BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 002309
(938 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3KG2|A Chain A, Ampa Subtype Ionotropic Glutamate Receptor In Complex With
Competitive Antagonist Zk 200775
pdb|3KG2|B Chain B, Ampa Subtype Ionotropic Glutamate Receptor In Complex With
Competitive Antagonist Zk 200775
pdb|3KG2|C Chain C, Ampa Subtype Ionotropic Glutamate Receptor In Complex With
Competitive Antagonist Zk 200775
pdb|3KG2|D Chain D, Ampa Subtype Ionotropic Glutamate Receptor In Complex With
Competitive Antagonist Zk 200775
Length = 823
Score = 119 bits (299), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 160/757 (21%), Positives = 301/757 (39%), Gaps = 121/757 (15%)
Query: 154 AVAEMVSYYGWNAVSVIFVDNEYGRNGVSALNDKLAERRCRISYKSGIPPESGVNTGYVM 213
A+ ++ YY W+ + ++ D++ G + + A+ D AE++ +++ +N G +
Sbjct: 111 ALLSLIEYYQWDKFAYLY-DSDRGLSTLQAVLDSAAEKKWQVT---------AINVGNIN 160
Query: 214 D---------LLVKVALMESRVIVLHVSPSLGFQVFSVAKYLGMMGNGYVWIATDWLAYM 264
+ L + L + R ++L + +G GY Y+
Sbjct: 161 NDKKDETYRSLFQDLELKKERRVILDCERDKVNDIVDQVITIGKHVKGY--------HYI 212
Query: 265 LDSASLPSETLESMQ--GVLVLRQHIPESDRK--KNFLSRWKNLT-----GGSLGMNSY- 314
+ + L +Q G V I + D F+ RW L G Y
Sbjct: 213 IANLGFTDGDLLKIQFGGAEVSGFQIVDYDDSLVSKFIERWSTLEEKEYPGAHTATIKYT 272
Query: 315 GLYAYDSVWLLAHAIESFFNQGGKISFSNDSRLKTMEGGNLHLGAMSIFDDGMLLLGNIL 374
YD+V ++ A + Q +IS ++ G+ + G+ + +
Sbjct: 273 SALTYDAVQVMTEAFRNLRKQRIEISRRGNA-------GDCLANPAVPWGQGVEIERALK 325
Query: 375 QSNLVGLTGPLKFNSDRSLIHAAYDIINVIGTGFRMIGYWSNYSGLSKEPPETLYAQPFN 434
Q + GL+G +KF+ + I+ +I+ + G R IGYWS + +T
Sbjct: 326 QVQVEGLSGNIKFDQNGKRINYTINIMELKTNGPRKIGYWSEVDKMVLTEDDT------- 378
Query: 435 RSSTIQHLHSVIWPGETLSKPRGWVFPNNGKLLKIGVPNRASYREFVSKVRGSDMFQGFC 494
S ++ V+ L P + N+ L G++ ++G+C
Sbjct: 379 --SGLEQKTVVV--TTILESPYVMMKANHAALA------------------GNERYEGYC 416
Query: 495 IDVFTAAVNLLPYAVPYQFVAFGDGHKNPS------YTQLVDSITTGVFDAVVGDITIVT 548
+D+ AA Y+ GDG + +V + G D + +TI
Sbjct: 417 VDL--AAEIAKHCGFKYKLTIVGDGKYGARDADTKIWNGMVGELVYGKADIAIAPLTITL 474
Query: 549 NRTKIVDFSQPYAASGLVVVVPF-RKLNTGAWAFLRPFSPLMWTVTACFFVVVGIVVWIL 607
R +++DFS+P+ + G+ +++ +K G ++FL P + +W ++ V +V++++
Sbjct: 475 VREEVIDFSKPFMSLGISIMIKKPQKSKPGVFSFLDPLAYEIWMCIVFAYIGVSVVLFLV 534
Query: 608 E-----HRINDEFRGPPKRQ---------VITILWFSLSTLFFAHIAIFVILAEENTVST 653
+EF + Q + LWFSL A A+ + S
Sbjct: 535 SRFSPYEWHTEEFEDGRETQSSESTNEFGIFNSLWFSLG-------AFMQQGADISPRSL 587
Query: 654 LGRXXXXXXXXXXXXXNSSYTASLTSILTVQQLYSPINGIESLRKSDDPIGY---QEGSF 710
GR SSYTA+L + LTV+++ SPI E L K + I Y GS
Sbjct: 588 SGRIVGGVWWFFTLIIISSYTANLAAFLTVERMVSPIESAEDLSKQTE-IAYGTLDSGST 646
Query: 711 AEYYLSQELNISKSRLVALRT--PEDYAKALKDG-----PGKGGVAAVVDERPYVELFLS 763
E++ ++ + +R+ P + + +G KG A +++ +
Sbjct: 647 KEFFRRSKIAVFDKMWTYMRSAEPSVFVRTTAEGVARVRKSKGKYAYLLESTMNEYIEQR 706
Query: 764 SQCSFRIVGQEFTKSGWGFAFPRDSPLAVDLSSAILELAENGDLQRIHDKWLM-KSSCSL 822
C VG G+G A P+ S L ++ A+L+L+E G L ++ +KW K C
Sbjct: 707 KPCDTMKVGGNLDSKGYGIATPKGSSLGTPVNLAVLKLSEQGLLDKLKNKWWYDKGECGA 766
Query: 823 EN--AELESDRLHLSSFWGLFLI----CGVACFIALV 853
++ ++ ++ L LS+ G+F I G+A +AL+
Sbjct: 767 KDSGSKEKTSALSLSNVAGVFYILVGGLGLAMLVALI 803
>pdb|3Q41|A Chain A, Crystal Structure Of The Glun1 N-Terminal Domain (Ntd)
pdb|3Q41|B Chain B, Crystal Structure Of The Glun1 N-Terminal Domain (Ntd)
pdb|3Q41|C Chain C, Crystal Structure Of The Glun1 N-Terminal Domain (Ntd)
Length = 384
Score = 73.9 bits (180), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 104/449 (23%), Positives = 170/449 (37%), Gaps = 99/449 (22%)
Query: 29 PAVVNVGALFTLDSTIGRVAKIAIEEAVKDVNSNSSILHGT---KLN---ITMQSSNCSG 82
P +VN+GA+ + R + EAV N HG+ +LN +T + +
Sbjct: 4 PKIVNIGAVLST-----RKHEQMFREAVNQANKR----HGSWKIQLNATSVTHKPNAIQM 54
Query: 83 FIGMVEALRFMETDIVAII-----GPQCSTVAHIVSYVSNELQVPLLSFGVTDPTLSSLQ 137
+ + E L + + + AI+ P VSY + ++P+L S
Sbjct: 55 ALSVCEDL--ISSQVYAILVSHPPTPNDHFTPTPVSYTAGFYRIPVLGLTTRMSIYSDKS 112
Query: 138 YPF-FVRTTQSDSYQMTAVAEMVSYYGWNAVSVIFVDNEYGRNGVSALNDKLAERRCRIS 196
F+RT S+Q + EM+ Y WN + ++ D+ GR L L ER +
Sbjct: 113 IHLSFLRTVPPYSHQSSVWFEMMRVYNWNHIILLVSDDHEGRAAQKRLETLLEERESKAE 172
Query: 197 YKSGIPPESGVNTGYVMDLLVKVALMESRVIVLHVSPSLGFQVFSVAKYLGMMGNGYVW- 255
P T V LL++ +E+RVI+L S V+ A L M G+GYVW
Sbjct: 173 KVLQFDP----GTKNVTALLMEARELEARVIILSASEDDAATVYRAAAMLNMTGSGYVWL 228
Query: 256 -----IATDWLAYMLDSASLPSETLESMQGVLVLRQHIPESDRKKNFLSRWKNLTGGSLG 310
I+ + L Y D G++ L+ L KN +
Sbjct: 229 VGEREISGNALRYAPD-------------GIIGLQ------------LINGKNESA---- 259
Query: 311 MNSYGLYAYDSVWLLAHAIESFFNQGGKISFSNDSRLKTMEGGNLHLGAMSIFDDGMLLL 370
+ D+V ++A A+ K + ++ R +G +I+ G L
Sbjct: 260 ------HISDAVGVVAQAVHELLE---KENITDPPRGC--------VGNTNIWKTGPLFK 302
Query: 371 GNILQSNLV-GLTGPLKFNSDRSLIHAAYDIINVIGTGFRMIGYWSNYSGLSKEPPETLY 429
++ S G+TG ++FN D A Y I+N+ +G
Sbjct: 303 RVLMSSKYADGVTGRVEFNEDGDRKFANYSIMNLQNRKLVQVGI---------------- 346
Query: 430 AQPFNRSSTIQHLHSVIWPGETLSKPRGW 458
+N + I + +IWPG KPRG+
Sbjct: 347 ---YNGTHVIPNDRKIIWPGGETEKPRGY 372
>pdb|2E4Z|A Chain A, Crystal Structure Of The Ligand-Binding Region Of The
Group Iii Metabotropic Glutamate Receptor
Length = 501
Score = 73.9 bits (180), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 90/363 (24%), Positives = 146/363 (40%), Gaps = 41/363 (11%)
Query: 97 IVAIIGPQCSTVAHIVSYVSNELQVPLLSFGVTDPTLSS-LQYPFFVRTTQSDSYQMTAV 155
+V +IG S+V+ +V+ + Q+P +S+ T P LS +Y FF R DS+Q A+
Sbjct: 118 VVGVIGASGSSVSIMVANILRLFQIPQISYASTAPELSDDRRYDFFSRVVPPDSFQAQAM 177
Query: 156 AEMVSYYGWNAVSVIFVDNEYGRNGVSALND--KLAERRCRISYKSGIPPESGVNTGYVM 213
++V GWN VS + + YG GV + K A C I+ IP E T
Sbjct: 178 VDIVKALGWNYVSTLASEGSYGEKGVESFTQISKEAGGLC-IAQSVRIPQERKDRT-IDF 235
Query: 214 DLLVKVAL--MESRVIVLHVSPSLGFQVFSVAKYLGMMGNGYVWIATDWLAYMLDSASLP 271
D ++K L SR +V+ + Q+ + AK +G+ ++W+ +D ++
Sbjct: 236 DRIIKQLLDTPNSRAVVIFANDEDIKQILAAAKRADQVGH-FLWVGSDSWGSKINPLHQH 294
Query: 272 SETLESMQGVLVLRQHIP-----------ESDRKKN-FLSRWKNLTGGSLGMNSYGLYAY 319
+ E + R + E++R+ F W+ L ++
Sbjct: 295 EDIAEGAITIQPKRATVEGFDAYFTSRTLENNRRNVWFAEYWEENFNCKLTISGSKKEDT 354
Query: 320 DSVWLLAHAI--ESFFNQGGKISFSNDSRLKTMEGGNLHLGAMSIFD-----------DG 366
D I +S + Q GK+ F D+ + M H+ D G
Sbjct: 355 DRKCTGQERIGKDSNYEQEGKVQFVIDA-VYAMAHALHHMNKDLCADYRGVCPEMEQAGG 413
Query: 367 MLLLGNILQSNLVGLTG-PLKFNSDRSLIHAAYDII-----NVIGTGFRMIGYWSNYSGL 420
LL I N G G P+ FN + YDI N G+R+IG W++ L
Sbjct: 414 KKLLKYIRHVNFNGSAGTPVMFNKNGDA-PGRYDIFQYQTTNTTNPGYRLIGQWTDELQL 472
Query: 421 SKE 423
+ E
Sbjct: 473 NIE 475
>pdb|3MQ4|A Chain A, Metabotropic Glutamate Receptor Mglur7 Complexed With
Ly3414 Antagonist
Length = 481
Score = 71.2 bits (173), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 88/362 (24%), Positives = 144/362 (39%), Gaps = 39/362 (10%)
Query: 97 IVAIIGPQCSTVAHIVSYVSNELQVPLLSFGVTDPTLSS-LQYPFFVRTTQSDSYQMTAV 155
+V +IG S+V+ +V+ + Q+P +S+ T P LS +Y FF R DS+Q A+
Sbjct: 118 VVGVIGASGSSVSIMVANILRLFQIPQISYASTAPELSDDRRYDFFSRVVPPDSFQAQAM 177
Query: 156 AEMVSYYGWNAVSVIFVDNEYGRNGVSALNDKLAER-RCRISYKSGIPPESGVNTGYVMD 214
++V GWN VS + + YG GV + E I+ IP E T D
Sbjct: 178 VDIVKALGWNYVSTLASEGSYGEKGVESFTQISKEAGGLSIAQSVRIPQERKDRT-IDFD 236
Query: 215 LLVKVAL--MESRVIVLHVSPSLGFQVFSVAKYLGMMGNGYVWIATDWLAYMLDSASLPS 272
++K L SR +V+ + Q+ + AK +G+ ++W+ +D ++
Sbjct: 237 RIIKQLLDTPNSRAVVIFANDEDIKQILAAAKRADQVGH-FLWVGSDSWGSKINPLHQHE 295
Query: 273 ETLESMQGVLVLRQHIP-----------ESDRKKN-FLSRWKNLTGGSLGMNSYGLYAYD 320
+ E + R + E++R+ F W+ L ++ D
Sbjct: 296 DIAEGAITIQPKRATVEGFDAYFTSRTLENNRRNVWFAEYWEENFNCKLTISGSKKEDTD 355
Query: 321 SVWLLAHAI--ESFFNQGGKISFSNDSRLKTMEGGNLHLGAMSIFD-----------DGM 367
I +S + Q GK+ F D+ + M H+ D G
Sbjct: 356 RKCTGQERIGKDSNYEQEGKVQFVIDA-VYAMAHALHHMNKDLCADYRGVCPEMEQAGGK 414
Query: 368 LLLGNILQSNLVGLTG-PLKFNSDRSLIHAAYDII-----NVIGTGFRMIGYWSNYSGLS 421
LL I N G G P+ FN + YDI N G+R+IG W++ L+
Sbjct: 415 KLLKYIRNVNFNGSAGTPVMFNKNGDA-PGRYDIFQYQTTNTSNPGYRLIGQWTDELQLN 473
Query: 422 KE 423
E
Sbjct: 474 IE 475
>pdb|4F11|A Chain A, Crystal Structure Of The Extracellular Domain Of Human
Gaba(B) Receptor Gbr2
pdb|4F12|A Chain A, Crystal Structure Of The Extracellular Domain Of Human
Gaba(B) Receptor Gbr2
Length = 433
Score = 70.5 bits (171), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 80/370 (21%), Positives = 149/370 (40%), Gaps = 40/370 (10%)
Query: 43 TIGRVAKIAIEEAVKDVNSNSSILHGTKLNITMQSSNC---SGFIGMVEALRFMETDIVA 99
+IGR A+E A++ + N S+L L++ + + C G +A+++ ++
Sbjct: 31 SIGRGVLPAVELAIEQIR-NESLLRPYFLDLRLYDTECDNAKGLKAFYDAIKYGPNHLM- 88
Query: 100 IIGPQCSTVAHIVSYVSNELQVPLLSFGVTDPTLS-SLQYPFFVRTTQSDSYQMTAVAEM 158
+ G C +V I++ + LSF T P L+ +YP+F RT SD+ A+ ++
Sbjct: 89 VFGGVCPSVTSIIAESLQGWNLVQLSFAATTPVLADKKKYPYFFRTVPSDNAVNPAILKL 148
Query: 159 VSYYGWNAVSVIFVDNEYGRNGVSALNDKLAERRCRISYKSGIPPESGVNTGYVMDLLVK 218
+ +Y W V + D + + L L IS + + + K
Sbjct: 149 LKHYQWKRVGTLTQDVQRFSEVRNDLTGVLYGEDIEISDTESFSNDPCTS-------VKK 201
Query: 219 VALMESRVIVLHVSPSLGFQVFSVAKYLGMMGNGYVWIATDWL---------AYMLDSAS 269
+ + R+I+ ++ +VF A M G+ Y WI W S
Sbjct: 202 LKGNDVRIILGQFDQNMAAKVFCCAYEENMYGSKYQWIIPGWYEPSWWEQVHTEANSSRC 261
Query: 270 LPSETLESMQGV-------LVLRQHIPESDRKKNFLSRWKNLTGGSLGMNSYGLYAYDSV 322
L L +M+G L +Q S + R N +G + + YAYD +
Sbjct: 262 LRKNLLAAMEGYIGVDFEPLSSKQIKTISGKTPQQYEREYNNKRSGVGPSKFHGYAYDGI 321
Query: 323 WLLAHAIESFFNQGGKISFSNDSRLKTMEGGNLHLGAMSIFDDGMLLLGNILQSNLVGLT 382
W++A ++ + SR + ++ N + G ++L + ++N G+T
Sbjct: 322 WVIAKTLQRAME-----TLHASSRHQRIQDFNYTDHTL-----GRIILNAMNETNFFGVT 371
Query: 383 GPLKF-NSDR 391
G + F N +R
Sbjct: 372 GQVVFRNGER 381
>pdb|3SM9|A Chain A, Crystal Structure Of Metabotropic Glutamate Receptor 3
Precursor In Presence Of Ly341495 Antagonist
Length = 479
Score = 64.7 bits (156), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 51/233 (21%), Positives = 99/233 (42%), Gaps = 34/233 (14%)
Query: 55 AVKDVNSNSSILHGTKLNITMQSSNCSGFIGMVEALRFMETD------------------ 96
A+ ++N + +L G KL + + + + ++L F+
Sbjct: 50 AIDEINKDDYLLPGVKLGVHILDTCSRDTYALEQSLEFVRASLTKVDEAEYMCPDGSYAI 109
Query: 97 -------IVAIIGPQCSTVAHIVSYVSNELQVPLLSFGVTDPTLSSL-QYPFFVRTTQSD 148
I +IG S+V+ V+ + Q+P +S+ T LS +Y +F RT D
Sbjct: 110 QENIPLLIAGVIGGSYSSVSIQVANLLRLFQIPQISYASTSAKLSDKSRYDYFARTVPPD 169
Query: 149 SYQMTAVAEMVSYYGWNAVSVIFVDNEYGRNGVSALNDKLAERRCRISYKSGIPPESGVN 208
YQ A+AE++ ++ W VS + + +YG G+ A + R I+ + S +
Sbjct: 170 FYQAKAMAEILRFFNWTYVSTVASEGDYGETGIEAFEQEARLRNISIATAEKV-GRSNIR 228
Query: 209 TGYVMDLLVKVALME--SRVIVLHVSPSLGFQVFSVAKYLGMMGNGYVWIATD 259
Y D +++ L + +RV+VL + ++ + A + W+A+D
Sbjct: 229 KSY--DSVIRELLQKPNARVVVLFMRSDDSRELIAAA---SRANASFTWVASD 276
>pdb|2E4U|A Chain A, Crystal Structure Of The Extracellular Region Of The Group
Ii Metabotropic Glutamate Receptor Complexed With
L-glutamate
pdb|2E4U|B Chain B, Crystal Structure Of The Extracellular Region Of The Group
Ii Metabotropic Glutamate Receptor Complexed With
L-glutamate
pdb|2E4V|A Chain A, Crystal Structure Of The Extracellular Region Of The Group
Ii Metabotropic Glutamate Receptor Complexed With Dcg-Iv
pdb|2E4V|B Chain B, Crystal Structure Of The Extracellular Region Of The Group
Ii Metabotropic Glutamate Receptor Complexed With Dcg-Iv
pdb|2E4W|A Chain A, Crystal Structure Of The Extracellular Region Of The Group
Ii Metabotropic Glutamate Receptor Complexed With
1s,3s-Acpd
pdb|2E4W|B Chain B, Crystal Structure Of The Extracellular Region Of The Group
Ii Metabotropic Glutamate Receptor Complexed With
1s,3s-Acpd
pdb|2E4X|A Chain A, Crystal Structure Of The Extracellular Region Of The Group
Ii Metabotropic Glutamate Receptor Complexed With
1s,3r-Acpd
pdb|2E4X|B Chain B, Crystal Structure Of The Extracellular Region Of The Group
Ii Metabotropic Glutamate Receptor Complexed With
1s,3r-Acpd
pdb|2E4Y|A Chain A, Crystal Structure Of The Extracellular Region Of The Group
Ii Metabotropic Glutamate Receptor Complexed With
2r,4r-Apdc
pdb|2E4Y|B Chain B, Crystal Structure Of The Extracellular Region Of The Group
Ii Metabotropic Glutamate Receptor Complexed With
2r,4r-Apdc
Length = 555
Score = 64.3 bits (155), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 51/233 (21%), Positives = 101/233 (43%), Gaps = 34/233 (14%)
Query: 55 AVKDVNSNSSILHGTKLNITMQSSNCSGFIGMVEALRFMETD------------------ 96
A+ ++N ++ +L G KL + + + + ++L F+
Sbjct: 51 AIDEINKDNYLLPGVKLGVHILDTCSRDTYALEQSLEFVRASLTKVDEAEYMCPDGSYAI 110
Query: 97 -------IVAIIGPQCSTVAHIVSYVSNELQVPLLSFGVTDPTLSSL-QYPFFVRTTQSD 148
I +IG S+V+ V+ + Q+P +S+ T LS +Y +F RT D
Sbjct: 111 QENIPLLIAGVIGGSYSSVSIQVANLLRLFQIPQISYASTSAKLSDKSRYDYFARTVPPD 170
Query: 149 SYQMTAVAEMVSYYGWNAVSVIFVDNEYGRNGVSALNDKLAERRCRISYKSGIPPESGVN 208
YQ A+AE++ ++ W VS + + +YG G+ A + R I+ + S +
Sbjct: 171 FYQAKAMAEILRFFNWTYVSTVASEGDYGETGIEAFEQEARLRNICIATAEKV-GRSNIR 229
Query: 209 TGYVMDLLVKVALME--SRVIVLHVSPSLGFQVFSVAKYLGMMGNGYVWIATD 259
Y D +++ L + +RV+VL + ++ + A + + W+A+D
Sbjct: 230 KSY--DSVIRELLQKPNARVVVLFMRSDDSRELIAAANRVNA---SFTWVASD 277
>pdb|1EWK|A Chain A, Crystal Structure Of Metabotropic Glutamate Receptor
Subtype 1 Complexed With Glutamate
pdb|1EWK|B Chain B, Crystal Structure Of Metabotropic Glutamate Receptor
Subtype 1 Complexed With Glutamate
pdb|1EWT|A Chain A, Crystal Structure Of Metabotropic Glutamate Receptor
Subtype 1 Ligand Free Form I
pdb|1EWT|B Chain B, Crystal Structure Of Metabotropic Glutamate Receptor
Subtype 1 Ligand Free Form I
pdb|1EWV|A Chain A, Crystal Structure Of Metabotropic Glutamate Receptor
Subtype 1 Ligand Free Form Ii
pdb|1EWV|B Chain B, Crystal Structure Of Metabotropic Glutamate Receptor
Subtype 1 Ligand Free Form Ii
pdb|1ISR|A Chain A, Crystal Structure Of Metabotropic Glutamate Receptor
Subtype 1 Complexed With Glutamate And Gadolinium Ion
pdb|1ISS|A Chain A, Crystal Structure Of Metabotropic Glutamate Receptor
Subtype 1 Complexed With An Antagonist
pdb|1ISS|B Chain B, Crystal Structure Of Metabotropic Glutamate Receptor
Subtype 1 Complexed With An Antagonist
Length = 490
Score = 62.4 bits (150), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 74/331 (22%), Positives = 140/331 (42%), Gaps = 26/331 (7%)
Query: 97 IVAIIGPQCSTVAHIVSYVSNELQVPLLSFGVTDPTLSSLQ-YPFFVRTTQSDSYQMTAV 155
I +IGP S+VA V + +P +++ T LS Y +F+R SD+ Q A+
Sbjct: 124 IAGVIGPGSSSVAIQVQNLLQLFDIPQIAYSATSIDLSDKTLYKYFLRVVPSDTLQARAM 183
Query: 156 AEMVSYYGWNAVSVIFVDNEYGRNGVSALNDKLAERRCRISYKSGIPPESGVNTGYVMDL 215
++V Y W VS + + YG +G+ A + A+ I++ I +G + +
Sbjct: 184 LDIVKRYNWTYVSAVHTEGNYGESGMDAFKELAAQEGLCIAHSDKIYSNAGEKSFDRLLR 243
Query: 216 LVKVALMESRVIVLHVSPSLGFQVFSVAKYLGMMGNGYVWIATDWLA--------YMLD- 266
++ L ++RV+V + S + LG++G + I +D A Y ++
Sbjct: 244 KLRERLPKARVVVCFCEGMTVRGLLSAMRRLGVVGE-FSLIGSDGWADRDEVIEGYEVEA 302
Query: 267 ----SASLPSETLESMQGVLVLRQHIPESDRKKNFLSRWKNLTGGSLGMNSYGLYAYDSV 322
+ L S + S L+ + + R F W++ L + + V
Sbjct: 303 NGGITIKLQSPEVRSFDDYF-LKLRLDTNTRNPWFPEFWQHRFQCRLPGHLLENPNFKKV 361
Query: 323 WLLAHAIESFFNQGGKISFSNDSRLKTMEG-GNLHL----GAMSIFD-----DGMLLLGN 372
++E + Q K+ F ++ G N+H G + + D DG LL
Sbjct: 362 CTGNESLEENYVQDSKMGFVINAIYAMAHGLQNMHHALCPGHVGLCDAMKPIDGRKLLDF 421
Query: 373 ILQSNLVGLTGPLKFNSDRSLIHAAYDIINV 403
+++S+ VG++G + ++ YDI+N+
Sbjct: 422 LIKSSFVGVSGEEVWFDEKGDAPGRYDIMNL 452
>pdb|3KS9|A Chain A, Metabotropic Glutamate Receptor Mglur1 Complexed With
Ly341495 Antagonist
pdb|3KS9|B Chain B, Metabotropic Glutamate Receptor Mglur1 Complexed With
Ly341495 Antagonist
Length = 496
Score = 61.2 bits (147), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 72/331 (21%), Positives = 140/331 (42%), Gaps = 26/331 (7%)
Query: 97 IVAIIGPQCSTVAHIVSYVSNELQVPLLSFGVTDPTLSSLQ-YPFFVRTTQSDSYQMTAV 155
I +IGP S+VA V + +P +++ T LS Y +F+R SD+ Q A+
Sbjct: 129 IAGVIGPGSSSVAIQVQNLLQLFDIPQIAYSATSIDLSDKTLYKYFLRVVPSDTLQARAM 188
Query: 156 AEMVSYYGWNAVSVIFVDNEYGRNGVSALNDKLAERRCRISYKSGIPPESGVNTGYVMDL 215
++V Y W VS + + YG +G+ A + A+ I++ I +G + +
Sbjct: 189 LDIVKRYNWTYVSAVHTEGNYGESGMDAFKELAAQEGLSIAHSDKIYSNAGEKSFDRLLR 248
Query: 216 LVKVALMESRVIVLHVSPSLGFQVFSVAKYLGMMGNGYVWIATDWLA--------YMLD- 266
++ L ++RV+V + S + LG++G + I +D A Y ++
Sbjct: 249 KLRERLPKARVVVCFCEGMTVRGLLSAMRRLGVVGE-FSLIGSDGWADRDEVIEGYEVEA 307
Query: 267 ----SASLPSETLESMQGVLVLRQHIPESDRKKNFLSRWKNLTGGSLGMNSYGLYAYDSV 322
+ L S + S L+ + + R F W++ L + + +
Sbjct: 308 NGGITIKLQSPEVRSFDDYF-LKLRLDTNTRNPWFPEFWQHRFQCRLPGHLLENPNFKRI 366
Query: 323 WLLAHAIESFFNQGGKISFSNDSRLKTMEG-GNLHL----GAMSIFD-----DGMLLLGN 372
++E + Q K+ F ++ G N+H G + + D DG LL
Sbjct: 367 CTGNESLEENYVQDSKMGFVINAIYAMAHGLQNMHHALCPGHVGLCDAMKPIDGSKLLDF 426
Query: 373 ILQSNLVGLTGPLKFNSDRSLIHAAYDIINV 403
+++S+ +G++G + ++ YDI+N+
Sbjct: 427 LIKSSFIGVSGEEVWFDEKGDAPGRYDIMNL 457
>pdb|3LMK|A Chain A, Ligand Binding Domain Of Metabotropoc Glutamate Receptor
Mglur5 Complexed With Glutamate
pdb|3LMK|B Chain B, Ligand Binding Domain Of Metabotropoc Glutamate Receptor
Mglur5 Complexed With Glutamate
Length = 492
Score = 59.7 bits (143), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 80/360 (22%), Positives = 145/360 (40%), Gaps = 53/360 (14%)
Query: 97 IVAIIGPQCSTVAHIVSYVSNELQVPLLSFGVTDPTLSSLQ-YPFFVRTTQSDSYQMTAV 155
IV +IGP S+VA V + +P +++ T LS + +F+R SD+ Q A+
Sbjct: 130 IVGVIGPGSSSVAIQVQNLLQLFNIPQIAYSATSMDLSDKTLFKYFMRVVPSDAQQARAM 189
Query: 156 AEMVSYYGWNAVSVIFVDNEYGRNGVSALNDKLAERRCRISYKSGIPPESGVNTGYVMDL 215
++V Y W VS + + YG +G+ A D A+ I++ I +G + D
Sbjct: 190 VDIVKRYNWTYVSAVHTEGNYGESGMEAFKDMSAKEGISIAHSYKIYSNAGEQS---FDK 246
Query: 216 LVK---VALMESRVIVLHVSPSLGFQVFSVAKYLGMMGNGYVWIATDWLAYMLDSASLPS 272
L+K L ++RV+ + + LG+ G ++ + +D A D
Sbjct: 247 LLKKLTSHLPKARVVACFCEGMTVRGLLMAMRRLGLAGE-FLLLGSDGWADRYDVTD--G 303
Query: 273 ETLESMQGVLVLRQH-------------IPESDRKKNFLSR-WKN-----LTGGSLGMNS 313
E++ G+ + Q PE++ + + W++ L G +
Sbjct: 304 YQREAVGGITIKLQSPDVKWFDDYYLKLRPETNHRNPWFQEFWQHRFQCRLEGFPQENSK 363
Query: 314 YGLYAYDSVWLLAHAIESFFNQGGKISFSNDSRLKTMEGGNLHLGAMSIFD--------- 364
Y S+ L H + Q K+ F ++ + +M G LH MS+
Sbjct: 364 YNKTCNSSLTLKTHHV-----QDSKMGFVINA-IYSMAYG-LHNMQMSLCPGYAGLCDAM 416
Query: 365 ---DGMLLLGNILQSNLVGLTGPLKFNSDRSLIHAAYDIINVIGTG-----FRMIGYWSN 416
DG LL +++++N G++G + Y+I+N G + +G W N
Sbjct: 417 KPIDGRKLLESLMKTNFTGVSGDTILFDENGDSPGRYEIMNFKEMGKDYFDYINVGSWDN 476
>pdb|3QEL|A Chain A, Crystal Structure Of Amino Terminal Domains Of The Nmda
Receptor Subunit Glun1 And Glun2b In Complex With
Ifenprodil
pdb|3QEL|C Chain C, Crystal Structure Of Amino Terminal Domains Of The Nmda
Receptor Subunit Glun1 And Glun2b In Complex With
Ifenprodil
pdb|3QEM|A Chain A, Crystal Structure Of Amino Terminal Domains Of The Nmda
Receptor Subunit Glun1 And Glun2b In Complex With Ro
25-6981
pdb|3QEM|C Chain C, Crystal Structure Of Amino Terminal Domains Of The Nmda
Receptor Subunit Glun1 And Glun2b In Complex With Ro
25-6981
Length = 383
Score = 58.5 bits (140), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 99/450 (22%), Positives = 169/450 (37%), Gaps = 98/450 (21%)
Query: 29 PAVVNVGALFTLDSTIGRVAKIAIEEAVKDVNSNSSILHGTKLNITMQSSNCSGFIGMVE 88
P +VN+GA+ + ++ + A+ +A K + L T ++T + + + + E
Sbjct: 2 PKIVNIGAVLSTKKH-EQIFREAVNQANKRHFTRKIQLQAT--SVTHRPNAIQMALSVCE 58
Query: 89 ALRFMETDIVAIIGPQCSTVAHI----VSYVSNELQVPLLSFGVTDPTLSSLQYPF-FVR 143
L + + + P T H+ +SY + ++P++ S F+R
Sbjct: 59 DLISSQVYAILVSHPPAPT-DHLTPTPISYTAGFYRIPVIGLTTRMSIYSDKSIHLSFLR 117
Query: 144 TTQSDSYQMTAVAEMVSYYGWNAVSVIFVDNEYGRNGVSALNDKLAERRCR--------- 194
T S+Q EM+ + WN V +I D+ GR L L + +
Sbjct: 118 TVPPYSHQALVWFEMMRLFNWNHVILIVSDDHEGRAAQKKLETLLEGKESKSKKRNYENL 177
Query: 195 --ISYKSGIPPESGV------NTGYVMDLLVKVALMESRVIVLHVSPSLGFQVFSVAKYL 246
+SY + P++ T + LL++ +E+RVI+L S V+ A L
Sbjct: 178 DQLSYDNKRGPKADKVLQFEPGTKNLTALLLEAKELEARVIILSASEDDATAVYKSAAML 237
Query: 247 GMMGNGYVW------IATDWLAYMLDSASLPSETLESMQGVLVLRQHIPESDRKKNFLSR 300
M G GYVW I+ L Y D G++ L+ L
Sbjct: 238 DMTGAGYVWLVGEREISGSALRYAPD-------------GIIGLQ------------LIN 272
Query: 301 WKNLTGGSLGMNSYGLYAYDSVWLLAHAIESFFNQGGKISFSNDSRLKTMEGGNLHLGAM 360
KN + + D+V ++A AI F + ++ R G +G
Sbjct: 273 GKNESA----------HISDAVAVVAQAIHELFEME---NITDPPR-----GC---VGNT 311
Query: 361 SIFDDGMLLLGNILQSNLV-GLTGPLKFNSDRSLIHAAYDIINVIGTGFRMIGYWSNYSG 419
+I+ G L ++ S G+TG ++FN D A Y I+N+ +G
Sbjct: 312 NIWKTGPLFKRVLMSSKYPDGVTGRIEFNEDGDRKFAQYSIMNLQNRKLVQVGI------ 365
Query: 420 LSKEPPETLYAQPFNRSSTIQHLHSVIWPG 449
FN S IQ+ +IWPG
Sbjct: 366 -------------FNGSYIIQNDRKIIWPG 382
>pdb|3H6G|A Chain A, Crystal Structure Of The Glur6 Amino Terminal Domain Dimer
Assembly
pdb|3H6G|B Chain B, Crystal Structure Of The Glur6 Amino Terminal Domain Dimer
Assembly
pdb|3H6H|A Chain A, Crystal Structure Of The Glur6 Amino Terminal Domain Dimer
Assembly Mpd Form
pdb|3H6H|B Chain B, Crystal Structure Of The Glur6 Amino Terminal Domain Dimer
Assembly Mpd Form
pdb|3QLV|C Chain C, Crystal Structure Of The Gluk2GLUK5 (GLUR6KA2) ATD
TETRAMER ASSEMBLY
pdb|3QLV|D Chain D, Crystal Structure Of The Gluk2GLUK5 (GLUR6KA2) ATD
TETRAMER ASSEMBLY
pdb|3QLV|F Chain F, Crystal Structure Of The Gluk2GLUK5 (GLUR6KA2) ATD
TETRAMER ASSEMBLY
pdb|3QLV|H Chain H, Crystal Structure Of The Gluk2GLUK5 (GLUR6KA2) ATD
TETRAMER ASSEMBLY
pdb|3QLV|J Chain J, Crystal Structure Of The Gluk2GLUK5 (GLUR6KA2) ATD
TETRAMER ASSEMBLY
Length = 395
Score = 57.0 bits (136), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 90/405 (22%), Positives = 160/405 (39%), Gaps = 41/405 (10%)
Query: 31 VVNVGALFT-LDSTIGRVAKIAIEEAVKDVNSNSSILHGTKLNITMQSSNC-SGFIGMVE 88
V+ G +F ++S ++A AV +N N ++L T L Q N F +
Sbjct: 4 VLRFGGIFEYVESGPMGAEELAFRFAVNTINRNRTLLPNTTLTYDTQKINLYDSFEASKK 63
Query: 89 ALRFMETDIVAIIGPQCSTVAHIVSYVSNELQVPLLSFGVTDPTLSSLQYPFFVRTTQSD 148
A + + AI GP S+ A+ V + N L VP + +S + F+V
Sbjct: 64 ACDQLSLGVAAIFGPSHSSSANAVQSICNALGVPHIQTRWKH-QVSDNKDSFYVSLYPDF 122
Query: 149 SYQMTAVAEMVSYYGWNAVSVIFVDNEYGRNGVSALNDKL-AERRCRISYKSGIPPESGV 207
S A+ ++V ++ W V+V++ D+ G+ L + + A R + K P
Sbjct: 123 SSLSRAILDLVQFFKWKTVTVVYDDS----TGLIRLQELIKAPSRYNLRLKIRQLP---A 175
Query: 208 NTGYVMDLLVKVALMESRVIVLHVSPSLGFQVFSVAKYLGMMGNGYVWIATDWLAYMLDS 267
+T LL ++ + ++ S + + A +GMM Y +I T + LD
Sbjct: 176 DTKDAKPLLKEMKRGKEFHVIFDCSHEMAAGILKQALAMGMMTEYYHYIFTTLDLFALDV 235
Query: 268 ASLPSETLESMQGVLVLRQHIPESDRKKNFLSRW---------KNLTGGSLG-MNSYGLY 317
+ +M G +L E+ + + + +W K +G G M +
Sbjct: 236 EPYRYSGV-NMTGFRILNT---ENTQVSSIIEKWSMERLQAPPKPDSGLLDGFMTTDAAL 291
Query: 318 AYDSVWLLAHAIESFFNQGGKISFSNDSRLKTMEGGNLHLGAMSIFDDGMLLLGNILQSN 377
YD+V +++ A++ F M +L + G + I +++
Sbjct: 292 MYDAVHVVSVAVQQF---------------PQMTVSSLQCNRHKPWRFGTRFMSLIKEAH 336
Query: 378 LVGLTGPLKFNSDRSL-IHAAYDIINVIGTGFRMIGYWSNYSGLS 421
GLTG + FN L D+I++ G IG W SGL+
Sbjct: 337 WEGLTGRITFNKTNGLRTDFDLDVISLKEEGLEKIGTWDPASGLN 381
>pdb|3QLT|A Chain A, Crystal Structure Of A Gluk2 (Glur6) Glycan Wedge
Homodimer Assembly
pdb|3QLT|B Chain B, Crystal Structure Of A Gluk2 (Glur6) Glycan Wedge
Homodimer Assembly
pdb|3QLU|C Chain C, Crystal Structure Of The Gluk2GLUK5 (GLUR6KA2) ATD DIMER
ASSEMBLY
pdb|3QLU|D Chain D, Crystal Structure Of The Gluk2GLUK5 (GLUR6KA2) ATD DIMER
ASSEMBLY
Length = 395
Score = 54.7 bits (130), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 89/405 (21%), Positives = 159/405 (39%), Gaps = 41/405 (10%)
Query: 31 VVNVGALFT-LDSTIGRVAKIAIEEAVKDVNSNSSILHGTKLNITMQSSNC-SGFIGMVE 88
V+ G +F ++S ++A AV +N N ++L T L Q N F +
Sbjct: 4 VLRFGGIFEYVESGPMGAEELAFRFAVNTINRNRTLLPNTTLTYDTQKINLYDSFEASKK 63
Query: 89 ALRFMETDIVAIIGPQCSTVAHIVSYVSNELQVPLLSFGVTDPTLSSLQYPFFVRTTQSD 148
A + + AI GP S+ A+ V + N L VP + +S + F+V
Sbjct: 64 ACDQLSLGVAAIFGPSHSSSANAVQSICNALGVPHIQTRWKH-QVSDNKDSFYVSLYPDF 122
Query: 149 SYQMTAVAEMVSYYGWNAVSVIFVDNEYGRNGVSALNDKL-AERRCRISYKSGIPPESGV 207
S A+ ++V ++ W V+V++ D+ G+ L + + A R + K P
Sbjct: 123 SSLSRAILDLVQFFKWKTVTVVYDDS----TGLIRLQELIKAPSRYNLRLKIRQLP---A 175
Query: 208 NTGYVMDLLVKVALMESRVIVLHVSPSLGFQVFSVAKYLGMMGNGYVWIATDWLAYMLDS 267
+T LL ++ + ++ S + + A + MM Y +I T + LD
Sbjct: 176 DTKDAKPLLKEMKRGKEFHVIFDCSHEMAAGILKQALNMSMMTEYYHYIFTTLDLFALDV 235
Query: 268 ASLPSETLESMQGVLVLRQHIPESDRKKNFLSRW---------KNLTGGSLG-MNSYGLY 317
+ +M G +L E+ + + + +W K +G G M +
Sbjct: 236 EPYRYSGV-NMTGFRILNT---ENTQVSSIIEKWSMERLQAPPKPDSGLLDGFMTTDAAL 291
Query: 318 AYDSVWLLAHAIESFFNQGGKISFSNDSRLKTMEGGNLHLGAMSIFDDGMLLLGNILQSN 377
YD+V +++ A++ F M +L + G + I +++
Sbjct: 292 MYDAVHVVSVAVQQF---------------PQMTVSSLQCNRHKPWRFGTRFMSLIKEAH 336
Query: 378 LVGLTGPLKFNSDRSL-IHAAYDIINVIGTGFRMIGYWSNYSGLS 421
GLTG + FN L D+I++ G IG W SGL+
Sbjct: 337 WEGLTGRITFNKTNGLRTDFDLDVISLKEEGLEKIGTWDPASGLN 381
>pdb|3QEK|A Chain A, Crystal Structure Of Amino Terminal Domain Of The Nmda
Receptor Subunit Glun1
pdb|3QEK|B Chain B, Crystal Structure Of Amino Terminal Domain Of The Nmda
Receptor Subunit Glun1
Length = 384
Score = 52.8 bits (125), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 95/451 (21%), Positives = 160/451 (35%), Gaps = 100/451 (22%)
Query: 29 PAVVNVGALFTLDSTIGRVAKIAIEEAVKDVNSNSSILHGTKLNITMQSSNCSGFIGMVE 88
P +VN+GA+ + ++ + A+ +A K + L T ++T + + + + E
Sbjct: 3 PKIVNIGAVLSTKKH-EQIFREAVNQANKRHFTRKIQLQAT--SVTHRPNAIQXALSVCE 59
Query: 89 ALRFMETDIVAII-----GPQCSTVAHIVSYVSNELQVPLLSFGVTDPTLSSLQYPF-FV 142
L + + + AI+ P +SY + ++P++ S F+
Sbjct: 60 DL--ISSQVYAILVSHPPAPTDHLTPTPISYTAGFYRIPVIGLTTRXSIYSDKSIHLSFL 117
Query: 143 RTTQSDSYQMTAVAEMVSYYGWNAVSVIFVDNEYGRNGVSALNDKLAERRCR-------- 194
RT S+Q E + WN V +I D+ GR L L + +
Sbjct: 118 RTVPPYSHQALVWFEXXRLFNWNHVILIVSDDHEGRAAQKKLETLLEGKESKSKKRNYEN 177
Query: 195 ---ISYKSGIPPESGV------NTGYVMDLLVKVALMESRVIVLHVSPSLGFQVFSVAKY 245
+SY + P++ T + LL++ +E+RVI+L S V+ A
Sbjct: 178 LDQLSYDNKRGPKADKVLQFEPGTKNLTALLLEAKELEARVIILSASEDDATAVYKSAAX 237
Query: 246 LGMMGNGYVW------IATDWLAYMLDSASLPSETLESMQGVLVLRQHIPESDRKKNFLS 299
L G GYVW I+ L Y D G++ L+ L
Sbjct: 238 LDXTGAGYVWLVGEREISGSALRYAPD-------------GIIGLQ------------LI 272
Query: 300 RWKNLTGGSLGMNSYGLYAYDSVWLLAHAIESFFNQGGKISFSNDSRLKTMEGGNLHLGA 359
KN + + D+V ++A AI F + +G
Sbjct: 273 NGKNESA----------HISDAVAVVAQAIHELFEXEN-----------ITDPPRGCVGN 311
Query: 360 MSIFDDGMLLLGNILQSNLV-GLTGPLKFNSDRSLIHAAYDIINVIGTGFRMIGYWSNYS 418
+I+ G L + S G+TG ++FN D A Y I N+ +G
Sbjct: 312 TNIWKTGPLFKRVLXSSKYPDGVTGRIEFNEDGDRKFAQYSIXNLQNRKLVQVGI----- 366
Query: 419 GLSKEPPETLYAQPFNRSSTIQHLHSVIWPG 449
FN S IQ+ +IWPG
Sbjct: 367 --------------FNGSYIIQNDRKIIWPG 383
>pdb|2LIV|A Chain A, Periplasmic Binding Protein Structure And Function.
