccccccceeccccc
Q 002308 808 QLFISYMSSVKRVGDEFLGVESDRHDSSSSSSVIIAFPKLKSLSIFEMEELEEWDYGITRTGNTFINIMPRLSSLTINYC 887 (938)
Q Consensus 808 ~L~L~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~c 887 (938)
.|++++|. ++.+|. ..++|+.|+++++. +..++. .+.+|+.|++++|
T Consensus 386 ~LdLs~N~-Lt~LP~--------------------l~s~L~~LdLS~N~-LssIP~-----------l~~~L~~L~Ls~N 432 (788)
T PRK15387 386 ELIVSGNR-LTSLPV--------------------LPSELKELMVSGNR-LTSLPM-----------LPSGLLSLSVYRN 432 (788)
T ss_pred eEEecCCc-ccCCCC--------------------cccCCCEEEccCCc-CCCCCc-----------chhhhhhhhhccC
Confidence 89998886 544442 23568888887753 444432 2357888999985
Q ss_pred ccccCCCCCCCCCCCcCEEEEecCcch
Q 002308 888 SKLKALPDHIHQTTTLKELRIGECDLL 914 (938)
Q Consensus 888 ~~l~~lp~~l~~l~~L~~L~l~~c~~l 914 (938)
.++.+|..+.++++|+.|++++|+.-
T Consensus 433 -qLt~LP~sl~~L~~L~~LdLs~N~Ls 458 (788)
T PRK15387 433 -QLTRLPESLIHLSSETTVNLEGNPLS 458 (788)
T ss_pred -cccccChHHhhccCCCeEECCCCCCC
Confidence 57889988888999999999999864
No 16
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.57 E-value=1.5e-14 Score=166.93 Aligned_cols=242 Identities=19% Similarity=0.144 Sum_probs=171.2
Q ss_pred cCCCCcccccceEEEEccCCCcCcccccccCceeEEeccCCCCCCCCchhhHHHHHhccCCCeeEEecCCCCCCcccCcc
Q 002308 508 NVPNSLDEKVRHLMLIMGKESTFPISTCRAKRIRSLLIEWPEFGHSSLNGEILEELFRESTSLRALDFPSFYLPLEIPRN 587 (938)
Q Consensus 508 ~~~~~~~~~~r~l~l~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~n~~~~~lp~~ 587 (938)
.+|..++..++.|.+..|+++.+|.. .++|++|++++|.+. .++. ..++|+.|++++|. ...+|..
T Consensus 215 sLP~~l~~~L~~L~L~~N~Lt~LP~l---p~~Lk~LdLs~N~Lt------sLP~----lp~sL~~L~Ls~N~-L~~Lp~l 280 (788)
T PRK15387 215 TLPDCLPAHITTLVIPDNNLTSLPAL---PPELRTLEVSGNQLT------SLPV----LPPGLLELSIFSNP-LTHLPAL 280 (788)
T ss_pred cCCcchhcCCCEEEccCCcCCCCCCC---CCCCcEEEecCCccC------cccC----cccccceeeccCCc-hhhhhhc
Confidence 44555667889999999988877653 578999999888752 2221 24688899999998 5556653
Q ss_pred ccccCCCCeeeecCCccccccccccCCCCccEEEcCCCCCcccccccccccCccceeecCCCcccccCCccCCCCCCCcc
Q 002308 588 IEKLVHLRYLNLSDQKIKKLPETLCELYNLEKLDISGCSDLRELPKGIGKLINMKHLLNSGTRSLRYMPVGIGRLTGLRT 667 (938)
Q Consensus 588 ~~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~l~~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~ 667 (938)
+ ..|+.|++++|.++.+|.. +++|+.|++++|. +..+|... .+|+.|++++|.+ ..+|.. ..+|+.
T Consensus 281 p---~~L~~L~Ls~N~Lt~LP~~---p~~L~~LdLS~N~-L~~Lp~lp---~~L~~L~Ls~N~L-~~LP~l---p~~Lq~ 346 (788)
T PRK15387 281 P---SGLCKLWIFGNQLTSLPVL---PPGLQELSVSDNQ-LASLPALP---SELCKLWAYNNQL-TSLPTL---PSGLQE 346 (788)
T ss_pred h---hhcCEEECcCCcccccccc---ccccceeECCCCc-cccCCCCc---ccccccccccCcc-cccccc---ccccce
Confidence 3 5688899999999988863 4689999999987 66666532 4577888888844 456642 247889
Q ss_pred cCeeEecCCCCCCCCcccccccccccccCcceeecCcCCCCChhhhhhhhccCCCcCCceEEEEecCCCCCCCCCccchH
Q 002308 668 LGEFHVSAGGGVDGSKACRLESLKNLEHLQVCCIRRLGDVSDVGEAKLLELDKKKYLSRLRLEFDKKGGGGGRRKNEDDQ 747 (938)
Q Consensus 668 L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~ 747 (938)
|++++|.+... +. ...+|+.|++.+|.+.. ++. ...+|+.|++++|.+..
T Consensus 347 LdLS~N~Ls~L-P~-------lp~~L~~L~Ls~N~L~~-LP~----------l~~~L~~LdLs~N~Lt~----------- 396 (788)
T PRK15387 347 LSVSDNQLASL-PT-------LPSELYKLWAYNNRLTS-LPA----------LPSGLKELIVSGNRLTS----------- 396 (788)
T ss_pred EecCCCccCCC-CC-------CCcccceehhhcccccc-Ccc----------cccccceEEecCCcccC-----------
Confidence 99988887651 11 12456677777776543 222 12468889998887764
Q ss_pred HHHhhCCCCCCCCeEEEeeecCCCCCCCchhccCCCCEEEEecCCCCCcCCC-CCCCCccceeecccccC
Q 002308 748 LLLEALQPPLNLKELEIHYYGGNTVFPSWMASLTNLKSLDLCFCENCEQLPP-LGKLPSLEQLFISYMSS 816 (938)
Q Consensus 748 ~~~~~l~~~~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~l~~-l~~l~~L~~L~L~~~~~ 816 (938)
++. .+++|+.|++++|.+.. +|.. ..+|+.|+|++|.+. .+|. ++++++|+.|+|++|+.
T Consensus 397 -LP~---l~s~L~~LdLS~N~Lss-IP~l---~~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs~N~L 457 (788)
T PRK15387 397 -LPV---LPSELKELMVSGNRLTS-LPML---PSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPL 457 (788)
T ss_pred -CCC---cccCCCEEEccCCcCCC-CCcc---hhhhhhhhhccCccc-ccChHHhhccCCCeEECCCCCC
Confidence 221 23578999999999887 7764 346788999998766 4565 88899999999999873
No 17
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.56 E-value=4.7e-15 Score=172.36 Aligned_cols=98 Identities=22% Similarity=0.296 Sum_probs=68.8
Q ss_pred CCeeEEecCCCCCCcccCccccccCCCCeeeecCCccccccccccCCCCccEEEcCCCCCcccccccccccCccceeecC
Q 002308 568 TSLRALDFPSFYLPLEIPRNIEKLVHLRYLNLSDQKIKKLPETLCELYNLEKLDISGCSDLRELPKGIGKLINMKHLLNS 647 (938)
Q Consensus 568 ~~Lr~L~L~~n~~~~~lp~~~~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~l~~~~~l~~lp~~i~~l~~L~~L~l~ 647 (938)
.+..+|+++++. ...+|..+. .+|+.|+|++|.++.+|..+. .+|++|++++|. +..+|..+. .+|+.|+++
T Consensus 178 ~~~~~L~L~~~~-LtsLP~~Ip--~~L~~L~Ls~N~LtsLP~~l~--~nL~~L~Ls~N~-LtsLP~~l~--~~L~~L~Ls 249 (754)
T PRK15370 178 NNKTELRLKILG-LTTIPACIP--EQITTLILDNNELKSLPENLQ--GNIKTLYANSNQ-LTSIPATLP--DTIQEMELS 249 (754)
T ss_pred cCceEEEeCCCC-cCcCCcccc--cCCcEEEecCCCCCcCChhhc--cCCCEEECCCCc-cccCChhhh--ccccEEECc
Confidence 356778888877 556776554 478888888888888887664 478888888887 667776543 468888888
Q ss_pred CCcccccCCccCCCCCCCcccCeeEecCC
Q 002308 648 GTRSLRYMPVGIGRLTGLRTLGEFHVSAG 676 (938)
Q Consensus 648 ~~~~~~~~p~~l~~l~~L~~L~l~~~~~~ 676 (938)
+|.+ ..+|..+. ++|+.|++++|.+.
T Consensus 250 ~N~L-~~LP~~l~--s~L~~L~Ls~N~L~ 275 (754)
T PRK15370 250 INRI-TELPERLP--SALQSLDLFHNKIS 275 (754)
T ss_pred CCcc-CcCChhHh--CCCCEEECcCCccC
Confidence 8754 35666553 46777777766554
No 18
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.54 E-value=1.1e-14 Score=169.29 Aligned_cols=242 Identities=20% Similarity=0.234 Sum_probs=140.8
Q ss_pred cceEEEEccCCCcCcccccccCceeEEeccCCCCCCCCchhhHHHHHhccCCCeeEEecCCCCCCcccCccccccCCCCe
Q 002308 517 VRHLMLIMGKESTFPISTCRAKRIRSLLIEWPEFGHSSLNGEILEELFRESTSLRALDFPSFYLPLEIPRNIEKLVHLRY 596 (938)
Q Consensus 517 ~r~l~l~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~n~~~~~lp~~~~~l~~L~~ 596 (938)
...+.+..++++.+|..+. ++++.|.+.+|.+. .++...+ ++|+.|+|++|. ...+|..+. .+|+.
T Consensus 180 ~~~L~L~~~~LtsLP~~Ip--~~L~~L~Ls~N~Lt------sLP~~l~---~nL~~L~Ls~N~-LtsLP~~l~--~~L~~ 245 (754)
T PRK15370 180 KTELRLKILGLTTIPACIP--EQITTLILDNNELK------SLPENLQ---GNIKTLYANSNQ-LTSIPATLP--DTIQE 245 (754)
T ss_pred ceEEEeCCCCcCcCCcccc--cCCcEEEecCCCCC------cCChhhc---cCCCEEECCCCc-cccCChhhh--ccccE
Confidence 3445555555555554332 35666666666542 2222222 366777777766 335555443 35677
Q ss_pred eeecCCccccccccccCCCCccEEEcCCCCCcccccccccccCccceeecCCCcccccCCccCCCCCCCcccCeeEecCC
Q 002308 597 LNLSDQKIKKLPETLCELYNLEKLDISGCSDLRELPKGIGKLINMKHLLNSGTRSLRYMPVGIGRLTGLRTLGEFHVSAG 676 (938)
Q Consensus 597 L~L~~~~i~~lp~~i~~l~~L~~L~l~~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~~~ 676 (938)
|+|++|.+..+|..+. .+|++|++++|. +..+|..+. ++|++|++++|.+ ..+|..+. ++|+.|++++|.+.
T Consensus 246 L~Ls~N~L~~LP~~l~--s~L~~L~Ls~N~-L~~LP~~l~--~sL~~L~Ls~N~L-t~LP~~lp--~sL~~L~Ls~N~Lt 317 (754)
T PRK15370 246 MELSINRITELPERLP--SALQSLDLFHNK-ISCLPENLP--EELRYLSVYDNSI-RTLPAHLP--SGITHLNVQSNSLT 317 (754)
T ss_pred EECcCCccCcCChhHh--CCCCEEECcCCc-cCccccccC--CCCcEEECCCCcc-ccCcccch--hhHHHHHhcCCccc
Confidence 7777777776666553 367777777665 455665443 4677777776633 34554332 35666666666655
Q ss_pred CCCCCCcccccccccccccCcceeecCcCCCCChhhhhhhhccCCCcCCceEEEEecCCCCCCCCCccchHHHHhhCCCC
Q 002308 677 GGVDGSKACRLESLKNLEHLQVCCIRRLGDVSDVGEAKLLELDKKKYLSRLRLEFDKKGGGGGRRKNEDDQLLLEALQPP 756 (938)
Q Consensus 677 ~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~~ 756 (938)
.. +.. ..++|+.|.+.+|.+... +. .+ .++|+.|++++|.+.. ++..+ +
T Consensus 318 ~L-P~~------l~~sL~~L~Ls~N~Lt~L-P~-------~l--~~sL~~L~Ls~N~L~~------------LP~~l--p 366 (754)
T PRK15370 318 AL-PET------LPPGLKTLEAGENALTSL-PA-------SL--PPELQVLDVSKNQITV------------LPETL--P 366 (754)
T ss_pred cC-Ccc------ccccceeccccCCccccC-Ch-------hh--cCcccEEECCCCCCCc------------CChhh--c
Confidence 31 111 124566666666654432 21 11 2567788888777653 22222 3
Q ss_pred CCCCeEEEeeecCCCCCCCchhccCCCCEEEEecCCCCCcCCC-----CCCCCccceeeccccc
Q 002308 757 LNLKELEIHYYGGNTVFPSWMASLTNLKSLDLCFCENCEQLPP-----LGKLPSLEQLFISYMS 815 (938)
Q Consensus 757 ~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~l~~-----l~~l~~L~~L~L~~~~ 815 (938)
++|+.|+|++|.+.. +|..+. .+|+.|++++|.+. .+|. ++.+|++..|++.+|+
T Consensus 367 ~~L~~LdLs~N~Lt~-LP~~l~--~sL~~LdLs~N~L~-~LP~sl~~~~~~~~~l~~L~L~~Np 426 (754)
T PRK15370 367 PTITTLDVSRNALTN-LPENLP--AALQIMQASRNNLV-RLPESLPHFRGEGPQPTRIIVEYNP 426 (754)
T ss_pred CCcCEEECCCCcCCC-CCHhHH--HHHHHHhhccCCcc-cCchhHHHHhhcCCCccEEEeeCCC
Confidence 578888888888877 776553 36888888888665 3332 3455778888888876
No 19
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.54 E-value=1.2e-15 Score=153.61 Aligned_cols=272 Identities=19% Similarity=0.154 Sum_probs=154.7
Q ss_pred eEEeeCCcccccCCCCcccccceEEEEccCCCcCc-ccccccCceeEEeccCCCCCCCCchhhHHHHHhccCCCeeEEec
Q 002308 497 FSLEVNGSEELNVPNSLDEKVRHLMLIMGKESTFP-ISTCRAKRIRSLLIEWPEFGHSSLNGEILEELFRESTSLRALDF 575 (938)
Q Consensus 497 ~~~~~~~~~~~~~~~~~~~~~r~l~l~~~~~~~~~-~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L 575 (938)
-.+++.......+|.+.++....+.+..|.++.+| .+|..+++||.|+|+.|.+ ..|-++.|.+++.|-.|-+
T Consensus 49 ~~VdCr~~GL~eVP~~LP~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~I------s~I~p~AF~GL~~l~~Lvl 122 (498)
T KOG4237|consen 49 GIVDCRGKGLTEVPANLPPETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNI------SFIAPDAFKGLASLLSLVL 122 (498)
T ss_pred ceEEccCCCcccCcccCCCcceEEEeccCCcccCChhhccchhhhceecccccch------hhcChHhhhhhHhhhHHHh
Confidence 34556666666778888888889999988888755 4667777788887777764 4455666777777766665
Q ss_pred CCCCCCcccCc-cccccCCCCeeeecCCcccccc-ccccCCCCccEEEcCCCCCcccccc-cccccCccceeecCCCccc
Q 002308 576 PSFYLPLEIPR-NIEKLVHLRYLNLSDQKIKKLP-ETLCELYNLEKLDISGCSDLRELPK-GIGKLINMKHLLNSGTRSL 652 (938)
Q Consensus 576 ~~n~~~~~lp~-~~~~l~~L~~L~L~~~~i~~lp-~~i~~l~~L~~L~l~~~~~l~~lp~-~i~~l~~L~~L~l~~~~~~ 652 (938)
.+|+-+..+|+ .|+.|..|+-|.+.-|.+..++ ..+..|++|..|.+..|. ++.++. .+..+..++++.+..|...
T Consensus 123 yg~NkI~~l~k~~F~gL~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn~-~q~i~~~tf~~l~~i~tlhlA~np~i 201 (498)
T KOG4237|consen 123 YGNNKITDLPKGAFGGLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDNK-IQSICKGTFQGLAAIKTLHLAQNPFI 201 (498)
T ss_pred hcCCchhhhhhhHhhhHHHHHHHhcChhhhcchhHHHHHHhhhcchhcccchh-hhhhccccccchhccchHhhhcCccc
Confidence 55332555553 4667777777777777776443 456777777777777776 555555 5666777777766655311
Q ss_pred ------------ccCCccCCCCCCCcccCeeEecCCCC---------------------CCC-CcccccccccccccCcc
Q 002308 653 ------------RYMPVGIGRLTGLRTLGEFHVSAGGG---------------------VDG-SKACRLESLKNLEHLQV 698 (938)
Q Consensus 653 ------------~~~p~~l~~l~~L~~L~l~~~~~~~~---------------------~~~-~~~~~l~~l~~L~~L~l 698 (938)
...|..++......-..+..+..... ... ....-|..|++|+.|++
T Consensus 202 cdCnL~wla~~~a~~~ietsgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnl 281 (498)
T KOG4237|consen 202 CDCNLPWLADDLAMNPIETSGARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNL 281 (498)
T ss_pred cccccchhhhHHhhchhhcccceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEecc
Confidence 11111122211111111111110000 000 00011444555555555
Q ss_pred eeecCcCCCCChhhhhhhhccCCCcCCceEEEEecCCCCCCCCCccchHHHHhhCCCCCCCCeEEEeeecCCCCCCCchh
Q 002308 699 CCIRRLGDVSDVGEAKLLELDKKKYLSRLRLEFDKKGGGGGRRKNEDDQLLLEALQPPLNLKELEIHYYGGNTVFPSWMA 778 (938)
Q Consensus 699 ~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~p~~~~ 778 (938)
++|.+...-.. ++.+...++.|.|..|.+.. .--..|..+..|+.|+|++|.++..-|..|.
T Consensus 282 snN~i~~i~~~-------aFe~~a~l~eL~L~~N~l~~-----------v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~ 343 (498)
T KOG4237|consen 282 SNNKITRIEDG-------AFEGAAELQELYLTRNKLEF-----------VSSGMFQGLSGLKTLSLYDNQITTVAPGAFQ 343 (498)
T ss_pred CCCccchhhhh-------hhcchhhhhhhhcCcchHHH-----------HHHHhhhccccceeeeecCCeeEEEeccccc
Confidence 55554433222 44455555555555554432 1123456667777777777777765566666
Q ss_pred ccCCCCEEEEecCCC
Q 002308 779 SLTNLKSLDLCFCEN 793 (938)
Q Consensus 779 ~l~~L~~L~L~~~~~ 793 (938)
.+..|..|+|-.|++
T Consensus 344 ~~~~l~~l~l~~Np~ 358 (498)
T KOG4237|consen 344 TLFSLSTLNLLSNPF 358 (498)
T ss_pred ccceeeeeehccCcc
Confidence 677777777766543
No 20
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.46 E-value=1.3e-15 Score=135.41 Aligned_cols=152 Identities=23% Similarity=0.289 Sum_probs=98.9
Q ss_pred cccceEEEEccCCCcCcccccccCceeEEeccCCCCCCCCchhhHHHHHhccCCCeeEEecCCCCCCcccCccccccCCC
Q 002308 515 EKVRHLMLIMGKESTFPISTCRAKRIRSLLIEWPEFGHSSLNGEILEELFRESTSLRALDFPSFYLPLEIPRNIEKLVHL 594 (938)
Q Consensus 515 ~~~r~l~l~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~n~~~~~lp~~~~~l~~L 594 (938)
..+.++.+++|+++..|+.+..+.+|++|++++|.+ .+.|.. ++.+++||.|+++.|. ...+|..||.++-|
T Consensus 33 s~ITrLtLSHNKl~~vppnia~l~nlevln~~nnqi------e~lp~~-issl~klr~lnvgmnr-l~~lprgfgs~p~l 104 (264)
T KOG0617|consen 33 SNITRLTLSHNKLTVVPPNIAELKNLEVLNLSNNQI------EELPTS-ISSLPKLRILNVGMNR-LNILPRGFGSFPAL 104 (264)
T ss_pred hhhhhhhcccCceeecCCcHHHhhhhhhhhcccchh------hhcChh-hhhchhhhheecchhh-hhcCccccCCCchh
Confidence 456677777777776777776777777776666653 333333 5666667777766666 44566666666777
Q ss_pred CeeeecCCccc--cccccccCCCCccEEEcCCCCCcccccccccccCccceeecCCCcccccCCccCCCCCCCcccCeeE
Q 002308 595 RYLNLSDQKIK--KLPETLCELYNLEKLDISGCSDLRELPKGIGKLINMKHLLNSGTRSLRYMPVGIGRLTGLRTLGEFH 672 (938)
Q Consensus 595 ~~L~L~~~~i~--~lp~~i~~l~~L~~L~l~~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~ 672 (938)
+.|||++|++. .+|..|..+..|+-|+++.|. .+.+|.+++++++|+.|.+..|. +-.+|..++.++.|++|.+.+
T Consensus 105 evldltynnl~e~~lpgnff~m~tlralyl~dnd-fe~lp~dvg~lt~lqil~lrdnd-ll~lpkeig~lt~lrelhiqg 182 (264)
T KOG0617|consen 105 EVLDLTYNNLNENSLPGNFFYMTTLRALYLGDND-FEILPPDVGKLTNLQILSLRDND-LLSLPKEIGDLTRLRELHIQG 182 (264)
T ss_pred hhhhccccccccccCCcchhHHHHHHHHHhcCCC-cccCChhhhhhcceeEEeeccCc-hhhCcHHHHHHHHHHHHhccc
Confidence 77777666665 566666666666666666665 66666667777777777666663 335666666666666666666
Q ss_pred ecCC
Q 002308 673 VSAG 676 (938)
Q Consensus 673 ~~~~ 676 (938)
|.+.
T Consensus 183 nrl~ 186 (264)
T KOG0617|consen 183 NRLT 186 (264)
T ss_pred ceee
Confidence 6554
No 21
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.45 E-value=1.5e-15 Score=134.92 Aligned_cols=136 Identities=22% Similarity=0.269 Sum_probs=68.5
Q ss_pred hccCCCeeEEecCCCCCCcccCccccccCCCCeeeecCCccccccccccCCCCccEEEcCCCCCcc-cccccccccCccc
Q 002308 564 FRESTSLRALDFPSFYLPLEIPRNIEKLVHLRYLNLSDQKIKKLPETLCELYNLEKLDISGCSDLR-ELPKGIGKLINMK 642 (938)
Q Consensus 564 ~~~~~~Lr~L~L~~n~~~~~lp~~~~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~l~~~~~l~-~lp~~i~~l~~L~ 642 (938)
+..+.+|++|++.+|+ +..+|.+++.|+.|+.|++.-|++..+|..|+.++-|++||+.+|...+ .+|..|..|+.|+
T Consensus 52 ia~l~nlevln~~nnq-ie~lp~~issl~klr~lnvgmnrl~~lprgfgs~p~levldltynnl~e~~lpgnff~m~tlr 130 (264)
T KOG0617|consen 52 IAELKNLEVLNLSNNQ-IEELPTSISSLPKLRILNVGMNRLNILPRGFGSFPALEVLDLTYNNLNENSLPGNFFYMTTLR 130 (264)
T ss_pred HHHhhhhhhhhcccch-hhhcChhhhhchhhhheecchhhhhcCccccCCCchhhhhhccccccccccCCcchhHHHHHH
Confidence 3444555555555555 4445555555555555555555555555555555555555555544222 3455555555555
Q ss_pred eeecCCCcccccCCccCCCCCCCcccCeeEecCCCCCCCCcccccccccccccCcceeecCcCC
Q 002308 643 HLLNSGTRSLRYMPVGIGRLTGLRTLGEFHVSAGGGVDGSKACRLESLKNLEHLQVCCIRRLGD 706 (938)
Q Consensus 643 ~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~ 706 (938)
-|+++.| -...+|..++++++||.|.+..|.+.+ ++..++.+..|+.|.+.+|+....
T Consensus 131 alyl~dn-dfe~lp~dvg~lt~lqil~lrdndll~-----lpkeig~lt~lrelhiqgnrl~vl 188 (264)
T KOG0617|consen 131 ALYLGDN-DFEILPPDVGKLTNLQILSLRDNDLLS-----LPKEIGDLTRLRELHIQGNRLTVL 188 (264)
T ss_pred HHHhcCC-CcccCChhhhhhcceeEEeeccCchhh-----CcHHHHHHHHHHHHhcccceeeec
Confidence 5555554 233455555555555555555554433 223344455555555555544433
No 22
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.41 E-value=5.5e-15 Score=148.96 Aligned_cols=289 Identities=15% Similarity=0.048 Sum_probs=183.2
Q ss_pred ccCCCcCcccccccCceeEEeccCCCCCCCCchhhHHHHHhccCCCeeEEecCCCCCCcccCccccccCCCCeeeecC-C
Q 002308 524 MGKESTFPISTCRAKRIRSLLIEWPEFGHSSLNGEILEELFRESTSLRALDFPSFYLPLEIPRNIEKLVHLRYLNLSD-Q 602 (938)
Q Consensus 524 ~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~n~~~~~lp~~~~~l~~L~~L~L~~-~ 602 (938)
...+..+|..+. +....+.|..|.+ ..+|+..|+.+++||.|||++|.+...-|+.|..+..|..|-+.+ |
T Consensus 55 ~~GL~eVP~~LP--~~tveirLdqN~I------~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~N 126 (498)
T KOG4237|consen 55 GKGLTEVPANLP--PETVEIRLDQNQI------SSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNN 126 (498)
T ss_pred CCCcccCcccCC--CcceEEEeccCCc------ccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCC
Confidence 334444554432 3456677777764 678899999999999999999997777899999999988888777 8
Q ss_pred ccccccc-cccCCCCccEEEcCCCCCcccccccccccCccceeecCCCcccccCCc-cCCCCCCCcccCeeEecCCCCCC
Q 002308 603 KIKKLPE-TLCELYNLEKLDISGCSDLRELPKGIGKLINMKHLLNSGTRSLRYMPV-GIGRLTGLRTLGEFHVSAGGGVD 680 (938)
Q Consensus 603 ~i~~lp~-~i~~l~~L~~L~l~~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~p~-~l~~l~~L~~L~l~~~~~~~~~~ 680 (938)
+|+.+|+ .|.+|..|+.|.+.-|+..-.....+..|++|..|.+..| ....++. .+..+.+++++.+..|.+..
T Consensus 127 kI~~l~k~~F~gL~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn-~~q~i~~~tf~~l~~i~tlhlA~np~ic--- 202 (498)
T KOG4237|consen 127 KITDLPKGAFGGLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDN-KIQSICKGTFQGLAAIKTLHLAQNPFIC--- 202 (498)
T ss_pred chhhhhhhHhhhHHHHHHHhcChhhhcchhHHHHHHhhhcchhcccch-hhhhhccccccchhccchHhhhcCcccc---
Confidence 8999997 5899999999999999866667778999999999999988 4455665 58888999999887766433
Q ss_pred CCcccccccccccccCcceeecCcC----CCCChh-hhhhhhccCC---CcCCce--EEEEecCCCCCCCCCccchHHHH
Q 002308 681 GSKACRLESLKNLEHLQVCCIRRLG----DVSDVG-EAKLLELDKK---KYLSRL--RLEFDKKGGGGGRRKNEDDQLLL 750 (938)
Q Consensus 681 ~~~~~~l~~l~~L~~L~l~~~~~~~----~~~~~~-~~~~~~l~~~---~~L~~L--~L~~~~~~~~~~~~~~~~~~~~~ 750 (938)
..+++.+..........++ ..+... .......... ..++.+ .++.+...+ ...-.
T Consensus 203 ------dCnL~wla~~~a~~~ietsgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d---------~~cP~ 267 (498)
T KOG4237|consen 203 ------DCNLPWLADDLAMNPIETSGARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPD---------SICPA 267 (498)
T ss_pred ------ccccchhhhHHhhchhhcccceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcC---------CcChH
Confidence 1222222211100000000 000000 0000000000 001111 111111000 01122
Q ss_pred hhCCCCCCCCeEEEeeecCCCCCCCchhccCCCCEEEEecCCCCCcCCC-CCCCCccceeecccccCceEeCcccccCCC
Q 002308 751 EALQPPLNLKELEIHYYGGNTVFPSWMASLTNLKSLDLCFCENCEQLPP-LGKLPSLEQLFISYMSSVKRVGDEFLGVES 829 (938)
Q Consensus 751 ~~l~~~~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~l~~-l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~ 829 (938)
..+..+++|++|+|++|.++..-+.||..+..|+.|.|..|++...-.. |.++..|+.|+|++|+.-...|..|-...+
T Consensus 268 ~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~ 347 (498)
T KOG4237|consen 268 KCFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFS 347 (498)
T ss_pred HHHhhcccceEeccCCCccchhhhhhhcchhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEecccccccce
Confidence 3477778888888888888886677888888888888888865443333 778888888888888733334444444455
Q ss_pred CCCCCCCCCc
Q 002308 830 DRHDSSSSSS 839 (938)
Q Consensus 830 l~~~~~~~~~ 839 (938)
+..+++..|.
T Consensus 348 l~~l~l~~Np 357 (498)
T KOG4237|consen 348 LSTLNLLSNP 357 (498)
T ss_pred eeeeehccCc
Confidence 5555554444
No 23
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.40 E-value=1.5e-14 Score=157.14 Aligned_cols=91 Identities=21% Similarity=0.123 Sum_probs=52.3
Q ss_pred ccCCCcCCceEEEEecCCCCCCCCCccchHHHHhhCCCCCCCCeEEEeeecCCCCCCCchh-----ccCCCCEEEEecCC
Q 002308 718 LDKKKYLSRLRLEFDKKGGGGGRRKNEDDQLLLEALQPPLNLKELEIHYYGGNTVFPSWMA-----SLTNLKSLDLCFCE 792 (938)
Q Consensus 718 l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~p~~~~-----~l~~L~~L~L~~~~ 792 (938)
+..+++|+.|++++|.+.+ .....+...+..+++|+.|++++|.+.......+. ..+.|+.|++++|.
T Consensus 189 l~~~~~L~~L~L~~n~i~~-------~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~ 261 (319)
T cd00116 189 LKANCNLEVLDLNNNGLTD-------EGASALAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCND 261 (319)
T ss_pred HHhCCCCCEEeccCCccCh-------HHHHHHHHHhcccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCC
Confidence 3444677777777766543 11233455566667777777777766542111111 13677777777776
Q ss_pred CCC----cCC-CCCCCCccceeeccccc
Q 002308 793 NCE----QLP-PLGKLPSLEQLFISYMS 815 (938)
Q Consensus 793 ~~~----~l~-~l~~l~~L~~L~L~~~~ 815 (938)
+.+ .+. .+..+++|+.|++++|.
T Consensus 262 i~~~~~~~l~~~~~~~~~L~~l~l~~N~ 289 (319)
T cd00116 262 ITDDGAKDLAEVLAEKESLLELDLRGNK 289 (319)
T ss_pred CCcHHHHHHHHHHhcCCCccEEECCCCC
Confidence 542 111 14555777777777776
No 24
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=99.40 E-value=2.2e-10 Score=127.84 Aligned_cols=319 Identities=15% Similarity=0.102 Sum_probs=186.3
Q ss_pred CCCCceecchhhHHHHHHHHhccCcccCCCeEEEEEEccCCChHHHHHHHHhhhhhhhcccCeEEEEEeCCCCCHHHHHH
Q 002308 147 IDEEEICGRVGERNALLSMLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNHVEVKREFDKTLWVCVSETFDEFRIAK 226 (938)
Q Consensus 147 ~~~~~~vGr~~~~~~l~~~l~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~ 226 (938)
..|+.++||+++++++...+...-. +.....+.|+|++|+|||++++.++++.......-.++++++....+...++.
T Consensus 27 ~~P~~l~~Re~e~~~l~~~l~~~~~--~~~~~~~lI~G~~GtGKT~l~~~v~~~l~~~~~~~~~v~in~~~~~~~~~~~~ 104 (394)
T PRK00411 27 YVPENLPHREEQIEELAFALRPALR--GSRPLNVLIYGPPGTGKTTTVKKVFEELEEIAVKVVYVYINCQIDRTRYAIFS 104 (394)
T ss_pred CcCCCCCCHHHHHHHHHHHHHHHhC--CCCCCeEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEECCcCCCHHHHHH
Confidence 3567899999999999999865322 22445678999999999999999999643332224567777777778889999
Q ss_pred HHHHHhcCCC--CCCCcHHHHHHHHHHHhc--CceEEEEEecCCCCC-ccChhHHHHhhh--CCCCCcE--EEEEcCChh
Q 002308 227 AMLEALTGST--SNLNALQSLLISIDESIA--GKRFLLVLDDVWDGD-YIKWEPFYRCLK--KGLHGSK--ILITTRKES 297 (938)
Q Consensus 227 ~i~~~l~~~~--~~~~~~~~~~~~l~~~l~--~~~~LlVlDdv~~~~-~~~~~~l~~~l~--~~~~gs~--ilvTtr~~~ 297 (938)
.++.++.... ......++....+.+.+. +++.+||||+++... ....+.+...+. ....+++ +|.++....
T Consensus 105 ~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~viviDE~d~l~~~~~~~~l~~l~~~~~~~~~~~v~vI~i~~~~~ 184 (394)
T PRK00411 105 EIARQLFGHPPPSSGLSFDELFDKIAEYLDERDRVLIVALDDINYLFEKEGNDVLYSLLRAHEEYPGARIGVIGISSDLT 184 (394)
T ss_pred HHHHHhcCCCCCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCHhHhhccCCchHHHHHHHhhhccCCCeEEEEEEECCcc
Confidence 9999987522 122345666666666665 457899999997642 112223333322 1123333 566655543
Q ss_pred hhhhhc-------CCceEeCCCCChHHHHHHHHHhhcCC--CCCchhhHHHHHHHHHHHhcCCChhHHHHHHhhh--c--
Q 002308 298 IVSMMR-------STDIISIEELAEEECWVLFKRLAFFG--RSTEECEKLEQIGQRIARKCKGLPLAAKTMGSLM--S-- 364 (938)
Q Consensus 298 v~~~~~-------~~~~~~l~~L~~~~~~~lf~~~~~~~--~~~~~~~~~~~~~~~i~~~~~g~Plai~~~~~~l--~-- 364 (938)
+..... ....+.+.+++.++..+++..++... ........++.+++......|..+.|+.++-.+. +
T Consensus 185 ~~~~l~~~~~s~~~~~~i~f~py~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd~r~a~~ll~~a~~~a~~ 264 (394)
T PRK00411 185 FLYILDPRVKSVFRPEEIYFPPYTADEIFDILKDRVEEGFYPGVVDDEVLDLIADLTAREHGDARVAIDLLRRAGLIAER 264 (394)
T ss_pred hhhhcCHHHHhcCCcceeecCCCCHHHHHHHHHHHHHhhcccCCCCHhHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHH
Confidence 322211 13468999999999999999876321 1112233334444444343566777776654322 1
Q ss_pred CC---CCHHHHHHHHhccccccccccccchhhHHhhhccCChhHHHHHhHhccCCC--CcccChHHHHHH--HHHcCCCc
Q 002308 365 SK---KTEEEWKRILNSDLWKVEEIEKGVLTPLWLSYNDLPSRVKRCFSYCAVFPK--DYNIKKDELITL--WMAQGYLS 437 (938)
Q Consensus 365 ~~---~~~~~w~~~~~~~~~~~~~~~~~~~~~l~~sy~~L~~~~k~~f~~~~~fp~--~~~i~~~~li~~--w~a~g~i~ 437 (938)
.. -+.+......... -...+.-.+..||.+.|..+..++...+ ...+....+... .+++..-
T Consensus 265 ~~~~~I~~~~v~~a~~~~----------~~~~~~~~~~~L~~~~k~~L~ai~~~~~~~~~~~~~~~i~~~y~~l~~~~~- 333 (394)
T PRK00411 265 EGSRKVTEEDVRKAYEKS----------EIVHLSEVLRTLPLHEKLLLRAIVRLLKKGGDEVTTGEVYEEYKELCEELG- 333 (394)
T ss_pred cCCCCcCHHHHHHHHHHH----------HHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHcC-
Confidence 11 1334444333321 1222345678999998887777664322 133555555432 2222110
Q ss_pred chhccccchHHHHHHHHHHHHHhccccccccc--CCCCceeEEEechh
Q 002308 438 AEAAEQDEEMETIGEEYFGILASRSFFQEFKK--SYDNRIIACKMHDM 483 (938)
Q Consensus 438 ~~~~~~~~~~~~~~~~~~~~L~~~~ll~~~~~--~~~~~~~~~~mhdl 483 (938)
.... .......++..|...+++..... +..|+.+.++.+..
T Consensus 334 ----~~~~-~~~~~~~~l~~L~~~glI~~~~~~~g~~g~~~~~~~~~~ 376 (394)
T PRK00411 334 ----YEPR-THTRFYEYINKLDMLGIINTRYSGKGGRGRTRLISLSYD 376 (394)
T ss_pred ----CCcC-cHHHHHHHHHHHHhcCCeEEEEecCCCCCCeEEEEecCC
Confidence 0001 12334568999999999986543 33455555555433
No 25
>PRK04841 transcriptional regulator MalT; Provisional
Probab=99.40 E-value=2.7e-11 Score=151.13 Aligned_cols=294 Identities=13% Similarity=0.152 Sum_probs=179.8
Q ss_pred CCCceecchhhHHHHHHHHhccCcccCCCeEEEEEEccCCChHHHHHHHHhhhhhhhcccCeEEEEEeC-CCCCHHHHHH
Q 002308 148 DEEEICGRVGERNALLSMLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNHVEVKREFDKTLWVCVS-ETFDEFRIAK 226 (938)
Q Consensus 148 ~~~~~vGr~~~~~~l~~~l~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~-~~~~~~~~~~ 226 (938)
.++.+|-|..-.+.+.+ ....+++.|+|++|.||||++..+... ++.++|+++. .+.+...+..
T Consensus 12 ~~~~~~~R~rl~~~l~~---------~~~~~~~~v~apaG~GKTtl~~~~~~~------~~~~~w~~l~~~d~~~~~f~~ 76 (903)
T PRK04841 12 RLHNTVVRERLLAKLSG---------ANNYRLVLVTSPAGYGKTTLISQWAAG------KNNLGWYSLDESDNQPERFAS 76 (903)
T ss_pred CccccCcchHHHHHHhc---------ccCCCeEEEECCCCCCHHHHHHHHHHh------CCCeEEEecCcccCCHHHHHH
Confidence 34566777654444432 235789999999999999999998752 2368999986 4456666777
Q ss_pred HHHHHhcCCCCC-------------CCcHHHHHHHHHHHhc--CceEEEEEecCCCCCccChhHHHHhh-hCCCCCcEEE
Q 002308 227 AMLEALTGSTSN-------------LNALQSLLISIDESIA--GKRFLLVLDDVWDGDYIKWEPFYRCL-KKGLHGSKIL 290 (938)
Q Consensus 227 ~i~~~l~~~~~~-------------~~~~~~~~~~l~~~l~--~~~~LlVlDdv~~~~~~~~~~l~~~l-~~~~~gs~il 290 (938)
.++..+...... ..........+-..+. +.+++|||||+...+......+...+ +...++.++|
T Consensus 77 ~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~lvlDD~h~~~~~~~~~~l~~l~~~~~~~~~lv 156 (903)
T PRK04841 77 YLIAALQQATNGHCSKSEALAQKRQYASLSSLFAQLFIELADWHQPLYLVIDDYHLITNPEIHEAMRFFLRHQPENLTLV 156 (903)
T ss_pred HHHHHHHHhcCcccchhhhhhccCCcCCHHHHHHHHHHHHhcCCCCEEEEEeCcCcCCChHHHHHHHHHHHhCCCCeEEE
Confidence 777777421111 0122222332323332 67899999999876544444444444 4445667888
Q ss_pred EEcCChhhh---hhhcCCceEeCC----CCChHHHHHHHHHhhcCCCCCchhhHHHHHHHHHHHhcCCChhHHHHHHhhh
Q 002308 291 ITTRKESIV---SMMRSTDIISIE----ELAEEECWVLFKRLAFFGRSTEECEKLEQIGQRIARKCKGLPLAAKTMGSLM 363 (938)
Q Consensus 291 vTtr~~~v~---~~~~~~~~~~l~----~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~~~~~l 363 (938)
||||...-. ..........+. +|+.+|+.++|....... .. .+...+|.+.|+|.|+++..++..+
T Consensus 157 ~~sR~~~~~~~~~l~~~~~~~~l~~~~l~f~~~e~~~ll~~~~~~~---~~----~~~~~~l~~~t~Gwp~~l~l~~~~~ 229 (903)
T PRK04841 157 VLSRNLPPLGIANLRVRDQLLEIGSQQLAFDHQEAQQFFDQRLSSP---IE----AAESSRLCDDVEGWATALQLIALSA 229 (903)
T ss_pred EEeCCCCCCchHhHHhcCcceecCHHhCCCCHHHHHHHHHhccCCC---CC----HHHHHHHHHHhCChHHHHHHHHHHH
Confidence 999984211 111112345565 999999999998764321 11 2236789999999999999988776
Q ss_pred cCCCC-HHHHHHHHhcccccccc-ccccchhhHH-hhhccCChhHHHHHhHhccCCCCcccChHHHHHHHHHcCCCcchh
Q 002308 364 SSKKT-EEEWKRILNSDLWKVEE-IEKGVLTPLW-LSYNDLPSRVKRCFSYCAVFPKDYNIKKDELITLWMAQGYLSAEA 440 (938)
Q Consensus 364 ~~~~~-~~~w~~~~~~~~~~~~~-~~~~~~~~l~-~sy~~L~~~~k~~f~~~~~fp~~~~i~~~~li~~w~a~g~i~~~~ 440 (938)
..... .... . ..+.. ....+...+. -.++.||++.+.++...|+++ .++.+.+-.. ...
T Consensus 230 ~~~~~~~~~~---~----~~~~~~~~~~~~~~l~~~v~~~l~~~~~~~l~~~a~~~---~~~~~l~~~l------~~~-- 291 (903)
T PRK04841 230 RQNNSSLHDS---A----RRLAGINASHLSDYLVEEVLDNVDLETRHFLLRCSVLR---SMNDALIVRV------TGE-- 291 (903)
T ss_pred hhCCCchhhh---h----HhhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcccc---cCCHHHHHHH------cCC--
Confidence 54321 1100 0 01111 1122444433 347899999999999999986 3443322111 111
Q ss_pred ccccchHHHHHHHHHHHHHhcccccccccCCCCceeEEEechhHHHHHHHhh
Q 002308 441 AEQDEEMETIGEEYFGILASRSFFQEFKKSYDNRIIACKMHDMVHDLAQFVS 492 (938)
Q Consensus 441 ~~~~~~~~~~~~~~~~~L~~~~ll~~~~~~~~~~~~~~~mhdlv~~~~~~~~ 492 (938)
+.+...++++.+.+++..... +....|+.|++++++.....
T Consensus 292 --------~~~~~~L~~l~~~~l~~~~~~---~~~~~yr~H~L~r~~l~~~l 332 (903)
T PRK04841 292 --------ENGQMRLEELERQGLFIQRMD---DSGEWFRYHPLFASFLRHRC 332 (903)
T ss_pred --------CcHHHHHHHHHHCCCeeEeec---CCCCEEehhHHHHHHHHHHH
Confidence 113456888999998743211 11135788999999997664
No 26
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.38 E-value=1.4e-13 Score=149.44 Aligned_cols=92 Identities=25% Similarity=0.197 Sum_probs=54.0
Q ss_pred hccCCCcCCceEEEEecCCCCCCCCCccchHHHHhhC-CCCCCCCeEEEeeecCCCC----CCCchhccCCCCEEEEecC
Q 002308 717 ELDKKKYLSRLRLEFDKKGGGGGRRKNEDDQLLLEAL-QPPLNLKELEIHYYGGNTV----FPSWMASLTNLKSLDLCFC 791 (938)
Q Consensus 717 ~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l-~~~~~L~~L~l~~~~~~~~----~p~~~~~l~~L~~L~L~~~ 791 (938)
.+..+++|+.|++++|.+.+ .....+...+ .+.+.|++|++++|.++.. +...+..+++|+.|++++|
T Consensus 216 ~~~~~~~L~~L~ls~n~l~~-------~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N 288 (319)
T cd00116 216 TLASLKSLEVLNLGDNNLTD-------AGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGN 288 (319)
T ss_pred HhcccCCCCEEecCCCcCch-------HHHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCC
Confidence 45556777777777776543 1111222222 2356788888888877521 2333445678888888888
Q ss_pred CCCCc----CCC-CCCC-Cccceeeccccc
Q 002308 792 ENCEQ----LPP-LGKL-PSLEQLFISYMS 815 (938)
Q Consensus 792 ~~~~~----l~~-l~~l-~~L~~L~L~~~~ 815 (938)
.+.+. +.. +... +.|+.|++.+|+
T Consensus 289 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (319)
T cd00116 289 KFGEEGAQLLAESLLEPGNELESLWVKDDS 318 (319)
T ss_pred CCcHHHHHHHHHHHhhcCCchhhcccCCCC
Confidence 76543 222 3334 677888777664
No 27
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=99.25 E-value=1.8e-12 Score=153.32 Aligned_cols=323 Identities=27% Similarity=0.304 Sum_probs=207.2
Q ss_pred cccCceeEEeccCCCCCCCCchhhHHHHHhccCCCeeEEecCCCCC-Cccc-CccccccCCCCeeeecCCc-cccccccc
Q 002308 535 CRAKRIRSLLIEWPEFGHSSLNGEILEELFRESTSLRALDFPSFYL-PLEI-PRNIEKLVHLRYLNLSDQK-IKKLPETL 611 (938)
Q Consensus 535 ~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~n~~-~~~l-p~~~~~l~~L~~L~L~~~~-i~~lp~~i 611 (938)
.+....|...+.+|.+.+ ++. -..++.|++|-+..|.. ...+ +..|..|+.|++|||++|. +..+|++|
T Consensus 520 ~~~~~~rr~s~~~~~~~~------~~~--~~~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I 591 (889)
T KOG4658|consen 520 KSWNSVRRMSLMNNKIEH------IAG--SSENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSI 591 (889)
T ss_pred cchhheeEEEEeccchhh------ccC--CCCCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHH
Confidence 344667777777665311 111 23456899999999862 2333 3447889999999999875 77999999
Q ss_pred cCCCCccEEEcCCCCCcccccccccccCccceeecCCCcccccCCccCCCCCCCcccCeeEecCCCCCCCCccccccccc
Q 002308 612 CELYNLEKLDISGCSDLRELPKGIGKLINMKHLLNSGTRSLRYMPVGIGRLTGLRTLGEFHVSAGGGVDGSKACRLESLK 691 (938)
Q Consensus 612 ~~l~~L~~L~l~~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~l~ 691 (938)
++|-+|++|+++++. +..+|.++.+|.+|.+|++..+.....+|..+..|.+|++|.+....... ....+.++.
T Consensus 592 ~~Li~LryL~L~~t~-I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~-----~~~~l~el~ 665 (889)
T KOG4658|consen 592 GELVHLRYLDLSDTG-ISHLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSALSN-----DKLLLKELE 665 (889)
T ss_pred hhhhhhhcccccCCC-ccccchHHHHHHhhheeccccccccccccchhhhcccccEEEeecccccc-----chhhHHhhh
Confidence 999999999999998 88999999999999999999987766676666679999999987655211 133456666
Q ss_pred ccccCcceeecCcCCCCChhhhhhhhccCCCcCC----ceEEEEecCCCCCCCCCccchHHHHhhCCCCCCCCeEEEeee
Q 002308 692 NLEHLQVCCIRRLGDVSDVGEAKLLELDKKKYLS----RLRLEFDKKGGGGGRRKNEDDQLLLEALQPPLNLKELEIHYY 767 (938)
Q Consensus 692 ~L~~L~l~~~~~~~~~~~~~~~~~~~l~~~~~L~----~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~ 767 (938)
+|++|....+..... .....+..+..|. .+.+.++.. ......+..+.+|+.|.+.+|
T Consensus 666 ~Le~L~~ls~~~~s~------~~~e~l~~~~~L~~~~~~l~~~~~~~------------~~~~~~~~~l~~L~~L~i~~~ 727 (889)
T KOG4658|consen 666 NLEHLENLSITISSV------LLLEDLLGMTRLRSLLQSLSIEGCSK------------RTLISSLGSLGNLEELSILDC 727 (889)
T ss_pred cccchhhheeecchh------HhHhhhhhhHHHHHHhHhhhhccccc------------ceeecccccccCcceEEEEcC
Confidence 666666654433221 0011122222222 222222111 124456677789999999999
Q ss_pred cCCCCCCCchh-----c-cCCCCEEEEecCCCCCcCCCCCCCCccceeecccccCceEeCcccccCCCCCCCCCCCCccc
Q 002308 768 GGNTVFPSWMA-----S-LTNLKSLDLCFCENCEQLPPLGKLPSLEQLFISYMSSVKRVGDEFLGVESDRHDSSSSSSVI 841 (938)
Q Consensus 768 ~~~~~~p~~~~-----~-l~~L~~L~L~~~~~~~~l~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~ 841 (938)
.+......|.. . ++++..+.+.+|.....+.+....|+|+.|.+..|+.++.+.+..-....+.. ..
T Consensus 728 ~~~e~~~~~~~~~~~~~~f~~l~~~~~~~~~~~r~l~~~~f~~~L~~l~l~~~~~~e~~i~~~k~~~~l~~-------~i 800 (889)
T KOG4658|consen 728 GISEIVIEWEESLIVLLCFPNLSKVSILNCHMLRDLTWLLFAPHLTSLSLVSCRLLEDIIPKLKALLELKE-------LI 800 (889)
T ss_pred CCchhhcccccccchhhhHHHHHHHHhhccccccccchhhccCcccEEEEecccccccCCCHHHHhhhccc-------EE
Confidence 88753222322 2 55666777777766666555667789999999998877665443322211111 12
Q ss_pred ccCCcccee-eccccccccccccccccccccccccccccceecccccccccCCCCCCCCCCCcCEEEEecC
Q 002308 842 IAFPKLKSL-SIFEMEELEEWDYGITRTGNTFINIMPRLSSLTINYCSKLKALPDHIHQTTTLKELRIGEC 911 (938)
Q Consensus 842 ~~~~~L~~L-~l~~~~~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c 911 (938)
..|+++..+ .+.+.+.+..+..... .+++|+.+.+..|+++..+|. +.++.+.+|
T Consensus 801 ~~f~~~~~l~~~~~l~~l~~i~~~~l--------~~~~l~~~~ve~~p~l~~~P~-------~~~~~i~~~ 856 (889)
T KOG4658|consen 801 LPFNKLEGLRMLCSLGGLPQLYWLPL--------SFLKLEELIVEECPKLGKLPL-------LSTLTIVGC 856 (889)
T ss_pred ecccccccceeeecCCCCceeEeccc--------CccchhheehhcCcccccCcc-------ccccceecc
Confidence 356666666 4555555554443221 456688888888887776663 444555555
No 28
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=99.22 E-value=9.1e-09 Score=113.61 Aligned_cols=303 Identities=12% Similarity=0.071 Sum_probs=172.3
Q ss_pred CCCceecchhhHHHHHHHHhccCcccCCCeEEEEEEccCCChHHHHHHHHhhhhhhh-ccc---CeEEEEEeCCCCCHHH
Q 002308 148 DEEEICGRVGERNALLSMLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNHVEVK-REF---DKTLWVCVSETFDEFR 223 (938)
Q Consensus 148 ~~~~~vGr~~~~~~l~~~l~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~v~~~~~~~-~~f---~~~~wv~~~~~~~~~~ 223 (938)
.|+.++||++++++|...+...-. +.....+.|+|++|+|||++++.+++..... ... -..+|+++....+...
T Consensus 13 ~p~~l~gRe~e~~~l~~~l~~~~~--~~~~~~i~I~G~~GtGKT~l~~~~~~~l~~~~~~~~~~~~~v~in~~~~~~~~~ 90 (365)
T TIGR02928 13 VPDRIVHRDEQIEELAKALRPILR--GSRPSNVFIYGKTGTGKTAVTKYVMKELEEAAEDRDVRVVTVYVNCQILDTLYQ 90 (365)
T ss_pred CCCCCCCcHHHHHHHHHHHHHHHc--CCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhccCCceEEEEEECCCCCCHHH
Confidence 346799999999999999875322 2344678999999999999999999853211 111 2467888877777888
Q ss_pred HHHHHHHHhc---CCCC-CCCcHHHHHHHHHHHhc--CceEEEEEecCCCCCccChhHHHHhhhC----CC--CCcEEEE
Q 002308 224 IAKAMLEALT---GSTS-NLNALQSLLISIDESIA--GKRFLLVLDDVWDGDYIKWEPFYRCLKK----GL--HGSKILI 291 (938)
Q Consensus 224 ~~~~i~~~l~---~~~~-~~~~~~~~~~~l~~~l~--~~~~LlVlDdv~~~~~~~~~~l~~~l~~----~~--~gs~ilv 291 (938)
++..|+.++. ...+ ......+....+.+.+. +++++||||+++......-..+...+.. .. ....+|.
T Consensus 91 ~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlvIDE~d~L~~~~~~~L~~l~~~~~~~~~~~~~v~lI~ 170 (365)
T TIGR02928 91 VLVELANQLRGSGEEVPTTGLSTSEVFRRLYKELNERGDSLIIVLDEIDYLVGDDDDLLYQLSRARSNGDLDNAKVGVIG 170 (365)
T ss_pred HHHHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEECchhhhccCCcHHHHhHhccccccCCCCCeEEEEE
Confidence 9999999984 2211 11233444555555553 5688999999976521111112222221 11 2234455
Q ss_pred EcCChhhhhhh----c---CCceEeCCCCChHHHHHHHHHhhcC-CCCCchhhHHHHHHHHHHHhcCCChhHHHHHHhhh
Q 002308 292 TTRKESIVSMM----R---STDIISIEELAEEECWVLFKRLAFF-GRSTEECEKLEQIGQRIARKCKGLPLAAKTMGSLM 363 (938)
Q Consensus 292 Ttr~~~v~~~~----~---~~~~~~l~~L~~~~~~~lf~~~~~~-~~~~~~~~~~~~~~~~i~~~~~g~Plai~~~~~~l 363 (938)
+|........+ . ....+.+.+.+.++..+++..++.. .......++..+...+++....|.|..+..+....
T Consensus 171 i~n~~~~~~~l~~~~~s~~~~~~i~f~p~~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd~R~al~~l~~a 250 (365)
T TIGR02928 171 ISNDLKFRENLDPRVKSSLCEEEIIFPPYDAEELRDILENRAEKAFYDGVLDDGVIPLCAALAAQEHGDARKAIDLLRVA 250 (365)
T ss_pred EECCcchHhhcCHHHhccCCcceeeeCCCCHHHHHHHHHHHHHhhccCCCCChhHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 55444322111 1 1246889999999999999988631 11111223333445566777778885543332211
Q ss_pred -----cCC---CCHHHHHHHHhccccccccccccchhhHHhhhccCChhHHHHHhHhccCC--CCcccChHHHHHHHH--
Q 002308 364 -----SSK---KTEEEWKRILNSDLWKVEEIEKGVLTPLWLSYNDLPSRVKRCFSYCAVFP--KDYNIKKDELITLWM-- 431 (938)
Q Consensus 364 -----~~~---~~~~~w~~~~~~~~~~~~~~~~~~~~~l~~sy~~L~~~~k~~f~~~~~fp--~~~~i~~~~li~~w~-- 431 (938)
... -+.+......... -.....-++..||.+.+..+..++..- .+..+....+...+-
T Consensus 251 ~~~a~~~~~~~it~~~v~~a~~~~----------~~~~~~~~i~~l~~~~~~~l~ai~~~~~~~~~~~~~~~~~~~y~~~ 320 (365)
T TIGR02928 251 GEIAEREGAERVTEDHVEKAQEKI----------EKDRLLELIRGLPTHSKLVLLAIANLAANDEDPFRTGEVYEVYKEV 320 (365)
T ss_pred HHHHHHcCCCCCCHHHHHHHHHHH----------HHHHHHHHHHcCCHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHH
Confidence 111 1233333222211 112234466788988887766665321 333455666555331
Q ss_pred HcCCCcchhccccchHHHHHHHHHHHHHhcccccccc
Q 002308 432 AQGYLSAEAAEQDEEMETIGEEYFGILASRSFFQEFK 468 (938)
Q Consensus 432 a~g~i~~~~~~~~~~~~~~~~~~~~~L~~~~ll~~~~ 468 (938)
++.+ .. ..........++..|...|++....
T Consensus 321 ~~~~-~~-----~~~~~~~~~~~l~~l~~~gli~~~~ 351 (365)
T TIGR02928 321 CEDI-GV-----DPLTQRRISDLLNELDMLGLVEAEE 351 (365)
T ss_pred HHhc-CC-----CCCcHHHHHHHHHHHHhcCCeEEEE
Confidence 1211 00 0122355667889999999998654
No 29
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=99.22 E-value=1.1e-09 Score=115.28 Aligned_cols=183 Identities=19% Similarity=0.139 Sum_probs=115.8
Q ss_pred CeEEEEEEccCCChHHHHHHHHhhhhhhhcccCeEEEEEeCCCCCHHHHHHHHHHHhcCCCCCCCcHHHHHHHHH----H
Q 002308 176 GLHIISIVGMGGIGKTTLAQLACNHVEVKREFDKTLWVCVSETFDEFRIAKAMLEALTGSTSNLNALQSLLISID----E 251 (938)
Q Consensus 176 ~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~----~ 251 (938)
+.+++.|+|++|+||||+++.+++.... ..+ .++|+ +....+..+++..++..++..... .........+. .
T Consensus 42 ~~~~~~l~G~~G~GKTtl~~~l~~~l~~-~~~-~~~~~-~~~~~~~~~~l~~i~~~lG~~~~~-~~~~~~~~~l~~~l~~ 117 (269)
T TIGR03015 42 REGFILITGEVGAGKTTLIRNLLKRLDQ-ERV-VAAKL-VNTRVDAEDLLRMVAADFGLETEG-RDKAALLRELEDFLIE 117 (269)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHhcCC-CCe-EEeee-eCCCCCHHHHHHHHHHHcCCCCCC-CCHHHHHHHHHHHHHH
Confidence 3468999999999999999999885321 111 12233 333457778899999888765432 22222233333 2
Q ss_pred -HhcCceEEEEEecCCCCCccChhHHHHhhhCC---CCCcEEEEEcCChhhhhhhc----------CCceEeCCCCChHH
Q 002308 252 -SIAGKRFLLVLDDVWDGDYIKWEPFYRCLKKG---LHGSKILITTRKESIVSMMR----------STDIISIEELAEEE 317 (938)
Q Consensus 252 -~l~~~~~LlVlDdv~~~~~~~~~~l~~~l~~~---~~gs~ilvTtr~~~v~~~~~----------~~~~~~l~~L~~~~ 317 (938)
...+++.++|+||++..+...++.+....... .....|++|.... ...... ....+.+.+++.+|
T Consensus 118 ~~~~~~~~vliiDe~~~l~~~~~~~l~~l~~~~~~~~~~~~vvl~g~~~-~~~~l~~~~~~~l~~r~~~~~~l~~l~~~e 196 (269)
T TIGR03015 118 QFAAGKRALLVVDEAQNLTPELLEELRMLSNFQTDNAKLLQIFLVGQPE-FRETLQSPQLQQLRQRIIASCHLGPLDREE 196 (269)
T ss_pred HHhCCCCeEEEEECcccCCHHHHHHHHHHhCcccCCCCeEEEEEcCCHH-HHHHHcCchhHHHHhheeeeeeCCCCCHHH
Confidence 23578899999999987655566554332211 2223455665432 221111 13467899999999
Q ss_pred HHHHHHHhhcCCCCCchhhHHHHHHHHHHHhcCCChhHHHHHHhhh
Q 002308 318 CWVLFKRLAFFGRSTEECEKLEQIGQRIARKCKGLPLAAKTMGSLM 363 (938)
Q Consensus 318 ~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~~~~~l 363 (938)
..+++...+..........-..+..+.|++.++|.|..+..++..+
T Consensus 197 ~~~~l~~~l~~~g~~~~~~~~~~~~~~i~~~s~G~p~~i~~l~~~~ 242 (269)
T TIGR03015 197 TREYIEHRLERAGNRDAPVFSEGAFDAIHRFSRGIPRLINILCDRL 242 (269)
T ss_pred HHHHHHHHHHHcCCCCCCCcCHHHHHHHHHHcCCcccHHHHHHHHH
Confidence 9999988764322111112234568899999999999999998776
No 30
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=99.17 E-value=1.4e-10 Score=119.55 Aligned_cols=195 Identities=22% Similarity=0.164 Sum_probs=102.5
Q ss_pred eecchhhHHHHHHHHhccCcccCCCeEEEEEEccCCChHHHHHHHHhhhhhhhcccCeEEEEEeCCCCCHHHHHHHH---
Q 002308 152 ICGRVGERNALLSMLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNHVEVKREFDKTLWVCVSETFDEFRIAKAM--- 228 (938)
Q Consensus 152 ~vGr~~~~~~l~~~l~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i--- 228 (938)
|+||++++++|.+++... ..+.+.|+|+.|+|||+|++++.+. .+..-..++|+......... .+..+
T Consensus 1 F~gR~~el~~l~~~l~~~------~~~~~~l~G~rg~GKTsLl~~~~~~--~~~~~~~~~y~~~~~~~~~~-~~~~~~~~ 71 (234)
T PF01637_consen 1 FFGREKELEKLKELLESG------PSQHILLYGPRGSGKTSLLKEFINE--LKEKGYKVVYIDFLEESNES-SLRSFIEE 71 (234)
T ss_dssp S-S-HHHHHHHHHCHHH--------SSEEEEEESTTSSHHHHHHHHHHH--CT--EECCCHHCCTTBSHHH-HHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhh------cCcEEEEEcCCcCCHHHHHHHHHHH--hhhcCCcEEEEecccchhhh-HHHHHHHH
Confidence 799999999999998743 3568999999999999999999984 32221244555544443222 22222
Q ss_pred -------HHHhc----CCCC------CCCcHHHHHHHHHHHhc--CceEEEEEecCCCCC------ccChhHHHHhhhC-
Q 002308 229 -------LEALT----GSTS------NLNALQSLLISIDESIA--GKRFLLVLDDVWDGD------YIKWEPFYRCLKK- 282 (938)
Q Consensus 229 -------~~~l~----~~~~------~~~~~~~~~~~l~~~l~--~~~~LlVlDdv~~~~------~~~~~~l~~~l~~- 282 (938)
...+. .... ...........+.+.+. +++++||+||+.... ..-...+...+..
T Consensus 72 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~iiviDe~~~~~~~~~~~~~~~~~l~~~~~~~ 151 (234)
T PF01637_consen 72 TSLADELSEALGISIPSITLEKISKDLSEDSFSALERLLEKLKKKGKKVIIVIDEFQYLAIASEEDKDFLKSLRSLLDSL 151 (234)
T ss_dssp HHHHCHCHHHHHHHCCTSTTEEEECTS-GG-G--HHHHHHHHHHCHCCEEEEEETGGGGGBCTTTTHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHhhhcccccchhhhhcchhhHHHHHHHHHHHHHhcCCcEEEEEecHHHHhhcccchHHHHHHHHHHHhhc
Confidence 11121 1110 11122222233333332 345999999996644 0112233344433
Q ss_pred -CCCCcEEEEEcCChhhhhh--------hcCCceEeCCCCChHHHHHHHHHhhcCCCCCchhhHHHHHHHHHHHhcCCCh
Q 002308 283 -GLHGSKILITTRKESIVSM--------MRSTDIISIEELAEEECWVLFKRLAFFGRSTEECEKLEQIGQRIARKCKGLP 353 (938)
Q Consensus 283 -~~~gs~ilvTtr~~~v~~~--------~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~P 353 (938)
......+|++......... .+....+.+++|+.+++++++...+... . .. +.-.+..++|+..+||+|
T Consensus 152 ~~~~~~~~v~~~S~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~e~~~~~~~~~~~~-~-~~-~~~~~~~~~i~~~~gG~P 228 (234)
T PF01637_consen 152 LSQQNVSIVITGSSDSLMEEFLDDKSPLFGRFSHIELKPLSKEEAREFLKELFKEL-I-KL-PFSDEDIEEIYSLTGGNP 228 (234)
T ss_dssp ---TTEEEEEEESSHHHHHHTT-TTSTTTT---EEEE----HHHHHHHHHHHHHCC---------HHHHHHHHHHHTT-H
T ss_pred cccCCceEEEECCchHHHHHhhcccCccccccceEEEeeCCHHHHHHHHHHHHHHh-h-cc-cCCHHHHHHHHHHhCCCH
Confidence 2233345555544444332 2334469999999999999999975433 1 11 122344689999999999
Q ss_pred hHHHH
Q 002308 354 LAAKT 358 (938)
Q Consensus 354 lai~~ 358 (938)
..|..
T Consensus 229 ~~l~~ 233 (234)
T PF01637_consen 229 RYLQE 233 (234)
T ss_dssp HHHHH
T ss_pred HHHhc
Confidence 98764
No 31
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=99.14 E-value=4.4e-09 Score=118.03 Aligned_cols=296 Identities=18% Similarity=0.184 Sum_probs=185.6
Q ss_pred CCCceecchhhHHHHHHHHhccCcccCCCeEEEEEEccCCChHHHHHHHHhhhhhhhcccCeEEEEEeCC-CCCHHHHHH
Q 002308 148 DEEEICGRVGERNALLSMLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNHVEVKREFDKTLWVCVSE-TFDEFRIAK 226 (938)
Q Consensus 148 ~~~~~vGr~~~~~~l~~~l~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~-~~~~~~~~~ 226 (938)
.+...|-|..- ...|.. ..+.+.+.|..++|.|||||+.+.+. +... =..+.|++..+ +.+......
T Consensus 17 ~~~~~v~R~rL----~~~L~~-----~~~~RL~li~APAGfGKttl~aq~~~--~~~~-~~~v~Wlslde~dndp~rF~~ 84 (894)
T COG2909 17 RPDNYVVRPRL----LDRLRR-----ANDYRLILISAPAGFGKTTLLAQWRE--LAAD-GAAVAWLSLDESDNDPARFLS 84 (894)
T ss_pred CcccccccHHH----HHHHhc-----CCCceEEEEeCCCCCcHHHHHHHHHH--hcCc-ccceeEeecCCccCCHHHHHH
Confidence 34556666554 444443 34789999999999999999999976 2222 25789999865 556778888
Q ss_pred HHHHHhcCCCCC-------------CCcHHHHHHHHHHHhc--CceEEEEEecCCCCCccChhH-HHHhhhCCCCCcEEE
Q 002308 227 AMLEALTGSTSN-------------LNALQSLLISIDESIA--GKRFLLVLDDVWDGDYIKWEP-FYRCLKKGLHGSKIL 290 (938)
Q Consensus 227 ~i~~~l~~~~~~-------------~~~~~~~~~~l~~~l~--~~~~LlVlDdv~~~~~~~~~~-l~~~l~~~~~gs~il 290 (938)
.++..+....+. ......+...+...+. .++..+||||........... +...+....++-.+|
T Consensus 85 yLi~al~~~~p~~~~~a~~l~q~~~~~~l~~l~~~L~~Ela~~~~pl~LVlDDyHli~~~~l~~~l~fLl~~~P~~l~lv 164 (894)
T COG2909 85 YLIAALQQATPTLGDEAQTLLQKHQYVSLESLLSSLLNELASYEGPLYLVLDDYHLISDPALHEALRFLLKHAPENLTLV 164 (894)
T ss_pred HHHHHHHHhCccccHHHHHHHHhcccccHHHHHHHHHHHHHhhcCceEEEeccccccCcccHHHHHHHHHHhCCCCeEEE
Confidence 888887633222 2233334444444443 468999999987655445444 444445567888999
Q ss_pred EEcCChhhh---hhhcCCceEeC----CCCChHHHHHHHHHhhcCCCCCchhhHHHHHHHHHHHhcCCChhHHHHHHhhh
Q 002308 291 ITTRKESIV---SMMRSTDIISI----EELAEEECWVLFKRLAFFGRSTEECEKLEQIGQRIARKCKGLPLAAKTMGSLM 363 (938)
Q Consensus 291 vTtr~~~v~---~~~~~~~~~~l----~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~~~~~l 363 (938)
||||+..-. ..--....+++ -.|+.+|+.++|.......-+. .-++.+.+..+|-+-|+..++-.+
T Consensus 165 v~SR~rP~l~la~lRlr~~llEi~~~~Lrf~~eE~~~fl~~~~~l~Ld~-------~~~~~L~~~teGW~~al~L~aLa~ 237 (894)
T COG2909 165 VTSRSRPQLGLARLRLRDELLEIGSEELRFDTEEAAAFLNDRGSLPLDA-------ADLKALYDRTEGWAAALQLIALAL 237 (894)
T ss_pred EEeccCCCCcccceeehhhHHhcChHhhcCChHHHHHHHHHcCCCCCCh-------HHHHHHHhhcccHHHHHHHHHHHc
Confidence 999986322 21111223333 4689999999999875222221 126789999999999999998887
Q ss_pred cCCCCHHHHHHHHhccccccccccccch-hhHHhhhccCChhHHHHHhHhccCCCCcccChHHHHHHHHHcCCCcchhcc
Q 002308 364 SSKKTEEEWKRILNSDLWKVEEIEKGVL-TPLWLSYNDLPSRVKRCFSYCAVFPKDYNIKKDELITLWMAQGYLSAEAAE 442 (938)
Q Consensus 364 ~~~~~~~~w~~~~~~~~~~~~~~~~~~~-~~l~~sy~~L~~~~k~~f~~~~~fp~~~~i~~~~li~~w~a~g~i~~~~~~ 442 (938)
+...+.+.-...+. ....-+. -...--++.||+++|..++-+|+++. +. ..|+..
T Consensus 238 ~~~~~~~q~~~~Ls-------G~~~~l~dYL~eeVld~Lp~~l~~FLl~~svl~~---f~-~eL~~~------------- 293 (894)
T COG2909 238 RNNTSAEQSLRGLS-------GAASHLSDYLVEEVLDRLPPELRDFLLQTSVLSR---FN-DELCNA------------- 293 (894)
T ss_pred cCCCcHHHHhhhcc-------chHHHHHHHHHHHHHhcCCHHHHHHHHHHHhHHH---hh-HHHHHH-------------
Confidence 73333322221111 0000111 12334578899999999999999854 11 122211
Q ss_pred ccchHHHHHHHHHHHHHhcccccccccCCCCceeEEEechhHHHHHHHh
Q 002308 443 QDEEMETIGEEYFGILASRSFFQEFKKSYDNRIIACKMHDMVHDLAQFV 491 (938)
Q Consensus 443 ~~~~~~~~~~~~~~~L~~~~ll~~~~~~~~~~~~~~~mhdlv~~~~~~~ 491 (938)
.+-++.+...+++|..++++-..-.+ ....|+.|.++.+|.+.-
T Consensus 294 --Ltg~~ng~amLe~L~~~gLFl~~Ldd---~~~WfryH~LFaeFL~~r 337 (894)
T COG2909 294 --LTGEENGQAMLEELERRGLFLQRLDD---EGQWFRYHHLFAEFLRQR 337 (894)
T ss_pred --HhcCCcHHHHHHHHHhCCCceeeecC---CCceeehhHHHHHHHHhh
Confidence 11223345568999999998643322 224689999999998754
No 32
>PF05729 NACHT: NACHT domain
Probab=99.09 E-value=1.2e-09 Score=105.90 Aligned_cols=144 Identities=21% Similarity=0.333 Sum_probs=91.7
Q ss_pred EEEEEEccCCChHHHHHHHHhhhhhhhcc----cCeEEEEEeCCCCCHH---HHHHHHHHHhcCCCCCCCcHHHHHHHHH
Q 002308 178 HIISIVGMGGIGKTTLAQLACNHVEVKRE----FDKTLWVCVSETFDEF---RIAKAMLEALTGSTSNLNALQSLLISID 250 (938)
Q Consensus 178 ~vv~i~G~~GiGKTtLa~~v~~~~~~~~~----f~~~~wv~~~~~~~~~---~~~~~i~~~l~~~~~~~~~~~~~~~~l~ 250 (938)
+++.|+|.+|+||||+++.++........ +..++|++........ .+...|..+....... ...... .
T Consensus 1 r~l~I~G~~G~GKStll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~---~~~~~~--~ 75 (166)
T PF05729_consen 1 RVLWISGEPGSGKSTLLRKLAQQLAEEEPPPSKFPYPFFFSLRDISDSNNSRSLADLLFDQLPESIAP---IEELLQ--E 75 (166)
T ss_pred CEEEEECCCCCChHHHHHHHHHHHHhcCcccccceEEEEEeehhhhhccccchHHHHHHHhhccchhh---hHHHHH--H
Confidence 57899999999999999999986443332 4467777766544332 3444444444322111 111111 1
Q ss_pred HHhcCceEEEEEecCCCCCcc-------ChhHHH-HhhhC-CCCCcEEEEEcCChhh---hhhhcCCceEeCCCCChHHH
Q 002308 251 ESIAGKRFLLVLDDVWDGDYI-------KWEPFY-RCLKK-GLHGSKILITTRKESI---VSMMRSTDIISIEELAEEEC 318 (938)
Q Consensus 251 ~~l~~~~~LlVlDdv~~~~~~-------~~~~l~-~~l~~-~~~gs~ilvTtr~~~v---~~~~~~~~~~~l~~L~~~~~ 318 (938)
-....++++||+|+++..... .+..+. ..++. ..++.+++||+|.... .........+++.+|++++.
T Consensus 76 ~~~~~~~~llilDglDE~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~liit~r~~~~~~~~~~~~~~~~~~l~~~~~~~~ 155 (166)
T PF05729_consen 76 LLEKNKRVLLILDGLDELEEQDQSQERQRLLDLLSQLLPQALPPGVKLIITSRPRAFPDLRRRLKQAQILELEPFSEEDI 155 (166)
T ss_pred HHHcCCceEEEEechHhcccchhhhHHHHHHHHHHHHhhhccCCCCeEEEEEcCChHHHHHHhcCCCcEEEECCCCHHHH
Confidence 122578999999999764321 122333 33333 3578999999998765 33334456899999999999
Q ss_pred HHHHHHhh
Q 002308 319 WVLFKRLA 326 (938)
Q Consensus 319 ~~lf~~~~ 326 (938)
.+++.++.
T Consensus 156 ~~~~~~~f 163 (166)
T PF05729_consen 156 KQYLRKYF 163 (166)
T ss_pred HHHHHHHh
Confidence 99998764
No 33
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=99.07 E-value=2.2e-09 Score=115.64 Aligned_cols=278 Identities=19% Similarity=0.171 Sum_probs=143.8
Q ss_pred CCceecchhhHHHHHHHHhccCcccCCCeEEEEEEccCCChHHHHHHHHhhhhhhhcccCeEEEEEeCCCCCHHHHHHHH
Q 002308 149 EEEICGRVGERNALLSMLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNHVEVKREFDKTLWVCVSETFDEFRIAKAM 228 (938)
Q Consensus 149 ~~~~vGr~~~~~~l~~~l~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i 228 (938)
-..|+|++...+.+..++...... ......+.|+|++|+|||++|+.+++.. ...+ .++... .......+..+
T Consensus 24 ~~~~vG~~~~~~~l~~~l~~~~~~-~~~~~~~ll~GppG~GKT~la~~ia~~l--~~~~---~~~~~~-~~~~~~~l~~~ 96 (328)
T PRK00080 24 LDEFIGQEKVKENLKIFIEAAKKR-GEALDHVLLYGPPGLGKTTLANIIANEM--GVNI---RITSGP-ALEKPGDLAAI 96 (328)
T ss_pred HHHhcCcHHHHHHHHHHHHHHHhc-CCCCCcEEEECCCCccHHHHHHHHHHHh--CCCe---EEEecc-cccChHHHHHH
Confidence 457999999999998888643211 2345678999999999999999999843 2222 122211 11111222233
Q ss_pred HHHhcCCCC-CCCcHH----HHHHHHHHHhcCceEEEEEecCCCCCccChhHHHHhhhCCCCCcEEEEEcCChhhhhhhc
Q 002308 229 LEALTGSTS-NLNALQ----SLLISIDESIAGKRFLLVLDDVWDGDYIKWEPFYRCLKKGLHGSKILITTRKESIVSMMR 303 (938)
Q Consensus 229 ~~~l~~~~~-~~~~~~----~~~~~l~~~l~~~~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtr~~~v~~~~~ 303 (938)
+..+..... -.++.+ .....+...+.+.+..+|+|+....... ...+ .+.+-|..|++...+.....
T Consensus 97 l~~l~~~~vl~IDEi~~l~~~~~e~l~~~~e~~~~~~~l~~~~~~~~~-----~~~l---~~~~li~at~~~~~l~~~L~ 168 (328)
T PRK00080 97 LTNLEEGDVLFIDEIHRLSPVVEEILYPAMEDFRLDIMIGKGPAARSI-----RLDL---PPFTLIGATTRAGLLTSPLR 168 (328)
T ss_pred HHhcccCCEEEEecHhhcchHHHHHHHHHHHhcceeeeeccCccccce-----eecC---CCceEEeecCCcccCCHHHH
Confidence 332221100 000000 1111222233333444444443221100 0001 12344556666544333221
Q ss_pred --CCceEeCCCCChHHHHHHHHHhhcCCCCCchhhHHHHHHHHHHHhcCCChhHHHHHHhhhcCCCCHHHHHHHHhcccc
Q 002308 304 --STDIISIEELAEEECWVLFKRLAFFGRSTEECEKLEQIGQRIARKCKGLPLAAKTMGSLMSSKKTEEEWKRILNSDLW 381 (938)
Q Consensus 304 --~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~~~~~l~~~~~~~~w~~~~~~~~~ 381 (938)
....+.+.+++.++..+++.+.+....... ..+.+..|++.|+|.|-.+..+...+. .|........
T Consensus 169 sRf~~~~~l~~~~~~e~~~il~~~~~~~~~~~----~~~~~~~ia~~~~G~pR~a~~~l~~~~------~~a~~~~~~~- 237 (328)
T PRK00080 169 DRFGIVQRLEFYTVEELEKIVKRSARILGVEI----DEEGALEIARRSRGTPRIANRLLRRVR------DFAQVKGDGV- 237 (328)
T ss_pred HhcCeeeecCCCCHHHHHHHHHHHHHHcCCCc----CHHHHHHHHHHcCCCchHHHHHHHHHH------HHHHHcCCCC-
Confidence 124689999999999999998876433322 224578999999999965555554321 2222111000
Q ss_pred ccccccccchhhHHhhhccCChhHHHHHh-HhccCCCCcccChHHHHHHHHHcCCCcchhccccchHHHHHHHHHH-HHH
Q 002308 382 KVEEIEKGVLTPLWLSYNDLPSRVKRCFS-YCAVFPKDYNIKKDELITLWMAQGYLSAEAAEQDEEMETIGEEYFG-ILA 459 (938)
Q Consensus 382 ~~~~~~~~~~~~l~~sy~~L~~~~k~~f~-~~~~fp~~~~i~~~~li~~w~a~g~i~~~~~~~~~~~~~~~~~~~~-~L~ 459 (938)
-....-......+...+..|++..+..+. ....|..+ .+..+.+.... | .+ ...++..++ .|+
T Consensus 238 I~~~~v~~~l~~~~~~~~~l~~~~~~~l~~~~~~~~~~-~~~~~~~a~~l---g-------~~----~~~~~~~~e~~Li 302 (328)
T PRK00080 238 ITKEIADKALDMLGVDELGLDEMDRKYLRTIIEKFGGG-PVGLDTLAAAL---G-------EE----RDTIEDVYEPYLI 302 (328)
T ss_pred CCHHHHHHHHHHhCCCcCCCCHHHHHHHHHHHHHcCCC-ceeHHHHHHHH---C-------CC----cchHHHHhhHHHH
Confidence 00011112334456677888888888775 55566554 45555543222 1 11 122333345 789
Q ss_pred hccccccc
Q 002308 460 SRSFFQEF 467 (938)
Q Consensus 460 ~~~ll~~~ 467 (938)
+.+|++..
T Consensus 303 ~~~li~~~ 310 (328)
T PRK00080 303 QQGFIQRT 310 (328)
T ss_pred HcCCcccC
Confidence 99999643
No 34
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=99.02 E-value=4.3e-09 Score=112.84 Aligned_cols=275 Identities=18% Similarity=0.124 Sum_probs=141.0
Q ss_pred CceecchhhHHHHHHHHhccCcccCCCeEEEEEEccCCChHHHHHHHHhhhhhhhcccCeEEEEEeCCCCCHHHHHHHHH
Q 002308 150 EEICGRVGERNALLSMLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNHVEVKREFDKTLWVCVSETFDEFRIAKAML 229 (938)
Q Consensus 150 ~~~vGr~~~~~~l~~~l~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 229 (938)
..|+|++..++++..++...... ......+.++|++|+|||+||+.+++. ....+ ..+.......... +...+
T Consensus 4 ~~~iG~~~~~~~l~~~l~~~~~~-~~~~~~~ll~Gp~G~GKT~la~~ia~~--~~~~~---~~~~~~~~~~~~~-l~~~l 76 (305)
T TIGR00635 4 AEFIGQEKVKEQLQLFIEAAKMR-QEALDHLLLYGPPGLGKTTLAHIIANE--MGVNL---KITSGPALEKPGD-LAAIL 76 (305)
T ss_pred HHHcCHHHHHHHHHHHHHHHHhc-CCCCCeEEEECCCCCCHHHHHHHHHHH--hCCCE---EEeccchhcCchh-HHHHH
Confidence 46999999999999988643221 123456889999999999999999884 32222 1122111111111 22222
Q ss_pred HHhcCCCC-CCCcH----HHHHHHHHHHhcCceEEEEEecCCCCCccChhHHHHhhhCCCCCcEEEEEcCChhhhhhhc-
Q 002308 230 EALTGSTS-NLNAL----QSLLISIDESIAGKRFLLVLDDVWDGDYIKWEPFYRCLKKGLHGSKILITTRKESIVSMMR- 303 (938)
Q Consensus 230 ~~l~~~~~-~~~~~----~~~~~~l~~~l~~~~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtr~~~v~~~~~- 303 (938)
..+..... -.++. ......+...+.+.+..+|+|+...... +. .. ..+.+-|..||+...+.....
T Consensus 77 ~~~~~~~vl~iDEi~~l~~~~~e~l~~~~~~~~~~~v~~~~~~~~~--~~---~~---~~~~~li~~t~~~~~l~~~l~s 148 (305)
T TIGR00635 77 TNLEEGDVLFIDEIHRLSPAVEELLYPAMEDFRLDIVIGKGPSARS--VR---LD---LPPFTLVGATTRAGMLTSPLRD 148 (305)
T ss_pred HhcccCCEEEEehHhhhCHHHHHHhhHHHhhhheeeeeccCccccc--ee---ec---CCCeEEEEecCCccccCHHHHh
Confidence 22221100 00000 1112223333444444455554432210 00 01 112445556777644433221
Q ss_pred -CCceEeCCCCChHHHHHHHHHhhcCCCCCchhhHHHHHHHHHHHhcCCChhHHHHHHhhhcCCCCHHHHHHHHhccccc
Q 002308 304 -STDIISIEELAEEECWVLFKRLAFFGRSTEECEKLEQIGQRIARKCKGLPLAAKTMGSLMSSKKTEEEWKRILNSDLWK 382 (938)
Q Consensus 304 -~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~~~~~l~~~~~~~~w~~~~~~~~~~ 382 (938)
....+.+.+++.++..+++.+.+....... ..+....|++.|+|.|-.+..++..+ |..........
T Consensus 149 R~~~~~~l~~l~~~e~~~il~~~~~~~~~~~----~~~al~~ia~~~~G~pR~~~~ll~~~--------~~~a~~~~~~~ 216 (305)
T TIGR00635 149 RFGIILRLEFYTVEELAEIVSRSAGLLNVEI----EPEAALEIARRSRGTPRIANRLLRRV--------RDFAQVRGQKI 216 (305)
T ss_pred hcceEEEeCCCCHHHHHHHHHHHHHHhCCCc----CHHHHHHHHHHhCCCcchHHHHHHHH--------HHHHHHcCCCC
Confidence 134678999999999999998875433222 13346789999999997765555432 11110000000
Q ss_pred c-ccccccchhhHHhhhccCChhHHHHHh-HhccCCCCcccChHHHHHHHHHcCCCcchhccccchHHHHHHHHHH-HHH
Q 002308 383 V-EEIEKGVLTPLWLSYNDLPSRVKRCFS-YCAVFPKDYNIKKDELITLWMAQGYLSAEAAEQDEEMETIGEEYFG-ILA 459 (938)
Q Consensus 383 ~-~~~~~~~~~~l~~sy~~L~~~~k~~f~-~~~~fp~~~~i~~~~li~~w~a~g~i~~~~~~~~~~~~~~~~~~~~-~L~ 459 (938)
. .+........+...|..++...+..+. .+..+..+ .+..+.+.... | . ....++..++ .|+
T Consensus 217 it~~~v~~~l~~l~~~~~~l~~~~~~~L~al~~~~~~~-~~~~~~ia~~l---g-------~----~~~~~~~~~e~~Li 281 (305)
T TIGR00635 217 INRDIALKALEMLMIDELGLDEIDRKLLSVLIEQFQGG-PVGLKTLAAAL---G-------E----DADTIEDVYEPYLL 281 (305)
T ss_pred cCHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHhCCC-cccHHHHHHHh---C-------C----CcchHHHhhhHHHH
Confidence 0 000011222255667888888777666 44566433 44444332221 1 1 1123344466 699
Q ss_pred hcccccc
Q 002308 460 SRSFFQE 466 (938)
Q Consensus 460 ~~~ll~~ 466 (938)
+.+++..
T Consensus 282 ~~~li~~ 288 (305)
T TIGR00635 282 QIGFLQR 288 (305)
T ss_pred HcCCccc
Confidence 9999964
No 35
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.00 E-value=5.7e-11 Score=119.00 Aligned_cols=242 Identities=21% Similarity=0.113 Sum_probs=151.4
Q ss_pred hccCCCeeEEecCCCCCCcc----cCccccccCCCCeeeecCCcc----ccccc-------cccCCCCccEEEcCCCCCc
Q 002308 564 FRESTSLRALDFPSFYLPLE----IPRNIEKLVHLRYLNLSDQKI----KKLPE-------TLCELYNLEKLDISGCSDL 628 (938)
Q Consensus 564 ~~~~~~Lr~L~L~~n~~~~~----lp~~~~~l~~L~~L~L~~~~i----~~lp~-------~i~~l~~L~~L~l~~~~~l 628 (938)
...+..+..|+|++|.+... +.+.+.+.++|+.-++++-.. ..+|+ .+-.+++|++||||.|-+-
T Consensus 26 ~~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G 105 (382)
T KOG1909|consen 26 LEPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFG 105 (382)
T ss_pred hcccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccC
Confidence 34455555555555553221 223344444555555554221 12332 2334556666666666543
Q ss_pred cccccc----ccccCccceeecCCCccccc-------------CCccCCCCCCCcccCeeEecCCCCCCCCccccccccc
Q 002308 629 RELPKG----IGKLINMKHLLNSGTRSLRY-------------MPVGIGRLTGLRTLGEFHVSAGGGVDGSKACRLESLK 691 (938)
Q Consensus 629 ~~lp~~----i~~l~~L~~L~l~~~~~~~~-------------~p~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~l~ 691 (938)
..-+.. +.++.+|+||+|.+|.+... ....++.-+.|+++....|.+.+.....+...+...+
T Consensus 106 ~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ga~~~A~~~~~~~ 185 (382)
T KOG1909|consen 106 PKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGGATALAEAFQSHP 185 (382)
T ss_pred ccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccccHHHHHHHHHhcc
Confidence 332222 34456677777766643321 1122455678899988888877654444444566778
Q ss_pred ccccCcceeecCcCCCCChhhhhhhhccCCCcCCceEEEEecCCCCCCCCCccchHHHHhhCCCCCCCCeEEEeeecCCC
Q 002308 692 NLEHLQVCCIRRLGDVSDVGEAKLLELDKKKYLSRLRLEFDKKGGGGGRRKNEDDQLLLEALQPPLNLKELEIHYYGGNT 771 (938)
Q Consensus 692 ~L~~L~l~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~ 771 (938)
.|+.+++..|.+... ...+....+..+++|+.|+|..|.++. .....+...+..+++|+.|++++|.+..
T Consensus 186 ~leevr~~qN~I~~e---G~~al~eal~~~~~LevLdl~DNtft~-------egs~~LakaL~s~~~L~El~l~dcll~~ 255 (382)
T KOG1909|consen 186 TLEEVRLSQNGIRPE---GVTALAEALEHCPHLEVLDLRDNTFTL-------EGSVALAKALSSWPHLRELNLGDCLLEN 255 (382)
T ss_pred ccceEEEecccccCc---hhHHHHHHHHhCCcceeeecccchhhh-------HHHHHHHHHhcccchheeeccccccccc
Confidence 888888877765422 223555678899999999999998764 2345567788888999999999998876
Q ss_pred CCCCc----hh-ccCCCCEEEEecCCCCCcC-----CCCCCCCccceeeccccc
Q 002308 772 VFPSW----MA-SLTNLKSLDLCFCENCEQL-----PPLGKLPSLEQLFISYMS 815 (938)
Q Consensus 772 ~~p~~----~~-~l~~L~~L~L~~~~~~~~l-----~~l~~l~~L~~L~L~~~~ 815 (938)
.-... +. ..|+|+.|.|.+|.+...- ......|.|..|+|++|+
T Consensus 256 ~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~ 309 (382)
T KOG1909|consen 256 EGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNR 309 (382)
T ss_pred ccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCccc
Confidence 32211 21 5789999999999875431 125678999999999998
No 36
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=98.96 E-value=8.3e-08 Score=108.75 Aligned_cols=213 Identities=10% Similarity=0.045 Sum_probs=129.1
Q ss_pred CCceecchhhHHHHHHHHhccCcccCCCeEEEEEEccCCChHHHHHHHHhhhhhh---hcccC--eEEEEEeCCCCCHHH
Q 002308 149 EEEICGRVGERNALLSMLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNHVEV---KREFD--KTLWVCVSETFDEFR 223 (938)
Q Consensus 149 ~~~~vGr~~~~~~l~~~l~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~v~~~~~~---~~~f~--~~~wv~~~~~~~~~~ 223 (938)
|+.+.||++|+++|...|...-.. .....++.|+|++|+|||+.++.|...... +.... .+++|++..-.+...
T Consensus 754 PD~LPhREeEIeeLasfL~paIkg-sgpnnvLYIyG~PGTGKTATVK~VLrELqeeaeqk~lp~f~vVYINCm~Lstp~s 832 (1164)
T PTZ00112 754 PKYLPCREKEIKEVHGFLESGIKQ-SGSNQILYISGMPGTGKTATVYSVIQLLQHKTKQKLLPSFNVFEINGMNVVHPNA 832 (1164)
T ss_pred CCcCCChHHHHHHHHHHHHHHHhc-CCCCceEEEECCCCCCHHHHHHHHHHHHHHHHhhccCCCceEEEEeCCccCCHHH
Confidence 567899999999999988754321 223467889999999999999999875321 11122 367788877778889
Q ss_pred HHHHHHHHhcCCCCC-CCcHHHHHHHHHHHhc---CceEEEEEecCCCCCccChhHHHHhhhC-CCCCcEEEE--EcCCh
Q 002308 224 IAKAMLEALTGSTSN-LNALQSLLISIDESIA---GKRFLLVLDDVWDGDYIKWEPFYRCLKK-GLHGSKILI--TTRKE 296 (938)
Q Consensus 224 ~~~~i~~~l~~~~~~-~~~~~~~~~~l~~~l~---~~~~LlVlDdv~~~~~~~~~~l~~~l~~-~~~gs~ilv--Ttr~~ 296 (938)
++..|++++....+. .....+....+...+. +...+||||+++......-+.+...+.+ ...+++|+| +|...
T Consensus 833 IYqvI~qqL~g~~P~~GlsS~evLerLF~~L~k~~r~v~IIILDEID~L~kK~QDVLYnLFR~~~~s~SKLiLIGISNdl 912 (1164)
T PTZ00112 833 AYQVLYKQLFNKKPPNALNSFKILDRLFNQNKKDNRNVSILIIDEIDYLITKTQKVLFTLFDWPTKINSKLVLIAISNTM 912 (1164)
T ss_pred HHHHHHHHHcCCCCCccccHHHHHHHHHhhhhcccccceEEEeehHhhhCccHHHHHHHHHHHhhccCCeEEEEEecCch
Confidence 999999998543322 2222333344444332 2345999999975432222334444443 234556554 33221
Q ss_pred h--------hhhhhcCCceEeCCCCChHHHHHHHHHhhcCCCCCchhhHHHHHHHHHHHhcCCChhHHHHHHhhh
Q 002308 297 S--------IVSMMRSTDIISIEELAEEECWVLFKRLAFFGRSTEECEKLEQIGQRIARKCKGLPLAAKTMGSLM 363 (938)
Q Consensus 297 ~--------v~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~~~~~l 363 (938)
+ +...++ ...+...|.+.++..+++..++........+..++-+|+.++...|-.-.|+.++-.+.
T Consensus 913 DLperLdPRLRSRLg-~eeIvF~PYTaEQL~dILk~RAe~A~gVLdDdAIELIArkVAq~SGDARKALDILRrAg 986 (1164)
T PTZ00112 913 DLPERLIPRCRSRLA-FGRLVFSPYKGDEIEKIIKERLENCKEIIDHTAIQLCARKVANVSGDIRKALQICRKAF 986 (1164)
T ss_pred hcchhhhhhhhhccc-cccccCCCCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHhhhhcCCHHHHHHHHHHHHH
Confidence 1 111122 22466799999999999999876432223344555555555555555556665554443
No 37
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.89 E-value=1.8e-10 Score=118.59 Aligned_cols=139 Identities=23% Similarity=0.179 Sum_probs=85.3
Q ss_pred CcCCceEEEEecCCCCCCCCCccchHHHHhhCCCCCCCCeEEEeeecCCCCCCCchhccCCCCEEEEecCCCCCc--CCC
Q 002308 722 KYLSRLRLEFDKKGGGGGRRKNEDDQLLLEALQPPLNLKELEIHYYGGNTVFPSWMASLTNLKSLDLCFCENCEQ--LPP 799 (938)
Q Consensus 722 ~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~--l~~ 799 (938)
++|+.|.|+.|.++. ..+...+..+|+|+.|.+.+|............+..|+.|+|++|.+.+. .+.
T Consensus 197 ~~lK~L~l~~CGls~----------k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~ 266 (505)
T KOG3207|consen 197 SHLKQLVLNSCGLSW----------KDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYK 266 (505)
T ss_pred hhhheEEeccCCCCH----------HHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccc
Confidence 355566666665543 44555666778888888888852221222334577899999999976653 355
Q ss_pred CCCCCccceeecccccCceEeCcccccCCCCCCCCCCCCcccccCCccceeecccccccccccccccccccccccccccc
Q 002308 800 LGKLPSLEQLFISYMSSVKRVGDEFLGVESDRHDSSSSSSVIIAFPKLKSLSIFEMEELEEWDYGITRTGNTFINIMPRL 879 (938)
Q Consensus 800 l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~~~~~~~~~~~~~~~~l~~L 879 (938)
.+.+|.|..|+++.|. +..+. +.... +......||+|++|.+..++ ..+|..-.. +..+++|
T Consensus 267 ~~~l~~L~~Lnls~tg-i~si~--~~d~~--------s~~kt~~f~kL~~L~i~~N~-I~~w~sl~~------l~~l~nl 328 (505)
T KOG3207|consen 267 VGTLPGLNQLNLSSTG-IASIA--EPDVE--------SLDKTHTFPKLEYLNISENN-IRDWRSLNH------LRTLENL 328 (505)
T ss_pred cccccchhhhhccccC-cchhc--CCCcc--------chhhhcccccceeeecccCc-cccccccch------hhccchh
Confidence 8999999999998876 33331 11111 11113478899999888764 333332111 1257788
Q ss_pred ceecccccc
Q 002308 880 SSLTINYCS 888 (938)
Q Consensus 880 ~~L~l~~c~ 888 (938)
+.|.+..++
T Consensus 329 k~l~~~~n~ 337 (505)
T KOG3207|consen 329 KHLRITLNY 337 (505)
T ss_pred hhhhccccc
Confidence 888877644
No 38
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.88 E-value=4.4e-11 Score=119.78 Aligned_cols=258 Identities=19% Similarity=0.149 Sum_probs=153.6
Q ss_pred cccccCCCCeeeecCCccc-----cccccccCCCCccEEEcCCCC---Cccccccc-------ccccCccceeecCCCcc
Q 002308 587 NIEKLVHLRYLNLSDQKIK-----KLPETLCELYNLEKLDISGCS---DLRELPKG-------IGKLINMKHLLNSGTRS 651 (938)
Q Consensus 587 ~~~~l~~L~~L~L~~~~i~-----~lp~~i~~l~~L~~L~l~~~~---~l~~lp~~-------i~~l~~L~~L~l~~~~~ 651 (938)
.+..+..+++|+|++|.+. .+.+.+.+.++|+.-++++-- ....+|+. +...++|+.|+||.|-+
T Consensus 25 ~~~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~ 104 (382)
T KOG1909|consen 25 ELEPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAF 104 (382)
T ss_pred HhcccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeecccccc
Confidence 3556778999999999886 455667788888888888632 11234433 33456777777777755
Q ss_pred cccCCcc----CCCCCCCcccCeeEecCCCCCCCCcccccccccccccCcceeecCcCCCCChhhhhhhhccCCCcCCce
Q 002308 652 LRYMPVG----IGRLTGLRTLGEFHVSAGGGVDGSKACRLESLKNLEHLQVCCIRRLGDVSDVGEAKLLELDKKKYLSRL 727 (938)
Q Consensus 652 ~~~~p~~----l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~~~~L~~L 727 (938)
...-++. +.+++.|+.|.+.+|.+....... ++ ..|..|. ........++|+++
T Consensus 105 G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~----l~--~al~~l~----------------~~kk~~~~~~Lrv~ 162 (382)
T KOG1909|consen 105 GPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGR----LG--RALFELA----------------VNKKAASKPKLRVF 162 (382)
T ss_pred CccchHHHHHHHHhccCHHHHhhhcCCCChhHHHH----HH--HHHHHHH----------------HHhccCCCcceEEE
Confidence 4443333 234555666665555443211100 00 0011110 11234456789999
Q ss_pred EEEEecCCCCCCCCCccchHHHHhhCCCCCCCCeEEEeeecCCCC----CCCchhccCCCCEEEEecCCCCCc----CCC
Q 002308 728 RLEFDKKGGGGGRRKNEDDQLLLEALQPPLNLKELEIHYYGGNTV----FPSWMASLTNLKSLDLCFCENCEQ----LPP 799 (938)
Q Consensus 728 ~L~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~----~p~~~~~l~~L~~L~L~~~~~~~~----l~~ 799 (938)
..+.|+..+ .....+...++.++.|+.+.++.|.+... +...+..+++|+.|||.+|.+... +..
T Consensus 163 i~~rNrlen-------~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~Lak 235 (382)
T KOG1909|consen 163 ICGRNRLEN-------GGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAK 235 (382)
T ss_pred Eeecccccc-------ccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHH
Confidence 999998764 23455677888889999999999987642 122345899999999999976542 222
Q ss_pred -CCCCCccceeecccccCceEeCcccccCCCCCCCCCCCCcccccCCccceeeccccccccccccccccccccccccccc
Q 002308 800 -LGKLPSLEQLFISYMSSVKRVGDEFLGVESDRHDSSSSSSVIIAFPKLKSLSIFEMEELEEWDYGITRTGNTFINIMPR 878 (938)
Q Consensus 800 -l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~~~~~~~~~~~~~~~~l~~ 878 (938)
+..+|+|+.|++++|. ++.-+..-+. +.+..++|+|+.|.+.++.-=.+ ............|.
T Consensus 236 aL~s~~~L~El~l~dcl-l~~~Ga~a~~-----------~al~~~~p~L~vl~l~gNeIt~d----a~~~la~~~~ek~d 299 (382)
T KOG1909|consen 236 ALSSWPHLRELNLGDCL-LENEGAIAFV-----------DALKESAPSLEVLELAGNEITRD----AALALAACMAEKPD 299 (382)
T ss_pred Hhcccchheeecccccc-cccccHHHHH-----------HHHhccCCCCceeccCcchhHHH----HHHHHHHHHhcchh
Confidence 6778899999999986 4332221110 11123578888888776531000 00000111124788
Q ss_pred cceeccccccc
Q 002308 879 LSSLTINYCSK 889 (938)
Q Consensus 879 L~~L~l~~c~~ 889 (938)
|++|+|++|..
T Consensus 300 L~kLnLngN~l 310 (382)
T KOG1909|consen 300 LEKLNLNGNRL 310 (382)
T ss_pred hHHhcCCcccc
Confidence 88888888653
No 39
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.87 E-value=7.7e-11 Score=124.99 Aligned_cols=110 Identities=32% Similarity=0.417 Sum_probs=83.8
Q ss_pred hccCCCeeEEecCCCCCCcccCccccccCCCCeeeecCCccccccccccCCCCccEEEcCCCCCcccccccccccCccce
Q 002308 564 FRESTSLRALDFPSFYLPLEIPRNIEKLVHLRYLNLSDQKIKKLPETLCELYNLEKLDISGCSDLRELPKGIGKLINMKH 643 (938)
Q Consensus 564 ~~~~~~Lr~L~L~~n~~~~~lp~~~~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~l~~~~~l~~lp~~i~~l~~L~~ 643 (938)
+..|-.|..|.|+.|. +..+|..++++..|.||+|+.|.+..+|..++.|+ |+.|-+++|+ +..+|..++.+.+|.+
T Consensus 94 ~~~f~~Le~liLy~n~-~r~ip~~i~~L~~lt~l~ls~NqlS~lp~~lC~lp-Lkvli~sNNk-l~~lp~~ig~~~tl~~ 170 (722)
T KOG0532|consen 94 ACAFVSLESLILYHNC-IRTIPEAICNLEALTFLDLSSNQLSHLPDGLCDLP-LKVLIVSNNK-LTSLPEEIGLLPTLAH 170 (722)
T ss_pred HHHHHHHHHHHHHhcc-ceecchhhhhhhHHHHhhhccchhhcCChhhhcCc-ceeEEEecCc-cccCCcccccchhHHH
Confidence 5556677777888777 66678888888888888888888888888887776 7888888877 7778888887788888
Q ss_pred eecCCCcccccCCccCCCCCCCcccCeeEecCCC
Q 002308 644 LLNSGTRSLRYMPVGIGRLTGLRTLGEFHVSAGG 677 (938)
Q Consensus 644 L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~~~~ 677 (938)
|+.+.| .+..+|..++.+.+|+.|.+..|....
T Consensus 171 ld~s~n-ei~slpsql~~l~slr~l~vrRn~l~~ 203 (722)
T KOG0532|consen 171 LDVSKN-EIQSLPSQLGYLTSLRDLNVRRNHLED 203 (722)
T ss_pred hhhhhh-hhhhchHHhhhHHHHHHHHHhhhhhhh
Confidence 888877 344667777777777777777666544
No 40
>PRK06893 DNA replication initiation factor; Validated
Probab=98.85 E-value=7.5e-08 Score=97.58 Aligned_cols=155 Identities=17% Similarity=0.227 Sum_probs=96.5
Q ss_pred eEEEEEEccCCChHHHHHHHHhhhhhhhcccCeEEEEEeCCCCCHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHhcCc
Q 002308 177 LHIISIVGMGGIGKTTLAQLACNHVEVKREFDKTLWVCVSETFDEFRIAKAMLEALTGSTSNLNALQSLLISIDESIAGK 256 (938)
Q Consensus 177 ~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~ 256 (938)
.+.+.|+|++|+|||+|++.+++. .......+.|+.+... ...... +.+.+. +
T Consensus 39 ~~~l~l~G~~G~GKThL~~ai~~~--~~~~~~~~~y~~~~~~---~~~~~~---------------------~~~~~~-~ 91 (229)
T PRK06893 39 QPFFYIWGGKSSGKSHLLKAVSNH--YLLNQRTAIYIPLSKS---QYFSPA---------------------VLENLE-Q 91 (229)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH--HHHcCCCeEEeeHHHh---hhhhHH---------------------HHhhcc-c
Confidence 356899999999999999999995 3323345667765421 000011 111112 2
Q ss_pred eEEEEEecCCCCC-ccChhH-HHHhhhCC-CCCcEEE-EEcCC---------hhhhhhhcCCceEeCCCCChHHHHHHHH
Q 002308 257 RFLLVLDDVWDGD-YIKWEP-FYRCLKKG-LHGSKIL-ITTRK---------ESIVSMMRSTDIISIEELAEEECWVLFK 323 (938)
Q Consensus 257 ~~LlVlDdv~~~~-~~~~~~-l~~~l~~~-~~gs~il-vTtr~---------~~v~~~~~~~~~~~l~~L~~~~~~~lf~ 323 (938)
.-+||+||+|... ...|+. +...+... ..|..+| +|++. +++...+.....+++++++.++.++++.
T Consensus 92 ~dlLilDDi~~~~~~~~~~~~l~~l~n~~~~~~~~illits~~~p~~l~~~~~~L~sRl~~g~~~~l~~pd~e~~~~iL~ 171 (229)
T PRK06893 92 QDLVCLDDLQAVIGNEEWELAIFDLFNRIKEQGKTLLLISADCSPHALSIKLPDLASRLTWGEIYQLNDLTDEQKIIVLQ 171 (229)
T ss_pred CCEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCcEEEEeCCCChHHccccchhHHHHHhcCCeeeCCCCCHHHHHHHHH
Confidence 3489999998642 234553 44444432 2455554 45544 3555555666789999999999999999
Q ss_pred HhhcCCCCCchhhHHHHHHHHHHHhcCCChhHHHHHHhh
Q 002308 324 RLAFFGRSTEECEKLEQIGQRIARKCKGLPLAAKTMGSL 362 (938)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~~~~~ 362 (938)
+.+...+... -+++.+-|++.+.|..-.+..+-..
T Consensus 172 ~~a~~~~l~l----~~~v~~~L~~~~~~d~r~l~~~l~~ 206 (229)
T PRK06893 172 RNAYQRGIEL----SDEVANFLLKRLDRDMHTLFDALDL 206 (229)
T ss_pred HHHHHcCCCC----CHHHHHHHHHhccCCHHHHHHHHHH
Confidence 9886443222 2344678888888777666554443
No 41
>COG3899 Predicted ATPase [General function prediction only]
Probab=98.85 E-value=8.9e-08 Score=114.55 Aligned_cols=265 Identities=16% Similarity=0.166 Sum_probs=158.1
Q ss_pred eecchhhHHHHHHHHhccCcccCCCeEEEEEEccCCChHHHHHHHHhhhhhhhcccCeEEEEEeC---CCCCH---HHHH
Q 002308 152 ICGRVGERNALLSMLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNHVEVKREFDKTLWVCVS---ETFDE---FRIA 225 (938)
Q Consensus 152 ~vGr~~~~~~l~~~l~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~---~~~~~---~~~~ 225 (938)
++||+.+++.+...+.... .....++.+.|..|||||+|+++|... +.+.+...+--.+. .+... ...+
T Consensus 2 l~GRe~ev~~Ll~~f~~v~---~g~~~~~lv~G~sGIGKsalv~ev~~~--i~~~~~~~i~~~f~q~~~~ipl~~lvq~~ 76 (849)
T COG3899 2 LYGRETELAQLLAAFDRVS---KGRGEVVLVAGESGIGKSALVNEVHKP--ITQQRGYFIKGKFDQFERNIPLSPLVQAF 76 (849)
T ss_pred CCchHhHHHHHHHHHHHHh---CCCeEEEEEeecCCCcHHHHHHHHHHH--HhccceeeeHhhcccccCCCchHHHHHHH
Confidence 7899999999999998765 346679999999999999999999984 44332222211111 11111 2223
Q ss_pred HHHHHHh-------------------cCCC--------------C---C-----CCcHHH-----HHHHHHHHh-cCceE
Q 002308 226 KAMLEAL-------------------TGST--------------S---N-----LNALQS-----LLISIDESI-AGKRF 258 (938)
Q Consensus 226 ~~i~~~l-------------------~~~~--------------~---~-----~~~~~~-----~~~~l~~~l-~~~~~ 258 (938)
+++..++ +... . . ....+. ....+.... +.++.
T Consensus 77 r~l~~~ll~~~~~~~~~~~~~il~~~g~~~~~~~~vip~L~~i~g~~~~~~el~~~~~~~r~n~~~~~~i~~~~~~~~pl 156 (849)
T COG3899 77 RDLMGQLLSESDTRILSWRARLLAALGENGQVIIDVIPELELIIGKRPPALELSPTAAQNRFNLAFLRFIQVFTAEEHPL 156 (849)
T ss_pred HHHHHHHhhccchHHHHHHHHHHHHhcccchhHHhhhHHHHhhcCCCcchhhcccchhHHHHHHHHHHHHHHHHhccCCe
Confidence 3333332 1100 0 0 000011 112222222 35699
Q ss_pred EEEEecCCCCCccChhHHHHhhhCCCC----CcEE--EEEcCCh--hhhhhhcCCceEeCCCCChHHHHHHHHHhhcCCC
Q 002308 259 LLVLDDVWDGDYIKWEPFYRCLKKGLH----GSKI--LITTRKE--SIVSMMRSTDIISIEELAEEECWVLFKRLAFFGR 330 (938)
Q Consensus 259 LlVlDdv~~~~~~~~~~l~~~l~~~~~----gs~i--lvTtr~~--~v~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~ 330 (938)
++|+||+.+.|....+.+......... ...| +.|.+.. .+.........+.+.||+..+...+.........
T Consensus 157 Vi~leDlhWaD~~SL~lL~~lm~~~~~~~~~~n~v~~~h~~~~~~~~~~~~~~~i~~I~L~PL~~~d~~~lV~~~l~~~~ 236 (849)
T COG3899 157 VIVLEDLHWADSASLKLLQLLMDRIAIGAYRDNEVLLLHPLRPTLGEILKSATNITTITLAPLSRADTNQLVAATLGCTK 236 (849)
T ss_pred EEEEecccccChhHHHHHHHHHHhcchhhhhccccccCCCccchhhHHhhcCCceeEEecCcCchhhHHHHHHHHhCCcc
Confidence 999999988776655555444433221 1122 2333332 1222223356899999999999999998764322
Q ss_pred CCchhhHHHHHHHHHHHhcCCChhHHHHHHhhhcCCC------CHHHHHHHHhccccccccccccchhhHHhhhccCChh
Q 002308 331 STEECEKLEQIGQRIARKCKGLPLAAKTMGSLMSSKK------TEEEWKRILNSDLWKVEEIEKGVLTPLWLSYNDLPSR 404 (938)
Q Consensus 331 ~~~~~~~~~~~~~~i~~~~~g~Plai~~~~~~l~~~~------~~~~w~~~~~~~~~~~~~~~~~~~~~l~~sy~~L~~~ 404 (938)
. ...+....|+++..|+|+.+..+...+.... +...|..=... ....... +.+...+..-.+.||..
T Consensus 237 ~-----~~~p~~~~i~~kt~GnPfFi~e~lk~l~~~~~i~f~~~~~~w~~~~~~-i~~~~~~-~~vv~~l~~rl~kL~~~ 309 (849)
T COG3899 237 L-----LPAPLLELIFEKTKGNPFFIEEFLKALYEEGLLVFNFDTGAWQCSIAS-LGILATT-DAVVEFLAARLQKLPGT 309 (849)
T ss_pred c-----ccchHHHHHHHHhcCCCccHHHHHHHHHhCCeeEecCCCcceeccHHh-cCCchhh-HHHHHHHHHHHhcCCHH
Confidence 1 2233478999999999999999999887642 23334321110 0011111 12445688899999999
Q ss_pred HHHHHhHhccCCCCcccChHHHHHHH
Q 002308 405 VKRCFSYCAVFPKDYNIKKDELITLW 430 (938)
Q Consensus 405 ~k~~f~~~~~fp~~~~i~~~~li~~w 430 (938)
.+..+...|++... |+.+.|...+
T Consensus 310 t~~Vl~~AA~iG~~--F~l~~La~l~ 333 (849)
T COG3899 310 TREVLKAAACIGNR--FDLDTLAALA 333 (849)
T ss_pred HHHHHHHHHHhCcc--CCHHHHHHHH
Confidence 99999999999765 4455555444
No 42
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=98.83 E-value=2.4e-08 Score=102.85 Aligned_cols=155 Identities=22% Similarity=0.290 Sum_probs=93.3
Q ss_pred CCCeEEEEEEccCCChHHHHHHHHhhhhhhhcccCeEEEEEeCCCCCHHHHHHHHHHHhcCCCCCCCcHHHHHHHH-HHH
Q 002308 174 QKGLHIISIVGMGGIGKTTLAQLACNHVEVKREFDKTLWVCVSETFDEFRIAKAMLEALTGSTSNLNALQSLLISI-DES 252 (938)
Q Consensus 174 ~~~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l-~~~ 252 (938)
.....-..+||++|+||||||+.+.. .....|. .++...+-.+-++++++ .- +..
T Consensus 45 ~~~l~SmIl~GPPG~GKTTlA~liA~--~~~~~f~-----~~sAv~~gvkdlr~i~e-----------------~a~~~~ 100 (436)
T COG2256 45 AGHLHSMILWGPPGTGKTTLARLIAG--TTNAAFE-----ALSAVTSGVKDLREIIE-----------------EARKNR 100 (436)
T ss_pred cCCCceeEEECCCCCCHHHHHHHHHH--hhCCceE-----EeccccccHHHHHHHHH-----------------HHHHHH
Confidence 34677788999999999999999988 4444442 22222111111222222 12 123
Q ss_pred hcCceEEEEEecCCCCCccChhHHHHhhhCCCCCcEEEE--EcCChhh--hh-hhcCCceEeCCCCChHHHHHHHHHhhc
Q 002308 253 IAGKRFLLVLDDVWDGDYIKWEPFYRCLKKGLHGSKILI--TTRKESI--VS-MMRSTDIISIEELAEEECWVLFKRLAF 327 (938)
Q Consensus 253 l~~~~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilv--Ttr~~~v--~~-~~~~~~~~~l~~L~~~~~~~lf~~~~~ 327 (938)
..|++.+|++|.|++-+..+.+.++ |.-..|.-|+| ||-|+.. -. ..+...++.+++|+.++-.+++.+.+.
T Consensus 101 ~~gr~tiLflDEIHRfnK~QQD~lL---p~vE~G~iilIGATTENPsF~ln~ALlSR~~vf~lk~L~~~di~~~l~ra~~ 177 (436)
T COG2256 101 LLGRRTILFLDEIHRFNKAQQDALL---PHVENGTIILIGATTENPSFELNPALLSRARVFELKPLSSEDIKKLLKRALL 177 (436)
T ss_pred hcCCceEEEEehhhhcChhhhhhhh---hhhcCCeEEEEeccCCCCCeeecHHHhhhhheeeeecCCHHHHHHHHHHHHh
Confidence 3489999999999876544444443 44446776666 6666632 11 234567999999999999999988432
Q ss_pred CCCCCch---hhHHHHHHHHHHHhcCCChhH
Q 002308 328 FGRSTEE---CEKLEQIGQRIARKCKGLPLA 355 (938)
Q Consensus 328 ~~~~~~~---~~~~~~~~~~i~~~~~g~Pla 355 (938)
.....-. ..-.++....+++.++|--.+
T Consensus 178 ~~~rgl~~~~~~i~~~a~~~l~~~s~GD~R~ 208 (436)
T COG2256 178 DEERGLGGQIIVLDEEALDYLVRLSNGDARR 208 (436)
T ss_pred hhhcCCCcccccCCHHHHHHHHHhcCchHHH
Confidence 2111110 001233456788888886543
No 43
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.80 E-value=4.9e-10 Score=109.35 Aligned_cols=90 Identities=24% Similarity=0.176 Sum_probs=61.9
Q ss_pred ccCCCcCCceEEEEecCCCCCCCCCccchHHHHhhCCCCCCCCeEEEeeecCCCCCCCchhccCCCCEEEEecCCCCC--
Q 002308 718 LDKKKYLSRLRLEFDKKGGGGGRRKNEDDQLLLEALQPPLNLKELEIHYYGGNTVFPSWMASLTNLKSLDLCFCENCE-- 795 (938)
Q Consensus 718 l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~-- 795 (938)
+..+.+|+.|+|++|.++. +-..-..+-|+++|.|++|.+.. + +.++.+.+|..||+++|++..
T Consensus 325 La~L~~L~~LDLS~N~Ls~------------~~Gwh~KLGNIKtL~La~N~iE~-L-SGL~KLYSLvnLDl~~N~Ie~ld 390 (490)
T KOG1259|consen 325 LAELPQLQLLDLSGNLLAE------------CVGWHLKLGNIKTLKLAQNKIET-L-SGLRKLYSLVNLDLSSNQIEELD 390 (490)
T ss_pred hhhcccceEeecccchhHh------------hhhhHhhhcCEeeeehhhhhHhh-h-hhhHhhhhheeccccccchhhHH
Confidence 4444555666666665432 11122234578888898888776 3 457788999999999997654
Q ss_pred cCCCCCCCCccceeecccccCceEeCc
Q 002308 796 QLPPLGKLPSLEQLFISYMSSVKRVGD 822 (938)
Q Consensus 796 ~l~~l~~l~~L~~L~L~~~~~l~~~~~ 822 (938)
....+|++|.|+.|.|.+|+ +..+++
T Consensus 391 eV~~IG~LPCLE~l~L~~NP-l~~~vd 416 (490)
T KOG1259|consen 391 EVNHIGNLPCLETLRLTGNP-LAGSVD 416 (490)
T ss_pred HhcccccccHHHHHhhcCCC-ccccch
Confidence 34459999999999999998 555544
No 44
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.79 E-value=1.7e-10 Score=122.47 Aligned_cols=154 Identities=21% Similarity=0.301 Sum_probs=97.1
Q ss_pred CcccccceEEEEccCCCcCcccccccCceeEEeccCCCCCCCCchhhHHHHHhccCCCeeEEecCCCCCCcccCcccccc
Q 002308 512 SLDEKVRHLMLIMGKESTFPISTCRAKRIRSLLIEWPEFGHSSLNGEILEELFRESTSLRALDFPSFYLPLEIPRNIEKL 591 (938)
Q Consensus 512 ~~~~~~r~l~l~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~n~~~~~lp~~~~~l 591 (938)
..+..+..+.+.+|.+..++..++.+..|..|+++.|+++. .+.. +..+ -|++|-+++|+ .+.+|..++.+
T Consensus 95 ~~f~~Le~liLy~n~~r~ip~~i~~L~~lt~l~ls~NqlS~------lp~~-lC~l-pLkvli~sNNk-l~~lp~~ig~~ 165 (722)
T KOG0532|consen 95 CAFVSLESLILYHNCIRTIPEAICNLEALTFLDLSSNQLSH------LPDG-LCDL-PLKVLIVSNNK-LTSLPEEIGLL 165 (722)
T ss_pred HHHHHHHHHHHHhccceecchhhhhhhHHHHhhhccchhhc------CChh-hhcC-cceeEEEecCc-cccCCcccccc
Confidence 33445555566666666666666666666666666665421 1222 2222 46677777776 55666667766
Q ss_pred CCCCeeeecCCccccccccccCCCCccEEEcCCCCCcccccccccccCccceeecCCCcccccCCccCCCCCCCcccCee
Q 002308 592 VHLRYLNLSDQKIKKLPETLCELYNLEKLDISGCSDLRELPKGIGKLINMKHLLNSGTRSLRYMPVGIGRLTGLRTLGEF 671 (938)
Q Consensus 592 ~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~l~~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~ 671 (938)
.+|..|+.+.|.+..+|..++.+..|+.|.++.|. +..+|..+..| .|..||++.| .+..+|-.|.+|+.||+|-+.
T Consensus 166 ~tl~~ld~s~nei~slpsql~~l~slr~l~vrRn~-l~~lp~El~~L-pLi~lDfScN-kis~iPv~fr~m~~Lq~l~Le 242 (722)
T KOG0532|consen 166 PTLAHLDVSKNEIQSLPSQLGYLTSLRDLNVRRNH-LEDLPEELCSL-PLIRLDFSCN-KISYLPVDFRKMRHLQVLQLE 242 (722)
T ss_pred hhHHHhhhhhhhhhhchHHhhhHHHHHHHHHhhhh-hhhCCHHHhCC-ceeeeecccC-ceeecchhhhhhhhheeeeec
Confidence 67777777777777777777777777777777766 55666666633 3667777655 445667777777777777777
Q ss_pred EecCCC
Q 002308 672 HVSAGG 677 (938)
Q Consensus 672 ~~~~~~ 677 (938)
+|.+.+
T Consensus 243 nNPLqS 248 (722)
T KOG0532|consen 243 NNPLQS 248 (722)
T ss_pred cCCCCC
Confidence 777665
No 45
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.76 E-value=3.8e-09 Score=118.09 Aligned_cols=182 Identities=35% Similarity=0.400 Sum_probs=125.1
Q ss_pred ccCCCeeEEecCCCCCCcccCccccccC-CCCeeeecCCccccccccccCCCCccEEEcCCCCCcccccccccccCccce
Q 002308 565 RESTSLRALDFPSFYLPLEIPRNIEKLV-HLRYLNLSDQKIKKLPETLCELYNLEKLDISGCSDLRELPKGIGKLINMKH 643 (938)
Q Consensus 565 ~~~~~Lr~L~L~~n~~~~~lp~~~~~l~-~L~~L~L~~~~i~~lp~~i~~l~~L~~L~l~~~~~l~~lp~~i~~l~~L~~ 643 (938)
..++.+..|++.+|. ...+|...+.+. +|++|++++|.+..+|..+..+++|+.|++++|. +..+|.....+++|+.
T Consensus 113 ~~~~~l~~L~l~~n~-i~~i~~~~~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N~-l~~l~~~~~~~~~L~~ 190 (394)
T COG4886 113 LELTNLTSLDLDNNN-ITDIPPLIGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFND-LSDLPKLLSNLSNLNN 190 (394)
T ss_pred hcccceeEEecCCcc-cccCccccccchhhcccccccccchhhhhhhhhccccccccccCCch-hhhhhhhhhhhhhhhh
Confidence 445788999999988 777787777774 8999999999999888888899999999999988 7778877668888999
Q ss_pred eecCCCcccccCCccCCCCCCCcccCeeEecCCCCCCCCcccccccccccccCcceeecCcCCCCChhhhhhhhccCCCc
Q 002308 644 LLNSGTRSLRYMPVGIGRLTGLRTLGEFHVSAGGGVDGSKACRLESLKNLEHLQVCCIRRLGDVSDVGEAKLLELDKKKY 723 (938)
Q Consensus 644 L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~~~~ 723 (938)
|++++| ....+|..++.+..|++|.+.+|.... ....+..+.++..|.
T Consensus 191 L~ls~N-~i~~l~~~~~~~~~L~~l~~~~N~~~~-----~~~~~~~~~~l~~l~-------------------------- 238 (394)
T COG4886 191 LDLSGN-KISDLPPEIELLSALEELDLSNNSIIE-----LLSSLSNLKNLSGLE-------------------------- 238 (394)
T ss_pred eeccCC-ccccCchhhhhhhhhhhhhhcCCccee-----cchhhhhcccccccc--------------------------
Confidence 999888 455667666566667777777664221 011233333333333
Q ss_pred CCceEEEEecCCCCCCCCCccchHHHHhhCCCCCCCCeEEEeeecCCCCCCCchhccCCCCEEEEecCCCCCcCCC
Q 002308 724 LSRLRLEFDKKGGGGGRRKNEDDQLLLEALQPPLNLKELEIHYYGGNTVFPSWMASLTNLKSLDLCFCENCEQLPP 799 (938)
Q Consensus 724 L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~l~~ 799 (938)
+..|.+.. ++..+..+++++.|++++|.+.. ++. ++.+.+|+.|+++++.....++.
T Consensus 239 -----l~~n~~~~------------~~~~~~~l~~l~~L~~s~n~i~~-i~~-~~~~~~l~~L~~s~n~~~~~~~~ 295 (394)
T COG4886 239 -----LSNNKLED------------LPESIGNLSNLETLDLSNNQISS-ISS-LGSLTNLRELDLSGNSLSNALPL 295 (394)
T ss_pred -----cCCceeee------------ccchhccccccceeccccccccc-ccc-ccccCccCEEeccCccccccchh
Confidence 33332221 13345556667777777777776 555 66777777777777766655554
No 46
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.72 E-value=5.2e-09 Score=108.08 Aligned_cols=184 Identities=17% Similarity=0.109 Sum_probs=127.8
Q ss_pred cccceEEEEccCCCcCc--ccccccCceeEEeccCCCCCCCCchhhHHHHHhccCCCeeEEecCCCCCCcccC-cccccc
Q 002308 515 EKVRHLMLIMGKESTFP--ISTCRAKRIRSLLIEWPEFGHSSLNGEILEELFRESTSLRALDFPSFYLPLEIP-RNIEKL 591 (938)
Q Consensus 515 ~~~r~l~l~~~~~~~~~--~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~n~~~~~lp-~~~~~l 591 (938)
+++|.+++.+......+ .-...|++++.|+|+.|-+.. -.....+...+++|+.|+|+.|.+..-.. ..-..+
T Consensus 121 kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~n----w~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l 196 (505)
T KOG3207|consen 121 KKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHN----WFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLL 196 (505)
T ss_pred HhhhheeecCccccccchhhhhhhCCcceeecchhhhHHh----HHHHHHHHHhcccchhcccccccccCCccccchhhh
Confidence 78888888888777544 366789999999999886421 11234457889999999999998432211 112367
Q ss_pred CCCCeeeecCCccc--cccccccCCCCccEEEcCCCCCcccccccccccCccceeecCCCcccccCC--ccCCCCCCCcc
Q 002308 592 VHLRYLNLSDQKIK--KLPETLCELYNLEKLDISGCSDLRELPKGIGKLINMKHLLNSGTRSLRYMP--VGIGRLTGLRT 667 (938)
Q Consensus 592 ~~L~~L~L~~~~i~--~lp~~i~~l~~L~~L~l~~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~p--~~l~~l~~L~~ 667 (938)
++|+.|.|++|.++ .+-.....+|+|+.|+|..|..+..-.....-+..|+.|+|++|+... .+ ..++.++.|..
T Consensus 197 ~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~-~~~~~~~~~l~~L~~ 275 (505)
T KOG3207|consen 197 SHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLID-FDQGYKVGTLPGLNQ 275 (505)
T ss_pred hhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccc-cccccccccccchhh
Confidence 89999999999988 444456678999999999996343333334567889999999986553 33 34788888999
Q ss_pred cCeeEecCCCCCCCC--cccccccccccccCcceeecC
Q 002308 668 LGEFHVSAGGGVDGS--KACRLESLKNLEHLQVCCIRR 703 (938)
Q Consensus 668 L~l~~~~~~~~~~~~--~~~~l~~l~~L~~L~l~~~~~ 703 (938)
|.++.+.+.+....+ .......+++|++|.+..|..
T Consensus 276 Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I 313 (505)
T KOG3207|consen 276 LNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNI 313 (505)
T ss_pred hhccccCcchhcCCCccchhhhcccccceeeecccCcc
Confidence 988888766522111 112234567777777776665
No 47
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=98.70 E-value=2.9e-07 Score=94.00 Aligned_cols=170 Identities=18% Similarity=0.205 Sum_probs=101.6
Q ss_pred chhhHHHHHHHHhccCcccCCCeEEEEEEccCCChHHHHHHHHhhhhhhhcccCeEEEEEeCCCCCHHHHHHHHHHHhcC
Q 002308 155 RVGERNALLSMLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNHVEVKREFDKTLWVCVSETFDEFRIAKAMLEALTG 234 (938)
Q Consensus 155 r~~~~~~l~~~l~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~ 234 (938)
....++++.+++.. .....+.|+|++|+|||++|+.+++.. .......+|+++..-.+ ..
T Consensus 22 ~~~~~~~l~~~~~~------~~~~~lll~G~~G~GKT~la~~~~~~~--~~~~~~~~~i~~~~~~~------~~------ 81 (226)
T TIGR03420 22 NAELLAALRQLAAG------KGDRFLYLWGESGSGKSHLLQAACAAA--EERGKSAIYLPLAELAQ------AD------ 81 (226)
T ss_pred cHHHHHHHHHHHhc------CCCCeEEEECCCCCCHHHHHHHHHHHH--HhcCCcEEEEeHHHHHH------hH------
Confidence 34566677776542 245689999999999999999999853 22333456666543211 00
Q ss_pred CCCCCCcHHHHHHHHHHHhcCceEEEEEecCCCCCcc-Ch-hHHHHhhhC-CCCCcEEEEEcCChh---------hhhhh
Q 002308 235 STSNLNALQSLLISIDESIAGKRFLLVLDDVWDGDYI-KW-EPFYRCLKK-GLHGSKILITTRKES---------IVSMM 302 (938)
Q Consensus 235 ~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~~~-~~-~~l~~~l~~-~~~gs~ilvTtr~~~---------v~~~~ 302 (938)
.. +...+.+. -+||+||++..... .| ..+...+.. ...+.++|+||+... +...+
T Consensus 82 --------~~----~~~~~~~~-~lLvIDdi~~l~~~~~~~~~L~~~l~~~~~~~~~iIits~~~~~~~~~~~~~L~~r~ 148 (226)
T TIGR03420 82 --------PE----VLEGLEQA-DLVCLDDVEAIAGQPEWQEALFHLYNRVREAGGRLLIAGRAAPAQLPLRLPDLRTRL 148 (226)
T ss_pred --------HH----HHhhcccC-CEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCeEEEECCCChHHCCcccHHHHHHH
Confidence 00 01112222 38999999765432 23 335544433 123447889888532 11222
Q ss_pred cCCceEeCCCCChHHHHHHHHHhhcCCCCCchhhHHHHHHHHHHHhcCCChhHHHHHHh
Q 002308 303 RSTDIISIEELAEEECWVLFKRLAFFGRSTEECEKLEQIGQRIARKCKGLPLAAKTMGS 361 (938)
Q Consensus 303 ~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~~~~ 361 (938)
.....+++.+++.++...++...+....... -.+..+.+++.+.|.|..+..+..
T Consensus 149 ~~~~~i~l~~l~~~e~~~~l~~~~~~~~~~~----~~~~l~~L~~~~~gn~r~L~~~l~ 203 (226)
T TIGR03420 149 AWGLVFQLPPLSDEEKIAALQSRAARRGLQL----PDEVADYLLRHGSRDMGSLMALLD 203 (226)
T ss_pred hcCeeEecCCCCHHHHHHHHHHHHHHcCCCC----CHHHHHHHHHhccCCHHHHHHHHH
Confidence 2245799999999999999887653222111 123456777788898887766643
No 48
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=98.68 E-value=5.6e-08 Score=89.68 Aligned_cols=118 Identities=19% Similarity=0.198 Sum_probs=80.7
Q ss_pred CeEEEEEEccCCChHHHHHHHHhhhhhhhc---ccCeEEEEEeCCCCCHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHH
Q 002308 176 GLHIISIVGMGGIGKTTLAQLACNHVEVKR---EFDKTLWVCVSETFDEFRIAKAMLEALTGSTSNLNALQSLLISIDES 252 (938)
Q Consensus 176 ~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~---~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~ 252 (938)
+.+.+.|+|++|+|||++++.+++...... .-..++|+.+....+...+...|+.+++.......+..++...+.+.
T Consensus 3 ~~~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~~~~~ 82 (131)
T PF13401_consen 3 SQRILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSSRTPRDFAQEILEALGLPLKSRQTSDELRSLLIDA 82 (131)
T ss_dssp ----EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHSSHHHHHHHHHHHHT-SSSSTS-HHHHHHHHHHH
T ss_pred CCcccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCCCCHHHHHHHHHHHhCccccccCCHHHHHHHHHHH
Confidence 457899999999999999999999532110 12457799988887999999999999997766655667777777777
Q ss_pred hcCc-eEEEEEecCCCC-CccChhHHHHhhhCCCCCcEEEEEcCC
Q 002308 253 IAGK-RFLLVLDDVWDG-DYIKWEPFYRCLKKGLHGSKILITTRK 295 (938)
Q Consensus 253 l~~~-~~LlVlDdv~~~-~~~~~~~l~~~l~~~~~gs~ilvTtr~ 295 (938)
+... ..+||+|+++.. +...++.+..... ..+.+||+..+.
T Consensus 83 l~~~~~~~lviDe~~~l~~~~~l~~l~~l~~--~~~~~vvl~G~~ 125 (131)
T PF13401_consen 83 LDRRRVVLLVIDEADHLFSDEFLEFLRSLLN--ESNIKVVLVGTP 125 (131)
T ss_dssp HHHCTEEEEEEETTHHHHTHHHHHHHHHHTC--SCBEEEEEEESS
T ss_pred HHhcCCeEEEEeChHhcCCHHHHHHHHHHHh--CCCCeEEEEECh
Confidence 7654 469999999765 4333344433333 566677777664
No 49
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.67 E-value=1e-06 Score=96.06 Aligned_cols=193 Identities=17% Similarity=0.200 Sum_probs=112.8
Q ss_pred CceecchhhHHHHHHHHhccCcccCCCeEEEEEEccCCChHHHHHHHHhhhhhhhcccCeEEEEEeCCCCCHHHHHHHHH
Q 002308 150 EEICGRVGERNALLSMLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNHVEVKREFDKTLWVCVSETFDEFRIAKAML 229 (938)
Q Consensus 150 ~~~vGr~~~~~~l~~~l~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 229 (938)
.+++|.+..++.+...+... .-.+.+.++|+.|+||||+|+.+++...-...+. ..++..-....++.
T Consensus 16 ~~iiGq~~~~~~l~~~~~~~-----~~~h~~L~~Gp~G~GKTtla~~la~~l~c~~~~~-------~~pc~~c~~c~~~~ 83 (363)
T PRK14961 16 RDIIGQKHIVTAISNGLSLG-----RIHHAWLLSGTRGVGKTTIARLLAKSLNCQNGIT-------SNPCRKCIICKEIE 83 (363)
T ss_pred hhccChHHHHHHHHHHHHcC-----CCCeEEEEecCCCCCHHHHHHHHHHHhcCCCCCC-------CCCCCCCHHHHHHh
Confidence 56899999999999988743 2356789999999999999999988421111100 00000000011111
Q ss_pred HHh----c-CCCCCCCcHHHHHHHHHHHh-----cCceEEEEEecCCCCCccChhHHHHhhhCCCCCcEEEEEcCCh-hh
Q 002308 230 EAL----T-GSTSNLNALQSLLISIDESI-----AGKRFLLVLDDVWDGDYIKWEPFYRCLKKGLHGSKILITTRKE-SI 298 (938)
Q Consensus 230 ~~l----~-~~~~~~~~~~~~~~~l~~~l-----~~~~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtr~~-~v 298 (938)
... . .........++... +.+.+ .+++-++|+|+++......++.+...+.......++|++|.+. .+
T Consensus 84 ~~~~~d~~~~~~~~~~~v~~ir~-i~~~~~~~p~~~~~kviIIDEa~~l~~~a~naLLk~lEe~~~~~~fIl~t~~~~~l 162 (363)
T PRK14961 84 KGLCLDLIEIDAASRTKVEEMRE-ILDNIYYSPSKSRFKVYLIDEVHMLSRHSFNALLKTLEEPPQHIKFILATTDVEKI 162 (363)
T ss_pred cCCCCceEEecccccCCHHHHHH-HHHHHhcCcccCCceEEEEEChhhcCHHHHHHHHHHHhcCCCCeEEEEEcCChHhh
Confidence 100 0 00000011222211 11111 2455699999998776556777887777655666777766543 33
Q ss_pred hhh-hcCCceEeCCCCChHHHHHHHHHhhcCCCCCchhhHHHHHHHHHHHhcCCChhHHHHH
Q 002308 299 VSM-MRSTDIISIEELAEEECWVLFKRLAFFGRSTEECEKLEQIGQRIARKCKGLPLAAKTM 359 (938)
Q Consensus 299 ~~~-~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~~ 359 (938)
... .+....+++.+++.++..+.+...+...+.... ++.++.|++.++|.|..+...
T Consensus 163 ~~tI~SRc~~~~~~~l~~~el~~~L~~~~~~~g~~i~----~~al~~ia~~s~G~~R~al~~ 220 (363)
T PRK14961 163 PKTILSRCLQFKLKIISEEKIFNFLKYILIKESIDTD----EYALKLIAYHAHGSMRDALNL 220 (363)
T ss_pred hHHHHhhceEEeCCCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCCHHHHHHH
Confidence 322 233578999999999999988876643322111 234678889999988654333
No 50
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=98.65 E-value=2.8e-06 Score=91.35 Aligned_cols=174 Identities=18% Similarity=0.220 Sum_probs=120.7
Q ss_pred CCceecchhhHHHHHHHHhccCcccCCCeEEEEEEccCCChHHHHHHHHhhhhhhhccc-C-eEEEEEeCCCCCHHHHHH
Q 002308 149 EEEICGRVGERNALLSMLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNHVEVKREF-D-KTLWVCVSETFDEFRIAK 226 (938)
Q Consensus 149 ~~~~vGr~~~~~~l~~~l~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f-~-~~~wv~~~~~~~~~~~~~ 226 (938)
|+.+.+|+.+++++...|...-. +..+.-+.|+|.+|+|||+.++.++.. ..... . .+++|++....+..+++.
T Consensus 16 P~~l~~Re~ei~~l~~~l~~~~~--~~~p~n~~iyG~~GTGKT~~~~~v~~~--l~~~~~~~~~~yINc~~~~t~~~i~~ 91 (366)
T COG1474 16 PEELPHREEEINQLASFLAPALR--GERPSNIIIYGPTGTGKTATVKFVMEE--LEESSANVEVVYINCLELRTPYQVLS 91 (366)
T ss_pred cccccccHHHHHHHHHHHHHHhc--CCCCccEEEECCCCCCHhHHHHHHHHH--HHhhhccCceEEEeeeeCCCHHHHHH
Confidence 44599999999999998876543 223344999999999999999999995 33332 1 279999999999999999
Q ss_pred HHHHHhcCCCCCCCcHHHHHHHHHHHhc--CceEEEEEecCCCCCccChhHHHHhhhCCC-CCcEEE--EEcCChhhhhh
Q 002308 227 AMLEALTGSTSNLNALQSLLISIDESIA--GKRFLLVLDDVWDGDYIKWEPFYRCLKKGL-HGSKIL--ITTRKESIVSM 301 (938)
Q Consensus 227 ~i~~~l~~~~~~~~~~~~~~~~l~~~l~--~~~~LlVlDdv~~~~~~~~~~l~~~l~~~~-~gs~il--vTtr~~~v~~~ 301 (938)
.|+++++..+.......+....+.+.+. ++.+++|||++..-....-+.+...+.... .+++|+ ..+-+......
T Consensus 92 ~i~~~~~~~p~~g~~~~~~~~~l~~~~~~~~~~~IvvLDEid~L~~~~~~~LY~L~r~~~~~~~~v~vi~i~n~~~~~~~ 171 (366)
T COG1474 92 KILNKLGKVPLTGDSSLEILKRLYDNLSKKGKTVIVILDEVDALVDKDGEVLYSLLRAPGENKVKVSIIAVSNDDKFLDY 171 (366)
T ss_pred HHHHHcCCCCCCCCchHHHHHHHHHHHHhcCCeEEEEEcchhhhccccchHHHHHHhhccccceeEEEEEEeccHHHHHH
Confidence 9999997554444555666666666665 578999999996532222245556555433 245443 33333322222
Q ss_pred --------hcCCceEeCCCCChHHHHHHHHHhhc
Q 002308 302 --------MRSTDIISIEELAEEECWVLFKRLAF 327 (938)
Q Consensus 302 --------~~~~~~~~l~~L~~~~~~~lf~~~~~ 327 (938)
.+. ..+...|-+.+|-.+++..++-
T Consensus 172 ld~rv~s~l~~-~~I~F~pY~a~el~~Il~~R~~ 204 (366)
T COG1474 172 LDPRVKSSLGP-SEIVFPPYTAEELYDILRERVE 204 (366)
T ss_pred hhhhhhhccCc-ceeeeCCCCHHHHHHHHHHHHH
Confidence 222 2477888899999999988764
No 51
>PRK13342 recombination factor protein RarA; Reviewed
Probab=98.65 E-value=2.7e-07 Score=102.55 Aligned_cols=178 Identities=21% Similarity=0.274 Sum_probs=105.7
Q ss_pred CceecchhhHHH---HHHHHhccCcccCCCeEEEEEEccCCChHHHHHHHHhhhhhhhcccCeEEEEEeCCCCCHHHHHH
Q 002308 150 EEICGRVGERNA---LLSMLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNHVEVKREFDKTLWVCVSETFDEFRIAK 226 (938)
Q Consensus 150 ~~~vGr~~~~~~---l~~~l~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~ 226 (938)
+.+||++..+.. +..++.. .....+.++|++|+||||+|+.+++. ....| +.++....-..-.+
T Consensus 12 ~d~vGq~~~v~~~~~L~~~i~~------~~~~~ilL~GppGtGKTtLA~~ia~~--~~~~~-----~~l~a~~~~~~~ir 78 (413)
T PRK13342 12 DEVVGQEHLLGPGKPLRRMIEA------GRLSSMILWGPPGTGKTTLARIIAGA--TDAPF-----EALSAVTSGVKDLR 78 (413)
T ss_pred HHhcCcHHHhCcchHHHHHHHc------CCCceEEEECCCCCCHHHHHHHHHHH--hCCCE-----EEEecccccHHHHH
Confidence 468888877655 7777653 24557888999999999999999884 33332 22222111111111
Q ss_pred HHHHHhcCCCCCCCcHHHHHHHHHH-HhcCceEEEEEecCCCCCccChhHHHHhhhCCCCCcEEEE--EcCChh--hhh-
Q 002308 227 AMLEALTGSTSNLNALQSLLISIDE-SIAGKRFLLVLDDVWDGDYIKWEPFYRCLKKGLHGSKILI--TTRKES--IVS- 300 (938)
Q Consensus 227 ~i~~~l~~~~~~~~~~~~~~~~l~~-~l~~~~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilv--Ttr~~~--v~~- 300 (938)
.+++. ... ...+++.+|++|+++.......+.+...+.. |..++| ||.+.. +..
