Query 002309
Match_columns 938
No_of_seqs 443 out of 3959
Neff 9.7
Searched_HMMs 29240
Date Mon Mar 25 21:08:08 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002309.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/002309hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3kg2_A Glutamate receptor 2; I 100.0 9.9E-98 3E-102 923.7 65.8 764 30-868 1-814 (823)
2 3o21_A Glutamate receptor 3; p 100.0 1.1E-50 3.7E-55 454.9 39.2 367 29-422 3-379 (389)
3 4gpa_A Glutamate receptor 4; P 100.0 1.4E-48 4.7E-53 440.1 43.2 373 28-426 2-381 (389)
4 3om0_A Glutamate receptor, ion 100.0 9.4E-49 3.2E-53 441.3 36.6 369 30-423 3-381 (393)
5 3h6g_A Glutamate receptor, ion 100.0 3.6E-48 1.2E-52 437.0 37.4 369 29-423 2-383 (395)
6 4f11_A Gamma-aminobutyric acid 100.0 4.4E-48 1.5E-52 441.9 38.1 368 26-417 9-404 (433)
7 3hsy_A Glutamate receptor 2; l 100.0 7.8E-48 2.7E-52 430.4 36.8 363 30-421 1-372 (376)
8 3saj_A Glutamate receptor 1; r 100.0 3.8E-47 1.3E-51 426.4 36.3 366 26-425 5-379 (384)
9 1jdp_A NPR-C, atrial natriuret 100.0 2.9E-46 9.9E-51 427.8 39.9 361 28-419 6-397 (441)
10 3sm9_A Mglur3, metabotropic gl 100.0 4.1E-46 1.4E-50 427.8 37.5 367 26-415 8-462 (479)
11 2e4u_A Metabotropic glutamate 100.0 1.5E-45 5.1E-50 432.7 41.6 388 27-459 10-485 (555)
12 3qek_A NMDA glutamate receptor 100.0 5.8E-46 2E-50 417.1 35.7 338 28-416 2-369 (384)
13 1dp4_A Atrial natriuretic pept 100.0 4.7E-46 1.6E-50 425.7 35.1 358 30-418 1-398 (435)
14 3ks9_A Mglur1, metabotropic gl 100.0 3E-45 1E-49 422.4 38.5 371 25-416 11-475 (496)
15 3mq4_A Mglur7, metabotropic gl 100.0 7.5E-46 2.6E-50 426.9 25.9 369 26-415 11-467 (481)
16 3qel_B Glutamate [NMDA] recept 100.0 3E-40 1E-44 364.9 26.3 339 29-421 2-355 (364)
17 3i45_A Twin-arginine transloca 100.0 5.7E-39 1.9E-43 360.9 35.1 357 29-427 3-370 (387)
18 3h5l_A Putative branched-chain 100.0 5E-39 1.7E-43 365.3 27.7 345 27-408 10-388 (419)
19 4f06_A Extracellular ligand-bi 100.0 3.9E-38 1.3E-42 351.3 33.2 347 28-414 2-360 (371)
20 3ipc_A ABC transporter, substr 100.0 6.5E-38 2.2E-42 348.2 31.3 344 30-417 1-352 (356)
21 3td9_A Branched chain amino ac 100.0 1.9E-37 6.5E-42 345.7 32.0 343 27-418 12-364 (366)
22 4gnr_A ABC transporter substra 100.0 2.1E-37 7.2E-42 343.5 29.6 339 27-414 3-351 (353)
23 3hut_A Putative branched-chain 100.0 6.2E-37 2.1E-41 340.6 32.4 344 30-417 3-354 (358)
24 3lkb_A Probable branched-chain 100.0 2.1E-37 7.3E-42 348.7 28.2 352 28-420 4-378 (392)
25 1usg_A Leucine-specific bindin 100.0 5.6E-37 1.9E-41 339.2 31.1 339 30-411 1-345 (346)
26 3i09_A Periplasmic branched-ch 100.0 1.7E-36 5.7E-41 339.2 33.6 334 29-407 2-342 (375)
27 3n0w_A ABC branched chain amin 100.0 2.3E-36 8E-41 338.5 32.9 335 28-407 3-346 (379)
28 3eaf_A ABC transporter, substr 100.0 3.1E-36 1.1E-40 338.9 32.0 349 29-418 2-373 (391)
29 4evq_A Putative ABC transporte 100.0 5E-36 1.7E-40 335.5 32.5 345 28-417 13-364 (375)
30 4eyg_A Twin-arginine transloca 100.0 7.1E-36 2.4E-40 333.4 32.4 346 28-416 3-359 (368)
31 3n0x_A Possible substrate bind 100.0 2.1E-36 7.1E-41 338.0 28.0 330 30-405 3-346 (374)
32 3lop_A Substrate binding perip 100.0 7.5E-36 2.6E-40 332.5 29.9 338 29-410 3-355 (364)
33 3sg0_A Extracellular ligand-bi 100.0 9.8E-35 3.3E-39 326.5 23.8 343 28-411 24-385 (386)
34 1pea_A Amidase operon; gene re 100.0 1E-32 3.5E-37 309.5 34.7 347 28-414 4-357 (385)
35 3snr_A Extracellular ligand-bi 100.0 3.2E-33 1.1E-37 311.2 27.2 341 28-411 4-361 (362)
36 2h4a_A YRAM (HI1655); perplasm 99.9 7.9E-27 2.7E-31 251.5 23.0 307 33-411 2-317 (325)
37 3ckm_A YRAM (HI1655), LPOA; pe 99.9 4.6E-27 1.6E-31 256.6 21.3 312 32-413 3-321 (327)
38 1yae_A Glutamate receptor, ion 99.9 1.9E-26 6.6E-31 250.2 17.0 272 462-836 10-306 (312)
39 3g3k_A Glutamate receptor, ion 99.9 1.9E-24 6.5E-29 227.9 16.9 232 464-821 3-258 (259)
40 1pb7_A N-methyl-D-aspartate re 99.9 1E-24 3.4E-29 233.8 14.0 236 465-822 41-292 (292)
41 2a5s_A N-methyl-D-aspartate re 99.9 5.8E-25 2E-29 234.9 11.3 246 461-821 25-283 (284)
42 4h5g_A Amino acid ABC superfam 99.9 2.7E-23 9.2E-28 216.6 15.9 220 465-816 12-237 (243)
43 2rc8_A Glutamate [NMDA] recept 99.9 2.1E-23 7.3E-28 223.9 15.5 215 489-821 67-293 (294)
44 4gvo_A LMO2349 protein; struct 99.9 4.2E-23 1.4E-27 215.2 14.0 223 463-816 7-235 (243)
45 3kzg_A Arginine 3RD transport 99.9 4.8E-22 1.6E-26 206.4 17.0 218 465-817 3-231 (237)
46 1mqi_A Glutamate receptor 2; G 99.9 7E-22 2.4E-26 208.7 17.7 231 464-821 3-262 (263)
47 2v3u_A Glutamate receptor delt 99.9 8E-22 2.8E-26 208.4 17.7 232 463-821 1-264 (265)
48 3i6v_A Periplasmic His/Glu/Gln 99.9 6E-22 2.1E-26 204.8 14.8 219 464-824 4-225 (232)
49 4f3p_A Glutamine-binding perip 99.9 1.7E-21 5.8E-26 203.9 17.9 222 462-818 21-244 (249)
50 3k4u_A Binding component of AB 99.9 2.2E-21 7.6E-26 202.4 16.7 222 464-816 4-228 (245)
51 3del_B Arginine binding protei 99.9 3.7E-21 1.3E-25 200.3 17.9 222 464-822 10-238 (242)
52 3hv1_A Polar amino acid ABC up 99.9 4.1E-21 1.4E-25 203.4 17.3 226 463-821 19-253 (268)
53 3kbr_A Cyclohexadienyl dehydra 99.9 2.7E-21 9.1E-26 200.9 14.5 221 464-816 14-237 (239)
54 3tql_A Arginine-binding protei 99.8 9.5E-21 3.3E-25 194.8 17.0 218 465-815 2-227 (227)
55 1ii5_A SLR1257 protein; membra 99.8 1.7E-20 5.7E-25 193.9 18.0 218 464-816 3-226 (233)
56 4eq9_A ABC transporter substra 99.8 1.2E-20 4E-25 196.9 15.6 225 464-821 7-240 (246)
57 3h7m_A Sensor protein; histidi 99.8 2.8E-20 9.5E-25 192.4 17.4 219 463-816 9-230 (234)
58 1lst_A Lysine, arginine, ornit 99.8 3.5E-20 1.2E-24 192.4 16.6 222 464-817 3-233 (239)
59 3mpk_A Virulence sensor protei 99.8 3.6E-20 1.2E-24 195.9 16.7 220 463-817 30-253 (267)
60 1wdn_A GLNBP, glutamine bindin 99.8 6.7E-20 2.3E-24 188.3 17.0 217 465-816 3-222 (226)
61 4dz1_A DALS D-alanine transpor 99.8 7.3E-20 2.5E-24 192.6 17.3 223 463-817 27-254 (259)
62 2y7i_A STM4351; arginine-bindi 99.8 1.4E-19 4.9E-24 186.3 17.5 217 464-816 5-228 (229)
63 2iee_A ORF2, probable ABC tran 99.8 3.8E-20 1.3E-24 196.2 11.8 219 463-816 19-246 (271)
64 2pyy_A Ionotropic glutamate re 99.8 2.5E-19 8.5E-24 184.3 15.1 218 465-816 3-222 (228)
65 2q88_A EHUB, putative ABC tran 99.8 3.5E-19 1.2E-23 187.2 15.3 221 464-815 12-239 (257)
66 3qax_A Probable ABC transporte 99.8 7.9E-19 2.7E-23 185.6 17.9 217 464-816 30-253 (268)
67 2pvu_A ARTJ; basic amino acid 99.8 1.2E-18 4.1E-23 184.8 17.8 219 463-816 40-262 (272)
68 4i62_A Amino acid ABC transpor 99.8 6.9E-19 2.3E-23 186.2 15.6 220 464-816 38-264 (269)
69 1xt8_A Putative amino-acid tra 99.8 1E-18 3.6E-23 187.3 15.3 218 464-816 43-265 (292)
70 2vha_A Periplasmic binding tra 99.8 1.9E-18 6.3E-23 184.9 16.3 223 464-817 16-249 (287)
71 2yjp_A Putative ABC transporte 99.8 1.4E-18 4.8E-23 186.1 15.3 217 465-816 55-276 (291)
72 2yln_A Putative ABC transporte 99.8 1.6E-18 5.6E-23 184.8 14.9 216 464-816 56-277 (283)
73 2v25_A Major cell-binding fact 99.7 9.7E-17 3.3E-21 168.4 11.4 215 464-815 37-258 (259)
74 3n5l_A Binding protein compone 98.6 1.3E-07 4.4E-12 101.1 12.5 124 688-815 102-242 (310)
75 2ozz_A Hypothetical protein YH 98.6 7.8E-08 2.7E-12 95.4 7.3 169 487-798 27-210 (231)
76 3p7i_A PHND, subunit of alkylp 98.6 3.2E-07 1.1E-11 98.3 12.4 123 688-814 112-250 (321)
77 2h3h_A Sugar ABC transporter, 98.3 6.8E-05 2.3E-09 80.2 21.8 206 32-257 2-214 (313)
78 2qh8_A Uncharacterized protein 98.3 4E-05 1.4E-09 81.5 19.8 201 29-246 6-215 (302)
79 3ksm_A ABC-type sugar transpor 98.2 4.9E-05 1.7E-09 79.5 19.7 207 32-257 1-219 (276)
80 3brq_A HTH-type transcriptiona 98.2 2.2E-05 7.6E-10 83.2 15.9 203 30-252 18-228 (296)
81 3lkv_A Uncharacterized conserv 98.2 4.9E-05 1.7E-09 80.7 18.3 191 28-234 5-204 (302)
82 2rjo_A Twin-arginine transloca 98.2 0.00011 3.8E-09 79.2 21.4 205 30-249 4-222 (332)
83 3d02_A Putative LACI-type tran 98.2 0.00016 5.5E-09 76.8 21.9 209 30-257 3-221 (303)
84 2qu7_A Putative transcriptiona 98.1 1.7E-05 5.7E-10 83.9 13.9 206 29-256 6-219 (288)
85 3brs_A Periplasmic binding pro 98.1 0.00016 5.3E-09 76.3 20.8 208 31-257 5-222 (289)
86 3rot_A ABC sugar transporter, 98.1 8.7E-05 3E-09 78.6 18.4 205 31-251 3-215 (297)
87 1tjy_A Sugar transport protein 98.1 0.00026 8.9E-09 75.7 22.1 204 33-257 5-220 (316)
88 1dbq_A Purine repressor; trans 98.0 0.00015 5.2E-09 76.3 18.7 203 30-252 6-215 (289)
89 3lft_A Uncharacterized protein 98.0 0.00039 1.3E-08 73.5 21.8 200 31-248 2-210 (295)
90 3l49_A ABC sugar (ribose) tran 98.0 0.00018 6.1E-09 75.9 19.0 200 31-249 5-216 (291)
91 2x7x_A Sensor protein; transfe 98.0 0.00025 8.5E-09 76.2 20.1 200 30-248 5-212 (325)
92 2fn9_A Ribose ABC transporter, 98.0 0.00024 8.4E-09 74.8 19.7 197 32-248 3-215 (290)
93 3o1i_D Periplasmic protein TOR 98.0 0.00014 4.7E-09 77.3 17.5 205 30-249 4-218 (304)
94 2fvy_A D-galactose-binding per 98.0 0.00038 1.3E-08 74.0 20.1 204 32-247 3-226 (309)
95 3c3k_A Alanine racemase; struc 97.9 0.0004 1.4E-08 72.9 19.9 203 30-257 7-217 (285)
96 2h0a_A TTHA0807, transcription 97.9 5.5E-05 1.9E-09 79.2 13.0 203 33-257 1-213 (276)
97 3g1w_A Sugar ABC transporter; 97.9 0.00073 2.5E-08 71.7 21.7 210 32-259 5-221 (305)
98 2vk2_A YTFQ, ABC transporter p 97.9 0.00041 1.4E-08 73.7 19.4 205 31-252 2-219 (306)
99 2iks_A DNA-binding transcripti 97.9 0.00041 1.4E-08 73.2 19.1 206 30-256 19-229 (293)
100 3h75_A Periplasmic sugar-bindi 97.9 0.00086 2.9E-08 72.8 21.7 208 31-252 3-233 (350)
101 2ioy_A Periplasmic sugar-bindi 97.9 0.001 3.4E-08 69.8 21.5 203 33-257 3-214 (283)
102 3dbi_A Sugar-binding transcrip 97.9 0.0002 6.9E-09 77.4 16.5 208 30-256 60-274 (338)
103 3l6u_A ABC-type sugar transpor 97.9 0.00072 2.4E-08 71.3 20.0 201 29-249 6-220 (293)
104 2fep_A Catabolite control prot 97.9 0.0004 1.4E-08 73.2 17.9 205 28-252 13-223 (289)
105 3gbv_A Putative LACI-family tr 97.9 0.00034 1.2E-08 74.2 17.4 210 29-258 6-231 (304)
106 3clk_A Transcription regulator 97.8 0.00012 4.1E-09 77.2 13.3 203 30-252 7-213 (290)
107 3d8u_A PURR transcriptional re 97.8 0.00036 1.2E-08 72.8 16.8 206 31-257 3-214 (275)
108 8abp_A L-arabinose-binding pro 97.8 0.00081 2.8E-08 71.3 19.7 213 31-258 2-231 (306)
109 3o74_A Fructose transport syst 97.8 0.00042 1.4E-08 72.1 17.1 204 32-257 3-213 (272)
110 2o20_A Catabolite control prot 97.8 0.00044 1.5E-08 74.5 17.6 208 30-257 62-272 (332)
111 1jx6_A LUXP protein; protein-l 97.8 0.00076 2.6E-08 72.9 18.8 208 28-248 40-258 (342)
112 2hsg_A Glucose-resistance amyl 97.8 0.00028 9.7E-09 76.0 14.9 204 29-252 58-267 (332)
113 2rgy_A Transcriptional regulat 97.7 0.00027 9.2E-09 74.5 14.2 203 30-252 7-217 (290)
114 3bbl_A Regulatory protein of L 97.7 0.00031 1.1E-08 73.9 14.5 202 31-252 4-216 (287)
115 3egc_A Putative ribose operon 97.7 0.00025 8.5E-09 74.8 13.8 207 30-256 7-218 (291)
116 3k4h_A Putative transcriptiona 97.7 0.00047 1.6E-08 72.7 15.7 206 30-254 7-222 (292)
117 3m9w_A D-xylose-binding peripl 97.7 0.0015 5.2E-08 69.5 19.1 200 31-249 2-213 (313)
118 3ctp_A Periplasmic binding pro 97.7 0.00036 1.2E-08 75.1 14.2 202 30-257 59-264 (330)
119 3gyb_A Transcriptional regulat 97.7 0.00026 8.8E-09 74.2 12.5 200 30-254 4-206 (280)
120 1qpz_A PURA, protein (purine n 97.6 0.0016 5.4E-08 70.3 18.8 208 30-256 57-270 (340)
121 3uif_A Sulfonate ABC transport 97.6 0.00016 5.6E-09 78.5 10.8 108 688-801 109-228 (348)
122 3gv0_A Transcriptional regulat 97.6 0.00082 2.8E-08 70.7 16.0 207 30-257 7-221 (288)
123 3jy6_A Transcriptional regulat 97.6 0.0021 7E-08 67.0 18.8 205 29-257 5-214 (276)
124 3k9c_A Transcriptional regulat 97.6 0.0024 8.1E-08 67.1 18.6 206 29-257 10-218 (289)
125 3kke_A LACI family transcripti 97.6 0.0011 3.8E-08 70.2 16.1 202 29-252 13-225 (303)
126 3hcw_A Maltose operon transcri 97.6 0.0036 1.2E-07 66.0 19.8 208 29-257 5-225 (295)
127 3g85_A Transcriptional regulat 97.5 0.0004 1.4E-08 73.1 11.3 207 29-257 9-221 (289)
128 3qk7_A Transcriptional regulat 97.5 0.0014 4.7E-08 69.1 14.8 205 30-256 5-219 (294)
129 3tb6_A Arabinose metabolism tr 97.4 0.0012 4.2E-08 69.6 14.3 207 32-257 16-234 (298)
130 2dri_A D-ribose-binding protei 97.4 0.015 5.1E-07 60.2 21.2 196 33-248 3-206 (271)
131 2x26_A Periplasmic aliphatic s 97.4 0.0015 5E-08 69.4 13.6 122 688-816 95-232 (308)
132 3kjx_A Transcriptional regulat 97.3 0.0024 8.1E-08 69.1 15.3 208 30-257 67-280 (344)
133 3bil_A Probable LACI-family tr 97.3 0.0054 1.8E-07 66.4 18.1 205 30-256 65-273 (348)
134 3e61_A Putative transcriptiona 97.3 0.0025 8.5E-08 66.4 14.8 200 30-257 7-210 (277)
135 3e3m_A Transcriptional regulat 97.3 0.0091 3.1E-07 64.7 18.8 209 30-257 69-283 (355)
136 3cs3_A Sugar-binding transcrip 97.2 0.011 3.8E-07 61.4 18.7 197 30-257 7-210 (277)
137 3un6_A Hypothetical protein sa 97.2 0.00059 2E-08 73.8 8.9 122 688-816 143-283 (341)
138 3ksx_A Nitrate transport prote 97.2 0.0026 9E-08 68.0 14.0 93 688-787 121-219 (324)
139 3hs3_A Ribose operon repressor 97.2 0.005 1.7E-07 64.1 15.8 199 29-257 8-211 (277)
140 1byk_A Protein (trehalose oper 97.2 0.014 4.9E-07 59.7 18.8 195 33-257 4-203 (255)
141 3uug_A Multiple sugar-binding 97.2 0.0064 2.2E-07 65.1 16.8 205 31-252 3-232 (330)
142 1gud_A ALBP, D-allose-binding 97.2 0.019 6.4E-07 60.1 19.8 209 33-258 3-226 (288)
143 3huu_A Transcription regulator 97.2 0.005 1.7E-07 65.2 15.2 200 30-254 21-232 (305)
144 4fe7_A Xylose operon regulator 97.2 0.012 4.1E-07 65.2 18.8 209 28-257 22-236 (412)
145 3h5o_A Transcriptional regulat 97.1 0.0096 3.3E-07 64.1 17.4 206 30-257 61-272 (339)
146 2fqx_A Membrane lipoprotein TM 97.1 0.023 7.9E-07 60.3 19.8 207 30-257 3-220 (318)
147 3ix1_A N-formyl-4-amino-5-amin 97.1 0.0019 6.4E-08 68.4 10.9 77 487-571 14-94 (302)
148 3qsl_A Putative exported prote 97.1 0.0034 1.2E-07 67.8 13.2 72 688-765 128-205 (346)
149 2k1e_A Water soluble analogue 97.1 0.00047 1.6E-08 59.4 4.9 78 598-685 20-97 (103)
150 3jvd_A Transcriptional regulat 97.1 0.019 6.4E-07 61.6 18.8 197 30-256 63-263 (333)
151 3s99_A Basic membrane lipoprot 97.0 0.042 1.4E-06 59.0 20.5 202 27-248 22-230 (356)
152 2f5x_A BUGD; periplasmic bindi 97.0 0.005 1.7E-07 64.9 12.9 121 688-814 121-275 (312)
153 2hqb_A Transcriptional activat 96.9 0.089 3E-06 55.1 21.5 195 31-247 5-204 (296)
154 3miz_A Putative transcriptiona 96.9 0.0012 4.3E-08 69.7 7.1 204 30-256 12-229 (301)
155 2qpq_A Protein BUG27; alpha/be 96.9 0.0076 2.6E-07 63.3 12.9 121 688-814 112-266 (301)
156 1jye_A Lactose operon represso 96.8 0.048 1.6E-06 58.8 19.3 204 30-257 60-271 (349)
157 2ih3_C Voltage-gated potassium 96.8 0.0016 5.4E-08 58.0 6.0 77 599-685 42-118 (122)
158 2dvz_A BUGE, putative exported 96.7 0.0086 2.9E-07 63.2 12.1 121 688-814 125-279 (314)
159 3eff_K Voltage-gated potassium 96.5 0.004 1.4E-07 56.9 6.7 74 601-684 23-96 (139)
160 2a9h_A Voltage-gated potassium 96.5 0.0043 1.5E-07 57.5 6.9 78 599-686 65-142 (155)
161 3h5t_A Transcriptional regulat 96.3 0.037 1.3E-06 60.1 14.4 207 30-254 67-298 (366)
162 3qi7_A Putative transcriptiona 96.1 0.11 3.7E-06 55.2 15.6 217 30-251 11-252 (371)
163 4h33_A LMO2059 protein; bilaye 96.0 0.011 3.9E-07 53.6 6.8 59 621-685 42-100 (137)
164 3ixl_A Amdase, arylmalonate de 95.8 0.12 4E-06 52.0 13.9 127 88-242 58-199 (240)
165 4ddd_A Immunogenic protein; ss 95.7 0.025 8.7E-07 60.2 9.2 108 688-801 136-285 (327)
166 3jv9_A OXYR, transcriptional r 95.6 0.2 6.7E-06 49.1 14.8 194 465-803 4-208 (219)
167 4ab5_A Transcriptional regulat 95.5 0.15 5E-06 50.2 13.6 84 464-573 7-90 (222)
168 2x7q_A Ca3427, possible thiami 95.5 0.041 1.4E-06 58.5 9.8 108 688-804 110-236 (321)
169 3ho7_A OXYR; beta-alpha-barrel 95.5 0.12 4.1E-06 51.3 12.8 84 464-573 10-93 (232)
170 3ldc_A Calcium-gated potassium 95.3 0.031 1.1E-06 45.5 6.2 54 622-681 28-81 (82)
171 3ouf_A Potassium channel prote 95.3 0.02 7E-07 48.3 5.3 62 621-688 31-92 (97)
172 3pjs_K KCSA, voltage-gated pot 95.2 0.0023 7.8E-08 60.5 -1.2 61 618-684 63-123 (166)
173 3oxn_A Putative transcriptiona 95.1 0.43 1.5E-05 47.6 15.7 84 464-573 18-101 (241)
174 2q67_A Potassium channel prote 94.7 0.045 1.5E-06 47.8 5.9 57 622-684 49-105 (114)
175 1p7b_A Integral membrane chann 94.5 0.05 1.7E-06 57.2 6.8 62 619-686 93-154 (333)
176 4gx0_A TRKA domain protein; me 94.4 0.094 3.2E-06 60.6 9.6 127 621-759 50-183 (565)
177 1xl4_A Inward rectifier potass 94.0 0.078 2.7E-06 55.1 7.0 63 617-685 77-139 (301)
178 2g29_A Nitrate transport prote 94.0 0.17 5.7E-06 55.9 10.2 103 694-803 151-272 (417)
179 1us5_A Putative GLUR0 ligand b 93.8 0.53 1.8E-05 49.5 13.2 62 688-755 121-188 (314)
180 3fzv_A Probable transcriptiona 93.5 0.65 2.2E-05 48.3 13.4 84 464-573 94-178 (306)
181 3vou_A ION transport 2 domain 93.5 0.082 2.8E-06 48.7 5.4 57 621-683 51-107 (148)
182 1orq_C Potassium channel; volt 93.2 0.13 4.6E-06 51.1 6.9 75 599-683 146-220 (223)
183 2hxr_A HTH-type transcriptiona 93.0 1.8 6.3E-05 42.7 15.4 83 465-573 30-112 (238)
184 1lnq_A MTHK channels, potassiu 93.0 0.071 2.4E-06 57.0 4.7 127 622-762 45-171 (336)
185 2esn_A Probable transcriptiona 92.6 1.2 4.2E-05 46.3 13.9 83 465-573 101-186 (310)
186 2y7p_A LYSR-type regulatory pr 92.6 1.2 4E-05 43.7 12.8 84 464-573 7-90 (218)
187 2ql3_A Probable transcriptiona 92.4 2.6 8.8E-05 40.5 15.0 83 465-573 5-87 (209)
188 2fyi_A HTH-type transcriptiona 92.3 2.1 7.2E-05 42.0 14.5 85 464-573 13-97 (228)
189 1i6a_A OXYR, hydrogen peroxide 92.1 0.35 1.2E-05 47.5 8.2 83 465-573 5-87 (219)
190 2xed_A Putative maleate isomer 92.0 1.5 5E-05 44.9 12.9 126 88-241 82-226 (273)
191 2qks_A KIR3.1-prokaryotic KIR 91.6 0.3 1E-05 51.1 7.3 58 622-685 78-135 (321)
192 1zbm_A Hypothetical protein AF 91.3 0.96 3.3E-05 46.5 11.0 102 694-805 99-211 (280)
193 3fxq_A LYSR type regulator of 91.3 1.2 4E-05 46.4 11.8 85 465-573 92-176 (305)
194 2zzv_A ABC transporter, solute 90.9 0.98 3.4E-05 48.5 10.9 59 688-758 164-222 (361)
195 1al3_A Cys regulon transcripti 90.9 3.9 0.00013 42.8 15.5 206 465-816 93-305 (324)
196 3beh_A MLL3241 protein; transm 90.5 0.19 6.4E-06 54.2 4.6 75 599-683 142-216 (355)
197 2dgd_A 223AA long hypothetical 89.8 2 6.9E-05 42.4 11.2 87 152-241 96-189 (223)
198 1ixc_A CBNR, LYSR-type regulat 89.1 6.2 0.00021 40.3 15.1 84 464-573 90-173 (294)
199 4esw_A Pyrimidine biosynthesis 88.7 1.5 5.2E-05 46.6 10.1 66 688-760 101-169 (342)
200 2h9b_A HTH-type transcriptiona 87.8 14 0.0005 38.0 17.0 82 466-573 91-172 (312)
201 2h98_A HTH-type transcriptiona 87.4 20 0.0007 36.9 17.9 82 466-573 91-172 (313)
202 2r9r_B Paddle chimera voltage 86.5 0.67 2.3E-05 52.2 5.8 59 620-684 373-431 (514)
203 2pfz_A Putative exported prote 85.7 4.2 0.00014 42.2 11.2 87 688-787 128-215 (301)
204 2pfy_A Putative exported prote 85.4 4.2 0.00014 42.2 11.0 87 688-787 129-216 (301)
205 2hzl_A Trap-T family sorbitol/ 85.3 2.3 8E-05 45.6 9.2 87 688-787 163-252 (365)
206 3s99_A Basic membrane lipoprot 84.4 3.4 0.00012 44.0 9.8 89 32-129 150-238 (356)
207 3kos_A HTH-type transcriptiona 84.3 8.1 0.00028 37.2 12.1 105 691-802 96-204 (219)
208 3ukm_A Potassium channel subfa 84.0 1 3.5E-05 45.8 5.1 70 621-696 200-276 (280)
209 2eq5_A 228AA long hypothetical 84.0 6 0.00021 39.0 10.9 115 89-235 68-186 (228)
210 1uth_A LYSR-type regulatory pr 84.0 9.2 0.00031 39.7 13.1 83 465-573 105-187 (315)
211 3hhf_B Transcriptional regulat 83.5 1.8 6.1E-05 41.7 6.7 81 464-573 6-86 (213)
212 1atg_A MODA, periplasmic molyb 82.6 4.3 0.00015 39.6 9.3 71 494-573 14-90 (231)
213 2i49_A Bicarbonate transporter 82.6 6.1 0.00021 43.3 11.2 106 693-803 153-280 (429)
214 1sw5_A Osmoprotection protein 81.4 7 0.00024 39.8 10.5 104 689-802 124-238 (275)
215 2q5c_A NTRC family transcripti 81.3 38 0.0013 32.2 16.3 158 32-249 5-162 (196)
216 2fqx_A Membrane lipoprotein TM 80.2 21 0.00073 37.0 14.1 125 33-164 131-263 (318)
217 3bfj_A 1,3-propanediol oxidore 79.5 8.6 0.0003 41.5 11.0 100 139-243 11-114 (387)
218 3ox4_A Alcohol dehydrogenase 2 79.3 3.3 0.00011 44.7 7.4 91 152-244 19-111 (383)
219 3onm_A Transcriptional regulat 78.1 30 0.001 33.6 13.9 81 465-573 27-107 (238)
220 1twy_A ABC transporter, peripl 77.8 47 0.0016 33.2 15.8 72 493-573 41-113 (290)
221 2l82_A Designed protein OR32; 76.0 23 0.00079 29.0 9.5 97 141-248 4-104 (162)
222 3um7_A Potassium channel subfa 75.4 2.6 8.7E-05 43.5 4.8 56 621-682 114-169 (309)
223 3r26_A Molybdate-binding perip 74.6 27 0.00091 34.4 12.3 70 495-573 22-97 (237)
224 2hqb_A Transcriptional activat 74.1 34 0.0011 35.0 13.3 121 33-166 128-248 (296)
225 3sya_A G protein-activated inw 72.3 5.1 0.00018 41.9 6.3 61 621-687 90-152 (340)
226 3szp_A Transcriptional regulat 71.6 5.8 0.0002 40.3 6.7 72 726-803 214-287 (291)
227 3gzg_A Molybdate-binding perip 71.5 34 0.0012 34.1 12.3 70 495-573 38-113 (253)
228 3um7_A Potassium channel subfa 71.0 5 0.00017 41.3 5.8 56 622-683 224-285 (309)
229 1rrm_A Lactaldehyde reductase; 70.6 6.4 0.00022 42.5 6.9 101 139-244 9-111 (386)
230 1jfl_A Aspartate racemase; alp 70.3 18 0.00062 35.5 9.7 80 87-195 65-144 (228)
231 1vlj_A NADH-dependent butanol 69.8 12 0.0004 40.7 8.8 88 154-243 33-123 (407)
232 2zsk_A PH1733, 226AA long hypo 69.1 17 0.00057 35.7 9.1 76 92-196 69-144 (226)
233 1o2d_A Alcohol dehydrogenase, 67.8 15 0.00053 39.2 9.1 99 139-243 19-120 (371)
234 3uhj_A Probable glycerol dehyd 65.2 8.5 0.00029 41.4 6.4 82 154-241 43-126 (387)
235 3ukm_A Potassium channel subfa 64.9 6.2 0.00021 40.0 4.9 58 621-684 92-149 (280)
236 3m9w_A D-xylose-binding peripl 63.8 20 0.00069 36.9 9.0 79 165-248 3-84 (313)
237 2pju_A Propionate catabolism o 63.5 92 0.0032 30.3 12.9 133 73-249 41-174 (225)
238 1xs5_A 29 kDa protein, membran 62.5 1E+02 0.0035 30.3 13.4 36 498-541 21-56 (241)
239 2dwu_A Glutamate racemase; iso 62.3 53 0.0018 33.2 11.5 119 87-233 60-190 (276)
240 4dik_A Flavoprotein; TM0755, e 61.3 35 0.0012 36.9 10.5 92 164-262 265-364 (410)
241 3s81_A Putative aspartate race 61.1 11 0.00038 38.1 6.0 38 87-125 90-127 (268)
242 2gzm_A Glutamate racemase; enz 60.7 28 0.00097 35.1 9.1 38 88-125 57-94 (267)
243 1mkz_A Molybdenum cofactor bio 60.7 31 0.0011 32.0 8.7 66 164-233 10-79 (172)
244 1jq5_A Glycerol dehydrogenase; 60.5 28 0.00095 37.1 9.5 108 139-259 10-119 (370)
245 3ce9_A Glycerol dehydrogenase; 60.1 32 0.0011 36.4 9.8 109 139-260 12-122 (354)
246 1nh8_A ATP phosphoribosyltrans 59.0 31 0.0011 35.1 8.7 103 689-803 120-225 (304)
247 3hn0_A Nitrate transport prote 57.4 18 0.00062 36.8 7.1 63 696-765 94-161 (283)
248 2oho_A Glutamate racemase; iso 57.1 33 0.0011 34.7 8.9 37 89-125 67-103 (273)
249 3g1w_A Sugar ABC transporter; 57.0 21 0.00072 36.6 7.6 80 165-248 5-87 (305)
250 2qsx_A Putative transcriptiona 55.6 1.1E+02 0.0038 29.0 12.4 70 727-802 140-211 (218)
251 3spc_A Inward-rectifier K+ cha 54.8 12 0.00043 39.0 5.2 61 621-687 93-155 (343)
252 3hl0_A Maleylacetate reductase 54.0 20 0.00067 38.0 6.7 97 153-260 23-121 (353)
253 3fd3_A Chromosome replication 53.7 96 0.0033 28.7 11.5 67 492-571 15-81 (208)
254 3mz1_A Putative transcriptiona 53.7 21 0.00071 36.2 6.9 71 726-802 216-288 (300)
255 3ist_A Glutamate racemase; str 53.3 50 0.0017 33.2 9.3 38 88-125 59-96 (269)
256 3h75_A Periplasmic sugar-bindi 52.9 32 0.0011 36.1 8.4 80 164-248 3-87 (350)
257 3gbv_A Putative LACI-family tr 52.6 35 0.0012 34.7 8.5 84 163-248 7-95 (304)
258 1r9l_A Glycine betaine-binding 51.6 36 0.0012 35.1 8.3 39 496-542 25-63 (309)
259 3l49_A ABC sugar (ribose) tran 51.3 40 0.0014 34.0 8.6 79 165-248 6-87 (291)
260 3jzd_A Iron-containing alcohol 50.4 19 0.00066 38.1 6.0 97 153-260 25-123 (358)
261 1zuw_A Glutamate racemase 1; ( 49.7 1.1E+02 0.0038 30.7 11.3 119 86-233 55-187 (272)
262 3isp_A HTH-type transcriptiona 49.5 1.3E+02 0.0046 30.1 12.5 68 725-800 217-284 (303)
263 3dmy_A Protein FDRA; predicted 49.1 1.9E+02 0.0065 31.7 13.7 145 81-247 45-198 (480)
264 2nr1_A NR1 M2, M2; receptor, s 47.6 6.7 0.00023 23.3 1.0 19 620-638 6-24 (27)
265 2de3_A Dibenzothiophene desulf 47.4 46 0.0016 35.3 8.5 121 687-816 108-299 (365)
266 8abp_A L-arabinose-binding pro 47.3 51 0.0018 33.5 8.8 78 165-248 3-83 (306)
267 3jy6_A Transcriptional regulat 47.2 40 0.0014 33.7 7.8 78 164-248 7-86 (276)
268 3p6l_A Sugar phosphate isomera 47.2 76 0.0026 31.4 9.8 94 152-248 24-129 (262)
269 1tjy_A Sugar transport protein 46.9 26 0.00089 36.2 6.3 80 165-248 4-86 (316)
270 2jfn_A Glutamate racemase; cel 46.1 72 0.0024 32.4 9.3 36 90-125 77-113 (285)
271 4a8p_A Putrescine carbamoyltra 45.6 2.8E+02 0.0097 28.9 14.3 132 31-198 41-183 (355)
272 2xxp_A CPS2A; replication, pep 45.5 14 0.00047 39.8 3.9 67 688-763 26-98 (398)
273 1b73_A Glutamate racemase; iso 45.2 52 0.0018 32.8 8.0 120 86-234 52-181 (254)
274 3k6v_A Solute-binding protein 45.2 2.4E+02 0.0083 29.4 13.5 69 496-573 59-133 (354)
275 3d02_A Putative LACI-type tran 44.9 44 0.0015 33.9 7.8 80 165-248 5-87 (303)
276 1ccw_A Protein (glutamate muta 44.9 1.2E+02 0.004 26.8 9.4 84 166-258 5-92 (137)
277 2l69_A Rossmann 2X3 fold prote 44.6 41 0.0014 26.7 5.4 100 138-247 25-125 (134)
278 2jfq_A Glutamate racemase; cel 44.4 82 0.0028 32.0 9.4 38 88-125 76-113 (286)
279 3rot_A ABC sugar transporter, 43.8 34 0.0012 34.8 6.6 81 165-248 4-87 (297)
280 3uug_A Multiple sugar-binding 43.5 52 0.0018 33.9 8.2 79 165-248 4-85 (330)
281 2fn9_A Ribose ABC transporter, 43.2 57 0.0019 32.8 8.3 79 165-248 3-84 (290)
282 3rfq_A Pterin-4-alpha-carbinol 43.2 63 0.0021 30.4 7.6 65 164-232 30-98 (185)
283 3gd5_A Otcase, ornithine carba 43.1 2.4E+02 0.0082 29.0 12.6 131 32-198 49-187 (323)
284 3o74_A Fructose transport syst 43.1 25 0.00084 35.2 5.3 79 165-248 3-83 (272)
285 3l6u_A ABC-type sugar transpor 43.0 43 0.0015 33.8 7.2 81 163-248 7-90 (293)
286 3dbi_A Sugar-binding transcrip 42.4 77 0.0026 32.8 9.3 82 162-248 59-144 (338)
287 1y5e_A Molybdenum cofactor bio 42.2 94 0.0032 28.6 8.7 68 162-233 11-82 (169)
288 2rin_A Putative glycine betain 42.1 60 0.0021 33.2 8.1 39 496-543 24-62 (298)
289 2pjk_A 178AA long hypothetical 42.0 79 0.0027 29.5 8.1 67 162-232 13-90 (178)
290 1k2d_P MBP peptide, myelin bas 42.0 10 0.00034 21.5 1.1 21 917-937 5-25 (26)
291 3i42_A Response regulator rece 41.8 1.1E+02 0.0039 25.6 8.9 69 180-259 15-85 (127)
292 3brq_A HTH-type transcriptiona 41.5 82 0.0028 31.6 9.2 80 163-248 18-102 (296)
293 2yxb_A Coenzyme B12-dependent 41.4 1.6E+02 0.0055 26.7 10.1 85 165-258 19-107 (161)
294 3l6g_A Betaine ABC transporter 41.4 83 0.0028 31.3 8.8 43 493-544 16-58 (256)
295 3ojc_A Putative aspartate/glut 41.3 17 0.0006 35.7 3.6 79 89-196 69-148 (231)
296 3tb6_A Arabinose metabolism tr 41.2 76 0.0026 31.9 8.9 79 165-248 16-100 (298)
297 3k4h_A Putative transcriptiona 41.1 46 0.0016 33.6 7.1 80 163-248 7-93 (292)
298 2vvt_A Glutamate racemase; iso 41.1 87 0.003 31.8 9.0 39 87-125 77-115 (290)
299 3okf_A 3-dehydroquinate syntha 41.1 73 0.0025 34.0 8.6 112 139-259 41-158 (390)
300 2is8_A Molybdopterin biosynthe 40.9 77 0.0026 29.0 7.8 64 166-233 3-72 (164)
301 3ksm_A ABC-type sugar transpor 40.6 43 0.0015 33.3 6.8 80 166-248 2-85 (276)
302 1jx6_A LUXP protein; protein-l 39.6 59 0.002 33.7 7.9 82 165-248 44-129 (342)
303 2h3h_A Sugar ABC transporter, 39.5 55 0.0019 33.5 7.5 79 166-248 3-83 (313)
304 1ta9_A Glycerol dehydrogenase; 39.4 49 0.0017 36.2 7.2 96 154-259 81-178 (450)
305 3lmz_A Putative sugar isomeras 39.2 91 0.0031 30.8 8.9 94 152-248 32-127 (257)
306 3huu_A Transcription regulator 38.9 41 0.0014 34.4 6.3 84 159-248 17-107 (305)
307 2fep_A Catabolite control prot 38.7 76 0.0026 31.9 8.3 78 165-248 17-96 (289)
308 3hhg_A Transcriptional regulat 38.1 23 0.00079 36.1 4.2 69 727-801 218-289 (306)
309 2fp4_A Succinyl-COA ligase [GD 37.2 3.5E+02 0.012 27.5 14.3 144 81-245 80-234 (305)
310 2fvy_A D-galactose-binding per 36.7 90 0.0031 31.6 8.6 79 165-248 3-85 (309)
311 3lte_A Response regulator; str 36.6 1.4E+02 0.0047 25.2 8.7 68 165-247 7-76 (132)
312 3uhf_A Glutamate racemase; str 36.6 2E+02 0.0067 28.9 10.6 58 67-125 48-115 (274)
313 3tmg_A Glycine betaine, L-prol 36.4 2E+02 0.0069 28.8 11.0 40 495-543 32-71 (280)
314 2hpg_A ABC transporter, peripl 36.1 39 0.0013 35.2 5.6 101 688-800 148-251 (327)
315 3k9c_A Transcriptional regulat 35.9 91 0.0031 31.3 8.4 81 160-248 8-89 (289)
316 2czl_A Hypothetical protein TT 34.8 96 0.0033 30.8 8.3 59 693-759 91-150 (272)
317 3cfx_A UPF0100 protein MA_0280 34.7 3.4E+02 0.012 27.1 12.7 70 495-573 20-95 (296)
318 1i4n_A Indole-3-glycerol phosp 34.4 1.2E+02 0.004 30.1 8.3 85 154-249 65-152 (251)
319 3cfz_A UPF0100 protein MJ1186; 34.1 3.7E+02 0.013 26.8 12.8 71 494-573 19-95 (292)
320 3qvl_A Putative hydantoin race 34.0 3.4E+02 0.012 26.5 13.0 84 32-125 2-96 (245)
321 3r7f_A Aspartate carbamoyltran 33.9 1.8E+02 0.0061 29.7 9.8 134 32-198 37-179 (304)
322 3kke_A LACI family transcripti 33.7 58 0.002 33.1 6.4 84 159-248 10-95 (303)
323 3gl9_A Response regulator; bet 33.5 1.4E+02 0.0046 25.0 8.0 57 180-247 14-72 (122)
324 2iks_A DNA-binding transcripti 33.3 54 0.0019 33.1 6.1 84 160-248 16-101 (293)
325 1oj7_A Hypothetical oxidoreduc 33.3 52 0.0018 35.5 6.2 83 155-243 43-128 (408)
326 2g2c_A Putative molybdenum cof 33.3 77 0.0026 29.1 6.5 63 166-232 7-78 (167)
327 1h3d_A ATP-phosphoribosyltrans 33.0 2.3E+02 0.0077 28.8 10.3 102 689-803 115-219 (299)
328 3iwt_A 178AA long hypothetical 33.0 91 0.0031 28.9 7.1 64 166-233 17-91 (178)
329 4ep1_A Otcase, ornithine carba 32.9 3.3E+02 0.011 28.2 11.7 129 32-198 71-209 (340)
330 4edp_A ABC transporter, substr 32.8 3E+02 0.01 28.0 12.2 192 496-814 52-299 (351)
331 3qk7_A Transcriptional regulat 32.7 79 0.0027 31.9 7.3 78 164-248 6-89 (294)
332 3grc_A Sensor protein, kinase; 32.4 1.2E+02 0.0042 26.0 7.7 67 165-246 7-75 (140)
333 1y80_A Predicted cobalamin bin 31.6 2E+02 0.0069 27.3 9.6 86 165-258 89-178 (210)
334 3gv0_A Transcriptional regulat 31.3 82 0.0028 31.6 7.1 80 163-248 7-90 (288)
335 3l4e_A Uncharacterized peptida 31.2 1.2E+02 0.004 29.0 7.6 98 152-260 15-121 (206)
336 4es6_A Uroporphyrinogen-III sy 31.2 44 0.0015 33.3 4.8 86 151-245 115-206 (254)
337 3gt7_A Sensor protein; structu 31.2 1.7E+02 0.0059 25.6 8.6 57 180-247 19-77 (154)
338 3lr1_A Tungstate ABC transport 30.9 29 0.001 34.2 3.3 75 491-574 18-95 (236)
339 2rgy_A Transcriptional regulat 30.9 82 0.0028 31.7 7.0 79 164-248 8-91 (290)
340 1jye_A Lactose operon represso 30.8 1.2E+02 0.0041 31.5 8.5 82 163-248 60-143 (349)
341 2vpn_A Periplasmic substrate b 30.8 53 0.0018 33.9 5.5 101 688-800 130-233 (316)
342 3brs_A Periplasmic binding pro 30.1 38 0.0013 34.1 4.3 81 165-248 6-91 (289)
343 1pvv_A Otcase, ornithine carba 29.9 4.6E+02 0.016 26.7 14.2 132 31-198 46-185 (315)
344 3fni_A Putative diflavin flavo 29.9 1.2E+02 0.0041 27.4 7.2 84 165-258 5-95 (159)
345 3ezx_A MMCP 1, monomethylamine 29.8 2.4E+02 0.008 27.1 9.6 86 165-258 93-184 (215)
346 3rvy_A ION transport protein; 29.8 35 0.0012 34.7 3.8 60 620-685 178-243 (285)
347 3tsm_A IGPS, indole-3-glycerol 29.7 2.8E+02 0.0096 27.7 10.3 87 153-249 82-171 (272)
348 2vk2_A YTFQ, ABC transporter p 29.4 91 0.0031 31.6 7.1 79 165-248 3-84 (306)
349 3cij_A UPF0100 protein AF_0094 29.3 4.4E+02 0.015 26.2 14.7 71 494-573 19-95 (295)
350 3e61_A Putative transcriptiona 29.3 70 0.0024 31.9 6.1 77 164-248 8-87 (277)
351 1oth_A Protein (ornithine tran 29.3 4.8E+02 0.016 26.7 12.3 132 31-198 46-185 (321)
352 2csu_A 457AA long hypothetical 29.3 1.4E+02 0.0047 32.7 8.7 144 81-247 73-227 (457)
353 2ioy_A Periplasmic sugar-bindi 29.2 1.2E+02 0.0042 30.2 8.0 79 165-248 2-83 (283)
354 3sds_A Ornithine carbamoyltran 29.1 5.1E+02 0.017 26.9 15.1 132 31-198 66-218 (353)
355 3egc_A Putative ribose operon 29.0 49 0.0017 33.4 4.9 80 163-248 7-88 (291)
356 3d8u_A PURR transcriptional re 28.7 83 0.0028 31.2 6.5 78 165-248 4-83 (275)
357 3hs3_A Ribose operon repressor 28.7 1.1E+02 0.0037 30.5 7.4 68 159-231 5-75 (277)
358 3kjx_A Transcriptional regulat 28.6 1.8E+02 0.006 30.1 9.4 78 165-248 69-148 (344)
359 2pln_A HP1043, response regula 28.5 1.9E+02 0.0064 24.6 8.2 54 180-246 30-83 (137)
360 1vlv_A Otcase, ornithine carba 28.1 5.1E+02 0.017 26.6 12.7 133 31-198 58-198 (325)
361 2x7x_A Sensor protein; transfe 28.0 1.6E+02 0.0056 30.0 8.9 80 164-248 6-88 (325)
362 3kbq_A Protein TA0487; structu 28.0 1.3E+02 0.0045 27.7 7.0 63 165-232 4-71 (172)
363 2dri_A D-ribose-binding protei 27.6 1.4E+02 0.0049 29.4 8.1 79 165-248 2-83 (271)
364 3pzy_A MOG; ssgcid, seattle st 27.4 84 0.0029 28.8 5.6 63 165-232 8-75 (164)
365 5nul_A Flavodoxin; electron tr 27.2 1.6E+02 0.0053 25.6 7.4 81 167-261 1-90 (138)
366 2rjo_A Twin-arginine transloca 27.2 98 0.0034 31.9 7.0 79 165-248 6-89 (332)
367 3hcw_A Maltose operon transcri 27.1 81 0.0028 31.8 6.2 78 165-248 8-92 (295)
368 1sg6_A Pentafunctional AROM po 27.0 2.1E+02 0.0072 30.4 9.6 96 159-259 31-140 (393)
369 3mwb_A Prephenate dehydratase; 27.0 1.1E+02 0.0037 31.4 6.8 85 700-789 6-101 (313)
370 3t6k_A Response regulator rece 26.9 2.4E+02 0.0082 23.9 8.6 56 180-246 16-73 (136)
371 2i6u_A Otcase, ornithine carba 26.8 5.2E+02 0.018 26.3 13.1 133 31-198 39-179 (307)
372 4f2g_A Otcase 1, ornithine car 26.7 1.8E+02 0.0063 29.7 8.5 129 32-198 46-184 (309)
373 2j48_A Two-component sensor ki 26.5 2.1E+02 0.0071 23.1 7.9 57 180-247 13-71 (119)
374 3h5o_A Transcriptional regulat 26.5 1.4E+02 0.0047 30.8 8.0 80 163-248 61-142 (339)
375 1duv_G Octase-1, ornithine tra 26.5 5.5E+02 0.019 26.4 13.2 133 31-198 44-186 (333)
376 3out_A Glutamate racemase; str 26.0 1E+02 0.0035 30.9 6.4 38 88-125 61-99 (268)
377 3bbl_A Regulatory protein of L 25.7 90 0.0031 31.3 6.2 78 165-248 5-88 (287)
378 2hsg_A Glucose-resistance amyl 25.5 1.1E+02 0.0037 31.5 6.9 79 164-248 60-140 (332)
379 3c3k_A Alanine racemase; struc 25.1 2E+02 0.007 28.5 8.8 78 164-248 8-87 (285)
380 2qmw_A PDT, prephenate dehydra 24.9 1.8E+02 0.0063 29.0 7.9 83 701-789 4-97 (267)
381 3s5p_A Ribose 5-phosphate isom 24.9 2.7E+02 0.0094 25.3 8.2 61 173-233 28-89 (166)
382 1oi7_A Succinyl-COA synthetase 24.7 2.6E+02 0.0088 28.2 9.3 133 81-234 73-210 (288)
383 1xah_A Sadhqs, 3-dehydroquinat 24.7 1.9E+02 0.0064 30.3 8.5 110 139-260 11-126 (354)
384 2q9u_A A-type flavoprotein; fl 24.5 3.3E+02 0.011 28.9 10.8 87 163-258 255-349 (414)
385 3muq_A Uncharacterized conserv 24.2 40 0.0014 33.2 2.9 75 491-574 18-95 (237)
386 2xwv_A Sialic acid-binding per 24.1 1E+02 0.0034 31.7 6.2 88 688-787 133-221 (312)
387 4h31_A Otcase, ornithine carba 23.9 6.3E+02 0.022 26.3 12.2 132 32-198 71-212 (358)
388 3hly_A Flavodoxin-like domain; 23.8 1.3E+02 0.0046 27.1 6.4 83 166-258 2-90 (161)
389 3bil_A Probable LACI-family tr 23.7 1.3E+02 0.0044 31.3 7.1 78 165-248 67-146 (348)
390 3qbe_A 3-dehydroquinate syntha 23.7 3.4E+02 0.012 28.5 10.2 111 138-259 22-138 (368)
391 2zay_A Response regulator rece 23.7 2.1E+02 0.0073 24.5 7.7 55 180-245 20-76 (147)
392 2vvr_A Ribose-5-phosphate isom 23.5 3.4E+02 0.012 24.2 8.5 30 173-202 8-37 (149)
393 2qip_A Protein of unknown func 23.4 3.4E+02 0.012 24.5 9.0 95 153-248 36-134 (165)
394 2ef0_A Ornithine carbamoyltran 23.3 5E+02 0.017 26.3 10.9 131 32-198 46-184 (301)
395 3gyb_A Transcriptional regulat 23.2 1.8E+02 0.0062 28.7 8.0 116 33-160 120-243 (280)
396 3lua_A Response regulator rece 23.1 1.7E+02 0.0059 24.9 6.9 55 180-245 16-75 (140)
397 2qxy_A Response regulator; reg 23.0 3.3E+02 0.011 23.0 8.8 57 180-247 16-73 (142)
398 3eod_A Protein HNR; response r 23.0 2.1E+02 0.0073 23.8 7.4 70 163-247 6-77 (130)
399 3he8_A Ribose-5-phosphate isom 22.9 2.9E+02 0.0099 24.7 7.9 60 173-233 7-68 (149)
400 2jfz_A Glutamate racemase; cel 22.7 1.2E+02 0.004 30.2 6.1 37 89-125 55-91 (255)
401 1uuy_A CNX1, molybdopterin bio 22.7 1.2E+02 0.0041 27.7 5.8 75 165-243 6-96 (167)
402 3rf7_A Iron-containing alcohol 22.7 1.4E+02 0.005 31.5 7.1 96 139-243 28-131 (375)
403 3e3m_A Transcriptional regulat 22.4 2.3E+02 0.0079 29.3 8.9 80 163-248 69-150 (355)
404 3sr0_A Adenylate kinase; phosp 22.4 37 0.0013 32.6 2.2 30 97-126 2-31 (206)
405 3clk_A Transcription regulator 22.0 92 0.0031 31.2 5.4 79 165-248 9-89 (290)
406 3ph3_A Ribose-5-phosphate isom 21.9 3E+02 0.01 25.1 7.9 60 173-233 27-88 (169)
407 2b4l_A Glycine betaine-binding 21.9 1.1E+02 0.0037 30.7 5.7 58 463-543 163-220 (268)
408 2bon_A Lipid kinase; DAG kinas 21.9 2.1E+02 0.0073 29.5 8.2 75 165-246 30-105 (332)
409 3cvg_A Putative metal binding 21.9 53 0.0018 33.5 3.4 73 492-573 33-115 (294)
410 1jlj_A Gephyrin; globular alph 21.8 2.5E+02 0.0084 26.3 7.8 69 161-233 11-88 (189)
411 1gud_A ALBP, D-allose-binding 21.7 1.7E+02 0.0057 29.3 7.3 81 165-248 2-85 (288)
412 3grf_A Ornithine carbamoyltran 21.6 4.5E+02 0.015 27.0 10.3 131 32-198 45-192 (328)
413 2yv1_A Succinyl-COA ligase [AD 21.6 2.5E+02 0.0086 28.4 8.4 132 81-233 79-215 (294)
414 2o20_A Catabolite control prot 21.5 2.1E+02 0.0073 29.2 8.3 80 163-248 62-143 (332)
415 2qr3_A Two-component system re 21.5 2.6E+02 0.0089 23.6 7.8 57 180-247 15-78 (140)
416 3umf_A Adenylate kinase; rossm 21.4 31 0.0011 33.5 1.4 31 96-126 30-60 (217)
417 1dbq_A Purine repressor; trans 21.3 2.4E+02 0.0082 27.9 8.5 64 165-233 8-73 (289)
418 3to5_A CHEY homolog; alpha(5)b 21.2 3.1E+02 0.011 23.8 8.0 58 180-247 24-83 (134)
419 3hdv_A Response regulator; PSI 21.1 2.5E+02 0.0085 23.7 7.5 57 180-247 19-78 (136)
420 3dnf_A ISPH, LYTB, 4-hydroxy-3 21.1 1.3E+02 0.0043 30.5 5.8 52 73-124 186-239 (297)
421 2qmx_A Prephenate dehydratase; 21.0 2.3E+02 0.008 28.5 7.9 78 701-789 7-95 (283)
422 1o1x_A Ribose-5-phosphate isom 20.7 3.4E+02 0.012 24.4 7.9 31 172-202 18-48 (155)
423 3o1i_D Periplasmic protein TOR 20.7 1E+02 0.0035 31.1 5.4 80 165-248 6-88 (304)
424 2qv7_A Diacylglycerol kinase D 20.6 3.4E+02 0.012 27.9 9.6 75 164-245 24-102 (337)
425 1xrs_B D-lysine 5,6-aminomutas 20.5 5.1E+02 0.017 25.6 10.1 85 166-258 122-222 (262)
426 4a29_A Engineered retro-aldol 20.4 2.9E+02 0.0099 27.2 8.0 84 155-249 69-155 (258)
427 3kto_A Response regulator rece 20.3 2.1E+02 0.0073 24.2 6.8 57 180-247 18-78 (136)
428 2rjn_A Response regulator rece 20.2 3.7E+02 0.013 23.2 8.7 57 180-247 19-77 (154)
429 3iv7_A Alcohol dehydrogenase I 20.2 71 0.0024 33.8 4.0 95 153-260 26-122 (364)
No 1
>3kg2_A Glutamate receptor 2; ION channel, membrane protein, cell membrane, glycoprotein, transport, membrane, postsynaptic cell membrane, editing; HET: ZK1 NAG BMA; 3.60A {Rattus norvegicus}
Probab=100.00 E-value=9.9e-98 Score=923.70 Aligned_cols=764 Identities=21% Similarity=0.345 Sum_probs=633.0
Q ss_pred eeEEEEEEeeCCCcchhHHHHHHHHHHHHHhcCCCCCCCCEEEEEEccCCC-ChHHHHHHHHHHHhcCcEEEEcCCChhH
Q 002309 30 AVVNVGALFTLDSTIGRVAKIAIEEAVKDVNSNSSILHGTKLNITMQSSNC-SGFIGMVEALRFMETDIVAIIGPQCSTV 108 (938)
Q Consensus 30 ~~i~IG~i~~~~~~~g~~~~~a~~~Av~~iN~~~~il~g~~l~~~~~D~~~-~~~~a~~~a~~li~~~V~aviGp~~s~~ 108 (938)
++|+||+++|++.. ..+.|+++|+|+||+++ ++|+++++|+++ ++..|++++|++++++|.|||||.+|..
T Consensus 1 ~~ikIG~l~~~tg~---~~~~a~~lAveeiN~~~-----~~l~~~~~D~~~~~~~~a~~~~~~l~~~~V~aiiG~~~S~~ 72 (823)
T 3kg2_A 1 NSIQIGGLFPRGAD---QEYSAFRVGMVQFSTSE-----FRLTPHIDNLEVANSFAVTNAFCSQFSRGVYAIFGFYDKKS 72 (823)
T ss_dssp CEEEEEEEEETTCH---HHHHHHHHHHHHTCCSS-----CEEEEEEEEECTTCHHHHHHHHHHHHHTTCSEEEECCCTTT
T ss_pred CcceEEEEeCCCCh---HHHHHHHHHHHHHhcCC-----eEEEEEEEEcCCCChHHHHHHHHHHHhcCcEEEEcCCChhH
Confidence 37999999999865 78999999999999986 899999999999 8999999999999999999999999999
Q ss_pred HHHHHHhhccCCccEEEcccCCCCCCCCCCCceEEecCCchHHHHHHHHHHHhcCCcEEEEEEEcCccccchHHHHHHHH
Q 002309 109 AHIVSYVSNELQVPLLSFGVTDPTLSSLQYPFFVRTTQSDSYQMTAVAEMVSYYGWNAVSVIFVDNEYGRNGVSALNDKL 188 (938)
Q Consensus 109 ~~~va~~~~~~~iP~Is~~~~~~~l~~~~~p~~~r~~ps~~~~~~ai~~~l~~~~w~~vaii~~d~~~g~~~~~~l~~~l 188 (938)
+.+++++++.++||+|++ +.+.+ ..+||+||+.|+ ++.++++++++|||++|++|| |++||....+.+.+++
T Consensus 73 ~~a~~~i~~~~~iP~is~--~~~~~--~~~~~~~r~~p~---~~~a~~~l~~~~gw~~v~ii~-d~~~g~~~~~~~~~~~ 144 (823)
T 3kg2_A 73 VNTITSFCGTLHVSFITP--SFPTD--GTHPFVIQMRPD---LKGALLSLIEYYQWDKFAYLY-DSDRGLSTLQAVLDSA 144 (823)
T ss_dssp HHHHHHHHHHTTCEEEEC--SCCCS--SCCSSEEECSCC---CHHHHHHHHHHTTCSEEEEEE-CGGGCTHHHHHHHHHH
T ss_pred HHHHHHHhhcCCCceeec--ccCCC--CCCceEEEeCCC---HHHHHHHHHHHCCCCEEEEEE-eCChhHHHHHHHHHHh
Confidence 999999999999999997 33333 367899999998 899999999999999999999 7889999999999999
Q ss_pred hhcceEEEEEeecCCCCCCChhhHHHHHHHHhcCCceEEEEEeChhhHHHHHHHHHHcCCCCCCeEEEEeCcchhcccCC
Q 002309 189 AERRCRISYKSGIPPESGVNTGYVMDLLVKVALMESRVIVLHVSPSLGFQVFSVAKYLGMMGNGYVWIATDWLAYMLDSA 268 (938)
Q Consensus 189 ~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~lk~~~~~viv~~~~~~~~~~~l~~a~~~g~~~~~~~wi~~~~~~~~~~~~ 268 (938)
++.|+||+....++.+...++.|+..++++|+++++|+|++++.+..+..++++|+++||+.++|+||.++......+.
T Consensus 145 ~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~i~~~~~~vii~~~~~~~~~~~~~~a~~~g~~~~~~~~i~~~~~~~~~~~- 223 (823)
T 3kg2_A 145 AEKKWQVTAINVGNINNDKKDETYRSLFQDLELKKERRVILDCERDKVNDIVDQVITIGKHVKGYHYIIANLGFTDGDL- 223 (823)
T ss_dssp HHTTCEEEEEECSSCCSSSTTTTTTTHHHHTTTTTCCEEEEECCHHHHHHHHHHHHHHTTTBTTCEEEECSSBSSSSCC-
T ss_pred hccCCceEEEEeecCCCCccchhHHHHHHHHHhcCCeEEEEECCHHHHHHHHHHHHHcCcCCCCeEEEEecccccccch-
Confidence 9999999998877654222367899999999999999999999999999999999999999999999999854332222
Q ss_pred CCChhhhhccccEEEEEEcCCCChhhHHHHHHHhhhcCC------CCCCCchhhHHhHHHHHHHHHHHHHHhcCCccccc
Q 002309 269 SLPSETLESMQGVLVLRQHIPESDRKKNFLSRWKNLTGG------SLGMNSYGLYAYDSVWLLAHAIESFFNQGGKISFS 342 (938)
Q Consensus 269 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~f~~~~~~~~~~------~~~~~~~~~~~YDav~~~a~Al~~~~~~~~~~~~~ 342 (938)
....+...|++++.++.++.+.+++|.++|+++++. ...++.+++++||||+++|+|+++++.++......
T Consensus 224 ---~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~a~~~YDAv~~la~Al~~~~~~~~~~~~~ 300 (823)
T 3kg2_A 224 ---LKIQFGGAEVSGFQIVDYDDSLVSKFIERWSTLEEKEYPGAHTATIKYTSALTYDAVQVMTEAFRNLRKQRIEISRR 300 (823)
T ss_dssp ---SSSSSSBCEEEEEESSCTTSHHHHHHHHHHTTSCTTTSTTCCSSCCCHHHHHHHHHHHHHHHHHHHHHTTTCCCCCS
T ss_pred ---HHhhcCCCCceEeeeecCCchHHHHHHHHHHhhcccccCCCCccccchhhHHHHHHHHHHHHHHHHHHhhccccccC
Confidence 233345667999999999999999999999988731 12356789999999999999999998765443211
Q ss_pred CCccccccCCCccccCCc--cccCchHHHHHHHhcCcccccccceEEcCCCCCccceEEEEEeeccceEEEEEeeCCCCC
Q 002309 343 NDSRLKTMEGGNLHLGAM--SIFDDGMLLLGNILQSNLVGLTGPLKFNSDRSLIHAAYDIINVIGTGFRMIGYWSNYSGL 420 (938)
Q Consensus 343 ~~~~~~~~~~~~~~~~~~--~~~~~g~~l~~~l~~~~f~G~tG~v~F~~~g~~~~~~~~I~~~~~~~~~~Vg~w~~~~g~ 420 (938)
.....|... .+|.+|.+|+++|++++|+|++|+++||++|++....|+|++++++++++||.|++..|+
T Consensus 301 ---------~~~~~c~~~~~~~~~~g~~l~~~l~~~~f~G~tG~i~fd~~G~~~~~~~~I~~~~~~g~~~vg~w~~~~g~ 371 (823)
T 3kg2_A 301 ---------GNAGDCLANPAVPWGQGVEIERALKQVQVEGLSGNIKFDQNGKRINYTINIMELKTNGPRKIGYWSEVDKM 371 (823)
T ss_dssp ---------SCCCCTTCSSCCCCTHHHHHHHHHTTCCCEETTEECCBCSSSCBCSCEEEEEEECSSCEEEEEEEETTTEE
T ss_pred ---------CCCCCccCCCCCcccchHHHHHHHHhcccCCcccCeEECCCCcccccEEEEEEEcCCCCeeEEEEcCCCCc
Confidence 112234443 567789999999999999999999999999999889999999999999999999998875
Q ss_pred ccCCCcccccCCCCCCccccccceeEeCCCCccCCCcccccCCCceeEEEecccccccceeeec------cCCcceEeee
Q 002309 421 SKEPPETLYAQPFNRSSTIQHLHSVIWPGETLSKPRGWVFPNNGKLLKIGVPNRASYREFVSKV------RGSDMFQGFC 494 (938)
Q Consensus 421 ~~~~~~~~~~~~~~~~~~~~~l~~i~w~g~~~~~P~~~~~~~~g~~lrv~~~~~~~~~~~~~~~------~~~~~~~G~~ 494 (938)
....+ . .....|++|+|++...+ ||.+.. ++++++.|||
T Consensus 372 ~~~~~------------------------------~--~~~~~~~~l~v~~~~~~---P~~~~~~~~~~~~~~~~~~G~~ 416 (823)
T 3kg2_A 372 VLTED------------------------------D--TSGLEQKTVVVTTILES---PYVMMKANHAALAGNERYEGYC 416 (823)
T ss_dssp EECCC------------------------------C--CSSCCCCCEEEEECCCT---TTSEECTTGGGCCGGGGEESHH
T ss_pred eeccC------------------------------c--ccccCCCEEEEEEecCC---CcEEEecCccccCCCCceEEEH
Confidence 42110 0 01245889999998654 444431 2477999999
Q ss_pred HHHHHHHHHhCCCCccEEEEecC-CC---CCCCChhHHHHhhhcceecEEeccEeeecCceeeeeeccceecccEEEEEe
Q 002309 495 IDVFTAAVNLLPYAVPYQFVAFG-DG---HKNPSYTQLVDSITTGVFDAVVGDITIVTNRTKIVDFSQPYAASGLVVVVP 570 (938)
Q Consensus 495 ~dll~~la~~l~f~~~~~~~~~~-~~---~~~~~~~~~i~~l~~g~~D~~~~~~~~t~~r~~~v~fs~p~~~~~~~~lv~ 570 (938)
+||++++++++||+++++.++.+ .| ..|++|++++++|.+|++|++++++++|++|.+.+|||.||+..++++++|
T Consensus 417 ~dl~~~~a~~l~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~l~~~~~D~~~~~~~~t~~R~~~~dfs~py~~~~~~~~v~ 496 (823)
T 3kg2_A 417 VDLAAEIAKHCGFKYKLTIVGDGKYGARDADTKIWNGMVGELVYGKADIAIAPLTITLVREEVIDFSKPFMSLGISIMIK 496 (823)
T ss_dssp HHHHHHHHHHHTCCEEEEECSSCCCCCBCTTTCCBCHHHHHHHTTSCSEECSCCBCCHHHHTTEEECSCSEEECEEEEEE
T ss_pred HHHHHHHHHHcCCcEEEEEccCCcccccCCCCCchhhHHHhhccccCcEEecceecchhheeeEEeccchhhCCEEEEEE
Confidence 99999999999998666655522 12 256789999999999999999999999999999999999999999999999
Q ss_pred ccC-CCCCcceeeccCchhhHHHHHHHHHHHHhhhheeecccCCCCCCCc--------------cccchhhhhHHHHHHH
Q 002309 571 FRK-LNTGAWAFLRPFSPLMWTVTACFFVVVGIVVWILEHRINDEFRGPP--------------KRQVITILWFSLSTLF 635 (938)
Q Consensus 571 ~~~-~~~~~~~~l~PF~~~vW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~l~ 635 (938)
++. ..++++.|+.||++++|++++++++++++++|+++|+.+.+|+.+. ..++.+++|+++++++
T Consensus 497 ~~~~~~~~~~~fl~Pf~~~vW~~i~~~~~~~~~~l~~~~~~~p~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 576 (823)
T 3kg2_A 497 KPQKSKPGVFSFLDPLAYEIWMCIVFAYIGVSVVLFLVSRFSPYEWHTEEFEDGRETQSSESTNEFGIFNSLWFSLGAFM 576 (823)
T ss_dssp CCCCCCCCGGGTTTTSCHHHHHHHHHHHHHHHTTGGGTC-----------------------CHHHHHHHHHHHTTTTSC
T ss_pred CCCcccccchHhhcCCchhHHHHHHHHHHHHHHHHHHHHhcChhhccCcccccccccccccccccccHHHHHHHHHHHHH
Confidence 987 5678999999999999999999999999999999998766654322 2347799999999999
Q ss_pred hhhhhhhhhhcccCccccchhHHHHHHHHHHHHHHhhhhhhhhhhhhcccccCCCCChHHhhhCCC-CeeEEeCchHHHH
Q 002309 636 FAHIAIFVILAEENTVSTLGRLVLIIWLFVVLIINSSYTASLTSILTVQQLYSPINGIESLRKSDD-PIGYQEGSFAEYY 714 (938)
Q Consensus 636 ~~~~~~~~~~~~~~p~s~s~R~~~~~w~~~~lil~s~Yta~L~s~Lt~~~~~~~i~s~~dL~~~~~-~i~~~~~s~~~~~ 714 (938)
+|+ ....|++.++|+++++||+|+||++++|||+|+|+||++++.++|+|++||.+++. ++++..++...++
T Consensus 577 ~~g-------~~~~p~~~~~R~~~~~w~~~~lil~~~Yta~L~s~Lt~~~~~~~I~s~~dL~~~~~i~~~~~~~~~~~~~ 649 (823)
T 3kg2_A 577 QQG-------ADISPRSLSGRIVGGVWWFFTLIIISSYTANLAAFLTVERMVSPIESAEDLSKQTEIAYGTLDSGSTKEF 649 (823)
T ss_dssp C-------------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCSSHHHHHCCSSEEECBSSSHHHHH
T ss_pred hcC-------CCcCCcchhhhhHHHHHHHHHHHHHHHHHHHHHHHhcccccCCCCCCHHHHhhCCCeeEEEEeCCcHHHH
Confidence 988 46689999999999999999999999999999999999999999999999998653 4666667777777
Q ss_pred HHHhccccc-cc----------ccccCCHHHHHHHHhcCCCCCceEEEEecchhHHHHHhcC-CcEEEeCccccccceEe
Q 002309 715 LSQELNISK-SR----------LVALRTPEDYAKALKDGPGKGGVAAVVDERPYVELFLSSQ-CSFRIVGQEFTKSGWGF 782 (938)
Q Consensus 715 ~~~~~~~~~-~~----------~~~~~~~~~~~~~l~~~~~~g~~~a~i~~~~~~~~~~~~~-~~l~~~~~~~~~~~~~~ 782 (938)
+.+. +... .+ ...+.+.+++++.+.+. ++.+|++.+.+.++|+..++ |+++++++.+...++++
T Consensus 650 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~A~~~~~~~~~y~~~~~~c~l~~v~~~~~~~~~~~ 725 (823)
T 3kg2_A 650 FRRS-KIAVFDKMWTYMRSAEPSVFVRTTAEGVARVRKS---KGKYAYLLESTMNEYIEQRKPCDTMKVGGNLDSKGYGI 725 (823)
T ss_dssp HHHC-CCHHHHHHHHHHHHCSSCCCBSSHHHHHHHHHTT---TTSEEEEEEHHHHHHHHTSTTCCEEEESCCSSCEEECC
T ss_pred HHhc-cchHHHHHHHHHHhcCCccccCCHHHHHHHHhcc---CCceEEEechHHHHHHHhcCCCceEEccccccccceeE
Confidence 7542 1111 11 11246889999999721 56789999999999988776 99999999999999999
Q ss_pred eecCCCcchhhHHHHHHhhhccCcHHHHHHhhcC-CCCCCCcccc--cccccccccchhhHHHHHHHHHHHHHHHHHHHH
Q 002309 783 AFPRDSPLAVDLSSAILELAENGDLQRIHDKWLM-KSSCSLENAE--LESDRLHLSSFWGLFLICGVACFIALVIYFLQI 859 (938)
Q Consensus 783 ~~~k~spl~~~i~~~il~l~e~G~~~~l~~~w~~-~~~c~~~~~~--~~~~~l~l~~~~g~f~il~~g~~la~~vf~~e~ 859 (938)
++||||||++.||++|++++|+|++++|.++|+. ...|...... ....+|+++++.|+|++|++|+++|+++|++|+
T Consensus 726 ~~~k~spl~~~~~~~il~l~e~G~~~~~~~~w~~~~~~c~~~~~~~~~~~~~L~l~~l~g~f~il~~g~~la~~vf~~E~ 805 (823)
T 3kg2_A 726 ATPKGSSLGTPVNLAVLKLSEQGLLDKLKNKWWYDKGECGAKDSGSKEKTSALSLSNVAGVFYILVGGLGLAMLVALIEF 805 (823)
T ss_dssp EEETTCSSHHHHHHHHHHHHHTTHHHHHHHHHHTTSCSCSSTTTSTTTCCCSCCSHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred eecCCChHHHHHHHHHHHHHhCCcHHHHHHhhCcCCCCCCCCCccccccCCccchhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999997 7788876432 356799999999999999999999999999999
Q ss_pred HHHhhhcCC
Q 002309 860 MQQLCKSAP 868 (938)
Q Consensus 860 ~~~~~~~~~ 868 (938)
+|++++.++
T Consensus 806 ~~~~~~~~~ 814 (823)
T 3kg2_A 806 CYKSRAEAK 814 (823)
T ss_dssp HHC------
T ss_pred HHHcchhhh
Confidence 998776654
No 2
>3o21_A Glutamate receptor 3; periplasmatic binding protein, oligomerization, membrane, TR protein; HET: NAG; 2.20A {Rattus norvegicus} PDB: 3p3w_A
Probab=100.00 E-value=1.1e-50 Score=454.90 Aligned_cols=367 Identities=15% Similarity=0.240 Sum_probs=317.2
Q ss_pred CeeEEEEEEeeCCCcchhHHHHHHHHHHHHHhcCCCC-CCCCEEEEEEccCCC-ChHHHHHHHHHHHhcCcEEEEcCCCh
Q 002309 29 PAVVNVGALFTLDSTIGRVAKIAIEEAVKDVNSNSSI-LHGTKLNITMQSSNC-SGFIGMVEALRFMETDIVAIIGPQCS 106 (938)
Q Consensus 29 ~~~i~IG~i~~~~~~~g~~~~~a~~~Av~~iN~~~~i-l~g~~l~~~~~D~~~-~~~~a~~~a~~li~~~V~aviGp~~s 106 (938)
+++|+||+++|++.. ..+.|+++|+|+||+++++ |+|++|+++++|++| |+..|+..+++|++++|.+||||.+|
T Consensus 3 ~~~i~IG~i~~~sg~---~~~~a~~lAv~eiN~~g~ill~g~~l~~~~~D~~~~d~~~a~~~a~~li~~~V~aiiG~~~S 79 (389)
T 3o21_A 3 PNTISIGGLFMRNTV---QEHSAFRFAVQLYNTNQNTTEKPFHLNYHVDHLDSSNSFSVTNAFCSQFSRGVYAIFGFYDQ 79 (389)
T ss_dssp CSEEEEEEEECTTCH---HHHHHHHHHHHHHHSCCCTTTCSSEEEEEEEECCTTCHHHHHHHHHHHHTTTCSCEEECCCT
T ss_pred CceeEEEEEeCCCCH---HHHHHHHHHHHHHhcCccccCCCcEEEEEEEecCCCChHHHHHHHHHHHhcCcEEEEeCCCh
Confidence 679999999999865 7899999999999999999 699999999999988 99999999999999999999999999
Q ss_pred hHHHHHHHhhccCCccEEEcccCCCCCCCCCCCceEEecCCchHHHHHHHHHHHhcCCcEEEEEEEcCccccchHHHHHH
Q 002309 107 TVAHIVSYVSNELQVPLLSFGVTDPTLSSLQYPFFVRTTQSDSYQMTAVAEMVSYYGWNAVSVIFVDNEYGRNGVSALND 186 (938)
Q Consensus 107 ~~~~~va~~~~~~~iP~Is~~~~~~~l~~~~~p~~~r~~ps~~~~~~ai~~~l~~~~w~~vaii~~d~~~g~~~~~~l~~ 186 (938)
..+.+++++++.++||+|+++. |.++ ..+|.||+.|+ |+.++++++++++|++|++|| |++||...++.+.+
T Consensus 80 ~~~~a~~~i~~~~~iP~Is~s~--~~~~--~~~~~~~~~p~---~~~a~~~~~~~~gw~~vaii~-d~~~g~~~~~~~~~ 151 (389)
T 3o21_A 80 MSMNTLTSFCGALHTSFVTPSF--PTDA--DVQFVIQMRPA---LKGAILSLLSYYKWEKFVYLY-DTERGFSVLQAIME 151 (389)
T ss_dssp TTHHHHHHHHHHHTCCEEECSC--CCSS--CCSSEEECSCC---SHHHHHHHHHHHTCCEEEEEE-CSTTCSHHHHHHHH
T ss_pred hHHHHHHHHhccCCCceeecCC--CCcc--CCceEEEEccC---HHHHHHHHHHhCCCCEEEEEE-cCcHHHHHHHHHHH
Confidence 9999999999999999998753 4443 34566777776 899999999999999999999 88999999999999
Q ss_pred HHhhcceEEEEEeecCCCCCCChhhHHHHHHHHhcCCceEEEEEeChhhHHHHHHHHHHcCCCCCCeEEEEeCcchhccc
Q 002309 187 KLAERRCRISYKSGIPPESGVNTGYVMDLLVKVALMESRVIVLHVSPSLGFQVFSVAKYLGMMGNGYVWIATDWLAYMLD 266 (938)
Q Consensus 187 ~l~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~lk~~~~~viv~~~~~~~~~~~l~~a~~~g~~~~~~~wi~~~~~~~~~~ 266 (938)
++++.|+||+....++.. .+.|+.++|++|+.+++|+|++++....+..++++|+++||+.++|+||+++.+....+
T Consensus 152 ~~~~~g~~v~~~~~~~~~---~~~d~~~~l~~ik~~~~~vii~~~~~~~~~~i~~qa~~~g~~~~~~~~i~~~~~~~~~~ 228 (389)
T 3o21_A 152 AAVQNNWQVTARSVGNIK---DVQEFRRIIEEMDRRQEKRYLIDCEVERINTILEQVVILGKHSRGYHYMLANLGFTDIL 228 (389)
T ss_dssp HHHHTTCEEEEEECTTCC---CTHHHHHHHHHHHTTTCCEEEEESCHHHHHHHHHHHHHHCSCSTTCEEEECCTTGGGCC
T ss_pred HhhcCCCeEEEEEecCCC---CcHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHHHHcCcccCCeEEEEccCCccccc
Confidence 999999999988776542 35689999999999999999999999999999999999999999999999886544433
Q ss_pred CCCCChhhhhccccEEEEEEcCCCChhhHHHHHHHhhhcCCC------CCCCchhhHHhHHHHHHHHHHHHHHhcCCccc
Q 002309 267 SASLPSETLESMQGVLVLRQHIPESDRKKNFLSRWKNLTGGS------LGMNSYGLYAYDSVWLLAHAIESFFNQGGKIS 340 (938)
Q Consensus 267 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~f~~~~~~~~~~~------~~~~~~~~~~YDav~~~a~Al~~~~~~~~~~~ 340 (938)
. ........|++++.++.++.+.+++|.++|+++++.. ..++.+++++||||+++|+|++++..++..+.
T Consensus 229 ~----~~~~~~~~~~~~~~~~~~~~~~~~~F~~~~~~~~~~~~~~~~~~~~~~~a~~~YDAv~~~a~Al~~~~~~~~~~~ 304 (389)
T 3o21_A 229 L----ERVMHGGANITGFQIVNNENPMVQQFIQRWVRLDEREFPEAKNAPLKYTSALTHDAILVIAEAFRYLRRQRVDVS 304 (389)
T ss_dssp C----HHHHHTTCEEEEEESCCTTCHHHHHHHHHHTTSCTTTSTTSSSSCCCHHHHHHHHHHHHHHHHHHHHHHTTCCCC
T ss_pred H----HHHhcCCcceEEEEEecCCChhHHHHHHHHHhccccccCCCCCCccchhHHHHHHHHHHHHHHHHHHHhhCcccc
Confidence 2 2344566789999988999999999999999887311 13467899999999999999999986544332
Q ss_pred ccCCccccccCCCcccc--CCccccCchHHHHHHHhcCcccccccceEEcCCCCCccceEEEEEeeccceEEEEEeeCCC
Q 002309 341 FSNDSRLKTMEGGNLHL--GAMSIFDDGMLLLGNILQSNLVGLTGPLKFNSDRSLIHAAYDIINVIGTGFRMIGYWSNYS 418 (938)
Q Consensus 341 ~~~~~~~~~~~~~~~~~--~~~~~~~~g~~l~~~l~~~~f~G~tG~v~F~~~g~~~~~~~~I~~~~~~~~~~Vg~w~~~~ 418 (938)
.. .....| +...+|.+|.+|+++|++++|+|++|+++||++|++....|+|+++.++++++||+|++..
T Consensus 305 ~~---------~~~~~~~~~~~~~~~~g~~l~~~l~~~~f~G~tG~i~Fd~~G~~~~~~~~i~~~~~~g~~~VG~w~~~~ 375 (389)
T 3o21_A 305 RR---------GSAGDCLANPAVPWSQGIDIERALKMVQVQGMTGNIQFDTYGRRTNYTIDVYEMKVSGSRKAGYWNEYE 375 (389)
T ss_dssp --------------CCSCSSSCCCTTTTHHHHHHHHTCCEEETTEEECBCTTSBBCSCCEEEEEEETTEEEEEEEEETTT
T ss_pred cC---------CCCCcCCCCCCCCCCCcHHHHHHHHhCcccccceeeeeCCCCCcccceEEEEEEcCCCceeeeEEcCCC
Confidence 11 111234 3456788899999999999999999999999999998899999999999999999999999
Q ss_pred CCcc
Q 002309 419 GLSK 422 (938)
Q Consensus 419 g~~~ 422 (938)
|++.
T Consensus 376 g~~~ 379 (389)
T 3o21_A 376 RFVP 379 (389)
T ss_dssp EEEC
T ss_pred Cccc
Confidence 9764
No 3
>4gpa_A Glutamate receptor 4; PBP fold, ligand-gated ION channel, ION transport, transmembrane AMPA receptor regulating proteins, cornichons, ckamp44; HET: NAG; 2.25A {Rattus norvegicus}
Probab=100.00 E-value=1.4e-48 Score=440.10 Aligned_cols=373 Identities=16% Similarity=0.203 Sum_probs=319.5
Q ss_pred CCeeEEEEEEeeCCCcchhHHHHHHHHHHHHHhcCCCCC-CCCEEEEEEccCC-CChHHHHHHHHHHHhcCcEEEEcCCC
Q 002309 28 RPAVVNVGALFTLDSTIGRVAKIAIEEAVKDVNSNSSIL-HGTKLNITMQSSN-CSGFIGMVEALRFMETDIVAIIGPQC 105 (938)
Q Consensus 28 ~~~~i~IG~i~~~~~~~g~~~~~a~~~Av~~iN~~~~il-~g~~l~~~~~D~~-~~~~~a~~~a~~li~~~V~aviGp~~ 105 (938)
.|++|+||++||.+. .+...|+++|||+||+++++| ++.+|.+...|++ +++..+++.+|++++++|.|||||.+
T Consensus 2 ~P~~I~IG~lf~~~~---~~~~~a~~~Av~~iN~~~~ilg~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~V~aiiG~~~ 78 (389)
T 4gpa_A 2 FPSSVQIGGLFIRNT---DQEYTAFRLAIFLHNTSPNASEAPFNLVPHVDNIETANSFAVTNAFCSQYSRGVFAIFGLYD 78 (389)
T ss_dssp CCSEEEEEEEECTTC---HHHHHHHHHHHHHHHTCSCTTTCSSEEEEEEEECSSCCHHHHHHHHHHHHHTTCSEEEECCC
T ss_pred CCCeEEEEEEEcCCC---hHHHHHHHHHHHHHHhCCCCCCCCEEEEEEEecCCCchHHHHHHHHHHHHhcCCEEEEeCCc
Confidence 478999999999875 567899999999999999998 3456666655544 58889999999999999999999999
Q ss_pred hhHHHHHHHhhccCCccEEEcccCCCCCCCCCCCceEEecCCchHHHHHHHHHHHhcCCcEEEEEEEcCccccchHHHHH
Q 002309 106 STVAHIVSYVSNELQVPLLSFGVTDPTLSSLQYPFFVRTTQSDSYQMTAVAEMVSYYGWNAVSVIFVDNEYGRNGVSALN 185 (938)
Q Consensus 106 s~~~~~va~~~~~~~iP~Is~~~~~~~l~~~~~p~~~r~~ps~~~~~~ai~~~l~~~~w~~vaii~~d~~~g~~~~~~l~ 185 (938)
|..+.+++++++.++||+|+++++.+.. .+|++++|+. +++++++++++|+|++|++||+++.++ ...+.+.
T Consensus 79 S~~~~~v~~i~~~~~ip~is~~~~~~~~--~~~~~~~~~~-----~~~a~~~l~~~~~w~~vaii~~~d~~~-~~~~~~~ 150 (389)
T 4gpa_A 79 KRSVHTLTSFCSALHISLITPSFPTEGE--SQFVLQLRPS-----LRGALLSLLDHYEWNCFVFLYDTDRGY-SILQAIM 150 (389)
T ss_dssp TTTHHHHHHHHHHTTCEEEECSCCCSSC--CSSEEECSCC-----CHHHHHHHHHHTTCCEEEEEECSTTCS-HHHHHHH
T ss_pred cHHHHHHHHHHHHhCCCceecccccccc--ccCCccccCC-----HHHHHHHHHHHcCCcEEEEEEecchhh-HHHHHHH
Confidence 9999999999999999999986655432 3456555543 357899999999999999999777665 4677888
Q ss_pred HHHhhcceEEEEEeecCCCCCCChhhHHHHHHHHhcCCceEEEEEeChhhHHHHHHHHHHcCCCCCCeEEEEeCcchhcc
Q 002309 186 DKLAERRCRISYKSGIPPESGVNTGYVMDLLVKVALMESRVIVLHVSPSLGFQVFSVAKYLGMMGNGYVWIATDWLAYML 265 (938)
Q Consensus 186 ~~l~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~lk~~~~~viv~~~~~~~~~~~l~~a~~~g~~~~~~~wi~~~~~~~~~ 265 (938)
+.+.+.|++|+....++.. ..++..+|++++.+++++|++.+....+..++++|+++|++.++|+|++++++....
T Consensus 151 ~~~~~~g~~v~~~~~~~~~----~~d~~~~l~~i~~~~~~vIv~~~~~~~~~~il~~a~~~g~~~~~~~~i~~~~~~~~~ 226 (389)
T 4gpa_A 151 EKAGQNGWHVSAICVENFN----DVSYRQLLEELDRRQEKKFVIDCEIERLQNILEQIVSVGKHVKGYHYIIANLGFKDI 226 (389)
T ss_dssp HHHHTTTCEEEEEECTTCC----HHHHHHHHHHHHHHTCCEEEEECCHHHHHHHHHHHHHHTCSBTTCEEEECSSBGGGS
T ss_pred HHHHhcCceEEEEeecCCc----chhHHHHHHHhhccCCcEEEEEechhHHHHHHHHHHHhCCCCCceEEEEeCccccch
Confidence 8999999999988777655 889999999999999999999999999999999999999999999999998876654
Q ss_pred cCCCCChhhhhccccEEEEEEcCCCChhhHHHHHHHhhhcC-----CCCCCCchhhHHhHHHHHHHHHHHHHHhcCCccc
Q 002309 266 DSASLPSETLESMQGVLVLRQHIPESDRKKNFLSRWKNLTG-----GSLGMNSYGLYAYDSVWLLAHAIESFFNQGGKIS 340 (938)
Q Consensus 266 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~f~~~~~~~~~-----~~~~~~~~~~~~YDav~~~a~Al~~~~~~~~~~~ 340 (938)
.. ........|+.++....+..+.+++|.++|++.+. .+..++.+++++||||+++|+|++++.+++....
T Consensus 227 ~~----~~~~~~~~~i~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~a~~YDAV~~~A~Al~~~~~~~~~~~ 302 (389)
T 4gpa_A 227 SL----ERFIHGGANVTGFQLVDFNTPMVTKLMDRWKKLDQREYPGSETPPKYTSALTYDGVLVMAETFRSLRRQKIDIS 302 (389)
T ss_dssp CC----HHHHHHBCEEEEEECSCTTSHHHHHHHHHHTTSCTTTSTTTTSCCCHHHHHHHHHHHHHHHHHHHHHHTTCCCC
T ss_pred hh----hhhhhcccceEEEEeecCCChHHHHHHHHHHHHhhhhcccCCCChhHHHHHHHHHHHHHHHHHHHHHhhccccc
Confidence 44 55667788999999999999999999999998764 2456788999999999999999999988765432
Q ss_pred ccCCccccccCCCccccCCccccCchHHHHHHHhcCcccccccceEEcCCCCCccceEEEEEeeccceEEEEEeeCCCCC
Q 002309 341 FSNDSRLKTMEGGNLHLGAMSIFDDGMLLLGNILQSNLVGLTGPLKFNSDRSLIHAAYDIINVIGTGFRMIGYWSNYSGL 420 (938)
Q Consensus 341 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~l~~~~f~G~tG~v~F~~~g~~~~~~~~I~~~~~~~~~~Vg~w~~~~g~ 420 (938)
. ......+.|....+|.+|..|+++|++++|+|++|+|+||++|+|.+..|+|+|++++++++||+|++.+||
T Consensus 303 ~-------~~~~~~~~~~~~~~~~~G~~l~~~l~~v~f~G~tG~v~Fd~~G~r~~~~~~I~~l~~~~~~~VG~W~~~~gl 375 (389)
T 4gpa_A 303 R-------RGNAGDCLANPAAPWGQGIDMERTLKQVRIQGLTGNVQFDHYGRRVNYTMDVFELKSTGPRKVGYWNDMDKL 375 (389)
T ss_dssp C-------TTCCCCTTCSSCCCCTTHHHHHHHHHTCEEEETTEEEEBCTTSCBCSCEEEEEEEETTEEEEEEEEETTTEE
T ss_pred c-------cCCccccccCCCcccchHHHHHHHHHhCceecCceeEEECCCCCCCCCEEEEEEEECCEEEEEEEEECCCCe
Confidence 1 123445677888899999999999999999999999999999999889999999999999999999999998
Q ss_pred ccCCCc
Q 002309 421 SKEPPE 426 (938)
Q Consensus 421 ~~~~~~ 426 (938)
.+..++
T Consensus 376 ~~~~~~ 381 (389)
T 4gpa_A 376 VLIQDR 381 (389)
T ss_dssp EECCC-
T ss_pred EECCCC
Confidence 776553
No 4
>3om0_A Glutamate receptor, ionotropic kainate 5; membrane protein, ION channel; HET: NAG BMA GOL; 1.40A {Rattus norvegicus} PDB: 3om1_A* 3qlu_A* 3qlv_A
Probab=100.00 E-value=9.4e-49 Score=441.27 Aligned_cols=369 Identities=18% Similarity=0.242 Sum_probs=309.5
Q ss_pred eeEEEEEEeeCCCcchhHHHHHHHHHHHHHhcCCCCCCCCEEEEEEccCCCCh-HHHHHHHHHHHhcCcEEEEcCCChhH
Q 002309 30 AVVNVGALFTLDSTIGRVAKIAIEEAVKDVNSNSSILHGTKLNITMQSSNCSG-FIGMVEALRFMETDIVAIIGPQCSTV 108 (938)
Q Consensus 30 ~~i~IG~i~~~~~~~g~~~~~a~~~Av~~iN~~~~il~g~~l~~~~~D~~~~~-~~a~~~a~~li~~~V~aviGp~~s~~ 108 (938)
++|+||+++|+++..|...+.|+++|+|+||+++|+|+|++|+++++|+++++ ..+...+|++++++|.+||||.+|..
T Consensus 3 ~~ikIG~~~~~s~~~G~~~~~a~~lAv~eiN~~ggil~g~~l~~~~~D~~~~~~~~~~~~~~~l~~~~V~aiiG~~~S~~ 82 (393)
T 3om0_A 3 SSLRMAAILDDQTVCGRGERLALALAREQINGIIEVPAKARVEVDIFELQRDSQYETTDTMCQILPKGVVSVLGPSSSPA 82 (393)
T ss_dssp CEEEEEEEECCCCSSCCCHHHHHHHHHHHHHHSCCSSCCCEEEEEEEECCSSCHHHHHHHHHHHGGGCCSCEECCSSCHH
T ss_pred cceeEEEEecCCCcccHHHHHHHHHHHHHHhcCcccccCcEEEEEEEecCCCchhHHHHHHHHHHhcCcEEEECCCCchh
Confidence 47999999999999999999999999999999999999999999999999976 45668889999889999999999954
Q ss_pred -HHHHHHhhccCCccEEEcccCCCCCCCCCCCce--EEecCCchHHHHHHHHHHHhcCCcEEEEEEEcCccccchHHHHH
Q 002309 109 -AHIVSYVSNELQVPLLSFGVTDPTLSSLQYPFF--VRTTQSDSYQMTAVAEMVSYYGWNAVSVIFVDNEYGRNGVSALN 185 (938)
Q Consensus 109 -~~~va~~~~~~~iP~Is~~~~~~~l~~~~~p~~--~r~~ps~~~~~~ai~~~l~~~~w~~vaii~~d~~~g~~~~~~l~ 185 (938)
+.+++++++.++||+|++++++. ....+|++ ||+.|++..|++++++++++++|++|++||+|++||....+.+
T Consensus 83 ~~~a~~~i~~~~~ip~is~~a~~~--~~~~~~~~~~fr~~p~~~~~~~~~~~~~~~~g~~~vaii~~~~~~g~~l~~~~- 159 (393)
T 3om0_A 83 SASTVSHICGEKEIPHIKVGPEET--PRLQYLRFASVSLYPSNEDVSLAVSRILKSFNYPSASLICAKAECLLRLEELV- 159 (393)
T ss_dssp HHHHHHHHHHHHTCCEEECSCCCC--C----CCSCCEESSCCHHHHHHHHHHHHHHTTSCCEEEEESSTTHHHHTHHHH-
T ss_pred HHHHHHHHHhccCCCeEeccCCcC--ccccccccceEEecCCHHHHHHHHHHHHHhCCCcEEEEEEeCchHHHHHHHHH-
Confidence 57999999999999999977641 12568988 9999999999999999999999999999999999998765555
Q ss_pred HHHhhcceEEEEEeecCCCCCCChhhHHHHHHHHhcCCceEEEEEeChhhHHHHHHHHHHcCCCCCCeEEEEeCcchhcc
Q 002309 186 DKLAERRCRISYKSGIPPESGVNTGYVMDLLVKVALMESRVIVLHVSPSLGFQVFSVAKYLGMMGNGYVWIATDWLAYML 265 (938)
Q Consensus 186 ~~l~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~lk~~~~~viv~~~~~~~~~~~l~~a~~~g~~~~~~~wi~~~~~~~~~ 265 (938)
+.+.+.|++|.... + ++ ..|+..++++|+++++|+|++++.+.++..++++|+++||..++|+|+++++.....
T Consensus 160 ~~~~~~g~~v~~~~-~-~~----~~d~~~~l~~i~~~~~~vii~~~~~~~~~~~~~~a~~~g~~~~~~~~i~~~~~~~~~ 233 (393)
T 3om0_A 160 RGFLISKETLSVRM-L-DD----SRDPTPLLKEIRDDKVSTIIIDANASISHLVLRKASELGMTSAFYKYILTTMDFPIL 233 (393)
T ss_dssp HHHHHSSSCEEEEE-C-C-----CCCSHHHHHHHHHHTCSEEEEESCHHHHHHHHHHHHHTTTTSTTCEEEECCTTGGGC
T ss_pred HhhhccCCeEEEEe-c-CC----CCCHHHHHHHHHhcCCeEEEEECCHHHHHHHHHHHHHcCcccCCeEEEEeccccccc
Confidence 55677899987654 3 33 568999999999999999999999999999999999999998899999988655443
Q ss_pred cCCCCChhhhhccccEEEEEEcCCCChhhHHHHHHHhhhcCC------CCCCCchhhHHhHHHHHHHHHHHHHHhcCCcc
Q 002309 266 DSASLPSETLESMQGVLVLRQHIPESDRKKNFLSRWKNLTGG------SLGMNSYGLYAYDSVWLLAHAIESFFNQGGKI 339 (938)
Q Consensus 266 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~f~~~~~~~~~~------~~~~~~~~~~~YDav~~~a~Al~~~~~~~~~~ 339 (938)
+. ........|++++..+.+..+.+++|.++|+++|+. ...++.+++++||||+++++|++++.+... .