Refined X-Ray Structures Of The
LeucineISOLEUCINEVALINE-Binding Protein And Its Complex
With Leucine
Length = 344
Score = 51.6 bits (122), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 42/172 (24%), Positives = 72/172 (41%), Gaps = 2/172 (1%)
Query: 31 VVNVGALFTLDSTIGRVAKIAIEEAVKDVNSNSSILHGTKLNITMQSSNCSGFIGMVEAL 90
V VGA+ + G E+AV D+N+ I G KL I C + A
Sbjct: 5 VAVVGAMSGPVAQYGDQEFTGAEQAVADINAKGGI-KGNKLQIAKYDDACDPKQAVAVAN 63
Query: 91 RFMETDIVAIIGPQCSTVAHIVSYVSNELQVPLLSFGVTDPTLSSLQYPFFVRTTQSDSY 150
+ + I +IG CS+ S + + + +++ T P L++ Y +RTT DS
Sbjct: 64 KVVNDGIKYVIGHLCSSSTQPASDIYEDEGILMITPAATAPELTARGYQLILRTTGLDSD 123
Query: 151 Q-MTAVAEMVSYYGWNAVSVIFVDNEYGRNGVSALNDKLAERRCRISYKSGI 201
Q TA ++ ++++ +YG A+ D L + + + GI
Sbjct: 124 QGPTAAKYILEKVKPQRIAIVHDKQQYGEGLARAVQDGLKKGNANVVFFDGI 175
>pdb|1Z15|A Chain A, Crystal Structure Analysis Of Periplasmic
Leu/ile/val-binding Protein In Superopen Form
pdb|1Z16|A Chain A, Crystal Structure Analysis Of Periplasmic
Leu/ile/val-binding Protein With Bound Leucine
pdb|1Z17|A Chain A, Crystal Structure Analysis Of Periplasmic
LeuILEVAL-Binding Protein With Bound Ligand Isoleucine
pdb|1Z18|A Chain A, Crystal Structure Analysis Of Periplasmic
LeuILEVAL-Binding Protein With Bound Valine
Length = 344
Score = 51.6 bits (122), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 42/172 (24%), Positives = 72/172 (41%), Gaps = 2/172 (1%)
Query: 31 VVNVGALFTLDSTIGRVAKIAIEEAVKDVNSNSSILHGTKLNITMQSSNCSGFIGMVEAL 90
V VGA+ + G E+AV D+N+ I G KL I C + A
Sbjct: 5 VAVVGAMSGPVAQYGDQEFTGAEQAVADINAKGGI-KGNKLQIVKYDDACDPKQAVAVAN 63
Query: 91 RFMETDIVAIIGPQCSTVAHIVSYVSNELQVPLLSFGVTDPTLSSLQYPFFVRTTQSDSY 150
+ + I +IG CS+ S + + + +++ T P L++ Y +RTT DS
Sbjct: 64 KVVNDGIKYVIGHLCSSSTQPASDIYEDEGILMITPAATAPELTARGYQLILRTTGLDSD 123
Query: 151 Q-MTAVAEMVSYYGWNAVSVIFVDNEYGRNGVSALNDKLAERRCRISYKSGI 201
Q TA ++ ++++ +YG A+ D L + + + GI
Sbjct: 124 QGPTAAKYILEKVKPQRIAIVHDKQQYGEGLARAVQDGLKKGNANVVFFDGI 175
>pdb|1TXF|A Chain A, Crystal Structure Of The Glur5 Ligand Binding Core In
Complex With Glutamate At 2.1 Angstrom Resolution
pdb|3C31|A Chain A, Crystal Structure Of Glur5 Ligand-Binding Core In Complex
With Lithium At 1.49 Angstrom Resolution
pdb|3C31|B Chain B, Crystal Structure Of Glur5 Ligand-Binding Core In Complex
With Lithium At 1.49 Angstrom Resolution
pdb|3C32|A Chain A, Crystal Structure Of Glur5 Ligand-Binding Core In Complex
With Sodium At 1.72 Angstrom Resolution
pdb|3C32|B Chain B, Crystal Structure Of Glur5 Ligand-Binding Core In Complex
With Sodium At 1.72 Angstrom Resolution
pdb|3C33|A Chain A, Crystal Structure Of Glur5 Ligand-Binding Core In Complex
With Potassium At 1.78 Angstrom Resolution
pdb|3C33|B Chain B, Crystal Structure Of Glur5 Ligand-Binding Core In Complex
With Potassium At 1.78 Angstrom Resolution
pdb|3C34|A Chain A, Crystal Structure Of Glur5 Ligand-Binding Core In Complex
With Rubidium At 1.82 Angstrom Resolution
pdb|3C34|B Chain B, Crystal Structure Of Glur5 Ligand-Binding Core In Complex
With Rubidium At 1.82 Angstrom Resolution
pdb|3C35|A Chain A, Crystal Structure Of Glur5 Ligand-Binding Core In Complex
With Cesium At 1.97 Angstrom Resolution
pdb|3C35|B Chain B, Crystal Structure Of Glur5 Ligand-Binding Core In Complex
With Cesium At 1.97 Angstrom Resolution
pdb|3C36|A Chain A, Crystal Structure Of Glur5 Ligand-Binding Core In Complex
With Ammonium Ions At 1.68 Angstrom Resolution
pdb|3C36|B Chain B, Crystal Structure Of Glur5 Ligand-Binding Core In Complex
With Ammonium Ions At 1.68 Angstrom Resolution
Length = 258
Score = 49.3 bits (116), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 26/100 (26%), Positives = 50/100 (50%), Gaps = 5/100 (5%)
Query: 477 YREFVSKVRGSDMFQGFCIDVFTAAVNLLPYAVPYQFV---AFGDGHKNPSYTQLVDSIT 533
YR+ + G+D F+G+C+D+ N+L + + V +G + + +V +
Sbjct: 19 YRKSDKPLYGNDRFEGYCLDLLKELSNILGFLYDVKLVPDGKYGAQNDKGEWNGMVKELI 78
Query: 534 TGVFDAVVGDITIVTNRTKIVDFSQPYAASGLVVVVPFRK 573
D V +TI R K++DFS+P+ G+ ++ +RK
Sbjct: 79 DHRADLAVAPLTITYVREKVIDFSKPFMTLGISIL--YRK 116
Score = 40.8 bits (94), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 32/71 (45%)
Query: 750 AVVDERPYVELFLSSQCSFRIVGQEFTKSGWGFAFPRDSPLAVDLSSAILELAENGDLQR 809
A++ E +E C+ +G G+G P SP ++ AIL+L E G L
Sbjct: 186 ALLMESTSIEYVTQRNCNLTQIGGLIDSKGYGVGTPIGSPYRDKITIAILQLQEEGKLHM 245
Query: 810 IHDKWLMKSSC 820
+ +KW + C
Sbjct: 246 MKEKWWRGNGC 256
>pdb|2F34|A Chain A, Crystal Structure Of The Glur5 Ligand Binding Core Dimer
With Ubp310 At 1.74 Angstroms Resolution
pdb|2F34|B Chain B, Crystal Structure Of The Glur5 Ligand Binding Core Dimer
With Ubp310 At 1.74 Angstroms Resolution
pdb|2F35|A Chain A, Crystal Structure Of The Glur5 Ligand Binding Core With
Ubp302 At 1.87 Angstroms Resolution
pdb|2F35|B Chain B, Crystal Structure Of The Glur5 Ligand Binding Core With
Ubp302 At 1.87 Angstroms Resolution
pdb|2F36|A Chain A, Crystal Structure Of The Glur5 Ligand Binding Core Dimer
With Glutamate At 2.1 Angstroms Resolution
pdb|2F36|B Chain B, Crystal Structure Of The Glur5 Ligand Binding Core Dimer
With Glutamate At 2.1 Angstroms Resolution
pdb|2F36|C Chain C, Crystal Structure Of The Glur5 Ligand Binding Core Dimer
With Glutamate At 2.1 Angstroms Resolution
pdb|2F36|D Chain D, Crystal Structure Of The Glur5 Ligand Binding Core Dimer
With Glutamate At 2.1 Angstroms Resolution
pdb|2OJT|A Chain A, Structure And Mechanism Of Kainate Receptor Modulation By
Anions
pdb|2OJT|B Chain B, Structure And Mechanism Of Kainate Receptor Modulation By
Anions
pdb|2QS1|A Chain A, Crystal Structure Of The Glur5 Ligand Binding Core Dimer
In Complex With Ubp315 At 1.80 Angstroms Resolution
pdb|2QS1|B Chain B, Crystal Structure Of The Glur5 Ligand Binding Core Dimer
In Complex With Ubp315 At 1.80 Angstroms Resolution
pdb|2QS2|A Chain A, Crystal Structure Of The Glur5 Ligand Binding Core Dimer
In Complex With Ubp318 At 1.80 Angstroms Resolution
pdb|2QS2|B Chain B, Crystal Structure Of The Glur5 Ligand Binding Core Dimer
In Complex With Ubp318 At 1.80 Angstroms Resolution
pdb|2QS3|A Chain A, Crystal Structure Of The Glur5 Ligand Binding Core Dimer
In Complex With Ubp316 At 1.76 Angstroms Resolution
pdb|2QS3|B Chain B, Crystal Structure Of The Glur5 Ligand Binding Core Dimer
In Complex With Ubp316 At 1.76 Angstroms Resolution
pdb|2QS4|A Chain A, Crystal Structure Of The Glur5 Ligand Binding Core Dimer
In Complex With Ly466195 At 1.58 Angstroms Resolution
pdb|2QS4|B Chain B, Crystal Structure Of The Glur5 Ligand Binding Core Dimer
In Complex With Ly466195 At 1.58 Angstroms Resolution
pdb|2QS4|C Chain C, Crystal Structure Of The Glur5 Ligand Binding Core Dimer
In Complex With Ly466195 At 1.58 Angstroms Resolution
pdb|2QS4|D Chain D, Crystal Structure Of The Glur5 Ligand Binding Core Dimer
In Complex With Ly466195 At 1.58 Angstroms Resolution
Length = 258
Score = 49.3 bits (116), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 26/100 (26%), Positives = 50/100 (50%), Gaps = 5/100 (5%)
Query: 477 YREFVSKVRGSDMFQGFCIDVFTAAVNLLPYAVPYQFV---AFGDGHKNPSYTQLVDSIT 533
YR+ + G+D F+G+C+D+ N+L + + V +G + + +V +
Sbjct: 19 YRKSDKPLYGNDRFEGYCLDLLKELSNILGFLYDVKLVPDGKYGAQNDKGEWNGMVKELI 78
Query: 534 TGVFDAVVGDITIVTNRTKIVDFSQPYAASGLVVVVPFRK 573
D V +TI R K++DFS+P+ G+ ++ +RK
Sbjct: 79 DHRADLAVAPLTITYVREKVIDFSKPFMTLGISIL--YRK 116
Score = 40.8 bits (94), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 32/71 (45%)
Query: 750 AVVDERPYVELFLSSQCSFRIVGQEFTKSGWGFAFPRDSPLAVDLSSAILELAENGDLQR 809
A++ E +E C+ +G G+G P SP ++ AIL+L E G L
Sbjct: 186 ALLMESTSIEYVTQRNCNLTQIGGLIDSKGYGVGTPIGSPYRDKITIAILQLQEEGKLHM 245
Query: 810 IHDKWLMKSSC 820
+ +KW + C
Sbjct: 246 MKEKWWRGNGC 256
>pdb|2WKY|A Chain A, Crystal Structure Of The Ligand-Binding Core Of Glur5 In
Complex With The Agonist 4-Ahcp
pdb|2WKY|B Chain B, Crystal Structure Of The Ligand-Binding Core Of Glur5 In
Complex With The Agonist 4-Ahcp
Length = 258
Score = 49.3 bits (116), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 26/100 (26%), Positives = 50/100 (50%), Gaps = 5/100 (5%)
Query: 477 YREFVSKVRGSDMFQGFCIDVFTAAVNLLPYAVPYQFV---AFGDGHKNPSYTQLVDSIT 533
YR+ + G+D F+G+C+D+ N+L + + V +G + + +V +
Sbjct: 19 YRKSDKPLYGNDRFEGYCLDLLKELSNILGFLYDVKLVPDGKYGAQNDKGEWNGMVKELI 78
Query: 534 TGVFDAVVGDITIVTNRTKIVDFSQPYAASGLVVVVPFRK 573
D V +TI R K++DFS+P+ G+ ++ +RK
Sbjct: 79 DHRADLAVAPLTITYVREKVIDFSKPFMTLGISIL--YRK 116
Score = 40.8 bits (94), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 32/71 (45%)
Query: 750 AVVDERPYVELFLSSQCSFRIVGQEFTKSGWGFAFPRDSPLAVDLSSAILELAENGDLQR 809
A++ E +E C+ +G G+G P SP ++ AIL+L E G L
Sbjct: 186 ALLMESTSIEYVTQRNCNLTQIGGLIDSKGYGVGTPIGSPYRDKITIAILQLQEEGKLHM 245
Query: 810 IHDKWLMKSSC 820
+ +KW + C
Sbjct: 246 MKEKWWRGNGC 256
>pdb|2ZNS|A Chain A, Crystal Structure Of The Ligand-Binding Core Of The Human
Ionotropic Glutamate Receptor, Glur5, In Complex With
Glutamate
pdb|2ZNT|A Chain A, Crystal Structure Of The Ligand-Binding Core Of The Human
Ionotropic Glutamate Receptor, Glur5, In Complex With A
Novel Selective Agonist, Dysiherbaine
pdb|2ZNU|A Chain A, Crystal Structure Of The Ligand-Binding Core Of The Human
Ionotropic Glutamate Receptor, Glur5, In Complex With A
Novel Selective Agonist, Neodysiherbaine A
pdb|3FUZ|A Chain A, Crystal Structure Of The Human Glutamate Receptor, Glur5,
Ligand- Binding Core In Complex With L-Glutamate In
Space Group P1
pdb|3FUZ|B Chain B, Crystal Structure Of The Human Glutamate Receptor, Glur5,
Ligand- Binding Core In Complex With L-Glutamate In
Space Group P1
pdb|3FV1|A Chain A, Crystal Structure Of The Human Glutamate Receptor, Glur5,
Ligand- Binding Core In Complex With Dysiherbaine In
Space Group P1
pdb|3FV1|B Chain B, Crystal Structure Of The Human Glutamate Receptor, Glur5,
Ligand- Binding Core In Complex With Dysiherbaine In
Space Group P1
pdb|3FV2|A Chain A, Crystal Structure Of The Human Glutamate Receptor, Glur5,
Ligand- Binding Core In Complex With Neodysiherbaine A
In Space Group P1
pdb|3FV2|B Chain B, Crystal Structure Of The Human Glutamate Receptor, Glur5,
Ligand- Binding Core In Complex With Neodysiherbaine A
In Space Group P1
pdb|3FVG|A Chain A, Crystal Structure Of The Human Glutamate Receptor, Glur5,
Ligand- Binding Core In Complex With Msviii-19 In Space
Group P1
pdb|3FVG|B Chain B, Crystal Structure Of The Human Glutamate Receptor, Glur5,
Ligand- Binding Core In Complex With Msviii-19 In Space
Group P1
pdb|3FVK|A Chain A, Crystal Structure Of The Human Glutamate Receptor, Glur5,
Ligand- Binding Core In Complex With
8-Deoxy-Neodysiherbaine A In Space Group P1
pdb|3FVK|B Chain B, Crystal Structure Of The Human Glutamate Receptor, Glur5,
Ligand- Binding Core In Complex With
8-Deoxy-Neodysiherbaine A In Space Group P1
pdb|3FVN|A Chain A, Crystal Structure Of The Human Glutamate Receptor, Glur5,
Ligand- Binding Core In Complex With
9-Deoxy-Neodysiherbaine A In Space Group P1
pdb|3FVN|B Chain B, Crystal Structure Of The Human Glutamate Receptor, Glur5,
Ligand- Binding Core In Complex With
9-Deoxy-Neodysiherbaine A In Space Group P1
pdb|3FVO|A Chain A, Crystal Structure Of The Human Glutamate Receptor, Glur5,
Ligand-Binding Core In Complex With
8-Epi-Neodysiherbaine A In Space Group P1
pdb|3FVO|B Chain B, Crystal Structure Of The Human Glutamate Receptor, Glur5,
Ligand-Binding Core In Complex With
8-Epi-Neodysiherbaine A In Space Group P1
Length = 256
Score = 49.3 bits (116), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 26/100 (26%), Positives = 50/100 (50%), Gaps = 5/100 (5%)
Query: 477 YREFVSKVRGSDMFQGFCIDVFTAAVNLLPYAVPYQFV---AFGDGHKNPSYTQLVDSIT 533
YR+ + G+D F+G+C+D+ N+L + + V +G + + +V +
Sbjct: 18 YRKSDKPLYGNDRFEGYCLDLLKELSNILGFIYDVKLVPDGKYGAQNDKGEWNGMVKELI 77
Query: 534 TGVFDAVVGDITIVTNRTKIVDFSQPYAASGLVVVVPFRK 573
D V +TI R K++DFS+P+ G+ ++ +RK
Sbjct: 78 DHRADLAVAPLTITYVREKVIDFSKPFMTLGISIL--YRK 115
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 32/71 (45%)
Query: 750 AVVDERPYVELFLSSQCSFRIVGQEFTKSGWGFAFPRDSPLAVDLSSAILELAENGDLQR 809
A++ E +E C+ +G G+G P SP ++ AIL+L E G L
Sbjct: 185 ALLMESTSIEYVTQRNCNLTQIGGLIDSKGYGVGTPIGSPYRDKITIAILQLQEEGKLHM 244
Query: 810 IHDKWLMKSSC 820
+ +KW + C
Sbjct: 245 MKEKWWRGNGC 255
>pdb|1YCJ|A Chain A, Crystal Structure Of The Kainate Receptor Glur5 Ligand-
Binding Core In Complex With (S)-Glutamate
pdb|1YCJ|B Chain B, Crystal Structure Of The Kainate Receptor Glur5 Ligand-
Binding Core In Complex With (S)-Glutamate
pdb|1VSO|A Chain A, Crystal Structure Of The Ligand-Binding Core Of Iglur5 In
Complex With The Antagonist (S)-Atpo At 1.85 A
Resolution
pdb|2PBW|A Chain A, Crystal Structure Of The Ligand-Binding Core Of Iglur5 In
Complex With The Partial Agonist Domoic Acid At 2.5 A
Resolution
pdb|2PBW|B Chain B, Crystal Structure Of The Ligand-Binding Core Of Iglur5 In
Complex With The Partial Agonist Domoic Acid At 2.5 A
Resolution
pdb|3GBA|A Chain A, X-Ray Structure Of Iglur5 Ligand-Binding Core (S1s2) In
Complex With Dysiherbaine At 1.35a Resolution
pdb|3GBA|B Chain B, X-Ray Structure Of Iglur5 Ligand-Binding Core (S1s2) In
Complex With Dysiherbaine At 1.35a Resolution
pdb|3GBA|C Chain C, X-Ray Structure Of Iglur5 Ligand-Binding Core (S1s2) In
Complex With Dysiherbaine At 1.35a Resolution
pdb|3GBA|D Chain D, X-Ray Structure Of Iglur5 Ligand-Binding Core (S1s2) In
Complex With Dysiherbaine At 1.35a Resolution
pdb|3GBB|A Chain A, X-Ray Strucutre Of Iglur5 Ligand-Binding Core (S1s2) In
Complex With Msviii-19 At 2.10a Resolution
pdb|3GBB|B Chain B, X-Ray Strucutre Of Iglur5 Ligand-Binding Core (S1s2) In
Complex With Msviii-19 At 2.10a Resolution
pdb|3S2V|A Chain A, Crystal Structure Of The Ligand Binding Domain Of Gluk1 In
Complex With An Antagonist
(S)-1-(2'-Amino-2'-Carboxyethyl)-3-[(2-
Carboxythien-3-Yl)methyl]thieno[3,4-D]pyrimidin-2,
4-Dione At 2.5 A Resolution
pdb|3S2V|B Chain B, Crystal Structure Of The Ligand Binding Domain Of Gluk1 In
Complex With An Antagonist
(S)-1-(2'-Amino-2'-Carboxyethyl)-3-[(2-
Carboxythien-3-Yl)methyl]thieno[3,4-D]pyrimidin-2,
4-Dione At 2.5 A Resolution
pdb|4E0X|A Chain A, Crystal Structure Of The Kainate Receptor Gluk1
Ligand-Binding Domain In Complex With Kainate In The
Absence Of Glycerol
pdb|4E0X|B Chain B, Crystal Structure Of The Kainate Receptor Gluk1
Ligand-Binding Domain In Complex With Kainate In The
Absence Of Glycerol
pdb|4DLD|A Chain A, Crystal Structure Of The Gluk1 Ligand-Binding Domain
(S1s2) In Complex With The Antagonist
(S)-2-Amino-3-(2-(2-Carboxyethyl)-5-Chloro-4-
Nitrophenyl)propionic Acid At 2.0 A Resolution
pdb|4DLD|B Chain B, Crystal Structure Of The Gluk1 Ligand-Binding Domain
(S1s2) In Complex With The Antagonist
(S)-2-Amino-3-(2-(2-Carboxyethyl)-5-Chloro-4-
Nitrophenyl)propionic Acid At 2.0 A Resolution
Length = 257
Score = 49.3 bits (116), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 26/100 (26%), Positives = 50/100 (50%), Gaps = 5/100 (5%)
Query: 477 YREFVSKVRGSDMFQGFCIDVFTAAVNLLPYAVPYQFV---AFGDGHKNPSYTQLVDSIT 533
YR+ + G+D F+G+C+D+ N+L + + V +G + + +V +
Sbjct: 19 YRKSDKPLYGNDRFEGYCLDLLKELSNILGFLYDVKLVPDGKYGAQNDKGEWNGMVKELI 78
Query: 534 TGVFDAVVGDITIVTNRTKIVDFSQPYAASGLVVVVPFRK 573
D V +TI R K++DFS+P+ G+ ++ +RK
Sbjct: 79 DHRADLAVAPLTITYVREKVIDFSKPFMTLGISIL--YRK 116
Score = 40.8 bits (94), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 32/71 (45%)
Query: 750 AVVDERPYVELFLSSQCSFRIVGQEFTKSGWGFAFPRDSPLAVDLSSAILELAENGDLQR 809
A++ E +E C+ +G G+G P SP ++ AIL+L E G L
Sbjct: 186 ALLMESTSIEYVTQRNCNLTQIGGLIDSKGYGVGTPIGSPYRDKITIAILQLQEEGKLHM 245
Query: 810 IHDKWLMKSSC 820
+ +KW + C
Sbjct: 246 MKEKWWRGNGC 256
>pdb|4IO2|A Chain A, Crystal Structure Of The Avglur1 Ligand Binding Domain
Complex With Glutamate At 1.37 Angstrom Resolution
pdb|4IO2|B Chain B, Crystal Structure Of The Avglur1 Ligand Binding Domain
Complex With Glutamate At 1.37 Angstrom Resolution
pdb|4IO3|A Chain A, Crystal Structure Of The Avglur1 Ligand Binding Domain
Complex With Aspartate At 1.66 Angstrom Resolution
pdb|4IO3|B Chain B, Crystal Structure Of The Avglur1 Ligand Binding Domain
Complex With Aspartate At 1.66 Angstrom Resolution
pdb|4IO4|A Chain A, Crystal Structure Of The Avglur1 Ligand Binding Domain
Complex With Serine At 1.94 Angstrom Resolution
pdb|4IO4|B Chain B, Crystal Structure Of The Avglur1 Ligand Binding Domain
Complex With Serine At 1.94 Angstrom Resolution
pdb|4IO5|A Chain A, Crystal Structure Of The Avglur1 Ligand Binding Domain
Complex With Alanine At 1.72 Angstrom Resolution
pdb|4IO5|B Chain B, Crystal Structure Of The Avglur1 Ligand Binding Domain
Complex With Alanine At 1.72 Angstrom Resolution
pdb|4IO6|A Chain A, Crystal Structure Of The Avglur1 Ligand Binding Domain
Complex With Methionine At 1.6 Angstrom Resolution
pdb|4IO6|B Chain B, Crystal Structure Of The Avglur1 Ligand Binding Domain
Complex With Methionine At 1.6 Angstrom Resolution
pdb|4IO7|A Chain A, Crystal Structure Of The Avglur1 Ligand Binding Domain
Complex With Phenylalanine At 1.9 Angstrom Resolution
pdb|4IO7|B Chain B, Crystal Structure Of The Avglur1 Ligand Binding Domain
Complex With Phenylalanine At 1.9 Angstrom Resolution
Length = 248
Score = 48.5 bits (114), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 37/139 (26%), Positives = 60/139 (43%), Gaps = 16/139 (11%)
Query: 690 INGIESLRKSDDP---IGYQEGSFAEYYLSQELNISKSRLVALRTPEDYAKALKDGP--- 743
I+G++ L+ P IG + G+ E Y +E++ L++ ++ +L G
Sbjct: 117 IDGMDDLKNGKIPYNRIGIRIGTAGEDYYLREISGGSRNFYPLKSRQEMYDSLLAGIIDV 176
Query: 744 --GKGGVAAVVDERPYVELFLSSQCSFRIVGQEFTKSGWGFAFPRDSPLAVDLSSAILEL 801
G A V Y C+ +VG++F KS +G P++ A DL IL L
Sbjct: 177 SFMDIGTAEYVTNNIY--------CNLTLVGEDFDKSTFGIVTPKEWLYAKDLDVNILSL 228
Query: 802 AENGDLQRIHDKWLMKSSC 820
E G L + KW +C
Sbjct: 229 RETGILDNLKKKWFQTKAC 247
Score = 37.4 bits (85), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 21/85 (24%), Positives = 41/85 (48%), Gaps = 5/85 (5%)
Query: 485 RGSDMFQGFCIDVFTAAVNLLPYAVPYQFVAFGDGHKNPSYTQLVDSITTGVFDAVVGDI 544
R + G+ +D+ + + + Q N SYT LV ++ G +D +GDI
Sbjct: 32 RNTTKLTGYVLDLIEYLRDKMGFVADVQLAP-----PNTSYTGLVLALANGDYDIAIGDI 86
Query: 545 TIVTNRTKIVDFSQPYAASGLVVVV 569
T+ + R +IV FS + + + +++
Sbjct: 87 TVTSARREIVAFSNSISDNSMRILM 111
>pdb|3OLZ|A Chain A, Crystal Structure Of The Gluk3 (Glur7) Atd Dimer At 2.75
Angstrom Resolution
pdb|3OLZ|B Chain B, Crystal Structure Of The Gluk3 (Glur7) Atd Dimer At 2.75
Angstrom Resolution
Length = 398
Score = 48.5 bits (114), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 84/400 (21%), Positives = 153/400 (38%), Gaps = 24/400 (6%)
Query: 29 PAVVNVGALFTL----DSTIGRVAKIAIEEAVKDVNSNSSILHGTKLNITMQSSN-CSGF 83
P V+ +G +F ++ + + A + +N N ++L T L +Q + F
Sbjct: 2 PHVIRIGGIFEYADGPNAQVMNAEEHAFRFSANIINRNRTLLPNTTLTYDIQRIHFHDSF 61
Query: 84 IGMVEALRFMETDIVAIIGPQCSTVAHIVSYVSNELQVPLLSFGVTDPTLSSLQYPFFVR 143
+A + +VAI GP + + V + N L+VP + L + + F+V
Sbjct: 62 EATKKACDQLALGVVAIFGPSQGSCTNAVQSICNALEVPHIQLRWKHHPLDN-KDTFYVN 120
Query: 144 TTQSDSYQMTAVAEMVSYYGWNAVSVIFVDNEYGRNGVSALNDK-LAERRCRISYKSGIP 202
+ A+ ++V W + +V++ D+ G+ L + +A R I K
Sbjct: 121 LYPDYASLSHAILDLVQSLKWRSATVVYDDS----TGLIRLQELIMAPSRYNIRLKIRQL 176
Query: 203 PESGVNTGYVMDLLVKVALMESRVIVLHVSPSLGFQVFSVAKYLGMMGNGYVWIATDWLA 262
P +++ LL ++ I+ S ++ Q+ A +GMM Y +I T
Sbjct: 177 P---IDSDDSRPLLKEMKRGREFRIIFDCSHTMAAQILKQAMAMGMMTEYYHFIFTTLDL 233
Query: 263 YMLDSASLPSETLESMQGVLVLRQHIPESDRKKNFLSRWKNLTGGSLGMNSYGLYAYDSV 322
Y LD + ++ G +L P + +W + GL D V
Sbjct: 234 YALDLEPYRYSGV-NLTGFRILNVDNPHV---SAIVEKWSMERLQAAPRAESGL--LDGV 287
Query: 323 WLLAHAIESFFNQGGKISFSNDSRLKTMEGGNLHLGAMSIFDDGMLLLGNILQSNLVGLT 382
+ A+ ++ +S R M +L + G + I ++ GLT
Sbjct: 288 MMTDAAL--LYDAVHIVSVCY-QRAPQMTVNSLQCHRHKAWRFGGRFMNFIKEAQWEGLT 344
Query: 383 GPLKFNSDRSL-IHAAYDIINVIGTGFRMIGYWSNYSGLS 421
G + FN L DII++ G +G WS GL+
Sbjct: 345 GRIVFNKTSGLRTDFDLDIISLKEDGLEKVGVWSPADGLN 384
>pdb|2LBP|A Chain A, Structure Of The L-Leucine-Binding Protein Refined At 2.4
Angstroms Resolution And Comparison With The Leu(Slash)
Ile(Slash)val-Binding Protein Structure
Length = 346
Score = 48.5 bits (114), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 37/150 (24%), Positives = 63/150 (42%), Gaps = 2/150 (1%)
Query: 53 EEAVKDVNSNSSILHGTKLNITMQSSNCSGFIGMVEALRFMETDIVAIIGPQCSTVAHIV 112
E+A+KD+N+ I G KL C + A + + I +IG CS+
Sbjct: 27 EQAIKDINAKGGI-KGDKLVGVEYDDACDPKQAVAVANKIVNDGIKYVIGHLCSSSTQPA 85