T Consensus 79 ~ii~~-----------------~~~~~~~g~~~vL~IDEi~~l~~~~q~~LL~~le~---~~iilI~att~n~~~~l~~a 138 (413)
T PRK13342 79 EVIEE-----------------ARQRRSAGRRTILFIDEIHRFNKAQQDALLPHVED---GTITLIGATTENPSFEVNPA 138 (413)
T ss_pred HHHHH-----------------HHHhhhcCCceEEEEechhhhCHHHHHHHHHHhhc---CcEEEEEeCCCChhhhccHH
Confidence 22211 111 1245788999999987655555556555543 444444 344432 111
Q ss_pred hhcCCceEeCCCCChHHHHHHHHHhhcCCCCCchhhHHHHHHHHHHHhcCCChhHHHHHHh
Q 002308 301 MMRSTDIISIEELAEEECWVLFKRLAFFGRSTEECEKLEQIGQRIARKCKGLPLAAKTMGS 361 (938)
Q Consensus 301 ~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~~~~ 361 (938)
.......+.+.+++.++...++.+.+....... .....+..+.|++.|+|.|..+..+..
T Consensus 139 L~SR~~~~~~~~ls~e~i~~lL~~~l~~~~~~~-i~i~~~al~~l~~~s~Gd~R~aln~Le 198 (413)
T PRK13342 139 LLSRAQVFELKPLSEEDIEQLLKRALEDKERGL-VELDDEALDALARLANGDARRALNLLE 198 (413)
T ss_pred HhccceeeEeCCCCHHHHHHHHHHHHHHhhcCC-CCCCHHHHHHHHHhCCCCHHHHHHHHH
Confidence 123346899999999999999988653211100 012234567889999999877654443
No 52
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.64 E-value=6.1e-09 Score=98.56 Aligned_cols=107 Identities=22% Similarity=0.319 Sum_probs=31.1
Q ss_pred ccCceeEEeccCCCCCCCCchhhHHHHHhccCCCeeEEecCCCCCCcccCccccccCCCCeeeecCCccccccccc-cCC
Q 002308 536 RAKRIRSLLIEWPEFGHSSLNGEILEELFRESTSLRALDFPSFYLPLEIPRNIEKLVHLRYLNLSDQKIKKLPETL-CEL 614 (938)
Q Consensus 536 ~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~n~~~~~lp~~~~~l~~L~~L~L~~~~i~~lp~~i-~~l 614 (938)
+..+++.|.+.+|.+. . ....-..+.+|++|+|++|. +..++ .+..+++|++|++++|.|+.+++.+ ..+
T Consensus 17 n~~~~~~L~L~~n~I~------~-Ie~L~~~l~~L~~L~Ls~N~-I~~l~-~l~~L~~L~~L~L~~N~I~~i~~~l~~~l 87 (175)
T PF14580_consen 17 NPVKLRELNLRGNQIS------T-IENLGATLDKLEVLDLSNNQ-ITKLE-GLPGLPRLKTLDLSNNRISSISEGLDKNL 87 (175)
T ss_dssp --------------------------S--TT-TT--EEE-TTS---S--T-T----TT--EEE--SS---S-CHHHHHH-
T ss_pred cccccccccccccccc------c-ccchhhhhcCCCEEECCCCC-Ccccc-CccChhhhhhcccCCCCCCccccchHHhC
Confidence 4445677777766641 1 12211245667777777776 43443 3566677777777777777665544 356
Q ss_pred CCccEEEcCCCCCccccc--ccccccCccceeecCCCccc
Q 002308 615 YNLEKLDISGCSDLRELP--KGIGKLINMKHLLNSGTRSL 652 (938)
Q Consensus 615 ~~L~~L~l~~~~~l~~lp--~~i~~l~~L~~L~l~~~~~~ 652 (938)
++|++|++++|. +..+- ..+..+++|++|++.+|+..
T Consensus 88 p~L~~L~L~~N~-I~~l~~l~~L~~l~~L~~L~L~~NPv~ 126 (175)
T PF14580_consen 88 PNLQELYLSNNK-ISDLNELEPLSSLPKLRVLSLEGNPVC 126 (175)
T ss_dssp TT--EEE-TTS----SCCCCGGGGG-TT--EEE-TT-GGG
T ss_pred CcCCEEECcCCc-CCChHHhHHHHcCCCcceeeccCCccc
Confidence 777777777766 32221 23455666777777766443
No 53
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.64 E-value=1.9e-08 Score=112.38 Aligned_cols=148 Identities=22% Similarity=0.264 Sum_probs=115.8
Q ss_pred EEEEccCCCcCcccccccCceeEEeccCCCCCCCCchhhHHHHHhccC-CCeeEEecCCCCCCcccCccccccCCCCeee
Q 002308 520 LMLIMGKESTFPISTCRAKRIRSLLIEWPEFGHSSLNGEILEELFRES-TSLRALDFPSFYLPLEIPRNIEKLVHLRYLN 598 (938)
Q Consensus 520 l~l~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~-~~Lr~L~L~~n~~~~~lp~~~~~l~~L~~L~ 598 (938)
+....+............+.+..|.+.++.+. .+++. ...+ .+|+.|++++|. ...+|..++.+++|+.|+
T Consensus 98 l~~~~~~~~~~~~~~~~~~~l~~L~l~~n~i~------~i~~~-~~~~~~nL~~L~l~~N~-i~~l~~~~~~l~~L~~L~ 169 (394)
T COG4886 98 LDLNLNRLRSNISELLELTNLTSLDLDNNNIT------DIPPL-IGLLKSNLKELDLSDNK-IESLPSPLRNLPNLKNLD 169 (394)
T ss_pred eeccccccccCchhhhcccceeEEecCCcccc------cCccc-cccchhhcccccccccc-hhhhhhhhhccccccccc
Confidence 44555554334445556688999999888752 22222 3344 389999999999 777777899999999999
Q ss_pred ecCCccccccccccCCCCccEEEcCCCCCcccccccccccCccceeecCCCcccccCCccCCCCCCCcccCeeEecCCC
Q 002308 599 LSDQKIKKLPETLCELYNLEKLDISGCSDLRELPKGIGKLINMKHLLNSGTRSLRYMPVGIGRLTGLRTLGEFHVSAGG 677 (938)
Q Consensus 599 L~~~~i~~lp~~i~~l~~L~~L~l~~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~~~~ 677 (938)
+++|.+..+|...+.+++|+.|++++|. +..+|..+..+..|+.|.+++|. ....+..+.++.++..|.+.+|....
T Consensus 170 l~~N~l~~l~~~~~~~~~L~~L~ls~N~-i~~l~~~~~~~~~L~~l~~~~N~-~~~~~~~~~~~~~l~~l~l~~n~~~~ 246 (394)
T COG4886 170 LSFNDLSDLPKLLSNLSNLNNLDLSGNK-ISDLPPEIELLSALEELDLSNNS-IIELLSSLSNLKNLSGLELSNNKLED 246 (394)
T ss_pred cCCchhhhhhhhhhhhhhhhheeccCCc-cccCchhhhhhhhhhhhhhcCCc-ceecchhhhhcccccccccCCceeee
Confidence 9999999999988899999999999998 88899877777889999999884 34566678888888888876666543
No 54
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.62 E-value=4.7e-09 Score=102.63 Aligned_cols=132 Identities=27% Similarity=0.265 Sum_probs=85.1
Q ss_pred CCeeEEecCCCCCCcccCccccccCCCCeeeecCCccccccccccCCCCccEEEcCCCCCcccccccccccCccceeecC
Q 002308 568 TSLRALDFPSFYLPLEIPRNIEKLVHLRYLNLSDQKIKKLPETLCELYNLEKLDISGCSDLRELPKGIGKLINMKHLLNS 647 (938)
Q Consensus 568 ~~Lr~L~L~~n~~~~~lp~~~~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~l~~~~~l~~lp~~i~~l~~L~~L~l~ 647 (938)
+.|..|||++|. +..+.+++.-++.++.|++|.|.|..+.. +..|++|+.|||++|. +..+...-.++-|++.|.|+
T Consensus 284 q~LtelDLS~N~-I~~iDESvKL~Pkir~L~lS~N~i~~v~n-La~L~~L~~LDLS~N~-Ls~~~Gwh~KLGNIKtL~La 360 (490)
T KOG1259|consen 284 QELTELDLSGNL-ITQIDESVKLAPKLRRLILSQNRIRTVQN-LAELPQLQLLDLSGNL-LAECVGWHLKLGNIKTLKLA 360 (490)
T ss_pred hhhhhccccccc-hhhhhhhhhhccceeEEeccccceeeehh-hhhcccceEeecccch-hHhhhhhHhhhcCEeeeehh
Confidence 356777777776 55666666667777777777777776644 6667777777777776 55555444566677777777
Q ss_pred CCcccccCCccCCCCCCCcccCeeEecCCCCCCCCcccccccccccccCcceeecCcCCC
Q 002308 648 GTRSLRYMPVGIGRLTGLRTLGEFHVSAGGGVDGSKACRLESLKNLEHLQVCCIRRLGDV 707 (938)
Q Consensus 648 ~~~~~~~~p~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~ 707 (938)
+|. +..+ .+++++-+|..|++.+|++...- ....++.++.|+.+.+.+|.....+
T Consensus 361 ~N~-iE~L-SGL~KLYSLvnLDl~~N~Ie~ld---eV~~IG~LPCLE~l~L~~NPl~~~v 415 (490)
T KOG1259|consen 361 QNK-IETL-SGLRKLYSLVNLDLSSNQIEELD---EVNHIGNLPCLETLRLTGNPLAGSV 415 (490)
T ss_pred hhh-Hhhh-hhhHhhhhheeccccccchhhHH---HhcccccccHHHHHhhcCCCccccc
Confidence 762 2222 45667777777777777665411 1334666777777777777655443
No 55
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=98.61 E-value=1.2e-06 Score=99.44 Aligned_cols=179 Identities=15% Similarity=0.173 Sum_probs=115.9
Q ss_pred CceecchhhHHHHHHHHhccCcccCCCeEEEEEEccCCChHHHHHHHHhhhhhhhc-------------------ccCeE
Q 002308 150 EEICGRVGERNALLSMLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNHVEVKR-------------------EFDKT 210 (938)
Q Consensus 150 ~~~vGr~~~~~~l~~~l~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~-------------------~f~~~ 210 (938)
+++||.+..++.|..++... .-.+.+.++|..|+||||+|+.+.+...... .|..+
T Consensus 16 dEVIGQe~Vv~~L~~aL~~g-----RL~HAyLFtGPpGvGKTTlAriLAKaLnCe~~~~~~PCG~C~sCr~I~~G~h~Dv 90 (830)
T PRK07003 16 ASLVGQEHVVRALTHALDGG-----RLHHAYLFTGTRGVGKTTLSRIFAKALNCETGVTSQPCGVCRACREIDEGRFVDY 90 (830)
T ss_pred HHHcCcHHHHHHHHHHHhcC-----CCCeEEEEECCCCCCHHHHHHHHHHHhcCccCCCCCCCcccHHHHHHhcCCCceE
Confidence 57899999999999998743 2356678999999999999998887432111 11112
Q ss_pred EEEEeCCCCCHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHH----hcCceEEEEEecCCCCCccChhHHHHhhhCCCCC
Q 002308 211 LWVCVSETFDEFRIAKAMLEALTGSTSNLNALQSLLISIDES----IAGKRFLLVLDDVWDGDYIKWEPFYRCLKKGLHG 286 (938)
Q Consensus 211 ~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~----l~~~~~LlVlDdv~~~~~~~~~~l~~~l~~~~~g 286 (938)
++++.+.. ..+++....+... ..++.-++|||+++..+...|+.++..+..-...
T Consensus 91 iEIDAas~---------------------rgVDdIReLIe~a~~~P~~gr~KVIIIDEah~LT~~A~NALLKtLEEPP~~ 149 (830)
T PRK07003 91 VEMDAASN---------------------RGVDEMAALLERAVYAPVDARFKVYMIDEVHMLTNHAFNAMLKTLEEPPPH 149 (830)
T ss_pred EEeccccc---------------------ccHHHHHHHHHHHHhccccCCceEEEEeChhhCCHHHHHHHHHHHHhcCCC
Confidence 22222211 1222222222211 1244558899999887766788888888776667
Q ss_pred cEEEEEcCChh-hhhh-hcCCceEeCCCCChHHHHHHHHHhhcCCCCCchhhHHHHHHHHHHHhcCCChh-HHHH
Q 002308 287 SKILITTRKES-IVSM-MRSTDIISIEELAEEECWVLFKRLAFFGRSTEECEKLEQIGQRIARKCKGLPL-AAKT 358 (938)
Q Consensus 287 s~ilvTtr~~~-v~~~-~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl-ai~~ 358 (938)
.++|+||++.. +... .+.+..+.+.+++.++..+.+.+.+...+.... .+....|++.++|... ++..
T Consensus 150 v~FILaTtd~~KIp~TIrSRCq~f~Fk~Ls~eeIv~~L~~Il~~EgI~id----~eAL~lIA~~A~GsmRdALsL 220 (830)
T PRK07003 150 VKFILATTDPQKIPVTVLSRCLQFNLKQMPAGHIVSHLERILGEERIAFE----PQALRLLARAAQGSMRDALSL 220 (830)
T ss_pred eEEEEEECChhhccchhhhheEEEecCCcCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCCHHHHHHH
Confidence 78777777653 3222 244678999999999999999887644332222 2346788899988654 4444
No 56
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.60 E-value=3.2e-08 Score=93.76 Aligned_cols=133 Identities=23% Similarity=0.248 Sum_probs=46.6
Q ss_pred ccCCCeeEEecCCCCCCcccCcccc-ccCCCCeeeecCCccccccccccCCCCccEEEcCCCCCccccccccc-ccCccc
Q 002308 565 RESTSLRALDFPSFYLPLEIPRNIE-KLVHLRYLNLSDQKIKKLPETLCELYNLEKLDISGCSDLRELPKGIG-KLINMK 642 (938)
Q Consensus 565 ~~~~~Lr~L~L~~n~~~~~lp~~~~-~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~l~~~~~l~~lp~~i~-~l~~L~ 642 (938)
.+...++.|+|.+|. +..+ +.++ .+.+|+.|+|++|.|+.++ .+..+++|++|++++|. +..++..+. .+++|+
T Consensus 16 ~n~~~~~~L~L~~n~-I~~I-e~L~~~l~~L~~L~Ls~N~I~~l~-~l~~L~~L~~L~L~~N~-I~~i~~~l~~~lp~L~ 91 (175)
T PF14580_consen 16 NNPVKLRELNLRGNQ-ISTI-ENLGATLDKLEVLDLSNNQITKLE-GLPGLPRLKTLDLSNNR-ISSISEGLDKNLPNLQ 91 (175)
T ss_dssp ----------------------S--TT-TT--EEE-TTS--S--T-T----TT--EEE--SS----S-CHHHHHH-TT--
T ss_pred ccccccccccccccc-cccc-cchhhhhcCCCEEECCCCCCcccc-CccChhhhhhcccCCCC-CCccccchHHhCCcCC
Confidence 445567888888887 3333 2354 4677888888888888775 47778888888888887 555554443 578888
Q ss_pred eeecCCCccccc-CCccCCCCCCCcccCeeEecCCCCCCCCcccccccccccccCcceeec
Q 002308 643 HLLNSGTRSLRY-MPVGIGRLTGLRTLGEFHVSAGGGVDGSKACRLESLKNLEHLQVCCIR 702 (938)
Q Consensus 643 ~L~l~~~~~~~~-~p~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~ 702 (938)
+|++++|.+... --..+..+++|+.|++.+|+....... -...+..+++|+.|+...+.
T Consensus 92 ~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~Y-R~~vi~~lP~Lk~LD~~~V~ 151 (175)
T PF14580_consen 92 ELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEKKNY-RLFVIYKLPSLKVLDGQDVT 151 (175)
T ss_dssp EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGSTTH-HHHHHHH-TT-SEETTEETT
T ss_pred EEECcCCcCCChHHhHHHHcCCCcceeeccCCcccchhhH-HHHHHHHcChhheeCCEEcc
Confidence 888887754321 112356677788888877776542111 12235567777777765443
No 57
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.60 E-value=1.2e-06 Score=101.51 Aligned_cols=184 Identities=16% Similarity=0.191 Sum_probs=116.1
Q ss_pred CceecchhhHHHHHHHHhccCcccCCCeEEEEEEccCCChHHHHHHHHhhhhhhhcc-------------------cCeE
Q 002308 150 EEICGRVGERNALLSMLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNHVEVKRE-------------------FDKT 210 (938)
Q Consensus 150 ~~~vGr~~~~~~l~~~l~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~-------------------f~~~ 210 (938)
..+||.+..++.+..++.... -.+.+.++|+.|+||||+|+.+++...-... |.-+
T Consensus 16 ddIIGQe~Iv~~LknaI~~~r-----l~HAyLFtGPpGtGKTTLARiLAk~Lnce~~~~~~pCg~C~sC~~i~~g~~~Dv 90 (944)
T PRK14949 16 EQMVGQSHVLHALTNALTQQR-----LHHAYLFTGTRGVGKTSLARLFAKGLNCEQGVTATPCGVCSSCVEIAQGRFVDL 90 (944)
T ss_pred HHhcCcHHHHHHHHHHHHhCC-----CCeEEEEECCCCCCHHHHHHHHHHhccCccCCCCCCCCCchHHHHHhcCCCceE
Confidence 579999999999999887432 3456689999999999999999985211111 1111
Q ss_pred EEEEeCCCCCHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHH-HhcCceEEEEEecCCCCCccChhHHHHhhhCCCCCcEE
Q 002308 211 LWVCVSETFDEFRIAKAMLEALTGSTSNLNALQSLLISIDE-SIAGKRFLLVLDDVWDGDYIKWEPFYRCLKKGLHGSKI 289 (938)
Q Consensus 211 ~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~-~l~~~~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~i 289 (938)
+++.......+ .++.++...+.. -..+++-++|||+++......++.++..+..-....++
T Consensus 91 iEidAas~~kV------------------DdIReLie~v~~~P~~gk~KViIIDEAh~LT~eAqNALLKtLEEPP~~vrF 152 (944)
T PRK14949 91 IEVDAASRTKV------------------DDTRELLDNVQYRPSRGRFKVYLIDEVHMLSRSSFNALLKTLEEPPEHVKF 152 (944)
T ss_pred EEeccccccCH------------------HHHHHHHHHHHhhhhcCCcEEEEEechHhcCHHHHHHHHHHHhccCCCeEE
Confidence 12211111111 112222222211 12366779999999887777778888888765556666
Q ss_pred EEEcCC-hhhhhh-hcCCceEeCCCCChHHHHHHHHHhhcCCCCCchhhHHHHHHHHHHHhcCCChhHHHHHH
Q 002308 290 LITTRK-ESIVSM-MRSTDIISIEELAEEECWVLFKRLAFFGRSTEECEKLEQIGQRIARKCKGLPLAAKTMG 360 (938)
Q Consensus 290 lvTtr~-~~v~~~-~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~~~ 360 (938)
|++|.+ ..+... ......+++.+++.++..+++.+.+...+.. ...+....|++.++|.|..+..+.
T Consensus 153 ILaTTe~~kLl~TIlSRCq~f~fkpLs~eEI~~~L~~il~~EgI~----~edeAL~lIA~~S~Gd~R~ALnLL 221 (944)
T PRK14949 153 LLATTDPQKLPVTVLSRCLQFNLKSLTQDEIGTQLNHILTQEQLP----FEAEALTLLAKAANGSMRDALSLT 221 (944)
T ss_pred EEECCCchhchHHHHHhheEEeCCCCCHHHHHHHHHHHHHHcCCC----CCHHHHHHHHHHcCCCHHHHHHHH
Confidence 665554 334322 3345789999999999999998866432211 122346789999999886554443
No 58
>PTZ00202 tuzin; Provisional
Probab=98.59 E-value=6.5e-06 Score=86.90 Aligned_cols=168 Identities=15% Similarity=0.178 Sum_probs=105.9
Q ss_pred cCCCCCCceecchhhHHHHHHHHhccCcccCCCeEEEEEEccCCChHHHHHHHHhhhhhhhcccCeEEEEEeCCCCCHHH
Q 002308 144 TSLIDEEEICGRVGERNALLSMLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNHVEVKREFDKTLWVCVSETFDEFR 223 (938)
Q Consensus 144 ~~~~~~~~~vGr~~~~~~l~~~l~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~ 223 (938)
..+++.+.|+||+.++.++...|...+. ...+++.|.|++|+|||||++.+..... + ..++++.. +..+
T Consensus 256 ~lPa~~~~FVGReaEla~Lr~VL~~~d~---~~privvLtG~~G~GKTTLlR~~~~~l~----~-~qL~vNpr---g~eE 324 (550)
T PTZ00202 256 SAPAVIRQFVSREAEESWVRQVLRRLDT---AHPRIVVFTGFRGCGKSSLCRSAVRKEG----M-PAVFVDVR---GTED 324 (550)
T ss_pred CCCCCccCCCCcHHHHHHHHHHHhccCC---CCceEEEEECCCCCCHHHHHHHHHhcCC----c-eEEEECCC---CHHH
Confidence 3455677899999999999999975442 2456999999999999999999987321 1 23333333 6799
Q ss_pred HHHHHHHHhcCCCCCC--CcHHHHHHHHHHH-hc-CceEEEEEecCCCCCccChhHHH---HhhhCCCCCcEEEEEcCCh
Q 002308 224 IAKAMLEALTGSTSNL--NALQSLLISIDES-IA-GKRFLLVLDDVWDGDYIKWEPFY---RCLKKGLHGSKILITTRKE 296 (938)
Q Consensus 224 ~~~~i~~~l~~~~~~~--~~~~~~~~~l~~~-l~-~~~~LlVlDdv~~~~~~~~~~l~---~~l~~~~~gs~ilvTtr~~ 296 (938)
++..++.+|+.+.... +-.+.+.+.+.+. .. +++.+||+-==+.. ....+. ..+.....-|.|++----+
T Consensus 325 lLr~LL~ALGV~p~~~k~dLLrqIqeaLl~~~~e~GrtPVLII~lreg~---~l~rvyne~v~la~drr~ch~v~evple 401 (550)
T PTZ00202 325 TLRSVVKALGVPNVEACGDLLDFISEACRRAKKMNGETPLLVLKLREGS---SLQRVYNEVVALACDRRLCHVVIEVPLE 401 (550)
T ss_pred HHHHHHHHcCCCCcccHHHHHHHHHHHHHHHHHhCCCCEEEEEEecCCC---cHHHHHHHHHHHHccchhheeeeeehHh
Confidence 9999999999743221 1123333333332 22 66777776532211 112211 2344445567777655443
Q ss_pred hhhhh---hcCCceEeCCCCChHHHHHHHHHh
Q 002308 297 SIVSM---MRSTDIISIEELAEEECWVLFKRL 325 (938)
Q Consensus 297 ~v~~~---~~~~~~~~l~~L~~~~~~~lf~~~ 325 (938)
.+... ...-..|.+.+|+.++|.++-.+.
T Consensus 402 slt~~~~~lprldf~~vp~fsr~qaf~y~~h~ 433 (550)
T PTZ00202 402 SLTIANTLLPRLDFYLVPNFSRSQAFAYTQHA 433 (550)
T ss_pred hcchhcccCccceeEecCCCCHHHHHHHHhhc
Confidence 32222 122468999999999999887765
No 59
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=98.58 E-value=1.3e-06 Score=84.37 Aligned_cols=182 Identities=23% Similarity=0.237 Sum_probs=98.3
Q ss_pred CCceecchhhHHHHHHHHhccCcccCCCeEEEEEEccCCChHHHHHHHHhhhhhhhcccCeEEEEEeCCCCCHHHHHHHH
Q 002308 149 EEEICGRVGERNALLSMLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNHVEVKREFDKTLWVCVSETFDEFRIAKAM 228 (938)
Q Consensus 149 ~~~~vGr~~~~~~l~~~l~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i 228 (938)
-++|||.+.-++.+.-++...... ++....+.+||++|+||||||.-+++ .....|. +++...-....+ +..+
T Consensus 23 L~efiGQ~~l~~~l~i~i~aa~~r-~~~l~h~lf~GPPG~GKTTLA~IIA~--e~~~~~~---~~sg~~i~k~~d-l~~i 95 (233)
T PF05496_consen 23 LDEFIGQEHLKGNLKILIRAAKKR-GEALDHMLFYGPPGLGKTTLARIIAN--ELGVNFK---ITSGPAIEKAGD-LAAI 95 (233)
T ss_dssp CCCS-S-HHHHHHHHHHHHHHHCT-TS---EEEEESSTTSSHHHHHHHHHH--HCT--EE---EEECCC--SCHH-HHHH
T ss_pred HHHccCcHHHHhhhHHHHHHHHhc-CCCcceEEEECCCccchhHHHHHHHh--ccCCCeE---eccchhhhhHHH-HHHH
Confidence 467999998888766555432110 33567899999999999999999998 3444442 222211001111 1111
Q ss_pred HHHhcCCCCCCCcHHHHHHHHHHHhcCceEEEEEecCCCCCccChhHHHHhhhCCC--------C-----------CcEE
Q 002308 229 LEALTGSTSNLNALQSLLISIDESIAGKRFLLVLDDVWDGDYIKWEPFYRCLKKGL--------H-----------GSKI 289 (938)
Q Consensus 229 ~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~~~~~~~l~~~l~~~~--------~-----------gs~i 289 (938)
+.. + +++-+|++|+++.-....-+.++.++.++. + -+-|
T Consensus 96 l~~---------------------l-~~~~ILFIDEIHRlnk~~qe~LlpamEd~~idiiiG~g~~ar~~~~~l~~FTli 153 (233)
T PF05496_consen 96 LTN---------------------L-KEGDILFIDEIHRLNKAQQEILLPAMEDGKIDIIIGKGPNARSIRINLPPFTLI 153 (233)
T ss_dssp HHT------------------------TT-EEEECTCCC--HHHHHHHHHHHHCSEEEEEBSSSSS-BEEEEE----EEE
T ss_pred HHh---------------------c-CCCcEEEEechhhccHHHHHHHHHHhccCeEEEEeccccccceeeccCCCceEe
Confidence 111 1 234577778887765555555666555421 1 1223
Q ss_pred EEEcCChhhhhhhcCCc--eEeCCCCChHHHHHHHHHhhcCCCCCchhhHHHHHHHHHHHhcCCChhHHHHHHhhh
Q 002308 290 LITTRKESIVSMMRSTD--IISIEELAEEECWVLFKRLAFFGRSTEECEKLEQIGQRIARKCKGLPLAAKTMGSLM 363 (938)
Q Consensus 290 lvTtr~~~v~~~~~~~~--~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~~~~~l 363 (938)
=-|||..-+........ ..++...+.+|-.++..+.+..-...- .++.+.+|++.+.|-|--..-+-...
T Consensus 154 gATTr~g~ls~pLrdRFgi~~~l~~Y~~~el~~Iv~r~a~~l~i~i----~~~~~~~Ia~rsrGtPRiAnrll~rv 225 (233)
T PF05496_consen 154 GATTRAGLLSSPLRDRFGIVLRLEFYSEEELAKIVKRSARILNIEI----DEDAAEEIARRSRGTPRIANRLLRRV 225 (233)
T ss_dssp EEESSGCCTSHCCCTTSSEEEE----THHHHHHHHHHCCHCTT-EE-----HHHHHHHHHCTTTSHHHHHHHHHHH
T ss_pred eeeccccccchhHHhhcceecchhcCCHHHHHHHHHHHHHHhCCCc----CHHHHHHHHHhcCCChHHHHHHHHHH
Confidence 34777654444433322 457999999999999998765433322 23458899999999998665554444
No 60
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=98.57 E-value=1.4e-06 Score=95.11 Aligned_cols=198 Identities=14% Similarity=0.098 Sum_probs=110.6
Q ss_pred CceecchhhHHHHHHHHhccCcccCCCeEEEEEEccCCChHHHHHHHHhhhhhhhcccC-eEEEEEeCCCCCH--HHHHH
Q 002308 150 EEICGRVGERNALLSMLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNHVEVKREFD-KTLWVCVSETFDE--FRIAK 226 (938)
Q Consensus 150 ~~~vGr~~~~~~l~~~l~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~-~~~wv~~~~~~~~--~~~~~ 226 (938)
..++|++..++.+..++..+ ..+.+.++|++|+||||+|+.+++... ...+. ..++++++...+. ..+..
T Consensus 15 ~~~~g~~~~~~~L~~~~~~~------~~~~lll~Gp~GtGKT~la~~~~~~l~-~~~~~~~~~~i~~~~~~~~~~~~~~~ 87 (337)
T PRK12402 15 EDILGQDEVVERLSRAVDSP------NLPHLLVQGPPGSGKTAAVRALARELY-GDPWENNFTEFNVADFFDQGKKYLVE 87 (337)
T ss_pred HHhcCCHHHHHHHHHHHhCC------CCceEEEECCCCCCHHHHHHHHHHHhc-CcccccceEEechhhhhhcchhhhhc
Confidence 56899999999999988642 334578999999999999999988421 12222 2345554331100 00000
Q ss_pred --HHHHHhcCC-CCCCCcHHHHHHHHHHH---h--cCceEEEEEecCCCCCccChhHHHHhhhCCCCCcEEEEEcCChh-
Q 002308 227 --AMLEALTGS-TSNLNALQSLLISIDES---I--AGKRFLLVLDDVWDGDYIKWEPFYRCLKKGLHGSKILITTRKES- 297 (938)
Q Consensus 227 --~i~~~l~~~-~~~~~~~~~~~~~l~~~---l--~~~~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtr~~~- 297 (938)
.....+... .......+.....++.. . .+.+-+||+||+..........+...+......+++|+|+.+..
T Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDe~~~l~~~~~~~L~~~le~~~~~~~~Il~~~~~~~ 167 (337)
T PRK12402 88 DPRFAHFLGTDKRIRSSKIDNFKHVLKEYASYRPLSADYKTILLDNAEALREDAQQALRRIMEQYSRTCRFIIATRQPSK 167 (337)
T ss_pred CcchhhhhhhhhhhccchHHHHHHHHHHHHhcCCCCCCCcEEEEeCcccCCHHHHHHHHHHHHhccCCCeEEEEeCChhh
Confidence 000000000 00001111122212211 1 13345899999976543344556666655455567887775432
Q ss_pred hhhhh-cCCceEeCCCCChHHHHHHHHHhhcCCCCCchhhHHHHHHHHHHHhcCCChhHHHH
Q 002308 298 IVSMM-RSTDIISIEELAEEECWVLFKRLAFFGRSTEECEKLEQIGQRIARKCKGLPLAAKT 358 (938)
Q Consensus 298 v~~~~-~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~ 358 (938)
+.... .....+++.+++.++...++...+...+.... .+..+.+++.++|.+-.+..
T Consensus 168 ~~~~L~sr~~~v~~~~~~~~~~~~~l~~~~~~~~~~~~----~~al~~l~~~~~gdlr~l~~ 225 (337)
T PRK12402 168 LIPPIRSRCLPLFFRAPTDDELVDVLESIAEAEGVDYD----DDGLELIAYYAGGDLRKAIL 225 (337)
T ss_pred CchhhcCCceEEEecCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCCHHHHHH
Confidence 22222 23457889999999999998887643332222 33467888888887665543
No 61
>PLN03150 hypothetical protein; Provisional
Probab=98.57 E-value=8.5e-08 Score=112.02 Aligned_cols=107 Identities=26% Similarity=0.342 Sum_probs=89.7
Q ss_pred CeeEEecCCCCCCcccCccccccCCCCeeeecCCccc-cccccccCCCCccEEEcCCCCCcccccccccccCccceeecC
Q 002308 569 SLRALDFPSFYLPLEIPRNIEKLVHLRYLNLSDQKIK-KLPETLCELYNLEKLDISGCSDLRELPKGIGKLINMKHLLNS 647 (938)
Q Consensus 569 ~Lr~L~L~~n~~~~~lp~~~~~l~~L~~L~L~~~~i~-~lp~~i~~l~~L~~L~l~~~~~l~~lp~~i~~l~~L~~L~l~ 647 (938)
.++.|+|++|.+.+.+|..++.+++|++|+|++|.+. .+|..++.+++|+.|+|++|.....+|..++++++|++|+++
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls 498 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN 498 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence 4788999999988888999999999999999999987 788889999999999999998777889999999999999999
Q ss_pred CCcccccCCccCCCC-CCCcccCeeEecC
Q 002308 648 GTRSLRYMPVGIGRL-TGLRTLGEFHVSA 675 (938)
Q Consensus 648 ~~~~~~~~p~~l~~l-~~L~~L~l~~~~~ 675 (938)
+|.+...+|..++.+ .++..+++.+|..
T Consensus 499 ~N~l~g~iP~~l~~~~~~~~~l~~~~N~~ 527 (623)
T PLN03150 499 GNSLSGRVPAALGGRLLHRASFNFTDNAG 527 (623)
T ss_pred CCcccccCChHHhhccccCceEEecCCcc
Confidence 998888888877653 3555666665543
No 62
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.55 E-value=1.9e-06 Score=96.73 Aligned_cols=193 Identities=17% Similarity=0.155 Sum_probs=114.8
Q ss_pred CceecchhhHHHHHHHHhccCcccCCCeEEEEEEccCCChHHHHHHHHhhhhhhhcccCeEEEEEeCCCCCHHHHHHHHH
Q 002308 150 EEICGRVGERNALLSMLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNHVEVKREFDKTLWVCVSETFDEFRIAKAML 229 (938)
Q Consensus 150 ~~~vGr~~~~~~l~~~l~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 229 (938)
..++|.+...+.+..++.... -.+.+.++|+.|+||||+|+.+++...-.. ++.. ..+..-...+.+.
T Consensus 15 ddVIGQe~vv~~L~~aI~~gr-----l~HAyLF~GPpGvGKTTlAriLAK~LnC~~------~~~~-~pCg~C~sC~~I~ 82 (702)
T PRK14960 15 NELVGQNHVSRALSSALERGR-----LHHAYLFTGTRGVGKTTIARILAKCLNCET------GVTS-TPCEVCATCKAVN 82 (702)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHHhCCCc------CCCC-CCCccCHHHHHHh
Confidence 578999999999999997532 357889999999999999999987421110 1000 0000000111111
Q ss_pred HHhc-----CCCCCCCcHHHHHHHHHH----HhcCceEEEEEecCCCCCccChhHHHHhhhCCCCCcEEEEEcCChh-hh
Q 002308 230 EALT-----GSTSNLNALQSLLISIDE----SIAGKRFLLVLDDVWDGDYIKWEPFYRCLKKGLHGSKILITTRKES-IV 299 (938)
Q Consensus 230 ~~l~-----~~~~~~~~~~~~~~~l~~----~l~~~~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtr~~~-v~ 299 (938)
..-. .........++....+.. -..+++-++|+|+++..+...+..+...+.....+.++|++|.+.. +.
T Consensus 83 ~g~hpDviEIDAAs~~~VddIReli~~~~y~P~~gk~KV~IIDEVh~LS~~A~NALLKtLEEPP~~v~FILaTtd~~kIp 162 (702)
T PRK14960 83 EGRFIDLIEIDAASRTKVEDTRELLDNVPYAPTQGRFKVYLIDEVHMLSTHSFNALLKTLEEPPEHVKFLFATTDPQKLP 162 (702)
T ss_pred cCCCCceEEecccccCCHHHHHHHHHHHhhhhhcCCcEEEEEechHhcCHHHHHHHHHHHhcCCCCcEEEEEECChHhhh
Confidence 0000 000001122222222211 1235666899999988766667778887776556667777776542 22
Q ss_pred hh-hcCCceEeCCCCChHHHHHHHHHhhcCCCCCchhhHHHHHHHHHHHhcCCChhHHHH
Q 002308 300 SM-MRSTDIISIEELAEEECWVLFKRLAFFGRSTEECEKLEQIGQRIARKCKGLPLAAKT 358 (938)
Q Consensus 300 ~~-~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~ 358 (938)
.. ......+++.+++.++..+.+.+.+...+.... .+....|++.++|.+..+..
T Consensus 163 ~TIlSRCq~feFkpLs~eEI~k~L~~Il~kEgI~id----~eAL~~IA~~S~GdLRdALn 218 (702)
T PRK14960 163 ITVISRCLQFTLRPLAVDEITKHLGAILEKEQIAAD----QDAIWQIAESAQGSLRDALS 218 (702)
T ss_pred HHHHHhhheeeccCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCCHHHHHH
Confidence 22 344678999999999999988887654332222 23366888999997755443
No 63
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=98.55 E-value=1.4e-07 Score=93.09 Aligned_cols=51 Identities=22% Similarity=0.305 Sum_probs=34.3
Q ss_pred ceecchhhHHHHHHHHhccCcccCCCeEEEEEEccCCChHHHHHHHHhhhhhhh
Q 002308 151 EICGRVGERNALLSMLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNHVEVK 204 (938)
Q Consensus 151 ~~vGr~~~~~~l~~~l~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~v~~~~~~~ 204 (938)
.|+||+++++++...+.... ....+.+.|+|++|+|||+|+++++......
T Consensus 1 ~fvgR~~e~~~l~~~l~~~~---~~~~~~~ll~G~~G~GKT~ll~~~~~~~~~~ 51 (185)
T PF13191_consen 1 QFVGREEEIERLRDLLDAAQ---SGSPRNLLLTGESGSGKTSLLRALLDRLAER 51 (185)
T ss_dssp --TT-HHHHHHHHHTTGGTS---S-----EEE-B-TTSSHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHH---cCCCcEEEEECCCCCCHHHHHHHHHHHHHhc
Confidence 38999999999999996222 4467999999999999999999999854333
No 64
>PRK04195 replication factor C large subunit; Provisional
Probab=98.55 E-value=8.5e-06 Score=92.59 Aligned_cols=248 Identities=15% Similarity=0.126 Sum_probs=139.0
Q ss_pred CCceecchhhHHHHHHHHhccCcccCCCeEEEEEEccCCChHHHHHHHHhhhhhhhcccCeEEEEEeCCCCCHHHHHHHH
Q 002308 149 EEEICGRVGERNALLSMLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNHVEVKREFDKTLWVCVSETFDEFRIAKAM 228 (938)
Q Consensus 149 ~~~~vGr~~~~~~l~~~l~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i 228 (938)
-..++|++...+++..|+..... +...+.+.|+|++|+||||+|+.+++.. .|+ ++-++++...+.. ....+
T Consensus 13 l~dlvg~~~~~~~l~~~l~~~~~--g~~~~~lLL~GppG~GKTtla~ala~el----~~~-~ielnasd~r~~~-~i~~~ 84 (482)
T PRK04195 13 LSDVVGNEKAKEQLREWIESWLK--GKPKKALLLYGPPGVGKTSLAHALANDY----GWE-VIELNASDQRTAD-VIERV 84 (482)
T ss_pred HHHhcCCHHHHHHHHHHHHHHhc--CCCCCeEEEECCCCCCHHHHHHHHHHHc----CCC-EEEEcccccccHH-HHHHH
Confidence 35699999999999999875432 2236789999999999999999999842 122 3334444432222 22333
Q ss_pred HHHhcCCCCCCCcHHHHHHHHHHHhcCceEEEEEecCCCCCc----cChhHHHHhhhCCCCCcEEEEEcCChh-hhh-h-
Q 002308 229 LEALTGSTSNLNALQSLLISIDESIAGKRFLLVLDDVWDGDY----IKWEPFYRCLKKGLHGSKILITTRKES-IVS-M- 301 (938)
Q Consensus 229 ~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~~----~~~~~l~~~l~~~~~gs~ilvTtr~~~-v~~-~- 301 (938)
+....... .....++-+||+|+++.... ..+..+...+.. .+..||+|+.+.. ... .
T Consensus 85 i~~~~~~~--------------sl~~~~~kvIiIDEaD~L~~~~d~~~~~aL~~~l~~--~~~~iIli~n~~~~~~~k~L 148 (482)
T PRK04195 85 AGEAATSG--------------SLFGARRKLILLDEVDGIHGNEDRGGARAILELIKK--AKQPIILTANDPYDPSLREL 148 (482)
T ss_pred HHHhhccC--------------cccCCCCeEEEEecCcccccccchhHHHHHHHHHHc--CCCCEEEeccCccccchhhH
Confidence 32221100 00113677999999976432 234555555553 3344666665432 111 1
Q ss_pred hcCCceEeCCCCChHHHHHHHHHhhcCCCCCchhhHHHHHHHHHHHhcCCChhHHHHHHhhhcCCC---CHHHHHHHHhc
Q 002308 302 MRSTDIISIEELAEEECWVLFKRLAFFGRSTEECEKLEQIGQRIARKCKGLPLAAKTMGSLMSSKK---TEEEWKRILNS 378 (938)
Q Consensus 302 ~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~~~~~l~~~~---~~~~w~~~~~~ 378 (938)
......+.+.+++.++....+...+...+.... .+....|++.++|....+......+.... +...-..+..
T Consensus 149 rsr~~~I~f~~~~~~~i~~~L~~i~~~egi~i~----~eaL~~Ia~~s~GDlR~ain~Lq~~a~~~~~it~~~v~~~~~- 223 (482)
T PRK04195 149 RNACLMIEFKRLSTRSIVPVLKRICRKEGIECD----DEALKEIAERSGGDLRSAINDLQAIAEGYGKLTLEDVKTLGR- 223 (482)
T ss_pred hccceEEEecCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCCHHHHHHHHHHHhcCCCCCcHHHHHHhhc-
Confidence 233568999999999999988887654333222 24477889999987766654443333221 2332222221
Q ss_pred cccccccccccchhhHHhhhc-cCChhHHHHHhHhccCCCCcccChHHHHHHHHHcCCCcc
Q 002308 379 DLWKVEEIEKGVLTPLWLSYN-DLPSRVKRCFSYCAVFPKDYNIKKDELITLWMAQGYLSA 438 (938)
Q Consensus 379 ~~~~~~~~~~~~~~~l~~sy~-~L~~~~k~~f~~~~~fp~~~~i~~~~li~~w~a~g~i~~ 438 (938)
.+....++.++..-+. .-.......+.. ..++. ..+-.|+.+.+...
T Consensus 224 -----~d~~~~if~~l~~i~~~k~~~~a~~~~~~-------~~~~~-~~i~~~l~en~~~~ 271 (482)
T PRK04195 224 -----RDREESIFDALDAVFKARNADQALEASYD-------VDEDP-DDLIEWIDENIPKE 271 (482)
T ss_pred -----CCCCCCHHHHHHHHHCCCCHHHHHHHHHc-------ccCCH-HHHHHHHHhccccc
Confidence 1122345555554443 222222222211 12333 34668999888754
No 65
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.54 E-value=3.5e-07 Score=102.62 Aligned_cols=196 Identities=21% Similarity=0.200 Sum_probs=114.9
Q ss_pred CceecchhhHHHHHHHHhccCcccCCCeEEEEEEccCCChHHHHHHHHhhhhhhhcccCeEEEEEeCCCCCHHHHHHHHH
Q 002308 150 EEICGRVGERNALLSMLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNHVEVKREFDKTLWVCVSETFDEFRIAKAML 229 (938)
Q Consensus 150 ~~~vGr~~~~~~l~~~l~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 229 (938)
..++|.+...+.+..++.... -.+.+.++|++|+||||+|+.+++.....+.+...+|.|.+.. .+......-+
T Consensus 14 ~dvvGq~~v~~~L~~~i~~~~-----l~ha~Lf~GppGtGKTTlA~~lA~~l~c~~~~~~~cg~C~sc~-~i~~~~h~dv 87 (504)
T PRK14963 14 DEVVGQEHVKEVLLAALRQGR-----LGHAYLFSGPRGVGKTTTARLIAMAVNCSGEDPKPCGECESCL-AVRRGAHPDV 87 (504)
T ss_pred HHhcChHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHHHhccCCCCCCCCcChhhH-HHhcCCCCce
Confidence 468999999899988887532 3567799999999999999999885322222222223221110 0000000000
Q ss_pred HHhcCCCCCCCcHHHHH---HHHHH-HhcCceEEEEEecCCCCCccChhHHHHhhhCCCCCcEEEEEcCC-hhhhhhh-c
Q 002308 230 EALTGSTSNLNALQSLL---ISIDE-SIAGKRFLLVLDDVWDGDYIKWEPFYRCLKKGLHGSKILITTRK-ESIVSMM-R 303 (938)
Q Consensus 230 ~~l~~~~~~~~~~~~~~---~~l~~-~l~~~~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtr~-~~v~~~~-~ 303 (938)
..+.. ......+... ..+.. -..+++-++|+|+++......+..+...+........+|++|.. ..+...+ .
T Consensus 88 ~el~~--~~~~~vd~iR~l~~~~~~~p~~~~~kVVIIDEad~ls~~a~naLLk~LEep~~~t~~Il~t~~~~kl~~~I~S 165 (504)
T PRK14963 88 LEIDA--ASNNSVEDVRDLREKVLLAPLRGGRKVYILDEAHMMSKSAFNALLKTLEEPPEHVIFILATTEPEKMPPTILS 165 (504)
T ss_pred EEecc--cccCCHHHHHHHHHHHhhccccCCCeEEEEECccccCHHHHHHHHHHHHhCCCCEEEEEEcCChhhCChHHhc
Confidence 00000 0111122221 11111 11245668999999877666677788887765555555555543 3333332 3
Q ss_pred CCceEeCCCCChHHHHHHHHHhhcCCCCCchhhHHHHHHHHHHHhcCCChhHHH
Q 002308 304 STDIISIEELAEEECWVLFKRLAFFGRSTEECEKLEQIGQRIARKCKGLPLAAK 357 (938)
Q Consensus 304 ~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~ 357 (938)
....+++.+++.++..+.+.+.+...+.... .+....|++.++|.+--+.
T Consensus 166 Rc~~~~f~~ls~~el~~~L~~i~~~egi~i~----~~Al~~ia~~s~GdlR~al 215 (504)
T PRK14963 166 RTQHFRFRRLTEEEIAGKLRRLLEAEGREAE----PEALQLVARLADGAMRDAE 215 (504)
T ss_pred ceEEEEecCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCCHHHHH
Confidence 3568999999999999999987654332222 2346789999999886553
No 66
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=98.54 E-value=1.9e-06 Score=92.27 Aligned_cols=180 Identities=14% Similarity=0.182 Sum_probs=117.4
Q ss_pred CceecchhhHHHHHHHHhccCcccCCCeEEEEEEccCCChHHHHHHHHhhhh----hhhcccCeEEEEEe-CCCCCHHHH
Q 002308 150 EEICGRVGERNALLSMLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNHV----EVKREFDKTLWVCV-SETFDEFRI 224 (938)
Q Consensus 150 ~~~vGr~~~~~~l~~~l~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~v~~~~----~~~~~f~~~~wv~~-~~~~~~~~~ 224 (938)
..++|.+...+.+..++... .-.+...++|+.|+||||+|+.++... ....|.|...|... +....+++
T Consensus 4 ~~i~g~~~~~~~l~~~~~~~-----~~~ha~Lf~G~~G~Gk~~la~~~a~~l~c~~~~~~h~D~~~~~~~~~~~i~v~~- 77 (313)
T PRK05564 4 HTIIGHENIKNRIKNSIIKN-----RFSHAHIIVGEDGIGKSLLAKEIALKILGKSQQREYVDIIEFKPINKKSIGVDD- 77 (313)
T ss_pred hhccCcHHHHHHHHHHHHcC-----CCCceEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCeEEeccccCCCCCHHH-
Confidence 45789988899999998643 345677899999999999999998842 12234455445432 22223223
Q ss_pred HHHHHHHhcCCCCCCCcHHHHHHHHHHHhcCceEEEEEecCCCCCccChhHHHHhhhCCCCCcEEEEEcCChhhh-hh-h
Q 002308 225 AKAMLEALTGSTSNLNALQSLLISIDESIAGKRFLLVLDDVWDGDYIKWEPFYRCLKKGLHGSKILITTRKESIV-SM-M 302 (938)
Q Consensus 225 ~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtr~~~v~-~~-~ 302 (938)
.+++.+.+...+ ..+++-++|+|+++......++.+...+.....++.+|++|.+.+.. .. .
T Consensus 78 ir~~~~~~~~~p----------------~~~~~kv~iI~~ad~m~~~a~naLLK~LEepp~~t~~il~~~~~~~ll~TI~ 141 (313)
T PRK05564 78 IRNIIEEVNKKP----------------YEGDKKVIIIYNSEKMTEQAQNAFLKTIEEPPKGVFIILLCENLEQILDTIK 141 (313)
T ss_pred HHHHHHHHhcCc----------------ccCCceEEEEechhhcCHHHHHHHHHHhcCCCCCeEEEEEeCChHhCcHHHH
Confidence 222222222110 12455677888887666667888999998877888888888765422 22 2
Q ss_pred cCCceEeCCCCChHHHHHHHHHhhcCCCCCchhhHHHHHHHHHHHhcCCChhHHHHH
Q 002308 303 RSTDIISIEELAEEECWVLFKRLAFFGRSTEECEKLEQIGQRIARKCKGLPLAAKTM 359 (938)
Q Consensus 303 ~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~~ 359 (938)
.....+.+.++++++....+.....+ .. .+.++.++..++|.|.-+...
T Consensus 142 SRc~~~~~~~~~~~~~~~~l~~~~~~----~~----~~~~~~l~~~~~g~~~~a~~~ 190 (313)
T PRK05564 142 SRCQIYKLNRLSKEEIEKFISYKYND----IK----EEEKKSAIAFSDGIPGKVEKF 190 (313)
T ss_pred hhceeeeCCCcCHHHHHHHHHHHhcC----CC----HHHHHHHHHHcCCCHHHHHHH
Confidence 34678999999999998887665321 11 122667889999988755433
No 67
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.53 E-value=1.8e-06 Score=96.68 Aligned_cols=197 Identities=14% Similarity=0.150 Sum_probs=115.1
Q ss_pred CceecchhhHHHHHHHHhccCcccCCCeEEEEEEccCCChHHHHHHHHhhhhhhhcc--cCeEEEEEeCCCCCHHHHHHH
Q 002308 150 EEICGRVGERNALLSMLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNHVEVKRE--FDKTLWVCVSETFDEFRIAKA 227 (938)
Q Consensus 150 ~~~vGr~~~~~~l~~~l~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~--f~~~~wv~~~~~~~~~~~~~~ 227 (938)
.++||.+..++.|..++.... -.+.+.++|+.|+||||+|+.+.+...-... -.... +..+..-.....
T Consensus 16 ddVIGQe~vv~~L~~al~~gR-----LpHA~LFtGP~GvGKTTLAriLAkaLnC~~p~~~~g~~----~~PCG~C~sC~~ 86 (700)
T PRK12323 16 TTLVGQEHVVRALTHALEQQR-----LHHAYLFTGTRGVGKTTLSRILAKSLNCTGADGEGGIT----AQPCGQCRACTE 86 (700)
T ss_pred HHHcCcHHHHHHHHHHHHhCC-----CceEEEEECCCCCCHHHHHHHHHHHhcCCCccccccCC----CCCCcccHHHHH
Confidence 568999999999999997532 4567789999999999999999874321000 00000 000000011111
Q ss_pred HHHH-----hcCCCCCCCcHHHHHHHHHHH----hcCceEEEEEecCCCCCccChhHHHHhhhCCCCCcEEE-EEcCChh
Q 002308 228 MLEA-----LTGSTSNLNALQSLLISIDES----IAGKRFLLVLDDVWDGDYIKWEPFYRCLKKGLHGSKIL-ITTRKES 297 (938)
Q Consensus 228 i~~~-----l~~~~~~~~~~~~~~~~l~~~----l~~~~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~il-vTtr~~~ 297 (938)
|... +.........++++...+... ..++.-++|||+++......++.++..+..-..+.++| +||....
T Consensus 87 I~aG~hpDviEIdAas~~gVDdIReLie~~~~~P~~gr~KViIIDEah~Ls~~AaNALLKTLEEPP~~v~FILaTtep~k 166 (700)
T PRK12323 87 IDAGRFVDYIEMDAASNRGVDEMAQLLDKAVYAPTAGRFKVYMIDEVHMLTNHAFNAMLKTLEEPPEHVKFILATTDPQK 166 (700)
T ss_pred HHcCCCCcceEecccccCCHHHHHHHHHHHHhchhcCCceEEEEEChHhcCHHHHHHHHHhhccCCCCceEEEEeCChHh
Confidence 1100 000000112233333222221 13556699999998877677777887776644555555 4554444
Q ss_pred hhhh-hcCCceEeCCCCChHHHHHHHHHhhcCCCCCchhhHHHHHHHHHHHhcCCChhHHHHH
Q 002308 298 IVSM-MRSTDIISIEELAEEECWVLFKRLAFFGRSTEECEKLEQIGQRIARKCKGLPLAAKTM 359 (938)
Q Consensus 298 v~~~-~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~~ 359 (938)
+... .+.+..+.+..++.++..+.+.+.+...+.... .+..+.|++.++|.|.....+
T Consensus 167 LlpTIrSRCq~f~f~~ls~eei~~~L~~Il~~Egi~~d----~eAL~~IA~~A~Gs~RdALsL 225 (700)
T PRK12323 167 IPVTVLSRCLQFNLKQMPPGHIVSHLDAILGEEGIAHE----VNALRLLAQAAQGSMRDALSL 225 (700)
T ss_pred hhhHHHHHHHhcccCCCChHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCCHHHHHHH
Confidence 4433 234678999999999999988876543222111 233578899999998755444
No 68
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=98.53 E-value=8.7e-07 Score=83.83 Aligned_cols=124 Identities=19% Similarity=0.162 Sum_probs=74.1
Q ss_pred ecchhhHHHHHHHHhccCcccCCCeEEEEEEccCCChHHHHHHHHhhhhhhhcccCeEEEEEeCCCCCHHHHHHHHHHHh
Q 002308 153 CGRVGERNALLSMLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNHVEVKREFDKTLWVCVSETFDEFRIAKAMLEAL 232 (938)
Q Consensus 153 vGr~~~~~~l~~~l~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l 232 (938)
+|++..++.+...+... ..+.+.|+|++|+|||++++.+++... ..-..++++.+............+...
T Consensus 1 ~~~~~~~~~i~~~~~~~------~~~~v~i~G~~G~GKT~l~~~i~~~~~--~~~~~v~~~~~~~~~~~~~~~~~~~~~- 71 (151)
T cd00009 1 VGQEEAIEALREALELP------PPKNLLLYGPPGTGKTTLARAIANELF--RPGAPFLYLNASDLLEGLVVAELFGHF- 71 (151)
T ss_pred CchHHHHHHHHHHHhCC------CCCeEEEECCCCCCHHHHHHHHHHHhh--cCCCCeEEEehhhhhhhhHHHHHhhhh-
Confidence 47888889998888642 346899999999999999999998532 222456666655433322211111100
Q ss_pred cCCCCCCCcHHHHHHHHHHHhcCceEEEEEecCCCCCccChhHHHHhhhCC------CCCcEEEEEcCCh
Q 002308 233 TGSTSNLNALQSLLISIDESIAGKRFLLVLDDVWDGDYIKWEPFYRCLKKG------LHGSKILITTRKE 296 (938)
Q Consensus 233 ~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~~~~~~~l~~~l~~~------~~gs~ilvTtr~~ 296 (938)
............++.++|+||++.........+...+... ..+..||+||...
T Consensus 72 -----------~~~~~~~~~~~~~~~~lilDe~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ii~~~~~~ 130 (151)
T cd00009 72 -----------LVRLLFELAEKAKPGVLFIDEIDSLSRGAQNALLRVLETLNDLRIDRENVRVIGATNRP 130 (151)
T ss_pred -----------hHhHHHHhhccCCCeEEEEeChhhhhHHHHHHHHHHHHhcCceeccCCCeEEEEecCcc
Confidence 0011112223456789999999864222333444444432 3577888888765
No 69
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=98.52 E-value=2.9e-05 Score=90.04 Aligned_cols=203 Identities=19% Similarity=0.141 Sum_probs=118.9
Q ss_pred CceecchhhHHHHHHHHhccCcccCCCeEEEEEEccCCChHHHHHHHHhhhhhhhccc---CeEEEEEeCC---CCCHHH
Q 002308 150 EEICGRVGERNALLSMLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNHVEVKREF---DKTLWVCVSE---TFDEFR 223 (938)
Q Consensus 150 ~~~vGr~~~~~~l~~~l~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f---~~~~wv~~~~---~~~~~~ 223 (938)
+.++|++..+..+.+.+.. .....+.|+|++|+||||+|+.+++.......+ ...-|+.+.. ..+...
T Consensus 154 ~~iiGqs~~~~~l~~~ia~------~~~~~vlL~Gp~GtGKTTLAr~i~~~~~~~~~~~~~~~~~fv~i~~~~l~~d~~~ 227 (615)
T TIGR02903 154 SEIVGQERAIKALLAKVAS------PFPQHIILYGPPGVGKTTAARLALEEAKKLKHTPFAEDAPFVEVDGTTLRWDPRE 227 (615)
T ss_pred HhceeCcHHHHHHHHHHhc------CCCCeEEEECCCCCCHHHHHHHHHHhhhhccCCcccCCCCeEEEechhccCCHHH
Confidence 4689999999988877753 234579999999999999999998864333222 1233444432 112222
Q ss_pred HHHHH---------------HHHhcCCC----------------CCCCc-HHHHHHHHHHHhcCceEEEEEecCCCCCcc
Q 002308 224 IAKAM---------------LEALTGST----------------SNLNA-LQSLLISIDESIAGKRFLLVLDDVWDGDYI 271 (938)
Q Consensus 224 ~~~~i---------------~~~l~~~~----------------~~~~~-~~~~~~~l~~~l~~~~~LlVlDdv~~~~~~ 271 (938)
+...+ +...+... ++... -...+..+.+.+.++++.++-|+.|..+..
T Consensus 228 i~~~llg~~~~~~~~~a~~~l~~~gl~~~~~g~v~~asgGvL~LDEi~~Ld~~~Q~~Ll~~Le~~~v~~~~~~~~~~~~~ 307 (615)
T TIGR02903 228 VTNPLLGSVHDPIYQGARRDLAETGVPEPKTGLVTDAHGGVLFIDEIGELDPLLQNKLLKVLEDKRVEFSSSYYDPDDPN 307 (615)
T ss_pred HhHHhcCCccHHHHHHHHHHHHHcCCCchhcCchhhcCCCeEEEeccccCCHHHHHHHHHHHhhCeEEeecceeccCCcc
Confidence 21111 11111000 00111 123466777888888888888877777666
Q ss_pred ChhHHHHhhhCCCCCcEEEE--EcCChhh-hhhh-cCCceEeCCCCChHHHHHHHHHhhcCCCCCchhhHHHHHHHHHHH
Q 002308 272 KWEPFYRCLKKGLHGSKILI--TTRKESI-VSMM-RSTDIISIEELAEEECWVLFKRLAFFGRSTEECEKLEQIGQRIAR 347 (938)
Q Consensus 272 ~~~~l~~~l~~~~~gs~ilv--Ttr~~~v-~~~~-~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~ 347 (938)
.|+.+...+....+...|++ ||++... .... .....+.+.+++.++.++++.+.+..... ... .++.+.|.+
T Consensus 308 ~~~~ik~~~~~~~~~~~VLI~aTt~~~~~l~~aLrSR~~~i~~~pls~edi~~Il~~~a~~~~v-~ls---~eal~~L~~ 383 (615)
T TIGR02903 308 VPKYIKKLFEEGAPADFVLIGATTRDPEEINPALRSRCAEVFFEPLTPEDIALIVLNAAEKINV-HLA---AGVEELIAR 383 (615)
T ss_pred cchhhhhhcccCccceEEEEEeccccccccCHHHHhceeEEEeCCCCHHHHHHHHHHHHHHcCC-CCC---HHHHHHHHH
Confidence 78888777776666655555 5665432 1111 22346788999999999999987643221 111 233445555
Q ss_pred hcCCChhHHHHHHhh
Q 002308 348 KCKGLPLAAKTMGSL 362 (938)
Q Consensus 348 ~~~g~Plai~~~~~~ 362 (938)
.+..-+.++..++..
T Consensus 384 ys~~gRraln~L~~~ 398 (615)
T TIGR02903 384 YTIEGRKAVNILADV 398 (615)
T ss_pred CCCcHHHHHHHHHHH
Confidence 554445555555443
No 70
>PLN03025 replication factor C subunit; Provisional
Probab=98.50 E-value=3e-06 Score=90.87 Aligned_cols=183 Identities=12% Similarity=0.111 Sum_probs=108.1
Q ss_pred CceecchhhHHHHHHHHhccCcccCCCeEEEEEEccCCChHHHHHHHHhhhhhhhcccC-eEEEEEeCCCCCHHHHHHHH
Q 002308 150 EEICGRVGERNALLSMLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNHVEVKREFD-KTLWVCVSETFDEFRIAKAM 228 (938)
Q Consensus 150 ~~~vGr~~~~~~l~~~l~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~-~~~wv~~~~~~~~~~~~~~i 228 (938)
..++|.+..++.+..++... ....+.++|++|+||||+|..+++.. ....|. .++-++.+...+.. ..+++
T Consensus 13 ~~~~g~~~~~~~L~~~~~~~------~~~~lll~Gp~G~GKTtla~~la~~l-~~~~~~~~~~eln~sd~~~~~-~vr~~ 84 (319)
T PLN03025 13 DDIVGNEDAVSRLQVIARDG------NMPNLILSGPPGTGKTTSILALAHEL-LGPNYKEAVLELNASDDRGID-VVRNK 84 (319)
T ss_pred HHhcCcHHHHHHHHHHHhcC------CCceEEEECCCCCCHHHHHHHHHHHH-hcccCccceeeecccccccHH-HHHHH
Confidence 46889998888888877632 33447799999999999999998842 122232 12222223222222 12222
Q ss_pred HHHhcCCCCCCCcHHHHHHHHHHHhcCceEEEEEecCCCCCccChhHHHHhhhCCCCCcEEEEEcCCh-hhhhh-hcCCc
Q 002308 229 LEALTGSTSNLNALQSLLISIDESIAGKRFLLVLDDVWDGDYIKWEPFYRCLKKGLHGSKILITTRKE-SIVSM-MRSTD 306 (938)
Q Consensus 229 ~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtr~~-~v~~~-~~~~~ 306 (938)
++.+...... .-.++.-++|+|+++.........+...+......+++|+++... .+... .....
T Consensus 85 i~~~~~~~~~-------------~~~~~~kviiiDE~d~lt~~aq~aL~~~lE~~~~~t~~il~~n~~~~i~~~L~SRc~ 151 (319)
T PLN03025 85 IKMFAQKKVT-------------LPPGRHKIVILDEADSMTSGAQQALRRTMEIYSNTTRFALACNTSSKIIEPIQSRCA 151 (319)
T ss_pred HHHHHhcccc-------------CCCCCeEEEEEechhhcCHHHHHHHHHHHhcccCCceEEEEeCCccccchhHHHhhh
Confidence 2221100000 002456699999998765555555666665444566777766543 22221 12345
Q ss_pred eEeCCCCChHHHHHHHHHhhcCCCCCchhhHHHHHHHHHHHhcCCChhHHH
Q 002308 307 IISIEELAEEECWVLFKRLAFFGRSTEECEKLEQIGQRIARKCKGLPLAAK 357 (938)
Q Consensus 307 ~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~ 357 (938)
.+++.++++++....+...+...+.... .+....|++.++|..-.+.
T Consensus 152 ~i~f~~l~~~~l~~~L~~i~~~egi~i~----~~~l~~i~~~~~gDlR~al 198 (319)
T PLN03025 152 IVRFSRLSDQEILGRLMKVVEAEKVPYV----PEGLEAIIFTADGDMRQAL 198 (319)
T ss_pred cccCCCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCCHHHHH
Confidence 7999999999999988887654332222 2346788899988764443
No 71
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.48 E-value=4.3e-06 Score=94.07 Aligned_cols=183 Identities=19% Similarity=0.205 Sum_probs=113.5
Q ss_pred CceecchhhHHHHHHHHhccCcccCCCeEEEEEEccCCChHHHHHHHHhhhhhhh-------------------cccCeE
Q 002308 150 EEICGRVGERNALLSMLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNHVEVK-------------------REFDKT 210 (938)
Q Consensus 150 ~~~vGr~~~~~~l~~~l~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~v~~~~~~~-------------------~~f~~~ 210 (938)
..++|.+..++.+...+... ...+.+.++|+.|+||||+|+.+++...-. ..|...
T Consensus 16 ~diiGq~~~v~~L~~~i~~~-----rl~ha~Lf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~sC~~i~~~~~~dl 90 (546)
T PRK14957 16 AEVAGQQHALNSLVHALETQ-----KVHHAYLFTGTRGVGKTTLGRLLAKCLNCKTGVTAEPCNKCENCVAINNNSFIDL 90 (546)
T ss_pred HHhcCcHHHHHHHHHHHHcC-----CCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHHHHHHhcCCCCce
Confidence 56899999999999988743 234667899999999999999998742110 012223
Q ss_pred EEEEeCCCCCHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHH-HhcCceEEEEEecCCCCCccChhHHHHhhhCCCCCcEE
Q 002308 211 LWVCVSETFDEFRIAKAMLEALTGSTSNLNALQSLLISIDE-SIAGKRFLLVLDDVWDGDYIKWEPFYRCLKKGLHGSKI 289 (938)
Q Consensus 211 ~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~-~l~~~~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~i 289 (938)
+++.......++ +..++...+.. -..+++-++|+|+++......++.++..+......+.+
T Consensus 91 ieidaas~~gvd------------------~ir~ii~~~~~~p~~g~~kViIIDEa~~ls~~a~naLLK~LEepp~~v~f 152 (546)
T PRK14957 91 IEIDAASRTGVE------------------ETKEILDNIQYMPSQGRYKVYLIDEVHMLSKQSFNALLKTLEEPPEYVKF 152 (546)
T ss_pred EEeecccccCHH------------------HHHHHHHHHHhhhhcCCcEEEEEechhhccHHHHHHHHHHHhcCCCCceE
Confidence 333222222221 11222222221 12356679999999877666778888888775556655
Q ss_pred EE-EcCChhhhhh-hcCCceEeCCCCChHHHHHHHHHhhcCCCCCchhhHHHHHHHHHHHhcCCChh-HHHHH
Q 002308 290 LI-TTRKESIVSM-MRSTDIISIEELAEEECWVLFKRLAFFGRSTEECEKLEQIGQRIARKCKGLPL-AAKTM 359 (938)
Q Consensus 290 lv-Ttr~~~v~~~-~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl-ai~~~ 359 (938)
|+ ||....+... ......+++.+++.++....+...+...+.... ......|++.++|.+. |+..+
T Consensus 153 IL~Ttd~~kil~tI~SRc~~~~f~~Ls~~eI~~~L~~il~~egi~~e----~~Al~~Ia~~s~GdlR~alnlL 221 (546)
T PRK14957 153 ILATTDYHKIPVTILSRCIQLHLKHISQADIKDQLKIILAKENINSD----EQSLEYIAYHAKGSLRDALSLL 221 (546)
T ss_pred EEEECChhhhhhhHHHheeeEEeCCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCCHHHHHHHH
Confidence 54 5443333322 344678999999999988888775543222111 2235688889998664 44444
No 72
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=98.47 E-value=6.4e-06 Score=89.24 Aligned_cols=182 Identities=13% Similarity=0.095 Sum_probs=108.0
Q ss_pred CceecchhhHHHHHHHHhccCcccCCCeEEEEEEccCCChHHHHHHHHhhhhhhhcccCeEEEEEe--CCCCCHHHHHHH
Q 002308 150 EEICGRVGERNALLSMLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNHVEVKREFDKTLWVCV--SETFDEFRIAKA 227 (938)
Q Consensus 150 ~~~vGr~~~~~~l~~~l~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~--~~~~~~~~~~~~ 227 (938)
..++|++..++.+..++... ..+.+.++|++|+||||+|+.+++.. ....+.. .++.+ +....... ..+
T Consensus 17 ~~~~g~~~~~~~l~~~i~~~------~~~~~ll~G~~G~GKt~~~~~l~~~l-~~~~~~~-~~i~~~~~~~~~~~~-~~~ 87 (319)
T PRK00440 17 DEIVGQEEIVERLKSYVKEK------NMPHLLFAGPPGTGKTTAALALAREL-YGEDWRE-NFLELNASDERGIDV-IRN 87 (319)
T ss_pred HHhcCcHHHHHHHHHHHhCC------CCCeEEEECCCCCCHHHHHHHHHHHH-cCCcccc-ceEEeccccccchHH-HHH
Confidence 46899999999999988642 23457999999999999999998842 1222211 12222 22222111 111
Q ss_pred HHHHhcCCCCCCCcHHHHHHHHHHHhcCceEEEEEecCCCCCccChhHHHHhhhCCCCCcEEEEEcCCh-hhhhh-hcCC
Q 002308 228 MLEALTGSTSNLNALQSLLISIDESIAGKRFLLVLDDVWDGDYIKWEPFYRCLKKGLHGSKILITTRKE-SIVSM-MRST 305 (938)
Q Consensus 228 i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtr~~-~v~~~-~~~~ 305 (938)
.+..+....+ .....+-++|+|+++.........+...+......+.+|+++... .+... ....
T Consensus 88 ~i~~~~~~~~--------------~~~~~~~vviiDe~~~l~~~~~~~L~~~le~~~~~~~lIl~~~~~~~l~~~l~sr~ 153 (319)
T PRK00440 88 KIKEFARTAP--------------VGGAPFKIIFLDEADNLTSDAQQALRRTMEMYSQNTRFILSCNYSSKIIDPIQSRC 153 (319)
T ss_pred HHHHHHhcCC--------------CCCCCceEEEEeCcccCCHHHHHHHHHHHhcCCCCCeEEEEeCCccccchhHHHHh
Confidence 1111111000 001235689999987654444556666666555566777766432 22111 1224
Q ss_pred ceEeCCCCChHHHHHHHHHhhcCCCCCchhhHHHHHHHHHHHhcCCChhHHHH
Q 002308 306 DIISIEELAEEECWVLFKRLAFFGRSTEECEKLEQIGQRIARKCKGLPLAAKT 358 (938)
Q Consensus 306 ~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~ 358 (938)
..+++.+++.++....+...+...+..-. .+....+++.++|.+.-+..
T Consensus 154 ~~~~~~~l~~~ei~~~l~~~~~~~~~~i~----~~al~~l~~~~~gd~r~~~~ 202 (319)
T PRK00440 154 AVFRFSPLKKEAVAERLRYIAENEGIEIT----DDALEAIYYVSEGDMRKAIN 202 (319)
T ss_pred heeeeCCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCCHHHHHH
Confidence 57899999999999888887654332222 23467888999998766433
No 73
>PRK08727 hypothetical protein; Validated
Probab=98.46 E-value=5.8e-06 Score=83.99 Aligned_cols=149 Identities=15% Similarity=0.135 Sum_probs=89.4
Q ss_pred eEEEEEEccCCChHHHHHHHHhhhhhhhcccCeEEEEEeCCCCCHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHhcCc
Q 002308 177 LHIISIVGMGGIGKTTLAQLACNHVEVKREFDKTLWVCVSETFDEFRIAKAMLEALTGSTSNLNALQSLLISIDESIAGK 256 (938)
Q Consensus 177 ~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~ 256 (938)
...+.|+|..|+|||+|++++++. .......+.|+++.+ ....+.. .+. .+ .+
T Consensus 41 ~~~l~l~G~~G~GKThL~~a~~~~--~~~~~~~~~y~~~~~------~~~~~~~-----------------~~~-~l-~~ 93 (233)
T PRK08727 41 SDWLYLSGPAGTGKTHLALALCAA--AEQAGRSSAYLPLQA------AAGRLRD-----------------ALE-AL-EG 93 (233)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH--HHHcCCcEEEEeHHH------hhhhHHH-----------------HHH-HH-hc
Confidence 346999999999999999999885 333333566776432 1111110 111 11 12
Q ss_pred eEEEEEecCCCCC-ccChhH-HHHhhhCC-CCCcEEEEEcCCh---------hhhhhhcCCceEeCCCCChHHHHHHHHH
Q 002308 257 RFLLVLDDVWDGD-YIKWEP-FYRCLKKG-LHGSKILITTRKE---------SIVSMMRSTDIISIEELAEEECWVLFKR 324 (938)
Q Consensus 257 ~~LlVlDdv~~~~-~~~~~~-l~~~l~~~-~~gs~ilvTtr~~---------~v~~~~~~~~~~~l~~L~~~~~~~lf~~ 324 (938)
.-+||+||+.... ...|.. +...+... ..|..||+|++.. ++...+.....+++.+++.++..+++.+
T Consensus 94 ~dlLiIDDi~~l~~~~~~~~~lf~l~n~~~~~~~~vI~ts~~~p~~l~~~~~dL~SRl~~~~~~~l~~~~~e~~~~iL~~ 173 (233)
T PRK08727 94 RSLVALDGLESIAGQREDEVALFDFHNRARAAGITLLYTARQMPDGLALVLPDLRSRLAQCIRIGLPVLDDVARAAVLRE 173 (233)
T ss_pred CCEEEEeCcccccCChHHHHHHHHHHHHHHHcCCeEEEECCCChhhhhhhhHHHHHHHhcCceEEecCCCHHHHHHHHHH
Confidence 3489999996532 123432 33333221 3466699999853 2222334456899999999999999998
Q ss_pred hhcCCCCCchhhHHHHHHHHHHHhcCCChhHH
Q 002308 325 LAFFGRSTEECEKLEQIGQRIARKCKGLPLAA 356 (938)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai 356 (938)
++...+-.. .++....|++.+.|-.-.+
T Consensus 174 ~a~~~~l~l----~~e~~~~La~~~~rd~r~~ 201 (233)
T PRK08727 174 RAQRRGLAL----DEAAIDWLLTHGERELAGL 201 (233)
T ss_pred HHHHcCCCC----CHHHHHHHHHhCCCCHHHH
Confidence 775432212 2334667888887665544
No 74
>PF13173 AAA_14: AAA domain
Probab=98.46 E-value=9.5e-07 Score=80.61 Aligned_cols=120 Identities=23% Similarity=0.239 Sum_probs=79.0
Q ss_pred eEEEEEEccCCChHHHHHHHHhhhhhhhcccCeEEEEEeCCCCCHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHhcCc
Q 002308 177 LHIISIVGMGGIGKTTLAQLACNHVEVKREFDKTLWVCVSETFDEFRIAKAMLEALTGSTSNLNALQSLLISIDESIAGK 256 (938)
Q Consensus 177 ~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~ 256 (938)
.+++.|.|+.|+||||++++++.+.. .-..++|++............ + ..+.+.+....+
T Consensus 2 ~~~~~l~G~R~vGKTtll~~~~~~~~---~~~~~~yi~~~~~~~~~~~~~----------------~-~~~~~~~~~~~~ 61 (128)
T PF13173_consen 2 RKIIILTGPRGVGKTTLLKQLAKDLL---PPENILYINFDDPRDRRLADP----------------D-LLEYFLELIKPG 61 (128)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhc---ccccceeeccCCHHHHHHhhh----------------h-hHHHHHHhhccC
Confidence 36899999999999999999987532 335577777655322110000 0 122233333346
Q ss_pred eEEEEEecCCCCCccChhHHHHhhhCCCCCcEEEEEcCChhhhhh------hcCCceEeCCCCChHHH
Q 002308 257 RFLLVLDDVWDGDYIKWEPFYRCLKKGLHGSKILITTRKESIVSM------MRSTDIISIEELAEEEC 318 (938)
Q Consensus 257 ~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtr~~~v~~~------~~~~~~~~l~~L~~~~~ 318 (938)
+.+|+||++... ..|......+....+..+|++|+.+...... .+....+++.||+-.|.
T Consensus 62 ~~~i~iDEiq~~--~~~~~~lk~l~d~~~~~~ii~tgS~~~~l~~~~~~~l~gr~~~~~l~Plsf~E~ 127 (128)
T PF13173_consen 62 KKYIFIDEIQYL--PDWEDALKFLVDNGPNIKIILTGSSSSLLSKDIAESLAGRVIEIELYPLSFREF 127 (128)
T ss_pred CcEEEEehhhhh--ccHHHHHHHHHHhccCceEEEEccchHHHhhcccccCCCeEEEEEECCCCHHHh
Confidence 788999999765 4687777777665567889999998765532 12234789999987764
No 75
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=98.45 E-value=4.3e-06 Score=95.50 Aligned_cols=196 Identities=16% Similarity=0.158 Sum_probs=116.3
Q ss_pred CCceecchhhHHHHHHHHhccCcccCCCeEEEEEEccCCChHHHHHHHHhhhhhhhcccCeEEEEEeCCCCCHHHHHHHH
Q 002308 149 EEEICGRVGERNALLSMLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNHVEVKREFDKTLWVCVSETFDEFRIAKAM 228 (938)
Q Consensus 149 ~~~~vGr~~~~~~l~~~l~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i 228 (938)
-..+||.+..++.+...+.... -.+.+.++|+.|+||||+|+.+++...-...+. ..++..-...+.|
T Consensus 15 f~divGQe~vv~~L~~~l~~~r-----l~hAyLf~Gp~GvGKTTlAr~lAk~L~c~~~~~-------~~pCg~C~~C~~i 82 (647)
T PRK07994 15 FAEVVGQEHVLTALANALDLGR-----LHHAYLFSGTRGVGKTTIARLLAKGLNCETGIT-------ATPCGECDNCREI 82 (647)
T ss_pred HHHhcCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHhhhhccCCC-------CCCCCCCHHHHHH
Confidence 3578999999999999887432 345678999999999999999988421111000 0111111111111
Q ss_pred HHHhc-----CCCCCCCcHHHH---HHHHHH-HhcCceEEEEEecCCCCCccChhHHHHhhhCCCCCcEEEEEcCC-hhh
Q 002308 229 LEALT-----GSTSNLNALQSL---LISIDE-SIAGKRFLLVLDDVWDGDYIKWEPFYRCLKKGLHGSKILITTRK-ESI 298 (938)
Q Consensus 229 ~~~l~-----~~~~~~~~~~~~---~~~l~~-~l~~~~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtr~-~~v 298 (938)
...-. ........+++. ...+.. -..+++-++|+|+++......++.++..+..-....++|++|.+ ..+
T Consensus 83 ~~g~~~D~ieidaas~~~VddiR~li~~~~~~p~~g~~KV~IIDEah~Ls~~a~NALLKtLEEPp~~v~FIL~Tt~~~kL 162 (647)
T PRK07994 83 EQGRFVDLIEIDAASRTKVEDTRELLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKL 162 (647)
T ss_pred HcCCCCCceeecccccCCHHHHHHHHHHHHhhhhcCCCEEEEEechHhCCHHHHHHHHHHHHcCCCCeEEEEecCCcccc
Confidence 11000 000001122222 222211 12456679999999887767788888888765556665555544 444
Q ss_pred hhh-hcCCceEeCCCCChHHHHHHHHHhhcCCCCCchhhHHHHHHHHHHHhcCCChhHHHHHH
Q 002308 299 VSM-MRSTDIISIEELAEEECWVLFKRLAFFGRSTEECEKLEQIGQRIARKCKGLPLAAKTMG 360 (938)
Q Consensus 299 ~~~-~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~~~ 360 (938)
... ......+.+.+++.++..+.+...+...+.... ......|++.++|.+..+..+.
T Consensus 163 l~TI~SRC~~~~f~~Ls~~ei~~~L~~il~~e~i~~e----~~aL~~Ia~~s~Gs~R~Al~ll 221 (647)
T PRK07994 163 PVTILSRCLQFHLKALDVEQIRQQLEHILQAEQIPFE----PRALQLLARAADGSMRDALSLT 221 (647)
T ss_pred chHHHhhheEeeCCCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCCHHHHHHHH
Confidence 322 344679999999999999998876533222111 2335688999999887554443
No 76
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=98.45 E-value=7.7e-06 Score=91.49 Aligned_cols=194 Identities=16% Similarity=0.165 Sum_probs=114.0
Q ss_pred CceecchhhHHHHHHHHhccCcccCCCeEEEEEEccCCChHHHHHHHHhhhhhhhcccCe-EEEEEeCCCCCHHHHHHHH
Q 002308 150 EEICGRVGERNALLSMLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNHVEVKREFDK-TLWVCVSETFDEFRIAKAM 228 (938)
Q Consensus 150 ~~~vGr~~~~~~l~~~l~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~-~~wv~~~~~~~~~~~~~~i 228 (938)
..++|.+..+..+...+... .-.+.+.++|+.|+||||+|+.+++...-...... ..+..+... .....+
T Consensus 21 ~dliGq~~vv~~L~~ai~~~-----ri~~a~Lf~Gp~G~GKTT~ArilAk~Lnc~~~~~~~~~~~~C~~C----~~C~~i 91 (507)
T PRK06645 21 AELQGQEVLVKVLSYTILND-----RLAGGYLLTGIRGVGKTTSARIIAKAVNCSALITENTTIKTCEQC----TNCISF 91 (507)
T ss_pred HHhcCcHHHHHHHHHHHHcC-----CCCceEEEECCCCCCHHHHHHHHHHHhcCccccccCcCcCCCCCC----hHHHHH
Confidence 46899999999888877643 23467899999999999999999885321111000 000000000 000011
Q ss_pred HHHhc-----CCCCCCCcHHHHHHHHHHH----hcCceEEEEEecCCCCCccChhHHHHhhhCCCCCcEEEE-EcCChhh
Q 002308 229 LEALT-----GSTSNLNALQSLLISIDES----IAGKRFLLVLDDVWDGDYIKWEPFYRCLKKGLHGSKILI-TTRKESI 298 (938)
Q Consensus 229 ~~~l~-----~~~~~~~~~~~~~~~l~~~----l~~~~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilv-Ttr~~~v 298 (938)
..... .........+++...+... ..+++-++|+|+++......|..+...+....+.+.+|+ ||+...+
T Consensus 92 ~~~~h~Dv~eidaas~~~vd~Ir~iie~a~~~P~~~~~KVvIIDEa~~Ls~~a~naLLk~LEepp~~~vfI~aTte~~kI 171 (507)
T PRK06645 92 NNHNHPDIIEIDAASKTSVDDIRRIIESAEYKPLQGKHKIFIIDEVHMLSKGAFNALLKTLEEPPPHIIFIFATTEVQKI 171 (507)
T ss_pred hcCCCCcEEEeeccCCCCHHHHHHHHHHHHhccccCCcEEEEEEChhhcCHHHHHHHHHHHhhcCCCEEEEEEeCChHHh
Confidence 00000 0000111222322222221 235667899999988776778888888876656666554 5444444
Q ss_pred hhhh-cCCceEeCCCCChHHHHHHHHHhhcCCCCCchhhHHHHHHHHHHHhcCCChhHH
Q 002308 299 VSMM-RSTDIISIEELAEEECWVLFKRLAFFGRSTEECEKLEQIGQRIARKCKGLPLAA 356 (938)
Q Consensus 299 ~~~~-~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai 356 (938)
...+ .....+++.+++.++....+...+...+.... .+....|++.++|.+.-+
T Consensus 172 ~~tI~SRc~~~ef~~ls~~el~~~L~~i~~~egi~ie----~eAL~~Ia~~s~GslR~a 226 (507)
T PRK06645 172 PATIISRCQRYDLRRLSFEEIFKLLEYITKQENLKTD----IEALRIIAYKSEGSARDA 226 (507)
T ss_pred hHHHHhcceEEEccCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCCHHHH
Confidence 4433 34568999999999999999988754332222 233567888999877544
No 77
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=98.45 E-value=2.7e-06 Score=85.99 Aligned_cols=159 Identities=19% Similarity=0.210 Sum_probs=97.9
Q ss_pred CCCeEEEEEEccCCChHHHHHHHHhhhhhhhcccCeEEEEEeCCCCCHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHh
Q 002308 174 QKGLHIISIVGMGGIGKTTLAQLACNHVEVKREFDKTLWVCVSETFDEFRIAKAMLEALTGSTSNLNALQSLLISIDESI 253 (938)
Q Consensus 174 ~~~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l 253 (938)
+.....+.+||++|+||||||+.+....+ .+ ...||..|....-..-.+.|.++-. -...+
T Consensus 159 q~~ipSmIlWGppG~GKTtlArlia~tsk--~~--SyrfvelSAt~a~t~dvR~ife~aq---------------~~~~l 219 (554)
T KOG2028|consen 159 QNRIPSMILWGPPGTGKTTLARLIASTSK--KH--SYRFVELSATNAKTNDVRDIFEQAQ---------------NEKSL 219 (554)
T ss_pred cCCCCceEEecCCCCchHHHHHHHHhhcC--CC--ceEEEEEeccccchHHHHHHHHHHH---------------HHHhh
Confidence 34677889999999999999999998532 22 1446666554333333333333311 01134
Q ss_pred cCceEEEEEecCCCCCccChhHHHHhhhCCCCCcEEEE--EcCChhh---hhhhcCCceEeCCCCChHHHHHHHHHhhc-
Q 002308 254 AGKRFLLVLDDVWDGDYIKWEPFYRCLKKGLHGSKILI--TTRKESI---VSMMRSTDIISIEELAEEECWVLFKRLAF- 327 (938)
Q Consensus 254 ~~~~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilv--Ttr~~~v---~~~~~~~~~~~l~~L~~~~~~~lf~~~~~- 327 (938)
.++|.+|++|.|.+....+.+ .++|.-..|+-++| ||.++.. +..+....++-++.|+.++-..++.+...
T Consensus 220 ~krkTilFiDEiHRFNksQQD---~fLP~VE~G~I~lIGATTENPSFqln~aLlSRC~VfvLekL~~n~v~~iL~raia~ 296 (554)
T KOG2028|consen 220 TKRKTILFIDEIHRFNKSQQD---TFLPHVENGDITLIGATTENPSFQLNAALLSRCRVFVLEKLPVNAVVTILMRAIAS 296 (554)
T ss_pred hcceeEEEeHHhhhhhhhhhh---cccceeccCceEEEecccCCCccchhHHHHhccceeEeccCCHHHHHHHHHHHHHh
Confidence 578999999999764332222 34565567876665 7777642 22245577899999999999998887432
Q ss_pred --CCCC---Cchh---hHHHHHHHHHHHhcCCChh
Q 002308 328 --FGRS---TEEC---EKLEQIGQRIARKCKGLPL 354 (938)
Q Consensus 328 --~~~~---~~~~---~~~~~~~~~i~~~~~g~Pl 354 (938)
.... .... .....+.+-++..|+|-..
T Consensus 297 l~dser~~~~l~n~s~~ve~siidyla~lsdGDaR 331 (554)
T KOG2028|consen 297 LGDSERPTDPLPNSSMFVEDSIIDYLAYLSDGDAR 331 (554)
T ss_pred hccccccCCCCCCcchhhhHHHHHHHHHhcCchHH
Confidence 1111 1111 2334566777888888543
No 78
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.44 E-value=2.8e-06 Score=92.80 Aligned_cols=196 Identities=14% Similarity=0.106 Sum_probs=114.0
Q ss_pred CceecchhhHHHHHHHHhccCcccCCCeEEEEEEccCCChHHHHHHHHhhhhhhhcccCeEEEEEeCCCCCHHHHHHHHH
Q 002308 150 EEICGRVGERNALLSMLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNHVEVKREFDKTLWVCVSETFDEFRIAKAML 229 (938)
Q Consensus 150 ~~~vGr~~~~~~l~~~l~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 229 (938)
.+++|.+..+..+..++.... -.+.+.++|+.|+||||+|+.+++...-. .... ...+.....-..+.....
T Consensus 18 ~dvVGQe~iv~~L~~~i~~~r-----i~ha~Lf~GP~GtGKTTlAriLAk~Lnce-~~~~--~~pCg~C~sC~~i~~g~~ 89 (484)
T PRK14956 18 RDVIHQDLAIGALQNALKSGK-----IGHAYIFFGPRGVGKTTIARILAKRLNCE-NPIG--NEPCNECTSCLEITKGIS 89 (484)
T ss_pred HHHhChHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHhcCcc-cccC--ccccCCCcHHHHHHccCC
Confidence 568999999999999887532 24568999999999999999998842111 1000 001111111111111110
Q ss_pred HHhcC----CCCCCCcHHHHHHHHHHH-hcCceEEEEEecCCCCCccChhHHHHhhhCCCCCcEEEEEcCC-hhhhhh-h
Q 002308 230 EALTG----STSNLNALQSLLISIDES-IAGKRFLLVLDDVWDGDYIKWEPFYRCLKKGLHGSKILITTRK-ESIVSM-M 302 (938)
Q Consensus 230 ~~l~~----~~~~~~~~~~~~~~l~~~-l~~~~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtr~-~~v~~~-~ 302 (938)
..+.. ......+..++...+... ..++.-++|+|+++......++.++..+........+|++|.. ..+... .
T Consensus 90 ~dviEIdaas~~gVd~IReL~e~l~~~p~~g~~KV~IIDEah~Ls~~A~NALLKtLEEPp~~viFILaTte~~kI~~TI~ 169 (484)
T PRK14956 90 SDVLEIDAASNRGIENIRELRDNVKFAPMGGKYKVYIIDEVHMLTDQSFNALLKTLEEPPAHIVFILATTEFHKIPETIL 169 (484)
T ss_pred ccceeechhhcccHHHHHHHHHHHHhhhhcCCCEEEEEechhhcCHHHHHHHHHHhhcCCCceEEEeecCChhhccHHHH
Confidence 00000 001111222222222221 2356679999999887777788888777654445554544443 444333 3
Q ss_pred cCCceEeCCCCChHHHHHHHHHhhcCCCCCchhhHHHHHHHHHHHhcCCChhHHH
Q 002308 303 RSTDIISIEELAEEECWVLFKRLAFFGRSTEECEKLEQIGQRIARKCKGLPLAAK 357 (938)
Q Consensus 303 ~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~ 357 (938)
...+.+.+.+++.++..+.+.+.+...+... ..+....|++.++|.+.-..
T Consensus 170 SRCq~~~f~~ls~~~i~~~L~~i~~~Egi~~----e~eAL~~Ia~~S~Gd~RdAL 220 (484)
T PRK14956 170 SRCQDFIFKKVPLSVLQDYSEKLCKIENVQY----DQEGLFWIAKKGDGSVRDML 220 (484)
T ss_pred hhhheeeecCCCHHHHHHHHHHHHHHcCCCC----CHHHHHHHHHHcCChHHHHH
Confidence 4457899999999999998888764333221 23346789999999885443
No 79
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.43 E-value=7.4e-06 Score=90.76 Aligned_cols=181 Identities=17% Similarity=0.178 Sum_probs=115.3
Q ss_pred CceecchhhHHHHHHHHhccCcccCCCeEEEEEEccCCChHHHHHHHHhhhhh------------------hh-cccCeE
Q 002308 150 EEICGRVGERNALLSMLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNHVE------------------VK-REFDKT 210 (938)
Q Consensus 150 ~~~vGr~~~~~~l~~~l~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~v~~~~~------------------~~-~~f~~~ 210 (938)
.++||.+..++.+..++.... -.+.+.++|+.|+||||+|+.+++... +. +.+..+
T Consensus 13 ~dliGQe~vv~~L~~a~~~~r-----i~ha~Lf~Gp~G~GKTT~ArilAk~LnC~~~~~~~pCg~C~~C~~i~~~~~~Dv 87 (491)
T PRK14964 13 KDLVGQDVLVRILRNAFTLNK-----IPQSILLVGASGVGKTTCARIISLCLNCSNGPTSDPCGTCHNCISIKNSNHPDV 87 (491)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-----CCceEEEECCCCccHHHHHHHHHHHHcCcCCCCCCCccccHHHHHHhccCCCCE
Confidence 578999998888888886432 346789999999999999999876310 00 112233
Q ss_pred EEEEeCCCCCHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHhcCceEEEEEecCCCCCccChhHHHHhhhCCCCCcEEE
Q 002308 211 LWVCVSETFDEFRIAKAMLEALTGSTSNLNALQSLLISIDESIAGKRFLLVLDDVWDGDYIKWEPFYRCLKKGLHGSKIL 290 (938)
Q Consensus 211 ~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~il 290 (938)
+.++.+....++++ +++++..... -..+++-++|+|+++..+...++.+...+..-.+.+++|
T Consensus 88 ~eidaas~~~vddI-R~Iie~~~~~----------------P~~~~~KVvIIDEah~Ls~~A~NaLLK~LEePp~~v~fI 150 (491)
T PRK14964 88 IEIDAASNTSVDDI-KVILENSCYL----------------PISSKFKVYIIDEVHMLSNSAFNALLKTLEEPAPHVKFI 150 (491)
T ss_pred EEEecccCCCHHHH-HHHHHHHHhc----------------cccCCceEEEEeChHhCCHHHHHHHHHHHhCCCCCeEEE
Confidence 44444333333321 2222221100 012455689999998766666777888887766677666
Q ss_pred EEcCC-hhhhhh-hcCCceEeCCCCChHHHHHHHHHhhcCCCCCchhhHHHHHHHHHHHhcCCChhHH
Q 002308 291 ITTRK-ESIVSM-MRSTDIISIEELAEEECWVLFKRLAFFGRSTEECEKLEQIGQRIARKCKGLPLAA 356 (938)
Q Consensus 291 vTtr~-~~v~~~-~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai 356 (938)
++|.. ..+... ......+++.+++.++..+.+...+...+.... .+....|++.++|.+..+
T Consensus 151 latte~~Kl~~tI~SRc~~~~f~~l~~~el~~~L~~ia~~Egi~i~----~eAL~lIa~~s~GslR~a 214 (491)
T PRK14964 151 LATTEVKKIPVTIISRCQRFDLQKIPTDKLVEHLVDIAKKENIEHD----EESLKLIAENSSGSMRNA 214 (491)
T ss_pred EEeCChHHHHHHHHHhheeeecccccHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCCHHHH
Confidence 65543 344333 344678999999999999999887754333222 233668899998877644
No 80
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.43 E-value=6.9e-06 Score=91.58 Aligned_cols=187 Identities=16% Similarity=0.215 Sum_probs=109.5
Q ss_pred CceecchhhHHHHHHHHhccCcccCCCeEEEEEEccCCChHHHHHHHHhhhhhhhcc-------------------cCeE
Q 002308 150 EEICGRVGERNALLSMLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNHVEVKRE-------------------FDKT 210 (938)
Q Consensus 150 ~~~vGr~~~~~~l~~~l~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~-------------------f~~~ 210 (938)
+.++|.+.....+...+.... -.+.+.++|++|+||||+|+.+++....... +..+
T Consensus 14 ~divGq~~i~~~L~~~i~~~~-----l~~~~Lf~GPpGtGKTTlA~~lA~~l~~~~~~~~~pc~~c~~c~~i~~g~~~dv 88 (472)
T PRK14962 14 SEVVGQDHVKKLIINALKKNS-----ISHAYIFAGPRGTGKTTVARILAKSLNCENRKGVEPCNECRACRSIDEGTFMDV 88 (472)
T ss_pred HHccCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCCCcccHHHHHHhcCCCCcc
Confidence 569999888888888776432 3456899999999999999999874211100 1112
Q ss_pred EEEEeCCCCCHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHH-HhcCceEEEEEecCCCCCccChhHHHHhhhCCCCCcEE
Q 002308 211 LWVCVSETFDEFRIAKAMLEALTGSTSNLNALQSLLISIDE-SIAGKRFLLVLDDVWDGDYIKWEPFYRCLKKGLHGSKI 289 (938)
Q Consensus 211 ~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~-~l~~~~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~i 289 (938)
+.++.+....+..+ +++.+. +.. -..+++-++|+|+++.......+.+...+........+
T Consensus 89 ~el~aa~~~gid~i-R~i~~~-----------------~~~~p~~~~~kVvIIDE~h~Lt~~a~~~LLk~LE~p~~~vv~ 150 (472)
T PRK14962 89 IELDAASNRGIDEI-RKIRDA-----------------VGYRPMEGKYKVYIIDEVHMLTKEAFNALLKTLEEPPSHVVF 150 (472)
T ss_pred EEEeCcccCCHHHH-HHHHHH-----------------HhhChhcCCeEEEEEEChHHhHHHHHHHHHHHHHhCCCcEEE
Confidence 22222211112111 111111 110 12356679999999765544556666666654444544
Q ss_pred EEEcCC-hhhhhhh-cCCceEeCCCCChHHHHHHHHHhhcCCCCCchhhHHHHHHHHHHHhcCC-ChhHHHHHHhhh
Q 002308 290 LITTRK-ESIVSMM-RSTDIISIEELAEEECWVLFKRLAFFGRSTEECEKLEQIGQRIARKCKG-LPLAAKTMGSLM 363 (938)
Q Consensus 290 lvTtr~-~~v~~~~-~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g-~Plai~~~~~~l 363 (938)
|++|.+ ..+...+ .....+++.+++.++....+...+...+.... .+....|++.++| .+.++..+-.+.
T Consensus 151 Ilattn~~kl~~~L~SR~~vv~f~~l~~~el~~~L~~i~~~egi~i~----~eal~~Ia~~s~GdlR~aln~Le~l~ 223 (472)
T PRK14962 151 VLATTNLEKVPPTIISRCQVIEFRNISDELIIKRLQEVAEAEGIEID----REALSFIAKRASGGLRDALTMLEQVW 223 (472)
T ss_pred EEEeCChHhhhHHHhcCcEEEEECCccHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 444444 3333332 34568999999999999988887643332222 2335678877754 566766665543
No 81
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=98.43 E-value=7.1e-06 Score=92.28 Aligned_cols=192 Identities=15% Similarity=0.166 Sum_probs=110.2
Q ss_pred CCceecchhhHHHHHHHHhccCcccCCCeEEEEEEccCCChHHHHHHHHhhhhhhhcccCeEEEEEeCCCCCHHHHHHHH
Q 002308 149 EEEICGRVGERNALLSMLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNHVEVKREFDKTLWVCVSETFDEFRIAKAM 228 (938)
Q Consensus 149 ~~~~vGr~~~~~~l~~~l~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i 228 (938)
-..++|++..++.+..++.... ..+.+.++|+.|+||||+|+.+++...-.. |... ..+..-...+.+
T Consensus 15 F~dIIGQe~iv~~L~~aI~~~r-----l~hA~Lf~GP~GvGKTTlA~~lAk~L~C~~------~~~~-~~Cg~C~sCr~i 82 (605)
T PRK05896 15 FKQIIGQELIKKILVNAILNNK-----LTHAYIFSGPRGIGKTSIAKIFAKAINCLN------PKDG-DCCNSCSVCESI 82 (605)
T ss_pred HHHhcCcHHHHHHHHHHHHcCC-----CCceEEEECCCCCCHHHHHHHHHHHhcCCC------CCCC-CCCcccHHHHHH
Confidence 3578999999999999886432 346788999999999999999988421111 1110 011111111111
Q ss_pred HHHhcC-----CCCCCCcHHHHH---HHHHHH-hcCceEEEEEecCCCCCccChhHHHHhhhCCCCCcEEEEEcCC-hhh
Q 002308 229 LEALTG-----STSNLNALQSLL---ISIDES-IAGKRFLLVLDDVWDGDYIKWEPFYRCLKKGLHGSKILITTRK-ESI 298 (938)
Q Consensus 229 ~~~l~~-----~~~~~~~~~~~~---~~l~~~-l~~~~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtr~-~~v 298 (938)
...... ........++.. ..+... ..+++-++|+|+++......+..+...+........+|++|.. ..+
T Consensus 83 ~~~~h~DiieIdaas~igVd~IReIi~~~~~~P~~~~~KVIIIDEad~Lt~~A~NaLLKtLEEPp~~tvfIL~Tt~~~KL 162 (605)
T PRK05896 83 NTNQSVDIVELDAASNNGVDEIRNIIDNINYLPTTFKYKVYIIDEAHMLSTSAWNALLKTLEEPPKHVVFIFATTEFQKI 162 (605)
T ss_pred HcCCCCceEEeccccccCHHHHHHHHHHHHhchhhCCcEEEEEechHhCCHHHHHHHHHHHHhCCCcEEEEEECCChHhh
Confidence 111000 000011122222 111110 1233446999999876656677788877765555655555543 333
Q ss_pred hhh-hcCCceEeCCCCChHHHHHHHHHhhcCCCCCchhhHHHHHHHHHHHhcCCChhHH
Q 002308 299 VSM-MRSTDIISIEELAEEECWVLFKRLAFFGRSTEECEKLEQIGQRIARKCKGLPLAA 356 (938)
Q Consensus 299 ~~~-~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai 356 (938)
... ......+++.++++++....+...+...+.... .+.+..+++.++|.+..+
T Consensus 163 l~TI~SRcq~ieF~~Ls~~eL~~~L~~il~kegi~Is----~eal~~La~lS~GdlR~A 217 (605)
T PRK05896 163 PLTIISRCQRYNFKKLNNSELQELLKSIAKKEKIKIE----DNAIDKIADLADGSLRDG 217 (605)
T ss_pred hHHHHhhhhhcccCCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCcHHHH
Confidence 322 344678999999999999888876643322121 233678889999866533
No 82
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=98.42 E-value=1.2e-05 Score=88.55 Aligned_cols=184 Identities=15% Similarity=0.168 Sum_probs=112.4
Q ss_pred CceecchhhHHHHHHHHhccCcccCCCeEEEEEEccCCChHHHHHHHHhhhhhhh--------------------cccCe
Q 002308 150 EEICGRVGERNALLSMLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNHVEVK--------------------REFDK 209 (938)
Q Consensus 150 ~~~vGr~~~~~~l~~~l~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~v~~~~~~~--------------------~~f~~ 209 (938)
..++|.+..++.+.+++... .-.+.+.++|++|+||||+|+.+.....-. .+++
T Consensus 14 ~~iig~~~~~~~l~~~~~~~-----~~~~~~Ll~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~~- 87 (355)
T TIGR02397 14 EDVIGQEHIVQTLKNAIKNG-----RIAHAYLFSGPRGTGKTSIARIFAKALNCQNGPDGEPCNECESCKEINSGSSLD- 87 (355)
T ss_pred hhccCcHHHHHHHHHHHHcC-----CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCC-
Confidence 56899999999999988643 235678899999999999999888742111 0122
Q ss_pred EEEEEeCCCCCHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHhcCceEEEEEecCCCCCccChhHHHHhhhCCCCCcEE
Q 002308 210 TLWVCVSETFDEFRIAKAMLEALTGSTSNLNALQSLLISIDESIAGKRFLLVLDDVWDGDYIKWEPFYRCLKKGLHGSKI 289 (938)
Q Consensus 210 ~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~i 289 (938)
++++......... ..+++...+... -..+++-++|+|++..........+...+......+.+
T Consensus 88 ~~~~~~~~~~~~~-~~~~l~~~~~~~----------------p~~~~~~vviidea~~l~~~~~~~Ll~~le~~~~~~~l 150 (355)
T TIGR02397 88 VIEIDAASNNGVD-DIREILDNVKYA----------------PSSGKYKVYIIDEVHMLSKSAFNALLKTLEEPPEHVVF 150 (355)
T ss_pred EEEeeccccCCHH-HHHHHHHHHhcC----------------cccCCceEEEEeChhhcCHHHHHHHHHHHhCCccceeE
Confidence 1222222111111 112222221100 01244558899998765544566777777655556666
Q ss_pred EEEcCChh-hhhh-hcCCceEeCCCCChHHHHHHHHHhhcCCCCCchhhHHHHHHHHHHHhcCCChhHHHHHH
Q 002308 290 LITTRKES-IVSM-MRSTDIISIEELAEEECWVLFKRLAFFGRSTEECEKLEQIGQRIARKCKGLPLAAKTMG 360 (938)
Q Consensus 290 lvTtr~~~-v~~~-~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~~~ 360 (938)
|++|.+.. +... ......+++.++++++..+.+...+...+.... .+.+..+++.++|.|..+....
T Consensus 151 Il~~~~~~~l~~~l~sr~~~~~~~~~~~~~l~~~l~~~~~~~g~~i~----~~a~~~l~~~~~g~~~~a~~~l 219 (355)
T TIGR02397 151 ILATTEPHKIPATILSRCQRFDFKRIPLEDIVERLKKILDKEGIKIE----DEALELIARAADGSLRDALSLL 219 (355)
T ss_pred EEEeCCHHHHHHHHHhheeEEEcCCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCChHHHHHHH
Confidence 67765543 2222 233467889999999999988887643332111 2447788999999887665544
No 83
>PLN03150 hypothetical protein; Provisional
Probab=98.39 E-value=4.7e-07 Score=105.85 Aligned_cols=109 Identities=20% Similarity=0.295 Sum_probs=92.1
Q ss_pred ceeEEeccCCCCCCCCchhhHHHHHhccCCCeeEEecCCCCCCcccCccccccCCCCeeeecCCccc-cccccccCCCCc
Q 002308 539 RIRSLLIEWPEFGHSSLNGEILEELFRESTSLRALDFPSFYLPLEIPRNIEKLVHLRYLNLSDQKIK-KLPETLCELYNL 617 (938)
Q Consensus 539 ~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~n~~~~~lp~~~~~l~~L~~L~L~~~~i~-~lp~~i~~l~~L 617 (938)
.++.|.|.+|.+ .+.++. .+..+++|+.|+|++|.+.+.+|..++.+++|++|+|++|.+. .+|..++++++|
T Consensus 419 ~v~~L~L~~n~L-----~g~ip~-~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L 492 (623)
T PLN03150 419 FIDGLGLDNQGL-----RGFIPN-DISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSL 492 (623)
T ss_pred EEEEEECCCCCc-----cccCCH-HHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCC
Confidence 477888877765 233344 4888999999999999988899999999999999999999998 789999999999
Q ss_pred cEEEcCCCCCccccccccccc-CccceeecCCCcccc
Q 002308 618 EKLDISGCSDLRELPKGIGKL-INMKHLLNSGTRSLR 653 (938)
Q Consensus 618 ~~L~l~~~~~l~~lp~~i~~l-~~L~~L~l~~~~~~~ 653 (938)
++|+|++|.....+|..+..+ .++..+++.+|..+.
T Consensus 493 ~~L~Ls~N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc 529 (623)
T PLN03150 493 RILNLNGNSLSGRVPAALGGRLLHRASFNFTDNAGLC 529 (623)
T ss_pred CEEECcCCcccccCChHHhhccccCceEEecCCcccc
Confidence 999999999888999988764 467788888885443
No 84
>PRK08084 DNA replication initiation factor; Provisional
Probab=98.39 E-value=1.4e-05 Score=81.28 Aligned_cols=154 Identities=16% Similarity=0.168 Sum_probs=92.4
Q ss_pred eEEEEEEccCCChHHHHHHHHhhhhhhhcccCeEEEEEeCCCCCHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHhcCc
Q 002308 177 LHIISIVGMGGIGKTTLAQLACNHVEVKREFDKTLWVCVSETFDEFRIAKAMLEALTGSTSNLNALQSLLISIDESIAGK 256 (938)
Q Consensus 177 ~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~ 256 (938)
...+.|+|+.|+|||+|++.+++.. ...-..+.|+.+..... ...+..+.+ ..
T Consensus 45 ~~~l~l~Gp~G~GKThLl~a~~~~~--~~~~~~v~y~~~~~~~~--------------------~~~~~~~~~----~~- 97 (235)
T PRK08084 45 SGYIYLWSREGAGRSHLLHAACAEL--SQRGRAVGYVPLDKRAW--------------------FVPEVLEGM----EQ- 97 (235)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHH--HhCCCeEEEEEHHHHhh--------------------hhHHHHHHh----hh-
Confidence 3578999999999999999999843 22223466766543100 001111111 11
Q ss_pred eEEEEEecCCCCC-ccChhH-HHHhhhCC-CCC-cEEEEEcCCh---------hhhhhhcCCceEeCCCCChHHHHHHHH
Q 002308 257 RFLLVLDDVWDGD-YIKWEP-FYRCLKKG-LHG-SKILITTRKE---------SIVSMMRSTDIISIEELAEEECWVLFK 323 (938)
Q Consensus 257 ~~LlVlDdv~~~~-~~~~~~-l~~~l~~~-~~g-s~ilvTtr~~---------~v~~~~~~~~~~~l~~L~~~~~~~lf~ 323 (938)
--+|++||+.... ...|+. +...+... ..| .++|+||+.. ++...+....++++.++++++-.+++.
T Consensus 98 ~dlliiDdi~~~~~~~~~~~~lf~l~n~~~e~g~~~li~ts~~~p~~l~~~~~~L~SRl~~g~~~~l~~~~~~~~~~~l~ 177 (235)
T PRK08084 98 LSLVCIDNIECIAGDELWEMAIFDLYNRILESGRTRLLITGDRPPRQLNLGLPDLASRLDWGQIYKLQPLSDEEKLQALQ 177 (235)
T ss_pred CCEEEEeChhhhcCCHHHHHHHHHHHHHHHHcCCCeEEEeCCCChHHcCcccHHHHHHHhCCceeeecCCCHHHHHHHHH
Confidence 1378999996532 123443 33333321 233 3699999864 233344556799999999999999998
Q ss_pred HhhcCCCCCchhhHHHHHHHHHHHhcCCChhHHHHHHh
Q 002308 324 RLAFFGRSTEECEKLEQIGQRIARKCKGLPLAAKTMGS 361 (938)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~~~~ 361 (938)
+++...+- .--+++...|++.+.|..-.+..+-.
T Consensus 178 ~~a~~~~~----~l~~~v~~~L~~~~~~d~r~l~~~l~ 211 (235)
T PRK08084 178 LRARLRGF----ELPEDVGRFLLKRLDREMRTLFMTLD 211 (235)
T ss_pred HHHHHcCC----CCCHHHHHHHHHhhcCCHHHHHHHHH
Confidence 86643221 12234577888888876655544443
No 85
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=98.38 E-value=6.3e-06 Score=93.63 Aligned_cols=180 Identities=14% Similarity=0.187 Sum_probs=111.9
Q ss_pred CceecchhhHHHHHHHHhccCcccCCCeEEEEEEccCCChHHHHHHHHhhhhhhhc-------------------ccCeE
Q 002308 150 EEICGRVGERNALLSMLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNHVEVKR-------------------EFDKT 210 (938)
Q Consensus 150 ~~~vGr~~~~~~l~~~l~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~-------------------~f~~~ 210 (938)
..++|.+..+..|..++.... -.+.+.++|+.|+||||+|+.+++...-.. .|..+
T Consensus 16 ddIIGQe~vv~~L~~ai~~~r-----l~Ha~Lf~GP~GvGKTTlAriLAk~LnC~~~~~~~pCg~C~sCr~i~~g~~~Dv 90 (709)
T PRK08691 16 ADLVGQEHVVKALQNALDEGR-----LHHAYLLTGTRGVGKTTIARILAKSLNCENAQHGEPCGVCQSCTQIDAGRYVDL 90 (709)
T ss_pred HHHcCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCcHHHHHHHHHHHhcccCCCCCCCCcccHHHHHHhccCccce
Confidence 579999999999999987532 356789999999999999999887421110 01111
Q ss_pred EEEEeCCCCCHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHH---H-hcCceEEEEEecCCCCCccChhHHHHhhhCCCCC
Q 002308 211 LWVCVSETFDEFRIAKAMLEALTGSTSNLNALQSLLISIDE---S-IAGKRFLLVLDDVWDGDYIKWEPFYRCLKKGLHG 286 (938)
Q Consensus 211 ~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~---~-l~~~~~LlVlDdv~~~~~~~~~~l~~~l~~~~~g 286 (938)
+.+..... ...+.+...+.. . ..+++-++|+|++...+......++..+......
T Consensus 91 lEidaAs~---------------------~gVd~IRelle~a~~~P~~gk~KVIIIDEad~Ls~~A~NALLKtLEEPp~~ 149 (709)
T PRK08691 91 LEIDAASN---------------------TGIDNIREVLENAQYAPTAGKYKVYIIDEVHMLSKSAFNAMLKTLEEPPEH 149 (709)
T ss_pred EEEecccc---------------------CCHHHHHHHHHHHHhhhhhCCcEEEEEECccccCHHHHHHHHHHHHhCCCC
Confidence 12221111 112222222211 1 2255668999999876655566677777654455
Q ss_pred cEEEEEcCCh-hhhhh-hcCCceEeCCCCChHHHHHHHHHhhcCCCCCchhhHHHHHHHHHHHhcCCChhHHHHH
Q 002308 287 SKILITTRKE-SIVSM-MRSTDIISIEELAEEECWVLFKRLAFFGRSTEECEKLEQIGQRIARKCKGLPLAAKTM 359 (938)
Q Consensus 287 s~ilvTtr~~-~v~~~-~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~~ 359 (938)
.++|++|.+. .+... .+....+.+.+++.++....+.+.+...+.... .+....|++.++|.+.-+...
T Consensus 150 v~fILaTtd~~kL~~TIrSRC~~f~f~~Ls~eeI~~~L~~Il~kEgi~id----~eAL~~Ia~~A~GslRdAlnL 220 (709)
T PRK08691 150 VKFILATTDPHKVPVTVLSRCLQFVLRNMTAQQVADHLAHVLDSEKIAYE----PPALQLLGRAAAGSMRDALSL 220 (709)
T ss_pred cEEEEEeCCccccchHHHHHHhhhhcCCCCHHHHHHHHHHHHHHcCCCcC----HHHHHHHHHHhCCCHHHHHHH
Confidence 6677666543 22222 233467889999999999998887654332222 234678999999988555433
No 86
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.38 E-value=2.1e-08 Score=103.19 Aligned_cols=135 Identities=18% Similarity=0.278 Sum_probs=69.8
Q ss_pred ccCCCCEEEEecCCCCCcCC--C-CCCCCccceeecccccCceEeCcccccCCCCCCCCCCCCcccccCCccceeecccc
Q 002308 779 SLTNLKSLDLCFCENCEQLP--P-LGKLPSLEQLFISYMSSVKRVGDEFLGVESDRHDSSSSSSVIIAFPKLKSLSIFEM 855 (938)
Q Consensus 779 ~l~~L~~L~L~~~~~~~~l~--~-l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~~ 855 (938)
..++|+.|-++.|+...... . -.+++.|+.+++.+|..+... .+... ...+|.|+.|+++.|
T Consensus 318 ~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~--tL~sl-------------s~~C~~lr~lslshc 382 (483)
T KOG4341|consen 318 HCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDG--TLASL-------------SRNCPRLRVLSLSHC 382 (483)
T ss_pred CCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhh--hHhhh-------------ccCCchhccCChhhh
Confidence 44555555555554322211 1 235566666666655422111 11111 225666666666655
Q ss_pred ccccccccccccccccccccccccceecccccccccC-CCCCCCCCCCcCEEEEecCcchHHHhcCCCCCCCCcccCCCC
Q 002308 856 EELEEWDYGITRTGNTFINIMPRLSSLTINYCSKLKA-LPDHIHQTTTLKELRIGECDLLEERYRKGEGEDWPKTSHIPS 934 (938)
Q Consensus 856 ~~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~-lp~~l~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~i~~i~~ 934 (938)
...++-.. ......-..+..|+.|.+++|+.++. .-..+..+++|+.+++-+|..++....+ +-.+|.|+
T Consensus 383 e~itD~gi---~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q~vtk~~i~------~~~~~lp~ 453 (483)
T KOG4341|consen 383 ELITDEGI---RHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQDVTKEAIS------RFATHLPN 453 (483)
T ss_pred hhhhhhhh---hhhhhccccccccceeeecCCCCchHHHHHHHhhCcccceeeeechhhhhhhhhH------HHHhhCcc
Confidence 43332200 00001112577888888888887653 2334567788888888888887553321 12456666
Q ss_pred ccc
Q 002308 935 IHI 937 (938)
Q Consensus 935 ~~~ 937 (938)
+++
T Consensus 454 i~v 456 (483)
T KOG4341|consen 454 IKV 456 (483)
T ss_pred cee
Confidence 654
No 87
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=98.36 E-value=9.1e-06 Score=87.10 Aligned_cols=198 Identities=15% Similarity=0.158 Sum_probs=118.9
Q ss_pred CCCceecchhhHHHHHHHHhccCcccCCCeEEEEEEccCCChHHHHHHHHhhhhhhhc--ccCeEEEEEeCCCCCHHHHH
Q 002308 148 DEEEICGRVGERNALLSMLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNHVEVKR--EFDKTLWVCVSETFDEFRIA 225 (938)
Q Consensus 148 ~~~~~vGr~~~~~~l~~~l~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~--~f~~~~wv~~~~~~~~~~~~ 225 (938)
....++|.+...+.+...+.... ....+.|+|+.|+||||+|..+++...-.. .+... ....+.......
T Consensus 21 ~~~~l~Gh~~a~~~L~~a~~~gr-----l~ha~L~~G~~G~GKttlA~~lA~~Llc~~~~~~~~~---~~~~~~~~c~~c 92 (351)
T PRK09112 21 ENTRLFGHEEAEAFLAQAYREGK-----LHHALLFEGPEGIGKATLAFHLANHILSHPDPAEAPE---TLADPDPASPVW 92 (351)
T ss_pred chhhccCcHHHHHHHHHHHHcCC-----CCeeEeeECCCCCCHHHHHHHHHHHHcCCCccccCcc---ccCCCCCCCHHH
Confidence 34578999999999999997533 456789999999999999999988531110 01111 001111111223
Q ss_pred HHHHHH-------hcCC--C-----CCCCcHHHHHHHHHHHh-----cCceEEEEEecCCCCCccChhHHHHhhhCCCCC
Q 002308 226 KAMLEA-------LTGS--T-----SNLNALQSLLISIDESI-----AGKRFLLVLDDVWDGDYIKWEPFYRCLKKGLHG 286 (938)
Q Consensus 226 ~~i~~~-------l~~~--~-----~~~~~~~~~~~~l~~~l-----~~~~~LlVlDdv~~~~~~~~~~l~~~l~~~~~g 286 (938)
+.+... +..+ . .....++++. .+.+.+ .+++-++|+|+++..+....+.+...+.....+
T Consensus 93 ~~i~~~~hPdl~~l~~~~~~~~~~~~~~I~vd~iR-~l~~~l~~~~~~g~~rVviIDeAd~l~~~aanaLLk~LEEpp~~ 171 (351)
T PRK09112 93 RQIAQGAHPNLLHITRPFDEKTGKFKTAITVDEIR-RVGHFLSQTSGDGNWRIVIIDPADDMNRNAANAILKTLEEPPAR 171 (351)
T ss_pred HHHHcCCCCCEEEeecccccccccccccCCHHHHH-HHHHHhhhccccCCceEEEEEchhhcCHHHHHHHHHHHhcCCCC
Confidence 333221 1000 0 0111233332 333333 256679999999887766777788888764444
Q ss_pred cEE-EEEcCChhhhhhh-cCCceEeCCCCChHHHHHHHHHhhcCCCCCchhhHHHHHHHHHHHhcCCChhHHHHHH
Q 002308 287 SKI-LITTRKESIVSMM-RSTDIISIEELAEEECWVLFKRLAFFGRSTEECEKLEQIGQRIARKCKGLPLAAKTMG 360 (938)
Q Consensus 287 s~i-lvTtr~~~v~~~~-~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~~~ 360 (938)
..+ ++|++...+...+ +....+.+.+++.++..+++...... . . ...+....+++.++|.|.....+.
T Consensus 172 ~~fiLit~~~~~llptIrSRc~~i~l~pl~~~~~~~~L~~~~~~--~-~---~~~~~~~~i~~~s~G~pr~Al~ll 241 (351)
T PRK09112 172 ALFILISHSSGRLLPTIRSRCQPISLKPLDDDELKKALSHLGSS--Q-G---SDGEITEALLQRSKGSVRKALLLL 241 (351)
T ss_pred ceEEEEECChhhccHHHHhhccEEEecCCCHHHHHHHHHHhhcc--c-C---CCHHHHHHHHHHcCCCHHHHHHHH
Confidence 544 4554443333222 33579999999999999999874321 1 1 112336788999999998765544
No 88
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.36 E-value=5.4e-08 Score=108.75 Aligned_cols=218 Identities=24% Similarity=0.165 Sum_probs=127.2
Q ss_pred hccCCCeeEEecCCCCCCcccCccccccCCCCeeeecCCccccccccccCCCCccEEEcCCCCCcccccccccccCccce
Q 002308 564 FRESTSLRALDFPSFYLPLEIPRNIEKLVHLRYLNLSDQKIKKLPETLCELYNLEKLDISGCSDLRELPKGIGKLINMKH 643 (938)
Q Consensus 564 ~~~~~~Lr~L~L~~n~~~~~lp~~~~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~l~~~~~l~~lp~~i~~l~~L~~ 643 (938)
+..+++|..|++.+|. +..+...+..+++|++|+|++|.|+.+. .+..++.|+.|++++|. +..++. +..+++|+.
T Consensus 91 l~~~~~l~~l~l~~n~-i~~i~~~l~~~~~L~~L~ls~N~I~~i~-~l~~l~~L~~L~l~~N~-i~~~~~-~~~l~~L~~ 166 (414)
T KOG0531|consen 91 LSKLKSLEALDLYDNK-IEKIENLLSSLVNLQVLDLSFNKITKLE-GLSTLTLLKELNLSGNL-ISDISG-LESLKSLKL 166 (414)
T ss_pred cccccceeeeeccccc-hhhcccchhhhhcchheecccccccccc-chhhccchhhheeccCc-chhccC-Cccchhhhc
Confidence 5667788888888887 4444444677888888888888887764 36667778888888887 554443 556778888
Q ss_pred eecCCCcccccCCcc-CCCCCCCcccCeeEecCCCCCCCCcccccccccccccCcceeecCcCCCCChhhhhhhhccCCC
Q 002308 644 LLNSGTRSLRYMPVG-IGRLTGLRTLGEFHVSAGGGVDGSKACRLESLKNLEHLQVCCIRRLGDVSDVGEAKLLELDKKK 722 (938)
Q Consensus 644 L~l~~~~~~~~~p~~-l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~~~ 722 (938)
+++++|.....-+ . ...+.+|+.+.+..|.+.. ...+..+..+..+++..|.+....+ +....
T Consensus 167 l~l~~n~i~~ie~-~~~~~~~~l~~l~l~~n~i~~------i~~~~~~~~l~~~~l~~n~i~~~~~---------l~~~~ 230 (414)
T KOG0531|consen 167 LDLSYNRIVDIEN-DELSELISLEELDLGGNSIRE------IEGLDLLKKLVLLSLLDNKISKLEG---------LNELV 230 (414)
T ss_pred ccCCcchhhhhhh-hhhhhccchHHHhccCCchhc------ccchHHHHHHHHhhcccccceeccC---------cccch
Confidence 8888874443322 1 4667777777777776554 2223333344444444443322111 11111
Q ss_pred --cCCceEEEEecCCCCCCCCCccchHHHHhhCCCCCCCCeEEEeeecCCCCCCCchhccCCCCEEEEecCCCCCc---C
Q 002308 723 --YLSRLRLEFDKKGGGGGRRKNEDDQLLLEALQPPLNLKELEIHYYGGNTVFPSWMASLTNLKSLDLCFCENCEQ---L 797 (938)
Q Consensus 723 --~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~---l 797 (938)
+|+.++++.|.+.. ....+..+..+..|++..+.+.. + ..+...+.+..+.+..+.+... .
T Consensus 231 ~~~L~~l~l~~n~i~~------------~~~~~~~~~~l~~l~~~~n~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 296 (414)
T KOG0531|consen 231 MLHLRELYLSGNRISR------------SPEGLENLKNLPVLDLSSNRISN-L-EGLERLPKLSELWLNDNKLALSEAIS 296 (414)
T ss_pred hHHHHHHhcccCcccc------------ccccccccccccccchhhccccc-c-ccccccchHHHhccCcchhcchhhhh
Confidence 36677777776543 11455566667777777666554 1 1123444455555555543311 1
Q ss_pred --CCCCCCCccceeeccccc
Q 002308 798 --PPLGKLPSLEQLFISYMS 815 (938)
Q Consensus 798 --~~l~~l~~L~~L~L~~~~ 815 (938)
+..+..+.+..+.+.+|+
T Consensus 297 ~~~~~~~~~~~~~~~~~~~~ 316 (414)
T KOG0531|consen 297 QEYITSAAPTLVTLTLELNP 316 (414)
T ss_pred ccccccccccccccccccCc
Confidence 114556666666666665
No 89
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.36 E-value=2.1e-08 Score=103.06 Aligned_cols=143 Identities=17% Similarity=0.198 Sum_probs=94.9
Q ss_pred CCCCCeEEEeeecCCCCCCCch--hccCCCCEEEEecCCCCCcCCC---CCCCCccceeecccccCceEeCcccccCCCC
Q 002308 756 PLNLKELEIHYYGGNTVFPSWM--ASLTNLKSLDLCFCENCEQLPP---LGKLPSLEQLFISYMSSVKRVGDEFLGVESD 830 (938)
Q Consensus 756 ~~~L~~L~l~~~~~~~~~p~~~--~~l~~L~~L~L~~~~~~~~l~~---l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~l 830 (938)
++.+.++++..|.......-|. ..+..|+.|+.++|....+.+. ..++++|+.|.+.+|..+....-...
T Consensus 267 ~~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l----- 341 (483)
T KOG4341|consen 267 CLEILKLNLQHCNQLTDEDLWLIACGCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTML----- 341 (483)
T ss_pred ChHhhccchhhhccccchHHHHHhhhhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhh-----
Confidence 3445556655554333122121 2577899999999876554432 56889999999999986555433322
Q ss_pred CCCCCCCCcccccCCccceeeccccccccccccccccccccccccccccceecccccccccCC-----CCCCCCCCCcCE
Q 002308 831 RHDSSSSSSVIIAFPKLKSLSIFEMEELEEWDYGITRTGNTFINIMPRLSSLTINYCSKLKAL-----PDHIHQTTTLKE 905 (938)
Q Consensus 831 ~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l-----p~~l~~l~~L~~ 905 (938)
....+.|+.|.+.+|.-...-. ..+...++|.|++|.++.|..++.. ...-.....|..
T Consensus 342 ----------~rn~~~Le~l~~e~~~~~~d~t------L~sls~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~ 405 (483)
T KOG4341|consen 342 ----------GRNCPHLERLDLEECGLITDGT------LASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEV 405 (483)
T ss_pred ----------hcCChhhhhhcccccceehhhh------HhhhccCCchhccCChhhhhhhhhhhhhhhhhccccccccce
Confidence 2367888888887765322221 1222337999999999999877654 333456788999
Q ss_pred EEEecCcchHHHhc
Q 002308 906 LRIGECDLLEERYR 919 (938)
Q Consensus 906 L~l~~c~~l~~~~~ 919 (938)
+.+++||.+++...
T Consensus 406 lEL~n~p~i~d~~L 419 (483)
T KOG4341|consen 406 LELDNCPLITDATL 419 (483)
T ss_pred eeecCCCCchHHHH
Confidence 99999999988643
No 90
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.36 E-value=9.3e-06 Score=91.61 Aligned_cols=183 Identities=15% Similarity=0.156 Sum_probs=113.1
Q ss_pred CceecchhhHHHHHHHHhccCcccCCCeEEEEEEccCCChHHHHHHHHhhhhhhh-------------------cccCeE
Q 002308 150 EEICGRVGERNALLSMLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNHVEVK-------------------REFDKT 210 (938)
Q Consensus 150 ~~~vGr~~~~~~l~~~l~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~v~~~~~~~-------------------~~f~~~ 210 (938)
.++||.+..++.+..++.... -.+.+.++|+.|+||||+|+.+++..--. +.|..+
T Consensus 16 ~divGq~~v~~~L~~~~~~~~-----l~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~C~~i~~g~~~d~ 90 (509)
T PRK14958 16 QEVIGQAPVVRALSNALDQQY-----LHHAYLFTGTRGVGKTTISRILAKCLNCEKGVSANPCNDCENCREIDEGRFPDL 90 (509)
T ss_pred HHhcCCHHHHHHHHHHHHhCC-----CCeeEEEECCCCCCHHHHHHHHHHHhcCCCCCCcccCCCCHHHHHHhcCCCceE
Confidence 568999999999999997532 34567899999999999999988842111 112223
Q ss_pred EEEEeCCCCCHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHhcCceEEEEEecCCCCCccChhHHHHhhhCCCCCcEEE
Q 002308 211 LWVCVSETFDEFRIAKAMLEALTGSTSNLNALQSLLISIDESIAGKRFLLVLDDVWDGDYIKWEPFYRCLKKGLHGSKIL 290 (938)
Q Consensus 211 ~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~il 290 (938)
+.+..+....++++ +++++.+... -..++.-++|+|+++......++.+...+......+++|
T Consensus 91 ~eidaas~~~v~~i-R~l~~~~~~~----------------p~~~~~kV~iIDE~~~ls~~a~naLLk~LEepp~~~~fI 153 (509)
T PRK14958 91 FEVDAASRTKVEDT-RELLDNIPYA----------------PTKGRFKVYLIDEVHMLSGHSFNALLKTLEEPPSHVKFI 153 (509)
T ss_pred EEEcccccCCHHHH-HHHHHHHhhc----------------cccCCcEEEEEEChHhcCHHHHHHHHHHHhccCCCeEEE
Confidence 33333222222221 1222221110 113455689999998876667777888777665667666
Q ss_pred EEcCCh-hhhhh-hcCCceEeCCCCChHHHHHHHHHhhcCCCCCchhhHHHHHHHHHHHhcCCChhHHHH
Q 002308 291 ITTRKE-SIVSM-MRSTDIISIEELAEEECWVLFKRLAFFGRSTEECEKLEQIGQRIARKCKGLPLAAKT 358 (938)
Q Consensus 291 vTtr~~-~v~~~-~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~ 358 (938)
++|.+. .+... ......+++.+++.++....+...+...+.... .+....|++.++|.+..+..
T Consensus 154 lattd~~kl~~tI~SRc~~~~f~~l~~~~i~~~l~~il~~egi~~~----~~al~~ia~~s~GslR~al~ 219 (509)
T PRK14958 154 LATTDHHKLPVTVLSRCLQFHLAQLPPLQIAAHCQHLLKEENVEFE----NAALDLLARAANGSVRDALS 219 (509)
T ss_pred EEECChHhchHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCcHHHHHH
Confidence 655443 33322 233567899999999988877766543332222 22356788888888765543
No 91
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.36 E-value=4.2e-08 Score=109.57 Aligned_cols=215 Identities=29% Similarity=0.276 Sum_probs=150.3
Q ss_pred cCCCeeEEecCCCCCCcccCccccccCCCCeeeecCCccccccccccCCCCccEEEcCCCCCcccccccccccCccceee
Q 002308 566 ESTSLRALDFPSFYLPLEIPRNIEKLVHLRYLNLSDQKIKKLPETLCELYNLEKLDISGCSDLRELPKGIGKLINMKHLL 645 (938)
Q Consensus 566 ~~~~Lr~L~L~~n~~~~~lp~~~~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~l~~~~~l~~lp~~i~~l~~L~~L~ 645 (938)
.+..++.+.+..|. +..+-..++.+.+|.+|++.+|.|..+...+..+++|++|++++|. +..+.. +..++.|+.|+
T Consensus 70 ~l~~l~~l~l~~n~-i~~~~~~l~~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~-I~~i~~-l~~l~~L~~L~ 146 (414)
T KOG0531|consen 70 SLTSLKELNLRQNL-IAKILNHLSKLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNK-ITKLEG-LSTLTLLKELN 146 (414)
T ss_pred HhHhHHhhccchhh-hhhhhcccccccceeeeeccccchhhcccchhhhhcchheeccccc-cccccc-hhhccchhhhe
Confidence 45566666677777 4444455788999999999999999888778999999999999998 555543 67788899999
Q ss_pred cCCCcccccCCccCCCCCCCcccCeeEecCCCCCCCCcccc--cccccccccCcceeecCcCCCCChhhhhhhhccCCCc
Q 002308 646 NSGTRSLRYMPVGIGRLTGLRTLGEFHVSAGGGVDGSKACR--LESLKNLEHLQVCCIRRLGDVSDVGEAKLLELDKKKY 723 (938)
Q Consensus 646 l~~~~~~~~~p~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~--l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~~~~ 723 (938)
+.+|.+.. + .++..+.+|+.+++.+|.+.. ... ...+.+++.+.+.+|...... .+.....
T Consensus 147 l~~N~i~~-~-~~~~~l~~L~~l~l~~n~i~~------ie~~~~~~~~~l~~l~l~~n~i~~i~---------~~~~~~~ 209 (414)
T KOG0531|consen 147 LSGNLISD-I-SGLESLKSLKLLDLSYNRIVD------IENDELSELISLEELDLGGNSIREIE---------GLDLLKK 209 (414)
T ss_pred eccCcchh-c-cCCccchhhhcccCCcchhhh------hhhhhhhhccchHHHhccCCchhccc---------chHHHHH
Confidence 99995443 2 356668899999999988765 222 366777888887777654322 1222333
Q ss_pred CCceEEEEecCCCCCCCCCccchHHHHhhCCCCCC--CCeEEEeeecCCCCCCCchhccCCCCEEEEecCCCCCcCCCCC
Q 002308 724 LSRLRLEFDKKGGGGGRRKNEDDQLLLEALQPPLN--LKELEIHYYGGNTVFPSWMASLTNLKSLDLCFCENCEQLPPLG 801 (938)
Q Consensus 724 L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~~~~--L~~L~l~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~l~~l~ 801 (938)
+..+++..|.+.. .+.+..... |+.+++.+|++.. .+..+..+.++..|++.+|.+. ....+.
T Consensus 210 l~~~~l~~n~i~~-------------~~~l~~~~~~~L~~l~l~~n~i~~-~~~~~~~~~~l~~l~~~~n~~~-~~~~~~ 274 (414)
T KOG0531|consen 210 LVLLSLLDNKISK-------------LEGLNELVMLHLRELYLSGNRISR-SPEGLENLKNLPVLDLSSNRIS-NLEGLE 274 (414)
T ss_pred HHHhhccccccee-------------ccCcccchhHHHHHHhcccCcccc-ccccccccccccccchhhcccc-cccccc
Confidence 4444566665542 223333333 8899999999887 5566778889999999988543 233355
Q ss_pred CCCccceeeccccc
Q 002308 802 KLPSLEQLFISYMS 815 (938)
Q Consensus 802 ~l~~L~~L~L~~~~ 815 (938)
..+.+..+.+..+.
T Consensus 275 ~~~~~~~~~~~~~~ 288 (414)
T KOG0531|consen 275 RLPKLSELWLNDNK 288 (414)
T ss_pred ccchHHHhccCcch
Confidence 66666777776665
No 92
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=98.35 E-value=1.9e-05 Score=85.09 Aligned_cols=198 Identities=13% Similarity=0.072 Sum_probs=117.2
Q ss_pred CCceecchhhHHHHHHHHhccCcccCCCeEEEEEEccCCChHHHHHHHHhhhhhhhcccCeEEE---EEeCCCCCHHHHH
Q 002308 149 EEEICGRVGERNALLSMLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNHVEVKREFDKTLW---VCVSETFDEFRIA 225 (938)
Q Consensus 149 ~~~~vGr~~~~~~l~~~l~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~w---v~~~~~~~~~~~~ 225 (938)
...++|.+...+.+.+.+.... -..-+.++|+.|+||+|+|..+++..--......... .........-...
T Consensus 18 ~~~iiGq~~~~~~L~~~~~~~r-----l~HA~Lf~Gp~G~GK~~lA~~~A~~Llc~~~~~~~~~~~~~~~l~~~~~c~~c 92 (365)
T PRK07471 18 TTALFGHAAAEAALLDAYRSGR-----LHHAWLIGGPQGIGKATLAYRMARFLLATPPPGGDGAVPPPTSLAIDPDHPVA 92 (365)
T ss_pred hhhccChHHHHHHHHHHHHcCC-----CCceEEEECCCCCCHHHHHHHHHHHHhCCCCCCCCccccccccccCCCCChHH
Confidence 3579999999999999987532 3567899999999999999988885311111000000 0000000000111
Q ss_pred HHHHHHh-------cC---CC----CCCCcHHHHHHHHHHHhc-----CceEEEEEecCCCCCccChhHHHHhhhCCCCC
Q 002308 226 KAMLEAL-------TG---ST----SNLNALQSLLISIDESIA-----GKRFLLVLDDVWDGDYIKWEPFYRCLKKGLHG 286 (938)
Q Consensus 226 ~~i~~~l-------~~---~~----~~~~~~~~~~~~l~~~l~-----~~~~LlVlDdv~~~~~~~~~~l~~~l~~~~~g 286 (938)
+.+...- .. .. .....++++ +.+.+.+. +.+-++|+|+++..+......+...+..-..+
T Consensus 93 ~~i~~~~HPDl~~i~~~~~~~~~~~~~~I~Vdqi-R~l~~~~~~~~~~~~~kVviIDead~m~~~aanaLLK~LEepp~~ 171 (365)
T PRK07471 93 RRIAAGAHGGLLTLERSWNEKGKRLRTVITVDEV-RELISFFGLTAAEGGWRVVIVDTADEMNANAANALLKVLEEPPAR 171 (365)
T ss_pred HHHHccCCCCeEEEecccccccccccccccHHHH-HHHHHHhCcCcccCCCEEEEEechHhcCHHHHHHHHHHHhcCCCC
Confidence 1111100 00 00 011223442 23333332 55679999999888777777888888765556
Q ss_pred cEEEEEcCChh-hhhh-hcCCceEeCCCCChHHHHHHHHHhhcCCCCCchhhHHHHHHHHHHHhcCCChhHHHHHH
Q 002308 287 SKILITTRKES-IVSM-MRSTDIISIEELAEEECWVLFKRLAFFGRSTEECEKLEQIGQRIARKCKGLPLAAKTMG 360 (938)
Q Consensus 287 s~ilvTtr~~~-v~~~-~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~~~ 360 (938)
+.+|++|.+.+ +... ......+.+.+++.++..+++...... ... .....+++.++|.|.....+.
T Consensus 172 ~~~IL~t~~~~~llpti~SRc~~i~l~~l~~~~i~~~L~~~~~~----~~~----~~~~~l~~~s~Gsp~~Al~ll 239 (365)
T PRK07471 172 SLFLLVSHAPARLLPTIRSRCRKLRLRPLAPEDVIDALAAAGPD----LPD----DPRAALAALAEGSVGRALRLA 239 (365)
T ss_pred eEEEEEECCchhchHHhhccceEEECCCCCHHHHHHHHHHhccc----CCH----HHHHHHHHHcCCCHHHHHHHh
Confidence 66777776653 3222 244679999999999999999876421 111 112578999999998765554
No 93
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=98.33 E-value=1.3e-05 Score=87.15 Aligned_cols=182 Identities=10% Similarity=0.084 Sum_probs=110.4
Q ss_pred CceecchhhHHHHHHHHhccCcc----cCCCeEEEEEEccCCChHHHHHHHHhhhhhhhc------------------cc
Q 002308 150 EEICGRVGERNALLSMLLCESSE----QQKGLHIISIVGMGGIGKTTLAQLACNHVEVKR------------------EF 207 (938)
Q Consensus 150 ~~~vGr~~~~~~l~~~l~~~~~~----~~~~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~------------------~f 207 (938)
+.++|.+..++.+..++..+... ...-.+-+.++|++|+|||++|..++....-.. .+
T Consensus 5 ~~IiGq~~~~~~L~~~i~~~~~~~~~~~~~l~ha~Lf~Gp~G~GKt~lA~~lA~~l~c~~~~~~~Cg~C~~C~~~~~~~h 84 (394)
T PRK07940 5 DDLVGQEAVVAELRAAARAARADVAAAGSGMTHAWLFTGPPGSGRSVAARAFAAALQCTDPDEPGCGECRACRTVLAGTH 84 (394)
T ss_pred hhccChHHHHHHHHHHHHhccccccccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCC
Confidence 46889999999999999764310 011346688999999999999999877321100 01
Q ss_pred CeEEEEEeCCCCCHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHH----hcCceEEEEEecCCCCCccChhHHHHhhhCC
Q 002308 208 DKTLWVCVSETFDEFRIAKAMLEALTGSTSNLNALQSLLISIDES----IAGKRFLLVLDDVWDGDYIKWEPFYRCLKKG 283 (938)
Q Consensus 208 ~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~----l~~~~~LlVlDdv~~~~~~~~~~l~~~l~~~ 283 (938)
.-+.++.... .....+++...+... ..+++-++|+|+++.........+...+...
T Consensus 85 pD~~~i~~~~--------------------~~i~i~~iR~l~~~~~~~p~~~~~kViiIDead~m~~~aanaLLk~LEep 144 (394)
T PRK07940 85 PDVRVVAPEG--------------------LSIGVDEVRELVTIAARRPSTGRWRIVVIEDADRLTERAANALLKAVEEP 144 (394)
T ss_pred CCEEEecccc--------------------ccCCHHHHHHHHHHHHhCcccCCcEEEEEechhhcCHHHHHHHHHHhhcC
Confidence 1111211100 111122222111111 1245558888999887666666777777665
Q ss_pred CCCcEEEEEcCCh-hhhhh-hcCCceEeCCCCChHHHHHHHHHhhcCCCCCchhhHHHHHHHHHHHhcCCChhHHHHHH
Q 002308 284 LHGSKILITTRKE-SIVSM-MRSTDIISIEELAEEECWVLFKRLAFFGRSTEECEKLEQIGQRIARKCKGLPLAAKTMG 360 (938)
Q Consensus 284 ~~gs~ilvTtr~~-~v~~~-~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~~~ 360 (938)
..+..+|++|.+. .+... .+....+.+.+++.++..+.+..... . . .+.+..+++.++|.|.....++
T Consensus 145 ~~~~~fIL~a~~~~~llpTIrSRc~~i~f~~~~~~~i~~~L~~~~~-----~-~---~~~a~~la~~s~G~~~~A~~l~ 214 (394)
T PRK07940 145 PPRTVWLLCAPSPEDVLPTIRSRCRHVALRTPSVEAVAEVLVRRDG-----V-D---PETARRAARASQGHIGRARRLA 214 (394)
T ss_pred CCCCeEEEEECChHHChHHHHhhCeEEECCCCCHHHHHHHHHHhcC-----C-C---HHHHHHHHHHcCCCHHHHHHHh
Confidence 5666666666554 34433 34467999999999999988875321 1 1 2236788999999997654443
No 94
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=98.33 E-value=1.3e-05 Score=81.61 Aligned_cols=153 Identities=11% Similarity=0.095 Sum_probs=90.3
Q ss_pred CeEEEEEEccCCChHHHHHHHHhhhhhhhcccCeEEEEEeCCCCCHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHhcC
Q 002308 176 GLHIISIVGMGGIGKTTLAQLACNHVEVKREFDKTLWVCVSETFDEFRIAKAMLEALTGSTSNLNALQSLLISIDESIAG 255 (938)
Q Consensus 176 ~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~ 255 (938)
..+.+.|+|+.|+|||+||+.+++... .... .+.+++..... .. + ... .
T Consensus 41 ~~~~~~l~G~~G~GKT~La~ai~~~~~-~~~~-~~~~i~~~~~~------~~----~------------------~~~-~ 89 (227)
T PRK08903 41 ADRFFYLWGEAGSGRSHLLQALVADAS-YGGR-NARYLDAASPL------LA----F------------------DFD-P 89 (227)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHH-hCCC-cEEEEehHHhH------HH----H------------------hhc-c
Confidence 446789999999999999999998532 2222 34455543311 00 0 011 2
Q ss_pred ceEEEEEecCCCCCccChhHHHHhhhCC-CCCc-EEEEEcCChhhhh--------hhcCCceEeCCCCChHHHHHHHHHh
Q 002308 256 KRFLLVLDDVWDGDYIKWEPFYRCLKKG-LHGS-KILITTRKESIVS--------MMRSTDIISIEELAEEECWVLFKRL 325 (938)
Q Consensus 256 ~~~LlVlDdv~~~~~~~~~~l~~~l~~~-~~gs-~ilvTtr~~~v~~--------~~~~~~~~~l~~L~~~~~~~lf~~~ 325 (938)
..-+||+||+...+...-..+...+... ..+. .||+|++...... .+.....+++.++++++-..++.+.
