Query 002308
Match_columns 938
No_of_seqs 543 out of 4714
Neff 10.2
Searched_HMMs 29240
Date Mon Mar 25 21:05:33 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002308.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/002308hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2a5y_B CED-4; apoptosis; HET: 100.0 1.7E-44 5.8E-49 417.0 25.0 316 153-497 131-473 (549)
2 1vt4_I APAF-1 related killer D 100.0 1E-35 3.5E-40 343.9 22.3 285 151-488 129-436 (1221)
3 3sfz_A APAF-1, apoptotic pepti 100.0 9.9E-35 3.4E-39 374.5 24.3 314 145-495 119-452 (1249)
4 1z6t_A APAF-1, apoptotic prote 100.0 6E-32 2E-36 318.0 25.5 306 148-492 122-449 (591)
5 3rgz_A Protein brassinosteroid 100.0 1.8E-32 6.1E-37 331.7 9.9 385 515-935 269-765 (768)
6 3rgz_A Protein brassinosteroid 100.0 8.3E-31 2.8E-35 317.1 11.8 313 583-913 284-692 (768)
7 4eco_A Uncharacterized protein 100.0 2.5E-30 8.5E-35 305.5 10.6 376 515-914 81-600 (636)
8 3t6q_A CD180 antigen; protein- 100.0 3.6E-29 1.2E-33 296.3 19.7 383 499-913 17-461 (606)
9 3vq2_A TLR4, TOLL-like recepto 100.0 8.7E-29 3E-33 293.0 21.4 386 498-913 15-485 (606)
10 3j0a_A TOLL-like receptor 5; m 100.0 3E-28 1E-32 297.9 23.5 393 498-913 8-516 (844)
11 4ecn_A Leucine-rich repeat pro 100.0 6.5E-29 2.2E-33 297.2 16.7 348 514-914 447-840 (876)
12 4eco_A Uncharacterized protein 100.0 5.5E-29 1.9E-33 293.9 12.7 362 515-915 206-633 (636)
13 2z7x_B TOLL-like receptor 1, v 100.0 6E-28 2E-32 280.0 20.9 369 508-914 14-481 (520)
14 4ecn_A Leucine-rich repeat pro 100.0 3.7E-29 1.3E-33 299.3 10.8 359 515-913 323-818 (876)
15 2z63_A TOLL-like receptor 4, v 100.0 5.3E-28 1.8E-32 284.3 20.1 386 499-913 12-482 (570)
16 2z81_A CD282 antigen, TOLL-lik 100.0 1.3E-28 4.3E-33 288.1 14.1 371 507-914 18-510 (549)
17 3v47_A TOLL-like receptor 5B a 100.0 3.9E-28 1.3E-32 276.7 15.1 371 507-914 23-408 (455)
18 1ziw_A TOLL-like receptor 3; i 99.9 3.5E-27 1.2E-31 283.2 23.3 394 499-913 9-516 (680)
19 3t6q_A CD180 antigen; protein- 99.9 1.1E-27 3.8E-32 283.6 16.1 367 515-914 57-513 (606)
20 3vq2_A TLR4, TOLL-like recepto 99.9 5.8E-27 2E-31 277.3 20.5 370 517-913 13-460 (606)
21 3a79_B TLR6, VLRB.59, TOLL-lik 99.9 7.5E-27 2.6E-31 273.0 21.0 151 754-914 350-510 (562)
22 2z63_A TOLL-like receptor 4, v 99.9 3.8E-27 1.3E-31 277.0 14.4 383 514-913 51-530 (570)
23 1o6v_A Internalin A; bacterial 99.9 1.3E-26 4.4E-31 264.1 18.1 338 515-914 46-388 (466)
24 3o6n_A APL1; leucine-rich repe 99.9 1.7E-26 5.8E-31 257.0 18.0 310 535-916 42-354 (390)
25 3j0a_A TOLL-like receptor 5; m 99.9 4.5E-26 1.5E-30 278.6 21.7 257 514-794 47-375 (844)
26 4fmz_A Internalin; leucine ric 99.9 2.3E-26 7.8E-31 251.8 15.2 284 564-913 62-345 (347)
27 2z81_A CD282 antigen, TOLL-lik 99.9 5.4E-27 1.9E-31 274.2 10.4 370 520-913 10-485 (549)
28 3v47_A TOLL-like receptor 5B a 99.9 9.3E-26 3.2E-30 257.0 19.4 351 517-913 12-383 (455)
29 3oja_B Anopheles plasmodium-re 99.9 5.6E-26 1.9E-30 266.8 17.7 309 536-916 49-360 (597)
30 2id5_A Lingo-1, leucine rich r 99.9 9.9E-26 3.4E-30 258.2 18.5 265 520-815 16-283 (477)
31 3bz5_A Internalin-J, INLJ; leu 99.9 3.8E-25 1.3E-29 249.4 21.5 305 533-913 37-351 (457)
32 1ziw_A TOLL-like receptor 3; i 99.9 1.1E-25 3.7E-30 270.2 18.1 368 518-913 7-442 (680)
33 3o6n_A APL1; leucine-rich repe 99.9 5.7E-26 2E-30 252.7 13.1 306 514-889 44-351 (390)
34 2z7x_B TOLL-like receptor 1, v 99.9 4E-25 1.4E-29 256.3 19.5 341 514-889 44-480 (520)
35 2id5_A Lingo-1, leucine rich r 99.9 1.9E-25 6.6E-30 255.7 16.5 312 499-855 16-330 (477)
36 1o6v_A Internalin A; bacterial 99.9 5.6E-25 1.9E-29 250.6 19.1 318 535-913 43-365 (466)
37 4fmz_A Internalin; leucine ric 99.9 4.4E-25 1.5E-29 241.5 17.0 301 515-888 44-344 (347)
38 3a79_B TLR6, VLRB.59, TOLL-lik 99.9 8.6E-25 2.9E-29 255.5 19.8 353 499-889 36-509 (562)
39 3bz5_A Internalin-J, INLJ; leu 99.9 7.2E-25 2.5E-29 247.1 17.6 304 515-894 42-355 (457)
40 3oja_B Anopheles plasmodium-re 99.9 1.4E-25 4.7E-30 263.5 12.1 305 515-889 51-357 (597)
41 4g8a_A TOLL-like receptor 4; l 99.9 4.9E-24 1.7E-28 254.3 18.6 152 499-656 36-190 (635)
42 1ogq_A PGIP-2, polygalacturona 99.9 3.2E-25 1.1E-29 237.7 5.0 231 564-818 72-305 (313)
43 2ft3_A Biglycan; proteoglycan, 99.9 5.5E-23 1.9E-27 223.0 20.6 246 515-823 33-282 (332)
44 4fcg_A Uncharacterized protein 99.9 1.3E-23 4.5E-28 226.5 15.5 233 566-912 79-312 (328)
45 2ft3_A Biglycan; proteoglycan, 99.9 1.9E-23 6.4E-28 226.7 14.9 292 569-912 34-331 (332)
46 1xku_A Decorin; proteoglycan, 99.9 7.7E-23 2.6E-27 221.7 18.8 251 515-825 31-283 (330)
47 1jl5_A Outer protein YOPM; leu 99.9 2.7E-23 9.2E-28 234.1 13.8 35 515-549 11-45 (454)
48 1xku_A Decorin; proteoglycan, 99.9 3E-23 1E-27 225.0 13.4 273 568-912 52-330 (330)
49 1ogq_A PGIP-2, polygalacturona 99.9 2.4E-23 8.4E-28 223.1 9.2 201 568-815 50-255 (313)
50 4g8a_A TOLL-like receptor 4; l 99.9 8.1E-23 2.8E-27 243.7 14.1 149 520-677 36-187 (635)
51 1jl5_A Outer protein YOPM; leu 99.9 2.1E-22 7.3E-27 226.7 12.8 250 536-839 9-288 (454)
52 4fcg_A Uncharacterized protein 99.9 2.5E-22 8.4E-27 216.5 11.2 222 538-815 81-312 (328)
53 2z80_A TOLL-like receptor 2, v 99.8 1E-21 3.4E-26 215.1 8.5 268 520-815 36-312 (353)
54 1z7x_W Ribonuclease inhibitor; 99.8 2.5E-24 8.5E-29 245.7 -14.2 372 515-914 3-411 (461)
55 3g06_A SSPH2 (leucine-rich rep 99.8 2.6E-20 8.8E-25 215.9 18.5 259 569-916 41-299 (622)
56 2z80_A TOLL-like receptor 2, v 99.8 1.6E-21 5.4E-26 213.5 7.6 278 505-811 42-325 (353)
57 2z66_A Variable lymphocyte rec 99.8 6.3E-21 2.1E-25 204.3 11.3 243 519-815 11-259 (306)
58 3o53_A Protein LRIM1, AGAP0063 99.8 1.3E-21 4.6E-26 210.2 4.9 225 557-815 23-248 (317)
59 3zyj_A Leucine-rich repeat-con 99.8 2E-20 6.9E-25 211.2 14.3 242 518-815 46-290 (440)
60 3zyi_A Leucine-rich repeat-con 99.8 1.9E-20 6.5E-25 212.2 13.8 242 518-815 57-301 (452)
61 3zyi_A Leucine-rich repeat-con 99.8 7E-20 2.4E-24 207.5 14.3 224 568-856 75-301 (452)
62 3zyj_A Leucine-rich repeat-con 99.8 1.1E-19 3.6E-24 205.2 14.9 224 568-856 64-290 (440)
63 1z7x_W Ribonuclease inhibitor; 99.8 5E-23 1.7E-27 234.9 -12.7 366 515-913 28-439 (461)
64 1ozn_A Reticulon 4 receptor; N 99.8 2.8E-20 9.4E-25 197.0 9.3 108 564-671 52-161 (285)
65 1ozn_A Reticulon 4 receptor; N 99.8 7.5E-20 2.6E-24 193.6 11.8 203 567-815 31-236 (285)
66 2z66_A Variable lymphocyte rec 99.8 4.8E-20 1.7E-24 197.4 9.6 245 500-795 13-262 (306)
67 3g06_A SSPH2 (leucine-rich rep 99.8 4.9E-19 1.7E-23 205.2 18.3 255 516-856 41-295 (622)
68 3o53_A Protein LRIM1, AGAP0063 99.8 3.5E-21 1.2E-25 207.0 -1.6 269 568-895 10-280 (317)
69 3oja_A Leucine-rich immune mol 99.8 9.4E-20 3.2E-24 207.3 8.9 215 567-815 33-248 (487)
70 1wwl_A Monocyte differentiatio 99.8 1.1E-20 3.8E-25 202.5 1.1 252 535-815 40-307 (312)
71 3ogk_B Coronatine-insensitive 99.8 3.5E-21 1.2E-25 227.2 -4.8 352 516-912 139-524 (592)
72 1wwl_A Monocyte differentiatio 99.8 4.4E-20 1.5E-24 197.9 3.3 202 564-815 39-264 (312)
73 3oja_A Leucine-rich immune mol 99.8 1.8E-20 6.2E-25 213.2 -1.1 237 536-813 32-271 (487)
74 3ogk_B Coronatine-insensitive 99.8 3.1E-20 1.1E-24 219.0 0.5 355 515-913 112-500 (592)
75 2p1m_B Transport inhibitor res 99.7 3.3E-19 1.1E-23 210.4 -1.9 369 515-916 105-521 (594)
76 2z62_A TOLL-like receptor 4, v 99.7 1.5E-17 5.1E-22 175.0 10.3 132 538-675 28-161 (276)
77 1h6u_A Internalin H; cell adhe 99.7 2.5E-17 8.4E-22 175.7 12.0 195 567-822 40-234 (308)
78 2o6q_A Variable lymphocyte rec 99.7 1.3E-16 4.6E-21 166.8 17.4 196 570-815 18-216 (270)
79 1p9a_G Platelet glycoprotein I 99.7 3.1E-17 1E-21 173.1 12.0 104 568-673 31-134 (290)
80 3rfs_A Internalin B, repeat mo 99.7 7.1E-17 2.4E-21 169.1 13.5 202 567-823 40-241 (272)
81 2z62_A TOLL-like receptor 4, v 99.7 2.2E-17 7.7E-22 173.6 9.4 196 499-705 12-214 (276)
82 1p9a_G Platelet glycoprotein I 99.7 2E-16 6.9E-21 166.8 16.4 199 564-815 6-206 (290)
83 4glp_A Monocyte differentiatio 99.7 4.2E-17 1.4E-21 174.6 9.8 229 537-815 63-305 (310)
84 3rfs_A Internalin B, repeat mo 99.7 9.6E-18 3.3E-22 175.7 4.8 210 533-805 36-247 (272)
85 2ast_B S-phase kinase-associat 99.7 5.3E-18 1.8E-22 184.3 1.4 120 750-897 187-313 (336)
86 4ay9_X Follicle-stimulating ho 99.7 1.9E-16 6.6E-21 172.4 12.6 238 571-886 12-255 (350)
87 2o6q_A Variable lymphocyte rec 99.7 2.6E-16 9.1E-21 164.6 12.3 176 517-704 18-194 (270)
88 2ca6_A RAN GTPase-activating p 99.7 3.2E-18 1.1E-22 189.7 -3.0 246 530-815 24-314 (386)
89 2ca6_A RAN GTPase-activating p 99.7 1.2E-18 4.1E-23 193.1 -6.9 245 563-842 27-317 (386)
90 4glp_A Monocyte differentiatio 99.7 6.8E-17 2.3E-21 172.9 6.8 229 568-841 64-307 (310)
91 2xwt_C Thyrotropin receptor; s 99.7 1.6E-16 5.3E-21 163.1 9.3 195 569-815 32-237 (239)
92 1h6u_A Internalin H; cell adhe 99.6 2.7E-16 9.3E-21 167.7 11.1 148 535-703 38-185 (308)
93 2xwt_C Thyrotropin receptor; s 99.6 1.2E-15 3.9E-20 156.6 14.6 127 757-913 105-238 (239)
94 2qen_A Walker-type ATPase; unk 99.6 2.3E-14 7.9E-19 156.5 23.5 291 147-488 9-348 (350)
95 2ast_B S-phase kinase-associat 99.6 6.1E-17 2.1E-21 175.9 2.3 202 568-814 70-282 (336)
96 1w5s_A Origin recognition comp 99.6 1.9E-14 6.4E-19 161.1 21.1 304 148-468 20-372 (412)
97 2p1m_B Transport inhibitor res 99.6 6.5E-18 2.2E-22 199.3 -7.9 355 515-912 156-542 (594)
98 3goz_A Leucine-rich repeat-con 99.6 2E-17 6.9E-22 181.2 -4.1 241 539-815 23-295 (362)
99 3goz_A Leucine-rich repeat-con 99.6 4.5E-17 1.5E-21 178.4 -1.6 242 515-796 22-299 (362)
100 4ay9_X Follicle-stimulating ho 99.6 2E-15 6.8E-20 164.4 10.8 240 518-815 12-257 (350)
101 3m19_A Variable lymphocyte rec 99.6 4.5E-15 1.5E-19 153.3 11.6 176 516-704 15-192 (251)
102 3m19_A Variable lymphocyte rec 99.6 9.6E-15 3.3E-19 150.8 12.6 172 499-677 19-193 (251)
103 2fna_A Conserved hypothetical 99.6 2.4E-13 8.1E-18 148.9 24.2 292 148-488 11-356 (357)
104 1h6t_A Internalin B; cell adhe 99.5 1.9E-14 6.6E-19 151.8 11.0 169 567-794 45-213 (291)
105 3cvr_A Invasion plasmid antige 99.5 9.2E-15 3.2E-19 167.1 8.9 183 568-797 59-246 (571)
106 1m9s_A Internalin B; cell inva 99.5 9.7E-15 3.3E-19 169.1 9.0 170 566-794 41-210 (605)
107 1h6t_A Internalin B; cell adhe 99.5 1.2E-14 4.3E-19 153.3 8.3 191 570-821 26-216 (291)
108 2v9t_B SLIT homolog 2 protein 99.5 3.8E-14 1.3E-18 142.6 9.6 153 517-677 13-166 (220)
109 2o6s_A Variable lymphocyte rec 99.5 4.7E-14 1.6E-18 141.0 10.2 170 519-708 11-182 (208)
110 1xeu_A Internalin C; cellular 99.5 2.2E-14 7.4E-19 148.8 6.9 166 567-815 18-183 (263)
111 3qfl_A MLA10; coiled-coil, (CC 99.5 7.2E-14 2.5E-18 121.9 9.0 70 2-71 12-83 (115)
112 4b8c_D Glucose-repressible alc 99.5 1.1E-14 3.6E-19 173.4 4.9 158 515-677 173-330 (727)
113 4ezg_A Putative uncharacterize 99.5 9.7E-14 3.3E-18 137.3 10.8 150 515-676 44-194 (197)
114 3cvr_A Invasion plasmid antige 99.5 2.8E-14 9.5E-19 163.2 7.7 183 592-823 59-249 (571)
115 1m9s_A Internalin B; cell inva 99.5 3.7E-14 1.3E-18 164.2 8.7 172 533-734 38-209 (605)
116 4ezg_A Putative uncharacterize 99.5 3.9E-14 1.3E-18 140.2 7.6 131 535-676 41-172 (197)
117 2v70_A SLIT-2, SLIT homolog 2 99.5 9.6E-14 3.3E-18 139.7 10.0 156 515-677 11-167 (220)
118 2o6s_A Variable lymphocyte rec 99.5 1.5E-13 5.2E-18 137.3 10.9 165 504-682 17-184 (208)
119 3e6j_A Variable lymphocyte rec 99.5 1.4E-13 4.8E-18 139.6 9.9 152 517-677 21-173 (229)
120 1dce_A Protein (RAB geranylger 99.4 2.6E-16 8.8E-21 181.3 -14.3 188 589-821 346-549 (567)
121 2qby_B CDC6 homolog 3, cell di 99.4 2.9E-11 9.9E-16 133.6 26.5 296 149-469 19-341 (384)
122 1dce_A Protein (RAB geranylger 99.4 4E-15 1.4E-19 171.3 -4.9 59 753-811 504-567 (567)
123 2v1u_A Cell division control p 99.4 4.7E-11 1.6E-15 132.1 28.2 297 148-468 17-352 (387)
124 1fnn_A CDC6P, cell division co 99.4 4E-11 1.4E-15 132.8 27.4 299 149-469 16-353 (389)
125 3e6j_A Variable lymphocyte rec 99.4 6.8E-13 2.3E-17 134.5 11.7 147 499-652 24-172 (229)
126 2v70_A SLIT-2, SLIT homolog 2 99.4 9.7E-13 3.3E-17 132.3 10.9 141 506-652 23-166 (220)
127 1xeu_A Internalin C; cellular 99.4 2E-12 6.9E-17 133.9 13.0 146 515-677 41-186 (263)
128 2v9t_B SLIT homolog 2 protein 99.4 1.3E-12 4.4E-17 131.5 10.6 109 568-677 32-142 (220)
129 2xot_A Amphoterin-induced prot 99.4 3.6E-13 1.2E-17 147.0 7.1 174 517-703 20-201 (361)
130 2xot_A Amphoterin-induced prot 99.4 4.8E-13 1.6E-17 146.1 6.9 160 509-675 33-201 (361)
131 2ell_A Acidic leucine-rich nuc 99.3 1.1E-12 3.6E-17 126.1 7.5 126 515-649 24-157 (168)
132 2ell_A Acidic leucine-rich nuc 99.3 2.6E-12 9E-17 123.3 8.6 135 566-703 22-159 (168)
133 1njg_A DNA polymerase III subu 99.3 5.2E-11 1.8E-15 122.6 18.1 189 149-363 22-231 (250)
134 4b8c_D Glucose-repressible alc 99.3 4.9E-13 1.7E-17 159.1 1.8 144 525-677 211-355 (727)
135 2je0_A Acidic leucine-rich nuc 99.3 2.9E-12 9.9E-17 120.2 6.4 103 564-670 38-147 (149)
136 2qby_A CDC6 homolog 1, cell di 99.3 8.2E-11 2.8E-15 130.1 19.3 295 148-467 18-348 (386)
137 1a9n_A U2A', U2A'; complex (nu 99.3 6.5E-12 2.2E-16 121.5 7.6 132 533-675 14-152 (176)
138 2je0_A Acidic leucine-rich nuc 99.2 2.8E-12 9.5E-17 120.4 4.7 133 565-699 14-148 (149)
139 1w8a_A SLIT protein; signaling 99.2 1E-11 3.4E-16 122.0 8.8 124 518-649 11-136 (192)
140 2chg_A Replication factor C sm 99.2 2.6E-10 8.9E-15 115.3 19.5 186 149-360 16-204 (226)
141 1w8a_A SLIT protein; signaling 99.2 2.1E-11 7.1E-16 119.7 9.5 128 541-677 11-140 (192)
142 2wfh_A SLIT homolog 2 protein 99.2 3.1E-11 1.1E-15 118.4 10.0 108 568-676 31-139 (193)
143 1a9n_A U2A', U2A'; complex (nu 99.2 1.9E-11 6.4E-16 118.2 7.0 133 564-702 15-151 (176)
144 3sb4_A Hypothetical leucine ri 99.2 3.6E-11 1.2E-15 129.4 9.1 290 537-907 24-327 (329)
145 2wfh_A SLIT homolog 2 protein 99.2 8.7E-11 3E-15 115.1 10.3 125 517-651 12-138 (193)
146 2o6r_A Variable lymphocyte rec 99.1 8E-11 2.7E-15 114.0 9.2 123 518-649 10-134 (177)
147 1sxj_B Activator 1 37 kDa subu 99.1 1.8E-09 6.2E-14 115.9 16.3 186 149-360 20-210 (323)
148 1ds9_A Outer arm dynein; leuci 99.1 9.4E-13 3.2E-17 130.3 -9.1 82 564-649 44-125 (198)
149 2o6r_A Variable lymphocyte rec 99.0 8.7E-10 3E-14 106.6 11.8 127 540-677 9-138 (177)
150 1ds9_A Outer arm dynein; leuci 99.0 3.5E-12 1.2E-16 126.1 -7.3 143 516-669 24-180 (198)
151 3g39_A Variable lymphocyte rec 98.9 1.6E-09 5.6E-14 103.6 9.3 102 571-676 12-115 (170)
152 3te6_A Regulatory protein SIR3 98.9 2.8E-08 9.6E-13 103.4 18.1 172 151-327 21-212 (318)
153 2r9u_A Variable lymphocyte rec 98.9 2.6E-09 8.8E-14 102.5 9.5 81 568-649 33-115 (174)
154 2r9u_A Variable lymphocyte rec 98.9 1.1E-09 3.7E-14 105.2 6.6 113 516-637 13-126 (174)
155 1iqp_A RFCS; clamp loader, ext 98.9 1.5E-08 5.2E-13 108.9 15.8 187 149-361 24-213 (327)
156 3g39_A Variable lymphocyte rec 98.9 2.5E-09 8.7E-14 102.2 7.0 83 568-651 30-114 (170)
157 1hqc_A RUVB; extended AAA-ATPa 98.8 2E-08 6.9E-13 107.7 14.4 183 149-363 11-214 (324)
158 4fdw_A Leucine rich hypothetic 98.8 1.4E-08 4.7E-13 111.5 13.3 61 752-815 295-356 (401)
159 3sb4_A Hypothetical leucine ri 98.8 1.7E-09 5.7E-14 116.3 5.7 92 720-825 224-317 (329)
160 1jr3_A DNA polymerase III subu 98.8 1.2E-07 4.2E-12 103.8 17.2 195 150-360 16-221 (373)
161 4fdw_A Leucine rich hypothetic 98.7 4.2E-07 1.4E-11 99.6 20.7 140 757-930 248-395 (401)
162 4fs7_A Uncharacterized protein 98.7 6.6E-08 2.3E-12 106.6 14.1 311 531-911 64-376 (394)
163 2chq_A Replication factor C sm 98.7 1.1E-07 3.6E-12 101.8 14.9 183 149-360 16-204 (319)
164 2ifg_A High affinity nerve gro 98.6 5.7E-08 2E-12 105.3 9.1 100 574-676 14-116 (347)
165 3un9_A NLR family member X1; l 98.6 5.8E-09 2E-13 113.3 0.1 157 515-676 72-252 (372)
166 3un9_A NLR family member X1; l 98.6 3.1E-09 1.1E-13 115.4 -2.6 138 537-676 71-224 (372)
167 1sxj_D Activator 1 41 kDa subu 98.6 1.1E-06 3.7E-11 95.4 17.5 195 149-359 36-234 (353)
168 1jbk_A CLPB protein; beta barr 98.5 4E-07 1.4E-11 89.1 12.0 152 149-322 21-194 (195)
169 3bos_A Putative DNA replicatio 98.5 2.3E-07 7.8E-12 94.6 10.5 175 150-361 28-218 (242)
170 2ifg_A High affinity nerve gro 98.5 9.4E-08 3.2E-12 103.6 7.4 85 564-649 27-113 (347)
171 4fs7_A Uncharacterized protein 98.5 2.3E-06 7.8E-11 94.2 16.9 288 560-911 63-353 (394)
172 2z4s_A Chromosomal replication 98.4 4.8E-06 1.6E-10 92.3 16.5 162 177-359 130-305 (440)
173 2qz4_A Paraplegin; AAA+, SPG7, 98.4 9.7E-06 3.3E-10 83.6 17.9 189 149-360 5-222 (262)
174 3h4m_A Proteasome-activating n 98.4 2.7E-06 9.3E-11 89.0 13.7 187 148-360 15-231 (285)
175 1sxj_E Activator 1 40 kDa subu 98.4 1.9E-06 6.4E-11 93.5 12.7 196 150-360 14-237 (354)
176 3pfi_A Holliday junction ATP-d 98.4 4.2E-06 1.4E-10 90.0 15.3 179 149-360 28-227 (338)
177 3pvs_A Replication-associated 98.4 4.4E-06 1.5E-10 92.3 15.6 181 149-360 25-215 (447)
178 1sxj_A Activator 1 95 kDa subu 98.4 2.3E-06 7.9E-11 97.2 13.7 198 149-360 38-253 (516)
179 3uk6_A RUVB-like 2; hexameric 98.3 9E-06 3.1E-10 88.6 17.6 200 149-360 43-303 (368)
180 2ra8_A Uncharacterized protein 98.3 4.4E-07 1.5E-11 97.5 5.4 39 755-793 277-319 (362)
181 1a5t_A Delta prime, HOLB; zinc 98.3 1.7E-05 5.7E-10 84.7 17.1 171 156-360 8-205 (334)
182 3u61_B DNA polymerase accessor 98.3 6.9E-06 2.4E-10 87.7 13.8 180 149-358 25-214 (324)
183 2ra8_A Uncharacterized protein 98.3 1E-07 3.5E-12 102.4 -0.5 116 533-651 134-264 (362)
184 3syl_A Protein CBBX; photosynt 98.2 2.6E-05 9E-10 82.5 16.8 162 151-328 32-219 (309)
185 1l8q_A Chromosomal replication 98.2 2.2E-05 7.4E-10 83.7 15.7 155 177-355 37-203 (324)
186 1sxj_C Activator 1 40 kDa subu 98.2 3.2E-05 1.1E-09 83.0 16.9 182 150-357 25-209 (340)
187 3n70_A Transport activator; si 98.1 4.6E-06 1.6E-10 76.9 8.1 114 151-295 2-115 (145)
188 3eie_A Vacuolar protein sortin 98.1 4.8E-05 1.6E-09 80.8 17.1 188 149-361 17-229 (322)
189 2p65_A Hypothetical protein PF 98.1 6.3E-06 2.2E-10 79.9 9.3 46 149-200 21-66 (187)
190 4gt6_A Cell surface protein; l 98.1 1E-05 3.6E-10 88.9 11.5 108 533-649 58-170 (394)
191 1xwi_A SKD1 protein; VPS4B, AA 98.1 0.00013 4.6E-09 77.1 19.4 191 149-362 11-225 (322)
192 1io0_A Tropomodulin; LRR prote 98.1 1.8E-06 6E-11 83.5 4.4 116 533-650 31-162 (185)
193 2qp9_X Vacuolar protein sortin 98.1 4.4E-05 1.5E-09 82.0 15.8 189 149-361 50-262 (355)
194 3d8b_A Fidgetin-like protein 1 98.1 5.8E-05 2E-09 81.3 16.7 187 150-361 84-296 (357)
195 1d2n_A N-ethylmaleimide-sensit 98.1 4.4E-05 1.5E-09 79.0 14.9 171 150-351 33-228 (272)
196 3b9p_A CG5977-PA, isoform A; A 98.0 0.00013 4.5E-09 76.5 18.2 188 149-361 20-234 (297)
197 3rw6_A Nuclear RNA export fact 98.0 3.1E-06 1.1E-10 85.8 4.4 81 564-645 166-257 (267)
198 1io0_A Tropomodulin; LRR prote 98.0 1.6E-06 5.6E-11 83.8 1.9 118 558-675 26-163 (185)
199 3ec2_A DNA replication protein 98.0 1.6E-05 5.4E-10 76.5 8.9 122 155-296 19-143 (180)
200 4gt6_A Cell surface protein; l 98.0 3.3E-05 1.1E-09 84.9 12.1 320 517-912 66-389 (394)
201 2gno_A DNA polymerase III, gam 97.9 6.7E-05 2.3E-09 78.2 13.1 149 154-326 1-152 (305)
202 2w58_A DNAI, primosome compone 97.9 2.4E-05 8.2E-10 76.9 9.2 126 150-295 25-158 (202)
203 2zan_A Vacuolar protein sortin 97.9 0.00033 1.1E-08 77.7 18.7 190 149-361 133-346 (444)
204 3vfd_A Spastin; ATPase, microt 97.9 0.00022 7.6E-09 77.9 17.2 190 148-361 113-327 (389)
205 3cf0_A Transitional endoplasmi 97.9 0.0002 6.9E-09 75.1 16.1 181 149-354 14-222 (301)
206 4fcw_A Chaperone protein CLPB; 97.9 9.6E-05 3.3E-09 78.2 13.4 136 151-295 18-169 (311)
207 3pxg_A Negative regulator of g 97.8 4.3E-05 1.5E-09 85.4 9.8 145 150-326 180-338 (468)
208 1qvr_A CLPB protein; coiled co 97.8 9.8E-05 3.4E-09 89.4 12.6 154 150-325 170-344 (854)
209 3co5_A Putative two-component 97.7 1.6E-05 5.3E-10 73.1 4.1 111 150-295 4-115 (143)
210 1lv7_A FTSH; alpha/beta domain 97.7 0.00068 2.3E-08 69.2 16.8 187 148-359 10-224 (257)
211 3hu3_A Transitional endoplasmi 97.7 0.00041 1.4E-08 77.4 15.9 186 150-360 204-415 (489)
212 3e4g_A ATP synthase subunit S, 97.7 6.5E-06 2.2E-10 77.1 1.0 39 877-916 114-154 (176)
213 2bjv_A PSP operon transcriptio 97.7 8.3E-05 2.8E-09 76.6 8.8 132 150-295 6-150 (265)
214 1ojl_A Transcriptional regulat 97.7 9.1E-05 3.1E-09 77.6 8.9 160 150-324 2-188 (304)
215 4b4t_J 26S protease regulatory 97.7 0.00074 2.5E-08 72.0 15.7 178 149-352 147-353 (405)
216 3rw6_A Nuclear RNA export fact 97.6 7.6E-06 2.6E-10 83.0 0.2 80 589-670 167-258 (267)
217 1in4_A RUVB, holliday junction 97.6 0.00067 2.3E-08 72.2 15.3 178 150-360 25-223 (334)
218 2c9o_A RUVB-like 1; hexameric 97.6 0.00035 1.2E-08 77.9 13.6 97 259-360 298-410 (456)
219 4h09_A Hypothetical leucine ri 97.6 0.00033 1.1E-08 76.4 13.0 68 752-823 235-304 (379)
220 4b4t_L 26S protease subunit RP 97.6 0.0013 4.5E-08 71.3 16.9 178 149-352 180-386 (437)
221 4b4t_K 26S protease regulatory 97.6 0.00066 2.2E-08 73.6 14.2 178 149-352 171-378 (428)
222 2kjq_A DNAA-related protein; s 97.6 6.8E-05 2.3E-09 69.0 5.5 87 177-295 36-124 (149)
223 3e4g_A ATP synthase subunit S, 97.5 3.5E-05 1.2E-09 72.1 3.4 85 538-628 61-152 (176)
224 1ofh_A ATP-dependent HSL prote 97.5 0.0016 5.4E-08 68.7 16.7 155 150-324 15-213 (310)
225 4b4t_H 26S protease regulatory 97.5 0.0023 8E-08 69.1 16.9 177 150-352 209-414 (467)
226 4b4t_M 26S protease regulatory 97.5 0.00065 2.2E-08 73.7 12.5 178 149-352 180-386 (434)
227 1r6b_X CLPA protein; AAA+, N-t 97.5 0.00067 2.3E-08 81.3 14.0 157 150-326 186-362 (758)
228 3pxi_A Negative regulator of g 97.4 0.00078 2.7E-08 80.5 13.8 156 150-326 491-675 (758)
229 2ce7_A Cell division protein F 97.4 0.0034 1.2E-07 69.3 17.3 180 149-353 15-221 (476)
230 4b4t_I 26S protease regulatory 97.4 0.0018 6E-08 69.3 14.2 177 150-352 182-387 (437)
231 3pxi_A Negative regulator of g 97.4 0.00051 1.7E-08 82.1 11.1 147 150-326 180-338 (758)
232 2r62_A Cell division protease 97.3 0.00015 5.1E-09 74.8 4.7 159 149-327 10-197 (268)
233 4h09_A Hypothetical leucine ri 97.3 0.0019 6.3E-08 70.4 13.3 94 717-825 235-329 (379)
234 2qgz_A Helicase loader, putati 97.2 0.0004 1.4E-08 72.7 6.4 55 157-215 135-189 (308)
235 1qvr_A CLPB protein; coiled co 97.1 0.0016 5.4E-08 78.8 12.0 135 151-295 559-710 (854)
236 1r6b_X CLPA protein; AAA+, N-t 97.1 0.0013 4.6E-08 78.6 11.1 135 150-295 458-607 (758)
237 2r44_A Uncharacterized protein 97.1 0.0014 4.9E-08 69.7 10.2 152 150-327 27-199 (331)
238 3cf2_A TER ATPase, transitiona 97.1 0.0026 8.7E-08 74.6 12.7 180 149-353 203-407 (806)
239 3t15_A Ribulose bisphosphate c 97.1 0.0045 1.5E-07 64.3 13.0 26 175-200 34-59 (293)
240 3m6a_A ATP-dependent protease 97.0 0.0014 5E-08 74.4 9.9 165 150-326 81-266 (543)
241 2x8a_A Nuclear valosin-contain 97.0 0.012 4.1E-07 60.3 15.8 155 150-326 10-191 (274)
242 2vhj_A Ntpase P4, P4; non- hyd 96.8 0.00084 2.9E-08 68.9 4.8 69 177-267 123-193 (331)
243 1ixz_A ATP-dependent metallopr 96.8 0.011 3.9E-07 59.9 12.9 156 149-326 15-199 (254)
244 1um8_A ATP-dependent CLP prote 96.7 0.019 6.4E-07 62.2 15.2 50 151-200 22-95 (376)
245 1jr3_D DNA polymerase III, del 96.6 0.031 1.1E-06 59.6 15.9 157 176-358 17-183 (343)
246 1iy2_A ATP-dependent metallopr 96.6 0.021 7.3E-07 58.7 13.8 179 148-353 38-245 (278)
247 2dhr_A FTSH; AAA+ protein, hex 96.6 0.055 1.9E-06 60.0 17.8 177 148-353 29-236 (499)
248 2cvh_A DNA repair and recombin 96.6 0.01 3.5E-07 58.6 11.0 86 176-267 19-116 (220)
249 1ypw_A Transitional endoplasmi 96.6 0.0076 2.6E-07 71.9 11.3 158 149-327 203-386 (806)
250 2b8t_A Thymidine kinase; deoxy 96.5 0.0024 8.2E-08 62.6 5.8 113 176-296 11-126 (223)
251 1g5t_A COB(I)alamin adenosyltr 96.5 0.0036 1.2E-07 59.4 6.2 117 178-296 29-163 (196)
252 1pgv_A TMD-1, tropomodulin TMD 96.4 0.0029 9.9E-08 60.3 5.3 112 536-649 39-167 (197)
253 1n0w_A DNA repair protein RAD5 96.3 0.01 3.5E-07 59.8 9.0 91 176-267 23-130 (243)
254 3io5_A Recombination and repai 96.2 0.019 6.5E-07 58.7 10.1 85 178-267 29-122 (333)
255 3hr8_A Protein RECA; alpha and 96.2 0.014 4.7E-07 61.7 9.4 85 176-267 60-150 (356)
256 2w0m_A SSO2452; RECA, SSPF, un 96.0 0.02 7E-07 57.0 9.7 115 177-296 23-168 (235)
257 1v5w_A DMC1, meiotic recombina 96.0 0.032 1.1E-06 59.2 11.2 58 175-233 120-181 (343)
258 1xp8_A RECA protein, recombina 95.9 0.027 9.1E-07 60.0 10.1 85 176-267 73-163 (366)
259 1ye8_A Protein THEP1, hypothet 95.9 0.044 1.5E-06 51.8 10.6 23 179-201 2-24 (178)
260 2i1q_A DNA repair and recombin 95.8 0.019 6.4E-07 60.6 8.4 57 176-233 97-167 (322)
261 2zr9_A Protein RECA, recombina 95.7 0.033 1.1E-06 59.0 10.0 85 176-267 60-150 (349)
262 2z43_A DNA repair and recombin 95.7 0.031 1E-06 58.9 9.7 57 176-233 106-166 (324)
263 1u94_A RECA protein, recombina 95.4 0.037 1.3E-06 58.7 8.8 84 176-266 62-151 (356)
264 1rz3_A Hypothetical protein rb 95.3 0.017 5.8E-07 56.1 5.4 43 155-200 3-45 (201)
265 2px0_A Flagellar biosynthesis 95.3 0.04 1.4E-06 56.9 8.5 86 176-264 104-190 (296)
266 1pgv_A TMD-1, tropomodulin TMD 95.2 0.017 5.8E-07 55.0 4.8 92 557-649 30-136 (197)
267 2cbz_A Multidrug resistance-as 95.1 0.1 3.5E-06 51.8 10.6 25 176-200 30-54 (237)
268 1cr0_A DNA primase/helicase; R 95.1 0.077 2.6E-06 55.1 10.1 39 176-216 34-73 (296)
269 3tqc_A Pantothenate kinase; bi 95.0 0.066 2.3E-06 55.6 9.0 46 152-199 69-114 (321)
270 3bh0_A DNAB-like replicative h 95.0 0.18 6.1E-06 52.7 12.5 53 176-232 67-119 (315)
271 3ice_A Transcription terminati 94.8 0.047 1.6E-06 57.3 7.4 52 161-218 163-215 (422)
272 3nbx_X ATPase RAVA; AAA+ ATPas 94.8 0.02 6.7E-07 63.7 4.8 43 150-200 22-64 (500)
273 2pze_A Cystic fibrosis transme 94.8 0.22 7.4E-06 49.2 11.9 24 177-200 34-57 (229)
274 1sky_E F1-ATPase, F1-ATP synth 94.7 0.066 2.3E-06 58.2 8.5 88 178-266 152-255 (473)
275 3cf2_A TER ATPase, transitiona 94.7 0.041 1.4E-06 64.5 7.3 159 148-326 475-661 (806)
276 1odf_A YGR205W, hypothetical 3 94.5 0.24 8.4E-06 50.7 11.8 81 175-255 29-117 (290)
277 2orw_A Thymidine kinase; TMTK, 94.4 0.0077 2.6E-07 57.4 0.4 108 178-296 4-113 (184)
278 3lda_A DNA repair protein RAD5 94.4 0.11 3.8E-06 55.8 9.4 57 176-233 177-237 (400)
279 3rfe_A Platelet glycoprotein I 94.4 0.055 1.9E-06 47.9 5.8 53 572-626 12-66 (130)
280 1pzn_A RAD51, DNA repair and r 94.3 0.13 4.4E-06 54.5 9.6 48 176-223 130-181 (349)
281 1vma_A Cell division protein F 94.2 0.17 5.9E-06 52.2 10.0 88 176-266 103-196 (306)
282 1qhx_A CPT, protein (chloramph 94.2 0.023 7.9E-07 53.8 3.3 22 178-199 4-25 (178)
283 3hws_A ATP-dependent CLP prote 94.2 0.032 1.1E-06 60.0 4.6 50 151-200 16-74 (363)
284 3upu_A ATP-dependent DNA helic 94.2 0.034 1.2E-06 61.8 5.0 23 179-201 47-69 (459)
285 4a1f_A DNAB helicase, replicat 94.2 0.14 4.7E-06 53.6 9.1 54 176-233 45-98 (338)
286 1zp6_A Hypothetical protein AT 94.1 0.027 9.2E-07 54.1 3.5 24 176-199 8-31 (191)
287 1ly1_A Polynucleotide kinase; 94.1 0.028 9.5E-07 53.4 3.5 22 178-199 3-24 (181)
288 3lw7_A Adenylate kinase relate 94.1 0.025 8.5E-07 53.5 3.1 19 179-197 3-21 (179)
289 3c8u_A Fructokinase; YP_612366 94.0 0.037 1.3E-06 54.0 4.3 39 158-200 7-45 (208)
290 3dm5_A SRP54, signal recogniti 94.0 0.27 9.1E-06 53.3 11.2 25 176-200 99-123 (443)
291 3kb2_A SPBC2 prophage-derived 94.0 0.028 9.5E-07 52.9 3.2 21 179-199 3-23 (173)
292 3vaa_A Shikimate kinase, SK; s 93.9 0.027 9.2E-07 54.6 3.1 23 177-199 25-47 (199)
293 3uie_A Adenylyl-sulfate kinase 93.9 0.036 1.2E-06 53.7 3.9 25 176-200 24-48 (200)
294 2ga8_A Hypothetical 39.9 kDa p 93.9 0.051 1.8E-06 56.7 5.2 46 153-200 2-47 (359)
295 1gvn_B Zeta; postsegregational 93.8 0.055 1.9E-06 55.7 5.3 25 175-199 31-55 (287)
296 2pjz_A Hypothetical protein ST 93.7 0.31 1.1E-05 49.1 10.6 24 177-200 30-53 (263)
297 1kgd_A CASK, peripheral plasma 93.7 0.032 1.1E-06 53.0 3.1 24 177-200 5-28 (180)
298 1g8p_A Magnesium-chelatase 38 93.7 0.024 8.2E-07 60.7 2.4 46 149-200 23-68 (350)
299 2r2a_A Uncharacterized protein 93.7 0.091 3.1E-06 50.4 6.2 21 179-199 7-27 (199)
300 3trf_A Shikimate kinase, SK; a 93.6 0.033 1.1E-06 53.1 2.9 23 177-199 5-27 (185)
301 2yvu_A Probable adenylyl-sulfa 93.5 0.084 2.9E-06 50.3 5.8 26 175-200 11-36 (186)
302 1ex7_A Guanylate kinase; subst 93.5 0.024 8E-07 53.8 1.7 22 178-199 2-23 (186)
303 2rhm_A Putative kinase; P-loop 93.5 0.042 1.5E-06 52.8 3.7 24 176-199 4-27 (193)
304 1kag_A SKI, shikimate kinase I 93.5 0.031 1.1E-06 52.6 2.7 22 178-199 5-26 (173)
305 1knq_A Gluconate kinase; ALFA/ 93.4 0.048 1.6E-06 51.4 3.8 24 176-199 7-30 (175)
306 3fwy_A Light-independent proto 93.4 0.042 1.4E-06 57.2 3.6 40 175-216 46-85 (314)
307 3tau_A Guanylate kinase, GMP k 93.3 0.041 1.4E-06 53.7 3.2 25 176-200 7-31 (208)
308 4gp7_A Metallophosphoesterase; 93.3 0.042 1.4E-06 51.6 3.1 24 176-199 8-31 (171)
309 1nks_A Adenylate kinase; therm 93.2 0.045 1.5E-06 52.6 3.3 23 178-200 2-24 (194)
310 2ck3_D ATP synthase subunit be 93.2 0.42 1.5E-05 51.8 11.1 65 161-231 142-207 (482)
311 4eun_A Thermoresistant glucoki 93.2 0.042 1.4E-06 53.2 3.1 25 176-200 28-52 (200)
312 2p5t_B PEZT; postsegregational 93.1 0.067 2.3E-06 54.0 4.6 40 159-199 15-54 (253)
313 3e70_C DPA, signal recognition 93.1 0.52 1.8E-05 49.2 11.4 26 175-200 127-152 (328)
314 1uj2_A Uridine-cytidine kinase 93.1 0.052 1.8E-06 54.8 3.7 25 175-199 20-44 (252)
315 1kht_A Adenylate kinase; phosp 93.0 0.049 1.7E-06 52.2 3.2 23 178-200 4-26 (192)
316 1y63_A LMAJ004144AAA protein; 93.0 0.048 1.7E-06 51.9 3.1 23 177-199 10-32 (184)
317 2qor_A Guanylate kinase; phosp 93.0 0.04 1.4E-06 53.5 2.6 25 176-200 11-35 (204)
318 1q57_A DNA primase/helicase; d 93.0 0.28 9.7E-06 55.1 9.9 55 176-233 241-295 (503)
319 2ze6_A Isopentenyl transferase 93.0 0.052 1.8E-06 54.7 3.5 23 178-200 2-24 (253)
320 2ffh_A Protein (FFH); SRP54, s 93.0 0.4 1.4E-05 51.8 10.6 24 177-200 98-121 (425)
321 2bdt_A BH3686; alpha-beta prot 93.0 0.055 1.9E-06 51.8 3.5 22 178-199 3-24 (189)
322 3t61_A Gluconokinase; PSI-biol 93.0 0.041 1.4E-06 53.3 2.7 24 177-200 18-41 (202)
323 3l0o_A Transcription terminati 93.0 0.41 1.4E-05 50.2 10.1 53 159-217 162-215 (427)
324 3tr0_A Guanylate kinase, GMP k 93.0 0.048 1.6E-06 53.0 3.1 23 177-199 7-29 (205)
325 3iij_A Coilin-interacting nucl 93.0 0.042 1.4E-06 52.1 2.6 24 177-200 11-34 (180)
326 3kl4_A SRP54, signal recogniti 93.0 0.39 1.3E-05 52.0 10.4 26 176-201 96-121 (433)
327 1fx0_B ATP synthase beta chain 92.9 0.25 8.6E-06 53.7 8.8 64 162-231 155-219 (498)
328 2r6a_A DNAB helicase, replicat 92.9 0.24 8.1E-06 54.8 9.0 52 176-230 202-253 (454)
329 1tev_A UMP-CMP kinase; ploop, 92.9 0.056 1.9E-06 52.0 3.5 23 177-199 3-25 (196)
330 1ukz_A Uridylate kinase; trans 92.9 0.063 2.2E-06 52.1 3.9 24 176-199 14-37 (203)
331 1tue_A Replication protein E1; 92.9 0.064 2.2E-06 51.0 3.7 37 159-200 45-81 (212)
332 2qt1_A Nicotinamide riboside k 92.9 0.06 2E-06 52.4 3.7 24 176-199 20-43 (207)
333 3asz_A Uridine kinase; cytidin 92.9 0.057 2E-06 52.7 3.5 25 176-200 5-29 (211)
334 1zuh_A Shikimate kinase; alpha 92.8 0.056 1.9E-06 50.6 3.2 24 176-199 6-29 (168)
335 3cm0_A Adenylate kinase; ATP-b 92.8 0.066 2.3E-06 51.0 3.8 23 177-199 4-26 (186)
336 1uf9_A TT1252 protein; P-loop, 92.8 0.062 2.1E-06 52.1 3.6 25 175-199 6-30 (203)
337 4akg_A Glutathione S-transfera 92.8 0.96 3.3E-05 60.4 15.5 235 180-463 1270-1537(2695)
338 2j41_A Guanylate kinase; GMP, 92.8 0.054 1.9E-06 52.7 3.2 24 177-200 6-29 (207)
339 3a00_A Guanylate kinase, GMP k 92.7 0.042 1.4E-06 52.5 2.3 23 178-200 2-24 (186)
340 2xxa_A Signal recognition part 92.7 0.53 1.8E-05 51.3 11.2 26 176-201 99-124 (433)
341 1via_A Shikimate kinase; struc 92.7 0.049 1.7E-06 51.4 2.7 22 179-200 6-27 (175)
342 3umf_A Adenylate kinase; rossm 92.7 0.068 2.3E-06 52.0 3.7 26 175-200 27-52 (217)
343 3ney_A 55 kDa erythrocyte memb 92.7 0.057 1.9E-06 51.6 3.0 24 176-199 18-41 (197)
344 2jaq_A Deoxyguanosine kinase; 92.6 0.06 2E-06 52.2 3.2 22 179-200 2-23 (205)
345 2c95_A Adenylate kinase 1; tra 92.6 0.056 1.9E-06 52.0 3.0 23 177-199 9-31 (196)
346 3a4m_A L-seryl-tRNA(SEC) kinas 92.6 0.067 2.3E-06 54.2 3.7 24 177-200 4-27 (260)
347 3tlx_A Adenylate kinase 2; str 92.5 0.1 3.5E-06 52.2 4.9 24 176-199 28-51 (243)
348 2if2_A Dephospho-COA kinase; a 92.5 0.06 2.1E-06 52.2 3.1 21 179-199 3-23 (204)
349 1jjv_A Dephospho-COA kinase; P 92.5 0.068 2.3E-06 52.0 3.5 22 178-199 3-24 (206)
350 2j37_W Signal recognition part 92.5 0.9 3.1E-05 50.3 12.8 26 175-200 99-124 (504)
351 2hf9_A Probable hydrogenase ni 92.5 0.099 3.4E-06 51.6 4.7 25 176-200 37-61 (226)
352 1lvg_A Guanylate kinase, GMP k 92.4 0.05 1.7E-06 52.6 2.3 24 177-200 4-27 (198)
353 1xjc_A MOBB protein homolog; s 92.4 0.11 3.9E-06 48.0 4.6 25 176-200 3-27 (169)
354 2plr_A DTMP kinase, probable t 92.4 0.075 2.5E-06 51.9 3.7 24 177-200 4-27 (213)
355 2grj_A Dephospho-COA kinase; T 92.4 0.082 2.8E-06 50.5 3.8 24 176-199 11-34 (192)
356 2pez_A Bifunctional 3'-phospho 92.4 0.078 2.7E-06 50.2 3.7 25 176-200 4-28 (179)
357 1htw_A HI0065; nucleotide-bind 92.4 0.085 2.9E-06 48.5 3.7 25 176-200 32-56 (158)
358 2iyv_A Shikimate kinase, SK; t 92.4 0.053 1.8E-06 51.6 2.4 21 179-199 4-24 (184)
359 1cke_A CK, MSSA, protein (cyti 92.3 0.067 2.3E-06 52.9 3.3 22 178-199 6-27 (227)
360 3bgw_A DNAB-like replicative h 92.3 0.69 2.4E-05 50.7 11.5 53 176-232 196-248 (444)
361 1ls1_A Signal recognition part 92.3 0.47 1.6E-05 48.8 9.6 24 177-200 98-121 (295)
362 2pt5_A Shikimate kinase, SK; a 92.2 0.073 2.5E-06 49.7 3.2 21 179-199 2-22 (168)
363 3cmu_A Protein RECA, recombina 92.2 0.23 7.9E-06 63.7 8.5 84 176-266 1426-1515(2050)
364 2cdn_A Adenylate kinase; phosp 92.2 0.073 2.5E-06 51.5 3.3 24 176-199 19-42 (201)
365 3e1s_A Exodeoxyribonuclease V, 92.2 0.27 9.1E-06 55.9 8.3 104 178-294 205-314 (574)
366 2q6t_A DNAB replication FORK h 92.2 0.55 1.9E-05 51.6 10.7 55 176-233 199-253 (444)
367 3aez_A Pantothenate kinase; tr 92.1 0.082 2.8E-06 55.0 3.7 26 175-200 88-113 (312)
368 1nn5_A Similar to deoxythymidy 92.1 0.11 3.8E-06 50.8 4.5 24 177-200 9-32 (215)
369 1qf9_A UMP/CMP kinase, protein 92.1 0.079 2.7E-06 50.8 3.4 24 176-199 5-28 (194)
370 1e6c_A Shikimate kinase; phosp 92.1 0.065 2.2E-06 50.3 2.7 22 178-199 3-24 (173)
371 2bwj_A Adenylate kinase 5; pho 92.1 0.074 2.5E-06 51.3 3.1 23 178-200 13-35 (199)
372 2jeo_A Uridine-cytidine kinase 92.0 0.089 3.1E-06 52.8 3.7 25 176-200 24-48 (245)
373 3rfe_A Platelet glycoprotein I 92.0 0.22 7.7E-06 43.9 5.8 53 595-650 11-66 (130)
374 1znw_A Guanylate kinase, GMP k 91.9 0.077 2.6E-06 51.6 3.0 25 176-200 19-43 (207)
375 2z0h_A DTMP kinase, thymidylat 91.9 0.24 8E-06 47.6 6.6 22 179-200 2-23 (197)
376 4a74_A DNA repair and recombin 91.9 0.22 7.4E-06 49.3 6.4 45 176-220 24-72 (231)
377 2pbr_A DTMP kinase, thymidylat 91.8 0.085 2.9E-06 50.6 3.2 22 179-200 2-23 (195)
378 1ny5_A Transcriptional regulat 91.8 0.77 2.6E-05 49.4 11.1 129 151-295 138-281 (387)
379 1s96_A Guanylate kinase, GMP k 91.8 0.081 2.8E-06 51.8 3.0 25 176-200 15-39 (219)
380 1sq5_A Pantothenate kinase; P- 91.8 0.17 5.7E-06 52.7 5.6 25 175-199 78-102 (308)
381 2bbw_A Adenylate kinase 4, AK4 91.8 0.085 2.9E-06 53.0 3.2 23 177-199 27-49 (246)
382 2wsm_A Hydrogenase expression/ 91.8 0.11 3.7E-06 51.1 4.0 39 156-200 15-53 (221)
383 2vli_A Antibiotic resistance p 91.7 0.062 2.1E-06 51.1 2.1 23 177-199 5-27 (183)
384 1j8m_F SRP54, signal recogniti 91.7 0.56 1.9E-05 48.2 9.4 38 177-216 98-135 (297)
385 1aky_A Adenylate kinase; ATP:A 91.7 0.083 2.9E-06 52.0 3.1 23 177-199 4-26 (220)
386 1z6g_A Guanylate kinase; struc 91.7 0.07 2.4E-06 52.4 2.5 24 177-200 23-46 (218)
387 2yhs_A FTSY, cell division pro 91.7 0.35 1.2E-05 52.9 8.1 42 176-220 292-333 (503)
388 3jvv_A Twitching mobility prot 91.6 0.083 2.9E-06 56.0 3.1 110 177-299 123-234 (356)
389 3dzd_A Transcriptional regulat 91.6 0.31 1.1E-05 52.1 7.5 120 150-282 129-248 (368)
390 3vr4_D V-type sodium ATPase su 91.6 0.15 5E-06 55.0 4.9 86 178-265 152-257 (465)
391 2wwf_A Thymidilate kinase, put 91.5 0.088 3E-06 51.4 2.9 24 177-200 10-33 (212)
392 1g41_A Heat shock protein HSLU 91.5 0.14 4.7E-06 55.6 4.6 51 150-200 15-73 (444)
393 3fb4_A Adenylate kinase; psych 91.4 0.1 3.4E-06 51.2 3.3 21 179-199 2-22 (216)
394 2f6r_A COA synthase, bifunctio 91.4 0.11 3.8E-06 53.2 3.7 24 176-199 74-97 (281)
395 1m7g_A Adenylylsulfate kinase; 91.3 0.12 4.1E-06 50.4 3.7 25 176-200 24-48 (211)
396 4e22_A Cytidylate kinase; P-lo 91.3 0.1 3.5E-06 52.6 3.2 23 177-199 27-49 (252)
397 1zd8_A GTP:AMP phosphotransfer 91.3 0.1 3.4E-06 51.7 3.1 23 177-199 7-29 (227)
398 3dl0_A Adenylate kinase; phosp 91.2 0.11 3.7E-06 51.0 3.3 21 179-199 2-22 (216)
399 3gqb_B V-type ATP synthase bet 91.2 0.15 5.2E-06 54.8 4.5 89 177-265 147-260 (464)
400 1rj9_A FTSY, signal recognitio 91.2 0.097 3.3E-06 54.2 2.9 25 176-200 101-125 (304)
401 1vht_A Dephospho-COA kinase; s 91.1 0.13 4.4E-06 50.5 3.7 23 177-199 4-26 (218)
402 2ged_A SR-beta, signal recogni 91.1 0.15 5.2E-06 48.7 4.2 25 176-200 47-71 (193)
403 2v54_A DTMP kinase, thymidylat 91.1 0.11 3.6E-06 50.4 3.1 24 177-200 4-27 (204)
404 2pt7_A CAG-ALFA; ATPase, prote 91.0 0.35 1.2E-05 50.6 7.1 105 178-297 172-276 (330)
405 2r9v_A ATP synthase subunit al 91.0 0.28 9.7E-06 53.4 6.4 95 162-265 165-276 (515)
406 1zak_A Adenylate kinase; ATP:A 90.8 0.095 3.2E-06 51.6 2.4 24 177-200 5-28 (222)
407 1tf7_A KAIC; homohexamer, hexa 90.8 0.19 6.6E-06 56.8 5.3 25 176-200 280-304 (525)
408 3p32_A Probable GTPase RV1496/ 90.8 0.42 1.4E-05 50.8 7.6 38 159-200 65-102 (355)
409 2i3b_A HCR-ntpase, human cance 90.8 0.11 3.6E-06 49.6 2.6 23 179-201 3-25 (189)
410 3llm_A ATP-dependent RNA helic 90.8 0.85 2.9E-05 45.1 9.5 23 178-200 77-99 (235)
411 3b9q_A Chloroplast SRP recepto 90.8 0.14 4.8E-06 52.9 3.7 25 176-200 99-123 (302)
412 2qe7_A ATP synthase subunit al 90.7 0.28 9.7E-06 53.4 6.2 95 162-265 152-263 (502)
413 3k1j_A LON protease, ATP-depen 90.6 0.18 6.2E-06 58.0 4.9 43 150-200 41-83 (604)
414 3cmu_A Protein RECA, recombina 90.6 0.44 1.5E-05 61.3 8.5 85 176-267 382-472 (2050)
415 2ck3_A ATP synthase subunit al 90.6 0.4 1.4E-05 52.4 7.1 99 162-265 152-271 (510)
416 3d3q_A TRNA delta(2)-isopenten 90.5 0.14 4.9E-06 53.2 3.5 23 178-200 8-30 (340)
417 3be4_A Adenylate kinase; malar 90.4 0.12 3.9E-06 50.8 2.6 23 178-200 6-28 (217)
418 2dr3_A UPF0273 protein PH0284; 90.4 0.24 8.1E-06 49.6 5.1 40 176-217 22-61 (247)
419 3hjn_A DTMP kinase, thymidylat 90.4 0.5 1.7E-05 45.2 7.1 22 179-200 2-23 (197)
420 3ake_A Cytidylate kinase; CMP 90.4 0.14 4.9E-06 49.7 3.3 21 179-199 4-24 (208)
421 3r20_A Cytidylate kinase; stru 90.4 0.14 5E-06 50.3 3.3 23 177-199 9-31 (233)
422 1gtv_A TMK, thymidylate kinase 90.4 0.08 2.7E-06 51.8 1.4 22 179-200 2-23 (214)
423 3end_A Light-independent proto 90.4 0.32 1.1E-05 50.6 6.2 42 174-217 38-79 (307)
424 2ehv_A Hypothetical protein PH 90.4 0.14 4.7E-06 51.5 3.2 24 176-199 29-52 (251)
425 2eyu_A Twitching motility prot 90.4 0.25 8.7E-06 49.8 5.1 25 176-200 24-48 (261)
426 1zu4_A FTSY; GTPase, signal re 90.3 0.27 9.1E-06 51.2 5.4 25 176-200 104-128 (320)
427 3nwj_A ATSK2; P loop, shikimat 90.3 0.12 4.1E-06 51.7 2.7 22 178-199 49-70 (250)
428 3lnc_A Guanylate kinase, GMP k 90.3 0.086 2.9E-06 52.3 1.6 23 177-199 27-50 (231)
429 2f1r_A Molybdopterin-guanine d 90.3 0.088 3E-06 49.2 1.5 23 178-200 3-25 (171)
430 2c61_A A-type ATP synthase non 90.2 0.2 6.8E-06 54.3 4.4 89 177-265 152-258 (469)
431 3tif_A Uncharacterized ABC tra 90.2 0.14 4.7E-06 50.9 2.9 24 176-199 30-53 (235)
432 1e4v_A Adenylate kinase; trans 90.1 0.15 5E-06 49.9 3.1 21 179-199 2-22 (214)
433 3b5x_A Lipid A export ATP-bind 90.1 1.1 3.7E-05 51.3 10.8 25 176-200 368-392 (582)
434 2onk_A Molybdate/tungstate ABC 90.1 0.14 4.7E-06 51.0 2.9 22 178-199 25-46 (240)
435 2xb4_A Adenylate kinase; ATP-b 90.1 0.15 5.2E-06 50.1 3.2 21 179-199 2-22 (223)
436 3a8t_A Adenylate isopentenyltr 90.1 0.18 6.1E-06 52.3 3.8 24 176-199 39-62 (339)
437 3crm_A TRNA delta(2)-isopenten 90.1 0.16 5.6E-06 52.5 3.5 23 177-199 5-27 (323)
438 2r8r_A Sensor protein; KDPD, P 90.1 0.49 1.7E-05 45.9 6.6 105 177-295 6-126 (228)
439 2wji_A Ferrous iron transport 90.1 0.19 6.6E-06 46.6 3.7 24 177-200 3-26 (165)
440 3exa_A TRNA delta(2)-isopenten 90.0 0.18 6.1E-06 51.6 3.6 23 177-199 3-25 (322)
441 3sr0_A Adenylate kinase; phosp 90.0 0.16 5.6E-06 49.0 3.3 22 179-200 2-23 (206)
442 2pcj_A ABC transporter, lipopr 90.0 0.15 5E-06 50.2 3.0 23 177-199 30-52 (224)
443 1yrb_A ATP(GTP)binding protein 90.0 0.18 6.3E-06 51.0 3.8 27 174-200 11-37 (262)
444 3mfy_A V-type ATP synthase alp 89.9 0.75 2.6E-05 50.6 8.5 59 161-228 216-275 (588)
445 1np6_A Molybdopterin-guanine d 89.9 0.16 5.4E-06 47.5 2.9 25 176-200 5-29 (174)
446 4eaq_A DTMP kinase, thymidylat 89.8 0.35 1.2E-05 47.7 5.5 25 176-200 25-49 (229)
447 1nlf_A Regulatory protein REPA 89.7 0.3 1E-05 50.0 5.2 24 177-200 30-53 (279)
448 2og2_A Putative signal recogni 89.7 0.3 1E-05 51.6 5.1 25 176-200 156-180 (359)
449 1mv5_A LMRA, multidrug resista 89.7 0.19 6.5E-06 50.2 3.5 25 176-200 27-51 (243)
450 3foz_A TRNA delta(2)-isopenten 89.6 0.21 7.3E-06 50.9 3.9 24 176-199 9-32 (316)
451 2zej_A Dardarin, leucine-rich 89.6 0.16 5.6E-06 48.1 2.9 22 179-200 4-25 (184)
452 1oix_A RAS-related protein RAB 89.6 0.18 6E-06 48.2 3.1 24 177-200 29-52 (191)
453 3b85_A Phosphate starvation-in 89.6 0.13 4.5E-06 49.8 2.2 23 178-200 23-45 (208)
454 1ak2_A Adenylate kinase isoenz 89.6 0.18 6E-06 50.1 3.2 24 177-200 16-39 (233)
455 3gfo_A Cobalt import ATP-bindi 89.5 0.18 6E-06 51.3 3.1 23 177-199 34-56 (275)
456 1b0u_A Histidine permease; ABC 89.5 0.17 5.7E-06 51.2 2.9 24 176-199 31-54 (262)
457 3ld9_A DTMP kinase, thymidylat 89.4 0.66 2.3E-05 45.2 7.1 27 175-201 19-45 (223)
458 2vp4_A Deoxynucleoside kinase; 89.4 0.21 7.2E-06 49.4 3.6 25 175-199 18-42 (230)
459 2olj_A Amino acid ABC transpor 89.3 0.18 6E-06 50.9 2.9 24 176-199 49-72 (263)
460 1sgw_A Putative ABC transporte 89.3 0.16 5.5E-06 49.4 2.6 24 177-200 35-58 (214)
461 2j9r_A Thymidine kinase; TK1, 89.2 0.44 1.5E-05 45.7 5.5 110 176-296 27-138 (214)
462 1ji0_A ABC transporter; ATP bi 89.2 0.19 6.6E-06 50.0 3.2 23 177-199 32-54 (240)
463 1ltq_A Polynucleotide kinase; 89.2 0.2 6.9E-06 52.0 3.5 22 178-199 3-24 (301)
464 2qmh_A HPR kinase/phosphorylas 89.2 0.21 7.1E-06 47.3 3.1 24 177-200 34-57 (205)
465 4g1u_C Hemin import ATP-bindin 89.1 0.19 6.6E-06 50.8 3.1 24 176-199 36-59 (266)
466 1g6h_A High-affinity branched- 89.1 0.2 6.7E-06 50.5 3.2 23 177-199 33-55 (257)
467 3cmw_A Protein RECA, recombina 89.1 0.67 2.3E-05 58.8 8.4 85 176-267 382-472 (1706)
468 2dyk_A GTP-binding protein; GT 89.1 0.24 8.1E-06 45.5 3.5 23 178-200 2-24 (161)
469 1u0j_A DNA replication protein 89.0 0.35 1.2E-05 48.3 4.8 38 159-200 90-127 (267)
470 3zvl_A Bifunctional polynucleo 89.0 0.2 6.9E-06 54.5 3.4 25 176-200 257-281 (416)
471 2d2e_A SUFC protein; ABC-ATPas 89.0 0.21 7.2E-06 50.1 3.2 23 177-199 29-51 (250)
472 2ff7_A Alpha-hemolysin translo 88.9 0.21 7.1E-06 50.0 3.2 23 177-199 35-57 (247)
473 1vpl_A ABC transporter, ATP-bi 88.9 0.19 6.6E-06 50.4 2.9 24 176-199 40-63 (256)
474 2v9p_A Replication protein E1; 88.9 0.19 6.5E-06 51.7 2.9 25 176-200 125-149 (305)
475 2f9l_A RAB11B, member RAS onco 88.9 0.22 7.5E-06 47.9 3.3 24 177-200 5-28 (199)
476 2wjg_A FEOB, ferrous iron tran 88.9 0.26 9E-06 46.7 3.8 25 176-200 6-30 (188)
477 2ghi_A Transport protein; mult 88.8 0.2 6.8E-06 50.5 2.9 25 176-200 45-69 (260)
478 2zu0_C Probable ATP-dependent 88.8 0.22 7.5E-06 50.5 3.2 24 176-199 45-68 (267)
479 1a7j_A Phosphoribulokinase; tr 88.7 0.11 3.7E-06 53.5 0.9 24 176-199 4-27 (290)
480 1svm_A Large T antigen; AAA+ f 88.7 0.21 7.2E-06 53.2 3.2 24 176-199 168-191 (377)
481 3vr4_A V-type sodium ATPase ca 88.7 0.97 3.3E-05 49.9 8.3 58 161-227 221-279 (600)
482 2qi9_C Vitamin B12 import ATP- 88.7 0.22 7.6E-06 49.7 3.1 23 177-199 26-48 (249)
483 2ixe_A Antigen peptide transpo 88.7 0.2 7E-06 50.8 2.9 25 176-200 44-68 (271)
484 3oaa_A ATP synthase subunit al 88.6 0.98 3.3E-05 49.1 8.2 86 177-266 162-264 (513)
485 2fz4_A DNA repair protein RAD2 88.6 0.75 2.6E-05 45.6 7.0 101 180-294 111-227 (237)
486 1fx0_A ATP synthase alpha chai 88.6 0.34 1.2E-05 52.8 4.7 86 177-266 163-265 (507)
487 4edh_A DTMP kinase, thymidylat 88.5 0.83 2.9E-05 44.3 7.1 24 177-200 6-29 (213)
488 3f9v_A Minichromosome maintena 88.4 0.15 5.1E-06 58.3 1.9 22 179-200 329-350 (595)
489 3cmw_A Protein RECA, recombina 88.4 0.63 2.2E-05 59.0 7.6 83 176-265 1430-1518(1706)
490 2yz2_A Putative ABC transporte 88.4 0.22 7.4E-06 50.5 2.9 24 176-199 32-55 (266)
491 2nq2_C Hypothetical ABC transp 88.4 0.23 8E-06 49.8 3.1 24 177-200 31-54 (253)
492 1z2a_A RAS-related protein RAB 88.3 0.31 1.1E-05 45.0 3.8 25 176-200 4-28 (168)
493 2ihy_A ABC transporter, ATP-bi 88.3 0.24 8.2E-06 50.5 3.1 24 176-199 46-69 (279)
494 1q3t_A Cytidylate kinase; nucl 88.2 0.25 8.6E-06 49.1 3.2 25 175-199 14-38 (236)
495 2gj8_A MNME, tRNA modification 88.1 0.28 9.7E-06 45.8 3.4 23 178-200 5-27 (172)
496 2zts_A Putative uncharacterize 88.1 0.43 1.5E-05 47.7 5.0 50 176-228 29-78 (251)
497 1w36_D RECD, exodeoxyribonucle 88.1 1.1 3.8E-05 51.4 8.9 23 178-200 165-187 (608)
498 2ocp_A DGK, deoxyguanosine kin 88.0 0.29 9.7E-06 48.9 3.5 24 177-200 2-25 (241)
499 1cp2_A CP2, nitrogenase iron p 88.0 0.59 2E-05 47.4 6.0 37 178-216 2-38 (269)
500 3vkw_A Replicase large subunit 87.9 1.1 3.6E-05 48.4 8.0 26 174-199 158-183 (446)
No 1
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=100.00 E-value=1.7e-44 Score=417.02 Aligned_cols=316 Identities=20% Similarity=0.267 Sum_probs=252.8
Q ss_pred ecchhhHHHHHHHHhccCcccCCCeEEEEEEccCCChHHHHHHHHhh--hhhhhcccCeEEEEEeCCCC--CHHHHHHHH
Q 002308 153 CGRVGERNALLSMLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACN--HVEVKREFDKTLWVCVSETF--DEFRIAKAM 228 (938)
Q Consensus 153 vGr~~~~~~l~~~l~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~v~~--~~~~~~~f~~~~wv~~~~~~--~~~~~~~~i 228 (938)
+||+.++++|.++|.... ....++|+|+||||+||||||+++|+ +.+++.+|+.++||++++.. +...++..|
T Consensus 131 ~GR~~~~~~l~~~L~~~~---~~~~~vv~I~G~gGvGKTtLA~~v~~~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~~~i 207 (549)
T 2a5y_B 131 YIREYHVDRVIKKLDEMC---DLDSFFLFLHGRAGSGKSVIASQALSKSDQLIGINYDSIVWLKDSGTAPKSTFDLFTDI 207 (549)
T ss_dssp CCCHHHHHHHHHHHHHHT---TSSSEEEEEECSTTSSHHHHHHHHHHHCSSTBTTTBSEEEEEECCCCSTTHHHHHHHHH
T ss_pred CCchHHHHHHHHHHhccc---CCCceEEEEEcCCCCCHHHHHHHHHHhhhHHHhccCCcEEEEEECCCCCCCHHHHHHHH
Confidence 599999999999997542 33679999999999999999999998 56788999999999999875 789999999
Q ss_pred HHHhcCCCC-------CCCcHHHHHHHHHHHhcCc-eEEEEEecCCCCCccChhHHHHhhhCCCCCcEEEEEcCChhhhh
Q 002308 229 LEALTGSTS-------NLNALQSLLISIDESIAGK-RFLLVLDDVWDGDYIKWEPFYRCLKKGLHGSKILITTRKESIVS 300 (938)
Q Consensus 229 ~~~l~~~~~-------~~~~~~~~~~~l~~~l~~~-~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtr~~~v~~ 300 (938)
+.+++.... +..+.+.+...+++.++++ ||||||||||+.+...|.. .+||+||||||++.++.
T Consensus 208 l~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~L~~~kr~LlVLDdv~~~~~~~~~~--------~~gs~ilvTTR~~~v~~ 279 (549)
T 2a5y_B 208 LLMLKSEDDLLNFPSVEHVTSVVLKRMICNALIDRPNTLFVFDDVVQEETIRWAQ--------ELRLRCLVTTRDVEISN 279 (549)
T ss_dssp HHHHTTTSCCTTCCCCTTCCHHHHHHHHHHHHTTSTTEEEEEEEECCHHHHHHHH--------HTTCEEEEEESBGGGGG
T ss_pred HHHHhcCcccccccccccccHHHHHHHHHHHHcCCCcEEEEEECCCCchhhcccc--------cCCCEEEEEcCCHHHHH
Confidence 999986421 1224466788899999996 9999999999864322321 17999999999999998
Q ss_pred hhc-CCceEeCCCCChHHHHHHHHHhhcCCCCCchhhHHHHHHHHHHHhcCCChhHHHHHHhhhcCCCCHHHHHHHHhcc
Q 002308 301 MMR-STDIISIEELAEEECWVLFKRLAFFGRSTEECEKLEQIGQRIARKCKGLPLAAKTMGSLMSSKKTEEEWKRILNSD 379 (938)
Q Consensus 301 ~~~-~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~~~~~l~~~~~~~~w~~~~~~~ 379 (938)
.++ ....+++++|+.++||+||.+++++... ++.+.+++++|+++|+|+|||++++|+.++.+ . .+|...+...
T Consensus 280 ~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~---~~~~~~~~~~I~~~c~GlPLAl~~~g~~l~~~-~-w~~~~~l~~~ 354 (549)
T 2a5y_B 280 AASQTCEFIEVTSLEIDECYDFLEAYGMPMPV---GEKEEDVLNKTIELSSGNPATLMMFFKSCEPK-T-FEKMAQLNNK 354 (549)
T ss_dssp GCCSCEEEEECCCCCHHHHHHHHHHTSCCCC-----CHHHHHHHHHHHHHTTCHHHHHHHHTTCCSS-S-HHHHHHHHHH
T ss_pred HcCCCCeEEECCCCCHHHHHHHHHHHhcCCCC---chhHHHHHHHHHHHhCCChHHHHHHHHHhccc-h-HHHHHHhHHH
Confidence 876 3468999999999999999999876432 46778889999999999999999999999765 3 2333333322
Q ss_pred ccccccccccchhhHHhhhccCChhHHHHHh-----------HhccCCCCcccChHHHHHHHHHc--CCCcchhccc-cc
Q 002308 380 LWKVEEIEKGVLTPLWLSYNDLPSRVKRCFS-----------YCAVFPKDYNIKKDELITLWMAQ--GYLSAEAAEQ-DE 445 (938)
Q Consensus 380 ~~~~~~~~~~~~~~l~~sy~~L~~~~k~~f~-----------~~~~fp~~~~i~~~~li~~w~a~--g~i~~~~~~~-~~ 445 (938)
.+.. ...++..++.+||+.||.++|.||+ |||+||+++.|+ +..|+|+ ||+.. .. ..
T Consensus 355 l~~~--~~~~i~~~l~~Sy~~L~~~lk~~f~~Ls~~er~l~~~ls~fp~~~~i~----i~~w~a~~~G~i~~---~~~~~ 425 (549)
T 2a5y_B 355 LESR--GLVGVECITPYSYKSLAMALQRCVEVLSDEDRSALAFAVVMPPGVDIP----VKLWSCVIPVDICS---NEEEQ 425 (549)
T ss_dssp HHHH--CSSTTCCCSSSSSSSHHHHHHHHHHTSCHHHHHHTTGGGSSCTTCCEE----HHHHHHHSCC----------CC
T ss_pred hhcc--cHHHHHHHHhcccccccHHHHHHHhccchhhhhHhhheeeeCCCCeee----eeeeeeeccceecc---CCCCC
Confidence 2211 2456889999999999999999999 999999999998 8899999 99986 33 45
Q ss_pred hHHHHHHHHHHHHHhcccccccccCCCCceeEEEechhHHHHHHHhhcccce
Q 002308 446 EMETIGEEYFGILASRSFFQEFKKSYDNRIIACKMHDMVHDLAQFVSENECF 497 (938)
Q Consensus 446 ~~~~~~~~~~~~L~~~~ll~~~~~~~~~~~~~~~mhdlv~~~~~~~~~~e~~ 497 (938)
..++.++ ++++|++++|++....+ ...+|+|||++|++++.++.+++.
T Consensus 426 ~~~~~~~-~l~~L~~rsLl~~~~~~---~~~~~~mHdlv~~~a~~~~~~~~~ 473 (549)
T 2a5y_B 426 LDDEVAD-RLKRLSKRGALLSGKRM---PVLTFKIDHIIHMFLKHVVDAQTI 473 (549)
T ss_dssp CTHHHHH-HHHHTTTBSSCSEEECS---SSCEEECCHHHHHHHHTTSCTHHH
T ss_pred CHHHHHH-HHHHHHHcCCeeEecCC---CceEEEeChHHHHHHHHHHHHHHH
Confidence 5677777 99999999999976543 345799999999999988877653
No 2
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=100.00 E-value=1e-35 Score=343.92 Aligned_cols=285 Identities=19% Similarity=0.217 Sum_probs=224.1
Q ss_pred ceecchhhHHHHHHHHhccCcccCCCeEEEEEEccCCChHHHHHHHHhhhhhhhcccCe-EEEEEeCCCCCHHHHHHHHH
Q 002308 151 EICGRVGERNALLSMLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNHVEVKREFDK-TLWVCVSETFDEFRIAKAML 229 (938)
Q Consensus 151 ~~vGr~~~~~~l~~~l~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~-~~wv~~~~~~~~~~~~~~i~ 229 (938)
..|||++++++|.++|... ++.++|+|+||||+||||||++++++.+++.+|+. ++|+++++.++...++..|+
T Consensus 129 ~~VGRe~eLeeL~elL~~~-----d~~RVV~IvGmGGIGKTTLAk~Vy~d~rV~~~Fd~gV~WVsVs~~~d~~~IL~~Ll 203 (1221)
T 1vt4_I 129 YNVSRLQPYLKLRQALLEL-----RPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQ 203 (1221)
T ss_dssp SCCCCHHHHHHHHHHHHHC-----CSSCEEEECCSTTSSHHHHHHHHHHHCHHHHHHSSCEEEEECCCSSSHHHHHHHHH
T ss_pred CCCCcHHHHHHHHHHHhcc-----CCCeEEEEEcCCCccHHHHHHHHHHhhHHHHhCCCcEEEEEeCCCCCHHHHHHHHH
Confidence 3599999999999999742 24689999999999999999999998778899986 99999999999888888888
Q ss_pred HHhcCCC------CC-----CCcHHHHHHHHHHHh---cCceEEEEEecCCCCCccChhHHHHhhhCCCCCcEEEEEcCC
Q 002308 230 EALTGST------SN-----LNALQSLLISIDESI---AGKRFLLVLDDVWDGDYIKWEPFYRCLKKGLHGSKILITTRK 295 (938)
Q Consensus 230 ~~l~~~~------~~-----~~~~~~~~~~l~~~l---~~~~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtr~ 295 (938)
+.+.... .+ ..+.+++...+++.+ .++|+||||||||+. ..|+. ++ +||+||||||+
T Consensus 204 ~lL~~i~~~~~~~~d~~~~ip~~leeL~e~Lr~lL~~l~~KRvLLVLDDVwd~--eqLe~----f~---pGSRILVTTRd 274 (1221)
T 1vt4_I 204 KLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNA--KAWNA----FN---LSCKILLTTRF 274 (1221)
T ss_dssp HHHHHHCSSSTTTSCCCSSHHHHHHHHHHHHHHHHHHSTTSSCEEEEESCCCH--HHHHH----HH---SSCCEEEECSC
T ss_pred HHHhhcCcccccccccccCCCCCHHHHHHHHHHHHHhhcCCCEEEEEeCcChH--HHHHh----hC---CCeEEEEeccC
Confidence 7643210 01 112345566666655 689999999999984 33433 33 79999999999
Q ss_pred hhhhhhhcCCceEeCC------CCChHHHHHHHHHhhcCCCCCchhhHHHHHHHHHHHhcCCChhHHHHHHhhhcCCC-C
Q 002308 296 ESIVSMMRSTDIISIE------ELAEEECWVLFKRLAFFGRSTEECEKLEQIGQRIARKCKGLPLAAKTMGSLMSSKK-T 368 (938)
Q Consensus 296 ~~v~~~~~~~~~~~l~------~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~~~~~l~~~~-~ 368 (938)
+.++..+.....+.++ +|+.+||++||.+.. +... .++..++ |+|+||||.++|+.|+.+. +
T Consensus 275 ~~Va~~l~g~~vy~LeL~d~dL~LS~eEA~eLF~~~~-g~~~-------eeL~~eI---CgGLPLALkLaGs~Lr~k~~s 343 (1221)
T 1vt4_I 275 KQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYL-DCRP-------QDLPREV---LTTNPRRLSIIAESIRDGLAT 343 (1221)
T ss_dssp SHHHHHHHHHSSCEEEECSSSSCCCHHHHHHHHHHHH-CCCT-------TTHHHHH---CCCCHHHHHHHHHHHHHSCSS
T ss_pred hHHHHhcCCCeEEEecCccccCCcCHHHHHHHHHHHc-CCCH-------HHHHHHH---hCCCHHHHHHHHHHHhCCCCC
Confidence 9988655443456666 999999999999984 2221 1122333 9999999999999998764 6
Q ss_pred HHHHHHHHhccccccccccccchhhHHhhhccCChhH-HHHHhHhccCCCCcccChHHHHHHHHHcCCCcchhccccchH
Q 002308 369 EEEWKRILNSDLWKVEEIEKGVLTPLWLSYNDLPSRV-KRCFSYCAVFPKDYNIKKDELITLWMAQGYLSAEAAEQDEEM 447 (938)
Q Consensus 369 ~~~w~~~~~~~~~~~~~~~~~~~~~l~~sy~~L~~~~-k~~f~~~~~fp~~~~i~~~~li~~w~a~g~i~~~~~~~~~~~ 447 (938)
...|... ....+..++.+||+.||++. |.||++||+||+++.|+.+.++.+|+++| .
T Consensus 344 ~eeW~~~----------~~~~I~aaLelSYd~Lp~eelK~cFL~LAIFPed~~I~~elLa~LW~aeG---e--------- 401 (1221)
T 1vt4_I 344 WDNWKHV----------NCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVI---K--------- 401 (1221)
T ss_dssp HHHHHHC----------SCHHHHHHHHHHHHHSCTTHHHHHHHHTTSSCTTSCEEHHHHHHHHCSSC---S---------
T ss_pred HHHHhcC----------ChhHHHHHHHHHHHhCCHHHHHHHHHHHhCCCCCCCCCHHHHHHHhcCCC---H---------
Confidence 7788753 12458899999999999999 99999999999999999999999998765 1
Q ss_pred HHHHHHHHHHHHhcccccccccCCCCceeEEEechhHHHHH
Q 002308 448 ETIGEEYFGILASRSFFQEFKKSYDNRIIACKMHDMVHDLA 488 (938)
Q Consensus 448 ~~~~~~~~~~L~~~~ll~~~~~~~~~~~~~~~mhdlv~~~~ 488 (938)
+.+..++++|++++|++.. +....|+|||++++++
T Consensus 402 -edAe~~L~eLvdRSLLq~d-----~~~~rYrMHDLllELr 436 (1221)
T 1vt4_I 402 -SDVMVVVNKLHKYSLVEKQ-----PKESTISIPSIYLELK 436 (1221)
T ss_dssp -HHHHHHHHHHHTSSSSSBC-----SSSSEEBCCCHHHHHH
T ss_pred -HHHHHHHHHHHhhCCEEEe-----CCCCEEEehHHHHHHh
Confidence 2367789999999999873 1224689999999865
No 3
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=100.00 E-value=9.9e-35 Score=374.52 Aligned_cols=314 Identities=20% Similarity=0.271 Sum_probs=245.5
Q ss_pred CCCCCCceecchhhHHHHHHHHhccCcccCCCeEEEEEEccCCChHHHHHHHHhhhhhh-hccc-CeEEEEEeCCCCC--
Q 002308 145 SLIDEEEICGRVGERNALLSMLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNHVEV-KREF-DKTLWVCVSETFD-- 220 (938)
Q Consensus 145 ~~~~~~~~vGr~~~~~~l~~~l~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~v~~~~~~-~~~f-~~~~wv~~~~~~~-- 220 (938)
.+..++.||||++++++|.++|.... ...++|+|+||||+||||||++++++.+. ..+| +.++||++++..+
T Consensus 119 ~p~~~~~~vgR~~~~~~l~~~l~~~~----~~~~~v~i~G~gG~GKTtLa~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 194 (1249)
T 3sfz_A 119 VPQRPVIFVTRKKLVHAIQQKLWKLN----GEPGWVTIYGMAGCGKSVLAAEAVRDHSLLEGCFSGGVHWVSIGKQDKSG 194 (1249)
T ss_dssp CCCCCSSCCCCHHHHHHHHHHHHTTT----TSCEEEEEECSTTSSHHHHHHHHTCCHHHHTTTSTTCEEEEECCSCCHHH
T ss_pred CCCCCceeccHHHHHHHHHHHHhhcc----CCCCEEEEEeCCCCCHHHHHHHHhcChhHHHhhCCCeEEEEEECCcCchH
Confidence 44456679999999999999997543 36799999999999999999999997543 4445 6788999988543
Q ss_pred HHHHHHHHHHHhcCCC----CCCCcHHHHHHHHHHHhcCc--eEEEEEecCCCCCccChhHHHHhhhCCCCCcEEEEEcC
Q 002308 221 EFRIAKAMLEALTGST----SNLNALQSLLISIDESIAGK--RFLLVLDDVWDGDYIKWEPFYRCLKKGLHGSKILITTR 294 (938)
Q Consensus 221 ~~~~~~~i~~~l~~~~----~~~~~~~~~~~~l~~~l~~~--~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtr 294 (938)
....+..++..+.... ......+++...++..+.++ ||||||||||+.. .| ....+||+||||||
T Consensus 195 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LlvlDd~~~~~--~~-------~~~~~~~~ilvTtR 265 (1249)
T 3sfz_A 195 LLMKLQNLCMRLDQEESFSQRLPLNIEEAKDRLRVLMLRKHPRSLLILDDVWDPW--VL-------KAFDNQCQILLTTR 265 (1249)
T ss_dssp HHHHHHHHHHHHTTTCTTCSSCCSSHHHHHHHHHHHTSSSSCSCEEEEESCCCHH--HH-------TTTCSSCEEEEEES
T ss_pred HHHHHHHHHHHhhhhcccccCCCCCHHHHHHHHHHHHhccCCCEEEEEecCCCHH--HH-------HhhcCCCEEEEEcC
Confidence 3445677777776532 22356778888888888877 9999999999752 22 22368999999999
Q ss_pred Chhhhhh-hcCCceEeCCC-CChHHHHHHHHHhhcCCCCCchhhHHHHHHHHHHHhcCCChhHHHHHHhhhcCCCCHHHH
Q 002308 295 KESIVSM-MRSTDIISIEE-LAEEECWVLFKRLAFFGRSTEECEKLEQIGQRIARKCKGLPLAAKTMGSLMSSKKTEEEW 372 (938)
Q Consensus 295 ~~~v~~~-~~~~~~~~l~~-L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~~~~~l~~~~~~~~w 372 (938)
++.++.. ++....+++.+ |++++|++||...++... +.+.+++++|+++|+|+||||.++|++|+.+. ..|
T Consensus 266 ~~~~~~~~~~~~~~~~~~~~l~~~~a~~l~~~~~~~~~-----~~~~~~~~~i~~~~~glPLal~~~~~~l~~~~--~~~ 338 (1249)
T 3sfz_A 266 DKSVTDSVMGPKHVVPVESGLGREKGLEILSLFVNMKK-----EDLPAEAHSIIKECKGSPLVVSLIGALLRDFP--NRW 338 (1249)
T ss_dssp STTTTTTCCSCBCCEECCSSCCHHHHHHHHHHHHTSCS-----TTCCTHHHHHHHHTTTCHHHHHHHHHHHHHSS--SCH
T ss_pred CHHHHHhhcCCceEEEecCCCCHHHHHHHHHHhhCCCh-----hhCcHHHHHHHHHhCCCHHHHHHHHHHhhcCh--hHH
Confidence 9998854 45667899996 999999999999885332 23345588999999999999999999998665 246
Q ss_pred HHHHhccccc----ccc----ccccchhhHHhhhccCChhHHHHHhHhccCCCCcccChHHHHHHHHHcCCCcchhcccc
Q 002308 373 KRILNSDLWK----VEE----IEKGVLTPLWLSYNDLPSRVKRCFSYCAVFPKDYNIKKDELITLWMAQGYLSAEAAEQD 444 (938)
Q Consensus 373 ~~~~~~~~~~----~~~----~~~~~~~~l~~sy~~L~~~~k~~f~~~~~fp~~~~i~~~~li~~w~a~g~i~~~~~~~~ 444 (938)
...+...... +.. ....+..++.+||+.|+++.|.||+|||+||+++.|+.+.++.+|.++
T Consensus 339 ~~~l~~l~~~~~~~~~~~~~~~~~~~~~~l~~s~~~L~~~~~~~~~~l~~f~~~~~i~~~~~~~~~~~~----------- 407 (1249)
T 3sfz_A 339 AYYLRQLQNKQFKRIRKSSSYDYEALDEAMSISVEMLREDIKDYYTDLSILQKDVKVPTKVLCVLWDLE----------- 407 (1249)
T ss_dssp HHHHHHHHSCCCCCSSCTTCTTHHHHHHHHHHHHHTSCTTTHHHHHHGGGSCTTCCEEHHHHHHHHTCC-----------
T ss_pred HHHHHHHhhhhhhhcccccccchHHHHHHHHHHHHhCCHHHHHHHHHhCccCCCCeeCHHHHHHHhCCC-----------
Confidence 5555432111 111 113588899999999999999999999999999999999999999543
Q ss_pred chHHHHHHHHHHHHHhcccccccccCCCCceeEEEechhHHHHHHHhhccc
Q 002308 445 EEMETIGEEYFGILASRSFFQEFKKSYDNRIIACKMHDMVHDLAQFVSENE 495 (938)
Q Consensus 445 ~~~~~~~~~~~~~L~~~~ll~~~~~~~~~~~~~~~mhdlv~~~~~~~~~~e 495 (938)
++.++.++++|++++|++... .++..+|+||+++|++++..+.++
T Consensus 408 ---~~~~~~~l~~L~~~sl~~~~~---~~~~~~~~~h~l~~~~~~~~~~~~ 452 (1249)
T 3sfz_A 408 ---TEEVEDILQEFVNKSLLFCNR---NGKSFCYYLHDLQVDFLTEKNRSQ 452 (1249)
T ss_dssp ---HHHHHHHHHHHHHTTSCEEEE---SSSSEEEECCHHHHHHHHHHTGGG
T ss_pred ---HHHHHHHHHHHHhccceEEec---CCCceEEEecHHHHHHHHhhhhHH
Confidence 245678899999999998643 344567999999999999887665
No 4
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=100.00 E-value=6e-32 Score=318.01 Aligned_cols=306 Identities=21% Similarity=0.266 Sum_probs=229.7
Q ss_pred CCCceecchhhHHHHHHHHhccCcccCCCeEEEEEEccCCChHHHHHHHHhhhhhh-hccc-CeEEEEEeCCCCCHHHHH
Q 002308 148 DEEEICGRVGERNALLSMLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNHVEV-KREF-DKTLWVCVSETFDEFRIA 225 (938)
Q Consensus 148 ~~~~~vGr~~~~~~l~~~l~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~v~~~~~~-~~~f-~~~~wv~~~~~~~~~~~~ 225 (938)
.++.||||+.++++|.+++.... ...++|+|+||||+||||||.+++++.++ ..+| +.++|++++.. +...++
T Consensus 122 ~~~~~vGR~~~l~~L~~~L~~~~----~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~v~wv~~~~~-~~~~~~ 196 (591)
T 1z6t_A 122 RPVVFVTRKKLVNAIQQKLSKLK----GEPGWVTIHGMAGCGKSVLAAEAVRDHSLLEGCFPGGVHWVSVGKQ-DKSGLL 196 (591)
T ss_dssp CCSSCCCCHHHHHHHHHHHTTST----TSCEEEEEECCTTSSHHHHHHHHHCCHHHHHHHCTTCEEEEEEESC-CHHHHH
T ss_pred CCCeecccHHHHHHHHHHHhccc----CCCceEEEEcCCCCCHHHHHHHHHhchhHHHhhCCCceEEEECCCC-chHHHH
Confidence 45679999999999999997542 35789999999999999999999997655 7889 58999999865 333444
Q ss_pred HHH---HHHhcCC----CCCCCcHHHHHHHHHHHhcC--ceEEEEEecCCCCCccChhHHHHhhhCCCCCcEEEEEcCCh
Q 002308 226 KAM---LEALTGS----TSNLNALQSLLISIDESIAG--KRFLLVLDDVWDGDYIKWEPFYRCLKKGLHGSKILITTRKE 296 (938)
Q Consensus 226 ~~i---~~~l~~~----~~~~~~~~~~~~~l~~~l~~--~~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtr~~ 296 (938)
..+ +..++.. .....+.+.....+...+.+ +++||||||+|+.. . +....+|++||||||++
T Consensus 197 ~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LLVLDdv~~~~-----~----l~~l~~~~~ilvTsR~~ 267 (591)
T 1z6t_A 197 MKLQNLCTRLDQDESFSQRLPLNIEEAKDRLRILMLRKHPRSLLILDDVWDSW-----V----LKAFDSQCQILLTTRDK 267 (591)
T ss_dssp HHHHHHHHHHCSSCCSCSSCCCSHHHHHHHHHHHHHHTCTTCEEEEEEECCHH-----H----HHTTCSSCEEEEEESCG
T ss_pred HHHHHHHHHhccccccccCCCCCHHHHHHHHHHHHccCCCCeEEEEeCCCCHH-----H----HHHhcCCCeEEEECCCc
Confidence 443 4444421 12335566777778877775 78999999998642 1 22235789999999999
Q ss_pred hhhhhhcCCceEeC---CCCChHHHHHHHHHhhcCCCCCchhhHHHHHHHHHHHhcCCChhHHHHHHhhhcCCCCHHHHH
Q 002308 297 SIVSMMRSTDIISI---EELAEEECWVLFKRLAFFGRSTEECEKLEQIGQRIARKCKGLPLAAKTMGSLMSSKKTEEEWK 373 (938)
Q Consensus 297 ~v~~~~~~~~~~~l---~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~~~~~l~~~~~~~~w~ 373 (938)
.++..+.. ..+++ ++|+.+++++||...++... ....+.+.+|+++|+|+|+|+..+|+.++... ..|.
T Consensus 268 ~~~~~~~~-~~~~v~~l~~L~~~ea~~L~~~~~~~~~-----~~~~~~~~~i~~~~~G~PLal~~~a~~l~~~~--~~w~ 339 (591)
T 1z6t_A 268 SVTDSVMG-PKYVVPVESSLGKEKGLEILSLFVNMKK-----ADLPEQAHSIIKECKGSPLVVSLIGALLRDFP--NRWE 339 (591)
T ss_dssp GGGTTCCS-CEEEEECCSSCCHHHHHHHHHHHHTSCG-----GGSCTHHHHHHHHHTTCHHHHHHHHHHHHHST--TCHH
T ss_pred HHHHhcCC-CceEeecCCCCCHHHHHHHHHHHhCCCc-----ccccHHHHHHHHHhCCCcHHHHHHHHHHhcCc--hhHH
Confidence 88766432 33333 69999999999999886421 12234578999999999999999999998654 3576
Q ss_pred HHHhcccccc----c----cccccchhhHHhhhccCChhHHHHHhHhccCCCCcccChHHHHHHHHHcCCCcchhccccc
Q 002308 374 RILNSDLWKV----E----EIEKGVLTPLWLSYNDLPSRVKRCFSYCAVFPKDYNIKKDELITLWMAQGYLSAEAAEQDE 445 (938)
Q Consensus 374 ~~~~~~~~~~----~----~~~~~~~~~l~~sy~~L~~~~k~~f~~~~~fp~~~~i~~~~li~~w~a~g~i~~~~~~~~~ 445 (938)
..+....... . .....+..++..||+.||++.|.||+++|+||+++.|+.+.+...|.++
T Consensus 340 ~~l~~l~~~~~~~~~~~~~~~~~~l~~~l~~s~~~L~~~~~~~l~~la~f~~~~~i~~~~l~~l~~~~------------ 407 (591)
T 1z6t_A 340 YYLKQLQNKQFKRIRKSSSYDYEALDEAMSISVEMLREDIKDYYTDLSILQKDVKVPTKVLCILWDME------------ 407 (591)
T ss_dssp HHHHHHHSCCCCCSSCCCSSCCHHHHHHHHHHHHTSCTTTHHHHHHGGGCCTTCCEEHHHHHHHHTCC------------
T ss_pred HHHHHHHHhHHHHhhhccccchHHHHHHHHHHHHhCCHHHHHHHHHccccCCCCccCHHHHHHHhccC------------
Confidence 6554322111 1 1123578899999999999999999999999999999999999889432
Q ss_pred hHHHHHHHHHHHHHhcccccccccCCCCceeEEEechhHHHHHHHhh
Q 002308 446 EMETIGEEYFGILASRSFFQEFKKSYDNRIIACKMHDMVHDLAQFVS 492 (938)
Q Consensus 446 ~~~~~~~~~~~~L~~~~ll~~~~~~~~~~~~~~~mhdlv~~~~~~~~ 492 (938)
.+.+..++.+|++++|++... .+....|+||+++++++....
T Consensus 408 --~~~~~~~l~~L~~~~Ll~~~~---~~~~~~~~~H~lv~~~~~~~~ 449 (591)
T 1z6t_A 408 --TEEVEDILQEFVNKSLLFCDR---NGKSFRYYLHDLQVDFLTEKN 449 (591)
T ss_dssp --HHHHHHHHHHHHHTTSSEEEE---ETTEEEEECCHHHHHHHHHHT
T ss_pred --HHHHHHHHHHHHhCcCeEEec---CCCccEEEEcHHHHHHHHhhh
Confidence 123567899999999998533 234457999999999998773
No 5
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.97 E-value=1.8e-32 Score=331.72 Aligned_cols=385 Identities=20% Similarity=0.212 Sum_probs=218.8
Q ss_pred cccceEEEEccCCC-cCccccccc-CceeEEeccCCCCCCCCchhhHHHHHhccCCCeeEEecCCCCCCcccCcc-cccc
Q 002308 515 EKVRHLMLIMGKES-TFPISTCRA-KRIRSLLIEWPEFGHSSLNGEILEELFRESTSLRALDFPSFYLPLEIPRN-IEKL 591 (938)
Q Consensus 515 ~~~r~l~l~~~~~~-~~~~~~~~~-~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~n~~~~~lp~~-~~~l 591 (938)
..++++++.+|.+. ..|..+... ++|+.|.+++|.+. + ..+..|..+++|++|+|++|.+.+.+|.. ++.+
T Consensus 269 ~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~-----~-~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l 342 (768)
T 3rgz_A 269 KSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFY-----G-AVPPFFGSCSLLESLALSSNNFSGELPMDTLLKM 342 (768)
T ss_dssp TTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEE-----E-CCCGGGGGCTTCCEEECCSSEEEEECCHHHHTTC
T ss_pred CCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCC-----C-ccchHHhcCCCccEEECCCCcccCcCCHHHHhcC
Confidence 55666666666554 344444443 66666666666531 1 12233566666666666666644455544 6666
Q ss_pred CCCCeeeecCCccc-cccccccCCC-CccEEEcCCCCCcccccccccc--cCccceeecCCCcccccCCccCCCCCCCcc
Q 002308 592 VHLRYLNLSDQKIK-KLPETLCELY-NLEKLDISGCSDLRELPKGIGK--LINMKHLLNSGTRSLRYMPVGIGRLTGLRT 667 (938)
Q Consensus 592 ~~L~~L~L~~~~i~-~lp~~i~~l~-~L~~L~l~~~~~l~~lp~~i~~--l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~ 667 (938)
++|++|++++|.+. .+|..+.+++ +|++|++++|.....+|..+.. +++|++|++++|.....+|..++++++|+.
T Consensus 343 ~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~ 422 (768)
T 3rgz_A 343 RGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVS 422 (768)
T ss_dssp TTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGCTTCCE
T ss_pred CCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccccccCHHHhcCCCCCE
Confidence 66666666666665 5666666665 6666666666655555555555 566666666666555566666666666666
Q ss_pred cCeeEecCCCCCCCCcccccccccccccCcceeecCcCCCCChhhhhhhhccCCCcCCceEEEEecCCCCCCCCCccchH
Q 002308 668 LGEFHVSAGGGVDGSKACRLESLKNLEHLQVCCIRRLGDVSDVGEAKLLELDKKKYLSRLRLEFDKKGGGGGRRKNEDDQ 747 (938)
Q Consensus 668 L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~ 747 (938)
|++++|.+.+..+ ..+..+++|+.|++.+|...+..+. .+..+++|+.|++++|.+.+.
T Consensus 423 L~Ls~N~l~~~~p----~~l~~l~~L~~L~L~~n~l~~~~p~-------~~~~l~~L~~L~L~~N~l~~~---------- 481 (768)
T 3rgz_A 423 LHLSFNYLSGTIP----SSLGSLSKLRDLKLWLNMLEGEIPQ-------ELMYVKTLETLILDFNDLTGE---------- 481 (768)
T ss_dssp EECCSSEEESCCC----GGGGGCTTCCEEECCSSCCCSCCCG-------GGGGCTTCCEEECCSSCCCSC----------
T ss_pred EECcCCcccCccc----HHHhcCCCCCEEECCCCcccCcCCH-------HHcCCCCceEEEecCCcccCc----------
Confidence 6666665543222 2355666666666666665544443 455566677777776665531
Q ss_pred HHHhhCCCCCCCCeEEEeeecCCCCCCCchhccCCCCEEEEecCCCCCcCCC-CCCCCccceeecccccCceEeCccccc
Q 002308 748 LLLEALQPPLNLKELEIHYYGGNTVFPSWMASLTNLKSLDLCFCENCEQLPP-LGKLPSLEQLFISYMSSVKRVGDEFLG 826 (938)
Q Consensus 748 ~~~~~l~~~~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~l~~-l~~l~~L~~L~L~~~~~l~~~~~~~~~ 826 (938)
++..+..+++|+.|++++|.+.+.+|.+++.+++|+.|+|++|.+.+.+|. ++.+++|+.|++++|.....+|..++.
T Consensus 482 -~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~ 560 (768)
T 3rgz_A 482 -IPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFK 560 (768)
T ss_dssp -CCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGT
T ss_pred -CCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhc
Confidence 344555666777777777777655677777777777777777766655554 666777777777776644455544332
Q ss_pred CC----------------------------------------------------------------------CCCCCCCC
Q 002308 827 VE----------------------------------------------------------------------SDRHDSSS 836 (938)
Q Consensus 827 ~~----------------------------------------------------------------------~l~~~~~~ 836 (938)
.. .+..++++
T Consensus 561 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs 640 (768)
T 3rgz_A 561 QSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMS 640 (768)
T ss_dssp TTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECC
T ss_pred ccchhhhhccccccccccccccccccccccccccccccccchhhhccccccccccccceecccCchhhhccccccEEECc
Confidence 21 12222233
Q ss_pred CCccc-------ccCCccceeeccccccccccccccccccccccccccccceecccccccccCCCCCCCCCCCcCEEEEe
Q 002308 837 SSSVI-------IAFPKLKSLSIFEMEELEEWDYGITRTGNTFINIMPRLSSLTINYCSKLKALPDHIHQTTTLKELRIG 909 (938)
Q Consensus 837 ~~~~~-------~~~~~L~~L~l~~~~~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~ 909 (938)
.|.+. ..+++|+.|+++++. .....+..++.+++|+.|+|++|+....+|..+..+++|++|+++
T Consensus 641 ~N~l~g~ip~~l~~l~~L~~L~Ls~N~--------l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls 712 (768)
T 3rgz_A 641 YNMLSGYIPKEIGSMPYLFILNLGHND--------ISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLS 712 (768)
T ss_dssp SSCCBSCCCGGGGGCTTCCEEECCSSC--------CCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECC
T ss_pred CCcccccCCHHHhccccCCEEeCcCCc--------cCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECc
Confidence 33221 112233333333321 122334455677788888888776666777777778888888887
Q ss_pred cCcchHH---------------------------HhcCCCCCCCCcccCCCCc
Q 002308 910 ECDLLEE---------------------------RYRKGEGEDWPKTSHIPSI 935 (938)
Q Consensus 910 ~c~~l~~---------------------------~~~~~~~~~~~~i~~i~~~ 935 (938)
+|+..-. .|....+++|++|+|+|++
T Consensus 713 ~N~l~g~iP~~~~~~~~~~~~~~gN~~Lcg~~l~~C~~~~~~~~~~~~~~~~~ 765 (768)
T 3rgz_A 713 NNNLSGPIPEMGQFETFPPAKFLNNPGLCGYPLPRCDPSNADGYAHHQRSHHH 765 (768)
T ss_dssp SSEEEEECCSSSSGGGSCGGGGCSCTEEESTTSCCCCSCC-------------
T ss_pred CCcccccCCCchhhccCCHHHhcCCchhcCCCCcCCCCCccCCCCCCCCcccc
Confidence 7764210 3677899999999999976
No 6
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.96 E-value=8.3e-31 Score=317.13 Aligned_cols=313 Identities=20% Similarity=0.161 Sum_probs=199.4
Q ss_pred ccCcccccc-CCCCeeeecCCccc-cccccccCCCCccEEEcCCCCCccccccc-ccccCccceeecCCCcccccCCccC
Q 002308 583 EIPRNIEKL-VHLRYLNLSDQKIK-KLPETLCELYNLEKLDISGCSDLRELPKG-IGKLINMKHLLNSGTRSLRYMPVGI 659 (938)
Q Consensus 583 ~lp~~~~~l-~~L~~L~L~~~~i~-~lp~~i~~l~~L~~L~l~~~~~l~~lp~~-i~~l~~L~~L~l~~~~~~~~~p~~l 659 (938)
.+|..+..+ ++|++|+|++|.++ .+|..++++++|++|++++|...+.+|.. +..+++|++|++++|.....+|..+
T Consensus 284 ~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l 363 (768)
T 3rgz_A 284 EIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESL 363 (768)
T ss_dssp SCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCTTH
T ss_pred ccCHHHHhhcCcCCEEECcCCcCCCccchHHhcCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCccCccccHHH
Confidence 444444443 55666666666555 45555566666666666665533355544 5555555555555554444455544
Q ss_pred CCCC-CCcccCeeEecCCCCCCC----------------------CcccccccccccccCcceeecCcCCCCChhhhhhh
Q 002308 660 GRLT-GLRTLGEFHVSAGGGVDG----------------------SKACRLESLKNLEHLQVCCIRRLGDVSDVGEAKLL 716 (938)
Q Consensus 660 ~~l~-~L~~L~l~~~~~~~~~~~----------------------~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~ 716 (938)
..++ +|+.|++++|.+.+..+. .....+..+++|+.|++.+|...+..+.
T Consensus 364 ~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~------- 436 (768)
T 3rgz_A 364 TNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPS------- 436 (768)
T ss_dssp HHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCG-------
T ss_pred HhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccccccCHHHhcCCCCCEEECcCCcccCcccH-------
Confidence 4444 455554444433221111 1122356667777777777766554443
Q ss_pred hccCCCcCCceEEEEecCCCCCCCCCccchHHHHhhCCCCCCCCeEEEeeecCCCCCCCchhccCCCCEEEEecCCCCCc
Q 002308 717 ELDKKKYLSRLRLEFDKKGGGGGRRKNEDDQLLLEALQPPLNLKELEIHYYGGNTVFPSWMASLTNLKSLDLCFCENCEQ 796 (938)
Q Consensus 717 ~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~ 796 (938)
.+..+++|+.|+++.|.+.+ .++..+..+++|+.|++++|.+.+.+|.++..+++|+.|+|++|.+.+.
T Consensus 437 ~l~~l~~L~~L~L~~n~l~~-----------~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~ 505 (768)
T 3rgz_A 437 SLGSLSKLRDLKLWLNMLEG-----------EIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGE 505 (768)
T ss_dssp GGGGCTTCCEEECCSSCCCS-----------CCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSC
T ss_pred HHhcCCCCCEEECCCCcccC-----------cCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCc
Confidence 46667788888888877653 1455677788999999999998877888889999999999999988877
Q ss_pred CCC-CCCCCccceeecccccCceEeCcccccCCCCCCCCCCCCcccccCCc-------cceee-----------------
Q 002308 797 LPP-LGKLPSLEQLFISYMSSVKRVGDEFLGVESDRHDSSSSSSVIIAFPK-------LKSLS----------------- 851 (938)
Q Consensus 797 l~~-l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~-------L~~L~----------------- 851 (938)
+|. ++.+++|+.|+|++|.....+|..+.....++.++++.|...+.+|. +..+.
T Consensus 506 ~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 585 (768)
T 3rgz_A 506 IPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKK 585 (768)
T ss_dssp CCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCT
T ss_pred CChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhccccccccccccccccc
Confidence 776 88899999999999986668888888888888888887766543331 00000
Q ss_pred ------------------------------------------ccccccccccccc---cccccccccccccccceecccc
Q 002308 852 ------------------------------------------IFEMEELEEWDYG---ITRTGNTFINIMPRLSSLTINY 886 (938)
Q Consensus 852 ------------------------------------------l~~~~~L~~~~~~---~~~~~~~~~~~l~~L~~L~l~~ 886 (938)
+..++.|+.+..+ .....+..++.+++|+.|+|++
T Consensus 586 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~ 665 (768)
T 3rgz_A 586 ECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGH 665 (768)
T ss_dssp TCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCS
T ss_pred cccccccccccccccchhhhccccccccccccceecccCchhhhccccccEEECcCCcccccCCHHHhccccCCEEeCcC
Confidence 0011222222221 1123344566788888888888
Q ss_pred cccccCCCCCCCCCCCcCEEEEecCcc
Q 002308 887 CSKLKALPDHIHQTTTLKELRIGECDL 913 (938)
Q Consensus 887 c~~l~~lp~~l~~l~~L~~L~l~~c~~ 913 (938)
|.....+|..+.++++|+.|++++|+.
T Consensus 666 N~l~g~ip~~l~~L~~L~~LdLs~N~l 692 (768)
T 3rgz_A 666 NDISGSIPDEVGDLRGLNILDLSSNKL 692 (768)
T ss_dssp SCCCSCCCGGGGGCTTCCEEECCSSCC
T ss_pred CccCCCCChHHhCCCCCCEEECCCCcc
Confidence 766667888888888888888888875
No 7
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.96 E-value=2.5e-30 Score=305.46 Aligned_cols=376 Identities=15% Similarity=0.123 Sum_probs=253.9
Q ss_pred cccceEEEEccCCCc-CcccccccCceeEEeccCCCC-------C-----------------------------------
Q 002308 515 EKVRHLMLIMGKEST-FPISTCRAKRIRSLLIEWPEF-------G----------------------------------- 551 (938)
Q Consensus 515 ~~~r~l~l~~~~~~~-~~~~~~~~~~Lr~L~l~~~~~-------~----------------------------------- 551 (938)
..++.+++.++.+.. +|..+..+++|++|++++|.+ +
T Consensus 81 ~~V~~L~L~~~~l~g~lp~~l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~~~~l~l~l~~~~l~~~~~~~~~~ 160 (636)
T 4eco_A 81 GRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSD 160 (636)
T ss_dssp CCEEEEECTTSCCEEEECGGGGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHHHHHHHTHHHHHHTCCCGGGGSCH
T ss_pred CCEEEEEecCcccCCcCChHHhcCccceEEECcCCccccCCccccccccccCchHHHHHHHHhhHHHhhhccCchhhHHH
Confidence 467788888887764 778888899999999888853 1
Q ss_pred -------------------------------CCCchhhHHHHHhccCCCeeEEecCCCCCCcc-----------------
Q 002308 552 -------------------------------HSSLNGEILEELFRESTSLRALDFPSFYLPLE----------------- 583 (938)
Q Consensus 552 -------------------------------~~~~~~~~~~~~~~~~~~Lr~L~L~~n~~~~~----------------- 583 (938)
.+.+.+ +|. .+.++++|++|+|++|.+.+.
T Consensus 161 ~~~~l~~~~l~~~~~~~~~~~~l~~l~l~~~~n~l~~-ip~-~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ 238 (636)
T 4eco_A 161 LIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITF-VSK-AVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQY 238 (636)
T ss_dssp HHHHHHHHCTTSCCCCCCCCCCCCTTTTTCCSCEEEE-ECG-GGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHH
T ss_pred HHHHHhhcCccccccccccccchhhhhhccccCCCcc-CCH-HHhcccCCCEEECcCCccccccccccccccccchhccc
Confidence 112223 333 478889999999999986664
Q ss_pred cCcccc--ccCCCCeeeecCCccc-cccccccCCCCccEEEcCCCC-Ccc-ccccccccc------CccceeecCCCccc
Q 002308 584 IPRNIE--KLVHLRYLNLSDQKIK-KLPETLCELYNLEKLDISGCS-DLR-ELPKGIGKL------INMKHLLNSGTRSL 652 (938)
Q Consensus 584 lp~~~~--~l~~L~~L~L~~~~i~-~lp~~i~~l~~L~~L~l~~~~-~l~-~lp~~i~~l------~~L~~L~l~~~~~~ 652 (938)
+|..++ ++++|++|+|++|.+. .+|..++++++|++|++++|. ... .+|..++.+ ++|++|++++|...
T Consensus 239 ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~ 318 (636)
T 4eco_A 239 KTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK 318 (636)
T ss_dssp TTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS
T ss_pred CchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC
Confidence 888888 8999999999998865 788889999999999999987 555 688888776 88999999988665
Q ss_pred ccCCc--cCCCCCCCcccCeeEecCCCCCCCCcccccccccccccCcceeecCcCCCCChhhhhhhhccCCCc-CCceEE
Q 002308 653 RYMPV--GIGRLTGLRTLGEFHVSAGGGVDGSKACRLESLKNLEHLQVCCIRRLGDVSDVGEAKLLELDKKKY-LSRLRL 729 (938)
Q Consensus 653 ~~~p~--~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~~~~-L~~L~L 729 (938)
.+|. .++++++|+.|++++|.+.+.++ .+..+++|+.|++.+|.+. .++. .+..+++ |+.|++
T Consensus 319 -~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-----~~~~l~~L~~L~L~~N~l~-~lp~-------~l~~l~~~L~~L~L 384 (636)
T 4eco_A 319 -TFPVETSLQKMKKLGMLECLYNQLEGKLP-----AFGSEIKLASLNLAYNQIT-EIPA-------NFCGFTEQVENLSF 384 (636)
T ss_dssp -SCCCHHHHTTCTTCCEEECCSCCCEEECC-----CCEEEEEESEEECCSSEEE-ECCT-------TSEEECTTCCEEEC
T ss_pred -ccCchhhhccCCCCCEEeCcCCcCccchh-----hhCCCCCCCEEECCCCccc-cccH-------hhhhhcccCcEEEc
Confidence 7888 78888999999888887763332 3667777777777777655 2222 3455555 666666
Q ss_pred EEecCCCCCCCC--------------CccchHHHHhhCC-------CCCCCCeEEEeeecCCCCCCCchh-ccCCCCEEE
Q 002308 730 EFDKKGGGGGRR--------------KNEDDQLLLEALQ-------PPLNLKELEIHYYGGNTVFPSWMA-SLTNLKSLD 787 (938)
Q Consensus 730 ~~~~~~~~~~~~--------------~~~~~~~~~~~l~-------~~~~L~~L~l~~~~~~~~~p~~~~-~l~~L~~L~ 787 (938)
++|.+...+... .+......+..+. .+++|+.|++++|.+.. +|..+. .+++|+.|+
T Consensus 385 s~N~l~~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~-lp~~~~~~l~~L~~L~ 463 (636)
T 4eco_A 385 AHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISK-FPKELFSTGSPLSSIN 463 (636)
T ss_dssp CSSCCSSCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCCS-CCTHHHHTTCCCSEEE
T ss_pred cCCcCcccchhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccCc-CCHHHHccCCCCCEEE
Confidence 666554311100 0000011223333 45577777777777776 665443 577788888
Q ss_pred EecCCCCCcCCC--CC-------CCCccceeecccccCceEeCcccc--cCCCCCCCCCCCCcccc------cCCcccee
Q 002308 788 LCFCENCEQLPP--LG-------KLPSLEQLFISYMSSVKRVGDEFL--GVESDRHDSSSSSSVII------AFPKLKSL 850 (938)
Q Consensus 788 L~~~~~~~~l~~--l~-------~l~~L~~L~L~~~~~l~~~~~~~~--~~~~l~~~~~~~~~~~~------~~~~L~~L 850 (938)
|++|.+. .+|. +. ++++|+.|+|++|. ++.+|..+. ....+..++++.|.+.. .+++|+.|
T Consensus 464 Ls~N~l~-~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~-l~~lp~~~~~~~l~~L~~L~Ls~N~l~~ip~~~~~l~~L~~L 541 (636)
T 4eco_A 464 LMGNMLT-EIPKNSLKDENENFKNTYLLTSIDLRFNK-LTKLSDDFRATTLPYLVGIDLSYNSFSKFPTQPLNSSTLKGF 541 (636)
T ss_dssp CCSSCCS-BCCSSSSEETTEECTTGGGCCEEECCSSC-CCBCCGGGSTTTCTTCCEEECCSSCCSSCCCGGGGCSSCCEE
T ss_pred CCCCCCC-CcCHHHhccccccccccCCccEEECcCCc-CCccChhhhhccCCCcCEEECCCCCCCCcChhhhcCCCCCEE
Confidence 8777665 4443 22 23378888888776 557777665 66677777777666432 34567777
Q ss_pred eccccccccccccccccccccccccccccceecccccccccCCCCCCCCCCCcCEEEEecCcch
Q 002308 851 SIFEMEELEEWDYGITRTGNTFINIMPRLSSLTINYCSKLKALPDHIHQTTTLKELRIGECDLL 914 (938)
Q Consensus 851 ~l~~~~~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~~l 914 (938)
+++++..+.. +......+..+..+++|+.|+|++|. ++.+|..+. ++|++|++++|+..
T Consensus 542 ~Ls~N~~ls~--N~l~~~~p~~l~~l~~L~~L~Ls~N~-l~~ip~~~~--~~L~~L~Ls~N~l~ 600 (636)
T 4eco_A 542 GIRNQRDAQG--NRTLREWPEGITLCPSLTQLQIGSND-IRKVNEKIT--PNISVLDIKDNPNI 600 (636)
T ss_dssp ECCSCBCTTC--CBCCCCCCTTGGGCSSCCEEECCSSC-CCBCCSCCC--TTCCEEECCSCTTC
T ss_pred ECCCCccccc--CcccccChHHHhcCCCCCEEECCCCc-CCccCHhHh--CcCCEEECcCCCCc
Confidence 7654331111 01112233445678899999999875 488888765 78999999998753
No 8
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.96 E-value=3.6e-29 Score=296.33 Aligned_cols=383 Identities=14% Similarity=0.035 Sum_probs=259.6
Q ss_pred EeeCCcccccCCCCcccccceEEEEccCCCcC-cccccccCceeEEeccCCCCCCCCchhhHHHHHhccCCCeeEEecCC
Q 002308 499 LEVNGSEELNVPNSLDEKVRHLMLIMGKESTF-PISTCRAKRIRSLLIEWPEFGHSSLNGEILEELFRESTSLRALDFPS 577 (938)
Q Consensus 499 ~~~~~~~~~~~~~~~~~~~r~l~l~~~~~~~~-~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~ 577 (938)
..+.+.....+|...+..++++++++|.+... +..+..+++|++|++++|.+ ..+.+..|.++++|++|+|++
T Consensus 17 ~~c~~~~l~~iP~~l~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i------~~~~~~~~~~l~~L~~L~Ls~ 90 (606)
T 3t6q_A 17 YNCENLGLNEIPGTLPNSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQI------YWIHEDTFQSQHRLDTLVLTA 90 (606)
T ss_dssp EECTTSCCSSCCTTSCTTCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCC------CEECTTTTTTCTTCCEEECTT
T ss_pred EECCCCCcccCcCCCCCcCcEEEccCCccCcCChhHhccCccceEEECCCCcc------ceeChhhccCccccCeeeCCC
Confidence 44555555567777889999999999999885 66889999999999999875 234455689999999999999
Q ss_pred CCCCcccCccccccCCCCeeeecCCccccc-cccccCCCCccEEEcCCCCCcccccccccccCccceeecCCCcccccCC
Q 002308 578 FYLPLEIPRNIEKLVHLRYLNLSDQKIKKL-PETLCELYNLEKLDISGCSDLRELPKGIGKLINMKHLLNSGTRSLRYMP 656 (938)
Q Consensus 578 n~~~~~lp~~~~~l~~L~~L~L~~~~i~~l-p~~i~~l~~L~~L~l~~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~p 656 (938)
|.+....|..|+++++|++|++++|.++.+ |..++++++|++|++++|.....-+..+..+++|++|++++|......|
T Consensus 91 n~l~~~~~~~~~~l~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~ 170 (606)
T 3t6q_A 91 NPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSK 170 (606)
T ss_dssp CCCSEECTTTTSSCTTCCEEECTTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEECH
T ss_pred CcccccChhhhcccccccEeeccccCcccCCcchhccCCcccEEECCCCcccccCcccccCCcccCEEEcccCcccccCh
Confidence 997777788999999999999999999987 5779999999999999999544222345559999999999997776667
Q ss_pred ccCCCCCCCc--ccCeeEecCCCCCCCCccc---------------------------------------------cccc
Q 002308 657 VGIGRLTGLR--TLGEFHVSAGGGVDGSKAC---------------------------------------------RLES 689 (938)
Q Consensus 657 ~~l~~l~~L~--~L~l~~~~~~~~~~~~~~~---------------------------------------------~l~~ 689 (938)
..++.+++|+ .|++.+|.+....+..... .+..
T Consensus 171 ~~~~~l~~L~~l~L~l~~n~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~ 250 (606)
T 3t6q_A 171 EDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEG 250 (606)
T ss_dssp HHHHTTTTCCSEEEECTTCCCCEECTTTTTTCEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGG
T ss_pred hhhhhhcccceeEEecCCCccCccChhHhhhccccccccCCchhHHHHhhhccccchhheechhhccccccccChhHhch
Confidence 7788899998 7777777665433222100 0000
Q ss_pred cc--ccccCcceeecCcCCCCChhhhhhhhccCCCcCCceEEEEecCCCCCCCCCccchHHHHhhCCCCCCCCeEEEeee
Q 002308 690 LK--NLEHLQVCCIRRLGDVSDVGEAKLLELDKKKYLSRLRLEFDKKGGGGGRRKNEDDQLLLEALQPPLNLKELEIHYY 767 (938)
Q Consensus 690 l~--~L~~L~l~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~ 767 (938)
+. +|+.|++.+|......+. .+..+++|+.|++++|.+.. ++..+..+++|++|++++|
T Consensus 251 l~~~~L~~L~l~~n~l~~~~~~-------~~~~l~~L~~L~l~~n~l~~------------lp~~l~~l~~L~~L~l~~n 311 (606)
T 3t6q_A 251 LCEMSVESINLQKHYFFNISSN-------TFHCFSGLQELDLTATHLSE------------LPSGLVGLSTLKKLVLSAN 311 (606)
T ss_dssp GGGSEEEEEECTTCCCSSCCTT-------TTTTCTTCSEEECTTSCCSC------------CCSSCCSCTTCCEEECTTC
T ss_pred hhcCceeEEEeecCccCccCHH-------HhccccCCCEEeccCCccCC------------CChhhcccccCCEEECccC
Confidence 10 334444444433332222 35667778888888777654 4555666777777777777
Q ss_pred cCCCCCCCchhccCCCCEEEEecCCCCCcCCC--CCCCCccceeecccccCceEe--CcccccCCCCCCCCCCCCcc---
Q 002308 768 GGNTVFPSWMASLTNLKSLDLCFCENCEQLPP--LGKLPSLEQLFISYMSSVKRV--GDEFLGVESDRHDSSSSSSV--- 840 (938)
Q Consensus 768 ~~~~~~p~~~~~l~~L~~L~L~~~~~~~~l~~--l~~l~~L~~L~L~~~~~l~~~--~~~~~~~~~l~~~~~~~~~~--- 840 (938)
.+....|..+..+++|+.|++++|.+...+|. ++.+++|+.|++++|...... +..+.....++.++++.|..
T Consensus 312 ~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~ 391 (606)
T 3t6q_A 312 KFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSL 391 (606)
T ss_dssp CCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEE
T ss_pred CcCcCchhhhhccCcCCEEECCCCCcccccchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcC
Confidence 77764456677777777777777766655543 677777777777777633322 44455556666666665543
Q ss_pred ----cccCCccceeeccccccccccccccccccccccccccccceecccccccccCCCCCCCCCCCcCEEEEecCcc
Q 002308 841 ----IIAFPKLKSLSIFEMEELEEWDYGITRTGNTFINIMPRLSSLTINYCSKLKALPDHIHQTTTLKELRIGECDL 913 (938)
Q Consensus 841 ----~~~~~~L~~L~l~~~~~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~~ 913 (938)
...+++|+.|++.++. +.... ....+..+++|+.|++++|......|..+..+++|++|++++|+.
T Consensus 392 ~~~~~~~l~~L~~L~l~~n~-l~~~~------~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l 461 (606)
T 3t6q_A 392 KTEAFKECPQLELLDLAFTR-LKVKD------AQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHF 461 (606)
T ss_dssp CTTTTTTCTTCSEEECTTCC-EECCT------TCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBC
T ss_pred CHHHhcCCccCCeEECCCCc-CCCcc------cchhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCC
Confidence 1235566666666543 11110 111234566666666666544344455556666666666666654
No 9
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.96 E-value=8.7e-29 Score=293.00 Aligned_cols=386 Identities=18% Similarity=0.125 Sum_probs=261.0
Q ss_pred EEeeCCcccccCCCCcccccceEEEEccCCCcCc-ccccccCceeEEeccCCCCCCCCchhhHHHHHhccCCCeeEEecC
Q 002308 498 SLEVNGSEELNVPNSLDEKVRHLMLIMGKESTFP-ISTCRAKRIRSLLIEWPEFGHSSLNGEILEELFRESTSLRALDFP 576 (938)
Q Consensus 498 ~~~~~~~~~~~~~~~~~~~~r~l~l~~~~~~~~~-~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~ 576 (938)
...+.+.....+|...+..++++++++|.+...+ ..+.++++|++|++++|.+ ..+++..|.++++|++|+|+
T Consensus 15 ~~~c~~~~l~~ip~~~~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l------~~i~~~~~~~l~~L~~L~Ls 88 (606)
T 3vq2_A 15 TYQCMDQKLSKVPDDIPSSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEI------ETIEDKAWHGLHHLSNLILT 88 (606)
T ss_dssp EEECTTSCCSSCCTTSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCC------CEECTTTTTTCTTCCEEECT
T ss_pred ceEccCCCcccCCCCCCCCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCcc------cccCHHHhhchhhcCEeECC
Confidence 3455555555677778899999999999998755 4888999999999999876 33445568999999999999
Q ss_pred CCCCCcccCccccccCCCCeeeecCCcccccc-ccccCCCCccEEEcCCCCCcc-cccccccccCccceeecCCCccccc
Q 002308 577 SFYLPLEIPRNIEKLVHLRYLNLSDQKIKKLP-ETLCELYNLEKLDISGCSDLR-ELPKGIGKLINMKHLLNSGTRSLRY 654 (938)
Q Consensus 577 ~n~~~~~lp~~~~~l~~L~~L~L~~~~i~~lp-~~i~~l~~L~~L~l~~~~~l~-~lp~~i~~l~~L~~L~l~~~~~~~~ 654 (938)
+|.+....|..|+++++|++|+|++|.+..+| ..++++++|++|++++|.... .+|..+.++++|++|++++|.....
T Consensus 89 ~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~ 168 (606)
T 3vq2_A 89 GNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTI 168 (606)
T ss_dssp TCCCCCCCTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEE
T ss_pred CCcccccChhhcCCcccCCEEEccCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcceec
Confidence 99966666999999999999999999999877 679999999999999998554 5799999999999999999977766
Q ss_pred CCccCCCCCCCc----ccCeeEecCCCCCCCCcccccccccccccCcceeecCcC-------------------------
Q 002308 655 MPVGIGRLTGLR----TLGEFHVSAGGGVDGSKACRLESLKNLEHLQVCCIRRLG------------------------- 705 (938)
Q Consensus 655 ~p~~l~~l~~L~----~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~------------------------- 705 (938)
.|..++.+++|+ +|++++|.+....+. .....+|+.|++.+|....
T Consensus 169 ~~~~~~~l~~L~~~l~~L~l~~n~l~~~~~~-----~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~ 243 (606)
T 3vq2_A 169 TVNDLQFLRENPQVNLSLDMSLNPIDFIQDQ-----AFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKD 243 (606)
T ss_dssp CTTTTHHHHHCTTCCCEEECTTCCCCEECTT-----TTTTCEEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTT
T ss_pred ChhhhhhhhccccccceeeccCCCcceeCcc-----cccCceeeeeeccCCccchhHHHHHhcccccccccccccccccc
Confidence 676677666655 677777766542221 1122256666665554320
Q ss_pred --------------------------CCCChhhhhhhhccCCCcCCceEEEEecCCCCCCCCCccchHHHHhhCCCCCCC
Q 002308 706 --------------------------DVSDVGEAKLLELDKKKYLSRLRLEFDKKGGGGGRRKNEDDQLLLEALQPPLNL 759 (938)
Q Consensus 706 --------------------------~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L 759 (938)
...... .....+..+++|+.|+++++.+.. ++ .+..+++|
T Consensus 244 ~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~-~~~~~~~~l~~L~~L~l~~~~~~~------------l~-~l~~~~~L 309 (606)
T 3vq2_A 244 ERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFS-DDIVKFHCLANVSAMSLAGVSIKY------------LE-DVPKHFKW 309 (606)
T ss_dssp SCCCSCCCGGGGTTGGGSEEEEEEECCCTTCC-GGGGSCGGGTTCSEEEEESCCCCC------------CC-CCCTTCCC
T ss_pred CCcccccChHHhhhhhhccHhheecccccccc-ccccccccCCCCCEEEecCccchh------------hh-hccccccC
Confidence 000000 011125566788888888887754 22 66677888
Q ss_pred CeEEEeeecCCCCCCCchhccCCCCEEEEecCCCCCcCCCCCCCCccceeecccccCceEe---CcccccCCCCCCCCCC
Q 002308 760 KELEIHYYGGNTVFPSWMASLTNLKSLDLCFCENCEQLPPLGKLPSLEQLFISYMSSVKRV---GDEFLGVESDRHDSSS 836 (938)
Q Consensus 760 ~~L~l~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~l~~l~~l~~L~~L~L~~~~~l~~~---~~~~~~~~~l~~~~~~ 836 (938)
++|++++|.+.. +|.+ .+++|+.|++++|...... .++.+++|+.|++++|. +..+ +..+.....++.++++
T Consensus 310 ~~L~l~~n~l~~-lp~~--~l~~L~~L~l~~n~~~~~~-~~~~l~~L~~L~ls~n~-l~~~~~~~~~~~~~~~L~~L~L~ 384 (606)
T 3vq2_A 310 QSLSIIRCQLKQ-FPTL--DLPFLKSLTLTMNKGSISF-KKVALPSLSYLDLSRNA-LSFSGCCSYSDLGTNSLRHLDLS 384 (606)
T ss_dssp SEEEEESCCCSS-CCCC--CCSSCCEEEEESCSSCEEC-CCCCCTTCCEEECCSSC-EEEEEECCHHHHCCSCCCEEECC
T ss_pred CEEEcccccCcc-cccC--CCCccceeeccCCcCccch-hhccCCCCCEEECcCCc-cCCCcchhhhhccCCcccEeECC
Confidence 888888888854 7754 7888888888888544433 46677777777777776 4433 4445555556666665
Q ss_pred CCcc------cccCCccceeeccccc--------------ccccccccc---ccccccccccccccceeccccccccc-C
Q 002308 837 SSSV------IIAFPKLKSLSIFEME--------------ELEEWDYGI---TRTGNTFINIMPRLSSLTINYCSKLK-A 892 (938)
Q Consensus 837 ~~~~------~~~~~~L~~L~l~~~~--------------~L~~~~~~~---~~~~~~~~~~l~~L~~L~l~~c~~l~-~ 892 (938)
.|.. ...+++|+.|++.++. +|+.+..+. ....+..+..+++|+.|++++|.... .
T Consensus 385 ~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 464 (606)
T 3vq2_A 385 FNGAIIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNT 464 (606)
T ss_dssp SCSEEEECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGE
T ss_pred CCccccchhhccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcc
Confidence 5542 2335566666665542 111111110 11122334456666666666654333 2
Q ss_pred CCCCCCCCCCcCEEEEecCcc
Q 002308 893 LPDHIHQTTTLKELRIGECDL 913 (938)
Q Consensus 893 lp~~l~~l~~L~~L~l~~c~~ 913 (938)
+|..+..+++|++|++++|+.
T Consensus 465 ~~~~~~~l~~L~~L~Ls~n~l 485 (606)
T 3vq2_A 465 LSNVFANTTNLTFLDLSKCQL 485 (606)
T ss_dssp ECSCCTTCTTCCEEECTTSCC
T ss_pred hHHhhccCCCCCEEECCCCcC
Confidence 565666666666666666654
No 10
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.96 E-value=3e-28 Score=297.88 Aligned_cols=393 Identities=19% Similarity=0.111 Sum_probs=254.9
Q ss_pred EEeeCCcccccCCCCcccccceEEEEccCCCc-CcccccccCceeEEeccCCCCCCCCchhhHHHHHhccCCCeeEEecC
Q 002308 498 SLEVNGSEELNVPNSLDEKVRHLMLIMGKEST-FPISTCRAKRIRSLLIEWPEFGHSSLNGEILEELFRESTSLRALDFP 576 (938)
Q Consensus 498 ~~~~~~~~~~~~~~~~~~~~r~l~l~~~~~~~-~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~ 576 (938)
..++.......+|. .+..+++|++++|.+.. .+..+..+++|+.|++++|.. ...+.+..|.++++|++|+|+
T Consensus 8 ~~dcs~~~L~~vP~-lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~-----~~~i~~~~f~~L~~L~~L~Ls 81 (844)
T 3j0a_A 8 IAFYRFCNLTQVPQ-VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYT-----PLTIDKEAFRNLPNLRILDLG 81 (844)
T ss_dssp EEEESCCCSSCCCS-SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCC-----CCEECTTTTSSCTTCCEEECT
T ss_pred EEEccCCCCCCCCC-CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCC-----ccccCHHHhcCCCCCCEEECC
Confidence 44555555556666 77999999999999987 467899999999999998843 234445668999999999999
Q ss_pred CCCCCcccCccccccCCCCeeeecCCcccc-cccc--ccCCCCccEEEcCCCCCccccc-ccccccCccceeecCCCccc
Q 002308 577 SFYLPLEIPRNIEKLVHLRYLNLSDQKIKK-LPET--LCELYNLEKLDISGCSDLRELP-KGIGKLINMKHLLNSGTRSL 652 (938)
Q Consensus 577 ~n~~~~~lp~~~~~l~~L~~L~L~~~~i~~-lp~~--i~~l~~L~~L~l~~~~~l~~lp-~~i~~l~~L~~L~l~~~~~~ 652 (938)
+|.+....|..|+++++|++|+|++|.+.. +|.. +.++++|++|++++|......| ..+.++++|++|++++|...
T Consensus 82 ~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~ 161 (844)
T 3j0a_A 82 SSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIF 161 (844)
T ss_dssp TCCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCC
T ss_pred CCcCcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCC
Confidence 999777779999999999999999999984 5654 8999999999999999555433 57899999999999999777
Q ss_pred ccCCccCCCC--CCCcccCeeEecCCCCCCCCccccccccc------ccccCcceeecCcCCCCChhh------------
Q 002308 653 RYMPVGIGRL--TGLRTLGEFHVSAGGGVDGSKACRLESLK------NLEHLQVCCIRRLGDVSDVGE------------ 712 (938)
Q Consensus 653 ~~~p~~l~~l--~~L~~L~l~~~~~~~~~~~~~~~~l~~l~------~L~~L~l~~~~~~~~~~~~~~------------ 712 (938)
...|..++.+ ++|+.|++..|.+....+.. +..+. .|+.|++++|......+....
T Consensus 162 ~~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~----~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~ 237 (844)
T 3j0a_A 162 LVCEHELEPLQGKTLSFFSLAANSLYSRVSVD----WGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLI 237 (844)
T ss_dssp CCCSGGGHHHHHCSSCCCEECCSBSCCCCCCC----CCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEE
T ss_pred eeCHHHcccccCCccceEECCCCccccccccc----hhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCccccccee
Confidence 7777777776 78999999888776643322 22222 377777776643322111000
Q ss_pred -------------------------------------------hhhhhccCCCcCCceEEEEecCCCCCCCCCccchHHH
Q 002308 713 -------------------------------------------AKLLELDKKKYLSRLRLEFDKKGGGGGRRKNEDDQLL 749 (938)
Q Consensus 713 -------------------------------------------~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~ 749 (938)
.....+..+++|+.|+|++|.+.. ..
T Consensus 238 l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~-----------~~ 306 (844)
T 3j0a_A 238 LAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINK-----------IA 306 (844)
T ss_dssp CCSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCE-----------EC
T ss_pred cccccccccccccccCCCChhhhhccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCC-----------CC
Confidence 001123344555555555555432 11
Q ss_pred HhhCCCCCCCCeEEEeeecCCCCCCCchhccCCCCEEEEecCCCCCcCCC-CCCCCccceeecccccCceEeCcc-----
Q 002308 750 LEALQPPLNLKELEIHYYGGNTVFPSWMASLTNLKSLDLCFCENCEQLPP-LGKLPSLEQLFISYMSSVKRVGDE----- 823 (938)
Q Consensus 750 ~~~l~~~~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~l~~-l~~l~~L~~L~L~~~~~l~~~~~~----- 823 (938)
+..+..+++|+.|++++|.+....|..+..+++|+.|+|++|.+....+. +..+++|+.|+|++|. ++.++..
T Consensus 307 ~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~-l~~i~~~~~L~~ 385 (844)
T 3j0a_A 307 DEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNA-LTTIHFIPSIPD 385 (844)
T ss_dssp TTTTTTCSSCCEEEEESCCCSCCCSCSCSSCTTCCEEECCSCCCCCCCSSCSCSCCCCCEEEEETCC-SCCCSSCCSCSE
T ss_pred hHHhcCCCCCCEEECCCCCCCccCHHHhcCCCCCCEEECCCCCCCccChhhhcCCCCCCEEECCCCC-CCcccCCCCcch
Confidence 23455666777777777766664466666677777777777755444333 6667777777777665 3322210
Q ss_pred -------cc----cCCCCCCCCCCCCccc--------ccCCccceeeccccc--------------cccccccccc----
Q 002308 824 -------FL----GVESDRHDSSSSSSVI--------IAFPKLKSLSIFEME--------------ELEEWDYGIT---- 866 (938)
Q Consensus 824 -------~~----~~~~l~~~~~~~~~~~--------~~~~~L~~L~l~~~~--------------~L~~~~~~~~---- 866 (938)
+. ....+..++++.|.+. ..+|+|+.|+++++. +|+.+..+.+
T Consensus 386 L~l~~N~l~~l~~~~~~l~~L~ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~ 465 (844)
T 3j0a_A 386 IFLSGNKLVTLPKINLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQL 465 (844)
T ss_dssp EEEESCCCCCCCCCCTTCCEEECCSCCCCSSTTHHHHTTCTTCCEEEEESCCCCCCCSSSSSCSCTTCCBCEEESCCCSS
T ss_pred hccCCCCcccccccccccceeecccCccccCchhhhhhcCCccceeeCCCCcccccccccccccCCccccccCCCCcccc
Confidence 00 0001112222222221 145666666665432 1111111111
Q ss_pred ----cccccccccccccceecccccccccCCC-CCCCCCCCcCEEEEecCcc
Q 002308 867 ----RTGNTFINIMPRLSSLTINYCSKLKALP-DHIHQTTTLKELRIGECDL 913 (938)
Q Consensus 867 ----~~~~~~~~~l~~L~~L~l~~c~~l~~lp-~~l~~l~~L~~L~l~~c~~ 913 (938)
...+..+..+++|+.|+|++|. ++.+| ..+..+++|++|++++|..
T Consensus 466 ~~~~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~Ls~N~l 516 (844)
T 3j0a_A 466 AWETELCWDVFEGLSHLQVLYLNHNY-LNSLPPGVFSHLTALRGLSLNSNRL 516 (844)
T ss_dssp SCCSCCCSSCSSCBCCEECCCCCHHH-HTTCCTTSSSSCCSCSEEEEESCCC
T ss_pred ccccccchhhhcCcccccEEECCCCc-ccccChhHccchhhhheeECCCCCC
Confidence 1122345677888888888864 44544 4467788888888888865
No 11
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.96 E-value=6.5e-29 Score=297.25 Aligned_cols=348 Identities=14% Similarity=0.144 Sum_probs=272.4
Q ss_pred ccccceEEEEccCCCc------------------Cccccc--ccCceeEEeccCCCCCCCCchhhHHHHHhccCCCeeEE
Q 002308 514 DEKVRHLMLIMGKEST------------------FPISTC--RAKRIRSLLIEWPEFGHSSLNGEILEELFRESTSLRAL 573 (938)
Q Consensus 514 ~~~~r~l~l~~~~~~~------------------~~~~~~--~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~Lr~L 573 (938)
..+++.|++++|.+.. +|..+. .+++|+.|.+++|.+. +.+| ..|.++++|++|
T Consensus 447 L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~-----~~iP-~~l~~L~~L~~L 520 (876)
T 4ecn_A 447 LTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNM-----TQLP-DFLYDLPELQSL 520 (876)
T ss_dssp CTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTC-----CSCC-GGGGGCSSCCEE
T ss_pred CCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCC-----ccCh-HHHhCCCCCCEE
Confidence 3679999999999987 888877 9999999999988752 2333 458899999999
Q ss_pred ecCCCC-CCc-ccCccccccC-------CCCeeeecCCccccccc--cccCCCCccEEEcCCCCCcccccccccccCccc
Q 002308 574 DFPSFY-LPL-EIPRNIEKLV-------HLRYLNLSDQKIKKLPE--TLCELYNLEKLDISGCSDLRELPKGIGKLINMK 642 (938)
Q Consensus 574 ~L~~n~-~~~-~lp~~~~~l~-------~L~~L~L~~~~i~~lp~--~i~~l~~L~~L~l~~~~~l~~lp~~i~~l~~L~ 642 (938)
+|++|. +.+ .+|..++.+. +|++|+|++|.++.+|. .++++++|++|++++|. +..+| .+..+++|+
T Consensus 521 ~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~~ip~~~~l~~L~~L~~L~Ls~N~-l~~lp-~~~~L~~L~ 598 (876)
T 4ecn_A 521 NIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNK-VRHLE-AFGTNVKLT 598 (876)
T ss_dssp ECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCCBCCCHHHHTTCTTCCEEECTTSC-CCBCC-CCCTTSEES
T ss_pred ECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCCccCChhhhhcCCCCCEEECCCCC-cccch-hhcCCCcce
Confidence 999998 676 7888888776 99999999999999999 99999999999999999 45899 899999999
Q ss_pred eeecCCCcccccCCccCCCCCC-CcccCeeEecCCCCCCCCcccccccc--cccccCcceeecCcCCCCChhhhhhhhcc
Q 002308 643 HLLNSGTRSLRYMPVGIGRLTG-LRTLGEFHVSAGGGVDGSKACRLESL--KNLEHLQVCCIRRLGDVSDVGEAKLLELD 719 (938)
Q Consensus 643 ~L~l~~~~~~~~~p~~l~~l~~-L~~L~l~~~~~~~~~~~~~~~~l~~l--~~L~~L~l~~~~~~~~~~~~~~~~~~~l~ 719 (938)
+|++++|.+. .+|..+..+++ |+.|++++|.+.. ++ ..+..+ ++|+.|++++|.+.+.++.... .....
T Consensus 599 ~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~~-lp----~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~--~l~~~ 670 (876)
T 4ecn_A 599 DLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLKY-IP----NIFNAKSVYVMGSVDFSYNKIGSEGRNISC--SMDDY 670 (876)
T ss_dssp EEECCSSCCS-CCCTTSCEECTTCCEEECCSSCCCS-CC----SCCCTTCSSCEEEEECCSSCTTTTSSSCSS--CTTTC
T ss_pred EEECcCCccc-cchHHHhhccccCCEEECcCCCCCc-Cc----hhhhccccCCCCEEECcCCcCCCccccchh--hhccc
Confidence 9999999766 89999999999 9999999998773 33 234444 3499999999987765443110 00112
Q ss_pred CCCcCCceEEEEecCCCCCCCCCccchHHHHhh-CCCCCCCCeEEEeeecCCCCCCCchhc--------cCCCCEEEEec
Q 002308 720 KKKYLSRLRLEFDKKGGGGGRRKNEDDQLLLEA-LQPPLNLKELEIHYYGGNTVFPSWMAS--------LTNLKSLDLCF 790 (938)
Q Consensus 720 ~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~-l~~~~~L~~L~l~~~~~~~~~p~~~~~--------l~~L~~L~L~~ 790 (938)
.+.+|+.|+|++|.+.. ++.. +..+++|+.|+|++|.+.. +|.++.. +++|+.|+|++
T Consensus 671 ~~~~L~~L~Ls~N~L~~------------lp~~~~~~l~~L~~L~Ls~N~L~~-ip~~~~~~~~~~l~nl~~L~~L~Ls~ 737 (876)
T 4ecn_A 671 KGINASTVTLSYNEIQK------------FPTELFATGSPISTIILSNNLMTS-IPENSLKPKDGNYKNTYLLTTIDLRF 737 (876)
T ss_dssp CCCCEEEEECCSSCCCS------------CCHHHHHTTCCCSEEECCSCCCSC-CCTTSSSCTTSCCTTGGGCCEEECCS
T ss_pred cCCCcCEEEccCCcCCc------------cCHHHHccCCCCCEEECCCCcCCc-cChHHhccccccccccCCccEEECCC
Confidence 34589999999998865 2332 3367899999999999986 7876543 33899999999
Q ss_pred CCCCCcCCC-CC--CCCccceeecccccCceEeCcccccCCCCCCCCCCCCcccccCCccceeecccccccccccccccc
Q 002308 791 CENCEQLPP-LG--KLPSLEQLFISYMSSVKRVGDEFLGVESDRHDSSSSSSVIIAFPKLKSLSIFEMEELEEWDYGITR 867 (938)
Q Consensus 791 ~~~~~~l~~-l~--~l~~L~~L~L~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~~~~~~~~ 867 (938)
|.+. .+|. +. .+++|+.|+|++|. +..+|..+. .+++|+.|++++++.+..- ....
T Consensus 738 N~L~-~lp~~l~~~~l~~L~~L~Ls~N~-L~~lp~~l~-----------------~L~~L~~L~Ls~N~~ls~N--~l~~ 796 (876)
T 4ecn_A 738 NKLT-SLSDDFRATTLPYLSNMDVSYNC-FSSFPTQPL-----------------NSSQLKAFGIRHQRDAEGN--RILR 796 (876)
T ss_dssp SCCC-CCCGGGSTTTCTTCCEEECCSSC-CSSCCCGGG-----------------GCTTCCEEECCCCBCTTCC--BCCC
T ss_pred CCCc-cchHHhhhccCCCcCEEEeCCCC-CCccchhhh-----------------cCCCCCEEECCCCCCcccc--cccc
Confidence 9877 5555 65 99999999999997 444665443 6788999999875422111 1122
Q ss_pred ccccccccccccceecccccccccCCCCCCCCCCCcCEEEEecCcch
Q 002308 868 TGNTFINIMPRLSSLTINYCSKLKALPDHIHQTTTLKELRIGECDLL 914 (938)
Q Consensus 868 ~~~~~~~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~~l 914 (938)
..+..+..+++|+.|+|++|.. ..+|..+. ++|+.|+|++|+..
T Consensus 797 ~ip~~l~~L~~L~~L~Ls~N~L-~~Ip~~l~--~~L~~LdLs~N~l~ 840 (876)
T 4ecn_A 797 QWPTGITTCPSLIQLQIGSNDI-RKVDEKLT--PQLYILDIADNPNI 840 (876)
T ss_dssp CCCTTGGGCSSCCEEECCSSCC-CBCCSCCC--SSSCEEECCSCTTC
T ss_pred cChHHHhcCCCCCEEECCCCCC-CccCHhhc--CCCCEEECCCCCCC
Confidence 3344566899999999999765 89998865 69999999999863
No 12
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.95 E-value=5.5e-29 Score=293.92 Aligned_cols=362 Identities=14% Similarity=0.117 Sum_probs=233.7
Q ss_pred cccceEEEEccCCCc------------------Cccccc--ccCceeEEeccCCCCCCCCchhhHHHHHhccCCCeeEEe
Q 002308 515 EKVRHLMLIMGKEST------------------FPISTC--RAKRIRSLLIEWPEFGHSSLNGEILEELFRESTSLRALD 574 (938)
Q Consensus 515 ~~~r~l~l~~~~~~~------------------~~~~~~--~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~ 574 (938)
.+++.+++++|.+.. +|..+. .+++|+.|.+++|.+. +.+ +..+.++++|++|+
T Consensus 206 ~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~-----~~~-p~~l~~l~~L~~L~ 279 (636)
T 4eco_A 206 TKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNL-----TKL-PTFLKALPEMQLIN 279 (636)
T ss_dssp TTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTC-----SSC-CTTTTTCSSCCEEE
T ss_pred cCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCC-----ccC-hHHHhcCCCCCEEE
Confidence 567788888887776 777777 7888888887777642 222 23367777888888
Q ss_pred cCCCC-CCc-ccCcccccc------CCCCeeeecCCccccccc--cccCCCCccEEEcCCCCCcccccccccccCcccee
Q 002308 575 FPSFY-LPL-EIPRNIEKL------VHLRYLNLSDQKIKKLPE--TLCELYNLEKLDISGCSDLRELPKGIGKLINMKHL 644 (938)
Q Consensus 575 L~~n~-~~~-~lp~~~~~l------~~L~~L~L~~~~i~~lp~--~i~~l~~L~~L~l~~~~~l~~lp~~i~~l~~L~~L 644 (938)
|++|. +.+ .+|..++.+ ++|++|++++|.++.+|. .++++++|++|++++|...+.+| .+..+++|++|
T Consensus 280 Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L 358 (636)
T 4eco_A 280 VACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASL 358 (636)
T ss_dssp CTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCSSCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEEEESEE
T ss_pred CcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCCccCchhhhccCCCCCEEeCcCCcCccchh-hhCCCCCCCEE
Confidence 88886 565 677777766 778888888888777777 77788888888888877444777 67777788888
Q ss_pred ecCCCcccccCCccCCCCCC-CcccCeeEecCCCCCCCCccccccc--ccccccCcceeecCcCCCCChhhhhhhhccCC
Q 002308 645 LNSGTRSLRYMPVGIGRLTG-LRTLGEFHVSAGGGVDGSKACRLES--LKNLEHLQVCCIRRLGDVSDVGEAKLLELDKK 721 (938)
Q Consensus 645 ~l~~~~~~~~~p~~l~~l~~-L~~L~l~~~~~~~~~~~~~~~~l~~--l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~~ 721 (938)
++++|... .+|..++.+++ |+.|++++|.+.. ++. .+.. +++|+.|++++|.+.+..+............+
T Consensus 359 ~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l~~-lp~----~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~ 432 (636)
T 4eco_A 359 NLAYNQIT-EIPANFCGFTEQVENLSFAHNKLKY-IPN----IFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKG 432 (636)
T ss_dssp ECCSSEEE-ECCTTSEEECTTCCEEECCSSCCSS-CCS----CCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCC
T ss_pred ECCCCccc-cccHhhhhhcccCcEEEccCCcCcc-cch----hhhhcccCccCEEECcCCcCCCcchhhhcccccccccC
Confidence 88777544 67777777777 8888877777663 222 2333 33677777777766554443100000011145
Q ss_pred CcCCceEEEEecCCCCCCCCCccchHHHHh-hCCCCCCCCeEEEeeecCCCCCCCchhc--------cCCCCEEEEecCC
Q 002308 722 KYLSRLRLEFDKKGGGGGRRKNEDDQLLLE-ALQPPLNLKELEIHYYGGNTVFPSWMAS--------LTNLKSLDLCFCE 792 (938)
Q Consensus 722 ~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~-~l~~~~~L~~L~l~~~~~~~~~p~~~~~--------l~~L~~L~L~~~~ 792 (938)
.+|+.|++++|.+.. ++. .+..+++|+.|++++|.+.. +|..+.. +++|+.|+|++|.
T Consensus 433 ~~L~~L~Ls~N~l~~------------lp~~~~~~l~~L~~L~Ls~N~l~~-i~~~~~~~~~~~~~~l~~L~~L~Ls~N~ 499 (636)
T 4eco_A 433 INVSSINLSNNQISK------------FPKELFSTGSPLSSINLMGNMLTE-IPKNSLKDENENFKNTYLLTSIDLRFNK 499 (636)
T ss_dssp CCEEEEECCSSCCCS------------CCTHHHHTTCCCSEEECCSSCCSB-CCSSSSEETTEECTTGGGCCEEECCSSC
T ss_pred CCCCEEECcCCccCc------------CCHHHHccCCCCCEEECCCCCCCC-cCHHHhccccccccccCCccEEECcCCc
Confidence 577777777776653 111 22345677777777777774 6654332 1277777777776
Q ss_pred CCCcCCC-CC--CCCccceeecccccCceEeCcccccCCCCCCCCCCC------Ccc-------cccCCccceeeccccc
Q 002308 793 NCEQLPP-LG--KLPSLEQLFISYMSSVKRVGDEFLGVESDRHDSSSS------SSV-------IIAFPKLKSLSIFEME 856 (938)
Q Consensus 793 ~~~~l~~-l~--~l~~L~~L~L~~~~~l~~~~~~~~~~~~l~~~~~~~------~~~-------~~~~~~L~~L~l~~~~ 856 (938)
+. .+|. +. .+++|+.|+|++|. +..+|..+.....++.+++++ |.. ...+++|+.|+++++.
T Consensus 500 l~-~lp~~~~~~~l~~L~~L~Ls~N~-l~~ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~ 577 (636)
T 4eco_A 500 LT-KLSDDFRATTLPYLVGIDLSYNS-FSKFPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSND 577 (636)
T ss_dssp CC-BCCGGGSTTTCTTCCEEECCSSC-CSSCCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSC
T ss_pred CC-ccChhhhhccCCCcCEEECCCCC-CCCcChhhhcCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEECCCCc
Confidence 65 4444 44 77777777777776 444676666666666666633 222 2357889999998875
Q ss_pred cccccccccccccccccccccccceecccccccccCC-----C---CCCCCCCCcCEEEEecCcchH
Q 002308 857 ELEEWDYGITRTGNTFINIMPRLSSLTINYCSKLKAL-----P---DHIHQTTTLKELRIGECDLLE 915 (938)
Q Consensus 857 ~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l-----p---~~l~~l~~L~~L~l~~c~~l~ 915 (938)
+..++.. .+++|+.|+|++|+....- | .....+...+..++.+|+.+.
T Consensus 578 -l~~ip~~----------~~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~~~~~~i~~C~~L~ 633 (636)
T 4eco_A 578 -IRKVNEK----------ITPNISVLDIKDNPNISIDLSYVCPYIEAGMYMLFYDKTQDIRGCDALD 633 (636)
T ss_dssp -CCBCCSC----------CCTTCCEEECCSCTTCEEECTTTHHHHHTTCCEEECCTTSEEESCGGGC
T ss_pred -CCccCHh----------HhCcCCEEECcCCCCccccHHhcchhhhcccceeecCCccccCCCcccc
Confidence 3444332 2389999999998643311 1 122233445667889998753
No 13
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.95 E-value=6e-28 Score=280.02 Aligned_cols=369 Identities=17% Similarity=0.132 Sum_probs=221.8
Q ss_pred cCCCCcccccceEEEEccCCCcCc-ccccccCceeEEeccCCCCCCCCchhhHHHHHhccCCCeeEEecCCCCCCcccCc
Q 002308 508 NVPNSLDEKVRHLMLIMGKESTFP-ISTCRAKRIRSLLIEWPEFGHSSLNGEILEELFRESTSLRALDFPSFYLPLEIPR 586 (938)
Q Consensus 508 ~~~~~~~~~~r~l~l~~~~~~~~~-~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~n~~~~~lp~ 586 (938)
.+|...+..++++++++|.+...+ ..+..+++|++|++++|.+ ..+.+..|..+++|++|+|++|. ...+|.
T Consensus 14 ~ip~~~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l------~~~~~~~~~~l~~L~~L~Ls~N~-l~~lp~ 86 (520)
T 2z7x_B 14 HVPKDLSQKTTILNISQNYISELWTSDILSLSKLRILIISHNRI------QYLDISVFKFNQELEYLDLSHNK-LVKISC 86 (520)
T ss_dssp SCCCSCCTTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCC------CEEEGGGGTTCTTCCEEECCSSC-CCEEEC
T ss_pred cccccccccccEEECCCCcccccChhhccccccccEEecCCCcc------CCcChHHhhcccCCCEEecCCCc-eeecCc
Confidence 344555567777777777766544 4566777777777777664 22334446677777777777777 335665
Q ss_pred cccccCCCCeeeecCCcccc--ccccccCCCCccEEEcCCCCCcccccccccccCcc--ceeecCCCcc--cccCCccCC
Q 002308 587 NIEKLVHLRYLNLSDQKIKK--LPETLCELYNLEKLDISGCSDLRELPKGIGKLINM--KHLLNSGTRS--LRYMPVGIG 660 (938)
Q Consensus 587 ~~~~l~~L~~L~L~~~~i~~--lp~~i~~l~~L~~L~l~~~~~l~~lp~~i~~l~~L--~~L~l~~~~~--~~~~p~~l~ 660 (938)
. .+++|++|+|++|.++. +|..++++++|++|++++|.... ..+..+++| ++|++++|.. ....|..+.
T Consensus 87 ~--~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~---~~~~~l~~L~L~~L~l~~n~l~~~~~~~~~l~ 161 (520)
T 2z7x_B 87 H--PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK---SSVLPIAHLNISKVLLVLGETYGEKEDPEGLQ 161 (520)
T ss_dssp C--CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG---GGGGGGTTSCEEEEEEEECTTTTSSCCTTTTT
T ss_pred c--ccCCccEEeccCCccccccchhhhccCCcceEEEecCcccch---hhccccccceeeEEEeeccccccccccccccc
Confidence 5 67777777777777764 45677777777777777776332 345566666 7777777655 333444333
Q ss_pred C--------------------------CCCCcccCeeEecCCCC---CCCCccccccccc--------------------
Q 002308 661 R--------------------------LTGLRTLGEFHVSAGGG---VDGSKACRLESLK-------------------- 691 (938)
Q Consensus 661 ~--------------------------l~~L~~L~l~~~~~~~~---~~~~~~~~l~~l~-------------------- 691 (938)
. +++|+.|+++.|..... ..+. ...+..++
T Consensus 162 ~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~-~~~l~~l~~L~~L~l~~~~l~~~~~~~~ 240 (520)
T 2z7x_B 162 DFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSI-LAKLQTNPKLSNLTLNNIETTWNSFIRI 240 (520)
T ss_dssp TCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHH-HHGGGGCTTCCEEEEEEEEEEHHHHHHH
T ss_pred ccccceEEEEeccCcchhhhhhhhhhcccceeeccccccccccccceeecc-hhhhccccchhhccccccccCHHHHHHH
Confidence 3 44455555555430000 0000 00122222
Q ss_pred -------ccccCcceeecCcCCCCChhhhhhhhc-----cCCCcCCceEEEEecCCCCCCCCCccchHHHHh--------
Q 002308 692 -------NLEHLQVCCIRRLGDVSDVGEAKLLEL-----DKKKYLSRLRLEFDKKGGGGGRRKNEDDQLLLE-------- 751 (938)
Q Consensus 692 -------~L~~L~l~~~~~~~~~~~~~~~~~~~l-----~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~-------- 751 (938)
+|+.|++.+|...+..+. .+ ..+++|+.++++.|.+.- + ...+..
T Consensus 241 ~~~~~~~~L~~L~l~~n~l~~~~p~-------~~~~~~~~~l~~L~~l~l~~n~~~~------p--~~~~~~~~~~~~L~ 305 (520)
T 2z7x_B 241 LQLVWHTTVWYFSISNVKLQGQLDF-------RDFDYSGTSLKALSIHQVVSDVFGF------P--QSYIYEIFSNMNIK 305 (520)
T ss_dssp HHHHHTSSCSEEEEEEEEEESCCCC-------CCCCCCSCCCCEEEEEEEEECCCCS------C--THHHHHHHHTCCCS
T ss_pred HHHhhhCcccEEEeecccccCcccc-------chhhcccccCceeEeccccccceec------c--hhhhhcccccCcee
Confidence 333333333333222221 11 233333333333333200 0 000000
Q ss_pred -------------hCCCCCCCCeEEEeeecCCCCCCCchhccCCCCEEEEecCCCCC--cCCC-CCCCCccceeeccccc
Q 002308 752 -------------ALQPPLNLKELEIHYYGGNTVFPSWMASLTNLKSLDLCFCENCE--QLPP-LGKLPSLEQLFISYMS 815 (938)
Q Consensus 752 -------------~l~~~~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~--~l~~-l~~l~~L~~L~L~~~~ 815 (938)
.+..+++|++|++++|.+.+.+|.++..+++|+.|+|++|.+.. .+|. ++.+++|+.|++++|.
T Consensus 306 ~L~l~~n~l~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~ 385 (520)
T 2z7x_B 306 NFTVSGTRMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNS 385 (520)
T ss_dssp EEEEESSCCCCCCCCSSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSC
T ss_pred EEEcCCCccccccchhhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCc
Confidence 01567788888888888887777888888888888888887664 3333 7788888888888887
Q ss_pred CceEeCcc-cccCCCCCCCCCCCCcccc----cC-Cccceeeccccccccccccccccccccccccccccceeccccccc
Q 002308 816 SVKRVGDE-FLGVESDRHDSSSSSSVII----AF-PKLKSLSIFEMEELEEWDYGITRTGNTFINIMPRLSSLTINYCSK 889 (938)
Q Consensus 816 ~l~~~~~~-~~~~~~l~~~~~~~~~~~~----~~-~~L~~L~l~~~~~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~ 889 (938)
....+|.. +.....++.++++.|.... .+ ++|+.|+++++ +++.++. .+..+++|+.|++++| .
T Consensus 386 l~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~L~~L~Ls~N-~l~~ip~--------~~~~l~~L~~L~L~~N-~ 455 (520)
T 2z7x_B 386 VSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLPPRIKVLDLHSN-KIKSIPK--------QVVKLEALQELNVASN-Q 455 (520)
T ss_dssp CBCCGGGCSCCCCTTCCEEECCSSCCCGGGGGSCCTTCCEEECCSS-CCCCCCG--------GGGGCTTCCEEECCSS-C
T ss_pred CCcccccchhccCccCCEEECcCCCCCcchhhhhcccCCEEECCCC-cccccch--------hhhcCCCCCEEECCCC-c
Confidence 33336654 4455677777777776532 23 57888888876 3443332 1237899999999997 5
Q ss_pred ccCCCCC-CCCCCCcCEEEEecCcch
Q 002308 890 LKALPDH-IHQTTTLKELRIGECDLL 914 (938)
Q Consensus 890 l~~lp~~-l~~l~~L~~L~l~~c~~l 914 (938)
++.+|.. +..+++|++|++++|+..
T Consensus 456 l~~l~~~~~~~l~~L~~L~l~~N~~~ 481 (520)
T 2z7x_B 456 LKSVPDGIFDRLTSLQKIWLHTNPWD 481 (520)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred CCccCHHHhccCCcccEEECcCCCCc
Confidence 7788886 788999999999999864
No 14
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.95 E-value=3.7e-29 Score=299.34 Aligned_cols=359 Identities=14% Similarity=0.146 Sum_probs=246.6
Q ss_pred cccceEEEEccCCCc-CcccccccCceeEEec-cCCCCCCC---------------------------------------
Q 002308 515 EKVRHLMLIMGKEST-FPISTCRAKRIRSLLI-EWPEFGHS--------------------------------------- 553 (938)
Q Consensus 515 ~~~r~l~l~~~~~~~-~~~~~~~~~~Lr~L~l-~~~~~~~~--------------------------------------- 553 (938)
..+..|++.++.+.. +|..+.++++|+.|++ ++|.+...
T Consensus 323 ~~V~~L~Ls~~~L~G~ip~~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s~ 402 (876)
T 4ecn_A 323 GRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSD 402 (876)
T ss_dssp SCEEEEECTTTCCEEEECGGGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSCH
T ss_pred CCEEEEECccCCCCCcCchHHhccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcchhhhH
Confidence 568888888888764 7888889999999999 65532110
Q ss_pred ---------------------------------CchhhHHHHHhccCCCeeEEecCCCCCCc-----------------c
Q 002308 554 ---------------------------------SLNGEILEELFRESTSLRALDFPSFYLPL-----------------E 583 (938)
Q Consensus 554 ---------------------------------~~~~~~~~~~~~~~~~Lr~L~L~~n~~~~-----------------~ 583 (938)
.+.+ +| ..|.++++|++|+|++|.+.+ .
T Consensus 403 l~~~~l~~~~~~~~i~~~~~l~l~~l~l~~~~N~L~~-IP-~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~ 480 (876)
T 4ecn_A 403 LLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITF-IS-KAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQY 480 (876)
T ss_dssp HHHHHHHTCTTSCCCCCCCCCCCCTTTTTCCSCEEEE-EC-GGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHH
T ss_pred HHHHHhhhCccccccccccccchhhceeccccCcccc-hh-HHHhcCCCCCEEECcCCcCCCCccccccccccccccccc
Confidence 1111 33 347788899999999998666 2
Q ss_pred cCcccc--ccCCCCeeeecCCccc-cccccccCCCCccEEEcCCCC-Ccc-cccccccccC-------ccceeecCCCcc
Q 002308 584 IPRNIE--KLVHLRYLNLSDQKIK-KLPETLCELYNLEKLDISGCS-DLR-ELPKGIGKLI-------NMKHLLNSGTRS 651 (938)
Q Consensus 584 lp~~~~--~l~~L~~L~L~~~~i~-~lp~~i~~l~~L~~L~l~~~~-~l~-~lp~~i~~l~-------~L~~L~l~~~~~ 651 (938)
+|..++ ++++|++|+|++|.+. .+|..++++++|++|++++|. ... .+|..+..++ +|++|++++|.+
T Consensus 481 iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L 560 (876)
T 4ecn_A 481 ENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNL 560 (876)
T ss_dssp TTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCC
T ss_pred CChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcC
Confidence 888877 8999999999988754 788889999999999999987 444 6887777666 899999988866
Q ss_pred cccCCc--cCCCCCCCcccCeeEecCCCCCCCCcccccccccccccCcceeecCcCCCCChhhhhhhhccCCCc-CCceE
Q 002308 652 LRYMPV--GIGRLTGLRTLGEFHVSAGGGVDGSKACRLESLKNLEHLQVCCIRRLGDVSDVGEAKLLELDKKKY-LSRLR 728 (938)
Q Consensus 652 ~~~~p~--~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~~~~-L~~L~ 728 (938)
. .+|. .++++++|+.|++++|.+. .++ .+..+++|+.|++.+|.+. .++. .+..+++ |+.|+
T Consensus 561 ~-~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp-----~~~~L~~L~~L~Ls~N~l~-~lp~-------~l~~l~~~L~~L~ 625 (876)
T 4ecn_A 561 E-EFPASASLQKMVKLGLLDCVHNKVR-HLE-----AFGTNVKLTDLKLDYNQIE-EIPE-------DFCAFTDQVEGLG 625 (876)
T ss_dssp C-BCCCHHHHTTCTTCCEEECTTSCCC-BCC-----CCCTTSEESEEECCSSCCS-CCCT-------TSCEECTTCCEEE
T ss_pred C-ccCChhhhhcCCCCCEEECCCCCcc-cch-----hhcCCCcceEEECcCCccc-cchH-------HHhhccccCCEEE
Confidence 5 7888 7888889999988888776 322 4777888888888888766 3333 4666777 88888
Q ss_pred EEEecCCCCCCCCCccchHHHHhhCCCCC--CCCeEEEeeecCCCCCCCc---hh--ccCCCCEEEEecCCCCCcCCC--
Q 002308 729 LEFDKKGGGGGRRKNEDDQLLLEALQPPL--NLKELEIHYYGGNTVFPSW---MA--SLTNLKSLDLCFCENCEQLPP-- 799 (938)
Q Consensus 729 L~~~~~~~~~~~~~~~~~~~~~~~l~~~~--~L~~L~l~~~~~~~~~p~~---~~--~l~~L~~L~L~~~~~~~~l~~-- 799 (938)
|++|.+.. ++..+...+ +|+.|++++|.+.+.+|.. +. .+++|+.|+|++|.+. .+|.
T Consensus 626 Ls~N~L~~------------lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~-~lp~~~ 692 (876)
T 4ecn_A 626 FSHNKLKY------------IPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQ-KFPTEL 692 (876)
T ss_dssp CCSSCCCS------------CCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCC-SCCHHH
T ss_pred CcCCCCCc------------CchhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCC-ccCHHH
Confidence 88887654 233333332 3666666666665533322 11 2335666666666554 3333
Q ss_pred CCCCCccceeecccccCceEeCcccccCC--------CCCCCCCCCCccc--------ccCCccceeecccccccccccc
Q 002308 800 LGKLPSLEQLFISYMSSVKRVGDEFLGVE--------SDRHDSSSSSSVI--------IAFPKLKSLSIFEMEELEEWDY 863 (938)
Q Consensus 800 l~~l~~L~~L~L~~~~~l~~~~~~~~~~~--------~l~~~~~~~~~~~--------~~~~~L~~L~l~~~~~L~~~~~ 863 (938)
+..+++|+.|+|++|. +..+|...+... .+..++++.|.+. ..+++|+.|+++++. +..++
T Consensus 693 ~~~l~~L~~L~Ls~N~-L~~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~~lp~~l~~~~l~~L~~L~Ls~N~-L~~lp- 769 (876)
T 4ecn_A 693 FATGSPISTIILSNNL-MTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTSLSDDFRATTLPYLSNMDVSYNC-FSSFP- 769 (876)
T ss_dssp HHTTCCCSEEECCSCC-CSCCCTTSSSCTTSCCTTGGGCCEEECCSSCCCCCCGGGSTTTCTTCCEEECCSSC-CSSCC-
T ss_pred HccCCCCCEEECCCCc-CCccChHHhccccccccccCCccEEECCCCCCccchHHhhhccCCCcCEEEeCCCC-CCccc-
Confidence 3356666666666664 445555443322 4444444444331 156788888888763 33332
Q ss_pred ccccccccccccccccceecccc------cccccCCCCCCCCCCCcCEEEEecCcc
Q 002308 864 GITRTGNTFINIMPRLSSLTINY------CSKLKALPDHIHQTTTLKELRIGECDL 913 (938)
Q Consensus 864 ~~~~~~~~~~~~l~~L~~L~l~~------c~~l~~lp~~l~~l~~L~~L~l~~c~~ 913 (938)
..+..+++|+.|+|++ |.....+|..+.++++|++|++++|+.