Query: 113 SYVSNELQVPLLSFGVTDPTLSSLQYPFFVRTTQSDSYQM-TAVAEMVSYYGWNAVSVIF 171
S + + + ++S G T P L+ Y +RT DS Q TA ++ +++I
Sbjct: 86 SDIYEDEGILMISPGATAPELTQRGYQHIMRTAGLDSSQGPTAAKYILETVKPQRIAIIH 145
Query: 172 VDNEYGRNGVSALNDKLAERRCRISYKSGI 201
+YG ++ D L + + GI
Sbjct: 146 DKQQYGEGLARSVQDGLKAANANVVFFDGI 175
>pdb|2RCA|B Chain B, Crystal Structure Of The Nr3b Ligand Binding Core Complex
With Glycine At 1.58 Angstrom Resolution
pdb|2RCB|A Chain A, Crystal Structure Of The Nr3b Ligand Binding Core Complex
With D- Serine At 1.62 Angstrom Resolution
pdb|2RCB|B Chain B, Crystal Structure Of The Nr3b Ligand Binding Core Complex
With D- Serine At 1.62 Angstrom Resolution
pdb|2RCA|A Chain A, Crystal Structure Of The Nr3b Ligand Binding Core Complex
With Glycine At 1.58 Angstrom Resolution
Length = 292
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 38/149 (25%), Positives = 65/149 (43%), Gaps = 12/149 (8%)
Query: 681 LTVQQLYSPINGIESLRKSDDPIGYQEG----SFAEYYLSQ---ELNISKSRLVALRTPE 733
+ V+ + ++GI + G++ G S AE Y+ E++ R A TP
Sbjct: 145 IMVRTRGTELSGIHDPKLHHPSQGFRFGTVWESSAEAYIKASFPEMHAHMRRHSAPTTPH 204
Query: 734 DYAKALKDGPGKGGVAAVVDERPYV--ELFLSSQCSFRIVGQEFTKSGWGFAFPRDSPLA 791
A D P + A + ++ + E+ + + C VG+ F G+G P++SPL
Sbjct: 205 GVAMLTSDPPK---LNAFIMDKSLLDYEVSIDADCKLLTVGKPFAIEGYGIGLPQNSPLT 261
Query: 792 VDLSSAILELAENGDLQRIHDKWLMKSSC 820
+LS I +G + +HDKW C
Sbjct: 262 SNLSEFISRYKSSGFIDLLHDKWYKMVPC 290
>pdb|2RC7|A Chain A, Crystal Structure Of The Nr3a Ligand Binding Core Complex
With Glycine At 1.58 Angstrom Resolution
pdb|2RC8|A Chain A, Crystal Structure Of The Nr3a Ligand Binding Core Complex
With D- Serine At 1.45 Angstrom Resolution
pdb|2RC8|B Chain B, Crystal Structure Of The Nr3a Ligand Binding Core Complex
With D- Serine At 1.45 Angstrom Resolution
pdb|2RC9|A Chain A, Crystal Structure Of The Nr3a Ligand Binding Core Complex
With Acpc At 1.96 Angstrom Resolution
pdb|2RC9|B Chain B, Crystal Structure Of The Nr3a Ligand Binding Core Complex
With Acpc At 1.96 Angstrom Resolution
pdb|2RC7|B Chain B, Crystal Structure Of The Nr3a Ligand Binding Core Complex
With Glycine At 1.58 Angstrom Resolution
Length = 294
Score = 47.8 bits (112), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 34/117 (29%), Positives = 56/117 (47%), Gaps = 8/117 (6%)
Query: 709 SFAEYYLSQ---ELNISKSRLVALRTPEDYAKALKDGPGKGGVAAVVDERPYV--ELFLS 763
S AE Y+ Q E++ R TP D + LK+ P K + A + ++ + E+ +
Sbjct: 179 SSAEDYVRQSFPEMHEYMRRYNVPATP-DGVQYLKNDPEK--LDAFIMDKALLDYEVSID 235
Query: 764 SQCSFRIVGQEFTKSGWGFAFPRDSPLAVDLSSAILELAENGDLQRIHDKWLMKSSC 820
+ C VG+ F G+G P +SPL ++S I + +G + +HDKW C
Sbjct: 236 ADCKLLTVGKPFAIEGYGIGLPPNSPLTSNISELISQYKSHGFMDVLHDKWYKVVPC 292
>pdb|1USG|A Chain A, L-Leucine-Binding Protein, Apo Form
pdb|1USK|A Chain A, L-Leucine-Binding Protein With Leucine Bound
pdb|1USK|B Chain B, L-Leucine-Binding Protein With Leucine Bound
pdb|1USK|C Chain C, L-Leucine-Binding Protein With Leucine Bound
pdb|1USK|D Chain D, L-Leucine-Binding Protein With Leucine Bound
pdb|1USI|A Chain A, L-Leucine-Binding Protein With Phenylalanine Bound
pdb|1USI|C Chain C, L-Leucine-Binding Protein With Phenylalanine Bound
Length = 346
Score = 47.8 bits (112), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 36/149 (24%), Positives = 63/149 (42%), Gaps = 2/149 (1%)
Query: 54 EAVKDVNSNSSILHGTKLNITMQSSNCSGFIGMVEALRFMETDIVAIIGPQCSTVAHIVS 113
+A+KD+N+ I G KL C + A + + I +IG CS+ S
Sbjct: 28 QAIKDINAKGGI-KGDKLVGVEYDDACDPKQAVAVANKIVNDGIKYVIGHLCSSSTQPAS 86
Query: 114 YVSNELQVPLLSFGVTDPTLSSLQYPFFVRTTQSDSYQM-TAVAEMVSYYGWNAVSVIFV 172
+ + + ++S G T+P L+ Y +RT DS Q TA ++ +++I
Sbjct: 87 DIYEDEGILMISPGATNPELTQRGYQHIMRTAGLDSSQGPTAAKYILETVKPQRIAIIHD 146
Query: 173 DNEYGRNGVSALNDKLAERRCRISYKSGI 201
+YG ++ D L + + GI
Sbjct: 147 KQQYGEGLARSVQDGLKAANANVVFFDGI 175
>pdb|3U92|A Chain A, Crystal Structure Of The Gluk3 Ligand Binding Domain
Complex With Kainate And Zinc: P2221 Form
pdb|3U92|B Chain B, Crystal Structure Of The Gluk3 Ligand Binding Domain
Complex With Kainate And Zinc: P2221 Form
pdb|3U93|A Chain A, Crystal Structure Of The Gluk3 Ligand Binding Domain
Complex With Glutamate And Zinc: P2221 Form
pdb|3U93|B Chain B, Crystal Structure Of The Gluk3 Ligand Binding Domain
Complex With Glutamate And Zinc: P2221 Form
pdb|3U94|A Chain A, Crystal Structure Of The Gluk3 Ligand Binding Domain
Complex With Glutamate And Zinc: P21212 Form
pdb|3U94|B Chain B, Crystal Structure Of The Gluk3 Ligand Binding Domain
Complex With Glutamate And Zinc: P21212 Form
pdb|3U94|C Chain C, Crystal Structure Of The Gluk3 Ligand Binding Domain
Complex With Glutamate And Zinc: P21212 Form
pdb|3U94|D Chain D, Crystal Structure Of The Gluk3 Ligand Binding Domain
Complex With Glutamate And Zinc: P21212 Form
Length = 257
Score = 46.2 bits (108), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 25/100 (25%), Positives = 49/100 (49%), Gaps = 5/100 (5%)
Query: 477 YREFVSKVRGSDMFQGFCIDVFTAAVNLLPYAVPYQFV---AFGDGHKNPSYTQLVDSIT 533
+R+ + G+D F+G+CID+ ++L ++ + V +G + +V +
Sbjct: 19 FRKSDRTLYGNDRFEGYCIDLLKELAHILGFSYEIRLVEDGKYGAQDDKGQWNGMVKELI 78
Query: 534 TGVFDAVVGDITIVTNRTKIVDFSQPYAASGLVVVVPFRK 573
D V +TI R K +DFS+P+ G+ ++ +RK
Sbjct: 79 DHKADLAVAPLTITHVREKAIDFSKPFMTLGVSIL--YRK 116
Score = 39.7 bits (91), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 31/71 (43%)
Query: 750 AVVDERPYVELFLSSQCSFRIVGQEFTKSGWGFAFPRDSPLAVDLSSAILELAENGDLQR 809
A++ E +E C+ +G G+G P SP ++ AIL+L E L
Sbjct: 185 ALLMESTTIEYITQRNCNLTQIGGLIDSKGYGIGTPMGSPYRDKITIAILQLQEEDKLHI 244
Query: 810 IHDKWLMKSSC 820
+ +KW S C
Sbjct: 245 MKEKWWRGSGC 255
>pdb|3S9E|A Chain A, Crystal Structure Of The Kainate Receptor Gluk3 Ligand
Binding Domain In Complex With (S)-Glutamate
pdb|3S9E|B Chain B, Crystal Structure Of The Kainate Receptor Gluk3 Ligand
Binding Domain In Complex With (S)-Glutamate
pdb|4E0W|A Chain A, Crystal Structure Of The Kainate Receptor Gluk3 Ligand
Binding Domain In Complex With Kainate
pdb|4G8N|A Chain A, Crystal Structure Of The Kainate Receptor Gluk3
Ligand-Binding Domain In Complex With The Agonist G8m
Length = 258
Score = 46.2 bits (108), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 25/100 (25%), Positives = 49/100 (49%), Gaps = 5/100 (5%)
Query: 477 YREFVSKVRGSDMFQGFCIDVFTAAVNLLPYAVPYQFV---AFGDGHKNPSYTQLVDSIT 533
+R+ + G+D F+G+CID+ ++L ++ + V +G + +V +
Sbjct: 21 FRKSDRTLYGNDRFEGYCIDLLKELAHILGFSYEIRLVEDGKYGAQDDKGQWNGMVKELI 80
Query: 534 TGVFDAVVGDITIVTNRTKIVDFSQPYAASGLVVVVPFRK 573
D V +TI R K +DFS+P+ G+ ++ +RK
Sbjct: 81 DHKADLAVAPLTITHVREKAIDFSKPFMTLGVSIL--YRK 118
Score = 39.7 bits (91), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 31/71 (43%)
Query: 750 AVVDERPYVELFLSSQCSFRIVGQEFTKSGWGFAFPRDSPLAVDLSSAILELAENGDLQR 809
A++ E +E C+ +G G+G P SP ++ AIL+L E L
Sbjct: 187 ALLMESTTIEYITQRNCNLTQIGGLIDSKGYGIGTPMGSPYRDKITIAILQLQEEDKLHI 246
Query: 810 IHDKWLMKSSC 820
+ +KW S C
Sbjct: 247 MKEKWWRGSGC 257
>pdb|1YAE|A Chain A, Structure Of The Kainate Receptor Subunit Glur6 Agonist
Binding Domain Complexed With Domoic Acid
pdb|1YAE|B Chain B, Structure Of The Kainate Receptor Subunit Glur6 Agonist
Binding Domain Complexed With Domoic Acid
pdb|1YAE|C Chain C, Structure Of The Kainate Receptor Subunit Glur6 Agonist
Binding Domain Complexed With Domoic Acid
pdb|1YAE|D Chain D, Structure Of The Kainate Receptor Subunit Glur6 Agonist
Binding Domain Complexed With Domoic Acid
pdb|1YAE|E Chain E, Structure Of The Kainate Receptor Subunit Glur6 Agonist
Binding Domain Complexed With Domoic Acid
pdb|1YAE|F Chain F, Structure Of The Kainate Receptor Subunit Glur6 Agonist
Binding Domain Complexed With Domoic Acid
Length = 312
Score = 45.8 bits (107), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/104 (26%), Positives = 49/104 (47%), Gaps = 9/104 (8%)
Query: 486 GSDMFQGFCIDVFTAAVNLLPYAVPYQFVAFG----DGHKNPSYTQLVDSITTGVFDAVV 541
G+D F+G+CID+ +L + + V G N + +V + D V
Sbjct: 37 GNDRFEGYCIDLLRELSTILGFTYEIRLVEDGKYGAQDDVNGQWNGMVRELIDHKADLAV 96
Query: 542 GDITIVTNRTKIVDFSQPYAASGLVVVVPFRK---LNTGAWAFL 582
+ I R K++DFS+P+ G+ ++ +RK N G ++FL
Sbjct: 97 APLAITYVREKVIDFSKPFMTLGISIL--YRKPNGTNPGVFSFL 138
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 34/77 (44%)
Query: 750 AVVDERPYVELFLSSQCSFRIVGQEFTKSGWGFAFPRDSPLAVDLSSAILELAENGDLQR 809
A + E +E C+ +G G+G P SP ++ AIL+L E G L
Sbjct: 221 AFLMESTTIEFVTQRNCNLTQIGGLIDSKGYGVGTPMGSPYRDKITIAILQLQEEGKLHM 280
Query: 810 IHDKWLMKSSCSLENAE 826
+ +KW + C E ++
Sbjct: 281 MKEKWWRGNGCPEEESK 297
>pdb|4F2O|A Chain A, Quisqualate Bound To The D655a Mutant Of The Ligand
Binding Domain Of Glua3
pdb|4F2Q|A Chain A, Quisqualate Bound To The D655a Mutant Of The Ligand
Binding Domain Of Glua3
pdb|4F31|B Chain B, Kainate Bound To The D655a Mutant Of The Ligand Binding
Domain Of Glua3
pdb|4F31|D Chain D, Kainate Bound To The D655a Mutant Of The Ligand Binding
Domain Of Glua3
pdb|4F3B|A Chain A, Glutamate Bound To The D655a Mutant Of The Ligand Binding
Domain Of Glua3
Length = 258
Score = 45.4 bits (106), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/100 (23%), Positives = 54/100 (54%), Gaps = 10/100 (10%)
Query: 477 YREFVSKVRGSDMFQGFCIDVFTAAVNLLPYA-VPYQFVAFGDGH---KNPS---YTQLV 529
Y++ ++ G++ ++G+C+D+ A + + + Y+ GDG ++P + +V
Sbjct: 16 YKKNHEQLEGNERYEGYCVDL---AYEIAKHVRIKYKLSIVGDGKYGARDPETKIWNGMV 72
Query: 530 DSITTGVFDAVVGDITIVTNRTKIVDFSQPYAASGLVVVV 569
+ G D V +TI R +++DFS+P+ + G+ +++
Sbjct: 73 GELVYGRADIAVAPLTITLVREEVIDFSKPFMSLGISIMI 112
Score = 39.7 bits (91), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 34/137 (24%), Positives = 59/137 (43%), Gaps = 11/137 (8%)
Query: 688 SPINGIESLRKSDDPIGY---QEGSFAEYYLSQELNISKSRLVALRT--PEDYAKALKDG 742
+PI E L K + I Y GS E++ ++ + + +++ P + K DG
Sbjct: 116 TPIESAEDLAKQTE-IAYGTLASGSTKEFFRRSKIAVYEKMWSYMKSAEPSVFTKTTADG 174
Query: 743 -----PGKGGVAAVVDERPYVELFLSSQCSFRIVGQEFTKSGWGFAFPRDSPLAVDLSSA 797
KG A +++ + C VG G+G A P+ S L ++ A
Sbjct: 175 VARVRKSKGKFAFLLESTMNEYIEQRKPCDTMKVGGNLDSKGYGVATPKGSALGNAVNLA 234
Query: 798 ILELAENGDLQRIHDKW 814
+L+L E G L ++ +KW
Sbjct: 235 VLKLNEQGLLDKLKNKW 251
>pdb|3M3F|A Chain A, Pepa Bound To The Ligand Binding Domain Of Glua3 (Flop
Form)
pdb|3M3K|A Chain A, Ligand Binding Domain (S1s2) Of Glua3 (Flop)
pdb|3M3K|C Chain C, Ligand Binding Domain (S1s2) Of Glua3 (Flop)
pdb|3M3K|E Chain E, Ligand Binding Domain (S1s2) Of Glua3 (Flop)
pdb|4F1Y|A Chain A, Cnqx Bound To The Ligand Binding Domain Of Glua3
pdb|4F1Y|C Chain C, Cnqx Bound To The Ligand Binding Domain Of Glua3
Length = 258
Score = 45.1 bits (105), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/100 (23%), Positives = 54/100 (54%), Gaps = 10/100 (10%)
Query: 477 YREFVSKVRGSDMFQGFCIDVFTAAVNLLPYA-VPYQFVAFGDGH---KNPS---YTQLV 529
Y++ ++ G++ ++G+C+D+ A + + + Y+ GDG ++P + +V
Sbjct: 16 YKKNHEQLEGNERYEGYCVDL---AYEIAKHVRIKYKLSIVGDGKYGARDPETKIWNGMV 72
Query: 530 DSITTGVFDAVVGDITIVTNRTKIVDFSQPYAASGLVVVV 569
+ G D V +TI R +++DFS+P+ + G+ +++
Sbjct: 73 GELVYGRADIAVAPLTITLVREEVIDFSKPFMSLGISIMI 112
Score = 40.0 bits (92), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 34/137 (24%), Positives = 59/137 (43%), Gaps = 11/137 (8%)
Query: 688 SPINGIESLRKSDDPIGY---QEGSFAEYYLSQELNISKSRLVALRT--PEDYAKALKDG 742
+PI E L K + I Y GS E++ ++ + + +++ P + K DG
Sbjct: 116 TPIESAEDLAKQTE-IAYGTLDSGSTKEFFRRSKIAVYEKMWSYMKSAEPSVFTKTTADG 174
Query: 743 -----PGKGGVAAVVDERPYVELFLSSQCSFRIVGQEFTKSGWGFAFPRDSPLAVDLSSA 797
KG A +++ + C VG G+G A P+ S L ++ A
Sbjct: 175 VARVRKSKGKFAFLLESTMNEYIEQRKPCDTMKVGGNLDSKGYGVATPKGSALGNAVNLA 234
Query: 798 ILELAENGDLQRIHDKW 814
+L+L E G L ++ +KW
Sbjct: 235 VLKLNEQGLLDKLKNKW 251
>pdb|3LSW|A Chain A, Aniracetam Bound To The Ligand Binding Domain Of Glua3
pdb|3LSX|A Chain A, Piracetam Bound To The Ligand Binding Domain Of Glua3
pdb|3RT6|B Chain B, Fluorowillardiine Bound To The Ligand Binding Domain Of
Glua3
pdb|3RT8|A Chain A, Chlorowillardiine Bound To The Ligand Binding Domain Of
Glua3
pdb|4F29|A Chain A, Quisqualate Bound To The Ligand Binding Domain Of Glua3i
pdb|4F39|A Chain A, Kainate Bound To The Ligand Binding Domain Of Glua3
pdb|4F3G|A Chain A, Kainate Bound To The Ligand Binding Domain Of Glua3i
Length = 258
Score = 45.1 bits (105), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/100 (23%), Positives = 54/100 (54%), Gaps = 10/100 (10%)
Query: 477 YREFVSKVRGSDMFQGFCIDVFTAAVNLLPYA-VPYQFVAFGDGH---KNPS---YTQLV 529
Y++ ++ G++ ++G+C+D+ A + + + Y+ GDG ++P + +V
Sbjct: 16 YKKNHEQLEGNERYEGYCVDL---AYEIAKHVRIKYKLSIVGDGKYGARDPETKIWNGMV 72
Query: 530 DSITTGVFDAVVGDITIVTNRTKIVDFSQPYAASGLVVVV 569
+ G D V +TI R +++DFS+P+ + G+ +++
Sbjct: 73 GELVYGRADIAVAPLTITLVREEVIDFSKPFMSLGISIMI 112
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 34/137 (24%), Positives = 60/137 (43%), Gaps = 11/137 (8%)
Query: 688 SPINGIESLRKSDDPIGY---QEGSFAEYYLSQELNISKSRLVALRT--PEDYAKALKDG 742
+PI E L K + I Y GS E++ ++ + + +++ P + K DG
Sbjct: 116 TPIESAEDLAKQTE-IAYGTLDSGSTKEFFRRSKIAVYEKMWSYMKSAEPSVFTKTTADG 174
Query: 743 -----PGKGGVAAVVDERPYVELFLSSQCSFRIVGQEFTKSGWGFAFPRDSPLAVDLSSA 797
KG A +++ + C VG G+G A P+ S L ++ A
Sbjct: 175 VARVRKSKGKFAFLLESTMNEYIEQRKPCDTMKVGGNLDSKGYGVATPKGSALGTPVNLA 234
Query: 798 ILELAENGDLQRIHDKW 814
+L+L+E G L ++ +KW
Sbjct: 235 VLKLSEQGILDKLKNKW 251
>pdb|3DP4|A Chain A, Crystal Structure Of The Binding Domain Of The Ampa
Subunit Glur3 Bound To Ampa
pdb|3DLN|A Chain A, Crystal Structure Of The Binding Domain Of The Ampa
Subunit Glur3 Bound To Glutamate
Length = 278
Score = 45.1 bits (105), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/99 (22%), Positives = 52/99 (52%), Gaps = 8/99 (8%)
Query: 477 YREFVSKVRGSDMFQGFCIDVFTAAVNLLPYAVPYQFVAFGDGH---KNPS---YTQLVD 530
Y++ ++ G++ ++G+C+D+ + + Y+ GDG ++P + +V
Sbjct: 35 YKKNHEQLEGNERYEGYCVDLAYEIAKHV--RIKYKLSIVGDGKYGARDPETKIWNGMVG 92
Query: 531 SITTGVFDAVVGDITIVTNRTKIVDFSQPYAASGLVVVV 569
+ G D V +TI R +++DFS+P+ + G+ +++
Sbjct: 93 ELVYGRADIAVAPLTITLVREEVIDFSKPFMSLGISIMI 131
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 34/137 (24%), Positives = 60/137 (43%), Gaps = 11/137 (8%)
Query: 688 SPINGIESLRKSDDPIGY---QEGSFAEYYLSQELNISKSRLVALRT--PEDYAKALKDG 742
+PI E L K + I Y GS E++ ++ + + +++ P + K DG
Sbjct: 135 TPIESAEDLAKQTE-IAYGTLDSGSTKEFFRRSKIAVYEKMWSYMKSAEPSVFTKTTADG 193
Query: 743 -----PGKGGVAAVVDERPYVELFLSSQCSFRIVGQEFTKSGWGFAFPRDSPLAVDLSSA 797
KG A +++ + C VG G+G A P+ S L ++ A
Sbjct: 194 VARVRKSKGKFAFLLESTMNEYIEQRKPCDTMKVGGNLDSKGYGVATPKGSALGTPVNLA 253
Query: 798 ILELAENGDLQRIHDKW 814
+L+L+E G L ++ +KW
Sbjct: 254 VLKLSEQGILDKLKNKW 270
>pdb|4F22|A Chain A, Kainate Bound To The K660a Mutant Of The Ligand Binding
Domain Of Glua3
Length = 258
Score = 45.1 bits (105), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/100 (23%), Positives = 54/100 (54%), Gaps = 10/100 (10%)
Query: 477 YREFVSKVRGSDMFQGFCIDVFTAAVNLLPYA-VPYQFVAFGDGH---KNPS---YTQLV 529
Y++ ++ G++ ++G+C+D+ A + + + Y+ GDG ++P + +V
Sbjct: 16 YKKNHEQLEGNERYEGYCVDL---AYEIAKHVRIKYKLSIVGDGKYGARDPETKIWNGMV 72
Query: 530 DSITTGVFDAVVGDITIVTNRTKIVDFSQPYAASGLVVVV 569
+ G D V +TI R +++DFS+P+ + G+ +++
Sbjct: 73 GELVYGRADIAVAPLTITLVREEVIDFSKPFMSLGISIMI 112
Score = 44.3 bits (103), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 35/137 (25%), Positives = 61/137 (44%), Gaps = 11/137 (8%)
Query: 688 SPINGIESLRKSDDPIGY---QEGSFAEYYLSQELNISKSRLVALRT--PEDYAKALKDG 742
+PI E L K + I Y GS AE++ ++ + + +++ P + K DG
Sbjct: 116 TPIESAEDLAKQTE-IAYGTLDSGSTAEFFRRSKIAVYEKMWSYMKSAEPSVFTKTTADG 174
Query: 743 -----PGKGGVAAVVDERPYVELFLSSQCSFRIVGQEFTKSGWGFAFPRDSPLAVDLSSA 797
KG A +++ + C VG G+G A P+ S L ++ A
Sbjct: 175 VARVRKSKGKFAFLLESTMNEYIEQRKPCDTMKVGGNLDSKGYGVATPKGSALGTPVNLA 234
Query: 798 ILELAENGDLQRIHDKW 814
+L+L+E G L ++ +KW
Sbjct: 235 VLKLSEQGILDKLKNKW 251
>pdb|1DP4|A Chain A, Dimerized Hormone Binding Domain Of The Atrial Natriuretic
Peptide Receptor
pdb|1DP4|C Chain C, Dimerized Hormone Binding Domain Of The Atrial Natriuretic
Peptide Receptor
pdb|1T34|A Chain A, Rotation Mechanism For Transmembrane Signaling By The
Atrial Natriuretic Peptide Receptor
pdb|1T34|B Chain B, Rotation Mechanism For Transmembrane Signaling By The
Atrial Natriuretic Peptide Receptor
pdb|3A3K|A Chain A, Reversibly Bound Chloride In The Atrial Natriuretic
Peptide Receptor Hormone-Binding Domain
pdb|3A3K|B Chain B, Reversibly Bound Chloride In The Atrial Natriuretic
Peptide Receptor Hormone-Binding Domain
Length = 435
Score = 43.9 bits (102), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 87/410 (21%), Positives = 146/410 (35%), Gaps = 72/410 (17%)
Query: 51 AIEEAVKDVNSNSSILHGTKLNITMQSSN-----CSGFIGMVEALRFM-ETDIVAIIGPQ 104
A+E A+ V + +L G + + + SS CS + A+ E +GP
Sbjct: 26 AVELALARVKARPDLLPGWTVRMVLGSSENAAGVCSDTAAPLAAVDLKWEHSPAVFLGPG 85
Query: 105 CSTVAHIVSYVSNELQVPLLSFGVTDPTLS---SLQYPFFVRTTQSDSYQMTAVAEMVSY 161
C A V + +VPLL+ G P L +Y RT S V +
Sbjct: 86 CVYSAAPVGRFTAHWRVPLLTAGA--PALGIGVKDEYALTTRTGPSHVKLGDFVTALHRR 143
Query: 162 YGWNAVSVIFVDNEYGRNG-----VSALNDKLAER-RCRISYKSGIPPESGVNTGYVMDL 215
GW +++ + G + V L ++ ER ++++ + G Y
Sbjct: 144 LGWEHQALVLYADRLGDDRPCFFIVEGLYMRVRERLNITVNHQEFV---EGDPDHYPK-- 198
Query: 216 LVKVALMESRVIVLHVSPSLGFQVFSVAKYLGMMGNGYVWIATDWLAYMLDSAS--LPSE 273
L++ + RVI + SP + +A G+ G YV+ D L SA +P +
Sbjct: 199 LLRAVRRKGRVIYICSSPDAFRNLMLLALNAGLTGEDYVFFHLDVFGQSLKSAQGLVPQK 258
Query: 274 TLE-----------SMQGVLVLRQHIPESDRKKNFLSRWKNLTGGSLGM-------NSYG 315
E + Q ++ P++ FL + K L N
Sbjct: 259 PWERGDGQDRSARQAFQAAKIITYKEPDNPEYLEFLKQLKLLADKKFNFTVEDGLKNIIP 318
Query: 316 LYAYDSVWLLAHAIESFFNQGGKISFSNDSRLKTMEGGNLHLGAMSIFDDGMLLLGNILQ 375
+D + L A+ QGG ++ DG + +
Sbjct: 319 ASFHDGLLLYVQAVTETLAQGGTVT------------------------DGENITQRMWN 354
Query: 376 SNLVGLTGPLKF--NSDRSLIHAAYDIINVIGTGFRMIGYWSNYSGLSKE 423
+ G+TG LK N DR + +D+ G FR++ NY+G S+E
Sbjct: 355 RSFQGVTGYLKIDRNGDRDTDFSLWDMDPETG-AFRVV---LNYNGTSQE 400
>pdb|3QXM|A Chain A, Crystal Structure Of Human Gluk2 Ligand-Binding Core In
Complex With Novel Marine-Derived Toxins,
Neodysiherbaine A
pdb|3QXM|B Chain B, Crystal Structure Of Human Gluk2 Ligand-Binding Core In
Complex With Novel Marine-Derived Toxins,
Neodysiherbaine A
Length = 258
Score = 43.5 bits (101), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 24/92 (26%), Positives = 43/92 (46%), Gaps = 6/92 (6%)
Query: 486 GSDMFQGFCIDVFTAAVNLLPYAVPYQFVAFG----DGHKNPSYTQLVDSITTGVFDAVV 541
G+D F+G+CID+ +L + + V G N + +V + D V
Sbjct: 27 GNDRFEGYCIDLLRELSTILGFTYEIRLVEDGKYGAQDDANGQWNGMVRELIDHKADLAV 86
Query: 542 GDITIVTNRTKIVDFSQPYAASGLVVVVPFRK 573
+ I R K++DFS+P+ G+ ++ +RK
Sbjct: 87 APLAITYVREKVIDFSKPFMTLGISIL--YRK 116
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 31/71 (43%)
Query: 750 AVVDERPYVELFLSSQCSFRIVGQEFTKSGWGFAFPRDSPLAVDLSSAILELAENGDLQR 809
A + E +E C+ +G G+G P SP ++ AIL+L E G L
Sbjct: 186 AFLMESTTIEFVTQRNCNLTQIGGLIDSKGYGVGTPMGSPYRDKITIAILQLQEEGKLHM 245
Query: 810 IHDKWLMKSSC 820
+ +KW + C
Sbjct: 246 MKEKWWRGNGC 256
>pdb|3H5V|A Chain A, Crystal Structure Of The Glur2-atd
pdb|3H5V|B Chain B, Crystal Structure Of The Glur2-atd
pdb|3H5V|C Chain C, Crystal Structure Of The Glur2-atd
pdb|3H5W|A Chain A, Crystal Structure Of The Glur2-Atd In Space Group P212121
Without Solvent
pdb|3H5W|B Chain B, Crystal Structure Of The Glur2-Atd In Space Group P212121
Without Solvent
Length = 394
Score = 43.1 bits (100), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 55/284 (19%), Positives = 107/284 (37%), Gaps = 50/284 (17%)
Query: 154 AVAEMVSYYGWNAVSVIFVDNEYGRNGVSALNDKLAERRCRISYKSGIPPESGVNTGYVM 213
A+ ++ YY W+ + ++ D++ G + + A+ D AE++ +++ +N G +
Sbjct: 119 ALLSLIEYYQWDKFAYLY-DSDRGLSTLQAVLDSAAEKKWQVT---------AINVGNIN 168
Query: 214 D---------LLVKVALMESRVIVLHVSPSLGFQVFSVAKYLGMMGNGYVWIAT------ 258
+ L + L + R ++L + +G GY +I
Sbjct: 169 NDKKDETYRSLFQDLELKKERRVILDCERDKVNDIVDQVITIGKHVKGYHYIIANLGFTD 228
Query: 259 -DWLAYMLDSASLPSETLESMQGVLVLRQHIPESDRKKNFLSRWKNLT-----GGSLGMN 312
D L A++ + LV + F+ RW L G
Sbjct: 229 GDLLKIQFGGANVSGFQIVDYDDSLVSK-----------FIERWSTLEEKEYPGAHTATI 277
Query: 313 SY-GLYAYDSVWLLAHAIESFFNQGGKISFSNDSRLKTMEGGNLHLGAMSIFDDGMLLLG 371
Y YD+V ++ A + Q +IS + G+ + G+ +
Sbjct: 278 KYTSALTYDAVQVMTEAFRNLRKQRIEIS-------RRGNAGDCLANPAVPWGQGVEIER 330
Query: 372 NILQSNLVGLTGPLKFNSDRSLIHAAYDIINVIGTGFRMIGYWS 415
+ Q + GL+G +KF+ + I+ +I+ + G R IGYWS
Sbjct: 331 ALKQVQVEGLSGNIKFDQNGKRINYTINIMELKTNGPRKIGYWS 374
>pdb|1YK0|A Chain A, Structure Of Natriuretic Peptide Receptor-c Complexed With