T Consensus 90 ~~~~liiDdi~~l~~~~~~~L~~~~~~~~~~~~~~vl~~~~~~~~~~~l~~~L~sr~~~~~~i~l~pl~~~~~~~~l~~~ 169 (227)
T PRK08903 90 EAELYAVDDVERLDDAQQIALFNLFNRVRAHGQGALLVAGPAAPLALPLREDLRTRLGWGLVYELKPLSDADKIAALKAA 169 (227)
T ss_pred cCCEEEEeChhhcCchHHHHHHHHHHHHHHcCCcEEEEeCCCCHHhCCCCHHHHHHHhcCeEEEecCCCHHHHHHHHHHH
Confidence 2347889999765433333455555432 2343 3667766432111 2223468899999998877777765
Q ss_pred hcCCCCCchhhHHHHHHHHHHHhcCCChhHHHHHHhhh
Q 002308 326 AFFGRSTEECEKLEQIGQRIARKCKGLPLAAKTMGSLM 363 (938)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~~~~~l 363 (938)
+...+.. -.++..+.+++.+.|.+..+..+...+
T Consensus 170 ~~~~~v~----l~~~al~~L~~~~~gn~~~l~~~l~~l 203 (227)
T PRK08903 170 AAERGLQ----LADEVPDYLLTHFRRDMPSLMALLDAL 203 (227)
T ss_pred HHHcCCC----CCHHHHHHHHHhccCCHHHHHHHHHHH
Confidence 4322211 122446788888999998887776654
No 95
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.33 E-value=1.5e-05 Score=90.87 Aligned_cols=197 Identities=13% Similarity=0.159 Sum_probs=113.5
Q ss_pred CceecchhhHHHHHHHHhccCcccCCCeEEEEEEccCCChHHHHHHHHhhhhhhhccc--CeEEEEEeCCCCCHHHHHHH
Q 002308 150 EEICGRVGERNALLSMLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNHVEVKREF--DKTLWVCVSETFDEFRIAKA 227 (938)
Q Consensus 150 ~~~vGr~~~~~~l~~~l~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f--~~~~wv~~~~~~~~~~~~~~ 227 (938)
+++||.+..++.+..++.... -.+.+.++|+.|+||||+|+.+++...-.... ..... ..++.-.....
T Consensus 16 ~dviGQe~vv~~L~~~l~~~r-----l~ha~Lf~Gp~GvGKTtlAr~lAk~LnC~~~~~~~~~~~----~pCg~C~~C~~ 86 (618)
T PRK14951 16 SEMVGQEHVVQALTNALTQQR-----LHHAYLFTGTRGVGKTTVSRILAKSLNCQGPDGQGGITA----TPCGVCQACRD 86 (618)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHHhcCCCcccccCCCC----CCCCccHHHHH
Confidence 568999998999999887532 45677999999999999999997642110000 00000 01111111111
Q ss_pred HHHHh-----cCCCCCCCcHHHHHHHHHHH----hcCceEEEEEecCCCCCccChhHHHHhhhCCCCCcEEEEEc-CChh
Q 002308 228 MLEAL-----TGSTSNLNALQSLLISIDES----IAGKRFLLVLDDVWDGDYIKWEPFYRCLKKGLHGSKILITT-RKES 297 (938)
Q Consensus 228 i~~~l-----~~~~~~~~~~~~~~~~l~~~----l~~~~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTt-r~~~ 297 (938)
|...- ..........++....+... ..++.-++|||+++......++.++..+..-....++|++| ....
T Consensus 87 i~~g~h~D~~eldaas~~~Vd~iReli~~~~~~p~~g~~KV~IIDEvh~Ls~~a~NaLLKtLEEPP~~~~fIL~Ttd~~k 166 (618)
T PRK14951 87 IDSGRFVDYTELDAASNRGVDEVQQLLEQAVYKPVQGRFKVFMIDEVHMLTNTAFNAMLKTLEEPPEYLKFVLATTDPQK 166 (618)
T ss_pred HHcCCCCceeecCcccccCHHHHHHHHHHHHhCcccCCceEEEEEChhhCCHHHHHHHHHhcccCCCCeEEEEEECCchh
Confidence 11000 00000111222322222211 12445589999998877667777777776655555666555 4333
Q ss_pred hhhh-hcCCceEeCCCCChHHHHHHHHHhhcCCCCCchhhHHHHHHHHHHHhcCCChhHHHHH
Q 002308 298 IVSM-MRSTDIISIEELAEEECWVLFKRLAFFGRSTEECEKLEQIGQRIARKCKGLPLAAKTM 359 (938)
Q Consensus 298 v~~~-~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~~ 359 (938)
+... ......+++.+++.++..+.+...+...+.... .+....|++.++|.+..+..+
T Consensus 167 il~TIlSRc~~~~f~~Ls~eei~~~L~~i~~~egi~ie----~~AL~~La~~s~GslR~al~l 225 (618)
T PRK14951 167 VPVTVLSRCLQFNLRPMAPETVLEHLTQVLAAENVPAE----PQALRLLARAARGSMRDALSL 225 (618)
T ss_pred hhHHHHHhceeeecCCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCCHHHHHHH
Confidence 3322 344678999999999999998887644332222 233678888999877555443
No 96
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=98.33 E-value=1.9e-05 Score=77.70 Aligned_cols=90 Identities=12% Similarity=0.173 Sum_probs=64.2
Q ss_pred CceEEEEEecCCCCCccChhHHHHhhhCCCCCcEEEEEcCCh-hhhhhh-cCCceEeCCCCChHHHHHHHHHhhcCCCCC
Q 002308 255 GKRFLLVLDDVWDGDYIKWEPFYRCLKKGLHGSKILITTRKE-SIVSMM-RSTDIISIEELAEEECWVLFKRLAFFGRST 332 (938)
Q Consensus 255 ~~~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtr~~-~v~~~~-~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~ 332 (938)
+.+-++|+||++......++.+...+......+.+|++|++. .+...+ .....+++.+++.++..+.+... + .
T Consensus 95 ~~~kviiide~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~~~l~~~i~sr~~~~~~~~~~~~~~~~~l~~~--g--i- 169 (188)
T TIGR00678 95 SGRRVVIIEDAERMNEAAANALLKTLEEPPPNTLFILITPSPEKLLPTIRSRCQVLPFPPLSEEALLQWLIRQ--G--I- 169 (188)
T ss_pred CCeEEEEEechhhhCHHHHHHHHHHhcCCCCCeEEEEEECChHhChHHHHhhcEEeeCCCCCHHHHHHHHHHc--C--C-
Confidence 456689999998766566777888887755666677776654 222222 33568999999999999888876 1 1
Q ss_pred chhhHHHHHHHHHHHhcCCChh
Q 002308 333 EECEKLEQIGQRIARKCKGLPL 354 (938)
Q Consensus 333 ~~~~~~~~~~~~i~~~~~g~Pl 354 (938)
. .+.+..|++.++|.|.
T Consensus 170 -~----~~~~~~i~~~~~g~~r 186 (188)
T TIGR00678 170 -S----EEAAELLLALAGGSPG 186 (188)
T ss_pred -C----HHHHHHHHHHcCCCcc
Confidence 1 2347899999999885
No 97
>KOG2227 consensus Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase [Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=98.32 E-value=1.6e-05 Score=83.96 Aligned_cols=214 Identities=13% Similarity=0.111 Sum_probs=134.2
Q ss_pred CCCceecchhhHHHHHHHHhccCcccCCCeEEEEEEccCCChHHHHHHHHhhhhhhhcccCeEEEEEeCCCCCHHHHHHH
Q 002308 148 DEEEICGRVGERNALLSMLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNHVEVKREFDKTLWVCVSETFDEFRIAKA 227 (938)
Q Consensus 148 ~~~~~vGr~~~~~~l~~~l~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~ 227 (938)
.+..++||+.|+..+.+++...-+ ....+-+.|.|.+|.|||.+...++.+..-...=..++++++..-....+++..
T Consensus 148 ~p~~l~gRe~e~~~v~~F~~~hle--~~t~gSlYVsG~PGtgkt~~l~rvl~~~~~~~~~~~~v~inc~sl~~~~aiF~k 225 (529)
T KOG2227|consen 148 PPGTLKGRELEMDIVREFFSLHLE--LNTSGSLYVSGQPGTGKTALLSRVLDSLSKSSKSPVTVYINCTSLTEASAIFKK 225 (529)
T ss_pred CCCCccchHHHHHHHHHHHHhhhh--cccCcceEeeCCCCcchHHHHHHHHHhhhhhcccceeEEEeeccccchHHHHHH
Confidence 356799999999999999986554 456788999999999999999999886322111135678887776778888888
Q ss_pred HHHHhcCCCCCCCcHHHHHHHHHHHhcC--ceEEEEEecCCCCCccChhHHHHhhhC-CCCCcEEEEEcCChh--hh---
Q 002308 228 MLEALTGSTSNLNALQSLLISIDESIAG--KRFLLVLDDVWDGDYIKWEPFYRCLKK-GLHGSKILITTRKES--IV--- 299 (938)
Q Consensus 228 i~~~l~~~~~~~~~~~~~~~~l~~~l~~--~~~LlVlDdv~~~~~~~~~~l~~~l~~-~~~gs~ilvTtr~~~--v~--- 299 (938)
|...+...........+.+..+.++..+ +.+|+|+|.++.-....-..+...|.+ .-+++++|+.---.. ..
T Consensus 226 I~~~~~q~~~s~~~~~~~~~~~~~h~~q~k~~~llVlDEmD~L~tr~~~vLy~lFewp~lp~sr~iLiGiANslDlTdR~ 305 (529)
T KOG2227|consen 226 IFSSLLQDLVSPGTGMQHLEKFEKHTKQSKFMLLLVLDEMDHLITRSQTVLYTLFEWPKLPNSRIILIGIANSLDLTDRF 305 (529)
T ss_pred HHHHHHHHhcCCchhHHHHHHHHHHHhcccceEEEEechhhHHhhcccceeeeehhcccCCcceeeeeeehhhhhHHHHH
Confidence 8888732211111224445555555554 368999999865433333445555554 346777665322111 00
Q ss_pred -hhh-----cCCceEeCCCCChHHHHHHHHHhhcCCCCC-chhhHHHHHHHHHHHhcCCChhHHHHHHhhh
Q 002308 300 -SMM-----RSTDIISIEELAEEECWVLFKRLAFFGRST-EECEKLEQIGQRIARKCKGLPLAAKTMGSLM 363 (938)
Q Consensus 300 -~~~-----~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~-~~~~~~~~~~~~i~~~~~g~Plai~~~~~~l 363 (938)
... -....+...|-+.++-.+++..+.-..... ..+..++-.|++++...|.+--|+-+.-+.+
T Consensus 306 LprL~~~~~~~P~~l~F~PYTk~qI~~Il~~rl~~~~t~~~~~~Aie~~ArKvaa~SGDlRkaLdv~R~ai 376 (529)
T KOG2227|consen 306 LPRLNLDLTIKPKLLVFPPYTKDQIVEILQQRLSEESTSIFLNAAIELCARKVAAPSGDLRKALDVCRRAI 376 (529)
T ss_pred hhhhhhccCCCCceeeecCCCHHHHHHHHHHHHhcccccccchHHHHHHHHHhccCchhHHHHHHHHHHHH
Confidence 001 124578889999999999999886433221 2233444445555555555555555544333
No 98
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=98.32 E-value=7e-06 Score=95.98 Aligned_cols=173 Identities=19% Similarity=0.260 Sum_probs=97.9
Q ss_pred CceecchhhHH---HHHHHHhccCcccCCCeEEEEEEccCCChHHHHHHHHhhhhhhhcccCeEEEEEeCCCCCHHHHHH
Q 002308 150 EEICGRVGERN---ALLSMLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNHVEVKREFDKTLWVCVSETFDEFRIAK 226 (938)
Q Consensus 150 ~~~vGr~~~~~---~l~~~l~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~ 226 (938)
++|+|++..+. .+.+.+.. .....+.++|++|+||||+|+.+++. ...+|. .+++.. ..+.
T Consensus 28 dd~vGQe~ii~~~~~L~~~i~~------~~~~slLL~GPpGtGKTTLA~aIA~~--~~~~f~---~lna~~-~~i~---- 91 (725)
T PRK13341 28 EEFVGQDHILGEGRLLRRAIKA------DRVGSLILYGPPGVGKTTLARIIANH--TRAHFS---SLNAVL-AGVK---- 91 (725)
T ss_pred HHhcCcHHHhhhhHHHHHHHhc------CCCceEEEECCCCCCHHHHHHHHHHH--hcCcce---eehhhh-hhhH----
Confidence 46899888774 45555543 24556789999999999999999984 344441 111110 0011
Q ss_pred HHHHHhcCCCCCCCcHHHHHHHHHHHh--cCceEEEEEecCCCCCccChhHHHHhhhCCCCCcEEEEE--cCChh--hhh
Q 002308 227 AMLEALTGSTSNLNALQSLLISIDESI--AGKRFLLVLDDVWDGDYIKWEPFYRCLKKGLHGSKILIT--TRKES--IVS 300 (938)
Q Consensus 227 ~i~~~l~~~~~~~~~~~~~~~~l~~~l--~~~~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvT--tr~~~--v~~ 300 (938)
+..+........+ .+++.++||||++......++.+...+. .|+.++|+ |.++. +..
T Consensus 92 --------------dir~~i~~a~~~l~~~~~~~IL~IDEIh~Ln~~qQdaLL~~lE---~g~IiLI~aTTenp~~~l~~ 154 (725)
T PRK13341 92 --------------DLRAEVDRAKERLERHGKRTILFIDEVHRFNKAQQDALLPWVE---NGTITLIGATTENPYFEVNK 154 (725)
T ss_pred --------------HHHHHHHHHHHHhhhcCCceEEEEeChhhCCHHHHHHHHHHhc---CceEEEEEecCCChHhhhhh
Confidence 1111111121111 2467799999998765444555554443 35555553 44431 212
Q ss_pred h-hcCCceEeCCCCChHHHHHHHHHhhcCCC---CCchhhHHHHHHHHHHHhcCCChhH
Q 002308 301 M-MRSTDIISIEELAEEECWVLFKRLAFFGR---STEECEKLEQIGQRIARKCKGLPLA 355 (938)
Q Consensus 301 ~-~~~~~~~~l~~L~~~~~~~lf~~~~~~~~---~~~~~~~~~~~~~~i~~~~~g~Pla 355 (938)
. ......+.+.+++.++...++.+.+.... ......-.++..+.|++.+.|.-..
T Consensus 155 aL~SR~~v~~l~pLs~edi~~IL~~~l~~~~~~~g~~~v~I~deaL~~La~~s~GD~R~ 213 (725)
T PRK13341 155 ALVSRSRLFRLKSLSDEDLHQLLKRALQDKERGYGDRKVDLEPEAEKHLVDVANGDARS 213 (725)
T ss_pred HhhccccceecCCCCHHHHHHHHHHHHHHHHhhcCCcccCCCHHHHHHHHHhCCCCHHH
Confidence 1 12346799999999999999988653100 0000111234467788888886543
No 99
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.31 E-value=1.3e-05 Score=91.09 Aligned_cols=181 Identities=16% Similarity=0.163 Sum_probs=109.5
Q ss_pred CceecchhhHHHHHHHHhccCcccCCCeEEEEEEccCCChHHHHHHHHhhhhhhhc-------------------ccCeE
Q 002308 150 EEICGRVGERNALLSMLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNHVEVKR-------------------EFDKT 210 (938)
Q Consensus 150 ~~~vGr~~~~~~l~~~l~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~-------------------~f~~~ 210 (938)
..++|.+..++.+..++.... -.+.+.++|+.|+||||+|+.+++...-.. .|...
T Consensus 16 ~divGq~~v~~~L~~~i~~~~-----~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pcg~C~~C~~i~~~~~~d~ 90 (527)
T PRK14969 16 SELVGQEHVVRALTNALEQQR-----LHHAYLFTGTRGVGKTTLARILAKSLNCETGVTATPCGVCSACLEIDSGRFVDL 90 (527)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-----CCEEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCce
Confidence 568999999999999887532 346678999999999999999987421110 11112
Q ss_pred EEEEeCCCCCHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHhcCceEEEEEecCCCCCccChhHHHHhhhCCCCCcEEE
Q 002308 211 LWVCVSETFDEFRIAKAMLEALTGSTSNLNALQSLLISIDESIAGKRFLLVLDDVWDGDYIKWEPFYRCLKKGLHGSKIL 290 (938)
Q Consensus 211 ~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~il 290 (938)
+++..+....++. .+++++..... -..+++-++|+|+++.......+.+...+......+.+|
T Consensus 91 ~ei~~~~~~~vd~-ir~l~~~~~~~----------------p~~~~~kVvIIDEad~ls~~a~naLLK~LEepp~~~~fI 153 (527)
T PRK14969 91 IEVDAASNTQVDA-MRELLDNAQYA----------------PTRGRFKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVKFI 153 (527)
T ss_pred eEeeccccCCHHH-HHHHHHHHhhC----------------cccCCceEEEEcCcccCCHHHHHHHHHHHhCCCCCEEEE
Confidence 2222211111111 11122111100 013566799999998776556777787877655566666
Q ss_pred EEcCCh-hhhhh-hcCCceEeCCCCChHHHHHHHHHhhcCCCCCchhhHHHHHHHHHHHhcCCChhHH
Q 002308 291 ITTRKE-SIVSM-MRSTDIISIEELAEEECWVLFKRLAFFGRSTEECEKLEQIGQRIARKCKGLPLAA 356 (938)
Q Consensus 291 vTtr~~-~v~~~-~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai 356 (938)
++|.++ .+... ......+++.+++.++..+.+.+.+...+.... ......|++.++|.+--+
T Consensus 154 L~t~d~~kil~tI~SRc~~~~f~~l~~~~i~~~L~~il~~egi~~~----~~al~~la~~s~Gslr~a 217 (527)
T PRK14969 154 LATTDPQKIPVTVLSRCLQFNLKQMPPPLIVSHLQHILEQENIPFD----ATALQLLARAAAGSMRDA 217 (527)
T ss_pred EEeCChhhCchhHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCCHHHH
Confidence 555443 33222 233568999999999999888776543222111 223578888999977543
No 100
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.30 E-value=7.4e-07 Score=69.00 Aligned_cols=58 Identities=29% Similarity=0.450 Sum_probs=29.7
Q ss_pred CeeEEecCCCCCCcccCccccccCCCCeeeecCCccccccc-cccCCCCccEEEcCCCC
Q 002308 569 SLRALDFPSFYLPLEIPRNIEKLVHLRYLNLSDQKIKKLPE-TLCELYNLEKLDISGCS 626 (938)
Q Consensus 569 ~Lr~L~L~~n~~~~~lp~~~~~l~~L~~L~L~~~~i~~lp~-~i~~l~~L~~L~l~~~~ 626 (938)
+|++|++++|.+....+..|..+++|++|++++|.++.+|+ .|..+++|++|++++|+
T Consensus 2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence 45555555555222222345555555555555555554443 44555555555555554
No 101
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=98.30 E-value=1e-06 Score=89.29 Aligned_cols=91 Identities=20% Similarity=0.135 Sum_probs=62.7
Q ss_pred CeEEEEEEccCCChHHHHHHHHhhhhhhhcccCeEEEEEeCCC--CCHHHHHHHHHHHhcCCCCCCCcHH------HHHH
Q 002308 176 GLHIISIVGMGGIGKTTLAQLACNHVEVKREFDKTLWVCVSET--FDEFRIAKAMLEALTGSTSNLNALQ------SLLI 247 (938)
Q Consensus 176 ~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~--~~~~~~~~~i~~~l~~~~~~~~~~~------~~~~ 247 (938)
....++|.|++|+|||||+++++++.... +|+..+|+.+.+. .++.++++.+...+-....+..... ....
T Consensus 15 ~Gqr~~I~G~~G~GKTTLlr~I~n~l~~~-~fdv~~~v~vI~er~~ev~el~~~I~~~~v~~~~~~~~~~~~~~~~~~~~ 93 (249)
T cd01128 15 KGQRGLIVAPPKAGKTTLLQSIANAITKN-HPEVYLIVLLIDERPEEVTDMQRSVKGEVIASTFDEPPERHVQVAEMVLE 93 (249)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhccccc-cCCeEEEEEEccCCCccHHHHHHHhccEEEEecCCCCHHHHHHHHHHHHH
Confidence 45678999999999999999999974433 8999999997776 7899999999443332222211111 1112
Q ss_pred HHHH-HhcCceEEEEEecCCC
Q 002308 248 SIDE-SIAGKRFLLVLDDVWD 267 (938)
Q Consensus 248 ~l~~-~l~~~~~LlVlDdv~~ 267 (938)
.... .-.+++.++++|++.+
T Consensus 94 ~a~~~~~~G~~vll~iDei~r 114 (249)
T cd01128 94 KAKRLVEHGKDVVILLDSITR 114 (249)
T ss_pred HHHHHHHCCCCEEEEEECHHH
Confidence 2222 2348999999999954
No 102
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.29 E-value=1.2e-05 Score=88.79 Aligned_cols=199 Identities=17% Similarity=0.212 Sum_probs=113.0
Q ss_pred CceecchhhHHHHHHHHhccCcccCCCeEEEEEEccCCChHHHHHHHHhhhhhhhcccCeEEEEE-eCCCCCHHHHHHHH
Q 002308 150 EEICGRVGERNALLSMLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNHVEVKREFDKTLWVC-VSETFDEFRIAKAM 228 (938)
Q Consensus 150 ~~~vGr~~~~~~l~~~l~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~-~~~~~~~~~~~~~i 228 (938)
.+++|.+...+.+..++... .-.+.+.++|+.|+||||+|..+++...-...+....|.. +..++..-...+.+
T Consensus 16 ~eiiGq~~~~~~L~~~~~~~-----~~~ha~lf~Gp~G~GKtt~A~~~a~~l~c~~~~~~~~~~~~~~~~c~~c~~c~~~ 90 (397)
T PRK14955 16 ADITAQEHITRTIQNSLRMG-----RVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDADYLQEVTEPCGECESCRDF 90 (397)
T ss_pred hhccChHHHHHHHHHHHHhC-----CcceeEEEECCCCCCHHHHHHHHHHHhcCCCCcCcccccccCCCCCCCCHHHHHH
Confidence 57899999999898888743 2345688999999999999999988432111111111110 00111111111111
Q ss_pred HHHhcC-----CCCCCCcHHHHHHHHHHHh-----cCceEEEEEecCCCCCccChhHHHHhhhCCCCCcEEEEEc-CChh
Q 002308 229 LEALTG-----STSNLNALQSLLISIDESI-----AGKRFLLVLDDVWDGDYIKWEPFYRCLKKGLHGSKILITT-RKES 297 (938)
Q Consensus 229 ~~~l~~-----~~~~~~~~~~~~~~l~~~l-----~~~~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTt-r~~~ 297 (938)
...... ........+++... .+.+ .+++-++|+|+++......++.+...+....+.+.+|++| +...
T Consensus 91 ~~~~~~n~~~~~~~~~~~id~Ir~l-~~~~~~~p~~~~~kvvIIdea~~l~~~~~~~LLk~LEep~~~t~~Il~t~~~~k 169 (397)
T PRK14955 91 DAGTSLNISEFDAASNNSVDDIRLL-RENVRYGPQKGRYRVYIIDEVHMLSIAAFNAFLKTLEEPPPHAIFIFATTELHK 169 (397)
T ss_pred hcCCCCCeEeecccccCCHHHHHHH-HHHHhhchhcCCeEEEEEeChhhCCHHHHHHHHHHHhcCCCCeEEEEEeCChHH
Confidence 110000 00011112333322 2222 2455688999998766567788888887665666666555 4333
Q ss_pred hhhhh-cCCceEeCCCCChHHHHHHHHHhhcCCCCCchhhHHHHHHHHHHHhcCCChhHHHH
Q 002308 298 IVSMM-RSTDIISIEELAEEECWVLFKRLAFFGRSTEECEKLEQIGQRIARKCKGLPLAAKT 358 (938)
Q Consensus 298 v~~~~-~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~ 358 (938)
+.... .....+++.++++++..+.+...+...+.... .+.+..|++.++|.+--+..
T Consensus 170 l~~tl~sR~~~v~f~~l~~~ei~~~l~~~~~~~g~~i~----~~al~~l~~~s~g~lr~a~~ 227 (397)
T PRK14955 170 IPATIASRCQRFNFKRIPLEEIQQQLQGICEAEGISVD----ADALQLIGRKAQGSMRDAQS 227 (397)
T ss_pred hHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCCHHHHHH
Confidence 33322 22457899999999998888876543222111 23477899999997754433
No 103
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=98.29 E-value=6.9e-06 Score=81.82 Aligned_cols=185 Identities=16% Similarity=0.144 Sum_probs=116.5
Q ss_pred CCCceecchhhHHHHHHHHhccCcccCCCeEEEEEEccCCChHHHHHHHHhhhhhhhcccCeE-EEEEeCCCCCHHHHHH
Q 002308 148 DEEEICGRVGERNALLSMLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNHVEVKREFDKT-LWVCVSETFDEFRIAK 226 (938)
Q Consensus 148 ~~~~~vGr~~~~~~l~~~l~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~-~wv~~~~~~~~~~~~~ 226 (938)
.-.+++|.+..++.+...+.. ........||++|.|||+-|..+++..--.+.|.+. .-.++|..-...
T Consensus 34 t~de~~gQe~vV~~L~~a~~~------~~lp~~LFyGPpGTGKTStalafar~L~~~~~~~~rvl~lnaSderGis---- 103 (346)
T KOG0989|consen 34 TFDELAGQEHVVQVLKNALLR------RILPHYLFYGPPGTGKTSTALAFARALNCEQLFPCRVLELNASDERGIS---- 103 (346)
T ss_pred cHHhhcchHHHHHHHHHHHhh------cCCceEEeeCCCCCcHhHHHHHHHHHhcCccccccchhhhccccccccc----
Confidence 345789999999999999975 256788999999999999999998853223445443 333444322221
Q ss_pred HHHHHhcCCCCCCCcHHHHHHHHHHHh--cCce-EEEEEecCCCCCccChhHHHHhhhCCCCCcE-EEEEcCChhhhhhh
Q 002308 227 AMLEALTGSTSNLNALQSLLISIDESI--AGKR-FLLVLDDVWDGDYIKWEPFYRCLKKGLHGSK-ILITTRKESIVSMM 302 (938)
Q Consensus 227 ~i~~~l~~~~~~~~~~~~~~~~l~~~l--~~~~-~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~-ilvTtr~~~v~~~~ 302 (938)
+.++ ...+...+.....+.. .-++ -.||||+++....+.|..+...+......++ |+||+--..+...+
T Consensus 104 -vvr~------Kik~fakl~~~~~~~~~~~~~~fKiiIlDEcdsmtsdaq~aLrr~mE~~s~~trFiLIcnylsrii~pi 176 (346)
T KOG0989|consen 104 -VVRE------KIKNFAKLTVLLKRSDGYPCPPFKIIILDECDSMTSDAQAALRRTMEDFSRTTRFILICNYLSRIIRPL 176 (346)
T ss_pred -chhh------hhcCHHHHhhccccccCCCCCcceEEEEechhhhhHHHHHHHHHHHhccccceEEEEEcCChhhCChHH
Confidence 0000 0000000000000000 1123 3889999998888899999999988666665 45555443333332
Q ss_pred -cCCceEeCCCCChHHHHHHHHHhhcCCCCCchhhHHHHHHHHHHHhcCCCh
Q 002308 303 -RSTDIISIEELAEEECWVLFKRLAFFGRSTEECEKLEQIGQRIARKCKGLP 353 (938)
Q Consensus 303 -~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~P 353 (938)
...+-+...+|.+++..+-++..+-.++...+ .+..+.|++.++|-=
T Consensus 177 ~SRC~KfrFk~L~d~~iv~rL~~Ia~~E~v~~d----~~al~~I~~~S~GdL 224 (346)
T KOG0989|consen 177 VSRCQKFRFKKLKDEDIVDRLEKIASKEGVDID----DDALKLIAKISDGDL 224 (346)
T ss_pred HhhHHHhcCCCcchHHHHHHHHHHHHHhCCCCC----HHHHHHHHHHcCCcH
Confidence 33567889999999999999888765544333 334678899998843
No 104
>PRK09087 hypothetical protein; Validated
Probab=98.29 E-value=1.8e-05 Score=79.65 Aligned_cols=143 Identities=17% Similarity=0.200 Sum_probs=87.7
Q ss_pred eEEEEEEccCCChHHHHHHHHhhhhhhhcccCeEEEEEeCCCCCHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHhcCc
Q 002308 177 LHIISIVGMGGIGKTTLAQLACNHVEVKREFDKTLWVCVSETFDEFRIAKAMLEALTGSTSNLNALQSLLISIDESIAGK 256 (938)
Q Consensus 177 ~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~ 256 (938)
.+.+.|+|++|+|||+|++..+... ...|++.. ....++...+ .+
T Consensus 44 ~~~l~l~G~~GsGKThLl~~~~~~~-------~~~~i~~~------~~~~~~~~~~---------------------~~- 88 (226)
T PRK09087 44 SPVVVLAGPVGSGKTHLASIWREKS-------DALLIHPN------EIGSDAANAA---------------------AE- 88 (226)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHhc-------CCEEecHH------HcchHHHHhh---------------------hc-
Confidence 4568999999999999999888732 12244321 1111111111 11
Q ss_pred eEEEEEecCCCCCccChhHHHHhhhCC-CCCcEEEEEcCC---------hhhhhhhcCCceEeCCCCChHHHHHHHHHhh
Q 002308 257 RFLLVLDDVWDGDYIKWEPFYRCLKKG-LHGSKILITTRK---------ESIVSMMRSTDIISIEELAEEECWVLFKRLA 326 (938)
Q Consensus 257 ~~LlVlDdv~~~~~~~~~~l~~~l~~~-~~gs~ilvTtr~---------~~v~~~~~~~~~~~l~~L~~~~~~~lf~~~~ 326 (938)
-+|++||+..... .-..+...+... ..|..||+|++. ++....+.....+++++++.++..+++.+++
T Consensus 89 -~~l~iDDi~~~~~-~~~~lf~l~n~~~~~g~~ilits~~~p~~~~~~~~dL~SRl~~gl~~~l~~pd~e~~~~iL~~~~ 166 (226)
T PRK09087 89 -GPVLIEDIDAGGF-DETGLFHLINSVRQAGTSLLMTSRLWPSSWNVKLPDLKSRLKAATVVEIGEPDDALLSQVIFKLF 166 (226)
T ss_pred -CeEEEECCCCCCC-CHHHHHHHHHHHHhCCCeEEEECCCChHHhccccccHHHHHhCCceeecCCCCHHHHHHHHHHHH
Confidence 2788899965321 122333333321 346679998874 3344445667899999999999999999987
Q ss_pred cCCCCCchhhHHHHHHHHHHHhcCCChhHHHHHH
Q 002308 327 FFGRSTEECEKLEQIGQRIARKCKGLPLAAKTMG 360 (938)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~~~ 360 (938)
...+-. --+++...|++.+.|..-++..+-
T Consensus 167 ~~~~~~----l~~ev~~~La~~~~r~~~~l~~~l 196 (226)
T PRK09087 167 ADRQLY----VDPHVVYYLVSRMERSLFAAQTIV 196 (226)
T ss_pred HHcCCC----CCHHHHHHHHHHhhhhHHHHHHHH
Confidence 543221 223456778888887776665433
No 105
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.29 E-value=7.2e-07 Score=69.06 Aligned_cols=59 Identities=31% Similarity=0.417 Sum_probs=50.5
Q ss_pred CCCCeeeecCCccccccc-cccCCCCccEEEcCCCCCcccccccccccCccceeecCCCc
Q 002308 592 VHLRYLNLSDQKIKKLPE-TLCELYNLEKLDISGCSDLRELPKGIGKLINMKHLLNSGTR 650 (938)
Q Consensus 592 ~~L~~L~L~~~~i~~lp~-~i~~l~~L~~L~l~~~~~l~~lp~~i~~l~~L~~L~l~~~~ 650 (938)
++|++|++++|.++.+|. .|.++++|++|++++|.....-|..|..+++|++|++++|.
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence 478999999999999885 67899999999999998544445678999999999999884
No 106
>PRK05642 DNA replication initiation factor; Validated
Probab=98.28 E-value=2.5e-05 Score=79.39 Aligned_cols=156 Identities=16% Similarity=0.238 Sum_probs=93.8
Q ss_pred eEEEEEEccCCChHHHHHHHHhhhhhhhcccCeEEEEEeCCCCCHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHhcCc
Q 002308 177 LHIISIVGMGGIGKTTLAQLACNHVEVKREFDKTLWVCVSETFDEFRIAKAMLEALTGSTSNLNALQSLLISIDESIAGK 256 (938)
Q Consensus 177 ~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~ 256 (938)
...+.|+|..|+|||.|++.+++.. ...-..++|++..+ +... .. .+.+.+.+-
T Consensus 45 ~~~l~l~G~~G~GKTHLl~a~~~~~--~~~~~~v~y~~~~~------~~~~--------------~~----~~~~~~~~~ 98 (234)
T PRK05642 45 ESLIYLWGKDGVGRSHLLQAACLRF--EQRGEPAVYLPLAE------LLDR--------------GP----ELLDNLEQY 98 (234)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHH--HhCCCcEEEeeHHH------HHhh--------------hH----HHHHhhhhC
Confidence 3678999999999999999998843 22223566776432 1111 01 122222222
Q ss_pred eEEEEEecCCCCC-ccChhH-HHHhhhCC-CCCcEEEEEcCChh---------hhhhhcCCceEeCCCCChHHHHHHHHH
Q 002308 257 RFLLVLDDVWDGD-YIKWEP-FYRCLKKG-LHGSKILITTRKES---------IVSMMRSTDIISIEELAEEECWVLFKR 324 (938)
Q Consensus 257 ~~LlVlDdv~~~~-~~~~~~-l~~~l~~~-~~gs~ilvTtr~~~---------v~~~~~~~~~~~l~~L~~~~~~~lf~~ 324 (938)
. +||+||+.... ...|.. +...+... ..|..||+|++... +...+.....+++.+++.++..+++..
T Consensus 99 d-~LiiDDi~~~~~~~~~~~~Lf~l~n~~~~~g~~ilits~~~p~~l~~~~~~L~SRl~~gl~~~l~~~~~e~~~~il~~ 177 (234)
T PRK05642 99 E-LVCLDDLDVIAGKADWEEALFHLFNRLRDSGRRLLLAASKSPRELPIKLPDLKSRLTLALVFQMRGLSDEDKLRALQL 177 (234)
T ss_pred C-EEEEechhhhcCChHHHHHHHHHHHHHHhcCCEEEEeCCCCHHHcCccCccHHHHHhcCeeeecCCCCHHHHHHHHHH
Confidence 2 67899996432 234543 44444332 34667899887532 222233346789999999999999997
Q ss_pred hhcCCCCCchhhHHHHHHHHHHHhcCCChhHHHHHHhhh
Q 002308 325 LAFFGRSTEECEKLEQIGQRIARKCKGLPLAAKTMGSLM 363 (938)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~~~~~l 363 (938)
++...+- ..+ +++..-|++.+.|..-.+..+-..|
T Consensus 178 ka~~~~~-~l~---~ev~~~L~~~~~~d~r~l~~~l~~l 212 (234)
T PRK05642 178 RASRRGL-HLT---DEVGHFILTRGTRSMSALFDLLERL 212 (234)
T ss_pred HHHHcCC-CCC---HHHHHHHHHhcCCCHHHHHHHHHHH
Confidence 6643221 111 3557788888888766655444433
No 107
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.27 E-value=2.3e-08 Score=97.94 Aligned_cols=81 Identities=20% Similarity=0.274 Sum_probs=46.6
Q ss_pred CeeEEecCCCCCCcc-cCccccccCCCCeeeecCCccc-cccccccCCCCccEEEcCCCCCccccc--ccccccCcccee
Q 002308 569 SLRALDFPSFYLPLE-IPRNIEKLVHLRYLNLSDQKIK-KLPETLCELYNLEKLDISGCSDLRELP--KGIGKLINMKHL 644 (938)
Q Consensus 569 ~Lr~L~L~~n~~~~~-lp~~~~~l~~L~~L~L~~~~i~-~lp~~i~~l~~L~~L~l~~~~~l~~lp--~~i~~l~~L~~L 644 (938)
.|+.|||++..+... +...+..|.+|+.|+|.|+.+. .+...|.+-.+|+.|+++.|..+.+.. --+.+++.|..|
T Consensus 186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~L 265 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDEL 265 (419)
T ss_pred hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhc
Confidence 477777777764322 3334556677777777777665 444556666667777777665443211 123445555555
Q ss_pred ecCCC
Q 002308 645 LNSGT 649 (938)
Q Consensus 645 ~l~~~ 649 (938)
+++.|
T Consensus 266 NlsWc 270 (419)
T KOG2120|consen 266 NLSWC 270 (419)
T ss_pred CchHh
Confidence 55555
No 108
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=98.24 E-value=2.6e-05 Score=89.35 Aligned_cols=198 Identities=12% Similarity=0.139 Sum_probs=114.8
Q ss_pred CCceecchhhHHHHHHHHhccCcccCCCeEEEEEEccCCChHHHHHHHHhhhhhhhcccC--eEEEEEeCCCCCHHHHHH
Q 002308 149 EEEICGRVGERNALLSMLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNHVEVKREFD--KTLWVCVSETFDEFRIAK 226 (938)
Q Consensus 149 ~~~~vGr~~~~~~l~~~l~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~--~~~wv~~~~~~~~~~~~~ 226 (938)
-..++|.+..++.+..++.... -..-+.++|+.|+||||+|+.+++......... ...+-.+. .-.-.+
T Consensus 23 f~dliGq~~~v~~L~~~~~~gr-----i~ha~L~~Gp~GvGKTt~Ar~lAk~L~c~~~~~~~~~~~~~cg----~c~~C~ 93 (598)
T PRK09111 23 FDDLIGQEAMVRTLTNAFETGR-----IAQAFMLTGVRGVGKTTTARILARALNYEGPDGDGGPTIDLCG----VGEHCQ 93 (598)
T ss_pred HHHhcCcHHHHHHHHHHHHcCC-----CCceEEEECCCCCCHHHHHHHHHHhhCcCCccccCCCccccCc----ccHHHH
Confidence 3578999999999999987532 456788999999999999999988421111100 00000000 001111
Q ss_pred HHHHHhcC-----CCCCCCcHHHHHHHHHHH----hcCceEEEEEecCCCCCccChhHHHHhhhCCCCCcEEEEEc-CCh
Q 002308 227 AMLEALTG-----STSNLNALQSLLISIDES----IAGKRFLLVLDDVWDGDYIKWEPFYRCLKKGLHGSKILITT-RKE 296 (938)
Q Consensus 227 ~i~~~l~~-----~~~~~~~~~~~~~~l~~~----l~~~~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTt-r~~ 296 (938)
.|...-.. .......++++...+... ..+++-++|+|+++.......+.+...+..-..++.+|++| ...
T Consensus 94 ~i~~g~h~Dv~e~~a~s~~gvd~IReIie~~~~~P~~a~~KVvIIDEad~Ls~~a~naLLKtLEePp~~~~fIl~tte~~ 173 (598)
T PRK09111 94 AIMEGRHVDVLEMDAASHTGVDDIREIIESVRYRPVSARYKVYIIDEVHMLSTAAFNALLKTLEEPPPHVKFIFATTEIR 173 (598)
T ss_pred HHhcCCCCceEEecccccCCHHHHHHHHHHHHhchhcCCcEEEEEEChHhCCHHHHHHHHHHHHhCCCCeEEEEEeCChh
Confidence 11111000 000112223322222111 12445579999997766556777877777655666666554 433
Q ss_pred hhhhhh-cCCceEeCCCCChHHHHHHHHHhhcCCCCCchhhHHHHHHHHHHHhcCCChhHHHHH
Q 002308 297 SIVSMM-RSTDIISIEELAEEECWVLFKRLAFFGRSTEECEKLEQIGQRIARKCKGLPLAAKTM 359 (938)
Q Consensus 297 ~v~~~~-~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~~ 359 (938)
.+...+ .....+++.+++.++....+.+.+........ .+....|++.++|.+.-+...
T Consensus 174 kll~tI~SRcq~~~f~~l~~~el~~~L~~i~~kegi~i~----~eAl~lIa~~a~Gdlr~al~~ 233 (598)
T PRK09111 174 KVPVTVLSRCQRFDLRRIEADVLAAHLSRIAAKEGVEVE----DEALALIARAAEGSVRDGLSL 233 (598)
T ss_pred hhhHHHHhheeEEEecCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCCHHHHHHH
Confidence 333332 34578999999999999998887643332222 234678899999988655443
No 109
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=98.24 E-value=5.3e-05 Score=75.95 Aligned_cols=185 Identities=13% Similarity=0.189 Sum_probs=101.4
Q ss_pred eecch-hhHHHHHHHHhccCcccCCCeEEEEEEccCCChHHHHHHHHhhhhhhhcccCeEEEEEeCCCCCHHHHHHHHHH
Q 002308 152 ICGRV-GERNALLSMLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNHVEVKREFDKTLWVCVSETFDEFRIAKAMLE 230 (938)
Q Consensus 152 ~vGr~-~~~~~l~~~l~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~ 230 (938)
++|.. +..-.....+.... +.....+.|+|..|+|||.|.+++++.......=..++|++ ..+....+..
T Consensus 11 v~g~~N~~a~~~~~~ia~~~---~~~~~~l~l~G~~G~GKTHLL~Ai~~~~~~~~~~~~v~y~~------~~~f~~~~~~ 81 (219)
T PF00308_consen 11 VVGESNELAYAAAKAIAENP---GERYNPLFLYGPSGLGKTHLLQAIANEAQKQHPGKRVVYLS------AEEFIREFAD 81 (219)
T ss_dssp --TTTTHHHHHHHHHHHHST---TTSSSEEEEEESTTSSHHHHHHHHHHHHHHHCTTS-EEEEE------HHHHHHHHHH
T ss_pred CcCCcHHHHHHHHHHHHhcC---CCCCCceEEECCCCCCHHHHHHHHHHHHHhccccccceeec------HHHHHHHHHH
Confidence 35642 23334444444433 22345689999999999999999999532221112466665 3455555655
Q ss_pred HhcCCCCCCCcHHHHHHHHHHHhcCceEEEEEecCCCCCc-cChhH-HHHhhhCC-CCCcEEEEEcCCh---------hh
Q 002308 231 ALTGSTSNLNALQSLLISIDESIAGKRFLLVLDDVWDGDY-IKWEP-FYRCLKKG-LHGSKILITTRKE---------SI 298 (938)
Q Consensus 231 ~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~~-~~~~~-l~~~l~~~-~~gs~ilvTtr~~---------~v 298 (938)
.+.. .... .+...+++- =+|++||++.... ..|.. +...+... ..|.+||+|++.. ++
T Consensus 82 ~~~~-----~~~~----~~~~~~~~~-DlL~iDDi~~l~~~~~~q~~lf~l~n~~~~~~k~li~ts~~~P~~l~~~~~~L 151 (219)
T PF00308_consen 82 ALRD-----GEIE----EFKDRLRSA-DLLIIDDIQFLAGKQRTQEELFHLFNRLIESGKQLILTSDRPPSELSGLLPDL 151 (219)
T ss_dssp HHHT-----TSHH----HHHHHHCTS-SEEEEETGGGGTTHHHHHHHHHHHHHHHHHTTSEEEEEESS-TTTTTTS-HHH
T ss_pred HHHc-----ccch----hhhhhhhcC-CEEEEecchhhcCchHHHHHHHHHHHHHHhhCCeEEEEeCCCCccccccChhh
Confidence 5543 1122 233444433 3788999976432 22333 33333321 3567899999653 22
Q ss_pred hhhhcCCceEeCCCCChHHHHHHHHHhhcCCCCCchhhHHHHHHHHHHHhcCCChhHHHHH
Q 002308 299 VSMMRSTDIISIEELAEEECWVLFKRLAFFGRSTEECEKLEQIGQRIARKCKGLPLAAKTM 359 (938)
Q Consensus 299 ~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~~ 359 (938)
...+...-.+++.+.+.++..+++.+++...+.. --+++++-|++.+.+..-.+..+
T Consensus 152 ~SRl~~Gl~~~l~~pd~~~r~~il~~~a~~~~~~----l~~~v~~~l~~~~~~~~r~L~~~ 208 (219)
T PF00308_consen 152 RSRLSWGLVVELQPPDDEDRRRILQKKAKERGIE----LPEEVIEYLARRFRRDVRELEGA 208 (219)
T ss_dssp HHHHHCSEEEEE----HHHHHHHHHHHHHHTT------S-HHHHHHHHHHTTSSHHHHHHH
T ss_pred hhhHhhcchhhcCCCCHHHHHHHHHHHHHHhCCC----CcHHHHHHHHHhhcCCHHHHHHH
Confidence 2334556689999999999999999987543332 22345667777776655555443
No 110
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.23 E-value=4.6e-05 Score=86.81 Aligned_cols=197 Identities=14% Similarity=0.134 Sum_probs=114.0
Q ss_pred CceecchhhHHHHHHHHhccCcccCCCeEEEEEEccCCChHHHHHHHHhhhhhhhcccCeEEEEEeCCCCCHHHHHHHHH
Q 002308 150 EEICGRVGERNALLSMLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNHVEVKREFDKTLWVCVSETFDEFRIAKAML 229 (938)
Q Consensus 150 ~~~vGr~~~~~~l~~~l~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 229 (938)
.+++|.+..++.+..++... .-.+.+.++|+.|+||||+|+.+++...-....+ + .+++.-.....|.
T Consensus 13 ~eivGq~~i~~~L~~~i~~~-----r~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~---~----~pCg~C~~C~~i~ 80 (584)
T PRK14952 13 AEVVGQEHVTEPLSSALDAG-----RINHAYLFSGPRGCGKTSSARILARSLNCAQGPT---A----TPCGVCESCVALA 80 (584)
T ss_pred HHhcCcHHHHHHHHHHHHcC-----CCCeEEEEECCCCCCHHHHHHHHHHHhccccCCC---C----CcccccHHHHHhh
Confidence 57899999999999998753 2456678999999999999999987421101000 0 0000001111111
Q ss_pred HH---------hcC-CCCCCCcHHHHHHHHHHH-hcCceEEEEEecCCCCCccChhHHHHhhhCCCCCcEEEEEc-CChh
Q 002308 230 EA---------LTG-STSNLNALQSLLISIDES-IAGKRFLLVLDDVWDGDYIKWEPFYRCLKKGLHGSKILITT-RKES 297 (938)
Q Consensus 230 ~~---------l~~-~~~~~~~~~~~~~~l~~~-l~~~~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTt-r~~~ 297 (938)
.. +.. ......+..++...+... ..+++-++|+|+++.......+.++..+..-.....+|++| ....
T Consensus 81 ~~~~~~~dvieidaas~~gvd~iRel~~~~~~~P~~~~~KVvIIDEah~Lt~~A~NALLK~LEEpp~~~~fIL~tte~~k 160 (584)
T PRK14952 81 PNGPGSIDVVELDAASHGGVDDTRELRDRAFYAPAQSRYRIFIVDEAHMVTTAGFNALLKIVEEPPEHLIFIFATTEPEK 160 (584)
T ss_pred cccCCCceEEEeccccccCHHHHHHHHHHHHhhhhcCCceEEEEECCCcCCHHHHHHHHHHHhcCCCCeEEEEEeCChHh
Confidence 00 000 000111122222222111 12455689999998877677788888887755566555544 4444
Q ss_pred hhhh-hcCCceEeCCCCChHHHHHHHHHhhcCCCCCchhhHHHHHHHHHHHhcCCChh-HHHHHHhh
Q 002308 298 IVSM-MRSTDIISIEELAEEECWVLFKRLAFFGRSTEECEKLEQIGQRIARKCKGLPL-AAKTMGSL 362 (938)
Q Consensus 298 v~~~-~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl-ai~~~~~~ 362 (938)
+... ......+++.+++.++..+.+...+...+.... .+....|++.++|.+- ++..+-.+
T Consensus 161 ll~TI~SRc~~~~F~~l~~~~i~~~L~~i~~~egi~i~----~~al~~Ia~~s~GdlR~aln~Ldql 223 (584)
T PRK14952 161 VLPTIRSRTHHYPFRLLPPRTMRALIARICEQEGVVVD----DAVYPLVIRAGGGSPRDTLSVLDQL 223 (584)
T ss_pred hHHHHHHhceEEEeeCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 4433 344678999999999998888876643332221 2335678889999774 44444333
No 111
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=98.23 E-value=4.4e-05 Score=87.85 Aligned_cols=189 Identities=16% Similarity=0.200 Sum_probs=109.3
Q ss_pred CceecchhhHHHHHHHHhccCcccCCCeEEEEEEccCCChHHHHHHHHhhhhhhhcccCeEEEEEeC-------CCCCHH
Q 002308 150 EEICGRVGERNALLSMLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNHVEVKREFDKTLWVCVS-------ETFDEF 222 (938)
Q Consensus 150 ~~~vGr~~~~~~l~~~l~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~-------~~~~~~ 222 (938)
..++|.+..++.+..++... .-.+.+.++|+.|+||||+|+.++...--....+ .+-.+. ...++.
T Consensus 18 ~dIiGQe~~v~~L~~aI~~~-----rl~HAYLF~GP~GtGKTt~AriLAk~LnC~~~~~--~~~pC~~C~~~~~~~~Dvi 90 (725)
T PRK07133 18 DDIVGQDHIVQTLKNIIKSN-----KISHAYLFSGPRGTGKTSVAKIFANALNCSHKTD--LLEPCQECIENVNNSLDII 90 (725)
T ss_pred HHhcCcHHHHHHHHHHHHcC-----CCCeEEEEECCCCCcHHHHHHHHHHHhcccccCC--CCCchhHHHHhhcCCCcEE
Confidence 56899999999999999753 2456678999999999999999987421100000 000000 000000
Q ss_pred HHHHHHHHHhcCC-CCCCCcHHHHHHHHHHH-hcCceEEEEEecCCCCCccChhHHHHhhhCCCCCcEEE-EEcCChhhh
Q 002308 223 RIAKAMLEALTGS-TSNLNALQSLLISIDES-IAGKRFLLVLDDVWDGDYIKWEPFYRCLKKGLHGSKIL-ITTRKESIV 299 (938)
Q Consensus 223 ~~~~~i~~~l~~~-~~~~~~~~~~~~~l~~~-l~~~~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~il-vTtr~~~v~ 299 (938)
.+... .....++++++..+... ..+++-++|+|++.......+..+...+........+| +|++...+.
T Consensus 91 --------eidaasn~~vd~IReLie~~~~~P~~g~~KV~IIDEa~~LT~~A~NALLKtLEEPP~~tifILaTte~~KLl 162 (725)
T PRK07133 91 --------EMDAASNNGVDEIRELIENVKNLPTQSKYKIYIIDEVHMLSKSAFNALLKTLEEPPKHVIFILATTEVHKIP 162 (725)
T ss_pred --------EEeccccCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhCCHHHHHHHHHHhhcCCCceEEEEEcCChhhhh
Confidence 00000 00011122222222211 22566699999998766666777877776654455545 454444444
Q ss_pred hh-hcCCceEeCCCCChHHHHHHHHHhhcCCCCCchhhHHHHHHHHHHHhcCCChhHHH
Q 002308 300 SM-MRSTDIISIEELAEEECWVLFKRLAFFGRSTEECEKLEQIGQRIARKCKGLPLAAK 357 (938)
Q Consensus 300 ~~-~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~ 357 (938)
.. ......+++.+++.++..+.+...+...+.... .+.++.|++.++|.+.-+.
T Consensus 163 ~TI~SRcq~ieF~~L~~eeI~~~L~~il~kegI~id----~eAl~~LA~lS~GslR~Al 217 (725)
T PRK07133 163 LTILSRVQRFNFRRISEDEIVSRLEFILEKENISYE----KNALKLIAKLSSGSLRDAL 217 (725)
T ss_pred HHHHhhceeEEccCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCCHHHHH
Confidence 33 344578999999999999888876543222111 2236788999988765443
No 112
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=98.21 E-value=4.1e-06 Score=88.20 Aligned_cols=101 Identities=18% Similarity=0.151 Sum_probs=66.5
Q ss_pred HHHHHHhccCcccCCCeEEEEEEccCCChHHHHHHHHhhhhhhhcccCeEEEEEeCCCC--CHHHHHHHHHHHhcCCCCC
Q 002308 161 ALLSMLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNHVEVKREFDKTLWVCVSETF--DEFRIAKAMLEALTGSTSN 238 (938)
Q Consensus 161 ~l~~~l~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~--~~~~~~~~i~~~l~~~~~~ 238 (938)
++++.+..- ......+|+|++|+||||||+++++..... +|+..+||.+.+.. .+.++++.+...+-....+
T Consensus 158 rvID~l~PI-----GkGQR~lIvgppGvGKTTLaK~Ian~I~~n-hFDv~~~VvLIgER~~EVtdiqrsIlg~vv~st~d 231 (416)
T PRK09376 158 RIIDLIAPI-----GKGQRGLIVAPPKAGKTVLLQNIANSITTN-HPEVHLIVLLIDERPEEVTDMQRSVKGEVVASTFD 231 (416)
T ss_pred eeeeeeccc-----ccCceEEEeCCCCCChhHHHHHHHHHHHhh-cCCeEEEEEEeCCchhHHHHHHHHhcCcEEEECCC
Confidence 455555532 244678999999999999999999975444 89999999998887 7777888776332222222
Q ss_pred CCcHHHHH-----HHHHHH--hcCceEEEEEecCCC
Q 002308 239 LNALQSLL-----ISIDES--IAGKRFLLVLDDVWD 267 (938)
Q Consensus 239 ~~~~~~~~-----~~l~~~--l~~~~~LlVlDdv~~ 267 (938)
........ -...+. -.+++++|++|++..
T Consensus 232 ~~~~~~~~~a~~~ie~Ae~~~e~G~dVlL~iDsItR 267 (416)
T PRK09376 232 EPAERHVQVAEMVIEKAKRLVEHGKDVVILLDSITR 267 (416)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHcCCCEEEEEEChHH
Confidence 21111111 111112 357999999999954
No 113
>COG3903 Predicted ATPase [General function prediction only]
Probab=98.21 E-value=2.4e-06 Score=89.26 Aligned_cols=235 Identities=23% Similarity=0.225 Sum_probs=153.1
Q ss_pred CeEEEEEEccCCChHHHHHHHHhhhhhhhccc-CeEEEEEeCCCCCHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHhc
Q 002308 176 GLHIISIVGMGGIGKTTLAQLACNHVEVKREF-DKTLWVCVSETFDEFRIAKAMLEALTGSTSNLNALQSLLISIDESIA 254 (938)
Q Consensus 176 ~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f-~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~ 254 (938)
..+.+.++|.|||||||++-.+.. ....| +.+.++....-.+...+.-.+...++....+ .+.....+.....
T Consensus 13 ~~RlvtL~g~ggvgkttl~~~~a~---~~~~~~~~v~~vdl~pitD~~~v~~~~ag~~gl~~~~---g~~~~~~~~~~~~ 86 (414)
T COG3903 13 ALRLVTLTGAGGVGKTTLALQAAH---AASEYADGVAFVDLAPITDPALVFPTLAGALGLHVQP---GDSAVDTLVRRIG 86 (414)
T ss_pred hhheeeeeccCccceehhhhhhHh---HhhhcccceeeeeccccCchhHhHHHHHhhccccccc---chHHHHHHHHHHh
Confidence 567899999999999999999987 56677 4566666666666666666666666644322 2223334555667
Q ss_pred CceEEEEEecCCCCCccChhHHHHhhhCCCCCcEEEEEcCChhhhhhhcCCceEeCCCCChH-HHHHHHHHhhcCCCCC-
Q 002308 255 GKRFLLVLDDVWDGDYIKWEPFYRCLKKGLHGSKILITTRKESIVSMMRSTDIISIEELAEE-ECWVLFKRLAFFGRST- 332 (938)
Q Consensus 255 ~~~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtr~~~v~~~~~~~~~~~l~~L~~~-~~~~lf~~~~~~~~~~- 332 (938)
++|.++|+||....- ..-..+...+..+.+.-.|+.|+|..... .......+.+|+.. ++.++|...+......
T Consensus 87 ~rr~llvldncehl~-~~~a~~i~all~~~~~~~~~atsre~~l~---~ge~~~~~~~L~~~d~a~~lf~~ra~~~~~~f 162 (414)
T COG3903 87 DRRALLVLDNCEHLL-DACAALIVALLGACPRLAILATSREAILV---AGEVHRRVPSLSLFDEAIELFVCRAVLVALSF 162 (414)
T ss_pred hhhHHHHhcCcHHHH-HHHHHHHHHHHccchhhhhHHHhHhhhcc---cccccccCCccccCCchhHHHHHHHHHhccce
Confidence 899999999985421 12233444555556666789999875332 34556777777754 7888888775432221
Q ss_pred chhhHHHHHHHHHHHhcCCChhHHHHHHhhhcCCCCHHHHHHHHhcccccccc-------ccccchhhHHhhhccCChhH
Q 002308 333 EECEKLEQIGQRIARKCKGLPLAAKTMGSLMSSKKTEEEWKRILNSDLWKVEE-------IEKGVLTPLWLSYNDLPSRV 405 (938)
Q Consensus 333 ~~~~~~~~~~~~i~~~~~g~Plai~~~~~~l~~~~~~~~w~~~~~~~~~~~~~-------~~~~~~~~l~~sy~~L~~~~ 405 (938)
.....-.....+|.++.+|.|++|..+++..+.- ...+-...+......+.+ ........+.+||.-|....
T Consensus 163 ~l~~~~~a~v~~icr~ldg~~laielaaarv~sl-~~~~i~~~L~drf~ll~~~~r~a~~~~qtl~asl~ws~~lLtgwe 241 (414)
T COG3903 163 WLTDDNAAAVAEICRRLDGIPLAIELAAARVRSL-SPDEIAAGLRDRFRLLTGGARLAVLRQQTLRASLDWSYALLTGWE 241 (414)
T ss_pred eecCCchHHHHHHHHHhhcchHHHHHHHHHHHhc-CHHHHHHHHhhHHHHHhcccccchhHHHhccchhhhhhHhhhhHH
Confidence 1122333457799999999999999999887643 233222222221111111 12346778999999999988
Q ss_pred HHHHhHhccCCCCccc
Q 002308 406 KRCFSYCAVFPKDYNI 421 (938)
Q Consensus 406 k~~f~~~~~fp~~~~i 421 (938)
+-.|.-++.|...+..
T Consensus 242 ~~~~~rLa~~~g~f~~ 257 (414)
T COG3903 242 RALFGRLAVFVGGFDL 257 (414)
T ss_pred HHHhcchhhhhhhhcc
Confidence 8888888888665543
No 114
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=98.20 E-value=9.2e-05 Score=73.19 Aligned_cols=268 Identities=19% Similarity=0.201 Sum_probs=140.9
Q ss_pred CceecchhhHHHHHHHHhccCcccCCCeEEEEEEccCCChHHHHHHHHhhhhhhhcccCeEEEEEeCCCCCHHHHHHHHH
Q 002308 150 EEICGRVGERNALLSMLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNHVEVKREFDKTLWVCVSETFDEFRIAKAML 229 (938)
Q Consensus 150 ~~~vGr~~~~~~l~~~l~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 229 (938)
.+|+|.++..+++.-.+...... +...-.|.++|++|.||||||.-+++. ....+. +..+....-..-+..|+
T Consensus 26 ~efiGQ~~vk~~L~ifI~AAk~r-~e~lDHvLl~GPPGlGKTTLA~IIA~E--mgvn~k----~tsGp~leK~gDlaaiL 98 (332)
T COG2255 26 DEFIGQEKVKEQLQIFIKAAKKR-GEALDHVLLFGPPGLGKTTLAHIIANE--LGVNLK----ITSGPALEKPGDLAAIL 98 (332)
T ss_pred HHhcChHHHHHHHHHHHHHHHhc-CCCcCeEEeeCCCCCcHHHHHHHHHHH--hcCCeE----ecccccccChhhHHHHH
Confidence 57999999888887777654432 456778999999999999999999983 433321 11111111111122222
Q ss_pred HHhcCCCCCCCcHHHHHHHHHHHhcCceEEEEEecCCCCCccChhHHHHhhhCC--------CCCcEE-----------E
Q 002308 230 EALTGSTSNLNALQSLLISIDESIAGKRFLLVLDDVWDGDYIKWEPFYRCLKKG--------LHGSKI-----------L 290 (938)
Q Consensus 230 ~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~~~~~~~l~~~l~~~--------~~gs~i-----------l 290 (938)
..+ + +.=++++|.++......-+.+..+..+. ++++|. =
T Consensus 99 t~L---------------------e-~~DVLFIDEIHrl~~~vEE~LYpaMEDf~lDI~IG~gp~Arsv~ldLppFTLIG 156 (332)
T COG2255 99 TNL---------------------E-EGDVLFIDEIHRLSPAVEEVLYPAMEDFRLDIIIGKGPAARSIRLDLPPFTLIG 156 (332)
T ss_pred hcC---------------------C-cCCeEEEehhhhcChhHHHHhhhhhhheeEEEEEccCCccceEeccCCCeeEee
Confidence 222 2 2234556776654433333344433321 233332 2
Q ss_pred EEcCChhhhhhhcC--CceEeCCCCChHHHHHHHHHhhcCCCCCchhhHHHHHHHHHHHhcCCChhHHHHHHhhhcCCCC
Q 002308 291 ITTRKESIVSMMRS--TDIISIEELAEEECWVLFKRLAFFGRSTEECEKLEQIGQRIARKCKGLPLAAKTMGSLMSSKKT 368 (938)
Q Consensus 291 vTtr~~~v~~~~~~--~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~~~~~l~~~~~ 368 (938)
-|||.-.+...... .-+.++..-+.+|-.++..+.+..-..... ++-+.+|+++..|-|.-..-+-+..+
T Consensus 157 ATTr~G~lt~PLrdRFGi~~rlefY~~~eL~~Iv~r~a~~l~i~i~----~~~a~eIA~rSRGTPRIAnRLLrRVR---- 228 (332)
T COG2255 157 ATTRAGMLTNPLRDRFGIIQRLEFYTVEELEEIVKRSAKILGIEID----EEAALEIARRSRGTPRIANRLLRRVR---- 228 (332)
T ss_pred eccccccccchhHHhcCCeeeeecCCHHHHHHHHHHHHHHhCCCCC----hHHHHHHHHhccCCcHHHHHHHHHHH----
Confidence 48886544433322 236778888999999999888743332222 23378999999999975444333222
Q ss_pred HHHHHHHHhccccccccccccchhhHHhhhccCChhHHHHHhHhccCCCCcccChHHHHHHHHHcCCCcchhccccchHH
Q 002308 369 EEEWKRILNSDLWKVEEIEKGVLTPLWLSYNDLPSRVKRCFSYCAVFPKDYNIKKDELITLWMAQGYLSAEAAEQDEEME 448 (938)
Q Consensus 369 ~~~w~~~~~~~~~~~~~~~~~~~~~l~~sy~~L~~~~k~~f~~~~~fp~~~~i~~~~li~~w~a~g~i~~~~~~~~~~~~ 448 (938)
++..+.....-. ....+.....+.+--..|+...+..+..+.-.+.+-++..+.+... -| .+..+.|
T Consensus 229 --Dfa~V~~~~~I~-~~ia~~aL~~L~Vd~~GLd~~D~k~L~~li~~f~GgPVGl~tia~~---lg-------e~~~TiE 295 (332)
T COG2255 229 --DFAQVKGDGDID-RDIADKALKMLDVDELGLDEIDRKYLRALIEQFGGGPVGLDTIAAA---LG-------EDRDTIE 295 (332)
T ss_pred --HHHHHhcCCccc-HHHHHHHHHHhCcccccccHHHHHHHHHHHHHhCCCCccHHHHHHH---hc-------CchhHHH
Confidence 233222210000 0011112333333334455555555555554444445555444311 11 2223444
Q ss_pred HHHHHHHHHHHhcccccccccC
Q 002308 449 TIGEEYFGILASRSFFQEFKKS 470 (938)
Q Consensus 449 ~~~~~~~~~L~~~~ll~~~~~~ 470 (938)
++-+ -.|+..+|++...++
T Consensus 296 dv~E---PyLiq~gfi~RTpRG 314 (332)
T COG2255 296 DVIE---PYLIQQGFIQRTPRG 314 (332)
T ss_pred HHHh---HHHHHhchhhhCCCc
Confidence 4433 347888999876543
No 115
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.20 E-value=1.1e-07 Score=92.10 Aligned_cols=152 Identities=20% Similarity=0.041 Sum_probs=88.9
Q ss_pred hccCCCcCCceEEEEecCCCCCCCCCccchHHHHhhCCCCCCCCeEEEeeecCCCCC-----CCchhccCCCCEEEEecC
Q 002308 717 ELDKKKYLSRLRLEFDKKGGGGGRRKNEDDQLLLEALQPPLNLKELEIHYYGGNTVF-----PSWMASLTNLKSLDLCFC 791 (938)
Q Consensus 717 ~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~-----p~~~~~l~~L~~L~L~~~ 791 (938)
.....+.|++.....|++... ........+....+|+.+.+..|.|...- -..+..+.+|+.|||.+|
T Consensus 152 Kaa~kp~Le~vicgrNRleng-------s~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDN 224 (388)
T COG5238 152 KAADKPKLEVVICGRNRLENG-------SKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDN 224 (388)
T ss_pred hhccCCCceEEEeccchhccC-------cHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeecccc
Confidence 345667899999998887541 12334445666679999999999886420 112236789999999999
Q ss_pred CCCCc----CCC-CCCCCccceeecccccCceEeCcccccCCCCCCCCCCCCcccccCCccceeeccccccccccccccc
Q 002308 792 ENCEQ----LPP-LGKLPSLEQLFISYMSSVKRVGDEFLGVESDRHDSSSSSSVIIAFPKLKSLSIFEMEELEEWDYGIT 866 (938)
Q Consensus 792 ~~~~~----l~~-l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~~~~~~~ 866 (938)
.++.. +.. +...+.|+.|.+..|-.-..-...++...+ ...+|+|..|.+.....=......
T Consensus 225 tft~~gS~~La~al~~W~~lrEL~lnDClls~~G~~~v~~~f~-----------e~~~p~l~~L~~~Yne~~~~~i~~-- 291 (388)
T COG5238 225 TFTLEGSRYLADALCEWNLLRELRLNDCLLSNEGVKSVLRRFN-----------EKFVPNLMPLPGDYNERRGGIILD-- 291 (388)
T ss_pred chhhhhHHHHHHHhcccchhhhccccchhhccccHHHHHHHhh-----------hhcCCCccccccchhhhcCceeee--
Confidence 76532 222 566778999999998622221222211100 124677777766543210000000
Q ss_pred ccccccc-ccccccceecccccc
Q 002308 867 RTGNTFI-NIMPRLSSLTINYCS 888 (938)
Q Consensus 867 ~~~~~~~-~~l~~L~~L~l~~c~ 888 (938)
...+.+. ..+|-|..|.+.+|.
T Consensus 292 ~~l~~~e~~~~p~L~~le~ngNr 314 (388)
T COG5238 292 ISLNEFEQDAVPLLVDLERNGNR 314 (388)
T ss_pred echhhhhhcccHHHHHHHHccCc
Confidence 0001111 278999999999864
No 116
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=98.18 E-value=6.5e-05 Score=83.82 Aligned_cols=171 Identities=19% Similarity=0.158 Sum_probs=103.8
Q ss_pred eEEEEEEccCCChHHHHHHHHhhhhhhhcccCeEEEEEeCCCCCHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHhcCc
Q 002308 177 LHIISIVGMGGIGKTTLAQLACNHVEVKREFDKTLWVCVSETFDEFRIAKAMLEALTGSTSNLNALQSLLISIDESIAGK 256 (938)
Q Consensus 177 ~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~ 256 (938)
...+.|+|..|+|||+|++++++.......-..++++++ .++...+...+.... .....+.+.++.
T Consensus 141 ~npl~i~G~~G~GKTHLl~Ai~~~l~~~~~~~~v~yv~~------~~f~~~~~~~l~~~~-------~~~~~~~~~~~~- 206 (450)
T PRK14087 141 YNPLFIYGESGMGKTHLLKAAKNYIESNFSDLKVSYMSG------DEFARKAVDILQKTH-------KEIEQFKNEICQ- 206 (450)
T ss_pred cCceEEECCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEH------HHHHHHHHHHHHHhh-------hHHHHHHHHhcc-
Confidence 456899999999999999999984221111123455543 456666666654211 112223333333
Q ss_pred eEEEEEecCCCCCc-cCh-hHHHHhhhCC-CCCcEEEEEcCCh---------hhhhhhcCCceEeCCCCChHHHHHHHHH
Q 002308 257 RFLLVLDDVWDGDY-IKW-EPFYRCLKKG-LHGSKILITTRKE---------SIVSMMRSTDIISIEELAEEECWVLFKR 324 (938)
Q Consensus 257 ~~LlVlDdv~~~~~-~~~-~~l~~~l~~~-~~gs~ilvTtr~~---------~v~~~~~~~~~~~l~~L~~~~~~~lf~~ 324 (938)
.-+||+||+..... ..+ +.+...+... ..|..||+|+... .+...+...-++.+.+++.++..+++.+
T Consensus 207 ~dvLiIDDiq~l~~k~~~~e~lf~l~N~~~~~~k~iIltsd~~P~~l~~l~~rL~SR~~~Gl~~~L~~pd~e~r~~iL~~ 286 (450)
T PRK14087 207 NDVLIIDDVQFLSYKEKTNEIFFTIFNNFIENDKQLFFSSDKSPELLNGFDNRLITRFNMGLSIAIQKLDNKTATAIIKK 286 (450)
T ss_pred CCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCcEEEECCCCHHHHhhccHHHHHHHhCCceeccCCcCHHHHHHHHHH
Confidence 34788999965431 122 3344444332 3455688887643 2222334456788999999999999999
Q ss_pred hhcCCCCCchhhHHHHHHHHHHHhcCCChhHHHHHHhhh
Q 002308 325 LAFFGRSTEECEKLEQIGQRIARKCKGLPLAAKTMGSLM 363 (938)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~~~~~l 363 (938)
++...+.. ..--+++...|++.+.|.|..+.-+...+
T Consensus 287 ~~~~~gl~--~~l~~evl~~Ia~~~~gd~R~L~gaL~~l 323 (450)
T PRK14087 287 EIKNQNIK--QEVTEEAINFISNYYSDDVRKIKGSVSRL 323 (450)
T ss_pred HHHhcCCC--CCCCHHHHHHHHHccCCCHHHHHHHHHHH
Confidence 87532210 01234567899999999998887666443
No 117
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.17 E-value=7.4e-05 Score=82.25 Aligned_cols=181 Identities=16% Similarity=0.228 Sum_probs=105.8
Q ss_pred CceecchhhHHHHHHHHhccCcccCCCeEEEEEEccCCChHHHHHHHHhhhhhhh------cccCeE-EEEEeCCCCCHH
Q 002308 150 EEICGRVGERNALLSMLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNHVEVK------REFDKT-LWVCVSETFDEF 222 (938)
Q Consensus 150 ~~~vGr~~~~~~l~~~l~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~v~~~~~~~------~~f~~~-~wv~~~~~~~~~ 222 (938)
..++|.+...+.+...+... .-.+.+.++|++|+||||+|..+.+...-. ..|... +-+......++.
T Consensus 17 ~~iig~~~~~~~l~~~i~~~-----~~~~~~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 91 (367)
T PRK14970 17 DDVVGQSHITNTLLNAIENN-----HLAQALLFCGPRGVGKTTCARILARKINQPGYDDPNEDFSFNIFELDAASNNSVD 91 (367)
T ss_pred HhcCCcHHHHHHHHHHHHcC-----CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCcceEEeccccCCCHH
Confidence 56899999999999998742 245688999999999999999997742110 112111 111111111111
Q ss_pred HHHHHHHHHhcCCCCCCCcHHHHHHHHHHHhcCceEEEEEecCCCCCccChhHHHHhhhCCCCCcEEEEEcC-Chhhhhh
Q 002308 223 RIAKAMLEALTGSTSNLNALQSLLISIDESIAGKRFLLVLDDVWDGDYIKWEPFYRCLKKGLHGSKILITTR-KESIVSM 301 (938)
Q Consensus 223 ~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtr-~~~v~~~ 301 (938)
. ..++++++... -..+++-++|+|++.......+..+...+......+.+|++|. ...+...
T Consensus 92 ~-i~~l~~~~~~~----------------p~~~~~kiviIDE~~~l~~~~~~~ll~~le~~~~~~~~Il~~~~~~kl~~~ 154 (367)
T PRK14970 92 D-IRNLIDQVRIP----------------PQTGKYKIYIIDEVHMLSSAAFNAFLKTLEEPPAHAIFILATTEKHKIIPT 154 (367)
T ss_pred H-HHHHHHHHhhc----------------cccCCcEEEEEeChhhcCHHHHHHHHHHHhCCCCceEEEEEeCCcccCCHH
Confidence 1 11222211100 0123455899999976544456666666655444555555553 3333222
Q ss_pred -hcCCceEeCCCCChHHHHHHHHHhhcCCCCCchhhHHHHHHHHHHHhcCCChhHH
Q 002308 302 -MRSTDIISIEELAEEECWVLFKRLAFFGRSTEECEKLEQIGQRIARKCKGLPLAA 356 (938)
Q Consensus 302 -~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai 356 (938)
......++..++++++....+...+...+..-. .+.++.+++.++|.+-.+
T Consensus 155 l~sr~~~v~~~~~~~~~l~~~l~~~~~~~g~~i~----~~al~~l~~~~~gdlr~~ 206 (367)
T PRK14970 155 ILSRCQIFDFKRITIKDIKEHLAGIAVKEGIKFE----DDALHIIAQKADGALRDA 206 (367)
T ss_pred HHhcceeEecCCccHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHhCCCCHHHH
Confidence 233457899999999999888887654332221 234678888888866544
No 118
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.16 E-value=5e-05 Score=86.10 Aligned_cols=198 Identities=12% Similarity=0.150 Sum_probs=112.9
Q ss_pred CceecchhhHHHHHHHHhccCcccCCCeEEEEEEccCCChHHHHHHHHhhhhhhhcccCeEEEEEeCCCCCHHHHHHHHH
Q 002308 150 EEICGRVGERNALLSMLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNHVEVKREFDKTLWVCVSETFDEFRIAKAML 229 (938)
Q Consensus 150 ~~~vGr~~~~~~l~~~l~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 229 (938)
.+++|.+...+.+..++.... -...+.++|+.|+||||+|+.+++...-....+. ..++.-...+.|.
T Consensus 16 ~dIiGQe~v~~~L~~ai~~~r-----i~ha~Lf~GPpG~GKTtiArilAk~L~C~~~~~~-------~pCg~C~sC~~i~ 83 (624)
T PRK14959 16 AEVAGQETVKAILSRAAQENR-----VAPAYLFSGTRGVGKTTIARIFAKALNCETAPTG-------EPCNTCEQCRKVT 83 (624)
T ss_pred HHhcCCHHHHHHHHHHHHcCC-----CCceEEEECCCCCCHHHHHHHHHHhccccCCCCC-------CCCcccHHHHHHh
Confidence 468999888888888886422 3467889999999999999999885311100000 0011111111111
Q ss_pred HHhcC-----CCCCCCcHHHHH---HHHHH-HhcCceEEEEEecCCCCCccChhHHHHhhhCCCCCcEEEEEcCC-hhhh
Q 002308 230 EALTG-----STSNLNALQSLL---ISIDE-SIAGKRFLLVLDDVWDGDYIKWEPFYRCLKKGLHGSKILITTRK-ESIV 299 (938)
Q Consensus 230 ~~l~~-----~~~~~~~~~~~~---~~l~~-~l~~~~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtr~-~~v~ 299 (938)
..-.. .......++++. ..+.. -..+++-+||+|+++......+..+...+........+|++|.+ ..+.
T Consensus 84 ~g~hpDv~eId~a~~~~Id~iR~L~~~~~~~p~~g~~kVIIIDEad~Lt~~a~naLLk~LEEP~~~~ifILaTt~~~kll 163 (624)
T PRK14959 84 QGMHVDVVEIDGASNRGIDDAKRLKEAIGYAPMEGRYKVFIIDEAHMLTREAFNALLKTLEEPPARVTFVLATTEPHKFP 163 (624)
T ss_pred cCCCCceEEEecccccCHHHHHHHHHHHHhhhhcCCceEEEEEChHhCCHHHHHHHHHHhhccCCCEEEEEecCChhhhh
Confidence 10000 000011122221 11111 12356679999999877666677787777654445556655544 3333
Q ss_pred hh-hcCCceEeCCCCChHHHHHHHHHhhcCCCCCchhhHHHHHHHHHHHhcCCCh-hHHHHHHhhh
Q 002308 300 SM-MRSTDIISIEELAEEECWVLFKRLAFFGRSTEECEKLEQIGQRIARKCKGLP-LAAKTMGSLM 363 (938)
Q Consensus 300 ~~-~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~P-lai~~~~~~l 363 (938)
.. ......+++.+++.++....+...+........ .+.++.|++.++|.+ .|+..+...+
T Consensus 164 ~TI~SRcq~i~F~pLs~~eL~~~L~~il~~egi~id----~eal~lIA~~s~GdlR~Al~lLeqll 225 (624)
T PRK14959 164 VTIVSRCQHFTFTRLSEAGLEAHLTKVLGREGVDYD----PAAVRLIARRAAGSVRDSMSLLGQVL 225 (624)
T ss_pred HHHHhhhhccccCCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 22 233568899999999999888876643332111 234678888888865 5666665444
No 119
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=98.16 E-value=9e-05 Score=83.07 Aligned_cols=181 Identities=13% Similarity=0.142 Sum_probs=113.9
Q ss_pred CceecchhhHHHHHHHHhccCcccCCCeEEEEEEccCCChHHHHHHHHhhhhhhhc--c----------------c-CeE
Q 002308 150 EEICGRVGERNALLSMLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNHVEVKR--E----------------F-DKT 210 (938)
Q Consensus 150 ~~~vGr~~~~~~l~~~l~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~--~----------------f-~~~ 210 (938)
..++|.+...+.+...+... .-.+...++|+.|+||||+|+.+++..--.. . + ..+
T Consensus 14 deiiGqe~v~~~L~~~I~~g-----rl~hayLf~Gp~G~GKTt~Ar~LAk~L~c~~~~~~~pC~~C~~C~~~~~~~h~dv 88 (535)
T PRK08451 14 DELIGQESVSKTLSLALDNN-----RLAHAYLFSGLRGSGKTSSARIFARALVCEQGPSSTPCDTCIQCQSALENRHIDI 88 (535)
T ss_pred HHccCcHHHHHHHHHHHHcC-----CCCeeEEEECCCCCcHHHHHHHHHHHhcCCCCCCCCCCcccHHHHHHhhcCCCeE
Confidence 56899999999999988643 2456778999999999999998877421000 0 1 011
Q ss_pred EEEEeCCCCCHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHH----hcCceEEEEEecCCCCCccChhHHHHhhhCCCCC
Q 002308 211 LWVCVSETFDEFRIAKAMLEALTGSTSNLNALQSLLISIDES----IAGKRFLLVLDDVWDGDYIKWEPFYRCLKKGLHG 286 (938)
Q Consensus 211 ~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~----l~~~~~LlVlDdv~~~~~~~~~~l~~~l~~~~~g 286 (938)
+.+..+... ..+++...+... ..+++-++|+|+++.......+.++..+......
T Consensus 89 ~eldaas~~---------------------gId~IRelie~~~~~P~~~~~KVvIIDEad~Lt~~A~NALLK~LEEpp~~ 147 (535)
T PRK08451 89 IEMDAASNR---------------------GIDDIRELIEQTKYKPSMARFKIFIIDEVHMLTKEAFNALLKTLEEPPSY 147 (535)
T ss_pred EEecccccc---------------------CHHHHHHHHHHHhhCcccCCeEEEEEECcccCCHHHHHHHHHHHhhcCCc
Confidence 222211111 122322222211 1145568999999887766677788888765566
Q ss_pred cEEEEEcCCh-hhhhh-hcCCceEeCCCCChHHHHHHHHHhhcCCCCCchhhHHHHHHHHHHHhcCCChhHHHHHH
Q 002308 287 SKILITTRKE-SIVSM-MRSTDIISIEELAEEECWVLFKRLAFFGRSTEECEKLEQIGQRIARKCKGLPLAAKTMG 360 (938)
Q Consensus 287 s~ilvTtr~~-~v~~~-~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~~~ 360 (938)
+++|++|.+. .+... ......+++.+++.++..+.+...+...+.... .+.+..|++.++|.+.-+....
T Consensus 148 t~FIL~ttd~~kL~~tI~SRc~~~~F~~Ls~~ei~~~L~~Il~~EGi~i~----~~Al~~Ia~~s~GdlR~alnlL 219 (535)
T PRK08451 148 VKFILATTDPLKLPATILSRTQHFRFKQIPQNSIISHLKTILEKEGVSYE----PEALEILARSGNGSLRDTLTLL 219 (535)
T ss_pred eEEEEEECChhhCchHHHhhceeEEcCCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCcHHHHHHHH
Confidence 7766666553 22222 233578999999999999988876643332222 2346789999999886554443
No 120
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.16 E-value=4.7e-08 Score=95.85 Aligned_cols=138 Identities=20% Similarity=0.206 Sum_probs=83.1
Q ss_pred cccccccccCcceeecCcCCCCChhhhhhhhccCCCcCCceEEEEecCCCCCCCCCccchHHHHhhC-CCCCCCCeEEEe
Q 002308 687 LESLKNLEHLQVCCIRRLGDVSDVGEAKLLELDKKKYLSRLRLEFDKKGGGGGRRKNEDDQLLLEAL-QPPLNLKELEIH 765 (938)
Q Consensus 687 l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l-~~~~~L~~L~l~ 765 (938)
++.-.+|+.|+++.+..... .+....+.+|+.|..|+|+|+.... +.+.... .--++|..|+|+
T Consensus 230 iAkN~~L~~lnlsm~sG~t~-----n~~~ll~~scs~L~~LNlsWc~l~~----------~~Vtv~V~hise~l~~LNls 294 (419)
T KOG2120|consen 230 IAKNSNLVRLNLSMCSGFTE-----NALQLLLSSCSRLDELNLSWCFLFT----------EKVTVAVAHISETLTQLNLS 294 (419)
T ss_pred Hhccccceeeccccccccch-----hHHHHHHHhhhhHhhcCchHhhccc----------hhhhHHHhhhchhhhhhhhh
Confidence 44445555666555443221 2233356788889999999987764 1222222 123588889999
Q ss_pred eecCCCC---CCCchhccCCCCEEEEecCCCCCc--CCCCCCCCccceeecccccCceEeCcccccCCCCCCCCCCCCcc
Q 002308 766 YYGGNTV---FPSWMASLTNLKSLDLCFCENCEQ--LPPLGKLPSLEQLFISYMSSVKRVGDEFLGVESDRHDSSSSSSV 840 (938)
Q Consensus 766 ~~~~~~~---~p~~~~~l~~L~~L~L~~~~~~~~--l~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~l~~~~~~~~~~ 840 (938)
|+.-.-. +......+++|..|||++|..... ...+-+++.|++|.++.|..+ +|..+...
T Consensus 295 G~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSlsRCY~i--~p~~~~~l------------- 359 (419)
T KOG2120|consen 295 GYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLSRCYDI--IPETLLEL------------- 359 (419)
T ss_pred hhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeeehhhhcCC--ChHHeeee-------------
Confidence 8763321 222233789999999999865443 122778899999999998732 23333222
Q ss_pred cccCCccceeecccc
Q 002308 841 IIAFPKLKSLSIFEM 855 (938)
Q Consensus 841 ~~~~~~L~~L~l~~~ 855 (938)
...|+|.+|++.+|
T Consensus 360 -~s~psl~yLdv~g~ 373 (419)
T KOG2120|consen 360 -NSKPSLVYLDVFGC 373 (419)
T ss_pred -ccCcceEEEEeccc
Confidence 25667777766665
No 121
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.15 E-value=0.00011 Score=82.62 Aligned_cols=184 Identities=15% Similarity=0.162 Sum_probs=109.6
Q ss_pred CceecchhhHHHHHHHHhccCcccCCCeEEEEEEccCCChHHHHHHHHhhhhhh--h-----------------cccCeE
Q 002308 150 EEICGRVGERNALLSMLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNHVEV--K-----------------REFDKT 210 (938)
Q Consensus 150 ~~~vGr~~~~~~l~~~l~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~v~~~~~~--~-----------------~~f~~~ 210 (938)
..++|.+.....+..++.... -.+...++|+.|+||||+|+.++....- . +.|..+
T Consensus 16 ~diiGq~~i~~~L~~~i~~~~-----i~hayLf~Gp~G~GKTtlAr~lAk~L~c~~~~~~~pc~~c~nc~~i~~g~~~d~ 90 (486)
T PRK14953 16 KEVIGQEIVVRILKNAVKLQR-----VSHAYIFAGPRGTGKTTIARILAKVLNCLNPQEGEPCGKCENCVEIDKGSFPDL 90 (486)
T ss_pred HHccChHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHHhcCcCCCCCCCCCccHHHHHHhcCCCCcE
Confidence 468999999999999997532 3456778999999999999998874210 0 001112
Q ss_pred EEEEeCCCCCHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHH-HhcCceEEEEEecCCCCCccChhHHHHhhhCCCCCcEE
Q 002308 211 LWVCVSETFDEFRIAKAMLEALTGSTSNLNALQSLLISIDE-SIAGKRFLLVLDDVWDGDYIKWEPFYRCLKKGLHGSKI 289 (938)
Q Consensus 211 ~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~-~l~~~~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~i 289 (938)
+++..+....+ .+...+...+.. -..+++-++|+|+++.......+.+...+....+...+
T Consensus 91 ~eidaas~~gv------------------d~ir~I~~~~~~~P~~~~~KVvIIDEad~Lt~~a~naLLk~LEepp~~~v~ 152 (486)
T PRK14953 91 IEIDAASNRGI------------------DDIRALRDAVSYTPIKGKYKVYIIDEAHMLTKEAFNALLKTLEEPPPRTIF 152 (486)
T ss_pred EEEeCccCCCH------------------HHHHHHHHHHHhCcccCCeeEEEEEChhhcCHHHHHHHHHHHhcCCCCeEE
Confidence 22211111111 111122111111 11356679999999776555667777777665555555
Q ss_pred EEEc-CChhhhhh-hcCCceEeCCCCChHHHHHHHHHhhcCCCCCchhhHHHHHHHHHHHhcCCChhHHHHHH
Q 002308 290 LITT-RKESIVSM-MRSTDIISIEELAEEECWVLFKRLAFFGRSTEECEKLEQIGQRIARKCKGLPLAAKTMG 360 (938)
Q Consensus 290 lvTt-r~~~v~~~-~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~~~ 360 (938)
|++| +...+... ......+.+.+++.++....+...+...+.... .+.+..|++.++|.+..+....
T Consensus 153 Il~tt~~~kl~~tI~SRc~~i~f~~ls~~el~~~L~~i~k~egi~id----~~al~~La~~s~G~lr~al~~L 221 (486)
T PRK14953 153 ILCTTEYDKIPPTILSRCQRFIFSKPTKEQIKEYLKRICNEEKIEYE----EKALDLLAQASEGGMRDAASLL 221 (486)
T ss_pred EEEECCHHHHHHHHHHhceEEEcCCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCCHHHHHHHH
Confidence 5554 33333322 233568999999999998888876643332221 2336678888998776554443
No 122
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=98.14 E-value=3.3e-05 Score=84.64 Aligned_cols=180 Identities=16% Similarity=0.116 Sum_probs=99.8
Q ss_pred CCCceecchhhHHHHHHHHhccCcc-------cCCCeEEEEEEccCCChHHHHHHHHhhhhhhhcccCeEEEEEeCCCCC
Q 002308 148 DEEEICGRVGERNALLSMLLCESSE-------QQKGLHIISIVGMGGIGKTTLAQLACNHVEVKREFDKTLWVCVSETFD 220 (938)
Q Consensus 148 ~~~~~vGr~~~~~~l~~~l~~~~~~-------~~~~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~ 220 (938)
....+.|++...+++.+.+..+-.. +-...+-+.|+|++|+|||++|+++++. ....| +.+..
T Consensus 120 ~~~di~Gl~~~~~~l~~~i~~~~~~~~~~~~~g~~~p~gvLL~GppGtGKT~lakaia~~--l~~~~-----~~v~~--- 189 (364)
T TIGR01242 120 SYEDIGGLEEQIREIREAVELPLKHPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHE--TNATF-----IRVVG--- 189 (364)
T ss_pred CHHHhCChHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHh--CCCCE-----Eecch---
Confidence 3457899999999998877532110 0123456899999999999999999984 33333 22211
Q ss_pred HHHHHHHHHHHhcCCCCCCCcHHHHHHH-HHHHhcCceEEEEEecCCCCC-----------ccChhHHHHhh---hC--C
Q 002308 221 EFRIAKAMLEALTGSTSNLNALQSLLIS-IDESIAGKRFLLVLDDVWDGD-----------YIKWEPFYRCL---KK--G 283 (938)
Q Consensus 221 ~~~~~~~i~~~l~~~~~~~~~~~~~~~~-l~~~l~~~~~LlVlDdv~~~~-----------~~~~~~l~~~l---~~--~ 283 (938)
..+. ....+ ........ +...-...+.+|++|+++... ......+...+ .. .
T Consensus 190 -~~l~----~~~~g------~~~~~i~~~f~~a~~~~p~il~iDEiD~l~~~~~~~~~~~~~~~~~~l~~ll~~ld~~~~ 258 (364)
T TIGR01242 190 -SELV----RKYIG------EGARLVREIFELAKEKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAELDGFDP 258 (364)
T ss_pred -HHHH----HHhhh------HHHHHHHHHHHHHHhcCCcEEEhhhhhhhccccccCCCCccHHHHHHHHHHHHHhhCCCC
Confidence 1111 11100 01111111 222223467899999986421 11112222222 21 1
Q ss_pred CCCcEEEEEcCChhhhhh-h----cCCceEeCCCCChHHHHHHHHHhhcCCCCCchhhHHHHHHHHHHHhcCCCh
Q 002308 284 LHGSKILITTRKESIVSM-M----RSTDIISIEELAEEECWVLFKRLAFFGRSTEECEKLEQIGQRIARKCKGLP 353 (938)
Q Consensus 284 ~~gs~ilvTtr~~~v~~~-~----~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~P 353 (938)
..+.+||.||........ . .-...+.+...+.++..++|..++.+..... .-. ...+++.+.|..
T Consensus 259 ~~~v~vI~ttn~~~~ld~al~r~grfd~~i~v~~P~~~~r~~Il~~~~~~~~l~~-~~~----~~~la~~t~g~s 328 (364)
T TIGR01242 259 RGNVKVIAATNRPDILDPALLRPGRFDRIIEVPLPDFEGRLEILKIHTRKMKLAE-DVD----LEAIAKMTEGAS 328 (364)
T ss_pred CCCEEEEEecCChhhCChhhcCcccCceEEEeCCcCHHHHHHHHHHHHhcCCCCc-cCC----HHHHHHHcCCCC
Confidence 346678888876432211 1 1245789999999999999998875432211 112 346667776643
No 123
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.14 E-value=9.4e-05 Score=85.84 Aligned_cols=196 Identities=13% Similarity=0.134 Sum_probs=114.4
Q ss_pred CceecchhhHHHHHHHHhccCcccCCCeEEEEEEccCCChHHHHHHHHhhhhhhhcccCeEEEEEeCCCCCHHHHHHHHH
Q 002308 150 EEICGRVGERNALLSMLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNHVEVKREFDKTLWVCVSETFDEFRIAKAML 229 (938)
Q Consensus 150 ~~~vGr~~~~~~l~~~l~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 229 (938)
.+++|.+..++.+..++.... -.+.+.++|+.|+||||+|+.+++......... ....++.-...+.+.
T Consensus 16 ~eiiGq~~~~~~L~~~i~~~~-----i~~a~Lf~Gp~G~GKTtlA~~lA~~l~c~~~~~------~~~~c~~c~~c~~i~ 84 (585)
T PRK14950 16 AELVGQEHVVQTLRNAIAEGR-----VAHAYLFTGPRGVGKTSTARILAKAVNCTTNDP------KGRPCGTCEMCRAIA 84 (585)
T ss_pred HHhcCCHHHHHHHHHHHHhCC-----CceEEEEECCCCCCHHHHHHHHHHHhcCCCCCC------CCCCCccCHHHHHHh
Confidence 578999999999988887432 346678999999999999999987421100000 001111122223332
Q ss_pred HHhcCC-----CCCCCcHHHHHHHH---HHH-hcCceEEEEEecCCCCCccChhHHHHhhhCCCCCcEEEEEcCCh-hhh
Q 002308 230 EALTGS-----TSNLNALQSLLISI---DES-IAGKRFLLVLDDVWDGDYIKWEPFYRCLKKGLHGSKILITTRKE-SIV 299 (938)
Q Consensus 230 ~~l~~~-----~~~~~~~~~~~~~l---~~~-l~~~~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtr~~-~v~ 299 (938)
...... .......++....+ ... ..+++-++|+|+++.......+.+...+......+.+|++|.+. .+.
T Consensus 85 ~~~~~d~~~i~~~~~~~vd~ir~ii~~~~~~p~~~~~kVvIIDEa~~L~~~a~naLLk~LEepp~~tv~Il~t~~~~kll 164 (585)
T PRK14950 85 EGSAVDVIEMDAASHTSVDDAREIIERVQFRPALARYKVYIIDEVHMLSTAAFNALLKTLEEPPPHAIFILATTEVHKVP 164 (585)
T ss_pred cCCCCeEEEEeccccCCHHHHHHHHHHHhhCcccCCeEEEEEeChHhCCHHHHHHHHHHHhcCCCCeEEEEEeCChhhhh
Confidence 211110 00112222222211 110 12456689999997665555677777776655566666665443 333
Q ss_pred hh-hcCCceEeCCCCChHHHHHHHHHhhcCCCCCchhhHHHHHHHHHHHhcCCChhHHHHHH
Q 002308 300 SM-MRSTDIISIEELAEEECWVLFKRLAFFGRSTEECEKLEQIGQRIARKCKGLPLAAKTMG 360 (938)
Q Consensus 300 ~~-~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~~~ 360 (938)
.. ......+.+..++.++....+...+...+.... .+.+..|++.++|.+..+...-
T Consensus 165 ~tI~SR~~~i~f~~l~~~el~~~L~~~a~~egl~i~----~eal~~La~~s~Gdlr~al~~L 222 (585)
T PRK14950 165 ATILSRCQRFDFHRHSVADMAAHLRKIAAAEGINLE----PGALEAIARAATGSMRDAENLL 222 (585)
T ss_pred HHHHhccceeeCCCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCCHHHHHHHH
Confidence 22 233567889999999999888877643332211 2346789999999886554443
No 124
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=98.11 E-value=8e-05 Score=88.39 Aligned_cols=191 Identities=12% Similarity=0.094 Sum_probs=111.7
Q ss_pred CceecchhhHHHHHHHHhccCcccCCCeEEEEEEccCCChHHHHHHHHhhhhhhhcccCeEEEEEeCCCCCHHHHHHHHH
Q 002308 150 EEICGRVGERNALLSMLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNHVEVKREFDKTLWVCVSETFDEFRIAKAML 229 (938)
Q Consensus 150 ~~~vGr~~~~~~l~~~l~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 229 (938)
..+||.+..++.|..++.... -.+.+.++|+.|+||||+|+.+++...-...... ..+..-...+.|.
T Consensus 15 ~eiiGqe~v~~~L~~~i~~~r-----i~Ha~Lf~Gp~G~GKTt~A~~lAr~L~C~~~~~~-------~pCg~C~sC~~~~ 82 (824)
T PRK07764 15 AEVIGQEHVTEPLSTALDSGR-----INHAYLFSGPRGCGKTSSARILARSLNCVEGPTS-------TPCGECDSCVALA 82 (824)
T ss_pred HHhcCcHHHHHHHHHHHHhCC-----CCceEEEECCCCCCHHHHHHHHHHHhCcccCCCC-------CCCcccHHHHHHH
Confidence 468999999999999987532 3466889999999999999999885321111000 0000000011111
Q ss_pred HH-------hcCCCCCCCcHHHHHHHHHH----HhcCceEEEEEecCCCCCccChhHHHHhhhCCCCCcEEEEEcCC-hh
Q 002308 230 EA-------LTGSTSNLNALQSLLISIDE----SIAGKRFLLVLDDVWDGDYIKWEPFYRCLKKGLHGSKILITTRK-ES 297 (938)
Q Consensus 230 ~~-------l~~~~~~~~~~~~~~~~l~~----~l~~~~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtr~-~~ 297 (938)
.. +.........++++...... -..+++-++|||+++......++.|+..+..-...+.+|++|.+ ..
T Consensus 83 ~g~~~~~dv~eidaas~~~Vd~iR~l~~~~~~~p~~~~~KV~IIDEad~lt~~a~NaLLK~LEEpP~~~~fIl~tt~~~k 162 (824)
T PRK07764 83 PGGPGSLDVTEIDAASHGGVDDARELRERAFFAPAESRYKIFIIDEAHMVTPQGFNALLKIVEEPPEHLKFIFATTEPDK 162 (824)
T ss_pred cCCCCCCcEEEecccccCCHHHHHHHHHHHHhchhcCCceEEEEechhhcCHHHHHHHHHHHhCCCCCeEEEEEeCChhh
Confidence 00 00000001112222221111 12345558899999887777788888888876666666655543 33
Q ss_pred hhhh-hcCCceEeCCCCChHHHHHHHHHhhcCCCCCchhhHHHHHHHHHHHhcCCChhHH
Q 002308 298 IVSM-MRSTDIISIEELAEEECWVLFKRLAFFGRSTEECEKLEQIGQRIARKCKGLPLAA 356 (938)
Q Consensus 298 v~~~-~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai 356 (938)
+... ......|++..++.++..+.+.+.+........ .+....|++.++|.+..+
T Consensus 163 Ll~TIrSRc~~v~F~~l~~~~l~~~L~~il~~EGv~id----~eal~lLa~~sgGdlR~A 218 (824)
T PRK07764 163 VIGTIRSRTHHYPFRLVPPEVMRGYLERICAQEGVPVE----PGVLPLVIRAGGGSVRDS 218 (824)
T ss_pred hhHHHHhheeEEEeeCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCCHHHH
Confidence 4433 344678999999999998888876533222111 223567889999987443
No 125
>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]
Probab=98.11 E-value=0.00024 Score=73.35 Aligned_cols=168 Identities=17% Similarity=0.201 Sum_probs=105.8
Q ss_pred CCceecchhhHHHHHHHHhccCcccCCCeEEEEEEccCCChHHHHHHHHhhhhhhhcccCeEEEEEeCCCCCHHHHHHHH
Q 002308 149 EEEICGRVGERNALLSMLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNHVEVKREFDKTLWVCVSETFDEFRIAKAM 228 (938)
Q Consensus 149 ~~~~vGr~~~~~~l~~~l~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i 228 (938)
.+.|.+|+.+...+...+...+. .-+..|.|+|.+|.|||.+++.+.+.. . -..+|+++-+.++.+-++..|
T Consensus 5 ~~~v~~Re~qi~~L~~Llg~~~~---~~PS~~~iyG~sgTGKT~~~r~~l~~~--n---~~~vw~n~~ecft~~~lle~I 76 (438)
T KOG2543|consen 5 EPNVPCRESQIRRLKSLLGNNSC---TIPSIVHIYGHSGTGKTYLVRQLLRKL--N---LENVWLNCVECFTYAILLEKI 76 (438)
T ss_pred ccCccchHHHHHHHHHHhCCCCc---ccceeEEEeccCCCchhHHHHHHHhhc--C---CcceeeehHHhccHHHHHHHH
Confidence 46789999999999999876542 245667999999999999999999853 2 246899999999999999999
Q ss_pred HHHhcCCCCCC--CcH--HHH---HHHHHH--Hhc--CceEEEEEecCCCCCccChhHHHHhh---hC-CCCCcEEEEEc
Q 002308 229 LEALTGSTSNL--NAL--QSL---LISIDE--SIA--GKRFLLVLDDVWDGDYIKWEPFYRCL---KK-GLHGSKILITT 293 (938)
Q Consensus 229 ~~~l~~~~~~~--~~~--~~~---~~~l~~--~l~--~~~~LlVlDdv~~~~~~~~~~l~~~l---~~-~~~gs~ilvTt 293 (938)
+.+....+.+. ... +.. ...+.+ ... ++.++||||+++.-..-+ ..+...+ .. .....-+|+++
T Consensus 77 L~~~~~~d~dg~~~~~~~en~~d~i~~l~q~~~~t~~d~~~~liLDnad~lrD~~-a~ll~~l~~L~el~~~~~i~iils 155 (438)
T KOG2543|consen 77 LNKSQLADKDGDKVEGDAENFSDFIYLLVQWPAATNRDQKVFLILDNADALRDMD-AILLQCLFRLYELLNEPTIVIILS 155 (438)
T ss_pred HHHhccCCCchhhhhhHHHHHHHHHHHHHhhHHhhccCceEEEEEcCHHhhhccc-hHHHHHHHHHHHHhCCCceEEEEe
Confidence 99985322222 111 112 222222 111 468999999996532111 1111111 11 11223344444
Q ss_pred CChhh---hhhhcCC--ceEeCCCCChHHHHHHHHHh
Q 002308 294 RKESI---VSMMRST--DIISIEELAEEECWVLFKRL 325 (938)
Q Consensus 294 r~~~v---~~~~~~~--~~~~l~~L~~~~~~~lf~~~ 325 (938)
-..-. ...++.. .++....-+.++..+++.+.
T Consensus 156 ~~~~e~~y~~n~g~~~i~~l~fP~Ys~~e~~~Il~~~ 192 (438)
T KOG2543|consen 156 APSCEKQYLINTGTLEIVVLHFPQYSVEETQVILSRD 192 (438)
T ss_pred ccccHHHhhcccCCCCceEEecCCCCHHHHHHHHhcC
Confidence 43321 2112333 35667888889999988764
No 126
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.10 E-value=8.7e-07 Score=87.15 Aligned_cols=83 Identities=11% Similarity=-0.017 Sum_probs=55.5
Q ss_pred CCcCCceEEEEecCCCCCCCCCccchHHHHhhCCCCCCCCeEEEeeecCCCC-CCCchhccCCCCEEEEecCCCCCcCCC
Q 002308 721 KKYLSRLRLEFDKKGGGGGRRKNEDDQLLLEALQPPLNLKELEIHYYGGNTV-FPSWMASLTNLKSLDLCFCENCEQLPP 799 (938)
Q Consensus 721 ~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~-~p~~~~~l~~L~~L~L~~~~~~~~l~~ 799 (938)
++++.++.+..+.+.+ ..--+...++|.+..|+|+.+.+.+. --+.+..++.|..|.++++++.+.+..
T Consensus 198 Fpnv~sv~v~e~PlK~----------~s~ek~se~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d~l~~ 267 (418)
T KOG2982|consen 198 FPNVNSVFVCEGPLKT----------ESSEKGSEPFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLSDPLRG 267 (418)
T ss_pred cccchheeeecCcccc----------hhhcccCCCCCcchhhhhcccccccHHHHHHHcCCchhheeeccCCcccccccC
Confidence 4566666666665543 22334566777777888888776541 012345789999999999988776542
Q ss_pred -------CCCCCccceeeccc
Q 002308 800 -------LGKLPSLEQLFISY 813 (938)
Q Consensus 800 -------l~~l~~L~~L~L~~ 813 (938)
++.+++++.|+=+.
T Consensus 268 ~err~llIaRL~~v~vLNGsk 288 (418)
T KOG2982|consen 268 GERRFLLIARLTKVQVLNGSK 288 (418)
T ss_pred CcceEEEEeeccceEEecCcc
Confidence 67888888886553
No 127
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.09 E-value=0.00011 Score=84.39 Aligned_cols=196 Identities=16% Similarity=0.186 Sum_probs=110.4
Q ss_pred CceecchhhHHHHHHHHhccCcccCCCeEEEEEEccCCChHHHHHHHHhhhhhhhcccCeEEEEE-eCCCCCHHHHHHHH
Q 002308 150 EEICGRVGERNALLSMLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNHVEVKREFDKTLWVC-VSETFDEFRIAKAM 228 (938)
Q Consensus 150 ~~~vGr~~~~~~l~~~l~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~-~~~~~~~~~~~~~i 228 (938)
..++|.+..++.+..++.... -...+.++|+.|+||||+|+.+++...-...++...|.. +...+..-...+.+
T Consensus 16 ~eivGQe~i~~~L~~~i~~~r-----i~ha~Lf~Gp~GvGKttlA~~lAk~L~c~~~~~~~~~~~~~~~~Cg~C~sC~~~ 90 (620)
T PRK14954 16 ADITAQEHITHTIQNSLRMDR-----VGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDPVYLQEVTEPCGECESCRDF 90 (620)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-----CCeeEEEECCCCCCHHHHHHHHHHHhCCCCcCCccccccccCCCCccCHHHHHH
Confidence 568999999999999886432 345688999999999999999887532111111001110 00111111111111
Q ss_pred HHHhcC-----CCCCCCcHHHHHHHHHHH----hcCceEEEEEecCCCCCccChhHHHHhhhCCCCCcEEEEEc-CChhh
Q 002308 229 LEALTG-----STSNLNALQSLLISIDES----IAGKRFLLVLDDVWDGDYIKWEPFYRCLKKGLHGSKILITT-RKESI 298 (938)
Q Consensus 229 ~~~l~~-----~~~~~~~~~~~~~~l~~~----l~~~~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTt-r~~~v 298 (938)
...-.. ........+++...+... ..+++-++|+|+++.......+.+...+..-...+.+|++| +...+
T Consensus 91 ~~g~~~n~~~~d~~s~~~vd~Ir~l~e~~~~~P~~~~~KVvIIdEad~Lt~~a~naLLK~LEePp~~tv~IL~t~~~~kL 170 (620)
T PRK14954 91 DAGTSLNISEFDAASNNSVDDIRQLRENVRYGPQKGRYRVYIIDEVHMLSTAAFNAFLKTLEEPPPHAIFIFATTELHKI 170 (620)
T ss_pred hccCCCCeEEecccccCCHHHHHHHHHHHHhhhhcCCCEEEEEeChhhcCHHHHHHHHHHHhCCCCCeEEEEEeCChhhh
Confidence 110000 000111233333322221 23455578999997766556777888877655555555444 43344
Q ss_pred hhh-hcCCceEeCCCCChHHHHHHHHHhhcCCCCCchhhHHHHHHHHHHHhcCCChh
Q 002308 299 VSM-MRSTDIISIEELAEEECWVLFKRLAFFGRSTEECEKLEQIGQRIARKCKGLPL 354 (938)
Q Consensus 299 ~~~-~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl 354 (938)
... ......+++.+++.++....+.+.+...+.... .+.++.|++.++|..-
T Consensus 171 l~TI~SRc~~vef~~l~~~ei~~~L~~i~~~egi~I~----~eal~~La~~s~Gdlr 223 (620)
T PRK14954 171 PATIASRCQRFNFKRIPLDEIQSQLQMICRAEGIQID----ADALQLIARKAQGSMR 223 (620)
T ss_pred hHHHHhhceEEecCCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHhCCCHH
Confidence 333 344678999999999988888776543222111 2336788999999654
No 128
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=98.07 E-value=8.7e-05 Score=75.63 Aligned_cols=203 Identities=17% Similarity=0.116 Sum_probs=122.8
Q ss_pred Cceecc---hhhHHHHHHHHhccCcccCCCeEEEEEEccCCChHHHHHHHHhhhhhhhc----ccCeEEEEEeCCCCCHH
Q 002308 150 EEICGR---VGERNALLSMLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNHVEVKR----EFDKTLWVCVSETFDEF 222 (938)
Q Consensus 150 ~~~vGr---~~~~~~l~~~l~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~----~f~~~~wv~~~~~~~~~ 222 (938)
+.+||- .+.++++.+++..+. .....-+.|+|..|.|||++++.+.+..-... .--.++.|.+...++..
T Consensus 34 ~rWIgY~~A~~~L~~L~~Ll~~P~---~~Rmp~lLivG~snnGKT~Ii~rF~~~hp~~~d~~~~~~PVv~vq~P~~p~~~ 110 (302)
T PF05621_consen 34 DRWIGYPRAKEALDRLEELLEYPK---RHRMPNLLIVGDSNNGKTMIIERFRRLHPPQSDEDAERIPVVYVQMPPEPDER 110 (302)
T ss_pred CCeecCHHHHHHHHHHHHHHhCCc---ccCCCceEEecCCCCcHHHHHHHHHHHCCCCCCCCCccccEEEEecCCCCChH
Confidence 345553 345666777776654 34566799999999999999999987521110 11257788888899999
Q ss_pred HHHHHHHHHhcCCCCCCCcHHHHHHHHHHHhcC-ceEEEEEecCCCC---C---ccChhHHHHhhhCCCCCcEEEEEcCC
Q 002308 223 RIAKAMLEALTGSTSNLNALQSLLISIDESIAG-KRFLLVLDDVWDG---D---YIKWEPFYRCLKKGLHGSKILITTRK 295 (938)
Q Consensus 223 ~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~-~~~LlVlDdv~~~---~---~~~~~~l~~~l~~~~~gs~ilvTtr~ 295 (938)
.++..|+.+++.+.............+...++. +-=+||+|++.+. . +...-.....+.+.-.=+-|.+-|+.
T Consensus 111 ~~Y~~IL~~lgaP~~~~~~~~~~~~~~~~llr~~~vrmLIIDE~H~lLaGs~~~qr~~Ln~LK~L~NeL~ipiV~vGt~~ 190 (302)
T PF05621_consen 111 RFYSAILEALGAPYRPRDRVAKLEQQVLRLLRRLGVRMLIIDEFHNLLAGSYRKQREFLNALKFLGNELQIPIVGVGTRE 190 (302)
T ss_pred HHHHHHHHHhCcccCCCCCHHHHHHHHHHHHHHcCCcEEEeechHHHhcccHHHHHHHHHHHHHHhhccCCCeEEeccHH
Confidence 999999999998876666666666666566654 3448899999652 1 22223333344333334445666654
Q ss_pred hhhhhhh-----cCCceEeCCCCCh-HHHHHHHHHhhc--CCCCCchhhHHHHHHHHHHHhcCCChhHH
Q 002308 296 ESIVSMM-----RSTDIISIEELAE-EECWVLFKRLAF--FGRSTEECEKLEQIGQRIARKCKGLPLAA 356 (938)
Q Consensus 296 ~~v~~~~-----~~~~~~~l~~L~~-~~~~~lf~~~~~--~~~~~~~~~~~~~~~~~i~~~~~g~Plai 356 (938)
---+-.. +...++.+..... ++...|+..... .-.. ...-...++++.|...++|+.=-+
T Consensus 191 A~~al~~D~QLa~RF~~~~Lp~W~~d~ef~~LL~s~e~~LPLr~-~S~l~~~~la~~i~~~s~G~iG~l 258 (302)
T PF05621_consen 191 AYRALRTDPQLASRFEPFELPRWELDEEFRRLLASFERALPLRK-PSNLASPELARRIHERSEGLIGEL 258 (302)
T ss_pred HHHHhccCHHHHhccCCccCCCCCCCcHHHHHHHHHHHhCCCCC-CCCCCCHHHHHHHHHHcCCchHHH
Confidence 3211111 1124566666654 455555544321 1111 112234567899999999976433
No 129
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.07 E-value=0.00016 Score=83.70 Aligned_cols=180 Identities=19% Similarity=0.222 Sum_probs=111.7
Q ss_pred CceecchhhHHHHHHHHhccCcccCCCeEEEEEEccCCChHHHHHHHHhhhhhh---------------------hcccC
Q 002308 150 EEICGRVGERNALLSMLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNHVEV---------------------KREFD 208 (938)
Q Consensus 150 ~~~vGr~~~~~~l~~~l~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~v~~~~~~---------------------~~~f~ 208 (938)
..++|.+...+.+..++... .-.+.+.++|+.|+||||+|+.++....- ..+|+
T Consensus 17 ~~viGq~~~~~~L~~~i~~~-----~l~hayLf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~Cg~C~sC~~~~~~~~~n 91 (614)
T PRK14971 17 ESVVGQEALTTTLKNAIATN-----KLAHAYLFCGPRGVGKTTCARIFAKTINCQNLTADGEACNECESCVAFNEQRSYN 91 (614)
T ss_pred HHhcCcHHHHHHHHHHHHcC-----CCCeeEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCCCcchHHHHHhcCCCCc
Confidence 56899999999999998753 24567889999999999999988874210 01222
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHhcCceEEEEEecCCCCCccChhHHHHhhhCCCCCcE
Q 002308 209 KTLWVCVSETFDEFRIAKAMLEALTGSTSNLNALQSLLISIDESIAGKRFLLVLDDVWDGDYIKWEPFYRCLKKGLHGSK 288 (938)
Q Consensus 209 ~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ 288 (938)
+..+..+....+..+. +++.++...+ ..+++=++|+|++.......++.+...+..-...+.
T Consensus 92 -~~~ld~~~~~~vd~Ir-~li~~~~~~P----------------~~~~~KVvIIdea~~Ls~~a~naLLK~LEepp~~ti 153 (614)
T PRK14971 92 -IHELDAASNNSVDDIR-NLIEQVRIPP----------------QIGKYKIYIIDEVHMLSQAAFNAFLKTLEEPPSYAI 153 (614)
T ss_pred -eEEecccccCCHHHHH-HHHHHHhhCc----------------ccCCcEEEEEECcccCCHHHHHHHHHHHhCCCCCeE
Confidence 1222222211121111 1111111000 123455889999987766677788888876555666
Q ss_pred EEE-EcCChhhhhh-hcCCceEeCCCCChHHHHHHHHHhhcCCCCCchhhHHHHHHHHHHHhcCCChhHH
Q 002308 289 ILI-TTRKESIVSM-MRSTDIISIEELAEEECWVLFKRLAFFGRSTEECEKLEQIGQRIARKCKGLPLAA 356 (938)
Q Consensus 289 ilv-Ttr~~~v~~~-~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai 356 (938)
+|+ |++...+... ......+++.+++.++....+...+...+.... .+.+..|++.++|..--+
T Consensus 154 fIL~tt~~~kIl~tI~SRc~iv~f~~ls~~ei~~~L~~ia~~egi~i~----~~al~~La~~s~gdlr~a 219 (614)
T PRK14971 154 FILATTEKHKILPTILSRCQIFDFNRIQVADIVNHLQYVASKEGITAE----PEALNVIAQKADGGMRDA 219 (614)
T ss_pred EEEEeCCchhchHHHHhhhheeecCCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCCHHHH
Confidence 555 4444444433 344678999999999999888876644332222 223678899999866544
No 130
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=98.05 E-value=2e-05 Score=85.17 Aligned_cols=120 Identities=11% Similarity=0.146 Sum_probs=77.3
Q ss_pred CceecchhhHHHHHHHHhccCcccCCCeEEEEEEccCCChHHHHHHHHhhhhhhhcccCeEEEEEeCCCCCHHHHHHHHH
Q 002308 150 EEICGRVGERNALLSMLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNHVEVKREFDKTLWVCVSETFDEFRIAKAML 229 (938)
Q Consensus 150 ~~~vGr~~~~~~l~~~l~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 229 (938)
..+++.+...+.+...+.. .+.+.++|++|+|||++|+.+++.......|+.+.||.++...+..+......
T Consensus 175 ~d~~i~e~~le~l~~~L~~--------~~~iil~GppGtGKT~lA~~la~~l~~~~~~~~v~~VtFHpsySYeDFI~G~r 246 (459)
T PRK11331 175 NDLFIPETTIETILKRLTI--------KKNIILQGPPGVGKTFVARRLAYLLTGEKAPQRVNMVQFHQSYSYEDFIQGYR 246 (459)
T ss_pred hcccCCHHHHHHHHHHHhc--------CCCEEEECCCCCCHHHHHHHHHHHhcCCcccceeeEEeecccccHHHHhcccC
Confidence 4578888899999999874 24688899999999999999998643344678889999998877666543221
Q ss_pred HHhcCCCCCCCcHH-HHHHHHHHHh--cCceEEEEEecCCCCCccC-hhHHHHhhh
Q 002308 230 EALTGSTSNLNALQ-SLLISIDESI--AGKRFLLVLDDVWDGDYIK-WEPFYRCLK 281 (938)
Q Consensus 230 ~~l~~~~~~~~~~~-~~~~~l~~~l--~~~~~LlVlDdv~~~~~~~-~~~l~~~l~ 281 (938)
.......-.. ...+.+.+.. .++++++|+|++...+... +.++...+.
T Consensus 247 ----P~~vgy~~~~G~f~~~~~~A~~~p~~~~vliIDEINRani~kiFGel~~lLE 298 (459)
T PRK11331 247 ----PNGVGFRRKDGIFYNFCQQAKEQPEKKYVFIIDEINRANLSKVFGEVMMLME 298 (459)
T ss_pred ----CCCCCeEecCchHHHHHHHHHhcccCCcEEEEehhhccCHHHhhhhhhhhcc
Confidence 1111110001 1122222222 2468999999998776443 445544444
No 131
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=98.05 E-value=0.00014 Score=81.22 Aligned_cols=179 Identities=17% Similarity=0.179 Sum_probs=106.7
Q ss_pred CceecchhhHHHHHHHHhccCcccCCCeEEEEEEccCCChHHHHHHHHhhhhhhhc---------------------ccC
Q 002308 150 EEICGRVGERNALLSMLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNHVEVKR---------------------EFD 208 (938)
Q Consensus 150 ~~~vGr~~~~~~l~~~l~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~---------------------~f~ 208 (938)
.+++|.+..++.+..++.... -.+.+.++|+.|+||||+|+.+++...-.. +++
T Consensus 17 ~diiGq~~~v~~L~~~i~~~~-----i~ha~Lf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~c~~c~~C~~i~~~~~~d 91 (451)
T PRK06305 17 SEILGQDAVVAVLKNALRFNR-----AAHAYLFSGIRGTGKTTLARIFAKALNCQNPTEDQEPCNQCASCKEISSGTSLD 91 (451)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-----CceEEEEEcCCCCCHHHHHHHHHHHhcCCCcccCCCCCcccHHHHHHhcCCCCc
Confidence 578999999999999987432 346788999999999999999987421110 111
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHH-HhcCceEEEEEecCCCCCccChhHHHHhhhCCCCCc
Q 002308 209 KTLWVCVSETFDEFRIAKAMLEALTGSTSNLNALQSLLISIDE-SIAGKRFLLVLDDVWDGDYIKWEPFYRCLKKGLHGS 287 (938)
Q Consensus 209 ~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~-~l~~~~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs 287 (938)
.+++.......+ .+..++...+.. -..+++-++|+|++........+.+...+.......
T Consensus 92 -~~~i~g~~~~gi------------------d~ir~i~~~l~~~~~~~~~kvvIIdead~lt~~~~n~LLk~lEep~~~~ 152 (451)
T PRK06305 92 -VLEIDGASHRGI------------------EDIRQINETVLFTPSKSRYKIYIIDEVHMLTKEAFNSLLKTLEEPPQHV 152 (451)
T ss_pred -eEEeeccccCCH------------------HHHHHHHHHHHhhhhcCCCEEEEEecHHhhCHHHHHHHHHHhhcCCCCc
Confidence 111111111111 111111111111 012556688999997655445566777776654566
Q ss_pred EEEEEcCC-hhhhhh-hcCCceEeCCCCChHHHHHHHHHhhcCCCCCchhhHHHHHHHHHHHhcCCChhHH
Q 002308 288 KILITTRK-ESIVSM-MRSTDIISIEELAEEECWVLFKRLAFFGRSTEECEKLEQIGQRIARKCKGLPLAA 356 (938)
Q Consensus 288 ~ilvTtr~-~~v~~~-~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai 356 (938)
.+|++|.. ..+... ......+++.++++++....+...+...+.... .+.+..|++.++|.+.-+
T Consensus 153 ~~Il~t~~~~kl~~tI~sRc~~v~f~~l~~~el~~~L~~~~~~eg~~i~----~~al~~L~~~s~gdlr~a 219 (451)
T PRK06305 153 KFFLATTEIHKIPGTILSRCQKMHLKRIPEETIIDKLALIAKQEGIETS----REALLPIARAAQGSLRDA 219 (451)
T ss_pred eEEEEeCChHhcchHHHHhceEEeCCCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCCHHHH
Confidence 66666543 333222 234568999999999998888876543222111 234678899999866433
No 132
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.04 E-value=0.00018 Score=83.17 Aligned_cols=196 Identities=13% Similarity=0.171 Sum_probs=112.6
Q ss_pred CceecchhhHHHHHHHHhccCcccCCCeEEEEEEccCCChHHHHHHHHhhhhhhhcccCeEEEEEeCCCCCHHHHHHHHH
Q 002308 150 EEICGRVGERNALLSMLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNHVEVKREFDKTLWVCVSETFDEFRIAKAML 229 (938)
Q Consensus 150 ~~~vGr~~~~~~l~~~l~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 229 (938)
..++|.+...+.+..++.... -.+.+.++|+.|+||||+|+.+++..--. ..... ....+..-...+.+.
T Consensus 16 ~~liGq~~i~~~L~~~l~~~r-----l~~a~Lf~Gp~G~GKttlA~~lAk~L~c~-~~~~~----~~~~Cg~C~~C~~i~ 85 (620)
T PRK14948 16 DELVGQEAIATTLKNALISNR-----IAPAYLFTGPRGTGKTSSARILAKSLNCL-NSDKP----TPEPCGKCELCRAIA 85 (620)
T ss_pred hhccChHHHHHHHHHHHHcCC-----CCceEEEECCCCCChHHHHHHHHHHhcCC-CcCCC----CCCCCcccHHHHHHh
Confidence 568999999999999887532 23567899999999999999998853111 11000 001111112222222
Q ss_pred HHhcC-----CCCCCCcHHHHHHHHHHH----hcCceEEEEEecCCCCCccChhHHHHhhhCCCCCcEEEEEcCCh-hhh
Q 002308 230 EALTG-----STSNLNALQSLLISIDES----IAGKRFLLVLDDVWDGDYIKWEPFYRCLKKGLHGSKILITTRKE-SIV 299 (938)
Q Consensus 230 ~~l~~-----~~~~~~~~~~~~~~l~~~----l~~~~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtr~~-~v~ 299 (938)
..... ........+++...+... ..+++-++|+|+++......++.++..+..-.....+|++|.+. .+.
T Consensus 86 ~g~h~D~~ei~~~~~~~vd~IReii~~a~~~p~~~~~KViIIDEad~Lt~~a~naLLK~LEePp~~tvfIL~t~~~~~ll 165 (620)
T PRK14948 86 AGNALDVIEIDAASNTGVDNIRELIERAQFAPVQARWKVYVIDECHMLSTAAFNALLKTLEEPPPRVVFVLATTDPQRVL 165 (620)
T ss_pred cCCCccEEEEeccccCCHHHHHHHHHHHhhChhcCCceEEEEECccccCHHHHHHHHHHHhcCCcCeEEEEEeCChhhhh
Confidence 21110 001112223333222211 12455689999998766666777888877644455555444433 333
Q ss_pred hh-hcCCceEeCCCCChHHHHHHHHHhhcCCCCCchhhHHHHHHHHHHHhcCCChhHHHHH
Q 002308 300 SM-MRSTDIISIEELAEEECWVLFKRLAFFGRSTEECEKLEQIGQRIARKCKGLPLAAKTM 359 (938)
Q Consensus 300 ~~-~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~~ 359 (938)
.. ......+++..++.++....+.+.+...+.... .+.+..|++.++|.+..+...
T Consensus 166 pTIrSRc~~~~f~~l~~~ei~~~L~~ia~kegi~is----~~al~~La~~s~G~lr~A~~l 222 (620)
T PRK14948 166 PTIISRCQRFDFRRIPLEAMVQHLSEIAEKESIEIE----PEALTLVAQRSQGGLRDAESL 222 (620)
T ss_pred HHHHhheeEEEecCCCHHHHHHHHHHHHHHhCCCCC----HHHHHHHHHHcCCCHHHHHHH
Confidence 22 234568889999999988887776543222111 133678889999987655433
No 133
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.02 E-value=7.4e-07 Score=86.46 Aligned_cols=241 Identities=20% Similarity=0.091 Sum_probs=134.1
Q ss_pred cCCCeeEEecCCCCCCcc----cCccccccCCCCeeeecCCccc----cc-------cccccCCCCccEEEcCCCCCccc
Q 002308 566 ESTSLRALDFPSFYLPLE----IPRNIEKLVHLRYLNLSDQKIK----KL-------PETLCELYNLEKLDISGCSDLRE 630 (938)
Q Consensus 566 ~~~~Lr~L~L~~n~~~~~----lp~~~~~l~~L~~L~L~~~~i~----~l-------p~~i~~l~~L~~L~l~~~~~l~~ 630 (938)
.+..+..++||+|.+.+. +...|.+-.+|+.-+++.-... .+ .+.+-++++|++.+||.|-+-..
T Consensus 28 ~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~ 107 (388)
T COG5238 28 MMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSE 107 (388)
T ss_pred hhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCcc
Confidence 356666667777664332 3333444456666666543211 22 23455778888888888876555
Q ss_pred cccc----ccccCccceeecCCCcccccCC-------------ccCCCCCCCcccCeeEecCCCCCCCCccccccccccc
Q 002308 631 LPKG----IGKLINMKHLLNSGTRSLRYMP-------------VGIGRLTGLRTLGEFHVSAGGGVDGSKACRLESLKNL 693 (938)
Q Consensus 631 lp~~----i~~l~~L~~L~l~~~~~~~~~p-------------~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~L 693 (938)
.|+. |.+-+.|.||.+++|.....-- .....-+.|++..+..|.+.+.........+..-..|
T Consensus 108 ~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRlengs~~~~a~~l~sh~~l 187 (388)
T COG5238 108 FPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLENGSKELSAALLESHENL 187 (388)
T ss_pred cchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhccCcHHHHHHHHHhhcCc
Confidence 5544 3455778888888774332111 1122345677776666665543221111122222455
Q ss_pred ccCcceeecCcCCCCChhhhhhhhccCCCcCCceEEEEecCCCCCCCCCccchHHHHhhCCCCCCCCeEEEeeecCCCCC
Q 002308 694 EHLQVCCIRRLGDVSDVGEAKLLELDKKKYLSRLRLEFDKKGGGGGRRKNEDDQLLLEALQPPLNLKELEIHYYGGNTVF 773 (938)
Q Consensus 694 ~~L~l~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~ 773 (938)
+.+.+..|.+-. ..........+..+.+|+.|+|..|.++- .....+...+...+.|+.|.+..|.++..-
T Consensus 188 k~vki~qNgIrp--egv~~L~~~gl~y~~~LevLDlqDNtft~-------~gS~~La~al~~W~~lrEL~lnDClls~~G 258 (388)
T COG5238 188 KEVKIQQNGIRP--EGVTMLAFLGLFYSHSLEVLDLQDNTFTL-------EGSRYLADALCEWNLLRELRLNDCLLSNEG 258 (388)
T ss_pred eeEEeeecCcCc--chhHHHHHHHHHHhCcceeeeccccchhh-------hhHHHHHHHhcccchhhhccccchhhcccc
Confidence 666665554321 11122333345567788888888876653 122334556666677888888888765531
Q ss_pred CC-c---hh--ccCCCCEEEEecCCCCCc------CCC--CCCCCccceeeccccc
Q 002308 774 PS-W---MA--SLTNLKSLDLCFCENCEQ------LPP--LGKLPSLEQLFISYMS 815 (938)
Q Consensus 774 p~-~---~~--~l~~L~~L~L~~~~~~~~------l~~--l~~l~~L~~L~L~~~~ 815 (938)
.. . +. ..|+|..|.+.+|..... ++. -+.+|-|..|.+.+|+
T Consensus 259 ~~~v~~~f~e~~~p~l~~L~~~Yne~~~~~i~~~~l~~~e~~~~p~L~~le~ngNr 314 (388)
T COG5238 259 VKSVLRRFNEKFVPNLMPLPGDYNERRGGIILDISLNEFEQDAVPLLVDLERNGNR 314 (388)
T ss_pred HHHHHHHhhhhcCCCccccccchhhhcCceeeeechhhhhhcccHHHHHHHHccCc
Confidence 11 1 11 467788888887764321 222 3567888888888877
No 134
>CHL00181 cbbX CbbX; Provisional
Probab=98.02 E-value=0.00031 Score=73.41 Aligned_cols=137 Identities=15% Similarity=0.115 Sum_probs=75.4
Q ss_pred eEEEEEEccCCChHHHHHHHHhhhhhhhcccCeEEEEEeCCCCCHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHhcCc
Q 002308 177 LHIISIVGMGGIGKTTLAQLACNHVEVKREFDKTLWVCVSETFDEFRIAKAMLEALTGSTSNLNALQSLLISIDESIAGK 256 (938)
Q Consensus 177 ~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~ 256 (938)
...+.++|++|+||||+|+.++......+.-...-|+.++. .. +...+.+.. .......+.+. .
T Consensus 59 ~~~ill~G~pGtGKT~lAr~la~~~~~~g~~~~~~~~~v~~----~~----l~~~~~g~~-----~~~~~~~l~~a---~ 122 (287)
T CHL00181 59 GLHMSFTGSPGTGKTTVALKMADILYKLGYIKKGHLLTVTR----DD----LVGQYIGHT-----APKTKEVLKKA---M 122 (287)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHcCCCCCCceEEecH----HH----HHHHHhccc-----hHHHHHHHHHc---c
Confidence 34588999999999999999988421111111122444442 12 222222111 11112222222 2
Q ss_pred eEEEEEecCCCC---------CccChhHHHHhhhCCCCCcEEEEEcCChhhhhhh--------cCCceEeCCCCChHHHH
Q 002308 257 RFLLVLDDVWDG---------DYIKWEPFYRCLKKGLHGSKILITTRKESIVSMM--------RSTDIISIEELAEEECW 319 (938)
Q Consensus 257 ~~LlVlDdv~~~---------~~~~~~~l~~~l~~~~~gs~ilvTtr~~~v~~~~--------~~~~~~~l~~L~~~~~~ 319 (938)
.-+|++|++... .......+...+.....+.+||+++......... .-...+.+.+++.++..
T Consensus 123 ggVLfIDE~~~l~~~~~~~~~~~e~~~~L~~~me~~~~~~~vI~ag~~~~~~~~~~~np~L~sR~~~~i~F~~~t~~el~ 202 (287)
T CHL00181 123 GGVLFIDEAYYLYKPDNERDYGSEAIEILLQVMENQRDDLVVIFAGYKDRMDKFYESNPGLSSRIANHVDFPDYTPEELL 202 (287)
T ss_pred CCEEEEEccchhccCCCccchHHHHHHHHHHHHhcCCCCEEEEEeCCcHHHHHHHhcCHHHHHhCCceEEcCCcCHHHHH
Confidence 248999999642 1112233444455545566777777644332211 11357899999999999
Q ss_pred HHHHHhhcCC
Q 002308 320 VLFKRLAFFG 329 (938)
Q Consensus 320 ~lf~~~~~~~ 329 (938)
+++...+...
T Consensus 203 ~I~~~~l~~~ 212 (287)
T CHL00181 203 QIAKIMLEEQ 212 (287)
T ss_pred HHHHHHHHHh
Confidence 9998887543
No 135
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=98.01 E-value=0.00017 Score=75.56 Aligned_cols=134 Identities=16% Similarity=0.146 Sum_probs=74.6
Q ss_pred EEEEEEccCCChHHHHHHHHhhhhhhhcccCeEEEEEeCCCCCHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHhcCce
Q 002308 178 HIISIVGMGGIGKTTLAQLACNHVEVKREFDKTLWVCVSETFDEFRIAKAMLEALTGSTSNLNALQSLLISIDESIAGKR 257 (938)
Q Consensus 178 ~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~ 257 (938)
.-+.++|++|+|||++|+.++......+.....-|+.++. . ++...+.+.. .......+.+. ..
T Consensus 59 ~~vll~G~pGTGKT~lA~~ia~~l~~~g~~~~~~~v~v~~----~----~l~~~~~g~~-----~~~~~~~~~~a---~~ 122 (284)
T TIGR02880 59 LHMSFTGNPGTGKTTVALRMAQILHRLGYVRKGHLVSVTR----D----DLVGQYIGHT-----APKTKEILKRA---MG 122 (284)
T ss_pred ceEEEEcCCCCCHHHHHHHHHHHHHHcCCcccceEEEecH----H----HHhHhhcccc-----hHHHHHHHHHc---cC
Confidence 3688999999999999988877422111111112444442 1 2222222211 11122222222 23
Q ss_pred EEEEEecCCCC---------CccChhHHHHhhhCCCCCcEEEEEcCChhhhhhhc--------CCceEeCCCCChHHHHH
Q 002308 258 FLLVLDDVWDG---------DYIKWEPFYRCLKKGLHGSKILITTRKESIVSMMR--------STDIISIEELAEEECWV 320 (938)
Q Consensus 258 ~LlVlDdv~~~---------~~~~~~~l~~~l~~~~~gs~ilvTtr~~~v~~~~~--------~~~~~~l~~L~~~~~~~ 320 (938)
-+|+||++... ....+..+...+.....+.+||+++.......... -...+++.+++.+|..+
T Consensus 123 gvL~iDEi~~L~~~~~~~~~~~~~~~~Ll~~le~~~~~~~vI~a~~~~~~~~~~~~np~L~sR~~~~i~fp~l~~edl~~ 202 (284)
T TIGR02880 123 GVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENQRDDLVVILAGYKDRMDSFFESNPGFSSRVAHHVDFPDYSEAELLV 202 (284)
T ss_pred cEEEEechhhhccCCCccchHHHHHHHHHHHHhcCCCCEEEEEeCCcHHHHHHHhhCHHHHhhCCcEEEeCCcCHHHHHH
Confidence 58899999632 11123445556655555667777766443222111 13578999999999999
Q ss_pred HHHHhhc
Q 002308 321 LFKRLAF 327 (938)
Q Consensus 321 lf~~~~~ 327 (938)
++...+-
T Consensus 203 I~~~~l~ 209 (284)
T TIGR02880 203 IAGLMLK 209 (284)
T ss_pred HHHHHHH
Confidence 9988764
No 136
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=98.00 E-value=0.00021 Score=81.64 Aligned_cols=193 Identities=13% Similarity=0.086 Sum_probs=112.0
Q ss_pred CceecchhhHHHHHHHHhccCcccCCCeEEEEEEccCCChHHHHHHHHhhhhhhhcccCeEEEEEeCCCCCHHHHHHHHH
Q 002308 150 EEICGRVGERNALLSMLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNHVEVKREFDKTLWVCVSETFDEFRIAKAML 229 (938)
Q Consensus 150 ~~~vGr~~~~~~l~~~l~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 229 (938)
..++|.+..++.+..++... .-.+.+.++|+.|+||||+|+.+++..--...... ..+.... ..+.|.
T Consensus 16 ~diiGqe~iv~~L~~~i~~~-----~i~hayLf~Gp~G~GKTt~Ar~lAk~L~c~~~~~~---~pC~~C~----~C~~i~ 83 (563)
T PRK06647 16 NSLEGQDFVVETLKHSIESN-----KIANAYIFSGPRGVGKTSSARAFARCLNCVNGPTP---MPCGECS----SCKSID 83 (563)
T ss_pred HHccCcHHHHHHHHHHHHcC-----CCCeEEEEECCCCCCHHHHHHHHHHhhccccCCCC---CCCccch----HHHHHH
Confidence 57899999999999999753 24567889999999999999999885211110000 0000000 001111
Q ss_pred HHhc-----CCCCCCCcHHHHHHHH---HH-HhcCceEEEEEecCCCCCccChhHHHHhhhCCCCCcEEEEEcCC-hhhh
Q 002308 230 EALT-----GSTSNLNALQSLLISI---DE-SIAGKRFLLVLDDVWDGDYIKWEPFYRCLKKGLHGSKILITTRK-ESIV 299 (938)
Q Consensus 230 ~~l~-----~~~~~~~~~~~~~~~l---~~-~l~~~~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtr~-~~v~ 299 (938)
..-. .........++....+ .. -..+++-++|+|++.......++.+...+........+|++|.. ..+.
T Consensus 84 ~~~~~dv~~idgas~~~vddIr~l~e~~~~~p~~~~~KVvIIDEa~~Ls~~a~naLLK~LEepp~~~vfI~~tte~~kL~ 163 (563)
T PRK06647 84 NDNSLDVIEIDGASNTSVQDVRQIKEEIMFPPASSRYRVYIIDEVHMLSNSAFNALLKTIEEPPPYIVFIFATTEVHKLP 163 (563)
T ss_pred cCCCCCeEEecCcccCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhcCHHHHHHHHHhhccCCCCEEEEEecCChHHhH
Confidence 1000 0000011222222221 11 12355668999999877666677787777765556666665544 3333
Q ss_pred hh-hcCCceEeCCCCChHHHHHHHHHhhcCCCCCchhhHHHHHHHHHHHhcCCChhHHHH
Q 002308 300 SM-MRSTDIISIEELAEEECWVLFKRLAFFGRSTEECEKLEQIGQRIARKCKGLPLAAKT 358 (938)
Q Consensus 300 ~~-~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~ 358 (938)
.. ......++..+++.++..+.+...+...+.... .+.+..|++.++|.+..+..
T Consensus 164 ~tI~SRc~~~~f~~l~~~el~~~L~~i~~~egi~id----~eAl~lLa~~s~GdlR~als 219 (563)
T PRK06647 164 ATIKSRCQHFNFRLLSLEKIYNMLKKVCLEDQIKYE----DEALKWIAYKSTGSVRDAYT 219 (563)
T ss_pred HHHHHhceEEEecCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCCHHHHHH
Confidence 22 233567899999999998888877643332222 23366788899997754433
No 137
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=97.99 E-value=7.2e-05 Score=80.69 Aligned_cols=149 Identities=16% Similarity=0.171 Sum_probs=88.0
Q ss_pred CCceecchhhHHHHHHHHhccCcccCCCeEEEEEEccCCChHHHHHHHHhhhhhhhcccCeEEEEEeCCCCCHHHHHHHH
Q 002308 149 EEEICGRVGERNALLSMLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNHVEVKREFDKTLWVCVSETFDEFRIAKAM 228 (938)
Q Consensus 149 ~~~~vGr~~~~~~l~~~l~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i 228 (938)
-..++|.+...+.+..++... ....++.++|++|+|||++|+.+++. ... ....++.+. .....+ +..
T Consensus 20 ~~~~~~~~~~~~~l~~~~~~~-----~~~~~lll~G~~G~GKT~la~~l~~~--~~~---~~~~i~~~~-~~~~~i-~~~ 87 (316)
T PHA02544 20 IDECILPAADKETFKSIVKKG-----RIPNMLLHSPSPGTGKTTVAKALCNE--VGA---EVLFVNGSD-CRIDFV-RNR 87 (316)
T ss_pred HHHhcCcHHHHHHHHHHHhcC-----CCCeEEEeeCcCCCCHHHHHHHHHHH--hCc---cceEeccCc-ccHHHH-HHH
Confidence 467899999999999988742 24578888999999999999999884 222 233444443 222111 111
Q ss_pred HHHhcCCCCCCCcHHHHHHHHHHHhcCceEEEEEecCCCC-CccChhHHHHhhhCCCCCcEEEEEcCChhh-hhh-hcCC
Q 002308 229 LEALTGSTSNLNALQSLLISIDESIAGKRFLLVLDDVWDG-DYIKWEPFYRCLKKGLHGSKILITTRKESI-VSM-MRST 305 (938)
Q Consensus 229 ~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~-~~~~~~~l~~~l~~~~~gs~ilvTtr~~~v-~~~-~~~~ 305 (938)
+..+... . -..+.+-++|+||+... .......+...+.....++++|+||..... ... .+..
T Consensus 88 l~~~~~~-------------~--~~~~~~~vliiDe~d~l~~~~~~~~L~~~le~~~~~~~~Ilt~n~~~~l~~~l~sR~ 152 (316)
T PHA02544 88 LTRFAST-------------V--SLTGGGKVIIIDEFDRLGLADAQRHLRSFMEAYSKNCSFIITANNKNGIIEPLRSRC 152 (316)
T ss_pred HHHHHHh-------------h--cccCCCeEEEEECcccccCHHHHHHHHHHHHhcCCCceEEEEcCChhhchHHHHhhc
Confidence 1111000 0 01134558899999765 222233455555555567788888875431 111 1223
Q ss_pred ceEeCCCCChHHHHHHHHH
Q 002308 306 DIISIEELAEEECWVLFKR 324 (938)
Q Consensus 306 ~~~~l~~L~~~~~~~lf~~ 324 (938)
..+.+...+.++..+++..
T Consensus 153 ~~i~~~~p~~~~~~~il~~ 171 (316)
T PHA02544 153 RVIDFGVPTKEEQIEMMKQ 171 (316)
T ss_pred eEEEeCCCCHHHHHHHHHH
Confidence 4677777777777766554
No 138
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=97.99 E-value=9.3e-05 Score=89.10 Aligned_cols=153 Identities=18% Similarity=0.212 Sum_probs=86.2
Q ss_pred CceecchhhHHHHHHHHhccCcccCCCeEEEEEEccCCChHHHHHHHHhhhhhhhcc------cCeEEE-EEeCCCCCHH
Q 002308 150 EEICGRVGERNALLSMLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNHVEVKRE------FDKTLW-VCVSETFDEF 222 (938)
Q Consensus 150 ~~~vGr~~~~~~l~~~l~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~------f~~~~w-v~~~~~~~~~ 222 (938)
+.++||+.++.+++..|... ...-+.++|++|+||||+|+.++.. +... ....+| +..+.
T Consensus 187 d~~iGr~~ei~~~i~~l~r~------~~~n~lLvG~pGvGKTal~~~La~~--i~~~~v~~~l~~~~i~~l~l~~----- 253 (852)
T TIGR03345 187 DPVLGRDDEIRQMIDILLRR------RQNNPILTGEAGVGKTAVVEGLALR--IAAGDVPPALRNVRLLSLDLGL----- 253 (852)
T ss_pred CcccCCHHHHHHHHHHHhcC------CcCceeEECCCCCCHHHHHHHHHHH--HhhCCCCccccCCeEEEeehhh-----
Confidence 46899999999999988753 2335679999999999999999984 3221 122232 22221
Q ss_pred HHHHHHHHHhcCCCCCCCcHHH-HHHHHHHHh-cCceEEEEEecCCCCC-------ccChh-HHHHhhhCCCCCcEEEEE
Q 002308 223 RIAKAMLEALTGSTSNLNALQS-LLISIDESI-AGKRFLLVLDDVWDGD-------YIKWE-PFYRCLKKGLHGSKILIT 292 (938)
Q Consensus 223 ~~~~~i~~~l~~~~~~~~~~~~-~~~~l~~~l-~~~~~LlVlDdv~~~~-------~~~~~-~l~~~l~~~~~gs~ilvT 292 (938)
+........+.++ +...+.+.- .+++.+|++|+++... ..+-. .+...+.. ..-++|-|
T Consensus 254 ---------l~ag~~~~ge~e~~lk~ii~e~~~~~~~~ILfIDEih~l~~~g~~~~~~d~~n~Lkp~l~~--G~l~~Iga 322 (852)
T TIGR03345 254 ---------LQAGASVKGEFENRLKSVIDEVKASPQPIILFIDEAHTLIGAGGQAGQGDAANLLKPALAR--GELRTIAA 322 (852)
T ss_pred ---------hhcccccchHHHHHHHHHHHHHHhcCCCeEEEEeChHHhccCCCccccccHHHHhhHHhhC--CCeEEEEe
Confidence 0000001111212 122222221 2468999999985421 11111 23333332 22456666
Q ss_pred cCChhhhhh-------hcCCceEeCCCCChHHHHHHHHHhh
Q 002308 293 TRKESIVSM-------MRSTDIISIEELAEEECWVLFKRLA 326 (938)
Q Consensus 293 tr~~~v~~~-------~~~~~~~~l~~L~~~~~~~lf~~~~ 326 (938)
|...+.... ....+.+.+.+++.+++.++++...