T Consensus 770 -------~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L 818 (876)
T 4ecn_A 770 -------TQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDI 818 (876)
T ss_dssp -------CGGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC
T ss_pred -------hhhhcCCCCCEEECCCCCCcccccccccChHHHhcCCCCCEEECCCCCC
Confidence 2344789999999976 445667888888999999999999986
No 15
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.95 E-value=5.3e-28 Score=284.35 Aligned_cols=386 Identities=17% Similarity=0.130 Sum_probs=246.2
Q ss_pred EeeCCcccccCCCCcccccceEEEEccCCCcC-cccccccCceeEEeccCCCCCCCCchhhHHHHHhccCCCeeEEecCC
Q 002308 499 LEVNGSEELNVPNSLDEKVRHLMLIMGKESTF-PISTCRAKRIRSLLIEWPEFGHSSLNGEILEELFRESTSLRALDFPS 577 (938)
Q Consensus 499 ~~~~~~~~~~~~~~~~~~~r~l~l~~~~~~~~-~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~ 577 (938)
..+.......+|...+..++++++++|.++.. +..+..+++|++|++++|.+ ..+++..|.++++|++|+|++
T Consensus 12 ~~c~~~~l~~ip~~l~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i------~~i~~~~~~~l~~L~~L~L~~ 85 (570)
T 2z63_A 12 YQCMELNFYKIPDNLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEI------QTIEDGAYQSLSHLSTLILTG 85 (570)
T ss_dssp EECCSSCCSSCCSSSCSSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCC------CEECTTTTTTCTTCCEEECTT
T ss_pred EEeCCCCccccCCCccccccEEEccCCccCccChhHhhCCCCceEEECCCCcC------CccCcccccCchhCCEEeCcC
Confidence 44555555566777778999999999999875 45788999999999999875 334455688999999999999
Q ss_pred CCCCcccCccccccCCCCeeeecCCccccccc-cccCCCCccEEEcCCCCCcc-cccccccccCccceeecCCCcccccC
Q 002308 578 FYLPLEIPRNIEKLVHLRYLNLSDQKIKKLPE-TLCELYNLEKLDISGCSDLR-ELPKGIGKLINMKHLLNSGTRSLRYM 655 (938)
Q Consensus 578 n~~~~~lp~~~~~l~~L~~L~L~~~~i~~lp~-~i~~l~~L~~L~l~~~~~l~-~lp~~i~~l~~L~~L~l~~~~~~~~~ 655 (938)
|.+....|..|+++++|++|++++|.++.+|. .++++++|++|++++|.... .+|..+.++++|++|++++|......
T Consensus 86 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~ 165 (570)
T 2z63_A 86 NPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIY 165 (570)
T ss_dssp CCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEEC
T ss_pred CcCCccCHhhhcCccccccccccccccccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccceec
Confidence 99666566889999999999999999998876 69999999999999998544 47999999999999999999776666
Q ss_pred CccCCCCCCC----cccCeeEecCCCCCCCCcccccccccccccCcceeecCcC--------------------------
Q 002308 656 PVGIGRLTGL----RTLGEFHVSAGGGVDGSKACRLESLKNLEHLQVCCIRRLG-------------------------- 705 (938)
Q Consensus 656 p~~l~~l~~L----~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~-------------------------- 705 (938)
|..++.+++| +.|++++|.+....+.. +..+ +|+.|++.+|....
T Consensus 166 ~~~~~~l~~L~~~~~~L~l~~n~l~~~~~~~----~~~~-~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~ 240 (570)
T 2z63_A 166 CTDLRVLHQMPLLNLSLDLSLNPMNFIQPGA----FKEI-RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNE 240 (570)
T ss_dssp GGGGHHHHTCTTCCCEEECTTCCCCEECTTT----TTTC-EEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCC
T ss_pred HHHccchhccchhhhhcccCCCCceecCHHH----hccC-cceeEecccccccccchhhhhcCccccceeeeccccccCc
Confidence 6777777777 67777777655432221 2221 34444443321000
Q ss_pred ----CCC---------------------ChhhhhhhhccCCCcCCceEEEEecCCCCCCCCCccchHHHHhhCCCCCCCC
Q 002308 706 ----DVS---------------------DVGEAKLLELDKKKYLSRLRLEFDKKGGGGGRRKNEDDQLLLEALQPPLNLK 760 (938)
Q Consensus 706 ----~~~---------------------~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~ 760 (938)
... .........+..+++|+.|++++|.+.. ++..+..+ +|+
T Consensus 241 ~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~------------l~~~~~~~-~L~ 307 (570)
T 2z63_A 241 GNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIER------------VKDFSYNF-GWQ 307 (570)
T ss_dssp SSCEECCTTTTGGGGGSEEEEEEEEETTEEESCSTTTTGGGTTCSEEEEESCEECS------------CCBCCSCC-CCS
T ss_pred hhhhhcchhhhccccccchhhhhhhcchhhhhhchhhhcCcCcccEEEecCccchh------------hhhhhccC-Ccc
Confidence 000 0000011234556777777777776553 33444455 677
Q ss_pred eEEEeeecCCCCCCCchhccCCCCEEEEecCCCCCcCCCCCCCCccceeecccccCceEe---CcccccCCCCCCCCCCC
Q 002308 761 ELEIHYYGGNTVFPSWMASLTNLKSLDLCFCENCEQLPPLGKLPSLEQLFISYMSSVKRV---GDEFLGVESDRHDSSSS 837 (938)
Q Consensus 761 ~L~l~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~l~~l~~l~~L~~L~L~~~~~l~~~---~~~~~~~~~l~~~~~~~ 837 (938)
.|++++|.+.. +|. ..+++|+.|++++|......+. ..+++|+.|++++|. +..+ +..+.....++.++++.
T Consensus 308 ~L~l~~n~~~~-l~~--~~l~~L~~L~l~~n~~~~~~~~-~~~~~L~~L~l~~n~-l~~~~~~~~~~~~~~~L~~L~l~~ 382 (570)
T 2z63_A 308 HLELVNCKFGQ-FPT--LKLKSLKRLTFTSNKGGNAFSE-VDLPSLEFLDLSRNG-LSFKGCCSQSDFGTTSLKYLDLSF 382 (570)
T ss_dssp EEEEESCBCSS-CCB--CBCSSCCEEEEESCBSCCBCCC-CBCTTCCEEECCSSC-CBEEEEEEHHHHTCSCCCEEECCS
T ss_pred EEeeccCcccc-cCc--ccccccCEEeCcCCcccccccc-ccCCCCCEEeCcCCc-cCccccccccccccCccCEEECCC
Confidence 77777776664 554 2556666666666654443333 555666666666554 2222 23333444444444444
Q ss_pred Ccc------cccCCccceeeccccc--------------cccccccc---cccccccccccccccceecccccccc-cCC
Q 002308 838 SSV------IIAFPKLKSLSIFEME--------------ELEEWDYG---ITRTGNTFINIMPRLSSLTINYCSKL-KAL 893 (938)
Q Consensus 838 ~~~------~~~~~~L~~L~l~~~~--------------~L~~~~~~---~~~~~~~~~~~l~~L~~L~l~~c~~l-~~l 893 (938)
|.. ...+++|+.|++.++. +|+.+..+ .....+..+..+++|+.|++++|... ..+
T Consensus 383 n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~ 462 (570)
T 2z63_A 383 NGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFL 462 (570)
T ss_dssp CSEEEEEEEEETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEE
T ss_pred CccccccccccccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccc
Confidence 432 1234445555444321 11111110 11112233456777777777776544 356
Q ss_pred CCCCCCCCCcCEEEEecCcc
Q 002308 894 PDHIHQTTTLKELRIGECDL 913 (938)
Q Consensus 894 p~~l~~l~~L~~L~l~~c~~ 913 (938)
|..+..+++|++|++++|+.
T Consensus 463 p~~~~~l~~L~~L~l~~n~l 482 (570)
T 2z63_A 463 PDIFTELRNLTFLDLSQCQL 482 (570)
T ss_dssp CSCCTTCTTCCEEECTTSCC
T ss_pred hhhhhcccCCCEEECCCCcc
Confidence 77777777888888877764
No 16
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.95 E-value=1.3e-28 Score=288.06 Aligned_cols=371 Identities=17% Similarity=0.155 Sum_probs=252.8
Q ss_pred ccCCCCcccccceEEEEccCCCcC-cccccccCceeEEeccCCCCCCCCchhhHHHHHhccCCCeeEEecCCCCCCcccC
Q 002308 507 LNVPNSLDEKVRHLMLIMGKESTF-PISTCRAKRIRSLLIEWPEFGHSSLNGEILEELFRESTSLRALDFPSFYLPLEIP 585 (938)
Q Consensus 507 ~~~~~~~~~~~r~l~l~~~~~~~~-~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~n~~~~~lp 585 (938)
..+|...+..++++++++|.+... +..+..+++|++|++++|.+. .+++..|..+++|++|+|++|.+.+..|
T Consensus 18 ~~ip~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~------~~~~~~~~~l~~L~~L~Ls~n~l~~~~~ 91 (549)
T 2z81_A 18 TSIPSGLTAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRIN------TIEGDAFYSLGSLEHLDLSDNHLSSLSS 91 (549)
T ss_dssp SSCCSCCCTTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCC------EECTTTTTTCTTCCEEECTTSCCCSCCH
T ss_pred ccccccCCCCccEEECcCCccCccChhhhhcCCcccEEECCCCCcC------ccChhhccccccCCEEECCCCccCccCH
Confidence 345556668899999999998874 567889999999999998762 3344558889999999999999665555
Q ss_pred ccccccCCCCeeeecCCcccc--ccccccCCCCccEEEcCCCCCccccc-ccccccCccceeecCCCcccccCCccCCCC
Q 002308 586 RNIEKLVHLRYLNLSDQKIKK--LPETLCELYNLEKLDISGCSDLRELP-KGIGKLINMKHLLNSGTRSLRYMPVGIGRL 662 (938)
Q Consensus 586 ~~~~~l~~L~~L~L~~~~i~~--lp~~i~~l~~L~~L~l~~~~~l~~lp-~~i~~l~~L~~L~l~~~~~~~~~p~~l~~l 662 (938)
..|+++++|++|+|++|.++. .|..++++++|++|++++|..+..+| ..+..+++|++|++++|......|..++.+
T Consensus 92 ~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l 171 (549)
T 2z81_A 92 SWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSI 171 (549)
T ss_dssp HHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTC
T ss_pred HHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhcc
Confidence 669999999999999999884 56789999999999999998666676 478889999999999987777777777766
Q ss_pred CCCcccCeeEecCCCCCCCCcccccccccccccCcceeecCcCCC-----------------------------------
Q 002308 663 TGLRTLGEFHVSAGGGVDGSKACRLESLKNLEHLQVCCIRRLGDV----------------------------------- 707 (938)
Q Consensus 663 ~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~----------------------------------- 707 (938)
++|+.|++..|...... ...+..+++|+.|++.+|...+..
T Consensus 172 ~~L~~L~l~~n~~~~~~----~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~ 247 (549)
T 2z81_A 172 RDIHHLTLHLSESAFLL----EIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLL 247 (549)
T ss_dssp SEEEEEEEECSBSTTHH----HHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGG
T ss_pred ccCceEecccCcccccc----hhhHhhcccccEEEccCCccccccccccchhhhhhcccceeccccccchhHHHHHHHHh
Confidence 65555555444332100 000112233333333332221100
Q ss_pred ------------------------------CChhh------------------------------------------hhh
Q 002308 708 ------------------------------SDVGE------------------------------------------AKL 715 (938)
Q Consensus 708 ------------------------------~~~~~------------------------------------------~~~ 715 (938)
..... ...
T Consensus 248 ~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~~ip~ 327 (549)
T 2z81_A 248 RYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPC 327 (549)
T ss_dssp GGCTTCCEEEEESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSCCCCCCH
T ss_pred hhhccccccccccccccccccccccchhhhhhhcccccccccccccchhhhcccchhhhhhcccceEEEeccCccccCCH
Confidence 00000 000
Q ss_pred hhccCCCcCCceEEEEecCCCCCCCCCccchHHH---HhhCCCCCCCCeEEEeeecCCCCCC---CchhccCCCCEEEEe
Q 002308 716 LELDKKKYLSRLRLEFDKKGGGGGRRKNEDDQLL---LEALQPPLNLKELEIHYYGGNTVFP---SWMASLTNLKSLDLC 789 (938)
Q Consensus 716 ~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~---~~~l~~~~~L~~L~l~~~~~~~~~p---~~~~~l~~L~~L~L~ 789 (938)
..+..+++|+.|++++|.+.+ .+ ...+..+++|+.|++++|.+.. +| ..+..+++|+.|+|+
T Consensus 328 ~~~~~l~~L~~L~Ls~N~l~~-----------~~~~~~~~~~~l~~L~~L~Ls~N~l~~-~~~~~~~~~~l~~L~~L~Ls 395 (549)
T 2z81_A 328 SFSQHLKSLEFLDLSENLMVE-----------EYLKNSACKGAWPSLQTLVLSQNHLRS-MQKTGEILLTLKNLTSLDIS 395 (549)
T ss_dssp HHHHHCTTCCEEECCSSCCCH-----------HHHHHHTCTTSSTTCCEEECTTSCCCC-HHHHHHHGGGCTTCCEEECT
T ss_pred HHHhcCccccEEEccCCcccc-----------ccccchhhhhccccCcEEEccCCcccc-cccchhhhhcCCCCCEEECC
Confidence 001234445555555444432 22 2336677888888888888877 44 346788888899998
Q ss_pred cCCCCCcCCC-CCCCCccceeecccccCceEeCcccccCCCCCCCCCCCCccc---ccCCccceeecccccccccccccc
Q 002308 790 FCENCEQLPP-LGKLPSLEQLFISYMSSVKRVGDEFLGVESDRHDSSSSSSVI---IAFPKLKSLSIFEMEELEEWDYGI 865 (938)
Q Consensus 790 ~~~~~~~l~~-l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~---~~~~~L~~L~l~~~~~L~~~~~~~ 865 (938)
+|.+.. +|. ++.+++|+.|++++|. ++.++..+. ..++.++++.|.+. ..+++|+.|+++++ +++.++.
T Consensus 396 ~N~l~~-lp~~~~~~~~L~~L~Ls~N~-l~~l~~~~~--~~L~~L~Ls~N~l~~~~~~l~~L~~L~Ls~N-~l~~ip~-- 468 (549)
T 2z81_A 396 RNTFHP-MPDSCQWPEKMRFLNLSSTG-IRVVKTCIP--QTLEVLDVSNNNLDSFSLFLPRLQELYISRN-KLKTLPD-- 468 (549)
T ss_dssp TCCCCC-CCSCCCCCTTCCEEECTTSC-CSCCCTTSC--TTCSEEECCSSCCSCCCCCCTTCCEEECCSS-CCSSCCC--
T ss_pred CCCCcc-CChhhcccccccEEECCCCC-cccccchhc--CCceEEECCCCChhhhcccCChhcEEECCCC-ccCcCCC--
Confidence 887664 444 7888889999998887 666655432 45677777777654 35778888888886 4554432
Q ss_pred ccccccccccccccceecccccccccCCC-CCCCCCCCcCEEEEecCcch
Q 002308 866 TRTGNTFINIMPRLSSLTINYCSKLKALP-DHIHQTTTLKELRIGECDLL 914 (938)
Q Consensus 866 ~~~~~~~~~~l~~L~~L~l~~c~~l~~lp-~~l~~l~~L~~L~l~~c~~l 914 (938)
...+++|+.|+|++|+ ++.+| ..+..+++|+.|++++|+..
T Consensus 469 -------~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~l~~N~~~ 510 (549)
T 2z81_A 469 -------ASLFPVLLVMKISRNQ-LKSVPDGIFDRLTSLQKIWLHTNPWD 510 (549)
T ss_dssp -------GGGCTTCCEEECCSSC-CCCCCTTGGGGCTTCCEEECCSSCBC
T ss_pred -------cccCccCCEEecCCCc-cCCcCHHHHhcCcccCEEEecCCCcc
Confidence 1368999999999975 55554 45788999999999999853
No 17
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.95 E-value=3.9e-28 Score=276.66 Aligned_cols=371 Identities=15% Similarity=0.110 Sum_probs=271.6
Q ss_pred ccCCCCcccccceEEEEccCCCcC-cccccccCceeEEeccCCCCCCCCchhhHHHHHhccCCCeeEEecCCCCCCcccC
Q 002308 507 LNVPNSLDEKVRHLMLIMGKESTF-PISTCRAKRIRSLLIEWPEFGHSSLNGEILEELFRESTSLRALDFPSFYLPLEIP 585 (938)
Q Consensus 507 ~~~~~~~~~~~r~l~l~~~~~~~~-~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~n~~~~~lp 585 (938)
..+|. .+..++++++++|.+... +..+..+++|+.|.+++|.+. ..+++..|..+++|++|+|++|.+....|
T Consensus 23 ~~lp~-l~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~-----~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~ 96 (455)
T 3v47_A 23 HQVPE-LPAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPG-----LVIRNNTFRGLSSLIILKLDYNQFLQLET 96 (455)
T ss_dssp SSCCC-CCTTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTT-----CEECTTTTTTCTTCCEEECTTCTTCEECT
T ss_pred ccCCC-CCCccCEEEecCCccCcCChhHhccCccccEEECcCCccc-----ceECcccccccccCCEEeCCCCccCccCh
Confidence 34444 668899999999998874 677889999999999988642 23345558889999999999999766678
Q ss_pred ccccccCCCCeeeecCCcccc-cccc--ccCCCCccEEEcCCCCCccccccc-ccccCccceeecCCCcccccCCccCCC
Q 002308 586 RNIEKLVHLRYLNLSDQKIKK-LPET--LCELYNLEKLDISGCSDLRELPKG-IGKLINMKHLLNSGTRSLRYMPVGIGR 661 (938)
Q Consensus 586 ~~~~~l~~L~~L~L~~~~i~~-lp~~--i~~l~~L~~L~l~~~~~l~~lp~~-i~~l~~L~~L~l~~~~~~~~~p~~l~~ 661 (938)
..|+++++|++|+|++|.++. .|.. +.++++|++|++++|......|.. +..+++|++|++++|......|..+..
T Consensus 97 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~ 176 (455)
T 3v47_A 97 GAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLN 176 (455)
T ss_dssp TTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGG
T ss_pred hhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccChhhhhc
Confidence 899999999999999999884 4544 889999999999999955555665 789999999999999777777777776
Q ss_pred C--CCCcccCeeEecCCCCCCCCcc----cccccccccccCcceeecCcCCCCChhhhhhhhccCCCcCCceEEEEecCC
Q 002308 662 L--TGLRTLGEFHVSAGGGVDGSKA----CRLESLKNLEHLQVCCIRRLGDVSDVGEAKLLELDKKKYLSRLRLEFDKKG 735 (938)
Q Consensus 662 l--~~L~~L~l~~~~~~~~~~~~~~----~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~ 735 (938)
+ .+|+.|++.+|.+....+.... ..+..+++|+.|++++|.+.+..+ ..........+|+.|+++.|...
T Consensus 177 l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~----~~~~~~~~~~~L~~L~l~~~~~~ 252 (455)
T 3v47_A 177 FQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMA----KRFFDAIAGTKIQSLILSNSYNM 252 (455)
T ss_dssp GTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHH----HHHHHHTTTCCEEEEECTTCTTT
T ss_pred cccccccccccccCcccccchhhccccccccccccceeeeEecCCCcccccch----hhhhccccccceeeEeecccccc
Confidence 6 6788888888877653222111 113355788888888886643221 11112233478888888877543
Q ss_pred CCCCC--CCccchHHHHhhCCCCCCCCeEEEeeecCCCCCCCchhccCCCCEEEEecCCCCCcCCC-CCCCCccceeecc
Q 002308 736 GGGGR--RKNEDDQLLLEALQPPLNLKELEIHYYGGNTVFPSWMASLTNLKSLDLCFCENCEQLPP-LGKLPSLEQLFIS 812 (938)
Q Consensus 736 ~~~~~--~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~l~~-l~~l~~L~~L~L~ 812 (938)
..... ............ ...++|+.|++++|.+.+..|.++..+++|+.|+|++|.+.+..|. ++.+++|+.|+|+
T Consensus 253 ~~~~~~~~~~~~~~~~~~~-~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls 331 (455)
T 3v47_A 253 GSSFGHTNFKDPDNFTFKG-LEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLS 331 (455)
T ss_dssp SCCTTCCSSCCCCTTTTGG-GTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECC
T ss_pred ccccchhhhccCccccccc-ccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECC
Confidence 21000 000000000000 1246899999999999987788899999999999999988877664 9999999999999
Q ss_pred cccCceEeCcccccCCCCCCCCCCCCcccccCCccceeeccccccccccccccccccccccccccccceecccccccccC
Q 002308 813 YMSSVKRVGDEFLGVESDRHDSSSSSSVIIAFPKLKSLSIFEMEELEEWDYGITRTGNTFINIMPRLSSLTINYCSKLKA 892 (938)
Q Consensus 813 ~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~ 892 (938)
+|. +..++...+ ..+++|+.|+++++. +..+ .+..+..+++|+.|++++| .++.
T Consensus 332 ~N~-l~~~~~~~~----------------~~l~~L~~L~Ls~N~-l~~~-------~~~~~~~l~~L~~L~L~~N-~l~~ 385 (455)
T 3v47_A 332 QNF-LGSIDSRMF----------------ENLDKLEVLDLSYNH-IRAL-------GDQSFLGLPNLKELALDTN-QLKS 385 (455)
T ss_dssp SSC-CCEECGGGG----------------TTCTTCCEEECCSSC-CCEE-------CTTTTTTCTTCCEEECCSS-CCSC
T ss_pred CCc-cCCcChhHh----------------cCcccCCEEECCCCc-cccc-------ChhhccccccccEEECCCC-cccc
Confidence 997 555543322 268899999999874 3332 2233557999999999996 5667
Q ss_pred CCCC-CCCCCCcCEEEEecCcch
Q 002308 893 LPDH-IHQTTTLKELRIGECDLL 914 (938)
Q Consensus 893 lp~~-l~~l~~L~~L~l~~c~~l 914 (938)
+|.. +..+++|++|++++|+.-
T Consensus 386 ~~~~~~~~l~~L~~L~l~~N~l~ 408 (455)
T 3v47_A 386 VPDGIFDRLTSLQKIWLHTNPWD 408 (455)
T ss_dssp CCTTTTTTCTTCCEEECCSSCBC
T ss_pred CCHhHhccCCcccEEEccCCCcc
Confidence 7754 578999999999998863
No 18
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.95 E-value=3.5e-27 Score=283.19 Aligned_cols=394 Identities=18% Similarity=0.145 Sum_probs=239.2
Q ss_pred EeeCCcccccCCCCcccccceEEEEccCCCcCcc-cccccCceeEEeccCCCCCCCCchhhHHHHHhccCCCeeEEecCC
Q 002308 499 LEVNGSEELNVPNSLDEKVRHLMLIMGKESTFPI-STCRAKRIRSLLIEWPEFGHSSLNGEILEELFRESTSLRALDFPS 577 (938)
Q Consensus 499 ~~~~~~~~~~~~~~~~~~~r~l~l~~~~~~~~~~-~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~ 577 (938)
.++.+.....+|...+..++++++++|.+...+. .+..+++|++|++++|.+. .+.+..|..+++|++|+|++
T Consensus 9 ~~cs~~~L~~ip~~~~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~------~~~~~~~~~l~~L~~L~L~~ 82 (680)
T 1ziw_A 9 ADCSHLKLTQVPDDLPTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTIS------KLEPELCQKLPMLKVLNLQH 82 (680)
T ss_dssp EECCSSCCSSCCSCSCTTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCC------CCCTTHHHHCTTCCEEECCS
T ss_pred eECCCCCccccccccCCCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccC------ccCHHHHhcccCcCEEECCC
Confidence 4455544555676777899999999999988654 6889999999999998763 23345588899999999999
Q ss_pred CCCCcccCc-cccccCCCCeeeecCCcccccc-ccccCCCCccEEEcCCCCCcccccccccccCccceeecCCCcccccC
Q 002308 578 FYLPLEIPR-NIEKLVHLRYLNLSDQKIKKLP-ETLCELYNLEKLDISGCSDLRELPKGIGKLINMKHLLNSGTRSLRYM 655 (938)
Q Consensus 578 n~~~~~lp~-~~~~l~~L~~L~L~~~~i~~lp-~~i~~l~~L~~L~l~~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~ 655 (938)
|.+. .+|. .|+++++|++|+|++|.+..+| ..|+++++|++|++++|......|..+..+++|++|++++|......
T Consensus 83 n~l~-~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~ 161 (680)
T 1ziw_A 83 NELS-QLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALK 161 (680)
T ss_dssp SCCC-CCCTTTTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBC
T ss_pred CccC-ccChhhhccCCCCCEEECCCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcccccC
Confidence 9944 5554 6999999999999999999877 57999999999999999866667777889999999999998655444
Q ss_pred CccCC--CCCCCcccCeeEecCCCCCCCCcc-----------------------------------------------cc
Q 002308 656 PVGIG--RLTGLRTLGEFHVSAGGGVDGSKA-----------------------------------------------CR 686 (938)
Q Consensus 656 p~~l~--~l~~L~~L~l~~~~~~~~~~~~~~-----------------------------------------------~~ 686 (938)
+..+. .+++|+.|++++|.+....+.... ..
T Consensus 162 ~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~ 241 (680)
T 1ziw_A 162 SEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTT 241 (680)
T ss_dssp HHHHGGGTTCEESEEECTTCCCCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTT
T ss_pred HHHhhccccccccEEECCCCcccccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChhH
Confidence 44333 457788888877766543322100 01
Q ss_pred ccccc--ccccCcceeecCcCCCCChhhhhhhhccCCCcCCceEEEEecCCCCCCCCCcc---------------c---h
Q 002308 687 LESLK--NLEHLQVCCIRRLGDVSDVGEAKLLELDKKKYLSRLRLEFDKKGGGGGRRKNE---------------D---D 746 (938)
Q Consensus 687 l~~l~--~L~~L~l~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~---------------~---~ 746 (938)
+..+. +|+.|++++|......+. .+..+++|+.|++++|.+.......... . .
T Consensus 242 ~~~l~~~~L~~L~Ls~n~l~~~~~~-------~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~ 314 (680)
T 1ziw_A 242 FLGLKWTNLTMLDLSYNNLNVVGND-------SFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISL 314 (680)
T ss_dssp TGGGGGSCCCEEECTTSCCCEECTT-------TTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC----
T ss_pred hhccCcCCCCEEECCCCCcCccCcc-------cccCcccccEeeCCCCccCccChhhhcCCCCccEEeccchhhhccccc
Confidence 11221 144444444433222211 3555667777777766554311000000 0 0
Q ss_pred HHHHh----hCCCCCCCCeEEEeeecCCCCCCCchhccCCCCEEEEecCCC----------------------------C
Q 002308 747 QLLLE----ALQPPLNLKELEIHYYGGNTVFPSWMASLTNLKSLDLCFCEN----------------------------C 794 (938)
Q Consensus 747 ~~~~~----~l~~~~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~L~~~~~----------------------------~ 794 (938)
..++. .+..+++|+.|++++|.+.+..|.++..+++|+.|+|++|.. .
T Consensus 315 ~~lp~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~ 394 (680)
T 1ziw_A 315 ASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKIS 394 (680)
T ss_dssp --CCEECTTTTTTCTTCCEEECCSCCBCCCCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCC
T ss_pred ccccccChhhcccCCCCCEEECCCCccCCCChhHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCC
Confidence 01111 445567777777777777775555666677777777666532 1
Q ss_pred CcCCC-CCCCCccceeecccccCceEeC-cccccCCCCCCCCCCCCccc-------ccCCccceeecccccccccccccc
Q 002308 795 EQLPP-LGKLPSLEQLFISYMSSVKRVG-DEFLGVESDRHDSSSSSSVI-------IAFPKLKSLSIFEMEELEEWDYGI 865 (938)
Q Consensus 795 ~~l~~-l~~l~~L~~L~L~~~~~l~~~~-~~~~~~~~l~~~~~~~~~~~-------~~~~~L~~L~l~~~~~L~~~~~~~ 865 (938)
...|. ++.+++|+.|++++|.....++ ..+.+...++.++++.|... ..+|+|+.|.+.++. +..
T Consensus 395 ~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~-l~~----- 468 (680)
T 1ziw_A 395 KIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVA-LKN----- 468 (680)
T ss_dssp EECTTTTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSC-CBC-----
T ss_pred eEChhhhhCCCCCCEEeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhcccc-ccc-----
Confidence 11121 4444445555555444222333 22233333444444333321 123344444443321 000
Q ss_pred ccccccccccccccceecccccccccCCCC-CCCCCCCcCEEEEecCcc
Q 002308 866 TRTGNTFINIMPRLSSLTINYCSKLKALPD-HIHQTTTLKELRIGECDL 913 (938)
Q Consensus 866 ~~~~~~~~~~l~~L~~L~l~~c~~l~~lp~-~l~~l~~L~~L~l~~c~~ 913 (938)
....+..+..+++|+.|++++|. ++.+|. .+..+++|++|++++|+.
T Consensus 469 ~~~~p~~~~~l~~L~~L~Ls~N~-l~~i~~~~~~~l~~L~~L~Ls~N~l 516 (680)
T 1ziw_A 469 VDSSPSPFQPLRNLTILDLSNNN-IANINDDMLEGLEKLEILDLQHNNL 516 (680)
T ss_dssp TTCSSCTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred cccCCcccccCCCCCEEECCCCC-CCcCChhhhccccccCEEeCCCCCc
Confidence 01223445567778888888754 445543 466777788888877765
No 19
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.95 E-value=1.1e-27 Score=283.56 Aligned_cols=367 Identities=16% Similarity=0.111 Sum_probs=190.0
Q ss_pred cccceEEEEccCCCc-CcccccccCceeEEeccCCCCCCCCchhhHHHHHhccCCCeeEEecCCCCCCcccCccccccCC
Q 002308 515 EKVRHLMLIMGKEST-FPISTCRAKRIRSLLIEWPEFGHSSLNGEILEELFRESTSLRALDFPSFYLPLEIPRNIEKLVH 593 (938)
Q Consensus 515 ~~~r~l~l~~~~~~~-~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~n~~~~~lp~~~~~l~~ 593 (938)
.+++.+++++|.+.. .+..+..+++|++|.+++|.+. .+.+..|..+++|++|+|++|.+....|..++++++
T Consensus 57 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~------~~~~~~~~~l~~L~~L~L~~n~i~~l~~~~~~~l~~ 130 (606)
T 3t6q_A 57 INLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLI------FMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKT 130 (606)
T ss_dssp TTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCS------EECTTTTSSCTTCCEEECTTSCCSCGGGSCCTTCTT
T ss_pred ccceEEECCCCccceeChhhccCccccCeeeCCCCccc------ccChhhhcccccccEeeccccCcccCCcchhccCCc
Confidence 567777777777665 3556777777777777777642 223334667777777777777744434556677777
Q ss_pred CCeeeecCCcccccc-ccccCCCCccEEEcCCCCCcccccccccccCccc--eeecCCCcccccCCc-------------
Q 002308 594 LRYLNLSDQKIKKLP-ETLCELYNLEKLDISGCSDLRELPKGIGKLINMK--HLLNSGTRSLRYMPV------------- 657 (938)
Q Consensus 594 L~~L~L~~~~i~~lp-~~i~~l~~L~~L~l~~~~~l~~lp~~i~~l~~L~--~L~l~~~~~~~~~p~------------- 657 (938)
|++|++++|.+..++ +.+..+++|++|++++|......|..+..+++|+ .|++++|......|.
T Consensus 131 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~L~l~~n~l~~~~~~~~~~~~L~~L~l~ 210 (606)
T 3t6q_A 131 LESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFG 210 (606)
T ss_dssp CCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEECHHHHHTTTTCCSEEEECTTCCCCEECTTTTTTCEEEEEECT
T ss_pred ccEEECCCCcccccCcccccCCcccCEEEcccCcccccChhhhhhhcccceeEEecCCCccCccChhHhhhccccccccC
Confidence 777777777776542 2333467777777777664444455566666666 555555543332222
Q ss_pred --------------------------------------------------------------cCCCCCCCcccCeeEecC
Q 002308 658 --------------------------------------------------------------GIGRLTGLRTLGEFHVSA 675 (938)
Q Consensus 658 --------------------------------------------------------------~l~~l~~L~~L~l~~~~~ 675 (938)
.++.+++|+.|++++|.+
T Consensus 211 ~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l 290 (606)
T 3t6q_A 211 GTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHL 290 (606)
T ss_dssp TCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTSCC
T ss_pred CchhHHHHhhhccccchhheechhhccccccccChhHhchhhcCceeEEEeecCccCccCHHHhccccCCCEEeccCCcc
Confidence 233444444444444433
Q ss_pred CCCCCCCcccccccccccccCcceeecCcCCCCChhhhhhhhccCCCcCCceEEEEecCCCCCCCCCccchHHHHhhCCC
Q 002308 676 GGGVDGSKACRLESLKNLEHLQVCCIRRLGDVSDVGEAKLLELDKKKYLSRLRLEFDKKGGGGGRRKNEDDQLLLEALQP 755 (938)
Q Consensus 676 ~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~ 755 (938)
.. ++..+..+++|+.|++.+|......+. .+..+++|+.|++++|.+... .....+..
T Consensus 291 ~~-----lp~~l~~l~~L~~L~l~~n~l~~~~~~-------~~~~l~~L~~L~l~~n~~~~~----------~~~~~~~~ 348 (606)
T 3t6q_A 291 SE-----LPSGLVGLSTLKKLVLSANKFENLCQI-------SASNFPSLTHLSIKGNTKRLE----------LGTGCLEN 348 (606)
T ss_dssp SC-----CCSSCCSCTTCCEEECTTCCCSBGGGG-------CGGGCTTCSEEECCSCSSCCB----------CCSSTTTT
T ss_pred CC-----CChhhcccccCCEEECccCCcCcCchh-------hhhccCcCCEEECCCCCcccc----------cchhhhhc
Confidence 32 111233444444444444433222111 233444455555544433210 00112344
Q ss_pred CCCCCeEEEeeecCCCCC--CCchhccCCCCEEEEecCCCCCcCCC-CCCCCccceeecccccCceEeCcc-cccCCCCC
Q 002308 756 PLNLKELEIHYYGGNTVF--PSWMASLTNLKSLDLCFCENCEQLPP-LGKLPSLEQLFISYMSSVKRVGDE-FLGVESDR 831 (938)
Q Consensus 756 ~~~L~~L~l~~~~~~~~~--p~~~~~l~~L~~L~L~~~~~~~~l~~-l~~l~~L~~L~L~~~~~l~~~~~~-~~~~~~l~ 831 (938)
+++|+.|++++|.+.... |..+..+++|+.|++++|.+....|. ++.+++|+.|++++|......+.. +.....+.
T Consensus 349 l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~ 428 (606)
T 3t6q_A 349 LENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLK 428 (606)
T ss_dssp CTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCC
T ss_pred cCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCC
Confidence 455555555555544421 33444555555555555544443333 455555555555555422122222 23334444
Q ss_pred CCCCCCCcc-------cccCCccceeeccccccccccccccccccccccccccccceecccccccccCCCCCCCCCCCcC
Q 002308 832 HDSSSSSSV-------IIAFPKLKSLSIFEMEELEEWDYGITRTGNTFINIMPRLSSLTINYCSKLKALPDHIHQTTTLK 904 (938)
Q Consensus 832 ~~~~~~~~~-------~~~~~~L~~L~l~~~~~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~ 904 (938)
.++++.|.. ...+++|+.|+++++. +..... .....+..+++|+.|++++|......|..+..+++|+
T Consensus 429 ~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~----~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~ 503 (606)
T 3t6q_A 429 VLNLSHSLLDISSEQLFDGLPALQHLNLQGNH-FPKGNI----QKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMN 503 (606)
T ss_dssp EEECTTCCCBTTCTTTTTTCTTCCEEECTTCB-CGGGEE----CSSCGGGGCTTCCEEECTTSCCCEECTTTTTTCTTCC
T ss_pred EEECCCCccCCcCHHHHhCCCCCCEEECCCCC-CCcccc----ccchhhccCCCccEEECCCCccCccChhhhccccCCC
Confidence 444444432 1234555555555542 111000 0112345778888888888755444567777888888
Q ss_pred EEEEecCcch
Q 002308 905 ELRIGECDLL 914 (938)
Q Consensus 905 ~L~l~~c~~l 914 (938)
+|++++|+..
T Consensus 504 ~L~Ls~N~l~ 513 (606)
T 3t6q_A 504 HVDLSHNRLT 513 (606)
T ss_dssp EEECCSSCCC
T ss_pred EEECCCCccC
Confidence 8888888753
No 20
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.94 E-value=5.8e-27 Score=277.32 Aligned_cols=370 Identities=16% Similarity=0.121 Sum_probs=269.9
Q ss_pred cceEEEEccCCCcCcccccccCceeEEeccCCCCCCCCchhhHHHHHhccCCCeeEEecCCCCCCcccCccccccCCCCe
Q 002308 517 VRHLMLIMGKESTFPISTCRAKRIRSLLIEWPEFGHSSLNGEILEELFRESTSLRALDFPSFYLPLEIPRNIEKLVHLRY 596 (938)
Q Consensus 517 ~r~l~l~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~n~~~~~lp~~~~~l~~L~~ 596 (938)
-+.++..++.++.+|..+. +++++|++++|.+ ..+++..|.++++|++|+|++|.+....|..|+++++|++
T Consensus 13 ~~~~~c~~~~l~~ip~~~~--~~l~~L~Ls~n~l------~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~ 84 (606)
T 3vq2_A 13 NITYQCMDQKLSKVPDDIP--SSTKNIDLSFNPL------KILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSN 84 (606)
T ss_dssp TTEEECTTSCCSSCCTTSC--TTCCEEECTTSCC------CEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCE
T ss_pred CCceEccCCCcccCCCCCC--CCcCEEECCCCCc------CEeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCE
Confidence 3567777778888887654 8999999999986 2334545889999999999999966666888999999999
Q ss_pred eeecCCccccc-cccccCCCCccEEEcCCCCCcccccccccccCccceeecCCCcccc-cCCccCCCCCCCcccCeeEec
Q 002308 597 LNLSDQKIKKL-PETLCELYNLEKLDISGCSDLRELPKGIGKLINMKHLLNSGTRSLR-YMPVGIGRLTGLRTLGEFHVS 674 (938)
Q Consensus 597 L~L~~~~i~~l-p~~i~~l~~L~~L~l~~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~-~~p~~l~~l~~L~~L~l~~~~ 674 (938)
|+|++|.++.+ |..|+++++|++|++++|......|..++++++|++|++++|.... .+|..++++++|+.|++++|.
T Consensus 85 L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~ 164 (606)
T 3vq2_A 85 LILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNY 164 (606)
T ss_dssp EECTTCCCCCCCTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSC
T ss_pred eECCCCcccccChhhcCCcccCCEEEccCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCc
Confidence 99999999977 7889999999999999999555455789999999999999997665 579999999999999999998
Q ss_pred CCCCCCCCcccccccccccc----cCcceeecCcCCCCChhhhhhhhccCCCcCCceEEEEecCC---------------
Q 002308 675 AGGGVDGSKACRLESLKNLE----HLQVCCIRRLGDVSDVGEAKLLELDKKKYLSRLRLEFDKKG--------------- 735 (938)
Q Consensus 675 ~~~~~~~~~~~~l~~l~~L~----~L~l~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~--------------- 735 (938)
+....+. .+..+.+|+ .|++.+|......+. .+. ..+|+.|++++|.+.
T Consensus 165 l~~~~~~----~~~~l~~L~~~l~~L~l~~n~l~~~~~~-------~~~-~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~ 232 (606)
T 3vq2_A 165 IQTITVN----DLQFLRENPQVNLSLDMSLNPIDFIQDQ-------AFQ-GIKLHELTLRGNFNSSNIMKTCLQNLAGLH 232 (606)
T ss_dssp CCEECTT----TTHHHHHCTTCCCEEECTTCCCCEECTT-------TTT-TCEEEEEEEESCCSCHHHHHHHHHTTTTCE
T ss_pred ceecChh----hhhhhhccccccceeeccCCCcceeCcc-------ccc-CceeeeeeccCCccchhHHHHHhccccccc
Confidence 7763332 255555554 577777766543332 122 225666666665432
Q ss_pred ----------CCCCC----------------------CCccchHHHHhhCCCCCCCCeEEEeeecCCCCCCCchhccCCC
Q 002308 736 ----------GGGGR----------------------RKNEDDQLLLEALQPPLNLKELEIHYYGGNTVFPSWMASLTNL 783 (938)
Q Consensus 736 ----------~~~~~----------------------~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~p~~~~~l~~L 783 (938)
..... .........+. +..+++|+.|++++|.+.. +| ++..+++|
T Consensus 233 ~l~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~-~~~l~~L~~L~l~~~~~~~-l~-~l~~~~~L 309 (606)
T 3vq2_A 233 VHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVK-FHCLANVSAMSLAGVSIKY-LE-DVPKHFKW 309 (606)
T ss_dssp EEEEEEECCTTSCCCSCCCGGGGTTGGGSEEEEEEECCCTTCCGGGGS-CGGGTTCSEEEEESCCCCC-CC-CCCTTCCC
T ss_pred cccccccccccCCcccccChHHhhhhhhccHhheeccccccccccccc-cccCCCCCEEEecCccchh-hh-hccccccC
Confidence 10000 00001111222 6667899999999999987 78 78899999
Q ss_pred CEEEEecCCCCCcCCCCCCCCccceeecccccCceEeCcccccCCCCCCCCCCCCccc---------ccCCccceeeccc
Q 002308 784 KSLDLCFCENCEQLPPLGKLPSLEQLFISYMSSVKRVGDEFLGVESDRHDSSSSSSVI---------IAFPKLKSLSIFE 854 (938)
Q Consensus 784 ~~L~L~~~~~~~~l~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~---------~~~~~L~~L~l~~ 854 (938)
+.|++++|.+ ..+|.+ .+++|+.|++++|..+..+ .+.....++.++++.|... ..+++|+.|++.+
T Consensus 310 ~~L~l~~n~l-~~lp~~-~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~ 385 (606)
T 3vq2_A 310 QSLSIIRCQL-KQFPTL-DLPFLKSLTLTMNKGSISF--KKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSF 385 (606)
T ss_dssp SEEEEESCCC-SSCCCC-CCSSCCEEEEESCSSCEEC--CCCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCS
T ss_pred CEEEcccccC-cccccC-CCCccceeeccCCcCccch--hhccCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCC
Confidence 9999999988 777878 9999999999999766655 4456677888888877642 3578899998876
Q ss_pred cc------------ccccccccccc---ccc-cccccccccceecccccccccCCCCCCCCCCCcCEEEEecCcc
Q 002308 855 ME------------ELEEWDYGITR---TGN-TFINIMPRLSSLTINYCSKLKALPDHIHQTTTLKELRIGECDL 913 (938)
Q Consensus 855 ~~------------~L~~~~~~~~~---~~~-~~~~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~~ 913 (938)
+. +|+.+....+. ..+ ..+..+++|+.|++++|......|..+..+++|++|++++|+.
T Consensus 386 n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l 460 (606)
T 3vq2_A 386 NGAIIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSF 460 (606)
T ss_dssp CSEEEECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEE
T ss_pred CccccchhhccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcC
Confidence 53 23333222111 111 3455677777777777765555666677777888888877765
No 21
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.94 E-value=7.5e-27 Score=272.98 Aligned_cols=151 Identities=19% Similarity=0.121 Sum_probs=116.8
Q ss_pred CCCCCCCeEEEeeecCCCCCCCchhccCCCCEEEEecCCCCCc--CC-CCCCCCccceeecccccCceEeCcc-cccCCC
Q 002308 754 QPPLNLKELEIHYYGGNTVFPSWMASLTNLKSLDLCFCENCEQ--LP-PLGKLPSLEQLFISYMSSVKRVGDE-FLGVES 829 (938)
Q Consensus 754 ~~~~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~--l~-~l~~l~~L~~L~L~~~~~l~~~~~~-~~~~~~ 829 (938)
..+++|+.|++++|.+.+.+|.++..+++|+.|+|++|.+... +| .++.+++|+.|++++|.....+|.. +.....
T Consensus 350 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~ 429 (562)
T 3a79_B 350 PSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAES 429 (562)
T ss_dssp SSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTT
T ss_pred cCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCccc
Confidence 5678999999999999887888888999999999999976642 22 3889999999999999843336655 445677
Q ss_pred CCCCCCCCCcccc----cC-CccceeeccccccccccccccccccccccccccccceecccccccccCCCCC-CCCCCCc
Q 002308 830 DRHDSSSSSSVII----AF-PKLKSLSIFEMEELEEWDYGITRTGNTFINIMPRLSSLTINYCSKLKALPDH-IHQTTTL 903 (938)
Q Consensus 830 l~~~~~~~~~~~~----~~-~~L~~L~l~~~~~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~-l~~l~~L 903 (938)
++.++++.|.+.. .+ ++|+.|+++++ +++.++.. +..+++|+.|++++| .++.+|.. +..+++|
T Consensus 430 L~~L~l~~n~l~~~~~~~l~~~L~~L~L~~N-~l~~ip~~--------~~~l~~L~~L~L~~N-~l~~l~~~~~~~l~~L 499 (562)
T 3a79_B 430 ILVLNLSSNMLTGSVFRCLPPKVKVLDLHNN-RIMSIPKD--------VTHLQALQELNVASN-QLKSVPDGVFDRLTSL 499 (562)
T ss_dssp CCEEECCSSCCCGGGGSSCCTTCSEEECCSS-CCCCCCTT--------TTSSCCCSEEECCSS-CCCCCCTTSTTTCTTC
T ss_pred CCEEECCCCCCCcchhhhhcCcCCEEECCCC-cCcccChh--------hcCCCCCCEEECCCC-CCCCCCHHHHhcCCCC
Confidence 7888888776532 23 58899998886 45544432 227899999999996 57789887 8889999
Q ss_pred CEEEEecCcch
Q 002308 904 KELRIGECDLL 914 (938)
Q Consensus 904 ~~L~l~~c~~l 914 (938)
+.|++++||..
T Consensus 500 ~~L~l~~N~~~ 510 (562)
T 3a79_B 500 QYIWLHDNPWD 510 (562)
T ss_dssp CCEECCSCCBC
T ss_pred CEEEecCCCcC
Confidence 99999998863
No 22
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.94 E-value=3.8e-27 Score=277.01 Aligned_cols=383 Identities=19% Similarity=0.107 Sum_probs=233.2
Q ss_pred ccccceEEEEccCCCcC-cccccccCceeEEeccCCCCCCCCchhhHHHHHhccCCCeeEEecCCCCCCcccCccccccC
Q 002308 514 DEKVRHLMLIMGKESTF-PISTCRAKRIRSLLIEWPEFGHSSLNGEILEELFRESTSLRALDFPSFYLPLEIPRNIEKLV 592 (938)
Q Consensus 514 ~~~~r~l~l~~~~~~~~-~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~n~~~~~lp~~~~~l~ 592 (938)
...++++++++|.+... +..+..+++|++|.+++|.+ ..+++..|..+++|++|++++|.+....+..+++++
T Consensus 51 l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l------~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~ 124 (570)
T 2z63_A 51 FPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPI------QSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLK 124 (570)
T ss_dssp CSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCC------CEECTTTTTTCTTCCEEECTTSCCCCSTTCSCTTCT
T ss_pred CCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcC------CccCHhhhcCccccccccccccccccCCCccccccc
Confidence 36799999999988875 45688899999999998875 233445688899999999999984443334689999
Q ss_pred CCCeeeecCCcccc--ccccccCCCCccEEEcCCCCCcccccccccccCcc----ceeecCCCcccccCCccCCCCCCCc
Q 002308 593 HLRYLNLSDQKIKK--LPETLCELYNLEKLDISGCSDLRELPKGIGKLINM----KHLLNSGTRSLRYMPVGIGRLTGLR 666 (938)
Q Consensus 593 ~L~~L~L~~~~i~~--lp~~i~~l~~L~~L~l~~~~~l~~lp~~i~~l~~L----~~L~l~~~~~~~~~p~~l~~l~~L~ 666 (938)
+|++|++++|.+.. +|..++++++|++|++++|......|..+..+++| ++|++++|......|..+..+ +|+
T Consensus 125 ~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~~~~~L~l~~n~l~~~~~~~~~~~-~L~ 203 (570)
T 2z63_A 125 TLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEI-RLH 203 (570)
T ss_dssp TCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGGGGHHHHTCTTCCCEEECTTCCCCEECTTTTTTC-EEE
T ss_pred cccEEecCCCccceecChhhhcccCCCCEEeCcCCccceecHHHccchhccchhhhhcccCCCCceecCHHHhccC-cce
Confidence 99999999999885 78999999999999999998555556677777777 778888775544333333322 344
Q ss_pred ccCeeEecCCC------------------------------------------------------CCCCCcccccccccc
Q 002308 667 TLGEFHVSAGG------------------------------------------------------GVDGSKACRLESLKN 692 (938)
Q Consensus 667 ~L~l~~~~~~~------------------------------------------------------~~~~~~~~~l~~l~~ 692 (938)
.|++.+|.... .........+..+++
T Consensus 204 ~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~~l~~ 283 (570)
T 2z63_A 204 KLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTN 283 (570)
T ss_dssp EEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGGGGSEEEEEEEEETTEEESCSTTTTGGGTT
T ss_pred eEecccccccccchhhhhcCccccceeeeccccccCchhhhhcchhhhccccccchhhhhhhcchhhhhhchhhhcCcCc
Confidence 44443321000 000001112334445
Q ss_pred cccCcceeecCcCCCCChhhh------------hhhhccCCCcCCceEEEEecCCCCCCCC-----------Cc--cchH
Q 002308 693 LEHLQVCCIRRLGDVSDVGEA------------KLLELDKKKYLSRLRLEFDKKGGGGGRR-----------KN--EDDQ 747 (938)
Q Consensus 693 L~~L~l~~~~~~~~~~~~~~~------------~~~~l~~~~~L~~L~L~~~~~~~~~~~~-----------~~--~~~~ 747 (938)
|+.|++.++............ .......+++|+.|++++|......... .. ....
T Consensus 284 L~~L~l~~~~l~~l~~~~~~~~L~~L~l~~n~~~~l~~~~l~~L~~L~l~~n~~~~~~~~~~~~~L~~L~l~~n~l~~~~ 363 (570)
T 2z63_A 284 VSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKG 363 (570)
T ss_dssp CSEEEEESCEECSCCBCCSCCCCSEEEEESCBCSSCCBCBCSSCCEEEEESCBSCCBCCCCBCTTCCEEECCSSCCBEEE
T ss_pred ccEEEecCccchhhhhhhccCCccEEeeccCcccccCcccccccCEEeCcCCccccccccccCCCCCEEeCcCCccCccc
Confidence 555554444332211100000 0000012333444444433322100000 00 0000
Q ss_pred HHHhhCCCCCCCCeEEEeeecCCCCCCCchhccCCCCEEEEecCCCCCcCC--CCCCCCccceeecccccCceEeCcccc
Q 002308 748 LLLEALQPPLNLKELEIHYYGGNTVFPSWMASLTNLKSLDLCFCENCEQLP--PLGKLPSLEQLFISYMSSVKRVGDEFL 825 (938)
Q Consensus 748 ~~~~~l~~~~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~l~--~l~~l~~L~~L~L~~~~~l~~~~~~~~ 825 (938)
..+..+..+++|+.|++++|.+.. +|..+..+++|+.|++++|.+....+ .+..+++|+.|++++|......+..+.
T Consensus 364 ~~~~~~~~~~~L~~L~l~~n~l~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~ 442 (570)
T 2z63_A 364 CCSQSDFGTTSLKYLDLSFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFN 442 (570)
T ss_dssp EEEHHHHTCSCCCEEECCSCSEEE-EEEEEETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCTTTTT
T ss_pred cccccccccCccCEEECCCCcccc-ccccccccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCcccccchhhhh
Confidence 002233455667777777776666 45456677777777777776655544 377788888888888874444455555
Q ss_pred cCCCCCCCCCCCCccc--------ccCCccceeeccccccccccccccccccccccccccccceecccccccccCCC-CC
Q 002308 826 GVESDRHDSSSSSSVI--------IAFPKLKSLSIFEMEELEEWDYGITRTGNTFINIMPRLSSLTINYCSKLKALP-DH 896 (938)
Q Consensus 826 ~~~~l~~~~~~~~~~~--------~~~~~L~~L~l~~~~~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~lp-~~ 896 (938)
....++.++++.|... ..+++|+.|+++++. ++.+ .+..+..+++|+.|++++|. ++.+| ..
T Consensus 443 ~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~-l~~~-------~~~~~~~l~~L~~L~l~~n~-l~~~~~~~ 513 (570)
T 2z63_A 443 GLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQ-LEQL-------SPTAFNSLSSLQVLNMASNQ-LKSVPDGI 513 (570)
T ss_dssp TCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSC-CCEE-------CTTTTTTCTTCCEEECCSSC-CSCCCTTT
T ss_pred cCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCc-cccC-------ChhhhhcccCCCEEeCCCCc-CCCCCHHH
Confidence 6666777777666542 245677777777653 2222 22335578899999999874 55554 45
Q ss_pred CCCCCCcCEEEEecCcc
Q 002308 897 IHQTTTLKELRIGECDL 913 (938)
Q Consensus 897 l~~l~~L~~L~l~~c~~ 913 (938)
+.++++|++|++++|+.
T Consensus 514 ~~~l~~L~~L~l~~N~~ 530 (570)
T 2z63_A 514 FDRLTSLQKIWLHTNPW 530 (570)
T ss_dssp TTTCTTCCEEECCSSCB
T ss_pred hhcccCCcEEEecCCcc
Confidence 77889999999998875
No 23
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.94 E-value=1.3e-26 Score=264.07 Aligned_cols=338 Identities=16% Similarity=0.193 Sum_probs=189.5
Q ss_pred cccceEEEEccCCCcCcccccccCceeEEeccCCCCCCCCchhhHHHHHhccCCCeeEEecCCCCCCcccCccccccCCC
Q 002308 515 EKVRHLMLIMGKESTFPISTCRAKRIRSLLIEWPEFGHSSLNGEILEELFRESTSLRALDFPSFYLPLEIPRNIEKLVHL 594 (938)
Q Consensus 515 ~~~r~l~l~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~n~~~~~lp~~~~~l~~L 594 (938)
..++.+.+.++.+..++ .+..+++|+.|++++|.+.. +++ +..+++|++|++++|.+. .++. ++++++|
T Consensus 46 ~~l~~L~l~~~~i~~l~-~~~~l~~L~~L~Ls~n~l~~------~~~--~~~l~~L~~L~l~~n~l~-~~~~-~~~l~~L 114 (466)
T 1o6v_A 46 DQVTTLQADRLGIKSID-GVEYLNNLTQINFSNNQLTD------ITP--LKNLTKLVDILMNNNQIA-DITP-LANLTNL 114 (466)
T ss_dssp HTCCEEECCSSCCCCCT-TGGGCTTCCEEECCSSCCCC------CGG--GTTCTTCCEEECCSSCCC-CCGG-GTTCTTC
T ss_pred ccccEEecCCCCCccCc-chhhhcCCCEEECCCCccCC------chh--hhccccCCEEECCCCccc-cChh-hcCCCCC
Confidence 45666666666655444 35566666666666665421 122 556666666666666633 3333 6666666
Q ss_pred CeeeecCCccccccccccCCCCccEEEcCCCCCcccccccccccCccceeecCCCcccccCCccCCCCCCCcccCeeEec
Q 002308 595 RYLNLSDQKIKKLPETLCELYNLEKLDISGCSDLRELPKGIGKLINMKHLLNSGTRSLRYMPVGIGRLTGLRTLGEFHVS 674 (938)
Q Consensus 595 ~~L~L~~~~i~~lp~~i~~l~~L~~L~l~~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~ 674 (938)
++|++++|.++.+|. +.++++|++|++++|. +..+|. +..+++|++|+++++ . ..++ .++++++|+.|++++|.
T Consensus 115 ~~L~L~~n~l~~~~~-~~~l~~L~~L~l~~n~-l~~~~~-~~~l~~L~~L~l~~~-~-~~~~-~~~~l~~L~~L~l~~n~ 188 (466)
T 1o6v_A 115 TGLTLFNNQITDIDP-LKNLTNLNRLELSSNT-ISDISA-LSGLTSLQQLSFGNQ-V-TDLK-PLANLTTLERLDISSNK 188 (466)
T ss_dssp CEEECCSSCCCCCGG-GTTCTTCSEEEEEEEE-ECCCGG-GTTCTTCSEEEEEES-C-CCCG-GGTTCTTCCEEECCSSC
T ss_pred CEEECCCCCCCCChH-HcCCCCCCEEECCCCc-cCCChh-hccCCcccEeecCCc-c-cCch-hhccCCCCCEEECcCCc
Confidence 666666666666654 6666666666666665 444443 566666666666422 2 1222 25556666666666555
Q ss_pred CCCCCCCCcccccccccccccCcceeecCcCCCCChhhhhhhhccCCCcCCceEEEEecCCCCCCCCCccchHHHHhhCC
Q 002308 675 AGGGVDGSKACRLESLKNLEHLQVCCIRRLGDVSDVGEAKLLELDKKKYLSRLRLEFDKKGGGGGRRKNEDDQLLLEALQ 754 (938)
Q Consensus 675 ~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~ 754 (938)
+.. ...+..+++|+.|++.+|...... .+..+++|+.|++++|.+.. ...+.
T Consensus 189 l~~------~~~l~~l~~L~~L~l~~n~l~~~~---------~~~~l~~L~~L~l~~n~l~~-------------~~~l~ 240 (466)
T 1o6v_A 189 VSD------ISVLAKLTNLESLIATNNQISDIT---------PLGILTNLDELSLNGNQLKD-------------IGTLA 240 (466)
T ss_dssp CCC------CGGGGGCTTCSEEECCSSCCCCCG---------GGGGCTTCCEEECCSSCCCC-------------CGGGG
T ss_pred CCC------ChhhccCCCCCEEEecCCcccccc---------cccccCCCCEEECCCCCccc-------------chhhh
Confidence 443 122455555666665555443221 13344555555555555443 12334
Q ss_pred CCCCCCeEEEeeecCCCCCCCchhccCCCCEEEEecCCCCCcCCCCCCCCccceeecccccCceEeCcccccCCCCCCCC
Q 002308 755 PPLNLKELEIHYYGGNTVFPSWMASLTNLKSLDLCFCENCEQLPPLGKLPSLEQLFISYMSSVKRVGDEFLGVESDRHDS 834 (938)
Q Consensus 755 ~~~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~l~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~l~~~~ 834 (938)
.+++|+.|++++|.+.+ ++. +..+++|+.|++++|.+... +.++.+++|+.|++++|. +..++. +.....++.++
T Consensus 241 ~l~~L~~L~l~~n~l~~-~~~-~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~L~~n~-l~~~~~-~~~l~~L~~L~ 315 (466)
T 1o6v_A 241 SLTNLTDLDLANNQISN-LAP-LSGLTKLTELKLGANQISNI-SPLAGLTALTNLELNENQ-LEDISP-ISNLKNLTYLT 315 (466)
T ss_dssp GCTTCSEEECCSSCCCC-CGG-GTTCTTCSEEECCSSCCCCC-GGGTTCTTCSEEECCSSC-CSCCGG-GGGCTTCSEEE
T ss_pred cCCCCCEEECCCCcccc-chh-hhcCCCCCEEECCCCccCcc-ccccCCCccCeEEcCCCc-ccCchh-hcCCCCCCEEE
Confidence 45555555555555554 332 44555555555555544332 225555555555555554 333322 23334444444
Q ss_pred CCCCcc-----cccCCccceeeccccccccccccccccccccccccccccceecccccccccCCCCCCCCCCCcCEEEEe
Q 002308 835 SSSSSV-----IIAFPKLKSLSIFEMEELEEWDYGITRTGNTFINIMPRLSSLTINYCSKLKALPDHIHQTTTLKELRIG 909 (938)
Q Consensus 835 ~~~~~~-----~~~~~~L~~L~l~~~~~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~ 909 (938)
++.|.. ...+++|+.|++.++. +..+. .+..+++|+.|++++|+. ..++. +..+++|+.|+++
T Consensus 316 L~~n~l~~~~~~~~l~~L~~L~l~~n~-l~~~~---------~l~~l~~L~~L~l~~n~l-~~~~~-~~~l~~L~~L~l~ 383 (466)
T 1o6v_A 316 LYFNNISDISPVSSLTKLQRLFFYNNK-VSDVS---------SLANLTNINWLSAGHNQI-SDLTP-LANLTRITQLGLN 383 (466)
T ss_dssp CCSSCCSCCGGGGGCTTCCEEECCSSC-CCCCG---------GGTTCTTCCEEECCSSCC-CBCGG-GTTCTTCCEEECC
T ss_pred CcCCcCCCchhhccCccCCEeECCCCc-cCCch---------hhccCCCCCEEeCCCCcc-Cccch-hhcCCCCCEEecc
Confidence 444432 2357888888888763 43331 245789999999999764 44443 7889999999999
Q ss_pred cCcch
Q 002308 910 ECDLL 914 (938)
Q Consensus 910 ~c~~l 914 (938)
+|+..
T Consensus 384 ~n~~~ 388 (466)
T 1o6v_A 384 DQAWT 388 (466)
T ss_dssp CEEEE
T ss_pred CCccc
Confidence 99864
No 24
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.94 E-value=1.7e-26 Score=256.97 Aligned_cols=310 Identities=17% Similarity=0.138 Sum_probs=242.7
Q ss_pred cccCceeEEeccCCCCCCCCchhhHHHHHhccCCCeeEEecCCCCCCcccCccccccCCCCeeeecCCccccccc-cccC
Q 002308 535 CRAKRIRSLLIEWPEFGHSSLNGEILEELFRESTSLRALDFPSFYLPLEIPRNIEKLVHLRYLNLSDQKIKKLPE-TLCE 613 (938)
Q Consensus 535 ~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~n~~~~~lp~~~~~l~~L~~L~L~~~~i~~lp~-~i~~ 613 (938)
..+++++.|.+.++.+ ..+++.+|..+++|++|+|++|.+....+..|+.+++|++|+|++|.++.+|. .+.+
T Consensus 42 ~~l~~l~~l~l~~~~l------~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~ 115 (390)
T 3o6n_A 42 ITLNNQKIVTFKNSTM------RKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQN 115 (390)
T ss_dssp GGGCCCSEEEEESCEE------SEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTT
T ss_pred cccCCceEEEecCCch------hhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcC
Confidence 3567888888887764 44566667889999999999998555555688899999999999999887754 5788
Q ss_pred CCCccEEEcCCCCCccccccc-ccccCccceeecCCCcccccCCccCCCCCCCcccCeeEecCCCCCCCCcccccccccc
Q 002308 614 LYNLEKLDISGCSDLRELPKG-IGKLINMKHLLNSGTRSLRYMPVGIGRLTGLRTLGEFHVSAGGGVDGSKACRLESLKN 692 (938)
Q Consensus 614 l~~L~~L~l~~~~~l~~lp~~-i~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~ 692 (938)
+++|++|++++|. +..+|.. +..+++|++|++++|......|..++.+++|++|++++|.+... .+..+++
T Consensus 116 l~~L~~L~L~~n~-l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~-------~~~~l~~ 187 (390)
T 3o6n_A 116 VPLLTVLVLERND-LSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV-------DLSLIPS 187 (390)
T ss_dssp CTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBC-------CGGGCTT
T ss_pred CCCCCEEECCCCc-cCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCcc-------ccccccc
Confidence 9999999999988 6667765 47889999999999876666666788899999999988877641 2566788
Q ss_pred cccCcceeecCcCCCCChhhhhhhhccCCCcCCceEEEEecCCCCCCCCCccchHHHHhhCCCCCCCCeEEEeeecCCCC
Q 002308 693 LEHLQVCCIRRLGDVSDVGEAKLLELDKKKYLSRLRLEFDKKGGGGGRRKNEDDQLLLEALQPPLNLKELEIHYYGGNTV 772 (938)
Q Consensus 693 L~~L~l~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~ 772 (938)
|+.|++.+|.... +....+|+.|++++|.+.. + ....+++|+.|++++|.+.+
T Consensus 188 L~~L~l~~n~l~~------------~~~~~~L~~L~l~~n~l~~------------~--~~~~~~~L~~L~l~~n~l~~- 240 (390)
T 3o6n_A 188 LFHANVSYNLLST------------LAIPIAVEELDASHNSINV------------V--RGPVNVELTILKLQHNNLTD- 240 (390)
T ss_dssp CSEEECCSSCCSE------------EECCSSCSEEECCSSCCCE------------E--ECCCCSSCCEEECCSSCCCC-
T ss_pred cceeecccccccc------------cCCCCcceEEECCCCeeee------------c--cccccccccEEECCCCCCcc-
Confidence 8888887775432 3344679999999988764 1 12335799999999999987
Q ss_pred CCCchhccCCCCEEEEecCCCCCcCCC-CCCCCccceeecccccCceEeCcccccCCCCCCCCCCCCcccccCCccceee
Q 002308 773 FPSWMASLTNLKSLDLCFCENCEQLPP-LGKLPSLEQLFISYMSSVKRVGDEFLGVESDRHDSSSSSSVIIAFPKLKSLS 851 (938)
Q Consensus 773 ~p~~~~~l~~L~~L~L~~~~~~~~l~~-l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~L~~L~ 851 (938)
. .++..+++|+.|+|++|.+.+..|. ++.+++|+.|++++|. ++.++..+ ..+|+|+.|+
T Consensus 241 ~-~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~-----------------~~l~~L~~L~ 301 (390)
T 3o6n_A 241 T-AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNR-LVALNLYG-----------------QPIPTLKVLD 301 (390)
T ss_dssp C-GGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSSC-CCEEECSS-----------------SCCTTCCEEE
T ss_pred c-HHHcCCCCccEEECCCCcCCCcChhHccccccCCEEECCCCc-CcccCccc-----------------CCCCCCCEEE
Confidence 4 6788999999999999988776665 8999999999999997 66555432 2689999999
Q ss_pred ccccccccccccccccccccccccccccceecccccccccCCCCCCCCCCCcCEEEEecCcchHH
Q 002308 852 IFEMEELEEWDYGITRTGNTFINIMPRLSSLTINYCSKLKALPDHIHQTTTLKELRIGECDLLEE 916 (938)
Q Consensus 852 l~~~~~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~~l~~ 916 (938)
++++ .+..++.. +..+++|+.|++++|+ ++.+| +..+++|++|++++|+.-.+
T Consensus 302 L~~n-~l~~~~~~--------~~~l~~L~~L~L~~N~-i~~~~--~~~~~~L~~L~l~~N~~~~~ 354 (390)
T 3o6n_A 302 LSHN-HLLHVERN--------QPQFDRLENLYLDHNS-IVTLK--LSTHHTLKNLTLSHNDWDCN 354 (390)
T ss_dssp CCSS-CCCCCGGG--------HHHHTTCSEEECCSSC-CCCCC--CCTTCCCSEEECCSSCEEHH
T ss_pred CCCC-cceecCcc--------ccccCcCCEEECCCCc-cceeC--chhhccCCEEEcCCCCccch
Confidence 9987 45444322 3478999999999975 66676 67789999999999997554
No 25
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.94 E-value=4.5e-26 Score=278.64 Aligned_cols=257 Identities=16% Similarity=0.107 Sum_probs=192.4
Q ss_pred ccccceEEEEccCCC-cC-cccccccCceeEEeccCCCCCCCCchhhHHHHHhccCCCeeEEecCCCCCCcccCcc--cc
Q 002308 514 DEKVRHLMLIMGKES-TF-PISTCRAKRIRSLLIEWPEFGHSSLNGEILEELFRESTSLRALDFPSFYLPLEIPRN--IE 589 (938)
Q Consensus 514 ~~~~r~l~l~~~~~~-~~-~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~n~~~~~lp~~--~~ 589 (938)
...++.|++++|... .+ +..+.++++|++|++++|.+ ..+.+..|..+++|++|+|++|.+.+.+|.. ++
T Consensus 47 l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l------~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~ 120 (844)
T 3j0a_A 47 LEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKI------YFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFR 120 (844)
T ss_dssp CCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCC------CEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCS
T ss_pred cccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcC------cccCHhHccCCcccCEeeCcCCCCCcccccCcccc
Confidence 477999999998543 34 67889999999999999876 2334556889999999999999977666665 89
Q ss_pred ccCCCCeeeecCCccccc--cccccCCCCccEEEcCCCCCccccccccccc--CccceeecCCCcccccCCccCCCCCC-
Q 002308 590 KLVHLRYLNLSDQKIKKL--PETLCELYNLEKLDISGCSDLRELPKGIGKL--INMKHLLNSGTRSLRYMPVGIGRLTG- 664 (938)
Q Consensus 590 ~l~~L~~L~L~~~~i~~l--p~~i~~l~~L~~L~l~~~~~l~~lp~~i~~l--~~L~~L~l~~~~~~~~~p~~l~~l~~- 664 (938)
++++|++|+|++|.+..+ +..++++++|++|++++|......|..+..+ ++|+.|++++|......|..++.+.+
T Consensus 121 ~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~ 200 (844)
T 3j0a_A 121 NLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNP 200 (844)
T ss_dssp SCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCCCEECCSBSCCCCCCCCCSSSCT
T ss_pred ccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCCccceEECCCCccccccccchhhcCCc
Confidence 999999999999999865 3579999999999999998766677777777 78888888888766666665555544
Q ss_pred -----CcccCeeEecCCCCCCCCc--------------------------------------------------------
Q 002308 665 -----LRTLGEFHVSAGGGVDGSK-------------------------------------------------------- 683 (938)
Q Consensus 665 -----L~~L~l~~~~~~~~~~~~~-------------------------------------------------------- 683 (938)
|+.|++++|.+....+...
T Consensus 201 ~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~ 280 (844)
T 3j0a_A 201 FRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFS 280 (844)
T ss_dssp TTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCE
T ss_pred cccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccccCCCChhhhhccccCCccEEECCCCcccc
Confidence 7777776664332111100
Q ss_pred --ccccccccccccCcceeecCcCCCCChhhhhhhhccCCCcCCceEEEEecCCCCCCCCCccchHHHHhhCCCCCCCCe
Q 002308 684 --ACRLESLKNLEHLQVCCIRRLGDVSDVGEAKLLELDKKKYLSRLRLEFDKKGGGGGRRKNEDDQLLLEALQPPLNLKE 761 (938)
Q Consensus 684 --~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~ 761 (938)
...+..+++|+.|++.+|.+....+. .+..+++|+.|+|++|.+... .+..+..+++|+.
T Consensus 281 ~~~~~~~~l~~L~~L~L~~n~i~~~~~~-------~~~~l~~L~~L~Ls~N~l~~~-----------~~~~~~~l~~L~~ 342 (844)
T 3j0a_A 281 LNSRVFETLKDLKVLNLAYNKINKIADE-------AFYGLDNLQVLNLSYNLLGEL-----------YSSNFYGLPKVAY 342 (844)
T ss_dssp ECSCCSSSCCCCCEEEEESCCCCEECTT-------TTTTCSSCCEEEEESCCCSCC-----------CSCSCSSCTTCCE
T ss_pred cChhhhhcCCCCCEEECCCCcCCCCChH-------HhcCCCCCCEEECCCCCCCcc-----------CHHHhcCCCCCCE
Confidence 11234455555555555554433332 577889999999999988651 2456788899999
Q ss_pred EEEeeecCCCCCCCchhccCCCCEEEEecCCCC
Q 002308 762 LEIHYYGGNTVFPSWMASLTNLKSLDLCFCENC 794 (938)
Q Consensus 762 L~l~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~ 794 (938)
|++++|.+....+..+..+++|+.|+|++|.+.
T Consensus 343 L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~ 375 (844)
T 3j0a_A 343 IDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALT 375 (844)
T ss_dssp EECCSCCCCCCCSSCSCSCCCCCEEEEETCCSC
T ss_pred EECCCCCCCccChhhhcCCCCCCEEECCCCCCC
Confidence 999999998855567889999999999999754
No 26
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.93 E-value=2.3e-26 Score=251.82 Aligned_cols=284 Identities=16% Similarity=0.197 Sum_probs=177.3
Q ss_pred hccCCCeeEEecCCCCCCcccCccccccCCCCeeeecCCccccccccccCCCCccEEEcCCCCCcccccccccccCccce
Q 002308 564 FRESTSLRALDFPSFYLPLEIPRNIEKLVHLRYLNLSDQKIKKLPETLCELYNLEKLDISGCSDLRELPKGIGKLINMKH 643 (938)
Q Consensus 564 ~~~~~~Lr~L~L~~n~~~~~lp~~~~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~l~~~~~l~~lp~~i~~l~~L~~ 643 (938)
+..+++|++|++++|. ...+|. +..+++|++|++++|.++.+| .+.++++|++|++++|. +..+|. +..+++|++
T Consensus 62 ~~~~~~L~~L~l~~n~-i~~~~~-~~~l~~L~~L~L~~n~i~~~~-~~~~l~~L~~L~l~~n~-i~~~~~-~~~l~~L~~ 136 (347)
T 4fmz_A 62 IEYLTNLEYLNLNGNQ-ITDISP-LSNLVKLTNLYIGTNKITDIS-ALQNLTNLRELYLNEDN-ISDISP-LANLTKMYS 136 (347)
T ss_dssp GGGCTTCCEEECCSSC-CCCCGG-GTTCTTCCEEECCSSCCCCCG-GGTTCTTCSEEECTTSC-CCCCGG-GTTCTTCCE
T ss_pred hhhcCCccEEEccCCc-cccchh-hhcCCcCCEEEccCCcccCch-HHcCCCcCCEEECcCCc-ccCchh-hccCCceeE
Confidence 4445555566665555 333333 555555666666655555543 35555566666665555 333443 555555666
Q ss_pred eecCCCcccccCCccCCCCCCCcccCeeEecCCCCCCCCcccccccccccccCcceeecCcCCCCChhhhhhhhccCCCc
Q 002308 644 LLNSGTRSLRYMPVGIGRLTGLRTLGEFHVSAGGGVDGSKACRLESLKNLEHLQVCCIRRLGDVSDVGEAKLLELDKKKY 723 (938)
Q Consensus 644 L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~~~~ 723 (938)
|++++|.....++ .+..+++|+.|++.+|.... ...+..+++|+.|++.+|...... .+..+++
T Consensus 137 L~l~~n~~~~~~~-~~~~l~~L~~L~l~~~~~~~------~~~~~~l~~L~~L~l~~n~l~~~~---------~~~~l~~ 200 (347)
T 4fmz_A 137 LNLGANHNLSDLS-PLSNMTGLNYLTVTESKVKD------VTPIANLTDLYSLSLNYNQIEDIS---------PLASLTS 200 (347)
T ss_dssp EECTTCTTCCCCG-GGTTCTTCCEEECCSSCCCC------CGGGGGCTTCSEEECTTSCCCCCG---------GGGGCTT
T ss_pred EECCCCCCccccc-chhhCCCCcEEEecCCCcCC------chhhccCCCCCEEEccCCcccccc---------cccCCCc
Confidence 6665554333332 25555556655555554443 111455566666666555433211 1455667
Q ss_pred CCceEEEEecCCCCCCCCCccchHHHHhhCCCCCCCCeEEEeeecCCCCCCCchhccCCCCEEEEecCCCCCcCCCCCCC
Q 002308 724 LSRLRLEFDKKGGGGGRRKNEDDQLLLEALQPPLNLKELEIHYYGGNTVFPSWMASLTNLKSLDLCFCENCEQLPPLGKL 803 (938)
Q Consensus 724 L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~l~~l~~l 803 (938)
|+.|++++|.+.. . ..+..+++|++|++++|.+.. +|. +..+++|+.|++++|.+.. ++.+..+
T Consensus 201 L~~L~l~~n~l~~------------~-~~~~~~~~L~~L~l~~n~l~~-~~~-~~~l~~L~~L~l~~n~l~~-~~~~~~l 264 (347)
T 4fmz_A 201 LHYFTAYVNQITD------------I-TPVANMTRLNSLKIGNNKITD-LSP-LANLSQLTWLEIGTNQISD-INAVKDL 264 (347)
T ss_dssp CCEEECCSSCCCC------------C-GGGGGCTTCCEEECCSSCCCC-CGG-GTTCTTCCEEECCSSCCCC-CGGGTTC
T ss_pred cceeecccCCCCC------------C-chhhcCCcCCEEEccCCccCC-Ccc-hhcCCCCCEEECCCCccCC-ChhHhcC
Confidence 7777777776654 1 125667888888888888887 555 7788899999999886554 4668888
Q ss_pred CccceeecccccCceEeCcccccCCCCCCCCCCCCcccccCCccceeeccccccccccccccccccccccccccccceec
Q 002308 804 PSLEQLFISYMSSVKRVGDEFLGVESDRHDSSSSSSVIIAFPKLKSLSIFEMEELEEWDYGITRTGNTFINIMPRLSSLT 883 (938)
Q Consensus 804 ~~L~~L~L~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~~~~~~~~~~~~~~~~l~~L~~L~ 883 (938)
++|+.|++++|. +..++. ...+++|+.|++.++. +... .+..++.+++|+.|+
T Consensus 265 ~~L~~L~l~~n~-l~~~~~------------------~~~l~~L~~L~L~~n~-l~~~-------~~~~l~~l~~L~~L~ 317 (347)
T 4fmz_A 265 TKLKMLNVGSNQ-ISDISV------------------LNNLSQLNSLFLNNNQ-LGNE-------DMEVIGGLTNLTTLF 317 (347)
T ss_dssp TTCCEEECCSSC-CCCCGG------------------GGGCTTCSEEECCSSC-CCGG-------GHHHHHTCTTCSEEE
T ss_pred CCcCEEEccCCc-cCCChh------------------hcCCCCCCEEECcCCc-CCCc-------ChhHhhccccCCEEE
Confidence 999999998886 444321 2367889999888874 3222 122345789999999
Q ss_pred ccccccccCCCCCCCCCCCcCEEEEecCcc
Q 002308 884 INYCSKLKALPDHIHQTTTLKELRIGECDL 913 (938)
Q Consensus 884 l~~c~~l~~lp~~l~~l~~L~~L~l~~c~~ 913 (938)
+++|+ ++.++. +..+++|++|++++|+.
T Consensus 318 L~~n~-l~~~~~-~~~l~~L~~L~l~~N~i 345 (347)
T 4fmz_A 318 LSQNH-ITDIRP-LASLSKMDSADFANQVI 345 (347)
T ss_dssp CCSSS-CCCCGG-GGGCTTCSEESSSCC--
T ss_pred ccCCc-cccccC-hhhhhccceeehhhhcc
Confidence 99976 566655 77899999999999985
No 27
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.93 E-value=5.4e-27 Score=274.16 Aligned_cols=370 Identities=20% Similarity=0.163 Sum_probs=256.3
Q ss_pred EEEEccCCCcCcccccccCceeEEeccCCCCCCCCchhhHHHHHhccCCCeeEEecCCCCCCcccCccccccCCCCeeee
Q 002308 520 LMLIMGKESTFPISTCRAKRIRSLLIEWPEFGHSSLNGEILEELFRESTSLRALDFPSFYLPLEIPRNIEKLVHLRYLNL 599 (938)
Q Consensus 520 l~l~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~n~~~~~lp~~~~~l~~L~~L~L 599 (938)
.+...+.++.+|..+. ++|++|++++|.+. .+++..|..+++|++|+|++|.+....|..|+.+++|++|+|
T Consensus 10 c~~~~~~l~~ip~~~~--~~L~~L~Ls~n~l~------~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L 81 (549)
T 2z81_A 10 CDGRSRSFTSIPSGLT--AAMKSLDLSFNKIT------YIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDL 81 (549)
T ss_dssp EECTTSCCSSCCSCCC--TTCCEEECCSSCCC------EECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEC
T ss_pred EECCCCccccccccCC--CCccEEECcCCccC------ccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEEC
Confidence 4555667777777654 79999999999863 233445889999999999999977667788999999999999
Q ss_pred cCCcccccccc-ccCCCCccEEEcCCCCCcc-cccccccccCccceeecCCCcccccCC-ccCCCCCCCcccCeeEecCC
Q 002308 600 SDQKIKKLPET-LCELYNLEKLDISGCSDLR-ELPKGIGKLINMKHLLNSGTRSLRYMP-VGIGRLTGLRTLGEFHVSAG 676 (938)
Q Consensus 600 ~~~~i~~lp~~-i~~l~~L~~L~l~~~~~l~-~lp~~i~~l~~L~~L~l~~~~~~~~~p-~~l~~l~~L~~L~l~~~~~~ 676 (938)
++|.++.+|.. ++++++|++|++++|.... ..|..+..+++|++|++++|.....+| ..++++++|+.|++.+|.+.
T Consensus 82 s~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~ 161 (549)
T 2z81_A 82 SDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLR 161 (549)
T ss_dssp TTSCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCC
T ss_pred CCCccCccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCccc
Confidence 99999988765 9999999999999998443 457789999999999999997566665 57999999999999999887
Q ss_pred CCCCCCcccccccccccccCcceeecCcCCCCChhhhhhhhccCCCcCCceEEEEecCCCCCCCCC--------------
Q 002308 677 GGVDGSKACRLESLKNLEHLQVCCIRRLGDVSDVGEAKLLELDKKKYLSRLRLEFDKKGGGGGRRK-------------- 742 (938)
Q Consensus 677 ~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~-------------- 742 (938)
...+. .+..+++|+.|++..+..... .. ..+..+++|+.|++++|.+.+......
T Consensus 162 ~~~~~----~l~~l~~L~~L~l~~n~~~~~----~~---~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l 230 (549)
T 2z81_A 162 NYQSQ----SLKSIRDIHHLTLHLSESAFL----LE---IFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAF 230 (549)
T ss_dssp EECTT----TTTTCSEEEEEEEECSBSTTH----HH---HHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEE
T ss_pred ccChh----hhhccccCceEecccCccccc----ch---hhHhhcccccEEEccCCccccccccccchhhhhhcccceec
Confidence 64333 377788899998877754211 11 123456778888888777654210000
Q ss_pred --c----cchHHHHhhC-----------------------------------------------------------CCCC
Q 002308 743 --N----EDDQLLLEAL-----------------------------------------------------------QPPL 757 (938)
Q Consensus 743 --~----~~~~~~~~~l-----------------------------------------------------------~~~~ 757 (938)
. .....+...+ ...+
T Consensus 231 ~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~ 310 (549)
T 2z81_A 231 RGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLE 310 (549)
T ss_dssp ESCEEEHHHHHHHHGGGGGCTTCCEEEEESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHST
T ss_pred cccccchhHHHHHHHHhhhhccccccccccccccccccccccchhhhhhhcccccccccccccchhhhcccchhhhhhcc
Confidence 0 0000111100 0123
Q ss_pred CCCeEEEeeecCCCCCCCch-hccCCCCEEEEecCCCCCcCC----CCCCCCccceeecccccCceEeC---cccccCCC
Q 002308 758 NLKELEIHYYGGNTVFPSWM-ASLTNLKSLDLCFCENCEQLP----PLGKLPSLEQLFISYMSSVKRVG---DEFLGVES 829 (938)
Q Consensus 758 ~L~~L~l~~~~~~~~~p~~~-~~l~~L~~L~L~~~~~~~~l~----~l~~l~~L~~L~L~~~~~l~~~~---~~~~~~~~ 829 (938)
+|+.|++++|.+.. +|.++ ..+++|+.|+|++|.+.+..| .++.+++|+.|++++|. ++.++ ..+.....
T Consensus 311 ~L~~L~l~~n~l~~-ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~~~l~~ 388 (549)
T 2z81_A 311 KVKRITVENSKVFL-VPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNH-LRSMQKTGEILLTLKN 388 (549)
T ss_dssp TCCEEEEESSCCCC-CCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSC-CCCHHHHHHHGGGCTT
T ss_pred cceEEEeccCcccc-CCHHHHhcCccccEEEccCCccccccccchhhhhccccCcEEEccCCc-ccccccchhhhhcCCC
Confidence 56777777777665 77666 468888888888887765432 26777888888888876 44443 23445566
Q ss_pred CCCCCCCCCccc------ccCCccceeeccccc----------cccccccccccccccccccccccceecccccccccCC
Q 002308 830 DRHDSSSSSSVI------IAFPKLKSLSIFEME----------ELEEWDYGITRTGNTFINIMPRLSSLTINYCSKLKAL 893 (938)
Q Consensus 830 l~~~~~~~~~~~------~~~~~L~~L~l~~~~----------~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l 893 (938)
++.++++.|.+. ..+++|++|+++++. +|+.+..+.+. ...+...+++|++|+|++| .++.+
T Consensus 389 L~~L~Ls~N~l~~lp~~~~~~~~L~~L~Ls~N~l~~l~~~~~~~L~~L~Ls~N~-l~~~~~~l~~L~~L~Ls~N-~l~~i 466 (549)
T 2z81_A 389 LTSLDISRNTFHPMPDSCQWPEKMRFLNLSSTGIRVVKTCIPQTLEVLDVSNNN-LDSFSLFLPRLQELYISRN-KLKTL 466 (549)
T ss_dssp CCEEECTTCCCCCCCSCCCCCTTCCEEECTTSCCSCCCTTSCTTCSEEECCSSC-CSCCCCCCTTCCEEECCSS-CCSSC
T ss_pred CCEEECCCCCCccCChhhcccccccEEECCCCCcccccchhcCCceEEECCCCC-hhhhcccCChhcEEECCCC-ccCcC
Confidence 666776666542 234567777776653 22222221111 1122347899999999986 56788
Q ss_pred CCCCCCCCCcCEEEEecCcc
Q 002308 894 PDHIHQTTTLKELRIGECDL 913 (938)
Q Consensus 894 p~~l~~l~~L~~L~l~~c~~ 913 (938)
|. ...+++|++|++++|+.
T Consensus 467 p~-~~~l~~L~~L~Ls~N~l 485 (549)
T 2z81_A 467 PD-ASLFPVLLVMKISRNQL 485 (549)
T ss_dssp CC-GGGCTTCCEEECCSSCC
T ss_pred CC-cccCccCCEEecCCCcc
Confidence 87 45789999999999975
No 28
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.93 E-value=9.3e-26 Score=257.02 Aligned_cols=351 Identities=16% Similarity=0.126 Sum_probs=260.8
Q ss_pred cceEEEEccCCCcCcccccccCceeEEeccCCCCCCCCchhhHHHHHhccCCCeeEEecCCCCCCccc-CccccccCCCC
Q 002308 517 VRHLMLIMGKESTFPISTCRAKRIRSLLIEWPEFGHSSLNGEILEELFRESTSLRALDFPSFYLPLEI-PRNIEKLVHLR 595 (938)
Q Consensus 517 ~r~l~l~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~n~~~~~l-p~~~~~l~~L~ 595 (938)
.+.+...++.++.+|. + .++|+.|++++|.+. .+.+..|..+++|++|+|++|.+.+.+ |..|+.+++|+
T Consensus 12 ~~~~~c~~~~l~~lp~-l--~~~l~~L~Ls~n~i~------~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~ 82 (455)
T 3v47_A 12 GYNAICINRGLHQVPE-L--PAHVNYVDLSLNSIA------ELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLI 82 (455)
T ss_dssp TTEEECCSSCCSSCCC-C--CTTCCEEECCSSCCC------EECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCC
T ss_pred ccccCcCCCCcccCCC-C--CCccCEEEecCCccC------cCChhHhccCccccEEECcCCcccceECcccccccccCC
Confidence 3456666677776776 2 378999999998762 334455889999999999999965555 56799999999
Q ss_pred eeeecCCccccc-cccccCCCCccEEEcCCCCCccccccc--ccccCccceeecCCCcccccCCcc-CCCCCCCcccCee
Q 002308 596 YLNLSDQKIKKL-PETLCELYNLEKLDISGCSDLRELPKG--IGKLINMKHLLNSGTRSLRYMPVG-IGRLTGLRTLGEF 671 (938)
Q Consensus 596 ~L~L~~~~i~~l-p~~i~~l~~L~~L~l~~~~~l~~lp~~--i~~l~~L~~L~l~~~~~~~~~p~~-l~~l~~L~~L~l~ 671 (938)
+|+|++|.++.+ |..++++++|++|++++|......|.. +..+++|++|++++|......|.. ++++++|++|+++
T Consensus 83 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~ 162 (455)
T 3v47_A 83 ILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLT 162 (455)
T ss_dssp EEECTTCTTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECT
T ss_pred EEeCCCCccCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCC
Confidence 999999999866 778999999999999999965555655 889999999999999777666766 8899999999999
Q ss_pred EecCCCCCCCCcccccccc--cccccCcceeecCcCCCCCh-hhhhhhhccCCCcCCceEEEEecCCCCCCCCCccchHH
Q 002308 672 HVSAGGGVDGSKACRLESL--KNLEHLQVCCIRRLGDVSDV-GEAKLLELDKKKYLSRLRLEFDKKGGGGGRRKNEDDQL 748 (938)
Q Consensus 672 ~~~~~~~~~~~~~~~l~~l--~~L~~L~l~~~~~~~~~~~~-~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~ 748 (938)
+|.+....+.. +..+ .+|+.|++.+|......... .......+..+++|+.|++++|.+.. . ...
T Consensus 163 ~n~l~~~~~~~----l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~-------~-~~~ 230 (455)
T 3v47_A 163 FNKVKSICEED----LLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKE-------S-MAK 230 (455)
T ss_dssp TCCBSCCCTTT----SGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCH-------H-HHH
T ss_pred CCcccccChhh----hhccccccccccccccCcccccchhhccccccccccccceeeeEecCCCcccc-------c-chh
Confidence 99887644333 3333 57888888887765543321 11112234466889999999998753 1 111
Q ss_pred HHhhCCCCCCCCeEEEeeecCCCC----------CCCchh--ccCCCCEEEEecCCCCCcCCC-CCCCCccceeeccccc
Q 002308 749 LLEALQPPLNLKELEIHYYGGNTV----------FPSWMA--SLTNLKSLDLCFCENCEQLPP-LGKLPSLEQLFISYMS 815 (938)
Q Consensus 749 ~~~~l~~~~~L~~L~l~~~~~~~~----------~p~~~~--~l~~L~~L~L~~~~~~~~l~~-l~~l~~L~~L~L~~~~ 815 (938)
........++|+.|++++|..... .+..+. ..++|+.|+|++|.+....|. ++.+++|+.|++++|.
T Consensus 231 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~ 310 (455)
T 3v47_A 231 RFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNE 310 (455)
T ss_dssp HHHHHTTTCCEEEEECTTCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSC
T ss_pred hhhccccccceeeEeeccccccccccchhhhccCcccccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCc
Confidence 122223357999999998865431 111122 347899999999998887776 9999999999999998
Q ss_pred CceEeCcccccCCCCCCCCCCCCcccccCCccceeeccccccccccccccccccccccccccccceecccccccccCCCC
Q 002308 816 SVKRVGDEFLGVESDRHDSSSSSSVIIAFPKLKSLSIFEMEELEEWDYGITRTGNTFINIMPRLSSLTINYCSKLKALPD 895 (938)
Q Consensus 816 ~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~lp~ 895 (938)
+..++...+ ..+++|+.|+++++. +..+. +..+..+++|++|+|++|......|.
T Consensus 311 -l~~~~~~~~----------------~~l~~L~~L~Ls~N~-l~~~~-------~~~~~~l~~L~~L~Ls~N~l~~~~~~ 365 (455)
T 3v47_A 311 -INKIDDNAF----------------WGLTHLLKLNLSQNF-LGSID-------SRMFENLDKLEVLDLSYNHIRALGDQ 365 (455)
T ss_dssp -CCEECTTTT----------------TTCTTCCEEECCSSC-CCEEC-------GGGGTTCTTCCEEECCSSCCCEECTT
T ss_pred -ccccChhHh----------------cCcccCCEEECCCCc-cCCcC-------hhHhcCcccCCEEECCCCcccccChh
Confidence 555443222 267899999999863 33332 23355799999999999865555578
Q ss_pred CCCCCCCcCEEEEecCcc
Q 002308 896 HIHQTTTLKELRIGECDL 913 (938)
Q Consensus 896 ~l~~l~~L~~L~l~~c~~ 913 (938)
.+..+++|++|++++|+.
T Consensus 366 ~~~~l~~L~~L~L~~N~l 383 (455)
T 3v47_A 366 SFLGLPNLKELALDTNQL 383 (455)
T ss_dssp TTTTCTTCCEEECCSSCC
T ss_pred hccccccccEEECCCCcc
Confidence 899999999999999986
No 29
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.93 E-value=5.6e-26 Score=266.83 Aligned_cols=309 Identities=17% Similarity=0.141 Sum_probs=247.9
Q ss_pred ccCceeEEeccCCCCCCCCchhhHHHHHhccCCCeeEEecCCCCCCcccCccccccCCCCeeeecCCccccccc-cccCC
Q 002308 536 RAKRIRSLLIEWPEFGHSSLNGEILEELFRESTSLRALDFPSFYLPLEIPRNIEKLVHLRYLNLSDQKIKKLPE-TLCEL 614 (938)
Q Consensus 536 ~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~n~~~~~lp~~~~~l~~L~~L~L~~~~i~~lp~-~i~~l 614 (938)
.+++++.|.+.++.+ ..+++.+|..+++|++|+|++|.+....|..|+.+++|++|+|++|.++.+|. .|+++
T Consensus 49 ~l~~l~~l~l~~~~l------~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l 122 (597)
T 3oja_B 49 TLNNQKIVTFKNSTM------RKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNV 122 (597)
T ss_dssp GGCCCSEEEESSCEE------SEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTC
T ss_pred cCCCceEEEeeCCCC------CCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCC
Confidence 567889998888765 44567778889999999999999666566789999999999999999997765 46999
Q ss_pred CCccEEEcCCCCCccccccc-ccccCccceeecCCCcccccCCccCCCCCCCcccCeeEecCCCCCCCCccccccccccc
Q 002308 615 YNLEKLDISGCSDLRELPKG-IGKLINMKHLLNSGTRSLRYMPVGIGRLTGLRTLGEFHVSAGGGVDGSKACRLESLKNL 693 (938)
Q Consensus 615 ~~L~~L~l~~~~~l~~lp~~-i~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~L 693 (938)
++|++|++++|. +..+|.. |..+++|++|++++|.+....|..++.+++|+.|++++|.+... .+..+++|
T Consensus 123 ~~L~~L~L~~n~-l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~-------~~~~l~~L 194 (597)
T 3oja_B 123 PLLTVLVLERND-LSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV-------DLSLIPSL 194 (597)
T ss_dssp TTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBC-------CGGGCTTC
T ss_pred CCCCEEEeeCCC-CCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCc-------Chhhhhhh
Confidence 999999999998 5566665 58999999999999977776777799999999999998877641 25667888
Q ss_pred ccCcceeecCcCCCCChhhhhhhhccCCCcCCceEEEEecCCCCCCCCCccchHHHHhhCCCCCCCCeEEEeeecCCCCC
Q 002308 694 EHLQVCCIRRLGDVSDVGEAKLLELDKKKYLSRLRLEFDKKGGGGGRRKNEDDQLLLEALQPPLNLKELEIHYYGGNTVF 773 (938)
Q Consensus 694 ~~L~l~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~ 773 (938)
+.|++.+|.... +....+|+.|++++|.+.. ++. ..+++|+.|++++|.+.+
T Consensus 195 ~~L~l~~n~l~~------------l~~~~~L~~L~ls~n~l~~------------~~~--~~~~~L~~L~L~~n~l~~-- 246 (597)
T 3oja_B 195 FHANVSYNLLST------------LAIPIAVEELDASHNSINV------------VRG--PVNVELTILKLQHNNLTD-- 246 (597)
T ss_dssp SEEECCSSCCSE------------EECCTTCSEEECCSSCCCE------------EEC--SCCSCCCEEECCSSCCCC--
T ss_pred hhhhcccCcccc------------ccCCchhheeeccCCcccc------------ccc--ccCCCCCEEECCCCCCCC--
Confidence 888888775532 3445679999999998764 111 224689999999999987
Q ss_pred CCchhccCCCCEEEEecCCCCCcCCC-CCCCCccceeecccccCceEeCcccccCCCCCCCCCCCCcccccCCccceeec
Q 002308 774 PSWMASLTNLKSLDLCFCENCEQLPP-LGKLPSLEQLFISYMSSVKRVGDEFLGVESDRHDSSSSSSVIIAFPKLKSLSI 852 (938)
Q Consensus 774 p~~~~~l~~L~~L~L~~~~~~~~l~~-l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~L~~L~l 852 (938)
+.++..+++|+.|+|++|.+....|. ++.+++|+.|+|++|. +..+|..+ ..+|+|+.|++
T Consensus 247 ~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~l~~~~-----------------~~l~~L~~L~L 308 (597)
T 3oja_B 247 TAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNR-LVALNLYG-----------------QPIPTLKVLDL 308 (597)
T ss_dssp CGGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSC-CCEEECSS-----------------SCCTTCCEEEC
T ss_pred ChhhccCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCCC-CCCCCccc-----------------ccCCCCcEEEC
Confidence 57889999999999999988877665 9999999999999997 55565432 26899999999
Q ss_pred cccccccccccccccccccccccccccceecccccccccCCCCCCCCCCCcCEEEEecCcchHH
Q 002308 853 FEMEELEEWDYGITRTGNTFINIMPRLSSLTINYCSKLKALPDHIHQTTTLKELRIGECDLLEE 916 (938)
Q Consensus 853 ~~~~~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~~l~~ 916 (938)
+++. +..++. .+..+++|+.|+|++|+ +..+| +..+++|+.|++++|+.-.+
T Consensus 309 s~N~-l~~i~~--------~~~~l~~L~~L~L~~N~-l~~~~--~~~~~~L~~L~l~~N~~~~~ 360 (597)
T 3oja_B 309 SHNH-LLHVER--------NQPQFDRLENLYLDHNS-IVTLK--LSTHHTLKNLTLSHNDWDCN 360 (597)
T ss_dssp CSSC-CCCCGG--------GHHHHTTCSEEECCSSC-CCCCC--CCTTCCCSEEECCSSCEEHH
T ss_pred CCCC-CCccCc--------ccccCCCCCEEECCCCC-CCCcC--hhhcCCCCEEEeeCCCCCCh
Confidence 9874 443332 23479999999999975 66665 56789999999999997544
No 30
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.93 E-value=9.9e-26 Score=258.18 Aligned_cols=265 Identities=18% Similarity=0.129 Sum_probs=127.0
Q ss_pred EEEEccCCCcCcccccccCceeEEeccCCCCCCCCchhhHHHHHhccCCCeeEEecCCCCCCcccCccccccCCCCeeee
Q 002308 520 LMLIMGKESTFPISTCRAKRIRSLLIEWPEFGHSSLNGEILEELFRESTSLRALDFPSFYLPLEIPRNIEKLVHLRYLNL 599 (938)
Q Consensus 520 l~l~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~n~~~~~lp~~~~~l~~L~~L~L 599 (938)
+...++.+..+|..+ .++++.|++++|.+. .+.+..|..+++|++|+|++|.+....|..|+++++|++|+|
T Consensus 16 v~c~~~~l~~ip~~~--~~~l~~L~L~~n~l~------~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L 87 (477)
T 2id5_A 16 VLCHRKRFVAVPEGI--PTETRLLDLGKNRIK------TLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGL 87 (477)
T ss_dssp EECCSCCCSSCCSCC--CTTCSEEECCSSCCC------EECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEC
T ss_pred EEeCCCCcCcCCCCC--CCCCcEEECCCCccc------eECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEEC
Confidence 333334444444333 134555555555431 122233555566666666666544444555556666666666
Q ss_pred cCCcccccccc-ccCCCCccEEEcCCCCCcccccccccccCccceeecCCCcccccCCccCCCCCCCcccCeeEecCCCC
Q 002308 600 SDQKIKKLPET-LCELYNLEKLDISGCSDLRELPKGIGKLINMKHLLNSGTRSLRYMPVGIGRLTGLRTLGEFHVSAGGG 678 (938)
Q Consensus 600 ~~~~i~~lp~~-i~~l~~L~~L~l~~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~~~~~ 678 (938)
++|.++.+|.. +.++++|++|++++|......|..+..+++|++|++++|......|..+..+++|+.|++.+|.+...
T Consensus 88 ~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~ 167 (477)
T 2id5_A 88 RSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSI 167 (477)
T ss_dssp CSSCCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSC
T ss_pred CCCcCCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCccc
Confidence 66665555542 45566666666666554444455555566666666665544444444555555566665555544331
Q ss_pred CCCCcccccccccccccCcceeecCcCCCCChhhhhhhhccCCCcCCceEEEEecCCCCCCCCCccchHHHHhhCCCCCC
Q 002308 679 VDGSKACRLESLKNLEHLQVCCIRRLGDVSDVGEAKLLELDKKKYLSRLRLEFDKKGGGGGRRKNEDDQLLLEALQPPLN 758 (938)
Q Consensus 679 ~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 758 (938)
. ...+..+++|+.|++.+|......+. .+..+++|+.|++++|..... ++.......+
T Consensus 168 ~----~~~l~~l~~L~~L~l~~n~i~~~~~~-------~~~~l~~L~~L~l~~~~~~~~-----------~~~~~~~~~~ 225 (477)
T 2id5_A 168 P----TEALSHLHGLIVLRLRHLNINAIRDY-------SFKRLYRLKVLEISHWPYLDT-----------MTPNCLYGLN 225 (477)
T ss_dssp C----HHHHTTCTTCCEEEEESCCCCEECTT-------CSCSCTTCCEEEEECCTTCCE-----------ECTTTTTTCC
T ss_pred C----hhHhcccCCCcEEeCCCCcCcEeChh-------hcccCcccceeeCCCCccccc-----------cCcccccCcc
Confidence 1 11234445555555544443322221 334445555555554433210 1111222235
Q ss_pred CCeEEEeeecCCCCCC-CchhccCCCCEEEEecCCCCCcCCC-CCCCCccceeeccccc
Q 002308 759 LKELEIHYYGGNTVFP-SWMASLTNLKSLDLCFCENCEQLPP-LGKLPSLEQLFISYMS 815 (938)
Q Consensus 759 L~~L~l~~~~~~~~~p-~~~~~l~~L~~L~L~~~~~~~~l~~-l~~l~~L~~L~L~~~~ 815 (938)
|+.|++++|.+.. +| ..+..+++|+.|+|++|.+....+. +..+++|+.|+|++|.
T Consensus 226 L~~L~l~~n~l~~-~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~ 283 (477)
T 2id5_A 226 LTSLSITHCNLTA-VPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQ 283 (477)
T ss_dssp CSEEEEESSCCCS-CCHHHHTTCTTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSC
T ss_pred ccEEECcCCcccc-cCHHHhcCccccCeeECCCCcCCccChhhccccccCCEEECCCCc
Confidence 5555555555544 33 2344455555555555544433332 4555555555555554
No 31
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.93 E-value=3.8e-25 Score=249.38 Aligned_cols=305 Identities=18% Similarity=0.154 Sum_probs=150.9
Q ss_pred cccccCceeEEeccCCCCCCCCchhhHHHHHhccCCCeeEEecCCCCCCcccCccccccCCCCeeeecCCcccccccccc
Q 002308 533 STCRAKRIRSLLIEWPEFGHSSLNGEILEELFRESTSLRALDFPSFYLPLEIPRNIEKLVHLRYLNLSDQKIKKLPETLC 612 (938)
Q Consensus 533 ~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~n~~~~~lp~~~~~l~~L~~L~L~~~~i~~lp~~i~ 612 (938)
.+..+++|+.|++++|.+.. ++ .+..+++|++|+|++|.+. .+| ++.+++|++|++++|.++.+| ++
T Consensus 37 ~~~~l~~L~~L~Ls~n~l~~------~~--~l~~l~~L~~L~Ls~n~l~-~~~--~~~l~~L~~L~Ls~N~l~~~~--~~ 103 (457)
T 3bz5_A 37 SEEQLATLTSLDCHNSSITD------MT--GIEKLTGLTKLICTSNNIT-TLD--LSQNTNLTYLACDSNKLTNLD--VT 103 (457)
T ss_dssp EHHHHTTCCEEECCSSCCCC------CT--TGGGCTTCSEEECCSSCCS-CCC--CTTCTTCSEEECCSSCCSCCC--CT
T ss_pred ChhHcCCCCEEEccCCCccc------Ch--hhcccCCCCEEEccCCcCC-eEc--cccCCCCCEEECcCCCCceee--cC
Confidence 34445555555555554321 11 1445555555555555522 233 555555555555555555543 55
Q ss_pred CCCCccEEEcCCCCCcccccccccccCccceeecCCCcccccCCccCCCCCCCcccCeeEecCCCCCCCCcccccccccc
Q 002308 613 ELYNLEKLDISGCSDLRELPKGIGKLINMKHLLNSGTRSLRYMPVGIGRLTGLRTLGEFHVSAGGGVDGSKACRLESLKN 692 (938)
Q Consensus 613 ~l~~L~~L~l~~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~ 692 (938)
++++|++|++++|. +..+| +..+++|++|++++|.... ++ ++.+++|+.|++.+|...... .+..+++
T Consensus 104 ~l~~L~~L~L~~N~-l~~l~--~~~l~~L~~L~l~~N~l~~-l~--l~~l~~L~~L~l~~n~~~~~~------~~~~l~~ 171 (457)
T 3bz5_A 104 PLTKLTYLNCDTNK-LTKLD--VSQNPLLTYLNCARNTLTE-ID--VSHNTQLTELDCHLNKKITKL------DVTPQTQ 171 (457)
T ss_dssp TCTTCCEEECCSSC-CSCCC--CTTCTTCCEEECTTSCCSC-CC--CTTCTTCCEEECTTCSCCCCC------CCTTCTT
T ss_pred CCCcCCEEECCCCc-CCeec--CCCCCcCCEEECCCCccce-ec--cccCCcCCEEECCCCCccccc------ccccCCc
Confidence 55555555555554 33333 4555555555555553332 22 455555555555555322211 2444555
Q ss_pred cccCcceeecCcCCCCChhhhhhhhccCCCcCCceEEEEecCCCCCCCCCccchHHHHhhCCCCCCCCeEEEeeecCCCC
Q 002308 693 LEHLQVCCIRRLGDVSDVGEAKLLELDKKKYLSRLRLEFDKKGGGGGRRKNEDDQLLLEALQPPLNLKELEIHYYGGNTV 772 (938)
Q Consensus 693 L~~L~l~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~ 772 (938)
|+.|++.+|..... .+..+++|+.|++++|.+.. + .+..+++|+.|++++|.+.+
T Consensus 172 L~~L~ls~n~l~~l----------~l~~l~~L~~L~l~~N~l~~------------~--~l~~l~~L~~L~Ls~N~l~~- 226 (457)
T 3bz5_A 172 LTTLDCSFNKITEL----------DVSQNKLLNRLNCDTNNITK------------L--DLNQNIQLTFLDCSSNKLTE- 226 (457)
T ss_dssp CCEEECCSSCCCCC----------CCTTCTTCCEEECCSSCCSC------------C--CCTTCTTCSEEECCSSCCSC-
T ss_pred CCEEECCCCcccee----------ccccCCCCCEEECcCCcCCe------------e--ccccCCCCCEEECcCCcccc-
Confidence 55555555543321 13345556666666655543 1 24455666666666666665
Q ss_pred CCCchhccCCCCEEEEecCCCCCcCCCCCCCCccceeecc----------cccCceEeCcccccCCCCCCCCCCCCcccc
Q 002308 773 FPSWMASLTNLKSLDLCFCENCEQLPPLGKLPSLEQLFIS----------YMSSVKRVGDEFLGVESDRHDSSSSSSVII 842 (938)
Q Consensus 773 ~p~~~~~l~~L~~L~L~~~~~~~~l~~l~~l~~L~~L~L~----------~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~ 842 (938)
+| +..+++|+.|++++|.+.... ++.+++|+.|+++ +|..+..+| ..
T Consensus 227 ip--~~~l~~L~~L~l~~N~l~~~~--~~~l~~L~~L~l~~n~L~~L~l~~n~~~~~~~-------------------~~ 283 (457)
T 3bz5_A 227 ID--VTPLTQLTYFDCSVNPLTELD--VSTLSKLTTLHCIQTDLLEIDLTHNTQLIYFQ-------------------AE 283 (457)
T ss_dssp CC--CTTCTTCSEEECCSSCCSCCC--CTTCTTCCEEECTTCCCSCCCCTTCTTCCEEE-------------------CT
T ss_pred cC--ccccCCCCEEEeeCCcCCCcC--HHHCCCCCEEeccCCCCCEEECCCCccCCccc-------------------cc
Confidence 55 455666666666666544322 2334444433333 332222222 12
Q ss_pred cCCccceeeccccccccccccccccccccccccccccceecccccccccCCCCCCCCCCCcCEEEEecCcc
Q 002308 843 AFPKLKSLSIFEMEELEEWDYGITRTGNTFINIMPRLSSLTINYCSKLKALPDHIHQTTTLKELRIGECDL 913 (938)
Q Consensus 843 ~~~~L~~L~l~~~~~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~~ 913 (938)
.+++|+.|+++++..+..++........-.++.+++|+.|++++| .++.++ +.++++|+.|++++|+.
T Consensus 284 ~l~~L~~L~Ls~n~~l~~l~~~~~~L~~L~l~~~~~L~~L~L~~N-~l~~l~--l~~l~~L~~L~l~~N~l 351 (457)
T 3bz5_A 284 GCRKIKELDVTHNTQLYLLDCQAAGITELDLSQNPKLVYLYLNNT-ELTELD--VSHNTKLKSLSCVNAHI 351 (457)
T ss_dssp TCTTCCCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCCEEECTTC-CCSCCC--CTTCTTCSEEECCSSCC
T ss_pred ccccCCEEECCCCcccceeccCCCcceEechhhcccCCEEECCCC-cccccc--cccCCcCcEEECCCCCC
Confidence 345555555555554444443221111112335566777777764 345553 56677777777777664
No 32
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.93 E-value=1.1e-25 Score=270.16 Aligned_cols=368 Identities=15% Similarity=0.057 Sum_probs=260.4
Q ss_pred ceEEEEccCCCcCcccccccCceeEEeccCCCCCCCCchhhHHHHHhccCCCeeEEecCCCCCCcccCccccccCCCCee
Q 002308 518 RHLMLIMGKESTFPISTCRAKRIRSLLIEWPEFGHSSLNGEILEELFRESTSLRALDFPSFYLPLEIPRNIEKLVHLRYL 597 (938)
Q Consensus 518 r~l~l~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~n~~~~~lp~~~~~l~~L~~L 597 (938)
+.++.++++++.+|..+. ++++.|++++|.+. .+++..|.++++|++|+|++|.+.+..|..++++++|++|
T Consensus 7 ~~~~cs~~~L~~ip~~~~--~~l~~L~Ls~n~l~------~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L 78 (680)
T 1ziw_A 7 EVADCSHLKLTQVPDDLP--TNITVLNLTHNQLR------RLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVL 78 (680)
T ss_dssp SEEECCSSCCSSCCSCSC--TTCSEEECCSSCCC------CCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEE
T ss_pred CeeECCCCCccccccccC--CCCcEEECCCCCCC------CcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEE
Confidence 456777777877776654 79999999998763 3345558899999999999999777778889999999999
Q ss_pred eecCCccccccc-cccCCCCccEEEcCCCCCcccccccccccCccceeecCCCcccccCCccCCCCCCCcccCeeEecCC
Q 002308 598 NLSDQKIKKLPE-TLCELYNLEKLDISGCSDLRELPKGIGKLINMKHLLNSGTRSLRYMPVGIGRLTGLRTLGEFHVSAG 676 (938)
Q Consensus 598 ~L~~~~i~~lp~-~i~~l~~L~~L~l~~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~~~ 676 (938)
+|++|.++.+|. .|+++++|++|++++|......|..|.++++|++|++++|......|..++++++|++|++++|.+.
T Consensus 79 ~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~ 158 (680)
T 1ziw_A 79 NLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQ 158 (680)
T ss_dssp ECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCC
T ss_pred ECCCCccCccChhhhccCCCCCEEECCCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCccc
Confidence 999999999987 5999999999999999854444567999999999999999877777788999999999999998876
Q ss_pred CCCCCCcccccccccccccCcceeecCcCCCCChhhhhhhhccCC---------------------------CcCCceEE
Q 002308 677 GGVDGSKACRLESLKNLEHLQVCCIRRLGDVSDVGEAKLLELDKK---------------------------KYLSRLRL 729 (938)
Q Consensus 677 ~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~~---------------------------~~L~~L~L 729 (938)
...+.. .....+++|+.|++.+|......+. .+..+ ++|+.|++
T Consensus 159 ~~~~~~--~~~~~~~~L~~L~L~~n~l~~~~~~-------~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L 229 (680)
T 1ziw_A 159 ALKSEE--LDIFANSSLKKLELSSNQIKEFSPG-------CFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSL 229 (680)
T ss_dssp CBCHHH--HGGGTTCEESEEECTTCCCCCBCTT-------GGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEEC
T ss_pred ccCHHH--hhccccccccEEECCCCcccccChh-------hhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEc
Confidence 522111 1123457899999988876554433 22222 45666666
Q ss_pred EEecCCCCCCCCCccchHHHHhhCCCC--CCCCeEEEeeecCCCCCCCchhccCCCCEEEEecCCCCCcCCC-CCCCCcc
Q 002308 730 EFDKKGGGGGRRKNEDDQLLLEALQPP--LNLKELEIHYYGGNTVFPSWMASLTNLKSLDLCFCENCEQLPP-LGKLPSL 806 (938)
Q Consensus 730 ~~~~~~~~~~~~~~~~~~~~~~~l~~~--~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~l~~-l~~l~~L 806 (938)
++|.+.+. .+..+..+ ++|+.|++++|.+....|.++..+++|+.|+|++|.+....|. ++.+++|
T Consensus 230 ~~n~l~~~-----------~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L 298 (680)
T 1ziw_A 230 SNSQLSTT-----------SNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNV 298 (680)
T ss_dssp TTSCCCEE-----------CTTTTGGGGGSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTC
T ss_pred cCCccccc-----------ChhHhhccCcCCCCEEECCCCCcCccCcccccCcccccEeeCCCCccCccChhhhcCCCCc
Confidence 66655431 11223333 3488888888877775566777788888888888876666554 7788888
Q ss_pred ceeecccccCce-----EeCc----ccccCCCCCCCCCCCCccc-------ccCCccceeeccccc--------------
Q 002308 807 EQLFISYMSSVK-----RVGD----EFLGVESDRHDSSSSSSVI-------IAFPKLKSLSIFEME-------------- 856 (938)
Q Consensus 807 ~~L~L~~~~~l~-----~~~~----~~~~~~~l~~~~~~~~~~~-------~~~~~L~~L~l~~~~-------------- 856 (938)
+.|++++|..-. .+|. .+.....+..++++.|... ..+++|++|+++++.
T Consensus 299 ~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~ 378 (680)
T 1ziw_A 299 RYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSL 378 (680)
T ss_dssp CEEECTTCBCCC------CCEECTTTTTTCTTCCEEECCSCCBCCCCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGG
T ss_pred cEEeccchhhhcccccccccccChhhcccCCCCCEEECCCCccCCCChhHhccccCCcEEECCCCchhhhhcchhhhccc
Confidence 888887654211 1221 3444556666666665532 346778888887652
Q ss_pred ---ccccccccc---ccccccccccccccceecccccccccCCC-CCCCCCCCcCEEEEecCcc
Q 002308 857 ---ELEEWDYGI---TRTGNTFINIMPRLSSLTINYCSKLKALP-DHIHQTTTLKELRIGECDL 913 (938)
Q Consensus 857 ---~L~~~~~~~---~~~~~~~~~~l~~L~~L~l~~c~~l~~lp-~~l~~l~~L~~L~l~~c~~ 913 (938)
.|+.+.... ....+..+..+++|+.|++++|.....+| ..+..+++|++|++++|+.
T Consensus 379 ~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l 442 (680)
T 1ziw_A 379 AHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKY 442 (680)
T ss_dssp TTSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSE
T ss_pred ccCcCceEECCCCCCCeEChhhhhCCCCCCEEeCCCCcCccccCcccccCcccccEEecCCCCc
Confidence 233332221 11233455678888888888876555565 4567788888888888874
No 33
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.93 E-value=5.7e-26 Score=252.68 Aligned_cols=306 Identities=14% Similarity=0.074 Sum_probs=248.6
Q ss_pred ccccceEEEEccCCCcCccc-ccccCceeEEeccCCCCCCCCchhhHHHHHhccCCCeeEEecCCCCCCcccCccccccC
Q 002308 514 DEKVRHLMLIMGKESTFPIS-TCRAKRIRSLLIEWPEFGHSSLNGEILEELFRESTSLRALDFPSFYLPLEIPRNIEKLV 592 (938)
Q Consensus 514 ~~~~r~l~l~~~~~~~~~~~-~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~n~~~~~lp~~~~~l~ 592 (938)
...++.+++.++.+..+|.. +..+++|++|.+.+|.+ ..+++..|..+++|++|+|++|.+....|..++.++
T Consensus 44 l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i------~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~ 117 (390)
T 3o6n_A 44 LNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQI------EEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVP 117 (390)
T ss_dssp GCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCC------CEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCT
T ss_pred cCCceEEEecCCchhhCChhHhcccccCcEEECCCCcc------cccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCC
Confidence 37899999999998887765 57899999999999876 233444588999999999999996666677799999
Q ss_pred CCCeeeecCCcccccccc-ccCCCCccEEEcCCCCCcccccccccccCccceeecCCCcccccCCccCCCCCCCcccCee
Q 002308 593 HLRYLNLSDQKIKKLPET-LCELYNLEKLDISGCSDLRELPKGIGKLINMKHLLNSGTRSLRYMPVGIGRLTGLRTLGEF 671 (938)
Q Consensus 593 ~L~~L~L~~~~i~~lp~~-i~~l~~L~~L~l~~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~ 671 (938)
+|++|+|++|.++.+|.. +.++++|++|++++|......|..+..+++|++|++++|.... + .++.+++|+.|+++
T Consensus 118 ~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~-~--~~~~l~~L~~L~l~ 194 (390)
T 3o6n_A 118 LLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTH-V--DLSLIPSLFHANVS 194 (390)
T ss_dssp TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSB-C--CGGGCTTCSEEECC
T ss_pred CCCEEECCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCc-c--ccccccccceeecc
Confidence 999999999999999987 5899999999999999655556679999999999999996543 3 36778999999998
Q ss_pred EecCCCCCCCCcccccccccccccCcceeecCcCCCCChhhhhhhhccCCCcCCceEEEEecCCCCCCCCCccchHHHHh
Q 002308 672 HVSAGGGVDGSKACRLESLKNLEHLQVCCIRRLGDVSDVGEAKLLELDKKKYLSRLRLEFDKKGGGGGRRKNEDDQLLLE 751 (938)
Q Consensus 672 ~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~ 751 (938)
.|.+.. +....+|+.|++.+|....... ...++|+.|++++|.+.+ ..
T Consensus 195 ~n~l~~---------~~~~~~L~~L~l~~n~l~~~~~----------~~~~~L~~L~l~~n~l~~-------------~~ 242 (390)
T 3o6n_A 195 YNLLST---------LAIPIAVEELDASHNSINVVRG----------PVNVELTILKLQHNNLTD-------------TA 242 (390)
T ss_dssp SSCCSE---------EECCSSCSEEECCSSCCCEEEC----------CCCSSCCEEECCSSCCCC-------------CG
T ss_pred cccccc---------cCCCCcceEEECCCCeeeeccc----------cccccccEEECCCCCCcc-------------cH
Confidence 887654 4455688899988887654322 224689999999998875 24
Q ss_pred hCCCCCCCCeEEEeeecCCCCCCCchhccCCCCEEEEecCCCCCcCCCCCCCCccceeecccccCceEeCcccccCCCCC
Q 002308 752 ALQPPLNLKELEIHYYGGNTVFPSWMASLTNLKSLDLCFCENCEQLPPLGKLPSLEQLFISYMSSVKRVGDEFLGVESDR 831 (938)
Q Consensus 752 ~l~~~~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~l~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~l~ 831 (938)
.+..+++|+.|++++|.+.+..|..+..+++|+.|+|++|.+....+.++.+++|+.|++++|. +..+|..+
T Consensus 243 ~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~------- 314 (390)
T 3o6n_A 243 WLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHNH-LLHVERNQ------- 314 (390)
T ss_dssp GGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSSCCCEEECSSSCCTTCCEEECCSSC-CCCCGGGH-------
T ss_pred HHcCCCCccEEECCCCcCCCcChhHccccccCCEEECCCCcCcccCcccCCCCCCCEEECCCCc-ceecCccc-------
Confidence 6777899999999999999866888999999999999999876544447889999999999997 66665443
Q ss_pred CCCCCCCcccccCCccceeeccccccccccccccccccccccccccccceeccccccc
Q 002308 832 HDSSSSSSVIIAFPKLKSLSIFEMEELEEWDYGITRTGNTFINIMPRLSSLTINYCSK 889 (938)
Q Consensus 832 ~~~~~~~~~~~~~~~L~~L~l~~~~~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~ 889 (938)
..+++|+.|++.++. +..++ +..+++|+.|++++|+.
T Consensus 315 ----------~~l~~L~~L~L~~N~-i~~~~----------~~~~~~L~~L~l~~N~~ 351 (390)
T 3o6n_A 315 ----------PQFDRLENLYLDHNS-IVTLK----------LSTHHTLKNLTLSHNDW 351 (390)
T ss_dssp ----------HHHTTCSEEECCSSC-CCCCC----------CCTTCCCSEEECCSSCE
T ss_pred ----------cccCcCCEEECCCCc-cceeC----------chhhccCCEEEcCCCCc
Confidence 267899999998864 44433 23789999999999764
No 34
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.93 E-value=4e-25 Score=256.27 Aligned_cols=341 Identities=15% Similarity=0.087 Sum_probs=217.3
Q ss_pred ccccceEEEEccCCCcC-cccccccCceeEEeccCCCCCCCCchhhHHHHHhccCCCeeEEecCCCCCCc-ccCcccccc
Q 002308 514 DEKVRHLMLIMGKESTF-PISTCRAKRIRSLLIEWPEFGHSSLNGEILEELFRESTSLRALDFPSFYLPL-EIPRNIEKL 591 (938)
Q Consensus 514 ~~~~r~l~l~~~~~~~~-~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~n~~~~-~lp~~~~~l 591 (938)
...++.+++++|.+... +..+..+++|++|++++|.+. .++.. .+++|++|+|++|.+.+ .+|..++++
T Consensus 44 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~------~lp~~---~l~~L~~L~L~~N~l~~~~~p~~~~~l 114 (520)
T 2z7x_B 44 LSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLV------KISCH---PTVNLKHLDLSFNAFDALPICKEFGNM 114 (520)
T ss_dssp CTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCCC------EEECC---CCCCCSEEECCSSCCSSCCCCGGGGGC
T ss_pred cccccEEecCCCccCCcChHHhhcccCCCEEecCCCcee------ecCcc---ccCCccEEeccCCccccccchhhhccC
Confidence 36899999999999885 678999999999999999863 22222 78999999999999665 478999999
Q ss_pred CCCCeeeecCCccccccccccCCCCc--cEEEcCCCCC--cccccccccc--------------------------cCcc
Q 002308 592 VHLRYLNLSDQKIKKLPETLCELYNL--EKLDISGCSD--LRELPKGIGK--------------------------LINM 641 (938)
Q Consensus 592 ~~L~~L~L~~~~i~~lp~~i~~l~~L--~~L~l~~~~~--l~~lp~~i~~--------------------------l~~L 641 (938)
++|++|++++|.++. ..+..+++| ++|++++|.. ....|..+.. +++|
T Consensus 115 ~~L~~L~L~~n~l~~--~~~~~l~~L~L~~L~l~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L 192 (520)
T 2z7x_B 115 SQLKFLGLSTTHLEK--SSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANL 192 (520)
T ss_dssp TTCCEEEEEESSCCG--GGGGGGTTSCEEEEEEEECTTTTSSCCTTTTTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEE
T ss_pred CcceEEEecCcccch--hhccccccceeeEEEeecccccccccccccccccccceEEEEeccCcchhhhhhhhhhcccce
Confidence 999999999999886 457778888 9999999986 4445554443 4445
Q ss_pred ceeecCCCc-------ccccCCccCCCC---------------------------CCCcccCeeEecCCCCCCCCcc-cc
Q 002308 642 KHLLNSGTR-------SLRYMPVGIGRL---------------------------TGLRTLGEFHVSAGGGVDGSKA-CR 686 (938)
Q Consensus 642 ~~L~l~~~~-------~~~~~p~~l~~l---------------------------~~L~~L~l~~~~~~~~~~~~~~-~~ 686 (938)
+.|++++|. ....+| .++.+ ++|+.|++++|.+.+..+.... ..
T Consensus 193 ~~L~l~~n~~~~~~~~~~~~~~-~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~ 271 (520)
T 2z7x_B 193 ELSNIKCVLEDNKCSYFLSILA-KLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYS 271 (520)
T ss_dssp EECCEEECCSTTTTHHHHHHHH-GGGGCTTCCEEEEEEEEEEHHHHHHHHHHHHTSSCSEEEEEEEEEESCCCCCCCCCC
T ss_pred eeccccccccccccceeecchh-hhccccchhhccccccccCHHHHHHHHHHhhhCcccEEEeecccccCccccchhhcc
Confidence 555554442 111111 12222 2444444444443322222100 00
Q ss_pred cccccccccCcceeecCcCCCCChh-hhh------------------hhhccCCCcCCceEEEEecCCCCCCCCCccchH
Q 002308 687 LESLKNLEHLQVCCIRRLGDVSDVG-EAK------------------LLELDKKKYLSRLRLEFDKKGGGGGRRKNEDDQ 747 (938)
Q Consensus 687 l~~l~~L~~L~l~~~~~~~~~~~~~-~~~------------------~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~ 747 (938)
...+++|+.+++.++.. ..+... ... ......+++|+.|++++|.+.+
T Consensus 272 ~~~l~~L~~l~l~~n~~--~~p~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~l~~L~~L~Ls~n~l~~----------- 338 (520)
T 2z7x_B 272 GTSLKALSIHQVVSDVF--GFPQSYIYEIFSNMNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLLTD----------- 338 (520)
T ss_dssp SCCCCEEEEEEEEECCC--CSCTHHHHHHHHTCCCSEEEEESSCCCCCCCCSSCCCCCEEECCSSCCCT-----------
T ss_pred cccCceeEeccccccce--ecchhhhhcccccCceeEEEcCCCccccccchhhCCcccEEEeECCccCh-----------
Confidence 03344444444443333 111000 000 0001466778888888877654
Q ss_pred HHHhhCCCCCCCCeEEEeeecCCC--CCCCchhccCCCCEEEEecCCCCCcCCC--CCCCCccceeecccccCceEeCcc
Q 002308 748 LLLEALQPPLNLKELEIHYYGGNT--VFPSWMASLTNLKSLDLCFCENCEQLPP--LGKLPSLEQLFISYMSSVKRVGDE 823 (938)
Q Consensus 748 ~~~~~l~~~~~L~~L~l~~~~~~~--~~p~~~~~l~~L~~L~L~~~~~~~~l~~--l~~l~~L~~L~L~~~~~l~~~~~~ 823 (938)
..+..+..+++|+.|++++|.+.+ .+|..+..+++|+.|+|++|.+...+|. +..+++|+.|++++|.....++..
T Consensus 339 ~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~ 418 (520)
T 2z7x_B 339 TVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRC 418 (520)
T ss_dssp TTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTCCEEECCSSCCCGGGGGS
T ss_pred hhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCccCCEEECcCCCCCcchhhh
Confidence 134566777788888888887775 2445667778888888888877664442 677788888888877633333332
Q ss_pred cccCCCCCCCCCCCCccc------ccCCccceeeccccccccccccccccccccccccccccceeccccccc
Q 002308 824 FLGVESDRHDSSSSSSVI------IAFPKLKSLSIFEMEELEEWDYGITRTGNTFINIMPRLSSLTINYCSK 889 (938)
Q Consensus 824 ~~~~~~l~~~~~~~~~~~------~~~~~L~~L~l~~~~~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~ 889 (938)
+. ..+..++++.|.+. ..+++|+.|++.++ +++.++.. .+..+++|+.|++++|+.
T Consensus 419 l~--~~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~L~~N-~l~~l~~~-------~~~~l~~L~~L~l~~N~~ 480 (520)
T 2z7x_B 419 LP--PRIKVLDLHSNKIKSIPKQVVKLEALQELNVASN-QLKSVPDG-------IFDRLTSLQKIWLHTNPW 480 (520)
T ss_dssp CC--TTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSS-CCCCCCTT-------TTTTCTTCCEEECCSSCB
T ss_pred hc--ccCCEEECCCCcccccchhhhcCCCCCEEECCCC-cCCccCHH-------HhccCCcccEEECcCCCC
Confidence 21 45566666655532 25778999999886 45544432 345799999999999864
No 35
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.93 E-value=1.9e-25 Score=255.74 Aligned_cols=312 Identities=18% Similarity=0.147 Sum_probs=247.5
Q ss_pred EeeCCcccccCCCCcccccceEEEEccCCCcC-cccccccCceeEEeccCCCCCCCCchhhHHHHHhccCCCeeEEecCC
Q 002308 499 LEVNGSEELNVPNSLDEKVRHLMLIMGKESTF-PISTCRAKRIRSLLIEWPEFGHSSLNGEILEELFRESTSLRALDFPS 577 (938)
Q Consensus 499 ~~~~~~~~~~~~~~~~~~~r~l~l~~~~~~~~-~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~ 577 (938)
..+.......+|...+..++.+++++|.+..+ +..+..+++|+.|.+++|.+ ..+.+..|..+++|++|+|++
T Consensus 16 v~c~~~~l~~ip~~~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i------~~~~~~~~~~l~~L~~L~L~~ 89 (477)
T 2id5_A 16 VLCHRKRFVAVPEGIPTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIV------SAVEPGAFNNLFNLRTLGLRS 89 (477)
T ss_dssp EECCSCCCSSCCSCCCTTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCC------CEECTTTTTTCTTCCEEECCS
T ss_pred EEeCCCCcCcCCCCCCCCCcEEECCCCccceECHhHccCCCCCCEEECCCCcc------CEeChhhhhCCccCCEEECCC
Confidence 33444444556777778999999999999885 56889999999999999875 233445588999999999999
Q ss_pred CCCCcccCccccccCCCCeeeecCCccccc-cccccCCCCccEEEcCCCCCcccccccccccCccceeecCCCcccccCC
Q 002308 578 FYLPLEIPRNIEKLVHLRYLNLSDQKIKKL-PETLCELYNLEKLDISGCSDLRELPKGIGKLINMKHLLNSGTRSLRYMP 656 (938)
Q Consensus 578 n~~~~~lp~~~~~l~~L~~L~L~~~~i~~l-p~~i~~l~~L~~L~l~~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~p 656 (938)
|.+....+..|+++++|++|+|++|.+..+ |..+.++++|++|++++|......|..+..+++|++|++++|......+
T Consensus 90 n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~ 169 (477)
T 2id5_A 90 NRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPT 169 (477)
T ss_dssp SCCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCH
T ss_pred CcCCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccCh
Confidence 995544445689999999999999999865 5679999999999999999666667789999999999999996655444
Q ss_pred ccCCCCCCCcccCeeEecCCCCCCCCcccccccccccccCcceeecCcCCCCChhhhhhhhccCCCcCCceEEEEecCCC
Q 002308 657 VGIGRLTGLRTLGEFHVSAGGGVDGSKACRLESLKNLEHLQVCCIRRLGDVSDVGEAKLLELDKKKYLSRLRLEFDKKGG 736 (938)
Q Consensus 657 ~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~ 736 (938)
..+.++++|+.|++.+|.+....+ ..+..+++|+.|++.+|......+. ......+|+.|++++|.+..
T Consensus 170 ~~l~~l~~L~~L~l~~n~i~~~~~----~~~~~l~~L~~L~l~~~~~~~~~~~-------~~~~~~~L~~L~l~~n~l~~ 238 (477)
T 2id5_A 170 EALSHLHGLIVLRLRHLNINAIRD----YSFKRLYRLKVLEISHWPYLDTMTP-------NCLYGLNLTSLSITHCNLTA 238 (477)
T ss_dssp HHHTTCTTCCEEEEESCCCCEECT----TCSCSCTTCCEEEEECCTTCCEECT-------TTTTTCCCSEEEEESSCCCS
T ss_pred hHhcccCCCcEEeCCCCcCcEeCh----hhcccCcccceeeCCCCccccccCc-------ccccCccccEEECcCCcccc
Confidence 568999999999999998765322 2477889999999988876654443 23334589999999998865
Q ss_pred CCCCCCccchHHHHhhCCCCCCCCeEEEeeecCCCCCCCchhccCCCCEEEEecCCCCCcCCC-CCCCCccceeeccccc
Q 002308 737 GGGRRKNEDDQLLLEALQPPLNLKELEIHYYGGNTVFPSWMASLTNLKSLDLCFCENCEQLPP-LGKLPSLEQLFISYMS 815 (938)
Q Consensus 737 ~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~l~~-l~~l~~L~~L~L~~~~ 815 (938)
. ....+..+++|+.|+|++|.+....+..+..+++|+.|+|++|.+....|. +..+++|+.|+|++|.
T Consensus 239 ~-----------~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~ 307 (477)
T 2id5_A 239 V-----------PYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQ 307 (477)
T ss_dssp C-----------CHHHHTTCTTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSC
T ss_pred c-----------CHHHhcCccccCeeECCCCcCCccChhhccccccCCEEECCCCccceECHHHhcCcccCCEEECCCCc
Confidence 1 124567889999999999999885566788999999999999988877665 8999999999999997
Q ss_pred CceEeCcccccCCCCCCCCCCCCcccccCCccceeecccc
Q 002308 816 SVKRVGDEFLGVESDRHDSSSSSSVIIAFPKLKSLSIFEM 855 (938)
Q Consensus 816 ~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~~ 855 (938)
++.++...+. .+++|+.|++.++
T Consensus 308 -l~~~~~~~~~----------------~l~~L~~L~l~~N 330 (477)
T 2id5_A 308 -LTTLEESVFH----------------SVGNLETLILDSN 330 (477)
T ss_dssp -CSCCCGGGBS----------------CGGGCCEEECCSS
T ss_pred -CceeCHhHcC----------------CCcccCEEEccCC
Confidence 6666654431 4566666666554
No 36
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.92 E-value=5.6e-25 Score=250.57 Aligned_cols=318 Identities=18% Similarity=0.214 Sum_probs=251.6
Q ss_pred cccCceeEEeccCCCCCCCCchhhHHHHHhccCCCeeEEecCCCCCCcccCccccccCCCCeeeecCCccccccccccCC
Q 002308 535 CRAKRIRSLLIEWPEFGHSSLNGEILEELFRESTSLRALDFPSFYLPLEIPRNIEKLVHLRYLNLSDQKIKKLPETLCEL 614 (938)
Q Consensus 535 ~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~n~~~~~lp~~~~~l~~L~~L~L~~~~i~~lp~~i~~l 614 (938)
..++++++|.+.++.+.. + +. +..+++|++|+|++|. ...+|. ++++++|++|++++|.+..++. +.++
T Consensus 43 ~~l~~l~~L~l~~~~i~~------l-~~-~~~l~~L~~L~Ls~n~-l~~~~~-~~~l~~L~~L~l~~n~l~~~~~-~~~l 111 (466)
T 1o6v_A 43 TDLDQVTTLQADRLGIKS------I-DG-VEYLNNLTQINFSNNQ-LTDITP-LKNLTKLVDILMNNNQIADITP-LANL 111 (466)
T ss_dssp HHHHTCCEEECCSSCCCC------C-TT-GGGCTTCCEEECCSSC-CCCCGG-GTTCTTCCEEECCSSCCCCCGG-GTTC
T ss_pred hHhccccEEecCCCCCcc------C-cc-hhhhcCCCEEECCCCc-cCCchh-hhccccCCEEECCCCccccChh-hcCC
Confidence 457899999999887532 2 22 6789999999999999 445555 9999999999999999998887 9999
Q ss_pred CCccEEEcCCCCCcccccccccccCccceeecCCCcccccCCccCCCCCCCcccCeeEecCCCCCCCCcccccccccccc
Q 002308 615 YNLEKLDISGCSDLRELPKGIGKLINMKHLLNSGTRSLRYMPVGIGRLTGLRTLGEFHVSAGGGVDGSKACRLESLKNLE 694 (938)
Q Consensus 615 ~~L~~L~l~~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~L~ 694 (938)
++|++|++++|. +..+|. +..+++|++|++++|... .++ .++.+++|+.|++. +.... ...+..+++|+
T Consensus 112 ~~L~~L~L~~n~-l~~~~~-~~~l~~L~~L~l~~n~l~-~~~-~~~~l~~L~~L~l~-~~~~~------~~~~~~l~~L~ 180 (466)
T 1o6v_A 112 TNLTGLTLFNNQ-ITDIDP-LKNLTNLNRLELSSNTIS-DIS-ALSGLTSLQQLSFG-NQVTD------LKPLANLTTLE 180 (466)
T ss_dssp TTCCEEECCSSC-CCCCGG-GTTCTTCSEEEEEEEEEC-CCG-GGTTCTTCSEEEEE-ESCCC------CGGGTTCTTCC
T ss_pred CCCCEEECCCCC-CCCChH-HcCCCCCCEEECCCCccC-CCh-hhccCCcccEeecC-CcccC------chhhccCCCCC
Confidence 999999999998 666665 899999999999999544 444 48899999999986 33333 22378889999
Q ss_pred cCcceeecCcCCCCChhhhhhhhccCCCcCCceEEEEecCCCCCCCCCccchHHHHhhCCCCCCCCeEEEeeecCCCCCC
Q 002308 695 HLQVCCIRRLGDVSDVGEAKLLELDKKKYLSRLRLEFDKKGGGGGRRKNEDDQLLLEALQPPLNLKELEIHYYGGNTVFP 774 (938)
Q Consensus 695 ~L~l~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~p 774 (938)
.|++.+|..... ..+..+++|+.|++++|.+... ..+..+++|+.|++++|.+.. ++
T Consensus 181 ~L~l~~n~l~~~---------~~l~~l~~L~~L~l~~n~l~~~-------------~~~~~l~~L~~L~l~~n~l~~-~~ 237 (466)
T 1o6v_A 181 RLDISSNKVSDI---------SVLAKLTNLESLIATNNQISDI-------------TPLGILTNLDELSLNGNQLKD-IG 237 (466)
T ss_dssp EEECCSSCCCCC---------GGGGGCTTCSEEECCSSCCCCC-------------GGGGGCTTCCEEECCSSCCCC-CG
T ss_pred EEECcCCcCCCC---------hhhccCCCCCEEEecCCccccc-------------ccccccCCCCEEECCCCCccc-ch
Confidence 999988875432 1467889999999999988651 125568899999999999988 54
Q ss_pred CchhccCCCCEEEEecCCCCCcCCCCCCCCccceeecccccCceEeCcccccCCCCCCCCCCCCccc-----ccCCccce
Q 002308 775 SWMASLTNLKSLDLCFCENCEQLPPLGKLPSLEQLFISYMSSVKRVGDEFLGVESDRHDSSSSSSVI-----IAFPKLKS 849 (938)
Q Consensus 775 ~~~~~l~~L~~L~L~~~~~~~~l~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~-----~~~~~L~~ 849 (938)
.+..+++|+.|++++|.+....+ +..+++|+.|++++|. +..++. +.....++.++++.|.+. ..+++|+.
T Consensus 238 -~l~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~-l~~~~~-~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~ 313 (466)
T 1o6v_A 238 -TLASLTNLTDLDLANNQISNLAP-LSGLTKLTELKLGANQ-ISNISP-LAGLTALTNLELNENQLEDISPISNLKNLTY 313 (466)
T ss_dssp -GGGGCTTCSEEECCSSCCCCCGG-GTTCTTCSEEECCSSC-CCCCGG-GTTCTTCSEEECCSSCCSCCGGGGGCTTCSE
T ss_pred -hhhcCCCCCEEECCCCccccchh-hhcCCCCCEEECCCCc-cCcccc-ccCCCccCeEEcCCCcccCchhhcCCCCCCE
Confidence 57899999999999998765444 8999999999999997 555554 556667777777766542 45678888
Q ss_pred eeccccccccccccccccccccccccccccceecccccccccCCCCCCCCCCCcCEEEEecCcc
Q 002308 850 LSIFEMEELEEWDYGITRTGNTFINIMPRLSSLTINYCSKLKALPDHIHQTTTLKELRIGECDL 913 (938)
Q Consensus 850 L~l~~~~~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~~ 913 (938)
|+++++. +..+.. +..+++|+.|++++| .++.++ .+..+++|+.|++++|+.
T Consensus 314 L~L~~n~-l~~~~~---------~~~l~~L~~L~l~~n-~l~~~~-~l~~l~~L~~L~l~~n~l 365 (466)
T 1o6v_A 314 LTLYFNN-ISDISP---------VSSLTKLQRLFFYNN-KVSDVS-SLANLTNINWLSAGHNQI 365 (466)
T ss_dssp EECCSSC-CSCCGG---------GGGCTTCCEEECCSS-CCCCCG-GGTTCTTCCEEECCSSCC
T ss_pred EECcCCc-CCCchh---------hccCccCCEeECCCC-ccCCch-hhccCCCCCEEeCCCCcc
Confidence 8888763 333221 357899999999997 466665 578899999999999986
No 37
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.92 E-value=4.4e-25 Score=241.53 Aligned_cols=301 Identities=18% Similarity=0.197 Sum_probs=242.8
Q ss_pred cccceEEEEccCCCcCcccccccCceeEEeccCCCCCCCCchhhHHHHHhccCCCeeEEecCCCCCCcccCccccccCCC
Q 002308 515 EKVRHLMLIMGKESTFPISTCRAKRIRSLLIEWPEFGHSSLNGEILEELFRESTSLRALDFPSFYLPLEIPRNIEKLVHL 594 (938)
Q Consensus 515 ~~~r~l~l~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~n~~~~~lp~~~~~l~~L 594 (938)
+.++++.+.++.+..++ .+..+++|++|.+++|.+.. +++ +..+++|++|++++|. ...+| .+..+++|
T Consensus 44 ~~L~~L~l~~~~i~~~~-~~~~~~~L~~L~l~~n~i~~------~~~--~~~l~~L~~L~L~~n~-i~~~~-~~~~l~~L 112 (347)
T 4fmz_A 44 ESITKLVVAGEKVASIQ-GIEYLTNLEYLNLNGNQITD------ISP--LSNLVKLTNLYIGTNK-ITDIS-ALQNLTNL 112 (347)
T ss_dssp TTCSEEECCSSCCCCCT-TGGGCTTCCEEECCSSCCCC------CGG--GTTCTTCCEEECCSSC-CCCCG-GGTTCTTC
T ss_pred ccccEEEEeCCccccch-hhhhcCCccEEEccCCcccc------chh--hhcCCcCCEEEccCCc-ccCch-HHcCCCcC
Confidence 67999999999988765 48889999999999987632 222 7899999999999998 44555 58999999
Q ss_pred CeeeecCCccccccccccCCCCccEEEcCCCCCcccccccccccCccceeecCCCcccccCCccCCCCCCCcccCeeEec
Q 002308 595 RYLNLSDQKIKKLPETLCELYNLEKLDISGCSDLRELPKGIGKLINMKHLLNSGTRSLRYMPVGIGRLTGLRTLGEFHVS 674 (938)
Q Consensus 595 ~~L~L~~~~i~~lp~~i~~l~~L~~L~l~~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~ 674 (938)
++|++++|.+..+|. +..+++|++|++++|.....++. +..+++|++|++++|... .++. +..+++|+.|++++|.
T Consensus 113 ~~L~l~~n~i~~~~~-~~~l~~L~~L~l~~n~~~~~~~~-~~~l~~L~~L~l~~~~~~-~~~~-~~~l~~L~~L~l~~n~ 188 (347)
T 4fmz_A 113 RELYLNEDNISDISP-LANLTKMYSLNLGANHNLSDLSP-LSNMTGLNYLTVTESKVK-DVTP-IANLTDLYSLSLNYNQ 188 (347)
T ss_dssp SEEECTTSCCCCCGG-GTTCTTCCEEECTTCTTCCCCGG-GTTCTTCCEEECCSSCCC-CCGG-GGGCTTCSEEECTTSC
T ss_pred CEEECcCCcccCchh-hccCCceeEEECCCCCCcccccc-hhhCCCCcEEEecCCCcC-Cchh-hccCCCCCEEEccCCc
Confidence 999999999998887 99999999999999986666555 899999999999999654 3433 8899999999999988
Q ss_pred CCCCCCCCcccccccccccccCcceeecCcCCCCChhhhhhhhccCCCcCCceEEEEecCCCCCCCCCccchHHHHhhCC
Q 002308 675 AGGGVDGSKACRLESLKNLEHLQVCCIRRLGDVSDVGEAKLLELDKKKYLSRLRLEFDKKGGGGGRRKNEDDQLLLEALQ 754 (938)
Q Consensus 675 ~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~ 754 (938)
+.. ...+..+++|+.|++.+|...... .+..+++|+.|++++|.+.. ++ .+.
T Consensus 189 l~~------~~~~~~l~~L~~L~l~~n~l~~~~---------~~~~~~~L~~L~l~~n~l~~------------~~-~~~ 240 (347)
T 4fmz_A 189 IED------ISPLASLTSLHYFTAYVNQITDIT---------PVANMTRLNSLKIGNNKITD------------LS-PLA 240 (347)
T ss_dssp CCC------CGGGGGCTTCCEEECCSSCCCCCG---------GGGGCTTCCEEECCSSCCCC------------CG-GGT
T ss_pred ccc------cccccCCCccceeecccCCCCCCc---------hhhcCCcCCEEEccCCccCC------------Cc-chh
Confidence 765 222677888999988887654322 26778999999999998875 22 277
Q ss_pred CCCCCCeEEEeeecCCCCCCCchhccCCCCEEEEecCCCCCcCCCCCCCCccceeecccccCceEeCcccccCCCCCCCC
Q 002308 755 PPLNLKELEIHYYGGNTVFPSWMASLTNLKSLDLCFCENCEQLPPLGKLPSLEQLFISYMSSVKRVGDEFLGVESDRHDS 834 (938)
Q Consensus 755 ~~~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~l~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~l~~~~ 834 (938)
.+++|++|++++|.+.. + ..+..+++|+.|++++|.+.+ ++.+..+++|+.|++++|. +...+...
T Consensus 241 ~l~~L~~L~l~~n~l~~-~-~~~~~l~~L~~L~l~~n~l~~-~~~~~~l~~L~~L~L~~n~-l~~~~~~~---------- 306 (347)
T 4fmz_A 241 NLSQLTWLEIGTNQISD-I-NAVKDLTKLKMLNVGSNQISD-ISVLNNLSQLNSLFLNNNQ-LGNEDMEV---------- 306 (347)
T ss_dssp TCTTCCEEECCSSCCCC-C-GGGTTCTTCCEEECCSSCCCC-CGGGGGCTTCSEEECCSSC-CCGGGHHH----------
T ss_pred cCCCCCEEECCCCccCC-C-hhHhcCCCcCEEEccCCccCC-ChhhcCCCCCCEEECcCCc-CCCcChhH----------
Confidence 88999999999999988 5 467899999999999997665 4668999999999999997 43332221
Q ss_pred CCCCcccccCCccceeeccccccccccccccccccccccccccccceecccccc
Q 002308 835 SSSSSVIIAFPKLKSLSIFEMEELEEWDYGITRTGNTFINIMPRLSSLTINYCS 888 (938)
Q Consensus 835 ~~~~~~~~~~~~L~~L~l~~~~~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~ 888 (938)
...+++|+.|++++++ ++.+.. +..+++|+.|++++|+
T Consensus 307 ------l~~l~~L~~L~L~~n~-l~~~~~---------~~~l~~L~~L~l~~N~ 344 (347)
T 4fmz_A 307 ------IGGLTNLTTLFLSQNH-ITDIRP---------LASLSKMDSADFANQV 344 (347)
T ss_dssp ------HHTCTTCSEEECCSSS-CCCCGG---------GGGCTTCSEESSSCC-
T ss_pred ------hhccccCCEEEccCCc-cccccC---------hhhhhccceeehhhhc
Confidence 1368999999999875 433322 3479999999999976
No 38
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.92 E-value=8.6e-25 Score=255.51 Aligned_cols=353 Identities=14% Similarity=0.091 Sum_probs=220.2
Q ss_pred EeeCCcccccCCCCcccccceEEEEccCCCcCc-ccccccCceeEEeccCCCCCCCCchhhHHHHHhccCCCeeEEecCC
Q 002308 499 LEVNGSEELNVPNSLDEKVRHLMLIMGKESTFP-ISTCRAKRIRSLLIEWPEFGHSSLNGEILEELFRESTSLRALDFPS 577 (938)
Q Consensus 499 ~~~~~~~~~~~~~~~~~~~r~l~l~~~~~~~~~-~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~ 577 (938)
.++.+.....+|...+..++.+++++|.+...+ ..+..+++|++|++++|.+ ..+.+..|..+++|++|+|++
T Consensus 36 l~ls~~~L~~ip~~~~~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l------~~~~~~~~~~l~~L~~L~Ls~ 109 (562)
T 3a79_B 36 VDYSNRNLTHVPKDLPPRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRI------RSLDFHVFLFNQDLEYLDVSH 109 (562)
T ss_dssp EECTTSCCCSCCTTSCTTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCC------CEECTTTTTTCTTCCEEECTT
T ss_pred EEcCCCCCccCCCCCCCCcCEEECCCCCccccChhhhccCCCccEEECCCCCC------CcCCHHHhCCCCCCCEEECCC
Confidence 344443444456666678888888888887754 5778888888888888775 233344577888888888888
Q ss_pred CCCCcccCccccccCCCCeeeecCCcccccc--ccccCCCCccEEEcCCCCCcccccccccccCcc--ceeecCCCcc--
Q 002308 578 FYLPLEIPRNIEKLVHLRYLNLSDQKIKKLP--ETLCELYNLEKLDISGCSDLRELPKGIGKLINM--KHLLNSGTRS-- 651 (938)
Q Consensus 578 n~~~~~lp~~~~~l~~L~~L~L~~~~i~~lp--~~i~~l~~L~~L~l~~~~~l~~lp~~i~~l~~L--~~L~l~~~~~-- 651 (938)
|. ...+|.. .+++|++|+|++|.++.+| ..++++++|++|++++|.... ..+..+++| ++|++++|..
T Consensus 110 N~-l~~lp~~--~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~---~~~~~l~~L~L~~L~L~~n~l~~ 183 (562)
T 3a79_B 110 NR-LQNISCC--PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQ---LDLLPVAHLHLSCILLDLVSYHI 183 (562)
T ss_dssp SC-CCEECSC--CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCT---TTTGGGTTSCEEEEEEEESSCCC
T ss_pred Cc-CCccCcc--ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCcccc---CchhhhhhceeeEEEeecccccc
Confidence 88 4467765 7888888888888887654 678888888888888887433 234455555 7777777755
Q ss_pred cccCCccCCCCC--------------------------------------------------------------------
Q 002308 652 LRYMPVGIGRLT-------------------------------------------------------------------- 663 (938)
Q Consensus 652 ~~~~p~~l~~l~-------------------------------------------------------------------- 663 (938)
....|..+..+.
T Consensus 184 ~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~l~~ 263 (562)
T 3a79_B 184 KGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTW 263 (562)
T ss_dssp CSSSCCEEEECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEEEEECH
T ss_pred cccCcccccccCcceEEEEecCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEEEecCCcCcH
Confidence 333343333221
Q ss_pred -------------CCcccCeeEecCCCCCCCCcccccccccccccCcceeecCcCC-CCChhhhhhh-------------
Q 002308 664 -------------GLRTLGEFHVSAGGGVDGSKACRLESLKNLEHLQVCCIRRLGD-VSDVGEAKLL------------- 716 (938)
Q Consensus 664 -------------~L~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~-~~~~~~~~~~------------- 716 (938)
+|+.|++++|.+.+..+...... ..++|+.|.+.++..... .+. .....
T Consensus 264 ~~~~~~~~~~~~~~L~~L~l~~n~l~~~ip~~~~~~--~~~~L~~L~~~~~~~~~~~~p~--~~~~~~~~~~~L~~L~l~ 339 (562)
T 3a79_B 264 KCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTY--SETALKSLMIEHVKNQVFLFSK--EALYSVFAEMNIKMLSIS 339 (562)
T ss_dssp HHHHHHHHHHTTSSEEEEEEEEEEECSCCCCCCCCC--CSCSCCEEEEEEEEECCCSSCH--HHHHHHHHTCCCSEEEEE
T ss_pred HHHHHHHHhhhcccccEEEEeccEeeccccchhhhc--ccccchheehhhcccceeecCh--hhhhhhhccCcceEEEcc
Confidence 33344444443332222110000 001111111111110000 000 00000
Q ss_pred --------hccCCCcCCceEEEEecCCCCCCCCCccchHHHHhhCCCCCCCCeEEEeeecCCCCCC---CchhccCCCCE
Q 002308 717 --------ELDKKKYLSRLRLEFDKKGGGGGRRKNEDDQLLLEALQPPLNLKELEIHYYGGNTVFP---SWMASLTNLKS 785 (938)
Q Consensus 717 --------~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~p---~~~~~l~~L~~ 785 (938)
....+++|+.|++++|.+.+ ..+..+..+++|+.|++++|.+.+ ++ ..+..+++|+.
T Consensus 340 ~n~~~~~~~~~~l~~L~~L~l~~n~l~~-----------~~~~~~~~l~~L~~L~L~~N~l~~-~~~~~~~~~~l~~L~~ 407 (562)
T 3a79_B 340 DTPFIHMVCPPSPSSFTFLNFTQNVFTD-----------SVFQGCSTLKRLQTLILQRNGLKN-FFKVALMTKNMSSLET 407 (562)
T ss_dssp SSCCCCCCCCSSCCCCCEEECCSSCCCT-----------TTTTTCCSCSSCCEEECCSSCCCB-TTHHHHTTTTCTTCCE
T ss_pred CCCcccccCccCCCCceEEECCCCcccc-----------chhhhhcccCCCCEEECCCCCcCC-cccchhhhcCCCCCCE
Confidence 01567888999998888764 135567778888999998888876 44 45678888999
Q ss_pred EEEecCCCCCcCCC--CCCCCccceeecccccCceEeCcccccCCCCCCCCCCCCccc------ccCCccceeecccccc
Q 002308 786 LDLCFCENCEQLPP--LGKLPSLEQLFISYMSSVKRVGDEFLGVESDRHDSSSSSSVI------IAFPKLKSLSIFEMEE 857 (938)
Q Consensus 786 L~L~~~~~~~~l~~--l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~------~~~~~L~~L~l~~~~~ 857 (938)
|+|++|.+...+|. +..+++|+.|++++|.....++..+. ..++.++++.|.+. ..+++|+.|++.++ +
T Consensus 408 L~l~~N~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N~l~~ip~~~~~l~~L~~L~L~~N-~ 484 (562)
T 3a79_B 408 LDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIMSIPKDVTHLQALQELNVASN-Q 484 (562)
T ss_dssp EECTTSCCBSCCSSCCCCCCTTCCEEECCSSCCCGGGGSSCC--TTCSEEECCSSCCCCCCTTTTSSCCCSEEECCSS-C
T ss_pred EECCCCcCCCccChhhhcCcccCCEEECCCCCCCcchhhhhc--CcCCEEECCCCcCcccChhhcCCCCCCEEECCCC-C
Confidence 99988887764553 77888888888888873333333221 45666777666532 25678999999886 3
Q ss_pred ccccccccccccccccccccccceeccccccc
Q 002308 858 LEEWDYGITRTGNTFINIMPRLSSLTINYCSK 889 (938)
Q Consensus 858 L~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~ 889 (938)
++.++.. .+..+++|+.|++++|+.
T Consensus 485 l~~l~~~-------~~~~l~~L~~L~l~~N~~ 509 (562)
T 3a79_B 485 LKSVPDG-------VFDRLTSLQYIWLHDNPW 509 (562)
T ss_dssp CCCCCTT-------STTTCTTCCCEECCSCCB
T ss_pred CCCCCHH-------HHhcCCCCCEEEecCCCc
Confidence 5544432 245799999999999864
No 39
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.92 E-value=7.2e-25 Score=247.13 Aligned_cols=304 Identities=16% Similarity=0.135 Sum_probs=236.2
Q ss_pred cccceEEEEccCCCcCcccccccCceeEEeccCCCCCCCCchhhHHHHHhccCCCeeEEecCCCCCCcccCccccccCCC
Q 002308 515 EKVRHLMLIMGKESTFPISTCRAKRIRSLLIEWPEFGHSSLNGEILEELFRESTSLRALDFPSFYLPLEIPRNIEKLVHL 594 (938)
Q Consensus 515 ~~~r~l~l~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~n~~~~~lp~~~~~l~~L 594 (938)
..++.++++++.+...+ .+..+++|+.|.+++|.+.. ++ +..+++|++|++++|.+.+ +| ++.+++|
T Consensus 42 ~~L~~L~Ls~n~l~~~~-~l~~l~~L~~L~Ls~n~l~~------~~---~~~l~~L~~L~Ls~N~l~~-~~--~~~l~~L 108 (457)
T 3bz5_A 42 ATLTSLDCHNSSITDMT-GIEKLTGLTKLICTSNNITT------LD---LSQNTNLTYLACDSNKLTN-LD--VTPLTKL 108 (457)
T ss_dssp TTCCEEECCSSCCCCCT-TGGGCTTCSEEECCSSCCSC------CC---CTTCTTCSEEECCSSCCSC-CC--CTTCTTC
T ss_pred CCCCEEEccCCCcccCh-hhcccCCCCEEEccCCcCCe------Ec---cccCCCCCEEECcCCCCce-ee--cCCCCcC
Confidence 67999999999998775 78899999999999998643 21 6789999999999999544 54 8999999
Q ss_pred CeeeecCCccccccccccCCCCccEEEcCCCCCcccccccccccCccceeecCCCcccccCCccCCCCCCCcccCeeEec
Q 002308 595 RYLNLSDQKIKKLPETLCELYNLEKLDISGCSDLRELPKGIGKLINMKHLLNSGTRSLRYMPVGIGRLTGLRTLGEFHVS 674 (938)
Q Consensus 595 ~~L~L~~~~i~~lp~~i~~l~~L~~L~l~~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~ 674 (938)
++|++++|.++.+| ++.+++|++|++++|. +..+| +..+++|++|++++|.....+ .++.+++|+.|++++|.
T Consensus 109 ~~L~L~~N~l~~l~--~~~l~~L~~L~l~~N~-l~~l~--l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~ 181 (457)
T 3bz5_A 109 TYLNCDTNKLTKLD--VSQNPLLTYLNCARNT-LTEID--VSHNTQLTELDCHLNKKITKL--DVTPQTQLTTLDCSFNK 181 (457)
T ss_dssp CEEECCSSCCSCCC--CTTCTTCCEEECTTSC-CSCCC--CTTCTTCCEEECTTCSCCCCC--CCTTCTTCCEEECCSSC
T ss_pred CEEECCCCcCCeec--CCCCCcCCEEECCCCc-cceec--cccCCcCCEEECCCCCccccc--ccccCCcCCEEECCCCc
Confidence 99999999999886 8999999999999998 55564 889999999999999766665 47899999999999998
Q ss_pred CCCCCCCCcccccccccccccCcceeecCcCCCCChhhhhhhhccCCCcCCceEEEEecCCCCCCCCCccchHHHHhhCC
Q 002308 675 AGGGVDGSKACRLESLKNLEHLQVCCIRRLGDVSDVGEAKLLELDKKKYLSRLRLEFDKKGGGGGRRKNEDDQLLLEALQ 754 (938)
Q Consensus 675 ~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~ 754 (938)
+... .+..+++|+.|++.+|.+... .+..+++|+.|++++|.+.+ ++ +.
T Consensus 182 l~~l-------~l~~l~~L~~L~l~~N~l~~~----------~l~~l~~L~~L~Ls~N~l~~------------ip--~~ 230 (457)
T 3bz5_A 182 ITEL-------DVSQNKLLNRLNCDTNNITKL----------DLNQNIQLTFLDCSSNKLTE------------ID--VT 230 (457)
T ss_dssp CCCC-------CCTTCTTCCEEECCSSCCSCC----------CCTTCTTCSEEECCSSCCSC------------CC--CT
T ss_pred ccee-------ccccCCCCCEEECcCCcCCee----------ccccCCCCCEEECcCCcccc------------cC--cc
Confidence 8761 167889999999988876543 36678999999999999875 22 67
Q ss_pred CCCCCCeEEEeeecCCCCCCCchhccCCCC----------EEEEecCCCCCcCCCCCCCCccceeecccccCceEeCccc
Q 002308 755 PPLNLKELEIHYYGGNTVFPSWMASLTNLK----------SLDLCFCENCEQLPPLGKLPSLEQLFISYMSSVKRVGDEF 824 (938)
Q Consensus 755 ~~~~L~~L~l~~~~~~~~~p~~~~~l~~L~----------~L~L~~~~~~~~l~~l~~l~~L~~L~L~~~~~l~~~~~~~ 824 (938)
.+++|+.|++++|.+.+ +| +..+++|+ .|++++|.....+| ++.+++|+.|++++|..++.+|...
T Consensus 231 ~l~~L~~L~l~~N~l~~-~~--~~~l~~L~~L~l~~n~L~~L~l~~n~~~~~~~-~~~l~~L~~L~Ls~n~~l~~l~~~~ 306 (457)
T 3bz5_A 231 PLTQLTYFDCSVNPLTE-LD--VSTLSKLTTLHCIQTDLLEIDLTHNTQLIYFQ-AEGCRKIKELDVTHNTQLYLLDCQA 306 (457)
T ss_dssp TCTTCSEEECCSSCCSC-CC--CTTCTTCCEEECTTCCCSCCCCTTCTTCCEEE-CTTCTTCCCCCCTTCTTCCEEECTT
T ss_pred ccCCCCEEEeeCCcCCC-cC--HHHCCCCCEEeccCCCCCEEECCCCccCCccc-ccccccCCEEECCCCcccceeccCC
Confidence 88999999999999998 55 33455555 55555555444444 6788999999999999888887432
Q ss_pred ccCCCCCCCCCCCCcccccCCccceeeccccccccccccccccccccccccccccceecccccccccCCC
Q 002308 825 LGVESDRHDSSSSSSVIIAFPKLKSLSIFEMEELEEWDYGITRTGNTFINIMPRLSSLTINYCSKLKALP 894 (938)
Q Consensus 825 ~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~lp 894 (938)
..+..++++ .+++|+.|++.++ +++.++ ++.+++|+.|++++|. ++.+|
T Consensus 307 ---~~L~~L~l~------~~~~L~~L~L~~N-~l~~l~----------l~~l~~L~~L~l~~N~-l~~l~ 355 (457)
T 3bz5_A 307 ---AGITELDLS------QNPKLVYLYLNNT-ELTELD----------VSHNTKLKSLSCVNAH-IQDFS 355 (457)
T ss_dssp ---CCCSCCCCT------TCTTCCEEECTTC-CCSCCC----------CTTCTTCSEEECCSSC-CCBCT
T ss_pred ---CcceEechh------hcccCCEEECCCC-cccccc----------cccCCcCcEEECCCCC-CCCcc
Confidence 233333322 3467777777664 233321 4578999999999864 44443
No 40
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.92 E-value=1.4e-25 Score=263.50 Aligned_cols=305 Identities=14% Similarity=0.078 Sum_probs=247.1
Q ss_pred cccceEEEEccCCCcCccc-ccccCceeEEeccCCCCCCCCchhhHHHHHhccCCCeeEEecCCCCCCcccCccccccCC
Q 002308 515 EKVRHLMLIMGKESTFPIS-TCRAKRIRSLLIEWPEFGHSSLNGEILEELFRESTSLRALDFPSFYLPLEIPRNIEKLVH 593 (938)
Q Consensus 515 ~~~r~l~l~~~~~~~~~~~-~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~n~~~~~lp~~~~~l~~ 593 (938)
..++.+.+.++.+..+|.. +..+++|++|++++|.+. .+++..|..+++|++|+|++|.+.+..|..|+++++
T Consensus 51 ~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~------~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~ 124 (597)
T 3oja_B 51 NNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIE------EIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPL 124 (597)
T ss_dssp CCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCC------EECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTT
T ss_pred CCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCC------CCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCC
Confidence 6788999999988877654 578999999999998762 334445889999999999999977666777899999
Q ss_pred CCeeeecCCcccccccc-ccCCCCccEEEcCCCCCcccccccccccCccceeecCCCcccccCCccCCCCCCCcccCeeE
Q 002308 594 LRYLNLSDQKIKKLPET-LCELYNLEKLDISGCSDLRELPKGIGKLINMKHLLNSGTRSLRYMPVGIGRLTGLRTLGEFH 672 (938)
Q Consensus 594 L~~L~L~~~~i~~lp~~-i~~l~~L~~L~l~~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~ 672 (938)
|++|+|++|.++.+|.. |+++++|++|++++|......|..+..+++|++|++++|.+.. ++ ++.+++|+.|++++
T Consensus 125 L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~-~~--~~~l~~L~~L~l~~ 201 (597)
T 3oja_B 125 LTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTH-VD--LSLIPSLFHANVSY 201 (597)
T ss_dssp CCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSB-CC--GGGCTTCSEEECCS
T ss_pred CCEEEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCC-cC--hhhhhhhhhhhccc
Confidence 99999999999999886 5899999999999999666667789999999999999996543 33 56788999999988
Q ss_pred ecCCCCCCCCcccccccccccccCcceeecCcCCCCChhhhhhhhccCCCcCCceEEEEecCCCCCCCCCccchHHHHhh
Q 002308 673 VSAGGGVDGSKACRLESLKNLEHLQVCCIRRLGDVSDVGEAKLLELDKKKYLSRLRLEFDKKGGGGGRRKNEDDQLLLEA 752 (938)
Q Consensus 673 ~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~ 752 (938)
|.+.. +....+|+.|++++|.+...... ...+|+.|+|++|.+.+ +..
T Consensus 202 n~l~~---------l~~~~~L~~L~ls~n~l~~~~~~----------~~~~L~~L~L~~n~l~~-------------~~~ 249 (597)
T 3oja_B 202 NLLST---------LAIPIAVEELDASHNSINVVRGP----------VNVELTILKLQHNNLTD-------------TAW 249 (597)
T ss_dssp SCCSE---------EECCTTCSEEECCSSCCCEEECS----------CCSCCCEEECCSSCCCC-------------CGG
T ss_pred Ccccc---------ccCCchhheeeccCCcccccccc----------cCCCCCEEECCCCCCCC-------------Chh
Confidence 87654 45567888999988876543221 23589999999998875 256
Q ss_pred CCCCCCCCeEEEeeecCCCCCCCchhccCCCCEEEEecCCCCCcCCCCCCCCccceeecccccCceEeCcccccCCCCCC
Q 002308 753 LQPPLNLKELEIHYYGGNTVFPSWMASLTNLKSLDLCFCENCEQLPPLGKLPSLEQLFISYMSSVKRVGDEFLGVESDRH 832 (938)
Q Consensus 753 l~~~~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~l~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~l~~ 832 (938)
+..+++|+.|++++|.+.+..|..+..+++|+.|+|++|.+....+.++.+|+|+.|+|++|. +..+|..+.
T Consensus 250 l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~Ls~N~-l~~i~~~~~------- 321 (597)
T 3oja_B 250 LLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHNH-LLHVERNQP------- 321 (597)
T ss_dssp GGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSCCCEEECSSSCCTTCCEEECCSSC-CCCCGGGHH-------
T ss_pred hccCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCCCCCCCCcccccCCCCcEEECCCCC-CCccCcccc-------
Confidence 778899999999999999867889999999999999999876654447889999999999997 556665432
Q ss_pred CCCCCCcccccCCccceeeccccccccccccccccccccccccccccceeccccccc
Q 002308 833 DSSSSSSVIIAFPKLKSLSIFEMEELEEWDYGITRTGNTFINIMPRLSSLTINYCSK 889 (938)
Q Consensus 833 ~~~~~~~~~~~~~~L~~L~l~~~~~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~ 889 (938)
.+++|+.|++.++. +..++ +..+++|+.|+|++|+.
T Consensus 322 ----------~l~~L~~L~L~~N~-l~~~~----------~~~~~~L~~L~l~~N~~ 357 (597)
T 3oja_B 322 ----------QFDRLENLYLDHNS-IVTLK----------LSTHHTLKNLTLSHNDW 357 (597)
T ss_dssp ----------HHTTCSEEECCSSC-CCCCC----------CCTTCCCSEEECCSSCE
T ss_pred ----------cCCCCCEEECCCCC-CCCcC----------hhhcCCCCEEEeeCCCC
Confidence 57889999988864 43332 23788999999998764
No 41
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.91 E-value=4.9e-24 Score=254.26 Aligned_cols=152 Identities=16% Similarity=0.149 Sum_probs=127.4
Q ss_pred EeeCCcccccCCCCcccccceEEEEccCCCcCc-ccccccCceeEEeccCCCCCCCCchhhHHHHHhccCCCeeEEecCC
Q 002308 499 LEVNGSEELNVPNSLDEKVRHLMLIMGKESTFP-ISTCRAKRIRSLLIEWPEFGHSSLNGEILEELFRESTSLRALDFPS 577 (938)
Q Consensus 499 ~~~~~~~~~~~~~~~~~~~r~l~l~~~~~~~~~-~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~ 577 (938)
..+.+.....+|...+..+++|++++|.++.++ ..|..+++|++|++++|.+ ..+++.+|.++++|++|+|++
T Consensus 36 ~~c~~~~l~~vP~~lp~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i------~~i~~~~f~~L~~L~~L~Ls~ 109 (635)
T 4g8a_A 36 YQCMELNFYKIPDNLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEI------QTIEDGAYQSLSHLSTLILTG 109 (635)
T ss_dssp EECTTSCCSSCCSSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCC------CEECTTTTTTCTTCCEEECTT
T ss_pred EECCCCCcCccCCCCCcCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcC------CCcChhHhcCCCCCCEEEccC
Confidence 456666666788888899999999999999865 5789999999999999986 345566799999999999999
Q ss_pred CCCCcccCccccccCCCCeeeecCCccccccc-cccCCCCccEEEcCCCCCcc-cccccccccCccceeecCCCcccccC
Q 002308 578 FYLPLEIPRNIEKLVHLRYLNLSDQKIKKLPE-TLCELYNLEKLDISGCSDLR-ELPKGIGKLINMKHLLNSGTRSLRYM 655 (938)
Q Consensus 578 n~~~~~lp~~~~~l~~L~~L~L~~~~i~~lp~-~i~~l~~L~~L~l~~~~~l~-~lp~~i~~l~~L~~L~l~~~~~~~~~ 655 (938)
|.+....+..|+++++|++|+|++|.++.+|. .|+++++|++|++++|.... .+|..+..+++|++|++++|.+....