Atrial Natriuretic Peptide
pdb|1YK0|B Chain B, Structure Of Natriuretic Peptide Receptor-c Complexed With
Atrial Natriuretic Peptide
Length = 480
Score = 43.1 bits (100), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 36/166 (21%), Positives = 72/166 (43%), Gaps = 18/166 (10%)
Query: 29 PAVVNVGALFTLDST----IGRVAKIAIEEAVKDVNSNSS----ILHGTKLNITMQSSNC 80
P + V L D + + RV + AIE A++ V N + + GT+ + + S+C
Sbjct: 50 PQKIEVLVLLPQDDSYLFSLTRV-RPAIEYALRSVEGNGTGRRLLPPGTRFQVAYEDSDC 108
Query: 81 SG-----FIGMVEALRFMETDIVAIIGPQCSTVAHIVSYVSNELQVPLLSFGVTDPTLSS 135
+ V A R + D+ I+GP C A V+ +++ +P+LS G
Sbjct: 109 GNRALFSLVDRVAAARGAKPDL--ILGPVCEYAAAPVARLASHWDLPMLSAGALAAGFQH 166
Query: 136 L--QYPFFVRTTQSDSYQMTAVAEMVSYYGWNAVSVIFVDNEYGRN 179
+Y R + + + + ++ W+ ++++ D++ RN
Sbjct: 167 KDSEYSHLTRVAPAYAKMGEMMLALFRHHHWSRAALVYSDDKLERN 212
>pdb|1YK1|A Chain A, Structure Of Natriuretic Peptide Receptor-C Complexed With
Brain Natriuretic Peptide
pdb|1YK1|B Chain B, Structure Of Natriuretic Peptide Receptor-C Complexed With
Brain Natriuretic Peptide
Length = 479
Score = 43.1 bits (100), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 36/166 (21%), Positives = 72/166 (43%), Gaps = 18/166 (10%)
Query: 29 PAVVNVGALFTLDST----IGRVAKIAIEEAVKDVNSNSS----ILHGTKLNITMQSSNC 80
P + V L D + + RV + AIE A++ V N + + GT+ + + S+C
Sbjct: 49 PQKIEVLVLLPQDDSYLFSLTRV-RPAIEYALRSVEGNGTGRRLLPPGTRFQVAYEDSDC 107
Query: 81 SG-----FIGMVEALRFMETDIVAIIGPQCSTVAHIVSYVSNELQVPLLSFGVTDPTLSS 135
+ V A R + D+ I+GP C A V+ +++ +P+LS G
Sbjct: 108 GNRALFSLVDRVAAARGAKPDL--ILGPVCEYAAAPVARLASHWDLPMLSAGALAAGFQH 165
Query: 136 L--QYPFFVRTTQSDSYQMTAVAEMVSYYGWNAVSVIFVDNEYGRN 179
+Y R + + + + ++ W+ ++++ D++ RN
Sbjct: 166 KDSEYSHLTRVAPAYAKMGEMMLALFRHHHWSRAALVYSDDKLERN 211
>pdb|2I0C|A Chain A, Crystal Structure Of The Glur6 Ligand Binding Core Dimer
Crosslinked By Disulfide Bonds Between Y490c And L752c
At 2.25 Angstroms Resolution
pdb|2I0C|B Chain B, Crystal Structure Of The Glur6 Ligand Binding Core Dimer
Crosslinked By Disulfide Bonds Between Y490c And L752c
At 2.25 Angstroms Resolution
Length = 259
Score = 43.1 bits (100), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 24/92 (26%), Positives = 43/92 (46%), Gaps = 6/92 (6%)
Query: 486 GSDMFQGFCIDVFTAAVNLLPYAVPYQFVAFG----DGHKNPSYTQLVDSITTGVFDAVV 541
G+D F+G+CID+ +L + + V G N + +V + D V
Sbjct: 28 GNDRFEGYCIDLLRELSTILGFTYEIRLVEDGKYGAQDDVNGQWNGMVRELIDHKADLAV 87
Query: 542 GDITIVTNRTKIVDFSQPYAASGLVVVVPFRK 573
+ I R K++DFS+P+ G+ ++ +RK
Sbjct: 88 APLAITCVREKVIDFSKPFMTLGISIL--YRK 117
Score = 38.9 bits (89), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 19/71 (26%), Positives = 30/71 (42%)
Query: 750 AVVDERPYVELFLSSQCSFRIVGQEFTKSGWGFAFPRDSPLAVDLSSAILELAENGDLQR 809
A + E +E C+ +G G+G P SP ++ AI +L E G L
Sbjct: 187 AFLMESTTIEFVTQRNCNLTQIGGLIDSKGYGVGTPMGSPYRDKITIAICQLQEEGKLHM 246
Query: 810 IHDKWLMKSSC 820
+ +KW + C
Sbjct: 247 MKEKWWRGNGC 257
>pdb|3G3H|A Chain A, Crystal Structure Of The Glur6 Ligand Binding Domain Dimer
K665r I749l Q753k Mutant With Glutamate And Nacl At 1.5
Angstrom Resolution
pdb|3G3H|B Chain B, Crystal Structure Of The Glur6 Ligand Binding Domain Dimer
K665r I749l Q753k Mutant With Glutamate And Nacl At 1.5
Angstrom Resolution
Length = 259
Score = 42.7 bits (99), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 24/92 (26%), Positives = 43/92 (46%), Gaps = 6/92 (6%)
Query: 486 GSDMFQGFCIDVFTAAVNLLPYAVPYQFVAFG----DGHKNPSYTQLVDSITTGVFDAVV 541
G+D F+G+CID+ +L + + V G N + +V + D V
Sbjct: 28 GNDRFEGYCIDLLRELSTILGFTYEIRLVEDGKYGAQDDVNGQWNGMVRELIDHKADLAV 87
Query: 542 GDITIVTNRTKIVDFSQPYAASGLVVVVPFRK 573
+ I R K++DFS+P+ G+ ++ +RK
Sbjct: 88 APLAITYVREKVIDFSKPFMTLGISIL--YRK 117
Score = 40.4 bits (93), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 31/71 (43%)
Query: 750 AVVDERPYVELFLSSQCSFRIVGQEFTKSGWGFAFPRDSPLAVDLSSAILELAENGDLQR 809
A + E +E C+ +G G+G P SP ++ AIL+L E G L
Sbjct: 187 AFLMESTTIEFVTQRNCNLTQIGGLIDSKGYGVGTPMGSPYRDKITLAILKLQEEGKLHM 246
Query: 810 IHDKWLMKSSC 820
+ +KW + C
Sbjct: 247 MKEKWWRGNGC 257
>pdb|2XXW|A Chain A, Crystal Structure Of The Gluk2 (Glur6) D776k Lbd Dimer In
Complex With Glutamate
pdb|2XXW|B Chain B, Crystal Structure Of The Gluk2 (Glur6) D776k Lbd Dimer In
Complex With Glutamate
pdb|2XXX|A Chain A, Crystal Structure Of The Gluk2 (Glur6) D776k Lbd Dimer In
Complex With Glutamate (P21 21 21)
pdb|2XXX|B Chain B, Crystal Structure Of The Gluk2 (Glur6) D776k Lbd Dimer In
Complex With Glutamate (P21 21 21)
pdb|2XXX|C Chain C, Crystal Structure Of The Gluk2 (Glur6) D776k Lbd Dimer In
Complex With Glutamate (P21 21 21)
pdb|2XXX|D Chain D, Crystal Structure Of The Gluk2 (Glur6) D776k Lbd Dimer In
Complex With Glutamate (P21 21 21)
pdb|2XXY|A Chain A, Crystal Structure Of The Gluk2 (Glur6) D776k Lbd Dimer In
Complex With Kainate
pdb|2XXY|B Chain B, Crystal Structure Of The Gluk2 (Glur6) D776k Lbd Dimer In
Complex With Kainate
pdb|2XXY|C Chain C, Crystal Structure Of The Gluk2 (Glur6) D776k Lbd Dimer In
Complex With Kainate
pdb|2XXY|D Chain D, Crystal Structure Of The Gluk2 (Glur6) D776k Lbd Dimer In
Complex With Kainate
Length = 261
Score = 42.7 bits (99), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 24/92 (26%), Positives = 43/92 (46%), Gaps = 6/92 (6%)
Query: 486 GSDMFQGFCIDVFTAAVNLLPYAVPYQFVAFG----DGHKNPSYTQLVDSITTGVFDAVV 541
G+D F+G+CID+ +L + + V G N + +V + D V
Sbjct: 28 GNDRFEGYCIDLLRELSTILGFTYEIRLVEDGKYGAQDDVNGQWNGMVRELIDHKADLAV 87
Query: 542 GDITIVTNRTKIVDFSQPYAASGLVVVVPFRK 573
+ I R K++DFS+P+ G+ ++ +RK
Sbjct: 88 APLAITYVREKVIDFSKPFMTLGISIL--YRK 117
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 31/71 (43%)
Query: 750 AVVDERPYVELFLSSQCSFRIVGQEFTKSGWGFAFPRDSPLAVDLSSAILELAENGDLQR 809
A + E +E C+ +G G+G P SP ++ AIL+L E G L
Sbjct: 187 AFLMESTTIEFVTQRNCNLTQIGGLIDSKGYGVGTPMGSPYRKKITIAILQLQEEGKLHM 246
Query: 810 IHDKWLMKSSC 820
+ +KW + C
Sbjct: 247 MKEKWWRGNGC 257
>pdb|3O2J|A Chain A, Structure Of The Glua2 Ntd-Dimer Interface Mutant, N54a
pdb|3O2J|B Chain B, Structure Of The Glua2 Ntd-Dimer Interface Mutant, N54a
Length = 388
Score = 42.7 bits (99), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 55/284 (19%), Positives = 107/284 (37%), Gaps = 50/284 (17%)
Query: 154 AVAEMVSYYGWNAVSVIFVDNEYGRNGVSALNDKLAERRCRISYKSGIPPESGVNTGYVM 213
A+ ++ YY W+ + ++ D++ G + + A+ D AE++ +++ +N G +
Sbjct: 114 ALLSLIEYYQWDKFAYLY-DSDRGLSTLQAVLDSAAEKKWQVT---------AINVGNIN 163
Query: 214 D---------LLVKVALMESRVIVLHVSPSLGFQVFSVAKYLGMMGNGYVWIAT------ 258
+ L + L + R ++L + +G GY +I
Sbjct: 164 NDKKDETYRSLFQDLELKKERRVILDCERDKVNDIVDQVITIGKHVKGYHYIIANLGFTD 223
Query: 259 -DWLAYMLDSASLPSETLESMQGVLVLRQHIPESDRKKNFLSRWKNLT-----GGSLGMN 312
D L A++ + LV + F+ RW L G
Sbjct: 224 GDLLKIQFGGANVSGFQIVDYDDSLVSK-----------FIERWSTLEEKEYPGAHTATI 272
Query: 313 SY-GLYAYDSVWLLAHAIESFFNQGGKISFSNDSRLKTMEGGNLHLGAMSIFDDGMLLLG 371
Y YD+V ++ A + Q +IS + G+ + G+ +
Sbjct: 273 KYTSALTYDAVQVMTEAFRNLRKQRIEIS-------RRGNAGDCLANPAVPWGQGVEIER 325
Query: 372 NILQSNLVGLTGPLKFNSDRSLIHAAYDIINVIGTGFRMIGYWS 415
+ Q + GL+G +KF+ + I+ +I+ + G R IGYWS
Sbjct: 326 ALKQVQVEGLSGNIKFDQNGKRINYTINIMELKTNGPRKIGYWS 369
>pdb|2XXR|A Chain A, Crystal Structure Of The Gluk2 (Glur6) Wild-Type Lbd Dimer
In Complex With Glutamate
pdb|2XXR|B Chain B, Crystal Structure Of The Gluk2 (Glur6) Wild-Type Lbd Dimer
In Complex With Glutamate
pdb|2XXT|A Chain A, Crystal Structure Of The Gluk2 (Glur6) Wild-Type Lbd Dimer
In Complex With Kainate
pdb|2XXT|B Chain B, Crystal Structure Of The Gluk2 (Glur6) Wild-Type Lbd Dimer
In Complex With Kainate
Length = 261
Score = 42.7 bits (99), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/92 (26%), Positives = 43/92 (46%), Gaps = 6/92 (6%)
Query: 486 GSDMFQGFCIDVFTAAVNLLPYAVPYQFVAFG----DGHKNPSYTQLVDSITTGVFDAVV 541
G+D F+G+CID+ +L + + V G N + +V + D V
Sbjct: 28 GNDRFEGYCIDLLRELSTILGFTYEIRLVEDGKYGAQDDVNGQWNGMVRELIDHKADLAV 87
Query: 542 GDITIVTNRTKIVDFSQPYAASGLVVVVPFRK 573
+ I R K++DFS+P+ G+ ++ +RK
Sbjct: 88 APLAITYVREKVIDFSKPFMTLGISIL--YRK 117
Score = 41.2 bits (95), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 31/71 (43%)
Query: 750 AVVDERPYVELFLSSQCSFRIVGQEFTKSGWGFAFPRDSPLAVDLSSAILELAENGDLQR 809
A + E +E C+ +G G+G P SP ++ AIL+L E G L
Sbjct: 187 AFLMESTTIEFVTQRNCNLTQIGGLIDSKGYGVGTPMGSPYRDKITIAILQLQEEGKLHM 246
Query: 810 IHDKWLMKSSC 820
+ +KW + C
Sbjct: 247 MKEKWWRGNGC 257
>pdb|3G3G|A Chain A, Crystal Structure Of The Glur6 Ligand Binding Domain Dimer
K665r Mutant With Glutamate And Nacl At 1.3 Angstrom
Resolution
pdb|3G3G|B Chain B, Crystal Structure Of The Glur6 Ligand Binding Domain Dimer
K665r Mutant With Glutamate And Nacl At 1.3 Angstrom
Resolution
Length = 259
Score = 42.7 bits (99), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/92 (26%), Positives = 43/92 (46%), Gaps = 6/92 (6%)
Query: 486 GSDMFQGFCIDVFTAAVNLLPYAVPYQFVAFG----DGHKNPSYTQLVDSITTGVFDAVV 541
G+D F+G+CID+ +L + + V G N + +V + D V
Sbjct: 28 GNDRFEGYCIDLLRELSTILGFTYEIRLVEDGKYGAQDDVNGQWNGMVRELIDHKADLAV 87
Query: 542 GDITIVTNRTKIVDFSQPYAASGLVVVVPFRK 573
+ I R K++DFS+P+ G+ ++ +RK
Sbjct: 88 APLAITYVREKVIDFSKPFMTLGISIL--YRK 117
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 31/71 (43%)
Query: 750 AVVDERPYVELFLSSQCSFRIVGQEFTKSGWGFAFPRDSPLAVDLSSAILELAENGDLQR 809
A + E +E C+ +G G+G P SP ++ AIL+L E G L
Sbjct: 187 AFLMESTTIEFVTQRNCNLTQIGGLIDSKGYGVGTPMGSPYRDKITIAILQLQEEGKLHM 246
Query: 810 IHDKWLMKSSC 820
+ +KW + C
Sbjct: 247 MKEKWWRGNGC 257
>pdb|1S50|A Chain A, X-Ray Structure Of The Glur6 Ligand Binding Core (S1s2a)
In Complex With Glutamate At 1.65 A Resolution
pdb|1S7Y|A Chain A, Crystal Structure Of The Glur6 Ligand Binding Core In
Complex With Glutamate At 1.75 A Resolution Orthorhombic
Form
pdb|1S7Y|B Chain B, Crystal Structure Of The Glur6 Ligand Binding Core In
Complex With Glutamate At 1.75 A Resolution Orthorhombic
Form
pdb|1S9T|A Chain A, Crystal Structure Of The Glur6 Ligand Binding Core In
Complex With Quisqualate At 1.8a Resolution
pdb|1S9T|B Chain B, Crystal Structure Of The Glur6 Ligand Binding Core In
Complex With Quisqualate At 1.8a Resolution
pdb|1SD3|A Chain A, Crystal Structure Of The Glur6 Ligand Binding Core In
Complex With 2s,4r-4-Methylglutamate At 1.8 Angstrom
Resolution
pdb|1SD3|B Chain B, Crystal Structure Of The Glur6 Ligand Binding Core In
Complex With 2s,4r-4-Methylglutamate At 1.8 Angstrom
Resolution
pdb|1TT1|A Chain A, Crystal Structure Of The Glur6 Ligand Binding Core In
Complex With Kainate 1.93 A Resolution
pdb|1TT1|B Chain B, Crystal Structure Of The Glur6 Ligand Binding Core In
Complex With Kainate 1.93 A Resolution
pdb|3G3F|A Chain A, Crystal Structure Of The Glur6 Ligand Binding Domain Dimer
With Glutamate And Nacl At 1.38 Angstrom Resolution
pdb|3G3F|B Chain B, Crystal Structure Of The Glur6 Ligand Binding Domain Dimer
With Glutamate And Nacl At 1.38 Angstrom Resolution
Length = 259
Score = 42.7 bits (99), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/92 (26%), Positives = 43/92 (46%), Gaps = 6/92 (6%)
Query: 486 GSDMFQGFCIDVFTAAVNLLPYAVPYQFVAFG----DGHKNPSYTQLVDSITTGVFDAVV 541
G+D F+G+CID+ +L + + V G N + +V + D V
Sbjct: 28 GNDRFEGYCIDLLRELSTILGFTYEIRLVEDGKYGAQDDVNGQWNGMVRELIDHKADLAV 87
Query: 542 GDITIVTNRTKIVDFSQPYAASGLVVVVPFRK 573
+ I R K++DFS+P+ G+ ++ +RK
Sbjct: 88 APLAITYVREKVIDFSKPFMTLGISIL--YRK 117
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 31/71 (43%)
Query: 750 AVVDERPYVELFLSSQCSFRIVGQEFTKSGWGFAFPRDSPLAVDLSSAILELAENGDLQR 809
A + E +E C+ +G G+G P SP ++ AIL+L E G L
Sbjct: 187 AFLMESTTIEFVTQRNCNLTQIGGLIDSKGYGVGTPMGSPYRDKITIAILQLQEEGKLHM 246
Query: 810 IHDKWLMKSSC 820
+ +KW + C
Sbjct: 247 MKEKWWRGNGC 257
>pdb|3HSY|A Chain A, High Resolution Structure Of A Dimeric Glur2 N-Terminal
Domain (Ntd)
pdb|3HSY|B Chain B, High Resolution Structure Of A Dimeric Glur2 N-Terminal
Domain (Ntd)
Length = 376
Score = 42.7 bits (99), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 55/284 (19%), Positives = 107/284 (37%), Gaps = 50/284 (17%)
Query: 154 AVAEMVSYYGWNAVSVIFVDNEYGRNGVSALNDKLAERRCRISYKSGIPPESGVNTGYVM 213
A+ ++ YY W+ + ++ D++ G + + A+ D AE++ +++ +N G +
Sbjct: 111 ALLSLIEYYQWDKFAYLY-DSDRGLSTLQAVLDSAAEKKWQVT---------AINVGNIN 160
Query: 214 D---------LLVKVALMESRVIVLHVSPSLGFQVFSVAKYLGMMGNGYVWIAT------ 258
+ L + L + R ++L + +G GY +I
Sbjct: 161 NDKKDETYRSLFQDLELKKERRVILDCERDKVNDIVDQVITIGKHVKGYHYIIANLGFTD 220
Query: 259 -DWLAYMLDSASLPSETLESMQGVLVLRQHIPESDRKKNFLSRWKNLT-----GGSLGMN 312
D L A++ + LV + F+ RW L G
Sbjct: 221 GDLLKIQFGGANVSGFQIVDYDDSLVSK-----------FIERWSTLEEKEYPGAHTATI 269
Query: 313 SY-GLYAYDSVWLLAHAIESFFNQGGKISFSNDSRLKTMEGGNLHLGAMSIFDDGMLLLG 371
Y YD+V ++ A + Q +IS + G+ + G+ +
Sbjct: 270 KYTSALTYDAVQVMTEAFRNLRKQRIEIS-------RRGNAGDCLANPAVPWGQGVEIER 322
Query: 372 NILQSNLVGLTGPLKFNSDRSLIHAAYDIINVIGTGFRMIGYWS 415
+ Q + GL+G +KF+ + I+ +I+ + G R IGYWS
Sbjct: 323 ALKQVQVEGLSGNIKFDQNGKRINYTINIMELKTNGPRKIGYWS 366
>pdb|1JDN|A Chain A, Crystal Structure Of Hormone Receptor
pdb|1JDP|A Chain A, Crystal Structure Of Hormone/receptor Complex
pdb|1JDP|B Chain B, Crystal Structure Of Hormone/receptor Complex
Length = 441
Score = 42.7 bits (99), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/140 (21%), Positives = 62/140 (44%), Gaps = 13/140 (9%)
Query: 51 AIEEAVKDVNSNSS----ILHGTKLNITMQSSNCSG-----FIGMVEALRFMETDIVAII 101
AIE A++ V N + + GT+ + + S+C + V A R + D+ I+
Sbjct: 32 AIEYALRSVEGNGTGRRLLPPGTRFQVAYEDSDCGNRALFSLVDRVAAARGAKPDL--IL 89
Query: 102 GPQCSTVAHIVSYVSNELQVPLLSFGVTDPTLSSL--QYPFFVRTTQSDSYQMTAVAEMV 159
GP C A V+ +++ +P+LS G +Y R + + + +
Sbjct: 90 GPVCEYAAAPVARLASHWDLPMLSAGALAAGFQHKDSEYSHLTRVAPAYAKMGEMMLALF 149
Query: 160 SYYGWNAVSVIFVDNEYGRN 179
++ W+ ++++ D++ RN
Sbjct: 150 RHHHWSRAALVYSDDKLERN 169
>pdb|2XXU|A Chain A, Crystal Structure Of The Gluk2 (Glur6) M770k Lbd Dimer In
Complex With Glutamate
pdb|2XXU|B Chain B, Crystal Structure Of The Gluk2 (Glur6) M770k Lbd Dimer In
Complex With Glutamate
pdb|2XXV|A Chain A, Crystal Structure Of The Gluk2 (Glur6) M770k Lbd Dimer In
Complex With Kainate
pdb|2XXV|B Chain B, Crystal Structure Of The Gluk2 (Glur6) M770k Lbd Dimer In
Complex With Kainate
Length = 261
Score = 42.7 bits (99), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/92 (26%), Positives = 43/92 (46%), Gaps = 6/92 (6%)
Query: 486 GSDMFQGFCIDVFTAAVNLLPYAVPYQFVAFG----DGHKNPSYTQLVDSITTGVFDAVV 541
G+D F+G+CID+ +L + + V G N + +V + D V
Sbjct: 28 GNDRFEGYCIDLLRELSTILGFTYEIRLVEDGKYGAQDDVNGQWNGMVRELIDHKADLAV 87
Query: 542 GDITIVTNRTKIVDFSQPYAASGLVVVVPFRK 573
+ I R K++DFS+P+ G+ ++ +RK
Sbjct: 88 APLAITYVREKVIDFSKPFMTLGISIL--YRK 117
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 32/71 (45%)
Query: 750 AVVDERPYVELFLSSQCSFRIVGQEFTKSGWGFAFPRDSPLAVDLSSAILELAENGDLQR 809
A + E +E C+ +G G+G P+ SP ++ AIL+L E G L
Sbjct: 187 AFLMESTTIEFVTQRNCNLTQIGGLIDSKGYGVGTPKGSPYRDKITIAILQLQEEGKLHM 246
Query: 810 IHDKWLMKSSC 820
+ +KW + C
Sbjct: 247 MKEKWWRGNGC 257
>pdb|3N6V|A Chain A, Structure Of The Glua2 Ntd-Dimer Interface Mutant, T78a
pdb|3N6V|B Chain B, Structure Of The Glua2 Ntd-Dimer Interface Mutant, T78a
pdb|3N6V|C Chain C, Structure Of The Glua2 Ntd-Dimer Interface Mutant, T78a
pdb|3N6V|D Chain D, Structure Of The Glua2 Ntd-Dimer Interface Mutant, T78a
pdb|3N6V|E Chain E, Structure Of The Glua2 Ntd-Dimer Interface Mutant, T78a
pdb|3N6V|F Chain F, Structure Of The Glua2 Ntd-Dimer Interface Mutant, T78a
Length = 374
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 55/284 (19%), Positives = 107/284 (37%), Gaps = 50/284 (17%)
Query: 154 AVAEMVSYYGWNAVSVIFVDNEYGRNGVSALNDKLAERRCRISYKSGIPPESGVNTGYVM 213
A+ ++ YY W+ + ++ D++ G + + A+ D AE++ +++ +N G +
Sbjct: 109 ALLSLIEYYQWDKFAYLY-DSDRGLSTLQAVLDSAAEKKWQVT---------AINVGNIN 158
Query: 214 D---------LLVKVALMESRVIVLHVSPSLGFQVFSVAKYLGMMGNGYVWIAT------ 258
+ L + L + R ++L + +G GY +I
Sbjct: 159 NDKKDETYRSLFQDLELKKERRVILDCERDKVNDIVDQVITIGKHVKGYHYIIANLGFTD 218
Query: 259 -DWLAYMLDSASLPSETLESMQGVLVLRQHIPESDRKKNFLSRWKNLT-----GGSLGMN 312
D L A++ + LV + F+ RW L G
Sbjct: 219 GDLLKIQFGGANVSGFQIVDYDDSLVSK-----------FIERWSTLEEKEYPGAHTATI 267
Query: 313 SY-GLYAYDSVWLLAHAIESFFNQGGKISFSNDSRLKTMEGGNLHLGAMSIFDDGMLLLG 371
Y YD+V ++ A + Q +IS + G+ + G+ +
Sbjct: 268 KYTSALTYDAVQVMTEAFRNLRKQRIEIS-------RRGNAGDCLANPAVPWGQGVEIER 320
Query: 372 NILQSNLVGLTGPLKFNSDRSLIHAAYDIINVIGTGFRMIGYWS 415
+ Q + GL+G +KF+ + I+ +I+ + G R IGYWS
Sbjct: 321 ALKQVQVEGLSGNIKFDQNGKRINYTINIMELKTNGPRKIGYWS 364
>pdb|1PB7|A Chain A, Crystal Structure Of The Nr1 Ligand Binding Core In
Complex With Glycine At 1.35 Angstroms Resolution
pdb|1PBQ|A Chain A, Crystal Structure Of The Nr1 Ligand Binding Core In
Complex With 5,7-Dichlorokynurenic Acid (Dcka) At 1.90
Angstroms Resolution
pdb|1PBQ|B Chain B, Crystal Structure Of The Nr1 Ligand Binding Core In
Complex With 5,7-Dichlorokynurenic Acid (Dcka) At 1.90
Angstroms Resolution
pdb|1Y1M|A Chain A, Crystal Structure Of The Nr1 Ligand Binding Core In
Complex With Cycloleucine
pdb|1Y1M|B Chain B, Crystal Structure Of The Nr1 Ligand Binding Core In
Complex With Cycloleucine
pdb|1Y1Z|A Chain A, Crystal Structure Of The Nr1 Ligand Binding Core In
Complex With Acbc
pdb|1Y20|A Chain A, Crystal Structure Of The Nr1 Ligand-binding Core In
Complex With Acpc
pdb|2A5T|A Chain A, Crystal Structure Of The Nr1NR2A LIGAND-Binding Cores
Complex
Length = 292
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 33/63 (52%)
Query: 758 VELFLSSQCSFRIVGQEFTKSGWGFAFPRDSPLAVDLSSAILELAENGDLQRIHDKWLMK 817
+E S +C G+ F +SG+G +DSP ++S +IL+ ENG ++ + W+
Sbjct: 228 LEFEASQKCDLVTTGELFFRSGFGIGMRKDSPWKQNVSLSILKSHENGFMEDLDKTWVRY 287
Query: 818 SSC 820
C
Sbjct: 288 QEC 290
Score = 40.0 bits (92), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 20/86 (23%), Positives = 38/86 (44%), Gaps = 8/86 (9%)
Query: 492 GFCIDVFTAAVNLLPYAVPYQFVAFG--------DGHKNPSYTQLVDSITTGVFDAVVGD 543
GFCID+ + + VA G + + ++ + +G D +V
Sbjct: 65 GFCIDLLIKLARTMNFTYEVHLVADGKFGTQERVNNSNKKEWNGMMGELLSGQADMIVAP 124
Query: 544 ITIVTNRTKIVDFSQPYAASGLVVVV 569
+TI R + ++FS+P+ GL ++V
Sbjct: 125 LTINNERAQYIEFSKPFKYQGLTILV 150
>pdb|1PB8|A Chain A, Crystal Structure Of The Nr1 Ligand Binding Core In
Complex With D-Serine At 1.45 Angstroms Resolution
pdb|1PB9|A Chain A, Crystal Structure Of The Nr1 Ligand Binding Core In
Complex With D-Cycloserine At 1.60 Angstroms Resolution
Length = 292
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 33/63 (52%)
Query: 758 VELFLSSQCSFRIVGQEFTKSGWGFAFPRDSPLAVDLSSAILELAENGDLQRIHDKWLMK 817
+E S +C G+ F +SG+G +DSP ++S +IL+ ENG ++ + W+
Sbjct: 228 LEFEASQKCDLVTTGELFFRSGFGIGMRKDSPWKQNVSLSILKSHENGFMEDLDKTWVRY 287
Query: 818 SSC 820
C
Sbjct: 288 QEC 290
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/86 (24%), Positives = 39/86 (45%), Gaps = 8/86 (9%)
Query: 492 GFCIDVFTAAVNLLPYAVPYQFVAFG--------DGHKNPSYTQLVDSITTGVFDAVVGD 543
GFCID+ + + VA G + + ++ + +G D +V
Sbjct: 65 GFCIDLLIKLARTMNFTYEVHLVADGKFGTQERVNNSNKKEWNGMMGELLSGQADMIVAP 124
Query: 544 ITIVTNRTKIVDFSQPYAASGLVVVV 569
+TI T R + ++FS+P+ GL ++V
Sbjct: 125 LTINTERAQYIEFSKPFKYQGLTILV 150
>pdb|3FAT|A Chain A, X-Ray Structure Of Iglur4 Flip Ligand-Binding Core (S1s2)
In Complex With (S)-Ampa At 1.90a Resolution
pdb|3FAT|B Chain B, X-Ray Structure Of Iglur4 Flip Ligand-Binding Core (S1s2)
In Complex With (S)-Ampa At 1.90a Resolution
pdb|3FAT|C Chain C, X-Ray Structure Of Iglur4 Flip Ligand-Binding Core (S1s2)
In Complex With (S)-Ampa At 1.90a Resolution
pdb|3FAS|A Chain A, X-Ray Structure Of Iglur4 Flip Ligand-Binding Core (S1s2)
In Complex With (S)-Glutamate At 1.40a Resolution
pdb|3FAS|B Chain B, X-Ray Structure Of Iglur4 Flip Ligand-Binding Core (S1s2)
In Complex With (S)-Glutamate At 1.40a Resolution
Length = 260
Score = 42.4 bits (98), Expect = 0.001, Method: Composition-based stats.
Identities = 35/139 (25%), Positives = 62/139 (44%), Gaps = 15/139 (10%)
Query: 688 SPINGIESLRKSDDPIGY---QEGSFAEYYLSQELNISKSRLVALRT--PEDYAKALKDG 742
+PI E L K + I Y GS E++ ++ + + +R+ P + + +G
Sbjct: 117 TPIESAEDLAKQTE-IAYGTLDSGSTKEFFRRSKIAVYEKMWTYMRSAEPSVFTRTTAEG 175
Query: 743 -----PGKGGVAAVVDE--RPYVELFLSSQCSFRIVGQEFTKSGWGFAFPRDSPLAVDLS 795
KG A +++ Y+E C VG G+G A P+ S L ++
Sbjct: 176 VARVRKSKGKFAFLLESTMNEYIEQ--RKPCDTMKVGGNLDSKGYGVATPKGSSLRTPVN 233
Query: 796 SAILELAENGDLQRIHDKW 814
A+L+L+E G L ++ +KW
Sbjct: 234 LAVLKLSEAGVLDKLKNKW 252
Score = 38.5 bits (88), Expect = 0.017, Method: Composition-based stats.