T Consensus 323 TT~~e~~~~~~~d~AL~rRf~~i~v~eps~~~~~~iL~~~~ 363 (852)
T TIGR03345 323 TTWAEYKKYFEKDPALTRRFQVVKVEEPDEETAIRMLRGLA 363 (852)
T ss_pred cCHHHHhhhhhccHHHHHhCeEEEeCCCCHHHHHHHHHHHH
Confidence 665433211 1224689999999999999976543
No 139
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=97.97 E-value=0.00016 Score=75.20 Aligned_cols=162 Identities=12% Similarity=0.124 Sum_probs=81.4
Q ss_pred ceecchhhHHHHHHHHhcc--------Cc-ccCCCeEEEEEEccCCChHHHHHHHHhhhhhhhcccCeEEEEEeCCCCCH
Q 002308 151 EICGRVGERNALLSMLLCE--------SS-EQQKGLHIISIVGMGGIGKTTLAQLACNHVEVKREFDKTLWVCVSETFDE 221 (938)
Q Consensus 151 ~~vGr~~~~~~l~~~l~~~--------~~-~~~~~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~ 221 (938)
.++|.+...++|.+..... .+ ...+....+.++|++|+||||+|+.+++.......-....++.++.
T Consensus 7 ~~~Gl~~vk~~i~~~~~~~~~~~~~~~~g~~~~~~~~~vll~GppGtGKTtlA~~ia~~l~~~~~~~~~~~v~~~~---- 82 (261)
T TIGR02881 7 RMVGLDEVKALIKEIYAWIQINEKRKEEGLKTSKQVLHMIFKGNPGTGKTTVARILGKLFKEMNVLSKGHLIEVER---- 82 (261)
T ss_pred HhcChHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCcceEEEEcCCCCCHHHHHHHHHHHHHhcCcccCCceEEecH----
Confidence 4788777666655432211 00 0023456788999999999999999987421111111112333322
Q ss_pred HHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHhcCceEEEEEecCCCCCc--------cChhHHHHhhhCCCCCcEEEEEc
Q 002308 222 FRIAKAMLEALTGSTSNLNALQSLLISIDESIAGKRFLLVLDDVWDGDY--------IKWEPFYRCLKKGLHGSKILITT 293 (938)
Q Consensus 222 ~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~~--------~~~~~l~~~l~~~~~gs~ilvTt 293 (938)
.++ .....+ .........+.+. ..-+|++|++..-.. ...+.+...+........+|+++
T Consensus 83 ~~l----~~~~~g-----~~~~~~~~~~~~a---~~~VL~IDE~~~L~~~~~~~~~~~~i~~Ll~~~e~~~~~~~vila~ 150 (261)
T TIGR02881 83 ADL----VGEYIG-----HTAQKTREVIKKA---LGGVLFIDEAYSLARGGEKDFGKEAIDTLVKGMEDNRNEFVLILAG 150 (261)
T ss_pred HHh----hhhhcc-----chHHHHHHHHHhc---cCCEEEEechhhhccCCccchHHHHHHHHHHHHhccCCCEEEEecC
Confidence 111 111110 0011112222221 124889999965221 12233444444433344555665
Q ss_pred CChhhhh------hh-cC-CceEeCCCCChHHHHHHHHHhhcC
Q 002308 294 RKESIVS------MM-RS-TDIISIEELAEEECWVLFKRLAFF 328 (938)
Q Consensus 294 r~~~v~~------~~-~~-~~~~~l~~L~~~~~~~lf~~~~~~ 328 (938)
...+... .. .. ...+.+.+++.++..+++.+.+..
T Consensus 151 ~~~~~~~~~~~~p~L~sRf~~~i~f~~~~~~el~~Il~~~~~~ 193 (261)
T TIGR02881 151 YSDEMDYFLSLNPGLRSRFPISIDFPDYTVEELMEIAERMVKE 193 (261)
T ss_pred CcchhHHHHhcChHHHhccceEEEECCCCHHHHHHHHHHHHHH
Confidence 5433211 11 11 246889999999999999887643
No 140
>PRK06620 hypothetical protein; Validated
Probab=97.97 E-value=0.00021 Score=71.26 Aligned_cols=134 Identities=16% Similarity=0.116 Sum_probs=78.2
Q ss_pred EEEEEEccCCChHHHHHHHHhhhhhhhcccCeEEEEEeCCCCCHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHhcCce
Q 002308 178 HIISIVGMGGIGKTTLAQLACNHVEVKREFDKTLWVCVSETFDEFRIAKAMLEALTGSTSNLNALQSLLISIDESIAGKR 257 (938)
Q Consensus 178 ~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~ 257 (938)
+.+.|+|++|+|||+|++.+++.. .. .++. ..+.. + +..+ ..
T Consensus 45 ~~l~l~Gp~G~GKThLl~a~~~~~--~~-----~~~~--~~~~~---------------------~-------~~~~-~~ 86 (214)
T PRK06620 45 FTLLIKGPSSSGKTYLTKIWQNLS--NA-----YIIK--DIFFN---------------------E-------EILE-KY 86 (214)
T ss_pred ceEEEECCCCCCHHHHHHHHHhcc--CC-----EEcc--hhhhc---------------------h-------hHHh-cC
Confidence 678999999999999999887732 11 1211 00000 0 0111 22
Q ss_pred EEEEEecCCCCCccChhHHHHhhhC-CCCCcEEEEEcCChh-------hhhhhcCCceEeCCCCChHHHHHHHHHhhcCC
Q 002308 258 FLLVLDDVWDGDYIKWEPFYRCLKK-GLHGSKILITTRKES-------IVSMMRSTDIISIEELAEEECWVLFKRLAFFG 329 (938)
Q Consensus 258 ~LlVlDdv~~~~~~~~~~l~~~l~~-~~~gs~ilvTtr~~~-------v~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~ 329 (938)
-++++||++.... ..+...+.. ...|..||+|++.+. ....+...-++++++++.++...++.+.+...
T Consensus 87 d~lliDdi~~~~~---~~lf~l~N~~~e~g~~ilits~~~p~~l~l~~L~SRl~~gl~~~l~~pd~~~~~~~l~k~~~~~ 163 (214)
T PRK06620 87 NAFIIEDIENWQE---PALLHIFNIINEKQKYLLLTSSDKSRNFTLPDLSSRIKSVLSILLNSPDDELIKILIFKHFSIS 163 (214)
T ss_pred CEEEEeccccchH---HHHHHHHHHHHhcCCEEEEEcCCCccccchHHHHHHHhCCceEeeCCCCHHHHHHHHHHHHHHc
Confidence 4788899963211 122222221 135668999988542 22233445589999999999888888876422
Q ss_pred CCCchhhHHHHHHHHHHHhcCCChhHH
Q 002308 330 RSTEECEKLEQIGQRIARKCKGLPLAA 356 (938)
Q Consensus 330 ~~~~~~~~~~~~~~~i~~~~~g~Plai 356 (938)
+-. --+++.+-|++.+.|.--.+
T Consensus 164 ~l~----l~~ev~~~L~~~~~~d~r~l 186 (214)
T PRK06620 164 SVT----ISRQIIDFLLVNLPREYSKI 186 (214)
T ss_pred CCC----CCHHHHHHHHHHccCCHHHH
Confidence 111 12345677777777655444
No 141
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.96 E-value=0.00019 Score=82.81 Aligned_cols=195 Identities=12% Similarity=0.172 Sum_probs=109.5
Q ss_pred CCceecchhhHHHHHHHHhccCcccCCCeEEEEEEccCCChHHHHHHHHhhhhhhhcccCeEEEEEeCCCCCHHHHHHHH
Q 002308 149 EEEICGRVGERNALLSMLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNHVEVKREFDKTLWVCVSETFDEFRIAKAM 228 (938)
Q Consensus 149 ~~~~vGr~~~~~~l~~~l~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i 228 (938)
-.+++|.+...+.+..++... .-.+.+.++|+.|+||||+|+.+++..--....+ ..+++.-.....|
T Consensus 15 f~~iiGq~~v~~~L~~~i~~~-----~~~hayLf~Gp~G~GKtt~A~~lak~l~c~~~~~-------~~~c~~c~~c~~i 82 (576)
T PRK14965 15 FSDLTGQEHVSRTLQNAIDTG-----RVAHAFLFTGARGVGKTSTARILAKALNCEQGLT-------AEPCNVCPPCVEI 82 (576)
T ss_pred HHHccCcHHHHHHHHHHHHcC-----CCCeEEEEECCCCCCHHHHHHHHHHhhcCCCCCC-------CCCCCccHHHHHH
Confidence 357999999999999988743 2346678999999999999999887421111000 0000000111111
Q ss_pred HHH-------hcCC-CCCCCcHHHHHHHHHHH-hcCceEEEEEecCCCCCccChhHHHHhhhCCCCCcEEEEEc-CChhh
Q 002308 229 LEA-------LTGS-TSNLNALQSLLISIDES-IAGKRFLLVLDDVWDGDYIKWEPFYRCLKKGLHGSKILITT-RKESI 298 (938)
Q Consensus 229 ~~~-------l~~~-~~~~~~~~~~~~~l~~~-l~~~~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTt-r~~~v 298 (938)
... +.+. .....+..++...+... ..+++-++|+|+++.......+.+...+..-...+.+|++| ....+
T Consensus 83 ~~g~~~d~~eid~~s~~~v~~ir~l~~~~~~~p~~~~~KVvIIdev~~Lt~~a~naLLk~LEepp~~~~fIl~t~~~~kl 162 (576)
T PRK14965 83 TEGRSVDVFEIDGASNTGVDDIRELRENVKYLPSRSRYKIFIIDEVHMLSTNAFNALLKTLEEPPPHVKFIFATTEPHKV 162 (576)
T ss_pred hcCCCCCeeeeeccCccCHHHHHHHHHHHHhccccCCceEEEEEChhhCCHHHHHHHHHHHHcCCCCeEEEEEeCChhhh
Confidence 000 0000 00011122222222111 12445588999998766666777888887655566665544 44444
Q ss_pred hhh-hcCCceEeCCCCChHHHHHHHHHhhcCCCCCchhhHHHHHHHHHHHhcCCCh-hHHHHH
Q 002308 299 VSM-MRSTDIISIEELAEEECWVLFKRLAFFGRSTEECEKLEQIGQRIARKCKGLP-LAAKTM 359 (938)
Q Consensus 299 ~~~-~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~P-lai~~~ 359 (938)
... ......+++.+++.++....+...+...+.... .+....|++.++|.. .|+..+
T Consensus 163 ~~tI~SRc~~~~f~~l~~~~i~~~L~~i~~~egi~i~----~~al~~la~~a~G~lr~al~~L 221 (576)
T PRK14965 163 PITILSRCQRFDFRRIPLQKIVDRLRYIADQEGISIS----DAALALVARKGDGSMRDSLSTL 221 (576)
T ss_pred hHHHHHhhhhhhcCCCCHHHHHHHHHHHHHHhCCCCC----HHHHHHHHHHcCCCHHHHHHHH
Confidence 433 234568899999999988887775533222221 233668888888865 344444
No 142
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=97.96 E-value=3.1e-05 Score=82.20 Aligned_cols=91 Identities=16% Similarity=0.115 Sum_probs=62.5
Q ss_pred CeEEEEEEccCCChHHHHHHHHhhhhhhhcccCeEEEEEeCCC--CCHHHHHHHHHHHhcCCCCCCCcHH------HHHH
Q 002308 176 GLHIISIVGMGGIGKTTLAQLACNHVEVKREFDKTLWVCVSET--FDEFRIAKAMLEALTGSTSNLNALQ------SLLI 247 (938)
Q Consensus 176 ~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~--~~~~~~~~~i~~~l~~~~~~~~~~~------~~~~ 247 (938)
....++|+|++|+|||||++.+++... ..+|+..+||.+.+. .++.++++.+...+-....+..... .+..
T Consensus 167 ~Gq~~~IvG~~g~GKTtL~~~i~~~I~-~nhfdv~v~VlLIgER~~EVtDLqrsIlg~Vvast~d~p~~~~~~va~~v~e 245 (415)
T TIGR00767 167 KGQRGLIVAPPKAGKTVLLQKIAQAIT-RNHPEVELIVLLIDERPEEVTDMQRSVKGEVVASTFDEPASRHVQVAEMVIE 245 (415)
T ss_pred CCCEEEEECCCCCChhHHHHHHHHhhc-ccCCceEEEEEEcCCCCccHHHHHHHhhceEEEecCCCChHHHHHHHHHHHH
Confidence 456899999999999999999999643 237999999998865 7889999998554432222211111 1111
Q ss_pred HHHH-HhcCceEEEEEecCCC
Q 002308 248 SIDE-SIAGKRFLLVLDDVWD 267 (938)
Q Consensus 248 ~l~~-~l~~~~~LlVlDdv~~ 267 (938)
.... .-.+++++|++|++..
T Consensus 246 ~Ae~~~~~GkdVVLlIDEitR 266 (415)
T TIGR00767 246 KAKRLVEHKKDVVILLDSITR 266 (415)
T ss_pred HHHHHHHcCCCeEEEEEChhH
Confidence 1222 2358999999999954
No 143
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=97.96 E-value=9.7e-05 Score=81.21 Aligned_cols=160 Identities=16% Similarity=0.136 Sum_probs=90.2
Q ss_pred CCCceecchhhHHHHHHHHhccCcc-------cCCCeEEEEEEccCCChHHHHHHHHhhhhhhhcccCeEEEEEeCCCCC
Q 002308 148 DEEEICGRVGERNALLSMLLCESSE-------QQKGLHIISIVGMGGIGKTTLAQLACNHVEVKREFDKTLWVCVSETFD 220 (938)
Q Consensus 148 ~~~~~vGr~~~~~~l~~~l~~~~~~-------~~~~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~ 220 (938)
..+.+.|++...+++.+.+..+-.. +-..++-|.++|++|+|||++|+++++. .... |+.++.
T Consensus 129 ~~~di~Gl~~~~~~l~~~i~~pl~~~~~~~~~g~~~p~gvLL~GppGtGKT~lAkaia~~--~~~~-----~i~v~~--- 198 (389)
T PRK03992 129 TYEDIGGLEEQIREVREAVELPLKKPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHE--TNAT-----FIRVVG--- 198 (389)
T ss_pred CHHHhCCcHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCceEEECCCCCChHHHHHHHHHH--hCCC-----EEEeeh---
Confidence 3456899999999998876432110 0134567899999999999999999984 3322 222221
Q ss_pred HHHHHHHHHHHhcCCCCCCCcHHHHHH-HHHHHhcCceEEEEEecCCCC-----------CccChhHHHHhhhC-----C
Q 002308 221 EFRIAKAMLEALTGSTSNLNALQSLLI-SIDESIAGKRFLLVLDDVWDG-----------DYIKWEPFYRCLKK-----G 283 (938)
Q Consensus 221 ~~~~~~~i~~~l~~~~~~~~~~~~~~~-~l~~~l~~~~~LlVlDdv~~~-----------~~~~~~~l~~~l~~-----~ 283 (938)
.. +.....+ ......+ .+...-...+.+|+|||++.. +......+...+.. .
T Consensus 199 -~~----l~~~~~g------~~~~~i~~~f~~a~~~~p~IlfiDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~~~ 267 (389)
T PRK03992 199 -SE----LVQKFIG------EGARLVRELFELAREKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAEMDGFDP 267 (389)
T ss_pred -HH----HhHhhcc------chHHHHHHHHHHHHhcCCeEEEEechhhhhcccccCCCCccHHHHHHHHHHHHhccccCC
Confidence 11 1111111 0111111 122222346789999998642 01111223333321 1
Q ss_pred CCCcEEEEEcCChhhhhh-h----cCCceEeCCCCChHHHHHHHHHhhcC
Q 002308 284 LHGSKILITTRKESIVSM-M----RSTDIISIEELAEEECWVLFKRLAFF 328 (938)
Q Consensus 284 ~~gs~ilvTtr~~~v~~~-~----~~~~~~~l~~L~~~~~~~lf~~~~~~ 328 (938)
..+..||.||...+.... . .-...+.+.+.+.++..++|..++.+
T Consensus 268 ~~~v~VI~aTn~~~~ld~allRpgRfd~~I~v~~P~~~~R~~Il~~~~~~ 317 (389)
T PRK03992 268 RGNVKIIAATNRIDILDPAILRPGRFDRIIEVPLPDEEGRLEILKIHTRK 317 (389)
T ss_pred CCCEEEEEecCChhhCCHHHcCCccCceEEEECCCCHHHHHHHHHHHhcc
Confidence 235567777776532222 1 12357899999999999999987643
No 144
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=97.95 E-value=0.00039 Score=79.90 Aligned_cols=193 Identities=18% Similarity=0.145 Sum_probs=109.3
Q ss_pred CCceecchhhHHHHHHHHhccCcccCCCeEEEEEEccCCChHHHHHHHHhhhhhhhcccCeEEEEEeCCCCCHHHHHHHH
Q 002308 149 EEEICGRVGERNALLSMLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNHVEVKREFDKTLWVCVSETFDEFRIAKAM 228 (938)
Q Consensus 149 ~~~~vGr~~~~~~l~~~l~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i 228 (938)
-..++|.+...+.+..++.... -.+.+.++|+.|+||||+|+.+++..--...-+ ..+++.-.....+
T Consensus 15 f~~viGq~~v~~~L~~~i~~~~-----~~hayLf~Gp~GtGKTt~Ak~lAkal~c~~~~~-------~~pC~~C~~C~~i 82 (559)
T PRK05563 15 FEDVVGQEHITKTLKNAIKQGK-----ISHAYLFSGPRGTGKTSAAKIFAKAVNCLNPPD-------GEPCNECEICKAI 82 (559)
T ss_pred HHhccCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCC-------CCCCCccHHHHHH
Confidence 3579999999999999987532 356678899999999999999887421110000 0111111111111
Q ss_pred HHHhcCC-----CCCCCcHHHHHHHHHHH----hcCceEEEEEecCCCCCccChhHHHHhhhCCCCCcEEEE-EcCChhh
Q 002308 229 LEALTGS-----TSNLNALQSLLISIDES----IAGKRFLLVLDDVWDGDYIKWEPFYRCLKKGLHGSKILI-TTRKESI 298 (938)
Q Consensus 229 ~~~l~~~-----~~~~~~~~~~~~~l~~~----l~~~~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilv-Ttr~~~v 298 (938)
....... .......++....+... ..+++-++|+|+++......+..+...+........+|+ ||....+
T Consensus 83 ~~g~~~dv~eidaas~~~vd~ir~i~~~v~~~p~~~~~kViIIDE~~~Lt~~a~naLLKtLEepp~~~ifIlatt~~~ki 162 (559)
T PRK05563 83 TNGSLMDVIEIDAASNNGVDEIRDIRDKVKYAPSEAKYKVYIIDEVHMLSTGAFNALLKTLEEPPAHVIFILATTEPHKI 162 (559)
T ss_pred hcCCCCCeEEeeccccCCHHHHHHHHHHHhhCcccCCeEEEEEECcccCCHHHHHHHHHHhcCCCCCeEEEEEeCChhhC
Confidence 1110000 00011122222111110 135566889999987665667777777765444544454 4443333
Q ss_pred hhh-hcCCceEeCCCCChHHHHHHHHHhhcCCCCCchhhHHHHHHHHHHHhcCCChhHHH
Q 002308 299 VSM-MRSTDIISIEELAEEECWVLFKRLAFFGRSTEECEKLEQIGQRIARKCKGLPLAAK 357 (938)
Q Consensus 299 ~~~-~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~ 357 (938)
... ......++..+++.++....+...+...+.... .+.+..|++.++|.+..+.
T Consensus 163 ~~tI~SRc~~~~f~~~~~~ei~~~L~~i~~~egi~i~----~~al~~ia~~s~G~~R~al 218 (559)
T PRK05563 163 PATILSRCQRFDFKRISVEDIVERLKYILDKEGIEYE----DEALRLIARAAEGGMRDAL 218 (559)
T ss_pred cHHHHhHheEEecCCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCCHHHHH
Confidence 332 234568899999999998888876643322222 2336678888888776443
No 145
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=97.95 E-value=0.00043 Score=68.31 Aligned_cols=124 Identities=19% Similarity=0.223 Sum_probs=73.4
Q ss_pred CCCCCCceecchhhHHHHHHHHhccCcccCCCeEEEEEEccCCChHHHHHHHHhhhhhhhcccCeEEEEEeCCCCCHHHH
Q 002308 145 SLIDEEEICGRVGERNALLSMLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNHVEVKREFDKTLWVCVSETFDEFRI 224 (938)
Q Consensus 145 ~~~~~~~~vGr~~~~~~l~~~l~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~ 224 (938)
.++.-+.++|.+.+.+.+.+-...--. +....-+.+||..|+|||++++++.+. .... ..--|.|.+
T Consensus 22 ~~~~l~~L~Gie~Qk~~l~~Nt~~Fl~--G~pannvLL~G~rGtGKSSlVkall~~--y~~~--GLRlIev~k------- 88 (249)
T PF05673_consen 22 DPIRLDDLIGIERQKEALIENTEQFLQ--GLPANNVLLWGARGTGKSSLVKALLNE--YADQ--GLRLIEVSK------- 88 (249)
T ss_pred CCCCHHHhcCHHHHHHHHHHHHHHHHc--CCCCcceEEecCCCCCHHHHHHHHHHH--Hhhc--CceEEEECH-------
Confidence 334456799999988887764332211 335667889999999999999999884 2221 111222222
Q ss_pred HHHHHHHhcCCCCCCCcHHHHHHHHHHHhcCceEEEEEecCCCC-CccChhHHHHhhhCC---CCCcEEEEEcCC
Q 002308 225 AKAMLEALTGSTSNLNALQSLLISIDESIAGKRFLLVLDDVWDG-DYIKWEPFYRCLKKG---LHGSKILITTRK 295 (938)
Q Consensus 225 ~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~-~~~~~~~l~~~l~~~---~~gs~ilvTtr~ 295 (938)
.+..++..+...++. ...||+|++||+.-. ....+..+.+.+..+ .|.--+|.+|-|
T Consensus 89 ------------~~L~~l~~l~~~l~~--~~~kFIlf~DDLsFe~~d~~yk~LKs~LeGgle~~P~NvliyATSN 149 (249)
T PF05673_consen 89 ------------EDLGDLPELLDLLRD--RPYKFILFCDDLSFEEGDTEYKALKSVLEGGLEARPDNVLIYATSN 149 (249)
T ss_pred ------------HHhccHHHHHHHHhc--CCCCEEEEecCCCCCCCcHHHHHHHHHhcCccccCCCcEEEEEecc
Confidence 122334444444431 357999999998532 234567777777653 233334444444
No 146
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=97.94 E-value=0.00042 Score=77.28 Aligned_cols=159 Identities=18% Similarity=0.200 Sum_probs=93.0
Q ss_pred eEEEEEEccCCChHHHHHHHHhhhhhhhccc--CeEEEEEeCCCCCHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHhc
Q 002308 177 LHIISIVGMGGIGKTTLAQLACNHVEVKREF--DKTLWVCVSETFDEFRIAKAMLEALTGSTSNLNALQSLLISIDESIA 254 (938)
Q Consensus 177 ~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f--~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~ 254 (938)
...+.|+|+.|+|||+|++++++.. .... ..++|+++ .++...+...+... ..+. +.+.++
T Consensus 136 ~n~l~l~G~~G~GKThL~~ai~~~l--~~~~~~~~v~yi~~------~~~~~~~~~~~~~~-----~~~~----~~~~~~ 198 (405)
T TIGR00362 136 YNPLFIYGGVGLGKTHLLHAIGNEI--LENNPNAKVVYVSS------EKFTNDFVNALRNN-----KMEE----FKEKYR 198 (405)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHH--HHhCCCCcEEEEEH------HHHHHHHHHHHHcC-----CHHH----HHHHHH
Confidence 4568999999999999999999953 3322 24556643 33444555554321 1222 222333
Q ss_pred CceEEEEEecCCCCCccC-h-hHHHHhhhCC-CCCcEEEEEcCCh-h--------hhhhhcCCceEeCCCCChHHHHHHH
Q 002308 255 GKRFLLVLDDVWDGDYIK-W-EPFYRCLKKG-LHGSKILITTRKE-S--------IVSMMRSTDIISIEELAEEECWVLF 322 (938)
Q Consensus 255 ~~~~LlVlDdv~~~~~~~-~-~~l~~~l~~~-~~gs~ilvTtr~~-~--------v~~~~~~~~~~~l~~L~~~~~~~lf 322 (938)
+ .-+|||||++...... + +.+...+... ..|..+|+|+... . +...+.....+.+.+.+.++..+++
T Consensus 199 ~-~dlLiiDDi~~l~~~~~~~~~l~~~~n~~~~~~~~iiits~~~p~~l~~l~~~l~SRl~~g~~v~i~~pd~~~r~~il 277 (405)
T TIGR00362 199 S-VDLLLIDDIQFLAGKERTQEEFFHTFNALHENGKQIVLTSDRPPKELPGLEERLRSRFEWGLVVDIEPPDLETRLAIL 277 (405)
T ss_pred h-CCEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCCEEEecCCCHHHHhhhhhhhhhhccCCeEEEeCCCCHHHHHHHH
Confidence 2 2388899997532111 1 2233333321 2345688877642 2 1112233357899999999999999
Q ss_pred HHhhcCCCCCchhhHHHHHHHHHHHhcCCChhHHH
Q 002308 323 KRLAFFGRSTEECEKLEQIGQRIARKCKGLPLAAK 357 (938)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~ 357 (938)
...+....... -+++...|++.+.|..-.+.
T Consensus 278 ~~~~~~~~~~l----~~e~l~~ia~~~~~~~r~l~ 308 (405)
T TIGR00362 278 QKKAEEEGLEL----PDEVLEFIAKNIRSNVRELE 308 (405)
T ss_pred HHHHHHcCCCC----CHHHHHHHHHhcCCCHHHHH
Confidence 99875433222 23456778888887766443
No 147
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.92 E-value=3.7e-05 Score=82.08 Aligned_cols=61 Identities=21% Similarity=0.375 Sum_probs=28.3
Q ss_pred cCCCeeEEecCCCCCCcccCccccccCCCCeeeecCCc-cccccccccCCCCccEEEcCCCCCccccc
Q 002308 566 ESTSLRALDFPSFYLPLEIPRNIEKLVHLRYLNLSDQK-IKKLPETLCELYNLEKLDISGCSDLRELP 632 (938)
Q Consensus 566 ~~~~Lr~L~L~~n~~~~~lp~~~~~l~~L~~L~L~~~~-i~~lp~~i~~l~~L~~L~l~~~~~l~~lp 632 (938)
.+++++.|++++|. +..+|. + -.+|+.|.+++|. ++.+|..+ .++|+.|++++|..+..+|
T Consensus 50 ~~~~l~~L~Is~c~-L~sLP~-L--P~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~sLP 111 (426)
T PRK15386 50 EARASGRLYIKDCD-IESLPV-L--PNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEISGLP 111 (426)
T ss_pred HhcCCCEEEeCCCC-CcccCC-C--CCCCcEEEccCCCCcccCCchh--hhhhhheEccCcccccccc
Confidence 34556666666654 444441 1 1235555555432 34444433 1345555555553344444
No 148
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=97.92 E-value=0.00074 Score=72.51 Aligned_cols=153 Identities=20% Similarity=0.199 Sum_probs=91.1
Q ss_pred CeEEEEEEccCCChHHHHHHHHhhhhhhhcccCeEEEEEeCCCCCHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHhcC
Q 002308 176 GLHIISIVGMGGIGKTTLAQLACNHVEVKREFDKTLWVCVSETFDEFRIAKAMLEALTGSTSNLNALQSLLISIDESIAG 255 (938)
Q Consensus 176 ~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~ 255 (938)
....+.|||..|.|||.|++++++. ..........++++ .+..+..++..+.. .....+++..
T Consensus 112 ~~nplfi~G~~GlGKTHLl~Aign~--~~~~~~~a~v~y~~----se~f~~~~v~a~~~---------~~~~~Fk~~y-- 174 (408)
T COG0593 112 AYNPLFIYGGVGLGKTHLLQAIGNE--ALANGPNARVVYLT----SEDFTNDFVKALRD---------NEMEKFKEKY-- 174 (408)
T ss_pred cCCcEEEECCCCCCHHHHHHHHHHH--HHhhCCCceEEecc----HHHHHHHHHHHHHh---------hhHHHHHHhh--
Confidence 5778999999999999999999994 44555433333333 23444445544432 1122344444
Q ss_pred ceEEEEEecCCCCCc-cCh-hHHHHhhhCC-CCCcEEEEEcCCh---------hhhhhhcCCceEeCCCCChHHHHHHHH
Q 002308 256 KRFLLVLDDVWDGDY-IKW-EPFYRCLKKG-LHGSKILITTRKE---------SIVSMMRSTDIISIEELAEEECWVLFK 323 (938)
Q Consensus 256 ~~~LlVlDdv~~~~~-~~~-~~l~~~l~~~-~~gs~ilvTtr~~---------~v~~~~~~~~~~~l~~L~~~~~~~lf~ 323 (938)
.-=++++||++-... ..| +.+...|..- ..|-.||+|++.. ++.......-.+++.+.+.+....++.
T Consensus 175 ~~dlllIDDiq~l~gk~~~qeefFh~FN~l~~~~kqIvltsdr~P~~l~~~~~rL~SR~~~Gl~~~I~~Pd~e~r~aiL~ 254 (408)
T COG0593 175 SLDLLLIDDIQFLAGKERTQEEFFHTFNALLENGKQIVLTSDRPPKELNGLEDRLRSRLEWGLVVEIEPPDDETRLAILR 254 (408)
T ss_pred ccCeeeechHhHhcCChhHHHHHHHHHHHHHhcCCEEEEEcCCCchhhccccHHHHHHHhceeEEeeCCCCHHHHHHHHH
Confidence 233888999965221 122 2233333331 2344799998653 334445556789999999999999999
Q ss_pred HhhcCCCCCchhhHHHHHHHHH
Q 002308 324 RLAFFGRSTEECEKLEQIGQRI 345 (938)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~i 345 (938)
+++.........+...-++..+
T Consensus 255 kka~~~~~~i~~ev~~~la~~~ 276 (408)
T COG0593 255 KKAEDRGIEIPDEVLEFLAKRL 276 (408)
T ss_pred HHHHhcCCCCCHHHHHHHHHHh
Confidence 9775444433333333334333
No 149
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.92 E-value=1.2e-05 Score=56.62 Aligned_cols=34 Identities=41% Similarity=0.617 Sum_probs=23.1
Q ss_pred CCCeeeecCCccccccccccCCCCccEEEcCCCC
Q 002308 593 HLRYLNLSDQKIKKLPETLCELYNLEKLDISGCS 626 (938)
Q Consensus 593 ~L~~L~L~~~~i~~lp~~i~~l~~L~~L~l~~~~ 626 (938)
+|++|++++|.|+.+|..+++|++|++|++++|.
T Consensus 2 ~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~ 35 (44)
T PF12799_consen 2 NLEELDLSNNQITDLPPELSNLPNLETLNLSNNP 35 (44)
T ss_dssp T-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSC
T ss_pred cceEEEccCCCCcccCchHhCCCCCCEEEecCCC
Confidence 5677777777777777667777777777777776
No 150
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=97.91 E-value=0.00032 Score=77.98 Aligned_cols=153 Identities=18% Similarity=0.160 Sum_probs=87.0
Q ss_pred eEEEEEEccCCChHHHHHHHHhhhhhhhcccCeEEEEEeCCCCCHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHhcCc
Q 002308 177 LHIISIVGMGGIGKTTLAQLACNHVEVKREFDKTLWVCVSETFDEFRIAKAMLEALTGSTSNLNALQSLLISIDESIAGK 256 (938)
Q Consensus 177 ~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~ 256 (938)
...+.|+|+.|+|||+|++++++.. ...-..+++++. ..+...+...+... .. ..+++.++ .
T Consensus 141 ~npl~L~G~~G~GKTHLl~Ai~~~l--~~~~~~v~yi~~------~~f~~~~~~~l~~~-----~~----~~f~~~~~-~ 202 (445)
T PRK12422 141 FNPIYLFGPEGSGKTHLMQAAVHAL--RESGGKILYVRS------ELFTEHLVSAIRSG-----EM----QRFRQFYR-N 202 (445)
T ss_pred CceEEEEcCCCCCHHHHHHHHHHHH--HHcCCCEEEeeH------HHHHHHHHHHHhcc-----hH----HHHHHHcc-c
Confidence 4568999999999999999999953 222234556542 34444555554321 11 12333333 3
Q ss_pred eEEEEEecCCCCCccC--hhHHHHhhhCC-CCCcEEEEEcCCh-h--------hhhhhcCCceEeCCCCChHHHHHHHHH
Q 002308 257 RFLLVLDDVWDGDYIK--WEPFYRCLKKG-LHGSKILITTRKE-S--------IVSMMRSTDIISIEELAEEECWVLFKR 324 (938)
Q Consensus 257 ~~LlVlDdv~~~~~~~--~~~l~~~l~~~-~~gs~ilvTtr~~-~--------v~~~~~~~~~~~l~~L~~~~~~~lf~~ 324 (938)
.-+|++||+....... .+.+...+... ..|..||+||... . +...+.....+++.+++.++..+++.+
T Consensus 203 ~dvLiIDDiq~l~~k~~~qeelf~l~N~l~~~~k~IIlts~~~p~~l~~l~~rL~SR~~~Gl~~~l~~pd~e~r~~iL~~ 282 (445)
T PRK12422 203 VDALFIEDIEVFSGKGATQEEFFHTFNSLHTEGKLIVISSTCAPQDLKAMEERLISRFEWGIAIPLHPLTKEGLRSFLER 282 (445)
T ss_pred CCEEEEcchhhhcCChhhHHHHHHHHHHHHHCCCcEEEecCCCHHHHhhhHHHHHhhhcCCeEEecCCCCHHHHHHHHHH
Confidence 3488889986532111 12333333211 2355688888642 1 222233346889999999999999998
Q ss_pred hhcCCCCCchhhHHHHHHHHHHHhcCC
Q 002308 325 LAFFGRSTEECEKLEQIGQRIARKCKG 351 (938)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~i~~~~~g 351 (938)
++......-. +++...|+..+.+
T Consensus 283 k~~~~~~~l~----~evl~~la~~~~~ 305 (445)
T PRK12422 283 KAEALSIRIE----ETALDFLIEALSS 305 (445)
T ss_pred HHHHcCCCCC----HHHHHHHHHhcCC
Confidence 8754322111 2334556555554
No 151
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=97.89 E-value=0.00055 Score=72.46 Aligned_cols=198 Identities=17% Similarity=0.131 Sum_probs=115.0
Q ss_pred CceecchhhHHHHHHHHhccCcccCCCeEEEEEEccCCChHHHHHHHHhhhhhh-------------hcccCeEEEEEeC
Q 002308 150 EEICGRVGERNALLSMLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNHVEV-------------KREFDKTLWVCVS 216 (938)
Q Consensus 150 ~~~vGr~~~~~~l~~~l~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~v~~~~~~-------------~~~f~~~~wv~~~ 216 (938)
..++|.+...+.+...+.... -.+...++|+.|+||+++|..+++..-- ...+.-..|+.-.
T Consensus 4 ~~iiGq~~~~~~L~~~i~~~r-----l~ha~Lf~G~~G~Gk~~~A~~~a~~llc~~~c~~c~~~~~~~~~hPDl~~i~p~ 78 (314)
T PRK07399 4 ANLIGQPLAIELLTAAIKQNR-----IAPAYLFAGPEGVGRKLAALCFIEGLLSQGSPSKNIRRRLEEGNHPDLLWVEPT 78 (314)
T ss_pred HHhCCHHHHHHHHHHHHHhCC-----CCceEEEECCCCCCHHHHHHHHHHHHcCCCCCCCcHhcccccCCCCCEEEEecc
Confidence 468999999999999987532 3578899999999999999888775211 1112233444321
Q ss_pred CCCCHHHHHHHHHHHhc--CCCCCCCcHHHHHHHHHHHh-----cCceEEEEEecCCCCCccChhHHHHhhhCCCCCcEE
Q 002308 217 ETFDEFRIAKAMLEALT--GSTSNLNALQSLLISIDESI-----AGKRFLLVLDDVWDGDYIKWEPFYRCLKKGLHGSKI 289 (938)
Q Consensus 217 ~~~~~~~~~~~i~~~l~--~~~~~~~~~~~~~~~l~~~l-----~~~~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~i 289 (938)
...+-..+-..-++..+ ........+++. +.+.+.+ .+++-++|+|+++.......+.++..+..-....-|
T Consensus 79 ~~~~g~~~~~~~~~~~~~~~~~~~~I~id~i-r~i~~~l~~~p~~~~~kVvII~~ae~m~~~aaNaLLK~LEEPp~~~fI 157 (314)
T PRK07399 79 YQHQGKLITASEAEEAGLKRKAPPQIRLEQI-REIKRFLSRPPLEAPRKVVVIEDAETMNEAAANALLKTLEEPGNGTLI 157 (314)
T ss_pred ccccccccchhhhhhccccccccccCcHHHH-HHHHHHHccCcccCCceEEEEEchhhcCHHHHHHHHHHHhCCCCCeEE
Confidence 00000000011111111 011111222332 2233332 255668999999877666677788887654433334
Q ss_pred EEEcCChhhhhh-hcCCceEeCCCCChHHHHHHHHHhhcCCCCCchhhHHHHHHHHHHHhcCCChhHHHHHH
Q 002308 290 LITTRKESIVSM-MRSTDIISIEELAEEECWVLFKRLAFFGRSTEECEKLEQIGQRIARKCKGLPLAAKTMG 360 (938)
Q Consensus 290 lvTtr~~~v~~~-~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~~~ 360 (938)
++|+....+... .+....+++.++++++..+.+........ ... ....++..++|.|..+....
T Consensus 158 Li~~~~~~Ll~TI~SRcq~i~f~~l~~~~~~~~L~~~~~~~~---~~~----~~~~l~~~a~Gs~~~al~~l 222 (314)
T PRK07399 158 LIAPSPESLLPTIVSRCQIIPFYRLSDEQLEQVLKRLGDEEI---LNI----NFPELLALAQGSPGAAIANI 222 (314)
T ss_pred EEECChHhCcHHHHhhceEEecCCCCHHHHHHHHHHhhcccc---chh----HHHHHHHHcCCCHHHHHHHH
Confidence 445444444443 34467999999999999999988642111 011 13578899999997665433
No 152
>PF14516 AAA_35: AAA-like domain
Probab=97.89 E-value=0.00087 Score=72.05 Aligned_cols=203 Identities=15% Similarity=0.146 Sum_probs=119.7
Q ss_pred CCCCceecchhhHHHHHHHHhccCcccCCCeEEEEEEccCCChHHHHHHHHhhhhhhhcccCeEEEEEeCCC-----CCH
Q 002308 147 IDEEEICGRVGERNALLSMLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNHVEVKREFDKTLWVCVSET-----FDE 221 (938)
Q Consensus 147 ~~~~~~vGr~~~~~~l~~~l~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~-----~~~ 221 (938)
.+.+.+|.|...-+++.+.+.. ....+.|.|+-.+|||+|...+.+..+. ..| .++++++..- .+.
T Consensus 8 ~~~~~Yi~R~~~e~~~~~~i~~-------~G~~~~I~apRq~GKTSll~~l~~~l~~-~~~-~~v~id~~~~~~~~~~~~ 78 (331)
T PF14516_consen 8 LDSPFYIERPPAEQECYQEIVQ-------PGSYIRIKAPRQMGKTSLLLRLLERLQQ-QGY-RCVYIDLQQLGSAIFSDL 78 (331)
T ss_pred CCCCcccCchHHHHHHHHHHhc-------CCCEEEEECcccCCHHHHHHHHHHHHHH-CCC-EEEEEEeecCCCcccCCH
Confidence 3455678898666677777753 2458999999999999999999885332 344 4557776542 245
Q ss_pred HHHHHHHHHH----hcCCCC-------CCCcHHHHHHHHHHH-hc--CceEEEEEecCCCCCc-cC-hhHHHHhhhC---
Q 002308 222 FRIAKAMLEA----LTGSTS-------NLNALQSLLISIDES-IA--GKRFLLVLDDVWDGDY-IK-WEPFYRCLKK--- 282 (938)
Q Consensus 222 ~~~~~~i~~~----l~~~~~-------~~~~~~~~~~~l~~~-l~--~~~~LlVlDdv~~~~~-~~-~~~l~~~l~~--- 282 (938)
...++.++.. +..... ...........+.+. +. +++.+|++|+++..-. .. ..++...++.
T Consensus 79 ~~f~~~~~~~i~~~L~l~~~l~~~w~~~~~~~~~~~~~~~~~ll~~~~~~lVL~iDEiD~l~~~~~~~~dF~~~LR~~~~ 158 (331)
T PF14516_consen 79 EQFLRWFCEEISRQLKLDEKLDEYWDEEIGSKISCTEYFEEYLLKQIDKPLVLFIDEIDRLFEYPQIADDFFGLLRSWYE 158 (331)
T ss_pred HHHHHHHHHHHHHHcCCChhHHHHHHHhcCChhhHHHHHHHHHHhcCCCCEEEEEechhhhccCcchHHHHHHHHHHHHH
Confidence 5555555544 433211 011122233334443 22 6899999999965321 11 1223333221
Q ss_pred CCC-----Cc-E-EEEEcCChhhhhh-----hcCCceEeCCCCChHHHHHHHHHhhcCCCCCchhhHHHHHHHHHHHhcC
Q 002308 283 GLH-----GS-K-ILITTRKESIVSM-----MRSTDIISIEELAEEECWVLFKRLAFFGRSTEECEKLEQIGQRIARKCK 350 (938)
Q Consensus 283 ~~~-----gs-~-ilvTtr~~~v~~~-----~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 350 (938)
... .. + |++.+........ ......+.|.+|+.+|...|...+-.. ...+ ..++|...+|
T Consensus 159 ~~~~~~~~~~L~li~~~~t~~~~~~~~~~SPFNIg~~i~L~~Ft~~ev~~L~~~~~~~----~~~~----~~~~l~~~tg 230 (331)
T PF14516_consen 159 QRKNNPIWQKLRLILAGSTEDYIILDINQSPFNIGQPIELPDFTPEEVQELAQRYGLE----FSQE----QLEQLMDWTG 230 (331)
T ss_pred hcccCcccceEEEEEecCcccccccCCCCCCcccccceeCCCCCHHHHHHHHHhhhcc----CCHH----HHHHHHHHHC
Confidence 111 11 1 2222211111111 122457899999999999999886421 1111 1789999999
Q ss_pred CChhHHHHHHhhhcCC
Q 002308 351 GLPLAAKTMGSLMSSK 366 (938)
Q Consensus 351 g~Plai~~~~~~l~~~ 366 (938)
|+|..+..++..+...
T Consensus 231 GhP~Lv~~~~~~l~~~ 246 (331)
T PF14516_consen 231 GHPYLVQKACYLLVEE 246 (331)
T ss_pred CCHHHHHHHHHHHHHc
Confidence 9999999999999754
No 153
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.87 E-value=1.8e-07 Score=102.66 Aligned_cols=43 Identities=16% Similarity=0.093 Sum_probs=26.5
Q ss_pred hccCCCeeEEecCCCCCCccc-CccccccCCCCeeeecCCcccc
Q 002308 564 FRESTSLRALDFPSFYLPLEI-PRNIEKLVHLRYLNLSDQKIKK 606 (938)
Q Consensus 564 ~~~~~~Lr~L~L~~n~~~~~l-p~~~~~l~~L~~L~L~~~~i~~ 606 (938)
+.-++++++|.+-...-..-. |-.|..+..||.|.|++|.+..
T Consensus 80 ~d~lqkt~~lkl~~~pa~~pt~pi~ifpF~sLr~LElrg~~L~~ 123 (1096)
T KOG1859|consen 80 LDFLQKTKVLKLLPSPARDPTEPISIFPFRSLRVLELRGCDLST 123 (1096)
T ss_pred HHHHhhheeeeecccCCCCCCCCceeccccceeeEEecCcchhh
Confidence 444455555555544311111 5567778889999999988765
No 154
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.86 E-value=8.1e-07 Score=97.63 Aligned_cols=16 Identities=31% Similarity=0.023 Sum_probs=10.4
Q ss_pred ccccceEEEEccCCCc
Q 002308 514 DEKVRHLMLIMGKEST 529 (938)
Q Consensus 514 ~~~~r~l~l~~~~~~~ 529 (938)
+..+|+|.+.+.++..
T Consensus 108 F~sLr~LElrg~~L~~ 123 (1096)
T KOG1859|consen 108 FRSLRVLELRGCDLST 123 (1096)
T ss_pred ccceeeEEecCcchhh
Confidence 4667777777666553
No 155
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.82 E-value=5.1e-06 Score=81.90 Aligned_cols=199 Identities=18% Similarity=0.183 Sum_probs=112.5
Q ss_pred CCCcCCceEEEEecCCCCCCCCCccchHHHHhhCCCCCCCCeEEEeeecCCCCCCCchhccCCCCEEEEecCCCC-CcCC
Q 002308 720 KKKYLSRLRLEFDKKGGGGGRRKNEDDQLLLEALQPPLNLKELEIHYYGGNTVFPSWMASLTNLKSLDLCFCENC-EQLP 798 (938)
Q Consensus 720 ~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~-~~l~ 798 (938)
.++.++.++|.+|.+++ -..+...+..+|.|+.|+|+.|.+...+-.....+.+|+.|-|.+..+. ....
T Consensus 69 ~~~~v~elDL~~N~iSd---------WseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~ 139 (418)
T KOG2982|consen 69 SVTDVKELDLTGNLISD---------WSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQST 139 (418)
T ss_pred Hhhhhhhhhcccchhcc---------HHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhh
Confidence 45677778888887765 3455666777788888888888766532221124567888888776432 1222
Q ss_pred C-CCCCCccceeecccccCceEe--CcccccC--CCCCCCCC---------CCCcccccCCccceeeccccccccccccc
Q 002308 799 P-LGKLPSLEQLFISYMSSVKRV--GDEFLGV--ESDRHDSS---------SSSSVIIAFPKLKSLSIFEMEELEEWDYG 864 (938)
Q Consensus 799 ~-l~~l~~L~~L~L~~~~~l~~~--~~~~~~~--~~l~~~~~---------~~~~~~~~~~~L~~L~l~~~~~L~~~~~~ 864 (938)
. +..+|.++.|.++.|. ++.+ +++.... +.+..+.. .-+.+..-||++..+.+.+|| ++.....
T Consensus 140 s~l~~lP~vtelHmS~N~-~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~v~e~P-lK~~s~e 217 (418)
T KOG2982|consen 140 SSLDDLPKVTELHMSDNS-LRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSVFVCEGP-LKTESSE 217 (418)
T ss_pred hhhhcchhhhhhhhccch-hhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhcccchheeeecCc-ccchhhc
Confidence 2 6677777777777764 2221 1111110 01111111 122234457777777777665 2222211
Q ss_pred cccccccccccccccceecccccccccCCC--CCCCCCCCcCEEEEecCcchHHHhcCCCCCCCCcccCCCCcccC
Q 002308 865 ITRTGNTFINIMPRLSSLTINYCSKLKALP--DHIHQTTTLKELRIGECDLLEERYRKGEGEDWPKTSHIPSIHIL 938 (938)
Q Consensus 865 ~~~~~~~~~~~l~~L~~L~l~~c~~l~~lp--~~l~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~i~~i~~~~~~ 938 (938)
.. ...+|.+--|+|+.+ ++.+.. +.+..++.|..|.++.+|.....- .....+-.|+.+|++.+|
T Consensus 218 k~------se~~p~~~~LnL~~~-~idswasvD~Ln~f~~l~dlRv~~~Pl~d~l~--~~err~llIaRL~~v~vL 284 (418)
T KOG2982|consen 218 KG------SEPFPSLSCLNLGAN-NIDSWASVDALNGFPQLVDLRVSENPLSDPLR--GGERRFLLIARLTKVQVL 284 (418)
T ss_pred cc------CCCCCcchhhhhccc-ccccHHHHHHHcCCchhheeeccCCccccccc--CCcceEEEEeeccceEEe
Confidence 00 125677778888874 455432 246678888889999999865532 133344556777776553
No 156
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=97.82 E-value=0.00012 Score=67.36 Aligned_cols=97 Identities=19% Similarity=0.105 Sum_probs=54.1
Q ss_pred EEEEccCCChHHHHHHHHhhhhhhhcccCeEEEEEeCCCCCHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHhcC-ceE
Q 002308 180 ISIVGMGGIGKTTLAQLACNHVEVKREFDKTLWVCVSETFDEFRIAKAMLEALTGSTSNLNALQSLLISIDESIAG-KRF 258 (938)
Q Consensus 180 v~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~-~~~ 258 (938)
|.|+|++|+|||++|+.+++.. .. ..+.++.+.-.+ .........+...+.+.-.. ++.
T Consensus 1 ill~G~~G~GKT~l~~~la~~l--~~---~~~~i~~~~~~~---------------~~~~~~~~~i~~~~~~~~~~~~~~ 60 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYL--GF---PFIEIDGSELIS---------------SYAGDSEQKIRDFFKKAKKSAKPC 60 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHT--TS---EEEEEETTHHHT---------------SSTTHHHHHHHHHHHHHHHTSTSE
T ss_pred CEEECcCCCCeeHHHHHHHhhc--cc---cccccccccccc---------------ccccccccccccccccccccccce
Confidence 5799999999999999999953 21 234444332110 01111222233333333233 389
Q ss_pred EEEEecCCCCCccC-----------hhHHHHhhhCCC---CCcEEEEEcCCh
Q 002308 259 LLVLDDVWDGDYIK-----------WEPFYRCLKKGL---HGSKILITTRKE 296 (938)
Q Consensus 259 LlVlDdv~~~~~~~-----------~~~l~~~l~~~~---~gs~ilvTtr~~ 296 (938)
+|++||++...... ...+...+.... .+..||.||...
T Consensus 61 vl~iDe~d~l~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~~~vI~ttn~~ 112 (132)
T PF00004_consen 61 VLFIDEIDKLFPKSQPSSSSFEQRLLNQLLSLLDNPSSKNSRVIVIATTNSP 112 (132)
T ss_dssp EEEEETGGGTSHHCSTSSSHHHHHHHHHHHHHHHTTTTTSSSEEEEEEESSG
T ss_pred eeeeccchhcccccccccccccccccceeeecccccccccccceeEEeeCCh
Confidence 99999996543322 344555555432 235666777653
No 157
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=97.82 E-value=0.00044 Score=83.29 Aligned_cols=165 Identities=18% Similarity=0.207 Sum_probs=85.4
Q ss_pred CceecchhhHHHHHHHHhccCcccCCCeEEEEEEccCCChHHHHHHHHhhhhhhhcccCeEEEEEeCCCCCHHHHHHHHH
Q 002308 150 EEICGRVGERNALLSMLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNHVEVKREFDKTLWVCVSETFDEFRIAKAML 229 (938)
Q Consensus 150 ~~~vGr~~~~~~l~~~l~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 229 (938)
..++|.+...++|.+++............++.++|++|+|||++|+.+++. ....|- -+.++...+..++...
T Consensus 320 ~~~~G~~~~k~~i~~~~~~~~~~~~~~~~~lll~GppG~GKT~lAk~iA~~--l~~~~~---~i~~~~~~~~~~i~g~-- 392 (775)
T TIGR00763 320 EDHYGLKKVKERILEYLAVQKLRGKMKGPILCLVGPPGVGKTSLGKSIAKA--LNRKFV---RFSLGGVRDEAEIRGH-- 392 (775)
T ss_pred hhcCChHHHHHHHHHHHHHHHhhcCCCCceEEEECCCCCCHHHHHHHHHHH--hcCCeE---EEeCCCcccHHHHcCC--
Confidence 458899999999888765321111223457999999999999999999984 333332 2233332233222110
Q ss_pred HHhcCCCCCCCcHHHHHHHHHHHhcCceEEEEEecCCCCCccC----hhHHHHhhhC--------C-------CCCcEEE
Q 002308 230 EALTGSTSNLNALQSLLISIDESIAGKRFLLVLDDVWDGDYIK----WEPFYRCLKK--------G-------LHGSKIL 290 (938)
Q Consensus 230 ~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~~~~----~~~l~~~l~~--------~-------~~gs~il 290 (938)
..... ......+.+.+... ..++-+|+||+++...... ...+...+.+ . ..+..+|
T Consensus 393 ---~~~~~-g~~~g~i~~~l~~~-~~~~~villDEidk~~~~~~~~~~~aLl~~ld~~~~~~f~d~~~~~~~d~s~v~~I 467 (775)
T TIGR00763 393 ---RRTYV-GAMPGRIIQGLKKA-KTKNPLFLLDEIDKIGSSFRGDPASALLEVLDPEQNNAFSDHYLDVPFDLSKVIFI 467 (775)
T ss_pred ---CCcee-CCCCchHHHHHHHh-CcCCCEEEEechhhcCCccCCCHHHHHHHhcCHHhcCccccccCCceeccCCEEEE
Confidence 00000 00111222233332 2333478999986543211 1223333321 0 0223334
Q ss_pred EEcCChh-hhhh-hcCCceEeCCCCChHHHHHHHHHhh
Q 002308 291 ITTRKES-IVSM-MRSTDIISIEELAEEECWVLFKRLA 326 (938)
Q Consensus 291 vTtr~~~-v~~~-~~~~~~~~l~~L~~~~~~~lf~~~~ 326 (938)
.||.... +... ......+++.+++.++..+++..+.
T Consensus 468 ~TtN~~~~i~~~L~~R~~vi~~~~~~~~e~~~I~~~~l 505 (775)
T TIGR00763 468 ATANSIDTIPRPLLDRMEVIELSGYTEEEKLEIAKKYL 505 (775)
T ss_pred EecCCchhCCHHHhCCeeEEecCCCCHHHHHHHHHHHH
Confidence 4554332 1111 2334578999999999888887654
No 158
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=97.81 E-value=0.00072 Score=76.39 Aligned_cols=160 Identities=18% Similarity=0.188 Sum_probs=94.1
Q ss_pred CeEEEEEEccCCChHHHHHHHHhhhhhhhccc--CeEEEEEeCCCCCHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHh
Q 002308 176 GLHIISIVGMGGIGKTTLAQLACNHVEVKREF--DKTLWVCVSETFDEFRIAKAMLEALTGSTSNLNALQSLLISIDESI 253 (938)
Q Consensus 176 ~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f--~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l 253 (938)
....+.|+|++|+|||+|++++++. ....+ ..++|+++. ++..++...+... ..++ +.+.+
T Consensus 147 ~~~~l~l~G~~G~GKThL~~ai~~~--~~~~~~~~~v~yi~~~------~~~~~~~~~~~~~-----~~~~----~~~~~ 209 (450)
T PRK00149 147 AYNPLFIYGGVGLGKTHLLHAIGNY--ILEKNPNAKVVYVTSE------KFTNDFVNALRNN-----TMEE----FKEKY 209 (450)
T ss_pred cCCeEEEECCCCCCHHHHHHHHHHH--HHHhCCCCeEEEEEHH------HHHHHHHHHHHcC-----cHHH----HHHHH
Confidence 3456899999999999999999995 43333 235566543 3344444444211 1122 22333
Q ss_pred cCceEEEEEecCCCCCccC--hhHHHHhhhCC-CCCcEEEEEcCChh---------hhhhhcCCceEeCCCCChHHHHHH
Q 002308 254 AGKRFLLVLDDVWDGDYIK--WEPFYRCLKKG-LHGSKILITTRKES---------IVSMMRSTDIISIEELAEEECWVL 321 (938)
Q Consensus 254 ~~~~~LlVlDdv~~~~~~~--~~~l~~~l~~~-~~gs~ilvTtr~~~---------v~~~~~~~~~~~l~~L~~~~~~~l 321 (938)
+ +.-+|||||+....... .+.+...+... ..|..||+||.... +...+.....+++.+.+.++..++
T Consensus 210 ~-~~dlLiiDDi~~l~~~~~~~~~l~~~~n~l~~~~~~iiits~~~p~~l~~l~~~l~SRl~~gl~v~i~~pd~~~r~~i 288 (450)
T PRK00149 210 R-SVDVLLIDDIQFLAGKERTQEEFFHTFNALHEAGKQIVLTSDRPPKELPGLEERLRSRFEWGLTVDIEPPDLETRIAI 288 (450)
T ss_pred h-cCCEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCcEEEECCCCHHHHHHHHHHHHhHhcCCeeEEecCCCHHHHHHH
Confidence 3 23488999996532111 12333333221 23445888876531 122233345799999999999999
Q ss_pred HHHhhcCCCCCchhhHHHHHHHHHHHhcCCChhHHH
Q 002308 322 FKRLAFFGRSTEECEKLEQIGQRIARKCKGLPLAAK 357 (938)
Q Consensus 322 f~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~ 357 (938)
+...+...... --+++...|++.+.|..-.+.
T Consensus 289 l~~~~~~~~~~----l~~e~l~~ia~~~~~~~R~l~ 320 (450)
T PRK00149 289 LKKKAEEEGID----LPDEVLEFIAKNITSNVRELE 320 (450)
T ss_pred HHHHHHHcCCC----CCHHHHHHHHcCcCCCHHHHH
Confidence 99987542221 123457788888888766443
No 159
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=97.80 E-value=0.00051 Score=76.66 Aligned_cols=159 Identities=17% Similarity=0.167 Sum_probs=93.3
Q ss_pred eEEEEEEccCCChHHHHHHHHhhhhhhhccc-C-eEEEEEeCCCCCHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHhc
Q 002308 177 LHIISIVGMGGIGKTTLAQLACNHVEVKREF-D-KTLWVCVSETFDEFRIAKAMLEALTGSTSNLNALQSLLISIDESIA 254 (938)
Q Consensus 177 ~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f-~-~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~ 254 (938)
...+.|+|.+|+|||+|++++++. ....+ . .++|+++ .++..++...+... ..++ +.+...
T Consensus 130 ~n~l~lyG~~G~GKTHLl~ai~~~--l~~~~~~~~v~yi~~------~~f~~~~~~~~~~~-----~~~~----f~~~~~ 192 (440)
T PRK14088 130 YNPLFIYGGVGLGKTHLLQSIGNY--VVQNEPDLRVMYITS------EKFLNDLVDSMKEG-----KLNE----FREKYR 192 (440)
T ss_pred CCeEEEEcCCCCcHHHHHHHHHHH--HHHhCCCCeEEEEEH------HHHHHHHHHHHhcc-----cHHH----HHHHHH
Confidence 345999999999999999999995 33322 2 4666654 34556665555321 1222 222333
Q ss_pred CceEEEEEecCCCCC-ccCh-hHHHHhhhCC-CCCcEEEEEcC-Chhhh--------hhhcCCceEeCCCCChHHHHHHH
Q 002308 255 GKRFLLVLDDVWDGD-YIKW-EPFYRCLKKG-LHGSKILITTR-KESIV--------SMMRSTDIISIEELAEEECWVLF 322 (938)
Q Consensus 255 ~~~~LlVlDdv~~~~-~~~~-~~l~~~l~~~-~~gs~ilvTtr-~~~v~--------~~~~~~~~~~l~~L~~~~~~~lf 322 (938)
.+.-+||+||+.... ...+ +.+...+... ..|..||+||. .+.-. ..+...-.+.+.+.+.+...+++
T Consensus 193 ~~~dvLlIDDi~~l~~~~~~q~elf~~~n~l~~~~k~iIitsd~~p~~l~~l~~rL~SR~~~gl~v~i~~pd~e~r~~IL 272 (440)
T PRK14088 193 KKVDVLLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDRLVSRFQMGLVAKLEPPDEETRKKIA 272 (440)
T ss_pred hcCCEEEEechhhhcCcHHHHHHHHHHHHHHHHcCCeEEEECCCCHHHHHHHHHHHhhHHhcCceEeeCCCCHHHHHHHH
Confidence 345589999997431 1111 2333333221 23446888875 33221 12233457899999999999999
Q ss_pred HHhhcCCCCCchhhHHHHHHHHHHHhcCCChhHH
Q 002308 323 KRLAFFGRSTEECEKLEQIGQRIARKCKGLPLAA 356 (938)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai 356 (938)
.+.+....... -+++...|++.+.|.--.+
T Consensus 273 ~~~~~~~~~~l----~~ev~~~Ia~~~~~~~R~L 302 (440)
T PRK14088 273 RKMLEIEHGEL----PEEVLNFVAENVDDNLRRL 302 (440)
T ss_pred HHHHHhcCCCC----CHHHHHHHHhccccCHHHH
Confidence 98875332222 1345677888777754443
No 160
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.79 E-value=2.2e-05 Score=55.37 Aligned_cols=41 Identities=27% Similarity=0.449 Sum_probs=34.5
Q ss_pred CCeeEEecCCCCCCcccCccccccCCCCeeeecCCccccccc
Q 002308 568 TSLRALDFPSFYLPLEIPRNIEKLVHLRYLNLSDQKIKKLPE 609 (938)
Q Consensus 568 ~~Lr~L~L~~n~~~~~lp~~~~~l~~L~~L~L~~~~i~~lp~ 609 (938)
++|++|++++|. +..+|..+++|++|++|++++|.|+.++.
T Consensus 1 ~~L~~L~l~~N~-i~~l~~~l~~l~~L~~L~l~~N~i~~i~~ 41 (44)
T PF12799_consen 1 KNLEELDLSNNQ-ITDLPPELSNLPNLETLNLSNNPISDISP 41 (44)
T ss_dssp TT-SEEEETSSS--SSHGGHGTTCTTSSEEEETSSCCSBEGG
T ss_pred CcceEEEccCCC-CcccCchHhCCCCCCEEEecCCCCCCCcC
Confidence 579999999999 66788889999999999999999987654
No 161
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=97.77 E-value=0.00063 Score=72.44 Aligned_cols=158 Identities=13% Similarity=0.125 Sum_probs=95.6
Q ss_pred CeEEEEEEccCCChHHHHHHHHhhhhhhhcc-------------------cCeEEEEEeCCCCCHHHHHHHHHHHhcCCC
Q 002308 176 GLHIISIVGMGGIGKTTLAQLACNHVEVKRE-------------------FDKTLWVCVSETFDEFRIAKAMLEALTGST 236 (938)
Q Consensus 176 ~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~-------------------f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~ 236 (938)
-.+-+.++|+.|+|||++|..++...--... ..-..|+.-.. .
T Consensus 21 ~~ha~Lf~G~~G~GK~~~A~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~~~~------------------~ 82 (328)
T PRK05707 21 HPHAYLLHGPAGIGKRALAERLAAALLCEAPQGGGACGSCKGCQLLRAGSHPDNFVLEPEE------------------A 82 (328)
T ss_pred cceeeeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEeccC------------------C
Confidence 4567889999999999999998885321110 11112221100 0
Q ss_pred CCCCcHHHHHHHHHHH----hcCceEEEEEecCCCCCccChhHHHHhhhCCCCCcEEEEEcCChh-hhhh-hcCCceEeC
Q 002308 237 SNLNALQSLLISIDES----IAGKRFLLVLDDVWDGDYIKWEPFYRCLKKGLHGSKILITTRKES-IVSM-MRSTDIISI 310 (938)
Q Consensus 237 ~~~~~~~~~~~~l~~~----l~~~~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtr~~~-v~~~-~~~~~~~~l 310 (938)
.....++++...+... ..+++-++|+|+++.......+.+...+..-..++.+|+||.+.+ +... .+....+.+
T Consensus 83 ~~~i~id~iR~l~~~~~~~~~~~~~kv~iI~~a~~m~~~aaNaLLK~LEEPp~~~~fiL~t~~~~~ll~TI~SRc~~~~~ 162 (328)
T PRK05707 83 DKTIKVDQVRELVSFVVQTAQLGGRKVVLIEPAEAMNRNAANALLKSLEEPSGDTVLLLISHQPSRLLPTIKSRCQQQAC 162 (328)
T ss_pred CCCCCHHHHHHHHHHHhhccccCCCeEEEECChhhCCHHHHHHHHHHHhCCCCCeEEEEEECChhhCcHHHHhhceeeeC
Confidence 0112233333222111 123444557799988777777888888876556777777777653 3333 344678999
Q ss_pred CCCChHHHHHHHHHhhcCCCCCchhhHHHHHHHHHHHhcCCChhHHHHH
Q 002308 311 EELAEEECWVLFKRLAFFGRSTEECEKLEQIGQRIARKCKGLPLAAKTM 359 (938)
Q Consensus 311 ~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~~ 359 (938)
.+++.+++.+.+...... . . .+.+..++..++|.|.....+
T Consensus 163 ~~~~~~~~~~~L~~~~~~-~---~----~~~~~~~l~la~Gsp~~A~~l 203 (328)
T PRK05707 163 PLPSNEESLQWLQQALPE-S---D----ERERIELLTLAGGSPLRALQL 203 (328)
T ss_pred CCcCHHHHHHHHHHhccc-C---C----hHHHHHHHHHcCCCHHHHHHH
Confidence 999999999988765311 1 1 122457788999999766544
No 162
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=97.73 E-value=0.0011 Score=75.11 Aligned_cols=157 Identities=13% Similarity=0.152 Sum_probs=92.3
Q ss_pred EEEEEEccCCChHHHHHHHHhhhhhhhccc--CeEEEEEeCCCCCHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHhcC
Q 002308 178 HIISIVGMGGIGKTTLAQLACNHVEVKREF--DKTLWVCVSETFDEFRIAKAMLEALTGSTSNLNALQSLLISIDESIAG 255 (938)
Q Consensus 178 ~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f--~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~ 255 (938)
..+.|+|..|+|||.|++++++. ....+ ..++|++. .++..++...+... ..+ .+++.+..
T Consensus 315 NpL~LyG~sGsGKTHLL~AIa~~--a~~~~~g~~V~Yita------eef~~el~~al~~~-----~~~----~f~~~y~~ 377 (617)
T PRK14086 315 NPLFIYGESGLGKTHLLHAIGHY--ARRLYPGTRVRYVSS------EEFTNEFINSIRDG-----KGD----SFRRRYRE 377 (617)
T ss_pred CcEEEECCCCCCHHHHHHHHHHH--HHHhCCCCeEEEeeH------HHHHHHHHHHHHhc-----cHH----HHHHHhhc
Confidence 45899999999999999999995 33222 24556653 33444444443211 111 22233332
Q ss_pred ceEEEEEecCCCCCc-cChh-HHHHhhhCC-CCCcEEEEEcCCh---------hhhhhhcCCceEeCCCCChHHHHHHHH
Q 002308 256 KRFLLVLDDVWDGDY-IKWE-PFYRCLKKG-LHGSKILITTRKE---------SIVSMMRSTDIISIEELAEEECWVLFK 323 (938)
Q Consensus 256 ~~~LlVlDdv~~~~~-~~~~-~l~~~l~~~-~~gs~ilvTtr~~---------~v~~~~~~~~~~~l~~L~~~~~~~lf~ 323 (938)
-=+|||||+..... ..|. .+...+... ..|..|||||+.. .+...+...-.++|.+.+.+...+++.
T Consensus 378 -~DLLlIDDIq~l~gke~tqeeLF~l~N~l~e~gk~IIITSd~~P~eL~~l~~rL~SRf~~GLvv~I~~PD~EtR~aIL~ 456 (617)
T PRK14086 378 -MDILLVDDIQFLEDKESTQEEFFHTFNTLHNANKQIVLSSDRPPKQLVTLEDRLRNRFEWGLITDVQPPELETRIAILR 456 (617)
T ss_pred -CCEEEEehhccccCCHHHHHHHHHHHHHHHhcCCCEEEecCCChHhhhhccHHHHhhhhcCceEEcCCCCHHHHHHHHH
Confidence 24788999965422 2232 233333322 2355688888763 233334456689999999999999999
Q ss_pred HhhcCCCCCchhhHHHHHHHHHHHhcCCChhHH
Q 002308 324 RLAFFGRSTEECEKLEQIGQRIARKCKGLPLAA 356 (938)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai 356 (938)
+++........ +++.+-|++.+.+..-.+
T Consensus 457 kka~~r~l~l~----~eVi~yLa~r~~rnvR~L 485 (617)
T PRK14086 457 KKAVQEQLNAP----PEVLEFIASRISRNIREL 485 (617)
T ss_pred HHHHhcCCCCC----HHHHHHHHHhccCCHHHH
Confidence 98754332222 344666766666554333
No 163
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=97.73 E-value=0.00052 Score=76.39 Aligned_cols=165 Identities=19% Similarity=0.262 Sum_probs=91.7
Q ss_pred CCceecchhhHHHHHHHHhccCcccCCCeEEEEEEccCCChHHHHHHHHhhhhhhhcccCeEEEEEeCCCCCHHHHHHHH
Q 002308 149 EEEICGRVGERNALLSMLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNHVEVKREFDKTLWVCVSETFDEFRIAKAM 228 (938)
Q Consensus 149 ~~~~vGr~~~~~~l~~~l~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i 228 (938)
++..+|.++..++|.+.+.-..-.+..+.++++.+|++|||||++|+.+++ .....| +-++|+.-.|+.+|-
T Consensus 410 deDHYgm~dVKeRILEfiAV~kLrgs~qGkIlCf~GPPGVGKTSI~kSIA~--ALnRkF---fRfSvGG~tDvAeIk--- 481 (906)
T KOG2004|consen 410 DEDHYGMEDVKERILEFIAVGKLRGSVQGKILCFVGPPGVGKTSIAKSIAR--ALNRKF---FRFSVGGMTDVAEIK--- 481 (906)
T ss_pred cccccchHHHHHHHHHHHHHHhhcccCCCcEEEEeCCCCCCcccHHHHHHH--HhCCce---EEEeccccccHHhhc---
Confidence 456899999999999998754433355779999999999999999999998 444445 234566655554431
Q ss_pred HHHhcCCCCCCCcH-HHHHHHHHHHhcCceEEEEEecCCCCC---ccC-hhHHHHhhhCCC-------------CCcEEE
Q 002308 229 LEALTGSTSNLNAL-QSLLISIDESIAGKRFLLVLDDVWDGD---YIK-WEPFYRCLKKGL-------------HGSKIL 290 (938)
Q Consensus 229 ~~~l~~~~~~~~~~-~~~~~~l~~~l~~~~~LlVlDdv~~~~---~~~-~~~l~~~l~~~~-------------~gs~il 290 (938)
+....-.... ..+++.++ ..+..+-|+.+|.|+... +.+ -..++..+.+.. -=|+|+
T Consensus 482 ----GHRRTYVGAMPGkiIq~LK-~v~t~NPliLiDEvDKlG~g~qGDPasALLElLDPEQNanFlDHYLdVp~DLSkVL 556 (906)
T KOG2004|consen 482 ----GHRRTYVGAMPGKIIQCLK-KVKTENPLILIDEVDKLGSGHQGDPASALLELLDPEQNANFLDHYLDVPVDLSKVL 556 (906)
T ss_pred ----ccceeeeccCChHHHHHHH-hhCCCCceEEeehhhhhCCCCCCChHHHHHHhcChhhccchhhhccccccchhheE
Confidence 1000001011 11222222 224456788899985321 011 112333332211 125555
Q ss_pred -EEcCCh-h-hh-hhhcCCceEeCCCCChHHHHHHHHHhh
Q 002308 291 -ITTRKE-S-IV-SMMRSTDIISIEELAEEECWVLFKRLA 326 (938)
Q Consensus 291 -vTtr~~-~-v~-~~~~~~~~~~l~~L~~~~~~~lf~~~~ 326 (938)
|.|-|. + +. ........|++.+-..+|-..+-.++.
T Consensus 557 FicTAN~idtIP~pLlDRMEvIelsGYv~eEKv~IA~~yL 596 (906)
T KOG2004|consen 557 FICTANVIDTIPPPLLDRMEVIELSGYVAEEKVKIAERYL 596 (906)
T ss_pred EEEeccccccCChhhhhhhheeeccCccHHHHHHHHHHhh
Confidence 333321 0 00 011234577778877777777666654
No 164
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=97.71 E-value=0.00044 Score=82.33 Aligned_cols=166 Identities=19% Similarity=0.223 Sum_probs=90.5
Q ss_pred CCceecchhhHHHHHHHHhccCcccCCCeEEEEEEccCCChHHHHHHHHhhhhhhhcccCeEEEEEeCCCCCHHHHHHHH
Q 002308 149 EEEICGRVGERNALLSMLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNHVEVKREFDKTLWVCVSETFDEFRIAKAM 228 (938)
Q Consensus 149 ~~~~vGr~~~~~~l~~~l~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i 228 (938)
+...+|.++..++|.+++............++.++|++|+||||+|+.++.. ....|- -+..+...+...+...-
T Consensus 321 ~~~~~g~~~vK~~i~~~l~~~~~~~~~~g~~i~l~GppG~GKTtl~~~ia~~--l~~~~~---~i~~~~~~d~~~i~g~~ 395 (784)
T PRK10787 321 DTDHYGLERVKDRILEYLAVQSRVNKIKGPILCLVGPPGVGKTSLGQSIAKA--TGRKYV---RMALGGVRDEAEIRGHR 395 (784)
T ss_pred hhhccCHHHHHHHHHHHHHHHHhcccCCCceEEEECCCCCCHHHHHHHHHHH--hCCCEE---EEEcCCCCCHHHhccch
Confidence 3458999999999998887432111224568999999999999999999873 333332 23334333332221111
Q ss_pred HHHhcCCCCCCCcHHHHHHHHHHHhcCceEEEEEecCCCCCccC----hhHHHHhhhCCC---------------CCcEE
Q 002308 229 LEALTGSTSNLNALQSLLISIDESIAGKRFLLVLDDVWDGDYIK----WEPFYRCLKKGL---------------HGSKI 289 (938)
Q Consensus 229 ~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~~~~----~~~l~~~l~~~~---------------~gs~i 289 (938)
.. ..+ ... ....+.+.. .....-+++||.++...... ...+...+.+.. ...-+
T Consensus 396 ~~-~~g----~~~-G~~~~~l~~-~~~~~~villDEidk~~~~~~g~~~~aLlevld~~~~~~~~d~~~~~~~dls~v~~ 468 (784)
T PRK10787 396 RT-YIG----SMP-GKLIQKMAK-VGVKNPLFLLDEIDKMSSDMRGDPASALLEVLDPEQNVAFSDHYLEVDYDLSDVMF 468 (784)
T ss_pred hc-cCC----CCC-cHHHHHHHh-cCCCCCEEEEEChhhcccccCCCHHHHHHHHhccccEEEEecccccccccCCceEE
Confidence 00 000 011 112222322 12234578999996543221 234454443311 23333
Q ss_pred EEEcCChhhhhh-hcCCceEeCCCCChHHHHHHHHHhh
Q 002308 290 LITTRKESIVSM-MRSTDIISIEELAEEECWVLFKRLA 326 (938)
Q Consensus 290 lvTtr~~~v~~~-~~~~~~~~l~~L~~~~~~~lf~~~~ 326 (938)
|.|+....+... .+...++++.+++.++-.++..++.
T Consensus 469 i~TaN~~~i~~aLl~R~~ii~~~~~t~eek~~Ia~~~L 506 (784)
T PRK10787 469 VATSNSMNIPAPLLDRMEVIRLSGYTEDEKLNIAKRHL 506 (784)
T ss_pred EEcCCCCCCCHHHhcceeeeecCCCCHHHHHHHHHHhh
Confidence 444443322222 2334688999999999988888765
No 165
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=97.70 E-value=0.0004 Score=83.18 Aligned_cols=155 Identities=18% Similarity=0.202 Sum_probs=86.2
Q ss_pred CceecchhhHHHHHHHHhccCcccCCCeEEEEEEccCCChHHHHHHHHhhhhhhh---ccc-CeEEEEEeCCCCCHHHHH
Q 002308 150 EEICGRVGERNALLSMLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNHVEVK---REF-DKTLWVCVSETFDEFRIA 225 (938)
Q Consensus 150 ~~~vGr~~~~~~l~~~l~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~v~~~~~~~---~~f-~~~~wv~~~~~~~~~~~~ 225 (938)
+.++||+.+++++.+.|... ...-+.++|++|+|||++|+.++...... ..+ ...+|.. . ...+
T Consensus 182 ~~~igr~~ei~~~~~~L~~~------~~~n~lL~G~pG~GKT~l~~~la~~~~~~~~p~~l~~~~~~~~-~----~~~l- 249 (731)
T TIGR02639 182 DPLIGREDELERTIQVLCRR------KKNNPLLVGEPGVGKTAIAEGLALRIAEGKVPENLKNAKIYSL-D----MGSL- 249 (731)
T ss_pred CcccCcHHHHHHHHHHHhcC------CCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCeEEEe-c----HHHH-
Confidence 46899999999999988753 23346799999999999999999852111 111 2333321 1 1111
Q ss_pred HHHHHHhcCCCCCCCcHHHHHHHHHHHh-cCceEEEEEecCCCCC---------ccChhHHHHhhhCCCCC-cEEEEEcC
Q 002308 226 KAMLEALTGSTSNLNALQSLLISIDESI-AGKRFLLVLDDVWDGD---------YIKWEPFYRCLKKGLHG-SKILITTR 294 (938)
Q Consensus 226 ~~i~~~l~~~~~~~~~~~~~~~~l~~~l-~~~~~LlVlDdv~~~~---------~~~~~~l~~~l~~~~~g-s~ilvTtr 294 (938)
... .....+.++..+.+-+.+ ..++.+|++|+++.-- ...-+.+...+. .| -++|-+|.
T Consensus 250 ---~a~----~~~~g~~e~~l~~i~~~~~~~~~~ILfiDEih~l~~~g~~~~~~~~~~~~L~~~l~---~g~i~~IgaTt 319 (731)
T TIGR02639 250 ---LAG----TKYRGDFEERLKAVVSEIEKEPNAILFIDEIHTIVGAGATSGGSMDASNLLKPALS---SGKLRCIGSTT 319 (731)
T ss_pred ---hhh----ccccchHHHHHHHHHHHHhccCCeEEEEecHHHHhccCCCCCccHHHHHHHHHHHh---CCCeEEEEecC
Confidence 100 001112333333333332 3467899999986321 111122333333 33 34555554
Q ss_pred Chhhhh------hh-cCCceEeCCCCChHHHHHHHHHhh
Q 002308 295 KESIVS------MM-RSTDIISIEELAEEECWVLFKRLA 326 (938)
Q Consensus 295 ~~~v~~------~~-~~~~~~~l~~L~~~~~~~lf~~~~ 326 (938)
.++... .. ...+.+.+.+++.++..++++...
T Consensus 320 ~~e~~~~~~~d~al~rRf~~i~v~~p~~~~~~~il~~~~ 358 (731)
T TIGR02639 320 YEEYKNHFEKDRALSRRFQKIDVGEPSIEETVKILKGLK 358 (731)
T ss_pred HHHHHHHhhhhHHHHHhCceEEeCCCCHHHHHHHHHHHH
Confidence 332211 11 224579999999999999998654
No 166
>CHL00095 clpC Clp protease ATP binding subunit
Probab=97.69 E-value=0.00041 Score=84.18 Aligned_cols=155 Identities=19% Similarity=0.202 Sum_probs=86.5
Q ss_pred CceecchhhHHHHHHHHhccCcccCCCeEEEEEEccCCChHHHHHHHHhhhhhhh---ccc-CeEEEEEeCCCCCHHHHH
Q 002308 150 EEICGRVGERNALLSMLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNHVEVK---REF-DKTLWVCVSETFDEFRIA 225 (938)
Q Consensus 150 ~~~vGr~~~~~~l~~~l~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~v~~~~~~~---~~f-~~~~wv~~~~~~~~~~~~ 225 (938)
..++||+++++++.+.|.... ..-+.++|++|+|||++|+.++...... ... ...+|.- +...+
T Consensus 179 ~~~igr~~ei~~~~~~L~r~~------~~n~lL~G~pGvGKTal~~~la~~i~~~~vp~~l~~~~i~~l-----~~~~l- 246 (821)
T CHL00095 179 DPVIGREKEIERVIQILGRRT------KNNPILIGEPGVGKTAIAEGLAQRIVNRDVPDILEDKLVITL-----DIGLL- 246 (821)
T ss_pred CCCCCcHHHHHHHHHHHcccc------cCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEe-----eHHHH-
Confidence 458999999999999997532 2345799999999999999998852111 111 2344421 11111
Q ss_pred HHHHHHhcCCCCCCCcHHHHHHHHHHH-hcCceEEEEEecCCCC-------CccChhH-HHHhhhCCCCCcEEEEEcCCh
Q 002308 226 KAMLEALTGSTSNLNALQSLLISIDES-IAGKRFLLVLDDVWDG-------DYIKWEP-FYRCLKKGLHGSKILITTRKE 296 (938)
Q Consensus 226 ~~i~~~l~~~~~~~~~~~~~~~~l~~~-l~~~~~LlVlDdv~~~-------~~~~~~~-l~~~l~~~~~gs~ilvTtr~~ 296 (938)
+.+. ....+.++....+-+. -..++.+|++|+++.- ...+... +...+.. ..-++|.+|...
T Consensus 247 ------~ag~-~~~ge~e~rl~~i~~~~~~~~~~ILfiDEih~l~~~g~~~g~~~~a~lLkp~l~r--g~l~~IgaTt~~ 317 (821)
T CHL00095 247 ------LAGT-KYRGEFEERLKRIFDEIQENNNIILVIDEVHTLIGAGAAEGAIDAANILKPALAR--GELQCIGATTLD 317 (821)
T ss_pred ------hccC-CCccHHHHHHHHHHHHHHhcCCeEEEEecHHHHhcCCCCCCcccHHHHhHHHHhC--CCcEEEEeCCHH
Confidence 1111 1112333333333222 2356899999998421 0011122 2333332 123456566555
Q ss_pred hhhhh-------hcCCceEeCCCCChHHHHHHHHHh
Q 002308 297 SIVSM-------MRSTDIISIEELAEEECWVLFKRL 325 (938)
Q Consensus 297 ~v~~~-------~~~~~~~~l~~L~~~~~~~lf~~~ 325 (938)
+.... ......+.+...+.++...+++..
T Consensus 318 ey~~~ie~D~aL~rRf~~I~v~ep~~~e~~aILr~l 353 (821)
T CHL00095 318 EYRKHIEKDPALERRFQPVYVGEPSVEETIEILFGL 353 (821)
T ss_pred HHHHHHhcCHHHHhcceEEecCCCCHHHHHHHHHHH
Confidence 43221 122457888999999988887653
No 167
>PRK08116 hypothetical protein; Validated
Probab=97.67 E-value=0.00028 Score=72.99 Aligned_cols=104 Identities=21% Similarity=0.241 Sum_probs=60.6
Q ss_pred EEEEEEccCCChHHHHHHHHhhhhhhhcccCeEEEEEeCCCCCHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHhcCce
Q 002308 178 HIISIVGMGGIGKTTLAQLACNHVEVKREFDKTLWVCVSETFDEFRIAKAMLEALTGSTSNLNALQSLLISIDESIAGKR 257 (938)
Q Consensus 178 ~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~ 257 (938)
..+.++|.+|+|||.||.++++.. ...-..++|++ ..+++..+........ .....+ +.+.+.+-.
T Consensus 115 ~gl~l~G~~GtGKThLa~aia~~l--~~~~~~v~~~~------~~~ll~~i~~~~~~~~--~~~~~~----~~~~l~~~d 180 (268)
T PRK08116 115 VGLLLWGSVGTGKTYLAACIANEL--IEKGVPVIFVN------FPQLLNRIKSTYKSSG--KEDENE----IIRSLVNAD 180 (268)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHH--HHcCCeEEEEE------HHHHHHHHHHHHhccc--cccHHH----HHHHhcCCC
Confidence 458999999999999999999953 22234456665 3345555554443211 111112 223344434
Q ss_pred EEEEEecCCCCCccChhH--HHHhhhCC-CCCcEEEEEcCCh
Q 002308 258 FLLVLDDVWDGDYIKWEP--FYRCLKKG-LHGSKILITTRKE 296 (938)
Q Consensus 258 ~LlVlDdv~~~~~~~~~~--l~~~l~~~-~~gs~ilvTtr~~ 296 (938)
||||||+......+|.. +...+... ..|..+||||...
T Consensus 181 -lLviDDlg~e~~t~~~~~~l~~iin~r~~~~~~~IiTsN~~ 221 (268)
T PRK08116 181 -LLILDDLGAERDTEWAREKVYNIIDSRYRKGLPTIVTTNLS 221 (268)
T ss_pred -EEEEecccCCCCCHHHHHHHHHHHHHHHHCCCCEEEECCCC
Confidence 89999995443344543 44434332 3556699999743
No 168
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=97.64 E-value=0.0019 Score=74.62 Aligned_cols=126 Identities=16% Similarity=0.276 Sum_probs=78.0
Q ss_pred CceecchhhHHHHHHHHhccCc---ccCCCeEEEEEEccCCChHHHHHHHHhhhhhhhcccCeEEEEEeCCCCCHHHHHH
Q 002308 150 EEICGRVGERNALLSMLLCESS---EQQKGLHIISIVGMGGIGKTTLAQLACNHVEVKREFDKTLWVCVSETFDEFRIAK 226 (938)
Q Consensus 150 ~~~vGr~~~~~~l~~~l~~~~~---~~~~~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~ 226 (938)
..++|.+..+..+.+.+..... +...+..+....|+.|||||.||+.++... + +.=+..+-++.|+... +
T Consensus 491 ~rViGQd~AV~avs~aIrraRaGL~dp~rPigsFlF~GPTGVGKTELAkaLA~~L-f-g~e~aliR~DMSEy~E-----k 563 (786)
T COG0542 491 KRVIGQDEAVEAVSDAIRRARAGLGDPNRPIGSFLFLGPTGVGKTELAKALAEAL-F-GDEQALIRIDMSEYME-----K 563 (786)
T ss_pred cceeChHHHHHHHHHHHHHHhcCCCCCCCCceEEEeeCCCcccHHHHHHHHHHHh-c-CCCccceeechHHHHH-----H
Confidence 4589999999999988875432 124566788889999999999999998731 1 1113444444443211 1
Q ss_pred HHHHHhcCCCCCCCcHHHHHHHHHHHhcCceE-EEEEecCCCCCccChhHHHHhhhCC
Q 002308 227 AMLEALTGSTSNLNALQSLLISIDESIAGKRF-LLVLDDVWDGDYIKWEPFYRCLKKG 283 (938)
Q Consensus 227 ~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~-LlVlDdv~~~~~~~~~~l~~~l~~~ 283 (938)
.-...|-+.+++=-.-++ -..+-+..+.++| +|.||++.....+.++.++..|..+
T Consensus 564 HsVSrLIGaPPGYVGyee-GG~LTEaVRr~PySViLlDEIEKAHpdV~nilLQVlDdG 620 (786)
T COG0542 564 HSVSRLIGAPPGYVGYEE-GGQLTEAVRRKPYSVILLDEIEKAHPDVFNLLLQVLDDG 620 (786)
T ss_pred HHHHHHhCCCCCCceecc-ccchhHhhhcCCCeEEEechhhhcCHHHHHHHHHHhcCC
Confidence 222233333222111111 2234445567777 8889999888777777777777765
No 169
>KOG1514 consensus Origin recognition complex, subunit 1, and related proteins [Replication, recombination and repair]
Probab=97.63 E-value=0.0019 Score=72.23 Aligned_cols=208 Identities=15% Similarity=0.105 Sum_probs=129.9
Q ss_pred CCceecchhhHHHHHHHHhccCcccCCCeEEEEEEccCCChHHHHHHHHhhhhh---hh---cccCeEEEEEeCCCCCHH
Q 002308 149 EEEICGRVGERNALLSMLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNHVE---VK---REFDKTLWVCVSETFDEF 222 (938)
Q Consensus 149 ~~~~vGr~~~~~~l~~~l~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~v~~~~~---~~---~~f~~~~wv~~~~~~~~~ 222 (938)
+..+-+|+.+..+|...+...-.+ +.....+.|.|.+|+|||..+..|.+... .+ ..|++ +.|+.-.-....
T Consensus 395 p~sLpcRe~E~~~I~~f~~~~i~~-~~~g~~mYIsGvPGtGKT~tV~~Vm~~Lq~~s~~~e~p~f~y-veINgm~l~~~~ 472 (767)
T KOG1514|consen 395 PESLPCRENEFSEIEDFLRSFISD-QGLGSCMYISGVPGTGKTATVLEVMKELQTSSAQKELPKFDY-VEINGLRLASPR 472 (767)
T ss_pred cccccchhHHHHHHHHHHHhhcCC-CCCceeEEEecCCCCCceehHHHHHHHHHHHHhhcCCCCccE-EEEcceeecCHH
Confidence 445778999999999888754432 23455899999999999999999999532 11 23443 345555666789
Q ss_pred HHHHHHHHHhcCCCCCCCcHHHHHHHHHHHhc-----CceEEEEEecCCCCCccChhHHHHhhhC-CCCCcEEEEEcCC-
Q 002308 223 RIAKAMLEALTGSTSNLNALQSLLISIDESIA-----GKRFLLVLDDVWDGDYIKWEPFYRCLKK-GLHGSKILITTRK- 295 (938)
Q Consensus 223 ~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~-----~~~~LlVlDdv~~~~~~~~~~l~~~l~~-~~~gs~ilvTtr~- 295 (938)
+++..|..++.+.. ..+......+..+.. .+..++++|+++..-...-+.+...|.+ ..++||++|-+-.
T Consensus 473 ~~Y~~I~~~lsg~~---~~~~~al~~L~~~f~~~k~~~~~~VvLiDElD~Lvtr~QdVlYn~fdWpt~~~sKLvvi~IaN 549 (767)
T KOG1514|consen 473 EIYEKIWEALSGER---VTWDAALEALNFRFTVPKPKRSTTVVLIDELDILVTRSQDVLYNIFDWPTLKNSKLVVIAIAN 549 (767)
T ss_pred HHHHHHHHhcccCc---ccHHHHHHHHHHhhccCCCCCCCEEEEeccHHHHhcccHHHHHHHhcCCcCCCCceEEEEecc
Confidence 99999999998653 223333444444333 4578999998843211123456667766 4678887654321
Q ss_pred -hhhhhh-----hc---CCceEeCCCCChHHHHHHHHHhhcCCCCCchhhHHHHHHHHHHHhcCCChhHHHHHHhh
Q 002308 296 -ESIVSM-----MR---STDIISIEELAEEECWVLFKRLAFFGRSTEECEKLEQIGQRIARKCKGLPLAAKTMGSL 362 (938)
Q Consensus 296 -~~v~~~-----~~---~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~~~~~ 362 (938)
.+.... .. .-..+...|-+.++-.++...+..+. ........+-++++++.-.|..-.|+.+.-++
T Consensus 550 TmdlPEr~l~nrvsSRlg~tRi~F~pYth~qLq~Ii~~RL~~~-~~f~~~aielvarkVAavSGDaRraldic~RA 624 (767)
T KOG1514|consen 550 TMDLPERLLMNRVSSRLGLTRICFQPYTHEQLQEIISARLKGL-DAFENKAIELVARKVAAVSGDARRALDICRRA 624 (767)
T ss_pred cccCHHHHhccchhhhccceeeecCCCCHHHHHHHHHHhhcch-hhcchhHHHHHHHHHHhccccHHHHHHHHHHH
Confidence 111111 00 12467778888888888888776443 22334445555666666666666666555444
No 170
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=97.63 E-value=0.0026 Score=71.44 Aligned_cols=166 Identities=18% Similarity=0.254 Sum_probs=95.6
Q ss_pred CCceecchhhHHHHHHHHhccCcccCCCeEEEEEEccCCChHHHHHHHHhhhhhhhcccCeEEEEEeCCCCCHHHHHHHH
Q 002308 149 EEEICGRVGERNALLSMLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNHVEVKREFDKTLWVCVSETFDEFRIAKAM 228 (938)
Q Consensus 149 ~~~~vGr~~~~~~l~~~l~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i 228 (938)
+.+.+|-++..++|.+.|.-..-...-...+++++|++|||||+|++.+++ .....|-. +.++.-.|..++--
T Consensus 322 d~dHYGLekVKeRIlEyLAV~~l~~~~kGpILcLVGPPGVGKTSLgkSIA~--al~RkfvR---~sLGGvrDEAEIRG-- 394 (782)
T COG0466 322 DKDHYGLEKVKERILEYLAVQKLTKKLKGPILCLVGPPGVGKTSLGKSIAK--ALGRKFVR---ISLGGVRDEAEIRG-- 394 (782)
T ss_pred cccccCchhHHHHHHHHHHHHHHhccCCCcEEEEECCCCCCchhHHHHHHH--HhCCCEEE---EecCccccHHHhcc--
Confidence 456899999999999998744322234558999999999999999999998 55556632 34444333333210
Q ss_pred HHHhcCCCCCCCcHHHHHHHHHHHhcCceEEEEEecCCCCCcc---C-hhHHHHhhhCCCC-------------CcEE-E
Q 002308 229 LEALTGSTSNLNALQSLLISIDESIAGKRFLLVLDDVWDGDYI---K-WEPFYRCLKKGLH-------------GSKI-L 290 (938)
Q Consensus 229 ~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~~~---~-~~~l~~~l~~~~~-------------gs~i-l 290 (938)
.....-+... ....+.++ ..+.++-+++||.++..... + -..++..|.+..+ =|.| .
T Consensus 395 ---HRRTYIGamP-GrIiQ~mk-ka~~~NPv~LLDEIDKm~ss~rGDPaSALLEVLDPEQN~~F~DhYLev~yDLS~VmF 469 (782)
T COG0466 395 ---HRRTYIGAMP-GKIIQGMK-KAGVKNPVFLLDEIDKMGSSFRGDPASALLEVLDPEQNNTFSDHYLEVPYDLSKVMF 469 (782)
T ss_pred ---ccccccccCC-hHHHHHHH-HhCCcCCeEEeechhhccCCCCCChHHHHHhhcCHhhcCchhhccccCccchhheEE
Confidence 0000001111 11222222 23456779999998542211 0 1123333332211 1333 4
Q ss_pred EEcCCh-h-hh-hhhcCCceEeCCCCChHHHHHHHHHhh
Q 002308 291 ITTRKE-S-IV-SMMRSTDIISIEELAEEECWVLFKRLA 326 (938)
Q Consensus 291 vTtr~~-~-v~-~~~~~~~~~~l~~L~~~~~~~lf~~~~ 326 (938)
|||-|. + +. ..+....++++.+-+++|-.++-.++.
T Consensus 470 iaTANsl~tIP~PLlDRMEiI~lsgYt~~EKl~IAk~~L 508 (782)
T COG0466 470 IATANSLDTIPAPLLDRMEVIRLSGYTEDEKLEIAKRHL 508 (782)
T ss_pred EeecCccccCChHHhcceeeeeecCCChHHHHHHHHHhc
Confidence 555443 1 21 223456799999999999998888775
No 171
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.62 E-value=0.00016 Score=77.40 Aligned_cols=74 Identities=24% Similarity=0.355 Sum_probs=38.0
Q ss_pred ccCCCcCCceEEEEecCCCCCCCCCccchHHHHhhCCCCCCCCeEEEeeecCCCCCCCchhccCCCCEEEEecCCCCCcC
Q 002308 718 LDKKKYLSRLRLEFDKKGGGGGRRKNEDDQLLLEALQPPLNLKELEIHYYGGNTVFPSWMASLTNLKSLDLCFCENCEQL 797 (938)
Q Consensus 718 l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~l 797 (938)
+..+.+++.|+++.|.+.. ++ .-+++|++|.+++|.-...+|..+ .++|++|++++|.....+
T Consensus 48 ~~~~~~l~~L~Is~c~L~s------------LP---~LP~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~sL 110 (426)
T PRK15386 48 IEEARASGRLYIKDCDIES------------LP---VLPNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEISGL 110 (426)
T ss_pred HHHhcCCCEEEeCCCCCcc------------cC---CCCCCCcEEEccCCCCcccCCchh--hhhhhheEccCccccccc
Confidence 4445666666666665443 22 223456666666544333355433 246666666666433333
Q ss_pred CCCCCCCccceeeccc
Q 002308 798 PPLGKLPSLEQLFISY 813 (938)
Q Consensus 798 ~~l~~l~~L~~L~L~~ 813 (938)
| ++|+.|++.+
T Consensus 111 P-----~sLe~L~L~~ 121 (426)
T PRK15386 111 P-----ESVRSLEIKG 121 (426)
T ss_pred c-----cccceEEeCC
Confidence 3 3455555543
No 172
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=97.62 E-value=0.0014 Score=73.36 Aligned_cols=166 Identities=16% Similarity=0.172 Sum_probs=90.7
Q ss_pred CceecchhhHHHHHHHHhccCc-------ccCCCeEEEEEEccCCChHHHHHHHHhhhhhhhcc-----cCeEEEEEeCC
Q 002308 150 EEICGRVGERNALLSMLLCESS-------EQQKGLHIISIVGMGGIGKTTLAQLACNHVEVKRE-----FDKTLWVCVSE 217 (938)
Q Consensus 150 ~~~vGr~~~~~~l~~~l~~~~~-------~~~~~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~-----f~~~~wv~~~~ 217 (938)
..+.|.+...+++.+.+..+-. -+-...+-+.++|++|+|||++|+++++. .... .....|+.+..
T Consensus 182 ~dIgGl~~~i~~i~~~v~lp~~~~~l~~~~gl~~p~GILLyGPPGTGKT~LAKAlA~e--L~~~i~~~~~~~~~fl~v~~ 259 (512)
T TIGR03689 182 ADIGGLDSQIEQIRDAVELPFLHPELYREYDLKPPKGVLLYGPPGCGKTLIAKAVANS--LAQRIGAETGDKSYFLNIKG 259 (512)
T ss_pred HHcCChHHHHHHHHHHHHHHhhCHHHHHhccCCCCcceEEECCCCCcHHHHHHHHHHh--hccccccccCCceeEEeccc
Confidence 4578899999888887642110 00123456899999999999999999994 3222 22344555443
Q ss_pred CCCHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHH-hcCceEEEEEecCCCCC-------ccCh-----hHHHHhhhCC-
Q 002308 218 TFDEFRIAKAMLEALTGSTSNLNALQSLLISIDES-IAGKRFLLVLDDVWDGD-------YIKW-----EPFYRCLKKG- 283 (938)
Q Consensus 218 ~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~-l~~~~~LlVlDdv~~~~-------~~~~-----~~l~~~l~~~- 283 (938)
.. ++....+. .......+....+.. -.+++.+|+||+++..- ..+. ..+...+...
T Consensus 260 ~e--------Ll~kyvGe--te~~ir~iF~~Ar~~a~~g~p~IIfIDEiD~L~~~R~~~~s~d~e~~il~~LL~~LDgl~ 329 (512)
T TIGR03689 260 PE--------LLNKYVGE--TERQIRLIFQRAREKASDGRPVIVFFDEMDSIFRTRGSGVSSDVETTVVPQLLSELDGVE 329 (512)
T ss_pred hh--------hcccccch--HHHHHHHHHHHHHHHhhcCCCceEEEehhhhhhcccCCCccchHHHHHHHHHHHHhcccc
Confidence 11 11111000 001111222222222 23578999999996421 0111 2233333321
Q ss_pred -CCCcEEEEEcCChhhhhh-h----cCCceEeCCCCChHHHHHHHHHhhc
Q 002308 284 -LHGSKILITTRKESIVSM-M----RSTDIISIEELAEEECWVLFKRLAF 327 (938)
Q Consensus 284 -~~gs~ilvTtr~~~v~~~-~----~~~~~~~l~~L~~~~~~~lf~~~~~ 327 (938)
..+..||.||...+.... + .-...+++...+.++..++|..+..
T Consensus 330 ~~~~ViVI~ATN~~d~LDpALlRpGRfD~~I~~~~Pd~e~r~~Il~~~l~ 379 (512)
T TIGR03689 330 SLDNVIVIGASNREDMIDPAILRPGRLDVKIRIERPDAEAAADIFSKYLT 379 (512)
T ss_pred cCCceEEEeccCChhhCCHhhcCccccceEEEeCCCCHHHHHHHHHHHhh
Confidence 134445666655433221 1 1134689999999999999998863
No 173
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=97.59 E-value=0.0011 Score=63.04 Aligned_cols=139 Identities=17% Similarity=0.177 Sum_probs=79.8
Q ss_pred cchhhHHHHHHHHhccCcccCCCeEEEEEEccCCChHHHHHHHHhhhhhhh------------------cccCeEEEEEe
Q 002308 154 GRVGERNALLSMLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNHVEVK------------------REFDKTLWVCV 215 (938)
Q Consensus 154 Gr~~~~~~l~~~l~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~v~~~~~~~------------------~~f~~~~wv~~ 215 (938)
|.++..+.+...+.... -...+.++|+.|+||+++|..+++..--. .......|+.-
T Consensus 1 gq~~~~~~L~~~~~~~~-----l~ha~L~~G~~g~gk~~~a~~~a~~ll~~~~~~~~c~~c~~c~~~~~~~~~d~~~~~~ 75 (162)
T PF13177_consen 1 GQEEIIELLKNLIKSGR-----LPHALLFHGPSGSGKKTLALAFARALLCSNPNEDPCGECRSCRRIEEGNHPDFIIIKP 75 (162)
T ss_dssp S-HHHHHHHHHHHHCTC-------SEEEEECSTTSSHHHHHHHHHHHHC-TT-CTT--SSSHHHHHHHTT-CTTEEEEET
T ss_pred CcHHHHHHHHHHHHcCC-----cceeEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHhccCcceEEEec
Confidence 55667777777776432 35568999999999999999988852111 11223334432
Q ss_pred CCC---CCHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHhcCceEEEEEecCCCCCccChhHHHHhhhCCCCCcEEEEE
Q 002308 216 SET---FDEFRIAKAMLEALTGSTSNLNALQSLLISIDESIAGKRFLLVLDDVWDGDYIKWEPFYRCLKKGLHGSKILIT 292 (938)
Q Consensus 216 ~~~---~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvT 292 (938)
... ..++++. ++...+.... ..+++=++|+||++......+..++..+..-..++.+|++
T Consensus 76 ~~~~~~i~i~~ir-~i~~~~~~~~----------------~~~~~KviiI~~ad~l~~~a~NaLLK~LEepp~~~~fiL~ 138 (162)
T PF13177_consen 76 DKKKKSIKIDQIR-EIIEFLSLSP----------------SEGKYKVIIIDEADKLTEEAQNALLKTLEEPPENTYFILI 138 (162)
T ss_dssp TTSSSSBSHHHHH-HHHHHCTSS-----------------TTSSSEEEEEETGGGS-HHHHHHHHHHHHSTTTTEEEEEE
T ss_pred ccccchhhHHHHH-HHHHHHHHHH----------------hcCCceEEEeehHhhhhHHHHHHHHHHhcCCCCCEEEEEE
Confidence 221 2222221 2222222111 1235568999999988778888899999887788888888
Q ss_pred cCChh-hhhh-hcCCceEeCCCCC
Q 002308 293 TRKES-IVSM-MRSTDIISIEELA 314 (938)
Q Consensus 293 tr~~~-v~~~-~~~~~~~~l~~L~ 314 (938)
|++.+ +... ......+.+.+++
T Consensus 139 t~~~~~il~TI~SRc~~i~~~~ls 162 (162)
T PF13177_consen 139 TNNPSKILPTIRSRCQVIRFRPLS 162 (162)
T ss_dssp ES-GGGS-HHHHTTSEEEEE----
T ss_pred ECChHHChHHHHhhceEEecCCCC
Confidence 88764 3332 3445566666653
No 174
>PRK10536 hypothetical protein; Provisional
Probab=97.59 E-value=0.0014 Score=65.66 Aligned_cols=138 Identities=14% Similarity=0.184 Sum_probs=77.3
Q ss_pred CCceecchhhHHHHHHHHhccCcccCCCeEEEEEEccCCChHHHHHHHHhhhhhhhcccCeEEEEEe----CC-----CC
Q 002308 149 EEEICGRVGERNALLSMLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNHVEVKREFDKTLWVCV----SE-----TF 219 (938)
Q Consensus 149 ~~~~vGr~~~~~~l~~~l~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~----~~-----~~ 219 (938)
...+.+|......+..++.. ..+|.+.|++|+|||+||.++..+.-..+.|+.++.+.- ++ +-
T Consensus 54 ~~~i~p~n~~Q~~~l~al~~--------~~lV~i~G~aGTGKT~La~a~a~~~l~~~~~~kIiI~RP~v~~ge~LGfLPG 125 (262)
T PRK10536 54 TSPILARNEAQAHYLKAIES--------KQLIFATGEAGCGKTWISAAKAAEALIHKDVDRIIVTRPVLQADEDLGFLPG 125 (262)
T ss_pred CccccCCCHHHHHHHHHHhc--------CCeEEEECCCCCCHHHHHHHHHHHHHhcCCeeEEEEeCCCCCchhhhCcCCC
Confidence 34567788888888888853 248999999999999999998885333444554443321 11 11
Q ss_pred CHHH----HHHHHHHHhcCCCCCCCcHHHHHH----HH----HHHhcCceE---EEEEecCCCCCccChhHHHHhhhCCC
Q 002308 220 DEFR----IAKAMLEALTGSTSNLNALQSLLI----SI----DESIAGKRF---LLVLDDVWDGDYIKWEPFYRCLKKGL 284 (938)
Q Consensus 220 ~~~~----~~~~i~~~l~~~~~~~~~~~~~~~----~l----~~~l~~~~~---LlVlDdv~~~~~~~~~~l~~~l~~~~ 284 (938)
+..+ .+.-+...+..-. +....+.... .+ -.+++|+.+ +||+|++.+.+. ..+...+-..+
T Consensus 126 ~~~eK~~p~~~pi~D~L~~~~-~~~~~~~~~~~~~~~Iei~~l~ymRGrtl~~~~vIvDEaqn~~~---~~~k~~ltR~g 201 (262)
T PRK10536 126 DIAEKFAPYFRPVYDVLVRRL-GASFMQYCLRPEIGKVEIAPFAYMRGRTFENAVVILDEAQNVTA---AQMKMFLTRLG 201 (262)
T ss_pred CHHHHHHHHHHHHHHHHHHHh-ChHHHHHHHHhccCcEEEecHHHhcCCcccCCEEEEechhcCCH---HHHHHHHhhcC
Confidence 2211 1122222221100 0001111100 00 124566654 999999987654 34444455556
Q ss_pred CCcEEEEEcCChhh
Q 002308 285 HGSKILITTRKESI 298 (938)
Q Consensus 285 ~gs~ilvTtr~~~v 298 (938)
.+|++|+|--..++
T Consensus 202 ~~sk~v~~GD~~Qi 215 (262)
T PRK10536 202 ENVTVIVNGDITQC 215 (262)
T ss_pred CCCEEEEeCChhhc
Confidence 89999998765433
No 175
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.59 E-value=0.00049 Score=79.04 Aligned_cols=53 Identities=19% Similarity=0.233 Sum_probs=42.0
Q ss_pred CCCCceecchhhHHHHHHHHhccCcccCCCeEEEEEEccCCChHHHHHHHHhhh
Q 002308 147 IDEEEICGRVGERNALLSMLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNH 200 (938)
Q Consensus 147 ~~~~~~vGr~~~~~~l~~~l~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~v~~~ 200 (938)
....+++|.+..++++..++....-+ ....+++.|+|++|+||||+++.++..
T Consensus 81 ~~ldel~~~~~ki~~l~~~l~~~~~~-~~~~~illL~GP~GsGKTTl~~~la~~ 133 (637)
T TIGR00602 81 ETQHELAVHKKKIEEVETWLKAQVLE-NAPKRILLITGPSGCGKSTTIKILSKE 133 (637)
T ss_pred CCHHHhcCcHHHHHHHHHHHHhcccc-cCCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 34467999999999999998754321 234468999999999999999999884
No 176
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=97.58 E-value=0.0043 Score=61.09 Aligned_cols=183 Identities=19% Similarity=0.240 Sum_probs=106.8
Q ss_pred CCeEEEEEEccCCChHHHHHHHHhhhhhhhcccCeEEEEEe-CCCCCHHHHHHHHHHHhcCCCCCC--CcHHHHHHHHHH
Q 002308 175 KGLHIISIVGMGGIGKTTLAQLACNHVEVKREFDKTLWVCV-SETFDEFRIAKAMLEALTGSTSNL--NALQSLLISIDE 251 (938)
Q Consensus 175 ~~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~-~~~~~~~~~~~~i~~~l~~~~~~~--~~~~~~~~~l~~ 251 (938)
.+.+++.++|.-|.|||.+++..... ..+ +.++-+.+ ....+...+...+...+...+... ...++....+..
T Consensus 49 d~qg~~~vtGevGsGKTv~~Ral~~s--~~~--d~~~~v~i~~~~~s~~~~~~ai~~~l~~~p~~~~~~~~e~~~~~L~a 124 (269)
T COG3267 49 DGQGILAVTGEVGSGKTVLRRALLAS--LNE--DQVAVVVIDKPTLSDATLLEAIVADLESQPKVNVNAVLEQIDRELAA 124 (269)
T ss_pred cCCceEEEEecCCCchhHHHHHHHHh--cCC--CceEEEEecCcchhHHHHHHHHHHHhccCccchhHHHHHHHHHHHHH
Confidence 35679999999999999999944331 111 22222333 345566778888888887622111 122333333443
Q ss_pred Hh-cCce-EEEEEecCCCCCccChhHHHHhhhCCCCCc---EEEEEcCChh-------hhhhh-cCCce-EeCCCCChHH
Q 002308 252 SI-AGKR-FLLVLDDVWDGDYIKWEPFYRCLKKGLHGS---KILITTRKES-------IVSMM-RSTDI-ISIEELAEEE 317 (938)
Q Consensus 252 ~l-~~~~-~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs---~ilvTtr~~~-------v~~~~-~~~~~-~~l~~L~~~~ 317 (938)
.. +++| ..+++|+.........+.+..+......++ +|+..-..+- +.... ..... |++.|++.++
T Consensus 125 l~~~g~r~v~l~vdEah~L~~~~le~Lrll~nl~~~~~~~l~ivL~Gqp~L~~~lr~~~l~e~~~R~~ir~~l~P~~~~~ 204 (269)
T COG3267 125 LVKKGKRPVVLMVDEAHDLNDSALEALRLLTNLEEDSSKLLSIVLIGQPKLRPRLRLPVLRELEQRIDIRIELPPLTEAE 204 (269)
T ss_pred HHHhCCCCeEEeehhHhhhChhHHHHHHHHHhhcccccCceeeeecCCcccchhhchHHHHhhhheEEEEEecCCcChHH
Confidence 33 4677 999999997765445555444432221121 2444333210 11111 11234 8999999999
Q ss_pred HHHHHHHhhcCCCCCchhhHHHHHHHHHHHhcCCChhHHHHHHhh
Q 002308 318 CWVLFKRLAFFGRSTEECEKLEQIGQRIARKCKGLPLAAKTMGSL 362 (938)
Q Consensus 318 ~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~~~~~ 362 (938)
...+++.+..+... ..+-...+....|..+..|.|.+|..++..
T Consensus 205 t~~yl~~~Le~a~~-~~~l~~~~a~~~i~~~sqg~P~lin~~~~~ 248 (269)
T COG3267 205 TGLYLRHRLEGAGL-PEPLFSDDALLLIHEASQGIPRLINNLATL 248 (269)
T ss_pred HHHHHHHHHhccCC-CcccCChhHHHHHHHHhccchHHHHHHHHH
Confidence 99998887655432 222222344668889999999999888753
No 177
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=97.57 E-value=0.00038 Score=64.99 Aligned_cols=88 Identities=20% Similarity=0.132 Sum_probs=47.5
Q ss_pred EEEEEEccCCChHHHHHHHHhhhhhhhcccCeEEEEEeCCCCCHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHhcCc-
Q 002308 178 HIISIVGMGGIGKTTLAQLACNHVEVKREFDKTLWVCVSETFDEFRIAKAMLEALTGSTSNLNALQSLLISIDESIAGK- 256 (938)
Q Consensus 178 ~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~- 256 (938)
..+.|+|++|+||||+++.++.. .......++++..+........... ........ ...........+.+.....
T Consensus 3 ~~~~l~G~~G~GKTtl~~~l~~~--~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 78 (148)
T smart00382 3 EVILIVGPPGSGKTTLARALARE--LGPPGGGVIYIDGEDILEEVLDQLL-LIIVGGKK-ASGSGELRLRLALALARKLK 78 (148)
T ss_pred CEEEEECCCCCcHHHHHHHHHhc--cCCCCCCEEEECCEEccccCHHHHH-hhhhhccC-CCCCHHHHHHHHHHHHHhcC
Confidence 57899999999999999999884 2222224566655543322222211 11111111 1122222223333333333
Q ss_pred eEEEEEecCCCCC
Q 002308 257 RFLLVLDDVWDGD 269 (938)
Q Consensus 257 ~~LlVlDdv~~~~ 269 (938)
..++++|+++...
T Consensus 79 ~~viiiDei~~~~ 91 (148)
T smart00382 79 PDVLILDEITSLL 91 (148)
T ss_pred CCEEEEECCcccC
Confidence 4899999997754
No 178
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.56 E-value=1.1e-05 Score=70.17 Aligned_cols=91 Identities=15% Similarity=0.235 Sum_probs=60.0
Q ss_pred ccCceeEEeccCCCCCCCCchhhHHHHHhccCCCeeEEecCCCCCCcccCccccccCCCCeeeecCCccccccccccCCC
Q 002308 536 RAKRIRSLLIEWPEFGHSSLNGEILEELFRESTSLRALDFPSFYLPLEIPRNIEKLVHLRYLNLSDQKIKKLPETLCELY 615 (938)
Q Consensus 536 ~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~n~~~~~lp~~~~~l~~L~~L~L~~~~i~~lp~~i~~l~ 615 (938)
+..+|...++++|.+ .++++.+-..++.++.|+|++|. +..+|..+..++.|+.|+++.|.+...|..|..|.
T Consensus 51 ~~~el~~i~ls~N~f------k~fp~kft~kf~t~t~lNl~~ne-isdvPeE~Aam~aLr~lNl~~N~l~~~p~vi~~L~ 123 (177)
T KOG4579|consen 51 KGYELTKISLSDNGF------KKFPKKFTIKFPTATTLNLANNE-ISDVPEELAAMPALRSLNLRFNPLNAEPRVIAPLI 123 (177)
T ss_pred CCceEEEEecccchh------hhCCHHHhhccchhhhhhcchhh-hhhchHHHhhhHHhhhcccccCccccchHHHHHHH
Confidence 444555666666654 44455555666677777777777 56677777777777777777777777777776677
Q ss_pred CccEEEcCCCCCccccccc
Q 002308 616 NLEKLDISGCSDLRELPKG 634 (938)
Q Consensus 616 ~L~~L~l~~~~~l~~lp~~ 634 (938)
+|-.||..+|. ...+|.+
T Consensus 124 ~l~~Lds~~na-~~eid~d 141 (177)
T KOG4579|consen 124 KLDMLDSPENA-RAEIDVD 141 (177)
T ss_pred hHHHhcCCCCc-cccCcHH
Confidence 77777777766 4445543
No 179
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=97.55 E-value=0.00063 Score=82.81 Aligned_cols=155 Identities=15% Similarity=0.165 Sum_probs=84.2
Q ss_pred CceecchhhHHHHHHHHhccCcccCCCeEEEEEEccCCChHHHHHHHHhhhhhhhcc------cCeEEE-EEeCCCCCHH
Q 002308 150 EEICGRVGERNALLSMLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNHVEVKRE------FDKTLW-VCVSETFDEF 222 (938)
Q Consensus 150 ~~~vGr~~~~~~l~~~l~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~------f~~~~w-v~~~~~~~~~ 222 (938)
+.++||+.++.+++..|... ...-+.++|++|+|||++|..++.. +... ....+| +.++
T Consensus 173 ~~~igr~~ei~~~~~~l~r~------~~~n~lL~G~pGvGKT~l~~~la~~--i~~~~~p~~l~~~~~~~l~~~------ 238 (852)
T TIGR03346 173 DPVIGRDEEIRRTIQVLSRR------TKNNPVLIGEPGVGKTAIVEGLAQR--IVNGDVPESLKNKRLLALDMG------ 238 (852)
T ss_pred CcCCCcHHHHHHHHHHHhcC------CCCceEEEcCCCCCHHHHHHHHHHH--HhccCCchhhcCCeEEEeeHH------
Confidence 45999999999999999753 2344568999999999999999884 2221 122233 2211
Q ss_pred HHHHHHHHHhcCCCCCCCcHHHHHHHHHHHh-c-CceEEEEEecCCCCC----ccChhHHHHhhhC-CCCC-cEEEEEcC
Q 002308 223 RIAKAMLEALTGSTSNLNALQSLLISIDESI-A-GKRFLLVLDDVWDGD----YIKWEPFYRCLKK-GLHG-SKILITTR 294 (938)
Q Consensus 223 ~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l-~-~~~~LlVlDdv~~~~----~~~~~~l~~~l~~-~~~g-s~ilvTtr 294 (938)
.+. .+. ....+.+.....+-+.+ . +++.+|++|+++.-. ...-......+.+ ...| -++|-+|.
T Consensus 239 ~l~-------a~~-~~~g~~e~~l~~~l~~~~~~~~~~ILfIDEih~l~~~g~~~~~~d~~~~Lk~~l~~g~i~~IgaTt 310 (852)
T TIGR03346 239 ALI-------AGA-KYRGEFEERLKAVLNEVTKSEGQIILFIDELHTLVGAGKAEGAMDAGNMLKPALARGELHCIGATT 310 (852)
T ss_pred HHh-------hcc-hhhhhHHHHHHHHHHHHHhcCCCeEEEeccHHHhhcCCCCcchhHHHHHhchhhhcCceEEEEeCc
Confidence 111 000 00112222222222222 2 468999999996421 0000111111211 1233 34555555
Q ss_pred Chhhhhh-------hcCCceEeCCCCChHHHHHHHHHhh
Q 002308 295 KESIVSM-------MRSTDIISIEELAEEECWVLFKRLA 326 (938)
Q Consensus 295 ~~~v~~~-------~~~~~~~~l~~L~~~~~~~lf~~~~ 326 (938)
..+.... ....+.+.+...+.++..+++....
T Consensus 311 ~~e~r~~~~~d~al~rRf~~i~v~~p~~~~~~~iL~~~~ 349 (852)
T TIGR03346 311 LDEYRKYIEKDAALERRFQPVFVDEPTVEDTISILRGLK 349 (852)
T ss_pred HHHHHHHhhcCHHHHhcCCEEEeCCCCHHHHHHHHHHHH
Confidence 4433211 1223568899999999999887653
No 180
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=97.55 E-value=0.0022 Score=68.85 Aligned_cols=163 Identities=9% Similarity=0.077 Sum_probs=92.6
Q ss_pred ceec-chhhHHHHHHHHhccCcccCCCeEEEEEEccCCChHHHHHHHHhhhhhhhcccCeEEEEEeCCCCCHHHHHHHHH
Q 002308 151 EICG-RVGERNALLSMLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNHVEVKREFDKTLWVCVSETFDEFRIAKAML 229 (938)
Q Consensus 151 ~~vG-r~~~~~~l~~~l~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 229 (938)
.++| .+...+.+...+... .-.+...++|+.|+||||+|..+....--....... .+..-...+.+.
T Consensus 6 ~i~~~q~~~~~~L~~~~~~~-----~l~ha~Lf~G~~G~gk~~~a~~la~~l~c~~~~~~~-------~cg~C~~c~~~~ 73 (329)
T PRK08058 6 QLTALQPVVVKMLQNSIAKN-----RLSHAYLFEGAKGTGKKATALWLAKSLFCLERNGVE-------PCGTCTNCKRID 73 (329)
T ss_pred HHHhhHHHHHHHHHHHHHcC-----CCCceEEEECCCCCCHHHHHHHHHHHHCCCCCCCCC-------CCCcCHHHHHHh
Confidence 3566 666777777777642 345777999999999999999987742111100000 000000001110
Q ss_pred HHhc------CCCCCCCcHHHHHHHHHHH----hcCceEEEEEecCCCCCccChhHHHHhhhCCCCCcEEEEEcCChh-h
Q 002308 230 EALT------GSTSNLNALQSLLISIDES----IAGKRFLLVLDDVWDGDYIKWEPFYRCLKKGLHGSKILITTRKES-I 298 (938)
Q Consensus 230 ~~l~------~~~~~~~~~~~~~~~l~~~----l~~~~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtr~~~-v 298 (938)
..-. .........+++...+... ..+.+=++|+|+++.......+.+...+..-..++.+|++|.++. +
T Consensus 74 ~~~hpD~~~i~~~~~~i~id~ir~l~~~~~~~~~~~~~kvviI~~a~~~~~~a~NaLLK~LEEPp~~~~~Il~t~~~~~l 153 (329)
T PRK08058 74 SGNHPDVHLVAPDGQSIKKDQIRYLKEEFSKSGVESNKKVYIIEHADKMTASAANSLLKFLEEPSGGTTAILLTENKHQI 153 (329)
T ss_pred cCCCCCEEEeccccccCCHHHHHHHHHHHhhCCcccCceEEEeehHhhhCHHHHHHHHHHhcCCCCCceEEEEeCChHhC
Confidence 0000 0000112223333222221 234556799999987766666778888877666777777776543 3
Q ss_pred hhh-hcCCceEeCCCCChHHHHHHHHHh
Q 002308 299 VSM-MRSTDIISIEELAEEECWVLFKRL 325 (938)
Q Consensus 299 ~~~-~~~~~~~~l~~L~~~~~~~lf~~~ 325 (938)
... .+....+++.+++.++..+.+...
T Consensus 154 l~TIrSRc~~i~~~~~~~~~~~~~L~~~ 181 (329)
T PRK08058 154 LPTILSRCQVVEFRPLPPESLIQRLQEE 181 (329)
T ss_pred cHHHHhhceeeeCCCCCHHHHHHHHHHc
Confidence 333 344678999999999998888653
No 181
>PRK10865 protein disaggregation chaperone; Provisional
Probab=97.47 E-value=0.0015 Score=79.16 Aligned_cols=45 Identities=20% Similarity=0.302 Sum_probs=38.1
Q ss_pred CceecchhhHHHHHHHHhccCcccCCCeEEEEEEccCCChHHHHHHHHhhh
Q 002308 150 EEICGRVGERNALLSMLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNH 200 (938)
Q Consensus 150 ~~~vGr~~~~~~l~~~l~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~v~~~ 200 (938)
+.++||+.++.+++..|... ...-+.++|++|+|||++|+.++..
T Consensus 178 ~~vigr~~ei~~~i~iL~r~------~~~n~lL~G~pGvGKT~l~~~la~~ 222 (857)
T PRK10865 178 DPVIGRDEEIRRTIQVLQRR------TKNNPVLIGEPGVGKTAIVEGLAQR 222 (857)
T ss_pred CcCCCCHHHHHHHHHHHhcC------CcCceEEECCCCCCHHHHHHHHHHH
Confidence 46999999999999999753 2345679999999999999999884
No 182
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=97.47 E-value=0.00051 Score=75.59 Aligned_cols=158 Identities=16% Similarity=0.138 Sum_probs=88.2
Q ss_pred CceecchhhHHHHHHHHhccCcc-------cCCCeEEEEEEccCCChHHHHHHHHhhhhhhhcccCeEEEEEeCCCCCHH
Q 002308 150 EEICGRVGERNALLSMLLCESSE-------QQKGLHIISIVGMGGIGKTTLAQLACNHVEVKREFDKTLWVCVSETFDEF 222 (938)
Q Consensus 150 ~~~vGr~~~~~~l~~~l~~~~~~-------~~~~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~ 222 (938)
..+.|.+..++++.+.+.-+-.. +-...+-+.++|++|+|||++|+.+++. ....| +.+..+.
T Consensus 183 ~DIgGl~~qi~~l~e~v~lpl~~p~~~~~~gi~~p~gVLL~GPPGTGKT~LAraIA~e--l~~~f---i~V~~se----- 252 (438)
T PTZ00361 183 ADIGGLEQQIQEIKEAVELPLTHPELYDDIGIKPPKGVILYGPPGTGKTLLAKAVANE--TSATF---LRVVGSE----- 252 (438)
T ss_pred HHhcCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHh--hCCCE---EEEecch-----
Confidence 45788999888888877422100 0124456889999999999999999983 43333 1121111
Q ss_pred HHHHHHHHHhcCCCCCCCcHHHHHHHHHHHhcCceEEEEEecCCCCC-----------ccChhHHHHh---hhC--CCCC
Q 002308 223 RIAKAMLEALTGSTSNLNALQSLLISIDESIAGKRFLLVLDDVWDGD-----------YIKWEPFYRC---LKK--GLHG 286 (938)
Q Consensus 223 ~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~-----------~~~~~~l~~~---l~~--~~~g 286 (938)
+ .....+. ....+...+.....+.+.+|+||+++... ......+... +.. ...+
T Consensus 253 -L----~~k~~Ge-----~~~~vr~lF~~A~~~~P~ILfIDEID~l~~kR~~~~sgg~~e~qr~ll~LL~~Ldg~~~~~~ 322 (438)
T PTZ00361 253 -L----IQKYLGD-----GPKLVRELFRVAEENAPSIVFIDEIDAIGTKRYDATSGGEKEIQRTMLELLNQLDGFDSRGD 322 (438)
T ss_pred -h----hhhhcch-----HHHHHHHHHHHHHhCCCcEEeHHHHHHHhccCCCCCCcccHHHHHHHHHHHHHHhhhcccCC
Confidence 1 1111100 01112222222334577899999974210 0001112222 221 1245
Q ss_pred cEEEEEcCChhhhhh-h----cCCceEeCCCCChHHHHHHHHHhhc
Q 002308 287 SKILITTRKESIVSM-M----RSTDIISIEELAEEECWVLFKRLAF 327 (938)
Q Consensus 287 s~ilvTtr~~~v~~~-~----~~~~~~~l~~L~~~~~~~lf~~~~~ 327 (938)
.+||.||...+.... + .-...+++...+.++..++|..++.
T Consensus 323 V~VI~ATNr~d~LDpaLlRpGRfd~~I~~~~Pd~~~R~~Il~~~~~ 368 (438)
T PTZ00361 323 VKVIMATNRIESLDPALIRPGRIDRKIEFPNPDEKTKRRIFEIHTS 368 (438)
T ss_pred eEEEEecCChHHhhHHhccCCeeEEEEEeCCCCHHHHHHHHHHHHh
Confidence 678888876544333 1 1245789999999999999998764
No 183
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=97.47 E-value=0.0041 Score=65.65 Aligned_cols=175 Identities=13% Similarity=0.107 Sum_probs=101.1
Q ss_pred hHHHHHHHHhccCcccCCCeEEEEEEccCCChHHHHHHHHhhhhhhhcc----------------cCeEEEEEeCCCCCH
Q 002308 158 ERNALLSMLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNHVEVKRE----------------FDKTLWVCVSETFDE 221 (938)
Q Consensus 158 ~~~~l~~~l~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~----------------f~~~~wv~~~~~~~~ 221 (938)
..+.+...+... .-..-+.++|+.|+||+++|..++...--... ..-..|+......
T Consensus 12 ~~~~l~~~~~~~-----rl~HA~Lf~Gp~G~GK~~lA~~lA~~LlC~~~~~~~~c~~c~~~~~g~HPD~~~i~~~p~~-- 84 (319)
T PRK08769 12 AYDQTVAALDAG-----RLGHGLLICGPEGLGKRAVALALAEHVLASGPDPAAAQRTRQLIAAGTHPDLQLVSFIPNR-- 84 (319)
T ss_pred HHHHHHHHHHcC-----CcceeEeeECCCCCCHHHHHHHHHHHHhCCCCCCCCcchHHHHHhcCCCCCEEEEecCCCc--
Confidence 455566666532 24567899999999999999988874211110 1111122100000
Q ss_pred HHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHh-----cCceEEEEEecCCCCCccChhHHHHhhhCCCCCcEEEEEcCCh
Q 002308 222 FRIAKAMLEALTGSTSNLNALQSLLISIDESI-----AGKRFLLVLDDVWDGDYIKWEPFYRCLKKGLHGSKILITTRKE 296 (938)
Q Consensus 222 ~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l-----~~~~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtr~~ 296 (938)
-+........++++.. +.+.+ .+++=++|+|+++......-..++..+..-..++.+|++|.+.
T Consensus 85 ----------~~~k~~~~I~idqIR~-l~~~~~~~p~~g~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~~~fiL~~~~~ 153 (319)
T PRK08769 85 ----------TGDKLRTEIVIEQVRE-ISQKLALTPQYGIAQVVIVDPADAINRAACNALLKTLEEPSPGRYLWLISAQP 153 (319)
T ss_pred ----------ccccccccccHHHHHH-HHHHHhhCcccCCcEEEEeccHhhhCHHHHHHHHHHhhCCCCCCeEEEEECCh
Confidence 0000000112233222 22222 2456689999998776566667777777655677666666654
Q ss_pred -hhhhh-hcCCceEeCCCCChHHHHHHHHHhhcCCCCCchhhHHHHHHHHHHHhcCCChhHHHHHH
Q 002308 297 -SIVSM-MRSTDIISIEELAEEECWVLFKRLAFFGRSTEECEKLEQIGQRIARKCKGLPLAAKTMG 360 (938)
Q Consensus 297 -~v~~~-~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~~~ 360 (938)
.+... .+....+.+.+++.+++.+.+.... . . ...+..++..++|.|+....+.
T Consensus 154 ~~lLpTIrSRCq~i~~~~~~~~~~~~~L~~~~----~--~----~~~a~~~~~l~~G~p~~A~~~~ 209 (319)
T PRK08769 154 ARLPATIRSRCQRLEFKLPPAHEALAWLLAQG----V--S----ERAAQEALDAARGHPGLAAQWL 209 (319)
T ss_pred hhCchHHHhhheEeeCCCcCHHHHHHHHHHcC----C--C----hHHHHHHHHHcCCCHHHHHHHh
Confidence 34333 3446789999999999988886531 1 1 1115678999999998765544
No 184
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=97.46 E-value=0.0022 Score=70.17 Aligned_cols=159 Identities=13% Similarity=0.131 Sum_probs=87.7
Q ss_pred CCceecchhhHHHHHHHHhccCc-------ccCCCeEEEEEEccCCChHHHHHHHHhhhhhhhcccCeEEEEEeCCCCCH
Q 002308 149 EEEICGRVGERNALLSMLLCESS-------EQQKGLHIISIVGMGGIGKTTLAQLACNHVEVKREFDKTLWVCVSETFDE 221 (938)
Q Consensus 149 ~~~~vGr~~~~~~l~~~l~~~~~-------~~~~~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~ 221 (938)
-..+.|.+...+++.+.+..+-. -+-...+-+.++|++|+|||++|+.+++. ....| +.+..
T Consensus 144 ~~digGl~~~k~~l~~~v~~pl~~~~~~~~~Gl~~pkgvLL~GppGTGKT~LAkalA~~--l~~~f-----i~i~~---- 212 (398)
T PTZ00454 144 YSDIGGLDIQKQEIREAVELPLTCPELYEQIGIDPPRGVLLYGPPGTGKTMLAKAVAHH--TTATF-----IRVVG---- 212 (398)
T ss_pred HHHcCCHHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHh--cCCCE-----EEEeh----
Confidence 34688988888888776642110 00234577899999999999999999984 32222 22211
Q ss_pred HHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHhcCceEEEEEecCCCCC------c----cC----hhHHHHhhhC--CCC
Q 002308 222 FRIAKAMLEALTGSTSNLNALQSLLISIDESIAGKRFLLVLDDVWDGD------Y----IK----WEPFYRCLKK--GLH 285 (938)
Q Consensus 222 ~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~------~----~~----~~~l~~~l~~--~~~ 285 (938)
.. +.....+. ....+...+.......+.+|++|+++..- . .. +..+...+.. ...
T Consensus 213 s~----l~~k~~ge-----~~~~lr~lf~~A~~~~P~ILfIDEID~i~~~r~~~~~~~d~~~~r~l~~LL~~ld~~~~~~ 283 (398)
T PTZ00454 213 SE----FVQKYLGE-----GPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGADREVQRILLELLNQMDGFDQTT 283 (398)
T ss_pred HH----HHHHhcch-----hHHHHHHHHHHHHhcCCeEEEEECHhhhccccccccCCccHHHHHHHHHHHHHhhccCCCC
Confidence 11 11111110 01112222222334578899999975310 0 01 1122222221 124
Q ss_pred CcEEEEEcCChhhhhh-h----cCCceEeCCCCChHHHHHHHHHhhc
Q 002308 286 GSKILITTRKESIVSM-M----RSTDIISIEELAEEECWVLFKRLAF 327 (938)
Q Consensus 286 gs~ilvTtr~~~v~~~-~----~~~~~~~l~~L~~~~~~~lf~~~~~ 327 (938)
+..||.||...+.... + .-...+++...+.++..++|..+..
T Consensus 284 ~v~VI~aTN~~d~LDpAllR~GRfd~~I~~~~P~~~~R~~Il~~~~~ 330 (398)
T PTZ00454 284 NVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLIFQTITS 330 (398)
T ss_pred CEEEEEecCCchhCCHHHcCCCcccEEEEeCCcCHHHHHHHHHHHHh
Confidence 5678888876543322 1 1245688888888888888887653
No 185
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.41 E-value=6.2e-05 Score=87.80 Aligned_cols=132 Identities=23% Similarity=0.261 Sum_probs=92.3
Q ss_pred cccceEEEEccCCCc--Cc-ccccccCceeEEeccCCCCCCCCchhhHHHHHhccCCCeeEEecCCCCCCcccCcccccc
Q 002308 515 EKVRHLMLIMGKEST--FP-ISTCRAKRIRSLLIEWPEFGHSSLNGEILEELFRESTSLRALDFPSFYLPLEIPRNIEKL 591 (938)
Q Consensus 515 ~~~r~l~l~~~~~~~--~~-~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~n~~~~~lp~~~~~l 591 (938)
.+++++++.+...-. -+ .-...+|.|++|.+.+-.+... + ....+.++++|+.||+++++ +..+ ..+++|
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~----d-F~~lc~sFpNL~sLDIS~Tn-I~nl-~GIS~L 194 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDND----D-FSQLCASFPNLRSLDISGTN-ISNL-SGISRL 194 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecch----h-HHHHhhccCccceeecCCCC-ccCc-HHHhcc
Confidence 678999997754321 11 1224679999998887654322 2 34457889999999999998 4444 568899
Q ss_pred CCCCeeeecCCcccccc--ccccCCCCccEEEcCCCCCccccccc-------ccccCccceeecCCCccccc
Q 002308 592 VHLRYLNLSDQKIKKLP--ETLCELYNLEKLDISGCSDLRELPKG-------IGKLINMKHLLNSGTRSLRY 654 (938)
Q Consensus 592 ~~L~~L~L~~~~i~~lp--~~i~~l~~L~~L~l~~~~~l~~lp~~-------i~~l~~L~~L~l~~~~~~~~ 654 (938)
++|+.|.+.+-.+..-+ ..+.+|++|+.||+|....... +.. -..|++|+.||.+++.....
T Consensus 195 knLq~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~-~~ii~qYlec~~~LpeLrfLDcSgTdi~~~ 265 (699)
T KOG3665|consen 195 KNLQVLSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDD-TKIIEQYLECGMVLPELRFLDCSGTDINEE 265 (699)
T ss_pred ccHHHHhccCCCCCchhhHHHHhcccCCCeeeccccccccc-hHHHHHHHHhcccCccccEEecCCcchhHH
Confidence 99999999987776433 3578899999999998764332 211 12478899999888755443
No 186
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=97.41 E-value=0.0014 Score=77.43 Aligned_cols=157 Identities=17% Similarity=0.207 Sum_probs=87.0
Q ss_pred CceecchhhHHHHHHHHhccCcccCCCeEEEEEEccCCChHHHHHHHHhhhhhhhc-c---cCeEEEEEeCCCCCHHHHH
Q 002308 150 EEICGRVGERNALLSMLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNHVEVKR-E---FDKTLWVCVSETFDEFRIA 225 (938)
Q Consensus 150 ~~~vGr~~~~~~l~~~l~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~-~---f~~~~wv~~~~~~~~~~~~ 225 (938)
+.++||+.++.++.+.|.... ..-+.++|++|+|||++|+.++....... . .++.+|.. +...+
T Consensus 186 ~~liGR~~ei~~~i~iL~r~~------~~n~LLvGppGvGKT~lae~la~~i~~~~vP~~l~~~~~~~l-----~~~~l- 253 (758)
T PRK11034 186 DPLIGREKELERAIQVLCRRR------KNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSL-----DIGSL- 253 (758)
T ss_pred CcCcCCCHHHHHHHHHHhccC------CCCeEEECCCCCCHHHHHHHHHHHHHhcCCCchhcCCeEEec-----cHHHH-
Confidence 358999999999999998632 23456899999999999999987421111 1 13344421 11111
Q ss_pred HHHHHHhcCCCCCCCcHHHHHHHHHHHh-cCceEEEEEecCCCC--------CccChhHHHHhhhCCCCCcEEEEEcCCh
Q 002308 226 KAMLEALTGSTSNLNALQSLLISIDESI-AGKRFLLVLDDVWDG--------DYIKWEPFYRCLKKGLHGSKILITTRKE 296 (938)
Q Consensus 226 ~~i~~~l~~~~~~~~~~~~~~~~l~~~l-~~~~~LlVlDdv~~~--------~~~~~~~l~~~l~~~~~gs~ilvTtr~~ 296 (938)
+ .+. ....+.++....+-+.+ +.++.+|++|++... ...+...+..++.. ...-++|-+|..+
T Consensus 254 ---l---aG~-~~~Ge~e~rl~~l~~~l~~~~~~ILfIDEIh~L~g~g~~~~g~~d~~nlLkp~L~-~g~i~vIgATt~~ 325 (758)
T PRK11034 254 ---L---AGT-KYRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLS-SGKIRVIGSTTYQ 325 (758)
T ss_pred ---h---ccc-chhhhHHHHHHHHHHHHHhcCCCEEEeccHHHHhccCCCCCcHHHHHHHHHHHHh-CCCeEEEecCChH
Confidence 1 110 01112233333332222 345679999999531 11122222222222 1233455555544
Q ss_pred hhhhh-------hcCCceEeCCCCChHHHHHHHHHhh
Q 002308 297 SIVSM-------MRSTDIISIEELAEEECWVLFKRLA 326 (938)
Q Consensus 297 ~v~~~-------~~~~~~~~l~~L~~~~~~~lf~~~~ 326 (938)
+.... ...-+.+.+.+.+.+++.+++....
T Consensus 326 E~~~~~~~D~AL~rRFq~I~v~ePs~~~~~~IL~~~~ 362 (758)
T PRK11034 326 EFSNIFEKDRALARRFQKIDITEPSIEETVQIINGLK 362 (758)
T ss_pred HHHHHhhccHHHHhhCcEEEeCCCCHHHHHHHHHHHH
Confidence 43211 1223579999999999999988653
No 187
>PF07693 KAP_NTPase: KAP family P-loop domain; InterPro: IPR011646 The KAP (after Kidins220/ARMS and PifA) family of predicted NTPases are sporadically distributed across a wide phylogenetic range in bacteria and in animals. Many of the prokaryotic KAP NTPases are encoded in plasmids and tend to undergo disruption to form pseudogenes. A unique feature of all eukaryotic and certain bacterial KAP NTPases is the presence of two or four transmembrane helices inserted into the P-loop NTPase domain. These transmembrane helices anchor KAP NTPases in the membrane such that the P-loop domain is located on the intracellular side [].
Probab=97.38 E-value=0.0084 Score=65.00 Aligned_cols=167 Identities=12% Similarity=0.133 Sum_probs=93.7
Q ss_pred hhhHHHHHHHHhccCcccCCCeEEEEEEccCCChHHHHHHHHhhhhhhh-cccCeEEEEEeCCCC----CHHHHHHHHHH
Q 002308 156 VGERNALLSMLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNHVEVK-REFDKTLWVCVSETF----DEFRIAKAMLE 230 (938)
Q Consensus 156 ~~~~~~l~~~l~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~v~~~~~~~-~~f~~~~wv~~~~~~----~~~~~~~~i~~ 230 (938)
+.-.+.+.+.+.... .....+|+|.|.-|+|||++.+.+....+.. ..--.+++.+..... -...++..|..
T Consensus 2 ~~~a~~la~~I~~~~---~~~~~~IgL~G~WGsGKSs~l~~l~~~L~~~~~~~~~~i~fn~w~~~~~~~~~~~~~~~l~~ 78 (325)
T PF07693_consen 2 KPYAKALAEIIKNPD---SDDPFVIGLYGEWGSGKSSFLNMLKEELKEDNKEKYIFIYFNAWEYDGEDDLWASFLEELFD 78 (325)
T ss_pred hHHHHHHHHHHhccC---CCCCeEEEEECCCCCCHHHHHHHHHHHHhcccccceeeEEEccccCCCcchHHHHHHHHHHH
Confidence 344566777776543 2478999999999999999999998853322 001223344332222 23445555555
Q ss_pred HhcCCCC-----------------------------C-------------------------------------CCcHHH
Q 002308 231 ALTGSTS-----------------------------N-------------------------------------LNALQS 244 (938)
Q Consensus 231 ~l~~~~~-----------------------------~-------------------------------------~~~~~~ 244 (938)
++..... . ..+.++
T Consensus 79 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (325)
T PF07693_consen 79 QLEKHFGSKKIKLYAKKKLKSLKIKFKIKINLSKAIPLALIGLPALILAVAIAKLKAELKNAFKSLEEKFLKKLKKEVEE 158 (325)
T ss_pred HHHHhcCccchhHHHhhhhhhhhceeeeeeecceeehHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHhhhhhHHHHH
Confidence 4431100 0 001111
Q ss_pred HHHHHHHHhc--CceEEEEEecCCCCCccChhHHHHhhhC--CCCCcEEEEEcCChhhhhhhcC----------------
Q 002308 245 LLISIDESIA--GKRFLLVLDDVWDGDYIKWEPFYRCLKK--GLHGSKILITTRKESIVSMMRS---------------- 304 (938)
Q Consensus 245 ~~~~l~~~l~--~~~~LlVlDdv~~~~~~~~~~l~~~l~~--~~~gs~ilvTtr~~~v~~~~~~---------------- 304 (938)
....+.+.+. ++|.++|+||+++.+......+...+.. ..++..+|+..-.+.+......