T Consensus 110 N~l~~l~~~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~ 189 (635)
T 4g8a_A 110 NPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIY 189 (635)
T ss_dssp CCCCEECGGGGTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEEC
T ss_pred CcCCCCCHHHhcCCCCCCEEECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCccccccc
Confidence 99554445678999999999999999998886 58999999999999998543 46788899999999999998654433
Q ss_pred C
Q 002308 656 P 656 (938)
Q Consensus 656 p 656 (938)
|
T Consensus 190 ~ 190 (635)
T 4g8a_A 190 C 190 (635)
T ss_dssp G
T ss_pred c
Confidence 3
No 42
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.90 E-value=3.2e-25 Score=237.70 Aligned_cols=231 Identities=21% Similarity=0.248 Sum_probs=147.3
Q ss_pred hccCCCeeEEecCC-CCCCcccCccccccCCCCeeeecCCccc-cccccccCCCCccEEEcCCCCCcccccccccccCcc
Q 002308 564 FRESTSLRALDFPS-FYLPLEIPRNIEKLVHLRYLNLSDQKIK-KLPETLCELYNLEKLDISGCSDLRELPKGIGKLINM 641 (938)
Q Consensus 564 ~~~~~~Lr~L~L~~-n~~~~~lp~~~~~l~~L~~L~L~~~~i~-~lp~~i~~l~~L~~L~l~~~~~l~~lp~~i~~l~~L 641 (938)
+..+++|++|+|++ |.+.+.+|..|+++++|++|+|++|.++ .+|..+.++++|++|++++|.....+|..+..+++|
T Consensus 72 l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L 151 (313)
T 1ogq_A 72 LANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNL 151 (313)
T ss_dssp GGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTC
T ss_pred HhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCChHHhcCCCC
Confidence 44555555555553 4444445555555555555555555554 455555555555555555555333555555555555
Q ss_pred ceeecCCCcccccCCccCCCCC-CCcccCeeEecCCCCCCCCcccccccccccccCcceeecCcCCCCChhhhhhhhccC
Q 002308 642 KHLLNSGTRSLRYMPVGIGRLT-GLRTLGEFHVSAGGGVDGSKACRLESLKNLEHLQVCCIRRLGDVSDVGEAKLLELDK 720 (938)
Q Consensus 642 ~~L~l~~~~~~~~~p~~l~~l~-~L~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~ 720 (938)
++|++++|.....+|..++.++ +|+.|++++|.+....+ ..+..+. |+.|++++|.+....+. .+..
T Consensus 152 ~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~----~~~~~l~-L~~L~Ls~N~l~~~~~~-------~~~~ 219 (313)
T 1ogq_A 152 VGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIP----PTFANLN-LAFVDLSRNMLEGDASV-------LFGS 219 (313)
T ss_dssp CEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECC----GGGGGCC-CSEEECCSSEEEECCGG-------GCCT
T ss_pred CeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCC----hHHhCCc-ccEEECcCCcccCcCCH-------HHhc
Confidence 5555555544445555555554 55555555554432211 1233333 55566555554433222 4566
Q ss_pred CCcCCceEEEEecCCCCCCCCCccchHHHHhhCCCCCCCCeEEEeeecCCCCCCCchhccCCCCEEEEecCCCCCcCCCC
Q 002308 721 KKYLSRLRLEFDKKGGGGGRRKNEDDQLLLEALQPPLNLKELEIHYYGGNTVFPSWMASLTNLKSLDLCFCENCEQLPPL 800 (938)
Q Consensus 721 ~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~l~~l 800 (938)
+++|+.|++++|.+.. .+..+..+++|++|++++|.+.+.+|.++..+++|+.|+|++|.+.+.+|..
T Consensus 220 l~~L~~L~L~~N~l~~------------~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~ 287 (313)
T 1ogq_A 220 DKNTQKIHLAKNSLAF------------DLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG 287 (313)
T ss_dssp TSCCSEEECCSSEECC------------BGGGCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCS
T ss_pred CCCCCEEECCCCceee------------ecCcccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCC
Confidence 7778888888777654 2334677899999999999998669999999999999999999998888888
Q ss_pred CCCCccceeecccccCce
Q 002308 801 GKLPSLEQLFISYMSSVK 818 (938)
Q Consensus 801 ~~l~~L~~L~L~~~~~l~ 818 (938)
+.+++|+.|++.+|+.+.
T Consensus 288 ~~l~~L~~l~l~~N~~lc 305 (313)
T 1ogq_A 288 GNLQRFDVSAYANNKCLC 305 (313)
T ss_dssp TTGGGSCGGGTCSSSEEE
T ss_pred ccccccChHHhcCCCCcc
Confidence 999999999999998443
No 43
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.90 E-value=5.5e-23 Score=222.97 Aligned_cols=246 Identities=20% Similarity=0.205 Sum_probs=140.3
Q ss_pred cccceEEEEccCCCcCcccccccCceeEEeccCCCCCCCCchhhHHHHHhccCCCeeEEecCCCCCCcccCccccccCCC
Q 002308 515 EKVRHLMLIMGKESTFPISTCRAKRIRSLLIEWPEFGHSSLNGEILEELFRESTSLRALDFPSFYLPLEIPRNIEKLVHL 594 (938)
Q Consensus 515 ~~~r~l~l~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~n~~~~~lp~~~~~l~~L 594 (938)
..++.+.+.++.+..+|..+ .++++.|.+++|.+ ..+++..|..+++|++|+|++|.+....|..++.+++|
T Consensus 33 c~l~~l~~~~~~l~~ip~~~--~~~l~~L~l~~n~i------~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L 104 (332)
T 2ft3_A 33 CHLRVVQCSDLGLKAVPKEI--SPDTTLLDLQNNDI------SELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKL 104 (332)
T ss_dssp EETTEEECCSSCCSSCCSCC--CTTCCEEECCSSCC------CEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTC
T ss_pred ccCCEEECCCCCccccCCCC--CCCCeEEECCCCcC------CccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCC
Confidence 34555666555555555443 24556666555543 12223335555666666666665444345555566666
Q ss_pred CeeeecCCccccccccccCCCCccEEEcCCCCCccccc-ccccccCccceeecCCCcccc--cCCccCCCCCCCcccCee
Q 002308 595 RYLNLSDQKIKKLPETLCELYNLEKLDISGCSDLRELP-KGIGKLINMKHLLNSGTRSLR--YMPVGIGRLTGLRTLGEF 671 (938)
Q Consensus 595 ~~L~L~~~~i~~lp~~i~~l~~L~~L~l~~~~~l~~lp-~~i~~l~~L~~L~l~~~~~~~--~~p~~l~~l~~L~~L~l~ 671 (938)
++|+|++|.++.+|..+. ++|++|++++|. +..+| ..+..+++|++|++++|.... ..|..+..+ +|+.|+
T Consensus 105 ~~L~L~~n~l~~l~~~~~--~~L~~L~l~~n~-i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~-- 178 (332)
T 2ft3_A 105 QKLYISKNHLVEIPPNLP--SSLVELRIHDNR-IRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLR-- 178 (332)
T ss_dssp CEEECCSSCCCSCCSSCC--TTCCEEECCSSC-CCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCB--
T ss_pred CEEECCCCcCCccCcccc--ccCCEEECCCCc-cCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEE--
Confidence 666666666655555444 556666666655 33333 235555666666665554321 233333333 444444
Q ss_pred EecCCCCCCCCcccccccccccccCcceeecCcCCCCChhhhhhhhccCCCcCCceEEEEecCCCCCCCCCccchHHHHh
Q 002308 672 HVSAGGGVDGSKACRLESLKNLEHLQVCCIRRLGDVSDVGEAKLLELDKKKYLSRLRLEFDKKGGGGGRRKNEDDQLLLE 751 (938)
Q Consensus 672 ~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~ 751 (938)
+.+|........ + .++|+.|++++|.+... .+.
T Consensus 179 --------------------------l~~n~l~~l~~~--------~--~~~L~~L~l~~n~i~~~-----------~~~ 211 (332)
T 2ft3_A 179 --------------------------ISEAKLTGIPKD--------L--PETLNELHLDHNKIQAI-----------ELE 211 (332)
T ss_dssp --------------------------CCSSBCSSCCSS--------S--CSSCSCCBCCSSCCCCC-----------CTT
T ss_pred --------------------------CcCCCCCccCcc--------c--cCCCCEEECCCCcCCcc-----------CHH
Confidence 444443321111 0 13556666666655431 124
Q ss_pred hCCCCCCCCeEEEeeecCCCCCCCchhccCCCCEEEEecCCCCCcCCC-CCCCCccceeecccccCceEeCcc
Q 002308 752 ALQPPLNLKELEIHYYGGNTVFPSWMASLTNLKSLDLCFCENCEQLPP-LGKLPSLEQLFISYMSSVKRVGDE 823 (938)
Q Consensus 752 ~l~~~~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~l~~-l~~l~~L~~L~L~~~~~l~~~~~~ 823 (938)
.+..+++|+.|++++|.+....|.++..+++|+.|+|++|.+. .+|. ++.+++|+.|++++|. ++.++..
T Consensus 212 ~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~-l~~~~~~ 282 (332)
T 2ft3_A 212 DLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNN-ITKVGVN 282 (332)
T ss_dssp SSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCC-BCCTTGGGCTTCCEEECCSSC-CCBCCTT
T ss_pred HhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCe-ecChhhhcCccCCEEECCCCC-CCccChh
Confidence 5666778888888888888745557888888999999888766 4554 8888888888888887 5555544
No 44
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.90 E-value=1.3e-23 Score=226.50 Aligned_cols=233 Identities=24% Similarity=0.332 Sum_probs=158.2
Q ss_pred cCCCeeEEecCCCCCCcccCccccccCCCCeeeecCCccccccccccCCCCccEEEcCCCCCcccccccccccCccceee
Q 002308 566 ESTSLRALDFPSFYLPLEIPRNIEKLVHLRYLNLSDQKIKKLPETLCELYNLEKLDISGCSDLRELPKGIGKLINMKHLL 645 (938)
Q Consensus 566 ~~~~Lr~L~L~~n~~~~~lp~~~~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~l~~~~~l~~lp~~i~~l~~L~~L~ 645 (938)
..+.++.|+|++|. ...+|..++++++|++|+|++|.++.+|..++++++|++|++++|. +..+|..+..+++|++|+
T Consensus 79 ~~~~l~~L~L~~n~-l~~lp~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~-l~~lp~~l~~l~~L~~L~ 156 (328)
T 4fcg_A 79 TQPGRVALELRSVP-LPQFPDQAFRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARNP-LRALPASIASLNRLRELS 156 (328)
T ss_dssp TSTTCCEEEEESSC-CSSCCSCGGGGTTCSEEEEESSCCCCCCSCGGGGTTCSEEEEESCC-CCCCCGGGGGCTTCCEEE
T ss_pred cccceeEEEccCCC-chhcChhhhhCCCCCEEECCCCCccchhHHHhccCCCCEEECCCCc-cccCcHHHhcCcCCCEEE
Confidence 45789999999999 5588888999999999999999999999999999999999999998 558888899999999999
Q ss_pred cCCCcccccCCccCCCCCCCcccCeeEecCCCCCCCCcccccccccccccCcceeecCcCCCCChhhhhhhhccCCCcCC
Q 002308 646 NSGTRSLRYMPVGIGRLTGLRTLGEFHVSAGGGVDGSKACRLESLKNLEHLQVCCIRRLGDVSDVGEAKLLELDKKKYLS 725 (938)
Q Consensus 646 l~~~~~~~~~p~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~~~~L~ 725 (938)
+++|.....+|..++.. .... .+..+++|+
T Consensus 157 L~~n~~~~~~p~~~~~~-----------~~~~---------------------------------------~~~~l~~L~ 186 (328)
T 4fcg_A 157 IRACPELTELPEPLAST-----------DASG---------------------------------------EHQGLVNLQ 186 (328)
T ss_dssp EEEETTCCCCCSCSEEE-----------C-CC---------------------------------------CEEESTTCC
T ss_pred CCCCCCccccChhHhhc-----------cchh---------------------------------------hhccCCCCC
Confidence 98887666666544320 0000 122334444
Q ss_pred ceEEEEecCCCCCCCCCccchHHHHhhCCCCCCCCeEEEeeecCCCCCCCchhccCCCCEEEEecCCCCCcCCC-CCCCC
Q 002308 726 RLRLEFDKKGGGGGRRKNEDDQLLLEALQPPLNLKELEIHYYGGNTVFPSWMASLTNLKSLDLCFCENCEQLPP-LGKLP 804 (938)
Q Consensus 726 ~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~l~~-l~~l~ 804 (938)
.|++++|.+.. ++..+..+++|+.|++++|.+.+ +|..+..+++|+.|+|++|.+.+.+|. ++.++
T Consensus 187 ~L~L~~n~l~~------------lp~~l~~l~~L~~L~L~~N~l~~-l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~ 253 (328)
T 4fcg_A 187 SLRLEWTGIRS------------LPASIANLQNLKSLKIRNSPLSA-LGPAIHHLPKLEELDLRGCTALRNYPPIFGGRA 253 (328)
T ss_dssp EEEEEEECCCC------------CCGGGGGCTTCCEEEEESSCCCC-CCGGGGGCTTCCEEECTTCTTCCBCCCCTTCCC
T ss_pred EEECcCCCcCc------------chHhhcCCCCCCEEEccCCCCCc-CchhhccCCCCCEEECcCCcchhhhHHHhcCCC
Confidence 45555544432 23334445555555555555555 555555556666666665555555544 55555
Q ss_pred ccceeecccccCceEeCcccccCCCCCCCCCCCCcccccCCccceeeccccccccccccccccccccccccccccceecc
Q 002308 805 SLEQLFISYMSSVKRVGDEFLGVESDRHDSSSSSSVIIAFPKLKSLSIFEMEELEEWDYGITRTGNTFINIMPRLSSLTI 884 (938)
Q Consensus 805 ~L~~L~L~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~~~~~~~~~~~~~~~~l~~L~~L~l 884 (938)
+|+.|+|++|.....+|. . +..+++|+.|+|
T Consensus 254 ~L~~L~L~~n~~~~~~p~-----------------------------------------~--------~~~l~~L~~L~L 284 (328)
T 4fcg_A 254 PLKRLILKDCSNLLTLPL-----------------------------------------D--------IHRLTQLEKLDL 284 (328)
T ss_dssp CCCEEECTTCTTCCBCCT-----------------------------------------T--------GGGCTTCCEEEC
T ss_pred CCCEEECCCCCchhhcch-----------------------------------------h--------hhcCCCCCEEeC
Confidence 555555555543222221 1 236788888888
Q ss_pred cccccccCCCCCCCCCCCcCEEEEecCc
Q 002308 885 NYCSKLKALPDHIHQTTTLKELRIGECD 912 (938)
Q Consensus 885 ~~c~~l~~lp~~l~~l~~L~~L~l~~c~ 912 (938)
++|+.++.+|..+.++++|+.+++..+.
T Consensus 285 ~~n~~~~~iP~~l~~L~~L~~l~l~~~~ 312 (328)
T 4fcg_A 285 RGCVNLSRLPSLIAQLPANCIILVPPHL 312 (328)
T ss_dssp TTCTTCCCCCGGGGGSCTTCEEECCGGG
T ss_pred CCCCchhhccHHHhhccCceEEeCCHHH
Confidence 8888888888888888888888887554
No 45
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.90 E-value=1.9e-23 Score=226.67 Aligned_cols=292 Identities=16% Similarity=0.133 Sum_probs=178.1
Q ss_pred CeeEEecCCCCCCcccCccccccCCCCeeeecCCcccccc-ccccCCCCccEEEcCCCCCcccccccccccCccceeecC
Q 002308 569 SLRALDFPSFYLPLEIPRNIEKLVHLRYLNLSDQKIKKLP-ETLCELYNLEKLDISGCSDLRELPKGIGKLINMKHLLNS 647 (938)
Q Consensus 569 ~Lr~L~L~~n~~~~~lp~~~~~l~~L~~L~L~~~~i~~lp-~~i~~l~~L~~L~l~~~~~l~~lp~~i~~l~~L~~L~l~ 647 (938)
+|++++++++. ...+|..+. ++|++|+|++|.++.++ ..+.++++|++|++++|......|..+..+++|++|+++
T Consensus 34 ~l~~l~~~~~~-l~~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 110 (332)
T 2ft3_A 34 HLRVVQCSDLG-LKAVPKEIS--PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYIS 110 (332)
T ss_dssp ETTEEECCSSC-CSSCCSCCC--TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECC
T ss_pred cCCEEECCCCC-ccccCCCCC--CCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECC
Confidence 35555555555 334444432 35555555555555443 245555555555555555333334455555555555555
Q ss_pred CCcccccCCccCCCCCCCcccCeeEecCCCCCCCCcccccccccccccCcceeecCcC--CCCChhhhhhhhccCCCcCC
Q 002308 648 GTRSLRYMPVGIGRLTGLRTLGEFHVSAGGGVDGSKACRLESLKNLEHLQVCCIRRLG--DVSDVGEAKLLELDKKKYLS 725 (938)
Q Consensus 648 ~~~~~~~~p~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~--~~~~~~~~~~~~l~~~~~L~ 725 (938)
+|.. ..+|..+. ++|++|++++|.+.... ...+..+++|+.|++.+|.... ..+. .+..+ +|+
T Consensus 111 ~n~l-~~l~~~~~--~~L~~L~l~~n~i~~~~----~~~~~~l~~L~~L~l~~n~l~~~~~~~~-------~~~~l-~L~ 175 (332)
T 2ft3_A 111 KNHL-VEIPPNLP--SSLVELRIHDNRIRKVP----KGVFSGLRNMNCIEMGGNPLENSGFEPG-------AFDGL-KLN 175 (332)
T ss_dssp SSCC-CSCCSSCC--TTCCEEECCSSCCCCCC----SGGGSSCSSCCEEECCSCCCBGGGSCTT-------SSCSC-CCS
T ss_pred CCcC-CccCcccc--ccCCEEECCCCccCccC----HhHhCCCccCCEEECCCCccccCCCCcc-------cccCC-ccC
Confidence 5532 24444333 45555555555444311 1124455556666665554421 1111 34444 889
Q ss_pred ceEEEEecCCCCCCCCCccchHHHHhhCCCCCCCCeEEEeeecCCCCCCCchhccCCCCEEEEecCCCCCcCCC-CCCCC
Q 002308 726 RLRLEFDKKGGGGGRRKNEDDQLLLEALQPPLNLKELEIHYYGGNTVFPSWMASLTNLKSLDLCFCENCEQLPP-LGKLP 804 (938)
Q Consensus 726 ~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~l~~-l~~l~ 804 (938)
.|++++|.+.. ++..+ +++|+.|++++|.+....|..+..+++|+.|+|++|.+....+. ++.++
T Consensus 176 ~L~l~~n~l~~------------l~~~~--~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~ 241 (332)
T 2ft3_A 176 YLRISEAKLTG------------IPKDL--PETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLP 241 (332)
T ss_dssp CCBCCSSBCSS------------CCSSS--CSSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCT
T ss_pred EEECcCCCCCc------------cCccc--cCCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCC
Confidence 99999998765 22222 26899999999999985567888999999999999988776664 88999
Q ss_pred ccceeecccccCceEeCcccccCCCCCCCCCCCCcccccCCccceeeccccccccccccccccccccccccccccceecc
Q 002308 805 SLEQLFISYMSSVKRVGDEFLGVESDRHDSSSSSSVIIAFPKLKSLSIFEMEELEEWDYGITRTGNTFINIMPRLSSLTI 884 (938)
Q Consensus 805 ~L~~L~L~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~~~~~~~~~~~~~~~~l~~L~~L~l 884 (938)
+|+.|++++|. +..+|..+. .+++|+.|++.++ .++.++...-.. ..+...+++|+.|++
T Consensus 242 ~L~~L~L~~N~-l~~lp~~l~-----------------~l~~L~~L~l~~N-~l~~~~~~~~~~-~~~~~~~~~l~~L~l 301 (332)
T 2ft3_A 242 TLRELHLDNNK-LSRVPAGLP-----------------DLKLLQVVYLHTN-NITKVGVNDFCP-VGFGVKRAYYNGISL 301 (332)
T ss_dssp TCCEEECCSSC-CCBCCTTGG-----------------GCTTCCEEECCSS-CCCBCCTTSSSC-SSCCSSSCCBSEEEC
T ss_pred CCCEEECCCCc-CeecChhhh-----------------cCccCCEEECCCC-CCCccChhHccc-cccccccccccceEe
Confidence 99999999997 666665432 6788999999875 355443221100 001113688999999
Q ss_pred cccccc--cCCCCCCCCCCCcCEEEEecCc
Q 002308 885 NYCSKL--KALPDHIHQTTTLKELRIGECD 912 (938)
Q Consensus 885 ~~c~~l--~~lp~~l~~l~~L~~L~l~~c~ 912 (938)
++|+.. ...|..+..+++|+.|++++|+
T Consensus 302 ~~N~~~~~~~~~~~~~~l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 302 FNNPVPYWEVQPATFRCVTDRLAIQFGNYK 331 (332)
T ss_dssp CSSSSCGGGSCGGGGTTBCCSTTEEC----
T ss_pred ecCcccccccCcccccccchhhhhhccccc
Confidence 998754 3456667889999999999886
No 46
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.89 E-value=7.7e-23 Score=221.75 Aligned_cols=251 Identities=16% Similarity=0.101 Sum_probs=145.9
Q ss_pred cccceEEEEccCCCcCcccccccCceeEEeccCCCCCCCCchhhHHHHHhccCCCeeEEecCCCCCCcccCccccccCCC
Q 002308 515 EKVRHLMLIMGKESTFPISTCRAKRIRSLLIEWPEFGHSSLNGEILEELFRESTSLRALDFPSFYLPLEIPRNIEKLVHL 594 (938)
Q Consensus 515 ~~~r~l~l~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~n~~~~~lp~~~~~l~~L 594 (938)
..++.+.+..+.+..+|..+. ++++.|.+++|.+. .+++..|..+++|++|+|++|.+....|..++.+++|
T Consensus 31 c~l~~l~~~~~~l~~lp~~~~--~~l~~L~L~~n~i~------~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L 102 (330)
T 1xku_A 31 CHLRVVQCSDLGLEKVPKDLP--PDTALLDLQNNKIT------EIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKL 102 (330)
T ss_dssp EETTEEECTTSCCCSCCCSCC--TTCCEEECCSSCCC------CBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTC
T ss_pred CCCeEEEecCCCccccCccCC--CCCeEEECCCCcCC------EeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCC
Confidence 345555555555555444332 45666666655542 1222235556666666666666444445556666666
Q ss_pred CeeeecCCccccccccccCCCCccEEEcCCCCCcccccccccccCccceeecCCCcccc--cCCccCCCCCCCcccCeeE
Q 002308 595 RYLNLSDQKIKKLPETLCELYNLEKLDISGCSDLRELPKGIGKLINMKHLLNSGTRSLR--YMPVGIGRLTGLRTLGEFH 672 (938)
Q Consensus 595 ~~L~L~~~~i~~lp~~i~~l~~L~~L~l~~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~--~~p~~l~~l~~L~~L~l~~ 672 (938)
++|+|++|.++.+|..+. ++|++|++++|......+..+..+++|++|++++|.... ..+..+..+++|+.|++.+
T Consensus 103 ~~L~Ls~n~l~~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~ 180 (330)
T 1xku_A 103 ERLYLSKNQLKELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIAD 180 (330)
T ss_dssp CEEECCSSCCSBCCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCS
T ss_pred CEEECCCCcCCccChhhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCC
Confidence 666666666666555443 566666666665333333345556666666666554321 2333444445555554444
Q ss_pred ecCCCCCCCCcccccccccccccCcceeecCcCCCCChhhhhhhhccCCCcCCceEEEEecCCCCCCCCCccchHHHHhh
Q 002308 673 VSAGGGVDGSKACRLESLKNLEHLQVCCIRRLGDVSDVGEAKLLELDKKKYLSRLRLEFDKKGGGGGRRKNEDDQLLLEA 752 (938)
Q Consensus 673 ~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~ 752 (938)
|. ....... + .++|+.|++++|.+.. ..+..
T Consensus 181 n~----------------------------l~~l~~~--------~--~~~L~~L~l~~n~l~~-----------~~~~~ 211 (330)
T 1xku_A 181 TN----------------------------ITTIPQG--------L--PPSLTELHLDGNKITK-----------VDAAS 211 (330)
T ss_dssp SC----------------------------CCSCCSS--------C--CTTCSEEECTTSCCCE-----------ECTGG
T ss_pred Cc----------------------------cccCCcc--------c--cccCCEEECCCCcCCc-----------cCHHH
Confidence 43 3221111 1 1456666666666543 02345
Q ss_pred CCCCCCCCeEEEeeecCCCCCCCchhccCCCCEEEEecCCCCCcCCCCCCCCccceeecccccCceEeCcccc
Q 002308 753 LQPPLNLKELEIHYYGGNTVFPSWMASLTNLKSLDLCFCENCEQLPPLGKLPSLEQLFISYMSSVKRVGDEFL 825 (938)
Q Consensus 753 l~~~~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~l~~l~~l~~L~~L~L~~~~~l~~~~~~~~ 825 (938)
+..+++|+.|++++|.+....+.++..+++|+.|+|++|.+......+..+++|+.|++++|. ++.++...+
T Consensus 212 ~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~L~~L~l~~N~-i~~~~~~~f 283 (330)
T 1xku_A 212 LKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYLHNNN-ISAIGSNDF 283 (330)
T ss_dssp GTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCSSCCTTTTTCSSCCEEECCSSC-CCCCCTTSS
T ss_pred hcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCccCChhhccCCCcCEEECCCCc-CCccChhhc
Confidence 667788888888888888755557888889999999998766433348888999999998887 666655433
No 47
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.89 E-value=2.7e-23 Score=234.07 Aligned_cols=35 Identities=11% Similarity=0.208 Sum_probs=8.5
Q ss_pred cccceEEEEccCCCcCcccccccCceeEEeccCCC
Q 002308 515 EKVRHLMLIMGKESTFPISTCRAKRIRSLLIEWPE 549 (938)
Q Consensus 515 ~~~r~l~l~~~~~~~~~~~~~~~~~Lr~L~l~~~~ 549 (938)
..++.+.++++.+..+|..+.++++|+.|++++|.
T Consensus 11 ~~L~~L~l~~n~l~~iP~~i~~L~~L~~L~l~~n~ 45 (454)
T 1jl5_A 11 TFLQEPLRHSSNLTEMPVEAENVKSKTEYYNAWSE 45 (454)
T ss_dssp -----------------------CCHHHHHHHHHH
T ss_pred ccchhhhcccCchhhCChhHhcccchhhhhccCCc
Confidence 45667777777776677777777777777776664
No 48
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.89 E-value=3e-23 Score=224.99 Aligned_cols=273 Identities=16% Similarity=0.153 Sum_probs=166.5
Q ss_pred CCeeEEecCCCCCCcccCccccccCCCCeeeecCCccccc-cccccCCCCccEEEcCCCCCcccccccccccCccceeec
Q 002308 568 TSLRALDFPSFYLPLEIPRNIEKLVHLRYLNLSDQKIKKL-PETLCELYNLEKLDISGCSDLRELPKGIGKLINMKHLLN 646 (938)
Q Consensus 568 ~~Lr~L~L~~n~~~~~lp~~~~~l~~L~~L~L~~~~i~~l-p~~i~~l~~L~~L~l~~~~~l~~lp~~i~~l~~L~~L~l 646 (938)
+.|++|+|++|.+....+..|+++++|++|+|++|.++.+ |..+.++++|++|++++|. +..+|..+. ++|++|++
T Consensus 52 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~l~~~~~--~~L~~L~l 128 (330)
T 1xku_A 52 PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQ-LKELPEKMP--KTLQELRV 128 (330)
T ss_dssp TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSC-CSBCCSSCC--TTCCEEEC
T ss_pred CCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCCc-CCccChhhc--ccccEEEC
Confidence 3555555555553333333455555555555555555544 4455555555555555555 444554433 45555555
Q ss_pred CCCcccccCCccCCCCCCCcccCeeEecCCCCCCCCcccccccccccccCcceeecCcC--CCCChhhhhhhhccCCCcC
Q 002308 647 SGTRSLRYMPVGIGRLTGLRTLGEFHVSAGGGVDGSKACRLESLKNLEHLQVCCIRRLG--DVSDVGEAKLLELDKKKYL 724 (938)
Q Consensus 647 ~~~~~~~~~p~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~--~~~~~~~~~~~~l~~~~~L 724 (938)
++|......+..+.++++|+.|++ .+|.... ..+ ..+..+++|
T Consensus 129 ~~n~l~~~~~~~~~~l~~L~~L~l----------------------------~~n~l~~~~~~~-------~~~~~l~~L 173 (330)
T 1xku_A 129 HENEITKVRKSVFNGLNQMIVVEL----------------------------GTNPLKSSGIEN-------GAFQGMKKL 173 (330)
T ss_dssp CSSCCCBBCHHHHTTCTTCCEEEC----------------------------CSSCCCGGGBCT-------TGGGGCTTC
T ss_pred CCCcccccCHhHhcCCccccEEEC----------------------------CCCcCCccCcCh-------hhccCCCCc
Confidence 555433333333444444444444 4443321 111 146677888
Q ss_pred CceEEEEecCCCCCCCCCccchHHHHhhCCCCCCCCeEEEeeecCCCCCCCchhccCCCCEEEEecCCCCCcCCC-CCCC
Q 002308 725 SRLRLEFDKKGGGGGRRKNEDDQLLLEALQPPLNLKELEIHYYGGNTVFPSWMASLTNLKSLDLCFCENCEQLPP-LGKL 803 (938)
Q Consensus 725 ~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~l~~-l~~l 803 (938)
+.|++++|.+.. ++..+ +++|+.|++++|.+....|..+..+++|+.|+|++|.+....+. ++.+
T Consensus 174 ~~L~l~~n~l~~------------l~~~~--~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l 239 (330)
T 1xku_A 174 SYIRIADTNITT------------IPQGL--PPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANT 239 (330)
T ss_dssp CEEECCSSCCCS------------CCSSC--CTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGS
T ss_pred CEEECCCCcccc------------CCccc--cccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCC
Confidence 999998888764 22222 27899999999998885678888999999999999987766553 8889
Q ss_pred CccceeecccccCceEeCcccccCCCCCCCCCCCCcccccCCccceeeccccccccccccccccccccccccccccceec
Q 002308 804 PSLEQLFISYMSSVKRVGDEFLGVESDRHDSSSSSSVIIAFPKLKSLSIFEMEELEEWDYGITRTGNTFINIMPRLSSLT 883 (938)
Q Consensus 804 ~~L~~L~L~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~~~~~~~~~~~~~~~~l~~L~~L~ 883 (938)
++|+.|++++|. +..+|..+ ..+++|++|++.++. ++.++...-. ........++|+.|+
T Consensus 240 ~~L~~L~L~~N~-l~~lp~~l-----------------~~l~~L~~L~l~~N~-i~~~~~~~f~-~~~~~~~~~~l~~l~ 299 (330)
T 1xku_A 240 PHLRELHLNNNK-LVKVPGGL-----------------ADHKYIQVVYLHNNN-ISAIGSNDFC-PPGYNTKKASYSGVS 299 (330)
T ss_dssp TTCCEEECCSSC-CSSCCTTT-----------------TTCSSCCEEECCSSC-CCCCCTTSSS-CSSCCTTSCCCSEEE
T ss_pred CCCCEEECCCCc-CccCChhh-----------------ccCCCcCEEECCCCc-CCccChhhcC-CcccccccccccceE
Confidence 999999999997 55665543 257888888888763 4444322110 001112357889999
Q ss_pred cccccccc--CCCCCCCCCCCcCEEEEecCc
Q 002308 884 INYCSKLK--ALPDHIHQTTTLKELRIGECD 912 (938)
Q Consensus 884 l~~c~~l~--~lp~~l~~l~~L~~L~l~~c~ 912 (938)
+++|+... ..|..+..+++|+.+++++|+
T Consensus 300 l~~N~~~~~~i~~~~f~~~~~l~~l~L~~N~ 330 (330)
T 1xku_A 300 LFSNPVQYWEIQPSTFRCVYVRAAVQLGNYK 330 (330)
T ss_dssp CCSSSSCGGGSCGGGGTTCCCGGGEEC----
T ss_pred eecCcccccccCccccccccceeEEEecccC
Confidence 99887532 345567778899999998874
No 49
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.88 E-value=2.4e-23 Score=223.07 Aligned_cols=201 Identities=16% Similarity=0.164 Sum_probs=146.7
Q ss_pred CCeeEEecCCCCCCc--ccCccccccCCCCeeeecC-Cccc-cccccccCCCCccEEEcCCCCCcccccccccccCccce
Q 002308 568 TSLRALDFPSFYLPL--EIPRNIEKLVHLRYLNLSD-QKIK-KLPETLCELYNLEKLDISGCSDLRELPKGIGKLINMKH 643 (938)
Q Consensus 568 ~~Lr~L~L~~n~~~~--~lp~~~~~l~~L~~L~L~~-~~i~-~lp~~i~~l~~L~~L~l~~~~~l~~lp~~i~~l~~L~~ 643 (938)
.+++.|+|++|.+.+ .+|..++++++|++|+|++ |.+. .+|..++++++|++|++++|.....+|..+..+++|++
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~ 129 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVT 129 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCE
T ss_pred ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCE
Confidence 579999999999777 7999999999999999995 7777 88999999999999999999966689999999999999
Q ss_pred eecCCCcccccCCccCCCCCCCcccCeeEecCCCCCCCCccccccccc-ccccCcceeecCcCCCCChhhhhhhhccCCC
Q 002308 644 LLNSGTRSLRYMPVGIGRLTGLRTLGEFHVSAGGGVDGSKACRLESLK-NLEHLQVCCIRRLGDVSDVGEAKLLELDKKK 722 (938)
Q Consensus 644 L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~l~-~L~~L~l~~~~~~~~~~~~~~~~~~~l~~~~ 722 (938)
|++++|.....+|..++.+++|++|++++|.+.+..+ ..+..+. +|+.|++.+|...+..+
T Consensus 130 L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p----~~l~~l~~~L~~L~L~~N~l~~~~~-------------- 191 (313)
T 1ogq_A 130 LDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIP----DSYGSFSKLFTSMTISRNRLTGKIP-------------- 191 (313)
T ss_dssp EECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECC----GGGGCCCTTCCEEECCSSEEEEECC--------------
T ss_pred EeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCC----HHHhhhhhcCcEEECcCCeeeccCC--------------
Confidence 9999998777888889999999999988887653222 2244444 55555555554432222
Q ss_pred cCCceEEEEecCCCCCCCCCccchHHHHhhCCCCCCCCeEEEeeecCCCCCCCchhccCCCCEEEEecCCCCCcCCCCCC
Q 002308 723 YLSRLRLEFDKKGGGGGRRKNEDDQLLLEALQPPLNLKELEIHYYGGNTVFPSWMASLTNLKSLDLCFCENCEQLPPLGK 802 (938)
Q Consensus 723 ~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~l~~l~~ 802 (938)
..+..++ |+.|++++|.+.+..|..+..+++|+.|+|++|.+...+|.+..
T Consensus 192 ----------------------------~~~~~l~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~ 242 (313)
T 1ogq_A 192 ----------------------------PTFANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGL 242 (313)
T ss_dssp ----------------------------GGGGGCC-CSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGGGCCC
T ss_pred ----------------------------hHHhCCc-ccEEECcCCcccCcCCHHHhcCCCCCEEECCCCceeeecCcccc
Confidence 1222222 55566655555544555556666666666666665555555566
Q ss_pred CCccceeeccccc
Q 002308 803 LPSLEQLFISYMS 815 (938)
Q Consensus 803 l~~L~~L~L~~~~ 815 (938)
+++|+.|++++|.
T Consensus 243 l~~L~~L~Ls~N~ 255 (313)
T 1ogq_A 243 SKNLNGLDLRNNR 255 (313)
T ss_dssp CTTCCEEECCSSC
T ss_pred cCCCCEEECcCCc
Confidence 6666666666665
No 50
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.88 E-value=8.1e-23 Score=243.74 Aligned_cols=149 Identities=19% Similarity=0.141 Sum_probs=121.8
Q ss_pred EEEEccCCCcCcccccccCceeEEeccCCCCCCCCchhhHHHHHhccCCCeeEEecCCCCCCcccCccccccCCCCeeee
Q 002308 520 LMLIMGKESTFPISTCRAKRIRSLLIEWPEFGHSSLNGEILEELFRESTSLRALDFPSFYLPLEIPRNIEKLVHLRYLNL 599 (938)
Q Consensus 520 l~l~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~n~~~~~lp~~~~~l~~L~~L~L 599 (938)
++.++.+++.+|..+. ++++.|+|++|.+ ..+++..|.++++|++|+|++|.+....|..|++|++|++|+|
T Consensus 36 ~~c~~~~l~~vP~~lp--~~~~~LdLs~N~i------~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~L 107 (635)
T 4g8a_A 36 YQCMELNFYKIPDNLP--FSTKNLDLSFNPL------RHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLIL 107 (635)
T ss_dssp EECTTSCCSSCCSSSC--TTCCEEECTTSCC------CEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEEC
T ss_pred EECCCCCcCccCCCCC--cCCCEEEeeCCCC------CCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEc
Confidence 3334445666776542 4799999999986 3455666999999999999999955555667999999999999
Q ss_pred cCCccccccc-cccCCCCccEEEcCCCCCccccc-ccccccCccceeecCCCcccc-cCCccCCCCCCCcccCeeEecCC
Q 002308 600 SDQKIKKLPE-TLCELYNLEKLDISGCSDLRELP-KGIGKLINMKHLLNSGTRSLR-YMPVGIGRLTGLRTLGEFHVSAG 676 (938)
Q Consensus 600 ~~~~i~~lp~-~i~~l~~L~~L~l~~~~~l~~lp-~~i~~l~~L~~L~l~~~~~~~-~~p~~l~~l~~L~~L~l~~~~~~ 676 (938)
++|.++.+|. .|.++++|++|++++|. +..+| ..|+++++|++|++++|.... ..|..++.+++|++|++++|.+.
T Consensus 108 s~N~l~~l~~~~f~~L~~L~~L~Ls~N~-l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~ 186 (635)
T 4g8a_A 108 TGNPIQSLALGAFSGLSSLQKLVAVETN-LASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQ 186 (635)
T ss_dssp TTCCCCEECGGGGTTCTTCCEEECTTSC-CCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCC
T ss_pred cCCcCCCCCHHHhcCCCCCCEEECCCCc-CCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCcccc
Confidence 9999999886 58999999999999998 55555 468999999999999997654 46778899999999999988765
Q ss_pred C
Q 002308 677 G 677 (938)
Q Consensus 677 ~ 677 (938)
.
T Consensus 187 ~ 187 (635)
T 4g8a_A 187 S 187 (635)
T ss_dssp E
T ss_pred c
Confidence 4
No 51
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.87 E-value=2.1e-22 Score=226.73 Aligned_cols=250 Identities=18% Similarity=0.095 Sum_probs=126.1
Q ss_pred ccCceeEEeccCCCCCCCCchhhHHHHHhccCCCeeEEecCCCCCCcccCccccccCCC-------------CeeeecCC
Q 002308 536 RAKRIRSLLIEWPEFGHSSLNGEILEELFRESTSLRALDFPSFYLPLEIPRNIEKLVHL-------------RYLNLSDQ 602 (938)
Q Consensus 536 ~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~n~~~~~lp~~~~~l~~L-------------~~L~L~~~ 602 (938)
+.++|+.|.+++|.+ +.+|+. +.++++|++|++++|.+.+.+|..++++.+| ++|++++|
T Consensus 9 ~~~~L~~L~l~~n~l------~~iP~~-i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~ 81 (454)
T 1jl5_A 9 SNTFLQEPLRHSSNL------TEMPVE-AENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNL 81 (454)
T ss_dssp --------------------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTS
T ss_pred ccccchhhhcccCch------hhCChh-HhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhccCCCEEEecCC
Confidence 467899999988875 444444 7889999999999998777888888877654 78888888
Q ss_pred ccccccccccCCCCccEEEcCCCCCccccccccc----------------cc-CccceeecCCCcccccCCccCCCCCCC
Q 002308 603 KIKKLPETLCELYNLEKLDISGCSDLRELPKGIG----------------KL-INMKHLLNSGTRSLRYMPVGIGRLTGL 665 (938)
Q Consensus 603 ~i~~lp~~i~~l~~L~~L~l~~~~~l~~lp~~i~----------------~l-~~L~~L~l~~~~~~~~~p~~l~~l~~L 665 (938)
.++.+|.. .++|++|++++|. +..+|..+. .+ ++|++|++++|... .+| .++++++|
T Consensus 82 ~l~~lp~~---~~~L~~L~l~~n~-l~~lp~~~~~L~~L~l~~n~l~~l~~~~~~L~~L~L~~n~l~-~lp-~~~~l~~L 155 (454)
T 1jl5_A 82 GLSSLPEL---PPHLESLVASCNS-LTELPELPQSLKSLLVDNNNLKALSDLPPLLEYLGVSNNQLE-KLP-ELQNSSFL 155 (454)
T ss_dssp CCSCCCSC---CTTCSEEECCSSC-CSSCCCCCTTCCEEECCSSCCSCCCSCCTTCCEEECCSSCCS-SCC-CCTTCTTC
T ss_pred ccccCCCC---cCCCCEEEccCCc-CCccccccCCCcEEECCCCccCcccCCCCCCCEEECcCCCCC-CCc-ccCCCCCC
Confidence 87777662 3567777777766 334554220 01 34444455444322 244 34555555
Q ss_pred cccCeeEecCCCCCCCCcccccccccccccCcceeecCcCCCCChhhhhhhhccCCCcCCceEEEEecCCCCCCCCCccc
Q 002308 666 RTLGEFHVSAGGGVDGSKACRLESLKNLEHLQVCCIRRLGDVSDVGEAKLLELDKKKYLSRLRLEFDKKGGGGGRRKNED 745 (938)
Q Consensus 666 ~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~ 745 (938)
++|++++|.+.. ++. ...+|+.|++.+|.... .+ .+..+++|+.|++++|.+..
T Consensus 156 ~~L~l~~N~l~~-lp~-------~~~~L~~L~L~~n~l~~-l~--------~~~~l~~L~~L~l~~N~l~~--------- 209 (454)
T 1jl5_A 156 KIIDVDNNSLKK-LPD-------LPPSLEFIAAGNNQLEE-LP--------ELQNLPFLTAIYADNNSLKK--------- 209 (454)
T ss_dssp CEEECCSSCCSC-CCC-------CCTTCCEEECCSSCCSS-CC--------CCTTCTTCCEEECCSSCCSS---------
T ss_pred CEEECCCCcCcc-cCC-------CcccccEEECcCCcCCc-Cc--------cccCCCCCCEEECCCCcCCc---------
Confidence 555555544432 111 11245555554444332 11 24556666666666665543
Q ss_pred hHHHHhhCCCCCCCCeEEEeeecCCCCCCCchhccCCCCEEEEecCCCCCcCCCCCCCCccceeecccccCceEeCcccc
Q 002308 746 DQLLLEALQPPLNLKELEIHYYGGNTVFPSWMASLTNLKSLDLCFCENCEQLPPLGKLPSLEQLFISYMSSVKRVGDEFL 825 (938)
Q Consensus 746 ~~~~~~~l~~~~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~l~~l~~l~~L~~L~L~~~~~l~~~~~~~~ 825 (938)
++ ..+++|+.|++++|.+.. +|. +..+++|+.|++++|.+.. +|. .+++|+.|++++|. +..+|..
T Consensus 210 ---l~---~~~~~L~~L~l~~n~l~~-lp~-~~~l~~L~~L~l~~N~l~~-l~~--~~~~L~~L~l~~N~-l~~l~~~-- 275 (454)
T 1jl5_A 210 ---LP---DLPLSLESIVAGNNILEE-LPE-LQNLPFLTTIYADNNLLKT-LPD--LPPSLEALNVRDNY-LTDLPEL-- 275 (454)
T ss_dssp ---CC---CCCTTCCEEECCSSCCSS-CCC-CTTCTTCCEEECCSSCCSS-CCS--CCTTCCEEECCSSC-CSCCCCC--
T ss_pred ---CC---CCcCcccEEECcCCcCCc-ccc-cCCCCCCCEEECCCCcCCc-ccc--cccccCEEECCCCc-ccccCcc--
Confidence 11 112467777777777765 664 6677777777777776543 332 23566666666655 3334432
Q ss_pred cCCCCCCCCCCCCc
Q 002308 826 GVESDRHDSSSSSS 839 (938)
Q Consensus 826 ~~~~l~~~~~~~~~ 839 (938)
...++.++++.|.
T Consensus 276 -~~~L~~L~ls~N~ 288 (454)
T 1jl5_A 276 -PQSLTFLDVSENI 288 (454)
T ss_dssp -CTTCCEEECCSSC
T ss_pred -cCcCCEEECcCCc
Confidence 1334444444444
No 52
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.87 E-value=2.5e-22 Score=216.52 Aligned_cols=222 Identities=22% Similarity=0.316 Sum_probs=157.9
Q ss_pred CceeEEeccCCCCCCCCchhhHHHHHhccCCCeeEEecCCCCCCcccCccccccCCCCeeeecCCccccccccccCCCCc
Q 002308 538 KRIRSLLIEWPEFGHSSLNGEILEELFRESTSLRALDFPSFYLPLEIPRNIEKLVHLRYLNLSDQKIKKLPETLCELYNL 617 (938)
Q Consensus 538 ~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~n~~~~~lp~~~~~l~~L~~L~L~~~~i~~lp~~i~~l~~L 617 (938)
++++.|.+.+|.+. .+++. +..+++|++|+|++|.+. .+|..++.+++|++|+|++|.++.+|..++++++|
T Consensus 81 ~~l~~L~L~~n~l~------~lp~~-l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L 152 (328)
T 4fcg_A 81 PGRVALELRSVPLP------QFPDQ-AFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLRALPASIASLNRL 152 (328)
T ss_dssp TTCCEEEEESSCCS------SCCSC-GGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCCCCCGGGGGCTTC
T ss_pred cceeEEEccCCCch------hcChh-hhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccccCcHHHhcCcCC
Confidence 44555555555442 12222 445778888888888844 78888888889999999988888888888888999
Q ss_pred cEEEcCCCCCcccccccccc---------cCccceeecCCCcccccCCccCCCCCCCcccCeeEecCCCCCCCCcccccc
Q 002308 618 EKLDISGCSDLRELPKGIGK---------LINMKHLLNSGTRSLRYMPVGIGRLTGLRTLGEFHVSAGGGVDGSKACRLE 688 (938)
Q Consensus 618 ~~L~l~~~~~l~~lp~~i~~---------l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~ 688 (938)
++|++++|.....+|..+.. +++|++|++++|.+. .+|..++++++|+.|++++|.+.. ....+.
T Consensus 153 ~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~~-----l~~~l~ 226 (328)
T 4fcg_A 153 RELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLSA-----LGPAIH 226 (328)
T ss_dssp CEEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCCC-----CCGGGG
T ss_pred CEEECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCCc-----Cchhhc
Confidence 99999888878888877654 777777877777444 667777777777777777766553 112244
Q ss_pred cccccccCcceeecCcCCCCChhhhhhhhccCCCcCCceEEEEecCCCCCCCCCccchHHHHhhCCCCCCCCeEEEeeec
Q 002308 689 SLKNLEHLQVCCIRRLGDVSDVGEAKLLELDKKKYLSRLRLEFDKKGGGGGRRKNEDDQLLLEALQPPLNLKELEIHYYG 768 (938)
Q Consensus 689 ~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~ 768 (938)
.+++|+.|++++|...+. ++..+..+++|+.|++++|.
T Consensus 227 ~l~~L~~L~Ls~n~~~~~------------------------------------------~p~~~~~l~~L~~L~L~~n~ 264 (328)
T 4fcg_A 227 HLPKLEELDLRGCTALRN------------------------------------------YPPIFGGRAPLKRLILKDCS 264 (328)
T ss_dssp GCTTCCEEECTTCTTCCB------------------------------------------CCCCTTCCCCCCEEECTTCT
T ss_pred cCCCCCEEECcCCcchhh------------------------------------------hHHHhcCCCCCCEEECCCCC
Confidence 445555555444433322 22345566788888888887
Q ss_pred CCCCCCCchhccCCCCEEEEecCCCCCcCCC-CCCCCccceeeccccc
Q 002308 769 GNTVFPSWMASLTNLKSLDLCFCENCEQLPP-LGKLPSLEQLFISYMS 815 (938)
Q Consensus 769 ~~~~~p~~~~~l~~L~~L~L~~~~~~~~l~~-l~~l~~L~~L~L~~~~ 815 (938)
+.+.+|.++..+++|+.|+|++|.+.+.+|. ++++++|+.+++..+.
T Consensus 265 ~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~~ 312 (328)
T 4fcg_A 265 NLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHL 312 (328)
T ss_dssp TCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGGG
T ss_pred chhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCHHH
Confidence 7777888888888888888888888888876 8888888888887654
No 53
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.84 E-value=1e-21 Score=215.06 Aligned_cols=268 Identities=15% Similarity=0.085 Sum_probs=195.7
Q ss_pred EEEEccCCCcCcccccccCceeEEeccCCCCCCCCchhhHHHHHhccCCCeeEEecCCCCCCcccCccccccCCCCeeee
Q 002308 520 LMLIMGKESTFPISTCRAKRIRSLLIEWPEFGHSSLNGEILEELFRESTSLRALDFPSFYLPLEIPRNIEKLVHLRYLNL 599 (938)
Q Consensus 520 l~l~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~n~~~~~lp~~~~~l~~L~~L~L 599 (938)
.+.+++.++.+|..+. ++|+.|++++|.+. .+++..|..+++|++|+|++|.+....|..|+++++|++|+|
T Consensus 36 c~~~~~~l~~iP~~~~--~~L~~L~l~~n~i~------~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 107 (353)
T 2z80_A 36 CKGSSGSLNSIPSGLT--EAVKSLDLSNNRIT------YISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDL 107 (353)
T ss_dssp EECCSTTCSSCCTTCC--TTCCEEECTTSCCC------EECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEC
T ss_pred eeCCCCCccccccccc--ccCcEEECCCCcCc------ccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEEC
Confidence 5556667776776543 58888888888752 334445788889999999999866555677888999999999
Q ss_pred cCCcccccccc-ccCCCCccEEEcCCCCCcccccc--cccccCccceeecCCCccccc-CCccCCCCCCCcccCeeEecC
Q 002308 600 SDQKIKKLPET-LCELYNLEKLDISGCSDLRELPK--GIGKLINMKHLLNSGTRSLRY-MPVGIGRLTGLRTLGEFHVSA 675 (938)
Q Consensus 600 ~~~~i~~lp~~-i~~l~~L~~L~l~~~~~l~~lp~--~i~~l~~L~~L~l~~~~~~~~-~p~~l~~l~~L~~L~l~~~~~ 675 (938)
++|.++.+|.. +.++++|++|++++|. +..+|. .+..+++|++|++++|..... .|..++.+++|++|++++|.+
T Consensus 108 s~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l 186 (353)
T 2z80_A 108 SYNYLSNLSSSWFKPLSSLTFLNLLGNP-YKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDL 186 (353)
T ss_dssp CSSCCSSCCHHHHTTCTTCSEEECTTCC-CSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTC
T ss_pred CCCcCCcCCHhHhCCCccCCEEECCCCC-CcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCc
Confidence 99998888876 7889999999999987 556765 678889999999988854444 456688888999999988877
Q ss_pred CCCCCCCcccccccccccccCcceeecCcCCCCChhhhhhhhccCCCcCCceEEEEecCCCCCCCCCccchHHHHhhCCC
Q 002308 676 GGGVDGSKACRLESLKNLEHLQVCCIRRLGDVSDVGEAKLLELDKKKYLSRLRLEFDKKGGGGGRRKNEDDQLLLEALQP 755 (938)
Q Consensus 676 ~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~ 755 (938)
....+ ..+..+++|+.|++.+|..... . ...+..+++|+.|++++|.+...... .......
T Consensus 187 ~~~~~----~~l~~l~~L~~L~l~~n~l~~~----~---~~~~~~~~~L~~L~L~~n~l~~~~~~--------~l~~~~~ 247 (353)
T 2z80_A 187 QSYEP----KSLKSIQNVSHLILHMKQHILL----L---EIFVDVTSSVECLELRDTDLDTFHFS--------ELSTGET 247 (353)
T ss_dssp CEECT----TTTTTCSEEEEEEEECSCSTTH----H---HHHHHHTTTEEEEEEESCBCTTCCCC--------------C
T ss_pred CccCH----HHHhccccCCeecCCCCccccc----h---hhhhhhcccccEEECCCCcccccccc--------ccccccc
Confidence 65322 2367788888888887765221 1 11234578899999999887652100 0112234
Q ss_pred CCCCCeEEEeeecCCCC----CCCchhccCCCCEEEEecCCCCCcCCC-CCCCCccceeeccccc
Q 002308 756 PLNLKELEIHYYGGNTV----FPSWMASLTNLKSLDLCFCENCEQLPP-LGKLPSLEQLFISYMS 815 (938)
Q Consensus 756 ~~~L~~L~l~~~~~~~~----~p~~~~~l~~L~~L~L~~~~~~~~l~~-l~~l~~L~~L~L~~~~ 815 (938)
.+.++.+++.++.+.+. +|.++..+++|+.|+|++|.+....+. ++.+++|+.|++++|+
T Consensus 248 ~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~ 312 (353)
T 2z80_A 248 NSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTNP 312 (353)
T ss_dssp CCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred cchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCCCCccCHHHHhcCCCCCEEEeeCCC
Confidence 56788888888877652 677788999999999999987743333 6899999999999987
No 54
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.84 E-value=2.5e-24 Score=245.73 Aligned_cols=372 Identities=17% Similarity=0.053 Sum_probs=233.1
Q ss_pred cccceEEEEccCCCcCc--ccccccCceeEEeccCCCCCCCCchhhHHHHHhccCCCeeEEecCCCCCCcccCcccc-cc
Q 002308 515 EKVRHLMLIMGKESTFP--ISTCRAKRIRSLLIEWPEFGHSSLNGEILEELFRESTSLRALDFPSFYLPLEIPRNIE-KL 591 (938)
Q Consensus 515 ~~~r~l~l~~~~~~~~~--~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~n~~~~~lp~~~~-~l 591 (938)
+.+++++++++.+.... ..+..+++|++|.+++|.+.... ....+..+..+++|++|+|++|.+....+..+. .+
T Consensus 3 ~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~--~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l 80 (461)
T 1z7x_W 3 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEAR--CKDISSALRVNPALAELNLRSNELGDVGVHCVLQGL 80 (461)
T ss_dssp EEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHH--HHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTT
T ss_pred ccceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHH--HHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHH
Confidence 67889999998887633 33678899999999988763211 112455678889999999999985443333333 34
Q ss_pred C----CCCeeeecCCccc-----cccccccCCCCccEEEcCCCCCccccccccc-----ccCccceeecCCCccccc---
Q 002308 592 V----HLRYLNLSDQKIK-----KLPETLCELYNLEKLDISGCSDLRELPKGIG-----KLINMKHLLNSGTRSLRY--- 654 (938)
Q Consensus 592 ~----~L~~L~L~~~~i~-----~lp~~i~~l~~L~~L~l~~~~~l~~lp~~i~-----~l~~L~~L~l~~~~~~~~--- 654 (938)
. +|++|+|++|.++ .+|..+..+++|++|++++|......+..+. ..++|++|++++|.....
T Consensus 81 ~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~ 160 (461)
T 1z7x_W 81 QTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCE 160 (461)
T ss_dssp CSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHH
T ss_pred hhCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHH
Confidence 4 6999999999987 5688899999999999999984433333222 256799999999966542
Q ss_pred -CCccCCCCCCCcccCeeEecCCCCCCCCcccccc-cccccccCcceeecCcCCCCChhhhhhhhccCCCcCCceEEEEe
Q 002308 655 -MPVGIGRLTGLRTLGEFHVSAGGGVDGSKACRLE-SLKNLEHLQVCCIRRLGDVSDVGEAKLLELDKKKYLSRLRLEFD 732 (938)
Q Consensus 655 -~p~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~-~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~ 732 (938)
++..+..+++|++|++++|.+.......+...+. ..++|+.|++.+|..... ........+..+++|+.|++++|
T Consensus 161 ~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~---~~~~l~~~l~~~~~L~~L~Ls~n 237 (461)
T 1z7x_W 161 PLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSD---NCRDLCGIVASKASLRELALGSN 237 (461)
T ss_dssp HHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTT---HHHHHHHHHHHCTTCCEEECCSS
T ss_pred HHHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHH---HHHHHHHHHHhCCCccEEeccCC
Confidence 3555677889999999888754311111001111 245888898888765432 11223335667889999999998
Q ss_pred cCCCCCCCCCccchHHHHh-hCCCCCCCCeEEEeeecCCCC----CCCchhccCCCCEEEEecCCCCCcCC----C--CC
Q 002308 733 KKGGGGGRRKNEDDQLLLE-ALQPPLNLKELEIHYYGGNTV----FPSWMASLTNLKSLDLCFCENCEQLP----P--LG 801 (938)
Q Consensus 733 ~~~~~~~~~~~~~~~~~~~-~l~~~~~L~~L~l~~~~~~~~----~p~~~~~l~~L~~L~L~~~~~~~~l~----~--l~ 801 (938)
.+.+ .....+.. ....+++|++|++++|.++.. ++..+..+++|+.|+|++|.+.+..+ . ..
T Consensus 238 ~l~~-------~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~ 310 (461)
T 1z7x_W 238 KLGD-------VGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLE 310 (461)
T ss_dssp BCHH-------HHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTS
T ss_pred cCCh-------HHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhcc
Confidence 7653 11112222 344678999999999987763 45666778999999999997643211 1 23
Q ss_pred CCCccceeecccccCceEeCcccccCCCCCCCCCCCCcccccCCccceeeccccccccccccccccccccccccccccce
Q 002308 802 KLPSLEQLFISYMSSVKRVGDEFLGVESDRHDSSSSSSVIIAFPKLKSLSIFEMEELEEWDYGITRTGNTFINIMPRLSS 881 (938)
Q Consensus 802 ~l~~L~~L~L~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~~~~~~~~~~~~~~~~l~~L~~ 881 (938)
..++|+.|++++|. +...+...+.. ....+++|+.|+++++. +...... .....+....++|+.
T Consensus 311 ~~~~L~~L~L~~n~-l~~~~~~~l~~------------~l~~~~~L~~L~Ls~n~-i~~~~~~--~l~~~l~~~~~~L~~ 374 (461)
T 1z7x_W 311 PGCQLESLWVKSCS-FTAACCSHFSS------------VLAQNRFLLELQISNNR-LEDAGVR--ELCQGLGQPGSVLRV 374 (461)
T ss_dssp TTCCCCEEECTTSC-CBGGGHHHHHH------------HHHHCSSCCEEECCSSB-CHHHHHH--HHHHHHTSTTCCCCE
T ss_pred CCccceeeEcCCCC-CchHHHHHHHH------------HHhhCCCccEEEccCCc-cccccHH--HHHHHHcCCCCceEE
Confidence 44789999999987 33221100000 01234667777766652 2221100 000000012457777
Q ss_pred eccccccccc----CCCCCCCCCCCcCEEEEecCcch
Q 002308 882 LTINYCSKLK----ALPDHIHQTTTLKELRIGECDLL 914 (938)
Q Consensus 882 L~l~~c~~l~----~lp~~l~~l~~L~~L~l~~c~~l 914 (938)
|++++|..-. .+|..+..+++|++|++++|+.-
T Consensus 375 L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N~i~ 411 (461)
T 1z7x_W 375 LWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLG 411 (461)
T ss_dssp EECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCC
T ss_pred EECCCCCCChhhHHHHHHHHHhCCCccEEECCCCCCC
Confidence 7777764321 45555556677777777777643
No 55
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.84 E-value=2.6e-20 Score=215.87 Aligned_cols=259 Identities=19% Similarity=0.168 Sum_probs=175.1
Q ss_pred CeeEEecCCCCCCcccCccccccCCCCeeeecCCccccccccccCCCCccEEEcCCCCCcccccccccccCccceeecCC
Q 002308 569 SLRALDFPSFYLPLEIPRNIEKLVHLRYLNLSDQKIKKLPETLCELYNLEKLDISGCSDLRELPKGIGKLINMKHLLNSG 648 (938)
Q Consensus 569 ~Lr~L~L~~n~~~~~lp~~~~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~l~~~~~l~~lp~~i~~l~~L~~L~l~~ 648 (938)
.+++|++++|. ...+|..+. ++|++|+|++|.++.+|. .+++|++|++++|. +..+|. .+++|++|++++
T Consensus 41 ~l~~L~ls~n~-L~~lp~~l~--~~L~~L~L~~N~l~~lp~---~l~~L~~L~Ls~N~-l~~lp~---~l~~L~~L~Ls~ 110 (622)
T 3g06_A 41 GNAVLNVGESG-LTTLPDCLP--AHITTLVIPDNNLTSLPA---LPPELRTLEVSGNQ-LTSLPV---LPPGLLELSIFS 110 (622)
T ss_dssp CCCEEECCSSC-CSCCCSCCC--TTCSEEEECSCCCSCCCC---CCTTCCEEEECSCC-CSCCCC---CCTTCCEEEECS
T ss_pred CCcEEEecCCC-cCccChhhC--CCCcEEEecCCCCCCCCC---cCCCCCEEEcCCCc-CCcCCC---CCCCCCEEECcC
Confidence 46777777777 446666554 577777777777777766 46677777777776 555665 567777777777
Q ss_pred CcccccCCccCCCCCCCcccCeeEecCCCCCCCCcccccccccccccCcceeecCcCCCCChhhhhhhhccCCCcCCceE
Q 002308 649 TRSLRYMPVGIGRLTGLRTLGEFHVSAGGGVDGSKACRLESLKNLEHLQVCCIRRLGDVSDVGEAKLLELDKKKYLSRLR 728 (938)
Q Consensus 649 ~~~~~~~p~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~ 728 (938)
|.+ ..+|. .+++|+.|++++|.+... +. .+++|+.|++++|.+..... ...+|+.|+
T Consensus 111 N~l-~~l~~---~l~~L~~L~L~~N~l~~l-p~-------~l~~L~~L~Ls~N~l~~l~~-----------~~~~L~~L~ 167 (622)
T 3g06_A 111 NPL-THLPA---LPSGLCKLWIFGNQLTSL-PV-------LPPGLQELSVSDNQLASLPA-----------LPSELCKLW 167 (622)
T ss_dssp CCC-CCCCC---CCTTCCEEECCSSCCSCC-CC-------CCTTCCEEECCSSCCSCCCC-----------CCTTCCEEE
T ss_pred CcC-CCCCC---CCCCcCEEECCCCCCCcC-CC-------CCCCCCEEECcCCcCCCcCC-----------ccCCCCEEE
Confidence 633 34444 456677777776665541 11 23667777777665543211 235677788
Q ss_pred EEEecCCCCCCCCCccchHHHHhhCCCCCCCCeEEEeeecCCCCCCCchhccCCCCEEEEecCCCCCcCCCCCCCCccce
Q 002308 729 LEFDKKGGGGGRRKNEDDQLLLEALQPPLNLKELEIHYYGGNTVFPSWMASLTNLKSLDLCFCENCEQLPPLGKLPSLEQ 808 (938)
Q Consensus 729 L~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~l~~l~~l~~L~~ 808 (938)
+++|.+.. ++ ..+++|+.|++++|.+.+ +|.. +++|+.|++++|.+. .+|. .+++|+.
T Consensus 168 L~~N~l~~------------l~---~~~~~L~~L~Ls~N~l~~-l~~~---~~~L~~L~L~~N~l~-~l~~--~~~~L~~ 225 (622)
T 3g06_A 168 AYNNQLTS------------LP---MLPSGLQELSVSDNQLAS-LPTL---PSELYKLWAYNNRLT-SLPA--LPSGLKE 225 (622)
T ss_dssp CCSSCCSC------------CC---CCCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCS-SCCC--CCTTCCE
T ss_pred CCCCCCCC------------Cc---ccCCCCcEEECCCCCCCC-CCCc---cchhhEEECcCCccc-ccCC--CCCCCCE
Confidence 88777664 22 345788888888888887 6653 478888888888655 3443 3478888
Q ss_pred eecccccCceEeCcccccCCCCCCCCCCCCcccccCCccceeeccccccccccccccccccccccccccccceecccccc
Q 002308 809 LFISYMSSVKRVGDEFLGVESDRHDSSSSSSVIIAFPKLKSLSIFEMEELEEWDYGITRTGNTFINIMPRLSSLTINYCS 888 (938)
Q Consensus 809 L~L~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~ 888 (938)
|++++|. ++.+| ..+++|+.|+++++ +++.++. .+++|+.|+|++|
T Consensus 226 L~Ls~N~-L~~lp--------------------~~l~~L~~L~Ls~N-~L~~lp~-----------~~~~L~~L~Ls~N- 271 (622)
T 3g06_A 226 LIVSGNR-LTSLP--------------------VLPSELKELMVSGN-RLTSLPM-----------LPSGLLSLSVYRN- 271 (622)
T ss_dssp EECCSSC-CSCCC--------------------CCCTTCCEEECCSS-CCSCCCC-----------CCTTCCEEECCSS-
T ss_pred EEccCCc-cCcCC--------------------CCCCcCcEEECCCC-CCCcCCc-----------ccccCcEEeCCCC-
Confidence 8888886 44444 14678888888876 4544432 4688999999986
Q ss_pred cccCCCCCCCCCCCcCEEEEecCcchHH
Q 002308 889 KLKALPDHIHQTTTLKELRIGECDLLEE 916 (938)
Q Consensus 889 ~l~~lp~~l~~l~~L~~L~l~~c~~l~~ 916 (938)
.++.+|..+.++++|+.|++++|+....
T Consensus 272 ~L~~lp~~l~~l~~L~~L~L~~N~l~~~ 299 (622)
T 3g06_A 272 QLTRLPESLIHLSSETTVNLEGNPLSER 299 (622)
T ss_dssp CCCSCCGGGGGSCTTCEEECCSCCCCHH
T ss_pred CCCcCCHHHhhccccCEEEecCCCCCCc
Confidence 5678888888899999999999986543
No 56
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.84 E-value=1.6e-21 Score=213.49 Aligned_cols=278 Identities=18% Similarity=0.172 Sum_probs=217.9
Q ss_pred ccccCCCCcccccceEEEEccCCCcCcc-cccccCceeEEeccCCCCCCCCchhhHHHHHhccCCCeeEEecCCCCCCcc
Q 002308 505 EELNVPNSLDEKVRHLMLIMGKESTFPI-STCRAKRIRSLLIEWPEFGHSSLNGEILEELFRESTSLRALDFPSFYLPLE 583 (938)
Q Consensus 505 ~~~~~~~~~~~~~r~l~l~~~~~~~~~~-~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~n~~~~~ 583 (938)
....+|...++.++.+++++|.+...+. .+..+++|++|.+++|.+. .+++..|..+++|++|+|++|.+. .
T Consensus 42 ~l~~iP~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~------~~~~~~~~~l~~L~~L~Ls~n~l~-~ 114 (353)
T 2z80_A 42 SLNSIPSGLTEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGIN------TIEEDSFSSLGSLEHLDLSYNYLS-N 114 (353)
T ss_dssp TCSSCCTTCCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCC------EECTTTTTTCTTCCEEECCSSCCS-S
T ss_pred CcccccccccccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccC------ccCHhhcCCCCCCCEEECCCCcCC-c
Confidence 3345566777899999999999988665 7889999999999998763 334455889999999999999954 4
Q ss_pred cCcc-ccccCCCCeeeecCCccccccc--cccCCCCccEEEcCCCCCcccc-cccccccCccceeecCCCcccccCCccC
Q 002308 584 IPRN-IEKLVHLRYLNLSDQKIKKLPE--TLCELYNLEKLDISGCSDLREL-PKGIGKLINMKHLLNSGTRSLRYMPVGI 659 (938)
Q Consensus 584 lp~~-~~~l~~L~~L~L~~~~i~~lp~--~i~~l~~L~~L~l~~~~~l~~l-p~~i~~l~~L~~L~l~~~~~~~~~p~~l 659 (938)
+|.. ++++++|++|++++|.++.+|. .+.++++|++|++++|..+..+ |..+..+++|++|++++|......|..+
T Consensus 115 ~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l 194 (353)
T 2z80_A 115 LSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSL 194 (353)
T ss_dssp CCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTT
T ss_pred CCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHHH
Confidence 5544 8999999999999999999987 7899999999999999645555 5678999999999999998777778899
Q ss_pred CCCCCCcccCeeEecCCCCCCCCcccccccccccccCcceeecCcCCCCChhhhhhhhccCCCcCCceEEEEecCCCCCC
Q 002308 660 GRLTGLRTLGEFHVSAGGGVDGSKACRLESLKNLEHLQVCCIRRLGDVSDVGEAKLLELDKKKYLSRLRLEFDKKGGGGG 739 (938)
Q Consensus 660 ~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~ 739 (938)
+.+++|++|++.+|.+.... ...+..+++|+.|++.+|........ ..........++.++++.+.+.+
T Consensus 195 ~~l~~L~~L~l~~n~l~~~~----~~~~~~~~~L~~L~L~~n~l~~~~~~----~l~~~~~~~~l~~l~L~~~~l~~--- 263 (353)
T 2z80_A 195 KSIQNVSHLILHMKQHILLL----EIFVDVTSSVECLELRDTDLDTFHFS----ELSTGETNSLIKKFTFRNVKITD--- 263 (353)
T ss_dssp TTCSEEEEEEEECSCSTTHH----HHHHHHTTTEEEEEEESCBCTTCCCC----------CCCCCCEEEEESCBCCH---
T ss_pred hccccCCeecCCCCccccch----hhhhhhcccccEEECCCCcccccccc----ccccccccchhhccccccccccC---
Confidence 99999999999998875411 11244578999999999887654332 11123456778899999887754
Q ss_pred CCCccchHHHHhhCCCCCCCCeEEEeeecCCCCCCCch-hccCCCCEEEEecCCCCCcCCCCCCCCccceeec
Q 002308 740 RRKNEDDQLLLEALQPPLNLKELEIHYYGGNTVFPSWM-ASLTNLKSLDLCFCENCEQLPPLGKLPSLEQLFI 811 (938)
Q Consensus 740 ~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~p~~~-~~l~~L~~L~L~~~~~~~~l~~l~~l~~L~~L~L 811 (938)
.....++..+..+++|+.|++++|.+.. +|..+ ..+++|+.|+|++|++.. .++.+..|..
T Consensus 264 ----~~l~~l~~~l~~l~~L~~L~Ls~N~l~~-i~~~~~~~l~~L~~L~L~~N~~~~------~~~~l~~l~~ 325 (353)
T 2z80_A 264 ----ESLFQVMKLLNQISGLLELEFSRNQLKS-VPDGIFDRLTSLQKIWLHTNPWDC------SCPRIDYLSR 325 (353)
T ss_dssp ----HHHHHHHHHHHTCTTCCEEECCSSCCCC-CCTTTTTTCTTCCEEECCSSCBCC------CHHHHHHHHH
T ss_pred ----cchhhhHHHHhcccCCCEEECCCCCCCc-cCHHHHhcCCCCCEEEeeCCCccC------cCCCcHHHHH
Confidence 2233567778889999999999999997 88774 799999999999997653 3344555443
No 57
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.83 E-value=6.3e-21 Score=204.31 Aligned_cols=243 Identities=19% Similarity=0.113 Sum_probs=153.8
Q ss_pred eEEEEccCCCcCcccccccCceeEEeccCCCCCCCCchhhHHHHHhccCCCeeEEecCCCCCCc--ccCccccccCCCCe
Q 002308 519 HLMLIMGKESTFPISTCRAKRIRSLLIEWPEFGHSSLNGEILEELFRESTSLRALDFPSFYLPL--EIPRNIEKLVHLRY 596 (938)
Q Consensus 519 ~l~l~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~n~~~~--~lp~~~~~l~~L~~ 596 (938)
.+....+.++.+|..+. ++++.|.+.+|.+. .++..+|..+++|++|+|++|.+.. ..|..+..+++|++
T Consensus 11 ~l~c~~~~l~~ip~~~~--~~l~~L~L~~n~l~------~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~ 82 (306)
T 2z66_A 11 EIRCNSKGLTSVPTGIP--SSATRLELESNKLQ------SLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKY 82 (306)
T ss_dssp EEECCSSCCSSCCSCCC--TTCCEEECCSSCCC------CCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCE
T ss_pred EEEcCCCCcccCCCCCC--CCCCEEECCCCccC------ccCHhHhhccccCCEEECCCCccCcccCcccccccccccCE
Confidence 45555555555555432 56777777666542 2333446667777777777776331 12455556677777
Q ss_pred eeecCCccccccccccCCCCccEEEcCCCCCccccc--ccccccCccceeecCCCcccccCCccCCCCCCCcccCeeEec
Q 002308 597 LNLSDQKIKKLPETLCELYNLEKLDISGCSDLRELP--KGIGKLINMKHLLNSGTRSLRYMPVGIGRLTGLRTLGEFHVS 674 (938)
Q Consensus 597 L~L~~~~i~~lp~~i~~l~~L~~L~l~~~~~l~~lp--~~i~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~ 674 (938)
|+|++|.+..+|..+..+++|++|++++|. +..++ ..+..+++|++|++++|......|..+..+++|++|++++|.
T Consensus 83 L~Ls~n~i~~l~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~ 161 (306)
T 2z66_A 83 LDLSFNGVITMSSNFLGLEQLEHLDFQHSN-LKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNS 161 (306)
T ss_dssp EECCSCSEEEEEEEEETCTTCCEEECTTSE-EESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCE
T ss_pred EECCCCccccChhhcCCCCCCCEEECCCCc-ccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCc
Confidence 777777777777777777777777777776 44443 356677777777777775555555556666666666665554
Q ss_pred CCCCCCCCcccccccccccccCcceeecCcCCCCChhhhhhhhccCCCcCCceEEEEecCCCCCCCCCccchHHHHhhCC
Q 002308 675 AGGGVDGSKACRLESLKNLEHLQVCCIRRLGDVSDVGEAKLLELDKKKYLSRLRLEFDKKGGGGGRRKNEDDQLLLEALQ 754 (938)
Q Consensus 675 ~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~ 754 (938)
+.... ... .+..+++|+.|++++|.+.. ..+..+.
T Consensus 162 l~~~~---~~~-------------------------------~~~~l~~L~~L~Ls~n~l~~-----------~~~~~~~ 196 (306)
T 2z66_A 162 FQENF---LPD-------------------------------IFTELRNLTFLDLSQCQLEQ-----------LSPTAFN 196 (306)
T ss_dssp EGGGE---ECS-------------------------------CCTTCTTCCEEECTTSCCCE-----------ECTTTTT
T ss_pred ccccc---chh-------------------------------HHhhCcCCCEEECCCCCcCC-----------cCHHHhc
Confidence 32200 011 23334445555555554432 0134556
Q ss_pred CCCCCCeEEEeeecCCCCCCCchhccCCCCEEEEecCCCCCcCCC-CCCCC-ccceeeccccc
Q 002308 755 PPLNLKELEIHYYGGNTVFPSWMASLTNLKSLDLCFCENCEQLPP-LGKLP-SLEQLFISYMS 815 (938)
Q Consensus 755 ~~~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~l~~-l~~l~-~L~~L~L~~~~ 815 (938)
.+++|+.|++++|.+.+..+..+..+++|+.|+|++|.+....|. +..+| +|+.|+|++|+
T Consensus 197 ~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~ 259 (306)
T 2z66_A 197 SLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQND 259 (306)
T ss_dssp TCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCC
T ss_pred CCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCC
Confidence 678888888888888874444677899999999999988776665 78875 89999999987
No 58
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.83 E-value=1.3e-21 Score=210.22 Aligned_cols=225 Identities=16% Similarity=0.061 Sum_probs=145.3
Q ss_pred hhHHHHHhccCCCeeEEecCCCCCCcccCccccccCCCCeeeecCCccccccccccCCCCccEEEcCCCCCccccccccc
Q 002308 557 GEILEELFRESTSLRALDFPSFYLPLEIPRNIEKLVHLRYLNLSDQKIKKLPETLCELYNLEKLDISGCSDLRELPKGIG 636 (938)
Q Consensus 557 ~~~~~~~~~~~~~Lr~L~L~~n~~~~~lp~~~~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~l~~~~~l~~lp~~i~ 636 (938)
...+...+..+++|++|+|++|.+....|..++.+++|++|+|++|.++..++ +..+++|++|++++|. +..+|
T Consensus 23 ~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~Ls~n~-l~~l~---- 96 (317)
T 3o53_A 23 KQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNY-VQELL---- 96 (317)
T ss_dssp HHHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE-ETTCTTCCEEECCSSE-EEEEE----
T ss_pred hhhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh-hhhcCCCCEEECcCCc-ccccc----
Confidence 44566667778889999999988665556778888999999999998886665 8888999999999887 55444
Q ss_pred ccCccceeecCCCcccccCCccCCCCCCCcccCeeEecCCCCCCCCcccccccccccccCcceeecCcCCCCChhhhhhh
Q 002308 637 KLINMKHLLNSGTRSLRYMPVGIGRLTGLRTLGEFHVSAGGGVDGSKACRLESLKNLEHLQVCCIRRLGDVSDVGEAKLL 716 (938)
Q Consensus 637 ~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~ 716 (938)
.+++|++|++++|......+. .+++|++|++++|.+....+ ..+..+++|+.|++++|.+....+.
T Consensus 97 ~~~~L~~L~l~~n~l~~~~~~---~~~~L~~L~l~~N~l~~~~~----~~~~~l~~L~~L~Ls~N~l~~~~~~------- 162 (317)
T 3o53_A 97 VGPSIETLHAANNNISRVSCS---RGQGKKNIYLANNKITMLRD----LDEGCRSRVQYLDLKLNEIDTVNFA------- 162 (317)
T ss_dssp ECTTCCEEECCSSCCSEEEEC---CCSSCEEEECCSSCCCSGGG----BCTGGGSSEEEEECTTSCCCEEEGG-------
T ss_pred CCCCcCEEECCCCccCCcCcc---ccCCCCEEECCCCCCCCccc----hhhhccCCCCEEECCCCCCCcccHH-------
Confidence 347888999988855443332 35678888888777665221 2355667777777776655432211
Q ss_pred hc-cCCCcCCceEEEEecCCCCCCCCCccchHHHHhhCCCCCCCCeEEEeeecCCCCCCCchhccCCCCEEEEecCCCCC
Q 002308 717 EL-DKKKYLSRLRLEFDKKGGGGGRRKNEDDQLLLEALQPPLNLKELEIHYYGGNTVFPSWMASLTNLKSLDLCFCENCE 795 (938)
Q Consensus 717 ~l-~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~ 795 (938)
.+ ..+++|+.|++++|.+.. + .....+++|+.|++++|.+.. +|..+..+++|+.|+|++|.+..
T Consensus 163 ~~~~~l~~L~~L~L~~N~l~~------------~-~~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~L~~N~l~~ 228 (317)
T 3o53_A 163 ELAASSDTLEHLNLQYNFIYD------------V-KGQVVFAKLKTLDLSSNKLAF-MGPEFQSAAGVTWISLRNNKLVL 228 (317)
T ss_dssp GGGGGTTTCCEEECTTSCCCE------------E-ECCCCCTTCCEEECCSSCCCE-ECGGGGGGTTCSEEECTTSCCCE
T ss_pred HHhhccCcCCEEECCCCcCcc------------c-ccccccccCCEEECCCCcCCc-chhhhcccCcccEEECcCCcccc
Confidence 12 244566666666665543 1 122235566666666666665 55555566666666666665543
Q ss_pred cCCCCCCCCccceeeccccc
Q 002308 796 QLPPLGKLPSLEQLFISYMS 815 (938)
Q Consensus 796 ~l~~l~~l~~L~~L~L~~~~ 815 (938)
..+.+..+++|+.|++++|+
T Consensus 229 l~~~~~~l~~L~~L~l~~N~ 248 (317)
T 3o53_A 229 IEKALRFSQNLEHFDLRGNG 248 (317)
T ss_dssp ECTTCCCCTTCCEEECTTCC
T ss_pred hhhHhhcCCCCCEEEccCCC
Confidence 22235566666666666655
No 59
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.83 E-value=2e-20 Score=211.16 Aligned_cols=242 Identities=15% Similarity=0.128 Sum_probs=148.5
Q ss_pred ceEEEEccCCCcCcccccccCceeEEeccCCCCCCCCchhhHHHHHhccCCCeeEEecCCCCCCcccCccccccCCCCee
Q 002308 518 RHLMLIMGKESTFPISTCRAKRIRSLLIEWPEFGHSSLNGEILEELFRESTSLRALDFPSFYLPLEIPRNIEKLVHLRYL 597 (938)
Q Consensus 518 r~l~l~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~n~~~~~lp~~~~~l~~L~~L 597 (938)
..+......+..+|..+. ++++.|.+++|.+ ..+.+..|..+++|++|+|++|.+....+..|.++++|++|
T Consensus 46 ~~v~c~~~~l~~iP~~~~--~~l~~L~L~~n~i------~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L 117 (440)
T 3zyj_A 46 SKVICVRKNLREVPDGIS--TNTRLLNLHENQI------QIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTL 117 (440)
T ss_dssp CEEECCSCCCSSCCSCCC--TTCSEEECCSCCC------CEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEE
T ss_pred CEEEeCCCCcCcCCCCCC--CCCcEEEccCCcC------CeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEE
Confidence 345555555555555443 5666777766654 22233346677777777777777444445667777777777
Q ss_pred eecCCccccccc-cccCCCCccEEEcCCCCCcccccccccccCccceeecCCCcccccCCc-cCCCCCCCcccCeeEecC
Q 002308 598 NLSDQKIKKLPE-TLCELYNLEKLDISGCSDLRELPKGIGKLINMKHLLNSGTRSLRYMPV-GIGRLTGLRTLGEFHVSA 675 (938)
Q Consensus 598 ~L~~~~i~~lp~-~i~~l~~L~~L~l~~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~p~-~l~~l~~L~~L~l~~~~~ 675 (938)
+|++|.++.+|. .+..+++|++|++++|......+..+..+++|++|++++|.....++. .+.++++|+.|++++|.+
T Consensus 118 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l 197 (440)
T 3zyj_A 118 ELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNL 197 (440)
T ss_dssp ECCSSCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCC
T ss_pred ECCCCcCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcC
Confidence 777777776665 467777777777777763333333566777777777776555554444 355666666666655544
Q ss_pred CCCCCCCcccccccccccccCcceeecCcCCCCChhhhhhhhccCCCcCCceEEEEecCCCCCCCCCccchHHHHhhCCC
Q 002308 676 GGGVDGSKACRLESLKNLEHLQVCCIRRLGDVSDVGEAKLLELDKKKYLSRLRLEFDKKGGGGGRRKNEDDQLLLEALQP 755 (938)
Q Consensus 676 ~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~ 755 (938)
.. ...+. .+++|+.|+|++|.+.. ..+..+..
T Consensus 198 ~~------~~~~~-------------------------------~l~~L~~L~Ls~N~l~~-----------~~~~~~~~ 229 (440)
T 3zyj_A 198 RE------IPNLT-------------------------------PLIKLDELDLSGNHLSA-----------IRPGSFQG 229 (440)
T ss_dssp SS------CCCCT-------------------------------TCSSCCEEECTTSCCCE-----------ECTTTTTT
T ss_pred cc------ccccC-------------------------------CCcccCEEECCCCccCc-----------cChhhhcc
Confidence 32 11123 33445555555554432 01345556
Q ss_pred CCCCCeEEEeeecCCCCCCCchhccCCCCEEEEecCCCCCcCCC-CCCCCccceeeccccc
Q 002308 756 PLNLKELEIHYYGGNTVFPSWMASLTNLKSLDLCFCENCEQLPP-LGKLPSLEQLFISYMS 815 (938)
Q Consensus 756 ~~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~l~~-l~~l~~L~~L~L~~~~ 815 (938)
+++|+.|++++|.+....|..+..+++|+.|+|++|.+....+. +..+++|+.|+|++|+
T Consensus 230 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np 290 (440)
T 3zyj_A 230 LMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNP 290 (440)
T ss_dssp CTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSC
T ss_pred CccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccCCCEEEcCCCC
Confidence 67777777777777765566677777888888887766654444 6777788888887776
No 60
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.83 E-value=1.9e-20 Score=212.16 Aligned_cols=242 Identities=15% Similarity=0.071 Sum_probs=150.5
Q ss_pred ceEEEEccCCCcCcccccccCceeEEeccCCCCCCCCchhhHHHHHhccCCCeeEEecCCCCCCcccCccccccCCCCee
Q 002308 518 RHLMLIMGKESTFPISTCRAKRIRSLLIEWPEFGHSSLNGEILEELFRESTSLRALDFPSFYLPLEIPRNIEKLVHLRYL 597 (938)
Q Consensus 518 r~l~l~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~n~~~~~lp~~~~~l~~L~~L 597 (938)
..+...+..+..+|..+. ++++.|++++|.+ ..+.+..|..+++|++|+|++|.+....|..|.++++|++|
T Consensus 57 ~~v~c~~~~l~~iP~~~~--~~l~~L~L~~n~i------~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L 128 (452)
T 3zyi_A 57 SKVVCTRRGLSEVPQGIP--SNTRYLNLMENNI------QMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTL 128 (452)
T ss_dssp CEEECCSSCCSSCCSCCC--TTCSEEECCSSCC------CEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEE
T ss_pred cEEEECCCCcCccCCCCC--CCccEEECcCCcC------ceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEE
Confidence 344455555555554432 5667777766654 22233346677777777777777555455667777777777
Q ss_pred eecCCcccccccc-ccCCCCccEEEcCCCCCcccccccccccCccceeecCCCcccccCCc-cCCCCCCCcccCeeEecC
Q 002308 598 NLSDQKIKKLPET-LCELYNLEKLDISGCSDLRELPKGIGKLINMKHLLNSGTRSLRYMPV-GIGRLTGLRTLGEFHVSA 675 (938)
Q Consensus 598 ~L~~~~i~~lp~~-i~~l~~L~~L~l~~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~p~-~l~~l~~L~~L~l~~~~~ 675 (938)
+|++|.++.+|.. +..+++|++|++++|......+..+..+++|++|++++|..+..++. .+..+++|+.|++++|.+
T Consensus 129 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l 208 (452)
T 3zyi_A 129 ELFDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNI 208 (452)
T ss_dssp ECCSSCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCC
T ss_pred ECCCCcCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCcc
Confidence 7777777766653 66677777777777763333333566777777777777555555544 355666666666655544
Q ss_pred CCCCCCCcccccccccccccCcceeecCcCCCCChhhhhhhhccCCCcCCceEEEEecCCCCCCCCCccchHHHHhhCCC
Q 002308 676 GGGVDGSKACRLESLKNLEHLQVCCIRRLGDVSDVGEAKLLELDKKKYLSRLRLEFDKKGGGGGRRKNEDDQLLLEALQP 755 (938)
Q Consensus 676 ~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~ 755 (938)
... .. +..+++|+.|+|++|.+.. ..+..+..
T Consensus 209 ~~~------~~-------------------------------~~~l~~L~~L~Ls~N~l~~-----------~~~~~~~~ 240 (452)
T 3zyi_A 209 KDM------PN-------------------------------LTPLVGLEELEMSGNHFPE-----------IRPGSFHG 240 (452)
T ss_dssp SSC------CC-------------------------------CTTCTTCCEEECTTSCCSE-----------ECGGGGTT
T ss_pred ccc------cc-------------------------------ccccccccEEECcCCcCcc-----------cCcccccC
Confidence 331 11 2334455555555555433 12345666
Q ss_pred CCCCCeEEEeeecCCCCCCCchhccCCCCEEEEecCCCCCcCCC-CCCCCccceeeccccc
Q 002308 756 PLNLKELEIHYYGGNTVFPSWMASLTNLKSLDLCFCENCEQLPP-LGKLPSLEQLFISYMS 815 (938)
Q Consensus 756 ~~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~l~~-l~~l~~L~~L~L~~~~ 815 (938)
+++|+.|++++|.+....|..+..+++|+.|+|++|.+....+. +..+++|+.|+|++|+
T Consensus 241 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np 301 (452)
T 3zyi_A 241 LSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNP 301 (452)
T ss_dssp CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSC
T ss_pred ccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhccccCCCEEEccCCC
Confidence 77777888877777775566777788888888888866644444 6778888888888876
No 61
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.81 E-value=7e-20 Score=207.53 Aligned_cols=224 Identities=17% Similarity=0.180 Sum_probs=162.8
Q ss_pred CCeeEEecCCCCCCcccCccccccCCCCeeeecCCcccccc-ccccCCCCccEEEcCCCCCcccccc-cccccCccceee
Q 002308 568 TSLRALDFPSFYLPLEIPRNIEKLVHLRYLNLSDQKIKKLP-ETLCELYNLEKLDISGCSDLRELPK-GIGKLINMKHLL 645 (938)
Q Consensus 568 ~~Lr~L~L~~n~~~~~lp~~~~~l~~L~~L~L~~~~i~~lp-~~i~~l~~L~~L~l~~~~~l~~lp~-~i~~l~~L~~L~ 645 (938)
++|++|+|++|.+....|..|+++++|++|+|++|.++.++ ..|.++++|++|++++|. +..+|. .+..+++|++|+
T Consensus 75 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~ 153 (452)
T 3zyi_A 75 SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNW-LTVIPSGAFEYLSKLRELW 153 (452)
T ss_dssp TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC-CSBCCTTTSSSCTTCCEEE
T ss_pred CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCc-CCccChhhhcccCCCCEEE
Confidence 57788888888865556777888888888888888887655 567788888888888887 444443 477788888888
Q ss_pred cCCCcccccCCccCCCCCCCcccCeeEecCCCCCCCCcccccccccccccCcceeecCcCCCCChhhhhhhhccCCCcCC
Q 002308 646 NSGTRSLRYMPVGIGRLTGLRTLGEFHVSAGGGVDGSKACRLESLKNLEHLQVCCIRRLGDVSDVGEAKLLELDKKKYLS 725 (938)
Q Consensus 646 l~~~~~~~~~p~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~~~~L~ 725 (938)
+++|.+....+..+.++++|+.|++.++.... .++. ..+..+++|+
T Consensus 154 L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~----------------------------~i~~------~~~~~l~~L~ 199 (452)
T 3zyi_A 154 LRNNPIESIPSYAFNRVPSLMRLDLGELKKLE----------------------------YISE------GAFEGLFNLK 199 (452)
T ss_dssp CCSCCCCEECTTTTTTCTTCCEEECCCCTTCC----------------------------EECT------TTTTTCTTCC
T ss_pred CCCCCcceeCHhHHhcCCcccEEeCCCCCCcc----------------------------ccCh------hhccCCCCCC
Confidence 88875544334456666777766665433221 1110 1355667788
Q ss_pred ceEEEEecCCCCCCCCCccchHHHHhhCCCCCCCCeEEEeeecCCCCCCCchhccCCCCEEEEecCCCCCcCCC-CCCCC
Q 002308 726 RLRLEFDKKGGGGGRRKNEDDQLLLEALQPPLNLKELEIHYYGGNTVFPSWMASLTNLKSLDLCFCENCEQLPP-LGKLP 804 (938)
Q Consensus 726 ~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~l~~-l~~l~ 804 (938)
.|+|++|.+.. + ..+..+++|+.|++++|.+.+..|..+..+++|+.|+|++|.+....+. +..++
T Consensus 200 ~L~L~~n~l~~------------~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~ 266 (452)
T 3zyi_A 200 YLNLGMCNIKD------------M-PNLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLA 266 (452)
T ss_dssp EEECTTSCCSS------------C-CCCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCT
T ss_pred EEECCCCcccc------------c-ccccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCC
Confidence 88888887764 1 2467789999999999999986688899999999999999988776665 99999
Q ss_pred ccceeecccccCceEeCcccccCCCCCCCCCCCCcccccCCccceeeccccc
Q 002308 805 SLEQLFISYMSSVKRVGDEFLGVESDRHDSSSSSSVIIAFPKLKSLSIFEME 856 (938)
Q Consensus 805 ~L~~L~L~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~~~ 856 (938)
+|+.|+|++|. ++.++...+ ..+++|+.|++.+++
T Consensus 267 ~L~~L~L~~N~-l~~~~~~~~----------------~~l~~L~~L~L~~Np 301 (452)
T 3zyi_A 267 SLVELNLAHNN-LSSLPHDLF----------------TPLRYLVELHLHHNP 301 (452)
T ss_dssp TCCEEECCSSC-CSCCCTTSS----------------TTCTTCCEEECCSSC
T ss_pred CCCEEECCCCc-CCccChHHh----------------ccccCCCEEEccCCC
Confidence 99999999997 666665433 246677777776643
No 62
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.81 E-value=1.1e-19 Score=205.24 Aligned_cols=224 Identities=18% Similarity=0.215 Sum_probs=162.0
Q ss_pred CCeeEEecCCCCCCcccCccccccCCCCeeeecCCcccccc-ccccCCCCccEEEcCCCCCcccccc-cccccCccceee
Q 002308 568 TSLRALDFPSFYLPLEIPRNIEKLVHLRYLNLSDQKIKKLP-ETLCELYNLEKLDISGCSDLRELPK-GIGKLINMKHLL 645 (938)
Q Consensus 568 ~~Lr~L~L~~n~~~~~lp~~~~~l~~L~~L~L~~~~i~~lp-~~i~~l~~L~~L~l~~~~~l~~lp~-~i~~l~~L~~L~ 645 (938)
+++++|+|++|.+....+..|.++++|++|+|++|.++.++ ..|.++++|++|++++|. +..+|. .+..+++|++|+
T Consensus 64 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~ 142 (440)
T 3zyj_A 64 TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNR-LTTIPNGAFVYLSKLKELW 142 (440)
T ss_dssp TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSC-CSSCCTTTSCSCSSCCEEE
T ss_pred CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCc-CCeeCHhHhhccccCceee
Confidence 56788888888855555677788888888888888887665 467778888888888887 444444 577788888888
Q ss_pred cCCCcccccCCccCCCCCCCcccCeeEecCCCCCCCCcccccccccccccCcceeecCcCCCCChhhhhhhhccCCCcCC
Q 002308 646 NSGTRSLRYMPVGIGRLTGLRTLGEFHVSAGGGVDGSKACRLESLKNLEHLQVCCIRRLGDVSDVGEAKLLELDKKKYLS 725 (938)
Q Consensus 646 l~~~~~~~~~p~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~~~~L~ 725 (938)
+++|.+....+..+.++++|+.|++.+|.... .++. ..+..+++|+
T Consensus 143 L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~----------------------------~i~~------~~~~~l~~L~ 188 (440)
T 3zyj_A 143 LRNNPIESIPSYAFNRIPSLRRLDLGELKRLS----------------------------YISE------GAFEGLSNLR 188 (440)
T ss_dssp CCSCCCCEECTTTTTTCTTCCEEECCCCTTCC----------------------------EECT------TTTTTCSSCC
T ss_pred CCCCcccccCHHHhhhCcccCEeCCCCCCCcc----------------------------eeCc------chhhcccccC
Confidence 88875554444456667777777665533221 1110 1345566777
Q ss_pred ceEEEEecCCCCCCCCCccchHHHHhhCCCCCCCCeEEEeeecCCCCCCCchhccCCCCEEEEecCCCCCcCCC-CCCCC
Q 002308 726 RLRLEFDKKGGGGGRRKNEDDQLLLEALQPPLNLKELEIHYYGGNTVFPSWMASLTNLKSLDLCFCENCEQLPP-LGKLP 804 (938)
Q Consensus 726 ~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~l~~-l~~l~ 804 (938)
.|+|++|.+.. + ..+..+++|+.|+|++|.+....|..+..+++|+.|+|++|.+....+. +.+++
T Consensus 189 ~L~L~~n~l~~------------~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~ 255 (440)
T 3zyj_A 189 YLNLAMCNLRE------------I-PNLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQ 255 (440)
T ss_dssp EEECTTSCCSS------------C-CCCTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCT
T ss_pred eecCCCCcCcc------------c-cccCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCC
Confidence 77777776654 1 2467789999999999999986688899999999999999988776665 99999
Q ss_pred ccceeecccccCceEeCcccccCCCCCCCCCCCCcccccCCccceeeccccc
Q 002308 805 SLEQLFISYMSSVKRVGDEFLGVESDRHDSSSSSSVIIAFPKLKSLSIFEME 856 (938)
Q Consensus 805 ~L~~L~L~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~~~ 856 (938)
+|+.|+|++|. ++.++...+ ..+++|+.|++.+++
T Consensus 256 ~L~~L~L~~N~-l~~~~~~~~----------------~~l~~L~~L~L~~Np 290 (440)
T 3zyj_A 256 SLVEINLAHNN-LTLLPHDLF----------------TPLHHLERIHLHHNP 290 (440)
T ss_dssp TCCEEECTTSC-CCCCCTTTT----------------SSCTTCCEEECCSSC
T ss_pred CCCEEECCCCC-CCccChhHh----------------ccccCCCEEEcCCCC
Confidence 99999999997 666665443 246777777776643
No 63
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.81 E-value=5e-23 Score=234.90 Aligned_cols=366 Identities=15% Similarity=0.029 Sum_probs=246.0
Q ss_pred cccceEEEEccCCCc-----CcccccccCceeEEeccCCCCCCCCchhhHHHHHhccCC----CeeEEecCCCCCCc---
Q 002308 515 EKVRHLMLIMGKEST-----FPISTCRAKRIRSLLIEWPEFGHSSLNGEILEELFREST----SLRALDFPSFYLPL--- 582 (938)
Q Consensus 515 ~~~r~l~l~~~~~~~-----~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~----~Lr~L~L~~n~~~~--- 582 (938)
+.++.+++.++.+.. ++..+..+++|++|++++|.+ ....+..++..++ +|++|+|++|.+..
T Consensus 28 ~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l-----~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~ 102 (461)
T 1z7x_W 28 QQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNEL-----GDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGC 102 (461)
T ss_dssp TTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCC-----HHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGH
T ss_pred CCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcC-----ChHHHHHHHHHHhhCCCceeEEEccCCCCCHHHH
Confidence 578999999999873 456677889999999998875 2333444555566 79999999999553
Q ss_pred -ccCccccccCCCCeeeecCCccccc-cccc-----cCCCCccEEEcCCCCCcc----cccccccccCccceeecCCCcc
Q 002308 583 -EIPRNIEKLVHLRYLNLSDQKIKKL-PETL-----CELYNLEKLDISGCSDLR----ELPKGIGKLINMKHLLNSGTRS 651 (938)
Q Consensus 583 -~lp~~~~~l~~L~~L~L~~~~i~~l-p~~i-----~~l~~L~~L~l~~~~~l~----~lp~~i~~l~~L~~L~l~~~~~ 651 (938)
.+|..+..+++|++|+|++|.++.. +..+ ...++|++|++++|.... .++..+..+++|++|++++|..
T Consensus 103 ~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i 182 (461)
T 1z7x_W 103 GVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDI 182 (461)
T ss_dssp HHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBC
T ss_pred HHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCCc
Confidence 4688899999999999999998732 2222 336789999999998544 3566777889999999999965
Q ss_pred cccCCccCC-----CCCCCcccCeeEecCCCCCCCCcccccccccccccCcceeecCcCCCCChhhhhhhhccCCCcCCc
Q 002308 652 LRYMPVGIG-----RLTGLRTLGEFHVSAGGGVDGSKACRLESLKNLEHLQVCCIRRLGDVSDVGEAKLLELDKKKYLSR 726 (938)
Q Consensus 652 ~~~~p~~l~-----~l~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~~~~L~~ 726 (938)
....+..+. ..++|+.|++++|.+.......+...+..+++|+.|++++|...... ...........+++|+.
T Consensus 183 ~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~--~~~l~~~~~~~~~~L~~ 260 (461)
T 1z7x_W 183 NEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVG--MAELCPGLLHPSSRLRT 260 (461)
T ss_dssp HHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHH--HHHHHHHHTSTTCCCCE
T ss_pred chHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHH--HHHHHHHHhcCCCCceE
Confidence 443333332 35699999999887664211112334567889999999888643210 00011122335789999
Q ss_pred eEEEEecCCCCCCCCCccchHHHHhhCCCCCCCCeEEEeeecCCCCCCCchh-----ccCCCCEEEEecCCCCCc----C
Q 002308 727 LRLEFDKKGGGGGRRKNEDDQLLLEALQPPLNLKELEIHYYGGNTVFPSWMA-----SLTNLKSLDLCFCENCEQ----L 797 (938)
Q Consensus 727 L~L~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~p~~~~-----~l~~L~~L~L~~~~~~~~----l 797 (938)
|++++|.+.. .....++..+..+++|++|++++|.+....+..+. ..++|+.|+|++|.+... +
T Consensus 261 L~L~~n~l~~-------~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l 333 (461)
T 1z7x_W 261 LWIWECGITA-------KGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHF 333 (461)
T ss_dssp EECTTSCCCH-------HHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHH
T ss_pred EECcCCCCCH-------HHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHH
Confidence 9999998764 12233566777789999999999987643222333 236999999999986653 2
Q ss_pred CC-CCCCCccceeecccccCceEeCcccccCCCCCCCCCCCCcccccCCccceeeccccccccccccccccccccccccc
Q 002308 798 PP-LGKLPSLEQLFISYMSSVKRVGDEFLGVESDRHDSSSSSSVIIAFPKLKSLSIFEMEELEEWDYGITRTGNTFINIM 876 (938)
Q Consensus 798 ~~-l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~~~~~~~~~~~~~~~~l 876 (938)
+. +..+++|+.|++++|. +...+...... ......++|+.|++++|. +.... ....+..+..+
T Consensus 334 ~~~l~~~~~L~~L~Ls~n~-i~~~~~~~l~~-----------~l~~~~~~L~~L~L~~n~-i~~~~---~~~l~~~l~~~ 397 (461)
T 1z7x_W 334 SSVLAQNRFLLELQISNNR-LEDAGVRELCQ-----------GLGQPGSVLRVLWLADCD-VSDSS---CSSLAATLLAN 397 (461)
T ss_dssp HHHHHHCSSCCEEECCSSB-CHHHHHHHHHH-----------HHTSTTCCCCEEECTTSC-CCHHH---HHHHHHHHHHC
T ss_pred HHHHhhCCCccEEEccCCc-cccccHHHHHH-----------HHcCCCCceEEEECCCCC-CChhh---HHHHHHHHHhC
Confidence 33 6778999999999996 43322111100 001136799999999874 33100 00112234468
Q ss_pred cccceeccccccccc--------CCCCCCCCCCCcCEEEEecCcc
Q 002308 877 PRLSSLTINYCSKLK--------ALPDHIHQTTTLKELRIGECDL 913 (938)
Q Consensus 877 ~~L~~L~l~~c~~l~--------~lp~~l~~l~~L~~L~l~~c~~ 913 (938)
++|++|++++|+.-. .+|.. ..+|+.|.+.++..
T Consensus 398 ~~L~~L~l~~N~i~~~~~~~l~~~l~~~---~~~L~~L~~~~~~~ 439 (461)
T 1z7x_W 398 HSLRELDLSNNCLGDAGILQLVESVRQP---GCLLEQLVLYDIYW 439 (461)
T ss_dssp CCCCEEECCSSSCCHHHHHHHHHHHTST---TCCCCEEECTTCCC
T ss_pred CCccEEECCCCCCCHHHHHHHHHHhccC---Ccchhheeeccccc
Confidence 999999999986422 13433 34677777665543
No 64
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.81 E-value=2.8e-20 Score=196.96 Aligned_cols=108 Identities=22% Similarity=0.178 Sum_probs=49.4
Q ss_pred hccCCCeeEEecCCCCCCcccCccccccCCCCeeeecCCc-cccc-cccccCCCCccEEEcCCCCCcccccccccccCcc
Q 002308 564 FRESTSLRALDFPSFYLPLEIPRNIEKLVHLRYLNLSDQK-IKKL-PETLCELYNLEKLDISGCSDLRELPKGIGKLINM 641 (938)
Q Consensus 564 ~~~~~~Lr~L~L~~n~~~~~lp~~~~~l~~L~~L~L~~~~-i~~l-p~~i~~l~~L~~L~l~~~~~l~~lp~~i~~l~~L 641 (938)
|..+++|++|+|++|.+....|..++.+++|++|+|++|. ++.+ |..+..+++|++|++++|......|..+..+++|
T Consensus 52 ~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L 131 (285)
T 1ozn_A 52 FRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAAL 131 (285)
T ss_dssp TTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTC
T ss_pred cccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCC
Confidence 4445555555555554333334445555555555555554 4444 3344555555555555554333334444445555
Q ss_pred ceeecCCCcccccCCccCCCCCCCcccCee
Q 002308 642 KHLLNSGTRSLRYMPVGIGRLTGLRTLGEF 671 (938)
Q Consensus 642 ~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~ 671 (938)
++|++++|......+..++.+++|+.|+++
T Consensus 132 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 161 (285)
T 1ozn_A 132 QYLYLQDNALQALPDDTFRDLGNLTHLFLH 161 (285)
T ss_dssp CEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CEEECCCCcccccCHhHhccCCCccEEECC
Confidence 555555543322222223344444444433
No 65
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.80 E-value=7.5e-20 Score=193.61 Aligned_cols=203 Identities=18% Similarity=0.111 Sum_probs=137.5
Q ss_pred CCCeeEEecCCCCCCcccCccccccCCCCeeeecCCccccc-cccccCCCCccEEEcCCCCCcccc-cccccccCcccee
Q 002308 567 STSLRALDFPSFYLPLEIPRNIEKLVHLRYLNLSDQKIKKL-PETLCELYNLEKLDISGCSDLREL-PKGIGKLINMKHL 644 (938)
Q Consensus 567 ~~~Lr~L~L~~n~~~~~lp~~~~~l~~L~~L~L~~~~i~~l-p~~i~~l~~L~~L~l~~~~~l~~l-p~~i~~l~~L~~L 644 (938)
.++|++|+|++|.+....+..|+.+++|++|+|++|.++.+ |..+..+++|++|++++|..+..+ |..+..+++|++|
T Consensus 31 ~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L 110 (285)
T 1ozn_A 31 PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTL 110 (285)
T ss_dssp CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEE
T ss_pred CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEE
Confidence 45778888888875444445677788888888888877765 567777888888888887644444 6667777888888
Q ss_pred ecCCCcccccCCccCCCCCCCcccCeeEecCCCCCCCCcccccccccccccCcceeecCcCCCCChhhhhhhhccCCCcC
Q 002308 645 LNSGTRSLRYMPVGIGRLTGLRTLGEFHVSAGGGVDGSKACRLESLKNLEHLQVCCIRRLGDVSDVGEAKLLELDKKKYL 724 (938)
Q Consensus 645 ~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~~~~L 724 (938)
++++|......|..+..+++|+.|++++|.+.... +. .+..+++|
T Consensus 111 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~----------------------------~~-------~~~~l~~L 155 (285)
T 1ozn_A 111 HLDRCGLQELGPGLFRGLAALQYLYLQDNALQALP----------------------------DD-------TFRDLGNL 155 (285)
T ss_dssp ECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCC----------------------------TT-------TTTTCTTC
T ss_pred ECCCCcCCEECHhHhhCCcCCCEEECCCCcccccC----------------------------Hh-------HhccCCCc
Confidence 88877655555556667777777776666554311 11 23334455
Q ss_pred CceEEEEecCCCCCCCCCccchHHHHhhCCCCCCCCeEEEeeecCCCCCCCchhccCCCCEEEEecCCCCCcCCC-CCCC
Q 002308 725 SRLRLEFDKKGGGGGRRKNEDDQLLLEALQPPLNLKELEIHYYGGNTVFPSWMASLTNLKSLDLCFCENCEQLPP-LGKL 803 (938)
Q Consensus 725 ~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~l~~-l~~l 803 (938)
+.|++++|.+... ....+..+++|+.|++++|.+.+..|.++..+++|+.|+|++|.+....+. +..+
T Consensus 156 ~~L~l~~n~l~~~-----------~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l 224 (285)
T 1ozn_A 156 THLFLHGNRISSV-----------PERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPL 224 (285)
T ss_dssp CEEECCSSCCCEE-----------CTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTC
T ss_pred cEEECCCCccccc-----------CHHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccC
Confidence 5555555544320 112355677888888888887775577788888888888888876654443 7788
Q ss_pred Cccceeeccccc
Q 002308 804 PSLEQLFISYMS 815 (938)
Q Consensus 804 ~~L~~L~L~~~~ 815 (938)
++|+.|++++|+
T Consensus 225 ~~L~~L~l~~N~ 236 (285)
T 1ozn_A 225 RALQYLRLNDNP 236 (285)
T ss_dssp TTCCEEECCSSC
T ss_pred cccCEEeccCCC
Confidence 888888888886
No 66
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.80 E-value=4.8e-20 Score=197.39 Aligned_cols=245 Identities=18% Similarity=0.114 Sum_probs=186.7
Q ss_pred eeCCcccccCCCCcccccceEEEEccCCCcCccc-ccccCceeEEeccCCCCCCCCchhhHHHHHhccCCCeeEEecCCC
Q 002308 500 EVNGSEELNVPNSLDEKVRHLMLIMGKESTFPIS-TCRAKRIRSLLIEWPEFGHSSLNGEILEELFRESTSLRALDFPSF 578 (938)
Q Consensus 500 ~~~~~~~~~~~~~~~~~~r~l~l~~~~~~~~~~~-~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~n 578 (938)
.+.......+|...+..++++.+.++.+..++.. +..+++|+.|.+++|.+... +..+. .+..+++|++|+|++|
T Consensus 13 ~c~~~~l~~ip~~~~~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~---~~~~~-~~~~~~~L~~L~Ls~n 88 (306)
T 2z66_A 13 RCNSKGLTSVPTGIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFK---GCCSQ-SDFGTTSLKYLDLSFN 88 (306)
T ss_dssp ECCSSCCSSCCSCCCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEE---EEEEH-HHHSCSCCCEEECCSC
T ss_pred EcCCCCcccCCCCCCCCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcc---cCccc-ccccccccCEEECCCC
Confidence 3444344455666778999999999999887764 68999999999999876321 11122 2557899999999999
Q ss_pred CCCcccCccccccCCCCeeeecCCccccccc--cccCCCCccEEEcCCCCCcccccccccccCccceeecCCCcccc-cC
Q 002308 579 YLPLEIPRNIEKLVHLRYLNLSDQKIKKLPE--TLCELYNLEKLDISGCSDLRELPKGIGKLINMKHLLNSGTRSLR-YM 655 (938)
Q Consensus 579 ~~~~~lp~~~~~l~~L~~L~L~~~~i~~lp~--~i~~l~~L~~L~l~~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~-~~ 655 (938)
. ...+|..+..+++|++|++++|.++.++. .+..+++|++|++++|......|..+..+++|++|++++|.... ..
T Consensus 89 ~-i~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~ 167 (306)
T 2z66_A 89 G-VITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFL 167 (306)
T ss_dssp S-EEEEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEE
T ss_pred c-cccChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccc
Confidence 9 55788889999999999999999998875 78999999999999999666777889999999999999997665 57
Q ss_pred CccCCCCCCCcccCeeEecCCCCCCCCcccccccccccccCcceeecCcCCCCChhhhhhhhccCCCcCCceEEEEecCC
Q 002308 656 PVGIGRLTGLRTLGEFHVSAGGGVDGSKACRLESLKNLEHLQVCCIRRLGDVSDVGEAKLLELDKKKYLSRLRLEFDKKG 735 (938)
Q Consensus 656 p~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~ 735 (938)
|..+..+++|+.|++++|.+....+ ..+..+++|+.|++.+| .+.
T Consensus 168 ~~~~~~l~~L~~L~Ls~n~l~~~~~----~~~~~l~~L~~L~L~~N-------------------------------~l~ 212 (306)
T 2z66_A 168 PDIFTELRNLTFLDLSQCQLEQLSP----TAFNSLSSLQVLNMSHN-------------------------------NFF 212 (306)
T ss_dssp CSCCTTCTTCCEEECTTSCCCEECT----TTTTTCTTCCEEECTTS-------------------------------CCS
T ss_pred hhHHhhCcCCCEEECCCCCcCCcCH----HHhcCCCCCCEEECCCC-------------------------------ccC
Confidence 8889999999999998887654211 12444455555555444 333
Q ss_pred CCCCCCCccchHHHHhhCCCCCCCCeEEEeeecCCCCCCCchhccC-CCCEEEEecCCCCC
Q 002308 736 GGGGRRKNEDDQLLLEALQPPLNLKELEIHYYGGNTVFPSWMASLT-NLKSLDLCFCENCE 795 (938)
Q Consensus 736 ~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~p~~~~~l~-~L~~L~L~~~~~~~ 795 (938)
.. ....+..+++|+.|++++|.+.+..|..+..++ +|+.|+|++|.+..
T Consensus 213 ~~-----------~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~~ 262 (306)
T 2z66_A 213 SL-----------DTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFAC 262 (306)
T ss_dssp BC-----------CSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEEC
T ss_pred cc-----------ChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCeec
Confidence 20 012345677888889988888886777788774 89999999997654
No 67
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.80 E-value=4.9e-19 Score=205.20 Aligned_cols=255 Identities=18% Similarity=0.106 Sum_probs=158.9
Q ss_pred ccceEEEEccCCCcCcccccccCceeEEeccCCCCCCCCchhhHHHHHhccCCCeeEEecCCCCCCcccCccccccCCCC
Q 002308 516 KVRHLMLIMGKESTFPISTCRAKRIRSLLIEWPEFGHSSLNGEILEELFRESTSLRALDFPSFYLPLEIPRNIEKLVHLR 595 (938)
Q Consensus 516 ~~r~l~l~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~n~~~~~lp~~~~~l~~L~ 595 (938)
.++.++++++.++.+|..+. ++|+.|.+++|.+. .++. .+++|++|+|++|. +..+|. .+++|+
T Consensus 41 ~l~~L~ls~n~L~~lp~~l~--~~L~~L~L~~N~l~------~lp~----~l~~L~~L~Ls~N~-l~~lp~---~l~~L~ 104 (622)
T 3g06_A 41 GNAVLNVGESGLTTLPDCLP--AHITTLVIPDNNLT------SLPA----LPPELRTLEVSGNQ-LTSLPV---LPPGLL 104 (622)
T ss_dssp CCCEEECCSSCCSCCCSCCC--TTCSEEEECSCCCS------CCCC----CCTTCCEEEECSCC-CSCCCC---CCTTCC
T ss_pred CCcEEEecCCCcCccChhhC--CCCcEEEecCCCCC------CCCC----cCCCCCEEEcCCCc-CCcCCC---CCCCCC
Confidence 35666677777666665544 67777777777652 1111 45677777777777 445555 566777
Q ss_pred eeeecCCccccccccccCCCCccEEEcCCCCCcccccccccccCccceeecCCCcccccCCccCCCCCCCcccCeeEecC
Q 002308 596 YLNLSDQKIKKLPETLCELYNLEKLDISGCSDLRELPKGIGKLINMKHLLNSGTRSLRYMPVGIGRLTGLRTLGEFHVSA 675 (938)
Q Consensus 596 ~L~L~~~~i~~lp~~i~~l~~L~~L~l~~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~~ 675 (938)
+|+|++|.++.+|. .+++|++|++++|. +..+|.. +++|++|++++|.+ ..+|.. +.+|+.|++++|.+
T Consensus 105 ~L~Ls~N~l~~l~~---~l~~L~~L~L~~N~-l~~lp~~---l~~L~~L~Ls~N~l-~~l~~~---~~~L~~L~L~~N~l 173 (622)
T 3g06_A 105 ELSIFSNPLTHLPA---LPSGLCKLWIFGNQ-LTSLPVL---PPGLQELSVSDNQL-ASLPAL---PSELCKLWAYNNQL 173 (622)
T ss_dssp EEEECSCCCCCCCC---CCTTCCEEECCSSC-CSCCCCC---CTTCCEEECCSSCC-SCCCCC---CTTCCEEECCSSCC
T ss_pred EEECcCCcCCCCCC---CCCCcCEEECCCCC-CCcCCCC---CCCCCEEECcCCcC-CCcCCc---cCCCCEEECCCCCC
Confidence 77777777777766 56677777777776 5556653 36777777777743 344432 35666777766665
Q ss_pred CCCCCCCcccccccccccccCcceeecCcCCCCChhhhhhhhccCCCcCCceEEEEecCCCCCCCCCccchHHHHhhCCC
Q 002308 676 GGGVDGSKACRLESLKNLEHLQVCCIRRLGDVSDVGEAKLLELDKKKYLSRLRLEFDKKGGGGGRRKNEDDQLLLEALQP 755 (938)
Q Consensus 676 ~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~ 755 (938)
... . ..+++|+.|++++|.+..... ..++|+.|++++|.+.. ++ ..
T Consensus 174 ~~l-----~---~~~~~L~~L~Ls~N~l~~l~~-----------~~~~L~~L~L~~N~l~~------------l~---~~ 219 (622)
T 3g06_A 174 TSL-----P---MLPSGLQELSVSDNQLASLPT-----------LPSELYKLWAYNNRLTS------------LP---AL 219 (622)
T ss_dssp SCC-----C---CCCTTCCEEECCSSCCSCCCC-----------CCTTCCEEECCSSCCSS------------CC---CC
T ss_pred CCC-----c---ccCCCCcEEECCCCCCCCCCC-----------ccchhhEEECcCCcccc------------cC---CC
Confidence 541 1 234667777777666543211 13567777777776654 11 12
Q ss_pred CCCCCeEEEeeecCCCCCCCchhccCCCCEEEEecCCCCCcCCCCCCCCccceeecccccCceEeCcccccCCCCCCCCC
Q 002308 756 PLNLKELEIHYYGGNTVFPSWMASLTNLKSLDLCFCENCEQLPPLGKLPSLEQLFISYMSSVKRVGDEFLGVESDRHDSS 835 (938)
Q Consensus 756 ~~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~l~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~l~~~~~ 835 (938)
+++|+.|++++|.+++ +| ..+++|+.|+|++|.+. .+|. .+++|+.|+|++|. ++.+|..+.
T Consensus 220 ~~~L~~L~Ls~N~L~~-lp---~~l~~L~~L~Ls~N~L~-~lp~--~~~~L~~L~Ls~N~-L~~lp~~l~---------- 281 (622)
T 3g06_A 220 PSGLKELIVSGNRLTS-LP---VLPSELKELMVSGNRLT-SLPM--LPSGLLSLSVYRNQ-LTRLPESLI---------- 281 (622)
T ss_dssp CTTCCEEECCSSCCSC-CC---CCCTTCCEEECCSSCCS-CCCC--CCTTCCEEECCSSC-CCSCCGGGG----------
T ss_pred CCCCCEEEccCCccCc-CC---CCCCcCcEEECCCCCCC-cCCc--ccccCcEEeCCCCC-CCcCCHHHh----------
Confidence 3677778887777776 66 34577778888877554 3444 56777788887775 555554432
Q ss_pred CCCcccccCCccceeeccccc
Q 002308 836 SSSSVIIAFPKLKSLSIFEME 856 (938)
Q Consensus 836 ~~~~~~~~~~~L~~L~l~~~~ 856 (938)
.+++|+.|++.+++
T Consensus 282 -------~l~~L~~L~L~~N~ 295 (622)
T 3g06_A 282 -------HLSSETTVNLEGNP 295 (622)
T ss_dssp -------GSCTTCEEECCSCC
T ss_pred -------hccccCEEEecCCC
Confidence 45666666666553
No 68
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.79 E-value=3.5e-21 Score=206.96 Aligned_cols=269 Identities=12% Similarity=0.072 Sum_probs=199.9
Q ss_pred CCeeEEecCCCCCCcccCccccccCCCCeeeecCCcccccc-ccccCCCCccEEEcCCCCCcccccccccccCccceeec
Q 002308 568 TSLRALDFPSFYLPLEIPRNIEKLVHLRYLNLSDQKIKKLP-ETLCELYNLEKLDISGCSDLRELPKGIGKLINMKHLLN 646 (938)
Q Consensus 568 ~~Lr~L~L~~n~~~~~lp~~~~~l~~L~~L~L~~~~i~~lp-~~i~~l~~L~~L~l~~~~~l~~lp~~i~~l~~L~~L~l 646 (938)
..++.++++.+.+...++..+..+++|++|+|++|.++.++ ..+.++++|++|++++|. +...+. +..+++|++|++
T Consensus 10 ~~l~i~~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~-~~~l~~L~~L~L 87 (317)
T 3o53_A 10 NRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNV-LYETLD-LESLSTLRTLDL 87 (317)
T ss_dssp TEEEEESCCTTTHHHHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSC-CEEEEE-ETTCTTCCEEEC
T ss_pred CceeEeeccccchhhhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCc-CCcchh-hhhcCCCCEEEC
Confidence 45778888888744444455567789999999999999776 589999999999999998 444444 899999999999
Q ss_pred CCCcccccCCccCCCCCCCcccCeeEecCCCCCCCCcccccccccccccCcceeecCcCCCCChhhhhhhhccCCCcCCc
Q 002308 647 SGTRSLRYMPVGIGRLTGLRTLGEFHVSAGGGVDGSKACRLESLKNLEHLQVCCIRRLGDVSDVGEAKLLELDKKKYLSR 726 (938)
Q Consensus 647 ~~~~~~~~~p~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~~~~L~~ 726 (938)
++|... .+| ..++|++|++++|.+.... ...+++|+.|++.+|.+....+. .+..+++|+.
T Consensus 88 s~n~l~-~l~----~~~~L~~L~l~~n~l~~~~-------~~~~~~L~~L~l~~N~l~~~~~~-------~~~~l~~L~~ 148 (317)
T 3o53_A 88 NNNYVQ-ELL----VGPSIETLHAANNNISRVS-------CSRGQGKKNIYLANNKITMLRDL-------DEGCRSRVQY 148 (317)
T ss_dssp CSSEEE-EEE----ECTTCCEEECCSSCCSEEE-------ECCCSSCEEEECCSSCCCSGGGB-------CTGGGSSEEE
T ss_pred cCCccc-ccc----CCCCcCEEECCCCccCCcC-------ccccCCCCEEECCCCCCCCccch-------hhhccCCCCE
Confidence 999543 333 3489999999988876521 23467889999988877654332 4567789999
Q ss_pred eEEEEecCCCCCCCCCccchHHHHhhC-CCCCCCCeEEEeeecCCCCCCCchhccCCCCEEEEecCCCCCcCCCCCCCCc
Q 002308 727 LRLEFDKKGGGGGRRKNEDDQLLLEAL-QPPLNLKELEIHYYGGNTVFPSWMASLTNLKSLDLCFCENCEQLPPLGKLPS 805 (938)
Q Consensus 727 L~L~~~~~~~~~~~~~~~~~~~~~~~l-~~~~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~l~~l~~l~~ 805 (938)
|++++|.+... .+..+ ..+++|+.|++++|.+.. +|.. ..+++|+.|+|++|.+....+.+..+++
T Consensus 149 L~Ls~N~l~~~-----------~~~~~~~~l~~L~~L~L~~N~l~~-~~~~-~~l~~L~~L~Ls~N~l~~l~~~~~~l~~ 215 (317)
T 3o53_A 149 LDLKLNEIDTV-----------NFAELAASSDTLEHLNLQYNFIYD-VKGQ-VVFAKLKTLDLSSNKLAFMGPEFQSAAG 215 (317)
T ss_dssp EECTTSCCCEE-----------EGGGGGGGTTTCCEEECTTSCCCE-EECC-CCCTTCCEEECCSSCCCEECGGGGGGTT
T ss_pred EECCCCCCCcc-----------cHHHHhhccCcCCEEECCCCcCcc-cccc-cccccCCEEECCCCcCCcchhhhcccCc
Confidence 99999887641 12223 356889999999999887 5543 3588999999999987765555888999
Q ss_pred cceeecccccCceEeCcccccCCCCCCCCCCCCcccccCCccceeeccccccccccccccccccccccccccccceeccc
Q 002308 806 LEQLFISYMSSVKRVGDEFLGVESDRHDSSSSSSVIIAFPKLKSLSIFEMEELEEWDYGITRTGNTFINIMPRLSSLTIN 885 (938)
Q Consensus 806 L~~L~L~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~~~~~~~~~~~~~~~~l~~L~~L~l~ 885 (938)
|+.|++++|. ++.+|..+. .+++|+.|++.+++- . ....+.++..+++|+.|++.
T Consensus 216 L~~L~L~~N~-l~~l~~~~~-----------------~l~~L~~L~l~~N~~-~------~~~~~~~~~~~~~L~~l~l~ 270 (317)
T 3o53_A 216 VTWISLRNNK-LVLIEKALR-----------------FSQNLEHFDLRGNGF-H------CGTLRDFFSKNQRVQTVAKQ 270 (317)
T ss_dssp CSEEECTTSC-CCEECTTCC-----------------CCTTCCEEECTTCCC-B------HHHHHHHHHTCHHHHHHHHH
T ss_pred ccEEECcCCc-ccchhhHhh-----------------cCCCCCEEEccCCCc-c------CcCHHHHHhccccceEEECC
Confidence 9999999987 667765432 578899999888652 1 01122344578999999999
Q ss_pred ccccccCCCC
Q 002308 886 YCSKLKALPD 895 (938)
Q Consensus 886 ~c~~l~~lp~ 895 (938)
+|+.++..+.
T Consensus 271 ~~~~l~~~~~ 280 (317)
T 3o53_A 271 TVKKLTGQNE 280 (317)
T ss_dssp HHHHHHSSSS
T ss_pred CchhccCCch
Confidence 8887776543
No 69
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.79 E-value=9.4e-20 Score=207.32 Aligned_cols=215 Identities=16% Similarity=0.053 Sum_probs=153.5
Q ss_pred CCCeeEEecCCCCCCcccCccccccCCCCeeeecCCccccccccccCCCCccEEEcCCCCCcccccccccccCccceeec
Q 002308 567 STSLRALDFPSFYLPLEIPRNIEKLVHLRYLNLSDQKIKKLPETLCELYNLEKLDISGCSDLRELPKGIGKLINMKHLLN 646 (938)
Q Consensus 567 ~~~Lr~L~L~~n~~~~~lp~~~~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~l~~~~~l~~lp~~i~~l~~L~~L~l 646 (938)
+++|++|+|++|.+....|..|+.+++|++|+|++|.++..++ ++.+++|++|++++|. +..+|. .++|++|++
T Consensus 33 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~-l~~l~~----~~~L~~L~L 106 (487)
T 3oja_A 33 AWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNY-VQELLV----GPSIETLHA 106 (487)
T ss_dssp GGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE-CTTCTTCCEEECCSSE-EEEEEE----CTTCCEEEC
T ss_pred CCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc-cccCCCCCEEEecCCc-CCCCCC----CCCcCEEEC
Confidence 3477788888777555556677777788888888777775554 7777788888888776 444443 367777888
Q ss_pred CCCcccccCCccCCCCCCCcccCeeEecCCCCCCCCcccccccccccccCcceeecCcCCCCChhhhhhhhcc-CCCcCC
Q 002308 647 SGTRSLRYMPVGIGRLTGLRTLGEFHVSAGGGVDGSKACRLESLKNLEHLQVCCIRRLGDVSDVGEAKLLELD-KKKYLS 725 (938)
Q Consensus 647 ~~~~~~~~~p~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~-~~~~L~ 725 (938)
++|.+....+. .+++|+.|++++|.+....+ ..+..+++|+.|++++|.+.+..+. .+. .+++|+
T Consensus 107 ~~N~l~~~~~~---~l~~L~~L~L~~N~l~~~~~----~~~~~l~~L~~L~Ls~N~l~~~~~~-------~l~~~l~~L~ 172 (487)
T 3oja_A 107 ANNNISRVSCS---RGQGKKNIYLANNKITMLRD----LDEGCRSRVQYLDLKLNEIDTVNFA-------ELAASSDTLE 172 (487)
T ss_dssp CSSCCCCEEEC---CCSSCEEEECCSSCCCSGGG----BCGGGGSSEEEEECTTSCCCEEEGG-------GGGGGTTTCC
T ss_pred cCCcCCCCCcc---ccCCCCEEECCCCCCCCCCc----hhhcCCCCCCEEECCCCCCCCcChH-------HHhhhCCccc
Confidence 77755443332 35677777777777665322 2356677777787777766543322 232 567888
Q ss_pred ceEEEEecCCCCCCCCCccchHHHHhhCCCCCCCCeEEEeeecCCCCCCCchhccCCCCEEEEecCCCCCcCCCCCCCCc
Q 002308 726 RLRLEFDKKGGGGGRRKNEDDQLLLEALQPPLNLKELEIHYYGGNTVFPSWMASLTNLKSLDLCFCENCEQLPPLGKLPS 805 (938)
Q Consensus 726 ~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~l~~l~~l~~ 805 (938)
.|+|++|.+.+ + .....+++|+.|+|++|.+++ +|..+..+++|+.|+|++|.+....+.++.+++
T Consensus 173 ~L~Ls~N~l~~------------~-~~~~~l~~L~~L~Ls~N~l~~-~~~~~~~l~~L~~L~Ls~N~l~~lp~~l~~l~~ 238 (487)
T 3oja_A 173 HLNLQYNFIYD------------V-KGQVVFAKLKTLDLSSNKLAF-MGPEFQSAAGVTWISLRNNKLVLIEKALRFSQN 238 (487)
T ss_dssp EEECTTSCCCE------------E-ECCCCCTTCCEEECCSSCCCE-ECGGGGGGTTCSEEECTTSCCCEECTTCCCCTT
T ss_pred EEecCCCcccc------------c-cccccCCCCCEEECCCCCCCC-CCHhHcCCCCccEEEecCCcCcccchhhccCCC
Confidence 88888888765 1 234457899999999999988 777788999999999999987754444889999
Q ss_pred cceeeccccc
Q 002308 806 LEQLFISYMS 815 (938)
Q Consensus 806 L~~L~L~~~~ 815 (938)
|+.|++++|+
T Consensus 239 L~~L~l~~N~ 248 (487)
T 3oja_A 239 LEHFDLRGNG 248 (487)
T ss_dssp CCEEECTTCC
T ss_pred CCEEEcCCCC
Confidence 9999999987
No 70
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.79 E-value=1.1e-20 Score=202.50 Aligned_cols=252 Identities=17% Similarity=0.153 Sum_probs=156.1
Q ss_pred cccCceeEEeccCCCCCCCCchhhHHHHHhccCCCeeEEecCCCCC-CcccCcccc-------ccCCCCeeeecCCccc-
Q 002308 535 CRAKRIRSLLIEWPEFGHSSLNGEILEELFRESTSLRALDFPSFYL-PLEIPRNIE-------KLVHLRYLNLSDQKIK- 605 (938)
Q Consensus 535 ~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~n~~-~~~lp~~~~-------~l~~L~~L~L~~~~i~- 605 (938)
...++|+.|.+.+|.+ . ++..+... |++|+|++|.+ ...+|..+. ++++|++|+|++|.++
T Consensus 40 ~~~~~L~~l~l~~n~l---~----~p~~~~~~---L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~ 109 (312)
T 1wwl_A 40 GGGRSLEYLLKRVDTE---A----DLGQFTDI---IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTG 109 (312)
T ss_dssp EEEEECTTHHHHCCTT---C----CCHHHHHH---HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBS
T ss_pred ccCCCceeEeeccccc---c----cHHHHHHH---HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccc
Confidence 3445566666665554 1 12221111 66666666664 223444443 5666777777776666
Q ss_pred cccccc--cCCCCccEEEcCCCCCccccccccccc-----CccceeecCCCcccccCCccCCCCCCCcccCeeEecCCCC
Q 002308 606 KLPETL--CELYNLEKLDISGCSDLRELPKGIGKL-----INMKHLLNSGTRSLRYMPVGIGRLTGLRTLGEFHVSAGGG 678 (938)
Q Consensus 606 ~lp~~i--~~l~~L~~L~l~~~~~l~~lp~~i~~l-----~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~~~~~ 678 (938)
.+|..+ ..+++|++|++++|. +..+|..+..+ ++|++|++++|......|..++++++|++|++++|.+.+.
T Consensus 110 ~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~ 188 (312)
T 1wwl_A 110 TAPPPLLEATGPDLNILNLRNVS-WATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGE 188 (312)
T ss_dssp CCCCCSSSCCSCCCSEEEEESCB-CSSSSSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHH
T ss_pred hhHHHHHHhcCCCccEEEccCCC-CcchhHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcc
Confidence 556554 666677777777666 33336555555 6677777766655544445666667777776666654321
Q ss_pred CCCCcccccccccccccCcceeecCcCCCCChhhhhhhhccCCCcCCceEEEEecCCCCCCCCCccchHHHHhhCCCCCC
Q 002308 679 VDGSKACRLESLKNLEHLQVCCIRRLGDVSDVGEAKLLELDKKKYLSRLRLEFDKKGGGGGRRKNEDDQLLLEALQPPLN 758 (938)
Q Consensus 679 ~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 758 (938)
.+......+..+++|+.|++.+|.+.. ........+..+++|+.|++++|.+.+.. ....+..+++
T Consensus 189 ~~~~~~~~~~~l~~L~~L~L~~N~l~~----~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~----------~~~~~~~l~~ 254 (312)
T 1wwl_A 189 RGLISALCPLKFPTLQVLALRNAGMET----PSGVCSALAAARVQLQGLDLSHNSLRDAA----------GAPSCDWPSQ 254 (312)
T ss_dssp HHHHHHSCTTSCTTCCEEECTTSCCCC----HHHHHHHHHHTTCCCSEEECTTSCCCSSC----------CCSCCCCCTT
T ss_pred hHHHHHHHhccCCCCCEEECCCCcCcc----hHHHHHHHHhcCCCCCEEECCCCcCCccc----------chhhhhhcCC
Confidence 000000012556677777776665431 11112223456678888888888876510 0123445689
Q ss_pred CCeEEEeeecCCCCCCCchhccCCCCEEEEecCCCCCcCCCCCCCCccceeeccccc
Q 002308 759 LKELEIHYYGGNTVFPSWMASLTNLKSLDLCFCENCEQLPPLGKLPSLEQLFISYMS 815 (938)
Q Consensus 759 L~~L~l~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~l~~l~~l~~L~~L~L~~~~ 815 (938)
|+.|++++|.++. +|.++. ++|+.|+|++|.+.+. |.+..+++|+.|++++|+
T Consensus 255 L~~L~Ls~N~l~~-ip~~~~--~~L~~L~Ls~N~l~~~-p~~~~l~~L~~L~L~~N~ 307 (312)
T 1wwl_A 255 LNSLNLSFTGLKQ-VPKGLP--AKLSVLDLSYNRLDRN-PSPDELPQVGNLSLKGNP 307 (312)
T ss_dssp CCEEECTTSCCSS-CCSSCC--SEEEEEECCSSCCCSC-CCTTTSCEEEEEECTTCT
T ss_pred CCEEECCCCccCh-hhhhcc--CCceEEECCCCCCCCC-hhHhhCCCCCEEeccCCC
Confidence 9999999999986 888776 8999999999987665 669999999999999987
No 71
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.78 E-value=3.5e-21 Score=227.16 Aligned_cols=352 Identities=18% Similarity=0.128 Sum_probs=182.4
Q ss_pred ccceEEEEccCC-Cc--CcccccccCceeEEeccCCCCCCCCchhhHHHHHhccCCCeeEEecCCCCCC----cccCccc
Q 002308 516 KVRHLMLIMGKE-ST--FPISTCRAKRIRSLLIEWPEFGHSSLNGEILEELFRESTSLRALDFPSFYLP----LEIPRNI 588 (938)
Q Consensus 516 ~~r~l~l~~~~~-~~--~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~n~~~----~~lp~~~ 588 (938)
.++++.+.++.. .. ++.....+++|++|.+.+|.+.... ..+.+.++..+++|+.|+|++|.+. ..++..+
T Consensus 139 ~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~--~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~ 216 (592)
T 3ogk_B 139 DLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKD--GKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIA 216 (592)
T ss_dssp GCCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCC--SHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHH
T ss_pred cCcEEECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcc--hhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHH
Confidence 366666665541 11 2222335677777777776543222 2223444566777777777777643 2344455
Q ss_pred cccCCCCeeeecCCccccccccccCCCCccEEEcCCCCCc---ccccccccccCccceeecCCCcccccCCccCCCCCCC
Q 002308 589 EKLVHLRYLNLSDQKIKKLPETLCELYNLEKLDISGCSDL---RELPKGIGKLINMKHLLNSGTRSLRYMPVGIGRLTGL 665 (938)
Q Consensus 589 ~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~l~~~~~l---~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L 665 (938)
.++++|++|++++|.+..+|..+.++++|+.|+++++... ...+..+..+++|+.|+++++ ....+|..+..+++|
T Consensus 217 ~~~~~L~~L~L~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~-~~~~l~~~~~~~~~L 295 (592)
T 3ogk_B 217 RNCRSLVSVKVGDFEILELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYM-GPNEMPILFPFAAQI 295 (592)
T ss_dssp HHCTTCCEEECSSCBGGGGHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTC-CTTTGGGGGGGGGGC
T ss_pred hhCCCCcEEeccCccHHHHHHHHhhhhHHHhhcccccccccchHHHHHHhhccccccccCcccc-chhHHHHHHhhcCCC
Confidence 6677777777777777777777777777777777643322 233345566666777766654 334455556666677
Q ss_pred cccCeeEecCCCCCCCCcccccccccccccCcceeecCcCCCCChhhhhhhhccCCCcCCceEEEE-----------ecC
Q 002308 666 RTLGEFHVSAGGGVDGSKACRLESLKNLEHLQVCCIRRLGDVSDVGEAKLLELDKKKYLSRLRLEF-----------DKK 734 (938)
Q Consensus 666 ~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~-----------~~~ 734 (938)
+.|++++|.+... .....+..+++|+.|++.++ .. ..........+++|+.|+++. +.+
T Consensus 296 ~~L~Ls~~~l~~~---~~~~~~~~~~~L~~L~L~~~-~~------~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~ 365 (592)
T 3ogk_B 296 RKLDLLYALLETE---DHCTLIQKCPNLEVLETRNV-IG------DRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLV 365 (592)
T ss_dssp CEEEETTCCCCHH---HHHHHHTTCTTCCEEEEEGG-GH------HHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCC
T ss_pred cEEecCCCcCCHH---HHHHHHHhCcCCCEEeccCc-cC------HHHHHHHHHhCCCCCEEEeecCccccccccccCcc
Confidence 7777766653220 00112345666666665521 10 011122234566677777772 222
Q ss_pred CCCCCCCCccchHHHHhhCCCCCCCCeEEEeeecCCCCCCCchhc-cCCCCEEEEecCC---CCCcCC------C-CCCC
Q 002308 735 GGGGGRRKNEDDQLLLEALQPPLNLKELEIHYYGGNTVFPSWMAS-LTNLKSLDLCFCE---NCEQLP------P-LGKL 803 (938)
Q Consensus 735 ~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~p~~~~~-l~~L~~L~L~~~~---~~~~l~------~-l~~l 803 (938)
+ ...+......+++|++|+++.+.+++..+..+.. +++|+.|+|+++. .....| . +.++
T Consensus 366 ~----------~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~ 435 (592)
T 3ogk_B 366 S----------QRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGC 435 (592)
T ss_dssp C----------HHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHC
T ss_pred C----------HHHHHHHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhC
Confidence 2 1223333334567777777666655433334443 6777777776322 222211 1 3456
Q ss_pred CccceeecccccCceEeCcccccCCCCCCCCCCCCcccccCCccceeeccccccccccccccccccccccccccccceec
Q 002308 804 PSLEQLFISYMSSVKRVGDEFLGVESDRHDSSSSSSVIIAFPKLKSLSIFEMEELEEWDYGITRTGNTFINIMPRLSSLT 883 (938)
Q Consensus 804 ~~L~~L~L~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~~~~~~~~~~~~~~~~l~~L~~L~ 883 (938)
++|+.|++++|.. .+.+.... .....+++|+.|.+.++. +... ..+.++..+++|++|+
T Consensus 436 ~~L~~L~L~~~~~--~l~~~~~~------------~~~~~~~~L~~L~L~~n~-l~~~------~~~~~~~~~~~L~~L~ 494 (592)
T 3ogk_B 436 KKLRRFAFYLRQG--GLTDLGLS------------YIGQYSPNVRWMLLGYVG-ESDE------GLMEFSRGCPNLQKLE 494 (592)
T ss_dssp TTCCEEEEECCGG--GCCHHHHH------------HHHHSCTTCCEEEECSCC-SSHH------HHHHHHTCCTTCCEEE
T ss_pred CCCCEEEEecCCC--CccHHHHH------------HHHHhCccceEeeccCCC-CCHH------HHHHHHhcCcccCeee
Confidence 7777777765442 11111000 001135666666666543 2110 0111223556667777
Q ss_pred ccccccccC--CCCCCCCCCCcCEEEEecCc
Q 002308 884 INYCSKLKA--LPDHIHQTTTLKELRIGECD 912 (938)
Q Consensus 884 l~~c~~l~~--lp~~l~~l~~L~~L~l~~c~ 912 (938)
|++|+ ++. ++..+..+++|++|++++|+
T Consensus 495 l~~n~-l~~~~~~~~~~~l~~L~~L~ls~n~ 524 (592)
T 3ogk_B 495 MRGCC-FSERAIAAAVTKLPSLRYLWVQGYR 524 (592)
T ss_dssp EESCC-CBHHHHHHHHHHCSSCCEEEEESCB
T ss_pred ccCCC-CcHHHHHHHHHhcCccCeeECcCCc
Confidence 77665 221 23333345666667776666
No 72
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.77 E-value=4.4e-20 Score=197.87 Aligned_cols=202 Identities=17% Similarity=0.142 Sum_probs=131.7
Q ss_pred hccCCCeeEEecCCCCCCcccCccccccCCCCeeeecCCccc--ccccccc-------CCCCccEEEcCCCCCccccccc
Q 002308 564 FRESTSLRALDFPSFYLPLEIPRNIEKLVHLRYLNLSDQKIK--KLPETLC-------ELYNLEKLDISGCSDLRELPKG 634 (938)
Q Consensus 564 ~~~~~~Lr~L~L~~n~~~~~lp~~~~~l~~L~~L~L~~~~i~--~lp~~i~-------~l~~L~~L~l~~~~~l~~lp~~ 634 (938)
+...++|+.|++++|.+ .+|..+... |++|+|++|.+. .+|..+. ++++|++|++++|.....+|..
T Consensus 39 ~~~~~~L~~l~l~~n~l--~~p~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~ 114 (312)
T 1wwl_A 39 YGGGRSLEYLLKRVDTE--ADLGQFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPP 114 (312)
T ss_dssp EEEEEECTTHHHHCCTT--CCCHHHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCC
T ss_pred EccCCCceeEeeccccc--ccHHHHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHH
Confidence 45667788888888885 667666654 888888888875 4666555 6788888888888755577776
Q ss_pred c--cccCccceeecCCCcccccCCccCCCC-----CCCcccCeeEecCCCCCCCCcccccccccccccCcceeecCcCCC
Q 002308 635 I--GKLINMKHLLNSGTRSLRYMPVGIGRL-----TGLRTLGEFHVSAGGGVDGSKACRLESLKNLEHLQVCCIRRLGDV 707 (938)
Q Consensus 635 i--~~l~~L~~L~l~~~~~~~~~p~~l~~l-----~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~ 707 (938)
+ ..+++|++|++++|..... |..++.+ ++|++|++++|.+... .
T Consensus 115 ~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~----------------------------~ 165 (312)
T 1wwl_A 115 LLEATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNF----------------------------S 165 (312)
T ss_dssp SSSCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCC----------------------------C
T ss_pred HHHhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccc----------------------------h
Confidence 5 7788888888888755443 6555554 6666666666655432 1
Q ss_pred CChhhhhhhhccCCCcCCceEEEEecCCCCCCCCCccchHHHHhhC--CCCCCCCeEEEeeecCCCCCCC----chhccC
Q 002308 708 SDVGEAKLLELDKKKYLSRLRLEFDKKGGGGGRRKNEDDQLLLEAL--QPPLNLKELEIHYYGGNTVFPS----WMASLT 781 (938)
Q Consensus 708 ~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l--~~~~~L~~L~l~~~~~~~~~p~----~~~~l~ 781 (938)
+. .+..+++|+.|++++|.+.+ ....+..+ ..+++|++|++++|.+.. ++. .+..++
T Consensus 166 ~~-------~~~~l~~L~~L~Ls~N~l~~---------~~~~~~~~~~~~l~~L~~L~L~~N~l~~-~~~~~~~~~~~l~ 228 (312)
T 1wwl_A 166 CE-------QVRVFPALSTLDLSDNPELG---------ERGLISALCPLKFPTLQVLALRNAGMET-PSGVCSALAAARV 228 (312)
T ss_dssp TT-------TCCCCSSCCEEECCSCTTCH---------HHHHHHHSCTTSCTTCCEEECTTSCCCC-HHHHHHHHHHTTC
T ss_pred HH-------HhccCCCCCEEECCCCCcCc---------chHHHHHHHhccCCCCCEEECCCCcCcc-hHHHHHHHHhcCC
Confidence 11 23344555555555554332 11123333 667788888888887774 332 233668
Q ss_pred CCCEEEEecCCCCCcCC--CCCCCCccceeeccccc
Q 002308 782 NLKSLDLCFCENCEQLP--PLGKLPSLEQLFISYMS 815 (938)
Q Consensus 782 ~L~~L~L~~~~~~~~l~--~l~~l~~L~~L~L~~~~ 815 (938)
+|+.|+|++|.+....| .+..+++|+.|+|++|.
T Consensus 229 ~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~ 264 (312)
T 1wwl_A 229 QLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTG 264 (312)
T ss_dssp CCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSC
T ss_pred CCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCc
Confidence 88888888887766553 36667888888888776
No 73
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.77 E-value=1.8e-20 Score=213.20 Aligned_cols=237 Identities=16% Similarity=0.063 Sum_probs=186.4
Q ss_pred ccCceeEEeccCCCCCCCCchhhHHHHHhccCCCeeEEecCCCCCCcccCccccccCCCCeeeecCCccccccccccCCC
Q 002308 536 RAKRIRSLLIEWPEFGHSSLNGEILEELFRESTSLRALDFPSFYLPLEIPRNIEKLVHLRYLNLSDQKIKKLPETLCELY 615 (938)
Q Consensus 536 ~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~n~~~~~lp~~~~~l~~L~~L~L~~~~i~~lp~~i~~l~ 615 (938)
.+++|+.|++++|.+.. +++..|..+++|++|+|++|.+.+..| ++.+++|++|+|++|.++.+|.. +
T Consensus 32 ~~~~L~~L~Ls~n~l~~------~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~~~----~ 99 (487)
T 3oja_A 32 SAWNVKELDLSGNPLSQ------ISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELLVG----P 99 (487)
T ss_dssp TGGGCCEEECCSSCCCC------CCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEEEC----T
T ss_pred cCCCccEEEeeCCcCCC------CCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCCCC----C
Confidence 44589999999887632 344457889999999999998554444 88899999999999998877743 8
Q ss_pred CccEEEcCCCCCcccccccccccCccceeecCCCcccccCCccCCCCCCCcccCeeEecCCCCCCCCcccccc-cccccc
Q 002308 616 NLEKLDISGCSDLRELPKGIGKLINMKHLLNSGTRSLRYMPVGIGRLTGLRTLGEFHVSAGGGVDGSKACRLE-SLKNLE 694 (938)
Q Consensus 616 ~L~~L~l~~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~-~l~~L~ 694 (938)
+|++|++++|. +..+|. ..+++|++|++++|.+....|..++.+++|+.|++++|.+.+..+ ..+. .+++|+
T Consensus 100 ~L~~L~L~~N~-l~~~~~--~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~----~~l~~~l~~L~ 172 (487)
T 3oja_A 100 SIETLHAANNN-ISRVSC--SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNF----AELAASSDTLE 172 (487)
T ss_dssp TCCEEECCSSC-CCCEEE--CCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEG----GGGGGGTTTCC
T ss_pred CcCEEECcCCc-CCCCCc--cccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcCh----HHHhhhCCccc
Confidence 89999999998 444443 346889999999997777677788889999999999888765322 2233 678899
Q ss_pred cCcceeecCcCCCCChhhhhhhhccCCCcCCceEEEEecCCCCCCCCCccchHHHHhhCCCCCCCCeEEEeeecCCCCCC
Q 002308 695 HLQVCCIRRLGDVSDVGEAKLLELDKKKYLSRLRLEFDKKGGGGGRRKNEDDQLLLEALQPPLNLKELEIHYYGGNTVFP 774 (938)
Q Consensus 695 ~L~l~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~p 774 (938)
.|++++|.+.... ....+++|+.|+|++|.+.+ ++..+..+++|+.|++++|.+.+ +|
T Consensus 173 ~L~Ls~N~l~~~~---------~~~~l~~L~~L~Ls~N~l~~------------~~~~~~~l~~L~~L~Ls~N~l~~-lp 230 (487)
T 3oja_A 173 HLNLQYNFIYDVK---------GQVVFAKLKTLDLSSNKLAF------------MGPEFQSAAGVTWISLRNNKLVL-IE 230 (487)
T ss_dssp EEECTTSCCCEEE---------CCCCCTTCCEEECCSSCCCE------------ECGGGGGGTTCSEEECTTSCCCE-EC
T ss_pred EEecCCCcccccc---------ccccCCCCCEEECCCCCCCC------------CCHhHcCCCCccEEEecCCcCcc-cc
Confidence 9999888765442 23357899999999998875 44457778999999999999998 89
Q ss_pred CchhccCCCCEEEEecCCCC-CcCCC-CCCCCccceeeccc
Q 002308 775 SWMASLTNLKSLDLCFCENC-EQLPP-LGKLPSLEQLFISY 813 (938)
Q Consensus 775 ~~~~~l~~L~~L~L~~~~~~-~~l~~-l~~l~~L~~L~L~~ 813 (938)
.++..+++|+.|+|++|.+. ..+|. ++.++.|+.|++..
T Consensus 231 ~~l~~l~~L~~L~l~~N~l~c~~~~~~~~~l~~L~~l~~~~ 271 (487)
T 3oja_A 231 KALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQT 271 (487)
T ss_dssp TTCCCCTTCCEEECTTCCBCHHHHHHHHTTCHHHHHHHHHH
T ss_pred hhhccCCCCCEEEcCCCCCcCcchHHHHHhCCCCcEEeccc
Confidence 99999999999999999876 44444 78899999998863
No 74
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.77 E-value=3.1e-20 Score=219.01 Aligned_cols=355 Identities=12% Similarity=0.091 Sum_probs=238.4
Q ss_pred cccceEEEEccCCCc-Ccccccc-cCc-eeEEeccCCCCCCCCchhhHHHHHhccCCCeeEEecCCCCCCcc----cCcc
Q 002308 515 EKVRHLMLIMGKEST-FPISTCR-AKR-IRSLLIEWPEFGHSSLNGEILEELFRESTSLRALDFPSFYLPLE----IPRN 587 (938)
Q Consensus 515 ~~~r~l~l~~~~~~~-~~~~~~~-~~~-Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~n~~~~~----lp~~ 587 (938)
+.++.+++.++.+.. ....+.. +++ |+.|.+.+|.. +...........+++|++|+|++|.+... ++..
T Consensus 112 ~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~~----~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~ 187 (592)
T 3ogk_B 112 RQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCSG----FTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHEL 187 (592)
T ss_dssp TTCCEEEEESCBCCHHHHHHHHHHHGGGCCEEEEESCEE----EEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHH
T ss_pred CCCCeEEeeccEecHHHHHHHHHhccccCcEEECcCCCC----cCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHH
Confidence 678999999887664 2233333 445 99999988751 22333455567899999999999985433 4445
Q ss_pred ccccCCCCeeeecCCccc-----cccccccCCCCccEEEcCCCCCcccccccccccCccceeecCCCccc---ccCCccC
Q 002308 588 IEKLVHLRYLNLSDQKIK-----KLPETLCELYNLEKLDISGCSDLRELPKGIGKLINMKHLLNSGTRSL---RYMPVGI 659 (938)
Q Consensus 588 ~~~l~~L~~L~L~~~~i~-----~lp~~i~~l~~L~~L~l~~~~~l~~lp~~i~~l~~L~~L~l~~~~~~---~~~p~~l 659 (938)
+..+++|++|++++|.++ .++..+.++++|++|++++|. +..+|..+..+++|++|+++.+... ...+..+
T Consensus 188 ~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~-~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l 266 (592)
T 3ogk_B 188 AQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFE-ILELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNL 266 (592)
T ss_dssp HHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCB-GGGGHHHHHHCTTCCEEEECBCCCCTTCTTSSSCC
T ss_pred HhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCcc-HHHHHHHHhhhhHHHhhcccccccccchHHHHHHh
Confidence 667899999999999886 556667889999999999988 6668888999999999999854332 2344557
Q ss_pred CCCCCCcccCeeEecCCCCCCCCcccccccccccccCcceeecCcCCCCChhhhhhhhccCCCcCCceEEEEecCCCCCC
Q 002308 660 GRLTGLRTLGEFHVSAGGGVDGSKACRLESLKNLEHLQVCCIRRLGDVSDVGEAKLLELDKKKYLSRLRLEFDKKGGGGG 739 (938)
Q Consensus 660 ~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~ 739 (938)
..+++|+.|++..+... .+...+..+++|++|++++|.... ......+..+++|+.|+++ +.+.
T Consensus 267 ~~~~~L~~L~l~~~~~~-----~l~~~~~~~~~L~~L~Ls~~~l~~------~~~~~~~~~~~~L~~L~L~-~~~~---- 330 (592)
T 3ogk_B 267 VFPRKLCRLGLSYMGPN-----EMPILFPFAAQIRKLDLLYALLET------EDHCTLIQKCPNLEVLETR-NVIG---- 330 (592)
T ss_dssp CCCTTCCEEEETTCCTT-----TGGGGGGGGGGCCEEEETTCCCCH------HHHHHHHTTCTTCCEEEEE-GGGH----
T ss_pred hccccccccCccccchh-----HHHHHHhhcCCCcEEecCCCcCCH------HHHHHHHHhCcCCCEEecc-CccC----
Confidence 78888888877654322 234456778899999998876321 1122346788999999998 4332
Q ss_pred CCCccchHHHHhhCCCCCCCCeEEEee-----------ecCCCC-CCCchhccCCCCEEEEecCCCCCcCCC-CCC-CCc
Q 002308 740 RRKNEDDQLLLEALQPPLNLKELEIHY-----------YGGNTV-FPSWMASLTNLKSLDLCFCENCEQLPP-LGK-LPS 805 (938)
Q Consensus 740 ~~~~~~~~~~~~~l~~~~~L~~L~l~~-----------~~~~~~-~p~~~~~l~~L~~L~L~~~~~~~~l~~-l~~-l~~ 805 (938)
...+......+++|++|++++ +.++.. ++.....+++|++|+++.|.+.+..+. ++. +++
T Consensus 331 ------~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~ 404 (592)
T 3ogk_B 331 ------DRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKN 404 (592)
T ss_dssp ------HHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCS
T ss_pred ------HHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHHhhCCC
Confidence 233444455678999999993 333321 223344689999999977766543322 444 899
Q ss_pred cceeecccc---cCceEeCcccccCCCCCCCCCCCCcccccCCccceeecccccc-ccccccccccccccccccccccce
Q 002308 806 LEQLFISYM---SSVKRVGDEFLGVESDRHDSSSSSSVIIAFPKLKSLSIFEMEE-LEEWDYGITRTGNTFINIMPRLSS 881 (938)
Q Consensus 806 L~~L~L~~~---~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~~~~-L~~~~~~~~~~~~~~~~~l~~L~~ 881 (938)
|+.|++++| ..++..|..-. . ......+++|+.|+++.|.+ +..... ......+++|+.
T Consensus 405 L~~L~l~~~~~~n~l~~~p~~~~-~----------~~~~~~~~~L~~L~L~~~~~~l~~~~~------~~~~~~~~~L~~ 467 (592)
T 3ogk_B 405 LCDFRLVLLDREERITDLPLDNG-V----------RSLLIGCKKLRRFAFYLRQGGLTDLGL------SYIGQYSPNVRW 467 (592)
T ss_dssp CCEEEEEECSCCSCCSSCCCHHH-H----------HHHHHHCTTCCEEEEECCGGGCCHHHH------HHHHHSCTTCCE
T ss_pred CcEEEEeecCCCccccCchHHHH-H----------HHHHHhCCCCCEEEEecCCCCccHHHH------HHHHHhCccceE
Confidence 999999853 33333221100 0 00123588999999976653 221111 111225899999
Q ss_pred eccccccccc-CCCCCCCCCCCcCEEEEecCcc
Q 002308 882 LTINYCSKLK-ALPDHIHQTTTLKELRIGECDL 913 (938)
Q Consensus 882 L~l~~c~~l~-~lp~~l~~l~~L~~L~l~~c~~ 913 (938)
|+|++|+.-. .++..+..+++|++|+|++|+.
T Consensus 468 L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l 500 (592)
T 3ogk_B 468 MLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCF 500 (592)
T ss_dssp EEECSCCSSHHHHHHHHTCCTTCCEEEEESCCC
T ss_pred eeccCCCCCHHHHHHHHhcCcccCeeeccCCCC
Confidence 9999876322 2444456789999999999993
No 75
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.71 E-value=3.3e-19 Score=210.42 Aligned_cols=369 Identities=15% Similarity=0.078 Sum_probs=199.2
Q ss_pred cccceEEEEccCCCc-Cccccc-ccCceeEEeccCCCCCCCCchhhHHHHHhccCCCeeEEecCCCCCCcc----cCccc
Q 002308 515 EKVRHLMLIMGKEST-FPISTC-RAKRIRSLLIEWPEFGHSSLNGEILEELFRESTSLRALDFPSFYLPLE----IPRNI 588 (938)
Q Consensus 515 ~~~r~l~l~~~~~~~-~~~~~~-~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~n~~~~~----lp~~~ 588 (938)
+.++++.+.++.+.. .+..+. .+++|++|.+.+|. .+....++.++..+++|++|+|++|.+... ++...
T Consensus 105 ~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~----~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~ 180 (594)
T 2p1m_B 105 TWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCE----GFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFP 180 (594)
T ss_dssp TTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCE----EEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSC
T ss_pred CCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcC----CCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHh
Confidence 578899999887765 223333 68999999998873 112333556667899999999999984433 33334
Q ss_pred cccCCCCeeeecCCc--cc--cccccccCCCCccEEEcCCCCCcccccccccccCccceeecCCCcc------cccCCcc
Q 002308 589 EKLVHLRYLNLSDQK--IK--KLPETLCELYNLEKLDISGCSDLRELPKGIGKLINMKHLLNSGTRS------LRYMPVG 658 (938)
Q Consensus 589 ~~l~~L~~L~L~~~~--i~--~lp~~i~~l~~L~~L~l~~~~~l~~lp~~i~~l~~L~~L~l~~~~~------~~~~p~~ 658 (938)
..+++|++|++++|. +. .++..+.++++|++|++++|.....+|..+..+++|++|+++.+.. ...++..
T Consensus 181 ~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~ 260 (594)
T 2p1m_B 181 DTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVA 260 (594)
T ss_dssp TTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECSBCCCCCCHHHHHHHHHH
T ss_pred hcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHHHhcCCcceEcccccccCccchhhHHHHHHH
Confidence 467799999999986 32 3444456689999999999966777888888999999998765521 1123334
Q ss_pred CCCCCCCccc-CeeEecCCCCCCCCcccccccccccccCcceeecCcCCCCChhhhhhhhccCCCcCCceEEEEecCCCC
Q 002308 659 IGRLTGLRTL-GEFHVSAGGGVDGSKACRLESLKNLEHLQVCCIRRLGDVSDVGEAKLLELDKKKYLSRLRLEFDKKGGG 737 (938)
Q Consensus 659 l~~l~~L~~L-~l~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~ 737 (938)
+.++++|+.| .+..... ..+...+..+++|+.|++.+|.... ......+..+++|+.|++++| +.
T Consensus 261 l~~~~~L~~Ls~~~~~~~-----~~l~~~~~~~~~L~~L~L~~~~l~~------~~l~~~~~~~~~L~~L~l~~~-~~-- 326 (594)
T 2p1m_B 261 LSGCKELRCLSGFWDAVP-----AYLPAVYSVCSRLTTLNLSYATVQS------YDLVKLLCQCPKLQRLWVLDY-IE-- 326 (594)
T ss_dssp HHTCTTCCEEECCBTCCG-----GGGGGGHHHHTTCCEEECTTCCCCH------HHHHHHHTTCTTCCEEEEEGG-GH--
T ss_pred HhcCCCcccccCCcccch-----hhHHHHHHhhCCCCEEEccCCCCCH------HHHHHHHhcCCCcCEEeCcCc-cC--
Confidence 5556666655 2211110 1111222345666666665554211 111122345556666666554 11
Q ss_pred CCCCCccchHHHHhhCCCCCCCCeEEEeee---------cCCCC-CCCchhccCCCCEEEEecCCCCCcCC-CC-CCCCc
Q 002308 738 GGRRKNEDDQLLLEALQPPLNLKELEIHYY---------GGNTV-FPSWMASLTNLKSLDLCFCENCEQLP-PL-GKLPS 805 (938)
Q Consensus 738 ~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~---------~~~~~-~p~~~~~l~~L~~L~L~~~~~~~~l~-~l-~~l~~ 805 (938)
...+......+++|++|++.++ .++.. +......+++|+.|.++.|.+..... .+ ..+|+
T Consensus 327 --------~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~ 398 (594)
T 2p1m_B 327 --------DAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAALITIARNRPN 398 (594)
T ss_dssp --------HHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEEEESCCCHHHHHHHHHHCTT
T ss_pred --------HHHHHHHHHhCCCCCEEEEecCcccccccCCCCCHHHHHHHHHhchhHHHHHHhcCCcCHHHHHHHHhhCCC
Confidence 1112222223455555555332 11110 00011134555555444443322111 12 13455
Q ss_pred cceeecc-----cccCceEeCcc------cccCCCCCCCCCCCCc-------ccccCCccceeecccccccccccccccc
Q 002308 806 LEQLFIS-----YMSSVKRVGDE------FLGVESDRHDSSSSSS-------VIIAFPKLKSLSIFEMEELEEWDYGITR 867 (938)
Q Consensus 806 L~~L~L~-----~~~~l~~~~~~------~~~~~~l~~~~~~~~~-------~~~~~~~L~~L~l~~~~~L~~~~~~~~~ 867 (938)
|+.|+++ +|..++..|.. +.....++.++++.+- ....+++|+.|++.+|. +....
T Consensus 399 L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~~l~~~~~~~l~~~~~~L~~L~L~~~~-i~~~~----- 472 (594)
T 2p1m_B 399 MTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSGLLTDKVFEYIGTYAKKMEMLSVAFAG-DSDLG----- 472 (594)
T ss_dssp CCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHCTTCCEEEEESCC-SSHHH-----
T ss_pred cceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecCcccHHHHHHHHHhchhccEeeccCCC-CcHHH-----
Confidence 5555555 22223221110 1112223333332200 01136778888887764 21111
Q ss_pred ccccccccccccceecccccccccC-CCCCCCCCCCcCEEEEecCcchHH
Q 002308 868 TGNTFINIMPRLSSLTINYCSKLKA-LPDHIHQTTTLKELRIGECDLLEE 916 (938)
Q Consensus 868 ~~~~~~~~l~~L~~L~l~~c~~l~~-lp~~l~~l~~L~~L~l~~c~~l~~ 916 (938)
...+...+++|+.|+|++|+.... ++..+..+++|++|++++|+...+
T Consensus 473 -~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~ 521 (594)
T 2p1m_B 473 -MHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSVSFG 521 (594)
T ss_dssp -HHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEESSCCBHH
T ss_pred -HHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCCCCCHH
Confidence 111124689999999999875221 222345588999999999987443
No 76
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.71 E-value=1.5e-17 Score=174.96 Aligned_cols=132 Identities=20% Similarity=0.143 Sum_probs=70.4
Q ss_pred CceeEEeccCCCCCCCCchhhHHHHHhccCCCeeEEecCCCCCCcccCccccccCCCCeeeecCCcccccc-ccccCCCC
Q 002308 538 KRIRSLLIEWPEFGHSSLNGEILEELFRESTSLRALDFPSFYLPLEIPRNIEKLVHLRYLNLSDQKIKKLP-ETLCELYN 616 (938)
Q Consensus 538 ~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~n~~~~~lp~~~~~l~~L~~L~L~~~~i~~lp-~~i~~l~~ 616 (938)
++|+.|.+++|.+. .+++..|..+++|++|+|++|.+....+..++.+++|++|+|++|.++.++ ..+.++++
T Consensus 28 ~~l~~L~ls~n~l~------~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~ 101 (276)
T 2z62_A 28 FSTKNLDLSFNPLR------HLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSS 101 (276)
T ss_dssp TTCCEEECTTCCCC------EECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTT
T ss_pred CCccEEECCCCccc------ccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCcc
Confidence 35666666655541 122223555666666666666533333345566666666666666665444 34566666
Q ss_pred ccEEEcCCCCCcccccccccccCccceeecCCCcccc-cCCccCCCCCCCcccCeeEecC
Q 002308 617 LEKLDISGCSDLRELPKGIGKLINMKHLLNSGTRSLR-YMPVGIGRLTGLRTLGEFHVSA 675 (938)
Q Consensus 617 L~~L~l~~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~-~~p~~l~~l~~L~~L~l~~~~~ 675 (938)
|++|++++|......+..+..+++|++|++++|.... .+|..++.+++|+.|++++|.+
T Consensus 102 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l 161 (276)
T 2z62_A 102 LQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKI 161 (276)
T ss_dssp CCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCC
T ss_pred ccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCC
Confidence 6666666665333333345566666666666654433 2355555555555555555443
No 77
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.71 E-value=2.5e-17 Score=175.75 Aligned_cols=195 Identities=20% Similarity=0.172 Sum_probs=114.3
Q ss_pred CCCeeEEecCCCCCCcccCccccccCCCCeeeecCCccccccccccCCCCccEEEcCCCCCcccccccccccCccceeec
Q 002308 567 STSLRALDFPSFYLPLEIPRNIEKLVHLRYLNLSDQKIKKLPETLCELYNLEKLDISGCSDLRELPKGIGKLINMKHLLN 646 (938)
Q Consensus 567 ~~~Lr~L~L~~n~~~~~lp~~~~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~l~~~~~l~~lp~~i~~l~~L~~L~l 646 (938)
+++|+.|++++|. ...+| .+..+++|++|+|++|.+..++. +..+++|++|++++|. +..+| .+..+++|++|++
T Consensus 40 l~~L~~L~l~~~~-i~~l~-~~~~l~~L~~L~L~~n~i~~~~~-~~~l~~L~~L~L~~n~-l~~~~-~~~~l~~L~~L~l 114 (308)
T 1h6u_A 40 LDGITTLSAFGTG-VTTIE-GVQYLNNLIGLELKDNQITDLAP-LKNLTKITELELSGNP-LKNVS-AIAGLQSIKTLDL 114 (308)
T ss_dssp HHTCCEEECTTSC-CCCCT-TGGGCTTCCEEECCSSCCCCCGG-GTTCCSCCEEECCSCC-CSCCG-GGTTCTTCCEEEC
T ss_pred cCCcCEEEeeCCC-ccCch-hhhccCCCCEEEccCCcCCCChh-HccCCCCCEEEccCCc-CCCch-hhcCCCCCCEEEC
Confidence 4456666666665 33344 45666666666666666666655 6666666666666665 44444 3666666666666
Q ss_pred CCCcccccCCccCCCCCCCcccCeeEecCCCCCCCCcccccccccccccCcceeecCcCCCCChhhhhhhhccCCCcCCc
Q 002308 647 SGTRSLRYMPVGIGRLTGLRTLGEFHVSAGGGVDGSKACRLESLKNLEHLQVCCIRRLGDVSDVGEAKLLELDKKKYLSR 726 (938)
Q Consensus 647 ~~~~~~~~~p~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~~~~L~~ 726 (938)
++|... .+|. +..+++|+.|++++|.+... ..+. .+++|+.
T Consensus 115 ~~n~l~-~~~~-l~~l~~L~~L~l~~n~l~~~------~~l~-------------------------------~l~~L~~ 155 (308)
T 1h6u_A 115 TSTQIT-DVTP-LAGLSNLQVLYLDLNQITNI------SPLA-------------------------------GLTNLQY 155 (308)
T ss_dssp TTSCCC-CCGG-GTTCTTCCEEECCSSCCCCC------GGGG-------------------------------GCTTCCE
T ss_pred CCCCCC-Cchh-hcCCCCCCEEECCCCccCcC------cccc-------------------------------CCCCccE
Confidence 666432 2332 55555555555555443320 0122 2334444
Q ss_pred eEEEEecCCCCCCCCCccchHHHHhhCCCCCCCCeEEEeeecCCCCCCCchhccCCCCEEEEecCCCCCcCCCCCCCCcc
Q 002308 727 LRLEFDKKGGGGGRRKNEDDQLLLEALQPPLNLKELEIHYYGGNTVFPSWMASLTNLKSLDLCFCENCEQLPPLGKLPSL 806 (938)
Q Consensus 727 L~L~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~l~~l~~l~~L 806 (938)
|++++|.+.+ +. .+..+++|+.|++++|.+.+ ++. +..+++|+.|+|++|.+... +.+..+++|
T Consensus 156 L~l~~n~l~~------------~~-~l~~l~~L~~L~l~~n~l~~-~~~-l~~l~~L~~L~L~~N~l~~~-~~l~~l~~L 219 (308)
T 1h6u_A 156 LSIGNAQVSD------------LT-PLANLSKLTTLKADDNKISD-ISP-LASLPNLIEVHLKNNQISDV-SPLANTSNL 219 (308)
T ss_dssp EECCSSCCCC------------CG-GGTTCTTCCEEECCSSCCCC-CGG-GGGCTTCCEEECTTSCCCBC-GGGTTCTTC
T ss_pred EEccCCcCCC------------Ch-hhcCCCCCCEEECCCCccCc-Chh-hcCCCCCCEEEccCCccCcc-ccccCCCCC
Confidence 4444444433 11 15556777777777777776 554 67788888888888866543 347788888
Q ss_pred ceeecccccCceEeCc
Q 002308 807 EQLFISYMSSVKRVGD 822 (938)
Q Consensus 807 ~~L~L~~~~~l~~~~~ 822 (938)
+.|++++|+ +...|.