Identities = 19/99 (19%), Positives = 47/99 (47%), Gaps = 8/99 (8%)
Query: 477 YREFVSKVRGSDMFQGFCIDVFTAAVNLLPYAVPYQFVAFGDGHKNPS------YTQLVD 530
Y++ G+D ++G+C+D+ + + + Y+ DG + +V
Sbjct: 17 YKKNHEMFEGNDKYEGYCVDLASEIAKHI--GIKYKIAIVPDGKYGARDADTKIWNGMVG 74
Query: 531 SITTGVFDAVVGDITIVTNRTKIVDFSQPYAASGLVVVV 569
+ G + + +TI R +++DFS+P+ + G+ +++
Sbjct: 75 ELVYGKAEIAIAPLTITLVREEVIDFSKPFMSLGISIMI 113
>pdb|2V3U|A Chain A, Structure Of The Ligand-binding Core Of The Ionotropic
Glutamate Receptor-like Glurdelta2 In Complex With D-
Serine
Length = 265
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 28/58 (48%), Gaps = 1/58 (1%)
Query: 766 CSFRIVGQEFTKSGWGFAFPRDSPLAVDLSSAILELAENGDLQRIHDKWLMKS-SCSL 822
CSF VG G+G A SP S ILEL ++GD+ + KW K+ C L
Sbjct: 208 CSFYTVGNTVADRGYGIALQHGSPYRDVFSQRILELQQSGDMDILKHKWWPKNGQCDL 265
Score = 33.1 bits (74), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 34/76 (44%), Gaps = 7/76 (9%)
Query: 490 FQGFCIDVFTAAVNLLP-----YAVPYQFVAFGDGHKNPSYTQLVDSITTGVFDAVVGDI 544
+QGF IDV A N L Y P +G ++ ++ LV + D + +
Sbjct: 29 YQGFSIDVLDALSNYLGFNYEIYVAPDH--KYGSPQEDGTWNGLVGELVFKRADIGISAL 86
Query: 545 TIVTNRTKIVDFSQPY 560
TI +R +VDF+ Y
Sbjct: 87 TITPDRENVVDFTTRY 102
>pdb|3T9X|B Chain B, Glutamate Bound To A Double Cysteine Mutant (V484cE657C)
OF THE Ligand Binding Domain Of Glua2
pdb|3T9X|D Chain D, Glutamate Bound To A Double Cysteine Mutant (V484cE657C)
OF THE Ligand Binding Domain Of Glua2
pdb|3T9X|F Chain F, Glutamate Bound To A Double Cysteine Mutant (V484cE657C)
OF THE Ligand Binding Domain Of Glua2
Length = 258
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/92 (22%), Positives = 45/92 (48%), Gaps = 8/92 (8%)
Query: 484 VRGSDMFQGFCIDVFTAAVNLLPYAVPYQFVAFGDGHKNPS------YTQLVDSITTGVF 537
+ G++ ++G+C+D+ AA Y+ GDG + +V + G
Sbjct: 23 LEGNERYEGYCVDL--AAEIAKHCGFKYKLTIVGDGKYGARDADTKIWNGMVGELVYGKA 80
Query: 538 DAVVGDITIVTNRTKIVDFSQPYAASGLVVVV 569
D + +TI R +++DFS+P+ + G+ +++
Sbjct: 81 DIAIAPLTITLCREEVIDFSKPFMSLGISIMI 112
Score = 37.0 bits (84), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 26/49 (53%)
Query: 766 CSFRIVGQEFTKSGWGFAFPRDSPLAVDLSSAILELAENGDLQRIHDKW 814
C VG G+G A P+ S L ++ A+L+L E G L ++ +KW
Sbjct: 203 CDTMKVGGNLDSKGYGIATPKGSSLGNAVNLAVLKLNEQGLLDKLKNKW 251
>pdb|2GFE|A Chain A, Crystal Structure Of The Glur2 A476e S673d Ligand Binding
Core Mutant At 1.54 Angstroms Resolution
pdb|2GFE|B Chain B, Crystal Structure Of The Glur2 A476e S673d Ligand Binding
Core Mutant At 1.54 Angstroms Resolution
pdb|2GFE|C Chain C, Crystal Structure Of The Glur2 A476e S673d Ligand Binding
Core Mutant At 1.54 Angstroms Resolution
Length = 262
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/92 (22%), Positives = 45/92 (48%), Gaps = 8/92 (8%)
Query: 484 VRGSDMFQGFCIDVFTAAVNLLPYAVPYQFVAFGDG------HKNPSYTQLVDSITTGVF 537
+ G++ ++G+C+D+ AA Y+ GDG + +V + G
Sbjct: 26 LEGNERYEGYCVDL--AAEIAKHCGFKYKLTIVGDGKYGARDEDTKIWNGMVGELVYGKA 83
Query: 538 DAVVGDITIVTNRTKIVDFSQPYAASGLVVVV 569
D + +TI R +++DFS+P+ + G+ +++
Sbjct: 84 DIAIAPLTITLVREEVIDFSKPFMSLGISIMI 115
Score = 39.7 bits (91), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 33/137 (24%), Positives = 59/137 (43%), Gaps = 11/137 (8%)
Query: 688 SPINGIESLRKSDDPIGY---QEGSFAEYYLSQELNISKSRLVALRT--PEDYAKALKDG 742
+PI E L K + I Y +GS E++ ++ + +R+ P + + +G
Sbjct: 119 TPIESAEDLSKQTE-IAYGTLDDGSTKEFFRRSKIAVFDKMWTYMRSAEPSVFVRTTAEG 177
Query: 743 -----PGKGGVAAVVDERPYVELFLSSQCSFRIVGQEFTKSGWGFAFPRDSPLAVDLSSA 797
KG A +++ + C VG G+G A P+ S L ++ A
Sbjct: 178 VARVRKSKGKYAYLLESTMNEYIEQRKPCDTMKVGGNLDSKGYGIATPKGSSLGNAVNLA 237
Query: 798 ILELAENGDLQRIHDKW 814
+L+L E G L ++ +KW
Sbjct: 238 VLKLNEQGLLDKLKNKW 254
>pdb|2WJW|A Chain A, Crystal Structure Of The Human Ionotropic Glutamate
Receptor Glur2 Atd Region At 1.8 A Resolution
pdb|2WJX|A Chain A, Crystal Structure Of The Human Ionotropic Glutamate
Receptor Glur2 Atd Region At 4.1 A Resolution
pdb|2WJX|B Chain B, Crystal Structure Of The Human Ionotropic Glutamate
Receptor Glur2 Atd Region At 4.1 A Resolution
pdb|2WJX|C Chain C, Crystal Structure Of The Human Ionotropic Glutamate
Receptor Glur2 Atd Region At 4.1 A Resolution
Length = 388
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 53/284 (18%), Positives = 107/284 (37%), Gaps = 50/284 (17%)
Query: 154 AVAEMVSYYGWNAVSVIFVDNEYGRNGVSALNDKLAERRCRISYKSGIPPESGVNTGYVM 213
A+ ++ YY W+ + ++ D++ G + + A+ D AE++ +++ +N G +
Sbjct: 111 ALLSLIEYYQWDKFAYLY-DSDRGLSTLQAVLDSAAEKKWQVT---------AINVGNIN 160
Query: 214 D---------LLVKVALMESRVIVLHVSPSLGFQVFSVAKYLGMMGNGYVWIAT------ 258
+ L + L + R ++L + +G GY +I
Sbjct: 161 NDKKDEMYRSLFQDLELKKERRVILDCERDKVNDIVDQVITIGKHVKGYHYIIANLGFTD 220
Query: 259 -DWLAYMLDSASLPSETLESMQGVLVLRQHIPESDRKKNFLSRWKNLT------GGSLGM 311
D L A++ + LV + F+ RW L + +
Sbjct: 221 GDLLKIQFGGANVSGFQIVDYDDSLVSK-----------FIERWSTLEEKEYPGAHTTTI 269
Query: 312 NSYGLYAYDSVWLLAHAIESFFNQGGKISFSNDSRLKTMEGGNLHLGAMSIFDDGMLLLG 371
YD+V ++ A + Q +IS + G+ + G+ +
Sbjct: 270 KYTSALTYDAVQVMTEAFRNLRKQRIEIS-------RRGNAGDCLANPAVPWGQGVEIER 322
Query: 372 NILQSNLVGLTGPLKFNSDRSLIHAAYDIINVIGTGFRMIGYWS 415
+ Q + GL+G +KF+ + I+ +I+ + G R IGYWS
Sbjct: 323 ALKQVQVEGLSGNIKFDQNGKRINYTINIMELKTNGPRKIGYWS 366
>pdb|3RN8|A Chain A, Crystal Structure Of Iglur2 Ligand Binding Domain And
Symmetrical Carboxyl Containing Potentiator
pdb|3RN8|B Chain B, Crystal Structure Of Iglur2 Ligand Binding Domain And
Symmetrical Carboxyl Containing Potentiator
pdb|3RN8|C Chain C, Crystal Structure Of Iglur2 Ligand Binding Domain And
Symmetrical Carboxyl Containing Potentiator
Length = 280
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/92 (22%), Positives = 45/92 (48%), Gaps = 8/92 (8%)
Query: 484 VRGSDMFQGFCIDVFTAAVNLLPYAVPYQFVAFGDGHKNPS------YTQLVDSITTGVF 537
+ G++ ++G+C+D+ AA Y+ GDG + +V + G
Sbjct: 27 LEGNERYEGYCVDL--AAEIAKHCGFKYKLTIVGDGKYGARDADTKIWNGMVGELVYGKA 84
Query: 538 DAVVGDITIVTNRTKIVDFSQPYAASGLVVVV 569
D + +TI R +++DFS+P+ + G+ +++
Sbjct: 85 DIAIAPLTITLVREEVIDFSKPFMSLGISIMI 116
Score = 38.5 bits (88), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 33/137 (24%), Positives = 58/137 (42%), Gaps = 11/137 (8%)
Query: 688 SPINGIESLRKSDDPIGY---QEGSFAEYYLSQELNISKSRLVALRT--PEDYAKALKDG 742
+PI E L K + I Y GS E++ ++ + +R+ P + + +G
Sbjct: 120 TPIESAEDLSKQTE-IAYGTLDSGSTKEFFRRSKIAVFDKMWTYMRSAEPSVFVRTTAEG 178
Query: 743 -----PGKGGVAAVVDERPYVELFLSSQCSFRIVGQEFTKSGWGFAFPRDSPLAVDLSSA 797
KG A +++ + C VG G+G A P+ S L ++ A
Sbjct: 179 VARVRKSKGKYAYLLESTMNEYIEQRKPCDTMKVGGNLDSKGYGIATPKGSSLGNAVNLA 238
Query: 798 ILELAENGDLQRIHDKW 814
+L+L E G L ++ +KW
Sbjct: 239 VLKLNEQGLLDKLKNKW 255
>pdb|2ANJ|A Chain A, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j-
Y450w) Mutant In Complex With The Partial Agonist Kainic
Acid At 2.1 A Resolution
Length = 263
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/92 (22%), Positives = 45/92 (48%), Gaps = 8/92 (8%)
Query: 484 VRGSDMFQGFCIDVFTAAVNLLPYAVPYQFVAFGDGH------KNPSYTQLVDSITTGVF 537
+ G++ ++G+C+D+ AA Y+ GDG + +V + G
Sbjct: 26 LEGNERYEGYCVDL--AAEIAKHCGFKYKLTIVGDGKWGARDADTKIWNGMVGELVYGKA 83
Query: 538 DAVVGDITIVTNRTKIVDFSQPYAASGLVVVV 569
D + +TI R +++DFS+P+ + G+ +++
Sbjct: 84 DIAIAPLTITLVREEVIDFSKPFMSLGISIMI 115
Score = 38.9 bits (89), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 33/137 (24%), Positives = 58/137 (42%), Gaps = 11/137 (8%)
Query: 688 SPINGIESLRKSDDPIGY---QEGSFAEYYLSQELNISKSRLVALRT--PEDYAKALKDG 742
+PI E L K + I Y GS E++ ++ + +R+ P + + +G
Sbjct: 119 TPIESAEDLSKQTE-IAYGTLDSGSTKEFFRRSKIAVFDKMWTYMRSAEPSVFVRTTAEG 177
Query: 743 -----PGKGGVAAVVDERPYVELFLSSQCSFRIVGQEFTKSGWGFAFPRDSPLAVDLSSA 797
KG A +++ + C VG G+G A P+ S L ++ A
Sbjct: 178 VARVRKSKGKYAYLLESTMNEYIEQRKPCDTMKVGGNLDSKGYGIATPKGSSLGNAVNLA 237
Query: 798 ILELAENGDLQRIHDKW 814
+L+L E G L ++ +KW
Sbjct: 238 VLKLNEQGLLDKLKNKW 254
>pdb|3B6W|C Chain C, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
T686s Mutant In Complex With Glutamate At 1.7 Resolution
pdb|3B6W|D Chain D, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
T686s Mutant In Complex With Glutamate At 1.7 Resolution
pdb|3B6W|A Chain A, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
T686s Mutant In Complex With Glutamate At 1.7 Resolution
pdb|3B6W|B Chain B, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
T686s Mutant In Complex With Glutamate At 1.7 Resolution
Length = 263
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/92 (22%), Positives = 45/92 (48%), Gaps = 8/92 (8%)
Query: 484 VRGSDMFQGFCIDVFTAAVNLLPYAVPYQFVAFGDGHKNPS------YTQLVDSITTGVF 537
+ G++ ++G+C+D+ AA Y+ GDG + +V + G
Sbjct: 26 LEGNERYEGYCVDL--AAEIAKHCGFKYKLTIVGDGKYGARDADTKIWNGMVGELVYGKA 83
Query: 538 DAVVGDITIVTNRTKIVDFSQPYAASGLVVVV 569
D + +TI R +++DFS+P+ + G+ +++
Sbjct: 84 DIAIAPLTITLVREEVIDFSKPFMSLGISIMI 115
Score = 38.1 bits (87), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 33/137 (24%), Positives = 58/137 (42%), Gaps = 11/137 (8%)
Query: 688 SPINGIESLRKSDDPIGY---QEGSFAEYYLSQELNISKSRLVALRT--PEDYAKALKDG 742
+PI E L K + I Y GS E++ ++ + +R+ P + + +G
Sbjct: 119 TPIESAEDLSKQTE-IAYGTLDSGSTKEFFRRSKIAVFDKMWTYMRSAEPSVFVRTSAEG 177
Query: 743 -----PGKGGVAAVVDERPYVELFLSSQCSFRIVGQEFTKSGWGFAFPRDSPLAVDLSSA 797
KG A +++ + C VG G+G A P+ S L ++ A
Sbjct: 178 VARVRKSKGKYAYLLESTMNEYIEQRKPCDTMKVGGNLDSKGYGIATPKGSSLGNAVNLA 237
Query: 798 ILELAENGDLQRIHDKW 814
+L+L E G L ++ +KW
Sbjct: 238 VLKLNEQGLLDKLKNKW 254
>pdb|3T93|B Chain B, Glutamate Bound To A Double Cysteine Mutant (A452cS652C)
OF THE Ligand Binding Domain Of Glua2
pdb|3T93|D Chain D, Glutamate Bound To A Double Cysteine Mutant (A452cS652C)
OF THE Ligand Binding Domain Of Glua2
pdb|3T93|F Chain F, Glutamate Bound To A Double Cysteine Mutant (A452cS652C)
OF THE Ligand Binding Domain Of Glua2
pdb|3T96|B Chain B, Iodowillardiine Bound To A Double Cysteine Mutant
(A452cS652C) OF THE Ligand Binding Domain Of Glua2
pdb|3T96|D Chain D, Iodowillardiine Bound To A Double Cysteine Mutant
(A452cS652C) OF THE Ligand Binding Domain Of Glua2
pdb|3T96|F Chain F, Iodowillardiine Bound To A Double Cysteine Mutant
(A452cS652C) OF THE Ligand Binding Domain Of Glua2
pdb|3T9H|B Chain B, Kainate Bound To A Double Cysteine Mutant (A452cS652C) OF
THE LIGAND Binding Domain Of Glua2
pdb|3T9H|D Chain D, Kainate Bound To A Double Cysteine Mutant (A452cS652C) OF
THE LIGAND Binding Domain Of Glua2
pdb|3T9H|F Chain F, Kainate Bound To A Double Cysteine Mutant (A452cS652C) OF
THE LIGAND Binding Domain Of Glua2
pdb|3T9U|A Chain A, Cnqx Bound To An Oxidized Double Cysteine Mutant
(A452cS652C) OF THE Ligand Binding Domain Of Glua2
pdb|3T9U|B Chain B, Cnqx Bound To An Oxidized Double Cysteine Mutant
(A452cS652C) OF THE Ligand Binding Domain Of Glua2
pdb|3T9U|C Chain C, Cnqx Bound To An Oxidized Double Cysteine Mutant
(A452cS652C) OF THE Ligand Binding Domain Of Glua2
pdb|3T9V|A Chain A, Cnqx Bound To A Reduced Double Cysteine Mutant
(A452cS652C) OF THE Ligand Binding Domain Of Glua2
pdb|3T9V|B Chain B, Cnqx Bound To A Reduced Double Cysteine Mutant
(A452cS652C) OF THE Ligand Binding Domain Of Glua2
Length = 258
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/92 (22%), Positives = 45/92 (48%), Gaps = 8/92 (8%)
Query: 484 VRGSDMFQGFCIDVFTAAVNLLPYAVPYQFVAFGDGH------KNPSYTQLVDSITTGVF 537
+ G++ ++G+C+D+ AA Y+ GDG + +V + G
Sbjct: 23 LEGNERYEGYCVDL--AAEIAKHCGFKYKLTIVGDGKYGCRDADTKIWNGMVGELVYGKA 80
Query: 538 DAVVGDITIVTNRTKIVDFSQPYAASGLVVVV 569
D + +TI R +++DFS+P+ + G+ +++
Sbjct: 81 DIAIAPLTITLVREEVIDFSKPFMSLGISIMI 112
Score = 38.5 bits (88), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 33/137 (24%), Positives = 58/137 (42%), Gaps = 11/137 (8%)
Query: 688 SPINGIESLRKSDDPIGYQE---GSFAEYYLSQELNISKSRLVALRT--PEDYAKALKDG 742
+PI E L K + I Y GS E++ ++ + +R+ P + + +G
Sbjct: 116 TPIESAEDLSKQTE-IAYGTLDCGSTKEFFRRSKIAVFDKMWTYMRSAEPSVFVRTTAEG 174
Query: 743 -----PGKGGVAAVVDERPYVELFLSSQCSFRIVGQEFTKSGWGFAFPRDSPLAVDLSSA 797
KG A +++ + C VG G+G A P+ S L ++ A
Sbjct: 175 VARVRKSKGKYAYLLESTMNEYIEQRKPCDTMKVGGNLDSKGYGIATPKGSSLGNAVNLA 234
Query: 798 ILELAENGDLQRIHDKW 814
+L+L E G L ++ +KW
Sbjct: 235 VLKLNEQGLLDKLKNKW 251
>pdb|3PD9|A Chain A, X-Ray Structure Of The Ligand-Binding Core Of Glua2 In
Complex With (R)-5-Hpca At 2.1 A Resolution
pdb|3PD9|B Chain B, X-Ray Structure Of The Ligand-Binding Core Of Glua2 In
Complex With (R)-5-Hpca At 2.1 A Resolution
Length = 260
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/92 (22%), Positives = 45/92 (48%), Gaps = 8/92 (8%)
Query: 484 VRGSDMFQGFCIDVFTAAVNLLPYAVPYQFVAFGDGHKNPS------YTQLVDSITTGVF 537
+ G++ ++G+C+D+ AA Y+ GDG + +V + G
Sbjct: 24 LEGNERYEGYCVDL--AAEIAKHCGFKYKLTIVGDGKYGARDADTKIWNGMVGELVYGKA 81
Query: 538 DAVVGDITIVTNRTKIVDFSQPYAASGLVVVV 569
D + +TI R +++DFS+P+ + G+ +++
Sbjct: 82 DIAIAPLTITLVREEVIDFSKPFMSLGISIMI 113
Score = 39.3 bits (90), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 33/137 (24%), Positives = 58/137 (42%), Gaps = 11/137 (8%)
Query: 688 SPINGIESLRKSDDPIGY---QEGSFAEYYLSQELNISKSRLVALRT--PEDYAKALKDG 742
+PI E L K + I Y GS E++ ++ + +R+ P + + +G
Sbjct: 117 TPIESAEDLSKQTE-IAYGTLDSGSTKEFFRRSKIAVFDKMWTYMRSAEPSVFVRTTAEG 175
Query: 743 -----PGKGGVAAVVDERPYVELFLSSQCSFRIVGQEFTKSGWGFAFPRDSPLAVDLSSA 797
KG A +++ + C VG G+G A P+ S L ++ A
Sbjct: 176 VARVRKSKGKYAYLLESTMNEYIEQRKPCDTMKVGGNLDSKGYGIATPKGSSLGNAVNLA 235
Query: 798 ILELAENGDLQRIHDKW 814
+L+L E G L ++ +KW
Sbjct: 236 VLKLNEQGLLDKLKNKW 252
>pdb|1LBC|A Chain A, Crystal Structure Of Glur2 Ligand Binding Core (S1s2j-
N775s) In Complex With Cyclothiazide (Ctz) As Well As
Glutamate At 1.8 A Resolution
pdb|1LBC|B Chain B, Crystal Structure Of Glur2 Ligand Binding Core (S1s2j-
N775s) In Complex With Cyclothiazide (Ctz) As Well As
Glutamate At 1.8 A Resolution
pdb|1LBC|C Chain C, Crystal Structure Of Glur2 Ligand Binding Core (S1s2j-
N775s) In Complex With Cyclothiazide (Ctz) As Well As
Glutamate At 1.8 A Resolution
pdb|3H6T|A Chain A, Crystal Structure Of The Iglur2 Ligand-Binding Core
(S1s2j-N754s) In Complex With Glutamate And
Cyclothiazide At 2.25 A Resolution
pdb|3H6T|B Chain B, Crystal Structure Of The Iglur2 Ligand-Binding Core
(S1s2j-N754s) In Complex With Glutamate And
Cyclothiazide At 2.25 A Resolution
pdb|3H6T|C Chain C, Crystal Structure Of The Iglur2 Ligand-Binding Core
(S1s2j-N754s) In Complex With Glutamate And
Cyclothiazide At 2.25 A Resolution
pdb|3H6U|A Chain A, Crystal Structure Of The Iglur2 Ligand-binding Core
(s1s2j-n754s) In Complex With Glutamate And Ns1493 At
1.85 A Resolution
pdb|3H6V|A Chain A, Crystal Structure Of The Iglur2 Ligand-Binding Core
(S1s2j-N754s) In Complex With Glutamate And Ns5206 At
2.10 A Resolution
pdb|3H6V|B Chain B, Crystal Structure Of The Iglur2 Ligand-Binding Core
(S1s2j-N754s) In Complex With Glutamate And Ns5206 At
2.10 A Resolution
pdb|3H6W|A Chain A, Crystal Structure Of The Iglur2 Ligand-Binding Core
(S1s2j-N754s) In Complex With Glutamate And Ns5217 At
1.50 A Resolution
pdb|3H6W|B Chain B, Crystal Structure Of The Iglur2 Ligand-Binding Core
(S1s2j-N754s) In Complex With Glutamate And Ns5217 At
1.50 A Resolution
pdb|3KGC|A Chain A, Isolated Ligand Binding Domain Dimer Of Glua2 Ionotropic
Glutamate Receptor In Complex With Glutamate, Ly 404187
And Zk 200775
pdb|3KGC|B Chain B, Isolated Ligand Binding Domain Dimer Of Glua2 Ionotropic
Glutamate Receptor In Complex With Glutamate, Ly 404187
And Zk 200775
pdb|3BBR|A Chain A, Crystal Structure Of The Iglur2 Ligand Binding Core
(S1s2j-N775s) In Complex With A Dimeric Positive
Modulator As Well As Glutamate At 2.25 A Resolution
pdb|3BBR|B Chain B, Crystal Structure Of The Iglur2 Ligand Binding Core
(S1s2j-N775s) In Complex With A Dimeric Positive
Modulator As Well As Glutamate At 2.25 A Resolution
pdb|2XX9|A Chain A, Crystal Structure Of
1-((2-Fluoro-4-(3-(Trifluoromethyl)-4,5,6,7-
Tetrahydro-1h-Indazol-1-Yl)phenyl)methyl)-2-
Pyrrolidinone In Complex With The Ligand Binding Domain
Of The Rat Glua2 Receptor And Glutamate At 2.2a
Resolution.
pdb|2XX9|B Chain B, Crystal Structure Of
1-((2-Fluoro-4-(3-(Trifluoromethyl)-4,5,6,7-
Tetrahydro-1h-Indazol-1-Yl)phenyl)methyl)-2-
Pyrrolidinone In Complex With The Ligand Binding Domain
Of The Rat Glua2 Receptor And Glutamate At 2.2a
Resolution.
pdb|2XX9|C Chain C, Crystal Structure Of
1-((2-Fluoro-4-(3-(Trifluoromethyl)-4,5,6,7-
Tetrahydro-1h-Indazol-1-Yl)phenyl)methyl)-2-
Pyrrolidinone In Complex With The Ligand Binding Domain
Of The Rat Glua2 Receptor And Glutamate At 2.2a
Resolution.
pdb|2XXH|A Chain A, Crystal Structure Of
1-(4-(2-Oxo-2-(1-Pyrrolidinyl)ethyl)phenyl)-3-
(Trifluoromethyl)-4,5,6,7-Tetrahydro-1h-Indazole In
Complex With The Ligand Binding Domain Of The Rat Glua2
Receptor And Glutamate At 1.5a Resolution.
pdb|2XXH|B Chain B, Crystal Structure Of
1-(4-(2-Oxo-2-(1-Pyrrolidinyl)ethyl)phenyl)-3-
(Trifluoromethyl)-4,5,6,7-Tetrahydro-1h-Indazole In
Complex With The Ligand Binding Domain Of The Rat Glua2
Receptor And Glutamate At 1.5a Resolution.
pdb|2XXH|C Chain C, Crystal Structure Of
1-(4-(2-Oxo-2-(1-Pyrrolidinyl)ethyl)phenyl)-3-
(Trifluoromethyl)-4,5,6,7-Tetrahydro-1h-Indazole In
Complex With The Ligand Binding Domain Of The Rat Glua2
Receptor And Glutamate At 1.5a Resolution.
pdb|2XXI|A Chain A, Crystal Structure Of
1-((4-(3-(Trifluoromethyl)-6,7-Dihydropyrano(4,3
-C(Pyrazol-1(4h)-Yl)phenyl)methyl)-2-Pyrrolidinone In
Complex With The Ligand Binding Domain Of The Rat Glua2
Receptor And Glutamate At 1.6a Resolution.
pdb|2XXI|B Chain B, Crystal Structure Of
1-((4-(3-(Trifluoromethyl)-6,7-Dihydropyrano(4,3
-C(Pyrazol-1(4h)-Yl)phenyl)methyl)-2-Pyrrolidinone In
Complex With The Ligand Binding Domain Of The Rat Glua2
Receptor And Glutamate At 1.6a Resolution.
pdb|2XXI|C Chain C, Crystal Structure Of
1-((4-(3-(Trifluoromethyl)-6,7-Dihydropyrano(4,3
-C(Pyrazol-1(4h)-Yl)phenyl)methyl)-2-Pyrrolidinone In
Complex With The Ligand Binding Domain Of The Rat Glua2
Receptor And Glutamate At 1.6a Resolution.
pdb|2XX8|A Chain A, Crystal Structure Of
N,N-Dimethyl-4-(3-(Trifluoromethyl)-4,
5,6,7-Tetrahydro-1h-Indazol-1-Yl)benzamide In Complex
With The Ligand Binding Domain Of The Rat Glua2 Receptor
And Glutamate At 2.2a Resolution.
pdb|2XX8|B Chain B, Crystal Structure Of
N,N-Dimethyl-4-(3-(Trifluoromethyl)-4,
5,6,7-Tetrahydro-1h-Indazol-1-Yl)benzamide In Complex
With The Ligand Binding Domain Of The Rat Glua2 Receptor
And Glutamate At 2.2a Resolution.
pdb|2XX8|C Chain C, Crystal Structure Of
N,N-Dimethyl-4-(3-(Trifluoromethyl)-4,
5,6,7-Tetrahydro-1h-Indazol-1-Yl)benzamide In Complex
With The Ligand Binding Domain Of The Rat Glua2 Receptor
And Glutamate At 2.2a Resolution
Length = 263
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/92 (22%), Positives = 45/92 (48%), Gaps = 8/92 (8%)
Query: 484 VRGSDMFQGFCIDVFTAAVNLLPYAVPYQFVAFGDGHKNPS------YTQLVDSITTGVF 537
+ G++ ++G+C+D+ AA Y+ GDG + +V + G
Sbjct: 26 LEGNERYEGYCVDL--AAEIAKHCGFKYKLTIVGDGKYGARDADTKIWNGMVGELVYGKA 83
Query: 538 DAVVGDITIVTNRTKIVDFSQPYAASGLVVVV 569
D + +TI R +++DFS+P+ + G+ +++
Sbjct: 84 DIAIAPLTITLVREEVIDFSKPFMSLGISIMI 115
Score = 40.0 bits (92), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 33/137 (24%), Positives = 59/137 (43%), Gaps = 11/137 (8%)
Query: 688 SPINGIESLRKSDDPIGY---QEGSFAEYYLSQELNISKSRLVALRT--PEDYAKALKDG 742
+PI E L K + I Y GS E++ ++ + +R+ P + + +G
Sbjct: 119 TPIESAEDLSKQTE-IAYGTLDSGSTKEFFRRSKIAVFDKMWTYMRSAEPSVFVRTTAEG 177
Query: 743 -----PGKGGVAAVVDERPYVELFLSSQCSFRIVGQEFTKSGWGFAFPRDSPLAVDLSSA 797
KG A +++ + C VG G+G A P+ S L ++ A
Sbjct: 178 VARVRKSKGKYAYLLESTMNEYIEQRKPCDTMKVGGNLDSKGYGIATPKGSSLGNAVNLA 237
Query: 798 ILELAENGDLQRIHDKW 814
+L+L+E G L ++ +KW
Sbjct: 238 VLKLSEQGLLDKLKNKW 254
>pdb|3B6T|A Chain A, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
T686a Mutant In Complex With Quisqualate At 2.1
Resolution
pdb|3B6Q|A Chain A, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
Mutant T686a In Complex With Glutamate At 2.0 Resolution
Length = 263
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/92 (22%), Positives = 45/92 (48%), Gaps = 8/92 (8%)
Query: 484 VRGSDMFQGFCIDVFTAAVNLLPYAVPYQFVAFGDGHKNPS------YTQLVDSITTGVF 537
+ G++ ++G+C+D+ AA Y+ GDG + +V + G
Sbjct: 26 LEGNERYEGYCVDL--AAEIAKHCGFKYKLTIVGDGKYGARDADTKIWNGMVGELVYGKA 83
Query: 538 DAVVGDITIVTNRTKIVDFSQPYAASGLVVVV 569
D + +TI R +++DFS+P+ + G+ +++
Sbjct: 84 DIAIAPLTITLVREEVIDFSKPFMSLGISIMI 115
Score = 38.9 bits (89), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 33/137 (24%), Positives = 58/137 (42%), Gaps = 11/137 (8%)
Query: 688 SPINGIESLRKSDDPIGY---QEGSFAEYYLSQELNISKSRLVALRT--PEDYAKALKDG 742
+PI E L K + I Y GS E++ ++ + +R+ P + + +G
Sbjct: 119 TPIESAEDLSKQTE-IAYGTLDSGSTKEFFRRSKIAVFDKMWTYMRSAEPSVFVRTAAEG 177
Query: 743 -----PGKGGVAAVVDERPYVELFLSSQCSFRIVGQEFTKSGWGFAFPRDSPLAVDLSSA 797
KG A +++ + C VG G+G A P+ S L ++ A
Sbjct: 178 VARVRKSKGKYAYLLESTMNEYIEQRKPCDTMKVGGNLDSKGYGIATPKGSSLGNAVNLA 237
Query: 798 ILELAENGDLQRIHDKW 814
+L+L E G L ++ +KW
Sbjct: 238 VLKLNEQGLLDKLKNKW 254
>pdb|2I3V|A Chain A, Measurement Of Conformational Changes Accompanying
Desensitization In An Ionotropic Glutamate Receptor:
Structure Of G725c Mutant
pdb|2I3V|B Chain B, Measurement Of Conformational Changes Accompanying
Desensitization In An Ionotropic Glutamate Receptor:
Structure Of G725c Mutant
pdb|2I3V|C Chain C, Measurement Of Conformational Changes Accompanying
Desensitization In An Ionotropic Glutamate Receptor:
Structure Of G725c Mutant
pdb|2I3V|D Chain D, Measurement Of Conformational Changes Accompanying
Desensitization In An Ionotropic Glutamate Receptor:
Structure Of G725c Mutant
Length = 259
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/92 (22%), Positives = 45/92 (48%), Gaps = 8/92 (8%)
Query: 484 VRGSDMFQGFCIDVFTAAVNLLPYAVPYQFVAFGDGH------KNPSYTQLVDSITTGVF 537
+ G++ ++G+C+D+ AA Y+ GDG + +V + G
Sbjct: 24 LEGNERYEGYCVDL--AAEIAKHCGFKYKLTIVGDGKYGARDADTKIWNGMVGELVYGKA 81
Query: 538 DAVVGDITIVTNRTKIVDFSQPYAASGLVVVV 569
D + +TI R +++DFS+P+ + G+ +++
Sbjct: 82 DIAIAPLTITLVREEVIDFSKPFMSLGISIMI 113
Score = 38.9 bits (89), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 33/137 (24%), Positives = 58/137 (42%), Gaps = 11/137 (8%)
Query: 688 SPINGIESLRKSDDPIGY---QEGSFAEYYLSQELNISKSRLVALRT--PEDYAKALKDG 742
+PI E L K + I Y GS E++ ++ + +R+ P + + +G
Sbjct: 117 TPIESAEDLSKQTE-IAYGTLDSGSTKEFFRRSKIAVFDKMWTYMRSAEPSVFVRTTAEG 175
Query: 743 -----PGKGGVAAVVDERPYVELFLSSQCSFRIVGQEFTKSGWGFAFPRDSPLAVDLSSA 797
KG A +++ + C VG G+G A P+ S L ++ A
Sbjct: 176 VARVRKSKGKYAYLLESTMNEYIEQRKPCDTMKVGCNLDSKGYGIATPKGSSLGNAVNLA 235
Query: 798 ILELAENGDLQRIHDKW 814
+L+L E G L ++ +KW
Sbjct: 236 VLKLNEQGLLDKLKNKW 252
>pdb|1FW0|A Chain A, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
In Complex With Kainate At 2.0 A Resolution
pdb|1FTJ|A Chain A, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
In Complex With Glutamate At 1.9 Resolution
pdb|1FTJ|B Chain B, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
In Complex With Glutamate At 1.9 Resolution
pdb|1FTJ|C Chain C, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
In Complex With Glutamate At 1.9 Resolution
pdb|1FTL|A Chain A, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
In Complex With The Antagonist Dnqx At 1.8 A Resolution
pdb|1FTL|B Chain B, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
In Complex With The Antagonist Dnqx At 1.8 A Resolution
pdb|1FTM|A Chain A, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
In Complex With Ampa At 1.7 Resolution
pdb|1FTM|B Chain B, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
In Complex With Ampa At 1.7 Resolution
pdb|1FTM|C Chain C, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
In Complex With Ampa At 1.7 Resolution
pdb|1FTO|A Chain A, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
In The Apo State At 2.0 A Resolution
pdb|1FTO|B Chain B, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
In The Apo State At 2.0 A Resolution
pdb|1M5B|A Chain A, X-Ray Structure Of The Glur2 Ligand Binding Core (S1s2j)
In Complex With 2-Me-Tet-Ampa At 1.85 A Resolution.
pdb|1M5B|B Chain B, X-Ray Structure Of The Glur2 Ligand Binding Core (S1s2j)
In Complex With 2-Me-Tet-Ampa At 1.85 A Resolution.
pdb|1M5B|C Chain C, X-Ray Structure Of The Glur2 Ligand Binding Core (S1s2j)
In Complex With 2-Me-Tet-Ampa At 1.85 A Resolution.
pdb|1M5C|A Chain A, X-Ray Structure Of The Glur2 Ligand Binding Core (S1s2j)
In Complex With Br-Hibo At 1.65 A Resolution
pdb|1M5E|A Chain A, X-Ray Structure Of The Glur2 Ligand Binding Core (S1s2j)
In Complex With Acpa At 1.46 A Resolution
pdb|1M5E|B Chain B, X-Ray Structure Of The Glur2 Ligand Binding Core (S1s2j)
In Complex With Acpa At 1.46 A Resolution
pdb|1M5E|C Chain C, X-Ray Structure Of The Glur2 Ligand Binding Core (S1s2j)
In Complex With Acpa At 1.46 A Resolution
pdb|1MM6|A Chain A, Crystal Structure Of The Glur2 Ligand Binding Core (s1s2j)
In Complex With Quisqualate In A Non Zinc Crystal Form
At 2.15 Angstroms Resolution
pdb|1MM6|B Chain B, Crystal Structure Of The Glur2 Ligand Binding Core (s1s2j)
In Complex With Quisqualate In A Non Zinc Crystal Form
At 2.15 Angstroms Resolution
pdb|1MM7|A Chain A, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
In Complex With Quisqualate In A Zinc Crystal Form At
1.65 Angstroms Resolution
pdb|1MM7|B Chain B, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
In Complex With Quisqualate In A Zinc Crystal Form At
1.65 Angstroms Resolution
pdb|1MM7|C Chain C, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
In Complex With Quisqualate In A Zinc Crystal Form At
1.65 Angstroms Resolution
pdb|1N0T|A Chain A, X-Ray Structure Of The Glur2 Ligand-Binding Core (S1s2j)
In Complex With The Antagonist (S)-Atpo At 2.1 A
Resolution.
pdb|1N0T|B Chain B, X-Ray Structure Of The Glur2 Ligand-Binding Core (S1s2j)
In Complex With The Antagonist (S)-Atpo At 2.1 A
Resolution.
pdb|1N0T|C Chain C, X-Ray Structure Of The Glur2 Ligand-Binding Core (S1s2j)
In Complex With The Antagonist (S)-Atpo At 2.1 A
Resolution.
pdb|1N0T|D Chain D, X-Ray Structure Of The Glur2 Ligand-Binding Core (S1s2j)
In Complex With The Antagonist (S)-Atpo At 2.1 A
Resolution.
pdb|1NNK|A Chain A, X-Ray Structure Of The Glur2 Ligand-Binding Core (S1s2j)
In Complex With (S)-Atpa At 1.85 A Resolution.
Crystallization With Zinc Ions.
pdb|1NNP|A Chain A, X-Ray Structure Of The Glur2 Ligand-Binding Core (S1s2j)
In Complex With (S)-Atpa At 1.9 A Resolution.
Crystallization Without Zinc Ions.
pdb|1NNP|B Chain B, X-Ray Structure Of The Glur2 Ligand-Binding Core (S1s2j)
In Complex With (S)-Atpa At 1.9 A Resolution.
Crystallization Without Zinc Ions.
pdb|1MS7|A Chain A, X-Ray Structure Of The Glur2 Ligand-Binding Core (S1s2j)
In Complex With (S)-Des-Me-Ampa At 1.97 A Resolution,
Crystallization In The Presence Of Zinc Acetate
pdb|1MS7|B Chain B, X-Ray Structure Of The Glur2 Ligand-Binding Core (S1s2j)
In Complex With (S)-Des-Me-Ampa At 1.97 A Resolution,
Crystallization In The Presence Of Zinc Acetate
pdb|1MS7|C Chain C, X-Ray Structure Of The Glur2 Ligand-Binding Core (S1s2j)
In Complex With (S)-Des-Me-Ampa At 1.97 A Resolution,
Crystallization In The Presence Of Zinc Acetate
pdb|1MXU|A Chain A, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
In Complex With Bromo-Willardiine (Control For The
Crystal Titration Experiments)
pdb|1MXU|B Chain B, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
In Complex With Bromo-Willardiine (Control For The
Crystal Titration Experiments)
pdb|1MXU|C Chain C, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
In Complex With Bromo-Willardiine (Control For The
Crystal Titration Experiments)
pdb|1MXV|A Chain A, Crystal Titration Experiments (Ampa Co-Crystals Soaked In
10 Mm Brw)
pdb|1MXV|B Chain B, Crystal Titration Experiments (Ampa Co-Crystals Soaked In
10 Mm Brw)
pdb|1MXV|C Chain C, Crystal Titration Experiments (Ampa Co-Crystals Soaked In
10 Mm Brw)
pdb|1MXW|A Chain A, Crystal Titration Experiments (Ampa Co-Crystals Soaked In
1 Mm Brw)
pdb|1MXW|B Chain B, Crystal Titration Experiments (Ampa Co-Crystals Soaked In
1 Mm Brw)
pdb|1MXW|C Chain C, Crystal Titration Experiments (Ampa Co-Crystals Soaked In
1 Mm Brw)
pdb|1MXX|A Chain A, Crystal Titration Experiments (Ampa Co-Crystals Soaked In
100 Um Brw)
pdb|1MXX|B Chain B, Crystal Titration Experiments (Ampa Co-Crystals Soaked In
100 Um Brw)
pdb|1MXX|C Chain C, Crystal Titration Experiments (Ampa Co-Crystals Soaked In
100 Um Brw)
pdb|1MXY|A Chain A, Crystal Titration Experiments (Ampa Co-Crystals Soaked In
10 Um Brw)
pdb|1MXY|B Chain B, Crystal Titration Experiments (Ampa Co-Crystals Soaked In
10 Um Brw)
pdb|1MXY|C Chain C, Crystal Titration Experiments (Ampa Co-Crystals Soaked In
10 Um Brw)
pdb|1MXZ|A Chain A, Crystal Titration Experiments (ampa Co-crystals Soaked In
1 Um Brw)
pdb|1MXZ|B Chain B, Crystal Titration Experiments (ampa Co-crystals Soaked In
1 Um Brw)
pdb|1MXZ|C Chain C, Crystal Titration Experiments (ampa Co-crystals Soaked In
1 Um Brw)
pdb|1MY0|A Chain A, Crystal Titration Experiments (Ampa Co-Crystals Soaked In
100 Nm Brw)
pdb|1MY0|B Chain B, Crystal Titration Experiments (Ampa Co-Crystals Soaked In
100 Nm Brw)
pdb|1MY0|C Chain C, Crystal Titration Experiments (Ampa Co-Crystals Soaked In
100 Nm Brw)
pdb|1MY1|A Chain A, Crystal Titration Experiments (Ampa Co-Crystals Soaked In
10 Nm Brw)
pdb|1MY1|B Chain B, Crystal Titration Experiments (Ampa Co-Crystals Soaked In
10 Nm Brw)
pdb|1MY1|C Chain C, Crystal Titration Experiments (Ampa Co-Crystals Soaked In
10 Nm Brw)
pdb|1MY2|A Chain A, Crystal Titration Experiment (Ampa Complex Control)
pdb|1MY2|B Chain B, Crystal Titration Experiment (Ampa Complex Control)
pdb|1MY2|C Chain C, Crystal Titration Experiment (Ampa Complex Control)
pdb|1MY3|A Chain A, Crystal Structure Of Glutamate Receptor Ligand-Binding
Core In Complex With Bromo-Willardiine In The Zn Crystal
Form
pdb|1MY3|B Chain B, Crystal Structure Of Glutamate Receptor Ligand-Binding
Core In Complex With Bromo-Willardiine In The Zn Crystal
Form
pdb|1MY3|C Chain C, Crystal Structure Of Glutamate Receptor Ligand-Binding
Core In Complex With Bromo-Willardiine In The Zn Crystal
Form
pdb|1MY4|A Chain A, Crystal Structure Of Glutamate Receptor Ligand-Binding
Core In Complex With Iodo-Willardiine In The Zn Crystal
Form
pdb|1MY4|B Chain B, Crystal Structure Of Glutamate Receptor Ligand-Binding
Core In Complex With Iodo-Willardiine In The Zn Crystal
Form
pdb|1MY4|C Chain C, Crystal Structure Of Glutamate Receptor Ligand-Binding
Core In Complex With Iodo-Willardiine In The Zn Crystal
Form
pdb|1MQG|A Chain A, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
In Complex With Iodo-Willardiine At 2.15 Angstroms
Resolution
pdb|1MQG|B Chain B, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
In Complex With Iodo-Willardiine At 2.15 Angstroms
Resolution
pdb|1MQI|A Chain A, Crystal Structure Of The Glur2 Ligand Binding Core (s1s2j)
In Complex With Fluoro-willardiine At 1.35 Angstroms
Resolution
pdb|1MQJ|A Chain A, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
In Complex With Willardiine At 1.65 Angstroms Resolution
pdb|1SYH|A Chain A, X-ray Structure Of The Glur2 Ligand-binding Core (s1s2j)
In Complex With (s)-cpw399 At 1.85 A Resolution.
pdb|1WVJ|A Chain A, Exploring The Glur2 Ligand-Binding Core In Complex With
The Bicyclic Ampa Analogue (S)-4-Ahcp
pdb|2AIX|A Chain A, X-Ray Structure Of The Glur2 Ligand-Binding Core (S1s2j)
In Complex With (S)-Thio-Atpa At 2.2 A Resolution.
pdb|2AL4|A Chain A, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
In Complex With Quisqualate And Cx614.
pdb|2AL4|B Chain B, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
In Complex With Quisqualate And Cx614.
pdb|2AL4|C Chain C, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
In Complex With Quisqualate And Cx614.
pdb|2AL4|D Chain D, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
In Complex With Quisqualate And Cx614.
pdb|2AL4|E Chain E, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
In Complex With Quisqualate And Cx614.
pdb|2AL4|F Chain F, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
In Complex With Quisqualate And Cx614.