T Consensus 159 ~~~~~~~~l~~~~~~iViiIDdLDR~~~~~i~~~l~~ik~~~~~~~i~~Il~~D~~~l~~ai~~~~~~~~~~~~~~~yLe 238 (325)
T PF07693_consen 159 LISKIKKKLKESKKRIVIIIDDLDRCSPEEIVELLEAIKLLLDFPNIIFILAFDPEILEKAIEKNYGEGFDEIDGREYLE 238 (325)
T ss_pred HHHHHHHhhhcCCceEEEEEcchhcCCcHHHHHHHHHHHHhcCCCCeEEEEEecHHHHHHHHHhhcCcccccccHHHHHH
Confidence 2223333443 5799999999988765554555555443 2377777777765555543211
Q ss_pred ---CceEeCCCCChHHHHHHHHHh
Q 002308 305 ---TDIISIEELAEEECWVLFKRL 325 (938)
Q Consensus 305 ---~~~~~l~~L~~~~~~~lf~~~ 325 (938)
..++.+.+.+..+-..+|...
T Consensus 239 Kiiq~~~~lP~~~~~~~~~~~~~~ 262 (325)
T PF07693_consen 239 KIIQVPFSLPPPSPSDLERYLNEL 262 (325)
T ss_pred hhcCeEEEeCCCCHHHHHHHHHHH
Confidence 125667777766665555554
No 188
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=97.38 E-value=0.0051 Score=63.86 Aligned_cols=111 Identities=14% Similarity=0.159 Sum_probs=59.6
Q ss_pred EEEEEEccCCChHHHHHHHHhhhhhhhcccCeEEEEEeCCCCCHHHHHHHH------------HHHhcCCCC-CCCcHHH
Q 002308 178 HIISIVGMGGIGKTTLAQLACNHVEVKREFDKTLWVCVSETFDEFRIAKAM------------LEALTGSTS-NLNALQS 244 (938)
Q Consensus 178 ~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i------------~~~l~~~~~-~~~~~~~ 244 (938)
+.|.|.|++|+|||++|+.++. .... ..+.+++....+..+++... ......... ....+.
T Consensus 22 ~~vLL~G~~GtGKT~lA~~la~--~lg~---~~~~i~~~~~~~~~dllg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 95 (262)
T TIGR02640 22 YPVHLRGPAGTGKTTLAMHVAR--KRDR---PVMLINGDAELTTSDLVGSYAGYTRKKVHDQFIHNVVKLEDIVRQNWV- 95 (262)
T ss_pred CeEEEEcCCCCCHHHHHHHHHH--HhCC---CEEEEeCCccCCHHHHhhhhcccchhhHHHHHHHHhhhhhcccceeec-
Confidence 3567999999999999999986 2322 24455666555554443221 100000000 000000
Q ss_pred HHHHHHHHhcCceEEEEEecCCCCCccChhHHHHhhhCC----------------CCCcEEEEEcCCh
Q 002308 245 LLISIDESIAGKRFLLVLDDVWDGDYIKWEPFYRCLKKG----------------LHGSKILITTRKE 296 (938)
Q Consensus 245 ~~~~l~~~l~~~~~LlVlDdv~~~~~~~~~~l~~~l~~~----------------~~gs~ilvTtr~~ 296 (938)
...+..... +...+++|++...+...+..+...+..+ +++.+||+|+...
T Consensus 96 -~g~l~~A~~-~g~~lllDEi~r~~~~~q~~Ll~~Le~~~~~i~~~~~~~~~i~~~~~frvIaTsN~~ 161 (262)
T TIGR02640 96 -DNRLTLAVR-EGFTLVYDEFTRSKPETNNVLLSVFEEGVLELPGKRGTSRYVDVHPEFRVIFTSNPV 161 (262)
T ss_pred -CchHHHHHH-cCCEEEEcchhhCCHHHHHHHHHHhcCCeEEccCCCCCCceEecCCCCEEEEeeCCc
Confidence 001111112 3468899999887666666666665432 1356788888754
No 189
>CHL00176 ftsH cell division protein; Validated
Probab=97.38 E-value=0.0027 Score=73.70 Aligned_cols=178 Identities=17% Similarity=0.176 Sum_probs=95.6
Q ss_pred CCceecchhhHHHHHHH---HhccCc---ccCCCeEEEEEEccCCChHHHHHHHHhhhhhhhcccCeEEEEEeCCCCCHH
Q 002308 149 EEEICGRVGERNALLSM---LLCESS---EQQKGLHIISIVGMGGIGKTTLAQLACNHVEVKREFDKTLWVCVSETFDEF 222 (938)
Q Consensus 149 ~~~~vGr~~~~~~l~~~---l~~~~~---~~~~~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~ 222 (938)
-.++.|.++..+++.+. +..+.. -+....+-|.++|++|+|||++|+.++.. ... -|+.++..
T Consensus 182 f~dv~G~~~~k~~l~eiv~~lk~~~~~~~~g~~~p~gVLL~GPpGTGKT~LAralA~e--~~~-----p~i~is~s---- 250 (638)
T CHL00176 182 FRDIAGIEEAKEEFEEVVSFLKKPERFTAVGAKIPKGVLLVGPPGTGKTLLAKAIAGE--AEV-----PFFSISGS---- 250 (638)
T ss_pred HHhccChHHHHHHHHHHHHHHhCHHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHH--hCC-----CeeeccHH----
Confidence 34678877665555444 332211 00123456899999999999999999884 221 23333211
Q ss_pred HHHHHHHHHhcCCCCCCCcHHHHHHHHHHHhcCceEEEEEecCCCCC----------ccChhH-HHHhh---hC--CCCC
Q 002308 223 RIAKAMLEALTGSTSNLNALQSLLISIDESIAGKRFLLVLDDVWDGD----------YIKWEP-FYRCL---KK--GLHG 286 (938)
Q Consensus 223 ~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~----------~~~~~~-l~~~l---~~--~~~g 286 (938)
++. ....+ .........+.+.....+.+|++||++... ...+.. +...+ .. ...+
T Consensus 251 ~f~----~~~~g-----~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~~dg~~~~~~ 321 (638)
T CHL00176 251 EFV----EMFVG-----VGAARVRDLFKKAKENSPCIVFIDEIDAVGRQRGAGIGGGNDEREQTLNQLLTEMDGFKGNKG 321 (638)
T ss_pred HHH----HHhhh-----hhHHHHHHHHHHHhcCCCcEEEEecchhhhhcccCCCCCCcHHHHHHHHHHHhhhccccCCCC
Confidence 111 11100 011223333444556788999999995321 111122 22222 21 2345
Q ss_pred cEEEEEcCChhhhhh-h----cCCceEeCCCCChHHHHHHHHHhhcCCCCCchhhHHHHHHHHHHHhcCC
Q 002308 287 SKILITTRKESIVSM-M----RSTDIISIEELAEEECWVLFKRLAFFGRSTEECEKLEQIGQRIARKCKG 351 (938)
Q Consensus 287 s~ilvTtr~~~v~~~-~----~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g 351 (938)
-.||.||...+.... + .-...+.+...+.++..++++.++..... .+ ......+++.+.|
T Consensus 322 ViVIaaTN~~~~LD~ALlRpGRFd~~I~v~lPd~~~R~~IL~~~l~~~~~---~~--d~~l~~lA~~t~G 386 (638)
T CHL00176 322 VIVIAATNRVDILDAALLRPGRFDRQITVSLPDREGRLDILKVHARNKKL---SP--DVSLELIARRTPG 386 (638)
T ss_pred eeEEEecCchHhhhhhhhccccCceEEEECCCCHHHHHHHHHHHHhhccc---ch--hHHHHHHHhcCCC
Confidence 566767766543222 1 12357888888999999999988743211 11 1224567777776
No 190
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.34 E-value=0.00011 Score=85.90 Aligned_cols=135 Identities=18% Similarity=0.098 Sum_probs=92.2
Q ss_pred cCceeEEeccCCCCCCCCchhhHHHHHhccCCCeeEEecCCCCCCcc-cCccccccCCCCeeeecCCccccccccccCCC
Q 002308 537 AKRIRSLLIEWPEFGHSSLNGEILEELFRESTSLRALDFPSFYLPLE-IPRNIEKLVHLRYLNLSDQKIKKLPETLCELY 615 (938)
Q Consensus 537 ~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~n~~~~~-lp~~~~~l~~L~~L~L~~~~i~~lp~~i~~l~ 615 (938)
-.+|+.|++.+... +...++......+|.|+.|.+.+-.+... +.....++++|+.||+|+++++.+ ..+++|+
T Consensus 121 r~nL~~LdI~G~~~----~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl-~GIS~Lk 195 (699)
T KOG3665|consen 121 RQNLQHLDISGSEL----FSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL-SGISRLK 195 (699)
T ss_pred HHhhhhcCccccch----hhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc-HHHhccc
Confidence 46788888877542 33556677677889999999888764332 334456788999999999998888 7789999
Q ss_pred CccEEEcCCCCCcc-cccccccccCccceeecCCCcccccC--C----ccCCCCCCCcccCeeEecCC
Q 002308 616 NLEKLDISGCSDLR-ELPKGIGKLINMKHLLNSGTRSLRYM--P----VGIGRLTGLRTLGEFHVSAG 676 (938)
Q Consensus 616 ~L~~L~l~~~~~l~-~lp~~i~~l~~L~~L~l~~~~~~~~~--p----~~l~~l~~L~~L~l~~~~~~ 676 (938)
+||+|.+++=.+.. .--..+.+|++|++||+|........ . +.-..|++|+.|+.++....
T Consensus 196 nLq~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~ 263 (699)
T KOG3665|consen 196 NLQVLSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDIN 263 (699)
T ss_pred cHHHHhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchh
Confidence 99999888744221 11224678899999999876433211 0 11134778888888765543
No 191
>COG1373 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=97.34 E-value=0.0033 Score=69.22 Aligned_cols=147 Identities=22% Similarity=0.192 Sum_probs=86.9
Q ss_pred EEEEEccCCChHHHHHHHHhhhhhhhcccCeEEEEEeCCCCCHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHhcCceE
Q 002308 179 IISIVGMGGIGKTTLAQLACNHVEVKREFDKTLWVCVSETFDEFRIAKAMLEALTGSTSNLNALQSLLISIDESIAGKRF 258 (938)
Q Consensus 179 vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~ 258 (938)
++.|.|+-++||||+++.+... .... .+++..-+......-+.+. .......-..++.
T Consensus 39 i~~i~GpR~~GKTtll~~l~~~--~~~~---~iy~~~~d~~~~~~~l~d~-----------------~~~~~~~~~~~~~ 96 (398)
T COG1373 39 IILILGPRQVGKTTLLKLLIKG--LLEE---IIYINFDDLRLDRIELLDL-----------------LRAYIELKEREKS 96 (398)
T ss_pred EEEEECCccccHHHHHHHHHhh--CCcc---eEEEEecchhcchhhHHHH-----------------HHHHHHhhccCCc
Confidence 9999999999999999666552 2111 5555433311111111111 1111111122778
Q ss_pred EEEEecCCCCCccChhHHHHhhhCCCCCcEEEEEcCChhhhhh------hcCCceEeCCCCChHHHHHHHHHhhcCCCCC
Q 002308 259 LLVLDDVWDGDYIKWEPFYRCLKKGLHGSKILITTRKESIVSM------MRSTDIISIEELAEEECWVLFKRLAFFGRST 332 (938)
Q Consensus 259 LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtr~~~v~~~------~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~ 332 (938)
.++||.|... ..|......+....+. +|++|+-+...... .+....+.+.||+-.|...+-...+.
T Consensus 97 yifLDEIq~v--~~W~~~lk~l~d~~~~-~v~itgsss~ll~~~~~~~L~GR~~~~~l~PlSF~Efl~~~~~~~~----- 168 (398)
T COG1373 97 YIFLDEIQNV--PDWERALKYLYDRGNL-DVLITGSSSSLLSKEISESLAGRGKDLELYPLSFREFLKLKGEEIE----- 168 (398)
T ss_pred eEEEecccCc--hhHHHHHHHHHccccc-eEEEECCchhhhccchhhhcCCCceeEEECCCCHHHHHhhcccccc-----
Confidence 9999999775 5799888888876655 88988887644332 23356899999999998765431000
Q ss_pred chhhHHHHHHHHHHHhcCCChhHHHH
Q 002308 333 EECEKLEQIGQRIARKCKGLPLAAKT 358 (938)
Q Consensus 333 ~~~~~~~~~~~~i~~~~~g~Plai~~ 358 (938)
..... ..-+-.-..||.|-++..
T Consensus 169 --~~~~~-~~f~~Yl~~GGfP~~v~~ 191 (398)
T COG1373 169 --PSKLE-LLFEKYLETGGFPESVKA 191 (398)
T ss_pred --hhHHH-HHHHHHHHhCCCcHHHhC
Confidence 00111 122333457888887754
No 192
>PRK12377 putative replication protein; Provisional
Probab=97.34 E-value=0.00056 Score=69.33 Aligned_cols=102 Identities=19% Similarity=0.134 Sum_probs=57.8
Q ss_pred eEEEEEEccCCChHHHHHHHHhhhhhhhcccCeEEEEEeCCCCCHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHhcCc
Q 002308 177 LHIISIVGMGGIGKTTLAQLACNHVEVKREFDKTLWVCVSETFDEFRIAKAMLEALTGSTSNLNALQSLLISIDESIAGK 256 (938)
Q Consensus 177 ~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~ 256 (938)
...+.++|.+|+|||+||.++++.. ......++++++. +++..+-..... ...... +.+.+ .+
T Consensus 101 ~~~l~l~G~~GtGKThLa~AIa~~l--~~~g~~v~~i~~~------~l~~~l~~~~~~----~~~~~~----~l~~l-~~ 163 (248)
T PRK12377 101 CTNFVFSGKPGTGKNHLAAAIGNRL--LAKGRSVIVVTVP------DVMSRLHESYDN----GQSGEK----FLQEL-CK 163 (248)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHH--HHcCCCeEEEEHH------HHHHHHHHHHhc----cchHHH----HHHHh-cC
Confidence 3578999999999999999999953 3333345666543 344444433321 111111 12222 34
Q ss_pred eEEEEEecCCCCCccChhH--HHHhhhCC-CCCcEEEEEcCC
Q 002308 257 RFLLVLDDVWDGDYIKWEP--FYRCLKKG-LHGSKILITTRK 295 (938)
Q Consensus 257 ~~LlVlDdv~~~~~~~~~~--l~~~l~~~-~~gs~ilvTtr~ 295 (938)
--||||||+.......|.. +...+... ...--+||||.-
T Consensus 164 ~dLLiIDDlg~~~~s~~~~~~l~~ii~~R~~~~~ptiitSNl 205 (248)
T PRK12377 164 VDLLVLDEIGIQRETKNEQVVLNQIIDRRTASMRSVGMLTNL 205 (248)
T ss_pred CCEEEEcCCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 5599999995543344543 44444332 222337888863
No 193
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=97.32 E-value=0.012 Score=62.03 Aligned_cols=177 Identities=9% Similarity=0.053 Sum_probs=102.5
Q ss_pred hHHHHHHHHhccCcccCCCeEEEEEEccCCChHHHHHHHHhhhhhhhcccCeEEEEEeCCCCCHHHHHHHHHHH------
Q 002308 158 ERNALLSMLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNHVEVKREFDKTLWVCVSETFDEFRIAKAMLEA------ 231 (938)
Q Consensus 158 ~~~~l~~~l~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~------ 231 (938)
..+++.+.+.. +.-.+.+.++|+.|+||+++|..++...--...-+. .++. -..-+.+...
T Consensus 11 ~~~~l~~~~~~-----~rl~hA~L~~G~~G~Gk~~lA~~~a~~llC~~~~~~----~Cg~----C~sC~~~~~g~HPD~~ 77 (319)
T PRK06090 11 VWQNWKAGLDA-----GRIPGALLLQSDEGLGVESLVELFSRALLCQNYQSE----ACGF----CHSCELMQSGNHPDLH 77 (319)
T ss_pred HHHHHHHHHHc-----CCcceeEeeECCCCCCHHHHHHHHHHHHcCCCCCCC----CCCC----CHHHHHHHcCCCCCEE
Confidence 34556666543 234578899999999999999998774211100000 0000 0000111000
Q ss_pred -hcCC-CCCCCcHHHHHHHHHHHh-----cCceEEEEEecCCCCCccChhHHHHhhhCCCCCcEEEEEcCCh-hhhhh-h
Q 002308 232 -LTGS-TSNLNALQSLLISIDESI-----AGKRFLLVLDDVWDGDYIKWEPFYRCLKKGLHGSKILITTRKE-SIVSM-M 302 (938)
Q Consensus 232 -l~~~-~~~~~~~~~~~~~l~~~l-----~~~~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtr~~-~v~~~-~ 302 (938)
+... ......++++.. +.+.+ .+++=++|+|+++.......+.+...+..-..++.+|++|.+. .+... .
T Consensus 78 ~i~p~~~~~~I~vdqiR~-l~~~~~~~~~~~~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~lLpTI~ 156 (319)
T PRK06090 78 VIKPEKEGKSITVEQIRQ-CNRLAQESSQLNGYRLFVIEPADAMNESASNALLKTLEEPAPNCLFLLVTHNQKRLLPTIV 156 (319)
T ss_pred EEecCcCCCcCCHHHHHH-HHHHHhhCcccCCceEEEecchhhhCHHHHHHHHHHhcCCCCCeEEEEEECChhhChHHHH
Confidence 0000 011122333322 22222 2445588999998877777888888887766677666665554 44433 3
Q ss_pred cCCceEeCCCCChHHHHHHHHHhhcCCCCCchhhHHHHHHHHHHHhcCCChhHHHHHH
Q 002308 303 RSTDIISIEELAEEECWVLFKRLAFFGRSTEECEKLEQIGQRIARKCKGLPLAAKTMG 360 (938)
Q Consensus 303 ~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~~~ 360 (938)
+....+.+.+++.+++.+.+.... . . .+..+++.++|.|+....+.
T Consensus 157 SRCq~~~~~~~~~~~~~~~L~~~~----~-~-------~~~~~l~l~~G~p~~A~~~~ 202 (319)
T PRK06090 157 SRCQQWVVTPPSTAQAMQWLKGQG----I-T-------VPAYALKLNMGSPLKTLAMM 202 (319)
T ss_pred hcceeEeCCCCCHHHHHHHHHHcC----C-c-------hHHHHHHHcCCCHHHHHHHh
Confidence 556789999999999999886531 1 1 13467889999999775553
No 194
>PRK10865 protein disaggregation chaperone; Provisional
Probab=97.31 E-value=0.0027 Score=77.07 Aligned_cols=138 Identities=16% Similarity=0.239 Sum_probs=78.0
Q ss_pred CceecchhhHHHHHHHHhccCc---ccCCCeEEEEEEccCCChHHHHHHHHhhhhhhhcccCeEEEEEeCCCCCHHHHHH
Q 002308 150 EEICGRVGERNALLSMLLCESS---EQQKGLHIISIVGMGGIGKTTLAQLACNHVEVKREFDKTLWVCVSETFDEFRIAK 226 (938)
Q Consensus 150 ~~~vGr~~~~~~l~~~l~~~~~---~~~~~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~ 226 (938)
..++|.+..++.+...+..... ..+.+..++.++|+.|+|||++|+.++... -..-...+.++++.-.. .
T Consensus 568 ~~viGQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~Lf~Gp~G~GKT~lA~aLa~~l--~~~~~~~i~id~se~~~-----~ 640 (857)
T PRK10865 568 HRVIGQNEAVEAVSNAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELCKALANFM--FDSDDAMVRIDMSEFME-----K 640 (857)
T ss_pred CeEeCCHHHHHHHHHHHHHHHhcccCCCCCCceEEEECCCCCCHHHHHHHHHHHh--hcCCCcEEEEEhHHhhh-----h
Confidence 4589999999998888864321 002233578899999999999999998732 11122344555443211 1
Q ss_pred HHHHHhcCCCCCCCcHHHHHHHHHHHhc-CceEEEEEecCCCCCccChhHHHHhhhCCC-----------CCcEEEEEcC
Q 002308 227 AMLEALTGSTSNLNALQSLLISIDESIA-GKRFLLVLDDVWDGDYIKWEPFYRCLKKGL-----------HGSKILITTR 294 (938)
Q Consensus 227 ~i~~~l~~~~~~~~~~~~~~~~l~~~l~-~~~~LlVlDdv~~~~~~~~~~l~~~l~~~~-----------~gs~ilvTtr 294 (938)
.....+.+.++.-...++ ...+...++ ...-+|+||++...+...+..+...+..+. ..+-||+||.
T Consensus 641 ~~~~~LiG~~pgy~g~~~-~g~l~~~v~~~p~~vLllDEieka~~~v~~~Ll~ile~g~l~d~~gr~vd~rn~iiI~TSN 719 (857)
T PRK10865 641 HSVSRLVGAPPGYVGYEE-GGYLTEAVRRRPYSVILLDEVEKAHPDVFNILLQVLDDGRLTDGQGRTVDFRNTVVIMTSN 719 (857)
T ss_pred hhHHHHhCCCCcccccch-hHHHHHHHHhCCCCeEEEeehhhCCHHHHHHHHHHHhhCceecCCceEEeecccEEEEeCC
Confidence 112222222211111111 111222222 233599999998777777777777775531 1233677776
Q ss_pred C
Q 002308 295 K 295 (938)
Q Consensus 295 ~ 295 (938)
.
T Consensus 720 ~ 720 (857)
T PRK10865 720 L 720 (857)
T ss_pred c
Confidence 5
No 195
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=97.30 E-value=0.01 Score=62.75 Aligned_cols=176 Identities=11% Similarity=0.095 Sum_probs=101.6
Q ss_pred HHHHHHHHhccCcccCCCeEEEEEEccCCChHHHHHHHHhhhhhhhcccCeEEEEEeCCCCCHHHHHHHHHHH-------
Q 002308 159 RNALLSMLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNHVEVKREFDKTLWVCVSETFDEFRIAKAMLEA------- 231 (938)
Q Consensus 159 ~~~l~~~l~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~------- 231 (938)
-+.+...+..+ .-.+-..++|+.|+||+++|..++...--...... ..++.-...+.+...
T Consensus 11 ~~~l~~~~~~~-----rl~HA~Lf~G~~G~GK~~lA~~~A~~llC~~~~~~-------~~Cg~C~sC~~~~~g~HPD~~~ 78 (325)
T PRK06871 11 YQQITQAFQQG-----LGHHALLFKADSGLGTEQLIRALAQWLMCQTPQGD-------QPCGQCHSCHLFQAGNHPDFHI 78 (325)
T ss_pred HHHHHHHHHcC-----CcceeEEeECCCCCCHHHHHHHHHHHHcCCCCCCC-------CCCCCCHHHHHHhcCCCCCEEE
Confidence 44566666532 24567789999999999999998874211110000 000000111111100
Q ss_pred hcCCCCCCCcHHHHHHHHHHHh-----cCceEEEEEecCCCCCccChhHHHHhhhCCCCCcEEEEEcCCh-hhhhh-hcC
Q 002308 232 LTGSTSNLNALQSLLISIDESI-----AGKRFLLVLDDVWDGDYIKWEPFYRCLKKGLHGSKILITTRKE-SIVSM-MRS 304 (938)
Q Consensus 232 l~~~~~~~~~~~~~~~~l~~~l-----~~~~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtr~~-~v~~~-~~~ 304 (938)
+.........+++... +.+.+ .+++=++|+|+++.........++..+..-..++.+|++|.++ .+... .+.
T Consensus 79 i~p~~~~~I~id~iR~-l~~~~~~~~~~g~~KV~iI~~a~~m~~~AaNaLLKtLEEPp~~~~fiL~t~~~~~llpTI~SR 157 (325)
T PRK06871 79 LEPIDNKDIGVDQVRE-INEKVSQHAQQGGNKVVYIQGAERLTEAAANALLKTLEEPRPNTYFLLQADLSAALLPTIYSR 157 (325)
T ss_pred EccccCCCCCHHHHHH-HHHHHhhccccCCceEEEEechhhhCHHHHHHHHHHhcCCCCCeEEEEEECChHhCchHHHhh
Confidence 0000011122333332 22222 2556688899998877677788888887766777777777654 44433 344
Q ss_pred CceEeCCCCChHHHHHHHHHhhcCCCCCchhhHHHHHHHHHHHhcCCChhHH
Q 002308 305 TDIISIEELAEEECWVLFKRLAFFGRSTEECEKLEQIGQRIARKCKGLPLAA 356 (938)
Q Consensus 305 ~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai 356 (938)
...+.+.+++.++..+.+..... . ... .+...+..++|.|..+
T Consensus 158 C~~~~~~~~~~~~~~~~L~~~~~---~--~~~----~~~~~~~l~~g~p~~A 200 (325)
T PRK06871 158 CQTWLIHPPEEQQALDWLQAQSS---A--EIS----EILTALRINYGRPLLA 200 (325)
T ss_pred ceEEeCCCCCHHHHHHHHHHHhc---c--ChH----HHHHHHHHcCCCHHHH
Confidence 67999999999999988877531 1 111 1456778899999644
No 196
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.29 E-value=1.5e-05 Score=69.50 Aligned_cols=84 Identities=20% Similarity=0.304 Sum_probs=50.7
Q ss_pred hccCCCeeEEecCCCCCCcccCccccc-cCCCCeeeecCCccccccccccCCCCccEEEcCCCCCcccccccccccCccc
Q 002308 564 FRESTSLRALDFPSFYLPLEIPRNIEK-LVHLRYLNLSDQKIKKLPETLCELYNLEKLDISGCSDLRELPKGIGKLINMK 642 (938)
Q Consensus 564 ~~~~~~Lr~L~L~~n~~~~~lp~~~~~-l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~l~~~~~l~~lp~~i~~l~~L~ 642 (938)
+.....|...+|++|. ...+|+.|.. .+.++.|+|++|.|..+|..+..++.|+.|+++.|. +...|..|..|.+|-
T Consensus 49 l~~~~el~~i~ls~N~-fk~fp~kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr~lNl~~N~-l~~~p~vi~~L~~l~ 126 (177)
T KOG4579|consen 49 LSKGYELTKISLSDNG-FKKFPKKFTIKFPTATTLNLANNEISDVPEELAAMPALRSLNLRFNP-LNAEPRVIAPLIKLD 126 (177)
T ss_pred HhCCceEEEEecccch-hhhCCHHHhhccchhhhhhcchhhhhhchHHHhhhHHhhhcccccCc-cccchHHHHHHHhHH
Confidence 3444556666666666 4455555543 235666666666666666666666666666666666 555566566666666
Q ss_pred eeecCCC
Q 002308 643 HLLNSGT 649 (938)
Q Consensus 643 ~L~l~~~ 649 (938)
.|+..+|
T Consensus 127 ~Lds~~n 133 (177)
T KOG4579|consen 127 MLDSPEN 133 (177)
T ss_pred HhcCCCC
Confidence 6665555
No 197
>PRK06921 hypothetical protein; Provisional
Probab=97.29 E-value=0.0017 Score=67.15 Aligned_cols=99 Identities=23% Similarity=0.343 Sum_probs=55.3
Q ss_pred eEEEEEEccCCChHHHHHHHHhhhhhhhcc-cCeEEEEEeCCCCCHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHhcC
Q 002308 177 LHIISIVGMGGIGKTTLAQLACNHVEVKRE-FDKTLWVCVSETFDEFRIAKAMLEALTGSTSNLNALQSLLISIDESIAG 255 (938)
Q Consensus 177 ~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~-f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~ 255 (938)
...+.++|..|+|||.||.++++. .... -..++|+.. .+++..+...+ +.....+. .+.
T Consensus 117 ~~~l~l~G~~G~GKThLa~aia~~--l~~~~g~~v~y~~~------~~l~~~l~~~~----------~~~~~~~~-~~~- 176 (266)
T PRK06921 117 KNSIALLGQPGSGKTHLLTAAANE--LMRKKGVPVLYFPF------VEGFGDLKDDF----------DLLEAKLN-RMK- 176 (266)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHH--HhhhcCceEEEEEH------HHHHHHHHHHH----------HHHHHHHH-Hhc-
Confidence 467899999999999999999995 3322 234566664 23333332221 11111122 222
Q ss_pred ceEEEEEecCCC-----CCccChhH--HHHhhhCC-CCCcEEEEEcCC
Q 002308 256 KRFLLVLDDVWD-----GDYIKWEP--FYRCLKKG-LHGSKILITTRK 295 (938)
Q Consensus 256 ~~~LlVlDdv~~-----~~~~~~~~--l~~~l~~~-~~gs~ilvTtr~ 295 (938)
+-=||||||+.. .....|.. +...+... ..+..+||||..
T Consensus 177 ~~dlLiIDDl~~~~~g~e~~t~~~~~~lf~iin~R~~~~k~tIitsn~ 224 (266)
T PRK06921 177 KVEVLFIDDLFKPVNGKPRATEWQIEQMYSVLNYRYLNHKPILISSEL 224 (266)
T ss_pred CCCEEEEeccccccCCCccCCHHHHHHHHHHHHHHHHCCCCEEEECCC
Confidence 335999999932 22234543 44444332 234458888874
No 198
>PRK08181 transposase; Validated
Probab=97.27 E-value=0.0011 Score=68.06 Aligned_cols=101 Identities=21% Similarity=0.160 Sum_probs=56.3
Q ss_pred EEEEEEccCCChHHHHHHHHhhhhhhhcccCeEEEEEeCCCCCHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHhcCce
Q 002308 178 HIISIVGMGGIGKTTLAQLACNHVEVKREFDKTLWVCVSETFDEFRIAKAMLEALTGSTSNLNALQSLLISIDESIAGKR 257 (938)
Q Consensus 178 ~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~ 257 (938)
.-+.++|++|+|||.||..+++.. ......++|+.+ .+++..+..... ....+.... .+. +.
T Consensus 107 ~nlll~Gp~GtGKTHLa~Aia~~a--~~~g~~v~f~~~------~~L~~~l~~a~~-----~~~~~~~l~----~l~-~~ 168 (269)
T PRK08181 107 ANLLLFGPPGGGKSHLAAAIGLAL--IENGWRVLFTRT------TDLVQKLQVARR-----ELQLESAIA----KLD-KF 168 (269)
T ss_pred ceEEEEecCCCcHHHHHHHHHHHH--HHcCCceeeeeH------HHHHHHHHHHHh-----CCcHHHHHH----HHh-cC
Confidence 358999999999999999998843 222234556543 345555543321 112222222 222 33
Q ss_pred EEEEEecCCCCCccChh--HHHHhhhCCCCCcEEEEEcCCh
Q 002308 258 FLLVLDDVWDGDYIKWE--PFYRCLKKGLHGSKILITTRKE 296 (938)
Q Consensus 258 ~LlVlDdv~~~~~~~~~--~l~~~l~~~~~gs~ilvTtr~~ 296 (938)
=||||||+.......|. .+...+.....+..+||||..+
T Consensus 169 dLLIIDDlg~~~~~~~~~~~Lf~lin~R~~~~s~IiTSN~~ 209 (269)
T PRK08181 169 DLLILDDLAYVTKDQAETSVLFELISARYERRSILITANQP 209 (269)
T ss_pred CEEEEeccccccCCHHHHHHHHHHHHHHHhCCCEEEEcCCC
Confidence 49999999654333332 3444444321123589998754
No 199
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=97.26 E-value=0.0017 Score=79.22 Aligned_cols=126 Identities=16% Similarity=0.240 Sum_probs=73.8
Q ss_pred CceecchhhHHHHHHHHhccCcc---cCCCeEEEEEEccCCChHHHHHHHHhhhhhhhcccCeEEEEEeCCCCCHHHHHH
Q 002308 150 EEICGRVGERNALLSMLLCESSE---QQKGLHIISIVGMGGIGKTTLAQLACNHVEVKREFDKTLWVCVSETFDEFRIAK 226 (938)
Q Consensus 150 ~~~vGr~~~~~~l~~~l~~~~~~---~~~~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~ 226 (938)
..++|.+..++.+...+.....+ ......++.++|+.|+|||++|+.+... ....-...+.++++.......
T Consensus 565 ~~v~GQ~~av~~v~~~i~~~~~gl~~~~~p~~~~Lf~Gp~GvGKt~lA~~La~~--l~~~~~~~i~~d~s~~~~~~~--- 639 (852)
T TIGR03346 565 ERVVGQDEAVEAVSDAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELAKALAEF--LFDDEDAMVRIDMSEYMEKHS--- 639 (852)
T ss_pred cccCCChHHHHHHHHHHHHHhccCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHH--hcCCCCcEEEEechhhcccch---
Confidence 45899999999999988754210 1223567889999999999999999874 222223344555554322111
Q ss_pred HHHHHhcCCCCCCCcHHHHHHHHHHHhc-CceEEEEEecCCCCCccChhHHHHhhhCC
Q 002308 227 AMLEALTGSTSNLNALQSLLISIDESIA-GKRFLLVLDDVWDGDYIKWEPFYRCLKKG 283 (938)
Q Consensus 227 ~i~~~l~~~~~~~~~~~~~~~~l~~~l~-~~~~LlVlDdv~~~~~~~~~~l~~~l~~~ 283 (938)
...+.+.+++-...++ ...+...++ ....+|+||++...+...+..+...+..+
T Consensus 640 --~~~l~g~~~g~~g~~~-~g~l~~~v~~~p~~vlllDeieka~~~v~~~Ll~~l~~g 694 (852)
T TIGR03346 640 --VARLIGAPPGYVGYEE-GGQLTEAVRRKPYSVVLFDEVEKAHPDVFNVLLQVLDDG 694 (852)
T ss_pred --HHHhcCCCCCccCccc-ccHHHHHHHcCCCcEEEEeccccCCHHHHHHHHHHHhcC
Confidence 1122222111111111 011222222 33459999999988777788888877654
No 200
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=97.25 E-value=0.0013 Score=65.58 Aligned_cols=37 Identities=27% Similarity=0.406 Sum_probs=30.2
Q ss_pred eEEEEEEccCCChHHHHHHHHhhhhhhhcccCeEEEEEe
Q 002308 177 LHIISIVGMGGIGKTTLAQLACNHVEVKREFDKTLWVCV 215 (938)
Q Consensus 177 ~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~ 215 (938)
.-.++|.|..|+||||++..+.. .....|..+++++-
T Consensus 13 ~fr~viIG~sGSGKT~li~~lL~--~~~~~f~~I~l~t~ 49 (241)
T PF04665_consen 13 PFRMVIIGKSGSGKTTLIKSLLY--YLRHKFDHIFLITP 49 (241)
T ss_pred CceEEEECCCCCCHHHHHHHHHH--hhcccCCEEEEEec
Confidence 34688999999999999999988 46678877777654
No 201
>PRK08939 primosomal protein DnaI; Reviewed
Probab=97.23 E-value=0.0022 Score=67.63 Aligned_cols=122 Identities=16% Similarity=0.251 Sum_probs=70.8
Q ss_pred cchhhHHHHHHHHhccCcccCCCeEEEEEEccCCChHHHHHHHHhhhhhhhcccCeEEEEEeCCCCCHHHHHHHHHHHhc
Q 002308 154 GRVGERNALLSMLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNHVEVKREFDKTLWVCVSETFDEFRIAKAMLEALT 233 (938)
Q Consensus 154 Gr~~~~~~l~~~l~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~ 233 (938)
+|........+++..-.. +...+-+.|+|..|+|||.||.++++... ...+ .+.|+++. .++.++.....
T Consensus 135 ~~~~~~~~~~~fi~~~~~--~~~~~gl~L~G~~G~GKThLa~Aia~~l~-~~g~-~v~~~~~~------~l~~~lk~~~~ 204 (306)
T PRK08939 135 DRLDALMAALDFLEAYPP--GEKVKGLYLYGDFGVGKSYLLAAIANELA-KKGV-SSTLLHFP------EFIRELKNSIS 204 (306)
T ss_pred HHHHHHHHHHHHHHHhhc--cCCCCeEEEECCCCCCHHHHHHHHHHHHH-HcCC-CEEEEEHH------HHHHHHHHHHh
Confidence 454555555555543221 12346799999999999999999999632 3333 35566543 45555554442
Q ss_pred CCCCCCCcHHHHHHHHHHHhcCceEEEEEecCCCCCccChhH--HHHhh-hCC-CCCcEEEEEcCC
Q 002308 234 GSTSNLNALQSLLISIDESIAGKRFLLVLDDVWDGDYIKWEP--FYRCL-KKG-LHGSKILITTRK 295 (938)
Q Consensus 234 ~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~~~~~~~--l~~~l-~~~-~~gs~ilvTtr~ 295 (938)
. ....+ .+.. +. +-=||||||+.......|.. +...+ ... ..+-.+|+||.-
T Consensus 205 ~-----~~~~~---~l~~-l~-~~dlLiIDDiG~e~~s~~~~~~ll~~Il~~R~~~~~~ti~TSNl 260 (306)
T PRK08939 205 D-----GSVKE---KIDA-VK-EAPVLMLDDIGAEQMSSWVRDEVLGVILQYRMQEELPTFFTSNF 260 (306)
T ss_pred c-----CcHHH---HHHH-hc-CCCEEEEecCCCccccHHHHHHHHHHHHHHHHHCCCeEEEECCC
Confidence 1 11222 2222 22 34589999997666667753 54444 322 244558899863
No 202
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=97.22 E-value=0.0047 Score=74.13 Aligned_cols=121 Identities=15% Similarity=0.187 Sum_probs=71.8
Q ss_pred CceecchhhHHHHHHHHhccCc---ccCCCeEEEEEEccCCChHHHHHHHHhhhhhhhcccCeEEEEEeCCCCCHHHHHH
Q 002308 150 EEICGRVGERNALLSMLLCESS---EQQKGLHIISIVGMGGIGKTTLAQLACNHVEVKREFDKTLWVCVSETFDEFRIAK 226 (938)
Q Consensus 150 ~~~vGr~~~~~~l~~~l~~~~~---~~~~~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~ 226 (938)
..++|.+..++.+...+..... .......++.++|+.|+|||+||+.++.. . +...+.++.++..+...
T Consensus 454 ~~v~GQ~~ai~~l~~~i~~~~~g~~~~~~p~~~~lf~Gp~GvGKT~lA~~la~~--l---~~~~~~~d~se~~~~~~--- 525 (731)
T TIGR02639 454 AKIFGQDEAIDSLVSSIKRSRAGLGNPNKPVGSFLFTGPTGVGKTELAKQLAEA--L---GVHLERFDMSEYMEKHT--- 525 (731)
T ss_pred cceeCcHHHHHHHHHHHHHHhcCCCCCCCCceeEEEECCCCccHHHHHHHHHHH--h---cCCeEEEeCchhhhccc---
Confidence 3578999888988888774321 00224457899999999999999999883 2 23345555554222111
Q ss_pred HHHHHhcCCCC--CCCcHHHHHHHHHHHhc-CceEEEEEecCCCCCccChhHHHHhhhCC
Q 002308 227 AMLEALTGSTS--NLNALQSLLISIDESIA-GKRFLLVLDDVWDGDYIKWEPFYRCLKKG 283 (938)
Q Consensus 227 ~i~~~l~~~~~--~~~~~~~~~~~l~~~l~-~~~~LlVlDdv~~~~~~~~~~l~~~l~~~ 283 (938)
+...++.... +...... +.+.++ ...-+++||+++......+..+...+..+
T Consensus 526 -~~~lig~~~gyvg~~~~~~----l~~~~~~~p~~VvllDEieka~~~~~~~Ll~~ld~g 580 (731)
T TIGR02639 526 -VSRLIGAPPGYVGFEQGGL----LTEAVRKHPHCVLLLDEIEKAHPDIYNILLQVMDYA 580 (731)
T ss_pred -HHHHhcCCCCCcccchhhH----HHHHHHhCCCeEEEEechhhcCHHHHHHHHHhhccC
Confidence 1111222111 1111222 233333 34459999999887776777777776654
No 203
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=97.22 E-value=0.0013 Score=79.32 Aligned_cols=137 Identities=19% Similarity=0.235 Sum_probs=78.5
Q ss_pred CceecchhhHHHHHHHHhccCc---ccCCCeEEEEEEccCCChHHHHHHHHhhhhhhhcccCeEEEEEeCCCCCHHHHHH
Q 002308 150 EEICGRVGERNALLSMLLCESS---EQQKGLHIISIVGMGGIGKTTLAQLACNHVEVKREFDKTLWVCVSETFDEFRIAK 226 (938)
Q Consensus 150 ~~~vGr~~~~~~l~~~l~~~~~---~~~~~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~ 226 (938)
..++|.+..++.+.+.+..... ..+....++.++|+.|+|||.+|+.++.. .-+.....+-++++...+..
T Consensus 566 ~~v~GQ~~Av~~v~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKT~lA~~La~~--l~~~~~~~~~~dmse~~~~~---- 639 (852)
T TIGR03345 566 ERVIGQDHALEAIAERIRTARAGLEDPRKPLGVFLLVGPSGVGKTETALALAEL--LYGGEQNLITINMSEFQEAH---- 639 (852)
T ss_pred CeEcChHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCCCHHHHHHHHHHH--HhCCCcceEEEeHHHhhhhh----
Confidence 4689999999999998864311 11334568899999999999999998774 21222233333333221111
Q ss_pred HHHHHhcCCCCCC--CcHHHHHHHHHHHhcCceEEEEEecCCCCCccChhHHHHhhhCCC-----------CCcEEEEEc
Q 002308 227 AMLEALTGSTSNL--NALQSLLISIDESIAGKRFLLVLDDVWDGDYIKWEPFYRCLKKGL-----------HGSKILITT 293 (938)
Q Consensus 227 ~i~~~l~~~~~~~--~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~~~~~~~l~~~l~~~~-----------~gs~ilvTt 293 (938)
.+.+-++.++... .....+...++ +...-+|+||++...+...++.+...+..+. ..+-||+||
T Consensus 640 ~~~~l~g~~~gyvg~~~~g~L~~~v~---~~p~svvllDEieka~~~v~~~Llq~ld~g~l~d~~Gr~vd~~n~iiI~TS 716 (852)
T TIGR03345 640 TVSRLKGSPPGYVGYGEGGVLTEAVR---RKPYSVVLLDEVEKAHPDVLELFYQVFDKGVMEDGEGREIDFKNTVILLTS 716 (852)
T ss_pred hhccccCCCCCcccccccchHHHHHH---hCCCcEEEEechhhcCHHHHHHHHHHhhcceeecCCCcEEeccccEEEEeC
Confidence 1111122211111 11112222222 2455699999998877766777777776553 345566676
Q ss_pred CC
Q 002308 294 RK 295 (938)
Q Consensus 294 r~ 295 (938)
.-
T Consensus 717 Nl 718 (852)
T TIGR03345 717 NA 718 (852)
T ss_pred CC
Confidence 53
No 204
>PRK04296 thymidine kinase; Provisional
Probab=97.19 E-value=0.0012 Score=64.83 Aligned_cols=113 Identities=14% Similarity=0.024 Sum_probs=63.1
Q ss_pred EEEEEEccCCChHHHHHHHHhhhhhhhcccCeEEEEEeCCCCCHHHHHHHHHHHhcCCCCC--CCcHHHHHHHHHHHhcC
Q 002308 178 HIISIVGMGGIGKTTLAQLACNHVEVKREFDKTLWVCVSETFDEFRIAKAMLEALTGSTSN--LNALQSLLISIDESIAG 255 (938)
Q Consensus 178 ~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~--~~~~~~~~~~l~~~l~~ 255 (938)
.++.|+|+.|.||||+|...+.. ...+-..++.+. ..++.+.....+++.++..... ....++....+.+ ..+
T Consensus 3 ~i~litG~~GsGKTT~~l~~~~~--~~~~g~~v~i~k--~~~d~~~~~~~i~~~lg~~~~~~~~~~~~~~~~~~~~-~~~ 77 (190)
T PRK04296 3 KLEFIYGAMNSGKSTELLQRAYN--YEERGMKVLVFK--PAIDDRYGEGKVVSRIGLSREAIPVSSDTDIFELIEE-EGE 77 (190)
T ss_pred EEEEEECCCCCHHHHHHHHHHHH--HHHcCCeEEEEe--ccccccccCCcEecCCCCcccceEeCChHHHHHHHHh-hCC
Confidence 47889999999999999998884 333333333332 1112222233455555432211 2234445555544 333
Q ss_pred ceEEEEEecCCCCCccChhHHHHhhhCCCCCcEEEEEcCChh
Q 002308 256 KRFLLVLDDVWDGDYIKWEPFYRCLKKGLHGSKILITTRKES 297 (938)
Q Consensus 256 ~~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtr~~~ 297 (938)
+.-+||+|.+...+..+...+...+. ..|..||+|.++.+
T Consensus 78 ~~dvviIDEaq~l~~~~v~~l~~~l~--~~g~~vi~tgl~~~ 117 (190)
T PRK04296 78 KIDCVLIDEAQFLDKEQVVQLAEVLD--DLGIPVICYGLDTD 117 (190)
T ss_pred CCCEEEEEccccCCHHHHHHHHHHHH--HcCCeEEEEecCcc
Confidence 45589999995432222223333332 36778999998753
No 205
>PRK07952 DNA replication protein DnaC; Validated
Probab=97.18 E-value=0.0029 Score=64.02 Aligned_cols=103 Identities=17% Similarity=0.213 Sum_probs=58.2
Q ss_pred eEEEEEEccCCChHHHHHHHHhhhhhhhcccCeEEEEEeCCCCCHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHhcCc
Q 002308 177 LHIISIVGMGGIGKTTLAQLACNHVEVKREFDKTLWVCVSETFDEFRIAKAMLEALTGSTSNLNALQSLLISIDESIAGK 256 (938)
Q Consensus 177 ~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~ 256 (938)
...+.++|.+|+|||+||.++++... ..-..+++++ +.+++..+-..... .....+. +.+.+. +
T Consensus 99 ~~~~~l~G~~GtGKThLa~aia~~l~--~~g~~v~~it------~~~l~~~l~~~~~~---~~~~~~~----~l~~l~-~ 162 (244)
T PRK07952 99 IASFIFSGKPGTGKNHLAAAICNELL--LRGKSVLIIT------VADIMSAMKDTFSN---SETSEEQ----LLNDLS-N 162 (244)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHH--hcCCeEEEEE------HHHHHHHHHHHHhh---ccccHHH----HHHHhc-c
Confidence 35789999999999999999999532 2223455664 34444444433321 1111122 222344 3
Q ss_pred eEEEEEecCCCCCccChhH--HHHhhhCC-CCCcEEEEEcCC
Q 002308 257 RFLLVLDDVWDGDYIKWEP--FYRCLKKG-LHGSKILITTRK 295 (938)
Q Consensus 257 ~~LlVlDdv~~~~~~~~~~--l~~~l~~~-~~gs~ilvTtr~ 295 (938)
.=+|||||+......+|.. +...+... ...-.+||||.-
T Consensus 163 ~dlLvIDDig~~~~s~~~~~~l~~Ii~~Ry~~~~~tiitSNl 204 (244)
T PRK07952 163 VDLLVIDEIGVQTESRYEKVIINQIVDRRSSSKRPTGMLTNS 204 (244)
T ss_pred CCEEEEeCCCCCCCCHHHHHHHHHHHHHHHhCCCCEEEeCCC
Confidence 3488889997655555653 33334332 223348888864
No 206
>PRK06526 transposase; Provisional
Probab=97.17 E-value=0.001 Score=68.01 Aligned_cols=101 Identities=19% Similarity=0.209 Sum_probs=54.7
Q ss_pred eEEEEEEccCCChHHHHHHHHhhhhhhhcccCeEEEEEeCCCCCHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHhcCc
Q 002308 177 LHIISIVGMGGIGKTTLAQLACNHVEVKREFDKTLWVCVSETFDEFRIAKAMLEALTGSTSNLNALQSLLISIDESIAGK 256 (938)
Q Consensus 177 ~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~ 256 (938)
..-+.|+|++|+|||+||..+..... +..+. +.|+ +..+++..+..... .... ...+.+ + .+
T Consensus 98 ~~nlll~Gp~GtGKThLa~al~~~a~-~~g~~-v~f~------t~~~l~~~l~~~~~-----~~~~---~~~l~~-l-~~ 159 (254)
T PRK06526 98 KENVVFLGPPGTGKTHLAIGLGIRAC-QAGHR-VLFA------TAAQWVARLAAAHH-----AGRL---QAELVK-L-GR 159 (254)
T ss_pred CceEEEEeCCCCchHHHHHHHHHHHH-HCCCc-hhhh------hHHHHHHHHHHHHh-----cCcH---HHHHHH-h-cc
Confidence 34689999999999999999988532 22332 3332 23344444443211 1111 122222 2 23
Q ss_pred eEEEEEecCCCCCccChh--HHHHhhhCC-CCCcEEEEEcCCh
Q 002308 257 RFLLVLDDVWDGDYIKWE--PFYRCLKKG-LHGSKILITTRKE 296 (938)
Q Consensus 257 ~~LlVlDdv~~~~~~~~~--~l~~~l~~~-~~gs~ilvTtr~~ 296 (938)
.-+||+||+.......+. .+...+... ..++ +|+||..+
T Consensus 160 ~dlLIIDD~g~~~~~~~~~~~L~~li~~r~~~~s-~IitSn~~ 201 (254)
T PRK06526 160 YPLLIVDEVGYIPFEPEAANLFFQLVSSRYERAS-LIVTSNKP 201 (254)
T ss_pred CCEEEEcccccCCCCHHHHHHHHHHHHHHHhcCC-EEEEcCCC
Confidence 458999999754322222 244444322 2344 88888754
No 207
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=97.14 E-value=0.021 Score=60.96 Aligned_cols=94 Identities=14% Similarity=0.203 Sum_probs=65.7
Q ss_pred CceEEEEEecCCCCCccChhHHHHhhhCCCCCcEEEEEcCC-hhhhhh-hcCCceEeCCCCChHHHHHHHHHhhcCCCCC
Q 002308 255 GKRFLLVLDDVWDGDYIKWEPFYRCLKKGLHGSKILITTRK-ESIVSM-MRSTDIISIEELAEEECWVLFKRLAFFGRST 332 (938)
Q Consensus 255 ~~~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtr~-~~v~~~-~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~ 332 (938)
+++=++|+|+++......+..++..+..-.+++.+|++|.+ ..+... .+..+.+.+.+++.++..+.+.... .
T Consensus 131 ~~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~LLpTI~SRcq~i~~~~~~~~~~~~~L~~~~----~- 205 (342)
T PRK06964 131 GGARVVVLYPAEALNVAAANALLKTLEEPPPGTVFLLVSARIDRLLPTILSRCRQFPMTVPAPEAAAAWLAAQG----V- 205 (342)
T ss_pred CCceEEEEechhhcCHHHHHHHHHHhcCCCcCcEEEEEECChhhCcHHHHhcCEEEEecCCCHHHHHHHHHHcC----C-
Confidence 44558899999888777888888888876667766555554 444433 3446789999999999999887641 1
Q ss_pred chhhHHHHHHHHHHHhcCCChhHHHHHH
Q 002308 333 EECEKLEQIGQRIARKCKGLPLAAKTMG 360 (938)
Q Consensus 333 ~~~~~~~~~~~~i~~~~~g~Plai~~~~ 360 (938)
.. ...++..++|.|.....+.
T Consensus 206 ~~-------~~~~l~~~~Gsp~~Al~~~ 226 (342)
T PRK06964 206 AD-------ADALLAEAGGAPLAALALA 226 (342)
T ss_pred Ch-------HHHHHHHcCCCHHHHHHHH
Confidence 11 2235778899997555443
No 208
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=97.13 E-value=0.0088 Score=68.51 Aligned_cols=187 Identities=13% Similarity=0.120 Sum_probs=96.2
Q ss_pred CCceecchhhHHHHHHHHh---ccCc---ccCCCeEEEEEEccCCChHHHHHHHHhhhhhhhcccCeEEEEEeCCCCCHH
Q 002308 149 EEEICGRVGERNALLSMLL---CESS---EQQKGLHIISIVGMGGIGKTTLAQLACNHVEVKREFDKTLWVCVSETFDEF 222 (938)
Q Consensus 149 ~~~~vGr~~~~~~l~~~l~---~~~~---~~~~~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~ 222 (938)
-.+++|.+...+++.+.+. .+.. .+....+-+.++|++|+|||++|+.++.. .... ++.++. .
T Consensus 54 ~~di~g~~~~k~~l~~~~~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~--~~~~-----~~~i~~----~ 122 (495)
T TIGR01241 54 FKDVAGIDEAKEELMEIVDFLKNPSKFTKLGAKIPKGVLLVGPPGTGKTLLAKAVAGE--AGVP-----FFSISG----S 122 (495)
T ss_pred HHHhCCHHHHHHHHHHHHHHHHCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHH--cCCC-----eeeccH----H
Confidence 3568888776666555443 2110 00223455899999999999999999874 2222 222221 1
Q ss_pred HHHHHHHHHhcCCCCCCCcHHHHHHHHHHHhcCceEEEEEecCCCCC----------ccChhH----HHHhhhC--CCCC
Q 002308 223 RIAKAMLEALTGSTSNLNALQSLLISIDESIAGKRFLLVLDDVWDGD----------YIKWEP----FYRCLKK--GLHG 286 (938)
Q Consensus 223 ~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~----------~~~~~~----l~~~l~~--~~~g 286 (938)
++ .....+ .....+...+.......+.+|++||++... ...+.. +...+.. ...+
T Consensus 123 ~~----~~~~~g-----~~~~~l~~~f~~a~~~~p~Il~iDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~~d~~~~~~~ 193 (495)
T TIGR01241 123 DF----VEMFVG-----VGASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGTNTG 193 (495)
T ss_pred HH----HHHHhc-----ccHHHHHHHHHHHHhcCCCEEEEechhhhhhccccCcCCccHHHHHHHHHHHhhhccccCCCC
Confidence 11 111110 011222333333444567899999985421 011112 2222211 1234
Q ss_pred cEEEEEcCChhhhh-hh----cCCceEeCCCCChHHHHHHHHHhhcCCCCCchhhHHHHHHHHHHHhcCC-ChhHHHHHH
Q 002308 287 SKILITTRKESIVS-MM----RSTDIISIEELAEEECWVLFKRLAFFGRSTEECEKLEQIGQRIARKCKG-LPLAAKTMG 360 (938)
Q Consensus 287 s~ilvTtr~~~v~~-~~----~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g-~Plai~~~~ 360 (938)
-.||.||..+.... .+ .-...+.+...+.++..++|..+....... ...+ ...+++.+.| .+-.+..+.
T Consensus 194 v~vI~aTn~~~~ld~al~r~gRfd~~i~i~~Pd~~~R~~il~~~l~~~~~~-~~~~----l~~la~~t~G~sgadl~~l~ 268 (495)
T TIGR01241 194 VIVIAATNRPDVLDPALLRPGRFDRQVVVDLPDIKGREEILKVHAKNKKLA-PDVD----LKAVARRTPGFSGADLANLL 268 (495)
T ss_pred eEEEEecCChhhcCHHHhcCCcceEEEEcCCCCHHHHHHHHHHHHhcCCCC-cchh----HHHHHHhCCCCCHHHHHHHH
Confidence 45666676543222 11 224578899889989999998876432211 1111 3477777776 344444433
No 209
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=97.12 E-value=0.0012 Score=63.59 Aligned_cols=100 Identities=21% Similarity=0.368 Sum_probs=51.8
Q ss_pred eEEEEEEccCCChHHHHHHHHhhhhhhhcccCeEEEEEeCCCCCHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHhcCc
Q 002308 177 LHIISIVGMGGIGKTTLAQLACNHVEVKREFDKTLWVCVSETFDEFRIAKAMLEALTGSTSNLNALQSLLISIDESIAGK 256 (938)
Q Consensus 177 ~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~ 256 (938)
..-+.++|..|+|||.||..+++.. ....+ .+.|+.+ .+++..+ ...... ...... ++ .+.+
T Consensus 47 ~~~l~l~G~~G~GKThLa~ai~~~~-~~~g~-~v~f~~~------~~L~~~l----~~~~~~-~~~~~~---~~-~l~~- 108 (178)
T PF01695_consen 47 GENLILYGPPGTGKTHLAVAIANEA-IRKGY-SVLFITA------SDLLDEL----KQSRSD-GSYEEL---LK-RLKR- 108 (178)
T ss_dssp --EEEEEESTTSSHHHHHHHHHHHH-HHTT---EEEEEH------HHHHHHH----HCCHCC-TTHCHH---HH-HHHT-
T ss_pred CeEEEEEhhHhHHHHHHHHHHHHHh-ccCCc-ceeEeec------Cceeccc----cccccc-cchhhh---cC-cccc-
Confidence 4569999999999999999999853 22333 3566653 3344443 322111 122222 22 2222
Q ss_pred eEEEEEecCCCCCccChhH--HHHhhhCC-CCCcEEEEEcCC
Q 002308 257 RFLLVLDDVWDGDYIKWEP--FYRCLKKG-LHGSKILITTRK 295 (938)
Q Consensus 257 ~~LlVlDdv~~~~~~~~~~--l~~~l~~~-~~gs~ilvTtr~ 295 (938)
-=||||||+.......|.. +...+... ..+ .+||||.-
T Consensus 109 ~dlLilDDlG~~~~~~~~~~~l~~ii~~R~~~~-~tIiTSN~ 149 (178)
T PF01695_consen 109 VDLLILDDLGYEPLSEWEAELLFEIIDERYERK-PTIITSNL 149 (178)
T ss_dssp SSCEEEETCTSS---HHHHHCTHHHHHHHHHT--EEEEEESS
T ss_pred ccEecccccceeeecccccccchhhhhHhhccc-CeEeeCCC
Confidence 2478899996654334432 33333221 223 48888874
No 210
>PRK09183 transposase/IS protein; Provisional
Probab=97.11 E-value=0.0019 Score=66.57 Aligned_cols=101 Identities=19% Similarity=0.263 Sum_probs=54.1
Q ss_pred EEEEEEccCCChHHHHHHHHhhhhhhhcccCeEEEEEeCCCCCHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHhcCce
Q 002308 178 HIISIVGMGGIGKTTLAQLACNHVEVKREFDKTLWVCVSETFDEFRIAKAMLEALTGSTSNLNALQSLLISIDESIAGKR 257 (938)
Q Consensus 178 ~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~ 257 (938)
..+.|+|++|+|||+||..++.... ...+ .+.++. ..++...+...... .. ....+++.+ .+.
T Consensus 103 ~~v~l~Gp~GtGKThLa~al~~~a~-~~G~-~v~~~~------~~~l~~~l~~a~~~-----~~---~~~~~~~~~-~~~ 165 (259)
T PRK09183 103 ENIVLLGPSGVGKTHLAIALGYEAV-RAGI-KVRFTT------AADLLLQLSTAQRQ-----GR---YKTTLQRGV-MAP 165 (259)
T ss_pred CeEEEEeCCCCCHHHHHHHHHHHHH-HcCC-eEEEEe------HHHHHHHHHHHHHC-----Cc---HHHHHHHHh-cCC
Confidence 4678999999999999999987422 2222 334443 22333333322111 11 112222222 344
Q ss_pred EEEEEecCCCCCccChh--HHHHhhhCC-CCCcEEEEEcCCh
Q 002308 258 FLLVLDDVWDGDYIKWE--PFYRCLKKG-LHGSKILITTRKE 296 (938)
Q Consensus 258 ~LlVlDdv~~~~~~~~~--~l~~~l~~~-~~gs~ilvTtr~~ 296 (938)
-++|+||+.......+. .+...+... ..++ +||||...
T Consensus 166 dlLiiDdlg~~~~~~~~~~~lf~li~~r~~~~s-~iiTsn~~ 206 (259)
T PRK09183 166 RLLIIDEIGYLPFSQEEANLFFQVIAKRYEKGS-MILTSNLP 206 (259)
T ss_pred CEEEEcccccCCCChHHHHHHHHHHHHHHhcCc-EEEecCCC
Confidence 59999999754333332 244444322 2354 88888743
No 211
>KOG2228 consensus Origin recognition complex, subunit 4 [Replication, recombination and repair]
Probab=97.10 E-value=0.0072 Score=61.64 Aligned_cols=172 Identities=17% Similarity=0.166 Sum_probs=98.3
Q ss_pred CceecchhhHHHHHHHHhccCcccCCCeEEEEEEccCCChHHHHHHHHhhhhhhhccc-CeEEEEEeCCCCCH-HHHHHH
Q 002308 150 EEICGRVGERNALLSMLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNHVEVKREF-DKTLWVCVSETFDE-FRIAKA 227 (938)
Q Consensus 150 ~~~vGr~~~~~~l~~~l~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f-~~~~wv~~~~~~~~-~~~~~~ 227 (938)
..++|-.++..++..++....- .+...-|.|+|+.|.|||+|...+..+ .+.| +..+-|........ +-.++.
T Consensus 24 ~~l~g~~~~~~~l~~~lkqt~~--~gEsnsviiigprgsgkT~li~~~Ls~---~q~~~E~~l~v~Lng~~~~dk~al~~ 98 (408)
T KOG2228|consen 24 INLFGVQDEQKHLSELLKQTIL--HGESNSVIIIGPRGSGKTILIDTRLSD---IQENGENFLLVRLNGELQTDKIALKG 98 (408)
T ss_pred cceeehHHHHHHHHHHHHHHHH--hcCCCceEEEccCCCCceEeeHHHHhh---HHhcCCeEEEEEECccchhhHHHHHH
Confidence 4588999999999888875433 234566889999999999999988886 2333 22333444333322 223444
Q ss_pred HHHHh----cCCCCCCCcHHHHHHHHHHHhc------CceEEEEEecCCCCCccC-hhHHHHhhhC----CCCCcEEEEE
Q 002308 228 MLEAL----TGSTSNLNALQSLLISIDESIA------GKRFLLVLDDVWDGDYIK-WEPFYRCLKK----GLHGSKILIT 292 (938)
Q Consensus 228 i~~~l----~~~~~~~~~~~~~~~~l~~~l~------~~~~LlVlDdv~~~~~~~-~~~l~~~l~~----~~~gs~ilvT 292 (938)
|.+++ ...........+....+-..|+ +.++++|+|.++-..... -..+...|.- ..|=+-|-+|
T Consensus 99 I~rql~~e~~~~~k~~gsfte~l~~lL~~L~~~~~~t~~~ViFIldEfDlf~~h~rQtllYnlfDisqs~r~Piciig~T 178 (408)
T KOG2228|consen 99 ITRQLALELNRIVKSFGSFTENLSKLLEALKKGDETTSGKVIFILDEFDLFAPHSRQTLLYNLFDISQSARAPICIIGVT 178 (408)
T ss_pred HHHHHHHHHhhhheeecccchhHHHHHHHHhcCCCCCCceEEEEeehhhccccchhhHHHHHHHHHHhhcCCCeEEEEee
Confidence 44444 3222222233333444444443 236888998875432211 2223444432 2355666689
Q ss_pred cCChh-------hhhhhcCCceEeCCCCChHHHHHHHHHhh
Q 002308 293 TRKES-------IVSMMRSTDIISIEELAEEECWVLFKRLA 326 (938)
Q Consensus 293 tr~~~-------v~~~~~~~~~~~l~~L~~~~~~~lf~~~~ 326 (938)
||-.. |-.......++-++.++-++...+++...
T Consensus 179 trld~lE~LEKRVKSRFshr~I~m~~~~~l~~yv~l~r~ll 219 (408)
T KOG2228|consen 179 TRLDILELLEKRVKSRFSHRVIFMLPSLPLGDYVDLYRKLL 219 (408)
T ss_pred ccccHHHHHHHHHHhhcccceeeccCCCChHHHHHHHHHHh
Confidence 99642 22222333456667777888888887764
No 212
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=97.10 E-value=0.0021 Score=61.52 Aligned_cols=46 Identities=22% Similarity=0.187 Sum_probs=37.8
Q ss_pred CCceecchhhHHHHHHHHhccCcccCCCeEEEEEEccCCChHHHHHHHHhhh
Q 002308 149 EEEICGRVGERNALLSMLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNH 200 (938)
Q Consensus 149 ~~~~vGr~~~~~~l~~~l~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~v~~~ 200 (938)
-.++||-++.++++.-.... .+..-+.|.||+|+||||-+...++.
T Consensus 26 l~dIVGNe~tv~rl~via~~------gnmP~liisGpPG~GKTTsi~~LAr~ 71 (333)
T KOG0991|consen 26 LQDIVGNEDTVERLSVIAKE------GNMPNLIISGPPGTGKTTSILCLARE 71 (333)
T ss_pred HHHhhCCHHHHHHHHHHHHc------CCCCceEeeCCCCCchhhHHHHHHHH
Confidence 35689999999988877653 35677899999999999999888874
No 213
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.08 E-value=0.0006 Score=64.10 Aligned_cols=106 Identities=24% Similarity=0.262 Sum_probs=77.6
Q ss_pred cCCceEEEEecCCCCCCCCCccchHHHHhhCCCCCCCCeEEEeeecCCCCCCCchhccCCCCEEEEecCCCCC--cCCCC
Q 002308 723 YLSRLRLEFDKKGGGGGRRKNEDDQLLLEALQPPLNLKELEIHYYGGNTVFPSWMASLTNLKSLDLCFCENCE--QLPPL 800 (938)
Q Consensus 723 ~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~--~l~~l 800 (938)
+...++|+.|.+.. ...|..++.|.+|.+.+|.++..-|..-..+++|..|.|.+|.+.. ++..+
T Consensus 43 ~~d~iDLtdNdl~~-------------l~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pL 109 (233)
T KOG1644|consen 43 QFDAIDLTDNDLRK-------------LDNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPL 109 (233)
T ss_pred ccceecccccchhh-------------cccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchh
Confidence 45667777776643 5678888999999999999999444433477899999999997654 56669
Q ss_pred CCCCccceeecccccCceEeCc-ccccCCCCCCCCCCCCcccccCCccceeeccccc
Q 002308 801 GKLPSLEQLFISYMSSVKRVGD-EFLGVESDRHDSSSSSSVIIAFPKLKSLSIFEME 856 (938)
Q Consensus 801 ~~l~~L~~L~L~~~~~l~~~~~-~~~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~~~ 856 (938)
..||.|++|.+-+|+ ++.-.. -.+ ..-.+|+|+.|+++...
T Consensus 110 a~~p~L~~Ltll~Np-v~~k~~YR~y--------------vl~klp~l~~LDF~kVt 151 (233)
T KOG1644|consen 110 ASCPKLEYLTLLGNP-VEHKKNYRLY--------------VLYKLPSLRTLDFQKVT 151 (233)
T ss_pred ccCCccceeeecCCc-hhcccCceeE--------------EEEecCcceEeehhhhh
Confidence 999999999999998 332211 111 02358899999887653
No 214
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=97.07 E-value=0.0004 Score=64.53 Aligned_cols=89 Identities=22% Similarity=0.246 Sum_probs=49.0
Q ss_pred EEEEccCCChHHHHHHHHhhhhhhhcccCeEEEEEeCCCCCHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHhcCceEE
Q 002308 180 ISIVGMGGIGKTTLAQLACNHVEVKREFDKTLWVCVSETFDEFRIAKAMLEALTGSTSNLNALQSLLISIDESIAGKRFL 259 (938)
Q Consensus 180 v~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~L 259 (938)
|.|+|++|+|||+||+.++.. .. ....-+.++...+..++....--. .. .....+ ..+...+ .+..+
T Consensus 2 vlL~G~~G~GKt~l~~~la~~--~~---~~~~~i~~~~~~~~~dl~g~~~~~-~~-~~~~~~-~~l~~a~-----~~~~i 68 (139)
T PF07728_consen 2 VLLVGPPGTGKTTLARELAAL--LG---RPVIRINCSSDTTEEDLIGSYDPS-NG-QFEFKD-GPLVRAM-----RKGGI 68 (139)
T ss_dssp EEEEESSSSSHHHHHHHHHHH--HT---CEEEEEE-TTTSTHHHHHCEEET--TT-TTCEEE--CCCTTH-----HEEEE
T ss_pred EEEECCCCCCHHHHHHHHHHH--hh---cceEEEEeccccccccceeeeeec-cc-cccccc-ccccccc-----cceeE
Confidence 689999999999999999984 32 234456777777777654322211 00 000000 0000000 17899
Q ss_pred EEEecCCCCCccChhHHHHhhh
Q 002308 260 LVLDDVWDGDYIKWEPFYRCLK 281 (938)
Q Consensus 260 lVlDdv~~~~~~~~~~l~~~l~ 281 (938)
+|||++...+...+..+...+.
T Consensus 69 l~lDEin~a~~~v~~~L~~ll~ 90 (139)
T PF07728_consen 69 LVLDEINRAPPEVLESLLSLLE 90 (139)
T ss_dssp EEESSCGG--HHHHHTTHHHHS
T ss_pred EEECCcccCCHHHHHHHHHHHh
Confidence 9999998665444455555544
No 215
>PRK08118 topology modulation protein; Reviewed
Probab=97.06 E-value=0.00028 Score=67.44 Aligned_cols=34 Identities=32% Similarity=0.671 Sum_probs=26.9
Q ss_pred EEEEEccCCChHHHHHHHHhhhhhhh-cccCeEEE
Q 002308 179 IISIVGMGGIGKTTLAQLACNHVEVK-REFDKTLW 212 (938)
Q Consensus 179 vv~i~G~~GiGKTtLa~~v~~~~~~~-~~f~~~~w 212 (938)
.|.|+|++|+||||||+.+++..... -+||..+|
T Consensus 3 rI~I~G~~GsGKSTlak~L~~~l~~~~~~lD~l~~ 37 (167)
T PRK08118 3 KIILIGSGGSGKSTLARQLGEKLNIPVHHLDALFW 37 (167)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCceecchhhc
Confidence 58999999999999999999854333 34676665
No 216
>CHL00095 clpC Clp protease ATP binding subunit
Probab=97.05 E-value=0.0029 Score=76.86 Aligned_cols=136 Identities=15% Similarity=0.206 Sum_probs=78.1
Q ss_pred CceecchhhHHHHHHHHhccCc---ccCCCeEEEEEEccCCChHHHHHHHHhhhhhhhcccCeEEEEEeCCCCCHHHHHH
Q 002308 150 EEICGRVGERNALLSMLLCESS---EQQKGLHIISIVGMGGIGKTTLAQLACNHVEVKREFDKTLWVCVSETFDEFRIAK 226 (938)
Q Consensus 150 ~~~vGr~~~~~~l~~~l~~~~~---~~~~~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~ 226 (938)
..++|.+..++.+...+..... ........+.++|+.|+|||+||+.++.. .-..-...+-++.+...+...+
T Consensus 509 ~~v~GQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKt~lA~~LA~~--l~~~~~~~~~~d~s~~~~~~~~-- 584 (821)
T CHL00095 509 KRIIGQDEAVVAVSKAIRRARVGLKNPNRPIASFLFSGPTGVGKTELTKALASY--FFGSEDAMIRLDMSEYMEKHTV-- 584 (821)
T ss_pred CcCcChHHHHHHHHHHHHHHhhcccCCCCCceEEEEECCCCCcHHHHHHHHHHH--hcCCccceEEEEchhccccccH--
Confidence 4689999999999888863321 11233456778999999999999999873 2111123344444432221111
Q ss_pred HHHHHhcCCCC--CCCcHHHHHHHHHHHhcCce-EEEEEecCCCCCccChhHHHHhhhCCC-----------CCcEEEEE
Q 002308 227 AMLEALTGSTS--NLNALQSLLISIDESIAGKR-FLLVLDDVWDGDYIKWEPFYRCLKKGL-----------HGSKILIT 292 (938)
Q Consensus 227 ~i~~~l~~~~~--~~~~~~~~~~~l~~~l~~~~-~LlVlDdv~~~~~~~~~~l~~~l~~~~-----------~gs~ilvT 292 (938)
..-++.++. +..... .+.+.++.++ -+++||+++..+...+..+...+..+. ..+-+|+|
T Consensus 585 --~~l~g~~~gyvg~~~~~----~l~~~~~~~p~~VvllDeieka~~~v~~~Llq~le~g~~~d~~g~~v~~~~~i~I~T 658 (821)
T CHL00095 585 --SKLIGSPPGYVGYNEGG----QLTEAVRKKPYTVVLFDEIEKAHPDIFNLLLQILDDGRLTDSKGRTIDFKNTLIIMT 658 (821)
T ss_pred --HHhcCCCCcccCcCccc----hHHHHHHhCCCeEEEECChhhCCHHHHHHHHHHhccCceecCCCcEEecCceEEEEe
Confidence 111121111 111112 2333444444 589999998887777777777776542 34446666
Q ss_pred cCC
Q 002308 293 TRK 295 (938)
Q Consensus 293 tr~ 295 (938)
|..
T Consensus 659 sn~ 661 (821)
T CHL00095 659 SNL 661 (821)
T ss_pred CCc
Confidence 654
No 217
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.05 E-value=0.006 Score=61.66 Aligned_cols=80 Identities=15% Similarity=0.314 Sum_probs=51.5
Q ss_pred eEEEEEEccCCChHHHHHHHHhhhhhh--hcccCeEEEEEeCCCCCHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHhc
Q 002308 177 LHIISIVGMGGIGKTTLAQLACNHVEV--KREFDKTLWVCVSETFDEFRIAKAMLEALTGSTSNLNALQSLLISIDESIA 254 (938)
Q Consensus 177 ~~vv~i~G~~GiGKTtLa~~v~~~~~~--~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~ 254 (938)
.++|.++|++|.|||+|+++.+....+ .+.|.....+.+.. +.+...+..+. ..-+..+.+.|++.+.
T Consensus 177 NRliLlhGPPGTGKTSLCKaLaQkLSIR~~~~y~~~~liEins--------hsLFSKWFsES--gKlV~kmF~kI~ELv~ 246 (423)
T KOG0744|consen 177 NRLILLHGPPGTGKTSLCKALAQKLSIRTNDRYYKGQLIEINS--------HSLFSKWFSES--GKLVAKMFQKIQELVE 246 (423)
T ss_pred eeEEEEeCCCCCChhHHHHHHHHhheeeecCccccceEEEEeh--------hHHHHHHHhhh--hhHHHHHHHHHHHHHh
Confidence 489999999999999999999997533 34555555554433 23444444322 2234556667777776
Q ss_pred Cce--EEEEEecCC
Q 002308 255 GKR--FLLVLDDVW 266 (938)
Q Consensus 255 ~~~--~LlVlDdv~ 266 (938)
++. +++.+|.|.
T Consensus 247 d~~~lVfvLIDEVE 260 (423)
T KOG0744|consen 247 DRGNLVFVLIDEVE 260 (423)
T ss_pred CCCcEEEEEeHHHH
Confidence 554 456688883
No 218
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=97.04 E-value=0.00094 Score=65.06 Aligned_cols=131 Identities=23% Similarity=0.220 Sum_probs=64.0
Q ss_pred cchhhHHHHHHHHhccCcccCCCeEEEEEEccCCChHHHHHHHHhhhhhhhcccCeEEEEEeCCC--C-------CHHH-
Q 002308 154 GRVGERNALLSMLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNHVEVKREFDKTLWVCVSET--F-------DEFR- 223 (938)
Q Consensus 154 Gr~~~~~~l~~~l~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~--~-------~~~~- 223 (938)
.+..+.....+++.. ..++.+.|++|.|||.||.+.+.+.-..+.|+.++++.-.-+ . +..+
T Consensus 4 p~~~~Q~~~~~al~~--------~~~v~~~G~AGTGKT~LA~a~Al~~v~~g~~~kiii~Rp~v~~~~~lGflpG~~~eK 75 (205)
T PF02562_consen 4 PKNEEQKFALDALLN--------NDLVIVNGPAGTGKTFLALAAALELVKEGEYDKIIITRPPVEAGEDLGFLPGDLEEK 75 (205)
T ss_dssp --SHHHHHHHHHHHH---------SEEEEE--TTSSTTHHHHHHHHHHHHTTS-SEEEEEE-S--TT----SS-------
T ss_pred CCCHHHHHHHHHHHh--------CCeEEEECCCCCcHHHHHHHHHHHHHHhCCCcEEEEEecCCCCccccccCCCCHHHH
Confidence 445566667777762 348999999999999999999887655678888877742111 0 0000
Q ss_pred ---HHHHHHHHhcCCCCCCCcHHHHHHHH------HHHhcCc---eEEEEEecCCCCCccChhHHHHhhhCCCCCcEEEE
Q 002308 224 ---IAKAMLEALTGSTSNLNALQSLLISI------DESIAGK---RFLLVLDDVWDGDYIKWEPFYRCLKKGLHGSKILI 291 (938)
Q Consensus 224 ---~~~~i~~~l~~~~~~~~~~~~~~~~l------~~~l~~~---~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilv 291 (938)
-+.-+...+..-. .....+.....= -..++|+ ..+||+|++.+....+ +...+-..+.|||||+
T Consensus 76 ~~p~~~p~~d~l~~~~-~~~~~~~~~~~~~Ie~~~~~~iRGrt~~~~~iIvDEaQN~t~~~---~k~ilTR~g~~skii~ 151 (205)
T PF02562_consen 76 MEPYLRPIYDALEELF-GKEKLEELIQNGKIEIEPLAFIRGRTFDNAFIIVDEAQNLTPEE---LKMILTRIGEGSKIII 151 (205)
T ss_dssp --TTTHHHHHHHTTTS--TTCHHHHHHTTSEEEEEGGGGTT--B-SEEEEE-SGGG--HHH---HHHHHTTB-TT-EEEE
T ss_pred HHHHHHHHHHHHHHHh-ChHhHHHHhhcCeEEEEehhhhcCccccceEEEEecccCCCHHH---HHHHHcccCCCcEEEE
Confidence 1111222221110 111122211100 0133453 4699999997765444 4444555568999999
Q ss_pred EcCCh
Q 002308 292 TTRKE 296 (938)
Q Consensus 292 Ttr~~ 296 (938)
+--..
T Consensus 152 ~GD~~ 156 (205)
T PF02562_consen 152 TGDPS 156 (205)
T ss_dssp EE---
T ss_pred ecCce
Confidence 87644
No 219
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=97.01 E-value=0.023 Score=60.82 Aligned_cols=181 Identities=13% Similarity=0.122 Sum_probs=102.6
Q ss_pred hHHHHHHHHhccCcccCCCeEEEEEEccCCChHHHHHHHHhhhhhhhcccCeEEEEEeCCCCCHHHHHHHHHHH------
Q 002308 158 ERNALLSMLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNHVEVKREFDKTLWVCVSETFDEFRIAKAMLEA------ 231 (938)
Q Consensus 158 ~~~~l~~~l~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~------ 231 (938)
.-+++...+..+ .-.+-..++|+.|+||+++|..++...--...-+. ..++.=..-+.+...
T Consensus 10 ~~~~l~~~~~~~-----rl~HA~Lf~G~~G~Gk~~lA~~~A~~LlC~~~~~~-------~~Cg~C~sC~~~~~g~HPD~~ 77 (334)
T PRK07993 10 DYEQLVGSYQAG-----RGHHALLIQALPGMGDDALIYALSRWLMCQQPQGH-------KSCGHCRGCQLMQAGTHPDYY 77 (334)
T ss_pred HHHHHHHHHHcC-----CcceEEeeECCCCCCHHHHHHHHHHHHcCCCCCCC-------CCCCCCHHHHHHHcCCCCCEE
Confidence 345566666542 34577889999999999999998774211000000 000000000111000
Q ss_pred -hcCCCC-CCCcHHHHHHHHHHH----hcCceEEEEEecCCCCCccChhHHHHhhhCCCCCcEEEEEcCCh-hhhhh-hc
Q 002308 232 -LTGSTS-NLNALQSLLISIDES----IAGKRFLLVLDDVWDGDYIKWEPFYRCLKKGLHGSKILITTRKE-SIVSM-MR 303 (938)
Q Consensus 232 -l~~~~~-~~~~~~~~~~~l~~~----l~~~~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtr~~-~v~~~-~~ 303 (938)
+..... ....+++.....+.. ..+++=++|+|+++.........++..+..-..++.+|++|.+. .+... .+
T Consensus 78 ~i~p~~~~~~I~idqiR~l~~~~~~~~~~g~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~lLpTIrS 157 (334)
T PRK07993 78 TLTPEKGKSSLGVDAVREVTEKLYEHARLGGAKVVWLPDAALLTDAAANALLKTLEEPPENTWFFLACREPARLLATLRS 157 (334)
T ss_pred EEecccccccCCHHHHHHHHHHHhhccccCCceEEEEcchHhhCHHHHHHHHHHhcCCCCCeEEEEEECChhhChHHHHh
Confidence 000000 112233333322221 12566689999998876667777888887766677666666654 44433 34
Q ss_pred CCceEeCCCCChHHHHHHHHHhhcCCCCCchhhHHHHHHHHHHHhcCCChhHHHHH
Q 002308 304 STDIISIEELAEEECWVLFKRLAFFGRSTEECEKLEQIGQRIARKCKGLPLAAKTM 359 (938)
Q Consensus 304 ~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~~ 359 (938)
..+.+.+.+++.+++.+.+..... .. .+.+..+++.++|.|.....+
T Consensus 158 RCq~~~~~~~~~~~~~~~L~~~~~-----~~----~~~a~~~~~la~G~~~~Al~l 204 (334)
T PRK07993 158 RCRLHYLAPPPEQYALTWLSREVT-----MS----QDALLAALRLSAGAPGAALAL 204 (334)
T ss_pred ccccccCCCCCHHHHHHHHHHccC-----CC----HHHHHHHHHHcCCCHHHHHHH
Confidence 567899999999999888765321 11 112567889999999754433
No 220
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=97.01 E-value=0.0037 Score=71.63 Aligned_cols=170 Identities=19% Similarity=0.235 Sum_probs=88.7
Q ss_pred CceecchhhHHHHHHHHhccCcccCCCeEEEEEEccCCChHHHHHHHHhhhhhhh--cccC-eEEEEEeCC---CCCHHH
Q 002308 150 EEICGRVGERNALLSMLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNHVEVK--REFD-KTLWVCVSE---TFDEFR 223 (938)
Q Consensus 150 ~~~vGr~~~~~~l~~~l~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~v~~~~~~~--~~f~-~~~wv~~~~---~~~~~~ 223 (938)
+.++|.+..++.+...+... ....+.|+|++|+|||++|+.+++..... ..|. ..-|+.+.. .++.+.
T Consensus 65 ~~iiGqs~~i~~l~~al~~~------~~~~vLi~Ge~GtGKt~lAr~i~~~~~~~~~s~~~~~~~fi~id~~~~~~~~~~ 138 (531)
T TIGR02902 65 DEIIGQEEGIKALKAALCGP------NPQHVIIYGPPGVGKTAAARLVLEEAKKNPASPFKEGAAFVEIDATTARFDERG 138 (531)
T ss_pred HHeeCcHHHHHHHHHHHhCC------CCceEEEECCCCCCHHHHHHHHHHHhhhccCCCcCCCCCEEEEccccccCCccc
Confidence 46899999999998876532 33467899999999999999998642211 1232 122333321 122222
Q ss_pred HHHHHHHHhcCCC------CCCCcHHHHHHHHHHHhcCceEEEEEecCCCCCccChhHHHHhhhCC--------------
Q 002308 224 IAKAMLEALTGST------SNLNALQSLLISIDESIAGKRFLLVLDDVWDGDYIKWEPFYRCLKKG-------------- 283 (938)
Q Consensus 224 ~~~~i~~~l~~~~------~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~~~~~~~l~~~l~~~-------------- 283 (938)
+...++....... .......+. .....-+...=.|++|++...+......+...+...
T Consensus 139 ~~~~li~~~~~p~~~~~~~~g~~g~~~~--~~G~l~~a~gG~L~IdEI~~L~~~~q~~LL~~Le~~~~~~~~~~~~~~~~ 216 (531)
T TIGR02902 139 IADPLIGSVHDPIYQGAGPLGIAGIPQP--KPGAVTRAHGGVLFIDEIGELHPVQMNKLLKVLEDRKVFLDSAYYNSENP 216 (531)
T ss_pred cchhhcCCcccchhccccccccCCcccc--cCchhhccCCcEEEEechhhCCHHHHHHHHHHHHhCeeeeccccccccCc
Confidence 2212211100000 000000000 000001223457899999887666666666554321
Q ss_pred --------------CCCcEEEEE-cCChh-hhhhh-cCCceEeCCCCChHHHHHHHHHhhc
Q 002308 284 --------------LHGSKILIT-TRKES-IVSMM-RSTDIISIEELAEEECWVLFKRLAF 327 (938)
Q Consensus 284 --------------~~gs~ilvT-tr~~~-v~~~~-~~~~~~~l~~L~~~~~~~lf~~~~~ 327 (938)
....++|.+ |++.. +.... .....+.+.+++.++..+++...+.
T Consensus 217 ~~~~~~~~~~~~~~~~d~rlI~ATt~~p~~L~paLrsR~~~I~f~pL~~eei~~Il~~~a~ 277 (531)
T TIGR02902 217 NIPSHIHDIFQNGLPADFRLIGATTRNPEEIPPALRSRCVEIFFRPLLDEEIKEIAKNAAE 277 (531)
T ss_pred ccccchhhhcccCcccceEEEEEecCCcccCChHHhhhhheeeCCCCCHHHHHHHHHHHHH
Confidence 112366654 44432 11111 2235678889998888888887663
No 221
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=97.00 E-value=0.019 Score=59.41 Aligned_cols=178 Identities=17% Similarity=0.143 Sum_probs=98.3
Q ss_pred CceecchhhHHHHHHHHhccCcc-------cCCCeEEEEEEccCCChHHHHHHHHhhhhhhhcccCeEEEEEeCCCCCHH
Q 002308 150 EEICGRVGERNALLSMLLCESSE-------QQKGLHIISIVGMGGIGKTTLAQLACNHVEVKREFDKTLWVCVSETFDEF 222 (938)
Q Consensus 150 ~~~vGr~~~~~~l~~~l~~~~~~-------~~~~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~ 222 (938)
..+=|-++.+++|.+...-+-.. +=..++=|.+||++|.|||-||++|++. .... |+-|..+
T Consensus 151 ~dIGGL~~Qi~EirE~VELPL~~PElF~~~GI~PPKGVLLYGPPGTGKTLLAkAVA~~--T~At-----FIrvvgS---- 219 (406)
T COG1222 151 EDIGGLDEQIQEIREVVELPLKNPELFEELGIDPPKGVLLYGPPGTGKTLLAKAVANQ--TDAT-----FIRVVGS---- 219 (406)
T ss_pred hhccCHHHHHHHHHHHhcccccCHHHHHHcCCCCCCceEeeCCCCCcHHHHHHHHHhc--cCce-----EEEeccH----
Confidence 34566788888888876543210 1235677899999999999999999993 4333 3444331
Q ss_pred HHHHHHHHHhcCCCCCCCcHHHHHHHHHHHhc-CceEEEEEecCCC-----------CC---ccChhHHHHhhhCC--CC
Q 002308 223 RIAKAMLEALTGSTSNLNALQSLLISIDESIA-GKRFLLVLDDVWD-----------GD---YIKWEPFYRCLKKG--LH 285 (938)
Q Consensus 223 ~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~-~~~~LlVlDdv~~-----------~~---~~~~~~l~~~l~~~--~~ 285 (938)
++.+..-+. ...+.+.+-+.-+ ..+..|++|.++. .+ +...-+++.-+..+ ..
T Consensus 220 ----ElVqKYiGE------GaRlVRelF~lArekaPsIIFiDEIDAIg~kR~d~~t~gDrEVQRTmleLL~qlDGFD~~~ 289 (406)
T COG1222 220 ----ELVQKYIGE------GARLVRELFELAREKAPSIIFIDEIDAIGAKRFDSGTSGDREVQRTMLELLNQLDGFDPRG 289 (406)
T ss_pred ----HHHHHHhcc------chHHHHHHHHHHhhcCCeEEEEechhhhhcccccCCCCchHHHHHHHHHHHHhccCCCCCC
Confidence 222222111 1222333333333 4688999998732 11 11122333334333 23
Q ss_pred CcEEEEEcCChhhhhhh-----cCCceEeCCCCChHHHHHHHHHhhcCCCCCchhhHHHHHHHHHHHhcCCCh
Q 002308 286 GSKILITTRKESIVSMM-----RSTDIISIEELAEEECWVLFKRLAFFGRSTEECEKLEQIGQRIARKCKGLP 353 (938)
Q Consensus 286 gs~ilvTtr~~~v~~~~-----~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~P 353 (938)
.-|||.+|...++.... .-...+++..=+.+.-.++|.-++..-.. ...-+ .+.+++.+.|.-
T Consensus 290 nvKVI~ATNR~D~LDPALLRPGR~DRkIEfplPd~~gR~~Il~IHtrkM~l-~~dvd----~e~la~~~~g~s 357 (406)
T COG1222 290 NVKVIMATNRPDILDPALLRPGRFDRKIEFPLPDEEGRAEILKIHTRKMNL-ADDVD----LELLARLTEGFS 357 (406)
T ss_pred CeEEEEecCCccccChhhcCCCcccceeecCCCCHHHHHHHHHHHhhhccC-ccCcC----HHHHHHhcCCCc
Confidence 46899888776554431 22557787744555556677776532221 11222 346666666654
No 222
>PRK12608 transcription termination factor Rho; Provisional
Probab=97.00 E-value=0.0066 Score=64.49 Aligned_cols=102 Identities=16% Similarity=0.139 Sum_probs=64.5
Q ss_pred hHHHHHHHHhccCcccCCCeEEEEEEccCCChHHHHHHHHhhhhhhhccc-Ce-EEEEEeCC-CCCHHHHHHHHHHHhcC
Q 002308 158 ERNALLSMLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNHVEVKREF-DK-TLWVCVSE-TFDEFRIAKAMLEALTG 234 (938)
Q Consensus 158 ~~~~l~~~l~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f-~~-~~wv~~~~-~~~~~~~~~~i~~~l~~ 234 (938)
...++++.+..-. ....+.|+|.+|+|||||++.+++. +.... +. ++|+.+.+ ...+.++.+.+...+..
T Consensus 119 ~~~RvID~l~PiG-----kGQR~LIvG~pGtGKTTLl~~la~~--i~~~~~dv~~vv~lIgER~~EV~df~~~i~~~Vva 191 (380)
T PRK12608 119 LSMRVVDLVAPIG-----KGQRGLIVAPPRAGKTVLLQQIAAA--VAANHPEVHLMVLLIDERPEEVTDMRRSVKGEVYA 191 (380)
T ss_pred hhHhhhhheeecC-----CCceEEEECCCCCCHHHHHHHHHHH--HHhcCCCceEEEEEecCCCCCHHHHHHHHhhhEEe
Confidence 3445777776432 3356799999999999999999884 33322 33 36666654 55778888888887765
Q ss_pred CCCCCCcHHH-----HHHHHHHHh--cCceEEEEEecCC
Q 002308 235 STSNLNALQS-----LLISIDESI--AGKRFLLVLDDVW 266 (938)
Q Consensus 235 ~~~~~~~~~~-----~~~~l~~~l--~~~~~LlVlDdv~ 266 (938)
...+...... ....+.+++ ++++++||+|++.
T Consensus 192 st~de~~~~~~~v~~~~~~~Ae~f~~~GkdVVLvlDslt 230 (380)
T PRK12608 192 STFDRPPDEHIRVAELVLERAKRLVEQGKDVVILLDSLT 230 (380)
T ss_pred ecCCCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEEeCcH
Confidence 4322222111 111222222 4899999999994
No 223
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=96.97 E-value=0.0027 Score=60.54 Aligned_cols=132 Identities=19% Similarity=0.149 Sum_probs=68.0
Q ss_pred eecchhhHHHHHHHHhccCcccCCCeEEEEEEccCCChHHHHHHHHhhhhhhhcccCeEEEEEeCCCCCHHHHHHHHHHH
Q 002308 152 ICGRVGERNALLSMLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNHVEVKREFDKTLWVCVSETFDEFRIAKAMLEA 231 (938)
Q Consensus 152 ~vGr~~~~~~l~~~l~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~ 231 (938)
++|....+.++.+.+..-.. ....|.|+|..|+||+.+|+.+++... ..-...+-|+++.- +.+.+-.++.-.
T Consensus 1 liG~s~~m~~~~~~~~~~a~----~~~pVlI~GE~GtGK~~lA~~IH~~s~--r~~~pfi~vnc~~~-~~~~~e~~LFG~ 73 (168)
T PF00158_consen 1 LIGESPAMKRLREQAKRAAS----SDLPVLITGETGTGKELLARAIHNNSP--RKNGPFISVNCAAL-PEELLESELFGH 73 (168)
T ss_dssp SS--SHHHHHHHHHHHHHTT----STS-EEEECSTTSSHHHHHHHHHHCST--TTTS-EEEEETTTS--HHHHHHHHHEB
T ss_pred CEeCCHHHHHHHHHHHHHhC----CCCCEEEEcCCCCcHHHHHHHHHHhhh--cccCCeEEEehhhh-hcchhhhhhhcc
Confidence 46777888888887765432 235678999999999999999988421 11123344455432 333222222221
Q ss_pred hcCCCCCCCcHHHHHHHHHHHhcCceEEEEEecCCCCCccChhHHHHhhhCCC-----------CCcEEEEEcCC
Q 002308 232 LTGSTSNLNALQSLLISIDESIAGKRFLLVLDDVWDGDYIKWEPFYRCLKKGL-----------HGSKILITTRK 295 (938)
Q Consensus 232 l~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~~~~~~~l~~~l~~~~-----------~gs~ilvTtr~ 295 (938)
-.+...+..... ...+.+ ...=-|+||++.......-..+...+..+. ...|||.||..
T Consensus 74 ~~~~~~~~~~~~--~G~l~~---A~~GtL~Ld~I~~L~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiI~st~~ 143 (168)
T PF00158_consen 74 EKGAFTGARSDK--KGLLEQ---ANGGTLFLDEIEDLPPELQAKLLRVLEEGKFTRLGSDKPVPVDVRIIASTSK 143 (168)
T ss_dssp CSSSSTTTSSEB--EHHHHH---TTTSEEEEETGGGS-HHHHHHHHHHHHHSEEECCTSSSEEE--EEEEEEESS
T ss_pred cccccccccccc--CCceee---ccceEEeecchhhhHHHHHHHHHHHHhhchhccccccccccccceEEeecCc
Confidence 111111111100 011221 122367899998776555566666665321 25688888874
No 224
>PRK04132 replication factor C small subunit; Provisional
Probab=96.95 E-value=0.021 Score=67.83 Aligned_cols=155 Identities=12% Similarity=0.026 Sum_probs=98.2
Q ss_pred cCCChHHHHHHHHhhhhhhhccc-CeEEEEEeCCCCCHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHhcCceEEEEEe
Q 002308 185 MGGIGKTTLAQLACNHVEVKREF-DKTLWVCVSETFDEFRIAKAMLEALTGSTSNLNALQSLLISIDESIAGKRFLLVLD 263 (938)
Q Consensus 185 ~~GiGKTtLa~~v~~~~~~~~~f-~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlD 263 (938)
|.++||||+|..+++.. ..+.+ ..++-++++...++..+ ++++..+....+. -..+.-++|+|
T Consensus 574 Ph~lGKTT~A~ala~~l-~g~~~~~~~lElNASd~rgid~I-R~iIk~~a~~~~~--------------~~~~~KVvIID 637 (846)
T PRK04132 574 PTVLHNTTAALALAREL-FGENWRHNFLELNASDERGINVI-REKVKEFARTKPI--------------GGASFKIIFLD 637 (846)
T ss_pred CCcccHHHHHHHHHHhh-hcccccCeEEEEeCCCcccHHHH-HHHHHHHHhcCCc--------------CCCCCEEEEEE
Confidence 78899999999999852 22233 24667777765555433 3333332211000 01245799999
Q ss_pred cCCCCCccChhHHHHhhhCCCCCcEEEEEcCCh-hhhhh-hcCCceEeCCCCChHHHHHHHHHhhcCCCCCchhhHHHHH
Q 002308 264 DVWDGDYIKWEPFYRCLKKGLHGSKILITTRKE-SIVSM-MRSTDIISIEELAEEECWVLFKRLAFFGRSTEECEKLEQI 341 (938)
Q Consensus 264 dv~~~~~~~~~~l~~~l~~~~~gs~ilvTtr~~-~v~~~-~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~ 341 (938)
+++.........+...+..-...+++|++|.+. .+... .+.+..+.+.+++.++-...+...+...+.... .+.
T Consensus 638 EaD~Lt~~AQnALLk~lEep~~~~~FILi~N~~~kIi~tIrSRC~~i~F~~ls~~~i~~~L~~I~~~Egi~i~----~e~ 713 (846)
T PRK04132 638 EADALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQSRCAIFRFRPLRDEDIAKRLRYIAENEGLELT----EEG 713 (846)
T ss_pred CcccCCHHHHHHHHHHhhCCCCCeEEEEEeCChhhCchHHhhhceEEeCCCCCHHHHHHHHHHHHHhcCCCCC----HHH
Confidence 999877667777888877655566666666554 33333 244679999999999998888776543222111 234
Q ss_pred HHHHHHhcCCChhHHHHH
Q 002308 342 GQRIARKCKGLPLAAKTM 359 (938)
Q Consensus 342 ~~~i~~~~~g~Plai~~~ 359 (938)
...|++.++|.+..+..+
T Consensus 714 L~~Ia~~s~GDlR~AIn~ 731 (846)
T PRK04132 714 LQAILYIAEGDMRRAINI 731 (846)
T ss_pred HHHHHHHcCCCHHHHHHH
Confidence 778999999988555433
No 225
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=96.94 E-value=0.0057 Score=59.29 Aligned_cols=122 Identities=20% Similarity=0.223 Sum_probs=73.7
Q ss_pred CCCceecchhhHHHHHHHHhccCcccCCCeEEEEEEccCCChHHHHHHHHhhhhhhhcccCeEEEEEeCCCCCHHHHHHH
Q 002308 148 DEEEICGRVGERNALLSMLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNHVEVKREFDKTLWVCVSETFDEFRIAKA 227 (938)
Q Consensus 148 ~~~~~vGr~~~~~~l~~~l~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~ 227 (938)
+-..++|.+...+.+.+--..-.. +....-|.+||.-|+|||+|++++.+ .+.+..-. -|.|.+.
T Consensus 58 ~L~~l~Gvd~qk~~L~~NT~~F~~--G~pANnVLLwGaRGtGKSSLVKA~~~--e~~~~glr--LVEV~k~--------- 122 (287)
T COG2607 58 DLADLVGVDRQKEALVRNTEQFAE--GLPANNVLLWGARGTGKSSLVKALLN--EYADEGLR--LVEVDKE--------- 122 (287)
T ss_pred CHHHHhCchHHHHHHHHHHHHHHc--CCcccceEEecCCCCChHHHHHHHHH--HHHhcCCe--EEEEcHH---------
Confidence 334689988888877663322111 33456789999999999999999998 45444433 2333321
Q ss_pred HHHHhcCCCCCCCcHHHHHHHHHHHhcCceEEEEEecCCC-CCccChhHHHHhhhCC---CCCcEEEEEcCCh
Q 002308 228 MLEALTGSTSNLNALQSLLISIDESIAGKRFLLVLDDVWD-GDYIKWEPFYRCLKKG---LHGSKILITTRKE 296 (938)
Q Consensus 228 i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~-~~~~~~~~l~~~l~~~---~~gs~ilvTtr~~ 296 (938)
+..++..+...++ ....||.|..||+.- .+...+..+.+.+..+ .|...++..|.++
T Consensus 123 ----------dl~~Lp~l~~~Lr--~~~~kFIlFcDDLSFe~gd~~yK~LKs~LeG~ve~rP~NVl~YATSNR 183 (287)
T COG2607 123 ----------DLATLPDLVELLR--ARPEKFILFCDDLSFEEGDDAYKALKSALEGGVEGRPANVLFYATSNR 183 (287)
T ss_pred ----------HHhhHHHHHHHHh--cCCceEEEEecCCCCCCCchHHHHHHHHhcCCcccCCCeEEEEEecCC
Confidence 1112222222221 236799999999853 2345677888888764 3444455555554
No 226
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=96.93 E-value=0.0016 Score=72.30 Aligned_cols=188 Identities=16% Similarity=0.157 Sum_probs=111.4
Q ss_pred CceecchhhHHHHHHHHhccCcccCCCeEEEEEEccCCChHHHHHHHHhhhhhhhcccCeEEEEEeCCCCCHHHHHHHHH
Q 002308 150 EEICGRVGERNALLSMLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNHVEVKREFDKTLWVCVSETFDEFRIAKAML 229 (938)
Q Consensus 150 ~~~vGr~~~~~~l~~~l~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 229 (938)
+++||.+.....+...+.... -.+--...|+-|+||||+|+-++.-.--.. + ....++..-...+.|-
T Consensus 16 ~evvGQe~v~~~L~nal~~~r-----i~hAYlfsG~RGvGKTt~Ari~AkalNC~~------~-~~~ePC~~C~~Ck~I~ 83 (515)
T COG2812 16 DDVVGQEHVVKTLSNALENGR-----IAHAYLFSGPRGVGKTTIARILAKALNCEN------G-PTAEPCGKCISCKEIN 83 (515)
T ss_pred HHhcccHHHHHHHHHHHHhCc-----chhhhhhcCCCCcCchhHHHHHHHHhcCCC------C-CCCCcchhhhhhHhhh
Confidence 467999999999999997543 334456789999999999998887421111 0 1111111111112222
Q ss_pred HHh-----cCCCCCCCcHHHHHHHHHHHh-----cCceEEEEEecCCCCCccChhHHHHhhhCCCCCcEEEEEcCCh-hh
Q 002308 230 EAL-----TGSTSNLNALQSLLISIDESI-----AGKRFLLVLDDVWDGDYIKWEPFYRCLKKGLHGSKILITTRKE-SI 298 (938)
Q Consensus 230 ~~l-----~~~~~~~~~~~~~~~~l~~~l-----~~~~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtr~~-~v 298 (938)
.-- .........+++... |.+.. +++.=+.|+|.|+-.+...|..++.-+..-....+.|+.|++. .+
T Consensus 84 ~g~~~DviEiDaASn~gVddiR~-i~e~v~y~P~~~ryKVyiIDEvHMLS~~afNALLKTLEEPP~hV~FIlATTe~~Ki 162 (515)
T COG2812 84 EGSLIDVIEIDAASNTGVDDIRE-IIEKVNYAPSEGRYKVYIIDEVHMLSKQAFNALLKTLEEPPSHVKFILATTEPQKI 162 (515)
T ss_pred cCCcccchhhhhhhccChHHHHH-HHHHhccCCccccceEEEEecHHhhhHHHHHHHhcccccCccCeEEEEecCCcCcC
Confidence 110 000001112222222 22222 2444589999998777778888888777655666666666654 33
Q ss_pred hhh-hcCCceEeCCCCChHHHHHHHHHhhcCCCCCchhhHHHHHHHHHHHhcCCChh
Q 002308 299 VSM-MRSTDIISIEELAEEECWVLFKRLAFFGRSTEECEKLEQIGQRIARKCKGLPL 354 (938)
Q Consensus 299 ~~~-~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl 354 (938)
... .+.++.+.++.++.++-...+...+......... +....|++...|...
T Consensus 163 p~TIlSRcq~f~fkri~~~~I~~~L~~i~~~E~I~~e~----~aL~~ia~~a~Gs~R 215 (515)
T COG2812 163 PNTILSRCQRFDFKRLDLEEIAKHLAAILDKEGINIEE----DALSLIARAAEGSLR 215 (515)
T ss_pred chhhhhccccccccCCCHHHHHHHHHHHHHhcCCccCH----HHHHHHHHHcCCChh
Confidence 333 4557899999999999998888877544433332 234566666666544
No 227
>PRK07261 topology modulation protein; Provisional
Probab=96.93 E-value=0.0024 Score=61.34 Aligned_cols=22 Identities=45% Similarity=0.711 Sum_probs=19.9
Q ss_pred EEEEEccCCChHHHHHHHHhhh
Q 002308 179 IISIVGMGGIGKTTLAQLACNH 200 (938)
Q Consensus 179 vv~i~G~~GiGKTtLa~~v~~~ 200 (938)
.|.|+|++|+||||||+.+...
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~ 23 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQH 23 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHH
Confidence 4899999999999999998764
No 228
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.90 E-value=0.016 Score=62.57 Aligned_cols=131 Identities=19% Similarity=0.245 Sum_probs=77.1
Q ss_pred CCCeEEEEEEccCCChHHHHHHHHhhhhhhhcccCeEEEEEeCCCCCHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHh
Q 002308 174 QKGLHIISIVGMGGIGKTTLAQLACNHVEVKREFDKTLWVCVSETFDEFRIAKAMLEALTGSTSNLNALQSLLISIDESI 253 (938)
Q Consensus 174 ~~~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l 253 (938)
..+...+.+.|++|+|||+||..++.. ..|..+=-++...-.... +............+..
T Consensus 535 ~s~lvSvLl~Gp~~sGKTaLAA~iA~~----S~FPFvKiiSpe~miG~s---------------EsaKc~~i~k~F~DAY 595 (744)
T KOG0741|consen 535 RSPLVSVLLEGPPGSGKTALAAKIALS----SDFPFVKIISPEDMIGLS---------------ESAKCAHIKKIFEDAY 595 (744)
T ss_pred cCcceEEEEecCCCCChHHHHHHHHhh----cCCCeEEEeChHHccCcc---------------HHHHHHHHHHHHHHhh
Confidence 456788899999999999999999763 457655433321110000 0111112223334445
Q ss_pred cCceEEEEEecCCCCCccCh------------hHHHHhhhCCC-CCcE--EEEEcCChhhhhhhcC----CceEeCCCCC
Q 002308 254 AGKRFLLVLDDVWDGDYIKW------------EPFYRCLKKGL-HGSK--ILITTRKESIVSMMRS----TDIISIEELA 314 (938)
Q Consensus 254 ~~~~~LlVlDdv~~~~~~~~------------~~l~~~l~~~~-~gs~--ilvTtr~~~v~~~~~~----~~~~~l~~L~ 314 (938)
+..--.||+||+... .+| ..+...+.... .|-| |+-||....+...|+. ...+.+..++
T Consensus 596 kS~lsiivvDdiErL--iD~vpIGPRfSN~vlQaL~VllK~~ppkg~kLli~~TTS~~~vL~~m~i~~~F~~~i~Vpnl~ 673 (744)
T KOG0741|consen 596 KSPLSIIVVDDIERL--LDYVPIGPRFSNLVLQALLVLLKKQPPKGRKLLIFGTTSRREVLQEMGILDCFSSTIHVPNLT 673 (744)
T ss_pred cCcceEEEEcchhhh--hcccccCchhhHHHHHHHHHHhccCCCCCceEEEEecccHHHHHHHcCHHHhhhheeecCccC
Confidence 566679999999542 222 23333444332 3444 4446666777777754 3578899997
Q ss_pred h-HHHHHHHHHh
Q 002308 315 E-EECWVLFKRL 325 (938)
Q Consensus 315 ~-~~~~~lf~~~ 325 (938)
. ++..+.+...
T Consensus 674 ~~~~~~~vl~~~ 685 (744)
T KOG0741|consen 674 TGEQLLEVLEEL 685 (744)
T ss_pred chHHHHHHHHHc
Confidence 6 7777776664
No 229
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.90 E-value=0.0003 Score=69.12 Aligned_cols=109 Identities=24% Similarity=0.232 Sum_probs=60.1
Q ss_pred cccCCCCeeeecCCccccccccccCCCCccEEEcCCC--CCcccccccccccCccceeecCCCcccccCCcc---CCCCC
Q 002308 589 EKLVHLRYLNLSDQKIKKLPETLCELYNLEKLDISGC--SDLRELPKGIGKLINMKHLLNSGTRSLRYMPVG---IGRLT 663 (938)
Q Consensus 589 ~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~l~~~--~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~---l~~l~ 663 (938)
-.+..|+.|++.+..++.+- .+-.|++|++|+++.| .....++.-...+++|++|++++|.+.. +.. +..+.
T Consensus 40 d~~~~le~ls~~n~gltt~~-~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~--lstl~pl~~l~ 116 (260)
T KOG2739|consen 40 DEFVELELLSVINVGLTTLT-NFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKD--LSTLRPLKELE 116 (260)
T ss_pred ccccchhhhhhhccceeecc-cCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCcccc--ccccchhhhhc
Confidence 34455666666665554331 2334777777777777 4444555555666778888887774331 222 34556
Q ss_pred CCcccCeeEecCCCCCCCCcccccccccccccCcceee
Q 002308 664 GLRTLGEFHVSAGGGVDGSKACRLESLKNLEHLQVCCI 701 (938)
Q Consensus 664 ~L~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~ 701 (938)
+|..|++++|......... ...+.-+++|+.|+....
T Consensus 117 nL~~Ldl~n~~~~~l~dyr-e~vf~ll~~L~~LD~~dv 153 (260)
T KOG2739|consen 117 NLKSLDLFNCSVTNLDDYR-EKVFLLLPSLKYLDGCDV 153 (260)
T ss_pred chhhhhcccCCccccccHH-HHHHHHhhhhcccccccc
Confidence 6666777666554411111 122444566666655443
No 230
>PRK06835 DNA replication protein DnaC; Validated
Probab=96.90 E-value=0.0027 Score=67.43 Aligned_cols=102 Identities=19% Similarity=0.302 Sum_probs=56.2
Q ss_pred EEEEEEccCCChHHHHHHHHhhhhhhhcccCeEEEEEeCCCCCHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHhcCce
Q 002308 178 HIISIVGMGGIGKTTLAQLACNHVEVKREFDKTLWVCVSETFDEFRIAKAMLEALTGSTSNLNALQSLLISIDESIAGKR 257 (938)
Q Consensus 178 ~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~ 257 (938)
.-+.++|..|+|||.||.++++... ... ..++|+++. +++..+...-.. ...+.... + +.+.+ -
T Consensus 184 ~~Lll~G~~GtGKThLa~aIa~~l~-~~g-~~V~y~t~~------~l~~~l~~~~~~---~~~~~~~~---~-~~l~~-~ 247 (329)
T PRK06835 184 ENLLFYGNTGTGKTFLSNCIAKELL-DRG-KSVIYRTAD------ELIEILREIRFN---NDKELEEV---Y-DLLIN-C 247 (329)
T ss_pred CcEEEECCCCCcHHHHHHHHHHHHH-HCC-CeEEEEEHH------HHHHHHHHHHhc---cchhHHHH---H-HHhcc-C
Confidence 5699999999999999999999532 222 356666543 333333322111 11111111 2 22222 2
Q ss_pred EEEEEecCCCCCccChh--HHHHhhhCC-CCCcEEEEEcCC
Q 002308 258 FLLVLDDVWDGDYIKWE--PFYRCLKKG-LHGSKILITTRK 295 (938)
Q Consensus 258 ~LlVlDdv~~~~~~~~~--~l~~~l~~~-~~gs~ilvTtr~ 295 (938)
=||||||+.......|. .+...+... ..+-.+||||..
T Consensus 248 DLLIIDDlG~e~~t~~~~~~Lf~iin~R~~~~k~tIiTSNl 288 (329)
T PRK06835 248 DLLIIDDLGTEKITEFSKSELFNLINKRLLRQKKMIISTNL 288 (329)
T ss_pred CEEEEeccCCCCCCHHHHHHHHHHHHHHHHCCCCEEEECCC
Confidence 38999999655433442 344444332 234558888874
No 231
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=96.90 E-value=0.004 Score=62.45 Aligned_cols=49 Identities=20% Similarity=0.276 Sum_probs=37.3
Q ss_pred CCeEEEEEEccCCChHHHHHHHHhhhhhhhcccCeEEEEEeCCCCCHHHHHH
Q 002308 175 KGLHIISIVGMGGIGKTTLAQLACNHVEVKREFDKTLWVCVSETFDEFRIAK 226 (938)
Q Consensus 175 ~~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~ 226 (938)
+...++.|+|++|+|||++|.+++.. ....-..++|++... ++...+.+
T Consensus 10 ~~g~i~~i~G~~GsGKT~l~~~~~~~--~~~~g~~v~yi~~e~-~~~~rl~~ 58 (209)
T TIGR02237 10 ERGTITQIYGPPGSGKTNICMILAVN--AARQGKKVVYIDTEG-LSPERFKQ 58 (209)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH--HHhCCCeEEEEECCC-CCHHHHHH
Confidence 35689999999999999999998874 333346789999876 66555443
No 232
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=96.88 E-value=0.0068 Score=56.49 Aligned_cols=116 Identities=17% Similarity=0.150 Sum_probs=65.0
Q ss_pred EEEEEEccCCChHHHHHHHHhhhhhhhcccCeEEEEEe---CCCCCHHHHHHHHHHHhc-----CCC-CCCCcH------
Q 002308 178 HIISIVGMGGIGKTTLAQLACNHVEVKREFDKTLWVCV---SETFDEFRIAKAMLEALT-----GST-SNLNAL------ 242 (938)
Q Consensus 178 ~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~---~~~~~~~~~~~~i~~~l~-----~~~-~~~~~~------ 242 (938)
..|-|++..|.||||+|...+... ....+ .+.++-. ........+++.+- .+. ... ....+.
T Consensus 3 G~i~vy~g~G~Gkt~~a~g~~~ra-~~~g~-~v~~vQFlKg~~~~gE~~~l~~l~-~v~~~~~g~~~~~~~~~~~~~~~~ 79 (159)
T cd00561 3 GLIQVYTGNGKGKTTAALGLALRA-LGHGY-RVGVVQFLKGGWKYGELKALERLP-NIEIHRMGRGFFWTTENDEEDIAA 79 (159)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHH-HHCCC-eEEEEEEeCCCCccCHHHHHHhCC-CcEEEECCCCCccCCCChHHHHHH
Confidence 478888889999999998887742 22233 3334332 22334444444331 010 000 000111
Q ss_pred -HHHHHHHHHHhcC-ceEEEEEecCCCC---CccChhHHHHhhhCCCCCcEEEEEcCCh
Q 002308 243 -QSLLISIDESIAG-KRFLLVLDDVWDG---DYIKWEPFYRCLKKGLHGSKILITTRKE 296 (938)
Q Consensus 243 -~~~~~~l~~~l~~-~~~LlVlDdv~~~---~~~~~~~l~~~l~~~~~gs~ilvTtr~~ 296 (938)
.+..+..++.+.. .-=|+|||++-.. .....+.+...+.....+.-||+|.|+.
T Consensus 80 a~~~~~~a~~~~~~~~~dLlVLDEi~~a~~~gli~~~~v~~ll~~rp~~~evIlTGr~~ 138 (159)
T cd00561 80 AAEGWAFAKEAIASGEYDLVILDEINYALGYGLLDVEEVVDLLKAKPEDLELVLTGRNA 138 (159)
T ss_pred HHHHHHHHHHHHhcCCCCEEEEechHhHhhCCCCCHHHHHHHHHcCCCCCEEEEECCCC
Confidence 1122233344444 4449999998432 3445677888888777788899999985
No 233
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=96.88 E-value=0.0015 Score=66.92 Aligned_cols=81 Identities=22% Similarity=0.238 Sum_probs=48.8
Q ss_pred eEEEEEEccCCChHHHHHHHHhhhhhhhcccCeEEEEEeCCCCCHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHhcCc
Q 002308 177 LHIISIVGMGGIGKTTLAQLACNHVEVKREFDKTLWVCVSETFDEFRIAKAMLEALTGSTSNLNALQSLLISIDESIAGK 256 (938)
Q Consensus 177 ~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~ 256 (938)
..-+.++|.+|+|||.||.++.+..- +..+ .+.++++ .+++.++...... .. ....+.+.+. +
T Consensus 105 ~~nl~l~G~~G~GKThLa~Ai~~~l~-~~g~-sv~f~~~------~el~~~Lk~~~~~----~~----~~~~l~~~l~-~ 167 (254)
T COG1484 105 GENLVLLGPPGVGKTHLAIAIGNELL-KAGI-SVLFITA------PDLLSKLKAAFDE----GR----LEEKLLRELK-K 167 (254)
T ss_pred CCcEEEECCCCCcHHHHHHHHHHHHH-HcCC-eEEEEEH------HHHHHHHHHHHhc----Cc----hHHHHHHHhh-c
Confidence 44689999999999999999999643 3333 4556553 3455555555432 11 1112222222 2
Q ss_pred eEEEEEecCCCCCccChh
Q 002308 257 RFLLVLDDVWDGDYIKWE 274 (938)
Q Consensus 257 ~~LlVlDdv~~~~~~~~~ 274 (938)
-=||||||+-......|.
T Consensus 168 ~dlLIiDDlG~~~~~~~~ 185 (254)
T COG1484 168 VDLLIIDDIGYEPFSQEE 185 (254)
T ss_pred CCEEEEecccCccCCHHH
Confidence 238999999765544554
No 234
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=96.86 E-value=0.0076 Score=65.39 Aligned_cols=144 Identities=16% Similarity=0.158 Sum_probs=85.3
Q ss_pred ceecchhhHHHHHHHHhccCcccCCCeEEEEEEccCCChHHHHHHHHhhhhhhhc-------------------ccCeEE
Q 002308 151 EICGRVGERNALLSMLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNHVEVKR-------------------EFDKTL 211 (938)
Q Consensus 151 ~~vGr~~~~~~l~~~l~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~-------------------~f~~~~ 211 (938)
.++|-+....++..+..... .....+.++|++|+||||+|..+++...-.. .++.+.
T Consensus 2 ~~~~~~~~~~~l~~~~~~~~----~~~halL~~Gp~G~Gktt~a~~lA~~l~~~~~~~~~~~~~~~~~~~~~~~~~~d~l 77 (325)
T COG0470 2 ELVPWQEAVKRLLVQALESG----RLPHALLFYGPPGVGKTTAALALAKELLCENPTGLLPCGHCRSCKLIPAGNHPDFL 77 (325)
T ss_pred CcccchhHHHHHHHHHHhcC----CCCceeeeeCCCCCCHHHHHHHHHHHHhCCCcccCCcccchhhhhHHhhcCCCceE
Confidence 35677777888888877432 2334599999999999999999998532111 123344
Q ss_pred EEEeCCCCC---HHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHhcCceEEEEEecCCCCCccChhHHHHhhhCCCCCcE
Q 002308 212 WVCVSETFD---EFRIAKAMLEALTGSTSNLNALQSLLISIDESIAGKRFLLVLDDVWDGDYIKWEPFYRCLKKGLHGSK 288 (938)
Q Consensus 212 wv~~~~~~~---~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ 288 (938)
.+..+.... ..+..+++.+....... .++.-++|+|+++......-..+...+......+.
T Consensus 78 el~~s~~~~~~i~~~~vr~~~~~~~~~~~----------------~~~~kviiidead~mt~~A~nallk~lEep~~~~~ 141 (325)
T COG0470 78 ELNPSDLRKIDIIVEQVRELAEFLSESPL----------------EGGYKVVIIDEADKLTEDAANALLKTLEEPPKNTR 141 (325)
T ss_pred EecccccCCCcchHHHHHHHHHHhccCCC----------------CCCceEEEeCcHHHHhHHHHHHHHHHhccCCCCeE
Confidence 444444333 22333333333221110 25667999999987655555566666666667778
Q ss_pred EEEEcCCh-hhhhhh-cCCceEeCCCCC
Q 002308 289 ILITTRKE-SIVSMM-RSTDIISIEELA 314 (938)
Q Consensus 289 ilvTtr~~-~v~~~~-~~~~~~~l~~L~ 314 (938)
+|++|... .+...+ .....+.+.+.+
T Consensus 142 ~il~~n~~~~il~tI~SRc~~i~f~~~~ 169 (325)
T COG0470 142 FILITNDPSKILPTIRSRCQRIRFKPPS 169 (325)
T ss_pred EEEEcCChhhccchhhhcceeeecCCch
Confidence 88877743 333322 335567777633
No 235
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=96.85 E-value=0.0014 Score=69.13 Aligned_cols=51 Identities=14% Similarity=0.222 Sum_probs=42.9
Q ss_pred ceecchhhHHHHHHHHhccCcccCCCeEEEEEEccCCChHHHHHHHHhhhh
Q 002308 151 EICGRVGERNALLSMLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNHV 201 (938)
Q Consensus 151 ~~vGr~~~~~~l~~~l~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~v~~~~ 201 (938)
.++|.++.++++.+++...........++++|+|++|+||||||..+++..
T Consensus 52 ~~~G~~~~i~~lv~~l~~~a~g~~~~r~il~L~GPPGsGKStla~~La~~l 102 (361)
T smart00763 52 DFFGMEEAIERFVNYFKSAAQGLEERKQILYLLGPVGGGKSSLVECLKRGL 102 (361)
T ss_pred hccCcHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 699999999999999986553223456899999999999999999999853
No 236
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=96.84 E-value=0.024 Score=60.47 Aligned_cols=71 Identities=7% Similarity=0.137 Sum_probs=48.3
Q ss_pred CceEEEEEecCCCCCccChhHHHHhhhCCCCCcEEEEEcCChh-hhhhh-cCCceEeCCCCChHHHHHHHHHh
Q 002308 255 GKRFLLVLDDVWDGDYIKWEPFYRCLKKGLHGSKILITTRKES-IVSMM-RSTDIISIEELAEEECWVLFKRL 325 (938)
Q Consensus 255 ~~~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtr~~~-v~~~~-~~~~~~~l~~L~~~~~~~lf~~~ 325 (938)
+++-++|+|++...+...-..+...+.....+..+|++|.+.+ +...+ .....+.+.+++.+++.+.+...
T Consensus 112 ~~~kV~iiEp~~~Ld~~a~naLLk~LEep~~~~~~Ilvth~~~~ll~ti~SRc~~~~~~~~~~~~~~~~L~~~ 184 (325)
T PRK08699 112 GGLRVILIHPAESMNLQAANSLLKVLEEPPPQVVFLLVSHAADKVLPTIKSRCRKMVLPAPSHEEALAYLRER 184 (325)
T ss_pred CCceEEEEechhhCCHHHHHHHHHHHHhCcCCCEEEEEeCChHhChHHHHHHhhhhcCCCCCHHHHHHHHHhc
Confidence 3444556788887766666677777765445566777777654 33332 34678999999999998888653
No 237
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=96.84 E-value=0.001 Score=61.51 Aligned_cols=108 Identities=16% Similarity=0.112 Sum_probs=63.2
Q ss_pred ecchhhHHHHHHHHhccCcccCCCeEEEEEEccCCChHHHHHHHHhhhhhh-hcccCeEEEEEeCCCCCHHHHHHHHHHH
Q 002308 153 CGRVGERNALLSMLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNHVEV-KREFDKTLWVCVSETFDEFRIAKAMLEA 231 (938)
Q Consensus 153 vGr~~~~~~l~~~l~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~v~~~~~~-~~~f~~~~wv~~~~~~~~~~~~~~i~~~ 231 (938)
||+...++++.+.+..-. .....|.|+|..|+||+++|+.++..... ...|.. +.+... .
T Consensus 1 vG~S~~~~~l~~~l~~~a----~~~~pvli~GE~GtGK~~~A~~lh~~~~~~~~~~~~---~~~~~~-~----------- 61 (138)
T PF14532_consen 1 VGKSPAMRRLRRQLERLA----KSSSPVLITGEPGTGKSLLARALHRYSGRANGPFIV---IDCASL-P----------- 61 (138)
T ss_dssp --SCHHHHHHHHHHHHHH----CSSS-EEEECCTTSSHHHHHHCCHHTTTTCCS-CCC---CCHHCT-C-----------
T ss_pred CCCCHHHHHHHHHHHHHh----CCCCcEEEEcCCCCCHHHHHHHHHhhcCccCCCeEE---echhhC-c-----------
Confidence 566667777777666432 23456899999999999999988874221 111211 111110 0
Q ss_pred hcCCCCCCCcHHHHHHHHHHHhcCceEEEEEecCCCCCccChhHHHHhhhCC-CCCcEEEEEcCCh
Q 002308 232 LTGSTSNLNALQSLLISIDESIAGKRFLLVLDDVWDGDYIKWEPFYRCLKKG-LHGSKILITTRKE 296 (938)
Q Consensus 232 l~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~~~~~~~l~~~l~~~-~~gs~ilvTtr~~ 296 (938)
.+.+.+ .+.--++|+|+..-+......+...+... ....|+|.||+..
T Consensus 62 --------------~~~l~~---a~~gtL~l~~i~~L~~~~Q~~L~~~l~~~~~~~~RlI~ss~~~ 110 (138)
T PF14532_consen 62 --------------AELLEQ---AKGGTLYLKNIDRLSPEAQRRLLDLLKRQERSNVRLIASSSQD 110 (138)
T ss_dssp --------------HHHHHH---CTTSEEEEECGCCS-HHHHHHHHHHHHHCTTTTSEEEEEECC-
T ss_pred --------------HHHHHH---cCCCEEEECChHHCCHHHHHHHHHHHHhcCCCCeEEEEEeCCC
Confidence 111111 13345779999887766667777777653 5678999998853
No 238
>PHA00729 NTP-binding motif containing protein
Probab=96.80 E-value=0.01 Score=58.66 Aligned_cols=25 Identities=36% Similarity=0.413 Sum_probs=22.3
Q ss_pred CeEEEEEEccCCChHHHHHHHHhhh
Q 002308 176 GLHIISIVGMGGIGKTTLAQLACNH 200 (938)
Q Consensus 176 ~~~vv~i~G~~GiGKTtLa~~v~~~ 200 (938)
+...|.|.|.+|+||||||..+.+.
T Consensus 16 ~f~nIlItG~pGvGKT~LA~aLa~~ 40 (226)
T PHA00729 16 GFVSAVIFGKQGSGKTTYALKVARD 40 (226)
T ss_pred CeEEEEEECCCCCCHHHHHHHHHHH
Confidence 4567999999999999999999884
No 239
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=96.80 E-value=0.0052 Score=62.47 Aligned_cols=47 Identities=19% Similarity=0.224 Sum_probs=35.8
Q ss_pred CCeEEEEEEccCCChHHHHHHHHhhhhhhhcccCeEEEEEeCCCCCHHHH
Q 002308 175 KGLHIISIVGMGGIGKTTLAQLACNHVEVKREFDKTLWVCVSETFDEFRI 224 (938)
Q Consensus 175 ~~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~ 224 (938)
....++.|+|.+|+|||++|.+++.. ....-..++|++.. .++.+.+
T Consensus 21 ~~g~i~~i~G~~GsGKT~l~~~la~~--~~~~~~~v~yi~~e-~~~~~r~ 67 (225)
T PRK09361 21 ERGTITQIYGPPGSGKTNICLQLAVE--AAKNGKKVIYIDTE-GLSPERF 67 (225)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH--HHHCCCeEEEEECC-CCCHHHH
Confidence 35689999999999999999999874 32334678899887 5555443
No 240
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=96.79 E-value=0.016 Score=56.75 Aligned_cols=158 Identities=15% Similarity=0.146 Sum_probs=88.0
Q ss_pred CCceecchhhHH---HHHHHHhccCcccCCCeEEEEEEccCCChHHHHHHHHhhhhhhhcccCeEEEEEeCCCCCHHHHH
Q 002308 149 EEEICGRVGERN---ALLSMLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNHVEVKREFDKTLWVCVSETFDEFRIA 225 (938)
Q Consensus 149 ~~~~vGr~~~~~---~l~~~l~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~ 225 (938)
-+++||.++... -|.+.|..+..=+.-.++-|..+|++|.|||.+|+++++. .+..| +.+.. .
T Consensus 120 ~ddViGqEeAK~kcrli~~yLenPe~Fg~WAPknVLFyGppGTGKTm~Akalane--~kvp~-----l~vka-------t 185 (368)
T COG1223 120 LDDVIGQEEAKRKCRLIMEYLENPERFGDWAPKNVLFYGPPGTGKTMMAKALANE--AKVPL-----LLVKA-------T 185 (368)
T ss_pred HhhhhchHHHHHHHHHHHHHhhChHHhcccCcceeEEECCCCccHHHHHHHHhcc--cCCce-----EEech-------H
Confidence 356899876554 3666676554323456789999999999999999999994 32222 22221 1
Q ss_pred HHHHHHhcCCCCCCCcHHHHHHHHHH-HhcCceEEEEEecCCCCC--------ccC----hhHHHHhhhC--CCCCcEEE
Q 002308 226 KAMLEALTGSTSNLNALQSLLISIDE-SIAGKRFLLVLDDVWDGD--------YIK----WEPFYRCLKK--GLHGSKIL 290 (938)
Q Consensus 226 ~~i~~~l~~~~~~~~~~~~~~~~l~~-~l~~~~~LlVlDdv~~~~--------~~~----~~~l~~~l~~--~~~gs~il 290 (938)
+-|.+..+ +....++.+.+ .-+..++++.+|.++-.. ..+ .+.++.-+.. ...|...|
T Consensus 186 ~liGehVG-------dgar~Ihely~rA~~~aPcivFiDE~DAiaLdRryQelRGDVsEiVNALLTelDgi~eneGVvtI 258 (368)
T COG1223 186 ELIGEHVG-------DGARRIHELYERARKAAPCIVFIDELDAIALDRRYQELRGDVSEIVNALLTELDGIKENEGVVTI 258 (368)
T ss_pred HHHHHHhh-------hHHHHHHHHHHHHHhcCCeEEEehhhhhhhhhhhHHHhcccHHHHHHHHHHhccCcccCCceEEE
Confidence 11111111 11112222222 223468999999873210 011 1223333322 23566666
Q ss_pred EEcCChhhhhh-hcC--CceEeCCCCChHHHHHHHHHhhc
Q 002308 291 ITTRKESIVSM-MRS--TDIISIEELAEEECWVLFKRLAF 327 (938)
Q Consensus 291 vTtr~~~v~~~-~~~--~~~~~l~~L~~~~~~~lf~~~~~ 327 (938)
-+|.++++... +.. ..-++..--+++|..+++..++-
T Consensus 259 aaTN~p~~LD~aiRsRFEeEIEF~LP~~eEr~~ile~y~k 298 (368)
T COG1223 259 AATNRPELLDPAIRSRFEEEIEFKLPNDEERLEILEYYAK 298 (368)
T ss_pred eecCChhhcCHHHHhhhhheeeeeCCChHHHHHHHHHHHH
Confidence 66766655443 222 34566666678888888888774
No 241
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=96.78 E-value=0.012 Score=71.06 Aligned_cols=180 Identities=16% Similarity=0.083 Sum_probs=93.4
Q ss_pred CCceecchhhHHHHHHHHhccCc-------ccCCCeEEEEEEccCCChHHHHHHHHhhhhhhhcccCeEEEEEeCCCCCH
Q 002308 149 EEEICGRVGERNALLSMLLCESS-------EQQKGLHIISIVGMGGIGKTTLAQLACNHVEVKREFDKTLWVCVSETFDE 221 (938)
Q Consensus 149 ~~~~vGr~~~~~~l~~~l~~~~~-------~~~~~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~ 221 (938)
-+.+.|.+..++++.+.+...-. -+-...+-+.++|++|+|||++|+.+++. ....| +.++...
T Consensus 177 ~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~gi~~~~giLL~GppGtGKT~laraia~~--~~~~~---i~i~~~~---- 247 (733)
T TIGR01243 177 YEDIGGLKEAKEKIREMVELPMKHPELFEHLGIEPPKGVLLYGPPGTGKTLLAKAVANE--AGAYF---ISINGPE---- 247 (733)
T ss_pred HHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCceEEEECCCCCChHHHHHHHHHH--hCCeE---EEEecHH----
Confidence 34588999999998887643210 00123466899999999999999999883 32222 2222111
Q ss_pred HHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHhcCceEEEEEecCCCCCc-----------cChhHHHHhhhCC-CCCcEE
Q 002308 222 FRIAKAMLEALTGSTSNLNALQSLLISIDESIAGKRFLLVLDDVWDGDY-----------IKWEPFYRCLKKG-LHGSKI 289 (938)
Q Consensus 222 ~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~~-----------~~~~~l~~~l~~~-~~gs~i 289 (938)
+ ..... ......+...+.......+.+|++|+++.... .....+...+... ..+..+
T Consensus 248 --i----~~~~~-----g~~~~~l~~lf~~a~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~Ll~~ld~l~~~~~vi 316 (733)
T TIGR01243 248 --I----MSKYY-----GESEERLREIFKEAEENAPSIIFIDEIDAIAPKREEVTGEVEKRVVAQLLTLMDGLKGRGRVI 316 (733)
T ss_pred --H----hcccc-----cHHHHHHHHHHHHHHhcCCcEEEeehhhhhcccccCCcchHHHHHHHHHHHHhhccccCCCEE
Confidence 1 10000 01111222233333345678999999843210 0112233333322 233334
Q ss_pred EE-EcCChh-hhhhhc----CCceEeCCCCChHHHHHHHHHhhcCCCCCchhhHHHHHHHHHHHhcCCCh
Q 002308 290 LI-TTRKES-IVSMMR----STDIISIEELAEEECWVLFKRLAFFGRSTEECEKLEQIGQRIARKCKGLP 353 (938)
Q Consensus 290 lv-Ttr~~~-v~~~~~----~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~P 353 (938)
+| ||.... +..... -...+.+...+.++..+++..+...... .... ....+++.+.|.-
T Consensus 317 vI~atn~~~~ld~al~r~gRfd~~i~i~~P~~~~R~~Il~~~~~~~~l-~~d~----~l~~la~~t~G~~ 381 (733)
T TIGR01243 317 VIGATNRPDALDPALRRPGRFDREIVIRVPDKRARKEILKVHTRNMPL-AEDV----DLDKLAEVTHGFV 381 (733)
T ss_pred EEeecCChhhcCHHHhCchhccEEEEeCCcCHHHHHHHHHHHhcCCCC-cccc----CHHHHHHhCCCCC
Confidence 44 454432 211111 1346778888888888888865432111 1111 1456777777754
No 242
>PF10443 RNA12: RNA12 protein; InterPro: IPR018850 Mitochondrial escape protein 2 (also known as RNA12) plays a role in maintaining the mitochondrial genome and in controlling mtDNA escape [, ]. It is also involved in the regulation of mtDNA nucleotide structure and number []. Additionally, this protein have a dispensable role in the early maturation of pre-rRNA [].
Probab=96.74 E-value=0.053 Score=58.35 Aligned_cols=203 Identities=15% Similarity=0.114 Sum_probs=122.2
Q ss_pred chhhHHHHHHHHhccCcccCCCeEEEEEEccCCChHHHHH-HHHhhhhhhhcccCeEEEEEeCCC---CCHHHHHHHHHH
Q 002308 155 RVGERNALLSMLLCESSEQQKGLHIISIVGMGGIGKTTLA-QLACNHVEVKREFDKTLWVCVSET---FDEFRIAKAMLE 230 (938)
Q Consensus 155 r~~~~~~l~~~l~~~~~~~~~~~~vv~i~G~~GiGKTtLa-~~v~~~~~~~~~f~~~~wv~~~~~---~~~~~~~~~i~~ 230 (938)
|.+..++|..||.... -..|.|.||-|+||+.|+ .++..+ ...+..++|.+- .+-..+...++.
T Consensus 1 R~e~~~~L~~wL~e~~------~TFIvV~GPrGSGK~elV~d~~L~~------r~~vL~IDC~~i~~ar~D~~~I~~lA~ 68 (431)
T PF10443_consen 1 RKEAIEQLKSWLNENP------NTFIVVQGPRGSGKRELVMDHVLKD------RKNVLVIDCDQIVKARGDAAFIKNLAS 68 (431)
T ss_pred CchHHHHHHHHHhcCC------CeEEEEECCCCCCccHHHHHHHHhC------CCCEEEEEChHhhhccChHHHHHHHHH
Confidence 5677899999998543 358999999999999999 766664 233677776432 233445555555
Q ss_pred Hhc-----------------------CCCCCC-CcH-HHHHHH-------HHH-------------------Hh---cCc
Q 002308 231 ALT-----------------------GSTSNL-NAL-QSLLIS-------IDE-------------------SI---AGK 256 (938)
Q Consensus 231 ~l~-----------------------~~~~~~-~~~-~~~~~~-------l~~-------------------~l---~~~ 256 (938)
+++ +...+. ... .++.+. +++ ++ ..+
T Consensus 69 qvGY~PvFsw~nSiss~IDLa~qGltGqKaGfSes~e~Ql~~IL~~t~~ALr~ial~~~~~~~~~~~l~e~~yl~~hPe~ 148 (431)
T PF10443_consen 69 QVGYFPVFSWMNSISSFIDLAVQGLTGQKAGFSESLETQLKKILQTTATALRDIALSNRKKDDKDANLKEEDYLEAHPER 148 (431)
T ss_pred hcCCCcchHHHHHHHHHHHHHHhhccccccCCCCChHHHHHHHHHHHHHHHHHHHHHhhhccccccccCchhhhhhCCcc
Confidence 553 111111 111 111111 111 11 123
Q ss_pred eEEEEEecCCCCCcc---ChhHHHH---hhhCCCCCcEEEEEcCChhhhhh----h--cCCceEeCCCCChHHHHHHHHH
Q 002308 257 RFLLVLDDVWDGDYI---KWEPFYR---CLKKGLHGSKILITTRKESIVSM----M--RSTDIISIEELAEEECWVLFKR 324 (938)
Q Consensus 257 ~~LlVlDdv~~~~~~---~~~~l~~---~l~~~~~gs~ilvTtr~~~v~~~----~--~~~~~~~l~~L~~~~~~~lf~~ 324 (938)
+-+||+||+-..... -|+.+.. .+-. .+=.+||+.|-+...... + .....+.+...+++.|.++...
T Consensus 149 ~PVVVIdnF~~k~~~~~~iy~~laeWAa~Lv~-~nIAHVIFlT~dv~~~k~LskaLPn~vf~tI~L~Das~~~Ak~yV~~ 227 (431)
T PF10443_consen 149 RPVVVIDNFLHKAEENDFIYDKLAEWAASLVQ-NNIAHVIFLTDDVSYSKPLSKALPNRVFKTISLSDASPESAKQYVLS 227 (431)
T ss_pred CCEEEEcchhccCcccchHHHHHHHHHHHHHh-cCccEEEEECCCCchhhhHHHhCCCCceeEEeecCCCHHHHHHHHHH
Confidence 679999998543211 1222211 1111 233468888877654443 2 2245788999999999999999
Q ss_pred hhcCCCCC------------ch----hhHHHHHHHHHHHhcCCChhHHHHHHhhhcCCCCHH
Q 002308 325 LAFFGRST------------EE----CEKLEQIGQRIARKCKGLPLAAKTMGSLMSSKKTEE 370 (938)
Q Consensus 325 ~~~~~~~~------------~~----~~~~~~~~~~i~~~~~g~Plai~~~~~~l~~~~~~~ 370 (938)
+....... .. ......-....++.+||--.-+..+++.++...++.
T Consensus 228 ~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eld~~i~~LGGRltDLe~lvrRiksGe~p~ 289 (431)
T PF10443_consen 228 QLDEDTEDSSDSKESNEQNKNDKSAENEKDLAELDECIEPLGGRLTDLEFLVRRIKSGESPE 289 (431)
T ss_pred HhcccccccccccccccccccccccccccchHHHHHHHHHcCCcHHHHHHHHHHHHcCCCHH
Confidence 87543110 00 012334456788999999999999999998876654
No 243
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=96.73 E-value=0.0051 Score=69.04 Aligned_cols=88 Identities=17% Similarity=0.267 Sum_probs=62.0
Q ss_pred CCCeEEEEEEccCCChHHHHHHHHhhhhhhhcccCeEEEEEeCCCCCHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHh
Q 002308 174 QKGLHIISIVGMGGIGKTTLAQLACNHVEVKREFDKTLWVCVSETFDEFRIAKAMLEALTGSTSNLNALQSLLISIDESI 253 (938)
Q Consensus 174 ~~~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l 253 (938)
.+..++..++|++|.||||||.-+++.. .| .++=+++|..-+...+-..|...+.... .+
T Consensus 323 RP~kKilLL~GppGlGKTTLAHViAkqa----GY-sVvEINASDeRt~~~v~~kI~~avq~~s---------------~l 382 (877)
T KOG1969|consen 323 RPPKKILLLCGPPGLGKTTLAHVIAKQA----GY-SVVEINASDERTAPMVKEKIENAVQNHS---------------VL 382 (877)
T ss_pred CCccceEEeecCCCCChhHHHHHHHHhc----Cc-eEEEecccccccHHHHHHHHHHHHhhcc---------------cc
Confidence 4567899999999999999999998742 23 3677888887777766666665554221 12
Q ss_pred --cCceEEEEEecCCCCCccChhHHHHhhh
Q 002308 254 --AGKRFLLVLDDVWDGDYIKWEPFYRCLK 281 (938)
Q Consensus 254 --~~~~~LlVlDdv~~~~~~~~~~l~~~l~ 281 (938)
.+++.-+|+|.++.......+.+.+.+.
T Consensus 383 ~adsrP~CLViDEIDGa~~~~Vdvilslv~ 412 (877)
T KOG1969|consen 383 DADSRPVCLVIDEIDGAPRAAVDVILSLVK 412 (877)
T ss_pred ccCCCcceEEEecccCCcHHHHHHHHHHHH
Confidence 2678899999997765444455555544
No 244
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=96.73 E-value=0.0072 Score=71.60 Aligned_cols=122 Identities=15% Similarity=0.207 Sum_probs=70.4
Q ss_pred ceecchhhHHHHHHHHhccCc---ccCCCeEEEEEEccCCChHHHHHHHHhhhhhhhcccCeEEEEEeCCCCCHHHHHHH
Q 002308 151 EICGRVGERNALLSMLLCESS---EQQKGLHIISIVGMGGIGKTTLAQLACNHVEVKREFDKTLWVCVSETFDEFRIAKA 227 (938)
Q Consensus 151 ~~vGr~~~~~~l~~~l~~~~~---~~~~~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~ 227 (938)
.++|.+..++.+...+..... ........+.++|++|+|||++|+.++.. .. ...+.++++...... .
T Consensus 459 ~ViGQ~~ai~~l~~~i~~~~~gl~~~~kp~~~~Lf~GP~GvGKT~lAk~LA~~--l~---~~~i~id~se~~~~~----~ 529 (758)
T PRK11034 459 LVFGQDKAIEALTEAIKMSRAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKA--LG---IELLRFDMSEYMERH----T 529 (758)
T ss_pred eEeCcHHHHHHHHHHHHHHhccccCCCCCcceEEEECCCCCCHHHHHHHHHHH--hC---CCcEEeechhhcccc----c
Confidence 479999999999888874211 01234567899999999999999999874 22 223444544322211 1
Q ss_pred HHHHhcCCCCCCCcHHHHHHHHHHHhc-CceEEEEEecCCCCCccChhHHHHhhhCC
Q 002308 228 MLEALTGSTSNLNALQSLLISIDESIA-GKRFLLVLDDVWDGDYIKWEPFYRCLKKG 283 (938)
Q Consensus 228 i~~~l~~~~~~~~~~~~~~~~l~~~l~-~~~~LlVlDdv~~~~~~~~~~l~~~l~~~ 283 (938)
+ ..+.+.+..-...+ ....+.+.++ ...-+|+||+++......+..+...+..+
T Consensus 530 ~-~~LiG~~~gyvg~~-~~g~L~~~v~~~p~sVlllDEieka~~~v~~~LLq~ld~G 584 (758)
T PRK11034 530 V-SRLIGAPPGYVGFD-QGGLLTDAVIKHPHAVLLLDEIEKAHPDVFNLLLQVMDNG 584 (758)
T ss_pred H-HHHcCCCCCccccc-ccchHHHHHHhCCCcEEEeccHhhhhHHHHHHHHHHHhcC
Confidence 1 22222211110000 0112222333 34469999999887766677777776543
No 245
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=96.68 E-value=0.0013 Score=61.88 Aligned_cols=83 Identities=19% Similarity=0.124 Sum_probs=49.1
Q ss_pred CCCCeeeecCCccccccccccCCCCccEEEcCCCCCcccccccccccCccceeecCCCcccccC-CccCCCCCCCcccCe
Q 002308 592 VHLRYLNLSDQKIKKLPETLCELYNLEKLDISGCSDLRELPKGIGKLINMKHLLNSGTRSLRYM-PVGIGRLTGLRTLGE 670 (938)
Q Consensus 592 ~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~l~~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~-p~~l~~l~~L~~L~l 670 (938)
-+...++|++|.+..++. +..++.|.+|.+++|.+...-|.--..+++|..|.|.+|++...- -..+..++.|+.|.+
T Consensus 42 d~~d~iDLtdNdl~~l~~-lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltl 120 (233)
T KOG1644|consen 42 DQFDAIDLTDNDLRKLDN-LPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTL 120 (233)
T ss_pred cccceecccccchhhccc-CCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceeee
Confidence 356778888888776543 667888888888888844444443334567888888877432210 011334445555554
Q ss_pred eEecC
Q 002308 671 FHVSA 675 (938)
Q Consensus 671 ~~~~~ 675 (938)
.+|..