T Consensus 220 ~~L~l~~N~-i~~~~~ 234 (308)
T 1h6u_A 220 FIVTLTNQT-ITNQPV 234 (308)
T ss_dssp CEEEEEEEE-EECCCE
T ss_pred CEEEccCCe-eecCCe
Confidence 888888877 444443
No 78
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.71 E-value=1.3e-16 Score=166.81 Aligned_cols=196 Identities=21% Similarity=0.181 Sum_probs=106.1
Q ss_pred eeEEecCCCCCCcccCccccccCCCCeeeecCCccccccc-cccCCCCccEEEcCCCCCccccccc-ccccCccceeecC
Q 002308 570 LRALDFPSFYLPLEIPRNIEKLVHLRYLNLSDQKIKKLPE-TLCELYNLEKLDISGCSDLRELPKG-IGKLINMKHLLNS 647 (938)
Q Consensus 570 Lr~L~L~~n~~~~~lp~~~~~l~~L~~L~L~~~~i~~lp~-~i~~l~~L~~L~l~~~~~l~~lp~~-i~~l~~L~~L~l~ 647 (938)
++.++++++. ...+|..+. .+|++|+|++|.++.+|. .+.++++|++|++++|. +..+|.. +..+++|++|+++
T Consensus 18 ~~~l~~~~~~-l~~ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~i~~~~~~~l~~L~~L~l~ 93 (270)
T 2o6q_A 18 KNSVDCSSKK-LTAIPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNK-LQTLPAGIFKELKNLETLWVT 93 (270)
T ss_dssp TTEEECTTSC-CSSCCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSC-CSCCCTTTTSSCTTCCEEECC
T ss_pred CCEEEccCCC-CCccCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCc-cCeeChhhhcCCCCCCEEECC
Confidence 4455555555 333444333 345555555555554443 45555555555555555 3333332 3445555555555
Q ss_pred CCcccccCCccCCCCCCCcccCeeEecCCCCCCCCcccccccccccccCcceeecCcCCCCChhhhhhhhccCCCcCCce
Q 002308 648 GTRSLRYMPVGIGRLTGLRTLGEFHVSAGGGVDGSKACRLESLKNLEHLQVCCIRRLGDVSDVGEAKLLELDKKKYLSRL 727 (938)
Q Consensus 648 ~~~~~~~~p~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~~~~L~~L 727 (938)
+|......+..+..+++|+.|++++|.+....+. .+..+++|+.|
T Consensus 94 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~-----------------------------------~~~~l~~L~~L 138 (270)
T 2o6q_A 94 DNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPR-----------------------------------VFDSLTKLTYL 138 (270)
T ss_dssp SSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTT-----------------------------------TTTTCTTCCEE
T ss_pred CCcCCcCCHhHcccccCCCEEECCCCccCeeCHH-----------------------------------HhCcCcCCCEE
Confidence 5533322222334444455444444433321100 12223334444
Q ss_pred EEEEecCCCCCCCCCccchHHHHhhCCCCCCCCeEEEeeecCCCCCCCchhccCCCCEEEEecCCCCCcCCC-CCCCCcc
Q 002308 728 RLEFDKKGGGGGRRKNEDDQLLLEALQPPLNLKELEIHYYGGNTVFPSWMASLTNLKSLDLCFCENCEQLPP-LGKLPSL 806 (938)
Q Consensus 728 ~L~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~l~~-l~~l~~L 806 (938)
+|++|.+... ....+..+++|+.|++++|.+....+..+..+++|+.|+|++|.+....+. +..+++|
T Consensus 139 ~Ls~n~l~~~-----------~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L 207 (270)
T 2o6q_A 139 SLGYNELQSL-----------PKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKL 207 (270)
T ss_dssp ECCSSCCCCC-----------CTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTC
T ss_pred ECCCCcCCcc-----------CHhHccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcCCHHHhccccCC
Confidence 4444433320 012345567888888888888773444577888999999999877655444 7888999
Q ss_pred ceeeccccc
Q 002308 807 EQLFISYMS 815 (938)
Q Consensus 807 ~~L~L~~~~ 815 (938)
+.|+|++|+
T Consensus 208 ~~L~l~~N~ 216 (270)
T 2o6q_A 208 KMLQLQENP 216 (270)
T ss_dssp CEEECCSSC
T ss_pred CEEEecCCC
Confidence 999998887
No 79
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.70 E-value=3.1e-17 Score=173.10 Aligned_cols=104 Identities=22% Similarity=0.076 Sum_probs=55.2
Q ss_pred CCeeEEecCCCCCCcccCccccccCCCCeeeecCCccccccccccCCCCccEEEcCCCCCcccccccccccCccceeecC
Q 002308 568 TSLRALDFPSFYLPLEIPRNIEKLVHLRYLNLSDQKIKKLPETLCELYNLEKLDISGCSDLRELPKGIGKLINMKHLLNS 647 (938)
Q Consensus 568 ~~Lr~L~L~~n~~~~~lp~~~~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~l~~~~~l~~lp~~i~~l~~L~~L~l~ 647 (938)
+.|++|+|++|.+....|..|..+++|++|+|++|.++.+|.. +.+++|++|++++|. +..+|..+..+++|++|+++
T Consensus 31 ~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~l~~L~~L~Ls~N~-l~~l~~~~~~l~~L~~L~l~ 108 (290)
T 1p9a_G 31 KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD-GTLPVLGTLDLSHNQ-LQSLPLLGQTLPALTVLDVS 108 (290)
T ss_dssp TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECC-SCCTTCCEEECCSSC-CSSCCCCTTTCTTCCEEECC
T ss_pred CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCC-CCCCcCCEEECCCCc-CCcCchhhccCCCCCEEECC
Confidence 3555666666654443445555566666666666665555443 555566666666655 44555555555566666665
Q ss_pred CCcccccCCccCCCCCCCcccCeeEe
Q 002308 648 GTRSLRYMPVGIGRLTGLRTLGEFHV 673 (938)
Q Consensus 648 ~~~~~~~~p~~l~~l~~L~~L~l~~~ 673 (938)
+|.+....|..+..+++|+.|++++|
T Consensus 109 ~N~l~~l~~~~~~~l~~L~~L~L~~N 134 (290)
T 1p9a_G 109 FNRLTSLPLGALRGLGELQELYLKGN 134 (290)
T ss_dssp SSCCCCCCSSTTTTCTTCCEEECTTS
T ss_pred CCcCcccCHHHHcCCCCCCEEECCCC
Confidence 55433322233444444444444443
No 80
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.70 E-value=7.1e-17 Score=169.08 Aligned_cols=202 Identities=21% Similarity=0.132 Sum_probs=108.9
Q ss_pred CCCeeEEecCCCCCCcccCccccccCCCCeeeecCCccccccccccCCCCccEEEcCCCCCcccccccccccCccceeec
Q 002308 567 STSLRALDFPSFYLPLEIPRNIEKLVHLRYLNLSDQKIKKLPETLCELYNLEKLDISGCSDLRELPKGIGKLINMKHLLN 646 (938)
Q Consensus 567 ~~~Lr~L~L~~n~~~~~lp~~~~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~l~~~~~l~~lp~~i~~l~~L~~L~l 646 (938)
+++|+.|++++|. ...++ .++.+++|++|++++|.++.++ .+..+++|++|++++|......|..+..+++|++|++
T Consensus 40 l~~L~~L~l~~~~-i~~~~-~l~~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 116 (272)
T 3rfs_A 40 LNSIDQIIANNSD-IKSVQ-GIQYLPNVRYLALGGNKLHDIS-ALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVL 116 (272)
T ss_dssp HTTCCEEECTTSC-CCCCT-TGGGCTTCCEEECTTSCCCCCG-GGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEEC
T ss_pred ccceeeeeeCCCC-ccccc-ccccCCCCcEEECCCCCCCCch-hhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEEC
Confidence 4455555555555 22222 3455555555555555555443 4555555555555555522222233455555555555
Q ss_pred CCCcccccCCccCCCCCCCcccCeeEecCCCCCCCCcccccccccccccCcceeecCcCCCCChhhhhhhhccCCCcCCc
Q 002308 647 SGTRSLRYMPVGIGRLTGLRTLGEFHVSAGGGVDGSKACRLESLKNLEHLQVCCIRRLGDVSDVGEAKLLELDKKKYLSR 726 (938)
Q Consensus 647 ~~~~~~~~~p~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~~~~L~~ 726 (938)
++|......+..++.+++|+.|++++|.+....+. .+..+++|+.
T Consensus 117 ~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-----------------------------------~~~~l~~L~~ 161 (272)
T 3rfs_A 117 VENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKG-----------------------------------VFDKLTNLTE 161 (272)
T ss_dssp TTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTT-----------------------------------TTTTCTTCCE
T ss_pred CCCcCCccCHHHhccCCCCCEEECCCCccCccCHH-----------------------------------HhccCccCCE
Confidence 55543333333344455555555544433321100 1222333344
Q ss_pred eEEEEecCCCCCCCCCccchHHHHhhCCCCCCCCeEEEeeecCCCCCCCchhccCCCCEEEEecCCCCCcCCCCCCCCcc
Q 002308 727 LRLEFDKKGGGGGRRKNEDDQLLLEALQPPLNLKELEIHYYGGNTVFPSWMASLTNLKSLDLCFCENCEQLPPLGKLPSL 806 (938)
Q Consensus 727 L~L~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~l~~l~~l~~L 806 (938)
|++++|.+... .+..+..+++|+.|++++|.+.+..|..+..+++|+.|+|++|.+. +.+|+|
T Consensus 162 L~l~~n~l~~~-----------~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~------~~~~~l 224 (272)
T 3rfs_A 162 LDLSYNQLQSL-----------PEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWD------CTCPGI 224 (272)
T ss_dssp EECCSSCCCCC-----------CTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBC------CCTTTT
T ss_pred EECCCCCcCcc-----------CHHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCcc------ccCcHH
Confidence 44444433320 1123455678888888888888755556788999999999998654 456788
Q ss_pred ceeecccccCceEeCcc
Q 002308 807 EQLFISYMSSVKRVGDE 823 (938)
Q Consensus 807 ~~L~L~~~~~l~~~~~~ 823 (938)
+.|++..|.....+|..
T Consensus 225 ~~l~~~~n~~~g~ip~~ 241 (272)
T 3rfs_A 225 RYLSEWINKHSGVVRNS 241 (272)
T ss_dssp HHHHHHHHHTGGGBBCT
T ss_pred HHHHHHHHhCCCcccCc
Confidence 88888888755555544
No 81
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.69 E-value=2.2e-17 Score=173.61 Aligned_cols=196 Identities=14% Similarity=0.080 Sum_probs=150.4
Q ss_pred EeeCCcccccCCCCcccccceEEEEccCCCcCcc-cccccCceeEEeccCCCCCCCCchhhHHHHHhccCCCeeEEecCC
Q 002308 499 LEVNGSEELNVPNSLDEKVRHLMLIMGKESTFPI-STCRAKRIRSLLIEWPEFGHSSLNGEILEELFRESTSLRALDFPS 577 (938)
Q Consensus 499 ~~~~~~~~~~~~~~~~~~~r~l~l~~~~~~~~~~-~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~ 577 (938)
..+.+.....+|...+..++++++++|.+...+. .+..+++|+.|++++|.+. .+++..|..+++|++|+|++
T Consensus 12 ~~c~~~~l~~ip~~l~~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~------~~~~~~~~~l~~L~~L~L~~ 85 (276)
T 2z62_A 12 YQCMELNFYKIPDNLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQ------TIEDGAYQSLSHLSTLILTG 85 (276)
T ss_dssp EECTTSCCSSCCSSSCTTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCC------EECTTTTTTCTTCCEEECTT
T ss_pred EEecCCCccccCCCCCCCccEEECCCCcccccCHhHhccccCCcEEECCCCcCC------ccCHHHccCCcCCCEEECCC
Confidence 3444444555677777899999999999987654 7889999999999998762 33444588999999999999
Q ss_pred CCCCcccCccccccCCCCeeeecCCccccccc-cccCCCCccEEEcCCCCCcc-cccccccccCccceeecCCCcccccC
Q 002308 578 FYLPLEIPRNIEKLVHLRYLNLSDQKIKKLPE-TLCELYNLEKLDISGCSDLR-ELPKGIGKLINMKHLLNSGTRSLRYM 655 (938)
Q Consensus 578 n~~~~~lp~~~~~l~~L~~L~L~~~~i~~lp~-~i~~l~~L~~L~l~~~~~l~-~lp~~i~~l~~L~~L~l~~~~~~~~~ 655 (938)
|.+....+..+.++++|++|++++|.+..++. .+.++++|++|++++|.... .+|..+..+++|++|++++|......
T Consensus 86 n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~ 165 (276)
T 2z62_A 86 NPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIY 165 (276)
T ss_dssp CCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEEC
T ss_pred CccCccChhhhcCCccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCC
Confidence 99666666889999999999999999998776 69999999999999998544 37899999999999999999776655
Q ss_pred CccCCCCCCCc----ccCeeEecCCCCCCCCcccccccccccccCcceeecCcC
Q 002308 656 PVGIGRLTGLR----TLGEFHVSAGGGVDGSKACRLESLKNLEHLQVCCIRRLG 705 (938)
Q Consensus 656 p~~l~~l~~L~----~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~ 705 (938)
+..+..+.+|+ .|++++|.+....+ ......+|+.|++.+|.+..
T Consensus 166 ~~~~~~l~~L~~l~l~L~ls~n~l~~~~~-----~~~~~~~L~~L~L~~n~l~~ 214 (276)
T 2z62_A 166 CTDLRVLHQMPLLNLSLDLSLNPMNFIQP-----GAFKEIRLKELALDTNQLKS 214 (276)
T ss_dssp GGGGHHHHTCTTCCEEEECCSSCCCEECT-----TSSCSCCEEEEECCSSCCSC
T ss_pred HHHhhhhhhccccceeeecCCCcccccCc-----cccCCCcccEEECCCCceee
Confidence 66677667776 56666666543211 12222356666666665543
No 82
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.69 E-value=2e-16 Score=166.79 Aligned_cols=199 Identities=18% Similarity=0.121 Sum_probs=143.7
Q ss_pred hccCCCeeEEecCCCCCCcccCccccccCCCCeeeecCCcccccc-ccccCCCCccEEEcCCCCCcccccccccccCccc
Q 002308 564 FRESTSLRALDFPSFYLPLEIPRNIEKLVHLRYLNLSDQKIKKLP-ETLCELYNLEKLDISGCSDLRELPKGIGKLINMK 642 (938)
Q Consensus 564 ~~~~~~Lr~L~L~~n~~~~~lp~~~~~l~~L~~L~L~~~~i~~lp-~~i~~l~~L~~L~l~~~~~l~~lp~~i~~l~~L~ 642 (938)
+.++++|+.++++++. ...+|..+. .+|++|+|++|.++.++ ..+..+++|++|++++|. +..+|.. ..+++|+
T Consensus 6 ~~~l~~l~~l~~~~~~-l~~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~-~~l~~L~ 80 (290)
T 1p9a_G 6 VSKVASHLEVNCDKRN-LTALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAE-LTKLQVD-GTLPVLG 80 (290)
T ss_dssp EECSTTCCEEECTTSC-CSSCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSC-CCEEECC-SCCTTCC
T ss_pred ccccCCccEEECCCCC-CCcCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCc-cCcccCC-CCCCcCC
Confidence 4677889999999998 566777664 68999999999998664 578999999999999998 6666654 7889999
Q ss_pred eeecCCCcccccCCccCCCCCCCcccCeeEecCCCCCCCCcccccccccccccCcceeecCcCCCCChhhhhhhhccCCC
Q 002308 643 HLLNSGTRSLRYMPVGIGRLTGLRTLGEFHVSAGGGVDGSKACRLESLKNLEHLQVCCIRRLGDVSDVGEAKLLELDKKK 722 (938)
Q Consensus 643 ~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~~~ 722 (938)
+|++++|.+ ..+|..+..+++|+.|++++|.+....+. .+..+++|+.|++.+|
T Consensus 81 ~L~Ls~N~l-~~l~~~~~~l~~L~~L~l~~N~l~~l~~~----~~~~l~~L~~L~L~~N--------------------- 134 (290)
T 1p9a_G 81 TLDLSHNQL-QSLPLLGQTLPALTVLDVSFNRLTSLPLG----ALRGLGELQELYLKGN--------------------- 134 (290)
T ss_dssp EEECCSSCC-SSCCCCTTTCTTCCEEECCSSCCCCCCSS----TTTTCTTCCEEECTTS---------------------
T ss_pred EEECCCCcC-CcCchhhccCCCCCEEECCCCcCcccCHH----HHcCCCCCCEEECCCC---------------------
Confidence 999999844 47777788888888888887776542211 2444455555554444
Q ss_pred cCCceEEEEecCCCCCCCCCccchHHHHhhCCCCCCCCeEEEeeecCCCCCCC-chhccCCCCEEEEecCCCCCcCCCCC
Q 002308 723 YLSRLRLEFDKKGGGGGRRKNEDDQLLLEALQPPLNLKELEIHYYGGNTVFPS-WMASLTNLKSLDLCFCENCEQLPPLG 801 (938)
Q Consensus 723 ~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~p~-~~~~l~~L~~L~L~~~~~~~~l~~l~ 801 (938)
.+... .+..+..+++|+.|++++|.+.. +|. .+..+++|+.|+|++|.+....+.+.
T Consensus 135 ----------~l~~~-----------~~~~~~~l~~L~~L~L~~N~l~~-l~~~~~~~l~~L~~L~L~~N~l~~ip~~~~ 192 (290)
T 1p9a_G 135 ----------ELKTL-----------PPGLLTPTPKLEKLSLANNNLTE-LPAGLLNGLENLDTLLLQENSLYTIPKGFF 192 (290)
T ss_dssp ----------CCCCC-----------CTTTTTTCTTCCEEECTTSCCSC-CCTTTTTTCTTCCEEECCSSCCCCCCTTTT
T ss_pred ----------CCCcc-----------ChhhcccccCCCEEECCCCcCCc-cCHHHhcCcCCCCEEECCCCcCCccChhhc
Confidence 43320 11234556778888888888777 444 45678888888888887664433477
Q ss_pred CCCccceeeccccc
Q 002308 802 KLPSLEQLFISYMS 815 (938)
Q Consensus 802 ~l~~L~~L~L~~~~ 815 (938)
.+++|+.|+|++|+
T Consensus 193 ~~~~L~~l~L~~Np 206 (290)
T 1p9a_G 193 GSHLLPFAFLHGNP 206 (290)
T ss_dssp TTCCCSEEECCSCC
T ss_pred ccccCCeEEeCCCC
Confidence 77788888888876
No 83
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.68 E-value=4.2e-17 Score=174.55 Aligned_cols=229 Identities=14% Similarity=0.096 Sum_probs=154.5
Q ss_pred cCceeEEeccCCCCCCCCchhhHHHHHhccCCCeeEEecCCCCCCcccCccc--cccCCCCeeeecCCcccc-cc----c
Q 002308 537 AKRIRSLLIEWPEFGHSSLNGEILEELFRESTSLRALDFPSFYLPLEIPRNI--EKLVHLRYLNLSDQKIKK-LP----E 609 (938)
Q Consensus 537 ~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~n~~~~~lp~~~--~~l~~L~~L~L~~~~i~~-lp----~ 609 (938)
...++.+.+..+.+....+. .+. . +..+++|++|+|++|.+.+..|..+ +.+++|++|+|++|.++. .| .
T Consensus 63 ~~~l~~l~l~~~~~~~~~~~-~~~-~-~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~ 139 (310)
T 4glp_A 63 ALRVRRLTVGAAQVPAQLLV-GAL-R-VLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAEL 139 (310)
T ss_dssp SCCCCEEEECSCCCBHHHHH-HHH-H-HHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHH
T ss_pred hcceeEEEEeCCcCCHHHHH-HHH-H-hcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHH
Confidence 34466676666654322211 111 1 2234679999999999777888887 899999999999999884 22 3
Q ss_pred cccCCCCccEEEcCCCCCcccccccccccCccceeecCCCccccc--C--CccCCCCCCCcccCeeEecCCCCCCCCccc
Q 002308 610 TLCELYNLEKLDISGCSDLRELPKGIGKLINMKHLLNSGTRSLRY--M--PVGIGRLTGLRTLGEFHVSAGGGVDGSKAC 685 (938)
Q Consensus 610 ~i~~l~~L~~L~l~~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~--~--p~~l~~l~~L~~L~l~~~~~~~~~~~~~~~ 685 (938)
.+..+++|++|++++|......|..+..+++|++|++++|..... + +..++.+++|++|++++|.+... ..
T Consensus 140 ~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l-----~~ 214 (310)
T 4glp_A 140 QQWLKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETP-----TG 214 (310)
T ss_dssp HTTBCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCH-----HH
T ss_pred HhhhccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCch-----HH
Confidence 456799999999999996566667888999999999999965432 2 22235667777777766655320 00
Q ss_pred ccccccccccCcceeecCcCCCCChhhhhhhhccCCCcCCceEEEEecCCCCCCCCCccchHHHHhhC---CCCCCCCeE
Q 002308 686 RLESLKNLEHLQVCCIRRLGDVSDVGEAKLLELDKKKYLSRLRLEFDKKGGGGGRRKNEDDQLLLEAL---QPPLNLKEL 762 (938)
Q Consensus 686 ~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l---~~~~~L~~L 762 (938)
.....+..+++|+.|+|++|.+.+. .+..+ ..+++|++|
T Consensus 215 ---------------------------~~~~l~~~l~~L~~L~Ls~N~l~~~-----------~p~~~~~~~~~~~L~~L 256 (310)
T 4glp_A 215 ---------------------------VCAALAAAGVQPHSLDLSHNSLRAT-----------VNPSAPRCMWSSALNSL 256 (310)
T ss_dssp ---------------------------HHHHHHHHTCCCSSEECTTSCCCCC-----------CCSCCSSCCCCTTCCCE
T ss_pred ---------------------------HHHHHHhcCCCCCEEECCCCCCCcc-----------chhhHHhccCcCcCCEE
Confidence 0000123344555555555555431 01122 223688899
Q ss_pred EEeeecCCCCCCCchhccCCCCEEEEecCCCCCcCCCCCCCCccceeeccccc
Q 002308 763 EIHYYGGNTVFPSWMASLTNLKSLDLCFCENCEQLPPLGKLPSLEQLFISYMS 815 (938)
Q Consensus 763 ~l~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~l~~l~~l~~L~~L~L~~~~ 815 (938)
++++|.+.. +|..+. ++|+.|+|++|.+.. +|.+..+++|+.|+|++|+
T Consensus 257 ~Ls~N~l~~-lp~~~~--~~L~~L~Ls~N~l~~-~~~~~~l~~L~~L~L~~N~ 305 (310)
T 4glp_A 257 NLSFAGLEQ-VPKGLP--AKLRVLDLSSNRLNR-APQPDELPEVDNLTLDGNP 305 (310)
T ss_dssp ECCSSCCCS-CCSCCC--SCCSCEECCSCCCCS-CCCTTSCCCCSCEECSSTT
T ss_pred ECCCCCCCc-hhhhhc--CCCCEEECCCCcCCC-CchhhhCCCccEEECcCCC
Confidence 999998886 787764 799999999997664 3557888999999999987
No 84
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.68 E-value=9.6e-18 Score=175.69 Aligned_cols=210 Identities=15% Similarity=0.143 Sum_probs=135.3
Q ss_pred cccccCceeEEeccCCCCCCCCchhhHHHHHhccCCCeeEEecCCCCCCcccCccccccCCCCeeeecCCcccccccc-c
Q 002308 533 STCRAKRIRSLLIEWPEFGHSSLNGEILEELFRESTSLRALDFPSFYLPLEIPRNIEKLVHLRYLNLSDQKIKKLPET-L 611 (938)
Q Consensus 533 ~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~n~~~~~lp~~~~~l~~L~~L~L~~~~i~~lp~~-i 611 (938)
....+++|+.|.+.++.+..- + .+..+++|++|+|++|.+. .+ ..++.+++|++|+|++|.++.+|.. +
T Consensus 36 ~~~~l~~L~~L~l~~~~i~~~-------~-~l~~l~~L~~L~l~~n~l~-~~-~~l~~l~~L~~L~L~~n~l~~~~~~~~ 105 (272)
T 3rfs_A 36 TQNELNSIDQIIANNSDIKSV-------Q-GIQYLPNVRYLALGGNKLH-DI-SALKELTNLTYLILTGNQLQSLPNGVF 105 (272)
T ss_dssp CHHHHTTCCEEECTTSCCCCC-------T-TGGGCTTCCEEECTTSCCC-CC-GGGTTCTTCCEEECTTSCCCCCCTTTT
T ss_pred ccccccceeeeeeCCCCcccc-------c-ccccCCCCcEEECCCCCCC-Cc-hhhcCCCCCCEEECCCCccCccChhHh
Confidence 345677888888887765321 1 1567888888888888844 34 3678888888888888888876654 6
Q ss_pred cCCCCccEEEcCCCCCcccccccccccCccceeecCCCcccccCCccCCCCCCCcccCeeEecCCCCCCCCccccccccc
Q 002308 612 CELYNLEKLDISGCSDLRELPKGIGKLINMKHLLNSGTRSLRYMPVGIGRLTGLRTLGEFHVSAGGGVDGSKACRLESLK 691 (938)
Q Consensus 612 ~~l~~L~~L~l~~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~l~ 691 (938)
.++++|++|++++|......|..+..+++|++|++++|......+..++.+++|+.|++++|.+....+. .+..++
T Consensus 106 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~----~~~~l~ 181 (272)
T 3rfs_A 106 DKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEG----VFDKLT 181 (272)
T ss_dssp TTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTT----TTTTCT
T ss_pred cCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHH----HhcCCc
Confidence 7888888888888884444444477888888888888865544444467888888888887766542111 134455
Q ss_pred ccccCcceeecCcCCCCChhhhhhhhccCCCcCCceEEEEecCCCCCCCCCccchHHHHhhCCCCCCCCeEEEeeecCCC
Q 002308 692 NLEHLQVCCIRRLGDVSDVGEAKLLELDKKKYLSRLRLEFDKKGGGGGRRKNEDDQLLLEALQPPLNLKELEIHYYGGNT 771 (938)
Q Consensus 692 ~L~~L~l~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~ 771 (938)
+|+.|++.+|.+....+ ..+..+++|+.|++++|.+..
T Consensus 182 ~L~~L~L~~N~l~~~~~------------------------------------------~~~~~l~~L~~L~l~~N~~~~ 219 (272)
T 3rfs_A 182 QLKDLRLYQNQLKSVPD------------------------------------------GVFDRLTSLQYIWLHDNPWDC 219 (272)
T ss_dssp TCCEEECCSSCCSCCCT------------------------------------------TTTTTCTTCCEEECCSSCBCC
T ss_pred cCCEEECCCCcCCccCH------------------------------------------HHHhCCcCCCEEEccCCCccc
Confidence 55555555544332221 234445666666666665443
Q ss_pred CCCCchhccCCCCEEEEecCCCCCcCCC-CCCCCc
Q 002308 772 VFPSWMASLTNLKSLDLCFCENCEQLPP-LGKLPS 805 (938)
Q Consensus 772 ~~p~~~~~l~~L~~L~L~~~~~~~~l~~-l~~l~~ 805 (938)
.+++|+.|+++.|.+.+.+|. ++.++.
T Consensus 220 -------~~~~l~~l~~~~n~~~g~ip~~~~~~~~ 247 (272)
T 3rfs_A 220 -------TCPGIRYLSEWINKHSGVVRNSAGSVAP 247 (272)
T ss_dssp -------CTTTTHHHHHHHHHTGGGBBCTTSCBCG
T ss_pred -------cCcHHHHHHHHHHhCCCcccCcccccCC
Confidence 344666677776666666654 554443
No 85
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.67 E-value=5.3e-18 Score=184.32 Aligned_cols=120 Identities=19% Similarity=0.236 Sum_probs=64.7
Q ss_pred HhhCCCCC-CCCeEEEeeec--CC-CCCCCchhccCCCCEEEEecCC-CCCc-CCCCCCCCccceeecccccCceEeCcc
Q 002308 750 LEALQPPL-NLKELEIHYYG--GN-TVFPSWMASLTNLKSLDLCFCE-NCEQ-LPPLGKLPSLEQLFISYMSSVKRVGDE 823 (938)
Q Consensus 750 ~~~l~~~~-~L~~L~l~~~~--~~-~~~p~~~~~l~~L~~L~L~~~~-~~~~-l~~l~~l~~L~~L~L~~~~~l~~~~~~ 823 (938)
+..+..++ +|++|++++|. ++ ..+|..+..+++|+.|+|++|. +.+. ++.++.+++|+.|++++|..+. +..
T Consensus 187 ~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~--~~~ 264 (336)
T 2ast_B 187 QVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDII--PET 264 (336)
T ss_dssp HHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCC--GGG
T ss_pred HHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCC--HHH
Confidence 33444455 67777777663 32 1245556677777777777776 3322 3336777777777777775221 111
Q ss_pred cccCCCCCCCCCCCCcccccCCccceeeccccccccccccccccccccccccc-cccceecccccccccCCCCCC
Q 002308 824 FLGVESDRHDSSSSSSVIIAFPKLKSLSIFEMEELEEWDYGITRTGNTFINIM-PRLSSLTINYCSKLKALPDHI 897 (938)
Q Consensus 824 ~~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~~~~~~~~~~~~~~~~l-~~L~~L~l~~c~~l~~lp~~l 897 (938)
+.. ...+++|+.|++.+| +..-. +..+ .+|..|++++|..-...|..+
T Consensus 265 ~~~--------------l~~~~~L~~L~l~~~--i~~~~----------~~~l~~~l~~L~l~~n~l~~~~~~~~ 313 (336)
T 2ast_B 265 LLE--------------LGEIPTLKTLQVFGI--VPDGT----------LQLLKEALPHLQINCSHFTTIARPTI 313 (336)
T ss_dssp GGG--------------GGGCTTCCEEECTTS--SCTTC----------HHHHHHHSTTSEESCCCSCCTTCSSC
T ss_pred HHH--------------HhcCCCCCEEeccCc--cCHHH----------HHHHHhhCcceEEecccCccccCCcc
Confidence 100 124677777777766 11110 1122 346677777654444455443
No 86
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.66 E-value=1.9e-16 Score=172.39 Aligned_cols=238 Identities=16% Similarity=0.116 Sum_probs=140.7
Q ss_pred eEEecCCCCCCcccCccccccCCCCeeeecCCccccccc-cccCCCCccEEEcCCCCCcccccc-cccccCccceee-cC
Q 002308 571 RALDFPSFYLPLEIPRNIEKLVHLRYLNLSDQKIKKLPE-TLCELYNLEKLDISGCSDLRELPK-GIGKLINMKHLL-NS 647 (938)
Q Consensus 571 r~L~L~~n~~~~~lp~~~~~l~~L~~L~L~~~~i~~lp~-~i~~l~~L~~L~l~~~~~l~~lp~-~i~~l~~L~~L~-l~ 647 (938)
++++.+++. .+.+|..+. .++++|+|++|.|+.+|. .|.++++|++|+|++|...+.+|. .|.++++|+++. +.
T Consensus 12 ~~v~C~~~~-Lt~iP~~l~--~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~ 88 (350)
T 4ay9_X 12 RVFLCQESK-VTEIPSDLP--RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEK 88 (350)
T ss_dssp TEEEEESTT-CCSCCTTCC--TTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEE
T ss_pred CEEEecCCC-CCccCcCcC--CCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhccc
Confidence 456667776 556776653 578889999988888886 578889999999998886666664 467788877644 44
Q ss_pred CCcccccCCccCCCCCCCcccCeeEecCCCCCCCCcccccccccccccCcceeecCcCCCCChhhhhhhhccCCCcCCce
Q 002308 648 GTRSLRYMPVGIGRLTGLRTLGEFHVSAGGGVDGSKACRLESLKNLEHLQVCCIRRLGDVSDVGEAKLLELDKKKYLSRL 727 (938)
Q Consensus 648 ~~~~~~~~p~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~~~~L~~L 727 (938)
+|.+....|..+..+++|+.|++++|.+....+.. +....++..|++.++.....++.
T Consensus 89 ~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~----~~~~~~l~~l~l~~~~~i~~l~~------------------ 146 (350)
T 4ay9_X 89 ANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVH----KIHSLQKVLLDIQDNINIHTIER------------------ 146 (350)
T ss_dssp ETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCT----TCCBSSCEEEEEESCTTCCEECT------------------
T ss_pred CCcccccCchhhhhccccccccccccccccCCchh----hcccchhhhhhhccccccccccc------------------
Confidence 45444444566788888888888888776522211 22222333333322211111110
Q ss_pred EEEEecCCCCCCCCCccchHHHHhhCCCC-CCCCeEEEeeecCCCCCCCchhccCCCCEEEEecCCCCCcCCC--CCCCC
Q 002308 728 RLEFDKKGGGGGRRKNEDDQLLLEALQPP-LNLKELEIHYYGGNTVFPSWMASLTNLKSLDLCFCENCEQLPP--LGKLP 804 (938)
Q Consensus 728 ~L~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~l~~--l~~l~ 804 (938)
..+... ..++.|++++|.+.. +|.......+|+.|++++|...+.+|. ++.++
T Consensus 147 -----------------------~~f~~~~~~l~~L~L~~N~i~~-i~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~ 202 (350)
T 4ay9_X 147 -----------------------NSFVGLSFESVILWLNKNGIQE-IHNSAFNGTQLDELNLSDNNNLEELPNDVFHGAS 202 (350)
T ss_dssp -----------------------TSSTTSBSSCEEEECCSSCCCE-ECTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEE
T ss_pred -----------------------cchhhcchhhhhhccccccccC-CChhhccccchhHHhhccCCcccCCCHHHhccCc
Confidence 111122 245666666666665 555444555667777765444555543 66677
Q ss_pred ccceeecccccCceEeCcccccCCCCCCCCCCCCcccccCCccceeeccccccccccccccccccccccccccccceecc
Q 002308 805 SLEQLFISYMSSVKRVGDEFLGVESDRHDSSSSSSVIIAFPKLKSLSIFEMEELEEWDYGITRTGNTFINIMPRLSSLTI 884 (938)
Q Consensus 805 ~L~~L~L~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~~~~~~~~~~~~~~~~l~~L~~L~l 884 (938)
+|+.|+|++|. ++.+|.. .|.+|+.|.+.++.+++.++. +..+++|+.+++
T Consensus 203 ~L~~LdLs~N~-l~~lp~~-------------------~~~~L~~L~~l~~~~l~~lP~---------l~~l~~L~~l~l 253 (350)
T 4ay9_X 203 GPVILDISRTR-IHSLPSY-------------------GLENLKKLRARSTYNLKKLPT---------LEKLVALMEASL 253 (350)
T ss_dssp CCSEEECTTSC-CCCCCSS-------------------SCTTCCEEECTTCTTCCCCCC---------TTTCCSCCEEEC
T ss_pred ccchhhcCCCC-cCccChh-------------------hhccchHhhhccCCCcCcCCC---------chhCcChhhCcC
Confidence 77777777665 5555432 345555555555555555542 124666666666
Q ss_pred cc
Q 002308 885 NY 886 (938)
Q Consensus 885 ~~ 886 (938)
.+
T Consensus 254 ~~ 255 (350)
T 4ay9_X 254 TY 255 (350)
T ss_dssp SC
T ss_pred CC
Confidence 54
No 87
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.66 E-value=2.6e-16 Score=164.58 Aligned_cols=176 Identities=18% Similarity=0.155 Sum_probs=94.5
Q ss_pred cceEEEEccCCCcCcccccccCceeEEeccCCCCCCCCchhhHHHHHhccCCCeeEEecCCCCCCcccCccccccCCCCe
Q 002308 517 VRHLMLIMGKESTFPISTCRAKRIRSLLIEWPEFGHSSLNGEILEELFRESTSLRALDFPSFYLPLEIPRNIEKLVHLRY 596 (938)
Q Consensus 517 ~r~l~l~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~n~~~~~lp~~~~~l~~L~~ 596 (938)
.+.++++++.++.+|..+. ++++.|.+++|.+. .+++..|..+++|++|+|++|.+....+..|..+++|++
T Consensus 18 ~~~l~~~~~~l~~ip~~~~--~~l~~L~l~~n~l~------~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~ 89 (270)
T 2o6q_A 18 KNSVDCSSKKLTAIPSNIP--ADTKKLDLQSNKLS------SLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLET 89 (270)
T ss_dssp TTEEECTTSCCSSCCSCCC--TTCSEEECCSSCCS------CCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCE
T ss_pred CCEEEccCCCCCccCCCCC--CCCCEEECcCCCCC------eeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCE
Confidence 4556666666655554332 45666666666542 222333556666666666666633222233456666666
Q ss_pred eeecCCccccccc-cccCCCCccEEEcCCCCCcccccccccccCccceeecCCCcccccCCccCCCCCCCcccCeeEecC
Q 002308 597 LNLSDQKIKKLPE-TLCELYNLEKLDISGCSDLRELPKGIGKLINMKHLLNSGTRSLRYMPVGIGRLTGLRTLGEFHVSA 675 (938)
Q Consensus 597 L~L~~~~i~~lp~-~i~~l~~L~~L~l~~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~~ 675 (938)
|+|++|.++.+|. .+..+++|++|++++|......|..+..+++|++|++++|.+....+..++.+++|+.|++++|.+
T Consensus 90 L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l 169 (270)
T 2o6q_A 90 LWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQL 169 (270)
T ss_dssp EECCSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred EECCCCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcC
Confidence 6666666665554 345666666666666663333334456666666666666643332223355666666666665555
Q ss_pred CCCCCCCcccccccccccccCcceeecCc
Q 002308 676 GGGVDGSKACRLESLKNLEHLQVCCIRRL 704 (938)
Q Consensus 676 ~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 704 (938)
....+. .+..+++|+.|++.+|.+.
T Consensus 170 ~~~~~~----~~~~l~~L~~L~L~~N~l~ 194 (270)
T 2o6q_A 170 KRVPEG----AFDKLTELKTLKLDNNQLK 194 (270)
T ss_dssp SCCCTT----TTTTCTTCCEEECCSSCCS
T ss_pred cEeChh----HhccCCCcCEEECCCCcCC
Confidence 432111 2444555555555555443
No 88
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.66 E-value=3.2e-18 Score=189.68 Aligned_cols=246 Identities=19% Similarity=0.148 Sum_probs=143.2
Q ss_pred CcccccccCceeEEeccCCCCCCCCchhhHHHHHhccCCCeeEEecCCCC---CCcccCccc-------cccCCCCeeee
Q 002308 530 FPISTCRAKRIRSLLIEWPEFGHSSLNGEILEELFRESTSLRALDFPSFY---LPLEIPRNI-------EKLVHLRYLNL 599 (938)
Q Consensus 530 ~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~n~---~~~~lp~~~-------~~l~~L~~L~L 599 (938)
+...+..+++|+.|.+++|.++... .......+..+++|++|+|++|. +.+.+|..+ ..+++|++|+|
T Consensus 24 l~~~l~~~~~L~~L~L~~n~i~~~~--~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~L 101 (386)
T 2ca6_A 24 VFAVLLEDDSVKEIVLSGNTIGTEA--ARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRL 101 (386)
T ss_dssp TSHHHHHCSCCCEEECTTSEECHHH--HHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEEC
T ss_pred HHHHHhcCCCccEEECCCCCCCHHH--HHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEEC
Confidence 4556667777888888777652110 11122336677888888888764 222344433 56778888888
Q ss_pred cCCcccc-----ccccccCCCCccEEEcCCCCCccc----cccccccc---------CccceeecCCCccc-ccCC---c
Q 002308 600 SDQKIKK-----LPETLCELYNLEKLDISGCSDLRE----LPKGIGKL---------INMKHLLNSGTRSL-RYMP---V 657 (938)
Q Consensus 600 ~~~~i~~-----lp~~i~~l~~L~~L~l~~~~~l~~----lp~~i~~l---------~~L~~L~l~~~~~~-~~~p---~ 657 (938)
++|.++. +|..+.++++|++|++++|..... ++..+..+ ++|++|++++|.+. ..+| .
T Consensus 102 s~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~ 181 (386)
T 2ca6_A 102 SDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAK 181 (386)
T ss_dssp CSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHH
T ss_pred CCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHH
Confidence 8887764 667777788888888888774322 33333344 67777777777543 2222 2
Q ss_pred cCCCCCCCcccCeeEecCCCCCCCCcccccccccccccCcceeecCcCCCCChhhhhhh-hccCCCcCCceEEEEecCCC
Q 002308 658 GIGRLTGLRTLGEFHVSAGGGVDGSKACRLESLKNLEHLQVCCIRRLGDVSDVGEAKLL-ELDKKKYLSRLRLEFDKKGG 736 (938)
Q Consensus 658 ~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~-~l~~~~~L~~L~L~~~~~~~ 736 (938)
.+..+++|++|++++|.+... ....... .+..+++|+.|+|++|.++.
T Consensus 182 ~l~~~~~L~~L~L~~n~l~~~-------------------------------g~~~l~~~~l~~~~~L~~L~Ls~n~l~~ 230 (386)
T 2ca6_A 182 TFQSHRLLHTVKMVQNGIRPE-------------------------------GIEHLLLEGLAYCQELKVLDLQDNTFTH 230 (386)
T ss_dssp HHHHCTTCCEEECCSSCCCHH-------------------------------HHHHHHHTTGGGCTTCCEEECCSSCCHH
T ss_pred HHHhCCCcCEEECcCCCCCHh-------------------------------HHHHHHHHHhhcCCCccEEECcCCCCCc
Confidence 344455555555554443210 0000111 34555666666666665531
Q ss_pred CCCCCCccchHHHHhhCCCCCCCCeEEEeeecCCCC----CCCchhc--cCCCCEEEEecCCCCC----cCCC-C-CCCC
Q 002308 737 GGGRRKNEDDQLLLEALQPPLNLKELEIHYYGGNTV----FPSWMAS--LTNLKSLDLCFCENCE----QLPP-L-GKLP 804 (938)
Q Consensus 737 ~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~----~p~~~~~--l~~L~~L~L~~~~~~~----~l~~-l-~~l~ 804 (938)
.....++..+..+++|+.|+|++|.+... +|.++.. +++|+.|+|++|.+.. .+|. + .+++
T Consensus 231 -------~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~ 303 (386)
T 2ca6_A 231 -------LGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMP 303 (386)
T ss_dssp -------HHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCT
T ss_pred -------HHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCC
Confidence 11133555666677777777777776653 3444432 6777777777776655 2443 3 5567
Q ss_pred ccceeeccccc
Q 002308 805 SLEQLFISYMS 815 (938)
Q Consensus 805 ~L~~L~L~~~~ 815 (938)
+|+.|++++|+
T Consensus 304 ~L~~L~l~~N~ 314 (386)
T 2ca6_A 304 DLLFLELNGNR 314 (386)
T ss_dssp TCCEEECTTSB
T ss_pred CceEEEccCCc
Confidence 77777777776
No 89
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.65 E-value=1.2e-18 Score=193.12 Aligned_cols=245 Identities=16% Similarity=0.107 Sum_probs=170.4
Q ss_pred HhccCCCeeEEecCCCCCCcc----cCccccccCCCCeeeecCCccc----cccccc-------cCCCCccEEEcCCCCC
Q 002308 563 LFRESTSLRALDFPSFYLPLE----IPRNIEKLVHLRYLNLSDQKIK----KLPETL-------CELYNLEKLDISGCSD 627 (938)
Q Consensus 563 ~~~~~~~Lr~L~L~~n~~~~~----lp~~~~~l~~L~~L~L~~~~i~----~lp~~i-------~~l~~L~~L~l~~~~~ 627 (938)
.+..+++|++|+|++|.+... ++..+..+++|++|+|++|.+. .+|..+ ..+++|++|++++|..
T Consensus 27 ~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l 106 (386)
T 2ca6_A 27 VLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAF 106 (386)
T ss_dssp HHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCC
T ss_pred HHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcC
Confidence 467789999999999985544 3445778899999999997654 334444 6889999999999985
Q ss_pred cc----cccccccccCccceeecCCCcccccCCccCCCCCCCcccCeeEecCCCCCCCCcccccccc---------cccc
Q 002308 628 LR----ELPKGIGKLINMKHLLNSGTRSLRYMPVGIGRLTGLRTLGEFHVSAGGGVDGSKACRLESL---------KNLE 694 (938)
Q Consensus 628 l~----~lp~~i~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~l---------~~L~ 694 (938)
.. .+|..+..+++|++|++++|.+....+..+... +..+ ++|+
T Consensus 107 ~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~------------------------l~~l~~~~~~~~~~~L~ 162 (386)
T 2ca6_A 107 GPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARA------------------------LQELAVNKKAKNAPPLR 162 (386)
T ss_dssp CTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHH------------------------HHHHHHHHHHHTCCCCC
T ss_pred CHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHH------------------------HHHHhhhhhcccCCCCc
Confidence 54 377788889999999999886543222222111 1111 4555
Q ss_pred cCcceeecCcCCCCChhhhhhhhccCCCcCCceEEEEecCCCCCCCCCccchHHHHh-hCCCCCCCCeEEEeeecCC---
Q 002308 695 HLQVCCIRRLGDVSDVGEAKLLELDKKKYLSRLRLEFDKKGGGGGRRKNEDDQLLLE-ALQPPLNLKELEIHYYGGN--- 770 (938)
Q Consensus 695 ~L~l~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~-~l~~~~~L~~L~l~~~~~~--- 770 (938)
.|++.+|.+... ........+..+++|+.|++++|.+.. .....+.. .+..+++|+.|+|++|.++
T Consensus 163 ~L~L~~n~l~~~---~~~~l~~~l~~~~~L~~L~L~~n~l~~-------~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g 232 (386)
T 2ca6_A 163 SIICGRNRLENG---SMKEWAKTFQSHRLLHTVKMVQNGIRP-------EGIEHLLLEGLAYCQELKVLDLQDNTFTHLG 232 (386)
T ss_dssp EEECCSSCCTGG---GHHHHHHHHHHCTTCCEEECCSSCCCH-------HHHHHHHHTTGGGCTTCCEEECCSSCCHHHH
T ss_pred EEECCCCCCCcH---HHHHHHHHHHhCCCcCEEECcCCCCCH-------hHHHHHHHHHhhcCCCccEEECcCCCCCcHH
Confidence 555555443210 011122346677899999999998763 11122334 7888999999999999984
Q ss_pred -CCCCCchhccCCCCEEEEecCCCCCc----CCC-C--CCCCccceeecccccCceE-----eCccccc-CCCCCCCCCC
Q 002308 771 -TVFPSWMASLTNLKSLDLCFCENCEQ----LPP-L--GKLPSLEQLFISYMSSVKR-----VGDEFLG-VESDRHDSSS 836 (938)
Q Consensus 771 -~~~p~~~~~l~~L~~L~L~~~~~~~~----l~~-l--~~l~~L~~L~L~~~~~l~~-----~~~~~~~-~~~l~~~~~~ 836 (938)
..+|..+..+++|+.|+|++|.+... ++. + +.+++|+.|+|++|. +.. ++..+.. .+.+..++++
T Consensus 233 ~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~-i~~~g~~~l~~~l~~~l~~L~~L~l~ 311 (386)
T 2ca6_A 233 SSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNE-IELDAVRTLKTVIDEKMPDLLFLELN 311 (386)
T ss_dssp HHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSC-CBHHHHHHHHHHHHHHCTTCCEEECT
T ss_pred HHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCc-CCHHHHHHHHHHHHhcCCCceEEEcc
Confidence 33778888999999999999987654 333 4 559999999999998 544 6666533 5788888888
Q ss_pred CCcccc
Q 002308 837 SSSVII 842 (938)
Q Consensus 837 ~~~~~~ 842 (938)
.|.+..
T Consensus 312 ~N~l~~ 317 (386)
T 2ca6_A 312 GNRFSE 317 (386)
T ss_dssp TSBSCT
T ss_pred CCcCCc
Confidence 887643
No 90
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.65 E-value=6.8e-17 Score=172.90 Aligned_cols=229 Identities=16% Similarity=0.091 Sum_probs=149.6
Q ss_pred CCeeEEecCCCCCCcc-cCc--cccccCCCCeeeecCCccc-cccccc--cCCCCccEEEcCCCCCccccc----ccccc
Q 002308 568 TSLRALDFPSFYLPLE-IPR--NIEKLVHLRYLNLSDQKIK-KLPETL--CELYNLEKLDISGCSDLRELP----KGIGK 637 (938)
Q Consensus 568 ~~Lr~L~L~~n~~~~~-lp~--~~~~l~~L~~L~L~~~~i~-~lp~~i--~~l~~L~~L~l~~~~~l~~lp----~~i~~ 637 (938)
..++.|.+.++.+... +.. .+..+.+|++|++++|.+. ..|..+ ..+++|++|++++|......| ..+..
T Consensus 64 ~~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~ 143 (310)
T 4glp_A 64 LRVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWL 143 (310)
T ss_dssp CCCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTB
T ss_pred cceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhh
Confidence 3567777777763321 111 1223466888888888876 555565 778888888888887544333 23456
Q ss_pred cCccceeecCCCcccccCCccCCCCCCCcccCeeEecCCCCCCCCcccccccccccccCcceeecCcCCCCChhhhhhhh
Q 002308 638 LINMKHLLNSGTRSLRYMPVGIGRLTGLRTLGEFHVSAGGGVDGSKACRLESLKNLEHLQVCCIRRLGDVSDVGEAKLLE 717 (938)
Q Consensus 638 l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~ 717 (938)
+++|++|++++|......|..++.+++|++|++++|.+.... .+ .....
T Consensus 144 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~---------~~----------------------~~~~~ 192 (310)
T 4glp_A 144 KPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGER---------GL----------------------MAALC 192 (310)
T ss_dssp CSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHH---------HH----------------------HTTSC
T ss_pred ccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccch---------hh----------------------hHHHh
Confidence 777888888777665555556667777777776666542200 00 00001
Q ss_pred ccCCCcCCceEEEEecCCCCCCCCCccchHHHHh-hCCCCCCCCeEEEeeecCCCCCCCchhcc---CCCCEEEEecCCC
Q 002308 718 LDKKKYLSRLRLEFDKKGGGGGRRKNEDDQLLLE-ALQPPLNLKELEIHYYGGNTVFPSWMASL---TNLKSLDLCFCEN 793 (938)
Q Consensus 718 l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~-~l~~~~~L~~L~l~~~~~~~~~p~~~~~l---~~L~~L~L~~~~~ 793 (938)
+..+++|++|+|++|.+.. ....+. .+..+++|++|++++|.+.+..|..+..+ ++|+.|+|++|.+
T Consensus 193 ~~~l~~L~~L~Ls~N~l~~---------l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l 263 (310)
T 4glp_A 193 PHKFPAIQNLALRNTGMET---------PTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGL 263 (310)
T ss_dssp TTSSCCCCSCBCCSSCCCC---------HHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCC
T ss_pred hhcCCCCCEEECCCCCCCc---------hHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCC
Confidence 2345567777777776653 122222 24567899999999999999658777766 7999999999987
Q ss_pred CCcCCC-CCCCCccceeecccccCceEeCcccccCCCCCCCCCCCCccc
Q 002308 794 CEQLPP-LGKLPSLEQLFISYMSSVKRVGDEFLGVESDRHDSSSSSSVI 841 (938)
Q Consensus 794 ~~~l~~-l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~ 841 (938)
. .+|. +. ++|+.|+|++|. ++.+|. +.....++.++++.|.+.
T Consensus 264 ~-~lp~~~~--~~L~~L~Ls~N~-l~~~~~-~~~l~~L~~L~L~~N~l~ 307 (310)
T 4glp_A 264 E-QVPKGLP--AKLRVLDLSSNR-LNRAPQ-PDELPEVDNLTLDGNPFL 307 (310)
T ss_dssp C-SCCSCCC--SCCSCEECCSCC-CCSCCC-TTSCCCCSCEECSSTTTS
T ss_pred C-chhhhhc--CCCCEEECCCCc-CCCCch-hhhCCCccEEECcCCCCC
Confidence 7 4554 53 899999999998 666554 455677788888877653
No 91
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.65 E-value=1.6e-16 Score=163.10 Aligned_cols=195 Identities=13% Similarity=0.070 Sum_probs=104.3
Q ss_pred CeeEEecCCCCCCcccCccccccCCCCeeeecCCc-cccccc-cccCCCCccEEEcCC-CCCccccc-ccccccCcccee
Q 002308 569 SLRALDFPSFYLPLEIPRNIEKLVHLRYLNLSDQK-IKKLPE-TLCELYNLEKLDISG-CSDLRELP-KGIGKLINMKHL 644 (938)
Q Consensus 569 ~Lr~L~L~~n~~~~~lp~~~~~l~~L~~L~L~~~~-i~~lp~-~i~~l~~L~~L~l~~-~~~l~~lp-~~i~~l~~L~~L 644 (938)
.|++|++++|.+....+..|+.+++|++|++++|. ++.+|. .+.++++|++|++++ |. +..+| ..+..+++|++|
T Consensus 32 ~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~-l~~i~~~~f~~l~~L~~L 110 (239)
T 2xwt_C 32 STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRN-LTYIDPDALKELPLLKFL 110 (239)
T ss_dssp TCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETT-CCEECTTSEECCTTCCEE
T ss_pred cccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCC-eeEcCHHHhCCCCCCCEE
Confidence 56666666666333233355566666666666664 555554 455666666666665 44 33333 345555666666
Q ss_pred ecCCCcccccCCccCCCCCCCc---ccCeeEe-cCCCCCCCCcccccccccccccCcceeecCcCCCCChhhhhhhhccC
Q 002308 645 LNSGTRSLRYMPVGIGRLTGLR---TLGEFHV-SAGGGVDGSKACRLESLKNLEHLQVCCIRRLGDVSDVGEAKLLELDK 720 (938)
Q Consensus 645 ~l~~~~~~~~~p~~l~~l~~L~---~L~l~~~-~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~ 720 (938)
++++|... .+|. ++.+++|+ .|++++| .+.. ..+. .+..
T Consensus 111 ~l~~n~l~-~lp~-~~~l~~L~~L~~L~l~~N~~l~~----------------------------i~~~-------~~~~ 153 (239)
T 2xwt_C 111 GIFNTGLK-MFPD-LTKVYSTDIFFILEITDNPYMTS----------------------------IPVN-------AFQG 153 (239)
T ss_dssp EEEEECCC-SCCC-CTTCCBCCSEEEEEEESCTTCCE----------------------------ECTT-------TTTT
T ss_pred eCCCCCCc-cccc-cccccccccccEEECCCCcchhh----------------------------cCcc-------cccc
Confidence 66555332 2443 44444444 4444444 2221 1111 2344
Q ss_pred CCcCC-ceEEEEecCCCCCCCCCccchHHHHhhCCCCCCCCeEEEeeec-CCCCCCCchhcc-CCCCEEEEecCCCCCcC
Q 002308 721 KKYLS-RLRLEFDKKGGGGGRRKNEDDQLLLEALQPPLNLKELEIHYYG-GNTVFPSWMASL-TNLKSLDLCFCENCEQL 797 (938)
Q Consensus 721 ~~~L~-~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~-~~~~~p~~~~~l-~~L~~L~L~~~~~~~~l 797 (938)
+++|+ .|++++|.+.. ++......++|+.|++++|. +....+..+..+ ++|+.|+|++|.+.. +
T Consensus 154 l~~L~~~L~l~~n~l~~------------i~~~~~~~~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~-l 220 (239)
T 2xwt_C 154 LCNETLTLKLYNNGFTS------------VQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTA-L 220 (239)
T ss_dssp TBSSEEEEECCSCCCCE------------ECTTTTTTCEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCCC-C
T ss_pred hhcceeEEEcCCCCCcc------------cCHhhcCCCCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCcccc-C
Confidence 45555 55555555432 11211122577778887774 666334556677 788888888876653 3
Q ss_pred CCCCCCCccceeeccccc
Q 002308 798 PPLGKLPSLEQLFISYMS 815 (938)
Q Consensus 798 ~~l~~l~~L~~L~L~~~~ 815 (938)
|.- .+++|+.|+++++.
T Consensus 221 ~~~-~~~~L~~L~l~~~~ 237 (239)
T 2xwt_C 221 PSK-GLEHLKELIARNTW 237 (239)
T ss_dssp CCT-TCTTCSEEECTTC-
T ss_pred Chh-HhccCceeeccCcc
Confidence 322 67778888887764
No 92
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.65 E-value=2.7e-16 Score=167.65 Aligned_cols=148 Identities=17% Similarity=0.200 Sum_probs=95.7
Q ss_pred cccCceeEEeccCCCCCCCCchhhHHHHHhccCCCeeEEecCCCCCCcccCccccccCCCCeeeecCCccccccccccCC
Q 002308 535 CRAKRIRSLLIEWPEFGHSSLNGEILEELFRESTSLRALDFPSFYLPLEIPRNIEKLVHLRYLNLSDQKIKKLPETLCEL 614 (938)
Q Consensus 535 ~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~n~~~~~lp~~~~~l~~L~~L~L~~~~i~~lp~~i~~l 614 (938)
..+++|+.|.+.++.+.. + + .+..+++|++|+|++|. ...++. ++.+++|++|+|++|.++.+| .+..+
T Consensus 38 ~~l~~L~~L~l~~~~i~~------l-~-~~~~l~~L~~L~L~~n~-i~~~~~-~~~l~~L~~L~L~~n~l~~~~-~~~~l 106 (308)
T 1h6u_A 38 ADLDGITTLSAFGTGVTT------I-E-GVQYLNNLIGLELKDNQ-ITDLAP-LKNLTKITELELSGNPLKNVS-AIAGL 106 (308)
T ss_dssp HHHHTCCEEECTTSCCCC------C-T-TGGGCTTCCEEECCSSC-CCCCGG-GTTCCSCCEEECCSCCCSCCG-GGTTC
T ss_pred HHcCCcCEEEeeCCCccC------c-h-hhhccCCCCEEEccCCc-CCCChh-HccCCCCCEEEccCCcCCCch-hhcCC
Confidence 456777777777766422 1 1 15667778888888777 444444 777778888888887777765 57777
Q ss_pred CCccEEEcCCCCCcccccccccccCccceeecCCCcccccCCccCCCCCCCcccCeeEecCCCCCCCCcccccccccccc
Q 002308 615 YNLEKLDISGCSDLRELPKGIGKLINMKHLLNSGTRSLRYMPVGIGRLTGLRTLGEFHVSAGGGVDGSKACRLESLKNLE 694 (938)
Q Consensus 615 ~~L~~L~l~~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~L~ 694 (938)
++|++|++++|. +..+|. +..+++|++|++++|... .++. ++.+++|+.|++++|.+.. ...+..+++|+
T Consensus 107 ~~L~~L~l~~n~-l~~~~~-l~~l~~L~~L~l~~n~l~-~~~~-l~~l~~L~~L~l~~n~l~~------~~~l~~l~~L~ 176 (308)
T 1h6u_A 107 QSIKTLDLTSTQ-ITDVTP-LAGLSNLQVLYLDLNQIT-NISP-LAGLTNLQYLSIGNAQVSD------LTPLANLSKLT 176 (308)
T ss_dssp TTCCEEECTTSC-CCCCGG-GTTCTTCCEEECCSSCCC-CCGG-GGGCTTCCEEECCSSCCCC------CGGGTTCTTCC
T ss_pred CCCCEEECCCCC-CCCchh-hcCCCCCCEEECCCCccC-cCcc-ccCCCCccEEEccCCcCCC------ChhhcCCCCCC
Confidence 788888888777 555554 777778888888777443 3333 6777777777777766544 11144455555
Q ss_pred cCcceeecC
Q 002308 695 HLQVCCIRR 703 (938)
Q Consensus 695 ~L~l~~~~~ 703 (938)
.|++.+|..
T Consensus 177 ~L~l~~n~l 185 (308)
T 1h6u_A 177 TLKADDNKI 185 (308)
T ss_dssp EEECCSSCC
T ss_pred EEECCCCcc
Confidence 555544443
No 93
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.64 E-value=1.2e-15 Score=156.60 Aligned_cols=127 Identities=19% Similarity=0.080 Sum_probs=72.6
Q ss_pred CCCCeEEEeeecCCCCCCCchhccCCCC---EEEEecC-CCCCcCCC-CCCCCccc-eeecccccCceEeCcccccCCCC
Q 002308 757 LNLKELEIHYYGGNTVFPSWMASLTNLK---SLDLCFC-ENCEQLPP-LGKLPSLE-QLFISYMSSVKRVGDEFLGVESD 830 (938)
Q Consensus 757 ~~L~~L~l~~~~~~~~~p~~~~~l~~L~---~L~L~~~-~~~~~l~~-l~~l~~L~-~L~L~~~~~l~~~~~~~~~~~~l 830 (938)
++|+.|++++|.+.+ +|. +..+++|+ .|++++| .+....+. ++.+++|+ .|++++|. ++.+|...+
T Consensus 105 ~~L~~L~l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~-l~~i~~~~~----- 176 (239)
T 2xwt_C 105 PLLKFLGIFNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNG-FTSVQGYAF----- 176 (239)
T ss_dssp TTCCEEEEEEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCC-CCEECTTTT-----
T ss_pred CCCCEEeCCCCCCcc-ccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCC-CcccCHhhc-----
Confidence 344445555554444 454 44555555 6666666 44333332 66666666 66666665 445554322
Q ss_pred CCCCCCCCcccccCCccceeeccccccccccccccccccccccccc-cccceecccccccccCCCCCCCCCCCcCEEEEe
Q 002308 831 RHDSSSSSSVIIAFPKLKSLSIFEMEELEEWDYGITRTGNTFINIM-PRLSSLTINYCSKLKALPDHIHQTTTLKELRIG 909 (938)
Q Consensus 831 ~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~~~~~~~~~~~~~~~~l-~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~ 909 (938)
..++|+.|++.++..++.++.. .+..+ ++|+.|++++| .++.+|.. .+++|+.|+++
T Consensus 177 ------------~~~~L~~L~L~~n~~l~~i~~~-------~~~~l~~~L~~L~l~~N-~l~~l~~~--~~~~L~~L~l~ 234 (239)
T 2xwt_C 177 ------------NGTKLDAVYLNKNKYLTVIDKD-------AFGGVYSGPSLLDVSQT-SVTALPSK--GLEHLKELIAR 234 (239)
T ss_dssp ------------TTCEEEEEECTTCTTCCEECTT-------TTTTCSBCCSEEECTTC-CCCCCCCT--TCTTCSEEECT
T ss_pred ------------CCCCCCEEEcCCCCCcccCCHH-------HhhccccCCcEEECCCC-ccccCChh--HhccCceeecc
Confidence 1146666666665444444321 13356 88888888885 56777765 57888888888
Q ss_pred cCcc
Q 002308 910 ECDL 913 (938)
Q Consensus 910 ~c~~ 913 (938)
+|..
T Consensus 235 ~~~~ 238 (239)
T 2xwt_C 235 NTWT 238 (239)
T ss_dssp TC--
T ss_pred CccC
Confidence 8764
No 94
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=99.62 E-value=2.3e-14 Score=156.50 Aligned_cols=291 Identities=13% Similarity=0.105 Sum_probs=175.9
Q ss_pred CCCCceecchhhHHHHHHHHhccCcccCCCeEEEEEEccCCChHHHHHHHHhhhhhhhcccCeEEEEEeCCCC------C
Q 002308 147 IDEEEICGRVGERNALLSMLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNHVEVKREFDKTLWVCVSETF------D 220 (938)
Q Consensus 147 ~~~~~~vGr~~~~~~l~~~l~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~------~ 220 (938)
..+..|+||+.+++++.+++.. + +++.|+|++|+|||||++++++.. . .+|+++.... +
T Consensus 9 ~~~~~~~gR~~el~~L~~~l~~-------~-~~v~i~G~~G~GKT~Ll~~~~~~~------~-~~~~~~~~~~~~~~~~~ 73 (350)
T 2qen_A 9 TRREDIFDREEESRKLEESLEN-------Y-PLTLLLGIRRVGKSSLLRAFLNER------P-GILIDCRELYAERGHIT 73 (350)
T ss_dssp CSGGGSCSCHHHHHHHHHHHHH-------C-SEEEEECCTTSSHHHHHHHHHHHS------S-EEEEEHHHHHHTTTCBC
T ss_pred CChHhcCChHHHHHHHHHHHhc-------C-CeEEEECCCcCCHHHHHHHHHHHc------C-cEEEEeecccccccCCC
Confidence 3456799999999999999863 1 589999999999999999998742 2 6777765432 5
Q ss_pred HHHHHHHHHHHhcC----------------CCC--CCCcHHHHHHHHHHHhcC-ceEEEEEecCCCCCc------cCh-h
Q 002308 221 EFRIAKAMLEALTG----------------STS--NLNALQSLLISIDESIAG-KRFLLVLDDVWDGDY------IKW-E 274 (938)
Q Consensus 221 ~~~~~~~i~~~l~~----------------~~~--~~~~~~~~~~~l~~~l~~-~~~LlVlDdv~~~~~------~~~-~ 274 (938)
...++..+.+.+.. ... ......+....+.+.... ++.+|||||++..+. ..+ .
T Consensus 74 ~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~vlvlDe~~~~~~~~~~~~~~~~~ 153 (350)
T 2qen_A 74 REELIKELQSTISPFQKFQSKFKISLNLKFLTLEPRKLSLREVFRELNDLGEELGEFIVAFDEAQYLRFYGSRGGKELLA 153 (350)
T ss_dssp HHHHHHHHHHHSCSHHHHHHHHTCCCCCGGGTSCGGGCCHHHHHHHHHHHHHHHSCEEEEEETGGGGGGBTTTTTHHHHH
T ss_pred HHHHHHHHHHHHHHHHhHhhhceeEEEecceeeccccchHHHHHHHHHHHHhccCCEEEEEeCHHHHhccCccchhhHHH
Confidence 66667766665532 000 123455566666655543 389999999977532 122 2
Q ss_pred HHHHhhhCCCCCcEEEEEcCChhhhhh----------h-cC-CceEeCCCCChHHHHHHHHHhhcCCCCCchhhHHHHHH
Q 002308 275 PFYRCLKKGLHGSKILITTRKESIVSM----------M-RS-TDIISIEELAEEECWVLFKRLAFFGRSTEECEKLEQIG 342 (938)
Q Consensus 275 ~l~~~l~~~~~gs~ilvTtr~~~v~~~----------~-~~-~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~ 342 (938)
.+...... .++.++|+|++....... . +. ...+.+.+|+.+|+.+++............ .+.+
T Consensus 154 ~L~~~~~~-~~~~~~il~g~~~~~l~~~l~~~~~~~~l~~~~~~~i~l~pl~~~e~~~~l~~~~~~~~~~~~----~~~~ 228 (350)
T 2qen_A 154 LFAYAYDS-LPNLKIILTGSEVGLLHDFLKITDYESPLYGRIAGEVLVKPFDKDTSVEFLKRGFREVNLDVP----ENEI 228 (350)
T ss_dssp HHHHHHHH-CTTEEEEEEESSHHHHHHHHCTTCTTSTTTTCCCEEEECCCCCHHHHHHHHHHHHHTTTCCCC----HHHH
T ss_pred HHHHHHHh-cCCeEEEEECCcHHHHHHHHhhcCCCCccccCccceeeCCCCCHHHHHHHHHHHHHHcCCCCC----HHHH
Confidence 22222222 257789999887643111 1 11 247999999999999999875422111111 2347
Q ss_pred HHHHHhcCCChhHHHHHHhhhcCCCCHHHHHH-HHhccccccccccccchhhHHhhhccC---ChhHHHHHhHhccCCCC
Q 002308 343 QRIARKCKGLPLAAKTMGSLMSSKKTEEEWKR-ILNSDLWKVEEIEKGVLTPLWLSYNDL---PSRVKRCFSYCAVFPKD 418 (938)
Q Consensus 343 ~~i~~~~~g~Plai~~~~~~l~~~~~~~~w~~-~~~~~~~~~~~~~~~~~~~l~~sy~~L---~~~~k~~f~~~~~fp~~ 418 (938)
..+++.++|+|+++..++..+....+...+.. +.+. +...+.-.+..+ ++..+..+..+|. .
T Consensus 229 ~~i~~~tgG~P~~l~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~l~~l~~~~~~~~~~l~~la~-g-- 294 (350)
T 2qen_A 229 EEAVELLDGIPGWLVVFGVEYLRNGDFGRAMKRTLEV-----------AKGLIMGELEELRRRSPRYVDILRAIAL-G-- 294 (350)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCCHHHHHHHHHHH-----------HHHHHHHHHHHHHHHCHHHHHHHHHHHT-T--
T ss_pred HHHHHHhCCCHHHHHHHHHHHhccccHhHHHHHHHHH-----------HHHHHHHHHHHHHhCChhHHHHHHHHHh-C--
Confidence 79999999999999998875432112222211 1110 111111112222 6788899999987 2
Q ss_pred cccChHHHHHHHHHcCCCcchhccccchHHHHHHHHHHHHHhcccccccccCCCCceeEEE-echhHHHHH
Q 002308 419 YNIKKDELITLWMAQGYLSAEAAEQDEEMETIGEEYFGILASRSFFQEFKKSYDNRIIACK-MHDMVHDLA 488 (938)
Q Consensus 419 ~~i~~~~li~~w~a~g~i~~~~~~~~~~~~~~~~~~~~~L~~~~ll~~~~~~~~~~~~~~~-mhdlv~~~~ 488 (938)
.++...+........ .+. .......+++.|.+.+++.... + .|. .|++++++.
T Consensus 295 -~~~~~~l~~~~~~~~--------~~~-~~~~~~~~l~~L~~~gli~~~~----~---~y~~~~p~~~~~~ 348 (350)
T 2qen_A 295 -YNRWSLIRDYLAVKG--------TKI-PEPRLYALLENLKKMNWIVEED----N---TYKIADPVVATVL 348 (350)
T ss_dssp -CCSHHHHHHHHHHTT--------CCC-CHHHHHHHHHHHHHTTSEEEET----T---EEEESSHHHHHHH
T ss_pred -CCCHHHHHHHHHHHh--------CCC-CHHHHHHHHHHHHhCCCEEecC----C---EEEEecHHHHHHH
Confidence 234444443332210 001 1233567899999999997541 2 244 477777764
No 95
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.62 E-value=6.1e-17 Score=175.89 Aligned_cols=202 Identities=17% Similarity=0.160 Sum_probs=134.0
Q ss_pred CCeeEEecCCCCCCcccCccccccCCCCeeeecCCcccc--ccccccCCCCccEEEcCCCCCcccccccccccCccceee
Q 002308 568 TSLRALDFPSFYLPLEIPRNIEKLVHLRYLNLSDQKIKK--LPETLCELYNLEKLDISGCSDLRELPKGIGKLINMKHLL 645 (938)
Q Consensus 568 ~~Lr~L~L~~n~~~~~lp~~~~~l~~L~~L~L~~~~i~~--lp~~i~~l~~L~~L~l~~~~~l~~lp~~i~~l~~L~~L~ 645 (938)
+.+++|++++|.+.+..+ .+..+++|++|+|++|.+.. +|..+..+++|++|++++|......|..+..+++|++|+
T Consensus 70 ~~l~~L~l~~n~l~~~~~-~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~ 148 (336)
T 2ast_B 70 QGVIAFRCPRSFMDQPLA-EHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLN 148 (336)
T ss_dssp TTCSEEECTTCEECSCCC-SCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEE
T ss_pred ccceEEEcCCccccccch-hhccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEE
Confidence 678888888887444433 45678888888888888762 777788888888888888875556777788888888888
Q ss_pred cCCCcccc--cCCccCCCCCCCcccCeeEe-cCCCCCCCCcccccccccccccCcceeecCcCCCCChhhhhhhhccCCC
Q 002308 646 NSGTRSLR--YMPVGIGRLTGLRTLGEFHV-SAGGGVDGSKACRLESLKNLEHLQVCCIRRLGDVSDVGEAKLLELDKKK 722 (938)
Q Consensus 646 l~~~~~~~--~~p~~l~~l~~L~~L~l~~~-~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~~~ 722 (938)
+++|.... .++..+..+++|++|++++| .+.. ......+..++
T Consensus 149 L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~----------------------------------~~~~~~~~~l~ 194 (336)
T 2ast_B 149 LSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTE----------------------------------KHVQVAVAHVS 194 (336)
T ss_dssp CTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCH----------------------------------HHHHHHHHHSC
T ss_pred CCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcCh----------------------------------HHHHHHHHhcc
Confidence 88873222 24444555666666665554 3221 00111234455
Q ss_pred -cCCceEEEEec--CCCCCCCCCccchHHHHhhCCCCCCCCeEEEeeec-CCCCCCCchhccCCCCEEEEecCCCCCc--
Q 002308 723 -YLSRLRLEFDK--KGGGGGRRKNEDDQLLLEALQPPLNLKELEIHYYG-GNTVFPSWMASLTNLKSLDLCFCENCEQ-- 796 (938)
Q Consensus 723 -~L~~L~L~~~~--~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~-~~~~~p~~~~~l~~L~~L~L~~~~~~~~-- 796 (938)
+|+.|++++|. +. ...++..+..+++|+.|++++|. ++...+..+..+++|+.|+|++|.....
T Consensus 195 ~~L~~L~l~~~~~~~~----------~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~ 264 (336)
T 2ast_B 195 ETITQLNLSGYRKNLQ----------KSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPET 264 (336)
T ss_dssp TTCCEEECCSCGGGSC----------HHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGG
T ss_pred cCCCEEEeCCCcccCC----------HHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHH
Confidence 66666666652 22 13345555667788888888887 5544566777888888888888852211
Q ss_pred CCCCCCCCccceeecccc
Q 002308 797 LPPLGKLPSLEQLFISYM 814 (938)
Q Consensus 797 l~~l~~l~~L~~L~L~~~ 814 (938)
+..++++++|+.|++++|
T Consensus 265 ~~~l~~~~~L~~L~l~~~ 282 (336)
T 2ast_B 265 LLELGEIPTLKTLQVFGI 282 (336)
T ss_dssp GGGGGGCTTCCEEECTTS
T ss_pred HHHHhcCCCCCEEeccCc
Confidence 223777888888888887
No 96
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=99.61 E-value=1.9e-14 Score=161.08 Aligned_cols=304 Identities=14% Similarity=0.061 Sum_probs=180.6
Q ss_pred CCCceecchhhHHHHHHHH-hccCcccCCCeEEEEE--EccCCChHHHHHHHHhhhhhhhc---ccC-eEEEEEeCCCCC
Q 002308 148 DEEEICGRVGERNALLSML-LCESSEQQKGLHIISI--VGMGGIGKTTLAQLACNHVEVKR---EFD-KTLWVCVSETFD 220 (938)
Q Consensus 148 ~~~~~vGr~~~~~~l~~~l-~~~~~~~~~~~~vv~i--~G~~GiGKTtLa~~v~~~~~~~~---~f~-~~~wv~~~~~~~ 220 (938)
.+..|+||+.+++++.+++ .............+.| +|++|+||||||+++++...... .|. .++|+.+....+
T Consensus 20 ~p~~l~gR~~el~~l~~~l~~~~~~~~~~~~~~~li~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (412)
T 1w5s_A 20 IPPELRVRRGEAEALARIYLNRLLSGAGLSDVNMIYGSIGRVGIGKTTLAKFTVKRVSEAAAKEGLTVKQAYVNAFNAPN 99 (412)
T ss_dssp CCSSCSSSCHHHHHHHHHHHHHHHTSSCBCCEEEEEECTTCCSSSHHHHHHHHHHHHHHHHHHTTCCEEEEEEEGGGCCS
T ss_pred CCCCCCChHHHHHHHHHHHhHHHhcCCCCCCCEEEEeCcCcCCCCHHHHHHHHHHHHHHHHhccCCceeEEEEECCCCCC
Confidence 3467999999999999988 5321100023456777 99999999999999998532211 122 367888777778
Q ss_pred HHHHHHHHHHHhcCCCCC-CCcHHHHHHHHHHHhc--CceEEEEEecCCCCCc------cChhHHHHhhhCC---C--CC
Q 002308 221 EFRIAKAMLEALTGSTSN-LNALQSLLISIDESIA--GKRFLLVLDDVWDGDY------IKWEPFYRCLKKG---L--HG 286 (938)
Q Consensus 221 ~~~~~~~i~~~l~~~~~~-~~~~~~~~~~l~~~l~--~~~~LlVlDdv~~~~~------~~~~~l~~~l~~~---~--~g 286 (938)
...++..++.+++..... .....+....+.+.+. +++++|||||++.... ..+..+...+... . .+
T Consensus 100 ~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~llvlDe~~~l~~~~~~~~~~l~~l~~~~~~~~~~~~~~~ 179 (412)
T 1w5s_A 100 LYTILSLIVRQTGYPIQVRGAPALDILKALVDNLYVENHYLLVILDEFQSMLSSPRIAAEDLYTLLRVHEEIPSRDGVNR 179 (412)
T ss_dssp HHHHHHHHHHHHTCCCCCTTCCHHHHHHHHHHHHHHHTCEEEEEEESTHHHHSCTTSCHHHHHHHHTHHHHSCCTTSCCB
T ss_pred HHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEEeCHHHHhhccCcchHHHHHHHHHHHhcccCCCCce
Confidence 889999999998754322 2234555566666554 6799999999976421 2233333333322 2 34
Q ss_pred cEEEEEcCChhhhhhhc---------CCceEeCCCCChHHHHHHHHHhhcCCCCCchhhHHHHHHHHHHHhcC------C
Q 002308 287 SKILITTRKESIVSMMR---------STDIISIEELAEEECWVLFKRLAFFGRSTEECEKLEQIGQRIARKCK------G 351 (938)
Q Consensus 287 s~ilvTtr~~~v~~~~~---------~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~------g 351 (938)
..||+||+...+...+. ....+.+.+++.++++++|...+....... ....+....|++.++ |
T Consensus 180 v~lI~~~~~~~~~~~l~~~~~~~~~~~~~~i~l~~l~~~e~~~ll~~~~~~~~~~~--~~~~~~~~~i~~~~~~~~~~~G 257 (412)
T 1w5s_A 180 IGFLLVASDVRALSYMREKIPQVESQIGFKLHLPAYKSRELYTILEQRAELGLRDT--VWEPRHLELISDVYGEDKGGDG 257 (412)
T ss_dssp EEEEEEEEETHHHHHHHHHCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHHBCTT--SCCHHHHHHHHHHHCGGGTSCC
T ss_pred EEEEEEeccccHHHHHhhhcchhhhhcCCeeeeCCCCHHHHHHHHHHHHHhcCCCC--CCChHHHHHHHHHHHHhccCCC
Confidence 45787887655332111 122399999999999999976542100000 011244778899999 9
Q ss_pred ChhHHHHHHhhhc------CC--CCHHHHHHHHhccccccccccccc-hhhHHhhhccCChhHHHHHhHhccCC--CCcc
Q 002308 352 LPLAAKTMGSLMS------SK--KTEEEWKRILNSDLWKVEEIEKGV-LTPLWLSYNDLPSRVKRCFSYCAVFP--KDYN 420 (938)
Q Consensus 352 ~Plai~~~~~~l~------~~--~~~~~w~~~~~~~~~~~~~~~~~~-~~~l~~sy~~L~~~~k~~f~~~~~fp--~~~~ 420 (938)
.|..+..++.... .. -+...+....... . ...+.-++..||.+.+.++..++.+. .+..
T Consensus 258 ~p~~~~~l~~~a~~~a~~~~~~~i~~~~v~~~~~~~----------~~~~~~~~~l~~l~~~~~~~l~aia~l~~~~~~~ 327 (412)
T 1w5s_A 258 SARRAIVALKMACEMAEAMGRDSLSEDLVRKAVSEN----------EAASIQTHELEALSIHELIILRLIAEATLGGMEW 327 (412)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHC----------------CCSSSSSCHHHHHHHHHHHHHHHTTCSS
T ss_pred cHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHH----------hccchHHHHHHcCCHHHHHHHHHHHHHHhcCCCC
Confidence 9976655543211 01 1233333322211 1 22344567789999999999888653 2335
Q ss_pred cChHHHHHHHHHc--CCCcchhccccchHHHHHHHHHHHHHhcccccccc
Q 002308 421 IKKDELITLWMAQ--GYLSAEAAEQDEEMETIGEEYFGILASRSFFQEFK 468 (938)
Q Consensus 421 i~~~~li~~w~a~--g~i~~~~~~~~~~~~~~~~~~~~~L~~~~ll~~~~ 468 (938)
++...+...+... .... .. .........+++.|...+++....
T Consensus 328 ~~~~~~~~~~~~~~~~~~~----~~-~~~~~~~~~~l~~L~~~gli~~~~ 372 (412)
T 1w5s_A 328 INAGLLRQRYEDASLTMYN----VK-PRGYTQYHIYLKHLTSLGLVDAKP 372 (412)
T ss_dssp BCHHHHHHHHHHHHHHHSC----CC-CCCHHHHHHHHHHHHHTTSEEEEC
T ss_pred ccHHHHHHHHHHHHHhhcC----CC-CCCHHHHHHHHHHHHhCCCEEeec
Confidence 5555555444210 0000 00 011233456799999999997653
No 97
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.60 E-value=6.5e-18 Score=199.33 Aligned_cols=355 Identities=15% Similarity=0.082 Sum_probs=197.0
Q ss_pred cccceEEEEccCCCc-----CcccccccCceeEEeccCCCCCCCCchhhHHHHHhccCCCeeEEecCCCCCCcccCcccc
Q 002308 515 EKVRHLMLIMGKEST-----FPISTCRAKRIRSLLIEWPEFGHSSLNGEILEELFRESTSLRALDFPSFYLPLEIPRNIE 589 (938)
Q Consensus 515 ~~~r~l~l~~~~~~~-----~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~n~~~~~lp~~~~ 589 (938)
+++++|++.++.+.. ++.....+++|++|.+.++. ..+....+..++..+++|++|++++|.....+|..+.
T Consensus 156 ~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~---~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~~ 232 (594)
T 2p1m_B 156 RNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLA---SEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQ 232 (594)
T ss_dssp TTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCC---SCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHHHH
T ss_pred CCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccC---CcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHHHh
Confidence 456666665554332 12222355667777666654 1122233444455567777777777643444666666
Q ss_pred ccCCCCeeeecCC-------ccccccccccCCCCccEE-EcCCCCCcccccccccccCccceeecCCCccccc-CCccCC
Q 002308 590 KLVHLRYLNLSDQ-------KIKKLPETLCELYNLEKL-DISGCSDLRELPKGIGKLINMKHLLNSGTRSLRY-MPVGIG 660 (938)
Q Consensus 590 ~l~~L~~L~L~~~-------~i~~lp~~i~~l~~L~~L-~l~~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~-~p~~l~ 660 (938)
.+++|++|+++++ .+..++..+.++++|+.| .+.+.. ...+|..+..+++|++|++++|..... ++..+.
T Consensus 233 ~~~~L~~L~l~~~~~~~~~~~~~~l~~~l~~~~~L~~Ls~~~~~~-~~~l~~~~~~~~~L~~L~L~~~~l~~~~l~~~~~ 311 (594)
T 2p1m_B 233 RAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDAV-PAYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLC 311 (594)
T ss_dssp HCTTCSEEECSBCCCCCCHHHHHHHHHHHHTCTTCCEEECCBTCC-GGGGGGGHHHHTTCCEEECTTCCCCHHHHHHHHT
T ss_pred cCCcceEcccccccCccchhhHHHHHHHHhcCCCcccccCCcccc-hhhHHHHHHhhCCCCEEEccCCCCCHHHHHHHHh
Confidence 6777777774433 234555566777777777 444433 345666566788899999988863322 222256
Q ss_pred CCCCCcccCeeEecCCCCCCCCcccccccccccccCcceeecCc--CCCCChhhhhhhh-ccCCCcCCceEEEEecCCCC
Q 002308 661 RLTGLRTLGEFHVSAGGGVDGSKACRLESLKNLEHLQVCCIRRL--GDVSDVGEAKLLE-LDKKKYLSRLRLEFDKKGGG 737 (938)
Q Consensus 661 ~l~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~--~~~~~~~~~~~~~-l~~~~~L~~L~L~~~~~~~~ 737 (938)
++++|+.|++.+| ... ..+......+++|+.|++..+... ............. ...+++|+.|.++++.+++
T Consensus 312 ~~~~L~~L~l~~~-~~~---~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~~~~~l~~- 386 (594)
T 2p1m_B 312 QCPKLQRLWVLDY-IED---AGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTN- 386 (594)
T ss_dssp TCTTCCEEEEEGG-GHH---HHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEEEESCCCH-
T ss_pred cCCCcCEEeCcCc-cCH---HHHHHHHHhCCCCCEEEEecCcccccccCCCCCHHHHHHHHHhchhHHHHHHhcCCcCH-
Confidence 7788888888766 211 111111234677888877442100 0000111111112 2347888888887776653
Q ss_pred CCCCCccchHHHHhhCCCCCCCCeEEEe--e----ecCCCCCC------CchhccCCCCEEEEecCCCCCc-CCCCCC-C
Q 002308 738 GGRRKNEDDQLLLEALQPPLNLKELEIH--Y----YGGNTVFP------SWMASLTNLKSLDLCFCENCEQ-LPPLGK-L 803 (938)
Q Consensus 738 ~~~~~~~~~~~~~~~l~~~~~L~~L~l~--~----~~~~~~~p------~~~~~l~~L~~L~L~~~~~~~~-l~~l~~-l 803 (938)
..+......+++|+.|+++ + +.++. .| ..+..+++|+.|+|++ .+.+. ++.++. +
T Consensus 387 ---------~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~-~~~~~~~~~l~~~~~~L~~L~L~~-~l~~~~~~~l~~~~ 455 (594)
T 2p1m_B 387 ---------AALITIARNRPNMTRFRLCIIEPKAPDYLTL-EPLDIGFGAIVEHCKDLRRLSLSG-LLTDKVFEYIGTYA 455 (594)
T ss_dssp ---------HHHHHHHHHCTTCCEEEEEESSTTCCCTTTC-CCTHHHHHHHHHHCTTCCEEECCS-SCCHHHHHHHHHHC
T ss_pred ---------HHHHHHHhhCCCcceeEeecccCCCcccccC-CchhhHHHHHHhhCCCccEEeecC-cccHHHHHHHHHhc
Confidence 2222222346788999998 3 33332 22 2255778899999976 23322 222433 7
Q ss_pred CccceeecccccCceEeCcccccCCCCCCCCCCCCcccccCCccceeeccccccccccccccccccccccccccccceec
Q 002308 804 PSLEQLFISYMSSVKRVGDEFLGVESDRHDSSSSSSVIIAFPKLKSLSIFEMEELEEWDYGITRTGNTFINIMPRLSSLT 883 (938)
Q Consensus 804 ~~L~~L~L~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~~~~~~~~~~~~~~~~l~~L~~L~ 883 (938)
++|+.|+|++|. +...+ +.. ....+++|+.|++++|+. .... .......+++|+.|+
T Consensus 456 ~~L~~L~L~~~~-i~~~~--~~~-------------l~~~~~~L~~L~L~~n~~-~~~~------~~~~~~~l~~L~~L~ 512 (594)
T 2p1m_B 456 KKMEMLSVAFAG-DSDLG--MHH-------------VLSGCDSLRKLEIRDCPF-GDKA------LLANASKLETMRSLW 512 (594)
T ss_dssp TTCCEEEEESCC-SSHHH--HHH-------------HHHHCTTCCEEEEESCSC-CHHH------HHHTGGGGGGSSEEE
T ss_pred hhccEeeccCCC-CcHHH--HHH-------------HHhcCCCcCEEECcCCCC-cHHH------HHHHHHhCCCCCEEe
Confidence 889999998886 21110 000 013589999999999863 2211 111234689999999
Q ss_pred ccccccccCCCCCC-CCCCCcCEEEEecCc
Q 002308 884 INYCSKLKALPDHI-HQTTTLKELRIGECD 912 (938)
Q Consensus 884 l~~c~~l~~lp~~l-~~l~~L~~L~l~~c~ 912 (938)
|++|+....-...+ ..++.|+...+..+.
T Consensus 513 l~~~~~~~~~~~~l~~~lp~l~i~~~~~~~ 542 (594)
T 2p1m_B 513 MSSCSVSFGACKLLGQKMPKLNVEVIDERG 542 (594)
T ss_dssp EESSCCBHHHHHHHHHHCTTEEEEEECSSS
T ss_pred eeCCCCCHHHHHHHHHhCCCCEEEEecCCC
Confidence 99997622111112 345777766666554
No 98
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.60 E-value=2e-17 Score=181.18 Aligned_cols=241 Identities=13% Similarity=0.056 Sum_probs=121.9
Q ss_pred ceeEEeccCCCCCCCCchhhHHHHHhccCC-CeeEEecCCCCCCcccCcccccc-----CCCCeeeecCCccccccc-c-
Q 002308 539 RIRSLLIEWPEFGHSSLNGEILEELFREST-SLRALDFPSFYLPLEIPRNIEKL-----VHLRYLNLSDQKIKKLPE-T- 610 (938)
Q Consensus 539 ~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~-~Lr~L~L~~n~~~~~lp~~~~~l-----~~L~~L~L~~~~i~~lp~-~- 610 (938)
+|+.|++++|.+.... .......|..++ +|++|+|++|.+....+..++.+ ++|++|+|++|.++..+. .
T Consensus 23 ~L~~L~Ls~n~l~~~~--~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l 100 (362)
T 3goz_A 23 GVTSLDLSLNNLYSIS--TVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDEL 100 (362)
T ss_dssp TCCEEECTTSCGGGSC--HHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHH
T ss_pred CceEEEccCCCCChHH--HHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHHHH
Confidence 3666666655542211 111123355555 56666666665443334444443 556666666666553322 1
Q ss_pred ---ccCC-CCccEEEcCCCCCcccccccc----cc-cCccceeecCCCcccccCCccCCCCCCCcccCeeEecCCCCCCC
Q 002308 611 ---LCEL-YNLEKLDISGCSDLRELPKGI----GK-LINMKHLLNSGTRSLRYMPVGIGRLTGLRTLGEFHVSAGGGVDG 681 (938)
Q Consensus 611 ---i~~l-~~L~~L~l~~~~~l~~lp~~i----~~-l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~~~~~~~~ 681 (938)
+..+ ++|++|++++|......+..+ .. .++|++|++++|......+..
T Consensus 101 ~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~----------------------- 157 (362)
T 3goz_A 101 VKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDE----------------------- 157 (362)
T ss_dssp HHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHH-----------------------
T ss_pred HHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHH-----------------------
Confidence 3333 556666666665322222222 22 235566666555333211111
Q ss_pred Cccccccccc-ccccCcceeecCcCCCCChhhhhhhhccCC-CcCCceEEEEecCCCCCCCCCccchHHHHhhCCC-CCC
Q 002308 682 SKACRLESLK-NLEHLQVCCIRRLGDVSDVGEAKLLELDKK-KYLSRLRLEFDKKGGGGGRRKNEDDQLLLEALQP-PLN 758 (938)
Q Consensus 682 ~~~~~l~~l~-~L~~L~l~~~~~~~~~~~~~~~~~~~l~~~-~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~ 758 (938)
+...+..++ +|+.|++++|.+..... ......+..+ ++|+.|+|++|.+.+ .....++..+.. +++
T Consensus 158 -l~~~l~~~~~~L~~L~Ls~n~l~~~~~---~~l~~~l~~~~~~L~~L~Ls~N~i~~-------~~~~~l~~~l~~~~~~ 226 (362)
T 3goz_A 158 -LIQILAAIPANVNSLNLRGNNLASKNC---AELAKFLASIPASVTSLDLSANLLGL-------KSYAELAYIFSSIPNH 226 (362)
T ss_dssp -HHHHHHTSCTTCCEEECTTSCGGGSCH---HHHHHHHHTSCTTCCEEECTTSCGGG-------SCHHHHHHHHHHSCTT
T ss_pred -HHHHHhcCCccccEeeecCCCCchhhH---HHHHHHHHhCCCCCCEEECCCCCCCh-------hHHHHHHHHHhcCCCC
Confidence 111122222 45555555554332211 1112233444 477777777776543 122334555544 458
Q ss_pred CCeEEEeeecCCCCCC----CchhccCCCCEEEEecCCCCCc-------CC-CCCCCCccceeeccccc
Q 002308 759 LKELEIHYYGGNTVFP----SWMASLTNLKSLDLCFCENCEQ-------LP-PLGKLPSLEQLFISYMS 815 (938)
Q Consensus 759 L~~L~l~~~~~~~~~p----~~~~~l~~L~~L~L~~~~~~~~-------l~-~l~~l~~L~~L~L~~~~ 815 (938)
|+.|++++|.+....+ ..+..+++|+.|+|++|.+... ++ .+..+++|+.|++++|.
T Consensus 227 L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~ 295 (362)
T 3goz_A 227 VVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKE 295 (362)
T ss_dssp CCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCB
T ss_pred ceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCc
Confidence 8888888888776322 2334678888888888863221 12 36788889999999887
No 99
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.60 E-value=4.5e-17 Score=178.44 Aligned_cols=242 Identities=12% Similarity=0.094 Sum_probs=158.8
Q ss_pred cccceEEEEccCCCcCc-----ccccccC-ceeEEeccCCCCCCCCchhhHHHHHhccC-CCeeEEecCCCCCCcccCcc
Q 002308 515 EKVRHLMLIMGKESTFP-----ISTCRAK-RIRSLLIEWPEFGHSSLNGEILEELFRES-TSLRALDFPSFYLPLEIPRN 587 (938)
Q Consensus 515 ~~~r~l~l~~~~~~~~~-----~~~~~~~-~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~-~~Lr~L~L~~n~~~~~lp~~ 587 (938)
..++++++++|.+...+ ..+..++ +|++|++++|.++... .......+... ++|++|+|++|.+....+..
T Consensus 22 ~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~--~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~ 99 (362)
T 3goz_A 22 HGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKN--SDELVQILAAIPANVTSLNLSGNFLSYKSSDE 99 (362)
T ss_dssp TTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSC--HHHHHHHHHTSCTTCCEEECCSSCGGGSCHHH
T ss_pred CCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHH--HHHHHHHHhccCCCccEEECcCCcCChHHHHH
Confidence 66999999999988754 5667788 8999999999874322 11223334444 99999999999965555554
Q ss_pred ccc----c-CCCCeeeecCCccccccc-c----ccC-CCCccEEEcCCCCCcc----cccccccccC-ccceeecCCCcc
Q 002308 588 IEK----L-VHLRYLNLSDQKIKKLPE-T----LCE-LYNLEKLDISGCSDLR----ELPKGIGKLI-NMKHLLNSGTRS 651 (938)
Q Consensus 588 ~~~----l-~~L~~L~L~~~~i~~lp~-~----i~~-l~~L~~L~l~~~~~l~----~lp~~i~~l~-~L~~L~l~~~~~ 651 (938)
++. + ++|++|+|++|.++..+. . +.. .++|++|++++|.... .++..+..++ +|++|++++|..
T Consensus 100 l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l 179 (362)
T 3goz_A 100 LVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNL 179 (362)
T ss_dssp HHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCG
T ss_pred HHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCCC
Confidence 444 4 899999999999986553 2 444 3699999999998443 4555556665 999999999966
Q ss_pred cccCCccC----CCC-CCCcccCeeEecCCCCCCCCcccccccccccccCcceeecCcCCCCChhhhhhhhccC-CCcCC
Q 002308 652 LRYMPVGI----GRL-TGLRTLGEFHVSAGGGVDGSKACRLESLKNLEHLQVCCIRRLGDVSDVGEAKLLELDK-KKYLS 725 (938)
Q Consensus 652 ~~~~p~~l----~~l-~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~-~~~L~ 725 (938)
....+..+ ..+ ++|++|++++|.+... . .......+.. .++|+
T Consensus 180 ~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~----------------------------~---~~~l~~~l~~~~~~L~ 228 (362)
T 3goz_A 180 ASKNCAELAKFLASIPASVTSLDLSANLLGLK----------------------------S---YAELAYIFSSIPNHVV 228 (362)
T ss_dssp GGSCHHHHHHHHHTSCTTCCEEECTTSCGGGS----------------------------C---HHHHHHHHHHSCTTCC
T ss_pred chhhHHHHHHHHHhCCCCCCEEECCCCCCChh----------------------------H---HHHHHHHHhcCCCCce
Confidence 54443322 233 3666666655543321 0 0111112222 34677
Q ss_pred ceEEEEecCCCCCCCCCccchHHHHhhCCCCCCCCeEEEeeecCCCC-------CCCchhccCCCCEEEEecCCCCCc
Q 002308 726 RLRLEFDKKGGGGGRRKNEDDQLLLEALQPPLNLKELEIHYYGGNTV-------FPSWMASLTNLKSLDLCFCENCEQ 796 (938)
Q Consensus 726 ~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~-------~p~~~~~l~~L~~L~L~~~~~~~~ 796 (938)
.|+|++|.+.+ .....+...+..+++|+.|++++|.+... ++..+..+++|+.|+|++|.+...
T Consensus 229 ~L~Ls~N~l~~-------~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~~ 299 (362)
T 3goz_A 229 SLNLCLNCLHG-------PSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPS 299 (362)
T ss_dssp EEECCSSCCCC-------CCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCGG
T ss_pred EEECcCCCCCc-------HHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCCCc
Confidence 77777776654 12334455667777888888888875441 223445677788888888875543
No 100
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.59 E-value=2e-15 Score=164.37 Aligned_cols=240 Identities=17% Similarity=0.079 Sum_probs=136.3
Q ss_pred ceEEEEccCCCcCcccccccCceeEEeccCCCCCCCCchhhHHHHHhccCCCeeEEecCCCCCCcccC-ccccccCCCCe
Q 002308 518 RHLMLIMGKESTFPISTCRAKRIRSLLIEWPEFGHSSLNGEILEELFRESTSLRALDFPSFYLPLEIP-RNIEKLVHLRY 596 (938)
Q Consensus 518 r~l~l~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~n~~~~~lp-~~~~~l~~L~~ 596 (938)
+.+..++++++.+|..+ .++++.|.+++|.+ ..+++..|.++++|++|+|++|.+.+.+| ..|.++++|.+
T Consensus 12 ~~v~C~~~~Lt~iP~~l--~~~l~~L~Ls~N~i------~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~ 83 (350)
T 4ay9_X 12 RVFLCQESKVTEIPSDL--PRNAIELRFVLTKL------RVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHE 83 (350)
T ss_dssp TEEEEESTTCCSCCTTC--CTTCSEEEEESCCC------SEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCE
T ss_pred CEEEecCCCCCccCcCc--CCCCCEEEccCCcC------CCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhh
Confidence 34555555555555444 24566666666654 23344446666667777776666444444 34556666553
Q ss_pred -eeecCCcccccc-ccccCCCCccEEEcCCCCCcccccccccccCccceeecCCCcccccCCc-cCCCCC-CCcccCeeE
Q 002308 597 -LNLSDQKIKKLP-ETLCELYNLEKLDISGCSDLRELPKGIGKLINMKHLLNSGTRSLRYMPV-GIGRLT-GLRTLGEFH 672 (938)
Q Consensus 597 -L~L~~~~i~~lp-~~i~~l~~L~~L~l~~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~p~-~l~~l~-~L~~L~l~~ 672 (938)
+.+++|.++.+| ..|..+++|++|++++|......+..+....++..|++.++..+..+|. .+..+. .++.|++++
T Consensus 84 ~l~~~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~ 163 (350)
T 4ay9_X 84 IRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNK 163 (350)
T ss_dssp EEEEEETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCS
T ss_pred hhcccCCcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhcccc
Confidence 444556666553 3456666677777766663222222344455556666655434444333 233332 355555555
Q ss_pred ecCCCCCCCCcccccccccccccCcceeecCcCCCCChhhhhhhhccCCCcCCceEEEEecCCCCCCCCCccchHHHH-h
Q 002308 673 VSAGGGVDGSKACRLESLKNLEHLQVCCIRRLGDVSDVGEAKLLELDKKKYLSRLRLEFDKKGGGGGRRKNEDDQLLL-E 751 (938)
Q Consensus 673 ~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~-~ 751 (938)
|.+.... .......+|..|.+.++ |.+.. ++ .
T Consensus 164 N~i~~i~-----~~~f~~~~L~~l~l~~~------------------------------n~l~~------------i~~~ 196 (350)
T 4ay9_X 164 NGIQEIH-----NSAFNGTQLDELNLSDN------------------------------NNLEE------------LPND 196 (350)
T ss_dssp SCCCEEC-----TTSSTTEEEEEEECTTC------------------------------TTCCC------------CCTT
T ss_pred ccccCCC-----hhhccccchhHHhhccC------------------------------CcccC------------CCHH
Confidence 5443211 11112223333333322 22222 11 2
Q ss_pred hCCCCCCCCeEEEeeecCCCCCCCchhccCCCCEEEEecCCCCCcCCCCCCCCccceeeccccc
Q 002308 752 ALQPPLNLKELEIHYYGGNTVFPSWMASLTNLKSLDLCFCENCEQLPPLGKLPSLEQLFISYMS 815 (938)
Q Consensus 752 ~l~~~~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~l~~l~~l~~L~~L~L~~~~ 815 (938)
.+..+++|+.|++++|.++. +|.. .+.+|+.|.+.++...+.+|.+..+++|+.+++.++.
T Consensus 197 ~f~~l~~L~~LdLs~N~l~~-lp~~--~~~~L~~L~~l~~~~l~~lP~l~~l~~L~~l~l~~~~ 257 (350)
T 4ay9_X 197 VFHGASGPVILDISRTRIHS-LPSY--GLENLKKLRARSTYNLKKLPTLEKLVALMEASLTYPS 257 (350)
T ss_dssp TTTTEECCSEEECTTSCCCC-CCSS--SCTTCCEEECTTCTTCCCCCCTTTCCSCCEEECSCHH
T ss_pred HhccCcccchhhcCCCCcCc-cChh--hhccchHhhhccCCCcCcCCCchhCcChhhCcCCCCc
Confidence 45667888999999998888 7764 4778888888888888889999999999999997643
No 101
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.58 E-value=4.5e-15 Score=153.33 Aligned_cols=176 Identities=19% Similarity=0.197 Sum_probs=105.9
Q ss_pred ccceEEEEccCCCcCcccccccCceeEEeccCCCCCCCCchhhHHHHHhccCCCeeEEecCCCCCCcccCccccccCCCC
Q 002308 516 KVRHLMLIMGKESTFPISTCRAKRIRSLLIEWPEFGHSSLNGEILEELFRESTSLRALDFPSFYLPLEIPRNIEKLVHLR 595 (938)
Q Consensus 516 ~~r~l~l~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~n~~~~~lp~~~~~l~~L~ 595 (938)
..+++++.++.+..+|..+. ++++.|.+.+|.+.. +.+..|..+++|++|+|++|.+....|..+..+++|+
T Consensus 15 ~~~~l~~~~~~l~~~p~~~~--~~l~~L~L~~n~l~~------~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 86 (251)
T 3m19_A 15 GKKEVDCQGKSLDSVPSGIP--ADTEKLDLQSTGLAT------LSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELG 86 (251)
T ss_dssp GGTEEECTTCCCSSCCSCCC--TTCCEEECTTSCCCC------CCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCC
T ss_pred CCeEEecCCCCccccCCCCC--CCCCEEEccCCCcCc------cCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCC
Confidence 34556666666666665443 567777777666421 2233366677777777777775555555567777777
Q ss_pred eeeecCCccccccc-cccCCCCccEEEcCCCCCcccccc-cccccCccceeecCCCcccccCCccCCCCCCCcccCeeEe
Q 002308 596 YLNLSDQKIKKLPE-TLCELYNLEKLDISGCSDLRELPK-GIGKLINMKHLLNSGTRSLRYMPVGIGRLTGLRTLGEFHV 673 (938)
Q Consensus 596 ~L~L~~~~i~~lp~-~i~~l~~L~~L~l~~~~~l~~lp~-~i~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~ 673 (938)
+|+|++|.++.+|. .+..+++|++|++++|. +..+|. .+..+++|++|++++|.+....+..++.+++|+.|++++|
T Consensus 87 ~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N 165 (251)
T 3m19_A 87 TLGLANNQLASLPLGVFDHLTQLDKLYLGGNQ-LKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTN 165 (251)
T ss_dssp EEECTTSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred EEECCCCcccccChhHhcccCCCCEEEcCCCc-CCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCC
Confidence 77777777776654 45677777777777776 334443 3566777777777777444333335666777777777666
Q ss_pred cCCCCCCCCcccccccccccccCcceeecCc
Q 002308 674 SAGGGVDGSKACRLESLKNLEHLQVCCIRRL 704 (938)
Q Consensus 674 ~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 704 (938)
.+....+. .+..+++|+.|++.+|.+.
T Consensus 166 ~l~~~~~~----~~~~l~~L~~L~l~~N~~~ 192 (251)
T 3m19_A 166 QLQSVPHG----AFDRLGKLQTITLFGNQFD 192 (251)
T ss_dssp CCSCCCTT----TTTTCTTCCEEECCSCCBC
T ss_pred cCCccCHH----HHhCCCCCCEEEeeCCcee
Confidence 65542221 2445555555555555443
No 102
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.57 E-value=9.6e-15 Score=150.83 Aligned_cols=172 Identities=20% Similarity=0.252 Sum_probs=142.6
Q ss_pred EeeCCcccccCCCCcccccceEEEEccCCCcCc-ccccccCceeEEeccCCCCCCCCchhhHHHHHhccCCCeeEEecCC
Q 002308 499 LEVNGSEELNVPNSLDEKVRHLMLIMGKESTFP-ISTCRAKRIRSLLIEWPEFGHSSLNGEILEELFRESTSLRALDFPS 577 (938)
Q Consensus 499 ~~~~~~~~~~~~~~~~~~~r~l~l~~~~~~~~~-~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~ 577 (938)
.++.......+|...+..++.+.+.++.+...+ ..+..+++|+.|.+++|.+. .+++..|..+++|++|+|++
T Consensus 19 l~~~~~~l~~~p~~~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~------~~~~~~~~~l~~L~~L~L~~ 92 (251)
T 3m19_A 19 VDCQGKSLDSVPSGIPADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQ------TLSAGVFDDLTELGTLGLAN 92 (251)
T ss_dssp EECTTCCCSSCCSCCCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCC------CCCTTTTTTCTTCCEEECTT
T ss_pred EecCCCCccccCCCCCCCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCC------ccCHhHhccCCcCCEEECCC
Confidence 344444444566677789999999999998754 46889999999999999863 23445588899999999999
Q ss_pred CCCCcccCccccccCCCCeeeecCCcccccccc-ccCCCCccEEEcCCCCCcccccc-cccccCccceeecCCCcccccC
Q 002308 578 FYLPLEIPRNIEKLVHLRYLNLSDQKIKKLPET-LCELYNLEKLDISGCSDLRELPK-GIGKLINMKHLLNSGTRSLRYM 655 (938)
Q Consensus 578 n~~~~~lp~~~~~l~~L~~L~L~~~~i~~lp~~-i~~l~~L~~L~l~~~~~l~~lp~-~i~~l~~L~~L~l~~~~~~~~~ 655 (938)
|.+....+..+..+++|++|+|++|.++.+|.. +..+++|++|++++|. +..+|. .+..+++|++|++++|.+....
T Consensus 93 n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~L~~N~l~~~~ 171 (251)
T 3m19_A 93 NQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQ-LQSIPAGAFDKLTNLQTLSLSTNQLQSVP 171 (251)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCSCCC
T ss_pred CcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCc-CCccCHHHcCcCcCCCEEECCCCcCCccC
Confidence 996655667789999999999999999988875 6899999999999998 555555 6899999999999999776555
Q ss_pred CccCCCCCCCcccCeeEecCCC
Q 002308 656 PVGIGRLTGLRTLGEFHVSAGG 677 (938)
Q Consensus 656 p~~l~~l~~L~~L~l~~~~~~~ 677 (938)
+..+..+++|+.|++.+|.+..
T Consensus 172 ~~~~~~l~~L~~L~l~~N~~~c 193 (251)
T 3m19_A 172 HGAFDRLGKLQTITLFGNQFDC 193 (251)
T ss_dssp TTTTTTCTTCCEEECCSCCBCT
T ss_pred HHHHhCCCCCCEEEeeCCceeC
Confidence 5678999999999999998765
No 103
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=99.56 E-value=2.4e-13 Score=148.92 Aligned_cols=292 Identities=12% Similarity=0.108 Sum_probs=172.5
Q ss_pred CCCceecchhhHHHHHHHHhccCcccCCCeEEEEEEccCCChHHHHHHHHhhhhhhhcccCeEEEEEeCCC-----CCHH
Q 002308 148 DEEEICGRVGERNALLSMLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNHVEVKREFDKTLWVCVSET-----FDEF 222 (938)
Q Consensus 148 ~~~~~vGr~~~~~~l~~~l~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~-----~~~~ 222 (938)
.+..|+||+.+++.+.+ +.. +++.|+|++|+|||+|++++++. ... ..+|+.+... .+..
T Consensus 11 ~~~~~~gR~~el~~L~~-l~~---------~~v~i~G~~G~GKT~L~~~~~~~--~~~---~~~~~~~~~~~~~~~~~~~ 75 (357)
T 2fna_A 11 NRKDFFDREKEIEKLKG-LRA---------PITLVLGLRRTGKSSIIKIGINE--LNL---PYIYLDLRKFEERNYISYK 75 (357)
T ss_dssp SGGGSCCCHHHHHHHHH-TCS---------SEEEEEESTTSSHHHHHHHHHHH--HTC---CEEEEEGGGGTTCSCCCHH
T ss_pred CHHHhcChHHHHHHHHH-hcC---------CcEEEECCCCCCHHHHHHHHHHh--cCC---CEEEEEchhhccccCCCHH
Confidence 45679999999999999 741 48999999999999999999884 222 3578887643 3445
Q ss_pred HHHHHHHHHhcC-------------C-------CC---------CCCcHHHHHHHHHHHhcCceEEEEEecCCCCCc---
Q 002308 223 RIAKAMLEALTG-------------S-------TS---------NLNALQSLLISIDESIAGKRFLLVLDDVWDGDY--- 270 (938)
Q Consensus 223 ~~~~~i~~~l~~-------------~-------~~---------~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~~--- 270 (938)
..+..+.+.+.. . .. ......++...+.+... ++++|||||+++.+.
T Consensus 76 ~~~~~l~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~-~~~vlvlDe~~~~~~~~~ 154 (357)
T 2fna_A 76 DFLLELQKEINKLVKRLPSLLKALKNIQGIVIMGNEIKFNWNRKDRLSFANLLESFEQASK-DNVIIVLDEAQELVKLRG 154 (357)
T ss_dssp HHHHHHHHHHHHHHHHCTTHHHHTTTSTTEEECSSSEEEC-----CCCHHHHHHHHHHTCS-SCEEEEEETGGGGGGCTT
T ss_pred HHHHHHHHHHHHHhhhhhHHHHHhcccceEEecceEEEeccCCcchhhHHHHHHHHHhcCC-CCeEEEEECHHHhhccCc
Confidence 555555443310 0 00 12234455555544322 499999999977432
Q ss_pred cChhHHHHhhhCCCCCcEEEEEcCChhhhhh----------h-cC-CceEeCCCCChHHHHHHHHHhhcCCCCCchhhHH
Q 002308 271 IKWEPFYRCLKKGLHGSKILITTRKESIVSM----------M-RS-TDIISIEELAEEECWVLFKRLAFFGRSTEECEKL 338 (938)
Q Consensus 271 ~~~~~l~~~l~~~~~gs~ilvTtr~~~v~~~----------~-~~-~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~ 338 (938)
..|..+...+....++.++|+|++....... . +. ...+.+.+|+.+++.+++...+....... ..
T Consensus 155 ~~~~~~l~~~~~~~~~~~~i~~g~~~~~l~~~l~~~~~~~~l~~r~~~~i~l~~l~~~e~~~~l~~~~~~~~~~~--~~- 231 (357)
T 2fna_A 155 VNLLPALAYAYDNLKRIKFIMSGSEMGLLYDYLRVEDPESPLFGRAFSTVELKPFSREEAIEFLRRGFQEADIDF--KD- 231 (357)
T ss_dssp CCCHHHHHHHHHHCTTEEEEEEESSHHHHHHHTTTTCTTSTTTTCCCEEEEECCCCHHHHHHHHHHHHHHHTCCC--CC-
T ss_pred hhHHHHHHHHHHcCCCeEEEEEcCchHHHHHHHhccCCCCccccCccceeecCCCCHHHHHHHHHHHHHHcCCCC--Cc-
Confidence 2343333333332346789999997653221 1 11 25789999999999999987542111111 11
Q ss_pred HHHHHHHHHhcCCChhHHHHHHhhhcCCCCHHHHHHHHhccccccccccccchhhHH-hhh--ccCChhHHHHHhHhccC
Q 002308 339 EQIGQRIARKCKGLPLAAKTMGSLMSSKKTEEEWKRILNSDLWKVEEIEKGVLTPLW-LSY--NDLPSRVKRCFSYCAVF 415 (938)
Q Consensus 339 ~~~~~~i~~~~~g~Plai~~~~~~l~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~l~-~sy--~~L~~~~k~~f~~~~~f 415 (938)
...|++.++|+|+++..++..+........|..-.. ......+...+. +.+ ..+++..+..+..+|.
T Consensus 232 ---~~~i~~~t~G~P~~l~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~l~~~~~~~~~l~~~~~~~l~~la~- 301 (357)
T 2fna_A 232 ---YEVVYEKIGGIPGWLTYFGFIYLDNKNLDFAINQTL------EYAKKLILKEFENFLHGREIARKRYLNIMRTLSK- 301 (357)
T ss_dssp ---HHHHHHHHCSCHHHHHHHHHHHHHHCCHHHHHHHHH------HHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHTT-
T ss_pred ---HHHHHHHhCCCHHHHHHHHHHHccccchHHHHHHHH------HHHHHHHHHHHHHHhhccccccHHHHHHHHHHHc-
Confidence 268999999999999999877643223333321110 000000111111 111 1678889999999998
Q ss_pred CCCcccChHHHHHHHH-HcCCCcchhccccchHHHHHHHHHHHHHhcccccccccCCCCceeEEE-echhHHHHH
Q 002308 416 PKDYNIKKDELITLWM-AQGYLSAEAAEQDEEMETIGEEYFGILASRSFFQEFKKSYDNRIIACK-MHDMVHDLA 488 (938)
Q Consensus 416 p~~~~i~~~~li~~w~-a~g~i~~~~~~~~~~~~~~~~~~~~~L~~~~ll~~~~~~~~~~~~~~~-mhdlv~~~~ 488 (938)
+. +...+..... ..|. .........+++.|.+.+++.... + .|+ .|++++++.
T Consensus 302 --g~--~~~~l~~~~~~~~g~---------~~~~~~~~~~L~~L~~~gli~~~~----~---~y~f~~~~~~~~l 356 (357)
T 2fna_A 302 --CG--KWSDVKRALELEEGI---------EISDSEIYNYLTQLTKHSWIIKEG----E---KYCPSEPLISLAF 356 (357)
T ss_dssp --CB--CHHHHHHHHHHHHCS---------CCCHHHHHHHHHHHHHTTSEEESS----S---CEEESSHHHHHHT
T ss_pred --CC--CHHHHHHHHHHhcCC---------CCCHHHHHHHHHHHHhCCCEEecC----C---EEEecCHHHHHhh
Confidence 22 4444432211 1121 001233556899999999987532 2 244 577887653
No 104
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.53 E-value=1.9e-14 Score=151.77 Aligned_cols=169 Identities=20% Similarity=0.177 Sum_probs=84.9
Q ss_pred CCCeeEEecCCCCCCcccCccccccCCCCeeeecCCccccccccccCCCCccEEEcCCCCCcccccccccccCccceeec
Q 002308 567 STSLRALDFPSFYLPLEIPRNIEKLVHLRYLNLSDQKIKKLPETLCELYNLEKLDISGCSDLRELPKGIGKLINMKHLLN 646 (938)
Q Consensus 567 ~~~Lr~L~L~~n~~~~~lp~~~~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~l~~~~~l~~lp~~i~~l~~L~~L~l 646 (938)
+++|+.|++++|. ...++ .++.+++|++|+|++|.++.++. +.++++|++|++++|. +..+|. +..+++|++|++
T Consensus 45 l~~L~~L~l~~~~-i~~~~-~~~~l~~L~~L~L~~n~l~~~~~-l~~l~~L~~L~l~~n~-l~~~~~-l~~l~~L~~L~L 119 (291)
T 1h6t_A 45 LNSIDQIIANNSD-IKSVQ-GIQYLPNVTKLFLNGNKLTDIKP-LANLKNLGWLFLDENK-VKDLSS-LKDLKKLKSLSL 119 (291)
T ss_dssp HHTCCEEECTTSC-CCCCT-TGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSC-CCCGGG-GTTCTTCCEEEC
T ss_pred cCcccEEEccCCC-cccCh-hHhcCCCCCEEEccCCccCCCcc-cccCCCCCEEECCCCc-CCCChh-hccCCCCCEEEC
Confidence 4455555555555 33333 25555555555555555555544 5555555555555555 333333 555555555555
Q ss_pred CCCcccccCCccCCCCCCCcccCeeEecCCCCCCCCcccccccccccccCcceeecCcCCCCChhhhhhhhccCCCcCCc
Q 002308 647 SGTRSLRYMPVGIGRLTGLRTLGEFHVSAGGGVDGSKACRLESLKNLEHLQVCCIRRLGDVSDVGEAKLLELDKKKYLSR 726 (938)
Q Consensus 647 ~~~~~~~~~p~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~~~~L~~ 726 (938)
++|.... + ..+..+++|+.|++++|.+.. .. .+..+++|+.
T Consensus 120 ~~n~i~~-~-~~l~~l~~L~~L~l~~n~l~~------~~-------------------------------~l~~l~~L~~ 160 (291)
T 1h6t_A 120 EHNGISD-I-NGLVHLPQLESLYLGNNKITD------IT-------------------------------VLSRLTKLDT 160 (291)
T ss_dssp TTSCCCC-C-GGGGGCTTCCEEECCSSCCCC------CG-------------------------------GGGGCTTCSE
T ss_pred CCCcCCC-C-hhhcCCCCCCEEEccCCcCCc------ch-------------------------------hhccCCCCCE
Confidence 5553222 2 234444444444444443322 01 1223334444
Q ss_pred eEEEEecCCCCCCCCCccchHHHHhhCCCCCCCCeEEEeeecCCCCCCCchhccCCCCEEEEecCCCC
Q 002308 727 LRLEFDKKGGGGGRRKNEDDQLLLEALQPPLNLKELEIHYYGGNTVFPSWMASLTNLKSLDLCFCENC 794 (938)
Q Consensus 727 L~L~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~ 794 (938)
|++++|.+.+ +.. +..+++|+.|++++|.+.. +|. +..+++|+.|++++|.+.
T Consensus 161 L~L~~N~l~~------------~~~-l~~l~~L~~L~L~~N~i~~-l~~-l~~l~~L~~L~l~~n~i~ 213 (291)
T 1h6t_A 161 LSLEDNQISD------------IVP-LAGLTKLQNLYLSKNHISD-LRA-LAGLKNLDVLELFSQECL 213 (291)
T ss_dssp EECCSSCCCC------------CGG-GTTCTTCCEEECCSSCCCB-CGG-GTTCTTCSEEEEEEEEEE
T ss_pred EEccCCcccc------------chh-hcCCCccCEEECCCCcCCC-Chh-hccCCCCCEEECcCCccc
Confidence 4444444433 111 4455666666666666665 443 566677777777776543
No 105
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.52 E-value=9.2e-15 Score=167.12 Aligned_cols=183 Identities=17% Similarity=0.127 Sum_probs=118.7
Q ss_pred CCeeEEecCCCCCCcccCccccccCCCCeeeecCCccccccccccCCCCccEEEcCCCCCcccccccccccCccceeecC
Q 002308 568 TSLRALDFPSFYLPLEIPRNIEKLVHLRYLNLSDQKIKKLPETLCELYNLEKLDISGCSDLRELPKGIGKLINMKHLLNS 647 (938)
Q Consensus 568 ~~Lr~L~L~~n~~~~~lp~~~~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~l~~~~~l~~lp~~i~~l~~L~~L~l~ 647 (938)
.+|++|+|++|.+ ..+|..+. ++|++|+|++|.|+.+| ..+++|++|++++|. +..+|. +.. +|++|+++
T Consensus 59 ~~L~~L~Ls~n~L-~~lp~~l~--~~L~~L~Ls~N~l~~ip---~~l~~L~~L~Ls~N~-l~~ip~-l~~--~L~~L~Ls 128 (571)
T 3cvr_A 59 NQFSELQLNRLNL-SSLPDNLP--PQITVLEITQNALISLP---ELPASLEYLDACDNR-LSTLPE-LPA--SLKHLDVD 128 (571)
T ss_dssp TTCSEEECCSSCC-SCCCSCCC--TTCSEEECCSSCCSCCC---CCCTTCCEEECCSSC-CSCCCC-CCT--TCCEEECC
T ss_pred CCccEEEeCCCCC-CccCHhHc--CCCCEEECcCCCCcccc---cccCCCCEEEccCCC-CCCcch-hhc--CCCEEECC
Confidence 3788899998884 44777664 78999999999888888 457889999999987 555777 655 88899998
Q ss_pred CCcccccCCccCCCCCCCcccCeeEecCCCCCCCCcccccccccccccCcceeecCcCCCCChhhhhhhhccCCCcCCce
Q 002308 648 GTRSLRYMPVGIGRLTGLRTLGEFHVSAGGGVDGSKACRLESLKNLEHLQVCCIRRLGDVSDVGEAKLLELDKKKYLSRL 727 (938)
Q Consensus 648 ~~~~~~~~p~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~~~~L~~L 727 (938)
+|.+.. +|. .+++|+.|++++|.+.. ++ . .+++|+.|++++|.+.. ++. +. ++|+.|
T Consensus 129 ~N~l~~-lp~---~l~~L~~L~Ls~N~l~~-lp----~---~l~~L~~L~Ls~N~L~~-lp~--------l~--~~L~~L 185 (571)
T 3cvr_A 129 NNQLTM-LPE---LPALLEYINADNNQLTM-LP----E---LPTSLEVLSVRNNQLTF-LPE--------LP--ESLEAL 185 (571)
T ss_dssp SSCCSC-CCC---CCTTCCEEECCSSCCSC-CC----C---CCTTCCEEECCSSCCSC-CCC--------CC--TTCCEE
T ss_pred CCcCCC-CCC---cCccccEEeCCCCccCc-CC----C---cCCCcCEEECCCCCCCC-cch--------hh--CCCCEE
Confidence 885543 665 57788888888877654 11 1 34566666666665543 221 11 556666
Q ss_pred EEEEecCCCCCCCCCccchHHHHhhCC-----CCCCCCeEEEeeecCCCCCCCchhccCCCCEEEEecCCCCCcC
Q 002308 728 RLEFDKKGGGGGRRKNEDDQLLLEALQ-----PPLNLKELEIHYYGGNTVFPSWMASLTNLKSLDLCFCENCEQL 797 (938)
Q Consensus 728 ~L~~~~~~~~~~~~~~~~~~~~~~~l~-----~~~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~l 797 (938)
+|++|.+.. ++. +. ..+.|+.|+|++|.++. +|..+..+++|+.|+|++|.+.+..
T Consensus 186 ~Ls~N~L~~------------lp~-~~~~L~~~~~~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~L~~N~l~~~~ 246 (571)
T 3cvr_A 186 DVSTNLLES------------LPA-VPVRNHHSEETEIFFRCRENRITH-IPENILSLDPTCTIILEDNPLSSRI 246 (571)
T ss_dssp ECCSSCCSS------------CCC-CC--------CCEEEECCSSCCCC-CCGGGGGSCTTEEEECCSSSCCHHH
T ss_pred ECcCCCCCc------------hhh-HHHhhhcccccceEEecCCCccee-cCHHHhcCCCCCEEEeeCCcCCCcC
Confidence 666665543 111 11 11222666666666665 6666666666666666666655443
No 106
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.52 E-value=9.7e-15 Score=169.08 Aligned_cols=170 Identities=21% Similarity=0.167 Sum_probs=87.8
Q ss_pred cCCCeeEEecCCCCCCcccCccccccCCCCeeeecCCccccccccccCCCCccEEEcCCCCCcccccccccccCccceee
Q 002308 566 ESTSLRALDFPSFYLPLEIPRNIEKLVHLRYLNLSDQKIKKLPETLCELYNLEKLDISGCSDLRELPKGIGKLINMKHLL 645 (938)
Q Consensus 566 ~~~~Lr~L~L~~n~~~~~lp~~~~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~l~~~~~l~~lp~~i~~l~~L~~L~ 645 (938)
.+++|+.|++++|. +..+| .++.|++|++|+|++|.+..+|. +..+++|+.|+|++|. +..+| .+..+++|++|+
T Consensus 41 ~L~~L~~L~l~~n~-i~~l~-~l~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~-l~~l~-~l~~l~~L~~L~ 115 (605)
T 1m9s_A 41 ELNSIDQIIANNSD-IKSVQ-GIQYLPNVTKLFLNGNKLTDIKP-LTNLKNLGWLFLDENK-IKDLS-SLKDLKKLKSLS 115 (605)
T ss_dssp HHTTCCCCBCTTCC-CCCCT-TGGGCTTCCEEECTTSCCCCCGG-GGGCTTCCEEECCSSC-CCCCT-TSTTCTTCCEEE
T ss_pred cCCCCCEEECcCCC-CCCCh-HHccCCCCCEEEeeCCCCCCChh-hccCCCCCEEECcCCC-CCCCh-hhccCCCCCEEE
Confidence 34455555555555 33333 35555555555555555555544 5555555555555554 33333 355555555555
Q ss_pred cCCCcccccCCccCCCCCCCcccCeeEecCCCCCCCCcccccccccccccCcceeecCcCCCCChhhhhhhhccCCCcCC
Q 002308 646 NSGTRSLRYMPVGIGRLTGLRTLGEFHVSAGGGVDGSKACRLESLKNLEHLQVCCIRRLGDVSDVGEAKLLELDKKKYLS 725 (938)
Q Consensus 646 l~~~~~~~~~p~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~~~~L~ 725 (938)
|++|.+.. + +.+..+++|+.|++++|.+.. . ..+..+++|+
T Consensus 116 Ls~N~l~~-l-~~l~~l~~L~~L~Ls~N~l~~----------------------------l---------~~l~~l~~L~ 156 (605)
T 1m9s_A 116 LEHNGISD-I-NGLVHLPQLESLYLGNNKITD----------------------------I---------TVLSRLTKLD 156 (605)
T ss_dssp CTTSCCCC-C-GGGGGCTTCSEEECCSSCCCC----------------------------C---------GGGGSCTTCS
T ss_pred ecCCCCCC-C-ccccCCCccCEEECCCCccCC----------------------------c---------hhhcccCCCC
Confidence 55553222 2 224444444444444443322 1 1344455555
Q ss_pred ceEEEEecCCCCCCCCCccchHHHHhhCCCCCCCCeEEEeeecCCCCCCCchhccCCCCEEEEecCCCC
Q 002308 726 RLRLEFDKKGGGGGRRKNEDDQLLLEALQPPLNLKELEIHYYGGNTVFPSWMASLTNLKSLDLCFCENC 794 (938)
Q Consensus 726 ~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~ 794 (938)
.|+|+.|.+.. +.. +..+++|+.|+|++|.+.. +| .+..+++|+.|+|++|.+.
T Consensus 157 ~L~Ls~N~l~~------------~~~-l~~l~~L~~L~Ls~N~i~~-l~-~l~~l~~L~~L~L~~N~l~ 210 (605)
T 1m9s_A 157 TLSLEDNQISD------------IVP-LAGLTKLQNLYLSKNHISD-LR-ALAGLKNLDVLELFSQECL 210 (605)
T ss_dssp EEECCSSCCCC------------CGG-GTTCTTCCEEECCSSCCCB-CG-GGTTCTTCSEEECCSEEEE
T ss_pred EEECcCCcCCC------------chh-hccCCCCCEEECcCCCCCC-Ch-HHccCCCCCEEEccCCcCc
Confidence 66665555543 111 5556666666666666665 43 3566666777777666544
No 107
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.52 E-value=1.2e-14 Score=153.25 Aligned_cols=191 Identities=18% Similarity=0.150 Sum_probs=145.9
Q ss_pred eeEEecCCCCCCcccCccccccCCCCeeeecCCccccccccccCCCCccEEEcCCCCCcccccccccccCccceeecCCC
Q 002308 570 LRALDFPSFYLPLEIPRNIEKLVHLRYLNLSDQKIKKLPETLCELYNLEKLDISGCSDLRELPKGIGKLINMKHLLNSGT 649 (938)
Q Consensus 570 Lr~L~L~~n~~~~~lp~~~~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~l~~~~~l~~lp~~i~~l~~L~~L~l~~~ 649 (938)
+..+.+..+.+... ..+..+.+|++|++++|.+..+|. +..+++|++|++++|. +..++. +..+++|++|++++|
T Consensus 26 ~~~~~l~~~~~~~~--~~~~~l~~L~~L~l~~~~i~~~~~-~~~l~~L~~L~L~~n~-l~~~~~-l~~l~~L~~L~l~~n 100 (291)
T 1h6t_A 26 TIKDNLKKKSVTDA--VTQNELNSIDQIIANNSDIKSVQG-IQYLPNVTKLFLNGNK-LTDIKP-LANLKNLGWLFLDEN 100 (291)
T ss_dssp HHHHHTTCSCTTSE--ECHHHHHTCCEEECTTSCCCCCTT-GGGCTTCCEEECCSSC-CCCCGG-GTTCTTCCEEECCSS
T ss_pred HHHHHhcCCCcccc--cchhhcCcccEEEccCCCcccChh-HhcCCCCCEEEccCCc-cCCCcc-cccCCCCCEEECCCC
Confidence 34455666653322 235689999999999999998864 8999999999999998 566666 899999999999998
Q ss_pred cccccCCccCCCCCCCcccCeeEecCCCCCCCCcccccccccccccCcceeecCcCCCCChhhhhhhhccCCCcCCceEE
Q 002308 650 RSLRYMPVGIGRLTGLRTLGEFHVSAGGGVDGSKACRLESLKNLEHLQVCCIRRLGDVSDVGEAKLLELDKKKYLSRLRL 729 (938)
Q Consensus 650 ~~~~~~p~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L 729 (938)
... .+| .++.+++|+.|++++|.+.. . ..+..+++|+.|++
T Consensus 101 ~l~-~~~-~l~~l~~L~~L~L~~n~i~~----------------------------~---------~~l~~l~~L~~L~l 141 (291)
T 1h6t_A 101 KVK-DLS-SLKDLKKLKSLSLEHNGISD----------------------------I---------NGLVHLPQLESLYL 141 (291)
T ss_dssp CCC-CGG-GGTTCTTCCEEECTTSCCCC----------------------------C---------GGGGGCTTCCEEEC
T ss_pred cCC-CCh-hhccCCCCCEEECCCCcCCC----------------------------C---------hhhcCCCCCCEEEc
Confidence 543 333 36777777777766655432 0 02445567788888
Q ss_pred EEecCCCCCCCCCccchHHHHhhCCCCCCCCeEEEeeecCCCCCCCchhccCCCCEEEEecCCCCCcCCCCCCCCcccee
Q 002308 730 EFDKKGGGGGRRKNEDDQLLLEALQPPLNLKELEIHYYGGNTVFPSWMASLTNLKSLDLCFCENCEQLPPLGKLPSLEQL 809 (938)
Q Consensus 730 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~l~~l~~l~~L~~L 809 (938)
++|.+.. + ..+..+++|+.|++++|.+.+ ++. +..+++|+.|+|++|.+.. ++.+..+++|+.|
T Consensus 142 ~~n~l~~------------~-~~l~~l~~L~~L~L~~N~l~~-~~~-l~~l~~L~~L~L~~N~i~~-l~~l~~l~~L~~L 205 (291)
T 1h6t_A 142 GNNKITD------------I-TVLSRLTKLDTLSLEDNQISD-IVP-LAGLTKLQNLYLSKNHISD-LRALAGLKNLDVL 205 (291)
T ss_dssp CSSCCCC------------C-GGGGGCTTCSEEECCSSCCCC-CGG-GTTCTTCCEEECCSSCCCB-CGGGTTCTTCSEE
T ss_pred cCCcCCc------------c-hhhccCCCCCEEEccCCcccc-chh-hcCCCccCEEECCCCcCCC-ChhhccCCCCCEE
Confidence 8887765 1 467778999999999999998 555 8899999999999997654 5679999999999
Q ss_pred ecccccCceEeC
Q 002308 810 FISYMSSVKRVG 821 (938)
Q Consensus 810 ~L~~~~~l~~~~ 821 (938)
++++|+ +...|
T Consensus 206 ~l~~n~-i~~~~ 216 (291)
T 1h6t_A 206 ELFSQE-CLNKP 216 (291)
T ss_dssp EEEEEE-EECCC
T ss_pred ECcCCc-ccCCc
Confidence 999997 44333
No 108
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.49 E-value=3.8e-14 Score=142.65 Aligned_cols=153 Identities=16% Similarity=0.101 Sum_probs=118.9
Q ss_pred cceEEEEccCCCcCcccccccCceeEEeccCCCCCCCCchhhHHHHHhccCCCeeEEecCCCCCCcccCccccccCCCCe
Q 002308 517 VRHLMLIMGKESTFPISTCRAKRIRSLLIEWPEFGHSSLNGEILEELFRESTSLRALDFPSFYLPLEIPRNIEKLVHLRY 596 (938)
Q Consensus 517 ~r~l~l~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~n~~~~~lp~~~~~l~~L~~ 596 (938)
-+.+.+.++.++.+|..+. ++++.|.+.+|.+ ..+++..|..+++|++|+|++|.+....|..|..+++|++
T Consensus 13 ~~~v~c~~~~l~~iP~~l~--~~l~~L~l~~n~i------~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~ 84 (220)
T 2v9t_B 13 NNIVDCRGKGLTEIPTNLP--ETITEIRLEQNTI------KVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNS 84 (220)
T ss_dssp TTEEECTTSCCSSCCSSCC--TTCCEEECCSSCC------CEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCE
T ss_pred CCEEEcCCCCcCcCCCccC--cCCCEEECCCCcC------CCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCE
Confidence 3456666777776666543 6788888888875 2334445788889999999999866666888999999999
Q ss_pred eeecCCcccccccc-ccCCCCccEEEcCCCCCcccccccccccCccceeecCCCcccccCCccCCCCCCCcccCeeEecC
Q 002308 597 LNLSDQKIKKLPET-LCELYNLEKLDISGCSDLRELPKGIGKLINMKHLLNSGTRSLRYMPVGIGRLTGLRTLGEFHVSA 675 (938)
Q Consensus 597 L~L~~~~i~~lp~~-i~~l~~L~~L~l~~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~~ 675 (938)
|+|++|.|+.+|.. +..+++|++|++++|.+....|..|..+++|++|++++|.+....+..+..+++|+.|++.+|.+
T Consensus 85 L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~ 164 (220)
T 2v9t_B 85 LVLYGNKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPF 164 (220)
T ss_dssp EECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCE
T ss_pred EECCCCcCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCc
Confidence 99999999988875 57899999999999985555577788899999999999866655555688888888888888776
Q ss_pred CC
Q 002308 676 GG 677 (938)
Q Consensus 676 ~~ 677 (938)
..
T Consensus 165 ~c 166 (220)
T 2v9t_B 165 IC 166 (220)
T ss_dssp EC
T ss_pred CC
Confidence 44
No 109
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.49 E-value=4.7e-14 Score=141.04 Aligned_cols=170 Identities=22% Similarity=0.206 Sum_probs=90.2
Q ss_pred eEEEEccCCCcCcccccccCceeEEeccCCCCCCCCchhhHHHHHhccCCCeeEEecCCCCCCcccCccccccCCCCeee
Q 002308 519 HLMLIMGKESTFPISTCRAKRIRSLLIEWPEFGHSSLNGEILEELFRESTSLRALDFPSFYLPLEIPRNIEKLVHLRYLN 598 (938)
Q Consensus 519 ~l~l~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~n~~~~~lp~~~~~l~~L~~L~ 598 (938)
.+....+.+..+|..+ .++|+.|.+.+|.+. .+++..|..+++|++|++++|.+....+..+..+++|++|+
T Consensus 11 ~v~c~~~~l~~~p~~~--~~~l~~L~l~~n~l~------~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 82 (208)
T 2o6s_A 11 TVECYSQGRTSVPTGI--PAQTTYLDLETNSLK------SLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLN 82 (208)
T ss_dssp EEECCSSCCSSCCSCC--CTTCSEEECCSSCCC------CCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred EEEecCCCccCCCCCC--CCCCcEEEcCCCccC------cCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEE
Confidence 3334444444444332 245666666665542 12233355666666666666664333333455666666666
Q ss_pred ecCCcccccccc-ccCCCCccEEEcCCCCCcccccc-cccccCccceeecCCCcccccCCccCCCCCCCcccCeeEecCC
Q 002308 599 LSDQKIKKLPET-LCELYNLEKLDISGCSDLRELPK-GIGKLINMKHLLNSGTRSLRYMPVGIGRLTGLRTLGEFHVSAG 676 (938)
Q Consensus 599 L~~~~i~~lp~~-i~~l~~L~~L~l~~~~~l~~lp~-~i~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~~~ 676 (938)
|++|.++.+|.. +.++++|++|++++|. +..+|. .+..+++|++|++++|......+..+..+++|+.|++.+|.+.
T Consensus 83 Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~ 161 (208)
T 2o6s_A 83 LSTNQLQSLPNGVFDKLTQLKELALNTNQ-LQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWD 161 (208)
T ss_dssp CCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBC
T ss_pred CCCCcCCccCHhHhcCccCCCEEEcCCCc-CcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCee
Confidence 666666655543 4566666666666665 333333 3556666666666666444333333556666666666655433
Q ss_pred CCCCCCcccccccccccccCcceeecCcCCCC
Q 002308 677 GGVDGSKACRLESLKNLEHLQVCCIRRLGDVS 708 (938)
Q Consensus 677 ~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~ 708 (938)
. .+++|+.|++..|...+.++
T Consensus 162 ~-----------~~~~l~~L~~~~n~~~g~ip 182 (208)
T 2o6s_A 162 C-----------TCPGIRYLSEWINKHSGVVR 182 (208)
T ss_dssp C-----------CTTTTHHHHHHHHHCTTTBB
T ss_pred c-----------CCCCHHHHHHHHHhCCceee
Confidence 2 34455555555555554443
No 110
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.48 E-value=2.2e-14 Score=148.84 Aligned_cols=166 Identities=16% Similarity=0.110 Sum_probs=106.9
Q ss_pred CCCeeEEecCCCCCCcccCccccccCCCCeeeecCCccccccccccCCCCccEEEcCCCCCcccccccccccCccceeec
Q 002308 567 STSLRALDFPSFYLPLEIPRNIEKLVHLRYLNLSDQKIKKLPETLCELYNLEKLDISGCSDLRELPKGIGKLINMKHLLN 646 (938)
Q Consensus 567 ~~~Lr~L~L~~n~~~~~lp~~~~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~l~~~~~l~~lp~~i~~l~~L~~L~l 646 (938)
+..+..++++++. ...++ .+..+++|++|++++|.++.+| .+..+++|++|++++|. +..+|. +..+++|++|++
T Consensus 18 l~~l~~l~l~~~~-i~~~~-~~~~l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~L~~N~-i~~~~~-l~~l~~L~~L~L 92 (263)
T 1xeu_A 18 LANAVKQNLGKQS-VTDLV-SQKELSGVQNFNGDNSNIQSLA-GMQFFTNLKELHLSHNQ-ISDLSP-LKDLTKLEELSV 92 (263)
T ss_dssp HHHHHHHHHTCSC-TTSEE-CHHHHTTCSEEECTTSCCCCCT-TGGGCTTCCEEECCSSC-CCCCGG-GTTCSSCCEEEC
T ss_pred HHHHHHHHhcCCC-ccccc-chhhcCcCcEEECcCCCcccch-HHhhCCCCCEEECCCCc-cCCChh-hccCCCCCEEEC
Confidence 4456667777777 44455 5778888888888888888777 67788888888888887 555665 778888888888
Q ss_pred CCCcccccCCccCCCCCCCcccCeeEecCCCCCCCCcccccccccccccCcceeecCcCCCCChhhhhhhhccCCCcCCc
Q 002308 647 SGTRSLRYMPVGIGRLTGLRTLGEFHVSAGGGVDGSKACRLESLKNLEHLQVCCIRRLGDVSDVGEAKLLELDKKKYLSR 726 (938)
Q Consensus 647 ~~~~~~~~~p~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~~~~L~~ 726 (938)
++|... .+|.. .. ++|+.|++++|.+
T Consensus 93 ~~N~l~-~l~~~-~~-~~L~~L~L~~N~l--------------------------------------------------- 118 (263)
T 1xeu_A 93 NRNRLK-NLNGI-PS-ACLSRLFLDNNEL--------------------------------------------------- 118 (263)
T ss_dssp CSSCCS-CCTTC-CC-SSCCEEECCSSCC---------------------------------------------------
T ss_pred CCCccC-CcCcc-cc-CcccEEEccCCcc---------------------------------------------------
Confidence 877432 23221 11 3333333333322
Q ss_pred eEEEEecCCCCCCCCCccchHHHHhhCCCCCCCCeEEEeeecCCCCCCCchhccCCCCEEEEecCCCCCcCCCCCCCCcc
Q 002308 727 LRLEFDKKGGGGGRRKNEDDQLLLEALQPPLNLKELEIHYYGGNTVFPSWMASLTNLKSLDLCFCENCEQLPPLGKLPSL 806 (938)
Q Consensus 727 L~L~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~l~~l~~l~~L 806 (938)
.. ...+..+++|+.|++++|.+.+ +| .+..+++|+.|+|++|.+.+. +.+..+++|
T Consensus 119 --------~~-------------~~~l~~l~~L~~L~Ls~N~i~~-~~-~l~~l~~L~~L~L~~N~i~~~-~~l~~l~~L 174 (263)
T 1xeu_A 119 --------RD-------------TDSLIHLKNLEILSIRNNKLKS-IV-MLGFLSKLEVLDLHGNEITNT-GGLTRLKKV 174 (263)
T ss_dssp --------SB-------------SGGGTTCTTCCEEECTTSCCCB-CG-GGGGCTTCCEEECTTSCCCBC-TTSTTCCCC
T ss_pred --------CC-------------ChhhcCcccccEEECCCCcCCC-Ch-HHccCCCCCEEECCCCcCcch-HHhccCCCC
Confidence 11 0123344566666666666666 44 466777777777777765544 557777777
Q ss_pred ceeeccccc
Q 002308 807 EQLFISYMS 815 (938)
Q Consensus 807 ~~L~L~~~~ 815 (938)
+.|++++|.
T Consensus 175 ~~L~l~~N~ 183 (263)
T 1xeu_A 175 NWIDLTGQK 183 (263)
T ss_dssp CEEEEEEEE
T ss_pred CEEeCCCCc
Confidence 777777776
No 111
>3qfl_A MLA10; coiled-coil, (CC) domain, NLRS, nucleotide-binding domain, L rich repeat containing receptors, protein binding; 2.00A {Hordeum vulgare}
Probab=99.48 E-value=7.2e-14 Score=121.85 Aligned_cols=70 Identities=29% Similarity=0.409 Sum_probs=65.4
Q ss_pred hhhHHHHHHhhChHHHHHHHHHHHHHHHHHHHHHHhh--hcccHHHHHHHHHHHHhHhchhhHHHHHHHHHH
Q 002308 2 YKTLHEVKLVVGVEKEVKSLTSHLQAIQAVSDDAEEK--QVKDRAIRLWLGRLKYASYDIEDVLDEWITARH 71 (938)
Q Consensus 2 ~~~~~e~~~~~~~~~~~~~l~~~l~~~~~~l~~a~~~--~~~~~~~~~wl~~l~~~~~d~ed~ld~~~~~~~ 71 (938)
+.+.+|+.++.||++++++|+++|++|++||.+|+.+ +..+++++.|+++||++|||+||+||+|.++..
T Consensus 12 ~ll~~E~~l~~gv~~~i~~Lk~eL~~m~a~L~da~~~~~~~~d~~vk~W~~~vrdlaYD~ED~iD~f~~~~~ 83 (115)
T 3qfl_A 12 ELLTEEFKLHKGVKKNIEDLGKELESMNAALIKIGEVPREQLDSQDKLWADEVRELSYVIEDVVDKFLVQVD 83 (115)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3578999999999999999999999999999999987 567899999999999999999999999999874
No 112
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.48 E-value=1.1e-14 Score=173.43 Aligned_cols=158 Identities=20% Similarity=0.230 Sum_probs=101.3
Q ss_pred cccceEEEEccCCCcCcccccccCceeEEeccCCCCCCCCchhhHHHHHhccCCCeeEEecCCCCCCcccCccccccCCC
Q 002308 515 EKVRHLMLIMGKESTFPISTCRAKRIRSLLIEWPEFGHSSLNGEILEELFRESTSLRALDFPSFYLPLEIPRNIEKLVHL 594 (938)
Q Consensus 515 ~~~r~l~l~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~n~~~~~lp~~~~~l~~L 594 (938)
..++++.+..+.+...+..+.....|+.+.+.......+.+ .+++..|..++.|++|+|++|. +..+|..+..+++|
T Consensus 173 ~~~~~l~L~~n~~~~~~~~~l~~l~Ls~~~i~~~~~~~n~~--~~~~~~~~~l~~L~~L~Ls~n~-l~~l~~~~~~l~~L 249 (727)
T 4b8c_D 173 PLTPKIELFANGKDEANQALLQHKKLSQYSIDEDDDIENRM--VMPKDSKYDDQLWHALDLSNLQ-IFNISANIFKYDFL 249 (727)
T ss_dssp ---------------------------------------------------CCCCCCEEECTTSC-CSCCCGGGGGCCSC
T ss_pred CccceEEeeCCCCCcchhhHhhcCccCcccccCccccccce--ecChhhhccCCCCcEEECCCCC-CCCCChhhcCCCCC
Confidence 55788888888777655555555555555544433322222 2466778999999999999999 55888889999999
Q ss_pred CeeeecCCccccccccccCCCCccEEEcCCCCCcccccccccccCccceeecCCCcccccCCccCCCCCCCcccCeeEec
Q 002308 595 RYLNLSDQKIKKLPETLCELYNLEKLDISGCSDLRELPKGIGKLINMKHLLNSGTRSLRYMPVGIGRLTGLRTLGEFHVS 674 (938)
Q Consensus 595 ~~L~L~~~~i~~lp~~i~~l~~L~~L~l~~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~ 674 (938)
++|+|++|.|+.+|..|++|++|++|+|++|. +..+|..|+.|++|++|+|++|.+ ..+|..|+.+++|+.|++++|.
T Consensus 250 ~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~-l~~lp~~~~~l~~L~~L~L~~N~l-~~lp~~~~~l~~L~~L~L~~N~ 327 (727)
T 4b8c_D 250 TRLYLNGNSLTELPAEIKNLSNLRVLDLSHNR-LTSLPAELGSCFQLKYFYFFDNMV-TTLPWEFGNLCNLQFLGVEGNP 327 (727)
T ss_dssp SCCBCTTSCCSCCCGGGGGGTTCCEEECTTSC-CSSCCSSGGGGTTCSEEECCSSCC-CCCCSSTTSCTTCCCEECTTSC
T ss_pred CEEEeeCCcCcccChhhhCCCCCCEEeCcCCc-CCccChhhcCCCCCCEEECCCCCC-CccChhhhcCCCccEEeCCCCc
Confidence 99999999999999999999999999999999 558999999999999999999954 5889999999999999999998
Q ss_pred CCC
Q 002308 675 AGG 677 (938)
Q Consensus 675 ~~~ 677 (938)
+.+
T Consensus 328 l~~ 330 (727)
T 4b8c_D 328 LEK 330 (727)
T ss_dssp CCS
T ss_pred cCC
Confidence 875
No 113
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.48 E-value=9.7e-14 Score=137.28 Aligned_cols=150 Identities=16% Similarity=0.148 Sum_probs=108.3
Q ss_pred cccceEEEEccCCCcCcccccccCceeEEeccCCCCCCCCchhhHHHHHhccCCCeeEEecCCCCCCcccCccccccCCC
Q 002308 515 EKVRHLMLIMGKESTFPISTCRAKRIRSLLIEWPEFGHSSLNGEILEELFRESTSLRALDFPSFYLPLEIPRNIEKLVHL 594 (938)
Q Consensus 515 ~~~r~l~l~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~n~~~~~lp~~~~~l~~L 594 (938)
..++.+.+.++.+..++ .+..+++|++|.+++|.+.. ++ .+..+++|++|++++|.+....|..++.+++|
T Consensus 44 ~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~l~~n~~~~-------~~-~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L 114 (197)
T 4ezg_A 44 NSLTYITLANINVTDLT-GIEYAHNIKDLTINNIHATN-------YN-PISGLSNLERLRIMGKDVTSDKIPNLSGLTSL 114 (197)
T ss_dssp HTCCEEEEESSCCSCCT-TGGGCTTCSEEEEESCCCSC-------CG-GGTTCTTCCEEEEECTTCBGGGSCCCTTCTTC
T ss_pred CCccEEeccCCCccChH-HHhcCCCCCEEEccCCCCCc-------ch-hhhcCCCCCEEEeECCccCcccChhhcCCCCC
Confidence 56788888888887666 67778888888888775421 11 26678888888888888655567778888888
Q ss_pred CeeeecCCccc-cccccccCCCCccEEEcCCCCCcccccccccccCccceeecCCCcccccCCccCCCCCCCcccCeeEe
Q 002308 595 RYLNLSDQKIK-KLPETLCELYNLEKLDISGCSDLRELPKGIGKLINMKHLLNSGTRSLRYMPVGIGRLTGLRTLGEFHV 673 (938)
Q Consensus 595 ~~L~L~~~~i~-~lp~~i~~l~~L~~L~l~~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~ 673 (938)
++|++++|.++ ..|..++.+++|++|++++|..+..+| .+..+++|++|++++|... .++ .+..+++|+.|++++|
T Consensus 115 ~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~n~i~-~~~-~l~~l~~L~~L~l~~N 191 (197)
T 4ezg_A 115 TLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFDGVH-DYR-GIEDFPKLNQLYAFSQ 191 (197)
T ss_dssp CEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG-GGGGCSSCCEEECTTBCCC-CCT-TGGGCSSCCEEEECBC
T ss_pred CEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCccccH-hhcCCCCCCEEECCCCCCc-ChH-HhccCCCCCEEEeeCc
Confidence 88888888877 366778888888888888887566666 5778888888888887543 344 5677777777777776
Q ss_pred cCC
Q 002308 674 SAG 676 (938)
Q Consensus 674 ~~~ 676 (938)
.+.
T Consensus 192 ~i~ 194 (197)
T 4ezg_A 192 TIG 194 (197)
T ss_dssp ---
T ss_pred ccC
Confidence 643
No 114
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.48 E-value=2.8e-14 Score=163.16 Aligned_cols=183 Identities=15% Similarity=0.115 Sum_probs=144.3
Q ss_pred CCCCeeeecCCccccccccccCCCCccEEEcCCCCCcccccccccccCccceeecCCCcccccCCccCCCCCCCcccCee
Q 002308 592 VHLRYLNLSDQKIKKLPETLCELYNLEKLDISGCSDLRELPKGIGKLINMKHLLNSGTRSLRYMPVGIGRLTGLRTLGEF 671 (938)
Q Consensus 592 ~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~l~~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~ 671 (938)
.+|++|+|++|.++.+|..+. ++|++|++++|. +..+| ..+++|++|++++|.+.. +|. +.+ +|+.|+++
T Consensus 59 ~~L~~L~Ls~n~L~~lp~~l~--~~L~~L~Ls~N~-l~~ip---~~l~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~Ls 128 (571)
T 3cvr_A 59 NQFSELQLNRLNLSSLPDNLP--PQITVLEITQNA-LISLP---ELPASLEYLDACDNRLST-LPE-LPA--SLKHLDVD 128 (571)
T ss_dssp TTCSEEECCSSCCSCCCSCCC--TTCSEEECCSSC-CSCCC---CCCTTCCEEECCSSCCSC-CCC-CCT--TCCEEECC
T ss_pred CCccEEEeCCCCCCccCHhHc--CCCCEEECcCCC-Ccccc---cccCCCCEEEccCCCCCC-cch-hhc--CCCEEECC
Confidence 399999999999999998774 899999999998 66888 458999999999996554 777 665 99999999
Q ss_pred EecCCCCCCCCcccccccccccccCcceeecCcCCCCChhhhhhhhccCCCcCCceEEEEecCCCCCCCCCccchHHHHh
Q 002308 672 HVSAGGGVDGSKACRLESLKNLEHLQVCCIRRLGDVSDVGEAKLLELDKKKYLSRLRLEFDKKGGGGGRRKNEDDQLLLE 751 (938)
Q Consensus 672 ~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~ 751 (938)
+|.+.. ++ . .+++|+.|++++|.+.. ++. .+++|+.|+|++|.+.. ++.
T Consensus 129 ~N~l~~-lp----~---~l~~L~~L~Ls~N~l~~-lp~----------~l~~L~~L~Ls~N~L~~------------lp~ 177 (571)
T 3cvr_A 129 NNQLTM-LP----E---LPALLEYINADNNQLTM-LPE----------LPTSLEVLSVRNNQLTF------------LPE 177 (571)
T ss_dssp SSCCSC-CC----C---CCTTCCEEECCSSCCSC-CCC----------CCTTCCEEECCSSCCSC------------CCC
T ss_pred CCcCCC-CC----C---cCccccEEeCCCCccCc-CCC----------cCCCcCEEECCCCCCCC------------cch
Confidence 998876 22 1 57889999999888764 221 45789999999998875 333
Q ss_pred hCCCCCCCCeEEEeeecCCCCCCCchhccCCC-------CEEEEecCCCCCcCCC-CCCCCccceeecccccCceEeCcc
Q 002308 752 ALQPPLNLKELEIHYYGGNTVFPSWMASLTNL-------KSLDLCFCENCEQLPP-LGKLPSLEQLFISYMSSVKRVGDE 823 (938)
Q Consensus 752 ~l~~~~~L~~L~l~~~~~~~~~p~~~~~l~~L-------~~L~L~~~~~~~~l~~-l~~l~~L~~L~L~~~~~l~~~~~~ 823 (938)
+. ++|+.|+|++|.++. +|. +.. +| +.|+|++|.+.. +|. +..+++|+.|+|++|+....+|..
T Consensus 178 -l~--~~L~~L~Ls~N~L~~-lp~-~~~--~L~~~~~~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~L~~N~l~~~~p~~ 249 (571)
T 3cvr_A 178 -LP--ESLEALDVSTNLLES-LPA-VPV--RNHHSEETEIFFRCRENRITH-IPENILSLDPTCTIILEDNPLSSRIRES 249 (571)
T ss_dssp -CC--TTCCEEECCSSCCSS-CCC-CC----------CCEEEECCSSCCCC-CCGGGGGSCTTEEEECCSSSCCHHHHHH
T ss_pred -hh--CCCCEEECcCCCCCc-hhh-HHH--hhhcccccceEEecCCCccee-cCHHHhcCCCCCEEEeeCCcCCCcCHHH
Confidence 33 799999999999987 887 543 67 999999997765 554 778999999999999854544443
No 115
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.47 E-value=3.7e-14 Score=164.19 Aligned_cols=172 Identities=20% Similarity=0.224 Sum_probs=129.9
Q ss_pred cccccCceeEEeccCCCCCCCCchhhHHHHHhccCCCeeEEecCCCCCCcccCccccccCCCCeeeecCCcccccccccc
Q 002308 533 STCRAKRIRSLLIEWPEFGHSSLNGEILEELFRESTSLRALDFPSFYLPLEIPRNIEKLVHLRYLNLSDQKIKKLPETLC 612 (938)
Q Consensus 533 ~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~n~~~~~lp~~~~~l~~L~~L~L~~~~i~~lp~~i~ 612 (938)
....+++|+.|.+.+|.+.. + + .+..+++|+.|+|++|.+. .+|. ++.|++|++|+|++|.+..+| .+.
T Consensus 38 ~~~~L~~L~~L~l~~n~i~~------l-~-~l~~l~~L~~L~Ls~N~l~-~~~~-l~~l~~L~~L~Ls~N~l~~l~-~l~ 106 (605)
T 1m9s_A 38 TQNELNSIDQIIANNSDIKS------V-Q-GIQYLPNVTKLFLNGNKLT-DIKP-LTNLKNLGWLFLDENKIKDLS-SLK 106 (605)
T ss_dssp CHHHHTTCCCCBCTTCCCCC------C-T-TGGGCTTCCEEECTTSCCC-CCGG-GGGCTTCCEEECCSSCCCCCT-TST
T ss_pred chhcCCCCCEEECcCCCCCC------C-h-HHccCCCCCEEEeeCCCCC-CChh-hccCCCCCEEECcCCCCCCCh-hhc
Confidence 35688999999999887632 1 1 2788999999999999954 4554 899999999999999999887 699
Q ss_pred CCCCccEEEcCCCCCcccccccccccCccceeecCCCcccccCCccCCCCCCCcccCeeEecCCCCCCCCcccccccccc
Q 002308 613 ELYNLEKLDISGCSDLRELPKGIGKLINMKHLLNSGTRSLRYMPVGIGRLTGLRTLGEFHVSAGGGVDGSKACRLESLKN 692 (938)
Q Consensus 613 ~l~~L~~L~l~~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~ 692 (938)
.+++|+.|+|++|. +..+| .+..+++|+.|+|++|.+.. + ..++.+++|+.|++++|.+.... .+..+++
T Consensus 107 ~l~~L~~L~Ls~N~-l~~l~-~l~~l~~L~~L~Ls~N~l~~-l-~~l~~l~~L~~L~Ls~N~l~~~~------~l~~l~~ 176 (605)
T 1m9s_A 107 DLKKLKSLSLEHNG-ISDIN-GLVHLPQLESLYLGNNKITD-I-TVLSRLTKLDTLSLEDNQISDIV------PLAGLTK 176 (605)
T ss_dssp TCTTCCEEECTTSC-CCCCG-GGGGCTTCSEEECCSSCCCC-C-GGGGSCTTCSEEECCSSCCCCCG------GGTTCTT
T ss_pred cCCCCCEEEecCCC-CCCCc-cccCCCccCEEECCCCccCC-c-hhhcccCCCCEEECcCCcCCCch------hhccCCC
Confidence 99999999999998 55565 58999999999999996544 3 56888999999999888776521 1556666
Q ss_pred cccCcceeecCcCCCCChhhhhhhhccCCCcCCceEEEEecC
Q 002308 693 LEHLQVCCIRRLGDVSDVGEAKLLELDKKKYLSRLRLEFDKK 734 (938)
Q Consensus 693 L~~L~l~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~ 734 (938)
|+.|++++|.+... ..+..+++|+.|+|++|.+
T Consensus 177 L~~L~Ls~N~i~~l---------~~l~~l~~L~~L~L~~N~l 209 (605)
T 1m9s_A 177 LQNLYLSKNHISDL---------RALAGLKNLDVLELFSQEC 209 (605)
T ss_dssp CCEEECCSSCCCBC---------GGGTTCTTCSEEECCSEEE
T ss_pred CCEEECcCCCCCCC---------hHHccCCCCCEEEccCCcC
Confidence 66666666654321 1244455555555555544
No 116
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.47 E-value=3.9e-14 Score=140.15 Aligned_cols=131 Identities=14% Similarity=0.138 Sum_probs=82.0
Q ss_pred cccCceeEEeccCCCCCCCCchhhHHHHHhccCCCeeEEecCCCCCCcccCccccccCCCCeeeecCCcccc-ccccccC
Q 002308 535 CRAKRIRSLLIEWPEFGHSSLNGEILEELFRESTSLRALDFPSFYLPLEIPRNIEKLVHLRYLNLSDQKIKK-LPETLCE 613 (938)
Q Consensus 535 ~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~n~~~~~lp~~~~~l~~L~~L~L~~~~i~~-lp~~i~~ 613 (938)
..+++|+.|.+++|.+. .++ .+..+++|++|++++|. ...+ ..++.+++|++|++++|.++. .|..++.
T Consensus 41 ~~l~~L~~L~l~~n~i~------~l~--~l~~l~~L~~L~l~~n~-~~~~-~~l~~l~~L~~L~l~~n~l~~~~~~~l~~ 110 (197)
T 4ezg_A 41 AQMNSLTYITLANINVT------DLT--GIEYAHNIKDLTINNIH-ATNY-NPISGLSNLERLRIMGKDVTSDKIPNLSG 110 (197)
T ss_dssp HHHHTCCEEEEESSCCS------CCT--TGGGCTTCSEEEEESCC-CSCC-GGGTTCTTCCEEEEECTTCBGGGSCCCTT
T ss_pred hhcCCccEEeccCCCcc------ChH--HHhcCCCCCEEEccCCC-CCcc-hhhhcCCCCCEEEeECCccCcccChhhcC
Confidence 55667777777776652 111 15666777777777775 3333 356667777777777777663 5666777
Q ss_pred CCCccEEEcCCCCCcccccccccccCccceeecCCCcccccCCccCCCCCCCcccCeeEecCC
Q 002308 614 LYNLEKLDISGCSDLRELPKGIGKLINMKHLLNSGTRSLRYMPVGIGRLTGLRTLGEFHVSAG 676 (938)
Q Consensus 614 l~~L~~L~l~~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~~~ 676 (938)
+++|++|++++|......|..+..+++|++|++++|.....+| .+..+++|+.|++++|.+.
T Consensus 111 l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~n~i~ 172 (197)
T 4ezg_A 111 LTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFDGVH 172 (197)
T ss_dssp CTTCCEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG-GGGGCSSCCEEECTTBCCC
T ss_pred CCCCCEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCccccH-hhcCCCCCCEEECCCCCCc
Confidence 7777777777776555566667777777777777765344444 4555666666665555443
No 117
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.47 E-value=9.6e-14 Score=139.73 Aligned_cols=156 Identities=13% Similarity=0.068 Sum_probs=115.8
Q ss_pred cccceEEEEccCCCcCcccccccCceeEEeccCCCCCCCCchhhHHHHHhccCCCeeEEecCCCCCCcccCccccccCCC
Q 002308 515 EKVRHLMLIMGKESTFPISTCRAKRIRSLLIEWPEFGHSSLNGEILEELFRESTSLRALDFPSFYLPLEIPRNIEKLVHL 594 (938)
Q Consensus 515 ~~~r~l~l~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~n~~~~~lp~~~~~l~~L 594 (938)
..-+.++++++.++.+|..+ .+.++.|.+++|.+..- .+...|..+++|++|+|++|.+....+..|+.+++|
T Consensus 11 C~~~~l~~s~n~l~~iP~~~--~~~~~~L~L~~N~l~~~-----~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L 83 (220)
T 2v70_A 11 CEGTTVDCSNQKLNKIPEHI--PQYTAELRLNNNEFTVL-----EATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGV 83 (220)
T ss_dssp EETTEEECCSSCCSSCCSCC--CTTCSEEECCSSCCCEE-----CCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTC
T ss_pred ECCCEeEeCCCCcccCccCC--CCCCCEEEcCCCcCCcc-----CchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCC
Confidence 33457777778777776654 34567888888775211 022346788888888888888555555578888888
Q ss_pred CeeeecCCccccccc-cccCCCCccEEEcCCCCCcccccccccccCccceeecCCCcccccCCccCCCCCCCcccCeeEe
Q 002308 595 RYLNLSDQKIKKLPE-TLCELYNLEKLDISGCSDLRELPKGIGKLINMKHLLNSGTRSLRYMPVGIGRLTGLRTLGEFHV 673 (938)
Q Consensus 595 ~~L~L~~~~i~~lp~-~i~~l~~L~~L~l~~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~ 673 (938)
++|+|++|.++.+|. .+..+++|++|++++|.+....|..+..+++|++|++++|.+....|..+..+++|+.|++.+|
T Consensus 84 ~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N 163 (220)
T 2v70_A 84 NEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLAN 163 (220)
T ss_dssp CEEECCSSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSC
T ss_pred CEEECCCCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCc
Confidence 888888888887765 4788888888888888855555777888888888888888766666777888888888888877
Q ss_pred cCCC
Q 002308 674 SAGG 677 (938)
Q Consensus 674 ~~~~ 677 (938)
.+..
T Consensus 164 ~l~c 167 (220)
T 2v70_A 164 PFNC 167 (220)
T ss_dssp CEEC
T ss_pred CCcC
Confidence 7654
No 118
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.46 E-value=1.5e-13 Score=137.32 Aligned_cols=165 Identities=19% Similarity=0.257 Sum_probs=132.9
Q ss_pred cccccCCCCcccccceEEEEccCCCcCcc-cccccCceeEEeccCCCCCCCCchhhHHHHHhccCCCeeEEecCCCCCCc
Q 002308 504 SEELNVPNSLDEKVRHLMLIMGKESTFPI-STCRAKRIRSLLIEWPEFGHSSLNGEILEELFRESTSLRALDFPSFYLPL 582 (938)
Q Consensus 504 ~~~~~~~~~~~~~~r~l~l~~~~~~~~~~-~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~n~~~~ 582 (938)
.....+|...+..++.+++.++.+...+. .+..+++|+.|.+.+|.+. .+++..|..+++|++|+|++|.+..
T Consensus 17 ~~l~~~p~~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~------~~~~~~~~~l~~L~~L~Ls~n~l~~ 90 (208)
T 2o6s_A 17 QGRTSVPTGIPAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQ------SLPNGVFNKLTSLTYLNLSTNQLQS 90 (208)
T ss_dssp SCCSSCCSCCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCC------CCCTTTTTTCTTCCEEECCSSCCCC
T ss_pred CCccCCCCCCCCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccC------ccChhhcCCCCCcCEEECCCCcCCc
Confidence 33344556667899999999999987655 4678999999999999863 3344557889999999999999655
Q ss_pred ccCccccccCCCCeeeecCCcccccccc-ccCCCCccEEEcCCCCCcccccc-cccccCccceeecCCCcccccCCccCC
Q 002308 583 EIPRNIEKLVHLRYLNLSDQKIKKLPET-LCELYNLEKLDISGCSDLRELPK-GIGKLINMKHLLNSGTRSLRYMPVGIG 660 (938)
Q Consensus 583 ~lp~~~~~l~~L~~L~L~~~~i~~lp~~-i~~l~~L~~L~l~~~~~l~~lp~-~i~~l~~L~~L~l~~~~~~~~~p~~l~ 660 (938)
..+..++.+++|++|+|++|.++.+|.. +.++++|++|++++|. +..+|. .+..+++|++|++++|.. .+
T Consensus 91 ~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~-l~~~~~~~~~~l~~L~~L~l~~N~~-------~~ 162 (208)
T 2o6s_A 91 LPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQ-LKSVPDGVFDRLTSLQYIWLHDNPW-------DC 162 (208)
T ss_dssp CCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CSCCCTTTTTTCTTCCEEECCSCCB-------CC
T ss_pred cCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCc-cceeCHHHhccCCCccEEEecCCCe-------ec
Confidence 4455679999999999999999988775 7899999999999998 445554 478899999999999943 35
Q ss_pred CCCCCcccCeeEecCCCCCCCC
Q 002308 661 RLTGLRTLGEFHVSAGGGVDGS 682 (938)
Q Consensus 661 ~l~~L~~L~l~~~~~~~~~~~~ 682 (938)
.+++|+.|+++.|.+.+.++..
T Consensus 163 ~~~~l~~L~~~~n~~~g~ip~~ 184 (208)
T 2o6s_A 163 TCPGIRYLSEWINKHSGVVRNS 184 (208)
T ss_dssp CTTTTHHHHHHHHHCTTTBBCT
T ss_pred CCCCHHHHHHHHHhCCceeecc
Confidence 5678999999988887755543
No 119
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.45 E-value=1.4e-13 Score=139.58 Aligned_cols=152 Identities=19% Similarity=0.205 Sum_probs=106.1
Q ss_pred cceEEEEccCCCcCcccccccCceeEEeccCCCCCCCCchhhHHHHHhccCCCeeEEecCCCCCCcccCccccccCCCCe
Q 002308 517 VRHLMLIMGKESTFPISTCRAKRIRSLLIEWPEFGHSSLNGEILEELFRESTSLRALDFPSFYLPLEIPRNIEKLVHLRY 596 (938)
Q Consensus 517 ~r~l~l~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~n~~~~~lp~~~~~l~~L~~ 596 (938)
...++..++.+..+|..+. ++|+.|.+++|.+. .+.+..|..+++|++|+|++|.+....+..|..+++|++
T Consensus 21 ~~~v~c~~~~l~~ip~~~~--~~L~~L~Ls~n~i~------~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~ 92 (229)
T 3e6j_A 21 GTTVDCRSKRHASVPAGIP--TNAQILYLHDNQIT------KLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTV 92 (229)
T ss_dssp TTEEECTTSCCSSCCSCCC--TTCSEEECCSSCCC------CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred CCEeEccCCCcCccCCCCC--CCCCEEEcCCCccC------ccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCE
Confidence 3455666666666665443 77888888777652 223344677888888888888843333345678888888
Q ss_pred eeecCCcccccccc-ccCCCCccEEEcCCCCCcccccccccccCccceeecCCCcccccCCccCCCCCCCcccCeeEecC
Q 002308 597 LNLSDQKIKKLPET-LCELYNLEKLDISGCSDLRELPKGIGKLINMKHLLNSGTRSLRYMPVGIGRLTGLRTLGEFHVSA 675 (938)
Q Consensus 597 L~L~~~~i~~lp~~-i~~l~~L~~L~l~~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~~ 675 (938)
|+|++|.++.+|.. +..+++|++|++++|. +..+|..+..+++|++|++++|.+....+..+..+++|+.|++.+|.+
T Consensus 93 L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~-l~~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~ 171 (229)
T 3e6j_A 93 LDLGTNQLTVLPSAVFDRLVHLKELFMCCNK-LTELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPW 171 (229)
T ss_dssp EECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCSCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCB
T ss_pred EECCCCcCCccChhHhCcchhhCeEeccCCc-ccccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCc
Confidence 88888888877654 5778888888888887 567788888888888888888855443334577777888887777765
Q ss_pred CC
Q 002308 676 GG 677 (938)
Q Consensus 676 ~~ 677 (938)
..
T Consensus 172 ~c 173 (229)
T 3e6j_A 172 DC 173 (229)
T ss_dssp CT
T ss_pred cC
Confidence 54
No 120
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.42 E-value=2.6e-16 Score=181.25 Aligned_cols=188 Identities=18% Similarity=0.075 Sum_probs=117.8
Q ss_pred cccCCCCeeeecCCccccccccccCCCCccEEEcCCCC-------------CcccccccccccCccceee-cCCCccccc
Q 002308 589 EKLVHLRYLNLSDQKIKKLPETLCELYNLEKLDISGCS-------------DLRELPKGIGKLINMKHLL-NSGTRSLRY 654 (938)
Q Consensus 589 ~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~l~~~~-------------~l~~lp~~i~~l~~L~~L~-l~~~~~~~~ 654 (938)
..+++|+.|+|++|.++.+|..|+++++|+.|++++|. .....|..++.+++|+.|+ ++.+.
T Consensus 346 ~~~~~L~~L~Ls~n~L~~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~---- 421 (567)
T 1dce_A 346 ATDEQLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAY---- 421 (567)
T ss_dssp STTTTSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHH----
T ss_pred ccCccceeccCChhhHHhhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcc----
Confidence 45677888888888888888888888888888876654 2334455555566666655 33221
Q ss_pred CCccCCCCCCCcccCeeEecCCCCCCCCcccccccccccccCcceeecCcCCCCChhhhhhhhccCCCcCCceEEEEecC
Q 002308 655 MPVGIGRLTGLRTLGEFHVSAGGGVDGSKACRLESLKNLEHLQVCCIRRLGDVSDVGEAKLLELDKKKYLSRLRLEFDKK 734 (938)
Q Consensus 655 ~p~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~ 734 (938)
+.+|+.+.+..|.+.. + ....|+.|++++|.+... + .+..+++|+.|+|++|.+
T Consensus 422 -------~~~L~~l~l~~n~i~~---------l-~~~~L~~L~Ls~n~l~~l-p--------~~~~l~~L~~L~Ls~N~l 475 (567)
T 1dce_A 422 -------LDDLRSKFLLENSVLK---------M-EYADVRVLHLAHKDLTVL-C--------HLEQLLLVTHLDLSHNRL 475 (567)
T ss_dssp -------HHHHHHHHHHHHHHHH---------H-HHTTCSEEECTTSCCSSC-C--------CGGGGTTCCEEECCSSCC
T ss_pred -------cchhhhhhhhcccccc---------c-CccCceEEEecCCCCCCC-c--------CccccccCcEeecCcccc
Confidence 1122222222222111 0 011355566666554431 2 245566777777777776
Q ss_pred CCCCCCCCccchHHHHhhCCCCCCCCeEEEeeecCCCCCCCchhccCCCCEEEEecCCCCCcC-CC-CCCCCccceeecc
Q 002308 735 GGGGGRRKNEDDQLLLEALQPPLNLKELEIHYYGGNTVFPSWMASLTNLKSLDLCFCENCEQL-PP-LGKLPSLEQLFIS 812 (938)
Q Consensus 735 ~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~l-~~-l~~l~~L~~L~L~ 812 (938)
.. ++..+..+++|+.|+|++|.+++ +| .++.+++|+.|+|++|.+.... |. ++.+++|+.|+|+
T Consensus 476 ~~------------lp~~~~~l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~ 541 (567)
T 1dce_A 476 RA------------LPPALAALRCLEVLQASDNALEN-VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQ 541 (567)
T ss_dssp CC------------CCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECT
T ss_pred cc------------cchhhhcCCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEec
Confidence 54 45566777888888888888887 77 6778888888888888776653 44 7888888888888
Q ss_pred cccCceEeC
Q 002308 813 YMSSVKRVG 821 (938)
Q Consensus 813 ~~~~l~~~~ 821 (938)
+|+ +..+|
T Consensus 542 ~N~-l~~~~ 549 (567)
T 1dce_A 542 GNS-LCQEE 549 (567)
T ss_dssp TSG-GGGSS
T ss_pred CCc-CCCCc
Confidence 887 44443
No 121
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.42 E-value=2.9e-11 Score=133.58 Aligned_cols=296 Identities=13% Similarity=0.015 Sum_probs=179.2
Q ss_pred CCceecchhhHHHHHHHHhccCcccCCCeEEEEEEccCCChHHHHHHHHhhhhhhhc----c--cCeEEEEEeCCCC-CH
Q 002308 149 EEEICGRVGERNALLSMLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNHVEVKR----E--FDKTLWVCVSETF-DE 221 (938)
Q Consensus 149 ~~~~vGr~~~~~~l~~~l~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~----~--f~~~~wv~~~~~~-~~ 221 (938)
+..++||+.+++++..++..... +...+.+.|+|++|+|||++|+.+++...... . ...++|+++.... +.