pdb|2AL5|A Chain A, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
In Complex With Fluoro-Willardiine And Aniracetam
pdb|2AL5|B Chain B, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
In Complex With Fluoro-Willardiine And Aniracetam
pdb|2CMO|A Chain A, The Structure Of A Mixed Glur2 Ligand-Binding Core Dimer
In Complex With (S)-Glutamate And The Antagonist
(S)-Ns1209
pdb|2P2A|A Chain A, X-Ray Structure Of The Glur2 Ligand Binding Core (S1s2j)
In Complex With 2-Bn-Tet-Ampa At 2.26a Resolution
pdb|2P2A|B Chain B, X-Ray Structure Of The Glur2 Ligand Binding Core (S1s2j)
In Complex With 2-Bn-Tet-Ampa At 2.26a Resolution
pdb|3BKI|P Chain P, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
In Complex With Fqx At 1.87 Angstroms
pdb|3BKI|B Chain B, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
In Complex With Fqx At 1.87 Angstroms
pdb|3BKI|C Chain C, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
In Complex With Fqx At 1.87 Angstroms
pdb|3BKI|D Chain D, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
In Complex With Fqx At 1.87 Angstroms
pdb|3BFU|A Chain A, Structure Of The Ligand-Binding Core Of Glur2 In Complex
With The Agonist (R)-Tdpa At 1.95 A Resolution
pdb|3BFU|B Chain B, Structure Of The Ligand-Binding Core Of Glur2 In Complex
With The Agonist (R)-Tdpa At 1.95 A Resolution
pdb|3BFU|C Chain C, Structure Of The Ligand-Binding Core Of Glur2 In Complex
With The Agonist (R)-Tdpa At 1.95 A Resolution
pdb|3BFU|D Chain D, Structure Of The Ligand-Binding Core Of Glur2 In Complex
With The Agonist (R)-Tdpa At 1.95 A Resolution
pdb|3BFT|A Chain A, Structure Of The Ligand-binding Core Of Glur2 In Complex
With The Agonist (s)-tdpa At 2.25 A Resolution
pdb|3BFT|B Chain B, Structure Of The Ligand-binding Core Of Glur2 In Complex
With The Agonist (s)-tdpa At 2.25 A Resolution
pdb|3BFT|C Chain C, Structure Of The Ligand-binding Core Of Glur2 In Complex
With The Agonist (s)-tdpa At 2.25 A Resolution
pdb|2CMO|B Chain B, The Structure Of A Mixed Glur2 Ligand-Binding Core Dimer
In Complex With (S)-Glutamate And The Antagonist
(S)-Ns1209
pdb|3TZA|A Chain A, Crystal Structure Of The Glua2 Ligand-Binding Domain
(S1s2j) In Complex With The Antagonist
(S)-2-Amino-3-(2-(2-Carboxyethyl)-5-
Chloro-4-Nitrophenyl)propionic Acid At 1.9a Resolution
pdb|3TZA|B Chain B, Crystal Structure Of The Glua2 Ligand-Binding Domain
(S1s2j) In Complex With The Antagonist
(S)-2-Amino-3-(2-(2-Carboxyethyl)-5-
Chloro-4-Nitrophenyl)propionic Acid At 1.9a Resolution
pdb|4G8M|A Chain A, Crystal Structure Of The Glua2 Ligand-Binding Domain
(S1s2j) In Complex With The Agonist Cbg-Iv At 2.05a
Resolution
pdb|4G8M|B Chain B, Crystal Structure Of The Glua2 Ligand-Binding Domain
(S1s2j) In Complex With The Agonist Cbg-Iv At 2.05a
Resolution
Length = 263
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/92 (22%), Positives = 45/92 (48%), Gaps = 8/92 (8%)
Query: 484 VRGSDMFQGFCIDVFTAAVNLLPYAVPYQFVAFGDGHKNPS------YTQLVDSITTGVF 537
+ G++ ++G+C+D+ AA Y+ GDG + +V + G
Sbjct: 26 LEGNERYEGYCVDL--AAEIAKHCGFKYKLTIVGDGKYGARDADTKIWNGMVGELVYGKA 83
Query: 538 DAVVGDITIVTNRTKIVDFSQPYAASGLVVVV 569
D + +TI R +++DFS+P+ + G+ +++
Sbjct: 84 DIAIAPLTITLVREEVIDFSKPFMSLGISIMI 115
Score = 38.9 bits (89), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 33/137 (24%), Positives = 58/137 (42%), Gaps = 11/137 (8%)
Query: 688 SPINGIESLRKSDDPIGY---QEGSFAEYYLSQELNISKSRLVALRT--PEDYAKALKDG 742
+PI E L K + I Y GS E++ ++ + +R+ P + + +G
Sbjct: 119 TPIESAEDLSKQTE-IAYGTLDSGSTKEFFRRSKIAVFDKMWTYMRSAEPSVFVRTTAEG 177
Query: 743 -----PGKGGVAAVVDERPYVELFLSSQCSFRIVGQEFTKSGWGFAFPRDSPLAVDLSSA 797
KG A +++ + C VG G+G A P+ S L ++ A
Sbjct: 178 VARVRKSKGKYAYLLESTMNEYIEQRKPCDTMKVGGNLDSKGYGIATPKGSSLGNAVNLA 237
Query: 798 ILELAENGDLQRIHDKW 814
+L+L E G L ++ +KW
Sbjct: 238 VLKLNEQGLLDKLKNKW 254
>pdb|3IJO|B Chain B, Crystal Structure Of The Ampa Subunit Glur2 Bound To The
Allosteric Modulator, Althiazide
pdb|3IJO|E Chain E, Crystal Structure Of The Ampa Subunit Glur2 Bound To The
Allosteric Modulator, Althiazide
pdb|3IJO|H Chain H, Crystal Structure Of The Ampa Subunit Glur2 Bound To The
Allosteric Modulator, Althiazide
pdb|3IJX|B Chain B, Crystal Structure Of The Ampa Subunit Glur2 Bound To The
Allosteric Modulator, Hydrochlorothiazide
pdb|3IJX|D Chain D, Crystal Structure Of The Ampa Subunit Glur2 Bound To The
Allosteric Modulator, Hydrochlorothiazide
pdb|3IJX|H Chain H, Crystal Structure Of The Ampa Subunit Glur2 Bound To The
Allosteric Modulator, Hydrochlorothiazide
pdb|3IK6|B Chain B, Crystal Structure Of The Ampa Subunit Glur2 Bound To The
Allosteric Modulator, Chlorothiazide
pdb|3IK6|E Chain E, Crystal Structure Of The Ampa Subunit Glur2 Bound To The
Allosteric Modulator, Chlorothiazide
pdb|3IK6|H Chain H, Crystal Structure Of The Ampa Subunit Glur2 Bound To The
Allosteric Modulator, Chlorothiazide
pdb|3IL1|B Chain B, Crystal Structure Of The Ampa Subunit Glur2 Bound To The
Allosteric Modulator, Idra-21
pdb|3IL1|E Chain E, Crystal Structure Of The Ampa Subunit Glur2 Bound To The
Allosteric Modulator, Idra-21
pdb|3IL1|H Chain H, Crystal Structure Of The Ampa Subunit Glur2 Bound To The
Allosteric Modulator, Idra-21
pdb|3ILT|B Chain B, Crystal Structure Of The Ampa Subunit Glur2 Bound To The
Allosteric Modulator, Trichlormethiazide
pdb|3ILT|E Chain E, Crystal Structure Of The Ampa Subunit Glur2 Bound To The
Allosteric Modulator, Trichlormethiazide
pdb|3ILT|H Chain H, Crystal Structure Of The Ampa Subunit Glur2 Bound To The
Allosteric Modulator, Trichlormethiazide
pdb|3ILU|B Chain B, Crystal Structure Of The Ampa Subunit Glur2 Bound To The
Allosteric Modulator, Hydroflumethiazide
pdb|3ILU|E Chain E, Crystal Structure Of The Ampa Subunit Glur2 Bound To The
Allosteric Modulator, Hydroflumethiazide
pdb|3ILU|H Chain H, Crystal Structure Of The Ampa Subunit Glur2 Bound To The
Allosteric Modulator, Hydroflumethiazide
pdb|3LSF|B Chain B, Piracetam Bound To The Ligand Binding Domain Of Glua2
pdb|3LSF|E Chain E, Piracetam Bound To The Ligand Binding Domain Of Glua2
pdb|3LSF|H Chain H, Piracetam Bound To The Ligand Binding Domain Of Glua2
Length = 258
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/92 (22%), Positives = 45/92 (48%), Gaps = 8/92 (8%)
Query: 484 VRGSDMFQGFCIDVFTAAVNLLPYAVPYQFVAFGDGHKNPS------YTQLVDSITTGVF 537
+ G++ ++G+C+D+ AA Y+ GDG + +V + G
Sbjct: 23 LEGNERYEGYCVDL--AAEIAKHCGFKYKLTIVGDGKYGARDADTKIWNGMVGELVYGKA 80
Query: 538 DAVVGDITIVTNRTKIVDFSQPYAASGLVVVV 569
D + +TI R +++DFS+P+ + G+ +++
Sbjct: 81 DIAIAPLTITLVREEVIDFSKPFMSLGISIMI 112
Score = 40.0 bits (92), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 33/137 (24%), Positives = 59/137 (43%), Gaps = 11/137 (8%)
Query: 688 SPINGIESLRKSDDPIGY---QEGSFAEYYLSQELNISKSRLVALRT--PEDYAKALKDG 742
+PI E L K + I Y GS E++ ++ + +R+ P + + +G
Sbjct: 116 TPIESAEDLSKQTE-IAYGTLDSGSTKEFFRRSKIAVFDKMWTYMRSAEPSVFVRTTAEG 174
Query: 743 -----PGKGGVAAVVDERPYVELFLSSQCSFRIVGQEFTKSGWGFAFPRDSPLAVDLSSA 797
KG A +++ + C VG G+G A P+ S L ++ A
Sbjct: 175 VARVRKSKGKYAYLLESTMNEYIEQRKPCDTMKVGGNLDSKGYGIATPKGSSLGNAVNLA 234
Query: 798 ILELAENGDLQRIHDKW 814
+L+L+E G L ++ +KW
Sbjct: 235 VLKLSEQGLLDKLKNKW 251
>pdb|1MQD|A Chain A, X-Ray Structure Of The Glur2 Ligand-Binding Core (S1s2j)
In Complex With (S)-Des-Me-Ampa At 1.46 A Resolution.
Crystallization In The Presence Of Lithium Sulfate.
pdb|1MQD|B Chain B, X-Ray Structure Of The Glur2 Ligand-Binding Core (S1s2j)
In Complex With (S)-Des-Me-Ampa At 1.46 A Resolution.
Crystallization In The Presence Of Lithium Sulfate.
pdb|1MQD|C Chain C, X-Ray Structure Of The Glur2 Ligand-Binding Core (S1s2j)
In Complex With (S)-Des-Me-Ampa At 1.46 A Resolution.
Crystallization In The Presence Of Lithium Sulfate.
pdb|1MQD|D Chain D, X-Ray Structure Of The Glur2 Ligand-Binding Core (S1s2j)
In Complex With (S)-Des-Me-Ampa At 1.46 A Resolution.
Crystallization In The Presence Of Lithium Sulfate.
pdb|3B7D|A Chain A, Crystal Structure Of The Glur2 Ligand Binding Core
(Hs1s2j) In Complex With Cnqx At 2.5 A Resolution
pdb|3B7D|B Chain B, Crystal Structure Of The Glur2 Ligand Binding Core
(Hs1s2j) In Complex With Cnqx At 2.5 A Resolution
pdb|3B7D|C Chain C, Crystal Structure Of The Glur2 Ligand Binding Core
(Hs1s2j) In Complex With Cnqx At 2.5 A Resolution
pdb|3B7D|D Chain D, Crystal Structure Of The Glur2 Ligand Binding Core
(Hs1s2j) In Complex With Cnqx At 2.5 A Resolution
pdb|3B7D|E Chain E, Crystal Structure Of The Glur2 Ligand Binding Core
(Hs1s2j) In Complex With Cnqx At 2.5 A Resolution
pdb|3B7D|F Chain F, Crystal Structure Of The Glur2 Ligand Binding Core
(Hs1s2j) In Complex With Cnqx At 2.5 A Resolution
pdb|3B7D|G Chain G, Crystal Structure Of The Glur2 Ligand Binding Core
(Hs1s2j) In Complex With Cnqx At 2.5 A Resolution
pdb|3B7D|H Chain H, Crystal Structure Of The Glur2 Ligand Binding Core
(Hs1s2j) In Complex With Cnqx At 2.5 A Resolution
Length = 261
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/92 (22%), Positives = 45/92 (48%), Gaps = 8/92 (8%)
Query: 484 VRGSDMFQGFCIDVFTAAVNLLPYAVPYQFVAFGDGHKNPS------YTQLVDSITTGVF 537
+ G++ ++G+C+D+ AA Y+ GDG + +V + G
Sbjct: 26 LEGNERYEGYCVDL--AAEIAKHCGFKYKLTIVGDGKYGARDADTKIWNGMVGELVYGKA 83
Query: 538 DAVVGDITIVTNRTKIVDFSQPYAASGLVVVV 569
D + +TI R +++DFS+P+ + G+ +++
Sbjct: 84 DIAIAPLTITLVREEVIDFSKPFMSLGISIMI 115
Score = 38.9 bits (89), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 33/137 (24%), Positives = 58/137 (42%), Gaps = 11/137 (8%)
Query: 688 SPINGIESLRKSDDPIGY---QEGSFAEYYLSQELNISKSRLVALRT--PEDYAKALKDG 742
+PI E L K + I Y GS E++ ++ + +R+ P + + +G
Sbjct: 119 TPIESAEDLSKQTE-IAYGTLDSGSTKEFFRRSKIAVFDKMWTYMRSAEPSVFVRTTAEG 177
Query: 743 -----PGKGGVAAVVDERPYVELFLSSQCSFRIVGQEFTKSGWGFAFPRDSPLAVDLSSA 797
KG A +++ + C VG G+G A P+ S L ++ A
Sbjct: 178 VARVRKSKGKYAYLLESTMNEYIEQRKPCDTMKVGGNLDSKGYGIATPKGSSLGNAVNLA 237
Query: 798 ILELAENGDLQRIHDKW 814
+L+L E G L ++ +KW
Sbjct: 238 VLKLNEQGLLDKLKNKW 254
>pdb|2XX7|A Chain A, Crystal Structure Of
1-(4-(1-Pyrrolidinylcarbonyl)phenyl)-3-
(Trifluoromethyl)-4,5,6,7-Tetrahydro-1h-Indazole In
Complex With The Ligand Binding Domain Of The Rat Glua2
Receptor And Glutamate At 2.2a Resolution.
pdb|2XX7|B Chain B, Crystal Structure Of
1-(4-(1-Pyrrolidinylcarbonyl)phenyl)-3-
(Trifluoromethyl)-4,5,6,7-Tetrahydro-1h-Indazole In
Complex With The Ligand Binding Domain Of The Rat Glua2
Receptor And Glutamate At 2.2a Resolution.
pdb|2XX7|C Chain C, Crystal Structure Of
1-(4-(1-Pyrrolidinylcarbonyl)phenyl)-3-
(Trifluoromethyl)-4,5,6,7-Tetrahydro-1h-Indazole In
Complex With The Ligand Binding Domain Of The Rat Glua2
Receptor And Glutamate At 2.2a Resolution
Length = 291
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/92 (22%), Positives = 45/92 (48%), Gaps = 8/92 (8%)
Query: 484 VRGSDMFQGFCIDVFTAAVNLLPYAVPYQFVAFGDGHKNPS------YTQLVDSITTGVF 537
+ G++ ++G+C+D+ AA Y+ GDG + +V + G
Sbjct: 55 LEGNERYEGYCVDL--AAEIAKHCGFKYKLTIVGDGKYGARDADTKIWNGMVGELVYGKA 112
Query: 538 DAVVGDITIVTNRTKIVDFSQPYAASGLVVVV 569
D + +TI R +++DFS+P+ + G+ +++
Sbjct: 113 DIAIAPLTITLVREEVIDFSKPFMSLGISIMI 144
Score = 40.0 bits (92), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 33/137 (24%), Positives = 59/137 (43%), Gaps = 11/137 (8%)
Query: 688 SPINGIESLRKSDDPIGY---QEGSFAEYYLSQELNISKSRLVALRT--PEDYAKALKDG 742
+PI E L K + I Y GS E++ ++ + +R+ P + + +G
Sbjct: 148 TPIESAEDLSKQTE-IAYGTLDSGSTKEFFRRSKIAVFDKMWTYMRSAEPSVFVRTTAEG 206
Query: 743 -----PGKGGVAAVVDERPYVELFLSSQCSFRIVGQEFTKSGWGFAFPRDSPLAVDLSSA 797
KG A +++ + C VG G+G A P+ S L ++ A
Sbjct: 207 VARVRKSKGKYAYLLESTMNEYIEQRKPCDTMKVGGNLDSKGYGIATPKGSSLGNAVNLA 266
Query: 798 ILELAENGDLQRIHDKW 814
+L+L+E G L ++ +KW
Sbjct: 267 VLKLSEQGLLDKLKNKW 283
>pdb|3PD8|A Chain A, X-Ray Structure Of The Ligand-Binding Core Of Glua2 In
Complex With (S)-7-Hpca At 2.5 A Resolution
pdb|3PD8|B Chain B, X-Ray Structure Of The Ligand-Binding Core Of Glua2 In
Complex With (S)-7-Hpca At 2.5 A Resolution
pdb|3PD8|C Chain C, X-Ray Structure Of The Ligand-Binding Core Of Glua2 In
Complex With (S)-7-Hpca At 2.5 A Resolution
Length = 261
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/92 (22%), Positives = 45/92 (48%), Gaps = 8/92 (8%)
Query: 484 VRGSDMFQGFCIDVFTAAVNLLPYAVPYQFVAFGDGHKNPS------YTQLVDSITTGVF 537
+ G++ ++G+C+D+ AA Y+ GDG + +V + G
Sbjct: 25 LEGNERYEGYCVDL--AAEIAKHCGFKYKLTIVGDGKYGARDADTKIWNGMVGELVYGKA 82
Query: 538 DAVVGDITIVTNRTKIVDFSQPYAASGLVVVV 569
D + +TI R +++DFS+P+ + G+ +++
Sbjct: 83 DIAIAPLTITLVREEVIDFSKPFMSLGISIMI 114
Score = 38.9 bits (89), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 33/137 (24%), Positives = 58/137 (42%), Gaps = 11/137 (8%)
Query: 688 SPINGIESLRKSDDPIGY---QEGSFAEYYLSQELNISKSRLVALRT--PEDYAKALKDG 742
+PI E L K + I Y GS E++ ++ + +R+ P + + +G
Sbjct: 118 TPIESAEDLSKQTE-IAYGTLDSGSTKEFFRRSKIAVFDKMWTYMRSAEPSVFVRTTAEG 176
Query: 743 -----PGKGGVAAVVDERPYVELFLSSQCSFRIVGQEFTKSGWGFAFPRDSPLAVDLSSA 797
KG A +++ + C VG G+G A P+ S L ++ A
Sbjct: 177 VARVRKSKGKYAYLLESTMNEYIEQRKPCDTMKVGGNLDSKGYGIATPKGSSLGNAVNLA 236
Query: 798 ILELAENGDLQRIHDKW 814
+L+L E G L ++ +KW
Sbjct: 237 VLKLNEQGLLDKLKNKW 253
>pdb|1M5D|A Chain A, X-ray Structure Of The Glur2 Ligand Binding Core (s1s2j-
Y702f) In Complex With Br-hibo At 1.73 A Resolution
pdb|1M5F|A Chain A, X-ray Structure Of The Glur2 Ligand Binding Core (s1s2j-
Y702f) In Complex With Acpa At 1.95 A Resolution
pdb|1M5F|B Chain B, X-ray Structure Of The Glur2 Ligand Binding Core (s1s2j-
Y702f) In Complex With Acpa At 1.95 A Resolution
pdb|1M5F|C Chain C, X-ray Structure Of The Glur2 Ligand Binding Core (s1s2j-
Y702f) In Complex With Acpa At 1.95 A Resolution
pdb|1SYI|A Chain A, X-Ray Structure Of The Y702f Mutant Of The Glur2 Ligand-
Binding Core (S1s2j) In Complex With (S)-Cpw399 At 2.1 A
Resolution.
pdb|1SYI|B Chain B, X-Ray Structure Of The Y702f Mutant Of The Glur2 Ligand-
Binding Core (S1s2j) In Complex With (S)-Cpw399 At 2.1 A
Resolution.
pdb|1XHY|A Chain A, X-ray Structure Of The Y702f Mutant Of The Glur2
Ligand-binding Core (s1s2j) In Complex With Kainate At
1.85 A Resolution
Length = 263
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/92 (22%), Positives = 45/92 (48%), Gaps = 8/92 (8%)
Query: 484 VRGSDMFQGFCIDVFTAAVNLLPYAVPYQFVAFGDGHKNPS------YTQLVDSITTGVF 537
+ G++ ++G+C+D+ AA Y+ GDG + +V + G
Sbjct: 26 LEGNERYEGYCVDL--AAEIAKHCGFKYKLTIVGDGKYGARDADTKIWNGMVGELVYGKA 83
Query: 538 DAVVGDITIVTNRTKIVDFSQPYAASGLVVVV 569
D + +TI R +++DFS+P+ + G+ +++
Sbjct: 84 DIAIAPLTITLVREEVIDFSKPFMSLGISIMI 115
Score = 38.9 bits (89), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 33/137 (24%), Positives = 58/137 (42%), Gaps = 11/137 (8%)
Query: 688 SPINGIESLRKSDDPIGY---QEGSFAEYYLSQELNISKSRLVALRT--PEDYAKALKDG 742
+PI E L K + I Y GS E++ ++ + +R+ P + + +G
Sbjct: 119 TPIESAEDLSKQTE-IAYGTLDSGSTKEFFRRSKIAVFDKMWTYMRSAEPSVFVRTTAEG 177
Query: 743 -----PGKGGVAAVVDERPYVELFLSSQCSFRIVGQEFTKSGWGFAFPRDSPLAVDLSSA 797
KG A +++ + C VG G+G A P+ S L ++ A
Sbjct: 178 VARVRKSKGKYAFLLESTMNEYIEQRKPCDTMKVGGNLDSKGYGIATPKGSSLGNAVNLA 237
Query: 798 ILELAENGDLQRIHDKW 814
+L+L E G L ++ +KW
Sbjct: 238 VLKLNEQGLLDKLKNKW 254
>pdb|3RNN|A Chain A, Crystal Structure Of Iglur2 Ligand Binding Domain With
Symmetric Sulfonamide Containing Potentiator
pdb|3RNN|B Chain B, Crystal Structure Of Iglur2 Ligand Binding Domain With
Symmetric Sulfonamide Containing Potentiator
pdb|3RNN|C Chain C, Crystal Structure Of Iglur2 Ligand Binding Domain With
Symmetric Sulfonamide Containing Potentiator
Length = 292
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/92 (22%), Positives = 45/92 (48%), Gaps = 8/92 (8%)
Query: 484 VRGSDMFQGFCIDVFTAAVNLLPYAVPYQFVAFGDGHKNPS------YTQLVDSITTGVF 537
+ G++ ++G+C+D+ AA Y+ GDG + +V + G
Sbjct: 39 LEGNERYEGYCVDL--AAEIAKHCGFKYKLTIVGDGKYGARDADTKIWNGMVGELVYGKA 96
Query: 538 DAVVGDITIVTNRTKIVDFSQPYAASGLVVVV 569
D + +TI R +++DFS+P+ + G+ +++
Sbjct: 97 DIAIAPLTITLVREEVIDFSKPFMSLGISIMI 128
Score = 38.1 bits (87), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 33/137 (24%), Positives = 58/137 (42%), Gaps = 11/137 (8%)
Query: 688 SPINGIESLRKSDDPIGY---QEGSFAEYYLSQELNISKSRLVALRT--PEDYAKALKDG 742
+PI E L K + I Y GS E++ ++ + +R+ P + + +G
Sbjct: 132 TPIESAEDLSKQTE-IAYGTLDSGSTKEFFRRSKIAVFDKMWTYMRSAEPSVFVRTTAEG 190
Query: 743 -----PGKGGVAAVVDERPYVELFLSSQCSFRIVGQEFTKSGWGFAFPRDSPLAVDLSSA 797
KG A +++ + C VG G+G A P+ S L ++ A
Sbjct: 191 VARVRKSKGKYAYLLESTMNEYIEQRKPCDTMKVGGNLDSKGYGIATPKGSSLGNAVNLA 250
Query: 798 ILELAENGDLQRIHDKW 814
+L+L E G L ++ +KW
Sbjct: 251 VLKLNEQGLLDKLKNKW 267
>pdb|3R7X|A Chain A, Crystal Structure Analysis Of A Quinazolinedione
Sulfonamide Bound To Human Glur2: A Novel Class Of
Competitive Ampa Receptor Antagonists With Oral Activity
pdb|3R7X|B Chain B, Crystal Structure Analysis Of A Quinazolinedione
Sulfonamide Bound To Human Glur2: A Novel Class Of
Competitive Ampa Receptor Antagonists With Oral Activity
pdb|3UA8|A Chain A, Crystal Structure Analysis Of A 6-Amino Quinazolinedione
Sulfonamide Bound To Human Glur2
Length = 263
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/92 (22%), Positives = 45/92 (48%), Gaps = 8/92 (8%)
Query: 484 VRGSDMFQGFCIDVFTAAVNLLPYAVPYQFVAFGDGHKNPS------YTQLVDSITTGVF 537
+ G++ ++G+C+D+ AA Y+ GDG + +V + G
Sbjct: 26 LEGNERYEGYCVDL--AAEIAKHCGFKYKLTIVGDGKYGARDADTKIWNGMVGELVYGKA 83
Query: 538 DAVVGDITIVTNRTKIVDFSQPYAASGLVVVV 569
D + +TI R +++DFS+P+ + G+ +++
Sbjct: 84 DIAIAPLTITLVREEVIDFSKPFMSLGISIMI 115
Score = 38.5 bits (88), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 33/137 (24%), Positives = 58/137 (42%), Gaps = 11/137 (8%)
Query: 688 SPINGIESLRKSDDPIGY---QEGSFAEYYLSQELNISKSRLVALRT--PEDYAKALKDG 742
+PI E L K + I Y GS E++ ++ + +R+ P + + +G
Sbjct: 119 TPIESAEDLSKQTE-IAYGTLDSGSTKEFFRRSKIAVFDKMWTYMRSAEPSVFVRTTAEG 177
Query: 743 -----PGKGGVAAVVDERPYVELFLSSQCSFRIVGQEFTKSGWGFAFPRDSPLAVDLSSA 797
KG A +++ + C VG G+G A P+ S L ++ A
Sbjct: 178 VARVRKSKGKYAYLLESTMNEYIEQRKPCDTMKVGGNLDSKGYGIATPKGSSLRNAVNLA 237
Query: 798 ILELAENGDLQRIHDKW 814
+L+L E G L ++ +KW
Sbjct: 238 VLKLNEQGLLDKLKNKW 254
>pdb|3H03|A Chain A, Crystal Structure Of The Binding Domain Of The Ampa
Subunit Glur2 Bound To Ubp277
pdb|3H03|B Chain B, Crystal Structure Of The Binding Domain Of The Ampa
Subunit Glur2 Bound To Ubp277
pdb|3H03|D Chain D, Crystal Structure Of The Binding Domain Of The Ampa
Subunit Glur2 Bound To Ubp277
pdb|3H03|G Chain G, Crystal Structure Of The Binding Domain Of The Ampa
Subunit Glur2 Bound To Ubp277
pdb|3H06|G Chain G, Crystal Structure Of The Binding Domain Of The Ampa
Subunit Glur2 Bound To The Willardiine Antagonist,
Ubp282
pdb|3H06|B Chain B, Crystal Structure Of The Binding Domain Of The Ampa
Subunit Glur2 Bound To The Willardiine Antagonist,
Ubp282
pdb|3H06|E Chain E, Crystal Structure Of The Binding Domain Of The Ampa
Subunit Glur2 Bound To The Willardiine Antagonist,
Ubp282
pdb|3H06|H Chain H, Crystal Structure Of The Binding Domain Of The Ampa
Subunit Glur2 Bound To The Willardiine Antagonist,
Ubp282
pdb|3H06|J Chain J, Crystal Structure Of The Binding Domain Of The Ampa
Subunit Glur2 Bound To The Willardiine Antagonist,
Ubp282
pdb|3H06|L Chain L, Crystal Structure Of The Binding Domain Of The Ampa
Subunit Glur2 Bound To The Willardiine Antagonist,
Ubp282
pdb|3H06|N Chain N, Crystal Structure Of The Binding Domain Of The Ampa
Subunit Glur2 Bound To The Willardiine Antagonist,
Ubp282
pdb|3H06|P Chain P, Crystal Structure Of The Binding Domain Of The Ampa
Subunit Glur2 Bound To The Willardiine Antagonist,
Ubp282
pdb|3LSL|A Chain A, Piracetam Bound To The Ligand Binding Domain Of Glua2
(Flop Form)
pdb|3LSL|D Chain D, Piracetam Bound To The Ligand Binding Domain Of Glua2
(Flop Form)
pdb|3LSL|G Chain G, Piracetam Bound To The Ligand Binding Domain Of Glua2
(Flop Form)
pdb|3M3L|A Chain A, Pepa Bound To The Ligand Binding Domain Of Glua2 (Flop
Form)
pdb|3M3L|D Chain D, Pepa Bound To The Ligand Binding Domain Of Glua2 (Flop
Form)
pdb|3M3L|G Chain G, Pepa Bound To The Ligand Binding Domain Of Glua2 (Flop
Form)
pdb|3RTF|B Chain B, Chlorowillardiine Bound To The Ligand Binding Domain Of
Glua2
pdb|3RTF|D Chain D, Chlorowillardiine Bound To The Ligand Binding Domain Of
Glua2
pdb|3RTF|F Chain F, Chlorowillardiine Bound To The Ligand Binding Domain Of
Glua2
pdb|3RTW|B Chain B, Nitrowillardiine Bound To The Ligand Binding Domain Of
Glua2
pdb|3RTW|D Chain D, Nitrowillardiine Bound To The Ligand Binding Domain Of
Glua2
pdb|3RTW|F Chain F, Nitrowillardiine Bound To The Ligand Binding Domain Of
Glua2
pdb|4GXS|B Chain B, Ligand Binding Domain Of Glua2 (AmpaGLUTAMATE RECEPTOR)
BOUND TO (-)- Kaitocephalin
pdb|4GXS|D Chain D, Ligand Binding Domain Of Glua2 (AmpaGLUTAMATE RECEPTOR)
BOUND TO (-)- Kaitocephalin
Length = 258
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/92 (22%), Positives = 45/92 (48%), Gaps = 8/92 (8%)
Query: 484 VRGSDMFQGFCIDVFTAAVNLLPYAVPYQFVAFGDGHKNPS------YTQLVDSITTGVF 537
+ G++ ++G+C+D+ AA Y+ GDG + +V + G
Sbjct: 23 LEGNERYEGYCVDL--AAEIAKHCGFKYKLTIVGDGKYGARDADTKIWNGMVGELVYGKA 80
Query: 538 DAVVGDITIVTNRTKIVDFSQPYAASGLVVVV 569
D + +TI R +++DFS+P+ + G+ +++
Sbjct: 81 DIAIAPLTITLVREEVIDFSKPFMSLGISIMI 112
Score = 38.9 bits (89), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 33/137 (24%), Positives = 58/137 (42%), Gaps = 11/137 (8%)
Query: 688 SPINGIESLRKSDDPIGY---QEGSFAEYYLSQELNISKSRLVALRT--PEDYAKALKDG 742
+PI E L K + I Y GS E++ ++ + +R+ P + + +G
Sbjct: 116 TPIESAEDLSKQTE-IAYGTLDSGSTKEFFRRSKIAVFDKMWTYMRSAEPSVFVRTTAEG 174
Query: 743 -----PGKGGVAAVVDERPYVELFLSSQCSFRIVGQEFTKSGWGFAFPRDSPLAVDLSSA 797
KG A +++ + C VG G+G A P+ S L ++ A
Sbjct: 175 VARVRKSKGKYAYLLESTMNEYIEQRKPCDTMKVGGNLDSKGYGIATPKGSSLGNAVNLA 234
Query: 798 ILELAENGDLQRIHDKW 814
+L+L E G L ++ +KW
Sbjct: 235 VLKLNEQGLLDKLKNKW 251
>pdb|2I3W|A Chain A, Measurement Of Conformational Changes Accompanying
Desensitization In An Ionotropic Glutamate Receptor:
Structure Of S729c Mutant
pdb|2I3W|B Chain B, Measurement Of Conformational Changes Accompanying
Desensitization In An Ionotropic Glutamate Receptor:
Structure Of S729c Mutant
Length = 259
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/92 (22%), Positives = 45/92 (48%), Gaps = 8/92 (8%)
Query: 484 VRGSDMFQGFCIDVFTAAVNLLPYAVPYQFVAFGDGHKNPS------YTQLVDSITTGVF 537
+ G++ ++G+C+D+ AA Y+ GDG + +V + G
Sbjct: 24 LEGNERYEGYCVDL--AAEIAKHCGFKYKLTIVGDGKYGARDADTKIWNGMVGELVYGKA 81
Query: 538 DAVVGDITIVTNRTKIVDFSQPYAASGLVVVV 569
D + +TI R +++DFS+P+ + G+ +++
Sbjct: 82 DIAIAPLTITLVREEVIDFSKPFMSLGISIMI 113
Score = 38.5 bits (88), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 33/137 (24%), Positives = 58/137 (42%), Gaps = 11/137 (8%)
Query: 688 SPINGIESLRKSDDPIGY---QEGSFAEYYLSQELNISKSRLVALRT--PEDYAKALKDG 742
+PI E L K + I Y GS E++ ++ + +R+ P + + +G
Sbjct: 117 TPIESAEDLSKQTE-IAYGTLDSGSTKEFFRRSKIAVFDKMWTYMRSAEPSVFVRTTAEG 175
Query: 743 -----PGKGGVAAVVDERPYVELFLSSQCSFRIVGQEFTKSGWGFAFPRDSPLAVDLSSA 797
KG A +++ + C VG G+G A P+ S L ++ A
Sbjct: 176 VARVRKSKGKYAYLLESTMNEYIEQRKPCDTMKVGGNLDCKGYGIATPKGSSLGNAVNLA 235
Query: 798 ILELAENGDLQRIHDKW 814
+L+L E G L ++ +KW
Sbjct: 236 VLKLNEQGLLDKLKNKW 252
>pdb|1MQH|A Chain A, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
In Complex With Bromo-Willardiine At 1.8 Angstroms
Resolution
Length = 263
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/92 (22%), Positives = 45/92 (48%), Gaps = 8/92 (8%)
Query: 484 VRGSDMFQGFCIDVFTAAVNLLPYAVPYQFVAFGDGHKNPS------YTQLVDSITTGVF 537
+ G++ ++G+C+D+ AA Y+ GDG + +V + G
Sbjct: 26 LEGNERYEGYCVDL--AAEIAKHCGFKYKLTIVGDGKYGARDADTKIWNGMVGELVYGKA 83
Query: 538 DAVVGDITIVTNRTKIVDFSQPYAASGLVVVV 569
D + +TI R +++DFS+P+ + G+ +++
Sbjct: 84 DIAIAPLTITLVREEVIDFSKPFMSLGISIMI 115
Score = 38.9 bits (89), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 33/137 (24%), Positives = 58/137 (42%), Gaps = 11/137 (8%)
Query: 688 SPINGIESLRKSDDPIGY---QEGSFAEYYLSQELNISKSRLVALRT--PEDYAKALKDG 742
+PI E L K + I Y GS E++ ++ + +R+ P + + +G
Sbjct: 119 TPIESAEDLSKQTE-IAYGTLDSGSTKEFFRRSKIAVFDKMWTYMRSAEPSVFVRTTAEG 177
Query: 743 -----PGKGGVAAVVDERPYVELFLSSQCSFRIVGQEFTKSGWGFAFPRDSPLAVDLSSA 797
KG A +++ + C VG G+G A P+ S L ++ A
Sbjct: 178 VARVRKSKGKYAYLLESTMNEYIEQRKPCDTMKVGGNLDSKGYGIATPKGSSLGNAVNLA 237
Query: 798 ILELAENGDLQRIHDKW 814
+L+L E G L ++ +KW
Sbjct: 238 VLKLNEQGLLDKLKNKW 254
>pdb|1P1N|A Chain A, Glur2 Ligand Binding Core (S1s2j) Mutant L650t In Complex
With Kainate
pdb|1P1O|A Chain A, Crystal Structure Of The Glur2 Ligand-Binding Core (S1s2j)
Mutant L650t In Complex With Quisqualate
pdb|1P1Q|A Chain A, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
L650t Mutant In Complex With Ampa
pdb|1P1Q|B Chain B, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
L650t Mutant In Complex With Ampa
pdb|1P1Q|C Chain C, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
L650t Mutant In Complex With Ampa
pdb|1P1U|A Chain A, Crystal Structure Of The Glur2 Ligand-Binding Core (S1s2j)
L650t Mutant In Complex With Ampa (Ammonium Sulfate
Crystal Form)
pdb|1P1U|B Chain B, Crystal Structure Of The Glur2 Ligand-Binding Core (S1s2j)
L650t Mutant In Complex With Ampa (Ammonium Sulfate
Crystal Form)
Length = 263
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/92 (22%), Positives = 45/92 (48%), Gaps = 8/92 (8%)
Query: 484 VRGSDMFQGFCIDVFTAAVNLLPYAVPYQFVAFGDGHKNPS------YTQLVDSITTGVF 537
+ G++ ++G+C+D+ AA Y+ GDG + +V + G
Sbjct: 26 LEGNERYEGYCVDL--AAEIAKHCGFKYKLTIVGDGKYGARDADTKIWNGMVGELVYGKA 83
Query: 538 DAVVGDITIVTNRTKIVDFSQPYAASGLVVVV 569
D + +TI R +++DFS+P+ + G+ +++
Sbjct: 84 DIAIAPLTITLVREEVIDFSKPFMSLGISIMI 115
Score = 39.3 bits (90), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 33/137 (24%), Positives = 58/137 (42%), Gaps = 11/137 (8%)
Query: 688 SPINGIESLRKSDDPIGY---QEGSFAEYYLSQELNISKSRLVALRT--PEDYAKALKDG 742
+PI E L K + I Y GS E++ ++ + +R+ P + + +G
Sbjct: 119 TPIESAEDLSKQTE-IAYGTTDSGSTKEFFRRSKIAVFDKMWTYMRSAEPSVFVRTTAEG 177
Query: 743 -----PGKGGVAAVVDERPYVELFLSSQCSFRIVGQEFTKSGWGFAFPRDSPLAVDLSSA 797
KG A +++ + C VG G+G A P+ S L ++ A
Sbjct: 178 VARVRKSKGKYAYLLESTMNEYIEQRKPCDTMKVGGNLDSKGYGIATPKGSSLGNAVNLA 237
Query: 798 ILELAENGDLQRIHDKW 814
+L+L E G L ++ +KW
Sbjct: 238 VLKLNEQGLLDKLKNKW 254
>pdb|1LBB|A Chain A, Crystal Structure Of The Glur2 Ligand Binding Domain
Mutant (s1s2j-n754d) In Complex With Kainate At 2.1 A
Resolution
Length = 263
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/92 (22%), Positives = 45/92 (48%), Gaps = 8/92 (8%)
Query: 484 VRGSDMFQGFCIDVFTAAVNLLPYAVPYQFVAFGDGHKNPS------YTQLVDSITTGVF 537
+ G++ ++G+C+D+ AA Y+ GDG + +V + G
Sbjct: 26 LEGNERYEGYCVDL--AAEIAKHCGFKYKLTIVGDGKYGARDADTKIWNGMVGELVYGKA 83
Query: 538 DAVVGDITIVTNRTKIVDFSQPYAASGLVVVV 569
D + +TI R +++DFS+P+ + G+ +++
Sbjct: 84 DIAIAPLTITLVREEVIDFSKPFMSLGISIMI 115
Score = 38.9 bits (89), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 33/137 (24%), Positives = 58/137 (42%), Gaps = 11/137 (8%)
Query: 688 SPINGIESLRKSDDPIGY---QEGSFAEYYLSQELNISKSRLVALRT--PEDYAKALKDG 742
+PI E L K + I Y GS E++ ++ + +R+ P + + +G
Sbjct: 119 TPIESAEDLSKQTE-IAYGTLDSGSTKEFFRRSKIAVFDKMWTYMRSAEPSVFVRTTAEG 177
Query: 743 -----PGKGGVAAVVDERPYVELFLSSQCSFRIVGQEFTKSGWGFAFPRDSPLAVDLSSA 797
KG A +++ + C VG G+G A P+ S L ++ A
Sbjct: 178 VARVRKSKGKYAYLLESTMNEYIEQRKPCDTMKVGGNLDSKGYGIATPKGSSLGNAVNLA 237
Query: 798 ILELAENGDLQRIHDKW 814
+L+L E G L ++ +KW
Sbjct: 238 VLKLDEQGLLDKLKNKW 254
>pdb|3DP6|A Chain A, Crystal Structure Of The Binding Domain Of The Ampa
Subunit Glur2 Bound To Glutamate
pdb|3DP6|B Chain B, Crystal Structure Of The Binding Domain Of The Ampa
Subunit Glur2 Bound To Glutamate
pdb|3DP6|C Chain C, Crystal Structure Of The Binding Domain Of The Ampa
Subunit Glur2 Bound To Glutamate
Length = 279
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/92 (22%), Positives = 45/92 (48%), Gaps = 8/92 (8%)
Query: 484 VRGSDMFQGFCIDVFTAAVNLLPYAVPYQFVAFGDGHKNPS------YTQLVDSITTGVF 537
+ G++ ++G+C+D+ AA Y+ GDG + +V + G
Sbjct: 42 LEGNERYEGYCVDL--AAEIAKHCGFKYKLTIVGDGKYGARDADTKIWNGMVGELVYGKA 99
Query: 538 DAVVGDITIVTNRTKIVDFSQPYAASGLVVVV 569
D + +TI R +++DFS+P+ + G+ +++
Sbjct: 100 DIAIAPLTITLVREEVIDFSKPFMSLGISIMI 131
Score = 38.9 bits (89), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 33/137 (24%), Positives = 58/137 (42%), Gaps = 11/137 (8%)
Query: 688 SPINGIESLRKSDDPIGY---QEGSFAEYYLSQELNISKSRLVALRT--PEDYAKALKDG 742
+PI E L K + I Y GS E++ ++ + +R+ P + + +G
Sbjct: 135 TPIESAEDLSKQTE-IAYGTLDSGSTKEFFRRSKIAVFDKMWTYMRSAEPSVFVRTTAEG 193
Query: 743 -----PGKGGVAAVVDERPYVELFLSSQCSFRIVGQEFTKSGWGFAFPRDSPLAVDLSSA 797
KG A +++ + C VG G+G A P+ S L ++ A
Sbjct: 194 VARVRKSKGKYAYLLESTMNEYIEQRKPCDTMKVGGNLDSKGYGIATPKGSSLGNAVNLA 253
Query: 798 ILELAENGDLQRIHDKW 814
+L+L E G L ++ +KW
Sbjct: 254 VLKLNEQGLLDKLKNKW 270
>pdb|2UXA|A Chain A, Crystal Structure Of The Glur2-Flip Ligand Binding Domain,
RG UNEDITED.