T Consensus 234 ~l----~~~~~~~~~~~g~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~p~~~a~~~YDAv~~la~Al~~~~~~~~-~ 308 (393)
T 3om0_A 234 HL----DGIVEDSSNILGFSMFNTSHPFYPEFVRSLNMSWRENCEASTYPGPALSAALMFDAVHVVVSAVRELNRSQE-I 308 (393)
T ss_dssp CC----TTTCCSSCSEEEEECCCTTSTTHHHHHHHHHHHHTTTSCGGGCCSCCHHHHHHHHHHHHHHHHHHHHTTTSC-C
T ss_pred ch----hhhhccCCcEEEEEEecCCccHHHHHHHHHHHHhhhhccCCCCCCCchHHHHHHhHHHHHHHHHHHHhhccc-C
Confidence 32 122345678999998888899999999999888831 035677999999999999999999854311 1
Q ss_pred cccCCccccccCCCccccCCccccCchHHHHHHHhcCcccccccceEEcCCCCCccceEEEEEeeccceEEEEEeeCCCC
Q 002309 340 SFSNDSRLKTMEGGNLHLGAMSIFDDGMLLLGNILQSNLVGLTGPLKFNSDRSLIHAAYDIINVIGTGFRMIGYWSNYSG 419 (938)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~l~~~~f~G~tG~v~F~~~g~~~~~~~~I~~~~~~~~~~Vg~w~~~~g 419 (938)
......|....+|.++..|.++|++++|+|++|+++||++|++....|+|++++++++++||+|++..|
T Consensus 309 -----------~~~~~~c~~~~~~~~g~~l~~~l~~~~f~G~tG~i~fd~~G~~~~~~~~i~~~~~~g~~~VG~w~~~~g 377 (393)
T 3om0_A 309 -----------GVKPLACTSANIWPHGTSLMNYLRMVEYDGLTGRVEFNSKGQRTNYTLRILEKSRQGHREIGVWYSNRT 377 (393)
T ss_dssp -----------CCCCCCTTCCCCCTTHHHHHHHHTTCCEEETTEEECBCTTSCBCSCEEEEEEEETTEEEEEEEEECC--
T ss_pred -----------cCCCcCCCCCCcccCchHHHHHHHhCCCCCccceEEeCCCCcccceeEEEEEeccCCceEeeeEcCCCC
Confidence 122346777888889999999999999999999999999999888999999999999999999999999
Q ss_pred CccC
Q 002309 420 LSKE 423 (938)
Q Consensus 420 ~~~~ 423 (938)
+++.
T Consensus 378 l~~~ 381 (393)
T 3om0_A 378 LAMN 381 (393)
T ss_dssp ----
T ss_pred cccc
Confidence 8764
No 5
>3h6g_A Glutamate receptor, ionotropic kainate 2; membrane protein glycoprotein, cell junction, cell membrane, glycoprotein, ION transport; HET: NAG TLA; 2.70A {Rattus norvegicus} PDB: 3h6h_A* 3qlv_C 3qlu_C* 3qlt_A* 3olz_A*
Probab=100.00 E-value=3.6e-48 Score=437.03 Aligned_cols=369 Identities=22% Similarity=0.309 Sum_probs=320.7
Q ss_pred CeeEEEEEEeeCC-CcchhHHHHHHHHHHHHHhcCCCCCCCCEEEEEEccCC-CChHHHHHHHHHHHhcCcEEEEcCCCh
Q 002309 29 PAVVNVGALFTLD-STIGRVAKIAIEEAVKDVNSNSSILHGTKLNITMQSSN-CSGFIGMVEALRFMETDIVAIIGPQCS 106 (938)
Q Consensus 29 ~~~i~IG~i~~~~-~~~g~~~~~a~~~Av~~iN~~~~il~g~~l~~~~~D~~-~~~~~a~~~a~~li~~~V~aviGp~~s 106 (938)
+++|+||+++|++ +..|...+.|+++|+|+||+++|+|+|++|++++.|+. .|+..+...+|++++++|.+||||.+|
T Consensus 2 ~~~i~IG~l~~~sg~~~g~~~~~a~~lAv~eiN~~ggil~~~~l~~~~~~~~~~d~~~~~~~a~~l~~~~V~aiiG~~~S 81 (395)
T 3h6g_A 2 THVLRFGGIFEYVESGPMGAEELAFRFAVNTINRNRTLLPNTTLTYDTQKINLYDSFEASKKACDQLSLGVAAIFGPSHS 81 (395)
T ss_dssp CEEEEEEEEEEESSSCSCCHHHHHHHHHHHHHHHCSSSSSSEEEEEEEEEEETTCHHHHHHHHHHHHHHCCSCEECCSSH
T ss_pred CcceEEEEEecCCCcccchHHHHHHHHHHHHHhcCccccCCceEEEEEeecCCcChHHHHHHHHHhhhcCcEEEECCCCh
Confidence 6789999999997 46788999999999999999999998889999999887 589999999999999999999999999
Q ss_pred hHHHHHHHhhccCCccEEEcccCCCCCCCCCCCceEEecCCchHHHHHHHHHHHhcCCcEEEEEEEcCccccchHHHHHH
Q 002309 107 TVAHIVSYVSNELQVPLLSFGVTDPTLSSLQYPFFVRTTQSDSYQMTAVAEMVSYYGWNAVSVIFVDNEYGRNGVSALND 186 (938)
Q Consensus 107 ~~~~~va~~~~~~~iP~Is~~~~~~~l~~~~~p~~~r~~ps~~~~~~ai~~~l~~~~w~~vaii~~d~~~g~~~~~~l~~ 186 (938)
..+.+++++++.++||+|+++++++.+++ ..+|+||+.|++..++.++++++++++|++|++|| |++||....+.+++
T Consensus 82 ~~~~a~~~~~~~~~ip~is~~~~~~~l~~-~~~~~~r~~~~~~~~~~~~~~~~~~~g~~~v~ii~-d~~~g~~~~~~~~~ 159 (395)
T 3h6g_A 82 SSANAVQSICNALGVPHIQTRWKHQVSDN-KDSFYVSLYPDFSSLSRAILDLVQFFKWKTVTVVY-DDSTGLIRLQELIK 159 (395)
T ss_dssp HHHHHHHHHHHHTTCCEEECSCCCCCTTC-CCCSEEEEEECHHHHHHHHHHHHHHTTCSEEEEEE-SSTHHHHHTHHHHT
T ss_pred hHHHHHHHHHhcCCCCeEeeccCcccccc-cCceEEEecCCHHHHHHHHHHHHHHCCCeEEEEEE-EChhHHHHHHHHHH
Confidence 99999999999999999999999999876 46889999999999999999999999999999998 67899999999999
Q ss_pred HHhhcceEEEEEeecCCCCCCChhhHHHHHHHHhcCCceEEEEEeChhhHHHHHHHHHHcCCCCCCeEEEEeCcchhccc
Q 002309 187 KLAERRCRISYKSGIPPESGVNTGYVMDLLVKVALMESRVIVLHVSPSLGFQVFSVAKYLGMMGNGYVWIATDWLAYMLD 266 (938)
Q Consensus 187 ~l~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~lk~~~~~viv~~~~~~~~~~~l~~a~~~g~~~~~~~wi~~~~~~~~~~ 266 (938)
.+++.|++|+... ++.+ ..|+..++++|+.+++|+|++++.+.++..++++|+++||+.+.|+|++++......+
T Consensus 160 ~~~~~g~~v~~~~-~~~~----~~d~~~~l~~i~~~~~~vi~~~~~~~~~~~~~~qa~~~gl~~~~~~~i~~~~~~~~~~ 234 (395)
T 3h6g_A 160 APSRYNLRLKIRQ-LPAD----TKDAKPLLKEMKRGKEFHVIFDCSHEMAAGILKQALAMGMMTEYYHYIFTTLDLFALD 234 (395)
T ss_dssp GGGTSSCEEEEEE-CCSS----GGGGHHHHHHHHHTTCCEEEEESCHHHHHHHHHHHHHTTCCSTTCEEEECCTTGGGBC
T ss_pred hhhcCCceEEEEE-eCCC----chhHHHHHHHHhhcCCeEEEEECCHHHHHHHHHHHHHccccCCceEEEEecCceeEec
Confidence 9999999998865 7755 7899999999999999999999999999999999999999999999999864322222
Q ss_pred CCCCChhhhhccccEEEEEEcCCCChhhHHHHHHHhhhcCCC----------CCCCchhhHHhHHHHHHHHHHHHHHhcC
Q 002309 267 SASLPSETLESMQGVLVLRQHIPESDRKKNFLSRWKNLTGGS----------LGMNSYGLYAYDSVWLLAHAIESFFNQG 336 (938)
Q Consensus 267 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~f~~~~~~~~~~~----------~~~~~~~~~~YDav~~~a~Al~~~~~~~ 336 (938)
. ........++.++.+..+.++..++|.++|++++... ..++.+++++|||++++++|++++.+.
T Consensus 235 ~----~~~~~~g~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~p~~~~~~~~~~~~~~aa~~YDav~~~a~Al~~a~~~- 309 (395)
T 3h6g_A 235 V----EPYRYSGVNMTGFRILNTENTQVSSIIEKWSMERLQAPPKPDSGLLDGFMTTDAALMYDAVHVVSVAVQQFPQM- 309 (395)
T ss_dssp C----TTTTTSCCEEEEEECSCTTSHHHHHHHHHHHHC------CCSSCBCTTCCCHHHHHHHHHHHHHHHHHHTCTTC-
T ss_pred h----HHhccCccceEEEEEecCCcHHHHHHHHHHHhcccccCcccCCCcCCCccchhHHHHHhHHHHHHHHHHhhhcC-
Confidence 2 1111112236778888888999999999999765211 114569999999999999999986432
Q ss_pred CcccccCCccccccCCCccccCCccccCchHHHHHHHhcCcccccccceEEcC-CCCCccceEEEEEeeccceEEEEEee
Q 002309 337 GKISFSNDSRLKTMEGGNLHLGAMSIFDDGMLLLGNILQSNLVGLTGPLKFNS-DRSLIHAAYDIINVIGTGFRMIGYWS 415 (938)
Q Consensus 337 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~l~~~~f~G~tG~v~F~~-~g~~~~~~~~I~~~~~~~~~~Vg~w~ 415 (938)
......|....+|.++..|.++|++++|+|++|+++||+ +|++....|+|+++++++++.||+|+
T Consensus 310 --------------~~~~~~c~~~~~~~~~~~l~~al~~~~~~G~tG~i~fd~~~G~~~~~~~~i~~~~~~~~~~vG~w~ 375 (395)
T 3h6g_A 310 --------------TVSSLQCNRHKPWRFGTRFMSLIKEAHWEGLTGRITFNKTNGLRTDFDLDVISLKEEGLEKIGTWD 375 (395)
T ss_dssp --------------CCCCCCTTSCCCCTTHHHHHHHHHHCEEEETTEEEECCTTTSEECCCCEEEEEEETTEEEEEEEEE
T ss_pred --------------CCcCCCCCCCCcCcccHHHHHHHhcCCCcCcceeeEecCCCCeecCCeEEEEEeccCCceEEEEEc
Confidence 122346777888999999999999999999999999998 99998889999999999999999999
Q ss_pred CCCCCccC
Q 002309 416 NYSGLSKE 423 (938)
Q Consensus 416 ~~~g~~~~ 423 (938)
+..|+++.
T Consensus 376 ~~~g~~~~ 383 (395)
T 3h6g_A 376 PASGLNMT 383 (395)
T ss_dssp TTTEECCC
T ss_pred CCCCcccc
Confidence 99998754
No 6
>4f11_A Gamma-aminobutyric acid type B receptor subunit 2; venus flytrap module, G-protein coupled receptor, signaling; 2.38A {Homo sapiens} PDB: 4f12_A*
Probab=100.00 E-value=4.4e-48 Score=441.94 Aligned_cols=368 Identities=20% Similarity=0.339 Sum_probs=317.7
Q ss_pred CCCCeeEEEEEEeeCCC-----cchhHHHHHHHHHHHHHhcCCCCCCCCEEEEEEccCCCChHHHHHHHHHHHhc--CcE
Q 002309 26 SARPAVVNVGALFTLDS-----TIGRVAKIAIEEAVKDVNSNSSILHGTKLNITMQSSNCSGFIGMVEALRFMET--DIV 98 (938)
Q Consensus 26 ~~~~~~i~IG~i~~~~~-----~~g~~~~~a~~~Av~~iN~~~~il~g~~l~~~~~D~~~~~~~a~~~a~~li~~--~V~ 98 (938)
+...++|+||+++|++. ..|.....|+++|+|+||++ |+++|++|+++++|++|++..|+..+++|+.+ +|.
T Consensus 9 ~~~~~~i~IG~~~plsG~~a~~~~g~~~~~~~~lAv~~iN~~-g~l~g~~l~l~~~D~~~~~~~a~~~a~~li~~~~~v~ 87 (433)
T 4f11_A 9 PPSSPPLSIMGLMPLTKEVAKGSIGRGVLPAVELAIEQIRNE-SLLRPYFLDLRLYDTECDNAKGLKAFYDAIKYGPNHL 87 (433)
T ss_dssp --CCCEEEEEEEECCCTTSTTHHHHHHHHHHHHHHHHHHHHT-TTTTTCEEEEEEEECTTCHHHHHHHHHHHHHHSCCCS
T ss_pred cCCCCceEEEEEEEecCCCCCCccchhHHHHHHHHHHHHhcc-CCCCCCEEEEEEecCCCCHHHHHHHHHHHHhcCCceE
Confidence 34567999999999994 56888999999999999999 77789999999999999999999999999985 899
Q ss_pred EEEcCCChhHHHHHHHhhccCCccEEEcccCCCCCCC-CCCCceEEecCCchHHHHHHHHHHHhcCCcEEEEEEEcCccc
Q 002309 99 AIIGPQCSTVAHIVSYVSNELQVPLLSFGVTDPTLSS-LQYPFFVRTTQSDSYQMTAVAEMVSYYGWNAVSVIFVDNEYG 177 (938)
Q Consensus 99 aviGp~~s~~~~~va~~~~~~~iP~Is~~~~~~~l~~-~~~p~~~r~~ps~~~~~~ai~~~l~~~~w~~vaii~~d~~~g 177 (938)
+||||.+|..+.+++++++.+++|+|+++++++.+++ ..|||+||+.|++..++.++++++++++|++|++||+|++||
T Consensus 88 aviG~~~S~~~~a~~~~~~~~~ip~is~~~~~~~l~~~~~~~~~fr~~~~~~~~~~~~~~~~~~~g~~~v~ii~~~~~~g 167 (433)
T 4f11_A 88 MVFGGVCPSVTSIIAESLQGWNLVQLSFAATTPVLADKKKYPYFFRTVPSDNAVNPAILKLLKHYQWKRVGTLTQDVQRF 167 (433)
T ss_dssp EEEECCSHHHHHHHHHTHHHHTCEEEESSCCCGGGGCTTTCTTEEESSCCGGGHHHHHHHHHHHTTCCEEEEEEESSHHH
T ss_pred EEECCCcchHHHHHHHHHHhcCceEEEcccCCccccccccCCceEEecCchHHHHHHHHHHHHHcCCcEEEEEEecchhh
Confidence 9999999999999999999999999999999999998 579999999999999999999999999999999999999999
Q ss_pred cchHHHHHHHHhhcceEEEEEeecCCCCCCChhhHHHHHHHHhcCCceEEEEEeChhhHHHHHHHHHHcCCCCCCeEEEE
Q 002309 178 RNGVSALNDKLAERRCRISYKSGIPPESGVNTGYVMDLLVKVALMESRVIVLHVSPSLGFQVFSVAKYLGMMGNGYVWIA 257 (938)
Q Consensus 178 ~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~lk~~~~~viv~~~~~~~~~~~l~~a~~~g~~~~~~~wi~ 257 (938)
....+.+++.+++.|++|+....++. |+..++++|+++++|+|++++.+.++..++++|+++|+...+|+||.
T Consensus 168 ~~~~~~~~~~~~~~g~~v~~~~~~~~-------d~~~~l~~i~~~~~~vii~~~~~~~~~~~~~~a~~~g~~~~~~~~i~ 240 (433)
T 4f11_A 168 SEVRNDLTGVLYGEDIEISDTESFSN-------DPCTSVKKLKGNDVRIILGQFDQNMAAKVFCCAYEENMYGSKYQWII 240 (433)
T ss_dssp HHHHHHHHHHSSSSSCEEEEEEEESS-------CCHHHHHHHHHTTCCEEEEECCHHHHHHHHHHHHHTTCCSTTCEEEE
T ss_pred HHHHHHHHHHHHHcCceEEEEeccCc-------CHHHHHHHHhhCCCeEEEEeCcHHHHHHHHHHHHHcCCCCCCeEEEE
Confidence 99999999999999999998887763 56789999999999999999999999999999999999888899999
Q ss_pred eCcchhccc---------CCCCChhhhhccccEEEEEEcCCCC--------hhhHHHHHHHhhh-cCCCCCCCchhhHHh
Q 002309 258 TDWLAYMLD---------SASLPSETLESMQGVLVLRQHIPES--------DRKKNFLSRWKNL-TGGSLGMNSYGLYAY 319 (938)
Q Consensus 258 ~~~~~~~~~---------~~~~~~~~~~~~~g~~~~~~~~~~~--------~~~~~f~~~~~~~-~~~~~~~~~~~~~~Y 319 (938)
+++....+. ..+......+.++|++++.++.+.. +..++|.++|+++ + +..++.+++++|
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~f~~~y~~~~~--~~~~~~~a~~~Y 318 (433)
T 4f11_A 241 PGWYEPSWWEQVHTEANSSRCLRKNLLAAMEGYIGVDFEPLSSKQIKTISGKTPQQYEREYNNKRS--GVGPSKFHGYAY 318 (433)
T ss_dssp ESCSCTTTTTCC------CCSCHHHHHHHHTTCEEEEECSSCCCCCCCTTSCCHHHHHHHHHHHHT--TSCCCTTHHHHH
T ss_pred cCcchHhHhcccccCCCCCCCCHHHHHHHHhCEEEEEEeecCCCCCcccCCCCHHHHHHHHHHhcC--CCCcccchhhHH
Confidence 998433221 1223345567899999999876532 3378899999987 5 677889999999
Q ss_pred HHHHHHHHHHHHHHhcCCcccccCCccccccCCCccccC--CccccCchHHHHHHHhcCcccccccceEEcCCCCCccce
Q 002309 320 DSVWLLAHAIESFFNQGGKISFSNDSRLKTMEGGNLHLG--AMSIFDDGMLLLGNILQSNLVGLTGPLKFNSDRSLIHAA 397 (938)
Q Consensus 320 Dav~~~a~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~g~~l~~~l~~~~f~G~tG~v~F~~~g~~~~~~ 397 (938)
|||+++|+|++++..+.... +.+.+|. ....|.+++.|+++|++++|+|++|+++| ++|++. ..
T Consensus 319 DAv~~la~Al~~a~~~~~~~------------~~~~~l~~~~~~~~~~~~~l~~~l~~~~f~G~tG~v~f-~~Gd~~-~~ 384 (433)
T 4f11_A 319 DGIWVIAKTLQRAMETLHAS------------SRHQRIQDFNYTDHTLGRIILNAMNETNFFGVTGQVVF-RNGERM-GT 384 (433)
T ss_dssp HHHHHHHHHHHHHHHHHHHS------------SSCCCGGGCSSCCHHHHHHHHHHHHTCEEEETTEEEEE-ETTEEE-CE
T ss_pred HHHHHHHHHHHHHHHHHhcc------------CCCCcccccccccHHHHHHHHHHHHhcEEEccceEEEE-ecCcee-ee
Confidence 99999999999987541100 0000111 12234568999999999999999999999 899974 89
Q ss_pred EEEEEeeccceEEEEEeeCC
Q 002309 398 YDIINVIGTGFRMIGYWSNY 417 (938)
Q Consensus 398 ~~I~~~~~~~~~~Vg~w~~~ 417 (938)
|+|++++++++++||+|++.
T Consensus 385 ~~I~~~~~g~~~~VG~~~~~ 404 (433)
T 4f11_A 385 IKFTQFQDSREVKVGEYNAV 404 (433)
T ss_dssp EEEEEEETTEEEEEEEEETT
T ss_pred EEEEEEECCceEEEEEEECC
Confidence 99999999999999999864
No 7
>3hsy_A Glutamate receptor 2; ligand-gated ION channel, synapse, cell CELL membrane, endoplasmic reticulum, glycoprotein, ION TRA ionic channel; HET: NAG BMA; 1.75A {Rattus norvegicus} PDB: 3h5v_A* 3h5w_A 3o2j_A* 2wjw_A* 2wjx_A 3n6v_A
Probab=100.00 E-value=7.8e-48 Score=430.43 Aligned_cols=363 Identities=17% Similarity=0.259 Sum_probs=292.9
Q ss_pred eeEEEEEEeeCCCcchhHHHHHHHHHHHHHhcCCCCCCCCEEEEEEccCCC-ChHHHHHHHHHHHhcCcEEEEcCCChhH
Q 002309 30 AVVNVGALFTLDSTIGRVAKIAIEEAVKDVNSNSSILHGTKLNITMQSSNC-SGFIGMVEALRFMETDIVAIIGPQCSTV 108 (938)
Q Consensus 30 ~~i~IG~i~~~~~~~g~~~~~a~~~Av~~iN~~~~il~g~~l~~~~~D~~~-~~~~a~~~a~~li~~~V~aviGp~~s~~ 108 (938)
.+|+||+++|++. ...+.|+++|+|+||++ |++|+++++|+++ |+..|++++++|++++|.+||||.+|..
T Consensus 1 ~~i~IG~i~~~sg---~~~~~~~~lAv~~iN~~-----g~~l~~~~~d~~~~d~~~a~~~~~~li~~~V~aiiG~~~S~~ 72 (376)
T 3hsy_A 1 NSIQIGGLFPRGA---DQEYSAFRVGMVQFSTS-----EFRLTPHIDNLEVANSFAVTNAFCSQFSRGVYAIFGFYDKKS 72 (376)
T ss_dssp CEEEEEEEEETTC---HHHHHHHHHHHHHTCCS-----SCEEEEEEEEECTTCHHHHHHHHHHHHHTTCSEEEECCCTTT
T ss_pred CceeEEEEeCCCC---HHHHHHHHHHHHHHhcC-----CeEEEEEEeecCCCChHHHHHHHHHHHhcCcEEEECCCchhH
Confidence 3699999999986 36799999999999988 6999999999765 9999999999999999999999999999
Q ss_pred HHHHHHhhccCCccEEEcccCCCCCCCCCCCceEEecCCchHHHHHHHHHHHhcCCcEEEEEEEcCccccchHHHHHHHH
Q 002309 109 AHIVSYVSNELQVPLLSFGVTDPTLSSLQYPFFVRTTQSDSYQMTAVAEMVSYYGWNAVSVIFVDNEYGRNGVSALNDKL 188 (938)
Q Consensus 109 ~~~va~~~~~~~iP~Is~~~~~~~l~~~~~p~~~r~~ps~~~~~~ai~~~l~~~~w~~vaii~~d~~~g~~~~~~l~~~l 188 (938)
+.+++++++.++||+|++++. . ...++|+||+.|+ |+.++++++++++|++|++|| |++||....+.+.+.+
T Consensus 73 ~~av~~~~~~~~ip~is~~~~--~--~~~~~~~~~~~p~---~~~a~~~~~~~~gw~~vaii~-d~~~g~~~~~~~~~~~ 144 (376)
T 3hsy_A 73 VNTITSFCGTLHVSFITPSFP--T--DGTHPFVIQMRPD---LKGALLSLIEYYQWDKFAYLY-DSDRGLSTLQAVLDSA 144 (376)
T ss_dssp HHHHHHHHHHHTCEEEECSCC--C--CSCCTTEEECSCC---CHHHHHHHHHHTTCCEEEEEE-CSTTCSHHHHHHHHHH
T ss_pred HHHHHHHhccCcCceeecCCC--C--cccCCceEEeCcc---HHHHHHHHHHhcCCCEEEEEE-eCchhHHHHHHHHHHh
Confidence 999999999999999998662 2 3356889999886 899999999999999999999 8999999999999999
Q ss_pred hhcceEEEEEeecCCCCCCChhhHHHHHHHHhcCCceEEEEEeChhhHHHHHHHHHHcCCCCCCeEEEEeCcchhcccCC
Q 002309 189 AERRCRISYKSGIPPESGVNTGYVMDLLVKVALMESRVIVLHVSPSLGFQVFSVAKYLGMMGNGYVWIATDWLAYMLDSA 268 (938)
Q Consensus 189 ~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~lk~~~~~viv~~~~~~~~~~~l~~a~~~g~~~~~~~wi~~~~~~~~~~~~ 268 (938)
++.|++|+....++........|+..+|++|+.+++|+|++++.+..+..++++++++||+.++|+||++++.....+.
T Consensus 145 ~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~i~~~~~~vii~~~~~~~~~~~~~qa~~~g~~~~~~~~i~~~~~~~~~~~- 223 (376)
T 3hsy_A 145 AEKKWQVTAINVGNINNDKKDETYRSLFQDLELKKERRVILDCERDKVNDIVDQVITIGKHVKGYHYIIANLGFTDGDL- 223 (376)
T ss_dssp HHHTCEEEEEECTTCC--------------------CEEEEESCHHHHHHHHHHHHHHTSSGGGCEEEECSSBTTSTTG-
T ss_pred hhcCCeEEEEEeccccccccchhHHHHHHHHhhCCCeEEEEECCHHHHHHHHHHHHHcccCCCCcEEEEcCCCccccch-
Confidence 9999999987765432001367899999999999999999999999999999999999999889999998753222111
Q ss_pred CCChhhhhccccEEEEEEcCCCChhhHHHHHHHhhhcCCC------CCCCchhhHHhHHHHHHHHHHHHHHhcCCccccc
Q 002309 269 SLPSETLESMQGVLVLRQHIPESDRKKNFLSRWKNLTGGS------LGMNSYGLYAYDSVWLLAHAIESFFNQGGKISFS 342 (938)
Q Consensus 269 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~f~~~~~~~~~~~------~~~~~~~~~~YDav~~~a~Al~~~~~~~~~~~~~ 342 (938)
.+......+++++.+..++.+..++|.++|+++++.. ..++.+++++||||+++|+|++++.+++..+..
T Consensus 224 ---~~~~~~~~~~~~~~~~~~~~~~~~~F~~~~~~~~~~~~~~~~~~~~~~~aa~~YDav~~la~Ai~~~~~~~~~~~~- 299 (376)
T 3hsy_A 224 ---LKIQFGGANVSGFQIVDYDDSLVSKFIERWSTLEEKEYPGAHTATIKYTSALTYDAVQVMTEAFRNLRKQRIEISR- 299 (376)
T ss_dssp ---GGSCCTTCEEEEEESCCTTSHHHHHHHHHHTTSCTTTSTTCSCSSCCHHHHHHHHHHHHHHHHHHHHHHTTCCCSC-
T ss_pred ---HHhhcCCcCceEEEEecCCchHHHHHHHHHHhccccccCCCCCcccchhHHHHHHHHHHHHHHHHHHHhcCCcccc-
Confidence 1222233458888888888999999999999887311 147889999999999999999999876543321
Q ss_pred CCccccccCCCcccc--CCccccCchHHHHHHHhcCcccccccceEEcCCCCCccceEEEEEeeccceEEEEEeeCCCCC
Q 002309 343 NDSRLKTMEGGNLHL--GAMSIFDDGMLLLGNILQSNLVGLTGPLKFNSDRSLIHAAYDIINVIGTGFRMIGYWSNYSGL 420 (938)
Q Consensus 343 ~~~~~~~~~~~~~~~--~~~~~~~~g~~l~~~l~~~~f~G~tG~v~F~~~g~~~~~~~~I~~~~~~~~~~Vg~w~~~~g~ 420 (938)
.+....| +...+|.+|.+|+++|++++|+|++|+++||++|++....|+|++++++++++||+|++..||
T Consensus 300 --------~~~~~~~~~~~~~~~~~g~~l~~~l~~~~f~G~tG~i~fd~~G~~~~~~~~i~~~~~~g~~~VG~w~~~~g~ 371 (376)
T 3hsy_A 300 --------RGNAGDCLANPAVPWGQGVEIERALKQVQVEGLSGNIKFDQNGKRINYTINIMELKTNGPRKIGYWSEVDKM 371 (376)
T ss_dssp --------CCCCCCTTCSSCCCCHHHHHHHHHHHHCCEEETTEEECBCTTSBBCSCEEEEEEEETTEEEEEEEEETTTEE
T ss_pred --------CCCCCccCCCCCCCcCCcHHHHHHHHhcCcCCCccceeECCCCCCccceEEEEEecCCCceEEEEEcCCCCc
Confidence 1112245 556778889999999999999999999999999999899999999999999999999999887
Q ss_pred c
Q 002309 421 S 421 (938)
Q Consensus 421 ~ 421 (938)
+
T Consensus 372 ~ 372 (376)
T 3hsy_A 372 V 372 (376)
T ss_dssp E
T ss_pred e
Confidence 5
No 8
>3saj_A Glutamate receptor 1; rossman fold, ION channel, membrane, transport protein; HET: NAG BMA MAN; 2.50A {Rattus norvegicus}
Probab=100.00 E-value=3.8e-47 Score=426.37 Aligned_cols=366 Identities=18% Similarity=0.228 Sum_probs=314.1
Q ss_pred CCCCeeEEEEEEeeCCCcchhHHHHHHHHHHHHHhcCCCCCCCCEEEEEEccCCC-ChHHHHHHHHHHHhcCcEEEEcCC
Q 002309 26 SARPAVVNVGALFTLDSTIGRVAKIAIEEAVKDVNSNSSILHGTKLNITMQSSNC-SGFIGMVEALRFMETDIVAIIGPQ 104 (938)
Q Consensus 26 ~~~~~~i~IG~i~~~~~~~g~~~~~a~~~Av~~iN~~~~il~g~~l~~~~~D~~~-~~~~a~~~a~~li~~~V~aviGp~ 104 (938)
+..+++|+||+++|++.. ..+.|+++|+|+||+++ +|+++++|+++ |+..|++++++|++++|.+||||.
T Consensus 5 g~~~~~ikIG~~~~~sg~---~~~~a~~lAv~~iN~~g------~l~~~~~D~~~~d~~~a~~~~~~l~~~~V~aiiG~~ 75 (384)
T 3saj_A 5 GAMPNNIQIGGLFPNQQS---QEHAAFRFALSQLTEPP------KLLPQIDIVNISDSFEMTYRFCSQFSKGVYAIFGFY 75 (384)
T ss_dssp CCCCSEEEEEEEESCSSS---HHHHHHHHHHTTCCSSS------EEEEEEEECCTTCHHHHHHHHHHHHHTTCSCEEECC
T ss_pred CCCCcceeEEEEecCCCH---HHHHHHHHHHHHHhcCC------ccceeeEecccCchhhHHHHHHHHHhcCeEEEECCC
Confidence 346789999999999865 78999999999999875 99999999987 999999999999999999999999
Q ss_pred ChhHHHHHHHhhccCCccEEEcccCCCCCCCCCCCceEEecCCchHHHHHHHHHHHhcCCcEEEEEEEcCccccchHHHH
Q 002309 105 CSTVAHIVSYVSNELQVPLLSFGVTDPTLSSLQYPFFVRTTQSDSYQMTAVAEMVSYYGWNAVSVIFVDNEYGRNGVSAL 184 (938)
Q Consensus 105 ~s~~~~~va~~~~~~~iP~Is~~~~~~~l~~~~~p~~~r~~ps~~~~~~ai~~~l~~~~w~~vaii~~d~~~g~~~~~~l 184 (938)
+|..+.+++++++.++||+|+++ +|.++ ..+|+||+.|+ ++.++++++++++|++|++|| |++||....+.+
T Consensus 76 ~S~~~~a~~~~~~~~~iP~is~~--~~~~~--~~~~~~~~~p~---~~~a~~~~~~~~g~~~v~ii~-d~~~g~~~~~~~ 147 (384)
T 3saj_A 76 ERRTVNMLTSFCGALHVCFITPS--FPVDT--SNQFVLQLRPE---LQEALISIIDHYKWQTFVYIY-DADRGLSVLQRV 147 (384)
T ss_dssp CHHHHHHHHHHHHHHTCCEEECS--CCCSS--CCTTEEECSCC---CHHHHHHHHHHTTCCEEEEEE-CSTTCSHHHHHH
T ss_pred CHHHHHHHHHHhccCCCCeEecc--ccCcC--ccCceEEeccc---HHHHHHHHHHHCCCcEEEEEE-eCchhHHHHHHH
Confidence 99999999999999999999984 44443 45678888887 899999999999999999999 778999999999
Q ss_pred HHHHhhcceEEEEEeecCCCCCCChhhHHHHHHHHhcCCceEEEEEeChhhHHHHHHHHHHcCCCCCCeEEEEeCcchhc
Q 002309 185 NDKLAERRCRISYKSGIPPESGVNTGYVMDLLVKVALMESRVIVLHVSPSLGFQVFSVAKYLGMMGNGYVWIATDWLAYM 264 (938)
Q Consensus 185 ~~~l~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~lk~~~~~viv~~~~~~~~~~~l~~a~~~g~~~~~~~wi~~~~~~~~ 264 (938)
.+.+++.|+||+....++.+ ..|+..++++|+.+++|+|++++.+.++..++++|+++||+.++|+|++++.....
T Consensus 148 ~~~~~~~g~~v~~~~~~~~~----~~d~~~~l~~ik~~~~~vii~~~~~~~~~~~~~qa~~~g~~~~~~~~i~~~~~~~~ 223 (384)
T 3saj_A 148 LDTAAEKNWQVTAVNILTTT----EEGYRMLFQDLEKKKERLVVVDCESERLNAILGQIVKLEKNGIGYHYILANLGFMD 223 (384)
T ss_dssp HHHHHHHTCEEEEEEGGGCC----HHHHHHTTTTCCSCSEEEEEEECCGGGHHHHHHHHHHTCCTTCEEEEEESSSCGGG
T ss_pred HHHhhhcCceEEEEEeccCC----chhHHHHHHHHhccCCcEEEEEcCHHHHHHHHHHHHHcCCCCCCcEEEEECCCccc
Confidence 99999999999988755544 78999999999999999999999999999999999999999989999999754332
Q ss_pred ccCCCCChhhhhccccEEEEEEcCCCChhhHHHHHHHhhhcCC------CCCCCchhhHHhHHHHHHHHHHHHHHhcCCc
Q 002309 265 LDSASLPSETLESMQGVLVLRQHIPESDRKKNFLSRWKNLTGG------SLGMNSYGLYAYDSVWLLAHAIESFFNQGGK 338 (938)
Q Consensus 265 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~f~~~~~~~~~~------~~~~~~~~~~~YDav~~~a~Al~~~~~~~~~ 338 (938)
.+. ....+...|++++.++.+.++..++|.++|+++++. ...++.+++++||||+++++|++++.+.+..
T Consensus 224 ~~~----~~~~~~~~~v~~~~~~~~~~~~~~~F~~~~~~~~~~~~p~~~~~~~~~~aa~~YDav~~~a~Al~~~~~~~~~ 299 (384)
T 3saj_A 224 IDL----NKFKESGANVTGFQLVNYTDTIPARIMQQWRTSDSRDHTRVDWKRPKYTSALTYDGVKVMAEAFQSLRRQRID 299 (384)
T ss_dssp SCH----HHHHHTTCCEEEEECCCTTSHHHHHHHHHHHHHHHHC------CCCCHHHHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred ccH----HHhhCCCcceEEEEeecCCChHHHHHHHHHHhcCccccCCCCCCccchhHHHHHHHHHHHHHHHHHHHhhccc
Confidence 221 233455678999999999999999999999988731 1135678999999999999999999876544
Q ss_pred ccccCCccccccCCCccccCCc--cccCchHHHHHHHhcCcccccccceEEcCCCCCccceEEEEEeeccceEEEEEeeC
Q 002309 339 ISFSNDSRLKTMEGGNLHLGAM--SIFDDGMLLLGNILQSNLVGLTGPLKFNSDRSLIHAAYDIINVIGTGFRMIGYWSN 416 (938)
Q Consensus 339 ~~~~~~~~~~~~~~~~~~~~~~--~~~~~g~~l~~~l~~~~f~G~tG~v~F~~~g~~~~~~~~I~~~~~~~~~~Vg~w~~ 416 (938)
+... +....|... .+|.+|..|+++|++++|+|++|+++||++|++....|+|++++++++++||+|++
T Consensus 300 ~~~~---------~~~~~c~~~~~~~~~~g~~l~~~l~~~~f~G~tG~i~fd~~G~~~~~~~~i~~~~~~g~~~VG~W~~ 370 (384)
T 3saj_A 300 ISRR---------GNAGDCLANPAVPWGQGIDIQRALQQVRFEGLTGNVQFNEKGRRTNYTLHVIEMKHDGIRKIGYWNE 370 (384)
T ss_dssp CCCC---------CSCCCSCCBSCCCCTTHHHHHHHHHSCCEEETTEEECBCTTSBBCSCCEEEEEEETTEEEEEEEEET
T ss_pred eecC---------CCCCCCCCCCCCCcCCcHHHHHHHHhCcCcccceeeEeCCCCCcccceEEEEEeccCCcceeEEEcC
Confidence 3211 112245443 56788999999999999999999999999999988999999999999999999999
Q ss_pred CCCCccCCC
Q 002309 417 YSGLSKEPP 425 (938)
Q Consensus 417 ~~g~~~~~~ 425 (938)
..|+++.++
T Consensus 371 ~~gl~~~~~ 379 (384)
T 3saj_A 371 DDKFVPAAL 379 (384)
T ss_dssp TTEEEECCC
T ss_pred CCCccccCc
Confidence 988876544
No 9
>1jdp_A NPR-C, atrial natriuretic peptide clearance receptor; hormone-receptor complex, natriuretic peptide receptor, ALLO activation, signaling protein; HET: NDG NAG; 2.00A {Homo sapiens} SCOP: c.93.1.1 PDB: 1jdn_A* 1yk0_A* 1yk1_A*
Probab=100.00 E-value=2.9e-46 Score=427.82 Aligned_cols=361 Identities=16% Similarity=0.242 Sum_probs=300.8
Q ss_pred CCeeEEEEEEeeCCC---cchhHHHHHHHHHHHHHhcCCC----CCCCCEEEEEEccCCCChHHHHHHHHHHH----hcC
Q 002309 28 RPAVVNVGALFTLDS---TIGRVAKIAIEEAVKDVNSNSS----ILHGTKLNITMQSSNCSGFIGMVEALRFM----ETD 96 (938)
Q Consensus 28 ~~~~i~IG~i~~~~~---~~g~~~~~a~~~Av~~iN~~~~----il~g~~l~~~~~D~~~~~~~a~~~a~~li----~~~ 96 (938)
.+++|+||+++|++. ..|.....|+++|+|+||++++ +|+|++|+++++|++|++. |+..+.+++ +++
T Consensus 6 ~~~~i~IG~~~p~sg~~~~~g~~~~~a~~~Av~eiN~~~~~~~~ll~g~~l~~~~~D~~~~~~-a~~~~~~~~~~~~~~~ 84 (441)
T 1jdp_A 6 PPQKIEVLVLLPQDDSYLFSLTRVRPAIEYALRSVEGNGTGRRLLPPGTRFQVAYEDSDCGNR-ALFSLVDRVAAARGAK 84 (441)
T ss_dssp CCCEEEEEEEECSSTTSTTCHHHHHHHHHHHHHHHCC-----CCSCTTCEEEEEEEECTTSTH-HHHHHHHHHHHTTTCC
T ss_pred CCCceEEEEEcCCCCCcccchhhhHHHHHHHHHHHHhCCCcccccCCCcEEEEEEecCCCchh-HHHHHHHHHHhhccCC
Confidence 457899999999984 3456788999999999999998 8899999999999999998 776666554 238
Q ss_pred cEEEEcCCChhHHHHHHHhhccCCccEEEcccCCCCCCCC--CCCceEEecCCchHHHHHHHHHHHhcCCcEEEEEEEcC
Q 002309 97 IVAIIGPQCSTVAHIVSYVSNELQVPLLSFGVTDPTLSSL--QYPFFVRTTQSDSYQMTAVAEMVSYYGWNAVSVIFVDN 174 (938)
Q Consensus 97 V~aviGp~~s~~~~~va~~~~~~~iP~Is~~~~~~~l~~~--~~p~~~r~~ps~~~~~~ai~~~l~~~~w~~vaii~~d~ 174 (938)
|.+||||.+|..+.+++++++.+++|+|+++++++.++++ +|||+||+.|++..++.++++++++|+|++|++||+|+
T Consensus 85 v~aiiG~~~S~~~~~v~~~~~~~~ip~is~~~~~~~ls~~~~~~~~~fr~~p~~~~~~~a~~~~~~~~~w~~v~ii~~d~ 164 (441)
T 1jdp_A 85 PDLILGPVCEYAAAPVARLASHWDLPMLSAGALAAGFQHKDSEYSHLTRVAPAYAKMGEMMLALFRHHHWSRAALVYSDD 164 (441)
T ss_dssp CSEEECCCSHHHHHHHHHHHHHHTCCEEESCCCSGGGGCTTTTTTTEEECSCCHHHHHHHHHHHHHHHTCCEEEEEEECC
T ss_pred ceEEECCCchhhHHHHHHHHhhcCCcEEcCCCCchhhccccccCCceEEecCcHHHHHHHHHHHHHhcCCcEEEEEEEcC
Confidence 9999999999999999999999999999999999999984 79999999999999999999999999999999999999
Q ss_pred ccccc---hHHHHHHHHhhcceEEEEEeecCCCCCCChhhHHHHHHHHhcCCceEEEEEeChhhHHHHHHHHHHcCCCCC
Q 002309 175 EYGRN---GVSALNDKLAERRCRISYKSGIPPESGVNTGYVMDLLVKVALMESRVIVLHVSPSLGFQVFSVAKYLGMMGN 251 (938)
Q Consensus 175 ~~g~~---~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~lk~~~~~viv~~~~~~~~~~~l~~a~~~g~~~~ 251 (938)
+||+. ..+.+++.+++.|+||+....++.+ ..++..++++|+ +++|+|++++...++..++++++++|+..+
T Consensus 165 ~~g~~~~~~~~~~~~~~~~~g~~v~~~~~~~~~----~~d~~~~l~~i~-~~~~vii~~~~~~~~~~~~~~~~~~gl~~~ 239 (441)
T 1jdp_A 165 KLERNCYFTLEGVHEVFQEEGLHTSIYSFDETK----DLDLEDIVRNIQ-ASERVVIMCASSDTIRSIMLVAHRHGMTSG 239 (441)
T ss_dssp SSSCHHHHHHHHHHHHHHHHTCEEEEEEECTTS----CCCHHHHHHHHH-HHCSEEEEESCHHHHHHHHHHHHHTTCTTT
T ss_pred CcccchHHHHHHHHHHHHhcCcEEEEEEecCCc----ccCHHHHHHHhh-cCCcEEEEecCHHHHHHHHHHHHHcCCCCC
Confidence 99999 9999999999999999987766544 457899999999 899999999999999999999999999888
Q ss_pred CeEEEEeCcchh------cccC-CCCChhhhhccccEEEEEEcCCCChhhHHHHHHHhhh-----cCCCCCCCchhhHHh
Q 002309 252 GYVWIATDWLAY------MLDS-ASLPSETLESMQGVLVLRQHIPESDRKKNFLSRWKNL-----TGGSLGMNSYGLYAY 319 (938)
Q Consensus 252 ~~~wi~~~~~~~------~~~~-~~~~~~~~~~~~g~~~~~~~~~~~~~~~~f~~~~~~~-----~~~~~~~~~~~~~~Y 319 (938)
.|+||.+++... .+.. ............++.++..+.+..|.+++|.++|+++ |+.+..++.+++++|
T Consensus 240 ~~v~i~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~g~~~~~~~~p~~~~F~~~~~~~~~~~~~~~~~~~~~~~~~~Y 319 (441)
T 1jdp_A 240 DYAFFNIELFNSSSYGDGSWKRGDKHDFEAKQAYSSLQTVTLLRTVKPEFEKFSMEVKSSVEKQGLNMEDYVNMFVEGFH 319 (441)
T ss_dssp TCEEEEECSSCCCSTTTCTTCCSSTTHHHHHHHGGGEEEEEECCCCCHHHHHHHHHHHHHHHTTTCCCCSSCCHHHHHHH
T ss_pred CEEEEEEeccccccccCCCCccCCcccHHHHHHHHhheEEeecCCCCchHHHHHHHHHHHHhhCCCCccchhhhHHHHHH
Confidence 899999884221 1111 0011111134556667777778889999999999876 411113566889999
Q ss_pred HHHHHHHHHHHHHHhcCCcccccCCccccccCCCccccCCccccCchHHHHHHHhcCcccccccceEEcCCCCCccceEE
Q 002309 320 DSVWLLAHAIESFFNQGGKISFSNDSRLKTMEGGNLHLGAMSIFDDGMLLLGNILQSNLVGLTGPLKFNSDRSLIHAAYD 399 (938)
Q Consensus 320 Dav~~~a~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~l~~~~f~G~tG~v~F~~~g~~~~~~~~ 399 (938)
|||+++|+|++++..++.. +.++++|+++|++++|.|++|++.||++|++ ...|+
T Consensus 320 dAv~~~A~Al~~~~~~~~~------------------------~~~~~~l~~~l~~~~f~g~~G~v~fd~~Gd~-~~~~~ 374 (441)
T 1jdp_A 320 DAILLYVLALHEVLRAGYS------------------------KKDGGKIIQQTWNRTFEGIAGQVSIDANGDR-YGDFS 374 (441)
T ss_dssp HHHHHHHHHHHHHHHTTCC------------------------TTCHHHHHHHHSSEEEEETTEEEEECTTSBB-CCEEE
T ss_pred HHHHHHHHHHHHHHHhCCC------------------------CCCHHHHHHHHhCCeeECCccceEECCCCCc-cccEE
Confidence 9999999999998654210 1258899999999999999999999999996 48899
Q ss_pred EEEee---ccceEEEEEeeCCCC
Q 002309 400 IINVI---GTGFRMIGYWSNYSG 419 (938)
Q Consensus 400 I~~~~---~~~~~~Vg~w~~~~g 419 (938)
|++++ ++.+++||.|++..+
T Consensus 375 I~~~~~~~~g~~~~VG~~~~~~~ 397 (441)
T 1jdp_A 375 VIAMTDVEAGTQEVIGDYFGKEG 397 (441)
T ss_dssp EEEEEETTTTEEEEEEEEETTTT
T ss_pred EEecccCCCCceEEEEEEcCCCC
Confidence 99996 356999999998764
No 10
>3sm9_A Mglur3, metabotropic glutamate receptor 3; structural genomics, structural genomics consortium, SGC, CE membrane, G-protein coupled receptor; HET: Z99; 2.26A {Homo sapiens}
Probab=100.00 E-value=4.1e-46 Score=427.76 Aligned_cols=367 Identities=20% Similarity=0.337 Sum_probs=307.3
Q ss_pred CCCCeeEEEEEEeeCC------------C-cchhHHHHHHHHHHHHHhcCCCCCCCCEEEEEEccCCCChHHHHHHHHHH
Q 002309 26 SARPAVVNVGALFTLD------------S-TIGRVAKIAIEEAVKDVNSNSSILHGTKLNITMQSSNCSGFIGMVEALRF 92 (938)
Q Consensus 26 ~~~~~~i~IG~i~~~~------------~-~~g~~~~~a~~~Av~~iN~~~~il~g~~l~~~~~D~~~~~~~a~~~a~~l 92 (938)
...+++|.||++||++ . ..|.+...|+++|||+||+++++|||++|+++++|+|+++..|++++.+|
T Consensus 8 ~~~~GDi~iGglf~l~~~~~~~~~C~~~~~~~g~~~~~a~~~AieeIN~~~~lLpg~~L~~~i~D~~~~~~~a~~~~~~l 87 (479)
T 3sm9_A 8 IKIEGDLVLGGLFPINEKGTGTEECGRINEDRGIQRLEAMLFAIDEINKDDYLLPGVKLGVHILDTCSRDTYALEQSLEF 87 (479)
T ss_dssp EEECCSEEEEEEECCEEECC-CCSEEEECTTTTHHHHHHHHHHHHHHHHCSSSSTTCCEEEEEEECTTCHHHHHHHHHHH
T ss_pred cccCCCEEEEEEEEeEECCCCCCCCcccchhhhHHHHHHHHHHHHHHhCCCccCCCCeEeEEEEecCCChHHHHHHHHHH
Confidence 3467899999999996 1 15788899999999999999999999999999999999999999999999
Q ss_pred Hhc-------------------------CcEEEEcCCChhHHHHHHHhhccCCccEEEcccCCCCCCC-CCCCceEEecC
Q 002309 93 MET-------------------------DIVAIIGPQCSTVAHIVSYVSNELQVPLLSFGVTDPTLSS-LQYPFFVRTTQ 146 (938)
Q Consensus 93 i~~-------------------------~V~aviGp~~s~~~~~va~~~~~~~iP~Is~~~~~~~l~~-~~~p~~~r~~p 146 (938)
+++ +|.|||||.+|..+.+++++++.+++|+|++++++|.|++ .+|||+||+.|
T Consensus 88 l~~~~~~~~~pny~C~~~~~~~~~~~~~~v~aviG~~~S~~s~ava~i~~~~~iP~Is~~a~~~~lsd~~~~p~~fr~~p 167 (479)
T 3sm9_A 88 VRASLTKVDEAEYMCPDGSYAIQENIPLLIAGVIGGSYSSVSIQVANLLRLFQIPQISYASTSAKLSDKSRYDYFARTVP 167 (479)
T ss_dssp HHTCC-----------------------CEEEEECCSSHHHHHHHHHHHGGGTCCEEESSCCCGGGGCTTTTTTEEESSC
T ss_pred HhCCCccCCCCCCccCCCCccccccCCCceEEEECCCCcHHHHHHHHHHhcCCccEECCCcCCccccCcccCCCeEEeCC
Confidence 974 5999999999999999999999999999999999999998 57999999999
Q ss_pred CchHHHHHHHHHHHhcCCcEEEEEEEcCccccchHHHHHHHHhhcceEEEEEeecCCCCCCChhhHHHHH-HHHhcCCce
Q 002309 147 SDSYQMTAVAEMVSYYGWNAVSVIFVDNEYGRNGVSALNDKLAERRCRISYKSGIPPESGVNTGYVMDLL-VKVALMESR 225 (938)
Q Consensus 147 s~~~~~~ai~~~l~~~~w~~vaii~~d~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~d~~~~l-~~lk~~~~~ 225 (938)
+|..++.++++++++|||++|++|++|++||+...+.+++++++.|+||++.+.++.. ....++..++ +.+++++++
T Consensus 168 sd~~~~~a~~~ll~~fgw~~V~ii~~dd~~G~~~~~~~~~~~~~~Gi~v~~~~~i~~~--~~~~d~~~~l~~~i~~s~a~ 245 (479)
T 3sm9_A 168 PDFYQAKAMAEILRFFNWTYVSTVASEGDYGETGIEAFEQEARLRNISIATAEKVGRS--NIRKSYDSVIRELLQKPNAR 245 (479)
T ss_dssp CTHHHHHHHHHHHHHTTCCEEEEEEESSHHHHHHHHHHHHHHHTTTCEEEEEEEECC----CHHHHHHHHHHHHTCTTCC
T ss_pred cHHHHHHHHHHHHHHCCCeEEEEEEecchhhHHHHHHHHHHHHHCCceEEEEEEcCCC--CChHHHHHHHHHHHhcCCCe
Confidence 9999999999999999999999999999999999999999999999999999888865 3478899999 678889999
Q ss_pred EEEEEeChhhHHHHHHHHHHcCCCCCCeEEEEeCcchhcccCCCCChhhhhccccEEEEEEcCCCChhhHHHHHH-----
Q 002309 226 VIVLHVSPSLGFQVFSVAKYLGMMGNGYVWIATDWLAYMLDSASLPSETLESMQGVLVLRQHIPESDRKKNFLSR----- 300 (938)
Q Consensus 226 viv~~~~~~~~~~~l~~a~~~g~~~~~~~wi~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~f~~~----- 300 (938)
|||+++...++..++++++++|+. ++||.++.|....... ......+.|++++.++..+.+.+++|++.
T Consensus 246 vIi~~~~~~~~~~l~~~~~~~g~~---~~wI~s~~w~~~~~~~---~~~~~~~~G~l~~~~~~~~ipgf~~fl~~~~p~~ 319 (479)
T 3sm9_A 246 VVVLFMRSDDSRELIAAASRANAS---FTWVASDGWGAQESII---KGSEHVAYGAITLELASQPVRQFDRYFQSLNPYN 319 (479)
T ss_dssp EEEEECCHHHHHHHHHHHHHTTCC---CEEEECTTTTTCHHHH---TTCTTTTTTCEEEEECCCCCHHHHHHHHTCCTTT
T ss_pred EEEEEcChHHHHHHHHHHHHhCCE---EEEEEechhhcCcccc---ccccccCceEEEEEeccCCCcchhhHhhccCcCc
Confidence 999999999999999999999985 8999999886532110 11225679999999999999998888754
Q ss_pred ----------HhhhcC---CC------------------CCCCchhhHHhHHHHHHHHHHHHHHhcCCcccccCCccccc
Q 002309 301 ----------WKNLTG---GS------------------LGMNSYGLYAYDSVWLLAHAIESFFNQGGKISFSNDSRLKT 349 (938)
Q Consensus 301 ----------~~~~~~---~~------------------~~~~~~~~~~YDav~~~a~Al~~~~~~~~~~~~~~~~~~~~ 349 (938)
|+..|. .. .........+||||+++|+||++++.+....
T Consensus 320 ~p~d~~~~~~w~~~f~C~~~~~~~~~~~C~~~~~l~~~~~~~~~~~~~vy~AVyavA~ALh~m~~~~~~~---------- 389 (479)
T 3sm9_A 320 NHRNPWFRDFWEQKFQCSLQNKRNHRRVCDKHLAIDSSNYEQESKIMFVVNAVYAMAHALHKMQRTLCPN---------- 389 (479)
T ss_dssp CTTCTTHHHHHHHHHTCBCCC---CSCBCCTTCCCCTTTCCCCTTHHHHHHHHHHHHHHHHHHHHHHSTT----------
T ss_pred CCCCHHHHHHHHHHcCCCCCCCcccccCCCCccccccCccccccchhhHHHHHHHHHHHHHHHHHhhcCC----------
Confidence 444442 00 0111334689999999999999997631110
Q ss_pred cCCCccccCCccccCchHHHH-HHHhcCccccc------cc-ceEEcCCCCCccceEEEEEeec----cceEEEEEee
Q 002309 350 MEGGNLHLGAMSIFDDGMLLL-GNILQSNLVGL------TG-PLKFNSDRSLIHAAYDIINVIG----TGFRMIGYWS 415 (938)
Q Consensus 350 ~~~~~~~~~~~~~~~~g~~l~-~~l~~~~f~G~------tG-~v~F~~~g~~~~~~~~I~~~~~----~~~~~Vg~w~ 415 (938)
....|.....+ ++++|+ ++|++++|++. +| .+.||++|++ ...|+|+|++. ..+++||.|+
T Consensus 390 ---~~~~c~~~~~~-~~~qL~~~~Lk~v~F~~~~~~~~~~g~~v~fd~~G~~-~~~YdI~n~~~~~~~~~~~~VG~~~ 462 (479)
T 3sm9_A 390 ---TTKLCDAMKIL-DGKKLYKDYLLKINFTAPFNPNKDADSIVKFDTFGDG-MGRYNVFNFQNVGGKYSYLKVGHWA 462 (479)
T ss_dssp ---CSSCCHHHHSC-CHHHHHHHTGGGCCEECTTC-----CCEECCCTTCBC-CCCEEEEEEEESSSCEEEEEEEEES
T ss_pred ---CCcCCCCCCCc-ChHHHHHHHhcceeeccccCccccCCCeEEECCCCCc-ccceEEEEEEECCCcEEEEEEEEEe
Confidence 01123333333 488999 99999999998 55 6999999995 78999999973 2368999997
No 11
>2e4u_A Metabotropic glutamate receptor 3; G-protein-coupled receptor, neuron, central nerve system, SI protein; HET: NAG GLU; 2.35A {Rattus norvegicus} PDB: 2e4v_A* 2e4w_A* 2e4x_A* 2e4y_A*
Probab=100.00 E-value=1.5e-45 Score=432.75 Aligned_cols=388 Identities=21% Similarity=0.345 Sum_probs=319.4
Q ss_pred CCCeeEEEEEEeeCCC-------------cchhHHHHHHHHHHHHHhcCCCCCCCCEEEEEEccCCCChHHHHHHHHHHH
Q 002309 27 ARPAVVNVGALFTLDS-------------TIGRVAKIAIEEAVKDVNSNSSILHGTKLNITMQSSNCSGFIGMVEALRFM 93 (938)
Q Consensus 27 ~~~~~i~IG~i~~~~~-------------~~g~~~~~a~~~Av~~iN~~~~il~g~~l~~~~~D~~~~~~~a~~~a~~li 93 (938)
..+++|+||+++|++. ..|.+...|+++|+|+||+++++|||++|+++++|+++++..|++.+.+++
T Consensus 10 ~~~g~i~IG~l~pl~g~~~~~~~C~~~~~~~g~~~~~a~~~AieeIN~~~~llpg~~L~~~i~D~~~~~~~a~~~a~~~l 89 (555)
T 2e4u_A 10 KIEGDLVLGGLFPINEKGTGTEECGRINEDRGIQRLEAMLFAIDEINKDNYLLPGVKLGVHILDTCSRDTYALEQSLEFV 89 (555)
T ss_dssp EECCSEEEEEEECCEEECCTTCSEEEECTTTTHHHHHHHHHHHHHHHHCTTSSTTCCEEEEEEECTTCHHHHHHHHHHHH
T ss_pred ecCCCEEEEEEEEeeECCCCCCccccccchhhhHHHHHHHHHHHHHhCCCCCCCCCeEEEEEEECCCChHHHHHHHHHHH
Confidence 3567999999999973 357788999999999999999999999999999999999999999998887
Q ss_pred h-------------------------cCcEEEEcCCChhHHHHHHHhhccCCccEEEcccCCCCCCC-CCCCceEEecCC
Q 002309 94 E-------------------------TDIVAIIGPQCSTVAHIVSYVSNELQVPLLSFGVTDPTLSS-LQYPFFVRTTQS 147 (938)
Q Consensus 94 ~-------------------------~~V~aviGp~~s~~~~~va~~~~~~~iP~Is~~~~~~~l~~-~~~p~~~r~~ps 147 (938)
+ ++|.+||||.+|..+.+++++++.+++|+|+++++++.|++ .+|||+||+.|+
T Consensus 90 ~~~~~~~~~~ny~C~~~~~~~~~~~~~~v~aviG~~~S~~s~~va~~~~~~~iP~Is~~a~~~~lsd~~~~p~~fr~~p~ 169 (555)
T 2e4u_A 90 RASLTKVDEAEYMCPDGSYAIQENIPLLIAGVIGGSYSSVSIQVANLLRLFQIPQISYASTSAKLSDKSRYDYFARTVPP 169 (555)
T ss_dssp HTTC--------------------CCCCEEEEEECSSHHHHHHHHHHHGGGTCCEEESSCCCGGGGCTTTCTTEEESSCC
T ss_pred hCcCcccCCCCcccCCCccccccccCCceEEEECCCCcHHHHHHHHHHhCcCCceEeCCcCCCccCCcccCCCceeeCCC
Confidence 3 47999999999999999999999999999999999999998 579999999999
Q ss_pred chHHHHHHHHHHHhcCCcEEEEEEEcCccccchHHHHHHHHhhcceEEEEEeecCCCCCCChhhHHHHHHHHhc-CCceE
Q 002309 148 DSYQMTAVAEMVSYYGWNAVSVIFVDNEYGRNGVSALNDKLAERRCRISYKSGIPPESGVNTGYVMDLLVKVAL-MESRV 226 (938)
Q Consensus 148 ~~~~~~ai~~~l~~~~w~~vaii~~d~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~lk~-~~~~v 226 (938)
+..|+.++++++++|||++|++|++|++||+...+.+++++++.|+||++...++.. ....++..++++++. +++||
T Consensus 170 d~~~~~a~~~ll~~fgw~~V~ii~~d~~~g~~~~~~~~~~~~~~gi~v~~~~~~~~~--~~~~~~~~~l~~i~~~s~a~v 247 (555)
T 2e4u_A 170 DFYQAKAMAEILRFFNWTYVSTVASEGDYGETGIEAFEQEARLRNICIATAEKVGRS--NIRKSYDSVIRELLQKPNARV 247 (555)
T ss_dssp HHHHHHHHHHHHHHTTCCEEEEEEESSTTHHHHHHHHHHHHHTTTCEEEEEEEECTT--CCHHHHHHHHHHHHTCTTCCE
T ss_pred hHHHHHHHHHHHHHcCCeEEEEEEeeChHHHHHHHHHHHHHHHCCccEEEEEEeCCC--CChHHHHHHHHHHhccCCCCE
Confidence 999999999999999999999999999999999999999999999999998888763 347889999999964 79999
Q ss_pred EEEEeChhhHHHHHHHHHHcCCCCCCeEEEEeCcchhcccCCCCChhhhhccccEEEEEEcCCCChhhHH----------
Q 002309 227 IVLHVSPSLGFQVFSVAKYLGMMGNGYVWIATDWLAYMLDSASLPSETLESMQGVLVLRQHIPESDRKKN---------- 296 (938)
Q Consensus 227 iv~~~~~~~~~~~l~~a~~~g~~~~~~~wi~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~---------- 296 (938)
||+++...++..+++++.++|+ +++||.++.|....... ....+.++|++++.++..+.+.+++
T Consensus 248 Ii~~~~~~~~~~~~~~~~~~g~---~~~~i~s~~~~~~~~~~---~~~~~~~~G~l~~~~~~~~ipgf~~f~~~~~p~~~ 321 (555)
T 2e4u_A 248 VVLFMRSDDSRELIAAANRVNA---SFTWVASDGWGAQESIV---KGSEHVAYGAITLELASHPVRQFDRYFQSLNPYNN 321 (555)
T ss_dssp EEEECCHHHHHHHHHHHHHTTC---CCEEEECTTTTTCGGGT---TTCHHHHTTCEEEEECCCCCHHHHHHHHTCCTTTC
T ss_pred EEEEcCHHHHHHHHHHHHHhcC---CeEEEEeccccccchhh---ccchhhcceEEEEEeccCCCCcHHHHHhhCCcccC
Confidence 9999999999999999999887 68999998876542221 1223567899999887665555544
Q ss_pred -----HHHHHhhhcCCC---------------------CCCCchhhHHhHHHHHHHHHHHHHHhcCCcccccCCcccccc
Q 002309 297 -----FLSRWKNLTGGS---------------------LGMNSYGLYAYDSVWLLAHAIESFFNQGGKISFSNDSRLKTM 350 (938)
Q Consensus 297 -----f~~~~~~~~~~~---------------------~~~~~~~~~~YDav~~~a~Al~~~~~~~~~~~~~~~~~~~~~ 350 (938)
|.+.|+..|+.. ..+..++..+||||+++|+||+++..+....
T Consensus 322 p~~~~~~~~w~~~f~c~~~~~~~~~~~C~~~e~l~~~~~~~~~~~~~~YdAVya~A~AL~~~~~~~~~~----------- 390 (555)
T 2e4u_A 322 HRNPWFRDFWEQKFQCSLQNKRNHRQVCDKHLAIDSSNYEQESKIMFVVNAVYAMAHALHKMQRTLCPQ----------- 390 (555)
T ss_dssp TTCTTHHHHHHHHTTCCCC------CCCCTTCCCCTTTCCCCTTHHHHHHHHHHHHHHHHHHHHHHCTT-----------
T ss_pred CCCHHHHHHHHHHcCCCCCCCCccCCCCCCccccccccccccccchhhHHHHHHHHHHHHHHHhhhcCC-----------
Confidence 444566665310 0144678899999999999999987531100
Q ss_pred CCCccccCCccccCchHHHHH-HHhcCccc------ccccc-eEEcCCCCCccceEEEEEee--cc--ceEEEEEeeCCC
Q 002309 351 EGGNLHLGAMSIFDDGMLLLG-NILQSNLV------GLTGP-LKFNSDRSLIHAAYDIINVI--GT--GFRMIGYWSNYS 418 (938)
Q Consensus 351 ~~~~~~~~~~~~~~~g~~l~~-~l~~~~f~------G~tG~-v~F~~~g~~~~~~~~I~~~~--~~--~~~~Vg~w~~~~ 418 (938)
....|...... ++++|++ +|++++|+ |.+|+ +.||++|++ ...|+|++++ ++ .+++||.|++
T Consensus 391 --~~~~~~~~~~~-~~~~l~~~~L~~v~f~~~~~~~g~~G~~v~fd~~Gd~-~~~y~I~~~~~~~g~~~~~~VG~~~~-- 464 (555)
T 2e4u_A 391 --TTKLCDAMKIL-DGKKLYKEYLLKIQFTAPFNPNKGADSIVKFDTFGDG-MGRYNVFNLQQTGGKYSYLKVGHWAE-- 464 (555)
T ss_dssp --CSSCCGGGTSC-CHHHHHHHHTTCEEECCSSSCCSSSCCEEECCTTSCC-CCCEEEEEEECTTSSCEEEEEEEESS--
T ss_pred --CCccccccCCC-CcccccHHhHhceeecccccccCCCCCeEEEcCCCCc-cceEEEEEEEecCCcEEEEEEEEecc--
Confidence 00123322223 4889999 99999999 99998 999999996 5889999996 33 4799999984
Q ss_pred CCccCCCcccccCCCCCCccccccceeEeCCCCccCCCccc
Q 002309 419 GLSKEPPETLYAQPFNRSSTIQHLHSVIWPGETLSKPRGWV 459 (938)
Q Consensus 419 g~~~~~~~~~~~~~~~~~~~~~~l~~i~w~g~~~~~P~~~~ 459 (938)
+|.+ +...|.|++ .++|++.|
T Consensus 465 ~l~i------------------~~~~I~W~~--~~~P~S~C 485 (555)
T 2e4u_A 465 TLSL------------------DVDSIHWSR--NSVPTSQC 485 (555)
T ss_dssp SEEC------------------CGGGCCCTT--SSCCCCCS
T ss_pred eEEE------------------eccccccCC--CCCcceee
Confidence 3322 123588987 57888876
No 12
>3qek_A NMDA glutamate receptor subunit; amino terminal domain, ION channel, NMDA receptor, allosteri modulation, phenylethanolamine, polyamine; HET: NAG BMA; 2.00A {Xenopus laevis} PDB: 3qel_A* 3qem_A* 3q41_A*
Probab=100.00 E-value=5.8e-46 Score=417.09 Aligned_cols=338 Identities=23% Similarity=0.340 Sum_probs=284.7
Q ss_pred CCeeEEEEEEeeCCCcchhHHHHHHHHHHHHHhcCCCCCCCCEEEEEEccCCCChHHHHHHHHH-HHhcCcEEEEc----
Q 002309 28 RPAVVNVGALFTLDSTIGRVAKIAIEEAVKDVNSNSSILHGTKLNITMQSSNCSGFIGMVEALR-FMETDIVAIIG---- 102 (938)
Q Consensus 28 ~~~~i~IG~i~~~~~~~g~~~~~a~~~Av~~iN~~~~il~g~~l~~~~~D~~~~~~~a~~~a~~-li~~~V~aviG---- 102 (938)
.+++|+||+++|++ ..+.|+++|+++||++++. .|++|+++..|+++|+..++..+++ |++++|.+|||
T Consensus 2 ~~~~i~IG~i~~~s-----~~~~~~~lAv~~iN~~~~~-~~~~l~~~~~d~~~d~~~a~~~~~~~Li~~~V~aiiG~~~~ 75 (384)
T 3qek_A 2 DPKIVNIGAVLSTK-----KHEQIFREAVNQANKRHFT-RKIQLQATSVTHRPNAIQMALSVCEDLISSQVYAILVSHPP 75 (384)
T ss_dssp CCEEEEEEEEESSH-----HHHHHHHHHHHHHHHHSCC-SSEEEEEEEEECCSSHHHHHHHHHHHTGGGTEEEEEECC--
T ss_pred CceEEEEeEEeeCc-----hHHHHHHHHHHHHhccccC-CceEEEEEEecccCCHHHHHHHHHHHHHHcCceEEEEecCC
Confidence 46899999999998 5799999999999999876 5899999999999999999977666 88889999999
Q ss_pred -CCChhHHHHHHHhhccCCccEEEcccCCCCCCC-CCCCceEEecCCchHHHHHHHHHHHhcCCcEEEEEEEcCccccch
Q 002309 103 -PQCSTVAHIVSYVSNELQVPLLSFGVTDPTLSS-LQYPFFVRTTQSDSYQMTAVAEMVSYYGWNAVSVIFVDNEYGRNG 180 (938)
Q Consensus 103 -p~~s~~~~~va~~~~~~~iP~Is~~~~~~~l~~-~~~p~~~r~~ps~~~~~~ai~~~l~~~~w~~vaii~~d~~~g~~~ 180 (938)
|.+|..+.+++++++.+++|+|+++++++.+++ ..|||+||+.|++..++.++++++++++|++|++||+|++||++.
T Consensus 76 ~~~~s~~~~a~~~~~~~~~iP~is~~~~~~~ls~~~~~~~~fr~~~~~~~~~~a~~~~~~~~gw~~v~ii~~d~~~G~~~ 155 (384)
T 3qek_A 76 APTDHLTPTPISYTAGFYRIPVIGLTTRMSIYSDKSIHLSFLRTVPPYSHQALVWFEMMRLFNWNHVILIVSDDHEGRAA 155 (384)
T ss_dssp ------CCHHHHHHHHTTTCCEEESSCCCGGGGCSSSCTTEEESSCCGGGHHHHHHHHHHHTTCCEEEEEEESSHHHHHH
T ss_pred CCccchhHHHHHHHHhcCCCCEEecccCchhccCcccCCceEEecCChHHHHHHHHHHHHHcCCeEEEEEEEcCcccHHH
Confidence 567888899999999999999999999999997 679999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhcceEEE-----------E----------EeecCCCCCCChhhHHHHHHHHhcCCceEEEEEeChhhHHHH
Q 002309 181 VSALNDKLAERRCRIS-----------Y----------KSGIPPESGVNTGYVMDLLVKVALMESRVIVLHVSPSLGFQV 239 (938)
Q Consensus 181 ~~~l~~~l~~~g~~v~-----------~----------~~~~~~~~~~~~~d~~~~l~~lk~~~~~viv~~~~~~~~~~~ 239 (938)
.+.+++++++.|++++ + ...+.. +..|+..++++++.+++|+|++++.+.++..+
T Consensus 156 ~~~~~~~~~~~g~~v~~~~~~~~~~v~~~~~~~~~~~~v~~~~~----~~~d~~~~l~~i~~~~~~vii~~~~~~~~~~~ 231 (384)
T 3qek_A 156 QKKLETLLEGKESKSKKRNYENLDQLSYDNKRGPKADKVLQFEP----GTKNLTALLLEAKELEARVIILSASEDDATAV 231 (384)
T ss_dssp HHHHHHHHC--------------CCSCCCCCCCCEEEEEEEECT----TCSCCHHHHHHHHTSSCCEEEEECCHHHHHHH
T ss_pred HHHHHHHHHhccCccccccccccceeeeccccCcccceecccCC----chhhHHHHHHHHHhcCCcEEEEECCHHHHHHH
Confidence 9999999999997542 1 112222 26789999999999999999999999999999
Q ss_pred HHHHHHcCCCCCCeEEEEeCcchhcccCCCCChhhhhccccEEEEEEcCCCChhhHHHHHHHhhhcCCCCCCCchhhHHh
Q 002309 240 FSVAKYLGMMGNGYVWIATDWLAYMLDSASLPSETLESMQGVLVLRQHIPESDRKKNFLSRWKNLTGGSLGMNSYGLYAY 319 (938)
Q Consensus 240 l~~a~~~g~~~~~~~wi~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~Y 319 (938)
+++|+++||++.+|+||+++.+... ....+.++|+++++.+.++. .++++|
T Consensus 232 ~~~a~~~g~~~~~~~~i~~~~~~~~-------~~~~~~~~g~lg~~~~~~~~----------------------~~~~~Y 282 (384)
T 3qek_A 232 YKSAAMLDMTGAGYVWLVGEREISG-------SALRYAPDGIIGLQLINGKN----------------------ESAHIS 282 (384)
T ss_dssp HHHHHHTTCSSTTCEEECCSGGGSG-------GGGSSCCTTCEEEEETTTTC----------------------HHHHHH
T ss_pred HHHHHHcCCccCCeEEEEecccccc-------ccccccCCccEEEEEcCCCc----------------------hhHHHH
Confidence 9999999999888999999987532 22346789999999876532 267899
Q ss_pred HHHHHHHHHHHHHHhcCCcccccCCccccccCCCcccc-CCccccCchHHHHHHHhcCcc-cccccceEEcCCCCCccce
Q 002309 320 DSVWLLAHAIESFFNQGGKISFSNDSRLKTMEGGNLHL-GAMSIFDDGMLLLGNILQSNL-VGLTGPLKFNSDRSLIHAA 397 (938)
Q Consensus 320 Dav~~~a~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~g~~l~~~l~~~~f-~G~tG~v~F~~~g~~~~~~ 397 (938)
|||+++|+|++++..+.... .....| ....+|+.+..|.+++.+++| +|++|++.||++|++....
T Consensus 283 dAV~~~a~Al~~~~~~~~~~------------~~~~~c~~~~~~~~~~~~l~~~~~~~~f~~G~~G~v~fd~~G~~~~~~ 350 (384)
T 3qek_A 283 DAVAVVAQAIHELFEMENIT------------DPPRGCVGNTNIWKTGPLFKRVLMSSKYPDGVTGRIEFNEDGDRKFAQ 350 (384)
T ss_dssp HHHHHHHHHHHHHHTSSSCC------------CCCSCCTTCCCCCTTHHHHHHHHHTCCEEEETTEEECBCTTSCBCSCC
T ss_pred HHHHHHHHHHHHHHhccCCC------------CCCCccccCCCccccHHHHHHHHhcCCccCCCCcceEECCCCCCCccc
Confidence 99999999999997653211 112224 345688889999999999998 9999999999999987899
Q ss_pred EEEEEeeccceEEEEEeeC
Q 002309 398 YDIINVIGTGFRMIGYWSN 416 (938)
Q Consensus 398 ~~I~~~~~~~~~~Vg~w~~ 416 (938)
|+|+|++++++++||+|+.
T Consensus 351 ~~I~~~~~~~~~~VG~w~~ 369 (384)
T 3qek_A 351 YSIMNLQNRKLVQVGIFNG 369 (384)
T ss_dssp EEEEEEETTEEEEEEEECS
T ss_pred EEEEEEcCCceEEEEEEeC
Confidence 9999999999999999983
No 13
>1dp4_A Atrial natriuretic peptide receptor A; periplasmic binding protein fold, dimer, hormone/growth FACT receptor, lyase complex; HET: NAG; 2.00A {Rattus norvegicus} SCOP: c.93.1.1 PDB: 1t34_A* 3a3k_A*
Probab=100.00 E-value=4.7e-46 Score=425.74 Aligned_cols=358 Identities=20% Similarity=0.254 Sum_probs=304.3
Q ss_pred eeEEEEEEeeCC---CcchhHHHH-HHHHHHHHHhcCCCCCCCCEEEEEEccC-----CCChHHHHHHHHHHHhc-CcEE
Q 002309 30 AVVNVGALFTLD---STIGRVAKI-AIEEAVKDVNSNSSILHGTKLNITMQSS-----NCSGFIGMVEALRFMET-DIVA 99 (938)
Q Consensus 30 ~~i~IG~i~~~~---~~~g~~~~~-a~~~Av~~iN~~~~il~g~~l~~~~~D~-----~~~~~~a~~~a~~li~~-~V~a 99 (938)
++|+||+++|++ +..|..... |+++|+|+||+++|+|+|++|+++++|+ +|++..|+..+.+++.+ +|.+
T Consensus 1 g~i~IG~l~p~sg~~~~~g~~~~~~a~~~Av~~iN~~ggil~g~~l~~~~~D~~~~p~~c~~~~a~~~a~~~l~~~~v~a 80 (435)
T 1dp4_A 1 SDLTVAVVLPLTNTSYPWSWARVGPAVELALARVKARPDLLPGWTVRMVLGSSENAAGVCSDTAAPLAAVDLKWEHSPAV 80 (435)
T ss_dssp CEEEEEEEECSSCCCSTTCHHHHHHHHHHHHHHHHTCTTSSTTCEEEEEEEECBCTTSSBCTTHHHHHHHHHHHHHCCSE
T ss_pred CceEEEEEccCcCCCCceeHHHHHHHHHHHHHHHHhCCCCCCCceEEEEEecCcCcccccchhhHHHHHHHHHHhcCceE
Confidence 479999999998 355667776 9999999999999999999999999999 56667888888888754 9999
Q ss_pred EEcCCChhHHHHHHHhhccCCccEEEcccCCCCCCCC-CCCceEEecCCchHHHHHHHHHHHhcCCcEEEEE------EE
Q 002309 100 IIGPQCSTVAHIVSYVSNELQVPLLSFGVTDPTLSSL-QYPFFVRTTQSDSYQMTAVAEMVSYYGWNAVSVI------FV 172 (938)
Q Consensus 100 viGp~~s~~~~~va~~~~~~~iP~Is~~~~~~~l~~~-~~p~~~r~~ps~~~~~~ai~~~l~~~~w~~vaii------~~ 172 (938)
||||.+|..+.+++++++.+++|+|+++++++.|+++ .|||+||+.|++..++.++++++++++|++|++| ++
T Consensus 81 viG~~~S~~~~av~~~~~~~~ip~is~~~~~~~ls~~~~~~~~fr~~p~~~~~~~a~~~~l~~~~w~~v~ii~~~d~~~~ 160 (435)
T 1dp4_A 81 FLGPGCVYSAAPVGRFTAHWRVPLLTAGAPALGIGVKDEYALTTRTGPSHVKLGDFVTALHRRLGWEHQALVLYADRLGD 160 (435)
T ss_dssp EECCCSHHHHHHHHHHHHHHTCCEEESCCCCGGGGCTTTSTTEEECSCCHHHHHHHHHHHHHHHTCCSEEEEEEECCSSS
T ss_pred EECCCChHHHHHHHHHHHhcCCcEEcccccccccCcccccCeEEEecCcHHHHHHHHHHHHHHCCCcEEEEEEEccCCCC
Confidence 9999999999999999999999999999999999984 5999999999999999999999999999999999 67
Q ss_pred cCccccchHHHHHHHHhh-cceEEEEEeecCCCCCCChhhHHHHHHHHhcCCceEEEEEeChhhHHHHHHHHHHcCCCCC
Q 002309 173 DNEYGRNGVSALNDKLAE-RRCRISYKSGIPPESGVNTGYVMDLLVKVALMESRVIVLHVSPSLGFQVFSVAKYLGMMGN 251 (938)
Q Consensus 173 d~~~g~~~~~~l~~~l~~-~g~~v~~~~~~~~~~~~~~~d~~~~l~~lk~~~~~viv~~~~~~~~~~~l~~a~~~g~~~~ 251 (938)
|++|| ..++.+.+.+.+ .|+||+....++.+ ..|+..++++|++ ++|+|++++.+.++..++++|+++|+..+
T Consensus 161 ~~~~g-~~~~~~~~~~~~~~g~~v~~~~~~~~~----~~d~~~~l~~i~~-~~~viv~~~~~~~~~~~~~~a~~~g~~~~ 234 (435)
T 1dp4_A 161 DRPCF-FIVEGLYMRVRERLNITVNHQEFVEGD----PDHYPKLLRAVRR-KGRVIYICSSPDAFRNLMLLALNAGLTGE 234 (435)
T ss_dssp CCHHH-HHHHHHHHHHHHHHCCEEEEEEECTTC----GGGHHHHHHHHHH-HCSEEEEESCHHHHHHHHHHHHHTTCCTT
T ss_pred cchHH-HHHHHHHHHHHhhcCeEEEEEEEecCc----hhhHHHHHHHHHh-hCceEEEecChHHHHHHHHHHHHcCCCCC
Confidence 77788 566778888888 99999987766433 7789999999998 99999999999999999999999999877
Q ss_pred CeEEEEeCcchhccc---------C-C---CCChhhhhccccEEEEEEcCCCChhhHHHHHHHhhhcCC-------CCCC
Q 002309 252 GYVWIATDWLAYMLD---------S-A---SLPSETLESMQGVLVLRQHIPESDRKKNFLSRWKNLTGG-------SLGM 311 (938)
Q Consensus 252 ~~~wi~~~~~~~~~~---------~-~---~~~~~~~~~~~g~~~~~~~~~~~~~~~~f~~~~~~~~~~-------~~~~ 311 (938)
+|+||.++.+..... . . ...+...+.++|++.+.+..|+.+..++|.++|++.++. ...+
T Consensus 235 ~~~~i~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~ 314 (435)
T 1dp4_A 235 DYVFFHLDVFGQSLKSAQGLVPQKPWERGDGQDRSARQAFQAAKIITYKEPDNPEYLEFLKQLKLLADKKFNFTVEDGLK 314 (435)
T ss_dssp TCEEEEECTTCTTSCSSCTTSCBCTTCCSSSCHHHHHHHGGGEEEEEECCCCSHHHHHHHHHHHHHHHHHHCCCCCCSGG
T ss_pred CEEEEEEecccccccccccccccCCcccCCcchHHHHHHhheeEEEecCCCCChhHHHHHHHHHHHhcCCCCcccccchh
Confidence 799999987654321 0 0 001233456889999888888888999999999876520 1125
Q ss_pred CchhhHHhHHHHHHHHHHHHHHhcCCcccccCCccccccCCCccccCCccccCchHHHHHHHhcCcccccccceEEcCCC
Q 002309 312 NSYGLYAYDSVWLLAHAIESFFNQGGKISFSNDSRLKTMEGGNLHLGAMSIFDDGMLLLGNILQSNLVGLTGPLKFNSDR 391 (938)
Q Consensus 312 ~~~~~~~YDav~~~a~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~l~~~~f~G~tG~v~F~~~g 391 (938)
+.+++++||||+++|+|++++..+++. +.++++|+++|++++|.|++|++.||++|
T Consensus 315 ~~~~~~~ydav~~~a~Al~~~~~~~~~------------------------~~~~~~l~~~l~~~~f~g~~G~v~fd~~g 370 (435)
T 1dp4_A 315 NIIPASFHDGLLLYVQAVTETLAQGGT------------------------VTDGENITQRMWNRSFQGVTGYLKIDRNG 370 (435)
T ss_dssp GHHHHHHHHHHHHHHHHHHHHHHTTCC------------------------TTCHHHHHHTTTTEEEEETTEEEEECTTS
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHcCCC------------------------CCCHHHHHHHHhCceeeccceeEEECCCC
Confidence 678999999999999999998654321 12488999999999999999999999999
Q ss_pred CCccceEEEEEe--eccceEEEEEeeCCC
Q 002309 392 SLIHAAYDIINV--IGTGFRMIGYWSNYS 418 (938)
Q Consensus 392 ~~~~~~~~I~~~--~~~~~~~Vg~w~~~~ 418 (938)
++. ..|+|+++ .++++++||.|++..
T Consensus 371 ~~~-~~~~i~~~~~~~g~~~~vg~~~~~~ 398 (435)
T 1dp4_A 371 DRD-TDFSLWDMDPETGAFRVVLNYNGTS 398 (435)
T ss_dssp BBC-CCEEEEEECTTTCCEEEEEEECTTT
T ss_pred Ccc-ceeEEEEecCCCCcEEEEEEecCCC
Confidence 975 79999999 566799999998765
No 14
>3ks9_A Mglur1, metabotropic glutamate receptor 1; glutamate receptors, dimerization, glutamic acid BIN structural genomics, structural genomics consortium; HET: Z99 NAG; 1.90A {Homo sapiens} SCOP: c.93.1.1 PDB: 1ewk_A* 1ewt_A* 1ewv_A 1isr_A* 1iss_A* 3lmk_A*
Probab=100.00 E-value=3e-45 Score=422.44 Aligned_cols=371 Identities=22% Similarity=0.360 Sum_probs=309.7
Q ss_pred cCCCCeeEEEEEEeeCCCc-----------------chhHHHHHHHHHHHHHhcCCCCCCCCEEEEEEccCCCChHHHHH
Q 002309 25 VSARPAVVNVGALFTLDST-----------------IGRVAKIAIEEAVKDVNSNSSILHGTKLNITMQSSNCSGFIGMV 87 (938)
Q Consensus 25 ~~~~~~~i~IG~i~~~~~~-----------------~g~~~~~a~~~Av~~iN~~~~il~g~~l~~~~~D~~~~~~~a~~ 87 (938)
....+++|.||++||.+.. .|.+...|+.+||||||+++++|||++|+++++|+|+++..|++
T Consensus 11 ~~~~~GDi~iGglf~vh~~~~~~~~~~~~c~~~~~~~g~~~~~a~~~AieeIN~~~~lLpn~tLg~~i~D~~~~~~~a~~ 90 (496)
T 3ks9_A 11 VARMDGDVIIGALFSVHHQPPAEKVPERKCGEIREQYGIQRVEAMFHTLDKINADPVLLPNITLGSEIRDSCWHSSVALE 90 (496)
T ss_dssp CEEECCSEEEEEEECSBCCCCGGGTTTTCCCCBCTTTTHHHHHHHHHHHHHHHTCSSSSTTCCEEEEEEECTTCHHHHHH
T ss_pred ceecCCCEEEEEEEEeEEcCccCCCCCCCCccccchhhHHHHHHHHHHHHHHhCCCCCCCCceEeEEEEEcCCCcHHHHH
Confidence 3457899999999998731 35678899999999999999999999999999999999999999
Q ss_pred HHHHHH-----------------------------hcCcEEEEcCCChhHHHHHHHhhccCCccEEEcccCCCCCCC-CC
Q 002309 88 EALRFM-----------------------------ETDIVAIIGPQCSTVAHIVSYVSNELQVPLLSFGVTDPTLSS-LQ 137 (938)
Q Consensus 88 ~a~~li-----------------------------~~~V~aviGp~~s~~~~~va~~~~~~~iP~Is~~~~~~~l~~-~~ 137 (938)
.+.+++ +++|.|||||.+|..+.+++++++.+++|+|+++++++.|++ .+
T Consensus 91 ~a~~ll~~~~~s~~~~~~~n~~C~~~~~~~~~~~~~~~v~aviG~~~S~~s~ava~i~~~~~iP~Is~~a~~~~lsd~~~ 170 (496)
T 3ks9_A 91 QSIEFIRDSLISIRDEKDGINRCLPDGQSLPPGRTKKPIAGVIGPGSSSVAIQVQNLLQLFDIPQIAYSATSIDLSDKTL 170 (496)
T ss_dssp HHHHHHSTTC--------------------------CCEEEEECCSSHHHHHHHHHHHGGGTCCEEESSCCCGGGGCTTT
T ss_pred HHHHHHHhhhccccccCCCCccccCcccccccccCCCceEEEECCCccHHHHHHHHHHhhcceeEECCCcCCccccCccC
Confidence 999998 338999999999999999999999999999999999999999 57
Q ss_pred CCceEEecCCchHHHHHHHHHHHhcCCcEEEEEEEcCccccchHHHHHHHHhhcceEEEEEeecCCCCCCChhhHHHHHH
Q 002309 138 YPFFVRTTQSDSYQMTAVAEMVSYYGWNAVSVIFVDNEYGRNGVSALNDKLAERRCRISYKSGIPPESGVNTGYVMDLLV 217 (938)
Q Consensus 138 ~p~~~r~~ps~~~~~~ai~~~l~~~~w~~vaii~~d~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~d~~~~l~ 217 (938)
|||+||+.|+|..++.++++++++|+|++|++|++|++||+...+.+++++++.|+||++.+.++.. ....++..+++
T Consensus 171 ~p~~frt~psd~~~~~ai~~ll~~fgw~~V~li~~dd~~G~~~~~~~~~~~~~~Gi~v~~~~~i~~~--~~~~d~~~~l~ 248 (496)
T 3ks9_A 171 YKYFLRVVPSDTLQARAMLDIVKRYNWTYVSAVHTEGNYGESGMDAFKELAAQEGLSIAHSDKIYSN--AGEKSFDRLLR 248 (496)
T ss_dssp CTTEEESSCCTHHHHHHHHHHHHHTTCCEEEEEEESSHHHHHHHHHHHHHHHHTTCEEEEEEEECTT--CCHHHHHHHHH
T ss_pred CCceEEecCChHHHHHHHHHHHHHcCCcEEEEEEeccHHHHHHHHHHHHHHHHcCceEEEEEEECCC--CCHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999998888654 45789999999
Q ss_pred HHhcC--CceEEEEEeChhhHHHHHHHHHHcCCCCCCeEEEEeCcchhcccCCCCChhhhhccccEEEEEEcCCCChhhH
Q 002309 218 KVALM--ESRVIVLHVSPSLGFQVFSVAKYLGMMGNGYVWIATDWLAYMLDSASLPSETLESMQGVLVLRQHIPESDRKK 295 (938)
Q Consensus 218 ~lk~~--~~~viv~~~~~~~~~~~l~~a~~~g~~~~~~~wi~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 295 (938)
+|+++ +++||++++....+..++++++++|+.. .++||.+++|...... . ......+.|.+++.++.++.+.++
T Consensus 249 ~i~~~~~~a~vii~~~~~~~~~~l~~~~~~~g~~~-k~~~i~s~~w~~~~~~--~-~~~~~~~~G~l~~~~~~~~ipgf~ 324 (496)
T 3ks9_A 249 KLRERLPKARVVVCFCEGMTVRGLLSAMRRLGVVG-EFSLIGSDGWADRDEV--I-EGYEVEANGGITIKLQSPEVRSFD 324 (496)
T ss_dssp HHHTTTTTTCEEEEECCHHHHHHHHHHHHHHTCCS-CCEEEECTTTTTCHHH--H-TTCHHHHTTCEEEEECCCCCHHHH
T ss_pred HHHhccCceEEEEEecChHHHHHHHHHHHHhCCCC-cEEEEEechhcccccc--c-cccccccCceEEEeccCCcCcchH
Confidence 99984 8999999999999999999999999853 4689999888643211 0 122356899999999999999999
Q ss_pred HHHHH---------------HhhhcC---CC---------------C------CCCchhhHHhHHHHHHHHHHHHHHhcC
Q 002309 296 NFLSR---------------WKNLTG---GS---------------L------GMNSYGLYAYDSVWLLAHAIESFFNQG 336 (938)
Q Consensus 296 ~f~~~---------------~~~~~~---~~---------------~------~~~~~~~~~YDav~~~a~Al~~~~~~~ 336 (938)
+|++. |+..|. .+ . ........+|+||+++|+|||+++.+.
T Consensus 325 ~fl~~~~p~~~p~d~~l~~~W~~~f~C~~~~~~~~~~~~~~~C~~~~~l~~~~~~~~~~~~vy~AVyavAhALh~m~~~~ 404 (496)
T 3ks9_A 325 DYFLKLRLDTNTRNPWFPEFWQHRFQCRLPGHLLENPNFKRICTGNESLEENYVQDSKMGFVINAIYAMAHGLQNMHHAL 404 (496)
T ss_dssp HHHTTCCTTTCCSCTTHHHHHHHHTTCBCCC-----CCCSSBCCSCCCTTTTCCCCTTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHhccCCcCCCCCCHHHHHHHHHHcCCCCCCCccccccccCCCCCcccccccccccchHHHHHHHHHHHHHHHHHHHhcc
Confidence 88754 444432 00 0 001122469999999999999997542
Q ss_pred CcccccCCccccccCCCccccCCccccCchHHHHHHHhcCcccccccc-eEEcCCCCCccceEEEEEeec-----cceEE
Q 002309 337 GKISFSNDSRLKTMEGGNLHLGAMSIFDDGMLLLGNILQSNLVGLTGP-LKFNSDRSLIHAAYDIINVIG-----TGFRM 410 (938)
Q Consensus 337 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~l~~~~f~G~tG~-v~F~~~g~~~~~~~~I~~~~~-----~~~~~ 410 (938)
+.. ....|....++ ++++|+++|++++|++.+|+ +.||++|+. ...|+|+|++. ..+++
T Consensus 405 ~~~-------------~~~~c~~~~~~-~~~qL~~~Lk~v~f~~~~g~~v~fd~~gd~-~~~YdI~n~~~~~~~~~~~~~ 469 (496)
T 3ks9_A 405 CPG-------------HVGLCDAMKPI-DGSKLLDFLIKSSFIGVSGEEVWFDEKGDA-PGRYDIMNLQYTEANRYDYVH 469 (496)
T ss_dssp STT-------------CSSCCGGGSSC-CHHHHHHHHHTCEEECTTSCEEECCTTSCC-CCEEEEEEEEECC--CEEEEE
T ss_pred CCC-------------CCCCCcCCCCC-CHHHHHHHHHhcCCcCCCCCEEEECCCCCc-cceEEEEEEEECCCCCEEEEE
Confidence 110 11234444445 48999999999999999995 999999994 78999999973 23689
Q ss_pred EEEeeC
Q 002309 411 IGYWSN 416 (938)
Q Consensus 411 Vg~w~~ 416 (938)
||.|++
T Consensus 470 VG~~~~ 475 (496)
T 3ks9_A 470 VGTWHE 475 (496)
T ss_dssp EEEEET
T ss_pred EEEEeC
Confidence 999973
No 15
>3mq4_A Mglur7, metabotropic glutamate receptor 7; glutamate receptors, dimerization, glutamic acid BIN structural genomics, structural genomics consortium; HET: Z99; 2.80A {Homo sapiens} SCOP: c.93.1.0 PDB: 2e4z_A*
Probab=100.00 E-value=7.5e-46 Score=426.93 Aligned_cols=369 Identities=23% Similarity=0.390 Sum_probs=281.5
Q ss_pred CCCCeeEEEEEEeeCCC-------------cchhHHHHHHHHHHHHHhcCCCCCCCCEEEEEEccCCCChHHHHHHHHHH
Q 002309 26 SARPAVVNVGALFTLDS-------------TIGRVAKIAIEEAVKDVNSNSSILHGTKLNITMQSSNCSGFIGMVEALRF 92 (938)
Q Consensus 26 ~~~~~~i~IG~i~~~~~-------------~~g~~~~~a~~~Av~~iN~~~~il~g~~l~~~~~D~~~~~~~a~~~a~~l 92 (938)
...+++|+||+++|++. ..|.+...|+.+|||+||+++++|||++|+++++|+|+++..|++.+.++
T Consensus 11 ~~~~gdi~IG~lf~l~~~~~~~~~C~~~~~~~g~~~~~a~~~AieeIN~~~~lLpn~~L~~~i~D~~~~~~~a~~~a~~l 90 (481)
T 3mq4_A 11 IRIEGDVTLGGLFPVHAKGPSGVPCGDIKRENGIHRLEAMLYALDQINSDPNLLPNVTLGARILDTCSRDTYALEQSLTF 90 (481)
T ss_dssp EEECCSEEEEEEECSBCCC-----CCSBCTTTTHHHHHHHHHHHHHHTTCSSSSSSCCEEEEEEECTTCHHHHHHHHGGG
T ss_pred cccCCCEEEEEEEEceeCCCCCCCCccccchhhHHHHHHHHHHHHHHhCCCCcCCCceEEEEEEeCCCChHHHHHHHHHH
Confidence 45678999999999983 35788899999999999999999999999999999999999999999999
Q ss_pred Hh-----------------------cCcEEEEcCCChhHHHHHHHhhccCCccEEEcccCCCCCCC-CCCCceEEecCCc
Q 002309 93 ME-----------------------TDIVAIIGPQCSTVAHIVSYVSNELQVPLLSFGVTDPTLSS-LQYPFFVRTTQSD 148 (938)
Q Consensus 93 i~-----------------------~~V~aviGp~~s~~~~~va~~~~~~~iP~Is~~~~~~~l~~-~~~p~~~r~~ps~ 148 (938)
++ ++|.|||||.+|..+.+++++++.+++|+|+++++++.|++ .+|||+||+.|++
T Consensus 91 l~~~~~~~~pny~C~~~~~~~~~~~~~v~aiiG~~~S~~s~ava~~~~~~~iP~Is~~a~~~~lsd~~~~p~~fr~~psd 170 (481)
T 3mq4_A 91 VQALIQKDTSDVRCTNGEPPVFVKPEKVVGVIGASGSSVSIMVANILRLFQIPQISYASTAPELSDDRRYDFFSRVVPPD 170 (481)
T ss_dssp GGGGSCCCC--------------CCCCEEEEECCSSHHHHHHHHHHHTTTTCCEEESSCCCGGGGCTTTTTTEEESSCCT
T ss_pred HhCCcccCCCCcccCCCCCcccccCCCcEEEEcCCCcHHHHHHHHHHHhCCCCEEccccCCccccCcccCCceEEecCch
Confidence 86 46999999999999999999999999999999999999998 6799999999999
Q ss_pred hHHHHHHHHHHHhcCCcEEEEEEEcCccccchHHHHHHHHhh-cceEEEEEeecCCCCCCChh--hHHHHHHHHh-cCCc
Q 002309 149 SYQMTAVAEMVSYYGWNAVSVIFVDNEYGRNGVSALNDKLAE-RRCRISYKSGIPPESGVNTG--YVMDLLVKVA-LMES 224 (938)
Q Consensus 149 ~~~~~ai~~~l~~~~w~~vaii~~d~~~g~~~~~~l~~~l~~-~g~~v~~~~~~~~~~~~~~~--d~~~~l~~lk-~~~~ 224 (938)
..++.++++++++|||++|++|++|++||+...+.+++.+++ .|+||++...++.. .... ++..++.+++ .+++
T Consensus 171 ~~~~~a~~~ll~~fgw~~V~li~~d~~~G~~~~~~~~~~~~~~~Gi~va~~~~i~~~--~~~~~~d~~~~l~~i~~~s~a 248 (481)
T 3mq4_A 171 SFQAQAMVDIVKALGWNYVSTLASEGSYGEKGVESFTQISKEAGGLSIAQSVRIPQE--RKDRTIDFDRIIKQLLDTPNS 248 (481)
T ss_dssp HHHHHHHHHHHHHHTCCEEEEC---CHHHHHHHHHHHHCC---CCCEECCCCCCCCC--------CCSHHHHCCCCC---
T ss_pred HHHHHHHHHHHHHCCCeEEEEEEEcchhHHHHHHHHHHHHHHhCCEEEEEEEEcCCC--CccchHHHHHHHHHHHhcCCC
Confidence 999999999999999999999999999999999999998885 79999988888754 2233 7888999998 5899
Q ss_pred eEEEEEeChhhHHHHHHHHHHcCCCCCCeEEEEeCcchhcccCCCCChhhhhccccEEEEEEcCCCChhhHHHHHH----
Q 002309 225 RVIVLHVSPSLGFQVFSVAKYLGMMGNGYVWIATDWLAYMLDSASLPSETLESMQGVLVLRQHIPESDRKKNFLSR---- 300 (938)
Q Consensus 225 ~viv~~~~~~~~~~~l~~a~~~g~~~~~~~wi~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~f~~~---- 300 (938)
||||+++...++..++++++++|+.. +++||.++.|...... . ......+.|.+++.++..+.+.+++|++.