T Consensus 19 p~~l~gr~~~~~~l~~~l~~~~~--~~~~~~vll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 96 (384)
T 2qby_B 19 FKEIPFREDILRDAAIAIRYFVK--NEVKFSNLFLGLTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQAYVNCREVGGTP 96 (384)
T ss_dssp CSSCTTCHHHHHHHHHHHHHHHT--TCCCCEEEEEECTTSSHHHHHHHHHHHHHHHHHHSSSSTTCEEEEEEHHHHCSCH
T ss_pred CCCCCChHHHHHHHHHHHHHHHc--CCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhhhcCCCCceEEEEECccCCCCH
Confidence 36799999999999988865321 23456899999999999999999998532211 1 3456788877766 88
Q ss_pred HHHHHHHHHHhcCCCCC--CCcHHHHHHHHHHHhcCceEEEEEecCCCCCccChhHH-HHhhhCCCCCcEEEEEcCChhh
Q 002308 222 FRIAKAMLEALTGSTSN--LNALQSLLISIDESIAGKRFLLVLDDVWDGDYIKWEPF-YRCLKKGLHGSKILITTRKESI 298 (938)
Q Consensus 222 ~~~~~~i~~~l~~~~~~--~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~~~~~~~l-~~~l~~~~~gs~ilvTtr~~~v 298 (938)
..++..++.++.+.... .....+....+...+..++.+|||||++......+... ...+.....+..||+||+....
T Consensus 97 ~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~vlilDEi~~l~~~~~~~~~l~~l~~~~~~~~iI~~t~~~~~ 176 (384)
T 2qby_B 97 QAVLSSLAGKLTGFSVPKHGINLGEYIDKIKNGTRNIRAIIYLDEVDTLVKRRGGDIVLYQLLRSDANISVIMISNDINV 176 (384)
T ss_dssp HHHHHHHHHHHHCSCCCSSSSCTHHHHHHHHHHHSSSCEEEEEETTHHHHHSTTSHHHHHHHHTSSSCEEEEEECSSTTT
T ss_pred HHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHhccCCCEEEEECHHHhccCCCCceeHHHHhcCCcceEEEEEECCCch
Confidence 88999999888433221 22345566677777777666999999976432222222 3333332267889999987532
Q ss_pred h----hhh--cCCceEeCCCCChHHHHHHHHHhhcC-CCCCchhhHHHHHHHHHHHhcC---CChhH-HHHHHhh--hcC
Q 002308 299 V----SMM--RSTDIISIEELAEEECWVLFKRLAFF-GRSTEECEKLEQIGQRIARKCK---GLPLA-AKTMGSL--MSS 365 (938)
Q Consensus 299 ~----~~~--~~~~~~~l~~L~~~~~~~lf~~~~~~-~~~~~~~~~~~~~~~~i~~~~~---g~Pla-i~~~~~~--l~~ 365 (938)
. ... .-...+.+.+++.++..+++..++.. ......++ +..+.+++.++ |.|.. +..+-.. +..
T Consensus 177 ~~~l~~~l~sr~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~---~~~~~i~~~~~~~~G~~r~a~~~l~~a~~~a~ 253 (384)
T 2qby_B 177 RDYMEPRVLSSLGPSVIFKPYDAEQLKFILSKYAEYGLIKGTYDD---EILSYIAAISAKEHGDARKAVNLLFRAAQLAS 253 (384)
T ss_dssp TTTSCHHHHHTCCCEEEECCCCHHHHHHHHHHHHHHTSCTTSCCS---HHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTT
T ss_pred HhhhCHHHHhcCCCeEEECCCCHHHHHHHHHHHHHhhcccCCcCH---HHHHHHHHHHHhccCCHHHHHHHHHHHHHHhc
Confidence 1 111 11238999999999999999987531 11111111 23556777777 88873 3333222 221
Q ss_pred ---CCCHHHHHHHHhccccccccccccchhhHHhhhccCChhHHHHHhHhccCCCC-cccChHHHHHHHHHcCCCcchhc
Q 002308 366 ---KKTEEEWKRILNSDLWKVEEIEKGVLTPLWLSYNDLPSRVKRCFSYCAVFPKD-YNIKKDELITLWMAQGYLSAEAA 441 (938)
Q Consensus 366 ---~~~~~~w~~~~~~~~~~~~~~~~~~~~~l~~sy~~L~~~~k~~f~~~~~fp~~-~~i~~~~li~~w~a~g~i~~~~~ 441 (938)
.-+.+.+...+... ....+..++..|+.+.+..+..++. ... ..+. +......-..| +.
T Consensus 254 ~~~~i~~~~v~~~~~~~----------~~~~~~~~~~~l~~~~~~~l~al~~-~~~~~~~~-~~~~~~~~~~g-~~---- 316 (384)
T 2qby_B 254 GGGIIRKEHVDKAIVDY----------EQERLIEAVKALPFHYKLALRSLIE-SEDVMSAH-KMYTDLCNKFK-QK---- 316 (384)
T ss_dssp SSSCCCHHHHHHHHHHH----------HHHHHHHHHHSSCHHHHHHHHHHHT-CCBHHHHH-HHHHHHHHHTT-CC----
T ss_pred CCCccCHHHHHHHHHHH----------hcchHHHHHHcCCHHHHHHHHHHHH-hcccChHH-HHHHHHHHHcC-CC----
Confidence 12556666555431 1134566778899888887777776 211 1110 11111111112 11
Q ss_pred cccchHHHHHHHHHHHHHhccccccccc
Q 002308 442 EQDEEMETIGEEYFGILASRSFFQEFKK 469 (938)
Q Consensus 442 ~~~~~~~~~~~~~~~~L~~~~ll~~~~~ 469 (938)
.........++..|...+++.....
T Consensus 317 ---~~~~~~~~~~l~~L~~~gli~~~~~ 341 (384)
T 2qby_B 317 ---PLSYRRFSDIISELDMFGIVKIRII 341 (384)
T ss_dssp ---CCCHHHHHHHHHHHHHTTSEEEEEE
T ss_pred ---CCCHHHHHHHHHHHHhCCCEEEEec
Confidence 1122345677899999999987543
No 122
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.42 E-value=4e-15 Score=171.33 Aligned_cols=59 Identities=19% Similarity=0.095 Sum_probs=38.0
Q ss_pred CCCCCCCCeEEEeeecCCCCC-CCchhccCCCCEEEEecCCCCCcCCCC----CCCCccceeec
Q 002308 753 LQPPLNLKELEIHYYGGNTVF-PSWMASLTNLKSLDLCFCENCEQLPPL----GKLPSLEQLFI 811 (938)
Q Consensus 753 l~~~~~L~~L~l~~~~~~~~~-p~~~~~l~~L~~L~L~~~~~~~~l~~l----~~l~~L~~L~L 811 (938)
+..+++|+.|+|++|.+++.. |..++.+++|+.|+|++|.+....|.. ..+|+|+.|++
T Consensus 504 l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~l 567 (567)
T 1dce_A 504 VANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSILT 567 (567)
T ss_dssp GTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEEC
T ss_pred cCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCccCC
Confidence 344556666777777766633 777777778888888877766554432 23677777653
No 123
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=99.42 E-value=4.7e-11 Score=132.11 Aligned_cols=297 Identities=13% Similarity=0.043 Sum_probs=179.3
Q ss_pred CCCceecchhhHHHHHHHHhccCcccCCCeEEEEEEccCCChHHHHHHHHhhhhhhhc---c-cCeEEEEEeCCCCCHHH
Q 002308 148 DEEEICGRVGERNALLSMLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNHVEVKR---E-FDKTLWVCVSETFDEFR 223 (938)
Q Consensus 148 ~~~~~vGr~~~~~~l~~~l~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~---~-f~~~~wv~~~~~~~~~~ 223 (938)
.++.++||+.+++++..++...-. ....+.+.|+|++|+||||+|+.+++...... . -...+|+++....+...
T Consensus 17 ~p~~~~gr~~~~~~l~~~l~~~~~--~~~~~~vll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 94 (387)
T 2v1u_A 17 VPDVLPHREAELRRLAEVLAPALR--GEKPSNALLYGLTGTGKTAVARLVLRRLEARASSLGVLVKPIYVNARHRETPYR 94 (387)
T ss_dssp CCSCCTTCHHHHHHHHHTTGGGTS--SCCCCCEEECBCTTSSHHHHHHHHHHHHHHHHHHHTCCEEEEEEETTTSCSHHH
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHc--CCCCCcEEEECCCCCCHHHHHHHHHHHHHHHHhccCCCeEEEEEECCcCCCHHH
Confidence 347899999999999998864321 23456899999999999999999998532110 1 13467888888888899
Q ss_pred HHHHHHHHhcCCCCC-CCcHHHHHHHHHHHhc--CceEEEEEecCCCCCcc--ChhHHHHhhhCC-----CCCcEEEEEc
Q 002308 224 IAKAMLEALTGSTSN-LNALQSLLISIDESIA--GKRFLLVLDDVWDGDYI--KWEPFYRCLKKG-----LHGSKILITT 293 (938)
Q Consensus 224 ~~~~i~~~l~~~~~~-~~~~~~~~~~l~~~l~--~~~~LlVlDdv~~~~~~--~~~~l~~~l~~~-----~~gs~ilvTt 293 (938)
++..++.+++..... .....+....+.+.+. +++.+||||+++..... ..+.+...+... ..+..+|.||
T Consensus 95 ~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDEi~~l~~~~~~~~~l~~l~~~~~~~~~~~~~~~I~~t 174 (387)
T 2v1u_A 95 VASAIAEAVGVRVPFTGLSVGEVYERLVKRLSRLRGIYIIVLDEIDFLPKRPGGQDLLYRITRINQELGDRVWVSLVGIT 174 (387)
T ss_dssp HHHHHHHHHSCCCCSSCCCHHHHHHHHHHHHTTSCSEEEEEEETTTHHHHSTTHHHHHHHHHHGGGCC-----CEEEEEC
T ss_pred HHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEccHhhhcccCCCChHHHhHhhchhhcCCCceEEEEEEE
Confidence 999999998754322 2234555566666663 56899999999764322 223333333321 3456778888
Q ss_pred CChhhhh----hh-cC--CceEeCCCCChHHHHHHHHHhhcC--CCCCchhhHHHHHHHHHHHhcC---CChhHHHHHH-
Q 002308 294 RKESIVS----MM-RS--TDIISIEELAEEECWVLFKRLAFF--GRSTEECEKLEQIGQRIARKCK---GLPLAAKTMG- 360 (938)
Q Consensus 294 r~~~v~~----~~-~~--~~~~~l~~L~~~~~~~lf~~~~~~--~~~~~~~~~~~~~~~~i~~~~~---g~Plai~~~~- 360 (938)
+...... .. .. ...+.+.+++.++..+++...+.. ...... + +..+.+++.++ |.|..+..+.
T Consensus 175 ~~~~~~~~l~~~l~~r~~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~-~---~~~~~l~~~~~~~~G~~r~~~~~l~ 250 (387)
T 2v1u_A 175 NSLGFVENLEPRVKSSLGEVELVFPPYTAPQLRDILETRAEEAFNPGVLD-P---DVVPLCAALAAREHGDARRALDLLR 250 (387)
T ss_dssp SCSTTSSSSCHHHHTTTTSEECCBCCCCHHHHHHHHHHHHHHHBCTTTBC-S---SHHHHHHHHHHSSSCCHHHHHHHHH
T ss_pred CCCchHhhhCHHHHhcCCCeEEeeCCCCHHHHHHHHHHHHHhhccCCCCC-H---HHHHHHHHHHHHhccCHHHHHHHHH
Confidence 7653211 11 11 147899999999999999987531 111111 1 23567777777 9994333222
Q ss_pred hhh---c--C--CCCHHHHHHHHhccccccccccccchhhHHhhhccCChhHHHHHhHhc-cCCCCcccChHHHHHHHH-
Q 002308 361 SLM---S--S--KKTEEEWKRILNSDLWKVEEIEKGVLTPLWLSYNDLPSRVKRCFSYCA-VFPKDYNIKKDELITLWM- 431 (938)
Q Consensus 361 ~~l---~--~--~~~~~~w~~~~~~~~~~~~~~~~~~~~~l~~sy~~L~~~~k~~f~~~~-~fp~~~~i~~~~li~~w~- 431 (938)
.+. . . .-+.+.+...+... ....+.-++..++.+.+..+..++ ++.....+....+.+...
T Consensus 251 ~a~~~a~~~~~~~i~~~~v~~a~~~~----------~~~~~~~~~~~l~~~~~~~l~a~~~~~~~~~~~~~~~~~~~~~~ 320 (387)
T 2v1u_A 251 VAGEIAERRREERVRREHVYSARAEI----------ERDRVSEVVRTLPLHAKLVLLSIMMLEDGGRPASTGEIYERYKE 320 (387)
T ss_dssp HHHHHHHHTTCSCBCHHHHHHHHHHH----------HHHHHHHHHHSSCHHHHHHHHHHHHHSSSSCCEEHHHHHHHHHH
T ss_pred HHHHHHHHcCCCCcCHHHHHHHHHHH----------hhchHHHHHHcCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHH
Confidence 211 1 1 11445555444321 112355577889998888777776 443222444444433321
Q ss_pred ---HcCCCcchhccccchHHHHHHHHHHHHHhcccccccc
Q 002308 432 ---AQGYLSAEAAEQDEEMETIGEEYFGILASRSFFQEFK 468 (938)
Q Consensus 432 ---a~g~i~~~~~~~~~~~~~~~~~~~~~L~~~~ll~~~~ 468 (938)
..| +.. ........++..|...+++....
T Consensus 321 ~~~~~~-~~~-------~~~~~~~~~l~~L~~~gli~~~~ 352 (387)
T 2v1u_A 321 LTSTLG-LEH-------VTLRRVSGIISELDMLGIVKSRV 352 (387)
T ss_dssp HHHHTT-CCC-------CCHHHHHHHHHHHHHTTSEEEEE
T ss_pred HHHhcC-CCC-------CCHHHHHHHHHHHHhCCCeEEEe
Confidence 122 111 12244567899999999998754
No 124
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=99.41 E-value=4e-11 Score=132.77 Aligned_cols=299 Identities=13% Similarity=0.052 Sum_probs=183.0
Q ss_pred CCceecchhhHHHHHHHHhccCcccCCCeEEEEEEccCCChHHHHHHHHhhhhhhhccc-CeEEEEEeCCCCCHHHHHHH
Q 002308 149 EEEICGRVGERNALLSMLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNHVEVKREF-DKTLWVCVSETFDEFRIAKA 227 (938)
Q Consensus 149 ~~~~vGr~~~~~~l~~~l~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f-~~~~wv~~~~~~~~~~~~~~ 227 (938)
++.++||+.+++++..++........+..+.+.|+|++|+||||+|+.+++. ..... ..++|++++...+...++..
T Consensus 16 p~~l~gr~~~~~~l~~~l~~~~~~~~~~~~~~li~G~~G~GKTtl~~~l~~~--~~~~~~~~~~~i~~~~~~~~~~~~~~ 93 (389)
T 1fnn_A 16 PKRLPHREQQLQQLDILLGNWLRNPGHHYPRATLLGRPGTGKTVTLRKLWEL--YKDKTTARFVYINGFIYRNFTAIIGE 93 (389)
T ss_dssp CSCCTTCHHHHHHHHHHHHHHHHSTTSSCCEEEEECCTTSSHHHHHHHHHHH--HTTSCCCEEEEEETTTCCSHHHHHHH
T ss_pred CCCCCChHHHHHHHHHHHHHHHcCCCCCCCeEEEECCCCCCHHHHHHHHHHH--HhhhcCeeEEEEeCccCCCHHHHHHH
Confidence 4679999999999999887532110122348999999999999999999984 33321 35678888888888899999
Q ss_pred HHHHhcCCCCC-CCcHHHHHHHHHHHhc--CceEEEEEecCCCCCccChhHHHHhhhCC-C---CCcEEEEEcCChhhhh
Q 002308 228 MLEALTGSTSN-LNALQSLLISIDESIA--GKRFLLVLDDVWDGDYIKWEPFYRCLKKG-L---HGSKILITTRKESIVS 300 (938)
Q Consensus 228 i~~~l~~~~~~-~~~~~~~~~~l~~~l~--~~~~LlVlDdv~~~~~~~~~~l~~~l~~~-~---~gs~ilvTtr~~~v~~ 300 (938)
++..++..... .....+....+...+. +++.+||||+++..+......+...+... . .+..||++|+......
T Consensus 94 l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~~L~~~~~~~~~~~~~~~~iI~~~~~~~~~~ 173 (389)
T 1fnn_A 94 IARSLNIPFPRRGLSRDEFLALLVEHLRERDLYMFLVLDDAFNLAPDILSTFIRLGQEADKLGAFRIALVIVGHNDAVLN 173 (389)
T ss_dssp HHHHTTCCCCSSCCCHHHHHHHHHHHHHHTTCCEEEEEETGGGSCHHHHHHHHHHTTCHHHHSSCCEEEEEEESSTHHHH
T ss_pred HHHHhCccCCCCCCCHHHHHHHHHHHHhhcCCeEEEEEECccccchHHHHHHHHHHHhCCCCCcCCEEEEEEECCchHHH
Confidence 99988654322 2234555555555543 56899999999876544445555554321 1 4667888887664332
Q ss_pred hhc-------CCceEeCCCCChHHHHHHHHHhhcCCCCCchhhHHHHHHHHHHHhc---------CCChhHHHHHHhhhc
Q 002308 301 MMR-------STDIISIEELAEEECWVLFKRLAFFGRSTEECEKLEQIGQRIARKC---------KGLPLAAKTMGSLMS 364 (938)
Q Consensus 301 ~~~-------~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~---------~g~Plai~~~~~~l~ 364 (938)
... ....+.+.+++.++..+++...+...... .....+..+.+++.+ +|.|..+..+.....
T Consensus 174 ~l~~~~~~r~~~~~i~~~pl~~~~~~~~l~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~~~G~~r~~~~~l~~a~ 251 (389)
T 1fnn_A 174 NLDPSTRGIMGKYVIRFSPYTKDQIFDILLDRAKAGLAE--GSYSEDILQMIADITGAQTPLDTNRGDARLAIDILYRSA 251 (389)
T ss_dssp TSCHHHHHHHTTCEEECCCCBHHHHHHHHHHHHHHHBCT--TSSCHHHHHHHHHHHSBSSTTCTTSCCHHHHHHHHHHHH
T ss_pred HhCHHhhhcCCCceEEeCCCCHHHHHHHHHHHHHhhcCC--CCCCHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHHHHH
Confidence 221 12369999999999999998875320000 011123467888888 788765544433221
Q ss_pred ------CC--CCHHHHHHHHhccccccccccccchhhHHhhhccCChhHHHHHhHhccCC---CCcccChHHHHHHHHH-
Q 002308 365 ------SK--KTEEEWKRILNSDLWKVEEIEKGVLTPLWLSYNDLPSRVKRCFSYCAVFP---KDYNIKKDELITLWMA- 432 (938)
Q Consensus 365 ------~~--~~~~~w~~~~~~~~~~~~~~~~~~~~~l~~sy~~L~~~~k~~f~~~~~fp---~~~~i~~~~li~~w~a- 432 (938)
.. -+.+......... ....+.-.+..|+.+.+.++..++.+. .+..+....+...+..
T Consensus 252 ~~a~~~~~~~i~~~~v~~~~~~~----------~~~~~~~~l~~l~~~~~~~L~~l~~~~~~~~~~~~~~~~i~~~~~~~ 321 (389)
T 1fnn_A 252 YAAQQNGRKHIAPEDVRKSSKEV----------LFGISEEVLIGLPLHEKLFLLAIVRSLKISHTPYITFGDAEESYKIV 321 (389)
T ss_dssp HHHHHTTCSSCCHHHHHHHHHHH----------SCCCCHHHHHHSCHHHHHHHHHHHHHHHHHCSSCEEHHHHHHHHHHH
T ss_pred HHHHHhCCCCcCHHHHHHHHHHH----------hhhhHHHHHHcCCHHHHHHHHHHHHHHhhccCCCccHHHHHHHHHHH
Confidence 11 1222222222110 112234456778888888888777654 2224555565554432
Q ss_pred ---cCCCcchhccccchHHHHHHHHHHHHHhccccccccc
Q 002308 433 ---QGYLSAEAAEQDEEMETIGEEYFGILASRSFFQEFKK 469 (938)
Q Consensus 433 ---~g~i~~~~~~~~~~~~~~~~~~~~~L~~~~ll~~~~~ 469 (938)
.|... . .......++..|...+++.....
T Consensus 322 ~~~~~~~~-------~-~~~~~~~~l~~L~~~gli~~~~~ 353 (389)
T 1fnn_A 322 CEEYGERP-------R-VHSQLWSYLNDLREKGIVETRQN 353 (389)
T ss_dssp HHHTTCCC-------C-CHHHHHHHHHHHHHTTSSEEEEC
T ss_pred HHHcCCCC-------C-CHHHHHHHHHHHHhCCCeEEeee
Confidence 12111 0 12345578999999999987543
No 125
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.41 E-value=6.8e-13 Score=134.47 Aligned_cols=147 Identities=20% Similarity=0.298 Sum_probs=122.9
Q ss_pred EeeCCcccccCCCCcccccceEEEEccCCCcC-cccccccCceeEEeccCCCCCCCCchhhHHHHHhccCCCeeEEecCC
Q 002308 499 LEVNGSEELNVPNSLDEKVRHLMLIMGKESTF-PISTCRAKRIRSLLIEWPEFGHSSLNGEILEELFRESTSLRALDFPS 577 (938)
Q Consensus 499 ~~~~~~~~~~~~~~~~~~~r~l~l~~~~~~~~-~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~ 577 (938)
+.+.......+|...+..++.+.+++|.+... +..+..+++|+.|.+++|.+ ..+++..|..+++|++|+|++
T Consensus 24 v~c~~~~l~~ip~~~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l------~~i~~~~~~~l~~L~~L~Ls~ 97 (229)
T 3e6j_A 24 VDCRSKRHASVPAGIPTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQL------GALPVGVFDSLTQLTVLDLGT 97 (229)
T ss_dssp EECTTSCCSSCCSCCCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC------CCCCTTTTTTCTTCCEEECCS
T ss_pred eEccCCCcCccCCCCCCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCC------CCcChhhcccCCCcCEEECCC
Confidence 34444445566777779999999999999885 56788999999999999986 233445588999999999999
Q ss_pred CCCCcccCccccccCCCCeeeecCCccccccccccCCCCccEEEcCCCCCccccc-ccccccCccceeecCCCccc
Q 002308 578 FYLPLEIPRNIEKLVHLRYLNLSDQKIKKLPETLCELYNLEKLDISGCSDLRELP-KGIGKLINMKHLLNSGTRSL 652 (938)
Q Consensus 578 n~~~~~lp~~~~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~l~~~~~l~~lp-~~i~~l~~L~~L~l~~~~~~ 652 (938)
|.+....+..+..+++|++|+|++|.++.+|..+..+++|++|++++|. +..+| ..+..+++|++|++++|...
T Consensus 98 N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~l~~N~~~ 172 (229)
T 3e6j_A 98 NQLTVLPSAVFDRLVHLKELFMCCNKLTELPRGIERLTHLTHLALDQNQ-LKSIPHGAFDRLSSLTHAYLFGNPWD 172 (229)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCCSCCTTGGGCTTCSEEECCSSC-CCCCCTTTTTTCTTCCEEECTTSCBC
T ss_pred CcCCccChhHhCcchhhCeEeccCCcccccCcccccCCCCCEEECCCCc-CCccCHHHHhCCCCCCEEEeeCCCcc
Confidence 9966555566889999999999999999999999999999999999998 55555 56889999999999999544
No 126
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.39 E-value=9.7e-13 Score=132.35 Aligned_cols=141 Identities=13% Similarity=0.106 Sum_probs=119.3
Q ss_pred cccCCCCcccccceEEEEccCCCcCc--ccccccCceeEEeccCCCCCCCCchhhHHHHHhccCCCeeEEecCCCCCCcc
Q 002308 506 ELNVPNSLDEKVRHLMLIMGKESTFP--ISTCRAKRIRSLLIEWPEFGHSSLNGEILEELFRESTSLRALDFPSFYLPLE 583 (938)
Q Consensus 506 ~~~~~~~~~~~~r~l~l~~~~~~~~~--~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~n~~~~~ 583 (938)
...+|...+..++.+.+++|.+...+ ..+..+++|+.|.+++|.+. .+++..|..+++|++|+|++|.+...
T Consensus 23 l~~iP~~~~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~------~i~~~~~~~l~~L~~L~Ls~N~l~~~ 96 (220)
T 2v70_A 23 LNKIPEHIPQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKIT------DIEEGAFEGASGVNEILLTSNRLENV 96 (220)
T ss_dssp CSSCCSCCCTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCC------EECTTTTTTCTTCCEEECCSSCCCCC
T ss_pred cccCccCCCCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCC------EECHHHhCCCCCCCEEECCCCccCcc
Confidence 33456666788999999999998763 34789999999999999862 34455688999999999999997666
Q ss_pred cCccccccCCCCeeeecCCccccc-cccccCCCCccEEEcCCCCCcccccccccccCccceeecCCCccc
Q 002308 584 IPRNIEKLVHLRYLNLSDQKIKKL-PETLCELYNLEKLDISGCSDLRELPKGIGKLINMKHLLNSGTRSL 652 (938)
Q Consensus 584 lp~~~~~l~~L~~L~L~~~~i~~l-p~~i~~l~~L~~L~l~~~~~l~~lp~~i~~l~~L~~L~l~~~~~~ 652 (938)
.|..|+.+++|++|+|++|.++.+ |..+..+++|++|++++|......|..|..+++|++|++++|...
T Consensus 97 ~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 166 (220)
T 2v70_A 97 QHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFN 166 (220)
T ss_dssp CGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEE
T ss_pred CHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCc
Confidence 667799999999999999999977 678999999999999999965556888999999999999999654
No 127
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.38 E-value=2e-12 Score=133.93 Aligned_cols=146 Identities=16% Similarity=0.143 Sum_probs=114.0
Q ss_pred cccceEEEEccCCCcCcccccccCceeEEeccCCCCCCCCchhhHHHHHhccCCCeeEEecCCCCCCcccCccccccCCC
Q 002308 515 EKVRHLMLIMGKESTFPISTCRAKRIRSLLIEWPEFGHSSLNGEILEELFRESTSLRALDFPSFYLPLEIPRNIEKLVHL 594 (938)
Q Consensus 515 ~~~r~l~l~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~n~~~~~lp~~~~~l~~L 594 (938)
..++.+.+.++.+..++ .+..+++|+.|.+++|.+.. +++ +..+++|++|+|++|. ...+|.... .+|
T Consensus 41 ~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~L~~N~i~~------~~~--l~~l~~L~~L~L~~N~-l~~l~~~~~--~~L 108 (263)
T 1xeu_A 41 SGVQNFNGDNSNIQSLA-GMQFFTNLKELHLSHNQISD------LSP--LKDLTKLEELSVNRNR-LKNLNGIPS--ACL 108 (263)
T ss_dssp TTCSEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCC------CGG--GTTCSSCCEEECCSSC-CSCCTTCCC--SSC
T ss_pred CcCcEEECcCCCcccch-HHhhCCCCCEEECCCCccCC------Chh--hccCCCCCEEECCCCc-cCCcCcccc--Ccc
Confidence 67888888888888766 67788899999888887632 222 7788899999999998 444554333 889
Q ss_pred CeeeecCCccccccccccCCCCccEEEcCCCCCcccccccccccCccceeecCCCcccccCCccCCCCCCCcccCeeEec
Q 002308 595 RYLNLSDQKIKKLPETLCELYNLEKLDISGCSDLRELPKGIGKLINMKHLLNSGTRSLRYMPVGIGRLTGLRTLGEFHVS 674 (938)
Q Consensus 595 ~~L~L~~~~i~~lp~~i~~l~~L~~L~l~~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~ 674 (938)
++|+|++|.++.+| .+..+++|++|++++|. +..+| .+..+++|++|++++|..... ..+..+++|+.|++++|.
T Consensus 109 ~~L~L~~N~l~~~~-~l~~l~~L~~L~Ls~N~-i~~~~-~l~~l~~L~~L~L~~N~i~~~--~~l~~l~~L~~L~l~~N~ 183 (263)
T 1xeu_A 109 SRLFLDNNELRDTD-SLIHLKNLEILSIRNNK-LKSIV-MLGFLSKLEVLDLHGNEITNT--GGLTRLKKVNWIDLTGQK 183 (263)
T ss_dssp CEEECCSSCCSBSG-GGTTCTTCCEEECTTSC-CCBCG-GGGGCTTCCEEECTTSCCCBC--TTSTTCCCCCEEEEEEEE
T ss_pred cEEEccCCccCCCh-hhcCcccccEEECCCCc-CCCCh-HHccCCCCCEEECCCCcCcch--HHhccCCCCCEEeCCCCc
Confidence 99999999888876 58888999999999988 55666 588888999999988865544 567888889999988887
Q ss_pred CCC
Q 002308 675 AGG 677 (938)
Q Consensus 675 ~~~ 677 (938)
+..
T Consensus 184 ~~~ 186 (263)
T 1xeu_A 184 CVN 186 (263)
T ss_dssp EEC
T ss_pred ccC
Confidence 654
No 128
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.37 E-value=1.3e-12 Score=131.47 Aligned_cols=109 Identities=20% Similarity=0.302 Sum_probs=70.0
Q ss_pred CCeeEEecCCCCCCcccCccccccCCCCeeeecCCccccc-cccccCCCCccEEEcCCCCCccccccc-ccccCccceee
Q 002308 568 TSLRALDFPSFYLPLEIPRNIEKLVHLRYLNLSDQKIKKL-PETLCELYNLEKLDISGCSDLRELPKG-IGKLINMKHLL 645 (938)
Q Consensus 568 ~~Lr~L~L~~n~~~~~lp~~~~~l~~L~~L~L~~~~i~~l-p~~i~~l~~L~~L~l~~~~~l~~lp~~-i~~l~~L~~L~ 645 (938)
+.|+.|+|++|.+....+..|..+++|++|+|++|.++.+ |..|.++++|++|+|++|. +..+|.. +..+++|++|+
T Consensus 32 ~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~-l~~l~~~~f~~l~~L~~L~ 110 (220)
T 2v9t_B 32 ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNK-ITELPKSLFEGLFSLQLLL 110 (220)
T ss_dssp TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSC-CCCCCTTTTTTCTTCCEEE
T ss_pred cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCc-CCccCHhHccCCCCCCEEE
Confidence 4677777777774443444666777777777777777655 5567777777777777776 4444443 46677777777
Q ss_pred cCCCcccccCCccCCCCCCCcccCeeEecCCC
Q 002308 646 NSGTRSLRYMPVGIGRLTGLRTLGEFHVSAGG 677 (938)
Q Consensus 646 l~~~~~~~~~p~~l~~l~~L~~L~l~~~~~~~ 677 (938)
+++|.+....|..+..+++|+.|++++|.+..
T Consensus 111 L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 142 (220)
T 2v9t_B 111 LNANKINCLRVDAFQDLHNLNLLSLYDNKLQT 142 (220)
T ss_dssp CCSSCCCCCCTTTTTTCTTCCEEECCSSCCSC
T ss_pred CCCCCCCEeCHHHcCCCCCCCEEECCCCcCCE
Confidence 77775555455556666666666666665544
No 129
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.37 E-value=3.6e-13 Score=147.05 Aligned_cols=174 Identities=18% Similarity=0.116 Sum_probs=101.9
Q ss_pred cceEEEEccCCCcCcccccccCceeEEeccCCCCCCCCchhhHHHHHhc-cCCCeeEEecCCCCCCcccCccccccCCCC
Q 002308 517 VRHLMLIMGKESTFPISTCRAKRIRSLLIEWPEFGHSSLNGEILEELFR-ESTSLRALDFPSFYLPLEIPRNIEKLVHLR 595 (938)
Q Consensus 517 ~r~l~l~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~-~~~~Lr~L~L~~n~~~~~lp~~~~~l~~L~ 595 (938)
.+.+.+.++.+..+|..+. +.++.|++++|.+. .+++..|. .+++|++|+|++|.+....+..|..+++|+
T Consensus 20 ~~~l~c~~~~l~~iP~~~~--~~l~~L~Ls~N~l~------~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~ 91 (361)
T 2xot_A 20 SNILSCSKQQLPNVPQSLP--SYTALLDLSHNNLS------RLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLR 91 (361)
T ss_dssp TTEEECCSSCCSSCCSSCC--TTCSEEECCSSCCC------EECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCC
T ss_pred CCEEEeCCCCcCccCccCC--CCCCEEECCCCCCC------ccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCC
Confidence 3455566666665555432 34666776666542 22333344 667777777777774444445677777777
Q ss_pred eeeecCCccccccc-cccCCCCccEEEcCCCCCcccccccccccCccceeecCCCcccccCCccC----CCCCCCcccCe
Q 002308 596 YLNLSDQKIKKLPE-TLCELYNLEKLDISGCSDLRELPKGIGKLINMKHLLNSGTRSLRYMPVGI----GRLTGLRTLGE 670 (938)
Q Consensus 596 ~L~L~~~~i~~lp~-~i~~l~~L~~L~l~~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~l----~~l~~L~~L~l 670 (938)
+|+|++|.++.+|. .|..+++|++|+|++|.+....|..|..+++|++|+|++|.+. .+|..+ ..+++|+.|++
T Consensus 92 ~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~-~l~~~~~~~~~~l~~L~~L~L 170 (361)
T 2xot_A 92 YLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQIS-RFPVELIKDGNKLPKLMLLDL 170 (361)
T ss_dssp EEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCC-SCCGGGTC----CTTCCEEEC
T ss_pred EEECCCCcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCC-eeCHHHhcCcccCCcCCEEEC
Confidence 77777777776654 4667777777777777744444566777777777777776433 344432 45677777777
Q ss_pred eEecCCCCCCCCcccccccccc--cccCcceeecC
Q 002308 671 FHVSAGGGVDGSKACRLESLKN--LEHLQVCCIRR 703 (938)
Q Consensus 671 ~~~~~~~~~~~~~~~~l~~l~~--L~~L~l~~~~~ 703 (938)
++|.+.... ...+..++. ++.|++.+|.+
T Consensus 171 ~~N~l~~l~----~~~~~~l~~~~l~~l~l~~N~~ 201 (361)
T 2xot_A 171 SSNKLKKLP----LTDLQKLPAWVKNGLYLHNNPL 201 (361)
T ss_dssp CSSCCCCCC----HHHHHHSCHHHHTTEECCSSCE
T ss_pred CCCCCCccC----HHHhhhccHhhcceEEecCCCc
Confidence 776665411 112334443 35566666654
No 130
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.35 E-value=4.8e-13 Score=146.08 Aligned_cols=160 Identities=23% Similarity=0.195 Sum_probs=74.7
Q ss_pred CCCCcccccceEEEEccCCCcCccc-cc-ccCceeEEeccCCCCCCCCchhhHHHHHhccCCCeeEEecCCCCCCcccCc
Q 002308 509 VPNSLDEKVRHLMLIMGKESTFPIS-TC-RAKRIRSLLIEWPEFGHSSLNGEILEELFRESTSLRALDFPSFYLPLEIPR 586 (938)
Q Consensus 509 ~~~~~~~~~r~l~l~~~~~~~~~~~-~~-~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~n~~~~~lp~ 586 (938)
+|...+..++.|++++|.+..++.. +. .+++|+.|.+++|.+ ..+++..|..+++|++|+|++|.+....+.
T Consensus 33 iP~~~~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i------~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~ 106 (361)
T 2xot_A 33 VPQSLPSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHL------NFISSEAFVPVPNLRYLDLSSNHLHTLDEF 106 (361)
T ss_dssp CCSSCCTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCC------CEECTTTTTTCTTCCEEECCSSCCCEECTT
T ss_pred cCccCCCCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcC------CccChhhccCCCCCCEEECCCCcCCcCCHH
Confidence 3444444555555555555543322 22 455555555555543 122223345555555555555553333333
Q ss_pred cccccCCCCeeeecCCccccc-cccccCCCCccEEEcCCCCCcccccccc----cccCccceeecCCCcccccCCccCCC
Q 002308 587 NIEKLVHLRYLNLSDQKIKKL-PETLCELYNLEKLDISGCSDLRELPKGI----GKLINMKHLLNSGTRSLRYMPVGIGR 661 (938)
Q Consensus 587 ~~~~l~~L~~L~L~~~~i~~l-p~~i~~l~~L~~L~l~~~~~l~~lp~~i----~~l~~L~~L~l~~~~~~~~~p~~l~~ 661 (938)
.|..+++|++|+|++|.|..+ |..|..+++|+.|+|++|. +..+|..+ ..+++|++|+|++|.+....+..+..
T Consensus 107 ~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~-l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~ 185 (361)
T 2xot_A 107 LFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQ-ISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQK 185 (361)
T ss_dssp TTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC-CCSCCGGGTC----CTTCCEEECCSSCCCCCCHHHHHH
T ss_pred HhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCc-CCeeCHHHhcCcccCCcCCEEECCCCCCCccCHHHhhh
Confidence 455555555555555555543 3345555555555555555 33444433 34555555555555333221122333
Q ss_pred CCC--CcccCeeEecC
Q 002308 662 LTG--LRTLGEFHVSA 675 (938)
Q Consensus 662 l~~--L~~L~l~~~~~ 675 (938)
++. |+.|++.+|.+
T Consensus 186 l~~~~l~~l~l~~N~~ 201 (361)
T 2xot_A 186 LPAWVKNGLYLHNNPL 201 (361)
T ss_dssp SCHHHHTTEECCSSCE
T ss_pred ccHhhcceEEecCCCc
Confidence 433 24445444443
No 131
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.34 E-value=1.1e-12 Score=126.14 Aligned_cols=126 Identities=23% Similarity=0.192 Sum_probs=56.6
Q ss_pred cccceEEEEccCCC--cCcccccccCceeEEeccCCCCCCCCchhhHHHHHhccCCCeeEEecCCCCCCcccCccccccC
Q 002308 515 EKVRHLMLIMGKES--TFPISTCRAKRIRSLLIEWPEFGHSSLNGEILEELFRESTSLRALDFPSFYLPLEIPRNIEKLV 592 (938)
Q Consensus 515 ~~~r~l~l~~~~~~--~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~n~~~~~lp~~~~~l~ 592 (938)
..++.+.+.++.+. .++..+..+++|+.|.+.+|.+... ..+..+++|++|+|++|.+...+|..++.++
T Consensus 24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--------~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~ 95 (168)
T 2ell_A 24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--------SNLPKLPKLKKLELSENRIFGGLDMLAEKLP 95 (168)
T ss_dssp TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--------SSCCCCSSCCEEEEESCCCCSCCCHHHHHCT
T ss_pred ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--------hhhccCCCCCEEECcCCcCchHHHHHHhhCC
Confidence 45555555555554 3444444445555555544443210 1234444444444444443333444444444
Q ss_pred CCCeeeecCCcccccc--ccccCCCCccEEEcCCCCCcccccc----cccccCccceeecCCC
Q 002308 593 HLRYLNLSDQKIKKLP--ETLCELYNLEKLDISGCSDLRELPK----GIGKLINMKHLLNSGT 649 (938)
Q Consensus 593 ~L~~L~L~~~~i~~lp--~~i~~l~~L~~L~l~~~~~l~~lp~----~i~~l~~L~~L~l~~~ 649 (938)
+|++|+|++|.++.+| ..+..+++|++|++++|. +..+|. .+..+++|++|++++|
T Consensus 96 ~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~-l~~~~~~~~~~~~~l~~L~~L~l~~n 157 (168)
T 2ell_A 96 NLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCE-VTNLNDYRESVFKLLPQLTYLDGYDR 157 (168)
T ss_dssp TCCEEECBSSSCCSSGGGGGGSSCSCCCEEECCSSG-GGTSTTHHHHHHTTCSSCCEETTEET
T ss_pred CCCEEeccCCccCcchhHHHHhcCCCCCEEEeeCCc-CcchHHHHHHHHHhCccCcEecCCCC
Confidence 4444444444444433 344444444444444444 223332 3444444444444444
No 132
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.31 E-value=2.6e-12 Score=123.33 Aligned_cols=135 Identities=21% Similarity=0.224 Sum_probs=80.0
Q ss_pred cCCCeeEEecCCCCCC-cccCccccccCCCCeeeecCCccccccccccCCCCccEEEcCCCCCcccccccccccCcccee
Q 002308 566 ESTSLRALDFPSFYLP-LEIPRNIEKLVHLRYLNLSDQKIKKLPETLCELYNLEKLDISGCSDLRELPKGIGKLINMKHL 644 (938)
Q Consensus 566 ~~~~Lr~L~L~~n~~~-~~lp~~~~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~l~~~~~l~~lp~~i~~l~~L~~L 644 (938)
..++|++|++++|.+. +.+|..++.+++|++|++++|.++.+ ..+..+++|++|++++|.....+|..+..+++|++|
T Consensus 22 ~~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 100 (168)
T 2ell_A 22 TPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV-SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHL 100 (168)
T ss_dssp CTTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC-SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEE
T ss_pred CcccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh-hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEE
Confidence 3456777777777643 35666666777777777777776666 566667777777777776444456655567777777
Q ss_pred ecCCCcccccCC--ccCCCCCCCcccCeeEecCCCCCCCCcccccccccccccCcceeecC
Q 002308 645 LNSGTRSLRYMP--VGIGRLTGLRTLGEFHVSAGGGVDGSKACRLESLKNLEHLQVCCIRR 703 (938)
Q Consensus 645 ~l~~~~~~~~~p--~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~ 703 (938)
++++|.. ..+| ..+..+++|+.|++++|.+....+ .....+..+++|+.|++.+|..
T Consensus 101 ~Ls~N~l-~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~-~~~~~~~~l~~L~~L~l~~n~~ 159 (168)
T 2ell_A 101 NLSGNKL-KDISTLEPLKKLECLKSLDLFNCEVTNLND-YRESVFKLLPQLTYLDGYDRED 159 (168)
T ss_dssp ECBSSSC-CSSGGGGGGSSCSCCCEEECCSSGGGTSTT-HHHHHHTTCSSCCEETTEETTS
T ss_pred eccCCcc-CcchhHHHHhcCCCCCEEEeeCCcCcchHH-HHHHHHHhCccCcEecCCCCCh
Confidence 7776643 3333 456666666666666665543111 0001344555666666655544
No 133
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=99.30 E-value=5.2e-11 Score=122.56 Aligned_cols=189 Identities=15% Similarity=0.163 Sum_probs=121.2
Q ss_pred CCceecchhhHHHHHHHHhccCcccCCCeEEEEEEccCCChHHHHHHHHhhhhhhhcccC-------------------e
Q 002308 149 EEEICGRVGERNALLSMLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNHVEVKREFD-------------------K 209 (938)
Q Consensus 149 ~~~~vGr~~~~~~l~~~l~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~-------------------~ 209 (938)
...++||+.+++.+..++.... ..+.+.|+|++|+||||+|+.+++.......+. .
T Consensus 22 ~~~~~g~~~~~~~l~~~l~~~~-----~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (250)
T 1njg_A 22 FADVVGQEHVLTALANGLSLGR-----IHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCREIEQGRFVD 96 (250)
T ss_dssp GGGCCSCHHHHHHHHHHHHHTC-----CCSEEEEECSTTSCHHHHHHHHHHHHHCTTCSCSSCCSCSHHHHHHHTTCCSS
T ss_pred HHHHhCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCcccHHHHHHhccCCcc
Confidence 3569999999999999997532 235889999999999999999988532111110 1
Q ss_pred EEEEEeCCCCCHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHhcCceEEEEEecCCCCCccChhHHHHhhhCCCCCcEE
Q 002308 210 TLWVCVSETFDEFRIAKAMLEALTGSTSNLNALQSLLISIDESIAGKRFLLVLDDVWDGDYIKWEPFYRCLKKGLHGSKI 289 (938)
Q Consensus 210 ~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~i 289 (938)
.+.+..... ........+++.+... ...+++.+||+||++..+...+..+...+.....+..+
T Consensus 97 ~~~~~~~~~-~~~~~~~~~~~~~~~~----------------~~~~~~~vlviDe~~~l~~~~~~~l~~~l~~~~~~~~~ 159 (250)
T 1njg_A 97 LIEIDAASR-TKVEDTRDLLDNVQYA----------------PARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKF 159 (250)
T ss_dssp EEEEETTCG-GGHHHHHHHHHSCCCS----------------CSSSSSEEEEEETGGGSCHHHHHHHHHHHHSCCTTEEE
T ss_pred eEEecCccc-ccHHHHHHHHHHhhhc----------------hhcCCceEEEEECcccccHHHHHHHHHHHhcCCCceEE
Confidence 111111110 0011111111111100 01356799999999876656677777777766667888
Q ss_pred EEEcCChhhh-hh-hcCCceEeCCCCChHHHHHHHHHhhcCCCCCchhhHHHHHHHHHHHhcCCChhHHHHHHhhh
Q 002308 290 LITTRKESIV-SM-MRSTDIISIEELAEEECWVLFKRLAFFGRSTEECEKLEQIGQRIARKCKGLPLAAKTMGSLM 363 (938)
Q Consensus 290 lvTtr~~~v~-~~-~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~~~~~l 363 (938)
|+||+..... .. ......+.+.+++.++..+++...+........ .+..+.|++.++|.|..+..+...+
T Consensus 160 i~~t~~~~~~~~~l~~r~~~i~l~~l~~~e~~~~l~~~~~~~~~~~~----~~~~~~l~~~~~G~~~~~~~~~~~~ 231 (250)
T 1njg_A 160 LLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHIAHE----PRALQLLARAAEGSLRDALSLTDQA 231 (250)
T ss_dssp EEEESCGGGSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHTTCCBC----HHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred EEEeCChHhCCHHHHHHhhhccCCCCCHHHHHHHHHHHHHhcCCCCC----HHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 8888765321 11 223468999999999999999987753322222 2346789999999999988776543
No 134
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.28 E-value=4.9e-13 Score=159.10 Aligned_cols=144 Identities=18% Similarity=0.125 Sum_probs=97.4
Q ss_pred cCCCcCcccccccCceeEEeccCCCCCCCCchhhHHHHHhccCCCeeEEecCCCCCCcccCccccccCCCCeeeecCCcc
Q 002308 525 GKESTFPISTCRAKRIRSLLIEWPEFGHSSLNGEILEELFRESTSLRALDFPSFYLPLEIPRNIEKLVHLRYLNLSDQKI 604 (938)
Q Consensus 525 ~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~n~~~~~lp~~~~~l~~L~~L~L~~~~i 604 (938)
+.+...+..+..+++|+.|+|++|.+. .++.. +..+++|++|+|++|.+. .+|..|++|++|++|+|++|.|
T Consensus 211 n~~~~~~~~~~~l~~L~~L~Ls~n~l~------~l~~~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l 282 (727)
T 4b8c_D 211 NRMVMPKDSKYDDQLWHALDLSNLQIF------NISAN-IFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRL 282 (727)
T ss_dssp -----------CCCCCCEEECTTSCCS------CCCGG-GGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCC
T ss_pred cceecChhhhccCCCCcEEECCCCCCC------CCChh-hcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcC
Confidence 333334566777888888888887753 22233 336888888888888844 7888888888888888888888
Q ss_pred ccccccccCCCCccEEEcCCCCCcccccccccccCccceeecCCCcccccCCccCCCCCC-CcccCeeEecCCC
Q 002308 605 KKLPETLCELYNLEKLDISGCSDLRELPKGIGKLINMKHLLNSGTRSLRYMPVGIGRLTG-LRTLGEFHVSAGG 677 (938)
Q Consensus 605 ~~lp~~i~~l~~L~~L~l~~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~l~~l~~-L~~L~l~~~~~~~ 677 (938)
+.+|..|++|++|++|+|++|. +..+|..|+.|++|++|+|++|.+...+|..+..+.. +..|++.+|.+..
T Consensus 283 ~~lp~~~~~l~~L~~L~L~~N~-l~~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~ 355 (727)
T 4b8c_D 283 TSLPAELGSCFQLKYFYFFDNM-VTTLPWEFGNLCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPEI 355 (727)
T ss_dssp SSCCSSGGGGTTCSEEECCSSC-CCCCCSSTTSCTTCCCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCCCC
T ss_pred CccChhhcCCCCCCEEECCCCC-CCccChhhhcCCCccEEeCCCCccCCCChHHHhhcchhhhHHhhccCcccC
Confidence 8888888888888888888887 6678888888888888888888766666655543321 1234555665544
No 135
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.28 E-value=2.9e-12 Score=120.25 Aligned_cols=103 Identities=27% Similarity=0.261 Sum_probs=52.5
Q ss_pred hccCCCeeEEecCCCCCCcccCccccccCCCCeeeecCCcccc-ccccccCCCCccEEEcCCCCCccccc--ccccccCc
Q 002308 564 FRESTSLRALDFPSFYLPLEIPRNIEKLVHLRYLNLSDQKIKK-LPETLCELYNLEKLDISGCSDLRELP--KGIGKLIN 640 (938)
Q Consensus 564 ~~~~~~Lr~L~L~~n~~~~~lp~~~~~l~~L~~L~L~~~~i~~-lp~~i~~l~~L~~L~l~~~~~l~~lp--~~i~~l~~ 640 (938)
+..+++|++|++++|.+. .+ ..++.+++|++|++++|.++. +|..+..+++|++|++++|. +..+| ..+..+++
T Consensus 38 ~~~l~~L~~L~l~~n~l~-~~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ls~N~-i~~~~~~~~~~~l~~ 114 (149)
T 2je0_A 38 TDEFEELEFLSTINVGLT-SI-ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNK-IKDLSTIEPLKKLEN 114 (149)
T ss_dssp CTTCTTCCEEECTTSCCC-CC-TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEECTTSC-CCSHHHHGGGGGCTT
T ss_pred HhhcCCCcEEECcCCCCC-Cc-hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEECCCCc-CCChHHHHHHhhCCC
Confidence 344555555555555522 22 445555555555555555554 44445555555555555555 33322 44555555
Q ss_pred cceeecCCCcccccCCc----cCCCCCCCcccCe
Q 002308 641 MKHLLNSGTRSLRYMPV----GIGRLTGLRTLGE 670 (938)
Q Consensus 641 L~~L~l~~~~~~~~~p~----~l~~l~~L~~L~l 670 (938)
|++|++++|... ..|. .++.+++|+.|++
T Consensus 115 L~~L~l~~N~l~-~~~~~~~~~~~~l~~L~~L~l 147 (149)
T 2je0_A 115 LKSLDLFNCEVT-NLNDYRENVFKLLPQLTYLDG 147 (149)
T ss_dssp CCEEECTTCGGG-GSTTHHHHHHHHCTTCCEETT
T ss_pred CCEEeCcCCccc-chHHHHHHHHHHCCCcccccC
Confidence 555555555332 2222 3455555555554
No 136
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.28 E-value=8.2e-11 Score=130.14 Aligned_cols=295 Identities=14% Similarity=0.096 Sum_probs=172.5
Q ss_pred CCCceecchhhHHHHHHHHhccCcccCCCeEEEEEEccCCChHHHHHHHHhhhhhhhccc---CeEEEEEeCCCCCHHHH
Q 002308 148 DEEEICGRVGERNALLSMLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNHVEVKREF---DKTLWVCVSETFDEFRI 224 (938)
Q Consensus 148 ~~~~~vGr~~~~~~l~~~l~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f---~~~~wv~~~~~~~~~~~ 224 (938)
.+..|+||+.+++.+.+++..... ......+.|+|++|+||||||+.+++. ....+ ..++|+++....+...+
T Consensus 18 ~p~~~~gr~~e~~~l~~~l~~~~~--~~~~~~vli~G~~G~GKTtl~~~l~~~--~~~~~~~~~~~~~i~~~~~~~~~~~ 93 (386)
T 2qby_A 18 IPDELPHREDQIRKIASILAPLYR--EEKPNNIFIYGLTGTGKTAVVKFVLSK--LHKKFLGKFKHVYINTRQIDTPYRV 93 (386)
T ss_dssp CCSCCTTCHHHHHHHHHSSGGGGG--TCCCCCEEEEECTTSSHHHHHHHHHHH--HHHHTCSSCEEEEEEHHHHCSHHHH
T ss_pred CCCCCCChHHHHHHHHHHHHHHHc--CCCCCeEEEECCCCCCHHHHHHHHHHH--HHHHhcCCceEEEEECCCCCCHHHH
Confidence 347899999999999998875321 234568999999999999999999984 33332 35678887766677788
Q ss_pred HHHHHHHhcCCCCC-CCcHHHHHHHHHHHhc--CceEEEEEecCCCCC----ccChhHHHHhhhC-CCCCcEEEEEcCCh
Q 002308 225 AKAMLEALTGSTSN-LNALQSLLISIDESIA--GKRFLLVLDDVWDGD----YIKWEPFYRCLKK-GLHGSKILITTRKE 296 (938)
Q Consensus 225 ~~~i~~~l~~~~~~-~~~~~~~~~~l~~~l~--~~~~LlVlDdv~~~~----~~~~~~l~~~l~~-~~~gs~ilvTtr~~ 296 (938)
+..++..++..... .....+....+.+.+. +++.+||||+++... ...+..+...+.. ...+..+|+||+..
T Consensus 94 ~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~~~l~~l~~~~~~~~~~~~~~I~~~~~~ 173 (386)
T 2qby_A 94 LADLLESLDVKVPFTGLSIAELYRRLVKAVRDYGSQVVIVLDEIDAFVKKYNDDILYKLSRINSEVNKSKISFIGITNDV 173 (386)
T ss_dssp HHHHTTTTSCCCCSSSCCHHHHHHHHHHHHHTCCSCEEEEEETHHHHHHSSCSTHHHHHHHHHHSCCC--EEEEEEESCG
T ss_pred HHHHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcChhhhhccCcCHHHHHHhhchhhcCCCeEEEEEEECCC
Confidence 88888877543221 2234455555555554 458999999996532 1223334333322 23455678888766
Q ss_pred hhhhhhc-----C--CceEeCCCCChHHHHHHHHHhhcCCC-CCchhhHHHHHHHHHHHhcC---CChhHHHHHHhhhc-
Q 002308 297 SIVSMMR-----S--TDIISIEELAEEECWVLFKRLAFFGR-STEECEKLEQIGQRIARKCK---GLPLAAKTMGSLMS- 364 (938)
Q Consensus 297 ~v~~~~~-----~--~~~~~l~~L~~~~~~~lf~~~~~~~~-~~~~~~~~~~~~~~i~~~~~---g~Plai~~~~~~l~- 364 (938)
.....+. . ...+.+.+++.++..+++...+.... ..... .+..+.+++.++ |.|..+..+.....
T Consensus 174 ~~~~~~~~~~~~r~~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~G~~r~~~~ll~~a~~ 250 (386)
T 2qby_A 174 KFVDLLDPRVKSSLSEEEIIFPPYNAEELEDILTKRAQMAFKPGVLP---DNVIKLCAALAAREHGDARRALDLLRVSGE 250 (386)
T ss_dssp GGGGGCTTHHHHTTTTEEEEECCCCHHHHHHHHHHHHHHHBCSSCSC---HHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred ChHhhhCHHHhccCCCeeEEeCCCCHHHHHHHHHHHHHhhccCCCCC---HHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 4322211 1 14799999999999999998643100 11111 233556777776 99985443332211
Q ss_pred -----C--CCCHHHHHHHHhccccccccccccchhhHHhhhccCChhHHHHHhHhccCCC-C-cccChHHHHHHHH--H-
Q 002308 365 -----S--KKTEEEWKRILNSDLWKVEEIEKGVLTPLWLSYNDLPSRVKRCFSYCAVFPK-D-YNIKKDELITLWM--A- 432 (938)
Q Consensus 365 -----~--~~~~~~w~~~~~~~~~~~~~~~~~~~~~l~~sy~~L~~~~k~~f~~~~~fp~-~-~~i~~~~li~~w~--a- 432 (938)
. .-+.+.+...+... ....+.-.+..++...+..+..++...+ + ..+....+.+... +
T Consensus 251 ~a~~~~~~~i~~~~v~~a~~~~----------~~~~~~~~~~~l~~~~~~il~ai~~~~~~g~~~~~~~~l~~~~~~~~~ 320 (386)
T 2qby_A 251 IAERMKDTKVKEEYVYMAKEEI----------ERDRVRDIILTLPFHSKLVLMAVVSISSEENVVSTTGAVYETYLNICK 320 (386)
T ss_dssp HHHHTTCSSCCHHHHHHHHHHH----------HHHHHHHHHHTSCHHHHHHHHHHHHHC-----CEEHHHHHHHHHHHHH
T ss_pred HHHhcCCCccCHHHHHHHHHHH----------hhchHHHHHHcCCHHHHHHHHHHHHHHhcCCCceeHHHHHHHHHHHHH
Confidence 1 11344444333321 1124555677888888887777774322 1 1233333322211 1
Q ss_pred -cCCCcchhccccchHHHHHHHHHHHHHhccccccc
Q 002308 433 -QGYLSAEAAEQDEEMETIGEEYFGILASRSFFQEF 467 (938)
Q Consensus 433 -~g~i~~~~~~~~~~~~~~~~~~~~~L~~~~ll~~~ 467 (938)
.| +.. ........+++.|...+++...
T Consensus 321 ~~g-~~~-------~~~~~~~~~l~~L~~~gli~~~ 348 (386)
T 2qby_A 321 KLG-VEA-------VTQRRVSDIINELDMVGILTAK 348 (386)
T ss_dssp HHT-CCC-------CCHHHHHHHHHHHHHHTSEEEE
T ss_pred hcC-CCC-------CCHHHHHHHHHHHHhCCCEEEE
Confidence 12 110 0123345678999999999764
No 137
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.25 E-value=6.5e-12 Score=121.51 Aligned_cols=132 Identities=22% Similarity=0.180 Sum_probs=88.7
Q ss_pred cccccCceeEEeccCCCCCCCCchhhHHHHHhccCCCeeEEecCCCCCCcccCccccccCCCCeeeecCCccccccccc-
Q 002308 533 STCRAKRIRSLLIEWPEFGHSSLNGEILEELFRESTSLRALDFPSFYLPLEIPRNIEKLVHLRYLNLSDQKIKKLPETL- 611 (938)
Q Consensus 533 ~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~n~~~~~lp~~~~~l~~L~~L~L~~~~i~~lp~~i- 611 (938)
.+..+++|+.|.+++|.+.. + +.+....++|++|+|++|.+. .+ ..++.+++|++|+|++|.++.+|..+
T Consensus 14 ~~~~~~~L~~L~l~~n~l~~------i-~~~~~~~~~L~~L~Ls~N~l~-~~-~~l~~l~~L~~L~Ls~N~l~~~~~~~~ 84 (176)
T 1a9n_A 14 QYTNAVRDRELDLRGYKIPV------I-ENLGATLDQFDAIDFSDNEIR-KL-DGFPLLRRLKTLLVNNNRICRIGEGLD 84 (176)
T ss_dssp EEECTTSCEEEECTTSCCCS------C-CCGGGGTTCCSEEECCSSCCC-EE-CCCCCCSSCCEEECCSSCCCEECSCHH
T ss_pred hcCCcCCceEEEeeCCCCch------h-HHhhhcCCCCCEEECCCCCCC-cc-cccccCCCCCEEECCCCcccccCcchh
Confidence 34556777777777776531 1 122333447888888888743 34 56777788888888888888777554
Q ss_pred cCCCCccEEEcCCCCCcccccc--cccccCccceeecCCCcccccCCcc----CCCCCCCcccCeeEecC
Q 002308 612 CELYNLEKLDISGCSDLRELPK--GIGKLINMKHLLNSGTRSLRYMPVG----IGRLTGLRTLGEFHVSA 675 (938)
Q Consensus 612 ~~l~~L~~L~l~~~~~l~~lp~--~i~~l~~L~~L~l~~~~~~~~~p~~----l~~l~~L~~L~l~~~~~ 675 (938)
..+++|++|++++|. +..+|. .+..+++|++|++++|... .+|.. +..+++|+.|++..|..
T Consensus 85 ~~l~~L~~L~L~~N~-i~~~~~~~~l~~l~~L~~L~l~~N~i~-~~~~~~~~~~~~l~~L~~Ld~~~n~~ 152 (176)
T 1a9n_A 85 QALPDLTELILTNNS-LVELGDLDPLASLKSLTYLCILRNPVT-NKKHYRLYVIYKVPQVRVLDFQKVKL 152 (176)
T ss_dssp HHCTTCCEEECCSCC-CCCGGGGGGGGGCTTCCEEECCSSGGG-GSTTHHHHHHHHCTTCSEETTEECCH
T ss_pred hcCCCCCEEECCCCc-CCcchhhHhhhcCCCCCEEEecCCCCC-CcHhHHHHHHHHCCccceeCCCcCCH
Confidence 778888888888877 566665 6777788888888877543 45553 66667777777666543
No 138
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.25 E-value=2.8e-12 Score=120.36 Aligned_cols=133 Identities=19% Similarity=0.192 Sum_probs=104.9
Q ss_pred ccCCCeeEEecCCCCCC-cccCccccccCCCCeeeecCCccccccccccCCCCccEEEcCCCCCcccccccccccCccce
Q 002308 565 RESTSLRALDFPSFYLP-LEIPRNIEKLVHLRYLNLSDQKIKKLPETLCELYNLEKLDISGCSDLRELPKGIGKLINMKH 643 (938)
Q Consensus 565 ~~~~~Lr~L~L~~n~~~-~~lp~~~~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~l~~~~~l~~lp~~i~~l~~L~~ 643 (938)
...++|+.|++++|.+. +.+|..++.+++|++|++++|.++.+ ..++.+++|++|++++|.....+|..+..+++|++
T Consensus 14 ~~~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~ 92 (149)
T 2je0_A 14 RTPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI-ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTH 92 (149)
T ss_dssp CCGGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC-TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCE
T ss_pred CCCccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc-hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCE
Confidence 34578999999999965 47898899999999999999999988 78999999999999999955558888888999999
Q ss_pred eecCCCccccc-CCccCCCCCCCcccCeeEecCCCCCCCCcccccccccccccCcce
Q 002308 644 LLNSGTRSLRY-MPVGIGRLTGLRTLGEFHVSAGGGVDGSKACRLESLKNLEHLQVC 699 (938)
Q Consensus 644 L~l~~~~~~~~-~p~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~l~ 699 (938)
|++++|..... .|..++.+++|+.|++++|.+....+ .....+..+++|+.|+++
T Consensus 93 L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~-~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 93 LNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLND-YRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp EECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTT-HHHHHHHHCTTCCEETTB
T ss_pred EECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHH-HHHHHHHHCCCcccccCC
Confidence 99999965442 23678888999999988887654211 000235566677766653
No 139
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.25 E-value=1e-11 Score=121.96 Aligned_cols=124 Identities=20% Similarity=0.211 Sum_probs=60.1
Q ss_pred ceEEEEccCCCcCcccccccCceeEEeccCCCCCCCCchhhHHH-HHhccCCCeeEEecCCCCCCcccCccccccCCCCe
Q 002308 518 RHLMLIMGKESTFPISTCRAKRIRSLLIEWPEFGHSSLNGEILE-ELFRESTSLRALDFPSFYLPLEIPRNIEKLVHLRY 596 (938)
Q Consensus 518 r~l~l~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~-~~~~~~~~Lr~L~L~~n~~~~~lp~~~~~l~~L~~ 596 (938)
+.++++++.+..+|..+.. +++.|.+.+|.+.. +++ .+|..+++|++|+|++|.+.+..|..|+.+++|++
T Consensus 11 ~~l~~s~~~l~~ip~~~~~--~l~~L~l~~n~i~~------~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~ 82 (192)
T 1w8a_A 11 TTVDCTGRGLKEIPRDIPL--HTTELLLNDNELGR------ISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQE 82 (192)
T ss_dssp TEEECTTSCCSSCCSCCCT--TCSEEECCSCCCCS------BCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCE
T ss_pred CEEEcCCCCcCcCccCCCC--CCCEEECCCCcCCc------cCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCE
Confidence 4555555555544443322 55555555554311 111 12444555555555555544434455555555555
Q ss_pred eeecCCccccccc-cccCCCCccEEEcCCCCCcccccccccccCccceeecCCC
Q 002308 597 LNLSDQKIKKLPE-TLCELYNLEKLDISGCSDLRELPKGIGKLINMKHLLNSGT 649 (938)
Q Consensus 597 L~L~~~~i~~lp~-~i~~l~~L~~L~l~~~~~l~~lp~~i~~l~~L~~L~l~~~ 649 (938)
|+|++|.++.++. .+..+++|++|++++|.+....|..+..+++|++|++++|
T Consensus 83 L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N 136 (192)
T 1w8a_A 83 LQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASN 136 (192)
T ss_dssp EECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTC
T ss_pred EECCCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCC
Confidence 5555555554433 2455555555555555533344444555555555555555
No 140
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=99.24 E-value=2.6e-10 Score=115.33 Aligned_cols=186 Identities=11% Similarity=0.003 Sum_probs=120.0
Q ss_pred CCceecchhhHHHHHHHHhccCcccCCCeEEEEEEccCCChHHHHHHHHhhhhhhhccc-CeEEEEEeCCCCCHHHHHHH
Q 002308 149 EEEICGRVGERNALLSMLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNHVEVKREF-DKTLWVCVSETFDEFRIAKA 227 (938)
Q Consensus 149 ~~~~vGr~~~~~~l~~~l~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f-~~~~wv~~~~~~~~~~~~~~ 227 (938)
...++||+..++.+.+++.... ...+.|+|++|+|||++|+.+++... ...+ ...+.+..+.......+...
T Consensus 16 ~~~~~g~~~~~~~l~~~l~~~~------~~~~ll~G~~G~GKT~l~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (226)
T 2chg_A 16 LDEVVGQDEVIQRLKGYVERKN------IPHLLFSGPPGTGKTATAIALARDLF-GENWRDNFIEMNASDERGIDVVRHK 88 (226)
T ss_dssp GGGCCSCHHHHHHHHHHHHTTC------CCCEEEECSTTSSHHHHHHHHHHHHH-GGGGGGGEEEEETTCTTCHHHHHHH
T ss_pred HHHHcCcHHHHHHHHHHHhCCC------CCeEEEECCCCCCHHHHHHHHHHHHh-ccccccceEEeccccccChHHHHHH
Confidence 3569999999999999997532 23389999999999999999988421 2222 23444454444333332222
Q ss_pred HHHHhcCCCCCCCcHHHHHHHHHHHhcCceEEEEEecCCCCCccChhHHHHhhhCCCCCcEEEEEcCChhhh-hh-hcCC
Q 002308 228 MLEALTGSTSNLNALQSLLISIDESIAGKRFLLVLDDVWDGDYIKWEPFYRCLKKGLHGSKILITTRKESIV-SM-MRST 305 (938)
Q Consensus 228 i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtr~~~v~-~~-~~~~ 305 (938)
+........ ...+++.+||+||++.........+...+.....+.++|+||+..... .. ....
T Consensus 89 ~~~~~~~~~---------------~~~~~~~vliiDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~l~~r~ 153 (226)
T 2chg_A 89 IKEFARTAP---------------IGGAPFKIIFLDEADALTADAQAALRRTMEMYSKSCRFILSCNYVSRIIEPIQSRC 153 (226)
T ss_dssp HHHHHTSCC---------------STTCSCEEEEEETGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHTTS
T ss_pred HHHHhcccC---------------CCccCceEEEEeChhhcCHHHHHHHHHHHHhcCCCCeEEEEeCChhhcCHHHHHhC
Confidence 221111000 012578899999998765555666777776666778888888765321 11 1223
Q ss_pred ceEeCCCCChHHHHHHHHHhhcCCCCCchhhHHHHHHHHHHHhcCCChhHHHHHH
Q 002308 306 DIISIEELAEEECWVLFKRLAFFGRSTEECEKLEQIGQRIARKCKGLPLAAKTMG 360 (938)
Q Consensus 306 ~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~~~ 360 (938)
..+.+.+++.++..+++...+........ .+..+.+++.++|.|..+..+.
T Consensus 154 ~~i~~~~~~~~~~~~~l~~~~~~~~~~~~----~~~~~~l~~~~~g~~r~l~~~l 204 (226)
T 2chg_A 154 AVFRFKPVPKEAMKKRLLEICEKEGVKIT----EDGLEALIYISGGDFRKAINAL 204 (226)
T ss_dssp EEEECCCCCHHHHHHHHHHHHHHHTCCBC----HHHHHHHHHHHTTCHHHHHHHH
T ss_pred ceeecCCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCCHHHHHHHH
Confidence 48999999999999999987643222111 2346688899999998655443
No 141
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.22 E-value=2.1e-11 Score=119.67 Aligned_cols=128 Identities=16% Similarity=0.081 Sum_probs=86.4
Q ss_pred eEEeccCCCCCCCCchhhHHHHHhccCCCeeEEecCCCCCCcccCc-cccccCCCCeeeecCCccccc-cccccCCCCcc
Q 002308 541 RSLLIEWPEFGHSSLNGEILEELFRESTSLRALDFPSFYLPLEIPR-NIEKLVHLRYLNLSDQKIKKL-PETLCELYNLE 618 (938)
Q Consensus 541 r~L~l~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~n~~~~~lp~-~~~~l~~L~~L~L~~~~i~~l-p~~i~~l~~L~ 618 (938)
+++.++++.+. .++..+ ...|++|+|++|.+....+. .++.+++|++|+|++|.|+.+ |..|.++++|+
T Consensus 11 ~~l~~s~~~l~------~ip~~~---~~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~ 81 (192)
T 1w8a_A 11 TTVDCTGRGLK------EIPRDI---PLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQ 81 (192)
T ss_dssp TEEECTTSCCS------SCCSCC---CTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCC
T ss_pred CEEEcCCCCcC------cCccCC---CCCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCC
Confidence 56777766642 222211 23777888888874333332 377788888888888887765 56777888888
Q ss_pred EEEcCCCCCcccccccccccCccceeecCCCcccccCCccCCCCCCCcccCeeEecCCC
Q 002308 619 KLDISGCSDLRELPKGIGKLINMKHLLNSGTRSLRYMPVGIGRLTGLRTLGEFHVSAGG 677 (938)
Q Consensus 619 ~L~l~~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~~~~ 677 (938)
+|++++|.+....|..+..+++|++|++++|.+....|..+..+++|+.|++.+|.+..
T Consensus 82 ~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c 140 (192)
T 1w8a_A 82 ELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNC 140 (192)
T ss_dssp EEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCC
T ss_pred EEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccC
Confidence 88888887444445557777888888888876666667777777777777777776654
No 142
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.21 E-value=3.1e-11 Score=118.36 Aligned_cols=108 Identities=17% Similarity=0.143 Sum_probs=69.1
Q ss_pred CCeeEEecCCCCCCcccCccccccCCCCeeeecCCccccccc-cccCCCCccEEEcCCCCCcccccccccccCccceeec
Q 002308 568 TSLRALDFPSFYLPLEIPRNIEKLVHLRYLNLSDQKIKKLPE-TLCELYNLEKLDISGCSDLRELPKGIGKLINMKHLLN 646 (938)
Q Consensus 568 ~~Lr~L~L~~n~~~~~lp~~~~~l~~L~~L~L~~~~i~~lp~-~i~~l~~L~~L~l~~~~~l~~lp~~i~~l~~L~~L~l 646 (938)
+.|++|+|++|. +..+|..|..+++|++|+|++|.|+.++. .|.++++|++|++++|.+....|..|..+++|++|++
T Consensus 31 ~~l~~L~L~~n~-i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L 109 (193)
T 2wfh_A 31 RDVTELYLDGNQ-FTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSL 109 (193)
T ss_dssp TTCCEEECCSSC-CCSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEEC
T ss_pred CCCCEEECCCCc-CchhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEeCHHHhCCCCCCCEEEC
Confidence 467777777776 44566667777777777777777776553 4677777777777777644434445667777777777
Q ss_pred CCCcccccCCccCCCCCCCcccCeeEecCC
Q 002308 647 SGTRSLRYMPVGIGRLTGLRTLGEFHVSAG 676 (938)
Q Consensus 647 ~~~~~~~~~p~~l~~l~~L~~L~l~~~~~~ 676 (938)
++|.+....+..+..+++|+.|++.+|.+.
T Consensus 110 ~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 139 (193)
T 2wfh_A 110 HGNDISVVPEGAFNDLSALSHLAIGANPLY 139 (193)
T ss_dssp CSSCCCBCCTTTTTTCTTCCEEECCSSCEE
T ss_pred CCCCCCeeChhhhhcCccccEEEeCCCCee
Confidence 777444333334566666666666666543
No 143
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.18 E-value=1.9e-11 Score=118.25 Aligned_cols=133 Identities=14% Similarity=0.226 Sum_probs=101.4
Q ss_pred hccCCCeeEEecCCCCCCcccCccccccC-CCCeeeecCCccccccccccCCCCccEEEcCCCCCcccccccc-cccCcc
Q 002308 564 FRESTSLRALDFPSFYLPLEIPRNIEKLV-HLRYLNLSDQKIKKLPETLCELYNLEKLDISGCSDLRELPKGI-GKLINM 641 (938)
Q Consensus 564 ~~~~~~Lr~L~L~~n~~~~~lp~~~~~l~-~L~~L~L~~~~i~~lp~~i~~l~~L~~L~l~~~~~l~~lp~~i-~~l~~L 641 (938)
+..+++|++|++++|.+ ..+|. +..+. +|++|++++|.++.+ ..+..+++|++|++++|. +..+|..+ ..+++|
T Consensus 15 ~~~~~~L~~L~l~~n~l-~~i~~-~~~~~~~L~~L~Ls~N~l~~~-~~l~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L 90 (176)
T 1a9n_A 15 YTNAVRDRELDLRGYKI-PVIEN-LGATLDQFDAIDFSDNEIRKL-DGFPLLRRLKTLLVNNNR-ICRIGEGLDQALPDL 90 (176)
T ss_dssp EECTTSCEEEECTTSCC-CSCCC-GGGGTTCCSEEECCSSCCCEE-CCCCCCSSCCEEECCSSC-CCEECSCHHHHCTTC
T ss_pred cCCcCCceEEEeeCCCC-chhHH-hhhcCCCCCEEECCCCCCCcc-cccccCCCCCEEECCCCc-ccccCcchhhcCCCC
Confidence 56788999999999994 45664 55555 999999999999988 679999999999999998 56677555 899999
Q ss_pred ceeecCCCcccccCCc--cCCCCCCCcccCeeEecCCCCCCCCcccccccccccccCcceeec
Q 002308 642 KHLLNSGTRSLRYMPV--GIGRLTGLRTLGEFHVSAGGGVDGSKACRLESLKNLEHLQVCCIR 702 (938)
Q Consensus 642 ~~L~l~~~~~~~~~p~--~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~ 702 (938)
++|++++|.+ ..+|. .+..+++|+.|++++|.+... +..-...+..+++|+.|++..|.
T Consensus 91 ~~L~L~~N~i-~~~~~~~~l~~l~~L~~L~l~~N~i~~~-~~~~~~~~~~l~~L~~Ld~~~n~ 151 (176)
T 1a9n_A 91 TELILTNNSL-VELGDLDPLASLKSLTYLCILRNPVTNK-KHYRLYVIYKVPQVRVLDFQKVK 151 (176)
T ss_dssp CEEECCSCCC-CCGGGGGGGGGCTTCCEEECCSSGGGGS-TTHHHHHHHHCTTCSEETTEECC
T ss_pred CEEECCCCcC-CcchhhHhhhcCCCCCEEEecCCCCCCc-HhHHHHHHHHCCccceeCCCcCC
Confidence 9999999955 55665 678888888888888876531 11000125566677777766654
No 144
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.17 E-value=3.6e-11 Score=129.38 Aligned_cols=290 Identities=15% Similarity=0.107 Sum_probs=151.2
Q ss_pred cCceeEEeccCCCCCCCCchhhHHHHHhcc-CCCeeEEecCCCCCCcccCccccccCCCCeeeecCCccccccccccC--
Q 002308 537 AKRIRSLLIEWPEFGHSSLNGEILEELFRE-STSLRALDFPSFYLPLEIPRNIEKLVHLRYLNLSDQKIKKLPETLCE-- 613 (938)
Q Consensus 537 ~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~-~~~Lr~L~L~~n~~~~~lp~~~~~l~~L~~L~L~~~~i~~lp~~i~~-- 613 (938)
+++++.|.+.++- ...-... +.. +++|++|||++|.+. .....-+.++.++++.+..+.|.. ..|.+
T Consensus 24 ~~~l~~L~l~g~i------~~~~~~~-l~~~l~~L~~LdLs~n~i~-~~~~~~~~~~~~~~~~~~~~~I~~--~aF~~~~ 93 (329)
T 3sb4_A 24 ANSITHLTLTGKL------NAEDFRH-LRDEFPSLKVLDISNAEIK-MYSGKAGTYPNGKFYIYMANFVPA--YAFSNVV 93 (329)
T ss_dssp HHHCSEEEEEEEE------CHHHHHH-HHHSCTTCCEEEEEEEEEC-CEEESSSSSGGGCCEEECTTEECT--TTTEEEE
T ss_pred hCceeEEEEeccc------cHHHHHH-HHHhhccCeEEecCcceeE-EecCccccccccccccccccccCH--HHhcccc
Confidence 5667777776542 1111222 333 788999999998844 111111222335666666653321 23555
Q ss_pred ------CCCccEEEcCCCCCccccc-ccccccCccceeecCCCcccccCCccCCCCCCCcccCeeEecCCCCCCCCcccc
Q 002308 614 ------LYNLEKLDISGCSDLRELP-KGIGKLINMKHLLNSGTRSLRYMPVGIGRLTGLRTLGEFHVSAGGGVDGSKACR 686 (938)
Q Consensus 614 ------l~~L~~L~l~~~~~l~~lp-~~i~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~ 686 (938)
+++|+.|++.+ . +..++ ..|..+++|+.|++.+|......+..|..+.++..+....+..
T Consensus 94 ~~~~~g~~~L~~l~L~~-~-i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~----------- 160 (329)
T 3sb4_A 94 NGVTKGKQTLEKVILSE-K-IKNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDA----------- 160 (329)
T ss_dssp TTEEEECTTCCC-CBCT-T-CCEECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHH-----------
T ss_pred cccccccCCCcEEECCc-c-ccchhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhh-----------
Confidence 88888888887 4 44444 4577888888888887755544444565555554443321100
Q ss_pred cccccccccCcceeecCcCCCCChhhhhhhhccCCCcCC-ceEEEEecCCCCCCCCCccchHHHHhhCCCCCCCCeEEEe
Q 002308 687 LESLKNLEHLQVCCIRRLGDVSDVGEAKLLELDKKKYLS-RLRLEFDKKGGGGGRRKNEDDQLLLEALQPPLNLKELEIH 765 (938)
Q Consensus 687 l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~~~~L~-~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~ 765 (938)
......+... .+..+..|+ .+.+.. ... ....+...-..+.++..+.+.
T Consensus 161 ~~~~~~i~~~--------------------~f~~~~~L~~~i~~~~--~~~--------l~~~~~~~~~~~~~~~~l~~~ 210 (329)
T 3sb4_A 161 YRFKNRWEHF--------------------AFIEGEPLETTIQVGA--MGK--------LEDEIMKAGLQPRDINFLTIE 210 (329)
T ss_dssp HHTSTTTTTS--------------------CEEESCCCEEEEEECT--TCC--------HHHHHHHTTCCGGGCSEEEEE
T ss_pred hhcccccccc--------------------ccccccccceeEEecC--CCc--------HHHHHhhcccCccccceEEEe
Confidence 0000000000 112222222 111110 000 011122222234456666665
Q ss_pred eecCCCCCCCchhccCCCCEEEEecCCCCCcCCC-CCCCCccceeecccccCceEeCcccccCCCCCCCCCCCCcccccC
Q 002308 766 YYGGNTVFPSWMASLTNLKSLDLCFCENCEQLPP-LGKLPSLEQLFISYMSSVKRVGDEFLGVESDRHDSSSSSSVIIAF 844 (938)
Q Consensus 766 ~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~l~~-l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~ 844 (938)
++............+++|+.|+|++|.+....+. |.+|++|+.|+|.+| ++.++...+. ++
T Consensus 211 ~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n--i~~I~~~aF~----------------~~ 272 (329)
T 3sb4_A 211 GKLDNADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN--LKTIGQRVFS----------------NC 272 (329)
T ss_dssp ECCCHHHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT--CCEECTTTTT----------------TC
T ss_pred eeecHHHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc--cceehHHHhh----------------CC
Confidence 5422110111111367777777777754433333 777778888877775 6666655442 45
Q ss_pred Cccc-eeeccccccccccccccccccccccccccccceecccccccccCCCC-CCCCCCCcCEEE
Q 002308 845 PKLK-SLSIFEMEELEEWDYGITRTGNTFINIMPRLSSLTINYCSKLKALPD-HIHQTTTLKELR 907 (938)
Q Consensus 845 ~~L~-~L~l~~~~~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~lp~-~l~~l~~L~~L~ 907 (938)
++|+ .+.+.+ +++.+. ...|..+++|+.|++.++ .++.++. .+.++++|+.|+
T Consensus 273 ~~L~~~l~l~~--~l~~I~-------~~aF~~c~~L~~l~l~~n-~i~~I~~~aF~~~~~L~~ly 327 (329)
T 3sb4_A 273 GRLAGTLELPA--SVTAIE-------FGAFMGCDNLRYVLATGD-KITTLGDELFGNGVPSKLIY 327 (329)
T ss_dssp TTCCEEEEECT--TCCEEC-------TTTTTTCTTEEEEEECSS-CCCEECTTTTCTTCCCCEEE
T ss_pred hhccEEEEEcc--cceEEc-------hhhhhCCccCCEEEeCCC-ccCccchhhhcCCcchhhhc
Confidence 6676 666654 343333 223557888999998774 5777765 567888998876
No 145
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.16 E-value=8.7e-11 Score=115.12 Aligned_cols=125 Identities=15% Similarity=0.220 Sum_probs=101.7
Q ss_pred cceEEEEccCCCcCcccccccCceeEEeccCCCCCCCCchhhHHHHHhccCCCeeEEecCCCCCCcccCccccccCCCCe
Q 002308 517 VRHLMLIMGKESTFPISTCRAKRIRSLLIEWPEFGHSSLNGEILEELFRESTSLRALDFPSFYLPLEIPRNIEKLVHLRY 596 (938)
Q Consensus 517 ~r~l~l~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~n~~~~~lp~~~~~l~~L~~ 596 (938)
-+.++++++.+..+|..+ .++|+.|.+.+|.+. .++ ..|..+++|++|+|++|.+....+..|..+++|++
T Consensus 12 ~~~l~~~~~~l~~ip~~~--~~~l~~L~L~~n~i~------~ip-~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~ 82 (193)
T 2wfh_A 12 DTVVRCSNKGLKVLPKGI--PRDVTELYLDGNQFT------LVP-KELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLT 82 (193)
T ss_dssp TTEEECTTSCCSSCCSCC--CTTCCEEECCSSCCC------SCC-GGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred CCEEEcCCCCCCcCCCCC--CCCCCEEECCCCcCc------hhH-HHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCE
Confidence 356777777777777654 368999999998863 222 34888999999999999966666678999999999
Q ss_pred eeecCCccccccc-cccCCCCccEEEcCCCCCcccccc-cccccCccceeecCCCcc
Q 002308 597 LNLSDQKIKKLPE-TLCELYNLEKLDISGCSDLRELPK-GIGKLINMKHLLNSGTRS 651 (938)
Q Consensus 597 L~L~~~~i~~lp~-~i~~l~~L~~L~l~~~~~l~~lp~-~i~~l~~L~~L~l~~~~~ 651 (938)
|+|++|.|+.+|. .|..+++|++|+|++|. +..+|. .+..+++|++|++++|..
T Consensus 83 L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N~~ 138 (193)
T 2wfh_A 83 LILSYNRLRCIPPRTFDGLKSLRLLSLHGND-ISVVPEGAFNDLSALSHLAIGANPL 138 (193)
T ss_dssp EECCSSCCCBCCTTTTTTCTTCCEEECCSSC-CCBCCTTTTTTCTTCCEEECCSSCE
T ss_pred EECCCCccCEeCHHHhCCCCCCCEEECCCCC-CCeeChhhhhcCccccEEEeCCCCe
Confidence 9999999997775 68999999999999998 555655 588899999999999854
No 146
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.14 E-value=8e-11 Score=113.98 Aligned_cols=123 Identities=18% Similarity=0.284 Sum_probs=52.4
Q ss_pred ceEEEEccCCCcCcccccccCceeEEeccCCCCCCCCchhhHHHHHhccCCCeeEEecCCCCCCcccCccccccCCCCee
Q 002308 518 RHLMLIMGKESTFPISTCRAKRIRSLLIEWPEFGHSSLNGEILEELFRESTSLRALDFPSFYLPLEIPRNIEKLVHLRYL 597 (938)
Q Consensus 518 r~l~l~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~n~~~~~lp~~~~~l~~L~~L 597 (938)
+.+.+.++.+..+|..+ .++|+.|.+.+|.+. .+++..|..+++|++|+|++|.+....+..++.+++|++|
T Consensus 10 ~~l~~~~~~l~~~p~~~--~~~l~~L~l~~n~l~------~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 81 (177)
T 2o6r_A 10 TEIRCNSKGLTSVPTGI--PSSATRLELESNKLQ------SLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTIL 81 (177)
T ss_dssp TEEECCSSCCSSCCTTC--CTTCSEEECCSSCCC------CCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred CEEEecCCCCccCCCCC--CCCCcEEEeCCCccc------EeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEE
Confidence 34444444444443322 134445544444431 1122223444455555555554322222234444455555
Q ss_pred eecCCcccccccc-ccCCCCccEEEcCCCCCccccccc-ccccCccceeecCCC
Q 002308 598 NLSDQKIKKLPET-LCELYNLEKLDISGCSDLRELPKG-IGKLINMKHLLNSGT 649 (938)
Q Consensus 598 ~L~~~~i~~lp~~-i~~l~~L~~L~l~~~~~l~~lp~~-i~~l~~L~~L~l~~~ 649 (938)
+|++|.++.+|.. +..+++|++|++++|. +..+|.. +..+++|++|++++|
T Consensus 82 ~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~-l~~~~~~~~~~l~~L~~L~l~~N 134 (177)
T 2o6r_A 82 YLHENKLQSLPNGVFDKLTQLKELALDTNQ-LKSVPDGIFDRLTSLQKIWLHTN 134 (177)
T ss_dssp ECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CSCCCTTTTTTCTTCCEEECCSS
T ss_pred ECCCCCccccCHHHhhCCcccCEEECcCCc-ceEeCHHHhcCCcccCEEEecCC
Confidence 5555544444432 3444455555555444 2233332 234444444444444
No 147
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.06 E-value=1.8e-09 Score=115.94 Aligned_cols=186 Identities=14% Similarity=0.153 Sum_probs=117.8
Q ss_pred CCceecchhhHHHHHHHHhccCcccCCCeEEEEEEccCCChHHHHHHHHhhhhhhhccc-CeEEEEEeCCCCCHHHHHHH
Q 002308 149 EEEICGRVGERNALLSMLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNHVEVKREF-DKTLWVCVSETFDEFRIAKA 227 (938)
Q Consensus 149 ~~~~vGr~~~~~~l~~~l~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f-~~~~wv~~~~~~~~~~~~~~ 227 (938)
...++|++..++.+..++.... ...+.|+|++|+|||++|+.+++... ...+ ..+++++.+.......+ ++
T Consensus 20 ~~~~~g~~~~~~~l~~~l~~~~------~~~~ll~G~~G~GKt~la~~l~~~l~-~~~~~~~~~~~~~~~~~~~~~i-~~ 91 (323)
T 1sxj_B 20 LSDIVGNKETIDRLQQIAKDGN------MPHMIISGMPGIGKTTSVHCLAHELL-GRSYADGVLELNASDDRGIDVV-RN 91 (323)
T ss_dssp GGGCCSCTHHHHHHHHHHHSCC------CCCEEEECSTTSSHHHHHHHHHHHHH-GGGHHHHEEEECTTSCCSHHHH-HT
T ss_pred HHHHHCCHHHHHHHHHHHHcCC------CCeEEEECcCCCCHHHHHHHHHHHhc-CCcccCCEEEecCccccChHHH-HH
Confidence 3569999999999999987432 22389999999999999999998521 1112 22444444433232221 22
Q ss_pred HHHHhcCCCCCCCcHHHHHHHHHHHh-cCceEEEEEecCCCCCccChhHHHHhhhCCCCCcEEEEEcCChhh-hhh-hcC
Q 002308 228 MLEALTGSTSNLNALQSLLISIDESI-AGKRFLLVLDDVWDGDYIKWEPFYRCLKKGLHGSKILITTRKESI-VSM-MRS 304 (938)
Q Consensus 228 i~~~l~~~~~~~~~~~~~~~~l~~~l-~~~~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtr~~~v-~~~-~~~ 304 (938)
++..+..... .+ .+++.++|+||++......++.+...+.....++.+|+||+.... ... ...
T Consensus 92 ~~~~~~~~~~--------------~~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~il~~~~~~~l~~~l~sr 157 (323)
T 1sxj_B 92 QIKHFAQKKL--------------HLPPGKHKIVILDEADSMTAGAQQALRRTMELYSNSTRFAFACNQSNKIIEPLQSQ 157 (323)
T ss_dssp HHHHHHHBCC--------------CCCTTCCEEEEEESGGGSCHHHHHTTHHHHHHTTTTEEEEEEESCGGGSCHHHHTT
T ss_pred HHHHHHhccc--------------cCCCCCceEEEEECcccCCHHHHHHHHHHHhccCCCceEEEEeCChhhchhHHHhh
Confidence 2222210000 01 346889999999876555566677777665667888888876432 111 233
Q ss_pred CceEeCCCCChHHHHHHHHHhhcCCCCCchhhHHHHHHHHHHHhcCCChhH-HHHHH
Q 002308 305 TDIISIEELAEEECWVLFKRLAFFGRSTEECEKLEQIGQRIARKCKGLPLA-AKTMG 360 (938)
Q Consensus 305 ~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pla-i~~~~ 360 (938)
...+.+.+++.++..+++...+...+.... .+....+++.++|.|.. +..+.
T Consensus 158 ~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~----~~~~~~l~~~~~G~~r~a~~~l~ 210 (323)
T 1sxj_B 158 CAILRYSKLSDEDVLKRLLQIIKLEDVKYT----NDGLEAIIFTAEGDMRQAINNLQ 210 (323)
T ss_dssp SEEEECCCCCHHHHHHHHHHHHHHHTCCBC----HHHHHHHHHHHTTCHHHHHHHHH
T ss_pred ceEEeecCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCCHHHHHHHHH
Confidence 458999999999999999887642221111 23467899999999954 44443
No 148
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.05 E-value=9.4e-13 Score=130.25 Aligned_cols=82 Identities=27% Similarity=0.309 Sum_probs=39.6
Q ss_pred hccCCCeeEEecCCCCCCcccCccccccCCCCeeeecCCccccccccccCCCCccEEEcCCCCCcccccccccccCccce
Q 002308 564 FRESTSLRALDFPSFYLPLEIPRNIEKLVHLRYLNLSDQKIKKLPETLCELYNLEKLDISGCSDLRELPKGIGKLINMKH 643 (938)
Q Consensus 564 ~~~~~~Lr~L~L~~n~~~~~lp~~~~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~l~~~~~l~~lp~~i~~l~~L~~ 643 (938)
+..+++|++|+|++|. ...+| .++.+++|++|++++|.++.+|..+..+++|++|++++|. +..+| .+..+++|++
T Consensus 44 ~~~l~~L~~L~ls~n~-l~~l~-~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L~~N~-l~~l~-~~~~l~~L~~ 119 (198)
T 1ds9_A 44 LSTLKACKHLALSTNN-IEKIS-SLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYNQ-IASLS-GIEKLVNLRV 119 (198)
T ss_dssp HHHTTTCSEEECSEEE-ESCCC-CHHHHTTCCEEEEEEEEECSCSSHHHHHHHCSEEEEEEEE-CCCHH-HHHHHHHSSE
T ss_pred HhcCCCCCEEECCCCC-Ccccc-ccccCCCCCEEECCCCCcccccchhhcCCcCCEEECcCCc-CCcCC-ccccCCCCCE
Confidence 4445555555555554 22244 4445555555555555555555444444555555555554 33333 3444455555
Q ss_pred eecCCC
Q 002308 644 LLNSGT 649 (938)
Q Consensus 644 L~l~~~ 649 (938)
|++++|
T Consensus 120 L~l~~N 125 (198)
T 1ds9_A 120 LYMSNN 125 (198)
T ss_dssp EEESEE
T ss_pred EECCCC
Confidence 555544
No 149
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.04 E-value=8.7e-10 Score=106.59 Aligned_cols=127 Identities=23% Similarity=0.226 Sum_probs=92.2
Q ss_pred eeEEeccCCCCCCCCchhhHHHHHhccCCCeeEEecCCCCCCcccCccccccCCCCeeeecCCcccccccc-ccCCCCcc
Q 002308 540 IRSLLIEWPEFGHSSLNGEILEELFRESTSLRALDFPSFYLPLEIPRNIEKLVHLRYLNLSDQKIKKLPET-LCELYNLE 618 (938)
Q Consensus 540 Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~n~~~~~lp~~~~~l~~L~~L~L~~~~i~~lp~~-i~~l~~L~ 618 (938)
.+.+.+.++.+. .++. .-.++|+.|++++|.+....+..++.+++|++|++++|.++.+|.. +..+++|+
T Consensus 9 ~~~l~~~~~~l~------~~p~---~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~ 79 (177)
T 2o6r_A 9 GTEIRCNSKGLT------SVPT---GIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLT 79 (177)
T ss_dssp TTEEECCSSCCS------SCCT---TCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred CCEEEecCCCCc------cCCC---CCCCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccC
Confidence 355666666542 1221 1236889999999985544455678889999999999999887764 68899999
Q ss_pred EEEcCCCCCcccccc-cccccCccceeecCCCcccccCCcc-CCCCCCCcccCeeEecCCC
Q 002308 619 KLDISGCSDLRELPK-GIGKLINMKHLLNSGTRSLRYMPVG-IGRLTGLRTLGEFHVSAGG 677 (938)
Q Consensus 619 ~L~l~~~~~l~~lp~-~i~~l~~L~~L~l~~~~~~~~~p~~-l~~l~~L~~L~l~~~~~~~ 677 (938)
+|++++|. +..+|. .+..+++|++|++++|.+. .+|.. +..+++|+.|++.+|.+..
T Consensus 80 ~L~l~~N~-l~~~~~~~~~~l~~L~~L~l~~N~l~-~~~~~~~~~l~~L~~L~l~~N~~~~ 138 (177)
T 2o6r_A 80 ILYLHENK-LQSLPNGVFDKLTQLKELALDTNQLK-SVPDGIFDRLTSLQKIWLHTNPWDC 138 (177)
T ss_dssp EEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCS-CCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred EEECCCCC-ccccCHHHhhCCcccCEEECcCCcce-EeCHHHhcCCcccCEEEecCCCeec
Confidence 99999988 444444 4678899999999988655 44444 5778888888888877654
No 150
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.00 E-value=3.5e-12 Score=126.10 Aligned_cols=143 Identities=18% Similarity=0.148 Sum_probs=111.9
Q ss_pred ccceEEEEcc--CCCcCcccccccCceeEEeccCCCCCCCCchhhHHHHHhccCCCeeEEecCCCCCCcccCccccccCC
Q 002308 516 KVRHLMLIMG--KESTFPISTCRAKRIRSLLIEWPEFGHSSLNGEILEELFRESTSLRALDFPSFYLPLEIPRNIEKLVH 593 (938)
Q Consensus 516 ~~r~l~l~~~--~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~n~~~~~lp~~~~~l~~ 593 (938)
.++...+.+. .++.++..+..+++|+.|++++|.+.. ++ .+..+++|++|++++|. ...+|..++.+++
T Consensus 24 ~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~------l~--~~~~l~~L~~L~l~~n~-l~~l~~~~~~~~~ 94 (198)
T 1ds9_A 24 EAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK------IS--SLSGMENLRILSLGRNL-IKKIENLDAVADT 94 (198)
T ss_dssp TCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESC------CC--CHHHHTTCCEEEEEEEE-ECSCSSHHHHHHH
T ss_pred chheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcc------cc--ccccCCCCCEEECCCCC-cccccchhhcCCc
Confidence 3444444433 445566688899999999999988633 22 36778999999999999 5578888888999
Q ss_pred CCeeeecCCccccccccccCCCCccEEEcCCCCCcccccc--cccccCccceeecCCCcccccCCcc----------CCC
Q 002308 594 LRYLNLSDQKIKKLPETLCELYNLEKLDISGCSDLRELPK--GIGKLINMKHLLNSGTRSLRYMPVG----------IGR 661 (938)
Q Consensus 594 L~~L~L~~~~i~~lp~~i~~l~~L~~L~l~~~~~l~~lp~--~i~~l~~L~~L~l~~~~~~~~~p~~----------l~~ 661 (938)
|++|++++|.++.+| .+..+++|++|++++|. +..+|. .+..+++|++|++++|......|.. +..
T Consensus 95 L~~L~L~~N~l~~l~-~~~~l~~L~~L~l~~N~-i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~ 172 (198)
T 1ds9_A 95 LEELWISYNQIASLS-GIEKLVNLRVLYMSNNK-ITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKR 172 (198)
T ss_dssp CSEEEEEEEECCCHH-HHHHHHHSSEEEESEEE-CCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHH
T ss_pred CCEEECcCCcCCcCC-ccccCCCCCEEECCCCc-CCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHh
Confidence 999999999999988 68999999999999998 555553 6889999999999999665554432 556
Q ss_pred CCCCcccC
Q 002308 662 LTGLRTLG 669 (938)
Q Consensus 662 l~~L~~L~ 669 (938)
+++|+.|+
T Consensus 173 l~~L~~Ld 180 (198)
T 1ds9_A 173 LPNLKKLD 180 (198)
T ss_dssp CSSCSEEC
T ss_pred CCCcEEEC
Confidence 66666665
No 151
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=98.95 E-value=1.6e-09 Score=103.58 Aligned_cols=102 Identities=22% Similarity=0.253 Sum_probs=55.9
Q ss_pred eEEecCCCCCCcccCccccccCCCCeeeecCCccccc-cccccCCCCccEEEcCCCCCcccccc-cccccCccceeecCC
Q 002308 571 RALDFPSFYLPLEIPRNIEKLVHLRYLNLSDQKIKKL-PETLCELYNLEKLDISGCSDLRELPK-GIGKLINMKHLLNSG 648 (938)
Q Consensus 571 r~L~L~~n~~~~~lp~~~~~l~~L~~L~L~~~~i~~l-p~~i~~l~~L~~L~l~~~~~l~~lp~-~i~~l~~L~~L~l~~ 648 (938)
++|++++|. ...+|..+. .+|++|+|++|.|+.+ |..|.++++|++|+|++|. +..+|. .+..+++|++|++++
T Consensus 12 ~~l~~s~n~-l~~ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~-l~~l~~~~f~~l~~L~~L~L~~ 87 (170)
T 3g39_A 12 TTVDCSGKS-LASVPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQ-LTVLPAGVFDKLTQLTQLSLND 87 (170)
T ss_dssp TEEECTTSC-CSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSC-CCCCCTTTTTTCTTCCEEECCS
T ss_pred CEEEeCCCC-cCccCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCC-cCccChhhccCCCCCCEEECCC
Confidence 456666665 344554442 5566666666666655 3445666666666666665 333333 345666666666666
Q ss_pred CcccccCCccCCCCCCCcccCeeEecCC
Q 002308 649 TRSLRYMPVGIGRLTGLRTLGEFHVSAG 676 (938)
Q Consensus 649 ~~~~~~~p~~l~~l~~L~~L~l~~~~~~ 676 (938)
|.+....+..+..+++|+.|++++|.+.
T Consensus 88 N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 115 (170)
T 3g39_A 88 NQLKSIPRGAFDNLKSLTHIWLLNNPWD 115 (170)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred CccCEeCHHHhcCCCCCCEEEeCCCCCC
Confidence 6433322333556666666666665544
No 152
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=98.92 E-value=2.8e-08 Score=103.43 Aligned_cols=172 Identities=10% Similarity=-0.013 Sum_probs=110.2
Q ss_pred ceecchhhHHHHHHHHhccCcccCCCeEEEEEEccCCChHHHHHHHHhhhhhhhc------ccCeEEEEEeCCCCCHHHH
Q 002308 151 EICGRVGERNALLSMLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNHVEVKR------EFDKTLWVCVSETFDEFRI 224 (938)
Q Consensus 151 ~~vGr~~~~~~l~~~l~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~------~f~~~~wv~~~~~~~~~~~ 224 (938)
.+.||++|++++...|...-. +.....+.|+|++|+|||++|+.|++...... .| ..+++++....+...+
T Consensus 21 ~L~~Re~E~~~i~~~L~~~i~--~~~~~~lli~GpPGTGKT~~v~~v~~~L~~~~~~~~~~~~-~~v~INc~~~~t~~~~ 97 (318)
T 3te6_A 21 LLKSQVEDFTRIFLPIYDSLM--SSQNKLFYITNADDSTKFQLVNDVMDELITSSARKELPIF-DYIHIDALELAGMDAL 97 (318)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH--TTCCCEEEEECCCSHHHHHHHHHHHHHHHHTTTTTSSCCE-EEEEEETTCCC--HHH
T ss_pred ccCCHHHHHHHHHHHHHHHhc--CCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhhhccCCce-EEEEEeccccCCHHHH
Confidence 488999999999988875433 34667889999999999999999999642211 12 3567777787888899
Q ss_pred HHHHHHHhcCCCCCC-CcHHHHHHHHHHH--hcCceEEEEEecCCCCCccChhHHHHhhhCC-CCCc--EEEEEcCChhh
Q 002308 225 AKAMLEALTGSTSNL-NALQSLLISIDES--IAGKRFLLVLDDVWDGDYIKWEPFYRCLKKG-LHGS--KILITTRKESI 298 (938)
Q Consensus 225 ~~~i~~~l~~~~~~~-~~~~~~~~~l~~~--l~~~~~LlVlDdv~~~~~~~~~~l~~~l~~~-~~gs--~ilvTtr~~~v 298 (938)
+..|++++.+..... ...+.+...+... -.++++++|||+++... .-+.+...+.+. ...+ .||.++...+.
T Consensus 98 ~~~I~~~L~g~~~~~~~~~~~L~~~f~~~~~~~~~~~ii~lDE~d~l~--~q~~L~~l~~~~~~~~s~~~vI~i~n~~d~ 175 (318)
T 3te6_A 98 YEKIWFAISKENLCGDISLEALNFYITNVPKAKKRKTLILIQNPENLL--SEKILQYFEKWISSKNSKLSIICVGGHNVT 175 (318)
T ss_dssp HHHHHHHHSCCC--CCCCHHHHHHHHHHSCGGGSCEEEEEEECCSSSC--CTHHHHHHHHHHHCSSCCEEEEEECCSSCC
T ss_pred HHHHHHHhcCCCCCchHHHHHHHHHHHHhhhccCCceEEEEecHHHhh--cchHHHHHHhcccccCCcEEEEEEecCccc
Confidence 999999997543222 2223333333321 24678999999997654 334455554321 1222 33444433221
Q ss_pred -----hhhh---cCCceEeCCCCChHHHHHHHHHhhc
Q 002308 299 -----VSMM---RSTDIISIEELAEEECWVLFKRLAF 327 (938)
Q Consensus 299 -----~~~~---~~~~~~~l~~L~~~~~~~lf~~~~~ 327 (938)
.... -....+.+.+++.++-.+++..++.
T Consensus 176 ~~~~L~~~v~SR~~~~~i~F~pYt~~el~~Il~~Rl~ 212 (318)
T 3te6_A 176 IREQINIMPSLKAHFTEIKLNKVDKNELQQMIITRLK 212 (318)
T ss_dssp CHHHHHTCHHHHTTEEEEECCCCCHHHHHHHHHHHHH
T ss_pred chhhcchhhhccCCceEEEeCCCCHHHHHHHHHHHHH
Confidence 1111 1124789999999999999988764
No 153
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=98.92 E-value=2.6e-09 Score=102.54 Aligned_cols=81 Identities=22% Similarity=0.386 Sum_probs=39.7
Q ss_pred CCeeEEecCCCCCCcccCccccccCCCCeeeecCCcccccccc-ccCCCCccEEEcCCCCCccccccc-ccccCccceee
Q 002308 568 TSLRALDFPSFYLPLEIPRNIEKLVHLRYLNLSDQKIKKLPET-LCELYNLEKLDISGCSDLRELPKG-IGKLINMKHLL 645 (938)
Q Consensus 568 ~~Lr~L~L~~n~~~~~lp~~~~~l~~L~~L~L~~~~i~~lp~~-i~~l~~L~~L~l~~~~~l~~lp~~-i~~l~~L~~L~ 645 (938)
++|++|+|++|.+.+..|..|+.+++|++|+|++|.|+.+|.. +.++++|++|+|++|. +..+|.. +..+++|++|+
T Consensus 33 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~-l~~l~~~~~~~l~~L~~L~ 111 (174)
T 2r9u_A 33 TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNH-LKSIPRGAFDNLKSLTHIY 111 (174)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCSEEE
T ss_pred CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCc-cceeCHHHhccccCCCEEE
Confidence 4455555555553333344455555555555555555555443 3455555555555554 3333332 44455555555
Q ss_pred cCCC
Q 002308 646 NSGT 649 (938)
Q Consensus 646 l~~~ 649 (938)
+++|
T Consensus 112 L~~N 115 (174)
T 2r9u_A 112 LYNN 115 (174)
T ss_dssp CCSS
T ss_pred eCCC
Confidence 5554
No 154
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=98.91 E-value=1.1e-09 Score=105.21 Aligned_cols=113 Identities=17% Similarity=0.157 Sum_probs=90.5
Q ss_pred ccceEEEEccCCCcCcccccccCceeEEeccCCCCCCCCchhhHHHHHhccCCCeeEEecCCCCCCcccCccccccCCCC
Q 002308 516 KVRHLMLIMGKESTFPISTCRAKRIRSLLIEWPEFGHSSLNGEILEELFRESTSLRALDFPSFYLPLEIPRNIEKLVHLR 595 (938)
Q Consensus 516 ~~r~l~l~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~n~~~~~lp~~~~~l~~L~ 595 (938)
..+.++++++.+..+|..+. ++|+.|++++|.+. .+++..|..+++|++|+|++|.+....+..|..+++|+
T Consensus 13 ~~~~l~~~~n~l~~iP~~~~--~~L~~L~Ls~N~l~------~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~ 84 (174)
T 2r9u_A 13 DQTLVNCQNIRLASVPAGIP--TDKQRLWLNNNQIT------KLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLT 84 (174)
T ss_dssp CSSEEECCSSCCSSCCSCCC--TTCSEEECCSSCCC------CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred CCcEEEeCCCCCCccCCCcC--CCCcEEEeCCCCcc------ccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhh
Confidence 34678888888888887664 89999999999863 33455588999999999999995543344578999999
Q ss_pred eeeecCCcccccccc-ccCCCCccEEEcCCCCCcccccccccc
Q 002308 596 YLNLSDQKIKKLPET-LCELYNLEKLDISGCSDLRELPKGIGK 637 (938)
Q Consensus 596 ~L~L~~~~i~~lp~~-i~~l~~L~~L~l~~~~~l~~lp~~i~~ 637 (938)
+|+|++|.|+.+|.. +..+++|++|++++|. +.-.|..+..
T Consensus 85 ~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~-~~c~~~~~~~ 126 (174)
T 2r9u_A 85 QLDLNDNHLKSIPRGAFDNLKSLTHIYLYNNP-WDCECRDIMY 126 (174)
T ss_dssp EEECCSSCCCCCCTTTTTTCTTCSEEECCSSC-BCTTBGGGHH
T ss_pred EEECCCCccceeCHHHhccccCCCEEEeCCCC-cccccccHHH
Confidence 999999999999876 8999999999999998 5445544433
No 155
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=98.90 E-value=1.5e-08 Score=108.85 Aligned_cols=187 Identities=14% Similarity=0.063 Sum_probs=117.1
Q ss_pred CCceecchhhHHHHHHHHhccCcccCCCeEEEEEEccCCChHHHHHHHHhhhhhhhccc-CeEEEEEeCCCCCHHHHHHH
Q 002308 149 EEEICGRVGERNALLSMLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNHVEVKREF-DKTLWVCVSETFDEFRIAKA 227 (938)
Q Consensus 149 ~~~~vGr~~~~~~l~~~l~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f-~~~~wv~~~~~~~~~~~~~~ 227 (938)
-..++|++..++.+..++... ....+.|+|++|+||||+|+.+++... ...+ ...+.+..+.......+ ..
T Consensus 24 ~~~~~g~~~~~~~l~~~l~~~------~~~~~ll~G~~G~GKT~la~~l~~~l~-~~~~~~~~~~~~~~~~~~~~~~-~~ 95 (327)
T 1iqp_A 24 LDDIVGQEHIVKRLKHYVKTG------SMPHLLFAGPPGVGKTTAALALARELF-GENWRHNFLELNASDERGINVI-RE 95 (327)
T ss_dssp TTTCCSCHHHHHHHHHHHHHT------CCCEEEEESCTTSSHHHHHHHHHHHHH-GGGHHHHEEEEETTCHHHHHTT-HH
T ss_pred HHHhhCCHHHHHHHHHHHHcC------CCCeEEEECcCCCCHHHHHHHHHHHhc-CCcccCceEEeeccccCchHHH-HH
Confidence 356999999999999988753 223489999999999999999998521 1111 12334443321111111 11
Q ss_pred HHHHhcCCCCCCCcHHHHHHHHHHHhcCceEEEEEecCCCCCccChhHHHHhhhCCCCCcEEEEEcCChhh-hhh-hcCC
Q 002308 228 MLEALTGSTSNLNALQSLLISIDESIAGKRFLLVLDDVWDGDYIKWEPFYRCLKKGLHGSKILITTRKESI-VSM-MRST 305 (938)
Q Consensus 228 i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtr~~~v-~~~-~~~~ 305 (938)
.+..+.... ....+++.++|+||++......+..+...+.....++++|+||..... ... ....
T Consensus 96 ~~~~~~~~~--------------~~~~~~~~vliiDe~~~l~~~~~~~L~~~le~~~~~~~~i~~~~~~~~l~~~l~sr~ 161 (327)
T 1iqp_A 96 KVKEFARTK--------------PIGGASFKIIFLDEADALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQSRC 161 (327)
T ss_dssp HHHHHHHSC--------------CGGGCSCEEEEEETGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHHTE
T ss_pred HHHHHHhhC--------------CcCCCCCeEEEEeCCCcCCHHHHHHHHHHHHhcCCCCeEEEEeCCccccCHHHHhhC
Confidence 111100000 001256789999999876655667777777766677888888876532 111 1223
Q ss_pred ceEeCCCCChHHHHHHHHHhhcCCCCCchhhHHHHHHHHHHHhcCCChhHHHHHHh
Q 002308 306 DIISIEELAEEECWVLFKRLAFFGRSTEECEKLEQIGQRIARKCKGLPLAAKTMGS 361 (938)
Q Consensus 306 ~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~~~~ 361 (938)
..+.+.+++.++..+++...+...+.... .+..+.|++.++|.|..+..+..
T Consensus 162 ~~~~~~~l~~~~~~~~l~~~~~~~~~~~~----~~~~~~l~~~~~g~~r~~~~~l~ 213 (327)
T 1iqp_A 162 AIFRFRPLRDEDIAKRLRYIAENEGLELT----EEGLQAILYIAEGDMRRAINILQ 213 (327)
T ss_dssp EEEECCCCCHHHHHHHHHHHHHTTTCEEC----HHHHHHHHHHHTTCHHHHHHHHH
T ss_pred cEEEecCCCHHHHHHHHHHHHHhcCCCCC----HHHHHHHHHHCCCCHHHHHHHHH
Confidence 47899999999999999887654332222 23467888999999986654443
No 156
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=98.86 E-value=2.5e-09 Score=102.24 Aligned_cols=83 Identities=19% Similarity=0.334 Sum_probs=60.2
Q ss_pred CCeeEEecCCCCCCcccCccccccCCCCeeeecCCcccccccc-ccCCCCccEEEcCCCCCcccccc-cccccCccceee
Q 002308 568 TSLRALDFPSFYLPLEIPRNIEKLVHLRYLNLSDQKIKKLPET-LCELYNLEKLDISGCSDLRELPK-GIGKLINMKHLL 645 (938)
Q Consensus 568 ~~Lr~L~L~~n~~~~~lp~~~~~l~~L~~L~L~~~~i~~lp~~-i~~l~~L~~L~l~~~~~l~~lp~-~i~~l~~L~~L~ 645 (938)
+.|++|+|++|.+.+..|..|+.+++|++|+|++|.|+.+|.. +..+++|++|+|++|. +..+|. .+..+++|++|+
T Consensus 30 ~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~ 108 (170)
T 3g39_A 30 TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQ-LKSIPRGAFDNLKSLTHIW 108 (170)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEE
T ss_pred CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCCc-cCEeCHHHhcCCCCCCEEE
Confidence 5677788888875555566777788888888888887777664 4778888888888877 444444 477778888888
Q ss_pred cCCCcc
Q 002308 646 NSGTRS 651 (938)
Q Consensus 646 l~~~~~ 651 (938)
+++|..
T Consensus 109 L~~N~~ 114 (170)
T 3g39_A 109 LLNNPW 114 (170)
T ss_dssp CCSSCB
T ss_pred eCCCCC
Confidence 877743
No 157
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=98.85 E-value=2e-08 Score=107.69 Aligned_cols=183 Identities=17% Similarity=0.135 Sum_probs=111.9
Q ss_pred CCceecchhhHHHHHHHHhccCcccCCCeEEEEEEccCCChHHHHHHHHhhhhhhhcccCeEEEEEeCCCCCHHHHHHHH
Q 002308 149 EEEICGRVGERNALLSMLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNHVEVKREFDKTLWVCVSETFDEFRIAKAM 228 (938)
Q Consensus 149 ~~~~vGr~~~~~~l~~~l~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i 228 (938)
-..++|++..++.+..++...... ......+.|+|++|+|||++|+.+++. ... ..++++++......++..
T Consensus 11 ~~~~ig~~~~~~~l~~~l~~~~~~-~~~~~~vll~G~~GtGKT~la~~i~~~--~~~---~~~~~~~~~~~~~~~l~~-- 82 (324)
T 1hqc_A 11 LDEYIGQERLKQKLRVYLEAAKAR-KEPLEHLLLFGPPGLGKTTLAHVIAHE--LGV---NLRVTSGPAIEKPGDLAA-- 82 (324)
T ss_dssp TTTCCSCHHHHHHHHHHHHHHHHH-CSCCCCCEEECCTTCCCHHHHHHHHHH--HTC---CEEEECTTTCCSHHHHHH--
T ss_pred HHHhhCHHHHHHHHHHHHHHHHcc-CCCCCcEEEECCCCCCHHHHHHHHHHH--hCC---CEEEEeccccCChHHHHH--
Confidence 357999999999988887632210 123457899999999999999999884 322 233444433222222111
Q ss_pred HHHhcCCCCCCCcHHHHHHHHHHHhcCceEEEEEecCCCCCccChhHHHHhhhCCC------------------CCcEEE
Q 002308 229 LEALTGSTSNLNALQSLLISIDESIAGKRFLLVLDDVWDGDYIKWEPFYRCLKKGL------------------HGSKIL 290 (938)
Q Consensus 229 ~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~~~~~~~l~~~l~~~~------------------~gs~il 290 (938)
.+... ..++.+|+||++..........+...+.... ++.++|
T Consensus 83 -------------------~l~~~-~~~~~~l~lDEi~~l~~~~~~~L~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~i 142 (324)
T 1hqc_A 83 -------------------ILANS-LEEGDILFIDEIHRLSRQAEEHLYPAMEDFVMDIVIGQGPAARTIRLELPRFTLI 142 (324)
T ss_dssp -------------------HHTTT-CCTTCEEEETTTTSCCHHHHHHHHHHHHHSEEEECCSSSSSCCCEEEECCCCEEE
T ss_pred -------------------HHHHh-ccCCCEEEEECCcccccchHHHHHHHHHhhhhHHhccccccccccccCCCCEEEE
Confidence 11110 1345689999997765444455555544321 235566
Q ss_pred EEcCChh-hhhhh-cC-CceEeCCCCChHHHHHHHHHhhcCCCCCchhhHHHHHHHHHHHhcCCChhHHHHHHhhh
Q 002308 291 ITTRKES-IVSMM-RS-TDIISIEELAEEECWVLFKRLAFFGRSTEECEKLEQIGQRIARKCKGLPLAAKTMGSLM 363 (938)
Q Consensus 291 vTtr~~~-v~~~~-~~-~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~~~~~l 363 (938)
.||.... +.... .. ...+.+.+++.++..+++...+........ .+..+.+++.++|.|..+..+...+
T Consensus 143 ~~t~~~~~~~~~l~~R~~~~i~l~~~~~~e~~~~l~~~~~~~~~~~~----~~~~~~l~~~~~G~~r~l~~~l~~~ 214 (324)
T 1hqc_A 143 GATTRPGLITAPLLSRFGIVEHLEYYTPEELAQGVMRDARLLGVRIT----EEAALEIGRRSRGTMRVAKRLFRRV 214 (324)
T ss_dssp EEESCCSSCSCSTTTTCSCEEECCCCCHHHHHHHHHHHHHTTTCCCC----HHHHHHHHHHSCSCHHHHHHHHHHH
T ss_pred EeCCCcccCCHHHHhcccEEEecCCCCHHHHHHHHHHHHHhcCCCCC----HHHHHHHHHHccCCHHHHHHHHHHH
Confidence 6665432 11111 11 257899999999999999887653332211 2346788999999998887665544
No 158
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.85 E-value=1.4e-08 Score=111.46 Aligned_cols=61 Identities=8% Similarity=0.012 Sum_probs=31.6
Q ss_pred hCCCCCCCCeEEEeeecCCCCCCCchhccCCCCEEEEecCCCCCcCC-CCCCCCccceeeccccc
Q 002308 752 ALQPPLNLKELEIHYYGGNTVFPSWMASLTNLKSLDLCFCENCEQLP-PLGKLPSLEQLFISYMS 815 (938)
Q Consensus 752 ~l~~~~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~l~-~l~~l~~L~~L~L~~~~ 815 (938)
.+..+++|+.+.+.+ .+...-...|..+++|+.|.|..+ +...-+ .|.++ +|+.+.+.+|.
T Consensus 295 aF~~c~~L~~l~l~~-~i~~I~~~aF~~c~~L~~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~n~ 356 (401)
T 4fdw_A 295 CLEGCPKLARFEIPE-SIRILGQGLLGGNRKVTQLTIPAN-VTQINFSAFNNT-GIKEVKVEGTT 356 (401)
T ss_dssp TTTTCTTCCEECCCT-TCCEECTTTTTTCCSCCEEEECTT-CCEECTTSSSSS-CCCEEEECCSS
T ss_pred HhhCCccCCeEEeCC-ceEEEhhhhhcCCCCccEEEECcc-ccEEcHHhCCCC-CCCEEEEcCCC
Confidence 455566666666652 233322334555666666666544 222111 15666 66666666654
No 159
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=98.84 E-value=1.7e-09 Score=116.34 Aligned_cols=92 Identities=12% Similarity=0.004 Sum_probs=61.9
Q ss_pred CCCcCCceEEEEecCCCCCCCCCccchHHHHhhCCCCCCCCeEEEeeecCCCCCCCchhccCCCC-EEEEecCCCCCcCC
Q 002308 720 KKKYLSRLRLEFDKKGGGGGRRKNEDDQLLLEALQPPLNLKELEIHYYGGNTVFPSWMASLTNLK-SLDLCFCENCEQLP 798 (938)
Q Consensus 720 ~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~p~~~~~l~~L~-~L~L~~~~~~~~l~ 798 (938)
.+++|+.++|+.|.+... -...|..+++|++|.+.++ +...-+..|..+++|+ .|+|.+ .+...-+
T Consensus 224 ~~~~L~~l~L~~n~i~~I-----------~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~ 290 (329)
T 3sb4_A 224 YMPNLVSLDISKTNATTI-----------PDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEF 290 (329)
T ss_dssp HCTTCCEEECTTBCCCEE-----------CTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECT
T ss_pred hcCCCeEEECCCCCccee-----------cHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEch
Confidence 367788888877665431 1235777788888888776 5553345677888888 888887 3333333
Q ss_pred C-CCCCCccceeecccccCceEeCcccc
Q 002308 799 P-LGKLPSLEQLFISYMSSVKRVGDEFL 825 (938)
Q Consensus 799 ~-l~~l~~L~~L~L~~~~~l~~~~~~~~ 825 (938)
. |.+|++|+.|++.+|. ++.++...+
T Consensus 291 ~aF~~c~~L~~l~l~~n~-i~~I~~~aF 317 (329)
T 3sb4_A 291 GAFMGCDNLRYVLATGDK-ITTLGDELF 317 (329)
T ss_dssp TTTTTCTTEEEEEECSSC-CCEECTTTT
T ss_pred hhhhCCccCCEEEeCCCc-cCccchhhh
Confidence 3 8888888888887766 777766544
No 160
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=98.76 E-value=1.2e-07 Score=103.80 Aligned_cols=195 Identities=15% Similarity=0.182 Sum_probs=115.6
Q ss_pred CceecchhhHHHHHHHHhccCcccCCCeEEEEEEccCCChHHHHHHHHhhhhhhhcccCeEEEEEeCCCCCHHHHHHHHH
Q 002308 150 EEICGRVGERNALLSMLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNHVEVKREFDKTLWVCVSETFDEFRIAKAML 229 (938)
Q Consensus 150 ~~~vGr~~~~~~l~~~l~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 229 (938)
..++|++..++.+...+.... ..+.+.|+|++|+||||+|+.+++.......+.. ..+..-.....+.
T Consensus 16 ~~~vg~~~~~~~L~~~l~~~~-----~~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~-------~~~~~~~~~~~~~ 83 (373)
T 1jr3_A 16 ADVVGQEHVLTALANGLSLGR-----IHHAYLFSGTRGVGKTSIARLLAKGLNCETGITA-------TPCGVCDNCREIE 83 (373)
T ss_dssp TTSCSCHHHHHHHHHHHHHTC-----CCSEEEEESCTTSSHHHHHHHHHHHHSCTTCSCS-------SCCSSSHHHHHHH
T ss_pred hhccCcHHHHHHHHHHHHhCC-----CCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCC-------CCCcccHHHHHHh
Confidence 469999999999999987532 3357899999999999999999874321111100 0000000011111
Q ss_pred HH-------hcCC-CCCCCcHHHHHHHHHHH-hcCceEEEEEecCCCCCccChhHHHHhhhCCCCCcEEEEEcCChh-hh
Q 002308 230 EA-------LTGS-TSNLNALQSLLISIDES-IAGKRFLLVLDDVWDGDYIKWEPFYRCLKKGLHGSKILITTRKES-IV 299 (938)
Q Consensus 230 ~~-------l~~~-~~~~~~~~~~~~~l~~~-l~~~~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtr~~~-v~ 299 (938)
.. +... ........++...+... ..+++.++|+||++..+...++.+...+.....+..+|++|.... +.
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~Ll~~le~~~~~~~~Il~~~~~~~l~ 163 (373)
T 1jr3_A 84 QGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLP 163 (373)
T ss_dssp TSCCSSCEEEETTCSCCSSCHHHHHHHTTSCCSSSSSEEEEEECGGGSCHHHHHHHHHHHHSCCSSEEEEEEESCGGGSC
T ss_pred ccCCCceEEecccccCCHHHHHHHHHHHhhccccCCeEEEEEECcchhcHHHHHHHHHHHhcCCCceEEEEEeCChHhCc
Confidence 00 0000 01112222222221110 135678999999987665566777777766556677777776543 21
Q ss_pred hh-hcCCceEeCCCCChHHHHHHHHHhhcCCCCCchhhHHHHHHHHHHHhcCCChhHHHHHH
Q 002308 300 SM-MRSTDIISIEELAEEECWVLFKRLAFFGRSTEECEKLEQIGQRIARKCKGLPLAAKTMG 360 (938)
Q Consensus 300 ~~-~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~~~ 360 (938)
.. ......+.+.+++.++..+++...+...+.... .+....|++.++|.|..+..+.
T Consensus 164 ~~l~sr~~~i~~~~l~~~~~~~~l~~~~~~~~~~~~----~~a~~~l~~~~~G~~r~~~~~l 221 (373)
T 1jr3_A 164 VTILSRCLQFHLKALDVEQIRHQLEHILNEEHIAHE----PRALQLLARAAEGSLRDALSLT 221 (373)
T ss_dssp HHHHTTSEEEECCCCCHHHHHHHHHHHHHHHTCCBC----HHHHHHHHHHSSSCHHHHHHHH
T ss_pred HHHHhheeEeeCCCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHCCCCHHHHHHHH
Confidence 11 233468999999999999999876532221111 2336788999999998876654
No 161
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.74 E-value=4.2e-07 Score=99.63 Aligned_cols=140 Identities=14% Similarity=0.222 Sum_probs=86.6
Q ss_pred CCCCeEEEeeecCCCCCCCchhccCCCCEEEEecCCCC----CcCCC--CCCCCccceeecccccCceEeCcccccCCCC
Q 002308 757 LNLKELEIHYYGGNTVFPSWMASLTNLKSLDLCFCENC----EQLPP--LGKLPSLEQLFISYMSSVKRVGDEFLGVESD 830 (938)
Q Consensus 757 ~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~----~~l~~--l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~l 830 (938)
.+|+.+.+. +.+...-+..|..+++|+.+++.++... ..++. +.+|++|+.+.|.+ .++.++...+.
T Consensus 248 ~~L~~i~lp-~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~--~i~~I~~~aF~---- 320 (401)
T 4fdw_A 248 SGITTVKLP-NGVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE--SIRILGQGLLG---- 320 (401)
T ss_dssp CCCSEEEEE-TTCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT--TCCEECTTTTT----
T ss_pred CCccEEEeC-CCccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC--ceEEEhhhhhc----
Confidence 456666662 3333323455667888888888877543 12332 88899999999884 37777765442
Q ss_pred CCCCCCCCcccccCCccceeeccccccccccccccccccccccccccccceecccccccccCCC-CCCCCC-CCcCEEEE
Q 002308 831 RHDSSSSSSVIIAFPKLKSLSIFEMEELEEWDYGITRTGNTFINIMPRLSSLTINYCSKLKALP-DHIHQT-TTLKELRI 908 (938)
Q Consensus 831 ~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~lp-~~l~~l-~~L~~L~l 908 (938)
++++|+.+.+.. +++.+.. ..|..+ +|+.|++.+|. +..++ ..+..+ .+++.|.+
T Consensus 321 ------------~c~~L~~l~lp~--~l~~I~~-------~aF~~~-~L~~l~l~~n~-~~~l~~~~F~~~~~~l~~l~v 377 (401)
T 4fdw_A 321 ------------GNRKVTQLTIPA--NVTQINF-------SAFNNT-GIKEVKVEGTT-PPQVFEKVWYGFPDDITVIRV 377 (401)
T ss_dssp ------------TCCSCCEEEECT--TCCEECT-------TSSSSS-CCCEEEECCSS-CCBCCCSSCCCSCTTCCEEEE
T ss_pred ------------CCCCccEEEECc--cccEEcH-------HhCCCC-CCCEEEEcCCC-CcccccccccCCCCCccEEEe
Confidence 567788887743 2443332 234567 99999999864 44454 345556 48899999
Q ss_pred ecCcchHHHhcCCCCCCCCccc
Q 002308 909 GECDLLEERYRKGEGEDWPKTS 930 (938)
Q Consensus 909 ~~c~~l~~~~~~~~~~~~~~i~ 930 (938)
..+. .+.++. ...|...+
T Consensus 378 p~~~--~~~y~~--a~~W~~f~ 395 (401)
T 4fdw_A 378 PAES--VEKYKN--ANGWRDFT 395 (401)
T ss_dssp CGGG--HHHHHH--STTGGGGG
T ss_pred CHHH--HHHhhh--ccchhhhh
Confidence 8765 233332 24576543
No 162
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.73 E-value=6.6e-08 Score=106.65 Aligned_cols=311 Identities=13% Similarity=0.021 Sum_probs=174.3
Q ss_pred cccccccCceeEEeccCCCCCCCCchhhHHHHHhccCCCeeEEecCCCCCCcccCccccccCCCCeeeecCCcccccc-c
Q 002308 531 PISTCRAKRIRSLLIEWPEFGHSSLNGEILEELFRESTSLRALDFPSFYLPLEIPRNIEKLVHLRYLNLSDQKIKKLP-E 609 (938)
Q Consensus 531 ~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~n~~~~~lp~~~~~l~~L~~L~L~~~~i~~lp-~ 609 (938)
..+|..|.+|+++.+..+ + ..+...+|.+|++|+.++|..+- ...-...|.++..|+.+.+..+ +..++ .
T Consensus 64 ~~AF~~c~~L~~i~lp~~-i------~~I~~~aF~~c~~L~~i~lp~~l-~~I~~~aF~~c~~L~~i~~p~~-l~~i~~~ 134 (394)
T 4fs7_A 64 YAAFQGCRKVTEIKIPST-V------REIGEFAFENCSKLEIINIPDSV-KMIGRCTFSGCYALKSILLPLM-LKSIGVE 134 (394)
T ss_dssp TTTTTTCTTEEEEECCTT-C------CEECTTTTTTCTTCCEECCCTTC-CEECTTTTTTCTTCCCCCCCTT-CCEECTT
T ss_pred HHHhhCCCCceEEEeCCC-c------cCcchhHhhCCCCCcEEEeCCCc-eEccchhhcccccchhhcccCc-eeeecce
Confidence 356778888999888643 1 23445568889999999997652 3223445777888888777654 33333 2
Q ss_pred cccCCCCccEEEcCCCCCcccccccccccCccceeecCCCcccccCCccCCCCCCCcccCeeEecCCCCCCCCccccccc
Q 002308 610 TLCELYNLEKLDISGCSDLRELPKGIGKLINMKHLLNSGTRSLRYMPVGIGRLTGLRTLGEFHVSAGGGVDGSKACRLES 689 (938)
Q Consensus 610 ~i~~l~~L~~L~l~~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~ 689 (938)
.|.++..+......... ..-...|..+.+|+.+.+..+ ....-...+..+.+|+.+.+..+ ... + ....+..
T Consensus 135 aF~~~~~~~~~~~~~~~--~i~~~aF~~c~~L~~i~l~~~-~~~I~~~~F~~c~~L~~i~l~~~-~~~-I---~~~~F~~ 206 (394)
T 4fs7_A 135 AFKGCDFKEITIPEGVT--VIGDEAFATCESLEYVSLPDS-METLHNGLFSGCGKLKSIKLPRN-LKI-I---RDYCFAE 206 (394)
T ss_dssp TTTTCCCSEEECCTTCC--EECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCBCCCCTT-CCE-E---CTTTTTT
T ss_pred eeecccccccccCcccc--ccchhhhcccCCCcEEecCCc-cceeccccccCCCCceEEEcCCC-ceE-e---Cchhhcc
Confidence 34555444433333322 112345777788888888654 22223344667778887776432 111 0 0223556
Q ss_pred ccccccCcceeecCcCCCCChhhhhhhhccCCCcCCceEEEEecCCCCCCCCCccchHHHHhhCCCCCCCCeEEEeeecC
Q 002308 690 LKNLEHLQVCCIRRLGDVSDVGEAKLLELDKKKYLSRLRLEFDKKGGGGGRRKNEDDQLLLEALQPPLNLKELEIHYYGG 769 (938)
Q Consensus 690 l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~ 769 (938)
+..|+.+.+..+.... .. ....+.+|+.+.+..+... .-...+..+.+|+.+.+..+..
T Consensus 207 ~~~L~~i~~~~~~~~i--~~-------~~~~~~~l~~i~ip~~~~~------------i~~~~f~~~~~l~~~~~~~~~~ 265 (394)
T 4fs7_A 207 CILLENMEFPNSLYYL--GD-------FALSKTGVKNIIIPDSFTE------------LGKSVFYGCTDLESISIQNNKL 265 (394)
T ss_dssp CTTCCBCCCCTTCCEE--CT-------TTTTTCCCCEEEECTTCCE------------ECSSTTTTCSSCCEEEECCTTC
T ss_pred ccccceeecCCCceEe--eh-------hhcccCCCceEEECCCcee------------cccccccccccceeEEcCCCcc
Confidence 6666666553321110 00 1223456666666422110 0012455667788887765433
Q ss_pred CCCCCCchhccCCCCEEEEecCCCCCcCCCCCCCCccceeecccccCceEeCcccccCCCCCCCCCCCCcccccCCccce
Q 002308 770 NTVFPSWMASLTNLKSLDLCFCENCEQLPPLGKLPSLEQLFISYMSSVKRVGDEFLGVESDRHDSSSSSSVIIAFPKLKS 849 (938)
Q Consensus 770 ~~~~p~~~~~l~~L~~L~L~~~~~~~~l~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~L~~ 849 (938)
.- ....+..+..|+.+.+..+.+.. ..+..+.+|+.+.+..+ ++.++...+. .+.+|+.
T Consensus 266 ~i-~~~~F~~~~~l~~~~~~~~~i~~--~~F~~~~~L~~i~l~~~--i~~I~~~aF~----------------~c~~L~~ 324 (394)
T 4fs7_A 266 RI-GGSLFYNCSGLKKVIYGSVIVPE--KTFYGCSSLTEVKLLDS--VKFIGEEAFE----------------SCTSLVS 324 (394)
T ss_dssp EE-CSCTTTTCTTCCEEEECSSEECT--TTTTTCTTCCEEEECTT--CCEECTTTTT----------------TCTTCCE
T ss_pred ee-eccccccccccceeccCceeecc--ccccccccccccccccc--cceechhhhc----------------CCCCCCE
Confidence 22 34455677778877776543211 12677788888887653 6666654432 4556666
Q ss_pred eeccccccccccccccccccccccccccccceecccccccccCCCC-CCCCCCCcCEEEEecC
Q 002308 850 LSIFEMEELEEWDYGITRTGNTFINIMPRLSSLTINYCSKLKALPD-HIHQTTTLKELRIGEC 911 (938)
Q Consensus 850 L~l~~~~~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~lp~-~l~~l~~L~~L~l~~c 911 (938)
+.+.+ +++.+. ...|..+++|+.+++..+ ++.++. .+.+|++|+.+++..+
T Consensus 325 i~lp~--~v~~I~-------~~aF~~c~~L~~i~lp~~--l~~I~~~aF~~C~~L~~i~lp~~ 376 (394)
T 4fs7_A 325 IDLPY--LVEEIG-------KRSFRGCTSLSNINFPLS--LRKIGANAFQGCINLKKVELPKR 376 (394)
T ss_dssp ECCCT--TCCEEC-------TTTTTTCTTCCEECCCTT--CCEECTTTBTTCTTCCEEEEEGG
T ss_pred EEeCC--cccEEh-------HHhccCCCCCCEEEECcc--ccEehHHHhhCCCCCCEEEECCC
Confidence 66642 233332 223456778888888653 666654 4667888888888643
No 163
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=98.72 E-value=1.1e-07 Score=101.84 Aligned_cols=183 Identities=11% Similarity=0.051 Sum_probs=113.5
Q ss_pred CCceecchhhHHHHHHHHhccCcccCCCeEEEEEEccCCChHHHHHHHHhhhhhhhccc-CeEEEEEeCCCCCHHHHHHH
Q 002308 149 EEEICGRVGERNALLSMLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNHVEVKREF-DKTLWVCVSETFDEFRIAKA 227 (938)
Q Consensus 149 ~~~~vGr~~~~~~l~~~l~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f-~~~~wv~~~~~~~~~~~~~~ 227 (938)
-..++|++..++.+.+++... ....+.++|++|+|||++|+.+++... ...+ ...+.++.+.....
T Consensus 16 ~~~~~g~~~~~~~l~~~l~~~------~~~~~ll~G~~G~GKt~la~~l~~~l~-~~~~~~~~~~~~~~~~~~~------ 82 (319)
T 2chq_A 16 LDEVVGQDEVIQRLKGYVERK------NIPHLLFSGPPGTGKTATAIALARDLF-GENWRDNFIEMNASDERGI------ 82 (319)
T ss_dssp GGGSCSCHHHHHHHHTTTTTT------CCCCEEEESSSSSSHHHHHHHHHHHHH-TTCHHHHCEEEETTSTTCT------
T ss_pred HHHHhCCHHHHHHHHHHHhCC------CCCeEEEECcCCcCHHHHHHHHHHHhc-CCcccCCeEEEeCccccCh------
Confidence 356999999999999888642 222389999999999999999988421 1111 12334444332111
Q ss_pred HHHHhcCCCCCCCcHHHHHHHHHHH--h-cCceEEEEEecCCCCCccChhHHHHhhhCCCCCcEEEEEcCChh-hhhh-h
Q 002308 228 MLEALTGSTSNLNALQSLLISIDES--I-AGKRFLLVLDDVWDGDYIKWEPFYRCLKKGLHGSKILITTRKES-IVSM-M 302 (938)
Q Consensus 228 i~~~l~~~~~~~~~~~~~~~~l~~~--l-~~~~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtr~~~-v~~~-~ 302 (938)
....+........ + .+++-++|+|+++.........+...+.....+.++|+||.... +... .
T Consensus 83 ------------~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~L~~~le~~~~~~~~i~~~~~~~~l~~~l~ 150 (319)
T 2chq_A 83 ------------DVVRHKIKEFARTAPIGGAPFKIIFLDEADALTADAQAALRRTMEMYSKSCRFILSCNYVSRIIEPIQ 150 (319)
T ss_dssp ------------TTSSHHHHHHHHSCCSSSCCCEEEEEETGGGSCHHHHHTTGGGTSSSSSSEEEEEEESCGGGSCHHHH
T ss_pred ------------HHHHHHHHHHHhcCCCCCCCceEEEEeCCCcCCHHHHHHHHHHHHhcCCCCeEEEEeCChhhcchHHH
Confidence 1111111111111 1 25678999999977654445556666655556777888876643 2111 2
Q ss_pred cCCceEeCCCCChHHHHHHHHHhhcCCCCCchhhHHHHHHHHHHHhcCCChhHHHHHH
Q 002308 303 RSTDIISIEELAEEECWVLFKRLAFFGRSTEECEKLEQIGQRIARKCKGLPLAAKTMG 360 (938)
Q Consensus 303 ~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~~~ 360 (938)
.....+.+.+++.++..+++...+...+.... .+..+.+++.++|.+..+....
T Consensus 151 sr~~~i~~~~~~~~~~~~~l~~~~~~~~~~i~----~~~l~~l~~~~~G~~r~~~~~l 204 (319)
T 2chq_A 151 SRCAVFRFKPVPKEAMKKRLLEICEKEGVKIT----EDGLEALIYISGGDFRKAINAL 204 (319)
T ss_dssp TTCEEEECCCCCHHHHHHHHHHHHHTTCCCBC----HHHHHHHHHTTTTCHHHHHHHH
T ss_pred hhCeEEEecCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCCHHHHHHHH
Confidence 33458999999999999999887654332222 2336688889999987654443
No 164
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.62 E-value=5.7e-08 Score=105.25 Aligned_cols=100 Identities=14% Similarity=-0.034 Sum_probs=45.7
Q ss_pred ecCCC-CCCcccCccccccCCCCeeeecC-Ccccccc-ccccCCCCccEEEcCCCCCcccccccccccCccceeecCCCc
Q 002308 574 DFPSF-YLPLEIPRNIEKLVHLRYLNLSD-QKIKKLP-ETLCELYNLEKLDISGCSDLRELPKGIGKLINMKHLLNSGTR 650 (938)
Q Consensus 574 ~L~~n-~~~~~lp~~~~~l~~L~~L~L~~-~~i~~lp-~~i~~l~~L~~L~l~~~~~l~~lp~~i~~l~~L~~L~l~~~~ 650 (938)
+++++ . +..+|. ++.+.+|++|+|++ |.|+.+| ..|.+|++|++|+|++|.+....|..|..|++|++|+|++|.
T Consensus 14 ~~~~~n~-l~~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~ 91 (347)
T 2ifg_A 14 RCTRDGA-LDSLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNA 91 (347)
T ss_dssp ECCSSCC-CTTTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSC
T ss_pred EcCCCCC-CCccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCc
Confidence 44444 3 333454 55555555555553 5555444 235555555555555554333333344555555555555553
Q ss_pred ccccCCccCCCCCCCcccCeeEecCC
Q 002308 651 SLRYMPVGIGRLTGLRTLGEFHVSAG 676 (938)
Q Consensus 651 ~~~~~p~~l~~l~~L~~L~l~~~~~~ 676 (938)
+. .+|..+.....|+.|++.+|.+.
T Consensus 92 l~-~~~~~~~~~~~L~~l~l~~N~~~ 116 (347)
T 2ifg_A 92 LE-SLSWKTVQGLSLQELVLSGNPLH 116 (347)
T ss_dssp CS-CCCSTTTCSCCCCEEECCSSCCC
T ss_pred cc-eeCHHHcccCCceEEEeeCCCcc
Confidence 32 23332222122555555544443
No 165
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.59 E-value=5.8e-09 Score=113.28 Aligned_cols=157 Identities=13% Similarity=0.061 Sum_probs=85.9
Q ss_pred cccceEEEEccCCCcC-----ccccc-ccCceeEEeccCCCCCCCCchhhHHHHHhccCCCeeEEecCCCCCCcccCccc
Q 002308 515 EKVRHLMLIMGKESTF-----PISTC-RAKRIRSLLIEWPEFGHSSLNGEILEELFRESTSLRALDFPSFYLPLEIPRNI 588 (938)
Q Consensus 515 ~~~r~l~l~~~~~~~~-----~~~~~-~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~n~~~~~lp~~~ 588 (938)
..++.++++++.++.. ...+. ..++|+.|++++|.++ ......+...+++|+.|+|++|.+...-...+
T Consensus 72 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~-----~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L 146 (372)
T 3un9_A 72 SSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLD-----PAGLRTLLPVFLRARKLGLQLNSLGPEACKDL 146 (372)
T ss_dssp TTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCC-----HHHHHHTHHHHHTEEEEECCSSCCCHHHHHHH
T ss_pred hhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCC-----HHHHHHHHHHHHhccHhhcCCCCCCHHHHHHH
Confidence 4566777777766531 11111 2257777777776542 22223333445567777777776433222222
Q ss_pred -----cccCCCCeeeecCCcccc-----ccccccCCCCccEEEcCCCCCcc----cccccccccCccceeecCCCccccc
Q 002308 589 -----EKLVHLRYLNLSDQKIKK-----LPETLCELYNLEKLDISGCSDLR----ELPKGIGKLINMKHLLNSGTRSLRY 654 (938)
Q Consensus 589 -----~~l~~L~~L~L~~~~i~~-----lp~~i~~l~~L~~L~l~~~~~l~----~lp~~i~~l~~L~~L~l~~~~~~~~ 654 (938)
...++|++|+|++|.|+. ++..+..+++|++|+|++|.+.. .++..+..+++|++|++++|.+...
T Consensus 147 ~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~ 226 (372)
T 3un9_A 147 RDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDT 226 (372)
T ss_dssp HHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHH
T ss_pred HHHHHhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHH
Confidence 134567777777777652 44555667777777777776322 2344555666777777777744321
Q ss_pred ----CCccCCCCCCCcccCeeEecCC
Q 002308 655 ----MPVGIGRLTGLRTLGEFHVSAG 676 (938)
Q Consensus 655 ----~p~~l~~l~~L~~L~l~~~~~~ 676 (938)
++..+...++|++|++++|.+.
T Consensus 227 g~~~l~~~L~~~~~L~~L~Ls~N~i~ 252 (372)
T 3un9_A 227 AALALARAAREHPSLELLHLYFNELS 252 (372)
T ss_dssp HHHHHHHHHHHCSSCCEEECTTSSCC
T ss_pred HHHHHHHHHHhCCCCCEEeccCCCCC
Confidence 2222334455666665555443
No 166
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.57 E-value=3.1e-09 Score=115.44 Aligned_cols=138 Identities=15% Similarity=0.115 Sum_probs=87.5
Q ss_pred cCceeEEeccCCCCCCCCchhhHHHHHhc-cCCCeeEEecCCCCCCcccC-ccccccCCCCeeeecCCccccc-----cc
Q 002308 537 AKRIRSLLIEWPEFGHSSLNGEILEELFR-ESTSLRALDFPSFYLPLEIP-RNIEKLVHLRYLNLSDQKIKKL-----PE 609 (938)
Q Consensus 537 ~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~-~~~~Lr~L~L~~n~~~~~lp-~~~~~l~~L~~L~L~~~~i~~l-----p~ 609 (938)
+++|+.|.+++|.++... .......+. ..++|+.|+|++|.+...-. .....+.+|++|+|++|.++.. ..
T Consensus 71 ~~~L~~L~Ls~n~l~~~~--~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~ 148 (372)
T 3un9_A 71 LSSLRQLNLAGVRMTPVK--CTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRD 148 (372)
T ss_dssp HTTCCEEECTTSCCCHHH--HHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHH
T ss_pred HhhCCEEEecCCCCCHHH--HHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHH
Confidence 567889999888763211 111222333 33689999999998543322 2233567899999999988632 22
Q ss_pred cc-cCCCCccEEEcCCCCCcc----cccccccccCccceeecCCCccccc----CCccCCCCCCCcccCeeEecCC
Q 002308 610 TL-CELYNLEKLDISGCSDLR----ELPKGIGKLINMKHLLNSGTRSLRY----MPVGIGRLTGLRTLGEFHVSAG 676 (938)
Q Consensus 610 ~i-~~l~~L~~L~l~~~~~l~----~lp~~i~~l~~L~~L~l~~~~~~~~----~p~~l~~l~~L~~L~l~~~~~~ 676 (938)
.+ ...++|++|+|++|.+.. .++..+..+++|++|+|++|.+... ++..+...++|++|++++|.+.
T Consensus 149 ~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~ 224 (372)
T 3un9_A 149 LLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAG 224 (372)
T ss_dssp HHHSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCC
T ss_pred HHHhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCC
Confidence 23 356889999999998422 3555567788899999998854421 2334455556666666555443
No 167
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.57 E-value=1.1e-06 Score=95.45 Aligned_cols=195 Identities=11% Similarity=0.054 Sum_probs=116.3
Q ss_pred CCceecchhhHHHHHHHHhccCcccCCCeEEEEEEccCCChHHHHHHHHhhhhhhhccc-CeEEEEEeCCCCCHHHHHHH
Q 002308 149 EEEICGRVGERNALLSMLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNHVEVKREF-DKTLWVCVSETFDEFRIAKA 227 (938)
Q Consensus 149 ~~~~vGr~~~~~~l~~~l~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f-~~~~wv~~~~~~~~~~~~~~ 227 (938)
-..++|++..++.+..++.... ...+.|+|++|+||||+|+.+++.......+ ..++.++.+.......+ .+
T Consensus 36 ~~~i~g~~~~~~~l~~~l~~~~------~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~ 108 (353)
T 1sxj_D 36 LDEVTAQDHAVTVLKKTLKSAN------LPHMLFYGPPGTGKTSTILALTKELYGPDLMKSRILELNASDERGISIV-RE 108 (353)
T ss_dssp TTTCCSCCTTHHHHHHHTTCTT------CCCEEEECSTTSSHHHHHHHHHHHHHHHHHHTTSEEEECSSSCCCHHHH-TT
T ss_pred HHHhhCCHHHHHHHHHHHhcCC------CCEEEEECCCCCCHHHHHHHHHHHhCCCcccccceEEEccccccchHHH-HH
Confidence 4579999999999999987532 2238999999999999999999853211112 12344444443333322 22
Q ss_pred HHHHhc-CCCCCCCcHHHHHHHHHHHhcCceEEEEEecCCCCCccChhHHHHhhhCCCCCcEEEEEcCChh-hhhh-hcC
Q 002308 228 MLEALT-GSTSNLNALQSLLISIDESIAGKRFLLVLDDVWDGDYIKWEPFYRCLKKGLHGSKILITTRKES-IVSM-MRS 304 (938)
Q Consensus 228 i~~~l~-~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtr~~~-v~~~-~~~ 304 (938)
....+. .......... ....-.+++-+|++|++..........+...+.......++|++|.... +... ...
T Consensus 109 ~~~~~~~~~~~~~~~~~-----~~~~~~~~~~vliiDE~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~~~l~~~l~sR 183 (353)
T 1sxj_D 109 KVKNFARLTVSKPSKHD-----LENYPCPPYKIIILDEADSMTADAQSALRRTMETYSGVTRFCLICNYVTRIIDPLASQ 183 (353)
T ss_dssp HHHHHHHSCCCCCCTTH-----HHHSCCCSCEEEEETTGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHHH
T ss_pred HHHHHhhhcccccchhh-----cccCCCCCceEEEEECCCccCHHHHHHHHHHHHhcCCCceEEEEeCchhhCcchhhcc
Confidence 222211 1110100000 0001123557999999977654455667777766556677777775542 2111 122
Q ss_pred CceEeCCCCChHHHHHHHHHhhcCCCCCchhhHHHHHHHHHHHhcCCChhHHHHH
Q 002308 305 TDIISIEELAEEECWVLFKRLAFFGRSTEECEKLEQIGQRIARKCKGLPLAAKTM 359 (938)
Q Consensus 305 ~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~~ 359 (938)
...+.+.+++.++..+.+...+........ .+..+.|++.++|.|..+..+
T Consensus 184 ~~~i~~~~~~~~~~~~~l~~~~~~~~~~i~----~~~l~~l~~~~~G~~r~~~~~ 234 (353)
T 1sxj_D 184 CSKFRFKALDASNAIDRLRFISEQENVKCD----DGVLERILDISAGDLRRGITL 234 (353)
T ss_dssp SEEEECCCCCHHHHHHHHHHHHHTTTCCCC----HHHHHHHHHHTSSCHHHHHHH
T ss_pred CceEEeCCCCHHHHHHHHHHHHHHhCCCCC----HHHHHHHHHHcCCCHHHHHHH
Confidence 347899999999999999887643322111 234678999999998865443
No 168
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=98.54 E-value=4e-07 Score=89.14 Aligned_cols=152 Identities=13% Similarity=0.141 Sum_probs=83.8
Q ss_pred CCceecchhhHHHHHHHHhccCcccCCCeEEEEEEccCCChHHHHHHHHhhhhhhhc-----ccCeEEEEEeCCCCCHHH
Q 002308 149 EEEICGRVGERNALLSMLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNHVEVKR-----EFDKTLWVCVSETFDEFR 223 (938)
Q Consensus 149 ~~~~vGr~~~~~~l~~~l~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~-----~f~~~~wv~~~~~~~~~~ 223 (938)
...++||+.+++++.+.+... ..+.+.|+|++|+|||++|+.+++...... ....++++.++.
T Consensus 21 ~~~~~g~~~~~~~l~~~l~~~------~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------ 88 (195)
T 1jbk_A 21 LDPVIGRDEEIRRTIQVLQRR------TKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALDMGA------ 88 (195)
T ss_dssp SCCCCSCHHHHHHHHHHHTSS------SSCEEEEECCTTSCHHHHHHHHHHHHHHTCSCGGGTTCEEEEECHHH------
T ss_pred ccccccchHHHHHHHHHHhcC------CCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCcEEEeeHHH------
Confidence 356999999999999998742 345678999999999999999988531110 112334443311
Q ss_pred HHHHHHHHhcCCCCCCCcHHHHHHH-HHHHh-cCceEEEEEecCCCCC--------ccChhHHHHhhhCCCCCcEEEEEc
Q 002308 224 IAKAMLEALTGSTSNLNALQSLLIS-IDESI-AGKRFLLVLDDVWDGD--------YIKWEPFYRCLKKGLHGSKILITT 293 (938)
Q Consensus 224 ~~~~i~~~l~~~~~~~~~~~~~~~~-l~~~l-~~~~~LlVlDdv~~~~--------~~~~~~l~~~l~~~~~gs~ilvTt 293 (938)
+ ... ............. +.... .+++.+|||||++... ......+...+.. .+..+|+||
T Consensus 89 ~-------~~~-~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDe~~~l~~~~~~~~~~~~~~~l~~~~~~--~~~~~i~~~ 158 (195)
T 1jbk_A 89 L-------VAG-AKYRGEFEERLKGVLNDLAKQEGNVILFIDELHTMVGAGKADGAMDAGNMLKPALAR--GELHCVGAT 158 (195)
T ss_dssp H-------HTT-TCSHHHHHHHHHHHHHHHHHSTTTEEEEEETGGGGTT------CCCCHHHHHHHHHT--TSCCEEEEE
T ss_pred H-------hcc-CCccccHHHHHHHHHHHHhhcCCCeEEEEeCHHHHhccCcccchHHHHHHHHHhhcc--CCeEEEEeC
Confidence 1 000 0000011111111 11111 3568899999997642 1112333333332 234566666
Q ss_pred CChhhhh------h-hcCCceEeCCCCChHHHHHHH
Q 002308 294 RKESIVS------M-MRSTDIISIEELAEEECWVLF 322 (938)
Q Consensus 294 r~~~v~~------~-~~~~~~~~l~~L~~~~~~~lf 322 (938)
....... . ......+.+.+++.++..+++
T Consensus 159 ~~~~~~~~~~~~~~l~~r~~~i~~~~p~~~~~~~il 194 (195)
T 1jbk_A 159 TLDEYRQYIEKDAALERRFQKVFVAEPSVEDTIAIL 194 (195)
T ss_dssp CHHHHHHHTTTCHHHHTTEEEEECCCCCHHHHHTTC
T ss_pred CHHHHHHHHhcCHHHHHHhceeecCCCCHHHHHHHh
Confidence 6544221 1 122236888999888876653
No 169
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=98.54 E-value=2.3e-07 Score=94.65 Aligned_cols=175 Identities=15% Similarity=0.126 Sum_probs=101.1
Q ss_pred Cceecch---hhHHHHHHHHhccCcccCCCeEEEEEEccCCChHHHHHHHHhhhhhhhcccCeEEEEEeCCCCCHHHHHH
Q 002308 150 EEICGRV---GERNALLSMLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNHVEVKREFDKTLWVCVSETFDEFRIAK 226 (938)
Q Consensus 150 ~~~vGr~---~~~~~l~~~l~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~ 226 (938)
+.|+|+. ..++.+..+... ...+.+.|+|++|+||||+|+.+++. .......+.|+.++...+.
T Consensus 28 ~~~~~~~~~~~~~~~l~~~~~~------~~~~~~ll~G~~G~GKT~la~~l~~~--~~~~~~~~~~~~~~~~~~~----- 94 (242)
T 3bos_A 28 TSYYPAAGNDELIGALKSAASG------DGVQAIYLWGPVKSGRTHLIHAACAR--ANELERRSFYIPLGIHASI----- 94 (242)
T ss_dssp TTSCC--CCHHHHHHHHHHHHT------CSCSEEEEECSTTSSHHHHHHHHHHH--HHHTTCCEEEEEGGGGGGS-----
T ss_pred hhccCCCCCHHHHHHHHHHHhC------CCCCeEEEECCCCCCHHHHHHHHHHH--HHHcCCeEEEEEHHHHHHH-----
Confidence 4577633 455556655542 13467899999999999999999984 3333345667766431110
Q ss_pred HHHHHhcCCCCCCCcHHHHHHHHHHHhcCceEEEEEecCCCCCccC--hhHHHHhhhCC-CCC-cEEEEEcCChh-----
Q 002308 227 AMLEALTGSTSNLNALQSLLISIDESIAGKRFLLVLDDVWDGDYIK--WEPFYRCLKKG-LHG-SKILITTRKES----- 297 (938)
Q Consensus 227 ~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~~~~--~~~l~~~l~~~-~~g-s~ilvTtr~~~----- 297 (938)
+. +. + +.+ .++.+||+||++...... ...+...+... ..+ .++|+||+...
T Consensus 95 -~~--------------~~---~-~~~-~~~~vliiDe~~~~~~~~~~~~~l~~~l~~~~~~~~~~ii~~~~~~~~~~~~ 154 (242)
T 3bos_A 95 -ST--------------AL---L-EGL-EQFDLICIDDVDAVAGHPLWEEAIFDLYNRVAEQKRGSLIVSASASPMEAGF 154 (242)
T ss_dssp -CG--------------GG---G-TTG-GGSSEEEEETGGGGTTCHHHHHHHHHHHHHHHHHCSCEEEEEESSCTTTTTC
T ss_pred -HH--------------HH---H-Hhc-cCCCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCCeEEEEcCCCHHHHHH
Confidence 00 00 0 001 345689999997653322 23344443221 122 24777776432
Q ss_pred ----hhhhhcCCceEeCCCCChHHHHHHHHHhhcCCCCCchhhHHHHHHHHHHHhcCCChhHHHHHHh
Q 002308 298 ----IVSMMRSTDIISIEELAEEECWVLFKRLAFFGRSTEECEKLEQIGQRIARKCKGLPLAAKTMGS 361 (938)
Q Consensus 298 ----v~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~~~~ 361 (938)
+...+.....+.+.+++.++..+++...+....... ..+..+.+++.++|.+..+..+..
T Consensus 155 ~~~~l~~r~~~~~~i~l~~~~~~~~~~~l~~~~~~~~~~~----~~~~~~~l~~~~~g~~r~l~~~l~ 218 (242)
T 3bos_A 155 VLPDLVSRMHWGLTYQLQPMMDDEKLAALQRRAAMRGLQL----PEDVGRFLLNRMARDLRTLFDVLD 218 (242)
T ss_dssp CCHHHHHHHHHSEEEECCCCCGGGHHHHHHHHHHHTTCCC----CHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred hhhhhhhHhhcCceEEeCCCCHHHHHHHHHHHHHHcCCCC----CHHHHHHHHHHccCCHHHHHHHHH
Confidence 111112236899999999999999998764222211 123466888889998876655443
No 170
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.52 E-value=9.4e-08 Score=103.56 Aligned_cols=85 Identities=19% Similarity=0.192 Sum_probs=40.9
Q ss_pred hccCCCeeEEecCC-CCCCcccCccccccCCCCeeeecCCccccccc-cccCCCCccEEEcCCCCCcccccccccccCcc
Q 002308 564 FRESTSLRALDFPS-FYLPLEIPRNIEKLVHLRYLNLSDQKIKKLPE-TLCELYNLEKLDISGCSDLRELPKGIGKLINM 641 (938)
Q Consensus 564 ~~~~~~Lr~L~L~~-n~~~~~lp~~~~~l~~L~~L~L~~~~i~~lp~-~i~~l~~L~~L~l~~~~~l~~lp~~i~~l~~L 641 (938)
+..+++|+.|+|++ |.+....+..|++|.+|++|+|++|.|+.+|. .|.+|++|+.|+|++|. +..+|..+....+|
T Consensus 27 l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~-l~~~~~~~~~~~~L 105 (347)
T 2ifg_A 27 LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNA-LESLSWKTVQGLSL 105 (347)
T ss_dssp SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSC-CSCCCSTTTCSCCC
T ss_pred CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCc-cceeCHHHcccCCc
Confidence 44445555555553 44332233445555555555555555554433 34555555555555555 33444333222235
Q ss_pred ceeecCCC
Q 002308 642 KHLLNSGT 649 (938)
Q Consensus 642 ~~L~l~~~ 649 (938)
++|++.+|
T Consensus 106 ~~l~l~~N 113 (347)
T 2ifg_A 106 QELVLSGN 113 (347)
T ss_dssp CEEECCSS
T ss_pred eEEEeeCC
Confidence 55555554
No 171
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.47 E-value=2.3e-06 Score=94.24 Aligned_cols=288 Identities=11% Similarity=0.051 Sum_probs=175.8
Q ss_pred HHHHhccCCCeeEEecCCCCCCccc-CccccccCCCCeeeecCCccccccc-cccCCCCccEEEcCCCCCcccccccccc
Q 002308 560 LEELFRESTSLRALDFPSFYLPLEI-PRNIEKLVHLRYLNLSDQKIKKLPE-TLCELYNLEKLDISGCSDLRELPKGIGK 637 (938)
Q Consensus 560 ~~~~~~~~~~Lr~L~L~~n~~~~~l-p~~~~~l~~L~~L~L~~~~i~~lp~-~i~~l~~L~~L~l~~~~~l~~lp~~i~~ 637 (938)
...+|.+|++|+.+.|..+ ...+ ...|.++.+|+.++|.++ ++.++. .+.++.+|+.+.+..+- ...-...|..
T Consensus 63 g~~AF~~c~~L~~i~lp~~--i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~l-~~i~~~aF~~ 138 (394)
T 4fs7_A 63 GYAAFQGCRKVTEIKIPST--VREIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLML-KSIGVEAFKG 138 (394)
T ss_dssp CTTTTTTCTTEEEEECCTT--CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTTC-CEECTTTTTT
T ss_pred HHHHhhCCCCceEEEeCCC--ccCcchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccCce-eeecceeeec
Confidence 3445899999999999865 3344 456889999999999765 666654 57888999988877642 2222334555
Q ss_pred cCccceeecCCCcccccCCccCCCCCCCcccCeeEecCCCCCCCCcccccccccccccCcceeecCcCCCCChhhhhhhh
Q 002308 638 LINMKHLLNSGTRSLRYMPVGIGRLTGLRTLGEFHVSAGGGVDGSKACRLESLKNLEHLQVCCIRRLGDVSDVGEAKLLE 717 (938)
Q Consensus 638 l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~ 717 (938)
+..+........ ...-...|.++++|+.+.+..+- .. + ....+..+.+|+.+.+..+- ..+. ...
T Consensus 139 ~~~~~~~~~~~~--~~i~~~aF~~c~~L~~i~l~~~~-~~-I---~~~~F~~c~~L~~i~l~~~~--~~I~------~~~ 203 (394)
T 4fs7_A 139 CDFKEITIPEGV--TVIGDEAFATCESLEYVSLPDSM-ET-L---HNGLFSGCGKLKSIKLPRNL--KIIR------DYC 203 (394)
T ss_dssp CCCSEEECCTTC--CEECTTTTTTCTTCCEEECCTTC-CE-E---CTTTTTTCTTCCBCCCCTTC--CEEC------TTT
T ss_pred ccccccccCccc--cccchhhhcccCCCcEEecCCcc-ce-e---ccccccCCCCceEEEcCCCc--eEeC------chh
Confidence 443333332222 12223457888999988764321 11 1 12247778888888774331 1111 114
Q ss_pred ccCCCcCCceEEEEecCCCCCCCCCccchHHHHhhCCCCCCCCeEEEeeecCCCCCCCchhccCCCCEEEEecCCCCCcC
Q 002308 718 LDKKKYLSRLRLEFDKKGGGGGRRKNEDDQLLLEALQPPLNLKELEIHYYGGNTVFPSWMASLTNLKSLDLCFCENCEQL 797 (938)
Q Consensus 718 l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~l 797 (938)
+..+..|+.+.+..+... +........+|+.+.+.... ...-...+..+.+|+.+.+..+...-..
T Consensus 204 F~~~~~L~~i~~~~~~~~-------------i~~~~~~~~~l~~i~ip~~~-~~i~~~~f~~~~~l~~~~~~~~~~~i~~ 269 (394)
T 4fs7_A 204 FAECILLENMEFPNSLYY-------------LGDFALSKTGVKNIIIPDSF-TELGKSVFYGCTDLESISIQNNKLRIGG 269 (394)
T ss_dssp TTTCTTCCBCCCCTTCCE-------------ECTTTTTTCCCCEEEECTTC-CEECSSTTTTCSSCCEEEECCTTCEECS
T ss_pred hccccccceeecCCCceE-------------eehhhcccCCCceEEECCCc-eecccccccccccceeEEcCCCcceeec
Confidence 667777777765433211 11223345688888885432 2212345668899999999876322122
Q ss_pred CCCCCCCccceeecccccCceEeCcccccCCCCCCCCCCCCcccccCCccceeecccccccccccccccccccccccccc
Q 002308 798 PPLGKLPSLEQLFISYMSSVKRVGDEFLGVESDRHDSSSSSSVIIAFPKLKSLSIFEMEELEEWDYGITRTGNTFINIMP 877 (938)
Q Consensus 798 ~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~~~~~~~~~~~~~~~~l~ 877 (938)
..+..++.|+.+....+ .++...+ ..+.+|+.+.+.+ +++.+. ...+..++
T Consensus 270 ~~F~~~~~l~~~~~~~~----~i~~~~F----------------~~~~~L~~i~l~~--~i~~I~-------~~aF~~c~ 320 (394)
T 4fs7_A 270 SLFYNCSGLKKVIYGSV----IVPEKTF----------------YGCSSLTEVKLLD--SVKFIG-------EEAFESCT 320 (394)
T ss_dssp CTTTTCTTCCEEEECSS----EECTTTT----------------TTCTTCCEEEECT--TCCEEC-------TTTTTTCT
T ss_pred cccccccccceeccCce----eeccccc----------------ccccccccccccc--ccceec-------hhhhcCCC
Confidence 23888889988877643 2443322 2466777777653 233332 23355789
Q ss_pred ccceecccccccccCCCC-CCCCCCCcCEEEEecC
Q 002308 878 RLSSLTINYCSKLKALPD-HIHQTTTLKELRIGEC 911 (938)
Q Consensus 878 ~L~~L~l~~c~~l~~lp~-~l~~l~~L~~L~l~~c 911 (938)
+|+.++|.+ .++.++. .+.+|++|+.+.+..+
T Consensus 321 ~L~~i~lp~--~v~~I~~~aF~~c~~L~~i~lp~~ 353 (394)
T 4fs7_A 321 SLVSIDLPY--LVEEIGKRSFRGCTSLSNINFPLS 353 (394)
T ss_dssp TCCEECCCT--TCCEECTTTTTTCTTCCEECCCTT
T ss_pred CCCEEEeCC--cccEEhHHhccCCCCCCEEEECcc
Confidence 999999975 4777754 5678999999988654
No 172
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=98.38 E-value=4.8e-06 Score=92.31 Aligned_cols=162 Identities=17% Similarity=0.159 Sum_probs=97.9
Q ss_pred eEEEEEEccCCChHHHHHHHHhhhhhhhccc--CeEEEEEeCCCCCHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHhc
Q 002308 177 LHIISIVGMGGIGKTTLAQLACNHVEVKREF--DKTLWVCVSETFDEFRIAKAMLEALTGSTSNLNALQSLLISIDESIA 254 (938)
Q Consensus 177 ~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f--~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~ 254 (938)
...+.|+|++|+||||||+.+++. ....+ ..++++++. .+..++...+... .. ..+...+.
T Consensus 130 ~~~lll~Gp~G~GKTtLa~aia~~--l~~~~~~~~v~~v~~~------~~~~~~~~~~~~~-----~~----~~~~~~~~ 192 (440)
T 2z4s_A 130 YNPLFIYGGVGLGKTHLLQSIGNY--VVQNEPDLRVMYITSE------KFLNDLVDSMKEG-----KL----NEFREKYR 192 (440)
T ss_dssp SCCEEEECSSSSSHHHHHHHHHHH--HHHHCCSSCEEEEEHH------HHHHHHHHHHHTT-----CH----HHHHHHHT
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH--HHHhCCCCeEEEeeHH------HHHHHHHHHHHcc-----cH----HHHHHHhc
Confidence 567999999999999999999984 33333 234555433 3344455444321 11 12333344
Q ss_pred CceEEEEEecCCCCCc--cChhHHHHhhhC-CCCCcEEEEEcCCh---------hhhhhhcCCceEeCCCCChHHHHHHH
Q 002308 255 GKRFLLVLDDVWDGDY--IKWEPFYRCLKK-GLHGSKILITTRKE---------SIVSMMRSTDIISIEELAEEECWVLF 322 (938)
Q Consensus 255 ~~~~LlVlDdv~~~~~--~~~~~l~~~l~~-~~~gs~ilvTtr~~---------~v~~~~~~~~~~~l~~L~~~~~~~lf 322 (938)
.+.-+|++||++.... ...+.+...+.. ...|..||+||.+. .+...+.....+.+.+++.++..+++
T Consensus 193 ~~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~~~~~~iIitt~~~~~~l~~l~~~L~sR~~~g~~i~l~~p~~e~r~~iL 272 (440)
T 2z4s_A 193 KKVDILLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDRLVSRFQMGLVAKLEPPDEETRKSIA 272 (440)
T ss_dssp TTCSEEEEECGGGGSSCHHHHHHHHHHHHHHHTTTCEEEEEESSCGGGCSSCCHHHHHHHHSSBCCBCCCCCHHHHHHHH
T ss_pred CCCCEEEEeCcccccCChHHHHHHHHHHHHHHHCCCeEEEEECCCHHHHHHHHHHHHhhccCCeEEEeCCCCHHHHHHHH
Confidence 3567999999975432 122334444432 23567788888763 12222333457899999999999999
Q ss_pred HHhhcCCCCCchhhHHHHHHHHHHHhcCCChhHHHHH
Q 002308 323 KRLAFFGRSTEECEKLEQIGQRIARKCKGLPLAAKTM 359 (938)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~~ 359 (938)
...+......... +....|++.+.|.+-.+.-+
T Consensus 273 ~~~~~~~~~~i~~----e~l~~la~~~~gn~R~l~~~ 305 (440)
T 2z4s_A 273 RKMLEIEHGELPE----EVLNFVAENVDDNLRRLRGA 305 (440)
T ss_dssp HHHHHHHTCCCCT----THHHHHHHHCCSCHHHHHHH
T ss_pred HHHHHHcCCCCCH----HHHHHHHHhcCCCHHHHHHH
Confidence 8876422211111 23567888888888655433
No 173
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=98.37 E-value=9.7e-06 Score=83.57 Aligned_cols=189 Identities=14% Similarity=0.076 Sum_probs=100.0
Q ss_pred CCceecchhhHHHHHHHHhccCcc------cCCCeEEEEEEccCCChHHHHHHHHhhhhhhhcccCeEEEEEeCCCCCHH
Q 002308 149 EEEICGRVGERNALLSMLLCESSE------QQKGLHIISIVGMGGIGKTTLAQLACNHVEVKREFDKTLWVCVSETFDEF 222 (938)
Q Consensus 149 ~~~~vGr~~~~~~l~~~l~~~~~~------~~~~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~ 222 (938)
-..++|.+...+.+.+.+...... +....+.+.|+|++|+|||++|+.+++. .... .+.+.++.-.+.
T Consensus 5 ~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~vll~G~~GtGKT~la~~la~~--~~~~---~~~~~~~~~~~~- 78 (262)
T 2qz4_A 5 FKDVAGMHEAKLEVREFVDYLKSPERFLQLGAKVPKGALLLGPPGCGKTLLAKAVATE--AQVP---FLAMAGAEFVEV- 78 (262)
T ss_dssp TTSSCSCHHHHHHHHHHHHHHHCCC------CCCCCEEEEESCTTSSHHHHHHHHHHH--HTCC---EEEEETTTTSSS-
T ss_pred HHHhCCHHHHHHHHHHHHHHHHCHHHHHHcCCCCCceEEEECCCCCCHHHHHHHHHHH--hCCC---EEEechHHHHhh-
Confidence 356899988877776654321100 0123456889999999999999999883 3222 334444331110
Q ss_pred HHHHHHHHHhcCCCCCCCcHHHHHHHHHHHhcCceEEEEEecCCCC------------CccCh---hHHHHhhhCC--CC
Q 002308 223 RIAKAMLEALTGSTSNLNALQSLLISIDESIAGKRFLLVLDDVWDG------------DYIKW---EPFYRCLKKG--LH 285 (938)
Q Consensus 223 ~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~------------~~~~~---~~l~~~l~~~--~~ 285 (938)
. ...........+.......+.+|++|+++.. ..... ..+...+... ..