pdb|2UXA|B Chain B, Crystal Structure Of The Glur2-Flip Ligand Binding Domain,
RG UNEDITED.
pdb|2UXA|C Chain C, Crystal Structure Of The Glur2-Flip Ligand Binding Domain,
RG UNEDITED
Length = 261
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/92 (22%), Positives = 45/92 (48%), Gaps = 8/92 (8%)
Query: 484 VRGSDMFQGFCIDVFTAAVNLLPYAVPYQFVAFGDGHKNPS------YTQLVDSITTGVF 537
+ G++ ++G+C+D+ AA Y+ GDG + +V + G
Sbjct: 25 LEGNERYEGYCVDL--AAEIAKHCGFKYKLTIVGDGKYGARDADTKIWNGMVGELVYGKA 82
Query: 538 DAVVGDITIVTNRTKIVDFSQPYAASGLVVVV 569
D + +TI R +++DFS+P+ + G+ +++
Sbjct: 83 DIAIAPLTITLVREEVIDFSKPFMSLGISIMI 114
Score = 40.8 bits (94), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 33/137 (24%), Positives = 59/137 (43%), Gaps = 11/137 (8%)
Query: 688 SPINGIESLRKSDDPIGY---QEGSFAEYYLSQELNISKSRLVALRT--PEDYAKALKDG 742
+PI E L K + I Y GS E++ ++ + +R+ P + + +G
Sbjct: 118 TPIESAEDLSKQTE-IAYGTLDSGSTKEFFRRSKIAVFDKMWTYMRSAEPSVFVRTTAEG 176
Query: 743 -----PGKGGVAAVVDERPYVELFLSSQCSFRIVGQEFTKSGWGFAFPRDSPLAVDLSSA 797
KG A +++ + C VG G+G A P+ S L ++ A
Sbjct: 177 VARVRKSKGKYAYLLESTMNEYIEQRKPCDTMKVGGNLDSKGYGIATPKGSSLRTPVNLA 236
Query: 798 ILELAENGDLQRIHDKW 814
+L+L+E G L ++ +KW
Sbjct: 237 VLKLSEQGVLDKLKNKW 253
>pdb|1GR2|A Chain A, Structure Of A Glutamate Receptor Ligand Binding Core
(Glur2) Complexed With Kainate
pdb|1FTK|A Chain A, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2i)
In Complex With Kainate At 1.6 A Resolution
Length = 279
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/92 (22%), Positives = 45/92 (48%), Gaps = 8/92 (8%)
Query: 484 VRGSDMFQGFCIDVFTAAVNLLPYAVPYQFVAFGDGHKNPS------YTQLVDSITTGVF 537
+ G++ ++G+C+D+ AA Y+ GDG + +V + G
Sbjct: 38 LEGNERYEGYCVDL--AAEIAKHCGFKYKLTIVGDGKYGARDADTKIWNGMVGELVYGKA 95
Query: 538 DAVVGDITIVTNRTKIVDFSQPYAASGLVVVV 569
D + +TI R +++DFS+P+ + G+ +++
Sbjct: 96 DIAIAPLTITLVREEVIDFSKPFMSLGISIMI 127
Score = 38.5 bits (88), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 33/137 (24%), Positives = 58/137 (42%), Gaps = 11/137 (8%)
Query: 688 SPINGIESLRKSDDPIGY---QEGSFAEYYLSQELNISKSRLVALRT--PEDYAKALKDG 742
+PI E L K + I Y GS E++ ++ + +R+ P + + +G
Sbjct: 135 NPIESAEDLSKQTE-IAYGTLDSGSTKEFFRRSKIAVFDKMWTYMRSAEPSVFVRTTAEG 193
Query: 743 -----PGKGGVAAVVDERPYVELFLSSQCSFRIVGQEFTKSGWGFAFPRDSPLAVDLSSA 797
KG A +++ + C VG G+G A P+ S L ++ A
Sbjct: 194 VARVRKSKGKYAYLLESTMNEYIEQRKPCDTMKVGGNLDSKGYGIATPKGSSLGNAVNLA 253
Query: 798 ILELAENGDLQRIHDKW 814
+L+L E G L ++ +KW
Sbjct: 254 VLKLNEQGLLDKLKNKW 270
>pdb|3TDJ|A Chain A, Crystal Structure Of The Glua2 Ligand-Binding Domain
(S1s2j-L483y- N754s) In Complex With Glutamate And
Bpam-97 At 1.95 A Resolution
pdb|3TDJ|B Chain B, Crystal Structure Of The Glua2 Ligand-Binding Domain
(S1s2j-L483y- N754s) In Complex With Glutamate And
Bpam-97 At 1.95 A Resolution
pdb|3TKD|A Chain A, Crystal Structure Of The Glua2 Ligand-Binding Domain
(S1s2j-L483y- N754s) In Complex With Glutamate And
Cyclothiazide At 1.45 A Resolution
pdb|3TKD|B Chain B, Crystal Structure Of The Glua2 Ligand-Binding Domain
(S1s2j-L483y- N754s) In Complex With Glutamate And
Cyclothiazide At 1.45 A Resolution
Length = 263
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/92 (22%), Positives = 45/92 (48%), Gaps = 8/92 (8%)
Query: 484 VRGSDMFQGFCIDVFTAAVNLLPYAVPYQFVAFGDGHKNPS------YTQLVDSITTGVF 537
+ G++ ++G+C+D+ AA Y+ GDG + +V + G
Sbjct: 26 LEGNERYEGYCVDL--AAEIAKHCGFKYKLTIVGDGKYGARDADTKIWNGMVGELVYGKA 83
Query: 538 DAVVGDITIVTNRTKIVDFSQPYAASGLVVVV 569
D + +TI R +++DFS+P+ + G+ +++
Sbjct: 84 DIAIAPLTITYVREEVIDFSKPFMSLGISIMI 115
Score = 40.0 bits (92), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 33/137 (24%), Positives = 59/137 (43%), Gaps = 11/137 (8%)
Query: 688 SPINGIESLRKSDDPIGY---QEGSFAEYYLSQELNISKSRLVALRT--PEDYAKALKDG 742
+PI E L K + I Y GS E++ ++ + +R+ P + + +G
Sbjct: 119 TPIESAEDLSKQTE-IAYGTLDSGSTKEFFRRSKIAVFDKMWTYMRSAEPSVFVRTTAEG 177
Query: 743 -----PGKGGVAAVVDERPYVELFLSSQCSFRIVGQEFTKSGWGFAFPRDSPLAVDLSSA 797
KG A +++ + C VG G+G A P+ S L ++ A
Sbjct: 178 VARVRKSKGKYAYLLESTMNEYIEQRKPCDTMKVGGNLDSKGYGIATPKGSSLGNAVNLA 237
Query: 798 ILELAENGDLQRIHDKW 814
+L+L+E G L ++ +KW
Sbjct: 238 VLKLSEQGLLDKLKNKW 254
>pdb|3O28|A Chain A, Ligand-Binding Domain Of Glua2 (Flip) Ionotropic Glutamate
Receptor In Complex With An Allosteric Modulator
Length = 263
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/92 (22%), Positives = 45/92 (48%), Gaps = 8/92 (8%)
Query: 484 VRGSDMFQGFCIDVFTAAVNLLPYAVPYQFVAFGDGHKNPS------YTQLVDSITTGVF 537
+ G++ ++G+C+D+ AA Y+ GDG + +V + G
Sbjct: 26 LEGNERYEGYCVDL--AAEIAKHCGFKYKLTIVGDGKYGARDADTKIWNGMVGELVYGKA 83
Query: 538 DAVVGDITIVTNRTKIVDFSQPYAASGLVVVV 569
D + +TI R +++DFS+P+ + G+ +++
Sbjct: 84 DIAIAPLTITLVREEVIDFSKPFMSLGISIMI 115
Score = 41.2 bits (95), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 33/137 (24%), Positives = 59/137 (43%), Gaps = 11/137 (8%)
Query: 688 SPINGIESLRKSDDPIGY---QEGSFAEYYLSQELNISKSRLVALRT--PEDYAKALKDG 742
+PI E L K + I Y GS E++ ++ + +R+ P + + +G
Sbjct: 119 TPIESAEDLSKQTE-IAYGTLDSGSTKEFFRRSKIAVFDKMWTYMRSAEPSVFVRTTAEG 177
Query: 743 -----PGKGGVAAVVDERPYVELFLSSQCSFRIVGQEFTKSGWGFAFPRDSPLAVDLSSA 797
KG A +++ + C VG G+G A P+ S L ++ A
Sbjct: 178 VARVRKSKGKYAYLLESTMNEYIEQRKPCDTMKVGGNLDSKGYGIATPKGSSLGTPVNLA 237
Query: 798 ILELAENGDLQRIHDKW 814
+L+L+E G L ++ +KW
Sbjct: 238 VLKLSEQGVLDKLKNKW 254
>pdb|2XHD|A Chain A, Crystal Structure Of N-((2s)-5-(6-Fluoro-3-Pyridinyl)-2,3-
Dihydro-1h-Inden-2-Yl)-2-Propanesulfonamide In Complex
With The Ligand Binding Domain Of The Human Glua2
Receptor
pdb|2XHD|B Chain B, Crystal Structure Of N-((2s)-5-(6-Fluoro-3-Pyridinyl)-2,3-
Dihydro-1h-Inden-2-Yl)-2-Propanesulfonamide In Complex
With The Ligand Binding Domain Of The Human Glua2
Receptor
Length = 263
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/92 (22%), Positives = 45/92 (48%), Gaps = 8/92 (8%)
Query: 484 VRGSDMFQGFCIDVFTAAVNLLPYAVPYQFVAFGDGHKNPS------YTQLVDSITTGVF 537
+ G++ ++G+C+D+ AA Y+ GDG + +V + G
Sbjct: 26 LEGNERYEGYCVDL--AAEIAKHCGFKYKLTIVGDGKYGARDADTKIWNGMVGELVYGKA 83
Query: 538 DAVVGDITIVTNRTKIVDFSQPYAASGLVVVV 569
D + +TI R +++DFS+P+ + G+ +++
Sbjct: 84 DIAIAPLTITLVREEVIDFSKPFMSLGISIMI 115
Score = 40.8 bits (94), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 33/137 (24%), Positives = 59/137 (43%), Gaps = 11/137 (8%)
Query: 688 SPINGIESLRKSDDPIGY---QEGSFAEYYLSQELNISKSRLVALRT--PEDYAKALKDG 742
+PI E L K + I Y GS E++ ++ + +R+ P + + +G
Sbjct: 119 TPIESAEDLSKQTE-IAYGTLDSGSTKEFFRRSKIAVFDKMWTYMRSAEPSVFVRTTAEG 177
Query: 743 -----PGKGGVAAVVDERPYVELFLSSQCSFRIVGQEFTKSGWGFAFPRDSPLAVDLSSA 797
KG A +++ + C VG G+G A P+ S L ++ A
Sbjct: 178 VARVRKSKGKYAYLLESTMNEYIEQRKPCDTMKVGGNLDSKGYGIATPKGSSLRTPVNLA 237
Query: 798 ILELAENGDLQRIHDKW 814
+L+L+E G L ++ +KW
Sbjct: 238 VLKLSEQGVLDKLKNKW 254
>pdb|3O29|A Chain A, Ligand-Binding Domain Of Glua2 (Flip) Ionotropic Glutamate
Receptor In Complex With An Allosteric Modulator
pdb|3O2A|A Chain A, Ligand-Binding Domain Of Glua2 (Flip) Ionotropic Glutamate
Receptor In Complex With An Allosteric Modulator
pdb|3O6G|A Chain A, Ligand-Binding Domain Of Glua2 (Flip) Ionotropic Glutamate
Receptor In Complex With An Allosteric Modulator
pdb|3O6H|A Chain A, Ligand-Binding Domain Of Glua2 (Flip) Ionotropic Glutamate
Receptor In Complex With An Allosteric Modulator
pdb|3O6I|A Chain A, Ligand-Binding Domain Of Glua2 (Flip) Ionotropic Glutamate
Receptor In Complex With An Allosteric Modulator
pdb|3PMV|A Chain A, Ligand-Binding Domain Of Glua2 (Flip) Ionotropic Glutamate
Receptor In Complex With An Allosteric Modulator
pdb|3PMW|A Chain A, Ligand-Binding Domain Of Glua2 (Flip) Ionotropic Glutamate
Receptor In Complex With An Allosteric Modulator
pdb|3PMX|A Chain A, Ligand-Binding Domain Of Glua2 (Flip) Ionotropic Glutamate
Receptor In Complex With An Allosteric Modulator
pdb|4FAT|A Chain A, Ligand-Binding Domain Of Glua2 (Flip) Ionotropic Glutamate
Receptor In Complex With An Allosteric Modulator
Length = 263
Score = 41.2 bits (95), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 33/137 (24%), Positives = 59/137 (43%), Gaps = 11/137 (8%)
Query: 688 SPINGIESLRKSDDPIGY---QEGSFAEYYLSQELNISKSRLVALRT--PEDYAKALKDG 742
+PI E L K + I Y GS E++ ++ + +R+ P + + +G
Sbjct: 119 TPIESAEDLSKQTE-IAYGTLDSGSTKEFFRRSKIAVFDKMWTYMRSAEPSVFVRTTAEG 177
Query: 743 -----PGKGGVAAVVDERPYVELFLSSQCSFRIVGQEFTKSGWGFAFPRDSPLAVDLSSA 797
KG A +++ + C VG G+G A P+ S L ++ A
Sbjct: 178 VARVRKSKGKYAYLLESTMNEYIEQRKPCDTMKVGGNLDSKGYGIATPKGSSLGTPVNLA 237
Query: 798 ILELAENGDLQRIHDKW 814
+L+L+E G L ++ +KW
Sbjct: 238 VLKLSEQGVLDKLKNKW 254
Score = 41.2 bits (95), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 21/92 (22%), Positives = 45/92 (48%), Gaps = 8/92 (8%)
Query: 484 VRGSDMFQGFCIDVFTAAVNLLPYAVPYQFVAFGDGHKNPS------YTQLVDSITTGVF 537
+ G++ ++G+C+D+ AA Y+ GDG + +V + G
Sbjct: 26 LEGNERYEGYCVDL--AAEIAKHCGFKYKLTIVGDGKYGARDADTKIWNGMVGELVYGKA 83
Query: 538 DAVVGDITIVTNRTKIVDFSQPYAASGLVVVV 569
D + +TI R +++DFS+P+ + G+ +++
Sbjct: 84 DIAIAPLTITLVREEVIDFSKPFMSLGISIMI 115
>pdb|3KEI|A Chain A, Crystal Structure Of The Glua4 Ligand-Binding Domain L651v
Mutant In Complex With Glutamate
pdb|3KEI|B Chain B, Crystal Structure Of The Glua4 Ligand-Binding Domain L651v
Mutant In Complex With Glutamate
pdb|3KFM|A Chain A, Crystal Structure Of The Glua4 Ligand-Binding Domain L651v
Mutant In Complex With Kainate
Length = 257
Score = 41.2 bits (95), Expect = 0.003, Method: Composition-based stats.
Identities = 35/139 (25%), Positives = 61/139 (43%), Gaps = 15/139 (10%)
Query: 688 SPINGIESLRKSDDPIGY---QEGSFAEYYLSQELNISKSRLVALRT--PEDYAKALKDG 742
+PI E L K + I Y GS E++ ++ + + +R+ P + + +G
Sbjct: 115 TPIESAEDLAKQTE-IAYGTVDSGSTKEFFRRSKIAVYEKMWTYMRSAEPSVFTRTTAEG 173
Query: 743 -----PGKGGVAAVVDE--RPYVELFLSSQCSFRIVGQEFTKSGWGFAFPRDSPLAVDLS 795
KG A +++ Y E C VG G+G A P+ S L ++
Sbjct: 174 VARVRKSKGKFAFLLESTMNEYTEQ--RKPCDTMKVGGNLDSKGYGVATPKGSSLRTPVN 231
Query: 796 SAILELAENGDLQRIHDKW 814
A+L+L+E G L ++ +KW
Sbjct: 232 LAVLKLSEAGVLDKLKNKW 250
Score = 38.5 bits (88), Expect = 0.017, Method: Composition-based stats.
Identities = 19/99 (19%), Positives = 47/99 (47%), Gaps = 8/99 (8%)
Query: 477 YREFVSKVRGSDMFQGFCIDVFTAAVNLLPYAVPYQFVAFGDGHKNPS------YTQLVD 530
Y++ G+D ++G+C+D+ + + + Y+ DG + +V
Sbjct: 15 YKKNHEMFEGNDKYEGYCVDLASEIAKHI--GIKYKIAIVPDGKYGARDADTKIWNGMVG 72
Query: 531 SITTGVFDAVVGDITIVTNRTKIVDFSQPYAASGLVVVV 569
+ G + + +TI R +++DFS+P+ + G+ +++
Sbjct: 73 ELVYGKAEIAIAPLTITLVREEVIDFSKPFMSLGISIMI 111
>pdb|3EN3|A Chain A, Crystal Structure Of The Glur4 Ligand-Binding Domain In
Complex With Kainate
pdb|3EPE|A Chain A, Crystal Structure Of The Glur4 Ligand-Binding Domain In
Complex With Glutamate
pdb|3EPE|B Chain B, Crystal Structure Of The Glur4 Ligand-Binding Domain In
Complex With Glutamate
Length = 257
Score = 41.2 bits (95), Expect = 0.003, Method: Composition-based stats.
Identities = 35/139 (25%), Positives = 61/139 (43%), Gaps = 15/139 (10%)
Query: 688 SPINGIESLRKSDDPIGY---QEGSFAEYYLSQELNISKSRLVALRT--PEDYAKALKDG 742
+PI E L K + I Y GS E++ ++ + + +R+ P + + +G
Sbjct: 115 TPIESAEDLAKQTE-IAYGTLDSGSTKEFFRRSKIAVYEKMWTYMRSAEPSVFTRTTAEG 173
Query: 743 -----PGKGGVAAVVDE--RPYVELFLSSQCSFRIVGQEFTKSGWGFAFPRDSPLAVDLS 795
KG A +++ Y E C VG G+G A P+ S L ++
Sbjct: 174 VARVRKSKGKFAFLLESTMNEYTEQ--RKPCDTMKVGGNLDSKGYGVATPKGSSLRTPVN 231
Query: 796 SAILELAENGDLQRIHDKW 814
A+L+L+E G L ++ +KW
Sbjct: 232 LAVLKLSEAGVLDKLKNKW 250
Score = 38.5 bits (88), Expect = 0.017, Method: Composition-based stats.
Identities = 19/99 (19%), Positives = 47/99 (47%), Gaps = 8/99 (8%)
Query: 477 YREFVSKVRGSDMFQGFCIDVFTAAVNLLPYAVPYQFVAFGDGHKNPS------YTQLVD 530
Y++ G+D ++G+C+D+ + + + Y+ DG + +V
Sbjct: 15 YKKNHEMFEGNDKYEGYCVDLASEIAKHI--GIKYKIAIVPDGKYGARDADTKIWNGMVG 72
Query: 531 SITTGVFDAVVGDITIVTNRTKIVDFSQPYAASGLVVVV 569
+ G + + +TI R +++DFS+P+ + G+ +++
Sbjct: 73 ELVYGKAEIAIAPLTITLVREEVIDFSKPFMSLGISIMI 111
>pdb|1LB8|A Chain A, Crystal Structure Of The Non-Desensitizing Glur2 Ligand
Binding Core Mutant (S1s2j-L483y) In Complex With Ampa
At 2.3 Resolution
pdb|1LB8|B Chain B, Crystal Structure Of The Non-Desensitizing Glur2 Ligand
Binding Core Mutant (S1s2j-L483y) In Complex With Ampa
At 2.3 Resolution
pdb|1LB9|A Chain A, Crystal Structure Of The Non-Desensitizing Glur2 Ligand
Binding Core Mutant (S1s2j-L483y) In Complex With
Antagonist Dnqx At 2.3 A Resolution
pdb|1LB9|B Chain B, Crystal Structure Of The Non-Desensitizing Glur2 Ligand
Binding Core Mutant (S1s2j-L483y) In Complex With
Antagonist Dnqx At 2.3 A Resolution
Length = 263
Score = 41.2 bits (95), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 21/92 (22%), Positives = 45/92 (48%), Gaps = 8/92 (8%)
Query: 484 VRGSDMFQGFCIDVFTAAVNLLPYAVPYQFVAFGDGHKNPS------YTQLVDSITTGVF 537
+ G++ ++G+C+D+ AA Y+ GDG + +V + G
Sbjct: 26 LEGNERYEGYCVDL--AAEIAKHCGFKYKLTIVGDGKYGARDADTKIWNGMVGELVYGKA 83
Query: 538 DAVVGDITIVTNRTKIVDFSQPYAASGLVVVV 569
D + +TI R +++DFS+P+ + G+ +++
Sbjct: 84 DIAIAPLTITYVREEVIDFSKPFMSLGISIMI 115
Score = 38.9 bits (89), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 33/137 (24%), Positives = 58/137 (42%), Gaps = 11/137 (8%)
Query: 688 SPINGIESLRKSDDPIGY---QEGSFAEYYLSQELNISKSRLVALRT--PEDYAKALKDG 742
+PI E L K + I Y GS E++ ++ + +R+ P + + +G
Sbjct: 119 TPIESAEDLSKQTE-IAYGTLDSGSTKEFFRRSKIAVFDKMWTYMRSAEPSVFVRTTAEG 177
Query: 743 -----PGKGGVAAVVDERPYVELFLSSQCSFRIVGQEFTKSGWGFAFPRDSPLAVDLSSA 797
KG A +++ + C VG G+G A P+ S L ++ A
Sbjct: 178 VARVRKSKGKYAYLLESTMNEYIEQRKPCDTMKVGGNLDSKGYGIATPKGSSLGNAVNLA 237
Query: 798 ILELAENGDLQRIHDKW 814
+L+L E G L ++ +KW
Sbjct: 238 VLKLNEQGLLDKLKNKW 254
>pdb|2I0B|A Chain A, Crystal Structure Of The Glur6 Ligand Binding Core Elkq
Mutant Dimer At 1.96 Angstroms Resolution
pdb|2I0B|B Chain B, Crystal Structure Of The Glur6 Ligand Binding Core Elkq
Mutant Dimer At 1.96 Angstroms Resolution
pdb|2I0B|C Chain C, Crystal Structure Of The Glur6 Ligand Binding Core Elkq
Mutant Dimer At 1.96 Angstroms Resolution
Length = 259
Score = 41.2 bits (95), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/92 (25%), Positives = 43/92 (46%), Gaps = 6/92 (6%)
Query: 486 GSDMFQGFCIDVFTAAVNLLPYAVPYQFVAFG----DGHKNPSYTQLVDSITTGVFDAVV 541
G+D F+G+CID+ +L + + V G N + +V + D V
Sbjct: 28 GNDRFEGYCIDLLRELSTILGFTYEIRLVEDGKYGAQDDVNGQWNGMVRELIDHKADLAV 87
Query: 542 GDITIVTNRTKIVDFSQPYAASGLVVVVPFRK 573
+ I R +++DFS+P+ G+ ++ +RK
Sbjct: 88 APLAITYVREEVIDFSKPFMTLGISIL--YRK 117
Score = 40.4 bits (93), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 31/71 (43%)
Query: 750 AVVDERPYVELFLSSQCSFRIVGQEFTKSGWGFAFPRDSPLAVDLSSAILELAENGDLQR 809
A + E +E C+ +G G+G P SP ++ AIL+L E G L
Sbjct: 187 AFLMESTTIEFVTQRNCNLTQIGGLIDSKGYGVGTPMGSPYRDKITLAILKLQEQGKLHM 246
Query: 810 IHDKWLMKSSC 820
+ +KW + C
Sbjct: 247 MKEKWWRGNGC 257
>pdb|1P1W|A Chain A, Crystal Structure Of The Glur2 Ligand-Binding Core (S1s2j)
With The L483y And L650t Mutations And In Complex With
Ampa
pdb|1P1W|B Chain B, Crystal Structure Of The Glur2 Ligand-Binding Core (S1s2j)
With The L483y And L650t Mutations And In Complex With
Ampa
Length = 263
Score = 41.2 bits (95), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 21/92 (22%), Positives = 45/92 (48%), Gaps = 8/92 (8%)
Query: 484 VRGSDMFQGFCIDVFTAAVNLLPYAVPYQFVAFGDGHKNPS------YTQLVDSITTGVF 537
+ G++ ++G+C+D+ AA Y+ GDG + +V + G
Sbjct: 26 LEGNERYEGYCVDL--AAEIAKHCGFKYKLTIVGDGKYGARDADTKIWNGMVGELVYGKA 83
Query: 538 DAVVGDITIVTNRTKIVDFSQPYAASGLVVVV 569
D + +TI R +++DFS+P+ + G+ +++
Sbjct: 84 DIAIAPLTITYVREEVIDFSKPFMSLGISIMI 115
Score = 38.9 bits (89), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 33/137 (24%), Positives = 58/137 (42%), Gaps = 11/137 (8%)
Query: 688 SPINGIESLRKSDDPIGY---QEGSFAEYYLSQELNISKSRLVALRT--PEDYAKALKDG 742
+PI E L K + I Y GS E++ ++ + +R+ P + + +G
Sbjct: 119 TPIESAEDLSKQTE-IAYGTTDSGSTKEFFRRSKIAVFDKMWTYMRSAEPSVFVRTTAEG 177
Query: 743 -----PGKGGVAAVVDERPYVELFLSSQCSFRIVGQEFTKSGWGFAFPRDSPLAVDLSSA 797
KG A +++ + C VG G+G A P+ S L ++ A
Sbjct: 178 VARVRKSKGKYAYLLESTMNEYIEQRKPCDTMKVGGNLDSKGYGIATPKGSSLGNAVNLA 237
Query: 798 ILELAENGDLQRIHDKW 814
+L+L E G L ++ +KW
Sbjct: 238 VLKLNEQGLLDKLKNKW 254
>pdb|2PYY|A Chain A, Crystal Structure Of The Glur0 Ligand-Binding Core From
Nostoc Punctiforme In Complex With (L)-Glutamate
pdb|2PYY|C Chain C, Crystal Structure Of The Glur0 Ligand-Binding Core From
Nostoc Punctiforme In Complex With (L)-Glutamate
pdb|2PYY|B Chain B, Crystal Structure Of The Glur0 Ligand-Binding Core From
Nostoc Punctiforme In Complex With (L)-Glutamate
Length = 228
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 35/67 (52%), Gaps = 2/67 (2%)
Query: 750 AVVDERPYVELFLSSQCS--FRIVGQEFTKSGWGFAFPRDSPLAVDLSSAILELAENGDL 807
AVV + P + + +++ IVG + +G P +SP ++ A+L L ENG
Sbjct: 154 AVVFDAPVLLFYAANEGKGKVEIVGSILREESYGIILPNNSPYRKPINQALLNLKENGTY 213
Query: 808 QRIHDKW 814
Q ++DKW
Sbjct: 214 QSLYDKW 220
>pdb|2V3T|A Chain A, Structure Of The Ligand-Binding Core Of The Ionotropic
Glutamate Receptor-Like Glurdelta2 In The Apo Form
pdb|2V3T|B Chain B, Structure Of The Ligand-Binding Core Of The Ionotropic
Glutamate Receptor-Like Glurdelta2 In The Apo Form
Length = 265
Score = 40.8 bits (94), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 27/58 (46%), Gaps = 1/58 (1%)
Query: 766 CSFRIVGQEFTKSGWGFAFPRDSPLAVDLSSAILELAENGDLQRIHDKWLMKS-SCSL 822
CSF VG G+G A SP S ILEL ++GD + KW K+ C L
Sbjct: 208 CSFYTVGNTVADRGYGIALQHGSPYRDVFSQRILELQQSGDXDILKHKWWPKNGQCDL 265
Score = 32.7 bits (73), Expect = 1.00, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 34/76 (44%), Gaps = 7/76 (9%)
Query: 490 FQGFCIDVFTAAVNLLP-----YAVPYQFVAFGDGHKNPSYTQLVDSITTGVFDAVVGDI 544
+QGF IDV A N L Y P +G ++ ++ LV + D + +
Sbjct: 29 YQGFSIDVLDALSNYLGFNYEIYVAPDH--KYGSPQEDGTWNGLVGELVFKRADIGISAL 86
Query: 545 TIVTNRTKIVDFSQPY 560
TI +R +VDF+ Y
Sbjct: 87 TITPDRENVVDFTTRY 102
>pdb|3OEK|A Chain A, Crystal Structure Of Glun2d Ligand-Binding Core In Complex
With L- Aspartate
pdb|3OEL|A Chain A, Crystal Structure Of Glun2d Ligand-Binding Core In Complex
With D- Glutamate
pdb|3OEM|A Chain A, Crystal Structure Of Glun2d Ligand-Binding Core In Complex
With N- Methyl-D-Aspartate
pdb|3OEN|A Chain A, Crystal Structure Of Glun2d Ligand-Binding Core In Complex
With L- Glutamate
Length = 286
Score = 40.4 bits (93), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 23/87 (26%), Positives = 42/87 (48%), Gaps = 14/87 (16%)
Query: 491 QGFCIDVFTAAVNLLPYAVPYQFVAFGDGHKNPSYTQLVDSITTGVF--------DAVVG 542
+GFCID+ + + ++ V G + + +D + G+ D +G
Sbjct: 60 KGFCIDILKRLAHTIGFSYDLYLVTNG------KHGKKIDGVWNGMIGEVFYQRADMAIG 113
Query: 543 DITIVTNRTKIVDFSQPYAASGLVVVV 569
+TI R++IVDFS P+ +G+ V+V
Sbjct: 114 SLTINEERSEIVDFSVPFVETGISVMV 140
>pdb|3G3K|A Chain A, Crystal Structure Of The Glur6 Ligand Binding Domain Dimer
I442h K494e K665r I749l Q753k E757q Mutant With
Glutamate And Nacl At 1.24 Angstrom Resolution
pdb|3G3K|B Chain B, Crystal Structure Of The Glur6 Ligand Binding Domain Dimer
I442h K494e K665r I749l Q753k E757q Mutant With
Glutamate And Nacl At 1.24 Angstrom Resolution
Length = 259
Score = 40.4 bits (93), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 31/71 (43%)
Query: 750 AVVDERPYVELFLSSQCSFRIVGQEFTKSGWGFAFPRDSPLAVDLSSAILELAENGDLQR 809
A + E +E C+ +G G+G P SP ++ AIL+L E G L
Sbjct: 187 AFLMESTTIEFVTQRNCNLTQIGGLIDSKGYGVGTPMGSPYRDKITLAILKLQEQGKLHM 246
Query: 810 IHDKWLMKSSC 820
+ +KW + C
Sbjct: 247 MKEKWWRGNGC 257
Score = 39.7 bits (91), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 23/92 (25%), Positives = 42/92 (45%), Gaps = 6/92 (6%)
Query: 486 GSDMFQGFCIDVFTAAVNLLPYAVPYQFVAFG----DGHKNPSYTQLVDSITTGVFDAVV 541
G+D F+G+CID+ L + + V G N + +V + D V
Sbjct: 28 GNDRFEGYCIDLLRELSTHLGFTYEIRLVEDGKYGAQDDVNGQWNGMVRELIDHKADLAV 87
Query: 542 GDITIVTNRTKIVDFSQPYAASGLVVVVPFRK 573
+ I R +++DFS+P+ G+ ++ +RK
Sbjct: 88 APLAITYVREEVIDFSKPFMTLGISIL--YRK 117
>pdb|3G3J|A Chain A, Crystal Structure Of The Glur6 Ligand Binding Domain Dimer
I442h K494e K665r I749l Q753k Mutant With Glutamate And
Nacl At 1.32 Angstrom Resolution
pdb|3G3J|B Chain B, Crystal Structure Of The Glur6 Ligand Binding Domain Dimer
I442h K494e K665r I749l Q753k Mutant With Glutamate And
Nacl At 1.32 Angstrom Resolution
Length = 259
Score = 40.4 bits (93), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 31/71 (43%)
Query: 750 AVVDERPYVELFLSSQCSFRIVGQEFTKSGWGFAFPRDSPLAVDLSSAILELAENGDLQR 809
A + E +E C+ +G G+G P SP ++ AIL+L E G L
Sbjct: 187 AFLMESTTIEFVTQRNCNLTQIGGLIDSKGYGVGTPMGSPYRDKITLAILKLQEEGKLHM 246
Query: 810 IHDKWLMKSSC 820
+ +KW + C
Sbjct: 247 MKEKWWRGNGC 257
Score = 39.7 bits (91), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 23/92 (25%), Positives = 42/92 (45%), Gaps = 6/92 (6%)
Query: 486 GSDMFQGFCIDVFTAAVNLLPYAVPYQFVAFG----DGHKNPSYTQLVDSITTGVFDAVV 541
G+D F+G+CID+ L + + V G N + +V + D V
Sbjct: 28 GNDRFEGYCIDLLRELSTHLGFTYEIRLVEDGKYGAQDDVNGQWNGMVRELIDHKADLAV 87
Query: 542 GDITIVTNRTKIVDFSQPYAASGLVVVVPFRK 573
+ I R +++DFS+P+ G+ ++ +RK
Sbjct: 88 APLAITYVREEVIDFSKPFMTLGISIL--YRK 117
>pdb|3G3I|A Chain A, Crystal Structure Of The Glur6 Ligand Binding Domain Dimer
I442h K494e I749l Q753k Mutant With Glutamate And Nacl
At 1.37 Angstrom Resolution
pdb|3G3I|B Chain B, Crystal Structure Of The Glur6 Ligand Binding Domain Dimer
I442h K494e I749l Q753k Mutant With Glutamate And Nacl
At 1.37 Angstrom Resolution
Length = 259
Score = 40.4 bits (93), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 31/71 (43%)
Query: 750 AVVDERPYVELFLSSQCSFRIVGQEFTKSGWGFAFPRDSPLAVDLSSAILELAENGDLQR 809
A + E +E C+ +G G+G P SP ++ AIL+L E G L
Sbjct: 187 AFLMESTTIEFVTQRNCNLTQIGGLIDSKGYGVGTPMGSPYRDKITLAILKLQEEGKLHM 246
Query: 810 IHDKWLMKSSC 820
+ +KW + C
Sbjct: 247 MKEKWWRGNGC 257
Score = 39.7 bits (91), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 23/92 (25%), Positives = 42/92 (45%), Gaps = 6/92 (6%)
Query: 486 GSDMFQGFCIDVFTAAVNLLPYAVPYQFVAFG----DGHKNPSYTQLVDSITTGVFDAVV 541
G+D F+G+CID+ L + + V G N + +V + D V
Sbjct: 28 GNDRFEGYCIDLLRELSTHLGFTYEIRLVEDGKYGAQDDVNGQWNGMVRELIDHKADLAV 87
Query: 542 GDITIVTNRTKIVDFSQPYAASGLVVVVPFRK 573
+ I R +++DFS+P+ G+ ++ +RK
Sbjct: 88 APLAITYVREEVIDFSKPFMTLGISIL--YRK 117
>pdb|4GPA|A Chain A, High Resolution Structure Of The Glua4 N-Terminal Domain
(Ntd)
Length = 389
Score = 39.3 bits (90), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 84/414 (20%), Positives = 157/414 (37%), Gaps = 59/414 (14%)
Query: 27 ARPAVVNVGALFTLDSTIGRVA-KIAIEEAVKDVNSNSSILHGTKLNITMQSSNCSGFIG 85
A P+ V +G LF ++ A ++AI LH T N + N +
Sbjct: 1 AFPSSVQIGGLFIRNTDQEYTAFRLAI------------FLHNTSPNASEAPFNLVPHVD 48
Query: 86 MVE-ALRFMETD---------IVAIIGPQCSTVAHIVSYVSNELQVPLLSFGVTDPTLSS 135
+E A F T+ + AI G H ++ + L + L++ PT
Sbjct: 49 NIETANSFAVTNAFCSQYSRGVFAIFGLYDKRSVHTLTSFCSALHISLITPSF--PTEGE 106
Query: 136 LQYPFFVRTTQSDSYQMTAVAEMVSYYGWNAVSVIFVDNEYGRNGVSALNDKLAERRCRI 195
Q+ +R + A+ ++ +Y WN V D + G + + A+ +K + +
Sbjct: 107 SQFVLQLRPSLRG-----ALLSLLDHYEWNCF-VFLYDTDRGYSILQAIMEKAGQNGWHV 160
Query: 196 SYKSGIPPESGVNTGYVMDLLVKVALMESRVIVLHVS----PSLGFQVFSVAKYLGMMGN 251
S I E+ + Y LL ++ + + V+ ++ Q+ SV K++
Sbjct: 161 S---AICVENFNDVSY-RQLLEELDRRQEKKFVIDCEIERLQNILEQIVSVGKHV----K 212
Query: 252 GYVWIATDWLAYMLDSASLPSETLESMQGVLVLRQHIPESDRKKNFLSRWKNLT-----G 306
GY +I + L + S ++ G ++ + P + + RWK L G
Sbjct: 213 GYHYIIAN-LGFKDISLERFIHGGANVTGFQLVDFNTPMVTK---LMDRWKKLDQREYPG 268
Query: 307 GSLGMNSYGLYAYDSVWLLAHAIESFFNQGGKISFSNDSRLKTMEGGNLHLGAMSIFDDG 366
YD V ++A S Q IS + G+ + + G
Sbjct: 269 SETPPKYTSALTYDGVLVMAETFRSLRRQKIDIS-------RRGNAGDCLANPAAPWGQG 321
Query: 367 MLLLGNILQSNLVGLTGPLKFNSDRSLIHAAYDIINVIGTGFRMIGYWSNYSGL 420
+ + + Q + GLTG ++F+ ++ D+ + TG R +GYW++ L
Sbjct: 322 IDMERTLKQVRIQGLTGNVQFDHYGRRVNYTMDVFELKSTGPRKVGYWNDMDKL 375
>pdb|2A5S|A Chain A, Crystal Structure Of The Nr2a Ligand Binding Core In
Complex With Glutamate
pdb|2A5T|B Chain B, Crystal Structure Of The Nr1NR2A LIGAND-Binding Cores
Complex
Length = 284
Score = 38.9 bits (89), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 29/103 (28%), Positives = 46/103 (44%), Gaps = 6/103 (5%)
Query: 491 QGFCIDVFTAAVNLLPYAVPYQFVAFGDGHK--NPSYTQLVDSITTGVFDAVVGDITIVT 548
+GFCID+ + + V G K N + ++ + VG +TI
Sbjct: 58 KGFCIDILKKLSRTVKFTYDLYLVTNGKHGKKVNNVWNGMIGEVVYQRAVMAVGSLTINE 117
Query: 549 NRTKIVDFSQPYAASGLVVVVPFRKLNTG--AWAFLRP--FSP 587
R+++VDFS P+ +G+ V+V TG F RP +SP
Sbjct: 118 ERSEVVDFSVPFVETGISVMVSRGTQVTGLSDKKFQRPHDYSP 160
Score = 30.8 bits (68), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 12/44 (27%), Positives = 23/44 (52%)
Query: 772 GQEFTKSGWGFAFPRDSPLAVDLSSAILELAENGDLQRIHDKWL 815
G F +G+G A + SP + A+L+ +G+++ + WL
Sbjct: 235 GYIFATTGYGIALQKGSPWKRQIDLALLQFVGDGEMEELETLWL 278
>pdb|1GGG|A Chain A, Glutamine Binding Protein Open Ligand-Free Structure
pdb|1GGG|B Chain B, Glutamine Binding Protein Open Ligand-Free Structure
pdb|1WDN|A Chain A, Glutamine-Binding Protein
Length = 226
Score = 38.1 bits (87), Expect = 0.022, Method: Composition-based stats.