T Consensus 249 ~vIi~~~~~~~~~~l~~~~~~~g~~~-~~~wI~s~~w~~~~~~--~-~~~~~~~~G~l~~~~~~~~ipgf~~fl~~~~p~ 324 (481)
T 3mq4_A 249 RAVVIFANDEDIKQILAAAKRADQVG-HFLWVGSDSWGSKINP--L-HQHEDIAEGAITIQPKRATVEGFDAYFTSRTLE 324 (481)
T ss_dssp -CEEECCCSSHHHHHC-----------CCCEEEC--------------------CCCEEEEECCCCCHHHHHHHHTCCTT
T ss_pred EEEEEEEChHHHHHHHHHHHHccCCc-ceEEEEECcccccccc--c-cccchhhccEEEEecCcCccccHHHHhhcCCcC
Confidence 99999999999999999999999854 4899999988654322 1 12346789999999999999999888754
Q ss_pred -----------HhhhcC---C---------------CC--------CCCchhhHHhHHHHHHHHHHHHHHhcCCcccccC
Q 002309 301 -----------WKNLTG---G---------------SL--------GMNSYGLYAYDSVWLLAHAIESFFNQGGKISFSN 343 (938)
Q Consensus 301 -----------~~~~~~---~---------------~~--------~~~~~~~~~YDav~~~a~Al~~~~~~~~~~~~~~ 343 (938)
|+..|. . .+ ........+||||+++|+||++++.+....
T Consensus 325 ~~p~d~~~~~~w~~~f~C~~~~~~~~~~~~~~~Ct~~e~l~~~~~~~~~~~~~~vy~AVyavA~ALh~m~~~~~~~---- 400 (481)
T 3mq4_A 325 NNRRNVWFAEYWEENFNCKLTISGSKKEDTDRKCTGQERIGKDSNYEQEGKVQFVIDAVYAMAHALHHMNKDLCAD---- 400 (481)
T ss_dssp TCTTCTTHHHHHHHHHTCCC------------CCCSCCCTTTSSCCCCCTTHHHHHHHHHHHHHHHHHHHHHHCC-----
T ss_pred cCCCCHHHHHHHHHhcCCCCCCccccccccCCCCCCccccCcCCcccccchhhhHHHHHHHHHHHHHHHHHhhCCC----
Confidence 443332 0 00 001334579999999999999997532111
Q ss_pred CccccccCCCccccCCccccCchHHHHHHHhcCccccccc-ceEEcCCCCCccceEEEEEeec---c--ceEEEEEee
Q 002309 344 DSRLKTMEGGNLHLGAMSIFDDGMLLLGNILQSNLVGLTG-PLKFNSDRSLIHAAYDIINVIG---T--GFRMIGYWS 415 (938)
Q Consensus 344 ~~~~~~~~~~~~~~~~~~~~~~g~~l~~~l~~~~f~G~tG-~v~F~~~g~~~~~~~~I~~~~~---~--~~~~Vg~w~ 415 (938)
....|....++ ++++|+++|++++|++.+| .|.||++|++ ...|+|+|++. + .+++||.|+
T Consensus 401 ---------~~~~c~~~~~~-~~~qL~~~Lk~v~F~~~~G~~v~fd~~Gd~-~~~YdI~n~~~~~~~~~~~~~VG~~~ 467 (481)
T 3mq4_A 401 ---------YRGVCPEMEQA-GGKKLLKYIRNVNFNGSAGTPVMFNKNGDA-PGRYDIFQYQTTNTSNPGYRLIGQWT 467 (481)
T ss_dssp ------------CCHHHHTS-CHHHHHHHHHTCEEECTTSSEEECCTTSCC-CCEEEEEEEC-----CCCEEEEEEEE
T ss_pred ---------CCCCCCCCCCc-CHHHHHHHHhcceeecCCCCEEEECCCCCC-ceeEEEEEEEECCCCcEEEEEEEEEc
Confidence 01134433344 4889999999999999999 6999999995 78999999972 2 568999998
No 16
>3qel_B Glutamate [NMDA] receptor subunit epsilon-2; ION channel, allosteric modulation, phenylethanolamine, N-glycosylation, extracellular; HET: NAG BMA MAN FUC QEL; 2.60A {Rattus norvegicus} PDB: 3qem_B* 3jpw_A* 3jpy_A*
Probab=100.00 E-value=3e-40 Score=364.91 Aligned_cols=339 Identities=15% Similarity=0.242 Sum_probs=262.2
Q ss_pred CeeEEEEEEeeCCCcchhHHHHHHHHHHHHHhcCCCCCCCCEEEEEEc-cCCCChHHHHHHHHHHHhc-CcEEEEc-CCC
Q 002309 29 PAVVNVGALFTLDSTIGRVAKIAIEEAVKDVNSNSSILHGTKLNITMQ-SSNCSGFIGMVEALRFMET-DIVAIIG-PQC 105 (938)
Q Consensus 29 ~~~i~IG~i~~~~~~~g~~~~~a~~~Av~~iN~~~~il~g~~l~~~~~-D~~~~~~~a~~~a~~li~~-~V~aviG-p~~ 105 (938)
+..+.||++|..++. +.+++-|++..|.-. ...++..++. .+.+||+.+...+|+++.. +|.|||| |.+
T Consensus 2 ~~~~~v~~~~~~~~~-----~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~dp~~~~~~~C~~l~~~~V~aiIgg~~s 73 (364)
T 3qel_B 2 PPSIGIAVILVGTSD-----EVAIKDAHEKDDFHH---LSVVPRVELVAMNETDPKSIITRICDLMSDRKIQGVVFADDT 73 (364)
T ss_dssp CCEEEEEEEEESSCC-----HHHHTC------------CCSEEEEEEEEECCCSHHHHHHHHHHHHHHSCEEEEEEEESS
T ss_pred CCceEEEEEEcccch-----hhhhccccCcccccc---CCccceEEEEEecCCCHHHHHHHHHHHHHhCCeEEEEecCCC
Confidence 457999999977653 889999999998543 2367776554 4667999999999999976 7988885 555
Q ss_pred hhHHHH--HHHhhccCCccEEEcccCCC-CCCC-CCCCceEEecCCchHHHHHHHHHHHhcCCcEEEEEEEcCccccchH
Q 002309 106 STVAHI--VSYVSNELQVPLLSFGVTDP-TLSS-LQYPFFVRTTQSDSYQMTAVAEMVSYYGWNAVSVIFVDNEYGRNGV 181 (938)
Q Consensus 106 s~~~~~--va~~~~~~~iP~Is~~~~~~-~l~~-~~~p~~~r~~ps~~~~~~ai~~~l~~~~w~~vaii~~d~~~g~~~~ 181 (938)
+..+.+ ++.+++.++||+|++++++| .|++ .+||+|||+.|+|..|++++++++++|||++|++||+|+ .+.
T Consensus 74 ~~~a~a~~v~~i~~~~~iP~IS~~at~~~~lsd~~~~p~f~Rt~psd~~q~~ai~~ll~~fgW~~V~iI~~d~----~g~ 149 (364)
T 3qel_B 74 DQEAIAQILDFISAQTLTPILGIHGGSSMIMADKDESSMFFQFGPSIEQQASVMLNIMEEYDWYIFSIVTTYF----PGY 149 (364)
T ss_dssp CCTHHHHHHHHHHHHHTCCEEEEEGGGGSCCSSCCTTCCEEESSCCHHHHHHHHHHHHHHTTCCEEEEEEESC----TTH
T ss_pred CchHHHHHHHHHHhccCCCEEEeecCCCCcCCCcccCceEEEcCCChHHHHHHHHHHHHHCCCeEEEEEEeCC----ccH
Confidence 444544 99999999999999999998 8998 579999999999999999999999999999999999884 345
Q ss_pred HHHHHHHhhc--ce--EEEEEeecCCCCCCChhhHHHHH-HHHhcCCceEEEEEeChhhHHHHHHHHHHcCCCCCCeEEE
Q 002309 182 SALNDKLAER--RC--RISYKSGIPPESGVNTGYVMDLL-VKVALMESRVIVLHVSPSLGFQVFSVAKYLGMMGNGYVWI 256 (938)
Q Consensus 182 ~~l~~~l~~~--g~--~v~~~~~~~~~~~~~~~d~~~~l-~~lk~~~~~viv~~~~~~~~~~~l~~a~~~g~~~~~~~wi 256 (938)
+.+.+.+++. |. |+.+...++.. ....++...+ +++++++++|||++|+.+.+..++++|.++||++++|+||
T Consensus 150 ~~~~~~l~~~~~~~~ici~~~~~i~~~--~~~~~~~~~l~~~i~~~~a~ViIv~~~~~~~~~ll~~a~~~g~~~~~y~wI 227 (364)
T 3qel_B 150 QDFVNKIRSTIENSFVGWELEEVLLLD--MSLDDGDSKIQNQLKKLQSPIILLYCTKEEATYIFEVANSVGLTGYGYTWI 227 (364)
T ss_dssp HHHHHHHHHHHHTCSSCCEEEEEEEEC--TTSCSSSCHHHHHHTTCCCSEEEEESCHHHHHHHHHHHHTTTCSSTTCEEE
T ss_pred HHHHHHHHHHhhccccceEEEEEEccC--CCcccHHHHHHHHHHccCCcEEEEEcCHHHHHHHHHHHHHcCCCCCCeEEE
Confidence 6666666655 43 77665544433 2245677788 6999999999999999999999999999999999999999
Q ss_pred EeCcchhcccCCCCChhhhhccccEEEEEEcCCCChhhHHHHHHHhhhcCCCCCCCchhhHHhHHHHHHHHHHHHHHhcC
Q 002309 257 ATDWLAYMLDSASLPSETLESMQGVLVLRQHIPESDRKKNFLSRWKNLTGGSLGMNSYGLYAYDSVWLLAHAIESFFNQG 336 (938)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~YDav~~~a~Al~~~~~~~ 336 (938)
+++.+....+. .+ .+...|+++++++. |++ .+.+++||||+++|+|++++.++.
T Consensus 228 ~t~~~~~~~~~--~~---~~~~~g~~~~~~~~------------W~~---------~~~~~~yDaV~~~A~A~~~~~~~~ 281 (364)
T 3qel_B 228 VPSLVAGDTDT--VP---SEFPTGLISVSYDE------------WDY---------GLPARVRDGIAIITTAASDMLSEH 281 (364)
T ss_dssp ECHHHHCSTTC--CC---TTSCTTCEECCBCT------------TTS---------CHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred EecccccCccc--cc---ccCCCceEEEeecc------------chh---------hHHHHHHHHHHHHHHHHHHHHhcc
Confidence 99876433322 11 24567888876643 332 245789999999999999987654
Q ss_pred CcccccCCccccccCCCccccCCcc--ccCchHHHHHHHhcCcccccccceEEcCCCCCccceEEEEEee-ccceEEEEE
Q 002309 337 GKISFSNDSRLKTMEGGNLHLGAMS--IFDDGMLLLGNILQSNLVGLTGPLKFNSDRSLIHAAYDIINVI-GTGFRMIGY 413 (938)
Q Consensus 337 ~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~g~~l~~~l~~~~f~G~tG~v~F~~~g~~~~~~~~I~~~~-~~~~~~Vg~ 413 (938)
..++ .....|.... +|.+|..|+++|++++|+|+ +++||++|+|.++.|+|+|++ ++++++||+
T Consensus 282 ~~i~-----------~~~~~C~~~~~~~~~~G~~l~~~l~~v~f~Gl--~i~F~~~G~~~~~~~~Iinl~~~~~~~~VG~ 348 (364)
T 3qel_B 282 SFIP-----------EPKSSCYNTHEKRIYQSNMLNRYLINVTFEGR--DLSFSEDGYQMHPKLVIILLNKERKWERVGK 348 (364)
T ss_dssp SCCC-----------CCCSCSTTTTTGGGGCCSTTHHHHTCCEETTE--ECCBCTTSSBSSCCEEEEEECTTSCEEEEEE
T ss_pred CCCC-----------CCCCCCCCCCCCccCCHHHHHHHHhhceEeCc--eEEECCCCCcccceEEEEEEcCCCCcEEEEE
Confidence 3322 1233565543 67889999999999999998 899999999999999999998 688999999
Q ss_pred eeCCCCCc
Q 002309 414 WSNYSGLS 421 (938)
Q Consensus 414 w~~~~g~~ 421 (938)
|++ .+|+
T Consensus 349 W~~-~~L~ 355 (364)
T 3qel_B 349 WKD-KSLQ 355 (364)
T ss_dssp ECS-SCEE
T ss_pred ECC-CeEE
Confidence 984 4554
No 17
>3i45_A Twin-arginine translocation pathway signal protei; structural genomics; 1.36A {Rhodospirillum rubrum}
Probab=100.00 E-value=5.7e-39 Score=360.86 Aligned_cols=357 Identities=14% Similarity=0.110 Sum_probs=304.1
Q ss_pred CeeEEEEEEeeCCC--cchhHHHHHHHHHHHHHhcCCCCCCCCEEEEEEccCCCChHHHHHHHHHHHhc-CcEEEEcCCC
Q 002309 29 PAVVNVGALFTLDS--TIGRVAKIAIEEAVKDVNSNSSILHGTKLNITMQSSNCSGFIGMVEALRFMET-DIVAIIGPQC 105 (938)
Q Consensus 29 ~~~i~IG~i~~~~~--~~g~~~~~a~~~Av~~iN~~~~il~g~~l~~~~~D~~~~~~~a~~~a~~li~~-~V~aviGp~~ 105 (938)
.++|+||+++|++. .+|.....|+++|+++||++||+++|++|+++++|+++++..+.+.+++|+.+ +|.+||||.+
T Consensus 3 ~~~i~IG~~~p~sg~~~~g~~~~~g~~~a~~~iN~~ggi~Gg~~i~l~~~D~~~~~~~~~~~~~~li~~~~v~aiiG~~~ 82 (387)
T 3i45_A 3 LEAIRIGEINSYSQIPAFTLPYRNGWQLAVEQINAAGGLLGGRPLEVISRDDGGDPGKAVTAAQELLTRHGVHALAGTFL 82 (387)
T ss_dssp CCCEEEEEEECTTTCHHHHHHHHHHHHHHHHHHHHTTCBTTTBCEEEEEEECTTCHHHHHHHHHHHHHHHCCSEEEECCS
T ss_pred CCCEEEEEeecCCCchhhhHHHHHHHHHHHHHHHhcCCCCCCcceEEEEecCCCCHHHHHHHHHHHHHhcCCEEEECCcc
Confidence 46899999999986 34777899999999999999999744999999999999999999999999986 9999999999
Q ss_pred hhHHHHHHHhhccCCccEEEcccCCCCCCC-CCCCceEEecCCchHHHHHHHHHHHhcCCcEEEEEEEcCccccchHHHH
Q 002309 106 STVAHIVSYVSNELQVPLLSFGVTDPTLSS-LQYPFFVRTTQSDSYQMTAVAEMVSYYGWNAVSVIFVDNEYGRNGVSAL 184 (938)
Q Consensus 106 s~~~~~va~~~~~~~iP~Is~~~~~~~l~~-~~~p~~~r~~ps~~~~~~ai~~~l~~~~w~~vaii~~d~~~g~~~~~~l 184 (938)
|..+.+++++++..+||+|++.++++.++. ..+||+||+.|++..++.++++++.+++|++|++||+|++||+...+.+
T Consensus 83 s~~~~a~~~~~~~~~ip~i~~~~~~~~l~~~~~~~~~f~~~~~~~~~~~~~~~~l~~~g~~~vaii~~~~~~g~~~~~~~ 162 (387)
T 3i45_A 83 SHVGLAVSDFARQRKVLFMASEPLTDALTWEKGNRYTYRLRPSTYMQAAMLAAEAAKLPITRWATIAPNYEYGQSAVARF 162 (387)
T ss_dssp HHHHHHHHHHHHHHTCCEEECSCCCGGGTTTTCCTTEEECSCCHHHHHHHHHHHHTTSSCCEEEEECCSSHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHcCceEEecCCCchhhhhccCCCCEEEeCCChHHHHHHHHHHHHHcCCCeEEEEeCCchHhHHHHHHH
Confidence 999999999999999999999888888875 5789999999999999999999999999999999999999999999999
Q ss_pred HHHHhhc--ceEEEEEeecCCCCCCChhhHHHHHHHHhcCCceEEEEEeChhhHHHHHHHHHHcCCCCCCeEEEEeCcch
Q 002309 185 NDKLAER--RCRISYKSGIPPESGVNTGYVMDLLVKVALMESRVIVLHVSPSLGFQVFSVAKYLGMMGNGYVWIATDWLA 262 (938)
Q Consensus 185 ~~~l~~~--g~~v~~~~~~~~~~~~~~~d~~~~l~~lk~~~~~viv~~~~~~~~~~~l~~a~~~g~~~~~~~wi~~~~~~ 262 (938)
++.+++. |++++....++.+ ..|+.+.++++++.++++|++.+...++..++++++++|+... +++.+....
T Consensus 163 ~~~l~~~~~g~~vv~~~~~~~~----~~d~~~~~~~i~~~~~d~v~~~~~~~~~~~~~~~~~~~g~~~~--~~i~~~~~~ 236 (387)
T 3i45_A 163 KELLLAARPEVTFVAEQWPALY----KLDAGPTVQALQQAEPEGLFNVLFGADLPKFVREGRVRGLFAG--RQVVSMLTG 236 (387)
T ss_dssp HHHHHHHCTTCEEEEEECCCTT----CCCHHHHHHHHHHTCCSEEEECCCTTHHHHHHHHHHHHTSSTT--CEEEEEEEE
T ss_pred HHHHHHhCCCcEEEeeecCCCC----CcCHHHHHHHHHhCCCCEEEEcCccHHHHHHHHHHHHcCCCCC--CeEEeecCC
Confidence 9999998 8999888777765 6689999999999999999999999999999999999998543 334332221
Q ss_pred --hcccCCCCChhhhhccccEEEEEE-cC-CCChhhHHHHHHHhhhcCCCCCCCchhhHHhHHHHHHHHHHHHHHhcCCc
Q 002309 263 --YMLDSASLPSETLESMQGVLVLRQ-HI-PESDRKKNFLSRWKNLTGGSLGMNSYGLYAYDSVWLLAHAIESFFNQGGK 338 (938)
Q Consensus 263 --~~~~~~~~~~~~~~~~~g~~~~~~-~~-~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~YDav~~~a~Al~~~~~~~~~ 338 (938)
..+. ....+..+|++.... +. ++.+..++|.++|++++ +..|+.+++.+|||++++++|++++..
T Consensus 237 ~~~~~~-----~~~~~~~~g~~~~~~~~~~~~~~~~~~f~~~~~~~~--~~~p~~~~~~~Yda~~~~a~Al~~ag~---- 305 (387)
T 3i45_A 237 EPEYLN-----PLKDEAPEGWIVTGYPWYDIDTAPHRAFVEAYRARW--KEDPFVGSLVGYNTLTAMAVAFEKAGG---- 305 (387)
T ss_dssp SHHHHG-----GGGGGCCSSCEEEECCGGGCCCHHHHHHHHHHHHHH--SSCCCHHHHHHHHHHHHHHHHHHHHTS----
T ss_pred ChHHHH-----HhhhhccCceEEecccccCCCCHHHHHHHHHHHHHH--CCCCCcHHHHHHHHHHHHHHHHHHhCC----
Confidence 1111 112234677766532 32 57888999999999999 567888999999999999999999621
Q ss_pred ccccCCccccccCCCccccCCccccCchHHHHHHHhcCcccccccceEEcCCCCCccceEEEEEee-ccceEEEEEeeCC
Q 002309 339 ISFSNDSRLKTMEGGNLHLGAMSIFDDGMLLLGNILQSNLVGLTGPLKFNSDRSLIHAAYDIINVI-GTGFRMIGYWSNY 417 (938)
Q Consensus 339 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~l~~~~f~G~tG~v~F~~~g~~~~~~~~I~~~~-~~~~~~Vg~w~~~ 417 (938)
.+++.+.++|++++|+|++|+++|++++.+......|.+++ +++...++.|...
T Consensus 306 -------------------------~~~~~v~~al~~~~~~g~~G~i~f~~~~~~~~~~~~i~~~~~~~g~~~i~~w~~~ 360 (387)
T 3i45_A 306 -------------------------TESETLVETLKDMAFSTPMGPLSFRASDHQSTMGAWVGRTALRDGKGVMVDWRYV 360 (387)
T ss_dssp -------------------------CCHHHHHHHTTTCEEEETTEEEEBCTTTCBBCCCEEEEEEEEETTEEEEEEEEEE
T ss_pred -------------------------CCHHHHHHHHhcCCCcCCCCCeEEcCCCCccccceeEEEEEeeCCceeEEeeEEe
Confidence 14899999999999999999999997554467777888876 5677999999988
Q ss_pred CCCccCCCcc
Q 002309 418 SGLSKEPPET 427 (938)
Q Consensus 418 ~g~~~~~~~~ 427 (938)
.|..+.++..
T Consensus 361 ~~~~~~p~~~ 370 (387)
T 3i45_A 361 DGGSVLPPPE 370 (387)
T ss_dssp CGGGGSCCHH
T ss_pred CchhcCCCHH
Confidence 8876665543
No 18
>3h5l_A Putative branched-chain amino acid ABC transporter; structural genomics, PSI-2, protein structure initiative; 1.70A {Ruegeria pomeroyi}
Probab=100.00 E-value=5e-39 Score=365.31 Aligned_cols=345 Identities=13% Similarity=0.047 Sum_probs=285.1
Q ss_pred CCCeeEEEEEEeeCCC---cchhHHHHHHHHHHHHHhcCCCCCCCCEEEEEEccCC-CChHHHHHHHHHHHh-cCcEEEE
Q 002309 27 ARPAVVNVGALFTLDS---TIGRVAKIAIEEAVKDVNSNSSILHGTKLNITMQSSN-CSGFIGMVEALRFME-TDIVAII 101 (938)
Q Consensus 27 ~~~~~i~IG~i~~~~~---~~g~~~~~a~~~Av~~iN~~~~il~g~~l~~~~~D~~-~~~~~a~~~a~~li~-~~V~avi 101 (938)
...++|+||+++|++. ..|.....|+++|+++||++||++ |++|+++++|++ +++..++..+++|+. ++|.+||
T Consensus 10 ~~~~~i~IG~~~plsG~~a~~g~~~~~g~~lA~~~iN~~ggi~-G~~i~l~~~D~~~~~~~~a~~~a~~li~~~~v~aii 88 (419)
T 3h5l_A 10 QSSDPVVIGCPAPLTGIVAADGIEFQRGIQMAADEINAVGGIL-GRPIELVFADTQSKGVDVVIQSAQRLIDRDNASALI 88 (419)
T ss_dssp ---CCEEEEEEECCSSTTHHHHHHHHHHHHHHHHHHHTTTSBT-TBCEEEEEEECTTCCHHHHHHHHHHHHHTTCCSEEE
T ss_pred ccCCCEEEEEeecCCCcccccCHHHHHHHHHHHHHHHhcCCcC-ceEEEEEEccCCCCCHHHHHHHHHHHhhhcCCeEEE
Confidence 4567899999999985 448889999999999999999996 999999999998 699999999999998 5999999
Q ss_pred cCCChhHHHHHHHhhccCCccEEEcccCCCCCC-----C-CCCCceEEecCCchHHHHHHHHHHHhc--------CCcEE
Q 002309 102 GPQCSTVAHIVSYVSNELQVPLLSFGVTDPTLS-----S-LQYPFFVRTTQSDSYQMTAVAEMVSYY--------GWNAV 167 (938)
Q Consensus 102 Gp~~s~~~~~va~~~~~~~iP~Is~~~~~~~l~-----~-~~~p~~~r~~ps~~~~~~ai~~~l~~~--------~w~~v 167 (938)
||.+|..+.+++++++.++||+|+++ +++.++ + ..|+|+||+.|++..++.+++++++++ +|++|
T Consensus 89 G~~~s~~~~a~~~~~~~~~ip~i~~~-~~~~~~~~~~~~~~~~~~~f~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 167 (419)
T 3h5l_A 89 AGYNLENGTALHDVAADAGVIAMHAN-TVAVHDEMVKSDPDRYWGTFQYDPPETLYGGGFLKFLKDIEDNGEFSRPNNKI 167 (419)
T ss_dssp CSCCSSCSCHHHHHHHHHTCEEEECC-CCHHHHHHHHHCTTTCTTEEESSCCTHHHHHHHHHHHHHHHHTTSCCCSSSEE
T ss_pred ccccchhHHHhHHHHHHcCCeEEEcC-cchhhhhhhhcCcccCceEEEeCCchHHHHHHHHHHHHHHHhhccccCCCCEE
Confidence 99999999999999999999999964 333322 2 468999999999999999999999876 89999
Q ss_pred EEEEEcCccccchHHHHHHHHhhcceEEEEEeecCCCCCCChhhHHHHHHHHhcCCceEEEEEeC-hhhHHHHHHHHHHc
Q 002309 168 SVIFVDNEYGRNGVSALNDKLAERRCRISYKSGIPPESGVNTGYVMDLLVKVALMESRVIVLHVS-PSLGFQVFSVAKYL 246 (938)
Q Consensus 168 aii~~d~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~lk~~~~~viv~~~~-~~~~~~~l~~a~~~ 246 (938)
++||+|++||+...+.+++.+++.|++|+....++.+ ..|+..++++|++.++|+|++.+. +.++..+++++++.
T Consensus 168 ail~~~~~~g~~~~~~~~~~~~~~g~~vv~~~~~~~~----~~d~~~~l~~i~~~~~d~v~~~~~~~~~~~~~~~~~~~~ 243 (419)
T 3h5l_A 168 AIITGPGIYSVNIANAIRDGAGEYGYDVSLFETVAIP----VSDWGPTLAKLRADPPAVIVVTHFYPQDQALFMNQFMTD 243 (419)
T ss_dssp EEEECSSHHHHHHHHHHHHHGGGGTCEEEEEEECCSS----CSCCHHHHHHHHHSCCSEEEECCCCHHHHHHHHHHHTTS
T ss_pred EEEEcCcchhHHHHHHHHHHHHHcCCeEEEEecCCCC----CccHHHHHHHHHhcCCCEEEEccccCchHHHHHHHHHHc
Confidence 9999999999999999999999999999998888876 678999999999999999999865 57899999999999
Q ss_pred CCCCCCeEEEEeCcchhcccCCCCChhhhhccccEEEEEEc-CCCChhhHHHHHHHhhhcCCCCCCC-chhhHHhHHHHH
Q 002309 247 GMMGNGYVWIATDWLAYMLDSASLPSETLESMQGVLVLRQH-IPESDRKKNFLSRWKNLTGGSLGMN-SYGLYAYDSVWL 324 (938)
Q Consensus 247 g~~~~~~~wi~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~-~~~~~~~~~f~~~~~~~~~~~~~~~-~~~~~~YDav~~ 324 (938)
|+ ...|+.++++...... ....+..+|++....+ .+..+..++|.++|++++ +..+. .+++.+|||+++
T Consensus 244 g~---~~~~~~~~~~~~~~~~----~~~g~~~~G~~~~~~~~~~~~~~~~~f~~~~~~~~--g~~p~~~~a~~~Yda~~~ 314 (419)
T 3h5l_A 244 PT---NSLVYLQYGASLAAFR----DIAGDNSVGVTYATVLGTLQDEMGDAFAKAYKERY--GDLSSTASGCQTYSALYA 314 (419)
T ss_dssp CC---SCEEEECSGGGSHHHH----HHHGGGGTTCEEEESSCCCSSHHHHHHHHHHHHHH--CTTSCHHHHHHHHHHHHH
T ss_pred CC---CceEEecCCCCcHHHH----HhhhhhcCceEEeecCCCCCCHHHHHHHHHHHHHh--CCCCCcchhHHHHHHHHH
Confidence 98 3456776655432111 2233567787766543 346788999999999999 44454 689999999999
Q ss_pred HHHHHHHHHhcCCcccccCCccccccCCCccccCCccccCchHHHHHHHhcCcccccccceEEcCCCCCc----------
Q 002309 325 LAHAIESFFNQGGKISFSNDSRLKTMEGGNLHLGAMSIFDDGMLLLGNILQSNLVGLTGPLKFNSDRSLI---------- 394 (938)
Q Consensus 325 ~a~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~l~~~~f~G~tG~v~F~~~g~~~---------- 394 (938)
+++|++++..... .+...++..+.++|++++|+|++|+++||++|+..
T Consensus 315 ~~~a~~~a~~~~~----------------------~g~~~~~~~l~~al~~~~~~g~~G~i~f~~~g~~~~~~~~~~~~~ 372 (419)
T 3h5l_A 315 YSIAAALAGGPGA----------------------PYDDVQNKAVADRLRSLIFRGPVGTMRFHADTQSAWSYPTETNDP 372 (419)
T ss_dssp HHHHHHHTTSCCC----------------------TTCHHHHHHHHHHHHHCEEEETTEEEEBCTTTCBBCEETTTCSCT
T ss_pred HHHHHHHhcCCcc----------------------CCCccCHHHHHHHHHhCCcccCceEEEECCCCCccccccCccCCc
Confidence 9999998643110 11122589999999999999999999999999832
Q ss_pred --cceEEEEEeeccce
Q 002309 395 --HAAYDIINVIGTGF 408 (938)
Q Consensus 395 --~~~~~I~~~~~~~~ 408 (938)
...+.|+|++++++
T Consensus 373 ~~~~~~~i~q~q~g~~ 388 (419)
T 3h5l_A 373 SLGMPHIFSQIFDKAE 388 (419)
T ss_dssp TSSEECEEEECCCTTS
T ss_pred cccCCceEEEeeCCce
Confidence 23456888888777
No 19
>4f06_A Extracellular ligand-binding receptor; PSI-biology, MCSG, midwest center for structural genomics, transporter; HET: MSE PHB; 1.30A {Rhodopseudomonas palustris} PDB: 4evs_A*
Probab=100.00 E-value=3.9e-38 Score=351.35 Aligned_cols=347 Identities=15% Similarity=0.182 Sum_probs=292.5
Q ss_pred CCeeEEEEEEeeCC---CcchhHHHHHHHHHHHHHhcCCCCCCCCEEEEEEccCCC-ChHHHHHHHHHHHhc-CcEEEEc
Q 002309 28 RPAVVNVGALFTLD---STIGRVAKIAIEEAVKDVNSNSSILHGTKLNITMQSSNC-SGFIGMVEALRFMET-DIVAIIG 102 (938)
Q Consensus 28 ~~~~i~IG~i~~~~---~~~g~~~~~a~~~Av~~iN~~~~il~g~~l~~~~~D~~~-~~~~a~~~a~~li~~-~V~aviG 102 (938)
..++|+||+++|+| +.+|...+.|+++|++++| +|+ .|++|+++++|+++ +|..++..+.+|+.+ +|.+|||
T Consensus 2 ~Ad~IkIG~~~plSG~~a~~G~~~~~g~~la~~~~n--ggi-~G~~ielv~~D~~~~~p~~a~~~a~~Li~~d~V~aiiG 78 (371)
T 4f06_A 2 NADTIKVGVIGTMSGPYALFGKNYKMGIDAWVAEHG--NKV-AGHTVEFVYRDEVSPNPAQSKALAQELIVKEKVQYLAG 78 (371)
T ss_dssp --CEEEEEEEECCSSTTHHHHHHHHHHHHHHHHHHC--SEE-TTEEEEEEEEECCSSCHHHHHHHHHHHHHTSCCSEEEE
T ss_pred CCCcEEEEEEeCCcCchHHhHHHHHHHHHHHHHHhC--CCC-CCEEEEEEEEcCCCCCHHHHHHHHHHHHhcCCCEEEEe
Confidence 35789999999998 4568899999999999998 677 59999999999986 899999999999976 8999999
Q ss_pred CCChhHHHHHHHhhccCCccEEEcccCCCCCCCCCCCceEEecCCchHHHHHHHHHHHhcCCcEEEEEEEcCccccchHH
Q 002309 103 PQCSTVAHIVSYVSNELQVPLLSFGVTDPTLSSLQYPFFVRTTQSDSYQMTAVAEMVSYYGWNAVSVIFVDNEYGRNGVS 182 (938)
Q Consensus 103 p~~s~~~~~va~~~~~~~iP~Is~~~~~~~l~~~~~p~~~r~~ps~~~~~~ai~~~l~~~~w~~vaii~~d~~~g~~~~~ 182 (938)
|.+|..+.+++++++..+||+|++.++++.++.. .||+||+.|++..++.+++++++..+|++|++|++|++||....+
T Consensus 79 ~~~S~~~~a~~~~~~~~~vp~i~~~a~~~~~~~~-~~~~fr~~~~~~~~~~~~~~~~~~~g~k~vaii~~~~~~g~~~~~ 157 (371)
T 4f06_A 79 LYFTPNAMAVAPLLQEAKVPMVVMNAATSSITEK-SPYIVRTSFTMFQNTVPAAKVAKQKGATKVAIAVSDYGPGIDAET 157 (371)
T ss_dssp CCSHHHHHHHGGGHHHHTCCEEESSCCCGGGGGG-CTTEEESSCCHHHHHHHHHHHHHHTTCCEEEEEEESSHHHHHHHH
T ss_pred cccccchHHHHHHHHhhcCCccccccccchhccc-CCcceecccchhhhhhhhhhhhhhcCceEEEEEcCCcccchhHHH
Confidence 9999999999999999999999999988888753 599999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhcceEEEEEeecCCCCCCChhhHHHHHHHHhcCCceEEEEEeC-hhhHHHHHHHHHHcCCCCCCeEEEEeCcc
Q 002309 183 ALNDKLAERRCRISYKSGIPPESGVNTGYVMDLLVKVALMESRVIVLHVS-PSLGFQVFSVAKYLGMMGNGYVWIATDWL 261 (938)
Q Consensus 183 ~l~~~l~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~lk~~~~~viv~~~~-~~~~~~~l~~a~~~g~~~~~~~wi~~~~~ 261 (938)
.+++.+++.|++|+....++.+ +.|+.+++.+|+++++|+|++.+. +..+..+++++++.|+...++.++.+...
T Consensus 158 ~~~~~~~~~g~~vv~~~~~~~~----~~d~~~~l~~i~~~~pd~v~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 233 (371)
T 4f06_A 158 AFKKTFEAEGGKVVEAVRMPLS----TTDFGPIMQRIKNSGADMIFTFLPAGPPTLGFVKAYIDNGLKAGGVKLMSTGDV 233 (371)
T ss_dssp HHHHHHHHTTCEEEEEEEECTT----CCCCHHHHHHHHHHTCSEEEEECCTTHHHHHHHHHHHHTTTTTTTCEEEEEGGG
T ss_pred HHHHHHHhcCCceEEEEecCcc----cccHHHHHHHHHhcCCCEEEEEeccCchhhHHHHHHHHhhhhccCcEEEEeccc
Confidence 9999999999999999999877 779999999999999999988765 46788899999999997777777766543
Q ss_pred hhcccCCCCChhhhhccccEEEEEEcCC--CChhhHHHHHHHhhhcCCCCCCCchhhHHhHHHHHHHHHHHHHHhcCCcc
Q 002309 262 AYMLDSASLPSETLESMQGVLVLRQHIP--ESDRKKNFLSRWKNLTGGSLGMNSYGLYAYDSVWLLAHAIESFFNQGGKI 339 (938)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~--~~~~~~~f~~~~~~~~~~~~~~~~~~~~~YDav~~~a~Al~~~~~~~~~~ 339 (938)
...... ....+...|++...++.+ ++|..++|.++|+++++....++.++..+|||++++++|+++. +++
T Consensus 234 ~~~~~~----~~~~~~~~g~~~~~~~~~~~~~p~~~~f~~~~~~~~~~~~~~~~~a~~~Yda~~~l~~Ai~~~---ag~- 305 (371)
T 4f06_A 234 VTEPDL----PNIGEAGLGILSTYHYAVSHDSPENKAFLALLQKGGAKLDEVTMTSVAAYDGARLIYKMIEAT---SGK- 305 (371)
T ss_dssp GCGGGH----HHHCGGGTTCEEEESCCTTCCSHHHHHHHHHHHHTTCCGGGCCHHHHHHHHHHHHHHHHHHHT---TTS-
T ss_pred CCHHHH----HhcccccCceEEeeccccCCCChhHHHHHHHHHHhcCCCCCccchHHHHHHHHHHHHHHHHHh---cCC-
Confidence 322111 233456778887776654 5678899999999988322457788999999999999999873 111
Q ss_pred cccCCccccccCCCccccCCccccCchHHHHHHHhcCcccccccceEEcCCCCCccceEEEEEee--ccce--EEEEEe
Q 002309 340 SFSNDSRLKTMEGGNLHLGAMSIFDDGMLLLGNILQSNLVGLTGPLKFNSDRSLIHAAYDIINVI--GTGF--RMIGYW 414 (938)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~l~~~~f~G~tG~v~F~~~g~~~~~~~~I~~~~--~~~~--~~Vg~w 414 (938)
.+++.+.++|++++|.|++|+++||++++.....+.|.+++ ++++ +.++.+
T Consensus 306 ------------------------~d~~~v~~al~~~~~~~~~G~i~fd~~~~~~~~~~~i~~v~~~dGk~v~~~~~~~ 360 (371)
T 4f06_A 306 ------------------------SDPDKAIAAVKGMKWVSPRGEVSIDPETRHITQNVYLREVEKVDGKLINRELETF 360 (371)
T ss_dssp ------------------------CCHHHHHHHHTTCEEEETTEEEEECTTTCBEEEEEEEEEEEEETTEEEEEEEEEE
T ss_pred ------------------------CCHHHHHHHHhCCCeeCCcEEEEEcCCCCcccCCEEEEEEEecCCEEEEEEEEEE
Confidence 14899999999999999999999998876566777888887 4554 334444
No 20
>3ipc_A ABC transporter, substrate binding protein (amino; venus flytrap domain, transport protein; 1.30A {Agrobacterium tumefaciens} PDB: 3ip5_A 3ip6_A 3ip7_A 3ip9_A 3ipa_A
Probab=100.00 E-value=6.5e-38 Score=348.17 Aligned_cols=344 Identities=16% Similarity=0.149 Sum_probs=297.2
Q ss_pred eeEEEEEEeeCCC---cchhHHHHHHHHHHHHHhcCCCCCCCCEEEEEEccCCCChHHHHHHHHHHHhcCcEEEEcCCCh
Q 002309 30 AVVNVGALFTLDS---TIGRVAKIAIEEAVKDVNSNSSILHGTKLNITMQSSNCSGFIGMVEALRFMETDIVAIIGPQCS 106 (938)
Q Consensus 30 ~~i~IG~i~~~~~---~~g~~~~~a~~~Av~~iN~~~~il~g~~l~~~~~D~~~~~~~a~~~a~~li~~~V~aviGp~~s 106 (938)
++|+||+++|++. ..|.....|+++|++++|++||+ +|+++++++.|+++++..+.+.+++|++++|.+||||.++
T Consensus 1 ~~i~IG~~~p~sg~~~~~g~~~~~g~~~a~~~iN~~ggi-~G~~~~l~~~d~~~~~~~~~~~~~~l~~~~v~~iig~~~s 79 (356)
T 3ipc_A 1 MDVVIAVGAPLTGPNAAFGAQIQKGAEQAAKDINAAGGI-NGEQIKIVLGDDVSDPKQGISVANKFVADGVKFVVGHANS 79 (356)
T ss_dssp CCEEEEEEECCSSTTHHHHHHHHHHHHHHHHHHHHTTCB-TTBCEEEEEEECTTCHHHHHHHHHHHHHTTCCEEEECSSH
T ss_pred CeEEEEEeeCCCCcchhhCHHHHHHHHHHHHHHHhcCCC-CCeEEEEEEecCCCCHHHHHHHHHHHHHCCCcEEEcCCCc
Confidence 3799999999984 46788999999999999999999 6999999999999999999999999999999999999999
Q ss_pred hHHHHHHHhhccCCccEEEcccCCCCCCCCCCCceEEecCCchHHHHHHHHHH-HhcCCcEEEEEEEcCccccchHHHHH
Q 002309 107 TVAHIVSYVSNELQVPLLSFGVTDPTLSSLQYPFFVRTTQSDSYQMTAVAEMV-SYYGWNAVSVIFVDNEYGRNGVSALN 185 (938)
Q Consensus 107 ~~~~~va~~~~~~~iP~Is~~~~~~~l~~~~~p~~~r~~ps~~~~~~ai~~~l-~~~~w~~vaii~~d~~~g~~~~~~l~ 185 (938)
..+.++++++...+||+|++.++++.+++..+|++||+.|++..++.++++++ +++||++|++|+.++++|+...+.++
T Consensus 80 ~~~~~~~~~~~~~~ip~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~iaii~~~~~~~~~~~~~~~ 159 (356)
T 3ipc_A 80 GVSIPASEVYAENGILEITPAATNPVFTERGLWNTFRTCGRDDQQGGIAGKYLADHFKDAKVAIIHDKTPYGQGLADETK 159 (356)
T ss_dssp HHHHHHHHHHHTTTCEEEESSCCCGGGGSSCCTTEEESSCCHHHHHHHHHHHHHHHCTTCCEEEEECSSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCeEEecCCCCcHhhcCCCCcEEEecCChHHHHHHHHHHHHHhcCCCEEEEEeCCChHHHHHHHHHH
Confidence 99999999999999999999999888888778999999999999999999965 56799999999999999999999999
Q ss_pred HHHhhcceEEEEEeecCCCCCCChhhHHHHHHHHhcCCceEEEEEeChhhHHHHHHHHHHcCCCCCCeEEEEeCcchhcc
Q 002309 186 DKLAERRCRISYKSGIPPESGVNTGYVMDLLVKVALMESRVIVLHVSPSLGFQVFSVAKYLGMMGNGYVWIATDWLAYML 265 (938)
Q Consensus 186 ~~l~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~lk~~~~~viv~~~~~~~~~~~l~~a~~~g~~~~~~~wi~~~~~~~~~ 265 (938)
+++++.|++++....++.+ ..++...+++++..++++|++++....+..+++++++.|+..+ |+.++++....
T Consensus 160 ~~l~~~g~~v~~~~~~~~~----~~d~~~~~~~l~~~~~d~v~~~~~~~~a~~~~~~~~~~g~~~~---~~~~~~~~~~~ 232 (356)
T 3ipc_A 160 KAANAAGVTEVMYEGVNVG----DKDFSALISKMKEAGVSIIYWGGLHTEAGLIIRQAADQGLKAK---LVSGDGIVSNE 232 (356)
T ss_dssp HHHHHTTCCCSEEEECCTT----CCCCHHHHHHHHHTTCCEEEEESCHHHHHHHHHHHHHHTCCCE---EEECGGGCSHH
T ss_pred HHHHHcCCEEEEEEeeCCC----CCCHHHHHHHHHhcCCCEEEEccCchHHHHHHHHHHHCCCCCc---EEEeccccCHH
Confidence 9999999998777777755 6688899999999999999999999999999999999998653 67765543321
Q ss_pred cCCCCChhhhhccccEEEEEEcCC-CChhhHHHHHHHhhhcCCCCCCCchhhHHhHHHHHHHHHHHHHHhcCCcccccCC
Q 002309 266 DSASLPSETLESMQGVLVLRQHIP-ESDRKKNFLSRWKNLTGGSLGMNSYGLYAYDSVWLLAHAIESFFNQGGKISFSND 344 (938)
Q Consensus 266 ~~~~~~~~~~~~~~g~~~~~~~~~-~~~~~~~f~~~~~~~~~~~~~~~~~~~~~YDav~~~a~Al~~~~~~~~~~~~~~~ 344 (938)
.. .......+|++...++.+ ..+..++|.++|+++. ..|+.+++.+|||++++++|++++..
T Consensus 233 ~~----~~~g~~~~g~~~~~~~~~~~~~~~~~f~~~~~~~~---~~p~~~~~~~yda~~~~~~al~~ag~---------- 295 (356)
T 3ipc_A 233 LA----SIAGDAVEGTLNTFGPDPTLRPENKELVEKFKAAG---FNPEAYTLYSYAAMQAIAGAAKAAGS---------- 295 (356)
T ss_dssp HH----HHHGGGGTTCEEEESCCGGGCGGGHHHHHHHHHTT---CCCCTTHHHHHHHHHHHHHHHHHHTC----------
T ss_pred HH----HHhhHHhCCEEEEecCCCCCChhHHHHHHHHHHcC---CCcchhHHHHHHHHHHHHHHHHHhCC----------
Confidence 11 122345788877766654 4678899999999872 45777999999999999999999621
Q ss_pred ccccccCCCccccCCccccCchHHHHHHHhcCcccccccceEEcCCCCCccceEEEEEeec---cceEEEEEeeCC
Q 002309 345 SRLKTMEGGNLHLGAMSIFDDGMLLLGNILQSNLVGLTGPLKFNSDRSLIHAAYDIINVIG---TGFRMIGYWSNY 417 (938)
Q Consensus 345 ~~~~~~~~~~~~~~~~~~~~~g~~l~~~l~~~~f~G~tG~v~F~~~g~~~~~~~~I~~~~~---~~~~~Vg~w~~~ 417 (938)
.+++.+.++|++.+|+|++|+++||++|++....+.|+++++ ++|+.+..|.+.
T Consensus 296 -------------------~~~~~~~~~l~~~~~~g~~G~~~f~~~g~~~~~~~~i~~~~~~~~G~~~~~~~~~~~ 352 (356)
T 3ipc_A 296 -------------------VEPEKVAEALKKGSFPTALGEISFDEKGDPKLPGYVMYEWKKGPDGKFTYIQQGSHH 352 (356)
T ss_dssp -------------------CCHHHHHHHHTTCCBCCTTSSBCBCTTSCBCCCCCEEEEEEECTTSSEEEEEC----
T ss_pred -------------------CCHHHHHHHHHhCCCCCcceeeEECCCCCccCCCeEEEEEEECCCCcEEEEeccccc
Confidence 148999999999999999999999999998778899999995 899999998764
No 21
>3td9_A Branched chain amino acid ABC transporter, peripl amino acid-binding protein; leucine binding, structural genomics; HET: MSE PHE; 1.90A {Thermotoga maritima}
Probab=100.00 E-value=1.9e-37 Score=345.74 Aligned_cols=343 Identities=17% Similarity=0.180 Sum_probs=296.2
Q ss_pred CCCeeEEEEEEeeCCC---cchhHHHHHHHHHHHHHhcCCCCCCCCEEEEEEccCCCChHHHHHHHHHHHhc-CcEEEEc
Q 002309 27 ARPAVVNVGALFTLDS---TIGRVAKIAIEEAVKDVNSNSSILHGTKLNITMQSSNCSGFIGMVEALRFMET-DIVAIIG 102 (938)
Q Consensus 27 ~~~~~i~IG~i~~~~~---~~g~~~~~a~~~Av~~iN~~~~il~g~~l~~~~~D~~~~~~~a~~~a~~li~~-~V~aviG 102 (938)
..+.+++||+++|++. ..|.....|+++|++++|+ + .|++++++++|+++++..+.+.+.+|+.+ +|.+|||
T Consensus 12 ~~~~~~~iG~~~plsG~~a~~g~~~~~g~~~a~~~in~---i-~G~~i~l~~~D~~~~~~~~~~~~~~l~~~~~v~~iiG 87 (366)
T 3td9_A 12 HMRKVVKIAVILPMTGGISAFGRMVWEGIQIAHEEKPT---V-LGEEVELVLLDTRSEKTEAANAAARAIDKEKVLAIIG 87 (366)
T ss_dssp ----CEEEEEEECCSSTTHHHHHHHHHHHHHHHHHCCE---E-TTEEEEEEEEECTTCHHHHHHHHHHHHHTSCCSEEEE
T ss_pred hhcceEEEEEEECCcCcchhcCHHHHHHHHHHHHHhhh---c-CCeEEEEEEecCCCCHHHHHHHHHHHhccCCeEEEEc
Confidence 3456899999999994 4578899999999999999 5 49999999999999999999999999988 5999999
Q ss_pred CCChhHHHHHHHhhccCCccEEEcccCCCCCCCCCCCceEEecCCchHHHHHHHHHH-HhcCCcEEEEEEE-cCccccch
Q 002309 103 PQCSTVAHIVSYVSNELQVPLLSFGVTDPTLSSLQYPFFVRTTQSDSYQMTAVAEMV-SYYGWNAVSVIFV-DNEYGRNG 180 (938)
Q Consensus 103 p~~s~~~~~va~~~~~~~iP~Is~~~~~~~l~~~~~p~~~r~~ps~~~~~~ai~~~l-~~~~w~~vaii~~-d~~~g~~~ 180 (938)
|.+|..+.+++++++..+||+|++.++++.+++ .+|++||+.|++..++.++++++ +++||++|++||. +++||...
T Consensus 88 ~~~s~~~~~~~~~~~~~~iP~i~~~~~~~~~~~-~~~~~f~~~~~~~~~~~~~~~~l~~~~g~~~iaii~~~~~~~~~~~ 166 (366)
T 3td9_A 88 EVASAHSLAIAPIAEENKVPMVTPASTNPLVTQ-GRKFVSRVCFIDPFQGAAMAVFAYKNLGAKRVVVFTDVEQDYSVGL 166 (366)
T ss_dssp CSSHHHHHHHHHHHHHTTCCEEESSCCCGGGTT-TCSSEEESSCCHHHHHHHHHHHHHHTSCCCEEEEEEETTCHHHHHH
T ss_pred cCCchhHHHHHHHHHhCCCeEEecCCCCccccC-CCCCEEEEeCCcHHHHHHHHHHHHHhcCCcEEEEEEeCCCcHHHHH
Confidence 999999999999999999999999888877764 57999999999999999999998 6689999999986 78899999
Q ss_pred HHHHHHHHhhcceEEEEEeecCCCCCCChhhHHHHHHHHhcCCceEEEEEeChhhHHHHHHHHHHcCCCCCCeEEEEeCc
Q 002309 181 VSALNDKLAERRCRISYKSGIPPESGVNTGYVMDLLVKVALMESRVIVLHVSPSLGFQVFSVAKYLGMMGNGYVWIATDW 260 (938)
Q Consensus 181 ~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~lk~~~~~viv~~~~~~~~~~~l~~a~~~g~~~~~~~wi~~~~ 260 (938)
.+.+++++++.|++++... ++.+ ..++...+++++..++++|++.+....+..+++++++.|+.. .|+.+++
T Consensus 167 ~~~~~~~~~~~G~~v~~~~-~~~~----~~d~~~~~~~l~~~~~d~v~~~~~~~~a~~~~~~~~~~g~~~---~~~~~~~ 238 (366)
T 3td9_A 167 SNFFINKFTELGGQVKRVF-FRSG----DQDFSAQLSVAMSFNPDAIYITGYYPEIALISRQARQLGFTG---YILAGDG 238 (366)
T ss_dssp HHHHHHHHHHTTCEEEEEE-ECTT----CCCCHHHHHHHHHTCCSEEEECSCHHHHHHHHHHHHHTTCCS---EEEECGG
T ss_pred HHHHHHHHHHCCCEEEEEE-eCCC----CccHHHHHHHHHhcCCCEEEEccchhHHHHHHHHHHHcCCCc---eEEeeCC
Confidence 9999999999999998877 7765 678889999999999999999999999999999999999854 3677655
Q ss_pred chhcccCCCCChhhhhccccEEEEEEcCCC---ChhhHHHHHHHhhhcCCCCCCCchhhHHhHHHHHHHHHHHHHHhcCC
Q 002309 261 LAYMLDSASLPSETLESMQGVLVLRQHIPE---SDRKKNFLSRWKNLTGGSLGMNSYGLYAYDSVWLLAHAIESFFNQGG 337 (938)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~---~~~~~~f~~~~~~~~~~~~~~~~~~~~~YDav~~~a~Al~~~~~~~~ 337 (938)
+...... ....+..+|++....+.|. .+..++|.++|++++ +..|+.+++.+|||++++++|++++..
T Consensus 239 ~~~~~~~----~~~~~~~~g~~~~~~~~~~~~~~~~~~~f~~~~~~~~--g~~p~~~~~~~yda~~~~~~al~~ag~--- 309 (366)
T 3td9_A 239 ADAPELI----EIGGEAVEGLLFTTHYHPKAASNPVAKKFVEVYKEKY--GKEPAALNALGYDAYMVLLDAIERAGS--- 309 (366)
T ss_dssp GCSTHHH----HHHGGGGTTCEEEESCCGGGCCSHHHHHHHHHHHHHH--SSCCCHHHHHHHHHHHHHHHHHHHHTS---
T ss_pred cCCHHHH----HHHhHHhCCeEEEEeeCCCCCCCHHHHHHHHHHHHHH--CCCCchhHHHHHHHHHHHHHHHHHhCC---
Confidence 4332111 2233567888888776654 678999999999999 567889999999999999999999632
Q ss_pred cccccCCccccccCCCccccCCccccCchHHHHHHHhcCc-ccccccceEEcCCCCCccceEEEEEeeccceEEEEEeeC
Q 002309 338 KISFSNDSRLKTMEGGNLHLGAMSIFDDGMLLLGNILQSN-LVGLTGPLKFNSDRSLIHAAYDIINVIGTGFRMIGYWSN 416 (938)
Q Consensus 338 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~l~~~~-f~G~tG~v~F~~~g~~~~~~~~I~~~~~~~~~~Vg~w~~ 416 (938)
.+++.+.++|++++ |+|++|+++||++|++. ..+.|+++++++++.|+.|++
T Consensus 310 --------------------------~~~~~~~~~l~~~~~~~g~~G~i~f~~~g~~~-~~~~i~~~~~g~~~~v~~~~~ 362 (366)
T 3td9_A 310 --------------------------FDREKIAEEIRKTRNFNGASGIINIDENGDAI-KSVVVNIVKNGSVDFEAVINP 362 (366)
T ss_dssp --------------------------CCHHHHHHHHTTCCSEEETTEEECBCTTSCBC-CCEEEEEEETTEEEEEEEECG
T ss_pred --------------------------CCHHHHHHHHHhCCCCcccceeeEECCCCCcc-CceEEEEEECCEEEEEEecCh
Confidence 14899999999998 99999999999999864 558999999999999999987
Q ss_pred CC
Q 002309 417 YS 418 (938)
Q Consensus 417 ~~ 418 (938)
.+
T Consensus 363 ~~ 364 (366)
T 3td9_A 363 DD 364 (366)
T ss_dssp GG
T ss_pred hh
Confidence 53
No 22
>4gnr_A ABC transporter substrate-binding protein-branche amino acid transport; amino acid-binding protein, surface-exposed protein; HET: MLY; 1.00A {Streptococcus pneumoniae}
Probab=100.00 E-value=2.1e-37 Score=343.50 Aligned_cols=339 Identities=16% Similarity=0.195 Sum_probs=280.7
Q ss_pred CCCeeEEEEEEeeCC---CcchhHHHHHHHHHHHHHhcCCCCCCCCEEEEEEccCCCChHHHHHHHHHHHhc-CcEEEEc
Q 002309 27 ARPAVVNVGALFTLD---STIGRVAKIAIEEAVKDVNSNSSILHGTKLNITMQSSNCSGFIGMVEALRFMET-DIVAIIG 102 (938)
Q Consensus 27 ~~~~~i~IG~i~~~~---~~~g~~~~~a~~~Av~~iN~~~~il~g~~l~~~~~D~~~~~~~a~~~a~~li~~-~V~aviG 102 (938)
..+++|+||+++|+| +.+|.....|+++|+++||++||++ |++|+++++|++++|..|++.+.+|+.+ +|.+|+|
T Consensus 3 ~~~~tIkIG~~~plsG~~a~~G~~~~~g~~lAv~~iN~~GGi~-Gr~ielv~~D~~~~p~~a~~~a~~li~~~~v~~i~g 81 (353)
T 4gnr_A 3 VEEKTIKIGFNFEESGSLAAYGTAEQKGAQLAVDEINAAGGID-GKQIEVVDKDNKSETAEAASVTTNLVTQSKVSAVVG 81 (353)
T ss_dssp ---CEEEEEEEECCSSTTHHHHHHHHHHHHHHHHHHHHTTCBT-TBEEEEEEEECTTCHHHHHHHHHHHHHTSCCSEEEC
T ss_pred CCCCeEEEEEEeCCcCchhHhHHHHHHHHHHHHHHHHhcCCCC-CeEEEEEEecCCCCHHHHHHHHHHHHhhCCceEEec
Confidence 456799999999998 4568899999999999999999995 9999999999999999999999999987 7899999
Q ss_pred CCChhHHHHHHHhhccCCccEEEcccCCCCCCCCCCCceEEecCCchHHHHHHHHHHHhc-CCcEEEEEEEc-Cccccch
Q 002309 103 PQCSTVAHIVSYVSNELQVPLLSFGVTDPTLSSLQYPFFVRTTQSDSYQMTAVAEMVSYY-GWNAVSVIFVD-NEYGRNG 180 (938)
Q Consensus 103 p~~s~~~~~va~~~~~~~iP~Is~~~~~~~l~~~~~p~~~r~~ps~~~~~~ai~~~l~~~-~w~~vaii~~d-~~~g~~~ 180 (938)
|.+|..+.+++++++..++|+|++.++++.++. .++|+||+.|++..++.+++.++... +++++++++++ ++||++.
T Consensus 82 ~~~s~~~~a~~~~~~~~~vp~i~~~~~~~~l~~-~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yg~~~ 160 (353)
T 4gnr_A 82 PATSGATAAAVANATKAGVPLISPSATQDGLTK-GQDYLFIGTFQDSFQGKIISNYVSEKLNAKKVVLYTDNASDYAKGI 160 (353)
T ss_dssp CCSHHHHHHHHHHHHHTTCCEEESSCCCTTTTT-TCTTEEECSCCHHHHHHHHHHHHHHTSCCSEEEEEEETTCHHHHHH
T ss_pred cccCcccceehhhhhccCcceEeeccccccccc-CCccccccCCCcHHHHHHHHHHHHHhcCCcEEEEEEcCchHHHHHH
Confidence 999999999999999999999999999988875 45899999999999999999998765 44555555554 4588777
Q ss_pred HHHHHHHHhhcceEEEEEeecCCCCCCChhhHHHHHHHHhcCCceEEEEEeChhhHHHHHHHHHHcCCCCCCeEEEEeCc
Q 002309 181 VSALNDKLAERRCRISYKSGIPPESGVNTGYVMDLLVKVALMESRVIVLHVSPSLGFQVFSVAKYLGMMGNGYVWIATDW 260 (938)
Q Consensus 181 ~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~lk~~~~~viv~~~~~~~~~~~l~~a~~~g~~~~~~~wi~~~~ 260 (938)
.+.+.+ +.|++++....++++ +.|+.+++.+++..++|+|++.+.+.++..++++++++|+..+ |+.+++
T Consensus 161 ~~~~~~---~~g~~vv~~~~~~~~----~~d~~~~l~~i~~~~~d~v~~~~~~~~~~~~~~~~~~~g~~~~---~~~~~~ 230 (353)
T 4gnr_A 161 AKSFRE---SYKGEIVADETFVAG----DTDFQAALTKMKGKDFDAIVVPGYYNEAGKIVNQARGMGIDKP---IVGGDG 230 (353)
T ss_dssp HHHHHH---HCCSEEEEEEEECTT----CCCCHHHHHHHHTSCCSEEECCSCHHHHHHHHHHHHHTTCCSC---EEECGG
T ss_pred HHHHHH---HcCCEEEEEEeeCCC----CCCHHHHHHHHHhcCCCEEEEecCcHHHHHHHHHHHHcCCCCc---EEEecc
Confidence 666654 457899988889877 6789999999999999999999999999999999999998654 555554
Q ss_pred chhcccCCCCChhhhhccccEEEEEEcCC---CChhhHHHHHHHhhhcCCCCCCCchhhHHhHHHHHHHHHHHHHHhcCC
Q 002309 261 LAYMLDSASLPSETLESMQGVLVLRQHIP---ESDRKKNFLSRWKNLTGGSLGMNSYGLYAYDSVWLLAHAIESFFNQGG 337 (938)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~---~~~~~~~f~~~~~~~~~~~~~~~~~~~~~YDav~~~a~Al~~~~~~~~ 337 (938)
+...... .....+...|.+....+.+ ..+..++|.++|++++ +..|+.+++++|||++++++|++++
T Consensus 231 ~~~~~~~---~~~~~~~~~g~~~~~~~~~~~~~~~~~~~f~~~~~~~~--g~~p~~~a~~~Yda~~~la~Ai~~a----- 300 (353)
T 4gnr_A 231 FNGEEFV---QQATAEKASNIYFISGFSTTVEVSAKAKAFLDAYRAKY--NEEPSTFAALAYDSVHLVANAAKGA----- 300 (353)
T ss_dssp GCSHHHH---HHHCTTTCCSEEEEESCCSSSSCCHHHHHHHHHHHHHH--SSCCCHHHHHHHHHHHHHHHHHTTC-----
T ss_pred cccchhh---hhhhhhhhcCccccccccCCCCCCHHHHHHHHHHHHHh--CCCCChhHHHHHHHHHHHHHHHhcC-----
Confidence 4322111 0112345677776665443 4577899999999999 6788999999999999999999752
Q ss_pred cccccCCccccccCCCccccCCccccCchHHHHHHHhcC-cccccccceEEcCCCCCccceEEEEEeeccceEEEEEe
Q 002309 338 KISFSNDSRLKTMEGGNLHLGAMSIFDDGMLLLGNILQS-NLVGLTGPLKFNSDRSLIHAAYDIINVIGTGFRMIGYW 414 (938)
Q Consensus 338 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~l~~~-~f~G~tG~v~F~~~g~~~~~~~~I~~~~~~~~~~Vg~w 414 (938)
.++..+.++|+++ .|+|++|+++||++|++ ...+.|+++++++++.+...
T Consensus 301 --------------------------~~~~~v~~aL~~~~~~~g~~G~i~f~~~g~~-~~~~~i~~v~~Gk~~~~~~v 351 (353)
T 4gnr_A 301 --------------------------KNSGEIKDNLAXTKDFEGVTGQTSFDADHNT-VKTAYMMTMNNGKVEAAEVV 351 (353)
T ss_dssp --------------------------SSHHHHHHHHHTCCCEEETTEEECCCTTSCC-CCCEEEEEEETTEEEEEEEE
T ss_pred --------------------------CCHHHHHHHHHhcCCCccCceeEEECCCcCC-cCCeEEEEEECCEEEEEEEe
Confidence 0377899999988 59999999999999985 56677999999998877543
No 23
>3hut_A Putative branched-chain amino acid ABC transporter; extracellular ligand-binding receptor,transport protein; 1.93A {Rhodospirillum rubrum atcc 11170}
Probab=100.00 E-value=6.2e-37 Score=340.56 Aligned_cols=344 Identities=17% Similarity=0.181 Sum_probs=296.6
Q ss_pred eeEEEEEEeeCCC---cchhHHHHHHHHHHHHHhcCCCCCCCCEEEEEEccCCCChHHHHHHHHHHH-hcCcEEEEcCCC
Q 002309 30 AVVNVGALFTLDS---TIGRVAKIAIEEAVKDVNSNSSILHGTKLNITMQSSNCSGFIGMVEALRFM-ETDIVAIIGPQC 105 (938)
Q Consensus 30 ~~i~IG~i~~~~~---~~g~~~~~a~~~Av~~iN~~~~il~g~~l~~~~~D~~~~~~~a~~~a~~li-~~~V~aviGp~~ 105 (938)
++|+||+++|++. ..|.....|+++|++++|+++|++ |+++++++.|+++++..+.+.+.+|+ +++|.+||||.+
T Consensus 3 ~~i~IG~i~p~sg~~~~~~~~~~~g~~~a~~~~n~~ggi~-G~~~~l~~~d~~~~~~~~~~~~~~l~~~~~v~~iig~~~ 81 (358)
T 3hut_A 3 LALLLGYELPLTGANAAYGRVFQEAARLQLDRFNAAGGVG-GRPVDILYADSRDDADQARTIARAFVDDPRVVGVLGDFS 81 (358)
T ss_dssp CCEEEEEEECSSSTTHHHHHHHHHHHHHHHHHHHHTTTBT-TBCEEEEEEECTTCHHHHHHHHHHHHHCTTEEEEEECSS
T ss_pred ccEEEEEEeccCCchhhcCHHHHHHHHHHHHHHHhhCCCC-CeEEEEEEecCCCCHHHHHHHHHHHhccCCcEEEEcCCC
Confidence 5799999999974 457889999999999999999996 99999999999999999999999999 669999999999
Q ss_pred hhHHHHHHHhhccCCccEEEcccCCCCCCCCCCCceEEecCCchHHHHHHHHHHHhcCCcEEEEEEEcCccccchHHHHH
Q 002309 106 STVAHIVSYVSNELQVPLLSFGVTDPTLSSLQYPFFVRTTQSDSYQMTAVAEMVSYYGWNAVSVIFVDNEYGRNGVSALN 185 (938)
Q Consensus 106 s~~~~~va~~~~~~~iP~Is~~~~~~~l~~~~~p~~~r~~ps~~~~~~ai~~~l~~~~w~~vaii~~d~~~g~~~~~~l~ 185 (938)
+..+.++++++...+||+|++.++++.+++.. |++||+.|++..++.++++++...||++|++|+.++.+|....+.++
T Consensus 82 s~~~~~~~~~~~~~~iP~v~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~g~~~ia~i~~~~~~~~~~~~~~~ 160 (358)
T 3hut_A 82 STVSMAAGSIYGKEGMPQLSPTAAHPDYIKIS-PWQFRAITTPAFEGPNNAAWMIGDGFTSVAVIGVTTDWGLSSAQAFR 160 (358)
T ss_dssp HHHHHHHHHHHHHHTCCEEESSCCCGGGTTSC-TTEEESSCCGGGHHHHHHHHHHHTTCCEEEEEEESSHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHCCCcEEecCCCCcccccCC-CeEEEecCChHHHHHHHHHHHHHcCCCEEEEEecCcHHHHHHHHHHH
Confidence 99999999999999999999988888777654 99999999999999999999888899999999999999999999999
Q ss_pred HHHhhcceEEEEEeecCCCCCCChhhHHHHHHHHhcCCceEEEEEeChhhHHHHHHHHHHcCCCCCCeEEEEeCcchhcc
Q 002309 186 DKLAERRCRISYKSGIPPESGVNTGYVMDLLVKVALMESRVIVLHVSPSLGFQVFSVAKYLGMMGNGYVWIATDWLAYML 265 (938)
Q Consensus 186 ~~l~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~lk~~~~~viv~~~~~~~~~~~l~~a~~~g~~~~~~~wi~~~~~~~~~ 265 (938)
+++++.|++++....++.+ ..++...++++++.++++|++.+....+..+++++++.|+..+ |+.++.+....
T Consensus 161 ~~l~~~g~~v~~~~~~~~~----~~~~~~~~~~l~~~~~d~i~~~~~~~~a~~~~~~~~~~g~~~p---~~~~~~~~~~~ 233 (358)
T 3hut_A 161 KAFELRGGAVVVNEEVPPG----NRRFDDVIDEIEDEAPQAIYLAMAYEDAAPFLRALRARGSALP---VYGSSALYSPK 233 (358)
T ss_dssp HHHHHTTCEEEEEEEECTT----CCCCHHHHHHHHHHCCSEEEEESCHHHHHHHHHHHHHTTCCCC---EEECGGGCSHH
T ss_pred HHHHHcCCEEEEEEecCCC----CccHHHHHHHHHhcCCCEEEEccCchHHHHHHHHHHHcCCCCc---EEecCcccCHH
Confidence 9999999999887777765 5678889999999999999999999899999999999998654 77766543221
Q ss_pred cCCCCChhhhhccccEEEEEEcCC--CChhhHHHHHHHhhhcCCCCCCCchhhHHhHHHHHHHHHHHHHHhcCCcccccC
Q 002309 266 DSASLPSETLESMQGVLVLRQHIP--ESDRKKNFLSRWKNLTGGSLGMNSYGLYAYDSVWLLAHAIESFFNQGGKISFSN 343 (938)
Q Consensus 266 ~~~~~~~~~~~~~~g~~~~~~~~~--~~~~~~~f~~~~~~~~~~~~~~~~~~~~~YDav~~~a~Al~~~~~~~~~~~~~~ 343 (938)
.. ....+..+|++...++.+ ..+..++|.++|++++ +..|+.+++.+|||++++++|++++...
T Consensus 234 ~~----~~~~~~~~g~~~~~~~~~~~~~~~~~~f~~~~~~~~--~~~p~~~~~~~yda~~~~~~al~~ag~~-------- 299 (358)
T 3hut_A 234 FI----DLGGPAVEGVRLATAFVLGASDPVVVEFVSAYETLY--GAIPTLFAAHGYDAVGIMLAAVGRAGPE-------- 299 (358)
T ss_dssp HH----HHHGGGGTTCEEEESCCTTCCSHHHHHHHHHHHHHH--SSCCCHHHHHHHHHHHHHHHHHHHHCTT--------
T ss_pred HH----HHhHHhhCCeEEEeccCCCCCCHHHHHHHHHHHHHH--CCCCCHHHHHHHHHHHHHHHHHHHhCCC--------
Confidence 11 223356789888887665 4678999999999999 5678899999999999999999996211
Q ss_pred CccccccCCCccccCCccccCchHH-HHHHHhcC-cccccccceEEcCCCCCccceEEEEEeeccceEEEEEeeCC
Q 002309 344 DSRLKTMEGGNLHLGAMSIFDDGML-LLGNILQS-NLVGLTGPLKFNSDRSLIHAAYDIINVIGTGFRMIGYWSNY 417 (938)
Q Consensus 344 ~~~~~~~~~~~~~~~~~~~~~~g~~-l~~~l~~~-~f~G~tG~v~F~~~g~~~~~~~~I~~~~~~~~~~Vg~w~~~ 417 (938)
+++. +.++|+++ +|+|++|+++|+++|++....+.|+++++++|+.+..+.+.
T Consensus 300 ---------------------~~~~~~~~~l~~~~~~~g~~G~~~f~~~g~~~~~~~~i~~~~~G~~~~~~~~~~~ 354 (358)
T 3hut_A 300 ---------------------VTRESLRDALAATDRYAGVTGITRFDPETRETTKILTRLVVREGDFRVIDREGHH 354 (358)
T ss_dssp ---------------------CCHHHHHHHHHTCCSEEETTEEEEECTTTCCEEECCEEEEEETTEEEEC------
T ss_pred ---------------------ChHHHHHHHHHhcCCCcCCceeeEECCCCCcCCCceEEEEEECCEEEEecccccc
Confidence 3667 99999999 89999999999999997678899999999999988766553
No 24
>3lkb_A Probable branched-chain amino acid ABC transporter, amino acid binding protein; branched amino acid, PSI-II, NYSGXRC, structural genomics; 2.40A {Thermus thermophilus}
Probab=100.00 E-value=2.1e-37 Score=348.73 Aligned_cols=352 Identities=13% Similarity=0.027 Sum_probs=298.0
Q ss_pred CCeeEEEEEEeeCCC---cchhHHHHHHHHHHHHHhcCCCCCCCCEEEEEEccCCCChHHHHHHHHHHHhc-CcEEEEcC
Q 002309 28 RPAVVNVGALFTLDS---TIGRVAKIAIEEAVKDVNSNSSILHGTKLNITMQSSNCSGFIGMVEALRFMET-DIVAIIGP 103 (938)
Q Consensus 28 ~~~~i~IG~i~~~~~---~~g~~~~~a~~~Av~~iN~~~~il~g~~l~~~~~D~~~~~~~a~~~a~~li~~-~V~aviGp 103 (938)
..++|+||+++|++. ..|.....|+++|++++|++||++ |+++++++.|+++++..+.+.+.+|+.+ +|.+|||
T Consensus 4 a~~~i~IG~~~p~sG~~a~~g~~~~~g~~~a~~~iN~~ggi~-G~~i~l~~~D~~~~~~~~~~~~~~li~~~~V~~iig- 81 (392)
T 3lkb_A 4 GQQQVTLFWSGAITGPTSDAGAPYGAAVEDYCKWANERKLVP-GVVFNCVVRDDQYNNANTQRFFEEAVDRFKIPVFLS- 81 (392)
T ss_dssp CCEEEEEEEEECSSSTTHHHHHHHHHHHHHHHHHHHHHTSST-TEEEEEEEEECTTCHHHHHHHHHHHHHTTCCSCEEE-
T ss_pred cCCceEEEEEecccCchhhcChhHHHHHHHHHHHHHhcCCcC-CeEeEEEEecCCCCHHHHHHHHHHHHhhcCcEEEEe-
Confidence 357999999999984 457889999999999999999996 9999999999999999999999999997 9999999
Q ss_pred CChhHHHHHHHhhccCCccEEEcccCCCCCCC-CCCCceEEecCCchHHHHHHHHHHHh-cCCcEEEEEEEcCccccchH
Q 002309 104 QCSTVAHIVSYVSNELQVPLLSFGVTDPTLSS-LQYPFFVRTTQSDSYQMTAVAEMVSY-YGWNAVSVIFVDNEYGRNGV 181 (938)
Q Consensus 104 ~~s~~~~~va~~~~~~~iP~Is~~~~~~~l~~-~~~p~~~r~~ps~~~~~~ai~~~l~~-~~w~~vaii~~d~~~g~~~~ 181 (938)
.+|..+.++++++...+||+|+++++.+ +.+ ..+|++||+.|++..++.++++++.+ ++|++|++|+++++||+...
T Consensus 82 ~~s~~~~~~~~~~~~~~iP~i~~~~~~~-~~~~~~~~~~f~~~~~~~~~~~~~~~~l~~~~g~~~iaii~~~~~~g~~~~ 160 (392)
T 3lkb_A 82 YATGANLQLKPLIQELRIPTIPASMHIE-LIDPPNNDYIFLPTTSYSEQVVALLEYIAREKKGAKVALVVHPSPFGRAPV 160 (392)
T ss_dssp CCHHHHHHHHHHHHHHTCCEEESCCCGG-GGSSSSCTTBCEEECCHHHHHHHHHHHHHHHCTTCEEEEEECSSHHHHTTH
T ss_pred CCcHHHHHHHHHHHhCCceEEecccChh-hccCCCCCceEecCCChHHHHHHHHHHHHHhCCCCEEEEEEeCCchhhhHH
Confidence 6888899999999999999999765443 444 56899999999999999999999876 69999999999999999999
Q ss_pred HHHHHHHhhcceEEEEEeecCCCCCCChhhHHHHHHHHhcCCceEEEEEeChhhHHHHHHHHHHcCCCCCCeEEEEeCcc
Q 002309 182 SALNDKLAERRCRISYKSGIPPESGVNTGYVMDLLVKVALMESRVIVLHVSPSLGFQVFSVAKYLGMMGNGYVWIATDWL 261 (938)
Q Consensus 182 ~~l~~~l~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~lk~~~~~viv~~~~~~~~~~~l~~a~~~g~~~~~~~wi~~~~~ 261 (938)
+.+++++++.|++++....++.+ ..|+...++++++.++++|++.+....+..++++++++|+.. .|+.++++
T Consensus 161 ~~~~~~l~~~G~~v~~~~~~~~~----~~d~~~~~~~l~~~~~dav~~~~~~~~a~~~~~~~~~~g~~~---~~~~~~~~ 233 (392)
T 3lkb_A 161 EDARKAARELGLQIVDVQEVGSG----NLDNTALLKRFEQAGVEYVVHQNVAGPVANILKDAKRLGLKM---RHLGAHYT 233 (392)
T ss_dssp HHHHHHHHHHTCEEEEEEECCTT----CCCCHHHHHHHHHTTCCEEEEESCHHHHHHHHHHHHHTTCCC---EEEECGGG
T ss_pred HHHHHHHHHcCCeEEEEEeeCCC----CcCHHHHHHHHHhcCCCEEEEecCcchHHHHHHHHHHcCCCc---eEEEecCc
Confidence 99999999999999888877765 668889999999999999999999999999999999999854 36666544
Q ss_pred hhcccCCCCChhhhhccccEEEEEEcCC--CChhhHHHHHHHhhhcCCCCCCCch----hhHHhHHHHHHHHHHHHHHhc
Q 002309 262 AYMLDSASLPSETLESMQGVLVLRQHIP--ESDRKKNFLSRWKNLTGGSLGMNSY----GLYAYDSVWLLAHAIESFFNQ 335 (938)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~--~~~~~~~f~~~~~~~~~~~~~~~~~----~~~~YDav~~~a~Al~~~~~~ 335 (938)
...... .......+|++...++.+ ..+..++|.++|++++ +..++.+ +..+|||++++++|++++...
T Consensus 234 ~~~~~~----~~~g~~~~g~~~~~~~~~~~~~~~~~~f~~~~~~~~--~~~p~~~~~~~~~~~yda~~~~~~al~~ag~~ 307 (392)
T 3lkb_A 234 GGPDLI----ALAGDAAEGFLWATSFYMAHEDTPGIRLQKEIGRKY--GRPENFIESVNYTNGMLAAAIAVEAIRRAQER 307 (392)
T ss_dssp CSHHHH----HHHGGGGTTCEEEESBCCTTSCCHHHHHHHHHHHHT--TCCHHHHTCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHH----HhhhhhhcCeEEEEeecCCCCCchhHHHHHHHHHHh--CCCcccccchhHHHHHHHHHHHHHHHHHhhcc
Confidence 321111 123346788888876643 2456789999999998 4555444 789999999999999998642
Q ss_pred CCcccccCCccccccCCCccccCCccccCchHHHHHHHhcCc----cc-------ccccceEEcCCCCCccceEEEEEee
Q 002309 336 GGKISFSNDSRLKTMEGGNLHLGAMSIFDDGMLLLGNILQSN----LV-------GLTGPLKFNSDRSLIHAAYDIINVI 404 (938)
Q Consensus 336 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~l~~~~----f~-------G~tG~v~F~~~g~~~~~~~~I~~~~ 404 (938)
++. .+++.+.++|++++ |+ |++|+++|+++|++....+.|++++
T Consensus 308 ~~~-------------------------~~~~~v~~aL~~~~~~~~~~~~~~~~~G~~G~i~f~~~~~~~~~~~~i~~~~ 362 (392)
T 3lkb_A 308 FKR-------------------------ITNETVYQAIVGMNGPNAFKPGFAVSTKQGVEIDFTKSEHTGAEGLRILEAK 362 (392)
T ss_dssp HSS-------------------------CCHHHHHHHHHTCCGGGCBCCSSBCCCSSSCSBCCCSSCCEEECCBEEEEEE
T ss_pred CCC-------------------------CCHHHHHHHHHhcCCCcCcccccccccccceeeEeCCCCcCCcccEEEEEEe
Confidence 111 14899999999997 98 9999999999888767788999999
Q ss_pred ccceEEEEEeeCCCCC
Q 002309 405 GTGFRMIGYWSNYSGL 420 (938)
Q Consensus 405 ~~~~~~Vg~w~~~~g~ 420 (938)
+++++.|+.|....++
T Consensus 363 ~g~~~~v~~w~~~~~~ 378 (392)
T 3lkb_A 363 GGRFVPVTEPFTSALF 378 (392)
T ss_dssp TTEEEECSCCBCCHHH
T ss_pred CCEEEEeccccchhHH
Confidence 9999999999876554
No 25
>1usg_A Leucine-specific binding protein; leucine-binding protein, X-RAY crystallography, protein structure, ABC transport systems, transport protein; 1.53A {Escherichia coli} SCOP: c.93.1.1 PDB: 1usi_A* 1usk_A 2lbp_A 1z15_A 1z16_A 1z17_A 1z18_A 2liv_A
Probab=100.00 E-value=5.6e-37 Score=339.23 Aligned_cols=339 Identities=17% Similarity=0.227 Sum_probs=290.4
Q ss_pred eeEEEEEEeeCCCc---chhHHHHHHHHHHHHHhcCCCCCCCCEEEEEEccCCCChHHHHHHHHHHHhcCcEEEEcCCCh
Q 002309 30 AVVNVGALFTLDST---IGRVAKIAIEEAVKDVNSNSSILHGTKLNITMQSSNCSGFIGMVEALRFMETDIVAIIGPQCS 106 (938)
Q Consensus 30 ~~i~IG~i~~~~~~---~g~~~~~a~~~Av~~iN~~~~il~g~~l~~~~~D~~~~~~~a~~~a~~li~~~V~aviGp~~s 106 (938)
++|+||+++|++.. +|.....|+++|+++||++||+ +|++|++++.|+++++..+.+.+.+|++++|.+||||.++
T Consensus 1 ~~i~IG~~~p~~g~~~~~~~~~~~g~~~a~~~iN~~ggi-~G~~l~l~~~d~~~~~~~~~~~~~~l~~~~v~~iig~~~s 79 (346)
T 1usg_A 1 DDIKVAVVGAMSGPIAQWGDMEFNGARQAIKDINAKGGI-KGDKLVGVEYDDACDPKQAVAVANKIVNDGIKYVIGHLCS 79 (346)
T ss_dssp CCEEEEEEECSSSTTHHHHHHHHHHHHHHHHHHHHTTTB-TTBCEEEEEEECTTCHHHHHHHHHHHHHTTCCEEECCSSH
T ss_pred CcEEEEEEeCCCCcchhcCHHHHHHHHHHHHHHHHhCCC-CCeEEEEEEeCCCCCHHHHHHHHHHHHhCCCCEEEcCCCc
Confidence 36999999999743 5778899999999999999999 6999999999999999999999999999999999999999
Q ss_pred hHHHHHHHhhccCCccEEEcccCCCCCCCCCCCceEEecCCchHHHHHHHHHH-HhcCCcEEEEEEEcCccccchHHHHH
Q 002309 107 TVAHIVSYVSNELQVPLLSFGVTDPTLSSLQYPFFVRTTQSDSYQMTAVAEMV-SYYGWNAVSVIFVDNEYGRNGVSALN 185 (938)
Q Consensus 107 ~~~~~va~~~~~~~iP~Is~~~~~~~l~~~~~p~~~r~~ps~~~~~~ai~~~l-~~~~w~~vaii~~d~~~g~~~~~~l~ 185 (938)
..+.++++++...++|+|++.++++.+++..+|++||+.|++..++.++++++ +++||++|++|+.++.+|....+.++
T Consensus 80 ~~~~~~~~~~~~~~ip~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~i~~i~~~~~~~~~~~~~~~ 159 (346)
T 1usg_A 80 SSTQPASDIYEDEGILMISPGATNPELTQRGYQHIMRTAGLDSSQGPTAAKYILETVKPQRIAIIHDKQQYGEGLARSVQ 159 (346)
T ss_dssp HHHHHHHHHHHHHTCEEEECCCCCGGGGSSCCSSEEECSCCGGGHHHHHHHHHHHTTCCSSEEEEECSSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCeEEeeCCCChHHhcCCCCcEEeccCChHHHHHHHHHHHHHhcCCCeEEEEECCCchHHHHHHHHH
Confidence 98889999999999999999888877776558999999999999999999998 56799999999999999999999999
Q ss_pred HHHhhcceEEEEEeecCCCCCCChhhHHHHHHHHhcCCceEEEEEeChhhHHHHHHHHHHcCCCCCCeEEEEeCcchhcc
Q 002309 186 DKLAERRCRISYKSGIPPESGVNTGYVMDLLVKVALMESRVIVLHVSPSLGFQVFSVAKYLGMMGNGYVWIATDWLAYML 265 (938)
Q Consensus 186 ~~l~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~lk~~~~~viv~~~~~~~~~~~l~~a~~~g~~~~~~~wi~~~~~~~~~ 265 (938)
+++++.|++++....++.+ ..++...++++++.++++|++.+....+..+++++++.|+..+ |+.++.+....
T Consensus 160 ~~l~~~g~~v~~~~~~~~~----~~d~~~~~~~l~~~~~d~i~~~~~~~~a~~~~~~~~~~g~~~~---~~~~~~~~~~~ 232 (346)
T 1usg_A 160 DGLKAANANVVFFDGITAG----EKDFSALIARLKKENIDFVYYGGYYPEMGQMLRQARSVGLKTQ---FMGPEGVGNAS 232 (346)
T ss_dssp HHHHHTTCCEEEEEECCTT----CCCCHHHHHHHHHTTCCEEEEESCHHHHHHHHHHHHHTTCCCE---EEECGGGCCTT
T ss_pred HHHHHcCCEEEEEeccCCC----CcCHHHHHHHHHhcCCCEEEEcCcchHHHHHHHHHHHcCCCCe---EEecCCCCcHH
Confidence 9999999999877667654 4567788999998999999999888889999999999998654 78776553211
Q ss_pred cCCCCChhhhhccccEEEEEEcC-CCChhhHHHHHHHhhhcCCCCCCCchhhHHhHHHHHHHHHHHHHHhcCCcccccCC
Q 002309 266 DSASLPSETLESMQGVLVLRQHI-PESDRKKNFLSRWKNLTGGSLGMNSYGLYAYDSVWLLAHAIESFFNQGGKISFSND 344 (938)
Q Consensus 266 ~~~~~~~~~~~~~~g~~~~~~~~-~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~YDav~~~a~Al~~~~~~~~~~~~~~~ 344 (938)
.. ....+..+|++...++. +..+..++|.++|++.+ +..++.++..+|||++++++|++++..
T Consensus 233 ~~----~~~~~~~~g~~~~~~~~~~~~~~~~~f~~~~~~~~--~~~~~~~~~~~yda~~~~~~al~~~g~---------- 296 (346)
T 1usg_A 233 LS----NIAGDAAEGMLVTMPKRYDQDPANQGIVDALKADK--KDPSGPYVWITYAAVQSLATALERTGS---------- 296 (346)
T ss_dssp HH----HHHGGGGTTCEEEECCCGGGSGGGHHHHHHHHHTT--CCCCCHHHHHHHHHHHHHHHHHHHHCC----------
T ss_pred HH----HHhhHhhCCeEEecCCCCCCCHHHHHHHHHHHHHh--CCCCchhHHHHHHHHHHHHHHHHHhCC----------
Confidence 00 12234578888776653 35677899999999988 567788999999999999999999621
Q ss_pred ccccccCCCccccCCccccCchHHHHHHHhcCcccccccceEEcCCCCCccceEEEEEee-ccceEEE
Q 002309 345 SRLKTMEGGNLHLGAMSIFDDGMLLLGNILQSNLVGLTGPLKFNSDRSLIHAAYDIINVI-GTGFRMI 411 (938)
Q Consensus 345 ~~~~~~~~~~~~~~~~~~~~~g~~l~~~l~~~~f~G~tG~v~F~~~g~~~~~~~~I~~~~-~~~~~~V 411 (938)
.+++.+.++|++.+|+|++|+++|+++|++....|.|++++ +++++.|
T Consensus 297 -------------------~~~~~l~~~l~~~~~~g~~G~i~f~~~g~~~~~~~~i~~~~~~G~~~~~ 345 (346)
T 1usg_A 297 -------------------DEPLALVKDLKANGANTVIGPLNWDEKGDLKGFDFGVFQWHADGSSTKA 345 (346)
T ss_dssp -------------------CCHHHHHHHHHHHCEEETTEEECBCTTSSBSSCCCEEEEECTTSCEEEC
T ss_pred -------------------CCHHHHHHHHHhCCCccceeeeEECCCCCccCCceEEEEEecCCEEEec
Confidence 13889999999999999999999999999876789999999 8888765
No 26
>3i09_A Periplasmic branched-chain amino acid-binding Pro; type I periplasmic binding protein, structural genomics, JOI for structural genomics; HET: MSE CIT; 1.80A {Burkholderia mallei}
Probab=100.00 E-value=1.7e-36 Score=339.23 Aligned_cols=334 Identities=15% Similarity=0.152 Sum_probs=290.1
Q ss_pred CeeEEEEEEeeCCCc---c-hhHHHHHHHHHHHHHhcCCCCCCCCEEEEEEccCCCChHHHHHHHHHHHh-cCcEEEEcC
Q 002309 29 PAVVNVGALFTLDST---I-GRVAKIAIEEAVKDVNSNSSILHGTKLNITMQSSNCSGFIGMVEALRFME-TDIVAIIGP 103 (938)
Q Consensus 29 ~~~i~IG~i~~~~~~---~-g~~~~~a~~~Av~~iN~~~~il~g~~l~~~~~D~~~~~~~a~~~a~~li~-~~V~aviGp 103 (938)
.++|+||+++|++.. + |.....|+++|++++ ++|+ .|++++++++|+++++..+.+.+.+|++ ++|.+||||
T Consensus 2 ~~~i~IG~~~p~sg~~a~~~g~~~~~g~~~A~~~~--~ggi-~G~~i~l~~~D~~~~~~~a~~~~~~li~~~~v~~iiG~ 78 (375)
T 3i09_A 2 ADSVKIGFITDMSGLYADIDGQGGLEAIKMAVADF--GGKV-NGKPIEVVYADHQNKADIAASKAREWMDRGGLDLLVGG 78 (375)
T ss_dssp CSSEEEEEEECSSSTTTTTSHHHHHHHHHHHHHHH--TSEE-TTEEEEEEEEECTTCHHHHHHHHHHHHHHSCEEEEEEC
T ss_pred CCCeEEEEEeCCCcccccccCHHHHHHHHHHHHHh--CCCC-CCeEEEEEEecCCCCHHHHHHHHHHHHhhCCCEEEECC
Confidence 468999999999833 4 778999999999999 4677 5999999999999999999999999998 699999999
Q ss_pred CChhHHHHHHHhhccCCccEEEcccCCCCCCC-CCCCceEEecCCchHHHHHHHHHHHhcCCcEEEEEEEcCccccchHH
Q 002309 104 QCSTVAHIVSYVSNELQVPLLSFGVTDPTLSS-LQYPFFVRTTQSDSYQMTAVAEMVSYYGWNAVSVIFVDNEYGRNGVS 182 (938)
Q Consensus 104 ~~s~~~~~va~~~~~~~iP~Is~~~~~~~l~~-~~~p~~~r~~ps~~~~~~ai~~~l~~~~w~~vaii~~d~~~g~~~~~ 182 (938)
.+|..+.++++++..+++|+|++.++++.+++ ..+||+||+.|++..++.++++++.+++|++|++|++|++||+...+
T Consensus 79 ~~s~~~~a~~~~~~~~~ip~i~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~l~~~g~~~vaii~~~~~~g~~~~~ 158 (375)
T 3i09_A 79 TNSATALSMNQVAAEKKKVYINIGAGADTLTNEQCTPYTVHYAYDTMALAKGTGSAVVKQGGKTWFFLTADYAFGKALEK 158 (375)
T ss_dssp SCHHHHHHHHHHHHHHTCEEEECSCCCGGGGTTTCCTTEEECSCCHHHHHHHHHHHHHHTTCCEEEEEEESSHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHcCceEEEeCCCchhhhcccCCCcEEEeeCChHHHHHHHHHHHHHcCCceEEEEecccHHHHHHHH
Confidence 99999999999999999999999888888887 56899999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhcceEEEEEeecCCCCCCChhhHHHHHHHHhcCCceEEEEEeChhhHHHHHHHHHHcCCCCCCeEEEEeCcch
Q 002309 183 ALNDKLAERRCRISYKSGIPPESGVNTGYVMDLLVKVALMESRVIVLHVSPSLGFQVFSVAKYLGMMGNGYVWIATDWLA 262 (938)
Q Consensus 183 ~l~~~l~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~lk~~~~~viv~~~~~~~~~~~l~~a~~~g~~~~~~~wi~~~~~~ 262 (938)
.+++.+++.|++|+....++.+ ..|+...+.++++.++++|++.+...++..++++++++|+..+. .++..+.+.
T Consensus 159 ~~~~~~~~~G~~v~~~~~~~~~----~~d~~~~l~~i~~~~~d~v~~~~~~~~~~~~~~~~~~~g~~~~~-~i~g~~~~~ 233 (375)
T 3i09_A 159 NTADVVKANGGKVLGEVRHPLS----ASDFSSFLLQAQSSKAQILGLANAGGDTVNAIKAAKEFGITKTM-KLAALLMFI 233 (375)
T ss_dssp HHHHHHHHTTCEEEEEEEECTT----CSCCHHHHHHHHHTCCSEEEEECCHHHHHHHHHHHHHTTGGGTC-EEEESSCCH
T ss_pred HHHHHHHHcCCEEeeeeeCCCC----CccHHHHHHHHHhCCCCEEEEecCchhHHHHHHHHHHcCCCcCc-eEEecccch
Confidence 9999999999999988888766 67889999999999999999999999999999999999997765 444444433
Q ss_pred hcccCCCCChhhhhccccEEEEEEcCCC-ChhhHHHHHHHhhhcCCCCCCCchhhHHhHHHHHHHHHHHHHHhcCCcccc
Q 002309 263 YMLDSASLPSETLESMQGVLVLRQHIPE-SDRKKNFLSRWKNLTGGSLGMNSYGLYAYDSVWLLAHAIESFFNQGGKISF 341 (938)
Q Consensus 263 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~-~~~~~~f~~~~~~~~~~~~~~~~~~~~~YDav~~~a~Al~~~~~~~~~~~~ 341 (938)
..+. ....+..+|++...++.++ .+..++|.++|+++| +..|+.+++.+|||++++++|++++..
T Consensus 234 ~~~~-----~~~~~~~~g~~~~~~~~~~~~~~~~~f~~~~~~~~--g~~p~~~a~~~Yda~~~~~~Al~~ag~------- 299 (375)
T 3i09_A 234 NDVH-----ALGLETTQGLVLTDSWYWNRDQASRQWAQRYFAKM--KKMPSSLQAADYSSVTTYLKAVQAAGS------- 299 (375)
T ss_dssp HHHH-----HHCHHHHTTCEEEESCCTTSSHHHHHHHHHHHHHH--SSCCCHHHHHHHHHHHHHHHHHHHHTS-------
T ss_pred hhHh-----hhChhhhCCeeeeeeecCCCCHHHHHHHHHHHHHH--CCCCcHHHHHHHHHHHHHHHHHHHhCC-------
Confidence 2211 1122457888877766543 678899999999999 677889999999999999999999621
Q ss_pred cCCccccccCCCccccCCccccCchHHHHHHHhcCcccccccceEEcCCCCCccceEEEEEeeccc
Q 002309 342 SNDSRLKTMEGGNLHLGAMSIFDDGMLLLGNILQSNLVGLTGPLKFNSDRSLIHAAYDIINVIGTG 407 (938)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~l~~~~f~G~tG~v~F~~~g~~~~~~~~I~~~~~~~ 407 (938)
.+++.|.++|++++|.|++|.+.|+++|++ ...+.|+++++++
T Consensus 300 ----------------------~~~~~l~~aL~~~~~~~~~G~~~f~~~g~~-~~~~~i~~v~~~~ 342 (375)
T 3i09_A 300 ----------------------TDSDKVMAQLKKMKIDDFYAKGYIRTDGSM-IHDMYLMEVKKPS 342 (375)
T ss_dssp ----------------------CCHHHHHHHHTTSCEESSSCEEEECTTSBE-ECCEEEEEECCGG
T ss_pred ----------------------CCHHHHHHHHhCCCccCCCCceEECCCCCe-eeeeEEEEEeccc
Confidence 148999999999999999999999999986 4567888887644
No 27
>3n0w_A ABC branched chain amino acid family transporter, periplasmic ligand binding protein...; receptor family ligand binding region; HET: MSE; 1.88A {Burkholderia xenovorans}
Probab=100.00 E-value=2.3e-36 Score=338.49 Aligned_cols=335 Identities=13% Similarity=0.118 Sum_probs=287.8
Q ss_pred CCeeEEEEEEeeCCC---cc-hhHHHHHHHHHHHHHhcCCCCCCCCEEEEEEccCCCChHHHHHHHHHHHh-cCcEEEEc
Q 002309 28 RPAVVNVGALFTLDS---TI-GRVAKIAIEEAVKDVNSNSSILHGTKLNITMQSSNCSGFIGMVEALRFME-TDIVAIIG 102 (938)
Q Consensus 28 ~~~~i~IG~i~~~~~---~~-g~~~~~a~~~Av~~iN~~~~il~g~~l~~~~~D~~~~~~~a~~~a~~li~-~~V~aviG 102 (938)
..++|+||+++|++. .. |.....|+++|++++ ++|+ .|++++++++|+++++..+.+.+.+|++ ++|.+|||
T Consensus 3 ~~~~i~IG~~~p~sg~~a~~~g~~~~~g~~~a~~~i--~ggi-~G~~i~l~~~D~~~~~~~a~~~~~~li~~~~v~~iiG 79 (379)
T 3n0w_A 3 STGQVTLGVLTDMSSVYADSAGKGSVAAVQLAIEDV--GGKA-LGQPVKLVSADYQMKTDVALSIAREWFDRDGVDAIFD 79 (379)
T ss_dssp ---CCEEEEEECSSSTTTTTSHHHHHHHHHHHHHHT--TTEE-TTEECEEEEEECTTCHHHHHHHHHHHHHHSCCCEEEE
T ss_pred CCCcEEEEEEeCCccccccccCHHHHHHHHHHHHHh--cCCC-CCeEEEEEEeCCCCCHHHHHHHHHHHHHhCCceEEEc
Confidence 356899999999983 34 788999999999999 4677 5999999999999999999999999998 69999999
Q ss_pred CCChhHHHHHHHhhccCCccEEEcccCCCCCCC-CCCCceEEecCCchHHHHHHHHHHHhcCCcEEEEEEEcCccccchH
Q 002309 103 PQCSTVAHIVSYVSNELQVPLLSFGVTDPTLSS-LQYPFFVRTTQSDSYQMTAVAEMVSYYGWNAVSVIFVDNEYGRNGV 181 (938)
Q Consensus 103 p~~s~~~~~va~~~~~~~iP~Is~~~~~~~l~~-~~~p~~~r~~ps~~~~~~ai~~~l~~~~w~~vaii~~d~~~g~~~~ 181 (938)
|.+|..+.+++++++.++||+|++.++++.+++ ..+||+||+.|++..+++++++++.+++|++|++|++|++||+...