T Consensus 121 l~Npv 125 (233)
T KOG1644|consen 121 LGNPV 125 (233)
T ss_pred cCCch
Confidence 44443
No 246
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=96.68 E-value=0.015 Score=64.11 Aligned_cols=161 Identities=14% Similarity=0.171 Sum_probs=88.4
Q ss_pred CceecchhhHHHHHHHHhccCcc------cCCCeEEEEEEccCCChHHHHHHHHhhhhhhhcccCeEEEEEeCCCCCHHH
Q 002308 150 EEICGRVGERNALLSMLLCESSE------QQKGLHIISIVGMGGIGKTTLAQLACNHVEVKREFDKTLWVCVSETFDEFR 223 (938)
Q Consensus 150 ~~~vGr~~~~~~l~~~l~~~~~~------~~~~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~ 223 (938)
..+=|.+..+.++.+++..-..+ +-..++=|.+||++|.|||.||++++.. ..- -|+.++.+
T Consensus 190 ~diGG~d~~~~el~~li~~i~~Pe~~~~lGv~PprGvLlHGPPGCGKT~lA~AiAge--l~v-----Pf~~isAp----- 257 (802)
T KOG0733|consen 190 SDIGGLDKTLAELCELIIHIKHPEVFSSLGVRPPRGVLLHGPPGCGKTSLANAIAGE--LGV-----PFLSISAP----- 257 (802)
T ss_pred hhccChHHHHHHHHHHHHHhcCchhHhhcCCCCCCceeeeCCCCccHHHHHHHHhhh--cCC-----ceEeecch-----
Confidence 45678888888888877653221 1345677899999999999999999984 332 23343331
Q ss_pred HHHHHHHHhcCCCCCCCcHHHHHHHHHHHhcCceEEEEEecCCCCC-----------ccChhHHHHhhhCC----CCCcE
Q 002308 224 IAKAMLEALTGSTSNLNALQSLLISIDESIAGKRFLLVLDDVWDGD-----------YIKWEPFYRCLKKG----LHGSK 288 (938)
Q Consensus 224 ~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~-----------~~~~~~l~~~l~~~----~~gs~ 288 (938)
+|+....+ ...+.+.....+.....++++++|+++-.. ..-..+++..+..- ..|-.
T Consensus 258 ---eivSGvSG-----ESEkkiRelF~~A~~~aPcivFiDeIDAI~pkRe~aqreMErRiVaQLlt~mD~l~~~~~~g~~ 329 (802)
T KOG0733|consen 258 ---EIVSGVSG-----ESEKKIRELFDQAKSNAPCIVFIDEIDAITPKREEAQREMERRIVAQLLTSMDELSNEKTKGDP 329 (802)
T ss_pred ---hhhcccCc-----ccHHHHHHHHHHHhccCCeEEEeecccccccchhhHHHHHHHHHHHHHHHhhhcccccccCCCC
Confidence 12222221 112223333444556689999999984311 11122333333221 11333
Q ss_pred EEE---EcCChhhhhhh---cC-CceEeCCCCChHHHHHHHHHhhcCCC
Q 002308 289 ILI---TTRKESIVSMM---RS-TDIISIEELAEEECWVLFKRLAFFGR 330 (938)
Q Consensus 289 ilv---Ttr~~~v~~~~---~~-~~~~~l~~L~~~~~~~lf~~~~~~~~ 330 (938)
||| |+|...+.... +. ..-|.++-=++.+-.++++..+.+-.
T Consensus 330 VlVIgATnRPDslDpaLRRaGRFdrEI~l~vP~e~aR~~IL~~~~~~lr 378 (802)
T KOG0733|consen 330 VLVIGATNRPDSLDPALRRAGRFDREICLGVPSETAREEILRIICRGLR 378 (802)
T ss_pred eEEEecCCCCcccCHHHhccccccceeeecCCchHHHHHHHHHHHhhCC
Confidence 332 45544333332 21 45677777777777777777664333
No 247
>PRK05541 adenylylsulfate kinase; Provisional
Probab=96.66 E-value=0.0089 Score=58.03 Aligned_cols=37 Identities=27% Similarity=0.470 Sum_probs=29.2
Q ss_pred CeEEEEEEccCCChHHHHHHHHhhhhhhhcccCeEEEEE
Q 002308 176 GLHIISIVGMGGIGKTTLAQLACNHVEVKREFDKTLWVC 214 (938)
Q Consensus 176 ~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~ 214 (938)
...+|.+.|+.|+||||+|+.++. +....+..++++.
T Consensus 6 ~~~~I~i~G~~GsGKst~a~~l~~--~l~~~~~~~~~~~ 42 (176)
T PRK05541 6 NGYVIWITGLAGSGKTTIAKALYE--RLKLKYSNVIYLD 42 (176)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHH--HHHHcCCcEEEEe
Confidence 456999999999999999999998 4555555555653
No 248
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=96.64 E-value=0.014 Score=54.71 Aligned_cols=125 Identities=21% Similarity=0.282 Sum_probs=73.8
Q ss_pred CeEEEEEEccCCChHHHHHHHHhhhhhhhcccCeEEEEEe---------------------CCC----------------
Q 002308 176 GLHIISIVGMGGIGKTTLAQLACNHVEVKREFDKTLWVCV---------------------SET---------------- 218 (938)
Q Consensus 176 ~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~---------------------~~~---------------- 218 (938)
....+.|+|+.|.||||+.+.+|...+.. ...+|+.- -++
T Consensus 27 ~Gef~fl~GpSGAGKSTllkLi~~~e~pt---~G~i~~~~~dl~~l~~~~iP~LRR~IGvVFQD~rLL~~~tvyeNVA~p 103 (223)
T COG2884 27 KGEFVFLTGPSGAGKSTLLKLIYGEERPT---RGKILVNGHDLSRLKGREIPFLRRQIGVVFQDFRLLPDRTVYENVALP 103 (223)
T ss_pred CceEEEEECCCCCCHHHHHHHHHhhhcCC---CceEEECCeecccccccccchhhheeeeEeeeccccccchHhhhhhhh
Confidence 45689999999999999999999864321 12233310 011
Q ss_pred -----CCHHHHHHHH---HHHhcCC------CCCCCcHHHHHHHHHHHhcCceEEEEEecCC-CCCc-cChhHHHHhhhC
Q 002308 219 -----FDEFRIAKAM---LEALTGS------TSNLNALQSLLISIDESIAGKRFLLVLDDVW-DGDY-IKWEPFYRCLKK 282 (938)
Q Consensus 219 -----~~~~~~~~~i---~~~l~~~------~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~-~~~~-~~~~~l~~~l~~ 282 (938)
....++-+.. ++..+.. +...+..++-...|.+.+-+++-+++=|.=. +.|. ..|+- ...|..
T Consensus 104 L~v~G~~~~~i~~rV~~~L~~VgL~~k~~~lP~~LSGGEQQRvaIARAiV~~P~vLlADEPTGNLDp~~s~~i-m~lfee 182 (223)
T COG2884 104 LRVIGKPPREIRRRVSEVLDLVGLKHKARALPSQLSGGEQQRVAIARAIVNQPAVLLADEPTGNLDPDLSWEI-MRLFEE 182 (223)
T ss_pred hhccCCCHHHHHHHHHHHHHHhccchhhhcCccccCchHHHHHHHHHHHccCCCeEeecCCCCCCChHHHHHH-HHHHHH
Confidence 1122222222 2222221 2233455555666777888889999988642 1121 23443 334433
Q ss_pred -CCCCcEEEEEcCChhhhhhhcC
Q 002308 283 -GLHGSKILITTRKESIVSMMRS 304 (938)
Q Consensus 283 -~~~gs~ilvTtr~~~v~~~~~~ 304 (938)
+..|..||++|-+.++...+..
T Consensus 183 inr~GtTVl~ATHd~~lv~~~~~ 205 (223)
T COG2884 183 INRLGTTVLMATHDLELVNRMRH 205 (223)
T ss_pred HhhcCcEEEEEeccHHHHHhccC
Confidence 5689999999999988777643
No 249
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.63 E-value=0.023 Score=63.80 Aligned_cols=163 Identities=18% Similarity=0.040 Sum_probs=88.3
Q ss_pred CeEEEEEEccCCChHHHHHHHHhhhhhhhcccCeEEEEEeCCCCC--HHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHh
Q 002308 176 GLHIISIVGMGGIGKTTLAQLACNHVEVKREFDKTLWVCVSETFD--EFRIAKAMLEALTGSTSNLNALQSLLISIDESI 253 (938)
Q Consensus 176 ~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~--~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l 253 (938)
...-|.|.|+.|+|||+||+++++... +.+.-.+.+|+++.-.. .+.+++. +...+.+.+
T Consensus 430 ~~~~Ill~G~~GsGKT~L~kal~~~~~-k~~~~hv~~v~Cs~l~~~~~e~iQk~-----------------l~~vfse~~ 491 (952)
T KOG0735|consen 430 RHGNILLNGPKGSGKTNLVKALFDYYS-KDLIAHVEIVSCSTLDGSSLEKIQKF-----------------LNNVFSEAL 491 (952)
T ss_pred ccccEEEeCCCCCCHhHHHHHHHHHhc-cccceEEEEEechhccchhHHHHHHH-----------------HHHHHHHHH
Confidence 446789999999999999999999644 55556677777765221 1122111 112334456
Q ss_pred cCceEEEEEecCCC------CCccChhH----HHHhh----h-CCCCCcE--EEEEcCChhhhhh-hcC----CceEeCC
Q 002308 254 AGKRFLLVLDDVWD------GDYIKWEP----FYRCL----K-KGLHGSK--ILITTRKESIVSM-MRS----TDIISIE 311 (938)
Q Consensus 254 ~~~~~LlVlDdv~~------~~~~~~~~----l~~~l----~-~~~~gs~--ilvTtr~~~v~~~-~~~----~~~~~l~ 311 (938)
...+-+|||||++- .+-.+|.. +..++ . ....+.+ +|.|.....-... ... .....+.
T Consensus 492 ~~~PSiIvLDdld~l~~~s~~e~~q~~~~~~rla~flnqvi~~y~~~~~~ia~Iat~qe~qtl~~~L~s~~~Fq~~~~L~ 571 (952)
T KOG0735|consen 492 WYAPSIIVLDDLDCLASASSNENGQDGVVSERLAAFLNQVIKIYLKRNRKIAVIATGQELQTLNPLLVSPLLFQIVIALP 571 (952)
T ss_pred hhCCcEEEEcchhhhhccCcccCCcchHHHHHHHHHHHHHHHHHHccCcEEEEEEechhhhhcChhhcCccceEEEEecC
Confidence 67889999999842 11112222 22222 1 1234444 3444443322111 111 2366788
Q ss_pred CCChHHHHHHHHHhhcCCCCCchhhHHHHHHHHHHHhcCC-ChhHHHHHH
Q 002308 312 ELAEEECWVLFKRLAFFGRSTEECEKLEQIGQRIARKCKG-LPLAAKTMG 360 (938)
Q Consensus 312 ~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g-~Plai~~~~ 360 (938)
.+...+..++++......... ...+...-+..+|+| .|.-++++.
T Consensus 572 ap~~~~R~~IL~~~~s~~~~~----~~~~dLd~ls~~TEGy~~~DL~ifV 617 (952)
T KOG0735|consen 572 APAVTRRKEILTTIFSKNLSD----ITMDDLDFLSVKTEGYLATDLVIFV 617 (952)
T ss_pred CcchhHHHHHHHHHHHhhhhh----hhhHHHHHHHHhcCCccchhHHHHH
Confidence 888888877777654222111 111223347777776 455554443
No 250
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=96.60 E-value=0.054 Score=57.09 Aligned_cols=26 Identities=31% Similarity=0.327 Sum_probs=23.9
Q ss_pred CCeEEEEEEccCCChHHHHHHHHhhh
Q 002308 175 KGLHIISIVGMGGIGKTTLAQLACNH 200 (938)
Q Consensus 175 ~~~~vv~i~G~~GiGKTtLa~~v~~~ 200 (938)
..++.++|||++|.|||.+|+.++..
T Consensus 146 k~PlgllL~GPPGcGKTllAraiA~e 171 (413)
T PLN00020 146 KVPLILGIWGGKGQGKSFQCELVFKK 171 (413)
T ss_pred CCCeEEEeeCCCCCCHHHHHHHHHHH
Confidence 56789999999999999999999994
No 251
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=96.60 E-value=0.0083 Score=60.64 Aligned_cols=44 Identities=16% Similarity=0.140 Sum_probs=32.9
Q ss_pred CCeEEEEEEccCCChHHHHHHHHhhhhhhhcccCeEEEEEeCCCCC
Q 002308 175 KGLHIISIVGMGGIGKTTLAQLACNHVEVKREFDKTLWVCVSETFD 220 (938)
Q Consensus 175 ~~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~ 220 (938)
....++.|+|.+|+||||+|.+++.. ....-..++|++....+.
T Consensus 17 ~~g~i~~i~G~~GsGKT~l~~~~a~~--~~~~g~~v~yi~~e~~~~ 60 (218)
T cd01394 17 ERGTVTQVYGPPGTGKTNIAIQLAVE--TAGQGKKVAYIDTEGLSS 60 (218)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHH--HHhcCCeEEEEECCCCCH
Confidence 35689999999999999999999874 222234677887655543
No 252
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=96.59 E-value=0.0096 Score=56.71 Aligned_cols=150 Identities=12% Similarity=0.185 Sum_probs=76.2
Q ss_pred EEEEEccCCChHHHHHHHHhhhhhhhcccCeEEEEEeCCCCCHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHhcC--c
Q 002308 179 IISIVGMGGIGKTTLAQLACNHVEVKREFDKTLWVCVSETFDEFRIAKAMLEALTGSTSNLNALQSLLISIDESIAG--K 256 (938)
Q Consensus 179 vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~--~ 256 (938)
++.|.|.+|+|||++|.++... ....++|+.-.+.++.+ +.+.|.+--...+..-.. .+....+.+.+.. +
T Consensus 1 ~~li~G~~~sGKS~~a~~~~~~-----~~~~~~y~at~~~~d~e-m~~rI~~H~~~R~~~w~t-~E~~~~l~~~l~~~~~ 73 (169)
T cd00544 1 IILVTGGARSGKSRFAERLAAE-----LGGPVTYIATAEAFDDE-MAERIARHRKRRPAHWRT-IETPRDLVSALKELDP 73 (169)
T ss_pred CEEEECCCCCCHHHHHHHHHHh-----cCCCeEEEEccCcCCHH-HHHHHHHHHHhCCCCceE-eecHHHHHHHHHhcCC
Confidence 3689999999999999998763 22467777766666543 444443322222211111 1222233333321 2
Q ss_pred eEEEEEecCCC-------CCc--------cChhHHHHhhhCCCCCcEEEEEcCChhhhhhhcCCceEeCCCCChHHHHHH
Q 002308 257 RFLLVLDDVWD-------GDY--------IKWEPFYRCLKKGLHGSKILITTRKESIVSMMRSTDIISIEELAEEECWVL 321 (938)
Q Consensus 257 ~~LlVlDdv~~-------~~~--------~~~~~l~~~l~~~~~gs~ilvTtr~~~v~~~~~~~~~~~l~~L~~~~~~~l 321 (938)
.-.+++|.+.. .+. ..+..+...+. ..+..+|++|.. +-.+..+.+...+.
T Consensus 74 ~~~VLIDclt~~~~n~l~~~~~~~~~~~~~~i~~l~~~l~--~~~~~~viVsnE------------vG~g~vp~~~~~r~ 139 (169)
T cd00544 74 GDVVLIDCLTLWVTNLLFADLEEWEAAIADEIDALLAAVR--NKPGTLILVSNE------------VGLGVVPENALGRR 139 (169)
T ss_pred CCEEEEEcHhHHHHHhCCCccccchhHHHHHHHHHHHHHH--cCCCcEEEEECC------------cCCCCCCCCHHHHH
Confidence 33799998611 100 01111233333 245556777642 22344556666677
Q ss_pred HHHhhcCCCCCchhhHHHHHHHHHHHhcCCChh
Q 002308 322 FKRLAFFGRSTEECEKLEQIGQRIARKCKGLPL 354 (938)
Q Consensus 322 f~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl 354 (938)
|...++ .....+...+.++..-..|+|+
T Consensus 140 f~d~lG-----~lnq~la~~ad~v~~vv~Gip~ 167 (169)
T cd00544 140 FRDELG-----RLNQRLAALADEVYLVVSGIPL 167 (169)
T ss_pred HHHHHH-----HHHHHHHHHCCEEEEEECCcce
Confidence 776653 2233444444444444566665
No 253
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=96.59 E-value=0.014 Score=55.85 Aligned_cols=39 Identities=31% Similarity=0.403 Sum_probs=29.4
Q ss_pred EEEEEccCCChHHHHHHHHhhhhhhhcccCeEEEEEeCCCC
Q 002308 179 IISIVGMGGIGKTTLAQLACNHVEVKREFDKTLWVCVSETF 219 (938)
Q Consensus 179 vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~ 219 (938)
++.|+|++|+||||++..++... ...-..++|+......
T Consensus 1 ~~~i~G~~G~GKT~l~~~i~~~~--~~~~~~v~~~~~e~~~ 39 (165)
T cd01120 1 LILVFGPTGSGKTTLALQLALNI--ATKGGKVVYVDIEEEI 39 (165)
T ss_pred CeeEeCCCCCCHHHHHHHHHHHH--HhcCCEEEEEECCcch
Confidence 36899999999999999998843 2233567788776544
No 254
>CHL00195 ycf46 Ycf46; Provisional
Probab=96.55 E-value=0.021 Score=64.09 Aligned_cols=159 Identities=16% Similarity=0.097 Sum_probs=81.2
Q ss_pred CceecchhhHHHHHHHHh---ccCc-ccCCCeEEEEEEccCCChHHHHHHHHhhhhhhhcccCeEEEEEeCCCCCHHHHH
Q 002308 150 EEICGRVGERNALLSMLL---CESS-EQQKGLHIISIVGMGGIGKTTLAQLACNHVEVKREFDKTLWVCVSETFDEFRIA 225 (938)
Q Consensus 150 ~~~vGr~~~~~~l~~~l~---~~~~-~~~~~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~ 225 (938)
+.+.|.+...+.+.+... .... -+-...+-|.++|++|+|||.+|+.+++. ....| +-+.++.
T Consensus 228 ~dvgGl~~lK~~l~~~~~~~~~~~~~~gl~~pkGILL~GPpGTGKTllAkaiA~e--~~~~~---~~l~~~~-------- 294 (489)
T CHL00195 228 SDIGGLDNLKDWLKKRSTSFSKQASNYGLPTPRGLLLVGIQGTGKSLTAKAIAND--WQLPL---LRLDVGK-------- 294 (489)
T ss_pred HHhcCHHHHHHHHHHHHHHhhHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHH--hCCCE---EEEEhHH--------
Confidence 356776655555543211 1000 00234567899999999999999999884 32222 1222211
Q ss_pred HHHHHHhcCCCCCCCcHHHHHHHHHHHhcCceEEEEEecCCCCC-------cc-Ch----hHHHHhhhCCCCCcEEEEEc
Q 002308 226 KAMLEALTGSTSNLNALQSLLISIDESIAGKRFLLVLDDVWDGD-------YI-KW----EPFYRCLKKGLHGSKILITT 293 (938)
Q Consensus 226 ~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~-------~~-~~----~~l~~~l~~~~~gs~ilvTt 293 (938)
+..... + .....+.+.+...-...+.+|++|+++..- .. .- ..+...+.....+.-||.||
T Consensus 295 --l~~~~v----G-ese~~l~~~f~~A~~~~P~IL~IDEID~~~~~~~~~~d~~~~~rvl~~lL~~l~~~~~~V~vIaTT 367 (489)
T CHL00195 295 --LFGGIV----G-ESESRMRQMIRIAEALSPCILWIDEIDKAFSNSESKGDSGTTNRVLATFITWLSEKKSPVFVVATA 367 (489)
T ss_pred --hccccc----C-hHHHHHHHHHHHHHhcCCcEEEehhhhhhhccccCCCCchHHHHHHHHHHHHHhcCCCceEEEEec
Confidence 110000 0 011112222222223578999999985311 00 01 11222233333444566677
Q ss_pred CChhh-hhhh----cCCceEeCCCCChHHHHHHHHHhhcC
Q 002308 294 RKESI-VSMM----RSTDIISIEELAEEECWVLFKRLAFF 328 (938)
Q Consensus 294 r~~~v-~~~~----~~~~~~~l~~L~~~~~~~lf~~~~~~ 328 (938)
.+... ...+ .-...+.++.-+.++..++|..+...
T Consensus 368 N~~~~Ld~allR~GRFD~~i~v~lP~~~eR~~Il~~~l~~ 407 (489)
T CHL00195 368 NNIDLLPLEILRKGRFDEIFFLDLPSLEEREKIFKIHLQK 407 (489)
T ss_pred CChhhCCHHHhCCCcCCeEEEeCCcCHHHHHHHHHHHHhh
Confidence 65532 2111 22457888888899999999987654
No 255
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.53 E-value=0.034 Score=59.33 Aligned_cols=113 Identities=9% Similarity=0.054 Sum_probs=58.3
Q ss_pred CeEEEEEEccCCChHHHHHHHHhhhhhhhcccCeEEEEEeCCCCC--HHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHh
Q 002308 176 GLHIISIVGMGGIGKTTLAQLACNHVEVKREFDKTLWVCVSETFD--EFRIAKAMLEALTGSTSNLNALQSLLISIDESI 253 (938)
Q Consensus 176 ~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~--~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l 253 (938)
..++|+++|++|+||||++..++.... ...+ .+..+... .+. ..+-++..++.++.+.....+..++...+...-
T Consensus 240 ~~~vI~LVGptGvGKTTTiaKLA~~L~-~~Gk-kVglI~aD-t~RiaAvEQLk~yae~lgipv~v~~d~~~L~~aL~~lk 316 (436)
T PRK11889 240 EVQTIALIGPTGVGKTTTLAKMAWQFH-GKKK-TVGFITTD-HSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFK 316 (436)
T ss_pred CCcEEEEECCCCCcHHHHHHHHHHHHH-HcCC-cEEEEecC-CcchHHHHHHHHHhhhcCCcEEecCCHHHHHHHHHHHH
Confidence 458999999999999999999987432 2222 34445443 232 222233333344433222234445555454432
Q ss_pred cC-ceEEEEEecCCCCC--ccChhHHHHhhhCCCCCcEEEE
Q 002308 254 AG-KRFLLVLDDVWDGD--YIKWEPFYRCLKKGLHGSKILI 291 (938)
Q Consensus 254 ~~-~~~LlVlDdv~~~~--~~~~~~l~~~l~~~~~gs~ilv 291 (938)
.. +.=+|++|-.-... ......+...+....+...++|
T Consensus 317 ~~~~~DvVLIDTaGRs~kd~~lm~EL~~~lk~~~PdevlLV 357 (436)
T PRK11889 317 EEARVDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLT 357 (436)
T ss_pred hccCCCEEEEeCccccCcCHHHHHHHHHHHhhcCCCeEEEE
Confidence 21 23477888775432 2224445555544333333333
No 256
>PF08423 Rad51: Rad51; InterPro: IPR013632 This domain is found at the C terminus of the DNA repair and recombination protein Rad51. It is critical for DNA binding []. Rad51 is a homologue of the bacterial RecA protein. Rad51 and RecA share a core ATPase domain.; PDB: 2ZUC_A 2Z43_C 2ZUD_B 2DFL_A 2ZUB_A 2BKE_A 2KZ3_A 2CVH_B 2CVF_B 1SZP_D ....
Probab=96.52 E-value=0.0098 Score=61.19 Aligned_cols=57 Identities=26% Similarity=0.306 Sum_probs=41.3
Q ss_pred CeEEEEEEccCCChHHHHHHHHhhhhhhhc----ccCeEEEEEeCCCCCHHHHHHHHHHHhc
Q 002308 176 GLHIISIVGMGGIGKTTLAQLACNHVEVKR----EFDKTLWVCVSETFDEFRIAKAMLEALT 233 (938)
Q Consensus 176 ~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~----~f~~~~wv~~~~~~~~~~~~~~i~~~l~ 233 (938)
...+.=|+|++|+|||+|+..++-...... .=..++|++....++.+.+. +|++...
T Consensus 37 ~g~itEi~G~~gsGKTql~l~l~~~~~l~~~~~g~~~~vvyidTe~~f~~~Rl~-~i~~~~~ 97 (256)
T PF08423_consen 37 TGSITEIVGESGSGKTQLCLQLAVNVQLPEEIGGLGGKVVYIDTEGTFSPERLQ-QIAERFG 97 (256)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHTTSGGCTTSSSSEEEEEESSSSS-HHHHH-HHHHHTT
T ss_pred CCcEEEEEEecccccchHHHHHHHHhhcccccccCCCceEEEeCCCCCCHHHHH-HHhhccc
Confidence 446899999999999999988876432221 12469999999999887764 5666543
No 257
>cd01133 F1-ATPase_beta F1 ATP synthase beta subunit, nucleotide-binding domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The beta subunit of ATP synthase is catalytic.
Probab=96.52 E-value=0.0085 Score=61.16 Aligned_cols=89 Identities=20% Similarity=0.255 Sum_probs=54.0
Q ss_pred CeEEEEEEccCCChHHHHHHHHhhhhhhhccc-CeEEEEEeCCCC-CHHHHHHHHHHHhcC-------CCCCCCcHHH--
Q 002308 176 GLHIISIVGMGGIGKTTLAQLACNHVEVKREF-DKTLWVCVSETF-DEFRIAKAMLEALTG-------STSNLNALQS-- 244 (938)
Q Consensus 176 ~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f-~~~~wv~~~~~~-~~~~~~~~i~~~l~~-------~~~~~~~~~~-- 244 (938)
..+.++|.|.+|+|||||++.+++. ++.+| +.++++-+++.. .+.++.+++...=.. ...+......
T Consensus 68 ~GQr~~If~~~G~GKTtLa~~i~~~--i~~~~~~~~V~~~iGer~~Ev~e~~~~~~~~~~~~~tvvv~~t~d~~~~~r~~ 145 (274)
T cd01133 68 KGGKIGLFGGAGVGKTVLIMELINN--IAKAHGGYSVFAGVGERTREGNDLYHEMKESGVLSKTALVYGQMNEPPGARAR 145 (274)
T ss_pred cCCEEEEecCCCCChhHHHHHHHHH--HHhcCCCEEEEEEeccCcHHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHHH
Confidence 3467899999999999999999994 55455 456666666544 344555555442111 1111111111
Q ss_pred ---HHHHHHHHh--c-CceEEEEEecCC
Q 002308 245 ---LLISIDESI--A-GKRFLLVLDDVW 266 (938)
Q Consensus 245 ---~~~~l~~~l--~-~~~~LlVlDdv~ 266 (938)
..-.+.+++ + ++.+|+++||+.
T Consensus 146 ~~~~a~~~AEyfr~~~g~~Vl~~~Dslt 173 (274)
T cd01133 146 VALTGLTMAEYFRDEEGQDVLLFIDNIF 173 (274)
T ss_pred HHHHHHHHHHHHHHhcCCeEEEEEeChh
Confidence 112234444 3 899999999984
No 258
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=96.51 E-value=0.013 Score=59.71 Aligned_cols=89 Identities=20% Similarity=0.159 Sum_probs=54.4
Q ss_pred CCeEEEEEEccCCChHHHHHHHHhhhhhhhccc------CeEEEEEeCCCCCHHHHHHHHHHHhcCCC---------CCC
Q 002308 175 KGLHIISIVGMGGIGKTTLAQLACNHVEVKREF------DKTLWVCVSETFDEFRIAKAMLEALTGST---------SNL 239 (938)
Q Consensus 175 ~~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f------~~~~wv~~~~~~~~~~~~~~i~~~l~~~~---------~~~ 239 (938)
....++.|+|.+|+|||++|..++... ...- ..++|++....++...+. ++........ ...
T Consensus 17 ~~g~v~~I~G~~GsGKT~l~~~ia~~~--~~~~~~~g~~~~v~yi~~e~~~~~~rl~-~~~~~~~~~~~~~~~~i~~~~~ 93 (226)
T cd01393 17 PTGRITEIFGEFGSGKTQLCLQLAVEA--QLPGELGGLEGKVVYIDTEGAFRPERLV-QLAVRFGLDPEEVLDNIYVARP 93 (226)
T ss_pred cCCcEEEEeCCCCCChhHHHHHHHHHh--hcccccCCCcceEEEEecCCCCCHHHHH-HHHHHhccchhhhhccEEEEeC
Confidence 356799999999999999999987742 2222 567899988777765543 3333322110 011
Q ss_pred CcHHHHHHHHHHHhc----CceEEEEEecCC
Q 002308 240 NALQSLLISIDESIA----GKRFLLVLDDVW 266 (938)
Q Consensus 240 ~~~~~~~~~l~~~l~----~~~~LlVlDdv~ 266 (938)
.+.++....+.+... .+.-++|+|.+.
T Consensus 94 ~~~~~~~~~l~~~~~~~~~~~~~lvVIDsis 124 (226)
T cd01393 94 YNGEQQLEIVEELERIMSSGRVDLVVVDSVA 124 (226)
T ss_pred CCHHHHHHHHHHHHHHhhcCCeeEEEEcCcc
Confidence 234444444444332 344588899874
No 259
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=96.50 E-value=0.0097 Score=62.59 Aligned_cols=85 Identities=25% Similarity=0.207 Sum_probs=55.1
Q ss_pred CCeEEEEEEccCCChHHHHHHHHhhhhhhhcccCeEEEEEeCCCCCHHHHHHHHHHHhcCC-----CCCCCcHHHHHHHH
Q 002308 175 KGLHIISIVGMGGIGKTTLAQLACNHVEVKREFDKTLWVCVSETFDEFRIAKAMLEALTGS-----TSNLNALQSLLISI 249 (938)
Q Consensus 175 ~~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~-----~~~~~~~~~~~~~l 249 (938)
+..+++-|+|++|+||||||.+++.. ....-..++|++..+.++.. .++.++.. .......++....+
T Consensus 53 p~G~iteI~Gp~GsGKTtLal~~~~~--~~~~g~~~vyId~E~~~~~~-----~a~~lGvd~~~l~v~~p~~~eq~l~i~ 125 (325)
T cd00983 53 PKGRIIEIYGPESSGKTTLALHAIAE--AQKLGGTVAFIDAEHALDPV-----YAKKLGVDLDNLLISQPDTGEQALEIA 125 (325)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHH--HHHcCCCEEEECccccHHHH-----HHHHcCCCHHHheecCCCCHHHHHHHH
Confidence 35689999999999999999998874 33334568899887766653 23333321 11122345555555
Q ss_pred HHHhc-CceEEEEEecCC
Q 002308 250 DESIA-GKRFLLVLDDVW 266 (938)
Q Consensus 250 ~~~l~-~~~~LlVlDdv~ 266 (938)
....+ +..-+||+|.+-
T Consensus 126 ~~li~s~~~~lIVIDSva 143 (325)
T cd00983 126 DSLVRSGAVDLIVVDSVA 143 (325)
T ss_pred HHHHhccCCCEEEEcchH
Confidence 55444 456699999873
No 260
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=96.49 E-value=0.041 Score=66.43 Aligned_cols=185 Identities=15% Similarity=0.159 Sum_probs=95.5
Q ss_pred CceecchhhHHHHHHHHhccCcc-------cCCCeEEEEEEccCCChHHHHHHHHhhhhhhhcccCeEEEEEeCCCCCHH
Q 002308 150 EEICGRVGERNALLSMLLCESSE-------QQKGLHIISIVGMGGIGKTTLAQLACNHVEVKREFDKTLWVCVSETFDEF 222 (938)
Q Consensus 150 ~~~vGr~~~~~~l~~~l~~~~~~-------~~~~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~ 222 (938)
..+.|.+...+.+.+.+.-+-.. +....+-+.++|++|+|||++|+++++. ....| +.+...
T Consensus 453 ~di~g~~~~k~~l~~~v~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lakalA~e--~~~~f-----i~v~~~---- 521 (733)
T TIGR01243 453 SDIGGLEEVKQELREAVEWPLKHPEIFEKMGIRPPKGVLLFGPPGTGKTLLAKAVATE--SGANF-----IAVRGP---- 521 (733)
T ss_pred hhcccHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHh--cCCCE-----EEEehH----
Confidence 45678887777777765421100 0123455889999999999999999984 33222 222211
Q ss_pred HHHHHHHHHhcCCCCCCCcHHHHHHHHHHHhcCceEEEEEecCCCC------Cc-c-----ChhHHHHhhhC--CCCCcE
Q 002308 223 RIAKAMLEALTGSTSNLNALQSLLISIDESIAGKRFLLVLDDVWDG------DY-I-----KWEPFYRCLKK--GLHGSK 288 (938)
Q Consensus 223 ~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~------~~-~-----~~~~l~~~l~~--~~~gs~ 288 (938)
+++....+ .....+...+...-...+.+|++|+++.. .. . ....+...+.. ...+.-
T Consensus 522 ----~l~~~~vG-----ese~~i~~~f~~A~~~~p~iifiDEid~l~~~r~~~~~~~~~~~~~~~lL~~ldg~~~~~~v~ 592 (733)
T TIGR01243 522 ----EILSKWVG-----ESEKAIREIFRKARQAAPAIIFFDEIDAIAPARGARFDTSVTDRIVNQLLTEMDGIQELSNVV 592 (733)
T ss_pred ----HHhhcccC-----cHHHHHHHHHHHHHhcCCEEEEEEChhhhhccCCCCCCccHHHHHHHHHHHHhhcccCCCCEE
Confidence 11111111 01111222222233456789999998531 00 0 01223333332 123445
Q ss_pred EEEEcCChhhhhh-h----cCCceEeCCCCChHHHHHHHHHhhcCCCCCchhhHHHHHHHHHHHhcCCCh-hHHHHH
Q 002308 289 ILITTRKESIVSM-M----RSTDIISIEELAEEECWVLFKRLAFFGRSTEECEKLEQIGQRIARKCKGLP-LAAKTM 359 (938)
Q Consensus 289 ilvTtr~~~v~~~-~----~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~P-lai~~~ 359 (938)
||.||..++.... . .-...+.+...+.++..++|..+..+... ....+ ...+++.+.|.- ..|..+
T Consensus 593 vI~aTn~~~~ld~allRpgRfd~~i~v~~Pd~~~R~~i~~~~~~~~~~-~~~~~----l~~la~~t~g~sgadi~~~ 664 (733)
T TIGR01243 593 VIAATNRPDILDPALLRPGRFDRLILVPPPDEEARKEIFKIHTRSMPL-AEDVD----LEELAEMTEGYTGADIEAV 664 (733)
T ss_pred EEEeCCChhhCCHhhcCCCccceEEEeCCcCHHHHHHHHHHHhcCCCC-CccCC----HHHHHHHcCCCCHHHHHHH
Confidence 6667765543322 1 12457888888889999999876532211 11112 346667776643 334433
No 261
>PTZ00494 tuzin-like protein; Provisional
Probab=96.49 E-value=0.16 Score=54.44 Aligned_cols=171 Identities=15% Similarity=0.127 Sum_probs=106.3
Q ss_pred cCCCCCCceecchhhHHHHHHHHhccCcccCCCeEEEEEEccCCChHHHHHHHHhhhhhhhcccCeEEEEEeCCCCCHHH
Q 002308 144 TSLIDEEEICGRVGERNALLSMLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNHVEVKREFDKTLWVCVSETFDEFR 223 (938)
Q Consensus 144 ~~~~~~~~~vGr~~~~~~l~~~l~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~ 223 (938)
..+..+..+|.|+.|-..+...|...+ ...++++++.|.-|.||++|.+...+.+. -..++|++... ++
T Consensus 365 ~a~a~~~~~V~R~~eE~~vRqvL~qld---~aHPRIvV~TG~~GcGKSslcRsAvrkE~-----~paV~VDVRg~---ED 433 (664)
T PTZ00494 365 LAAAAEAFEVRREDEEALVRSVLTQMA---PSHPRIVALAGGSGGGRCVPCRRAVRVEG-----VALVHVDVGGT---ED 433 (664)
T ss_pred ccccccccccchhhHHHHHHHHHhhcc---CCCCcEEEEecCCCCCchHHHHHHHHHcC-----CCeEEEEecCC---cc
Confidence 334556789999999888888887665 45889999999999999999998877432 35678888764 45
Q ss_pred HHHHHHHHhcCCCCCC--CcH---HHHHHHHHHHhcCceEEEEEecCCCCCcc-ChhHHHHhhhCCCCCcEEEEEcCChh
Q 002308 224 IAKAMLEALTGSTSNL--NAL---QSLLISIDESIAGKRFLLVLDDVWDGDYI-KWEPFYRCLKKGLHGSKILITTRKES 297 (938)
Q Consensus 224 ~~~~i~~~l~~~~~~~--~~~---~~~~~~l~~~l~~~~~LlVlDdv~~~~~~-~~~~l~~~l~~~~~gs~ilvTtr~~~ 297 (938)
-++.+.+.++.+..+. +-+ .+....-+....++.-+||+-==+..+.. .+.+. ..|.....-|.|++----+.
T Consensus 434 tLrsVVKALgV~nve~CGDlLdFI~ea~~~A~~~~~g~~P~lVlkLREGssL~RVYnE~-vaLacDrRlCHvv~EVplES 512 (664)
T PTZ00494 434 TLRSVVRALGVSNVEVCGDLLGFVEEAMRGATVKASDGVPFLVMRLREGSDLGRVYGEV-VSLVSDCQACHIVLAVPMKA 512 (664)
T ss_pred hHHHHHHHhCCCChhhhccHHHHHHHHHHHHHHhcCCCCCEEEEEeccCCcHHHHHHHH-HHHHccchhheeeeechHhh
Confidence 5778888888654332 111 22222222234566666665422111100 11111 22444445667776544333
Q ss_pred hhhh---hcCCceEeCCCCChHHHHHHHHHhh
Q 002308 298 IVSM---MRSTDIISIEELAEEECWVLFKRLA 326 (938)
Q Consensus 298 v~~~---~~~~~~~~l~~L~~~~~~~lf~~~~ 326 (938)
+... ...-..|.+.+|+.++|.++-++..
T Consensus 513 LT~~n~~LPRLDFy~VPnFSr~QAf~YtqH~l 544 (664)
T PTZ00494 513 LTPLNVSSRRLDFYCIPPFSRRQAFAYAEHTL 544 (664)
T ss_pred hchhhccCccceeEecCCcCHHHHHHHHhccc
Confidence 2222 1224689999999999999877653
No 262
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=96.47 E-value=0.013 Score=60.16 Aligned_cols=50 Identities=28% Similarity=0.305 Sum_probs=37.1
Q ss_pred CCeEEEEEEccCCChHHHHHHHHhhhhhhhcc----cCeEEEEEeCCCCCHHHH
Q 002308 175 KGLHIISIVGMGGIGKTTLAQLACNHVEVKRE----FDKTLWVCVSETFDEFRI 224 (938)
Q Consensus 175 ~~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~----f~~~~wv~~~~~~~~~~~ 224 (938)
....++.|+|.+|+|||++|.+++........ -..++|++....++...+
T Consensus 17 ~~g~i~~i~G~~GsGKT~l~~~l~~~~~~~~~~~g~~~~viyi~~e~~~~~~rl 70 (235)
T cd01123 17 ETGSITEIFGEFGSGKTQLCHQLAVTVQLPIELGGLEGKAVYIDTEGTFRPERL 70 (235)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHeeCccccCCCCccEEEEeCCCCcCHHHH
Confidence 35689999999999999999999753222221 367899998887775544
No 263
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=96.45 E-value=0.003 Score=60.40 Aligned_cols=93 Identities=17% Similarity=0.186 Sum_probs=54.1
Q ss_pred CeEEEEEEccCCChHHHHHHHHhhhhhhh-cccCeEEEEEeCCCCCHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHhc
Q 002308 176 GLHIISIVGMGGIGKTTLAQLACNHVEVK-REFDKTLWVCVSETFDEFRIAKAMLEALTGSTSNLNALQSLLISIDESIA 254 (938)
Q Consensus 176 ~~~vv~i~G~~GiGKTtLa~~v~~~~~~~-~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~ 254 (938)
+..++.+.|+.|+|||.+|+.++.. .. +.....+-++.+.-....+. ..++..+...... . +...
T Consensus 2 p~~~~ll~GpsGvGKT~la~~la~~--l~~~~~~~~~~~d~s~~~~~~~~-~~~~~~l~~~~~~--~-------v~~~-- 67 (171)
T PF07724_consen 2 PKSNFLLAGPSGVGKTELAKALAEL--LFVGSERPLIRIDMSEYSEGDDV-ESSVSKLLGSPPG--Y-------VGAE-- 67 (171)
T ss_dssp -SEEEEEESSTTSSHHHHHHHHHHH--HT-SSCCEEEEEEGGGHCSHHHC-SCHCHHHHHHTTC--H-------HHHH--
T ss_pred CEEEEEEECCCCCCHHHHHHHHHHH--hccCCccchHHHhhhcccccchH-Hhhhhhhhhcccc--e-------eecc--
Confidence 3568899999999999999999883 33 34456666676654431111 1111111111100 0 0000
Q ss_pred CceEEEEEecCCCCCc-----------cChhHHHHhhhCC
Q 002308 255 GKRFLLVLDDVWDGDY-----------IKWEPFYRCLKKG 283 (938)
Q Consensus 255 ~~~~LlVlDdv~~~~~-----------~~~~~l~~~l~~~ 283 (938)
..-+|+||+++.... ..|..++..+..+
T Consensus 68 -~~gVVllDEidKa~~~~~~~~~v~~~~V~~~LL~~le~g 106 (171)
T PF07724_consen 68 -EGGVVLLDEIDKAHPSNSGGADVSGEGVQNSLLQLLEGG 106 (171)
T ss_dssp -HHTEEEEETGGGCSHTTTTCSHHHHHHHHHHHHHHHHHS
T ss_pred -chhhhhhHHHhhccccccccchhhHHHHHHHHHHHhccc
Confidence 111999999988877 6677777777543
No 264
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=96.43 E-value=0.0023 Score=57.72 Aligned_cols=22 Identities=41% Similarity=0.537 Sum_probs=20.3
Q ss_pred EEEEEccCCChHHHHHHHHhhh
Q 002308 179 IISIVGMGGIGKTTLAQLACNH 200 (938)
Q Consensus 179 vv~i~G~~GiGKTtLa~~v~~~ 200 (938)
+|+|.|++|+||||+|+.++..
T Consensus 1 vI~I~G~~gsGKST~a~~La~~ 22 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAER 22 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999999883
No 265
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=96.43 E-value=0.014 Score=57.24 Aligned_cols=88 Identities=17% Similarity=0.163 Sum_probs=50.5
Q ss_pred eEEEEEEccCCChHHHHHHHHhhhhhhhcccCeEEEEEeCC-CCCHHHHHHHHHHHhcCCC---CCC-CcHHHHHHHHHH
Q 002308 177 LHIISIVGMGGIGKTTLAQLACNHVEVKREFDKTLWVCVSE-TFDEFRIAKAMLEALTGST---SNL-NALQSLLISIDE 251 (938)
Q Consensus 177 ~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~-~~~~~~~~~~i~~~l~~~~---~~~-~~~~~~~~~l~~ 251 (938)
++++.++|+.|+||||.+.+++.....+ =..+..++... .....+-++..++.++.+. ... ...+...+.+.+
T Consensus 1 p~vi~lvGptGvGKTTt~aKLAa~~~~~--~~~v~lis~D~~R~ga~eQL~~~a~~l~vp~~~~~~~~~~~~~~~~~l~~ 78 (196)
T PF00448_consen 1 PKVIALVGPTGVGKTTTIAKLAARLKLK--GKKVALISADTYRIGAVEQLKTYAEILGVPFYVARTESDPAEIAREALEK 78 (196)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHHHHT--T--EEEEEESTSSTHHHHHHHHHHHHHTEEEEESSTTSCHHHHHHHHHHH
T ss_pred CEEEEEECCCCCchHhHHHHHHHHHhhc--cccceeecCCCCCccHHHHHHHHHHHhccccchhhcchhhHHHHHHHHHH
Confidence 3789999999999999999988854333 33466666532 2344556677777776432 111 222223333433
Q ss_pred HhcCceEEEEEecCC
Q 002308 252 SIAGKRFLLVLDDVW 266 (938)
Q Consensus 252 ~l~~~~~LlVlDdv~ 266 (938)
.-..+.=+|++|=.-
T Consensus 79 ~~~~~~D~vlIDT~G 93 (196)
T PF00448_consen 79 FRKKGYDLVLIDTAG 93 (196)
T ss_dssp HHHTTSSEEEEEE-S
T ss_pred HhhcCCCEEEEecCC
Confidence 322333477778653
No 266
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=96.42 E-value=0.12 Score=54.37 Aligned_cols=59 Identities=12% Similarity=0.107 Sum_probs=38.9
Q ss_pred ceecchhhHHHHHHHHhccCcccCCCeEEEEEEccCCChHHHHHHHHhhhhhhhcccCeEEEEEeCCCCCHH
Q 002308 151 EICGRVGERNALLSMLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNHVEVKREFDKTLWVCVSETFDEF 222 (938)
Q Consensus 151 ~~vGr~~~~~~l~~~l~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~ 222 (938)
.++=..+....+..++.. .+.|.|.|++|+||||+|+.++.. ....| +.|.++...+..
T Consensus 46 ~y~f~~~~~~~vl~~l~~--------~~~ilL~G~pGtGKTtla~~lA~~--l~~~~---~rV~~~~~l~~~ 104 (327)
T TIGR01650 46 AYLFDKATTKAICAGFAY--------DRRVMVQGYHGTGKSTHIEQIAAR--LNWPC---VRVNLDSHVSRI 104 (327)
T ss_pred CccCCHHHHHHHHHHHhc--------CCcEEEEeCCCChHHHHHHHHHHH--HCCCe---EEEEecCCCChh
Confidence 455555566677777753 235999999999999999999883 33222 345555444433
No 267
>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF. Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH
Probab=96.37 E-value=0.018 Score=61.80 Aligned_cols=130 Identities=14% Similarity=0.099 Sum_probs=69.1
Q ss_pred eecchhhHHHHHHHHhccCcccCCCeEEEEEEccCCChHHHHHHHHhhhhhhhcccCeEEEEEeCCCCCHHHHHHHHHHH
Q 002308 152 ICGRVGERNALLSMLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNHVEVKREFDKTLWVCVSETFDEFRIAKAMLEA 231 (938)
Q Consensus 152 ~vGr~~~~~~l~~~l~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~ 231 (938)
++|+...+.++.+.+..-.. ....|.|+|..|+||+++|+.++..... .-...+-|++..-. ...+.. .
T Consensus 1 liG~S~~m~~~~~~~~~~a~----~~~pVLI~GE~GtGK~~lAr~iH~~s~r--~~~pfv~vnc~~~~--~~~l~~---~ 69 (329)
T TIGR02974 1 LIGESNAFLEVLEQVSRLAP----LDRPVLIIGERGTGKELIAARLHYLSKR--WQGPLVKLNCAALS--ENLLDS---E 69 (329)
T ss_pred CCcCCHHHHHHHHHHHHHhC----CCCCEEEECCCCChHHHHHHHHHHhcCc--cCCCeEEEeCCCCC--hHHHHH---H
Confidence 46777777777776654432 3456899999999999999998764211 11223344554322 122221 2
Q ss_pred hcCCCCC-CCcHHH-HHHHHHHHhcCceEEEEEecCCCCCccChhHHHHhhhCCC-----------CCcEEEEEcCC
Q 002308 232 LTGSTSN-LNALQS-LLISIDESIAGKRFLLVLDDVWDGDYIKWEPFYRCLKKGL-----------HGSKILITTRK 295 (938)
Q Consensus 232 l~~~~~~-~~~~~~-~~~~l~~~l~~~~~LlVlDdv~~~~~~~~~~l~~~l~~~~-----------~gs~ilvTtr~ 295 (938)
+.+.... ...... ....+. ....-.|+||++...+......+...+..+. ...|||.||..
T Consensus 70 lfG~~~g~~~ga~~~~~G~~~---~a~gGtL~Ldei~~L~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiI~at~~ 143 (329)
T TIGR02974 70 LFGHEAGAFTGAQKRHQGRFE---RADGGTLFLDELATASLLVQEKLLRVIEYGEFERVGGSQTLQVDVRLVCATNA 143 (329)
T ss_pred HhccccccccCcccccCCchh---hCCCCEEEeCChHhCCHHHHHHHHHHHHcCcEEecCCCceeccceEEEEechh
Confidence 2211100 000000 000011 1223458999998766555666777765432 23578887753
No 268
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=96.36 E-value=0.011 Score=68.59 Aligned_cols=153 Identities=16% Similarity=0.219 Sum_probs=87.5
Q ss_pred CceecchhhHHHHHHHHhccCcccCCCeEEEEEEccCCChHHHHHHHHhhhhhhhc-cc------CeEEEEEeCCCCCHH
Q 002308 150 EEICGRVGERNALLSMLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNHVEVKR-EF------DKTLWVCVSETFDEF 222 (938)
Q Consensus 150 ~~~vGr~~~~~~l~~~l~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~-~f------~~~~wv~~~~~~~~~ 222 (938)
+.++||++|+.++++.|..... .. -.++|.+|||||++|.-++.. +.. .- ..++-+++
T Consensus 170 DPvIGRd~EI~r~iqIL~RR~K----NN--PvLiGEpGVGKTAIvEGLA~r--Iv~g~VP~~L~~~~i~sLD~------- 234 (786)
T COG0542 170 DPVIGRDEEIRRTIQILSRRTK----NN--PVLVGEPGVGKTAIVEGLAQR--IVNGDVPESLKDKRIYSLDL------- 234 (786)
T ss_pred CCCcChHHHHHHHHHHHhccCC----CC--CeEecCCCCCHHHHHHHHHHH--HhcCCCCHHHcCCEEEEecH-------
Confidence 4589999999999999986432 12 257899999999999888773 321 11 11111111
Q ss_pred HHHHHHHHHhcCCCCCCCcHHHHHHHHHHHhc-CceEEEEEecCCCC---------CccChhHHHHhhhCCCCCcEEEEE
Q 002308 223 RIAKAMLEALTGSTSNLNALQSLLISIDESIA-GKRFLLVLDDVWDG---------DYIKWEPFYRCLKKGLHGSKILIT 292 (938)
Q Consensus 223 ~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~-~~~~LlVlDdv~~~---------~~~~~~~l~~~l~~~~~gs~ilvT 292 (938)
..-..+ ..-.-+.++..+.+-+.++ .++..+++|.++.. ..+.-.-+..+|..+.-. .|=.|
T Consensus 235 ------g~LvAG-akyRGeFEeRlk~vl~ev~~~~~vILFIDEiHtiVGAG~~~G~a~DAaNiLKPaLARGeL~-~IGAT 306 (786)
T COG0542 235 ------GSLVAG-AKYRGEFEERLKAVLKEVEKSKNVILFIDEIHTIVGAGATEGGAMDAANLLKPALARGELR-CIGAT 306 (786)
T ss_pred ------HHHhcc-ccccCcHHHHHHHHHHHHhcCCCeEEEEechhhhcCCCcccccccchhhhhHHHHhcCCeE-EEEec
Confidence 111111 1122344444444444443 45899999998541 112222344444443222 24556
Q ss_pred cCChhhhhhh-------cCCceEeCCCCChHHHHHHHHHhh
Q 002308 293 TRKESIVSMM-------RSTDIISIEELAEEECWVLFKRLA 326 (938)
Q Consensus 293 tr~~~v~~~~-------~~~~~~~l~~L~~~~~~~lf~~~~ 326 (938)
|-++ .-..+ ..-+.+.+..-+.+++..+++-..
T Consensus 307 T~~E-YRk~iEKD~AL~RRFQ~V~V~EPs~e~ti~ILrGlk 346 (786)
T COG0542 307 TLDE-YRKYIEKDAALERRFQKVLVDEPSVEDTIAILRGLK 346 (786)
T ss_pred cHHH-HHHHhhhchHHHhcCceeeCCCCCHHHHHHHHHHHH
Confidence 6543 22111 224688999999999999887643
No 269
>TIGR02238 recomb_DMC1 meiotic recombinase Dmc1. This model describes DMC1, a subfamily of a larger family of DNA repair and recombination proteins. It is eukaryotic only and most closely related to eukaryotic RAD51. It also resembles archaeal RadA (TIGR02236) and RadB (TIGR02237) and bacterial RecA (TIGR02012). It has been characterized for human as a recombinase active only in meiosis.
Probab=96.35 E-value=0.011 Score=62.40 Aligned_cols=59 Identities=24% Similarity=0.304 Sum_probs=42.9
Q ss_pred CCeEEEEEEccCCChHHHHHHHHhhhhhhh----cccCeEEEEEeCCCCCHHHHHHHHHHHhcC
Q 002308 175 KGLHIISIVGMGGIGKTTLAQLACNHVEVK----REFDKTLWVCVSETFDEFRIAKAMLEALTG 234 (938)
Q Consensus 175 ~~~~vv~i~G~~GiGKTtLa~~v~~~~~~~----~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~ 234 (938)
+...++-|+|++|+|||+|+..++-..... ..=..++|++....++.+++. ++++.++.
T Consensus 94 ~~G~iteI~G~~GsGKTql~lqla~~~~~~~~~gg~~~~vvYIdtE~~f~~eRi~-~~a~~~g~ 156 (313)
T TIGR02238 94 ESMSITEVFGEFRCGKTQLSHTLCVTAQLPREMGGGNGKVAYIDTEGTFRPDRIR-AIAERFGV 156 (313)
T ss_pred cCCeEEEEECCCCCCcCHHHHHHHHHHhcchhhcCCCCeEEEEEcCCCCCHHHHH-HHHHHcCC
Confidence 356889999999999999998877532221 112478999999988888765 45666543
No 270
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=96.32 E-value=0.014 Score=61.30 Aligned_cols=85 Identities=22% Similarity=0.204 Sum_probs=55.0
Q ss_pred CCeEEEEEEccCCChHHHHHHHHhhhhhhhcccCeEEEEEeCCCCCHHHHHHHHHHHhcCCC-----CCCCcHHHHHHHH
Q 002308 175 KGLHIISIVGMGGIGKTTLAQLACNHVEVKREFDKTLWVCVSETFDEFRIAKAMLEALTGST-----SNLNALQSLLISI 249 (938)
Q Consensus 175 ~~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~-----~~~~~~~~~~~~l 249 (938)
+..+++-|+|++|+||||||.+++.. ....-..++|++..+.++.. .++.++... ......++....+
T Consensus 53 p~G~iteI~G~~GsGKTtLaL~~~~~--~~~~g~~v~yId~E~~~~~~-----~a~~lGvd~~~l~v~~p~~~eq~l~~~ 125 (321)
T TIGR02012 53 PRGRIIEIYGPESSGKTTLALHAIAE--AQKAGGTAAFIDAEHALDPV-----YARKLGVDIDNLLVSQPDTGEQALEIA 125 (321)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHH--HHHcCCcEEEEcccchhHHH-----HHHHcCCCHHHeEEecCCCHHHHHHHH
Confidence 45689999999999999999998774 33333567899877765543 234443221 1123445555555
Q ss_pred HHHhc-CceEEEEEecCC
Q 002308 250 DESIA-GKRFLLVLDDVW 266 (938)
Q Consensus 250 ~~~l~-~~~~LlVlDdv~ 266 (938)
....+ +..-+||+|.+.
T Consensus 126 ~~li~~~~~~lIVIDSv~ 143 (321)
T TIGR02012 126 ETLVRSGAVDIIVVDSVA 143 (321)
T ss_pred HHHhhccCCcEEEEcchh
Confidence 55444 456699999974
No 271
>COG1875 NYN ribonuclease and ATPase of PhoH family domains [General function prediction only]
Probab=96.31 E-value=0.022 Score=58.97 Aligned_cols=136 Identities=24% Similarity=0.319 Sum_probs=74.4
Q ss_pred eecchhhHHHHHHHHhccCcccCCCeEEEEEEccCCChHHHHHHHHhhhhh-hhcccCeEEEE----EeCCCCC------
Q 002308 152 ICGRVGERNALLSMLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNHVE-VKREFDKTLWV----CVSETFD------ 220 (938)
Q Consensus 152 ~vGr~~~~~~l~~~l~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~v~~~~~-~~~~f~~~~wv----~~~~~~~------ 220 (938)
+-+|..+..-..++|. +++...|.+.|.+|.|||.||.++.-... .+..|..++-. .++++-.
T Consensus 226 i~prn~eQ~~ALdlLl------d~dI~lV~L~G~AGtGKTlLALaAgleqv~e~~~y~KiiVtRp~vpvG~dIGfLPG~e 299 (436)
T COG1875 226 IRPRNAEQRVALDLLL------DDDIDLVSLGGKAGTGKTLLALAAGLEQVLERKRYRKIIVTRPTVPVGEDIGFLPGTE 299 (436)
T ss_pred cCcccHHHHHHHHHhc------CCCCCeEEeeccCCccHhHHHHHHHHHHHHHHhhhceEEEecCCcCcccccCcCCCch
Confidence 3446777777777777 44688999999999999999987665432 23344332221 2222110
Q ss_pred HHHH---HHHHHH---HhcCCCCCCCcHHHHHHHHH---------HHhcCc---eEEEEEecCCCCCccChhHHHHhhhC
Q 002308 221 EFRI---AKAMLE---ALTGSTSNLNALQSLLISID---------ESIAGK---RFLLVLDDVWDGDYIKWEPFYRCLKK 282 (938)
Q Consensus 221 ~~~~---~~~i~~---~l~~~~~~~~~~~~~~~~l~---------~~l~~~---~~LlVlDdv~~~~~~~~~~l~~~l~~ 282 (938)
.+++ ++.|.. .+.... ......+...+. .+.+|+ +-++|+|...+-. -.++...+-.
T Consensus 300 EeKm~PWmq~i~DnLE~L~~~~--~~~~~~l~~~l~~~~iev~alt~IRGRSl~~~FiIIDEaQNLT---pheikTiltR 374 (436)
T COG1875 300 EEKMGPWMQAIFDNLEVLFSPN--EPGDRALEEILSRGRIEVEALTYIRGRSLPDSFIIIDEAQNLT---PHELKTILTR 374 (436)
T ss_pred hhhccchHHHHHhHHHHHhccc--ccchHHHHHHHhccceeeeeeeeecccccccceEEEehhhccC---HHHHHHHHHh
Confidence 1111 111211 111111 011111111111 123343 4599999997754 3455666667
Q ss_pred CCCCcEEEEEcCChhh
Q 002308 283 GLHGSKILITTRKESI 298 (938)
Q Consensus 283 ~~~gs~ilvTtr~~~v 298 (938)
.+.||||+.|--..++
T Consensus 375 ~G~GsKIVl~gd~aQi 390 (436)
T COG1875 375 AGEGSKIVLTGDPAQI 390 (436)
T ss_pred ccCCCEEEEcCCHHHc
Confidence 7899999998765443
No 272
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=96.31 E-value=0.00041 Score=80.21 Aligned_cols=80 Identities=26% Similarity=0.224 Sum_probs=41.6
Q ss_pred hccCCCcCCceEEEEecCCCCCCCCCccchHHHHhhCCCCCCCCeEEEeeecCCCCCCCchhccCCCCEEEEecCCCCC-
Q 002308 717 ELDKKKYLSRLRLEFDKKGGGGGRRKNEDDQLLLEALQPPLNLKELEIHYYGGNTVFPSWMASLTNLKSLDLCFCENCE- 795 (938)
Q Consensus 717 ~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~- 795 (938)
....+++|+.|+|+++.... +..+......+++|+.|.+..... ++.++.+.+..+....
T Consensus 290 i~~~~~~L~~L~l~~c~~~~---------d~~l~~~~~~c~~l~~l~~~~~~~----------c~~l~~~~l~~~~~~~~ 350 (482)
T KOG1947|consen 290 IAERCPSLRELDLSGCHGLT---------DSGLEALLKNCPNLRELKLLSLNG----------CPSLTDLSLSGLLTLTS 350 (482)
T ss_pred HHHhcCcccEEeeecCccch---------HHHHHHHHHhCcchhhhhhhhcCC----------CccHHHHHHHHhhccCc
Confidence 44556667777777665432 222333344466666655443321 4445555555543221
Q ss_pred -cCCC--CCCCCccceeeccccc
Q 002308 796 -QLPP--LGKLPSLEQLFISYMS 815 (938)
Q Consensus 796 -~l~~--l~~l~~L~~L~L~~~~ 815 (938)
.+.. +..+++|+.+.+.+|.
T Consensus 351 d~~~~~~~~~~~~l~~~~l~~~~ 373 (482)
T KOG1947|consen 351 DDLAELILRSCPKLTDLSLSYCG 373 (482)
T ss_pred hhHhHHHHhcCCCcchhhhhhhh
Confidence 1221 5666777777776655
No 273
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=96.28 E-value=0.038 Score=53.79 Aligned_cols=121 Identities=17% Similarity=0.208 Sum_probs=66.5
Q ss_pred CeEEEEEEccCCChHHHHHHHHhhhhhhhcccCeEEEEEeC--CCCCHHHHH------HHHHHHhcCC------CCCCCc
Q 002308 176 GLHIISIVGMGGIGKTTLAQLACNHVEVKREFDKTLWVCVS--ETFDEFRIA------KAMLEALTGS------TSNLNA 241 (938)
Q Consensus 176 ~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~--~~~~~~~~~------~~i~~~l~~~------~~~~~~ 241 (938)
...+++|.|..|.|||||++.++... ......+++.-. ...+..... .++++.++.. ....+.
T Consensus 24 ~G~~~~l~G~nGsGKStLl~~i~G~~---~~~~G~v~~~g~~~~~~~~~~~~~~i~~~~q~l~~~gl~~~~~~~~~~LS~ 100 (180)
T cd03214 24 AGEIVGILGPNGAGKSTLLKTLAGLL---KPSSGEILLDGKDLASLSPKELARKIAYVPQALELLGLAHLADRPFNELSG 100 (180)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC---CCCCcEEEECCEECCcCCHHHHHHHHhHHHHHHHHcCCHhHhcCCcccCCH
Confidence 34689999999999999999998732 223444444311 111222211 1234444322 112233
Q ss_pred HHHHHHHHHHHhcCceEEEEEecCCC-CCccChhHHHHhhhCC-CC-CcEEEEEcCChhhh
Q 002308 242 LQSLLISIDESIAGKRFLLVLDDVWD-GDYIKWEPFYRCLKKG-LH-GSKILITTRKESIV 299 (938)
Q Consensus 242 ~~~~~~~l~~~l~~~~~LlVlDdv~~-~~~~~~~~l~~~l~~~-~~-gs~ilvTtr~~~v~ 299 (938)
.+...-.+.+.+-..+-++++|+--. .|......+...+... .. |..||++|.+....
T Consensus 101 G~~qrl~laral~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tiii~sh~~~~~ 161 (180)
T cd03214 101 GERQRVLLARALAQEPPILLLDEPTSHLDIAHQIELLELLRRLARERGKTVVMVLHDLNLA 161 (180)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHH
Confidence 33333445566667778999998743 2333344455555432 22 56788888876544
No 274
>TIGR01817 nifA Nif-specific regulatory protein. This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.
Probab=96.28 E-value=0.025 Score=65.69 Aligned_cols=134 Identities=13% Similarity=0.106 Sum_probs=75.7
Q ss_pred CCCceecchhhHHHHHHHHhccCcccCCCeEEEEEEccCCChHHHHHHHHhhhhhhhcccCeEEEEEeCCCCCHHHHHHH
Q 002308 148 DEEEICGRVGERNALLSMLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNHVEVKREFDKTLWVCVSETFDEFRIAKA 227 (938)
Q Consensus 148 ~~~~~vGr~~~~~~l~~~l~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~ 227 (938)
....++|....+.++.+.+..-.. ....|.|+|..|+|||++|+.+++.... .-...+.|++..-.+ ..+.
T Consensus 194 ~~~~liG~s~~~~~~~~~~~~~a~----~~~pvli~Ge~GtGK~~lA~~ih~~s~r--~~~pfv~i~c~~~~~--~~~~- 264 (534)
T TIGR01817 194 KEDGIIGKSPAMRQVVDQARVVAR----SNSTVLLRGESGTGKELIAKAIHYLSPR--AKRPFVKVNCAALSE--TLLE- 264 (534)
T ss_pred ccCceEECCHHHHHHHHHHHHHhC----cCCCEEEECCCCccHHHHHHHHHHhCCC--CCCCeEEeecCCCCH--HHHH-
Confidence 346799999999998887765432 3456789999999999999999874211 112334455544321 2221
Q ss_pred HHHHhcCCCCCC-CcH-HHHHHHHHHHhcCceEEEEEecCCCCCccChhHHHHhhhCCC-----------CCcEEEEEcC
Q 002308 228 MLEALTGSTSNL-NAL-QSLLISIDESIAGKRFLLVLDDVWDGDYIKWEPFYRCLKKGL-----------HGSKILITTR 294 (938)
Q Consensus 228 i~~~l~~~~~~~-~~~-~~~~~~l~~~l~~~~~LlVlDdv~~~~~~~~~~l~~~l~~~~-----------~gs~ilvTtr 294 (938)
..+.+..... ... ......+ .....-.|+||++..........+...+..+. ...+||.||.
T Consensus 265 --~~lfg~~~~~~~~~~~~~~g~~---~~a~~GtL~ldei~~L~~~~Q~~Ll~~l~~~~~~~~~~~~~~~~~~riI~~s~ 339 (534)
T TIGR01817 265 --SELFGHEKGAFTGAIAQRKGRF---ELADGGTLFLDEIGEISPAFQAKLLRVLQEGEFERVGGNRTLKVDVRLVAATN 339 (534)
T ss_pred --HHHcCCCCCccCCCCcCCCCcc---cccCCCeEEEechhhCCHHHHHHHHHHHhcCcEEECCCCceEeecEEEEEeCC
Confidence 2222211100 000 0000000 01233468899998876666677777775432 1357888775
Q ss_pred C
Q 002308 295 K 295 (938)
Q Consensus 295 ~ 295 (938)
.
T Consensus 340 ~ 340 (534)
T TIGR01817 340 R 340 (534)
T ss_pred C
Confidence 4
No 275
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=96.28 E-value=0.021 Score=59.86 Aligned_cols=88 Identities=17% Similarity=0.189 Sum_probs=46.5
Q ss_pred CeEEEEEEccCCChHHHHHHHHhhhhhhhcccCeEEEEEeCCCC-CHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHhc
Q 002308 176 GLHIISIVGMGGIGKTTLAQLACNHVEVKREFDKTLWVCVSETF-DEFRIAKAMLEALTGSTSNLNALQSLLISIDESIA 254 (938)
Q Consensus 176 ~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~ 254 (938)
..++++|+|+.|+||||++..++.....+..-..+..|+..... .....+....+.++.+.....+..++...+.. +.
T Consensus 193 ~~~vi~~vGptGvGKTTt~~kLa~~~~~~~g~~~V~li~~D~~r~~a~eql~~~~~~~~~p~~~~~~~~~l~~~l~~-~~ 271 (282)
T TIGR03499 193 QGGVIALVGPTGVGKTTTLAKLAARFVLEHGNKKVALITTDTYRIGAVEQLKTYAKILGVPVKVARDPKELRKALDR-LR 271 (282)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHHcCCCeEEEEECCccchhHHHHHHHHHHHhCCceeccCCHHHHHHHHHH-cc
Confidence 46799999999999999999988754333111245555543211 12222333333333332222333444444443 23
Q ss_pred CceEEEEEecC
Q 002308 255 GKRFLLVLDDV 265 (938)
Q Consensus 255 ~~~~LlVlDdv 265 (938)
+ .=+|++|..
T Consensus 272 ~-~d~vliDt~ 281 (282)
T TIGR03499 272 D-KDLILIDTA 281 (282)
T ss_pred C-CCEEEEeCC
Confidence 3 347777753
No 276
>KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones]
Probab=96.27 E-value=0.039 Score=65.20 Aligned_cols=122 Identities=15% Similarity=0.199 Sum_probs=78.1
Q ss_pred ceecchhhHHHHHHHHhccCcccCC--CeEEEEEEccCCChHHHHHHHHhhhhhhhcccCeEEEEEeCCCCCHHHHHHHH
Q 002308 151 EICGRVGERNALLSMLLCESSEQQK--GLHIISIVGMGGIGKTTLAQLACNHVEVKREFDKTLWVCVSETFDEFRIAKAM 228 (938)
Q Consensus 151 ~~vGr~~~~~~l~~~l~~~~~~~~~--~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i 228 (938)
.++|.++.+..|.+++.....+-.. +.....+.|+.|+|||.||++++.. +-+..+..+-++.++. ..
T Consensus 563 ~V~gQ~eAv~aIa~AI~~sr~gl~~~~~~awflflGpdgvGKt~lAkaLA~~--~Fgse~~~IriDmse~------~e-- 632 (898)
T KOG1051|consen 563 RVIGQDEAVAAIAAAIRRSRAGLKDPNPDAWFLFLGPDGVGKTELAKALAEY--VFGSEENFIRLDMSEF------QE-- 632 (898)
T ss_pred hccchHHHHHHHHHHHHhhhcccCCCCCCeEEEEECCCchhHHHHHHHHHHH--HcCCccceEEechhhh------hh--
Confidence 4788888888888888765432222 5677889999999999999999883 3333445555555542 11
Q ss_pred HHHhcCCCCCCCcHHHHHHHHHHHhcCceE-EEEEecCCCCCccChhHHHHhhhCC
Q 002308 229 LEALTGSTSNLNALQSLLISIDESIAGKRF-LLVLDDVWDGDYIKWEPFYRCLKKG 283 (938)
Q Consensus 229 ~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~-LlVlDdv~~~~~~~~~~l~~~l~~~ 283 (938)
..++.+.++.-.. .+....+.+.++.++| +|.||||+..+......+...+..+
T Consensus 633 vskligsp~gyvG-~e~gg~LteavrrrP~sVVLfdeIEkAh~~v~n~llq~lD~G 687 (898)
T KOG1051|consen 633 VSKLIGSPPGYVG-KEEGGQLTEAVKRRPYSVVLFEEIEKAHPDVLNILLQLLDRG 687 (898)
T ss_pred hhhccCCCccccc-chhHHHHHHHHhcCCceEEEEechhhcCHHHHHHHHHHHhcC
Confidence 3333333222211 2223356666777665 7789999888776666666776654
No 277
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.26 E-value=0.00018 Score=70.55 Aligned_cols=63 Identities=22% Similarity=0.114 Sum_probs=29.3
Q ss_pred CCCCCCeEEEeeecCCCCCCCchhccCCCCEEEEecCCCCCc--CCCCCCCCccceeecccccCceE
Q 002308 755 PPLNLKELEIHYYGGNTVFPSWMASLTNLKSLDLCFCENCEQ--LPPLGKLPSLEQLFISYMSSVKR 819 (938)
Q Consensus 755 ~~~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~--l~~l~~l~~L~~L~L~~~~~l~~ 819 (938)
.++.|+.|.|+-|.++. + ..+..|++|+.|+|..|.+.+. +.-+.++|+|+.|.|..|+....
T Consensus 39 kMp~lEVLsLSvNkIss-L-~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL~ENPCc~~ 103 (388)
T KOG2123|consen 39 KMPLLEVLSLSVNKISS-L-APLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWLDENPCCGE 103 (388)
T ss_pred hcccceeEEeecccccc-c-hhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhhccCCcccc
Confidence 34455555555555554 2 2234455555555555533221 11144555555555555554333
No 278
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.25 E-value=0.029 Score=60.70 Aligned_cols=25 Identities=28% Similarity=0.299 Sum_probs=22.1
Q ss_pred CeEEEEEEccCCChHHHHHHHHhhh
Q 002308 176 GLHIISIVGMGGIGKTTLAQLACNH 200 (938)
Q Consensus 176 ~~~vv~i~G~~GiGKTtLa~~v~~~ 200 (938)
...++.++|++|+||||++..++..
T Consensus 222 ~~~vi~lvGptGvGKTTtaaKLA~~ 246 (432)
T PRK12724 222 QRKVVFFVGPTGSGKTTSIAKLAAK 246 (432)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 3578999999999999999999874
No 279
>PRK09354 recA recombinase A; Provisional
Probab=96.20 E-value=0.02 Score=60.79 Aligned_cols=85 Identities=24% Similarity=0.216 Sum_probs=56.3
Q ss_pred CCeEEEEEEccCCChHHHHHHHHhhhhhhhcccCeEEEEEeCCCCCHHHHHHHHHHHhcCCC-----CCCCcHHHHHHHH
Q 002308 175 KGLHIISIVGMGGIGKTTLAQLACNHVEVKREFDKTLWVCVSETFDEFRIAKAMLEALTGST-----SNLNALQSLLISI 249 (938)
Q Consensus 175 ~~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~-----~~~~~~~~~~~~l 249 (938)
+..+++-|+|++|+||||||.+++.. ....=..++|++..+.++.. .++.++... ......++....+
T Consensus 58 p~G~IteI~G~~GsGKTtLal~~~~~--~~~~G~~~~yId~E~s~~~~-----~a~~lGvdld~lli~qp~~~Eq~l~i~ 130 (349)
T PRK09354 58 PRGRIVEIYGPESSGKTTLALHAIAE--AQKAGGTAAFIDAEHALDPV-----YAKKLGVDIDNLLVSQPDTGEQALEIA 130 (349)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHH--HHHcCCcEEEECCccchHHH-----HHHHcCCCHHHeEEecCCCHHHHHHHH
Confidence 45689999999999999999998874 33334678899988877753 334443221 1122355555555
Q ss_pred HHHhc-CceEEEEEecCC
Q 002308 250 DESIA-GKRFLLVLDDVW 266 (938)
Q Consensus 250 ~~~l~-~~~~LlVlDdv~ 266 (938)
...++ ++.-+||+|.|-
T Consensus 131 ~~li~s~~~~lIVIDSva 148 (349)
T PRK09354 131 DTLVRSGAVDLIVVDSVA 148 (349)
T ss_pred HHHhhcCCCCEEEEeChh
Confidence 55544 456699999984
No 280
>PRK15455 PrkA family serine protein kinase; Provisional
Probab=96.19 E-value=0.0039 Score=69.32 Aligned_cols=50 Identities=20% Similarity=0.240 Sum_probs=40.9
Q ss_pred ceecchhhHHHHHHHHhccCcccCCCeEEEEEEccCCChHHHHHHHHhhh
Q 002308 151 EICGRVGERNALLSMLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNH 200 (938)
Q Consensus 151 ~~vGr~~~~~~l~~~l~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~v~~~ 200 (938)
+++|.++.+++|++.|...........+++.++|++|+||||||+.+++-
T Consensus 77 d~yGlee~ieriv~~l~~Aa~gl~~~~~IL~LvGPpG~GKSsLa~~la~~ 126 (644)
T PRK15455 77 EFYGMEEAIEQIVSYFRHAAQGLEEKKQILYLLGPVGGGKSSLAERLKSL 126 (644)
T ss_pred cccCcHHHHHHHHHHHHHHHHhcCCCCceEEEecCCCCCchHHHHHHHHH
Confidence 58999999999999984332222445689999999999999999999883
No 281
>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional
Probab=96.19 E-value=0.015 Score=62.38 Aligned_cols=134 Identities=13% Similarity=0.087 Sum_probs=73.4
Q ss_pred CceecchhhHHHHHHHHhccCcccCCCeEEEEEEccCCChHHHHHHHHhhhhhhhcccCeEEEEEeCCCCCHHHHHHHHH
Q 002308 150 EEICGRVGERNALLSMLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNHVEVKREFDKTLWVCVSETFDEFRIAKAML 229 (938)
Q Consensus 150 ~~~vGr~~~~~~l~~~l~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 229 (938)
..++|+...+.++.+.+..-.. ....|.|.|..|+||+++|+.+...... .-...+.|++.... ...+...+.
T Consensus 6 ~~liG~S~~~~~~~~~i~~~a~----~~~pVlI~GE~GtGK~~lA~~iH~~s~r--~~~pfv~v~c~~~~-~~~~~~~lf 78 (326)
T PRK11608 6 DNLLGEANSFLEVLEQVSRLAP----LDKPVLIIGERGTGKELIASRLHYLSSR--WQGPFISLNCAALN-ENLLDSELF 78 (326)
T ss_pred CccEECCHHHHHHHHHHHHHhC----CCCCEEEECCCCCcHHHHHHHHHHhCCc--cCCCeEEEeCCCCC-HHHHHHHHc
Confidence 3589999888888887765432 3456899999999999999998763111 11233445555422 222222221
Q ss_pred HHhcCCCCCCCcHHHHHHHHHHHhcCceEEEEEecCCCCCccChhHHHHhhhCCC-----------CCcEEEEEcCC
Q 002308 230 EALTGSTSNLNALQSLLISIDESIAGKRFLLVLDDVWDGDYIKWEPFYRCLKKGL-----------HGSKILITTRK 295 (938)
Q Consensus 230 ~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~~~~~~~l~~~l~~~~-----------~gs~ilvTtr~ 295 (938)
..-......... .....+. ....=.|+|||+..........+...+..+. ...|||.||..
T Consensus 79 g~~~~~~~g~~~--~~~g~l~---~a~gGtL~l~~i~~L~~~~Q~~L~~~l~~~~~~~~g~~~~~~~~~RiI~~s~~ 150 (326)
T PRK11608 79 GHEAGAFTGAQK--RHPGRFE---RADGGTLFLDELATAPMLVQEKLLRVIEYGELERVGGSQPLQVNVRLVCATNA 150 (326)
T ss_pred cccccccCCccc--ccCCchh---ccCCCeEEeCChhhCCHHHHHHHHHHHhcCcEEeCCCCceeeccEEEEEeCch
Confidence 100000000000 0001111 1122357899998876666677777765432 13578887764
No 282
>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated
Probab=96.18 E-value=0.016 Score=55.34 Aligned_cols=80 Identities=15% Similarity=0.226 Sum_probs=42.9
Q ss_pred EEEEEccCCChHHHHHHHHhhhhhhhcccCeEEEEEeCCCCCHHHHHHHHHHHhcCCCCCCCcHH---HHHHHHHHHhcC
Q 002308 179 IISIVGMGGIGKTTLAQLACNHVEVKREFDKTLWVCVSETFDEFRIAKAMLEALTGSTSNLNALQ---SLLISIDESIAG 255 (938)
Q Consensus 179 vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~---~~~~~l~~~l~~ 255 (938)
++.|.|.+|+||||+|..+... .. ..++++.-....+ .+..+.|.......+..-...+ .+...+.....+
T Consensus 3 ~ili~G~~~sGKS~~a~~l~~~--~~---~~~~~iat~~~~~-~e~~~ri~~h~~~R~~~w~t~E~~~~l~~~i~~~~~~ 76 (170)
T PRK05800 3 LILVTGGARSGKSRFAERLAAQ--SG---LQVLYIATAQPFD-DEMAARIAHHRQRRPAHWQTVEEPLDLAELLRADAAP 76 (170)
T ss_pred EEEEECCCCccHHHHHHHHHHH--cC---CCcEeCcCCCCCh-HHHHHHHHHHHhcCCCCCeEecccccHHHHHHhhcCC
Confidence 6899999999999999998763 11 1234444444333 3445555443332222111111 223334332332
Q ss_pred ceEEEEEecC
Q 002308 256 KRFLLVLDDV 265 (938)
Q Consensus 256 ~~~LlVlDdv 265 (938)
.-++++|.+
T Consensus 77 -~~~VlID~L 85 (170)
T PRK05800 77 -GRCVLVDCL 85 (170)
T ss_pred -CCEEEehhH
Confidence 337889986
No 283
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=96.17 E-value=0.008 Score=59.21 Aligned_cols=109 Identities=22% Similarity=0.257 Sum_probs=53.0
Q ss_pred eEEEEEEccCCChHHHHHHHHhhhhhhhcccCeEEEEEeCCCCCHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHH-h--
Q 002308 177 LHIISIVGMGGIGKTTLAQLACNHVEVKREFDKTLWVCVSETFDEFRIAKAMLEALTGSTSNLNALQSLLISIDES-I-- 253 (938)
Q Consensus 177 ~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~-l-- 253 (938)
-+++.|.|.+|+||||++..+....... ...+.+..... .....+.+..+.. ...+.......... .
T Consensus 18 ~~~~~l~G~aGtGKT~~l~~~~~~~~~~---g~~v~~~apT~----~Aa~~L~~~~~~~---a~Ti~~~l~~~~~~~~~~ 87 (196)
T PF13604_consen 18 DRVSVLQGPAGTGKTTLLKALAEALEAA---GKRVIGLAPTN----KAAKELREKTGIE---AQTIHSFLYRIPNGDDEG 87 (196)
T ss_dssp CSEEEEEESTTSTHHHHHHHHHHHHHHT---T--EEEEESSH----HHHHHHHHHHTS----EEEHHHHTTEECCEECCS
T ss_pred CeEEEEEECCCCCHHHHHHHHHHHHHhC---CCeEEEECCcH----HHHHHHHHhhCcc---hhhHHHHHhcCCcccccc
Confidence 3578899999999999999988743322 23333333332 2222233332211 01111000000000 0
Q ss_pred ---cCceEEEEEecCCCCCccChhHHHHhhhCCCCCcEEEEEcCChh
Q 002308 254 ---AGKRFLLVLDDVWDGDYIKWEPFYRCLKKGLHGSKILITTRKES 297 (938)
Q Consensus 254 ---~~~~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtr~~~ 297 (938)
..++-+||+|++.-.+...+..+....+. .|+|+|+.--..+
T Consensus 88 ~~~~~~~~vliVDEasmv~~~~~~~ll~~~~~--~~~klilvGD~~Q 132 (196)
T PF13604_consen 88 RPELPKKDVLIVDEASMVDSRQLARLLRLAKK--SGAKLILVGDPNQ 132 (196)
T ss_dssp SCC-TSTSEEEESSGGG-BHHHHHHHHHHS-T---T-EEEEEE-TTS
T ss_pred cccCCcccEEEEecccccCHHHHHHHHHHHHh--cCCEEEEECCcch
Confidence 12334999999977665555555555554 5778887665443
No 284
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=96.15 E-value=0.00052 Score=79.28 Aligned_cols=241 Identities=21% Similarity=0.269 Sum_probs=116.0
Q ss_pred CCCCccEEEcCCCCCccc--ccccccccCccceeecCCC-cccccCCccCCCCCCCcccCeeEecCCCCCCCCccccccc
Q 002308 613 ELYNLEKLDISGCSDLRE--LPKGIGKLINMKHLLNSGT-RSLRYMPVGIGRLTGLRTLGEFHVSAGGGVDGSKACRLES 689 (938)
Q Consensus 613 ~l~~L~~L~l~~~~~l~~--lp~~i~~l~~L~~L~l~~~-~~~~~~p~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~ 689 (938)
.+++|+.|.+.+|..+.. +-.....+++|+.|++++| ......+... ......
T Consensus 186 ~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~------------------------~~~~~~ 241 (482)
T KOG1947|consen 186 SCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLL------------------------LLLLSI 241 (482)
T ss_pred hCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHh------------------------hhhhhh
Confidence 367888888888876654 3345667788888888774 1111111000 001223
Q ss_pred ccccccCcceeecCcCCCCChhhhhhhhc-cCCCcCCceEEEEec-CCCCCCCCCccchHHHHhhCCCCCCCCeEEEeee
Q 002308 690 LKNLEHLQVCCIRRLGDVSDVGEAKLLEL-DKKKYLSRLRLEFDK-KGGGGGRRKNEDDQLLLEALQPPLNLKELEIHYY 767 (938)
Q Consensus 690 l~~L~~L~l~~~~~~~~~~~~~~~~~~~l-~~~~~L~~L~L~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~ 767 (938)
+.+|+.|+++.+.... +.....+ ..+++|+.|.+..+. ++ +..+......+++|++|++++|
T Consensus 242 ~~~L~~l~l~~~~~is------d~~l~~l~~~c~~L~~L~l~~c~~lt----------~~gl~~i~~~~~~L~~L~l~~c 305 (482)
T KOG1947|consen 242 CRKLKSLDLSGCGLVT------DIGLSALASRCPNLETLSLSNCSNLT----------DEGLVSIAERCPSLRELDLSGC 305 (482)
T ss_pred cCCcCccchhhhhccC------chhHHHHHhhCCCcceEccCCCCccc----------hhHHHHHHHhcCcccEEeeecC
Confidence 4556666665444211 1111112 236677777755554 23 2445556666777888888877
Q ss_pred cCCCC--CCCchhccCCCCEEEEecCCCCCcCC-----CCCCCC--ccceeecccccCceEeCcccccCCCCCCCCCCCC
Q 002308 768 GGNTV--FPSWMASLTNLKSLDLCFCENCEQLP-----PLGKLP--SLEQLFISYMSSVKRVGDEFLGVESDRHDSSSSS 838 (938)
Q Consensus 768 ~~~~~--~p~~~~~l~~L~~L~L~~~~~~~~l~-----~l~~l~--~L~~L~L~~~~~l~~~~~~~~~~~~l~~~~~~~~ 838 (938)
..... +......+++|+.|.+..+..+..+. .+.... .+..+.+.+|+.++...-...+
T Consensus 306 ~~~~d~~l~~~~~~c~~l~~l~~~~~~~c~~l~~~~l~~~~~~~~d~~~~~~~~~~~~l~~~~l~~~~------------ 373 (482)
T KOG1947|consen 306 HGLTDSGLEALLKNCPNLRELKLLSLNGCPSLTDLSLSGLLTLTSDDLAELILRSCPKLTDLSLSYCG------------ 373 (482)
T ss_pred ccchHHHHHHHHHhCcchhhhhhhhcCCCccHHHHHHHHhhccCchhHhHHHHhcCCCcchhhhhhhh------------
Confidence 65431 22233356666665555443211110 011111 3333444444333322111110
Q ss_pred cccccCCccc-eeecccccccc-ccccccccccccccccccccceecccccccccCCCCC-CC-CCCCcCEEEEecCcch
Q 002308 839 SVIIAFPKLK-SLSIFEMEELE-EWDYGITRTGNTFINIMPRLSSLTINYCSKLKALPDH-IH-QTTTLKELRIGECDLL 914 (938)
Q Consensus 839 ~~~~~~~~L~-~L~l~~~~~L~-~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~-l~-~l~~L~~L~l~~c~~l 914 (938)
-.... .+.+.+|+.|+ .+... .....+|+.|+++.|...+.---. .. .+.++..+++.+|+.+
T Consensus 374 -----~~~~~~~~~l~gc~~l~~~l~~~--------~~~~~~l~~L~l~~~~~~t~~~l~~~~~~~~~~~~l~~~~~~~~ 440 (482)
T KOG1947|consen 374 -----ISDLGLELSLRGCPNLTESLELR--------LCRSDSLRVLNLSDCRLVTDKGLRCLADSCSNLKDLDLSGCRVI 440 (482)
T ss_pred -----ccCcchHHHhcCCcccchHHHHH--------hccCCccceEecccCccccccchHHHhhhhhccccCCccCcccc
Confidence 00111 23344454442 11111 113344889999988765532111 11 1677888888888887
Q ss_pred HHHh
Q 002308 915 EERY 918 (938)
Q Consensus 915 ~~~~ 918 (938)
....
T Consensus 441 ~~~~ 444 (482)
T KOG1947|consen 441 TLKS 444 (482)
T ss_pred cchh
Confidence 6543
No 285
>PLN03187 meiotic recombination protein DMC1 homolog; Provisional
Probab=96.15 E-value=0.021 Score=60.89 Aligned_cols=59 Identities=24% Similarity=0.228 Sum_probs=43.4
Q ss_pred CCeEEEEEEccCCChHHHHHHHHhhhhhhh----cccCeEEEEEeCCCCCHHHHHHHHHHHhcC
Q 002308 175 KGLHIISIVGMGGIGKTTLAQLACNHVEVK----REFDKTLWVCVSETFDEFRIAKAMLEALTG 234 (938)
Q Consensus 175 ~~~~vv~i~G~~GiGKTtLa~~v~~~~~~~----~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~ 234 (938)
+...++-|+|++|+|||+|+..++-..... +.-..++|++....|+.+++.+ +++.++.
T Consensus 124 ~~G~ItEI~G~~GsGKTql~lqlav~~qlp~~~gg~~~~vvyIdTE~tF~peRl~~-ia~~~g~ 186 (344)
T PLN03187 124 ETRCITEAFGEFRSGKTQLAHTLCVTTQLPTEMGGGNGKVAYIDTEGTFRPDRIVP-IAERFGM 186 (344)
T ss_pred CCCeEEEEecCCCCChhHHHHHHHHHHhcchhhCCCCceEEEEEcCCCCCHHHHHH-HHHHcCC
Confidence 356888999999999999999887532221 1125789999999999888654 5566553
No 286
>PRK06696 uridine kinase; Validated
Probab=96.13 E-value=0.0071 Score=61.19 Aligned_cols=43 Identities=23% Similarity=0.192 Sum_probs=34.5
Q ss_pred chhhHHHHHHHHhccCcccCCCeEEEEEEccCCChHHHHHHHHhhh
Q 002308 155 RVGERNALLSMLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNH 200 (938)
Q Consensus 155 r~~~~~~l~~~l~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~v~~~ 200 (938)
|.+.+++|.+.+.... .....+|+|.|.+|+||||+|+.+...
T Consensus 3 ~~~~~~~la~~~~~~~---~~~~~iI~I~G~sgsGKSTlA~~L~~~ 45 (223)
T PRK06696 3 RKQLIKELAEHILTLN---LTRPLRVAIDGITASGKTTFADELAEE 45 (223)
T ss_pred HHHHHHHHHHHHHHhC---CCCceEEEEECCCCCCHHHHHHHHHHH
Confidence 5666777777776533 346789999999999999999999884
No 287
>PRK07132 DNA polymerase III subunit delta'; Validated
Probab=96.09 E-value=0.29 Score=51.35 Aligned_cols=134 Identities=7% Similarity=0.088 Sum_probs=80.1
Q ss_pred CeEEEEEEccCCChHHHHHHHHhhhhhh------h--cccCeEEEEEe-CCCCCHHHHHHHHHHHhcCCCCCCCcHHHHH
Q 002308 176 GLHIISIVGMGGIGKTTLAQLACNHVEV------K--REFDKTLWVCV-SETFDEFRIAKAMLEALTGSTSNLNALQSLL 246 (938)
Q Consensus 176 ~~~vv~i~G~~GiGKTtLa~~v~~~~~~------~--~~f~~~~wv~~-~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~ 246 (938)
-.+...++|..|+||+++|..+.+..-- . .|=+...++.. +....++++. ++.+.+...+
T Consensus 17 l~haYLf~G~eg~gk~~~a~~~a~~l~c~~~~~~~~~~~p~n~~~~d~~g~~i~vd~Ir-~l~~~~~~~~---------- 85 (299)
T PRK07132 17 ISHSFLLKSNYNEDIDEKILYFLNKFNNLQITNLNEQELPANIILFDIFDKDLSKSEFL-SAINKLYFSS---------- 85 (299)
T ss_pred CCeEEEEeCCCCCCHHHHHHHHHHHHcCcCCCCCCCCCCCcceEEeccCCCcCCHHHHH-HHHHHhccCC----------
Confidence 4567779999999999999998874200 1 11112223321 1112222221 2222221100
Q ss_pred HHHHHHhcCceEEEEEecCCCCCccChhHHHHhhhCCCCCcEEEEEcCC-hhhhhh-hcCCceEeCCCCChHHHHHHHHH
Q 002308 247 ISIDESIAGKRFLLVLDDVWDGDYIKWEPFYRCLKKGLHGSKILITTRK-ESIVSM-MRSTDIISIEELAEEECWVLFKR 324 (938)
Q Consensus 247 ~~l~~~l~~~~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtr~-~~v~~~-~~~~~~~~l~~L~~~~~~~lf~~ 324 (938)
.-.+++=++|+|++..........+...+..-.+++.+|++|.+ ..+... ......+++.++++++..+.+..
T Consensus 86 -----~~~~~~KvvII~~~e~m~~~a~NaLLK~LEEPp~~t~~il~~~~~~kll~TI~SRc~~~~f~~l~~~~l~~~l~~ 160 (299)
T PRK07132 86 -----FVQSQKKILIIKNIEKTSNSLLNALLKTIEEPPKDTYFLLTTKNINKVLPTIVSRCQVFNVKEPDQQKILAKLLS 160 (299)
T ss_pred -----cccCCceEEEEecccccCHHHHHHHHHHhhCCCCCeEEEEEeCChHhChHHHHhCeEEEECCCCCHHHHHHHHHH
Confidence 00146678889998776655667788888776677777765544 344433 34578999999999999887765
Q ss_pred h
Q 002308 325 L 325 (938)
Q Consensus 325 ~ 325 (938)
.
T Consensus 161 ~ 161 (299)
T PRK07132 161 K 161 (299)
T ss_pred c
Confidence 3
No 288
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.08 E-value=0.034 Score=53.61 Aligned_cols=119 Identities=18% Similarity=0.163 Sum_probs=61.8
Q ss_pred CeEEEEEEccCCChHHHHHHHHhhhhhhhcccCeEEEEEeCCC--CCHHHHHHHHHHHhcC--CCCC----------CCc
Q 002308 176 GLHIISIVGMGGIGKTTLAQLACNHVEVKREFDKTLWVCVSET--FDEFRIAKAMLEALTG--STSN----------LNA 241 (938)
Q Consensus 176 ~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~--~~~~~~~~~i~~~l~~--~~~~----------~~~ 241 (938)
...+++|.|+.|.|||||.+.++.-. ......+++.-... ..... ..+.++. +... .+.
T Consensus 27 ~G~~~~l~G~nGsGKstLl~~i~G~~---~~~~G~i~~~g~~~~~~~~~~----~~~~i~~~~~~~~~~~~t~~e~lLS~ 99 (171)
T cd03228 27 PGEKVAIVGPSGSGKSTLLKLLLRLY---DPTSGEILIDGVDLRDLDLES----LRKNIAYVPQDPFLFSGTIRENILSG 99 (171)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHcCC---CCCCCEEEECCEEhhhcCHHH----HHhhEEEEcCCchhccchHHHHhhCH
Confidence 34689999999999999999998742 12233333321110 01111 1111110 0000 111
Q ss_pred HHHHHHHHHHHhcCceEEEEEecCCC-CCccChhHHHHhhhCCCCCcEEEEEcCChhhhhh
Q 002308 242 LQSLLISIDESIAGKRFLLVLDDVWD-GDYIKWEPFYRCLKKGLHGSKILITTRKESIVSM 301 (938)
Q Consensus 242 ~~~~~~~l~~~l~~~~~LlVlDdv~~-~~~~~~~~l~~~l~~~~~gs~ilvTtr~~~v~~~ 301 (938)
.+...-.+.+.+-.++-++++|+-.. .|......+...+.....+..||++|.+.+....
T Consensus 100 G~~~rl~la~al~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~ 160 (171)
T cd03228 100 GQRQRIAIARALLRDPPILILDEATSALDPETEALILEALRALAKGKTVIVIAHRLSTIRD 160 (171)
T ss_pred HHHHHHHHHHHHhcCCCEEEEECCCcCCCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHHh
Confidence 22222334555666778999998643 2222334455555433335668888887765543
No 289
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional
Probab=96.07 E-value=0.025 Score=67.68 Aligned_cols=135 Identities=16% Similarity=0.169 Sum_probs=75.4
Q ss_pred CceecchhhHHHHHHHHhccCcccCCCeEEEEEEccCCChHHHHHHHHhhhhhhhcccCeEEEEEeCCCCCHHHHHHHHH
Q 002308 150 EEICGRVGERNALLSMLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNHVEVKREFDKTLWVCVSETFDEFRIAKAML 229 (938)
Q Consensus 150 ~~~vGr~~~~~~l~~~l~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 229 (938)
..++|+...+..+.+.+..-.. ....|.|.|..|+|||++|+.+++... + .-...+.+++..-. ...+-..+.
T Consensus 376 ~~liG~S~~~~~~~~~~~~~a~----~~~pVLI~GE~GTGK~~lA~~ih~~s~-r-~~~~~v~i~c~~~~-~~~~~~~lf 448 (686)
T PRK15429 376 GEIIGRSEAMYSVLKQVEMVAQ----SDSTVLILGETGTGKELIARAIHNLSG-R-NNRRMVKMNCAAMP-AGLLESDLF 448 (686)
T ss_pred cceeecCHHHHHHHHHHHHHhC----CCCCEEEECCCCcCHHHHHHHHHHhcC-C-CCCCeEEEecccCC-hhHhhhhhc
Confidence 4699999888888776664321 345789999999999999999987421 1 11234455555422 111111111
Q ss_pred HHhcCCCCCCCcHHHHHHHHHHHhcCceEEEEEecCCCCCccChhHHHHhhhCCC-----------CCcEEEEEcCCh
Q 002308 230 EALTGSTSNLNALQSLLISIDESIAGKRFLLVLDDVWDGDYIKWEPFYRCLKKGL-----------HGSKILITTRKE 296 (938)
Q Consensus 230 ~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~~~~~~~l~~~l~~~~-----------~gs~ilvTtr~~ 296 (938)
....+...... ......+. ....=.|+|||+..........+...+..+. .+.|||.||...
T Consensus 449 g~~~~~~~g~~--~~~~g~le---~a~~GtL~Ldei~~L~~~~Q~~L~~~l~~~~~~~~g~~~~~~~~~RiI~~t~~~ 521 (686)
T PRK15429 449 GHERGAFTGAS--AQRIGRFE---LADKSSLFLDEVGDMPLELQPKLLRVLQEQEFERLGSNKIIQTDVRLIAATNRD 521 (686)
T ss_pred Ccccccccccc--cchhhHHH---hcCCCeEEEechhhCCHHHHHHHHHHHHhCCEEeCCCCCcccceEEEEEeCCCC
Confidence 11111101100 01111121 1223468999998876666667777765431 345888888653
No 290
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.07 E-value=0.00075 Score=66.44 Aligned_cols=99 Identities=19% Similarity=0.177 Sum_probs=71.8
Q ss_pred cCceeEEeccCCCCCCCCchhhHHHHHhccCCCeeEEecCCCCCCcccCccccccCCCCeeeecCCccccccc--cccCC
Q 002308 537 AKRIRSLLIEWPEFGHSSLNGEILEELFRESTSLRALDFPSFYLPLEIPRNIEKLVHLRYLNLSDQKIKKLPE--TLCEL 614 (938)
Q Consensus 537 ~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~n~~~~~lp~~~~~l~~L~~L~L~~~~i~~lp~--~i~~l 614 (938)
+.+.+.|++.+|.+. +| .+..+|+.|+||.|+-|.+. .+ ..+..|++|+.|+|+.|.|..+.+ .+.+|
T Consensus 18 l~~vkKLNcwg~~L~------DI--sic~kMp~lEVLsLSvNkIs-sL-~pl~rCtrLkElYLRkN~I~sldEL~YLknl 87 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLD------DI--SICEKMPLLEVLSLSVNKIS-SL-APLQRCTRLKELYLRKNCIESLDELEYLKNL 87 (388)
T ss_pred HHHhhhhcccCCCcc------HH--HHHHhcccceeEEeeccccc-cc-hhHHHHHHHHHHHHHhcccccHHHHHHHhcC
Confidence 556777888887752 21 23678999999999999843 33 347889999999999999887654 57889
Q ss_pred CCccEEEcCCCCCcccccc-----cccccCccceee
Q 002308 615 YNLEKLDISGCSDLRELPK-----GIGKLINMKHLL 645 (938)
Q Consensus 615 ~~L~~L~l~~~~~l~~lp~-----~i~~l~~L~~L~ 645 (938)
++|++|.|..|.-.+.-+. .+.-|++|+.|+
T Consensus 88 psLr~LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 88 PSLRTLWLDENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred chhhhHhhccCCcccccchhHHHHHHHHcccchhcc
Confidence 9999999888875444333 244567777765
No 291
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=96.07 E-value=0.038 Score=53.70 Aligned_cols=119 Identities=15% Similarity=0.154 Sum_probs=62.0
Q ss_pred CeEEEEEEccCCChHHHHHHHHhhhhhhhcccCeEEEEEeCCCCCHHHHHHHHHHHhcC--C-------------CCCCC
Q 002308 176 GLHIISIVGMGGIGKTTLAQLACNHVEVKREFDKTLWVCVSETFDEFRIAKAMLEALTG--S-------------TSNLN 240 (938)
Q Consensus 176 ~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~--~-------------~~~~~ 240 (938)
...+++|.|+.|.|||||++.++.... .....+++.-. +.......+.+.++. + ....+
T Consensus 27 ~Ge~~~i~G~nGsGKStLl~~l~G~~~---~~~G~i~~~g~---~~~~~~~~~~~~i~~~~q~~~~~~~tv~~~i~~~LS 100 (178)
T cd03247 27 QGEKIALLGRSGSGKSTLLQLLTGDLK---PQQGEITLDGV---PVSDLEKALSSLISVLNQRPYLFDTTLRNNLGRRFS 100 (178)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccCC---CCCCEEEECCE---EHHHHHHHHHhhEEEEccCCeeecccHHHhhcccCC
Confidence 345899999999999999999987421 11233333211 111111111111110 0 11112
Q ss_pred cHHHHHHHHHHHhcCceEEEEEecCCCC-CccChhHHHHhhhCCCCCcEEEEEcCChhhhh
Q 002308 241 ALQSLLISIDESIAGKRFLLVLDDVWDG-DYIKWEPFYRCLKKGLHGSKILITTRKESIVS 300 (938)
Q Consensus 241 ~~~~~~~~l~~~l~~~~~LlVlDdv~~~-~~~~~~~l~~~l~~~~~gs~ilvTtr~~~v~~ 300 (938)
..+...-.+.+.+-.++=++++|+-... |....+.+...+.....+..||++|.+.....
T Consensus 101 ~G~~qrv~laral~~~p~~lllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~ 161 (178)
T cd03247 101 GGERQRLALARILLQDAPIVLLDEPTVGLDPITERQLLSLIFEVLKDKTLIWITHHLTGIE 161 (178)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHH
Confidence 2222333355566677788999987542 22233344444443234667888888876554
No 292
>KOG2035 consensus Replication factor C, subunit RFC3 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=96.07 E-value=0.054 Score=53.85 Aligned_cols=181 Identities=13% Similarity=0.122 Sum_probs=104.6
Q ss_pred eecchhhHHHHHHHHhccCcccCCCeEEEEEEccCCChHHHHHHHHhhhhh----hhcccCeEEEEEeCCC---------
Q 002308 152 ICGRVGERNALLSMLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNHVE----VKREFDKTLWVCVSET--------- 218 (938)
Q Consensus 152 ~vGr~~~~~~l~~~l~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~v~~~~~----~~~~f~~~~wv~~~~~--------- 218 (938)
+.++++....+..... ..+..-..++|+.|.||-|.+..+.+..- -+-.-+...|.+-+..
T Consensus 15 l~~~~e~~~~Lksl~~------~~d~PHll~yGPSGaGKKTrimclL~elYG~gveklki~~~t~~tpS~kklEistvsS 88 (351)
T KOG2035|consen 15 LIYHEELANLLKSLSS------TGDFPHLLVYGPSGAGKKTRIMCLLRELYGVGVEKLKIETRTFTTPSKKKLEISTVSS 88 (351)
T ss_pred cccHHHHHHHHHHhcc------cCCCCeEEEECCCCCCchhhHHHHHHHHhCCCchheeeeeEEEecCCCceEEEEEecc
Confidence 5566666666666554 23567789999999999999887777420 0112234445543321
Q ss_pred -C-----------CHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHhc-CceE-EEEEecCCCCCccChhHHHHhhhCCC
Q 002308 219 -F-----------DEFRIAKAMLEALTGSTSNLNALQSLLISIDESIA-GKRF-LLVLDDVWDGDYIKWEPFYRCLKKGL 284 (938)
Q Consensus 219 -~-----------~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~-~~~~-LlVlDdv~~~~~~~~~~l~~~l~~~~ 284 (938)
. .-+-+.++|+++......- ... .+.| ++|+-.++.-..+....+.+....-.
T Consensus 89 ~yHlEitPSDaG~~DRvViQellKevAQt~qi-------------e~~~qr~fKvvvi~ead~LT~dAQ~aLRRTMEkYs 155 (351)
T KOG2035|consen 89 NYHLEITPSDAGNYDRVVIQELLKEVAQTQQI-------------ETQGQRPFKVVVINEADELTRDAQHALRRTMEKYS 155 (351)
T ss_pred cceEEeChhhcCcccHHHHHHHHHHHHhhcch-------------hhccccceEEEEEechHhhhHHHHHHHHHHHHHHh
Confidence 1 1122334444443311100 011 2334 56666665544445555666666556
Q ss_pred CCcEEEEEcCCh--hhhhhhcCCceEeCCCCChHHHHHHHHHhhcCCCCCchhhHHHHHHHHHHHhcCCChhH
Q 002308 285 HGSKILITTRKE--SIVSMMRSTDIISIEELAEEECWVLFKRLAFFGRSTEECEKLEQIGQRIARKCKGLPLA 355 (938)
Q Consensus 285 ~gs~ilvTtr~~--~v~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pla 355 (938)
..+|+|+...+. -+...-...-.+.+...+++|....+...+-..+-..+ ++++.+|+++++|.-.-
T Consensus 156 ~~~RlIl~cns~SriIepIrSRCl~iRvpaps~eeI~~vl~~v~~kE~l~lp----~~~l~rIa~kS~~nLRr 224 (351)
T KOG2035|consen 156 SNCRLILVCNSTSRIIEPIRSRCLFIRVPAPSDEEITSVLSKVLKKEGLQLP----KELLKRIAEKSNRNLRR 224 (351)
T ss_pred cCceEEEEecCcccchhHHhhheeEEeCCCCCHHHHHHHHHHHHHHhcccCc----HHHHHHHHHHhcccHHH
Confidence 677887754432 12222233457899999999999999887754433221 56789999999986533
No 293
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=96.06 E-value=0.058 Score=59.85 Aligned_cols=88 Identities=13% Similarity=0.159 Sum_probs=47.9
Q ss_pred eEEEEEEccCCChHHHHHHHHhhhhhhhcccCeEEEEEeCCCCCH--HHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHhc
Q 002308 177 LHIISIVGMGGIGKTTLAQLACNHVEVKREFDKTLWVCVSETFDE--FRIAKAMLEALTGSTSNLNALQSLLISIDESIA 254 (938)
Q Consensus 177 ~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~--~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~ 254 (938)
.+++.++|++|+||||++..++........-..+..|+... +.. .+-+....+.++.+.....+.++....+.+ +.
T Consensus 221 ~~~i~~vGptGvGKTTt~~kLA~~~~~~~~g~~V~li~~D~-~r~~a~eqL~~~a~~~~vp~~~~~~~~~l~~~l~~-~~ 298 (424)
T PRK05703 221 GGVVALVGPTGVGKTTTLAKLAARYALLYGKKKVALITLDT-YRIGAVEQLKTYAKIMGIPVEVVYDPKELAKALEQ-LR 298 (424)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEECCc-cHHHHHHHHHHHHHHhCCceEccCCHHhHHHHHHH-hC
Confidence 46899999999999999998877432112223566666433 211 122233333343332222333444444443 23
Q ss_pred CceEEEEEecCCC
Q 002308 255 GKRFLLVLDDVWD 267 (938)
Q Consensus 255 ~~~~LlVlDdv~~ 267 (938)
..=+||+|..-.
T Consensus 299 -~~DlVlIDt~G~ 310 (424)
T PRK05703 299 -DCDVILIDTAGR 310 (424)
T ss_pred -CCCEEEEeCCCC
Confidence 345888997643
No 294
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=96.05 E-value=0.025 Score=56.81 Aligned_cols=125 Identities=20% Similarity=0.183 Sum_probs=71.8
Q ss_pred CeEEEEEEccCCChHHHHHHHHhhhhhhhcccCeEEEEEeCC-----CCCHHHHHHHHHHHhcCCC-------CCCCcHH
Q 002308 176 GLHIISIVGMGGIGKTTLAQLACNHVEVKREFDKTLWVCVSE-----TFDEFRIAKAMLEALTGST-------SNLNALQ 243 (938)
Q Consensus 176 ~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~-----~~~~~~~~~~i~~~l~~~~-------~~~~~~~ 243 (938)
...+++|+|..|.||||+++.+..- .... ...++..... .....+...++++.++... ......+
T Consensus 38 ~ge~~glVGESG~GKSTlgr~i~~L--~~pt-~G~i~f~g~~i~~~~~~~~~~~v~elL~~Vgl~~~~~~ryPhelSGGQ 114 (268)
T COG4608 38 EGETLGLVGESGCGKSTLGRLILGL--EEPT-SGEILFEGKDITKLSKEERRERVLELLEKVGLPEEFLYRYPHELSGGQ 114 (268)
T ss_pred CCCEEEEEecCCCCHHHHHHHHHcC--cCCC-CceEEEcCcchhhcchhHHHHHHHHHHHHhCCCHHHhhcCCcccCchh
Confidence 4468999999999999999999883 2222 3333333211 1223344556666655321 1222233
Q ss_pred HHHHHHHHHhcCceEEEEEecCCCC-CccChhHHHHhhhC--CCCCcEEEEEcCChhhhhhhc
Q 002308 244 SLLISIDESIAGKRFLLVLDDVWDG-DYIKWEPFYRCLKK--GLHGSKILITTRKESIVSMMR 303 (938)
Q Consensus 244 ~~~~~l~~~l~~~~~LlVlDdv~~~-~~~~~~~l~~~l~~--~~~gs~ilvTtr~~~v~~~~~ 303 (938)
.-.-.+.+.+.-++-++|.|..-+. +...-..+...+.. ...|-..+..|-+-.++..+.
T Consensus 115 rQRi~IARALal~P~liV~DEpvSaLDvSiqaqIlnLL~dlq~~~~lt~lFIsHDL~vv~~is 177 (268)
T COG4608 115 RQRIGIARALALNPKLIVADEPVSALDVSVQAQILNLLKDLQEELGLTYLFISHDLSVVRYIS 177 (268)
T ss_pred hhhHHHHHHHhhCCcEEEecCchhhcchhHHHHHHHHHHHHHHHhCCeEEEEEEEHHhhhhhc
Confidence 3334467788889999999986442 21122334444433 234556777777776666643
No 295
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=96.04 E-value=0.025 Score=52.63 Aligned_cols=21 Identities=38% Similarity=0.553 Sum_probs=19.3
Q ss_pred EEEEEccCCChHHHHHHHHhh
Q 002308 179 IISIVGMGGIGKTTLAQLACN 199 (938)
Q Consensus 179 vv~i~G~~GiGKTtLa~~v~~ 199 (938)
+|.+.|++|+||||+|+.+..
T Consensus 1 lii~~G~pgsGKSt~a~~l~~ 21 (143)
T PF13671_consen 1 LIILCGPPGSGKSTLAKRLAK 21 (143)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 588999999999999999876
No 296
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=96.03 E-value=0.038 Score=56.46 Aligned_cols=87 Identities=23% Similarity=0.170 Sum_probs=53.8
Q ss_pred CCeEEEEEEccCCChHHHHHHHHhhhhhhhcccCeEEEEEeCCCCCHHHHHHHHHHHhcCCC------------------
Q 002308 175 KGLHIISIVGMGGIGKTTLAQLACNHVEVKREFDKTLWVCVSETFDEFRIAKAMLEALTGST------------------ 236 (938)
Q Consensus 175 ~~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~------------------ 236 (938)
+...++.|+|.+|+|||++|.++.... .+ .=..++|++..+. ..++.+++. +++...
T Consensus 23 ~~g~~~~i~G~~GsGKt~l~~~~~~~~-~~-~g~~~~y~~~e~~--~~~~~~~~~-~~g~~~~~~~~~g~l~i~~~~~~~ 97 (234)
T PRK06067 23 PFPSLILIEGDHGTGKSVLSQQFVYGA-LK-QGKKVYVITTENT--SKSYLKQME-SVKIDISDFFLWGYLRIFPLNTEG 97 (234)
T ss_pred cCCcEEEEECCCCCChHHHHHHHHHHH-Hh-CCCEEEEEEcCCC--HHHHHHHHH-HCCCChhHHHhCCCceEEeccccc
Confidence 356899999999999999999987632 22 2246888887653 455555432 222110
Q ss_pred --CCCCcHHHHHHHHHHHhcC-ceEEEEEecCC
Q 002308 237 --SNLNALQSLLISIDESIAG-KRFLLVLDDVW 266 (938)
Q Consensus 237 --~~~~~~~~~~~~l~~~l~~-~~~LlVlDdv~ 266 (938)
......+.....+...+.. +.-++|+|.+.
T Consensus 98 ~~~~~~~~~~ll~~l~~~i~~~~~~~iviDs~t 130 (234)
T PRK06067 98 FEWNSTLANKLLELIIEFIKSKREDVIIIDSLT 130 (234)
T ss_pred cccCcchHHHHHHHHHHHHHhcCCCEEEEecHH
Confidence 0012234555556555553 55589999975
No 297
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=96.02 E-value=0.045 Score=50.87 Aligned_cols=106 Identities=18% Similarity=0.211 Sum_probs=59.0
Q ss_pred CeEEEEEEccCCChHHHHHHHHhhhhhhhcccCeEEEEEeCCCCCHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHhcC
Q 002308 176 GLHIISIVGMGGIGKTTLAQLACNHVEVKREFDKTLWVCVSETFDEFRIAKAMLEALTGSTSNLNALQSLLISIDESIAG 255 (938)
Q Consensus 176 ~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~ 255 (938)
...+++|.|..|.|||||++.++.... .....+|+.-.. .+.-. .+.+..+...-.+.+.+-.
T Consensus 25 ~Ge~~~i~G~nGsGKStLl~~l~G~~~---~~~G~i~~~~~~-------------~i~~~-~~lS~G~~~rv~laral~~ 87 (144)
T cd03221 25 PGDRIGLVGRNGAGKSTLLKLIAGELE---PDEGIVTWGSTV-------------KIGYF-EQLSGGEKMRLALAKLLLE 87 (144)
T ss_pred CCCEEEEECCCCCCHHHHHHHHcCCCC---CCceEEEECCeE-------------EEEEE-ccCCHHHHHHHHHHHHHhc
Confidence 346899999999999999999987421 223333332100 00000 0022223333345555666
Q ss_pred ceEEEEEecCCC-CCccChhHHHHhhhCCCCCcEEEEEcCChhhhh
Q 002308 256 KRFLLVLDDVWD-GDYIKWEPFYRCLKKGLHGSKILITTRKESIVS 300 (938)
Q Consensus 256 ~~~LlVlDdv~~-~~~~~~~~l~~~l~~~~~gs~ilvTtr~~~v~~ 300 (938)
++-++++|+-.. .|......+...+... +..||++|.+.+...
T Consensus 88 ~p~illlDEP~~~LD~~~~~~l~~~l~~~--~~til~~th~~~~~~ 131 (144)
T cd03221 88 NPNLLLLDEPTNHLDLESIEALEEALKEY--PGTVILVSHDRYFLD 131 (144)
T ss_pred CCCEEEEeCCccCCCHHHHHHHHHHHHHc--CCEEEEEECCHHHHH
Confidence 777899998743 2333344455555443 245888887765443
No 298
>PHA02244 ATPase-like protein
Probab=95.98 E-value=0.034 Score=59.03 Aligned_cols=22 Identities=23% Similarity=0.339 Sum_probs=19.9
Q ss_pred EEEEEccCCChHHHHHHHHhhh
Q 002308 179 IISIVGMGGIGKTTLAQLACNH 200 (938)
Q Consensus 179 vv~i~G~~GiGKTtLa~~v~~~ 200 (938)
.|.|+|++|+|||++|++++..
T Consensus 121 PVLL~GppGtGKTtLA~aLA~~ 142 (383)
T PHA02244 121 PVFLKGGAGSGKNHIAEQIAEA 142 (383)
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 4788999999999999999884
No 299
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=95.98 E-value=0.082 Score=58.50 Aligned_cols=131 Identities=18% Similarity=0.247 Sum_probs=76.7
Q ss_pred eEEEEEEccCCChHHHHHHHHhhhhhhhcccCeEEEEEeCCCCCHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHhcCc
Q 002308 177 LHIISIVGMGGIGKTTLAQLACNHVEVKREFDKTLWVCVSETFDEFRIAKAMLEALTGSTSNLNALQSLLISIDESIAGK 256 (938)
Q Consensus 177 ~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~ 256 (938)
+.=|.+||++|.|||-||++|++ +.+..| ++|..+ +++...-+ .....+.+..++.-...
T Consensus 545 PsGvLL~GPPGCGKTLlAKAVAN--Eag~NF-----isVKGP--------ELlNkYVG-----ESErAVR~vFqRAR~sa 604 (802)
T KOG0733|consen 545 PSGVLLCGPPGCGKTLLAKAVAN--EAGANF-----ISVKGP--------ELLNKYVG-----ESERAVRQVFQRARASA 604 (802)
T ss_pred CCceEEeCCCCccHHHHHHHHhh--hccCce-----EeecCH--------HHHHHHhh-----hHHHHHHHHHHHhhcCC
Confidence 44578999999999999999999 444454 444442 12221111 11122333333333467
Q ss_pred eEEEEEecCCCC-----CccC------hhHHHHhhhC--CCCCcEEEEEcCChhhhhh-h----cCCceEeCCCCChHHH
Q 002308 257 RFLLVLDDVWDG-----DYIK------WEPFYRCLKK--GLHGSKILITTRKESIVSM-M----RSTDIISIEELAEEEC 318 (938)
Q Consensus 257 ~~LlVlDdv~~~-----~~~~------~~~l~~~l~~--~~~gs~ilvTtr~~~v~~~-~----~~~~~~~l~~L~~~~~ 318 (938)
+++|+||.++.. +... ..+++.-+.. ...|.-||-.|..+++... + .-...+-++.=+.+|-
T Consensus 605 PCVIFFDEiDaL~p~R~~~~s~~s~RvvNqLLtElDGl~~R~gV~viaATNRPDiIDpAiLRPGRlDk~LyV~lPn~~eR 684 (802)
T KOG0733|consen 605 PCVIFFDEIDALVPRRSDEGSSVSSRVVNQLLTELDGLEERRGVYVIAATNRPDIIDPAILRPGRLDKLLYVGLPNAEER 684 (802)
T ss_pred CeEEEecchhhcCcccCCCCchhHHHHHHHHHHHhcccccccceEEEeecCCCcccchhhcCCCccCceeeecCCCHHHH
Confidence 999999998431 1111 2333333333 2456667766666554333 1 1245677777788999
Q ss_pred HHHHHHhhc
Q 002308 319 WVLFKRLAF 327 (938)
Q Consensus 319 ~~lf~~~~~ 327 (938)
.+++.....
T Consensus 685 ~~ILK~~tk 693 (802)
T KOG0733|consen 685 VAILKTITK 693 (802)
T ss_pred HHHHHHHhc
Confidence 999988764
No 300
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.96 E-value=0.073 Score=57.86 Aligned_cols=104 Identities=13% Similarity=0.127 Sum_probs=58.6
Q ss_pred CeEEEEEEccCCChHHHHHHHHhhhhhhhc--ccCeEEEEEeCCCCCHH--HHHHHHHHHhcCCCCCCCcHHHHHHHHHH
Q 002308 176 GLHIISIVGMGGIGKTTLAQLACNHVEVKR--EFDKTLWVCVSETFDEF--RIAKAMLEALTGSTSNLNALQSLLISIDE 251 (938)
Q Consensus 176 ~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~--~f~~~~wv~~~~~~~~~--~~~~~i~~~l~~~~~~~~~~~~~~~~l~~ 251 (938)
..++|.++|+.|+||||.+..++....... +=..+..+++. .+... .-++..++.++.+.......+++...+.+
T Consensus 173 ~~~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~D-t~R~aa~eQL~~~a~~lgvpv~~~~~~~~l~~~L~~ 251 (388)
T PRK12723 173 KKRVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITID-NYRIGAKKQIQTYGDIMGIPVKAIESFKDLKEEITQ 251 (388)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEecc-CccHHHHHHHHHHhhcCCcceEeeCcHHHHHHHHHH
Confidence 457999999999999999999887533221 11234455543 33322 23555555555443333344455444444
Q ss_pred HhcCceEEEEEecCCCCCcc--ChhHHHHhhhC
Q 002308 252 SIAGKRFLLVLDDVWDGDYI--KWEPFYRCLKK 282 (938)
Q Consensus 252 ~l~~~~~LlVlDdv~~~~~~--~~~~l~~~l~~ 282 (938)
. .+.-+|++|-....... ....+...+..
T Consensus 252 ~--~~~DlVLIDTaGr~~~~~~~l~el~~~l~~ 282 (388)
T PRK12723 252 S--KDFDLVLVDTIGKSPKDFMKLAEMKELLNA 282 (388)
T ss_pred h--CCCCEEEEcCCCCCccCHHHHHHHHHHHHh
Confidence 3 34568999988553211 23445555554
No 301
>TIGR02239 recomb_RAD51 DNA repair protein RAD51. This eukaryotic sequence family consists of RAD51, a protein involved in DNA homologous recombination and repair. It is similar in sequence the exclusively meiotic recombinase DMC1 (TIGR02238), to archaeal families RadA (TIGR02236) and RadB (TIGR02237), and to bacterial RecA (TIGR02012).
Probab=95.94 E-value=0.033 Score=59.15 Aligned_cols=58 Identities=24% Similarity=0.194 Sum_probs=41.1
Q ss_pred CCeEEEEEEccCCChHHHHHHHHhhhhhhhc----ccCeEEEEEeCCCCCHHHHHHHHHHHhc
Q 002308 175 KGLHIISIVGMGGIGKTTLAQLACNHVEVKR----EFDKTLWVCVSETFDEFRIAKAMLEALT 233 (938)
Q Consensus 175 ~~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~----~f~~~~wv~~~~~~~~~~~~~~i~~~l~ 233 (938)
....++.|+|.+|+|||+|+..++....... .-..++|++....++..+ +.++++.++
T Consensus 94 ~~g~i~~i~G~~g~GKT~l~~~~~~~~~~~~~~Gg~~~~vvyIdtE~~f~~~R-l~~ia~~~~ 155 (316)
T TIGR02239 94 ETGSITEIFGEFRTGKTQLCHTLAVTCQLPIDQGGGEGKALYIDTEGTFRPER-LLAIAERYG 155 (316)
T ss_pred CCCeEEEEECCCCCCcCHHHHHHHHHHhhhhhcCCCCceEEEEECCCCCCHHH-HHHHHHHcC
Confidence 4578999999999999999998876322211 123679999888888776 344555544
No 302
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=95.93 E-value=0.062 Score=51.42 Aligned_cols=117 Identities=15% Similarity=0.129 Sum_probs=62.7
Q ss_pred CeEEEEEEccCCChHHHHHHHHhhhhhh-hcc--cC---eEEEEEeCCCCCH--HHHHHHHHHHhcCCCCCCCcHHHHHH
Q 002308 176 GLHIISIVGMGGIGKTTLAQLACNHVEV-KRE--FD---KTLWVCVSETFDE--FRIAKAMLEALTGSTSNLNALQSLLI 247 (938)
Q Consensus 176 ~~~vv~i~G~~GiGKTtLa~~v~~~~~~-~~~--f~---~~~wv~~~~~~~~--~~~~~~i~~~l~~~~~~~~~~~~~~~ 247 (938)
...+++|.|+.|.|||||++.++..... .+. ++ .+.++ .+.... ..+.+.+.-. .....+..+...-
T Consensus 26 ~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~~~i~~~--~q~~~~~~~tv~~nl~~~---~~~~LS~G~~~rv 100 (166)
T cd03223 26 PGDRLLITGPSGTGKSSLFRALAGLWPWGSGRIGMPEGEDLLFL--PQRPYLPLGTLREQLIYP---WDDVLSGGEQQRL 100 (166)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCCceEEEE--CCCCccccccHHHHhhcc---CCCCCCHHHHHHH
Confidence 3468999999999999999999874221 111 11 12222 222211 1233333210 1223333444444
Q ss_pred HHHHHhcCceEEEEEecCCC-CCccChhHHHHhhhCCCCCcEEEEEcCChhhh
Q 002308 248 SIDESIAGKRFLLVLDDVWD-GDYIKWEPFYRCLKKGLHGSKILITTRKESIV 299 (938)
Q Consensus 248 ~l~~~l~~~~~LlVlDdv~~-~~~~~~~~l~~~l~~~~~gs~ilvTtr~~~v~ 299 (938)
.+.+.+-.++=++++|+--. .|......+...+... +..||++|.+....
T Consensus 101 ~laral~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~--~~tiiivsh~~~~~ 151 (166)
T cd03223 101 AFARLLLHKPKFVFLDEATSALDEESEDRLYQLLKEL--GITVISVGHRPSLW 151 (166)
T ss_pred HHHHHHHcCCCEEEEECCccccCHHHHHHHHHHHHHh--CCEEEEEeCChhHH
Confidence 45666667777889998643 2222333444444433 35588888776554
No 303
>TIGR00708 cobA cob(I)alamin adenosyltransferase. Alternate name: corrinoid adenosyltransferase.
Probab=95.92 E-value=0.07 Score=50.43 Aligned_cols=119 Identities=18% Similarity=0.081 Sum_probs=65.6
Q ss_pred eEEEEEEccCCChHHHHHHHHhhhhhhhcccCeE--EEEEeCCCCCHHHHHHHHHHHh---cCC----CCCC-Cc---HH
Q 002308 177 LHIISIVGMGGIGKTTLAQLACNHVEVKREFDKT--LWVCVSETFDEFRIAKAMLEAL---TGS----TSNL-NA---LQ 243 (938)
Q Consensus 177 ~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~--~wv~~~~~~~~~~~~~~i~~~l---~~~----~~~~-~~---~~ 243 (938)
...|-|++..|.||||.|...+... ....+... =|+-..........+..+.-.+ +.. ..+. .+ ..
T Consensus 5 ~Gli~v~~g~GkGKtt~a~g~a~ra-~~~g~~v~ivQFlKg~~~~GE~~~l~~~~~~~~~~g~g~~~~~~~~~~~~~~~~ 83 (173)
T TIGR00708 5 RGIIIVHTGNGKGKTTAAFGMALRA-LGHGKKVGVIQFIKGAWPNGERAAFEPHGVEFQVMGTGFTWETQNREADTAIAK 83 (173)
T ss_pred ccEEEEECCCCCChHHHHHHHHHHH-HHCCCeEEEEEEecCCcccChHHHHHhcCcEEEECCCCCeecCCCcHHHHHHHH
Confidence 4678888889999999998887742 22233221 1333222234444444320000 010 0010 01 11
Q ss_pred HHHHHHHHHhcCce-EEEEEecCCC---CCccChhHHHHhhhCCCCCcEEEEEcCCh
Q 002308 244 SLLISIDESIAGKR-FLLVLDDVWD---GDYIKWEPFYRCLKKGLHGSKILITTRKE 296 (938)
Q Consensus 244 ~~~~~l~~~l~~~~-~LlVlDdv~~---~~~~~~~~l~~~l~~~~~gs~ilvTtr~~ 296 (938)
+.....++.+...+ =++|||.+-. ......+.+...+....++..||+|-|+.
T Consensus 84 ~~~~~a~~~l~~~~~DlvVLDEi~~A~~~gli~~~~v~~lL~~rp~~~evVlTGR~~ 140 (173)
T TIGR00708 84 AAWQHAKEMLADPELDLVLLDELTYALKYGYLDVEEVVEALQERPGHQHVIITGRGC 140 (173)
T ss_pred HHHHHHHHHHhcCCCCEEEehhhHHHHHCCCcCHHHHHHHHHhCCCCCEEEEECCCC
Confidence 22233344444444 4999999842 22345667888887777788999999986
No 304
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=95.92 E-value=0.042 Score=61.48 Aligned_cols=134 Identities=17% Similarity=0.138 Sum_probs=67.8
Q ss_pred CCeEEEEEEccCCChHHHHHHHHhhhhhhhcccCeEEEEEeCCCCCHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHhc
Q 002308 175 KGLHIISIVGMGGIGKTTLAQLACNHVEVKREFDKTLWVCVSETFDEFRIAKAMLEALTGSTSNLNALQSLLISIDESIA 254 (938)
Q Consensus 175 ~~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~ 254 (938)
...+-|.+||++|.|||++|+++++ ..+..| +.+..+ ++....-+. ....+....++.=+
T Consensus 466 ~ppkGVLlyGPPGC~KT~lAkalAn--e~~~nF-----lsvkgp--------EL~sk~vGe-----SEr~ir~iF~kAR~ 525 (693)
T KOG0730|consen 466 SPPKGVLLYGPPGCGKTLLAKALAN--EAGMNF-----LSVKGP--------ELFSKYVGE-----SERAIREVFRKARQ 525 (693)
T ss_pred CCCceEEEECCCCcchHHHHHHHhh--hhcCCe-----eeccCH--------HHHHHhcCc-----hHHHHHHHHHHHhh
Confidence 4567889999999999999999999 344444 333321 111111111 11112222222223
Q ss_pred CceEEEEEecCCCCC-------cc----ChhHHHHhhhCCCCC-cEEEE--EcCChhhhhhh-c---CCceEeCCCCChH
Q 002308 255 GKRFLLVLDDVWDGD-------YI----KWEPFYRCLKKGLHG-SKILI--TTRKESIVSMM-R---STDIISIEELAEE 316 (938)
Q Consensus 255 ~~~~LlVlDdv~~~~-------~~----~~~~l~~~l~~~~~g-s~ilv--Ttr~~~v~~~~-~---~~~~~~l~~L~~~ 316 (938)
-.+.++.||.++... .. ....++.-+...... .-+|| |-|...+...+ . -+..+.++.=+.+
T Consensus 526 ~aP~IiFfDEiDsi~~~R~g~~~~v~~RVlsqLLtEmDG~e~~k~V~ViAATNRpd~ID~ALlRPGRlD~iiyVplPD~~ 605 (693)
T KOG0730|consen 526 VAPCIIFFDEIDALAGSRGGSSSGVTDRVLSQLLTEMDGLEALKNVLVIAATNRPDMIDPALLRPGRLDRIIYVPLPDLE 605 (693)
T ss_pred cCCeEEehhhHHhHhhccCCCccchHHHHHHHHHHHcccccccCcEEEEeccCChhhcCHHHcCCcccceeEeecCccHH
Confidence 456888888874311 00 112222222222222 22333 33333333332 2 2456777666777
Q ss_pred HHHHHHHHhhcC
Q 002308 317 ECWVLFKRLAFF 328 (938)
Q Consensus 317 ~~~~lf~~~~~~ 328 (938)
...++|..++..
T Consensus 606 aR~~Ilk~~~kk 617 (693)
T KOG0730|consen 606 ARLEILKQCAKK 617 (693)
T ss_pred HHHHHHHHHHhc
Confidence 778899988753
No 305
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=95.91 E-value=0.042 Score=52.79 Aligned_cols=115 Identities=14% Similarity=0.196 Sum_probs=61.5
Q ss_pred CeEEEEEEccCCChHHHHHHHHhhhh---hhhc---ccC--eEEEEEeCCCCCHHHHHHHHHHHhcCCCC-------CCC
Q 002308 176 GLHIISIVGMGGIGKTTLAQLACNHV---EVKR---EFD--KTLWVCVSETFDEFRIAKAMLEALTGSTS-------NLN 240 (938)
Q Consensus 176 ~~~vv~i~G~~GiGKTtLa~~v~~~~---~~~~---~f~--~~~wv~~~~~~~~~~~~~~i~~~l~~~~~-------~~~ 240 (938)
...+++|.|+.|+|||||.+.+..+. ++.. .|. .+.|+ .+ .+.++.++.... ..+
T Consensus 20 ~G~~~~l~G~nG~GKSTLl~~il~~~G~v~~~~~~~~~~~~~~~~~--~q--------~~~l~~~~L~~~~~~~~~~~LS 89 (176)
T cd03238 20 LNVLVVVTGVSGSGKSTLVNEGLYASGKARLISFLPKFSRNKLIFI--DQ--------LQFLIDVGLGYLTLGQKLSTLS 89 (176)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhhcCCcEEECCcccccccccEEEE--hH--------HHHHHHcCCCccccCCCcCcCC
Confidence 34689999999999999999886421 1111 110 12232 11 345555553211 112
Q ss_pred cHHHHHHHHHHHhcCc--eEEEEEecCCC-CCccChhHHHHhhhCC-CCCcEEEEEcCChhhhh
Q 002308 241 ALQSLLISIDESIAGK--RFLLVLDDVWD-GDYIKWEPFYRCLKKG-LHGSKILITTRKESIVS 300 (938)
Q Consensus 241 ~~~~~~~~l~~~l~~~--~~LlVlDdv~~-~~~~~~~~l~~~l~~~-~~gs~ilvTtr~~~v~~ 300 (938)
......-.+.+.+-.+ +-++++|+--. .+......+...+... ..|..||++|.+.+...
T Consensus 90 gGq~qrl~laral~~~~~p~llLlDEPt~~LD~~~~~~l~~~l~~~~~~g~tvIivSH~~~~~~ 153 (176)
T cd03238 90 GGELQRVKLASELFSEPPGTLFILDEPSTGLHQQDINQLLEVIKGLIDLGNTVILIEHNLDVLS 153 (176)
T ss_pred HHHHHHHHHHHHHhhCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHH
Confidence 2222233344555556 67888898643 2223334444444432 24667888888876553
No 306
>PRK14974 cell division protein FtsY; Provisional
Probab=95.91 E-value=0.12 Score=55.14 Aligned_cols=89 Identities=19% Similarity=0.207 Sum_probs=48.1
Q ss_pred CeEEEEEEccCCChHHHHHHHHhhhhhhhcccCeEEEEEeCCCCC--HHHHHHHHHHHhcCCCCC---CCcHHH-HHHHH
Q 002308 176 GLHIISIVGMGGIGKTTLAQLACNHVEVKREFDKTLWVCVSETFD--EFRIAKAMLEALTGSTSN---LNALQS-LLISI 249 (938)
Q Consensus 176 ~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~--~~~~~~~i~~~l~~~~~~---~~~~~~-~~~~l 249 (938)
...+|.++|++|+||||++..++.... ...+ .++.+. ...+. ...-++..+..++.+... ..+... ....+
T Consensus 139 ~~~vi~~~G~~GvGKTTtiakLA~~l~-~~g~-~V~li~-~Dt~R~~a~eqL~~~a~~lgv~v~~~~~g~dp~~v~~~ai 215 (336)
T PRK14974 139 KPVVIVFVGVNGTGKTTTIAKLAYYLK-KNGF-SVVIAA-GDTFRAGAIEQLEEHAERLGVKVIKHKYGADPAAVAYDAI 215 (336)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHH-HcCC-eEEEec-CCcCcHHHHHHHHHHHHHcCCceecccCCCCHHHHHHHHH
Confidence 468999999999999999988887432 2223 233343 22222 223345556666533211 112112 22333
Q ss_pred HHHh-cCceEEEEEecCCCC
Q 002308 250 DESI-AGKRFLLVLDDVWDG 268 (938)
Q Consensus 250 ~~~l-~~~~~LlVlDdv~~~ 268 (938)
.... .+.. +|++|-....
T Consensus 216 ~~~~~~~~D-vVLIDTaGr~ 234 (336)
T PRK14974 216 EHAKARGID-VVLIDTAGRM 234 (336)
T ss_pred HHHHhCCCC-EEEEECCCcc
Confidence 3322 2333 8999988553
No 307
>PRK13695 putative NTPase; Provisional
Probab=95.88 E-value=0.017 Score=55.85 Aligned_cols=22 Identities=41% Similarity=0.493 Sum_probs=19.8
Q ss_pred EEEEEccCCChHHHHHHHHhhh
Q 002308 179 IISIVGMGGIGKTTLAQLACNH 200 (938)
Q Consensus 179 vv~i~G~~GiGKTtLa~~v~~~ 200 (938)
.++|.|.+|+|||||++.++..
T Consensus 2 ~i~ltG~~G~GKTTll~~i~~~ 23 (174)
T PRK13695 2 KIGITGPPGVGKTTLVLKIAEL 23 (174)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 3789999999999999998875
No 308
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=95.87 E-value=0.01 Score=53.97 Aligned_cols=24 Identities=38% Similarity=0.418 Sum_probs=21.5
Q ss_pred eEEEEEEccCCChHHHHHHHHhhh
Q 002308 177 LHIISIVGMGGIGKTTLAQLACNH 200 (938)
Q Consensus 177 ~~vv~i~G~~GiGKTtLa~~v~~~ 200 (938)
.-.|+|.|++|+||||+++.+.+.
T Consensus 5 ~mki~ITG~PGvGKtTl~~ki~e~ 28 (179)
T COG1618 5 AMKIFITGRPGVGKTTLVLKIAEK 28 (179)
T ss_pred ceEEEEeCCCCccHHHHHHHHHHH
Confidence 346899999999999999999984
No 309
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.86 E-value=0.0042 Score=36.26 Aligned_cols=19 Identities=32% Similarity=0.761 Sum_probs=10.5
Q ss_pred CCeeeecCCcccccccccc
Q 002308 594 LRYLNLSDQKIKKLPETLC 612 (938)
Q Consensus 594 L~~L~L~~~~i~~lp~~i~ 612 (938)
|++|+|++|.++.+|.+|+
T Consensus 2 L~~Ldls~n~l~~ip~~~~ 20 (22)
T PF00560_consen 2 LEYLDLSGNNLTSIPSSFS 20 (22)
T ss_dssp ESEEEETSSEESEEGTTTT
T ss_pred ccEEECCCCcCEeCChhhc
Confidence 5555555555555555444
No 310
>PRK04301 radA DNA repair and recombination protein RadA; Validated
Probab=95.85 E-value=0.04 Score=59.05 Aligned_cols=58 Identities=29% Similarity=0.358 Sum_probs=41.8
Q ss_pred CCeEEEEEEccCCChHHHHHHHHhhhhhhhcc----cCeEEEEEeCCCCCHHHHHHHHHHHhc
Q 002308 175 KGLHIISIVGMGGIGKTTLAQLACNHVEVKRE----FDKTLWVCVSETFDEFRIAKAMLEALT 233 (938)
Q Consensus 175 ~~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~----f~~~~wv~~~~~~~~~~~~~~i~~~l~ 233 (938)
+...++-|+|++|+|||+++.+++........ =..++|++..+.++.+.+.+ +++.++
T Consensus 100 ~~g~vtei~G~~GsGKT~l~~~~~~~~~~~~~~gg~~~~~~yi~te~~f~~~rl~~-~~~~~g 161 (317)
T PRK04301 100 ETQSITEFYGEFGSGKTQICHQLAVNVQLPEEKGGLEGKAVYIDTEGTFRPERIEQ-MAEALG 161 (317)
T ss_pred cCCcEEEEECCCCCCHhHHHHHHHHHhccccccCCCCceEEEEeCCCCcCHHHHHH-HHHHcC
Confidence 35688999999999999999999874322111 14799999999888877544 444443
No 311
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=95.84 E-value=0.072 Score=53.94 Aligned_cols=49 Identities=20% Similarity=0.217 Sum_probs=32.8
Q ss_pred CeEEEEEEccCCChHHHHHHHHhhhhhhhcccCeEEEEEeCCCCCHHHHHHHH
Q 002308 176 GLHIISIVGMGGIGKTTLAQLACNHVEVKREFDKTLWVCVSETFDEFRIAKAM 228 (938)
Q Consensus 176 ~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i 228 (938)
...++.|.|++|+||||+|.+++... .+.. ..++|++.. .+..++.+.+
T Consensus 23 ~g~~~~i~G~~G~GKTtl~~~~~~~~-~~~g-~~~~yi~~e--~~~~~~~~~~ 71 (230)
T PRK08533 23 AGSLILIEGDESTGKSILSQRLAYGF-LQNG-YSVSYVSTQ--LTTTEFIKQM 71 (230)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHH-HhCC-CcEEEEeCC--CCHHHHHHHH
Confidence 34699999999999999987766632 2222 345666633 3456666665
No 312
>COG0468 RecA RecA/RadA recombinase [DNA replication, recombination, and repair]
Probab=95.84 E-value=0.043 Score=56.38 Aligned_cols=90 Identities=26% Similarity=0.175 Sum_probs=56.6
Q ss_pred CCCeEEEEEEccCCChHHHHHHHHhhhhhhhcccCeEEEEEeCCCCCHHHHHHHHHHH-hcCC-CCCCCcHHHHH---HH
Q 002308 174 QKGLHIISIVGMGGIGKTTLAQLACNHVEVKREFDKTLWVCVSETFDEFRIAKAMLEA-LTGS-TSNLNALQSLL---IS 248 (938)
Q Consensus 174 ~~~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~-l~~~-~~~~~~~~~~~---~~ 248 (938)
-+..+++=|+|+.|+||||+|.+++-. .+..-..++|++..+.++++.+. +++.. +..- .....+.++.. ..