T Consensus 79 -------------~-~~~~~~~~~~~~~~a~~~~~~vl~iDeid~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~ 144 (262)
T 2qz4_A 79 -------------I-GGLGAARVRSLFKEARARAPCIVYIDEIDAVGKKRSTTMSGFSNTEEEQTLNQLLVEMDGMGTTD 144 (262)
T ss_dssp -------------S-TTHHHHHHHHHHHHHHHTCSEEEEEECC-------------------CHHHHHHHHHHHTCCTTC
T ss_pred -------------c-cChhHHHHHHHHHHHHhcCCeEEEEeCcchhhccccccccCccchhHHHHHHHHHHHhhCcCCCC
Confidence 0 0001111222233333456789999999753 11111 2233333321 23
Q ss_pred CcEEEEEcCChhhhh-hh-c---CCceEeCCCCChHHHHHHHHHhhcCCCCCchhhHHHHHHHHHHHhcCCChh-HHHHH
Q 002308 286 GSKILITTRKESIVS-MM-R---STDIISIEELAEEECWVLFKRLAFFGRSTEECEKLEQIGQRIARKCKGLPL-AAKTM 359 (938)
Q Consensus 286 gs~ilvTtr~~~v~~-~~-~---~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl-ai~~~ 359 (938)
+..||.||....... .. . -...+.+...+.++..+++..++........ .......+++.+.|.+- .+..+
T Consensus 145 ~~~vi~~tn~~~~ld~~l~~~~R~~~~i~i~~p~~~~r~~il~~~~~~~~~~~~---~~~~~~~l~~~~~g~~~~~l~~l 221 (262)
T 2qz4_A 145 HVIVLASTNRADILDGALMRPGRLDRHVFIDLPTLQERREIFEQHLKSLKLTQS---STFYSQRLAELTPGFSGADIANI 221 (262)
T ss_dssp CEEEEEEESCGGGGGSGGGSTTSCCEEEECCSCCHHHHHHHHHHHHHHTTCCBT---HHHHHHHHHHTCTTCCHHHHHHH
T ss_pred CEEEEecCCChhhcCHHHhcCCcCCeEEEeCCcCHHHHHHHHHHHHHhCCCCcc---hhhHHHHHHHHCCCCCHHHHHHH
Confidence 456666666543211 11 1 1357789999999999999887643222111 11224678888877643 45444
Q ss_pred H
Q 002308 360 G 360 (938)
Q Consensus 360 ~ 360 (938)
.
T Consensus 222 ~ 222 (262)
T 2qz4_A 222 C 222 (262)
T ss_dssp H
T ss_pred H
Confidence 3
No 174
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=98.37 E-value=2.7e-06 Score=88.99 Aligned_cols=187 Identities=17% Similarity=0.103 Sum_probs=103.7
Q ss_pred CCCceecchhhHHHHHHHHhccCcc-------cCCCeEEEEEEccCCChHHHHHHHHhhhhhhhcccCeEEEEEeCCCCC
Q 002308 148 DEEEICGRVGERNALLSMLLCESSE-------QQKGLHIISIVGMGGIGKTTLAQLACNHVEVKREFDKTLWVCVSETFD 220 (938)
Q Consensus 148 ~~~~~vGr~~~~~~l~~~l~~~~~~-------~~~~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~ 220 (938)
.-..++|.+..++++.+.+...... +....+.+.|+|++|+|||++|+.+++. .... .+.+..+.-
T Consensus 15 ~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la~~la~~--~~~~---~~~v~~~~~-- 87 (285)
T 3h4m_A 15 RYEDIGGLEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLAKAVATE--TNAT---FIRVVGSEL-- 87 (285)
T ss_dssp CGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHCCCCCSEEEEESSSSSSHHHHHHHHHHH--TTCE---EEEEEGGGG--
T ss_pred CHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHH--hCCC---EEEEehHHH--
Confidence 3467999999999998877532000 0123456899999999999999999884 3222 223332221
Q ss_pred HHHHHHHHHHHhcCCCCCCCcHHH-HHHHHHHHhcCceEEEEEecCCCC-----------CccChhHHHHhh---h--CC
Q 002308 221 EFRIAKAMLEALTGSTSNLNALQS-LLISIDESIAGKRFLLVLDDVWDG-----------DYIKWEPFYRCL---K--KG 283 (938)
Q Consensus 221 ~~~~~~~i~~~l~~~~~~~~~~~~-~~~~l~~~l~~~~~LlVlDdv~~~-----------~~~~~~~l~~~l---~--~~ 283 (938)
... ....... ....+......++.+|+||+++.. +......+...+ . ..
T Consensus 88 ------------~~~--~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~ 153 (285)
T 3h4m_A 88 ------------VKK--FIGEGASLVKDIFKLAKEKAPSIIFIDEIDAIAAKRTDALTGGDREVQRTLMQLLAEMDGFDA 153 (285)
T ss_dssp ------------CCC--STTHHHHHHHHHHHHHHHTCSEEEEEETTHHHHBCCSSSCCGGGGHHHHHHHHHHHHHHTTCS
T ss_pred ------------HHh--ccchHHHHHHHHHHHHHHcCCeEEEEECHHHhcccCccccCCccHHHHHHHHHHHHHhhCCCC
Confidence 000 0111111 222223333456789999999542 111112233222 2 12
Q ss_pred CCCcEEEEEcCChhhhhh-h----cCCceEeCCCCChHHHHHHHHHhhcCCCCCchhhHHHHHHHHHHHhcCC-ChhHHH
Q 002308 284 LHGSKILITTRKESIVSM-M----RSTDIISIEELAEEECWVLFKRLAFFGRSTEECEKLEQIGQRIARKCKG-LPLAAK 357 (938)
Q Consensus 284 ~~gs~ilvTtr~~~v~~~-~----~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g-~Plai~ 357 (938)
..+..||.||........ . .-...+.+...+.++..+++...+...... .... ...+++.+.| .|-.+.
T Consensus 154 ~~~~~vI~ttn~~~~l~~~l~~~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~-~~~~----~~~l~~~~~g~~~~~i~ 228 (285)
T 3h4m_A 154 RGDVKIIGATNRPDILDPAILRPGRFDRIIEVPAPDEKGRLEILKIHTRKMNLA-EDVN----LEEIAKMTEGCVGAELK 228 (285)
T ss_dssp SSSEEEEEECSCGGGBCHHHHSTTSEEEEEECCCCCHHHHHHHHHHHHTTSCBC-TTCC----HHHHHHHCTTCCHHHHH
T ss_pred CCCEEEEEeCCCchhcCHHHcCCCcCCeEEEECCCCHHHHHHHHHHHHhcCCCC-CcCC----HHHHHHHcCCCCHHHHH
Confidence 345677778876533221 1 112478999999999999999886433211 1112 3566777766 454554
Q ss_pred HHH
Q 002308 358 TMG 360 (938)
Q Consensus 358 ~~~ 360 (938)
.+.
T Consensus 229 ~l~ 231 (285)
T 3h4m_A 229 AIC 231 (285)
T ss_dssp HHH
T ss_pred HHH
Confidence 443
No 175
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.36 E-value=1.9e-06 Score=93.47 Aligned_cols=196 Identities=15% Similarity=0.103 Sum_probs=109.2
Q ss_pred CceecchhhHHHHHHHH-hccCcccCCCeEEEEEEccCCChHHHHHHHHhhhhhh-h-cc--cC----------------
Q 002308 150 EEICGRVGERNALLSML-LCESSEQQKGLHIISIVGMGGIGKTTLAQLACNHVEV-K-RE--FD---------------- 208 (938)
Q Consensus 150 ~~~vGr~~~~~~l~~~l-~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~v~~~~~~-~-~~--f~---------------- 208 (938)
..++|++...+.+..++ .... ... +.|+|+.|+||||+|+.++....- . +. ++
T Consensus 14 ~~~vg~~~~~~~l~~~~~~~~~-----~~~-~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i~~~~~~~~~~~~~~~~~~~ 87 (354)
T 1sxj_E 14 NALSHNEELTNFLKSLSDQPRD-----LPH-LLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQFVTASNRKLELNV 87 (354)
T ss_dssp GGCCSCHHHHHHHHTTTTCTTC-----CCC-EEEECSTTSSHHHHHHTHHHHHSCTTCCC------------------CC
T ss_pred HHhcCCHHHHHHHHHHHhhCCC-----CCe-EEEECCCCCCHHHHHHHHHHHHcCCCCCeEEecceeecccccccceeee
Confidence 56899999888888877 4321 233 899999999999999998873100 0 00 00
Q ss_pred ----eEEEEEeCCCC-CHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHhcCceEEEEEecCCCCCccChhHHHHhhhCC
Q 002308 209 ----KTLWVCVSETF-DEFRIAKAMLEALTGSTSNLNALQSLLISIDESIAGKRFLLVLDDVWDGDYIKWEPFYRCLKKG 283 (938)
Q Consensus 209 ----~~~wv~~~~~~-~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~~~~~~~l~~~l~~~ 283 (938)
..+.+..+... ......++++..+..... . .... .+. .+.+++-++|+|++...+......+...+...
T Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~---~~~~-~ls-~l~~~~~vlilDE~~~L~~~~~~~L~~~le~~ 161 (354)
T 1sxj_E 88 VSSPYHLEITPSDMGNNDRIVIQELLKEVAQMEQ-V---DFQD-SKD-GLAHRYKCVIINEANSLTKDAQAALRRTMEKY 161 (354)
T ss_dssp EECSSEEEECCC----CCHHHHHHHHHHHTTTTC------------------CCEEEEEECTTSSCHHHHHHHHHHHHHS
T ss_pred ecccceEEecHhhcCCcchHHHHHHHHHHHHhcc-c---cccc-ccc-ccCCCCeEEEEeCccccCHHHHHHHHHHHHhh
Confidence 01111111100 000012222222211100 0 0000 000 02346679999999876655566677777655
Q ss_pred CCCcEEEEEcCChh-hhhh-hcCCceEeCCCCChHHHHHHHHHhhcCCCCCchhhHHHHHHHHHHHhcCCChhHHHHHH
Q 002308 284 LHGSKILITTRKES-IVSM-MRSTDIISIEELAEEECWVLFKRLAFFGRSTEECEKLEQIGQRIARKCKGLPLAAKTMG 360 (938)
Q Consensus 284 ~~gs~ilvTtr~~~-v~~~-~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~~~ 360 (938)
..+..+|++|.... +... ......+++.+++.++..+.+...+...+..... .+....|++.++|.+..+..+.
T Consensus 162 ~~~~~~Il~t~~~~~l~~~l~sR~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~---~~~l~~i~~~~~G~~r~a~~~l 237 (354)
T 1sxj_E 162 SKNIRLIMVCDSMSPIIAPIKSQCLLIRCPAPSDSEISTILSDVVTNERIQLET---KDILKRIAQASNGNLRVSLLML 237 (354)
T ss_dssp TTTEEEEEEESCSCSSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHHTCEECC---SHHHHHHHHHHTTCHHHHHHHH
T ss_pred cCCCEEEEEeCCHHHHHHHHHhhceEEecCCcCHHHHHHHHHHHHHHcCCCCCc---HHHHHHHHHHcCCCHHHHHHHH
Confidence 55677887776542 2222 2334689999999999999998876432221110 1336788899999887665544
No 176
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=98.36 E-value=4.2e-06 Score=90.00 Aligned_cols=179 Identities=16% Similarity=0.161 Sum_probs=108.2
Q ss_pred CCceecchhhHHHHHHHHhccCcccCCCeEEEEEEccCCChHHHHHHHHhhhhhhhcccCeEEEEEeCCCCCHHHHHHHH
Q 002308 149 EEEICGRVGERNALLSMLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNHVEVKREFDKTLWVCVSETFDEFRIAKAM 228 (938)
Q Consensus 149 ~~~~vGr~~~~~~l~~~l~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i 228 (938)
-..++|++..++.+..++...... ......|.|+|++|+|||++|+.+++. .... .+.+++......
T Consensus 28 ~~~iiG~~~~~~~l~~~l~~~~~~-~~~~~~vll~G~~GtGKT~la~~ia~~--~~~~---~~~~~~~~~~~~------- 94 (338)
T 3pfi_A 28 FDGYIGQESIKKNLNVFIAAAKKR-NECLDHILFSGPAGLGKTTLANIISYE--MSAN---IKTTAAPMIEKS------- 94 (338)
T ss_dssp GGGCCSCHHHHHHHHHHHHHHHHT-TSCCCCEEEECSTTSSHHHHHHHHHHH--TTCC---EEEEEGGGCCSH-------
T ss_pred HHHhCChHHHHHHHHHHHHHHHhc-CCCCCeEEEECcCCCCHHHHHHHHHHH--hCCC---eEEecchhccch-------
Confidence 457999999999999988753210 123456899999999999999999873 3322 233333221111
Q ss_pred HHHhcCCCCCCCcHHHHHHHHHHHhcCceEEEEEecCCCCCccChhHHHHhhhCCC------------------CCcEEE
Q 002308 229 LEALTGSTSNLNALQSLLISIDESIAGKRFLLVLDDVWDGDYIKWEPFYRCLKKGL------------------HGSKIL 290 (938)
Q Consensus 229 ~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~~~~~~~l~~~l~~~~------------------~gs~il 290 (938)
......+.. ..+..+|+||++..........+...+.... ++..+|
T Consensus 95 --------------~~~~~~~~~--~~~~~vl~lDEi~~l~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i 158 (338)
T 3pfi_A 95 --------------GDLAAILTN--LSEGDILFIDEIHRLSPAIEEVLYPAMEDYRLDIIIGSGPAAQTIKIDLPKFTLI 158 (338)
T ss_dssp --------------HHHHHHHHT--CCTTCEEEEETGGGCCHHHHHHHHHHHHTSCC---------CCCCCCCCCCCEEE
T ss_pred --------------hHHHHHHHh--ccCCCEEEEechhhcCHHHHHHHHHHHHhccchhhcccCccccceecCCCCeEEE
Confidence 111111111 2356789999998765444455655554432 124566
Q ss_pred EEcCChhh-hhhh-cC-CceEeCCCCChHHHHHHHHHhhcCCCCCchhhHHHHHHHHHHHhcCCChhHHHHHH
Q 002308 291 ITTRKESI-VSMM-RS-TDIISIEELAEEECWVLFKRLAFFGRSTEECEKLEQIGQRIARKCKGLPLAAKTMG 360 (938)
Q Consensus 291 vTtr~~~v-~~~~-~~-~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~~~ 360 (938)
.||..... .... .. ...+.+.+++.++..+++...+........ .+..+.+++.+.|.|-.+..+.
T Consensus 159 ~atn~~~~l~~~L~~R~~~~i~l~~~~~~e~~~il~~~~~~~~~~~~----~~~~~~l~~~~~G~~r~l~~~l 227 (338)
T 3pfi_A 159 GATTRAGMLSNPLRDRFGMQFRLEFYKDSELALILQKAALKLNKTCE----EKAALEIAKRSRSTPRIALRLL 227 (338)
T ss_dssp EEESCGGGSCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHTTCEEC----HHHHHHHHHTTTTCHHHHHHHH
T ss_pred EeCCCccccCHHHHhhcCEEeeCCCcCHHHHHHHHHHHHHhcCCCCC----HHHHHHHHHHHCcCHHHHHHHH
Confidence 66554321 1111 11 357999999999999999887643222111 2346678888999996555443
No 177
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=98.36 E-value=4.4e-06 Score=92.29 Aligned_cols=181 Identities=18% Similarity=0.193 Sum_probs=104.0
Q ss_pred CCceecchhhH---HHHHHHHhccCcccCCCeEEEEEEccCCChHHHHHHHHhhhhhhhcccCeEEEEEeCCCCCHHHHH
Q 002308 149 EEEICGRVGER---NALLSMLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNHVEVKREFDKTLWVCVSETFDEFRIA 225 (938)
Q Consensus 149 ~~~~vGr~~~~---~~l~~~l~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~ 225 (938)
-..++|.+..+ ..+...+... ....+.|+|++|+||||+|+.+++. ....| +.+++. ......+
T Consensus 25 l~~ivGq~~~~~~~~~L~~~i~~~------~~~~vLL~GppGtGKTtlAr~ia~~--~~~~f---~~l~a~-~~~~~~i- 91 (447)
T 3pvs_A 25 LAQYIGQQHLLAAGKPLPRAIEAG------HLHSMILWGPPGTGKTTLAEVIARY--ANADV---ERISAV-TSGVKEI- 91 (447)
T ss_dssp TTTCCSCHHHHSTTSHHHHHHHHT------CCCEEEEECSTTSSHHHHHHHHHHH--TTCEE---EEEETT-TCCHHHH-
T ss_pred HHHhCCcHHHHhchHHHHHHHHcC------CCcEEEEECCCCCcHHHHHHHHHHH--hCCCe---EEEEec-cCCHHHH-
Confidence 35689998877 6777777642 3467899999999999999999983 33332 112221 1122221
Q ss_pred HHHHHHhcCCCCCCCcHHHHHHHHHHHhcCceEEEEEecCCCCCccChhHHHHhhhCCCCCcEEE-EEcCChh--hhh-h
Q 002308 226 KAMLEALTGSTSNLNALQSLLISIDESIAGKRFLLVLDDVWDGDYIKWEPFYRCLKKGLHGSKIL-ITTRKES--IVS-M 301 (938)
Q Consensus 226 ~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~il-vTtr~~~--v~~-~ 301 (938)
+.++... ......+++.+|++|+++.......+.+...+..+ ...+| .||.+.. +.. .
T Consensus 92 r~~~~~a----------------~~~~~~~~~~iLfIDEI~~l~~~~q~~LL~~le~~--~v~lI~att~n~~~~l~~aL 153 (447)
T 3pvs_A 92 REAIERA----------------RQNRNAGRRTILFVDEVHRFNKSQQDAFLPHIEDG--TITFIGATTENPSFELNSAL 153 (447)
T ss_dssp HHHHHHH----------------HHHHHTTCCEEEEEETTTCC------CCHHHHHTT--SCEEEEEESSCGGGSSCHHH
T ss_pred HHHHHHH----------------HHhhhcCCCcEEEEeChhhhCHHHHHHHHHHHhcC--ceEEEecCCCCcccccCHHH
Confidence 1111110 01112467889999999876555556667666652 22333 3555542 111 1
Q ss_pred hcCCceEeCCCCChHHHHHHHHHhhcCCCCC---chhhHHHHHHHHHHHhcCCChhHHHHHH
Q 002308 302 MRSTDIISIEELAEEECWVLFKRLAFFGRST---EECEKLEQIGQRIARKCKGLPLAAKTMG 360 (938)
Q Consensus 302 ~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~---~~~~~~~~~~~~i~~~~~g~Plai~~~~ 360 (938)
......+.+.+++.++..+++.+.+...... ....-..+..+.+++.++|.+..+..+.
T Consensus 154 ~sR~~v~~l~~l~~edi~~il~~~l~~~~~~~~~~~~~i~~~al~~L~~~~~Gd~R~lln~L 215 (447)
T 3pvs_A 154 LSRARVYLLKSLSTEDIEQVLTQAMEDKTRGYGGQDIVLPDETRRAIAELVNGDARRALNTL 215 (447)
T ss_dssp HTTEEEEECCCCCHHHHHHHHHHHHHCTTTSSTTSSEECCHHHHHHHHHHHCSCHHHHHHHH
T ss_pred hCceeEEeeCCcCHHHHHHHHHHHHHHHhhhhccccCcCCHHHHHHHHHHCCCCHHHHHHHH
Confidence 2334588999999999999998876431100 0111223346778888999886554433
No 178
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.36 E-value=2.3e-06 Score=97.24 Aligned_cols=198 Identities=15% Similarity=0.163 Sum_probs=110.1
Q ss_pred CCceecchhhHHHHHHHHhccCcc-----------cCCCeEEEEEEccCCChHHHHHHHHhhhhhhhcccCeEEEEEeCC
Q 002308 149 EEEICGRVGERNALLSMLLCESSE-----------QQKGLHIISIVGMGGIGKTTLAQLACNHVEVKREFDKTLWVCVSE 217 (938)
Q Consensus 149 ~~~~vGr~~~~~~l~~~l~~~~~~-----------~~~~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~ 217 (938)
-..++|++..++++..++...... +.+..+.+.|+|++|+|||++|+.+++.. . + .++.++++.
T Consensus 38 ~~dliG~~~~~~~L~~~l~~~~~~~~~~~~~~g~~~~~~~~~lLL~GppGtGKTtla~~la~~l--~--~-~~i~in~s~ 112 (516)
T 1sxj_A 38 LQQVCGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQEL--G--Y-DILEQNASD 112 (516)
T ss_dssp GGGCCSCHHHHHHHHHHHHTHHHHHHTTTCCCCTTSTTSCSEEEEECSTTSSHHHHHHHHHHHT--T--C-EEEEECTTS
T ss_pred HHHhcCCHHHHHHHHHHHHHhHhhchhhccccCccCCCCCcEEEEECCCCCCHHHHHHHHHHHc--C--C-CEEEEeCCC
Confidence 457999999999999999752100 01234689999999999999999998842 1 2 234455554
Q ss_pred CCCHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHhcCceEEEEEecCCCCCccC---hhHHHHhhhCCCCCcEEEEEcC
Q 002308 218 TFDEFRIAKAMLEALTGSTSNLNALQSLLISIDESIAGKRFLLVLDDVWDGDYIK---WEPFYRCLKKGLHGSKILITTR 294 (938)
Q Consensus 218 ~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~~~~---~~~l~~~l~~~~~gs~ilvTtr 294 (938)
..... +....+........-..-...... .....+++.+||+|+++...... +..+...+... +..||+++.
T Consensus 113 ~~~~~-~~~~~i~~~~~~~~~~~~~~~~~~--~~~~~~~~~vliIDEid~l~~~~~~~l~~L~~~l~~~--~~~iIli~~ 187 (516)
T 1sxj_A 113 VRSKT-LLNAGVKNALDNMSVVGYFKHNEE--AQNLNGKHFVIIMDEVDGMSGGDRGGVGQLAQFCRKT--STPLILICN 187 (516)
T ss_dssp CCCHH-HHHHTGGGGTTBCCSTTTTTC------CCSSTTSEEEEECSGGGCCTTSTTHHHHHHHHHHHC--SSCEEEEES
T ss_pred cchHH-HHHHHHHHHhccccHHHHHhhhhh--hhhccCCCeEEEEECCCccchhhHHHHHHHHHHHHhc--CCCEEEEEc
Confidence 43332 222222222111000000000000 00113578899999997643222 24455555442 333555554
Q ss_pred Chh---hhhhhcCCceEeCCCCChHHHHHHHHHhhcCCCCCchhhHHHHHHHHHHHhcCCCh-hHHHHHH
Q 002308 295 KES---IVSMMRSTDIISIEELAEEECWVLFKRLAFFGRSTEECEKLEQIGQRIARKCKGLP-LAAKTMG 360 (938)
Q Consensus 295 ~~~---v~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~P-lai~~~~ 360 (938)
... +.........+.+.+++.++..+++...+........+ +....|++.++|.+ -++..+.
T Consensus 188 ~~~~~~l~~l~~r~~~i~f~~~~~~~~~~~L~~i~~~~~~~i~~----~~l~~la~~s~GdiR~~i~~L~ 253 (516)
T 1sxj_A 188 ERNLPKMRPFDRVCLDIQFRRPDANSIKSRLMTIAIREKFKLDP----NVIDRLIQTTRGDIRQVINLLS 253 (516)
T ss_dssp CTTSSTTGGGTTTSEEEECCCCCHHHHHHHHHHHHHHHTCCCCT----THHHHHHHHTTTCHHHHHHHHT
T ss_pred CCCCccchhhHhceEEEEeCCCCHHHHHHHHHHHHHHcCCCCCH----HHHHHHHHHcCCcHHHHHHHHH
Confidence 322 22222334578999999999999888766432222222 23567888899854 4454443
No 179
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=98.34 E-value=9e-06 Score=88.61 Aligned_cols=200 Identities=17% Similarity=0.140 Sum_probs=108.5
Q ss_pred CCceecchhhHHH---HHHHHhccCcccCCCeEEEEEEccCCChHHHHHHHHhhhhhhhcccCeEEEEEe----CCCCCH
Q 002308 149 EEEICGRVGERNA---LLSMLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNHVEVKREFDKTLWVCV----SETFDE 221 (938)
Q Consensus 149 ~~~~vGr~~~~~~---l~~~l~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~----~~~~~~ 221 (938)
.+.|+|++...+. +...+.... ...+.+.|+|++|+|||++|+.+++.. .... ..+.+.. +.....
T Consensus 43 ~~~ivG~~~~~~~l~~l~~~~~~~~----~~~~~vLl~GppGtGKT~la~~la~~l--~~~~-~~~~~~~~~~~~~~~~~ 115 (368)
T 3uk6_A 43 SQGMVGQLAARRAAGVVLEMIREGK----IAGRAVLIAGQPGTGKTAIAMGMAQAL--GPDT-PFTAIAGSEIFSLEMSK 115 (368)
T ss_dssp ETTEESCHHHHHHHHHHHHHHHTTC----CTTCEEEEEESTTSSHHHHHHHHHHHH--CSSC-CEEEEEGGGGSCSSSCH
T ss_pred hhhccChHHHHHHHHHHHHHHHcCC----CCCCEEEEECCCCCCHHHHHHHHHHHh--cccC-Ccccccchhhhhcccch
Confidence 3579999988766 444444322 234688999999999999999999843 2211 1122222 223344
Q ss_pred HHHHHHHHHHhcCC---------------------C-------CC--CCcHHHHHHHHHHHh-----cCc----eEEEEE
Q 002308 222 FRIAKAMLEALTGS---------------------T-------SN--LNALQSLLISIDESI-----AGK----RFLLVL 262 (938)
Q Consensus 222 ~~~~~~i~~~l~~~---------------------~-------~~--~~~~~~~~~~l~~~l-----~~~----~~LlVl 262 (938)
...+.+........ . .. ..........+.... .++ +.+|++
T Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ld~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~vl~I 195 (368)
T 3uk6_A 116 TEALTQAFRRSIGVRIKAGAVHTVSLHEIDVINSRTQGFLALFSGDTGEIKSEVREQINAKVAEWREEGKAEIIPGVLFI 195 (368)
T ss_dssp HHHHHHHHHHSBEECC------CEEHHHHHHHTC----CCSCC-------CHHHHHHHHHHHHHHHHHTC---CBCEEEE
T ss_pred hHHHHHHHHHHHHHHhhhhccccccHhhhhhhhcccccchhhccCcccccHHHHHHHHHHHHHHhhhhccccccCceEEE
Confidence 44444443331110 0 00 000122222222211 233 359999
Q ss_pred ecCCCCCccChhHHHHhhhCCCCCcEEEEEcCC------------h-hhhh-hhcCCceEeCCCCChHHHHHHHHHhhcC
Q 002308 263 DDVWDGDYIKWEPFYRCLKKGLHGSKILITTRK------------E-SIVS-MMRSTDIISIEELAEEECWVLFKRLAFF 328 (938)
Q Consensus 263 Ddv~~~~~~~~~~l~~~l~~~~~gs~ilvTtr~------------~-~v~~-~~~~~~~~~l~~L~~~~~~~lf~~~~~~ 328 (938)
|++..........+...+...... .++++|.. . .+.. .......+.+.+++.++..+++...+..
T Consensus 196 DEi~~l~~~~~~~L~~~le~~~~~-~~ii~t~~~~~~i~~t~~~~~~~l~~~l~sR~~~i~~~~~~~~e~~~il~~~~~~ 274 (368)
T 3uk6_A 196 DEVHMLDIESFSFLNRALESDMAP-VLIMATNRGITRIRGTSYQSPHGIPIDLLDRLLIVSTTPYSEKDTKQILRIRCEE 274 (368)
T ss_dssp ESGGGSBHHHHHHHHHHTTCTTCC-EEEEEESCSEEECBTSSCEEETTCCHHHHTTEEEEEECCCCHHHHHHHHHHHHHH
T ss_pred hhccccChHHHHHHHHHhhCcCCC-eeeeecccceeeeeccCCCCcccCCHHHHhhccEEEecCCCHHHHHHHHHHHHHH
Confidence 999876655556666666554333 34444431 1 1111 1122345899999999999999987653
Q ss_pred CCCCchhhHHHHHHHHHHHhcC-CChhHHHHHH
Q 002308 329 GRSTEECEKLEQIGQRIARKCK-GLPLAAKTMG 360 (938)
Q Consensus 329 ~~~~~~~~~~~~~~~~i~~~~~-g~Plai~~~~ 360 (938)
...... .+..+.|++.+. |.|..+..+.
T Consensus 275 ~~~~~~----~~~l~~l~~~~~~G~~r~~~~ll 303 (368)
T 3uk6_A 275 EDVEMS----EDAYTVLTRIGLETSLRYAIQLI 303 (368)
T ss_dssp TTCCBC----HHHHHHHHHHHHHSCHHHHHHHH
T ss_pred cCCCCC----HHHHHHHHHHhcCCCHHHHHHHH
Confidence 322222 234667888887 7776655444
No 180
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.29 E-value=4.4e-07 Score=97.51 Aligned_cols=39 Identities=10% Similarity=0.041 Sum_probs=21.1
Q ss_pred CCCCCCeEEEeeecCCCC----CCCchhccCCCCEEEEecCCC
Q 002308 755 PPLNLKELEIHYYGGNTV----FPSWMASLTNLKSLDLCFCEN 793 (938)
Q Consensus 755 ~~~~L~~L~l~~~~~~~~----~p~~~~~l~~L~~L~L~~~~~ 793 (938)
.+++|++|+|+.|.+... ++..+..+++|+.|+|++|.+
T Consensus 277 ~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i 319 (362)
T 2ra8_A 277 ILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYL 319 (362)
T ss_dssp SGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBC
T ss_pred cCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcC
Confidence 345666666665554431 233334566677777766644
No 181
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=98.27 E-value=1.7e-05 Score=84.75 Aligned_cols=171 Identities=13% Similarity=0.110 Sum_probs=105.0
Q ss_pred hhhHHHHHHHHhccCcccCCCeEEEEEEccCCChHHHHHHHHhhhhhhhc--------------------ccCeEEEEEe
Q 002308 156 VGERNALLSMLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNHVEVKR--------------------EFDKTLWVCV 215 (938)
Q Consensus 156 ~~~~~~l~~~l~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~--------------------~f~~~~wv~~ 215 (938)
++..+.+...+... .-.+.+.++|++|+|||++|+.+++...-.. +++ ..++..
T Consensus 8 ~~~~~~l~~~i~~~-----~~~~a~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~d-~~~~~~ 81 (334)
T 1a5t_A 8 RPDFEKLVASYQAG-----RGHHALLIQALPGMGDDALIYALSRYLLCQQPQGHKSCGHCRGCQLMQAGTHPD-YYTLAP 81 (334)
T ss_dssp HHHHHHHHHHHHTT-----CCCSEEEEECCTTSCHHHHHHHHHHHHTCSSCBTTBCCSCSHHHHHHHHTCCTT-EEEECC
T ss_pred HHHHHHHHHHHHcC-----CcceeEEEECCCCchHHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCCCC-EEEEec
Confidence 44566677776542 2346789999999999999999987421111 111 222222
Q ss_pred CCCCCHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHh-----cCceEEEEEecCCCCCccChhHHHHhhhCCCCCcEEE
Q 002308 216 SETFDEFRIAKAMLEALTGSTSNLNALQSLLISIDESI-----AGKRFLLVLDDVWDGDYIKWEPFYRCLKKGLHGSKIL 290 (938)
Q Consensus 216 ~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l-----~~~~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~il 290 (938)
.. .......++... +.+.+ .+++-++|+|+++.......+.+...+.....++.+|
T Consensus 82 ~~------------------~~~~~~i~~ir~-l~~~~~~~~~~~~~kvviIdead~l~~~a~naLLk~lEep~~~~~~I 142 (334)
T 1a5t_A 82 EK------------------GKNTLGVDAVRE-VTEKLNEHARLGGAKVVWVTDAALLTDAAANALLKTLEEPPAETWFF 142 (334)
T ss_dssp CT------------------TCSSBCHHHHHH-HHHHTTSCCTTSSCEEEEESCGGGBCHHHHHHHHHHHTSCCTTEEEE
T ss_pred cc------------------cCCCCCHHHHHH-HHHHHhhccccCCcEEEEECchhhcCHHHHHHHHHHhcCCCCCeEEE
Confidence 10 001112222222 22221 2567799999998765555666777777655667777
Q ss_pred EEcCChh-hhhh-hcCCceEeCCCCChHHHHHHHHHhhcCCCCCchhhHHHHHHHHHHHhcCCChhHHHHHH
Q 002308 291 ITTRKES-IVSM-MRSTDIISIEELAEEECWVLFKRLAFFGRSTEECEKLEQIGQRIARKCKGLPLAAKTMG 360 (938)
Q Consensus 291 vTtr~~~-v~~~-~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~~~ 360 (938)
++|.++. +... ......+.+.+++.++..+.+.... . .. .+.+..+++.++|.|..+..+.
T Consensus 143 l~t~~~~~l~~ti~SRc~~~~~~~~~~~~~~~~L~~~~---~--~~----~~~~~~l~~~s~G~~r~a~~~l 205 (334)
T 1a5t_A 143 LATREPERLLATLRSRCRLHYLAPPPEQYAVTWLSREV---T--MS----QDALLAALRLSAGSPGAALALF 205 (334)
T ss_dssp EEESCGGGSCHHHHTTSEEEECCCCCHHHHHHHHHHHC---C--CC----HHHHHHHHHHTTTCHHHHHHTT
T ss_pred EEeCChHhCcHHHhhcceeeeCCCCCHHHHHHHHHHhc---C--CC----HHHHHHHHHHcCCCHHHHHHHh
Confidence 7776653 3222 2345689999999999999998875 1 11 1235678899999998665543
No 182
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=98.25 E-value=6.9e-06 Score=87.68 Aligned_cols=180 Identities=15% Similarity=0.112 Sum_probs=105.7
Q ss_pred CCceecchhhHHHHHHHHhccCcccCCCeEEEEEEccCCChHHHHHHHHhhhhhhhcccCeEEEEEeCCCCCHHHHHHHH
Q 002308 149 EEEICGRVGERNALLSMLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNHVEVKREFDKTLWVCVSETFDEFRIAKAM 228 (938)
Q Consensus 149 ~~~~vGr~~~~~~l~~~l~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i 228 (938)
-+.++|++..++.+..++.... ...++.++|++|+|||++|+.+++. .. ..++.++.+. ..... .+..
T Consensus 25 ~~~ivg~~~~~~~l~~~l~~~~-----~~~~~L~~G~~G~GKT~la~~la~~--l~---~~~~~i~~~~-~~~~~-i~~~ 92 (324)
T 3u61_B 25 IDECILPAFDKETFKSITSKGK-----IPHIILHSPSPGTGKTTVAKALCHD--VN---ADMMFVNGSD-CKIDF-VRGP 92 (324)
T ss_dssp TTTSCCCHHHHHHHHHHHHTTC-----CCSEEEECSSTTSSHHHHHHHHHHH--TT---EEEEEEETTT-CCHHH-HHTH
T ss_pred HHHHhCcHHHHHHHHHHHHcCC-----CCeEEEeeCcCCCCHHHHHHHHHHH--hC---CCEEEEcccc-cCHHH-HHHH
Confidence 4679999999999999997432 3467888899999999999999884 32 2244555433 22222 2222
Q ss_pred HHHhcCCCCCCCcHHHHHHHHHHHhcCceEEEEEecCCCCC-ccChhHHHHhhhCCCCCcEEEEEcCChhh-hhh-hcCC
Q 002308 229 LEALTGSTSNLNALQSLLISIDESIAGKRFLLVLDDVWDGD-YIKWEPFYRCLKKGLHGSKILITTRKESI-VSM-MRST 305 (938)
Q Consensus 229 ~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~-~~~~~~l~~~l~~~~~gs~ilvTtr~~~v-~~~-~~~~ 305 (938)
+....... ...+++-++|+||++... ......+...+.....+.++|+||....- ... ....
T Consensus 93 ~~~~~~~~---------------~~~~~~~vliiDEi~~l~~~~~~~~L~~~le~~~~~~~iI~~~n~~~~l~~~l~sR~ 157 (324)
T 3u61_B 93 LTNFASAA---------------SFDGRQKVIVIDEFDRSGLAESQRHLRSFMEAYSSNCSIIITANNIDGIIKPLQSRC 157 (324)
T ss_dssp HHHHHHBC---------------CCSSCEEEEEEESCCCGGGHHHHHHHHHHHHHHGGGCEEEEEESSGGGSCTTHHHHS
T ss_pred HHHHHhhc---------------ccCCCCeEEEEECCcccCcHHHHHHHHHHHHhCCCCcEEEEEeCCccccCHHHHhhC
Confidence 21111000 012467899999998764 44455566665544456678888776431 111 1123
Q ss_pred ceEeCCCCChHHHHHHHH-------HhhcCCCCCchhhHHHHHHHHHHHhcCCChhHHHH
Q 002308 306 DIISIEELAEEECWVLFK-------RLAFFGRSTEECEKLEQIGQRIARKCKGLPLAAKT 358 (938)
Q Consensus 306 ~~~~l~~L~~~~~~~lf~-------~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~ 358 (938)
..+.+.+++.++..+++. ..+......... .+....+++.++|.+..+..
T Consensus 158 ~~i~~~~~~~~e~~~il~~~~~~l~~~~~~~~~~~~~---~~~~~~l~~~~~gd~R~a~~ 214 (324)
T 3u61_B 158 RVITFGQPTDEDKIEMMKQMIRRLTEICKHEGIAIAD---MKVVAALVKKNFPDFRKTIG 214 (324)
T ss_dssp EEEECCCCCHHHHHHHHHHHHHHHHHHHHHHTCCBSC---HHHHHHHHHHTCSCTTHHHH
T ss_pred cEEEeCCCCHHHHHHHHHHHHHHHHHHHHHcCCCCCc---HHHHHHHHHhCCCCHHHHHH
Confidence 579999999888543332 222111111111 14466788888887765433
No 183
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.25 E-value=1e-07 Score=102.44 Aligned_cols=116 Identities=16% Similarity=0.159 Sum_probs=65.0
Q ss_pred cccccCceeEEeccCCCCCCCCch---hhHHHHHhccCCCeeEEecCCCCCCcccCccccccCCCCeeeecCCccc-ccc
Q 002308 533 STCRAKRIRSLLIEWPEFGHSSLN---GEILEELFRESTSLRALDFPSFYLPLEIPRNIEKLVHLRYLNLSDQKIK-KLP 608 (938)
Q Consensus 533 ~~~~~~~Lr~L~l~~~~~~~~~~~---~~~~~~~~~~~~~Lr~L~L~~n~~~~~lp~~~~~l~~L~~L~L~~~~i~-~lp 608 (938)
+..++++|++|.+.........+. ..-+..++..+++|+.|+|++|. ...++. +. +++|++|+|..|.+. ...
T Consensus 134 s~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~-~l~l~~-~~-~~~L~~L~L~~~~l~~~~l 210 (362)
T 2ra8_A 134 NKEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTN-NLSIGK-KP-RPNLKSLEIISGGLPDSVV 210 (362)
T ss_dssp THHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCB-TCBCCS-CB-CTTCSEEEEECSBCCHHHH
T ss_pred hhhhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCC-Cceecc-cc-CCCCcEEEEecCCCChHHH
Confidence 345667777777754432211110 00133456778899999998874 223443 33 778999998888765 222
Q ss_pred cccc--CCCCccEEEcCCCCC-------cccccccc--cccCccceeecCCCcc
Q 002308 609 ETLC--ELYNLEKLDISGCSD-------LRELPKGI--GKLINMKHLLNSGTRS 651 (938)
Q Consensus 609 ~~i~--~l~~L~~L~l~~~~~-------l~~lp~~i--~~l~~L~~L~l~~~~~ 651 (938)
..+. .+++|+.|+|+.+.. ...+...+ ..+++|++|++.+|..
T Consensus 211 ~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i 264 (362)
T 2ra8_A 211 EDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEE 264 (362)
T ss_dssp HHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCTT
T ss_pred HHHHHccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCCC
Confidence 2333 688888888853210 11111112 2356777777766644
No 184
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=98.20 E-value=2.6e-05 Score=82.50 Aligned_cols=162 Identities=13% Similarity=0.100 Sum_probs=91.0
Q ss_pred ceecchhhHHHHHHHHhccCc---------ccCCCeEEEEEEccCCChHHHHHHHHhhhhhhhcccCeEEEEEeCCCCCH
Q 002308 151 EICGRVGERNALLSMLLCESS---------EQQKGLHIISIVGMGGIGKTTLAQLACNHVEVKREFDKTLWVCVSETFDE 221 (938)
Q Consensus 151 ~~vGr~~~~~~l~~~l~~~~~---------~~~~~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~ 221 (938)
.++|.+...+.+.+.+..... ........+.|+|++|+|||++|+.+++...........-++.+...
T Consensus 32 ~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~vll~G~~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~--- 108 (309)
T 3syl_A 32 ELIGLKPVKDRIRETAALLLVERARQKLGLAHETPTLHMSFTGNPGTGKTTVALKMAGLLHRLGYVRKGHLVSVTRD--- 108 (309)
T ss_dssp HSSSCHHHHHHHHHHHHHHHHHHHHHHHTCCSSCCCCEEEEEECTTSSHHHHHHHHHHHHHHTTSSSSCCEEEECGG---
T ss_pred HccChHHHHHHHHHHHHHHHhHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHhcCCcCCCcEEEEcHH---
Confidence 478888888877766542100 00224457899999999999999998885322222211123333210
Q ss_pred HHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHhcCceEEEEEecCCCC---------CccChhHHHHhhhCCCCCcEEEEE
Q 002308 222 FRIAKAMLEALTGSTSNLNALQSLLISIDESIAGKRFLLVLDDVWDG---------DYIKWEPFYRCLKKGLHGSKILIT 292 (938)
Q Consensus 222 ~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~---------~~~~~~~l~~~l~~~~~gs~ilvT 292 (938)
.+..... ..........+... +.-+|++|+++.. .......+...+.....+..||.|
T Consensus 109 ---------~l~~~~~-g~~~~~~~~~~~~~---~~~vl~iDEid~l~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~~i~~ 175 (309)
T 3syl_A 109 ---------DLVGQYI-GHTAPKTKEVLKRA---MGGVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENNRDDLVVILA 175 (309)
T ss_dssp ---------GTCCSST-TCHHHHHHHHHHHH---TTSEEEEETGGGSCCCC---CCTHHHHHHHHHHHHHCTTTCEEEEE
T ss_pred ---------Hhhhhcc-cccHHHHHHHHHhc---CCCEEEEEChhhhccCCCcccccHHHHHHHHHHHhcCCCCEEEEEe
Confidence 0111000 01111122222222 2349999999743 333345566666666667778888
Q ss_pred cCChhhhhh-------hc-CCceEeCCCCChHHHHHHHHHhhcC
Q 002308 293 TRKESIVSM-------MR-STDIISIEELAEEECWVLFKRLAFF 328 (938)
Q Consensus 293 tr~~~v~~~-------~~-~~~~~~l~~L~~~~~~~lf~~~~~~ 328 (938)
|........ .. ....+.+.+++.++..+++..++..
T Consensus 176 ~~~~~~~~~~~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~l~~ 219 (309)
T 3syl_A 176 GYADRMENFFQSNPGFRSRIAHHIEFPDYSDEELFEIAGHMLDD 219 (309)
T ss_dssp ECHHHHHHHHHHSTTHHHHEEEEEEECCCCHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHhhCHHHHHhCCeEEEcCCcCHHHHHHHHHHHHHH
Confidence 764322111 01 1267899999999999999887643
No 185
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=98.18 E-value=2.2e-05 Score=83.72 Aligned_cols=155 Identities=19% Similarity=0.187 Sum_probs=87.8
Q ss_pred eEEEEEEccCCChHHHHHHHHhhhhhhhcccCeEEEEEeCCCCCHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHhcCc
Q 002308 177 LHIISIVGMGGIGKTTLAQLACNHVEVKREFDKTLWVCVSETFDEFRIAKAMLEALTGSTSNLNALQSLLISIDESIAGK 256 (938)
Q Consensus 177 ~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~ 256 (938)
...+.|+|++|+||||||+.+++..... . ..++++++. .+...+...+... .... +..... +
T Consensus 37 ~~~lll~G~~GtGKT~la~~i~~~~~~~-~-~~~~~i~~~------~~~~~~~~~~~~~-----~~~~----~~~~~~-~ 98 (324)
T 1l8q_A 37 YNPIFIYGSVGTGKTHLLQAAGNEAKKR-G-YRVIYSSAD------DFAQAMVEHLKKG-----TINE----FRNMYK-S 98 (324)
T ss_dssp CSSEEEECSSSSSHHHHHHHHHHHHHHT-T-CCEEEEEHH------HHHHHHHHHHHHT-----CHHH----HHHHHH-T
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHHHC-C-CEEEEEEHH------HHHHHHHHHHHcC-----cHHH----HHHHhc-C
Confidence 4578999999999999999999853211 1 234555532 3334444433211 1111 122222 3
Q ss_pred eEEEEEecCCCCCc--cChhHHHHhhhC-CCCCcEEEEEcCChh---------hhhhhcCCceEeCCCCChHHHHHHHHH
Q 002308 257 RFLLVLDDVWDGDY--IKWEPFYRCLKK-GLHGSKILITTRKES---------IVSMMRSTDIISIEELAEEECWVLFKR 324 (938)
Q Consensus 257 ~~LlVlDdv~~~~~--~~~~~l~~~l~~-~~~gs~ilvTtr~~~---------v~~~~~~~~~~~l~~L~~~~~~~lf~~ 324 (938)
.-+|++||+..... .....+...+.. ...|..||+||.+.. +...+.....+.+.+ +.++..+++..
T Consensus 99 ~~vL~iDEi~~l~~~~~~~~~l~~~l~~~~~~~~~iii~~~~~~~~l~~l~~~L~sR~~~~~~i~l~~-~~~e~~~il~~ 177 (324)
T 1l8q_A 99 VDLLLLDDVQFLSGKERTQIEFFHIFNTLYLLEKQIILASDRHPQKLDGVSDRLVSRFEGGILVEIEL-DNKTRFKIIKE 177 (324)
T ss_dssp CSEEEEECGGGGTTCHHHHHHHHHHHHHHHHTTCEEEEEESSCGGGCTTSCHHHHHHHHTSEEEECCC-CHHHHHHHHHH
T ss_pred CCEEEEcCcccccCChHHHHHHHHHHHHHHHCCCeEEEEecCChHHHHHhhhHhhhcccCceEEEeCC-CHHHHHHHHHH
Confidence 56999999976432 112334444332 124557888776431 222223335789999 99999999998
Q ss_pred hhcCCCCCchhhHHHHHHHHHHHhcCCChhH
Q 002308 325 LAFFGRSTEECEKLEQIGQRIARKCKGLPLA 355 (938)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pla 355 (938)
.+........ .+....|++.+ |..-.
T Consensus 178 ~~~~~~~~l~----~~~l~~l~~~~-g~~r~ 203 (324)
T 1l8q_A 178 KLKEFNLELR----KEVIDYLLENT-KNVRE 203 (324)
T ss_dssp HHHHTTCCCC----HHHHHHHHHHC-SSHHH
T ss_pred HHHhcCCCCC----HHHHHHHHHhC-CCHHH
Confidence 8743222111 23356777777 76543
No 186
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.17 E-value=3.2e-05 Score=83.01 Aligned_cols=182 Identities=9% Similarity=0.086 Sum_probs=106.7
Q ss_pred CceecchhhHHHHHHHHhccCcccCCCeEEEEEEccCCChHHHHHHHHhhhhhhhcccC-eEEEEEeCCCCCHHHHHHHH
Q 002308 150 EEICGRVGERNALLSMLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNHVEVKREFD-KTLWVCVSETFDEFRIAKAM 228 (938)
Q Consensus 150 ~~~vGr~~~~~~l~~~l~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~-~~~wv~~~~~~~~~~~~~~i 228 (938)
..++|.+..++.+...+.... ...+.++|++|+||||+|+.++.... ...+. .+..++.+.......+. ++
T Consensus 25 ~~~~g~~~~~~~L~~~i~~g~------~~~~ll~Gp~G~GKTtla~~la~~l~-~~~~~~~~~~~~~~~~~~~~~ir-~~ 96 (340)
T 1sxj_C 25 DEVYGQNEVITTVRKFVDEGK------LPHLLFYGPPGTGKTSTIVALAREIY-GKNYSNMVLELNASDDRGIDVVR-NQ 96 (340)
T ss_dssp GGCCSCHHHHHHHHHHHHTTC------CCCEEEECSSSSSHHHHHHHHHHHHH-TTSHHHHEEEECTTSCCSHHHHH-TH
T ss_pred HHhcCcHHHHHHHHHHHhcCC------CceEEEECCCCCCHHHHHHHHHHHHc-CCCccceEEEEcCcccccHHHHH-HH
Confidence 457899888888888887432 22389999999999999999988421 11111 12223333222222111 11
Q ss_pred HHHhcCCCCCCCcHHHHHHHHHHHhcCceEEEEEecCCCCCccChhHHHHhhhCCCCCcEEEEEcCChh-hhhh-hcCCc
Q 002308 229 LEALTGSTSNLNALQSLLISIDESIAGKRFLLVLDDVWDGDYIKWEPFYRCLKKGLHGSKILITTRKES-IVSM-MRSTD 306 (938)
Q Consensus 229 ~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtr~~~-v~~~-~~~~~ 306 (938)
+..+..... ...+.+-++|+|+++.......+.+...+.......++|++|.... +... .....
T Consensus 97 i~~~~~~~~--------------~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~il~~n~~~~i~~~i~sR~~ 162 (340)
T 1sxj_C 97 IKDFASTRQ--------------IFSKGFKLIILDEADAMTNAAQNALRRVIERYTKNTRFCVLANYAHKLTPALLSQCT 162 (340)
T ss_dssp HHHHHHBCC--------------SSSCSCEEEEETTGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHTTSE
T ss_pred HHHHHhhcc--------------cCCCCceEEEEeCCCCCCHHHHHHHHHHHhcCCCCeEEEEEecCccccchhHHhhce
Confidence 111110000 0123467899999976554455666666665555667777765442 2111 22345
Q ss_pred eEeCCCCChHHHHHHHHHhhcCCCCCchhhHHHHHHHHHHHhcCCChhHHH
Q 002308 307 IISIEELAEEECWVLFKRLAFFGRSTEECEKLEQIGQRIARKCKGLPLAAK 357 (938)
Q Consensus 307 ~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~ 357 (938)
.+.+.+++.++..+.+...+........ .+..+.+++.++|.+--+.
T Consensus 163 ~~~~~~l~~~~~~~~l~~~~~~~~~~i~----~~~~~~i~~~s~G~~r~~~ 209 (340)
T 1sxj_C 163 RFRFQPLPQEAIERRIANVLVHEKLKLS----PNAEKALIELSNGDMRRVL 209 (340)
T ss_dssp EEECCCCCHHHHHHHHHHHHHTTTCCBC----HHHHHHHHHHHTTCHHHHH
T ss_pred eEeccCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCCHHHHH
Confidence 7899999999998888876632222111 2236678888999887543
No 187
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=98.14 E-value=4.6e-06 Score=76.88 Aligned_cols=114 Identities=14% Similarity=-0.032 Sum_probs=70.1
Q ss_pred ceecchhhHHHHHHHHhccCcccCCCeEEEEEEccCCChHHHHHHHHhhhhhhhcccCeEEEEEeCCCCCHHHHHHHHHH
Q 002308 151 EICGRVGERNALLSMLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNHVEVKREFDKTLWVCVSETFDEFRIAKAMLE 230 (938)
Q Consensus 151 ~~vGr~~~~~~l~~~l~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~ 230 (938)
.++|+...+.++.+.+..-.. ....|.|+|++|+|||++|+.+++... +.... .+ ++++...+.
T Consensus 2 ~iiG~s~~~~~~~~~~~~~a~----~~~~vll~G~~GtGKt~lA~~i~~~~~-~~~~~-~v-~~~~~~~~~--------- 65 (145)
T 3n70_A 2 ELIGRSEWINQYRRRLQQLSE----TDIAVWLYGAPGTGRMTGARYLHQFGR-NAQGE-FV-YRELTPDNA--------- 65 (145)
T ss_dssp --CCSSHHHHHHHHHHHHHTT----CCSCEEEESSTTSSHHHHHHHHHHSST-TTTSC-CE-EEECCTTTS---------
T ss_pred CceeCCHHHHHHHHHHHHHhC----CCCCEEEECCCCCCHHHHHHHHHHhCC-ccCCC-EE-EECCCCCcc---------
Confidence 578999999999888764321 233578999999999999999987421 11122 23 665543221
Q ss_pred HhcCCCCCCCcHHHHHHHHHHHhcCceEEEEEecCCCCCccChhHHHHhhhCCCCCcEEEEEcCC
Q 002308 231 ALTGSTSNLNALQSLLISIDESIAGKRFLLVLDDVWDGDYIKWEPFYRCLKKGLHGSKILITTRK 295 (938)
Q Consensus 231 ~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtr~ 295 (938)
.... ..+... ..-.|++|+++.........+...+.......+||.||..
T Consensus 66 ---------~~~~---~~~~~a---~~g~l~ldei~~l~~~~q~~Ll~~l~~~~~~~~~I~~t~~ 115 (145)
T 3n70_A 66 ---------PQLN---DFIALA---QGGTLVLSHPEHLTREQQYHLVQLQSQEHRPFRLIGIGDT 115 (145)
T ss_dssp ---------SCHH---HHHHHH---TTSCEEEECGGGSCHHHHHHHHHHHHSSSCSSCEEEEESS
T ss_pred ---------hhhh---cHHHHc---CCcEEEEcChHHCCHHHHHHHHHHHhhcCCCEEEEEECCc
Confidence 1111 111111 2246899999877655556677777655556678877764
No 188
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=98.13 E-value=4.8e-05 Score=80.77 Aligned_cols=188 Identities=15% Similarity=0.086 Sum_probs=105.7
Q ss_pred CCceecchhhHHHHHHHHhccC------cccCCCeEEEEEEccCCChHHHHHHHHhhhhhhhcccCeEEEEEeCCCCCHH
Q 002308 149 EEEICGRVGERNALLSMLLCES------SEQQKGLHIISIVGMGGIGKTTLAQLACNHVEVKREFDKTLWVCVSETFDEF 222 (938)
Q Consensus 149 ~~~~vGr~~~~~~l~~~l~~~~------~~~~~~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~ 222 (938)
-..++|.+..++.+.+.+..+. .......+-+.|+|++|+|||++|+.+++. ....| +.++++
T Consensus 17 ~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~--~~~~~---~~v~~~------ 85 (322)
T 3eie_A 17 WEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATE--ANSTF---FSVSSS------ 85 (322)
T ss_dssp GGGSCSCHHHHHHHHHHTHHHHHCGGGCCTTCCCCCEEEEECSSSSCHHHHHHHHHHH--HTCEE---EEEEHH------
T ss_pred HHHhcChHHHHHHHHHHHHHHHhCHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHH--HCCCE---EEEchH------
Confidence 3578999999999988773110 001223467899999999999999999883 33222 233321
Q ss_pred HHHHHHHHHhcCCCCCCCcHHHHHHH-HHHHhcCceEEEEEecCCCCCc-----------cChhHHHHhhh---CCCCCc
Q 002308 223 RIAKAMLEALTGSTSNLNALQSLLIS-IDESIAGKRFLLVLDDVWDGDY-----------IKWEPFYRCLK---KGLHGS 287 (938)
Q Consensus 223 ~~~~~i~~~l~~~~~~~~~~~~~~~~-l~~~l~~~~~LlVlDdv~~~~~-----------~~~~~l~~~l~---~~~~gs 287 (938)
. +.... ....+..... +...-..++.+|+||+++.... .....+...+. ....+.
T Consensus 86 ~----l~~~~------~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~v 155 (322)
T 3eie_A 86 D----LVSKW------MGESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGNDSQGV 155 (322)
T ss_dssp H----HHTTT------GGGHHHHHHHHHHHHHHTSSEEEEEECGGGGSCC------CCTHHHHHHHHHHHGGGGTSCCCE
T ss_pred H----Hhhcc------cchHHHHHHHHHHHHHhcCCeEEEechhhhhhccCCCCcchHHHHHHHHHHHHhccccccCCce
Confidence 1 11110 0111222222 2222335678999999964311 01233333333 223455
Q ss_pred EEEEEcCChhhhh-hh--cCCceEeCCCCChHHHHHHHHHhhcCCCCCchhhHHHHHHHHHHHhcCC-ChhHHHHHHh
Q 002308 288 KILITTRKESIVS-MM--RSTDIISIEELAEEECWVLFKRLAFFGRSTEECEKLEQIGQRIARKCKG-LPLAAKTMGS 361 (938)
Q Consensus 288 ~ilvTtr~~~v~~-~~--~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g-~Plai~~~~~ 361 (938)
.||.||..+.... .+ .-...+.+...+.++..+++..++.......... ....|++.+.| .+-.+..++.
T Consensus 156 ~vi~atn~~~~ld~al~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~----~l~~la~~t~g~sg~di~~l~~ 229 (322)
T 3eie_A 156 LVLGATNIPWQLDSAIRRRFERRIYIPLPDLAARTTMFEINVGDTPCVLTKE----DYRTLGAMTEGYSGSDIAVVVK 229 (322)
T ss_dssp EEEEEESCGGGSCHHHHHHCCEEEECCCCCHHHHHHHHHHHHTTCCCCCCHH----HHHHHHHTTTTCCHHHHHHHHH
T ss_pred EEEEecCChhhCCHHHHcccCeEEEeCCCCHHHHHHHHHHHhccCCCCCCHH----HHHHHHHHcCCCCHHHHHHHHH
Confidence 5666776543211 11 1234678889999999999998875433221222 35678888876 5656665554
No 189
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=98.12 E-value=6.3e-06 Score=79.89 Aligned_cols=46 Identities=20% Similarity=0.229 Sum_probs=38.8
Q ss_pred CCceecchhhHHHHHHHHhccCcccCCCeEEEEEEccCCChHHHHHHHHhhh
Q 002308 149 EEEICGRVGERNALLSMLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNH 200 (938)
Q Consensus 149 ~~~~vGr~~~~~~l~~~l~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~v~~~ 200 (938)
...++||+.+++.+.+.+... ..+.+.|+|++|+|||++|+.+++.
T Consensus 21 ~~~~~g~~~~~~~l~~~l~~~------~~~~vll~G~~G~GKT~la~~~~~~ 66 (187)
T 2p65_A 21 LDPVIGRDTEIRRAIQILSRR------TKNNPILLGDPGVGKTAIVEGLAIK 66 (187)
T ss_dssp SCCCCSCHHHHHHHHHHHTSS------SSCEEEEESCGGGCHHHHHHHHHHH
T ss_pred cchhhcchHHHHHHHHHHhCC------CCCceEEECCCCCCHHHHHHHHHHH
Confidence 356999999999999998742 3456789999999999999999884
No 190
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=98.10 E-value=1e-05 Score=88.93 Aligned_cols=108 Identities=14% Similarity=0.105 Sum_probs=58.9
Q ss_pred cccccC-ceeEEeccCCCCCCCCchhhHHHHHhccCCCeeEEecCCCC--CCccc-CccccccCCCCeeeecCCcccccc
Q 002308 533 STCRAK-RIRSLLIEWPEFGHSSLNGEILEELFRESTSLRALDFPSFY--LPLEI-PRNIEKLVHLRYLNLSDQKIKKLP 608 (938)
Q Consensus 533 ~~~~~~-~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~n~--~~~~l-p~~~~~l~~L~~L~L~~~~i~~lp 608 (938)
+|.++. .|+++.+..+- ..+...+|.+|++|+.+.+..+. -...+ ...|..+.+|+.+.+..+ ++.++
T Consensus 58 aF~~~~~~L~sI~iP~sv-------t~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~~I~ 129 (394)
T 4gt6_A 58 VFCNYKYVLTSVQIPDTV-------TEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VTEID 129 (394)
T ss_dssp TTTTCCSCCCEEEECTTC-------CEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CSEEC
T ss_pred hccCCCCcCEEEEECCCe-------eEEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-cceeh
Confidence 444453 46666664321 22334457777777777776552 01122 234666677777666543 44444
Q ss_pred c-cccCCCCccEEEcCCCCCcccccccccccCccceeecCCC
Q 002308 609 E-TLCELYNLEKLDISGCSDLRELPKGIGKLINMKHLLNSGT 649 (938)
Q Consensus 609 ~-~i~~l~~L~~L~l~~~~~l~~lp~~i~~l~~L~~L~l~~~ 649 (938)
. .+..+.+|+.+.+..+. ...-...+..+.+|+.+.+..+
T Consensus 130 ~~aF~~c~~L~~i~lp~~~-~~I~~~~F~~c~~L~~i~~~~~ 170 (394)
T 4gt6_A 130 SEAFHHCEELDTVTIPEGV-TSVADGMFSYCYSLHTVTLPDS 170 (394)
T ss_dssp TTTTTTCTTCCEEECCTTC-CEECTTTTTTCTTCCEEECCTT
T ss_pred hhhhhhhccccccccccee-eeecccceecccccccccccce
Confidence 3 45667777777776532 2222334556667777766543
No 191
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=98.09 E-value=0.00013 Score=77.07 Aligned_cols=191 Identities=15% Similarity=0.088 Sum_probs=103.7
Q ss_pred CCceecchhhHHHHHHHHhcc----Cc--ccCCCeEEEEEEccCCChHHHHHHHHhhhhhhhcccCeEEEEEeCCCCCHH
Q 002308 149 EEEICGRVGERNALLSMLLCE----SS--EQQKGLHIISIVGMGGIGKTTLAQLACNHVEVKREFDKTLWVCVSETFDEF 222 (938)
Q Consensus 149 ~~~~vGr~~~~~~l~~~l~~~----~~--~~~~~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~ 222 (938)
-+.++|.+...+.+.+.+..+ .- ......+-|.|+|++|+|||+||+.+++... .. ..+.+..+.-.
T Consensus 11 ~~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~~-~~---~~~~i~~~~l~--- 83 (322)
T 1xwi_A 11 WSDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEAN-NS---TFFSISSSDLV--- 83 (322)
T ss_dssp GGGSCSCHHHHHHHHHHHHHHHHCGGGSCTTCCCCSEEEEESSSSSCHHHHHHHHHHHTT-SC---EEEEEECCSSC---
T ss_pred HHHhcCHHHHHHHHHHHHHHHHhCHHHHhCCCCCCceEEEECCCCccHHHHHHHHHHHcC-CC---cEEEEEhHHHH---
Confidence 356899998888888766321 00 0012346789999999999999999998420 11 22333333211
Q ss_pred HHHHHHHHHhcCCCCCCCcHHHHHHHHHHHhcCceEEEEEecCCCCCc------cC-----hhHHHHhhhC---CCCCcE
Q 002308 223 RIAKAMLEALTGSTSNLNALQSLLISIDESIAGKRFLLVLDDVWDGDY------IK-----WEPFYRCLKK---GLHGSK 288 (938)
Q Consensus 223 ~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~~------~~-----~~~l~~~l~~---~~~gs~ 288 (938)
..... .........+...-..++.+|+||+++.... .. ...+...+.. ...+..
T Consensus 84 -----------~~~~g-~~~~~~~~lf~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~~v~ 151 (322)
T 1xwi_A 84 -----------SKWLG-ESEKLVKNLFQLARENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVDNDGIL 151 (322)
T ss_dssp -----------CSSCC-SCHHHHHHHHHHHHHTSSEEEEEETTTGGGCCSSSCCTTHHHHHHHHHHHHHHCSSSCCTTEE
T ss_pred -----------hhhhh-HHHHHHHHHHHHHHhcCCcEEEeecHHHhccccccccchHHHHHHHHHHHHHhcccccCCCEE
Confidence 00000 1111122222222345778999999964310 00 1122223322 123445
Q ss_pred EEEEcCChhhh-hhh--cCCceEeCCCCChHHHHHHHHHhhcCCCCCchhhHHHHHHHHHHHhcCCC-hhHHHHHHhh
Q 002308 289 ILITTRKESIV-SMM--RSTDIISIEELAEEECWVLFKRLAFFGRSTEECEKLEQIGQRIARKCKGL-PLAAKTMGSL 362 (938)
Q Consensus 289 ilvTtr~~~v~-~~~--~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~-Plai~~~~~~ 362 (938)
||.||..+... ... .-...+.+...+.++..+++..++........ ......|++.+.|. +-.+..++..
T Consensus 152 vI~atn~~~~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~~~l~----~~~l~~la~~t~G~sgadl~~l~~~ 225 (322)
T 1xwi_A 152 VLGATNIPWVLDSAIRRRFEKRIYIPLPEPHARAAMFKLHLGTTQNSLT----EADFRELGRKTDGYSGADISIIVRD 225 (322)
T ss_dssp EEEEESCTTTSCHHHHHTCCEEEECCCCCHHHHHHHHHHHHTTCCBCCC----HHHHHHHHHTCTTCCHHHHHHHHHH
T ss_pred EEEecCCcccCCHHHHhhcCeEEEeCCcCHHHHHHHHHHHHhcCCCCCC----HHHHHHHHHHcCCCCHHHHHHHHHH
Confidence 55566544211 111 22357888989999999999887643221111 12356788888876 5556666543
No 192
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.09 E-value=1.8e-06 Score=83.49 Aligned_cols=116 Identities=12% Similarity=0.034 Sum_probs=68.9
Q ss_pred cccccCceeEEeccCC-CCCCCCchhhHHHHHhccCCCeeEEecCCCCCCcc----cCccccccCCCCeeeecCCcccc-
Q 002308 533 STCRAKRIRSLLIEWP-EFGHSSLNGEILEELFRESTSLRALDFPSFYLPLE----IPRNIEKLVHLRYLNLSDQKIKK- 606 (938)
Q Consensus 533 ~~~~~~~Lr~L~l~~~-~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~n~~~~~----lp~~~~~l~~L~~L~L~~~~i~~- 606 (938)
.+...+.|++|++++| .++... ...+...+...+.|++|+|++|.+... +...+...++|++|+|++|.|+.
T Consensus 31 ~l~~~~~L~~L~L~~n~~i~~~g--~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~ 108 (185)
T 1io0_A 31 IQNNDPDLEEVNLNNIMNIPVPT--LKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGS 108 (185)
T ss_dssp HHTTCTTCCEEECTTCTTCCHHH--HHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHH
T ss_pred HHhcCCCCCEEEecCCCCCCHHH--HHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHH
Confidence 3445677777777776 553221 112334456677777777777774322 33444455677777777777662
Q ss_pred ----ccccccCCCCccEEEc--CCCCCccc----ccccccccCccceeecCCCc
Q 002308 607 ----LPETLCELYNLEKLDI--SGCSDLRE----LPKGIGKLINMKHLLNSGTR 650 (938)
Q Consensus 607 ----lp~~i~~l~~L~~L~l--~~~~~l~~----lp~~i~~l~~L~~L~l~~~~ 650 (938)
+...+...+.|++|++ ++|.+... +...+...++|++|++++|.
T Consensus 109 g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~ 162 (185)
T 1io0_A 109 GILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQ 162 (185)
T ss_dssp HHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSS
T ss_pred HHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCC
Confidence 4556666777777777 66663221 33444555667777777663
No 193
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=98.09 E-value=4.4e-05 Score=82.03 Aligned_cols=189 Identities=15% Similarity=0.068 Sum_probs=103.0
Q ss_pred CCceecchhhHHHHHHHHhcc----Cc--ccCCCeEEEEEEccCCChHHHHHHHHhhhhhhhcccCeEEEEEeCCCCCHH
Q 002308 149 EEEICGRVGERNALLSMLLCE----SS--EQQKGLHIISIVGMGGIGKTTLAQLACNHVEVKREFDKTLWVCVSETFDEF 222 (938)
Q Consensus 149 ~~~~vGr~~~~~~l~~~l~~~----~~--~~~~~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~ 222 (938)
-..++|.+..++.+.+.+..+ .. ......+-|.|+|++|+|||+||+.+++. ....| +.+.++
T Consensus 50 ~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~--~~~~~---~~v~~~------ 118 (355)
T 2qp9_X 50 WEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATE--ANSTF---FSVSSS------ 118 (355)
T ss_dssp GGGSCCGGGHHHHHHHHTHHHHHCGGGGCSSCCCCCCEEEECSTTSCHHHHHHHHHHH--HTCEE---EEEEHH------
T ss_pred HHHhCCHHHHHHHHHHHHHHHHhCHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHH--hCCCE---EEeeHH------
Confidence 356899999999988876321 00 00123456889999999999999999984 33222 223221
Q ss_pred HHHHHHHHHhcCCCCCCCcHHHHHHHHHHHhcCceEEEEEecCCCCCcc-----------ChhHHHHhhhC---CCCCcE
Q 002308 223 RIAKAMLEALTGSTSNLNALQSLLISIDESIAGKRFLLVLDDVWDGDYI-----------KWEPFYRCLKK---GLHGSK 288 (938)
Q Consensus 223 ~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~~~-----------~~~~l~~~l~~---~~~gs~ 288 (938)
++ ..... . .........+...-..++.+|+||+++..... ....+...+.. ...+..
T Consensus 119 ~l----~~~~~----g-~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~ 189 (355)
T 2qp9_X 119 DL----VSKWM----G-ESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGNDSQGVL 189 (355)
T ss_dssp HH----HSCC--------CHHHHHHHHHHHHHTSSEEEEEECGGGGTC------CTHHHHHHHHHHHHHHHCC---CCEE
T ss_pred HH----hhhhc----c-hHHHHHHHHHHHHHHcCCeEEEEechHhhcccCCCCcchHHHHHHHHHHHHhhcccccCCCeE
Confidence 11 11110 0 01111222222223457889999999653211 02223333332 134555
Q ss_pred EEEEcCChhhhh-hh--cCCceEeCCCCChHHHHHHHHHhhcCCCCCchhhHHHHHHHHHHHhcCC-ChhHHHHHHh
Q 002308 289 ILITTRKESIVS-MM--RSTDIISIEELAEEECWVLFKRLAFFGRSTEECEKLEQIGQRIARKCKG-LPLAAKTMGS 361 (938)
Q Consensus 289 ilvTtr~~~v~~-~~--~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g-~Plai~~~~~ 361 (938)
||.||..+.... .+ .-...+.+...+.++..+++..++........ ......|++.+.| .+-.|..++.
T Consensus 190 vI~atn~~~~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~~~~~----~~~l~~la~~t~G~sg~dl~~l~~ 262 (355)
T 2qp9_X 190 VLGATNIPWQLDSAIRRRFERRIYIPLPDLAARTTMFEINVGDTPSVLT----KEDYRTLGAMTEGYSGSDIAVVVK 262 (355)
T ss_dssp EEEEESCGGGSCHHHHHTCCEEEECCCCCHHHHHHHHHHHHTTSCBCCC----HHHHHHHHHHTTTCCHHHHHHHHH
T ss_pred EEeecCCcccCCHHHHcccCEEEEeCCcCHHHHHHHHHHHHhhCCCCCC----HHHHHHHHHHcCCCCHHHHHHHHH
Confidence 666666542111 11 22357788999999999999887643321111 1235678888887 5655665554
No 194
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=98.08 E-value=5.8e-05 Score=81.29 Aligned_cols=187 Identities=11% Similarity=0.038 Sum_probs=103.4
Q ss_pred CceecchhhHHHHHHHHhccC---c---ccCCCeEEEEEEccCCChHHHHHHHHhhhhhhhcccCeEEEEEeCCCCCHHH
Q 002308 150 EEICGRVGERNALLSMLLCES---S---EQQKGLHIISIVGMGGIGKTTLAQLACNHVEVKREFDKTLWVCVSETFDEFR 223 (938)
Q Consensus 150 ~~~vGr~~~~~~l~~~l~~~~---~---~~~~~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~ 223 (938)
..++|.+..++.+.+.+...- . ......+.|.|+|++|+|||++|+.+++. ... ..+.++++.-..
T Consensus 84 ~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~--~~~---~~~~i~~~~l~~--- 155 (357)
T 3d8b_A 84 EDIAGVEFAKATIKEIVVWPMLRPDIFTGLRGPPKGILLFGPPGTGKTLIGKCIASQ--SGA---TFFSISASSLTS--- 155 (357)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGSCCSEEEEESSTTSSHHHHHHHHHHH--TTC---EEEEEEGGGGCC---
T ss_pred HHhCChHHHHHHHHHHHHHHhhChHhHhhccCCCceEEEECCCCCCHHHHHHHHHHH--cCC---eEEEEehHHhhc---
Confidence 568999999999988775310 0 00124567899999999999999999873 322 233444432111
Q ss_pred HHHHHHHHhcCCCCCCCcHHHHHHH-HHHHhcCceEEEEEecCCCCC-----------ccChhHHHHhhhCC----CCCc
Q 002308 224 IAKAMLEALTGSTSNLNALQSLLIS-IDESIAGKRFLLVLDDVWDGD-----------YIKWEPFYRCLKKG----LHGS 287 (938)
Q Consensus 224 ~~~~i~~~l~~~~~~~~~~~~~~~~-l~~~l~~~~~LlVlDdv~~~~-----------~~~~~~l~~~l~~~----~~gs 287 (938)
.. .......... +...-..++.+|+||+++... ......+...+... ..+.
T Consensus 156 -----------~~--~g~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~~~v 222 (357)
T 3d8b_A 156 -----------KW--VGEGEKMVRALFAVARCQQPAVIFIDEIDSLLSQRGDGEHESSRRIKTEFLVQLDGATTSSEDRI 222 (357)
T ss_dssp -----------SS--TTHHHHHHHHHHHHHHHTCSEEEEEETHHHHTBC------CHHHHHHHHHHHHHHC----CCCCE
T ss_pred -----------cc--cchHHHHHHHHHHHHHhcCCeEEEEeCchhhhccCCCCcchHHHHHHHHHHHHHhcccccCCCCE
Confidence 00 0111111122 222223567899999984321 01122333334321 2344
Q ss_pred EEEEEcCChh-hhhhh--cCCceEeCCCCChHHHHHHHHHhhcCCCCCchhhHHHHHHHHHHHhcCC-ChhHHHHHHh
Q 002308 288 KILITTRKES-IVSMM--RSTDIISIEELAEEECWVLFKRLAFFGRSTEECEKLEQIGQRIARKCKG-LPLAAKTMGS 361 (938)
Q Consensus 288 ~ilvTtr~~~-v~~~~--~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g-~Plai~~~~~ 361 (938)
.||.||.... +.... .-...+.+...+.++..+++...+........ .+....|++.+.| .+-.+..++.
T Consensus 223 ~vI~atn~~~~l~~~l~~Rf~~~i~i~~p~~~~r~~il~~~~~~~~~~l~----~~~l~~la~~t~G~s~~dl~~l~~ 296 (357)
T 3d8b_A 223 LVVGATNRPQEIDEAARRRLVKRLYIPLPEASARKQIVINLMSKEQCCLS----EEEIEQIVQQSDAFSGADMTQLCR 296 (357)
T ss_dssp EEEEEESCGGGBCHHHHTTCCEEEECCCCCHHHHHHHHHHHHHTSCBCCC----HHHHHHHHHHTTTCCHHHHHHHHH
T ss_pred EEEEecCChhhCCHHHHhhCceEEEeCCcCHHHHHHHHHHHHhhcCCCcc----HHHHHHHHHHcCCCCHHHHHHHHH
Confidence 5555665432 21111 11246788889999999998887643221111 2336678888887 5666666654
No 195
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=98.07 E-value=4.4e-05 Score=79.00 Aligned_cols=171 Identities=19% Similarity=0.195 Sum_probs=89.9
Q ss_pred CceecchhhHHHHHH-------HHhccCcccCCCeEEEEEEccCCChHHHHHHHHhhhhhhhcccCeEEEEEeCCCCCHH
Q 002308 150 EEICGRVGERNALLS-------MLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNHVEVKREFDKTLWVCVSETFDEF 222 (938)
Q Consensus 150 ~~~vGr~~~~~~l~~-------~l~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~ 222 (938)
..++|....++++.. .+.... ....+.+.|+|++|+|||++|+.+++. ....| +.+..+.
T Consensus 33 ~~~i~~~~~~~~i~~~~~~l~~~l~~~~---~~~~~~vLl~G~~GtGKT~la~~ia~~--~~~~~---~~i~~~~----- 99 (272)
T 1d2n_A 33 NGIIKWGDPVTRVLDDGELLVQQTKNSD---RTPLVSVLLEGPPHSGKTALAAKIAEE--SNFPF---IKICSPD----- 99 (272)
T ss_dssp TCCCCCSHHHHHHHHHHHHHHHHHHHCS---SCSEEEEEEECSTTSSHHHHHHHHHHH--HTCSE---EEEECGG-----
T ss_pred cCCCCccHHHHHHHHHHHHHHHHHhccC---CCCCeEEEEECCCCCcHHHHHHHHHHH--hCCCE---EEEeCHH-----
Confidence 357787777666655 232111 335678999999999999999999884 22221 2233221
Q ss_pred HHHHHHHHHhcCCCCCCCcHHHHHHHHHHHhcCceEEEEEecCCCC------Cc---cCh-hHHHHhhhC---CCCCcEE
Q 002308 223 RIAKAMLEALTGSTSNLNALQSLLISIDESIAGKRFLLVLDDVWDG------DY---IKW-EPFYRCLKK---GLHGSKI 289 (938)
Q Consensus 223 ~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~------~~---~~~-~~l~~~l~~---~~~gs~i 289 (938)
.+.+. ............+......+..+|+||+++.. .. ..+ ..+...+.. ......|
T Consensus 100 --------~~~g~-~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~i 170 (272)
T 1d2n_A 100 --------KMIGF-SETAKCQAMKKIFDDAYKSQLSCVVVDDIERLLDYVPIGPRFSNLVLQALLVLLKKAPPQGRKLLI 170 (272)
T ss_dssp --------GCTTC-CHHHHHHHHHHHHHHHHTSSEEEEEECCHHHHTTCBTTTTBCCHHHHHHHHHHTTCCCSTTCEEEE
T ss_pred --------HhcCC-chHHHHHHHHHHHHHHHhcCCcEEEEEChhhhhccCCCChhHHHHHHHHHHHHhcCccCCCCCEEE
Confidence 01100 00000111222333334467889999998542 11 111 223333322 1223346
Q ss_pred EEEcCChhhhhh---hcC-CceEeCCCCCh-HHHHHHHHHhhcCCCCCchhhHHHHHHHHHHHhcCC
Q 002308 290 LITTRKESIVSM---MRS-TDIISIEELAE-EECWVLFKRLAFFGRSTEECEKLEQIGQRIARKCKG 351 (938)
Q Consensus 290 lvTtr~~~v~~~---~~~-~~~~~l~~L~~-~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g 351 (938)
|.||........ .+. ...+.+.+++. ++..+++.... . .. .+....+++.+.|
T Consensus 171 i~ttn~~~~l~~~~l~~rf~~~i~~p~l~~r~~i~~i~~~~~---~--~~----~~~~~~l~~~~~g 228 (272)
T 1d2n_A 171 IGTTSRKDVLQEMEMLNAFSTTIHVPNIATGEQLLEALELLG---N--FK----DKERTTIAQQVKG 228 (272)
T ss_dssp EEEESCHHHHHHTTCTTTSSEEEECCCEEEHHHHHHHHHHHT---C--SC----HHHHHHHHHHHTT
T ss_pred EEecCChhhcchhhhhcccceEEcCCCccHHHHHHHHHHhcC---C--CC----HHHHHHHHHHhcC
Confidence 667776644332 111 45788999988 66666665531 1 11 2235677777777
No 196
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=98.04 E-value=0.00013 Score=76.54 Aligned_cols=188 Identities=16% Similarity=0.094 Sum_probs=101.6
Q ss_pred CCceecchhhHHHHHHHHhccCc------ccCCCeEEEEEEccCCChHHHHHHHHhhhhhhhcccCeEEEEEeCCCCCHH
Q 002308 149 EEEICGRVGERNALLSMLLCESS------EQQKGLHIISIVGMGGIGKTTLAQLACNHVEVKREFDKTLWVCVSETFDEF 222 (938)
Q Consensus 149 ~~~~vGr~~~~~~l~~~l~~~~~------~~~~~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~ 222 (938)
-..++|.+..++.+.+.+..+.. ......+.+.|+|++|+|||++|+.++.. .... .+.++++.-..
T Consensus 20 ~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~la~~--~~~~---~~~i~~~~l~~-- 92 (297)
T 3b9p_A 20 WTDIAGQDVAKQALQEMVILPSVRPELFTGLRAPAKGLLLFGPPGNGKTLLARAVATE--CSAT---FLNISAASLTS-- 92 (297)
T ss_dssp GGGSCCCHHHHHHHHHHTHHHHHCGGGSCGGGCCCSEEEEESSSSSCHHHHHHHHHHH--TTCE---EEEEESTTTSS--
T ss_pred HHHhCChHHHHHHHHHHHHhhhhCHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHH--hCCC---eEEeeHHHHhh--
Confidence 35699999999999887743210 00123467899999999999999999883 3222 23344432110
Q ss_pred HHHHHHHHHhcCCCCCCCcHHHHHH-HHHHHhcCceEEEEEecCCCCCcc-----------ChhHHHHhhhCC-----CC
Q 002308 223 RIAKAMLEALTGSTSNLNALQSLLI-SIDESIAGKRFLLVLDDVWDGDYI-----------KWEPFYRCLKKG-----LH 285 (938)
Q Consensus 223 ~~~~~i~~~l~~~~~~~~~~~~~~~-~l~~~l~~~~~LlVlDdv~~~~~~-----------~~~~l~~~l~~~-----~~ 285 (938)
.. ......... .+......++.+|++|++...... ....+...+... ..
T Consensus 93 ------------~~--~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~ 158 (297)
T 3b9p_A 93 ------------KY--VGDGEKLVRALFAVARHMQPSIIFIDEVDSLLSERSSSEHEASRRLKTEFLVEFDGLPGNPDGD 158 (297)
T ss_dssp ------------SS--CSCHHHHHHHHHHHHHHTCSEEEEEETGGGTSBCC-----CCSHHHHHHHHHHHHHCC------
T ss_pred ------------cc--cchHHHHHHHHHHHHHHcCCcEEEeccHHHhccccccCcchHHHHHHHHHHHHHhcccccCCCC
Confidence 00 011122222 222233456789999999543110 011222222221 12
Q ss_pred CcEEEEEcCChhhh-hhh--cCCceEeCCCCChHHHHHHHHHhhcCCCCCchhhHHHHHHHHHHHhcCCChh-HHHHHHh
Q 002308 286 GSKILITTRKESIV-SMM--RSTDIISIEELAEEECWVLFKRLAFFGRSTEECEKLEQIGQRIARKCKGLPL-AAKTMGS 361 (938)
Q Consensus 286 gs~ilvTtr~~~v~-~~~--~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl-ai~~~~~ 361 (938)
+..||.||..+... ... .-...+.+...+.++..+++...+........ .+....+++.+.|.+- ++..++.
T Consensus 159 ~v~vi~~tn~~~~l~~~l~~R~~~~i~~~~p~~~~r~~il~~~~~~~~~~~~----~~~~~~la~~~~g~~~~~l~~l~~ 234 (297)
T 3b9p_A 159 RIVVLAATNRPQELDEAALRRFTKRVYVSLPDEQTRELLLNRLLQKQGSPLD----TEALRRLAKITDGYSGSDLTALAK 234 (297)
T ss_dssp CEEEEEEESCGGGBCHHHHHHCCEEEECCCCCHHHHHHHHHHHHGGGSCCSC----HHHHHHHHHHTTTCCHHHHHHHHH
T ss_pred cEEEEeecCChhhCCHHHHhhCCeEEEeCCcCHHHHHHHHHHHHHhcCCCCC----HHHHHHHHHHcCCCCHHHHHHHHH
Confidence 34566677654311 111 12346778888888888888876543221111 2235678888888775 5545443
No 197
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.00 E-value=3.1e-06 Score=85.83 Aligned_cols=81 Identities=21% Similarity=0.208 Sum_probs=56.9
Q ss_pred hccCCCeeEEecCCCCCCc--ccCccccccCCCCeeeecCCccccccccccCCC--CccEEEcCCCCCcccccc------
Q 002308 564 FRESTSLRALDFPSFYLPL--EIPRNIEKLVHLRYLNLSDQKIKKLPETLCELY--NLEKLDISGCSDLRELPK------ 633 (938)
Q Consensus 564 ~~~~~~Lr~L~L~~n~~~~--~lp~~~~~l~~L~~L~L~~~~i~~lp~~i~~l~--~L~~L~l~~~~~l~~lp~------ 633 (938)
...++.|+.|+|++|.+.+ .+|..++.+++|++|+|++|.|..+ ..+..+. +|++|+|++|.....+|.
T Consensus 166 ~~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~-~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~ 244 (267)
T 3rw6_A 166 EENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE-RELDKIKGLKLEELWLDGNSLCDTFRDQSTYIS 244 (267)
T ss_dssp HHHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG-GGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHH
T ss_pred HhhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc-hhhhhcccCCcceEEccCCcCccccCcchhHHH
Confidence 4678889999999998654 4556677888888888888888866 3344444 788888888875544442
Q ss_pred -cccccCccceee
Q 002308 634 -GIGKLINMKHLL 645 (938)
Q Consensus 634 -~i~~l~~L~~L~ 645 (938)
.+..+++|+.|+
T Consensus 245 ~il~~~P~L~~LD 257 (267)
T 3rw6_A 245 AIRERFPKLLRLD 257 (267)
T ss_dssp HHHHHCTTCCEES
T ss_pred HHHHHCcccCeEC
Confidence 245666676665
No 198
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=97.99 E-value=1.6e-06 Score=83.76 Aligned_cols=118 Identities=12% Similarity=0.140 Sum_probs=84.1
Q ss_pred hHHHHHhccCCCeeEEecCCC-CCCcc----cCccccccCCCCeeeecCCccc-----cccccccCCCCccEEEcCCCCC
Q 002308 558 EILEELFRESTSLRALDFPSF-YLPLE----IPRNIEKLVHLRYLNLSDQKIK-----KLPETLCELYNLEKLDISGCSD 627 (938)
Q Consensus 558 ~~~~~~~~~~~~Lr~L~L~~n-~~~~~----lp~~~~~l~~L~~L~L~~~~i~-----~lp~~i~~l~~L~~L~l~~~~~ 627 (938)
......+...+.|+.|+|++| .+... +...+...++|++|+|++|.|. .+...+...++|++|+|++|.+
T Consensus 26 ~~l~~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i 105 (185)
T 1io0_A 26 ETLKRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFI 105 (185)
T ss_dssp HHHHHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCC
T ss_pred HHHHHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcC
Confidence 345667889999999999999 74322 4455667789999999999987 3556677788999999999984
Q ss_pred cc----cccccccccCccceeec--CCCccccc----CCccCCCCCCCcccCeeEecC
Q 002308 628 LR----ELPKGIGKLINMKHLLN--SGTRSLRY----MPVGIGRLTGLRTLGEFHVSA 675 (938)
Q Consensus 628 l~----~lp~~i~~l~~L~~L~l--~~~~~~~~----~p~~l~~l~~L~~L~l~~~~~ 675 (938)
.. .+...+...++|++|++ ++|.+... +...+...++|+.|++..|.+
T Consensus 106 ~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i 163 (185)
T 1io0_A 106 SGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQ 163 (185)
T ss_dssp CHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSH
T ss_pred CHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCC
Confidence 33 25666777888999999 66754432 222334445666666655543
No 199
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=97.98 E-value=1.6e-05 Score=76.49 Aligned_cols=122 Identities=16% Similarity=0.163 Sum_probs=66.4
Q ss_pred chhhHHHHHHHHhccCcccCCCeEEEEEEccCCChHHHHHHHHhhhhhhhcccCeEEEEEeCCCCCHHHHHHHHHHHhcC
Q 002308 155 RVGERNALLSMLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNHVEVKREFDKTLWVCVSETFDEFRIAKAMLEALTG 234 (938)
Q Consensus 155 r~~~~~~l~~~l~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~ 234 (938)
+...++.+.+++..-. ......++|+|++|+||||||+.++........+ .+++++ ..++...+......
T Consensus 19 ~~~~~~~~~~~~~~~~---~~~g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~-~~~~~~------~~~~~~~~~~~~~~ 88 (180)
T 3ec2_A 19 QNRALLTIRVFVHNFN---PEEGKGLTFVGSPGVGKTHLAVATLKAIYEKKGI-RGYFFD------TKDLIFRLKHLMDE 88 (180)
T ss_dssp HHHHHHHHHHHHHSCC---GGGCCEEEECCSSSSSHHHHHHHHHHHHHHHSCC-CCCEEE------HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcc---ccCCCEEEEECCCCCCHHHHHHHHHHHHHHHcCC-eEEEEE------HHHHHHHHHHHhcC
Confidence 3444555555554322 1235689999999999999999999853322222 233443 34455555444332
Q ss_pred CCCCCCcHHHHHHHHHHHhcCceEEEEEecCCCCCccChh--HHHHhhhCC-CCCcEEEEEcCCh
Q 002308 235 STSNLNALQSLLISIDESIAGKRFLLVLDDVWDGDYIKWE--PFYRCLKKG-LHGSKILITTRKE 296 (938)
Q Consensus 235 ~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~~~~~~--~l~~~l~~~-~~gs~ilvTtr~~ 296 (938)
.... .... .+. +.-+|||||++......|. .+...+... ..|..||+||...
T Consensus 89 ~~~~-----~~~~----~~~-~~~llilDE~~~~~~~~~~~~~l~~ll~~~~~~~~~ii~tsn~~ 143 (180)
T 3ec2_A 89 GKDT-----KFLK----TVL-NSPVLVLDDLGSERLSDWQRELISYIITYRYNNLKSTIITTNYS 143 (180)
T ss_dssp TCCS-----HHHH----HHH-TCSEEEEETCSSSCCCHHHHHHHHHHHHHHHHTTCEEEEECCCC
T ss_pred chHH-----HHHH----Hhc-CCCEEEEeCCCCCcCCHHHHHHHHHHHHHHHHcCCCEEEEcCCC
Confidence 1111 1111 122 4458999999743323333 333434332 2567788888743
No 200
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=97.96 E-value=3.3e-05 Score=84.86 Aligned_cols=320 Identities=9% Similarity=0.066 Sum_probs=166.3
Q ss_pred cceEEEEccCCCc-CcccccccCceeEEeccCCCCCCCCchhhHHHHHhccCCCeeEEecCCCCCCcccCccccccCCCC
Q 002308 517 VRHLMLIMGKEST-FPISTCRAKRIRSLLIEWPEFGHSSLNGEILEELFRESTSLRALDFPSFYLPLEIPRNIEKLVHLR 595 (938)
Q Consensus 517 ~r~l~l~~~~~~~-~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~n~~~~~lp~~~~~l~~L~ 595 (938)
++.+.+..+ ++. -..+|.+|.+|+++.+..+.-. . ...+...+|..+..|+.+.+..+- ...-...|..+.+|+
T Consensus 66 L~sI~iP~s-vt~Ig~~AF~~C~~L~~i~~~~n~p~--~-l~~Ig~~aF~~c~~L~~i~~~~~~-~~I~~~aF~~c~~L~ 140 (394)
T 4gt6_A 66 LTSVQIPDT-VTEIGSNAFYNCTSLKRVTIQDNKPS--C-VKKIGRQAFMFCSELTDIPILDSV-TEIDSEAFHHCEELD 140 (394)
T ss_dssp CCEEEECTT-CCEECTTTTTTCTTCCEEEEGGGCCC--C-CCEECTTTTTTCTTCCBCGGGTTC-SEECTTTTTTCTTCC
T ss_pred CEEEEECCC-eeEEhHHHhhCCccCceEeecCCCCC--e-eeEechhhchhcccceeeccCCcc-ceehhhhhhhhcccc
Confidence 566666433 333 3567889999999988765311 1 123344568889999988887663 333345678889999
Q ss_pred eeeecCCcccccc-ccccCCCCccEEEcCCCCCcccccccccccCccceeecCCCcccccCCccCCCCCCCcccCeeEec
Q 002308 596 YLNLSDQKIKKLP-ETLCELYNLEKLDISGCSDLRELPKGIGKLINMKHLLNSGTRSLRYMPVGIGRLTGLRTLGEFHVS 674 (938)
Q Consensus 596 ~L~L~~~~i~~lp-~~i~~l~~L~~L~l~~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~ 674 (938)
.+.+..+ +..++ ..+..+.+|+.+.+..+ +..+........+|+.+.+..+ ....-...+..+.+|.........
T Consensus 141 ~i~lp~~-~~~I~~~~F~~c~~L~~i~~~~~--~~~I~~~aF~~~~l~~i~ip~~-~~~i~~~af~~c~~l~~~~~~~~~ 216 (394)
T 4gt6_A 141 TVTIPEG-VTSVADGMFSYCYSLHTVTLPDS--VTAIEERAFTGTALTQIHIPAK-VTRIGTNAFSECFALSTITSDSES 216 (394)
T ss_dssp EEECCTT-CCEECTTTTTTCTTCCEEECCTT--CCEECTTTTTTCCCSEEEECTT-CCEECTTTTTTCTTCCEEEECCSS
T ss_pred cccccce-eeeecccceecccccccccccce--eeEeccccccccceeEEEECCc-ccccccchhhhccccceecccccc
Confidence 9999764 44444 46788999999999865 4444443334467888887654 222333445566666554332221
Q ss_pred CCCCCCCCcccccccccccccCcceeecCcCCCCChhhhhhhhccCCCcCCceEEEEecCCCCCCCCCccchHHHHhhCC
Q 002308 675 AGGGVDGSKACRLESLKNLEHLQVCCIRRLGDVSDVGEAKLLELDKKKYLSRLRLEFDKKGGGGGRRKNEDDQLLLEALQ 754 (938)
Q Consensus 675 ~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~ 754 (938)
... ... .+..........+. .......+..+.+..+ +. ..-...+.
T Consensus 217 ~~~-~~~----~~~~~~~~~~~~~~-----------------~~~~~~~~~~~~ip~~-v~-----------~i~~~aF~ 262 (394)
T 4gt6_A 217 YPA-IDN----VLYEKSANGDYALI-----------------RYPSQREDPAFKIPNG-VA-----------RIETHAFD 262 (394)
T ss_dssp SCB-SSS----CEEEECTTSCEEEE-----------------ECCTTCCCSEEECCTT-EE-----------EECTTTTT
T ss_pred ccc-ccc----eeeccccccccccc-----------------ccccccccceEEcCCc-ce-----------Ecccceee
Confidence 111 000 00000000000000 0000111111111000 00 00012455
Q ss_pred CCCCCCeEEEeeecCCCCCCCchhccCCCCEEEEecCCCCCcCCC--CCCCCccceeecccccCceEeCcccccCCCCCC
Q 002308 755 PPLNLKELEIHYYGGNTVFPSWMASLTNLKSLDLCFCENCEQLPP--LGKLPSLEQLFISYMSSVKRVGDEFLGVESDRH 832 (938)
Q Consensus 755 ~~~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~l~~--l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~l~~ 832 (938)
.+.+|+.+.+..... ..-...+..+++|+.+.+... + ..++. +.+|.+|+.+.|..+ ++.++...+.
T Consensus 263 ~c~~L~~i~lp~~~~-~I~~~aF~~c~~L~~i~l~~~-i-~~I~~~aF~~c~~L~~i~lp~~--v~~I~~~aF~------ 331 (394)
T 4gt6_A 263 SCAYLASVKMPDSVV-SIGTGAFMNCPALQDIEFSSR-I-TELPESVFAGCISLKSIDIPEG--ITQILDDAFA------ 331 (394)
T ss_dssp TCSSCCEEECCTTCC-EECTTTTTTCTTCCEEECCTT-C-CEECTTTTTTCTTCCEEECCTT--CCEECTTTTT------
T ss_pred ecccccEEecccccc-eecCcccccccccccccCCCc-c-cccCceeecCCCCcCEEEeCCc--ccEehHhHhh------
Confidence 566677666643322 112334557788888888643 2 23333 788888888888653 6677665442
Q ss_pred CCCCCCcccccCCccceeeccccccccccccccccccccccccccccceecccccccccCCCCCCCCCCCcCEEEEecCc
Q 002308 833 DSSSSSSVIIAFPKLKSLSIFEMEELEEWDYGITRTGNTFINIMPRLSSLTINYCSKLKALPDHIHQTTTLKELRIGECD 912 (938)
Q Consensus 833 ~~~~~~~~~~~~~~L~~L~l~~~~~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~ 912 (938)
++.+|+.+.+-. +++.+. ...|..+++|+.+++.++... + ..+..+.+|+.|.+..+.
T Consensus 332 ----------~C~~L~~i~ip~--sv~~I~-------~~aF~~C~~L~~i~~~~~~~~--~-~~~~~~~~L~~i~i~~~~ 389 (394)
T 4gt6_A 332 ----------GCEQLERIAIPS--SVTKIP-------ESAFSNCTALNNIEYSGSRSQ--W-NAISTDSGLQNLPVAPGS 389 (394)
T ss_dssp ----------TCTTCCEEEECT--TCCBCC-------GGGGTTCTTCCEEEESSCHHH--H-HTCBCCCCC---------
T ss_pred ----------CCCCCCEEEECc--ccCEEh-------HhHhhCCCCCCEEEECCceee--h-hhhhccCCCCEEEeCCCC
Confidence 456677776642 233322 233557888888888875322 1 245567788888776543
No 201
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=97.93 E-value=6.7e-05 Score=78.25 Aligned_cols=149 Identities=15% Similarity=0.055 Sum_probs=95.0
Q ss_pred cchhhHHHHHHHHhccCcccCCCeEEEEEEccCCChHHHHHHHHhhhhh-hhcccCeEEEEEeCC-CCCHHHHHHHHHHH
Q 002308 154 GRVGERNALLSMLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNHVE-VKREFDKTLWVCVSE-TFDEFRIAKAMLEA 231 (938)
Q Consensus 154 Gr~~~~~~l~~~l~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~v~~~~~-~~~~f~~~~wv~~~~-~~~~~~~~~~i~~~ 231 (938)
|.+..++.+...+... ......++|++|+||||+|..+++... ....+....++..+. ...++.+ +++.+.
T Consensus 1 g~~~~~~~L~~~i~~~------~~~~~Lf~Gp~G~GKtt~a~~la~~~~~~~~~~~d~~~l~~~~~~~~id~i-r~li~~ 73 (305)
T 2gno_A 1 GAKDQLETLKRIIEKS------EGISILINGEDLSYPREVSLELPEYVEKFPPKASDVLEIDPEGENIGIDDI-RTIKDF 73 (305)
T ss_dssp ---CHHHHHHHHHHTC------SSEEEEEECSSSSHHHHHHHHHHHHHHTSCCCTTTEEEECCSSSCBCHHHH-HHHHHH
T ss_pred ChHHHHHHHHHHHHCC------CCcEEEEECCCCCCHHHHHHHHHHhCchhhccCCCEEEEcCCcCCCCHHHH-HHHHHH
Confidence 4456677777777642 257889999999999999999987311 111122334554432 2333222 233333
Q ss_pred hcCCCCCCCcHHHHHHHHHHHhcCceEEEEEecCCCCCccChhHHHHhhhCCCCCcEEEEEcCCh-hhhhhhcCCceEeC
Q 002308 232 LTGSTSNLNALQSLLISIDESIAGKRFLLVLDDVWDGDYIKWEPFYRCLKKGLHGSKILITTRKE-SIVSMMRSTDIISI 310 (938)
Q Consensus 232 l~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtr~~-~v~~~~~~~~~~~l 310 (938)
+...+ ..+++-++|+|+++.......+.+...+....+.+.+|++|.++ .+...+... .+++
T Consensus 74 ~~~~p----------------~~~~~kvviIdead~lt~~a~naLLk~LEep~~~t~fIl~t~~~~kl~~tI~SR-~~~f 136 (305)
T 2gno_A 74 LNYSP----------------ELYTRKYVIVHDCERMTQQAANAFLKALEEPPEYAVIVLNTRRWHYLLPTIKSR-VFRV 136 (305)
T ss_dssp HTSCC----------------SSSSSEEEEETTGGGBCHHHHHHTHHHHHSCCTTEEEEEEESCGGGSCHHHHTT-SEEE
T ss_pred Hhhcc----------------ccCCceEEEeccHHHhCHHHHHHHHHHHhCCCCCeEEEEEECChHhChHHHHce-eEeC
Confidence 32111 12456789999998776666777888887766677777766554 344444445 9999
Q ss_pred CCCChHHHHHHHHHhh
Q 002308 311 EELAEEECWVLFKRLA 326 (938)
Q Consensus 311 ~~L~~~~~~~lf~~~~ 326 (938)
.++++++..+.+...+
T Consensus 137 ~~l~~~~i~~~L~~~~ 152 (305)
T 2gno_A 137 VVNVPKEFRDLVKEKI 152 (305)
T ss_dssp ECCCCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHh
Confidence 9999999999988875
No 202
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=97.92 E-value=2.4e-05 Score=76.90 Aligned_cols=126 Identities=17% Similarity=0.169 Sum_probs=65.7
Q ss_pred Cceecch----hhHHHHHHHHhccCcccCCCeEEEEEEccCCChHHHHHHHHhhhhhhhcccCeEEEEEeCCCCCHHHHH
Q 002308 150 EEICGRV----GERNALLSMLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNHVEVKREFDKTLWVCVSETFDEFRIA 225 (938)
Q Consensus 150 ~~~vGr~----~~~~~l~~~l~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~ 225 (938)
+.|++.. ..++.+.+++..... ......+.|+|++|+|||+||+.+++. .......++|+++. .+.
T Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~l~G~~GtGKT~la~~i~~~--~~~~~~~~~~~~~~------~~~ 94 (202)
T 2w58_A 25 SDVDLNDDGRIKAIRFAERFVAEYEP--GKKMKGLYLHGSFGVGKTYLLAAIANE--LAKRNVSSLIVYVP------ELF 94 (202)
T ss_dssp TSSCCSSHHHHHHHHHHHHHHHHCCS--SCCCCEEEEECSTTSSHHHHHHHHHHH--HHTTTCCEEEEEHH------HHH
T ss_pred hhccCCChhHHHHHHHHHHHHHHhhh--ccCCCeEEEECCCCCCHHHHHHHHHHH--HHHcCCeEEEEEhH------HHH
Confidence 3455543 344455555543321 112267899999999999999999984 33333456666543 344
Q ss_pred HHHHHHhcCCCCCCCcHHHHHHHHHHHhcCceEEEEEecCCCCCccChhH--HHH-hhhCC-CCCcEEEEEcCC
Q 002308 226 KAMLEALTGSTSNLNALQSLLISIDESIAGKRFLLVLDDVWDGDYIKWEP--FYR-CLKKG-LHGSKILITTRK 295 (938)
Q Consensus 226 ~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~~~~~~~--l~~-~l~~~-~~gs~ilvTtr~ 295 (938)
..+...... .........+ ... -+|||||++......|.. +.. .+... ..+.++|+||..
T Consensus 95 ~~~~~~~~~-----~~~~~~~~~~----~~~-~~lilDei~~~~~~~~~~~~ll~~~l~~~~~~~~~~i~tsn~ 158 (202)
T 2w58_A 95 RELKHSLQD-----QTMNEKLDYI----KKV-PVLMLDDLGAEAMSSWVRDDVFGPILQYRMFENLPTFFTSNF 158 (202)
T ss_dssp HHHHHC--------CCCHHHHHHH----HHS-SEEEEEEECCC---CCGGGTTHHHHHHHHHHTTCCEEEEESS
T ss_pred HHHHHHhcc-----chHHHHHHHh----cCC-CEEEEcCCCCCcCCHHHHHHHHHHHHHHHHhCCCCEEEEcCC
Confidence 444433221 1122222222 222 399999996643333322 322 23221 245568888874
No 203
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=97.90 E-value=0.00033 Score=77.69 Aligned_cols=190 Identities=14% Similarity=0.116 Sum_probs=101.7
Q ss_pred CCceecchhhHHHHHHHHhcc----Cc--ccCCCeEEEEEEccCCChHHHHHHHHhhhhhhhcccCeEEEEEeCCCCCHH
Q 002308 149 EEEICGRVGERNALLSMLLCE----SS--EQQKGLHIISIVGMGGIGKTTLAQLACNHVEVKREFDKTLWVCVSETFDEF 222 (938)
Q Consensus 149 ~~~~vGr~~~~~~l~~~l~~~----~~--~~~~~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~ 222 (938)
-+.++|.+...+.+.+.+..+ .. ......+-|.|+|++|+|||+||+.+++. . ...-++.++...
T Consensus 133 ~~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA~aia~~--~----~~~~~~~v~~~~--- 203 (444)
T 2zan_A 133 WSDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATE--A----NNSTFFSISSSD--- 203 (444)
T ss_dssp GGGSCSCHHHHHHHHHHHTHHHHCTTTTSGGGCCCSEEEEECSTTSSHHHHHHHHHHH--C----CSSEEEEECCC----
T ss_pred HHHhcCHHHHHHHHHHHHHHHhhCHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHH--c----CCCCEEEEeHHH---
Confidence 356899999999888876321 00 00124467899999999999999999984 2 112233333221
Q ss_pred HHHHHHHHHhcCCCCCCCcHHHHHHHHHHHhcCceEEEEEecCCCCCc-------cChhHHH----HhhhC---CCCCcE
Q 002308 223 RIAKAMLEALTGSTSNLNALQSLLISIDESIAGKRFLLVLDDVWDGDY-------IKWEPFY----RCLKK---GLHGSK 288 (938)
Q Consensus 223 ~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~~-------~~~~~l~----~~l~~---~~~gs~ 288 (938)
+ .....+. .......+. ...-..++.+|+||+++.... .....+. ..+.. ...+..
T Consensus 204 -l----~~~~~g~--~~~~~~~~f---~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~~v~ 273 (444)
T 2zan_A 204 -L----VSKWLGE--SEKLVKNLF---QLARENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVDNDGIL 273 (444)
T ss_dssp ---------------CCCTHHHHH---HHHHHSCSEEEEESCTTTTCCCSSCCCCGGGHHHHHHHHTTTTCSSCCCSSCE
T ss_pred -H----Hhhhcch--HHHHHHHHH---HHHHHcCCeEEEEechHhhccCCCCccccHHHHHHHHHHHHHhCcccCCCCEE
Confidence 1 1111111 111222222 222235678999999965310 1111222 22221 124555
Q ss_pred EEEEcCChhhhhh-h--cCCceEeCCCCChHHHHHHHHHhhcCCCCCchhhHHHHHHHHHHHhcCC-ChhHHHHHHh
Q 002308 289 ILITTRKESIVSM-M--RSTDIISIEELAEEECWVLFKRLAFFGRSTEECEKLEQIGQRIARKCKG-LPLAAKTMGS 361 (938)
Q Consensus 289 ilvTtr~~~v~~~-~--~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g-~Plai~~~~~ 361 (938)
||.||..+..... . .-...+.+...+.++..++|..++......... .....|++.+.| .+-.|..++.
T Consensus 274 vI~atn~~~~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~~~l~~----~~l~~la~~t~G~sgadl~~l~~ 346 (444)
T 2zan_A 274 VLGATNIPWVLDSAIRRRFEKRIYIPLPEAHARAAMFRLHLGSTQNSLTE----ADFQELGRKTDGYSGADISIIVR 346 (444)
T ss_dssp EEEEESCGGGSCHHHHTTCCEEEECCCCCHHHHHHHHHHHHTTSCEECCH----HHHHHHHHHTTTCCHHHHHHHHH
T ss_pred EEecCCCccccCHHHHhhcceEEEeCCcCHHHHHHHHHHHHhcCCCCCCH----HHHHHHHHHcCCCCHHHHHHHHH
Confidence 6667765432111 1 123467888888888899998876432211111 235678888887 5556665554
No 204
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=97.89 E-value=0.00022 Score=77.85 Aligned_cols=190 Identities=14% Similarity=0.081 Sum_probs=100.9
Q ss_pred CCCceecchhhHHHHHHHHhccCc------ccCCCeEEEEEEccCCChHHHHHHHHhhhhhhhcccCeEEEEEeCCCCCH
Q 002308 148 DEEEICGRVGERNALLSMLLCESS------EQQKGLHIISIVGMGGIGKTTLAQLACNHVEVKREFDKTLWVCVSETFDE 221 (938)
Q Consensus 148 ~~~~~vGr~~~~~~l~~~l~~~~~------~~~~~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~ 221 (938)
.-..++|.+..++.+.+.+..... ......+-+.|+|++|+|||++|+.+++. ... ..+.++++.-..
T Consensus 113 ~~~~iiG~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~aia~~--~~~---~~~~v~~~~l~~- 186 (389)
T 3vfd_A 113 KFDDIAGQDLAKQALQEIVILPSLRPELFTGLRAPARGLLLFGPPGNGKTMLAKAVAAE--SNA---TFFNISAASLTS- 186 (389)
T ss_dssp CGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGCCCSEEEEESSTTSCHHHHHHHHHHH--TTC---EEEEECSCCC---
T ss_pred ChHHhCCHHHHHHHHHHHHHHhccCHHHhcccCCCCceEEEECCCCCCHHHHHHHHHHh--hcC---cEEEeeHHHhhc-
Confidence 345799999999999888732110 00123467899999999999999999873 222 223333332111
Q ss_pred HHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHhcCceEEEEEecCCCCC-----------ccChhHHHHhhhCC----CCC
Q 002308 222 FRIAKAMLEALTGSTSNLNALQSLLISIDESIAGKRFLLVLDDVWDGD-----------YIKWEPFYRCLKKG----LHG 286 (938)
Q Consensus 222 ~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~-----------~~~~~~l~~~l~~~----~~g 286 (938)
. .. . .........+...-...+.+|+||+++... ......+...+... ...
T Consensus 187 -~--------~~----g-~~~~~~~~~~~~a~~~~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~ 252 (389)
T 3vfd_A 187 -K--------YV----G-EGEKLVRALFAVARELQPSIIFIDQVDSLLCERREGEHDASRRLKTEFLIEFDGVQSAGDDR 252 (389)
T ss_dssp -------------------CHHHHHHHHHHHHHSSSEEEEEETGGGGC--------CTHHHHHHHHHHHHHHHC-----C
T ss_pred -c--------cc----c-hHHHHHHHHHHHHHhcCCeEEEEECchhhcccCCCccchHHHHHHHHHHHHhhcccccCCCC
Confidence 0 00 0 001111222222223456799999995420 00111222222211 223
Q ss_pred cEEEEEcCChhhh-hhh-cC-CceEeCCCCChHHHHHHHHHhhcCCCCCchhhHHHHHHHHHHHhcCCChh-HHHHHHh
Q 002308 287 SKILITTRKESIV-SMM-RS-TDIISIEELAEEECWVLFKRLAFFGRSTEECEKLEQIGQRIARKCKGLPL-AAKTMGS 361 (938)
Q Consensus 287 s~ilvTtr~~~v~-~~~-~~-~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl-ai~~~~~ 361 (938)
..||.||...... ... .. ...+.+...+.++..+++...+........ .+....|++.+.|..- ++..+..
T Consensus 253 v~vI~atn~~~~l~~~l~~R~~~~i~i~~p~~~~r~~il~~~~~~~~~~l~----~~~~~~la~~~~g~~~~~l~~L~~ 327 (389)
T 3vfd_A 253 VLVMGATNRPQELDEAVLRRFIKRVYVSLPNEETRLLLLKNLLCKQGSPLT----QKELAQLARMTDGYSGSDLTALAK 327 (389)
T ss_dssp EEEEEEESCGGGCCHHHHTTCCEEEECCCCCHHHHHHHHHHHHTTSCCCSC----HHHHHHHHHHTTTCCHHHHHHHHH
T ss_pred EEEEEecCCchhcCHHHHcCcceEEEcCCcCHHHHHHHHHHHHHhcCCCCC----HHHHHHHHHHcCCCCHHHHHHHHH
Confidence 4555566543221 111 11 246889999999999999887643322211 1235678888887543 5555543
No 205
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=97.89 E-value=0.0002 Score=75.06 Aligned_cols=181 Identities=14% Similarity=0.098 Sum_probs=100.0
Q ss_pred CCceecchhhHHHHHHHHhccCc-------ccCCCeEEEEEEccCCChHHHHHHHHhhhhhhhcccCeEEEEEeCCCCCH
Q 002308 149 EEEICGRVGERNALLSMLLCESS-------EQQKGLHIISIVGMGGIGKTTLAQLACNHVEVKREFDKTLWVCVSETFDE 221 (938)
Q Consensus 149 ~~~~vGr~~~~~~l~~~l~~~~~-------~~~~~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~ 221 (938)
-..++|.+..++++.+++...-. -+-...+.+.|+|++|+|||++|+.+++. .... ++.+. .
T Consensus 14 ~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~Gp~GtGKT~la~ala~~--~~~~-----~i~v~----~ 82 (301)
T 3cf0_A 14 WEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANE--CQAN-----FISIK----G 82 (301)
T ss_dssp GGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCSEEEEECSSSSSHHHHHHHHHHH--TTCE-----EEEEC----H
T ss_pred HHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCceEEEECCCCcCHHHHHHHHHHH--hCCC-----EEEEE----h
Confidence 34689999888888887653200 00124567899999999999999999984 3322 22222 1
Q ss_pred HHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHhcCceEEEEEecCCCCC--------------ccChhHHHHhhhCC--CC
Q 002308 222 FRIAKAMLEALTGSTSNLNALQSLLISIDESIAGKRFLLVLDDVWDGD--------------YIKWEPFYRCLKKG--LH 285 (938)
Q Consensus 222 ~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~--------------~~~~~~l~~~l~~~--~~ 285 (938)
.++. ..+.+.. . ......+.......+.+|++|++.... ......+...+... ..
T Consensus 83 ~~l~----~~~~g~~--~---~~~~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~ 153 (301)
T 3cf0_A 83 PELL----TMWFGES--E---ANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKK 153 (301)
T ss_dssp HHHH----HHHHTTC--T---THHHHHHHHHHHTCSEEEEECSTTHHHHHHTTTTCCSSCSCCHHHHHHHHHHHSSCTTS
T ss_pred HHHH----hhhcCch--H---HHHHHHHHHHHhcCCeEEEEEChHHHhhccCCCcCCcchHHHHHHHHHHHHhhcccCCC
Confidence 2222 2222211 1 112223333334567899999995310 00123344444332 23
Q ss_pred CcEEEEEcCChhhhh-h-hc---CCceEeCCCCChHHHHHHHHHhhcCCCCCchhhHHHHHHHHHHHhcCCChh
Q 002308 286 GSKILITTRKESIVS-M-MR---STDIISIEELAEEECWVLFKRLAFFGRSTEECEKLEQIGQRIARKCKGLPL 354 (938)
Q Consensus 286 gs~ilvTtr~~~v~~-~-~~---~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl 354 (938)
+..||.||....... . .. -...+.+...+.++..+++..++..... ....+ ...+++.+.|.|-
T Consensus 154 ~v~vi~atn~~~~ld~al~r~gRf~~~i~i~~p~~~~r~~il~~~l~~~~~-~~~~~----~~~la~~~~g~sg 222 (301)
T 3cf0_A 154 NVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPV-AKDVD----LEFLAKMTNGFSG 222 (301)
T ss_dssp SEEEEEEESCGGGSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCB-CSSCC----HHHHHHTCSSCCH
T ss_pred CEEEEEecCCccccChHHhcCCccceEEecCCcCHHHHHHHHHHHHccCCC-Cccch----HHHHHHHcCCCCH
Confidence 556777776553221 1 11 2357889999999999998877643221 11112 2355566666653
No 206
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=97.87 E-value=9.6e-05 Score=78.22 Aligned_cols=136 Identities=12% Similarity=0.197 Sum_probs=76.1
Q ss_pred ceecchhhHHHHHHHHhccCc---ccCCCeEEEEEEccCCChHHHHHHHHhhhhhhhcccCeEEEEEeCCCCCHHHHHHH
Q 002308 151 EICGRVGERNALLSMLLCESS---EQQKGLHIISIVGMGGIGKTTLAQLACNHVEVKREFDKTLWVCVSETFDEFRIAKA 227 (938)
Q Consensus 151 ~~vGr~~~~~~l~~~l~~~~~---~~~~~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~ 227 (938)
.++|.+..++.+...+..... ........+.++|++|+|||++|+.++.. ....-...+.++++....... ...
T Consensus 18 ~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~ll~G~~GtGKt~la~~la~~--~~~~~~~~~~~~~~~~~~~~~-~~~ 94 (311)
T 4fcw_A 18 RVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAAT--LFDTEEAMIRIDMTEYMEKHA-VSR 94 (311)
T ss_dssp TCCSCHHHHHHHHHHHHHHHHTCSCTTSCSEEEEEESCSSSSHHHHHHHHHHH--HHSCGGGEEEEEGGGCCSTTH-HHH
T ss_pred hcCCHHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCcCHHHHHHHHHHH--HcCCCcceEEeeccccccccc-HHH
Confidence 478999998888888765321 00223468999999999999999999884 322222345566554322211 111
Q ss_pred HHHHhcCCCC--CCCcHHHHHHHHHHHhcCceEEEEEecCCCCCccChhHHHHhhhCCC-----------CCcEEEEEcC
Q 002308 228 MLEALTGSTS--NLNALQSLLISIDESIAGKRFLLVLDDVWDGDYIKWEPFYRCLKKGL-----------HGSKILITTR 294 (938)
Q Consensus 228 i~~~l~~~~~--~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~~~~~~~l~~~l~~~~-----------~gs~ilvTtr 294 (938)
+ ++.... ...........+. ....-+++||++..........+...+.... ....+|.||.
T Consensus 95 l---~g~~~~~~~~~~~~~~~~~~~---~~~~~vl~lDEi~~l~~~~~~~Ll~~le~~~~~~~~~~~~~~~~~iiI~ttn 168 (311)
T 4fcw_A 95 L---IGAPPGYVGYEEGGQLTEAVR---RRPYSVILFDAIEKAHPDVFNILLQMLDDGRLTDSHGRTVDFRNTVIIMTSN 168 (311)
T ss_dssp H---HCCCTTSTTTTTCCHHHHHHH---HCSSEEEEEETGGGSCHHHHHHHHHHHHHSEEECTTSCEEECTTEEEEEEES
T ss_pred h---cCCCCccccccccchHHHHHH---hCCCeEEEEeChhhcCHHHHHHHHHHHhcCEEEcCCCCEEECCCcEEEEecc
Confidence 1 221111 1111111222221 2344699999998766555666666665432 2344677776
Q ss_pred C
Q 002308 295 K 295 (938)
Q Consensus 295 ~ 295 (938)
.
T Consensus 169 ~ 169 (311)
T 4fcw_A 169 L 169 (311)
T ss_dssp T
T ss_pred c
Confidence 5
No 207
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=97.81 E-value=4.3e-05 Score=85.42 Aligned_cols=145 Identities=16% Similarity=0.210 Sum_probs=79.8
Q ss_pred CceecchhhHHHHHHHHhccCcccCCCeEEEEEEccCCChHHHHHHHHhhhhhhhccc------C-eEEEEEeCCCCCHH
Q 002308 150 EEICGRVGERNALLSMLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNHVEVKREF------D-KTLWVCVSETFDEF 222 (938)
Q Consensus 150 ~~~vGr~~~~~~l~~~l~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f------~-~~~wv~~~~~~~~~ 222 (938)
+.++||+.+++++...+.... ..-+.|+|++|+|||++|+.++.. +...+ . .++.++++
T Consensus 180 d~iiGr~~~i~~l~~~l~r~~------~~~~LL~G~pG~GKT~la~~la~~--l~~~~~p~~l~~~~~~~l~~~------ 245 (468)
T 3pxg_A 180 DPVIGRSKEIQRVIEVLSRRT------KNNPVLIGEPGVGKTAIAEGLAQQ--IINNEVPEILRDKRVMTLDMG------ 245 (468)
T ss_dssp CCCCCCHHHHHHHHHHHHCSS------SCEEEEESCTTTTTHHHHHHHHHH--HHSSCSCTTTSSCCEECC---------
T ss_pred CCccCcHHHHHHHHHHHhccC------CCCeEEECCCCCCHHHHHHHHHHH--HHhCCCChhhcCCeEEEeeCC------
Confidence 469999999999999997532 234689999999999999999984 32211 1 12222222
Q ss_pred HHHHHHHHHhcCCCCCCCcHHHHHHHHHHHhcCceEEEEEecCCCCCccChhHHHHhhhCCCCCcEEEEEcCChhhhh--
Q 002308 223 RIAKAMLEALTGSTSNLNALQSLLISIDESIAGKRFLLVLDDVWDGDYIKWEPFYRCLKKGLHGSKILITTRKESIVS-- 300 (938)
Q Consensus 223 ~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtr~~~v~~-- 300 (938)
....+. -..... ..+...-..++.+|++|. .......+...+.. ...++|.+|.......
T Consensus 246 -------~~~~g~--~e~~~~---~~~~~~~~~~~~iLfiD~----~~~a~~~L~~~L~~--g~v~vI~at~~~e~~~~~ 307 (468)
T 3pxg_A 246 -------TKYRGE--FEDRLK---KVMDEIRQAGNIILFIDA----AIDASNILKPSLAR--GELQCIGATTLDEYRKYI 307 (468)
T ss_dssp ----------------CTTHH---HHHHHHHTCCCCEEEECC------------CCCTTS--SSCEEEEECCTTTTHHHH
T ss_pred -------ccccch--HHHHHH---HHHHHHHhcCCeEEEEeC----chhHHHHHHHhhcC--CCEEEEecCCHHHHHHHh
Confidence 000000 011122 222223345678999991 11122223333332 2345666665543211
Q ss_pred ----h-hcCCceEeCCCCChHHHHHHHHHhh
Q 002308 301 ----M-MRSTDIISIEELAEEECWVLFKRLA 326 (938)
Q Consensus 301 ----~-~~~~~~~~l~~L~~~~~~~lf~~~~ 326 (938)
. ......+.+.+.+.++..+++...+
T Consensus 308 ~~~~al~~Rf~~i~v~~p~~e~~~~iL~~~~ 338 (468)
T 3pxg_A 308 EKDAALERRFQPIQVDQPSVDESIQILQGLR 338 (468)
T ss_dssp TTCSHHHHSEEEEECCCCCHHHHHHHHHHTT
T ss_pred hcCHHHHHhCccceeCCCCHHHHHHHHHHHH
Confidence 1 1223479999999999999998765
No 208
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=97.76 E-value=9.8e-05 Score=89.38 Aligned_cols=154 Identities=15% Similarity=0.205 Sum_probs=81.7
Q ss_pred CceecchhhHHHHHHHHhccCcccCCCeEEEEEEccCCChHHHHHHHHhhhhhhhc---c--cCeEEEEEeCCCCCHHHH
Q 002308 150 EEICGRVGERNALLSMLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNHVEVKR---E--FDKTLWVCVSETFDEFRI 224 (938)
Q Consensus 150 ~~~vGr~~~~~~l~~~l~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~---~--f~~~~wv~~~~~~~~~~~ 224 (938)
+.++||+.++.++...+... ....+.|+|++|+|||++|+.++....... . -..+++++++.-..
T Consensus 170 d~viGr~~~i~~l~~~l~~~------~~~~vlL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~~l~~---- 239 (854)
T 1qvr_A 170 DPVIGRDEEIRRVIQILLRR------TKNNPVLIGEPGVGKTAIVEGLAQRIVKGDVPEGLKGKRIVSLQMGSLLA---- 239 (854)
T ss_dssp CCCCSCHHHHHHHHHHHHCS------SCCCCEEEECTTSCHHHHHHHHHHHHHHTCSCTTSTTCEEEEECC---------
T ss_pred cccCCcHHHHHHHHHHHhcC------CCCceEEEcCCCCCHHHHHHHHHHHHhcCCCchhhcCCeEEEeehHHhhc----
Confidence 46899999999999998753 233478999999999999999998421110 0 11234443322100
Q ss_pred HHHHHHHhcCCCCCCCcHHHHH-HHHHHHhc-CceEEEEEecCCCCC--------ccChhHHHHhhhCCCCCcEEEEEcC
Q 002308 225 AKAMLEALTGSTSNLNALQSLL-ISIDESIA-GKRFLLVLDDVWDGD--------YIKWEPFYRCLKKGLHGSKILITTR 294 (938)
Q Consensus 225 ~~~i~~~l~~~~~~~~~~~~~~-~~l~~~l~-~~~~LlVlDdv~~~~--------~~~~~~l~~~l~~~~~gs~ilvTtr 294 (938)
+ .....+..... ..+...-. +++.+|++|++.... ......+...+.. .+..+|.||.
T Consensus 240 ---------g-~~~~g~~~~~l~~~~~~~~~~~~~~iL~IDEi~~l~~~~~~~g~~~~~~~L~~~l~~--~~i~~I~at~ 307 (854)
T 1qvr_A 240 ---------G-AKYRGEFEERLKAVIQEVVQSQGEVILFIDELHTVVGAGKAEGAVDAGNMLKPALAR--GELRLIGATT 307 (854)
T ss_dssp ----------------CHHHHHHHHHHHHHTTCSSEEEEECCC-------------------HHHHHT--TCCCEEEEEC
T ss_pred ---------c-CccchHHHHHHHHHHHHHHhcCCCeEEEEecHHHHhccCCccchHHHHHHHHHHHhC--CCeEEEEecC
Confidence 0 00011222222 22222222 467899999996532 1112224444433 2334555554
Q ss_pred Chhhh-----hhh-cCCceEeCCCCChHHHHHHHHHh
Q 002308 295 KESIV-----SMM-RSTDIISIEELAEEECWVLFKRL 325 (938)
Q Consensus 295 ~~~v~-----~~~-~~~~~~~l~~L~~~~~~~lf~~~ 325 (938)
..... ... .....+.+.+.+.++..+++...
T Consensus 308 ~~~~~~~~~d~aL~rRf~~i~l~~p~~~e~~~iL~~~ 344 (854)
T 1qvr_A 308 LDEYREIEKDPALERRFQPVYVDEPTVEETISILRGL 344 (854)
T ss_dssp HHHHHHHTTCTTTCSCCCCEEECCCCHHHHHHHHHHH
T ss_pred chHHhhhccCHHHHhCCceEEeCCCCHHHHHHHHHhh
Confidence 33321 111 22346899999999999988754
No 209
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=97.75 E-value=1.6e-05 Score=73.05 Aligned_cols=111 Identities=9% Similarity=-0.020 Sum_probs=63.8
Q ss_pred CceecchhhHHHHHHHHhccCcccCCCeEEEEEEccCCChHHHHHHHHhhhhhhhcccCeEEEEEeCCCCCHHHHHHHHH
Q 002308 150 EEICGRVGERNALLSMLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNHVEVKREFDKTLWVCVSETFDEFRIAKAML 229 (938)
Q Consensus 150 ~~~vGr~~~~~~l~~~l~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 229 (938)
..++|++..++++.+.+..... ....|.|+|++|+|||++|+.+++... ..+.++++. ... ..
T Consensus 4 ~~~iG~s~~~~~l~~~~~~~~~----~~~~vll~G~~GtGKt~lA~~i~~~~~------~~~~~~~~~---~~~---~~- 66 (143)
T 3co5_A 4 FDKLGNSAAIQEMNREVEAAAK----RTSPVFLTGEAGSPFETVARYFHKNGT------PWVSPARVE---YLI---DM- 66 (143)
T ss_dssp ----CCCHHHHHHHHHHHHHHT----CSSCEEEEEETTCCHHHHHGGGCCTTS------CEECCSSTT---HHH---HC-
T ss_pred cCceeCCHHHHHHHHHHHHHhC----CCCcEEEECCCCccHHHHHHHHHHhCC------CeEEechhh---CCh---Hh-
Confidence 3578999988888888764321 223478999999999999999987421 222222221 110 00
Q ss_pred HHhcCCCCCCCcHHHHHHHHHHHhcCceEEEEEecCCCCCccChhHHHHhhhCC-CCCcEEEEEcCC
Q 002308 230 EALTGSTSNLNALQSLLISIDESIAGKRFLLVLDDVWDGDYIKWEPFYRCLKKG-LHGSKILITTRK 295 (938)
Q Consensus 230 ~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~~~~~~~l~~~l~~~-~~gs~ilvTtr~ 295 (938)
...+.+.. +.-.++||++..........+...+... ..+.++|.||..
T Consensus 67 ----------------~~~~~~~a--~~~~l~lDei~~l~~~~q~~Ll~~l~~~~~~~~~iI~~tn~ 115 (143)
T 3co5_A 67 ----------------PMELLQKA--EGGVLYVGDIAQYSRNIQTGITFIIGKAERCRVRVIASCSY 115 (143)
T ss_dssp ----------------HHHHHHHT--TTSEEEEEECTTCCHHHHHHHHHHHHHHTTTTCEEEEEEEE
T ss_pred ----------------hhhHHHhC--CCCeEEEeChHHCCHHHHHHHHHHHHhCCCCCEEEEEecCC
Confidence 01111111 2346889999876655555566666543 345678877753
No 210
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=97.74 E-value=0.00068 Score=69.22 Aligned_cols=187 Identities=13% Similarity=0.071 Sum_probs=95.4
Q ss_pred CCCceecchhhHHHHHHHHh---ccCcc---cCCCeEEEEEEccCCChHHHHHHHHhhhhhhhcccCeEEEEEeCCCCCH
Q 002308 148 DEEEICGRVGERNALLSMLL---CESSE---QQKGLHIISIVGMGGIGKTTLAQLACNHVEVKREFDKTLWVCVSETFDE 221 (938)
Q Consensus 148 ~~~~~vGr~~~~~~l~~~l~---~~~~~---~~~~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~ 221 (938)
.-+.++|.+...+++.+.+. ....- +....+-+.|+|++|+||||+|+.+++. ....| +.++.+.-.+
T Consensus 10 ~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~--~~~~~---~~i~~~~~~~- 83 (257)
T 1lv7_A 10 TFADVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGE--AKVPF---FTISGSDFVE- 83 (257)
T ss_dssp CGGGSCSCHHHHHHTHHHHHHHHCGGGC-----CCCCEEEEECCTTSCHHHHHHHHHHH--HTCCE---EEECSCSSTT-
T ss_pred CHHHhcCcHHHHHHHHHHHHHHhCHHHHHHcCCCCCCeEEEECcCCCCHHHHHHHHHHH--cCCCE---EEEeHHHHHH-
Confidence 34578999887777665443 21100 0112345889999999999999999884 22222 3333222100
Q ss_pred HHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHhcCceEEEEEecCCCCCc--------------cChhHHHHhhhC--CCC
Q 002308 222 FRIAKAMLEALTGSTSNLNALQSLLISIDESIAGKRFLLVLDDVWDGDY--------------IKWEPFYRCLKK--GLH 285 (938)
Q Consensus 222 ~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~~--------------~~~~~l~~~l~~--~~~ 285 (938)
... ..........++......+.++++|+++.... .....+...+.. ...
T Consensus 84 -------------~~~-~~~~~~~~~~~~~a~~~~~~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~ 149 (257)
T 1lv7_A 84 -------------MFV-GVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNE 149 (257)
T ss_dssp -------------SCC-CCCHHHHHHHHHHHHTTCSEEEEETTHHHHTCCCSTTSCCTTCHHHHHHHHHHHHHHTCCSSS
T ss_pred -------------Hhh-hhhHHHHHHHHHHHHHcCCeeehhhhhhhhccCCCCCcCCCchHHHHHHHHHHHHhhCcccCC
Confidence 000 01112222333333445678999999832110 011122222322 123
Q ss_pred CcEEEEEcCChhhh-hhh-c---CCceEeCCCCChHHHHHHHHHhhcCCCCCchhhHHHHHHHHHHHhcCC-ChhHHHHH
Q 002308 286 GSKILITTRKESIV-SMM-R---STDIISIEELAEEECWVLFKRLAFFGRSTEECEKLEQIGQRIARKCKG-LPLAAKTM 359 (938)
Q Consensus 286 gs~ilvTtr~~~v~-~~~-~---~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g-~Plai~~~ 359 (938)
+..||.||...+.. ... . -...+.+...+.++..+++..+...... ..... ...+++.+.| .+--+..+
T Consensus 150 ~~~vI~~tn~~~~l~~~l~r~~rf~~~i~i~~P~~~~r~~il~~~~~~~~l-~~~~~----~~~la~~~~G~~~~dl~~l 224 (257)
T 1lv7_A 150 GIIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRRVPL-APDID----AAIIARGTPGFSGADLANL 224 (257)
T ss_dssp CEEEEEEESCTTTSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCB-CTTCC----HHHHHHTCTTCCHHHHHHH
T ss_pred CEEEEEeeCCchhCCHHHcCCCcCCeEEEeCCCCHHHHHHHHHHHHhcCCC-Ccccc----HHHHHHHcCCCCHHHHHHH
Confidence 45566676655321 211 1 1346788888888888888776532211 11111 2356667777 66555443
No 211
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=97.73 E-value=0.00041 Score=77.39 Aligned_cols=186 Identities=12% Similarity=0.057 Sum_probs=103.0
Q ss_pred CceecchhhHHHHHHHHhccCcc-------cCCCeEEEEEEccCCChHHHHHHHHhhhhhhhcccCeEEEEEeCCCCCHH
Q 002308 150 EEICGRVGERNALLSMLLCESSE-------QQKGLHIISIVGMGGIGKTTLAQLACNHVEVKREFDKTLWVCVSETFDEF 222 (938)
Q Consensus 150 ~~~vGr~~~~~~l~~~l~~~~~~-------~~~~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~ 222 (938)
..++|.+..++++.+++...... +....+-|.|+|++|+|||++|+.+++. .... .+.++++.
T Consensus 204 ~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~lAraia~~--~~~~---fv~vn~~~----- 273 (489)
T 3hu3_A 204 DDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANE--TGAF---FFLINGPE----- 273 (489)
T ss_dssp GGCCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCEEEEECSTTSSHHHHHHHHHHH--CSSE---EEEEEHHH-----
T ss_pred HHcCCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECcCCCCHHHHHHHHHHH--hCCC---EEEEEchH-----
Confidence 46899999999998877542000 0123456899999999999999999873 3222 23343211
Q ss_pred HHHHHHHHHhcCCCCCCCcHHHHHHHHHHHhcCceEEEEEecCCCCC-----------ccChhHHHHhhhCC--CCCcEE
Q 002308 223 RIAKAMLEALTGSTSNLNALQSLLISIDESIAGKRFLLVLDDVWDGD-----------YIKWEPFYRCLKKG--LHGSKI 289 (938)
Q Consensus 223 ~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~-----------~~~~~~l~~~l~~~--~~gs~i 289 (938)
+...+. ..........+.....+++.+|+||+++... ......+...+... ..+..|
T Consensus 274 -----l~~~~~-----g~~~~~~~~~f~~A~~~~p~iLfLDEId~l~~~~~~~~~~~~~~~~~~LL~~ld~~~~~~~v~v 343 (489)
T 3hu3_A 274 -----IMSKLA-----GESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIV 343 (489)
T ss_dssp -----HHTSCT-----THHHHHHHHHHHHHHHTCSEEEEEESHHHHCBCTTSCCCHHHHHHHHHHHHHHHHSCTTSCEEE
T ss_pred -----hhhhhc-----chhHHHHHHHHHHHHhcCCcEEEecchhhhccccccccchHHHHHHHHHHHHhhccccCCceEE
Confidence 111110 0111222233444445678899999983211 01123344444432 234556
Q ss_pred EEEcCChhh-hhhh----cCCceEeCCCCChHHHHHHHHHhhcCCCCCchhhHHHHHHHHHHHhcCCC-hhHHHHHH
Q 002308 290 LITTRKESI-VSMM----RSTDIISIEELAEEECWVLFKRLAFFGRSTEECEKLEQIGQRIARKCKGL-PLAAKTMG 360 (938)
Q Consensus 290 lvTtr~~~v-~~~~----~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~-Plai~~~~ 360 (938)
|.||..... .... .-...+.+...+.++..+++..++..... ..... ..++++.+.|. +-.+..+.
T Consensus 344 IaaTn~~~~Ld~al~r~gRf~~~i~i~~P~~~eR~~IL~~~~~~~~l-~~~~~----l~~la~~t~g~s~~dL~~L~ 415 (489)
T 3hu3_A 344 MAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKL-ADDVD----LEQVANETHGHVGADLAALC 415 (489)
T ss_dssp EEEESCGGGBCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHTTTSCB-CTTCC----HHHHHHTCTTCCHHHHHHHH
T ss_pred EEecCCccccCHHHhCCCcCceEEEeCCCCHHHHHHHHHHHHhcCCC-cchhh----HHHHHHHccCCcHHHHHHHH
Confidence 666665432 2221 12346899999999999999988643221 11112 34566667664 54554443
No 212
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.72 E-value=6.5e-06 Score=77.06 Aligned_cols=39 Identities=18% Similarity=0.301 Sum_probs=22.4
Q ss_pred cccceecccccccccC--CCCCCCCCCCcCEEEEecCcchHH
Q 002308 877 PRLSSLTINYCSKLKA--LPDHIHQTTTLKELRIGECDLLEE 916 (938)
Q Consensus 877 ~~L~~L~l~~c~~l~~--lp~~l~~l~~L~~L~l~~c~~l~~ 916 (938)
++|++|+|++|+.++. +. .+.++++|++|+|++|+.+++
T Consensus 114 ~~L~~L~Ls~C~~ITD~Gl~-~L~~~~~L~~L~L~~c~~Itd 154 (176)
T 3e4g_A 114 KSMLEMEIISCGNVTDKGII-ALHHFRNLKYLFLSDLPGVKE 154 (176)
T ss_dssp HHCCEEEEESCTTCCHHHHH-HGGGCTTCCEEEEESCTTCCC
T ss_pred CCCCEEEcCCCCcCCHHHHH-HHhcCCCCCEEECCCCCCCCc
Confidence 4566666666665543 11 133466677777777765543
No 213
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=97.68 E-value=8.3e-05 Score=76.57 Aligned_cols=132 Identities=15% Similarity=0.146 Sum_probs=68.5
Q ss_pred CceecchhhHHHHHHHHhccCcccCCCeEEEEEEccCCChHHHHHHHHhhhhhhhcccCeEEEEEeCCCCCHHHHHHHHH
Q 002308 150 EEICGRVGERNALLSMLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNHVEVKREFDKTLWVCVSETFDEFRIAKAML 229 (938)
Q Consensus 150 ~~~vGr~~~~~~l~~~l~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 229 (938)
+.++|++..+.++.+.+..... ....|.|+|++|+|||++|+.+++.. ...-...+.++++.. .. ..+.
T Consensus 6 ~~~ig~~~~~~~~~~~~~~~~~----~~~~vll~G~~GtGKt~la~~i~~~~--~~~~~~~~~v~~~~~-~~-~~~~--- 74 (265)
T 2bjv_A 6 DNLLGEANSFLEVLEQVSHLAP----LDKPVLIIGERGTGKELIASRLHYLS--SRWQGPFISLNCAAL-NE-NLLD--- 74 (265)
T ss_dssp ----CCCHHHHHHHHHHHHHTT----SCSCEEEECCTTSCHHHHHHHHHHTS--TTTTSCEEEEEGGGS-CH-HHHH---
T ss_pred ccceeCCHHHHHHHHHHHHHhC----CCCCEEEECCCCCcHHHHHHHHHHhc--CccCCCeEEEecCCC-Ch-hHHH---
Confidence 4589999998888877654321 22467899999999999999998742 111123455665543 22 2211
Q ss_pred HHhcCCCCCC-CcHHH-HHHHHHHHhcCceEEEEEecCCCCCccChhHHHHhhhCC-----------CCCcEEEEEcCC
Q 002308 230 EALTGSTSNL-NALQS-LLISIDESIAGKRFLLVLDDVWDGDYIKWEPFYRCLKKG-----------LHGSKILITTRK 295 (938)
Q Consensus 230 ~~l~~~~~~~-~~~~~-~~~~l~~~l~~~~~LlVlDdv~~~~~~~~~~l~~~l~~~-----------~~gs~ilvTtr~ 295 (938)
..+.+..... ..... ....+. ....-+|+||++..........+...+..+ ..+.+||.||..
T Consensus 75 ~~l~g~~~~~~~g~~~~~~~~l~---~a~~~~l~lDEi~~l~~~~q~~Ll~~l~~~~~~~~g~~~~~~~~~~iI~atn~ 150 (265)
T 2bjv_A 75 SELFGHEAGAFTGAQKRHPGRFE---RADGGTLFLDELATAPMMVQEKLLRVIEYGELERVGGSQPLQVNVRLVCATNA 150 (265)
T ss_dssp HHHHCCC---------CCCCHHH---HTTTSEEEEESGGGSCHHHHHHHHHHHHHCEECCCCC--CEECCCEEEEEESS
T ss_pred HHhcCCcccccccccccccchhh---hcCCcEEEEechHhcCHHHHHHHHHHHHhCCeecCCCcccccCCeEEEEecCc
Confidence 1221111000 00000 000111 112348999999876544445566555432 134578887765
No 214
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=97.66 E-value=9.1e-05 Score=77.57 Aligned_cols=160 Identities=14% Similarity=0.133 Sum_probs=85.2
Q ss_pred CceecchhhHHHHHHHHhccCcccCCCeEEEEEEccCCChHHHHHHHHhhhhhhhcccCeEEEEEeCCCCCHHHHHHHHH
Q 002308 150 EEICGRVGERNALLSMLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNHVEVKREFDKTLWVCVSETFDEFRIAKAML 229 (938)
Q Consensus 150 ~~~vGr~~~~~~l~~~l~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 229 (938)
+.++|+...+.++.+.+..... ....|.|+|++|+|||++|+.+++... +.. ...+.++++.-. ..++.
T Consensus 2 ~~iig~s~~~~~~~~~~~~~a~----~~~~vLi~Ge~GtGKt~lAr~i~~~~~-~~~-~~~v~v~~~~~~--~~l~~--- 70 (304)
T 1ojl_A 2 SHMIGSSPAMQHLLNEIAMVAP----SDATVLIHGDSGTGKELVARALHACSA-RSD-RPLVTLNCAALN--ESLLE--- 70 (304)
T ss_dssp -CCCCCSHHHHHHHHHHHHHCS----TTSCEEEESCTTSCHHHHHHHHHHHSS-CSS-SCCCEEECSSCC--HHHHH---
T ss_pred CCcEECCHHHHHHHHHHHHHhC----CCCcEEEECCCCchHHHHHHHHHHhCc-ccC-CCeEEEeCCCCC--hHHHH---
Confidence 3589999999998888765332 234578999999999999999987421 111 123445554422 22222
Q ss_pred HHhcCCCCCC-CcH-HHHHHHHHHHhcCceEEEEEecCCCCCccChhHHHHhhhCCC-----------CCcEEEEEcCCh
Q 002308 230 EALTGSTSNL-NAL-QSLLISIDESIAGKRFLLVLDDVWDGDYIKWEPFYRCLKKGL-----------HGSKILITTRKE 296 (938)
Q Consensus 230 ~~l~~~~~~~-~~~-~~~~~~l~~~l~~~~~LlVlDdv~~~~~~~~~~l~~~l~~~~-----------~gs~ilvTtr~~ 296 (938)
..+.+..... ... ......+... ..-.|+||++..........+...+.... ...+||.||...
T Consensus 71 ~~lfg~~~g~~tg~~~~~~g~~~~a---~~g~L~LDEi~~l~~~~q~~Ll~~l~~~~~~~~g~~~~~~~~~riI~atn~~ 147 (304)
T 1ojl_A 71 SELFGHEKGAFTGADKRREGRFVEA---DGGTLFLDEIGDISPLMQVRLLRAIQEREVQRVGSNQTISVDVRLIAATHRD 147 (304)
T ss_dssp HHHTCCCSSCCC---CCCCCHHHHH---TTSEEEEESCTTCCHHHHHHHHHHHHSSBCCBTTBCCCCBCCCEEEEEESSC
T ss_pred HHhcCccccccCchhhhhcCHHHhc---CCCEEEEeccccCCHHHHHHHHHHHhcCEeeecCCcccccCCeEEEEecCcc
Confidence 2222221110 000 0000111111 12368899998766555555666665432 346788777653
Q ss_pred h---hhh---------hhcCCceEeCCCCC--hHHHHHHHHH
Q 002308 297 S---IVS---------MMRSTDIISIEELA--EEECWVLFKR 324 (938)
Q Consensus 297 ~---v~~---------~~~~~~~~~l~~L~--~~~~~~lf~~ 324 (938)
- +.. .+. ...+.+.+|. .++...++..
T Consensus 148 l~~~v~~g~fr~~L~~Rl~-~~~i~lPpL~eR~edi~~l~~~ 188 (304)
T 1ojl_A 148 LAEEVSAGRFRQDLYYRLN-VVAIEMPSLRQRREDIPLLADH 188 (304)
T ss_dssp HHHHHHHTSSCHHHHHHHS-SEEEECCCSGGGGGGHHHHHHH
T ss_pred HHHHHHhCCcHHHHHhhcC-eeEEeccCHHHhHhhHHHHHHH
Confidence 1 110 111 2357788887 4555555443
No 215
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.65 E-value=0.00074 Score=72.02 Aligned_cols=178 Identities=13% Similarity=0.079 Sum_probs=97.7
Q ss_pred CCceecchhhHHHHHHHHhccCc-------ccCCCeEEEEEEccCCChHHHHHHHHhhhhhhhcccCeEEEEEeCCCCCH
Q 002308 149 EEEICGRVGERNALLSMLLCESS-------EQQKGLHIISIVGMGGIGKTTLAQLACNHVEVKREFDKTLWVCVSETFDE 221 (938)
Q Consensus 149 ~~~~vGr~~~~~~l~~~l~~~~~-------~~~~~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~ 221 (938)
-+.+.|-++..++|.+.+.-+-. -+-..++=|.++|++|+|||.||+++++. ....| +.+..+.-.
T Consensus 147 ~~dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~gi~~prGvLL~GPPGTGKTllAkAiA~e--~~~~f---~~v~~s~l~-- 219 (405)
T 4b4t_J 147 YDMVGGLTKQIKEIKEVIELPVKHPELFESLGIAQPKGVILYGPPGTGKTLLARAVAHH--TDCKF---IRVSGAELV-- 219 (405)
T ss_dssp GGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCCEEEESCSSSSHHHHHHHHHHH--HTCEE---EEEEGGGGS--
T ss_pred HHHhCCHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCceEEeCCCCCCHHHHHHHHHHh--hCCCc---eEEEhHHhh--
Confidence 35678888888887776542100 01234566899999999999999999983 33333 334433211
Q ss_pred HHHHHHHHHHhcCCCCCCCcHHHHH-HHHHHHhcCceEEEEEecCCCCC--------cc------ChhHHHHhhhC--CC
Q 002308 222 FRIAKAMLEALTGSTSNLNALQSLL-ISIDESIAGKRFLLVLDDVWDGD--------YI------KWEPFYRCLKK--GL 284 (938)
Q Consensus 222 ~~~~~~i~~~l~~~~~~~~~~~~~~-~~l~~~l~~~~~LlVlDdv~~~~--------~~------~~~~l~~~l~~--~~ 284 (938)
... ..+.+... ..+...-...+.+|++|+++..- .. ....++..+.. ..
T Consensus 220 ------------sk~--vGese~~vr~lF~~Ar~~aP~IIFiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~ 285 (405)
T 4b4t_J 220 ------------QKY--IGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSTRVEGSGGGDSEVQRTMLELLNQLDGFETS 285 (405)
T ss_dssp ------------CSS--TTHHHHHHHHHHHHHHHTCSEEEEEESSSCCTTSCSCSSSGGGGHHHHHHHHHHHHHHTTTCC
T ss_pred ------------ccc--cchHHHHHHHHHHHHHHhCCceEeeecchhhccCCCCCCCCCcHHHHHHHHHHHHhhhccCCC
Confidence 000 01111111 12222224578999999986421 00 01223333332 23
Q ss_pred CCcEEEEEcCChhhhhh-h----cCCceEeCCCCChHHHHHHHHHhhcCCCCCchhhHHHHHHHHHHHhcCCC
Q 002308 285 HGSKILITTRKESIVSM-M----RSTDIISIEELAEEECWVLFKRLAFFGRSTEECEKLEQIGQRIARKCKGL 352 (938)
Q Consensus 285 ~gs~ilvTtr~~~v~~~-~----~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~ 352 (938)
.+..||.||..++.... + .-...+.+..-+.++..++|+.+....... ..-+ ...+++.+.|.
T Consensus 286 ~~V~vIaATNrpd~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~l~-~dvd----l~~lA~~t~G~ 353 (405)
T 4b4t_J 286 KNIKIIMATNRLDILDPALLRPGRIDRKIEFPPPSVAARAEILRIHSRKMNLT-RGIN----LRKVAEKMNGC 353 (405)
T ss_dssp CCEEEEEEESCSSSSCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHTTSBCC-SSCC----HHHHHHHCCSC
T ss_pred CCeEEEeccCChhhCCHhHcCCCcCceEEEcCCcCHHHHHHHHHHHhcCCCCC-ccCC----HHHHHHHCCCC
Confidence 34456667765543221 1 235688999889999999998776432211 1112 35677777764
No 216
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.64 E-value=7.6e-06 Score=82.98 Aligned_cols=80 Identities=24% Similarity=0.304 Sum_probs=57.9
Q ss_pred cccCCCCeeeecCCccccc---cccccCCCCccEEEcCCCCCcccccccccccC--ccceeecCCCcccccCCc------
Q 002308 589 EKLVHLRYLNLSDQKIKKL---PETLCELYNLEKLDISGCSDLRELPKGIGKLI--NMKHLLNSGTRSLRYMPV------ 657 (938)
Q Consensus 589 ~~l~~L~~L~L~~~~i~~l---p~~i~~l~~L~~L~l~~~~~l~~lp~~i~~l~--~L~~L~l~~~~~~~~~p~------ 657 (938)
.++++|++|+|++|.|+.+ |..+..+++|+.|+|++|. +..+ ..+..+. +|++|+|++|.....+|.
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~-i~~~-~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~ 244 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNE-LKSE-RELDKIKGLKLEELWLDGNSLCDTFRDQSTYIS 244 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSC-CCSG-GGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHH
T ss_pred hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCc-cCCc-hhhhhcccCCcceEEccCCcCccccCcchhHHH
Confidence 4678999999999998854 4667789999999999998 4444 2355555 899999999876655542
Q ss_pred -cCCCCCCCcccCe
Q 002308 658 -GIGRLTGLRTLGE 670 (938)
Q Consensus 658 -~l~~l~~L~~L~l 670 (938)
.+..+++|+.|+.
T Consensus 245 ~il~~~P~L~~LDg 258 (267)
T 3rw6_A 245 AIRERFPKLLRLDG 258 (267)
T ss_dssp HHHHHCTTCCEESS
T ss_pred HHHHHCcccCeECC
Confidence 2445666666654
No 217
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=97.63 E-value=0.00067 Score=72.20 Aligned_cols=178 Identities=20% Similarity=0.241 Sum_probs=96.2
Q ss_pred CceecchhhHHHHHHHHhccCcccCCCeEEEEEEccCCChHHHHHHHHhhhhhhhcccCeEEEEEeCCCCCHHHHHHHHH
Q 002308 150 EEICGRVGERNALLSMLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNHVEVKREFDKTLWVCVSETFDEFRIAKAML 229 (938)
Q Consensus 150 ~~~vGr~~~~~~l~~~l~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 229 (938)
+.++|.+..++.+...+...... +.....++|+|++|+||||||+.++.. ....|. .....-....
T Consensus 25 ~~~~g~~~~~~~l~~~i~~~~~~-~~~~~~~ll~Gp~G~GKTTLa~~ia~~--l~~~~~---~~sg~~~~~~-------- 90 (334)
T 1in4_A 25 DEFIGQENVKKKLSLALEAAKMR-GEVLDHVLLAGPPGLGKTTLAHIIASE--LQTNIH---VTSGPVLVKQ-------- 90 (334)
T ss_dssp GGCCSCHHHHHHHHHHHHHHHHH-TCCCCCEEEESSTTSSHHHHHHHHHHH--HTCCEE---EEETTTCCSH--------
T ss_pred HHccCcHHHHHHHHHHHHHHHhc-CCCCCeEEEECCCCCcHHHHHHHHHHH--hCCCEE---EEechHhcCH--------
Confidence 46889888777777766532110 123467899999999999999999984 322221 1111110111
Q ss_pred HHhcCCCCCCCcHHHHHHHHHHHhcCceEEEEEecCCCCCccChhHHHHhhhCCC------------------CCcEEE-
Q 002308 230 EALTGSTSNLNALQSLLISIDESIAGKRFLLVLDDVWDGDYIKWEPFYRCLKKGL------------------HGSKIL- 290 (938)
Q Consensus 230 ~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~~~~~~~l~~~l~~~~------------------~gs~il- 290 (938)
.+... +...+ .++-++++|++........+.+...+.... +...++
T Consensus 91 -------------~~l~~-~~~~~-~~~~v~~iDE~~~l~~~~~e~L~~~~~~~~~~i~~~~~~~~~~i~~~l~~~~li~ 155 (334)
T 1in4_A 91 -------------GDMAA-ILTSL-ERGDVLFIDEIHRLNKAVEELLYSAIEDFQIDIMIGKGPSAKSIRIDIQPFTLVG 155 (334)
T ss_dssp -------------HHHHH-HHHHC-CTTCEEEEETGGGCCHHHHHHHHHHHHTSCCCC---------------CCCEEEE
T ss_pred -------------HHHHH-HHHHc-cCCCEEEEcchhhcCHHHHHHHHHHHHhcccceeeccCcccccccccCCCeEEEE
Confidence 11111 11112 233477788886543222333433332211 011222
Q ss_pred EEcCChhhhhhhcC--CceEeCCCCChHHHHHHHHHhhcCCCCCchhhHHHHHHHHHHHhcCCChhHHHHHH
Q 002308 291 ITTRKESIVSMMRS--TDIISIEELAEEECWVLFKRLAFFGRSTEECEKLEQIGQRIARKCKGLPLAAKTMG 360 (938)
Q Consensus 291 vTtr~~~v~~~~~~--~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~~~ 360 (938)
.|++...+...... .-...+++.+.++-.+++.+.+........ .+.+..|++.+.|.|..+..+.
T Consensus 156 at~~~~~Ls~~l~sR~~l~~~Ld~~~~~~l~~iL~~~~~~~~~~~~----~~~~~~ia~~~~G~~R~a~~ll 223 (334)
T 1in4_A 156 ATTRSGLLSSPLRSRFGIILELDFYTVKELKEIIKRAASLMDVEIE----DAAAEMIAKRSRGTPRIAIRLT 223 (334)
T ss_dssp EESCGGGSCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHTTCCBC----HHHHHHHHHTSTTCHHHHHHHH
T ss_pred ecCCcccCCHHHHHhcCceeeCCCCCHHHHHHHHHHHHHHcCCCcC----HHHHHHHHHhcCCChHHHHHHH
Confidence 34443332222211 225789999999999999887643222111 2347889999999997654443
No 218
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=97.63 E-value=0.00035 Score=77.92 Aligned_cols=97 Identities=14% Similarity=0.078 Sum_probs=59.0
Q ss_pred EEEEecCCCCCccChhHHHHhhhCCCCCcEEEEEc---------CC----h-hhh-hhhcCCceEeCCCCChHHHHHHHH
Q 002308 259 LLVLDDVWDGDYIKWEPFYRCLKKGLHGSKILITT---------RK----E-SIV-SMMRSTDIISIEELAEEECWVLFK 323 (938)
Q Consensus 259 LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTt---------r~----~-~v~-~~~~~~~~~~l~~L~~~~~~~lf~ 323 (938)
++++|++...+...++.+...+...... .+|+.| .+ + .+. ........+.+.+++.++..+++.
T Consensus 298 VliIDEa~~l~~~a~~aLlk~lEe~~~~-~~il~tn~~~~~i~~~~~~~~~~~l~~~i~sR~~~~~~~~~~~~e~~~iL~ 376 (456)
T 2c9o_A 298 VLFVDEVHMLDIECFTYLHRALESSIAP-IVIFASNRGNCVIRGTEDITSPHGIPLDLLDRVMIIRTMLYTPQEMKQIIK 376 (456)
T ss_dssp EEEEESGGGCBHHHHHHHHHHTTSTTCC-EEEEEECCSEEECBTTSSCEEETTCCHHHHTTEEEEECCCCCHHHHHHHHH
T ss_pred EEEEechhhcCHHHHHHHHHHhhccCCC-EEEEecCCccccccccccccccccCChhHHhhcceeeCCCCCHHHHHHHHH
Confidence 8999999887666677777777654444 344344 11 1 111 112334567999999999999998
Q ss_pred HhhcCCCCCchhhHHHHHHHHHHHhc-CCChhHHHHHH
Q 002308 324 RLAFFGRSTEECEKLEQIGQRIARKC-KGLPLAAKTMG 360 (938)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~i~~~~-~g~Plai~~~~ 360 (938)
..+........ .+....|++.+ .|.|.....+.
T Consensus 377 ~~~~~~~~~~~----~~~~~~i~~~a~~g~~r~a~~ll 410 (456)
T 2c9o_A 377 IRAQTEGINIS----EEALNHLGEIGTKTTLRYSVQLL 410 (456)
T ss_dssp HHHHHHTCCBC----HHHHHHHHHHHHHSCHHHHHHTH
T ss_pred HHHHHhCCCCC----HHHHHHHHHHccCCCHHHHHHHH
Confidence 77532121111 22356677777 77776554443
No 219
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=97.61 E-value=0.00033 Score=76.41 Aligned_cols=68 Identities=15% Similarity=0.169 Sum_probs=33.7
Q ss_pred hCCCCCCCCeEEEeeecCCCCCCCchhccCCCCEEEEecCCCCCcCCC--CCCCCccceeecccccCceEeCcc
Q 002308 752 ALQPPLNLKELEIHYYGGNTVFPSWMASLTNLKSLDLCFCENCEQLPP--LGKLPSLEQLFISYMSSVKRVGDE 823 (938)
Q Consensus 752 ~l~~~~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~l~~--l~~l~~L~~L~L~~~~~l~~~~~~ 823 (938)
.+..+.+|+.+.+..+ +...-...+..+.+|+.+.+..+ ...++. +.+|++|+.+.+.++. ++.++..
T Consensus 235 ~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~--i~~i~~~aF~~c~~L~~i~l~~~~-i~~I~~~ 304 (379)
T 4h09_A 235 AFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK--VKTVPYLLCSGCSNLTKVVMDNSA-IETLEPR 304 (379)
T ss_dssp TTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC--CSEECTTTTTTCTTCCEEEECCTT-CCEECTT
T ss_pred cccCCccceEEEcCCC-ccEeCccccceeehhcccccccc--ceeccccccccccccccccccccc-cceehhh
Confidence 3444556666665432 22212233445666666666543 122222 5666666666665443 5555544
No 220
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.59 E-value=0.0013 Score=71.34 Aligned_cols=178 Identities=15% Similarity=0.128 Sum_probs=97.5
Q ss_pred CCceecchhhHHHHHHHHhccCc-------ccCCCeEEEEEEccCCChHHHHHHHHhhhhhhhcccCeEEEEEeCCCCCH
Q 002308 149 EEEICGRVGERNALLSMLLCESS-------EQQKGLHIISIVGMGGIGKTTLAQLACNHVEVKREFDKTLWVCVSETFDE 221 (938)
Q Consensus 149 ~~~~vGr~~~~~~l~~~l~~~~~-------~~~~~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~ 221 (938)
-+.+.|-+...++|.+.+.-+-. -+-..++=|.++|++|+|||+||+++++. ....| +.+..+.-.+
T Consensus 180 ~~digGl~~~k~~l~e~v~~pl~~p~~f~~~g~~~prGvLL~GPPGtGKTllAkAiA~e--~~~~~---~~v~~s~l~s- 253 (437)
T 4b4t_L 180 FDGIGGLTEQIRELREVIELPLKNPEIFQRVGIKPPKGVLLYGPPGTGKTLLAKAVAAT--IGANF---IFSPASGIVD- 253 (437)
T ss_dssp SGGGCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHH--HTCEE---EEEEGGGTCC-
T ss_pred hhHhCChHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeEEEECCCCCcHHHHHHHHHHH--hCCCE---EEEehhhhcc-
Confidence 35678888888877776543110 01234577899999999999999999984 33332 3344332110
Q ss_pred HHHHHHHHHHhcCCCCCCCcHHHHHH-HHHHHhcCceEEEEEecCCCCC------cc--------ChhHHHHhhhC--CC
Q 002308 222 FRIAKAMLEALTGSTSNLNALQSLLI-SIDESIAGKRFLLVLDDVWDGD------YI--------KWEPFYRCLKK--GL 284 (938)
Q Consensus 222 ~~~~~~i~~~l~~~~~~~~~~~~~~~-~l~~~l~~~~~LlVlDdv~~~~------~~--------~~~~l~~~l~~--~~ 284 (938)
. ...+.....+ .....-...+.+|++|+++..- .. ....++..+.. ..
T Consensus 254 -------------k--~~Gese~~ir~~F~~A~~~~P~IifiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~ 318 (437)
T 4b4t_L 254 -------------K--YIGESARIIREMFAYAKEHEPCIIFMDEVDAIGGRRFSEGTSADREIQRTLMELLTQMDGFDNL 318 (437)
T ss_dssp -------------S--SSSHHHHHHHHHHHHHHHSCSEEEEEECCCSSSCCCSSSCCSSTTHHHHHHHHHHHHHHSSSCT
T ss_pred -------------c--cchHHHHHHHHHHHHHHhcCCceeeeecccccccccccCCCCcchHHHHHHHHHHHHhhcccCC
Confidence 0 0111111122 2222234578999999995311 00 01223333332 22
Q ss_pred CCcEEEEEcCChhhhhh-h-c---CCceEeCCCCChHHHHHHHHHhhcCCCCCchhhHHHHHHHHHHHhcCCC
Q 002308 285 HGSKILITTRKESIVSM-M-R---STDIISIEELAEEECWVLFKRLAFFGRSTEECEKLEQIGQRIARKCKGL 352 (938)
Q Consensus 285 ~gs~ilvTtr~~~v~~~-~-~---~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~ 352 (938)
.+..||.||..++.... + . -...+.+..-+.++..++|..+...-... ..-+ ...+++.+.|.
T Consensus 319 ~~vivI~ATNrp~~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~~-~d~d----l~~lA~~t~G~ 386 (437)
T 4b4t_L 319 GQTKIIMATNRPDTLDPALLRPGRLDRKVEIPLPNEAGRLEIFKIHTAKVKKT-GEFD----FEAAVKMSDGF 386 (437)
T ss_dssp TSSEEEEEESSTTSSCTTTTSTTSEEEEECCCCCCHHHHHHHHHHHHHTSCBC-SCCC----HHHHHHTCCSC
T ss_pred CCeEEEEecCCchhhCHHHhCCCccceeeecCCcCHHHHHHHHHHHhcCCCCC-cccC----HHHHHHhCCCC
Confidence 34567777766543322 1 1 23478888878888888888776432211 1112 35677777764
No 221
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.58 E-value=0.00066 Score=73.59 Aligned_cols=178 Identities=14% Similarity=0.099 Sum_probs=91.8
Q ss_pred CCceecchhhHHHHHHHHhccCc-------ccCCCeEEEEEEccCCChHHHHHHHHhhhhhhhcccCeEEEEEeCCCCCH
Q 002308 149 EEEICGRVGERNALLSMLLCESS-------EQQKGLHIISIVGMGGIGKTTLAQLACNHVEVKREFDKTLWVCVSETFDE 221 (938)
Q Consensus 149 ~~~~vGr~~~~~~l~~~l~~~~~-------~~~~~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~ 221 (938)
-+++.|-+...++|.+.+.-+-. -+-...+=|.++|++|+|||++|+++++. ....| +.+..+.-.+
T Consensus 171 ~~digGl~~~k~~l~e~v~~pl~~p~~~~~~g~~~prGiLL~GPPGtGKT~lakAiA~~--~~~~~---~~v~~~~l~~- 244 (428)
T 4b4t_K 171 YADVGGLDMQKQEIREAVELPLVQADLYEQIGIDPPRGVLLYGPPGTGKTMLVKAVANS--TKAAF---IRVNGSEFVH- 244 (428)
T ss_dssp GGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTTTHHHHHHHHHHH--HTCEE---EEEEGGGTCC-
T ss_pred HHHhccHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCceEEEECCCCCCHHHHHHHHHHH--hCCCe---EEEecchhhc-
Confidence 35688988888888776542110 01234566899999999999999999984 33332 3344332110
Q ss_pred HHHHHHHHHHhcCCCCCCCcHHH-HHHHHHHHhcCceEEEEEecCCC--------CC--cc----ChhHHHHhhhC--CC
Q 002308 222 FRIAKAMLEALTGSTSNLNALQS-LLISIDESIAGKRFLLVLDDVWD--------GD--YI----KWEPFYRCLKK--GL 284 (938)
Q Consensus 222 ~~~~~~i~~~l~~~~~~~~~~~~-~~~~l~~~l~~~~~LlVlDdv~~--------~~--~~----~~~~l~~~l~~--~~ 284 (938)
. ...+.+. +...+...-...+.++++|+++. .. .. ....++..+.. ..
T Consensus 245 -------------~--~~Ge~e~~ir~lF~~A~~~aP~IifiDEiD~i~~~R~~~~~~~~~~~~r~l~~lL~~ldg~~~~ 309 (428)
T 4b4t_K 245 -------------K--YLGEGPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGSDREVQRILIELLTQMDGFDQS 309 (428)
T ss_dssp -------------S--SCSHHHHHHHHHHHHHHHTCSEEEEEECTHHHHCSCSSSCSCCCCHHHHHHHHHHHHHHHSCSS
T ss_pred -------------c--ccchhHHHHHHHHHHHHHcCCCeeechhhhhhhccccCCCCCCChHHHHHHHHHHHHhhCCCCC
Confidence 0 0011111 11222222245789999999832 00 00 11223333332 23
Q ss_pred CCcEEEEEcCChhhhh-hh----cCCceEeCCCCCh-HHHHHHHHHhhcCCCCCchhhHHHHHHHHHHHhcCCC
Q 002308 285 HGSKILITTRKESIVS-MM----RSTDIISIEELAE-EECWVLFKRLAFFGRSTEECEKLEQIGQRIARKCKGL 352 (938)
Q Consensus 285 ~gs~ilvTtr~~~v~~-~~----~~~~~~~l~~L~~-~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~ 352 (938)
.+..||.||..++... .+ .-...+.+..++. ++...+|..+...... ....+ ...+++.+.|.
T Consensus 310 ~~v~vI~aTN~~~~LD~AllRpGRfd~~I~~p~lPd~~~R~~Il~~~~~~~~l-~~~~d----l~~lA~~t~G~ 378 (428)
T 4b4t_K 310 TNVKVIMATNRADTLDPALLRPGRLDRKIEFPSLRDRRERRLIFGTIASKMSL-APEAD----LDSLIIRNDSL 378 (428)
T ss_dssp CSEEEEEEESCSSSCCHHHHSSSSEEEEEECCSSCCHHHHHHHHHHHHHSSCB-CTTCC----HHHHHHHTTTC
T ss_pred CCEEEEEecCChhhcChhhhcCCcceEEEEcCCCCCHHHHHHHHHHHhcCCCC-CcccC----HHHHHHHCCCC
Confidence 4555666776554222 11 1134677876755 4455566665532221 11112 34667777664
No 222
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=97.56 E-value=6.8e-05 Score=69.04 Aligned_cols=87 Identities=15% Similarity=0.070 Sum_probs=51.2
Q ss_pred eEEEEEEccCCChHHHHHHHHhhhhhhhcccCeEEEEEeCCCCCHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHhcCc
Q 002308 177 LHIISIVGMGGIGKTTLAQLACNHVEVKREFDKTLWVCVSETFDEFRIAKAMLEALTGSTSNLNALQSLLISIDESIAGK 256 (938)
Q Consensus 177 ~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~ 256 (938)
...++|+|+.|+|||||++.++...... .+ .++++....-... .+..+
T Consensus 36 g~~~~l~G~~G~GKTtL~~~i~~~~~~~-g~-~~~~~~~~~~~~~------------------------------~~~~~ 83 (149)
T 2kjq_A 36 GQFIYVWGEEGAGKSHLLQAWVAQALEA-GK-NAAYIDAASMPLT------------------------------DAAFE 83 (149)
T ss_dssp CSEEEEESSSTTTTCHHHHHHHHHHHTT-TC-CEEEEETTTSCCC------------------------------GGGGG
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHhc-CC-cEEEEcHHHhhHH------------------------------HHHhC
Confidence 3578999999999999999999853221 11 2566665432211 01124
Q ss_pred eEEEEEecCCCCCccChhHHHHhhhCC-CCCc-EEEEEcCC
Q 002308 257 RFLLVLDDVWDGDYIKWEPFYRCLKKG-LHGS-KILITTRK 295 (938)
Q Consensus 257 ~~LlVlDdv~~~~~~~~~~l~~~l~~~-~~gs-~ilvTtr~ 295 (938)
.-++||||+...+...-+.+...+... ..|. +||+||+.
T Consensus 84 ~~lLilDE~~~~~~~~~~~l~~li~~~~~~g~~~iiits~~ 124 (149)
T 2kjq_A 84 AEYLAVDQVEKLGNEEQALLFSIFNRFRNSGKGFLLLGSEY 124 (149)
T ss_dssp CSEEEEESTTCCCSHHHHHHHHHHHHHHHHTCCEEEEEESS
T ss_pred CCEEEEeCccccChHHHHHHHHHHHHHHHcCCcEEEEECCC
Confidence 458899999764332223343433321 1233 48888874
No 223
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.55 E-value=3.5e-05 Score=72.09 Aligned_cols=85 Identities=8% Similarity=0.020 Sum_probs=41.9
Q ss_pred CceeEEeccCCCCCCCCchhhHHHHHhccCCCeeEEecCCCCCCcc-cCcccccc----CCCCeeeecCCc-ccc-cccc
Q 002308 538 KRIRSLLIEWPEFGHSSLNGEILEELFRESTSLRALDFPSFYLPLE-IPRNIEKL----VHLRYLNLSDQK-IKK-LPET 610 (938)
Q Consensus 538 ~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~n~~~~~-lp~~~~~l----~~L~~L~L~~~~-i~~-lp~~ 610 (938)
.+|+.|+++++.+.+..+ . .+..+++|+.|+|++|..++. --..++.+ ++|++|+|++|. |+. --..