T Consensus 80 ~~~s~~~~a~~~~~~~~~ip~i~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~l~~~g~~~vaii~~~~~~g~~~~ 159 (379)
T 3n0w_A 80 VVNSGTALAINNLVKDKKKLAFITAAAADQIGGTECNGYGIGFLYNFTSIVKTVVQAQLAKGYKTWFLMLPDAAYGDLMN 159 (379)
T ss_dssp CCCHHHHHHHHHHHHHHTCEEEECSCCCTTTTTTTCCSSEEECSCCHHHHHHHHHHHHHHTTCCEEEEEEESSHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHcCceEEEcCCCchhhhcccCCCcEEEEeCChHHHHHHHHHHHHHcCCcEEEEEecccchhHHHH
Confidence 999999999999999999999999898888887 4689999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhcceEEEEEeecCCCCCCChhhHHHHHHHHhcCCceEEEEEeChhhHHHHHHHHHHcCCCCCCeEEEEeCc-
Q 002309 182 SALNDKLAERRCRISYKSGIPPESGVNTGYVMDLLVKVALMESRVIVLHVSPSLGFQVFSVAKYLGMMGNGYVWIATDW- 260 (938)
Q Consensus 182 ~~l~~~l~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~lk~~~~~viv~~~~~~~~~~~l~~a~~~g~~~~~~~wi~~~~- 260 (938)
+.+++.+++.|++|+....++.+ ..|+.+.+.++++.++++|++.+.+.++..++++++++|+..+.+ ++.+..
T Consensus 160 ~~~~~~~~~~G~~v~~~~~~~~~----~~d~~~~l~~i~~~~~d~v~~~~~~~~~~~~~~~~~~~g~~~~~~-~~~~~~~ 234 (379)
T 3n0w_A 160 AAIRRELTAGGGQIVGSVRFPFE----TQDFSSYLLQAKASGAQLIVSTSGGAANINIMKQAREFGLPSKTQ-KVGGMID 234 (379)
T ss_dssp HHHHHHHHHHTCEEEEEEEECTT----CCCCHHHHHHHHHHTCSEEEECCCHHHHHHHHHHHHHTTCSCSSC-EEECCBC
T ss_pred HHHHHHHHHcCCEEEEEEeCCCC----CCCHHHHHHHHHHCCCCEEEEecccchHHHHHHHHHHcCCCCCCc-EEEeccc
Confidence 99999999999999988888766 668899999999999999999999999999999999999976544 344333
Q ss_pred chhcccCCCCChhhhhccccEEEEEEcCCC-ChhhHHHHHHHhhhcCCCCCCCchhhHHhHHHHHHHHHHHHHHhcCCcc
Q 002309 261 LAYMLDSASLPSETLESMQGVLVLRQHIPE-SDRKKNFLSRWKNLTGGSLGMNSYGLYAYDSVWLLAHAIESFFNQGGKI 339 (938)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~-~~~~~~f~~~~~~~~~~~~~~~~~~~~~YDav~~~a~Al~~~~~~~~~~ 339 (938)
+...+. ....+..+|++...++.++ .+..++|.++|+++| +..|+.+++.+|||++++++|++++..
T Consensus 235 ~~~~~~-----~~~~~~~~g~~~~~~~~~~~~~~~~~f~~~~~~~~--g~~p~~~~~~~Yda~~~~~~Al~~ag~----- 302 (379)
T 3n0w_A 235 ILTDVK-----SAGLRVMQGQEYATSFYWNMDDRTRAFAKRFYAKM--GKMPTNNQAGGYSAALQYLKAVNAIGS----- 302 (379)
T ss_dssp CHHHHH-----HHCHHHHTTCEEEESCCTTSSHHHHHHHHHHHHHH--SSCCCHHHHHHHHHHHHHHHHHHHHTC-----
T ss_pred chHHHH-----hhCHHhhCCeEEEeeecCCCCHHHHHHHHHHHHHH--CCCCChHHHHHHHHHHHHHHHHHHhCC-----
Confidence 222111 1122467888877766543 578899999999999 667889999999999999999999621
Q ss_pred cccCCccccccCCCccccCCccccCchHHHHHHHhcCcccccccc-eEEcCCCCCccceEEEEEeeccc
Q 002309 340 SFSNDSRLKTMEGGNLHLGAMSIFDDGMLLLGNILQSNLVGLTGP-LKFNSDRSLIHAAYDIINVIGTG 407 (938)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~l~~~~f~G~tG~-v~F~~~g~~~~~~~~I~~~~~~~ 407 (938)
.+++.|.++|++++|.|+.|. +.|+++|++ ...+.|+++++++
T Consensus 303 ------------------------~~~~~v~~aL~~~~~~~~~G~~~~f~~~g~~-~~~~~i~~~~~~~ 346 (379)
T 3n0w_A 303 ------------------------KDPQKVFAYLKTIKFDDAVTRHGTLRPGGRL-VRDMYLVRAKKPE 346 (379)
T ss_dssp ------------------------CCHHHHHHHHTTCCBCSSSCCSBEECTTSBE-ECCEEEEEECCGG
T ss_pred ------------------------CCHHHHHHHHhcCCccccCCCceeECCCCCc-ccceEEEEEEchh
Confidence 148999999999999999986 999999985 5778899988654
No 28
>3eaf_A ABC transporter, substrate binding protein; PSI2, NYSGXRC, substrate binding P structural genomics, protein structure initiative; 2.00A {Aeropyrum pernix}
Probab=100.00 E-value=3.1e-36 Score=338.89 Aligned_cols=349 Identities=16% Similarity=0.152 Sum_probs=291.8
Q ss_pred CeeEEEEEEeeCCC---cchhHHHHHHHHHHHHHhcCCCCC-CCC--EEEEEEccCCCChHHHHHHHHHHH-hcCcEEEE
Q 002309 29 PAVVNVGALFTLDS---TIGRVAKIAIEEAVKDVNSNSSIL-HGT--KLNITMQSSNCSGFIGMVEALRFM-ETDIVAII 101 (938)
Q Consensus 29 ~~~i~IG~i~~~~~---~~g~~~~~a~~~Av~~iN~~~~il-~g~--~l~~~~~D~~~~~~~a~~~a~~li-~~~V~avi 101 (938)
.++|+||+++|++. ..|.....|+++|+++||++||++ +|+ +|+++++|+++++..+.+.+.+|+ +++|.+||
T Consensus 2 ~~~i~IG~~~p~sG~~a~~g~~~~~g~~~a~~~iN~~ggi~~~G~~~~l~l~~~D~~~~~~~a~~~~~~li~~~~V~~ii 81 (391)
T 3eaf_A 2 SLTINVGLLVDETGPTSDVGKGYSLGAELAFKYFNEKGIYTKDGVRVNINYIKRDYAYNPTTAEEYYREFRDRYGVIAII 81 (391)
T ss_dssp CEEEEEEEEECSSSTTHHHHHHHHHHHHHHHHHHHHHCEECTTCCEEEEEEEEEECTTCHHHHHHHHHHHHHTTCCSEEE
T ss_pred CccEEEEEEEcCCCchhhhhHHHHHHHHHHHHHHHHcCCCccCCeEEEEEEEEeCCCCCHHHHHHHHHHHHhhcCcEEEE
Confidence 36899999999984 457888999999999999999995 699 999999999999999999999999 56999999
Q ss_pred cCCChhHHHHHHHhhccCCccEEEcccCCCCCCCCCCCceEEecCCchHHHHHHHHHHHh-cCCcEEEEEEE-cCccccc
Q 002309 102 GPQCSTVAHIVSYVSNELQVPLLSFGVTDPTLSSLQYPFFVRTTQSDSYQMTAVAEMVSY-YGWNAVSVIFV-DNEYGRN 179 (938)
Q Consensus 102 Gp~~s~~~~~va~~~~~~~iP~Is~~~~~~~l~~~~~p~~~r~~ps~~~~~~ai~~~l~~-~~w~~vaii~~-d~~~g~~ 179 (938)
| .+|..+.+++++++..+||+|++.++++ +. .+|++||+.|++..++.++++++.+ +||++|++|+. |++||+.
T Consensus 82 G-~~s~~~~a~~~~~~~~~iP~i~~~~~~~-~~--~~~~~f~~~~~~~~~~~~~~~~l~~~~g~~~iaii~~~~~~~g~~ 157 (391)
T 3eaf_A 82 G-WGTADTEKLSDQVDTDKITYISASYSAK-LL--VKPFNFYPAPDYSTQACSGLAFLASEFGQGKLALAYDSKVAYSRS 157 (391)
T ss_dssp E-CCHHHHHHHHHHHHHHTCEEEESCCCGG-GT--TSTTEECSSCCHHHHHHHHHHHHHHHHCSEEEEEEECTTCHHHHT
T ss_pred E-cCcHHHHHHHHHHhhcCCeEEecccchh-hc--CCCcEEEeCCCHHHHHHHHHHHHHHhcCCCEEEEEEecCChhHHH
Confidence 9 6888999999999999999999766544 33 6799999999999999999999877 69999999999 9999999
Q ss_pred hHHHHHHHHhhcceEEEEEeecCCCCCCChhhHHHHHHH--HhcCCceEEEEEeChhhHHHHHHHHHHcCCCCCCeEEEE
Q 002309 180 GVSALNDKLAERRCRISYKSGIPPESGVNTGYVMDLLVK--VALMESRVIVLHVSPSLGFQVFSVAKYLGMMGNGYVWIA 257 (938)
Q Consensus 180 ~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~--lk~~~~~viv~~~~~~~~~~~l~~a~~~g~~~~~~~wi~ 257 (938)
..+.+++++++.|++++....++.+ ..|+...+.+ +++.++++|++.+.+..+..++++++++|+..+ ++.
T Consensus 158 ~~~~~~~~l~~~G~~v~~~~~~~~~----~~d~~~~~~~~~l~~~~~dav~~~~~~~~~~~~~~~~~~~g~~~~---~~~ 230 (391)
T 3eaf_A 158 PIGAIKKAAPSLGLQVVGDYDLPLR----ATEADAERIAREMLAADPDYVWCGNTISSCSLLGRAMAKVGLDAF---LLT 230 (391)
T ss_dssp THHHHHHHTGGGTEEEEEEEECCTT----CCHHHHHHHHHHHHTTCCSEEEECSCHHHHHHHHHHHHHHTCCCE---EEE
T ss_pred HHHHHHHHHHHcCCceeeeeccCCC----CcCHHHHHHHHHHHHcCCCEEEEecCcHHHHHHHHHHHHCCCCce---EEE
Confidence 9999999999999999988888765 6789999999 999999999999999999999999999998553 555
Q ss_pred eCcchhcccCCCCChhhhhcccc-EEEEEEcC-----CCChhhHHHHHHHhhhcCCCCCC--CchhhHHhHHHHHHHHHH
Q 002309 258 TDWLAYMLDSASLPSETLESMQG-VLVLRQHI-----PESDRKKNFLSRWKNLTGGSLGM--NSYGLYAYDSVWLLAHAI 329 (938)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~g-~~~~~~~~-----~~~~~~~~f~~~~~~~~~~~~~~--~~~~~~~YDav~~~a~Al 329 (938)
+++..... ......+..+| ++...++. ++.+. .+|.++|++++ +...| +.+++.+|||++++++|+
T Consensus 231 ~~~~~~~~----~~~~~g~~~~g~~~~~~~~~~~~~~~~~~~-~~f~~~~~~~~-~~~~p~~~~~~~~~yda~~~l~~Al 304 (391)
T 3eaf_A 231 NVWGFDER----SPQLIGEGGYGKVFGISPFIYPMFGQDVEG-IQTIFEAARMN-GVSEDQINLRVVQGFVNVWLLIKAI 304 (391)
T ss_dssp CGGGCSTT----HHHHHCGGGTTSEEEEESBCCGGGCTTCHH-HHHHHHHHHHT-TCCGGGCCHHHHHHHHHHHHHHHHH
T ss_pred eccCCCHH----HHHhhhhhccCcEEEEEEecCcccCCCCch-hHHHHHHHHHh-CCCCcccccHHHHHHHHHHHHHHHH
Confidence 44332111 01223356889 77776655 34444 67999999999 21344 478999999999999999
Q ss_pred HHHHhcCCcccccCCccccccCCCccccCCccccCchHHHHHHHhcCccc--cccc-ceEEcCCCCCccceEEEEEe-ec
Q 002309 330 ESFFNQGGKISFSNDSRLKTMEGGNLHLGAMSIFDDGMLLLGNILQSNLV--GLTG-PLKFNSDRSLIHAAYDIINV-IG 405 (938)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~l~~~~f~--G~tG-~v~F~~~g~~~~~~~~I~~~-~~ 405 (938)
+++...+. ...+++.+.++|++.+|+ |++| +++|+++|++....+.|+++ ++
T Consensus 305 ~~a~~~g~------------------------~~~~~~~v~~aL~~~~~~~~G~~G~~i~f~~~~~~~~~~~~i~~~~~~ 360 (391)
T 3eaf_A 305 ESVTSQDL------------------------QERGGEALKEALEANTFDLGGITADTIDYEPGFHLAYRKVFIIKLGEN 360 (391)
T ss_dssp TTSCHHHH------------------------HHHTHHHHHHHHHHCCBCSTTCBSSCBCCBTTBCCCCCCEEEEEECTT
T ss_pred HHHHhcCC------------------------CCCCHHHHHHHHHhCCCCCCCccccceeeCCCCCCcceEEEEEEEecC
Confidence 98521110 001489999999998898 9999 99999876667788999999 89
Q ss_pred cceEEEEEeeCCC
Q 002309 406 TGFRMIGYWSNYS 418 (938)
Q Consensus 406 ~~~~~Vg~w~~~~ 418 (938)
++++.|+.|+...
T Consensus 361 G~~~~v~~~~~~~ 373 (391)
T 3eaf_A 361 GELQLMGKFEAPS 373 (391)
T ss_dssp SSEEEEEEECCCT
T ss_pred CEEEEeeeecCcc
Confidence 9999999998654
No 29
>4evq_A Putative ABC transporter subunit, substrate-bindi component; structural genomics, PSI-biology, midwest center for structu genomics; HET: MSE PHB; 1.40A {Rhodopseudomonas palustris} PDB: 4evr_A
Probab=100.00 E-value=5e-36 Score=335.55 Aligned_cols=345 Identities=11% Similarity=0.138 Sum_probs=298.0
Q ss_pred CCeeEEEEEEeeCCC---cchhHHHHHHHHHHHHHhcCCCCCCCCEEEEEEccCCCChHHHHHHHHHHHhc-CcEEEEcC
Q 002309 28 RPAVVNVGALFTLDS---TIGRVAKIAIEEAVKDVNSNSSILHGTKLNITMQSSNCSGFIGMVEALRFMET-DIVAIIGP 103 (938)
Q Consensus 28 ~~~~i~IG~i~~~~~---~~g~~~~~a~~~Av~~iN~~~~il~g~~l~~~~~D~~~~~~~a~~~a~~li~~-~V~aviGp 103 (938)
..++|+||+++|++. ..|.....|+++|++++| +++ +|+++++++.|+++++..+.+.+.+|+++ +|.+||||
T Consensus 13 ~~~~i~IG~~~p~sg~~~~~~~~~~~g~~~a~~~~n--g~~-~g~~~~l~~~d~~~~~~~~~~~~~~l~~~~~v~~iig~ 89 (375)
T 4evq_A 13 QAGALKVGLLLPYSGTYAPLGEAITRGLELYVQSQG--GKL-GGRSISFVKVDDESAPPKATELTTKLIQSEKADVLIGT 89 (375)
T ss_dssp --CCEEEEEEECSSSTTHHHHHHHHHHHHHHHHHTT--TEE-TTEEEEEEEEECTTCHHHHHHHHHCCCCCSCCSEEEEC
T ss_pred hCCCeEEEEEeCCCCcchhcCHHHHHHHHHHHHHhC--CCc-CCEEEEEEEecCCCCHHHHHHHHHHHHhcCCceEEEcC
Confidence 457899999999974 457889999999999998 555 79999999999999999999999999986 99999999
Q ss_pred CChhHHHHHHHhhccCCccEEEcccCCCCCCC-CCCCceEEecCCchHHHHHHHHHHHhcCCcEEEEEEEcCccccchHH
Q 002309 104 QCSTVAHIVSYVSNELQVPLLSFGVTDPTLSS-LQYPFFVRTTQSDSYQMTAVAEMVSYYGWNAVSVIFVDNEYGRNGVS 182 (938)
Q Consensus 104 ~~s~~~~~va~~~~~~~iP~Is~~~~~~~l~~-~~~p~~~r~~ps~~~~~~ai~~~l~~~~w~~vaii~~d~~~g~~~~~ 182 (938)
.++..+.++++++...++|+|++.++++.+++ ..+|++||+.|++..++.++++++.++||++|++|++|+.+|+...+
T Consensus 90 ~~s~~~~~~~~~~~~~~iP~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~ia~i~~~~~~~~~~~~ 169 (375)
T 4evq_A 90 VHSGVAMAMVKIAREDGIPTIVPNAGADIITRAMCAPNVFRTSFANGQIGRATGDAMIKAGLKKAVTVTWKYAAGEEMVS 169 (375)
T ss_dssp SSHHHHHHHHHHHHHHCCCEEESSCCCGGGGTTTCCTTEEESSCCHHHHHHHHHHHHHHTTCCEEEEEEESSHHHHHHHH
T ss_pred CccHHHHHHHHHHHHcCceEEecCCCChhhcccCCCCCEEEeeCChHhHHHHHHHHHHHcCCcEEEEEecCchHHHHHHH
Confidence 99999999999999999999999988888887 34899999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhcceEEEEEeecCCCCCCChhhHHHHHHHHhcCCceEEEEEeChhhHHHHHHHHHHcCCCCCCeEEEEeCcch
Q 002309 183 ALNDKLAERRCRISYKSGIPPESGVNTGYVMDLLVKVALMESRVIVLHVSPSLGFQVFSVAKYLGMMGNGYVWIATDWLA 262 (938)
Q Consensus 183 ~l~~~l~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~lk~~~~~viv~~~~~~~~~~~l~~a~~~g~~~~~~~wi~~~~~~ 262 (938)
.+++++++.|++++....++.+ ..++...++++++.++++|++.+....+..+++++++.|+..+ |+.++ +.
T Consensus 170 ~~~~~l~~~G~~v~~~~~~~~~----~~d~~~~~~~l~~~~~dai~~~~~~~~a~~~~~~~~~~g~~vp---~~~~~-~~ 241 (375)
T 4evq_A 170 GFKKSFTAGKGEVVKDITIAFP----DVEFQSALAEIASLKPDCVYAFFSGGGALKFIKDYAAANLGIP---LWGPG-FL 241 (375)
T ss_dssp HHHHHHHHTTCEEEEEEEECTT----CCCCHHHHHHHHHHCCSEEEEECCTHHHHHHHHHHHHTTCCCC---EEEEG-GG
T ss_pred HHHHHHHHcCCeEEEEEecCCC----CccHHHHHHHHHhcCCCEEEEecCcchHHHHHHHHHHcCCCce---EEecC-cC
Confidence 9999999999999877777765 5678899999999999999999999999999999999998643 55554 32
Q ss_pred hcccCCCCChhhhhccccEEEEEEcCC--CChhhHHHHHHHhhhcCCCCCCCchhhHHhHHHHHHHHHHHHHHhcCCccc
Q 002309 263 YMLDSASLPSETLESMQGVLVLRQHIP--ESDRKKNFLSRWKNLTGGSLGMNSYGLYAYDSVWLLAHAIESFFNQGGKIS 340 (938)
Q Consensus 263 ~~~~~~~~~~~~~~~~~g~~~~~~~~~--~~~~~~~f~~~~~~~~~~~~~~~~~~~~~YDav~~~a~Al~~~~~~~~~~~ 340 (938)
.. . ......+..+|++...++.+ ..+..++|.++|++++ +..|+.+++.+|||++++++|++++...
T Consensus 242 ~~-~---~~~~~g~~~~g~~~~~~~~~~~~~~~~~~f~~~~~~~~--~~~p~~~~~~~yda~~~~~~al~~~g~~----- 310 (375)
T 4evq_A 242 TD-G---VEAAAGPAGDGIKTVLHYVSDLDNAENQAFVKSFEAAY--KIPPDVFAVQGWDAGQLLDAGVKAVGGD----- 310 (375)
T ss_dssp TT-T---THHHHGGGGTTCEEEESCCTTCCSHHHHHHHHHHHHHH--SSCCCHHHHHHHHHHHHHHHHHHHTTTC-----
T ss_pred CH-H---HHHhhhhhcCCeEEeeccCCCCCCHHHHHHHHHHHHHH--CCCCcHHHHHHHHHHHHHHHHHHHhCCC-----
Confidence 11 1 11233456889888877655 4588999999999999 6778899999999999999999985210
Q ss_pred ccCCccccccCCCccccCCccccCchHHHHHHHhcCcccccccceEEcCCCCCccceEEEEEeeccceEEEEEeeCC
Q 002309 341 FSNDSRLKTMEGGNLHLGAMSIFDDGMLLLGNILQSNLVGLTGPLKFNSDRSLIHAAYDIINVIGTGFRMIGYWSNY 417 (938)
Q Consensus 341 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~l~~~~f~G~tG~v~F~~~g~~~~~~~~I~~~~~~~~~~Vg~w~~~ 417 (938)
+.+++.|.++|++++|+|++|+++|+++|++ ...+.|+++++++++.|+.+-+.
T Consensus 311 ----------------------~~~~~~l~~~l~~~~~~g~~G~i~f~~~g~~-~~~~~i~~~~~g~~~~v~~~~~~ 364 (375)
T 4evq_A 311 ----------------------VAKRKELNAAMAAASFASPRGPFKLSAAHNP-VQNFYLRELKGGKSVNLGLAAPA 364 (375)
T ss_dssp ----------------------TTCHHHHHHHHHTCEEEETTEEEEBCTTSCB-CCCEEEEEEETTEEEEEEEEECS
T ss_pred ----------------------CCCHHHHHHHHhcCCcccCCcceeECCCCCc-cccEEEEEEECCCcEEeeehhhc
Confidence 1248999999999999999999999999986 56899999999999999988653
No 30
>4eyg_A Twin-arginine translocation pathway signal; PSI-biology, MCSG, midwest center for structural genomics, transporter; HET: VNL; 1.86A {Rhodopseudomonas palustris} PDB: 4ey3_A* 3t0n_A* 4eyk_A*
Probab=100.00 E-value=7.1e-36 Score=333.41 Aligned_cols=346 Identities=14% Similarity=0.168 Sum_probs=293.8
Q ss_pred CCeeEEEEEEeeCCC---cchhHHHHHHHHHHHHHhcCCCCCCCCEEEEEEccCCCChHHHHHHHHHHHh-cCcEEEEcC
Q 002309 28 RPAVVNVGALFTLDS---TIGRVAKIAIEEAVKDVNSNSSILHGTKLNITMQSSNCSGFIGMVEALRFME-TDIVAIIGP 103 (938)
Q Consensus 28 ~~~~i~IG~i~~~~~---~~g~~~~~a~~~Av~~iN~~~~il~g~~l~~~~~D~~~~~~~a~~~a~~li~-~~V~aviGp 103 (938)
..++|+||+++|++. ..|.....|+++|++++|. ++ +|++|++++.|+++++..+.+.+.+|+. ++|.+||||
T Consensus 3 a~~~i~IG~~~p~sg~~~~~g~~~~~g~~~a~~~~~~--~i-~G~~i~l~~~D~~~~~~~~~~~~~~li~~~~v~~iiG~ 79 (368)
T 4eyg_A 3 AEDTFKVGLIVPMTGGQASTGKQIDNAIKLYIKKHGD--TV-AGKKIEVILKDDAAIPDNTKRLAQELIVNDKVNVIAGF 79 (368)
T ss_dssp -CCEEEEEEEECSSSTTHHHHHHHHHHHHHHHHHHCS--EE-TTEEEEEEEEECTTCHHHHHHHHHHHHHTSCCSEEEEC
T ss_pred CCCcEEEEEEeCCcCcchhccHHHHHHHHHHHHHcCC--CC-CCeEEEEEEeCCCCCHHHHHHHHHHHHhcCCcEEEECC
Confidence 357899999999984 4578899999999999973 35 6999999999999999999999999998 699999999
Q ss_pred CChhHHHHHHHhhccCCccEEEcccCCCCCCCCCCCceEEecCCchHHHHHHHHHHHhcCCcEEEEEEEcCccccchHHH
Q 002309 104 QCSTVAHIVSYVSNELQVPLLSFGVTDPTLSSLQYPFFVRTTQSDSYQMTAVAEMVSYYGWNAVSVIFVDNEYGRNGVSA 183 (938)
Q Consensus 104 ~~s~~~~~va~~~~~~~iP~Is~~~~~~~l~~~~~p~~~r~~ps~~~~~~ai~~~l~~~~w~~vaii~~d~~~g~~~~~~ 183 (938)
.+|..+.++++++...+||+|++.++++.+++. +|++||+.|++..++.++++++.++||++|++|++|+.+|....+.
T Consensus 80 ~~s~~~~~~~~~~~~~~ip~i~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~g~~~ia~i~~~~~~g~~~~~~ 158 (368)
T 4eyg_A 80 GITPAALAAAPLATQAKVPEIVMAAGTSIITER-SPYIVRTSFTLAQSSIIIGDWAAKNGIKKVATLTSDYAPGNDALAF 158 (368)
T ss_dssp SSHHHHHHHHHHHHHHTCCEEESSCCCGGGGGG-CTTEEESSCCHHHHHHHHHHHHHHTTCCEEEEEEESSHHHHHHHHH
T ss_pred CccHHHHHHHHHHHhCCceEEeccCCChhhccC-CCCEEEecCChHHHHHHHHHHHHHcCCCEEEEEecCchHhHHHHHH
Confidence 999999999999999999999998888777765 8999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhcceEEEEEeecCCCCCCChhhHHHHHHHHhcCCceEEEEEeChhhHHHHHHHHHHcCCCCCCeEEEEeCcchh
Q 002309 184 LNDKLAERRCRISYKSGIPPESGVNTGYVMDLLVKVALMESRVIVLHVSPSLGFQVFSVAKYLGMMGNGYVWIATDWLAY 263 (938)
Q Consensus 184 l~~~l~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~lk~~~~~viv~~~~~~~~~~~l~~a~~~g~~~~~~~wi~~~~~~~ 263 (938)
+++.+++.|++++....++.+ ..|+...++++++.++++|++.+....+..++++++++|+..+++.|+.++++..
T Consensus 159 ~~~~l~~~g~~v~~~~~~~~~----~~d~~~~~~~l~~~~~d~v~~~~~~~~a~~~~~~~~~~g~~~~~v~~~~~~~~~~ 234 (368)
T 4eyg_A 159 FKERFTAGGGEIVEEIKVPLA----NPDFAPFLQRMKDAKPDAMFVFVPAGQGGNFMKQFAERGLDKSGIKVIGPGDVMD 234 (368)
T ss_dssp HHHHHHHTTCEEEEEEEECSS----SCCCHHHHHHHHHHCCSEEEEECCTTCHHHHHHHHHHTTGGGTTCEEEEETTTTC
T ss_pred HHHHHHHcCCEEEEEEeCCCC----CCcHHHHHHHHHhcCCCEEEEeccchHHHHHHHHHHHcCCCcCCceEEecCcccC
Confidence 999999999999888878765 5688899999999999999998888899999999999999765577888774332
Q ss_pred cccCCCCChhhhhccccEEEEEEcCC--CChhhHHHHHHHhhhcCCCCCCCchhhHHhHHHHHHHHHHHHHHhcCCcccc
Q 002309 264 MLDSASLPSETLESMQGVLVLRQHIP--ESDRKKNFLSRWKNLTGGSLGMNSYGLYAYDSVWLLAHAIESFFNQGGKISF 341 (938)
Q Consensus 264 ~~~~~~~~~~~~~~~~g~~~~~~~~~--~~~~~~~f~~~~~~~~~~~~~~~~~~~~~YDav~~~a~Al~~~~~~~~~~~~ 341 (938)
.... ....+..+|++...++.+ ..+..++|.++| +++ ++..++.+++.+|||++++++|++++.. .
T Consensus 235 ~~~~----~~~g~~~~g~~~~~~~~~~~~~~~~~~f~~~~-~~~-~~~~p~~~~~~~yda~~~~~~al~~~g~---~--- 302 (368)
T 4eyg_A 235 DDLL----NSMGDAALGVVTAHMYSAAHPSAMNKEFVAAY-KKE-FGQRPGFMAVGGYDGIHLVFEALKKTGG---K--- 302 (368)
T ss_dssp HHHH----TTCCGGGTTCEEEESCCTTCCSHHHHHHHHHH-HHH-HSSCCCHHHHHHHHHHHHHHHHHHHTTT---C---
T ss_pred HHHH----HhhhhhhCCeEEeeecCCCCCCHHHHHHHHHH-HHh-CCCCCChHHHHHHHHHHHHHHHHHHhCC---C---
Confidence 2111 112245688887776654 468899999999 777 2457889999999999999999999521 1
Q ss_pred cCCccccccCCCccccCCccccCchHHHHHHHhcCcccccccceEEc-CCCCCccceEEEEEee--ccceE--EEEEeeC
Q 002309 342 SNDSRLKTMEGGNLHLGAMSIFDDGMLLLGNILQSNLVGLTGPLKFN-SDRSLIHAAYDIINVI--GTGFR--MIGYWSN 416 (938)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~l~~~~f~G~tG~v~F~-~~g~~~~~~~~I~~~~--~~~~~--~Vg~w~~ 416 (938)
.+++.|.++|++++|+|++|+++|| ++|+ ....+.|.+++ +++|+ .++.|.+
T Consensus 303 ----------------------~~~~~l~~al~~~~~~g~~G~i~f~~~~~~-~~~~~~i~~~~~~~G~~~~v~~~~~~~ 359 (368)
T 4eyg_A 303 ----------------------ADGDSLIAAMKGMKWESPRGPISIDPETRD-IVQNIYIRKVEKVDGELYNIEFAKFDA 359 (368)
T ss_dssp ----------------------CSHHHHHHHHTTCEEEETTEEEEECTTTCC-EEEEEEEEEEEEETTEEEEEEEEEEEE
T ss_pred ----------------------CCHHHHHHHHHcCCcccCCCCeEECcccCC-cccceEEEEEEecCCeEEEEEeecccc
Confidence 1489999999999999999999999 6776 56778899998 77774 4555544
No 31
>3n0x_A Possible substrate binding protein of ABC transpo system; receptor family ligand binding region, structural genomics; HET: MSE; 1.50A {Rhodopseudomonas palustris} PDB: 3nnd_B
Probab=100.00 E-value=2.1e-36 Score=338.03 Aligned_cols=330 Identities=11% Similarity=0.105 Sum_probs=273.6
Q ss_pred eeEEEEEEeeCCC---cchhHHHHHHHHHHHHHhc-CCCCCCCCEEEEEEccCCCChHHHHHHHHHHHhc-CcEEEEcCC
Q 002309 30 AVVNVGALFTLDS---TIGRVAKIAIEEAVKDVNS-NSSILHGTKLNITMQSSNCSGFIGMVEALRFMET-DIVAIIGPQ 104 (938)
Q Consensus 30 ~~i~IG~i~~~~~---~~g~~~~~a~~~Av~~iN~-~~~il~g~~l~~~~~D~~~~~~~a~~~a~~li~~-~V~aviGp~ 104 (938)
++|+||+++|++. ..|.....|+++|++++|+ .+|+ .|++|+++++|+++++..++..+++|+.+ +|.+||||.
T Consensus 3 ~~i~IG~~~plsG~~a~~g~~~~~g~~lA~~~iN~~~ggi-~G~~i~l~~~D~~~~~~~a~~~~~~li~~~~v~aiiG~~ 81 (374)
T 3n0x_A 3 DDLKIALIYGKTGPLEAYAKQTETGLMMGLEYATKGTMTL-DGRKIVVITKDDQSKPDLSKAALAEAYQDDGADIAIGTS 81 (374)
T ss_dssp -CEEEEEEECCSSTTHHHHHHHHHHHHHHHHHHTTTCCEE-TTEEEEEEEEECTTCHHHHHHHHHHHHHTSCCSEEEECS
T ss_pred CCEEEEEecCCCCchhhhCHHHHHHHHHHHHHHhccCCCc-CCEEEEEEEecCCCCHHHHHHHHHHHHHhCCceEEEcCC
Confidence 5799999999984 4578899999999999998 6777 59999999999999999999999999985 999999999
Q ss_pred ChhHHHHHHHhhccCCccEEEcccCCCCCCC-CCCCceEEecCCchHHHHHHHHHHHhcCCcEEEEEEEcCccccchHHH
Q 002309 105 CSTVAHIVSYVSNELQVPLLSFGVTDPTLSS-LQYPFFVRTTQSDSYQMTAVAEMVSYYGWNAVSVIFVDNEYGRNGVSA 183 (938)
Q Consensus 105 ~s~~~~~va~~~~~~~iP~Is~~~~~~~l~~-~~~p~~~r~~ps~~~~~~ai~~~l~~~~w~~vaii~~d~~~g~~~~~~ 183 (938)
+|..+.+++++++.+++|+|++.++++.+++ ..+||+||+.|++..++.+++.++++++| +|++|++|++||+...+.
T Consensus 82 ~s~~~~a~~~~~~~~~ip~i~~~~~~~~~~~~~~~~~~fr~~~~~~~~~~~~~~~~~~~~~-~v~ii~~~~~~g~~~~~~ 160 (374)
T 3n0x_A 82 SSAAALADLPVAEENKKILIVEPAVADQITGEKWNRYIFRTGRNSSQDAISNAVAIGKQGV-TIATLAQDYAFGRDGVAA 160 (374)
T ss_dssp SHHHHHHHHHHHHHHTCCEEECSCCCGGGGTTTCCTTEEECSCCHHHHHHHHHHHHCCTTE-EEEEEEESSHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHcCccEEEcCCCchhhhcCCCCCeEEEccCCchhHHHHHHHHHhccCC-EEEEEeCCchHHHHHHHH
Confidence 9999999999999999999998788888887 45899999999999999999988889998 899999999999999999
Q ss_pred HHHHHhhcceEEEEEeecCCCCCCChhhHHHHHHHHhcCC-----ceEEEEEeChhhHHHHHHHHHHcCCCCCCeEEEEe
Q 002309 184 LNDKLAERRCRISYKSGIPPESGVNTGYVMDLLVKVALME-----SRVIVLHVSPSLGFQVFSVAKYLGMMGNGYVWIAT 258 (938)
Q Consensus 184 l~~~l~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~lk~~~-----~~viv~~~~~~~~~~~l~~a~~~g~~~~~~~wi~~ 258 (938)
+++.+++.|++|+....++.+ ..|+.+++++|+..+ +|+|++.+.+... .+.++.++++...++.+++.
T Consensus 161 ~~~~~~~~G~~vv~~~~~~~~----~~d~~~~l~~i~~~~~~~~~~d~v~~~~~g~~~--~~~~~~~~~~~~~g~~~~~~ 234 (374)
T 3n0x_A 161 FKEALAKTGATLATEEYVPTT----TTDFTAVGQRLFDALKDKPGKKIIWVIWAGGGD--PLTKLQDMDPKRYGIELSTG 234 (374)
T ss_dssp HHHHHTTTTCEEEEEEEECTT----CCCCHHHHHHHHHHHTTCSSEEEEEECCCSSSC--HHHHHHHTCGGGGTEEEEEC
T ss_pred HHHHHHHcCCEEeeeecCCCC----CccHHHHHHHHHhcCCCCCCCCEEEEEecCCcH--HHHHHHHcchhhcCCeeeec
Confidence 999999999999998888876 678999999999988 9999987444222 24556666665555555543
Q ss_pred CcchhcccCCCCChhhhhccccEEEEEEc---CCCChhhHHHHHHHhhhcCCCCCCCchhhHHhHHHHHHHHHHHHHHhc
Q 002309 259 DWLAYMLDSASLPSETLESMQGVLVLRQH---IPESDRKKNFLSRWKNLTGGSLGMNSYGLYAYDSVWLLAHAIESFFNQ 335 (938)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~---~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~YDav~~~a~Al~~~~~~ 335 (938)
+..... ........|+.+...+ .++.+..++|.++|+++| +..|+.+++.+|||++++++|++++..
T Consensus 235 ~~~~~~-------~~~~~~~~g~~~~~~~~~~~~~~~~~~~f~~~y~~~~--g~~p~~~a~~~Yda~~~l~~Al~~ag~- 304 (374)
T 3n0x_A 235 GNILPA-------LAAYKRLPGMEGATYYYYDIPKNPINEWLVTEHQKRF--NAPPDFFTAGGFSAAMAVVTAVQKAKS- 304 (374)
T ss_dssp CCCTTG-------GGGGGGSTTCEEEESCCTTSCCSHHHHHHHHHHHHHH--SSCCCHHHHHHHHHHHHHHHHHHHHTS-
T ss_pred cccchh-------hhhhhhhcCccccceeccCCCCCHHHHHHHHHHHHHH--CCCCChhHHHHHHHHHHHHHHHHHhCC-
Confidence 321111 1111344566555443 345688899999999999 677889999999999999999999621
Q ss_pred CCcccccCCccccccCCCccccCCccccCchHHHHHHHhcCcccccccceEEcCCCCCccceEEEEEeec
Q 002309 336 GGKISFSNDSRLKTMEGGNLHLGAMSIFDDGMLLLGNILQSNLVGLTGPLKFNSDRSLIHAAYDIINVIG 405 (938)
Q Consensus 336 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~l~~~~f~G~tG~v~F~~~g~~~~~~~~I~~~~~ 405 (938)
.++..|.++|++++|+|++|+++|++++......+.|++++.
T Consensus 305 ----------------------------~~~~~v~~aL~~~~~~g~~G~i~f~~~~~~~~~~~~i~~~~~ 346 (374)
T 3n0x_A 305 ----------------------------TDTEKLIAAMEGMEFDTPKGKMVFRKEDHQALQSMYHFKVKV 346 (374)
T ss_dssp ----------------------------CCHHHHHHHHTTCEEEETTEEEEECTTTCBEECCEEEEEEEC
T ss_pred ----------------------------CCHHHHHHHHhcCCccCCCCCEEECcccCccccceEEEEEEe
Confidence 148999999999999999999999964433567888888874
No 32
>3lop_A Substrate binding periplasmic protein; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 1.55A {Ralstonia solanacearum}
Probab=100.00 E-value=7.5e-36 Score=332.50 Aligned_cols=338 Identities=12% Similarity=0.091 Sum_probs=289.5
Q ss_pred CeeEEEEEEeeCC---CcchhHHHHHHHHHHHHHhcCCCCCCCCEEEEEEccCCCChHHHHHHHHHHHhc-CcEEEEcCC
Q 002309 29 PAVVNVGALFTLD---STIGRVAKIAIEEAVKDVNSNSSILHGTKLNITMQSSNCSGFIGMVEALRFMET-DIVAIIGPQ 104 (938)
Q Consensus 29 ~~~i~IG~i~~~~---~~~g~~~~~a~~~Av~~iN~~~~il~g~~l~~~~~D~~~~~~~a~~~a~~li~~-~V~aviGp~ 104 (938)
+++|+||+++|++ +..|.....|+++|++++|++||++ |+++++++.|+++++..+.+.+.+|+.+ +|.+||||.
T Consensus 3 ~~~i~IG~~~p~sG~~~~~g~~~~~g~~~a~~~~N~~ggi~-G~~i~l~~~D~~~~~~~~~~~~~~l~~~~~v~~iig~~ 81 (364)
T 3lop_A 3 LADISVIQSLPLSGSQAVTGRALNAGARLYFDWLNLNGGIN-GETIRLVARDDEQKIEQTVRNVRDMARVDNPVALLTVV 81 (364)
T ss_dssp --CEEEEEEECSSSTTHHHHHHHHHHHHHHHHHHHHTTTBT-TBCEEEEEEECTTCHHHHHHHHHHHHHHSCEEEEECCC
T ss_pred CCeEEEEEEecCCCcchhccHHHHHHHHHHHHHHHhcCCcC-CeEEEEEEeCCCCCHHHHHHHHHHHHhhcCcEEEEecC
Confidence 4689999999997 3467788999999999999999995 9999999999999999999999999996 999999999
Q ss_pred ChhHHHHHHH--hhccCCccEEEcccCCCCCCCCCCCceEEecCCchHHHHHHHHHHHhcCCcEEEEEEEcCccccchHH
Q 002309 105 CSTVAHIVSY--VSNELQVPLLSFGVTDPTLSSLQYPFFVRTTQSDSYQMTAVAEMVSYYGWNAVSVIFVDNEYGRNGVS 182 (938)
Q Consensus 105 ~s~~~~~va~--~~~~~~iP~Is~~~~~~~l~~~~~p~~~r~~ps~~~~~~ai~~~l~~~~w~~vaii~~d~~~g~~~~~ 182 (938)
+|..+.++++ ++...+||+|++.++++.+++ +|++||+.|++..++.++++++.++||++|++|+.+++||....+
T Consensus 82 ~s~~~~~~~~~~~~~~~~iP~v~~~~~~~~~~~--~~~~f~~~~~~~~~~~~~~~~l~~~g~~~iaii~~~~~~g~~~~~ 159 (364)
T 3lop_A 82 GTANVEALMREGVLAEARLPLVGPATGASSMTT--DPLVFPIKASYQQEIDKMITALVTIGVTRIGVLYQEDALGKEAIT 159 (364)
T ss_dssp CHHHHHHHHHTTHHHHHTCCEESCSCCCGGGGS--CTTEECCSCCHHHHHHHHHHHHHHTTCCCEEEEEETTHHHHHHHH
T ss_pred CCHHHHhhCchhhHHhcCCcEEEcccCcHhhcc--CCcEEEeCCChHHHHHHHHHHHHHcCCceEEEEEeCchhhHHHHH
Confidence 9999999999 999999999998888877765 899999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhcceEEEEEeecCCCCCCChhhHHHHHHHHhcCCceEEEEEeChhhHHHHHHHHHHcCCCCCCeEEEEeCcch
Q 002309 183 ALNDKLAERRCRISYKSGIPPESGVNTGYVMDLLVKVALMESRVIVLHVSPSLGFQVFSVAKYLGMMGNGYVWIATDWLA 262 (938)
Q Consensus 183 ~l~~~l~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~lk~~~~~viv~~~~~~~~~~~l~~a~~~g~~~~~~~wi~~~~~~ 262 (938)
.+++++++.|++++....++.+ ..++...+++++..++++|++.+....+..++++++++|+..+ |+..+++.
T Consensus 160 ~~~~~~~~~G~~v~~~~~~~~~----~~d~~~~~~~l~~~~~d~v~~~~~~~~a~~~~~~~~~~g~~~~---~i~~~~~~ 232 (364)
T 3lop_A 160 GVERTLKAHALAITAMASYPRN----TANVGPAVDKLLAADVQAIFLGATAEPAAQFVRQYRARGGEAQ---LLGLSSID 232 (364)
T ss_dssp HHHHHHHTTTCCCSEEEEECTT----SCCCHHHHHHHHHSCCSEEEEESCHHHHHHHHHHHHHTTCCCE---EEECTTSC
T ss_pred HHHHHHHHcCCcEEEEEEecCC----CccHHHHHHHHHhCCCCEEEEecCcHHHHHHHHHHHHcCCCCe---EEEeccCC
Confidence 9999999999998877777765 6788999999999999999999999999999999999998654 66666543
Q ss_pred hcccCCCCChhhh-hccccEEEEEE----cCCCChhhHHHHHHHhhhcCCCC--CCCchhhHHhHHHHHHHHHHHHHHhc
Q 002309 263 YMLDSASLPSETL-ESMQGVLVLRQ----HIPESDRKKNFLSRWKNLTGGSL--GMNSYGLYAYDSVWLLAHAIESFFNQ 335 (938)
Q Consensus 263 ~~~~~~~~~~~~~-~~~~g~~~~~~----~~~~~~~~~~f~~~~~~~~~~~~--~~~~~~~~~YDav~~~a~Al~~~~~~ 335 (938)
..... .... +..+|++.... ..+..+..++|.++|++++ +. .|+.+++.+|||+++++.|++++.
T Consensus 233 ~~~~~----~~~g~~~~~g~~~~~~~~~~~~~~~~~~~~f~~~~~~~~--~~~~~p~~~a~~~yda~~~~~~al~~ag-- 304 (364)
T 3lop_A 233 PGILQ----KVAGLDAVRGYSLALVMPNPGKSVNPVIREFNRARAAVG--AKDVDLSFRAVEGFVAAKVLAEAIRRAG-- 304 (364)
T ss_dssp HHHHH----HHHCHHHHTTCEEEECSCCTTCTTSHHHHHHHHHHHHHT--CTTCCCCHHHHHHHHHHHHHHHHHHHHC--
T ss_pred hHHHH----HHhChhhcCCeEEEEEeCCCCCCCCHHHHHHHHHHHHhc--CCCCCCChHHHHHHHHHHHHHHHHHHhC--
Confidence 32111 1223 55778776652 2256788999999999998 44 788999999999999999999962
Q ss_pred CCcccccCCccccccCCCccccCCccccCchHHHHHHHhcC-cccc-cccceEEcCCCCCccceEEEEEeeccceEE
Q 002309 336 GGKISFSNDSRLKTMEGGNLHLGAMSIFDDGMLLLGNILQS-NLVG-LTGPLKFNSDRSLIHAAYDIINVIGTGFRM 410 (938)
Q Consensus 336 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~l~~~-~f~G-~tG~v~F~~~g~~~~~~~~I~~~~~~~~~~ 410 (938)
+. .+++.+.++|+++ .|+| .+|+++|+++++.......|.+++++++.+
T Consensus 305 -~~-------------------------~~~~~v~~aL~~~~~~~~~~~g~i~f~~~~~~~~~~~~i~~~~~~~~~~ 355 (364)
T 3lop_A 305 -PK-------------------------PTREQVRHALTELRDYDVGGGFTVDFTDRSRPGSHYIELGVVGPNGLVI 355 (364)
T ss_dssp -SS-------------------------CCHHHHHHHHHTCEEEESSTTCEEECSSTTSCSCCCCEEEEECTTSCEE
T ss_pred -CC-------------------------CCHHHHHHHHHhcCCccCCCCeeeecCCCCcCCcceEEEEEEcCCCccc
Confidence 11 1489999999999 6999 999999998887666677888888776544
No 33
>3sg0_A Extracellular ligand-binding receptor; structural genomics, PSI-biology; HET: 173; 1.20A {Rhodopseudomonas palustris} PDB: 4dqd_A*
Probab=100.00 E-value=9.8e-35 Score=326.49 Aligned_cols=343 Identities=14% Similarity=0.194 Sum_probs=285.2
Q ss_pred CCeeEEEEEEeeCCCc---chhHHHHHHHHHHHHHhcCCCCCCCCEEEEEEccCCCChHHHHHHHHHHHhc-CcEEEEcC
Q 002309 28 RPAVVNVGALFTLDST---IGRVAKIAIEEAVKDVNSNSSILHGTKLNITMQSSNCSGFIGMVEALRFMET-DIVAIIGP 103 (938)
Q Consensus 28 ~~~~i~IG~i~~~~~~---~g~~~~~a~~~Av~~iN~~~~il~g~~l~~~~~D~~~~~~~a~~~a~~li~~-~V~aviGp 103 (938)
.+++|+||+++|++.. .|.....|+++|++++| |+++++++.|+++++..+.+.+.+|+++ +|.+||||
T Consensus 24 a~~~i~IG~~~p~sg~~~~~g~~~~~g~~~a~~~i~-------G~~i~l~~~d~~~~~~~~~~~~~~l~~~~~v~~iig~ 96 (386)
T 3sg0_A 24 AQAEIKIGITMSASGPGAALGQPQSKTVAALPKEIG-------GEKVTYFALDDESDPTKAAQNARKLLSEEKVDVLIGS 96 (386)
T ss_dssp -CCCEEEEEEECCSSTTHHHHHHHHHHGGGSCSEET-------TEEEEEEEEECTTCHHHHHHHHHHHHHTSCCSEEECC
T ss_pred CCCceEEEEEeccCCchhhhcHHHHHHHHHHHHHcC-------CEEEEEEEecCCCCHHHHHHHHHHHHhhcCceEEECC
Confidence 4568999999999843 57788999999999883 7999999999999999999999999998 89999999
Q ss_pred CChhHHHHHHHhhccCCccEEEcccCCCCCC--CCCCCceEEecCCchHHHHHHHHHHHhcCCcEEEEEEEcCccccchH
Q 002309 104 QCSTVAHIVSYVSNELQVPLLSFGVTDPTLS--SLQYPFFVRTTQSDSYQMTAVAEMVSYYGWNAVSVIFVDNEYGRNGV 181 (938)
Q Consensus 104 ~~s~~~~~va~~~~~~~iP~Is~~~~~~~l~--~~~~p~~~r~~ps~~~~~~ai~~~l~~~~w~~vaii~~d~~~g~~~~ 181 (938)
.++..+.++++++...+||+|++.++++.++ ...+|++||+.|++..++.++++++.++||++|++|++|+.+|+...
T Consensus 97 ~~s~~~~~~~~~~~~~~ip~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~ia~i~~~~~~~~~~~ 176 (386)
T 3sg0_A 97 SLTPVSLPLIDIAAEAKTPLMTMAAAAILVAPMDERRKWVYKVVPNDDIMAEAIGKYIAKTGAKKVGYIGFSDAYGEGYY 176 (386)
T ss_dssp SSHHHHHHHHHHHHHTTCCEEECCCCGGGTCSCCTTGGGEEECSCCHHHHHHHHHHHHHHTTCCEEEEEEESSHHHHHHH
T ss_pred CCchhHHHHHHHHHhcCCeEEEecCCCccccccCCCCCcEEecCCCcHHHHHHHHHHHHhcCCCEEEEEecCchHHHHHH
Confidence 9999999999999999999999988877776 35689999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhcceEEEEEeecCCCCCCChhhHHHHHHHHhcCCceEEEEEeChhhHHHHHHHHHHcCCCCCCeEEEEeCcc
Q 002309 182 SALNDKLAERRCRISYKSGIPPESGVNTGYVMDLLVKVALMESRVIVLHVSPSLGFQVFSVAKYLGMMGNGYVWIATDWL 261 (938)
Q Consensus 182 ~~l~~~l~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~lk~~~~~viv~~~~~~~~~~~l~~a~~~g~~~~~~~wi~~~~~ 261 (938)
+.+++++++.|++++....++.+ ..++...++++++.++++|++.+.+..+..+++++++.|+..+ ++.++++
T Consensus 177 ~~~~~~l~~~g~~v~~~~~~~~~----~~d~~~~~~~~~~~~~dav~~~~~~~~a~~~~~~~~~~g~~~~---~~~~~~~ 249 (386)
T 3sg0_A 177 KVLAAAAPKLGFELTTHEVYARS----DASVTGQVLKIIATKPDAVFIASAGTPAVLPQKALRERGFKGA---IYQTHGV 249 (386)
T ss_dssp HHHHHHHHHHTCEECCCEEECTT----CSCCHHHHHHHHHTCCSEEEEECCSGGGHHHHHHHHHTTCCSE---EECCGGG
T ss_pred HHHHHHHHHcCCEEEEEEeeCCC----CCcHHHHHHHHHhcCCCEEEEecCcchHHHHHHHHHHcCCCCc---EEecccc
Confidence 99999999999998876677765 5688899999999999999999998999999999999998643 5655544
Q ss_pred hhcccCCCCChhhhhccccEEEEEEc------CC-CC---hhhHHHHHHHhhhcCCCCCCCchhhHHhHHHHHHHHHHHH
Q 002309 262 AYMLDSASLPSETLESMQGVLVLRQH------IP-ES---DRKKNFLSRWKNLTGGSLGMNSYGLYAYDSVWLLAHAIES 331 (938)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~g~~~~~~~------~~-~~---~~~~~f~~~~~~~~~~~~~~~~~~~~~YDav~~~a~Al~~ 331 (938)
...... ....+..+|++....+ .+ .. +..++|.++|++++ +...++.++..+|||++++++|+++
T Consensus 250 ~~~~~~----~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~-~~~~p~~~~~~~yda~~~~~~al~~ 324 (386)
T 3sg0_A 250 ATEEFI----KLGGKDVEGAIFAGEAFSGAEDMPADSPFRKVKARFVDAYKAAN-GGAAPTIFGVHLWDSMTLVENAIPA 324 (386)
T ss_dssp CSHHHH----HHHGGGGTTCEEEECHHHHGGGSCTTCHHHHHHHHHHHHHHHHT-TTCCCCHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHH----HhhhhhcCCeEEecccccccccCCCCCcchHHHHHHHHHHHHHh-CCCCCChhHHHHHHHHHHHHHHHHH
Confidence 322111 2233567888776542 12 22 45799999999999 2336789999999999999999999
Q ss_pred HHhcCCcccccCCccccccCCCccccCCccccCchHHHHHHHhcC-cccccccceEEcCCCCC--ccceEEEEEeeccce
Q 002309 332 FFNQGGKISFSNDSRLKTMEGGNLHLGAMSIFDDGMLLLGNILQS-NLVGLTGPLKFNSDRSL--IHAAYDIINVIGTGF 408 (938)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~l~~~-~f~G~tG~v~F~~~g~~--~~~~~~I~~~~~~~~ 408 (938)
+.+.... +.+.+++.+.++|+++ +|+|++|+++|+++++. ....+.|+++++++|
T Consensus 325 a~~~~~~----------------------g~~~~~~~~~~al~~~~~~~g~~G~~~f~~~~~~g~~~~~~~i~~~~~G~~ 382 (386)
T 3sg0_A 325 ALKAAKP----------------------GTPEFRAAIRDQIEKSKDLALNNGLSNMTPDNHNGYDERSAFLIEIRDGAF 382 (386)
T ss_dssp HHHHCCT----------------------TSHHHHHHHHHHHTTCCSEEETTEEECCCSSCSSCCCGGGCEEEEEETTEE
T ss_pred hhhccCC----------------------CCcchHHHHHHHHHhccCccccceeEEECCCcCCCCCCCceEEEEEECCEE
Confidence 8654210 1122478999999999 89999999999876543 345688999999988
Q ss_pred EEE
Q 002309 409 RMI 411 (938)
Q Consensus 409 ~~V 411 (938)
+.+
T Consensus 383 ~~~ 385 (386)
T 3sg0_A 383 RLK 385 (386)
T ss_dssp EEC
T ss_pred Eec
Confidence 764
No 34
>1pea_A Amidase operon; gene regulator, receptor, binding protein; 2.10A {Pseudomonas aeruginosa} SCOP: c.93.1.1 PDB: 1qo0_A 1qnl_A
Probab=100.00 E-value=1e-32 Score=309.49 Aligned_cols=347 Identities=12% Similarity=0.050 Sum_probs=282.5
Q ss_pred CCeeEEEEEEeeCCC---cchhHHHHHHHHHHHHHhcCCCCCCCCEEEEEEccCCCChHHHHHHHHHHHh-cCcEEEEcC
Q 002309 28 RPAVVNVGALFTLDS---TIGRVAKIAIEEAVKDVNSNSSILHGTKLNITMQSSNCSGFIGMVEALRFME-TDIVAIIGP 103 (938)
Q Consensus 28 ~~~~i~IG~i~~~~~---~~g~~~~~a~~~Av~~iN~~~~il~g~~l~~~~~D~~~~~~~a~~~a~~li~-~~V~aviGp 103 (938)
.+++++||+++|++. .++.....|+++|++++|++||++ |+++++++.|+++++..+.+.+.+|+. ++|.+||||
T Consensus 4 ~~~~~~IG~~~p~sg~~~~~~~~~~~g~~~a~~~~N~~ggi~-G~~l~l~~~d~~~~~~~~~~~~~~l~~~~~v~~iig~ 82 (385)
T 1pea_A 4 HQERPLIGLLFSETGVTADIERSQRYGALLAVEQLNREGGVG-GRPIETLSQDPGGDPDRYRLCAEDFIRNRGVRFLVGC 82 (385)
T ss_dssp ----CEEEEECCSSSTTHHHHHHHHHHHHHHHHHHHTTTTBT-TBCCEEEEECCTTCHHHHHHHHHHHHHTTCCCEEEEC
T ss_pred CCCCeEEEEEECCCCcchhcCHHHHHHHHHHHHHhccccCCC-CeEEEEEEeCCCCCHHHHHHHHHHHHhhCCcEEEECC
Confidence 356899999999974 357788999999999999999995 999999999999999999999999997 699999999
Q ss_pred CChhHHHHHHHhhccCCccEEEcccCCCCCCCCCCCceEEecCCchHHHHHHHHHHHhcCCcEEEEEEEcCccccchHHH
Q 002309 104 QCSTVAHIVSYVSNELQVPLLSFGVTDPTLSSLQYPFFVRTTQSDSYQMTAVAEMVSYYGWNAVSVIFVDNEYGRNGVSA 183 (938)
Q Consensus 104 ~~s~~~~~va~~~~~~~iP~Is~~~~~~~l~~~~~p~~~r~~ps~~~~~~ai~~~l~~~~w~~vaii~~d~~~g~~~~~~ 183 (938)
.++..+.++++++...++|+|++.+... ...++++||+.+++..++..+++++.+.+|++|++|+.++.+|+...+.
T Consensus 83 ~~s~~~~~~~~~~~~~~iP~v~~~~~~~---~~~~~~~~~v~~~~~~~~~~~~~~l~~~g~~~ia~i~~~~~~~~~~~~~ 159 (385)
T 1pea_A 83 YMSHTRKAVMPVVERADALLCYPTPYEG---FEYSPNIVYGGPAPNQNSAPLAAYLIRHYGERVVFIGSDYIYPRESNHV 159 (385)
T ss_dssp CSHHHHHHHHHHHHHTTCEEEECSCCCC---CCCCTTEEECSCCGGGTHHHHHHHHHTTTCSEEEEEEESSHHHHHHHHH
T ss_pred CchHHHHHHHHHHHhcCceEEECCcccC---ccCCCCEEEecCChHHhHHHHHHHHHHccCcEEEEEeCCChHHHHHHHH
Confidence 9998888899999999999999765421 1246899999999999999999999999999999999988899999999
Q ss_pred HHHHHhhcceEEEEEeecCCCCCCChhhHHHHHHHHhcCCceEEEEEeChhhHHHHHHHHHHcCCCCCCeEEEEeCcchh
Q 002309 184 LNDKLAERRCRISYKSGIPPESGVNTGYVMDLLVKVALMESRVIVLHVSPSLGFQVFSVAKYLGMMGNGYVWIATDWLAY 263 (938)
Q Consensus 184 l~~~l~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~lk~~~~~viv~~~~~~~~~~~l~~a~~~g~~~~~~~wi~~~~~~~ 263 (938)
+++++++.|+++.....++.. ....++...++++++.++++|++.+....+..++++++++|+....+.++..++...
T Consensus 160 ~~~~l~~~G~~v~~~~~~~~~--~~~~d~~~~~~~l~~~~pdaI~~~~~~~~a~~~~~~~~~~G~~~~~~~~~~~~~~~~ 237 (385)
T 1pea_A 160 MRHLYRQHGGTVLEEIYIPLY--PSDDDLQRAVERIYQARADVVFSTVVGTGTAELYRAIARRYGDGRRPPIASLTTSEA 237 (385)
T ss_dssp HHHHHHHTTCEEEEEEEECSS--CCHHHHHHHHHHHHHHTCSEEEEECCTHHHHHHHHHHHHHHCSSCCCCEEESSCCHH
T ss_pred HHHHHHHcCCEEEEEEeecCC--CCcchHHHHHHHHHHCCCCEEEEecccccHHHHHHHHHHcCCCcCCceEEecccchH
Confidence 999999999998876556542 237889999999998899999998878889999999999998654444554432221
Q ss_pred cccCCCCChhhhhccccEEEEEEcCC--CChhhHHHHHHHhhhcCCCCCCCchhhHHhHHHHHHHHHHHHHHhcCCcccc
Q 002309 264 MLDSASLPSETLESMQGVLVLRQHIP--ESDRKKNFLSRWKNLTGGSLGMNSYGLYAYDSVWLLAHAIESFFNQGGKISF 341 (938)
Q Consensus 264 ~~~~~~~~~~~~~~~~g~~~~~~~~~--~~~~~~~f~~~~~~~~~~~~~~~~~~~~~YDav~~~a~Al~~~~~~~~~~~~ 341 (938)
.+.. ...+..+|++...++.+ ..+..++|.++|+++|+....++.+++.+|||++++++|++++..
T Consensus 238 ~~~~-----~~~~~~~g~~~~~~~~~~~~~~~~~~f~~~~~~~~g~~~~~~~~~~~~yda~~~~~~Al~~ag~------- 305 (385)
T 1pea_A 238 EVAK-----MESDVAEGQVVVAPYFSSIDTPASRAFVQACHGFFPENATITAWAEAAYWQTLLLGRAAQAAGN------- 305 (385)
T ss_dssp HHTT-----SCHHHHTTCEEEESCCTTCSSHHHHHHHHHHHTTSCTTCCCCHHHHHHHHHHHHHHHHHHHHTS-------
T ss_pred HHHh-----cCchhhCCeEEecccccccCCHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHHHHHHhCC-------
Confidence 1111 11235788887776543 567889999999998832235678999999999999999999621
Q ss_pred cCCccccccCCCccccCCccccCchHHHHHHHhcCcccccccceEEcCCCCCccceEEEEEe-eccceEEEEEe
Q 002309 342 SNDSRLKTMEGGNLHLGAMSIFDDGMLLLGNILQSNLVGLTGPLKFNSDRSLIHAAYDIINV-IGTGFRMIGYW 414 (938)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~l~~~~f~G~tG~v~F~~~g~~~~~~~~I~~~-~~~~~~~Vg~w 414 (938)
.+++.+.++|++++|+|++|+++||++++.....+.|.++ ++++++.|...
T Consensus 306 ----------------------~~~~~l~~al~~~~~~g~~G~i~f~~~~~~~~~~~~i~~~~~~g~~~~v~~~ 357 (385)
T 1pea_A 306 ----------------------WRVEDVQRHLYDIDIDAPQGPVRVERQNNHSRLSSRIAEIDARGVFQVRWQS 357 (385)
T ss_dssp ----------------------CCHHHHHHHHTTCCEEETTEEEEECTTTSCEEBCCEEEEECTTSCEEEEEEC
T ss_pred ----------------------CCHHHHHHHHhhCcccCCCCCeEEcCCCCccccceEEEEEcCCCcEEEeecC
Confidence 1389999999999999999999999855445667889999 68888888654
No 35
>3snr_A Extracellular ligand-binding receptor; structural genomics, APC102214, PSI-biology, midwest center structural genomics, MCSG; HET: MSE TYR PHE; 1.49A {Rhodopseudomonas palustris} PDB: 3uk0_A* 3t23_A* 3ukj_A* 4eyo_A* 4eyq_A* 3tx6_A* 4f8j_A* 4fb4_A*
Probab=100.00 E-value=3.2e-33 Score=311.16 Aligned_cols=341 Identities=16% Similarity=0.157 Sum_probs=283.2
Q ss_pred CCeeEEEEEEeeCCC---cchhHHHHHHHHHHHHHhcCCCCCCCCEEEEEEccCCCChHHHHHHHHHHHhc-CcEEEEcC
Q 002309 28 RPAVVNVGALFTLDS---TIGRVAKIAIEEAVKDVNSNSSILHGTKLNITMQSSNCSGFIGMVEALRFMET-DIVAIIGP 103 (938)
Q Consensus 28 ~~~~i~IG~i~~~~~---~~g~~~~~a~~~Av~~iN~~~~il~g~~l~~~~~D~~~~~~~a~~~a~~li~~-~V~aviGp 103 (938)
.+++|+||+++|++. .+|.....|+++|++++| |+++++++.|+++++..+.+.+.+|+.+ +|.+||||
T Consensus 4 a~~~i~IG~~~p~sg~~~~~g~~~~~g~~~a~~~i~-------g~~i~l~~~d~~~~~~~~~~~~~~l~~~~~v~~iig~ 76 (362)
T 3snr_A 4 ETNEITVGISVTTTGPAAALGIPERNALEFVVKEIS-------GHPIKIIVLDDGGDPTAATTNARRFVTESKADVIMGS 76 (362)
T ss_dssp CCCCEEEEEEECCSSTTHHHHHHHHHGGGGSCSEET-------TEEEEEEEEECTTCHHHHHHHHHHHHHTSCCSEEEEC
T ss_pred CCCCeEEEEEecccCchhhcCHHHHHHHHHHHHHhC-------CeEEEEEEecCCCCHHHHHHHHHHHHhccCceEEEcC
Confidence 456899999999984 356778999999999983 7999999999999999999999999998 89999999
Q ss_pred CChhHHHHHHHhhccCCccEEEcccCCCCCCCCCCCceEEecCCchHHHHHHHHHHHhcCCcEEEEEEEcCccccchHHH
Q 002309 104 QCSTVAHIVSYVSNELQVPLLSFGVTDPTLSSLQYPFFVRTTQSDSYQMTAVAEMVSYYGWNAVSVIFVDNEYGRNGVSA 183 (938)
Q Consensus 104 ~~s~~~~~va~~~~~~~iP~Is~~~~~~~l~~~~~p~~~r~~ps~~~~~~ai~~~l~~~~w~~vaii~~d~~~g~~~~~~ 183 (938)
.++..+.++++++...++|+|++.++ + +....+|++||+.|++..++.++++++.++||++|++|+.++.+|+...+.
T Consensus 77 ~~s~~~~~~~~~~~~~~ip~v~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~ia~i~~~~~~~~~~~~~ 154 (362)
T 3snr_A 77 SVTPPSVAISNVANEAQIPHIALAPL-P-ITPERAKWSVVMPQPIPIMGKVLYEHMKKNNVKTVGYIGYSDSYGDLWFND 154 (362)
T ss_dssp SSHHHHHHHHHHHHHHTCCEEESSCC-C-CCTTTTTTEEECSCCHHHHHHHHHHHHHHTTCCEEEEEEESSHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHcCccEEEecCC-c-cccCCCCcEEecCCChHHHHHHHHHHHHhcCCCEEEEEecCchHHHHHHHH
Confidence 99999999999999999999998776 4 334568999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhcceEEEEEeecCCCCCCChhhHHHHHHHHhcCCceEEEEEeChhhHHHHHHHHHHcCCCCCCeEEEEeCcchh
Q 002309 184 LNDKLAERRCRISYKSGIPPESGVNTGYVMDLLVKVALMESRVIVLHVSPSLGFQVFSVAKYLGMMGNGYVWIATDWLAY 263 (938)
Q Consensus 184 l~~~l~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~lk~~~~~viv~~~~~~~~~~~l~~a~~~g~~~~~~~wi~~~~~~~ 263 (938)
+++++++.|++++....++.+ ..++...++++++.++++|++.+....+..+++++++.|+..+ ++...++..
T Consensus 155 ~~~~l~~~g~~v~~~~~~~~~----~~~~~~~~~~l~~~~~dav~~~~~~~~a~~~~~~~~~~g~~~p---~i~~~g~~~ 227 (362)
T 3snr_A 155 LKKQGEAMGLKIVGEERFARP----DTSVAGQALKLVAANPDAILVGASGTAAALPQTTLRERGYNGL---IYQTHGAAS 227 (362)
T ss_dssp HHHHHHHTTCEEEEEEEECTT----CSCCHHHHHHHHHHCCSEEEEECCHHHHHHHHHHHHHTTCCSE---EEECGGGCS
T ss_pred HHHHHHHcCCEEEEEeecCCC----CCCHHHHHHHHHhcCCCEEEEecCcchHHHHHHHHHHcCCCcc---EEeccCcCc
Confidence 999999999998877777765 5678889999999999999999889999999999999998654 455554432
Q ss_pred cccCCCCChhhhhccccEEEEEEc----------CCCChhhHHHHHHHhhhcCCCCCCCchhhHHhHHHHHHHHHHHHHH
Q 002309 264 MLDSASLPSETLESMQGVLVLRQH----------IPESDRKKNFLSRWKNLTGGSLGMNSYGLYAYDSVWLLAHAIESFF 333 (938)
Q Consensus 264 ~~~~~~~~~~~~~~~~g~~~~~~~----------~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~YDav~~~a~Al~~~~ 333 (938)
.... .......+|++....+ .|..+..++|.++|++++ +...++.++..+|||++++++|++++.
T Consensus 228 ~~~~----~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~-~~~~p~~~~~~~yda~~~~~~al~~a~ 302 (362)
T 3snr_A 228 MDFI----RIAGKSAEGVLMASGPVMDPEGQDDTALTKKPGMALVKVYEEKY-GPSSRSQFAGHSYDAFKVLERVVPVAL 302 (362)
T ss_dssp HHHH----HHHGGGGTTCEEEECGGGCSTTSCTTCTTHHHHHHHHHHHHHHH-CTTCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHH----HHhHHHhCCCEEecccccccccCCCcCcccHHHHHHHHHHHHHh-CCCCCCchhHhHHHHHHHHHHHHHHhh
Confidence 2111 2233567888776642 122356899999999999 233678999999999999999999986
Q ss_pred hcCCcccccCCccccccCCCccccCCccccCchHHHHHHHhcC-cccccccceEEcCCCCC--ccceEEEEEeeccceEE
Q 002309 334 NQGGKISFSNDSRLKTMEGGNLHLGAMSIFDDGMLLLGNILQS-NLVGLTGPLKFNSDRSL--IHAAYDIINVIGTGFRM 410 (938)
Q Consensus 334 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~l~~~-~f~G~tG~v~F~~~g~~--~~~~~~I~~~~~~~~~~ 410 (938)
+.... +.+.++..+.++|+++ +|+|++|+++|++++++ ....+.|+++++++++.
T Consensus 303 ~~~~~----------------------g~~~~~~~~~~al~~~~~~~g~~G~~~f~~~~~~g~~~~~~~i~~~~~G~~~~ 360 (362)
T 3snr_A 303 KKAKP----------------------GTQEFREALREAFLTEKDIAASQGVYNFTETDRYGLDDRSRILLTVKNGKYVI 360 (362)
T ss_dssp HHCCT----------------------TSHHHHHHHHHHHHHCCCEECSSCEECCCSSCSSCCCGGGCEEEEEETTEEEE
T ss_pred ccccC----------------------CCcchHHHHHHHHHhcCCcccceeeEEeCCCCCCCCCCCCeEEEEEECCEEEE
Confidence 54210 1122489999999999 89999999999987443 34668999999998876
Q ss_pred E
Q 002309 411 I 411 (938)
Q Consensus 411 V 411 (938)
|
T Consensus 361 v 361 (362)
T 3snr_A 361 V 361 (362)
T ss_dssp C
T ss_pred c
Confidence 4
No 36
>2h4a_A YRAM (HI1655); perplasmic binding protein, lipoprotein; 1.35A {Haemophilus influenzae} PDB: 3ckm_A
Probab=99.95 E-value=7.9e-27 Score=251.48 Aligned_cols=307 Identities=11% Similarity=0.076 Sum_probs=243.5
Q ss_pred EEEEEeeCC---CcchhHHHHHHHHHHHHHhcCCCCCCCCEEEEEEccCCCChHHHHHHHHHHHhcCcEEEEcCCChhHH
Q 002309 33 NVGALFTLD---STIGRVAKIAIEEAVKDVNSNSSILHGTKLNITMQSSNCSGFIGMVEALRFMETDIVAIIGPQCSTVA 109 (938)
Q Consensus 33 ~IG~i~~~~---~~~g~~~~~a~~~Av~~iN~~~~il~g~~l~~~~~D~~~~~~~a~~~a~~li~~~V~aviGp~~s~~~ 109 (938)
+||+++|+| +.+|...+.|+++|. .|++++++++|+.+++ +...+.++++++|.+||||.+|..+
T Consensus 2 kIG~llplSG~~a~~G~~~~~G~~lA~----------~G~~i~l~~~D~~~~~--a~~~~~~l~~~~v~~IiGp~~s~~~ 69 (325)
T 2h4a_A 2 QIGLLLPLSGDGQILGTTIQSGFNDAK----------GNSTIPVQVFDTSMNS--VQDIIAQAKQAGIKTLVGPLLKQNL 69 (325)
T ss_dssp CEEEEECCSSTTHHHHHHHHHHHHHHH----------TTCCSCEEEEETTTSC--HHHHHHHHHHTTCCEEECCCSHHHH
T ss_pred cEEEEECCCCccHHHHHHHHHHHHHhc----------cCCCceEEEEECCCCh--HHHHHHHHHHCCCCEEEeeCCHHHH
Confidence 699999999 456889999999986 2789999999999987 5667778888899999999999999
Q ss_pred HHHHHhh-ccCCccEEEcccCCCCCCCCCCCceEEecCCchHHHHHHHHHHHhcCCcEEEEEEEcCccccchHHHHHHHH
Q 002309 110 HIVSYVS-NELQVPLLSFGVTDPTLSSLQYPFFVRTTQSDSYQMTAVAEMVSYYGWNAVSVIFVDNEYGRNGVSALNDKL 188 (938)
Q Consensus 110 ~~va~~~-~~~~iP~Is~~~~~~~l~~~~~p~~~r~~ps~~~~~~ai~~~l~~~~w~~vaii~~d~~~g~~~~~~l~~~l 188 (938)
.++++++ ...+||+|++.+++. .....+.|+||+.| ..+++++++++...|.+++++|+.+++||+...+.|++++
T Consensus 70 ~a~~~~~~~~~~vp~i~~~~~~~-~~~~~~~~~f~~~~--~~~~~~~a~~a~~~g~k~vail~~~~~yG~~~~~~F~~~~ 146 (325)
T 2h4a_A 70 DVILADPAQIQGMDVLALNATPN-SRAIPQLCYYGLSP--EDEAESAANKMWNDGVRNPLVAMPQNDLGQRVGNAFNVRW 146 (325)
T ss_dssp HHHHHCGGGGTTCEEEESCCCSS-CCCCTTEEECCCCH--HHHHHHHHHHHHHTTCCSCEEEEESSHHHHHHHHHHHHHH
T ss_pred HHHHhhhhccCCCcEEECCCCcc-ccCCCCeEEEECCH--HHHHHHHHHHHHHcCCCeEEEEEcCCcHHHHHHHHHHHHH
Confidence 9999998 789999999866542 22233456677554 5578999999988899999999999999999999999999
Q ss_pred hhcceEEEEEeecCCCCCCChhhHHHHHHHHhcCCceEEEEEeChhhHHHHHHHHHHcCCCCCCeEEEEeCcch--hccc
Q 002309 189 AERRCRISYKSGIPPESGVNTGYVMDLLVKVALMESRVIVLHVSPSLGFQVFSVAKYLGMMGNGYVWIATDWLA--YMLD 266 (938)
Q Consensus 189 ~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~lk~~~~~viv~~~~~~~~~~~l~~a~~~g~~~~~~~wi~~~~~~--~~~~ 266 (938)
++.|++|+..+.+... .|+..+|+++ ..++|+|++.+.+..+..+.++++..|.. -..+.++.+. +...
T Consensus 147 ~~~Gg~vv~~~~y~~~-----~d~~~~l~~i-~~~pDaV~~~~~~~~~~~i~~~~~~~g~~---~pl~~~~~~~~~s~~~ 217 (325)
T 2h4a_A 147 QQLAGTDANIRYYNLP-----ADVTYFVQEN-NSNTTALYAVASPTELAEXKGYLTNIVPN---LAIYASSRASASATNT 217 (325)
T ss_dssp HHHHSSCCEEEEESST-----THHHHHHHHS-TTCCCEEEECCCHHHHHHHHHHHTTTCTT---CEEEECGGGCCHHHHT
T ss_pred HHcCCCcceeEecCCH-----HHHHHHHHhc-CCCCCEEEEeCCHHHHhhhhhhHhhcCCC---CCEEEeccccccCCCC
Confidence 9999999888888742 5899999998 47899999999998888888888876543 3466666665 3211
Q ss_pred CCCCChhhhhccccEEEEE-EcC--CCChhhHHHHHHHhhhcCCCCCCCchhhHHhHHHHHHHHHHHHHHhcCCcccccC
Q 002309 267 SASLPSETLESMQGVLVLR-QHI--PESDRKKNFLSRWKNLTGGSLGMNSYGLYAYDSVWLLAHAIESFFNQGGKISFSN 343 (938)
Q Consensus 267 ~~~~~~~~~~~~~g~~~~~-~~~--~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~YDav~~~a~Al~~~~~~~~~~~~~~ 343 (938)
.......++|++... |+. ++.+..++|.++|+..+ .+....+.+|||+.+++++ .++
T Consensus 218 ----~~~~~~~~~Gv~f~~~p~~~~~~~~~~~~f~~~~~~~~----~~~rl~AlgyDA~~l~~~l-~~l----------- 277 (325)
T 2h4a_A 218 ----NTDFIAQMNGVQFSDIPFFKDTNSPQYQKLAKSTGGEY----QLMRLYAMGADAWLLINQF-NEL----------- 277 (325)
T ss_dssp ----CHHHHHHTTTCEEEECGGGSCCCSHHHHHHHHHTTTCH----HHHHHHHHHHHHHHHHHTH-HHH-----------
T ss_pred ----CchhhhhcCCcEEEccccccCCCcHHHHHHHhccCCCc----chHHHHHHHHHHHHHHHHH-HHH-----------
Confidence 134446789987765 443 45567888888876543 2455679999999986553 321
Q ss_pred CccccccCCCccccCCccccCchHHHHHHHhcCcccccccceEEcCCCCCccceEEEEEeeccceEEE
Q 002309 344 DSRLKTMEGGNLHLGAMSIFDDGMLLLGNILQSNLVGLTGPLKFNSDRSLIHAAYDIINVIGTGFRMI 411 (938)
Q Consensus 344 ~~~~~~~~~~~~~~~~~~~~~~g~~l~~~l~~~~f~G~tG~v~F~~~g~~~~~~~~I~~~~~~~~~~V 411 (938)
+.+.+..|.|+||.++||++|+ ....+.+.++++++++.|
T Consensus 278 ---------------------------~~~~~~~~~G~tG~l~~~~~g~-~~R~l~~~~~~~G~~~~~ 317 (325)
T 2h4a_A 278 ---------------------------RQVPGYRLSGLTGILSADTNCN-VERDMTWYQYQDGAIVPV 317 (325)
T ss_dssp ---------------------------HHSTTCCEEETTEEEEECTTCB-EEEECEEEEEETTEEEEC
T ss_pred ---------------------------hhCCCCeeccCceeEEECCCCe-EEEeechhhccCCeEEEe
Confidence 1134467999999999999998 578889999999988776
No 37
>3ckm_A YRAM (HI1655), LPOA; periplasmic-binding protein, lipoprotein, unliganded, biosynthetic protein; 1.35A {Haemophilus influenzae} SCOP: c.93.1.1
Probab=99.95 E-value=4.6e-27 Score=256.60 Aligned_cols=312 Identities=12% Similarity=0.073 Sum_probs=240.6
Q ss_pred EEEEEEeeCC---CcchhHHHHHHHHHHHHHhcCCCCCCCCEEEEEEccCCCChHHHHHHHHHHHhcCcEEEEcCCChhH
Q 002309 32 VNVGALFTLD---STIGRVAKIAIEEAVKDVNSNSSILHGTKLNITMQSSNCSGFIGMVEALRFMETDIVAIIGPQCSTV 108 (938)
Q Consensus 32 i~IG~i~~~~---~~~g~~~~~a~~~Av~~iN~~~~il~g~~l~~~~~D~~~~~~~a~~~a~~li~~~V~aviGp~~s~~ 108 (938)
+|||+++|+| +.+|...+.|+++|++ |++++++++|++++|..++ +..+.+++|.+||||.+|+.
T Consensus 3 ~kIG~l~PlSG~~a~~G~~~~~g~~lA~~----------g~~i~l~~~D~~~~~~~aa--~~~~~~~~v~~iiGp~~s~~ 70 (327)
T 3ckm_A 3 SQIGLLLPLSGDGQILGTTIQSGFNDAKG----------NSTIPVQVFDTSMNSVQDI--IAQAKQAGIKTLVGPLLKQN 70 (327)
T ss_dssp CCEEEEECCSSTTHHHHHHHHHHHHHHHT----------TCCSCEEEEETTTSCHHHH--HHHHHHTTCCEEECCCSHHH
T ss_pred EEEEEEECCCCchHHHHHHHHHHHHHhCC----------CCCceEEEEeCCCCHHHHH--HHHHHHcCCeEEEEcccccc
Confidence 6899999998 4558889999999863 5778899999999997664 34455669999999999988
Q ss_pred HHHHHHh-hccCCccEEEcccCCCCCCCCCCCceEEecCCchHHHHHHHHHHHhcCCcEEEEEEEcCccccchHHHHHHH
Q 002309 109 AHIVSYV-SNELQVPLLSFGVTDPTLSSLQYPFFVRTTQSDSYQMTAVAEMVSYYGWNAVSVIFVDNEYGRNGVSALNDK 187 (938)
Q Consensus 109 ~~~va~~-~~~~~iP~Is~~~~~~~l~~~~~p~~~r~~ps~~~~~~ai~~~l~~~~w~~vaii~~d~~~g~~~~~~l~~~ 187 (938)
+.+++.. .+...+|+++.++++... ..|++||+.+++..++.++++++...++++++++++|++||+...+.|++.
T Consensus 71 ~~a~~~~~~~~~~v~~~~~~~~~~~~---~~~~~f~~~~~~~~~~~~~a~~~~~~g~k~~~ii~~~~~yg~~~~~~f~~~ 147 (327)
T 3ckm_A 71 LDVILADPAQIQGMDVLALNATPNSR---AIPQLCYYGLSPEDEAESAANKMWNDGVRNPLVAMPQNDLGQRVGNAFNVR 147 (327)
T ss_dssp HHHHHHCGGGGTTCEEEESCCCTTCC---CCTTEEECCCCHHHHHHHHHHHHHHTTCCSCEEEEESSHHHHHHHHHHHHH
T ss_pred chhhHHHHHhccCceEeccCcCcccc---cCCCeEEEecChHHHHHHHHHHHHhcCCeeEEEEecCChHHHHHHHHHHHH
Confidence 8876665 455667777644443322 358899999999999999999999999999999999999999999999999
Q ss_pred HhhcceEEEEEeecCCCCCCChhhHHHHHHHHhcCCceEEEEEeChhhHHHHHHHHHHcCCCCCCeEEEEeCcchhcccC
Q 002309 188 LAERRCRISYKSGIPPESGVNTGYVMDLLVKVALMESRVIVLHVSPSLGFQVFSVAKYLGMMGNGYVWIATDWLAYMLDS 267 (938)
Q Consensus 188 l~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~lk~~~~~viv~~~~~~~~~~~l~~a~~~g~~~~~~~wi~~~~~~~~~~~ 267 (938)
+++.|++|+....++.. + ....+.+++..++|+|++...+.++..+++++++.|+.. .++.++.+......
T Consensus 148 ~~~~Gg~vv~~~~~~~~----~--~~~~~~~~~~~~~dai~~~~~~~~~~~i~~q~~~~g~~~---~~~~~~~~~~~~~~ 218 (327)
T 3ckm_A 148 WQQLAGTDANIRYYNLP----A--DVTYFVQENNSNTTALYAVASPTELAEMKGYLTNIVPNL---AIYASSRASASATN 218 (327)
T ss_dssp HHHHHSSCCEEEEESST----T--HHHHHHHHSCTTCCEEEECCCHHHHHHHHHHHTTTCTTC---EEEECGGGCCHHHH
T ss_pred HHHCCCeEEEEEECCCC----c--hhhHHHHHhccCCcEEEEEcCHHHHHHHHHHHHhhhccC---CEEeeeccccccch
Confidence 99999999988888754 2 335677888899999999999999999999999988654 36666544332111
Q ss_pred CCCChhhhhccccEEEEEE-c--CCCChhhHHHHHHHhhhcCCCCCCCchhhHHhHHHHHHHHHHHHHHhcCCcccccCC
Q 002309 268 ASLPSETLESMQGVLVLRQ-H--IPESDRKKNFLSRWKNLTGGSLGMNSYGLYAYDSVWLLAHAIESFFNQGGKISFSND 344 (938)
Q Consensus 268 ~~~~~~~~~~~~g~~~~~~-~--~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~YDav~~~a~Al~~~~~~~~~~~~~~~ 344 (938)
........+.|++.... + .++.+..+.|.++|++.+ + +..+.+++|||+.+++++.+.
T Consensus 219 --~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~f~~~~~~~~--~--~~~~~AlgyDA~~l~~~l~~~------------- 279 (327)
T 3ckm_A 219 --TNTDFIAQMNGVQFSDIPFFKDTNSPQYQKLAKSTGGEY--Q--LMRLYAMGADAWLLINQFNEL------------- 279 (327)
T ss_dssp --TCHHHHHHTTTCEEEECGGGGCCCSHHHHHHHHHTTTCH--H--HHHHHHHHHHHHHHHHTHHHH-------------
T ss_pred --hcchhhhhcCCeEEEcccccCCCCCHHHHHHHHHHHhhc--C--CCchHHHHHHHHHHHHHHHHh-------------
Confidence 01222234667665543 3 356678889999888766 2 234677899999887654433
Q ss_pred ccccccCCCccccCCccccCchHHHHHHHhcCcccccccceEEcCCCCCccceEEEEEeeccceEEEEE
Q 002309 345 SRLKTMEGGNLHLGAMSIFDDGMLLLGNILQSNLVGLTGPLKFNSDRSLIHAAYDIINVIGTGFRMIGY 413 (938)
Q Consensus 345 ~~~~~~~~~~~~~~~~~~~~~g~~l~~~l~~~~f~G~tG~v~F~~~g~~~~~~~~I~~~~~~~~~~Vg~ 413 (938)
+.+....|.|++|.++||++|+ ....+.+.+++++++++|..
T Consensus 280 --------------------------~~~~~~~f~G~tG~i~fd~~G~-~~r~l~~~~~~~G~~vpv~d 321 (327)
T 3ckm_A 280 --------------------------RQVPGYRLSGLTGILSADTNCN-VERDMTWYQYQDGAIVPVVD 321 (327)
T ss_dssp --------------------------HHSTTCCEEETTEEEEECTTCB-EEEECEEEEEETTEEEECC-
T ss_pred --------------------------cCCCCCCceeceEEEEECCCCC-CccccEEEEEECCEEEEccc
Confidence 1223357999999999999997 57788999999999999864
No 38
>1yae_A Glutamate receptor, ionotropic kainate 2; kainate receptor, membrane protein; HET: NAG FUC DOQ; 3.11A {Rattus norvegicus} SCOP: c.94.1.1
Probab=99.94 E-value=1.9e-26 Score=250.21 Aligned_cols=272 Identities=23% Similarity=0.431 Sum_probs=194.1
Q ss_pred CCCceeEEEecccccccceeeecc------CCcceEeeeHHHHHHHHHhCCCCccEEEEecC-CCC--C-CCChhHHHHh
Q 002309 462 NNGKLLKIGVPNRASYREFVSKVR------GSDMFQGFCIDVFTAAVNLLPYAVPYQFVAFG-DGH--K-NPSYTQLVDS 531 (938)
Q Consensus 462 ~~g~~lrv~~~~~~~~~~~~~~~~------~~~~~~G~~~dll~~la~~l~f~~~~~~~~~~-~~~--~-~~~~~~~i~~ 531 (938)
..+++|||++... +||.+.+. +++++.||++||++++++++|+++++..++.+ .|. . +.+|++++.+
T Consensus 10 ~~~~~l~V~~~~~---~P~~~~~~~~~~~~~~g~~~G~~vdl~~~ia~~lg~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 86 (312)
T 1yae_A 10 LSNRSLIVTTILE---EPYVLFKKSDKPLYGNDRFEGYCIDLLRELSTILGFTYEIRLVEDGKYGAQDDVNGQWNGMVRE 86 (312)
T ss_dssp TCSCEEEEEECCB---TTTBEECCCSSCCCGGGGEESHHHHHHHHHHHHHCCEEEEEECSSCCCCCBCTTTCCBCSHHHH
T ss_pred hcCceEEEEEecc---CCeeEEeccccccCCCceEEEEEHHHHHHHHHHcCCeEEEEecCCCccceeccCCCcchHHHHH
Confidence 3567899999853 67766541 36789999999999999999988555544322 122 1 5789999999
Q ss_pred hhcceecEEeccEeeecCceeeeeeccceecccEEEEEeccC-CCCCcceeeccCchhhHHHHHHHHHHHHhhhheeecc
Q 002309 532 ITTGVFDAVVGDITIVTNRTKIVDFSQPYAASGLVVVVPFRK-LNTGAWAFLRPFSPLMWTVTACFFVVVGIVVWILEHR 610 (938)
Q Consensus 532 l~~g~~D~~~~~~~~t~~r~~~v~fs~p~~~~~~~~lv~~~~-~~~~~~~~l~PF~~~vW~~~~~~~~~~~~~~~~~~~~ 610 (938)
|.+|++|++++++++|++|.+.++||.||+..+.+++++++. ...++|.|+.||+..
T Consensus 87 l~~g~~D~~~~~~~~t~eR~~~~~fs~py~~~~~~~~~~~~~~~~~~~~~~~~pf~~~---------------------- 144 (312)
T 1yae_A 87 LIDHKADLAVAPLAITYVREKVIDFSKPFMTLGISILYRKPNGTNPGVFSFLNGGSLV---------------------- 144 (312)
T ss_dssp HHTTSCSEECSSCBCCHHHHHHEEEEEEEEEECEEEEEEC----------------------------------------
T ss_pred HhCCCcCEEeecceechhhcceEEecceeeecceEEEEeCCccccccceeeecccccC----------------------
Confidence 999999999999999999999999999999999999999876 567899999999910
Q ss_pred cCCCCCCCccccchhhhhHHHHHHHhhhhhhhhhhcccCccccchhHHHHHHHHHHHHHHhhhhhhhhhhhhcccccCCC
Q 002309 611 INDEFRGPPKRQVITILWFSLSTLFFAHIAIFVILAEENTVSTLGRLVLIIWLFVVLIINSSYTASLTSILTVQQLYSPI 690 (938)
Q Consensus 611 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~p~s~s~R~~~~~w~~~~lil~s~Yta~L~s~Lt~~~~~~~i 690 (938)
|+ |++++...|
T Consensus 145 ---------------------------------------p~------------------------------tv~~~~~~i 155 (312)
T 1yae_A 145 ---------------------------------------PR------------------------------GSERMESPI 155 (312)
T ss_dssp -------------------------------------------------------------------------------C
T ss_pred ---------------------------------------Cc------------------------------ccccccCCC
Confidence 10 445566789
Q ss_pred CChHHhhhCCC---CeeEEeCchHHHHHHHhcccc-----------cccccccCCHHHHHHHHhcCCCCCceEEEEecch
Q 002309 691 NGIESLRKSDD---PIGYQEGSFAEYYLSQELNIS-----------KSRLVALRTPEDYAKALKDGPGKGGVAAVVDERP 756 (938)
Q Consensus 691 ~s~~dL~~~~~---~i~~~~~s~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~l~~~~~~g~~~a~i~~~~ 756 (938)
++++||. +. ++|+..++....++.+. ... ...++.+.+.++++++|.+ |+ ||++.+..
T Consensus 156 ~~~~dL~--g~~~~~vg~v~~~~~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~----G~-Da~i~~~~ 227 (312)
T 1yae_A 156 DSADDLA--KQTKIEYGAVEDGATMTFFKKS-KISTYDKMWAFMSSRRQSVLVKSNEEGIQRVLT----SD-YAFLMEST 227 (312)
T ss_dssp CSHHHHH--TCSSSEEECBTTSHHHHHHHHC-CBHHHHHHHHHHHHTHHHHCBSSHHHHHHHHHH----SS-EEEEEEHH
T ss_pred CCHHHHh--hccCceEEEEeCChHHHHHHhc-cCchHHHHHHHHHhcCCCcccCCHHHHHHHHHc----CC-cEEEeccH
Confidence 9999999 55 68877666566666432 111 0235668899999999999 89 99999999
Q ss_pred hHHHHHhcCCcEEEeCccccccceEeeecCCCcchhhHHHHHHhhhccCcHHHHHHhhcCCCCCCCcccccccccccccc
Q 002309 757 YVELFLSSQCSFRIVGQEFTKSGWGFAFPRDSPLAVDLSSAILELAENGDLQRIHDKWLMKSSCSLENAELESDRLHLSS 836 (938)
Q Consensus 757 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~k~spl~~~i~~~il~l~e~G~~~~l~~~w~~~~~c~~~~~~~~~~~l~l~~ 836 (938)
.+.|++++.|++.+++..+...+++++++|++||+..||++|.+|+++|.+++|.+||+....|...... +...+++++
T Consensus 228 ~~~~~~~~~~~l~~~~~~~~~~~~~~a~~k~~~l~~~in~~l~~l~~~G~~~~i~~kw~~~~~c~~~~~~-~~~~~~~~~ 306 (312)
T 1yae_A 228 TIEFVTQRNCNLTQIGGLIDSKGYGVGTPMGSPYRDKITIAILQLQEEGKLHMMKEKWWRGNGCPEEESK-EASALGVQN 306 (312)
T ss_dssp HHHHHHTTCTTEEEESSCSSCEEEEEEEETTCSSHHHHHHHHHHHHHHTHHHHHHHHHHCCSCC----------------
T ss_pred HHHHHHhcCCCEEEecccccccceEEEEeCCCCcHHHHHHHHHHHHHcCCHHHHHhhhcCCCCCCCCCCc-cchhhhhhc
Confidence 9999999889999999888888999999999999999999999999999999999999998899876544 455555543
No 39
>3g3k_A Glutamate receptor, ionotropic kainate 2; membrane protein, cell junction, cell membrane, glycoprotein, ION transport, ionic channel, membrane; HET: GLU IPA; 1.24A {Rattus norvegicus} PDB: 3g3j_A* 3g3i_A* 2i0b_A* 3g3h_A* 3g3g_A* 3g3f_A* 1s7y_A* 1s9t_A* 1sd3_A* 1tt1_A* 1s50_A* 2xxr_A* 2xxt_A* 2xxx_A* 2xxw_A* 2xxy_A* 2xxu_A* 2xxv_A* 3qxm_A* 2i0c_A* ...
Probab=99.92 E-value=1.9e-24 Score=227.86 Aligned_cols=232 Identities=22% Similarity=0.439 Sum_probs=193.2
Q ss_pred CceeEEEecccccccceeeeccC------CcceEeeeHHHHHHHHHhCCCCccEEEEecCC-CCC---CCChhHHHHhhh
Q 002309 464 GKLLKIGVPNRASYREFVSKVRG------SDMFQGFCIDVFTAAVNLLPYAVPYQFVAFGD-GHK---NPSYTQLVDSIT 533 (938)
Q Consensus 464 g~~lrv~~~~~~~~~~~~~~~~~------~~~~~G~~~dll~~la~~l~f~~~~~~~~~~~-~~~---~~~~~~~i~~l~ 533 (938)
+++|||++... +||.+.+.. ++++.||++||++++++++|++++++.++.+. |.. +.+|.+++.+|.
T Consensus 3 ~~~l~v~~~~~---~P~~~~~~~~~~~~~~g~~~G~~vdl~~~ia~~lg~~~~~~~~p~~~~g~~~~~~~~~~~~~~~l~ 79 (259)
T 3g3k_A 3 NRSLIVTTILE---EPYVLFKKSDKPLYGNDRFEGYCIDLLRELSTHLGFTYEIRLVEDGKYGAQDDVNGQWNGMVRELI 79 (259)
T ss_dssp CCCEEEEECCB---TTTBEECCCSSCCCGGGGEESHHHHHHHHHHHHHTCCEEEEECTTCCCCCBCTTTCCBCHHHHHHH
T ss_pred CcEEEEEEecC---CCeEEEeecccccCCCceeeeEHHHHHHHHHHHcCCeEEEEECCCCCcCcccCCCCcchHHHHHHh
Confidence 57899999964 567766543 58999999999999999999886666654321 221 468999999999
Q ss_pred cceecEEeccEeeecCceeeeeeccceecccEEEEEeccCCCCCcceeeccCchhhHHHHHHHHHHHHhhhheeecccCC
Q 002309 534 TGVFDAVVGDITIVTNRTKIVDFSQPYAASGLVVVVPFRKLNTGAWAFLRPFSPLMWTVTACFFVVVGIVVWILEHRIND 613 (938)
Q Consensus 534 ~g~~D~~~~~~~~t~~r~~~v~fs~p~~~~~~~~lv~~~~~~~~~~~~l~PF~~~vW~~~~~~~~~~~~~~~~~~~~~~~ 613 (938)
+|++|++++++++|++|.+.++||.||+..+.++++++..