Identities = 24/85 (28%), Positives = 42/85 (49%), Gaps = 9/85 (10%)
Query: 485 RGSDMFQGFCIDVFTAAVNLLPYAVPYQFVAFGDGHKNPSYTQLVDSITTGVFDAVVGDI 544
+ D++ GF +D++ A L + Y+ K ++ ++ ++ T D + I
Sbjct: 19 KQGDLYVGFDVDLWAAIAKEL--KLDYEL-------KPMDFSGIIPALQTKNVDLALAGI 69
Query: 545 TIVTNRTKIVDFSQPYAASGLVVVV 569
TI R K +DFS Y SGL+V+V
Sbjct: 70 TITDERKKAIDFSDGYYKSGLLVMV 94
Score = 36.2 bits (82), Expect = 0.087, Method: Composition-based stats.
Identities = 29/100 (29%), Positives = 42/100 (42%), Gaps = 18/100 (18%)
Query: 734 DYAKA------LKDGP---------GKGGVAAVVDERPYVELFLSS--QCSFRIVGQEFT 776
DYAKA L+ P G AV+ + P + F+ + F+ VG
Sbjct: 122 DYAKANIKTKDLRQFPNIDNAYMELGTNRADAVLHDTPNILYFIKTAGNGQFKAVGDSLE 181
Query: 777 KSGWGFAFPRDS-PLAVDLSSAILELAENGDLQRIHDKWL 815
+G AFP+ S L ++ A+ L ENG I+ KW
Sbjct: 182 AQQYGIAFPKGSDELRDKVNGALKTLRENGTYNEIYKKWF 221
>pdb|4F3P|A Chain A, Crystal Structure Of A Glutamine-Binding Periplasmic
Protein From Burkholderia Pseudomallei In Complex With
Glutamine
pdb|4F3P|B Chain B, Crystal Structure Of A Glutamine-Binding Periplasmic
Protein From Burkholderia Pseudomallei In Complex With
Glutamine
Length = 249
Score = 38.1 bits (87), Expect = 0.026, Method: Composition-based stats.
Identities = 18/72 (25%), Positives = 36/72 (50%), Gaps = 2/72 (2%)
Query: 746 GGVAAVVDERPYVELFLSSQCSFRI--VGQEFTKSGWGFAFPRDSPLAVDLSSAILELAE 803
G V A + + P V F++++ R+ G + +G FP+ SPL +++ + +
Sbjct: 170 GRVDAAMHDTPNVLFFVNNEGKGRVKVAGAPVSGDKYGIGFPKGSPLVAKVNAELARMKA 229
Query: 804 NGDLQRIHDKWL 815
+G +I+ KW
Sbjct: 230 DGRYAKIYKKWF 241
Score = 34.7 bits (78), Expect = 0.28, Method: Composition-based stats.
Identities = 16/45 (35%), Positives = 24/45 (53%)
Query: 525 YTQLVDSITTGVFDAVVGDITIVTNRTKIVDFSQPYAASGLVVVV 569
+ L+ ++ T D + +TI R K +DFS PY SGL +V
Sbjct: 71 FAGLIPALQTQNIDVALSGMTIKEERRKAIDFSDPYYDSGLAAMV 115
>pdb|3TQL|A Chain A, Structure Of The Amino Acid Abc Transporter, Periplasmic
Amino Acid- Binding Protein From Coxiella Burnetii
Length = 227
Score = 37.0 bits (84), Expect = 0.048, Method: Composition-based stats.
Identities = 17/39 (43%), Positives = 22/39 (56%)
Query: 522 NPSYTQLVDSITTGVFDAVVGDITIVTNRTKIVDFSQPY 560
N + L+ S+ G FDA+ G I T R K VDF+ PY
Sbjct: 47 NQPWDSLIPSLKLGKFDALFGGXNITTARQKEVDFTDPY 85
>pdb|3SAJ|A Chain A, Crystal Structure Of Glutamate Receptor Glua1 Amino
Terminal Domain
pdb|3SAJ|B Chain B, Crystal Structure Of Glutamate Receptor Glua1 Amino
Terminal Domain
pdb|3SAJ|C Chain C, Crystal Structure Of Glutamate Receptor Glua1 Amino
Terminal Domain
pdb|3SAJ|D Chain D, Crystal Structure Of Glutamate Receptor Glua1 Amino
Terminal Domain
Length = 384
Score = 37.0 bits (84), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 57/286 (19%), Positives = 105/286 (36%), Gaps = 30/286 (10%)
Query: 154 AVAEMVSYYGWNAVSVIFVDNEYGRNGVSALNDKLAERRCRISYKSGIPPESGVNTGYVM 213
A+ ++ +Y W I+ D + G + + + D AE+ +++ + + GY M
Sbjct: 118 ALISIIDHYKWQTFVYIY-DADRGLSVLQRVLDTAAEKNWQVT---AVNILTTTEEGYRM 173
Query: 214 DLLVKVALMESRVIVLHVSPSLGFQVFSVAKYLGMMGNGYVWIATDWLAYMLDSASLPSE 273
L + + R++V+ + L G GY +I + L +M + E
Sbjct: 174 -LFQDLEKKKERLVVVDCESERLNAILGQIVKLEKNGIGYHYILAN-LGFMDIDLNKFKE 231
Query: 274 TLESMQGVLVLR----------QHIPESDRKKNFLSRWKNLTGGSLGMNSYGLYAYDSVW 323
+ ++ G ++ Q SD + + WK S YD V
Sbjct: 232 SGANVTGFQLVNYTDTIPARIMQQWRTSDSRDHTRVDWKRPKYTSA-------LTYDGVK 284
Query: 324 LLAHAIESFFNQGGKISFSNDSRLKTMEGGNLHLGAMSIFDDGMLLLGNILQSNLVGLTG 383
++A A +S Q IS + G+ + G+ + + Q GLTG
Sbjct: 285 VMAEAFQSLRRQRIDIS-------RRGNAGDCLANPAVPWGQGIDIQRALQQVRFEGLTG 337
Query: 384 PLKFNSDRSLIHAAYDIINVIGTGFRMIGYWSNYSGLSKEPPETLY 429
++FN + +I + G R IGYW+ E L+
Sbjct: 338 NVQFNEKGRRTNYTLHVIEMKHDGIRKIGYWNEDDKFVPAALEVLF 383
>pdb|2Y7I|A Chain A, Structural Basis For High Arginine Specificity In
Salmonella Typhimurium Periplasmic Binding Protein
Stm4351.
pdb|2Y7I|B Chain B, Structural Basis For High Arginine Specificity In
Salmonella Typhimurium Periplasmic Binding Protein
Stm4351
Length = 229
Score = 37.0 bits (84), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 36/82 (43%), Gaps = 10/82 (12%)
Query: 492 GFCIDVFTAAVNLLPYAVPYQFVAFGDGHKNPSYTQLVDSITTGVFDAVVGDITIVTNRT 551
GF IDV A + + N S+ L+ S+ FDAV+ + + R
Sbjct: 30 GFDIDVANAVCKEMQAECSF---------TNQSFDSLIPSLRFKKFDAVIAGMDMTPKRE 80
Query: 552 KIVDFSQPYAASGLVVVVPFRK 573
+ V FSQPY GL VV RK
Sbjct: 81 QQVSFSQPY-YEGLSAVVVTRK 101
>pdb|4H5F|A Chain A, Crystal Structure Of An Amino Acid Abc Transporter
Substrate-Binding Protein From Streptococcus Pneumoniae
Canada Mdr_19a Bound To L- Arginine, Form 1
pdb|4H5F|B Chain B, Crystal Structure Of An Amino Acid Abc Transporter
Substrate-Binding Protein From Streptococcus Pneumoniae
Canada Mdr_19a Bound To L- Arginine, Form 1
pdb|4H5F|C Chain C, Crystal Structure Of An Amino Acid Abc Transporter
Substrate-Binding Protein From Streptococcus Pneumoniae
Canada Mdr_19a Bound To L- Arginine, Form 1
pdb|4H5F|D Chain D, Crystal Structure Of An Amino Acid Abc Transporter
Substrate-Binding Protein From Streptococcus Pneumoniae
Canada Mdr_19a Bound To L- Arginine, Form 1
pdb|4H5G|A Chain A, Crystal Structure Of An Amino Acid Abc Transporter
Substrate-Binding Protein From Streptococcus Pneumoniae
Canada Mdr_19a Bound To L- Arginine, Form 2
pdb|4H5G|B Chain B, Crystal Structure Of An Amino Acid Abc Transporter
Substrate-Binding Protein From Streptococcus Pneumoniae
Canada Mdr_19a Bound To L- Arginine, Form 2
Length = 243
Score = 36.2 bits (82), Expect = 0.090, Method: Composition-based stats.
Identities = 30/106 (28%), Positives = 49/106 (46%), Gaps = 10/106 (9%)
Query: 464 GKLLKIGVPNRASYREFVSKVRGSDMFQGFCIDVFTAAVNLLPYAVPYQFVAFGDGHKNP 523
GKL+ P+ A + EF S V G + G ID+ A + L V + ++
Sbjct: 12 GKLVVATSPDYAPF-EFQSLVDGKNQVVGADIDMAQAIADEL--GVKLEILSM------- 61
Query: 524 SYTQLVDSITTGVFDAVVGDITIVTNRTKIVDFSQPYAASGLVVVV 569
S+ ++ S+ TG D V I+ R ++ DFS PY + + +V
Sbjct: 62 SFDNVLTSLQTGKADLAVAGISATDERKEVFDFSIPYYENKISFLV 107
>pdb|2V25|A Chain A, Structure Of The Campylobacter Jejuni Antigen Peb1a, An
Aspartate And Glutamate Receptor With Bound Aspartate
pdb|2V25|B Chain B, Structure Of The Campylobacter Jejuni Antigen Peb1a, An
Aspartate And Glutamate Receptor With Bound Aspartate
Length = 259
Score = 35.0 bits (79), Expect = 0.20, Method: Composition-based stats.
Identities = 33/110 (30%), Positives = 54/110 (49%), Gaps = 13/110 (11%)
Query: 462 NNGKLLKIGVPNRASYREFVSKVRGSDMFQGFCIDVFTA-AVNLLPYAVPYQFVAFGDGH 520
+ G+L+ +GV N + + + G +GF +DV A ++L + VA
Sbjct: 36 SKGQLI-VGVKNDVPHYALLDQATGE--IKGFEVDVAKLLAKSILGDDKKIKLVAVNAKT 92
Query: 521 KNPSYTQLVDSITTGVFDAVVGDITIVTNRTKIVDFSQPY--AASGLVVV 568
+ P L+D+ G DAV+ TI R +I +FS+PY A GL+V+
Sbjct: 93 RGP----LLDN---GSVDAVIATFTITPERKRIYNFSEPYYQDAIGLLVL 135
>pdb|3JPW|A Chain A, Crystal Structure Of Amino Terminal Domain Of The Nmda
Receptor Subunit Nr2b
pdb|3JPY|A Chain A, Crystal Structure Of The Zinc-Bound Amino Terminal Domain
Of The Nmda Receptor Subunit Nr2b
Length = 363
Score = 34.3 bits (77), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 30/52 (57%), Gaps = 2/52 (3%)
Query: 222 MESRVIVLHVSPSLGFQVFSVAKYLGMMGNGYVWIATDWLAYMLDSASLPSE 273
++S +I+L+ + +F VA +G+ G GY WI +A D+ ++PSE
Sbjct: 192 LQSPIILLYCTKEEATYIFEVANSVGLTGYGYTWIVPSLVAG--DTDTVPSE 241
>pdb|3QEL|B Chain B, Crystal Structure Of Amino Terminal Domains Of The Nmda
Receptor Subunit Glun1 And Glun2b In Complex With
Ifenprodil
pdb|3QEL|D Chain D, Crystal Structure Of Amino Terminal Domains Of The Nmda
Receptor Subunit Glun1 And Glun2b In Complex With
Ifenprodil
pdb|3QEM|B Chain B, Crystal Structure Of Amino Terminal Domains Of The Nmda
Receptor Subunit Glun1 And Glun2b In Complex With Ro
25-6981
pdb|3QEM|D Chain D, Crystal Structure Of Amino Terminal Domains Of The Nmda
Receptor Subunit Glun1 And Glun2b In Complex With Ro
25-6981
Length = 364
Score = 34.3 bits (77), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 30/52 (57%), Gaps = 2/52 (3%)
Query: 222 MESRVIVLHVSPSLGFQVFSVAKYLGMMGNGYVWIATDWLAYMLDSASLPSE 273
++S +I+L+ + +F VA +G+ G GY WI +A D+ ++PSE
Sbjct: 193 LQSPIILLYCTKEEATYIFEVANSVGLTGYGYTWIVPSLVAG--DTDTVPSE 242
>pdb|1MP5|A Chain A, Y177f Variant Of S. Enterica Rmla
pdb|1MP5|B Chain B, Y177f Variant Of S. Enterica Rmla
pdb|1MP5|C Chain C, Y177f Variant Of S. Enterica Rmla
pdb|1MP5|D Chain D, Y177f Variant Of S. Enterica Rmla
Length = 292
Score = 33.5 bits (75), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 39/74 (52%), Gaps = 6/74 (8%)
Query: 246 LGMMGNGYVWIATDWLAYMLDSASLPSETLESMQGVLVLRQHIPESDR-KKNFLSRWKNL 304
+ MMG GY W+ T ++++++ + T+E QG L+ PE +KNF++ + +
Sbjct: 215 VAMMGRGYAWLDTGTHQSLIEASNFIA-TIEERQG---LKVSCPEEIAFRKNFINAQQVI 270
Query: 305 T-GGSLGMNSYGLY 317
G L N YG Y
Sbjct: 271 ELAGPLSKNDYGKY 284
>pdb|1MP3|A Chain A, L89t Variant Of S. Enterica Rmla
pdb|1MP3|B Chain B, L89t Variant Of S. Enterica Rmla
Length = 292
Score = 33.5 bits (75), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 39/74 (52%), Gaps = 6/74 (8%)
Query: 246 LGMMGNGYVWIATDWLAYMLDSASLPSETLESMQGVLVLRQHIPESDR-KKNFLSRWKNL 304
+ MMG GY W+ T ++++++ + T+E QG L+ PE +KNF++ + +
Sbjct: 215 VAMMGRGYAWLDTGTHQSLIEASNFIA-TIEERQG---LKVSCPEEIAFRKNFINAQQVI 270
Query: 305 T-GGSLGMNSYGLY 317
G L N YG Y
Sbjct: 271 ELAGPLSKNDYGKY 284
>pdb|3PKQ|A Chain A, Q83d Variant Of S. Enterica Rmla With Dgtp
pdb|3PKQ|B Chain B, Q83d Variant Of S. Enterica Rmla With Dgtp
pdb|3PKQ|C Chain C, Q83d Variant Of S. Enterica Rmla With Dgtp
pdb|3PKQ|D Chain D, Q83d Variant Of S. Enterica Rmla With Dgtp
Length = 292
Score = 33.5 bits (75), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 39/74 (52%), Gaps = 6/74 (8%)
Query: 246 LGMMGNGYVWIATDWLAYMLDSASLPSETLESMQGVLVLRQHIPESDR-KKNFLSRWKNL 304
+ MMG GY W+ T ++++++ + T+E QG L+ PE +KNF++ + +
Sbjct: 215 VAMMGRGYAWLDTGTHQSLIEASNFIA-TIEERQG---LKVSCPEEIAFRKNFINAQQVI 270
Query: 305 T-GGSLGMNSYGLY 317
G L N YG Y
Sbjct: 271 ELAGPLSKNDYGKY 284
>pdb|1IIM|A Chain A, Thymidylyltransferase Complexed With Ttp
pdb|1IIM|B Chain B, Thymidylyltransferase Complexed With Ttp
pdb|1IIN|A Chain A, Thymidylyltransferase Complexed With Udp-Glucose
pdb|1IIN|B Chain B, Thymidylyltransferase Complexed With Udp-Glucose
pdb|1IIN|C Chain C, Thymidylyltransferase Complexed With Udp-Glucose
pdb|1IIN|D Chain D, Thymidylyltransferase Complexed With Udp-Glucose
Length = 292
Score = 33.5 bits (75), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 39/74 (52%), Gaps = 6/74 (8%)
Query: 246 LGMMGNGYVWIATDWLAYMLDSASLPSETLESMQGVLVLRQHIPESDR-KKNFLSRWKNL 304
+ MMG GY W+ T ++++++ + T+E QG L+ PE +KNF++ + +
Sbjct: 215 VAMMGRGYAWLDTGTHQSLIEASNFIA-TIEERQG---LKVSCPEEIAFRKNFINAQQVI 270
Query: 305 T-GGSLGMNSYGLY 317
G L N YG Y
Sbjct: 271 ELAGPLSKNDYGKY 284
>pdb|3PKP|A Chain A, Q83s Variant Of S. Enterica Rmla With Datp
pdb|3PKP|B Chain B, Q83s Variant Of S. Enterica Rmla With Datp
pdb|3PKP|C Chain C, Q83s Variant Of S. Enterica Rmla With Datp
pdb|3PKP|D Chain D, Q83s Variant Of S. Enterica Rmla With Datp
pdb|3PKP|I Chain I, Q83s Variant Of S. Enterica Rmla With Datp
pdb|3PKP|J Chain J, Q83s Variant Of S. Enterica Rmla With Datp
pdb|3PKP|K Chain K, Q83s Variant Of S. Enterica Rmla With Datp
pdb|3PKP|L Chain L, Q83s Variant Of S. Enterica Rmla With Datp
Length = 292
Score = 33.5 bits (75), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 39/74 (52%), Gaps = 6/74 (8%)
Query: 246 LGMMGNGYVWIATDWLAYMLDSASLPSETLESMQGVLVLRQHIPESDR-KKNFLSRWKNL 304
+ MMG GY W+ T ++++++ + T+E QG L+ PE +KNF++ + +
Sbjct: 215 VAMMGRGYAWLDTGTHQSLIEASNFIA-TIEERQG---LKVSCPEEIAFRKNFINAQQVI 270
Query: 305 T-GGSLGMNSYGLY 317
G L N YG Y
Sbjct: 271 ELAGPLSKNDYGKY 284
>pdb|1IIT|A Chain A, Glur0 Ligand Binding Core Complex With L-Serine
pdb|1IIW|A Chain A, Glur0 Ligand Binding Core: Closed-Cleft Ligand-Free
Structure
Length = 232
Score = 32.7 bits (73), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 20/83 (24%), Positives = 39/83 (46%), Gaps = 10/83 (12%)
Query: 490 FQGFCIDVFTAAVNLLPYAVPYQFVAFGDGHKNPSYTQLVDSITTGVFDAVVGDITIVTN 549
F G +DV+ A + Y + S + + ++ G D ++G I++
Sbjct: 27 FTGISLDVWRAVAESQKWNSEY--------VRQNSISAGITAVAEGELDILIGPISVTPE 78
Query: 550 RTKI--VDFSQPYAASGLVVVVP 570
R I + F+QPY +SG+ +++P
Sbjct: 79 RAAIEGITFTQPYFSSGIGLLIP 101
>pdb|1II5|A Chain A, Crystal Structure Of The Glur0 Ligand Binding Core Complex
With L- Glutamate
Length = 233
Score = 32.7 bits (73), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 20/83 (24%), Positives = 39/83 (46%), Gaps = 10/83 (12%)
Query: 490 FQGFCIDVFTAAVNLLPYAVPYQFVAFGDGHKNPSYTQLVDSITTGVFDAVVGDITIVTN 549
F G +DV+ A + Y + S + + ++ G D ++G I++
Sbjct: 27 FTGISLDVWRAVAESQKWNSEY--------VRQNSISAGITAVAEGELDILIGPISVTPE 78
Query: 550 RTKI--VDFSQPYAASGLVVVVP 570
R I + F+QPY +SG+ +++P
Sbjct: 79 RAAIEGITFTQPYFSSGIGLLIP 101
>pdb|2YJP|A Chain A, Crystal Structure Of The Solute Receptors For L-Cysteine
Of Neisseria Gonorrhoeae
pdb|2YJP|B Chain B, Crystal Structure Of The Solute Receptors For L-Cysteine
Of Neisseria Gonorrhoeae
pdb|2YJP|C Chain C, Crystal Structure Of The Solute Receptors For L-Cysteine
Of Neisseria Gonorrhoeae
Length = 291
Score = 32.0 bits (71), Expect = 1.6, Method: Composition-based stats.
Identities = 15/45 (33%), Positives = 23/45 (51%)
Query: 529 VDSITTGVFDAVVGDITIVTNRTKIVDFSQPYAASGLVVVVPFRK 573
V+ + +G D ++ + T R + VDF+ PY L VV P K
Sbjct: 110 VEYVRSGKVDLILANFTQTPERAEAVDFADPYMKVALGVVSPKNK 154
>pdb|4F3S|A Chain A, Crystal Structure Of Periplasmic D-Alanine Abc Transporter
From Salmonella Enterica
Length = 255
Score = 31.6 bits (70), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 12/38 (31%), Positives = 21/38 (55%)
Query: 531 SITTGVFDAVVGDITIVTNRTKIVDFSQPYAASGLVVV 568
++ +G D I+I R K++DFS+PY + +V
Sbjct: 63 AVASGQADVAFSGISITDKRKKVIDFSEPYYINSFYLV 100
>pdb|4DZ1|A Chain A, Crystal Structure Of Dals, An Atp Binding Cassette
Transporter For D- Alanine From Salmonella Enterica
Length = 259
Score = 31.2 bits (69), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 12/38 (31%), Positives = 21/38 (55%)
Query: 531 SITTGVFDAVVGDITIVTNRTKIVDFSQPYAASGLVVV 568
++ +G D I+I R K++DFS+PY + +V
Sbjct: 83 AVASGQADVAFSGISITDKRKKVIDFSEPYYINSFYLV 120
>pdb|2Q2C|A Chain A, Crystal Structures Of The Arginine-, Lysine-,
Histidine-Binding Protein Artj From The Thermophilic
Bacterium Geobacillus Stearothermophilus
pdb|2Q2C|B Chain B, Crystal Structures Of The Arginine-, Lysine-,
Histidine-Binding Protein Artj From The Thermophilic
Bacterium Geobacillus Stearothermophilus
pdb|2Q2C|C Chain C, Crystal Structures Of The Arginine-, Lysine-,
Histidine-Binding Protein Artj From The Thermophilic
Bacterium Geobacillus Stearothermophilus
pdb|2Q2C|D Chain D, Crystal Structures Of The Arginine-, Lysine-,
Histidine-Binding Protein Artj From The Thermophilic
Bacterium Geobacillus Stearothermophilus
pdb|2PVU|A Chain A, Crystal Structures Of The Arginine-, Lysine-,
Histidine-Binding Protein Artj From The Thermophilic
Bacterium Geobacillus Stearothermophilus
pdb|2Q2A|A Chain A, Crystal Structures Of The Arginine-, Lysine-, Histidine-
Binding Protein Artj From The Thermophilic Bacterium
Geobacillus Stearothermophilus
pdb|2Q2A|B Chain B, Crystal Structures Of The Arginine-, Lysine-, Histidine-
Binding Protein Artj From The Thermophilic Bacterium
Geobacillus Stearothermophilus
pdb|2Q2A|C Chain C, Crystal Structures Of The Arginine-, Lysine-, Histidine-
Binding Protein Artj From The Thermophilic Bacterium
Geobacillus Stearothermophilus
pdb|2Q2A|D Chain D, Crystal Structures Of The Arginine-, Lysine-, Histidine-
Binding Protein Artj From The Thermophilic Bacterium
Geobacillus Stearothermophilus
Length = 272
Score = 30.8 bits (68), Expect = 3.5, Method: Composition-based stats.
Identities = 18/76 (23%), Positives = 34/76 (44%), Gaps = 4/76 (5%)
Query: 746 GGVAAVVDERPYVELFLSSQCSFRIVGQE----FTKSGWGFAFPRDSPLAVDLSSAILEL 801
GGV AV+ + ++ + + ++ E F +G FP++S L + A+ +
Sbjct: 188 GGVDAVITDNAVANEYVKNNPNKKLQVIEDPKNFASEYYGMIFPKNSELKAKVDEALKNV 247
Query: 802 AENGDLQRIHDKWLMK 817
+G I+ KW K
Sbjct: 248 INSGKYTEIYKKWFGK 263
Score = 30.0 bits (66), Expect = 6.9, Method: Composition-based stats.
Identities = 16/49 (32%), Positives = 24/49 (48%)
Query: 521 KNPSYTQLVDSITTGVFDAVVGDITIVTNRTKIVDFSQPYAASGLVVVV 569
KN + L S+ + D + ITI R + DFS PY + V++V
Sbjct: 85 KNIGWDPLFASLQSKEVDMGISGITITDERKQSYDFSDPYFEATQVILV 133
>pdb|4I62|A Chain A, 1.05 Angstrom Crystal Structure Of An Amino Acid Abc
Transporter Substrate-Binding Protein From Streptococcus
Pneumoniae Canada Mdr_19a Bound To L-Arginine
Length = 269
Score = 30.4 bits (67), Expect = 5.2, Method: Composition-based stats.
Identities = 14/53 (26%), Positives = 27/53 (50%)
Query: 524 SYTQLVDSITTGVFDAVVGDITIVTNRTKIVDFSQPYAASGLVVVVPFRKLNT 576
S+ ++ S+ +G D + ++ R+K+ DFS PY + ++V L T
Sbjct: 89 SFDNVLASVQSGKADLAISGVSKTDERSKVFDFSTPYYTAKNKLIVKKSDLAT 141
>pdb|3I6V|A Chain A, Crystal Structure Of A Periplasmic HisGLUGLNARGOPINE
FAMILY- Binding Protein From Silicibacter Pomeroyi In
Complex With Lysine
Length = 232
Score = 30.0 bits (66), Expect = 6.8, Method: Composition-based stats.
Identities = 8/36 (22%), Positives = 23/36 (63%)
Query: 525 YTQLVDSITTGVFDAVVGDITIVTNRTKIVDFSQPY 560
+ ++ ++ +G +D ++ ++I R +++DF+Q Y
Sbjct: 53 WDSIIPNLVSGNYDTIIAGMSITDERDEVIDFTQNY 88
>pdb|4GNR|A Chain A, 1.0 Angstrom Resolution Crystal Structure Of The
Branched-Chain Amino Acid Transporter Substrate Binding
Protein Livj From Streptococcus Pneumoniae Str. Canada
Mdr_19a In Complex With Isoleucine
Length = 353
Score = 29.6 bits (65), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 40/161 (24%), Positives = 62/161 (38%), Gaps = 23/161 (14%)
Query: 17 FSFGYCKSVSARPAVVNVGALFTLD--STIGRVAKIAIEEAVKDVNSNSSILHGTKLNIT 74
F+F S++A GA +D + G + IE KD S ++ N+
Sbjct: 12 FNFEESGSLAAYGTAEQKGAQLAVDEINAAGGIDGKQIEVVDKDNKSETAEAASVTTNLV 71
Query: 75 MQSSNCSGFIGMVEALRFMETDIVAIIGPQCSTVAHIVSYVSNELQVPLLSFGVTDPTLS 134
QS + A++GP S + + VPL+S T L+
Sbjct: 72 TQSK------------------VSAVVGPATSGATAAAVANATKAGVPLISPSATQDGLT 113
Query: 135 SLQYPFFVRTTQSDSYQMTAVAEMVSYYGWNAVSVI-FVDN 174
Q F+ T Q DS+Q ++ VS NA V+ + DN
Sbjct: 114 KGQDYLFIGTFQ-DSFQGKIISNYVSEK-LNAKKVVLYTDN 152
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.136 0.408
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 27,091,278
Number of Sequences: 62578
Number of extensions: 1119182
Number of successful extensions: 2437
Number of sequences better than 100.0: 125
Number of HSP's better than 100.0 without gapping: 106
Number of HSP's successfully gapped in prelim test: 19
Number of HSP's that attempted gapping in prelim test: 2159
Number of HSP's gapped (non-prelim): 214
length of query: 938
length of database: 14,973,337
effective HSP length: 108
effective length of query: 830
effective length of database: 8,214,913
effective search space: 6818377790
effective search space used: 6818377790
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 56 (26.2 bits)