T Consensus 57 l~~g~ItEiyG~~gsGKT~lal~~~~~--aq~~g~~a~fIDtE~~l~p~r~~-~l~~~~~d~l~v~~~~~~e~q~~i~~~ 133 (279)
T COG0468 57 LPRGRITEIYGPESSGKTTLALQLVAN--AQKPGGKAAFIDTEHALDPERAK-QLGVDLLDNLLVSQPDTGEQQLEIAEK 133 (279)
T ss_pred cccceEEEEecCCCcchhhHHHHHHHH--hhcCCCeEEEEeCCCCCCHHHHH-HHHHhhhcceeEecCCCHHHHHHHHHH
Confidence 346789999999999999999998774 33444589999999999887754 33333 2211 11122233322 22
Q ss_pred HHHHhcCceEEEEEecCC
Q 002308 249 IDESIAGKRFLLVLDDVW 266 (938)
Q Consensus 249 l~~~l~~~~~LlVlDdv~ 266 (938)
+.+....+--|+|+|.+-
T Consensus 134 ~~~~~~~~i~LvVVDSva 151 (279)
T COG0468 134 LARSGAEKIDLLVVDSVA 151 (279)
T ss_pred HHHhccCCCCEEEEecCc
Confidence 333323335689999883
No 313
>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional
Probab=95.83 E-value=0.044 Score=62.99 Aligned_cols=134 Identities=16% Similarity=0.183 Sum_probs=77.7
Q ss_pred CCceecchhhHHHHHHHHhccCcccCCCeEEEEEEccCCChHHHHHHHHhhhhhhhcccCeEEEEEeCCCCCHHHHHHHH
Q 002308 149 EEEICGRVGERNALLSMLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNHVEVKREFDKTLWVCVSETFDEFRIAKAM 228 (938)
Q Consensus 149 ~~~~vGr~~~~~~l~~~l~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i 228 (938)
...++|+...+.++.+.+..-.. ....|.|+|..|+|||++|+.+.+... ..-...+.|++..-.+ ..+
T Consensus 186 ~~~iig~s~~~~~~~~~i~~~a~----~~~pVlI~Ge~GtGK~~~A~~ih~~s~--r~~~p~v~v~c~~~~~--~~~--- 254 (509)
T PRK05022 186 EGEMIGQSPAMQQLKKEIEVVAA----SDLNVLILGETGVGKELVARAIHAASP--RADKPLVYLNCAALPE--SLA--- 254 (509)
T ss_pred CCceeecCHHHHHHHHHHHHHhC----CCCcEEEECCCCccHHHHHHHHHHhCC--cCCCCeEEEEcccCCh--HHH---
Confidence 46799999999888888876432 455789999999999999999988421 1112345566655332 221
Q ss_pred HHHhcCCCCCC-CcH-HHHHHHHHHHhcCceEEEEEecCCCCCccChhHHHHhhhCCC-----------CCcEEEEEcCC
Q 002308 229 LEALTGSTSNL-NAL-QSLLISIDESIAGKRFLLVLDDVWDGDYIKWEPFYRCLKKGL-----------HGSKILITTRK 295 (938)
Q Consensus 229 ~~~l~~~~~~~-~~~-~~~~~~l~~~l~~~~~LlVlDdv~~~~~~~~~~l~~~l~~~~-----------~gs~ilvTtr~ 295 (938)
-..+.+..... ... ......+. ..+. =-|+||++..........+...+..+. ...|||.||..
T Consensus 255 e~~lfG~~~g~~~ga~~~~~g~~~--~a~g-GtL~ldeI~~L~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiI~~t~~ 331 (509)
T PRK05022 255 ESELFGHVKGAFTGAISNRSGKFE--LADG-GTLFLDEIGELPLALQAKLLRVLQYGEIQRVGSDRSLRVDVRVIAATNR 331 (509)
T ss_pred HHHhcCccccccCCCcccCCcchh--hcCC-CEEEecChhhCCHHHHHHHHHHHhcCCEeeCCCCcceecceEEEEecCC
Confidence 12222211100 000 00000111 1122 246899998876666677777775432 24588888864
Q ss_pred h
Q 002308 296 E 296 (938)
Q Consensus 296 ~ 296 (938)
.
T Consensus 332 ~ 332 (509)
T PRK05022 332 D 332 (509)
T ss_pred C
Confidence 3
No 314
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=95.82 E-value=0.099 Score=51.68 Aligned_cols=128 Identities=20% Similarity=0.233 Sum_probs=73.5
Q ss_pred CeEEEEEEccCCChHHHHHHHHhhhhhh-------------------hccc--CeEEEEE----eCCCC-----------
Q 002308 176 GLHIISIVGMGGIGKTTLAQLACNHVEV-------------------KREF--DKTLWVC----VSETF----------- 219 (938)
Q Consensus 176 ~~~vv~i~G~~GiGKTtLa~~v~~~~~~-------------------~~~f--~~~~wv~----~~~~~----------- 219 (938)
....|+|+|+.|+|||||...+.--.+. ...| ..+-||. .-...
T Consensus 30 ~Ge~vaI~GpSGSGKSTLLniig~ld~pt~G~v~i~g~d~~~l~~~~~~~~R~~~iGfvFQ~~nLl~~ltv~ENv~lpl~ 109 (226)
T COG1136 30 AGEFVAIVGPSGSGKSTLLNLLGGLDKPTSGEVLINGKDLTKLSEKELAKLRRKKIGFVFQNFNLLPDLTVLENVELPLL 109 (226)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcccCCCCceEEECCEEcCcCCHHHHHHHHHHhEEEECccCCCCCCCCHHHHHHhHHH
Confidence 3458999999999999999877642110 0111 1122221 00000
Q ss_pred -------CHHHHHHHHHHHhcCC-------CCCCCcHHHHHHHHHHHhcCceEEEEEecCC-CCCccChhHHHHhhhCC-
Q 002308 220 -------DEFRIAKAMLEALTGS-------TSNLNALQSLLISIDESIAGKRFLLVLDDVW-DGDYIKWEPFYRCLKKG- 283 (938)
Q Consensus 220 -------~~~~~~~~i~~~l~~~-------~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~-~~~~~~~~~l~~~l~~~- 283 (938)
...+....+++.++.. +...+..++-.-.+.+.+-..+-+|+-|+=- ..|...-+.+...+...
T Consensus 110 ~~~~~~~~~~~~~~~l~~~lgl~~~~~~~~p~eLSGGqqQRVAIARAL~~~P~iilADEPTgnLD~~t~~~V~~ll~~~~ 189 (226)
T COG1136 110 IAGKSAGRRKRAAEELLEVLGLEDRLLKKKPSELSGGQQQRVAIARALINNPKIILADEPTGNLDSKTAKEVLELLRELN 189 (226)
T ss_pred HcCCChhHHHHHHHHHHHhcCChhhhccCCchhcCHHHHHHHHHHHHHhcCCCeEEeeCccccCChHHHHHHHHHHHHHH
Confidence 1233445555554432 2233444555566778888888899999742 22222334455555442
Q ss_pred -CCCcEEEEEcCChhhhhhhc
Q 002308 284 -LHGSKILITTRKESIVSMMR 303 (938)
Q Consensus 284 -~~gs~ilvTtr~~~v~~~~~ 303 (938)
..|..||+.|-++.++..+.
T Consensus 190 ~~~g~tii~VTHd~~lA~~~d 210 (226)
T COG1136 190 KERGKTIIMVTHDPELAKYAD 210 (226)
T ss_pred HhcCCEEEEEcCCHHHHHhCC
Confidence 35778999999999988654
No 315
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.81 E-value=0.047 Score=60.80 Aligned_cols=90 Identities=17% Similarity=0.138 Sum_probs=47.1
Q ss_pred CeEEEEEEccCCChHHHHHHHHhhhhhhhcccCeEEEEEeCC-CCCHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHhc
Q 002308 176 GLHIISIVGMGGIGKTTLAQLACNHVEVKREFDKTLWVCVSE-TFDEFRIAKAMLEALTGSTSNLNALQSLLISIDESIA 254 (938)
Q Consensus 176 ~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~-~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~ 254 (938)
...+++|+|++|+||||++..++.....+.....+..++... .......++...+.++.......+..++...+++ +.
T Consensus 349 ~G~vIaLVGPtGvGKTTtaakLAa~la~~~~gkkVaLIdtDtyRigA~EQLk~ya~iLgv~v~~a~d~~~L~~aL~~-l~ 427 (559)
T PRK12727 349 RGGVIALVGPTGAGKTTTIAKLAQRFAAQHAPRDVALVTTDTQRVGGREQLHSYGRQLGIAVHEADSAESLLDLLER-LR 427 (559)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHHhcCCCceEEEecccccccHHHHHHHhhcccCceeEecCcHHHHHHHHHH-hc
Confidence 457999999999999999998887422222123455554322 1111222233333333222222333344444433 33
Q ss_pred CceEEEEEecCCC
Q 002308 255 GKRFLLVLDDVWD 267 (938)
Q Consensus 255 ~~~~LlVlDdv~~ 267 (938)
+ .=+|++|..-.
T Consensus 428 ~-~DLVLIDTaG~ 439 (559)
T PRK12727 428 D-YKLVLIDTAGM 439 (559)
T ss_pred c-CCEEEecCCCc
Confidence 3 44888898743
No 316
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=95.81 E-value=0.08 Score=54.27 Aligned_cols=22 Identities=27% Similarity=0.465 Sum_probs=19.5
Q ss_pred EEEEEccCCChHHHHHHHHhhh
Q 002308 179 IISIVGMGGIGKTTLAQLACNH 200 (938)
Q Consensus 179 vv~i~G~~GiGKTtLa~~v~~~ 200 (938)
+..|+|++|+|||+||..++..
T Consensus 3 ~~ll~g~~G~GKS~lal~la~~ 24 (239)
T cd01125 3 VSALVAPGGTGKSSLLLVLALA 24 (239)
T ss_pred eeEEEcCCCCCHHHHHHHHHHH
Confidence 5678999999999999998874
No 317
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=95.80 E-value=0.041 Score=59.18 Aligned_cols=91 Identities=12% Similarity=0.169 Sum_probs=51.4
Q ss_pred CeEEEEEEccCCChHHHHHHHHhhhhhhhcccCeEEEEEeCC-CCCHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHhc
Q 002308 176 GLHIISIVGMGGIGKTTLAQLACNHVEVKREFDKTLWVCVSE-TFDEFRIAKAMLEALTGSTSNLNALQSLLISIDESIA 254 (938)
Q Consensus 176 ~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~-~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~ 254 (938)
...+++++|+.|+||||++.+++.....+.....+.++.... .....+-++...+.++.+.....+..+....+. .+.
T Consensus 136 ~g~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~lit~D~~R~ga~EqL~~~a~~~gv~~~~~~~~~~l~~~l~-~l~ 214 (374)
T PRK14722 136 RGGVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYRIGGHEQLRIFGKILGVPVHAVKDGGDLQLALA-ELR 214 (374)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecccccccHHHHHHHHHHHcCCceEecCCcccHHHHHH-Hhc
Confidence 357999999999999999999988432222223455555332 123344455555555543322222233333333 344
Q ss_pred CceEEEEEecCCCC
Q 002308 255 GKRFLLVLDDVWDG 268 (938)
Q Consensus 255 ~~~~LlVlDdv~~~ 268 (938)
++ -++++|..-..
T Consensus 215 ~~-DlVLIDTaG~~ 227 (374)
T PRK14722 215 NK-HMVLIDTIGMS 227 (374)
T ss_pred CC-CEEEEcCCCCC
Confidence 44 45669988543
No 318
>PRK05439 pantothenate kinase; Provisional
Probab=95.77 E-value=0.061 Score=56.36 Aligned_cols=80 Identities=24% Similarity=0.221 Sum_probs=44.3
Q ss_pred CCCeEEEEEEccCCChHHHHHHHHhhhhhhhcc--cCeEEEEEeCCCCCHHHHHHHHHHHhc--CCCCCCCcHHHHHHHH
Q 002308 174 QKGLHIISIVGMGGIGKTTLAQLACNHVEVKRE--FDKTLWVCVSETFDEFRIAKAMLEALT--GSTSNLNALQSLLISI 249 (938)
Q Consensus 174 ~~~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~--f~~~~wv~~~~~~~~~~~~~~i~~~l~--~~~~~~~~~~~~~~~l 249 (938)
.....+|+|.|.+|+||||+|+.+... .... -..+.-++...-.-..+.+.. ..+. ...++.-+.+.+...+
T Consensus 83 ~~~~~iIgIaG~~gsGKSTla~~L~~~--l~~~~~~~~v~vi~~DdFy~~~~~l~~--~~l~~~kg~Pes~D~~~l~~~L 158 (311)
T PRK05439 83 QKVPFIIGIAGSVAVGKSTTARLLQAL--LSRWPEHPKVELVTTDGFLYPNAVLEE--RGLMKRKGFPESYDMRALLRFL 158 (311)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHH--HHhhCCCCceEEEeccccccCHHHHhh--hhccccCCCcccccHHHHHHHH
Confidence 456789999999999999999988773 3221 123444444332222222211 0111 1123344566666666
Q ss_pred HHHhcCce
Q 002308 250 DESIAGKR 257 (938)
Q Consensus 250 ~~~l~~~~ 257 (938)
.....++.
T Consensus 159 ~~Lk~G~~ 166 (311)
T PRK05439 159 SDVKSGKP 166 (311)
T ss_pred HHHHcCCC
Confidence 66666654
No 319
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=95.70 E-value=0.13 Score=54.01 Aligned_cols=54 Identities=19% Similarity=0.167 Sum_probs=37.6
Q ss_pred CeEEEEEEccCCChHHHHHHHHhhhhhhhcccCeEEEEEeCCCCCHHHHHHHHHHHh
Q 002308 176 GLHIISIVGMGGIGKTTLAQLACNHVEVKREFDKTLWVCVSETFDEFRIAKAMLEAL 232 (938)
Q Consensus 176 ~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l 232 (938)
...++.|.|.+|+||||++.+++.... ..+=..++|++... +..++...+...+
T Consensus 29 ~g~~~~i~g~~G~GKT~l~~~~~~~~~-~~~g~~vl~iS~E~--~~~~~~~r~~~~~ 82 (271)
T cd01122 29 KGELIILTAGTGVGKTTFLREYALDLI-TQHGVRVGTISLEE--PVVRTARRLLGQY 82 (271)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHH-HhcCceEEEEEccc--CHHHHHHHHHHHH
Confidence 345889999999999999999887432 22124677887665 4556666665554
No 320
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=95.66 E-value=0.037 Score=52.78 Aligned_cols=117 Identities=15% Similarity=0.194 Sum_probs=63.7
Q ss_pred CeEEEEEEccCCChHHHHHHHHhhhhhhhcccCeEEEEEeCC--CCCHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHh
Q 002308 176 GLHIISIVGMGGIGKTTLAQLACNHVEVKREFDKTLWVCVSE--TFDEFRIAKAMLEALTGSTSNLNALQSLLISIDESI 253 (938)
Q Consensus 176 ~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~--~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l 253 (938)
...+++|.|+.|.|||||.+.++... ......+++.-.. ..+..+.. .+.++.. .+.+..+...-.+.+.+
T Consensus 25 ~Ge~~~l~G~nGsGKSTLl~~i~G~~---~~~~G~v~~~g~~~~~~~~~~~~---~~~i~~~-~qLS~G~~qrl~laral 97 (163)
T cd03216 25 RGEVHALLGENGAGKSTLMKILSGLY---KPDSGEILVDGKEVSFASPRDAR---RAGIAMV-YQLSVGERQMVEIARAL 97 (163)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC---CCCCeEEEECCEECCcCCHHHHH---hcCeEEE-EecCHHHHHHHHHHHHH
Confidence 34689999999999999999998732 2334445543211 11111111 1111110 11233333344455666
Q ss_pred cCceEEEEEecCCC-CCccChhHHHHhhhCC-CCCcEEEEEcCChhhh
Q 002308 254 AGKRFLLVLDDVWD-GDYIKWEPFYRCLKKG-LHGSKILITTRKESIV 299 (938)
Q Consensus 254 ~~~~~LlVlDdv~~-~~~~~~~~l~~~l~~~-~~gs~ilvTtr~~~v~ 299 (938)
-.++-++++|+-.. .|......+...+... ..|..||++|.+....
T Consensus 98 ~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~ 145 (163)
T cd03216 98 ARNARLLILDEPTAALTPAEVERLFKVIRRLRAQGVAVIFISHRLDEV 145 (163)
T ss_pred hcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHH
Confidence 67778889998743 2333344455555432 2466688888876543
No 321
>PLN03186 DNA repair protein RAD51 homolog; Provisional
Probab=95.66 E-value=0.052 Score=58.03 Aligned_cols=59 Identities=22% Similarity=0.249 Sum_probs=42.9
Q ss_pred CCeEEEEEEccCCChHHHHHHHHhhhhhhh---c-ccCeEEEEEeCCCCCHHHHHHHHHHHhcC
Q 002308 175 KGLHIISIVGMGGIGKTTLAQLACNHVEVK---R-EFDKTLWVCVSETFDEFRIAKAMLEALTG 234 (938)
Q Consensus 175 ~~~~vv~i~G~~GiGKTtLa~~v~~~~~~~---~-~f~~~~wv~~~~~~~~~~~~~~i~~~l~~ 234 (938)
....++-|+|.+|+|||+++..++-..... + .-..++|++....++.+++ .+|++.++.
T Consensus 121 ~~g~i~~i~G~~g~GKT~l~~~l~~~~~~~~~~gg~~g~vlyIdtE~~f~~eRl-~qia~~~~~ 183 (342)
T PLN03186 121 ETGSITEIYGEFRTGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDTEGTFRPQRL-IQIAERFGL 183 (342)
T ss_pred cCceEEEEECCCCCCccHHHHHHHHHhhcchhhCCCCceEEEEECCCCccHHHH-HHHHHHcCC
Confidence 356789999999999999998877532221 1 1136999999999988775 455666543
No 322
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=95.66 E-value=0.0049 Score=60.85 Aligned_cols=65 Identities=25% Similarity=0.180 Sum_probs=44.2
Q ss_pred hhCCCCCCCCeEEEeee--cCCCCCCCchhccCCCCEEEEecCCCC--CcCCCCCCCCccceeeccccc
Q 002308 751 EALQPPLNLKELEIHYY--GGNTVFPSWMASLTNLKSLDLCFCENC--EQLPPLGKLPSLEQLFISYMS 815 (938)
Q Consensus 751 ~~l~~~~~L~~L~l~~~--~~~~~~p~~~~~l~~L~~L~L~~~~~~--~~l~~l~~l~~L~~L~L~~~~ 815 (938)
..+..+++|+.|.++.| .++..++.....+|+|++|+|++|++. +.++++..+++|..|++.+|+
T Consensus 59 ~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~~Ldl~n~~ 127 (260)
T KOG2739|consen 59 TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENLKSLDLFNCS 127 (260)
T ss_pred ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcchhhhhcccCC
Confidence 34555677888888777 444434444446688888888888654 345557777888888888776
No 323
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=95.62 E-value=0.084 Score=58.42 Aligned_cols=89 Identities=18% Similarity=0.137 Sum_probs=48.2
Q ss_pred CeEEEEEEccCCChHHHHHHHHhhhhhhhcccCeEEEEEeCC-CCCHHHHHHHHHHHhcCCCCC---CCcHHHHHHHHHH
Q 002308 176 GLHIISIVGMGGIGKTTLAQLACNHVEVKREFDKTLWVCVSE-TFDEFRIAKAMLEALTGSTSN---LNALQSLLISIDE 251 (938)
Q Consensus 176 ~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~-~~~~~~~~~~i~~~l~~~~~~---~~~~~~~~~~l~~ 251 (938)
.+.+|.++|.+|+||||.|..++.... +..+ .+..|++.. .....+.++.++.+++.+... ..+.........+
T Consensus 94 ~p~vI~lvG~~GsGKTTtaakLA~~L~-~~g~-kV~lV~~D~~R~aa~eQL~~la~~~gvp~~~~~~~~d~~~i~~~al~ 171 (437)
T PRK00771 94 KPQTIMLVGLQGSGKTTTAAKLARYFK-KKGL-KVGLVAADTYRPAAYDQLKQLAEKIGVPFYGDPDNKDAVEIAKEGLE 171 (437)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHH-HcCC-eEEEecCCCCCHHHHHHHHHHHHHcCCcEEecCCccCHHHHHHHHHH
Confidence 467999999999999999999988533 2223 344444322 112234455666665533211 1222222222222
Q ss_pred HhcCceEEEEEecCCC
Q 002308 252 SIAGKRFLLVLDDVWD 267 (938)
Q Consensus 252 ~l~~~~~LlVlDdv~~ 267 (938)
...+. -+||+|-.-.
T Consensus 172 ~~~~~-DvVIIDTAGr 186 (437)
T PRK00771 172 KFKKA-DVIIVDTAGR 186 (437)
T ss_pred HhhcC-CEEEEECCCc
Confidence 23333 5688887743
No 324
>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]
Probab=95.62 E-value=0.027 Score=54.88 Aligned_cols=78 Identities=19% Similarity=0.248 Sum_probs=42.4
Q ss_pred CeEEEEEEccCCChHHHHHHHHhhhhhhhcccCeEEEEEeCCCCC-HHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHhc
Q 002308 176 GLHIISIVGMGGIGKTTLAQLACNHVEVKREFDKTLWVCVSETFD-EFRIAKAMLEALTGSTSNLNALQSLLISIDESIA 254 (938)
Q Consensus 176 ~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~-~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~ 254 (938)
.+.+|+|.|.+|+||||+|+.++. .++.+. ++-++-..-.. .+..-.+--.......+..-+++-....|...++
T Consensus 7 ~~iiIgIaG~SgSGKTTva~~l~~--~~~~~~--~~~I~~D~YYk~~~~~~~~~~~~~n~d~p~A~D~dLl~~~L~~L~~ 82 (218)
T COG0572 7 KVIIIGIAGGSGSGKTTVAKELSE--QLGVEK--VVVISLDDYYKDQSHLPFEERNKINYDHPEAFDLDLLIEHLKDLKQ 82 (218)
T ss_pred ceEEEEEeCCCCCCHHHHHHHHHH--HhCcCc--ceEeeccccccchhhcCHhhcCCcCccChhhhcHHHHHHHHHHHHc
Confidence 568999999999999999999988 344332 22222111110 0000000000011123344566777777777777
Q ss_pred Cce
Q 002308 255 GKR 257 (938)
Q Consensus 255 ~~~ 257 (938)
+++
T Consensus 83 g~~ 85 (218)
T COG0572 83 GKP 85 (218)
T ss_pred CCc
Confidence 776
No 325
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=95.60 E-value=0.073 Score=51.23 Aligned_cols=104 Identities=15% Similarity=0.144 Sum_probs=57.7
Q ss_pred CeEEEEEEccCCChHHHHHHHHhhhhhhhcccCeEEEEE------eCCCCCHHHHHHHHHHHhcCCCCCCCcHHHHHHHH
Q 002308 176 GLHIISIVGMGGIGKTTLAQLACNHVEVKREFDKTLWVC------VSETFDEFRIAKAMLEALTGSTSNLNALQSLLISI 249 (938)
Q Consensus 176 ~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~------~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l 249 (938)
...+++|.|+.|+|||||++.+..-.. .....+++. +.+... .+..+...-.+
T Consensus 24 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~~---p~~G~i~~~g~~i~~~~q~~~------------------LSgGq~qrv~l 82 (177)
T cd03222 24 EGEVIGIVGPNGTGKTTAVKILAGQLI---PNGDNDEWDGITPVYKPQYID------------------LSGGELQRVAI 82 (177)
T ss_pred CCCEEEEECCCCChHHHHHHHHHcCCC---CCCcEEEECCEEEEEEcccCC------------------CCHHHHHHHHH
Confidence 346899999999999999999887321 122222221 111111 22233333445
Q ss_pred HHHhcCceEEEEEecCCCC-CccChhHHHHhhhCC-CC-CcEEEEEcCChhhhh
Q 002308 250 DESIAGKRFLLVLDDVWDG-DYIKWEPFYRCLKKG-LH-GSKILITTRKESIVS 300 (938)
Q Consensus 250 ~~~l~~~~~LlVlDdv~~~-~~~~~~~l~~~l~~~-~~-gs~ilvTtr~~~v~~ 300 (938)
.+.+-.++-++++|+--.. +......+...+... .. +..||++|.+.....
T Consensus 83 aral~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~ 136 (177)
T cd03222 83 AAALLRNATFYLFDEPSAYLDIEQRLNAARAIRRLSEEGKKTALVVEHDLAVLD 136 (177)
T ss_pred HHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEECCHHHHH
Confidence 5566667789999986432 222233344444331 12 255777777765444
No 326
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=95.58 E-value=0.066 Score=55.70 Aligned_cols=25 Identities=40% Similarity=0.392 Sum_probs=22.1
Q ss_pred CCeEEEEEEccCCChHHHHHHHHhh
Q 002308 175 KGLHIISIVGMGGIGKTTLAQLACN 199 (938)
Q Consensus 175 ~~~~vv~i~G~~GiGKTtLa~~v~~ 199 (938)
..+.+|+|.|..|+||||+|+.+..
T Consensus 60 ~~p~IIGIaG~~GSGKSTlar~L~~ 84 (290)
T TIGR00554 60 KIPYIISIAGSVAVGKSTTARILQA 84 (290)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 4678999999999999999987765
No 327
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=95.56 E-value=0.1 Score=50.38 Aligned_cols=22 Identities=41% Similarity=0.561 Sum_probs=20.0
Q ss_pred EEEEEccCCChHHHHHHHHhhh
Q 002308 179 IISIVGMGGIGKTTLAQLACNH 200 (938)
Q Consensus 179 vv~i~G~~GiGKTtLa~~v~~~ 200 (938)
++.+.|++|+||||++..++..
T Consensus 2 ~~~~~G~~G~GKTt~~~~la~~ 23 (173)
T cd03115 2 VILLVGLQGVGKTTTAAKLALY 23 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6889999999999999998874
No 328
>PRK08233 hypothetical protein; Provisional
Probab=95.54 E-value=0.037 Score=54.06 Aligned_cols=24 Identities=38% Similarity=0.508 Sum_probs=21.7
Q ss_pred eEEEEEEccCCChHHHHHHHHhhh
Q 002308 177 LHIISIVGMGGIGKTTLAQLACNH 200 (938)
Q Consensus 177 ~~vv~i~G~~GiGKTtLa~~v~~~ 200 (938)
..+|+|.|.+|+||||+|..++..
T Consensus 3 ~~iI~I~G~~GsGKtTla~~L~~~ 26 (182)
T PRK08233 3 TKIITIAAVSGGGKTTLTERLTHK 26 (182)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhh
Confidence 478999999999999999998874
No 329
>PRK13531 regulatory ATPase RavA; Provisional
Probab=95.53 E-value=0.016 Score=63.79 Aligned_cols=152 Identities=13% Similarity=0.211 Sum_probs=83.2
Q ss_pred CceecchhhHHHHHHHHhccCcccCCCeEEEEEEccCCChHHHHHHHHhhhhhhhcccCeEEEEEeCCCCCHHHHHHHH-
Q 002308 150 EEICGRVGERNALLSMLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNHVEVKREFDKTLWVCVSETFDEFRIAKAM- 228 (938)
Q Consensus 150 ~~~vGr~~~~~~l~~~l~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i- 228 (938)
..++||++.++.+...+..+. -|.|.|++|+|||++|+.+.........|.. +.+.-. ...+++..+
T Consensus 20 ~~i~gre~vI~lll~aalag~--------hVLL~GpPGTGKT~LAraLa~~~~~~~~F~~---~~~~ft-tp~DLfG~l~ 87 (498)
T PRK13531 20 KGLYERSHAIRLCLLAALSGE--------SVFLLGPPGIAKSLIARRLKFAFQNARAFEY---LMTRFS-TPEEVFGPLS 87 (498)
T ss_pred hhccCcHHHHHHHHHHHccCC--------CEEEECCCChhHHHHHHHHHHHhcccCccee---eeeeec-CcHHhcCcHH
Confidence 358999999999999887543 5899999999999999999884222222321 111100 112222211
Q ss_pred HHHhcCCCCCCCcHHHHHHHHHHHhcC---ceEEEEEecCCCCCccChhHHHHhhhCCC--C-------CcEEEEEcCCh
Q 002308 229 LEALTGSTSNLNALQSLLISIDESIAG---KRFLLVLDDVWDGDYIKWEPFYRCLKKGL--H-------GSKILITTRKE 296 (938)
Q Consensus 229 ~~~l~~~~~~~~~~~~~~~~l~~~l~~---~~~LlVlDdv~~~~~~~~~~l~~~l~~~~--~-------gs~ilvTtr~~ 296 (938)
+..... .. ...+...| .--++++|+++.........+...+.... . ..++++++.++
T Consensus 88 i~~~~~----~g-------~f~r~~~G~L~~A~lLfLDEI~rasp~~QsaLLeam~Er~~t~g~~~~~lp~rfiv~ATN~ 156 (498)
T PRK13531 88 IQALKD----EG-------RYQRLTSGYLPEAEIVFLDEIWKAGPAILNTLLTAINERRFRNGAHEEKIPMRLLVTASNE 156 (498)
T ss_pred Hhhhhh----cC-------chhhhcCCccccccEEeecccccCCHHHHHHHHHHHHhCeEecCCeEEeCCCcEEEEECCC
Confidence 111100 00 00011111 11289999999877666666777764321 1 23455555443
Q ss_pred hhhh-------hhc-CCceEeCCCCCh-HHHHHHHHHh
Q 002308 297 SIVS-------MMR-STDIISIEELAE-EECWVLFKRL 325 (938)
Q Consensus 297 ~v~~-------~~~-~~~~~~l~~L~~-~~~~~lf~~~ 325 (938)
+.. .+. -.-.+.++++++ ++-.+++...
T Consensus 157 -LPE~g~~leAL~DRFliri~vp~l~~~~~e~~lL~~~ 193 (498)
T PRK13531 157 -LPEADSSLEALYDRMLIRLWLDKVQDKANFRSMLTSQ 193 (498)
T ss_pred -CcccCCchHHhHhhEEEEEECCCCCchHHHHHHHHcc
Confidence 221 111 123678899975 4447777653
No 330
>PTZ00035 Rad51 protein; Provisional
Probab=95.53 E-value=0.062 Score=57.62 Aligned_cols=58 Identities=22% Similarity=0.256 Sum_probs=40.6
Q ss_pred CCeEEEEEEccCCChHHHHHHHHhhhhhhh----cccCeEEEEEeCCCCCHHHHHHHHHHHhc
Q 002308 175 KGLHIISIVGMGGIGKTTLAQLACNHVEVK----REFDKTLWVCVSETFDEFRIAKAMLEALT 233 (938)
Q Consensus 175 ~~~~vv~i~G~~GiGKTtLa~~v~~~~~~~----~~f~~~~wv~~~~~~~~~~~~~~i~~~l~ 233 (938)
+...++.|+|.+|+|||+|+..++-..... ..=..++|++....++.++ +.++++.++
T Consensus 116 ~~G~iteI~G~~GsGKT~l~~~l~~~~qlp~~~gg~~g~vvyIdtE~~f~~er-i~~ia~~~g 177 (337)
T PTZ00035 116 ETGSITELFGEFRTGKTQLCHTLCVTCQLPIEQGGGEGKVLYIDTEGTFRPER-IVQIAERFG 177 (337)
T ss_pred CCCeEEEEECCCCCchhHHHHHHHHHhccccccCCCCceEEEEEccCCCCHHH-HHHHHHHhC
Confidence 456899999999999999999887543211 1123577999888777776 344455544
No 331
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=95.53 E-value=0.052 Score=53.31 Aligned_cols=45 Identities=24% Similarity=0.218 Sum_probs=30.7
Q ss_pred EEEEEccCCChHHHHHHHHhhhhhhhcccCeEEEEEeCCCCCHHHHHHH
Q 002308 179 IISIVGMGGIGKTTLAQLACNHVEVKREFDKTLWVCVSETFDEFRIAKA 227 (938)
Q Consensus 179 vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~ 227 (938)
++.|.|++|+|||++|.+++...- +.. ..++|++... +.+++.+.
T Consensus 1 ~~li~G~~G~GKT~l~~~~~~~~~-~~g-~~v~~~s~e~--~~~~~~~~ 45 (187)
T cd01124 1 STLLSGGPGTGKTTFALQFLYAGL-ARG-EPGLYVTLEE--SPEELIEN 45 (187)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHH-HCC-CcEEEEECCC--CHHHHHHH
Confidence 368999999999999999877422 222 4577887654 34444444
No 332
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=95.52 E-value=0.038 Score=55.20 Aligned_cols=121 Identities=14% Similarity=0.172 Sum_probs=59.0
Q ss_pred eEEEEEEccCCChHHHHHHHHhhhhhhhcccCeEEEEEeCCCCCHHHHHHHHHHHhcCCCC---CCCcHHHHHHHHHH--
Q 002308 177 LHIISIVGMGGIGKTTLAQLACNHVEVKREFDKTLWVCVSETFDEFRIAKAMLEALTGSTS---NLNALQSLLISIDE-- 251 (938)
Q Consensus 177 ~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~---~~~~~~~~~~~l~~-- 251 (938)
.+++.|+|+.|.||||+.+.+...... .+-...+|. .. .. ...+.++...+..... .......-.+.+..
T Consensus 29 ~~~~~itGpNg~GKStlLk~i~~~~~l-a~~G~~v~a--~~-~~-~~~~d~i~~~l~~~~si~~~~S~f~~el~~l~~~l 103 (213)
T cd03281 29 PSIMVITGPNSSGKSVYLKQVALIVFL-AHIGSFVPA--DS-AT-IGLVDKIFTRMSSRESVSSGQSAFMIDLYQVSKAL 103 (213)
T ss_pred ceEEEEECCCCCChHHHHHHHHHHHHH-HhCCCeeEc--CC-cE-EeeeeeeeeeeCCccChhhccchHHHHHHHHHHHH
Confidence 478999999999999999998753211 111111111 10 00 0111222222221111 11111111122222
Q ss_pred HhcCceEEEEEecCCCCCc-cChh----HHHHhhhCC-CCCcEEEEEcCChhhhhhh
Q 002308 252 SIAGKRFLLVLDDVWDGDY-IKWE----PFYRCLKKG-LHGSKILITTRKESIVSMM 302 (938)
Q Consensus 252 ~l~~~~~LlVlDdv~~~~~-~~~~----~l~~~l~~~-~~gs~ilvTtr~~~v~~~~ 302 (938)
.+..++-|+++|....... .+.. .+...+... ..+..+|+||-..+.....
T Consensus 104 ~~~~~~slvllDE~~~gtd~~~~~~~~~ail~~l~~~~~~~~~vli~TH~~~l~~~~ 160 (213)
T cd03281 104 RLATRRSLVLIDEFGKGTDTEDGAGLLIATIEHLLKRGPECPRVIVSTHFHELFNRS 160 (213)
T ss_pred HhCCCCcEEEeccccCCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEcChHHHHHhh
Confidence 2236789999999865421 1111 222333322 2345799999988776653
No 333
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=95.50 E-value=0.076 Score=57.72 Aligned_cols=51 Identities=25% Similarity=0.253 Sum_probs=37.4
Q ss_pred Cceecch---hhHHHHHHHHhccCc---ccCCCeEEEEEEccCCChHHHHHHHHhhh
Q 002308 150 EEICGRV---GERNALLSMLLCESS---EQQKGLHIISIVGMGGIGKTTLAQLACNH 200 (938)
Q Consensus 150 ~~~vGr~---~~~~~l~~~l~~~~~---~~~~~~~vv~i~G~~GiGKTtLa~~v~~~ 200 (938)
+++-|-+ +|+++|++.|..+.. -++.=++=|.++|++|.|||-||++++-.
T Consensus 304 ~dVkG~DEAK~ELeEiVefLkdP~kftrLGGKLPKGVLLvGPPGTGKTlLARAvAGE 360 (752)
T KOG0734|consen 304 EDVKGVDEAKQELEEIVEFLKDPTKFTRLGGKLPKGVLLVGPPGTGKTLLARAVAGE 360 (752)
T ss_pred ccccChHHHHHHHHHHHHHhcCcHHhhhccCcCCCceEEeCCCCCchhHHHHHhhcc
Confidence 4566765 477888888876531 11334567899999999999999999874
No 334
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=95.49 E-value=0.013 Score=60.75 Aligned_cols=96 Identities=21% Similarity=0.268 Sum_probs=48.1
Q ss_pred HHHHHHHHhccCcccCCCeEEEEEEccCCChHHHHHHHHhhhhhhhcccCeEEEEEeCCCCCHHHHHHHHHHHhcCCCCC
Q 002308 159 RNALLSMLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNHVEVKREFDKTLWVCVSETFDEFRIAKAMLEALTGSTSN 238 (938)
Q Consensus 159 ~~~l~~~l~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~ 238 (938)
...+++.+.. ..+-+.++|+.|+|||++++...... ....| .+.-++.+...+...+ +.+++.-......
T Consensus 22 ~~~ll~~l~~-------~~~pvLl~G~~GtGKT~li~~~l~~l-~~~~~-~~~~~~~s~~Tts~~~-q~~ie~~l~k~~~ 91 (272)
T PF12775_consen 22 YSYLLDLLLS-------NGRPVLLVGPSGTGKTSLIQNFLSSL-DSDKY-LVITINFSAQTTSNQL-QKIIESKLEKRRG 91 (272)
T ss_dssp HHHHHHHHHH-------CTEEEEEESSTTSSHHHHHHHHHHCS-TTCCE-EEEEEES-TTHHHHHH-HHCCCTTECECTT
T ss_pred HHHHHHHHHH-------cCCcEEEECCCCCchhHHHHhhhccC-Ccccc-ceeEeeccCCCCHHHH-HHHHhhcEEcCCC
Confidence 3456666653 24568999999999999999987631 11122 1334444443333322 2222221110000
Q ss_pred CCcHHHHHHHHHHHhcCceEEEEEecCCCCCccCh
Q 002308 239 LNALQSLLISIDESIAGKRFLLVLDDVWDGDYIKW 273 (938)
Q Consensus 239 ~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~~~~~ 273 (938)
. .. .--.+|+.++++||+.-...+.|
T Consensus 92 ~-~~--------gP~~~k~lv~fiDDlN~p~~d~y 117 (272)
T PF12775_consen 92 R-VY--------GPPGGKKLVLFIDDLNMPQPDKY 117 (272)
T ss_dssp E-EE--------EEESSSEEEEEEETTT-S---TT
T ss_pred C-CC--------CCCCCcEEEEEecccCCCCCCCC
Confidence 0 00 00136899999999965544443
No 335
>TIGR02236 recomb_radA DNA repair and recombination protein RadA. This family consists exclusively of archaeal RadA protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239), and archaeal RadB (TIGR02237). This protein is involved in DNA repair and recombination. The member from Pyrococcus horikoshii contains an intein.
Probab=95.49 E-value=0.064 Score=57.43 Aligned_cols=57 Identities=26% Similarity=0.288 Sum_probs=41.3
Q ss_pred CeEEEEEEccCCChHHHHHHHHhhhhhhhc----ccCeEEEEEeCCCCCHHHHHHHHHHHhc
Q 002308 176 GLHIISIVGMGGIGKTTLAQLACNHVEVKR----EFDKTLWVCVSETFDEFRIAKAMLEALT 233 (938)
Q Consensus 176 ~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~----~f~~~~wv~~~~~~~~~~~~~~i~~~l~ 233 (938)
...++-|+|++|+|||+++.+++....... .=..++||+....++.+.+. ++++.++
T Consensus 94 ~g~i~ei~G~~g~GKT~l~~~~~~~~~~~~~~g~~~~~~~yi~te~~f~~~rl~-~~~~~~g 154 (310)
T TIGR02236 94 TQAITEVFGEFGSGKTQICHQLAVNVQLPEEKGGLGGKAVYIDTENTFRPERIM-QMAEARG 154 (310)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhcCCcccCCCcceEEEEECCCCCCHHHHH-HHHHHcC
Confidence 568899999999999999999987532211 11379999999888877654 4444443
No 336
>PRK07667 uridine kinase; Provisional
Probab=95.48 E-value=0.034 Score=54.71 Aligned_cols=38 Identities=24% Similarity=0.340 Sum_probs=29.7
Q ss_pred HHHHHHHHhccCcccCCCeEEEEEEccCCChHHHHHHHHhhh
Q 002308 159 RNALLSMLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNH 200 (938)
Q Consensus 159 ~~~l~~~l~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~v~~~ 200 (938)
.+.+.+.+.... +...+|+|.|.+|+||||+|+.+...
T Consensus 3 ~~~~~~~~~~~~----~~~~iIgI~G~~gsGKStla~~L~~~ 40 (193)
T PRK07667 3 TNELINIMKKHK----ENRFILGIDGLSRSGKTTFVANLKEN 40 (193)
T ss_pred HHHHHHHHHhcC----CCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 455666665443 35589999999999999999999884
No 337
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=95.48 E-value=0.058 Score=52.08 Aligned_cols=118 Identities=17% Similarity=0.214 Sum_probs=60.4
Q ss_pred CeEEEEEEccCCChHHHHHHHHhhhhhhhcccCeEEEEEeCC--CCCHHHHHHHHHHHhcC--CCCC----------CCc
Q 002308 176 GLHIISIVGMGGIGKTTLAQLACNHVEVKREFDKTLWVCVSE--TFDEFRIAKAMLEALTG--STSN----------LNA 241 (938)
Q Consensus 176 ~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~--~~~~~~~~~~i~~~l~~--~~~~----------~~~ 241 (938)
...+++|.|+.|.|||||++.++... ......+++.-.. ....... ...+.. +... .+.
T Consensus 27 ~Ge~~~i~G~nGsGKStLl~~l~G~~---~~~~G~i~~~g~~~~~~~~~~~----~~~i~~~~q~~~~~~~tv~~~lLS~ 99 (173)
T cd03246 27 PGESLAIIGPSGSGKSTLARLILGLL---RPTSGRVRLDGADISQWDPNEL----GDHVGYLPQDDELFSGSIAENILSG 99 (173)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhcc---CCCCCeEEECCEEcccCCHHHH----HhheEEECCCCccccCcHHHHCcCH
Confidence 34589999999999999999998732 2223333332111 0111111 111110 0000 111
Q ss_pred HHHHHHHHHHHhcCceEEEEEecCCC-CCccChhHHHHhhhCC-CCCcEEEEEcCChhhhh
Q 002308 242 LQSLLISIDESIAGKRFLLVLDDVWD-GDYIKWEPFYRCLKKG-LHGSKILITTRKESIVS 300 (938)
Q Consensus 242 ~~~~~~~l~~~l~~~~~LlVlDdv~~-~~~~~~~~l~~~l~~~-~~gs~ilvTtr~~~v~~ 300 (938)
.+...-.+.+.+-.++=++++|+-.. -|......+...+... ..|..||++|.+.....
T Consensus 100 G~~qrv~la~al~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~ 160 (173)
T cd03246 100 GQRQRLGLARALYGNPRILVLDEPNSHLDVEGERALNQAIAALKAAGATRIVIAHRPETLA 160 (173)
T ss_pred HHHHHHHHHHHHhcCCCEEEEECCccccCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHH
Confidence 22223334555566677889998743 2222333344444331 23666888888776553
No 338
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=95.47 E-value=0.039 Score=54.51 Aligned_cols=110 Identities=11% Similarity=0.127 Sum_probs=54.9
Q ss_pred EEEEEEccCCChHHHHHHHHhhhhhhhcccCeEEEEEeCCCCCHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHhcCce
Q 002308 178 HIISIVGMGGIGKTTLAQLACNHVEVKREFDKTLWVCVSETFDEFRIAKAMLEALTGSTSNLNALQSLLISIDESIAGKR 257 (938)
Q Consensus 178 ~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~ 257 (938)
.+|.|.|+.|+||||++..+... ........++.. ..+. +..... ...+-.......+.......++..+...+
T Consensus 2 GlilI~GptGSGKTTll~~ll~~--~~~~~~~~i~t~-e~~~--E~~~~~-~~~~i~q~~vg~~~~~~~~~i~~aLr~~p 75 (198)
T cd01131 2 GLVLVTGPTGSGKSTTLAAMIDY--INKNKTHHILTI-EDPI--EFVHES-KRSLINQREVGLDTLSFENALKAALRQDP 75 (198)
T ss_pred cEEEEECCCCCCHHHHHHHHHHH--hhhcCCcEEEEE-cCCc--cccccC-ccceeeecccCCCccCHHHHHHHHhcCCc
Confidence 47899999999999999987773 332333333332 2211 110000 00000000000111223445666666666
Q ss_pred EEEEEecCCCCCccChhHHHHhhhCCCCCcEEEEEcCChhh
Q 002308 258 FLLVLDDVWDGDYIKWEPFYRCLKKGLHGSKILITTRKESI 298 (938)
Q Consensus 258 ~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtr~~~v 298 (938)
=.+++|++.+.+ .+... +.....|..++.|+-..++
T Consensus 76 d~ii~gEird~e--~~~~~---l~~a~~G~~v~~t~Ha~~~ 111 (198)
T cd01131 76 DVILVGEMRDLE--TIRLA---LTAAETGHLVMSTLHTNSA 111 (198)
T ss_pred CEEEEcCCCCHH--HHHHH---HHHHHcCCEEEEEecCCcH
Confidence 799999995432 22222 2222345557777765443
No 339
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated
Probab=95.47 E-value=0.081 Score=50.77 Aligned_cols=119 Identities=18% Similarity=0.040 Sum_probs=66.4
Q ss_pred CeEEEEEEccCCChHHHHHHHHhhhhhhhcccCeEEEEEeCC---CCCHHHHHHHHH--HHh--cCCC--C-CC--Cc--
Q 002308 176 GLHIISIVGMGGIGKTTLAQLACNHVEVKREFDKTLWVCVSE---TFDEFRIAKAML--EAL--TGST--S-NL--NA-- 241 (938)
Q Consensus 176 ~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~---~~~~~~~~~~i~--~~l--~~~~--~-~~--~~-- 241 (938)
....|.|+|..|-||||.|...+... ....+ .+..+-.-+ .......++.+- ... +... . .. .+
T Consensus 21 ~~g~v~v~~g~GkGKtt~a~g~a~ra-~g~G~-~V~ivQFlKg~~~~GE~~~l~~l~~v~~~~~g~~~~~~~~~~~e~~~ 98 (191)
T PRK05986 21 EKGLLIVHTGNGKGKSTAAFGMALRA-VGHGK-KVGVVQFIKGAWSTGERNLLEFGGGVEFHVMGTGFTWETQDRERDIA 98 (191)
T ss_pred cCCeEEEECCCCCChHHHHHHHHHHH-HHCCC-eEEEEEEecCCCccCHHHHHhcCCCcEEEECCCCCcccCCCcHHHHH
Confidence 34689999999999999998887742 22222 223332211 233444443321 000 0100 0 00 11
Q ss_pred -HHHHHHHHHHHhcC-ceEEEEEecCCC---CCccChhHHHHhhhCCCCCcEEEEEcCCh
Q 002308 242 -LQSLLISIDESIAG-KRFLLVLDDVWD---GDYIKWEPFYRCLKKGLHGSKILITTRKE 296 (938)
Q Consensus 242 -~~~~~~~l~~~l~~-~~~LlVlDdv~~---~~~~~~~~l~~~l~~~~~gs~ilvTtr~~ 296 (938)
..+.....++.+.. +-=++|||.+-. ......+++...+.....+..||+|-|+.
T Consensus 99 ~~~~~~~~a~~~l~~~~ydlvVLDEi~~Al~~gli~~eevi~~L~~rp~~~evVlTGR~~ 158 (191)
T PRK05986 99 AAREGWEEAKRMLADESYDLVVLDELTYALKYGYLDVEEVLEALNARPGMQHVVITGRGA 158 (191)
T ss_pred HHHHHHHHHHHHHhCCCCCEEEEehhhHHHHCCCccHHHHHHHHHcCCCCCEEEEECCCC
Confidence 11122333444444 445999999832 23455677888888777788999999975
No 340
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=95.46 E-value=0.092 Score=52.81 Aligned_cols=125 Identities=20% Similarity=0.229 Sum_probs=69.6
Q ss_pred eEEEEEEccCCChHHHHHHHHhhhhh-hhc----------cc---CeEEEEEe----CC--CCCHH--------------
Q 002308 177 LHIISIVGMGGIGKTTLAQLACNHVE-VKR----------EF---DKTLWVCV----SE--TFDEF-------------- 222 (938)
Q Consensus 177 ~~vv~i~G~~GiGKTtLa~~v~~~~~-~~~----------~f---~~~~wv~~----~~--~~~~~-------------- 222 (938)
..+++|+|+.|.|||||.+.+.--.. .++ .+ ..+.||.= .. +.++.
T Consensus 30 G~~~~iiGPNGaGKSTLlK~iLGll~p~~G~i~~~g~~~~~~~~~~~IgYVPQ~~~~d~~fP~tV~d~V~~g~~~~~g~~ 109 (254)
T COG1121 30 GEITALIGPNGAGKSTLLKAILGLLKPSSGEIKIFGKPVRKRRKRLRIGYVPQKSSVDRSFPITVKDVVLLGRYGKKGWF 109 (254)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCCcCCcceEEEccccccccccCCeEEEcCcccccCCCCCcCHHHHHHccCccccccc
Confidence 46899999999999999999987321 000 01 24555531 11 11111
Q ss_pred --------HHHHHHHHHhcCC-----C-CCCCcHHHHHHHHHHHhcCceEEEEEecCCC-CCccChhHHHHhhhC-CCCC
Q 002308 223 --------RIAKAMLEALTGS-----T-SNLNALQSLLISIDESIAGKRFLLVLDDVWD-GDYIKWEPFYRCLKK-GLHG 286 (938)
Q Consensus 223 --------~~~~~i~~~l~~~-----~-~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~-~~~~~~~~l~~~l~~-~~~g 286 (938)
+...+.++.++.. . ...+..+.-...+.+.|..++=|++||.--. .|...-..+...+.. ...|
T Consensus 110 ~~~~~~d~~~v~~aL~~Vgm~~~~~r~i~~LSGGQ~QRV~lARAL~~~p~lllLDEP~~gvD~~~~~~i~~lL~~l~~eg 189 (254)
T COG1121 110 RRLNKKDKEKVDEALERVGMEDLRDRQIGELSGGQKQRVLLARALAQNPDLLLLDEPFTGVDVAGQKEIYDLLKELRQEG 189 (254)
T ss_pred ccccHHHHHHHHHHHHHcCchhhhCCcccccCcHHHHHHHHHHHhccCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCC
Confidence 3334444444422 1 1223333334456778888899999997422 222223344444443 1238
Q ss_pred cEEEEEcCChhhhhh
Q 002308 287 SKILITTRKESIVSM 301 (938)
Q Consensus 287 s~ilvTtr~~~v~~~ 301 (938)
.-||++|-+-.....
T Consensus 190 ~tIl~vtHDL~~v~~ 204 (254)
T COG1121 190 KTVLMVTHDLGLVMA 204 (254)
T ss_pred CEEEEEeCCcHHhHh
Confidence 889999988654433
No 341
>COG0714 MoxR-like ATPases [General function prediction only]
Probab=95.42 E-value=0.062 Score=58.03 Aligned_cols=114 Identities=16% Similarity=0.090 Sum_probs=66.0
Q ss_pred ceecchhhHHHHHHHHhccCcccCCCeEEEEEEccCCChHHHHHHHHhhhhhhhcccCeEEEEEeCCCCCHHHHHHHHHH
Q 002308 151 EICGRVGERNALLSMLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNHVEVKREFDKTLWVCVSETFDEFRIAKAMLE 230 (938)
Q Consensus 151 ~~vGr~~~~~~l~~~l~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~ 230 (938)
.++|+++....+...+... +.+.+.|++|+|||+||+.++.. ... ..++|.+.......++.....-
T Consensus 25 ~~~g~~~~~~~~l~a~~~~--------~~vll~G~PG~gKT~la~~lA~~--l~~---~~~~i~~t~~l~p~d~~G~~~~ 91 (329)
T COG0714 25 VVVGDEEVIELALLALLAG--------GHVLLEGPPGVGKTLLARALARA--LGL---PFVRIQCTPDLLPSDLLGTYAY 91 (329)
T ss_pred eeeccHHHHHHHHHHHHcC--------CCEEEECCCCccHHHHHHHHHHH--hCC---CeEEEecCCCCCHHHhcCchhH
Confidence 3889888888888877743 45899999999999999999983 332 3455666665555554433222
Q ss_pred HhcCCCCCCCcHHHHHHHHHHHhcCceEEEEEecCCCCCccChhHHHHhhhC
Q 002308 231 ALTGSTSNLNALQSLLISIDESIAGKRFLLVLDDVWDGDYIKWEPFYRCLKK 282 (938)
Q Consensus 231 ~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~~~~~~~l~~~l~~ 282 (938)
............. ... ....-+.++.+|.++.........+...+..
T Consensus 92 ~~~~~~~~~~~~~--~gp---l~~~~~~ill~DEInra~p~~q~aLl~~l~e 138 (329)
T COG0714 92 AALLLEPGEFRFV--PGP---LFAAVRVILLLDEINRAPPEVQNALLEALEE 138 (329)
T ss_pred hhhhccCCeEEEe--cCC---cccccceEEEEeccccCCHHHHHHHHHHHhC
Confidence 2110000000000 000 0011115899999988765545556665544
No 342
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.42 E-value=0.1 Score=50.29 Aligned_cols=119 Identities=19% Similarity=0.224 Sum_probs=62.4
Q ss_pred CeEEEEEEccCCChHHHHHHHHhhhhhhhcccCeEEEEEeCCCCCHHHHHHHHHHHhcC--CC----CC--------CCc
Q 002308 176 GLHIISIVGMGGIGKTTLAQLACNHVEVKREFDKTLWVCVSETFDEFRIAKAMLEALTG--ST----SN--------LNA 241 (938)
Q Consensus 176 ~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~--~~----~~--------~~~ 241 (938)
...+++|.|+.|.|||||++.++... ......+++.-....+.. ..+...+.. +. .. .+.
T Consensus 25 ~Ge~~~i~G~nGsGKStLl~~l~G~~---~~~~G~i~~~g~~~~~~~---~~~~~~i~~~~q~~~~~~~~tv~~~~~LS~ 98 (173)
T cd03230 25 KGEIYGLLGPNGAGKTTLIKIILGLL---KPDSGEIKVLGKDIKKEP---EEVKRRIGYLPEEPSLYENLTVRENLKLSG 98 (173)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCC---CCCCeEEEECCEEcccch---HhhhccEEEEecCCccccCCcHHHHhhcCH
Confidence 34689999999999999999988742 122334443211100000 011111110 00 00 111
Q ss_pred HHHHHHHHHHHhcCceEEEEEecCCCC-CccChhHHHHhhhCC-CCCcEEEEEcCChhhhh
Q 002308 242 LQSLLISIDESIAGKRFLLVLDDVWDG-DYIKWEPFYRCLKKG-LHGSKILITTRKESIVS 300 (938)
Q Consensus 242 ~~~~~~~l~~~l~~~~~LlVlDdv~~~-~~~~~~~l~~~l~~~-~~gs~ilvTtr~~~v~~ 300 (938)
.+...-.+.+.+..++=++++|+-... |......+...+... ..|..||++|.+.....
T Consensus 99 G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~th~~~~~~ 159 (173)
T cd03230 99 GMKQRLALAQALLHDPELLILDEPTSGLDPESRREFWELLRELKKEGKTILLSSHILEEAE 159 (173)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHH
Confidence 222233455666778889999987432 222334444444432 23667888888876544
No 343
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=95.41 E-value=0.04 Score=59.43 Aligned_cols=81 Identities=19% Similarity=0.245 Sum_probs=49.4
Q ss_pred CceecchhhHHHHHHHHhcc-------Cc-ccCCCeEEEEEEccCCChHHHHHHHHhhhhhhhccc---CeEEEEEeC-C
Q 002308 150 EEICGRVGERNALLSMLLCE-------SS-EQQKGLHIISIVGMGGIGKTTLAQLACNHVEVKREF---DKTLWVCVS-E 217 (938)
Q Consensus 150 ~~~vGr~~~~~~l~~~l~~~-------~~-~~~~~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f---~~~~wv~~~-~ 217 (938)
..++|.++....+.-++... .. ......+-|.++|++|+|||++|+.++.. ....| +...|...+ .
T Consensus 12 ~~IiGQ~eAkk~lsvAl~n~~~r~~~~~~~~~e~~p~~ILLiGppG~GKT~lAraLA~~--l~~~fi~vdat~~~e~g~v 89 (441)
T TIGR00390 12 KYIIGQDNAKKSVAIALRNRYRRSQLNEELKDEVTPKNILMIGPTGVGKTEIARRLAKL--ANAPFIKVEATKFTEVGYV 89 (441)
T ss_pred hhccCHHHHHHHHHHHHHhhhhhhccccccccccCCceEEEECCCCCCHHHHHHHHHHH--hCCeEEEeecceeecCCcc
Confidence 45889888888887666532 00 00113467899999999999999999884 34333 322232222 2
Q ss_pred CCCHHHHHHHHHHHh
Q 002308 218 TFDEFRIAKAMLEAL 232 (938)
Q Consensus 218 ~~~~~~~~~~i~~~l 232 (938)
..+++++++.+...-
T Consensus 90 G~dvE~i~r~l~e~A 104 (441)
T TIGR00390 90 GRDVESMVRDLTDAA 104 (441)
T ss_pred cCCHHHHHHHHHHHH
Confidence 235666666665543
No 344
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.38 E-value=0.19 Score=53.70 Aligned_cols=91 Identities=14% Similarity=0.072 Sum_probs=53.8
Q ss_pred CCeEEEEEEccCCChHHHHHHHHhhhhhhhcccCeEEEEEeCCCC-CHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHh
Q 002308 175 KGLHIISIVGMGGIGKTTLAQLACNHVEVKREFDKTLWVCVSETF-DEFRIAKAMLEALTGSTSNLNALQSLLISIDESI 253 (938)
Q Consensus 175 ~~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l 253 (938)
.+.++++++|+.|+||||++..++.....+ . ..+.++++.... ...+-++..++.++.+.....+..++...+...-
T Consensus 204 ~~~~ii~lvGptGvGKTTt~akLA~~l~~~-g-~~V~lItaDtyR~gAveQLk~yae~lgvpv~~~~dp~dL~~al~~l~ 281 (407)
T PRK12726 204 SNHRIISLIGQTGVGKTTTLVKLGWQLLKQ-N-RTVGFITTDTFRSGAVEQFQGYADKLDVELIVATSPAELEEAVQYMT 281 (407)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHHHHc-C-CeEEEEeCCccCccHHHHHHHHhhcCCCCEEecCCHHHHHHHHHHHH
Confidence 356899999999999999999998753222 2 345666654321 2234455555555543222334455555454332
Q ss_pred c-CceEEEEEecCCC
Q 002308 254 A-GKRFLLVLDDVWD 267 (938)
Q Consensus 254 ~-~~~~LlVlDdv~~ 267 (938)
. +..=+|++|-.-.
T Consensus 282 ~~~~~D~VLIDTAGr 296 (407)
T PRK12726 282 YVNCVDHILIDTVGR 296 (407)
T ss_pred hcCCCCEEEEECCCC
Confidence 1 3446888898754
No 345
>PRK00889 adenylylsulfate kinase; Provisional
Probab=95.36 E-value=0.047 Score=52.86 Aligned_cols=25 Identities=28% Similarity=0.395 Sum_probs=22.4
Q ss_pred CeEEEEEEccCCChHHHHHHHHhhh
Q 002308 176 GLHIISIVGMGGIGKTTLAQLACNH 200 (938)
Q Consensus 176 ~~~vv~i~G~~GiGKTtLa~~v~~~ 200 (938)
...+|+|.|.+|+||||+|+.++..
T Consensus 3 ~g~~i~~~G~~GsGKST~a~~la~~ 27 (175)
T PRK00889 3 RGVTVWFTGLSGAGKTTIARALAEK 27 (175)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4569999999999999999999984
No 346
>PF00154 RecA: recA bacterial DNA recombination protein; InterPro: IPR013765 The recA gene product is a multifunctional enzyme that plays a role in homologous recombination, DNA repair and induction of the SOS response []. In homologous recombination, the protein functions as a DNA-dependent ATPase, promoting synapsis, heteroduplex formation and strand exchange between homologous DNAs []. RecA also acts as a protease cofactor that promotes autodigestion of the lexA product and phage repressors. The proteolytic inactivation of the lexA repressor by an activated form of recA may cause a derepression of the 20 or so genes involved in the SOS response, which regulates DNA repair, induced mutagenesis, delayed cell division and prophage induction in response to DNA damage []. RecA is a protein of about 350 amino-acid residues. Its sequence is very well conserved [, , ] among eubacterial species. It is also found in the chloroplast of plants []. RecA-like proteins are found in archaea and diverse eukaryotic organisms, like fission yeast, mouse or human. In the filament visualised by X-ray crystallography, beta-strand 3, the loop C-terminal to beta-strand 2, and alpha-helix D of the core domain form one surface that packs against alpha-helix A and beta-strand 0 (the N-terminal domain) of an adjacent monomer during polymerisation []. The core ATP-binding site domain is well conserved, with 14 invariant residues. It contains the nucleotide binding loop between beta-strand 1 and alpha-helix C. The Escherichia coli sequence GPESSGKT matches the consensus sequence of amino acids (G/A)XXXXGK(T/S) for the Walker A box (also referred to as the P-loop) found in a number of nucleoside triphosphate (NTP)-binding proteins. Another nucleotide binding motif, the Walker B box is found at beta-strand 4 in the RecA structure. The Walker B box is characterised by four hydrophobic amino acids followed by an acidic residue (usually aspartate). Nucleotide specificity and additional ATP binding interactions are contributed by the amino acid residues at beta-strand 2 and the loop C-terminal to that strand, all of which are greater than 90% conserved among bacterial RecA proteins.; GO: 0003697 single-stranded DNA binding, 0005524 ATP binding, 0006281 DNA repair; PDB: 2IN0_A 1MO3_A 3IFJ_A 2IN8_A 2IMZ_B 1G18_A 1MO4_A 3IGD_A 2L8L_A 2IN9_A ....
Probab=95.34 E-value=0.033 Score=58.43 Aligned_cols=84 Identities=23% Similarity=0.188 Sum_probs=52.0
Q ss_pred CCeEEEEEEccCCChHHHHHHHHhhhhhhhcccCeEEEEEeCCCCCHHHHHHHHHHHhcCCCC-----CCCcHHHHHHHH
Q 002308 175 KGLHIISIVGMGGIGKTTLAQLACNHVEVKREFDKTLWVCVSETFDEFRIAKAMLEALTGSTS-----NLNALQSLLISI 249 (938)
Q Consensus 175 ~~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~-----~~~~~~~~~~~l 249 (938)
+..+++-|+|+.|+||||||..++.. .+..-..++|+++...++... ++.++.... .....++....+
T Consensus 51 p~G~ivEi~G~~ssGKttLaL~~ia~--~q~~g~~~a~ID~e~~ld~~~-----a~~lGvdl~rllv~~P~~~E~al~~~ 123 (322)
T PF00154_consen 51 PRGRIVEIYGPESSGKTTLALHAIAE--AQKQGGICAFIDAEHALDPEY-----AESLGVDLDRLLVVQPDTGEQALWIA 123 (322)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHHHH--HHHTT-EEEEEESSS---HHH-----HHHTT--GGGEEEEE-SSHHHHHHHH
T ss_pred ccCceEEEeCCCCCchhhhHHHHHHh--hhcccceeEEecCcccchhhH-----HHhcCccccceEEecCCcHHHHHHHH
Confidence 35679999999999999999998874 444446789999988766543 334432211 123345555666
Q ss_pred HHHhcC-ceEEEEEecC
Q 002308 250 DESIAG-KRFLLVLDDV 265 (938)
Q Consensus 250 ~~~l~~-~~~LlVlDdv 265 (938)
.+.++. .--++|+|-|
T Consensus 124 e~lirsg~~~lVVvDSv 140 (322)
T PF00154_consen 124 EQLIRSGAVDLVVVDSV 140 (322)
T ss_dssp HHHHHTTSESEEEEE-C
T ss_pred HHHhhcccccEEEEecC
Confidence 666653 4458899987
No 347
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=95.34 E-value=0.1 Score=53.39 Aligned_cols=50 Identities=16% Similarity=0.272 Sum_probs=35.8
Q ss_pred CCeEEEEEEccCCChHHHHHHHHhhhhhhhcccCeEEEEEeCCCCCHHHHHHHH
Q 002308 175 KGLHIISIVGMGGIGKTTLAQLACNHVEVKREFDKTLWVCVSETFDEFRIAKAM 228 (938)
Q Consensus 175 ~~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i 228 (938)
+...++.|.|.+|+|||++|.++.... . ..-..++|++... +..++.+.+
T Consensus 19 ~~gs~~lI~G~pGsGKT~la~~~l~~~-~-~~ge~~lyvs~ee--~~~~i~~~~ 68 (237)
T TIGR03877 19 PERNVVLLSGGPGTGKSIFSQQFLWNG-L-QMGEPGIYVALEE--HPVQVRRNM 68 (237)
T ss_pred cCCeEEEEEcCCCCCHHHHHHHHHHHH-H-HcCCcEEEEEeeC--CHHHHHHHH
Confidence 456899999999999999999877632 2 2235678888665 455555553
No 348
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=95.34 E-value=0.037 Score=50.43 Aligned_cols=44 Identities=32% Similarity=0.389 Sum_probs=32.2
Q ss_pred EEEEEccCCChHHHHHHHHhhhhhhhcccCeEEEEEeCCCCCHHHHHHHHHHHhcCC
Q 002308 179 IISIVGMGGIGKTTLAQLACNHVEVKREFDKTLWVCVSETFDEFRIAKAMLEALTGS 235 (938)
Q Consensus 179 vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~ 235 (938)
+|.|.|++|+||||+|+.++++. .-.| ++ .-.++++|+++.+.+
T Consensus 2 ~ItIsG~pGsG~TTva~~lAe~~--gl~~-----vs------aG~iFR~~A~e~gms 45 (179)
T COG1102 2 VITISGLPGSGKTTVARELAEHL--GLKL-----VS------AGTIFREMARERGMS 45 (179)
T ss_pred EEEeccCCCCChhHHHHHHHHHh--CCce-----ee------ccHHHHHHHHHcCCC
Confidence 68999999999999999998842 2111 22 236788898887643
No 349
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=95.33 E-value=0.061 Score=53.04 Aligned_cols=79 Identities=18% Similarity=0.258 Sum_probs=43.0
Q ss_pred EEEEEccCCChHHHHHHHHhhhhhhhc-ccC---eEEEEEeCCCCCHHHHHHHHHHHh----cCCCCCCCcHHHHHHHHH
Q 002308 179 IISIVGMGGIGKTTLAQLACNHVEVKR-EFD---KTLWVCVSETFDEFRIAKAMLEAL----TGSTSNLNALQSLLISID 250 (938)
Q Consensus 179 vv~i~G~~GiGKTtLa~~v~~~~~~~~-~f~---~~~wv~~~~~~~~~~~~~~i~~~l----~~~~~~~~~~~~~~~~l~ 250 (938)
||+|.|.+|+||||+|+.+... ... ... ....+.............. -... ....+..-+.+.+.+.+.
T Consensus 1 IIgI~G~sgSGKTTla~~L~~~--L~~~~~~~~~~~~~~~~d~~~~~~~~~~~-~~~~~~~~~~~~p~a~d~~~l~~~l~ 77 (194)
T PF00485_consen 1 IIGIAGPSGSGKTTLAKRLAQI--LNKRGIPAMEMDIILSLDDFYDDYHLRDR-KGRGENRYNFDHPDAFDFDLLKEDLK 77 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH--HTTCTTTCCCSEEEEEGGGGBHHHHHHHH-HHHCTTTSSTTSGGGBSHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHH--hCccCcCccceeEEEeecccccccchhhH-hhccccccCCCCccccCHHHHHHHHH
Confidence 6999999999999999999884 322 222 2333333222222222111 1111 111233456677777777
Q ss_pred HHhcCceEEE
Q 002308 251 ESIAGKRFLL 260 (938)
Q Consensus 251 ~~l~~~~~Ll 260 (938)
....++..-+
T Consensus 78 ~L~~g~~i~~ 87 (194)
T PF00485_consen 78 ALKNGGSIEI 87 (194)
T ss_dssp HHHTTSCEEE
T ss_pred HHhCCCcccc
Confidence 7666665443
No 350
>KOG0743 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=95.32 E-value=0.35 Score=52.15 Aligned_cols=123 Identities=15% Similarity=0.123 Sum_probs=65.8
Q ss_pred EEEEEEccCCChHHHHHHHHhhhhhhhcccCeEEEEEeCCCCCHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHhcCce
Q 002308 178 HIISIVGMGGIGKTTLAQLACNHVEVKREFDKTLWVCVSETFDEFRIAKAMLEALTGSTSNLNALQSLLISIDESIAGKR 257 (938)
Q Consensus 178 ~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~ 257 (938)
|=-.++|++|.|||+++.++++... |+ +.=+..+...+-.+ ++.++... ..+
T Consensus 236 RGYLLYGPPGTGKSS~IaAmAn~L~----yd-IydLeLt~v~~n~d-Lr~LL~~t----------------------~~k 287 (457)
T KOG0743|consen 236 RGYLLYGPPGTGKSSFIAAMANYLN----YD-IYDLELTEVKLDSD-LRHLLLAT----------------------PNK 287 (457)
T ss_pred ccceeeCCCCCCHHHHHHHHHhhcC----Cc-eEEeeeccccCcHH-HHHHHHhC----------------------CCC
Confidence 3457899999999999999998421 22 12222222211112 22222221 234
Q ss_pred EEEEEecCCCC------------------CccChhHHHHhhhC--CCC-CcEE-EEEcCChhhhhh-----hcCCceEeC
Q 002308 258 FLLVLDDVWDG------------------DYIKWEPFYRCLKK--GLH-GSKI-LITTRKESIVSM-----MRSTDIISI 310 (938)
Q Consensus 258 ~LlVlDdv~~~------------------~~~~~~~l~~~l~~--~~~-gs~i-lvTtr~~~v~~~-----~~~~~~~~l 310 (938)
-+||+.|++.. ....+--++.++.. ... +-|| |.||...+-... -.....+.+
T Consensus 288 SIivIEDIDcs~~l~~~~~~~~~~~~~~~~~VTlSGLLNfiDGlwSscg~ERIivFTTNh~EkLDPALlRpGRmDmhI~m 367 (457)
T KOG0743|consen 288 SILLIEDIDCSFDLRERRKKKKENFEGDLSRVTLSGLLNFLDGLWSSCGDERIIVFTTNHKEKLDPALLRPGRMDMHIYM 367 (457)
T ss_pred cEEEEeecccccccccccccccccccCCcceeehHHhhhhhccccccCCCceEEEEecCChhhcCHhhcCCCcceeEEEc
Confidence 56666666321 00112223333332 122 2355 457776653332 122446788
Q ss_pred CCCChHHHHHHHHHhhcC
Q 002308 311 EELAEEECWVLFKRLAFF 328 (938)
Q Consensus 311 ~~L~~~~~~~lf~~~~~~ 328 (938)
+-=+.+....|+..+...
T Consensus 368 gyCtf~~fK~La~nYL~~ 385 (457)
T KOG0743|consen 368 GYCTFEAFKTLASNYLGI 385 (457)
T ss_pred CCCCHHHHHHHHHHhcCC
Confidence 888999999999998754
No 351
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=95.30 E-value=0.26 Score=56.70 Aligned_cols=133 Identities=17% Similarity=0.162 Sum_probs=75.0
Q ss_pred CCeEEEEEEccCCChHHHHHHHHhhhhhhhcccCeEEEEEeCCCCCHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHhc
Q 002308 175 KGLHIISIVGMGGIGKTTLAQLACNHVEVKREFDKTLWVCVSETFDEFRIAKAMLEALTGSTSNLNALQSLLISIDESIA 254 (938)
Q Consensus 175 ~~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~ 254 (938)
...+.+.++|++|.|||.||+++++ ..+..| +.+... ++.....+ .....+........+
T Consensus 274 ~~~~giLl~GpPGtGKT~lAkava~--~~~~~f-----i~v~~~--------~l~sk~vG-----esek~ir~~F~~A~~ 333 (494)
T COG0464 274 RPPKGVLLYGPPGTGKTLLAKAVAL--ESRSRF-----ISVKGS--------ELLSKWVG-----ESEKNIRELFEKARK 333 (494)
T ss_pred CCCCeeEEECCCCCCHHHHHHHHHh--hCCCeE-----EEeeCH--------HHhccccc-----hHHHHHHHHHHHHHc
Confidence 4566899999999999999999999 333334 222221 11111110 111222333333445
Q ss_pred CceEEEEEecCCCC-----Cc------cChhHHHHhhhCC--CCCcEEEEEcCChhhhhh-h----cCCceEeCCCCChH
Q 002308 255 GKRFLLVLDDVWDG-----DY------IKWEPFYRCLKKG--LHGSKILITTRKESIVSM-M----RSTDIISIEELAEE 316 (938)
Q Consensus 255 ~~~~LlVlDdv~~~-----~~------~~~~~l~~~l~~~--~~gs~ilvTtr~~~v~~~-~----~~~~~~~l~~L~~~ 316 (938)
..+..|++|+++.. .. ....+++..+... ..+..||-||..+..... + .-...+.+.+-+.+
T Consensus 334 ~~p~iiFiDEiDs~~~~r~~~~~~~~~r~~~~lL~~~d~~e~~~~v~vi~aTN~p~~ld~a~lR~gRfd~~i~v~~pd~~ 413 (494)
T COG0464 334 LAPSIIFIDEIDSLASGRGPSEDGSGRRVVGQLLTELDGIEKAEGVLVIAATNRPDDLDPALLRPGRFDRLIYVPLPDLE 413 (494)
T ss_pred CCCcEEEEEchhhhhccCCCCCchHHHHHHHHHHHHhcCCCccCceEEEecCCCccccCHhhcccCccceEeecCCCCHH
Confidence 78899999998431 10 1123333334322 233334555554433322 1 22457888888999
Q ss_pred HHHHHHHHhhc
Q 002308 317 ECWVLFKRLAF 327 (938)
Q Consensus 317 ~~~~lf~~~~~ 327 (938)
+..+.|..+..
T Consensus 414 ~r~~i~~~~~~ 424 (494)
T COG0464 414 ERLEIFKIHLR 424 (494)
T ss_pred HHHHHHHHHhc
Confidence 99999999875
No 352
>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=95.30 E-value=0.19 Score=52.67 Aligned_cols=34 Identities=12% Similarity=-0.028 Sum_probs=25.8
Q ss_pred hhHHHHHHhhChHHHHHHHHHHHHHHHHHHHHHH
Q 002308 3 KTLHEVKLVVGVEKEVKSLTSHLQAIQAVSDDAE 36 (938)
Q Consensus 3 ~~~~e~~~~~~~~~~~~~l~~~l~~~~~~l~~a~ 36 (938)
+++.++.++.....-...++..+..|+..+..+.
T Consensus 11 k~ar~~al~G~~d~~~~~~~g~~~~~~r~l~s~~ 44 (491)
T KOG0738|consen 11 KLAREYALLGNYDSAGIYYRGLLYLMNRYLVSTG 44 (491)
T ss_pred HHHHHHHHhcCcchhHHHHHhHHHHHHHHHhccC
Confidence 4566777888888878888888888888776554
No 353
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=95.30 E-value=0.013 Score=53.49 Aligned_cols=21 Identities=43% Similarity=0.623 Sum_probs=19.4
Q ss_pred EEEEccCCChHHHHHHHHhhh
Q 002308 180 ISIVGMGGIGKTTLAQLACNH 200 (938)
Q Consensus 180 v~i~G~~GiGKTtLa~~v~~~ 200 (938)
|+|.|.+|+||||+|+++...
T Consensus 1 I~i~G~~GsGKtTia~~L~~~ 21 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAER 21 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHH
Confidence 689999999999999999884
No 354
>PF10236 DAP3: Mitochondrial ribosomal death-associated protein 3; InterPro: IPR019368 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of conserved proteins which were originally described as death-associated-protein-3 (DAP-3). The proteins carry a P-loop DNA-binding motif, and induce apoptosis []. DAP3 has been shown to be a pro-apoptotic factor in the mitochondrial matrix [] and to be crucial for mitochondrial biogenesis and so has also been designated as MRP-S29 (mitochondrial ribosomal protein subunit 29).
Probab=95.28 E-value=0.12 Score=54.77 Aligned_cols=49 Identities=20% Similarity=0.173 Sum_probs=32.8
Q ss_pred eEeCCCCChHHHHHHHHHhhcCCCCCchhhHHHHHHHHHHHhcCCChhHH
Q 002308 307 IISIEELAEEECWVLFKRLAFFGRSTEECEKLEQIGQRIARKCKGLPLAA 356 (938)
Q Consensus 307 ~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai 356 (938)
++++.+++.+|+..++.-+.-..-... ....+...+++....+|+|--+
T Consensus 258 ~i~v~~~s~~E~~~ll~yy~~~~~l~~-~~~~~~~~e~~~~~s~GNp~el 306 (309)
T PF10236_consen 258 PIEVPRLSKEEARSLLEYYADSGWLRS-RVDEELVLEKLFLSSNGNPREL 306 (309)
T ss_pred eEEeCCCCHHHHHHHHHHHHHCCcccc-CCCCHHHHHHHHHhcCCCHHHh
Confidence 789999999999999988764322211 1222334567777778988643
No 355
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=95.28 E-value=0.049 Score=57.60 Aligned_cols=83 Identities=25% Similarity=0.322 Sum_probs=53.5
Q ss_pred CeEEEEEEccCCChHHHHHHHHhhhhhhhcccCeEEEEEeCCCCCHHHHHHHHHHHhcCCCC-----CCCcHHHHHHHHH
Q 002308 176 GLHIISIVGMGGIGKTTLAQLACNHVEVKREFDKTLWVCVSETFDEFRIAKAMLEALTGSTS-----NLNALQSLLISID 250 (938)
Q Consensus 176 ~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~-----~~~~~~~~~~~l~ 250 (938)
...+|.|-|.+|||||||..+++.+ ....- .++||+..+... + .+--++.|+.... ...+++...+.+.
T Consensus 92 ~Gs~iLIgGdPGIGKSTLLLQva~~--lA~~~-~vLYVsGEES~~--Q-iklRA~RL~~~~~~l~l~aEt~~e~I~~~l~ 165 (456)
T COG1066 92 PGSVILIGGDPGIGKSTLLLQVAAR--LAKRG-KVLYVSGEESLQ--Q-IKLRADRLGLPTNNLYLLAETNLEDIIAELE 165 (456)
T ss_pred cccEEEEccCCCCCHHHHHHHHHHH--HHhcC-cEEEEeCCcCHH--H-HHHHHHHhCCCccceEEehhcCHHHHHHHHH
Confidence 4578999999999999999999985 33333 677777655432 2 2233445553322 2244555544444
Q ss_pred HHhcCceEEEEEecCCC
Q 002308 251 ESIAGKRFLLVLDDVWD 267 (938)
Q Consensus 251 ~~l~~~~~LlVlDdv~~ 267 (938)
+ .++-++|+|-+..
T Consensus 166 ~---~~p~lvVIDSIQT 179 (456)
T COG1066 166 Q---EKPDLVVIDSIQT 179 (456)
T ss_pred h---cCCCEEEEeccce
Confidence 3 6788999999843
No 356
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=95.27 E-value=0.14 Score=60.36 Aligned_cols=157 Identities=13% Similarity=0.126 Sum_probs=80.5
Q ss_pred ceecchhhHHHHHHHHhccCcc------cCCCeEEEEEEccCCChHHHHHHHHhhhhhhhcccCeEEEEEeCCCCCHHHH
Q 002308 151 EICGRVGERNALLSMLLCESSE------QQKGLHIISIVGMGGIGKTTLAQLACNHVEVKREFDKTLWVCVSETFDEFRI 224 (938)
Q Consensus 151 ~~vGr~~~~~~l~~~l~~~~~~------~~~~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~ 224 (938)
.+.|.+...+++.+.+...... ...-.+-|.|+|++|+|||++|+.++.. ....| +.++.+. +
T Consensus 153 di~g~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~gill~G~~G~GKt~~~~~~a~~--~~~~f---~~is~~~------~ 221 (644)
T PRK10733 153 DVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGE--AKVPF---FTISGSD------F 221 (644)
T ss_pred HHcCHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHH--cCCCE---EEEehHH------h
Confidence 4667666555554443221100 0112234899999999999999999873 33222 2222221 1
Q ss_pred HHHHHHHhcCCCCCCCcHHHHHHHHHHHhcCceEEEEEecCCCCC----------ccChhHH-HHh---hhCC--CCCcE
Q 002308 225 AKAMLEALTGSTSNLNALQSLLISIDESIAGKRFLLVLDDVWDGD----------YIKWEPF-YRC---LKKG--LHGSK 288 (938)
Q Consensus 225 ~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~----------~~~~~~l-~~~---l~~~--~~gs~ 288 (938)
. ....+ .........+.......+.+|++|+++... ...+... ... +... ..+.-
T Consensus 222 ~----~~~~g-----~~~~~~~~~f~~a~~~~P~IifIDEiD~l~~~r~~~~~g~~~~~~~~ln~lL~~mdg~~~~~~vi 292 (644)
T PRK10733 222 V----EMFVG-----VGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGII 292 (644)
T ss_pred H----Hhhhc-----ccHHHHHHHHHHHHhcCCcEEEehhHhhhhhccCCCCCCCchHHHHHHHHHHHhhhcccCCCCee
Confidence 1 11100 011222233333334567899999985421 0112222 222 2221 23444
Q ss_pred EEEEcCChhhhhh-h----cCCceEeCCCCChHHHHHHHHHhhc
Q 002308 289 ILITTRKESIVSM-M----RSTDIISIEELAEEECWVLFKRLAF 327 (938)
Q Consensus 289 ilvTtr~~~v~~~-~----~~~~~~~l~~L~~~~~~~lf~~~~~ 327 (938)
+|.||..++.... . .-...+.+..-+.++..+++..+..
T Consensus 293 vIaaTN~p~~lD~Al~RpgRfdr~i~v~~Pd~~~R~~Il~~~~~ 336 (644)
T PRK10733 293 VIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMR 336 (644)
T ss_pred EEEecCChhhcCHHHhCCcccceEEEcCCCCHHHHHHHHHHHhh
Confidence 5557776654332 1 1245778888888888888888764
No 357
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=95.27 E-value=0.011 Score=52.09 Aligned_cols=28 Identities=32% Similarity=0.577 Sum_probs=19.5
Q ss_pred EEEEccCCChHHHHHHHHhhhhhhhcccCe
Q 002308 180 ISIVGMGGIGKTTLAQLACNHVEVKREFDK 209 (938)
Q Consensus 180 v~i~G~~GiGKTtLa~~v~~~~~~~~~f~~ 209 (938)
|.|+|.+|+|||++|+.++. .....|..
T Consensus 2 vLleg~PG~GKT~la~~lA~--~~~~~f~R 29 (131)
T PF07726_consen 2 VLLEGVPGVGKTTLAKALAR--SLGLSFKR 29 (131)
T ss_dssp EEEES---HHHHHHHHHHHH--HTT--EEE
T ss_pred EeeECCCccHHHHHHHHHHH--HcCCceeE
Confidence 68999999999999999998 56666754
No 358
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=95.26 E-value=0.04 Score=55.03 Aligned_cols=63 Identities=27% Similarity=0.274 Sum_probs=38.1
Q ss_pred hHHHHHHHHhccCcccCCCeEEEEEEccCCChHHHHHHHHhhhhhhhcccCeEEEEEeCCCCCHHHH
Q 002308 158 ERNALLSMLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNHVEVKREFDKTLWVCVSETFDEFRI 224 (938)
Q Consensus 158 ~~~~l~~~l~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~ 224 (938)
+..++.+.+.... .+..+|+|.|+||+|||||..++....+.+++=-.++-|+-|.+++--++
T Consensus 14 ~~~~ll~~l~~~~----g~a~~iGiTG~PGaGKSTli~~l~~~~~~~g~~VaVlAVDPSSp~tGGAl 76 (266)
T PF03308_consen 14 EARELLKRLYPHT----GRAHVIGITGPPGAGKSTLIDALIRELRERGKRVAVLAVDPSSPFTGGAL 76 (266)
T ss_dssp HHHHHHHHHGGGT----T-SEEEEEEE-TTSSHHHHHHHHHHHHHHTT--EEEEEE-GGGGCC---S
T ss_pred HHHHHHHHHHhhc----CCceEEEeeCCCCCcHHHHHHHHHHHHhhcCCceEEEEECCCCCCCCCcc
Confidence 4556666666543 36789999999999999999999886543333234555555555544333
No 359
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=95.25 E-value=0.1 Score=57.65 Aligned_cols=25 Identities=32% Similarity=0.355 Sum_probs=22.4
Q ss_pred CeEEEEEEccCCChHHHHHHHHhhh
Q 002308 176 GLHIISIVGMGGIGKTTLAQLACNH 200 (938)
Q Consensus 176 ~~~vv~i~G~~GiGKTtLa~~v~~~ 200 (938)
.+.++.++|.+|+||||.|..++..
T Consensus 98 ~p~vi~~vG~~GsGKTTtaakLA~~ 122 (428)
T TIGR00959 98 PPTVILMVGLQGSGKTTTCGKLAYY 122 (428)
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHH
Confidence 4679999999999999999988874
No 360
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=95.25 E-value=0.032 Score=51.81 Aligned_cols=36 Identities=28% Similarity=0.236 Sum_probs=27.1
Q ss_pred eEEEEEEccCCChHHHHHHHHhhhhhhhcccCeEEEEE
Q 002308 177 LHIISIVGMGGIGKTTLAQLACNHVEVKREFDKTLWVC 214 (938)
Q Consensus 177 ~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~ 214 (938)
..+|.|.|.+|+||||||+++... ....-..+++++
T Consensus 2 g~vIwltGlsGsGKtTlA~~L~~~--L~~~g~~~~~LD 37 (156)
T PF01583_consen 2 GFVIWLTGLSGSGKTTLARALERR--LFARGIKVYLLD 37 (156)
T ss_dssp -EEEEEESSTTSSHHHHHHHHHHH--HHHTTS-EEEEE
T ss_pred CEEEEEECCCCCCHHHHHHHHHHH--HHHcCCcEEEec
Confidence 468999999999999999999984 444444566665
No 361
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=95.24 E-value=0.099 Score=53.11 Aligned_cols=27 Identities=33% Similarity=0.437 Sum_probs=24.0
Q ss_pred CCCeEEEEEEccCCChHHHHHHHHhhh
Q 002308 174 QKGLHIISIVGMGGIGKTTLAQLACNH 200 (938)
Q Consensus 174 ~~~~~vv~i~G~~GiGKTtLa~~v~~~ 200 (938)
.....+++|.|+.|+|||||++.+...
T Consensus 30 ~~~~~iigi~G~~GsGKTTl~~~L~~~ 56 (229)
T PRK09270 30 PQRRTIVGIAGPPGAGKSTLAEFLEAL 56 (229)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 346789999999999999999999874
No 362
>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=95.24 E-value=0.31 Score=56.57 Aligned_cols=182 Identities=15% Similarity=0.110 Sum_probs=98.7
Q ss_pred Cceecchh---hHHHHHHHHhccCcc---cCCCeEEEEEEccCCChHHHHHHHHhhhhhhhcccCeEEEEEeCCCCCHHH
Q 002308 150 EEICGRVG---ERNALLSMLLCESSE---QQKGLHIISIVGMGGIGKTTLAQLACNHVEVKREFDKTLWVCVSETFDEFR 223 (938)
Q Consensus 150 ~~~vGr~~---~~~~l~~~l~~~~~~---~~~~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~ 223 (938)
.++.|-++ |++++++.|..+..- +..-++=+.++|++|+|||-||++++-.. .+-|++++..
T Consensus 311 kDVAG~deAK~El~E~V~fLKNP~~Y~~lGAKiPkGvLL~GPPGTGKTLLAKAiAGEA-------gVPF~svSGS----- 378 (774)
T KOG0731|consen 311 KDVAGVDEAKEELMEFVKFLKNPEQYQELGAKIPKGVLLVGPPGTGKTLLAKAIAGEA-------GVPFFSVSGS----- 378 (774)
T ss_pred ccccCcHHHHHHHHHHHHHhcCHHHHHHcCCcCcCceEEECCCCCcHHHHHHHHhccc-------CCceeeechH-----
Confidence 45778765 555666666554311 12345668999999999999999998842 3445565542
Q ss_pred HHHHHHHHhcCCCCCCCcHHHHHHHHHHHhcCceEEEEEecCCCCC---------------ccChhHHHHhhhCCCCCc-
Q 002308 224 IAKAMLEALTGSTSNLNALQSLLISIDESIAGKRFLLVLDDVWDGD---------------YIKWEPFYRCLKKGLHGS- 287 (938)
Q Consensus 224 ~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~---------------~~~~~~l~~~l~~~~~gs- 287 (938)
+..+.+.+.. ...+. ......-...+.+|.+|+++... ....+++..-+.....+.
T Consensus 379 ---EFvE~~~g~~--asrvr---~lf~~ar~~aP~iifideida~~~~r~G~~~~~~~~e~e~tlnQll~emDgf~~~~~ 450 (774)
T KOG0731|consen 379 ---EFVEMFVGVG--ASRVR---DLFPLARKNAPSIIFIDEIDAVGRKRGGKGTGGGQDEREQTLNQLLVEMDGFETSKG 450 (774)
T ss_pred ---HHHHHhcccc--hHHHH---HHHHHhhccCCeEEEecccccccccccccccCCCChHHHHHHHHHHHHhcCCcCCCc
Confidence 1222222111 11111 11222223567888888773211 111233333333322222
Q ss_pred EEE-EEcCChhhhhhh-----cCCceEeCCCCChHHHHHHHHHhhcCCCCCchhhHHHHHHHHHHHhcCCChhH
Q 002308 288 KIL-ITTRKESIVSMM-----RSTDIISIEELAEEECWVLFKRLAFFGRSTEECEKLEQIGQRIARKCKGLPLA 355 (938)
Q Consensus 288 ~il-vTtr~~~v~~~~-----~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pla 355 (938)
-|+ -+|+..++.... .-+..+.++.=+.....++|..++..-... .+..++++ |+...-|++=|
T Consensus 451 vi~~a~tnr~d~ld~allrpGRfdr~i~i~~p~~~~r~~i~~~h~~~~~~~---~e~~dl~~-~a~~t~gf~ga 520 (774)
T KOG0731|consen 451 VIVLAATNRPDILDPALLRPGRFDRQIQIDLPDVKGRASILKVHLRKKKLD---DEDVDLSK-LASLTPGFSGA 520 (774)
T ss_pred EEEEeccCCccccCHHhcCCCccccceeccCCchhhhHHHHHHHhhccCCC---cchhhHHH-HHhcCCCCcHH
Confidence 233 345444443321 225678888888888999999887543322 33444555 88877777643
No 363
>PRK10867 signal recognition particle protein; Provisional
Probab=95.22 E-value=0.081 Score=58.39 Aligned_cols=25 Identities=36% Similarity=0.432 Sum_probs=22.1
Q ss_pred CeEEEEEEccCCChHHHHHHHHhhh
Q 002308 176 GLHIISIVGMGGIGKTTLAQLACNH 200 (938)
Q Consensus 176 ~~~vv~i~G~~GiGKTtLa~~v~~~ 200 (938)
.+.+|.++|.+|+||||.+..++..
T Consensus 99 ~p~vI~~vG~~GsGKTTtaakLA~~ 123 (433)
T PRK10867 99 PPTVIMMVGLQGAGKTTTAGKLAKY 123 (433)
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHH
Confidence 4689999999999999999888874
No 364
>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional
Probab=95.20 E-value=0.052 Score=62.37 Aligned_cols=133 Identities=14% Similarity=0.046 Sum_probs=71.9
Q ss_pred CceecchhhHHHHHHHHhccCcccCCCeEEEEEEccCCChHHHHHHHHhhhhhhhcccCeEEEEEeCCCCCHHHHHHHHH
Q 002308 150 EEICGRVGERNALLSMLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNHVEVKREFDKTLWVCVSETFDEFRIAKAML 229 (938)
Q Consensus 150 ~~~vGr~~~~~~l~~~l~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 229 (938)
+.++|....+.++.+.+..-.. ....|.|+|..|+||+++|+.+.... .+ .-...+.+++..-. .+.+.
T Consensus 204 ~~~ig~s~~~~~~~~~~~~~A~----~~~pvlI~GE~GtGK~~lA~aiH~~s-~r-~~~pfv~inca~~~--~~~~e--- 272 (520)
T PRK10820 204 SQIVAVSPKMRQVVEQARKLAM----LDAPLLITGDTGTGKDLLAYACHLRS-PR-GKKPFLALNCASIP--DDVVE--- 272 (520)
T ss_pred cceeECCHHHHHHHHHHHHHhC----CCCCEEEECCCCccHHHHHHHHHHhC-CC-CCCCeEEeccccCC--HHHHH---
Confidence 4689998888877776653321 23458899999999999999976531 11 11233455555433 12222
Q ss_pred HHhcCCCCC-CCcHHHH-HHHHHHHhcCceEEEEEecCCCCCccChhHHHHhhhCCC-----------CCcEEEEEcCCh
Q 002308 230 EALTGSTSN-LNALQSL-LISIDESIAGKRFLLVLDDVWDGDYIKWEPFYRCLKKGL-----------HGSKILITTRKE 296 (938)
Q Consensus 230 ~~l~~~~~~-~~~~~~~-~~~l~~~l~~~~~LlVlDdv~~~~~~~~~~l~~~l~~~~-----------~gs~ilvTtr~~ 296 (938)
..+.+.... .....+. ...+. ....=.|+||+++..+......+...+..+. ...|||.||...
T Consensus 273 ~elFG~~~~~~~~~~~~~~g~~e---~a~~GtL~LdeI~~L~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~vRiI~st~~~ 349 (520)
T PRK10820 273 SELFGHAPGAYPNALEGKKGFFE---QANGGSVLLDEIGEMSPRMQAKLLRFLNDGTFRRVGEDHEVHVDVRVICATQKN 349 (520)
T ss_pred HHhcCCCCCCcCCcccCCCChhh---hcCCCEEEEeChhhCCHHHHHHHHHHHhcCCcccCCCCcceeeeeEEEEecCCC
Confidence 222221110 0000000 00011 1122347899998776555666777775531 134788877653
No 365
>PF08298 AAA_PrkA: PrkA AAA domain; InterPro: IPR013153 This is entry is found at the N terminus of PrkA proteins - bacterial and archaeal serine kinases approximately 630 residues in length. PrkA possesses the A-motif of nucleotide-binding proteins and exhibits distant homology to eukaryotic protein kinases []. Note that many of these are hypothetical.
Probab=95.17 E-value=0.025 Score=59.29 Aligned_cols=50 Identities=22% Similarity=0.309 Sum_probs=44.5
Q ss_pred CceecchhhHHHHHHHHhccCcccCCCeEEEEEEccCCChHHHHHHHHhh
Q 002308 150 EEICGRVGERNALLSMLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACN 199 (938)
Q Consensus 150 ~~~vGr~~~~~~l~~~l~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~v~~ 199 (938)
..|+|.++.++++++.+.+.+...+..-+++.+.|+.|.||||||..+.+
T Consensus 61 ~~~~G~~~~i~~lV~~fk~AA~g~~~~krIl~L~GPvg~GKSsl~~~Lk~ 110 (358)
T PF08298_consen 61 DEFYGMEETIERLVNYFKSAAQGLEERKRILLLLGPVGGGKSSLAELLKR 110 (358)
T ss_pred ccccCcHHHHHHHHHHHHHHHhccCccceEEEEECCCCCCHHHHHHHHHH
Confidence 57999999999999999877665567789999999999999999998877
No 366
>PTZ00301 uridine kinase; Provisional
Probab=95.16 E-value=0.03 Score=55.43 Aligned_cols=23 Identities=30% Similarity=0.505 Sum_probs=21.3
Q ss_pred eEEEEEEccCCChHHHHHHHHhh
Q 002308 177 LHIISIVGMGGIGKTTLAQLACN 199 (938)
Q Consensus 177 ~~vv~i~G~~GiGKTtLa~~v~~ 199 (938)
..+|+|.|.+|+||||||+.+..
T Consensus 3 ~~iIgIaG~SgSGKTTla~~l~~ 25 (210)
T PTZ00301 3 CTVIGISGASGSGKSSLSTNIVS 25 (210)
T ss_pred CEEEEEECCCcCCHHHHHHHHHH
Confidence 47899999999999999998877
No 367
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=95.12 E-value=0.096 Score=52.59 Aligned_cols=22 Identities=36% Similarity=0.462 Sum_probs=20.1
Q ss_pred EEEEEccCCChHHHHHHHHhhh
Q 002308 179 IISIVGMGGIGKTTLAQLACNH 200 (938)
Q Consensus 179 vv~i~G~~GiGKTtLa~~v~~~ 200 (938)
+|+|.|..|+||||+|+.+...
T Consensus 1 IigI~G~sGSGKTTla~~L~~~ 22 (220)
T cd02025 1 IIGIAGSVAVGKSTTARVLQAL 22 (220)
T ss_pred CEEeeCCCCCCHHHHHHHHHHH
Confidence 5899999999999999999874
No 368
>COG2842 Uncharacterized ATPase, putative transposase [General function prediction only]
Probab=95.12 E-value=0.54 Score=47.96 Aligned_cols=122 Identities=16% Similarity=0.160 Sum_probs=76.6
Q ss_pred CCCceecchhhHHHHHHHHhccCcccCCCeEEEEEEccCCChHHHHHHHHhhhhhhhcccCeEEEEEeCCCCCHHHHHHH
Q 002308 148 DEEEICGRVGERNALLSMLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNHVEVKREFDKTLWVCVSETFDEFRIAKA 227 (938)
Q Consensus 148 ~~~~~vGr~~~~~~l~~~l~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~ 227 (938)
..+.|+|-.... ++..++... ....+.+.++|+.|+|||+-++.+++. ....+.+..+..+....+...
T Consensus 70 ~~~~~l~tkt~r-~~~~~~~~A----~k~g~l~~vyg~~g~gKt~a~~~y~~s------~p~~~l~~~~p~~~a~~~i~~ 138 (297)
T COG2842 70 LAPDFLETKTVR-RIFFRTRPA----SKTGSLVVVYGYAGLGKTQAAKNYAPS------NPNALLIEADPSYTALVLILI 138 (297)
T ss_pred ccccccccchhH-hHhhhhhhh----hhcCceEEEeccccchhHHHHHhhccc------CccceeecCChhhHHHHHHHH
Confidence 345566654332 233333222 123458999999999999999999883 244555566777777777766
Q ss_pred HHHHhcCCCCCCCcHHHHHHHHHHHhcCceEEEEEecCCCCCccChhHHHHhhhC
Q 002308 228 MLEALTGSTSNLNALQSLLISIDESIAGKRFLLVLDDVWDGDYIKWEPFYRCLKK 282 (938)
Q Consensus 228 i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~~~~~~~l~~~l~~ 282 (938)
+......... .........+...+++..-++++|+........++.+......
T Consensus 139 i~~~~~~~~~--~~~~d~~~~~~~~l~~~~~~iivDEA~~L~~~ale~lr~i~d~ 191 (297)
T COG2842 139 ICAAAFGATD--GTINDLTERLMIRLRDTVRLIIVDEADRLPYRALEELRRIHDK 191 (297)
T ss_pred HHHHHhcccc--hhHHHHHHHHHHHHccCcceeeeehhhccChHHHHHHHHHHHh
Confidence 6666554332 2233444445556688888999999877665566666555444
No 369
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=95.10 E-value=0.088 Score=54.47 Aligned_cols=41 Identities=20% Similarity=0.313 Sum_probs=30.8
Q ss_pred CCeEEEEEEccCCChHHHHHHHHhhhhhhhcccCeEEEEEeCC
Q 002308 175 KGLHIISIVGMGGIGKTTLAQLACNHVEVKREFDKTLWVCVSE 217 (938)
Q Consensus 175 ~~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~ 217 (938)
+...++.|.|++|+|||++|.+++... .+ .=..++|++...
T Consensus 34 p~gs~~lI~G~pGtGKT~l~~qf~~~~-a~-~Ge~vlyis~Ee 74 (259)
T TIGR03878 34 PAYSVINITGVSDTGKSLMVEQFAVTQ-AS-RGNPVLFVTVES 74 (259)
T ss_pred ECCcEEEEEcCCCCCHHHHHHHHHHHH-Hh-CCCcEEEEEecC
Confidence 356899999999999999999987642 12 224678888764
No 370
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=95.08 E-value=0.062 Score=50.28 Aligned_cols=22 Identities=32% Similarity=0.573 Sum_probs=20.0
Q ss_pred EEEEEccCCChHHHHHHHHhhh
Q 002308 179 IISIVGMGGIGKTTLAQLACNH 200 (938)
Q Consensus 179 vv~i~G~~GiGKTtLa~~v~~~ 200 (938)
+|.|.|.+|+||||+|+.+...
T Consensus 1 ~i~i~G~~GsGKSTla~~L~~~ 22 (149)
T cd02027 1 VIWLTGLSGSGKSTIARALEEK 22 (149)
T ss_pred CEEEEcCCCCCHHHHHHHHHHH
Confidence 5789999999999999999884
No 371
>PF03969 AFG1_ATPase: AFG1-like ATPase; InterPro: IPR005654 ATPase family gene 1 (AFG1) ATPase is a 377 amino acid putative protein with an ATPase motif typical of the protein family including SEC18p PAS1, CDC48-VCP and TBP. AFG1 also has substantial homology to these proteins outside the ATPase domain []. This family of proteins contains a P-loop motif.; GO: 0005524 ATP binding
Probab=95.05 E-value=0.033 Score=60.14 Aligned_cols=102 Identities=19% Similarity=0.206 Sum_probs=58.5
Q ss_pred CeEEEEEEccCCChHHHHHHHHhhhhhh----hcccCeEEEEEeCCCCCHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHH
Q 002308 176 GLHIISIVGMGGIGKTTLAQLACNHVEV----KREFDKTLWVCVSETFDEFRIAKAMLEALTGSTSNLNALQSLLISIDE 251 (938)
Q Consensus 176 ~~~vv~i~G~~GiGKTtLa~~v~~~~~~----~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~ 251 (938)
.++=+.|||..|.|||.|.-.+|+...+ +-||. ..+.++-+.+.........+ ..+.+
T Consensus 61 ~~~GlYl~G~vG~GKT~Lmd~f~~~lp~~~k~R~HFh--------------~Fm~~vh~~l~~~~~~~~~l----~~va~ 122 (362)
T PF03969_consen 61 PPKGLYLWGPVGRGKTMLMDLFYDSLPIKRKRRVHFH--------------EFMLDVHSRLHQLRGQDDPL----PQVAD 122 (362)
T ss_pred CCceEEEECCCCCchhHHHHHHHHhCCcccccccccc--------------HHHHHHHHHHHHHhCCCccH----HHHHH
Confidence 5667899999999999999999986432 22331 33333333333211122222 23344
Q ss_pred HhcCceEEEEEecCCCCCccChhHHHHhhhC-CCCCcEEEEEcCCh
Q 002308 252 SIAGKRFLLVLDDVWDGDYIKWEPFYRCLKK-GLHGSKILITTRKE 296 (938)
Q Consensus 252 ~l~~~~~LlVlDdv~~~~~~~~~~l~~~l~~-~~~gs~ilvTtr~~ 296 (938)
.+.++..||.||.+.-.+..+-.-+...|.. ...|. |||+|.|.
T Consensus 123 ~l~~~~~lLcfDEF~V~DiaDAmil~rLf~~l~~~gv-vlVaTSN~ 167 (362)
T PF03969_consen 123 ELAKESRLLCFDEFQVTDIADAMILKRLFEALFKRGV-VLVATSNR 167 (362)
T ss_pred HHHhcCCEEEEeeeeccchhHHHHHHHHHHHHHHCCC-EEEecCCC
Confidence 5566777999999865544333333334433 24566 66666554
No 372
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=95.05 E-value=0.018 Score=45.57 Aligned_cols=22 Identities=41% Similarity=0.610 Sum_probs=19.8
Q ss_pred EEEEEccCCChHHHHHHHHhhh
Q 002308 179 IISIVGMGGIGKTTLAQLACNH 200 (938)
Q Consensus 179 vv~i~G~~GiGKTtLa~~v~~~ 200 (938)
+|+|.|.+|+||||+++.+...
T Consensus 1 ~i~i~G~~gsGKst~~~~l~~~ 22 (69)
T cd02019 1 IIAITGGSGSGKSTVAKKLAEQ 22 (69)
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999999874
No 373
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=95.00 E-value=0.025 Score=49.49 Aligned_cols=21 Identities=48% Similarity=0.575 Sum_probs=19.2
Q ss_pred EEEEccCCChHHHHHHHHhhh
Q 002308 180 ISIVGMGGIGKTTLAQLACNH 200 (938)
Q Consensus 180 v~i~G~~GiGKTtLa~~v~~~ 200 (938)
|.|+|++|+|||++|+.++.+
T Consensus 1 I~i~G~~G~GKS~l~~~l~~~ 21 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAKD 21 (107)
T ss_pred CEEECCCCCCHHHHHHHHHHH
Confidence 579999999999999998885
No 374
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=94.99 E-value=0.15 Score=52.94 Aligned_cols=89 Identities=19% Similarity=0.186 Sum_probs=47.3
Q ss_pred CeEEEEEEccCCChHHHHHHHHhhhhhhhcccCeEEEEEeCCCCCHH--HHHHHHHHHhcCCC---CCCCcH-HHHHHHH
Q 002308 176 GLHIISIVGMGGIGKTTLAQLACNHVEVKREFDKTLWVCVSETFDEF--RIAKAMLEALTGST---SNLNAL-QSLLISI 249 (938)
Q Consensus 176 ~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~--~~~~~i~~~l~~~~---~~~~~~-~~~~~~l 249 (938)
+.+++.++|++|+||||++..++... ...-..+.++++. .+... +-+...++..+... ....+. ......+
T Consensus 71 ~~~vi~l~G~~G~GKTTt~akLA~~l--~~~g~~V~li~~D-~~r~~a~~ql~~~~~~~~i~~~~~~~~~dp~~~~~~~l 147 (272)
T TIGR00064 71 KPNVILFVGVNGVGKTTTIAKLANKL--KKQGKSVLLAAGD-TFRAAAIEQLEEWAKRLGVDVIKQKEGADPAAVAFDAI 147 (272)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHH--HhcCCEEEEEeCC-CCCHHHHHHHHHHHHhCCeEEEeCCCCCCHHHHHHHHH
Confidence 46899999999999999999988743 2222345555543 23222 22333344433211 111111 2222334
Q ss_pred HHHhcCceEEEEEecCCC
Q 002308 250 DESIAGKRFLLVLDDVWD 267 (938)
Q Consensus 250 ~~~l~~~~~LlVlDdv~~ 267 (938)
.....+..=++|+|-.-.
T Consensus 148 ~~~~~~~~D~ViIDT~G~ 165 (272)
T TIGR00064 148 QKAKARNIDVVLIDTAGR 165 (272)
T ss_pred HHHHHCCCCEEEEeCCCC
Confidence 433334445788887644
No 375
>PRK05917 DNA polymerase III subunit delta'; Validated
Probab=94.98 E-value=0.77 Score=47.64 Aligned_cols=131 Identities=12% Similarity=0.060 Sum_probs=74.6
Q ss_pred HHHHHHHHhccCcccCCCeEEEEEEccCCChHHHHHHHHhhhhhhhc-----------ccCeEEEEEeCCCCCHHHHHHH
Q 002308 159 RNALLSMLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNHVEVKR-----------EFDKTLWVCVSETFDEFRIAKA 227 (938)
Q Consensus 159 ~~~l~~~l~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~-----------~f~~~~wv~~~~~~~~~~~~~~ 227 (938)
-+++...+... .-.+-..++|+.|+||+++|..++...--.. ..+-..|+.-..
T Consensus 6 ~~~L~~~i~~~-----rl~HAyLf~G~~G~Gk~~lA~~~A~~llC~~~~~~c~~~~~~~HPD~~~i~p~~---------- 70 (290)
T PRK05917 6 WEALIQRVRDQ-----KVPSAIILHGQDLSNLSARAYELASLILKETSPEAAYKISQKIHPDIHEFSPQG---------- 70 (290)
T ss_pred HHHHHHHHHcC-----CcCeeEeeECCCCCcHHHHHHHHHHHHhCCCCccHHHHHhcCCCCCEEEEecCC----------
Confidence 34566666542 2456778999999999999998887421100 011111111000
Q ss_pred HHHHhcCCCCCCCcHHHHHHHHHHHh-----cCceEEEEEecCCCCCccChhHHHHhhhCCCCCcEEEEEcCC-hhhhhh
Q 002308 228 MLEALTGSTSNLNALQSLLISIDESI-----AGKRFLLVLDDVWDGDYIKWEPFYRCLKKGLHGSKILITTRK-ESIVSM 301 (938)
Q Consensus 228 i~~~l~~~~~~~~~~~~~~~~l~~~l-----~~~~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtr~-~~v~~~ 301 (938)
......+++.. .+.+.+ .+++=++|+|+++......+..++..+..-..++.+|++|.+ ..+...
T Consensus 71 --------~~~~I~idqiR-~l~~~~~~~p~e~~~kv~ii~~ad~mt~~AaNaLLK~LEEPp~~~~fiL~~~~~~~ll~T 141 (290)
T PRK05917 71 --------KGRLHSIETPR-AIKKQIWIHPYESPYKIYIIHEADRMTLDAISAFLKVLEDPPQHGVIILTSAKPQRLPPT 141 (290)
T ss_pred --------CCCcCcHHHHH-HHHHHHhhCccCCCceEEEEechhhcCHHHHHHHHHHhhcCCCCeEEEEEeCChhhCcHH
Confidence 00011233332 232222 245558899999887777888888888876667766665555 444433
Q ss_pred -hcCCceEeCCCC
Q 002308 302 -MRSTDIISIEEL 313 (938)
Q Consensus 302 -~~~~~~~~l~~L 313 (938)
.+....+.+.++
T Consensus 142 I~SRcq~~~~~~~ 154 (290)
T PRK05917 142 IRSRSLSIHIPME 154 (290)
T ss_pred HHhcceEEEccch
Confidence 344567777665
No 376
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=94.95 E-value=0.3 Score=47.69 Aligned_cols=64 Identities=16% Similarity=0.154 Sum_probs=39.0
Q ss_pred HHHHHHHHHHhcCceEEEEEecCCCC-CccChhHHHHhhhC-CCCCcEEEEEcCChhhhhhhcCCc
Q 002308 243 QSLLISIDESIAGKRFLLVLDDVWDG-DYIKWEPFYRCLKK-GLHGSKILITTRKESIVSMMRSTD 306 (938)
Q Consensus 243 ~~~~~~l~~~l~~~~~LlVlDdv~~~-~~~~~~~l~~~l~~-~~~gs~ilvTtr~~~v~~~~~~~~ 306 (938)
+.....+.+.+-=++-+.|||.-++. |.+....+...+.. ..+|+-++|.|-...++.......
T Consensus 149 EkKR~EilQ~~~lePkl~ILDE~DSGLDIdalk~V~~~i~~lr~~~~~~liITHy~rll~~i~pD~ 214 (251)
T COG0396 149 EKKRNEILQLLLLEPKLAILDEPDSGLDIDALKIVAEGINALREEGRGVLIITHYQRLLDYIKPDK 214 (251)
T ss_pred hHHHHHHHHHHhcCCCEEEecCCCcCccHHHHHHHHHHHHHHhcCCCeEEEEecHHHHHhhcCCCE
Confidence 33444455555556779999998763 33334444444443 235666888888888888765443
No 377
>PRK06547 hypothetical protein; Provisional
Probab=94.90 E-value=0.038 Score=52.94 Aligned_cols=26 Identities=38% Similarity=0.466 Sum_probs=23.2
Q ss_pred CCeEEEEEEccCCChHHHHHHHHhhh
Q 002308 175 KGLHIISIVGMGGIGKTTLAQLACNH 200 (938)
Q Consensus 175 ~~~~vv~i~G~~GiGKTtLa~~v~~~ 200 (938)
....+|+|.|++|+||||+|+.+...
T Consensus 13 ~~~~~i~i~G~~GsGKTt~a~~l~~~ 38 (172)
T PRK06547 13 GGMITVLIDGRSGSGKTTLAGALAAR 38 (172)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 46789999999999999999999874
No 378
>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=94.88 E-value=0.089 Score=52.05 Aligned_cols=120 Identities=18% Similarity=0.180 Sum_probs=61.0
Q ss_pred eEEEEEEccCCChHHHHHHHHhhhhhhhcccCeEEEEEeCCCCCHHHHHHHHHHHhcCCCCCC---CcHHHHHHHHHHHh
Q 002308 177 LHIISIVGMGGIGKTTLAQLACNHVEVKREFDKTLWVCVSETFDEFRIAKAMLEALTGSTSNL---NALQSLLISIDESI 253 (938)
Q Consensus 177 ~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~---~~~~~~~~~l~~~l 253 (938)
.+++.|.|+.|.||||+.+.++...- ..+. -.+|.+.. .. -.++..|...+...+... .....-...+...+
T Consensus 29 ~~~~~l~G~n~~GKstll~~i~~~~~-la~~--G~~vpa~~-~~-l~~~d~I~~~~~~~d~~~~~~S~fs~e~~~~~~il 103 (204)
T cd03282 29 SRFHIITGPNMSGKSTYLKQIALLAI-MAQI--GCFVPAEY-AT-LPIFNRLLSRLSNDDSMERNLSTFASEMSETAYIL 103 (204)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHH-HHHc--CCCcchhh-cC-ccChhheeEecCCccccchhhhHHHHHHHHHHHHH
Confidence 47899999999999999998876421 1111 11222111 11 122333333333221111 11111111122222
Q ss_pred --cCceEEEEEecCCCCC-ccC----hhHHHHhhhCCCCCcEEEEEcCChhhhhhhc
Q 002308 254 --AGKRFLLVLDDVWDGD-YIK----WEPFYRCLKKGLHGSKILITTRKESIVSMMR 303 (938)
Q Consensus 254 --~~~~~LlVlDdv~~~~-~~~----~~~l~~~l~~~~~gs~ilvTtr~~~v~~~~~ 303 (938)
..++-|+++|...... ..+ ...+...+.. .|..+|+||-..+++....
T Consensus 104 ~~~~~~~lvllDE~~~gt~~~~~~~l~~~il~~l~~--~~~~~i~~TH~~~l~~~~~ 158 (204)
T cd03282 104 DYADGDSLVLIDELGRGTSSADGFAISLAILECLIK--KESTVFFATHFRDIAAILG 158 (204)
T ss_pred HhcCCCcEEEeccccCCCCHHHHHHHHHHHHHHHHh--cCCEEEEECChHHHHHHhh
Confidence 3567899999974421 111 1122333333 3778999999988776654
No 379
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.87 E-value=0.079 Score=51.43 Aligned_cols=122 Identities=16% Similarity=0.126 Sum_probs=60.4
Q ss_pred CeEEEEEEccCCChHHHHHHHHhhhhhhhcccCeEEEEEeCCCCCHHHHHHHHHHHhc--CCCC----C----------C
Q 002308 176 GLHIISIVGMGGIGKTTLAQLACNHVEVKREFDKTLWVCVSETFDEFRIAKAMLEALT--GSTS----N----------L 239 (938)
Q Consensus 176 ~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~--~~~~----~----------~ 239 (938)
...+++|.|+.|.|||||++.++... ......+.+.-........-.....+.+. .+.. . .
T Consensus 25 ~G~~~~i~G~nGsGKSTLl~~l~G~~---~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~~~l~~~l 101 (178)
T cd03229 25 AGEIVALLGPSGSGKSTLLRCIAGLE---EPDSGSILIDGEDLTDLEDELPPLRRRIGMVFQDFALFPHLTVLENIALGL 101 (178)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC---CCCceEEEECCEEccccchhHHHHhhcEEEEecCCccCCCCCHHHheeecC
Confidence 34689999999999999999998632 12233333321110000000001111111 0000 0 1
Q ss_pred CcHHHHHHHHHHHhcCceEEEEEecCCC-CCccChhHHHHhhhCC-CC-CcEEEEEcCChhhhh
Q 002308 240 NALQSLLISIDESIAGKRFLLVLDDVWD-GDYIKWEPFYRCLKKG-LH-GSKILITTRKESIVS 300 (938)
Q Consensus 240 ~~~~~~~~~l~~~l~~~~~LlVlDdv~~-~~~~~~~~l~~~l~~~-~~-gs~ilvTtr~~~v~~ 300 (938)
+..+...-.+.+.+..++=++++|+--. .|......+...+... .. |..||++|.+.....
T Consensus 102 S~G~~qr~~la~al~~~p~llilDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~ 165 (178)
T cd03229 102 SGGQQQRVALARALAMDPDVLLLDEPTSALDPITRREVRALLKSLQAQLGITVVLVTHDLDEAA 165 (178)
T ss_pred CHHHHHHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHH
Confidence 1122223334556666777899998643 2333334454544432 22 566888887765544
No 380
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=94.84 E-value=0.05 Score=55.08 Aligned_cols=63 Identities=27% Similarity=0.274 Sum_probs=44.8
Q ss_pred HHHHHHHhccCcccCCCeEEEEEEccCCChHHHHHHHHhhhhhhhcccCeEEEEEeCCCCCHHHHHH
Q 002308 160 NALLSMLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNHVEVKREFDKTLWVCVSETFDEFRIAK 226 (938)
Q Consensus 160 ~~l~~~l~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~ 226 (938)
.+++..+... .....+|+|.|.||+|||||..++......+++=-.++-|+-|.+++--.++-
T Consensus 38 ~~ll~~l~p~----tG~a~viGITG~PGaGKSTli~~L~~~l~~~G~rVaVlAVDPSSp~TGGsiLG 100 (323)
T COG1703 38 RELLRALYPR----TGNAHVIGITGVPGAGKSTLIEALGRELRERGHRVAVLAVDPSSPFTGGSILG 100 (323)
T ss_pred HHHHHHHhhc----CCCCcEEEecCCCCCchHHHHHHHHHHHHHCCcEEEEEEECCCCCCCCccccc
Confidence 4566666554 34778999999999999999999888654444445566666677776555543
No 381
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=94.83 E-value=0.44 Score=46.14 Aligned_cols=124 Identities=18% Similarity=0.184 Sum_probs=69.8
Q ss_pred CeEEEEEEccCCChHHHHHHHHhhhhhhhcccCeEEEEEeC-------------------CCC-----------------
Q 002308 176 GLHIISIVGMGGIGKTTLAQLACNHVEVKREFDKTLWVCVS-------------------ETF----------------- 219 (938)
Q Consensus 176 ~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~-------------------~~~----------------- 219 (938)
...|++|.|+.|+|||||.+.+..-+... +..+|+.-. +.|
T Consensus 27 ~Gevv~iiGpSGSGKSTlLRclN~LE~~~---~G~I~i~g~~~~~~~~~~~~R~~vGmVFQ~fnLFPHlTvleNv~lap~ 103 (240)
T COG1126 27 KGEVVVIIGPSGSGKSTLLRCLNGLEEPD---SGSITVDGEDVGDKKDILKLRRKVGMVFQQFNLFPHLTVLENVTLAPV 103 (240)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHCCcCCC---CceEEECCEeccchhhHHHHHHhcCeecccccccccchHHHHHHhhhH
Confidence 45699999999999999999887633222 334444321 111
Q ss_pred --------CHHHHHHHHHHHhcCC------CCCCCcHHHHHHHHHHHhcCceEEEEEecCCCCC-ccChhHHHHhhhC-C
Q 002308 220 --------DEFRIAKAMLEALTGS------TSNLNALQSLLISIDESIAGKRFLLVLDDVWDGD-YIKWEPFYRCLKK-G 283 (938)
Q Consensus 220 --------~~~~~~~~i~~~l~~~------~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~-~~~~~~l~~~l~~-~ 283 (938)
..++...++++.++.. +...+..++-.-.|.+.|.=++=++.+|...+.= ..-..++...+.. .
T Consensus 104 ~v~~~~k~eA~~~A~~lL~~VGL~~ka~~yP~qLSGGQqQRVAIARALaM~P~vmLFDEPTSALDPElv~EVL~vm~~LA 183 (240)
T COG1126 104 KVKKLSKAEAREKALELLEKVGLADKADAYPAQLSGGQQQRVAIARALAMDPKVMLFDEPTSALDPELVGEVLDVMKDLA 183 (240)
T ss_pred HHcCCCHHHHHHHHHHHHHHcCchhhhhhCccccCcHHHHHHHHHHHHcCCCCEEeecCCcccCCHHHHHHHHHHHHHHH
Confidence 1122333344444322 1223344444556777777777788999986542 2222333333333 2
Q ss_pred CCCcEEEEEcCChhhhhhh
Q 002308 284 LHGSKILITTRKESIVSMM 302 (938)
Q Consensus 284 ~~gs~ilvTtr~~~v~~~~ 302 (938)
..|-.+|+.|-....|..+
T Consensus 184 ~eGmTMivVTHEM~FAr~V 202 (240)
T COG1126 184 EEGMTMIIVTHEMGFAREV 202 (240)
T ss_pred HcCCeEEEEechhHHHHHh
Confidence 4566677777776655553
No 382
>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]
Probab=94.83 E-value=0.14 Score=50.85 Aligned_cols=90 Identities=19% Similarity=0.260 Sum_probs=49.0
Q ss_pred CCCeEEEEEEccCCChHHHHHHHHhhhhhhhcccCeEEEEE-------eCCCCCHHHH--HHHHHHHhcCCCCC-C----
Q 002308 174 QKGLHIISIVGMGGIGKTTLAQLACNHVEVKREFDKTLWVC-------VSETFDEFRI--AKAMLEALTGSTSN-L---- 239 (938)
Q Consensus 174 ~~~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~-------~~~~~~~~~~--~~~i~~~l~~~~~~-~---- 239 (938)
...+..|.++||+|+||||..+.++.+...+..-.+++=++ ...+.++++. +++..++....+.+ +
T Consensus 16 ~~~p~~ilVvGMAGSGKTTF~QrL~~hl~~~~~ppYviNLDPAv~~vpy~aniDIRDtVkYkEvMkqY~LGPNGgI~TsL 95 (366)
T KOG1532|consen 16 IQRPVIILVVGMAGSGKTTFMQRLNSHLHAKKTPPYVINLDPAVRNVPYPANIDIRDTVKYKEVMKQYQLGPNGGIVTSL 95 (366)
T ss_pred ccCCcEEEEEecCCCCchhHHHHHHHHHhhccCCCeEEeCCHHHhcCCCccCCchhhhhhHHHHHHHhCCCCCcchhhhH
Confidence 34567888999999999999999988533222212222221 1233355543 46666666543322 1
Q ss_pred ----CcHHHHHHHHHHHhcCceEEEEEec
Q 002308 240 ----NALQSLLISIDESIAGKRFLLVLDD 264 (938)
Q Consensus 240 ----~~~~~~~~~l~~~l~~~~~LlVlDd 264 (938)
...++....+.+....-+|. ++|-
T Consensus 96 NLF~tk~dqv~~~iek~~~~~~~~-liDT 123 (366)
T KOG1532|consen 96 NLFATKFDQVIELIEKRAEEFDYV-LIDT 123 (366)
T ss_pred HHHHHHHHHHHHHHHHhhcccCEE-EEcC
Confidence 23444555555544443444 3453
No 383
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=94.78 E-value=0.027 Score=56.25 Aligned_cols=26 Identities=38% Similarity=0.364 Sum_probs=23.1
Q ss_pred CCeEEEEEEccCCChHHHHHHHHhhh
Q 002308 175 KGLHIISIVGMGGIGKTTLAQLACNH 200 (938)
Q Consensus 175 ~~~~vv~i~G~~GiGKTtLa~~v~~~ 200 (938)
+...+|+|.|++|+||||||+.++..
T Consensus 4 ~~g~vi~I~G~sGsGKSTl~~~l~~~ 29 (207)
T TIGR00235 4 PKGIIIGIGGGSGSGKTTVARKIYEQ 29 (207)
T ss_pred CCeEEEEEECCCCCCHHHHHHHHHHH
Confidence 35689999999999999999999874
No 384
>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX). A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.
Probab=94.78 E-value=0.15 Score=55.90 Aligned_cols=51 Identities=24% Similarity=0.292 Sum_probs=35.6
Q ss_pred CCceecchhhHHHHHHHHh-------c--cCcc---cCCCeEEEEEEccCCChHHHHHHHHhh
Q 002308 149 EEEICGRVGERNALLSMLL-------C--ESSE---QQKGLHIISIVGMGGIGKTTLAQLACN 199 (938)
Q Consensus 149 ~~~~vGr~~~~~~l~~~l~-------~--~~~~---~~~~~~vv~i~G~~GiGKTtLa~~v~~ 199 (938)
...++|.++..+.+...+. . .... .......+.++|++|+|||++|+.++.
T Consensus 76 ~~~ViGQe~A~~~l~~av~~h~~~~~~~~~~~~~~~~~~~~~~iLL~GP~GsGKT~lAraLA~ 138 (413)
T TIGR00382 76 DEYVIGQEQAKKVLSVAVYNHYKRLNFEKNKKSDNGVELSKSNILLIGPTGSGKTLLAQTLAR 138 (413)
T ss_pred cceecCHHHHHHHHHHHHHHHHhhhccccccccccccccCCceEEEECCCCcCHHHHHHHHHH
Confidence 3458999998888876552 1 0000 001135799999999999999999986
No 385
>PRK05973 replicative DNA helicase; Provisional
Probab=94.77 E-value=0.15 Score=51.26 Aligned_cols=50 Identities=16% Similarity=0.113 Sum_probs=34.1
Q ss_pred CeEEEEEEccCCChHHHHHHHHhhhhhhhcccCeEEEEEeCCCCCHHHHHHHHH
Q 002308 176 GLHIISIVGMGGIGKTTLAQLACNHVEVKREFDKTLWVCVSETFDEFRIAKAML 229 (938)
Q Consensus 176 ~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 229 (938)
...++.|.|.+|+|||++|.+++... .+. =..++|++.... ..++...+.
T Consensus 63 ~Gsl~LIaG~PG~GKT~lalqfa~~~-a~~-Ge~vlyfSlEes--~~~i~~R~~ 112 (237)
T PRK05973 63 PGDLVLLGARPGHGKTLLGLELAVEA-MKS-GRTGVFFTLEYT--EQDVRDRLR 112 (237)
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHHHH-Hhc-CCeEEEEEEeCC--HHHHHHHHH
Confidence 45689999999999999999987743 222 245667766553 455555543
No 386
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.75 E-value=0.084 Score=50.05 Aligned_cols=119 Identities=18% Similarity=0.224 Sum_probs=62.7
Q ss_pred eEEEEEEccCCChHHHHHHHHhhhhhhhcccCeEEEEEeCCCCCHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHhcCc
Q 002308 177 LHIISIVGMGGIGKTTLAQLACNHVEVKREFDKTLWVCVSETFDEFRIAKAMLEALTGSTSNLNALQSLLISIDESIAGK 256 (938)
Q Consensus 177 ~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~ 256 (938)
..+++|.|..|.|||||++.++... ......+++......... .......+.... +.+..+...-.+...+...
T Consensus 25 g~~~~i~G~nGsGKStll~~l~g~~---~~~~G~i~~~~~~~~~~~--~~~~~~~i~~~~-qlS~G~~~r~~l~~~l~~~ 98 (157)
T cd00267 25 GEIVALVGPNGSGKSTLLRAIAGLL---KPTSGEILIDGKDIAKLP--LEELRRRIGYVP-QLSGGQRQRVALARALLLN 98 (157)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC---CCCccEEEECCEEcccCC--HHHHHhceEEEe-eCCHHHHHHHHHHHHHhcC
Confidence 3689999999999999999998742 223444554322111100 011111111100 1222333333455556666
Q ss_pred eEEEEEecCCCC-CccChhHHHHhhhCC-CCCcEEEEEcCChhhhhh
Q 002308 257 RFLLVLDDVWDG-DYIKWEPFYRCLKKG-LHGSKILITTRKESIVSM 301 (938)
Q Consensus 257 ~~LlVlDdv~~~-~~~~~~~l~~~l~~~-~~gs~ilvTtr~~~v~~~ 301 (938)
+-++++|+.... |......+...+... ..+..++++|.+......
T Consensus 99 ~~i~ilDEp~~~lD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~ 145 (157)
T cd00267 99 PDLLLLDEPTSGLDPASRERLLELLRELAEEGRTVIIVTHDPELAEL 145 (157)
T ss_pred CCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHH
Confidence 789999997532 222333444444321 124568888877655544
No 387
>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR. At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR.
Probab=94.74 E-value=0.075 Score=60.58 Aligned_cols=132 Identities=15% Similarity=0.139 Sum_probs=72.7
Q ss_pred CceecchhhHHHHHHHHhccCcccCCCeEEEEEEccCCChHHHHHHHHhhhhhhhcccCeEEEEEeCCCCCHHHHHHHHH
Q 002308 150 EEICGRVGERNALLSMLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNHVEVKREFDKTLWVCVSETFDEFRIAKAML 229 (938)
Q Consensus 150 ~~~vGr~~~~~~l~~~l~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 229 (938)
..++|....++++.+.+..-. .....|.|.|..|+||+.+|+.+++... +.. ...+-|++..-. +..+ -
T Consensus 212 ~~iiG~S~~m~~~~~~i~~~A----~~~~pVLI~GE~GTGKe~lA~~IH~~S~-r~~-~pfv~inC~~l~--e~ll---e 280 (526)
T TIGR02329 212 DDLLGASAPMEQVRALVRLYA----RSDATVLILGESGTGKELVAQAIHQLSG-RRD-FPFVAINCGAIA--ESLL---E 280 (526)
T ss_pred hheeeCCHHHHHHHHHHHHHh----CCCCcEEEECCCCcCHHHHHHHHHHhcC-cCC-CCEEEeccccCC--hhHH---H
Confidence 458999988888888775432 1345789999999999999999987421 111 223344444322 1222 2
Q ss_pred HHhcCCCCCC-CcHH--HHHHHHHHHhcCceEEEEEecCCCCCccChhHHHHhhhCCC-----------CCcEEEEEcCC
Q 002308 230 EALTGSTSNL-NALQ--SLLISIDESIAGKRFLLVLDDVWDGDYIKWEPFYRCLKKGL-----------HGSKILITTRK 295 (938)
Q Consensus 230 ~~l~~~~~~~-~~~~--~~~~~l~~~l~~~~~LlVlDdv~~~~~~~~~~l~~~l~~~~-----------~gs~ilvTtr~ 295 (938)
..+.+...+. .... .....+. ....=-|+||++...+......+...+.... ...|||.||..
T Consensus 281 seLFG~~~gaftga~~~~~~Gl~e---~A~gGTLfLdeI~~Lp~~~Q~~Ll~~L~~~~~~r~g~~~~~~~dvRiIaat~~ 357 (526)
T TIGR02329 281 AELFGYEEGAFTGARRGGRTGLIE---AAHRGTLFLDEIGEMPLPLQTRLLRVLEEREVVRVGGTEPVPVDVRVVAATHC 357 (526)
T ss_pred HHhcCCcccccccccccccccchh---hcCCceEEecChHhCCHHHHHHHHHHHhcCcEEecCCCceeeecceEEeccCC
Confidence 2333221111 0000 0000010 1122358899998776555666777765432 12378877754
No 388
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=94.72 E-value=0.38 Score=45.91 Aligned_cols=23 Identities=35% Similarity=0.504 Sum_probs=20.3
Q ss_pred EEEEEEccCCChHHHHHHHHhhh
Q 002308 178 HIISIVGMGGIGKTTLAQLACNH 200 (938)
Q Consensus 178 ~vv~i~G~~GiGKTtLa~~v~~~ 200 (938)
+.|.+.|.+|+||||+|++.+.-
T Consensus 2 pLiIlTGyPgsGKTtfakeLak~ 24 (261)
T COG4088 2 PLIILTGYPGSGKTTFAKELAKE 24 (261)
T ss_pred ceEEEecCCCCCchHHHHHHHHH
Confidence 35788999999999999999884
No 389
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=94.71 E-value=0.097 Score=56.87 Aligned_cols=83 Identities=30% Similarity=0.313 Sum_probs=48.6
Q ss_pred CeEEEEEEccCCChHHHHHHHHhhhhhhhcccCeEEEEEeCCCCCHHHHHHHHHHHhcCCCCC-----CCcHHHHHHHHH
Q 002308 176 GLHIISIVGMGGIGKTTLAQLACNHVEVKREFDKTLWVCVSETFDEFRIAKAMLEALTGSTSN-----LNALQSLLISID 250 (938)
Q Consensus 176 ~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~-----~~~~~~~~~~l~ 250 (938)
...++.|.|.+|+|||||+.+++.. ....-..++|++..+. ...+. .-++.++..... ..+.+.+.+.+.
T Consensus 81 ~GslvLI~G~pG~GKStLllq~a~~--~a~~g~~VlYvs~EEs--~~qi~-~Ra~rlg~~~~~l~l~~e~~le~I~~~i~ 155 (372)
T cd01121 81 PGSVILIGGDPGIGKSTLLLQVAAR--LAKRGGKVLYVSGEES--PEQIK-LRADRLGISTENLYLLAETNLEDILASIE 155 (372)
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHH--HHhcCCeEEEEECCcC--HHHHH-HHHHHcCCCcccEEEEccCcHHHHHHHHH
Confidence 4579999999999999999999874 2222346778876543 33322 223344432111 123344433332
Q ss_pred HHhcCceEEEEEecCC
Q 002308 251 ESIAGKRFLLVLDDVW 266 (938)
Q Consensus 251 ~~l~~~~~LlVlDdv~ 266 (938)
..+.-++|+|.+.
T Consensus 156 ---~~~~~lVVIDSIq 168 (372)
T cd01121 156 ---ELKPDLVIIDSIQ 168 (372)
T ss_pred ---hcCCcEEEEcchH
Confidence 2355678888873
No 390
>PRK05480 uridine/cytidine kinase; Provisional
Probab=94.70 E-value=0.028 Score=56.26 Aligned_cols=25 Identities=40% Similarity=0.442 Sum_probs=22.8
Q ss_pred CeEEEEEEccCCChHHHHHHHHhhh
Q 002308 176 GLHIISIVGMGGIGKTTLAQLACNH 200 (938)
Q Consensus 176 ~~~vv~i~G~~GiGKTtLa~~v~~~ 200 (938)
...+|+|.|.+|+||||||+.+...
T Consensus 5 ~~~iI~I~G~sGsGKTTl~~~l~~~ 29 (209)
T PRK05480 5 KPIIIGIAGGSGSGKTTVASTIYEE 29 (209)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHH
Confidence 5689999999999999999999874
No 391
>PF13479 AAA_24: AAA domain
Probab=94.68 E-value=0.11 Score=51.91 Aligned_cols=32 Identities=38% Similarity=0.349 Sum_probs=24.9
Q ss_pred eEEEEEEccCCChHHHHHHHHhhhhhhhcccCeEEEEEeCCC
Q 002308 177 LHIISIVGMGGIGKTTLAQLACNHVEVKREFDKTLWVCVSET 218 (938)
Q Consensus 177 ~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~ 218 (938)
...+.|+|.+|+||||+|..+ +..+++.....
T Consensus 3 ~~~~lIyG~~G~GKTt~a~~~----------~k~l~id~E~g 34 (213)
T PF13479_consen 3 PIKILIYGPPGSGKTTLAASL----------PKPLFIDTENG 34 (213)
T ss_pred ceEEEEECCCCCCHHHHHHhC----------CCeEEEEeCCC
Confidence 356899999999999999876 44666766543
No 392
>PF00006 ATP-synt_ab: ATP synthase alpha/beta family, nucleotide-binding domain This Pfam entry corresponds to chains a,b,c,d,e and f; InterPro: IPR000194 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The F-ATPases (or F1F0-ATPases), V-ATPases (or V1V0-ATPases) and A-ATPases (or A1A0-ATPases) are composed of two linked complexes: the F1, V1 or A1 complex contains the catalytic core that synthesizes/hydrolyses ATP, and the F0, V0 or A0 complex that forms the membrane-spanning pore. The F-, V- and A-ATPases all contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, ]. In F-ATPases, there are three copies each of the alpha and beta subunits that form the catalytic core of the F1 complex, while the remaining F1 subunits (gamma, delta, epsilon) form part of the stalks. There is a substrate-binding site on each of the alpha and beta subunits, those on the beta subunits being catalytic, while those on the alpha subunits are regulatory. The alpha and beta subunits form a cylinder that is attached to the central stalk. The alpha/beta subunits undergo a sequence of conformational changes leading to the formation of ATP from ADP, which are induced by the rotation of the gamma subunit, itself driven by the movement of protons through the F0 complex C subunit []. In V- and A-ATPases, the alpha/A and beta/B subunits of the V1 or A1 complex are homologous to the alpha and beta subunits in the F1 complex of F-ATPases, except that the alpha subunit is catalytic and the beta subunit is regulatory. The structure of the alpha and beta subunits is almost identical. Each subunit consists of a N-terminal beta-barrel, a central domain containing the nucleotide-binding site and a C-terminal alpha bundle domain []. This entry represents the central domain. It is found in the alpha and beta subunits from F1, V1, and A1 complexes, as well as in flagellar ATPase and the termination factor Rho. ; GO: 0005524 ATP binding; PDB: 3OEE_N 2HLD_W 3FKS_N 3OE7_O 3OFN_M 2XOK_D 3OEH_V 2WPD_F 3ZRY_D 2OBL_A ....
Probab=94.66 E-value=0.092 Score=52.07 Aligned_cols=84 Identities=25% Similarity=0.340 Sum_probs=50.3
Q ss_pred EEEEEEccCCChHHHHHHHHhhhhhhhcccCeEEEEEeCCC-CCHHHHHHHHHHHhcC-------CCCCCCcHHHH----
Q 002308 178 HIISIVGMGGIGKTTLAQLACNHVEVKREFDKTLWVCVSET-FDEFRIAKAMLEALTG-------STSNLNALQSL---- 245 (938)
Q Consensus 178 ~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~-~~~~~~~~~i~~~l~~-------~~~~~~~~~~~---- 245 (938)
..++|.|.+|+|||+|+.++.+... -+.++++.+++. ..+.++.+++...-.. ...+.......
T Consensus 16 qr~~I~g~~g~GKt~Ll~~i~~~~~----~d~~V~~~iGer~~Ev~~~~~~~~~~~~~~~t~vv~~t~~~~~~~r~~~~~ 91 (215)
T PF00006_consen 16 QRIGIFGGAGVGKTVLLQEIANNQD----ADVVVYALIGERGREVTEFIEELKGEGALERTVVVAATSDEPPAARYRAPY 91 (215)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHCT----TTEEEEEEESECHHHHHHHHHHHHHTTGGGGEEEEEEETTS-HHHHHHHHH
T ss_pred CEEEEEcCcccccchhhHHHHhccc----ccceeeeeccccchhHHHHHHHHhhcccccccccccccchhhHHHHhhhhc
Confidence 5689999999999999999988531 244578877754 3445555555433110 11111111111
Q ss_pred -HHHHHHHh--cCceEEEEEecC
Q 002308 246 -LISIDESI--AGKRFLLVLDDV 265 (938)
Q Consensus 246 -~~~l~~~l--~~~~~LlVlDdv 265 (938)
.-.+.+++ +++++|+++||+
T Consensus 92 ~a~t~AEyfrd~G~dVlli~Dsl 114 (215)
T PF00006_consen 92 TALTIAEYFRDQGKDVLLIIDSL 114 (215)
T ss_dssp HHHHHHHHHHHTTSEEEEEEETH
T ss_pred cchhhhHHHhhcCCceeehhhhh
Confidence 11122333 589999999998
No 393
>PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C.
Probab=94.66 E-value=0.17 Score=49.92 Aligned_cols=41 Identities=29% Similarity=0.492 Sum_probs=28.4
Q ss_pred EEEEEEccCCChHHHHHHHHhhhhhhhccc--------CeEEEEEeCCC
Q 002308 178 HIISIVGMGGIGKTTLAQLACNHVEVKREF--------DKTLWVCVSET 218 (938)
Q Consensus 178 ~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f--------~~~~wv~~~~~ 218 (938)
.++.|.|++|+|||+++..++........| ..++|++....
T Consensus 33 ~l~~i~g~~g~GKT~~~~~l~~~~~~g~~~~g~~~~~~~~Vl~i~~E~~ 81 (193)
T PF13481_consen 33 ELTLIAGPPGSGKTTLALQLAAALATGRPFLGELPPRPGRVLYISLEDS 81 (193)
T ss_dssp SEEEEEECSTSSHHHHHHHHHHHHHT---TT---------EEEEESSS-
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHHHhCCccCCcccccCceEEEEeccCC
Confidence 478999999999999999988864433223 36778876664
No 394
>PTZ00088 adenylate kinase 1; Provisional
Probab=94.66 E-value=0.035 Score=55.88 Aligned_cols=22 Identities=32% Similarity=0.579 Sum_probs=19.7
Q ss_pred EEEEEccCCChHHHHHHHHhhh
Q 002308 179 IISIVGMGGIGKTTLAQLACNH 200 (938)
Q Consensus 179 vv~i~G~~GiGKTtLa~~v~~~ 200 (938)
.|.|.|++|+||||+|+.++..
T Consensus 8 rIvl~G~PGsGK~T~a~~La~~ 29 (229)
T PTZ00088 8 KIVLFGAPGVGKGTFAEILSKK 29 (229)
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 3899999999999999998773
No 395
>PRK06002 fliI flagellum-specific ATP synthase; Validated
Probab=94.65 E-value=0.15 Score=56.18 Aligned_cols=88 Identities=19% Similarity=0.162 Sum_probs=49.5
Q ss_pred CeEEEEEEccCCChHHHHHHHHhhhhhhhcccCeEEEEEeCCCCCHHHHHHHHHHHhcCC------CCCCCcHHH-----
Q 002308 176 GLHIISIVGMGGIGKTTLAQLACNHVEVKREFDKTLWVCVSETFDEFRIAKAMLEALTGS------TSNLNALQS----- 244 (938)
Q Consensus 176 ~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~------~~~~~~~~~----- 244 (938)
....++|+|..|+|||||++.++... .....++++......++.++....+...... ..+......
T Consensus 164 ~Gqri~I~G~SGsGKTTLL~~Ia~l~---~pd~gvv~liGergrev~e~~~~~l~~~r~rtI~vV~qsd~~~~~r~~~~~ 240 (450)
T PRK06002 164 AGQRIGIFAGSGVGKSTLLAMLARAD---AFDTVVIALVGERGREVREFLEDTLADNLKKAVAVVATSDESPMMRRLAPL 240 (450)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCC---CCCeeeeeecccCCccHHHHhHHHHHHhhCCeEEEEEcCCCCHHHHHHHHH
Confidence 34679999999999999999887632 1223444544334445555444443332110 111111111
Q ss_pred HHHHHHHHh--cCceEEEEEecCC
Q 002308 245 LLISIDESI--AGKRFLLVLDDVW 266 (938)
Q Consensus 245 ~~~~l~~~l--~~~~~LlVlDdv~ 266 (938)
..-.+.+++ +++++|+++||+.
T Consensus 241 ~a~~iAEyfrd~G~~Vll~~DslT 264 (450)
T PRK06002 241 TATAIAEYFRDRGENVLLIVDSVT 264 (450)
T ss_pred HHHHHHHHHHHcCCCEEEeccchH
Confidence 112233444 4889999999984
No 396
>PRK09280 F0F1 ATP synthase subunit beta; Validated
Probab=94.65 E-value=0.17 Score=55.81 Aligned_cols=90 Identities=22% Similarity=0.259 Sum_probs=54.2
Q ss_pred CeEEEEEEccCCChHHHHHHHHhhhhhhhcccCeEEEEEeCCCC-CHHHHHHHHHHHhcCC-------CCCCCcHHHH--
Q 002308 176 GLHIISIVGMGGIGKTTLAQLACNHVEVKREFDKTLWVCVSETF-DEFRIAKAMLEALTGS-------TSNLNALQSL-- 245 (938)
Q Consensus 176 ~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~i~~~l~~~-------~~~~~~~~~~-- 245 (938)
....++|.|.+|+|||||+.+++....... =+.++++-+++.. .+.++.+++...=... ..+.......