T Consensus 80 ~g~~D~~~~~~~~t~eR~~~~~fs~py~~~~~~~~~~~~~---------------------------------------- 119 (259)
T 3g3k_A 80 DHKADLAVAPLAITYVREEVIDFSKPFMTLGISILYRKGT---------------------------------------- 119 (259)
T ss_dssp TTSCSEECSSCBCCHHHHTTEEECSCSEEECEEEEEESSS----------------------------------------
T ss_pred cCcccEEEeeeEecccccceEeeeeeeeeCCEEEEEeCCc----------------------------------------
Confidence 9999999999999999999999999999999999998644
Q ss_pred CCCCCccccchhhhhHHHHHHHhhhhhhhhhhcccCccccchhHHHHHHHHHHHHHHhhhhhhhhhhhhcccccCCCCCh
Q 002309 614 EFRGPPKRQVITILWFSLSTLFFAHIAIFVILAEENTVSTLGRLVLIIWLFVVLIINSSYTASLTSILTVQQLYSPINGI 693 (938)
Q Consensus 614 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~p~s~s~R~~~~~w~~~~lil~s~Yta~L~s~Lt~~~~~~~i~s~ 693 (938)
+|+++
T Consensus 120 ---------------------------------------------------------------------------~i~~~ 124 (259)
T 3g3k_A 120 ---------------------------------------------------------------------------PIDSA 124 (259)
T ss_dssp ---------------------------------------------------------------------------SCCSH
T ss_pred ---------------------------------------------------------------------------cccCH
Confidence 57899
Q ss_pred HHhhhCCCC---eeEEeCchHHHHHHHhccccc-----------ccccccCCHHHHHHHHhcCCCCCceEEEEecchhHH
Q 002309 694 ESLRKSDDP---IGYQEGSFAEYYLSQELNISK-----------SRLVALRTPEDYAKALKDGPGKGGVAAVVDERPYVE 759 (938)
Q Consensus 694 ~dL~~~~~~---i~~~~~s~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~l~~~~~~g~~~a~i~~~~~~~ 759 (938)
+||. +++ +|+..++....++.+. +... ..++.+.+.++++++|.+ |+ +|++.+...+.
T Consensus 125 ~dL~--g~~~~~ig~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~----g~-da~i~~~~~~~ 196 (259)
T 3g3k_A 125 DDLA--KQTKIEYGAVEDGATMTFFKRS-KISTYDKMWAFMSSRRQSVLVKSNEEGIQRVLT----SD-YAFLMESTTIE 196 (259)
T ss_dssp HHHH--TCSSSEEEEETTSHHHHHHHHC-CSHHHHHHHHHHHHTHHHHEESSHHHHHHHHHH----SS-EEEEEEHHHHH
T ss_pred HHhc--cCCCceEEEecCcHHHHHHhhc-cchhHHHHHHHHHhcCCCcccCCHHHHHHHHHh----CC-eEEEechHHHH
Confidence 9998 554 8878777777777432 2111 123557899999999999 78 99999999999
Q ss_pred HHHhcCCcEEEeCccccccceEeeecCCCcchhhHHHHHHhhhccCcHHHHHHhhcCCCCCC
Q 002309 760 LFLSSQCSFRIVGQEFTKSGWGFAFPRDSPLAVDLSSAILELAENGDLQRIHDKWLMKSSCS 821 (938)
Q Consensus 760 ~~~~~~~~l~~~~~~~~~~~~~~~~~k~spl~~~i~~~il~l~e~G~~~~l~~~w~~~~~c~ 821 (938)
|+.++.|++.+++..+...+++++++|++||+..||++|.+|+++|.+++|.+||+....|+
T Consensus 197 ~~~~~~~~l~~~~~~~~~~~~~~a~~k~~~l~~~in~~l~~l~~~G~~~~i~~kw~~~~~c~ 258 (259)
T 3g3k_A 197 FVTQRNCNLTQIGGLIDSKGYGVGTPMGSPYRDKITLAILKLQEQGKLHMMKEKWWRGNGCP 258 (259)
T ss_dssp HHHHHCTTEEEESSCSSCEEECCEEETTCTHHHHHHHHHHHHHHTC-CHHHHHHHHCC--CC
T ss_pred HHhcCCceEEEecccceeeeEEEEECCCCccHHHHHHHHHHHHhcChHHHHHHhhcCCCCCC
Confidence 99988999999999888999999999999999999999999999999999999999977786
No 40
>1pb7_A N-methyl-D-aspartate receptor subunit 1; ligand binding receptor, NR1, ligand binding protein; 1.35A {Rattus norvegicus} SCOP: c.94.1.1 PDB: 1pbq_A* 1y1m_A 1y1z_A 1y20_A 2a5t_A* 1pb8_A 1pb9_A
Probab=99.91 E-value=1e-24 Score=233.84 Aligned_cols=236 Identities=22% Similarity=0.414 Sum_probs=187.6
Q ss_pred ceeEEEecccccccceeeeccCCcceEeeeHHHHHHHHHhCCCCccEEEEecC-CCC---C----CCChhHHHHhhhcce
Q 002309 465 KLLKIGVPNRASYREFVSKVRGSDMFQGFCIDVFTAAVNLLPYAVPYQFVAFG-DGH---K----NPSYTQLVDSITTGV 536 (938)
Q Consensus 465 ~~lrv~~~~~~~~~~~~~~~~~~~~~~G~~~dll~~la~~l~f~~~~~~~~~~-~~~---~----~~~~~~~i~~l~~g~ 536 (938)
+.++|++.. .|+||.+.+. ++++.||++||++++++++|+++++..++.+ .|. . +++|++++++|.+|+
T Consensus 41 ~~l~vg~~~--~~~P~~~~~~-~g~~~G~~vDll~~ia~~lg~~~~~~~~~d~~~g~~~~~~~~~~~~w~~~~~~l~~g~ 117 (292)
T 1pb7_A 41 KVICTGPND--TSPGSPRHTV-PQCCYGFCIDLLIKLARTMNFTYEVHLVADGKFGTQERVNNSNKKEWNGMMGELLSGQ 117 (292)
T ss_dssp CEEEEEEC----------CEE-EEEEESHHHHHHHHHHHHHTCCEEEEECTTCCCCCEEECTTSSCEEECHHHHHHHHTS
T ss_pred ceeecccCC--CCCCcccccc-ccCcceeHHHHHHHHHHHcCceEEEEEecCCcccccccccccccCcHHHHHHHHHcCC
Confidence 578888775 6777776554 6789999999999999999988555443322 121 1 247999999999999
Q ss_pred ecEEeccEeeecCceeeeeeccceecccEEEEEeccCCCCCcceeeccCchhhHHHHHHHHHHHHhhhheeecccCCCCC
Q 002309 537 FDAVVGDITIVTNRTKIVDFSQPYAASGLVVVVPFRKLNTGAWAFLRPFSPLMWTVTACFFVVVGIVVWILEHRINDEFR 616 (938)
Q Consensus 537 ~D~~~~~~~~t~~r~~~v~fs~p~~~~~~~~lv~~~~~~~~~~~~l~PF~~~vW~~~~~~~~~~~~~~~~~~~~~~~~~~ 616 (938)
+|++++++++|++|.+.++||.||+..+.+++++++.
T Consensus 118 ~D~~~~~~~~t~~R~~~~~fs~Py~~~~~~i~~~~~~------------------------------------------- 154 (292)
T 1pb7_A 118 ADMIVAPLTINNERAQYIEFSKPFKYQGLTILVKKGT------------------------------------------- 154 (292)
T ss_dssp CSEECSSCBCCHHHHTTEEECSCSEEEEEEEEEETTC-------------------------------------------
T ss_pred cCEEEeeeEecHHHhcceEechhhHhcCeEEEEECCc-------------------------------------------
Confidence 9999999999999999999999999999999998654
Q ss_pred CCccccchhhhhHHHHHHHhhhhhhhhhhcccCccccchhHHHHHHHHHHHHHHhhhhhhhhhhhhcccccCCCCChHHh
Q 002309 617 GPPKRQVITILWFSLSTLFFAHIAIFVILAEENTVSTLGRLVLIIWLFVVLIINSSYTASLTSILTVQQLYSPINGIESL 696 (938)
Q Consensus 617 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~p~s~s~R~~~~~w~~~~lil~s~Yta~L~s~Lt~~~~~~~i~s~~dL 696 (938)
++++++||
T Consensus 155 ------------------------------------------------------------------------~i~~~~dl 162 (292)
T 1pb7_A 155 ------------------------------------------------------------------------RITGINDP 162 (292)
T ss_dssp ------------------------------------------------------------------------CCCSTTCH
T ss_pred ------------------------------------------------------------------------CCCCCcCc
Confidence 34566676
Q ss_pred hhCC---CC-eeEEeCchHHHHHHHhccc----ccccccccCCHHHHHHHHhcCCCCCceEEEEecchhHHHHHhcCCcE
Q 002309 697 RKSD---DP-IGYQEGSFAEYYLSQELNI----SKSRLVALRTPEDYAKALKDGPGKGGVAAVVDERPYVELFLSSQCSF 768 (938)
Q Consensus 697 ~~~~---~~-i~~~~~s~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~l~~~~~~g~~~a~i~~~~~~~~~~~~~~~l 768 (938)
...+ .. +++..++....++.+.... +..++..+.+.++++++|.+ |++||++.+...+.|+++++|++
T Consensus 163 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~----G~vDa~i~d~~~~~~~~~~~~~l 238 (292)
T 1pb7_A 163 RLRNPSDKFIYATVKQSSVDIYFRRQVELSTMYRHMEKHNYESAAEAIQAVRD----NKLHAFIWDSAVLEFEASQKCDL 238 (292)
T ss_dssp HHHSCBTTBCEECBTTSHHHHHHHTCGGGHHHHHHHTTTCBSSHHHHHHHHHT----TSCSEEEEEHHHHHHHHHHCTTE
T ss_pred cccCcccceEEEEEcCchHHHHhhhcccHHHHHHHHHhhcCCCHHHHHHHHHc----CCceEEEEcHHHHHHHHhcCCCE
Confidence 5333 23 4777788777777432111 12245668899999999999 89999999999999999999999
Q ss_pred EEeCccccccceEeeecCCCcchhhHHHHHHhhhccCcHHHHHHhhcCCCCCCC
Q 002309 769 RIVGQEFTKSGWGFAFPRDSPLAVDLSSAILELAENGDLQRIHDKWLMKSSCSL 822 (938)
Q Consensus 769 ~~~~~~~~~~~~~~~~~k~spl~~~i~~~il~l~e~G~~~~l~~~w~~~~~c~~ 822 (938)
.+++..+...+++++++|++||++.||++|.+|+++|.+++|.+||+....|..
T Consensus 239 ~~~~~~~~~~~~~ia~~k~~~l~~~in~al~~l~~~G~~~~l~~kw~~~~~c~~ 292 (292)
T 1pb7_A 239 VTTGELFFRSGFGIGMRKDSPWKQNVSLSILKSHENGFMEDLDKTWVRYQECDS 292 (292)
T ss_dssp EECSSCSEEEEECCEEETTCSSHHHHHHHHHHHHHSSHHHHHHHHHTSSSCCCC
T ss_pred EEcCccccCCceEEEEeCCCHHHHHHHHHHHHHHhCCCHHHHHHhhCCCCCCCC
Confidence 999988888999999999999999999999999999999999999999888863
No 41
>2a5s_A N-methyl-D-aspartate receptor nmdar2A subunit, NMDA receptor nmdar2A; protein-ligand complex, metal transport,membrane protein; HET: GLU; 1.70A {Rattus norvegicus} SCOP: c.94.1.1 PDB: 2a5t_B* 3oen_A* 3oel_A* 3oem_A* 3oek_A*
Probab=99.91 E-value=5.8e-25 Score=234.88 Aligned_cols=246 Identities=20% Similarity=0.361 Sum_probs=187.9
Q ss_pred cCCCceeEEEecccccccceeeecc---CCcceEeeeHHHHHHHHHhCCCCccEEEEecCCCC----CCCChhHHHHhhh
Q 002309 461 PNNGKLLKIGVPNRASYREFVSKVR---GSDMFQGFCIDVFTAAVNLLPYAVPYQFVAFGDGH----KNPSYTQLVDSIT 533 (938)
Q Consensus 461 ~~~g~~lrv~~~~~~~~~~~~~~~~---~~~~~~G~~~dll~~la~~l~f~~~~~~~~~~~~~----~~~~~~~~i~~l~ 533 (938)
|.+|++||||++..++|++|....+ +.+++.||++|+++++++++|++++ ++.+.+++ .+++|++++.+|.
T Consensus 25 ~~~~~~lrvgv~~~~~~~~~~~~~~~~~~~~~~~G~~~dl~~~i~~~lg~~~~--~~~~~~~~~g~~~~~~~~~~~~~l~ 102 (284)
T 2a5s_A 25 PLTETCVRNTVPCRKFVKINNSTNEGMNVKKCCKGFCIDILKKLSRTVKFTYD--LYLVTNGKHGKKVNNVWNGMIGEVV 102 (284)
T ss_dssp CC-CCCCTTCEEEEEEEESSSSSSCEEEEEEEEESHHHHHHHHHHHHHTCCEE--EEECCSSSSCCEETTEECHHHHHHH
T ss_pred CCCCccccccccccccccccccccCCCCCcceeeEEhHHHHHHHHHHCCCCEE--EEEccCCccCcccCCCHHHHHHHHh
Confidence 4679999999998777777743221 1247899999999999999998754 44443322 3578999999999
Q ss_pred cceecEEeccEeeecCceeeeeeccceecccEEEEEeccCCCCCcceeeccCchhhHHHHHHHHHHHHhhhheeecccCC
Q 002309 534 TGVFDAVVGDITIVTNRTKIVDFSQPYAASGLVVVVPFRKLNTGAWAFLRPFSPLMWTVTACFFVVVGIVVWILEHRIND 613 (938)
Q Consensus 534 ~g~~D~~~~~~~~t~~r~~~v~fs~p~~~~~~~~lv~~~~~~~~~~~~l~PF~~~vW~~~~~~~~~~~~~~~~~~~~~~~ 613 (938)
+|++|+++++++++++|.+.++||.||+..+.+++++++.....+.
T Consensus 103 ~g~~D~~~~~~~~t~~R~~~~~fs~p~~~~~~~~~~~~~~~~~~~~---------------------------------- 148 (284)
T 2a5s_A 103 YQRAVMAVGSLTINEERSEVVDFSVPFVETGISVMVSRGTQVTGLS---------------------------------- 148 (284)
T ss_dssp TTSCSEECSSCBCCHHHHTTEEECCCCEEECEEEEEETTCCCCSTT----------------------------------
T ss_pred cCCcCEEEEEEEEeccccceEEeccCchhcCEEEEEECCccccccc----------------------------------
Confidence 9999999999999999999999999999999999998754100000
Q ss_pred CCCCCccccchhhhhHHHHHHHhhhhhhhhhhcccCccccchhHHHHHHHHHHHHHHhhhhhhhhhhhhcccccCCCCCh
Q 002309 614 EFRGPPKRQVITILWFSLSTLFFAHIAIFVILAEENTVSTLGRLVLIIWLFVVLIINSSYTASLTSILTVQQLYSPINGI 693 (938)
Q Consensus 614 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~p~s~s~R~~~~~w~~~~lil~s~Yta~L~s~Lt~~~~~~~i~s~ 693 (938)
....+++
T Consensus 149 -------------------------------------------------------------------------dl~~~~~ 155 (284)
T 2a5s_A 149 -------------------------------------------------------------------------DKKFQRP 155 (284)
T ss_dssp -------------------------------------------------------------------------SHHHHSG
T ss_pred -------------------------------------------------------------------------ccccCCh
Confidence 0001123
Q ss_pred HHhhhCCCCeeEEeCchHHHHHHHhccccccccccc--CCHHHHHHHHhcCCCCCceEEEEecchhHHHHHhcC--CcEE
Q 002309 694 ESLRKSDDPIGYQEGSFAEYYLSQELNISKSRLVAL--RTPEDYAKALKDGPGKGGVAAVVDERPYVELFLSSQ--CSFR 769 (938)
Q Consensus 694 ~dL~~~~~~i~~~~~s~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~~~~~g~~~a~i~~~~~~~~~~~~~--~~l~ 769 (938)
+||. .+.+||+..++.....+.+.+......++.+ .+.++++++|.+ |++||++.+...+.|++++. |++.
T Consensus 156 ~~l~-~~~~vg~v~~~s~~~~l~~~~~~~~~~i~~~~~~~~~~~l~~l~~----G~vDa~i~d~~~~~~~~~~~~~~~l~ 230 (284)
T 2a5s_A 156 HDYS-PPFRFGTVPNGSTERNIRNNYPYMHQYMTRFNQRGVEDALVSLKT----GKLDAFIYDAAVLNYKAGRDEGCKLV 230 (284)
T ss_dssp GGSS-SCCCEECCTTSHHHHHHHTTCHHHHHHHGGGCCSSHHHHHHHHHT----TSCSEEEEEHHHHHHHHHTCTTSCEE
T ss_pred hHcC-CCceEEEEeCCchHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHc----CCeeEEEEchHHHHHHHhcCCCCCEE
Confidence 3332 2567997654445555544321111134555 789999999999 89999999999999988875 7888
Q ss_pred EeC--ccccccceEeeecCCCcchhhHHHHHHhhhccCcHHHHHHhhcCCCCCC
Q 002309 770 IVG--QEFTKSGWGFAFPRDSPLAVDLSSAILELAENGDLQRIHDKWLMKSSCS 821 (938)
Q Consensus 770 ~~~--~~~~~~~~~~~~~k~spl~~~i~~~il~l~e~G~~~~l~~~w~~~~~c~ 821 (938)
.++ ..+...+++++++|+++|++.||++|.+++++|.+++|.+||+.. .|+
T Consensus 231 ~~~~~~~~~~~~~~~a~~k~~~l~~~ln~~l~~l~~~g~~~~i~~kw~~~-~c~ 283 (284)
T 2a5s_A 231 TIGSGYIFATTGYGIALQKGSPWKRQIDLALLQFVGDGEMEELETLWLTG-ICH 283 (284)
T ss_dssp EEECCCGGGCEEECCEEETTCTTHHHHHHHHHHHHHHTHHHHHHHHHTCC-CCC
T ss_pred EeCCccccccCceEEEecCCCHHHHHHHHHHHHHHhCChHHHHHHHhhhc-cCC
Confidence 874 567788999999999999999999999999999999999999984 775
No 42
>4h5g_A Amino acid ABC superfamily ATP binding cassette transporter, binding protein; center for structural genomics of infectious diseases (csgid national institute of allergy and infectious diseases; HET: ARG; 1.78A {Streptococcus pneumoniae} PDB: 4h5f_A*
Probab=99.90 E-value=2.7e-23 Score=216.63 Aligned_cols=220 Identities=21% Similarity=0.306 Sum_probs=189.3
Q ss_pred ceeEEEecccccccceeeec--cCCcceEeeeHHHHHHHHHhCCCCccEEEEecCCCCCCCChhHHHHhhhcceecEEec
Q 002309 465 KLLKIGVPNRASYREFVSKV--RGSDMFQGFCIDVFTAAVNLLPYAVPYQFVAFGDGHKNPSYTQLVDSITTGVFDAVVG 542 (938)
Q Consensus 465 ~~lrv~~~~~~~~~~~~~~~--~~~~~~~G~~~dll~~la~~l~f~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~D~~~~ 542 (938)
++||||+.. .|+||.+.. ++++++.||++||++++++++|++ +++++ ..|.+++.+|.+|++|++++
T Consensus 12 g~L~Vg~~~--~~pP~~~~~~~d~~g~~~G~~vdl~~~ia~~lg~~--~~~~~-------~~~~~~~~~l~~g~~d~~~~ 80 (243)
T 4h5g_A 12 GKLVVATSP--DYAPFEFQSLVDGKNQVVGADIDMAQAIADELGVK--LEILS-------MSFDNVLTSLQTGKADLAVA 80 (243)
T ss_dssp TEEEEEECC--CBTTTBEEEEETTEEEEESHHHHHHHHHHHHHTSE--EEEEE-------CCGGGHHHHHHTTSCSEECS
T ss_pred CEEEEEECC--CCCCcEeeeccCCCCcEEEeHHHHHHHHHHHhCCc--eEEec-------ccHHHHHHHHHcCCCCcccc
Confidence 479999975 789998753 457899999999999999999977 45554 35999999999999999999
Q ss_pred cEeeecCceeeeeeccceecccEEEEEeccCCCCCcceeeccCchhhHHHHHHHHHHHHhhhheeecccCCCCCCCcccc
Q 002309 543 DITIVTNRTKIVDFSQPYAASGLVVVVPFRKLNTGAWAFLRPFSPLMWTVTACFFVVVGIVVWILEHRINDEFRGPPKRQ 622 (938)
Q Consensus 543 ~~~~t~~r~~~v~fs~p~~~~~~~~lv~~~~~~~~~~~~l~PF~~~vW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 622 (938)
++++|++|.+.++||.||+..+.++++++...
T Consensus 81 ~~~~t~eR~~~~~fs~py~~~~~~~~v~~~~~------------------------------------------------ 112 (243)
T 4h5g_A 81 GISATDERKEVFDFSIPYYENKISFLVHKADV------------------------------------------------ 112 (243)
T ss_dssp SCBCCHHHHTTEEECSCSBCCCEEEEEEGGGT------------------------------------------------
T ss_pred cccCChhHccEEEccCccccCccccccccccc------------------------------------------------
Confidence 99999999999999999999999999987651
Q ss_pred chhhhhHHHHHHHhhhhhhhhhhcccCccccchhHHHHHHHHHHHHHHhhhhhhhhhhhhcccccCCCCChHHhhhCCCC
Q 002309 623 VITILWFSLSTLFFAHIAIFVILAEENTVSTLGRLVLIIWLFVVLIINSSYTASLTSILTVQQLYSPINGIESLRKSDDP 702 (938)
Q Consensus 623 ~~~~~~~~~~~l~~~~~~~~~~~~~~~p~s~s~R~~~~~w~~~~lil~s~Yta~L~s~Lt~~~~~~~i~s~~dL~~~~~~ 702 (938)
..+++++||. +++
T Consensus 113 -----------------------------------------------------------------~~~~~~~dl~--g~~ 125 (243)
T 4h5g_A 113 -----------------------------------------------------------------EKYKDLTSLE--SAN 125 (243)
T ss_dssp -----------------------------------------------------------------TTCCSHHHHH--TSE
T ss_pred -----------------------------------------------------------------ccccccccCC--CCE
Confidence 4678999998 899
Q ss_pred eeEEeCchHHHHHHHhcccccccccccCCHHHHHHHHhcCCCCCceEEEEecchhHHHHHhcCCcEEEe---Cccccccc
Q 002309 703 IGYQEGSFAEYYLSQELNISKSRLVALRTPEDYAKALKDGPGKGGVAAVVDERPYVELFLSSQCSFRIV---GQEFTKSG 779 (938)
Q Consensus 703 i~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~a~i~~~~~~~~~~~~~~~l~~~---~~~~~~~~ 779 (938)
|++..|+....++.+.. +..+++.+++..+++++|.+ |++|+++.+...+.+++.++..+... .......+
T Consensus 126 i~v~~g~~~~~~l~~~~--~~~~i~~~~~~~~~~~~l~~----GrvD~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 199 (243)
T 4h5g_A 126 IAAQKGTVPESMVKEQL--PKAQLTSLTNMGEAVNELQA----GKIDAVHMDEPVALSYAAKNAGLAVATVSLKMKDGDA 199 (243)
T ss_dssp EEEETTSHHHHHHHHHC--TTSEEEEESCHHHHHHHHHH----TSCSEEEEEHHHHHHHHHHCTTEEECSCCCCCCSSCC
T ss_pred EEecCCcHHHHHHHHhc--ccceeEEeCCHHHHHHHHHc----CCccEEEecHHHHHHHHHHCCCCceeeccCCcccCce
Confidence 99999999888885543 44578889999999999999 99999999999888887777655443 23445567
Q ss_pred eEeeecCCCc-chhhHHHHHHhhhccCcHHHHHHhhcC
Q 002309 780 WGFAFPRDSP-LAVDLSSAILELAENGDLQRIHDKWLM 816 (938)
Q Consensus 780 ~~~~~~k~sp-l~~~i~~~il~l~e~G~~~~l~~~w~~ 816 (938)
++++++|++| |+..||++|.+|+++|.+++|.+||+.
T Consensus 200 ~~~a~~k~~~~L~~~~n~aL~~l~~dG~~~~i~~Kw~~ 237 (243)
T 4h5g_A 200 NAVALRKNSDDLKEVVDKVIQKLKDEGTYQSYLEKAAS 237 (243)
T ss_dssp BCCEEESSCHHHHHHHHHHHHHHHHHTHHHHHHHHHTT
T ss_pred EEEEEeCCCHHHHHHHHHHHHHHHHCCHHHHHHHHhcC
Confidence 8999999998 999999999999999999999999987
No 43
>2rc8_A Glutamate [NMDA] receptor subunit 3A; membrane protein, cell junction, glycoprotein, ION transport channel, magnesium; 1.45A {Rattus norvegicus} PDB: 2rc7_A 2rc9_A 2rca_A 2rcb_A
Probab=99.90 E-value=2.1e-23 Score=223.91 Aligned_cols=215 Identities=26% Similarity=0.489 Sum_probs=177.7
Q ss_pred ceEeeeHHHHHHHHHhCCCCccEEEEecCCCC----CCCChhHHHHhhhcceecEEeccEeeecCceeeeeeccceeccc
Q 002309 489 MFQGFCIDVFTAAVNLLPYAVPYQFVAFGDGH----KNPSYTQLVDSITTGVFDAVVGDITIVTNRTKIVDFSQPYAASG 564 (938)
Q Consensus 489 ~~~G~~~dll~~la~~l~f~~~~~~~~~~~~~----~~~~~~~~i~~l~~g~~D~~~~~~~~t~~r~~~v~fs~p~~~~~ 564 (938)
++.||++||++++++++|+++ +++.+.+++ .+.+|++++++|.+|++|++++++++|++|.+.++||.||+..+
T Consensus 67 ~~~G~~vdll~~ia~~lg~~~--~~~~~~~~~~g~~~~~~w~~~~~~l~~g~~D~~~~~~~~t~eR~~~~~fs~P~~~~~ 144 (294)
T 2rc8_A 67 CCYGYCIDLLEQLAEDMNFDF--DLYIVGDGKYGAWKNGHWTGLVGDLLSGTANMAVTSFSINTARSQVIDFTSPFFSTS 144 (294)
T ss_dssp EEESHHHHHHHHHHHHHTEEE--EEEECTTCCCCCEETTEECHHHHHHHHTSCSEECSSCBCCHHHHTTSEECSCSEEEE
T ss_pred CceEEhHHHHHHHHHHcCCcE--EEEECCCCcccccCCCCHHHHHHHHHCCCcCEEEeccccCHhHhceEEEccchHhcc
Confidence 589999999999999999774 444433332 35689999999999999999999999999999999999999999
Q ss_pred EEEEEeccCCCCCcceeeccCchhhHHHHHHHHHHHHhhhheeecccCCCCCCCccccchhhhhHHHHHHHhhhhhhhhh
Q 002309 565 LVVVVPFRKLNTGAWAFLRPFSPLMWTVTACFFVVVGIVVWILEHRINDEFRGPPKRQVITILWFSLSTLFFAHIAIFVI 644 (938)
Q Consensus 565 ~~~lv~~~~~~~~~~~~l~PF~~~vW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 644 (938)
..++++++.
T Consensus 145 ~~i~~~~~~----------------------------------------------------------------------- 153 (294)
T 2rc8_A 145 LGILVRTRG----------------------------------------------------------------------- 153 (294)
T ss_dssp EEEEEETTS-----------------------------------------------------------------------
T ss_pred eEEEEECCC-----------------------------------------------------------------------
Confidence 999998765
Q ss_pred hcccCccccchhHHHHHHHHHHHHHHhhhhhhhhhhhhcccccCCCCChHHhh----hCCCCeeEEeCchHHHHHHHhcc
Q 002309 645 LAEENTVSTLGRLVLIIWLFVVLIINSSYTASLTSILTVQQLYSPINGIESLR----KSDDPIGYQEGSFAEYYLSQELN 720 (938)
Q Consensus 645 ~~~~~p~s~s~R~~~~~w~~~~lil~s~Yta~L~s~Lt~~~~~~~i~s~~dL~----~~~~~i~~~~~s~~~~~~~~~~~ 720 (938)
..|++++||. ..+.++|+..|+....++.+...
T Consensus 154 -------------------------------------------~~i~~~~dL~~~~~~~g~~vg~~~gs~~~~~l~~~~~ 190 (294)
T 2rc8_A 154 -------------------------------------------TELSGIHDPKLHHPSQGFRFGTVRESSAEDYVRQSFP 190 (294)
T ss_dssp -------------------------------------------CCCCSTTCHHHHSCCTTCCEECBTTSHHHHHHHHHCH
T ss_pred -------------------------------------------CCcCChhhhhhcCcccCeEEEEEcCChHHHHHHHHHH
Confidence 3677788886 24778999999998888865431
Q ss_pred ccc--ccccccCCHHHHHHHHhcCCCCCceEEEEecchhHHHHHhc--CCcEEEeCccccccceEeeecCCCcchhhHHH
Q 002309 721 ISK--SRLVALRTPEDYAKALKDGPGKGGVAAVVDERPYVELFLSS--QCSFRIVGQEFTKSGWGFAFPRDSPLAVDLSS 796 (938)
Q Consensus 721 ~~~--~~~~~~~~~~~~~~~l~~~~~~g~~~a~i~~~~~~~~~~~~--~~~l~~~~~~~~~~~~~~~~~k~spl~~~i~~ 796 (938)
... .+...+.+.++.+++|.++ +|++||++.+...+.|++++ .|++.+++..+...+++++++|+++|++.||+
T Consensus 191 ~~~~~i~~~~~~~~~~~~~~l~~~--~GrvDa~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ia~~k~~~l~~~in~ 268 (294)
T 2rc8_A 191 EMHEYMRRYNVPATPDGVQYLKND--PEKLDAFIMDKALLDYEVSIDADCKLLTVGKPFAIEGYGIGLPPNSPLTSNISE 268 (294)
T ss_dssp HHHHHHGGGCBSSHHHHHHHHHSS--SCCCSEEEEEHHHHHHHHHTCSSSCEEECSCCEEEEEECCEECTTCTHHHHHHH
T ss_pred HHHHHHHHhcCCCHHHHHHHHHhc--cCceeEEEecHHHHHHHHhhCCCCCEEEcCCcccccceEEEecCCCHHHHHHHH
Confidence 110 1223478899999999872 25899999999999998876 47899999888888999999999999999999
Q ss_pred HHHhhhccCcHHHHHHhhcCCCCCC
Q 002309 797 AILELAENGDLQRIHDKWLMKSSCS 821 (938)
Q Consensus 797 ~il~l~e~G~~~~l~~~w~~~~~c~ 821 (938)
+|.+|+++|.+++|.+||+....|.
T Consensus 269 al~~l~~~G~~~~l~~kw~~~~~c~ 293 (294)
T 2rc8_A 269 LISQYKSHGFMDVLHDKWYKVVPCG 293 (294)
T ss_dssp HHHHHHHTTHHHHHHHHHCCC----
T ss_pred HHHHHHhCCCHHHHHHhhcCCCCCC
Confidence 9999999999999999999987886
No 44
>4gvo_A LMO2349 protein; structural genomics, IDP05245, L-cystine, ABC transporter, periplasmic binding protein, niaid; HET: HIS; 1.45A {Listeria monocytogenes} PDB: 2o1m_A
Probab=99.89 E-value=4.2e-23 Score=215.17 Aligned_cols=223 Identities=16% Similarity=0.246 Sum_probs=184.4
Q ss_pred CCceeEEEecccccccceeeeccCCcceEeeeHHHHHHHHHhC-CCCccEEEEecCCCCCCCChhHHHHhhhcceecEEe
Q 002309 463 NGKLLKIGVPNRASYREFVSKVRGSDMFQGFCIDVFTAAVNLL-PYAVPYQFVAFGDGHKNPSYTQLVDSITTGVFDAVV 541 (938)
Q Consensus 463 ~g~~lrv~~~~~~~~~~~~~~~~~~~~~~G~~~dll~~la~~l-~f~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~D~~~ 541 (938)
+.++||||+.. .|+||.+.+. ++++.||++||+++++++| |++ +++++ ..|.+++.+|.+|++|+++
T Consensus 7 ~~~tl~vg~~~--~~pP~~~~d~-~G~~~G~~vdl~~~ia~~l~g~~--~~~~~-------~~~~~~~~~l~~g~~D~~~ 74 (243)
T 4gvo_A 7 KVQTITVGTGT--QFPNVCFLDE-NGKLTGYDVELVKEIDKRLPGYK--FKFKT-------MDFSNLLVSLGAGKVDIVA 74 (243)
T ss_dssp -CEEEEEEECS--EETTTEEECT-TSCEESHHHHHHHHHHHTCTTEE--EEEEE-------CCGGGHHHHHHTTSCSEEC
T ss_pred cCCeEEEEECC--CCCCeEEECC-CCcEEEhHHHHHHHHHHhccCCe--EEEEE-------CCHHHHHHHHHCCCCCEec
Confidence 45789999975 7899998765 7899999999999999998 866 45554 3599999999999999999
Q ss_pred ccEeeecCceeeeeeccceecccEEEEEeccCCCCCcceeeccCchhhHHHHHHHHHHHHhhhheeecccCCCCCCCccc
Q 002309 542 GDITIVTNRTKIVDFSQPYAASGLVVVVPFRKLNTGAWAFLRPFSPLMWTVTACFFVVVGIVVWILEHRINDEFRGPPKR 621 (938)
Q Consensus 542 ~~~~~t~~r~~~v~fs~p~~~~~~~~lv~~~~~~~~~~~~l~PF~~~vW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 621 (938)
+++++|++|.+.++||.||+.....+++.+..
T Consensus 75 ~~~~~t~eR~~~~~fs~p~~~~~~~~~~~~~~------------------------------------------------ 106 (243)
T 4gvo_A 75 HQMEKSKEREKKFLFNDVAYNNFPLQLTVLDS------------------------------------------------ 106 (243)
T ss_dssp SCCBCCHHHHHHSEECSSCCEECCEEEEEETT------------------------------------------------
T ss_pred ccCCCCHHHhhhhhhhhhhcccccceEEEecc------------------------------------------------
Confidence 99999999999999999987766555544333
Q ss_pred cchhhhhHHHHHHHhhhhhhhhhhcccCccccchhHHHHHHHHHHHHHHhhhhhhhhhhhhcccccCCCCChHHhhhCCC
Q 002309 622 QVITILWFSLSTLFFAHIAIFVILAEENTVSTLGRLVLIIWLFVVLIINSSYTASLTSILTVQQLYSPINGIESLRKSDD 701 (938)
Q Consensus 622 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~p~s~s~R~~~~~w~~~~lil~s~Yta~L~s~Lt~~~~~~~i~s~~dL~~~~~ 701 (938)
...|++++||. |+
T Consensus 107 -----------------------------------------------------------------~~~~~~~~dL~--g~ 119 (243)
T 4gvo_A 107 -----------------------------------------------------------------NNSINSTKDLA--GK 119 (243)
T ss_dssp -----------------------------------------------------------------CCSCSSGGGGT--TC
T ss_pred -----------------------------------------------------------------ccccCchHHhc--CC
Confidence 15788999998 89
Q ss_pred CeeEEeCchHHHHHHHh---cccccccccccCCHHHHHHHHhcCCCCCceEEEEecchhHHHHHhcCC-cEEEeCccccc
Q 002309 702 PIGYQEGSFAEYYLSQE---LNISKSRLVALRTPEDYAKALKDGPGKGGVAAVVDERPYVELFLSSQC-SFRIVGQEFTK 777 (938)
Q Consensus 702 ~i~~~~~s~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~a~i~~~~~~~~~~~~~~-~l~~~~~~~~~ 777 (938)
+||+..|+....++.+. ..........+.+.++++++|.. |++||++.+...+.|..++.. ++.++++.+..
T Consensus 120 ~v~v~~gs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~----GrvDa~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (243)
T 4gvo_A 120 RVITSATSNGALVLKKINEEQGNNFEIAYEGQGSNDTANQLKT----GRADATISTPFAVDFQNKTSAIKEKVVGDVLSN 195 (243)
T ss_dssp EEEECTTCHHHHHHHHHHHHTTSCSEEEECCSGGGSHHHHHHH----TSCSBEEECHHHHHHHHHTCSSCEEEEEEEEEC
T ss_pred eEEEecCchHHHHHHHHHHhccccceeccccCChHHHHHHHHc----CCccEEEccHHHHHHHHhhCCCceEEeccCCCC
Confidence 99999998776666432 11111223356788899999999 899999999998888877754 68888888888
Q ss_pred cceEeeecCCCc-chhhHHHHHHhhhccCcHHHHHHhhcC
Q 002309 778 SGWGFAFPRDSP-LAVDLSSAILELAENGDLQRIHDKWLM 816 (938)
Q Consensus 778 ~~~~~~~~k~sp-l~~~i~~~il~l~e~G~~~~l~~~w~~ 816 (938)
.+++++++|++| |+..||++|.+|+++|.+++|.+|||+
T Consensus 196 ~~~~~~~~k~~~~l~~~in~~l~~l~~~G~~~~i~~kw~g 235 (243)
T 4gvo_A 196 AKVYFMLGKDETKLSKKVDEALQSIIDDGTLKKLSEKWLG 235 (243)
T ss_dssp CEECCEECTTCHHHHHHHHHHHHHHHHTTHHHHHHHHHHC
T ss_pred CcEEEEEeCCCHHHHHHHHHHHHHHHhCcHHHHHHHHHCC
Confidence 899999999988 999999999999999999999999997
No 45
>3kzg_A Arginine 3RD transport system periplasmic binding protein; arginine transport system, protein structure initiative II(PSI II); 2.06A {Legionella pneumophila subsp} SCOP: c.94.1.0
Probab=99.88 E-value=4.8e-22 Score=206.35 Aligned_cols=218 Identities=18% Similarity=0.295 Sum_probs=191.5
Q ss_pred ceeEEEecccccccceeee-ccCCcceEeeeHHHHHHHHHhCCCCccEEEEecCCCCCCCChhHHHHhhhcceecEEecc
Q 002309 465 KLLKIGVPNRASYREFVSK-VRGSDMFQGFCIDVFTAAVNLLPYAVPYQFVAFGDGHKNPSYTQLVDSITTGVFDAVVGD 543 (938)
Q Consensus 465 ~~lrv~~~~~~~~~~~~~~-~~~~~~~~G~~~dll~~la~~l~f~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~D~~~~~ 543 (938)
++||||+.. .|+||.+. +. ++++.|+++|+++++++++|+++++... +|..++.+|.+|++|+++++
T Consensus 3 ~~l~v~~~~--~~~P~~~~~~~-~g~~~G~~~dl~~~i~~~~g~~~~~~~~---------~~~~~~~~l~~g~~D~~~~~ 70 (237)
T 3kzg_A 3 LNLTIGTSK--FNPPFEVWSGN-NSSLYGFDIDLMQEICRRLHATCTFEAY---------IFDDLFPALKNREVDLVIAS 70 (237)
T ss_dssp CEEEEEEES--EETTTEECCCT-TSCCBSHHHHHHHHHHHHTTCEEEEEEE---------CGGGHHHHHHTTSSSEECSS
T ss_pred ceEEEEECC--CCCCeEEEeCC-CCCEeeehHHHHHHHHHHhCCceEEEEc---------CHHHHHHHHhCCCCCEEEEc
Confidence 579999995 68999988 53 7889999999999999999977655554 39999999999999999999
Q ss_pred EeeecCceeeeeeccceecccEEEEEeccCCCCCcceeeccCchhhHHHHHHHHHHHHhhhheeecccCCCCCCCccccc
Q 002309 544 ITIVTNRTKIVDFSQPYAASGLVVVVPFRKLNTGAWAFLRPFSPLMWTVTACFFVVVGIVVWILEHRINDEFRGPPKRQV 623 (938)
Q Consensus 544 ~~~t~~r~~~v~fs~p~~~~~~~~lv~~~~~~~~~~~~l~PF~~~vW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 623 (938)
++.+++|.+.++||.||+..+.++++++..
T Consensus 71 ~~~~~~r~~~~~fs~p~~~~~~~~~~~~~~-------------------------------------------------- 100 (237)
T 3kzg_A 71 MIITDERKKHFIFSLPYMESNSQYITTVDS-------------------------------------------------- 100 (237)
T ss_dssp CBCCTTGGGTCEECCCSBCCEEEEEEETTC--------------------------------------------------
T ss_pred cccChhHhccceeeeeeeecceEEEEECCC--------------------------------------------------
Confidence 999999999999999999999999998755
Q ss_pred hhhhhHHHHHHHhhhhhhhhhhcccCccccchhHHHHHHHHHHHHHHhhhhhhhhhhhhcccccCCCCChHHhhhCCCCe
Q 002309 624 ITILWFSLSTLFFAHIAIFVILAEENTVSTLGRLVLIIWLFVVLIINSSYTASLTSILTVQQLYSPINGIESLRKSDDPI 703 (938)
Q Consensus 624 ~~~~~~~~~~l~~~~~~~~~~~~~~~p~s~s~R~~~~~w~~~~lil~s~Yta~L~s~Lt~~~~~~~i~s~~dL~~~~~~i 703 (938)
++++++||. |++|
T Consensus 101 -----------------------------------------------------------------~~~~~~dL~--g~~i 113 (237)
T 3kzg_A 101 -----------------------------------------------------------------KISTFDDLH--GKKI 113 (237)
T ss_dssp -----------------------------------------------------------------SCCSGGGGT--TCEE
T ss_pred -----------------------------------------------------------------CCCCHHHhC--CCEE
Confidence 388999998 8899
Q ss_pred eEEeCchHHHHHHHhcccccccccccCCHHHHHHHHhcCCCCCceEEEEecchhHHHHHhcCC--------cEEEeCccc
Q 002309 704 GYQEGSFAEYYLSQELNISKSRLVALRTPEDYAKALKDGPGKGGVAAVVDERPYVELFLSSQC--------SFRIVGQEF 775 (938)
Q Consensus 704 ~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~a~i~~~~~~~~~~~~~~--------~l~~~~~~~ 775 (938)
|+..|+....++.+.. +..+++.+.+.++++++|.+ |++|+++.+...+.+++.+.. ++.+++..+
T Consensus 114 ~~~~g~~~~~~~~~~~--~~~~~~~~~~~~~~~~~l~~----G~vDa~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~ 187 (237)
T 3kzg_A 114 GVRKGTPYARQVLSEN--RNNQVIFYELIQDMLLGLSN----NQVDASLMDYEAAKYWMASEPYAYKLIGKKYKLIGKKI 187 (237)
T ss_dssp EEETTSTHHHHHHHTC--SSCEEEEESSHHHHHHHHHT----TSSSEEEEEHHHHHHHHTTSSTTHHHHCCSEEEEEEEE
T ss_pred EEecCCHHHHHHHHhC--CCCcEEEeCCHHHHHHHHHc----CCCCEEEeCcHHHHHHHHhCCccccccCCceEEecCcc
Confidence 9999998777775543 23567778999999999999 999999999999999988866 788888777
Q ss_pred -cccceEeeecCCCc-chhhHHHHHHhhhccCcHHHHHHhhcCC
Q 002309 776 -TKSGWGFAFPRDSP-LAVDLSSAILELAENGDLQRIHDKWLMK 817 (938)
Q Consensus 776 -~~~~~~~~~~k~sp-l~~~i~~~il~l~e~G~~~~l~~~w~~~ 817 (938)
...+++++++|++| ++..||++|.++.++|.+++|.+||+..
T Consensus 188 ~~~~~~~~~~~k~~~~l~~~l~~~l~~l~~~G~~~~i~~k~~~~ 231 (237)
T 3kzg_A 188 SIGEGYSIMANPDQFVLIKKINKILLEMEADGTYLRLYSEYFEG 231 (237)
T ss_dssp ECTTCBCCEECGGGHHHHHHHHHHHHHHHHSSHHHHHHHHHC--
T ss_pred ccCccEEEEEcCCCHHHHHHHHHHHHHHHHCCcHHHHHHHHhCc
Confidence 88889999999977 9999999999999999999999999983
No 46
>1mqi_A Glutamate receptor 2; GLUR2, ligand binding core, S1S2, partial agonist, WILLARDIINES, fluoro-WILLARDIINE, membrane protein; HET: FWD; 1.35A {Rattus norvegicus} SCOP: c.94.1.1 PDB: 1ftj_A* 1ftl_A* 1fto_A 1fw0_A* 1m5b_A* 1ftm_A* 1m5c_A* 1mm6_A* 1mm7_A* 1mqg_A* 1m5e_A* 1mqj_A* 1ms7_A* 1mxu_A* 1mxv_A 1mxw_A 1mxx_A 1mxy_A 1mxz_A 1my0_A ...
Probab=99.87 E-value=7e-22 Score=208.69 Aligned_cols=231 Identities=23% Similarity=0.447 Sum_probs=185.8
Q ss_pred CceeEEEecccccccceeeeccC------CcceEeeeHHHHHHHHHhCCCCccEEEEe---cCCCCCCC-ChhHHHHhhh
Q 002309 464 GKLLKIGVPNRASYREFVSKVRG------SDMFQGFCIDVFTAAVNLLPYAVPYQFVA---FGDGHKNP-SYTQLVDSIT 533 (938)
Q Consensus 464 g~~lrv~~~~~~~~~~~~~~~~~------~~~~~G~~~dll~~la~~l~f~~~~~~~~---~~~~~~~~-~~~~~i~~l~ 533 (938)
+++|||++.. |+||.+.+.. ++++.||++||++++++++|+++++...+ +|....+. +|++++.+|.
T Consensus 3 ~~~l~v~~~~---~pP~~~~~~~~~~~~~~g~~~G~~~dl~~~ia~~lg~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~ 79 (263)
T 1mqi_A 3 NKTVVVTTIL---ESPYVMMKKNHEMLEGNERYEGYCVDLAAEIAKHCGFKYKLTIVGDGKYGARDADTKIWNGMVGELV 79 (263)
T ss_dssp CCCEEEEECC---BTTTBEECTTGGGCCGGGGEESHHHHHHHHHHHHHTCCEEEEECTTCCCCCBCTTTCCBCHHHHHHH
T ss_pred CeEEEEEEec---CCCcEEEecCcccccCCCceeeeHHHHHHHHHHHcCceEEEEEccccccCccCCCCCCcHHHHHHHH
Confidence 5689999984 6888876542 47899999999999999999875544432 12222233 7999999999
Q ss_pred cceecEEeccEeeecCceeeeeeccceecccEEEEEeccCCCCCcceeeccCchhhHHHHHHHHHHHHhhhheeecccCC
Q 002309 534 TGVFDAVVGDITIVTNRTKIVDFSQPYAASGLVVVVPFRKLNTGAWAFLRPFSPLMWTVTACFFVVVGIVVWILEHRIND 613 (938)
Q Consensus 534 ~g~~D~~~~~~~~t~~r~~~v~fs~p~~~~~~~~lv~~~~~~~~~~~~l~PF~~~vW~~~~~~~~~~~~~~~~~~~~~~~ 613 (938)
+|++|++++++++|++|.+.++||.||+..+.++++++..
T Consensus 80 ~g~~D~~~~~~~~t~~R~~~~~fs~p~~~~~~~~~~~~~~---------------------------------------- 119 (263)
T 1mqi_A 80 YGKADIAIAPLTITLVREEVIDFSKPFMSLGISIMIKKGT---------------------------------------- 119 (263)
T ss_dssp TTSCSEECSSCBCCHHHHTTEEECSCSEEECEEEEEETTC----------------------------------------
T ss_pred cCCcCEEEEeeEecHHHHhhcccccceecccEEEEEcCcc----------------------------------------
Confidence 9999999988999999999999999999999999998643
Q ss_pred CCCCCccccchhhhhHHHHHHHhhhhhhhhhhcccCccccchhHHHHHHHHHHHHHHhhhhhhhhhhhhcccccCCCCCh
Q 002309 614 EFRGPPKRQVITILWFSLSTLFFAHIAIFVILAEENTVSTLGRLVLIIWLFVVLIINSSYTASLTSILTVQQLYSPINGI 693 (938)
Q Consensus 614 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~p~s~s~R~~~~~w~~~~lil~s~Yta~L~s~Lt~~~~~~~i~s~ 693 (938)
+|+++
T Consensus 120 ---------------------------------------------------------------------------~i~~~ 124 (263)
T 1mqi_A 120 ---------------------------------------------------------------------------PIESA 124 (263)
T ss_dssp ---------------------------------------------------------------------------SCCSH
T ss_pred ---------------------------------------------------------------------------ccCCH
Confidence 47899
Q ss_pred HHhhhCCCC---eeEE-eCchHHHHHHHhcccc-----------cccccccCCHHHHHHHH--hcCCCCCceEEEEecch
Q 002309 694 ESLRKSDDP---IGYQ-EGSFAEYYLSQELNIS-----------KSRLVALRTPEDYAKAL--KDGPGKGGVAAVVDERP 756 (938)
Q Consensus 694 ~dL~~~~~~---i~~~-~~s~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~l--~~~~~~g~~~a~i~~~~ 756 (938)
+||. +++ +|.. .++. ..++.+. ... ...++.+.+.++++++| .+ |+ +|++.+..
T Consensus 125 ~dL~--g~~~~~ig~v~~~~~-~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~----g~-da~~~~~~ 195 (263)
T 1mqi_A 125 EDLS--KQTEIAYGTLDSGST-KEFFRRS-KIAVFDKMWTYMRSAEPSVFVRTTAEGVARVRKSK----GK-YAYLLEST 195 (263)
T ss_dssp HHHH--TCSSSEEECBSSSHH-HHHHHHC-CSHHHHHHHHHHHHCSSCCCBSSHHHHHHHHHHTT----TS-EEEEEEHH
T ss_pred HHHh--cccCeeEEEEeccHH-HHHHHhc-cchhHHHHHHHHhhCCCceecCCHHHHHHHHhhcC----Cc-EEEEechH
Confidence 9998 666 4644 4554 4444331 111 12456678999999999 77 78 89999999
Q ss_pred hHHHHHhcC-CcEEEeCccccccceEeeecCCCcchhhHHHHHHhhhccCcHHHHHHhhcC-CCCCC
Q 002309 757 YVELFLSSQ-CSFRIVGQEFTKSGWGFAFPRDSPLAVDLSSAILELAENGDLQRIHDKWLM-KSSCS 821 (938)
Q Consensus 757 ~~~~~~~~~-~~l~~~~~~~~~~~~~~~~~k~spl~~~i~~~il~l~e~G~~~~l~~~w~~-~~~c~ 821 (938)
.+.|+.++. |++.+++..+...+++++++|+++++..||++|.+|.++|.+++|.+||+. ...|+
T Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~in~~l~~l~~~g~~~~i~~k~~~~~~~C~ 262 (263)
T 1mqi_A 196 MNEYIEQRKPCDTMKVGGNLDSKGYGIATPKGSSLGNAVNLAVLKLNEQGLLDKLKNKWWYDKGECG 262 (263)
T ss_dssp HHHHHTTSTTCCEEEESCCSCCEEECCEEETTCTTHHHHHHHHHHHHHTTHHHHHHHHHHTTTCSCC
T ss_pred HHHHHHhcCCCceEEcCCcccccceEEEEeCCCccHHHHHHHHHHHHhcccHHHHHHHHcCCCCCCC
Confidence 888887765 578888888888889999999999999999999999999999999999998 67786
No 47
>2v3u_A Glutamate receptor delta-2 subunit; postsynaptic membrane, ionotropic glutamate receptors, transmembrane, membrane protein; 1.74A {Rattus norvegicus} PDB: 2v3t_A
Probab=99.87 E-value=8e-22 Score=208.43 Aligned_cols=232 Identities=22% Similarity=0.356 Sum_probs=180.3
Q ss_pred CCceeEEEecccccccceeeeccC----CcceEeeeHHHHHHHHHhCCCCccEEEEecC---CCCCCCChhHHHHhhhcc
Q 002309 463 NGKLLKIGVPNRASYREFVSKVRG----SDMFQGFCIDVFTAAVNLLPYAVPYQFVAFG---DGHKNPSYTQLVDSITTG 535 (938)
Q Consensus 463 ~g~~lrv~~~~~~~~~~~~~~~~~----~~~~~G~~~dll~~la~~l~f~~~~~~~~~~---~~~~~~~~~~~i~~l~~g 535 (938)
+|++|||++... +||.+.+.+ .+++.||++||++++++++|+++++..++.+ ....+.+|++++.+|.+|
T Consensus 1 ~~~~l~v~~~~~---pP~~~~~~~~~g~~g~~~G~~~dl~~~i~~~lg~~~~~~~~~~~~~g~~~~~~~~~~~~~~l~~g 77 (265)
T 2v3u_A 1 GGVVLRVVTVLE---EPFVMVSENVLGKPKKYQGFSIDVLDALSNYLGFNYEIYVAPDHKYGSPQEDGTWNGLVGELVFK 77 (265)
T ss_dssp CCCEEEEEECCB---TTTBEEECCSTTCCCEEESHHHHHHHHHHHHHTCEEEEEECTTCCCCCBCTTSCBCHHHHHHHTT
T ss_pred CCeEEEEEEecc---CCeEEEecCCCCCcceEeEEEHHHHHHHHHHcCCcEEEEEccCCcccccCCCCCcchHHHHHHcC
Confidence 478999999963 677776531 2789999999999999999987554443211 111346899999999999
Q ss_pred eecEEeccEeeecCceeeeeeccceecccEEEEEeccCCCCCcceeeccCchhhHHHHHHHHHHHHhhhheeecccCCCC
Q 002309 536 VFDAVVGDITIVTNRTKIVDFSQPYAASGLVVVVPFRKLNTGAWAFLRPFSPLMWTVTACFFVVVGIVVWILEHRINDEF 615 (938)
Q Consensus 536 ~~D~~~~~~~~t~~r~~~v~fs~p~~~~~~~~lv~~~~~~~~~~~~l~PF~~~vW~~~~~~~~~~~~~~~~~~~~~~~~~ 615 (938)
++|++++++++|++|.+.++||.||+..+.++++++..
T Consensus 78 ~~D~~~~~~~~t~~R~~~~~fs~p~~~~~~~~~~~~~~------------------------------------------ 115 (265)
T 2v3u_A 78 RADIGISALTITPDRENVVDFTTRYMDYSVGVLLRRGT------------------------------------------ 115 (265)
T ss_dssp SCSEECSSCBCCHHHHTTEEECSCSEEECEEEEEETTC------------------------------------------
T ss_pred CcCeEEeeeEeehhhhccccccceeeeccEEEEEECCC------------------------------------------
Confidence 99999988999999999999999999999999997643
Q ss_pred CCCccccchhhhhHHHHHHHhhhhhhhhhhcccCccccchhHHHHHHHHHHHHHHhhhhhhhhhhhhcccccCCCCChHH
Q 002309 616 RGPPKRQVITILWFSLSTLFFAHIAIFVILAEENTVSTLGRLVLIIWLFVVLIINSSYTASLTSILTVQQLYSPINGIES 695 (938)
Q Consensus 616 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~p~s~s~R~~~~~w~~~~lil~s~Yta~L~s~Lt~~~~~~~i~s~~d 695 (938)
+|++++|
T Consensus 116 -------------------------------------------------------------------------~i~~~~d 122 (265)
T 2v3u_A 116 -------------------------------------------------------------------------SIQSLQD 122 (265)
T ss_dssp -------------------------------------------------------------------------CCCSHHH
T ss_pred -------------------------------------------------------------------------Cccchhh
Confidence 5788999
Q ss_pred hhhCCCCeeEE----eCchHHHHHHHhccccc------------------ccccccCCHHHHHHHHhcCCCCCceEEEEe
Q 002309 696 LRKSDDPIGYQ----EGSFAEYYLSQELNISK------------------SRLVALRTPEDYAKALKDGPGKGGVAAVVD 753 (938)
Q Consensus 696 L~~~~~~i~~~----~~s~~~~~~~~~~~~~~------------------~~~~~~~~~~~~~~~l~~~~~~g~~~a~i~ 753 (938)
|. + ++++. .++....++.+. +... .++..+.+.++++++|.+ |++ |++.
T Consensus 123 L~--~-~v~v~~g~~~~~~~~~~l~~~-~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~----G~~-a~~~ 193 (265)
T 2v3u_A 123 LS--K-QTDIPYGTVLDSAVYQHVRMK-GLNPFERDSMYSQMWRMINRSNGSENNVLESQAGIQKVKY----GNY-AFVW 193 (265)
T ss_dssp HH--T-CSSSCEECBTTSHHHHHHHHH-HTCTTCSCTHHHHHHHHHCC-----CCBSSHHHHHHHHHH----SSC-EEEE
T ss_pred hh--h-hhcEEEEEeccHHHHHHHHhc-CCCcccccHHHHHHHHHHHhhcCcccccCCHHHHHHHHHc----CCE-EEEE
Confidence 97 2 34443 344555566332 1111 113457899999999999 899 8899
Q ss_pred cchhHHHHHhc--CCcEEEeCccccccceEeeecCCCcchhhHHHHHHhhhccCcHHHHHHhhcC-CCCCC
Q 002309 754 ERPYVELFLSS--QCSFRIVGQEFTKSGWGFAFPRDSPLAVDLSSAILELAENGDLQRIHDKWLM-KSSCS 821 (938)
Q Consensus 754 ~~~~~~~~~~~--~~~l~~~~~~~~~~~~~~~~~k~spl~~~i~~~il~l~e~G~~~~l~~~w~~-~~~c~ 821 (938)
+...+.|+..+ .|++.+++..+...+++++++|++|+++.||++|.+|.++|.+++|.+||+. ...|+
T Consensus 194 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~k~~~l~~~in~~l~~l~~~g~~~~i~~kw~~~~~~c~ 264 (265)
T 2v3u_A 194 DAAVLEYVAINDPDCSFYTVGNTVADRGYGIALQHGSPYRDVFSQRILELQQSGDMDILKHKWWPKNGQCD 264 (265)
T ss_dssp EHHHHHHHHHHCTTCCEEEEC---CCEEECCEEETTCTTHHHHHHHHHHHHHHTHHHHHHHHHCCCCCC--
T ss_pred cchHHHHHHhcCCCccEEEeccccCCcceEEEEeCCCccHHHHHHHHHHHhhCChHHHHHhhcCCCcCcCC
Confidence 98888888765 4679999888888899999999999999999999999999999999999998 66774
No 48
>3i6v_A Periplasmic His/Glu/Gln/Arg/opine family-binding; structural genomics, transporter, PSI-2, protein structure initiative; HET: LYS; 2.00A {Silicibacter pomeroyi} SCOP: c.94.1.0
Probab=99.87 E-value=6e-22 Score=204.84 Aligned_cols=219 Identities=19% Similarity=0.370 Sum_probs=186.5
Q ss_pred CceeEEEecccccccceeeeccCCcceEeeeHHHHHHHHHhCCCCccEEEEecCCCCCCCChhHHHHhhhcceecEEecc
Q 002309 464 GKLLKIGVPNRASYREFVSKVRGSDMFQGFCIDVFTAAVNLLPYAVPYQFVAFGDGHKNPSYTQLVDSITTGVFDAVVGD 543 (938)
Q Consensus 464 g~~lrv~~~~~~~~~~~~~~~~~~~~~~G~~~dll~~la~~l~f~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~D~~~~~ 543 (938)
.++|||++.. .|+||.+.+. ++++.||++||++++++++|++++ ++. .+|.+++.+|.+|++|+++++
T Consensus 4 a~~l~v~~~~--~~~P~~~~~~-~g~~~G~~~dl~~~i~~~~g~~~~--~~~-------~~~~~~~~~l~~g~~D~~~~~ 71 (232)
T 3i6v_A 4 ADTVRMGTEG--AYPPYNFIND-AGEVDGFERELGDELCKRAGLTCE--WVK-------NDWDSIIPNLVSGNYDTIIAG 71 (232)
T ss_dssp --CEEEEECS--EETTTEEECT-TSCEESHHHHHHHHHHHHHTCCEE--EEE-------CCGGGHHHHHHTTSCSEECSS
T ss_pred CCEEEEEECC--CCCCeeEECC-CCCEeeehHHHHHHHHHHcCCceE--EEE-------CCHHHHHHHHHCCCCCEEEeC
Confidence 4679999884 7899998764 689999999999999999997755 444 359999999999999999999
Q ss_pred EeeecCceeeeeeccceecccEEEEEeccCCCCCcceeeccCchhhHHHHHHHHHHHHhhhheeecccCCCCCCCccccc
Q 002309 544 ITIVTNRTKIVDFSQPYAASGLVVVVPFRKLNTGAWAFLRPFSPLMWTVTACFFVVVGIVVWILEHRINDEFRGPPKRQV 623 (938)
Q Consensus 544 ~~~t~~r~~~v~fs~p~~~~~~~~lv~~~~~~~~~~~~l~PF~~~vW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 623 (938)
++.|++|.+.++||.||+..+.++++++..
T Consensus 72 ~~~t~~r~~~~~fs~p~~~~~~~~~~~~~~-------------------------------------------------- 101 (232)
T 3i6v_A 72 MSITDERDEVIDFTQNYIPPTASSYVATSD-------------------------------------------------- 101 (232)
T ss_dssp CBCCHHHHTTSEEEEEEECCCEEEEEESST--------------------------------------------------
T ss_pred CcCCHHHHhhcCcccccccCCeEEEEECCC--------------------------------------------------
Confidence 999999999999999999999999887532
Q ss_pred hhhhhHHHHHHHhhhhhhhhhhcccCccccchhHHHHHHHHHHHHHHhhhhhhhhhhhhcccccCCCCChHHhhhCCCCe
Q 002309 624 ITILWFSLSTLFFAHIAIFVILAEENTVSTLGRLVLIIWLFVVLIINSSYTASLTSILTVQQLYSPINGIESLRKSDDPI 703 (938)
Q Consensus 624 ~~~~~~~~~~l~~~~~~~~~~~~~~~p~s~s~R~~~~~w~~~~lil~s~Yta~L~s~Lt~~~~~~~i~s~~dL~~~~~~i 703 (938)
++||. | +|
T Consensus 102 ---------------------------------------------------------------------~~dL~--g-~i 109 (232)
T 3i6v_A 102 ---------------------------------------------------------------------GADLS--G-IV 109 (232)
T ss_dssp ---------------------------------------------------------------------TCCTT--S-EE
T ss_pred ---------------------------------------------------------------------hHHhC--C-CE
Confidence 45676 7 89
Q ss_pred eEEeCchHHHHHHHhcccccccccccCCHHHHHHHHhcCCCCCceEEEEecchhHHHHHhcC-CcEEEeCc-cccccceE
Q 002309 704 GYQEGSFAEYYLSQELNISKSRLVALRTPEDYAKALKDGPGKGGVAAVVDERPYVELFLSSQ-CSFRIVGQ-EFTKSGWG 781 (938)
Q Consensus 704 ~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~a~i~~~~~~~~~~~~~-~~l~~~~~-~~~~~~~~ 781 (938)
|+..|+....++.+. ..+++.+.+.++++++|.+ |++|+++.+...+.+++++. .++.+++. .+...+++
T Consensus 110 gv~~g~~~~~~l~~~----~~~~~~~~~~~~~~~~L~~----GrvDa~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (232)
T 3i6v_A 110 AAQTATIQAGYIAES----GATLVEFATPEETIAAVRN----GEADAVFADRDYLVPIVAESGGELMFVGDDVPLGGGVG 181 (232)
T ss_dssp EEETTSHHHHHHHHS----SSEEEEESSHHHHHHHHHT----TSSSEEEEEHHHHHHHHHHTTTSSEEEEEEEECSSCEE
T ss_pred EEecCchHHHHHHhc----CCeEEEeCCHHHHHHHHHc----CCcCEEEEChHHHHHHHHhCCCCeEEecCCCCCCCcEE
Confidence 999999988888553 3567788999999999999 99999999999999988876 67777765 45677899
Q ss_pred eeecCCCc-chhhHHHHHHhhhccCcHHHHHHhhcCCCCCCCcc
Q 002309 782 FAFPRDSP-LAVDLSSAILELAENGDLQRIHDKWLMKSSCSLEN 824 (938)
Q Consensus 782 ~~~~k~sp-l~~~i~~~il~l~e~G~~~~l~~~w~~~~~c~~~~ 824 (938)
++++|++| ++..||++|.++.++|.+++|.+||+....|....
T Consensus 182 ~~~~k~~~~l~~~ln~~l~~l~~~G~~~~i~~k~~~~~~~~~~~ 225 (232)
T 3i6v_A 182 MGLRESDGELRGKFDAAITSMKEDGTLNTMIKKWFGEDAAVYEE 225 (232)
T ss_dssp EEECTTCHHHHHHHHHHHHHHHHTSHHHHHHHHHHCTTSCCC--
T ss_pred EEEeCCCHHHHHHHHHHHHHHHHCChHHHHHHHHcCCCCCcccc
Confidence 99999987 99999999999999999999999999966655544
No 49
>4f3p_A Glutamine-binding periplasmic protein; ssgcid, structural genomics, GLUT seattle structural genomics center for infectious disease; 2.40A {Burkholderia pseudomallei}
Probab=99.87 E-value=1.7e-21 Score=203.87 Aligned_cols=222 Identities=23% Similarity=0.448 Sum_probs=194.2
Q ss_pred CCCceeEEEecccccccceeeeccCCcceEeeeHHHHHHHHHhCCCCccEEEEecCCCCCCCChhHHHHhhhcceecEEe
Q 002309 462 NNGKLLKIGVPNRASYREFVSKVRGSDMFQGFCIDVFTAAVNLLPYAVPYQFVAFGDGHKNPSYTQLVDSITTGVFDAVV 541 (938)
Q Consensus 462 ~~g~~lrv~~~~~~~~~~~~~~~~~~~~~~G~~~dll~~la~~l~f~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~D~~~ 541 (938)
...++|+|++.. .|+||.+.. ++++.|+++||++.+++++|++++++.. +|..++.+|.+|++|+++
T Consensus 21 ~~~~~l~v~~~~--~~~P~~~~~--~g~~~G~~~dl~~~i~~~~g~~~~~~~~---------~~~~~~~~l~~g~~D~~~ 87 (249)
T 4f3p_A 21 SMAKELVVGTDT--SFMPFEFKQ--GDKYVGFDLDLWAEIAKGAGWTYKIQPM---------DFAGLIPALQTQNIDVAL 87 (249)
T ss_dssp ---CCEEEEEES--CBTTTBEEE--TTEEESHHHHHHHHHHHHHTCCEEEEEE---------CGGGHHHHHHTTSCSEEE
T ss_pred ccCceEEEEeCC--CCCCeEEec--CCeEEEEhHHHHHHHHHHcCCceEEEec---------CHHHHHHHHHCCCCCEEE
Confidence 356789999984 688888873 6889999999999999999987665554 399999999999999998
Q ss_pred ccEeeecCceeeeeeccceecccEEEEEeccCCCCCcceeeccCchhhHHHHHHHHHHHHhhhheeecccCCCCCCCccc
Q 002309 542 GDITIVTNRTKIVDFSQPYAASGLVVVVPFRKLNTGAWAFLRPFSPLMWTVTACFFVVVGIVVWILEHRINDEFRGPPKR 621 (938)
Q Consensus 542 ~~~~~t~~r~~~v~fs~p~~~~~~~~lv~~~~~~~~~~~~l~PF~~~vW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 621 (938)
++++.+++|.+.++||.||+..+.++++++..
T Consensus 88 ~~~~~~~~r~~~~~~s~p~~~~~~~~~~~~~~------------------------------------------------ 119 (249)
T 4f3p_A 88 SGMTIKEERRKAIDFSDPYYDSGLAAMVQANN------------------------------------------------ 119 (249)
T ss_dssp EEEECCHHHHTTEEECSCCEEEEEEEEEETTC------------------------------------------------
T ss_pred eccccCHHHHcCcceecceeeccEEEEEECCC------------------------------------------------
Confidence 88999999999999999999999999988655
Q ss_pred cchhhhhHHHHHHHhhhhhhhhhhcccCccccchhHHHHHHHHHHHHHHhhhhhhhhhhhhcccccCCCCChHHhhhCCC
Q 002309 622 QVITILWFSLSTLFFAHIAIFVILAEENTVSTLGRLVLIIWLFVVLIINSSYTASLTSILTVQQLYSPINGIESLRKSDD 701 (938)
Q Consensus 622 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~p~s~s~R~~~~~w~~~~lil~s~Yta~L~s~Lt~~~~~~~i~s~~dL~~~~~ 701 (938)
+.|++++||. ++
T Consensus 120 ------------------------------------------------------------------~~i~~~~dL~--g~ 131 (249)
T 4f3p_A 120 ------------------------------------------------------------------TTIKSIDDLN--GK 131 (249)
T ss_dssp ------------------------------------------------------------------CSCCSSGGGT--TS
T ss_pred ------------------------------------------------------------------CCcCChHHhC--CC
Confidence 4688999998 88
Q ss_pred CeeEEeCchHHHHHHHhcccccccccccCCHHHHHHHHhcCCCCCceEEEEecchhHHHHHhcCC--cEEEeCccccccc
Q 002309 702 PIGYQEGSFAEYYLSQELNISKSRLVALRTPEDYAKALKDGPGKGGVAAVVDERPYVELFLSSQC--SFRIVGQEFTKSG 779 (938)
Q Consensus 702 ~i~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~a~i~~~~~~~~~~~~~~--~l~~~~~~~~~~~ 779 (938)
+||+..|+....++.+.. +..+++.+++.++++++|.+ |++|+++.+...+.+++++.. ++.+++..+...+
T Consensus 132 ~i~v~~g~~~~~~l~~~~--~~~~~~~~~~~~~~~~~L~~----GrvDa~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 205 (249)
T 4f3p_A 132 VIAAKTGTATIDWIKAHL--KPKEIRQFPNIDQAYLALEA----GRVDAAMHDTPNVLFFVNNEGKGRVKVAGAPVSGDK 205 (249)
T ss_dssp EEEEETTSHHHHHHHHHC--CCSEEEEESSHHHHHHHHHT----TSSSEEEEEHHHHHHHHHTTTTTTEEEEEEEEEEEE
T ss_pred EEEEeCCChHHHHHHhcC--CCceEEEcCCHHHHHHHHHc----CCeeEEEeCcHHHHHHHHhCCCCceEEecCCCCCcc
Confidence 999999999888886543 34567788999999999999 999999999999999888765 5888888888889
Q ss_pred eEeeecCCCcchhhHHHHHHhhhccCcHHHHHHhhcCCC
Q 002309 780 WGFAFPRDSPLAVDLSSAILELAENGDLQRIHDKWLMKS 818 (938)
Q Consensus 780 ~~~~~~k~spl~~~i~~~il~l~e~G~~~~l~~~w~~~~ 818 (938)
++++++|++|++..||++|.++.++|.+++|.++|+...
T Consensus 206 ~~~~~~k~~~l~~~l~~~l~~l~~~g~~~~i~~k~~~~~ 244 (249)
T 4f3p_A 206 YGIGFPKGSPLVAKVNAELARMKADGRYAKIYKKWFGSE 244 (249)
T ss_dssp EEEEEETTCTHHHHHHHHHHHHHHHTHHHHHHHHHHSSC
T ss_pred EEEEEcCCchHHHHHHHHHHHHHhCCcHHHHHHHHcCCC
Confidence 999999999999999999999999999999999999843
No 50
>3k4u_A Binding component of ABC transporter; structural genomics, protein structure INI NEW YORK structural genomix research consortium, nysgxrc; HET: LYS; 2.62A {Wolinella succinogenes} SCOP: c.94.1.0
Probab=99.86 E-value=2.2e-21 Score=202.40 Aligned_cols=222 Identities=18% Similarity=0.342 Sum_probs=194.7
Q ss_pred CceeEEEecccccccceeeeccCCcceEeeeHHHHHHHHHhCCCCccEEEEecCCCCCCCChhHHHHhhhcceecEEecc
Q 002309 464 GKLLKIGVPNRASYREFVSKVRGSDMFQGFCIDVFTAAVNLLPYAVPYQFVAFGDGHKNPSYTQLVDSITTGVFDAVVGD 543 (938)
Q Consensus 464 g~~lrv~~~~~~~~~~~~~~~~~~~~~~G~~~dll~~la~~l~f~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~D~~~~~ 543 (938)
.++|||++.. .|+||.+.+. ++++.|+++||++++++++|++++ ++. .+|..++.+|.+|++|+++++
T Consensus 4 ~~~l~v~~~~--~~~P~~~~~~-~g~~~G~~~dl~~~i~~~~g~~~~--~~~-------~~~~~~~~~l~~g~~D~~~~~ 71 (245)
T 3k4u_A 4 RGELRVGLEP--GYLPFEMKDK-KGNVIGFDVDLAREMAKAMGVKLK--LVP-------TSWDGLIPGLVTEKFDIIISG 71 (245)
T ss_dssp CSEEEEEECT--TSTTTCEEET-TTEEESHHHHHHHHHHHHHTCEEE--EEE-------CCGGGHHHHHHTTSCSEECSS
T ss_pred CCeEEEEECC--CcCCeeEECC-CCCCccchHHHHHHHHHHhCCeEE--EEE-------ccHHHHHHHHhCCCcCEEEec
Confidence 4689999994 7889988764 788999999999999999997754 444 249999999999999999888
Q ss_pred EeeecCceeeeeeccceecccEEEEEeccCCCCCcceeeccCchhhHHHHHHHHHHHHhhhheeecccCCCCCCCccccc
Q 002309 544 ITIVTNRTKIVDFSQPYAASGLVVVVPFRKLNTGAWAFLRPFSPLMWTVTACFFVVVGIVVWILEHRINDEFRGPPKRQV 623 (938)
Q Consensus 544 ~~~t~~r~~~v~fs~p~~~~~~~~lv~~~~~~~~~~~~l~PF~~~vW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 623 (938)
++.+++|.+.+.||.||+..+.++++++..
T Consensus 72 ~~~t~~r~~~~~~s~p~~~~~~~~~~~~~~-------------------------------------------------- 101 (245)
T 3k4u_A 72 MTISQERNLRVNFVEPYIVVGQSLLVKKGL-------------------------------------------------- 101 (245)
T ss_dssp CBCCHHHHTTSEECSCSEEECEEEEEETTT--------------------------------------------------
T ss_pred CcCCHHHHhhcCcchhhheeceEEEEECCc--------------------------------------------------
Confidence 999999999999999999999999998764
Q ss_pred hhhhhHHHHHHHhhhhhhhhhhcccCccccchhHHHHHHHHHHHHHHhhhhhhhhhhhhcccccCCCCChHHhhhCCCCe
Q 002309 624 ITILWFSLSTLFFAHIAIFVILAEENTVSTLGRLVLIIWLFVVLIINSSYTASLTSILTVQQLYSPINGIESLRKSDDPI 703 (938)
Q Consensus 624 ~~~~~~~~~~l~~~~~~~~~~~~~~~p~s~s~R~~~~~w~~~~lil~s~Yta~L~s~Lt~~~~~~~i~s~~dL~~~~~~i 703 (938)
...|++++||...+++|
T Consensus 102 ---------------------------------------------------------------~~~i~~~~dL~~~g~~i 118 (245)
T 3k4u_A 102 ---------------------------------------------------------------EKGVKSYKDLDKPELTL 118 (245)
T ss_dssp ---------------------------------------------------------------TTTCCSGGGGCCSSCEE
T ss_pred ---------------------------------------------------------------ccccCCHHHhccCCcEE
Confidence 14688999998778889
Q ss_pred eEEeCchHHHHHHHhcccccccccccCCHHHHHHHHhcCCCCCceEEEEecchhHHHHHhcCC--cEEEeCccccccceE
Q 002309 704 GYQEGSFAEYYLSQELNISKSRLVALRTPEDYAKALKDGPGKGGVAAVVDERPYVELFLSSQC--SFRIVGQEFTKSGWG 781 (938)
Q Consensus 704 ~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~a~i~~~~~~~~~~~~~~--~l~~~~~~~~~~~~~ 781 (938)
|+..|+....++.+.. +..+++.+++.++++++|.+ |++|+++.+...+.+++.+.. .+..++..+...+++
T Consensus 119 ~v~~g~~~~~~l~~~~--~~~~~~~~~~~~~~~~~L~~----GrvDa~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (245)
T 3k4u_A 119 VTKFGVSAEYAAKRLF--KNAKLKTYDTEAEAVQEVLN----GKADMFIFDLPFNVAFMAQKGQGYLVHLDTSLTYEPLG 192 (245)
T ss_dssp EEETTSHHHHHHHHHC--SSSEEEEESSHHHHHHHHHS----SSSEEEEEEHHHHHHHHHHTTTTTEEEECCCCSCEEEC
T ss_pred EEeCCcHHHHHHHhhC--CcCCEEEeCCHHHHHHHHHc----CCCcEEEEcHHHHHHHHhcCCccceeecCCCcccccEE
Confidence 9999999888885543 34567788999999999999 999999999998888877654 688888888888999
Q ss_pred eeecCCCc-chhhHHHHHHhhhccCcHHHHHHhhcC
Q 002309 782 FAFPRDSP-LAVDLSSAILELAENGDLQRIHDKWLM 816 (938)
Q Consensus 782 ~~~~k~sp-l~~~i~~~il~l~e~G~~~~l~~~w~~ 816 (938)
++++|++| ++..||++|.++.++|.+++|.++|+.
T Consensus 193 ~~~~k~~~~l~~~ln~~l~~l~~~g~~~~i~~k~~~ 228 (245)
T 3k4u_A 193 WAIKKGDPDFLNWLNHFLAQIKHDGSYDELYERWFV 228 (245)
T ss_dssp CEECTTCHHHHHHHHHHHHHHHHHSHHHHHHHHHHT
T ss_pred EEEcCCCHHHHHHHHHHHHHHHhCcHHHHHHHHhcC
Confidence 99999998 999999999999999999999999998
No 51
>3del_B Arginine binding protein; alpha and beta protein (A/B), periplasmic protein, arginine protein binding, transport protein; 1.92A {Chlamydia trachomatis} SCOP: c.94.1.0
Probab=99.86 E-value=3.7e-21 Score=200.27 Aligned_cols=222 Identities=19% Similarity=0.292 Sum_probs=193.3
Q ss_pred CceeEEEecccccccceeeeccCCcceEeeeHHHHHHHHHhCCCCccEEEEecCCCCCCCChhHHHHhhhcceecEEecc
Q 002309 464 GKLLKIGVPNRASYREFVSKVRGSDMFQGFCIDVFTAAVNLLPYAVPYQFVAFGDGHKNPSYTQLVDSITTGVFDAVVGD 543 (938)
Q Consensus 464 g~~lrv~~~~~~~~~~~~~~~~~~~~~~G~~~dll~~la~~l~f~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~D~~~~~ 543 (938)
.++|||++.. .|+||.+.+. ++.+.|+++|+++.+++++|++ +++++ .+|..++.+|.+|++|+++++
T Consensus 10 ~~~l~v~~~~--~~~P~~~~~~-~g~~~G~~~dl~~~i~~~~g~~--~~~~~-------~~~~~~~~~l~~g~~D~~~~~ 77 (242)
T 3del_B 10 SEKFIVGTNA--TYPPFEFVDK-RGEVVGFDIDLAREISNKLGKT--LDVRE-------FSFDALILNLKQHRIDAVITG 77 (242)
T ss_dssp -CEEEEEECS--CBTTTBEECT-TSCEESHHHHHHHHHHHHHTCE--EEEEE-------CCGGGHHHHHHTTSSSEECSS
T ss_pred CCcEEEEeCC--CCCCeeEECC-CCCEEEeeHHHHHHHHHHcCCc--eEEEE-------cCHHHHHHHHhCCCcCEEEec
Confidence 4689999964 7889988765 7899999999999999999976 55554 359999999999999999888
Q ss_pred EeeecCceeeeeecccee--cccEEEEEeccCCCCCcceeeccCchhhHHHHHHHHHHHHhhhheeecccCCCCCCCccc
Q 002309 544 ITIVTNRTKIVDFSQPYA--ASGLVVVVPFRKLNTGAWAFLRPFSPLMWTVTACFFVVVGIVVWILEHRINDEFRGPPKR 621 (938)
Q Consensus 544 ~~~t~~r~~~v~fs~p~~--~~~~~~lv~~~~~~~~~~~~l~PF~~~vW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 621 (938)
++.+++|.+.++| .||+ ..+.++++++.
T Consensus 78 ~~~~~~r~~~~~~-~p~~~~~~~~~~~~~~~------------------------------------------------- 107 (242)
T 3del_B 78 MSITPSRLKEILM-IPYYGEEIKHLVLVFKG------------------------------------------------- 107 (242)
T ss_dssp BBCCHHHHTTEEE-EEEEEEEESEEEEEEES-------------------------------------------------
T ss_pred CcCCHHHHhcccc-eeeeecCCceEEEEeCC-------------------------------------------------
Confidence 9999999999999 9999 88888888754
Q ss_pred cchhhhhHHHHHHHhhhhhhhhhhcccCccccchhHHHHHHHHHHHHHHhhhhhhhhhhhhcccccCCCCChHHhhhCCC
Q 002309 622 QVITILWFSLSTLFFAHIAIFVILAEENTVSTLGRLVLIIWLFVVLIINSSYTASLTSILTVQQLYSPINGIESLRKSDD 701 (938)
Q Consensus 622 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~p~s~s~R~~~~~w~~~~lil~s~Yta~L~s~Lt~~~~~~~i~s~~dL~~~~~ 701 (938)
.+|++++||. |+
T Consensus 108 ------------------------------------------------------------------~~i~~~~dL~--g~ 119 (242)
T 3del_B 108 ------------------------------------------------------------------ENKHPLPLTQ--YR 119 (242)
T ss_dssp ------------------------------------------------------------------CCSCCCCGGG--SS
T ss_pred ------------------------------------------------------------------CCCCCHHHhC--CC
Confidence 3678899998 88
Q ss_pred CeeEEeCchHHHHHHHhcccccccccccCCHHHHHHHHhcCCCCCceEEEEecchhHHHHHhcCCcEEEeCccccccc--
Q 002309 702 PIGYQEGSFAEYYLSQELNISKSRLVALRTPEDYAKALKDGPGKGGVAAVVDERPYVELFLSSQCSFRIVGQEFTKSG-- 779 (938)
Q Consensus 702 ~i~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~a~i~~~~~~~~~~~~~~~l~~~~~~~~~~~-- 779 (938)
+||+..|+....++.+ .+..+++.+.+.++++++|.+ |++|+++.+...+.+++++...+.+++..+...+
T Consensus 120 ~i~v~~g~~~~~~l~~---~~~~~~~~~~~~~~~~~~L~~----g~vDa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (242)
T 3del_B 120 SVAVQTGTYQEAYLQS---LSEVHIRSFDSTLEVLMEVMH----GKSPVAVLEPSIAQVVLKDFPALSTATIDLPEDQWV 192 (242)
T ss_dssp CEEEETTSHHHHHHHH---STTCCEEEESSHHHHHHHHHT----TSSSEEEECHHHHHHHGGGCTTEEEEEEECCGGGCE
T ss_pred EEEEEcCcHHHHHHHh---CCCceEEEECCHHHHHHHHHc----CCCCEEEecHHHHHHHHHhCCCeEEecCccCccccc
Confidence 9999999998888855 344577788999999999999 9999999999999999998888888877777777
Q ss_pred --eEeeecCCCc-chhhHHHHHHhhhccCcHHHHHHhhcCCCCCCC
Q 002309 780 --WGFAFPRDSP-LAVDLSSAILELAENGDLQRIHDKWLMKSSCSL 822 (938)
Q Consensus 780 --~~~~~~k~sp-l~~~i~~~il~l~e~G~~~~l~~~w~~~~~c~~ 822 (938)
++++++|+++ ++..||++|.++.++|.+++|.+||+....++.
T Consensus 193 ~~~~~~~~k~~~~l~~~l~~~l~~l~~~g~~~~i~~k~~~~~~~~~ 238 (242)
T 3del_B 193 LGYGIGVASDRPALALKIEAAVQEIRKEGVLAELEQKWGLNNLEHH 238 (242)
T ss_dssp EEEEEEEETTCHHHHHHHHHHHHHHHHTTHHHHHHHHTTGGGCSST
T ss_pred ceEEEEEeCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHCCCCCccc
Confidence 9999999988 999999999999999999999999999555444
No 52
>3hv1_A Polar amino acid ABC uptake transporter substrate binding protein; protein structure initiative II(PSI II), nysgxrc; 1.90A {Streptococcus thermophilus lmg 18311}
Probab=99.86 E-value=4.1e-21 Score=203.43 Aligned_cols=226 Identities=18% Similarity=0.347 Sum_probs=194.2
Q ss_pred CCceeEEEecccccccceeeeccCCcceEeeeHHHHHHHHHhCCCCccEEEEecCCCCCCCChhHHHHhhhcceecEEec
Q 002309 463 NGKLLKIGVPNRASYREFVSKVRGSDMFQGFCIDVFTAAVNLLPYAVPYQFVAFGDGHKNPSYTQLVDSITTGVFDAVVG 542 (938)
Q Consensus 463 ~g~~lrv~~~~~~~~~~~~~~~~~~~~~~G~~~dll~~la~~l~f~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~D~~~~ 542 (938)
..++|||++.. .|+||.+.+. ++.+.|+++||++.+++++|++ ++++. .+|..++.+|.+|++|++++
T Consensus 19 ~~~~l~v~~~~--~~~P~~~~~~-~g~~~G~~~dl~~~i~~~~g~~--~~~~~-------~~~~~~~~~l~~g~~D~~~~ 86 (268)
T 3hv1_A 19 KEKKIKIGFDA--TFVPMGYEEK-DGSYIGFDIDLANAVFKLYGID--VEWQA-------IDWDMKETELKNGTIDLIWN 86 (268)
T ss_dssp HHTEEEEEECT--EETTTEEECT-TSCEECHHHHHHHHHHHTTTCE--EEEEE-------CCGGGHHHHHHHTSCSEECS
T ss_pred cCCcEEEEECC--CCCCceEECC-CCCEEEehHHHHHHHHHHhCCc--EEEEE-------CCHHHHHHHHHCCCCCEEEe
Confidence 35689999986 7899988764 7889999999999999999976 44554 24999999999999999988
Q ss_pred cEeeecCceeeeeeccceecccEEEEEeccCCCCCcceeeccCchhhHHHHHHHHHHHHhhhheeecccCCCCCCCcccc
Q 002309 543 DITIVTNRTKIVDFSQPYAASGLVVVVPFRKLNTGAWAFLRPFSPLMWTVTACFFVVVGIVVWILEHRINDEFRGPPKRQ 622 (938)
Q Consensus 543 ~~~~t~~r~~~v~fs~p~~~~~~~~lv~~~~~~~~~~~~l~PF~~~vW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 622 (938)
+++.+.+|.+.++||.||+..+.++++++..
T Consensus 87 ~~~~t~~r~~~~~fs~p~~~~~~~~~~~~~~------------------------------------------------- 117 (268)
T 3hv1_A 87 GYSVTDERKQSADFTEPYMVNEQVLVTKKSS------------------------------------------------- 117 (268)
T ss_dssp SCBCCHHHHTTCEECCCCEEECEEEEEEGGG-------------------------------------------------
T ss_pred cCccCHHHHhcCcCcHHHeeCceEEEEECCC-------------------------------------------------
Confidence 8999999999999999999999999987543
Q ss_pred chhhhhHHHHHHHhhhhhhhhhhcccCccccchhHHHHHHHHHHHHHHhhhhhhhhhhhhcccccCCCCChHHhhhCCCC
Q 002309 623 VITILWFSLSTLFFAHIAIFVILAEENTVSTLGRLVLIIWLFVVLIINSSYTASLTSILTVQQLYSPINGIESLRKSDDP 702 (938)
Q Consensus 623 ~~~~~~~~~~~l~~~~~~~~~~~~~~~p~s~s~R~~~~~w~~~~lil~s~Yta~L~s~Lt~~~~~~~i~s~~dL~~~~~~ 702 (938)
.|++++||. |++
T Consensus 118 ------------------------------------------------------------------~i~~~~dL~--g~~ 129 (268)
T 3hv1_A 118 ------------------------------------------------------------------GIDSVAGMA--GKT 129 (268)
T ss_dssp ------------------------------------------------------------------CCCSSGGGT--TCC
T ss_pred ------------------------------------------------------------------CCCCHHHhC--CCE
Confidence 678999997 899
Q ss_pred eeEEeCchHHHHHHHhcc-----cccccccccCCHHHHHHHHhcCCCCCceEEEEecchhHHHHHhcC---CcEEEeCcc
Q 002309 703 IGYQEGSFAEYYLSQELN-----ISKSRLVALRTPEDYAKALKDGPGKGGVAAVVDERPYVELFLSSQ---CSFRIVGQE 774 (938)
Q Consensus 703 i~~~~~s~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~l~~~~~~g~~~a~i~~~~~~~~~~~~~---~~l~~~~~~ 774 (938)
||+..|+....++.+... .+..+++.+.+.++++++|.+ |++|+++.+...+.+++++. +++.+++..
T Consensus 130 i~v~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~----GrvDa~i~~~~~~~~~~~~~~~~~~l~~~~~~ 205 (268)
T 3hv1_A 130 LGAQAGSSGYDAFNASPKILKDVVANQKVVQYSTFTQALIDLNS----GRIDGLLIDRVYANYYLEKSGVLDQYNVMPAG 205 (268)
T ss_dssp EEEETTCHHHHHHHHCTTTTTTTSGGGCEEEESSHHHHHHHHHH----TSCSEEEEEHHHHHHHHHHTTCGGGEEEEECS
T ss_pred EEEEeCCchHHHHHHhhHHHhhhcccceEEEeCCHHHHHHHHHc----CCCCEEEeCHHHHHHHHHhCCCCCceEECCCC
Confidence 999999998888754221 222466778899999999999 99999999999998888775 468888887
Q ss_pred ccccceEeeecCCCc-chhhHHHHHHhhhccCcHHHHHHhhcCCCCCC
Q 002309 775 FTKSGWGFAFPRDSP-LAVDLSSAILELAENGDLQRIHDKWLMKSSCS 821 (938)
Q Consensus 775 ~~~~~~~~~~~k~sp-l~~~i~~~il~l~e~G~~~~l~~~w~~~~~c~ 821 (938)
+...+++++++|+++ ++..||++|.++.++|.+++|.++|+......
T Consensus 206 ~~~~~~~~~~~k~~~~l~~~ln~~l~~l~~~g~~~~i~~k~~~~~~~~ 253 (268)
T 3hv1_A 206 YEGESFAVGARKVDKTLIKKINQGFETLYKNGEFQKISNKWFGEDVAT 253 (268)
T ss_dssp SCCEEECCEECTTCHHHHHHHHHHHHHHHHHTHHHHHHHHHHSSCCCC
T ss_pred CCCCcEEEEEcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHhcCCCCCC
Confidence 888899999999998 99999999999999999999999999844333
No 53
>3kbr_A Cyclohexadienyl dehydratase; pseudomonas aeruginos structural genomics, PSI-2, protein structure initiative; HET: EPE; 1.66A {Pseudomonas aeruginosa}
Probab=99.85 E-value=2.7e-21 Score=200.94 Aligned_cols=221 Identities=17% Similarity=0.273 Sum_probs=190.9
Q ss_pred CceeEEEecccccccceeeeccCCcceEeeeHHHHHHHHHhCCCCccEEEEecCCCCCCCChhHHHHhhhcceecEEecc
Q 002309 464 GKLLKIGVPNRASYREFVSKVRGSDMFQGFCIDVFTAAVNLLPYAVPYQFVAFGDGHKNPSYTQLVDSITTGVFDAVVGD 543 (938)
Q Consensus 464 g~~lrv~~~~~~~~~~~~~~~~~~~~~~G~~~dll~~la~~l~f~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~D~~~~~ 543 (938)
.++|||++.. .|+||.+.+. ++++.|+++|+++++++++|+++ +++. .+|..++.+|.+|++|+++++
T Consensus 14 ~~~l~v~~~~--~~~P~~~~~~-~g~~~G~~~dl~~~i~~~~g~~~--~~~~-------~~~~~~~~~l~~g~~D~~~~~ 81 (239)
T 3kbr_A 14 SGVLRVATTG--DYKPFSYRTE-EGGYAGFDVDMAQRLAESLGAKL--VVVP-------TSWPNLMRDFADDRFDIAMSG 81 (239)
T ss_dssp HTEEEEEECS--EETTTEEECT-TSCEESHHHHHHHHHHHHTTCEE--EEEE-------CCTTTHHHHHHTTCCSEECSS
T ss_pred CCeEEEEECC--CCCCeeEECC-CCCEEeehHHHHHHHHHHHCCce--EEEE-------eCHHHHHHHHHCCCcCEEEeC
Confidence 4689999974 6899988765 78999999999999999999774 4444 349999999999999999888
Q ss_pred EeeecCceeeeeeccceecccEEEEEeccCCCCCcceeeccCchhhHHHHHHHHHHHHhhhheeecccCCCCCCCccccc
Q 002309 544 ITIVTNRTKIVDFSQPYAASGLVVVVPFRKLNTGAWAFLRPFSPLMWTVTACFFVVVGIVVWILEHRINDEFRGPPKRQV 623 (938)
Q Consensus 544 ~~~t~~r~~~v~fs~p~~~~~~~~lv~~~~~~~~~~~~l~PF~~~vW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 623 (938)
++.+++|.+.++||.||+..+.++++++...
T Consensus 82 ~~~t~~r~~~~~fs~p~~~~~~~~~~~~~~~------------------------------------------------- 112 (239)
T 3kbr_A 82 ISINLERQRQAYFSIPYLRDGKTPITLCSEE------------------------------------------------- 112 (239)
T ss_dssp CBCCHHHHTTCEECSCSEEECEEEEEEGGGG-------------------------------------------------
T ss_pred CcCCHHHcCccccchHHhccCcEEEEECCcc-------------------------------------------------
Confidence 9999999999999999999999999987651
Q ss_pred hhhhhHHHHHHHhhhhhhhhhhcccCccccchhHHHHHHHHHHHHHHhhhhhhhhhhhhcccccCCCCChHHhhhCCCCe
Q 002309 624 ITILWFSLSTLFFAHIAIFVILAEENTVSTLGRLVLIIWLFVVLIINSSYTASLTSILTVQQLYSPINGIESLRKSDDPI 703 (938)
Q Consensus 624 ~~~~~~~~~~l~~~~~~~~~~~~~~~p~s~s~R~~~~~w~~~~lil~s~Yta~L~s~Lt~~~~~~~i~s~~dL~~~~~~i 703 (938)
..|++++||...+++|
T Consensus 113 ----------------------------------------------------------------~~i~~~~dL~~~g~~v 128 (239)
T 3kbr_A 113 ----------------------------------------------------------------ARFQTLEQIDQPGVTA 128 (239)
T ss_dssp ----------------------------------------------------------------GGGSSHHHHSSTTCEE
T ss_pred ----------------------------------------------------------------cccCCHHHhcCCCcEE
Confidence 4678999998667789
Q ss_pred eEEeCchHHHHHHHhcccccccccccCCHHHHHHHHhcCCCCCceEEEEecchhHHHHHhcCCcEEEeC--ccccccceE
Q 002309 704 GYQEGSFAEYYLSQELNISKSRLVALRTPEDYAKALKDGPGKGGVAAVVDERPYVELFLSSQCSFRIVG--QEFTKSGWG 781 (938)
Q Consensus 704 ~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~a~i~~~~~~~~~~~~~~~l~~~~--~~~~~~~~~ 781 (938)
|+..|+....++.+.. +..+++.+++.++++++|.+ |++|+++.+...+.++.++..++.++. ..+...+++
T Consensus 129 ~~~~g~~~~~~l~~~~--~~~~~~~~~~~~~~~~~l~~----grvDa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (239)
T 3kbr_A 129 IVNPGGTNEKFARANL--KKARILVHPDNVTIFQQIVD----GKADLMMTDAIEARLQSRLHPELCAVHPQQPFDFAEKA 202 (239)
T ss_dssp EECTTSHHHHHHHHHC--SSSEEEECCCTTTHHHHHHT----TSCSEEEEEHHHHHHHHHHCTTEEECCCC-CCCCEEEC
T ss_pred EEcCCCcHHHHHHHhC--CCCceEEeCCHHHHHHHHHc----CCcCEEEEchHHHHHHHHhCCCcEEecCCCCccccceE
Confidence 9999999888885543 34577788999999999999 999999999999999988877777765 346778899
Q ss_pred eeecCCCc-chhhHHHHHHhhhccCcHHHHHHhhcC
Q 002309 782 FAFPRDSP-LAVDLSSAILELAENGDLQRIHDKWLM 816 (938)
Q Consensus 782 ~~~~k~sp-l~~~i~~~il~l~e~G~~~~l~~~w~~ 816 (938)
++++| .+ ++..||++|.++.++|.+++|.++|+.
T Consensus 203 ~~~~k-~~~l~~~ln~~l~~l~~~g~~~~i~~k~~~ 237 (239)
T 3kbr_A 203 YLLPR-DEAFKRYVDQWLHIAEQSGLLRQRMEHWLE 237 (239)
T ss_dssp CEECS-CHHHHHHHHHHHHHHHHHTHHHHHHHHHC-
T ss_pred EEEcC-CHHHHHHHHHHHHHHHHCCcHHHHHHHHhc
Confidence 99999 55 999999999999999999999999986
No 54
>3tql_A Arginine-binding protein; transport and binding proteins, transport protein; HET: MSE ARG; 1.59A {Coxiella burnetii} SCOP: c.94.1.0
Probab=99.85 E-value=9.5e-21 Score=194.82 Aligned_cols=218 Identities=24% Similarity=0.416 Sum_probs=184.4
Q ss_pred ceeEEEecccccccceeeeccCCcceEeeeHHHHHHHHHhCCCCccEEEEecCCCCCCCChhHHHHhhhcceecEEeccE
Q 002309 465 KLLKIGVPNRASYREFVSKVRGSDMFQGFCIDVFTAAVNLLPYAVPYQFVAFGDGHKNPSYTQLVDSITTGVFDAVVGDI 544 (938)
Q Consensus 465 ~~lrv~~~~~~~~~~~~~~~~~~~~~~G~~~dll~~la~~l~f~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~D~~~~~~ 544 (938)
++|||++.. .|+||.+.+. ++++.|+++|+++.+++++|+++++ +. .+|..++.+|.+|++|++++++
T Consensus 2 ~~l~v~~~~--~~~P~~~~~~-~g~~~G~~~dl~~~i~~~~g~~~~~--~~-------~~~~~~~~~l~~g~~D~~~~~~ 69 (227)
T 3tql_A 2 DTIKFATEA--TYPPYVYMGP-SGQVEGFGADIVKAVCKQMQAVCTI--SN-------QPWDSLIPSLKLGKFDALFGGM 69 (227)
T ss_dssp CEEEEEECS--CBTTTBEEC---CCEESHHHHHHHHHHHHTTCEEEE--EE-------CCHHHHHHHHHHTSCSEECSSC
T ss_pred ceEEEEEcC--CCCCeeEECC-CCCcccchHHHHHHHHHHhCCeEEE--Ee-------CCHHHHHHHHhCCCCCEEEecC
Confidence 579999985 6889988764 7889999999999999999977544 44 3499999999999999998889
Q ss_pred eeecCceeeeeeccceecccEEEEEeccCCCCCcceeeccCchhhHHHHHHHHHHHHhhhheeecccCCCCCCCccccch
Q 002309 545 TIVTNRTKIVDFSQPYAASGLVVVVPFRKLNTGAWAFLRPFSPLMWTVTACFFVVVGIVVWILEHRINDEFRGPPKRQVI 624 (938)
Q Consensus 545 ~~t~~r~~~v~fs~p~~~~~~~~lv~~~~~~~~~~~~l~PF~~~vW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 624 (938)
+.+++|.+.+.||.||...+.++++++..