T Consensus 61 ~~L~~LDLs~~~Itd~GL-----~-~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~ 134 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGF-----D-HMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIA 134 (176)
T ss_dssp CCEEEEEEESCCCCGGGG-----G-GGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHH
T ss_pred ceEeEEeCcCCCccHHHH-----H-HhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHH
Confidence 456667666665433221 1 135566666666666642222 11223332 346666666653 441 1123
Q ss_pred ccCCCCccEEEcCCCCCc
Q 002308 611 LCELYNLEKLDISGCSDL 628 (938)
Q Consensus 611 i~~l~~L~~L~l~~~~~l 628 (938)
+.++++|++|++++|..+
T Consensus 135 L~~~~~L~~L~L~~c~~I 152 (176)
T 3e4g_A 135 LHHFRNLKYLFLSDLPGV 152 (176)
T ss_dssp GGGCTTCCEEEEESCTTC
T ss_pred HhcCCCCCEEECCCCCCC
Confidence 445566666666665533
No 224
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=97.54 E-value=0.0016 Score=68.66 Aligned_cols=155 Identities=12% Similarity=0.143 Sum_probs=85.2
Q ss_pred CceecchhhHHHHHHHHhccCc--------ccCCCeEEEEEEccCCChHHHHHHHHhhhhhhhcccCeEEEEEeCCCCC-
Q 002308 150 EEICGRVGERNALLSMLLCESS--------EQQKGLHIISIVGMGGIGKTTLAQLACNHVEVKREFDKTLWVCVSETFD- 220 (938)
Q Consensus 150 ~~~vGr~~~~~~l~~~l~~~~~--------~~~~~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~- 220 (938)
..++|++..++.+...+...-. ........+.|+|++|+|||++|+.+++. ... ..+.++++...+
T Consensus 15 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~--l~~---~~~~i~~~~~~~~ 89 (310)
T 1ofh_A 15 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKL--ANA---PFIKVEATKFTEV 89 (310)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHTTSSCHHHHHHCCCCCEEEECCTTSSHHHHHHHHHHH--HTC---CEEEEEGGGGSSC
T ss_pred hhcCChHHHHHHHHHHHHHHHhhhhhcccccccCCCceEEEECCCCCCHHHHHHHHHHH--hCC---CEEEEcchhcccC
Confidence 4589999999998887754100 00113456889999999999999999884 322 234455433211
Q ss_pred ------HHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHhcCceEEEEEecCCCCCccC------------hhHHHHhhhC
Q 002308 221 ------EFRIAKAMLEALTGSTSNLNALQSLLISIDESIAGKRFLLVLDDVWDGDYIK------------WEPFYRCLKK 282 (938)
Q Consensus 221 ------~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~~~~------------~~~l~~~l~~ 282 (938)
....+..+.....+ .+.. .+.+.+|+||+++...... ...+...+..
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~-------------~~~~--~~~~~vl~iDEi~~l~~~~~~~~~~~~~~~~~~~Ll~~le~ 154 (310)
T 1ofh_A 90 GYVGKEVDSIIRDLTDSAGG-------------AIDA--VEQNGIVFIDEIDKICKKGEYSGADVSREGVQRDLLPLVEG 154 (310)
T ss_dssp CSGGGSTTHHHHHHHHTTTT-------------CHHH--HHHHCEEEEECGGGGSCCSSCCSSHHHHHHHHHHHHHHHHC
T ss_pred CccCccHHHHHHHHHHHhhH-------------HHhh--ccCCCEEEEEChhhcCccccccccchhHHHHHHHHHHHhcC
Confidence 11122222221100 0110 1235699999997644332 3445555543
Q ss_pred C----------CCCcEEEEEc----CChh-hhhh-hcC-CceEeCCCCChHHHHHHHHH
Q 002308 283 G----------LHGSKILITT----RKES-IVSM-MRS-TDIISIEELAEEECWVLFKR 324 (938)
Q Consensus 283 ~----------~~gs~ilvTt----r~~~-v~~~-~~~-~~~~~l~~L~~~~~~~lf~~ 324 (938)
. ..+..+|.|+ ..+. +... ... ...+.+.+++.++..+++..
T Consensus 155 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~l~~R~~~~i~~~~~~~~~~~~il~~ 213 (310)
T 1ofh_A 155 STVSTKHGMVKTDHILFIASGAFQVARPSDLIPELQGRLPIRVELTALSAADFERILTE 213 (310)
T ss_dssp CEEEETTEEEECTTCEEEEEECCSSSCGGGSCHHHHHTCCEEEECCCCCHHHHHHHHHS
T ss_pred CeEecccccccCCcEEEEEcCCcccCCcccCCHHHHhhCCceEEcCCcCHHHHHHHHHh
Confidence 2 1244455553 1221 1111 111 24689999999999998875
No 225
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.49 E-value=0.0023 Score=69.15 Aligned_cols=177 Identities=15% Similarity=0.097 Sum_probs=95.8
Q ss_pred CceecchhhHHHHHHHHhc----cC---cccCCCeEEEEEEccCCChHHHHHHHHhhhhhhhcccCeEEEEEeCCCCCHH
Q 002308 150 EEICGRVGERNALLSMLLC----ES---SEQQKGLHIISIVGMGGIGKTTLAQLACNHVEVKREFDKTLWVCVSETFDEF 222 (938)
Q Consensus 150 ~~~vGr~~~~~~l~~~l~~----~~---~~~~~~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~ 222 (938)
..+.|-++..++|.+.+.- ++ .-+-...+=|.++|++|+|||+||+++++. ....| +.+..+.
T Consensus 209 ~DIgGl~~~k~~L~e~V~~pl~~pe~f~~~Gi~pprGILLyGPPGTGKTlLAkAiA~e--~~~~f---i~vs~s~----- 278 (467)
T 4b4t_H 209 SDVGGCKDQIEKLREVVELPLLSPERFATLGIDPPKGILLYGPPGTGKTLCARAVANR--TDATF---IRVIGSE----- 278 (467)
T ss_dssp SSCTTCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCSEEEECSCTTSSHHHHHHHHHHH--HTCEE---EEEEGGG-----
T ss_pred HHhccHHHHHHHHHHHHHHHhcCHHHHHHCCCCCCCceEeeCCCCCcHHHHHHHHHhc--cCCCe---EEEEhHH-----
Confidence 4678888888888775432 10 001235667899999999999999999983 33333 3333332
Q ss_pred HHHHHHHHHhcCCCCCCCcHHHHH-HHHHHHhcCceEEEEEecCCCCC------cc--------ChhHHHHhhhCC--CC
Q 002308 223 RIAKAMLEALTGSTSNLNALQSLL-ISIDESIAGKRFLLVLDDVWDGD------YI--------KWEPFYRCLKKG--LH 285 (938)
Q Consensus 223 ~~~~~i~~~l~~~~~~~~~~~~~~-~~l~~~l~~~~~LlVlDdv~~~~------~~--------~~~~l~~~l~~~--~~ 285 (938)
+.... ..+.+... ..+...-...+.+|++|+++..- .. ....++..+... ..
T Consensus 279 ---------L~sk~--vGesek~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~ 347 (467)
T 4b4t_H 279 ---------LVQKY--VGEGARMVRELFEMARTKKACIIFFDEIDAVGGARFDDGAGGDNEVQRTMLELITQLDGFDPRG 347 (467)
T ss_dssp ---------GCCCS--SSHHHHHHHHHHHHHHHTCSEEEEEECCTTTSBCCSSSSCGGGGHHHHHHHHHHHHHHSSCCTT
T ss_pred ---------hhccc--CCHHHHHHHHHHHHHHhcCCceEeecccccccccccCcCCCccHHHHHHHHHHHHHhhccCCCC
Confidence 11000 11111112 22222234578999999985321 00 011222233322 23
Q ss_pred CcEEEEEcCChhhhhh-h----cCCceEeCCCCChHHHHHHHHHhhcCCCCCchhhHHHHHHHHHHHhcCCC
Q 002308 286 GSKILITTRKESIVSM-M----RSTDIISIEELAEEECWVLFKRLAFFGRSTEECEKLEQIGQRIARKCKGL 352 (938)
Q Consensus 286 gs~ilvTtr~~~v~~~-~----~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~ 352 (938)
+..||.||..++.... + .-...+.+..-+.++..++|+.++..-... ..-+ ...|++.+.|.
T Consensus 348 ~ViVIaATNrpd~LDpALlRpGRFD~~I~i~lPd~~~R~~Ilk~~l~~~~l~-~dvd----l~~LA~~T~Gf 414 (467)
T 4b4t_H 348 NIKVMFATNRPNTLDPALLRPGRIDRKVEFSLPDLEGRANIFRIHSKSMSVE-RGIR----WELISRLCPNS 414 (467)
T ss_dssp TEEEEEECSCTTSBCHHHHSTTTCCEEECCCCCCHHHHHHHHHHHHTTSCBC-SSCC----HHHHHHHCCSC
T ss_pred cEEEEeCCCCcccCChhhhccccccEEEEeCCcCHHHHHHHHHHHhcCCCCC-CCCC----HHHHHHHCCCC
Confidence 4455667765432221 1 224678888888888899998776432211 1112 34677777764
No 226
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.47 E-value=0.00065 Score=73.65 Aligned_cols=178 Identities=13% Similarity=0.094 Sum_probs=94.7
Q ss_pred CCceecchhhHHHHHHHHhc----cC---cccCCCeEEEEEEccCCChHHHHHHHHhhhhhhhcccCeEEEEEeCCCCCH
Q 002308 149 EEEICGRVGERNALLSMLLC----ES---SEQQKGLHIISIVGMGGIGKTTLAQLACNHVEVKREFDKTLWVCVSETFDE 221 (938)
Q Consensus 149 ~~~~vGr~~~~~~l~~~l~~----~~---~~~~~~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~ 221 (938)
-+.+.|-+...++|.+.+.- ++ .-+-..++-|.+||++|+|||.+|+++++. ....| +.+..+.
T Consensus 180 ~~digGl~~~k~~l~e~v~~pl~~pe~f~~~g~~~prGvLLyGPPGTGKTllAkAiA~e--~~~~f---~~v~~s~---- 250 (434)
T 4b4t_M 180 YSDVGGLDKQIEELVEAIVLPMKRADKFKDMGIRAPKGALMYGPPGTGKTLLARACAAQ--TNATF---LKLAAPQ---- 250 (434)
T ss_dssp GGGSCSCHHHHHHHHHHTHHHHHCSHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHH--HTCEE---EEEEGGG----
T ss_pred hHhcCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeeEEECcCCCCHHHHHHHHHHH--hCCCE---EEEehhh----
Confidence 35688988888888775432 11 001234677899999999999999999984 33332 3333322
Q ss_pred HHHHHHHHHHhcCCCCCCCcHHHHHHHHH-HHhcCceEEEEEecCCCC-------Ccc---C----hhHHHHhhhCC--C
Q 002308 222 FRIAKAMLEALTGSTSNLNALQSLLISID-ESIAGKRFLLVLDDVWDG-------DYI---K----WEPFYRCLKKG--L 284 (938)
Q Consensus 222 ~~~~~~i~~~l~~~~~~~~~~~~~~~~l~-~~l~~~~~LlVlDdv~~~-------~~~---~----~~~l~~~l~~~--~ 284 (938)
+.... ....+...+.+. ..-...+.+|++|+++.. ... . ...++..+... .
T Consensus 251 ----------l~~~~--vGese~~ir~lF~~A~~~aP~IifiDEiDal~~~R~~~~~~~~~~~~~~~~~lL~~ldg~~~~ 318 (434)
T 4b4t_M 251 ----------LVQMY--IGEGAKLVRDAFALAKEKAPTIIFIDELDAIGTKRFDSEKSGDREVQRTMLELLNQLDGFSSD 318 (434)
T ss_dssp ----------GCSSC--SSHHHHHHHHHHHHHHHHCSEEEEEECTHHHHCCCSSGGGGTTHHHHHHHHHHHHHHTTSCSS
T ss_pred ----------hhhcc--cchHHHHHHHHHHHHHhcCCeEEeecchhhhhhccCCCCCCCchHHHHHHHHHHHHhhccCCC
Confidence 11000 111111222221 122346899999998421 000 0 11233333322 2
Q ss_pred CCcEEEEEcCChhhhhh-h----cCCceEeCCCCChHHHHHHHHHhhcCCCCCchhhHHHHHHHHHHHhcCCC
Q 002308 285 HGSKILITTRKESIVSM-M----RSTDIISIEELAEEECWVLFKRLAFFGRSTEECEKLEQIGQRIARKCKGL 352 (938)
Q Consensus 285 ~gs~ilvTtr~~~v~~~-~----~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~ 352 (938)
.+..||.||..++.... + .-...+.++.-+.++..++|..+...-... ..-+ ...|++.+.|.
T Consensus 319 ~~ViVIaaTNrp~~LD~AllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~~-~dvd----l~~lA~~t~G~ 386 (434)
T 4b4t_M 319 DRVKVLAATNRVDVLDPALLRSGRLDRKIEFPLPSEDSRAQILQIHSRKMTTD-DDIN----WQELARSTDEF 386 (434)
T ss_dssp CSSEEEEECSSCCCCCTTTCSTTSEEEEEECCCCCHHHHHHHHHHHHHHSCBC-SCCC----HHHHHHHCSSC
T ss_pred CCEEEEEeCCCchhcCHhHhcCCceeEEEEeCCcCHHHHHHHHHHHhcCCCCC-CcCC----HHHHHHhCCCC
Confidence 34456667766543322 1 124578888888888888887765322111 1112 35677777664
No 227
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=97.47 E-value=0.00067 Score=81.27 Aligned_cols=157 Identities=17% Similarity=0.166 Sum_probs=86.7
Q ss_pred CceecchhhHHHHHHHHhccCcccCCCeEEEEEEccCCChHHHHHHHHhhhhhhhc----ccCeEEEE-EeCCCCCHHHH
Q 002308 150 EEICGRVGERNALLSMLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNHVEVKR----EFDKTLWV-CVSETFDEFRI 224 (938)
Q Consensus 150 ~~~vGr~~~~~~l~~~l~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~----~f~~~~wv-~~~~~~~~~~~ 224 (938)
+.++||+.+++++.+.+... ...-+.|+|++|+|||++|+.++....... .....+|. ..+.-
T Consensus 186 d~~iGr~~~i~~l~~~l~~~------~~~~vlL~G~~GtGKT~la~~la~~l~~~~v~~~~~~~~~~~~~~~~l------ 253 (758)
T 1r6b_X 186 DPLIGREKELERAIQVLCRR------RKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDIGSL------ 253 (758)
T ss_dssp CCCCSCHHHHHHHHHHHTSS------SSCEEEEECCTTSSHHHHHHHHHHHHHHTCSCGGGTTCEEEECCCC--------
T ss_pred CCccCCHHHHHHHHHHHhcc------CCCCeEEEcCCCCCHHHHHHHHHHHHHhCCCChhhcCCEEEEEcHHHH------
Confidence 46899999999999999753 234568999999999999999998421110 11222222 11110
Q ss_pred HHHHHHHhcCCCCCCCcHHHHHHHHHHHh-cCceEEEEEecCCCCCc-----cChhHHHHhhhC--CCCCcEEEEEcCCh
Q 002308 225 AKAMLEALTGSTSNLNALQSLLISIDESI-AGKRFLLVLDDVWDGDY-----IKWEPFYRCLKK--GLHGSKILITTRKE 296 (938)
Q Consensus 225 ~~~i~~~l~~~~~~~~~~~~~~~~l~~~l-~~~~~LlVlDdv~~~~~-----~~~~~l~~~l~~--~~~gs~ilvTtr~~ 296 (938)
+.+ .......++....+.+.+ ..++.+|++|++..... ..-......+.. ...+..+|.+|...
T Consensus 254 -------~~~-~~~~g~~e~~l~~~~~~~~~~~~~iL~IDEi~~l~~~~~~~~~~~~~~~~L~~~l~~~~~~~I~at~~~ 325 (758)
T 1r6b_X 254 -------LAG-TKYRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLSSGKIRVIGSTTYQ 325 (758)
T ss_dssp --------CC-CCCSSCHHHHHHHHHHHHSSSSCEEEEETTTTTTTTSCCSSSCHHHHHHHHSSCSSSCCCEEEEEECHH
T ss_pred -------hcc-ccccchHHHHHHHHHHHHHhcCCeEEEEechHHHhhcCCCCcchHHHHHHHHHHHhCCCeEEEEEeCch
Confidence 000 111222333333333333 34578999999975310 001112222222 12344566666544
Q ss_pred hhhhh-------hcCCceEeCCCCChHHHHHHHHHhh
Q 002308 297 SIVSM-------MRSTDIISIEELAEEECWVLFKRLA 326 (938)
Q Consensus 297 ~v~~~-------~~~~~~~~l~~L~~~~~~~lf~~~~ 326 (938)
..... ......+.+.+.+.++..+++...+
T Consensus 326 ~~~~~~~~d~aL~~Rf~~i~v~~p~~~e~~~il~~l~ 362 (758)
T 1r6b_X 326 EFSNIFEKDRALARRFQKIDITEPSIEETVQIINGLK 362 (758)
T ss_dssp HHHCCCCCTTSSGGGEEEEECCCCCHHHHHHHHHHHH
T ss_pred HHhhhhhcCHHHHhCceEEEcCCCCHHHHHHHHHHHH
Confidence 32111 1112368899999999988887654
No 228
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=97.43 E-value=0.00078 Score=80.53 Aligned_cols=156 Identities=13% Similarity=0.198 Sum_probs=90.8
Q ss_pred CceecchhhHHHHHHHHhccCcc---cCCCeEEEEEEccCCChHHHHHHHHhhhhhhhcccCeEEEEEeCCCCCHHHHHH
Q 002308 150 EEICGRVGERNALLSMLLCESSE---QQKGLHIISIVGMGGIGKTTLAQLACNHVEVKREFDKTLWVCVSETFDEFRIAK 226 (938)
Q Consensus 150 ~~~vGr~~~~~~l~~~l~~~~~~---~~~~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~ 226 (938)
..++|.+..++.+...+...... .......+.++|++|+|||++|+.+++. ....-...+.++++...+.
T Consensus 491 ~~viGq~~a~~~l~~~i~~~~~~~~~~~~p~~~~Ll~Gp~GtGKT~lA~ala~~--l~~~~~~~i~i~~s~~~~~----- 563 (758)
T 3pxi_A 491 SRVIGQDEAVVAVAKAVRRARAGLKDPKRPIGSFIFLGPTGVGKTELARALAES--IFGDEESMIRIDMSEYMEK----- 563 (758)
T ss_dssp TTSCSCHHHHHHHHHHHHHHTTTCSCTTSCSEEEEEESCTTSSHHHHHHHHHHH--HHSCTTCEEEEEGGGGCSS-----
T ss_pred CcCcChHHHHHHHHHHHHHHHcccCCCCCCceEEEEECCCCCCHHHHHHHHHHH--hcCCCcceEEEechhcccc-----
Confidence 45899999998888888743311 1223457999999999999999999984 2222234556665542110
Q ss_pred HHHHHhcCCCCCCCcHHHHHHHHHHHhcCceEEEEEecCCCCCccChhHHHHhhhCCC-----------CCcEEEEEcCC
Q 002308 227 AMLEALTGSTSNLNALQSLLISIDESIAGKRFLLVLDDVWDGDYIKWEPFYRCLKKGL-----------HGSKILITTRK 295 (938)
Q Consensus 227 ~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~~~~~~~l~~~l~~~~-----------~gs~ilvTtr~ 295 (938)
.... .......++ ....-+|+||++..........+...+..+. ...+||+||..
T Consensus 564 ---------~~~~--~~~l~~~~~---~~~~~vl~lDEi~~~~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~ttn~ 629 (758)
T 3pxi_A 564 ---------HSTS--GGQLTEKVR---RKPYSVVLLDAIEKAHPDVFNILLQVLEDGRLTDSKGRTVDFRNTILIMTSNV 629 (758)
T ss_dssp ---------CCCC-----CHHHHH---HCSSSEEEEECGGGSCHHHHHHHHHHHHHSBCC-----CCBCTTCEEEEEESS
T ss_pred ---------cccc--cchhhHHHH---hCCCeEEEEeCccccCHHHHHHHHHHhccCeEEcCCCCEeccCCeEEEEeCCC
Confidence 0000 011111111 1233489999998776655666776665421 34578888873
Q ss_pred hh-----h----hhhh-----cC-CceEeCCCCChHHHHHHHHHhh
Q 002308 296 ES-----I----VSMM-----RS-TDIISIEELAEEECWVLFKRLA 326 (938)
Q Consensus 296 ~~-----v----~~~~-----~~-~~~~~l~~L~~~~~~~lf~~~~ 326 (938)
.. + .... .. ...+.+.+++.++..+++...+
T Consensus 630 ~~~~~~~~~~~~~~~f~p~l~~Rl~~~i~~~~l~~~~~~~i~~~~l 675 (758)
T 3pxi_A 630 GASEKDKVMGELKRAFRPEFINRIDEIIVFHSLEKKHLTEIVSLMS 675 (758)
T ss_dssp STTCCHHHHHHHHHHSCHHHHTTSSEEEECC--CHHHHHHHHHHHH
T ss_pred ChhhHHHHHHHHHhhCCHHHHhhCCeEEecCCCCHHHHHHHHHHHH
Confidence 11 0 0001 11 2478889999888888776643
No 229
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=97.40 E-value=0.0034 Score=69.28 Aligned_cols=180 Identities=13% Similarity=0.072 Sum_probs=96.8
Q ss_pred CCceecchhhHHHHHHHHhccCcc------cCCCeEEEEEEccCCChHHHHHHHHhhhhhhhcccCeEEEEEeCCCCCHH
Q 002308 149 EEEICGRVGERNALLSMLLCESSE------QQKGLHIISIVGMGGIGKTTLAQLACNHVEVKREFDKTLWVCVSETFDEF 222 (938)
Q Consensus 149 ~~~~vGr~~~~~~l~~~l~~~~~~------~~~~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~ 222 (938)
-..++|.+..++++.+....-... +....+-|.|+|++|+|||+||+.++.. .... .+.++++.-...
T Consensus 15 f~di~G~~~~~~~l~e~v~~l~~~~~~~~~g~~~p~gvLL~GppGtGKT~Laraia~~--~~~~---f~~is~~~~~~~- 88 (476)
T 2ce7_A 15 FKDVGGAEEAIEELKEVVEFLKDPSKFNRIGARMPKGILLVGPPGTGKTLLARAVAGE--ANVP---FFHISGSDFVEL- 88 (476)
T ss_dssp GGGCCSCHHHHHHHHHHHHHHHCTHHHHTTTCCCCSEEEEECCTTSSHHHHHHHHHHH--HTCC---EEEEEGGGTTTC-
T ss_pred HHHhCCcHHHHHHHHHHHHHhhChHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHH--cCCC---eeeCCHHHHHHH-
Confidence 356899988777766654321100 0112234889999999999999999983 3222 233443321110
Q ss_pred HHHHHHHHHhcCCCCCCCcHHHHHHHHHHHhcCceEEEEEecCCCCCc--------------cChhHHHHhhhC--CCCC
Q 002308 223 RIAKAMLEALTGSTSNLNALQSLLISIDESIAGKRFLLVLDDVWDGDY--------------IKWEPFYRCLKK--GLHG 286 (938)
Q Consensus 223 ~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~~--------------~~~~~l~~~l~~--~~~g 286 (938)
+ . ..........+.......+.+|+||+++.... .....+...+.. ...+
T Consensus 89 ---------~----~-g~~~~~~r~lf~~A~~~~p~ILfIDEid~l~~~r~~~~~g~~~~~~~~l~~LL~~ld~~~~~~~ 154 (476)
T 2ce7_A 89 ---------F----V-GVGAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFDSKEG 154 (476)
T ss_dssp ---------C----T-THHHHHHHHHHHHHHHTCSEEEEEETGGGTCCC---------CHHHHHHHHHHHHHHHSCGGGT
T ss_pred ---------H----h-cccHHHHHHHHHHHHhcCCCEEEEechhhhhhhcccccCcCcHHHHHHHHHHHHHHhccCCCCC
Confidence 0 0 00111222334444456789999999954211 012233333321 1245
Q ss_pred cEEEEEcCChhhhhh--hc---CCceEeCCCCChHHHHHHHHHhhcCCCCCchhhHHHHHHHHHHHhcCCCh
Q 002308 287 SKILITTRKESIVSM--MR---STDIISIEELAEEECWVLFKRLAFFGRSTEECEKLEQIGQRIARKCKGLP 353 (938)
Q Consensus 287 s~ilvTtr~~~v~~~--~~---~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~P 353 (938)
..||.||..++.... .. -...+.+...+.++..+++..++..... ....+ ...+++.+.|..
T Consensus 155 viVIaaTn~~~~Ld~allR~gRFd~~i~i~~Pd~~~R~~Il~~~~~~~~l-~~~v~----l~~la~~t~G~s 221 (476)
T 2ce7_A 155 IIVMAATNRPDILDPALLRPGRFDKKIVVDPPDMLGRKKILEIHTRNKPL-AEDVN----LEIIAKRTPGFV 221 (476)
T ss_dssp EEEEEEESCGGGSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCB-CTTCC----HHHHHHTCTTCC
T ss_pred EEEEEecCChhhhchhhcccCcceeEeecCCCCHHHHHHHHHHHHHhCCC-cchhh----HHHHHHhcCCCc
Confidence 567777766543321 11 1337888888888888888877643221 11111 345777888876
No 230
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.38 E-value=0.0018 Score=69.33 Aligned_cols=177 Identities=16% Similarity=0.075 Sum_probs=94.4
Q ss_pred CceecchhhHHHHHHHHhccC---c----ccCCCeEEEEEEccCCChHHHHHHHHhhhhhhhcccCeEEEEEeCCCCCHH
Q 002308 150 EEICGRVGERNALLSMLLCES---S----EQQKGLHIISIVGMGGIGKTTLAQLACNHVEVKREFDKTLWVCVSETFDEF 222 (938)
Q Consensus 150 ~~~vGr~~~~~~l~~~l~~~~---~----~~~~~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~ 222 (938)
+++.|-++..++|.+.+.-+- . -+-...+=|.++|++|+|||.||+++++. ....| +.+..+.
T Consensus 182 ~DIgGld~~k~~L~e~v~~Pl~~pe~f~~~Gi~~prGvLLyGPPGTGKTlLAkAiA~e--~~~~f---i~v~~s~----- 251 (437)
T 4b4t_I 182 SDIGGLESQIQEIKESVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLAKAVANQ--TSATF---LRIVGSE----- 251 (437)
T ss_dssp GGTCSCHHHHHHHHHHHHHHHHCCHHHHHHTCCCCSEEEEESSTTTTHHHHHHHHHHH--HTCEE---EEEESGG-----
T ss_pred eecCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCCCceECCCCchHHHHHHHHHHH--hCCCE---EEEEHHH-----
Confidence 457788888887777654210 0 01234567899999999999999999984 33332 2333222
Q ss_pred HHHHHHHHHhcCCCCCCCcHHHHHHHH-HHHhcCceEEEEEecCCCCC-------c-c------ChhHHHHhhhC--CCC
Q 002308 223 RIAKAMLEALTGSTSNLNALQSLLISI-DESIAGKRFLLVLDDVWDGD-------Y-I------KWEPFYRCLKK--GLH 285 (938)
Q Consensus 223 ~~~~~i~~~l~~~~~~~~~~~~~~~~l-~~~l~~~~~LlVlDdv~~~~-------~-~------~~~~l~~~l~~--~~~ 285 (938)
+... ...+.+...+.+ ...-...+.+|++|+++..- . . ....++..+.. ...
T Consensus 252 ---------l~sk--~vGesek~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~LL~~lDg~~~~~ 320 (437)
T 4b4t_I 252 ---------LIQK--YLGDGPRLCRQIFKVAGENAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDDRG 320 (437)
T ss_dssp ---------GCCS--SSSHHHHHHHHHHHHHHHTCSEEEEEEEESSSSCCCSCSSCSSCCHHHHHHHHHHHHHHHCCCSS
T ss_pred ---------hhhc--cCchHHHHHHHHHHHHHhcCCcEEEEehhhhhcccCCCCCCCccHHHHHHHHHHHHHhhCcCCCC
Confidence 1100 011112222222 22223578999999985310 0 0 01122222322 223
Q ss_pred CcEEEEEcCChhhhhh-h----cCCceEeCCCCChHHHHHHHHHhhcCCCCCchhhHHHHHHHHHHHhcCCC
Q 002308 286 GSKILITTRKESIVSM-M----RSTDIISIEELAEEECWVLFKRLAFFGRSTEECEKLEQIGQRIARKCKGL 352 (938)
Q Consensus 286 gs~ilvTtr~~~v~~~-~----~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~ 352 (938)
+..||.||..++.... + .-...+.+..-+.++..++|..+...-.. ...-+ ...|++.+.|.
T Consensus 321 ~ViVIaATNrpd~LDpALlRpGRfD~~I~v~lPd~~~R~~Il~~~l~~~~l-~~dvd----l~~LA~~T~Gf 387 (437)
T 4b4t_I 321 DVKVIMATNKIETLDPALIRPGRIDRKILFENPDLSTKKKILGIHTSKMNL-SEDVN----LETLVTTKDDL 387 (437)
T ss_dssp SEEEEEEESCSTTCCTTSSCTTTEEEEECCCCCCHHHHHHHHHHHHTTSCB-CSCCC----HHHHHHHCCSC
T ss_pred CEEEEEeCCChhhcCHHHhcCCceeEEEEcCCcCHHHHHHHHHHHhcCCCC-CCcCC----HHHHHHhCCCC
Confidence 4456667766543332 1 11346788888888888899877643221 11112 34667777664
No 231
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=97.36 E-value=0.00051 Score=82.15 Aligned_cols=147 Identities=16% Similarity=0.169 Sum_probs=80.1
Q ss_pred CceecchhhHHHHHHHHhccCcccCCCeEEEEEEccCCChHHHHHHHHhhhhhhhc---c-cCe-EEEEEeCCCCCHHHH
Q 002308 150 EEICGRVGERNALLSMLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNHVEVKR---E-FDK-TLWVCVSETFDEFRI 224 (938)
Q Consensus 150 ~~~vGr~~~~~~l~~~l~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~---~-f~~-~~wv~~~~~~~~~~~ 224 (938)
+.++||+.+++++...+.... ..-+.++|++|+|||++|+.+++...-.. . ... .+.++.
T Consensus 180 d~iiG~~~~i~~l~~~l~~~~------~~~vLL~G~pGtGKT~la~~la~~l~~~~~p~~l~~~~~~~~~~--------- 244 (758)
T 3pxi_A 180 DPVIGRSKEIQRVIEVLSRRT------KNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDM--------- 244 (758)
T ss_dssp CCCCCCHHHHHHHHHHHHCSS------SCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC-----------
T ss_pred CCccCchHHHHHHHHHHhCCC------CCCeEEECCCCCCHHHHHHHHHHHHhcCCCChhhcCCeEEEecc---------
Confidence 469999999999999997532 23478999999999999999988421000 0 011 111111
Q ss_pred HHHHHHHhcCCCCCCCcHHHHHHHHHHHhcCceEEEEEecCCCCCccChhHHHHhhhCCCCCcEEEEEcCChhhhhh---
Q 002308 225 AKAMLEALTGSTSNLNALQSLLISIDESIAGKRFLLVLDDVWDGDYIKWEPFYRCLKKGLHGSKILITTRKESIVSM--- 301 (938)
Q Consensus 225 ~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtr~~~v~~~--- 301 (938)
.....+. -..... ..+......++.+|++|.- . .....+...+. ....++|.||........
T Consensus 245 ----g~~~~G~--~e~~l~---~~~~~~~~~~~~iLfiD~~--~--~~~~~L~~~l~--~~~v~~I~at~~~~~~~~~~~ 309 (758)
T 3pxi_A 245 ----GTKYRGE--FEDRLK---KVMDEIRQAGNIILFIDAA--I--DASNILKPSLA--RGELQCIGATTLDEYRKYIEK 309 (758)
T ss_dssp --------------CTTHH---HHHHHHHTCCCCEEEECC------------CCCTT--SSSCEEEEECCTTTTHHHHTT
T ss_pred ----cccccch--HHHHHH---HHHHHHHhcCCEEEEEcCc--h--hHHHHHHHHHh--cCCEEEEeCCChHHHHHHhhc
Confidence 0000000 011122 2233333467789999921 1 11122222232 234556666655442111
Q ss_pred ----hcCCceEeCCCCChHHHHHHHHHhh
Q 002308 302 ----MRSTDIISIEELAEEECWVLFKRLA 326 (938)
Q Consensus 302 ----~~~~~~~~l~~L~~~~~~~lf~~~~ 326 (938)
......+.+...+.++..+++....
T Consensus 310 d~al~rRf~~i~v~~p~~~~~~~il~~~~ 338 (758)
T 3pxi_A 310 DAALERRFQPIQVDQPSVDESIQILQGLR 338 (758)
T ss_dssp CSHHHHSEEEEECCCCCHHHHHHHHHHTT
T ss_pred cHHHHhhCcEEEeCCCCHHHHHHHHHHHH
Confidence 1122579999999999999998754
No 232
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=97.29 E-value=0.00015 Score=74.79 Aligned_cols=159 Identities=13% Similarity=0.106 Sum_probs=82.2
Q ss_pred CCceecchhhHHHHHHHHhccCcc------cCCCeEEEEEEccCCChHHHHHHHHhhhhhhhcccCeEEEEEeCCCCCHH
Q 002308 149 EEEICGRVGERNALLSMLLCESSE------QQKGLHIISIVGMGGIGKTTLAQLACNHVEVKREFDKTLWVCVSETFDEF 222 (938)
Q Consensus 149 ~~~~vGr~~~~~~l~~~l~~~~~~------~~~~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~ 222 (938)
-..++|.+..++.+.+.+..-... +....+-+.|+|++|+|||++|+.+++. ....|- .+..+.-.
T Consensus 10 ~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~--~~~~~~---~v~~~~~~--- 81 (268)
T 2r62_A 10 FKDMAGNEEAKEEVVEIVDFLKYPERYANLGAKIPKGVLLVGPPGTGKTLLAKAVAGE--AHVPFF---SMGGSSFI--- 81 (268)
T ss_dssp STTSSSCTTTHHHHHHHHHHHHCHHHHHHHSCCCCSCCCCBCSSCSSHHHHHHHHHHH--HTCCCC---CCCSCTTT---
T ss_pred HHHhCCcHHHHHHHHHHHHHHHChHHHHHCCCCCCceEEEECCCCCcHHHHHHHHHHH--hCCCEE---EechHHHH---
Confidence 356899998888877765421000 0112233789999999999999999984 332321 11211100
Q ss_pred HHHHHHHHHhcCCCCCCCcHHHHHHHHHHHhcCceEEEEEecCCCCCc---------------cChhHHHHhhhCC---C
Q 002308 223 RIAKAMLEALTGSTSNLNALQSLLISIDESIAGKRFLLVLDDVWDGDY---------------IKWEPFYRCLKKG---L 284 (938)
Q Consensus 223 ~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~~---------------~~~~~l~~~l~~~---~ 284 (938)
..+.+.. ....... +......++.+|++|+++.... .....+...+... .
T Consensus 82 -------~~~~~~~--~~~~~~~---~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~ 149 (268)
T 2r62_A 82 -------EMFVGLG--ASRVRDL---FETAKKQAPSIIFIDEIDAIGKSRAAGGVVSGNDEREQTLNQLLAEMDGFGSEN 149 (268)
T ss_dssp -------TSCSSSC--SSSSSTT---HHHHHHSCSCEEEESCGGGTTC----------CCCSCSSTTTTTTTTTCSSCSC
T ss_pred -------HhhcchH--HHHHHHH---HHHHHhcCCeEEEEeChhhhcccccccccCCCchhHHHHHHHHHHHhhCcccCC
Confidence 0011100 1111111 2222234567999999954211 1122233333221 1
Q ss_pred CCcEEEEEcCChhhhh-hh----cCCceEeCCCCChHHHHHHHHHhhc
Q 002308 285 HGSKILITTRKESIVS-MM----RSTDIISIEELAEEECWVLFKRLAF 327 (938)
Q Consensus 285 ~gs~ilvTtr~~~v~~-~~----~~~~~~~l~~L~~~~~~~lf~~~~~ 327 (938)
....||.||....... .. .-...+.+...+.++..+++...+.
T Consensus 150 ~~v~vi~ttn~~~~ld~~l~r~~Rf~~~i~i~~p~~~~r~~il~~~~~ 197 (268)
T 2r62_A 150 APVIVLAATNRPEILDPALMRPGRFDRQVLVDKPDFNGRVEILKVHIK 197 (268)
T ss_dssp SCCEEEECBSCCTTSCGGGGSSSSSCCCCBCCCCCTTTHHHHHHHHTS
T ss_pred CCEEEEEecCCchhcCHhHcCCCCCCeEEEecCcCHHHHHHHHHHHHh
Confidence 2245666766553211 11 1134678888888888888877653
No 233
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=97.26 E-value=0.0019 Score=70.40 Aligned_cols=94 Identities=15% Similarity=-0.005 Sum_probs=60.2
Q ss_pred hccCCCcCCceEEEEecCCCCCCCCCccchHHHHhhCCCCCCCCeEEEeeecCCCCCCCchhccCCCCEEEEecCCCCCc
Q 002308 717 ELDKKKYLSRLRLEFDKKGGGGGRRKNEDDQLLLEALQPPLNLKELEIHYYGGNTVFPSWMASLTNLKSLDLCFCENCEQ 796 (938)
Q Consensus 717 ~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~ 796 (938)
.+..+..|+.+.+..+ +.. .-...+..+.+|+.+.+..+ +...-...|..+++|+.+.+.++.+...
T Consensus 235 ~f~~~~~L~~i~lp~~-v~~-----------I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~i~l~~~~i~~I 301 (379)
T 4h09_A 235 AFYGMKALDEIAIPKN-VTS-----------IGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCSNLTKVVMDNSAIETL 301 (379)
T ss_dssp TTTTCSSCCEEEECTT-CCE-----------ECTTTTTTCTTCCEEEECCC-CSEECTTTTTTCTTCCEEEECCTTCCEE
T ss_pred cccCCccceEEEcCCC-ccE-----------eCccccceeehhcccccccc-ceecccccccccccccccccccccccee
Confidence 4566777887777543 111 01235667788888888643 3331234566889999999987754433
Q ss_pred CCC-CCCCCccceeecccccCceEeCcccc
Q 002308 797 LPP-LGKLPSLEQLFISYMSSVKRVGDEFL 825 (938)
Q Consensus 797 l~~-l~~l~~L~~L~L~~~~~l~~~~~~~~ 825 (938)
-.. +.+|.+|+.+.|..+ ++.++...+
T Consensus 302 ~~~aF~~c~~L~~i~lp~~--l~~I~~~aF 329 (379)
T 4h09_A 302 EPRVFMDCVKLSSVTLPTA--LKTIQVYAF 329 (379)
T ss_dssp CTTTTTTCTTCCEEECCTT--CCEECTTTT
T ss_pred hhhhhcCCCCCCEEEcCcc--ccEEHHHHh
Confidence 333 889999999998653 777766543
No 234
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=97.17 E-value=0.0004 Score=72.72 Aligned_cols=55 Identities=20% Similarity=0.166 Sum_probs=34.4
Q ss_pred hhHHHHHHHHhccCcccCCCeEEEEEEccCCChHHHHHHHHhhhhhhhcccCeEEEEEe
Q 002308 157 GERNALLSMLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNHVEVKREFDKTLWVCV 215 (938)
Q Consensus 157 ~~~~~l~~~l~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~ 215 (938)
..++.+.+++..... .....+.|+|++|+|||+||..+++....... ..++++++
T Consensus 135 ~~~~~~~~~i~~~~~---~~~~~lll~G~~GtGKT~La~aia~~~~~~~g-~~v~~~~~ 189 (308)
T 2qgz_A 135 EAFSAILDFVEQYPS---AEQKGLYLYGDMGIGKSYLLAAMAHELSEKKG-VSTTLLHF 189 (308)
T ss_dssp HHHHHHHHHHHHCSC---SSCCEEEEECSTTSSHHHHHHHHHHHHHHHSC-CCEEEEEH
T ss_pred HHHHHHHHHHHhccc---cCCceEEEECCCCCCHHHHHHHHHHHHHHhcC-CcEEEEEH
Confidence 344455556553221 12467899999999999999999985321222 34556654
No 235
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=97.13 E-value=0.0016 Score=78.82 Aligned_cols=135 Identities=13% Similarity=0.225 Sum_probs=74.0
Q ss_pred ceecchhhHHHHHHHHhccCc---ccCCCeEEEEEEccCCChHHHHHHHHhhhhhhhcccCeEEEEEeCCCCCHHHHHHH
Q 002308 151 EICGRVGERNALLSMLLCESS---EQQKGLHIISIVGMGGIGKTTLAQLACNHVEVKREFDKTLWVCVSETFDEFRIAKA 227 (938)
Q Consensus 151 ~~vGr~~~~~~l~~~l~~~~~---~~~~~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~ 227 (938)
.++|.+..++.+...+..... +.......+.|+|++|+|||++|+.+++. ....-...+.++++......
T Consensus 559 ~viG~~~a~~~l~~~i~~~~~g~~~~~~p~~~vLl~Gp~GtGKT~lA~~la~~--~~~~~~~~i~i~~~~~~~~~----- 631 (854)
T 1qvr_A 559 RVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAAT--LFDTEEAMIRIDMTEYMEKH----- 631 (854)
T ss_dssp HSCSCHHHHHHHHHHHHHHGGGCSCSSSCSEEEEEBSCSSSSHHHHHHHHHHH--HHSSGGGEEEECTTTCCSSG-----
T ss_pred ccCCcHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCCHHHHHHHHHHH--hcCCCCcEEEEechhccchh-----
Confidence 579999998888888764321 01223468999999999999999999884 21111233455554322210
Q ss_pred HHHHhcCCCCC---CCcHHHHHHHHHHHhcCceEEEEEecCCCCCccChhHHHHhhhCCC-----------CCcEEEEEc
Q 002308 228 MLEALTGSTSN---LNALQSLLISIDESIAGKRFLLVLDDVWDGDYIKWEPFYRCLKKGL-----------HGSKILITT 293 (938)
Q Consensus 228 i~~~l~~~~~~---~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~~~~~~~l~~~l~~~~-----------~gs~ilvTt 293 (938)
....+.+.... ..........+. ....-+|+||++..........+...+..+. .+..||+||
T Consensus 632 ~~s~l~g~~~~~~G~~~~g~l~~~~~---~~~~~vl~lDEi~~l~~~~~~~Ll~~l~~~~~~~~~g~~vd~~~~iiI~ts 708 (854)
T 1qvr_A 632 AVSRLIGAPPGYVGYEEGGQLTEAVR---RRPYSVILFDEIEKAHPDVFNILLQILDDGRLTDSHGRTVDFRNTVIILTS 708 (854)
T ss_dssp GGGGC--------------CHHHHHH---HCSSEEEEESSGGGSCHHHHHHHHHHHTTTEECCSSSCCEECTTEEEEEEC
T ss_pred HHHHHcCCCCCCcCccccchHHHHHH---hCCCeEEEEecccccCHHHHHHHHHHhccCceECCCCCEeccCCeEEEEec
Confidence 00111111000 000011112222 1334689999998776555666777766432 244477777
Q ss_pred CC
Q 002308 294 RK 295 (938)
Q Consensus 294 r~ 295 (938)
..
T Consensus 709 n~ 710 (854)
T 1qvr_A 709 NL 710 (854)
T ss_dssp CT
T ss_pred Cc
Confidence 64
No 236
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=97.12 E-value=0.0013 Score=78.64 Aligned_cols=135 Identities=15% Similarity=0.207 Sum_probs=74.5
Q ss_pred CceecchhhHHHHHHHHhccCc---ccCCCeEEEEEEccCCChHHHHHHHHhhhhhhhcccCeEEEEEeCCCCCHHHHHH
Q 002308 150 EEICGRVGERNALLSMLLCESS---EQQKGLHIISIVGMGGIGKTTLAQLACNHVEVKREFDKTLWVCVSETFDEFRIAK 226 (938)
Q Consensus 150 ~~~vGr~~~~~~l~~~l~~~~~---~~~~~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~ 226 (938)
..++|.+..++.+...+..... ........+.++|++|+|||++|+.+++. .. ...+.++++.......
T Consensus 458 ~~v~g~~~~~~~l~~~i~~~~~g~~~~~~p~~~~ll~G~~GtGKT~la~~la~~--l~---~~~~~i~~s~~~~~~~--- 529 (758)
T 1r6b_X 458 MLVFGQDKAIEALTEAIKMARAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKA--LG---IELLRFDMSEYMERHT--- 529 (758)
T ss_dssp TTSCSCHHHHHHHHHHHHHHHTTCSCTTSCSEEEEEECSTTSSHHHHHHHHHHH--HT---CEEEEEEGGGCSSSSC---
T ss_pred hhccCHHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCcHHHHHHHHHHH--hc---CCEEEEechhhcchhh---
Confidence 3588999988888887764321 00234467999999999999999999884 32 2344555543221100
Q ss_pred HHHHHhcCCCCCCCcHHHHHHHHHHHh-cCceEEEEEecCCCCCccChhHHHHhhhCCC-----------CCcEEEEEcC
Q 002308 227 AMLEALTGSTSNLNALQSLLISIDESI-AGKRFLLVLDDVWDGDYIKWEPFYRCLKKGL-----------HGSKILITTR 294 (938)
Q Consensus 227 ~i~~~l~~~~~~~~~~~~~~~~l~~~l-~~~~~LlVlDdv~~~~~~~~~~l~~~l~~~~-----------~gs~ilvTtr 294 (938)
...+.+....-...++ ...+...+ +...-+|+||++..........+...+..+. ....||.||.
T Consensus 530 --~~~l~g~~~g~~g~~~-~~~l~~~~~~~~~~vl~lDEi~~~~~~~~~~Ll~~le~~~~~~~~g~~~~~~~~~iI~tsN 606 (758)
T 1r6b_X 530 --VSRLIGAPPGYVGFDQ-GGLLTDAVIKHPHAVLLLDEIEKAHPDVFNILLQVMDNGTLTDNNGRKADFRNVVLVMTTN 606 (758)
T ss_dssp --CSSSCCCCSCSHHHHH-TTHHHHHHHHCSSEEEEEETGGGSCHHHHHHHHHHHHHSEEEETTTEEEECTTEEEEEEEC
T ss_pred --HhhhcCCCCCCcCccc-cchHHHHHHhCCCcEEEEeCccccCHHHHHHHHHHhcCcEEEcCCCCEEecCCeEEEEecC
Confidence 0011111111111111 11122222 2446799999998766555666666665431 2344777775
Q ss_pred C
Q 002308 295 K 295 (938)
Q Consensus 295 ~ 295 (938)
.
T Consensus 607 ~ 607 (758)
T 1r6b_X 607 A 607 (758)
T ss_dssp S
T ss_pred c
Confidence 4
No 237
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=97.12 E-value=0.0014 Score=69.72 Aligned_cols=152 Identities=14% Similarity=0.129 Sum_probs=85.3
Q ss_pred CceecchhhHHHHHHHHhccCcccCCCeEEEEEEccCCChHHHHHHHHhhhhhhhcccCeEEEEEeCCCCCHHHHHHHHH
Q 002308 150 EEICGRVGERNALLSMLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNHVEVKREFDKTLWVCVSETFDEFRIAKAML 229 (938)
Q Consensus 150 ~~~vGr~~~~~~l~~~l~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 229 (938)
..++|++..++.+...+... .-+.++|++|+|||++|+.+++. ....| ..+.+.......++....
T Consensus 27 ~~i~g~~~~~~~l~~~l~~~--------~~vll~G~pGtGKT~la~~la~~--~~~~~---~~i~~~~~~~~~~l~g~~- 92 (331)
T 2r44_A 27 KVVVGQKYMINRLLIGICTG--------GHILLEGVPGLAKTLSVNTLAKT--MDLDF---HRIQFTPDLLPSDLIGTM- 92 (331)
T ss_dssp TTCCSCHHHHHHHHHHHHHT--------CCEEEESCCCHHHHHHHHHHHHH--TTCCE---EEEECCTTCCHHHHHEEE-
T ss_pred cceeCcHHHHHHHHHHHHcC--------CeEEEECCCCCcHHHHHHHHHHH--hCCCe---EEEecCCCCChhhcCCce-
Confidence 45889999999888888642 25899999999999999999873 33222 234443333333221110
Q ss_pred HHhcCCCCCCCcHHHHHHHHHHHhcC--ceEEEEEecCCCCCccChhHHHHhhhCC-----------CCCcEEEEEcCCh
Q 002308 230 EALTGSTSNLNALQSLLISIDESIAG--KRFLLVLDDVWDGDYIKWEPFYRCLKKG-----------LHGSKILITTRKE 296 (938)
Q Consensus 230 ~~l~~~~~~~~~~~~~~~~l~~~l~~--~~~LlVlDdv~~~~~~~~~~l~~~l~~~-----------~~gs~ilvTtr~~ 296 (938)
........... ..+ ...++++|+++.........+...+... .....|+.|+...
T Consensus 93 --~~~~~~~~~~~----------~~g~l~~~vl~iDEi~~~~~~~~~~Ll~~l~~~~~~~~g~~~~~~~~~~viat~np~ 160 (331)
T 2r44_A 93 --IYNQHKGNFEV----------KKGPVFSNFILADEVNRSPAKVQSALLECMQEKQVTIGDTTYPLDNPFLVLATQNPV 160 (331)
T ss_dssp --EEETTTTEEEE----------EECTTCSSEEEEETGGGSCHHHHHHHHHHHHHSEEEETTEEEECCSSCEEEEEECTT
T ss_pred --eecCCCCceEe----------ccCcccccEEEEEccccCCHHHHHHHHHHHhcCceeeCCEEEECCCCEEEEEecCCC
Confidence 00000000000 001 1248999999876544445555554432 2234455455422
Q ss_pred h------hhhh-hcCCc-eEeCCCCChHHHHHHHHHhhc
Q 002308 297 S------IVSM-MRSTD-IISIEELAEEECWVLFKRLAF 327 (938)
Q Consensus 297 ~------v~~~-~~~~~-~~~l~~L~~~~~~~lf~~~~~ 327 (938)
. +... ..... .+.+.+.+.++-.+++...+.
T Consensus 161 ~~~~~~~l~~~l~~Rf~~~i~i~~p~~~~~~~il~~~~~ 199 (331)
T 2r44_A 161 EQEGTYPLPEAQVDRFMMKIHLTYLDKESELEVMRRVSN 199 (331)
T ss_dssp CCSCCCCCCHHHHTTSSEEEECCCCCHHHHHHHHHHHHC
T ss_pred cccCcccCCHHHHhheeEEEEcCCCCHHHHHHHHHhccc
Confidence 2 1111 11122 588999999999999888764
No 238
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=97.09 E-value=0.0026 Score=74.56 Aligned_cols=180 Identities=12% Similarity=0.054 Sum_probs=97.3
Q ss_pred CCceecchhhHHHHHHHHhc----cCc---ccCCCeEEEEEEccCCChHHHHHHHHhhhhhhhcccCeEEEEEeCCCCCH
Q 002308 149 EEEICGRVGERNALLSMLLC----ESS---EQQKGLHIISIVGMGGIGKTTLAQLACNHVEVKREFDKTLWVCVSETFDE 221 (938)
Q Consensus 149 ~~~~vGr~~~~~~l~~~l~~----~~~---~~~~~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~ 221 (938)
-+.+.|-+...++|.+.+.- +.- -+...++-|.++|++|+|||+||+++++. ...+ .+.|+.+.
T Consensus 203 ~~dIgGl~~~~~~l~e~v~~pl~~p~~f~~~g~~~p~GILL~GPPGTGKT~LAraiA~e--lg~~---~~~v~~~~---- 273 (806)
T 3cf2_A 203 YDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANE--TGAF---FFLINGPE---- 273 (806)
T ss_dssp GGGCCSCCTTHHHHHHHHHHHHHCCGGGTSCCCCCCCEEEEECCTTSCHHHHHHHHHTT--TTCE---EEEEEHHH----
T ss_pred hhhhcCHHHHHHHHHHHHHHHccCHHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHH--hCCe---EEEEEhHH----
Confidence 34578888888887776532 110 01234577899999999999999999984 3333 23443221
Q ss_pred HHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHhcCceEEEEEecCCCCC------ccC-----hhHHHHhhhCC--CCCcE
Q 002308 222 FRIAKAMLEALTGSTSNLNALQSLLISIDESIAGKRFLLVLDDVWDGD------YIK-----WEPFYRCLKKG--LHGSK 288 (938)
Q Consensus 222 ~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~------~~~-----~~~l~~~l~~~--~~gs~ 288 (938)
+... . .......+...+.......+.+|++|+++..- ... ...+...+... ..+..
T Consensus 274 ------l~sk----~-~gese~~lr~lF~~A~~~~PsIIfIDEiDal~~~r~~~~~~~~~riv~~LL~~mdg~~~~~~V~ 342 (806)
T 3cf2_A 274 ------IMSK----L-AGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVI 342 (806)
T ss_dssp ------HHSS----C-TTHHHHHHHHHHHHHTTSCSEEEEEESGGGTCCTTTTCCCTTHHHHHHHHHTHHHHCCGGGCEE
T ss_pred ------hhcc----c-chHHHHHHHHHHHHHHHcCCeEEEEehhcccccccCCCCChHHHHHHHHHHHHHhcccccCCEE
Confidence 1110 0 01111222233333445678999999985421 001 11222222221 23344
Q ss_pred EEEEcCChhhh-hhh----cCCceEeCCCCChHHHHHHHHHhhcCCCCCchhhHHHHHHHHHHHhcCCCh
Q 002308 289 ILITTRKESIV-SMM----RSTDIISIEELAEEECWVLFKRLAFFGRSTEECEKLEQIGQRIARKCKGLP 353 (938)
Q Consensus 289 ilvTtr~~~v~-~~~----~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~P 353 (938)
||.||...+.. ..+ .-...+++..-+.++..++|..+...... ....+ ...|++++.|.-
T Consensus 343 VIaaTN~~d~LD~ALrR~GRFd~~I~i~~Pd~~~R~~IL~~~l~~~~~-~~dvd----l~~lA~~T~Gfs 407 (806)
T 3cf2_A 343 VMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKL-ADDVD----LEQVANETHGHV 407 (806)
T ss_dssp EEEECSSTTTSCTTTTSTTSSCEEEECCCCCHHHHHHHHHHTCSSSEE-CTTCC----HHHHHHHCCSCC
T ss_pred EEEecCChhhcCHHHhCCcccceEEecCCCCHHHHHHHHHHHhcCCCC-CcccC----HHHHHHhcCCCC
Confidence 55566654322 222 12457889988999999999887532211 11112 456777777653
No 239
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=97.05 E-value=0.0045 Score=64.28 Aligned_cols=26 Identities=31% Similarity=0.321 Sum_probs=22.7
Q ss_pred CCeEEEEEEccCCChHHHHHHHHhhh
Q 002308 175 KGLHIISIVGMGGIGKTTLAQLACNH 200 (938)
Q Consensus 175 ~~~~vv~i~G~~GiGKTtLa~~v~~~ 200 (938)
..++.+.++|++|+|||+||+.+++.
T Consensus 34 ~~p~~lLl~GppGtGKT~la~aiA~~ 59 (293)
T 3t15_A 34 KVPLILGIWGGKGQGKSFQCELVFRK 59 (293)
T ss_dssp CCCSEEEEEECTTSCHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 34567899999999999999999984
No 240
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=97.05 E-value=0.0014 Score=74.36 Aligned_cols=165 Identities=17% Similarity=0.178 Sum_probs=78.5
Q ss_pred CceecchhhHHHHHHHHhccCcccCCCeEEEEEEccCCChHHHHHHHHhhhhhhhcccCeEEEEEeCCCCCHHHHHHHHH
Q 002308 150 EEICGRVGERNALLSMLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNHVEVKREFDKTLWVCVSETFDEFRIAKAML 229 (938)
Q Consensus 150 ~~~vGr~~~~~~l~~~l~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 229 (938)
..++|.+...+.+.+.+.-..-.......++.++|++|+||||||+.++.. ....| ..+.++...+...+.....
T Consensus 81 ~di~G~~~vk~~i~~~~~l~~~~~~~~g~~vll~Gp~GtGKTtlar~ia~~--l~~~~---~~i~~~~~~~~~~~~g~~~ 155 (543)
T 3m6a_A 81 EEHHGLEKVKERILEYLAVQKLTKSLKGPILCLAGPPGVGKTSLAKSIAKS--LGRKF---VRISLGGVRDESEIRGHRR 155 (543)
T ss_dssp HHCSSCHHHHHHHHHHHHHHHHSSSCCSCEEEEESSSSSSHHHHHHHHHHH--HTCEE---EEECCCC------------
T ss_pred HHhccHHHHHHHHHHHHHHHHhcccCCCCEEEEECCCCCCHHHHHHHHHHh--cCCCe---EEEEecccchhhhhhhHHH
Confidence 357888777766655443211000124568999999999999999999884 33222 2233333222221111111
Q ss_pred HHhcCCCCCCCcHHHHHHHHHHHhcCceEEEEEecCCCCCcc----ChhHHHHhhhCCC---------------CCcEEE
Q 002308 230 EALTGSTSNLNALQSLLISIDESIAGKRFLLVLDDVWDGDYI----KWEPFYRCLKKGL---------------HGSKIL 290 (938)
Q Consensus 230 ~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~~~----~~~~l~~~l~~~~---------------~gs~il 290 (938)
...+.. . ......+.. .....-+++||++...... ....+...+.... ....||
T Consensus 156 ~~ig~~---~---~~~~~~~~~-a~~~~~vl~lDEid~l~~~~~~~~~~~LL~~ld~~~~~~~~~~~~~~~~~~~~v~iI 228 (543)
T 3m6a_A 156 TYVGAM---P---GRIIQGMKK-AGKLNPVFLLDEIDKMSSDFRGDPSSAMLEVLDPEQNSSFSDHYIEETFDLSKVLFI 228 (543)
T ss_dssp --------------CHHHHHHT-TCSSSEEEEEEESSSCC---------CCGGGTCTTTTTBCCCSSSCCCCBCSSCEEE
T ss_pred HHhccC---c---hHHHHHHHH-hhccCCEEEEhhhhhhhhhhccCHHHHHHHHHhhhhcceeecccCCeeecccceEEE
Confidence 111100 0 001111221 1223348889999764322 1233334332211 234566
Q ss_pred EEcCChhhhh-h-hcCCceEeCCCCChHHHHHHHHHhh
Q 002308 291 ITTRKESIVS-M-MRSTDIISIEELAEEECWVLFKRLA 326 (938)
Q Consensus 291 vTtr~~~v~~-~-~~~~~~~~l~~L~~~~~~~lf~~~~ 326 (938)
.||....... . ......+.+.+++.++-.+++..+.
T Consensus 229 ~ttN~~~~l~~aL~~R~~vi~~~~~~~~e~~~Il~~~l 266 (543)
T 3m6a_A 229 ATANNLATIPGPLRDRMEIINIAGYTEIEKLEIVKDHL 266 (543)
T ss_dssp EECSSTTTSCHHHHHHEEEEECCCCCHHHHHHHHHHTH
T ss_pred eccCccccCCHHHHhhcceeeeCCCCHHHHHHHHHHHH
Confidence 6666543111 1 1122478899999998888887754
No 241
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=97.03 E-value=0.012 Score=60.28 Aligned_cols=155 Identities=14% Similarity=0.092 Sum_probs=81.4
Q ss_pred CceecchhhHHHHHHHHhccCcc--------cCCCeEEEEEEccCCChHHHHHHHHhhhhhhhcccCeEEEEEeCCCCCH
Q 002308 150 EEICGRVGERNALLSMLLCESSE--------QQKGLHIISIVGMGGIGKTTLAQLACNHVEVKREFDKTLWVCVSETFDE 221 (938)
Q Consensus 150 ~~~vGr~~~~~~l~~~l~~~~~~--------~~~~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~ 221 (938)
..+.|-++..+.+.+.+..+-.. -..... +.|+|++|+||||||+.++.. ... ..+++....-.+.
T Consensus 10 ~di~g~~~~~~~l~~~i~~~~~~~~~l~~~~l~~~~G-vlL~Gp~GtGKTtLakala~~--~~~---~~i~i~g~~l~~~ 83 (274)
T 2x8a_A 10 ADIGALEDIREELTMAILAPVRNPDQFKALGLVTPAG-VLLAGPPGCGKTLLAKAVANE--SGL---NFISVKGPELLNM 83 (274)
T ss_dssp --CCHHHHHHHHHHHHHTHHHHSHHHHHHTTCCCCSE-EEEESSTTSCHHHHHHHHHHH--TTC---EEEEEETTTTCSS
T ss_pred HHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCCe-EEEECCCCCcHHHHHHHHHHH--cCC---CEEEEEcHHHHhh
Confidence 45778887777776654311000 011223 999999999999999999883 221 2344443221100
Q ss_pred HHHHHHHHHHhcCCCCCCCcHHHHHHHHHHH-hcCceEEEEEecCCCCCc-----------cChhHHHHhhhCC--CCCc
Q 002308 222 FRIAKAMLEALTGSTSNLNALQSLLISIDES-IAGKRFLLVLDDVWDGDY-----------IKWEPFYRCLKKG--LHGS 287 (938)
Q Consensus 222 ~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~-l~~~~~LlVlDdv~~~~~-----------~~~~~l~~~l~~~--~~gs 287 (938)
...........+.+. -...+.++++|++..... .....+...+..+ ....
T Consensus 84 ----------------~~~~~~~~i~~vf~~a~~~~p~i~~~Deid~~~~~r~~~~~~~~~~~~~~~l~~Lsgg~~~~~~ 147 (274)
T 2x8a_A 84 ----------------YVGESERAVRQVFQRAKNSAPCVIFFDEVDALCPRRSDRETGASVRVVNQLLTEMDGLEARQQV 147 (274)
T ss_dssp ----------------TTHHHHHHHHHHHHHHHHTCSEEEEEETCTTTCC---------CTTHHHHHHHHHHTCCSTTCE
T ss_pred ----------------hhhHHHHHHHHHHHHHHhcCCCeEeeehhhhhhcccCCCcchHHHHHHHHHHHhhhcccccCCE
Confidence 000011111222222 134578999999864210 0012223333332 2334
Q ss_pred EEEEEcCChhhhhhh-----cCCceEeCCCCChHHHHHHHHHhh
Q 002308 288 KILITTRKESIVSMM-----RSTDIISIEELAEEECWVLFKRLA 326 (938)
Q Consensus 288 ~ilvTtr~~~v~~~~-----~~~~~~~l~~L~~~~~~~lf~~~~ 326 (938)
-++.+|..+.+.... .-...+.+...+.++..+++....
T Consensus 148 i~ia~tn~p~~LD~al~r~gRfd~~i~~~~P~~~~r~~il~~~~ 191 (274)
T 2x8a_A 148 FIMAATNRPDIIDPAILRPGRLDKTLFVGLPPPADRLAILKTIT 191 (274)
T ss_dssp EEEEEESCGGGSCHHHHSTTSSCEEEECCSCCHHHHHHHHHHHT
T ss_pred EEEeecCChhhCCHhhcCcccCCeEEEeCCcCHHHHHHHHHHHH
Confidence 455666666543321 224578888889999999998765
No 242
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=96.81 E-value=0.00084 Score=68.94 Aligned_cols=69 Identities=19% Similarity=0.288 Sum_probs=45.5
Q ss_pred eEEEEEEccCCChHHHHHHHHhhhhhhhcccCeEEEEEe--CCCCCHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHhc
Q 002308 177 LHIISIVGMGGIGKTTLAQLACNHVEVKREFDKTLWVCV--SETFDEFRIAKAMLEALTGSTSNLNALQSLLISIDESIA 254 (938)
Q Consensus 177 ~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~--~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~ 254 (938)
.+++.|+|++|+|||+||.+++.. . -..++|+++ .+..+. ...+.++....+.+.+.
T Consensus 123 gsviLI~GpPGsGKTtLAlqlA~~---~--G~~VlyIs~~~eE~v~~----------------~~~~le~~l~~i~~~l~ 181 (331)
T 2vhj_A 123 SGMVIVTGKGNSGKTPLVHALGEA---L--GGKDKYATVRFGEPLSG----------------YNTDFNVFVDDIARAML 181 (331)
T ss_dssp SEEEEEECSCSSSHHHHHHHHHHH---H--HTTSCCEEEEBSCSSTT----------------CBCCHHHHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHh---C--CCCEEEEEecchhhhhh----------------hhcCHHHHHHHHHHHHh
Confidence 457789999999999999999874 1 124567776 332110 00345555555666665
Q ss_pred CceEEEEEecCCC
Q 002308 255 GKRFLLVLDDVWD 267 (938)
Q Consensus 255 ~~~~LlVlDdv~~ 267 (938)
..+ +||+|++..
T Consensus 182 ~~~-LLVIDsI~a 193 (331)
T 2vhj_A 182 QHR-VIVIDSLKN 193 (331)
T ss_dssp HCS-EEEEECCTT
T ss_pred hCC-EEEEecccc
Confidence 555 999999954
No 243
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=96.75 E-value=0.011 Score=59.89 Aligned_cols=156 Identities=13% Similarity=0.129 Sum_probs=78.9
Q ss_pred CCceecchhhHHHHHHHHhccCcc-------cCCCeEEEEEEccCCChHHHHHHHHhhhhhhhcccCeEEEEEeCCCCCH
Q 002308 149 EEEICGRVGERNALLSMLLCESSE-------QQKGLHIISIVGMGGIGKTTLAQLACNHVEVKREFDKTLWVCVSETFDE 221 (938)
Q Consensus 149 ~~~~vGr~~~~~~l~~~l~~~~~~-------~~~~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~ 221 (938)
-+.++|.+....++......-... -..... +.|+|++|+||||||+.++... . ...+.+...
T Consensus 15 ~~~i~g~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~g-~ll~G~~G~GKTtl~~~i~~~~--~---~~~i~~~~~----- 83 (254)
T 1ixz_A 15 FKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKG-VLLVGPPGVGKTHLARAVAGEA--R---VPFITASGS----- 83 (254)
T ss_dssp GGGCCSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCSE-EEEECCTTSSHHHHHHHHHHHT--T---CCEEEEEHH-----
T ss_pred HHHhCCcHHHHHHHHHHHHHHHCHHHHHHcCCCCCCe-EEEECCCCCCHHHHHHHHHHHh--C---CCEEEeeHH-----
Confidence 356888876655555433211000 001123 8999999999999999999842 2 222333321
Q ss_pred HHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHh-cCceEEEEEecCCCCC----------ccC----hhHHHHhhhCCC--
Q 002308 222 FRIAKAMLEALTGSTSNLNALQSLLISIDESI-AGKRFLLVLDDVWDGD----------YIK----WEPFYRCLKKGL-- 284 (938)
Q Consensus 222 ~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l-~~~~~LlVlDdv~~~~----------~~~----~~~l~~~l~~~~-- 284 (938)
. +.... ..........+-+.. ...+.++++|++.... ... ...+...+..+.
T Consensus 84 -~----~~~~~------~~~~~~~i~~~~~~~~~~~~~i~~~Deid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~g~~~~ 152 (254)
T 1ixz_A 84 -D----FVEMF------VGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKD 152 (254)
T ss_dssp -H----HHHSC------TTHHHHHHHHHHHHHTTSSSEEEEEETHHHHHC---------CHHHHHHHHHHHHHHHTCCTT
T ss_pred -H----HHHHH------hhHHHHHHHHHHHHHHhcCCeEEEehhhhhhhcccCccccccchHHHHHHHHHHHHHhCCCCC
Confidence 1 11110 001111122222222 2456899999984210 011 122333333322
Q ss_pred CCcEEEEEcCChhhhhh-h----cCCceEeCCCCChHHHHHHHHHhh
Q 002308 285 HGSKILITTRKESIVSM-M----RSTDIISIEELAEEECWVLFKRLA 326 (938)
Q Consensus 285 ~gs~ilvTtr~~~v~~~-~----~~~~~~~l~~L~~~~~~~lf~~~~ 326 (938)
....++.||..+..... . .-...+.+...+.++..+++..++
T Consensus 153 ~~~i~~a~t~~p~~ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~ 199 (254)
T 1ixz_A 153 TAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHA 199 (254)
T ss_dssp CCEEEEEEESCGGGSCGGGGSTTSSCEEEECCSCCHHHHHHHHHHHH
T ss_pred CCEEEEEccCCchhCCHHHcCCCcCCeEEeeCCcCHHHHHHHHHHHH
Confidence 22334456665544322 1 123478888888888888888765
No 244
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=96.74 E-value=0.019 Score=62.18 Aligned_cols=50 Identities=24% Similarity=0.261 Sum_probs=34.8
Q ss_pred ceecchhhHHHHHHHHh----ccCc--------------------ccCCCeEEEEEEccCCChHHHHHHHHhhh
Q 002308 151 EICGRVGERNALLSMLL----CESS--------------------EQQKGLHIISIVGMGGIGKTTLAQLACNH 200 (938)
Q Consensus 151 ~~vGr~~~~~~l~~~l~----~~~~--------------------~~~~~~~vv~i~G~~GiGKTtLa~~v~~~ 200 (938)
.++|.+...+.+...+. .... ........+.++|++|+|||++|+.+++.
T Consensus 22 ~viGq~~ak~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~p~~~~~~~~~~~~~ill~Gp~GtGKT~la~~la~~ 95 (376)
T 1um8_A 22 YVIGQEQAKKVFSVAVYNHYKRLSFKEKLKKQDNQDSNVELEHLEEVELSKSNILLIGPTGSGKTLMAQTLAKH 95 (376)
T ss_dssp TCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHTTCCCCCEEEECCTTSSHHHHHHHHHHH
T ss_pred HccCcHHHHHHHHHHHHHHHHHHHhhhhhhhccccccccccccccccccCCCCEEEECCCCCCHHHHHHHHHHH
Confidence 47888888887777662 1000 00113456899999999999999999883
No 245
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*
Probab=96.64 E-value=0.031 Score=59.57 Aligned_cols=157 Identities=9% Similarity=-0.045 Sum_probs=98.6
Q ss_pred CeEEEEEEccCCChHHHHHHHHhhhhhhhcccCeEEEEEeCCCCCHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHH-Hhc
Q 002308 176 GLHIISIVGMGGIGKTTLAQLACNHVEVKREFDKTLWVCVSETFDEFRIAKAMLEALTGSTSNLNALQSLLISIDE-SIA 254 (938)
Q Consensus 176 ~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~-~l~ 254 (938)
-.++..++|+.|.||++.+..+..... ...|+....+.+....+..+ +...+.. -+-
T Consensus 17 ~~~~yl~~G~e~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~---------------------l~~~~~~~plf 74 (343)
T 1jr3_D 17 LRAAYLLLGNDPLLLQESQDAVRQVAA-AQGFEEHHTFSIDPNTDWNA---------------------IFSLCQAMSLF 74 (343)
T ss_dssp CCSEEEEEESCHHHHHHHHHHHHHHHH-HHTCCEEEEEECCTTCCHHH---------------------HHHHHHHHHHC
T ss_pred CCcEEEEECCcHHHHHHHHHHHHHHHH-hCCCCeeEEEEecCCCCHHH---------------------HHHHhcCcCCc
Confidence 346889999999999999999988432 23453222222333233333 2222221 123
Q ss_pred CceEEEEEecCCC-CCccChhHHHHhhhCCCCCcEEEEEcCC-------hhhhhhh-cCCceEeCCCCChHHHHHHHHHh
Q 002308 255 GKRFLLVLDDVWD-GDYIKWEPFYRCLKKGLHGSKILITTRK-------ESIVSMM-RSTDIISIEELAEEECWVLFKRL 325 (938)
Q Consensus 255 ~~~~LlVlDdv~~-~~~~~~~~l~~~l~~~~~gs~ilvTtr~-------~~v~~~~-~~~~~~~l~~L~~~~~~~lf~~~ 325 (938)
+++-++|+|+++. .....++.+...+..-.+++.+|+++.. ..+...+ .....++..+++.++....+...
T Consensus 75 ~~~kvvii~~~~~kl~~~~~~aLl~~le~p~~~~~~il~~~~~~~~~~~~k~~~~i~sr~~~~~~~~l~~~~l~~~l~~~ 154 (343)
T 1jr3_D 75 ASRQTLLLLLPENGPNAAINEQLLTLTGLLHDDLLLIVRGNKLSKAQENAAWFTALANRSVQVTCQTPEQAQLPRWVAAR 154 (343)
T ss_dssp CSCEEEEEECCSSCCCTTHHHHHHHHHTTCBTTEEEEEEESCCCTTTTTSHHHHHHTTTCEEEEECCCCTTHHHHHHHHH
T ss_pred cCCeEEEEECCCCCCChHHHHHHHHHHhcCCCCeEEEEEcCCCChhhHhhHHHHHHHhCceEEEeeCCCHHHHHHHHHHH
Confidence 5567888999876 4445677788888765667777766543 2233332 34568899999999998888777
Q ss_pred hcCCCCCchhhHHHHHHHHHHHhcCCChhHHHH
Q 002308 326 AFFGRSTEECEKLEQIGQRIARKCKGLPLAAKT 358 (938)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~ 358 (938)
+...+.... .+.+..+++.++|.+..+..
T Consensus 155 ~~~~g~~i~----~~a~~~l~~~~~gdl~~~~~ 183 (343)
T 1jr3_D 155 AKQLNLELD----DAANQVLCYCYEGNLLALAQ 183 (343)
T ss_dssp HHHTTCEEC----HHHHHHHHHSSTTCHHHHHH
T ss_pred HHHcCCCCC----HHHHHHHHHHhchHHHHHHH
Confidence 643332222 23367888999998877654
No 246
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=96.60 E-value=0.021 Score=58.73 Aligned_cols=179 Identities=13% Similarity=0.101 Sum_probs=88.6
Q ss_pred CCCceecchhhHHHHHHHHhccCcc-------cCCCeEEEEEEccCCChHHHHHHHHhhhhhhhcccCeEEEEEeCCCCC
Q 002308 148 DEEEICGRVGERNALLSMLLCESSE-------QQKGLHIISIVGMGGIGKTTLAQLACNHVEVKREFDKTLWVCVSETFD 220 (938)
Q Consensus 148 ~~~~~vGr~~~~~~l~~~l~~~~~~-------~~~~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~ 220 (938)
.-+.++|.+...+++......-... -..... +.|+|++|+||||||+.++... . ...+.+...
T Consensus 38 ~~~~i~g~~~~~~~l~~l~~~~~~~~~l~~~~~~~~~g-vll~Gp~GtGKTtl~~~i~~~~--~---~~~i~~~~~---- 107 (278)
T 1iy2_A 38 TFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKG-VLLVGPPGVGKTHLARAVAGEA--R---VPFITASGS---- 107 (278)
T ss_dssp CGGGSSSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCCE-EEEECCTTSSHHHHHHHHHHHT--T---CCEEEEEHH----
T ss_pred CHHHhCChHHHHHHHHHHHHHHHCHHHHHHcCCCCCCe-EEEECCCcChHHHHHHHHHHHc--C---CCEEEecHH----
Confidence 3457889887666655543311000 001123 8999999999999999999842 2 223333321
Q ss_pred HHHHHHHHHHHhcCCCCCCCcHHHHH-HHHHHHhcCceEEEEEecCCCCC----------ccChh----HHHHhhhCCC-
Q 002308 221 EFRIAKAMLEALTGSTSNLNALQSLL-ISIDESIAGKRFLLVLDDVWDGD----------YIKWE----PFYRCLKKGL- 284 (938)
Q Consensus 221 ~~~~~~~i~~~l~~~~~~~~~~~~~~-~~l~~~l~~~~~LlVlDdv~~~~----------~~~~~----~l~~~l~~~~- 284 (938)
. +.... ........ ..++..-...+.++|+|++.... ...+. .+...+..+.
T Consensus 108 --~----~~~~~------~~~~~~~i~~~~~~~~~~~~~i~~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~lsgg~~ 175 (278)
T 1iy2_A 108 --D----FVEMF------VGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEK 175 (278)
T ss_dssp --H----HHHST------TTHHHHHHHHHHHHHHTSCSEEEEEETHHHHHCC--------CHHHHHHHHHHHHHHTTCCT
T ss_pred --H----HHHHH------hhHHHHHHHHHHHHHHhcCCcEEehhhhHhhhcccccccCCcchHHHHHHHHHHHHHhCCCC
Confidence 1 11110 00111111 22222222456899999984210 01111 2222233222
Q ss_pred -CCcEEEEEcCChhhhhh-h----cCCceEeCCCCChHHHHHHHHHhhcCCCCCchhhHHHHHHHHHHHhcCCCh
Q 002308 285 -HGSKILITTRKESIVSM-M----RSTDIISIEELAEEECWVLFKRLAFFGRSTEECEKLEQIGQRIARKCKGLP 353 (938)
Q Consensus 285 -~gs~ilvTtr~~~v~~~-~----~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~P 353 (938)
....++.||..+.+... . .-...+.+...+.++..+++..++..... ..... ...+++.+.|..
T Consensus 176 ~~~~i~~a~t~~p~~ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~~~~~-~~~~~----~~~la~~~~G~~ 245 (278)
T 1iy2_A 176 DTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPL-AEDVD----LALLAKRTPGFV 245 (278)
T ss_dssp TCCEEEEEEESCTTSSCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHTTSCB-CTTCC----HHHHHHTCTTCC
T ss_pred CCCEEEEEecCCchhCCHhHcCCCcCCeEEEeCCcCHHHHHHHHHHHHccCCC-CcccC----HHHHHHHcCCCC
Confidence 22334445555543221 1 22457889998999888888876532211 11111 335667776654
No 247
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=96.60 E-value=0.055 Score=60.03 Aligned_cols=177 Identities=12% Similarity=0.078 Sum_probs=92.5
Q ss_pred CCCceecchhhHHHHHHHHh---ccCcc---cCCCeEEEEEEccCCChHHHHHHHHhhhhhhhcccCeEEEEEeCCCCCH
Q 002308 148 DEEEICGRVGERNALLSMLL---CESSE---QQKGLHIISIVGMGGIGKTTLAQLACNHVEVKREFDKTLWVCVSETFDE 221 (938)
Q Consensus 148 ~~~~~vGr~~~~~~l~~~l~---~~~~~---~~~~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~ 221 (938)
.-..++|.+..+.++.+... ....- +..-.+-+.|+|++|+|||+||+.++.. .. ...+.++.+.-..
T Consensus 29 ~f~dv~G~~~~k~~l~~lv~~l~~~~~~~~lg~~ip~GvLL~GppGtGKTtLaraIa~~--~~---~~~i~i~g~~~~~- 102 (499)
T 2dhr_A 29 TFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGE--AR---VPFITASGSDFVE- 102 (499)
T ss_dssp CTTSSCSCHHHHHHHHHHHHHHHCGGGTTTTSCCCCSEEEEECSSSSSHHHHHHHHHHH--TT---CCEEEEEGGGGTS-
T ss_pred CHHHcCCcHHHHHHHHHHHHHhhchhhhhhccCCCCceEEEECCCCCCHHHHHHHHHHH--hC---CCEEEEehhHHHH-
Confidence 34578998877666655443 21100 0011223899999999999999999984 22 2234444332100
Q ss_pred HHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHhcC----ceEEEEEecCCCCC----------ccCh----hHHHHhhhCC
Q 002308 222 FRIAKAMLEALTGSTSNLNALQSLLISIDESIAG----KRFLLVLDDVWDGD----------YIKW----EPFYRCLKKG 283 (938)
Q Consensus 222 ~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~----~~~LlVlDdv~~~~----------~~~~----~~l~~~l~~~ 283 (938)
. -.......+...++. .+.++++|++.... ...+ ..+...+..+
T Consensus 103 -------------~-----~~g~~~~~v~~lfq~a~~~~p~il~IDEId~l~~~r~~~~~~~~~e~~~~l~~LL~~Ldg~ 164 (499)
T 2dhr_A 103 -------------M-----FVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGF 164 (499)
T ss_dssp -------------S-----CTTHHHHHHHHHTTTSSSSSSCEEEEECGGGTCCCSSSSTTTSSHHHHHHHHHHHHHGGGC
T ss_pred -------------h-----hhhhHHHHHHHHHHHHHhcCCCEEEEehHHHHHHhhccCcCCCcHHHHHHHHHHHHHhccc
Confidence 0 001112223333332 35799999995321 0111 2233333322
Q ss_pred --CCCcEEEEEcCChhhhhh-h----cCCceEeCCCCChHHHHHHHHHhhcCCCCCchhhHHHHHHHHHHHhcCCCh
Q 002308 284 --LHGSKILITTRKESIVSM-M----RSTDIISIEELAEEECWVLFKRLAFFGRSTEECEKLEQIGQRIARKCKGLP 353 (938)
Q Consensus 284 --~~gs~ilvTtr~~~v~~~-~----~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~P 353 (938)
..+..|+.||..+..... . .-...+.+...+.++..+++..++...... .... ...|++.+.|+.
T Consensus 165 ~~~~~viviAatn~p~~LD~aLlr~gRfdr~i~i~~Pd~~~R~~IL~~~~~~~~l~-~dv~----l~~lA~~t~G~~ 236 (499)
T 2dhr_A 165 EKDTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLA-EDVD----LALLAKRTPGFV 236 (499)
T ss_dssp CSSCCCEEEECCSCGGGSCTTTSSTTSSCCEEECCCCCHHHHHHHHHHTTSSSCCC-CSST----THHHHTTSCSCC
T ss_pred ccCccEEEEEecCChhhcCcccccccccceEEecCCCCHHHHHHHHHHHHhcCCCC-hHHH----HHHHHHhcCCCC
Confidence 233445556666654322 1 123578899889998899998775322111 1111 345777777765
No 248
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=96.60 E-value=0.01 Score=58.63 Aligned_cols=86 Identities=21% Similarity=0.191 Sum_probs=52.2
Q ss_pred CeEEEEEEccCCChHHHHHHHHhhhhhhhcccCeEEEEEeCCCCCHHHHHHHHHHHhcC------------CCCCCCcHH
Q 002308 176 GLHIISIVGMGGIGKTTLAQLACNHVEVKREFDKTLWVCVSETFDEFRIAKAMLEALTG------------STSNLNALQ 243 (938)
Q Consensus 176 ~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~------------~~~~~~~~~ 243 (938)
...++.|+|++|+|||||+..++. . .-..++|++.....+...+.. +.+..+. ......+..
T Consensus 19 ~G~~~~i~G~~GsGKTtl~~~l~~--~---~~~~v~~i~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (220)
T 2cvh_A 19 PGVLTQVYGPYASGKTTLALQTGL--L---SGKKVAYVDTEGGFSPERLVQ-MAETRGLNPEEALSRFILFTPSDFKEQR 92 (220)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHH--H---HCSEEEEEESSCCCCHHHHHH-HHHTTTCCHHHHHHHEEEECCTTTSHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH--H---cCCcEEEEECCCCCCHHHHHH-HHHhcCCChHHHhhcEEEEecCCHHHHH
Confidence 346899999999999999999987 1 124678888776556555443 3332211 111122223
Q ss_pred HHHHHHHHHhcCceEEEEEecCCC
Q 002308 244 SLLISIDESIAGKRFLLVLDDVWD 267 (938)
Q Consensus 244 ~~~~~l~~~l~~~~~LlVlDdv~~ 267 (938)
+....+......+.-+||+|.+..
T Consensus 93 ~~~~~~~~l~~~~~~lliiD~~~~ 116 (220)
T 2cvh_A 93 RVIGSLKKTVDSNFALVVVDSITA 116 (220)
T ss_dssp HHHHHHHHHCCTTEEEEEEECCCC
T ss_pred HHHHHHHHHhhcCCCEEEEcCcHH
Confidence 334444444444567899998754
No 249
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=96.56 E-value=0.0076 Score=71.87 Aligned_cols=158 Identities=12% Similarity=0.077 Sum_probs=86.5
Q ss_pred CCceecchhhHHHHHHHHhccCcc-------cCCCeEEEEEEccCCChHHHHHHHHhhhhhhhcccCeEEEEEeCCCCCH
Q 002308 149 EEEICGRVGERNALLSMLLCESSE-------QQKGLHIISIVGMGGIGKTTLAQLACNHVEVKREFDKTLWVCVSETFDE 221 (938)
Q Consensus 149 ~~~~vGr~~~~~~l~~~l~~~~~~-------~~~~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~ 221 (938)
-..++|.+..++++.+++...-.. .-.....|.|+|++|+||||||+.++.. ....| +.++...
T Consensus 203 ~~di~G~~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLarala~~--l~~~~---i~v~~~~---- 273 (806)
T 1ypw_A 203 YDDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANE--TGAFF---FLINGPE---- 273 (806)
T ss_dssp GGGCCSCSGGGGHHHHHHHHHHHCGGGGTSSCCCCCCEEEECSCTTSSHHHHHHHHHHT--TTCEE---EEEEHHH----
T ss_pred HHHhCChHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHH--cCCcE---EEEEchH----
Confidence 356899999988888877531000 0124457999999999999999999873 33222 3333211
Q ss_pred HHHHHHHHHHhcCCCCCCCcH-HHHHHHHHHHhcCceEEEEEecCCCCCc-----------cChhHHHHhhhCC--CCCc
Q 002308 222 FRIAKAMLEALTGSTSNLNAL-QSLLISIDESIAGKRFLLVLDDVWDGDY-----------IKWEPFYRCLKKG--LHGS 287 (938)
Q Consensus 222 ~~~~~~i~~~l~~~~~~~~~~-~~~~~~l~~~l~~~~~LlVlDdv~~~~~-----------~~~~~l~~~l~~~--~~gs 287 (938)
+.... .... ......++......+.++++|++..... .....+...+... ..+.
T Consensus 274 ----------l~~~~--~g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~Ll~ll~g~~~~~~v 341 (806)
T 1ypw_A 274 ----------IMSKL--AGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHV 341 (806)
T ss_dssp ----------HSSSS--TTHHHHHHHHHHHHHHHHCSEEEEEESGGGTSCTTSCCCSHHHHHHHHHHHHHHHSSCTTSCC
T ss_pred ----------hhhhh--hhhHHHHHHHHHHHHHhcCCcEEEeccHHHhhhccccccchHHHHHHHHHHHHhhhhcccccE
Confidence 11100 0111 1122223333334678999999843210 0112233333322 2344
Q ss_pred EEEEEcCChhhhh-hhc----CCceEeCCCCChHHHHHHHHHhhc
Q 002308 288 KILITTRKESIVS-MMR----STDIISIEELAEEECWVLFKRLAF 327 (938)
Q Consensus 288 ~ilvTtr~~~v~~-~~~----~~~~~~l~~L~~~~~~~lf~~~~~ 327 (938)
.+|.||..+.... ... -...+.+...+.++..+++...+.
T Consensus 342 ~vI~atn~~~~ld~al~r~gRf~~~i~i~~p~~~~r~~il~~~~~ 386 (806)
T 1ypw_A 342 IVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTK 386 (806)
T ss_dssp EEEEECSCTTTSCTTTTSTTSSCEEECCCCCCHHHHHHHHHHTTT
T ss_pred EEecccCCchhcCHHHhcccccccccccCCCCHHHHHHHHHHHHh
Confidence 5666666543221 111 124578888889999999887653
No 250
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=96.55 E-value=0.0024 Score=62.63 Aligned_cols=113 Identities=16% Similarity=-0.025 Sum_probs=63.0
Q ss_pred CeEEEEEEccCCChHHHHHHHHhhhhhhhcccCeEEEEEeCCCCCHHHHHHHHHHHhcCCCC--CCCcHHHHHHHHHHHh
Q 002308 176 GLHIISIVGMGGIGKTTLAQLACNHVEVKREFDKTLWVCVSETFDEFRIAKAMLEALTGSTS--NLNALQSLLISIDESI 253 (938)
Q Consensus 176 ~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~--~~~~~~~~~~~l~~~l 253 (938)
...++.|+|..|+||||++..+++. ...+-..++.+...... + ....+++.++.... ......++...+.+.+
T Consensus 11 ~G~i~litG~mGsGKTT~ll~~~~r--~~~~g~kVli~~~~~d~--r-~~~~i~srlG~~~~~~~~~~~~~i~~~i~~~~ 85 (223)
T 2b8t_A 11 IGWIEFITGPMFAGKTAELIRRLHR--LEYADVKYLVFKPKIDT--R-SIRNIQSRTGTSLPSVEVESAPEILNYIMSNS 85 (223)
T ss_dssp CCEEEEEECSTTSCHHHHHHHHHHH--HHHTTCCEEEEEECCCG--G-GCSSCCCCCCCSSCCEEESSTHHHHHHHHSTT
T ss_pred CcEEEEEECCCCCcHHHHHHHHHHH--HHhcCCEEEEEEeccCc--h-HHHHHHHhcCCCccccccCCHHHHHHHHHHHh
Confidence 4578999999999999999988884 33332334444433321 1 12233444432211 1123344444454444
Q ss_pred cCc-eEEEEEecCCCCCccChhHHHHhhhCCCCCcEEEEEcCCh
Q 002308 254 AGK-RFLLVLDDVWDGDYIKWEPFYRCLKKGLHGSKILITTRKE 296 (938)
Q Consensus 254 ~~~-~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtr~~ 296 (938)
.+. .-+||+|.+...+....+. ...+.+ .|-.||+|-+..
T Consensus 86 ~~~~~dvViIDEaQ~l~~~~ve~-l~~L~~--~gi~Vil~Gl~~ 126 (223)
T 2b8t_A 86 FNDETKVIGIDEVQFFDDRICEV-ANILAE--NGFVVIISGLDK 126 (223)
T ss_dssp SCTTCCEEEECSGGGSCTHHHHH-HHHHHH--TTCEEEEECCSB
T ss_pred hCCCCCEEEEecCccCcHHHHHH-HHHHHh--CCCeEEEEeccc
Confidence 434 4499999996543232222 333333 377899999854
No 251
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=96.48 E-value=0.0036 Score=59.39 Aligned_cols=117 Identities=20% Similarity=0.115 Sum_probs=64.7
Q ss_pred EEEEEEccCCChHHHHHHHHhhhhhhhcccCeEEEEEeCC---CCCHHHHHHHHHHHh---cCCC-CCCC-------cHH
Q 002308 178 HIISIVGMGGIGKTTLAQLACNHVEVKREFDKTLWVCVSE---TFDEFRIAKAMLEAL---TGST-SNLN-------ALQ 243 (938)
Q Consensus 178 ~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~---~~~~~~~~~~i~~~l---~~~~-~~~~-------~~~ 243 (938)
..|.|++-.|.||||+|-..+-.. ....+ .+.++.... ......++..+.-.+ +... .... ...
T Consensus 29 g~i~v~tG~GkGKTTaA~GlalRA-~g~G~-rV~~vQF~Kg~~~~gE~~~l~~L~v~~~~~g~gf~~~~~~~~~~~~~a~ 106 (196)
T 1g5t_A 29 GIIIVFTGNGKGKTTAAFGTAARA-VGHGK-NVGVVQFIKGTWPNGERNLLEPHGVEFQVMATGFTWETQNREADTAACM 106 (196)
T ss_dssp CCEEEEESSSSCHHHHHHHHHHHH-HHTTC-CEEEEESSCCSSCCHHHHHHGGGTCEEEECCTTCCCCGGGHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHH-HHCCC-eEEEEEeeCCCCCccHHHHHHhCCcEEEEcccccccCCCCcHHHHHHHH
Confidence 466777777799999998887742 22223 344553332 223333433331000 0000 0011 112
Q ss_pred HHHHHHHHHhcCceE-EEEEecCCC---CCccChhHHHHhhhCCCCCcEEEEEcCCh
Q 002308 244 SLLISIDESIAGKRF-LLVLDDVWD---GDYIKWEPFYRCLKKGLHGSKILITTRKE 296 (938)
Q Consensus 244 ~~~~~l~~~l~~~~~-LlVlDdv~~---~~~~~~~~l~~~l~~~~~gs~ilvTtr~~ 296 (938)
......++.+.+.+| |||||++.. ......+++...+........||+|+|..
T Consensus 107 ~~l~~a~~~l~~~~yDlvILDEi~~al~~g~l~~~ev~~~l~~Rp~~~~vIlTGr~a 163 (196)
T 1g5t_A 107 AVWQHGKRMLADPLLDMVVLDELTYMVAYDYLPLEEVISALNARPGHQTVIITGRGC 163 (196)
T ss_dssp HHHHHHHHHTTCTTCSEEEEETHHHHHHTTSSCHHHHHHHHHTSCTTCEEEEECSSC
T ss_pred HHHHHHHHHHhcCCCCEEEEeCCCccccCCCCCHHHHHHHHHhCcCCCEEEEECCCC
Confidence 223334555555444 999999832 23445677788887766777899999985
No 252
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=96.42 E-value=0.0029 Score=60.33 Aligned_cols=112 Identities=13% Similarity=0.074 Sum_probs=59.9
Q ss_pred ccCceeEEeccCC-CCCCCCchhhHHHHHhccCCCeeEEecCCCCCCcc----cCccccccCCCCeeeecCCccc-----
Q 002308 536 RAKRIRSLLIEWP-EFGHSSLNGEILEELFRESTSLRALDFPSFYLPLE----IPRNIEKLVHLRYLNLSDQKIK----- 605 (938)
Q Consensus 536 ~~~~Lr~L~l~~~-~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~n~~~~~----lp~~~~~l~~L~~L~L~~~~i~----- 605 (938)
.-+.|+.|++.++ .++... ...+...+...+.|+.|+|++|.+... +.+.+..-+.|++|+|++|.|+
T Consensus 39 ~n~~L~~L~L~~nn~igd~g--a~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ 116 (197)
T 1pgv_A 39 DDTDLKEVNINNMKRVSKER--IRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLA 116 (197)
T ss_dssp TCSSCCEEECTTCCSSCHHH--HHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHH
T ss_pred cCCCccEEECCCCCCCCHHH--HHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHH
Confidence 4456666766653 432211 112344456667777777777773321 3333444566777777777765
Q ss_pred cccccccCCCCccEEEcCCCCC--cc-----cccccccccCccceeecCCC
Q 002308 606 KLPETLCELYNLEKLDISGCSD--LR-----ELPKGIGKLINMKHLLNSGT 649 (938)
Q Consensus 606 ~lp~~i~~l~~L~~L~l~~~~~--l~-----~lp~~i~~l~~L~~L~l~~~ 649 (938)
.+-+.+..-+.|++|+|++|.. ++ .+...+..-+.|+.|+++.+
T Consensus 117 ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~ 167 (197)
T 1pgv_A 117 RLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFA 167 (197)
T ss_dssp HHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCC
T ss_pred HHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCC
Confidence 3444555556677777765431 11 12333444455666666544
No 253
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=96.29 E-value=0.01 Score=59.75 Aligned_cols=91 Identities=19% Similarity=0.174 Sum_probs=53.6
Q ss_pred CeEEEEEEccCCChHHHHHHHHhhhhhhhc----ccCeEEEEEeCCCCCHHHHHHHHHHHhcCCC---------CCCCcH
Q 002308 176 GLHIISIVGMGGIGKTTLAQLACNHVEVKR----EFDKTLWVCVSETFDEFRIAKAMLEALTGST---------SNLNAL 242 (938)
Q Consensus 176 ~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~----~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~---------~~~~~~ 242 (938)
...++.|+|++|+|||||+..++....... .-..++|+.....++...+. ++++.++... ....+.
T Consensus 23 ~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~~~-~~~~~~g~~~~~~~~~~~~~~~~~~ 101 (243)
T 1n0w_A 23 TGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERLL-AVAERYGLSGSDVLDNVAYARAFNT 101 (243)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHH-HHHHHTTCCHHHHHHTEEEEECCSH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCCCcCHHHHH-HHHHHcCCCHHHHhhCeEEEecCCH
Confidence 346899999999999999999887421111 12568888877755554433 3344443221 011122
Q ss_pred HH---HHHHHHHHhc-CceEEEEEecCCC
Q 002308 243 QS---LLISIDESIA-GKRFLLVLDDVWD 267 (938)
Q Consensus 243 ~~---~~~~l~~~l~-~~~~LlVlDdv~~ 267 (938)
.+ ....+.+.+. .+.-+||+|.+..
T Consensus 102 ~~~~~~~~~~~~~~~~~~~~lliiD~~~~ 130 (243)
T 1n0w_A 102 DHQTQLLYQASAMMVESRYALLIVDSATA 130 (243)
T ss_dssp HHHHHHHHHHHHHHHHSCEEEEEEETSSG
T ss_pred HHHHHHHHHHHHHHhcCCceEEEEeCchH
Confidence 22 2223444443 4677999999854
No 254
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=96.20 E-value=0.019 Score=58.67 Aligned_cols=85 Identities=11% Similarity=0.138 Sum_probs=55.0
Q ss_pred EEEEEEccCCChHHHHHHHHhhhhhhhcccCeEEEEEeCCCCCHHHHHHHHHHHhcCCCC-----CCCcHHHH-HHHHHH
Q 002308 178 HIISIVGMGGIGKTTLAQLACNHVEVKREFDKTLWVCVSETFDEFRIAKAMLEALTGSTS-----NLNALQSL-LISIDE 251 (938)
Q Consensus 178 ~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~-----~~~~~~~~-~~~l~~ 251 (938)
.++-|+|++|+||||||.+++........=..++|++..+.++.. .+++++.... ...+.++. ...+..
T Consensus 29 GiteI~G~pGsGKTtL~Lq~~~~~~~~g~g~~vlyId~E~s~~~~-----ra~~lGvd~d~llv~~~~~~E~~~l~i~~~ 103 (333)
T 3io5_A 29 GLLILAGPSKSFKSNFGLTMVSSYMRQYPDAVCLFYDSEFGITPA-----YLRSMGVDPERVIHTPVQSLEQLRIDMVNQ 103 (333)
T ss_dssp EEEEEEESSSSSHHHHHHHHHHHHHHHCTTCEEEEEESSCCCCHH-----HHHHTTCCGGGEEEEECSBHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEeccchhhHH-----HHHHhCCCHHHeEEEcCCCHHHHHHHHHHH
Confidence 378999999999999999988743221112468899988877754 2566664322 12345554 333333
Q ss_pred H--h-cCceEEEEEecCCC
Q 002308 252 S--I-AGKRFLLVLDDVWD 267 (938)
Q Consensus 252 ~--l-~~~~~LlVlDdv~~ 267 (938)
. + .++.-+||+|-+..
T Consensus 104 l~~i~~~~~~lvVIDSI~a 122 (333)
T 3io5_A 104 LDAIERGEKVVVFIDSLGN 122 (333)
T ss_dssp HHTCCTTCCEEEEEECSTT
T ss_pred HHHhhccCceEEEEecccc
Confidence 2 2 35678999999854
No 255
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=96.18 E-value=0.014 Score=61.69 Aligned_cols=85 Identities=25% Similarity=0.230 Sum_probs=55.5
Q ss_pred CeEEEEEEccCCChHHHHHHHHhhhhhhhcccCeEEEEEeCCCCCHHHHHHHHHHHhcCCC-----CCCCcHHHHHHHHH
Q 002308 176 GLHIISIVGMGGIGKTTLAQLACNHVEVKREFDKTLWVCVSETFDEFRIAKAMLEALTGST-----SNLNALQSLLISID 250 (938)
Q Consensus 176 ~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~-----~~~~~~~~~~~~l~ 250 (938)
...++.|+|++|+||||||..++.... ..=..++|++....++.. .++.++... ....+.++....+.
T Consensus 60 ~G~i~~I~GppGsGKSTLal~la~~~~--~~gg~VlyId~E~s~~~~-----ra~rlgv~~~~l~i~~~~~~e~~l~~~~ 132 (356)
T 3hr8_A 60 RGRIVEIFGQESSGKTTLALHAIAEAQ--KMGGVAAFIDAEHALDPV-----YAKNLGVDLKSLLISQPDHGEQALEIVD 132 (356)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHHHHHH--HTTCCEEEEESSCCCCHH-----HHHHHTCCGGGCEEECCSSHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHH--hcCCeEEEEecccccchH-----HHHHcCCchhhhhhhhccCHHHHHHHHH
Confidence 457999999999999999999988532 222357888887766654 444454321 12234555555555
Q ss_pred HHhc-CceEEEEEecCCC
Q 002308 251 ESIA-GKRFLLVLDDVWD 267 (938)
Q Consensus 251 ~~l~-~~~~LlVlDdv~~ 267 (938)
..++ .+.-++|+|.+..
T Consensus 133 ~l~~~~~~dlvVIDSi~~ 150 (356)
T 3hr8_A 133 ELVRSGVVDLIVVDSVAA 150 (356)
T ss_dssp HHHHTSCCSEEEEECTTT
T ss_pred HHhhhcCCCeEEehHhhh
Confidence 5443 4455899998743
No 256
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=96.05 E-value=0.02 Score=57.03 Aligned_cols=115 Identities=17% Similarity=0.067 Sum_probs=61.9
Q ss_pred eEEEEEEccCCChHHHHHHHHhhhhhhhcccCeEEEEEeCCCCCHHHHHHHHHHHhcCCCC-------------------
Q 002308 177 LHIISIVGMGGIGKTTLAQLACNHVEVKREFDKTLWVCVSETFDEFRIAKAMLEALTGSTS------------------- 237 (938)
Q Consensus 177 ~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~------------------- 237 (938)
..+++|.|++|+|||||+..++...... =..++|+.... ....+...+. .++....
T Consensus 23 G~~~~i~G~~GsGKTtl~~~l~~~~~~~--~~~v~~~~~~~--~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (235)
T 2w0m_A 23 GFFIALTGEPGTGKTIFSLHFIAKGLRD--GDPCIYVTTEE--SRDSIIRQAK-QFNWDFEEYIEKKLIIIDALMKEKED 97 (235)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHHHHHHH--TCCEEEEESSS--CHHHHHHHHH-HTTCCCGGGBTTTEEEEECCC----C
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHHHC--CCeEEEEEccc--CHHHHHHHHH-HhcchHHHHhhCCEEEEeccccccCc
Confidence 4689999999999999999998643221 13466665433 3444443332 3321100
Q ss_pred ----CCCcHHHHHHHHHHHhc---CceEEEEEecCCCC---CccChhHHHHhhhC--CCCCcEEEEEcCCh
Q 002308 238 ----NLNALQSLLISIDESIA---GKRFLLVLDDVWDG---DYIKWEPFYRCLKK--GLHGSKILITTRKE 296 (938)
Q Consensus 238 ----~~~~~~~~~~~l~~~l~---~~~~LlVlDdv~~~---~~~~~~~l~~~l~~--~~~gs~ilvTtr~~ 296 (938)
...+..+....+...+. -++.++|+|..... +......+...+.. ...|..||++|...
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~~~~d~~~~~~~~~~l~~~~~~~~~~vi~~~h~~ 168 (235)
T 2w0m_A 98 QWSLVNLTPEELVNKVIEAKQKLGYGKARLVIDSVSALFLDKPAMARKISYYLKRVLNKWNFTIYATSQYA 168 (235)
T ss_dssp TTBCSSCCHHHHHHHHHHHHHHHCSSCEEEEEETGGGGSSSCGGGHHHHHHHHHHHHHHTTEEEEEEEC--
T ss_pred eeeecCCCHHHHHHHHHHHHHhhCCCceEEEEECchHhhcCCHHHHHHHHHHHHHHHHhCCCeEEEEeccC
Confidence 01134454444444332 22349999998532 22223344444332 12577788888754
No 257
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=95.97 E-value=0.032 Score=59.15 Aligned_cols=58 Identities=19% Similarity=0.308 Sum_probs=40.8
Q ss_pred CCeEEEEEEccCCChHHHHHHHHhhhhhhhc----ccCeEEEEEeCCCCCHHHHHHHHHHHhc
Q 002308 175 KGLHIISIVGMGGIGKTTLAQLACNHVEVKR----EFDKTLWVCVSETFDEFRIAKAMLEALT 233 (938)
Q Consensus 175 ~~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~----~f~~~~wv~~~~~~~~~~~~~~i~~~l~ 233 (938)
+...++.|+|.+|+||||||..++....... .-..++|++....++...+.. ++..++
T Consensus 120 ~~G~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~E~~~~~~~l~~-~~~~~g 181 (343)
T 1v5w_A 120 ESMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTENTFRPDRLRD-IADRFN 181 (343)
T ss_dssp CSSEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSSCCCHHHHHH-HHHHTT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHHH-HHHHcC
Confidence 3567999999999999999999887421211 124688999888777766543 344443
No 258
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=95.89 E-value=0.027 Score=59.97 Aligned_cols=85 Identities=21% Similarity=0.178 Sum_probs=55.4
Q ss_pred CeEEEEEEccCCChHHHHHHHHhhhhhhhcccCeEEEEEeCCCCCHHHHHHHHHHHhcCCCC-----CCCcHHHHHHHHH
Q 002308 176 GLHIISIVGMGGIGKTTLAQLACNHVEVKREFDKTLWVCVSETFDEFRIAKAMLEALTGSTS-----NLNALQSLLISID 250 (938)
Q Consensus 176 ~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~-----~~~~~~~~~~~l~ 250 (938)
...++.|+|.+|+||||||..++.... ..=..++|++....++.. .++.++.... ...+.++....+.
T Consensus 73 ~G~li~I~G~pGsGKTtlal~la~~~~--~~g~~vlyi~~E~s~~~~-----~a~~~g~d~~~l~i~~~~~~e~~l~~l~ 145 (366)
T 1xp8_A 73 RGRITEIYGPESGGKTTLALAIVAQAQ--KAGGTCAFIDAEHALDPV-----YARALGVNTDELLVSQPDNGEQALEIME 145 (366)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHH--HTTCCEEEEESSCCCCHH-----HHHHTTCCGGGCEEECCSSHHHHHHHHH
T ss_pred CCcEEEEEcCCCCChHHHHHHHHHHHH--HCCCeEEEEECCCChhHH-----HHHHcCCCHHHceeecCCcHHHHHHHHH
Confidence 345889999999999999999887432 222468999988776654 2344443211 1234566666666
Q ss_pred HHhc-CceEEEEEecCCC
Q 002308 251 ESIA-GKRFLLVLDDVWD 267 (938)
Q Consensus 251 ~~l~-~~~~LlVlDdv~~ 267 (938)
+..+ .+.-+||+|.+..
T Consensus 146 ~l~~~~~~~lVVIDsl~~ 163 (366)
T 1xp8_A 146 LLVRSGAIDVVVVDSVAA 163 (366)
T ss_dssp HHHTTTCCSEEEEECTTT
T ss_pred HHHhcCCCCEEEEeChHH
Confidence 5554 3445899999843
No 259
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=95.89 E-value=0.044 Score=51.77 Aligned_cols=23 Identities=39% Similarity=0.546 Sum_probs=20.5
Q ss_pred EEEEEccCCChHHHHHHHHhhhh
Q 002308 179 IISIVGMGGIGKTTLAQLACNHV 201 (938)
Q Consensus 179 vv~i~G~~GiGKTtLa~~v~~~~ 201 (938)
.++|+|+.|+|||||++.++...
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l 24 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERL 24 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999998753
No 260
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=95.78 E-value=0.019 Score=60.59 Aligned_cols=57 Identities=23% Similarity=0.352 Sum_probs=40.4
Q ss_pred CeEEEEEEccCCChHHHHHHHHhhhhhhhc---------cc-----CeEEEEEeCCCCCHHHHHHHHHHHhc
Q 002308 176 GLHIISIVGMGGIGKTTLAQLACNHVEVKR---------EF-----DKTLWVCVSETFDEFRIAKAMLEALT 233 (938)
Q Consensus 176 ~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~---------~f-----~~~~wv~~~~~~~~~~~~~~i~~~l~ 233 (938)
...++.|+|.+|+|||++|..++....... .. ..++|++....++.+.+.+ +++.++
T Consensus 97 ~g~i~~i~G~~gsGKT~la~~la~~~~l~~~~~~~~~~~~~gg~~~~~v~yi~~e~~~~~~~l~~-~~~~~g 167 (322)
T 2i1q_A 97 SQSVTEFAGVFGSGKTQIMHQSCVNLQNPEFLFYDEEAVSKGEVAQPKAVYIDTEGTFRPERIMQ-MAEHAG 167 (322)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHHHHTTCGGGEECCTTTSCTTTTSSEEEEEEESSSCCCHHHHHH-HHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhccccccccccccccCCCCCceEEEEECCCCCCHHHHHH-HHHHcC
Confidence 457999999999999999999886421111 11 4688999888877776654 344444
No 261
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=95.73 E-value=0.033 Score=59.02 Aligned_cols=85 Identities=21% Similarity=0.176 Sum_probs=54.7
Q ss_pred CeEEEEEEccCCChHHHHHHHHhhhhhhhcccCeEEEEEeCCCCCHHHHHHHHHHHhcCCCC-----CCCcHHHHHHHHH
Q 002308 176 GLHIISIVGMGGIGKTTLAQLACNHVEVKREFDKTLWVCVSETFDEFRIAKAMLEALTGSTS-----NLNALQSLLISID 250 (938)
Q Consensus 176 ~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~-----~~~~~~~~~~~l~ 250 (938)
...++.|+|++|+||||||..++.... ..=..++|++....++.. .++.++.... ...+.++....+.
T Consensus 60 ~G~iv~I~G~pGsGKTtLal~la~~~~--~~g~~vlyi~~E~~~~~~-----~a~~lG~~~~~l~i~~~~~~e~~l~~~~ 132 (349)
T 2zr9_A 60 RGRVIEIYGPESSGKTTVALHAVANAQ--AAGGIAAFIDAEHALDPE-----YAKKLGVDTDSLLVSQPDTGEQALEIAD 132 (349)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHH--HTTCCEEEEESSCCCCHH-----HHHHTTCCGGGCEEECCSSHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH--hCCCeEEEEECCCCcCHH-----HHHHcCCCHHHeEEecCCCHHHHHHHHH
Confidence 456899999999999999999887432 222468899988766643 2444443211 1234555555555
Q ss_pred HHhc-CceEEEEEecCCC
Q 002308 251 ESIA-GKRFLLVLDDVWD 267 (938)
Q Consensus 251 ~~l~-~~~~LlVlDdv~~ 267 (938)
.... .+.-+||+|.+..
T Consensus 133 ~l~~~~~~~lIVIDsl~~ 150 (349)
T 2zr9_A 133 MLVRSGALDIIVIDSVAA 150 (349)
T ss_dssp HHHTTTCCSEEEEECGGG
T ss_pred HHHhcCCCCEEEEcChHh
Confidence 4443 3456999999843
No 262
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=95.72 E-value=0.031 Score=58.89 Aligned_cols=57 Identities=28% Similarity=0.314 Sum_probs=40.1
Q ss_pred CeEEEEEEccCCChHHHHHHHHhhhhhhhcc----cCeEEEEEeCCCCCHHHHHHHHHHHhc
Q 002308 176 GLHIISIVGMGGIGKTTLAQLACNHVEVKRE----FDKTLWVCVSETFDEFRIAKAMLEALT 233 (938)
Q Consensus 176 ~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~----f~~~~wv~~~~~~~~~~~~~~i~~~l~ 233 (938)
...++.|+|.+|+||||+|..++........ -..++|++....++...+.. +++.++
T Consensus 106 ~G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~~~~~~~l~~-~~~~~g 166 (324)
T 2z43_A 106 TRTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEGTFRWERIEN-MAKALG 166 (324)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCHHHHHH-HHHHTT
T ss_pred CCcEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHHH-HHHHhC
Confidence 3468999999999999999998874211111 24689999888777766553 345544
No 263
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=95.39 E-value=0.037 Score=58.68 Aligned_cols=84 Identities=21% Similarity=0.181 Sum_probs=52.8
Q ss_pred CeEEEEEEccCCChHHHHHHHHhhhhhhhcccCeEEEEEeCCCCCHHHHHHHHHHHhcCCCC-----CCCcHHHHHHHHH
Q 002308 176 GLHIISIVGMGGIGKTTLAQLACNHVEVKREFDKTLWVCVSETFDEFRIAKAMLEALTGSTS-----NLNALQSLLISID 250 (938)
Q Consensus 176 ~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~-----~~~~~~~~~~~l~ 250 (938)
..+++.|.|.+|+||||||..++.... ..=..++|++....++.. .+..++.... .....++....+.
T Consensus 62 ~G~ii~I~G~pGsGKTtLal~la~~~~--~~g~~vlyid~E~s~~~~-----~a~~~g~~~~~l~i~~~~~~e~~~~~~~ 134 (356)
T 1u94_A 62 MGRIVEIYGPESSGKTTLTLQVIAAAQ--REGKTCAFIDAEHALDPI-----YARKLGVDIDNLLCSQPDTGEQALEICD 134 (356)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHHHHH--HTTCCEEEEESSCCCCHH-----HHHHTTCCGGGCEEECCSSHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH--HCCCeEEEEeCCCCccHH-----HHHHcCCChhheeeeCCCCHHHHHHHHH
Confidence 346899999999999999999887432 222368899988777643 2344443211 1123444444444
Q ss_pred HHhc-CceEEEEEecCC
Q 002308 251 ESIA-GKRFLLVLDDVW 266 (938)
Q Consensus 251 ~~l~-~~~~LlVlDdv~ 266 (938)
...+ .+.-+||+|.+.
T Consensus 135 ~l~~~~~~~lVVIDsl~ 151 (356)
T 1u94_A 135 ALARSGAVDVIVVDSVA 151 (356)
T ss_dssp HHHHHTCCSEEEEECGG
T ss_pred HHHhccCCCEEEEcCHH
Confidence 4332 445589999874
No 264
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=95.29 E-value=0.017 Score=56.10 Aligned_cols=43 Identities=26% Similarity=0.285 Sum_probs=33.3
Q ss_pred chhhHHHHHHHHhccCcccCCCeEEEEEEccCCChHHHHHHHHhhh
Q 002308 155 RVGERNALLSMLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNH 200 (938)
Q Consensus 155 r~~~~~~l~~~l~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~v~~~ 200 (938)
|++.++.+.+.+.... .....+|+|.|..|+||||+++.+...
T Consensus 3 ~~~~~~~l~~~~~~~~---~~~~~~i~i~G~~GsGKstl~~~l~~~ 45 (201)
T 1rz3_A 3 LRDRIDFLCKTILAIK---TAGRLVLGIDGLSRSGKTTLANQLSQT 45 (201)
T ss_dssp HHHHHHHHHHHHHTSC---CSSSEEEEEEECTTSSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhc---cCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4556777777776532 235689999999999999999998873
No 265
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=95.29 E-value=0.04 Score=56.90 Aligned_cols=86 Identities=14% Similarity=0.131 Sum_probs=44.9
Q ss_pred CeEEEEEEccCCChHHHHHHHHhhhhhhhcccCeEEEEEeCC-CCCHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHhc
Q 002308 176 GLHIISIVGMGGIGKTTLAQLACNHVEVKREFDKTLWVCVSE-TFDEFRIAKAMLEALTGSTSNLNALQSLLISIDESIA 254 (938)
Q Consensus 176 ~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~-~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~ 254 (938)
...+++++|.+|+||||++..++........ ..+.++.... .....+.+....+..+.......+...+...+. .+
T Consensus 104 ~g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G-~~V~lv~~D~~r~~a~eqL~~~~~~~gl~~~~~~~~~~l~~al~-~~- 180 (296)
T 2px0_A 104 HSKYIVLFGSTGAGKTTTLAKLAAISMLEKH-KKIAFITTDTYRIAAVEQLKTYAELLQAPLEVCYTKEEFQQAKE-LF- 180 (296)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHHHHHHTTC-CCEEEEECCCSSTTHHHHHHHHHTTTTCCCCBCSSHHHHHHHHH-HG-
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcC-CEEEEEecCcccchHHHHHHHHHHhcCCCeEecCCHHHHHHHHH-Hh-
Confidence 3469999999999999999999874332122 2345554432 122333333333333322111122333333343 23
Q ss_pred CceEEEEEec
Q 002308 255 GKRFLLVLDD 264 (938)
Q Consensus 255 ~~~~LlVlDd 264 (938)
.+.=++|+|-
T Consensus 181 ~~~dlvIiDT 190 (296)
T 2px0_A 181 SEYDHVFVDT 190 (296)
T ss_dssp GGSSEEEEEC
T ss_pred cCCCEEEEeC
Confidence 3345788894
No 266
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=95.17 E-value=0.017 Score=55.00 Aligned_cols=92 Identities=12% Similarity=0.114 Sum_probs=64.4
Q ss_pred hhHHHHHhccCCCeeEEecCCC-CCCcc-----cCccccccCCCCeeeecCCccc-----cccccccCCCCccEEEcCCC
Q 002308 557 GEILEELFRESTSLRALDFPSF-YLPLE-----IPRNIEKLVHLRYLNLSDQKIK-----KLPETLCELYNLEKLDISGC 625 (938)
Q Consensus 557 ~~~~~~~~~~~~~Lr~L~L~~n-~~~~~-----lp~~~~~l~~L~~L~L~~~~i~-----~lp~~i~~l~~L~~L~l~~~ 625 (938)
...+..++..-+.|+.|+|++| . ++. +-+.+..-..|+.|+|++|.|. .+.+.+..-+.|++|+|++|
T Consensus 30 ~~~l~~ll~~n~~L~~L~L~~nn~-igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N 108 (197)
T 1pgv_A 30 ESCINRLREDDTDLKEVNINNMKR-VSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESN 108 (197)
T ss_dssp HHHHHHHHTTCSSCCEEECTTCCS-SCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSS
T ss_pred HHHHHHHHhcCCCccEEECCCCCC-CCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCC
Confidence 3345666788889999999986 5 332 3445566678999999999987 45556667788999999988
Q ss_pred CCcc----cccccccccCccceeecCCC
Q 002308 626 SDLR----ELPKGIGKLINMKHLLNSGT 649 (938)
Q Consensus 626 ~~l~----~lp~~i~~l~~L~~L~l~~~ 649 (938)
.+.. .+-..+..-+.|++|+|++|
T Consensus 109 ~Ig~~Ga~ala~aL~~N~tL~~L~L~n~ 136 (197)
T 1pgv_A 109 FLTPELLARLLRSTLVTQSIVEFKADNQ 136 (197)
T ss_dssp BCCHHHHHHHHHHTTTTCCCSEEECCCC
T ss_pred cCCHHHHHHHHHHHhhCCceeEEECCCC
Confidence 8432 23344555566777777654
No 267
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=95.10 E-value=0.1 Score=51.84 Aligned_cols=25 Identities=24% Similarity=0.365 Sum_probs=21.9
Q ss_pred CeEEEEEEccCCChHHHHHHHHhhh
Q 002308 176 GLHIISIVGMGGIGKTTLAQLACNH 200 (938)
Q Consensus 176 ~~~vv~i~G~~GiGKTtLa~~v~~~ 200 (938)
...+++|+|+.|+|||||++.++.-
T Consensus 30 ~Ge~~~i~G~nGsGKSTLl~~l~Gl 54 (237)
T 2cbz_A 30 EGALVAVVGQVGCGKSSLLSALLAE 54 (237)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 3458999999999999999999874
No 268
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=95.07 E-value=0.077 Score=55.05 Aligned_cols=39 Identities=18% Similarity=0.252 Sum_probs=28.1
Q ss_pred CeEEEEEEccCCChHHHHHHHHhhhhhhhcccC-eEEEEEeC
Q 002308 176 GLHIISIVGMGGIGKTTLAQLACNHVEVKREFD-KTLWVCVS 216 (938)
Q Consensus 176 ~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~-~~~wv~~~ 216 (938)
...+++|.|++|+|||||+..++...... -. .++|+...
T Consensus 34 ~G~~~~i~G~~G~GKTTl~~~ia~~~~~~--~G~~v~~~~~e 73 (296)
T 1cr0_A 34 GGEVIMVTSGSGMGKSTFVRQQALQWGTA--MGKKVGLAMLE 73 (296)
T ss_dssp TTCEEEEEESTTSSHHHHHHHHHHHHHHT--SCCCEEEEESS
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHHHHH--cCCeEEEEeCc
Confidence 34689999999999999999988853222 12 46666543
No 269
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=94.98 E-value=0.066 Score=55.62 Aligned_cols=46 Identities=20% Similarity=0.140 Sum_probs=34.0
Q ss_pred eecchhhHHHHHHHHhccCcccCCCeEEEEEEccCCChHHHHHHHHhh
Q 002308 152 ICGRVGERNALLSMLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACN 199 (938)
Q Consensus 152 ~vGr~~~~~~l~~~l~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~v~~ 199 (938)
++|....+..+...+..... .....+|+|.|+.|+||||+++.+..
T Consensus 69 ~~~~~~~l~~~~~~~l~~~~--~~~p~iigI~GpsGSGKSTl~~~L~~ 114 (321)
T 3tqc_A 69 YVTARQTLQQATYQFLGKPE--PKVPYIIGIAGSVAVGKSTTSRVLKA 114 (321)
T ss_dssp HHHHHHHHHHHHHHHHTCCC--CCCCEEEEEECCTTSSHHHHHHHHHH
T ss_pred hhcchHHHHHHHHHHhccCC--CCCCEEEEEECCCCCCHHHHHHHHHH
Confidence 45555566666665554432 44678999999999999999998876
No 270
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=94.97 E-value=0.18 Score=52.69 Aligned_cols=53 Identities=13% Similarity=0.134 Sum_probs=39.2
Q ss_pred CeEEEEEEccCCChHHHHHHHHhhhhhhhcccCeEEEEEeCCCCCHHHHHHHHHHHh
Q 002308 176 GLHIISIVGMGGIGKTTLAQLACNHVEVKREFDKTLWVCVSETFDEFRIAKAMLEAL 232 (938)
Q Consensus 176 ~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l 232 (938)
...++.|.|.+|+||||+|..++.....++ ..++|++.. .+..++...+....
T Consensus 67 ~G~l~li~G~pG~GKTtl~l~ia~~~a~~g--~~vl~~slE--~s~~~l~~R~~~~~ 119 (315)
T 3bh0_A 67 RRNFVLIAARPSMGKTAFALKQAKNMSDND--DVVNLHSLE--MGKKENIKRLIVTA 119 (315)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHHHHHTTT--CEEEEEESS--SCHHHHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHHHcC--CeEEEEECC--CCHHHHHHHHHHHH
Confidence 456899999999999999999887533222 567777755 56777777776654
No 271
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=94.85 E-value=0.047 Score=57.30 Aligned_cols=52 Identities=17% Similarity=0.067 Sum_probs=33.6
Q ss_pred HHHHHHhccCcccCCCeEEEEEEccCCChHHHHHHHHhhhhhhh-cccCeEEEEEeCCC
Q 002308 161 ALLSMLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNHVEVK-REFDKTLWVCVSET 218 (938)
Q Consensus 161 ~l~~~l~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~v~~~~~~~-~~f~~~~wv~~~~~ 218 (938)
++++.+..-. ....++|+|.+|+|||||++.+.+..... ..+. ++++-+++.
T Consensus 163 raID~~~pi~-----rGQr~~IvG~sG~GKTtLl~~Iar~i~~~~~~v~-~I~~lIGER 215 (422)
T 3ice_A 163 RVLDLASPIG-----RGQRGLIVAPPKAGKTMLLQNIAQSIAYNHPDCV-LMVLLIDER 215 (422)
T ss_dssp HHHHHHSCCB-----TTCEEEEECCSSSSHHHHHHHHHHHHHHHCTTSE-EEEEEESSC
T ss_pred eeeeeeeeec-----CCcEEEEecCCCCChhHHHHHHHHHHhhcCCCee-EEEEEecCC
Confidence 4555555432 34588999999999999999988743222 1233 445666653
No 272
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=94.80 E-value=0.02 Score=63.72 Aligned_cols=43 Identities=19% Similarity=0.156 Sum_probs=36.1
Q ss_pred CceecchhhHHHHHHHHhccCcccCCCeEEEEEEccCCChHHHHHHHHhhh
Q 002308 150 EEICGRVGERNALLSMLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNH 200 (938)
Q Consensus 150 ~~~vGr~~~~~~l~~~l~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~v~~~ 200 (938)
..++|++..++.+...+... .-|.|+|++|+|||+||+.+++.
T Consensus 22 ~~ivGq~~~i~~l~~al~~~--------~~VLL~GpPGtGKT~LAraLa~~ 64 (500)
T 3nbx_X 22 KGLYERSHAIRLCLLAALSG--------ESVFLLGPPGIAKSLIARRLKFA 64 (500)
T ss_dssp TTCSSCHHHHHHHHHHHHHT--------CEEEEECCSSSSHHHHHHHGGGG
T ss_pred hhhHHHHHHHHHHHHHHhcC--------CeeEeecCchHHHHHHHHHHHHH
Confidence 34889999998888887643 35899999999999999999884
No 273
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=94.77 E-value=0.22 Score=49.20 Aligned_cols=24 Identities=25% Similarity=0.475 Sum_probs=21.5
Q ss_pred eEEEEEEccCCChHHHHHHHHhhh
Q 002308 177 LHIISIVGMGGIGKTTLAQLACNH 200 (938)
Q Consensus 177 ~~vv~i~G~~GiGKTtLa~~v~~~ 200 (938)
..+++|+|+.|+|||||.+.++.-
T Consensus 34 Ge~~~i~G~nGsGKSTLl~~l~Gl 57 (229)
T 2pze_A 34 GQLLAVAGSTGAGKTSLLMMIMGE 57 (229)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTTS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 458999999999999999999874
No 274
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=94.74 E-value=0.066 Score=58.18 Aligned_cols=88 Identities=19% Similarity=0.285 Sum_probs=49.1
Q ss_pred EEEEEEccCCChHHHHHHHHhhhhhhhcccCeEEEEEeCCCC-CHHHHHHHHHHHhc--------CCCCCCCcHHH----
Q 002308 178 HIISIVGMGGIGKTTLAQLACNHVEVKREFDKTLWVCVSETF-DEFRIAKAMLEALT--------GSTSNLNALQS---- 244 (938)
Q Consensus 178 ~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~i~~~l~--------~~~~~~~~~~~---- 244 (938)
+.++|+|.+|+|||||++.+........ -+..+++.+++.. ...+++.++...-. ....+......
T Consensus 152 q~~~i~G~sGvGKTtL~~~l~~~~~~~~-~~i~V~~~iGerttev~el~~~l~~~~~l~~tvvv~~~~~d~pg~r~~~~~ 230 (473)
T 1sky_E 152 GKIGLFGGAGVGKTVLIQELIHNIAQEH-GGISVFAGVGERTREGNDLYHEMKDSGVISKTAMVFGQMNEPPGARMRVAL 230 (473)
T ss_dssp CEEEEECCSSSCHHHHHHHHHHHHHHHT-CCCEEEEEESSCHHHHHHHHHHHHHTSGGGGEEEEEECTTSCHHHHHHHHH
T ss_pred CEEEEECCCCCCccHHHHHHHhhhhhcc-CcEEEEeeeccCchHHHHHHHHhhhcCCcceeEEEEEcCCCCHHHHHHHHH
Confidence 3689999999999999999988533222 2445666666543 23344444433200 00111111111
Q ss_pred HHHHHHHHh---cCceEEEEEecCC
Q 002308 245 LLISIDESI---AGKRFLLVLDDVW 266 (938)
Q Consensus 245 ~~~~l~~~l---~~~~~LlVlDdv~ 266 (938)
..-.+.+++ +++++|+++||+.
T Consensus 231 ~~ltiAEyFrd~~G~~VLl~~D~it 255 (473)
T 1sky_E 231 TGLTMAEYFRDEQGQDGLLFIDNIF 255 (473)
T ss_dssp HHHHHHHHHHHHSCCEEEEEEECTH
T ss_pred HHHHHHHHHHHhcCCcEEEEeccHH
Confidence 011223332 5889999999993
No 275
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=94.72 E-value=0.041 Score=64.53 Aligned_cols=159 Identities=16% Similarity=0.134 Sum_probs=78.6
Q ss_pred CCCceecchhhHHHHHHHHhccCc-------ccCCCeEEEEEEccCCChHHHHHHHHhhhhhhhcccCeEEEEEeCCCCC
Q 002308 148 DEEEICGRVGERNALLSMLLCESS-------EQQKGLHIISIVGMGGIGKTTLAQLACNHVEVKREFDKTLWVCVSETFD 220 (938)
Q Consensus 148 ~~~~~vGr~~~~~~l~~~l~~~~~-------~~~~~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~ 220 (938)
.-..+.|.++..+++.+.+.-+-. .+....+-|.++|++|.|||.+|+++++. .... ++.++.
T Consensus 475 ~w~diggl~~~k~~l~e~v~~p~~~p~~f~~~g~~~~~gvLl~GPPGtGKT~lAkaiA~e--~~~~-----f~~v~~--- 544 (806)
T 3cf2_A 475 TWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANE--CQAN-----FISIKG--- 544 (806)
T ss_dssp CSTTCCSCHHHHHHHTTTTTTTTTCSGGGSSSCCCCCSCCEEESSTTSSHHHHHHHHHHT--TTCE-----EEECCH---
T ss_pred CHHHhCCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEecCCCCCchHHHHHHHHH--hCCc-----eEEecc---
Confidence 334577888777777776543210 01223455789999999999999999984 3322 233321
Q ss_pred HHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHhcCceEEEEEecCCCCC----------cc----ChhHHHHhhhCCC--
Q 002308 221 EFRIAKAMLEALTGSTSNLNALQSLLISIDESIAGKRFLLVLDDVWDGD----------YI----KWEPFYRCLKKGL-- 284 (938)
Q Consensus 221 ~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~----------~~----~~~~l~~~l~~~~-- 284 (938)
.+++....+ .....+...+...-+..+.+|++|+++..- .. ....++..+....
T Consensus 545 -----~~l~s~~vG-----ese~~vr~lF~~Ar~~~P~IifiDEiDsl~~~R~~~~~~~~~~~~rv~~~lL~~mdg~~~~ 614 (806)
T 3cf2_A 545 -----PELLTMWFG-----ESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTK 614 (806)
T ss_dssp -----HHHHTTTCS-----SCHHHHHHHHHHHHTTCSEEEECSCGGGCC--------------CHHHHHHHHHHHSSCSS
T ss_pred -----chhhccccc-----hHHHHHHHHHHHHHHcCCceeechhhhHHhhccCCCCCCCchHHHHHHHHHHHHHhCCCCC
Confidence 122222111 111222223333334678999999985310 00 1223333343322
Q ss_pred CCcEEEEEcCChhhhh-hh----cCCceEeCCCCChHHHHHHHHHhh
Q 002308 285 HGSKILITTRKESIVS-MM----RSTDIISIEELAEEECWVLFKRLA 326 (938)
Q Consensus 285 ~gs~ilvTtr~~~v~~-~~----~~~~~~~l~~L~~~~~~~lf~~~~ 326 (938)
.+--||-||..++... .+ .-...+.+..-+.++..++|+.+.
T Consensus 615 ~~V~vi~aTN~p~~lD~AllRpgRfd~~i~v~lPd~~~R~~il~~~l 661 (806)
T 3cf2_A 615 KNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANL 661 (806)
T ss_dssp SSEEEECC-CCSSSSCHHHHSTTTSCCEEEC-----CHHHHTTTTTS
T ss_pred CCEEEEEeCCCchhCCHhHcCCCcceEEEEECCcCHHHHHHHHHHHh
Confidence 2323333554433221 11 224577777666677777777665
No 276
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=94.49 E-value=0.24 Score=50.72 Aligned_cols=81 Identities=15% Similarity=0.129 Sum_probs=43.9
Q ss_pred CCeEEEEEEccCCChHHHHHHHHhhhhhhhc-ccCeEEEEEeCCCCCHHHHHHHHHHHh------cC-CCCCCCcHHHHH
Q 002308 175 KGLHIISIVGMGGIGKTTLAQLACNHVEVKR-EFDKTLWVCVSETFDEFRIAKAMLEAL------TG-STSNLNALQSLL 246 (938)
Q Consensus 175 ~~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~-~f~~~~wv~~~~~~~~~~~~~~i~~~l------~~-~~~~~~~~~~~~ 246 (938)
....+|+|.|..|+||||||+.+........ ....+..|+...-.-.......+...- .. ..+...+.+.+.
T Consensus 29 ~~~~ii~I~G~sGsGKSTla~~L~~~l~~~g~~~~~~~iv~~D~f~~~~~~~~~l~~~~~~~~l~~~~g~p~a~d~~~l~ 108 (290)
T 1odf_A 29 KCPLFIFFSGPQGSGKSFTSIQIYNHLMEKYGGEKSIGYASIDDFYLTHEDQLKLNEQFKNNKLLQGRGLPGTHDMKLLQ 108 (290)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHHHHHGGGSCEEEEEGGGGBCCHHHHHHHHHHTTTCGGGSSSCSTTSBCHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhhhcCCCCceEEEeccccccCChHHHHHHhccccccchhhhccCcchhHHHHHH
Confidence 4678999999999999999998887433211 123444445433222234444443321 10 113344555555
Q ss_pred HHHHHHhcC
Q 002308 247 ISIDESIAG 255 (938)
Q Consensus 247 ~~l~~~l~~ 255 (938)
..+.....+
T Consensus 109 ~~l~~l~~g 117 (290)
T 1odf_A 109 EVLNTIFNN 117 (290)
T ss_dssp HHHHHHTC-
T ss_pred HHHHHhhcc
Confidence 555554443
No 277
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=94.44 E-value=0.0077 Score=57.44 Aligned_cols=108 Identities=11% Similarity=-0.029 Sum_probs=51.8
Q ss_pred EEEEEEccCCChHHHHHHHHhhhhhhhcccCeEEEEEeCCCCCHHHHHHHHHHHhcCC--CCCCCcHHHHHHHHHHHhcC
Q 002308 178 HIISIVGMGGIGKTTLAQLACNHVEVKREFDKTLWVCVSETFDEFRIAKAMLEALTGS--TSNLNALQSLLISIDESIAG 255 (938)
Q Consensus 178 ~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~--~~~~~~~~~~~~~l~~~l~~ 255 (938)
.++.|+|+.|+||||++..++.....+ .. .++++..... .+.....+...++.. .....+..+ +.+.+.+
T Consensus 4 ~i~vi~G~~gsGKTT~ll~~~~~~~~~-g~-~v~~~~~~~d--~r~~~~~i~s~~g~~~~~~~~~~~~~----~~~~~~~ 75 (184)
T 2orw_A 4 KLTVITGPMYSGKTTELLSFVEIYKLG-KK-KVAVFKPKID--SRYHSTMIVSHSGNGVEAHVIERPEE----MRKYIEE 75 (184)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHHHHT-TC-EEEEEEEC-------CCCEECC----CEECEEESSGGG----GGGGCCT
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHC-CC-eEEEEeeccc--cccCcccEEecCCCceeeEEECCHHH----HHHHhcC
Confidence 478899999999999997776643222 22 2333332211 000000000001100 000011111 1222234
Q ss_pred ceEEEEEecCCCCCccChhHHHHhhhCCCCCcEEEEEcCCh
Q 002308 256 KRFLLVLDDVWDGDYIKWEPFYRCLKKGLHGSKILITTRKE 296 (938)
Q Consensus 256 ~~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtr~~ 296 (938)
+.-+|++|.+...+. .|......+.+. |..|++|.+..
T Consensus 76 ~~dvviIDE~Q~~~~-~~~~~l~~l~~~--~~~Vi~~Gl~~ 113 (184)
T 2orw_A 76 DTRGVFIDEVQFFNP-SLFEVVKDLLDR--GIDVFCAGLDL 113 (184)
T ss_dssp TEEEEEECCGGGSCT-THHHHHHHHHHT--TCEEEEEEESB
T ss_pred CCCEEEEECcccCCH-HHHHHHHHHHHC--CCCEEEEeecc
Confidence 566999999976532 355444434332 77799888743
No 278
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=94.40 E-value=0.11 Score=55.85 Aligned_cols=57 Identities=18% Similarity=0.229 Sum_probs=37.7
Q ss_pred CeEEEEEEccCCChHHHHHHHHhhhhhhh----cccCeEEEEEeCCCCCHHHHHHHHHHHhc
Q 002308 176 GLHIISIVGMGGIGKTTLAQLACNHVEVK----REFDKTLWVCVSETFDEFRIAKAMLEALT 233 (938)
Q Consensus 176 ~~~vv~i~G~~GiGKTtLa~~v~~~~~~~----~~f~~~~wv~~~~~~~~~~~~~~i~~~l~ 233 (938)
...++.|+|++|+|||||+..++-..... ..-..++|++....++...+ ..+++.++
T Consensus 177 ~Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~~~~~~rl-~~~a~~~g 237 (400)
T 3lda_A 177 TGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGTFRPVRL-VSIAQRFG 237 (400)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHH-HHHHHHTT
T ss_pred CCcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCCccCHHHH-HHHHHHcC
Confidence 44689999999999999999765321111 12246889887776665543 33555554
No 279
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=94.36 E-value=0.055 Score=47.93 Aligned_cols=53 Identities=21% Similarity=0.237 Sum_probs=35.9
Q ss_pred EEecCCCCCC-cccCccccccCCCCeeeecCCcccccccc-ccCCCCccEEEcCCCC
Q 002308 572 ALDFPSFYLP-LEIPRNIEKLVHLRYLNLSDQKIKKLPET-LCELYNLEKLDISGCS 626 (938)
Q Consensus 572 ~L~L~~n~~~-~~lp~~~~~l~~L~~L~L~~~~i~~lp~~-i~~l~~L~~L~l~~~~ 626 (938)
+++.+++.+. ..+|..+. .+|++|+|++|.|+.+|.. |..+++|++|+|++|.
T Consensus 12 ~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP 66 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANP 66 (130)
T ss_dssp EEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSC
T ss_pred EEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCC
Confidence 5677777632 15665433 3678888888888877754 5667778888887776
No 280
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=94.33 E-value=0.13 Score=54.53 Aligned_cols=48 Identities=29% Similarity=0.381 Sum_probs=33.4
Q ss_pred CeEEEEEEccCCChHHHHHHHHhhhhhhhccc----CeEEEEEeCCCCCHHH
Q 002308 176 GLHIISIVGMGGIGKTTLAQLACNHVEVKREF----DKTLWVCVSETFDEFR 223 (938)
Q Consensus 176 ~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f----~~~~wv~~~~~~~~~~ 223 (938)
...++.|+|++|+|||||+..++......... ..++|++....+....
T Consensus 130 ~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~~~~~~~ 181 (349)
T 1pzn_A 130 TQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFRPER 181 (349)
T ss_dssp SSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSSCCCHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCCCCCHHH
Confidence 56899999999999999999988742111111 2458888766554433
No 281
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=94.23 E-value=0.17 Score=52.23 Aligned_cols=88 Identities=18% Similarity=0.193 Sum_probs=46.4
Q ss_pred CeEEEEEEccCCChHHHHHHHHhhhhhhhcccCeEEEEEeCCCCCHH--HHHHHHHHHhcCCC---CCCCcHHH-HHHHH
Q 002308 176 GLHIISIVGMGGIGKTTLAQLACNHVEVKREFDKTLWVCVSETFDEF--RIAKAMLEALTGST---SNLNALQS-LLISI 249 (938)
Q Consensus 176 ~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~--~~~~~i~~~l~~~~---~~~~~~~~-~~~~l 249 (938)
...+++|+|++|+||||++..++.... ..=..+.++... .+... +-+...++..+... ....+... ....+
T Consensus 103 ~~~vi~ivG~~GsGKTTl~~~LA~~l~--~~g~kV~lv~~D-~~r~~a~eqL~~~~~~~gl~~~~~~s~~~~~~v~~~al 179 (306)
T 1vma_A 103 PPFVIMVVGVNGTGKTTSCGKLAKMFV--DEGKSVVLAAAD-TFRAAAIEQLKIWGERVGATVISHSEGADPAAVAFDAV 179 (306)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHHH--HTTCCEEEEEEC-TTCHHHHHHHHHHHHHHTCEEECCSTTCCHHHHHHHHH
T ss_pred CCeEEEEEcCCCChHHHHHHHHHHHHH--hcCCEEEEEccc-cccHHHHHHHHHHHHHcCCcEEecCCccCHHHHHHHHH
Confidence 568999999999999999999988432 221234455432 23322 11233344433211 11111111 22334
Q ss_pred HHHhcCceEEEEEecCC
Q 002308 250 DESIAGKRFLLVLDDVW 266 (938)
Q Consensus 250 ~~~l~~~~~LlVlDdv~ 266 (938)
...+....-++|+|-.-
T Consensus 180 ~~a~~~~~dvvIiDtpg 196 (306)
T 1vma_A 180 AHALARNKDVVIIDTAG 196 (306)
T ss_dssp HHHHHTTCSEEEEEECC
T ss_pred HHHHhcCCCEEEEECCC
Confidence 44444444578888663
No 282
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=94.23 E-value=0.023 Score=53.82 Aligned_cols=22 Identities=18% Similarity=0.295 Sum_probs=20.4
Q ss_pred EEEEEEccCCChHHHHHHHHhh
Q 002308 178 HIISIVGMGGIGKTTLAQLACN 199 (938)
Q Consensus 178 ~vv~i~G~~GiGKTtLa~~v~~ 199 (938)
.+|.|.|++|+||||+|+.+..
T Consensus 4 ~~i~l~G~~GsGKST~a~~La~ 25 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCLQS 25 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5789999999999999999887
No 283
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=94.20 E-value=0.032 Score=60.01 Aligned_cols=50 Identities=22% Similarity=0.270 Sum_probs=36.1
Q ss_pred ceecchhhHHHHHHHHhcc----C-----cccCCCeEEEEEEccCCChHHHHHHHHhhh
Q 002308 151 EICGRVGERNALLSMLLCE----S-----SEQQKGLHIISIVGMGGIGKTTLAQLACNH 200 (938)
Q Consensus 151 ~~vGr~~~~~~l~~~l~~~----~-----~~~~~~~~vv~i~G~~GiGKTtLa~~v~~~ 200 (938)
.++|.+..++.+...+... . .........+.++|++|+|||++|+.+++.
T Consensus 16 ~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~vll~GppGtGKT~la~~ia~~ 74 (363)
T 3hws_A 16 YVIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLARL 74 (363)
T ss_dssp HCCSCHHHHHHHHHHHHHHHHHHHTTSCSSSCCCCCCCEEEECCTTSSHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHHHhhhccccccccccCCCCeEEEECCCCCCHHHHHHHHHHH
Confidence 3689888888888877310 0 000123467899999999999999999884
No 284
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=94.19 E-value=0.034 Score=61.84 Aligned_cols=23 Identities=30% Similarity=0.496 Sum_probs=20.9
Q ss_pred EEEEEccCCChHHHHHHHHhhhh
Q 002308 179 IISIVGMGGIGKTTLAQLACNHV 201 (938)
Q Consensus 179 vv~i~G~~GiGKTtLa~~v~~~~ 201 (938)
.+.|.|.+|+|||+++..+....
T Consensus 47 ~~li~G~aGTGKT~ll~~~~~~l 69 (459)
T 3upu_A 47 HVTINGPAGTGATTLTKFIIEAL 69 (459)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHHHH
Confidence 89999999999999999988853
No 285
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=94.16 E-value=0.14 Score=53.63 Aligned_cols=54 Identities=17% Similarity=0.066 Sum_probs=38.5
Q ss_pred CeEEEEEEccCCChHHHHHHHHhhhhhhhcccCeEEEEEeCCCCCHHHHHHHHHHHhc
Q 002308 176 GLHIISIVGMGGIGKTTLAQLACNHVEVKREFDKTLWVCVSETFDEFRIAKAMLEALT 233 (938)
Q Consensus 176 ~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~ 233 (938)
...++.|.|.+|+||||+|..++..... .=..++|++. ..+..++...++....
T Consensus 45 ~G~LiiIaG~pG~GKTt~al~ia~~~a~--~g~~Vl~fSl--Ems~~ql~~Rlls~~~ 98 (338)
T 4a1f_A 45 KGSLVIIGARPSMGKTSLMMNMVLSALN--DDRGVAVFSL--EMSAEQLALRALSDLT 98 (338)
T ss_dssp TTCEEEEEECTTSCHHHHHHHHHHHHHH--TTCEEEEEES--SSCHHHHHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHHH--cCCeEEEEeC--CCCHHHHHHHHHHHhh
Confidence 3468999999999999999999885332 1135666654 4567777777766543
No 286
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=94.10 E-value=0.027 Score=54.09 Aligned_cols=24 Identities=38% Similarity=0.570 Sum_probs=21.7
Q ss_pred CeEEEEEEccCCChHHHHHHHHhh
Q 002308 176 GLHIISIVGMGGIGKTTLAQLACN 199 (938)
Q Consensus 176 ~~~vv~i~G~~GiGKTtLa~~v~~ 199 (938)
...+++|.|++|+||||+++.+..
T Consensus 8 ~g~~i~l~G~~GsGKSTl~~~La~ 31 (191)
T 1zp6_A 8 GGNILLLSGHPGSGKSTIAEALAN 31 (191)
T ss_dssp TTEEEEEEECTTSCHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHh
Confidence 357899999999999999999977
No 287
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=94.08 E-value=0.028 Score=53.37 Aligned_cols=22 Identities=36% Similarity=0.431 Sum_probs=20.3
Q ss_pred EEEEEEccCCChHHHHHHHHhh
Q 002308 178 HIISIVGMGGIGKTTLAQLACN 199 (938)
Q Consensus 178 ~vv~i~G~~GiGKTtLa~~v~~ 199 (938)
.+|.|.|++|+||||+|+.+..
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 5799999999999999999876
No 288
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=94.07 E-value=0.025 Score=53.46 Aligned_cols=19 Identities=47% Similarity=0.754 Sum_probs=18.2
Q ss_pred EEEEEccCCChHHHHHHHH
Q 002308 179 IISIVGMGGIGKTTLAQLA 197 (938)
Q Consensus 179 vv~i~G~~GiGKTtLa~~v 197 (938)
+|+|.|++|+||||+|+.+
T Consensus 3 ~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp EEEEECCTTSCHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 7899999999999999988
No 289
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=94.01 E-value=0.037 Score=54.01 Aligned_cols=39 Identities=26% Similarity=0.334 Sum_probs=28.4
Q ss_pred hHHHHHHHHhccCcccCCCeEEEEEEccCCChHHHHHHHHhhh
Q 002308 158 ERNALLSMLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNH 200 (938)
Q Consensus 158 ~~~~l~~~l~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~v~~~ 200 (938)
-+++|.+.+... .....+|+|.|+.|+|||||++.+...
T Consensus 7 ~~~~~~~~~~~~----~~~g~~v~I~G~sGsGKSTl~~~l~~~ 45 (208)
T 3c8u_A 7 LCQGVLERLDPR----QPGRQLVALSGAPGSGKSTLSNPLAAA 45 (208)
T ss_dssp HHHHHHHHSCTT----CCSCEEEEEECCTTSCTHHHHHHHHHH
T ss_pred HHHHHHHHHHhc----CCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 344455554432 135679999999999999999998874
No 290
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=93.96 E-value=0.27 Score=53.31 Aligned_cols=25 Identities=32% Similarity=0.381 Sum_probs=22.6
Q ss_pred CeEEEEEEccCCChHHHHHHHHhhh
Q 002308 176 GLHIISIVGMGGIGKTTLAQLACNH 200 (938)
Q Consensus 176 ~~~vv~i~G~~GiGKTtLa~~v~~~ 200 (938)
.+.+|.++|.+|+||||++..++..
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~ 123 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARY 123 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHH
Confidence 4789999999999999999998874
No 291
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=93.96 E-value=0.028 Score=52.90 Aligned_cols=21 Identities=24% Similarity=0.172 Sum_probs=19.7
Q ss_pred EEEEEccCCChHHHHHHHHhh
Q 002308 179 IISIVGMGGIGKTTLAQLACN 199 (938)
Q Consensus 179 vv~i~G~~GiGKTtLa~~v~~ 199 (938)
+|+|.|++|+||||+|+.+..
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~ 23 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSK 23 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999877
No 292
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=93.92 E-value=0.027 Score=54.57 Aligned_cols=23 Identities=35% Similarity=0.424 Sum_probs=21.1
Q ss_pred eEEEEEEccCCChHHHHHHHHhh
Q 002308 177 LHIISIVGMGGIGKTTLAQLACN 199 (938)
Q Consensus 177 ~~vv~i~G~~GiGKTtLa~~v~~ 199 (938)
..+|+|.|++|+||||+|+.++.
T Consensus 25 ~~~i~l~G~~GsGKsTl~~~La~ 47 (199)
T 3vaa_A 25 MVRIFLTGYMGAGKTTLGKAFAR 47 (199)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHH
Confidence 45899999999999999999987
No 293
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=93.90 E-value=0.036 Score=53.71 Aligned_cols=25 Identities=32% Similarity=0.371 Sum_probs=22.7
Q ss_pred CeEEEEEEccCCChHHHHHHHHhhh
Q 002308 176 GLHIISIVGMGGIGKTTLAQLACNH 200 (938)
Q Consensus 176 ~~~vv~i~G~~GiGKTtLa~~v~~~ 200 (938)
...+|+|.|+.|+||||+++.+...
T Consensus 24 ~g~~i~l~G~sGsGKSTl~~~La~~ 48 (200)
T 3uie_A 24 KGCVIWVTGLSGSGKSTLACALNQM 48 (200)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4679999999999999999999884
No 294
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=93.89 E-value=0.051 Score=56.72 Aligned_cols=46 Identities=22% Similarity=0.263 Sum_probs=31.9
Q ss_pred ecchhhHHHHHHHHhccCcccCCCeEEEEEEccCCChHHHHHHHHhhh
Q 002308 153 CGRVGERNALLSMLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNH 200 (938)
Q Consensus 153 vGr~~~~~~l~~~l~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~v~~~ 200 (938)
|+-+.-.+++.+.+...-. ......|.|+|++|+||||+++.++..
T Consensus 2 ~~~~~L~~~il~~l~~~i~--~g~~~~i~l~G~~G~GKTTl~~~la~~ 47 (359)
T 2ga8_A 2 VDTHKLADDVLQLLDNRIE--DNYRVCVILVGSPGSGKSTIAEELCQI 47 (359)
T ss_dssp CCHHHHHHHHHHHHHHTTT--TCSCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHhc--cCCeeEEEEECCCCCcHHHHHHHHHHH
Confidence 3444556666666643221 224567899999999999999998884
No 295
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=93.83 E-value=0.055 Score=55.70 Aligned_cols=25 Identities=24% Similarity=0.280 Sum_probs=22.4
Q ss_pred CCeEEEEEEccCCChHHHHHHHHhh
Q 002308 175 KGLHIISIVGMGGIGKTTLAQLACN 199 (938)
Q Consensus 175 ~~~~vv~i~G~~GiGKTtLa~~v~~ 199 (938)
....+|.|.|++|+||||+|+.+..
T Consensus 31 ~~~~livl~G~sGsGKSTla~~L~~ 55 (287)
T 1gvn_B 31 ESPTAFLLGGQPGSGKTSLRSAIFE 55 (287)
T ss_dssp SSCEEEEEECCTTSCTHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 4568999999999999999999876
No 296
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=93.72 E-value=0.31 Score=49.05 Aligned_cols=24 Identities=33% Similarity=0.364 Sum_probs=21.1
Q ss_pred eEEEEEEccCCChHHHHHHHHhhh
Q 002308 177 LHIISIVGMGGIGKTTLAQLACNH 200 (938)
Q Consensus 177 ~~vv~i~G~~GiGKTtLa~~v~~~ 200 (938)
..+++|.|+.|+|||||.+.++.-
T Consensus 30 Ge~~~i~G~NGsGKSTLlk~l~Gl 53 (263)
T 2pjz_A 30 GEKVIILGPNGSGKTTLLRAISGL 53 (263)
T ss_dssp SSEEEEECCTTSSHHHHHHHHTTS
T ss_pred CEEEEEECCCCCCHHHHHHHHhCC
Confidence 348999999999999999998863
No 297
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=93.71 E-value=0.032 Score=53.01 Aligned_cols=24 Identities=13% Similarity=0.387 Sum_probs=21.4
Q ss_pred eEEEEEEccCCChHHHHHHHHhhh
Q 002308 177 LHIISIVGMGGIGKTTLAQLACNH 200 (938)
Q Consensus 177 ~~vv~i~G~~GiGKTtLa~~v~~~ 200 (938)
.++++|+|+.|+|||||++.+...
T Consensus 5 g~~i~i~GpsGsGKSTL~~~L~~~ 28 (180)
T 1kgd_A 5 RKTLVLLGAHGVGRRHIKNTLITK 28 (180)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHhh
Confidence 468999999999999999998873
No 298
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=93.69 E-value=0.024 Score=60.67 Aligned_cols=46 Identities=22% Similarity=0.213 Sum_probs=33.2
Q ss_pred CCceecchhhHHHHHHHHhccCcccCCCeEEEEEEccCCChHHHHHHHHhhh
Q 002308 149 EEEICGRVGERNALLSMLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNH 200 (938)
Q Consensus 149 ~~~~vGr~~~~~~l~~~l~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~v~~~ 200 (938)
-+.++|.+...+.+........ ..-+.|+|++|+|||++|+.+++.
T Consensus 23 f~~i~G~~~~~~~l~~~~~~~~------~~~vLl~G~~GtGKT~la~~la~~ 68 (350)
T 1g8p_A 23 FSAIVGQEDMKLALLLTAVDPG------IGGVLVFGDRGTGKSTAVRALAAL 68 (350)
T ss_dssp GGGSCSCHHHHHHHHHHHHCGG------GCCEEEECCGGGCTTHHHHHHHHH
T ss_pred chhccChHHHHHHHHHHhhCCC------CceEEEECCCCccHHHHHHHHHHh
Confidence 3468999886665544443222 123899999999999999999884
No 299
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=93.65 E-value=0.091 Score=50.44 Aligned_cols=21 Identities=33% Similarity=0.267 Sum_probs=18.0
Q ss_pred EEEEEccCCChHHHHHHHHhh
Q 002308 179 IISIVGMGGIGKTTLAQLACN 199 (938)
Q Consensus 179 vv~i~G~~GiGKTtLa~~v~~ 199 (938)
++.|.|.+|.|||++|.....
T Consensus 7 i~l~tG~pGsGKT~~a~~~~~ 27 (199)
T 2r2a_A 7 ICLITGTPGSGKTLKMVSMMA 27 (199)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHH
Confidence 678999999999999977543
No 300
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=93.55 E-value=0.033 Score=53.14 Aligned_cols=23 Identities=30% Similarity=0.514 Sum_probs=20.7
Q ss_pred eEEEEEEccCCChHHHHHHHHhh
Q 002308 177 LHIISIVGMGGIGKTTLAQLACN 199 (938)
Q Consensus 177 ~~vv~i~G~~GiGKTtLa~~v~~ 199 (938)
.+.|.|.|++|+||||+|+.+..
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~ 27 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAK 27 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 35789999999999999999987
No 301
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=93.54 E-value=0.084 Score=50.33 Aligned_cols=26 Identities=27% Similarity=0.376 Sum_probs=23.0
Q ss_pred CCeEEEEEEccCCChHHHHHHHHhhh
Q 002308 175 KGLHIISIVGMGGIGKTTLAQLACNH 200 (938)
Q Consensus 175 ~~~~vv~i~G~~GiGKTtLa~~v~~~ 200 (938)
....+|.|.|++|+||||+++.++..
T Consensus 11 ~~~~~i~l~G~~GsGKsT~~~~L~~~ 36 (186)
T 2yvu_A 11 EKGIVVWLTGLPGSGKTTIATRLADL 36 (186)
T ss_dssp SCCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHH
Confidence 35678999999999999999999884
No 302
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=93.52 E-value=0.024 Score=53.81 Aligned_cols=22 Identities=36% Similarity=0.430 Sum_probs=19.7
Q ss_pred EEEEEEccCCChHHHHHHHHhh
Q 002308 178 HIISIVGMGGIGKTTLAQLACN 199 (938)
Q Consensus 178 ~vv~i~G~~GiGKTtLa~~v~~ 199 (938)
|.|.|+|+.|+|||||++.+..
T Consensus 2 RpIVi~GPSG~GK~Tl~~~L~~ 23 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTLLKKLFA 23 (186)
T ss_dssp CCEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4588999999999999998876
No 303
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=93.51 E-value=0.042 Score=52.75 Aligned_cols=24 Identities=33% Similarity=0.400 Sum_probs=21.6
Q ss_pred CeEEEEEEccCCChHHHHHHHHhh
Q 002308 176 GLHIISIVGMGGIGKTTLAQLACN 199 (938)
Q Consensus 176 ~~~vv~i~G~~GiGKTtLa~~v~~ 199 (938)
...+|.|.|++|+||||+|+.+..
T Consensus 4 ~~~~I~l~G~~GsGKST~~~~L~~ 27 (193)
T 2rhm_A 4 TPALIIVTGHPATGKTTLSQALAT 27 (193)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 457899999999999999999877
No 304
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=93.51 E-value=0.031 Score=52.60 Aligned_cols=22 Identities=32% Similarity=0.436 Sum_probs=20.3
Q ss_pred EEEEEEccCCChHHHHHHHHhh
Q 002308 178 HIISIVGMGGIGKTTLAQLACN 199 (938)
Q Consensus 178 ~vv~i~G~~GiGKTtLa~~v~~ 199 (938)
.+|+|.|+.|+||||+++.+..
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~ 26 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQ 26 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 4699999999999999999887
No 305
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=93.42 E-value=0.048 Score=51.43 Aligned_cols=24 Identities=29% Similarity=0.551 Sum_probs=21.6
Q ss_pred CeEEEEEEccCCChHHHHHHHHhh
Q 002308 176 GLHIISIVGMGGIGKTTLAQLACN 199 (938)
Q Consensus 176 ~~~vv~i~G~~GiGKTtLa~~v~~ 199 (938)
...+++|.|+.|+||||+++.+..
T Consensus 7 ~g~~i~l~G~~GsGKSTl~~~l~~ 30 (175)
T 1knq_A 7 DHHIYVLMGVSGSGKSAVASEVAH 30 (175)
T ss_dssp TSEEEEEECSTTSCHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHH
Confidence 457899999999999999999876
No 306
>3fwy_A Light-independent protochlorophyllide reductase I ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2}
Probab=93.41 E-value=0.042 Score=57.18 Aligned_cols=40 Identities=23% Similarity=0.336 Sum_probs=28.1
Q ss_pred CCeEEEEEEccCCChHHHHHHHHhhhhhhhcccCeEEEEEeC
Q 002308 175 KGLHIISIVGMGGIGKTTLAQLACNHVEVKREFDKTLWVCVS 216 (938)
Q Consensus 175 ~~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~ 216 (938)
++.+||+|+|-|||||||.+..++.-. ...=..+.-|++.
T Consensus 46 ~~aKVIAIaGKGGVGKTTtavNLA~aL--A~~GkkVllID~D 85 (314)
T 3fwy_A 46 TGAKVFAVYGKGGIGKSTTSSNLSAAF--SILGKRVLQIGCD 85 (314)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHH--HHTTCCEEEEEES
T ss_pred CCceEEEEECCCccCHHHHHHHHHHHH--HHCCCeEEEEecC
Confidence 367999999999999999998776632 2211246666654
No 307
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=93.32 E-value=0.041 Score=53.69 Aligned_cols=25 Identities=24% Similarity=0.375 Sum_probs=22.0
Q ss_pred CeEEEEEEccCCChHHHHHHHHhhh
Q 002308 176 GLHIISIVGMGGIGKTTLAQLACNH 200 (938)
Q Consensus 176 ~~~vv~i~G~~GiGKTtLa~~v~~~ 200 (938)
...+++|+|+.|+|||||++.+...
T Consensus 7 ~g~~i~l~GpsGsGKsTl~~~L~~~ 31 (208)
T 3tau_A 7 RGLLIVLSGPSGVGKGTVREAVFKD 31 (208)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHS
T ss_pred CCcEEEEECcCCCCHHHHHHHHHhh
Confidence 3568999999999999999999873
No 308
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=93.26 E-value=0.042 Score=51.62 Aligned_cols=24 Identities=29% Similarity=0.570 Sum_probs=20.6
Q ss_pred CeEEEEEEccCCChHHHHHHHHhh
Q 002308 176 GLHIISIVGMGGIGKTTLAQLACN 199 (938)
Q Consensus 176 ~~~vv~i~G~~GiGKTtLa~~v~~ 199 (938)
...+++|+|+.|+|||||++..+.
T Consensus 8 ~gei~~l~G~nGsGKSTl~~~~~~ 31 (171)
T 4gp7_A 8 ELSLVVLIGSSGSGKSTFAKKHFK 31 (171)
T ss_dssp SSEEEEEECCTTSCHHHHHHHHSC
T ss_pred CCEEEEEECCCCCCHHHHHHHHcc
Confidence 457999999999999999997543
No 309
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=93.23 E-value=0.045 Score=52.56 Aligned_cols=23 Identities=26% Similarity=0.388 Sum_probs=20.8
Q ss_pred EEEEEEccCCChHHHHHHHHhhh
Q 002308 178 HIISIVGMGGIGKTTLAQLACNH 200 (938)
Q Consensus 178 ~vv~i~G~~GiGKTtLa~~v~~~ 200 (938)
.+|.|.|++|+||||+|+.+...
T Consensus 2 ~~I~i~G~~GsGKsT~~~~L~~~ 24 (194)
T 1nks_A 2 KIGIVTGIPGVGKSTVLAKVKEI 24 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 47899999999999999999884
No 310
>2ck3_D ATP synthase subunit beta\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1cow_D* 1bmf_D* 1e1q_D* 1e1r_D* 1efr_D* 1e79_D* 1h8h_D* 1ohh_D* 1qo1_D 1w0j_D* 1w0k_D* 1h8e_D* 2jdi_D* 2jiz_D* 2jj1_D* 2jj2_D* 2v7q_D* 2wss_D* 2w6j_D 2w6e_D ...
Probab=93.22 E-value=0.42 Score=51.76 Aligned_cols=65 Identities=23% Similarity=0.265 Sum_probs=43.1
Q ss_pred HHHHHHhccCcccCCCeEEEEEEccCCChHHHHHHHHhhhhhhhcccCeEEEEEeCCCC-CHHHHHHHHHHH
Q 002308 161 ALLSMLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNHVEVKREFDKTLWVCVSETF-DEFRIAKAMLEA 231 (938)
Q Consensus 161 ~l~~~l~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~i~~~ 231 (938)
++++.|..-. ....++|.|.+|+|||+|+.++++.. .+.+-+.++++-+++.. .+.++.+++...
T Consensus 142 r~ID~l~pig-----kGQr~~Ifgg~G~GKT~L~~~i~~~~-~~~~~~v~V~~~iGER~rEv~e~~~~~~~~ 207 (482)
T 2ck3_D 142 KVVDLLAPYA-----KGGKIGLFGGAGVGKTVLIMELINNV-AKAHGGYSVFAGVGERTREGNDLYHEMIES 207 (482)
T ss_dssp HHHHHHSCEE-----TTCEEEEEECTTSSHHHHHHHHHHHT-TTTCSSEEEEEEESCCHHHHHHHHHHHHHH
T ss_pred EEEecccccc-----cCCeeeeecCCCCChHHHHHHHHHhh-HhhCCCEEEEEECCCcchHHHHHHHHhhhc
Confidence 3556665422 34578999999999999999998842 12233567777777644 345566666654
No 311
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=93.21 E-value=0.042 Score=53.23 Aligned_cols=25 Identities=28% Similarity=0.477 Sum_probs=22.0
Q ss_pred CeEEEEEEccCCChHHHHHHHHhhh
Q 002308 176 GLHIISIVGMGGIGKTTLAQLACNH 200 (938)
Q Consensus 176 ~~~vv~i~G~~GiGKTtLa~~v~~~ 200 (938)
...+|+|.|+.|+||||+++.+...
T Consensus 28 ~g~~i~l~G~~GsGKSTl~~~L~~~ 52 (200)
T 4eun_A 28 PTRHVVVMGVSGSGKTTIAHGVADE 52 (200)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHh
Confidence 3568999999999999999999873
No 312
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=93.14 E-value=0.067 Score=53.97 Aligned_cols=40 Identities=25% Similarity=0.217 Sum_probs=28.0
Q ss_pred HHHHHHHHhccCcccCCCeEEEEEEccCCChHHHHHHHHhh
Q 002308 159 RNALLSMLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACN 199 (938)
Q Consensus 159 ~~~l~~~l~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~v~~ 199 (938)
.+.+...+..... ......+|.|.|++|+||||+|+.+..
T Consensus 15 ~~~~~~~~~~~~~-~~~~~~~i~l~G~~GsGKSTla~~L~~ 54 (253)
T 2p5t_B 15 LARNLRSLTRGKK-SSKQPIAILLGGQSGAGKTTIHRIKQK 54 (253)
T ss_dssp HHHHHHHHHTTCC-CCSSCEEEEEESCGGGTTHHHHHHHHH
T ss_pred HHHHHHHHHccCC-cccCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3444444443322 134568999999999999999999877
No 313
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=93.13 E-value=0.52 Score=49.16 Aligned_cols=26 Identities=35% Similarity=0.409 Sum_probs=23.3
Q ss_pred CCeEEEEEEccCCChHHHHHHHHhhh
Q 002308 175 KGLHIISIVGMGGIGKTTLAQLACNH 200 (938)
Q Consensus 175 ~~~~vv~i~G~~GiGKTtLa~~v~~~ 200 (938)
....+++|+|+.|+||||+++.++..
T Consensus 127 ~~g~vi~lvG~nGaGKTTll~~Lag~ 152 (328)
T 3e70_C 127 EKPYVIMFVGFNGSGKTTTIAKLANW 152 (328)
T ss_dssp CSSEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 35789999999999999999999874
No 314
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=93.10 E-value=0.052 Score=54.81 Aligned_cols=25 Identities=16% Similarity=0.247 Sum_probs=22.0
Q ss_pred CCeEEEEEEccCCChHHHHHHHHhh
Q 002308 175 KGLHIISIVGMGGIGKTTLAQLACN 199 (938)
Q Consensus 175 ~~~~vv~i~G~~GiGKTtLa~~v~~ 199 (938)
....+|+|.|+.|+||||+|+.+..
T Consensus 20 ~~~~iI~I~G~~GSGKST~a~~L~~ 44 (252)
T 1uj2_A 20 GEPFLIGVSGGTASGKSSVCAKIVQ 44 (252)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHH
Confidence 3567899999999999999998877
No 315
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=93.03 E-value=0.049 Score=52.23 Aligned_cols=23 Identities=35% Similarity=0.689 Sum_probs=20.9
Q ss_pred EEEEEEccCCChHHHHHHHHhhh
Q 002308 178 HIISIVGMGGIGKTTLAQLACNH 200 (938)
Q Consensus 178 ~vv~i~G~~GiGKTtLa~~v~~~ 200 (938)
.+|.|.|++|+||||+|+.+...
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~~ 26 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMDN 26 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 47999999999999999999873
No 316
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=93.00 E-value=0.048 Score=51.93 Aligned_cols=23 Identities=35% Similarity=0.433 Sum_probs=20.9
Q ss_pred eEEEEEEccCCChHHHHHHHHhh
Q 002308 177 LHIISIVGMGGIGKTTLAQLACN 199 (938)
Q Consensus 177 ~~vv~i~G~~GiGKTtLa~~v~~ 199 (938)
...|+|.|+.|+||||+++.+..
T Consensus 10 ~~~I~l~G~~GsGKSTv~~~La~ 32 (184)
T 1y63_A 10 GINILITGTPGTGKTSMAEMIAA 32 (184)
T ss_dssp SCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 45799999999999999998876
No 317
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=92.99 E-value=0.04 Score=53.53 Aligned_cols=25 Identities=24% Similarity=0.414 Sum_probs=22.0
Q ss_pred CeEEEEEEccCCChHHHHHHHHhhh
Q 002308 176 GLHIISIVGMGGIGKTTLAQLACNH 200 (938)
Q Consensus 176 ~~~vv~i~G~~GiGKTtLa~~v~~~ 200 (938)
...+|+|.|++|+||||+++.+...
T Consensus 11 ~~~~i~l~G~sGsGKsTl~~~L~~~ 35 (204)
T 2qor_A 11 RIPPLVVCGPSGVGKGTLIKKVLSE 35 (204)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHH
T ss_pred cCCEEEEECCCCCCHHHHHHHHHHh
Confidence 4568999999999999999998773
No 318
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=92.99 E-value=0.28 Score=55.10 Aligned_cols=55 Identities=13% Similarity=0.091 Sum_probs=38.4
Q ss_pred CeEEEEEEccCCChHHHHHHHHhhhhhhhcccCeEEEEEeCCCCCHHHHHHHHHHHhc
Q 002308 176 GLHIISIVGMGGIGKTTLAQLACNHVEVKREFDKTLWVCVSETFDEFRIAKAMLEALT 233 (938)
Q Consensus 176 ~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~ 233 (938)
...++.|.|.+|+||||+|..++.....+.. ..++|++... +..++...++....
T Consensus 241 ~G~l~li~G~pG~GKT~lal~~a~~~a~~~g-~~vl~~s~E~--s~~~l~~r~~~~~~ 295 (503)
T 1q57_A 241 GGEVIMVTSGSGMVMSTFVRQQALQWGTAMG-KKVGLAMLEE--SVEETAEDLIGLHN 295 (503)
T ss_dssp TTCEEEEEESSCHHHHHHHHHHHHHHTTTSC-CCEEEEESSS--CHHHHHHHHHHHHT
T ss_pred CCeEEEEeecCCCCchHHHHHHHHHHHHhcC-CcEEEEeccC--CHHHHHHHHHHHHc
Confidence 4468899999999999999999885322211 3567776544 56777777765443
No 319
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=92.99 E-value=0.052 Score=54.72 Aligned_cols=23 Identities=26% Similarity=0.199 Sum_probs=20.7
Q ss_pred EEEEEEccCCChHHHHHHHHhhh
Q 002308 178 HIISIVGMGGIGKTTLAQLACNH 200 (938)
Q Consensus 178 ~vv~i~G~~GiGKTtLa~~v~~~ 200 (938)
.+|.|.|+.|+||||||+.++..
T Consensus 2 ~li~I~G~~GSGKSTla~~La~~ 24 (253)
T 2ze6_A 2 LLHLIYGPTCSGKTDMAIQIAQE 24 (253)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHhc
Confidence 47899999999999999999873
No 320
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=92.99 E-value=0.4 Score=51.84 Aligned_cols=24 Identities=33% Similarity=0.339 Sum_probs=21.5
Q ss_pred eEEEEEEccCCChHHHHHHHHhhh
Q 002308 177 LHIISIVGMGGIGKTTLAQLACNH 200 (938)
Q Consensus 177 ~~vv~i~G~~GiGKTtLa~~v~~~ 200 (938)
..+++++|.+|+||||++..++..
T Consensus 98 ~~vi~i~G~~GsGKTT~~~~LA~~ 121 (425)
T 2ffh_A 98 RNLWFLVGLQGSGKTTTAAKLALY 121 (425)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 468999999999999999999874
No 321
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=92.99 E-value=0.055 Score=51.80 Aligned_cols=22 Identities=27% Similarity=0.465 Sum_probs=20.1
Q ss_pred EEEEEEccCCChHHHHHHHHhh
Q 002308 178 HIISIVGMGGIGKTTLAQLACN 199 (938)
Q Consensus 178 ~vv~i~G~~GiGKTtLa~~v~~ 199 (938)
.+++|.|+.|+||||+++.+..
T Consensus 3 ~ii~l~G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 3 KLYIITGPAGVGKSTTCKRLAA 24 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHhc
Confidence 5789999999999999999975
No 322
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=92.98 E-value=0.041 Score=53.34 Aligned_cols=24 Identities=21% Similarity=0.432 Sum_probs=21.3
Q ss_pred eEEEEEEccCCChHHHHHHHHhhh
Q 002308 177 LHIISIVGMGGIGKTTLAQLACNH 200 (938)
Q Consensus 177 ~~vv~i~G~~GiGKTtLa~~v~~~ 200 (938)
..+|+|.|+.|+||||+|+.+...
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~ 41 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEA 41 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 357999999999999999998873
No 323
>3l0o_A Transcription termination factor RHO; helicase, RHO factor, RNA capture mechanism, ATP-binding, hydrolase, nucleotide-binding, RN binding; 2.35A {Thermotoga maritima}
Probab=92.98 E-value=0.41 Score=50.21 Aligned_cols=53 Identities=17% Similarity=0.115 Sum_probs=34.7
Q ss_pred HHHHHHHHhccCcccCCCeEEEEEEccCCChHHHHHHHHhhhhhhh-cccCeEEEEEeCC
Q 002308 159 RNALLSMLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNHVEVK-REFDKTLWVCVSE 217 (938)
Q Consensus 159 ~~~l~~~l~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~v~~~~~~~-~~f~~~~wv~~~~ 217 (938)
--++++.+..-. ....++|+|.+|+|||+|+..+++..... ..+. ++++-+++
T Consensus 162 GiraID~l~Pig-----rGQR~lIfg~~g~GKT~Ll~~Ia~~i~~~~~dv~-~V~~lIGE 215 (427)
T 3l0o_A 162 STRLIDLFAPIG-----KGQRGMIVAPPKAGKTTILKEIANGIAENHPDTI-RIILLIDE 215 (427)
T ss_dssp HHHHHHHHSCCB-----TTCEEEEEECTTCCHHHHHHHHHHHHHHHCTTSE-EEEEECSC
T ss_pred cchhhhhccccc-----CCceEEEecCCCCChhHHHHHHHHHHhhcCCCeE-EEEEEecc
Confidence 345667776432 34578999999999999999998853221 1222 34566654
No 324
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=92.97 E-value=0.048 Score=52.97 Aligned_cols=23 Identities=26% Similarity=0.394 Sum_probs=20.9
Q ss_pred eEEEEEEccCCChHHHHHHHHhh
Q 002308 177 LHIISIVGMGGIGKTTLAQLACN 199 (938)
Q Consensus 177 ~~vv~i~G~~GiGKTtLa~~v~~ 199 (938)
..+++|.|+.|+|||||++.+..