T Consensus 143 kGQR~gIfa~~GvGKt~Ll~~i~~~~~~~~-~~v~V~~liGER~rEv~efi~~~~~~~~l~rsvvV~atsd~p~~~r~~a 221 (463)
T PRK09280 143 KGGKIGLFGGAGVGKTVLIQELINNIAKEH-GGYSVFAGVGERTREGNDLYHEMKESGVLDKTALVFGQMNEPPGARLRV 221 (463)
T ss_pred cCCEEEeecCCCCChhHHHHHHHHHHHhcC-CCEEEEEEeccCcHHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHHHH
Confidence 346789999999999999999877532211 1456677776543 4455666655431111 1122222211
Q ss_pred ---HHHHHHHh---cCceEEEEEecCC
Q 002308 246 ---LISIDESI---AGKRFLLVLDDVW 266 (938)
Q Consensus 246 ---~~~l~~~l---~~~~~LlVlDdv~ 266 (938)
.-.+.+++ +++++||++|++.
T Consensus 222 ~~~a~tiAEyfrd~~G~~VLll~DslT 248 (463)
T PRK09280 222 ALTGLTMAEYFRDVEGQDVLLFIDNIF 248 (463)
T ss_pred HHHHHHHHHHHHHhcCCceEEEecchH
Confidence 22245555 6799999999994
No 397
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=94.65 E-value=0.41 Score=47.75 Aligned_cols=24 Identities=38% Similarity=0.394 Sum_probs=21.3
Q ss_pred CeEEEEEEccCCChHHHHHHHHhh
Q 002308 176 GLHIISIVGMGGIGKTTLAQLACN 199 (938)
Q Consensus 176 ~~~vv~i~G~~GiGKTtLa~~v~~ 199 (938)
...+++|.|..|.|||||++.++.
T Consensus 33 ~G~~~~i~G~nGsGKSTLl~~l~G 56 (207)
T cd03369 33 AGEKIGIVGRTGAGKSTLILALFR 56 (207)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhc
Confidence 346899999999999999999875
No 398
>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []. The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.
Probab=94.63 E-value=0.11 Score=53.78 Aligned_cols=23 Identities=30% Similarity=0.277 Sum_probs=18.3
Q ss_pred EEEEEEccCCChHHHHHHHHhhh
Q 002308 178 HIISIVGMGGIGKTTLAQLACNH 200 (938)
Q Consensus 178 ~vv~i~G~~GiGKTtLa~~v~~~ 200 (938)
..|.|.|.+|+||||+|+.+...
T Consensus 2 pLiil~G~P~SGKTt~a~~L~~~ 24 (270)
T PF08433_consen 2 PLIILCGLPCSGKTTRAKELKKY 24 (270)
T ss_dssp -EEEEE--TTSSHHHHHHHHHHH
T ss_pred EEEEEEcCCCCcHHHHHHHHHHH
Confidence 36899999999999999999885
No 399
>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]
Probab=94.62 E-value=0.4 Score=52.38 Aligned_cols=23 Identities=39% Similarity=0.577 Sum_probs=20.4
Q ss_pred eEEEEEEccCCChHHHHHHHHhh
Q 002308 177 LHIISIVGMGGIGKTTLAQLACN 199 (938)
Q Consensus 177 ~~vv~i~G~~GiGKTtLa~~v~~ 199 (938)
...++|+|+.|.||||||+.+.-
T Consensus 362 G~~lgIIGPSgSGKSTLaR~lvG 384 (580)
T COG4618 362 GEALGIIGPSGSGKSTLARLLVG 384 (580)
T ss_pred CceEEEECCCCccHHHHHHHHHc
Confidence 45799999999999999998765
No 400
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=94.61 E-value=0.08 Score=55.05 Aligned_cols=52 Identities=25% Similarity=0.232 Sum_probs=40.1
Q ss_pred CCeEEEEEEccCCChHHHHHHHHhhhhhhhcccCeEEEEEeCCCCCHHHHHHHHHH
Q 002308 175 KGLHIISIVGMGGIGKTTLAQLACNHVEVKREFDKTLWVCVSETFDEFRIAKAMLE 230 (938)
Q Consensus 175 ~~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~ 230 (938)
+..+++.|+|.+|+|||++|.++.. ....+...++||+..+. ..++.+.+.+
T Consensus 21 p~g~~~lI~G~pGsGKT~f~~qfl~--~~~~~ge~vlyvs~~e~--~~~l~~~~~~ 72 (260)
T COG0467 21 PRGSVVLITGPPGTGKTIFALQFLY--EGAREGEPVLYVSTEES--PEELLENARS 72 (260)
T ss_pred cCCcEEEEEcCCCCcHHHHHHHHHH--HHHhcCCcEEEEEecCC--HHHHHHHHHH
Confidence 4678999999999999999999998 45555788999988763 4444444443
No 401
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=94.61 E-value=0.22 Score=54.67 Aligned_cols=88 Identities=17% Similarity=0.290 Sum_probs=46.8
Q ss_pred CeEEEEEEccCCChHHHHHHHHhhhhhhhcccCeEEEEEeCC-CCCHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHhc
Q 002308 176 GLHIISIVGMGGIGKTTLAQLACNHVEVKREFDKTLWVCVSE-TFDEFRIAKAMLEALTGSTSNLNALQSLLISIDESIA 254 (938)
Q Consensus 176 ~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~-~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~ 254 (938)
...+++++|+.|+||||++..++...........+.++.... .....+-+...++.++.+.....+..+....+. .+.
T Consensus 190 ~g~vi~lvGpnG~GKTTtlakLA~~~~~~~~~~~v~~i~~d~~rigalEQL~~~a~ilGvp~~~v~~~~dl~~al~-~l~ 268 (420)
T PRK14721 190 QGGVYALIGPTGVGKTTTTAKLAARAVIRHGADKVALLTTDSYRIGGHEQLRIYGKLLGVSVRSIKDIADLQLMLH-ELR 268 (420)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecCCcchhHHHHHHHHHHHcCCceecCCCHHHHHHHHH-Hhc
Confidence 457999999999999999998877422222223444444322 112223344445555443333333333333332 344
Q ss_pred CceEEEEEecC
Q 002308 255 GKRFLLVLDDV 265 (938)
Q Consensus 255 ~~~~LlVlDdv 265 (938)
++ -++++|-.
T Consensus 269 ~~-d~VLIDTa 278 (420)
T PRK14721 269 GK-HMVLIDTV 278 (420)
T ss_pred CC-CEEEecCC
Confidence 44 35667765
No 402
>PF13245 AAA_19: Part of AAA domain
Probab=94.60 E-value=0.067 Score=43.08 Aligned_cols=23 Identities=26% Similarity=0.273 Sum_probs=17.1
Q ss_pred eEEEEEEccCCChHHHHHHHHhh
Q 002308 177 LHIISIVGMGGIGKTTLAQLACN 199 (938)
Q Consensus 177 ~~vv~i~G~~GiGKTtLa~~v~~ 199 (938)
.+++.|.|++|.|||+++.....
T Consensus 10 ~~~~vv~g~pGtGKT~~~~~~i~ 32 (76)
T PF13245_consen 10 SPLFVVQGPPGTGKTTTLAARIA 32 (76)
T ss_pred CCeEEEECCCCCCHHHHHHHHHH
Confidence 35788899999999955544444
No 403
>COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]
Probab=94.59 E-value=0.4 Score=45.25 Aligned_cols=54 Identities=17% Similarity=0.198 Sum_probs=32.3
Q ss_pred HHHHHHHHHHhcCceEEEEEecCCCC-CccChhHHHHhhhC-CCCCcEEEEEcCCh
Q 002308 243 QSLLISIDESIAGKRFLLVLDDVWDG-DYIKWEPFYRCLKK-GLHGSKILITTRKE 296 (938)
Q Consensus 243 ~~~~~~l~~~l~~~~~LlVlDdv~~~-~~~~~~~l~~~l~~-~~~gs~ilvTtr~~ 296 (938)
.+..-.+.+..-.++-|-|||..... |...-..+...+.. ...|..||.||-.+
T Consensus 135 QqRRvAlArL~ls~~pLWiLDEP~taLDk~g~a~l~~l~~~H~~~GGiVllttHq~ 190 (209)
T COG4133 135 QQRRVALARLWLSPAPLWILDEPFTALDKEGVALLTALMAAHAAQGGIVLLTTHQP 190 (209)
T ss_pred HHHHHHHHHHHcCCCCceeecCcccccCHHHHHHHHHHHHHHhcCCCEEEEecCCc
Confidence 34444456666688889999997543 22222333333433 35677788888754
No 404
>COG1428 Deoxynucleoside kinases [Nucleotide transport and metabolism]
Probab=94.58 E-value=0.025 Score=54.32 Aligned_cols=24 Identities=50% Similarity=0.636 Sum_probs=21.8
Q ss_pred eEEEEEEccCCChHHHHHHHHhhh
Q 002308 177 LHIISIVGMGGIGKTTLAQLACNH 200 (938)
Q Consensus 177 ~~vv~i~G~~GiGKTtLa~~v~~~ 200 (938)
..+|+|-||-|+||||||+..++.
T Consensus 4 ~~~IvI~G~IG~GKSTLa~~La~~ 27 (216)
T COG1428 4 AMVIVIEGMIGAGKSTLAQALAEH 27 (216)
T ss_pred ccEEEEecccccCHHHHHHHHHHH
Confidence 468999999999999999999884
No 405
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=94.57 E-value=0.051 Score=49.00 Aligned_cols=41 Identities=20% Similarity=0.066 Sum_probs=29.4
Q ss_pred hhHHHHHHHHhccCcccCCCeEEEEEEccCCChHHHHHHHHhhhh
Q 002308 157 GERNALLSMLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNHV 201 (938)
Q Consensus 157 ~~~~~l~~~l~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~v~~~~ 201 (938)
++.+++-+.+...- ....+|.+.|.-|+||||+++.++...
T Consensus 6 ~~t~~l~~~l~~~l----~~~~~i~l~G~lGaGKTtl~~~l~~~l 46 (133)
T TIGR00150 6 KAMDKFGKAFAKPL----DFGTVVLLKGDLGAGKTTLVQGLLQGL 46 (133)
T ss_pred HHHHHHHHHHHHhC----CCCCEEEEEcCCCCCHHHHHHHHHHHc
Confidence 34555555554321 234589999999999999999999853
No 406
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=94.57 E-value=0.16 Score=50.40 Aligned_cols=120 Identities=19% Similarity=0.159 Sum_probs=61.6
Q ss_pred CeEEEEEEccCCChHHHHHHHHhhhh--h-hhcc--cC---------------eEEEEEeCCCCCH--HHHHHHHHHHhc
Q 002308 176 GLHIISIVGMGGIGKTTLAQLACNHV--E-VKRE--FD---------------KTLWVCVSETFDE--FRIAKAMLEALT 233 (938)
Q Consensus 176 ~~~vv~i~G~~GiGKTtLa~~v~~~~--~-~~~~--f~---------------~~~wv~~~~~~~~--~~~~~~i~~~l~ 233 (938)
...+++|.|..|.|||||.+.++... . ..+. |+ .+.|+. +.... .....+++...
T Consensus 25 ~Ge~~~i~G~nGsGKStLl~~l~G~~~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~--q~~~~~~~~~~~~~l~~~- 101 (200)
T cd03217 25 KGEVHALMGPNGSGKSTLAKTIMGHPKYEVTEGEILFKGEDITDLPPEERARLGIFLAF--QYPPEIPGVKNADFLRYV- 101 (200)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCcCCCCccEEEECCEECCcCCHHHHhhCcEEEee--cChhhccCccHHHHHhhc-
Confidence 34689999999999999999988741 0 0110 00 011211 11100 00111111111
Q ss_pred CCCCCCCcHHHHHHHHHHHhcCceEEEEEecCCC-CCccChhHHHHhhhCC-CCCcEEEEEcCChhhhh
Q 002308 234 GSTSNLNALQSLLISIDESIAGKRFLLVLDDVWD-GDYIKWEPFYRCLKKG-LHGSKILITTRKESIVS 300 (938)
Q Consensus 234 ~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~-~~~~~~~~l~~~l~~~-~~gs~ilvTtr~~~v~~ 300 (938)
....+..+...-.+.+.+-.++-++++|+--. .|......+...+... ..|..||++|.+.....
T Consensus 102 --~~~LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~L~~~~~~~~tiii~sh~~~~~~ 168 (200)
T cd03217 102 --NEGFSGGEKKRNEILQLLLLEPDLAILDEPDSGLDIDALRLVAEVINKLREEGKSVLIITHYQRLLD 168 (200)
T ss_pred --cccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHH
Confidence 11223333333445566666777999998743 2323334444444432 23566888888776554
No 407
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=94.56 E-value=0.19 Score=50.17 Aligned_cols=63 Identities=13% Similarity=0.125 Sum_probs=36.9
Q ss_pred HHHHhcCceEEEEEecCCC-CCccChhHHHHhhhC-CCCCcEEEEEcCChhhhhhhcCCceEeCCCCC
Q 002308 249 IDESIAGKRFLLVLDDVWD-GDYIKWEPFYRCLKK-GLHGSKILITTRKESIVSMMRSTDIISIEELA 314 (938)
Q Consensus 249 l~~~l~~~~~LlVlDdv~~-~~~~~~~~l~~~l~~-~~~gs~ilvTtr~~~v~~~~~~~~~~~l~~L~ 314 (938)
+.+.+-.++-++++|+--. .|......+...+.. ...|..||++|.+...... ...+.+..+.
T Consensus 138 la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~---~~~~~~~~~~ 202 (207)
T PRK13539 138 LARLLVSNRPIWILDEPTAALDAAAVALFAELIRAHLAQGGIVIAATHIPLGLPG---ARELDLGPFA 202 (207)
T ss_pred HHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCchhhcc---CcEEeecCcc
Confidence 4445556678999998643 233334445555543 2246678888887655443 5566665543
No 408
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=94.53 E-value=0.33 Score=49.18 Aligned_cols=127 Identities=21% Similarity=0.239 Sum_probs=67.4
Q ss_pred CeEEEEEEccCCChHHHHHHHHhhhhhhhc----------------cc-CeEEEEE--------------e--CCC----
Q 002308 176 GLHIISIVGMGGIGKTTLAQLACNHVEVKR----------------EF-DKTLWVC--------------V--SET---- 218 (938)
Q Consensus 176 ~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~----------------~f-~~~~wv~--------------~--~~~---- 218 (938)
...+++|.|+.|+|||||.+.++.-..... .+ ..+.||. | ++.
T Consensus 27 ~G~i~~iiGpNG~GKSTLLk~l~g~l~p~~G~V~l~g~~i~~~~~kelAk~ia~vpQ~~~~~~~~tV~d~V~~GR~p~~~ 106 (258)
T COG1120 27 KGEITGILGPNGSGKSTLLKCLAGLLKPKSGEVLLDGKDIASLSPKELAKKLAYVPQSPSAPFGLTVYELVLLGRYPHLG 106 (258)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCCchhhcCHHHHhhhEEEeccCCCCCCCcEEeehHhhcCCcccc
Confidence 457999999999999999999988321100 00 0122221 0 100
Q ss_pred -C---C--HHHHHHHHHHHhcCC------CCCCCcHHHHHHHHHHHhcCceEEEEEecCCC-CCccChhHHHHhhhCC--
Q 002308 219 -F---D--EFRIAKAMLEALTGS------TSNLNALQSLLISIDESIAGKRFLLVLDDVWD-GDYIKWEPFYRCLKKG-- 283 (938)
Q Consensus 219 -~---~--~~~~~~~i~~~l~~~------~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~-~~~~~~~~l~~~l~~~-- 283 (938)
+ + -.+...+.++.++.. ....+..+.-...+.+.+..+.=+++||.=-+ -|...-.++...+...
T Consensus 107 ~~~~~~~~D~~~v~~aL~~~~~~~la~r~~~~LSGGerQrv~iArALaQ~~~iLLLDEPTs~LDi~~Q~evl~ll~~l~~ 186 (258)
T COG1120 107 LFGRPSKEDEEIVEEALELLGLEHLADRPVDELSGGERQRVLIARALAQETPILLLDEPTSHLDIAHQIEVLELLRDLNR 186 (258)
T ss_pred cccCCCHhHHHHHHHHHHHhCcHHHhcCcccccChhHHHHHHHHHHHhcCCCEEEeCCCccccCHHHHHHHHHHHHHHHH
Confidence 0 1 112344445544422 12223333344556677777777888997432 1111122233333331
Q ss_pred CCCcEEEEEcCChhhhhhh
Q 002308 284 LHGSKILITTRKESIVSMM 302 (938)
Q Consensus 284 ~~gs~ilvTtr~~~v~~~~ 302 (938)
..|.-||+++-+...|...
T Consensus 187 ~~~~tvv~vlHDlN~A~ry 205 (258)
T COG1120 187 EKGLTVVMVLHDLNLAARY 205 (258)
T ss_pred hcCCEEEEEecCHHHHHHh
Confidence 3466699999988776653
No 409
>PRK06762 hypothetical protein; Provisional
Probab=94.52 E-value=0.031 Score=53.65 Aligned_cols=24 Identities=38% Similarity=0.457 Sum_probs=21.3
Q ss_pred eEEEEEEccCCChHHHHHHHHhhh
Q 002308 177 LHIISIVGMGGIGKTTLAQLACNH 200 (938)
Q Consensus 177 ~~vv~i~G~~GiGKTtLa~~v~~~ 200 (938)
..+|.|.|++|+||||+|+.+...
T Consensus 2 ~~li~i~G~~GsGKST~A~~L~~~ 25 (166)
T PRK06762 2 TTLIIIRGNSGSGKTTIAKQLQER 25 (166)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 368999999999999999998873
No 410
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=94.51 E-value=0.18 Score=51.26 Aligned_cols=40 Identities=20% Similarity=0.304 Sum_probs=30.0
Q ss_pred CeEEEEEEccCCChHHHHHHHHhhhhhhhcccCeEEEEEeCC
Q 002308 176 GLHIISIVGMGGIGKTTLAQLACNHVEVKREFDKTLWVCVSE 217 (938)
Q Consensus 176 ~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~ 217 (938)
....+.|.|.+|+|||++|..++... .+ .-..++|++...
T Consensus 19 ~G~~~~i~G~~G~GKT~l~~~~~~~~-~~-~g~~~~~is~e~ 58 (229)
T TIGR03881 19 RGFFVAVTGEPGTGKTIFCLHFAYKG-LR-DGDPVIYVTTEE 58 (229)
T ss_pred CCeEEEEECCCCCChHHHHHHHHHHH-Hh-cCCeEEEEEccC
Confidence 56799999999999999999877632 22 235678887644
No 411
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=94.50 E-value=0.087 Score=56.94 Aligned_cols=81 Identities=21% Similarity=0.240 Sum_probs=49.3
Q ss_pred CceecchhhHHHHHHHHhcc--------CcccCCCeEEEEEEccCCChHHHHHHHHhhhhhhhccc---CeEEEEEeC-C
Q 002308 150 EEICGRVGERNALLSMLLCE--------SSEQQKGLHIISIVGMGGIGKTTLAQLACNHVEVKREF---DKTLWVCVS-E 217 (938)
Q Consensus 150 ~~~vGr~~~~~~l~~~l~~~--------~~~~~~~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f---~~~~wv~~~-~ 217 (938)
..++|.+...+.+..++... .....-..+.+.++|++|+|||++|+.+... ....| +...|...+ .
T Consensus 15 ~~IiGQe~AkkalavAl~~~~~r~~l~~~~~~e~~~~~ILliGp~G~GKT~LAr~LAk~--l~~~fi~vD~t~f~e~Gyv 92 (443)
T PRK05201 15 KYIIGQDDAKRAVAIALRNRWRRMQLPEELRDEVTPKNILMIGPTGVGKTEIARRLAKL--ANAPFIKVEATKFTEVGYV 92 (443)
T ss_pred cccCCHHHHHHHHHHHHHHHHHHhcCCcccccccCCceEEEECCCCCCHHHHHHHHHHH--hCChheeecchhhccCCcc
Confidence 45899999888888777531 0000112467899999999999999999884 33333 322222211 2
Q ss_pred CCCHHHHHHHHHHHh
Q 002308 218 TFDEFRIAKAMLEAL 232 (938)
Q Consensus 218 ~~~~~~~~~~i~~~l 232 (938)
..+.+...+.+....
T Consensus 93 G~d~e~~ir~L~~~A 107 (443)
T PRK05201 93 GRDVESIIRDLVEIA 107 (443)
T ss_pred cCCHHHHHHHHHHHH
Confidence 235556666655543
No 412
>PRK08006 replicative DNA helicase; Provisional
Probab=94.49 E-value=3.7 Score=46.41 Aligned_cols=55 Identities=24% Similarity=0.292 Sum_probs=38.7
Q ss_pred CeEEEEEEccCCChHHHHHHHHhhhhhhhcccCeEEEEEeCCCCCHHHHHHHHHHHhc
Q 002308 176 GLHIISIVGMGGIGKTTLAQLACNHVEVKREFDKTLWVCVSETFDEFRIAKAMLEALT 233 (938)
Q Consensus 176 ~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~ 233 (938)
....+.|-|.+|+|||++|..++.....+... .++++ |-..+..++...++....
T Consensus 223 ~G~LiiIaarPgmGKTafalnia~~~a~~~g~-~V~~f--SlEM~~~ql~~Rlla~~~ 277 (471)
T PRK08006 223 PSDLIIVAARPSMGKTTFAMNLCENAAMLQDK-PVLIF--SLEMPGEQIMMRMLASLS 277 (471)
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHHHhcCC-eEEEE--eccCCHHHHHHHHHHHhc
Confidence 45688999999999999999988754333222 34444 444677888888887654
No 413
>PRK12597 F0F1 ATP synthase subunit beta; Provisional
Probab=94.47 E-value=0.18 Score=55.84 Aligned_cols=90 Identities=18% Similarity=0.196 Sum_probs=55.1
Q ss_pred CeEEEEEEccCCChHHHHHHHHhhhhhhhcccCeEEEEEeCCCC-CHHHHHHHHHHHhcCC-------CCCCCcHHH---
Q 002308 176 GLHIISIVGMGGIGKTTLAQLACNHVEVKREFDKTLWVCVSETF-DEFRIAKAMLEALTGS-------TSNLNALQS--- 244 (938)
Q Consensus 176 ~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~i~~~l~~~-------~~~~~~~~~--- 244 (938)
....++|.|.+|+|||||+.++++.... .+-+.++++-+++.. .+.++..++...-... ..+......
T Consensus 142 kGQR~gIfa~~G~GKt~Ll~~~~~~~~~-~~~dv~V~~liGER~rEv~ef~~~~~~~~~l~rsvvv~atsd~~~~~R~~a 220 (461)
T PRK12597 142 KGGKTGLFGGAGVGKTVLMMELIFNISK-QHSGSSVFAGVGERSREGHELYHEMKESGVLDKTVMVYGQMNEPPGARMRV 220 (461)
T ss_pred cCCEEEeecCCCCChhHHHHHHHHHHHh-hCCCEEEEEcCCcchHHHHHHHHHHHhcCCcceeEEEecCCCCCHHHHHHH
Confidence 4467899999999999999998885332 245777777776543 4455555555431110 111111111
Q ss_pred --HHHHHHHHh---cCceEEEEEecCC
Q 002308 245 --LLISIDESI---AGKRFLLVLDDVW 266 (938)
Q Consensus 245 --~~~~l~~~l---~~~~~LlVlDdv~ 266 (938)
....+.+++ +++++|+++|++.
T Consensus 221 ~~~a~tiAEyfrd~~G~~VLl~~DslT 247 (461)
T PRK12597 221 VLTGLTIAEYLRDEEKEDVLLFIDNIF 247 (461)
T ss_pred HHHHHHHHHHHHHhcCCceEEEeccch
Confidence 122244554 3799999999994
No 414
>PRK06217 hypothetical protein; Validated
Probab=94.45 E-value=0.12 Score=50.40 Aligned_cols=22 Identities=36% Similarity=0.487 Sum_probs=20.3
Q ss_pred EEEEEccCCChHHHHHHHHhhh
Q 002308 179 IISIVGMGGIGKTTLAQLACNH 200 (938)
Q Consensus 179 vv~i~G~~GiGKTtLa~~v~~~ 200 (938)
.|.|.|.+|+||||+|+.+...
T Consensus 3 ~I~i~G~~GsGKSTla~~L~~~ 24 (183)
T PRK06217 3 RIHITGASGSGTTTLGAALAER 24 (183)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4899999999999999999884
No 415
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=94.44 E-value=0.092 Score=50.87 Aligned_cols=22 Identities=41% Similarity=0.646 Sum_probs=20.2
Q ss_pred EEEEEccCCChHHHHHHHHhhh
Q 002308 179 IISIVGMGGIGKTTLAQLACNH 200 (938)
Q Consensus 179 vv~i~G~~GiGKTtLa~~v~~~ 200 (938)
+|+|.|.+|+||||+|+.+...
T Consensus 1 ii~i~G~sgsGKttla~~l~~~ 22 (179)
T cd02028 1 VVGIAGPSGSGKTTFAKKLSNQ 22 (179)
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999999884
No 416
>PRK11388 DNA-binding transcriptional regulator DhaR; Provisional
Probab=94.43 E-value=0.12 Score=61.65 Aligned_cols=131 Identities=18% Similarity=0.116 Sum_probs=72.0
Q ss_pred CceecchhhHHHHHHHHhccCcccCCCeEEEEEEccCCChHHHHHHHHhhhhhhhcccCeEEEEEeCCCCCHHHHHHHHH
Q 002308 150 EEICGRVGERNALLSMLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNHVEVKREFDKTLWVCVSETFDEFRIAKAML 229 (938)
Q Consensus 150 ~~~vGr~~~~~~l~~~l~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 229 (938)
+.++|....+.++.+....-.. ....|.|+|..|+||+++|+.+.+.... .-...+.|++..-. ...+..+
T Consensus 325 ~~l~g~s~~~~~~~~~~~~~a~----~~~pvli~Ge~GtGK~~~A~~ih~~s~r--~~~pfv~vnc~~~~-~~~~~~e-- 395 (638)
T PRK11388 325 DHMPQDSPQMRRLIHFGRQAAK----SSFPVLLCGEEGVGKALLAQAIHNESER--AAGPYIAVNCQLYP-DEALAEE-- 395 (638)
T ss_pred cceEECCHHHHHHHHHHHHHhC----cCCCEEEECCCCcCHHHHHHHHHHhCCc--cCCCeEEEECCCCC-hHHHHHH--
Confidence 4588988888887777664332 2335889999999999999999874211 11233445554432 1222222
Q ss_pred HHhcCCCCCCCcHHHHHHHHHHHhcCceEEEEEecCCCCCccChhHHHHhhhCCC---C--------CcEEEEEcCC
Q 002308 230 EALTGSTSNLNALQSLLISIDESIAGKRFLLVLDDVWDGDYIKWEPFYRCLKKGL---H--------GSKILITTRK 295 (938)
Q Consensus 230 ~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~~~~~~~l~~~l~~~~---~--------gs~ilvTtr~ 295 (938)
+.+......... ....+. ....=.|+||++..........+...+..+. . ..+||.||..
T Consensus 396 --lfg~~~~~~~~~-~~g~~~---~a~~GtL~ldei~~l~~~~Q~~Ll~~l~~~~~~~~~~~~~~~~~~riI~~t~~ 466 (638)
T PRK11388 396 --FLGSDRTDSENG-RLSKFE---LAHGGTLFLEKVEYLSPELQSALLQVLKTGVITRLDSRRLIPVDVRVIATTTA 466 (638)
T ss_pred --hcCCCCcCccCC-CCCcee---ECCCCEEEEcChhhCCHHHHHHHHHHHhcCcEEeCCCCceEEeeEEEEEeccC
Confidence 222111000000 000000 1123458999998876666667777775432 1 3467776654
No 417
>PRK04328 hypothetical protein; Provisional
Probab=94.41 E-value=0.15 Score=52.52 Aligned_cols=40 Identities=18% Similarity=0.248 Sum_probs=30.7
Q ss_pred CeEEEEEEccCCChHHHHHHHHhhhhhhhcccCeEEEEEeCC
Q 002308 176 GLHIISIVGMGGIGKTTLAQLACNHVEVKREFDKTLWVCVSE 217 (938)
Q Consensus 176 ~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~ 217 (938)
...++.|.|.+|+|||+||.++.... .+ .-..++|++..+
T Consensus 22 ~gs~ili~G~pGsGKT~l~~~fl~~~-~~-~ge~~lyis~ee 61 (249)
T PRK04328 22 ERNVVLLSGGPGTGKSIFSQQFLWNG-LQ-MGEPGVYVALEE 61 (249)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHH-Hh-cCCcEEEEEeeC
Confidence 56799999999999999999987642 22 235678888766
No 418
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=94.40 E-value=0.33 Score=49.07 Aligned_cols=25 Identities=28% Similarity=0.282 Sum_probs=21.7
Q ss_pred CeEEEEEEccCCChHHHHHHHHhhh
Q 002308 176 GLHIISIVGMGGIGKTTLAQLACNH 200 (938)
Q Consensus 176 ~~~vv~i~G~~GiGKTtLa~~v~~~ 200 (938)
...+++|.|+.|.|||||++.++..
T Consensus 29 ~Ge~~~i~G~nGsGKSTLl~~l~G~ 53 (221)
T cd03244 29 PGEKVGIVGRTGSGKSSLLLALFRL 53 (221)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHcC
Confidence 3468999999999999999998763
No 419
>cd01135 V_A-ATPase_B V/A-type ATP synthase (non-catalytic) subunit B. These ATPases couple ATP hydrolysis to the build up of a H+ gradient, but V-type ATPases do not catalyze the reverse reaction. The Vacuolar (V-type) ATPase is found in the membranes of vacuoles, the golgi apparatus and in other coated vesicles in eukaryotes. Archaea have a protein which is similar in sequence to V-ATPases, but functions like an F-ATPase (called A-ATPase). A similar protein is also found in a few bacteria. This subfamily consists of the non-catalytic beta subunit.
Probab=94.39 E-value=0.14 Score=52.32 Aligned_cols=92 Identities=20% Similarity=0.224 Sum_probs=55.1
Q ss_pred CeEEEEEEccCCChHHHHHHHHhhhhhh--hcccCeEEEEEeCCCC-CHHHHHHHHHHHhcCC-------CCCCCcHHH-
Q 002308 176 GLHIISIVGMGGIGKTTLAQLACNHVEV--KREFDKTLWVCVSETF-DEFRIAKAMLEALTGS-------TSNLNALQS- 244 (938)
Q Consensus 176 ~~~vv~i~G~~GiGKTtLa~~v~~~~~~--~~~f~~~~wv~~~~~~-~~~~~~~~i~~~l~~~-------~~~~~~~~~- 244 (938)
..+.++|.|.+|+|||+|+..+.+.... +.+-+.++++-+++.. .+.++..++...=... ..+......
T Consensus 68 ~GQR~gIfgg~GvGKt~L~~~i~~~~~~~~~~~~~v~V~~~IGeR~rev~e~~~~~~~~~~l~~tv~v~~t~~~~~~~r~ 147 (276)
T cd01135 68 RGQKIPIFSGSGLPHNELAAQIARQAGVVGEEENFAVVFAAMGITMEDARFFKDDFEETGALERVVLFLNLANDPTIERI 147 (276)
T ss_pred cCCEEEeecCCCCChhHHHHHHHHhhhccccCCCCEEEEEEeccccHHHHHHHHHhhhcCCcceEEEEEecCCCCHHHHH
Confidence 3456899999999999999998875321 1224678888887644 4455555555431111 111111111
Q ss_pred ----HHHHHHHHhc---CceEEEEEecCCC
Q 002308 245 ----LLISIDESIA---GKRFLLVLDDVWD 267 (938)
Q Consensus 245 ----~~~~l~~~l~---~~~~LlVlDdv~~ 267 (938)
..-.+.++++ ++++|+++||+..
T Consensus 148 ~a~~~a~aiAEyfrd~~g~~VLl~~D~ltr 177 (276)
T cd01135 148 ITPRMALTTAEYLAYEKGKHVLVILTDMTN 177 (276)
T ss_pred HHHHHHHHHHHHHHhccCCeEEEEEcChhH
Confidence 1122444443 6899999999843
No 420
>COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=94.37 E-value=0.96 Score=41.93 Aligned_cols=87 Identities=18% Similarity=0.193 Sum_probs=54.3
Q ss_pred CCCHHHHHHHHHHHhcCC------CCCCCcHHHHHHHHHHHhcCceEEEEEecCC-CCCccChhHHHHhhh--CCCCCcE
Q 002308 218 TFDEFRIAKAMLEALTGS------TSNLNALQSLLISIDESIAGKRFLLVLDDVW-DGDYIKWEPFYRCLK--KGLHGSK 288 (938)
Q Consensus 218 ~~~~~~~~~~i~~~l~~~------~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~-~~~~~~~~~l~~~l~--~~~~gs~ 288 (938)
..+.....+..+.+++.. +...+..++-.-.|.+.+...+-+++-|.-. +-+...-+.+...+- ....|..
T Consensus 120 ~~~~~~~A~~lL~~vGLg~Rl~HyP~qLSGGEQQRVAiARAfa~~P~vLfADEPTGNLD~~Tg~~iaDLlF~lnre~G~T 199 (228)
T COG4181 120 SADSRAGAKALLEAVGLGKRLTHYPAQLSGGEQQRVALARAFAGRPDVLFADEPTGNLDRATGDKIADLLFALNRERGTT 199 (228)
T ss_pred cccHHHHHHHHHHHhCcccccccCccccCchHHHHHHHHHHhcCCCCEEeccCCCCCcchhHHHHHHHHHHHHhhhcCce
Confidence 335556677777777643 2334555666667888888888888888642 122222233333322 2357888
Q ss_pred EEEEcCChhhhhhhcC
Q 002308 289 ILITTRKESIVSMMRS 304 (938)
Q Consensus 289 ilvTtr~~~v~~~~~~ 304 (938)
+++.|-++.++..|..
T Consensus 200 lVlVTHD~~LA~Rc~R 215 (228)
T COG4181 200 LVLVTHDPQLAARCDR 215 (228)
T ss_pred EEEEeCCHHHHHhhhh
Confidence 8888899998887654
No 421
>PRK09519 recA DNA recombination protein RecA; Reviewed
Probab=94.33 E-value=0.13 Score=60.50 Aligned_cols=85 Identities=22% Similarity=0.173 Sum_probs=56.0
Q ss_pred CCeEEEEEEccCCChHHHHHHHHhhhhhhhcccCeEEEEEeCCCCCHHHHHHHHHHHhcCCCC-----CCCcHHHHHHHH
Q 002308 175 KGLHIISIVGMGGIGKTTLAQLACNHVEVKREFDKTLWVCVSETFDEFRIAKAMLEALTGSTS-----NLNALQSLLISI 249 (938)
Q Consensus 175 ~~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~-----~~~~~~~~~~~l 249 (938)
+..+++-|+|++|+||||||.+++... ...=..++|+...+.++.. .+++++.... .....+.....+
T Consensus 58 p~GsiteI~G~~GsGKTtLal~~~~~a--~~~G~~v~yId~E~t~~~~-----~A~~lGvDl~~llv~~~~~~E~~l~~i 130 (790)
T PRK09519 58 PRGRVIEIYGPESSGKTTVALHAVANA--QAAGGVAAFIDAEHALDPD-----YAKKLGVDTDSLLVSQPDTGEQALEIA 130 (790)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHH--HHcCCcEEEECCccchhHH-----HHHHcCCChhHeEEecCCCHHHHHHHH
Confidence 356899999999999999998876632 2222567899888777643 5566654321 122334455555
Q ss_pred HHHhc-CceEEEEEecCC
Q 002308 250 DESIA-GKRFLLVLDDVW 266 (938)
Q Consensus 250 ~~~l~-~~~~LlVlDdv~ 266 (938)
...++ ++.-|||+|.+.
T Consensus 131 ~~lv~~~~~~LVVIDSI~ 148 (790)
T PRK09519 131 DMLIRSGALDIVVIDSVA 148 (790)
T ss_pred HHHhhcCCCeEEEEcchh
Confidence 55554 456699999974
No 422
>PRK03839 putative kinase; Provisional
Probab=94.32 E-value=0.033 Score=54.22 Aligned_cols=22 Identities=45% Similarity=0.776 Sum_probs=20.1
Q ss_pred EEEEEccCCChHHHHHHHHhhh
Q 002308 179 IISIVGMGGIGKTTLAQLACNH 200 (938)
Q Consensus 179 vv~i~G~~GiGKTtLa~~v~~~ 200 (938)
.|.|.|++|+||||+|+.+++.
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~ 23 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEK 23 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4889999999999999999884
No 423
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=94.30 E-value=0.37 Score=47.59 Aligned_cols=23 Identities=26% Similarity=0.203 Sum_probs=21.1
Q ss_pred EEEEEEccCCChHHHHHHHHhhh
Q 002308 178 HIISIVGMGGIGKTTLAQLACNH 200 (938)
Q Consensus 178 ~vv~i~G~~GiGKTtLa~~v~~~ 200 (938)
++++|.|+.|.|||||.+.+.-.
T Consensus 26 ~~~~ltGpNg~GKSTllr~i~~~ 48 (199)
T cd03283 26 NGILITGSNMSGKSTFLRTIGVN 48 (199)
T ss_pred cEEEEECCCCCChHHHHHHHHHH
Confidence 79999999999999999998764
No 424
>PRK07276 DNA polymerase III subunit delta'; Validated
Probab=94.29 E-value=2 Score=44.72 Aligned_cols=69 Identities=14% Similarity=0.228 Sum_probs=47.7
Q ss_pred CceEEEEEecCCCCCccChhHHHHhhhCCCCCcEEEEEcCCh-hhhhhh-cCCceEeCCCCChHHHHHHHHH
Q 002308 255 GKRFLLVLDDVWDGDYIKWEPFYRCLKKGLHGSKILITTRKE-SIVSMM-RSTDIISIEELAEEECWVLFKR 324 (938)
Q Consensus 255 ~~~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtr~~-~v~~~~-~~~~~~~l~~L~~~~~~~lf~~ 324 (938)
+++=++|+|+++......++.++..+..-..++.+|++|.+. .+...+ +..+.+.+.+ +.++..+.+..
T Consensus 103 ~~~kV~II~~ad~m~~~AaNaLLKtLEEPp~~t~~iL~t~~~~~lLpTI~SRcq~i~f~~-~~~~~~~~L~~ 173 (290)
T PRK07276 103 GKQQVFIIKDADKMHVNAANSLLKVIEEPQSEIYIFLLTNDENKVLPTIKSRTQIFHFPK-NEAYLIQLLEQ 173 (290)
T ss_pred CCcEEEEeehhhhcCHHHHHHHHHHhcCCCCCeEEEEEECChhhCchHHHHcceeeeCCC-cHHHHHHHHHH
Confidence 556689999998877777888888887766666666666554 444443 4466788866 66666666653
No 425
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=94.26 E-value=0.24 Score=58.22 Aligned_cols=87 Identities=17% Similarity=0.266 Sum_probs=49.8
Q ss_pred eEEEEEEccCCChHHHHHHHHhhhhhhhcccCeEEEEEeCCCCC--HHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHhc
Q 002308 177 LHIISIVGMGGIGKTTLAQLACNHVEVKREFDKTLWVCVSETFD--EFRIAKAMLEALTGSTSNLNALQSLLISIDESIA 254 (938)
Q Consensus 177 ~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~--~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~ 254 (938)
.++++++|+.|+||||.+.+++........-..+..+... .+. ..+-++...+.++.+.....+.+++...+. .++
T Consensus 185 g~Vi~lVGpnGvGKTTTiaKLA~~~~~~~G~kkV~lit~D-t~RigA~eQL~~~a~~~gvpv~~~~~~~~l~~al~-~~~ 262 (767)
T PRK14723 185 GGVLALVGPTGVGKTTTTAKLAARCVAREGADQLALLTTD-SFRIGALEQLRIYGRILGVPVHAVKDAADLRFALA-ALG 262 (767)
T ss_pred CeEEEEECCCCCcHHHHHHHHHhhHHHHcCCCeEEEecCc-ccchHHHHHHHHHHHhCCCCccccCCHHHHHHHHH-Hhc
Confidence 5799999999999999999988743222222345555433 232 334455555555543333334444444444 334
Q ss_pred CceEEEEEecCC
Q 002308 255 GKRFLLVLDDVW 266 (938)
Q Consensus 255 ~~~~LlVlDdv~ 266 (938)
++. +|++|=.-
T Consensus 263 ~~D-~VLIDTAG 273 (767)
T PRK14723 263 DKH-LVLIDTVG 273 (767)
T ss_pred CCC-EEEEeCCC
Confidence 443 66777664
No 426
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=94.25 E-value=0.23 Score=55.39 Aligned_cols=88 Identities=13% Similarity=0.211 Sum_probs=46.6
Q ss_pred eEEEEEEccCCChHHHHHHHHhhhhhhhcccCeEEEEEeCC-CCCHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHhcC
Q 002308 177 LHIISIVGMGGIGKTTLAQLACNHVEVKREFDKTLWVCVSE-TFDEFRIAKAMLEALTGSTSNLNALQSLLISIDESIAG 255 (938)
Q Consensus 177 ~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~-~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~ 255 (938)
.+|++++|+.|+||||++.+++.....+..-..+..+.... .....+-++..++.++.......+..+....+ ..+.+
T Consensus 256 g~Vi~LvGpnGvGKTTTiaKLA~~~~~~~G~~kV~LI~~Dt~RigA~EQLr~~AeilGVpv~~~~~~~Dl~~aL-~~L~d 334 (484)
T PRK06995 256 GGVFALMGPTGVGKTTTTAKLAARCVMRHGASKVALLTTDSYRIGGHEQLRIYGKILGVPVHAVKDAADLRLAL-SELRN 334 (484)
T ss_pred CcEEEEECCCCccHHHHHHHHHHHHHHhcCCCeEEEEeCCccchhHHHHHHHHHHHhCCCeeccCCchhHHHHH-HhccC
Confidence 47999999999999999999997533332222355555432 11223334444444443322222222222222 23344
Q ss_pred ceEEEEEecCC
Q 002308 256 KRFLLVLDDVW 266 (938)
Q Consensus 256 ~~~LlVlDdv~ 266 (938)
+ ..+++|-..
T Consensus 335 ~-d~VLIDTaG 344 (484)
T PRK06995 335 K-HIVLIDTIG 344 (484)
T ss_pred C-CeEEeCCCC
Confidence 4 477788764
No 427
>PRK08972 fliI flagellum-specific ATP synthase; Validated
Probab=94.23 E-value=0.13 Score=56.14 Aligned_cols=87 Identities=17% Similarity=0.190 Sum_probs=51.1
Q ss_pred CeEEEEEEccCCChHHHHHHHHhhhhhhhcccCeEEEEEeCCCC-CHHHHHHHHHHHhcCC-------CCCCCcHHH---
Q 002308 176 GLHIISIVGMGGIGKTTLAQLACNHVEVKREFDKTLWVCVSETF-DEFRIAKAMLEALTGS-------TSNLNALQS--- 244 (938)
Q Consensus 176 ~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~i~~~l~~~-------~~~~~~~~~--- 244 (938)
....++|.|..|+|||||++.++... ..+.++++-+++.. .+.++.++++..-... ..+......
T Consensus 161 ~GqrigI~G~sG~GKSTLL~~I~~~~----~~dv~Vi~lIGER~rEv~efi~~~l~~~~l~rtvvv~atsd~p~~~R~~a 236 (444)
T PRK08972 161 KGQRMGLFAGSGVGKSVLLGMMTRGT----TADVIVVGLVGERGREVKEFIEEILGEEGRARSVVVAAPADTSPLMRLKG 236 (444)
T ss_pred CCCEEEEECCCCCChhHHHHHhccCC----CCCEEEEEEEcCChHHHHHHHHHhhccCCcccEEEEEECCCCCHHHHHHH
Confidence 34679999999999999999998631 22455666665543 3344555544331111 111111111
Q ss_pred --HHHHHHHHh--cCceEEEEEecCC
Q 002308 245 --LLISIDESI--AGKRFLLVLDDVW 266 (938)
Q Consensus 245 --~~~~l~~~l--~~~~~LlVlDdv~ 266 (938)
..-.+.+++ +++++|+++||+.
T Consensus 237 ~~~A~tiAEyfrd~G~~VLl~~DslT 262 (444)
T PRK08972 237 CETATTIAEYFRDQGLNVLLLMDSLT 262 (444)
T ss_pred HHHHHHHHHHHHHcCCCEEEEEcChH
Confidence 112244444 5899999999994
No 428
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=94.22 E-value=0.31 Score=48.03 Aligned_cols=119 Identities=18% Similarity=0.151 Sum_probs=60.3
Q ss_pred CeEEEEEEccCCChHHHHHHHHhhhhhhhcccCeEEEEE---------------eCCCCC---HHHHHHHHHHHhcCCCC
Q 002308 176 GLHIISIVGMGGIGKTTLAQLACNHVEVKREFDKTLWVC---------------VSETFD---EFRIAKAMLEALTGSTS 237 (938)
Q Consensus 176 ~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~---------------~~~~~~---~~~~~~~i~~~l~~~~~ 237 (938)
...+++|.|+.|.|||||.+.++.-.. .......+++. +.+... ...+...+.-.... .
T Consensus 34 ~Ge~~~l~G~nGsGKStLl~~i~Gl~~-~~~~~G~i~~~g~~~~~~~~~~~i~~~~q~~~~~~~~t~~~~i~~~~~~--~ 110 (194)
T cd03213 34 PGELTAIMGPSGAGKSTLLNALAGRRT-GLGVSGEVLINGRPLDKRSFRKIIGYVPQDDILHPTLTVRETLMFAAKL--R 110 (194)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCC-CCCCceEEEECCEeCchHhhhheEEEccCcccCCCCCcHHHHHHHHHHh--c
Confidence 446899999999999999999887320 01112222211 111110 01122222110000 0
Q ss_pred CCCcHHHHHHHHHHHhcCceEEEEEecCCC-CCccChhHHHHhhhCC-CCCcEEEEEcCChh
Q 002308 238 NLNALQSLLISIDESIAGKRFLLVLDDVWD-GDYIKWEPFYRCLKKG-LHGSKILITTRKES 297 (938)
Q Consensus 238 ~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~-~~~~~~~~l~~~l~~~-~~gs~ilvTtr~~~ 297 (938)
..+..+...-.+.+.+-.++-++++|+--. .|......+...+... ..|..||++|.+..
T Consensus 111 ~LS~G~~qrv~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~ 172 (194)
T cd03213 111 GLSGGERKRVSIALELVSNPSLLFLDEPTSGLDSSSALQVMSLLRRLADTGRTIICSIHQPS 172 (194)
T ss_pred cCCHHHHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEecCch
Confidence 222233333345555666777999998743 2333344455555432 23666888887753
No 429
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=94.20 E-value=0.4 Score=49.43 Aligned_cols=102 Identities=9% Similarity=0.061 Sum_probs=52.0
Q ss_pred eEEEEEEccCCChHHHHHHHHhhhhhhhcccCeEEEEEeCCCCCHH--HHHHHHHHHhcCCCCCCCcHHHHHHHHHHHhc
Q 002308 177 LHIISIVGMGGIGKTTLAQLACNHVEVKREFDKTLWVCVSETFDEF--RIAKAMLEALTGSTSNLNALQSLLISIDESIA 254 (938)
Q Consensus 177 ~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~--~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~ 254 (938)
..+++++|.+|+||||++..+.... ...=..+.+++... .... .-++..++.++.+.....+..++...+...-.
T Consensus 75 ~~~i~~~G~~g~GKTtl~~~l~~~l--~~~~~~v~~i~~D~-~ri~~~~ql~~~~~~~~~~~~~~~~~~~l~~~l~~l~~ 151 (270)
T PRK06731 75 VQTIALIGPTGVGKTTTLAKMAWQF--HGKKKTVGFITTDH-SRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFKE 151 (270)
T ss_pred CCEEEEECCCCCcHHHHHHHHHHHH--HHcCCeEEEEecCC-CCHHHHHHHHHHhhhcCceEEecCCHHHHHHHHHHHHh
Confidence 3689999999999999999887742 22112455555432 2222 12222333333221122333444444433222
Q ss_pred -CceEEEEEecCCCCC--ccChhHHHHhhh
Q 002308 255 -GKRFLLVLDDVWDGD--YIKWEPFYRCLK 281 (938)
Q Consensus 255 -~~~~LlVlDdv~~~~--~~~~~~l~~~l~ 281 (938)
++.=++++|..-... ....+++...+.
T Consensus 152 ~~~~D~ViIDt~Gr~~~~~~~l~el~~~~~ 181 (270)
T PRK06731 152 EARVDYILIDTAGKNYRASETVEEMIETMG 181 (270)
T ss_pred cCCCCEEEEECCCCCcCCHHHHHHHHHHHh
Confidence 245688899885532 223444444443
No 430
>KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism]
Probab=94.19 E-value=0.067 Score=47.93 Aligned_cols=69 Identities=17% Similarity=0.213 Sum_probs=39.2
Q ss_pred eEEEEEEccCCChHHHHHHHHhhhhhhhcccCeEEEEEeCCCCCHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHhcC
Q 002308 177 LHIISIVGMGGIGKTTLAQLACNHVEVKREFDKTLWVCVSETFDEFRIAKAMLEALTGSTSNLNALQSLLISIDESIAG 255 (938)
Q Consensus 177 ~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~ 255 (938)
..-|.|.|.+|+||||+|..++.. . ..-|++++.-.....++..-=++. ....-+.+.+...+...+.+
T Consensus 7 ~PNILvtGTPG~GKstl~~~lae~--~-----~~~~i~isd~vkEn~l~~gyDE~y---~c~i~DEdkv~D~Le~~m~~ 75 (176)
T KOG3347|consen 7 RPNILVTGTPGTGKSTLAERLAEK--T-----GLEYIEISDLVKENNLYEGYDEEY---KCHILDEDKVLDELEPLMIE 75 (176)
T ss_pred CCCEEEeCCCCCCchhHHHHHHHH--h-----CCceEehhhHHhhhcchhcccccc---cCccccHHHHHHHHHHHHhc
Confidence 345889999999999999998862 1 234677765433333222211111 12234445555566555544
No 431
>PRK04040 adenylate kinase; Provisional
Probab=94.19 E-value=0.039 Score=53.83 Aligned_cols=24 Identities=29% Similarity=0.617 Sum_probs=21.4
Q ss_pred eEEEEEEccCCChHHHHHHHHhhh
Q 002308 177 LHIISIVGMGGIGKTTLAQLACNH 200 (938)
Q Consensus 177 ~~vv~i~G~~GiGKTtLa~~v~~~ 200 (938)
..+|+|+|++|+||||+++.+...
T Consensus 2 ~~~i~v~G~pG~GKtt~~~~l~~~ 25 (188)
T PRK04040 2 MKVVVVTGVPGVGKTTVLNKALEK 25 (188)
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHH
Confidence 358999999999999999999873
No 432
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=94.18 E-value=0.25 Score=50.92 Aligned_cols=22 Identities=27% Similarity=0.631 Sum_probs=19.8
Q ss_pred EEEEEccCCChHHHHHHHHhhh
Q 002308 179 IISIVGMGGIGKTTLAQLACNH 200 (938)
Q Consensus 179 vv~i~G~~GiGKTtLa~~v~~~ 200 (938)
.|.+.|.+|+||||+|+.+...
T Consensus 1 LIvl~G~pGSGKST~a~~La~~ 22 (249)
T TIGR03574 1 LIILTGLPGVGKSTFSKELAKK 22 (249)
T ss_pred CEEEEcCCCCCHHHHHHHHHHH
Confidence 3789999999999999999874
No 433
>COG0003 ArsA Predicted ATPase involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=94.18 E-value=0.091 Score=55.41 Aligned_cols=49 Identities=24% Similarity=0.303 Sum_probs=34.7
Q ss_pred eEEEEEEccCCChHHHHHHHHhhhhhhhcccCeEEEEEeCCCCCHHHHHHH
Q 002308 177 LHIISIVGMGGIGKTTLAQLACNHVEVKREFDKTLWVCVSETFDEFRIAKA 227 (938)
Q Consensus 177 ~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~ 227 (938)
.+++...|.|||||||+|.+.+-. .......++-|+.....+..+++..
T Consensus 2 ~riv~f~GKGGVGKTT~aaA~A~~--lA~~g~kvLlvStDPAhsL~d~f~~ 50 (322)
T COG0003 2 TRIVFFTGKGGVGKTTIAAATAVK--LAESGKKVLLVSTDPAHSLGDVFDL 50 (322)
T ss_pred cEEEEEecCCcccHHHHHHHHHHH--HHHcCCcEEEEEeCCCCchHhhhcc
Confidence 478999999999999999986663 3333344777776666665555443
No 434
>PRK15424 propionate catabolism operon regulatory protein PrpR; Provisional
Probab=94.17 E-value=0.13 Score=58.73 Aligned_cols=47 Identities=19% Similarity=0.246 Sum_probs=37.8
Q ss_pred CceecchhhHHHHHHHHhccCcccCCCeEEEEEEccCCChHHHHHHHHhhh
Q 002308 150 EEICGRVGERNALLSMLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNH 200 (938)
Q Consensus 150 ~~~vGr~~~~~~l~~~l~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~v~~~ 200 (938)
..++|....++++.+.+..-. .....|.|.|..|+||+++|+.+++.
T Consensus 219 ~~iiG~S~~m~~~~~~i~~~A----~s~~pVLI~GE~GTGKe~~A~~IH~~ 265 (538)
T PRK15424 219 GDLLGQSPQMEQVRQTILLYA----RSSAAVLIQGETGTGKELAAQAIHRE 265 (538)
T ss_pred hheeeCCHHHHHHHHHHHHHh----CCCCcEEEECCCCCCHHHHHHHHHHh
Confidence 458999988888888775432 13457899999999999999999874
No 435
>PRK03846 adenylylsulfate kinase; Provisional
Probab=94.16 E-value=0.13 Score=50.91 Aligned_cols=26 Identities=23% Similarity=0.296 Sum_probs=23.1
Q ss_pred CCeEEEEEEccCCChHHHHHHHHhhh
Q 002308 175 KGLHIISIVGMGGIGKTTLAQLACNH 200 (938)
Q Consensus 175 ~~~~vv~i~G~~GiGKTtLa~~v~~~ 200 (938)
....+|+|.|++|+||||||+.+...
T Consensus 22 ~~~~~i~i~G~~GsGKSTla~~l~~~ 47 (198)
T PRK03846 22 HKGVVLWFTGLSGSGKSTVAGALEEA 47 (198)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 35679999999999999999999873
No 436
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=94.13 E-value=0.35 Score=47.12 Aligned_cols=25 Identities=32% Similarity=0.426 Sum_probs=22.0
Q ss_pred CeEEEEEEccCCChHHHHHHHHhhh
Q 002308 176 GLHIISIVGMGGIGKTTLAQLACNH 200 (938)
Q Consensus 176 ~~~vv~i~G~~GiGKTtLa~~v~~~ 200 (938)
...+++|.|..|.|||||++.++..
T Consensus 25 ~G~~~~i~G~nGsGKSTLl~~l~G~ 49 (182)
T cd03215 25 AGEIVGIAGLVGNGQTELAEALFGL 49 (182)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCC
Confidence 3468999999999999999999874
No 437
>PRK10875 recD exonuclease V subunit alpha; Provisional
Probab=94.12 E-value=0.24 Score=57.48 Aligned_cols=118 Identities=14% Similarity=0.116 Sum_probs=60.1
Q ss_pred eEEEEEEccCCChHHHHHHHHhhhhhhh-cccCeEEEEEeCCCCCHHHHHHHHHHHhcCCCCC---CCcHHHHHHHHHHH
Q 002308 177 LHIISIVGMGGIGKTTLAQLACNHVEVK-REFDKTLWVCVSETFDEFRIAKAMLEALTGSTSN---LNALQSLLISIDES 252 (938)
Q Consensus 177 ~~vv~i~G~~GiGKTtLa~~v~~~~~~~-~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~---~~~~~~~~~~l~~~ 252 (938)
.++..|.|.+|.||||++..+....... ..=...+.+.....-....+.+.+...+..-... .........-+.+.
T Consensus 167 ~~~~vItGgpGTGKTt~v~~ll~~l~~~~~~~~~~i~l~APTgkAA~rL~e~~~~~~~~~~~~~~~~~~~~~~a~TiHrl 246 (615)
T PRK10875 167 RRISVISGGPGTGKTTTVAKLLAALIQLADGERCRIRLAAPTGKAAARLTESLGKALRQLPLTDEQKKRIPEEASTLHRL 246 (615)
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHHHHHhcCCCCcEEEEECCcHHHHHHHHHHHHhhhhccccchhhhhcCCCchHHHHHH
Confidence 4689999999999999999887742111 1112355555544444444444444332211000 00000001122222
Q ss_pred hc------------Cce---EEEEEecCCCCCccChhHHHHhhhCCCCCcEEEEEcCChh
Q 002308 253 IA------------GKR---FLLVLDDVWDGDYIKWEPFYRCLKKGLHGSKILITTRKES 297 (938)
Q Consensus 253 l~------------~~~---~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtr~~~ 297 (938)
+. +.+ -++|+|.+.-.+......+...++ +++|+|+---..+
T Consensus 247 Lg~~~~~~~~~~~~~~~l~~dvlIvDEaSMvd~~lm~~ll~al~---~~~rlIlvGD~~Q 303 (615)
T PRK10875 247 LGAQPGSQRLRYHAGNPLHLDVLVVDEASMVDLPMMARLIDALP---PHARVIFLGDRDQ 303 (615)
T ss_pred hCcCCCccchhhccccCCCCCeEEEChHhcccHHHHHHHHHhcc---cCCEEEEecchhh
Confidence 21 111 289999986554444444555444 6788887665443
No 438
>PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX. This is the first unique step in the synthesis of (bacterio)chlorophyll. As a result, it is thought that Mg-chelatase has an important role in channeling intermediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weights between 38-42 kDa.; GO: 0016851 magnesium chelatase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process; PDB: 2X31_J 1G8P_A 3K1J_B.
Probab=94.11 E-value=0.076 Score=51.58 Aligned_cols=42 Identities=31% Similarity=0.392 Sum_probs=31.2
Q ss_pred CceecchhhHHHHHHHHhccCcccCCCeEEEEEEccCCChHHHHHHHHhh
Q 002308 150 EEICGRVGERNALLSMLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACN 199 (938)
Q Consensus 150 ~~~vGr~~~~~~l~~~l~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~v~~ 199 (938)
+.++|.+.....+.-+.. +.+-+.++|++|+|||++|+.+..
T Consensus 3 ~dI~GQe~aKrAL~iAAa--------G~h~lLl~GppGtGKTmlA~~l~~ 44 (206)
T PF01078_consen 3 SDIVGQEEAKRALEIAAA--------GGHHLLLIGPPGTGKTMLARRLPS 44 (206)
T ss_dssp CCSSSTHHHHHHHHHHHH--------CC--EEEES-CCCTHHHHHHHHHH
T ss_pred hhhcCcHHHHHHHHHHHc--------CCCCeEEECCCCCCHHHHHHHHHH
Confidence 467888877777766665 235789999999999999998765
No 439
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=94.11 E-value=0.095 Score=50.41 Aligned_cols=22 Identities=41% Similarity=0.516 Sum_probs=20.1
Q ss_pred EEEEEccCCChHHHHHHHHhhh
Q 002308 179 IISIVGMGGIGKTTLAQLACNH 200 (938)
Q Consensus 179 vv~i~G~~GiGKTtLa~~v~~~ 200 (938)
.|.|.|++|+||||+|+.+...
T Consensus 2 riiilG~pGaGK~T~A~~La~~ 23 (178)
T COG0563 2 RILILGPPGAGKSTLAKKLAKK 23 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999999885
No 440
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.11 E-value=0.45 Score=47.24 Aligned_cols=25 Identities=24% Similarity=0.341 Sum_probs=22.2
Q ss_pred CeEEEEEEccCCChHHHHHHHHhhh
Q 002308 176 GLHIISIVGMGGIGKTTLAQLACNH 200 (938)
Q Consensus 176 ~~~vv~i~G~~GiGKTtLa~~v~~~ 200 (938)
...+++|.|..|.|||||++.+...
T Consensus 32 ~Ge~~~i~G~nGsGKSTLl~~l~G~ 56 (202)
T cd03233 32 PGEMVLVLGRPGSGCSTLLKALANR 56 (202)
T ss_pred CCcEEEEECCCCCCHHHHHHHhccc
Confidence 4469999999999999999998874
No 441
>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family.
Probab=94.09 E-value=0.076 Score=51.85 Aligned_cols=118 Identities=14% Similarity=0.153 Sum_probs=56.4
Q ss_pred EEEEEccCCChHHHHHHHHhhhhhhhcccCeEEEEEeCCCCCHHHHHHHHHHHhcCCC---CCCCcHHHHHHHHHHHhcC
Q 002308 179 IISIVGMGGIGKTTLAQLACNHVEVKREFDKTLWVCVSETFDEFRIAKAMLEALTGST---SNLNALQSLLISIDESIAG 255 (938)
Q Consensus 179 vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~---~~~~~~~~~~~~l~~~l~~ 255 (938)
++.|.|+.|.||||+.+.+.-... ..+-.+.++..... -..+.++...++... ........-...+...+..
T Consensus 1 ~~~ltG~N~~GKst~l~~i~~~~~-la~~G~~v~a~~~~----~~~~d~il~~~~~~d~~~~~~s~fs~~~~~l~~~l~~ 75 (185)
T smart00534 1 VVIITGPNMGGKSTYLRQVGLIVI-MAQIGSFVPAESAE----LPVFDRIFTRIGASDSLAQGLSTFMVEMKETANILKN 75 (185)
T ss_pred CEEEECCCCCcHHHHHHHHHHHHH-HHHhCCCeeehheE----ecccceEEEEeCCCCchhccccHHHHHHHHHHHHHHh
Confidence 478999999999999999985321 11111111111000 000111111111110 0111222222234444443
Q ss_pred --ceEEEEEecCCCCC-ccChhHH----HHhhhCCCCCcEEEEEcCChhhhhhh
Q 002308 256 --KRFLLVLDDVWDGD-YIKWEPF----YRCLKKGLHGSKILITTRKESIVSMM 302 (938)
Q Consensus 256 --~~~LlVlDdv~~~~-~~~~~~l----~~~l~~~~~gs~ilvTtr~~~v~~~~ 302 (938)
++-++++|+.-..- ...-..+ ...+.. ..++.+|++|...++...+
T Consensus 76 ~~~~~llllDEp~~g~d~~~~~~~~~~~l~~l~~-~~~~~iii~TH~~~l~~~~ 128 (185)
T smart00534 76 ATENSLVLLDELGRGTSTYDGVAIAAAVLEYLLE-KIGALTLFATHYHELTKLA 128 (185)
T ss_pred CCCCeEEEEecCCCCCCHHHHHHHHHHHHHHHHh-cCCCeEEEEecHHHHHHHh
Confidence 78899999985432 1111122 222222 2367799999988776654
No 442
>PRK00625 shikimate kinase; Provisional
Probab=94.07 E-value=0.04 Score=52.81 Aligned_cols=22 Identities=23% Similarity=0.433 Sum_probs=19.8
Q ss_pred EEEEEccCCChHHHHHHHHhhh
Q 002308 179 IISIVGMGGIGKTTLAQLACNH 200 (938)
Q Consensus 179 vv~i~G~~GiGKTtLa~~v~~~ 200 (938)
.|.|+|++|+||||+++.+...
T Consensus 2 ~I~LiG~pGsGKTT~~k~La~~ 23 (173)
T PRK00625 2 QIFLCGLPTVGKTSFGKALAKF 23 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4889999999999999999873
No 443
>PRK12678 transcription termination factor Rho; Provisional
Probab=94.04 E-value=0.066 Score=59.65 Aligned_cols=99 Identities=19% Similarity=0.195 Sum_probs=51.6
Q ss_pred HHHHHHhccCcccCCCeEEEEEEccCCChHHHHHHHHhhhhhhhc-ccCeE-EEEEeCCCC-CHHHHHHHHHHHhcCCCC
Q 002308 161 ALLSMLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNHVEVKR-EFDKT-LWVCVSETF-DEFRIAKAMLEALTGSTS 237 (938)
Q Consensus 161 ~l~~~l~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~-~f~~~-~wv~~~~~~-~~~~~~~~i~~~l~~~~~ 237 (938)
++++.+..- ......+|+|++|+|||||++.+++. +.. +-++. +++-|.+.. .+.++.+.+-.++-....
T Consensus 405 RvIDll~PI-----GkGQR~LIvgpp~aGKTtLL~~IAn~--i~~n~~~~~~ivvLIgERpeEVtdm~rsVkgeVVasT~ 477 (672)
T PRK12678 405 RVIDLIMPI-----GKGQRGLIVSPPKAGKTTILQNIANA--ITTNNPECHLMVVLVDERPEEVTDMQRSVKGEVIASTF 477 (672)
T ss_pred eeeeeeccc-----ccCCEeEEeCCCCCCHHHHHHHHHHH--HhhcCCCeEEEEEEEeCchhhHHHHHHhccceEEEECC
Confidence 355555432 24467899999999999999999984 322 22332 244444433 233332222111111111
Q ss_pred CCCc-----HHHHHHHHHHHh--cCceEEEEEecCC
Q 002308 238 NLNA-----LQSLLISIDESI--AGKRFLLVLDDVW 266 (938)
Q Consensus 238 ~~~~-----~~~~~~~l~~~l--~~~~~LlVlDdv~ 266 (938)
+... .....-.+.+++ .++.+||++|++.
T Consensus 478 D~p~~~~~~~a~~ai~~Ae~fre~G~dVlillDSlT 513 (672)
T PRK12678 478 DRPPSDHTTVAELAIERAKRLVELGKDVVVLLDSIT 513 (672)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEEeCch
Confidence 1111 111222233444 5899999999984
No 444
>CHL00206 ycf2 Ycf2; Provisional
Probab=94.01 E-value=0.52 Score=60.03 Aligned_cols=25 Identities=20% Similarity=0.304 Sum_probs=22.3
Q ss_pred CeEEEEEEccCCChHHHHHHHHhhh
Q 002308 176 GLHIISIVGMGGIGKTTLAQLACNH 200 (938)
Q Consensus 176 ~~~vv~i~G~~GiGKTtLa~~v~~~ 200 (938)
.++=|.++|++|+|||.||++++.+
T Consensus 1629 pPKGILLiGPPGTGKTlLAKALA~e 1653 (2281)
T CHL00206 1629 PSRGILVIGSIGTGRSYLVKYLATN 1653 (2281)
T ss_pred CCCceEEECCCCCCHHHHHHHHHHh
Confidence 4567899999999999999999985
No 445
>TIGR03498 FliI_clade3 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=94.01 E-value=0.17 Score=55.62 Aligned_cols=89 Identities=20% Similarity=0.170 Sum_probs=48.9
Q ss_pred CeEEEEEEccCCChHHHHHHHHhhhhhhhcccCeEEEEEeCCCCCHHHHHHHHHHHhcCC-------CCCCCcHHHH---
Q 002308 176 GLHIISIVGMGGIGKTTLAQLACNHVEVKREFDKTLWVCVSETFDEFRIAKAMLEALTGS-------TSNLNALQSL--- 245 (938)
Q Consensus 176 ~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~-------~~~~~~~~~~--- 245 (938)
....++|.|..|+|||||++.++.... ....++.....+...+.++....+..-+.. ..+.......
T Consensus 139 ~Gq~i~I~G~sG~GKTtLl~~I~~~~~---~~~gvi~~iGer~~ev~~~~~~~l~~~~~~~tvvv~atsd~~~~~r~~a~ 215 (418)
T TIGR03498 139 RGQRLGIFAGSGVGKSTLLSMLARNTD---ADVVVIALVGERGREVREFLEDDLGEEGLKRSVVVVATSDESPLMRRQAA 215 (418)
T ss_pred CCcEEEEECCCCCChHHHHHHHhCCCC---CCEEEEEEEeeechHHHHHHHHhhhccccceeEEEEECCCCCHHHHHHHH
Confidence 346799999999999999998887421 122233323233334444555443332111 1111111111
Q ss_pred --HHHHHHHh--cCceEEEEEecCCC
Q 002308 246 --LISIDESI--AGKRFLLVLDDVWD 267 (938)
Q Consensus 246 --~~~l~~~l--~~~~~LlVlDdv~~ 267 (938)
...+.+++ +++++|+++||+.+
T Consensus 216 ~~a~~iAEyfrd~G~~Vll~~DslTr 241 (418)
T TIGR03498 216 YTATAIAEYFRDQGKDVLLLMDSVTR 241 (418)
T ss_pred HHHHHHHHHHHHcCCCEEEeccchhH
Confidence 12244444 47899999999843
No 446
>cd01136 ATPase_flagellum-secretory_path_III Flagellum-specific ATPase/type III secretory pathway virulence-related protein. This group of ATPases are responsible for the export of flagellum and virulence-related proteins. The bacterial flagellar motor is similar to the F0F1-ATPase, in that they both are proton driven rotary molecular devices. However, the main function of the bacterial flagellar motor is to rotate the flagellar filament for cell motility. Intracellular pathogens such as Salmonella and Chlamydia also have proteins which are similar to the flagellar-specific ATPase, but function in the secretion of virulence-related proteins via the type III secretory pathway.
Probab=93.96 E-value=0.28 Score=51.89 Aligned_cols=87 Identities=21% Similarity=0.206 Sum_probs=49.5
Q ss_pred CeEEEEEEccCCChHHHHHHHHhhhhhhhcccCeEEEEEeC-CCCCHHHHHHHHHHHhcC-------CCCCCCcHHH---
Q 002308 176 GLHIISIVGMGGIGKTTLAQLACNHVEVKREFDKTLWVCVS-ETFDEFRIAKAMLEALTG-------STSNLNALQS--- 244 (938)
Q Consensus 176 ~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~-~~~~~~~~~~~i~~~l~~-------~~~~~~~~~~--- 244 (938)
....++|.|..|+|||||.+.++.... -+..+...+. ...++.+........-.. ...+......
T Consensus 68 ~Gqri~I~G~sG~GKTtLl~~Ia~~~~----~~~~vi~~iGer~~ev~~~~~~~~~~~~l~rtvvv~~t~d~~~~~r~~~ 143 (326)
T cd01136 68 KGQRLGIFAGSGVGKSTLLGMIARGTT----ADVNVIALIGERGREVREFIEKDLGEEGLKRSVVVVATSDESPLLRVKA 143 (326)
T ss_pred CCcEEEEECCCCCChHHHHHHHhCCCC----CCEEEEEEEecCCccHHHHHHHHHhcCccceEEEEEcCCCCCHHHHHHH
Confidence 346789999999999999998887421 1233334443 344555555555443221 1111111111
Q ss_pred --HHHHHHHHh--cCceEEEEEecCC
Q 002308 245 --LLISIDESI--AGKRFLLVLDDVW 266 (938)
Q Consensus 245 --~~~~l~~~l--~~~~~LlVlDdv~ 266 (938)
..-.+.+++ +++.+|+++||+.
T Consensus 144 ~~~a~~~AEyfr~~g~~Vll~~Dslt 169 (326)
T cd01136 144 AYTATAIAEYFRDQGKDVLLLMDSLT 169 (326)
T ss_pred HHHHHHHHHHHHHcCCCeEEEeccch
Confidence 112233333 4899999999984
No 447
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=93.95 E-value=0.046 Score=53.73 Aligned_cols=24 Identities=38% Similarity=0.372 Sum_probs=21.7
Q ss_pred CeEEEEEEccCCChHHHHHHHHhh
Q 002308 176 GLHIISIVGMGGIGKTTLAQLACN 199 (938)
Q Consensus 176 ~~~vv~i~G~~GiGKTtLa~~v~~ 199 (938)
...+|+|.|++|+||||+|+.++.
T Consensus 2 ~~~ii~i~G~~GsGKsTl~~~l~~ 25 (188)
T TIGR01360 2 KCKIIFIVGGPGSGKGTQCEKIVE 25 (188)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 457899999999999999999886
No 448
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=93.93 E-value=0.49 Score=47.77 Aligned_cols=25 Identities=32% Similarity=0.428 Sum_probs=21.9
Q ss_pred CeEEEEEEccCCChHHHHHHHHhhh
Q 002308 176 GLHIISIVGMGGIGKTTLAQLACNH 200 (938)
Q Consensus 176 ~~~vv~i~G~~GiGKTtLa~~v~~~ 200 (938)
...+++|.|+.|.|||||++.++.-
T Consensus 29 ~G~~~~i~G~nGsGKSTLl~~i~G~ 53 (220)
T cd03245 29 AGEKVAIIGRVGSGKSTLLKLLAGL 53 (220)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 4568999999999999999998864
No 449
>PTZ00185 ATPase alpha subunit; Provisional
Probab=93.93 E-value=0.21 Score=55.22 Aligned_cols=91 Identities=21% Similarity=0.223 Sum_probs=51.0
Q ss_pred CeEEEEEEccCCChHHHHH-HHHhhhhhhh-----cccCeEEEEEeCCCCCHHHHHHHHHHHhc-CC-------CCCCCc
Q 002308 176 GLHIISIVGMGGIGKTTLA-QLACNHVEVK-----REFDKTLWVCVSETFDEFRIAKAMLEALT-GS-------TSNLNA 241 (938)
Q Consensus 176 ~~~vv~i~G~~GiGKTtLa-~~v~~~~~~~-----~~f~~~~wv~~~~~~~~~~~~~~i~~~l~-~~-------~~~~~~ 241 (938)
....++|.|..|+|||+|| ..+.+...+. .+-+.++++-+++..+.-.-+.+.+++-+ .. ..+...
T Consensus 188 RGQR~lIfGd~GtGKTtLAld~IinQ~~~~~~~~~~~~~v~VyvaIGeR~rEV~ei~~~L~e~GaL~~TvVV~AtAdep~ 267 (574)
T PTZ00185 188 RGQRELIVGDRQTGKTSIAVSTIINQVRINQQILSKNAVISIYVSIGQRCSNVARIHRLLRSYGALRYTTVMAATAAEPA 267 (574)
T ss_pred CCCEEEeecCCCCChHHHHHHHHHhhhhhccccccCCCCEEEEEEeccchHHHHHHHHHHHhcCCccceEEEEECCCCCH
Confidence 3467899999999999997 5566643221 23356778888775543322333333322 11 111111
Q ss_pred HHH-----HHHHHHHHh--cCceEEEEEecCC
Q 002308 242 LQS-----LLISIDESI--AGKRFLLVLDDVW 266 (938)
Q Consensus 242 ~~~-----~~~~l~~~l--~~~~~LlVlDdv~ 266 (938)
..+ ....+.+++ +++.+|+|+||+.
T Consensus 268 ~~r~~Apy~a~tiAEYFrd~GkdVLiv~DDLT 299 (574)
T PTZ00185 268 GLQYLAPYSGVTMGEYFMNRGRHCLCVYDDLS 299 (574)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCEEEEEcCch
Confidence 111 112233444 4789999999994
No 450
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=93.88 E-value=0.28 Score=50.74 Aligned_cols=27 Identities=26% Similarity=0.315 Sum_probs=24.0
Q ss_pred CCCeEEEEEEccCCChHHHHHHHHhhh
Q 002308 174 QKGLHIISIVGMGGIGKTTLAQLACNH 200 (938)
Q Consensus 174 ~~~~~vv~i~G~~GiGKTtLa~~v~~~ 200 (938)
..+..++.|.|.+|+|||||+..+.+.
T Consensus 101 ~~~~~~v~l~G~pGsGKTTLl~~l~~~ 127 (290)
T PRK10463 101 ARKQLVLNLVSSPGSGKTTLLTETLMR 127 (290)
T ss_pred hcCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 346899999999999999999999883
No 451
>KOG0728 consensus 26S proteasome regulatory complex, ATPase RPT6 [Posttranslational modification, protein turnover, chaperones]
Probab=93.87 E-value=1.8 Score=42.61 Aligned_cols=155 Identities=15% Similarity=0.179 Sum_probs=83.4
Q ss_pred eecc-hhhHHHHHHHHhccCcc-------cCCCeEEEEEEccCCChHHHHHHHHhhhhhhhcccCeEEEEEeCCCCCHHH
Q 002308 152 ICGR-VGERNALLSMLLCESSE-------QQKGLHIISIVGMGGIGKTTLAQLACNHVEVKREFDKTLWVCVSETFDEFR 223 (938)
Q Consensus 152 ~vGr-~~~~~~l~~~l~~~~~~-------~~~~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~ 223 (938)
++|. +..+++|.+.+.-+-.. +-.+++=+.++|++|.|||-||++|+++ ....|+.||.. +
T Consensus 148 MiGgLd~QIkeIkEVIeLPvKHPELF~aLGIaQPKGvlLygppgtGktLlaraVahh-------t~c~firvsgs----e 216 (404)
T KOG0728|consen 148 MIGGLDKQIKEIKEVIELPVKHPELFEALGIAQPKGVLLYGPPGTGKTLLARAVAHH-------TDCTFIRVSGS----E 216 (404)
T ss_pred HhccHHHHHHHHHHHHhccccCHHHHHhcCCCCCcceEEecCCCCchhHHHHHHHhh-------cceEEEEechH----H
Confidence 5664 66677776655432110 1235667899999999999999999984 34566777763 2
Q ss_pred HHHHHHHHhcCCCCCCCcHHHHHHHHHHHhcCceEEEEEecCCCC-----------Ccc---ChhHHHHhhhCC--CCCc
Q 002308 224 IAKAMLEALTGSTSNLNALQSLLISIDESIAGKRFLLVLDDVWDG-----------DYI---KWEPFYRCLKKG--LHGS 287 (938)
Q Consensus 224 ~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~-----------~~~---~~~~l~~~l~~~--~~gs 287 (938)
+.+..+ +.. ..-..++.-.-+ ...+-.|+.|.+++. +.. ..-++...+... ...-
T Consensus 217 lvqk~i----geg--srmvrelfvmar---ehapsiifmdeidsigs~r~e~~~ggdsevqrtmlellnqldgfeatkni 287 (404)
T KOG0728|consen 217 LVQKYI----GEG--SRMVRELFVMAR---EHAPSIIFMDEIDSIGSSRVESGSGGDSEVQRTMLELLNQLDGFEATKNI 287 (404)
T ss_pred HHHHHh----hhh--HHHHHHHHHHHH---hcCCceEeeecccccccccccCCCCccHHHHHHHHHHHHhccccccccce
Confidence 221111 100 011111111111 235677888877431 111 111222233322 3556
Q ss_pred EEEEEcCChhhhhhh-----cCCceEeCCCCChHHHHHHHHHhh
Q 002308 288 KILITTRKESIVSMM-----RSTDIISIEELAEEECWVLFKRLA 326 (938)
Q Consensus 288 ~ilvTtr~~~v~~~~-----~~~~~~~l~~L~~~~~~~lf~~~~ 326 (938)
+||.+|..-++.... ....-++..+-+++...+++.-+.
T Consensus 288 kvimatnridild~allrpgridrkiefp~p~e~ar~~ilkihs 331 (404)
T KOG0728|consen 288 KVIMATNRIDILDPALLRPGRIDRKIEFPPPNEEARLDILKIHS 331 (404)
T ss_pred EEEEeccccccccHhhcCCCcccccccCCCCCHHHHHHHHHHhh
Confidence 788877655544331 224567777777777777776553
No 452
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=93.85 E-value=0.29 Score=53.76 Aligned_cols=25 Identities=32% Similarity=0.393 Sum_probs=22.5
Q ss_pred CeEEEEEEccCCChHHHHHHHHhhh
Q 002308 176 GLHIISIVGMGGIGKTTLAQLACNH 200 (938)
Q Consensus 176 ~~~vv~i~G~~GiGKTtLa~~v~~~ 200 (938)
.+.+|.++|..|+||||++..++..
T Consensus 99 ~~~vi~lvG~~GvGKTTtaaKLA~~ 123 (429)
T TIGR01425 99 KQNVIMFVGLQGSGKTTTCTKLAYY 123 (429)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4689999999999999999998874
No 453
>PRK05922 type III secretion system ATPase; Validated
Probab=93.82 E-value=0.33 Score=53.37 Aligned_cols=87 Identities=17% Similarity=0.202 Sum_probs=49.3
Q ss_pred CeEEEEEEccCCChHHHHHHHHhhhhhhhcccCeEEEEEeCC-CCCHHHHHHHHHHHhcCCC-------CCCCcHHH---
Q 002308 176 GLHIISIVGMGGIGKTTLAQLACNHVEVKREFDKTLWVCVSE-TFDEFRIAKAMLEALTGST-------SNLNALQS--- 244 (938)
Q Consensus 176 ~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~-~~~~~~~~~~i~~~l~~~~-------~~~~~~~~--- 244 (938)
....++|.|..|+|||||.+.+.... ..+..+++.+++ ...+.+.+.+......... .+......
T Consensus 156 ~GqrigI~G~nG~GKSTLL~~Ia~~~----~~d~gvi~liGerg~ev~eyl~q~~~~~~~~rTVlv~atsd~~~~~r~~a 231 (434)
T PRK05922 156 KGQRIGVFSEPGSGKSSLLSTIAKGS----KSTINVIALIGERGREVREYIEQHKEGLAAQRTIIIASPAHETAPTKVIA 231 (434)
T ss_pred CCcEEEEECCCCCChHHHHHHHhccC----CCCceEEEEeCCCCchHHHHHHHHHhhccccceEEEEECCCCCHHHHHHH
Confidence 34568999999999999999998732 123334444433 3334455545443332211 11111111
Q ss_pred --HHHHHHHHh--cCceEEEEEecCC
Q 002308 245 --LLISIDESI--AGKRFLLVLDDVW 266 (938)
Q Consensus 245 --~~~~l~~~l--~~~~~LlVlDdv~ 266 (938)
..-.+.+++ +++++|+++||+.
T Consensus 232 ~~~a~tiAEyfrd~G~~VLl~~DslT 257 (434)
T PRK05922 232 GRAAMTIAEYFRDQGHRVLFIMDSLS 257 (434)
T ss_pred HHHHHHHHHHHHHcCCCEEEeccchh
Confidence 122244444 4899999999994
No 454
>cd01132 F1_ATPase_alpha F1 ATP synthase alpha, central domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The alpha subunit of the F1 ATP synthase can bind nucleotides, but is non-catalytic.
Probab=93.80 E-value=0.12 Score=52.85 Aligned_cols=88 Identities=20% Similarity=0.194 Sum_probs=48.7
Q ss_pred CeEEEEEEccCCChHHHHH-HHHhhhhhhhcccCeE-EEEEeCCCC-CHHHHHHHHHHHhcCC-------CCCCCcHHH-
Q 002308 176 GLHIISIVGMGGIGKTTLA-QLACNHVEVKREFDKT-LWVCVSETF-DEFRIAKAMLEALTGS-------TSNLNALQS- 244 (938)
Q Consensus 176 ~~~vv~i~G~~GiGKTtLa-~~v~~~~~~~~~f~~~-~wv~~~~~~-~~~~~~~~i~~~l~~~-------~~~~~~~~~- 244 (938)
..+.++|.|.+|+|||+|| ..+.+. ..-+.+ +++-+.+.. .+.++.+++...-... ..+......
T Consensus 68 rGQr~~Ifg~~g~GKt~L~l~~i~~~----~~~~v~~V~~~iGer~~ev~e~~~~~~~~~~~~~tvvv~~t~d~~~~~r~ 143 (274)
T cd01132 68 RGQRELIIGDRQTGKTAIAIDTIINQ----KGKKVYCIYVAIGQKASTVAQVVKTLEEHGAMEYTIVVAATASDPAPLQY 143 (274)
T ss_pred cCCEEEeeCCCCCCccHHHHHHHHHh----cCCCeEEEEEecccchHHHHHHHHHHHhcCccceeEEEEeCCCCchhHHH
Confidence 3457899999999999996 555542 122333 566665543 4455666555432111 111111111
Q ss_pred ----HHHHHHHHh--cCceEEEEEecCCC
Q 002308 245 ----LLISIDESI--AGKRFLLVLDDVWD 267 (938)
Q Consensus 245 ----~~~~l~~~l--~~~~~LlVlDdv~~ 267 (938)
..-.+.+++ +++.+|+|+||+.+
T Consensus 144 ~a~~~a~aiAE~fr~~G~~Vlvl~DslTr 172 (274)
T cd01132 144 LAPYTGCAMGEYFMDNGKHALIIYDDLSK 172 (274)
T ss_pred HHHHHHHHHHHHHHHCCCCEEEEEcChHH
Confidence 112233333 47899999999943
No 455
>COG5635 Predicted NTPase (NACHT family) [Signal transduction mechanisms]
Probab=93.80 E-value=0.13 Score=62.75 Aligned_cols=140 Identities=16% Similarity=0.171 Sum_probs=74.8
Q ss_pred CeEEEEEEccCCChHHHHHHHHhhhhhhhc--ccCeEEEEEeCCC----CCHH--HHHHHHHHHhcCCCCCCCcHHHHHH
Q 002308 176 GLHIISIVGMGGIGKTTLAQLACNHVEVKR--EFDKTLWVCVSET----FDEF--RIAKAMLEALTGSTSNLNALQSLLI 247 (938)
Q Consensus 176 ~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~--~f~~~~wv~~~~~----~~~~--~~~~~i~~~l~~~~~~~~~~~~~~~ 247 (938)
...-+.|+|.+|.||||+.+.++-....+. .=+..+++.+... .... .+..-+...+....... +...
T Consensus 221 ~~~~~~Ilg~pGsGKTtfl~~lA~~~~~~~~~~~~vpi~~~l~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~----~~~~ 296 (824)
T COG5635 221 KYAKLLILGAPGSGKTTFLQRLALWLAQRTLEPEDVPIFLLLNAFALARKFEKQLSLIDYLAEELFSQGIAK----QLIE 296 (824)
T ss_pred hhhheeeecCCCCCceehHHHHHHHhccCcCCcccCceeeechhHHHhhhhHhhccHHHHHHHHHhccCCcc----hhhH
Confidence 344789999999999999998877521111 1133444443210 0111 23333333333222111 1111
Q ss_pred HHHHHhcCceEEEEEecCCCCCccChhHH---HHhhhCCCCCcEEEEEcCChhhhhhhcCCceEeCCCCChHHHH
Q 002308 248 SIDESIAGKRFLLVLDDVWDGDYIKWEPF---YRCLKKGLHGSKILITTRKESIVSMMRSTDIISIEELAEEECW 319 (938)
Q Consensus 248 ~l~~~l~~~~~LlVlDdv~~~~~~~~~~l---~~~l~~~~~gs~ilvTtr~~~v~~~~~~~~~~~l~~L~~~~~~ 319 (938)
...+.++..++++.+|.++......-... ...+-..-+.+.+|+|+|....-.....-..+++..+.++.-.
T Consensus 297 ~~~e~l~~g~~llLlDGlDe~~~~~~~~~~~~i~~f~~~~~~~~~iltcR~~~~~~~~~~f~~~ei~~~~~~~i~ 371 (824)
T COG5635 297 AHQELLKTGKLLLLLDGLDELEPKNQRALIREINKFLQEYPDAQVLLTCRPDTYKEEFKGFAVFEIYKFLDLQIN 371 (824)
T ss_pred HHHHHHhccchhhHhhccchhhhhhHHHHHHHHHHHhhhccCCeEEEEeccchhhhhhhhhhhccchhhhHHHHH
Confidence 22567888999999999865432221111 1122223468899999987654444333445566666655544
No 456
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=93.79 E-value=0.41 Score=49.31 Aligned_cols=25 Identities=28% Similarity=0.484 Sum_probs=22.1
Q ss_pred CeEEEEEEccCCChHHHHHHHHhhh
Q 002308 176 GLHIISIVGMGGIGKTTLAQLACNH 200 (938)
Q Consensus 176 ~~~vv~i~G~~GiGKTtLa~~v~~~ 200 (938)
...+++|.|+.|.|||||++.++..
T Consensus 29 ~Ge~~~I~G~NGsGKSTLl~~i~Gl 53 (251)
T PRK09544 29 PGKILTLLGPNGAGKSTLVRVVLGL 53 (251)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCC
Confidence 3468999999999999999999874
No 457
>COG2401 ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only]
Probab=93.79 E-value=0.13 Score=54.39 Aligned_cols=157 Identities=18% Similarity=0.217 Sum_probs=82.8
Q ss_pred ceecchhhHHHHHHHHhccCcc-----------cCCCeEEEEEEccCCChHHHHHHHHhhhhhhhc--cc---CeEEEEE
Q 002308 151 EICGRVGERNALLSMLLCESSE-----------QQKGLHIISIVGMGGIGKTTLAQLACNHVEVKR--EF---DKTLWVC 214 (938)
Q Consensus 151 ~~vGr~~~~~~l~~~l~~~~~~-----------~~~~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~--~f---~~~~wv~ 214 (938)
...|-..+...|.+.+-..... .-...-+++|+|..|+||||+.+.+........ .| ...+-+.
T Consensus 372 d~~~lp~e~~~IleSFGv~~r~ieryvlr~vNL~ikpGdvvaVvGqSGaGKttllRmi~G~~~~~~ee~y~p~sg~v~vp 451 (593)
T COG2401 372 DIKGLPNEFQDILESFGVRQRVIERYVLRNLNLEIKPGDVVAVVGQSGAGKTTLLRMILGAQKGRGEEKYRPDSGKVEVP 451 (593)
T ss_pred ecccCChHHHHHHHHhcchheeeeeeeeeceeeEecCCCeEEEEecCCCCcchHHHHHHHHhhcccccccCCCCCceecc
Confidence 3455566777777766432110 012346899999999999999999877422111 11 1111111
Q ss_pred e-----------CCCCCHHHHHHHHHHHhc-------------CC--------CCCCCcHHHHHHHHHHHhcCceEEEEE
Q 002308 215 V-----------SETFDEFRIAKAMLEALT-------------GS--------TSNLNALQSLLISIDESIAGKRFLLVL 262 (938)
Q Consensus 215 ~-----------~~~~~~~~~~~~i~~~l~-------------~~--------~~~~~~~~~~~~~l~~~l~~~~~LlVl 262 (938)
. ...++...++.++.+..+ .. ..+..+.+.-...|.+.+..+.-+++.
T Consensus 452 ~nt~~a~iPge~Ep~f~~~tilehl~s~tGD~~~AveILnraGlsDAvlyRr~f~ELStGQKeR~KLAkllaerpn~~~i 531 (593)
T COG2401 452 KNTVSALIPGEYEPEFGEVTILEHLRSKTGDLNAAVEILNRAGLSDAVLYRRKFSELSTGQKERAKLAKLLAERPNVLLI 531 (593)
T ss_pred ccchhhccCcccccccCchhHHHHHhhccCchhHHHHHHHhhccchhhhhhccHhhcCcchHHHHHHHHHHhcCCCcEEh
Confidence 0 112222233433333222 11 112233334455677778888889999
Q ss_pred ecCCCC-CccChhHHHHhhhCC--CCCcEEEEEcCChhhhhhhcCCce
Q 002308 263 DDVWDG-DYIKWEPFYRCLKKG--LHGSKILITTRKESIVSMMRSTDI 307 (938)
Q Consensus 263 Ddv~~~-~~~~~~~l~~~l~~~--~~gs~ilvTtr~~~v~~~~~~~~~ 307 (938)
|.+... |...-..+...+... ..|+.+++.|+.+++.+....+..
T Consensus 532 DEF~AhLD~~TA~rVArkiselaRe~giTlivvThrpEv~~AL~PD~l 579 (593)
T COG2401 532 DEFAAHLDELTAVRVARKISELAREAGITLIVVTHRPEVGNALRPDTL 579 (593)
T ss_pred hhhhhhcCHHHHHHHHHHHHHHHHHhCCeEEEEecCHHHHhccCCcee
Confidence 987431 111112233333332 257777777777888877655443
No 458
>PRK08927 fliI flagellum-specific ATP synthase; Validated
Probab=93.76 E-value=0.33 Score=53.45 Aligned_cols=88 Identities=23% Similarity=0.240 Sum_probs=50.9
Q ss_pred CeEEEEEEccCCChHHHHHHHHhhhhhhhcccCeEEEEEeCCCC-CHHHHHHHHHHHhcCC-------CCCCCcHHH---
Q 002308 176 GLHIISIVGMGGIGKTTLAQLACNHVEVKREFDKTLWVCVSETF-DEFRIAKAMLEALTGS-------TSNLNALQS--- 244 (938)
Q Consensus 176 ~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~i~~~l~~~-------~~~~~~~~~--- 244 (938)
....++|.|..|+|||||++.+++... -+.++++-+++.. .+.+...+.+..-+.. ..+......
T Consensus 157 ~Gqri~I~G~sG~GKTtLL~~I~~~~~----~d~~v~~~iGER~rEv~ef~~~~l~~~~l~rsvvv~atsd~~~~~r~~a 232 (442)
T PRK08927 157 RGQRMGIFAGSGVGKSVLLSMLARNAD----ADVSVIGLIGERGREVQEFLQDDLGPEGLARSVVVVATSDEPALMRRQA 232 (442)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhccC----CCEEEEEEEecCcHHHHHHHHHHhhccCceeEEEEEECCCCCHHHHHHH
Confidence 446889999999999999999887421 2445556665543 3334444444332111 111111111
Q ss_pred --HHHHHHHHh--cCceEEEEEecCCC
Q 002308 245 --LLISIDESI--AGKRFLLVLDDVWD 267 (938)
Q Consensus 245 --~~~~l~~~l--~~~~~LlVlDdv~~ 267 (938)
..-.+.+++ +++++|+++||+.+
T Consensus 233 ~~~a~tiAEyfrd~G~~Vll~~DslTr 259 (442)
T PRK08927 233 AYLTLAIAEYFRDQGKDVLCLMDSVTR 259 (442)
T ss_pred HHHHHHHHHHHHHCCCcEEEEEeCcHH
Confidence 112234444 48999999999943
No 459
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=93.75 E-value=0.12 Score=46.99 Aligned_cols=60 Identities=22% Similarity=0.405 Sum_probs=21.4
Q ss_pred HhccCCCeeEEecCCCCCCcccCccccccCCCCeeeecCCccccccc-cccCCCCccEEEcCC
Q 002308 563 LFRESTSLRALDFPSFYLPLEIPRNIEKLVHLRYLNLSDQKIKKLPE-TLCELYNLEKLDISG 624 (938)
Q Consensus 563 ~~~~~~~Lr~L~L~~n~~~~~lp~~~~~l~~L~~L~L~~~~i~~lp~-~i~~l~~L~~L~l~~ 624 (938)
.|..++.|+.+.+.++ +...-...|.++..|+++.+.+ .+..++. .+..+++|+.+++..
T Consensus 30 ~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l~~i~~~~ 90 (129)
T PF13306_consen 30 AFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNLKNIDIPS 90 (129)
T ss_dssp TTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTECEEEETT
T ss_pred hccccccccccccccc-ccccceeeeecccccccccccc-cccccccccccccccccccccCc
Confidence 3444545555555443 1111122344444455555543 2332222 233344555555443
No 460
>TIGR01818 ntrC nitrogen regulation protein NR(I). This model represents NtrC, a DNA-binding response regulator that is phosphorylated by NtrB and interacts with sigma-54. NtrC usually controls the expression of glutamine synthase, GlnA, and may be called GlnL, GlnG, etc.
Probab=93.75 E-value=0.35 Score=55.29 Aligned_cols=135 Identities=16% Similarity=0.141 Sum_probs=71.5
Q ss_pred CceecchhhHHHHHHHHhccCcccCCCeEEEEEEccCCChHHHHHHHHhhhhhhhcccCeEEEEEeCCCCCHHHHHHHHH
Q 002308 150 EEICGRVGERNALLSMLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNHVEVKREFDKTLWVCVSETFDEFRIAKAML 229 (938)
Q Consensus 150 ~~~vGr~~~~~~l~~~l~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 229 (938)
..++|......++...+.... .....+.|.|..|+||+++|+.+.... .......+-+++..- ..+.+...+
T Consensus 134 ~~lig~s~~~~~v~~~i~~~a----~~~~~vli~Ge~GtGK~~~A~~ih~~~--~~~~~~~~~~~c~~~--~~~~~~~~l 205 (463)
T TIGR01818 134 AELIGEAPAMQEVFRAIGRLS----RSDITVLINGESGTGKELVARALHRHS--PRANGPFIALNMAAI--PKDLIESEL 205 (463)
T ss_pred cceeecCHHHHHHHHHHHHHh----CcCCeEEEECCCCCCHHHHHHHHHHhC--CCCCCCeEEEeCCCC--CHHHHHHHh
Confidence 357888777777776665432 133467899999999999999987732 111223334444432 223222222
Q ss_pred HHhcCCCCCCCcHHHHHHHHHHHhcCceEEEEEecCCCCCccChhHHHHhhhCCC-----------CCcEEEEEcCCh
Q 002308 230 EALTGSTSNLNALQSLLISIDESIAGKRFLLVLDDVWDGDYIKWEPFYRCLKKGL-----------HGSKILITTRKE 296 (938)
Q Consensus 230 ~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~~~~~~~l~~~l~~~~-----------~gs~ilvTtr~~ 296 (938)
++........... ...........-.|+||++...+......+...+..+. .+.+||+||...
T Consensus 206 --fg~~~~~~~~~~~--~~~g~~~~a~~gtl~l~ei~~l~~~~q~~ll~~l~~~~~~~~~~~~~~~~~~rii~~~~~~ 279 (463)
T TIGR01818 206 --FGHEKGAFTGANT--RRQGRFEQADGGTLFLDEIGDMPLDAQTRLLRVLADGEFYRVGGRTPIKVDVRIVAATHQN 279 (463)
T ss_pred --cCCCCCCCCCccc--CCCCcEEECCCCeEEEEchhhCCHHHHHHHHHHHhcCcEEECCCCceeeeeeEEEEeCCCC
Confidence 2211100000000 00000001123348899998876666667777766432 245888888643
No 461
>PRK13765 ATP-dependent protease Lon; Provisional
Probab=93.74 E-value=0.1 Score=60.63 Aligned_cols=75 Identities=13% Similarity=0.122 Sum_probs=54.8
Q ss_pred CCceecchhhHHHHHHHHhccCcccCCCeEEEEEEccCCChHHHHHHHHhhhhhhhcccCeEEEEEeCCCCCHHHHHHHH
Q 002308 149 EEEICGRVGERNALLSMLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNHVEVKREFDKTLWVCVSETFDEFRIAKAM 228 (938)
Q Consensus 149 ~~~~vGr~~~~~~l~~~l~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i 228 (938)
-+.++|.+..++.+...+... +.+.++|++|+||||+|+.+.... ...+++..+|..- ...+...+++.+
T Consensus 30 ~~~vigq~~a~~~L~~~~~~~--------~~~l~~G~~G~GKttla~~l~~~l-~~~~~~~~~~~~n-p~~~~~~~~~~v 99 (637)
T PRK13765 30 IDQVIGQEHAVEVIKKAAKQR--------RHVMMIGSPGTGKSMLAKAMAELL-PKEELQDILVYPN-PEDPNNPKIRTV 99 (637)
T ss_pred HHHcCChHHHHHHHHHHHHhC--------CeEEEECCCCCcHHHHHHHHHHHc-ChHhHHHheEeeC-CCcchHHHHHHH
Confidence 356899998888888877532 368999999999999999998742 2334577778655 344666777777
Q ss_pred HHHhc
Q 002308 229 LEALT 233 (938)
Q Consensus 229 ~~~l~ 233 (938)
+.+++
T Consensus 100 ~~~~G 104 (637)
T PRK13765 100 PAGKG 104 (637)
T ss_pred HHhcC
Confidence 76655
No 462
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.73 E-value=0.3 Score=48.07 Aligned_cols=24 Identities=29% Similarity=0.448 Sum_probs=21.6
Q ss_pred CeEEEEEEccCCChHHHHHHHHhh
Q 002308 176 GLHIISIVGMGGIGKTTLAQLACN 199 (938)
Q Consensus 176 ~~~vv~i~G~~GiGKTtLa~~v~~ 199 (938)
...+++|.|+.|.|||||++.++.
T Consensus 32 ~Ge~~~l~G~nGsGKSTLl~~l~G 55 (192)
T cd03232 32 PGTLTALMGESGAGKTTLLDVLAG 55 (192)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhC
Confidence 346899999999999999999985
No 463
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=93.69 E-value=0.051 Score=50.38 Aligned_cols=20 Identities=45% Similarity=0.753 Sum_probs=18.3
Q ss_pred EEEEEccCCChHHHHHHHHh
Q 002308 179 IISIVGMGGIGKTTLAQLAC 198 (938)
Q Consensus 179 vv~i~G~~GiGKTtLa~~v~ 198 (938)
.|+|.|.+|+||||++..+.
T Consensus 2 ~I~ITGTPGvGKTT~~~~L~ 21 (180)
T COG1936 2 LIAITGTPGVGKTTVCKLLR 21 (180)
T ss_pred eEEEeCCCCCchHHHHHHHH
Confidence 58999999999999999876
No 464
>PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function. It is found in some proteins described as Schlafen family members, which may have a role in hematopoeitic cell differentiation [].
Probab=93.69 E-value=0.22 Score=54.38 Aligned_cols=41 Identities=32% Similarity=0.471 Sum_probs=31.4
Q ss_pred EEEEEEccCCChHHHHHHHHhhhhhhhcccCeEEEEEeCCC
Q 002308 178 HIISIVGMGGIGKTTLAQLACNHVEVKREFDKTLWVCVSET 218 (938)
Q Consensus 178 ~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~ 218 (938)
.++.|.|.||+|||.||..++...........+++++....
T Consensus 2 ~v~~I~G~aGTGKTvla~~l~~~l~~~~~~~~~~~l~~n~~ 42 (352)
T PF09848_consen 2 QVILITGGAGTGKTVLALNLAKELQNSEEGKKVLYLCGNHP 42 (352)
T ss_pred eEEEEEecCCcCHHHHHHHHHHHhhccccCCceEEEEecch
Confidence 57899999999999999999995411445566777776653
No 465
>TIGR00764 lon_rel lon-related putative ATP-dependent protease. Members of this family from Pyrococcus horikoshii and Pyrococcus abyssi each contain a predicted intein.
Probab=93.68 E-value=0.14 Score=59.72 Aligned_cols=73 Identities=12% Similarity=0.153 Sum_probs=48.7
Q ss_pred CceecchhhHHHHHHHHhccCcccCCCeEEEEEEccCCChHHHHHHHHhhhhhhhc-ccCeEEEEEeCCCCCHHHHHHHH
Q 002308 150 EEICGRVGERNALLSMLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNHVEVKR-EFDKTLWVCVSETFDEFRIAKAM 228 (938)
Q Consensus 150 ~~~vGr~~~~~~l~~~l~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~-~f~~~~wv~~~~~~~~~~~~~~i 228 (938)
+.++|.++..+.+...+... +.+.++|++|+||||+|+.+... ... .|...+++. ....+...++..+
T Consensus 18 ~~viG~~~a~~~l~~a~~~~--------~~~ll~G~pG~GKT~la~~la~~--l~~~~~~~~~~~~-n~~~~~~~~~~~v 86 (608)
T TIGR00764 18 DQVIGQEEAVEIIKKAAKQK--------RNVLLIGEPGVGKSMLAKAMAEL--LPDEELEDILVYP-NPEDPNMPRIVEV 86 (608)
T ss_pred hhccCHHHHHHHHHHHHHcC--------CCEEEECCCCCCHHHHHHHHHHH--cCchhheeEEEEe-CCCCCchHHHHHH
Confidence 46899998888888877632 25669999999999999999974 332 333333332 2223445557777
Q ss_pred HHHhc
Q 002308 229 LEALT 233 (938)
Q Consensus 229 ~~~l~ 233 (938)
+..++
T Consensus 87 ~~~~g 91 (608)
T TIGR00764 87 PAGEG 91 (608)
T ss_pred HHhhc
Confidence 76665
No 466
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=93.67 E-value=0.62 Score=46.78 Aligned_cols=25 Identities=28% Similarity=0.355 Sum_probs=22.0
Q ss_pred CeEEEEEEccCCChHHHHHHHHhhh
Q 002308 176 GLHIISIVGMGGIGKTTLAQLACNH 200 (938)
Q Consensus 176 ~~~vv~i~G~~GiGKTtLa~~v~~~ 200 (938)
...+++|.|..|.|||||++.++..
T Consensus 36 ~Ge~~~i~G~nGsGKSTLl~~i~G~ 60 (214)
T PRK13543 36 AGEALLVQGDNGAGKTTLLRVLAGL 60 (214)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCC
Confidence 3468999999999999999999874
No 467
>COG4240 Predicted kinase [General function prediction only]
Probab=93.65 E-value=0.31 Score=47.14 Aligned_cols=83 Identities=16% Similarity=0.153 Sum_probs=52.5
Q ss_pred CCCeEEEEEEccCCChHHHHHHHHhhhhhhhcccCeEEEEEeCCCCCHHHHHHHHHHHhc-----CCCCCCCcHHHHHHH
Q 002308 174 QKGLHIISIVGMGGIGKTTLAQLACNHVEVKREFDKTLWVCVSETFDEFRIAKAMLEALT-----GSTSNLNALQSLLIS 248 (938)
Q Consensus 174 ~~~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~-----~~~~~~~~~~~~~~~ 248 (938)
.+.+-+++|.|+-|+||||++..+++....+.. ..++..+...-.-..+-.-.++++.. ...++..+..-....
T Consensus 47 ~grPli~gisGpQGSGKStls~~i~~~L~~kg~-ert~~lSLDDlYlthadrl~La~q~npllq~RGlpGTHD~tlglnV 125 (300)
T COG4240 47 RGRPLIVGISGPQGSGKSTLSALIVRLLAAKGL-ERTATLSLDDLYLTHADRLRLARQVNPLLQTRGLPGTHDPTLGLNV 125 (300)
T ss_pred cCCceEEEeecCCCCchhhHHHHHHHHHHHhcc-cceEEeehhhhhcchHHHHHHHHhcCchhcccCCCCCCchHHHHHH
Confidence 346789999999999999999999985433332 46666665443333333444555532 122344556666677
Q ss_pred HHHHhcCce
Q 002308 249 IDESIAGKR 257 (938)
Q Consensus 249 l~~~l~~~~ 257 (938)
+....+++.
T Consensus 126 Lnai~~g~~ 134 (300)
T COG4240 126 LNAIARGGP 134 (300)
T ss_pred HHHHhcCCC
Confidence 777777663
No 468
>TIGR03575 selen_PSTK_euk L-seryl-tRNA(Sec) kinase, eukaryotic. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents eukaryotic proteins with this activity.
Probab=93.63 E-value=0.26 Score=52.51 Aligned_cols=22 Identities=27% Similarity=0.424 Sum_probs=19.6
Q ss_pred EEEEccCCChHHHHHHHHhhhh
Q 002308 180 ISIVGMGGIGKTTLAQLACNHV 201 (938)
Q Consensus 180 v~i~G~~GiGKTtLa~~v~~~~ 201 (938)
+++.|++|.||||+++.+....
T Consensus 2 ~~l~Gl~GaGKST~~~~l~~~l 23 (340)
T TIGR03575 2 CVLCGLPAAGKSTLARSLSATL 23 (340)
T ss_pred eEEECCCCCCHHHHHHHHHHHH
Confidence 6789999999999999998753
No 469
>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+). This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.
Probab=93.63 E-value=0.046 Score=52.89 Aligned_cols=22 Identities=45% Similarity=0.567 Sum_probs=20.0
Q ss_pred EEEEEccCCChHHHHHHHHhhh
Q 002308 179 IISIVGMGGIGKTTLAQLACNH 200 (938)
Q Consensus 179 vv~i~G~~GiGKTtLa~~v~~~ 200 (938)
+|+|.|.+|+||||+|+.+...
T Consensus 1 ii~i~G~sgsGKTtla~~l~~~ 22 (187)
T cd02024 1 IVGISGVTNSGKTTLAKLLQRI 22 (187)
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999999874
No 470
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=93.61 E-value=0.046 Score=53.47 Aligned_cols=21 Identities=24% Similarity=0.358 Sum_probs=19.4
Q ss_pred EEEEEccCCChHHHHHHHHhh
Q 002308 179 IISIVGMGGIGKTTLAQLACN 199 (938)
Q Consensus 179 vv~i~G~~GiGKTtLa~~v~~ 199 (938)
+|.|.|++|+||||+|+.++.
T Consensus 1 ~i~i~G~pGsGKst~a~~la~ 21 (183)
T TIGR01359 1 VVFVLGGPGSGKGTQCAKIVE 21 (183)
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 588999999999999999877
No 471
>PRK15453 phosphoribulokinase; Provisional
Probab=93.61 E-value=0.43 Score=48.85 Aligned_cols=77 Identities=21% Similarity=0.110 Sum_probs=42.6
Q ss_pred CeEEEEEEccCCChHHHHHHHHhhhhhhhcccCeEEEEEeCCCC--CHHHHHHHHHH--Hhc--CCC--CCCCcHHHHHH
Q 002308 176 GLHIISIVGMGGIGKTTLAQLACNHVEVKREFDKTLWVCVSETF--DEFRIAKAMLE--ALT--GST--SNLNALQSLLI 247 (938)
Q Consensus 176 ~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~--~~~~~~~~i~~--~l~--~~~--~~~~~~~~~~~ 247 (938)
...+|+|.|.+|+||||+|+.+... .+..=..++.++...-. +....-..+.. .-+ -.. ++..+.+.+.+
T Consensus 4 k~piI~ItG~SGsGKTTva~~l~~i--f~~~~~~~~vi~~D~yh~ydr~~~~~~~~~~~r~g~nfdhf~PdAnd~dlL~~ 81 (290)
T PRK15453 4 KHPIIAVTGSSGAGTTTVKRAFEKI--FRRENINAAVVEGDSFHRYTRPEMKAAIAKARAAGRHFSHFGPEANLFDELEQ 81 (290)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHH--HhhcCCCeEEEecccccccChhhHhhhhHHHHhcCCCCCCCCCCcccHHHHHH
Confidence 4579999999999999999998863 22211124444433222 33232222211 111 112 44566677777
Q ss_pred HHHHHhc
Q 002308 248 SIDESIA 254 (938)
Q Consensus 248 ~l~~~l~ 254 (938)
.++....
T Consensus 82 ~l~~l~~ 88 (290)
T PRK15453 82 LFREYGE 88 (290)
T ss_pred HHHHHhc
Confidence 7776554
No 472
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=93.60 E-value=0.054 Score=52.40 Aligned_cols=23 Identities=26% Similarity=0.351 Sum_probs=20.9
Q ss_pred EEEEEEccCCChHHHHHHHHhhh
Q 002308 178 HIISIVGMGGIGKTTLAQLACNH 200 (938)
Q Consensus 178 ~vv~i~G~~GiGKTtLa~~v~~~ 200 (938)
++|.+.|++|+||||+|+.+...
T Consensus 3 ~~i~l~G~~gsGKst~a~~l~~~ 25 (175)
T cd00227 3 RIIILNGGSSAGKSSIARALQSV 25 (175)
T ss_pred CEEEEECCCCCCHHHHHHHHHHh
Confidence 58999999999999999999773
No 473
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=93.60 E-value=0.32 Score=50.23 Aligned_cols=128 Identities=15% Similarity=0.096 Sum_probs=64.6
Q ss_pred hHHHHHHHHhccCcccCCCeEEEEEEccCCChHHHHHHHHhhhhhhhcccCeEEEEEeCCCCCHHHHHHHHHHHhcCC-C
Q 002308 158 ERNALLSMLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNHVEVKREFDKTLWVCVSETFDEFRIAKAMLEALTGS-T 236 (938)
Q Consensus 158 ~~~~l~~~l~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~-~ 236 (938)
..+.+...+.. .....-++|.|+.|.|||||.+.++.. .. .....+++.-..-..+ +-..+++.....- .
T Consensus 97 ~~~~~l~~l~~-----~~~~~~~~i~g~~g~GKttl~~~l~~~--~~-~~~G~i~~~g~~v~~~-d~~~ei~~~~~~~~q 167 (270)
T TIGR02858 97 AADKLLPYLVR-----NNRVLNTLIISPPQCGKTTLLRDLARI--LS-TGISQLGLRGKKVGIV-DERSEIAGCVNGVPQ 167 (270)
T ss_pred cHHHHHHHHHh-----CCCeeEEEEEcCCCCCHHHHHHHHhCc--cC-CCCceEEECCEEeecc-hhHHHHHHHhccccc
Confidence 34445555543 224578999999999999999999884 22 2233334321110000 1112333222211 0
Q ss_pred C------CC-CcHHHHHHHHHHHhc-CceEEEEEecCCCCCccChhHHHHhhhCCCCCcEEEEEcCChhhhh
Q 002308 237 S------NL-NALQSLLISIDESIA-GKRFLLVLDDVWDGDYIKWEPFYRCLKKGLHGSKILITTRKESIVS 300 (938)
Q Consensus 237 ~------~~-~~~~~~~~~l~~~l~-~~~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtr~~~v~~ 300 (938)
. +. ..... ..-+...+. ..+=++++|.+... ..+..+...+. .|..||+||-+..+..
T Consensus 168 ~~~~~r~~v~~~~~k-~~~~~~~i~~~~P~villDE~~~~--e~~~~l~~~~~---~G~~vI~ttH~~~~~~ 233 (270)
T TIGR02858 168 HDVGIRTDVLDGCPK-AEGMMMLIRSMSPDVIVVDEIGRE--EDVEALLEALH---AGVSIIATAHGRDVED 233 (270)
T ss_pred ccccccccccccchH-HHHHHHHHHhCCCCEEEEeCCCcH--HHHHHHHHHHh---CCCEEEEEechhHHHH
Confidence 0 00 11111 112222222 46779999998543 23444444442 4777999998765543
No 474
>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
Probab=93.60 E-value=0.13 Score=50.17 Aligned_cols=41 Identities=34% Similarity=0.468 Sum_probs=27.4
Q ss_pred EEEEEccCCChHHHHHHHHhhhhhhhcccCeEEEEEeCCCCC
Q 002308 179 IISIVGMGGIGKTTLAQLACNHVEVKREFDKTLWVCVSETFD 220 (938)
Q Consensus 179 vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~ 220 (938)
.|+|+|-||+||||+|........-++.| .+.-|++..+++
T Consensus 2 kIaI~GKGG~GKTtiaalll~~l~~~~~~-~VLvVDaDpd~n 42 (255)
T COG3640 2 KIAITGKGGVGKTTIAALLLKRLLSKGGY-NVLVVDADPDSN 42 (255)
T ss_pred eEEEecCCCccHHHHHHHHHHHHHhcCCc-eEEEEeCCCCCC
Confidence 58999999999999999855532222223 355566555554
No 475
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=93.56 E-value=0.12 Score=47.51 Aligned_cols=39 Identities=23% Similarity=0.353 Sum_probs=27.7
Q ss_pred EEEEEEccCCChHHHHHHHHhhhhhhhcccCeEEEEEeCC
Q 002308 178 HIISIVGMGGIGKTTLAQLACNHVEVKREFDKTLWVCVSE 217 (938)
Q Consensus 178 ~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~ 217 (938)
++|.|+|..|+|||||++.+.+.. .+..+...++.+...
T Consensus 1 pvv~VvG~~~sGKTTl~~~Li~~l-~~~g~~v~~ik~~~~ 39 (140)
T PF03205_consen 1 PVVQVVGPKNSGKTTLIRKLINEL-KRRGYRVAVIKHTDH 39 (140)
T ss_dssp -EEEEEESTTSSHHHHHHHHHHHH-HHTT--EEEEEE-ST
T ss_pred CEEEEECCCCCCHHHHHHHHHHHH-hHcCCceEEEEEccC
Confidence 479999999999999999999963 334555555666554
No 476
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.55 E-value=0.88 Score=46.41 Aligned_cols=55 Identities=15% Similarity=0.171 Sum_probs=32.3
Q ss_pred HHHHHHhcCceEEEEEecCCC-CCccChhHHHHhhhCCCCCcEEEEEcCChhhhhh
Q 002308 247 ISIDESIAGKRFLLVLDDVWD-GDYIKWEPFYRCLKKGLHGSKILITTRKESIVSM 301 (938)
Q Consensus 247 ~~l~~~l~~~~~LlVlDdv~~-~~~~~~~~l~~~l~~~~~gs~ilvTtr~~~v~~~ 301 (938)
-.+.+.+-.++-++++|+--. -|......+...+.....|..||++|.+......
T Consensus 147 v~la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~ 202 (234)
T cd03251 147 IAIARALLKDPPILILDEATSALDTESERLVQAALERLMKNRTTFVIAHRLSTIEN 202 (234)
T ss_pred HHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHhh
Confidence 334555556667899998743 2333344455555443346668888887765543
No 477
>PRK00131 aroK shikimate kinase; Reviewed
Probab=93.55 E-value=0.056 Score=52.37 Aligned_cols=24 Identities=29% Similarity=0.479 Sum_probs=21.6
Q ss_pred eEEEEEEccCCChHHHHHHHHhhh
Q 002308 177 LHIISIVGMGGIGKTTLAQLACNH 200 (938)
Q Consensus 177 ~~vv~i~G~~GiGKTtLa~~v~~~ 200 (938)
...|.|+|++|+||||+|+.++..
T Consensus 4 ~~~i~l~G~~GsGKstla~~La~~ 27 (175)
T PRK00131 4 GPNIVLIGFMGAGKSTIGRLLAKR 27 (175)
T ss_pred CCeEEEEcCCCCCHHHHHHHHHHH
Confidence 458999999999999999999883
No 478
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=93.55 E-value=0.049 Score=29.34 Aligned_cols=16 Identities=44% Similarity=0.845 Sum_probs=5.8
Q ss_pred CCCeeeecCCcccccc
Q 002308 593 HLRYLNLSDQKIKKLP 608 (938)
Q Consensus 593 ~L~~L~L~~~~i~~lp 608 (938)
+|+.|+|++|.++.+|
T Consensus 2 ~L~~L~l~~n~L~~lP 17 (17)
T PF13504_consen 2 NLRTLDLSNNRLTSLP 17 (17)
T ss_dssp T-SEEEETSS--SSE-
T ss_pred ccCEEECCCCCCCCCc
Confidence 3455555555444443
No 479
>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=93.54 E-value=0.89 Score=45.22 Aligned_cols=25 Identities=28% Similarity=0.371 Sum_probs=22.2
Q ss_pred CeEEEEEEccCCChHHHHHHHHhhh
Q 002308 176 GLHIISIVGMGGIGKTTLAQLACNH 200 (938)
Q Consensus 176 ~~~vv~i~G~~GiGKTtLa~~v~~~ 200 (938)
...+++|.|+.|.|||||++.++..
T Consensus 30 ~G~~~~i~G~nG~GKSTLl~~i~G~ 54 (204)
T cd03250 30 KGELVAIVGPVGSGKSSLLSALLGE 54 (204)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCc
Confidence 4468999999999999999998874
No 480
>PF00625 Guanylate_kin: Guanylate kinase; InterPro: IPR008144 Guanylate kinase (2.7.4.8 from EC) (GK) [] catalyzes the ATP-dependent phosphorylation of GMP into GDP. It is essential for recycling GMP and indirectly, cGMP. In prokaryotes (such as Escherichia coli), lower eukaryotes (such as yeast) and in vertebrates, GK is a highly conserved monomeric protein of about 200 amino acids. GK has been shown [, , ] to be structurally similar to protein A57R (or SalG2R) from various strains of Vaccinia virus. Proteins containing one or more copies of the DHR domain, an SH3 domain as well as a C-terminal GK-like domain, are collectively termed MAGUKs (membrane-associated guanylate kinase homologs) [], and include Drosophila lethal(1)discs large-1 tumor suppressor protein (gene dlg1); mammalian tight junction protein Zo-1; a family of mammalian synaptic proteins that seem to interact with the cytoplasmic tail of NMDA receptor subunits (SAP90/PSD-95, CHAPSYN-110/PSD-93, SAP97/DLG1 and SAP102); vertebrate 55kDa erythrocyte membrane protein (p55); Caenorhabditis elegans protein lin-2; rat protein CASK; and human proteins DLG2 and DLG3. There is an ATP-binding site (P-loop) in the N-terminal section of GK, which is not conserved in the GK-like domain of the above proteins. However these proteins retain the residues known, in GK, to be involved in the binding of GMP.; GO: 0005515 protein binding; PDB: 3UAT_A 3KFV_A 2ANC_F 2F3T_E 2ANB_A 2AN9_A 1S96_A 2F3R_B 3TR0_A 1LVG_A ....
Probab=93.54 E-value=0.072 Score=51.99 Aligned_cols=36 Identities=31% Similarity=0.391 Sum_probs=28.3
Q ss_pred eEEEEEEccCCChHHHHHHHHhhhhhhhcccCeEEEEE
Q 002308 177 LHIISIVGMGGIGKTTLAQLACNHVEVKREFDKTLWVC 214 (938)
Q Consensus 177 ~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~ 214 (938)
.+++.|+|+.|+|||||+..++. .....|..++..+
T Consensus 2 ~r~ivl~Gpsg~GK~~l~~~L~~--~~~~~~~~~v~~T 37 (183)
T PF00625_consen 2 RRPIVLVGPSGSGKSTLAKRLIQ--EFPDKFGRVVSHT 37 (183)
T ss_dssp SSEEEEESSTTSSHHHHHHHHHH--HSTTTEEEEEEEE
T ss_pred CCEEEEECCCCCCHHHHHHHHHH--hcccccccceeec
Confidence 36899999999999999999988 4556675554444
No 481
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.53 E-value=0.59 Score=47.79 Aligned_cols=55 Identities=16% Similarity=0.194 Sum_probs=33.5
Q ss_pred HHHHHHhcCceEEEEEecCCC-CCccChhHHHHhhhCCCCCcEEEEEcCChhhhhh
Q 002308 247 ISIDESIAGKRFLLVLDDVWD-GDYIKWEPFYRCLKKGLHGSKILITTRKESIVSM 301 (938)
Q Consensus 247 ~~l~~~l~~~~~LlVlDdv~~-~~~~~~~~l~~~l~~~~~gs~ilvTtr~~~v~~~ 301 (938)
-.+.+.+-.++-++++|+-.. .|......+...+.....|..||++|.+......
T Consensus 146 l~la~aL~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sh~~~~~~~ 201 (236)
T cd03253 146 VAIARAILKNPPILLLDEATSALDTHTEREIQAALRDVSKGRTTIVIAHRLSTIVN 201 (236)
T ss_pred HHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEcCCHHHHHh
Confidence 345556667778999998754 2323344455555443236668888887765543
No 482
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=93.51 E-value=0.14 Score=52.24 Aligned_cols=52 Identities=21% Similarity=0.149 Sum_probs=29.3
Q ss_pred EEEEEccCCChHHHHHHHHhhhhh-----hhcccCeEEEEEeCCCCCHHHHHHHHHH
Q 002308 179 IISIVGMGGIGKTTLAQLACNHVE-----VKREFDKTLWVCVSETFDEFRIAKAMLE 230 (938)
Q Consensus 179 vv~i~G~~GiGKTtLa~~v~~~~~-----~~~~f~~~~wv~~~~~~~~~~~~~~i~~ 230 (938)
+..|+|++|.|||+++..+..... ....-...+-++...+..+..++..+.+
T Consensus 19 ~~~i~GpPGTGKT~~l~~~i~~~~~~~~~~~~~~~~~il~~~~sN~avd~~~~~l~~ 75 (236)
T PF13086_consen 19 ITLIQGPPGTGKTTTLASIIAQLLQRFKSRSADRGKKILVVSPSNAAVDNILERLKK 75 (236)
T ss_dssp -EEEE-STTSSHHHHHHHHHHHH-------HCCCSS-EEEEESSHHHHHHHHHHHHC
T ss_pred CEEEECCCCCChHHHHHHHHHHhccchhhhhhhccccceeecCCchhHHHHHHHHHh
Confidence 789999999999988777766421 1123344555555554444444444443
No 483
>PRK08840 replicative DNA helicase; Provisional
Probab=93.51 E-value=5.1 Score=45.21 Aligned_cols=55 Identities=22% Similarity=0.343 Sum_probs=38.8
Q ss_pred CeEEEEEEccCCChHHHHHHHHhhhhhhhcccCeEEEEEeCCCCCHHHHHHHHHHHhc
Q 002308 176 GLHIISIVGMGGIGKTTLAQLACNHVEVKREFDKTLWVCVSETFDEFRIAKAMLEALT 233 (938)
Q Consensus 176 ~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~ 233 (938)
....+.|-|.+|+|||++|..++.....+... .++|++ -..+..++...++....
T Consensus 216 ~g~LiviaarPg~GKTafalnia~~~a~~~~~-~v~~fS--lEMs~~ql~~Rlla~~s 270 (464)
T PRK08840 216 GSDLIIVAARPSMGKTTFAMNLCENAAMDQDK-PVLIFS--LEMPAEQLMMRMLASLS 270 (464)
T ss_pred CCceEEEEeCCCCchHHHHHHHHHHHHHhCCC-eEEEEe--ccCCHHHHHHHHHHhhC
Confidence 45688999999999999998887754323222 344444 44677888888887655
No 484
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=93.51 E-value=0.53 Score=48.38 Aligned_cols=54 Identities=17% Similarity=0.236 Sum_probs=37.8
Q ss_pred CeEEEEEEccCCChHHHHHHHHhhhhhhhcccCeEEEEEeCCCCCHHHHHHHHHHHh
Q 002308 176 GLHIISIVGMGGIGKTTLAQLACNHVEVKREFDKTLWVCVSETFDEFRIAKAMLEAL 232 (938)
Q Consensus 176 ~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l 232 (938)
...++.|.|.+|+|||+++..++...-.... ..++|++... +..++...++...
T Consensus 12 ~G~l~lI~G~~G~GKT~~~~~~~~~~~~~~g-~~vly~s~E~--~~~~~~~r~~~~~ 65 (242)
T cd00984 12 PGDLIIIAARPSMGKTAFALNIAENIAKKQG-KPVLFFSLEM--SKEQLLQRLLASE 65 (242)
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHHHHhCC-CceEEEeCCC--CHHHHHHHHHHHh
Confidence 4578999999999999999998875332212 3567776655 5666777665443
No 485
>KOG0652 consensus 26S proteasome regulatory complex, ATPase RPT5 [Posttranslational modification, protein turnover, chaperones]
Probab=93.50 E-value=1.1 Score=44.23 Aligned_cols=50 Identities=18% Similarity=0.228 Sum_probs=37.4
Q ss_pred CceecchhhHHHHHHHHhccCcc-------cCCCeEEEEEEccCCChHHHHHHHHhh
Q 002308 150 EEICGRVGERNALLSMLLCESSE-------QQKGLHIISIVGMGGIGKTTLAQLACN 199 (938)
Q Consensus 150 ~~~vGr~~~~~~l~~~l~~~~~~-------~~~~~~vv~i~G~~GiGKTtLa~~v~~ 199 (938)
+.+=|-+..++++.+++.-+-.. +-..++=|..||++|.|||-+|++.+.
T Consensus 171 sDiGGldkQIqELvEAiVLpmth~ekF~~lgi~pPKGvLmYGPPGTGKTlmARAcAa 227 (424)
T KOG0652|consen 171 SDIGGLDKQIQELVEAIVLPMTHKEKFENLGIRPPKGVLMYGPPGTGKTLMARACAA 227 (424)
T ss_pred cccccHHHHHHHHHHHhccccccHHHHHhcCCCCCCceEeeCCCCCcHHHHHHHHHH
Confidence 45677888999988877543211 123456789999999999999999887
No 486
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=93.49 E-value=0.059 Score=52.42 Aligned_cols=23 Identities=39% Similarity=0.564 Sum_probs=20.6
Q ss_pred EEEEEEccCCChHHHHHHHHhhh
Q 002308 178 HIISIVGMGGIGKTTLAQLACNH 200 (938)
Q Consensus 178 ~vv~i~G~~GiGKTtLa~~v~~~ 200 (938)
.+++|.|+.|+||||+++.++..
T Consensus 2 ~~~~i~G~sGsGKttl~~~l~~~ 24 (179)
T TIGR02322 2 RLIYVVGPSGAGKDTLLDYARAR 24 (179)
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 47899999999999999998774
No 487
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=93.47 E-value=0.05 Score=53.96 Aligned_cols=22 Identities=45% Similarity=0.590 Sum_probs=19.9
Q ss_pred EEEEEccCCChHHHHHHHHhhh
Q 002308 179 IISIVGMGGIGKTTLAQLACNH 200 (938)
Q Consensus 179 vv~i~G~~GiGKTtLa~~v~~~ 200 (938)
+|+|.|+.|+||||+++.+...
T Consensus 1 iigi~G~~GsGKSTl~~~l~~~ 22 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIEQ 22 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999998773
No 488
>PRK08149 ATP synthase SpaL; Validated
Probab=93.46 E-value=0.2 Score=55.02 Aligned_cols=88 Identities=19% Similarity=0.266 Sum_probs=51.5
Q ss_pred CeEEEEEEccCCChHHHHHHHHhhhhhhhcccCeEEEEEeC-CCCCHHHHHHHHHHHhcCC-------CCCCCcHH----
Q 002308 176 GLHIISIVGMGGIGKTTLAQLACNHVEVKREFDKTLWVCVS-ETFDEFRIAKAMLEALTGS-------TSNLNALQ---- 243 (938)
Q Consensus 176 ~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~-~~~~~~~~~~~i~~~l~~~-------~~~~~~~~---- 243 (938)
....++|.|..|+|||||+..++... .-+.+++..+. ...++.++..+........ ..+.....
T Consensus 150 ~Gq~i~I~G~sG~GKTTLl~~i~~~~----~~dv~v~g~Ig~rg~ev~e~~~~~l~~~~~~~~~vV~~~sd~p~~~r~~a 225 (428)
T PRK08149 150 VGQRMGIFASAGCGKTSLMNMLIEHS----EADVFVIGLIGERGREVTEFVESLRASSRREKCVLVYATSDFSSVDRCNA 225 (428)
T ss_pred cCCEEEEECCCCCChhHHHHHHhcCC----CCCeEEEEEEeeCCccHHHHHHHHhhcccccceEEEEECCCCCHHHHHhH
Confidence 44678999999999999999888732 12333444443 3345556666666543211 11111111
Q ss_pred -HHHHHHHHHh--cCceEEEEEecCCC
Q 002308 244 -SLLISIDESI--AGKRFLLVLDDVWD 267 (938)
Q Consensus 244 -~~~~~l~~~l--~~~~~LlVlDdv~~ 267 (938)
.....+.+++ +++++|+++||+.+
T Consensus 226 ~~~a~tiAE~fr~~G~~Vll~~DslTr 252 (428)
T PRK08149 226 ALVATTVAEYFRDQGKRVVLFIDSMTR 252 (428)
T ss_pred HHHHHHHHHHHHHcCCCEEEEccchHH
Confidence 1122233444 58999999999943
No 489
>KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones]
Probab=93.44 E-value=0.099 Score=51.42 Aligned_cols=50 Identities=18% Similarity=0.115 Sum_probs=34.8
Q ss_pred CceecchhhHHHHHHHHhccCc-------ccCCCeEEEEEEccCCChHHHHHHHHhh
Q 002308 150 EEICGRVGERNALLSMLLCESS-------EQQKGLHIISIVGMGGIGKTTLAQLACN 199 (938)
Q Consensus 150 ~~~vGr~~~~~~l~~~l~~~~~-------~~~~~~~vv~i~G~~GiGKTtLa~~v~~ 199 (938)
+.+=|=.++++++.+....+-- -+-+.++=|.++|++|.|||-+|++|++
T Consensus 177 ~dvggckeqieklrevve~pll~perfv~lgidppkgvllygppgtgktl~aravan 233 (435)
T KOG0729|consen 177 SDVGGCKEQIEKLREVVELPLLHPERFVNLGIDPPKGVLLYGPPGTGKTLCARAVAN 233 (435)
T ss_pred ccccchHHHHHHHHHHHhccccCHHHHhhcCCCCCCceEEeCCCCCchhHHHHHHhc
Confidence 3455566677777765543210 0123556789999999999999999999
No 490
>COG3598 RepA RecA-family ATPase [DNA replication, recombination, and repair]
Probab=93.41 E-value=0.34 Score=49.50 Aligned_cols=59 Identities=25% Similarity=0.297 Sum_probs=36.4
Q ss_pred EEEEEEccCCChHHHHHHHHhhhhh-hhcccC-------eEEEEEeCC-CCCHHHHHHHHHHHhcCCC
Q 002308 178 HIISIVGMGGIGKTTLAQLACNHVE-VKREFD-------KTLWVCVSE-TFDEFRIAKAMLEALTGST 236 (938)
Q Consensus 178 ~vv~i~G~~GiGKTtLa~~v~~~~~-~~~~f~-------~~~wv~~~~-~~~~~~~~~~i~~~l~~~~ 236 (938)
.++.|+|.||+|||||+...+-... -+..|. .+++|++.. ..++-.-++.+..+++.++
T Consensus 90 ~~~~~~gdsg~GKttllL~l~IalaaG~~lfG~~v~epGkvlyvslEl~re~~L~Rl~~v~a~mgLsP 157 (402)
T COG3598 90 YVSILYGDSGVGKTTLLLYLCIALAAGKNLFGNKVKEPGKVLYVSLELYREDILERLEPVRARMGLSP 157 (402)
T ss_pred eeEEEecCCcccHhHHHHHHHHHHHhhHHHhcccccCCCeEEEEEeccChHHHHHHHHHHHHHcCCCh
Confidence 4567889999999999977654321 122232 466776653 2244445566777776543
No 491
>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed
Probab=93.41 E-value=0.65 Score=47.91 Aligned_cols=25 Identities=28% Similarity=0.389 Sum_probs=22.1
Q ss_pred CeEEEEEEccCCChHHHHHHHHhhh
Q 002308 176 GLHIISIVGMGGIGKTTLAQLACNH 200 (938)
Q Consensus 176 ~~~vv~i~G~~GiGKTtLa~~v~~~ 200 (938)
...+++|.|..|.|||||++.++..
T Consensus 26 ~Ge~~~i~G~nGsGKSTLl~~l~Gl 50 (248)
T PRK09580 26 PGEVHAIMGPNGSGKSTLSATLAGR 50 (248)
T ss_pred CCCEEEEECCCCCCHHHHHHHHcCC
Confidence 3468999999999999999998874
No 492
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=93.40 E-value=0.054 Score=50.92 Aligned_cols=22 Identities=32% Similarity=0.641 Sum_probs=19.5
Q ss_pred EEEEEccCCChHHHHHHHHhhh
Q 002308 179 IISIVGMGGIGKTTLAQLACNH 200 (938)
Q Consensus 179 vv~i~G~~GiGKTtLa~~v~~~ 200 (938)
++.|.|++|+||||+|+.+...
T Consensus 1 li~l~G~~GsGKST~a~~l~~~ 22 (150)
T cd02021 1 IIVVMGVSGSGKSTVGKALAER 22 (150)
T ss_pred CEEEEcCCCCCHHHHHHHHHhh
Confidence 4789999999999999998773
No 493
>COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=93.39 E-value=0.26 Score=51.17 Aligned_cols=49 Identities=29% Similarity=0.304 Sum_probs=37.7
Q ss_pred CCCceecchhhHHH---HHHHHhccCcccCCCeEEEEEEccCCChHHHHHHHHhhh
Q 002308 148 DEEEICGRVGERNA---LLSMLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNH 200 (938)
Q Consensus 148 ~~~~~vGr~~~~~~---l~~~l~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~v~~~ 200 (938)
....+||..+.++. +.+++... .-..+.|.|+|++|.|||+||..+.+.
T Consensus 37 ~~dG~VGQ~~AReAaGvIv~mik~g----k~aGrgiLi~GppgTGKTAlA~gIa~e 88 (450)
T COG1224 37 IGDGLVGQEEAREAAGVIVKMIKQG----KMAGRGILIVGPPGTGKTALAMGIARE 88 (450)
T ss_pred cCCcccchHHHHHhhhHHHHHHHhC----cccccEEEEECCCCCcHHHHHHHHHHH
Confidence 34679998776654 56666543 235688999999999999999999884
No 494
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=93.38 E-value=0.13 Score=52.32 Aligned_cols=50 Identities=30% Similarity=0.240 Sum_probs=32.4
Q ss_pred CeEEEEEEccCCChHHHHHHHHhhhhhhhcccCeEEEEEeCCCCCHHHHHHHH
Q 002308 176 GLHIISIVGMGGIGKTTLAQLACNHVEVKREFDKTLWVCVSETFDEFRIAKAM 228 (938)
Q Consensus 176 ~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i 228 (938)
...++.|.|.+|+|||++|.+++.... +..=..++|++..++ .+++.+.+
T Consensus 18 ~gs~~li~G~~GsGKT~l~~q~l~~~~-~~~ge~vlyvs~ee~--~~~l~~~~ 67 (226)
T PF06745_consen 18 KGSVVLISGPPGSGKTTLALQFLYNGL-KNFGEKVLYVSFEEP--PEELIENM 67 (226)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHH-HHHT--EEEEESSS---HHHHHHHH
T ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHhh-hhcCCcEEEEEecCC--HHHHHHHH
Confidence 457899999999999999998776422 220245778876553 34444443
No 495
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=93.38 E-value=0.39 Score=54.81 Aligned_cols=50 Identities=18% Similarity=0.188 Sum_probs=35.1
Q ss_pred CCeEEEEEEccCCChHHHHHHHHhhhhhhhcccCeEEEEEeCCCCCHHHHHHHH
Q 002308 175 KGLHIISIVGMGGIGKTTLAQLACNHVEVKREFDKTLWVCVSETFDEFRIAKAM 228 (938)
Q Consensus 175 ~~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i 228 (938)
....++.|.|++|+|||||+.+++... ...=..++|+...+ +..++...+
T Consensus 261 ~~gs~~li~G~~G~GKt~l~~~f~~~~--~~~ge~~~y~s~eE--s~~~i~~~~ 310 (484)
T TIGR02655 261 FKDSIILATGATGTGKTLLVSKFLENA--CANKERAILFAYEE--SRAQLLRNA 310 (484)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHH--HHCCCeEEEEEeeC--CHHHHHHHH
Confidence 356899999999999999999998853 22224567766554 455555553
No 496
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=93.38 E-value=0.55 Score=54.71 Aligned_cols=25 Identities=32% Similarity=0.372 Sum_probs=22.1
Q ss_pred CeEEEEEEccCCChHHHHHHHHhhh
Q 002308 176 GLHIISIVGMGGIGKTTLAQLACNH 200 (938)
Q Consensus 176 ~~~vv~i~G~~GiGKTtLa~~v~~~ 200 (938)
....++|+|+.|.|||||++.+...
T Consensus 360 ~G~~vaIvG~SGsGKSTLl~lL~g~ 384 (529)
T TIGR02868 360 PGERVAILGPSGSGKSTLLMLLTGL 384 (529)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 4578999999999999999998764
No 497
>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a
Probab=93.37 E-value=0.25 Score=48.94 Aligned_cols=23 Identities=22% Similarity=0.173 Sum_probs=20.7
Q ss_pred eEEEEEEccCCChHHHHHHHHhh
Q 002308 177 LHIISIVGMGGIGKTTLAQLACN 199 (938)
Q Consensus 177 ~~vv~i~G~~GiGKTtLa~~v~~ 199 (938)
-++++|.|+.|.|||||.+.+..
T Consensus 28 ~~~~~ltG~Ng~GKStll~~i~~ 50 (200)
T cd03280 28 KRVLVITGPNAGGKTVTLKTLGL 50 (200)
T ss_pred ceEEEEECCCCCChHHHHHHHHH
Confidence 37899999999999999999873
No 498
>COG2019 AdkA Archaeal adenylate kinase [Nucleotide transport and metabolism]
Probab=93.35 E-value=0.076 Score=48.72 Aligned_cols=46 Identities=22% Similarity=0.320 Sum_probs=31.2
Q ss_pred eEEEEEEccCCChHHHHHHHHhhhhhhhcccCeEEEEEeCCCCCHHHHHHHHHHHhcC
Q 002308 177 LHIISIVGMGGIGKTTLAQLACNHVEVKREFDKTLWVCVSETFDEFRIAKAMLEALTG 234 (938)
Q Consensus 177 ~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~ 234 (938)
.++++|+|.+|+||||+.+.+.... +..+ -.+--.+.-+++.+.+.
T Consensus 4 ~kvvvitGVpGvGKTTVl~~~~~~l-~~~~-----------ivNyG~~Mle~A~k~gl 49 (189)
T COG2019 4 RKVVVITGVPGVGKTTVLKIALKEL-VKHK-----------IVNYGDLMLEIAKKKGL 49 (189)
T ss_pred ceEEEEEcCCCCChHHHHHHHHHHH-hhce-----------eeeHhHHHHHHHHHhCC
Confidence 5899999999999999999887632 1111 11234566667766654
No 499
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=93.35 E-value=0.16 Score=44.92 Aligned_cols=47 Identities=17% Similarity=0.324 Sum_probs=34.0
Q ss_pred ceecchhhHHHHHHHH----hccCcccCCCeEEEEEEccCCChHHHHHHHHhhh
Q 002308 151 EICGRVGERNALLSML----LCESSEQQKGLHIISIVGMGGIGKTTLAQLACNH 200 (938)
Q Consensus 151 ~~vGr~~~~~~l~~~l----~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~v~~~ 200 (938)
.++|..-..+.+.+++ .... ...+-|+..+|.+|+|||.+++.+++.
T Consensus 26 ~l~GQhla~~~v~~ai~~~l~~~~---p~KpLVlSfHG~tGtGKn~v~~liA~~ 76 (127)
T PF06309_consen 26 NLFGQHLAVEVVVNAIKGHLANPN---PRKPLVLSFHGWTGTGKNFVSRLIAEH 76 (127)
T ss_pred HccCcHHHHHHHHHHHHHHHcCCC---CCCCEEEEeecCCCCcHHHHHHHHHHH
Confidence 4667655555554444 3332 457789999999999999999988886
No 500
>cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.
Probab=93.35 E-value=0.47 Score=47.08 Aligned_cols=53 Identities=17% Similarity=0.263 Sum_probs=31.8
Q ss_pred HHHHhcCceEEEEEecCCCC-CccChh-HHHHhhhCCC-C-CcEEEEEcCChhhhhh
Q 002308 249 IDESIAGKRFLLVLDDVWDG-DYIKWE-PFYRCLKKGL-H-GSKILITTRKESIVSM 301 (938)
Q Consensus 249 l~~~l~~~~~LlVlDdv~~~-~~~~~~-~l~~~l~~~~-~-gs~ilvTtr~~~v~~~ 301 (938)
+.+.+..++-++++|+.... +..... .+...+.... . |..||++|.+.+....
T Consensus 132 la~al~~~p~illlDEP~~~LD~~~~~~~l~~~l~~~~~~~~~~iiiitH~~~~~~~ 188 (204)
T cd03240 132 LAETFGSNCGILALDEPTTNLDEENIEESLAEIIEERKSQKNFQLIVITHDEELVDA 188 (204)
T ss_pred HHHHhccCCCEEEEcCCccccCHHHHHHHHHHHHHHHHhccCCEEEEEEecHHHHhh
Confidence 44556677889999997542 222334 4555554322 2 5568888888766543
Done!