T Consensus 70 ~~~~~r~~~~~~s~p~~~~~~~l~~~~~~--------------------------------------------------- 98 (227)
T 3tql_A 70 NITTARQKEVDFTDPYYTNSVSFIADKNT--------------------------------------------------- 98 (227)
T ss_dssp BCCTTGGGTEEECSCSBCCEEEEEEETTS---------------------------------------------------
T ss_pred cCCHhHHhheecccceeccceEEEEeCCC---------------------------------------------------
Confidence 99999999999999999999999988765
Q ss_pred hhhhHHHHHHHhhhhhhhhhhcccCccccchhHHHHHHHHHHHHHHhhhhhhhhhhhhcccccCCCCChHHhhhCCCCee
Q 002309 625 TILWFSLSTLFFAHIAIFVILAEENTVSTLGRLVLIIWLFVVLIINSSYTASLTSILTVQQLYSPINGIESLRKSDDPIG 704 (938)
Q Consensus 625 ~~~~~~~~~l~~~~~~~~~~~~~~~p~s~s~R~~~~~w~~~~lil~s~Yta~L~s~Lt~~~~~~~i~s~~dL~~~~~~i~ 704 (938)
+.+++++||. |++||
T Consensus 99 ---------------------------------------------------------------~~~~~~~dL~--g~~v~ 113 (227)
T 3tql_A 99 ---------------------------------------------------------------PLTLSKQGLK--GKIIG 113 (227)
T ss_dssp ---------------------------------------------------------------CCCCSTTTTT--TCEEE
T ss_pred ---------------------------------------------------------------CCCCCHHHhC--CCEEE
Confidence 3347899997 88999
Q ss_pred EEeCchHHHHHHHhcccccccccccCCHHHHHHHHhcCCCCCceEEEEecchhHHHHHhcCC--cEEEeCccccc-----
Q 002309 705 YQEGSFAEYYLSQELNISKSRLVALRTPEDYAKALKDGPGKGGVAAVVDERPYVELFLSSQC--SFRIVGQEFTK----- 777 (938)
Q Consensus 705 ~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~a~i~~~~~~~~~~~~~~--~l~~~~~~~~~----- 777 (938)
+..|+....++.+..... .+++.+.+.++++++|.+ |++|+++.+...+.+++++.. ++.+++..+..
T Consensus 114 ~~~g~~~~~~l~~~~~~~-~~~~~~~~~~~~~~~l~~----grvDa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (227)
T 3tql_A 114 VQGGTTFDSYLQDSFGNS-ITIQRYPSEEDALMDLTS----GRVDAVVGDTPLIKQWLKQNGRREYVLIGKPVNDPNYFG 188 (227)
T ss_dssp EETTSHHHHHHHHHHGGG-SEEEEESSHHHHHHHHTT----TSSSEEESCHHHHHHHHHHTTCCSEEEEEEECCCGGGCC
T ss_pred EEecccHHHHHHHhcccc-ceEEEcCCHHHHHHHHHc----CCcCEEEeChHHHHHHHHhCCCCCEEEecCcccCccccc
Confidence 999999888886543211 567778999999999999 999999999999988888765 37776544333
Q ss_pred cceEeeecCCCc-chhhHHHHHHhhhccCcHHHHHHhhc
Q 002309 778 SGWGFAFPRDSP-LAVDLSSAILELAENGDLQRIHDKWL 815 (938)
Q Consensus 778 ~~~~~~~~k~sp-l~~~i~~~il~l~e~G~~~~l~~~w~ 815 (938)
.+++++++|++| ++..||++|.++.++|.+++|.++|+
T Consensus 189 ~~~~~~~~~~~~~l~~~l~~~l~~l~~~g~~~~i~~k~~ 227 (227)
T 3tql_A 189 KGVGIAVKKGNQALLLKLNKALAAIKANGVYAAIVQKYF 227 (227)
T ss_dssp SCBCCEEETTCHHHHHHHHHHHHHHHHTSHHHHHHHHHC
T ss_pred cceEEEEcCCCHHHHHHHHHHHHHHHhCChHHHHHHhhC
Confidence 355999999988 99999999999999999999999996
No 55
>1ii5_A SLR1257 protein; membrane protein; HET: GLU; 1.60A {Synechocystis SP} SCOP: c.94.1.1 PDB: 1iit_A 1iiw_A
Probab=99.85 E-value=1.7e-20 Score=193.92 Aligned_cols=218 Identities=19% Similarity=0.357 Sum_probs=186.9
Q ss_pred CceeEEEecccccccceeee--ccCCcceEeeeHHHHHHHHHhCCCCccEEEEecCCCCCCCChhHHHHhhhcceecEEe
Q 002309 464 GKLLKIGVPNRASYREFVSK--VRGSDMFQGFCIDVFTAAVNLLPYAVPYQFVAFGDGHKNPSYTQLVDSITTGVFDAVV 541 (938)
Q Consensus 464 g~~lrv~~~~~~~~~~~~~~--~~~~~~~~G~~~dll~~la~~l~f~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~D~~~ 541 (938)
.++|||++. +|+||.+. +. ++.+.|+++|+++.+++++|+++ +++.. .+|..++.+|.+|++|+++
T Consensus 3 ~~~l~v~~~---~~~P~~~~~~~~-~g~~~G~~~dl~~~i~~~~g~~~--~~~~~------~~~~~~~~~l~~g~~D~~~ 70 (233)
T 1ii5_A 3 AMALKVGVV---GNPPFVFYGEGK-NAAFTGISLDVWRAVAESQKWNS--EYVRQ------NSISAGITAVAEGELDILI 70 (233)
T ss_dssp SCCEEEEEC---CCTTTCEEC------CEESHHHHHHHHHHHHHTCCE--EEEEC------SCHHHHHHHHHTTSCSEEE
T ss_pred CceEEEEec---CCCCeEEEecCC-CCCEEEEeHHHHHHHHHHcCCcE--EEEEe------CCHHHHHHHHHCCCcCEEE
Confidence 357999997 37888876 33 68899999999999999999774 45442 2699999999999999999
Q ss_pred ccEeeecCce--eeeeeccceecccEEEEEeccCCCCCcceeeccCchhhHHHHHHHHHHHHhhhheeecccCCCCCCCc
Q 002309 542 GDITIVTNRT--KIVDFSQPYAASGLVVVVPFRKLNTGAWAFLRPFSPLMWTVTACFFVVVGIVVWILEHRINDEFRGPP 619 (938)
Q Consensus 542 ~~~~~t~~r~--~~v~fs~p~~~~~~~~lv~~~~~~~~~~~~l~PF~~~vW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 619 (938)
+.++.+.+|. +.++||.||+....++++++...
T Consensus 71 ~~~~~~~~r~~~~~~~~s~p~~~~~~~~~~~~~~~--------------------------------------------- 105 (233)
T 1ii5_A 71 GPISVTPERAAIEGITFTQPYFSSGIGLLIPGTAT--------------------------------------------- 105 (233)
T ss_dssp EEEECCHHHHTSTTEEECCCCEEEEEEEEEEGGGT---------------------------------------------
T ss_pred eeeecCccccccceeEEccceeecCeEEEEECCCC---------------------------------------------
Confidence 8888999998 99999999999999999987650
Q ss_pred cccchhhhhHHHHHHHhhhhhhhhhhcccCccccchhHHHHHHHHHHHHHHhhhhhhhhhhhhcccccCCCCChHHhhhC
Q 002309 620 KRQVITILWFSLSTLFFAHIAIFVILAEENTVSTLGRLVLIIWLFVVLIINSSYTASLTSILTVQQLYSPINGIESLRKS 699 (938)
Q Consensus 620 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~p~s~s~R~~~~~w~~~~lil~s~Yta~L~s~Lt~~~~~~~i~s~~dL~~~ 699 (938)
..|++++||.
T Consensus 106 --------------------------------------------------------------------~~i~~~~dL~-- 115 (233)
T 1ii5_A 106 --------------------------------------------------------------------PLFRSVGDLK-- 115 (233)
T ss_dssp --------------------------------------------------------------------TTCSSGGGGT--
T ss_pred --------------------------------------------------------------------CCCCCHHHhC--
Confidence 2788999998
Q ss_pred CCCeeEEeCchHHHHHHHhcccccccccccCCHHHHHHHHhcCCCCCceEEEEecchhHHHHHhcCC--cEEEeCccccc
Q 002309 700 DDPIGYQEGSFAEYYLSQELNISKSRLVALRTPEDYAKALKDGPGKGGVAAVVDERPYVELFLSSQC--SFRIVGQEFTK 777 (938)
Q Consensus 700 ~~~i~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~a~i~~~~~~~~~~~~~~--~l~~~~~~~~~ 777 (938)
+++|++..|+....++.+. ..+++.+.+.++++++|.+ |++|+++.+...+.+++++.. ++.+++..+..
T Consensus 116 g~~v~~~~g~~~~~~l~~~----~~~~~~~~~~~~~~~~l~~----g~vDa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (233)
T 1ii5_A 116 NKEVAVVRDTTAVDWANFY----QADVRETNNLTAAITLLQK----KQVEAVMFDRPALIYYTRQNPNLNLEVTEIRVSL 187 (233)
T ss_dssp TCEEEEETTSHHHHHHHHT----TCEEEEESSHHHHHHHHHT----TSCSEEEEEHHHHHHHHHHCGGGCEEECSCCSEE
T ss_pred CCeEEEECCccHHHHHHHc----CCCeEEcCCHHHHHHHHHc----CCccEEEeCHHHHHHHHHhCCCCcEEEeCccccc
Confidence 8899999999888888542 2456778899999999999 899999999999988887765 68888877777
Q ss_pred cceEeeecCCCcchhhHHHHHHhhhccCcHHHHHHhhcC
Q 002309 778 SGWGFAFPRDSPLAVDLSSAILELAENGDLQRIHDKWLM 816 (938)
Q Consensus 778 ~~~~~~~~k~spl~~~i~~~il~l~e~G~~~~l~~~w~~ 816 (938)
.+++++++|++++...+|++|.+|.++|.+++|.+||+.
T Consensus 188 ~~~~~~~~k~~~l~~~~~~~l~~l~~~g~~~~i~~k~~~ 226 (233)
T 1ii5_A 188 EPYGFVLKENSPLQKTINVEMLNLLYSRVIAEFTERWLG 226 (233)
T ss_dssp EEEEEEEETTCTTHHHHHHHHHHHHHTTHHHHHHHHHHC
T ss_pred cceEEEEcCCchHHHHHHHHHHHHHhCCcHHHHHHHHcC
Confidence 889999999999999999999999999999999999997
No 56
>4eq9_A ABC transporter substrate-binding protein-amino A transport; structural genomics, niaid; HET: GSH; 1.40A {Streptococcus pneumoniae}
Probab=99.84 E-value=1.2e-20 Score=196.89 Aligned_cols=225 Identities=15% Similarity=0.217 Sum_probs=189.3
Q ss_pred CceeEEEecccccccceeeeccCCcceEeeeHHHHHHHHHhCC-CCccEEEEecCCCCCCCChhHHHHhhhcceecEEec
Q 002309 464 GKLLKIGVPNRASYREFVSKVRGSDMFQGFCIDVFTAAVNLLP-YAVPYQFVAFGDGHKNPSYTQLVDSITTGVFDAVVG 542 (938)
Q Consensus 464 g~~lrv~~~~~~~~~~~~~~~~~~~~~~G~~~dll~~la~~l~-f~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~D~~~~ 542 (938)
.++|||++.. .|+||.+. . ++++.|+++||++.+++++| +++++... +|..++.+|.+|++|++++
T Consensus 7 ~~~l~v~~~~--~~~P~~~~-~-~g~~~G~~~dl~~~i~~~~g~~~~~~~~~---------~~~~~~~~l~~g~~D~~~~ 73 (246)
T 4eq9_A 7 KKEIIVATNG--SPRPFIYE-E-NGELTGYEIEVVRAIFKDSDKYDVKFEKT---------EWSGVFAGLDADRYNMAVN 73 (246)
T ss_dssp CEEEEEEECC--CSTTTSEE-E-TTEEESHHHHHHHHHHTTCSSEEEEEEEC---------CHHHHHHHHHTTSCSEECS
T ss_pred CCEEEEEeCC--CcCCeEEc-C-CCCCcccHHHHHHHHHHHcCCceEEEEeC---------CHHHHHHHHhCCCcCEEec
Confidence 4689999986 67888884 3 78999999999999999999 88555443 4999999999999999998
Q ss_pred cEeeecCceeeeeeccceecccEEEEEeccCCCCCcceeeccCchhhHHHHHHHHHHHHhhhheeecccCCCCCCCcccc
Q 002309 543 DITIVTNRTKIVDFSQPYAASGLVVVVPFRKLNTGAWAFLRPFSPLMWTVTACFFVVVGIVVWILEHRINDEFRGPPKRQ 622 (938)
Q Consensus 543 ~~~~t~~r~~~v~fs~p~~~~~~~~lv~~~~~~~~~~~~l~PF~~~vW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 622 (938)
+++.+++|.+.+.||.||+..+.++++++..
T Consensus 74 ~~~~~~~r~~~~~~s~p~~~~~~~~~~~~~~------------------------------------------------- 104 (246)
T 4eq9_A 74 NLSYTKERAEKYLYAAPIAQNPNVLVVKKDD------------------------------------------------- 104 (246)
T ss_dssp SCCCCHHHHHHEEECCCCEECCEEEEEETTC-------------------------------------------------
T ss_pred ccccChhhhhceeeccceecCceEEEEECCC-------------------------------------------------
Confidence 8999999999999999999999999998744
Q ss_pred chhhhhHHHHHHHhhhhhhhhhhcccCccccchhHHHHHHHHHHHHHHhhhhhhhhhhhhcccccCCCCChHHhhhCCCC
Q 002309 623 VITILWFSLSTLFFAHIAIFVILAEENTVSTLGRLVLIIWLFVVLIINSSYTASLTSILTVQQLYSPINGIESLRKSDDP 702 (938)
Q Consensus 623 ~~~~~~~~~~~l~~~~~~~~~~~~~~~p~s~s~R~~~~~w~~~~lil~s~Yta~L~s~Lt~~~~~~~i~s~~dL~~~~~~ 702 (938)
.+|++++||. |++
T Consensus 105 -----------------------------------------------------------------~~i~~~~dL~--g~~ 117 (246)
T 4eq9_A 105 -----------------------------------------------------------------SSIKSLDDIG--GKS 117 (246)
T ss_dssp -----------------------------------------------------------------CSCSSGGGCT--TCE
T ss_pred -----------------------------------------------------------------CCCCCHHHhC--CCE
Confidence 4788999998 889
Q ss_pred eeEEeCchHHHHHHH---hccccccccc-ccCCHHHHHHHHhcCCCCCceEEEEecchhHHHHHhcCC--cEEEeCcccc
Q 002309 703 IGYQEGSFAEYYLSQ---ELNISKSRLV-ALRTPEDYAKALKDGPGKGGVAAVVDERPYVELFLSSQC--SFRIVGQEFT 776 (938)
Q Consensus 703 i~~~~~s~~~~~~~~---~~~~~~~~~~-~~~~~~~~~~~l~~~~~~g~~~a~i~~~~~~~~~~~~~~--~l~~~~~~~~ 776 (938)
||+..|+....++.+ ........+. ...+.++++++|.+ |++|+++.+...+.+++++.. ++.++.....
T Consensus 118 i~~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~----g~vDa~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (246)
T 4eq9_A 118 TEVVQATTSAKQLEAYNAEHTDNPTILNYTKADFQQIMVRLSD----GQFDYKIFDKIGVETVIKNQGLDNLKVIELPSD 193 (246)
T ss_dssp EEECTTCHHHHHHHHHHHHCTTSCCEEEECCCCHHHHHHHHHT----TSSSEEEEEHHHHHHHHHHHTCTTEEEEECCCS
T ss_pred EEEecCccHHHHHHHHHhhCCCcceEEEecCCCHHHHHHHHHc----CCceEEEecHHHHHHHHHhCCCCCceEecCcCC
Confidence 999999988888755 2221112233 23588999999999 999999999999998887754 6888876666
Q ss_pred ccc-eEeeecCCCc-chhhHHHHHHhhhccCcHHHHHHhhcCCCCCC
Q 002309 777 KSG-WGFAFPRDSP-LAVDLSSAILELAENGDLQRIHDKWLMKSSCS 821 (938)
Q Consensus 777 ~~~-~~~~~~k~sp-l~~~i~~~il~l~e~G~~~~l~~~w~~~~~c~ 821 (938)
..+ ++++++|++| ++..||++|.++.++|.+++|.++|+....++
T Consensus 194 ~~~~~~~~~~k~~~~l~~~ln~~l~~l~~~g~~~~i~~k~~~~~~~p 240 (246)
T 4eq9_A 194 QQPYVYPLLAQGQDELKSFVDKRIKELYKDGTLEKLSKQFFGDTYLP 240 (246)
T ss_dssp SCCEECCEEETTCHHHHHHHHHHHHHHHHTTHHHHHHHHHHSSCCCC
T ss_pred CCCcEEEEEcCCCHHHHHHHHHHHHHHHhCCcHHHHHHHhcCCCCCC
Confidence 555 8999999998 99999999999999999999999999854443
No 57
>3h7m_A Sensor protein; histidine kinase sensor domain, kinase, phosphoprotein, transferase; 2.40A {Geobacter sulfurreducens} SCOP: c.94.1.0
Probab=99.84 E-value=2.8e-20 Score=192.39 Aligned_cols=219 Identities=18% Similarity=0.330 Sum_probs=190.8
Q ss_pred CCceeEEEecccccccceeeeccCCcceEeeeHHHHHHHHHhCCCCccEEEEecCCCCCCCChhHHHHhhhcceecEEec
Q 002309 463 NGKLLKIGVPNRASYREFVSKVRGSDMFQGFCIDVFTAAVNLLPYAVPYQFVAFGDGHKNPSYTQLVDSITTGVFDAVVG 542 (938)
Q Consensus 463 ~g~~lrv~~~~~~~~~~~~~~~~~~~~~~G~~~dll~~la~~l~f~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~D~~~~ 542 (938)
..++|||++.. .|+||.+.+. ++.+.|+++|+++.+++++|++++++.. +|..++.+|.+|++|++ .
T Consensus 9 ~~~~l~v~~~~--~~~P~~~~~~-~g~~~G~~~dl~~~i~~~~g~~~~~~~~---------~~~~~~~~l~~g~~D~~-~ 75 (234)
T 3h7m_A 9 RHRTIVVGGDR--DYPPYEFIDQ-NGKPAGYNVELTRAIAEVMGMTVEFRLG---------AWSEMFSALKSGRVDVL-Q 75 (234)
T ss_dssp SSSCEEEEEET--EETTTEEECT-TSCEESHHHHHHHHHHHHHTCCEEEEEE---------CGGGHHHHHHTTSSSEE-E
T ss_pred CCCEEEEEecC--CCCCeEEECC-CCCEeeeEHHHHHHHHHHcCCceEEEeC---------CHHHHHHHHhCCCeeEE-E
Confidence 45789999964 6899998764 7889999999999999999988666543 49999999999999995 6
Q ss_pred cEeeecCceeeeeeccceecccEEEEEeccCCCCCcceeeccCchhhHHHHHHHHHHHHhhhheeecccCCCCCCCcccc
Q 002309 543 DITIVTNRTKIVDFSQPYAASGLVVVVPFRKLNTGAWAFLRPFSPLMWTVTACFFVVVGIVVWILEHRINDEFRGPPKRQ 622 (938)
Q Consensus 543 ~~~~t~~r~~~v~fs~p~~~~~~~~lv~~~~~~~~~~~~l~PF~~~vW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 622 (938)
+++.+++|.+.+.||.|+.....++++++..
T Consensus 76 ~~~~~~~r~~~~~~s~p~~~~~~~~~~~~~~------------------------------------------------- 106 (234)
T 3h7m_A 76 GISWSEKRARQIDFTPPHTIVYHAIFARRDS------------------------------------------------- 106 (234)
T ss_dssp EEECCHHHHTTEEEEEEEEEEEEEEEEESSS-------------------------------------------------
T ss_pred eccCCHhHHhhcCCCccccccceEEEEECCC-------------------------------------------------
Confidence 7889999999999999999999999988765
Q ss_pred chhhhhHHHHHHHhhhhhhhhhhcccCccccchhHHHHHHHHHHHHHHhhhhhhhhhhhhcccccCCCCChHHhhhCCCC
Q 002309 623 VITILWFSLSTLFFAHIAIFVILAEENTVSTLGRLVLIIWLFVVLIINSSYTASLTSILTVQQLYSPINGIESLRKSDDP 702 (938)
Q Consensus 623 ~~~~~~~~~~~l~~~~~~~~~~~~~~~p~s~s~R~~~~~w~~~~lil~s~Yta~L~s~Lt~~~~~~~i~s~~dL~~~~~~ 702 (938)
+.+++++||. +++
T Consensus 107 -----------------------------------------------------------------~~~~~~~dL~--g~~ 119 (234)
T 3h7m_A 107 -----------------------------------------------------------------PPAAGLEDLR--GRK 119 (234)
T ss_dssp -----------------------------------------------------------------CCCSSGGGGT--TSC
T ss_pred -----------------------------------------------------------------CCCCCHHHhC--CCE
Confidence 4588999997 889
Q ss_pred eeEEeCchHHHHHHHhcccccccccccCCHHHHHHHHhcCCCCCceEEEEecchhHHHHHhcC--CcEEEeCccccccce
Q 002309 703 IGYQEGSFAEYYLSQELNISKSRLVALRTPEDYAKALKDGPGKGGVAAVVDERPYVELFLSSQ--CSFRIVGQEFTKSGW 780 (938)
Q Consensus 703 i~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~a~i~~~~~~~~~~~~~--~~l~~~~~~~~~~~~ 780 (938)
||+..|+....++.+.. +..+++.+.+.++++++|.+ |++|+++.+...+.+++++. .++..++..+...++
T Consensus 120 i~~~~g~~~~~~l~~~~--~~~~~~~~~~~~~~~~~l~~----g~vDa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (234)
T 3h7m_A 120 VALHRDGIMHEYLAERG--YGKDLVLTPTPADALRLLAA----GGCDYAVVAMVPGMYIIRENRLTNLVPVARSIAAQRY 193 (234)
T ss_dssp EEEETTSHHHHHHHTTT--CGGGEEEESSHHHHHHHHHT----TSSSEEEEEHHHHHHHHHHTTCTTEEEEEEEEEEEEE
T ss_pred EEEEeCchHHHHHHhcC--CCceEEEeCCHHHHHHHHHc----CCceEEEeccHHHHHHHHhcCCCceEEeccccCCCce
Confidence 99999998888885432 23567778999999999999 99999999999988887764 368888777788889
Q ss_pred EeeecCCCc-chhhHHHHHHhhhccCcHHHHHHhhcC
Q 002309 781 GFAFPRDSP-LAVDLSSAILELAENGDLQRIHDKWLM 816 (938)
Q Consensus 781 ~~~~~k~sp-l~~~i~~~il~l~e~G~~~~l~~~w~~ 816 (938)
+++++|++| ++..||++|.++.++|.+++|.++|+.
T Consensus 194 ~~~~~~~~~~l~~~l~~~l~~l~~~g~~~~i~~k~~~ 230 (234)
T 3h7m_A 194 GYAVRQGDAELLARFSEGLAILRKTGQYEAIRAKWLG 230 (234)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHHHTHHHHHHHHSTT
T ss_pred EEEEeCCCHHHHHHHHHHHHHHHHcCcHHHHHHHhcc
Confidence 999999988 999999999999999999999999997
No 58
>1lst_A Lysine, arginine, ornithine-binding protein; amino-acid binding protein; HET: LYS; 1.80A {Salmonella typhimurium} SCOP: c.94.1.1 PDB: 2lao_A 1lag_E* 1lah_E 1laf_E 1hsl_A* 1hpb_P*
Probab=99.83 E-value=3.5e-20 Score=192.38 Aligned_cols=222 Identities=21% Similarity=0.355 Sum_probs=184.3
Q ss_pred CceeEEEecccccccceeeeccCCcceEeeeHHHHHHHHHhCCCCccEEEEecCCCCCCCChhHHHHhhhcceecEEecc
Q 002309 464 GKLLKIGVPNRASYREFVSKVRGSDMFQGFCIDVFTAAVNLLPYAVPYQFVAFGDGHKNPSYTQLVDSITTGVFDAVVGD 543 (938)
Q Consensus 464 g~~lrv~~~~~~~~~~~~~~~~~~~~~~G~~~dll~~la~~l~f~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~D~~~~~ 543 (938)
.++|||++.. .|+||.+.+. ++++.|+++|+++++++++|++++ ++. .+|.+++.+|.+|++|+++++
T Consensus 3 ~~~l~v~~~~--~~~P~~~~~~-~g~~~G~~~dl~~~i~~~~g~~~~--~~~-------~~~~~~~~~l~~g~~D~~~~~ 70 (239)
T 1lst_A 3 PQTVRIGTDT--TYAPFSSKDA-KGEFIGFDIDLGNEMCKRMQVKCT--WVA-------SDFDALIPSLKAKKIDAIISS 70 (239)
T ss_dssp CSEEEEEECS--CBTTTBEECT-TCCEESHHHHHHHHHHHHHTCEEE--EEE-------CCGGGHHHHHHTTSCSEECSS
T ss_pred cceEEEEECC--CcCCeeEECC-CCCEeeEHHHHHHHHHHHHCCeEE--EEe-------CCHHHHHHHHhCCCCCEEEEC
Confidence 4679999954 7889988764 688999999999999999997744 444 359999999999999999988
Q ss_pred EeeecCceeeeeeccceecccEEEEEeccCCCCCcceeeccCchhhHHHHHHHHHHHHhhhheeecccCCCCCCCccccc
Q 002309 544 ITIVTNRTKIVDFSQPYAASGLVVVVPFRKLNTGAWAFLRPFSPLMWTVTACFFVVVGIVVWILEHRINDEFRGPPKRQV 623 (938)
Q Consensus 544 ~~~t~~r~~~v~fs~p~~~~~~~~lv~~~~~~~~~~~~l~PF~~~vW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 623 (938)
++.+++|.+.++||.||+..+.++++++..
T Consensus 71 ~~~t~~r~~~~~~s~p~~~~~~~l~~~~~~-------------------------------------------------- 100 (239)
T 1lst_A 71 LSITDKRQQEIAFSDKLYAADSRLIAAKGS-------------------------------------------------- 100 (239)
T ss_dssp CBCCHHHHHHCEECSCSBCCCEEEEEETTC--------------------------------------------------
T ss_pred cCcCHHHhhceeecccceeCceEEEEeCCC--------------------------------------------------
Confidence 899999999999999999999999998755
Q ss_pred hhhhhHHHHHHHhhhhhhhhhhcccCccccchhHHHHHHHHHHHHHHhhhhhhhhhhhhcccccCCCCChHHhhhCCCCe
Q 002309 624 ITILWFSLSTLFFAHIAIFVILAEENTVSTLGRLVLIIWLFVVLIINSSYTASLTSILTVQQLYSPINGIESLRKSDDPI 703 (938)
Q Consensus 624 ~~~~~~~~~~l~~~~~~~~~~~~~~~p~s~s~R~~~~~w~~~~lil~s~Yta~L~s~Lt~~~~~~~i~s~~dL~~~~~~i 703 (938)
+...+++||. |++|
T Consensus 101 ----------------------------------------------------------------~~~~~~~dL~--g~~v 114 (239)
T 1lst_A 101 ----------------------------------------------------------------PIQPTLESLK--GKHV 114 (239)
T ss_dssp ----------------------------------------------------------------CCCSSHHHHT--TCEE
T ss_pred ----------------------------------------------------------------CCCCCHHHhC--CCEE
Confidence 1225899997 8899
Q ss_pred eEEeCchHHHHHHHhcccccccccccCCHHHHHHHHhcCCCCCceEEEEecchhHHH-HHhcC--CcEEEeCccccc---
Q 002309 704 GYQEGSFAEYYLSQELNISKSRLVALRTPEDYAKALKDGPGKGGVAAVVDERPYVEL-FLSSQ--CSFRIVGQEFTK--- 777 (938)
Q Consensus 704 ~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~a~i~~~~~~~~-~~~~~--~~l~~~~~~~~~--- 777 (938)
|+..|+....++.+....+..+++.+.+.++.+++|.+ |++|+++.+...+.+ ++.+. .++.+++..+..
T Consensus 115 ~~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~----G~vDa~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 190 (239)
T 1lst_A 115 GVLQGSTQEAYANDNWRTKGVDVVAYANQDLIYSDLTA----GRLDAALQDEVAASEGFLKQPAGKEYAFAGPSVKDKKY 190 (239)
T ss_dssp EEETTSHHHHHHHHHTGGGTCEEEEESSHHHHHHHHHT----TSCSEEEEEHHHHHHHTTTSGGGTTEEECSSCBCCHHH
T ss_pred EEEcCccHHHHHHHhcccCCCeEEEcCCHHHHHHHHHc----CCCCEEEeCcHHHHHHHHhccCCCceEEeccccccccc
Confidence 99999988888865432223456778999999999999 899999999887754 44443 358777665443
Q ss_pred --cceEeeecCCCc-chhhHHHHHHhhhccCcHHHHHHhhcCC
Q 002309 778 --SGWGFAFPRDSP-LAVDLSSAILELAENGDLQRIHDKWLMK 817 (938)
Q Consensus 778 --~~~~~~~~k~sp-l~~~i~~~il~l~e~G~~~~l~~~w~~~ 817 (938)
.+++++++|++| +...+|++|.++.++|.+++|.++|+..
T Consensus 191 ~~~~~~~~~~k~~~~l~~~~~~~l~~l~~~G~~~~i~~k~~~~ 233 (239)
T 1lst_A 191 FGDGTGVGLRKDDTELKAAFDKALTELRQDGTYDKMAKKYFDF 233 (239)
T ss_dssp HCSSBCCEECTTCHHHHHHHHHHHHHHHHTTHHHHHHHTTCSS
T ss_pred cCcceEEEEeCCCHHHHHHHHHHHHHHHHCccHHHHHHHHcCC
Confidence 368999999998 9999999999999999999999999984
No 59
>3mpk_A Virulence sensor protein BVGS; venus flytrap, sensor domain, signaling protein; 2.04A {Bordetella pertussis} PDB: 3mpl_A
Probab=99.83 E-value=3.6e-20 Score=195.95 Aligned_cols=220 Identities=17% Similarity=0.278 Sum_probs=188.7
Q ss_pred CCceeEEEecccccccceeeeccCCcceEeeeHHHHHHHHHhCCCCccEEEEecCCCCCCCChhHHHHhhhcceecEEec
Q 002309 463 NGKLLKIGVPNRASYREFVSKVRGSDMFQGFCIDVFTAAVNLLPYAVPYQFVAFGDGHKNPSYTQLVDSITTGVFDAVVG 542 (938)
Q Consensus 463 ~g~~lrv~~~~~~~~~~~~~~~~~~~~~~G~~~dll~~la~~l~f~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~D~~~~ 542 (938)
..++|||++.. .|+||.+.+. ++++.|+++|+++++++++|++++ +++. .+|..++.+|.+|++|++.
T Consensus 30 ~~~~l~v~~~~--~~~P~~~~~~-~g~~~G~~~dl~~~i~~~lg~~~~--~~~~------~~~~~~~~~l~~G~~D~~~- 97 (267)
T 3mpk_A 30 DHPVVKVAVLN--LFAPFTLFRT-DEQFGGISAAVLQLLQLRTGLDFE--IIGV------DTVEELIAKLRSGEADMAG- 97 (267)
T ss_dssp HCSEEEEEEET--EETTTEECCT-TCCCBSHHHHHHHHHHHHHCCEEE--EEEE------SSHHHHHHHHHHTSCSEEE-
T ss_pred hCCcEEEEeCC--CCCCeEEECC-CCcEeeeHHHHHHHHHHHHCCeEE--EEec------CCHHHHHHHHHCCCccEEe-
Confidence 35789999975 6899998765 688999999999999999997754 4432 4699999999999999976
Q ss_pred cEeeecCceeeeeeccceecccEEEEEeccCCCCCcceeeccCchhhHHHHHHHHHHHHhhhheeecccCCCCCCCcccc
Q 002309 543 DITIVTNRTKIVDFSQPYAASGLVVVVPFRKLNTGAWAFLRPFSPLMWTVTACFFVVVGIVVWILEHRINDEFRGPPKRQ 622 (938)
Q Consensus 543 ~~~~t~~r~~~v~fs~p~~~~~~~~lv~~~~~~~~~~~~l~PF~~~vW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 622 (938)
+++.+++|.+.+.||.||...+.++++++..
T Consensus 98 ~~~~t~~r~~~~~fs~p~~~~~~~l~~~~~~------------------------------------------------- 128 (267)
T 3mpk_A 98 ALFVNSARESFLSFSRPYVRNGMVIVTRQDP------------------------------------------------- 128 (267)
T ss_dssp EEECCGGGTTTEEECSCSEEECEEEEEESST-------------------------------------------------
T ss_pred cccCChhhhcceEechhhccCceEEEEECCC-------------------------------------------------
Confidence 7999999999999999999999999998765
Q ss_pred chhhhhHHHHHHHhhhhhhhhhhcccCccccchhHHHHHHHHHHHHHHhhhhhhhhhhhhcccccCCCCChHHhhhCCCC
Q 002309 623 VITILWFSLSTLFFAHIAIFVILAEENTVSTLGRLVLIIWLFVVLIINSSYTASLTSILTVQQLYSPINGIESLRKSDDP 702 (938)
Q Consensus 623 ~~~~~~~~~~~l~~~~~~~~~~~~~~~p~s~s~R~~~~~w~~~~lil~s~Yta~L~s~Lt~~~~~~~i~s~~dL~~~~~~ 702 (938)
+.|++++||. |++
T Consensus 129 -----------------------------------------------------------------~~i~~~~dL~--g~~ 141 (267)
T 3mpk_A 129 -----------------------------------------------------------------DAPVDADHLD--GRT 141 (267)
T ss_dssp -----------------------------------------------------------------TSCSSGGGCT--TCE
T ss_pred -----------------------------------------------------------------CCCCCHHHHC--CCE
Confidence 4678999998 899
Q ss_pred eeEEeCchHHHHHHHhcccccccccccCCHHHHHHHHhcCCCCCceEEEEecchhHHHHHhc--CCcEEEeCccc-cccc
Q 002309 703 IGYQEGSFAEYYLSQELNISKSRLVALRTPEDYAKALKDGPGKGGVAAVVDERPYVELFLSS--QCSFRIVGQEF-TKSG 779 (938)
Q Consensus 703 i~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~a~i~~~~~~~~~~~~--~~~l~~~~~~~-~~~~ 779 (938)
||+..|+....++.+.. +..+++.+++.++++++|.+ |++||++.+...+.+++++ ..++.+.+... ...+
T Consensus 142 i~v~~g~~~~~~l~~~~--~~~~~~~~~~~~~~l~~L~~----GrvDa~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 215 (267)
T 3mpk_A 142 VALVRNSAAIPLLQRRY--PQAKVVTADNPSEAMLMVAN----GQADAVVQTQISASYYVNRYFAGKLRIASALDLPPAE 215 (267)
T ss_dssp EEEETTCTHHHHHHHHC--TTSEEEEESSHHHHHHHHHH----TSCSEEEEEHHHHHHHHHHHCTTTEEEEEECSSCCEE
T ss_pred EEEeCCchhHHHHHHhC--CCcEEEEeCCHHHHHHHHHc----CCCCEEEecHHHHHHHHHhcCCCceEEEeccCCCcee
Confidence 99999999888886543 34577788999999999999 9999999999999888887 44677776533 4678
Q ss_pred eEeeecCCCc-chhhHHHHHHhhhccCcHHHHHHhhcCC
Q 002309 780 WGFAFPRDSP-LAVDLSSAILELAENGDLQRIHDKWLMK 817 (938)
Q Consensus 780 ~~~~~~k~sp-l~~~i~~~il~l~e~G~~~~l~~~w~~~ 817 (938)
++++++|++| +...||++|.++.++| +++|.+||+..
T Consensus 216 ~~~~~~k~~~~l~~~ln~~l~~l~~~~-~~~i~~kw~~~ 253 (267)
T 3mpk_A 216 IALATTRGQTELMSILNKALYSISNDE-LASIISRWRGS 253 (267)
T ss_dssp EEEEEETTCHHHHHHHHHHHHTSCHHH-HHHHHHTTC--
T ss_pred EEEEEcCCCHHHHHHHHHHHHhCCHHH-HHHHHHhhccC
Confidence 9999999998 9999999999999996 99999999983
No 60
>1wdn_A GLNBP, glutamine binding protein; closed form, complex, peptide, complex (binding protein/peptide); 1.94A {Escherichia coli} SCOP: c.94.1.1 PDB: 1ggg_A
Probab=99.83 E-value=6.7e-20 Score=188.31 Aligned_cols=217 Identities=24% Similarity=0.437 Sum_probs=187.5
Q ss_pred ceeEEEecccccccceeeeccCCcceEeeeHHHHHHHHHhCCCCccEEEEecCCCCCCCChhHHHHhhhcceecEEeccE
Q 002309 465 KLLKIGVPNRASYREFVSKVRGSDMFQGFCIDVFTAAVNLLPYAVPYQFVAFGDGHKNPSYTQLVDSITTGVFDAVVGDI 544 (938)
Q Consensus 465 ~~lrv~~~~~~~~~~~~~~~~~~~~~~G~~~dll~~la~~l~f~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~D~~~~~~ 544 (938)
++|||++.. .|+||.+.+ ++++.|+++|+++.+++++|+++++... +|..++.+|.+|++|++++++
T Consensus 3 ~~l~v~~~~--~~~P~~~~~--~g~~~G~~~dl~~~~~~~~g~~~~~~~~---------~~~~~~~~l~~g~~D~~~~~~ 69 (226)
T 1wdn_A 3 KKLVVATDT--AFVPFEFKQ--GDLYVGFDVDLWAAIAKELKLDYELKPM---------DFSGIIPALQTKNVDLALAGI 69 (226)
T ss_dssp -CEEEEEES--SBTTTBEEE--TTEEESHHHHHHHHHHHHHTCCEEEEEE---------CGGGHHHHHHTTSSSEEEEEE
T ss_pred ceEEEEECC--CCCCeeEec--CCcEEEeeHHHHHHHHHHhCCEEEEEEC---------CHHHHHHHHhCCCCCEEEEcC
Confidence 469999984 788888876 3789999999999999999977555543 499999999999999998888
Q ss_pred eeecCceeeeeeccceecccEEEEEeccCCCCCcceeeccCchhhHHHHHHHHHHHHhhhheeecccCCCCCCCccccch
Q 002309 545 TIVTNRTKIVDFSQPYAASGLVVVVPFRKLNTGAWAFLRPFSPLMWTVTACFFVVVGIVVWILEHRINDEFRGPPKRQVI 624 (938)
Q Consensus 545 ~~t~~r~~~v~fs~p~~~~~~~~lv~~~~~~~~~~~~l~PF~~~vW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 624 (938)
..+++|.+.+.|+.||.....++++++..
T Consensus 70 ~~~~~r~~~~~~~~p~~~~~~~~~~~~~~--------------------------------------------------- 98 (226)
T 1wdn_A 70 TITDERKKAIDFSDGYYKSGLLVMVKANN--------------------------------------------------- 98 (226)
T ss_dssp ECCHHHHTTSEECSCCEEEEEEEEEETTC---------------------------------------------------
T ss_pred cCCHHHhCccccccchhcCceEEEEeCCC---------------------------------------------------
Confidence 88999999999999999999999988655
Q ss_pred hhhhHHHHHHHhhhhhhhhhhcccCccccchhHHHHHHHHHHHHHHhhhhhhhhhhhhcccccCCCCChHHhhhCCCCee
Q 002309 625 TILWFSLSTLFFAHIAIFVILAEENTVSTLGRLVLIIWLFVVLIINSSYTASLTSILTVQQLYSPINGIESLRKSDDPIG 704 (938)
Q Consensus 625 ~~~~~~~~~l~~~~~~~~~~~~~~~p~s~s~R~~~~~w~~~~lil~s~Yta~L~s~Lt~~~~~~~i~s~~dL~~~~~~i~ 704 (938)
+.|++++||. |++|+
T Consensus 99 ---------------------------------------------------------------~~i~~~~dL~--g~~i~ 113 (226)
T 1wdn_A 99 ---------------------------------------------------------------NDVKSVKDLD--GKVVA 113 (226)
T ss_dssp ---------------------------------------------------------------CSCSSSTTTT--TCEEE
T ss_pred ---------------------------------------------------------------CCCCCHHHhC--CCEEE
Confidence 3578999997 88999
Q ss_pred EEeCchHHHHHHHhcccccccccccCCHHHHHHHHhcCCCCCceEEEEecchhHHHHHhcC--CcEEEeCccccccceEe
Q 002309 705 YQEGSFAEYYLSQELNISKSRLVALRTPEDYAKALKDGPGKGGVAAVVDERPYVELFLSSQ--CSFRIVGQEFTKSGWGF 782 (938)
Q Consensus 705 ~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~a~i~~~~~~~~~~~~~--~~l~~~~~~~~~~~~~~ 782 (938)
+..|+....++.+.. +..+++.+.+.++.+++|.+ |++|+++.+...+.++.++. .++.+++..+...++++
T Consensus 114 ~~~g~~~~~~l~~~~--~~~~~~~~~~~~~~~~~l~~----g~vDa~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 187 (226)
T 1wdn_A 114 VKSGTGSVDYAKANI--KTKDLRQFPNIDNAYMELGT----NRADAVLHDTPNILYFIKTAGNGQFKAVGDSLEAQQYGI 187 (226)
T ss_dssp EETTSHHHHHHHHHC--CCSEEEEESSHHHHHHHHHT----TSCSEEEEEHHHHHHHHHTTTTTTEEEEEEEEEEEEEEE
T ss_pred EEcCCcHHHHHHHhC--CCceEEEeCCHHHHHHHHHc----CCcCEEEeCcHHHHHHHHhCCCCceEEecCCcccCceEE
Confidence 999998888885542 23456678899999999999 89999999999988887775 36888777677778999
Q ss_pred eecCCCc-chhhHHHHHHhhhccCcHHHHHHhhcC
Q 002309 783 AFPRDSP-LAVDLSSAILELAENGDLQRIHDKWLM 816 (938)
Q Consensus 783 ~~~k~sp-l~~~i~~~il~l~e~G~~~~l~~~w~~ 816 (938)
+++|++| +...+|++|.++.++|.+++|.++|+.
T Consensus 188 ~~~k~~~~l~~~~~~~l~~l~~~g~~~~i~~k~~~ 222 (226)
T 1wdn_A 188 AFPKGSDELRDKVNGALKTLRENGTYNEIYKKWFG 222 (226)
T ss_dssp EECTTCHHHHHHHHHHHHHHHHTSHHHHHHHHHHS
T ss_pred EEeCCCHHHHHHHHHHHHHHHhCChHHHHHHHHcC
Confidence 9999986 999999999999999999999999987
No 61
>4dz1_A DALS D-alanine transporter; D-alanine binding, periplasmic, transport protein; 1.90A {Salmonella enterica} PDB: 3r39_A 4f3s_A
Probab=99.83 E-value=7.3e-20 Score=192.64 Aligned_cols=223 Identities=20% Similarity=0.320 Sum_probs=189.3
Q ss_pred CCceeEEEecccccccceeeeccCCcceEeeeHHHHHHHHHhCCCCccEEEEecCCCCCCCChhHHHHhhhcceecEEec
Q 002309 463 NGKLLKIGVPNRASYREFVSKVRGSDMFQGFCIDVFTAAVNLLPYAVPYQFVAFGDGHKNPSYTQLVDSITTGVFDAVVG 542 (938)
Q Consensus 463 ~g~~lrv~~~~~~~~~~~~~~~~~~~~~~G~~~dll~~la~~l~f~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~D~~~~ 542 (938)
..++|+|++.. .|+||.+.+. ++.+.|+++|+++.+++++|++ ++++. .+|..++.+|.+|++|++++
T Consensus 27 ~~~~l~v~~~~--~~~P~~~~~~-~g~~~G~~~dl~~~i~~~~g~~--~~~~~-------~~~~~~~~~l~~g~~D~~~~ 94 (259)
T 4dz1_A 27 EGRTLNVAVSP--ASPPMLFKSA-DGKLQGIDLELFSSYCQSRHCK--LNITE-------YAWDGMLGAVASGQADVAFS 94 (259)
T ss_dssp TTCEEEEEECC--CBTTTBEECT-TCCEESHHHHHHHHHHHHHTCE--EEEEE-------CCHHHHHHHHHHTSSSEEEE
T ss_pred cCCeEEEEECC--CCCCeEEECC-CCCEEEeHHHHHHHHHHHhCCe--EEEEE-------cCHHHHHHHHhCCCCCEEEE
Confidence 45789999974 6889988764 7889999999999999999977 45554 35999999999999999988
Q ss_pred cEeeecCceeeeeeccceecccEEEEEeccCCCCCcceeeccCchhhHHHHHHHHHHHHhhhheeecccCCCCCCCcccc
Q 002309 543 DITIVTNRTKIVDFSQPYAASGLVVVVPFRKLNTGAWAFLRPFSPLMWTVTACFFVVVGIVVWILEHRINDEFRGPPKRQ 622 (938)
Q Consensus 543 ~~~~t~~r~~~v~fs~p~~~~~~~~lv~~~~~~~~~~~~l~PF~~~vW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 622 (938)
+++.+++|.+.++||.||+..+..+++++...
T Consensus 95 ~~~~t~~r~~~~~fs~p~~~~~~~~~~~~~~~------------------------------------------------ 126 (259)
T 4dz1_A 95 GISITDKRKKVIDFSEPYYINSFYLVSMANHK------------------------------------------------ 126 (259)
T ss_dssp EEECCHHHHTTEEECCCSEEEEEEEEEETTSC------------------------------------------------
T ss_pred CCcCCHHHhhccccccchhhCceEEEEEcCCC------------------------------------------------
Confidence 89999999999999999999999999987651
Q ss_pred chhhhhHHHHHHHhhhhhhhhhhcccCccccchhHHHHHHHHHHHHHHhhhhhhhhhhhhcccccCCCCChHHhhhCCCC
Q 002309 623 VITILWFSLSTLFFAHIAIFVILAEENTVSTLGRLVLIIWLFVVLIINSSYTASLTSILTVQQLYSPINGIESLRKSDDP 702 (938)
Q Consensus 623 ~~~~~~~~~~~l~~~~~~~~~~~~~~~p~s~s~R~~~~~w~~~~lil~s~Yta~L~s~Lt~~~~~~~i~s~~dL~~~~~~ 702 (938)
..|++++||. |++
T Consensus 127 -----------------------------------------------------------------~~i~~~~dL~--g~~ 139 (259)
T 4dz1_A 127 -----------------------------------------------------------------ITLNNLNELN--KYS 139 (259)
T ss_dssp -----------------------------------------------------------------CCCCSGGGGG--GSC
T ss_pred -----------------------------------------------------------------CCCCCHHHhC--CCE
Confidence 4788999998 889
Q ss_pred eeEEeCchHHHHHHHhccc---cc-ccccccCCHHHHHHHHhcCCCCCceEEEEecchhHHHHHhcC-CcEEEeCccccc
Q 002309 703 IGYQEGSFAEYYLSQELNI---SK-SRLVALRTPEDYAKALKDGPGKGGVAAVVDERPYVELFLSSQ-CSFRIVGQEFTK 777 (938)
Q Consensus 703 i~~~~~s~~~~~~~~~~~~---~~-~~~~~~~~~~~~~~~l~~~~~~g~~~a~i~~~~~~~~~~~~~-~~l~~~~~~~~~ 777 (938)
||+..|+....++.+.... +. .+++.+.+.++++++|.+ |++||++.+...+.++.++. .++.........
T Consensus 140 v~v~~g~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~----G~vDa~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (259)
T 4dz1_A 140 IGYPRGMAYSDLIKNDLEPKGYYSLSKVKLYPTYNETMADLKN----GNLDLAFIEEPVYFTFKNKKKMPIESRYVFKNV 215 (259)
T ss_dssp EEEETTSTHHHHHHHHTGGGTSCCGGGCEEESSHHHHHHHHHH----TSCSEEEEEHHHHHHHHHTSCCCEEEEEEEEEE
T ss_pred EEEeCCcHHHHHHHHhcccccccccceeEecCCHHHHHHHHHc----CCCCEEEecHHHHHHHhccCCCceEeecccCCC
Confidence 9999999888888553321 11 466778999999999999 99999999998887776653 467666666667
Q ss_pred cceEeeecCCCcchhhHHHHHHhhhccCcHHHHHHhhcCC
Q 002309 778 SGWGFAFPRDSPLAVDLSSAILELAENGDLQRIHDKWLMK 817 (938)
Q Consensus 778 ~~~~~~~~k~spl~~~i~~~il~l~e~G~~~~l~~~w~~~ 817 (938)
.+++++++|+++++..||++|.+ ..++.++++.++|...
T Consensus 216 ~~~~~~~~k~~~l~~~ln~~l~~-~g~~~l~~~~~~~~~~ 254 (259)
T 4dz1_A 216 DQLGIAFKKGSPVRDDFNLWLKE-QGPQKISGIVDSWMKH 254 (259)
T ss_dssp EEEEEEEETTCHHHHHHHHHHHH-HCHHHHHHHHHHHTCC
T ss_pred ceEEEEEeCChHHHHHHHHHHHh-CCCeehHHHHHHHHhh
Confidence 88999999999999999999999 8888999999999873
No 62
>2y7i_A STM4351; arginine-binding protein; HET: ARG; 1.90A {Salmonella enterica subsp}
Probab=99.82 E-value=1.4e-19 Score=186.33 Aligned_cols=217 Identities=22% Similarity=0.390 Sum_probs=185.8
Q ss_pred CceeEEEecccccccceeeeccCCcceEeeeHHHHHHHHHhCCCCccEEEEecCCCCCCCChhHHHHhhhcceecEEecc
Q 002309 464 GKLLKIGVPNRASYREFVSKVRGSDMFQGFCIDVFTAAVNLLPYAVPYQFVAFGDGHKNPSYTQLVDSITTGVFDAVVGD 543 (938)
Q Consensus 464 g~~lrv~~~~~~~~~~~~~~~~~~~~~~G~~~dll~~la~~l~f~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~D~~~~~ 543 (938)
.++|||++.. .|+||.+.+. ++++.|+++|+++.+++++|++++ ++. .+|..++.+|.+|++|+++++
T Consensus 5 a~~l~v~~~~--~~~P~~~~~~-~g~~~G~~~dl~~~i~~~~g~~~~--~~~-------~~~~~~~~~l~~g~~D~~~~~ 72 (229)
T 2y7i_A 5 ARTLHFGTSA--TYAPYEFVDA-DNKIVGFDIDVANAVCKEMQAECS--FTN-------QSFDSLIPSLRFKKFDAVIAG 72 (229)
T ss_dssp CCEEEEEECC--CBTTTBEECT-TSCEESHHHHHHHHHHHHTTCEEE--EEE-------CCGGGHHHHHHTTSCSEECSS
T ss_pred CCcEEEEeCC--CcCCceEECC-CCCCcceeHHHHHHHHHHhCCeEE--EEE-------cCHHHHHHHHhCCCceEEEec
Confidence 5689999964 7889888764 688999999999999999997744 444 349999999999999999878
Q ss_pred EeeecCceeeeeeccceecc-cEEEEEeccCCCCCcceeeccCchhhHHHHHHHHHHHHhhhheeecccCCCCCCCcccc
Q 002309 544 ITIVTNRTKIVDFSQPYAAS-GLVVVVPFRKLNTGAWAFLRPFSPLMWTVTACFFVVVGIVVWILEHRINDEFRGPPKRQ 622 (938)
Q Consensus 544 ~~~t~~r~~~v~fs~p~~~~-~~~~lv~~~~~~~~~~~~l~PF~~~vW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 622 (938)
+..+++|.+.+.|+.|+... ..++++++.
T Consensus 73 ~~~~~~r~~~~~~s~p~~~~~~~~~~~~~~-------------------------------------------------- 102 (229)
T 2y7i_A 73 MDMTPKREQQVSFSQPYYEGLSAVVVTRKG-------------------------------------------------- 102 (229)
T ss_dssp CBCCHHHHTTSEECSCSBCCCCEEEEEETT--------------------------------------------------
T ss_pred CccCHHHhcceeeccccccCCcEEEEEeCC--------------------------------------------------
Confidence 88999999999999999999 888888642
Q ss_pred chhhhhHHHHHHHhhhhhhhhhhcccCccccchhHHHHHHHHHHHHHHhhhhhhhhhhhhcccccCCCCChHHhhhCCCC
Q 002309 623 VITILWFSLSTLFFAHIAIFVILAEENTVSTLGRLVLIIWLFVVLIINSSYTASLTSILTVQQLYSPINGIESLRKSDDP 702 (938)
Q Consensus 623 ~~~~~~~~~~~l~~~~~~~~~~~~~~~p~s~s~R~~~~~w~~~~lil~s~Yta~L~s~Lt~~~~~~~i~s~~dL~~~~~~ 702 (938)
. +++++||. |++
T Consensus 103 -----------------------------------------------------------------~-~~~~~dL~--g~~ 114 (229)
T 2y7i_A 103 -----------------------------------------------------------------A-YHTFADLK--GKK 114 (229)
T ss_dssp -----------------------------------------------------------------S-CCSTGGGT--TCE
T ss_pred -----------------------------------------------------------------C-CCCHHHHC--CCE
Confidence 2 67899997 889
Q ss_pred eeEEeCchHHHHHHHhcccccccccccCCHHHHHHHHhcCCCCCceEEEEecchhHHHHHhcCCcEEEeCcccc-----c
Q 002309 703 IGYQEGSFAEYYLSQELNISKSRLVALRTPEDYAKALKDGPGKGGVAAVVDERPYVELFLSSQCSFRIVGQEFT-----K 777 (938)
Q Consensus 703 i~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~a~i~~~~~~~~~~~~~~~l~~~~~~~~-----~ 777 (938)
||+..|+....++.+.. +..+++.+.+.++++++|.+ |++|+++.+...+.+++++..++.+++..+. .
T Consensus 115 v~~~~g~~~~~~l~~~~--~~~~~~~~~~~~~~~~~l~~----grvDa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (229)
T 2y7i_A 115 VGLENGTTHQRYLQDKQ--QAITPVAYDSYLNAFTDLKN----NRLEGVFGDVAAIGKWLKNNPDYAIMDERASDPDYYG 188 (229)
T ss_dssp EEEETTSHHHHHHHHHC--TTSEEEEESCHHHHHHHHHT----TSCSEEEEEHHHHHHHHTTCTTEEECSCCBCCTTTSC
T ss_pred EEEecCCcHHHHHHHhC--CCCeEEecCCHHHHHHHHHc----CCcCEEEechHHHHHHHHhCCCeEEeccccccccccc
Confidence 99999998888885433 33466778899999999999 9999999999999998888778888876543 2
Q ss_pred cceEeeecCCCc-chhhHHHHHHhhhccCcHHHHHHhhcC
Q 002309 778 SGWGFAFPRDSP-LAVDLSSAILELAENGDLQRIHDKWLM 816 (938)
Q Consensus 778 ~~~~~~~~k~sp-l~~~i~~~il~l~e~G~~~~l~~~w~~ 816 (938)
.+++++++|++| ++..||++|.++.++|.+++|.+||+.
T Consensus 189 ~~~~~~~~~~~~~l~~~l~~~l~~l~~~g~~~~i~~k~~~ 228 (229)
T 2y7i_A 189 KGLGIAVRKDNDALLQEINAALDKVKASPEYAQMQEKWFT 228 (229)
T ss_dssp CCBCCEECTTCHHHHHHHHHHHHHHHTSHHHHHHHHHHHC
T ss_pred cceEEEEeCCCHHHHHHHHHHHHHHHhCChHHHHHHHHcC
Confidence 478999999988 999999999999999999999999985
No 63
>2iee_A ORF2, probable ABC transporter extracellular-binding protein YCKB; SR574, NESG, X-RAY, structural genomics, PSI-2; 2.20A {Bacillus subtilis}
Probab=99.81 E-value=3.8e-20 Score=196.25 Aligned_cols=219 Identities=16% Similarity=0.254 Sum_probs=182.4
Q ss_pred CCceeEEEecccccccceeeeccCC--cceEeeeHHHHHHHHHhCCCCccEEEEecCCCCCCCChhHHHHhhhcceecEE
Q 002309 463 NGKLLKIGVPNRASYREFVSKVRGS--DMFQGFCIDVFTAAVNLLPYAVPYQFVAFGDGHKNPSYTQLVDSITTGVFDAV 540 (938)
Q Consensus 463 ~g~~lrv~~~~~~~~~~~~~~~~~~--~~~~G~~~dll~~la~~l~f~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~D~~ 540 (938)
..++|||++.. .|+||.+.+.++ +.+.|+++|+++++++++|+++++ +. .+|..++.+|.+|++|++
T Consensus 19 ~~~~l~v~~~~--~~pP~~~~~~~~~~g~~~G~~~dl~~~i~~~~g~~v~~--~~-------~~~~~~~~~l~~G~~D~~ 87 (271)
T 2iee_A 19 DKGKIVVATSG--TLYPTSYHDTDSGSDKLTGYEVEVVREAAKRLGLKVEF--KE-------MGIDGMLTAVNSGQVDAA 87 (271)
T ss_dssp HHTEEEEEECS--CBTTTBEEETTTTCCEEECHHHHHHHHHHHHTTCEEEE--EE-------CCSTTHHHHHHHTSSSEE
T ss_pred cCCeEEEEECC--CCCCeeEeCCCCCCCCceeeHHHHHHHHHHHcCCeEEE--EE-------CCHHHHHHHHHCCCcCEE
Confidence 45689999974 788998875422 889999999999999999977544 44 249999999999999999
Q ss_pred eccEeeecCceeeeeeccceecccEEEEEeccCCCCCcceeeccCchhhHHHHHHHHHHHHhhhheeecccCCCCCCCcc
Q 002309 541 VGDITIVTNRTKIVDFSQPYAASGLVVVVPFRKLNTGAWAFLRPFSPLMWTVTACFFVVVGIVVWILEHRINDEFRGPPK 620 (938)
Q Consensus 541 ~~~~~~t~~r~~~v~fs~p~~~~~~~~lv~~~~~~~~~~~~l~PF~~~vW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 620 (938)
+++++.+++|.+.++||.||+..+.++++++...
T Consensus 88 ~~~~~~t~~r~~~~~fs~p~~~~~~~l~~~~~~~---------------------------------------------- 121 (271)
T 2iee_A 88 ANDIDVTKDREEKFAFSTPYKYSYGTAIVRKDDL---------------------------------------------- 121 (271)
T ss_dssp CSSCBCCHHHHTTEEECCCSEEEEEEEEECTTTG----------------------------------------------
T ss_pred EeCCcCChhhccceEEeecceeCCeEEEEECCCC----------------------------------------------
Confidence 9888899999999999999999999999886540
Q ss_pred ccchhhhhHHHHHHHhhhhhhhhhhcccCccccchhHHHHHHHHHHHHHHhhhhhhhhhhhhcccccCCCCChHHhhhCC
Q 002309 621 RQVITILWFSLSTLFFAHIAIFVILAEENTVSTLGRLVLIIWLFVVLIINSSYTASLTSILTVQQLYSPINGIESLRKSD 700 (938)
Q Consensus 621 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~p~s~s~R~~~~~w~~~~lil~s~Yta~L~s~Lt~~~~~~~i~s~~dL~~~~ 700 (938)
..|++++||. |
T Consensus 122 -------------------------------------------------------------------~~i~~~~dL~--g 132 (271)
T 2iee_A 122 -------------------------------------------------------------------SGIKTLKDLK--G 132 (271)
T ss_dssp -------------------------------------------------------------------GGCSSGGGGT--T
T ss_pred -------------------------------------------------------------------CCCCCHHHhC--C
Confidence 2678999997 8
Q ss_pred CCeeEEeCchHHHHHHHhcccccccccccCCHHHH--HHHHhcCCCCCceEEEEecchhHHHHHh-cC--CcEEEe-Ccc
Q 002309 701 DPIGYQEGSFAEYYLSQELNISKSRLVALRTPEDY--AKALKDGPGKGGVAAVVDERPYVELFLS-SQ--CSFRIV-GQE 774 (938)
Q Consensus 701 ~~i~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~l~~~~~~g~~~a~i~~~~~~~~~~~-~~--~~l~~~-~~~ 774 (938)
++||+..|+....++++ .+. +++.+.+..+. +++|.+ |++| ++.+...+.+++. +. .++.++ +..
T Consensus 133 ~~i~v~~g~~~~~~l~~-~~~---~~~~~~~~~~~~l~~~L~~----GrvD-~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 203 (271)
T 2iee_A 133 KKAAGAATTVYMEVARK-YGA---KEVIYDNATNEQYLKDVAN----GRTD-VILNDYYLQTLALAAFPDLNITIHPDIK 203 (271)
T ss_dssp CEEESCTTSHHHHHHHH-TTC---EEEECSSCCHHHHHHHHHH----TSSC-EEEEEHHHHHHHHHHCTTSSCEECSSCC
T ss_pred CEEEEeCCccHHHHHHH-cCC---ceEEeCChhhHHHHHHHHc----CCcc-EEeccHHHHHHHHHhCCCCceEEecCCC
Confidence 99999999988888843 332 66778888888 999999 8999 6666665555444 43 367777 667
Q ss_pred ccccceEeeecCCCc-chhhHHHHHHhhhccCcHHHHHHhhcC
Q 002309 775 FTKSGWGFAFPRDSP-LAVDLSSAILELAENGDLQRIHDKWLM 816 (938)
Q Consensus 775 ~~~~~~~~~~~k~sp-l~~~i~~~il~l~e~G~~~~l~~~w~~ 816 (938)
+...+++++++|++| ++..||++|.++.++|.+++|.+||+.
T Consensus 204 ~~~~~~~~~~~k~~~~l~~~ln~al~~l~~~G~~~~i~~k~~~ 246 (271)
T 2iee_A 204 YMPNKQALVMKKSNAALQKKMNEALKEMSKDGSLTKLSKQFFN 246 (271)
T ss_dssp EEEEEECCEEETTCHHHHHHHHHHHHHHHHHTHHHHHHHHHTT
T ss_pred cccceEEEEEcCCCHHHHHHHHHHHHHHHHCCCHHHHHHHhCC
Confidence 777889999999988 999999999999999999999999998
No 64
>2pyy_A Ionotropic glutamate receptor bacterial homologue; GLUR0 ligand binding domain, transport protein; HET: GLU; 2.10A {Nostoc punctiforme}
Probab=99.80 E-value=2.5e-19 Score=184.31 Aligned_cols=218 Identities=25% Similarity=0.392 Sum_probs=181.7
Q ss_pred ceeEEEecccccccceeeeccCCcceEeeeHHHHHHHHHhCCCCccEEEEecCCCCCCCChhHHHHhhhcceecEEeccE
Q 002309 465 KLLKIGVPNRASYREFVSKVRGSDMFQGFCIDVFTAAVNLLPYAVPYQFVAFGDGHKNPSYTQLVDSITTGVFDAVVGDI 544 (938)
Q Consensus 465 ~~lrv~~~~~~~~~~~~~~~~~~~~~~G~~~dll~~la~~l~f~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~D~~~~~~ 544 (938)
++|+|++. +++||.+. . ++++.|+++|+++.+++++|+++++... .+|..++.+|.+|++|++++++
T Consensus 3 ~~l~v~~~---~~~P~~~~-~-~g~~~G~~~dl~~~~~~~~g~~~~~~~~--------~~~~~~~~~l~~g~~D~~~~~~ 69 (228)
T 2pyy_A 3 QPLLVATR---VIPPFVLS-N-KGELSGFSIDLWRSIATQIGIESKLIEY--------SSVPELISAIKDNKVNLGIAAI 69 (228)
T ss_dssp -CEEEEEC---CBTTTBBC-C----CBSHHHHHHHHHHHHHTCCEEEEEC--------SSHHHHHHHHHTTSCSEECSSC
T ss_pred ceEEEEec---CCCCeEEe-c-CCceEEEeHHHHHHHHHHhCCcEEEEEc--------CCHHHHHHHHHCCCcCEEEecc
Confidence 57999997 36788776 3 6789999999999999999977544443 3599999999999999998888
Q ss_pred eeecCceeeeeeccceecccEEEEEeccCCCCCcceeeccCchhhHHHHHHHHHHHHhhhheeecccCCCCCCCccccch
Q 002309 545 TIVTNRTKIVDFSQPYAASGLVVVVPFRKLNTGAWAFLRPFSPLMWTVTACFFVVVGIVVWILEHRINDEFRGPPKRQVI 624 (938)
Q Consensus 545 ~~t~~r~~~v~fs~p~~~~~~~~lv~~~~~~~~~~~~l~PF~~~vW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 624 (938)
+.+++|.+.+.|+.||...+.++++++..+.
T Consensus 70 ~~~~~r~~~~~~~~p~~~~~~~~~~~~~~~~------------------------------------------------- 100 (228)
T 2pyy_A 70 SITAEREQNFDFSLPIFASGLQIMVRNLESG------------------------------------------------- 100 (228)
T ss_dssp BCCHHHHHHSEECSCSEEEEEEEEEEC-----------------------------------------------------
T ss_pred ccCHHHHccceecccchhcceEEEEECCccc-------------------------------------------------
Confidence 8899999999999999999999999876510
Q ss_pred hhhhHHHHHHHhhhhhhhhhhcccCccccchhHHHHHHHHHHHHHHhhhhhhhhhhhhcccccCCCCChHHhhhCCCCee
Q 002309 625 TILWFSLSTLFFAHIAIFVILAEENTVSTLGRLVLIIWLFVVLIINSSYTASLTSILTVQQLYSPINGIESLRKSDDPIG 704 (938)
Q Consensus 625 ~~~~~~~~~l~~~~~~~~~~~~~~~p~s~s~R~~~~~w~~~~lil~s~Yta~L~s~Lt~~~~~~~i~s~~dL~~~~~~i~ 704 (938)
...+++++||. +++|+
T Consensus 101 --------------------------------------------------------------~~~~~~~~dL~--g~~i~ 116 (228)
T 2pyy_A 101 --------------------------------------------------------------TGDIRSIDDLP--GKVVA 116 (228)
T ss_dssp ---------------------------------------------------------------CCCCSGGGCT--TCEEE
T ss_pred --------------------------------------------------------------cCCcCCHHHcC--CCeEE
Confidence 14688999997 88999
Q ss_pred EEeCchHHHHHHHhcccccccccccCCHHHHHHHHhcCCCCCceEEEEecchhHHHHHhcCC--cEEEeCccccccceEe
Q 002309 705 YQEGSFAEYYLSQELNISKSRLVALRTPEDYAKALKDGPGKGGVAAVVDERPYVELFLSSQC--SFRIVGQEFTKSGWGF 782 (938)
Q Consensus 705 ~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~a~i~~~~~~~~~~~~~~--~l~~~~~~~~~~~~~~ 782 (938)
+..|+....++.+ .+ .+++.+.+..+.+++|.+ |++|+++.+...+.+...+.. ++.+++..+...++++
T Consensus 117 ~~~g~~~~~~l~~-~~---~~~~~~~~~~~~~~~l~~----g~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (228)
T 2pyy_A 117 TTAGSTAATYLRE-HH---ISVLEVPKIEEAYKALQT----KKADAVVFDAPVLLFYAANEGKGKVEIVGSILREESYGI 188 (228)
T ss_dssp EETTSHHHHHHHH-TT---CEEEEESSHHHHHHHHHT----TSSSEEEEEHHHHHHHHHTTTTTTEEEEEEEEEEEEECC
T ss_pred EEcCcHHHHHHHH-cC---CceEecCCHHHHHHHHHc----CCCCEEEecHHHHHHHHHhCCCCcEEEecccccceeEEE
Confidence 9999988888854 32 356678899999999999 899999999998888877754 6887776677778999
Q ss_pred eecCCCcchhhHHHHHHhhhccCcHHHHHHhhcC
Q 002309 783 AFPRDSPLAVDLSSAILELAENGDLQRIHDKWLM 816 (938)
Q Consensus 783 ~~~k~spl~~~i~~~il~l~e~G~~~~l~~~w~~ 816 (938)
+++|++++...+|++|.++.++|.+++|.++|+.
T Consensus 189 ~~~~~~~l~~~~~~~l~~l~~~g~~~~i~~k~~~ 222 (228)
T 2pyy_A 189 ILPNNSPYRKPINQALLNLKENGTYQSLYDKWFD 222 (228)
T ss_dssp EECTTCTTHHHHHHHHHHHHHTTHHHHHHHHHHC
T ss_pred EEeCChHHHHHHHHHHHHHHhCCcHHHHHHHHcC
Confidence 9999999999999999999999999999999997
No 65
>2q88_A EHUB, putative ABC transporter amino acid-binding prote; substrate-binding protein, compatible solues, ABC-transporte osmoprotection; HET: 4CS; 1.90A {Sinorhizobium meliloti} PDB: 2q89_A*
Probab=99.80 E-value=3.5e-19 Score=187.19 Aligned_cols=221 Identities=17% Similarity=0.228 Sum_probs=184.2
Q ss_pred CceeEEEecccccccceeeeccCCcceEeeeHHHHHHHHHhCCCC-ccEEEEecCCCCCCCChhHHHHhhhcceecEEec
Q 002309 464 GKLLKIGVPNRASYREFVSKVRGSDMFQGFCIDVFTAAVNLLPYA-VPYQFVAFGDGHKNPSYTQLVDSITTGVFDAVVG 542 (938)
Q Consensus 464 g~~lrv~~~~~~~~~~~~~~~~~~~~~~G~~~dll~~la~~l~f~-~~~~~~~~~~~~~~~~~~~~i~~l~~g~~D~~~~ 542 (938)
.++|||++. .|+||.+.+. ++.+.|+++|+++.+++++|++ +++.. ..|..++.+|.+|++|++++
T Consensus 12 ~~~l~v~~~---~~~P~~~~~~-~g~~~G~~~dl~~~i~~~~g~~~~~~~~---------~~~~~~~~~l~~g~~D~~~~ 78 (257)
T 2q88_A 12 QGFARIAIA---NEPPFTAVGA-DGKVSGAAPDVAREIFKRLGVADVVASI---------SEYGAMIPGLQAGRHDAITA 78 (257)
T ss_dssp HTEEEEEEC---CCTTTCEECT-TCCEESHHHHHHHHHHHHTTCCEEEEEE---------CCGGGHHHHHHTTSCSEECS
T ss_pred CCeEEEEcC---CCCCeeEECC-CCCcccccHHHHHHHHHHcCCCeeeEEe---------CCHHHHHHHHHCCCcCEEEe
Confidence 467999996 5788887654 6889999999999999999976 55444 34999999999999999987
Q ss_pred cEeeecCceeeeeeccceecccEEEEEeccCCCCCcceeeccCchhhHHHHHHHHHHHHhhhheeecccCCCCCCCcccc
Q 002309 543 DITIVTNRTKIVDFSQPYAASGLVVVVPFRKLNTGAWAFLRPFSPLMWTVTACFFVVVGIVVWILEHRINDEFRGPPKRQ 622 (938)
Q Consensus 543 ~~~~t~~r~~~v~fs~p~~~~~~~~lv~~~~~~~~~~~~l~PF~~~vW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 622 (938)
+++.+++|.+.++||.||+..+..+++++...
T Consensus 79 ~~~~t~~r~~~~~~s~p~~~~~~~~~~~~~~~------------------------------------------------ 110 (257)
T 2q88_A 79 GLFMKPERCAAVAYSQPILCDAEAFALKKGNP------------------------------------------------ 110 (257)
T ss_dssp CCBCCHHHHTTSEECSCCCEECEEEEEETTCT------------------------------------------------
T ss_pred cccCCHHHHhccccccchhcCceEEEEECCCc------------------------------------------------
Confidence 88999999999999999999999999987650
Q ss_pred chhhhhHHHHHHHhhhhhhhhhhcccCccccchhHHHHHHHHHHHHHHhhhhhhhhhhhhcccccCCCCChHHhhhC-CC
Q 002309 623 VITILWFSLSTLFFAHIAIFVILAEENTVSTLGRLVLIIWLFVVLIINSSYTASLTSILTVQQLYSPINGIESLRKS-DD 701 (938)
Q Consensus 623 ~~~~~~~~~~~l~~~~~~~~~~~~~~~p~s~s~R~~~~~w~~~~lil~s~Yta~L~s~Lt~~~~~~~i~s~~dL~~~-~~ 701 (938)
..|++++||..+ ++
T Consensus 111 -----------------------------------------------------------------~~i~~~~dL~~~~g~ 125 (257)
T 2q88_A 111 -----------------------------------------------------------------LGLKSYKDIADNPDA 125 (257)
T ss_dssp -----------------------------------------------------------------TCCCBHHHHHHCTTC
T ss_pred -----------------------------------------------------------------cCCCCHHHHhccCCc
Confidence 258899999865 78
Q ss_pred CeeEEeCchHHHHHHHhcccccccccccCCHHHHHHHHhcCCCCCceEEEEecchhHHHHHhcCC--cEEEeCcccc--c
Q 002309 702 PIGYQEGSFAEYYLSQELNISKSRLVALRTPEDYAKALKDGPGKGGVAAVVDERPYVELFLSSQC--SFRIVGQEFT--K 777 (938)
Q Consensus 702 ~i~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~a~i~~~~~~~~~~~~~~--~l~~~~~~~~--~ 777 (938)
+||+..|+....++. ..+.+..+++.+.+.++++++|.+ |++|+++.+...+.+++++.. .+..+..... .
T Consensus 126 ~i~~~~g~~~~~~l~-~~~~~~~~~~~~~~~~~~~~~l~~----grvDa~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 200 (257)
T 2q88_A 126 KIGAPGGGTEEKLAL-EAGVPRDRVIVVPDGQSGLKMLQD----GRIDVYSLPVLSINDLVSKANDPNVEVLAPVEGAPV 200 (257)
T ss_dssp CEEECTTSHHHHHHH-HTTCCGGGEEECSSHHHHHHHHHH----TSCSEEEEEHHHHHHHHHHHCCTTEEEECSCBTCCC
T ss_pred eEEEECCcccHHHHH-hcCCCCceEEEcCCHHHHHHHHHc----CCCcEEEcCHHHHHHHHHhCCCcceeeecccCCccc
Confidence 899999998888884 344455577788999999999999 999999999999888877644 4555543211 3
Q ss_pred cceEeeecCCCc-chhhHHHHHHhhhccCcHHHHHHhhc
Q 002309 778 SGWGFAFPRDSP-LAVDLSSAILELAENGDLQRIHDKWL 815 (938)
Q Consensus 778 ~~~~~~~~k~sp-l~~~i~~~il~l~e~G~~~~l~~~w~ 815 (938)
.+++++++|+++ +...||++|.++.++|.+++|.++|.
T Consensus 201 ~~~~~~~~k~~~~l~~~l~~~l~~~~~~g~~~~i~~k~~ 239 (257)
T 2q88_A 201 YCDGAAFRKGDEALRDAFDVELAKLKESGEFAKIIEPYG 239 (257)
T ss_dssp EEBCCEECGGGHHHHHHHHHHHHHHHHHTHHHHHHGGGT
T ss_pred cceEEEEcCCCHHHHHHHHHHHHHHHhCCcHHHHHHHhC
Confidence 467889999876 99999999999999999999999993
No 66
>3qax_A Probable ABC transporter arginine-binding protein; periplasmic, transport PR; HET: ARG; 2.00A {Chlamydophila pneumoniae} PDB: 3g41_A* 3n26_A*
Probab=99.80 E-value=7.9e-19 Score=185.61 Aligned_cols=217 Identities=18% Similarity=0.271 Sum_probs=190.3
Q ss_pred CceeEEEecccccccceeeeccCCcceEeeeHHHHHHHHHhCCCCccEEEEecCCCCCCCChhHHHHhhhcceecEEecc
Q 002309 464 GKLLKIGVPNRASYREFVSKVRGSDMFQGFCIDVFTAAVNLLPYAVPYQFVAFGDGHKNPSYTQLVDSITTGVFDAVVGD 543 (938)
Q Consensus 464 g~~lrv~~~~~~~~~~~~~~~~~~~~~~G~~~dll~~la~~l~f~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~D~~~~~ 543 (938)
.++++|++.. .++||.+.+. ++++.|+++|+++.+++++|++ ++++. .+|..++.++.+|++|+++++
T Consensus 30 ~~~l~v~~~~--~~~P~~~~~~-~g~~~G~~~dl~~~i~~~~g~~--~~~~~-------~~~~~~~~~l~~g~~D~~~~~ 97 (268)
T 3qax_A 30 NRIWIVGTNA--TYPPFEYVDA-QGEVVGFDIDLAKAISEKLGKQ--LEVRE-------FAFDALILNLKKHRIDAILAG 97 (268)
T ss_dssp -CEEEEEECS--CBTTTBEECT-TSCEESHHHHHHHHHHHHHTCE--EEEEE-------CCGGGHHHHHHHTSSSEECSC
T ss_pred CCeEEEEECC--CCCCceEECC-CCCEEEEEHHHHHHHHHHhCCe--EEEEe-------cCHHHHHHHHhCCCccEEeec
Confidence 4689999875 6788888755 7889999999999999999976 44544 359999999999999999888
Q ss_pred EeeecCceeeeeecccee--cccEEEEEeccCCCCCcceeeccCchhhHHHHHHHHHHHHhhhheeecccCCCCCCCccc
Q 002309 544 ITIVTNRTKIVDFSQPYA--ASGLVVVVPFRKLNTGAWAFLRPFSPLMWTVTACFFVVVGIVVWILEHRINDEFRGPPKR 621 (938)
Q Consensus 544 ~~~t~~r~~~v~fs~p~~--~~~~~~lv~~~~~~~~~~~~l~PF~~~vW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 621 (938)
++.+++|.+.++| .||+ ..+..+++++..
T Consensus 98 ~~~~~~r~~~~~~-~p~~~~~~~~~~~~~~~~------------------------------------------------ 128 (268)
T 3qax_A 98 MSITPSRQKEIAL-LPYYGDEVQELMVVSKRS------------------------------------------------ 128 (268)
T ss_dssp CBCCHHHHTTSEE-EEEECCCBCEEEEEEETT------------------------------------------------
T ss_pred CccCHhHhcceee-ecceecccceEEEEECCC------------------------------------------------
Confidence 9999999999999 9999 888999998765
Q ss_pred cchhhhhHHHHHHHhhhhhhhhhhcccCccccchhHHHHHHHHHHHHHHhhhhhhhhhhhhcccccCCCCChHHhhhCCC
Q 002309 622 QVITILWFSLSTLFFAHIAIFVILAEENTVSTLGRLVLIIWLFVVLIINSSYTASLTSILTVQQLYSPINGIESLRKSDD 701 (938)
Q Consensus 622 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~p~s~s~R~~~~~w~~~~lil~s~Yta~L~s~Lt~~~~~~~i~s~~dL~~~~~ 701 (938)
.+|++++||. |+
T Consensus 129 ------------------------------------------------------------------~~i~~~~dL~--g~ 140 (268)
T 3qax_A 129 ------------------------------------------------------------------LETPVLPLTQ--YS 140 (268)
T ss_dssp ------------------------------------------------------------------SCSCCCCGGG--SS
T ss_pred ------------------------------------------------------------------CCCCCHHHhC--CC
Confidence 4788999998 88
Q ss_pred CeeEEeCchHHHHHHHhcccccccccccCCHHHHHHHHhcCCCCCceEEEEecchhHHHHHhcCCcEEEeCccccccc--
Q 002309 702 PIGYQEGSFAEYYLSQELNISKSRLVALRTPEDYAKALKDGPGKGGVAAVVDERPYVELFLSSQCSFRIVGQEFTKSG-- 779 (938)
Q Consensus 702 ~i~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~a~i~~~~~~~~~~~~~~~l~~~~~~~~~~~-- 779 (938)
+|++..|+....++.+ .+..+++.+.+.++.+++|.+ |++|+++.+...+.++..+..++.+++..+...+
T Consensus 141 ~i~~~~g~~~~~~l~~---~~~~~~~~~~~~~~~~~~l~~----G~vDa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 213 (268)
T 3qax_A 141 SVAVQTGTYQEHYLLS---QPGICVRSFDSTLEVIMEVRY----GKSPVAVLEPSVGRVVLKDFPNLVATRLELPPECWV 213 (268)
T ss_dssp CEEEETTSHHHHHHHT---STTCCEEEESCHHHHHHHHHT----TSSSEEEECHHHHHHHGGGCTTEEEEEEECCGGGCB
T ss_pred EEEEecCcHHHHHHHh---CCCceEEecCCHHHHHHHHHc----CCCCEEEecHHHHHHHHHhCCCcEEecCccCccccc
Confidence 9999999988888854 334567778899999999999 9999999999999999888887888877777777
Q ss_pred --eEeeecCCCc-chhhHHHHHHhhhccCcHHHHHHhhcC
Q 002309 780 --WGFAFPRDSP-LAVDLSSAILELAENGDLQRIHDKWLM 816 (938)
Q Consensus 780 --~~~~~~k~sp-l~~~i~~~il~l~e~G~~~~l~~~w~~ 816 (938)
++++++|++| +++.+|++|.++.++|.+++|.++|+.
T Consensus 214 ~~~~~~~~k~~~~l~~~l~~~l~~l~~~g~~~~i~~k~~~ 253 (268)
T 3qax_A 214 LGCGLGVAKDRPEEIQTIQQAITDLKSEGVIQSLTKKWQL 253 (268)
T ss_dssp CCEEEEECTTCHHHHHHHHHHHHHHHHTTHHHHHHHHTTC
T ss_pred ccEEEEEeCCCHHHHHHHHHHHHHHHHCCcHHHHHHHHcC
Confidence 9999999988 999999999999999999999999997
No 67
>2pvu_A ARTJ; basic amino acid binding protein, ABC transport system, THER bacterium, transport protein; HET: LYS; 1.79A {Geobacillus stearothermophilus} PDB: 2q2a_A* 2q2c_A*
Probab=99.79 E-value=1.2e-18 Score=184.82 Aligned_cols=219 Identities=20% Similarity=0.350 Sum_probs=187.6
Q ss_pred CCceeEEEecccccccceeeeccCCcceEeeeHHHHHHHHHhCCCCccEEEEecCCCCCCCChhHHHHhhhcceecEEec
Q 002309 463 NGKLLKIGVPNRASYREFVSKVRGSDMFQGFCIDVFTAAVNLLPYAVPYQFVAFGDGHKNPSYTQLVDSITTGVFDAVVG 542 (938)
Q Consensus 463 ~g~~lrv~~~~~~~~~~~~~~~~~~~~~~G~~~dll~~la~~l~f~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~D~~~~ 542 (938)
..++|||++.. .|+||.+.+ ++.+.|+++|+++.+++++|++++ ++. ..|..++.+|.+|++|++++
T Consensus 40 ~~~~l~v~~~~--~~~P~~~~~--~g~~~G~~~dl~~~i~~~~g~~v~--~~~-------~~~~~~~~~l~~G~~D~~~~ 106 (272)
T 2pvu_A 40 TKKKVVVGTDA--AFAPFEYMQ--KGKIVGFDVDLLDAVMKAAGLDYE--LKN-------IGWDPLFASLQSKEVDMGIS 106 (272)
T ss_dssp CCCCEEEEECC--CBTTTBEEE--TTEEESHHHHHHHHHHHHHTCCEE--EEE-------CCHHHHHHHHHHTSSSEECS
T ss_pred cCCeEEEEECC--CCCCeEEec--CCeEEEEHHHHHHHHHHHhCCceE--EEE-------CCHHHHHHHHhCCCCCEEEe
Confidence 45689999974 688888774 578999999999999999997754 444 23999999999999999988
Q ss_pred cEeeecCceeeeeeccceecccEEEEEeccCCCCCcceeeccCchhhHHHHHHHHHHHHhhhheeecccCCCCCCCcccc
Q 002309 543 DITIVTNRTKIVDFSQPYAASGLVVVVPFRKLNTGAWAFLRPFSPLMWTVTACFFVVVGIVVWILEHRINDEFRGPPKRQ 622 (938)
Q Consensus 543 ~~~~t~~r~~~v~fs~p~~~~~~~~lv~~~~~~~~~~~~l~PF~~~vW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 622 (938)
++..+++|.+.+.|+.||......+++++..
T Consensus 107 ~~~~~~~r~~~~~~s~p~~~~~~~l~~~~~~------------------------------------------------- 137 (272)
T 2pvu_A 107 GITITDERKQSYDFSDPYFEATQVILVKQGS------------------------------------------------- 137 (272)
T ss_dssp SCBCCHHHHTTEEECSCCEEECEEEEEETTC-------------------------------------------------
T ss_pred CCcCCHHHHhcCccchhhhccceEEEEECCC-------------------------------------------------
Confidence 8888999999999999999999999988654
Q ss_pred chhhhhHHHHHHHhhhhhhhhhhcccCccccchhHHHHHHHHHHHHHHhhhhhhhhhhhhcccccCCCCChHHhhhCCCC
Q 002309 623 VITILWFSLSTLFFAHIAIFVILAEENTVSTLGRLVLIIWLFVVLIINSSYTASLTSILTVQQLYSPINGIESLRKSDDP 702 (938)
Q Consensus 623 ~~~~~~~~~~~l~~~~~~~~~~~~~~~p~s~s~R~~~~~w~~~~lil~s~Yta~L~s~Lt~~~~~~~i~s~~dL~~~~~~ 702 (938)
+|++++||. +++
T Consensus 138 ------------------------------------------------------------------~i~~~~dL~--g~~ 149 (272)
T 2pvu_A 138 ------------------------------------------------------------------PVKNALDLK--GKT 149 (272)
T ss_dssp ------------------------------------------------------------------CCCSGGGGT--TSC
T ss_pred ------------------------------------------------------------------CCCCHHHhC--CCe
Confidence 478999997 889
Q ss_pred eeEEeCchHHHHHHHhcccccccccccCCHHHHHHHHhcCCCCCceEEEEecchhHHHHHhcCC--cEEEeCccc--ccc
Q 002309 703 IGYQEGSFAEYYLSQELNISKSRLVALRTPEDYAKALKDGPGKGGVAAVVDERPYVELFLSSQC--SFRIVGQEF--TKS 778 (938)
Q Consensus 703 i~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~a~i~~~~~~~~~~~~~~--~l~~~~~~~--~~~ 778 (938)
|++..|+....++.+..+ ...+++.+.+..+.+++|.+ |++|+++.+...+.++.++.. ++.+++... ...
T Consensus 150 i~~~~g~~~~~~l~~~~~-~~~~i~~~~~~~~~~~~l~~----G~vDa~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 224 (272)
T 2pvu_A 150 IGVQNATTGQEAAEKLFG-KGPHIKKFETTVVAIMELLN----GGVDAVITDNAVANEYVKNNPNKKLQVIEDPKNFASE 224 (272)
T ss_dssp EEEETTSHHHHHHHHHHC-SSTTEEEESSHHHHHHHHHT----TSCSEEEEEHHHHHHHHHHCGGGCEEEECCTTTSCCE
T ss_pred EEEEcCchHHHHHHHhcC-CCCeEEEcCCHHHHHHHHHc----CCccEEEeCHHHHHHHHHhCCCCceEEeccccccCCc
Confidence 999999988888865544 34566778899999999999 899999999999888877765 388887653 667
Q ss_pred ceEeeecCCCcchhhHHHHHHhhhccCcHHHHHHhhcC
Q 002309 779 GWGFAFPRDSPLAVDLSSAILELAENGDLQRIHDKWLM 816 (938)
Q Consensus 779 ~~~~~~~k~spl~~~i~~~il~l~e~G~~~~l~~~w~~ 816 (938)
+++++++|+..+...||++|.++.++|.+++|.++|+.
T Consensus 225 ~~~~~~~k~~~l~~~l~~~l~~l~~~g~~~~i~~k~~~ 262 (272)
T 2pvu_A 225 YYGMIFPKNSELKAKVDEALKNVINSGKYTEIYKKWFG 262 (272)
T ss_dssp EECCEEETTCTTHHHHHHHHHHHHHTTHHHHHHHHHHS
T ss_pred eEEEEEeCCHHHHHHHHHHHHHHHhCChHHHHHHHHcC
Confidence 88999999944999999999999999999999999997
No 68
>4i62_A Amino acid ABC transporter, periplasmic amino ACI protein, putative; center for structural genomics of infectious diseases (csgid national institute of allergy and infectious diseases (NIAI niaid; HET: ARG; 1.05A {Streptococcus pneumoniae}
Probab=99.79 E-value=6.9e-19 Score=186.19 Aligned_cols=220 Identities=23% Similarity=0.365 Sum_probs=189.0
Q ss_pred CceeEEEecccccccceee---eccCCcceEeeeHHHHHHHHHhCCCCccEEEEecCCCCCCCChhHHHHhhhcceecEE
Q 002309 464 GKLLKIGVPNRASYREFVS---KVRGSDMFQGFCIDVFTAAVNLLPYAVPYQFVAFGDGHKNPSYTQLVDSITTGVFDAV 540 (938)
Q Consensus 464 g~~lrv~~~~~~~~~~~~~---~~~~~~~~~G~~~dll~~la~~l~f~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~D~~ 540 (938)
.++++|++.. .|+||.+ .+ +++.+.|+++|+++.+++++|++ ++++. .+|..++.++.+|++|++
T Consensus 38 ~~~l~v~~~~--~~~P~~~~~~~~-~~g~~~G~~~dl~~~~~~~~g~~--~~~~~-------~~~~~~~~~l~~g~~D~~ 105 (269)
T 4i62_A 38 KGKLVVALNP--DFAPFEYQKVVD-GKNQIVGSDIELAKAIATELGVE--LELSP-------MSFDNVLASVQSGKADLA 105 (269)
T ss_dssp HTEEEEEECS--CBTTTBEEEEET-TEEEEESHHHHHHHHHHHHHTCE--EEEEE-------CCHHHHHHHHHTTSCSEE
T ss_pred CCeEEEEecC--CCCCceeecccC-CCCcEeeecHHHHHHHHHHHCCc--eEEEE-------cCHHHHHHHHhCCCccEE
Confidence 3579999974 6788887 44 37889999999999999999976 44544 359999999999999999
Q ss_pred eccEeeecCceeeeeeccceecccEEEEEeccCCCCCcceeeccCchhhHHHHHHHHHHHHhhhheeecccCCCCCCCcc
Q 002309 541 VGDITIVTNRTKIVDFSQPYAASGLVVVVPFRKLNTGAWAFLRPFSPLMWTVTACFFVVVGIVVWILEHRINDEFRGPPK 620 (938)
Q Consensus 541 ~~~~~~t~~r~~~v~fs~p~~~~~~~~lv~~~~~~~~~~~~l~PF~~~vW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 620 (938)
++++..+++|.+.+.|+.|++.....+++++..
T Consensus 106 ~~~~~~~~~r~~~~~~s~p~~~~~~~~~~~~~~----------------------------------------------- 138 (269)
T 4i62_A 106 ISGVSKTDERSKVFDFSTPYYTAKNKLIVKKSD----------------------------------------------- 138 (269)
T ss_dssp CSSCBCCHHHHTTEEECSCCEECCEEEEEEGGG-----------------------------------------------
T ss_pred ecCCcCCHhHhhceecccchhhcceEEEEECCc-----------------------------------------------
Confidence 988999999999999999999999999998764
Q ss_pred ccchhhhhHHHHHHHhhhhhhhhhhcccCccccchhHHHHHHHHHHHHHHhhhhhhhhhhhhcccccCCCCChHHhhhCC
Q 002309 621 RQVITILWFSLSTLFFAHIAIFVILAEENTVSTLGRLVLIIWLFVVLIINSSYTASLTSILTVQQLYSPINGIESLRKSD 700 (938)
Q Consensus 621 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~p~s~s~R~~~~~w~~~~lil~s~Yta~L~s~Lt~~~~~~~i~s~~dL~~~~ 700 (938)
..+|++++||. |
T Consensus 139 ------------------------------------------------------------------~~~i~~~~dL~--g 150 (269)
T 4i62_A 139 ------------------------------------------------------------------LATYQSVNDLA--Q 150 (269)
T ss_dssp ------------------------------------------------------------------TTTCSSGGGGC---
T ss_pred ------------------------------------------------------------------cccccCHHHhC--C
Confidence 14788999998 8
Q ss_pred CCeeEEeCchHHHHHHHhcccccccccccCCHHHHHHHHhcCCCCCceEEEEecchhHHHHHhcCCcEEEeCcccc---c
Q 002309 701 DPIGYQEGSFAEYYLSQELNISKSRLVALRTPEDYAKALKDGPGKGGVAAVVDERPYVELFLSSQCSFRIVGQEFT---K 777 (938)
Q Consensus 701 ~~i~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~a~i~~~~~~~~~~~~~~~l~~~~~~~~---~ 777 (938)
++||+..|+....++.+.. +..+++.+++.++.+++|.+ |++|+++.+.+.+.++..++.++.+....+. .
T Consensus 151 ~~i~~~~g~~~~~~l~~~~--~~~~~~~~~~~~~~~~~l~~----g~vDa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 224 (269)
T 4i62_A 151 KKVGAQKGSIQETMAKDLL--QNSSLVSLPKNGNLITDLKS----GQVDAVIFEEPVAKGFVENNPDLAIADLNFEKEQD 224 (269)
T ss_dssp CEEEEETTSHHHHHHHHHC--TTSEEEEESCHHHHHHHHHT----TSSSEEEEEHHHHHHHHHHCTTEEECSCCCCC-CC
T ss_pred CeEEEecCchHHHHHHHhC--CCCcEEecCCHHHHHHHHHc----CCCCEEEeChHHHHHHHHhCCCCeEEeeccCCCcc
Confidence 9999999998888885533 33567778999999999999 9999999999999988888877777655444 6
Q ss_pred cceEeeecCCCc-chhhHHHHHHhhhccCcHHHHHHhhcC
Q 002309 778 SGWGFAFPRDSP-LAVDLSSAILELAENGDLQRIHDKWLM 816 (938)
Q Consensus 778 ~~~~~~~~k~sp-l~~~i~~~il~l~e~G~~~~l~~~w~~ 816 (938)
.+++++++|++| +...||++|.++.++|.+++|.++|+.
T Consensus 225 ~~~~~~~~~~~~~l~~~l~~~l~~l~~~g~~~~i~~k~~~ 264 (269)
T 4i62_A 225 DSYAVAMKKDSKELKEAVDKTIQKLKESGELDKLIEDAFK 264 (269)
T ss_dssp CEECCEEESSCHHHHHHHHHHHHHHHHTTHHHHHHHHHHH
T ss_pred cceEEEEeCCCHHHHHHHHHHHHHHHhCChHHHHHHHHhC
Confidence 688999999998 999999999999999999999999997
No 69
>1xt8_A Putative amino-acid transporter periplasmic solut protein; ABC transport, cysteine uptake; 2.00A {Campylobacter jejuni} SCOP: c.94.1.1
Probab=99.78 E-value=1e-18 Score=187.34 Aligned_cols=218 Identities=20% Similarity=0.274 Sum_probs=188.2
Q ss_pred CceeEEEecccccccceeeeccCCcceEeeeHHHHHHHHHhC---CCCccEEEEecCCCCCCCChhHHHHhhhcceecEE
Q 002309 464 GKLLKIGVPNRASYREFVSKVRGSDMFQGFCIDVFTAAVNLL---PYAVPYQFVAFGDGHKNPSYTQLVDSITTGVFDAV 540 (938)
Q Consensus 464 g~~lrv~~~~~~~~~~~~~~~~~~~~~~G~~~dll~~la~~l---~f~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~D~~ 540 (938)
.++|+|++.. .|+||.+.+. ++.+.|+++|+++.+++++ |++++ ++. ..|..++.+|.+|++|++
T Consensus 43 ~~~l~v~~~~--~~~P~~~~~~-~g~~~G~~~dl~~~i~~~~~~~g~~~~--~~~-------~~~~~~~~~l~~G~~D~~ 110 (292)
T 1xt8_A 43 NGVVRIGVFG--DKPPFGYVDE-KGNNQGYDIALAKRIAKELFGDENKVQ--FVL-------VEAANRVEFLKSNKVDII 110 (292)
T ss_dssp HSSEEEEECS--EETTTEEECT-TSCEESHHHHHHHHHHHHHHSCTTCEE--EEE-------CCGGGHHHHHHTTSCSEE
T ss_pred CCeEEEEECC--CCCCeeEECC-CCCEeeEhHHHHHHHHHHhccCCceEE--EEE-------cCHHHHHHHHhCCCeeEE
Confidence 3579999974 6889988764 6889999999999999999 97754 444 249999999999999999
Q ss_pred eccEeeecCceeeeeeccceecccEEEEEeccCCCCCcceeeccCchhhHHHHHHHHHHHHhhhheeecccCCCCCCCcc
Q 002309 541 VGDITIVTNRTKIVDFSQPYAASGLVVVVPFRKLNTGAWAFLRPFSPLMWTVTACFFVVVGIVVWILEHRINDEFRGPPK 620 (938)
Q Consensus 541 ~~~~~~t~~r~~~v~fs~p~~~~~~~~lv~~~~~~~~~~~~l~PF~~~vW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 620 (938)
++++..+.+|.+.++|+.||...+..+++++..