T Consensus 7 g~ii~l~Gp~GsGKSTl~~~L~~ 29 (205)
T 3tr0_A 7 ANLFIISAPSGAGKTSLVRALVK 29 (205)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHH
T ss_pred CcEEEEECcCCCCHHHHHHHHHh
Confidence 35899999999999999999876
No 325
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=92.96 E-value=0.042 Score=52.12 Aligned_cols=24 Identities=38% Similarity=0.524 Sum_probs=21.1
Q ss_pred eEEEEEEccCCChHHHHHHHHhhh
Q 002308 177 LHIISIVGMGGIGKTTLAQLACNH 200 (938)
Q Consensus 177 ~~vv~i~G~~GiGKTtLa~~v~~~ 200 (938)
.++|.|.|++|+||||+|+.+...
T Consensus 11 ~~~i~i~G~~GsGKst~~~~l~~~ 34 (180)
T 3iij_A 11 LPNILLTGTPGVGKTTLGKELASK 34 (180)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHH
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHH
Confidence 457899999999999999998863
No 326
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=92.95 E-value=0.39 Score=52.00 Aligned_cols=26 Identities=38% Similarity=0.354 Sum_probs=23.0
Q ss_pred CeEEEEEEccCCChHHHHHHHHhhhh
Q 002308 176 GLHIISIVGMGGIGKTTLAQLACNHV 201 (938)
Q Consensus 176 ~~~vv~i~G~~GiGKTtLa~~v~~~~ 201 (938)
...+|.++|.+|+||||++..++...
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l 121 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFY 121 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 46899999999999999999998753
No 327
>1fx0_B ATP synthase beta chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_B*
Probab=92.94 E-value=0.25 Score=53.74 Aligned_cols=64 Identities=22% Similarity=0.214 Sum_probs=43.6
Q ss_pred HHHHHhccCcccCCCeEEEEEEccCCChHHHHHHHHhhhhhhhcccCeEEEEEeCCCC-CHHHHHHHHHHH
Q 002308 162 LLSMLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNHVEVKREFDKTLWVCVSETF-DEFRIAKAMLEA 231 (938)
Q Consensus 162 l~~~l~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~i~~~ 231 (938)
+++.|..-. ....++|.|.+|+|||+|+.++.+.. .+.+-+.++++-+++.. .+.++.+++...
T Consensus 155 vID~l~pig-----kGqr~gIfgg~GvGKT~L~~~l~~~~-a~~~~~v~V~~~iGER~rEv~e~~~~~~~~ 219 (498)
T 1fx0_B 155 VVNLLAPYR-----RGGKIGLFGGAGVGKTVLIMELINNI-AKAHGGVSVFGGVGERTREGNDLYMEMKES 219 (498)
T ss_dssp THHHHSCCC-----TTCCEEEEECSSSSHHHHHHHHHHHT-TTTCSSCEEEEEESCCSHHHHHHHHHHHHT
T ss_pred Eeeeecccc-----cCCeEEeecCCCCCchHHHHHHHHHH-HhhCCCEEEEEEcccCcHHHHHHHHhhhcc
Confidence 555555422 34568999999999999999998842 12334677888887655 445666666653
No 328
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=92.91 E-value=0.24 Score=54.80 Aligned_cols=52 Identities=17% Similarity=0.220 Sum_probs=36.0
Q ss_pred CeEEEEEEccCCChHHHHHHHHhhhhhhhcccCeEEEEEeCCCCCHHHHHHHHHH
Q 002308 176 GLHIISIVGMGGIGKTTLAQLACNHVEVKREFDKTLWVCVSETFDEFRIAKAMLE 230 (938)
Q Consensus 176 ~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~ 230 (938)
...++.|.|.+|+||||+|..++........ ..++|++... +...+...++.
T Consensus 202 ~G~liiI~G~pG~GKTtl~l~ia~~~~~~~g-~~Vl~~s~E~--s~~~l~~r~~~ 253 (454)
T 2r6a_A 202 RSDLIIVAARPSVGKTAFALNIAQNVATKTN-ENVAIFSLEM--SAQQLVMRMLC 253 (454)
T ss_dssp TTCEEEEECCTTSCHHHHHHHHHHHHHHHSS-CCEEEEESSS--CHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHHhCC-CcEEEEECCC--CHHHHHHHHHH
Confidence 4468999999999999999999885432211 2577776543 45666666543
No 329
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=92.91 E-value=0.056 Score=51.96 Aligned_cols=23 Identities=22% Similarity=0.280 Sum_probs=20.8
Q ss_pred eEEEEEEccCCChHHHHHHHHhh
Q 002308 177 LHIISIVGMGGIGKTTLAQLACN 199 (938)
Q Consensus 177 ~~vv~i~G~~GiGKTtLa~~v~~ 199 (938)
..+|+|.|++|+||||+|+.+..
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~ 25 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVE 25 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999998876
No 330
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=92.90 E-value=0.063 Score=52.05 Aligned_cols=24 Identities=25% Similarity=0.368 Sum_probs=21.7
Q ss_pred CeEEEEEEccCCChHHHHHHHHhh
Q 002308 176 GLHIISIVGMGGIGKTTLAQLACN 199 (938)
Q Consensus 176 ~~~vv~i~G~~GiGKTtLa~~v~~ 199 (938)
...+|+|.|++|+||||+|+.+..
T Consensus 14 ~~~~I~l~G~~GsGKsT~~~~L~~ 37 (203)
T 1ukz_A 14 QVSVIFVLGGPGAGKGTQCEKLVK 37 (203)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 457899999999999999998876
No 331
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=92.90 E-value=0.064 Score=50.99 Aligned_cols=37 Identities=19% Similarity=0.149 Sum_probs=27.1
Q ss_pred HHHHHHHHhccCcccCCCeEEEEEEccCCChHHHHHHHHhhh
Q 002308 159 RNALLSMLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNH 200 (938)
Q Consensus 159 ~~~l~~~l~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~v~~~ 200 (938)
+..+..++.. -+....+.|+|++|+||||+|..+++.
T Consensus 45 ~~~l~~~~~~-----iPkkn~ili~GPPGtGKTt~a~ala~~ 81 (212)
T 1tue_A 45 LGALKSFLKG-----TPKKNCLVFCGPANTGKSYFGMSFIHF 81 (212)
T ss_dssp HHHHHHHHHT-----CTTCSEEEEESCGGGCHHHHHHHHHHH
T ss_pred HHHHHHHHhc-----CCcccEEEEECCCCCCHHHHHHHHHHH
Confidence 5555665542 123346899999999999999999884
No 332
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=92.88 E-value=0.06 Score=52.43 Aligned_cols=24 Identities=42% Similarity=0.439 Sum_probs=21.7
Q ss_pred CeEEEEEEccCCChHHHHHHHHhh
Q 002308 176 GLHIISIVGMGGIGKTTLAQLACN 199 (938)
Q Consensus 176 ~~~vv~i~G~~GiGKTtLa~~v~~ 199 (938)
...+|+|.|+.|+||||+|+.+..
T Consensus 20 ~~~~i~i~G~~GsGKSTl~~~L~~ 43 (207)
T 2qt1_A 20 KTFIIGISGVTNSGKTTLAKNLQK 43 (207)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 457899999999999999998876
No 333
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=92.87 E-value=0.057 Score=52.74 Aligned_cols=25 Identities=40% Similarity=0.412 Sum_probs=22.2
Q ss_pred CeEEEEEEccCCChHHHHHHHHhhh
Q 002308 176 GLHIISIVGMGGIGKTTLAQLACNH 200 (938)
Q Consensus 176 ~~~vv~i~G~~GiGKTtLa~~v~~~ 200 (938)
...+|+|.|+.|+|||||++.+...
T Consensus 5 ~~~~i~i~G~~GsGKSTl~~~l~~~ 29 (211)
T 3asz_A 5 KPFVIGIAGGTASGKTTLAQALART 29 (211)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHH
Confidence 4578999999999999999998873
No 334
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=92.84 E-value=0.056 Score=50.57 Aligned_cols=24 Identities=29% Similarity=0.425 Sum_probs=20.8
Q ss_pred CeEEEEEEccCCChHHHHHHHHhh
Q 002308 176 GLHIISIVGMGGIGKTTLAQLACN 199 (938)
Q Consensus 176 ~~~vv~i~G~~GiGKTtLa~~v~~ 199 (938)
...+|+|.|+.|+||||+|+.+..
T Consensus 6 ~~~~i~l~G~~GsGKSTva~~La~ 29 (168)
T 1zuh_A 6 HMQHLVLIGFMGSGKSSLAQELGL 29 (168)
T ss_dssp --CEEEEESCTTSSHHHHHHHHHH
T ss_pred ccceEEEECCCCCCHHHHHHHHHH
Confidence 456899999999999999999887
No 335
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=92.80 E-value=0.066 Score=51.03 Aligned_cols=23 Identities=26% Similarity=0.270 Sum_probs=20.9
Q ss_pred eEEEEEEccCCChHHHHHHHHhh
Q 002308 177 LHIISIVGMGGIGKTTLAQLACN 199 (938)
Q Consensus 177 ~~vv~i~G~~GiGKTtLa~~v~~ 199 (938)
...|+|.|++|+||||+|+.+..
T Consensus 4 g~~I~l~G~~GsGKST~~~~La~ 26 (186)
T 3cm0_A 4 GQAVIFLGPPGAGKGTQASRLAQ 26 (186)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 45799999999999999999876
No 336
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=92.78 E-value=0.062 Score=52.07 Aligned_cols=25 Identities=44% Similarity=0.450 Sum_probs=22.4
Q ss_pred CCeEEEEEEccCCChHHHHHHHHhh
Q 002308 175 KGLHIISIVGMGGIGKTTLAQLACN 199 (938)
Q Consensus 175 ~~~~vv~i~G~~GiGKTtLa~~v~~ 199 (938)
....+|+|.|+.|+||||+|+.+..
T Consensus 6 ~~~~~I~i~G~~GsGKST~~~~La~ 30 (203)
T 1uf9_A 6 KHPIIIGITGNIGSGKSTVAALLRS 30 (203)
T ss_dssp CCCEEEEEEECTTSCHHHHHHHHHH
T ss_pred cCceEEEEECCCCCCHHHHHHHHHH
Confidence 3567999999999999999999877
No 337
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=92.77 E-value=0.96 Score=60.38 Aligned_cols=235 Identities=13% Similarity=0.016 Sum_probs=0.0
Q ss_pred EEEEccCCChHHHHHHHHhhhhhhhcccCeEEEEEeCCCCCHHHHHHHHHHHhcCCC-------CCCCcHHHHHHHHHHH
Q 002308 180 ISIVGMGGIGKTTLAQLACNHVEVKREFDKTLWVCVSETFDEFRIAKAMLEALTGST-------SNLNALQSLLISIDES 252 (938)
Q Consensus 180 v~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~-------~~~~~~~~~~~~l~~~ 252 (938)
|.++|++|+|||++|+.+.. .... ...+.++.+...+...+++.+-..+.... ....
T Consensus 1270 vLL~GPpGtGKT~la~~~l~--~~~~--~~~~~infsa~ts~~~~~~~i~~~~~~~~~~~g~~~~P~~------------ 1333 (2695)
T 4akg_A 1270 IILCGPPGSGKTMIMNNALR--NSSL--YDVVGINFSKDTTTEHILSALHRHTNYVTTSKGLTLLPKS------------ 1333 (2695)
T ss_dssp EEEECSTTSSHHHHHHHHHH--SCSS--CEEEEEECCTTCCHHHHHHHHHHHBCCEEETTTEEEEEBS------------
T ss_pred EEEECCCCCCHHHHHHHHHh--cCCC--CceEEEEeecCCCHHHHHHHHHHHhhhccccCCccccCCC------------
Q ss_pred hcCceEEEEEecCCCCCcc------ChhHHHHhhhCCC------------CCcEEEEEcCChh-------hhhhhcCCce
Q 002308 253 IAGKRFLLVLDDVWDGDYI------KWEPFYRCLKKGL------------HGSKILITTRKES-------IVSMMRSTDI 307 (938)
Q Consensus 253 l~~~~~LlVlDdv~~~~~~------~~~~l~~~l~~~~------------~gs~ilvTtr~~~-------v~~~~~~~~~ 307 (938)
.+++.++.+||+.-.... ..+.+...+..++ .+..+|-++..+. -.........
T Consensus 1334 -~gk~~VlFiDEinmp~~d~yg~q~~lelLRq~le~gg~yd~~~~~~~~~~~i~lIaA~Npp~~gGR~~l~~rllRrf~v 1412 (2695)
T 4akg_A 1334 -DIKNLVLFCDEINLPKLDKYGSQNVVLFLRQLMEKQGFWKTPENKWVTIERIHIVGACNPPTDPGRIPMSERFTRHAAI 1412 (2695)
T ss_dssp -SSSCEEEEEETTTCSCCCSSSCCHHHHHHHHHHHTSSEECTTTCCEEEEESEEEEEEECCTTSTTCCCCCHHHHTTEEE
T ss_pred -CCceEEEEecccccccccccCchhHHHHHHHHHhcCCEEEcCCCcEEEecCEEEEEecCCCccCCCccCChhhhheeeE
Q ss_pred EeCCCCChHHHHHHHHHhhcCCCCCchhhHHHHHHHHHHHhcCCChhHHHHHHhhhcCCCCHHHHHHHHhcccccccccc
Q 002308 308 ISIEELAEEECWVLFKRLAFFGRSTEECEKLEQIGQRIARKCKGLPLAAKTMGSLMSSKKTEEEWKRILNSDLWKVEEIE 387 (938)
Q Consensus 308 ~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~~~~~l~~~~~~~~w~~~~~~~~~~~~~~~ 387 (938)
+.+...+.++-..+|.....+.-. ..+....++..++... .+-|..+...
T Consensus 1413 i~i~~P~~~~l~~I~~~il~~~l~--~~~~v~~~~~~lv~at-------------------i~~y~~v~~~--------- 1462 (2695)
T 4akg_A 1413 LYLGYPSGKSLSQIYEIYYKAIFK--LVPEFRSYTEPFARAS-------------------VHLYNECKAR--------- 1462 (2695)
T ss_dssp EECCCCTTTHHHHHHHHHHHHHTT--SSGGGGGGHHHHHHHH-------------------HHHHHHHHHH---------
T ss_pred EEeCCCCHHHHHHHHHHHHHHHhc--cCHHHHHHHHHHHHHH-------------------HHHHHHHHHH---------
Q ss_pred ccchhhHHhhhccCChhHHHHHhHhccC-CCCcccChHHHHHHHHHcCCCcchhccccchHHHHHHHHHHHHHhccc
Q 002308 388 KGVLTPLWLSYNDLPSRVKRCFSYCAVF-PKDYNIKKDELITLWMAQGYLSAEAAEQDEEMETIGEEYFGILASRSF 463 (938)
Q Consensus 388 ~~~~~~l~~sy~~L~~~~k~~f~~~~~f-p~~~~i~~~~li~~w~a~g~i~~~~~~~~~~~~~~~~~~~~~L~~~~l 463 (938)
..+..+.-|.-=+.++.+.|.-+... ++...-+...++++|+-|..-.-.+.-.+..........+.+.+...|
T Consensus 1463 --~~~~~k~HY~FnlRDLsrv~qGll~~~~~~~~~~~~~l~rLw~HE~~Rvf~DRLv~~~D~~~f~~~l~~~~~~~f 1537 (2695)
T 4akg_A 1463 --YSTGLQSHYLFSPRELTRLVRGVYTAINTGPRQTLRSLIRLWAYEAWRIFADRLVGVKEKNSFEQLLYETVDKYL 1537 (2695)
T ss_dssp --SCTTTCTTCCCCHHHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHTTTCCSSHHHHHHHHHHHHHHHHHS
T ss_pred --cCCccCCCcccCHHHHHHHHHHHHhcCchhhhccHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHh
No 338
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=92.77 E-value=0.054 Score=52.68 Aligned_cols=24 Identities=25% Similarity=0.376 Sum_probs=21.3
Q ss_pred eEEEEEEccCCChHHHHHHHHhhh
Q 002308 177 LHIISIVGMGGIGKTTLAQLACNH 200 (938)
Q Consensus 177 ~~vv~i~G~~GiGKTtLa~~v~~~ 200 (938)
..+++|.|+.|+||||+++.+...
T Consensus 6 g~~i~l~G~~GsGKSTl~~~L~~~ 29 (207)
T 2j41_A 6 GLLIVLSGPSGVGKGTVRKRIFED 29 (207)
T ss_dssp CCEEEEECSTTSCHHHHHHHHHHC
T ss_pred CCEEEEECCCCCCHHHHHHHHHHh
Confidence 458999999999999999998773
No 339
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=92.75 E-value=0.042 Score=52.49 Aligned_cols=23 Identities=35% Similarity=0.417 Sum_probs=20.7
Q ss_pred EEEEEEccCCChHHHHHHHHhhh
Q 002308 178 HIISIVGMGGIGKTTLAQLACNH 200 (938)
Q Consensus 178 ~vv~i~G~~GiGKTtLa~~v~~~ 200 (938)
++++|.|+.|+|||||++.+...
T Consensus 2 ~ii~l~GpsGaGKsTl~~~L~~~ 24 (186)
T 3a00_A 2 RPIVISGPSGTGKSTLLKKLFAE 24 (186)
T ss_dssp CCEEEESSSSSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHhh
Confidence 47899999999999999999873
No 340
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=92.73 E-value=0.53 Score=51.26 Aligned_cols=26 Identities=23% Similarity=0.325 Sum_probs=23.0
Q ss_pred CeEEEEEEccCCChHHHHHHHHhhhh
Q 002308 176 GLHIISIVGMGGIGKTTLAQLACNHV 201 (938)
Q Consensus 176 ~~~vv~i~G~~GiGKTtLa~~v~~~~ 201 (938)
..++|.++|.+|+||||++..++...
T Consensus 99 ~~~vI~ivG~~GvGKTT~a~~LA~~l 124 (433)
T 2xxa_A 99 PPAVVLMAGLQGAGKTTSVGKLGKFL 124 (433)
T ss_dssp SSEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 56899999999999999999998753
No 341
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=92.68 E-value=0.049 Score=51.36 Aligned_cols=22 Identities=36% Similarity=0.528 Sum_probs=20.0
Q ss_pred EEEEEccCCChHHHHHHHHhhh
Q 002308 179 IISIVGMGGIGKTTLAQLACNH 200 (938)
Q Consensus 179 vv~i~G~~GiGKTtLa~~v~~~ 200 (938)
.|.|.|++|+||||+|+.++..
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~ 27 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKD 27 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHH
Confidence 5899999999999999999873
No 342
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=92.68 E-value=0.068 Score=52.03 Aligned_cols=26 Identities=23% Similarity=0.299 Sum_probs=23.1
Q ss_pred CCeEEEEEEccCCChHHHHHHHHhhh
Q 002308 175 KGLHIISIVGMGGIGKTTLAQLACNH 200 (938)
Q Consensus 175 ~~~~vv~i~G~~GiGKTtLa~~v~~~ 200 (938)
...++|.|.|++|+||||.|+.++..
T Consensus 27 ~k~kiI~llGpPGsGKgTqa~~L~~~ 52 (217)
T 3umf_A 27 AKAKVIFVLGGPGSGKGTQCEKLVQK 52 (217)
T ss_dssp TSCEEEEEECCTTCCHHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 46789999999999999999988773
No 343
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=92.67 E-value=0.057 Score=51.58 Aligned_cols=24 Identities=17% Similarity=0.538 Sum_probs=21.7
Q ss_pred CeEEEEEEccCCChHHHHHHHHhh
Q 002308 176 GLHIISIVGMGGIGKTTLAQLACN 199 (938)
Q Consensus 176 ~~~vv~i~G~~GiGKTtLa~~v~~ 199 (938)
..++++|+|+.|+|||||++.+..
T Consensus 18 ~g~~ivl~GPSGaGKsTL~~~L~~ 41 (197)
T 3ney_A 18 GRKTLVLIGASGVGRSHIKNALLS 41 (197)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCEEEEECcCCCCHHHHHHHHHh
Confidence 457899999999999999999886
No 344
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=92.61 E-value=0.06 Score=52.25 Aligned_cols=22 Identities=32% Similarity=0.471 Sum_probs=20.0
Q ss_pred EEEEEccCCChHHHHHHHHhhh
Q 002308 179 IISIVGMGGIGKTTLAQLACNH 200 (938)
Q Consensus 179 vv~i~G~~GiGKTtLa~~v~~~ 200 (938)
.|+|.|+.|+||||+++.+...
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~ 23 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKK 23 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHHh
Confidence 5899999999999999998873
No 345
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=92.60 E-value=0.056 Score=52.04 Aligned_cols=23 Identities=35% Similarity=0.400 Sum_probs=21.0
Q ss_pred eEEEEEEccCCChHHHHHHHHhh
Q 002308 177 LHIISIVGMGGIGKTTLAQLACN 199 (938)
Q Consensus 177 ~~vv~i~G~~GiGKTtLa~~v~~ 199 (938)
..+|+|.|++|+||||+|+.+..
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~La~ 31 (196)
T 2c95_A 9 TNIIFVVGGPGSGKGTQCEKIVQ 31 (196)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999876
No 346
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=92.58 E-value=0.067 Score=54.22 Aligned_cols=24 Identities=25% Similarity=0.558 Sum_probs=21.6
Q ss_pred eEEEEEEccCCChHHHHHHHHhhh
Q 002308 177 LHIISIVGMGGIGKTTLAQLACNH 200 (938)
Q Consensus 177 ~~vv~i~G~~GiGKTtLa~~v~~~ 200 (938)
..+|.|.|++|+||||+|+.+...
T Consensus 4 ~~lIvl~G~pGSGKSTla~~La~~ 27 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTFSKNLAKI 27 (260)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHH
Confidence 468999999999999999999874
No 347
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=92.55 E-value=0.1 Score=52.21 Aligned_cols=24 Identities=21% Similarity=0.043 Sum_probs=21.8
Q ss_pred CeEEEEEEccCCChHHHHHHHHhh
Q 002308 176 GLHIISIVGMGGIGKTTLAQLACN 199 (938)
Q Consensus 176 ~~~vv~i~G~~GiGKTtLa~~v~~ 199 (938)
...+|+|.|++|+||||+|+.+..
T Consensus 28 ~~~~I~l~G~~GsGKsT~a~~L~~ 51 (243)
T 3tlx_A 28 PDGRYIFLGAPGSGKGTQSLNLKK 51 (243)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 567899999999999999999876
No 348
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=92.52 E-value=0.06 Score=52.24 Aligned_cols=21 Identities=38% Similarity=0.479 Sum_probs=19.5
Q ss_pred EEEEEccCCChHHHHHHHHhh
Q 002308 179 IISIVGMGGIGKTTLAQLACN 199 (938)
Q Consensus 179 vv~i~G~~GiGKTtLa~~v~~ 199 (938)
+|+|.|+.|+||||+++.+..
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHH
Confidence 689999999999999998876
No 349
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=92.51 E-value=0.068 Score=51.97 Aligned_cols=22 Identities=41% Similarity=0.540 Sum_probs=20.1
Q ss_pred EEEEEEccCCChHHHHHHHHhh
Q 002308 178 HIISIVGMGGIGKTTLAQLACN 199 (938)
Q Consensus 178 ~vv~i~G~~GiGKTtLa~~v~~ 199 (938)
.+|+|.|+.|+||||+++.+..
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999865
No 350
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=92.49 E-value=0.9 Score=50.28 Aligned_cols=26 Identities=31% Similarity=0.367 Sum_probs=21.8
Q ss_pred CCeEEEEEEccCCChHHHHHHHHhhh
Q 002308 175 KGLHIISIVGMGGIGKTTLAQLACNH 200 (938)
Q Consensus 175 ~~~~vv~i~G~~GiGKTtLa~~v~~~ 200 (938)
...++|+|+|.+|+||||++..++..
T Consensus 99 ~~~~vI~ivG~~GvGKTTl~~kLA~~ 124 (504)
T 2j37_W 99 GKQNVIMFVGLQGSGKTTTCSKLAYY 124 (504)
T ss_dssp S--EEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 35789999999999999999999874
No 351
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=92.48 E-value=0.099 Score=51.63 Aligned_cols=25 Identities=28% Similarity=0.412 Sum_probs=22.4
Q ss_pred CeEEEEEEccCCChHHHHHHHHhhh
Q 002308 176 GLHIISIVGMGGIGKTTLAQLACNH 200 (938)
Q Consensus 176 ~~~vv~i~G~~GiGKTtLa~~v~~~ 200 (938)
....|+|+|.+|+|||||+..+...
T Consensus 37 ~~~~i~ivG~~gvGKTtl~~~l~~~ 61 (226)
T 2hf9_A 37 GVVAFDFMGAIGSGKTLLIEKLIDN 61 (226)
T ss_dssp TCEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHH
Confidence 5678999999999999999999875
No 352
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=92.44 E-value=0.05 Score=52.55 Aligned_cols=24 Identities=25% Similarity=0.350 Sum_probs=20.8
Q ss_pred eEEEEEEccCCChHHHHHHHHhhh
Q 002308 177 LHIISIVGMGGIGKTTLAQLACNH 200 (938)
Q Consensus 177 ~~vv~i~G~~GiGKTtLa~~v~~~ 200 (938)
.++++|+|+.|+|||||++.+...
T Consensus 4 g~~i~lvGpsGaGKSTLl~~L~~~ 27 (198)
T 1lvg_A 4 PRPVVLSGPSGAGKSTLLKKLFQE 27 (198)
T ss_dssp -CCEEEECCTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHhh
Confidence 357899999999999999998773
No 353
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=92.40 E-value=0.11 Score=48.03 Aligned_cols=25 Identities=28% Similarity=0.369 Sum_probs=21.9
Q ss_pred CeEEEEEEccCCChHHHHHHHHhhh
Q 002308 176 GLHIISIVGMGGIGKTTLAQLACNH 200 (938)
Q Consensus 176 ~~~vv~i~G~~GiGKTtLa~~v~~~ 200 (938)
..++++|.|..|+|||||+..+...
T Consensus 3 ~~~~i~i~G~sGsGKTTl~~~L~~~ 27 (169)
T 1xjc_A 3 AMNVWQVVGYKHSGKTTLMEKWVAA 27 (169)
T ss_dssp -CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHh
Confidence 3568999999999999999999884
No 354
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=92.40 E-value=0.075 Score=51.92 Aligned_cols=24 Identities=29% Similarity=0.412 Sum_probs=21.5
Q ss_pred eEEEEEEccCCChHHHHHHHHhhh
Q 002308 177 LHIISIVGMGGIGKTTLAQLACNH 200 (938)
Q Consensus 177 ~~vv~i~G~~GiGKTtLa~~v~~~ 200 (938)
..+|+|.|++|+||||+|+.+...
T Consensus 4 ~~~I~i~G~~GsGKsT~~~~L~~~ 27 (213)
T 2plr_A 4 GVLIAFEGIDGSGKSSQATLLKDW 27 (213)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHH
Confidence 368999999999999999999874
No 355
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=92.40 E-value=0.082 Score=50.51 Aligned_cols=24 Identities=29% Similarity=0.461 Sum_probs=22.0
Q ss_pred CeEEEEEEccCCChHHHHHHHHhh
Q 002308 176 GLHIISIVGMGGIGKTTLAQLACN 199 (938)
Q Consensus 176 ~~~vv~i~G~~GiGKTtLa~~v~~ 199 (938)
...+|+|.|+.|+||||+|+.+..
T Consensus 11 ~~~iIgltG~~GSGKSTva~~L~~ 34 (192)
T 2grj_A 11 HHMVIGVTGKIGTGKSTVCEILKN 34 (192)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHH
T ss_pred cceEEEEECCCCCCHHHHHHHHHH
Confidence 568999999999999999998876
No 356
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=92.39 E-value=0.078 Score=50.16 Aligned_cols=25 Identities=24% Similarity=0.280 Sum_probs=22.1
Q ss_pred CeEEEEEEccCCChHHHHHHHHhhh
Q 002308 176 GLHIISIVGMGGIGKTTLAQLACNH 200 (938)
Q Consensus 176 ~~~vv~i~G~~GiGKTtLa~~v~~~ 200 (938)
...+|+|.|+.|+||||+++.+...
T Consensus 4 ~g~~i~l~G~~GsGKST~~~~L~~~ 28 (179)
T 2pez_A 4 RGCTVWLTGLSGAGKTTVSMALEEY 28 (179)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHH
Confidence 4578999999999999999999874
No 357
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=92.38 E-value=0.085 Score=48.55 Aligned_cols=25 Identities=28% Similarity=0.247 Sum_probs=22.4
Q ss_pred CeEEEEEEccCCChHHHHHHHHhhh
Q 002308 176 GLHIISIVGMGGIGKTTLAQLACNH 200 (938)
Q Consensus 176 ~~~vv~i~G~~GiGKTtLa~~v~~~ 200 (938)
...+++|.|+.|.|||||++.++.-
T Consensus 32 ~Ge~v~L~G~nGaGKTTLlr~l~g~ 56 (158)
T 1htw_A 32 KAIMVYLNGDLGAGKTTLTRGMLQG 56 (158)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHh
Confidence 4569999999999999999999874
No 358
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=92.36 E-value=0.053 Score=51.60 Aligned_cols=21 Identities=29% Similarity=0.499 Sum_probs=19.6
Q ss_pred EEEEEccCCChHHHHHHHHhh
Q 002308 179 IISIVGMGGIGKTTLAQLACN 199 (938)
Q Consensus 179 vv~i~G~~GiGKTtLa~~v~~ 199 (938)
+|+|.|++|+||||+|+.+..
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~ 24 (184)
T 2iyv_A 4 KAVLVGLPGSGKSTIGRRLAK 24 (184)
T ss_dssp SEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999877
No 359
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=92.33 E-value=0.067 Score=52.93 Aligned_cols=22 Identities=36% Similarity=0.542 Sum_probs=20.3
Q ss_pred EEEEEEccCCChHHHHHHHHhh
Q 002308 178 HIISIVGMGGIGKTTLAQLACN 199 (938)
Q Consensus 178 ~vv~i~G~~GiGKTtLa~~v~~ 199 (938)
.+|+|.|+.|+||||+|+.+..
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~ 27 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAE 27 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999876
No 360
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=92.27 E-value=0.69 Score=50.66 Aligned_cols=53 Identities=13% Similarity=0.153 Sum_probs=36.5
Q ss_pred CeEEEEEEccCCChHHHHHHHHhhhhhhhcccCeEEEEEeCCCCCHHHHHHHHHHHh
Q 002308 176 GLHIISIVGMGGIGKTTLAQLACNHVEVKREFDKTLWVCVSETFDEFRIAKAMLEAL 232 (938)
Q Consensus 176 ~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l 232 (938)
...++.|.|.+|+||||+|..++.....+ . ..++|++.. .+..++...++...
T Consensus 196 ~G~liiIaG~pG~GKTtlal~ia~~~a~~-g-~~vl~fSlE--ms~~ql~~R~~~~~ 248 (444)
T 3bgw_A 196 RRNFVLIAARPSMGKTAFALKQAKNMSDN-D-DVVNLHSLE--MGKKENIKRLIVTA 248 (444)
T ss_dssp SSCEEEEEECSSSSHHHHHHHHHHHHHHT-T-CEEEEECSS--SCTTHHHHHHHHHH
T ss_pred CCcEEEEEeCCCCChHHHHHHHHHHHHHc-C-CEEEEEECC--CCHHHHHHHHHHHH
Confidence 45689999999999999999998864333 1 356666544 34556666665543
No 361
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=92.26 E-value=0.47 Score=48.81 Aligned_cols=24 Identities=33% Similarity=0.339 Sum_probs=21.6
Q ss_pred eEEEEEEccCCChHHHHHHHHhhh
Q 002308 177 LHIISIVGMGGIGKTTLAQLACNH 200 (938)
Q Consensus 177 ~~vv~i~G~~GiGKTtLa~~v~~~ 200 (938)
..+++|+|.+|+||||++..++..
T Consensus 98 ~~~i~i~g~~G~GKTT~~~~la~~ 121 (295)
T 1ls1_A 98 RNLWFLVGLQGSGKTTTAAKLALY 121 (295)
T ss_dssp SEEEEEECCTTTTHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 468999999999999999999884
No 362
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=92.24 E-value=0.073 Score=49.69 Aligned_cols=21 Identities=29% Similarity=0.414 Sum_probs=19.5
Q ss_pred EEEEEccCCChHHHHHHHHhh
Q 002308 179 IISIVGMGGIGKTTLAQLACN 199 (938)
Q Consensus 179 vv~i~G~~GiGKTtLa~~v~~ 199 (938)
.|+|.|++|+||||+|+.+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSR 22 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999877
No 363
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=92.22 E-value=0.23 Score=63.73 Aligned_cols=84 Identities=23% Similarity=0.181 Sum_probs=54.9
Q ss_pred CeEEEEEEccCCChHHHHHHHHhhhhhhhcccCeEEEEEeCCCCCHHHHHHHHHHHhcCCC-----CCCCcHHHHHHHHH
Q 002308 176 GLHIISIVGMGGIGKTTLAQLACNHVEVKREFDKTLWVCVSETFDEFRIAKAMLEALTGST-----SNLNALQSLLISID 250 (938)
Q Consensus 176 ~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~-----~~~~~~~~~~~~l~ 250 (938)
..+.|.|+|++|+|||+||.+++.... ..=..++|+++.+.++... ++.++... ......++....+.
T Consensus 1426 ~g~~vll~GppGtGKT~LA~ala~ea~--~~G~~v~Fi~~e~~~~~l~-----a~~~G~dl~~l~v~~~~~~E~~l~~~~ 1498 (2050)
T 3cmu_A 1426 MGRIVEIYGPESSGKTTLTLQVIAAAQ--REGKTCAFIDAEHALDPIY-----ARKLGVDIDNLLCSQPDTGEQALEICD 1498 (2050)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHHHH--TTTCCEEEECTTSCCCHHH-----HHHTTCCTTTCEEECCSSHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH--HcCCcEEEEEcccccCHHH-----HHHcCCCchhceeecCChHHHHHHHHH
Confidence 457899999999999999999988432 2223578888887766655 44444211 11223345555555
Q ss_pred HHhc-CceEEEEEecCC
Q 002308 251 ESIA-GKRFLLVLDDVW 266 (938)
Q Consensus 251 ~~l~-~~~~LlVlDdv~ 266 (938)
+..+ .+.-+||+|.+.
T Consensus 1499 ~lvr~~~~~lVVIDsi~ 1515 (2050)
T 3cmu_A 1499 ALARSGAVDVIVVDSVA 1515 (2050)
T ss_dssp HHHHHTCCSEEEESCGG
T ss_pred HHHhcCCCCEEEEcChh
Confidence 5443 566799999984
No 364
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=92.22 E-value=0.073 Score=51.53 Aligned_cols=24 Identities=25% Similarity=0.243 Sum_probs=21.3
Q ss_pred CeEEEEEEccCCChHHHHHHHHhh
Q 002308 176 GLHIISIVGMGGIGKTTLAQLACN 199 (938)
Q Consensus 176 ~~~vv~i~G~~GiGKTtLa~~v~~ 199 (938)
...+|+|.|++|+||||+|+.+..
T Consensus 19 ~~~~I~l~G~~GsGKST~a~~La~ 42 (201)
T 2cdn_A 19 SHMRVLLLGPPGAGKGTQAVKLAE 42 (201)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 345899999999999999999877
No 365
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=92.21 E-value=0.27 Score=55.94 Aligned_cols=104 Identities=16% Similarity=0.219 Sum_probs=52.7
Q ss_pred EEEEEEccCCChHHHHHHHHhhhhhhhcccCeEEEEEeCCCCCHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHh----
Q 002308 178 HIISIVGMGGIGKTTLAQLACNHVEVKREFDKTLWVCVSETFDEFRIAKAMLEALTGSTSNLNALQSLLISIDESI---- 253 (938)
Q Consensus 178 ~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l---- 253 (938)
+++.|.|.+|+||||++..+....... ...+.+.+... .....+.+.++.. ..+...........+
T Consensus 205 ~~~~I~G~pGTGKTt~i~~l~~~l~~~---g~~Vl~~ApT~----~Aa~~L~e~~~~~---a~Tih~ll~~~~~~~~~~~ 274 (574)
T 3e1s_A 205 RLVVLTGGPGTGKSTTTKAVADLAESL---GLEVGLCAPTG----KAARRLGEVTGRT---ASTVHRLLGYGPQGFRHNH 274 (574)
T ss_dssp SEEEEECCTTSCHHHHHHHHHHHHHHT---TCCEEEEESSH----HHHHHHHHHHTSC---EEEHHHHTTEETTEESCSS
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHHhc---CCeEEEecCcH----HHHHHhHhhhccc---HHHHHHHHcCCcchhhhhh
Confidence 578999999999999999988743222 22344443332 1222333322211 111111100000000
Q ss_pred --cCceEEEEEecCCCCCccChhHHHHhhhCCCCCcEEEEEcC
Q 002308 254 --AGKRFLLVLDDVWDGDYIKWEPFYRCLKKGLHGSKILITTR 294 (938)
Q Consensus 254 --~~~~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtr 294 (938)
..+.-+||+|++...+...+..+...++ .+.++|+.--
T Consensus 275 ~~~~~~dvlIIDEasml~~~~~~~Ll~~~~---~~~~lilvGD 314 (574)
T 3e1s_A 275 LEPAPYDLLIVDEVSMMGDALMLSLLAAVP---PGARVLLVGD 314 (574)
T ss_dssp SSCCSCSEEEECCGGGCCHHHHHHHHTTSC---TTCEEEEEEC
T ss_pred cccccCCEEEEcCccCCCHHHHHHHHHhCc---CCCEEEEEec
Confidence 0122389999997665444555554444 5667777554
No 366
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=92.17 E-value=0.55 Score=51.64 Aligned_cols=55 Identities=13% Similarity=0.073 Sum_probs=38.4
Q ss_pred CeEEEEEEccCCChHHHHHHHHhhhhhhhcccCeEEEEEeCCCCCHHHHHHHHHHHhc
Q 002308 176 GLHIISIVGMGGIGKTTLAQLACNHVEVKREFDKTLWVCVSETFDEFRIAKAMLEALT 233 (938)
Q Consensus 176 ~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~ 233 (938)
...++.|.|.+|+||||+|..++........ ..++|++.. .+..++...++....
T Consensus 199 ~G~l~ii~G~pg~GKT~lal~ia~~~a~~~g-~~vl~~slE--~~~~~l~~R~~~~~~ 253 (444)
T 2q6t_A 199 PGSLNIIAARPAMGKTAFALTIAQNAALKEG-VGVGIYSLE--MPAAQLTLRMMCSEA 253 (444)
T ss_dssp TTCEEEEEECTTSCHHHHHHHHHHHHHHTTC-CCEEEEESS--SCHHHHHHHHHHHHT
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHHHhCC-CeEEEEECC--CCHHHHHHHHHHHHc
Confidence 4468999999999999999999885332211 357776654 456677777665443
No 367
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=92.15 E-value=0.082 Score=54.95 Aligned_cols=26 Identities=27% Similarity=0.299 Sum_probs=23.0
Q ss_pred CCeEEEEEEccCCChHHHHHHHHhhh
Q 002308 175 KGLHIISIVGMGGIGKTTLAQLACNH 200 (938)
Q Consensus 175 ~~~~vv~i~G~~GiGKTtLa~~v~~~ 200 (938)
....+|+|.|+.|+|||||++.+..-
T Consensus 88 ~~g~ivgI~G~sGsGKSTL~~~L~gl 113 (312)
T 3aez_A 88 PVPFIIGVAGSVAVGKSTTARVLQAL 113 (312)
T ss_dssp CCCEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCchHHHHHHHHHhh
Confidence 35689999999999999999998874
No 368
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=92.13 E-value=0.11 Score=50.79 Aligned_cols=24 Identities=21% Similarity=0.274 Sum_probs=21.7
Q ss_pred eEEEEEEccCCChHHHHHHHHhhh
Q 002308 177 LHIISIVGMGGIGKTTLAQLACNH 200 (938)
Q Consensus 177 ~~vv~i~G~~GiGKTtLa~~v~~~ 200 (938)
..+|+|.|+.|+||||+|+.+...
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~L~~~ 32 (215)
T 1nn5_A 9 GALIVLEGVDRAGKSTQSRKLVEA 32 (215)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH
Confidence 458999999999999999999874
No 369
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=92.11 E-value=0.079 Score=50.79 Aligned_cols=24 Identities=21% Similarity=0.263 Sum_probs=21.5
Q ss_pred CeEEEEEEccCCChHHHHHHHHhh
Q 002308 176 GLHIISIVGMGGIGKTTLAQLACN 199 (938)
Q Consensus 176 ~~~vv~i~G~~GiGKTtLa~~v~~ 199 (938)
...+|+|.|++|+||||+|+.+..
T Consensus 5 ~~~~I~l~G~~GsGKsT~~~~L~~ 28 (194)
T 1qf9_A 5 KPNVVFVLGGPGSGKGTQCANIVR 28 (194)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHH
T ss_pred cCcEEEEECCCCCCHHHHHHHHHH
Confidence 346899999999999999999877
No 370
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=92.09 E-value=0.065 Score=50.33 Aligned_cols=22 Identities=32% Similarity=0.397 Sum_probs=20.0
Q ss_pred EEEEEEccCCChHHHHHHHHhh
Q 002308 178 HIISIVGMGGIGKTTLAQLACN 199 (938)
Q Consensus 178 ~vv~i~G~~GiGKTtLa~~v~~ 199 (938)
.+|+|.|++|+||||+|+.+..
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~ 24 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELAR 24 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHH
Confidence 3689999999999999999887
No 371
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=92.09 E-value=0.074 Score=51.33 Aligned_cols=23 Identities=35% Similarity=0.424 Sum_probs=20.9
Q ss_pred EEEEEEccCCChHHHHHHHHhhh
Q 002308 178 HIISIVGMGGIGKTTLAQLACNH 200 (938)
Q Consensus 178 ~vv~i~G~~GiGKTtLa~~v~~~ 200 (938)
.+|+|.|++|+||||+|+.+...
T Consensus 13 ~~I~l~G~~GsGKsT~a~~L~~~ 35 (199)
T 2bwj_A 13 KIIFIIGGPGSGKGTQCEKLVEK 35 (199)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
Confidence 58999999999999999998873
No 372
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=91.99 E-value=0.089 Score=52.77 Aligned_cols=25 Identities=20% Similarity=0.263 Sum_probs=22.1
Q ss_pred CeEEEEEEccCCChHHHHHHHHhhh
Q 002308 176 GLHIISIVGMGGIGKTTLAQLACNH 200 (938)
Q Consensus 176 ~~~vv~i~G~~GiGKTtLa~~v~~~ 200 (938)
...+|+|.|+.|+|||||++.+...
T Consensus 24 ~g~iigI~G~~GsGKSTl~k~L~~~ 48 (245)
T 2jeo_A 24 RPFLIGVSGGTASGKSTVCEKIMEL 48 (245)
T ss_dssp CSEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHH
Confidence 4578999999999999999998773
No 373
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=91.95 E-value=0.22 Score=43.94 Aligned_cols=53 Identities=15% Similarity=0.268 Sum_probs=40.6
Q ss_pred CeeeecCCccc--cccccccCCCCccEEEcCCCCCcccccc-cccccCccceeecCCCc
Q 002308 595 RYLNLSDQKIK--KLPETLCELYNLEKLDISGCSDLRELPK-GIGKLINMKHLLNSGTR 650 (938)
Q Consensus 595 ~~L~L~~~~i~--~lp~~i~~l~~L~~L~l~~~~~l~~lp~-~i~~l~~L~~L~l~~~~ 650 (938)
..++.+++.++ .+|..+. .+|++|+|++|. +..+|. .|..+++|+.|+|++|.
T Consensus 11 ~~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~-l~~l~~~~f~~l~~L~~L~L~~NP 66 (130)
T 3rfe_A 11 TLVDCGRRGLTWASLPTAFP--VDTTELVLTGNN-LTALPPGLLDALPALRTAHLGANP 66 (130)
T ss_dssp TEEECCSSCCCTTTSCSCCC--TTCSEEECTTSC-CSSCCTTTGGGCTTCCEEECCSSC
T ss_pred CEEEeCCCCCccccCCCCCC--cCCCEEECCCCc-CCccChhhhhhccccCEEEecCCC
Confidence 46788888888 8886543 468999999998 555655 46778889999998874
No 374
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=91.93 E-value=0.077 Score=51.63 Aligned_cols=25 Identities=16% Similarity=0.294 Sum_probs=21.9
Q ss_pred CeEEEEEEccCCChHHHHHHHHhhh
Q 002308 176 GLHIISIVGMGGIGKTTLAQLACNH 200 (938)
Q Consensus 176 ~~~vv~i~G~~GiGKTtLa~~v~~~ 200 (938)
...+++|+|+.|+|||||++.+..-
T Consensus 19 ~Gei~~l~GpnGsGKSTLl~~l~gl 43 (207)
T 1znw_A 19 VGRVVVLSGPSAVGKSTVVRCLRER 43 (207)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhh
Confidence 3468999999999999999998873
No 375
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=91.92 E-value=0.24 Score=47.56 Aligned_cols=22 Identities=36% Similarity=0.539 Sum_probs=20.1
Q ss_pred EEEEEccCCChHHHHHHHHhhh
Q 002308 179 IISIVGMGGIGKTTLAQLACNH 200 (938)
Q Consensus 179 vv~i~G~~GiGKTtLa~~v~~~ 200 (938)
.|+|.|+.|+||||+++.+...
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~ 23 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQY 23 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999999874
No 376
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=91.87 E-value=0.22 Score=49.27 Aligned_cols=45 Identities=27% Similarity=0.362 Sum_probs=31.2
Q ss_pred CeEEEEEEccCCChHHHHHHHHhhhhhhh---c-ccCeEEEEEeCCCCC
Q 002308 176 GLHIISIVGMGGIGKTTLAQLACNHVEVK---R-EFDKTLWVCVSETFD 220 (938)
Q Consensus 176 ~~~vv~i~G~~GiGKTtLa~~v~~~~~~~---~-~f~~~~wv~~~~~~~ 220 (938)
...+++|+|+.|+|||||++.++...... . .-..++|+.......
T Consensus 24 ~G~~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~~~~~ 72 (231)
T 4a74_A 24 TQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFR 72 (231)
T ss_dssp SSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCC
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEECCCCCC
Confidence 45799999999999999999997632111 1 124577877655433
No 377
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=91.84 E-value=0.085 Score=50.63 Aligned_cols=22 Identities=36% Similarity=0.501 Sum_probs=20.2
Q ss_pred EEEEEccCCChHHHHHHHHhhh
Q 002308 179 IISIVGMGGIGKTTLAQLACNH 200 (938)
Q Consensus 179 vv~i~G~~GiGKTtLa~~v~~~ 200 (938)
+|+|.|+.|+||||+|+.+...
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~ 23 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEY 23 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999999873
No 378
>1ny5_A Transcriptional regulator (NTRC family); AAA+ ATPase, sigma54 activator, bacterial transcription, DIM transcription; HET: ADP; 2.40A {Aquifex aeolicus} SCOP: c.23.1.1 c.37.1.20 PDB: 1ny6_A* 3m0e_A* 1zy2_A*
Probab=91.79 E-value=0.77 Score=49.38 Aligned_cols=129 Identities=19% Similarity=0.135 Sum_probs=66.6
Q ss_pred ceecchhhHHHHHHHHhccCcccCCCeEEEEEEccCCChHHHHHHHHhhhhhhhcccCeEEEEEeCCCCCHHHHHHHHHH
Q 002308 151 EICGRVGERNALLSMLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNHVEVKREFDKTLWVCVSETFDEFRIAKAMLE 230 (938)
Q Consensus 151 ~~vGr~~~~~~l~~~l~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~ 230 (938)
.++|....+.++.+.+..-.. ... .|.|.|..|+|||++|+.+.... ...-...+-++++.- . ..++ -.
T Consensus 138 ~~ig~s~~m~~l~~~i~~~a~---~~~-~vli~Ge~GtGK~~lAr~ih~~s--~r~~~~fv~v~~~~~-~-~~~~---~~ 206 (387)
T 1ny5_A 138 EYVFESPKMKEILEKIKKISC---AEC-PVLITGESGVGKEVVARLIHKLS--DRSKEPFVALNVASI-P-RDIF---EA 206 (387)
T ss_dssp CCCCCSHHHHHHHHHHHHHTT---CCS-CEEEECSTTSSHHHHHHHHHHHS--TTTTSCEEEEETTTS-C-HHHH---HH
T ss_pred hhhhccHHhhHHHHHHHHhcC---CCC-CeEEecCCCcCHHHHHHHHHHhc--CCCCCCeEEEecCCC-C-HHHH---HH
Confidence 466766677777766654332 122 35999999999999999887742 111122334454432 2 2222 12
Q ss_pred HhcCCC----CCCCcHHHHHHHHHHHhcCceEEEEEecCCCCCccChhHHHHhhhCCC-----------CCcEEEEEcCC
Q 002308 231 ALTGST----SNLNALQSLLISIDESIAGKRFLLVLDDVWDGDYIKWEPFYRCLKKGL-----------HGSKILITTRK 295 (938)
Q Consensus 231 ~l~~~~----~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~~~~~~~l~~~l~~~~-----------~gs~ilvTtr~ 295 (938)
++.+.. .+.... ....+. . .+ .-.|+||++..........+...+..+. ...+||.||..
T Consensus 207 elfg~~~g~~tga~~~--~~g~~~-~-a~-~gtlfldei~~l~~~~q~~Ll~~l~~~~~~~~g~~~~~~~~~rii~at~~ 281 (387)
T 1ny5_A 207 ELFGYEKGAFTGAVSS--KEGFFE-L-AD-GGTLFLDEIGELSLEAQAKLLRVIESGKFYRLGGRKEIEVNVRILAATNR 281 (387)
T ss_dssp HHHCBCTTSSTTCCSC--BCCHHH-H-TT-TSEEEEESGGGCCHHHHHHHHHHHHHSEECCBTCCSBEECCCEEEEEESS
T ss_pred HhcCCCCCCCCCcccc--cCCcee-e-CC-CcEEEEcChhhCCHHHHHHHHHHHhcCcEEeCCCCceeeccEEEEEeCCC
Confidence 232211 111000 000111 1 11 2366799998776555566766665421 24567776654
No 379
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=91.79 E-value=0.081 Score=51.81 Aligned_cols=25 Identities=20% Similarity=0.219 Sum_probs=22.1
Q ss_pred CeEEEEEEccCCChHHHHHHHHhhh
Q 002308 176 GLHIISIVGMGGIGKTTLAQLACNH 200 (938)
Q Consensus 176 ~~~vv~i~G~~GiGKTtLa~~v~~~ 200 (938)
...+++|+|+.|+|||||++.+...
T Consensus 15 ~G~ii~l~GpsGsGKSTLlk~L~g~ 39 (219)
T 1s96_A 15 QGTLYIVSAPSGAGKSSLIQALLKT 39 (219)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcc
Confidence 4568999999999999999998873
No 380
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=91.77 E-value=0.17 Score=52.73 Aligned_cols=25 Identities=36% Similarity=0.372 Sum_probs=22.4
Q ss_pred CCeEEEEEEccCCChHHHHHHHHhh
Q 002308 175 KGLHIISIVGMGGIGKTTLAQLACN 199 (938)
Q Consensus 175 ~~~~vv~i~G~~GiGKTtLa~~v~~ 199 (938)
....+|+|.|+.|+|||||++.+..
T Consensus 78 ~~g~iigI~G~~GsGKSTl~~~L~~ 102 (308)
T 1sq5_A 78 RIPYIISIAGSVAVGKSTTARVLQA 102 (308)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 3567999999999999999999887
No 381
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=91.76 E-value=0.085 Score=52.99 Aligned_cols=23 Identities=35% Similarity=0.371 Sum_probs=21.0
Q ss_pred eEEEEEEccCCChHHHHHHHHhh
Q 002308 177 LHIISIVGMGGIGKTTLAQLACN 199 (938)
Q Consensus 177 ~~vv~i~G~~GiGKTtLa~~v~~ 199 (938)
..+|+|.|+.|+||||+++.++.
T Consensus 27 ~~~i~l~G~~GsGKSTl~k~La~ 49 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGTVCQRIAQ 49 (246)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999985
No 382
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=91.75 E-value=0.11 Score=51.11 Aligned_cols=39 Identities=23% Similarity=0.218 Sum_probs=29.0
Q ss_pred hhhHHHHHHHHhccCcccCCCeEEEEEEccCCChHHHHHHHHhhh
Q 002308 156 VGERNALLSMLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNH 200 (938)
Q Consensus 156 ~~~~~~l~~~l~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~v~~~ 200 (938)
.+..+.+.+.+. .....+|+|+|.+|+|||||+..+...
T Consensus 15 ~~~~~~~~~~~~------~~~~~~i~i~G~~g~GKTTl~~~l~~~ 53 (221)
T 2wsm_A 15 KRLAEKNREALR------ESGTVAVNIMGAIGSGKTLLIERTIER 53 (221)
T ss_dssp HHHHHHHHHHHH------HHTCEEEEEEECTTSCHHHHHHHHHHH
T ss_pred HHHHHHHHHhhc------ccCceEEEEEcCCCCCHHHHHHHHHHH
Confidence 344555555543 225689999999999999999998874
No 383
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=91.73 E-value=0.062 Score=51.05 Aligned_cols=23 Identities=39% Similarity=0.340 Sum_probs=16.7
Q ss_pred eEEEEEEccCCChHHHHHHHHhh
Q 002308 177 LHIISIVGMGGIGKTTLAQLACN 199 (938)
Q Consensus 177 ~~vv~i~G~~GiGKTtLa~~v~~ 199 (938)
..+|.|.|++|+||||+|+.+..
T Consensus 5 ~~~I~l~G~~GsGKST~a~~La~ 27 (183)
T 2vli_A 5 SPIIWINGPFGVGKTHTAHTLHE 27 (183)
T ss_dssp CCEEEEECCC----CHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999999999876
No 384
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=91.72 E-value=0.56 Score=48.24 Aligned_cols=38 Identities=29% Similarity=0.226 Sum_probs=27.3
Q ss_pred eEEEEEEccCCChHHHHHHHHhhhhhhhcccCeEEEEEeC
Q 002308 177 LHIISIVGMGGIGKTTLAQLACNHVEVKREFDKTLWVCVS 216 (938)
Q Consensus 177 ~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~ 216 (938)
..+++++|.+|+||||++..++.... ..=..+.++...
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~~~--~~g~~v~l~~~D 135 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYFYK--KKGFKVGLVGAD 135 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHHHH--HTTCCEEEEECC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHH--HCCCeEEEEecC
Confidence 57899999999999999999887432 221245555543
No 385
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=91.72 E-value=0.083 Score=51.97 Aligned_cols=23 Identities=26% Similarity=0.222 Sum_probs=20.7
Q ss_pred eEEEEEEccCCChHHHHHHHHhh
Q 002308 177 LHIISIVGMGGIGKTTLAQLACN 199 (938)
Q Consensus 177 ~~vv~i~G~~GiGKTtLa~~v~~ 199 (938)
...|+|.|++|+||||+|+.++.
T Consensus 4 ~~~I~l~G~~GsGKsT~a~~La~ 26 (220)
T 1aky_A 4 SIRMVLIGPPGAGKGTQAPNLQE 26 (220)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 35789999999999999999877
No 386
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=91.70 E-value=0.07 Score=52.39 Aligned_cols=24 Identities=33% Similarity=0.465 Sum_probs=21.3
Q ss_pred eEEEEEEccCCChHHHHHHHHhhh
Q 002308 177 LHIISIVGMGGIGKTTLAQLACNH 200 (938)
Q Consensus 177 ~~vv~i~G~~GiGKTtLa~~v~~~ 200 (938)
..+++|+|+.|+|||||++.+...
T Consensus 23 G~~~~lvGpsGsGKSTLl~~L~g~ 46 (218)
T 1z6g_A 23 IYPLVICGPSGVGKGTLIKKLLNE 46 (218)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHhh
Confidence 458999999999999999998873
No 387
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=91.69 E-value=0.35 Score=52.89 Aligned_cols=42 Identities=29% Similarity=0.482 Sum_probs=29.8
Q ss_pred CeEEEEEEccCCChHHHHHHHHhhhhhhhcccCeEEEEEeCCCCC
Q 002308 176 GLHIISIVGMGGIGKTTLAQLACNHVEVKREFDKTLWVCVSETFD 220 (938)
Q Consensus 176 ~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~ 220 (938)
...+++|+|..|+|||||++.++.... . ....+++.....+.
T Consensus 292 ~GeVI~LVGpNGSGKTTLl~~LAgll~--~-~~G~V~l~g~D~~r 333 (503)
T 2yhs_A 292 APFVILMVGVNGVGKTTTIGKLARQFE--Q-QGKSVMLAAGDTFR 333 (503)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHHHHHH--H-TTCCEEEECCCTTC
T ss_pred CCeEEEEECCCcccHHHHHHHHHHHhh--h-cCCeEEEecCcccc
Confidence 467999999999999999999987432 2 23445555444444
No 388
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=91.62 E-value=0.083 Score=55.95 Aligned_cols=110 Identities=9% Similarity=0.106 Sum_probs=58.3
Q ss_pred eEEEEEEccCCChHHHHHHHHhhhhhhhcccCeEEEEEeCCCCCHH--HHHHHHHHHhcCCCCCCCcHHHHHHHHHHHhc
Q 002308 177 LHIISIVGMGGIGKTTLAQLACNHVEVKREFDKTLWVCVSETFDEF--RIAKAMLEALTGSTSNLNALQSLLISIDESIA 254 (938)
Q Consensus 177 ~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~--~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~ 254 (938)
..+++|.|+.|+||||+.+.+... ........++ .+.++.... .. ..+..+... .... ......+...+.
T Consensus 123 ~g~i~I~GptGSGKTTlL~~l~g~--~~~~~~~~i~-t~ed~~e~~~~~~-~~~v~q~~~-~~~~---~~~~~~La~aL~ 194 (356)
T 3jvv_A 123 RGLVLVTGPTGSGKSTTLAAMLDY--LNNTKYHHIL-TIEDPIEFVHESK-KCLVNQREV-HRDT---LGFSEALRSALR 194 (356)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHHH--HHHHCCCEEE-EEESSCCSCCCCS-SSEEEEEEB-TTTB---SCHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHHhc--ccCCCCcEEE-EccCcHHhhhhcc-ccceeeeee-cccc---CCHHHHHHHHhh
Confidence 359999999999999999998874 2222122222 222211100 00 000000000 0011 123346777788
Q ss_pred CceEEEEEecCCCCCccChhHHHHhhhCCCCCcEEEEEcCChhhh
Q 002308 255 GKRFLLVLDDVWDGDYIKWEPFYRCLKKGLHGSKILITTRKESIV 299 (938)
Q Consensus 255 ~~~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtr~~~v~ 299 (938)
..+=+|++|+..+. ..+..+..... .|..||+|+-..+..
T Consensus 195 ~~PdvillDEp~d~--e~~~~~~~~~~---~G~~vl~t~H~~~~~ 234 (356)
T 3jvv_A 195 EDPDIILVGEMRDL--ETIRLALTAAE---TGHLVFGTLHTTSAA 234 (356)
T ss_dssp SCCSEEEESCCCSH--HHHHHHHHHHH---TTCEEEEEESCSSHH
T ss_pred hCcCEEecCCCCCH--HHHHHHHHHHh---cCCEEEEEEccChHH
Confidence 88889999999642 33333333322 366688888766544
No 389
>3dzd_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; HET: ADP; 2.40A {Aquifex aeolicus} PDB: 1zit_A 2jrl_A
Probab=91.56 E-value=0.31 Score=52.05 Aligned_cols=120 Identities=16% Similarity=0.085 Sum_probs=60.5
Q ss_pred CceecchhhHHHHHHHHhccCcccCCCeEEEEEEccCCChHHHHHHHHhhhhhhhcccCeEEEEEeCCCCCHHHHHHHHH
Q 002308 150 EEICGRVGERNALLSMLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNHVEVKREFDKTLWVCVSETFDEFRIAKAML 229 (938)
Q Consensus 150 ~~~vGr~~~~~~l~~~l~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 229 (938)
..++|....+.++...+..... ....|.|.|.+|+||+++|+.+....... ...+-++++.-.. ..+..++.
T Consensus 129 ~~~ig~s~~~~~~~~~~~~~a~----~~~~vli~GesGtGKe~lAr~ih~~s~r~---~~fv~vnc~~~~~-~~~~~~lf 200 (368)
T 3dzd_A 129 IEFVGEHPKILEIKRLIPKIAK----SKAPVLITGESGTGKEIVARLIHRYSGRK---GAFVDLNCASIPQ-ELAESELF 200 (368)
T ss_dssp CCCCCCSHHHHHHHHHHHHHHT----SCSCEEEECCTTSSHHHHHHHHHHHHCCC---SCEEEEESSSSCT-TTHHHHHH
T ss_pred ccccccchHHHHHHhhhhhhhc----cchhheEEeCCCchHHHHHHHHHHhcccc---CCcEEEEcccCCh-HHHHHHhc
Confidence 3578877776666665543221 12347799999999999999987742211 2233344443211 11111111
Q ss_pred HHhcCCCCCCCcHHHHHHHHHHHhcCceEEEEEecCCCCCccChhHHHHhhhC
Q 002308 230 EALTGSTSNLNALQSLLISIDESIAGKRFLLVLDDVWDGDYIKWEPFYRCLKK 282 (938)
Q Consensus 230 ~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~~~~~~~l~~~l~~ 282 (938)
..-.+...+..... ...+. . .+. --|+||++..........+...+..
T Consensus 201 g~~~g~~tga~~~~--~g~~~-~-a~~-gtlfldei~~l~~~~Q~~Ll~~l~~ 248 (368)
T 3dzd_A 201 GHEKGAFTGALTRK--KGKLE-L-ADQ-GTLFLDEVGELDQRVQAKLLRVLET 248 (368)
T ss_dssp EECSCSSSSCCCCE--ECHHH-H-TTT-SEEEEETGGGSCHHHHHHHHHHHHH
T ss_pred CccccccCCccccc--CChHh-h-cCC-CeEEecChhhCCHHHHHHHHHHHHh
Confidence 11111111111000 00111 1 122 2588999988766666677777754
No 390
>3vr4_D V-type sodium ATPase subunit D; V-ATPase, rotary motor, P-loop, hydrolas ATPase, ATP binding; HET: MSE B3P; 2.17A {Enterococcus hirae} PDB: 3vr3_D* 3vr2_D* 3vr5_D 3vr6_D*
Probab=91.55 E-value=0.15 Score=54.96 Aligned_cols=86 Identities=14% Similarity=0.200 Sum_probs=50.0
Q ss_pred EEEEEEccCCChHHHHHHHHhhhhhhhcccC----eEEEEEeCCC-CCHHHHHHHHHHHh--c-----CCCCCCCcHHHH
Q 002308 178 HIISIVGMGGIGKTTLAQLACNHVEVKREFD----KTLWVCVSET-FDEFRIAKAMLEAL--T-----GSTSNLNALQSL 245 (938)
Q Consensus 178 ~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~----~~~wv~~~~~-~~~~~~~~~i~~~l--~-----~~~~~~~~~~~~ 245 (938)
..++|.|.+|+|||+|+.++++.... +-+ .++++-+++. ..+.++.+++...= . ....+.......
T Consensus 152 Qr~~Ifgg~G~GKt~L~~~Ia~~~~~--~~d~~~~~~V~~~iGeR~~Ev~e~~~~~~~~g~~~rtvvV~atsd~p~~~r~ 229 (465)
T 3vr4_D 152 QKLPVFSGSGLPHKELAAQIARQATV--LDSSDDFAVVFAAIGITFEEAEFFMEDFRQTGAIDRSVMFMNLANDPAIERI 229 (465)
T ss_dssp CBCCEEECTTSCHHHHHHHHHHHCBC--SSCSSCEEEEEEEEEECHHHHHHHHHHHHHHTGGGGEEEEEEETTSCHHHHH
T ss_pred CEEEEeCCCCcChHHHHHHHHHHHHh--ccCCCceEEEEEEecCCcHHHHHHHHHHhhcCCccceEEEEECCCCCHHHHH
Confidence 45789999999999999998885332 112 5566666643 34455666654431 1 011112111111
Q ss_pred -----HHHHHHHhc---CceEEEEEecC
Q 002308 246 -----LISIDESIA---GKRFLLVLDDV 265 (938)
Q Consensus 246 -----~~~l~~~l~---~~~~LlVlDdv 265 (938)
.-.+.++++ ++.+|+++||+
T Consensus 230 ~a~~~a~tiAEyfrd~~G~~VLl~~Dsl 257 (465)
T 3vr4_D 230 ATPRMALTAAEYLAYEKGMHVLVIMTDM 257 (465)
T ss_dssp HHHHHHHHHHHHHHHTTCCEEEEEEECH
T ss_pred HHHHHHHHHHHHHHHhcCCeEEEEEcCh
Confidence 122344443 78999999998
No 391
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=91.50 E-value=0.088 Score=51.40 Aligned_cols=24 Identities=25% Similarity=0.311 Sum_probs=21.8
Q ss_pred eEEEEEEccCCChHHHHHHHHhhh
Q 002308 177 LHIISIVGMGGIGKTTLAQLACNH 200 (938)
Q Consensus 177 ~~vv~i~G~~GiGKTtLa~~v~~~ 200 (938)
..+|+|.|+.|+||||+|+.+...
T Consensus 10 ~~~I~l~G~~GsGKST~~~~L~~~ 33 (212)
T 2wwf_A 10 GKFIVFEGLDRSGKSTQSKLLVEY 33 (212)
T ss_dssp SCEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHH
Confidence 468999999999999999999874
No 392
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=91.45 E-value=0.14 Score=55.61 Aligned_cols=51 Identities=22% Similarity=0.305 Sum_probs=35.7
Q ss_pred CceecchhhHHHHHHHHhcc-------C-cccCCCeEEEEEEccCCChHHHHHHHHhhh
Q 002308 150 EEICGRVGERNALLSMLLCE-------S-SEQQKGLHIISIVGMGGIGKTTLAQLACNH 200 (938)
Q Consensus 150 ~~~vGr~~~~~~l~~~l~~~-------~-~~~~~~~~vv~i~G~~GiGKTtLa~~v~~~ 200 (938)
..++|.+...+.+..++... . .......+-+.++|++|+||||+|+.++..
T Consensus 15 ~~IvGqe~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~iLl~GppGtGKT~lar~lA~~ 73 (444)
T 1g41_A 15 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKL 73 (444)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHHHHSCTTTTTTCCCCCEEEECCTTSSHHHHHHHHHHH
T ss_pred HHhCCHHHHHHHHHHHHHHHHhhhccccccccccCCceEEEEcCCCCCHHHHHHHHHHH
Confidence 35789888888877666321 0 000113456899999999999999999883
No 393
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=91.41 E-value=0.1 Score=51.20 Aligned_cols=21 Identities=33% Similarity=0.466 Sum_probs=19.1
Q ss_pred EEEEEccCCChHHHHHHHHhh
Q 002308 179 IISIVGMGGIGKTTLAQLACN 199 (938)
Q Consensus 179 vv~i~G~~GiGKTtLa~~v~~ 199 (938)
.|+|.|++|+||||+|+.+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIE 22 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999999876
No 394
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=91.39 E-value=0.11 Score=53.24 Aligned_cols=24 Identities=38% Similarity=0.682 Sum_probs=21.5
Q ss_pred CeEEEEEEccCCChHHHHHHHHhh
Q 002308 176 GLHIISIVGMGGIGKTTLAQLACN 199 (938)
Q Consensus 176 ~~~vv~i~G~~GiGKTtLa~~v~~ 199 (938)
...+|+|.|+.|+||||+|+.+..
T Consensus 74 ~~~iI~I~G~~GSGKSTva~~La~ 97 (281)
T 2f6r_A 74 GLYVLGLTGISGSGKSSVAQRLKN 97 (281)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 467899999999999999999873
No 395
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=91.34 E-value=0.12 Score=50.40 Aligned_cols=25 Identities=28% Similarity=0.244 Sum_probs=22.2
Q ss_pred CeEEEEEEccCCChHHHHHHHHhhh
Q 002308 176 GLHIISIVGMGGIGKTTLAQLACNH 200 (938)
Q Consensus 176 ~~~vv~i~G~~GiGKTtLa~~v~~~ 200 (938)
...+|.|.|+.|+||||+++.+...
T Consensus 24 ~~~~i~~~G~~GsGKsT~~~~l~~~ 48 (211)
T 1m7g_A 24 RGLTIWLTGLSASGKSTLAVELEHQ 48 (211)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHH
Confidence 4578999999999999999999874
No 396
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=91.29 E-value=0.1 Score=52.57 Aligned_cols=23 Identities=30% Similarity=0.481 Sum_probs=21.0
Q ss_pred eEEEEEEccCCChHHHHHHHHhh
Q 002308 177 LHIISIVGMGGIGKTTLAQLACN 199 (938)
Q Consensus 177 ~~vv~i~G~~GiGKTtLa~~v~~ 199 (938)
..+|+|.|+.|+||||+++.++.
T Consensus 27 g~~I~I~G~~GsGKSTl~k~La~ 49 (252)
T 4e22_A 27 APVITVDGPSGAGKGTLCKALAE 49 (252)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 35899999999999999999986
No 397
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=91.26 E-value=0.1 Score=51.67 Aligned_cols=23 Identities=30% Similarity=0.348 Sum_probs=20.8
Q ss_pred eEEEEEEccCCChHHHHHHHHhh
Q 002308 177 LHIISIVGMGGIGKTTLAQLACN 199 (938)
Q Consensus 177 ~~vv~i~G~~GiGKTtLa~~v~~ 199 (938)
...|+|.|++|+||||+|+.+..
T Consensus 7 ~~~I~l~G~~GsGKsT~a~~La~ 29 (227)
T 1zd8_A 7 LLRAVIMGAPGSGKGTVSSRITT 29 (227)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 45799999999999999999876
No 398
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=91.23 E-value=0.11 Score=50.99 Aligned_cols=21 Identities=24% Similarity=0.425 Sum_probs=19.0
Q ss_pred EEEEEccCCChHHHHHHHHhh
Q 002308 179 IISIVGMGGIGKTTLAQLACN 199 (938)
Q Consensus 179 vv~i~G~~GiGKTtLa~~v~~ 199 (938)
.|+|.|++|+||||+|+.+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVE 22 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999998876
No 399
>3gqb_B V-type ATP synthase beta chain; A3B3, V-ATPase, ATP synthesis, ATP-binding, hydrogen ION TRA hydrolase, ION transport; 2.80A {Thermus thermophilus HB8} PDB: 3a5c_D* 3a5d_D 3j0j_D*
Probab=91.17 E-value=0.15 Score=54.85 Aligned_cols=89 Identities=13% Similarity=0.226 Sum_probs=50.0
Q ss_pred eEEEEEEccCCChHHHHHHHHhhhhhhh--------cccC-eEEEEEeCCCC-CHHHHHHHHHHH--hc-----CCCCCC
Q 002308 177 LHIISIVGMGGIGKTTLAQLACNHVEVK--------REFD-KTLWVCVSETF-DEFRIAKAMLEA--LT-----GSTSNL 239 (938)
Q Consensus 177 ~~vv~i~G~~GiGKTtLa~~v~~~~~~~--------~~f~-~~~wv~~~~~~-~~~~~~~~i~~~--l~-----~~~~~~ 239 (938)
...++|.|.+|+|||+|+.++++..... ++=+ .++++-+++.. .+.++.+++.+. +. ....+.
T Consensus 147 GQr~~Ifgg~G~GKt~L~~~Ia~~~~a~~~~~~~~~d~~~~~~V~~~iGeR~~Ev~e~~~~l~~~g~~~rtvvv~~t~d~ 226 (464)
T 3gqb_B 147 GQKLPIFSGSGLPANEIAAQIARQATVRPDLSGEGEKEEPFAVVFAAMGITQRELSYFIQEFERTGALSRSVLFLNKADD 226 (464)
T ss_dssp TCBCCEEEETTSCHHHHHHHHHHHCBCCHHHHCCCSTTCCEEEEEEEEEECHHHHHHHHHHHHHTSGGGGEEEEEEETTS
T ss_pred CCEEEEecCCCCCchHHHHHHHHHHHhcccccccccCCCceEEEEEEecCchHHHHHHHHHhhhcccccceEEEEECCCC
Confidence 3467899999999999999998853321 1111 45566666433 444555554442 11 011112
Q ss_pred CcHHHH-----HHHHHHHhc---CceEEEEEecC
Q 002308 240 NALQSL-----LISIDESIA---GKRFLLVLDDV 265 (938)
Q Consensus 240 ~~~~~~-----~~~l~~~l~---~~~~LlVlDdv 265 (938)
...... .-.+.++++ ++.+|+++||+
T Consensus 227 p~~~r~~~~~~a~tiAEyfrd~~G~~VLl~~Ddl 260 (464)
T 3gqb_B 227 PTIERILTPRMALTVAEYLAFEHDYHVLVILTDM 260 (464)
T ss_dssp CTHHHHHHHHHHHHHHHHHHHTTCCEEEEEEETH
T ss_pred CHHHHHHHHHHHHHHHHHHHHhcCCeEEEEEcCh
Confidence 222111 122344443 78999999998
No 400
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=91.16 E-value=0.097 Score=54.15 Aligned_cols=25 Identities=28% Similarity=0.392 Sum_probs=22.3
Q ss_pred CeEEEEEEccCCChHHHHHHHHhhh
Q 002308 176 GLHIISIVGMGGIGKTTLAQLACNH 200 (938)
Q Consensus 176 ~~~vv~i~G~~GiGKTtLa~~v~~~ 200 (938)
...+++|+|+.|+||||+++.++..
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagl 125 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRY 125 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHH
Confidence 4569999999999999999999874
No 401
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=91.14 E-value=0.13 Score=50.50 Aligned_cols=23 Identities=30% Similarity=0.405 Sum_probs=20.6
Q ss_pred eEEEEEEccCCChHHHHHHHHhh
Q 002308 177 LHIISIVGMGGIGKTTLAQLACN 199 (938)
Q Consensus 177 ~~vv~i~G~~GiGKTtLa~~v~~ 199 (938)
..+|+|.|+.|+||||+++.+..
T Consensus 4 ~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999998864
No 402
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=91.14 E-value=0.15 Score=48.70 Aligned_cols=25 Identities=32% Similarity=0.260 Sum_probs=21.7
Q ss_pred CeEEEEEEccCCChHHHHHHHHhhh
Q 002308 176 GLHIISIVGMGGIGKTTLAQLACNH 200 (938)
Q Consensus 176 ~~~vv~i~G~~GiGKTtLa~~v~~~ 200 (938)
....|+|+|.+|+|||||+..+...
T Consensus 47 ~~~~i~vvG~~g~GKSsll~~l~~~ 71 (193)
T 2ged_A 47 YQPSIIIAGPQNSGKTSLLTLLTTD 71 (193)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 4567899999999999999998774
No 403
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=91.12 E-value=0.11 Score=50.44 Aligned_cols=24 Identities=25% Similarity=0.210 Sum_probs=21.2
Q ss_pred eEEEEEEccCCChHHHHHHHHhhh
Q 002308 177 LHIISIVGMGGIGKTTLAQLACNH 200 (938)
Q Consensus 177 ~~vv~i~G~~GiGKTtLa~~v~~~ 200 (938)
..+|+|.|+.|+||||+++.+...
T Consensus 4 ~~~I~l~G~~GsGKsT~~~~L~~~ 27 (204)
T 2v54_A 4 GALIVFEGLDKSGKTTQCMNIMES 27 (204)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHT
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHH
Confidence 357999999999999999998873
No 404
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=90.99 E-value=0.35 Score=50.64 Aligned_cols=105 Identities=14% Similarity=0.115 Sum_probs=53.9
Q ss_pred EEEEEEccCCChHHHHHHHHhhhhhhhcccCeEEEEEeCCCCCHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHhcCce
Q 002308 178 HIISIVGMGGIGKTTLAQLACNHVEVKREFDKTLWVCVSETFDEFRIAKAMLEALTGSTSNLNALQSLLISIDESIAGKR 257 (938)
Q Consensus 178 ~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~ 257 (938)
.+++|+|+.|.|||||++.+.... . .-...+.+.-........ .-..+..-.. ........+...+..++
T Consensus 172 ~~v~i~G~~GsGKTTll~~l~g~~--~-~~~g~i~i~~~~e~~~~~----~~~~i~~~~g---gg~~~r~~la~aL~~~p 241 (330)
T 2pt7_A 172 KNVIVCGGTGSGKTTYIKSIMEFI--P-KEERIISIEDTEEIVFKH----HKNYTQLFFG---GNITSADCLKSCLRMRP 241 (330)
T ss_dssp CCEEEEESTTSCHHHHHHHGGGGS--C-TTSCEEEEESSCCCCCSS----CSSEEEEECB---TTBCHHHHHHHHTTSCC
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC--c-CCCcEEEECCeecccccc----chhEEEEEeC---CChhHHHHHHHHhhhCC
Confidence 479999999999999999998742 1 124455554322111000 0000000000 11222344566677777
Q ss_pred EEEEEecCCCCCccChhHHHHhhhCCCCCcEEEEEcCChh
Q 002308 258 FLLVLDDVWDGDYIKWEPFYRCLKKGLHGSKILITTRKES 297 (938)
Q Consensus 258 ~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtr~~~ 297 (938)
=++++|+.... ..++ +...+..++. -+|+||-...
T Consensus 242 ~ilildE~~~~--e~~~-~l~~~~~g~~--tvi~t~H~~~ 276 (330)
T 2pt7_A 242 DRIILGELRSS--EAYD-FYNVLCSGHK--GTLTTLHAGS 276 (330)
T ss_dssp SEEEECCCCST--HHHH-HHHHHHTTCC--CEEEEEECSS
T ss_pred CEEEEcCCChH--HHHH-HHHHHhcCCC--EEEEEEcccH
Confidence 78999998652 2233 2333333221 2666665443
No 405
>2r9v_A ATP synthase subunit alpha; TM1612, structural genomics, JOI for structural genomics, JCSG, protein structure initiative ATP synthesis; HET: ATP PG4; 2.10A {Thermotoga maritima MSB8}
Probab=90.96 E-value=0.28 Score=53.43 Aligned_cols=95 Identities=18% Similarity=0.156 Sum_probs=53.0
Q ss_pred HHHHHhccCcccCCCeEEEEEEccCCChHHHHHH-HHhhhhhhhcccC-eEEEEEeCCCC-CHHHHHHHHHHHhcC----
Q 002308 162 LLSMLLCESSEQQKGLHIISIVGMGGIGKTTLAQ-LACNHVEVKREFD-KTLWVCVSETF-DEFRIAKAMLEALTG---- 234 (938)
Q Consensus 162 l~~~l~~~~~~~~~~~~vv~i~G~~GiGKTtLa~-~v~~~~~~~~~f~-~~~wv~~~~~~-~~~~~~~~i~~~l~~---- 234 (938)
+++.+..-. ....++|.|.+|+|||+||. .+++.. .-+ .++++-+++.. .+.++.+.+...=..
T Consensus 165 aID~l~Pig-----rGQR~~I~g~~g~GKT~Lal~~I~~~~----~~dv~~V~~~IGeR~~Ev~e~~~~~~~~g~m~rtv 235 (515)
T 2r9v_A 165 AIDSMIPIG-----RGQRELIIGDRQTGKTAIAIDTIINQK----GQGVYCIYVAIGQKKSAIARIIDKLRQYGAMEYTT 235 (515)
T ss_dssp HHHHHSCEE-----TTCBEEEEEETTSSHHHHHHHHHHTTT----TTTEEEEEEEESCCHHHHHHHHHHHHHTTGGGGEE
T ss_pred ccccccccc-----cCCEEEEEcCCCCCccHHHHHHHHHhh----cCCcEEEEEEcCCCcHHHHHHHHHHHhCCCcceeE
Confidence 555555322 33568999999999999964 666632 234 34677776644 344555555542110
Q ss_pred ---CCCCCCcHHHH-----HHHHHHHh--cCceEEEEEecC
Q 002308 235 ---STSNLNALQSL-----LISIDESI--AGKRFLLVLDDV 265 (938)
Q Consensus 235 ---~~~~~~~~~~~-----~~~l~~~l--~~~~~LlVlDdv 265 (938)
...+....... .-.+.+++ +++.+|+++||+
T Consensus 236 vV~atad~p~~~r~~a~~~a~tiAEyfrd~G~dVLli~Dsl 276 (515)
T 2r9v_A 236 VVVASASDPASLQYIAPYAGCAMGEYFAYSGRDALVVYDDL 276 (515)
T ss_dssp EEEECTTSCHHHHHHHHHHHHHHHHHHHTTTCEEEEEEETH
T ss_pred EEEECCCCCHHHHHHHHHHHHHHHHHHHHcCCcEEEEeccH
Confidence 11112111111 11233444 478999999998
No 406
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=90.84 E-value=0.095 Score=51.65 Aligned_cols=24 Identities=25% Similarity=0.206 Sum_probs=21.1
Q ss_pred eEEEEEEccCCChHHHHHHHHhhh
Q 002308 177 LHIISIVGMGGIGKTTLAQLACNH 200 (938)
Q Consensus 177 ~~vv~i~G~~GiGKTtLa~~v~~~ 200 (938)
...|.|.|++|+||||+|+.++..
T Consensus 5 ~~~I~l~G~~GsGKsT~~~~La~~ 28 (222)
T 1zak_A 5 PLKVMISGAPASGKGTQCELIKTK 28 (222)
T ss_dssp SCCEEEEESTTSSHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 357899999999999999998873
No 407
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=90.81 E-value=0.19 Score=56.76 Aligned_cols=25 Identities=32% Similarity=0.315 Sum_probs=22.3
Q ss_pred CeEEEEEEccCCChHHHHHHHHhhh
Q 002308 176 GLHIISIVGMGGIGKTTLAQLACNH 200 (938)
Q Consensus 176 ~~~vv~i~G~~GiGKTtLa~~v~~~ 200 (938)
...+++|.|+.|+|||||++.++..
T Consensus 280 ~G~i~~i~G~~GsGKSTLl~~l~g~ 304 (525)
T 1tf7_A 280 KDSIILATGATGTGKTLLVSRFVEN 304 (525)
T ss_dssp SSCEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHH
Confidence 4568999999999999999999874
No 408
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=90.77 E-value=0.42 Score=50.81 Aligned_cols=38 Identities=32% Similarity=0.442 Sum_probs=28.3
Q ss_pred HHHHHHHHhccCcccCCCeEEEEEEccCCChHHHHHHHHhhh
Q 002308 159 RNALLSMLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNH 200 (938)
Q Consensus 159 ~~~l~~~l~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~v~~~ 200 (938)
...+.+.+... .....+|+|+|.+|+|||||+..+...
T Consensus 65 ~~~~~~~~~~~----~~~~~~I~i~G~~G~GKSTl~~~L~~~ 102 (355)
T 3p32_A 65 AQQLLLRLLPD----SGNAHRVGITGVPGVGKSTAIEALGMH 102 (355)
T ss_dssp HHHHHHHHGGG----CCCSEEEEEECCTTSSHHHHHHHHHHH
T ss_pred HHHHHHHhHhh----cCCceEEEEECCCCCCHHHHHHHHHHH
Confidence 44455555432 236789999999999999999998774
No 409
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=90.76 E-value=0.11 Score=49.57 Aligned_cols=23 Identities=35% Similarity=0.486 Sum_probs=20.8
Q ss_pred EEEEEccCCChHHHHHHHHhhhh
Q 002308 179 IISIVGMGGIGKTTLAQLACNHV 201 (938)
Q Consensus 179 vv~i~G~~GiGKTtLa~~v~~~~ 201 (938)
+++|+|+.|+|||||++.++...
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g~~ 25 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASEVL 25 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHhhc
Confidence 68999999999999999998854
No 410
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=90.76 E-value=0.85 Score=45.10 Aligned_cols=23 Identities=30% Similarity=0.320 Sum_probs=18.5
Q ss_pred EEEEEEccCCChHHHHHHHHhhh
Q 002308 178 HIISIVGMGGIGKTTLAQLACNH 200 (938)
Q Consensus 178 ~vv~i~G~~GiGKTtLa~~v~~~ 200 (938)
+.+.|.|+.|+||||++....-+
T Consensus 77 ~~~~i~g~TGsGKTt~~~~~~~~ 99 (235)
T 3llm_A 77 SVVIIRGATGCGKTTQVPQFILD 99 (235)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHH
T ss_pred CEEEEEeCCCCCcHHhHHHHHhc
Confidence 47899999999999877665543
No 411
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=90.76 E-value=0.14 Score=52.93 Aligned_cols=25 Identities=36% Similarity=0.389 Sum_probs=22.6
Q ss_pred CeEEEEEEccCCChHHHHHHHHhhh
Q 002308 176 GLHIISIVGMGGIGKTTLAQLACNH 200 (938)
Q Consensus 176 ~~~vv~i~G~~GiGKTtLa~~v~~~ 200 (938)
...+++|+|+.|+||||+++.++..
T Consensus 99 ~g~vi~lvG~nGsGKTTll~~Lag~ 123 (302)
T 3b9q_A 99 KPAVIMIVGVNGGGKTTSLGKLAHR 123 (302)
T ss_dssp SCEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHH
Confidence 4579999999999999999999884
No 412
>2qe7_A ATP synthase subunit alpha; blockage of ATP hydrolysis, F1-ATPase, single analysis, thermoalkaliphilic, hydrolase; 3.06A {Bacillus SP} PDB: 1sky_B
Probab=90.74 E-value=0.28 Score=53.40 Aligned_cols=95 Identities=19% Similarity=0.168 Sum_probs=53.0
Q ss_pred HHHHHhccCcccCCCeEEEEEEccCCChHHHHHH-HHhhhhhhhcccC-eEEEEEeCCCC-CHHHHHHHHHHHhcCC---
Q 002308 162 LLSMLLCESSEQQKGLHIISIVGMGGIGKTTLAQ-LACNHVEVKREFD-KTLWVCVSETF-DEFRIAKAMLEALTGS--- 235 (938)
Q Consensus 162 l~~~l~~~~~~~~~~~~vv~i~G~~GiGKTtLa~-~v~~~~~~~~~f~-~~~wv~~~~~~-~~~~~~~~i~~~l~~~--- 235 (938)
+++.+..-. ....++|.|.+|+|||+||. .+.+.. .-+ .++++-+++.. .+.++.+.+...=...
T Consensus 152 aID~l~Pig-----rGQR~~Ifg~~g~GKT~Lal~~I~~~~----~~dv~~V~~~iGeR~~Ev~~~~~~~~~~g~m~~tv 222 (502)
T 2qe7_A 152 AIDSMIPIG-----RGQRELIIGDRQTGKTTIAIDTIINQK----GQDVICIYVAIGQKQSTVAGVVETLRQHDALDYTI 222 (502)
T ss_dssp HHHHSSCCB-----TTCBCEEEECSSSCHHHHHHHHHHGGG----SCSEEEEEEEESCCHHHHHHHHHHHHHTTCSTTEE
T ss_pred ecccccccc-----cCCEEEEECCCCCCchHHHHHHHHHhh----cCCcEEEEEECCCcchHHHHHHHHHhhCCCcceeE
Confidence 555555322 34568999999999999964 666632 234 34677777644 3445555555421111
Q ss_pred ----CCCCCcHHHH-----HHHHHHHh--cCceEEEEEecC
Q 002308 236 ----TSNLNALQSL-----LISIDESI--AGKRFLLVLDDV 265 (938)
Q Consensus 236 ----~~~~~~~~~~-----~~~l~~~l--~~~~~LlVlDdv 265 (938)
..+....... .-.+.+++ +++.+|+++||+
T Consensus 223 vV~atad~p~~~r~~a~~~a~tiAEyfrd~G~dVLl~~Dsl 263 (502)
T 2qe7_A 223 VVTASASEPAPLLYLAPYAGCAMGEYFMYKGKHALVVYDDL 263 (502)
T ss_dssp EEEECTTSCHHHHHHHHHHHHHHHHHHHTTTCEEEEEEECH
T ss_pred EEEECCCCCHHHHHHHHHHHHHHHHHHHHcCCcEEEEEecH
Confidence 1111111111 11233444 478999999998
No 413
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=90.60 E-value=0.18 Score=58.03 Aligned_cols=43 Identities=16% Similarity=0.282 Sum_probs=36.4
Q ss_pred CceecchhhHHHHHHHHhccCcccCCCeEEEEEEccCCChHHHHHHHHhhh
Q 002308 150 EEICGRVGERNALLSMLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNH 200 (938)
Q Consensus 150 ~~~vGr~~~~~~l~~~l~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~v~~~ 200 (938)
+.++|.+..++.+...+... ..+.|+|++|+||||||+.++..
T Consensus 41 ~~i~G~~~~l~~l~~~i~~g--------~~vll~Gp~GtGKTtlar~ia~~ 83 (604)
T 3k1j_A 41 DQVIGQEHAVEVIKTAANQK--------RHVLLIGEPGTGKSMLGQAMAEL 83 (604)
T ss_dssp HHCCSCHHHHHHHHHHHHTT--------CCEEEECCTTSSHHHHHHHHHHT
T ss_pred ceEECchhhHhhccccccCC--------CEEEEEeCCCCCHHHHHHHHhcc
Confidence 46899998888888887642 37899999999999999999884
No 414
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=90.56 E-value=0.44 Score=61.27 Aligned_cols=85 Identities=21% Similarity=0.171 Sum_probs=56.8
Q ss_pred CeEEEEEEccCCChHHHHHHHHhhhhhhhcccCeEEEEEeCCCCCHHHHHHHHHHHhcCCCC-----CCCcHHHHHHHHH
Q 002308 176 GLHIISIVGMGGIGKTTLAQLACNHVEVKREFDKTLWVCVSETFDEFRIAKAMLEALTGSTS-----NLNALQSLLISID 250 (938)
Q Consensus 176 ~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~-----~~~~~~~~~~~l~ 250 (938)
...++.|+|++|+||||||.+++.... ..=..++|++.....+... ++.++.... +..+.+++...+.
T Consensus 382 ~G~lilI~G~pGsGKTtLaLqia~~~a--~~G~~vlyis~E~s~~~~~-----a~~lGvd~~~L~I~~~~~~e~il~~~~ 454 (2050)
T 3cmu_A 382 MGRIVEIYGPESSGKTTLTLQVIAAAQ--REGKTCAFIDAEHALDPIY-----ARKLGVDIDNLLCSQPDTGEQALEICD 454 (2050)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHHHH--TTTCCEEEECTTSCCCHHH-----HHHTTCCTTTCEEECCSSHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHH--hcCCeEEEEEcCCCHHHHH-----HHHcCCCHHHeEEeCCCCHHHHHHHHH
Confidence 456999999999999999999988532 2224688888877776542 455554321 2345566666665
Q ss_pred HHhc-CceEEEEEecCCC
Q 002308 251 ESIA-GKRFLLVLDDVWD 267 (938)
Q Consensus 251 ~~l~-~~~~LlVlDdv~~ 267 (938)
...+ .+.-+||+|-+..
T Consensus 455 ~lv~~~~~~lIVIDSL~a 472 (2050)
T 3cmu_A 455 ALARSGAVDVIVVDSVAA 472 (2050)
T ss_dssp HHHHHTCCSEEEESCGGG
T ss_pred HHHHhcCCcEEEECCHHH
Confidence 4443 4556999999853
No 415
>2ck3_A ATP synthase subunit alpha\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1bmf_A* 1e1q_A* 1e1r_A* 1e79_A* 1h8h_A* 1nbm_A* 1ohh_A* 1qo1_A 1w0j_A* 1w0k_A* 1h8e_A* 2jdi_A* 2wss_A* 2w6j_A 2w6e_A 2w6g_A 2w6f_A 2w6h_A 2w6i_A 1cow_A* ...
Probab=90.56 E-value=0.4 Score=52.40 Aligned_cols=99 Identities=20% Similarity=0.219 Sum_probs=54.0
Q ss_pred HHHHHhccCcccCCCeEEEEEEccCCChHHHHH-HHHhhhhhhh----cccC-eEEEEEeCCCC-CHHHHHHHHHHHhc-
Q 002308 162 LLSMLLCESSEQQKGLHIISIVGMGGIGKTTLA-QLACNHVEVK----REFD-KTLWVCVSETF-DEFRIAKAMLEALT- 233 (938)
Q Consensus 162 l~~~l~~~~~~~~~~~~vv~i~G~~GiGKTtLa-~~v~~~~~~~----~~f~-~~~wv~~~~~~-~~~~~~~~i~~~l~- 233 (938)
+++.+..-. ....++|.|.+|+|||+|| ..+.+....- .+-+ .++++-+++.. .+.++.+.+...=.
T Consensus 152 aID~l~Pig-----rGQR~~I~g~~g~GKT~Lal~~I~~q~~~~~~~~~~~d~~~V~~~IGeR~~Ev~~~~~~~~~~g~m 226 (510)
T 2ck3_A 152 AVDSLVPIG-----RGQRELIIGDRQTGKTSIAIDTIINQKRFNDGTDEKKKLYCIYVAIGQKRSTVAQLVKRLTDADAM 226 (510)
T ss_dssp HHHHHSCCB-----TTCBCEEEESTTSSHHHHHHHHHHHTHHHHTSCCTTTCCEEEEEEESCCHHHHHHHHHHHHHTTCG
T ss_pred eeccccccc-----cCCEEEEecCCCCCchHHHHHHHHHHHhhccccccCCCeEEEEEECCCCcHHHHHHHHHHHhcCCc
Confidence 555555422 3456899999999999995 4566632210 1233 46777777644 34455555544211
Q ss_pred ------CCCCCCCcHHHH-----HHHHHHHh--cCceEEEEEecC
Q 002308 234 ------GSTSNLNALQSL-----LISIDESI--AGKRFLLVLDDV 265 (938)
Q Consensus 234 ------~~~~~~~~~~~~-----~~~l~~~l--~~~~~LlVlDdv 265 (938)
....+....... .-.+.+++ +++.+|+++||+
T Consensus 227 ~~tvvV~atad~p~~~r~~a~~~a~tiAEyfrd~G~dVLli~Dsl 271 (510)
T 2ck3_A 227 KYTIVVSATASDAAPLQYLAPYSGCSMGEYFRDNGKHALIIYDDL 271 (510)
T ss_dssp GGEEEEEECTTSCHHHHHHHHHHHHHHHHHHHTTTCEEEEEEETH
T ss_pred ccceEEEECCCCCHHHHHHHHHHHHHHHHHHHHcCCcEEEEEcCH
Confidence 011111111111 11233444 478999999998
No 416
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=90.52 E-value=0.14 Score=53.24 Aligned_cols=23 Identities=35% Similarity=0.429 Sum_probs=21.0
Q ss_pred EEEEEEccCCChHHHHHHHHhhh
Q 002308 178 HIISIVGMGGIGKTTLAQLACNH 200 (938)
Q Consensus 178 ~vv~i~G~~GiGKTtLa~~v~~~ 200 (938)
.+|+|.|+.|+||||||..++..
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~ 30 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKK 30 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHH
T ss_pred ceEEEECCCcCcHHHHHHHHHHH
Confidence 58999999999999999998873
No 417
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=90.44 E-value=0.12 Score=50.81 Aligned_cols=23 Identities=26% Similarity=0.445 Sum_probs=20.4
Q ss_pred EEEEEEccCCChHHHHHHHHhhh
Q 002308 178 HIISIVGMGGIGKTTLAQLACNH 200 (938)
Q Consensus 178 ~vv~i~G~~GiGKTtLa~~v~~~ 200 (938)
..|.|.|++|+||||+|+.+...
T Consensus 6 ~~I~l~G~~GsGKsT~a~~La~~ 28 (217)
T 3be4_A 6 HNLILIGAPGSGKGTQCEFIKKE 28 (217)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 46899999999999999998873
No 418
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=90.43 E-value=0.24 Score=49.56 Aligned_cols=40 Identities=20% Similarity=0.236 Sum_probs=28.8
Q ss_pred CeEEEEEEccCCChHHHHHHHHhhhhhhhcccCeEEEEEeCC
Q 002308 176 GLHIISIVGMGGIGKTTLAQLACNHVEVKREFDKTLWVCVSE 217 (938)
Q Consensus 176 ~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~ 217 (938)
...++.|.|++|+||||||..++.... ..=..++|++...
T Consensus 22 ~G~~~~i~G~~GsGKTtl~~~~~~~~~--~~~~~v~~~~~e~ 61 (247)
T 2dr3_A 22 ERNVVLLSGGPGTGKTIFSQQFLWNGL--KMGEPGIYVALEE 61 (247)
T ss_dssp TTCEEEEEECTTSSHHHHHHHHHHHHH--HTTCCEEEEESSS
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHH--hcCCeEEEEEccC
Confidence 346899999999999999988876422 1224577777544
No 419
>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}
Probab=90.42 E-value=0.5 Score=45.23 Aligned_cols=22 Identities=36% Similarity=0.539 Sum_probs=19.6
Q ss_pred EEEEEccCCChHHHHHHHHhhh
Q 002308 179 IISIVGMGGIGKTTLAQLACNH 200 (938)
Q Consensus 179 vv~i~G~~GiGKTtLa~~v~~~ 200 (938)
.|+|-|..|+||||.++.++..
T Consensus 2 fI~~EG~DGsGKsTq~~~L~~~ 23 (197)
T 3hjn_A 2 FITFEGIDGSGKSTQIQLLAQY 23 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 3678899999999999999884
No 420
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=90.40 E-value=0.14 Score=49.67 Aligned_cols=21 Identities=29% Similarity=0.471 Sum_probs=20.0
Q ss_pred EEEEEccCCChHHHHHHHHhh
Q 002308 179 IISIVGMGGIGKTTLAQLACN 199 (938)
Q Consensus 179 vv~i~G~~GiGKTtLa~~v~~ 199 (938)
+|+|.|+.|+||||+|+.+..
T Consensus 4 ~i~i~G~~GsGKst~~~~la~ 24 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAA 24 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 799999999999999999877
No 421
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=90.40 E-value=0.14 Score=50.27 Aligned_cols=23 Identities=17% Similarity=0.387 Sum_probs=20.9
Q ss_pred eEEEEEEccCCChHHHHHHHHhh
Q 002308 177 LHIISIVGMGGIGKTTLAQLACN 199 (938)
Q Consensus 177 ~~vv~i~G~~GiGKTtLa~~v~~ 199 (938)
..+|+|.|++|+||||+|+.+..
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la~ 31 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLAR 31 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 35899999999999999999886
No 422
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=90.38 E-value=0.08 Score=51.79 Aligned_cols=22 Identities=36% Similarity=0.582 Sum_probs=20.2
Q ss_pred EEEEEccCCChHHHHHHHHhhh
Q 002308 179 IISIVGMGGIGKTTLAQLACNH 200 (938)
Q Consensus 179 vv~i~G~~GiGKTtLa~~v~~~ 200 (938)
+|+|.|..|+||||+|+.+...
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~ 23 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGA 23 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHH
Confidence 6899999999999999998874
No 423
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=90.37 E-value=0.32 Score=50.57 Aligned_cols=42 Identities=21% Similarity=0.386 Sum_probs=29.3
Q ss_pred CCCeEEEEEEccCCChHHHHHHHHhhhhhhhcccCeEEEEEeCC
Q 002308 174 QKGLHIISIVGMGGIGKTTLAQLACNHVEVKREFDKTLWVCVSE 217 (938)
Q Consensus 174 ~~~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~ 217 (938)
....++|+|+|-||+||||+|..++...... . ..++-|+...
T Consensus 38 ~~~~~vI~v~~KGGvGKTT~a~nLA~~La~~-G-~~VlliD~D~ 79 (307)
T 3end_A 38 ITGAKVFAVYGKGGIGKSTTSSNLSAAFSIL-G-KRVLQIGCDP 79 (307)
T ss_dssp --CCEEEEEECSTTSSHHHHHHHHHHHHHHT-T-CCEEEEEESS
T ss_pred cCCceEEEEECCCCccHHHHHHHHHHHHHHC-C-CeEEEEeCCC
Confidence 3467889999999999999999888743222 1 2466676653
No 424
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=90.37 E-value=0.14 Score=51.53 Aligned_cols=24 Identities=29% Similarity=0.256 Sum_probs=21.4
Q ss_pred CeEEEEEEccCCChHHHHHHHHhh
Q 002308 176 GLHIISIVGMGGIGKTTLAQLACN 199 (938)
Q Consensus 176 ~~~vv~i~G~~GiGKTtLa~~v~~ 199 (938)
...+++|.|+.|+|||||++.++.
T Consensus 29 ~G~~~~l~GpnGsGKSTLl~~i~~ 52 (251)
T 2ehv_A 29 EGTTVLLTGGTGTGKTTFAAQFIY 52 (251)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHH
Confidence 446899999999999999999884
No 425
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=90.36 E-value=0.25 Score=49.76 Aligned_cols=25 Identities=24% Similarity=0.316 Sum_probs=22.2
Q ss_pred CeEEEEEEccCCChHHHHHHHHhhh
Q 002308 176 GLHIISIVGMGGIGKTTLAQLACNH 200 (938)
Q Consensus 176 ~~~vv~i~G~~GiGKTtLa~~v~~~ 200 (938)
...+++|+|+.|+||||+++.+...
T Consensus 24 ~g~~v~i~Gp~GsGKSTll~~l~g~ 48 (261)
T 2eyu_A 24 KMGLILVTGPTGSGKSTTIASMIDY 48 (261)
T ss_dssp SSEEEEEECSTTCSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCccHHHHHHHHHHh
Confidence 4569999999999999999998874
No 426
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=90.33 E-value=0.27 Score=51.23 Aligned_cols=25 Identities=40% Similarity=0.523 Sum_probs=22.5
Q ss_pred CeEEEEEEccCCChHHHHHHHHhhh
Q 002308 176 GLHIISIVGMGGIGKTTLAQLACNH 200 (938)
Q Consensus 176 ~~~vv~i~G~~GiGKTtLa~~v~~~ 200 (938)
...+++|+|.+|+||||++..++..
T Consensus 104 ~~~vI~ivG~~G~GKTT~~~~LA~~ 128 (320)
T 1zu4_A 104 RLNIFMLVGVNGTGKTTSLAKMANY 128 (320)
T ss_dssp SCEEEEEESSTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4679999999999999999998874
No 427
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=90.32 E-value=0.12 Score=51.66 Aligned_cols=22 Identities=36% Similarity=0.596 Sum_probs=20.5
Q ss_pred EEEEEEccCCChHHHHHHHHhh
Q 002308 178 HIISIVGMGGIGKTTLAQLACN 199 (938)
Q Consensus 178 ~vv~i~G~~GiGKTtLa~~v~~ 199 (938)
.+|+|.|+.|+||||+++.++.
T Consensus 49 ~~i~l~G~~GsGKSTl~~~La~ 70 (250)
T 3nwj_A 49 RSMYLVGMMGSGKTTVGKIMAR 70 (250)
T ss_dssp CCEEEECSTTSCHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999987
No 428
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=90.30 E-value=0.086 Score=52.33 Aligned_cols=23 Identities=30% Similarity=0.303 Sum_probs=16.4
Q ss_pred eEEEEEEccCCChHHHHHHHHh-h
Q 002308 177 LHIISIVGMGGIGKTTLAQLAC-N 199 (938)
Q Consensus 177 ~~vv~i~G~~GiGKTtLa~~v~-~ 199 (938)
..+++|.|+.|+|||||++.+. .
T Consensus 27 G~ii~l~Gp~GsGKSTl~~~L~~~ 50 (231)
T 3lnc_A 27 GVILVLSSPSGCGKTTVANKLLEK 50 (231)
T ss_dssp CCEEEEECSCC----CHHHHHHC-
T ss_pred CCEEEEECCCCCCHHHHHHHHHhc
Confidence 4689999999999999999988 5
No 429
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=90.29 E-value=0.088 Score=49.17 Aligned_cols=23 Identities=43% Similarity=0.440 Sum_probs=21.0
Q ss_pred EEEEEEccCCChHHHHHHHHhhh
Q 002308 178 HIISIVGMGGIGKTTLAQLACNH 200 (938)
Q Consensus 178 ~vv~i~G~~GiGKTtLa~~v~~~ 200 (938)
.+++|+|..|+|||||++.+...
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~ 25 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPI 25 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 47999999999999999999884
No 430
>2c61_A A-type ATP synthase non-catalytic subunit B; hydrolase, H+ ATPase, A1AO, ATP synthesis, hydrogen ION transport, ION transport; 1.5A {Methanosarcina mazei GO1} PDB: 3dsr_A* 3b2q_A* 2rkw_A* 3eiu_A*
Probab=90.23 E-value=0.2 Score=54.31 Aligned_cols=89 Identities=12% Similarity=0.165 Sum_probs=51.0
Q ss_pred eEEEEEEccCCChHHHHHHHHhhhhhhhcc--cCeEEEEEeCCCC-CHHHHHHHHHHHhcC-------CCCCCCcHHH--
Q 002308 177 LHIISIVGMGGIGKTTLAQLACNHVEVKRE--FDKTLWVCVSETF-DEFRIAKAMLEALTG-------STSNLNALQS-- 244 (938)
Q Consensus 177 ~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~--f~~~~wv~~~~~~-~~~~~~~~i~~~l~~-------~~~~~~~~~~-- 244 (938)
...++|.|.+|+|||+|+..++++....+. =+.++++-+++.. .+.++.+++...=.. ...+......
T Consensus 152 GQr~~Ifgg~G~GKt~Ll~~Ia~~~~~n~~~~~~~~V~~~iGER~~Ev~e~~~~~~~~g~m~rtvvV~~tsd~p~~~r~~ 231 (469)
T 2c61_A 152 GQKLPIFSASGLPHNEIALQIARQASVPGSESAFAVVFAAMGITNEEAQYFMSDFEKTGALERAVVFLNLADDPAVERIV 231 (469)
T ss_dssp TCBCCEEECTTSCHHHHHHHHHHHCBCTTCSSCEEEEEEEEEECHHHHHHHHHHHHHHSGGGGEEEEEEETTSCHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHhhccCCCCcEEEEEEccCCcHHHHHHHHHHHhccCccceEEEEECCCCCHHHHHH
Confidence 356788999999999999999886432111 1345666665533 445666666543110 1111111111
Q ss_pred ---HHHHHHHHh---cCceEEEEEecC
Q 002308 245 ---LLISIDESI---AGKRFLLVLDDV 265 (938)
Q Consensus 245 ---~~~~l~~~l---~~~~~LlVlDdv 265 (938)
..-.+.+++ +++.+|+++||+
T Consensus 232 ~~~~a~tiAEyfrdd~G~dVLl~~Dsl 258 (469)
T 2c61_A 232 TPRMALTAAEYLAYEHGMHVLVILTDI 258 (469)
T ss_dssp HHHHHHHHHHHHHHHHCCEEEEEEECH
T ss_pred HHHHHHHHHHHHHHhcCCeEEEEEeCH
Confidence 112233444 479999999997
No 431
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=90.19 E-value=0.14 Score=50.87 Aligned_cols=24 Identities=29% Similarity=0.429 Sum_probs=21.4
Q ss_pred CeEEEEEEccCCChHHHHHHHHhh
Q 002308 176 GLHIISIVGMGGIGKTTLAQLACN 199 (938)
Q Consensus 176 ~~~vv~i~G~~GiGKTtLa~~v~~ 199 (938)
...+++|+|+.|+|||||++.+..
T Consensus 30 ~Ge~~~iiG~nGsGKSTLl~~l~G 53 (235)
T 3tif_A 30 EGEFVSIMGPSGSGKSTMLNIIGC 53 (235)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTT
T ss_pred CCCEEEEECCCCCcHHHHHHHHhc
Confidence 346899999999999999999876
No 432
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=90.15 E-value=0.15 Score=49.89 Aligned_cols=21 Identities=33% Similarity=0.327 Sum_probs=19.2
Q ss_pred EEEEEccCCChHHHHHHHHhh
Q 002308 179 IISIVGMGGIGKTTLAQLACN 199 (938)
Q Consensus 179 vv~i~G~~GiGKTtLa~~v~~ 199 (938)
.|+|.|++|+||||+|+.+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIME 22 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 378999999999999999877
No 433
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=90.12 E-value=1.1 Score=51.30 Aligned_cols=25 Identities=32% Similarity=0.484 Sum_probs=21.8
Q ss_pred CeEEEEEEccCCChHHHHHHHHhhh
Q 002308 176 GLHIISIVGMGGIGKTTLAQLACNH 200 (938)
Q Consensus 176 ~~~vv~i~G~~GiGKTtLa~~v~~~ 200 (938)
...+++|+|+.|.|||||++.+..-
T Consensus 368 ~G~~~~ivG~sGsGKSTll~~l~g~ 392 (582)
T 3b5x_A 368 QGKTVALVGRSGSGKSTIANLFTRF 392 (582)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 4468999999999999999998763
No 434
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=90.12 E-value=0.14 Score=50.98 Aligned_cols=22 Identities=23% Similarity=0.440 Sum_probs=20.7
Q ss_pred EEEEEEccCCChHHHHHHHHhh
Q 002308 178 HIISIVGMGGIGKTTLAQLACN 199 (938)
Q Consensus 178 ~vv~i~G~~GiGKTtLa~~v~~ 199 (938)
.+++|+|+.|+|||||.+.++.
T Consensus 25 e~~~liG~nGsGKSTLl~~l~G 46 (240)
T 2onk_A 25 DYCVLLGPTGAGKSVFLELIAG 46 (240)
T ss_dssp SEEEEECCTTSSHHHHHHHHHT
T ss_pred EEEEEECCCCCCHHHHHHHHhC
Confidence 6899999999999999999876
No 435
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=90.11 E-value=0.15 Score=50.14 Aligned_cols=21 Identities=38% Similarity=0.428 Sum_probs=19.4
Q ss_pred EEEEEccCCChHHHHHHHHhh
Q 002308 179 IISIVGMGGIGKTTLAQLACN 199 (938)
Q Consensus 179 vv~i~G~~GiGKTtLa~~v~~ 199 (938)
.|+|.|++|+||||+|+.+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~ 22 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKD 22 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 588999999999999999877
No 436
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=90.11 E-value=0.18 Score=52.31 Aligned_cols=24 Identities=21% Similarity=0.360 Sum_probs=21.7
Q ss_pred CeEEEEEEccCCChHHHHHHHHhh
Q 002308 176 GLHIISIVGMGGIGKTTLAQLACN 199 (938)
Q Consensus 176 ~~~vv~i~G~~GiGKTtLa~~v~~ 199 (938)
..++|+|.|+.|+||||||..++.
T Consensus 39 ~~~lIvI~GPTgsGKTtLa~~LA~ 62 (339)
T 3a8t_A 39 KEKLLVLMGATGTGKSRLSIDLAA 62 (339)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHT
T ss_pred CCceEEEECCCCCCHHHHHHHHHH
Confidence 346899999999999999999887
No 437
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=90.10 E-value=0.16 Score=52.46 Aligned_cols=23 Identities=30% Similarity=0.323 Sum_probs=21.0
Q ss_pred eEEEEEEccCCChHHHHHHHHhh
Q 002308 177 LHIISIVGMGGIGKTTLAQLACN 199 (938)
Q Consensus 177 ~~vv~i~G~~GiGKTtLa~~v~~ 199 (938)
..+|.|+|+.|+||||||..++.
T Consensus 5 ~~~i~i~GptGsGKTtla~~La~ 27 (323)
T 3crm_A 5 PPAIFLMGPTAAGKTDLAMALAD 27 (323)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 35899999999999999999887
No 438
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=90.07 E-value=0.49 Score=45.86 Aligned_cols=105 Identities=16% Similarity=0.190 Sum_probs=54.7
Q ss_pred eEEEEEEccCCChHHHHHHHHhhhhhhhcccCeEEEEEeCCCCCHHHHHHHHHHHhcCCCC----------CCCcHHHHH
Q 002308 177 LHIISIVGMGGIGKTTLAQLACNHVEVKREFDKTLWVCVSETFDEFRIAKAMLEALTGSTS----------NLNALQSLL 246 (938)
Q Consensus 177 ~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~----------~~~~~~~~~ 246 (938)
.-.|.+.|.||+||||+|...+... ....++ +.++.+....+... ..+...+...+. ...+.+..
T Consensus 6 ~l~I~~~~kgGvGKTt~a~~la~~l-~~~G~~-V~v~d~D~q~~~~~--~al~~gl~~~~~~~~~~~~~~~~e~~l~~~- 80 (228)
T 2r8r_A 6 RLKVFLGAAPGVGKTYAMLQAAHAQ-LRQGVR-VMAGVVETHGRAET--EALLNGLPQQPLLRTEYRGMTLEEMDLDAL- 80 (228)
T ss_dssp CEEEEEESSTTSSHHHHHHHHHHHH-HHTTCC-EEEEECCCTTCHHH--HHHHTTSCBCCCEEEEETTEEEEECCHHHH-
T ss_pred eEEEEEECCCCCcHHHHHHHHHHHH-HHCCCC-EEEEEeCCCCChhH--HHHhcCccccCcceeecCCcccccccHHHH-
Confidence 3458889999999999998888753 233343 44444443222221 122222221110 01222221
Q ss_pred HHHHHHhcCceEEEEEecCCCC------CccChhHHHHhhhCCCCCcEEEEEcCC
Q 002308 247 ISIDESIAGKRFLLVLDDVWDG------DYIKWEPFYRCLKKGLHGSKILITTRK 295 (938)
Q Consensus 247 ~~l~~~l~~~~~LlVlDdv~~~------~~~~~~~l~~~l~~~~~gs~ilvTtr~ 295 (938)
+..+.=++|+|++-.. ....|..+...++ .|-.|+.|+.-
T Consensus 81 ------L~~~pdlvIVDElG~~~~~~~r~~~~~qDV~~~l~---sgidVitT~Nl 126 (228)
T 2r8r_A 81 ------LKAAPSLVLVDELAHTNAPGSRHTKRWQDIQELLA---AGIDVYTTVNV 126 (228)
T ss_dssp ------HHHCCSEEEESCTTCBCCTTCSSSBHHHHHHHHHH---TTCEEEEEEEG
T ss_pred ------HhcCCCEEEEeCCCCCCcccchhHHHHHHHHHHHc---CCCCEEEEccc
Confidence 2224559999987432 1224666665544 35557777763
No 439
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=90.05 E-value=0.19 Score=46.58 Aligned_cols=24 Identities=21% Similarity=0.324 Sum_probs=21.0
Q ss_pred eEEEEEEccCCChHHHHHHHHhhh
Q 002308 177 LHIISIVGMGGIGKTTLAQLACNH 200 (938)
Q Consensus 177 ~~vv~i~G~~GiGKTtLa~~v~~~ 200 (938)
...|+|+|.+|+|||||.+.+...
T Consensus 3 ~~~v~lvG~~gvGKStL~~~l~~~ 26 (165)
T 2wji_A 3 SYEIALIGNPNVGKSTIFNALTGE 26 (165)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHCC
T ss_pred ccEEEEECCCCCCHHHHHHHHhCC
Confidence 357899999999999999998763
No 440
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=90.05 E-value=0.18 Score=51.60 Aligned_cols=23 Identities=26% Similarity=0.472 Sum_probs=21.0
Q ss_pred eEEEEEEccCCChHHHHHHHHhh
Q 002308 177 LHIISIVGMGGIGKTTLAQLACN 199 (938)
Q Consensus 177 ~~vv~i~G~~GiGKTtLa~~v~~ 199 (938)
..+|+|.|+.|+||||||..++.
T Consensus 3 ~~~i~i~GptgsGKt~la~~La~ 25 (322)
T 3exa_A 3 EKLVAIVGPTAVGKTKTSVMLAK 25 (322)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred CcEEEEECCCcCCHHHHHHHHHH
Confidence 36899999999999999999887
No 441
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=90.05 E-value=0.16 Score=49.03 Aligned_cols=22 Identities=32% Similarity=0.437 Sum_probs=19.5
Q ss_pred EEEEEccCCChHHHHHHHHhhh
Q 002308 179 IISIVGMGGIGKTTLAQLACNH 200 (938)
Q Consensus 179 vv~i~G~~GiGKTtLa~~v~~~ 200 (938)
+|.|.|++|+||+|.|+.++..
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~ 23 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKE 23 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5789999999999999988773
No 442
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=90.02 E-value=0.15 Score=50.20 Aligned_cols=23 Identities=35% Similarity=0.465 Sum_probs=20.9
Q ss_pred eEEEEEEccCCChHHHHHHHHhh
Q 002308 177 LHIISIVGMGGIGKTTLAQLACN 199 (938)
Q Consensus 177 ~~vv~i~G~~GiGKTtLa~~v~~ 199 (938)
..+++|+|+.|+|||||++.++.
T Consensus 30 Ge~~~iiG~nGsGKSTLl~~l~G 52 (224)
T 2pcj_A 30 GEFVSIIGASGSGKSTLLYILGL 52 (224)
T ss_dssp TCEEEEEECTTSCHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhc
Confidence 35899999999999999999876
No 443
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=90.00 E-value=0.18 Score=50.99 Aligned_cols=27 Identities=33% Similarity=0.321 Sum_probs=23.4
Q ss_pred CCCeEEEEEEccCCChHHHHHHHHhhh
Q 002308 174 QKGLHIISIVGMGGIGKTTLAQLACNH 200 (938)
Q Consensus 174 ~~~~~vv~i~G~~GiGKTtLa~~v~~~ 200 (938)
.....++.+.|.||+||||++..++..
T Consensus 11 ~~~~~i~~~~GkgGvGKTTl~~~La~~ 37 (262)
T 1yrb_A 11 GMASMIVVFVGTAGSGKTTLTGEFGRY 37 (262)
T ss_dssp TCCCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CcceEEEEEeCCCCCCHHHHHHHHHHH
Confidence 345688999999999999999999874
No 444
>3mfy_A V-type ATP synthase alpha chain; A-type ATP synthase, P loop, phenylalanine mutant, hydrolase; 2.35A {Pyrococcus horikoshii} PDB: 3i4l_A* 3i72_A 3i73_A* 3p20_A 3ikj_A 3qg1_A 3nd8_A 3nd9_A 1vdz_A 3qia_A 3qjy_A 3m4y_A 3se0_A 3sdz_A
Probab=89.87 E-value=0.75 Score=50.56 Aligned_cols=59 Identities=12% Similarity=0.173 Sum_probs=40.3
Q ss_pred HHHHHHhccCcccCCCeEEEEEEccCCChHHHHHHHHhhhhhhhcccCeEEEEEeCCCCC-HHHHHHHH
Q 002308 161 ALLSMLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNHVEVKREFDKTLWVCVSETFD-EFRIAKAM 228 (938)
Q Consensus 161 ~l~~~l~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~-~~~~~~~i 228 (938)
++++.|..-. ....++|.|..|+|||+|++++++. .+-+.++++-+++..+ +.++++++
T Consensus 216 rvID~l~Pig-----kGqr~~I~g~~g~GKT~L~~~ia~~----~~~~~~V~~~iGER~~Ev~e~~~~~ 275 (588)
T 3mfy_A 216 RVIDTFFPQA-----KGGTAAIPGPAGSGKTVTQHQLAKW----SDAQVVIYIGCGERGNEMTDVLEEF 275 (588)
T ss_dssp HHHHHHSCEE-----TTCEEEECSCCSHHHHHHHHHHHHH----SSCSEEEEEECCSSSSHHHHHHHHT
T ss_pred chhhccCCcc-----cCCeEEeecCCCCCHHHHHHHHHhc----cCCCEEEEEEecccHHHHHHHHHHH
Confidence 3566665432 3457899999999999999998763 2235778888876554 34455544
No 445
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=89.86 E-value=0.16 Score=47.54 Aligned_cols=25 Identities=24% Similarity=0.333 Sum_probs=22.1
Q ss_pred CeEEEEEEccCCChHHHHHHHHhhh
Q 002308 176 GLHIISIVGMGGIGKTTLAQLACNH 200 (938)
Q Consensus 176 ~~~vv~i~G~~GiGKTtLa~~v~~~ 200 (938)
...+++|.|..|+|||||+..+...
T Consensus 5 ~~~~i~i~G~sGsGKTTl~~~l~~~ 29 (174)
T 1np6_A 5 MIPLLAFAAWSGTGKTTLLKKLIPA 29 (174)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHH
T ss_pred cceEEEEEeCCCCCHHHHHHHHHHh
Confidence 3568999999999999999999874
No 446
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=89.78 E-value=0.35 Score=47.67 Aligned_cols=25 Identities=28% Similarity=0.301 Sum_probs=22.4
Q ss_pred CeEEEEEEccCCChHHHHHHHHhhh
Q 002308 176 GLHIISIVGMGGIGKTTLAQLACNH 200 (938)
Q Consensus 176 ~~~vv~i~G~~GiGKTtLa~~v~~~ 200 (938)
....|+|.|++|+||||+++.+...
T Consensus 25 ~g~~i~i~G~~GsGKsT~~~~l~~~ 49 (229)
T 4eaq_A 25 MSAFITFEGPEGSGKTTVINEVYHR 49 (229)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHH
Confidence 4578999999999999999999884
No 447
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=89.71 E-value=0.3 Score=49.96 Aligned_cols=24 Identities=29% Similarity=0.358 Sum_probs=21.4
Q ss_pred eEEEEEEccCCChHHHHHHHHhhh
Q 002308 177 LHIISIVGMGGIGKTTLAQLACNH 200 (938)
Q Consensus 177 ~~vv~i~G~~GiGKTtLa~~v~~~ 200 (938)
..++.|+|++|+|||||+..++..
T Consensus 30 G~i~~i~G~~GsGKTtl~~~l~~~ 53 (279)
T 1nlf_A 30 GTVGALVSPGGAGKSMLALQLAAQ 53 (279)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHH
Confidence 458999999999999999998874
No 448
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=89.68 E-value=0.3 Score=51.61 Aligned_cols=25 Identities=36% Similarity=0.389 Sum_probs=22.8
Q ss_pred CeEEEEEEccCCChHHHHHHHHhhh
Q 002308 176 GLHIISIVGMGGIGKTTLAQLACNH 200 (938)
Q Consensus 176 ~~~vv~i~G~~GiGKTtLa~~v~~~ 200 (938)
...+++|+|+.|+||||+++.++..
T Consensus 156 ~g~vi~lvG~nGsGKTTll~~Lag~ 180 (359)
T 2og2_A 156 KPAVIMIVGVNGGGKTTSLGKLAHR 180 (359)
T ss_dssp SSEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCChHHHHHHHHHhh
Confidence 4679999999999999999999884
No 449
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=89.67 E-value=0.19 Score=50.17 Aligned_cols=25 Identities=32% Similarity=0.356 Sum_probs=22.0
Q ss_pred CeEEEEEEccCCChHHHHHHHHhhh
Q 002308 176 GLHIISIVGMGGIGKTTLAQLACNH 200 (938)
Q Consensus 176 ~~~vv~i~G~~GiGKTtLa~~v~~~ 200 (938)
...+++|+|+.|+|||||++.++.-
T Consensus 27 ~Ge~~~i~G~nGsGKSTLl~~l~Gl 51 (243)
T 1mv5_A 27 PNSIIAFAGPSGGGKSTIFSLLERF 51 (243)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHTTS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 4568999999999999999998763
No 450
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=89.65 E-value=0.21 Score=50.92 Aligned_cols=24 Identities=29% Similarity=0.176 Sum_probs=21.7
Q ss_pred CeEEEEEEccCCChHHHHHHHHhh
Q 002308 176 GLHIISIVGMGGIGKTTLAQLACN 199 (938)
Q Consensus 176 ~~~vv~i~G~~GiGKTtLa~~v~~ 199 (938)
...+|+|.|+.|+||||||..++.
T Consensus 9 ~~~~i~i~GptgsGKt~la~~La~ 32 (316)
T 3foz_A 9 LPKAIFLMGPTASGKTALAIELRK 32 (316)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCcEEEEECCCccCHHHHHHHHHH
Confidence 457899999999999999999887
No 451
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=89.59 E-value=0.16 Score=48.13 Aligned_cols=22 Identities=45% Similarity=0.484 Sum_probs=19.8
Q ss_pred EEEEEccCCChHHHHHHHHhhh
Q 002308 179 IISIVGMGGIGKTTLAQLACNH 200 (938)
Q Consensus 179 vv~i~G~~GiGKTtLa~~v~~~ 200 (938)
.|+|+|.+|+|||||++.+...
T Consensus 4 kv~ivG~~gvGKStLl~~l~~~ 25 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMKT 25 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4799999999999999998873
No 452
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=89.57 E-value=0.18 Score=48.25 Aligned_cols=24 Identities=25% Similarity=0.484 Sum_probs=21.3
Q ss_pred eEEEEEEccCCChHHHHHHHHhhh
Q 002308 177 LHIISIVGMGGIGKTTLAQLACNH 200 (938)
Q Consensus 177 ~~vv~i~G~~GiGKTtLa~~v~~~ 200 (938)
...|+|+|..|+|||||++.+...
T Consensus 29 ~~kv~lvG~~g~GKSTLl~~l~~~ 52 (191)
T 1oix_A 29 LFKVVLIGDSGVGKSNLLSRFTRN 52 (191)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHS
T ss_pred ceEEEEECcCCCCHHHHHHHHhcC
Confidence 467899999999999999998774
No 453
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=89.57 E-value=0.13 Score=49.80 Aligned_cols=23 Identities=35% Similarity=0.356 Sum_probs=20.8
Q ss_pred EEEEEEccCCChHHHHHHHHhhh
Q 002308 178 HIISIVGMGGIGKTTLAQLACNH 200 (938)
Q Consensus 178 ~vv~i~G~~GiGKTtLa~~v~~~ 200 (938)
.+++|.|+.|+|||||++.++.-
T Consensus 23 e~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 23 TIVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp SEEEEECCTTSSTTHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 47999999999999999998874
No 454
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=89.56 E-value=0.18 Score=50.10 Aligned_cols=24 Identities=25% Similarity=0.188 Sum_probs=21.1
Q ss_pred eEEEEEEccCCChHHHHHHHHhhh
Q 002308 177 LHIISIVGMGGIGKTTLAQLACNH 200 (938)
Q Consensus 177 ~~vv~i~G~~GiGKTtLa~~v~~~ 200 (938)
...|.|.|++|+||||+|+.++..
T Consensus 16 ~~~I~l~G~~GsGKsT~a~~La~~ 39 (233)
T 1ak2_A 16 GVRAVLLGPPGAGKGTQAPKLAKN 39 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 357899999999999999999873
No 455
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=89.49 E-value=0.18 Score=51.27 Aligned_cols=23 Identities=35% Similarity=0.437 Sum_probs=20.8
Q ss_pred eEEEEEEccCCChHHHHHHHHhh
Q 002308 177 LHIISIVGMGGIGKTTLAQLACN 199 (938)
Q Consensus 177 ~~vv~i~G~~GiGKTtLa~~v~~ 199 (938)
..+++|+|+.|+|||||++.++.
T Consensus 34 Ge~~~iiGpnGsGKSTLl~~l~G 56 (275)
T 3gfo_A 34 GEVTAILGGNGVGKSTLFQNFNG 56 (275)
T ss_dssp TSEEEEECCTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHHc
Confidence 35899999999999999999876
No 456
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=89.47 E-value=0.17 Score=51.20 Aligned_cols=24 Identities=33% Similarity=0.448 Sum_probs=21.5
Q ss_pred CeEEEEEEccCCChHHHHHHHHhh
Q 002308 176 GLHIISIVGMGGIGKTTLAQLACN 199 (938)
Q Consensus 176 ~~~vv~i~G~~GiGKTtLa~~v~~ 199 (938)
...+++|+|+.|+|||||++.++.
T Consensus 31 ~Ge~~~liG~nGsGKSTLlk~l~G 54 (262)
T 1b0u_A 31 AGDVISIIGSSGSGKSTFLRCINF 54 (262)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhc
Confidence 346899999999999999999886
No 457
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=89.42 E-value=0.66 Score=45.20 Aligned_cols=27 Identities=33% Similarity=0.513 Sum_probs=23.5
Q ss_pred CCeEEEEEEccCCChHHHHHHHHhhhh
Q 002308 175 KGLHIISIVGMGGIGKTTLAQLACNHV 201 (938)
Q Consensus 175 ~~~~vv~i~G~~GiGKTtLa~~v~~~~ 201 (938)
.....|.|.|..|+||||+++.+....
T Consensus 19 ~~~~~i~~~G~~g~GKst~~~~l~~~l 45 (223)
T 3ld9_A 19 PGSMFITFEGIDGSGKTTQSHLLAEYL 45 (223)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 356789999999999999999998853
No 458
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=89.40 E-value=0.21 Score=49.40 Aligned_cols=25 Identities=28% Similarity=0.159 Sum_probs=22.4
Q ss_pred CCeEEEEEEccCCChHHHHHHHHhh
Q 002308 175 KGLHIISIVGMGGIGKTTLAQLACN 199 (938)
Q Consensus 175 ~~~~vv~i~G~~GiGKTtLa~~v~~ 199 (938)
....+|+|.|+.|+||||+++.+..
T Consensus 18 ~~g~~i~i~G~~GsGKSTl~~~L~~ 42 (230)
T 2vp4_A 18 TQPFTVLIEGNIGSGKTTYLNHFEK 42 (230)
T ss_dssp CCCEEEEEECSTTSCHHHHHHTTGG
T ss_pred CCceEEEEECCCCCCHHHHHHHHHh
Confidence 4567999999999999999998877
No 459
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=89.27 E-value=0.18 Score=50.93 Aligned_cols=24 Identities=21% Similarity=0.343 Sum_probs=21.5
Q ss_pred CeEEEEEEccCCChHHHHHHHHhh
Q 002308 176 GLHIISIVGMGGIGKTTLAQLACN 199 (938)
Q Consensus 176 ~~~vv~i~G~~GiGKTtLa~~v~~ 199 (938)
...+++|+|+.|+|||||++.++.
T Consensus 49 ~Gei~~liG~NGsGKSTLlk~l~G 72 (263)
T 2olj_A 49 EGEVVVVIGPSGSGKSTFLRCLNL 72 (263)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTT
T ss_pred CCCEEEEEcCCCCcHHHHHHHHHc
Confidence 346899999999999999999887
No 460
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=89.27 E-value=0.16 Score=49.37 Aligned_cols=24 Identities=33% Similarity=0.466 Sum_probs=21.1
Q ss_pred eEEEEEEccCCChHHHHHHHHhhh
Q 002308 177 LHIISIVGMGGIGKTTLAQLACNH 200 (938)
Q Consensus 177 ~~vv~i~G~~GiGKTtLa~~v~~~ 200 (938)
..+++|+|+.|+|||||++.++.-
T Consensus 35 Ge~~~iiG~NGsGKSTLlk~l~Gl 58 (214)
T 1sgw_A 35 GNVVNFHGPNGIGKTTLLKTISTY 58 (214)
T ss_dssp TCCEEEECCTTSSHHHHHHHHTTS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 358999999999999999998763
No 461
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=89.24 E-value=0.44 Score=45.73 Aligned_cols=110 Identities=12% Similarity=0.014 Sum_probs=52.3
Q ss_pred CeEEEEEEccCCChHHHHHHHHhhhhhhhcccCeEEEEEeCCCCCHHHHHHHHHHHhcCCCC--CCCcHHHHHHHHHHHh
Q 002308 176 GLHIISIVGMGGIGKTTLAQLACNHVEVKREFDKTLWVCVSETFDEFRIAKAMLEALTGSTS--NLNALQSLLISIDESI 253 (938)
Q Consensus 176 ~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~--~~~~~~~~~~~l~~~l 253 (938)
...+..++|..|.||||.+...+.+...+ .. .++.+..... .+.-...+...++.... ...... .+.+..
T Consensus 27 ~G~l~vitG~MgsGKTT~lL~~a~r~~~~-g~-kVli~k~~~d--~R~ge~~i~s~~g~~~~a~~~~~~~----~~~~~~ 98 (214)
T 2j9r_A 27 NGWIEVICGSMFSGKSEELIRRVRRTQFA-KQ-HAIVFKPCID--NRYSEEDVVSHNGLKVKAVPVSASK----DIFKHI 98 (214)
T ss_dssp SCEEEEEECSTTSCHHHHHHHHHHHHHHT-TC-CEEEEECC-------------------CCEEECSSGG----GGGGGC
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHHHHC-CC-EEEEEEeccC--CcchHHHHHhhcCCeeEEeecCCHH----HHHHHH
Confidence 35788999999999999998888753322 22 2333332211 11112234444332211 111111 122222
Q ss_pred cCceEEEEEecCCCCCccChhHHHHhhhCCCCCcEEEEEcCCh
Q 002308 254 AGKRFLLVLDDVWDGDYIKWEPFYRCLKKGLHGSKILITTRKE 296 (938)
Q Consensus 254 ~~~~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtr~~ 296 (938)
.++--+|++|.+.--+.... .+...+.+ .|-.||+|-++.
T Consensus 99 ~~~~dvViIDEaQF~~~~~V-~~l~~l~~--~~~~Vi~~Gl~~ 138 (214)
T 2j9r_A 99 TEEMDVIAIDEVQFFDGDIV-EVVQVLAN--RGYRVIVAGLDQ 138 (214)
T ss_dssp CSSCCEEEECCGGGSCTTHH-HHHHHHHH--TTCEEEEEECSB
T ss_pred hcCCCEEEEECcccCCHHHH-HHHHHHhh--CCCEEEEEeccc
Confidence 23334999999866443333 33333332 367899999864
No 462
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=89.23 E-value=0.19 Score=49.99 Aligned_cols=23 Identities=30% Similarity=0.505 Sum_probs=21.0
Q ss_pred eEEEEEEccCCChHHHHHHHHhh
Q 002308 177 LHIISIVGMGGIGKTTLAQLACN 199 (938)
Q Consensus 177 ~~vv~i~G~~GiGKTtLa~~v~~ 199 (938)
..+++|+|+.|+|||||.+.++.
T Consensus 32 Ge~~~l~G~nGsGKSTLl~~l~G 54 (240)
T 1ji0_A 32 GQIVTLIGANGAGKTTTLSAIAG 54 (240)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhC
Confidence 45899999999999999999887
No 463
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=89.21 E-value=0.2 Score=51.95 Aligned_cols=22 Identities=36% Similarity=0.431 Sum_probs=20.3
Q ss_pred EEEEEEccCCChHHHHHHHHhh
Q 002308 178 HIISIVGMGGIGKTTLAQLACN 199 (938)
Q Consensus 178 ~vv~i~G~~GiGKTtLa~~v~~ 199 (938)
.+|.|.|++|+||||+|+.+..
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~ 24 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIA 24 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999999876
No 464
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=89.16 E-value=0.21 Score=47.26 Aligned_cols=24 Identities=25% Similarity=0.223 Sum_probs=21.2
Q ss_pred eEEEEEEccCCChHHHHHHHHhhh
Q 002308 177 LHIISIVGMGGIGKTTLAQLACNH 200 (938)
Q Consensus 177 ~~vv~i~G~~GiGKTtLa~~v~~~ 200 (938)
.+.|.|.|+.|+||||||.++...
T Consensus 34 g~~ilI~GpsGsGKStLA~~La~~ 57 (205)
T 2qmh_A 34 GLGVLITGDSGVGKSETALELVQR 57 (205)
T ss_dssp TEEEEEECCCTTTTHHHHHHHHTT
T ss_pred CEEEEEECCCCCCHHHHHHHHHHh
Confidence 367899999999999999999873
No 465
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=89.12 E-value=0.19 Score=50.77 Aligned_cols=24 Identities=33% Similarity=0.576 Sum_probs=21.5
Q ss_pred CeEEEEEEccCCChHHHHHHHHhh
Q 002308 176 GLHIISIVGMGGIGKTTLAQLACN 199 (938)
Q Consensus 176 ~~~vv~i~G~~GiGKTtLa~~v~~ 199 (938)
...+++|+|+.|+|||||++.++.
T Consensus 36 ~Ge~~~liG~nGsGKSTLl~~l~G 59 (266)
T 4g1u_C 36 SGEMVAIIGPNGAGKSTLLRLLTG 59 (266)
T ss_dssp TTCEEEEECCTTSCHHHHHHHHTS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhc
Confidence 346899999999999999999887
No 466
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=89.11 E-value=0.2 Score=50.53 Aligned_cols=23 Identities=30% Similarity=0.457 Sum_probs=21.0
Q ss_pred eEEEEEEccCCChHHHHHHHHhh
Q 002308 177 LHIISIVGMGGIGKTTLAQLACN 199 (938)
Q Consensus 177 ~~vv~i~G~~GiGKTtLa~~v~~ 199 (938)
..+++|+|+.|+|||||.+.++.
T Consensus 33 Ge~~~liG~nGsGKSTLlk~l~G 55 (257)
T 1g6h_A 33 GDVTLIIGPNGSGKSTLINVITG 55 (257)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhC
Confidence 45899999999999999999876
No 467
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=89.08 E-value=0.67 Score=58.81 Aligned_cols=85 Identities=21% Similarity=0.177 Sum_probs=56.4
Q ss_pred CeEEEEEEccCCChHHHHHHHHhhhhhhhcccCeEEEEEeCCCCCHHHHHHHHHHHhcCCCC-----CCCcHHHHHHHHH
Q 002308 176 GLHIISIVGMGGIGKTTLAQLACNHVEVKREFDKTLWVCVSETFDEFRIAKAMLEALTGSTS-----NLNALQSLLISID 250 (938)
Q Consensus 176 ~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~-----~~~~~~~~~~~l~ 250 (938)
..+++.|+|.+|+||||||.+++.... ..=..++|++.....+.. .++.++.... ...+.++....+.
T Consensus 382 ~G~lilI~G~pGsGKTtLaLq~a~~~~--~~G~~vlyis~E~s~~~~-----~a~~lGvd~~~L~i~~~~~~e~~l~~l~ 454 (1706)
T 3cmw_A 382 MGRIVEIYGPESSGKTTLTLQVIAAAQ--REGKTCAFIDAEHALDPI-----YARKLGVDIDNLLCSQPDTGEQALEICD 454 (1706)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHHHHH--HTTCCEEEECTTSCCCHH-----HHHHTTCCGGGCEEECCSSHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHH--HhCCCeEEEEccCchHHH-----HHHHcCCCHHHeEEcCCCCHHHHHHHHH
Confidence 456899999999999999999988532 222468899888777653 2455543211 1234556555555
Q ss_pred HHhc-CceEEEEEecCCC
Q 002308 251 ESIA-GKRFLLVLDDVWD 267 (938)
Q Consensus 251 ~~l~-~~~~LlVlDdv~~ 267 (938)
...+ .+.-+||+|-+..
T Consensus 455 ~lv~~~~~~lVVIDSL~a 472 (1706)
T 3cmw_A 455 ALARSGAVDVIVVDSVAA 472 (1706)
T ss_dssp HHHHHTCCSEEEESCSTT
T ss_pred HHHHhcCCCEEEECCHHH
Confidence 4443 4556999999854
No 468
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=89.06 E-value=0.24 Score=45.52 Aligned_cols=23 Identities=30% Similarity=0.463 Sum_probs=20.4
Q ss_pred EEEEEEccCCChHHHHHHHHhhh
Q 002308 178 HIISIVGMGGIGKTTLAQLACNH 200 (938)
Q Consensus 178 ~vv~i~G~~GiGKTtLa~~v~~~ 200 (938)
..|+|.|.+|+|||||+..+...
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~ 24 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKK 24 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 46899999999999999998764
No 469
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=89.03 E-value=0.35 Score=48.28 Aligned_cols=38 Identities=18% Similarity=0.184 Sum_probs=27.7
Q ss_pred HHHHHHHHhccCcccCCCeEEEEEEccCCChHHHHHHHHhhh
Q 002308 159 RNALLSMLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNH 200 (938)
Q Consensus 159 ~~~l~~~l~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~v~~~ 200 (938)
...+..++.... +....+.++|++|+|||.+|.++++.
T Consensus 90 ~~~l~~~l~~~~----~~~n~~~l~GppgtGKt~~a~ala~~ 127 (267)
T 1u0j_A 90 ASVFLGWATKKF----GKRNTIWLFGPATTGKTNIAEAIAHT 127 (267)
T ss_dssp HHHHHHHHTTCS----TTCCEEEEECSTTSSHHHHHHHHHHH
T ss_pred HHHHHHHHhCCC----CCCcEEEEECCCCCCHHHHHHHHHhh
Confidence 344666665321 23456999999999999999999873
No 470
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=89.02 E-value=0.2 Score=54.54 Aligned_cols=25 Identities=28% Similarity=0.387 Sum_probs=22.3
Q ss_pred CeEEEEEEccCCChHHHHHHHHhhh
Q 002308 176 GLHIISIVGMGGIGKTTLAQLACNH 200 (938)
Q Consensus 176 ~~~vv~i~G~~GiGKTtLa~~v~~~ 200 (938)
...+|.|+|++|+||||+|+.++..
T Consensus 257 ~~~lIil~G~pGSGKSTla~~L~~~ 281 (416)
T 3zvl_A 257 NPEVVVAVGFPGAGKSTFIQEHLVS 281 (416)
T ss_dssp SCCEEEEESCTTSSHHHHHHHHTGG
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHh
Confidence 5679999999999999999998873
No 471
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=88.95 E-value=0.21 Score=50.07 Aligned_cols=23 Identities=26% Similarity=0.509 Sum_probs=21.1
Q ss_pred eEEEEEEccCCChHHHHHHHHhh
Q 002308 177 LHIISIVGMGGIGKTTLAQLACN 199 (938)
Q Consensus 177 ~~vv~i~G~~GiGKTtLa~~v~~ 199 (938)
..+++|.|+.|+|||||++.++.
T Consensus 29 Ge~~~l~G~nGsGKSTLlk~l~G 51 (250)
T 2d2e_A 29 GEVHALMGPNGAGKSTLGKILAG 51 (250)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHhC
Confidence 35899999999999999999887
No 472
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=88.94 E-value=0.21 Score=49.96 Aligned_cols=23 Identities=43% Similarity=0.609 Sum_probs=21.0
Q ss_pred eEEEEEEccCCChHHHHHHHHhh
Q 002308 177 LHIISIVGMGGIGKTTLAQLACN 199 (938)
Q Consensus 177 ~~vv~i~G~~GiGKTtLa~~v~~ 199 (938)
..+++|+|+.|+|||||++.++.
T Consensus 35 Ge~~~i~G~nGsGKSTLl~~l~G 57 (247)
T 2ff7_A 35 GEVIGIVGRSGSGKSTLTKLIQR 57 (247)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhc
Confidence 35899999999999999999877
No 473
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=88.93 E-value=0.19 Score=50.43 Aligned_cols=24 Identities=29% Similarity=0.463 Sum_probs=21.4
Q ss_pred CeEEEEEEccCCChHHHHHHHHhh
Q 002308 176 GLHIISIVGMGGIGKTTLAQLACN 199 (938)
Q Consensus 176 ~~~vv~i~G~~GiGKTtLa~~v~~ 199 (938)
...+++|.|+.|+|||||.+.++.
T Consensus 40 ~Gei~~l~G~NGsGKSTLlk~l~G 63 (256)
T 1vpl_A 40 EGEIFGLIGPNGAGKTTTLRIIST 63 (256)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTT
T ss_pred CCcEEEEECCCCCCHHHHHHHHhc
Confidence 345899999999999999999876
No 474
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=88.91 E-value=0.19 Score=51.69 Aligned_cols=25 Identities=16% Similarity=0.267 Sum_probs=22.1
Q ss_pred CeEEEEEEccCCChHHHHHHHHhhh
Q 002308 176 GLHIISIVGMGGIGKTTLAQLACNH 200 (938)
Q Consensus 176 ~~~vv~i~G~~GiGKTtLa~~v~~~ 200 (938)
...+++|+|+.|.|||||++.+..-
T Consensus 125 ~Ge~vaIvGpsGsGKSTLl~lL~gl 149 (305)
T 2v9p_A 125 KKNCLAFIGPPNTGKSMLCNSLIHF 149 (305)
T ss_dssp TCSEEEEECSSSSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCcHHHHHHHHhhh
Confidence 4568999999999999999998873
No 475
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=88.90 E-value=0.22 Score=47.92 Aligned_cols=24 Identities=25% Similarity=0.484 Sum_probs=21.2
Q ss_pred eEEEEEEccCCChHHHHHHHHhhh
Q 002308 177 LHIISIVGMGGIGKTTLAQLACNH 200 (938)
Q Consensus 177 ~~vv~i~G~~GiGKTtLa~~v~~~ 200 (938)
...|+|+|..|+|||||.+.+...
T Consensus 5 ~~kv~lvG~~g~GKSTLl~~l~~~ 28 (199)
T 2f9l_A 5 LFKVVLIGDSGVGKSNLLSRFTRN 28 (199)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECcCCCCHHHHHHHHhcC
Confidence 457899999999999999998874
No 476
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=88.88 E-value=0.26 Score=46.70 Aligned_cols=25 Identities=20% Similarity=0.296 Sum_probs=21.9
Q ss_pred CeEEEEEEccCCChHHHHHHHHhhh
Q 002308 176 GLHIISIVGMGGIGKTTLAQLACNH 200 (938)
Q Consensus 176 ~~~vv~i~G~~GiGKTtLa~~v~~~ 200 (938)
....|+|+|.+|+|||||...+...
T Consensus 6 ~~~~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 6 KSYEIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4467999999999999999999873
No 477
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=88.77 E-value=0.2 Score=50.53 Aligned_cols=25 Identities=32% Similarity=0.445 Sum_probs=21.8
Q ss_pred CeEEEEEEccCCChHHHHHHHHhhh
Q 002308 176 GLHIISIVGMGGIGKTTLAQLACNH 200 (938)
Q Consensus 176 ~~~vv~i~G~~GiGKTtLa~~v~~~ 200 (938)
...+++|+|+.|+|||||++.++.-
T Consensus 45 ~Ge~~~i~G~nGsGKSTLl~~l~Gl 69 (260)
T 2ghi_A 45 SGTTCALVGHTGSGKSTIAKLLYRF 69 (260)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcc
Confidence 3458999999999999999998873
No 478
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=88.76 E-value=0.22 Score=50.47 Aligned_cols=24 Identities=29% Similarity=0.397 Sum_probs=21.5
Q ss_pred CeEEEEEEccCCChHHHHHHHHhh
Q 002308 176 GLHIISIVGMGGIGKTTLAQLACN 199 (938)
Q Consensus 176 ~~~vv~i~G~~GiGKTtLa~~v~~ 199 (938)
...+++|+|+.|+|||||++.++.
T Consensus 45 ~Ge~~~l~G~NGsGKSTLlk~l~G 68 (267)
T 2zu0_C 45 PGEVHAIMGPNGSGKSTLSATLAG 68 (267)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhC
Confidence 345899999999999999999887
No 479
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=88.70 E-value=0.11 Score=53.46 Aligned_cols=24 Identities=29% Similarity=0.387 Sum_probs=18.5
Q ss_pred CeEEEEEEccCCChHHHHHHHHhh
Q 002308 176 GLHIISIVGMGGIGKTTLAQLACN 199 (938)
Q Consensus 176 ~~~vv~i~G~~GiGKTtLa~~v~~ 199 (938)
...+|+|.|..|+||||+|+.+..
T Consensus 4 ~~~iIgItG~sGSGKSTva~~L~~ 27 (290)
T 1a7j_A 4 KHPIISVTGSSGAGTSTVKHTFDQ 27 (290)
T ss_dssp TSCEEEEESCC---CCTHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHH
Confidence 346899999999999999999877
No 480
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=88.69 E-value=0.21 Score=53.17 Aligned_cols=24 Identities=29% Similarity=0.115 Sum_probs=21.8
Q ss_pred CeEEEEEEccCCChHHHHHHHHhh
Q 002308 176 GLHIISIVGMGGIGKTTLAQLACN 199 (938)
Q Consensus 176 ~~~vv~i~G~~GiGKTtLa~~v~~ 199 (938)
...+++|+|++|+|||||++.++.
T Consensus 168 ~~~~i~l~G~~GsGKSTl~~~l~~ 191 (377)
T 1svm_A 168 KKRYWLFKGPIDSGKTTLAAALLE 191 (377)
T ss_dssp TCCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHh
Confidence 456899999999999999999987
No 481
>3vr4_A V-type sodium ATPase catalytic subunit A; V-ATPase, rotary motor, P-loop, hydrolas ATPase, ATP binding; HET: MSE B3P; 2.17A {Enterococcus hirae} PDB: 3vr3_A* 3vr2_A* 3vr5_A 3vr6_A*
Probab=88.68 E-value=0.97 Score=49.94 Aligned_cols=58 Identities=14% Similarity=0.167 Sum_probs=38.9
Q ss_pred HHHHHHhccCcccCCCeEEEEEEccCCChHHHHHHHHhhhhhhhcccCeEEEEEeCCCC-CHHHHHHH
Q 002308 161 ALLSMLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNHVEVKREFDKTLWVCVSETF-DEFRIAKA 227 (938)
Q Consensus 161 ~l~~~l~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~ 227 (938)
++++.|..-. ....++|.|..|+|||+|+.++++.. +-+.++++-+++.. .+.+++++
T Consensus 221 rvID~l~Pig-----rGqr~~Ifgg~g~GKT~L~~~ia~~~----~~~v~V~~~iGER~~Ev~e~~~~ 279 (600)
T 3vr4_A 221 RVIDTFFPVT-----KGGAAAVPGPFGAGKTVVQHQIAKWS----DVDLVVYVGCGERGNEMTDVVNE 279 (600)
T ss_dssp HHHHHHSCCB-----TTCEEEEECCTTSCHHHHHHHHHHHS----SCSEEEEEEEEECHHHHHHHHHH
T ss_pred hhhhccCCcc-----CCCEEeeecCCCccHHHHHHHHHhcc----CCCEEEEEEecccHHHHHHHHHH
Confidence 3566665432 34678999999999999999988742 23567777777642 33344433
No 482
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=88.67 E-value=0.22 Score=49.74 Aligned_cols=23 Identities=35% Similarity=0.488 Sum_probs=21.0
Q ss_pred eEEEEEEccCCChHHHHHHHHhh
Q 002308 177 LHIISIVGMGGIGKTTLAQLACN 199 (938)
Q Consensus 177 ~~vv~i~G~~GiGKTtLa~~v~~ 199 (938)
..+++|+|+.|+|||||.+.++.
T Consensus 26 Ge~~~liG~NGsGKSTLlk~l~G 48 (249)
T 2qi9_C 26 GEILHLVGPNGAGKSTLLARMAG 48 (249)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCcHHHHHHHHhC
Confidence 35899999999999999999887
No 483
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=88.66 E-value=0.2 Score=50.79 Aligned_cols=25 Identities=36% Similarity=0.453 Sum_probs=21.8
Q ss_pred CeEEEEEEccCCChHHHHHHHHhhh
Q 002308 176 GLHIISIVGMGGIGKTTLAQLACNH 200 (938)
Q Consensus 176 ~~~vv~i~G~~GiGKTtLa~~v~~~ 200 (938)
...+++|+|+.|+|||||++.++.-
T Consensus 44 ~Ge~~~i~G~nGsGKSTLlk~l~Gl 68 (271)
T 2ixe_A 44 PGKVTALVGPNGSGKSTVAALLQNL 68 (271)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 3468999999999999999998763
No 484
>3oaa_A ATP synthase subunit alpha; rossmann fold, hydrolase, hydrolase-transport PROT complex; HET: ANP ADP; 3.26A {Escherichia coli DH1} PDB: 2a7u_A
Probab=88.62 E-value=0.98 Score=49.11 Aligned_cols=86 Identities=21% Similarity=0.237 Sum_probs=48.9
Q ss_pred eEEEEEEccCCChHHHHH-HHHhhhhhhhcccC-eEEEEEeCCCC-CHHHHHHHHHHHhcCC-------CCCCCcHHHH-
Q 002308 177 LHIISIVGMGGIGKTTLA-QLACNHVEVKREFD-KTLWVCVSETF-DEFRIAKAMLEALTGS-------TSNLNALQSL- 245 (938)
Q Consensus 177 ~~vv~i~G~~GiGKTtLa-~~v~~~~~~~~~f~-~~~wv~~~~~~-~~~~~~~~i~~~l~~~-------~~~~~~~~~~- 245 (938)
...++|.|..|+|||+|| ..+.+. + +-+ .++++-+++.. .+.++.+++.+.=... ..+.......
T Consensus 162 GQR~~Ifg~~g~GKT~l~l~~I~n~---~-~~dv~~V~~~IGeR~~ev~e~~~~l~~~g~m~~tvvV~atad~p~~~r~~ 237 (513)
T 3oaa_A 162 GQRELIIGDRQTGKTALAIDAIINQ---R-DSGIKCIYVAIGQKASTISNVVRKLEEHGALANTIVVVATASESAALQYL 237 (513)
T ss_dssp TCBCEEEESSSSSHHHHHHHHHHTT---S-SSSCEEEEEEESCCHHHHHHHHHHHHHHSCSTTEEEEEECTTSCHHHHHH
T ss_pred CCEEEeecCCCCCcchHHHHHHHhh---c-cCCceEEEEEecCChHHHHHHHHHHhhcCcccceEEEEECCCCChHHHHH
Confidence 356899999999999997 456552 2 223 35777777654 3445555554431111 1111111111
Q ss_pred ----HHHHHHHh--cCceEEEEEecCC
Q 002308 246 ----LISIDESI--AGKRFLLVLDDVW 266 (938)
Q Consensus 246 ----~~~l~~~l--~~~~~LlVlDdv~ 266 (938)
.-.+.+++ +++.+||++||+.
T Consensus 238 a~~~a~tiAEyfrd~G~dVLli~Dslt 264 (513)
T 3oaa_A 238 APYAGCAMGEYFRDRGEDALIIYDDLS 264 (513)
T ss_dssp HHHHHHHHHHHHHHTTCEEEEEEETHH
T ss_pred HHHHHHHHHHHHHhcCCCEEEEecChH
Confidence 11223333 4899999999983
No 485
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=88.62 E-value=0.75 Score=45.56 Aligned_cols=101 Identities=21% Similarity=0.213 Sum_probs=53.9
Q ss_pred EEEEccCCChHHHHHHHHhhhhhhhcccCeEEEEEeCCCCCHHHHHHHHHHHhcC---C--------CCC-----CCcHH
Q 002308 180 ISIVGMGGIGKTTLAQLACNHVEVKREFDKTLWVCVSETFDEFRIAKAMLEALTG---S--------TSN-----LNALQ 243 (938)
Q Consensus 180 v~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~---~--------~~~-----~~~~~ 243 (938)
+.|+|+.|.|||.+|..++... . ..++++. .. ..+..++.+.+.. . ... ....+
T Consensus 111 ~ll~~~tG~GKT~~a~~~~~~~----~-~~~liv~-P~----~~L~~q~~~~~~~~~~~~v~~~~g~~~~~~~i~v~T~~ 180 (237)
T 2fz4_A 111 GCIVLPTGSGKTHVAMAAINEL----S-TPTLIVV-PT----LALAEQWKERLGIFGEEYVGEFSGRIKELKPLTVSTYD 180 (237)
T ss_dssp EEEEESSSTTHHHHHHHHHHHS----C-SCEEEEE-SS----HHHHHHHHHHHGGGCGGGEEEESSSCBCCCSEEEEEHH
T ss_pred EEEEeCCCCCHHHHHHHHHHHc----C-CCEEEEe-CC----HHHHHHHHHHHHhCCCCeEEEEeCCCCCcCCEEEEeHH
Confidence 7889999999999998887632 1 2344443 22 2344444444321 1 000 01122
Q ss_pred HHHHHHHHHhcCceEEEEEecCCCCCccChhHHHHhhhCCCCCcEEEEEcC
Q 002308 244 SLLISIDESIAGKRFLLVLDDVWDGDYIKWEPFYRCLKKGLHGSKILITTR 294 (938)
Q Consensus 244 ~~~~~l~~~l~~~~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtr 294 (938)
.+..... .+.++--+||+|++.......+..+...++ ...++.+|..
T Consensus 181 ~l~~~~~-~~~~~~~llIiDEaH~l~~~~~~~i~~~~~---~~~~l~LSAT 227 (237)
T 2fz4_A 181 SAYVNAE-KLGNRFMLLIFDEVHHLPAESYVQIAQMSI---APFRLGLTAT 227 (237)
T ss_dssp HHHHTHH-HHTTTCSEEEEECSSCCCTTTHHHHHHTCC---CSEEEEEEES
T ss_pred HHHhhHH-HhcccCCEEEEECCccCCChHHHHHHHhcc---CCEEEEEecC
Confidence 2222222 333445599999998765555666555543 3345555554
No 486
>1fx0_A ATP synthase alpha chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_A*
Probab=88.60 E-value=0.34 Score=52.84 Aligned_cols=86 Identities=17% Similarity=0.159 Sum_probs=47.2
Q ss_pred eEEEEEEccCCChHHHHH-HHHhhhhhhhcccC-eEEEEEeCCCC-CHHHHHHHHHHHhcC-------CCCCCCc-----
Q 002308 177 LHIISIVGMGGIGKTTLA-QLACNHVEVKREFD-KTLWVCVSETF-DEFRIAKAMLEALTG-------STSNLNA----- 241 (938)
Q Consensus 177 ~~vv~i~G~~GiGKTtLa-~~v~~~~~~~~~f~-~~~wv~~~~~~-~~~~~~~~i~~~l~~-------~~~~~~~----- 241 (938)
...++|.|.+|+|||+|| ..+++.. .-+ .++++-+++.. .+.++.+.+...=.. ...+...
T Consensus 163 GQR~~Ifg~~g~GKT~Lal~~I~~~~----~~dv~~V~~~iGeR~~Ev~~~~~~~~~~g~m~rtvvV~atad~p~~~r~~ 238 (507)
T 1fx0_A 163 GQRELIIGDRQTGKTAVATDTILNQQ----GQNVICVYVAIGQKASSVAQVVTNFQERGAMEYTIVVAETADSPATLQYL 238 (507)
T ss_dssp TCBCBEEESSSSSHHHHHHHHHHTCC----TTTCEEEEEEESCCHHHHHHHHHHTGGGTGGGSEEEEEECTTSCGGGTTH
T ss_pred CCEEEEecCCCCCccHHHHHHHHHhh----cCCcEEEEEEcCCCchHHHHHHHHHHhcCccccceEEEECCCCCHHHHHH
Confidence 456899999999999996 4666632 234 35677777643 233444444331100 0111111
Q ss_pred HHHHHHHHHHHh--cCceEEEEEecCC
Q 002308 242 LQSLLISIDESI--AGKRFLLVLDDVW 266 (938)
Q Consensus 242 ~~~~~~~l~~~l--~~~~~LlVlDdv~ 266 (938)
.....-.+.+++ +++.+|+++||+.
T Consensus 239 a~~~a~tiAEyfrd~G~dVLli~Dslt 265 (507)
T 1fx0_A 239 APYTGAALAEYFMYRERHTLIIYDDLS 265 (507)
T ss_dssp HHHHHHHHHHHHHHTTCEEEEEEECHH
T ss_pred HHHHHHHHHHHHHHcCCcEEEEEecHH
Confidence 111122233333 4899999999983
No 487
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=88.50 E-value=0.83 Score=44.27 Aligned_cols=24 Identities=21% Similarity=0.297 Sum_probs=21.8
Q ss_pred eEEEEEEccCCChHHHHHHHHhhh
Q 002308 177 LHIISIVGMGGIGKTTLAQLACNH 200 (938)
Q Consensus 177 ~~vv~i~G~~GiGKTtLa~~v~~~ 200 (938)
...|.|.|+.|+||||+++.+...
T Consensus 6 g~~i~~eG~~gsGKsT~~~~l~~~ 29 (213)
T 4edh_A 6 GLFVTLEGPEGAGKSTNRDYLAER 29 (213)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHH
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHH
Confidence 468999999999999999999884
No 488
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=88.44 E-value=0.15 Score=58.33 Aligned_cols=22 Identities=27% Similarity=0.363 Sum_probs=20.0
Q ss_pred EEEEEccCCChHHHHHHHHhhh
Q 002308 179 IISIVGMGGIGKTTLAQLACNH 200 (938)
Q Consensus 179 vv~i~G~~GiGKTtLa~~v~~~ 200 (938)
-|.++|++|+|||+||+.+++.
T Consensus 329 ~vLL~GppGtGKT~LAr~la~~ 350 (595)
T 3f9v_A 329 HILIIGDPGTAKSQMLQFISRV 350 (595)
T ss_dssp CEEEEESSCCTHHHHHHSSSTT
T ss_pred ceEEECCCchHHHHHHHHHHHh
Confidence 5899999999999999999874
No 489
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=88.41 E-value=0.63 Score=59.01 Aligned_cols=83 Identities=22% Similarity=0.190 Sum_probs=58.8
Q ss_pred CeEEEEEEccCCChHHHHHHHHhhhhhhhcccCeEEEEEeCCCCCHHHHHHHHHHHhcCCCC-----CCCcHHHHHHHHH
Q 002308 176 GLHIISIVGMGGIGKTTLAQLACNHVEVKREFDKTLWVCVSETFDEFRIAKAMLEALTGSTS-----NLNALQSLLISID 250 (938)
Q Consensus 176 ~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~-----~~~~~~~~~~~l~ 250 (938)
..++|-|+|+.|+||||||.++... .+..=...+|+.+.+..+..- ++.++.... .....++....+.
T Consensus 1430 rg~~iei~g~~~sGkttl~~~~~a~--~~~~g~~~~~i~~e~~~~~~~-----~~~~Gv~~~~l~~~~p~~~e~~l~~~~ 1502 (1706)
T 3cmw_A 1430 MGRIVEIYGPESSGKTTLTLQVIAA--AQREGKTCAFIDAEHALDPIY-----ARKLGVDIDNLLCSQPDTGEQALEICD 1502 (1706)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHHH--HHHTTCCEEEECTTSCCCHHH-----HHHTTCCGGGCEEECCSSHHHHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHH--HHhcCCeEEEEecCCCCCHHH-----HHHcCCCHHHeEEeCCCcHHHHHHHHH
Confidence 4589999999999999999999873 333336788998888777654 666664321 2234455666666
Q ss_pred HHhc-CceEEEEEecC
Q 002308 251 ESIA-GKRFLLVLDDV 265 (938)
Q Consensus 251 ~~l~-~~~~LlVlDdv 265 (938)
..++ +..-+||+|-|
T Consensus 1503 ~~~~s~~~~~vvvDsv 1518 (1706)
T 3cmw_A 1503 ALARSGAVDVIVVDSV 1518 (1706)
T ss_dssp HHHHHTCCSEEEESCS
T ss_pred HHHHcCCCCEEEEccH
Confidence 6665 45669999987
No 490
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=88.41 E-value=0.22 Score=50.48 Aligned_cols=24 Identities=29% Similarity=0.407 Sum_probs=21.3
Q ss_pred CeEEEEEEccCCChHHHHHHHHhh
Q 002308 176 GLHIISIVGMGGIGKTTLAQLACN 199 (938)
Q Consensus 176 ~~~vv~i~G~~GiGKTtLa~~v~~ 199 (938)
...+++|+|+.|+|||||++.++.
T Consensus 32 ~Ge~~~liG~nGsGKSTLl~~i~G 55 (266)
T 2yz2_A 32 EGECLLVAGNTGSGKSTLLQIVAG 55 (266)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTT
T ss_pred CCCEEEEECCCCCcHHHHHHHHhC
Confidence 345899999999999999999876
No 491
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=88.37 E-value=0.23 Score=49.77 Aligned_cols=24 Identities=33% Similarity=0.519 Sum_probs=21.3
Q ss_pred eEEEEEEccCCChHHHHHHHHhhh
Q 002308 177 LHIISIVGMGGIGKTTLAQLACNH 200 (938)
Q Consensus 177 ~~vv~i~G~~GiGKTtLa~~v~~~ 200 (938)
..+++|+|+.|+|||||.+.++.-
T Consensus 31 Ge~~~l~G~nGsGKSTLl~~l~Gl 54 (253)
T 2nq2_C 31 GDILAVLGQNGCGKSTLLDLLLGI 54 (253)
T ss_dssp TCEEEEECCSSSSHHHHHHHHTTS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 358999999999999999998873
No 492
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=88.31 E-value=0.31 Score=45.05 Aligned_cols=25 Identities=28% Similarity=0.505 Sum_probs=21.4
Q ss_pred CeEEEEEEccCCChHHHHHHHHhhh
Q 002308 176 GLHIISIVGMGGIGKTTLAQLACNH 200 (938)
Q Consensus 176 ~~~vv~i~G~~GiGKTtLa~~v~~~ 200 (938)
..-.|+|+|.+|+|||||+..+...
T Consensus 4 ~~~~i~v~G~~~~GKssl~~~l~~~ 28 (168)
T 1z2a_A 4 VAIKMVVVGNGAVGKSSMIQRYCKG 28 (168)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHC
T ss_pred eeEEEEEECcCCCCHHHHHHHHHcC
Confidence 3456899999999999999998764
No 493
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=88.27 E-value=0.24 Score=50.47 Aligned_cols=24 Identities=29% Similarity=0.339 Sum_probs=21.4
Q ss_pred CeEEEEEEccCCChHHHHHHHHhh
Q 002308 176 GLHIISIVGMGGIGKTTLAQLACN 199 (938)
Q Consensus 176 ~~~vv~i~G~~GiGKTtLa~~v~~ 199 (938)
...+++|+|+.|+|||||++.++.
T Consensus 46 ~Ge~~~liG~NGsGKSTLlk~l~G 69 (279)
T 2ihy_A 46 KGDKWILYGLNGAGKTTLLNILNA 69 (279)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTT
T ss_pred CCCEEEEECCCCCcHHHHHHHHhC
Confidence 345899999999999999999887
No 494
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=88.16 E-value=0.25 Score=49.08 Aligned_cols=25 Identities=28% Similarity=0.327 Sum_probs=22.1
Q ss_pred CCeEEEEEEccCCChHHHHHHHHhh
Q 002308 175 KGLHIISIVGMGGIGKTTLAQLACN 199 (938)
Q Consensus 175 ~~~~vv~i~G~~GiGKTtLa~~v~~ 199 (938)
....+|+|.|+.|+||||+++.+..
T Consensus 14 ~~~~~i~i~G~~gsGKst~~~~l~~ 38 (236)
T 1q3t_A 14 MKTIQIAIDGPASSGKSTVAKIIAK 38 (236)
T ss_dssp CCCCEEEEECSSCSSHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHH
Confidence 4556899999999999999998876
No 495
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=88.13 E-value=0.28 Score=45.82 Aligned_cols=23 Identities=22% Similarity=0.307 Sum_probs=20.5
Q ss_pred EEEEEEccCCChHHHHHHHHhhh
Q 002308 178 HIISIVGMGGIGKTTLAQLACNH 200 (938)
Q Consensus 178 ~vv~i~G~~GiGKTtLa~~v~~~ 200 (938)
..|+|+|.+|+|||||...+...
T Consensus 5 ~ki~ivG~~g~GKStLl~~l~~~ 27 (172)
T 2gj8_A 5 MKVVIAGRPNAGKSSLLNALAGR 27 (172)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTS
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 46899999999999999999864
No 496
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=88.13 E-value=0.43 Score=47.71 Aligned_cols=50 Identities=20% Similarity=0.200 Sum_probs=32.6
Q ss_pred CeEEEEEEccCCChHHHHHHHHhhhhhhhcccCeEEEEEeCCCCCHHHHHHHH
Q 002308 176 GLHIISIVGMGGIGKTTLAQLACNHVEVKREFDKTLWVCVSETFDEFRIAKAM 228 (938)
Q Consensus 176 ~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i 228 (938)
...++.|.|.+|+|||++|.+++... ....-..++|++... +...+.+.+
T Consensus 29 ~G~l~~i~G~pG~GKT~l~l~~~~~~-~~~~~~~v~~~s~E~--~~~~~~~~~ 78 (251)
T 2zts_A 29 EGTTVLLTGGTGTGKTTFAAQFIYKG-AEEYGEPGVFVTLEE--RARDLRREM 78 (251)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHHHH-HHHHCCCEEEEESSS--CHHHHHHHH
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHH-HHhcCCCceeecccC--CHHHHHHHH
Confidence 44689999999999999999876542 222224566665543 455554443
No 497
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=88.12 E-value=1.1 Score=51.39 Aligned_cols=23 Identities=35% Similarity=0.289 Sum_probs=20.3
Q ss_pred EEEEEEccCCChHHHHHHHHhhh
Q 002308 178 HIISIVGMGGIGKTTLAQLACNH 200 (938)
Q Consensus 178 ~vv~i~G~~GiGKTtLa~~v~~~ 200 (938)
+++.|.|.+|+||||++..+...
T Consensus 165 ~~~vi~G~pGTGKTt~l~~ll~~ 187 (608)
T 1w36_D 165 RISVISGGPGTGKTTTVAKLLAA 187 (608)
T ss_dssp SEEEEECCTTSTHHHHHHHHHHH
T ss_pred CCEEEEeCCCCCHHHHHHHHHHH
Confidence 58999999999999999887764
No 498
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=88.03 E-value=0.29 Score=48.86 Aligned_cols=24 Identities=29% Similarity=0.372 Sum_probs=21.3
Q ss_pred eEEEEEEccCCChHHHHHHHHhhh
Q 002308 177 LHIISIVGMGGIGKTTLAQLACNH 200 (938)
Q Consensus 177 ~~vv~i~G~~GiGKTtLa~~v~~~ 200 (938)
...|+|.|..|+||||+++.++..
T Consensus 2 ~~~i~~~G~~g~GKtt~~~~l~~~ 25 (241)
T 2ocp_A 2 PRRLSIEGNIAVGKSTFVKLLTKT 25 (241)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHH
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHH
Confidence 367999999999999999998873
No 499
>1cp2_A CP2, nitrogenase iron protein; oxidoreductase; 1.93A {Clostridium pasteurianum} SCOP: c.37.1.10
Probab=88.01 E-value=0.59 Score=47.40 Aligned_cols=37 Identities=27% Similarity=0.320 Sum_probs=26.7
Q ss_pred EEEEEEccCCChHHHHHHHHhhhhhhhcccCeEEEEEeC
Q 002308 178 HIISIVGMGGIGKTTLAQLACNHVEVKREFDKTLWVCVS 216 (938)
Q Consensus 178 ~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~ 216 (938)
++|+|.|.||+||||+|..++.... ..=..++.|+..
T Consensus 2 ~vI~vs~KGGvGKTT~a~nLA~~la--~~G~~VlliD~D 38 (269)
T 1cp2_A 2 RQVAIYGKGGIGKSTTTQNLTSGLH--AMGKTIMVVGCD 38 (269)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHHH--TTTCCEEEEEEC
T ss_pred cEEEEecCCCCcHHHHHHHHHHHHH--HCCCcEEEEcCC
Confidence 5788899999999999998887432 221246666654
No 500
>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus}
Probab=87.88 E-value=1.1 Score=48.44 Aligned_cols=26 Identities=23% Similarity=0.298 Sum_probs=23.1
Q ss_pred CCCeEEEEEEccCCChHHHHHHHHhh
Q 002308 174 QKGLHIISIVGMGGIGKTTLAQLACN 199 (938)
Q Consensus 174 ~~~~~vv~i~G~~GiGKTtLa~~v~~ 199 (938)
....++..|.|.+|.||||+..+.++
T Consensus 158 ~~~~~v~~I~G~aGsGKTt~I~~~~~ 183 (446)
T 3vkw_A 158 VSSAKVVLVDGVPGCGKTKEILSRVN 183 (446)
T ss_dssp CCCSEEEEEEECTTSCHHHHHHHHCC
T ss_pred cccccEEEEEcCCCCCHHHHHHHHhc
Confidence 34678999999999999999998876
Done!