T Consensus 111 ~~~~~~~~~r~~~~~~s~p~~~~~~~~~~~~~~----------------------------------------------- 143 (292)
T 1xt8_A 111 LANFTQTPQRAEQVDFCSPYMKVALGVAVPKDS----------------------------------------------- 143 (292)
T ss_dssp CSSCBCCHHHHTTEEECCCCEEEEEEEEEETTC-----------------------------------------------
T ss_pred eecCCCCcchhcceeeeccceecceEEEEECCC-----------------------------------------------
Confidence 888888999999999999999999998887543
Q ss_pred ccchhhhhHHHHHHHhhhhhhhhhhcccCccccchhHHHHHHHHHHHHHHhhhhhhhhhhhhcccccCCCCChHHhhhCC
Q 002309 621 RQVITILWFSLSTLFFAHIAIFVILAEENTVSTLGRLVLIIWLFVVLIINSSYTASLTSILTVQQLYSPINGIESLRKSD 700 (938)
Q Consensus 621 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~p~s~s~R~~~~~w~~~~lil~s~Yta~L~s~Lt~~~~~~~i~s~~dL~~~~ 700 (938)
+|++++||. |
T Consensus 144 --------------------------------------------------------------------~i~~~~dL~--g 153 (292)
T 1xt8_A 144 --------------------------------------------------------------------NITSVEDLK--D 153 (292)
T ss_dssp --------------------------------------------------------------------CCCSSGGGT--T
T ss_pred --------------------------------------------------------------------CCCCHHHhC--C
Confidence 678899998 8
Q ss_pred CCeeEEeCchHHHHHHHhcccccccccccCCHHHHHHHHhcCCCCCceEEEEecchhHHHHHhcCCcEEEeCccccccce
Q 002309 701 DPIGYQEGSFAEYYLSQELNISKSRLVALRTPEDYAKALKDGPGKGGVAAVVDERPYVELFLSSQCSFRIVGQEFTKSGW 780 (938)
Q Consensus 701 ~~i~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~a~i~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 780 (938)
++|++..|+....++.+.. +..+++.+.+.++.+++|.+ |++|+++.+...+.++..+..++.+++..+...++
T Consensus 154 ~~i~~~~g~~~~~~l~~~~--~~~~~~~~~~~~~~~~~L~~----G~vDa~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 227 (292)
T 1xt8_A 154 KTLLLNKGTTADAYFTQNY--PNIKTLKYDQNTETFAALMD----KRGDALSHDNTLLFAWVKDHPDFKMGIKELGNKDV 227 (292)
T ss_dssp SEEEEETTSHHHHHHHHHC--TTSEEEEESSHHHHHHHHHT----TSSSEEEEEHHHHHHHHHHCTTEEEEEEEEEEEEE
T ss_pred CEEEEeCCCcHHHHHHHhC--CCceEEEcCCHHHHHHHHHc----CCccEEEecHHHHHHHHHhCCCeEEcccccccCce
Confidence 8999999998888885433 23466778899999999999 99999999999999988887778887766777777
Q ss_pred -EeeecCCCc-chhhHHHHHHhhhccCcHHHHHHhhcC
Q 002309 781 -GFAFPRDSP-LAVDLSSAILELAENGDLQRIHDKWLM 816 (938)
Q Consensus 781 -~~~~~k~sp-l~~~i~~~il~l~e~G~~~~l~~~w~~ 816 (938)
+++++|++| +...+|++|.++.++|.+++|.++|+.
T Consensus 228 ~~~~~~k~~~~l~~~l~~~l~~l~~~g~~~~i~~k~~~ 265 (292)
T 1xt8_A 228 IAPAVKKGDKELKEFIDNLIIKLGQEQFFHKAYDETLK 265 (292)
T ss_dssp ECCEEETTCHHHHHHHHHHHHHHHTTTHHHHHHHHHTG
T ss_pred eEEEEeCCCHHHHHHHHHHHHHHHhCcHHHHHHHHhcC
Confidence 999999988 999999999999999999999999998
No 70
>2vha_A Periplasmic binding transport protein; periplasmic binding protein, ligand binding, ultrahigh resolution; HET: GLU; 1.00A {Shigella flexneri} PDB: 2ia4_A*
Probab=99.78 E-value=1.9e-18 Score=184.91 Aligned_cols=223 Identities=17% Similarity=0.279 Sum_probs=187.6
Q ss_pred CceeEEEecccccccceeeeccCCcceEeeeHHHHHHHHHh----CCC-CccEEEEecCCCCCCCChhHHHHhhhcceec
Q 002309 464 GKLLKIGVPNRASYREFVSKVRGSDMFQGFCIDVFTAAVNL----LPY-AVPYQFVAFGDGHKNPSYTQLVDSITTGVFD 538 (938)
Q Consensus 464 g~~lrv~~~~~~~~~~~~~~~~~~~~~~G~~~dll~~la~~----l~f-~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~D 538 (938)
.++|||++.. .|+||.+.+. ++++.|+++|+++.+++. +|. .+++++++ ..|..++.+|.+|++|
T Consensus 16 ~~~l~v~~~~--~~~P~~~~~~-~g~~~G~~~dl~~~ia~~l~~~~G~~~~~v~~~~-------~~~~~~~~~l~~g~~D 85 (287)
T 2vha_A 16 NGVIVVGHRE--SSVPFSYYDN-QQKVVGYSQDYSNAIVEAVKKKLNKPDLQVKLIP-------ITSQNRIPLLQNGTFD 85 (287)
T ss_dssp HTEEEEEECS--EETTTEEECS-SSCEESHHHHHHHHHHHHHHHHTTCTTCEEEEEE-------CCTTTHHHHHHTTSCS
T ss_pred CCeEEEEEcC--CCCCceEECC-CCCcccccHHHHHHHHHHHHHhcCCCCceEEEEE-------CCHHHHHHHHHCCCee
Confidence 4679999975 6889988765 688999999999999976 562 13355555 3489999999999999
Q ss_pred EEeccEeeecCceeeeeeccceecccEEEEEeccCCCCCcceeeccCchhhHHHHHHHHHHHHhhhheeecccCCCCCCC
Q 002309 539 AVVGDITIVTNRTKIVDFSQPYAASGLVVVVPFRKLNTGAWAFLRPFSPLMWTVTACFFVVVGIVVWILEHRINDEFRGP 618 (938)
Q Consensus 539 ~~~~~~~~t~~r~~~v~fs~p~~~~~~~~lv~~~~~~~~~~~~l~PF~~~vW~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 618 (938)
+++++++.+++|.+.++||.||+..+..+++++..
T Consensus 86 ~~~~~~~~t~~r~~~~~~s~p~~~~~~~l~~~~~~--------------------------------------------- 120 (287)
T 2vha_A 86 FECGSTTNNVERQKQAAFSDTIFVVGTRLLTKKGG--------------------------------------------- 120 (287)
T ss_dssp EECSSCBCCHHHHTTCEEEEEEEEEEEEEEEETTS---------------------------------------------
T ss_pred EEeccccCCcchhhcccccceeeecceEEEEECCC---------------------------------------------
Confidence 99888889999999999999999999999887643
Q ss_pred ccccchhhhhHHHHHHHhhhhhhhhhhcccCccccchhHHHHHHHHHHHHHHhhhhhhhhhhhhcccccCCCCChHHhhh
Q 002309 619 PKRQVITILWFSLSTLFFAHIAIFVILAEENTVSTLGRLVLIIWLFVVLIINSSYTASLTSILTVQQLYSPINGIESLRK 698 (938)
Q Consensus 619 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~p~s~s~R~~~~~w~~~~lil~s~Yta~L~s~Lt~~~~~~~i~s~~dL~~ 698 (938)
+|++++||.
T Consensus 121 ----------------------------------------------------------------------~i~sl~dL~- 129 (287)
T 2vha_A 121 ----------------------------------------------------------------------DIKDFADLK- 129 (287)
T ss_dssp ----------------------------------------------------------------------SCCSGGGGT-
T ss_pred ----------------------------------------------------------------------CCCCHHHcC-
Confidence 578999998
Q ss_pred CCCCeeEEeCchHHHHHHHhccc--ccccccccCCHHHHHHHHhcCCCCCceEEEEecchhHHHHHhcC---CcEEEeCc
Q 002309 699 SDDPIGYQEGSFAEYYLSQELNI--SKSRLVALRTPEDYAKALKDGPGKGGVAAVVDERPYVELFLSSQ---CSFRIVGQ 773 (938)
Q Consensus 699 ~~~~i~~~~~s~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~l~~~~~~g~~~a~i~~~~~~~~~~~~~---~~l~~~~~ 773 (938)
+++||+..|+....++.+.... ...+++.+.+.++.+++|.+ |++|+++.+...+.++..+. .++.+++.
T Consensus 130 -g~~v~~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~----G~vDa~i~~~~~~~~~~~~~~~~~~~~~~~~ 204 (287)
T 2vha_A 130 -GKAVVVTSGTTSEVLLNKLNEEQKMNMRIISAKDHGDSFRTLES----GRAVAFMMDDALLAGERAKAKKPDNWDIVGK 204 (287)
T ss_dssp -TCEEEEETTSHHHHHHHHHHHHTTCCCEEEEESSHHHHHHHHHT----TSCSEEEEEHHHHHHHHTTSSSGGGEEEESC
T ss_pred -CCEEEEeCCCcHHHHHHHHhhccCCCceEEEcCCHHHHHHHHHc----CCeeEEEeChHHHHHHHHhCCCCCceEecCC
Confidence 8899999999888777543211 13456778899999999999 99999999999888887764 36888887
Q ss_pred cccccceEeeecCCCc-chhhHHHHHHhhhccCcHHHHHHhhcCC
Q 002309 774 EFTKSGWGFAFPRDSP-LAVDLSSAILELAENGDLQRIHDKWLMK 817 (938)
Q Consensus 774 ~~~~~~~~~~~~k~sp-l~~~i~~~il~l~e~G~~~~l~~~w~~~ 817 (938)
.+...+++++++|++| ++..||++|.++.++|.++++.++|+..
T Consensus 205 ~~~~~~~~~~~~k~~~~l~~~l~~~l~~l~~~g~~~~i~~k~~~~ 249 (287)
T 2vha_A 205 PQSQEAYGCMLRKDDPQFKKLMDDTIAQVQTSGEAEKWFDKWFKN 249 (287)
T ss_dssp CSCEEEEEEEECTTCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHS
T ss_pred ccccCceEEEEeCCCHHHHHHHHHHHHHHHhCchHHHHHHHHcCC
Confidence 7778889999999988 9999999999999999999999999983
No 71
>2yjp_A Putative ABC transporter, periplasmic binding Pro amino acid; transport protein, solute-binding protein; 2.26A {Neisseria gonorrhoeae}
Probab=99.78 E-value=1.4e-18 Score=186.12 Aligned_cols=217 Identities=22% Similarity=0.351 Sum_probs=188.5
Q ss_pred ceeEEEecccccccceeeeccCCcceEeeeHHHHHHHHHhC---CCCccEEEEecCCCCCCCChhHHHHhhhcceecEEe
Q 002309 465 KLLKIGVPNRASYREFVSKVRGSDMFQGFCIDVFTAAVNLL---PYAVPYQFVAFGDGHKNPSYTQLVDSITTGVFDAVV 541 (938)
Q Consensus 465 ~~lrv~~~~~~~~~~~~~~~~~~~~~~G~~~dll~~la~~l---~f~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~D~~~ 541 (938)
++|||++.. .|+||.+.++ ++.+.|+.+|+++.+++++ |++ ++++. ..|..++.+|.+|++|+++
T Consensus 55 ~~l~vg~~~--~~~P~~~~~~-~g~~~G~~~dl~~~i~~~~~~~g~~--v~~~~-------~~~~~~~~~l~~G~~D~~~ 122 (291)
T 2yjp_A 55 GVIRIGVFG--DKPPFGYVDA-NGKNQGFDVEIAKDLAKDLLGSPDK--VEFVL-------TEAANRVEYVRSGKVDLIL 122 (291)
T ss_dssp TCEEEEECS--EETTTEEECT-TSCEESHHHHHHHHHHHHHHSCGGG--EEEEE-------CCGGGHHHHHHTTSCSEEC
T ss_pred CeEEEEEcC--CCCCceEECC-CCCEeehHHHHHHHHHHHhccCCce--EEEEE-------ccHHHHHHHHhCCCeeEEE
Confidence 569999974 6889988764 7889999999999999999 966 55554 2399999999999999998
Q ss_pred ccEeeecCceeeeeeccceecccEEEEEeccCCCCCcceeeccCchhhHHHHHHHHHHHHhhhheeecccCCCCCCCccc
Q 002309 542 GDITIVTNRTKIVDFSQPYAASGLVVVVPFRKLNTGAWAFLRPFSPLMWTVTACFFVVVGIVVWILEHRINDEFRGPPKR 621 (938)
Q Consensus 542 ~~~~~t~~r~~~v~fs~p~~~~~~~~lv~~~~~~~~~~~~l~PF~~~vW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 621 (938)
+.+..+.+|.+.++|+.||...+..+++++..
T Consensus 123 ~~~~~~~~r~~~~~~~~p~~~~~~~l~~~~~~------------------------------------------------ 154 (291)
T 2yjp_A 123 ANFTQTPERAEAVDFADPYMKVALGVVSPKNK------------------------------------------------ 154 (291)
T ss_dssp SSCBCCHHHHTTEEECCCCEEECEEEEEETTS------------------------------------------------
T ss_pred eCCCCChHHHccceeccCeeecceEEEEeCCC------------------------------------------------
Confidence 88888999999999999999999999887543
Q ss_pred cchhhhhHHHHHHHhhhhhhhhhhcccCccccchhHHHHHHHHHHHHHHhhhhhhhhhhhhcccccCCCCChHHhhhCCC
Q 002309 622 QVITILWFSLSTLFFAHIAIFVILAEENTVSTLGRLVLIIWLFVVLIINSSYTASLTSILTVQQLYSPINGIESLRKSDD 701 (938)
Q Consensus 622 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~p~s~s~R~~~~~w~~~~lil~s~Yta~L~s~Lt~~~~~~~i~s~~dL~~~~~ 701 (938)
+|++++||. |+
T Consensus 155 -------------------------------------------------------------------~i~sl~dL~--gk 165 (291)
T 2yjp_A 155 -------------------------------------------------------------------PITDMAQLK--DQ 165 (291)
T ss_dssp -------------------------------------------------------------------CCCSGGGGT--TS
T ss_pred -------------------------------------------------------------------CCCCHHHhC--CC
Confidence 678999998 88
Q ss_pred CeeEEeCchHHHHHHHhcccccccccccCCHHHHHHHHhcCCCCCceEEEEecchhHHHHHhcCCcEEEeCccccccce-
Q 002309 702 PIGYQEGSFAEYYLSQELNISKSRLVALRTPEDYAKALKDGPGKGGVAAVVDERPYVELFLSSQCSFRIVGQEFTKSGW- 780 (938)
Q Consensus 702 ~i~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~a~i~~~~~~~~~~~~~~~l~~~~~~~~~~~~- 780 (938)
+|++..|+....++.+.. +..+++.+.+..+.+++|.+ |++|+++.+.+.+.++..+..++.++...+...++
T Consensus 166 ~v~~~~g~~~~~~l~~~~--~~~~~~~~~~~~~~~~~l~~----G~vDa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (291)
T 2yjp_A 166 TLLVNKGTTADAFFTKSH--PEVKLLKFDQNTETFDALKD----GRGVALAHDNALLWAWAKENPNFEVAIGNLGPAEFI 239 (291)
T ss_dssp EEEEETTSHHHHHHHHHC--TTSEEEEESSHHHHHHHHHT----TSSSEEEEEHHHHHHHHHHCTTEEEEECCSSSCEEE
T ss_pred EEEEecCCcHHHHHHHhC--CCceEEEeCCHHHHHHHHHc----CCccEEEecHHHHHHHHHhCCCeEEcCCcccCCcce
Confidence 999999998888885543 33466778899999999999 99999999999998888877778888777777788
Q ss_pred EeeecCCCc-chhhHHHHHHhhhccCcHHHHHHhhcC
Q 002309 781 GFAFPRDSP-LAVDLSSAILELAENGDLQRIHDKWLM 816 (938)
Q Consensus 781 ~~~~~k~sp-l~~~i~~~il~l~e~G~~~~l~~~w~~ 816 (938)
+++++|++| +...||++|.++.++|.+++|.++|+.
T Consensus 240 ~~~~~k~~~~l~~~l~~al~~l~~~g~~~~i~~k~~~ 276 (291)
T 2yjp_A 240 APAVQKGNADLLNWVNGEIAAMKKDGRLKAAYEKTLL 276 (291)
T ss_dssp CCEEETTCHHHHHHHHHHHHHHHHHSHHHHHHHHHTH
T ss_pred EEEEeCCCHHHHHHHHHHHHHHHhCChHHHHHHHhcc
Confidence 999999988 999999999999999999999999987
No 72
>2yln_A Putative ABC transporter, periplasmic binding Pro amino acid; transport protein, solute-BIND protein; HET: CYS GOL; 1.12A {Neisseria gonorrhoeae} PDB: 3zsf_A
Probab=99.77 E-value=1.6e-18 Score=184.75 Aligned_cols=216 Identities=19% Similarity=0.294 Sum_probs=186.6
Q ss_pred CceeEEEecccccccceeeeccCCcceEeeeHHHHHHHHHhCCCCccEEEEecCCCCCCCChhHHHHhhhcceecEEecc
Q 002309 464 GKLLKIGVPNRASYREFVSKVRGSDMFQGFCIDVFTAAVNLLPYAVPYQFVAFGDGHKNPSYTQLVDSITTGVFDAVVGD 543 (938)
Q Consensus 464 g~~lrv~~~~~~~~~~~~~~~~~~~~~~G~~~dll~~la~~l~f~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~D~~~~~ 543 (938)
.++|||++.. .|+||.+.+. ++.+.|+.+|+++.+++++|++ ++++. ..|..++.+|.+|++|++++.
T Consensus 56 ~~~l~v~~~~--~~~P~~~~~~-~g~~~G~~~dl~~~i~~~~G~~--v~~~~-------~~~~~~~~~l~~G~~D~~~~~ 123 (283)
T 2yln_A 56 KGTVTVGTEG--TYAPFTYHDK-DGKLTGYDVEVTRAVAEKLGVK--VEFKE-------TQWDSMMAGLKAGRFDVVANQ 123 (283)
T ss_dssp TCEEEEEECS--EETTTEEECT-TSCEESHHHHHHHHHHHHHTCE--EEEEE-------CCGGGHHHHHHHTSCSEECSS
T ss_pred CCeEEEEECC--CCCCeeEECC-CCCEeeehHHHHHHHHHHcCCc--eEEEE-------CCHHHHHHHHHCCCcCEEEec
Confidence 4579999975 5889988764 6789999999999999999976 55554 239999999999999999888
Q ss_pred Eee-ecCceeeeeeccceecccEEEEEeccCCCCCcceeeccCchhhHHHHHHHHHHHHhhhheeecccCCCCCCCcccc
Q 002309 544 ITI-VTNRTKIVDFSQPYAASGLVVVVPFRKLNTGAWAFLRPFSPLMWTVTACFFVVVGIVVWILEHRINDEFRGPPKRQ 622 (938)
Q Consensus 544 ~~~-t~~r~~~v~fs~p~~~~~~~~lv~~~~~~~~~~~~l~PF~~~vW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 622 (938)
+.. +.+|.+.++|+.||+..+..+++++..
T Consensus 124 ~~~~t~~r~~~~~~~~p~~~~~~~l~~~~~~------------------------------------------------- 154 (283)
T 2yln_A 124 VGLTSPERQATFDKSEPYSWSGAVLVAHNDS------------------------------------------------- 154 (283)
T ss_dssp CCCCSHHHHHHEEECSCSEEECEEEEEETTC-------------------------------------------------
T ss_pred CccCChhhhcceEeccCeeeecEEEEEECCC-------------------------------------------------
Confidence 888 899999999999999999999988654
Q ss_pred chhhhhHHHHHHHhhhhhhhhhhcccCccccchhHHHHHHHHHHHHHHhhhhhhhhhhhhcccccCCCCChHHhhhCCCC
Q 002309 623 VITILWFSLSTLFFAHIAIFVILAEENTVSTLGRLVLIIWLFVVLIINSSYTASLTSILTVQQLYSPINGIESLRKSDDP 702 (938)
Q Consensus 623 ~~~~~~~~~~~l~~~~~~~~~~~~~~~p~s~s~R~~~~~w~~~~lil~s~Yta~L~s~Lt~~~~~~~i~s~~dL~~~~~~ 702 (938)
+|++++||. |++
T Consensus 155 ------------------------------------------------------------------~i~s~~dL~--G~~ 166 (283)
T 2yln_A 155 ------------------------------------------------------------------NIKSIADIK--GVK 166 (283)
T ss_dssp ------------------------------------------------------------------SCCSGGGCT--TSE
T ss_pred ------------------------------------------------------------------CCCCHHHhC--CCE
Confidence 478999996 899
Q ss_pred eeEEeCchHHHHHHHhcccccccccccCCHHHHHHHHhcCCCCCceEEEEecchhHHHHHhcCC--cEEEeC-cccc-cc
Q 002309 703 IGYQEGSFAEYYLSQELNISKSRLVALRTPEDYAKALKDGPGKGGVAAVVDERPYVELFLSSQC--SFRIVG-QEFT-KS 778 (938)
Q Consensus 703 i~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~a~i~~~~~~~~~~~~~~--~l~~~~-~~~~-~~ 778 (938)
|++..|+....++.+ .+ .+++.+.+..+.+++|.+ |++|+++.+...+.+++.+.. ++.+++ ..+. ..
T Consensus 167 v~v~~g~~~~~~l~~-~~---~~~~~~~~~~~~~~~l~~----g~vDa~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 238 (283)
T 2yln_A 167 TAQSLTSNYGEKAKA-AG---AQLVPVDGLAQSLTLIEQ----KRADATLNDELAVLDYLKKNPNAGVKIVWSAPADEKV 238 (283)
T ss_dssp EEECTTSHHHHHHHH-TT---CEEEECSSHHHHHHHHHT----TSCCEEEEEHHHHHHHHHHSTTSSEEEEEECCGGGCE
T ss_pred EEEecCchHHHHHHH-cC---CeEEEeCCHHHHHHHHHc----CCCCEEEecHHHHHHHHHhCCCCcEEEccCcccCCcc
Confidence 999999988888844 32 356678899999999999 899999999999988777654 488887 6677 77
Q ss_pred ceEeeecCCCc-chhhHHHHHHhhhccCcHHHHHHhhcC
Q 002309 779 GWGFAFPRDSP-LAVDLSSAILELAENGDLQRIHDKWLM 816 (938)
Q Consensus 779 ~~~~~~~k~sp-l~~~i~~~il~l~e~G~~~~l~~~w~~ 816 (938)
+++++++|++| +...||++|.++.++|.+++|.++|+.
T Consensus 239 ~~~i~~~k~~~~l~~~i~~al~~l~~~g~~~~i~~k~~~ 277 (283)
T 2yln_A 239 GSGLIVNKGNDEAVAKFSTAINELKADGTLKKLGEQFFG 277 (283)
T ss_dssp EECCEEESSCHHHHHHHHHHHHHHHHTTHHHHHHHHHHS
T ss_pred cEEEEEeCCCHHHHHHHHHHHHHHHHCCcHHHHHHHHcC
Confidence 89999999987 999999999999999999999999997
No 73
>2v25_A Major cell-binding factor; antigen, adhesin, aspartate, glutamate, transport, ABC transport, virulence factor, receptor; 1.49A {Campylobacter jejuni}
Probab=99.67 E-value=9.7e-17 Score=168.43 Aligned_cols=215 Identities=19% Similarity=0.313 Sum_probs=177.9
Q ss_pred CceeEEEecccccccceeeeccCCcceEeeeHHHHHHHHHhC---CCCccEEEEecCCCCCCCChhHHHHhhhcceecEE
Q 002309 464 GKLLKIGVPNRASYREFVSKVRGSDMFQGFCIDVFTAAVNLL---PYAVPYQFVAFGDGHKNPSYTQLVDSITTGVFDAV 540 (938)
Q Consensus 464 g~~lrv~~~~~~~~~~~~~~~~~~~~~~G~~~dll~~la~~l---~f~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~D~~ 540 (938)
.++|||++.. .++||.+.+..++.+.|+++|+++.+++++ |.+ ++++. ..|..++..|.+|++|++
T Consensus 37 ~~~l~vg~~~--~~~p~~~~~~~~g~~~G~~~~l~~~~~~~~~~pg~~--v~~~~-------~~~~~~~~~l~~g~~D~~ 105 (259)
T 2v25_A 37 KGQLIVGVKN--DVPHYALLDQATGEIKGFEVDVAKLLAKSILGDDKK--IKLVA-------VNAKTRGPLLDNGSVDAV 105 (259)
T ss_dssp HTCEEEEECS--EETTTEEEETTTTEEESHHHHHHHHHHHHHHSCTTS--EEEEE-------CCTTTHHHHHHTTSCSEE
T ss_pred CCeEEEEECC--CCCCeEEEECCCCeEEEeeHHHHHHHHHHhcCCCcc--eEEEE-------cCHHHHHHHHhCCCCCEE
Confidence 3579999975 678888876346889999999999999999 876 44544 348999999999999999
Q ss_pred eccEeeecCceeeeeeccceecccEEEEEeccCCCCCcceeeccCchhhHHHHHHHHHHHHhhhheeecccCCCCCCCcc
Q 002309 541 VGDITIVTNRTKIVDFSQPYAASGLVVVVPFRKLNTGAWAFLRPFSPLMWTVTACFFVVVGIVVWILEHRINDEFRGPPK 620 (938)
Q Consensus 541 ~~~~~~t~~r~~~v~fs~p~~~~~~~~lv~~~~~~~~~~~~l~PF~~~vW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 620 (938)
++.+..+.+|.+.++|+.||......+++++..
T Consensus 106 ~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~----------------------------------------------- 138 (259)
T 2v25_A 106 IATFTITPERKRIYNFSEPYYQDAIGLLVLKEK----------------------------------------------- 138 (259)
T ss_dssp CSSCBCCHHHHTTEEECSCSEEEEEEEEEEGGG-----------------------------------------------
T ss_pred EecCccCHHHHhcCcccccceeCceEEEEeCCC-----------------------------------------------
Confidence 888888899999999999999999999987643
Q ss_pred ccchhhhhHHHHHHHhhhhhhhhhhcccCccccchhHHHHHHHHHHHHHHhhhhhhhhhhhhcccccCCCCChHHhhhCC
Q 002309 621 RQVITILWFSLSTLFFAHIAIFVILAEENTVSTLGRLVLIIWLFVVLIINSSYTASLTSILTVQQLYSPINGIESLRKSD 700 (938)
Q Consensus 621 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~p~s~s~R~~~~~w~~~~lil~s~Yta~L~s~Lt~~~~~~~i~s~~dL~~~~ 700 (938)
++++++||. +
T Consensus 139 --------------------------------------------------------------------~i~~~~dL~--g 148 (259)
T 2v25_A 139 --------------------------------------------------------------------KYKSLADMK--G 148 (259)
T ss_dssp --------------------------------------------------------------------CCCSGGGCT--T
T ss_pred --------------------------------------------------------------------CCCCHHHhC--C
Confidence 567899998 8
Q ss_pred CCeeEEeCchHHHHHHHhc---ccccccccccCCHHHHHHHHhcCCCCCceEEEEecchhHHHHHhcCCcEEEeCccccc
Q 002309 701 DPIGYQEGSFAEYYLSQEL---NISKSRLVALRTPEDYAKALKDGPGKGGVAAVVDERPYVELFLSSQCSFRIVGQEFTK 777 (938)
Q Consensus 701 ~~i~~~~~s~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~a~i~~~~~~~~~~~~~~~l~~~~~~~~~ 777 (938)
++|++..|+....++.+.. +.. .+++.+.+..+.+++|.+ |++|+++.+...+.++.++..+ +++..+..
T Consensus 149 ~~i~~~~g~~~~~~~~~~~~~~g~~-~~~~~~~~~~~~~~~l~~----g~vDa~~~~~~~~~~~~~~~~~--~~~~~~~~ 221 (259)
T 2v25_A 149 ANIGVAQAATTKKAIGEAAKKIGID-VKFSEFPDYPSIKAALDA----KRVDAFSVDKSILLGYVDDKSE--ILPDSFEP 221 (259)
T ss_dssp CEEEEETTCSHHHHHHHHHHHTTCC-CEEEEESSHHHHHHHHHT----TSSSEEEEEHHHHTTTCCTTEE--ECSCCCSE
T ss_pred CEEEEecCCchHHHHHHHHHhcCCc-eeEEEeCCHHHHHHHHHc----CCCcEEEecHHHHHHHHHhCCC--cccccccc
Confidence 8899998887777664322 221 245678899999999999 8999999998888777766555 55666667
Q ss_pred cceEeeecCCCc-chhhHHHHHHhhhccCcHHHHHHhhc
Q 002309 778 SGWGFAFPRDSP-LAVDLSSAILELAENGDLQRIHDKWL 815 (938)
Q Consensus 778 ~~~~~~~~k~sp-l~~~i~~~il~l~e~G~~~~l~~~w~ 815 (938)
.+++++++|++| +.+.+|++|.++.++ ++++.+||.
T Consensus 222 ~~~~~~~~k~~~~l~~~~~~~l~~~~~~--~~~i~~k~~ 258 (259)
T 2v25_A 222 QSYGIVTKKDDPAFAKYVDDFVKEHKNE--IDALAKKWG 258 (259)
T ss_dssp EEECCEEETTCHHHHHHHHHHHHHTHHH--HHHHHHHTT
T ss_pred ceeEEEEcCCCHHHHHHHHHHHHHHHHH--HHHHHHHhC
Confidence 789999999986 999999999999999 999999984
No 74
>3n5l_A Binding protein component of ABC phosphonate TRAN; structural genomics, joint center for structural genomics; HET: UNL; 1.97A {Pseudomonas aeruginosa}
Probab=98.64 E-value=1.3e-07 Score=101.05 Aligned_cols=124 Identities=13% Similarity=0.104 Sum_probs=86.0
Q ss_pred CCCCChHHhhh--CCCCeeEE-eCch----HHHH-HHHhccccc---ccccccCCHHHHHHHHhcCCCCCceEEEEecch
Q 002309 688 SPINGIESLRK--SDDPIGYQ-EGSF----AEYY-LSQELNISK---SRLVALRTPEDYAKALKDGPGKGGVAAVVDERP 756 (938)
Q Consensus 688 ~~i~s~~dL~~--~~~~i~~~-~~s~----~~~~-~~~~~~~~~---~~~~~~~~~~~~~~~l~~~~~~g~~~a~i~~~~ 756 (938)
.+|++++||.+ .+++|++. .++. ...+ +.+..+... ...+...+..+.+.+|.. |++|+.+.+..
T Consensus 102 s~i~sl~DL~~~~kgk~ia~~~~gs~~~~l~~~~~l~~~~Gi~~~~~~~~v~~g~~~~~~~al~~----G~vDa~~~~~~ 177 (310)
T 3n5l_A 102 SKIDSLEDMLANAKSLTFGNGDPNSTSGYLVPGYYVFAKNNVDPVKAFKRTLNSSHEVNALAVAN----KQVDVATFNTE 177 (310)
T ss_dssp CSCCSHHHHHHTGGGCEEEECCTTCTTTTHHHHHHTTTTTTCCHHHHSSEEEECCHHHHHHHHHT----TSSSEEEEEHH
T ss_pred CCCCCHHHHhhhcCCCEEEecCCCccHhHHHHHHHHHHHcCCChHHhccccccCCHHHHHHHHHc----CCccEEEecch
Confidence 47899999932 26778864 3332 1221 212233321 122334567788999999 89999999988
Q ss_pred hHHHHHhcC----CcEEEeCccccccceEeeecCCCc--chhhHHHHHHhhhccCcHHHHHHhhc
Q 002309 757 YVELFLSSQ----CSFRIVGQEFTKSGWGFAFPRDSP--LAVDLSSAILELAENGDLQRIHDKWL 815 (938)
Q Consensus 757 ~~~~~~~~~----~~l~~~~~~~~~~~~~~~~~k~sp--l~~~i~~~il~l~e~G~~~~l~~~w~ 815 (938)
.+..+.++. .++.++........++++++++.| ++..++.+|.++.++|...++.++|-
T Consensus 178 ~~~~~~~~~~~~~~~lrvl~~s~~~p~~~i~~~~~~~~~l~~~l~~al~~~~~d~~~~~~l~~~g 242 (310)
T 3n5l_A 178 GMERLELTQPEKARQLKVIWKSPLIPGDPLVWRNNLSDEQKNKLRDFFFKYGANAEQKKVLADLQ 242 (310)
T ss_dssp HHHHHHHHCHHHHTTEEEEEEEEEEECCEEEEETTSCHHHHHHHHHHHHHCCCSHHHHHHHHHTT
T ss_pred hHHHHHHhCccchhCEEEEEECCCCCCCcEEEECCCCHHHHHHHHHHHHhcCCChhHHHHHHhcC
Confidence 887777664 367776554344457899999954 99999999999999998888877763
No 75
>2ozz_A Hypothetical protein YHFZ; alpha-beta structure, structural genomics, PSI-2, protein structure initiative; 2.30A {Shigella flexneri 2A} SCOP: c.94.1.1
Probab=98.56 E-value=7.8e-08 Score=95.42 Aligned_cols=169 Identities=9% Similarity=0.080 Sum_probs=124.7
Q ss_pred CcceEeeeHHHHHHHHHhCCCCccEEEEecCCCCCCCChhHHHHhhhcceecEEeccEeeecC------ceeeeeeccce
Q 002309 487 SDMFQGFCIDVFTAAVNLLPYAVPYQFVAFGDGHKNPSYTQLVDSITTGVFDAVVGDITIVTN------RTKIVDFSQPY 560 (938)
Q Consensus 487 ~~~~~G~~~dll~~la~~l~f~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~D~~~~~~~~t~~------r~~~v~fs~p~ 560 (938)
+.+|+|+.--|.+.+. |+.+++.+. ..|++.+..|.+|++|+++.+++.+++ |...++|+.||
T Consensus 27 s~~yeGlatgl~~~f~---gi~~~i~~m--------rg~~~RI~aL~~gk~D~aI~S~~aa~e~~~~~~r~~~vdFg~~y 95 (231)
T 2ozz_A 27 TRLYEGLASGLKAQFD---GIPFYYAHM--------RGADIRVECLLNGVYDMAVVSRLAAESYLSQNNLCIALELGPHT 95 (231)
T ss_dssp SHHHHHHHHHHHHTTT---TSCEEEEEC--------SCHHHHHHHHHTTSCSEEEEEHHHHHHHHHHSCEEEEEECCTTS
T ss_pred hhhhhHHHHHHHHHhc---CCcEEEEEc--------cChHHHHHHHHcCCCCEEEEecccchhhhcccCeEEEEEcCCCc
Confidence 4678999988887774 755444443 259999999999999999999999999 99999999999
Q ss_pred ecccEEEEEeccCCCCCcceeeccCchhhHHHHHHHHHHHHhhhheeecccCCCCCCCccccchhhhhHHHHHHHhhhhh
Q 002309 561 AASGLVVVVPFRKLNTGAWAFLRPFSPLMWTVTACFFVVVGIVVWILEHRINDEFRGPPKRQVITILWFSLSTLFFAHIA 640 (938)
Q Consensus 561 ~~~~~~~lv~~~~~~~~~~~~l~PF~~~vW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 640 (938)
+...-.++++++..
T Consensus 96 Yv~~h~li~~~~~~------------------------------------------------------------------ 109 (231)
T 2ozz_A 96 YVGEHQLICRKGES------------------------------------------------------------------ 109 (231)
T ss_dssp SSCCEEEEEETTCG------------------------------------------------------------------
T ss_pred cccCeEEEEeCCCc------------------------------------------------------------------
Confidence 98888888776540
Q ss_pred hhhhhcccCccccchhHHHHHHHHHHHHHHhhhhhhhhhhhhcccccCCCCChHHhhhCCCCeeEEeCchHHHHHHHhcc
Q 002309 641 IFVILAEENTVSTLGRLVLIIWLFVVLIINSSYTASLTSILTVQQLYSPINGIESLRKSDDPIGYQEGSFAEYYLSQELN 720 (938)
Q Consensus 641 ~~~~~~~~~p~s~s~R~~~~~w~~~~lil~s~Yta~L~s~Lt~~~~~~~i~s~~dL~~~~~~i~~~~~s~~~~~~~~~~~ 720 (938)
..| ++||+..||..+..+.+...
T Consensus 110 -----------------------------------------------~~i----------krVGvd~gS~dq~~lt~~~~ 132 (231)
T 2ozz_A 110 -----------------------------------------------GNV----------KRVGLDSRSADQKIMTDVFF 132 (231)
T ss_dssp -----------------------------------------------GGC----------CEEEECTTCHHHHHHHHHHH
T ss_pred -----------------------------------------------ccc----------EEEEecCCChhHHHHHhhhc
Confidence 111 57999999988888755332
Q ss_pred ccccccccc-CCHHHHHHHHhcCCCCCceEEEEe--cchhHHHHHhcCCcEEE--eCc---cccccceEeeecCCCc-ch
Q 002309 721 ISKSRLVAL-RTPEDYAKALKDGPGKGGVAAVVD--ERPYVELFLSSQCSFRI--VGQ---EFTKSGWGFAFPRDSP-LA 791 (938)
Q Consensus 721 ~~~~~~~~~-~~~~~~~~~l~~~~~~g~~~a~i~--~~~~~~~~~~~~~~l~~--~~~---~~~~~~~~~~~~k~sp-l~ 791 (938)
....+..+ .+..+++.++.+ |.+||++. |.+... ...++.. +.. ........++++||.+ ++
T Consensus 133 -~g~~Ve~ve~~y~~~i~~L~~----G~IDA~Iwn~d~~~a~----~~~~l~~~~l~~~~~~~~~~eavI~v~k~n~~L~ 203 (231)
T 2ozz_A 133 -GDSDVERVDLSYHESLQRIVK----GDVDAVIWNVVAENEL----TMLGLEATPLTDDPRFLQATEAVVLTRVDDYPMQ 203 (231)
T ss_dssp -TTSCCEEEECCHHHHHHHHHH----TSCCEEEEEC-CHHHH----HHTTEEEEECCSCHHHHHTTCEEEEEETTCHHHH
T ss_pred -CCCeEEEEECCHHHHHHHHHc----CCccEEEEcCcchhhh----cCCCcceeccccccccccCCceEEEEECCCHHHH
Confidence 33445567 788999999999 99999999 666554 2233332 222 2334556689999965 88
Q ss_pred hhHHHHH
Q 002309 792 VDLSSAI 798 (938)
Q Consensus 792 ~~i~~~i 798 (938)
..+|+.|
T Consensus 204 ~~ln~~I 210 (231)
T 2ozz_A 204 QLLRAVV 210 (231)
T ss_dssp HHHHHHC
T ss_pred HHHHHHh
Confidence 8888765
No 76
>3p7i_A PHND, subunit of alkylphosphonate ABC transporter; phosphonate binding protein, transport protein; 1.71A {Escherichia coli UTI89} PDB: 3qk6_A 3quj_A* 3s4u_A
Probab=98.55 E-value=3.2e-07 Score=98.26 Aligned_cols=123 Identities=15% Similarity=0.173 Sum_probs=85.2
Q ss_pred CCCCChHHhhh--CCCCeeEE-eCch----HHHH-HHHhccccccc--ccccCCHHHHHHHHhcCCCCCceEEEEecchh
Q 002309 688 SPINGIESLRK--SDDPIGYQ-EGSF----AEYY-LSQELNISKSR--LVALRTPEDYAKALKDGPGKGGVAAVVDERPY 757 (938)
Q Consensus 688 ~~i~s~~dL~~--~~~~i~~~-~~s~----~~~~-~~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~g~~~a~i~~~~~ 757 (938)
.+|++++||.+ .++++++. .++. .... +.+..+..... .+.+.+..+.+.+|.. |++|+.+.+...
T Consensus 112 s~i~sl~DL~~~~kgk~va~~~~gsts~~l~~~~~l~~~~Gi~~~~~~~v~~~~~~~a~~al~~----G~vDa~~~~~~~ 187 (321)
T 3p7i_A 112 SPINNLNDLLAKRKDLTFGNGDPNSTSGFLVPGYYVFAKNNISASDFKRTVNAGHETNALAVAN----KQVDVATNNTEN 187 (321)
T ss_dssp CSCCSHHHHHHTGGGCEEEECCTTCTTTTHHHHHHTTGGGTCCGGGSSEEEECCHHHHHHHHHT----TSSSEEEEEHHH
T ss_pred CCCCCHHHHHhhcCCCEEEeCCCCccHHHHHHHHHHHHHcCCChhHceeeecCCHHHHHHHHHC----CCceEEEechHH
Confidence 47899999931 26678763 2332 1222 22333333222 2334567889999999 899999999888
Q ss_pred HHHHHhcC----CcEEEeCccccccceEeeecCCCc--chhhHHHHHHhhhccCcHHHHHHhh
Q 002309 758 VELFLSSQ----CSFRIVGQEFTKSGWGFAFPRDSP--LAVDLSSAILELAENGDLQRIHDKW 814 (938)
Q Consensus 758 ~~~~~~~~----~~l~~~~~~~~~~~~~~~~~k~sp--l~~~i~~~il~l~e~G~~~~l~~~w 814 (938)
+..+.++. .++.++........++++++|+-| ++..|+.+|.++.++|...++.+++
T Consensus 188 ~~~~~~~~p~~~~~lrvl~~s~~~p~~~i~~~k~~~~~l~~~l~~aL~~~~~d~~~~~~l~~~ 250 (321)
T 3p7i_A 188 LDKLKTSAPEKLKELKVIWKSPLIPGDPIVWRKNLSETTKDKIYDFFMNYGKTPEEKAVLERL 250 (321)
T ss_dssp HHTHHHHCHHHHTTEEEEEECSCBCCCEEEEETTSCHHHHHHHHHHHHHTTCSHHHHHHHHHH
T ss_pred HHHHHHhCcchhccEEEEEEcCCCCCCceeeeCCCCHHHHHHHHHHHHhcCCCHHHHHHHHhc
Confidence 77776653 367777654444567899999954 9999999999999999888777765
No 77
>2h3h_A Sugar ABC transporter, periplasmic sugar-binding protein; glucose binding protein, periplasmic binding protein, GBP; HET: BGC; 1.70A {Thermotoga maritima} PDB: 2qvc_A* 3c6q_B*
Probab=98.25 E-value=6.8e-05 Score=80.18 Aligned_cols=206 Identities=10% Similarity=0.030 Sum_probs=133.9
Q ss_pred EEEEEEeeCCCcchhHHHHHHHHHHHHHhcCCCCCCCCEEEEEEccCCCChHHHHHHHHHHHhcCcEEEEc-CCChhHHH
Q 002309 32 VNVGALFTLDSTIGRVAKIAIEEAVKDVNSNSSILHGTKLNITMQSSNCSGFIGMVEALRFMETDIVAIIG-PQCSTVAH 110 (938)
Q Consensus 32 i~IG~i~~~~~~~g~~~~~a~~~Av~~iN~~~~il~g~~l~~~~~D~~~~~~~a~~~a~~li~~~V~aviG-p~~s~~~~ 110 (938)
++||++.|....+......+++.+.++. |+++.+.. .+..++....+....++.++|.+||. |..+....
T Consensus 2 ~~Ig~i~~~~~~~~~~~~~gi~~~~~~~--------g~~~~~~~-~~~~~~~~~~~~i~~l~~~~vdgiIi~~~~~~~~~ 72 (313)
T 2h3h_A 2 LTIGVIGKSVHPYWSQVEQGVKAAGKAL--------GVDTKFFV-PQKEDINAQLQMLESFIAEGVNGIAIAPSDPTAVI 72 (313)
T ss_dssp CEEEEECSCSSHHHHHHHHHHHHHHHHH--------TCEEEEEC-CSSSCHHHHHHHHHHHHHTTCSEEEECCSSTTTTH
T ss_pred eEEEEEeCCCcHHHHHHHHHHHHHHHHc--------CCEEEEEC-CCCCCHHHHHHHHHHHHHcCCCEEEEeCCChHHHH
Confidence 5799999875434455667777777653 45554432 23567777777778888888887764 44444333
Q ss_pred HHHHhhccCCccEEEcccCCCCCCCCCCCceEEecCCchHHHHHHHHHHHhc--CCcEEEEEEEc--CccccchHHHHHH
Q 002309 111 IVSYVSNELQVPLLSFGVTDPTLSSLQYPFFVRTTQSDSYQMTAVAEMVSYY--GWNAVSVIFVD--NEYGRNGVSALND 186 (938)
Q Consensus 111 ~va~~~~~~~iP~Is~~~~~~~l~~~~~p~~~r~~ps~~~~~~ai~~~l~~~--~w~~vaii~~d--~~~g~~~~~~l~~ 186 (938)
.....+...++|+|.+....+. .+.+..+.+++...+..+++++... |.++|++|..+ ........+.+.+
T Consensus 73 ~~~~~~~~~~iPvV~~~~~~~~-----~~~~~~V~~d~~~~g~~a~~~L~~~~~G~~~I~~i~~~~~~~~~~~R~~gf~~ 147 (313)
T 2h3h_A 73 PTIKKALEMGIPVVTLDTDSPD-----SGRYVYIGTDNYQAGYTAGLIMKELLGGKGKVVIGTGSLTAMNSLQRIQGFKD 147 (313)
T ss_dssp HHHHHHHHTTCCEEEESSCCTT-----SCCSCEEECCHHHHHHHHHHHHHHHHTSCSEEEEEESCSSCHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCeEEEeCCCCCC-----cceeEEECcCHHHHHHHHHHHHHHHcCCCCEEEEEECCCCCccHHHHHHHHHH
Confidence 3444556689999987543221 1234456688888888899988776 99999999854 3345567788999
Q ss_pred HHhhcceEEEEEeecCCCCCCChhhHHHHHHHHhcC--CceEEEEEeChhhHHHHHHHHHHcCCCCCCeEEEE
Q 002309 187 KLAERRCRISYKSGIPPESGVNTGYVMDLLVKVALM--ESRVIVLHVSPSLGFQVFSVAKYLGMMGNGYVWIA 257 (938)
Q Consensus 187 ~l~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~lk~~--~~~viv~~~~~~~~~~~l~~a~~~g~~~~~~~wi~ 257 (938)
++++.|+++....... .+..+....++++.+. ++++|+.. +...+..+++++++.|.. .+...++
T Consensus 148 ~l~~~g~~~~~~~~~~----~~~~~~~~~~~~~l~~~~~~~ai~~~-~d~~a~g~~~al~~~G~p-~dv~vvg 214 (313)
T 2h3h_A 148 AIKDSEIEIVDILNDE----EDGARAVSLAEAALNAHPDLDAFFGV-YAYNGPAQALVVKNAGKV-GKVKIVC 214 (313)
T ss_dssp HHTTSSCEEEEEEECS----SCHHHHHHHHHHHHHHCTTCCEEEEC-STTHHHHHHHHHHHTTCT-TTSEEEE
T ss_pred HhcCCCCEEEEeecCC----CCHHHHHHHHHHHHHHCcCceEEEEc-CCCccHHHHHHHHHcCCC-CCeEEEE
Confidence 9999998876432222 2244455556655443 45666544 445777899999999953 2333444
No 78
>2qh8_A Uncharacterized protein; conserved domain protein, structural genomics, PSI-2, MCSG, BIG_563.1, protein structure initiative; HET: HIS; 2.20A {Vibrio cholerae o1 biovar eltor str} PDB: 3lkv_A*
Probab=98.25 E-value=4e-05 Score=81.50 Aligned_cols=201 Identities=12% Similarity=0.118 Sum_probs=128.5
Q ss_pred CeeEEEEEEeeCCCcchhHHHHHHHHHHHHHhcCCCCCCCCEEEEEEccCCCChHHHHHHHHHHHhcCcEEEEcCCChhH
Q 002309 29 PAVVNVGALFTLDSTIGRVAKIAIEEAVKDVNSNSSILHGTKLNITMQSSNCSGFIGMVEALRFMETDIVAIIGPQCSTV 108 (938)
Q Consensus 29 ~~~i~IG~i~~~~~~~g~~~~~a~~~Av~~iN~~~~il~g~~l~~~~~D~~~~~~~a~~~a~~li~~~V~aviGp~~s~~ 108 (938)
+.+.+||++.+.+.++-.....|++ +.+++.|.+ .|.++.+.+.|+.+++.........+.+++|.+||... +..
T Consensus 6 ~~t~~IGvi~~~~~p~~~~~~~gi~---~~l~~~Gy~-~g~~v~l~~~~~~~~~~~~~~~~~~l~~~~vDgII~~~-~~~ 80 (302)
T 2qh8_A 6 AKTAKVAVSQIVEHPALDATRQGLL---DGLKAKGYE-EGKNLEFDYKTAQGNPAIAVQIARQFVGENPDVLVGIA-TPT 80 (302)
T ss_dssp -CCEEEEEEESSCCHHHHHHHHHHH---HHHHHTTCC-BTTTEEEEEEECTTCHHHHHHHHHHHHHTCCSEEEEES-HHH
T ss_pred cCCcEEEEEEeccChhHHHHHHHHH---HHHHHcCCC-CCCceEEEEecCCCCHHHHHHHHHHHHhCCCCEEEECC-hHH
Confidence 3578999985444443334445544 445555555 47899999999999999888888888888898888643 223
Q ss_pred HHHHHHhhccCCccEEEcccCCCCCCC------CCCCceEEecCCchHHHHHHHHHHHhc--CCcEEEEEEEcCc-cccc
Q 002309 109 AHIVSYVSNELQVPLLSFGVTDPTLSS------LQYPFFVRTTQSDSYQMTAVAEMVSYY--GWNAVSVIFVDNE-YGRN 179 (938)
Q Consensus 109 ~~~va~~~~~~~iP~Is~~~~~~~l~~------~~~p~~~r~~ps~~~~~~ai~~~l~~~--~w~~vaii~~d~~-~g~~ 179 (938)
...+.. ...++|+|.....++.... ...+++..+. +...+...++++... |.+++++|+.... .+..
T Consensus 81 ~~~~~~--~~~~iPvV~~~~~~~~~~~~v~~~~~~~~~~~gv~--~~~~~~~~~~~l~~~~Pg~~~I~~i~~~~~~~~~~ 156 (302)
T 2qh8_A 81 AQALVS--ATKTIPIVFTAVTDPVGAKLVKQLEQPGKNVTGLS--DLSPVEQHVELIKEILPNVKSIGVVYNPGEANAVS 156 (302)
T ss_dssp HHHHHH--HCSSSCEEEEEESCTTTTTSCSCSSSCCSSEEEEE--CCCCHHHHHHHHHHHSTTCCEEEEEECTTCHHHHH
T ss_pred HHHHHh--cCCCcCEEEEecCCHhhcCccccccCCCCCEEEEE--CCcCHHHHHHHHHHhCCCCcEEEEEecCCCcchHH
Confidence 333333 2679999987655443210 1123444443 222355666777776 9999999996543 3566
Q ss_pred hHHHHHHHHhhcceEEEEEeecCCCCCCChhhHHHHHHHHhcCCceEEEEEeChhhHHHHHHHHHHc
Q 002309 180 GVSALNDKLAERRCRISYKSGIPPESGVNTGYVMDLLVKVALMESRVIVLHVSPSLGFQVFSVAKYL 246 (938)
Q Consensus 180 ~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~lk~~~~~viv~~~~~~~~~~~l~~a~~~ 246 (938)
..+.+++++++.|+++...... . ..+....++++.. ++++|++..+. .+...++.+.+.
T Consensus 157 r~~g~~~al~~~gi~~~~~~~~--~----~~~~~~~~~~l~~-~~dai~~~~D~-~a~g~~~~l~~~ 215 (302)
T 2qh8_A 157 LMELLKLSAAKHGIKLVEATAL--K----SADVQSATQAIAE-KSDVIYALIDN-TVASAIEGMIVA 215 (302)
T ss_dssp HHHHHHHHHHHTTCEEEEEECS--S----GGGHHHHHHHHGG-GCSEEEECSCH-HHHTTHHHHHHH
T ss_pred HHHHHHHHHHHcCCEEEEEecC--C----hHHHHHHHHHHhc-cCCEEEECCcH-hHHHHHHHHHHH
Confidence 7789999999999987654322 2 4567778888864 78887775443 233334444433
No 79
>3ksm_A ABC-type sugar transport system, periplasmic COMP; periplasmic component, PSI- 11023L, structural genomics, protein structure initiative; HET: BDR; 1.90A {Hahella chejuensis}
Probab=98.23 E-value=4.9e-05 Score=79.54 Aligned_cols=207 Identities=10% Similarity=0.021 Sum_probs=137.4
Q ss_pred EEEEEEeeCC-CcchhHHHHHHHHHHHHHhcCCCCCCCCEEEEEEccCCCChHHHHHHHHHHHhcC-cEEEEc-CCChhH
Q 002309 32 VNVGALFTLD-STIGRVAKIAIEEAVKDVNSNSSILHGTKLNITMQSSNCSGFIGMVEALRFMETD-IVAIIG-PQCSTV 108 (938)
Q Consensus 32 i~IG~i~~~~-~~~g~~~~~a~~~Av~~iN~~~~il~g~~l~~~~~D~~~~~~~a~~~a~~li~~~-V~aviG-p~~s~~ 108 (938)
++||++.|.. ..+-.....+++.+.++. |+++.+...++..++....+....++.++ +.+||- |..+..
T Consensus 1 ~~Ig~i~~~~~~~~~~~~~~gi~~~~~~~--------g~~~~~~~~~~~~~~~~~~~~i~~l~~~~~vdgii~~~~~~~~ 72 (276)
T 3ksm_A 1 PKLLLVLKGDSNAYWRQVYLGAQKAADEA--------GVTLLHRSTKDDGDIAGQIQILSYHLSQAPPDALILAPNSAED 72 (276)
T ss_dssp CEEEEECSCSSSTHHHHHHHHHHHHHHHH--------TCEEEECCCSSTTCHHHHHHHHHHHHHHSCCSEEEECCSSTTT
T ss_pred CeEEEEeCCCCChHHHHHHHHHHHHHHHc--------CCEEEEECCCCCCCHHHHHHHHHHHHHhCCCCEEEEeCCCHHH
Confidence 4899999854 444455667777776664 56666655556778888778888888888 988875 333334
Q ss_pred HHHHHHhhccCCccEEEcccCCCCCCCCCCCceEEecCCchHHHHHHHHHHHhc----CCcEEEEEEEc--CccccchHH
Q 002309 109 AHIVSYVSNELQVPLLSFGVTDPTLSSLQYPFFVRTTQSDSYQMTAVAEMVSYY----GWNAVSVIFVD--NEYGRNGVS 182 (938)
Q Consensus 109 ~~~va~~~~~~~iP~Is~~~~~~~l~~~~~p~~~r~~ps~~~~~~ai~~~l~~~----~w~~vaii~~d--~~~g~~~~~ 182 (938)
.......+...++|+|......+. .+....+.+++...+..+++++... |.++++++..+ ........+
T Consensus 73 ~~~~~~~~~~~~ipvV~~~~~~~~-----~~~~~~V~~d~~~~g~~~~~~l~~~~~~~G~~~i~~i~~~~~~~~~~~R~~ 147 (276)
T 3ksm_A 73 LTPSVAQYRARNIPVLVVDSDLAG-----DAHQGLVATDNYAAGQLAARALLATLDLSKERNIALLRLRAGNASTDQREQ 147 (276)
T ss_dssp THHHHHHHHHTTCCEEEESSCCSS-----SCSSEEEECCHHHHHHHHHHHHHHHSCTTSCEEEEECBCCTTCHHHHHHHH
T ss_pred HHHHHHHHHHCCCcEEEEecCCCC-----CCcceEEccCHHHHHHHHHHHHHHhcCcCCCceEEEEEcCCCchhHHHHHH
Confidence 445556677789999987543321 1223456678888899999988877 89999999843 334556778
Q ss_pred HHHHHHhhc-ceEEEEEeecCCCCCCChhhHHHHHHHHhcC--CceEEEEEeChhhHHHHHHHHHHcCCCCCCeEEEE
Q 002309 183 ALNDKLAER-RCRISYKSGIPPESGVNTGYVMDLLVKVALM--ESRVIVLHVSPSLGFQVFSVAKYLGMMGNGYVWIA 257 (938)
Q Consensus 183 ~l~~~l~~~-g~~v~~~~~~~~~~~~~~~d~~~~l~~lk~~--~~~viv~~~~~~~~~~~l~~a~~~g~~~~~~~wi~ 257 (938)
.+.+++++. |+++.... ... .+..+....+.++-+. ++++|+ +.+...+..+++++++.|+ ......++
T Consensus 148 gf~~~l~~~~~~~~~~~~--~~~--~~~~~~~~~~~~~l~~~~~~~ai~-~~~d~~a~g~~~al~~~g~-p~di~vig 219 (276)
T 3ksm_A 148 GFLDVLRKHDKIRIIAAP--YAG--DDRGAARSEMLRLLKETPTIDGLF-TPNESTTIGALVAIRQSGM-SKQFGFIG 219 (276)
T ss_dssp HHHHHHTTCTTEEEEECC--BCC--SSHHHHHHHHHHHHHHCSCCCEEE-CCSHHHHHHHHHHHHHTTC-TTSSEEEE
T ss_pred HHHHHHHhCCCcEEEEEe--cCC--CcHHHHHHHHHHHHHhCCCceEEE-ECCchhhhHHHHHHHHcCC-CCCeEEEE
Confidence 899999988 88876322 111 2344555555555443 345543 3455567779999999997 33334444
No 80
>3brq_A HTH-type transcriptional regulator ASCG; transcriptional repressor structure escherichia coli, struct genomics, PSI-2; HET: FRU; 2.00A {Escherichia coli}
Probab=98.18 E-value=2.2e-05 Score=83.16 Aligned_cols=203 Identities=7% Similarity=-0.036 Sum_probs=130.1
Q ss_pred eeEEEEEEeeC---CCcchhHHHHHHHHHHHHHhcCCCCCCCCEEEEEEccCCCChHHHHHHHHHHHhcCcEEEEcCCCh
Q 002309 30 AVVNVGALFTL---DSTIGRVAKIAIEEAVKDVNSNSSILHGTKLNITMQSSNCSGFIGMVEALRFMETDIVAIIGPQCS 106 (938)
Q Consensus 30 ~~i~IG~i~~~---~~~~g~~~~~a~~~Av~~iN~~~~il~g~~l~~~~~D~~~~~~~a~~~a~~li~~~V~aviGp~~s 106 (938)
.+.+||+++|. +..+......+++.+.++. |+++ .+.++..++.........++.++|.+||.....
T Consensus 18 ~~~~Ig~i~~~~~~~~~~~~~~~~gi~~~~~~~--------g~~~--~~~~~~~~~~~~~~~~~~l~~~~vdgii~~~~~ 87 (296)
T 3brq_A 18 STQTLGLVVTNTLYHGIYFSELLFHAARMAEEK--------GRQL--LLADGKHSAEEERQAIQYLLDLRCDAIMIYPRF 87 (296)
T ss_dssp -CCEEEEEECGGGCC--CHHHHHHHHHHHHHHT--------TCEE--EEECCTTSHHHHHHHHHHHHHTTCSEEEEECSS
T ss_pred CCceEEEEeCCcccCCchHHHHHHHHHHHHHHC--------CCEE--EEEeCCCCHHHHHHHHHHHHhcCCCEEEEecCC
Confidence 46789999996 4555556677777776652 4544 445777777777777777887888888753332
Q ss_pred hHHHHHHHhhcc-CCccEEEcccCCCCCCCCCCCceEEecCCchHHHHHHHHHHHhcCCcEEEEEEEcC--ccccchHHH
Q 002309 107 TVAHIVSYVSNE-LQVPLLSFGVTDPTLSSLQYPFFVRTTQSDSYQMTAVAEMVSYYGWNAVSVIFVDN--EYGRNGVSA 183 (938)
Q Consensus 107 ~~~~~va~~~~~-~~iP~Is~~~~~~~l~~~~~p~~~r~~ps~~~~~~ai~~~l~~~~w~~vaii~~d~--~~g~~~~~~ 183 (938)
.....+. .+.. .++|+|......+ + +.+..+..++...+..+++++...|.++|++|..+. ..+....+.
T Consensus 88 ~~~~~~~-~l~~~~~iPvV~~~~~~~---~---~~~~~V~~d~~~~~~~a~~~l~~~G~~~I~~i~~~~~~~~~~~R~~g 160 (296)
T 3brq_A 88 LSVDEID-DIIDAHSQPIMVLNRRLR---K---NSSHSVWCDHKQTSFNAVAELINAGHQEIAFLTGSMDSPTSIERLAG 160 (296)
T ss_dssp SCHHHHH-HHHHTCSSCEEEESCCCS---S---SGGGEECCCHHHHHHHHHHHHHHTTCCSEEEECCCTTCHHHHHHHHH
T ss_pred CChHHHH-HHHhcCCCCEEEEccccC---C---CCCCEEEEchHHHHHHHHHHHHHCCCceEEEEcCCCCCccHHHHHHH
Confidence 2222333 3445 7999998754321 1 233456677777788888988888999999998543 345667788
Q ss_pred HHHHHhhcceEEEEEeecCCCCCCChhhHHHHHHHHhc--CCceEEEEEeChhhHHHHHHHHHHcCCCCCC
Q 002309 184 LNDKLAERRCRISYKSGIPPESGVNTGYVMDLLVKVAL--MESRVIVLHVSPSLGFQVFSVAKYLGMMGNG 252 (938)
Q Consensus 184 l~~~l~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~lk~--~~~~viv~~~~~~~~~~~l~~a~~~g~~~~~ 252 (938)
+.+++++.|+.+.....+... .+..+....+.++-+ .++++|+. .+...+..+++++++.|+..++
T Consensus 161 f~~~l~~~g~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~ai~~-~~d~~a~g~~~al~~~g~~vP~ 228 (296)
T 3brq_A 161 YKDALAQHGIALNEKLIANGK--WTPASGAEGVEMLLERGAKFSALVA-SNDDMAIGAMKALHERGVAVPE 228 (296)
T ss_dssp HHHHHHTTTCCCCGGGEECCC--SSHHHHHHHHHHHHTC--CCSEEEE-SSHHHHHHHHHHHHHHTCCTTT
T ss_pred HHHHHHHcCCCCChhhEEeCC--CChhHHHHHHHHHHhCCCCCCEEEE-CChHHHHHHHHHHHHcCCCCCC
Confidence 999999998765322112211 223444455566543 35677654 4556677889999999986544
No 81
>3lkv_A Uncharacterized conserved domain protein; ATPase binding cassette, PSI, MCSG, structural genomics, Pro structure initiative; HET: PHE; 2.20A {Vibrio cholerae}
Probab=98.18 E-value=4.9e-05 Score=80.74 Aligned_cols=191 Identities=13% Similarity=0.159 Sum_probs=128.5
Q ss_pred CCeeEEEEEEeeCCCcchhHHHHHHHHHHHHHhcCCCCCCCCEEEEEEccCCCChHHHHHHHHHHHhcCcEEEEcCCChh
Q 002309 28 RPAVVNVGALFTLDSTIGRVAKIAIEEAVKDVNSNSSILHGTKLNITMQSSNCSGFIGMVEALRFMETDIVAIIGPQCST 107 (938)
Q Consensus 28 ~~~~i~IG~i~~~~~~~g~~~~~a~~~Av~~iN~~~~il~g~~l~~~~~D~~~~~~~a~~~a~~li~~~V~aviGp~~s~ 107 (938)
...+++||++.-...+.=...+.|++ +.+++.|.. .|.++++.+.|.++|+..+...+.+++.+++.+||+ ..+.
T Consensus 5 ~~~~~~igi~q~~~hp~ld~~~~G~~---~~L~~~G~~-~g~nv~~~~~~a~gd~~~~~~~~~~l~~~~~DlIia-i~t~ 79 (302)
T 3lkv_A 5 MAKTAKVAVSQIVEHPALDATRQGLL---DGLKAKGYE-EGKNLEFDYKTAQGNPAIAVQIARQFVGENPDVLVG-IATP 79 (302)
T ss_dssp --CCEEEEEEESCCCHHHHHHHHHHH---HHHHHTTCC-BTTTEEEEEEECTTCHHHHHHHHHHHHTTCCSEEEE-ESHH
T ss_pred hcCCceEEEEEeecChhHHHHHHHHH---HHHHhhCcc-cCCcEEEEEEeCCCCHHHHHHHHHHHHhcCCcEEEE-cCCH
Confidence 45689999987655332234556665 445556655 689999999999999999999999999999998886 4455
Q ss_pred HHHHHHHhhccCCccEEEcccCCCCCCC----C--CCCceEEecCCchHHHHHHHHHHHhc--CCcEEEEEEEcCcc-cc
Q 002309 108 VAHIVSYVSNELQVPLLSFGVTDPTLSS----L--QYPFFVRTTQSDSYQMTAVAEMVSYY--GWNAVSVIFVDNEY-GR 178 (938)
Q Consensus 108 ~~~~va~~~~~~~iP~Is~~~~~~~l~~----~--~~p~~~r~~ps~~~~~~ai~~~l~~~--~w~~vaii~~d~~~-g~ 178 (938)
++.+++.. ..++|+|..+.++|.... . ..+++..+. +..-.+..+++++++ +-++|++||...+- ..
T Consensus 80 aa~a~~~~--~~~iPVVf~~v~dp~~~~l~~~~~~~g~nvtGv~--~~~~~~~~l~l~~~l~P~~k~vgvi~~~~~~~s~ 155 (302)
T 3lkv_A 80 TAQALVSA--TKTIPIVFTAVTDPVGAKLVKQLEQPGKNVTGLS--DLSPVEQHVELIKEILPNVKSIGVVYNPGEANAV 155 (302)
T ss_dssp HHHHHHHH--CSSSCEEEEEESCTTTTTSCSCSSSCCSSEEEEE--CCCCHHHHHHHHHHHSTTCCEEEEEECTTCHHHH
T ss_pred HHHHHHhh--cCCCCeEEEecCCcchhhhcccccCCCCcEEEEE--CCcCHHHHHHHHHHhCCCCCEEEEEeCCCcccHH
Confidence 55555543 457999877777765432 1 123444432 222244555666654 78999999965543 34
Q ss_pred chHHHHHHHHhhcceEEEEEeecCCCCCCChhhHHHHHHHHhcCCceEEEEEeChh
Q 002309 179 NGVSALNDKLAERRCRISYKSGIPPESGVNTGYVMDLLVKVALMESRVIVLHVSPS 234 (938)
Q Consensus 179 ~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~lk~~~~~viv~~~~~~ 234 (938)
...+.+++.+++.|+++...... ...++...++.+.. +.+++++..+..
T Consensus 156 ~~~~~~~~~~~~~g~~~v~~~~~------~~~~~~~~~~~l~~-~~d~i~~~~d~~ 204 (302)
T 3lkv_A 156 SLMELLKLSAAKHGIKLVEATAL------KSADVQSATQAIAE-KSDVIYALIDNT 204 (302)
T ss_dssp HHHHHHHHHHHHTTCEEEEEECS------SGGGHHHHHHHHHT-TCSEEEECSCHH
T ss_pred HHHHHHHHHHHHcCCEEEEEecC------ChHHHHHHHHhccC-CeeEEEEeCCcc
Confidence 55678888999999998643321 25677777777654 688888766543
No 82
>2rjo_A Twin-arginine translocation pathway signal protei; PSI-2, NYSGXRC, twin arginine translocation pathway signal P structural genomics; HET: GAL; 2.05A {Burkholderia phytofirmans}
Probab=98.17 E-value=0.00011 Score=79.23 Aligned_cols=205 Identities=9% Similarity=0.011 Sum_probs=131.6
Q ss_pred eeEEEEEEeeCC-CcchhHHHHHHHHHHHHHhcCCCCCCCCEEEEEEccCCCChHHHHHHHHHHHhcC--cEEEEcC-CC
Q 002309 30 AVVNVGALFTLD-STIGRVAKIAIEEAVKDVNSNSSILHGTKLNITMQSSNCSGFIGMVEALRFMETD--IVAIIGP-QC 105 (938)
Q Consensus 30 ~~i~IG~i~~~~-~~~g~~~~~a~~~Av~~iN~~~~il~g~~l~~~~~D~~~~~~~a~~~a~~li~~~--V~aviGp-~~ 105 (938)
.+.+||++.|.. ..+-.....+++.+.++. |+++ .+.++..++....+....++.++ |.+||.. ..
T Consensus 4 ~s~~Igvi~~~~~~~~~~~~~~gi~~~a~~~--------g~~l--~~~~~~~~~~~~~~~i~~l~~~~~~vdgiIi~~~~ 73 (332)
T 2rjo_A 4 GQTTLACSFRSLTNPYYTAFNKGAQSFAKSV--------GLPY--VPLTTEGSSEKGIADIRALLQKTGGNLVLNVDPND 73 (332)
T ss_dssp CCCEEEEEESCTTSHHHHHHHHHHHHHHHHH--------TCCE--EEEECTTCHHHHHHHHHHHHHHTTTCEEEEECCSS
T ss_pred CccEEEEEecCCCcHHHHHHHHHHHHHHHHc--------CCEE--EEecCCCCHHHHHHHHHHHHHCCCCCCEEEEeCCC
Confidence 356899999853 443345556666666553 3444 44566677777667777788888 9988763 33
Q ss_pred hhHHHHHHHhhccCCccEEEcccCCCCCCCCCC--CceEEecCCchHHHHHHHHHHHh--cCCcEEEEEEEc--Cccccc
Q 002309 106 STVAHIVSYVSNELQVPLLSFGVTDPTLSSLQY--PFFVRTTQSDSYQMTAVAEMVSY--YGWNAVSVIFVD--NEYGRN 179 (938)
Q Consensus 106 s~~~~~va~~~~~~~iP~Is~~~~~~~l~~~~~--p~~~r~~ps~~~~~~ai~~~l~~--~~w~~vaii~~d--~~~g~~ 179 (938)
..........+...++|+|......+......+ +.+..+..++...+..+++++.. .|.++|++|... ......
T Consensus 74 ~~~~~~~~~~~~~~~iPvV~~~~~~~~~~~~~~~~~~~~~V~~D~~~~g~~a~~~L~~~~~G~~~I~~i~g~~~~~~~~~ 153 (332)
T 2rjo_A 74 SADARVIVEACSKAGAYVTTIWNKPKDLHPWDYNPNYVAHLSYDGVAYGEETATQLFKSMGGKGGVVALGGIFSNVPAIE 153 (332)
T ss_dssp HHHHHHHHHHHHHHTCEEEEESCCCTTCCGGGGTTTEEEEEECCHHHHHHHHHHHHHHHTTTCEEEEEEECCTTCHHHHH
T ss_pred HHHHHHHHHHHHHCCCeEEEECCCCCcccchhcccceeEEEccChHHHHHHHHHHHHHHcCCCCeEEEEECCCCCccHHH
Confidence 333333444555679999987543322111111 34667788888888989998877 699999999854 334556
Q ss_pred hHHHHHHHHhhc-ceEEEEEeecCCCCCCChhhHHHHHHHHhcC---CceEEEEEeChhhHHHHHHHHHHcCCC
Q 002309 180 GVSALNDKLAER-RCRISYKSGIPPESGVNTGYVMDLLVKVALM---ESRVIVLHVSPSLGFQVFSVAKYLGMM 249 (938)
Q Consensus 180 ~~~~l~~~l~~~-g~~v~~~~~~~~~~~~~~~d~~~~l~~lk~~---~~~viv~~~~~~~~~~~l~~a~~~g~~ 249 (938)
..+.+.+++++. |+++.....-. .+..+....+.++.+. ++++|+ +.+...+..+++++++.|+.
T Consensus 154 R~~Gf~~al~~~pgi~~~~~~~~~----~~~~~~~~~~~~ll~~~~~~~~aI~-~~nd~~A~g~~~al~~~G~~ 222 (332)
T 2rjo_A 154 RKAGLDAALKKFPGIQLLDFQVAD----WNSQKAFPIMQAWMTRFNSKIKGVW-AANDDMALGAIEALRAEGLA 222 (332)
T ss_dssp HHHHHHHHHHTCTTEEEEEEEECT----TCHHHHHHHHHHHHHHHGGGEEEEE-ESSHHHHHHHHHHHHHTTCB
T ss_pred HHHHHHHHHHhCCCcEEEeeccCC----CCHHHHHHHHHHHHHhcCCCeeEEE-ECCCchHHHHHHHHHHcCCC
Confidence 778899999998 98875432211 2244444555555433 455544 34556677899999999975
No 83
>3d02_A Putative LACI-type transcriptional regulator; periplasmic sugar-binding protein, structura genomics; HET: MSE GOL; 1.30A {Klebsiella pneumoniae subsp}
Probab=98.15 E-value=0.00016 Score=76.76 Aligned_cols=209 Identities=10% Similarity=-0.050 Sum_probs=131.8
Q ss_pred eeEEEEEEeeCC-CcchhHHHHHHHHHHHHHhcCCCCCCCCEEEEEEccCCCChHHHHHHHHHHHhcCcEEEE-cCCChh
Q 002309 30 AVVNVGALFTLD-STIGRVAKIAIEEAVKDVNSNSSILHGTKLNITMQSSNCSGFIGMVEALRFMETDIVAII-GPQCST 107 (938)
Q Consensus 30 ~~i~IG~i~~~~-~~~g~~~~~a~~~Av~~iN~~~~il~g~~l~~~~~D~~~~~~~a~~~a~~li~~~V~avi-Gp~~s~ 107 (938)
++.+||++.|.. ..+......+++.+.++. |+++.+ +.++..++....+....++.+++.+|| .|..+.
T Consensus 3 ~~~~Ig~i~~~~~~~~~~~~~~g~~~~~~~~--------g~~~~~-~~~~~~~~~~~~~~~~~l~~~~vdgiii~~~~~~ 73 (303)
T 3d02_A 3 AEKTVVNISKVDGMPWFNRMGEGVVQAGKEF--------NLNASQ-VGPSSTDAPQQVKIIEDLIARKVDAITIVPNDAN 73 (303)
T ss_dssp -CEEEEEECSCSSCHHHHHHHHHHHHHHHHT--------TEEEEE-ECCSSSCHHHHHHHHHHHHHTTCSEEEECCSCHH
T ss_pred CceEEEEEeccCCChHHHHHHHHHHHHHHHc--------CCEEEE-ECCCCCCHHHHHHHHHHHHHcCCCEEEEecCChH
Confidence 468899999864 445556677777777764 344332 234667877777777788888888865 555554
Q ss_pred HHHHHHHhhccCCccEEEcccCCCCCCCCCCCceEEecCCchHHHHHHHHHHHh-cCCc-EEEEEEEc--CccccchHHH
Q 002309 108 VAHIVSYVSNELQVPLLSFGVTDPTLSSLQYPFFVRTTQSDSYQMTAVAEMVSY-YGWN-AVSVIFVD--NEYGRNGVSA 183 (938)
Q Consensus 108 ~~~~va~~~~~~~iP~Is~~~~~~~l~~~~~p~~~r~~ps~~~~~~ai~~~l~~-~~w~-~vaii~~d--~~~g~~~~~~ 183 (938)
........+...++|+|...... .. .+.+..+..++...+..+++++.. .|.+ +++++..+ ........+.
T Consensus 74 ~~~~~~~~~~~~~ipvV~~~~~~--~~---~~~~~~v~~d~~~~g~~a~~~l~~~~g~~~~i~~i~g~~~~~~~~~R~~g 148 (303)
T 3d02_A 74 VLEPVFKKARDAGIVVLTNESPG--QP---SANWDVEIIDNEKFAAEYVEHMAKRMGGKGGYVIYVGSLTVPQHNLWADL 148 (303)
T ss_dssp HHHHHHHHHHHTTCEEEEESCTT--CT---TCSEEEESSCHHHHHHHHHHHHHHHTTTCEEEEEECSCSSCHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCeEEEEecCC--CC---CCceEEEecCHHHHHHHHHHHHHHHhCcCceEEEEecCCCCccHHHHHHH
Confidence 44444456667899999875431 11 133455777888888888898776 8887 99988743 2334556788
Q ss_pred HHHHHhhcc--eEEEEEeecCCCCCCChhhHHHHHHHHhcCC--ceEEEEEeChhhHHHHHHHHHHcCCCCCCeEEEE
Q 002309 184 LNDKLAERR--CRISYKSGIPPESGVNTGYVMDLLVKVALME--SRVIVLHVSPSLGFQVFSVAKYLGMMGNGYVWIA 257 (938)
Q Consensus 184 l~~~l~~~g--~~v~~~~~~~~~~~~~~~d~~~~l~~lk~~~--~~viv~~~~~~~~~~~l~~a~~~g~~~~~~~wi~ 257 (938)
+.+++++.+ +++... .+... .+..+....+.++.... +++|+. .+...+..+++++++.|+. .+...++
T Consensus 149 f~~~l~~~~~~~~~~~~-~~~~~--~~~~~~~~~~~~~l~~~~~~~ai~~-~~d~~a~g~~~al~~~g~~-~dv~vig 221 (303)
T 3d02_A 149 LVKYQKEHYPDMHEVTR-RMPVA--ESVDDSRRTTLDLMKTYPDLKAVVS-FGSNGPIGAGRAVKEKRAK-NKVAVYG 221 (303)
T ss_dssp HHHHHHHHCTTEEESSS-CBSCT--TCHHHHHHHHHHHHHHCTTEEEEEE-SSTTHHHHHHHHHHHTTCT-TTCEEEE
T ss_pred HHHHHHhhCCCCEEEEe-ecCCC--CCHHHHHHHHHHHHHhCCCCCEEEE-eCCcchhHHHHHHHhcCCC-CCeEEEE
Confidence 889998765 444321 11212 23445555666655443 444443 3446777889999999986 3333443
No 84
>2qu7_A Putative transcriptional regulator; structural genomics, PSI-2, protein structure initiative; 2.30A {Staphylococcus saprophyticus subsp}
Probab=98.15 E-value=1.7e-05 Score=83.86 Aligned_cols=206 Identities=10% Similarity=-0.022 Sum_probs=127.7
Q ss_pred CeeEEEEEEeeCCCcchhHHHHHHHHHHHHHhcCCCCCCCCEEEEEEccCCCChHHHHHHHHHHHhcCcEEEEcCCChhH
Q 002309 29 PAVVNVGALFTLDSTIGRVAKIAIEEAVKDVNSNSSILHGTKLNITMQSSNCSGFIGMVEALRFMETDIVAIIGPQCSTV 108 (938)
Q Consensus 29 ~~~i~IG~i~~~~~~~g~~~~~a~~~Av~~iN~~~~il~g~~l~~~~~D~~~~~~~a~~~a~~li~~~V~aviGp~~s~~ 108 (938)
..+.+||++.|.+..+......+++.+.++. |+++.+ .++..++....+....++.++|.+||.......
T Consensus 6 ~~~~~Igvi~~~~~~~~~~~~~gi~~~~~~~--------g~~~~~--~~~~~~~~~~~~~~~~l~~~~vdgiI~~~~~~~ 75 (288)
T 2qu7_A 6 GRSNIIAFIVPDQNPFFTEVLTEISHECQKH--------HLHVAV--ASSEENEDKQQDLIETFVSQNVSAIILVPVKSK 75 (288)
T ss_dssp -CEEEEEEEESSCCHHHHHHHHHHHHHHGGG--------TCEEEE--EECTTCHHHHHHHHHHHHHTTEEEEEECCSSSC
T ss_pred CCCCEEEEEECCCCchHHHHHHHHHHHHHHC--------CCEEEE--EeCCCCHHHHHHHHHHHHHcCccEEEEecCCCC
Confidence 3567899999973333334445555544431 455544 566677777666777788889998886443322
Q ss_pred HHHHHHhhccCCccEEEcccCCCCCCCCCCCceEEecCCchHHHHHHHHHHHhcCCcEEEEEEEc--CccccchHHHHHH
Q 002309 109 AHIVSYVSNELQVPLLSFGVTDPTLSSLQYPFFVRTTQSDSYQMTAVAEMVSYYGWNAVSVIFVD--NEYGRNGVSALND 186 (938)
Q Consensus 109 ~~~va~~~~~~~iP~Is~~~~~~~l~~~~~p~~~r~~ps~~~~~~ai~~~l~~~~w~~vaii~~d--~~~g~~~~~~l~~ 186 (938)
...+..+ .++|+|......+. +.+..+..++...+..+++++...|.++|++|... ..........+.+
T Consensus 76 ~~~~~~l---~~iPvV~~~~~~~~------~~~~~V~~d~~~~g~~a~~~L~~~G~~~I~~i~~~~~~~~~~~R~~gf~~ 146 (288)
T 2qu7_A 76 FQMKREW---LKIPIMTLDRELES------TSLPSITVDNEEAAYIATKRVLESTCKEVGLLLANPNISTTIGRKNGYNK 146 (288)
T ss_dssp CCCCGGG---GGSCEEEESCCCSS------CCCCEEEECHHHHHHHHHHHHHTSSCCCEEEEECCTTSHHHHHHHHHHHH
T ss_pred hHHHHHh---cCCCEEEEecccCC------CCCCEEEECcHHHHHHHHHHHHHcCCCcEEEEecCCCCCCHHHHHHHHHH
Confidence 2222233 78999987543221 23445677888888999999888899999999854 3345566788999
Q ss_pred HHhhcceEEEEEeec--CCCCCC----ChhhHHHHHHHHhcCCceEEEEEeChhhHHHHHHHHHHcCCCCCCeEEE
Q 002309 187 KLAERRCRISYKSGI--PPESGV----NTGYVMDLLVKVALMESRVIVLHVSPSLGFQVFSVAKYLGMMGNGYVWI 256 (938)
Q Consensus 187 ~l~~~g~~v~~~~~~--~~~~~~----~~~d~~~~l~~lk~~~~~viv~~~~~~~~~~~l~~a~~~g~~~~~~~wi 256 (938)
++++.|+.+.....+ ... . +..+....+.++.+.++++|+. .+...+..+++++++.|+..++-+.+
T Consensus 147 ~l~~~g~~~~~~~i~~~~~~--~~~~~~~~~~~~~~~~~l~~~~~ai~~-~~d~~a~g~~~al~~~g~~vP~di~v 219 (288)
T 2qu7_A 147 AISEFDLNVNPSLIHYSDQQ--LGTNAQIYSGYEATKTLLSKGIKGIVA-TNHLLLLGALQAIKESEKEIKKDVII 219 (288)
T ss_dssp HHHHTTCCCCGGGEEECCSS--CSHHHHHHHHHHHHHHHHHTTCCEEEE-CSHHHHHHHHHHHHHSSCCBTTTBEE
T ss_pred HHHHcCCCCCcceEEeccCC--ccccCCHHHHHHHHHHHHhcCCCEEEE-CCcHHHHHHHHHHHHhCCCCCCceEE
Confidence 999998765321111 111 1 1223333444443337787664 45566778899999999865443333
No 85
>3brs_A Periplasmic binding protein/LACI transcriptional; structural genomics, protein structure initiative; 2.00A {Clostridium phytofermentans}
Probab=98.12 E-value=0.00016 Score=76.28 Aligned_cols=208 Identities=9% Similarity=-0.037 Sum_probs=132.0
Q ss_pred eEEEEEEeeCC---CcchhHHHHHHHHHHHHHhcCCCCCCCCEEEEEEccCCCChHHHHHHHHHHHhcCcEEEEcC-CCh
Q 002309 31 VVNVGALFTLD---STIGRVAKIAIEEAVKDVNSNSSILHGTKLNITMQSSNCSGFIGMVEALRFMETDIVAIIGP-QCS 106 (938)
Q Consensus 31 ~i~IG~i~~~~---~~~g~~~~~a~~~Av~~iN~~~~il~g~~l~~~~~D~~~~~~~a~~~a~~li~~~V~aviGp-~~s 106 (938)
+.+||++.|.. ..+......+++.+.++. |+++.+...|+..++....+....++.++|.+||.. ...
T Consensus 5 ~~~Ig~v~~~~~~~~~~~~~~~~gi~~~a~~~--------g~~~~~~~~~~~~~~~~~~~~~~~l~~~~vdgii~~~~~~ 76 (289)
T 3brs_A 5 QYYMICIPKVLDDSSDFWSVLVEGAQMAAKEY--------EIKLEFMAPEKEEDYLVQNELIEEAIKRKPDVILLAAADY 76 (289)
T ss_dssp CCEEEEECSCCCSSSHHHHHHHHHHHHHHHHH--------TCEEEECCCSSTTCHHHHHHHHHHHHHTCCSEEEECCSCT
T ss_pred CcEEEEEeCCCCCCchHHHHHHHHHHHHHHHc--------CCEEEEecCCCCCCHHHHHHHHHHHHHhCCCEEEEeCCCh
Confidence 46799999854 344445667777666654 455555444446777777777778888889887753 333
Q ss_pred hHHHHHHHhhccCCccEEEcccCCCCCCCCCCCceEEecCCchHHHHHHHHHHHhc-C-CcEEEEEEEc--CccccchHH
Q 002309 107 TVAHIVSYVSNELQVPLLSFGVTDPTLSSLQYPFFVRTTQSDSYQMTAVAEMVSYY-G-WNAVSVIFVD--NEYGRNGVS 182 (938)
Q Consensus 107 ~~~~~va~~~~~~~iP~Is~~~~~~~l~~~~~p~~~r~~ps~~~~~~ai~~~l~~~-~-w~~vaii~~d--~~~g~~~~~ 182 (938)
.........+...++|+|......+. .+.+..+.+++...+..+++++... | .++|++|..+ ........+
T Consensus 77 ~~~~~~~~~~~~~~iPvV~~~~~~~~-----~~~~~~V~~D~~~~g~~~~~~L~~~~G~~~~i~~i~~~~~~~~~~~R~~ 151 (289)
T 3brs_A 77 EKTYDAAKEIKDAGIKLIVIDSGMKQ-----DIADITVATDNIQAGIRIGAVTKNLVRKSGKIGVISFVKNSKTAMDREE 151 (289)
T ss_dssp TTTHHHHTTTGGGTCEEEEESSCCSS-----CCCSEEEECCHHHHHHHHHHHHHHHTSSSCEEEEEESCTTSHHHHHHHH
T ss_pred HHhHHHHHHHHHCCCcEEEECCCCCC-----CcceEEEeeChHHHHHHHHHHHHHHcCCCceEEEEECCCCCccHHHHHH
Confidence 32223344556679999987543221 1234567788888888888987774 6 9999999854 334556678
Q ss_pred HHHHHHhhcceEEEEEeecCCCCCCChhhHHHHHHHHhcC--CceEEEEEeChhhHHHHHHHHHHcCCCCCCeEEEE
Q 002309 183 ALNDKLAERRCRISYKSGIPPESGVNTGYVMDLLVKVALM--ESRVIVLHVSPSLGFQVFSVAKYLGMMGNGYVWIA 257 (938)
Q Consensus 183 ~l~~~l~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~lk~~--~~~viv~~~~~~~~~~~l~~a~~~g~~~~~~~wi~ 257 (938)
.+.+++++.|..+.... .. . .+..+....+.++.+. .+++|+ +.+...+..+++++++.|+. .+...++
T Consensus 152 gf~~~l~~~g~~~~~~~-~~-~--~~~~~~~~~~~~~l~~~~~~~ai~-~~~d~~a~g~~~al~~~G~~-~di~vvg 222 (289)
T 3brs_A 152 GLKIGLSDDSNKIEAIY-YC-D--SNYDKAYDGTVELLTKYPDISVMV-GLNQYSATGAARAIKDMSLE-AKVKLVC 222 (289)
T ss_dssp HHHHHHGGGGGGEEEEE-EC-T--TCHHHHHHHHHHHHHHCTTEEEEE-ESSHHHHHHHHHHHHHTTCT-TTSEEEE
T ss_pred HHHHHHHhCCCcEEeee-cC-C--CCHHHHHHHHHHHHHhCCCceEEE-ECCCcchHHHHHHHHhcCCC-CCEEEEE
Confidence 89999999886543322 11 1 2244444555555443 355544 34556677889999999986 3333443
No 86
>3rot_A ABC sugar transporter, periplasmic sugar binding; nysgrc, PSI-biology, structural genomics; 1.91A {Legionella pneumophila subsp}
Probab=98.10 E-value=8.7e-05 Score=78.64 Aligned_cols=205 Identities=8% Similarity=-0.053 Sum_probs=137.7
Q ss_pred eEEEEEEeeCC-CcchhHHHHHHHHHHHHHhcCCCCCCCCEEEEEEccCCCChHHHHHHHHHHHhcCcEEEE-cCCChhH
Q 002309 31 VVNVGALFTLD-STIGRVAKIAIEEAVKDVNSNSSILHGTKLNITMQSSNCSGFIGMVEALRFMETDIVAII-GPQCSTV 108 (938)
Q Consensus 31 ~i~IG~i~~~~-~~~g~~~~~a~~~Av~~iN~~~~il~g~~l~~~~~D~~~~~~~a~~~a~~li~~~V~avi-Gp~~s~~ 108 (938)
.++||++.|.. ..+-.....+++.+.++. |+++.+...++..++....+....++.++|.+|| .|.....
T Consensus 3 ~~~Igvi~~~~~~~~~~~~~~gi~~~a~~~--------g~~~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiii~~~~~~~ 74 (297)
T 3rot_A 3 RDKYYLITHGSQDPYWTSLFQGAKKAAEEL--------KVDLQILAPPGANDVPKQVQFIESALATYPSGIATTIPSDTA 74 (297)
T ss_dssp CCEEEEECSCCCSHHHHHHHHHHHHHHHHH--------TCEEEEECCSSSCCHHHHHHHHHHHHHTCCSEEEECCCCSST
T ss_pred eEEEEEEecCCCCchHHHHHHHHHHHHHHh--------CcEEEEECCCCcCCHHHHHHHHHHHHHcCCCEEEEeCCCHHH
Confidence 47899999975 444456677777777764 4555543322225888877888888888888776 5555554
Q ss_pred HHHHHHhhccCCccEEEcccCCCCCCCCCCCceEEecCCchHHHHHHHHHHHhcC--CcEEEEEEEc--CccccchHHHH
Q 002309 109 AHIVSYVSNELQVPLLSFGVTDPTLSSLQYPFFVRTTQSDSYQMTAVAEMVSYYG--WNAVSVIFVD--NEYGRNGVSAL 184 (938)
Q Consensus 109 ~~~va~~~~~~~iP~Is~~~~~~~l~~~~~p~~~r~~ps~~~~~~ai~~~l~~~~--w~~vaii~~d--~~~g~~~~~~l 184 (938)
.......+...+||+|......+.. ...+.+..+.+++...+..+++++...+ -++++++..+ ........+.+
T Consensus 75 ~~~~~~~~~~~giPvV~~~~~~~~~--~~~~~~~~V~~D~~~~g~~a~~~l~~~g~~~~~i~~i~g~~~~~~~~~R~~Gf 152 (297)
T 3rot_A 75 FSKSLQRANKLNIPVIAVDTRPKDK--TKNPYLVFLGSDNLLAGKKLGEKALELTPSAKRALVLNPQPGHIGLEKRAYGI 152 (297)
T ss_dssp THHHHHHHHHHTCCEEEESCCCSCT--TTSCCSCEEECCHHHHHHHHHHHHHHHCTTCCEEEEEESCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCCEEEEcCCCccc--cccCcceEEccChHHHHHHHHHHHHHhcCCCceEEEEeCCCCcHHHHHHHHHH
Confidence 4555566677799999875443321 1123455677888888999999988887 8999999744 33445667889
Q ss_pred HHHHhhcceEEEEEeecCCCCCCChhhHHHHHHHHhcC--CceEEEEEeChhhHHHHHHHHHHcCCCCC
Q 002309 185 NDKLAERRCRISYKSGIPPESGVNTGYVMDLLVKVALM--ESRVIVLHVSPSLGFQVFSVAKYLGMMGN 251 (938)
Q Consensus 185 ~~~l~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~lk~~--~~~viv~~~~~~~~~~~l~~a~~~g~~~~ 251 (938)
.+++++.|+++.... . . .........+.++.+. ++++|+ +.+...+..+++++++.|+..+
T Consensus 153 ~~~l~~~g~~~~~~~--~-~--~~~~~~~~~~~~~l~~~~~~~ai~-~~~d~~A~g~~~al~~~g~~vP 215 (297)
T 3rot_A 153 KTILQDKGIFFEELD--V-G--TDPNQVQSRVKSYFKIHPETNIIF-CLTSQALDPLGQMLLHPDRYDF 215 (297)
T ss_dssp HHHHHHTTCEEEEEE--C-C--SCHHHHHHHHHHHHHHCTTCCEEE-ESSHHHHHHHHHHHHSHHHHTC
T ss_pred HHHHHhcCCeEEEee--c-C--CChHHHHHHHHHHHHhCCCCCEEE-EcCCcchHHHHHHHHhcCCccC
Confidence 999999999886543 2 1 2245555556664333 345544 4555677788999998887544
No 87
>1tjy_A Sugar transport protein; protein-ligand complex, signaling protein; HET: PAV; 1.30A {Salmonella typhimurium} SCOP: c.93.1.1 PDB: 1tm2_A 3t95_A* 3ejw_A*
Probab=98.09 E-value=0.00026 Score=75.70 Aligned_cols=204 Identities=11% Similarity=-0.009 Sum_probs=128.0
Q ss_pred EEEEEeeCC-CcchhHHHHHHHHHHHHHhcCCCCCCCCEEEEEEc-cCCCChHHHHHHHHHHHhcCcEEEE-cCCChhHH
Q 002309 33 NVGALFTLD-STIGRVAKIAIEEAVKDVNSNSSILHGTKLNITMQ-SSNCSGFIGMVEALRFMETDIVAII-GPQCSTVA 109 (938)
Q Consensus 33 ~IG~i~~~~-~~~g~~~~~a~~~Av~~iN~~~~il~g~~l~~~~~-D~~~~~~~a~~~a~~li~~~V~avi-Gp~~s~~~ 109 (938)
+||++.|.. .++......+++.+.++.+ ++ +.+. ++..++....+....++.++|.+|| .|..+...
T Consensus 5 ~Igvi~~~~~~~~~~~~~~g~~~~~~~~g--------~~--~~~~~~~~~d~~~q~~~i~~li~~~vdgiii~~~~~~~~ 74 (316)
T 1tjy_A 5 RIAFIPKLVGVGFFTSGGNGAQEAGKALG--------ID--VTYDGPTEPSVSGQVQLVNNFVNQGYDAIIVSAVSPDGL 74 (316)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHHHHHHHT--------CE--EEECCCSSCCHHHHHHHHHHHHHTTCSEEEECCSSSSTT
T ss_pred EEEEEeCCCCChHHHHHHHHHHHHHHHhC--------CE--EEEECCCCCCHHHHHHHHHHHHHcCCCEEEEeCCCHHHH
Confidence 799999864 4444456677777776653 33 4455 4677888877888888888988754 56655543
Q ss_pred HHHHHhhccCCccEEEcccCCCCCCCCCCCceEEecCCchHHHHHHHHHHHh---cCCcEEEEEEEc--CccccchHHHH
Q 002309 110 HIVSYVSNELQVPLLSFGVTDPTLSSLQYPFFVRTTQSDSYQMTAVAEMVSY---YGWNAVSVIFVD--NEYGRNGVSAL 184 (938)
Q Consensus 110 ~~va~~~~~~~iP~Is~~~~~~~l~~~~~p~~~r~~ps~~~~~~ai~~~l~~---~~w~~vaii~~d--~~~g~~~~~~l 184 (938)
..+...+...+||+|.+....+ .. .+..+....++...+...++++.. .|-+++++|... +.......+.+
T Consensus 75 ~~~~~~a~~~gipvV~~d~~~~---~~-~~~~~v~~~D~~~~g~~~~~~L~~~~~~g~~~i~~i~g~~~~~~~~~r~~g~ 150 (316)
T 1tjy_A 75 CPALKRAMQRGVKILTWDSDTK---PE-CRSYYINQGTPKQLGSMLVEMAAHQVDKEKAKVAFFYSSPTVTDQNQWVKEA 150 (316)
T ss_dssp HHHHHHHHHTTCEEEEESSCCC---GG-GCSEEEESCCHHHHHHHHHHHHHHHHCSSSEEEEEEESCSSCHHHHHHHHHH
T ss_pred HHHHHHHHHCcCEEEEecCCCC---CC-CceEEEecCCHHHHHHHHHHHHHHHcCCCCCEEEEEEcCCCChhHHHHHHHH
Confidence 4455566778999998743221 11 112232256777778888888765 578999999843 33445667788
Q ss_pred HHHHhhc--ceEEEEEeecCCCCCCChhhHHHHHHHHhcC--CceEEEEEeChhhHHHHHHHHHHcCCCCCCeEEEE
Q 002309 185 NDKLAER--RCRISYKSGIPPESGVNTGYVMDLLVKVALM--ESRVIVLHVSPSLGFQVFSVAKYLGMMGNGYVWIA 257 (938)
Q Consensus 185 ~~~l~~~--g~~v~~~~~~~~~~~~~~~d~~~~l~~lk~~--~~~viv~~~~~~~~~~~l~~a~~~g~~~~~~~wi~ 257 (938)
.+.+++. ++++.....-. .+.++....++++... ++++|+. .+...+..+++++++.| . .....++
T Consensus 151 ~~~l~~~~~~~~~~~~~~~~----~~~~~~~~~~~~ll~~~~~~~aI~~-~nD~~A~g~~~al~~~G-~-~dv~VvG 220 (316)
T 1tjy_A 151 KAKISQEHPGWEIVTTQFGY----NDATKSLQTAEGIIKAYPDLDAIIA-PDANALPAAAQAAENLK-R-NNLAIVG 220 (316)
T ss_dssp HHHHHHHCTTEEEEEEEECT----TCHHHHHHHHHHHHHHCSSCCEEEE-CSTTHHHHHHHHHHHTT-C-CSCEEEE
T ss_pred HHHHHhhCCCcEEEEeccCC----CCHHHHHHHHHHHHHhCCCCCEEEE-CCCccHHHHHHHHHHcC-C-CCEEEEE
Confidence 8888765 66665432211 2244455555555443 3455443 44566777899999988 5 3333443
No 88
>1dbq_A Purine repressor; transcription regulation, DNA-binding regulatory protein; 2.20A {Escherichia coli} SCOP: c.93.1.1 PDB: 1jhz_A
Probab=98.04 E-value=0.00015 Score=76.34 Aligned_cols=203 Identities=8% Similarity=0.009 Sum_probs=127.6
Q ss_pred eeEEEEEEeeCC-CcchhHHHHHHHHHHHHHhcCCCCCCCCEEEEEEccCCCChHHHHHHHHHHHhcCcEEEEc-CCChh
Q 002309 30 AVVNVGALFTLD-STIGRVAKIAIEEAVKDVNSNSSILHGTKLNITMQSSNCSGFIGMVEALRFMETDIVAIIG-PQCST 107 (938)
Q Consensus 30 ~~i~IG~i~~~~-~~~g~~~~~a~~~Av~~iN~~~~il~g~~l~~~~~D~~~~~~~a~~~a~~li~~~V~aviG-p~~s~ 107 (938)
...+||++.|.. ..+......+++.+.++. |+++.+ .++..++....+....++.++|.+||. |....
T Consensus 6 ~~~~Ig~i~~~~~~~~~~~~~~gi~~~~~~~--------g~~~~~--~~~~~~~~~~~~~~~~l~~~~vdgii~~~~~~~ 75 (289)
T 1dbq_A 6 HTKSIGLLATSSEAAYFAEIIEAVEKNCFQK--------GYTLIL--GNAWNNLEKQRAYLSMMAQKRVDGLLVMCSEYP 75 (289)
T ss_dssp --CEEEEEESCTTSHHHHHHHHHHHHHHHHH--------TCEEEE--EECTTCHHHHHHHHHHHHHTTCSEEEEECSCCC
T ss_pred CCCEEEEEeCCCCChHHHHHHHHHHHHHHHc--------CCeEEE--EcCCCChHHHHHHHHHHHhCCCCEEEEEeccCC
Confidence 456899999864 444455667777777653 455544 566677777666777778788888774 33221
Q ss_pred HHHHHHHhhcc-CCccEEEcccCCCCCCCCCCCceEEecCCchHHHHHHHHHHHhcCCcEEEEEEEc--CccccchHHHH
Q 002309 108 VAHIVSYVSNE-LQVPLLSFGVTDPTLSSLQYPFFVRTTQSDSYQMTAVAEMVSYYGWNAVSVIFVD--NEYGRNGVSAL 184 (938)
Q Consensus 108 ~~~~va~~~~~-~~iP~Is~~~~~~~l~~~~~p~~~r~~ps~~~~~~ai~~~l~~~~w~~vaii~~d--~~~g~~~~~~l 184 (938)
. .+.+.+.. .++|+|......+. . ++...+.+++...+..+++++...|.++|++|..+ ........+.+
T Consensus 76 ~--~~~~~l~~~~~iPvV~~~~~~~~---~--~~~~~V~~d~~~~~~~~~~~L~~~G~~~i~~i~~~~~~~~~~~R~~g~ 148 (289)
T 1dbq_A 76 E--PLLAMLEEYRHIPMVVMDWGEAK---A--DFTDAVIDNAFEGGYMAGRYLIERGHREIGVIPGPLERNTGAGRLAGF 148 (289)
T ss_dssp H--HHHHHHHHTTTSCEEEEECSSCC---S--SSCEEEEECHHHHHHHHHHHHHHTTCCSEEEECCC------CHHHHHH
T ss_pred H--HHHHHHHhccCCCEEEEccCCCc---c--CcCCEEEeCcHHHHHHHHHHHHHCCCCeEEEEecCCccccHHHHHHHH
Confidence 1 22333333 79999987543221 1 22345667888888999999888899999999854 33566778899
Q ss_pred HHHHhhcceEEEEEeecCCCCCCChhhHHHHHHHHhc--CCceEEEEEeChhhHHHHHHHHHHcCCCCCC
Q 002309 185 NDKLAERRCRISYKSGIPPESGVNTGYVMDLLVKVAL--MESRVIVLHVSPSLGFQVFSVAKYLGMMGNG 252 (938)
Q Consensus 185 ~~~l~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~lk~--~~~~viv~~~~~~~~~~~l~~a~~~g~~~~~ 252 (938)
.+++++.|+.+.....+... .+..+....+.++.+ .++++|+. .+...+..+++++++.|+..++
T Consensus 149 ~~~l~~~g~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~ai~~-~~d~~a~g~~~al~~~G~~vP~ 215 (289)
T 1dbq_A 149 MKAMEEAMIKVPESWIVQGD--FEPESGYRAMQQILSQPHRPTAVFC-GGDIMAMGALCAADEMGLRVPQ 215 (289)
T ss_dssp HHHHHHTTCCCCGGGBCCCC--SSHHHHHHHHHHHHTSSSCCSEEEE-SCHHHHHHHHHHHHHTTCCTTT
T ss_pred HHHHHHCCCCCChHHeEeCC--CCHHHHHHHHHHHHhCCCCCCEEEE-CCcHHHHHHHHHHHHcCCCCCC
Confidence 99999998764321112111 223444455555544 35676654 4556777899999999986544
No 89
>3lft_A Uncharacterized protein; ABC, ATPase, cassette, L-Trp, PSI, MCSG, structural genomics center for structural genomics; HET: MSE TRP; 1.35A {Streptococcus pneumoniae}
Probab=98.03 E-value=0.00039 Score=73.47 Aligned_cols=200 Identities=9% Similarity=0.089 Sum_probs=128.0
Q ss_pred eEEEEEEeeCCCcchhHHHHHHHHHHHHHhcCCCCCCCCEEEEEEccCCCChHHHHHHHHHHHhcCcEEEEcCCChhHHH
Q 002309 31 VVNVGALFTLDSTIGRVAKIAIEEAVKDVNSNSSILHGTKLNITMQSSNCSGFIGMVEALRFMETDIVAIIGPQCSTVAH 110 (938)
Q Consensus 31 ~i~IG~i~~~~~~~g~~~~~a~~~Av~~iN~~~~il~g~~l~~~~~D~~~~~~~a~~~a~~li~~~V~aviGp~~s~~~~ 110 (938)
..+||++-+.+.++-.....|++-+++ +.| . .|.++.+.+.|+.+++.........+.+++|.+||... +....
T Consensus 2 ~~~Igvi~~~~~p~~~~i~~gi~~~l~---~~g-y-~g~~v~l~~~~~~~~~~~~~~~~~~l~~~~vDgII~~~-~~~~~ 75 (295)
T 3lft_A 2 NAKIGVLQFVSHPSLDLIYKGIQDGLA---EEG-Y-KDDQVKIDFMNSEGDQSKVATMSKQLVANGNDLVVGIA-TPAAQ 75 (295)
T ss_dssp CEEEEEEECSCCHHHHHHHHHHHHHHH---HTT-C-CGGGEEEEEEECTTCHHHHHHHHHHHTTSSCSEEEEES-HHHHH
T ss_pred ceEEEEEEccCChhHHHHHHHHHHHHH---HcC-C-CCCceEEEEecCCCCHHHHHHHHHHHHhcCCCEEEECC-cHHHH
Confidence 468998833344332344455554443 333 3 46788899999999999888888888888898888643 32333
Q ss_pred HHHHhhccCCccEEEcccCCCCCCC------CCCCceEEecCCchHHHHHHHHHHHhc--CCcEEEEEEEcCc-cccchH
Q 002309 111 IVSYVSNELQVPLLSFGVTDPTLSS------LQYPFFVRTTQSDSYQMTAVAEMVSYY--GWNAVSVIFVDNE-YGRNGV 181 (938)
Q Consensus 111 ~va~~~~~~~iP~Is~~~~~~~l~~------~~~p~~~r~~ps~~~~~~ai~~~l~~~--~w~~vaii~~d~~-~g~~~~ 181 (938)
.+... ..++|+|.....++.... ....++..+. +..-+...++++... |.+++++|+.+.. .+....
T Consensus 76 ~~~~~--~~~iPvV~~~~~~~~~~~~v~~~~~~~~~~~gv~--~~~~~~~~~~~l~~~~pg~~~I~~i~~~~~~~~~~r~ 151 (295)
T 3lft_A 76 GLASA--TKDLPVIMAAITDPIGANLVKDLKKPGGNVTGVS--DHNPAQQQVELIKALTPNVKTIGALYSSSEDNSKTQV 151 (295)
T ss_dssp HHHHH--CSSSCEEEESCSCTTTTTSCSCSSCCCSSEEEEE--ECCCHHHHHHHHHHHCTTCCEEEEEEETTCHHHHHHH
T ss_pred HHHHc--CCCCCEEEEeccChhhcCccccccCCCCcEEEEE--CCccHHHHHHHHHHhCCCCcEEEEEeCCCCcchHHHH
Confidence 33322 469999986554443211 0112344333 333466677777776 8999999997654 345667
Q ss_pred HHHHHHHhhcceEEEEEeecCCCCCCChhhHHHHHHHHhcCCceEEEEEeChhhHHHHHHHHHHcCC
Q 002309 182 SALNDKLAERRCRISYKSGIPPESGVNTGYVMDLLVKVALMESRVIVLHVSPSLGFQVFSVAKYLGM 248 (938)
Q Consensus 182 ~~l~~~l~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~lk~~~~~viv~~~~~~~~~~~l~~a~~~g~ 248 (938)
+.+++++++.|+++...... . ..+....++++.. ++++|++..+ ..+...++++.+.+.
T Consensus 152 ~g~~~al~~~gi~~~~~~~~--~----~~~~~~~~~~l~~-~~dai~~~~D-~~a~g~~~~l~~~~~ 210 (295)
T 3lft_A 152 EEFKAYAEKAGLTVETFAVP--S----TNEIASTVTVMTS-KVDAIWVPID-NTIASGFPTVVSSNQ 210 (295)
T ss_dssp HHHHHHHHHTTCEEEEEEES--S----GGGHHHHHHHHTT-TCSEEEECSC-HHHHHTHHHHHHHTT
T ss_pred HHHHHHHHHcCCEEEEEecC--C----HHHHHHHHHHHHh-cCCEEEECCc-hhHHHHHHHHHHHHH
Confidence 88999999999987654322 1 4567777888764 7888877544 345556677777664
No 90
>3l49_A ABC sugar (ribose) transporter, periplasmic substrate-binding subunit; sugar binding/transporter, structural genomics, PSI; HET: UNL; 2.30A {Rhodobacter sphaeroides}
Probab=98.02 E-value=0.00018 Score=75.89 Aligned_cols=200 Identities=11% Similarity=-0.056 Sum_probs=131.7
Q ss_pred eEEEEEEeeCC-CcchhHHHHHHHHHHHHHhcCCCCCCCCEEEEEEccCCCChHHHHHHHHHHHhcCcEEEE-cCCChhH
Q 002309 31 VVNVGALFTLD-STIGRVAKIAIEEAVKDVNSNSSILHGTKLNITMQSSNCSGFIGMVEALRFMETDIVAII-GPQCSTV 108 (938)
Q Consensus 31 ~i~IG~i~~~~-~~~g~~~~~a~~~Av~~iN~~~~il~g~~l~~~~~D~~~~~~~a~~~a~~li~~~V~avi-Gp~~s~~ 108 (938)
+.+||++.|.. ..+-.....+++.+.++. |+++ .+.++..++.........++.++|.+|| .|..+..
T Consensus 5 ~~~Ig~i~~~~~~~~~~~~~~gi~~~a~~~--------g~~~--~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~~~ 74 (291)
T 3l49_A 5 GKTIGITAIGTDHDWDLKAYQAQIAEIERL--------GGTA--IALDAGRNDQTQVSQIQTLIAQKPDAIIEQLGNLDV 74 (291)
T ss_dssp TCEEEEEESCCSSHHHHHHHHHHHHHHHHT--------TCEE--EEEECTTCHHHHHHHHHHHHHHCCSEEEEESSCHHH
T ss_pred CcEEEEEeCCCCChHHHHHHHHHHHHHHHc--------CCEE--EEEcCCCCHHHHHHHHHHHHHcCCCEEEEeCCChhh
Confidence 46899999964 333344556666665553 3444 4456777877777777788888888876 5666555
Q ss_pred HHHHHHhhccCCccEEEcccCCCCCCCCCCCceEEecCCchHHHHHHHHHHHh--cCCcEEEEEEEcC--ccccchHHHH
Q 002309 109 AHIVSYVSNELQVPLLSFGVTDPTLSSLQYPFFVRTTQSDSYQMTAVAEMVSY--YGWNAVSVIFVDN--EYGRNGVSAL 184 (938)
Q Consensus 109 ~~~va~~~~~~~iP~Is~~~~~~~l~~~~~p~~~r~~ps~~~~~~ai~~~l~~--~~w~~vaii~~d~--~~g~~~~~~l 184 (938)
.......+...++|+|......+ +.+-.+..++...+..+++++.. .|-++++++..+. .......+.+
T Consensus 75 ~~~~~~~~~~~~iPvV~~~~~~~-------~~~~~V~~D~~~~g~~~~~~l~~~~~g~~~i~~i~~~~~~~~~~~R~~gf 147 (291)
T 3l49_A 75 LNPWLQKINDAGIPLFTVDTATP-------HAINNTTSNNYSIGAELALQMVADLGGKGNVLVFNGFYSVPVCKIRYDQM 147 (291)
T ss_dssp HHHHHHHHHHTTCCEEEESCCCT-------TCSEEEEECHHHHHHHHHHHHHHHHTTCEEEEEECSCTTSHHHHHHHHHH
T ss_pred hHHHHHHHHHCCCcEEEecCCCC-------CcCceEecChHHHHHHHHHHHHHHcCCCceEEEEeCCCCCchHHHHHHHH
Confidence 56666777788999998754321 12345677888889999998887 8999999997432 2334557889
Q ss_pred HHHHhhc-ceEEEEEeecCCCCCCChhhHHHHHHHHhcC-----CceEEEEEeChhhHHHHHHHHHHcCCC
Q 002309 185 NDKLAER-RCRISYKSGIPPESGVNTGYVMDLLVKVALM-----ESRVIVLHVSPSLGFQVFSVAKYLGMM 249 (938)
Q Consensus 185 ~~~l~~~-g~~v~~~~~~~~~~~~~~~d~~~~l~~lk~~-----~~~viv~~~~~~~~~~~l~~a~~~g~~ 249 (938)
.+++++. |+++.....+... ..+.+.....+.++-+. ++++|+ +.+...+..+++++++.|+.
T Consensus 148 ~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~ai~-~~~d~~a~g~~~al~~~g~~ 216 (291)
T 3l49_A 148 KYVLEAFPDVKIIEPELRDVI-PNTIQSAYSNVTDMLTKYPNEGDVGAIW-ACWDVPMIGATQALQAAGRT 216 (291)
T ss_dssp HHHHHTCTTEEECSSCBCCCS-SSHHHHHHHHHHHHHHHCCSTTSCCEEE-ESSHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHCCCCEEEeeeccCCC-CCCHHHHHHHHHHHHHhCCCcCCcCEEE-ECCCchHHHHHHHHHHcCCC
Confidence 9999988 6775433322221 01223334445554333 466664 45666778899999999985
No 91
>2x7x_A Sensor protein; transferase, sensor histidine kinase; HET: FRU; 2.64A {Bacteroides thetaiotaomicron}
Probab=98.01 E-value=0.00025 Score=76.23 Aligned_cols=200 Identities=8% Similarity=0.007 Sum_probs=124.3
Q ss_pred eeEEEEEEeeCCCcchhHHHHHHHHHHHHHhcCCCCCCCCEEEEEEccCCCChHHHHHHHHHHHhcCcEEEEcCCChh-H
Q 002309 30 AVVNVGALFTLDSTIGRVAKIAIEEAVKDVNSNSSILHGTKLNITMQSSNCSGFIGMVEALRFMETDIVAIIGPQCST-V 108 (938)
Q Consensus 30 ~~i~IG~i~~~~~~~g~~~~~a~~~Av~~iN~~~~il~g~~l~~~~~D~~~~~~~a~~~a~~li~~~V~aviGp~~s~-~ 108 (938)
.+.+||++.|.+.++-.....+++.+.+ +.+ |+.+ .+.++..++.........++.++|.+||...... .
T Consensus 5 ~~~~Igvi~~~~~~~~~~~~~gi~~~a~---~~~----g~~l--~i~~~~~~~~~~~~~i~~l~~~~vdgiIi~~~~~~~ 75 (325)
T 2x7x_A 5 PHFRIGVAQCSDDSWRHKMNDEILREAM---FYN----GVSV--EIRSAGDDNSKQAEDVHYFMDEGVDLLIISANEAAP 75 (325)
T ss_dssp -CCEEEEEESCCSHHHHHHHHHHHHHHT---TSS----SCEE--EEEECTTCHHHHHHHHHHHHHTTCSEEEECCSSHHH
T ss_pred CCeEEEEEecCCCHHHHHHHHHHHHHHH---HcC----CcEE--EEeCCCCCHHHHHHHHHHHHHcCCCEEEEeCCCHHH
Confidence 4578999998733332233444444432 221 4544 4556677777777777788888998887644333 2
Q ss_pred HHHHHHhhccCCccEEEcccCCCCCCCCCCCceEEecCCchHHHHHHHHHHHhc--CCcEEEEEEEc--CccccchHHHH
Q 002309 109 AHIVSYVSNELQVPLLSFGVTDPTLSSLQYPFFVRTTQSDSYQMTAVAEMVSYY--GWNAVSVIFVD--NEYGRNGVSAL 184 (938)
Q Consensus 109 ~~~va~~~~~~~iP~Is~~~~~~~l~~~~~p~~~r~~ps~~~~~~ai~~~l~~~--~w~~vaii~~d--~~~g~~~~~~l 184 (938)
.......+...++|+|......+. .+.+..+.+++...+..+++++... |.++|++|..+ ........+.+
T Consensus 76 ~~~~~~~~~~~~iPvV~~~~~~~~-----~~~~~~V~~D~~~~g~~a~~~L~~~~~G~~~I~~i~~~~~~~~~~~R~~Gf 150 (325)
T 2x7x_A 76 MTPIVEEAYQKGIPVILVDRKILS-----DKYTAYIGADNYEIGRSVGNYIASSLKGKGNIVELTGLSGSTPAMERHQGF 150 (325)
T ss_dssp HHHHHHHHHHTTCCEEEESSCCSS-----SCSSEEEEECHHHHHHHHHHHHHHHTTTEEEEEEEESCTTSHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCeEEEeCCCCCC-----cceeEEEecCHHHHHHHHHHHHHHHcCCCceEEEEECCCCCccHHHHHHHH
Confidence 233344556679999987543211 1234456678888888888887764 99999999854 23445667889
Q ss_pred HHHHhhc-ceEEEEEeecCCCCCCChhhHHHHHHHHhc--CCceEEEEEeChhhHHHHHHHHHHcCC
Q 002309 185 NDKLAER-RCRISYKSGIPPESGVNTGYVMDLLVKVAL--MESRVIVLHVSPSLGFQVFSVAKYLGM 248 (938)
Q Consensus 185 ~~~l~~~-g~~v~~~~~~~~~~~~~~~d~~~~l~~lk~--~~~~viv~~~~~~~~~~~l~~a~~~g~ 248 (938)
.+++++. |+++.... .. . .+..+....+.++.. ..+++|+ +.+...+..+++++++.|+
T Consensus 151 ~~al~~~pg~~~~~~~-~~-~--~~~~~~~~~~~~ll~~~~~~~aI~-~~nd~~A~g~~~al~~~Gi 212 (325)
T 2x7x_A 151 MAAISKFPDIKLIDKA-DA-A--WERGPAEIEMDSMLRRHPKIDAVY-AHNDRIAPGAYQAAKMAGR 212 (325)
T ss_dssp HHHHHTCTEEEEEEEE-EC-T--TSHHHHHHHHHHHHHHCSCCCEEE-ESSTTHHHHHHHHHHHTTC
T ss_pred HHHHHhCCCCEEEeee-cC-C--CCHHHHHHHHHHHHHhCCCCCEEE-ECCCchHHHHHHHHHHcCC
Confidence 9999998 88765322 11 1 123344444555433 3467665 4455567788999999996
No 92
>2fn9_A Ribose ABC transporter, periplasmic ribose-bindin; RBP, ribose binding protein, periplasmic binding protein, thermophilic proteins; 1.40A {Thermotoga maritima} PDB: 2fn8_A*
Probab=98.01 E-value=0.00024 Score=74.80 Aligned_cols=197 Identities=8% Similarity=0.013 Sum_probs=124.9
Q ss_pred EEEEEEeeCC-CcchhHHHHHHHHHHHHHhcCCCCCCCCEEEEEEccCCCChHHHHHHHHHHHhcCcEEEEcC-CChhHH
Q 002309 32 VNVGALFTLD-STIGRVAKIAIEEAVKDVNSNSSILHGTKLNITMQSSNCSGFIGMVEALRFMETDIVAIIGP-QCSTVA 109 (938)
Q Consensus 32 i~IG~i~~~~-~~~g~~~~~a~~~Av~~iN~~~~il~g~~l~~~~~D~~~~~~~a~~~a~~li~~~V~aviGp-~~s~~~ 109 (938)
.+||++.|.. ..+......+++.+.++. |+++ .+.++..++....+....++.++|.+||.. ......
T Consensus 3 ~~Ig~i~~~~~~~~~~~~~~gi~~~~~~~--------g~~~--~~~~~~~~~~~~~~~~~~l~~~~vdgiI~~~~~~~~~ 72 (290)
T 2fn9_A 3 GKMAIVISTLNNPWFVVLAETAKQRAEQL--------GYEA--TIFDSQNDTAKESAHFDAIIAAGYDAIIFNPTDADGS 72 (290)
T ss_dssp CEEEEEESCSSSHHHHHHHHHHHHHHHHT--------TCEE--EEEECTTCHHHHHHHHHHHHHTTCSEEEECCSCTTTT
T ss_pred eEEEEEeCCCCChHHHHHHHHHHHHHHHc--------CCEE--EEeCCCCCHHHHHHHHHHHHHcCCCEEEEecCChHHH
Confidence 4799999864 444455667777666652 4544 456777787777777778888888888753 333322
Q ss_pred HHHHHhhccCCccEEEcccCCCCCCCCCCCceEE-ecCCchHHHHHHHHHHHhc------CCcE--EEEEEEc--Ccccc
Q 002309 110 HIVSYVSNELQVPLLSFGVTDPTLSSLQYPFFVR-TTQSDSYQMTAVAEMVSYY------GWNA--VSVIFVD--NEYGR 178 (938)
Q Consensus 110 ~~va~~~~~~~iP~Is~~~~~~~l~~~~~p~~~r-~~ps~~~~~~ai~~~l~~~------~w~~--vaii~~d--~~~g~ 178 (938)
......+...++|+|......+. . +.... +..++...+..+++++... |.++ ++++... .....
T Consensus 73 ~~~~~~~~~~~iPvV~~~~~~~~---~--~~~~~~V~~D~~~~~~~~~~~L~~~~g~~~~G~r~i~i~~l~g~~~~~~~~ 147 (290)
T 2fn9_A 73 IANVKRAKEAGIPVFCVDRGINA---R--GLAVAQIYSDNYYGGVLAGEYFVKFLKEKYPDAKEIPYAELLGILSAQPTW 147 (290)
T ss_dssp HHHHHHHHHTTCCEEEESSCCSC---S--SSSSEEEEECHHHHHHHHHHHHHHHHHHHCSSCSCEEEEEEECCTTCHHHH
T ss_pred HHHHHHHHHCCCeEEEEecCCCC---C--CceEEEEeCCHHHHHHHHHHHHHHHhcccCCcccceeEEEEEcCCCCchHH
Confidence 23334455679999987543221 1 12223 6677788888888887776 7889 6666643 23455
Q ss_pred chHHHHHHHHhhc-ceEEEEEeecCCCCCCChhhHHHHHHHHhc--CCceEEEEEeChhhHHHHHHHHHHcCC
Q 002309 179 NGVSALNDKLAER-RCRISYKSGIPPESGVNTGYVMDLLVKVAL--MESRVIVLHVSPSLGFQVFSVAKYLGM 248 (938)
Q Consensus 179 ~~~~~l~~~l~~~-g~~v~~~~~~~~~~~~~~~d~~~~l~~lk~--~~~~viv~~~~~~~~~~~l~~a~~~g~ 248 (938)
...+.+.+++++. |+++.... .. . .+..+....++++.+ .++++|+. .+...+..+++++++.|+
T Consensus 148 ~R~~gf~~~l~~~~g~~~~~~~-~~-~--~~~~~~~~~~~~ll~~~~~~~ai~~-~~d~~a~g~~~al~~~g~ 215 (290)
T 2fn9_A 148 DRSNGFHSVVDQYPEFKMVAQQ-SA-E--FDRDTAYKVTEQILQAHPEIKAIWC-GNDAMALGAMKACEAAGR 215 (290)
T ss_dssp HHHHHHHHHHTTSTTEEEEEEE-EC-T--TCHHHHHHHHHHHHHHCTTCCEEEE-SSHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHhCCCCEEEEec-cC-C--CCHHHHHHHHHHHHHhCCCCcEEEE-CCchHHHHHHHHHHHCCC
Confidence 6678899999998 88765322 11 1 123344445555433 34676654 455667889999999997
No 93
>3o1i_D Periplasmic protein TORT; ligand free, two component sensor, periplasmic binding prote signaling protein; HET: PE4; 2.80A {Vibrio parahaemolyticus} PDB: 3o1h_B* 3o1j_C
Probab=97.99 E-value=0.00014 Score=77.30 Aligned_cols=205 Identities=6% Similarity=-0.089 Sum_probs=130.4
Q ss_pred eeEEEEEEeeCC-CcchhHHHHHHHHHHHHHhcCCCCCCCCEEEEEEccCCCChHHHHHHHHHHHhcCcEEEE-cCCChh
Q 002309 30 AVVNVGALFTLD-STIGRVAKIAIEEAVKDVNSNSSILHGTKLNITMQSSNCSGFIGMVEALRFMETDIVAII-GPQCST 107 (938)
Q Consensus 30 ~~i~IG~i~~~~-~~~g~~~~~a~~~Av~~iN~~~~il~g~~l~~~~~D~~~~~~~a~~~a~~li~~~V~avi-Gp~~s~ 107 (938)
.+.+||+++|.. ..+-.....+++-+.++. |+++.+...+...++....+....++.+++.+|| .|....
T Consensus 4 ~~~~Igvi~~~~~~~~~~~~~~g~~~~a~~~--------g~~~~~~~~~~~~~~~~~~~~~~~~~~~~vdgiii~~~~~~ 75 (304)
T 3o1i_D 4 SDEKICAIYPHLKDSYWLSVNYGMVSEAEKQ--------GVNLRVLEAGGYPNKSRQEQQLALCTQWGANAIILGTVDPH 75 (304)
T ss_dssp -CCEEEEEESCSCSHHHHHHHHHHHHHHHHH--------TCEEEEEECSSTTCHHHHHHHHHHHHHHTCSEEEECCSSTT
T ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHHHHHHc--------CCeEEEEcCCCCCCHHHHHHHHHHHHHcCCCEEEEeCCChh
Confidence 467899999865 333344556666665554 4555554333333877777788888888888776 444444
Q ss_pred HHHHHHHhhccCCccEEEcccCCCCCCCCCCCceEEecCCchHHHHHHHHHHHhcC-----CcEEEEEEEc--Cccccch
Q 002309 108 VAHIVSYVSNELQVPLLSFGVTDPTLSSLQYPFFVRTTQSDSYQMTAVAEMVSYYG-----WNAVSVIFVD--NEYGRNG 180 (938)
Q Consensus 108 ~~~~va~~~~~~~iP~Is~~~~~~~l~~~~~p~~~r~~ps~~~~~~ai~~~l~~~~-----w~~vaii~~d--~~~g~~~ 180 (938)
........+. .++|+|......+.......+.+..+.+++...+..+++++...+ -++|+++... .......
T Consensus 76 ~~~~~~~~~~-~~iPvV~~~~~~~~~~~~~~~~~~~V~~D~~~~g~~a~~~l~~~g~~~~~~~~i~~i~~~~~~~~~~~R 154 (304)
T 3o1i_D 76 AYEHNLKSWV-GNTPVFATVNQLDLDEEQSTLLKGEVGVDWYWMGYEAGKYLAERHPKGSGKTNIALLLGPRTRGGTKPV 154 (304)
T ss_dssp SSTTTHHHHT-TTSCEEECSSCCCCCTTTGGGEEEECCCCHHHHHHHHHHHHHTTSBTTTCCEEEEEECCCC-----CHH
T ss_pred HHHHHHHHHc-CCCCEEEecCCCcccccCCCceEEEEecCHHHHHHHHHHHHHHhcccCCCCCEEEEEECCCCcchHHHH
Confidence 2223334455 899999874433211112234566778888888999999998888 8899999743 2345566
Q ss_pred HHHHHHHHhhcceEEEEEeecCCCCCCChhhHHHHHHHHh-cCCceEEEEEeChhhHHHHHHHHHHcCCC
Q 002309 181 VSALNDKLAERRCRISYKSGIPPESGVNTGYVMDLLVKVA-LMESRVIVLHVSPSLGFQVFSVAKYLGMM 249 (938)
Q Consensus 181 ~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~lk-~~~~~viv~~~~~~~~~~~l~~a~~~g~~ 249 (938)
.+.+.+++++.|+++.... ... .+.......+.++- ...+++ | +++...+..+++++++.|+.
T Consensus 155 ~~gf~~~l~~~~~~~~~~~--~~~--~~~~~~~~~~~~~l~~~~~~a-i-~~~d~~a~g~~~al~~~g~~ 218 (304)
T 3o1i_D 155 TTGFYEAIKNSDIHIVDSF--WAD--NDKELQRNLVQRVIDMGNIDY-I-VGSAVAIEAAISELRSADKT 218 (304)
T ss_dssp HHHHHHTTTTBTEEEEECC--CCC--SCHHHHHHHHHHHHHHSCCSE-E-EECHHHHHHHHHHHTTTTCG
T ss_pred HHHHHHHHhcCCCEEEEee--cCC--CcHHHHHHHHHHHHcCCCCCE-E-EecCcchHHHHHHHHhcCCC
Confidence 8899999999998876532 222 22333334444332 345677 4 45667788899999999975
No 94
>2fvy_A D-galactose-binding periplasmic protein; periplasmic binding protien, hinge, chemotaxis, transport,; HET: BGC; 0.92A {Escherichia coli} SCOP: c.93.1.1 PDB: 1glg_A* 2fw0_A* 2gbp_A* 2qw1_A* 2hph_A* 2ipn_A* 2ipm_A* 2ipl_A* 1gca_A* 1gcg_A 3ga5_A* 3gbp_A*
Probab=97.95 E-value=0.00038 Score=74.01 Aligned_cols=204 Identities=10% Similarity=0.021 Sum_probs=127.3
Q ss_pred EEEEEEeeCC-CcchhHHHHHHHHHHHHHhcCCCCCCCCEEEEEEccCCCChHHHHHHHHHHHhcCcEEEEc-CCChhHH
Q 002309 32 VNVGALFTLD-STIGRVAKIAIEEAVKDVNSNSSILHGTKLNITMQSSNCSGFIGMVEALRFMETDIVAIIG-PQCSTVA 109 (938)
Q Consensus 32 i~IG~i~~~~-~~~g~~~~~a~~~Av~~iN~~~~il~g~~l~~~~~D~~~~~~~a~~~a~~li~~~V~aviG-p~~s~~~ 109 (938)
-+||++.|.. ..+-.....+++.+.++. |+ +++.+.++..++....+....++.++|.+||- |......
T Consensus 3 ~~Igvi~~~~~~~~~~~~~~gi~~~a~~~--------g~-~~~~~~~~~~~~~~~~~~~~~~~~~~vdgiii~~~~~~~~ 73 (309)
T 2fvy_A 3 TRIGVTIYKYDDNFMSVVRKAIEQDAKAA--------PD-VQLLMNDSQNDQSKQNDQIDVLLAKGVKALAINLVDPAAA 73 (309)
T ss_dssp EEEEEEESCTTSHHHHHHHHHHHHHHHTC--------TT-EEEEEEECTTCHHHHHHHHHHHHHTTCSEEEECCSSGGGH
T ss_pred cEEEEEeccCCcHHHHHHHHHHHHHHHhc--------CC-eEEEEecCCCCHHHHHHHHHHHHHcCCCEEEEeCCCcchh
Confidence 5799999854 333334455555444432 33 23455677777777777777778888888775 3333333
Q ss_pred HHHHHhhccCCccEEEcccCCCCCCCCCCCceEEecCCchHHHHHHHHHHHh------------cCCcEEEEEEEc--Cc
Q 002309 110 HIVSYVSNELQVPLLSFGVTDPTLSSLQYPFFVRTTQSDSYQMTAVAEMVSY------------YGWNAVSVIFVD--NE 175 (938)
Q Consensus 110 ~~va~~~~~~~iP~Is~~~~~~~l~~~~~p~~~r~~ps~~~~~~ai~~~l~~------------~~w~~vaii~~d--~~ 175 (938)
......+...++|+|......+......++.+..+..++...+..+++++.. .|-++|++|... ..
T Consensus 74 ~~~~~~~~~~~iPvV~~~~~~~~~~~~~~~~~~~V~~d~~~~g~~~~~~L~~~~~~~~~~~~~g~g~~~i~~i~~~~~~~ 153 (309)
T 2fvy_A 74 GTVIEKARGQNVPVVFFNKEPSRKALDSYDKAYYVGTDSKESGIIQGDLIAKHWAANQGWDLNKDGQIQFVLLKGEPGHP 153 (309)
T ss_dssp HHHHHHHHTTTCCEEEESSCCCHHHHHTCTTEEEEECCHHHHHHHHHHHHHHHHHHCGGGCTTCSSSEEEEEEECSTTCH
T ss_pred HHHHHHHHHCCCcEEEecCCCCcccccccCccEEEecCHHHHHHHHHHHHHHHHhhcccccccCCCceEEEEEEcCCCCc
Confidence 3444556678999998754321100012345667888888888888888766 688899999853 33
Q ss_pred cccchHHHHHHHHhhcceEEEEEeecCCCCCCChhhHHHHHHHHhcC----CceEEEEEeChhhHHHHHHHHHHcC
Q 002309 176 YGRNGVSALNDKLAERRCRISYKSGIPPESGVNTGYVMDLLVKVALM----ESRVIVLHVSPSLGFQVFSVAKYLG 247 (938)
Q Consensus 176 ~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~lk~~----~~~viv~~~~~~~~~~~l~~a~~~g 247 (938)
......+.+.+++++.|+.+.....+... .+..+....++++-+. ++++|+. .+...+..+++++++.|
T Consensus 154 ~~~~R~~gf~~~l~~~g~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~ai~~-~~d~~a~g~~~al~~~g 226 (309)
T 2fvy_A 154 DAEARTTYVIKELNDKGIKTEQLQLDTAM--WDTAQAKDKMDAWLSGPNANKIEVVIA-NNDAMAMGAVEALKAHN 226 (309)
T ss_dssp HHHHHHHHHHHHHHHTTCCEEEEEEEECT--TCHHHHHHHHHHHHTSTTGGGCCEEEE-SSHHHHHHHHHHHHHTT
T ss_pred cHHHHHHHHHHHHHhcCCceEEEEEecCC--CCHHHHHHHHHHHHHhCCCCCccEEEE-CCchhHHHHHHHHHHcC
Confidence 45566788999999998765432222211 2244444555555443 4666554 45566778999999988
No 95
>3c3k_A Alanine racemase; structural genomics, protein structure initiative, NEW YORK research center for structural genomics, nysgxrc; 1.99A {Actinobacillus succinogenes}
Probab=97.95 E-value=0.0004 Score=72.93 Aligned_cols=203 Identities=12% Similarity=0.037 Sum_probs=127.2
Q ss_pred eeEEEEEEeeCC-CcchhHHHHHHHHHHHHHhcCCCCCCCCEEEEEEccCCCChHHHHHHHHHHHhcCcEEEEcCCChhH
Q 002309 30 AVVNVGALFTLD-STIGRVAKIAIEEAVKDVNSNSSILHGTKLNITMQSSNCSGFIGMVEALRFMETDIVAIIGPQCSTV 108 (938)
Q Consensus 30 ~~i~IG~i~~~~-~~~g~~~~~a~~~Av~~iN~~~~il~g~~l~~~~~D~~~~~~~a~~~a~~li~~~V~aviGp~~s~~ 108 (938)
.+.+||++.|.. .++......+++.+.++. |+++.+ .++..++....+....++.++|.+||.......
T Consensus 7 ~~~~Igvi~~~~~~~~~~~~~~gi~~~~~~~--------g~~~~~--~~~~~~~~~~~~~~~~l~~~~vdgiI~~~~~~~ 76 (285)
T 3c3k_A 7 KTGMLLVMVSNIANPFCAAVVKGIEKTAEKN--------GYRILL--CNTESDLARSRSCLTLLSGKMVDGVITMDALSE 76 (285)
T ss_dssp CCCEEEEEESCTTSHHHHHHHHHHHHHHHHT--------TCEEEE--EECTTCHHHHHHHTHHHHTTCCSEEEECCCGGG
T ss_pred CCCEEEEEeCCCCCchHHHHHHHHHHHHHHc--------CCEEEE--EeCCCCHHHHHHHHHHHHhCCCCEEEEeCCCCC
Confidence 456899999853 444445556666555542 455544 456667666666666777778988876433322
Q ss_pred HHHHHHhhccCCccEEEcccCCCCCCCCCCCceEEecCCchHHHHHHHHHHHhcCCcEEEEEEEcC--ccccchHHHHHH
Q 002309 109 AHIVSYVSNELQVPLLSFGVTDPTLSSLQYPFFVRTTQSDSYQMTAVAEMVSYYGWNAVSVIFVDN--EYGRNGVSALND 186 (938)
Q Consensus 109 ~~~va~~~~~~~iP~Is~~~~~~~l~~~~~p~~~r~~ps~~~~~~ai~~~l~~~~w~~vaii~~d~--~~g~~~~~~l~~ 186 (938)
...+.. +. .++|+|......+ + +.+..+..++...+..+++++...|.++|++|.... .........+.+
T Consensus 77 ~~~~~~-l~-~~iPvV~~~~~~~---~---~~~~~V~~D~~~~g~~a~~~L~~~G~~~I~~i~~~~~~~~~~~R~~gf~~ 148 (285)
T 3c3k_A 77 LPELQN-II-GAFPWVQCAEYDP---L---STVSSVSIDDVAASEYVVDQLVKSGKKRIALINHDLAYQYAQHRESGYLN 148 (285)
T ss_dssp HHHHHH-HH-TTSSEEEESSCCT---T---SSSCEEECCHHHHHHHHHHHHHHTTCCCEEEEECCTTSHHHHHHHHHHHH
T ss_pred hHHHHH-Hh-cCCCEEEEccccC---C---CCCCEEEEChHHHHHHHHHHHHHcCCCeEEEEeCCCccccHHHHHHHHHH
Confidence 233333 34 8999998754322 1 223346677777788888988888999999998543 344566788999
Q ss_pred HHhhcceEEE-EEeecCCCCCCChhhHHHHHHH--HhcC--CceEEEEEeChhhHHHHHHHHHHcCCCCCCeEEEE
Q 002309 187 KLAERRCRIS-YKSGIPPESGVNTGYVMDLLVK--VALM--ESRVIVLHVSPSLGFQVFSVAKYLGMMGNGYVWIA 257 (938)
Q Consensus 187 ~l~~~g~~v~-~~~~~~~~~~~~~~d~~~~l~~--lk~~--~~~viv~~~~~~~~~~~l~~a~~~g~~~~~~~wi~ 257 (938)
++++.|+.+. ....+ +..+....+.+ +-+. ++++|+. .+...+..+++++++.|+..++-+-+.
T Consensus 149 ~l~~~g~~~~~~~~~~------~~~~~~~~~~~~~~l~~~~~~~ai~~-~~d~~A~g~~~al~~~g~~vP~di~vv 217 (285)
T 3c3k_A 149 RLKFHGLDYSRISYAE------NLDYMAGKLATFSLLKSAVKPDAIFA-ISDVLAAGAIQALTESGLSIPQDVAVV 217 (285)
T ss_dssp HHHHHTCCCCEEEECS------SSSHHHHHHHHHHHHSSSSCCSEEEE-SSHHHHHHHHHHHHHTTCCTTTTCEEE
T ss_pred HHHHcCCCceEeecCC------ChHHHHHHHHHHHHHcCCCCCeEEEE-CCHHHHHHHHHHHHHcCCCCCCceEEE
Confidence 9999887643 11111 12333445555 4433 4666554 455667889999999998655434343
No 96
>2h0a_A TTHA0807, transcriptional regulator; repressor, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.80A {Thermus thermophilus}
Probab=97.94 E-value=5.5e-05 Score=79.20 Aligned_cols=203 Identities=9% Similarity=-0.015 Sum_probs=115.7
Q ss_pred EEEEEeeCC-CcchhHHHHHHHHHHHHHhcCCCCCCCCEEEEEEccCCCChHHHHHHHHHHHhcCcEEEEcCCChhHHHH
Q 002309 33 NVGALFTLD-STIGRVAKIAIEEAVKDVNSNSSILHGTKLNITMQSSNCSGFIGMVEALRFMETDIVAIIGPQCSTVAHI 111 (938)
Q Consensus 33 ~IG~i~~~~-~~~g~~~~~a~~~Av~~iN~~~~il~g~~l~~~~~D~~~~~~~a~~~a~~li~~~V~aviGp~~s~~~~~ 111 (938)
+||+++|.- .++-.....+++-+.++. |+++ .+.++..++....+....++.++|.+||........ .
T Consensus 1 ~Igvi~~~~~~~~~~~~~~gi~~~~~~~--------g~~~--~~~~~~~~~~~~~~~~~~l~~~~vdgiI~~~~~~~~-~ 69 (276)
T 2h0a_A 1 TVSVLLPFVATEFYRRLVEGIEGVLLEQ--------RYDL--ALFPILSLARLKRYLENTTLAYLTDGLILASYDLTE-R 69 (276)
T ss_dssp CEEEEECCSCCHHHHHHHHHHHHHHGGG--------TCEE--EECCCCSCCCCC---------CCCSEEEEESCCCC---
T ss_pred CEEEEECCCCCHHHHHHHHHHHHHHHHC--------CCEE--EEEeCCCchhhHHHHHHHHHhCCCCEEEEecCCCCH-H
Confidence 489999853 333333445554444332 4444 345555555444445556667788877643222222 3
Q ss_pred HHHhhccCCccEEEcccCCCCCCCCCCCceEEecCCchHHHHHHHHHHHhcCCcEEEEEEEcC-c-----ccc-chHHHH
Q 002309 112 VSYVSNELQVPLLSFGVTDPTLSSLQYPFFVRTTQSDSYQMTAVAEMVSYYGWNAVSVIFVDN-E-----YGR-NGVSAL 184 (938)
Q Consensus 112 va~~~~~~~iP~Is~~~~~~~l~~~~~p~~~r~~ps~~~~~~ai~~~l~~~~w~~vaii~~d~-~-----~g~-~~~~~l 184 (938)
....+...++|+|......+ + +..+..++...+..+++++...|.+++++|..+. . ... ...+.+
T Consensus 70 ~~~~~~~~~iPvV~~~~~~~-------~-~~~V~~d~~~~~~~a~~~L~~~G~~~i~~i~~~~~~~~~~~~~~~~R~~gf 141 (276)
T 2h0a_A 70 FEEGRLPTERPVVLVDAQNP-------R-YDSVYLDNRLGGRLAGAYLARFPGPIFAIAVEEEPDRAFRRTVFAERMAGF 141 (276)
T ss_dssp ----CCSCSSCEEEESSCCT-------T-SEEEEECSHHHHHHHHHHHTTSSSCEEEEEECCSCCC---CCHHHHHHHHH
T ss_pred HHHHHhhcCCCEEEEeccCC-------C-CCEEEEccHHHHHHHHHHHHHcCCCeEEEEecCcccccccchhHHHHHHHH
Confidence 33455668999998744321 1 4456678888889999998888999999998653 2 445 667889
Q ss_pred HHHHhhcceEEEEEeecCCCCCCChhhHHHHHHHHhcC--CceEEEEEeChhhHHHHHHHHHHcCCCCCCeEEEE
Q 002309 185 NDKLAERRCRISYKSGIPPESGVNTGYVMDLLVKVALM--ESRVIVLHVSPSLGFQVFSVAKYLGMMGNGYVWIA 257 (938)
Q Consensus 185 ~~~l~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~lk~~--~~~viv~~~~~~~~~~~l~~a~~~g~~~~~~~wi~ 257 (938)
.+++++.|+.+.....+... .+..+....+.++-+. .+++|+ +.+...+..+++++++.|+..++-+.+.
T Consensus 142 ~~~l~~~g~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~ai~-~~~d~~a~g~~~al~~~g~~vP~di~vv 213 (276)
T 2h0a_A 142 QEALKEAGRPFSPDRLYITR--HSQEGGRLALRHFLEKASPPLNVF-AGADQVALGVLEEAVRLGLTPGRDVRVL 213 (276)
T ss_dssp HHHHHHTTCCCCGGGEEEEC--SSHHHHHHHHHHHHTTCCSSEEEE-CSSHHHHHHHHHHHHTTSCTTTTSEEEE
T ss_pred HHHHHHcCCCCChHHeeecC--CChHHHHHHHHHHHhCCCCCCEEE-ECCcHHHHHHHHHHHHcCCCCCCCeEEE
Confidence 99999998764311011111 1234444555555443 366665 5566677889999999998655444444
No 97
>3g1w_A Sugar ABC transporter; sugar-binding protein, bacillus halod target 11229F, transport protein, structural genomics; 2.02A {Bacillus halodurans c-125}
Probab=97.93 E-value=0.00073 Score=71.70 Aligned_cols=210 Identities=9% Similarity=-0.030 Sum_probs=132.7
Q ss_pred EEEEEEeeCC-CcchhHHHHHHHHHHHHHhcCCCCCCCCEEEEEEccCCCChHHHHHHHHHHHhcCcEEEE-cCCChhHH
Q 002309 32 VNVGALFTLD-STIGRVAKIAIEEAVKDVNSNSSILHGTKLNITMQSSNCSGFIGMVEALRFMETDIVAII-GPQCSTVA 109 (938)
Q Consensus 32 i~IG~i~~~~-~~~g~~~~~a~~~Av~~iN~~~~il~g~~l~~~~~D~~~~~~~a~~~a~~li~~~V~avi-Gp~~s~~~ 109 (938)
-+||++.|.. ..+-.....+++.+.++. |+++.+. .++..++..-.+....++.+++.+|| .|......
T Consensus 5 ~~I~~i~~~~~~~~~~~~~~gi~~~a~~~--------g~~~~~~-~~~~~~~~~~~~~i~~l~~~~vdgiIi~~~~~~~~ 75 (305)
T 3g1w_A 5 ETYMMITFQSGMDYWKRCLKGFEDAAQAL--------NVTVEYR-GAAQYDIQEQITVLEQAIAKNPAGIAISAIDPVEL 75 (305)
T ss_dssp CEEEEEESSTTSTHHHHHHHHHHHHHHHH--------TCEEEEE-ECSSSCHHHHHHHHHHHHHHCCSEEEECCSSTTTT
T ss_pred ceEEEEEccCCChHHHHHHHHHHHHHHHc--------CCEEEEe-CCCcCCHHHHHHHHHHHHHhCCCEEEEcCCCHHHH
Confidence 5788888875 333345566777776664 4555442 46677887777777788888888776 34444333
Q ss_pred HHHHHhhccCCccEEEcccCCCCCCCCCCCceEEecCCchHHHHHHHHHHHhc--CCcEEEEEEEcC-ccccchHHHHHH
Q 002309 110 HIVSYVSNELQVPLLSFGVTDPTLSSLQYPFFVRTTQSDSYQMTAVAEMVSYY--GWNAVSVIFVDN-EYGRNGVSALND 186 (938)
Q Consensus 110 ~~va~~~~~~~iP~Is~~~~~~~l~~~~~p~~~r~~ps~~~~~~ai~~~l~~~--~w~~vaii~~d~-~~g~~~~~~l~~ 186 (938)
......+...++|+|......+. .+.+..+.+++...+..+++++... |-++|+++.... .......+.+.+
T Consensus 76 ~~~~~~~~~~~iPvV~~~~~~~~-----~~~~~~V~~d~~~~g~~~~~~l~~~~~g~~~i~~i~~~~~~~~~~R~~gf~~ 150 (305)
T 3g1w_A 76 TDTINKAVDAGIPIVLFDSGAPD-----SHAHSFLGTNNYNAGMNAAYKMAELLDGEGEVAVITLPNQLNHQERTTGFKE 150 (305)
T ss_dssp HHHHHHHHHTTCCEEEESSCCTT-----SCCSCEEECCHHHHHHHHHHHHHHHTTTCEEEEEEECTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCcEEEECCCCCC-----CceeEEECcCHHHHHHHHHHHHHHHhCCCcEEEEEeCCCcccHHHHHHHHHH
Confidence 34445566679999987543321 1223456788888899999988877 999999998543 233455678889
Q ss_pred HHhhcceEEEEEeecCCCCCCChhhHHHHHHHHhcC--CceEEEEEeChhhHHHHHHHHHHcCCCCCCeEEEEeC
Q 002309 187 KLAERRCRISYKSGIPPESGVNTGYVMDLLVKVALM--ESRVIVLHVSPSLGFQVFSVAKYLGMMGNGYVWIATD 259 (938)
Q Consensus 187 ~l~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~lk~~--~~~viv~~~~~~~~~~~l~~a~~~g~~~~~~~wi~~~ 259 (938)
++++.|..+.....+... .+.......+.++-+. ++++|+ +.+...+..+++++++.|+. .....++.|
T Consensus 151 ~l~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~ai~-~~~d~~a~g~~~al~~~g~~-~di~vig~d 221 (305)
T 3g1w_A 151 TLEAEFPAIEVIAVEDGR--GDSLHSRRVAHQLLEDYPNLAGIF-ATEANGGVGVGDAVRLESRA-GEIQIISFD 221 (305)
T ss_dssp HHHHHCTTEEEEEEEECT--TCHHHHHHHHHHHHHHCTTEEEEE-ESSHHHHHHHHHHHHHTTCT-TTSEEEEES
T ss_pred HHHhhCCCCEEEEEecCC--CCHHHHHHHHHHHHHhCCCceEEE-ECCCcchhhHHHHHHhcCCC-CCeEEEEeC
Confidence 998876544332222222 2244444555555433 344433 45556778899999999986 444445443
No 98
>2vk2_A YTFQ, ABC transporter periplasmic-binding protein YTFQ; transport protein, galactofuranose; HET: GZL; 1.20A {Escherichia coli}
Probab=97.91 E-value=0.00041 Score=73.73 Aligned_cols=205 Identities=8% Similarity=0.005 Sum_probs=126.5
Q ss_pred eEEEEEEeeCC-CcchhHHHHHHHHHHHHHhcCCCCCCCCEEEEEEccCCCChHHHHHHHHHHHhcCcEEEEcCCCh-hH
Q 002309 31 VVNVGALFTLD-STIGRVAKIAIEEAVKDVNSNSSILHGTKLNITMQSSNCSGFIGMVEALRFMETDIVAIIGPQCS-TV 108 (938)
Q Consensus 31 ~i~IG~i~~~~-~~~g~~~~~a~~~Av~~iN~~~~il~g~~l~~~~~D~~~~~~~a~~~a~~li~~~V~aviGp~~s-~~ 108 (938)
+++||++.|.. ..+......+++.+.++. |+.+ .+.++..++....+....++.++|.+||..... ..
T Consensus 2 ~~~Ig~i~~~~~~~~~~~~~~gi~~~a~~~--------g~~l--~~~~~~~~~~~~~~~i~~l~~~~vdgiIi~~~~~~~ 71 (306)
T 2vk2_A 2 PLTVGFSQVGSESGWRAAETNVAKSEAEKR--------GITL--KIADGQQKQENQIKAVRSFVAQGVDAIFIAPVVATG 71 (306)
T ss_dssp CCEEEEEECCCCSHHHHHHHHHHHHHHHHH--------TCEE--EEEECTTCHHHHHHHHHHHHHHTCSEEEECCSSSSS
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHHHHHHc--------CCEE--EEeCCCCCHHHHHHHHHHHHHcCCCEEEEeCCChhh
Confidence 47899999975 444445566666666554 3444 445666777776667777777888887753332 22
Q ss_pred HHHHHHhhccCCccEEEcccCCCCCCCCCCCceEEecCCchHHHHHHHHHHHhcC---CcEEEEEEEcC--ccccchHHH
Q 002309 109 AHIVSYVSNELQVPLLSFGVTDPTLSSLQYPFFVRTTQSDSYQMTAVAEMVSYYG---WNAVSVIFVDN--EYGRNGVSA 183 (938)
Q Consensus 109 ~~~va~~~~~~~iP~Is~~~~~~~l~~~~~p~~~r~~ps~~~~~~ai~~~l~~~~---w~~vaii~~d~--~~g~~~~~~ 183 (938)
.......+...++|+|......+.. ...+++..+..++...+..+++.+...+ .++|++|.... .......+.
T Consensus 72 ~~~~~~~~~~~~iPvV~~~~~~~~~--~~~~~~~~V~~D~~~~g~~a~~~L~~~g~g~~~~I~~i~~~~~~~~~~~R~~G 149 (306)
T 2vk2_A 72 WEPVLKEAKDAEIPVFLLDRSIDVK--DKSLYMTTVTADNILEGKLIGDWLVKEVNGKPCNVVELQGTVGASVAIDRKKG 149 (306)
T ss_dssp CHHHHHHHHHTTCCEEEESSCCCCS--CGGGSSEEEECCHHHHHHHHHHHHHHHHTTSCEEEEEEECSTTCHHHHHHHHH
T ss_pred HHHHHHHHHHCCCCEEEecCCCCCC--CccceEEEEecCHHHHHHHHHHHHHHhcCCCCCeEEEEEcCCCChhHHHHHHH
Confidence 1233344556799999875432211 1011344567777778888888877766 78999998542 334556788
Q ss_pred HHHHHhhcce-EEEEEeecCCCCCCChhhHHHHHHHHhc-----CCceEEEEEeChhhHHHHHHHHHHcCCCCCC
Q 002309 184 LNDKLAERRC-RISYKSGIPPESGVNTGYVMDLLVKVAL-----MESRVIVLHVSPSLGFQVFSVAKYLGMMGNG 252 (938)
Q Consensus 184 l~~~l~~~g~-~v~~~~~~~~~~~~~~~d~~~~l~~lk~-----~~~~viv~~~~~~~~~~~l~~a~~~g~~~~~ 252 (938)
+.+++++.|. ++.... ... .+..+....++++-+ ..+++|+. .+...+..+++++++.|+..++
T Consensus 150 f~~al~~~g~~~~~~~~--~~~--~~~~~~~~~~~~ll~~~~~~~~~~ai~~-~nd~~A~g~~~al~~~G~~vP~ 219 (306)
T 2vk2_A 150 FAEAIKNAPNIKIIRSQ--SGD--FTRSKGKEVMESFIKAENNGKNICMVYA-HNDDMVIGAIQAIKEAGLKPGK 219 (306)
T ss_dssp HHHHTTTCTTEEEEEEE--ECT--TCHHHHHHHHHHHHHHTTTTTTCCEEEE-SSHHHHHHHHHHHHHTTCCBTT
T ss_pred HHHHHhhCCCeEEEEec--cCC--CcHHHHHHHHHHHHHhCCCCCCeeEEEE-CCchHHHHHHHHHHHcCCCCCC
Confidence 9999999885 333211 111 123333344444433 34666554 4556677899999999986544
No 99
>2iks_A DNA-binding transcriptional dual regulator; escherichia coli structural genomics, PSI-2, protein structure initiative; 1.85A {Escherichia coli}
Probab=97.90 E-value=0.00041 Score=73.20 Aligned_cols=206 Identities=12% Similarity=-0.003 Sum_probs=128.3
Q ss_pred eeEEEEEEeeCC-CcchhHHHHHHHHHHHHHhcCCCCCCCCEEEEEEccCCCChHHHHHHHHHHHhcCcEEEEcCCChhH
Q 002309 30 AVVNVGALFTLD-STIGRVAKIAIEEAVKDVNSNSSILHGTKLNITMQSSNCSGFIGMVEALRFMETDIVAIIGPQCSTV 108 (938)
Q Consensus 30 ~~i~IG~i~~~~-~~~g~~~~~a~~~Av~~iN~~~~il~g~~l~~~~~D~~~~~~~a~~~a~~li~~~V~aviGp~~s~~ 108 (938)
.+.+||++.|.. .++-.....+++.+.++. |+++. +.++..++....+....++.++|.+||-......
T Consensus 19 ~~~~Ig~i~~~~~~~~~~~~~~gi~~~~~~~--------g~~~~--~~~~~~~~~~~~~~~~~l~~~~vdgii~~~~~~~ 88 (293)
T 2iks_A 19 RTRSIGLVIPDLENTSYTRIANYLERQARQR--------GYQLL--IACSEDQPDNEMRCIEHLLQRQVDAIIVSTSLPP 88 (293)
T ss_dssp CCCEEEEEESCSCSHHHHHHHHHHHHHHHHT--------TCEEE--EEECTTCHHHHHHHHHHHHHTTCSEEEECCSSCT
T ss_pred CCcEEEEEeCCCcCcHHHHHHHHHHHHHHHC--------CCEEE--EEcCCCCHHHHHHHHHHHHHcCCCEEEEeCCCCC
Confidence 457899999853 333334455555555432 45554 4566667766666667777778888775332222
Q ss_pred HHHHHHhhccCCccEEEcccCCCCCCCCCCCceEEecCCchHHHHHHHHHHHhcCCcEEEEEEEcC--ccccchHHHHHH
Q 002309 109 AHIVSYVSNELQVPLLSFGVTDPTLSSLQYPFFVRTTQSDSYQMTAVAEMVSYYGWNAVSVIFVDN--EYGRNGVSALND 186 (938)
Q Consensus 109 ~~~va~~~~~~~iP~Is~~~~~~~l~~~~~p~~~r~~ps~~~~~~ai~~~l~~~~w~~vaii~~d~--~~g~~~~~~l~~ 186 (938)
...+...+...++|+|......+ + +.+..+..++...+..+++++...|.++|++|.... .......+.+.+
T Consensus 89 ~~~~~~~~~~~~iPvV~~~~~~~---~---~~~~~V~~d~~~~~~~a~~~L~~~G~~~I~~i~~~~~~~~~~~R~~Gf~~ 162 (293)
T 2iks_A 89 EHPFYQRWANDPFPIVALDRALD---R---EHFTSVVGADQDDAEMLAEELRKFPAETVLYLGALPELSVSFLREQGFRT 162 (293)
T ss_dssp TCHHHHTTTTSSSCEEEEESCCC---T---TTCEEEEECHHHHHHHHHHHHHTSCCSSEEEEEECTTSHHHHHHHHHHHH
T ss_pred cHHHHHHHHhCCCCEEEECCccC---c---CCCCEEEecCHHHHHHHHHHHHHCCCCEEEEEecCcccccHHHHHHHHHH
Confidence 22233455678999998754322 1 223456678888888899988888999999998643 334566788999
Q ss_pred HHhhcceEEEEEeecCCCCCCChhhHHHHHHHHhcC--CceEEEEEeChhhHHHHHHHHHHcCCCCCCeEEE
Q 002309 187 KLAERRCRISYKSGIPPESGVNTGYVMDLLVKVALM--ESRVIVLHVSPSLGFQVFSVAKYLGMMGNGYVWI 256 (938)
Q Consensus 187 ~l~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~lk~~--~~~viv~~~~~~~~~~~l~~a~~~g~~~~~~~wi 256 (938)
++++.|....... ... .+..+....+.++-+. .+++|+. .+...+..+++++++.|+..++-+-+
T Consensus 163 ~l~~~g~~~~~~~--~~~--~~~~~~~~~~~~~l~~~~~~~ai~~-~~d~~a~g~~~al~~~g~~vP~di~v 229 (293)
T 2iks_A 163 AWKDDPREVHFLY--ANS--YEREAAAQLFEKWLETHPMPQALFT-TSFALLQGVMDVTLRRDGKLPSDLAI 229 (293)
T ss_dssp HHTTCCCCEEEEE--ESS--SCHHHHHHHHHHHTTTSCCCSEEEE-SSHHHHHHHHHHHHHHHSSCCSSCEE
T ss_pred HHHHcCCCccEEE--cCC--CChhhHHHHHHHHHhcCCCCCEEEE-CChHHHHHHHHHHHHcCCCCCCceEE
Confidence 9999987432221 111 1234444555665443 3566553 45566778899999999865543333
No 100
>3h75_A Periplasmic sugar-binding domain protein; protein structure initiative II (PSI II), sugar binding PROT alpha/beta fold; 1.60A {Pseudomonas fluorescens pf-5}
Probab=97.88 E-value=0.00086 Score=72.79 Aligned_cols=208 Identities=13% Similarity=0.006 Sum_probs=133.3
Q ss_pred eEEEEEEeeCCC--cchhHHHHHHHHHHHHHhcCCCCCCCCEEEEEEccCCCChHHHHHHHHHHHh--cCcEEEEcCCCh
Q 002309 31 VVNVGALFTLDS--TIGRVAKIAIEEAVKDVNSNSSILHGTKLNITMQSSNCSGFIGMVEALRFME--TDIVAIIGPQCS 106 (938)
Q Consensus 31 ~i~IG~i~~~~~--~~g~~~~~a~~~Av~~iN~~~~il~g~~l~~~~~D~~~~~~~a~~~a~~li~--~~V~aviGp~~s 106 (938)
..+||++.|... .+-.....+++-+.++. |+++.+ .++..++..-.+...+++. +++.+||-....
T Consensus 3 ~~~Ig~i~p~~~~~~f~~~~~~g~~~~a~~~--------g~~~~~--~~~~~~~~~~~~~i~~~i~~~~~vDgiIi~~~~ 72 (350)
T 3h75_A 3 LTSVVFLNPGNSTETFWVSYSQFMQAAARDL--------GLDLRI--LYAERDPQNTLQQARELFQGRDKPDYLMLVNEQ 72 (350)
T ss_dssp CCEEEEEECSCTTCHHHHHHHHHHHHHHHHH--------TCEEEE--EECTTCHHHHHHHHHHHHHSSSCCSEEEEECCS
T ss_pred CCEEEEECCCCCCChHHHHHHHHHHHHHHHc--------CCeEEE--EECCCCHHHHHHHHHHHHhcCCCCCEEEEeCch
Confidence 468999999753 34455667777776665 354444 4777788887888888888 488776643333
Q ss_pred hHHHHHHHhhccCCccEEEcccCCCCCCC-------CCCC-ceEEecCCchHHHHHHHHHHHhcC------C-cEEEEEE
Q 002309 107 TVAHIVSYVSNELQVPLLSFGVTDPTLSS-------LQYP-FFVRTTQSDSYQMTAVAEMVSYYG------W-NAVSVIF 171 (938)
Q Consensus 107 ~~~~~va~~~~~~~iP~Is~~~~~~~l~~-------~~~p-~~~r~~ps~~~~~~ai~~~l~~~~------w-~~vaii~ 171 (938)
.....+...+...+||+|......+.... ..|+ ++-.+.+++...+..+++++...+ - ++++++.
T Consensus 73 ~~~~~~~~~~~~~giPvV~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~D~~~~g~~a~~~L~~~g~~~~~g~~~~i~~i~ 152 (350)
T 3h75_A 73 YVAPQILRLSQGSGIKLFIVNSPLTLDQRELIGQSRQNYSDWIGSMVGDDEEAGYRMLKELLHKLGPVPAGHGIELLAFS 152 (350)
T ss_dssp SHHHHHHHHHTTSCCEEEEEESCCCTTTC------------CEEEEECCHHHHHHHHHHHHHHHHCCCCSSCCEEEEEEE
T ss_pred hhHHHHHHHHHhCCCcEEEEcCCCChHHHhhhcCCchhccceeeeecCChHHHHHHHHHHHHHHhhhhcCCCCceEEEEe
Confidence 44555666778889999987655433221 1122 256677888888898998877665 4 7999997
Q ss_pred Ec--CccccchHHHHHHHHhhcce-EEEEEeecCCCCCCChhhHHHHHHHHhcCCceEE-EEEeChhhHHHHHHHHHHcC
Q 002309 172 VD--NEYGRNGVSALNDKLAERRC-RISYKSGIPPESGVNTGYVMDLLVKVALMESRVI-VLHVSPSLGFQVFSVAKYLG 247 (938)
Q Consensus 172 ~d--~~~g~~~~~~l~~~l~~~g~-~v~~~~~~~~~~~~~~~d~~~~l~~lk~~~~~vi-v~~~~~~~~~~~l~~a~~~g 247 (938)
.. ........+.+.+++++.|. .+... +... .+.+.....+.++-+..+++- |++++...+..+++++++.|
T Consensus 153 g~~~~~~~~~R~~Gf~~~l~~~~~~~~~~~--~~~~--~~~~~~~~~~~~~L~~~~~~~aI~~~~d~~a~g~~~al~~~G 228 (350)
T 3h75_A 153 GLKVTPAAQLRERGLRRALAEHPQVHLRQL--VYGE--WNRERAYRQAQQLLKRYPKTQLVWSANDEMALGAMQAARELG 228 (350)
T ss_dssp SCTTSHHHHHHHHHHHHHHHHCTTEEEEEE--EECT--TCHHHHHHHHHHHHHHCTTEEEEEESSHHHHHHHHHHHHHTT
T ss_pred CCCCCHHHHHHHHHHHHHHHHCCCeEEEEE--eeCC--CcHHHHHHHHHHHHHhCCCcCEEEECChHHHHHHHHHHHHcC
Confidence 43 23445567889999999886 22222 2222 224444455555544334332 33455567778999999999
Q ss_pred CCCCC
Q 002309 248 MMGNG 252 (938)
Q Consensus 248 ~~~~~ 252 (938)
+..++
T Consensus 229 ~~vP~ 233 (350)
T 3h75_A 229 RKPGT 233 (350)
T ss_dssp CCBTT
T ss_pred CCCCC
Confidence 86554
No 101
>2ioy_A Periplasmic sugar-binding protein; ribose binding protein, thermophilic proteins; HET: RIP; 1.90A {Thermoanaerobacter tengcongensis}
Probab=97.88 E-value=0.001 Score=69.77 Aligned_cols=203 Identities=10% Similarity=0.120 Sum_probs=124.4
Q ss_pred EEEEEeeCC-CcchhHHHHHHHHHHHHHhcCCCCCCCCEEEEEEccCCCChHHHHHHHHHHHhcCcEEEEc-CCChhHHH
Q 002309 33 NVGALFTLD-STIGRVAKIAIEEAVKDVNSNSSILHGTKLNITMQSSNCSGFIGMVEALRFMETDIVAIIG-PQCSTVAH 110 (938)
Q Consensus 33 ~IG~i~~~~-~~~g~~~~~a~~~Av~~iN~~~~il~g~~l~~~~~D~~~~~~~a~~~a~~li~~~V~aviG-p~~s~~~~ 110 (938)
+||++.|.. .++-.....+++.+.++. |+.+ .+.++..++....+....++.++|.+||- |.......
T Consensus 3 ~Igvi~~~~~~~f~~~~~~gi~~~~~~~--------g~~~--~~~~~~~~~~~~~~~i~~l~~~~vdgiIi~~~~~~~~~ 72 (283)
T 2ioy_A 3 TIGLVISTLNNPFFVTLKNGAEEKAKEL--------GYKI--IVEDSQNDSSKELSNVEDLIQQKVDVLLINPVDSDAVV 72 (283)
T ss_dssp EEEEEESCSSSHHHHHHHHHHHHHHHHH--------TCEE--EEEECTTCHHHHHHHHHHHHHTTCSEEEECCSSTTTTH
T ss_pred EEEEEecCCCCHHHHHHHHHHHHHHHhc--------CcEE--EEecCCCCHHHHHHHHHHHHHcCCCEEEEeCCchhhhH
Confidence 689998864 444445566666666654 3444 44566677776666777788888887663 44433322
Q ss_pred HHHHhhccCCccEEEcccCCCCCCCCCCCceEEecCCchHHHHHHHHHHHhc-C-CcEEEEEEEcC--ccccchHHHHHH
Q 002309 111 IVSYVSNELQVPLLSFGVTDPTLSSLQYPFFVRTTQSDSYQMTAVAEMVSYY-G-WNAVSVIFVDN--EYGRNGVSALND 186 (938)
Q Consensus 111 ~va~~~~~~~iP~Is~~~~~~~l~~~~~p~~~r~~ps~~~~~~ai~~~l~~~-~-w~~vaii~~d~--~~g~~~~~~l~~ 186 (938)
.....+...++|+|......+ + .+....+..++...+...+++|... | -+++++|.... .......+.+.+
T Consensus 73 ~~~~~~~~~~iPvV~~~~~~~---~--~~~~~~V~~D~~~~g~~a~~~L~~~~gg~~~I~~i~g~~~~~~~~~R~~Gf~~ 147 (283)
T 2ioy_A 73 TAIKEANSKNIPVITIDRSAN---G--GDVVCHIASDNVKGGEMAAEFIAKALKGKGNVVELEGIPGASAARDRGKGFDE 147 (283)
T ss_dssp HHHHHHHHTTCCEEEESSCCS---S--SCCSEEEEECHHHHHHHHHHHHHHHTTTCEEEEEEECCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCeEEEecCCCC---C--cceeEEEecChHHHHHHHHHHHHHHcCCCceEEEEECCCCCccHHHHHHHHHH
Confidence 333445667999998743221 1 1123345667777788888887665 5 89999998543 233456778999
Q ss_pred HHhhc-ceEEEEEeecCCCCCCChhhHHHHHHHHhcC--CceEEEEEeChhhHHHHHHHHHHcCCCCCCeEEEE
Q 002309 187 KLAER-RCRISYKSGIPPESGVNTGYVMDLLVKVALM--ESRVIVLHVSPSLGFQVFSVAKYLGMMGNGYVWIA 257 (938)
Q Consensus 187 ~l~~~-g~~v~~~~~~~~~~~~~~~d~~~~l~~lk~~--~~~viv~~~~~~~~~~~l~~a~~~g~~~~~~~wi~ 257 (938)
++++. |+++.....-. .+.++....++++.+. .++.| ++.+...+..+++++++.|+ .+...++
T Consensus 148 al~~~~~~~~~~~~~~~----~~~~~~~~~~~~ll~~~~~~~ai-~~~nD~~A~g~~~al~~~G~--~di~viG 214 (283)
T 2ioy_A 148 AIAKYPDIKIVAKQAAD----FDRSKGLSVMENILQAQPKIDAV-FAQNDEMALGAIKAIEAANR--QGIIVVG 214 (283)
T ss_dssp HHTTCTTEEEEEEEECT----TCHHHHHHHHHHHHHHCSCCCEE-EESSHHHHHHHHHHHHHTTC--CCCEEEE
T ss_pred HHHhCCCCEEEeeccCC----CCHHHHHHHHHHHHHhCCCccEE-EECCchHHHHHHHHHHHCCC--CCcEEEE
Confidence 99988 88765322111 1234444445554332 34554 44455678889999999997 3444444
No 102
>3dbi_A Sugar-binding transcriptional regulator, LACI FAM; structural genomics, sugar-binding transcriptional regulator structure initiative, PSI-2; HET: MSE; 2.45A {Escherichia coli K12}
Probab=97.88 E-value=0.0002 Score=77.39 Aligned_cols=208 Identities=8% Similarity=-0.019 Sum_probs=132.9
Q ss_pred eeEEEEEEeeC---CCcchhHHHHHHHHHHHHHhcCCCCCCCCEEEEEEccCCCChHHHHHHHHHHHhcCcEEEEcCCCh
Q 002309 30 AVVNVGALFTL---DSTIGRVAKIAIEEAVKDVNSNSSILHGTKLNITMQSSNCSGFIGMVEALRFMETDIVAIIGPQCS 106 (938)
Q Consensus 30 ~~i~IG~i~~~---~~~~g~~~~~a~~~Av~~iN~~~~il~g~~l~~~~~D~~~~~~~a~~~a~~li~~~V~aviGp~~s 106 (938)
..-+||+++|. +.++-.....+++.+.++. |+.+ .+.++..++....+....++.++|.+||-....
T Consensus 60 ~~~~Igvi~~~~~~~~~~~~~~~~gi~~~a~~~--------g~~~--~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~ 129 (338)
T 3dbi_A 60 STQTLGLVVTNTLYHGIYFSELLFHAARMAEEK--------GRQL--LLADGKHSAEEERQAIQYLLDLRCDAIMIYPRF 129 (338)
T ss_dssp CCSEEEEEECTTTTSTTHHHHHHHHHHHHHHHT--------TCEE--EEEECTTSHHHHHHHHHHHHHTTCSEEEECCSS
T ss_pred CCCEEEEEecCCcccChhHHHHHHHHHHHHHHC--------CCEE--EEEeCCCChHHHHHHHHHHHhCCCCEEEEeCCC
Confidence 35689999996 2333334455555554442 4544 445666777776667777778888887753333
Q ss_pred hHHHHHHHhhccCCccEEEcccCCCCCCCCCCCceEEecCCchHHHHHHHHHHHhcCCcEEEEEEEc--CccccchHHHH
Q 002309 107 TVAHIVSYVSNELQVPLLSFGVTDPTLSSLQYPFFVRTTQSDSYQMTAVAEMVSYYGWNAVSVIFVD--NEYGRNGVSAL 184 (938)
Q Consensus 107 ~~~~~va~~~~~~~iP~Is~~~~~~~l~~~~~p~~~r~~ps~~~~~~ai~~~l~~~~w~~vaii~~d--~~~g~~~~~~l 184 (938)
.....+...+...++|+|......+. +.+..+..++...+...++++...|.+++++|... ........+.+
T Consensus 130 ~~~~~~~~~~~~~~iPvV~~~~~~~~------~~~~~V~~D~~~~~~~a~~~L~~~G~~~I~~i~~~~~~~~~~~R~~Gf 203 (338)
T 3dbi_A 130 LSVDEIDDIIDAHSQPIMVLNRRLRK------NSSHSVWCDHKQTSFNAVAELINAGHQEIAFLTGSMDSPTSIERLAGY 203 (338)
T ss_dssp SCHHHHHHHHHHCSSCEEEESSCCSS------SGGGEECBCHHHHHHHHHHHHHHTTCCSEEEECCCTTCHHHHHHHHHH
T ss_pred CChHHHHHHHHcCCCCEEEEcCCCCC------CCCCEEEEChHHHHHHHHHHHHHCCCCEEEEEeCCCCCccHHHHHHHH
Confidence 23355667788889999986543221 12234667888888888999888899999999753 33445667889
Q ss_pred HHHHhhcceEEEEEeecCCCCCCChhhHHHHHHHHhc--CCceEEEEEeChhhHHHHHHHHHHcCCCCCCeEEE
Q 002309 185 NDKLAERRCRISYKSGIPPESGVNTGYVMDLLVKVAL--MESRVIVLHVSPSLGFQVFSVAKYLGMMGNGYVWI 256 (938)
Q Consensus 185 ~~~l~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~lk~--~~~~viv~~~~~~~~~~~l~~a~~~g~~~~~~~wi 256 (938)
.+++++.|+.+.....+... .+..+-...+.++-+ .++++|+ +.+...+..+++++++.|+..++-+-+
T Consensus 204 ~~al~~~g~~~~~~~~~~~~--~~~~~~~~~~~~ll~~~~~~~ai~-~~nd~~A~g~~~al~~~G~~vP~di~v 274 (338)
T 3dbi_A 204 KDALAQHGIALNEKLIANGK--WTPASGAEGVEMLLERGAKFSALV-ASNDDMAIGAMKALHERGVAVPEQVSV 274 (338)
T ss_dssp HHHHHHTTCCCCGGGEECCC--SSHHHHHHHHHHHHHTTCCCSEEE-ESSHHHHHHHHHHHHHTTCCTTTTCEE
T ss_pred HHHHHHCCCCCCcceEEeCC--CCHHHHHHHHHHHHcCCCCCeEEE-ECChHHHHHHHHHHHHcCCCCCCCeEE
Confidence 99999999765321111211 223444445555543 3466655 345567778999999999876543333
No 103
>3l6u_A ABC-type sugar transport system periplasmic compo; structural genomics, nysgrc, target 11006S, PSI-2, protein S initiative; 1.90A {Exiguobacterium sibiricum}
Probab=97.86 E-value=0.00072 Score=71.25 Aligned_cols=201 Identities=10% Similarity=0.002 Sum_probs=129.0
Q ss_pred CeeEEEEEEeeCC-CcchhHHHHHHHHHHHHHhcCCCCCCCCEEEEEEccCCCChHHHHHHHHHHHhcCcEEEEc-CCCh
Q 002309 29 PAVVNVGALFTLD-STIGRVAKIAIEEAVKDVNSNSSILHGTKLNITMQSSNCSGFIGMVEALRFMETDIVAIIG-PQCS 106 (938)
Q Consensus 29 ~~~i~IG~i~~~~-~~~g~~~~~a~~~Av~~iN~~~~il~g~~l~~~~~D~~~~~~~a~~~a~~li~~~V~aviG-p~~s 106 (938)
....+||+++|.. ..+-.....+++.+.++. |+++ .+.++..++....+....++.+++.+||- |...
T Consensus 6 ~~~~~Ig~i~~~~~~~~~~~~~~gi~~~a~~~--------g~~~--~~~~~~~~~~~~~~~~~~l~~~~vdgiI~~~~~~ 75 (293)
T 3l6u_A 6 PKRNIVGFTIVNDKHEFAQRLINAFKAEAKAN--------KYEA--LVATSQNSRISEREQILEFVHLKVDAIFITTLDD 75 (293)
T ss_dssp ---CEEEEEESCSCSHHHHHHHHHHHHHHHHT--------TCEE--EEEECSSCHHHHHHHHHHHHHTTCSEEEEECSCT
T ss_pred CCCcEEEEEEecCCcHHHHHHHHHHHHHHHHc--------CCEE--EEECCCCCHHHHHHHHHHHHHcCCCEEEEecCCh
Confidence 3467899999864 333334455555555543 4444 44566777777777777888888877763 3433
Q ss_pred hHHHHHHHhhccCCccEEEcccCCCCCCCCCCCceEEecCCchHHHHHHHHHHHh-c-CCc-----EEEEEEEc--Cccc
Q 002309 107 TVAHIVSYVSNELQVPLLSFGVTDPTLSSLQYPFFVRTTQSDSYQMTAVAEMVSY-Y-GWN-----AVSVIFVD--NEYG 177 (938)
Q Consensus 107 ~~~~~va~~~~~~~iP~Is~~~~~~~l~~~~~p~~~r~~ps~~~~~~ai~~~l~~-~-~w~-----~vaii~~d--~~~g 177 (938)
.........+...++|+|......+. .+.+..+..++...+..+++++.. + |-+ +|++|... ....
T Consensus 76 ~~~~~~~~~~~~~~iPvV~~~~~~~~-----~~~~~~V~~D~~~~g~~~~~~l~~~~~g~~~~~~~~i~~i~g~~~~~~~ 150 (293)
T 3l6u_A 76 VYIGSAIEEAKKAGIPVFAIDRMIRS-----DAVVSSITSNNQMIGEQLASYIKNELIKQTGRSTGRIVEITGTANVYTT 150 (293)
T ss_dssp TTTHHHHHHHHHTTCCEEEESSCCCC-----TTCSEEEEECHHHHHHHHHHHHHHHHHHHHSCSCEEEEEEECSTTCHHH
T ss_pred HHHHHHHHHHHHcCCCEEEecCCCCC-----CcceeEEecCHHHHHHHHHHHHHHHhccCCCCCCceEEEEECCCCCchH
Confidence 33334455566779999987543322 123456778888888888888776 5 777 99999843 3345
Q ss_pred cchHHHHHHHHhhc-ceEEEEEeecCCCCCCChhhHHHHHHHHhcC--CceEEEEEeChhhHHHHHHHHHHcCCC
Q 002309 178 RNGVSALNDKLAER-RCRISYKSGIPPESGVNTGYVMDLLVKVALM--ESRVIVLHVSPSLGFQVFSVAKYLGMM 249 (938)
Q Consensus 178 ~~~~~~l~~~l~~~-g~~v~~~~~~~~~~~~~~~d~~~~l~~lk~~--~~~viv~~~~~~~~~~~l~~a~~~g~~ 249 (938)
....+.+.+++++. |+++.....-. .+..+....+.++-.. ++++| ++.+...+..+++++++.|+.
T Consensus 151 ~~R~~gf~~~l~~~~g~~~~~~~~~~----~~~~~~~~~~~~~l~~~~~~~ai-~~~~d~~a~g~~~al~~~g~~ 220 (293)
T 3l6u_A 151 NERHRGFLKGIENEPTLSIVDSVSGN----YDPVTSERVMRQVIDSGIPFDAV-YCHNDDIAMGVLEALKKAKIS 220 (293)
T ss_dssp HHHHHHHHHHHTTCTTEEEEEEEECT----TCHHHHHHHHHHHHHTTCCCSEE-EESSHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHhCCCcEEeeeccCC----CCHHHHHHHHHHHHHhCCCCCEE-EECCchHHHHHHHHHHhCCCC
Confidence 56678999999999 98876543222 2244555555555443 34554 345556677899999999975
No 104
>2fep_A Catabolite control protein A; CCPA, transcriptional regulator; HET: SEP; 2.45A {Bacillus subtilis} PDB: 2nzu_G* 1sxh_A 1sxi_A 1sxg_A* 2nzv_G* 2oen_G*
Probab=97.86 E-value=0.0004 Score=73.15 Aligned_cols=205 Identities=8% Similarity=0.016 Sum_probs=127.6
Q ss_pred CCeeEEEEEEeeCC-CcchhHHHHHHHHHHHHHhcCCCCCCCCEEEEEEccCCCChHHHHHHHHHHHhcCcEEEEcCCCh
Q 002309 28 RPAVVNVGALFTLD-STIGRVAKIAIEEAVKDVNSNSSILHGTKLNITMQSSNCSGFIGMVEALRFMETDIVAIIGPQCS 106 (938)
Q Consensus 28 ~~~~i~IG~i~~~~-~~~g~~~~~a~~~Av~~iN~~~~il~g~~l~~~~~D~~~~~~~a~~~a~~li~~~V~aviGp~~s 106 (938)
...+.+||+++|.. .++-.....+++.+.++. |+++.+ .++..++....+....++.++|.+||-....
T Consensus 13 ~~~s~~Igvi~~~~~~~~~~~~~~gi~~~a~~~--------g~~~~~--~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~ 82 (289)
T 2fep_A 13 SKKTTTVGVIIPDISSIFYSELARGIEDIATMY--------KYNIIL--SNSDQNMEKELHLLNTMLGKQVDGIVFMGGN 82 (289)
T ss_dssp ---CCEEEEEESCTTSHHHHHHHHHHHHHHHHT--------TCEEEE--EECTTCHHHHHHHHHHHHHTTCSEEEECCSC
T ss_pred cCCCCeEEEEeCCCCCchHHHHHHHHHHHHHHc--------CCEEEE--EeCCCCHHHHHHHHHHHHhCCCCEEEEecCC
Confidence 34567899999853 333344556666555542 455544 4666677666666777777888887743222
Q ss_pred hHHHHHHHhhccCCccEEEcccCCCCCCCCCCCceEEecCCchHHHHHHHHHHHhcCCcEEEEEEEcC---ccccchHHH
Q 002309 107 TVAHIVSYVSNELQVPLLSFGVTDPTLSSLQYPFFVRTTQSDSYQMTAVAEMVSYYGWNAVSVIFVDN---EYGRNGVSA 183 (938)
Q Consensus 107 ~~~~~va~~~~~~~iP~Is~~~~~~~l~~~~~p~~~r~~ps~~~~~~ai~~~l~~~~w~~vaii~~d~---~~g~~~~~~ 183 (938)
.....+. .+...++|+|......+ . +.+..+..++...+..+++++...|.++|++|.... .......+.
T Consensus 83 ~~~~~~~-~l~~~~iPvV~~~~~~~---~---~~~~~V~~D~~~~g~~a~~~L~~~G~~~I~~i~~~~~~~~~~~~R~~G 155 (289)
T 2fep_A 83 ITDEHVA-EFKRSPVPIVLAASVEE---Q---EETPSVAIDYEQAIYDAVKLLVDKGHTDIAFVSGPMAEPINRSKKLQG 155 (289)
T ss_dssp CCHHHHH-HHHHSSSCEEEESCCCT---T---CCSCEEECCHHHHHHHHHHHHHHTTCSSEEEEESCTTSHHHHTTHHHH
T ss_pred CCHHHHH-HHHhcCCCEEEEccccC---C---CCCCEEEECcHHHHHHHHHHHHHCCCCeEEEEeCCccccccHHHHHHH
Confidence 1222233 34467999998754322 1 223356678888889899998888999999998543 245667889
Q ss_pred HHHHHhhcceEEEEEeecCCCCCCChhhHHHHHHHHhcC--CceEEEEEeChhhHHHHHHHHHHcCCCCCC
Q 002309 184 LNDKLAERRCRISYKSGIPPESGVNTGYVMDLLVKVALM--ESRVIVLHVSPSLGFQVFSVAKYLGMMGNG 252 (938)
Q Consensus 184 l~~~l~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~lk~~--~~~viv~~~~~~~~~~~l~~a~~~g~~~~~ 252 (938)
+.+++++.|+.+.....+... .+..+....++++-+. .+++|+. .+...+..+++++++.|+..++
T Consensus 156 f~~al~~~g~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~ai~~-~~d~~A~g~~~al~~~G~~vP~ 223 (289)
T 2fep_A 156 YKRALEEANLPFNEQFVAEGD--YTYDSGLEALQHLMSLDKKPTAILS-ATDEMALGIIHAAQDQGLSIPE 223 (289)
T ss_dssp HHHHHHHTTCCCCGGGEEECC--SCHHHHHHHHHHHTTSSSCCSEEEE-SSHHHHHHHHHHHHHTTCCTTT
T ss_pred HHHHHHHcCCCCChheEeeCC--CCHHHHHHHHHHHHcCCCCCCEEEE-CCHHHHHHHHHHHHHcCCCCCC
Confidence 999999998764321111111 2234444556665443 4666554 4556688899999999986544
No 105
>3gbv_A Putative LACI-family transcriptional regulator; NYSGXRC, PSI-II, 11231J, structur genomics, protein structure initiative; 2.20A {Bacteroides fragilis}
Probab=97.85 E-value=0.00034 Score=74.18 Aligned_cols=210 Identities=10% Similarity=-0.011 Sum_probs=130.2
Q ss_pred CeeEEEEEEeeCC--CcchhHHHHHHHHHHHHHhcCCCCCCCCEEEEEEc-cCCCChHHHHHHHHHHHhcCcEEEE-cCC
Q 002309 29 PAVVNVGALFTLD--STIGRVAKIAIEEAVKDVNSNSSILHGTKLNITMQ-SSNCSGFIGMVEALRFMETDIVAII-GPQ 104 (938)
Q Consensus 29 ~~~i~IG~i~~~~--~~~g~~~~~a~~~Av~~iN~~~~il~g~~l~~~~~-D~~~~~~~a~~~a~~li~~~V~avi-Gp~ 104 (938)
..+.+||+++|.. ..+-.....+++.+.++.+ |+.+.+... ++..++..-.+....++.+++.+|| -|.
T Consensus 6 ~~~~~Igvi~~~~~~~~~~~~~~~gi~~~a~~~~-------g~~~~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiii~~~ 78 (304)
T 3gbv_A 6 NKKYTFACLLPKHLEGEYWTDVQKGIREAVTTYS-------DFNISANITHYDPYDYNSFVATSQAVIEEQPDGVMFAPT 78 (304)
T ss_dssp -CCEEEEEEEECCCTTSHHHHHHHHHHHHHHHTG-------GGCEEEEEEEECSSCHHHHHHHHHHHHTTCCSEEEECCS
T ss_pred CCcceEEEEecCCCCchHHHHHHHHHHHHHHHHH-------hCCeEEEEEcCCCCCHHHHHHHHHHHHhcCCCEEEECCC
Confidence 4568999999984 4443455566666655541 455556554 3445776666667777788888776 344
Q ss_pred ChhHHHHHHHhhccCCccEEEcccCCCCCCCCCCCceEEecCCchHHHHHHHHHHHhcCC--cEEEEEEEc------Ccc
Q 002309 105 CSTVAHIVSYVSNELQVPLLSFGVTDPTLSSLQYPFFVRTTQSDSYQMTAVAEMVSYYGW--NAVSVIFVD------NEY 176 (938)
Q Consensus 105 ~s~~~~~va~~~~~~~iP~Is~~~~~~~l~~~~~p~~~r~~ps~~~~~~ai~~~l~~~~w--~~vaii~~d------~~~ 176 (938)
...........+...++|+|......+.. +.+-.+.+++...+..+++++...+. ++|++|..+ ...
T Consensus 79 ~~~~~~~~~~~~~~~~iPvV~~~~~~~~~-----~~~~~V~~D~~~~g~~a~~~l~~~g~~~~~i~~i~~~~~g~~~~~~ 153 (304)
T 3gbv_A 79 VPQYTKGFTDALNELGIPYIYIDSQIKDA-----PPLAFFGQNSHQSGYFAARMLMLLAVNDREIVIFRKIHEGVIGSNQ 153 (304)
T ss_dssp SGGGTHHHHHHHHHHTCCEEEESSCCTTS-----CCSEEEECCHHHHHHHHHHHHHHHSTTCSEEEEEEEEBTTBCCCHH
T ss_pred ChHHHHHHHHHHHHCCCeEEEEeCCCCCC-----CceEEEecChHHHHHHHHHHHHHHhCCCCeEEEEEecccCCccchh
Confidence 44333444555666799999875433211 12445678888889999999888887 999999843 233
Q ss_pred ccchHHHHHHHHhhcceE--EEEEeecCCCCCCChhhHHHHHHHHhc--CCceEEEEEeChhhHHHHHHHHHHcCCCCCC
Q 002309 177 GRNGVSALNDKLAERRCR--ISYKSGIPPESGVNTGYVMDLLVKVAL--MESRVIVLHVSPSLGFQVFSVAKYLGMMGNG 252 (938)
Q Consensus 177 g~~~~~~l~~~l~~~g~~--v~~~~~~~~~~~~~~~d~~~~l~~lk~--~~~~viv~~~~~~~~~~~l~~a~~~g~~~~~ 252 (938)
.....+.+.+++++.|.. +.....-... .......+.++-+ .++++|+...+. +..+++++++.|+ .+
T Consensus 154 ~~~R~~gf~~~l~~~g~~~~~~~~~~~~~~----~~~~~~~~~~~l~~~~~~~ai~~~~d~--a~g~~~al~~~g~--~d 225 (304)
T 3gbv_A 154 QESREIGFRQYMQEHHPACNILELNLHADL----NIEDSRMLDDFFREHPDVKHGITFNSK--VYIIGEYLQQRRK--SD 225 (304)
T ss_dssp HHHHHHHHHHHHHHHCTTSEEEEEEEESSC----SSCHHHHHHHHHHHCTTCCEEEESSSC--THHHHHHHHHTTC--CS
T ss_pred HHHHHHHHHHHHHhhCCCcEEEEeeecCCC----HHHHHHHHHHHHHhCCCeEEEEEcCcc--hHHHHHHHHHcCC--CC
Confidence 456678899999988754 3322111111 2222333333322 357777665554 7779999999998 44
Q ss_pred eEEEEe
Q 002309 253 YVWIAT 258 (938)
Q Consensus 253 ~~wi~~ 258 (938)
...++.
T Consensus 226 i~vig~ 231 (304)
T 3gbv_A 226 FSLIGY 231 (304)
T ss_dssp CEEEEE
T ss_pred cEEEEe
Confidence 444443
No 106
>3clk_A Transcription regulator; 11017J, PSI-II, NYSGXRC, dimer, structural genomics, protein structure initiative; 2.08A {Lactobacillus plantarum WCFS1}
Probab=97.83 E-value=0.00012 Score=77.21 Aligned_cols=203 Identities=12% Similarity=0.056 Sum_probs=115.3
Q ss_pred eeEEEEEEeeCC-CcchhHHHHHHHHHHHHHhcCCCCCCCCEEEEEEccCCCChHHHHHHHHHHHhcCcEEEEcCCChhH
Q 002309 30 AVVNVGALFTLD-STIGRVAKIAIEEAVKDVNSNSSILHGTKLNITMQSSNCSGFIGMVEALRFMETDIVAIIGPQCSTV 108 (938)
Q Consensus 30 ~~i~IG~i~~~~-~~~g~~~~~a~~~Av~~iN~~~~il~g~~l~~~~~D~~~~~~~a~~~a~~li~~~V~aviGp~~s~~ 108 (938)
.+.+||++.|.. ..+-.....+++.+.++ . |+++.+. .++..++....+....++.++|.+||.......
T Consensus 7 ~~~~Ig~i~~~~~~~~~~~~~~gi~~~a~~----~----g~~~~~~-~~~~~~~~~~~~~~~~l~~~~vdgiI~~~~~~~ 77 (290)
T 3clk_A 7 SSNVIAAVVSSVRTNFAQQILDGIQEEAHK----N----GYNLIIV-YSGSADPEEQKHALLTAIERPVMGILLLSIALT 77 (290)
T ss_dssp -CCEEEEECCCCSSSHHHHHHHHHHHHHHT----T----TCEEEEE-C----------CHHHHHHSSCCSEEEEESCC--
T ss_pred cCCEEEEEeCCCCChHHHHHHHHHHHHHHH----c----CCeEEEE-eCCCCCHHHHHHHHHHHHhcCCCEEEEecccCC
Confidence 456899999853 43333445555555443 2 4555443 155555555555566677778887764322222
Q ss_pred HHHHHHhhccCCccEEEcccCCCCCCCCCCCceEEecCCchHHHHHHHHHHHhcCCcEEEEEEEc--CccccchHHHHHH
Q 002309 109 AHIVSYVSNELQVPLLSFGVTDPTLSSLQYPFFVRTTQSDSYQMTAVAEMVSYYGWNAVSVIFVD--NEYGRNGVSALND 186 (938)
Q Consensus 109 ~~~va~~~~~~~iP~Is~~~~~~~l~~~~~p~~~r~~ps~~~~~~ai~~~l~~~~w~~vaii~~d--~~~g~~~~~~l~~ 186 (938)
. .....+...++|+|......+. + +..+..++...+..+++++...|.++|++|..+ ........+.+.+
T Consensus 78 ~-~~~~~l~~~~iPvV~~~~~~~~------~-~~~V~~D~~~~g~~a~~~L~~~G~~~i~~i~~~~~~~~~~~R~~gf~~ 149 (290)
T 3clk_A 78 D-DNLQLLQSSDVPYCFLSMGFDD------D-RPFISSDDEDIGYQATNLLINEGHRQIGIAGIDQYPYTGRKRLAGYKK 149 (290)
T ss_dssp ---CHHHHHCC--CEEEESCC--C------C-SCEEECCHHHHHHHHHHHHHTTTCCSEEEESCCCCTTTHHHHHHHHHH
T ss_pred H-HHHHHHHhCCCCEEEEcCCCCC------C-CCEEEeChHHHHHHHHHHHHHcCCCEEEEEeCCCCCcchHHHHHHHHH
Confidence 2 2233455689999986543221 2 345667888888999999888899999999853 3345667788999
Q ss_pred HHhhcceEEEEEeecCCCCCCChhhHHHHHHHHhc-CCceEEEEEeChhhHHHHHHHHHHcCCCCCC
Q 002309 187 KLAERRCRISYKSGIPPESGVNTGYVMDLLVKVAL-MESRVIVLHVSPSLGFQVFSVAKYLGMMGNG 252 (938)
Q Consensus 187 ~l~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~lk~-~~~~viv~~~~~~~~~~~l~~a~~~g~~~~~ 252 (938)
++++.|+.+.....+... .+..+....+.++-+ .++++|+. .+...+..+++++++.|+..++
T Consensus 150 ~l~~~g~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~ai~~-~~d~~a~g~~~al~~~g~~vP~ 213 (290)
T 3clk_A 150 ALKEANIAINQEWIKPGD--YSYTSGEQAMKAFGKNTDLTGIIA-ASDMTAIGILNQASSFGIEVPK 213 (290)
T ss_dssp HHHHTTCCCCGGGEECCC--SSHHHHHHHHHHHCTTCCCSEEEE-SSHHHHHHHHHHHHHTTCCTTT
T ss_pred HHHHcCCCCCcceEEcCC--CChhhHHHHHHHHhccCCCcEEEE-CCcHHHHHHHHHHHHcCCCCCC
Confidence 999998764311111111 223444445555543 45666554 4556677889999999986544
No 107
>3d8u_A PURR transcriptional regulator; APC91343.1, vibrio parahaem RIMD 2210633, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.88A {Vibrio parahaemolyticus}
Probab=97.82 E-value=0.00036 Score=72.78 Aligned_cols=206 Identities=9% Similarity=-0.004 Sum_probs=125.9
Q ss_pred eEEEEEEeeCC-CcchhHHHHHHHHHHHHHhcCCCCCCCCEEEEEEccCCCChHHHHHHHHHHHhcCcEEEEc-CCChhH
Q 002309 31 VVNVGALFTLD-STIGRVAKIAIEEAVKDVNSNSSILHGTKLNITMQSSNCSGFIGMVEALRFMETDIVAIIG-PQCSTV 108 (938)
Q Consensus 31 ~i~IG~i~~~~-~~~g~~~~~a~~~Av~~iN~~~~il~g~~l~~~~~D~~~~~~~a~~~a~~li~~~V~aviG-p~~s~~ 108 (938)
+-+||++.|.. .++-.....+++.+.++. |+++.+ .++..++....+....++.++|.++|- |....
T Consensus 3 s~~Ig~i~~~~~~~~~~~~~~gi~~~~~~~--------g~~~~~--~~~~~~~~~~~~~~~~l~~~~vdgii~~~~~~~- 71 (275)
T 3d8u_A 3 AYSIALIIPSLFEKACAHFLPSFQQALNKA--------GYQLLL--GYSDYSIEQEEKLLSTFLESRPAGVVLFGSEHS- 71 (275)
T ss_dssp -CEEEEEESCSSCHHHHHHHHHHHHHHHHT--------SCEECC--EECTTCHHHHHHHHHHHHTSCCCCEEEESSCCC-
T ss_pred ceEEEEEeCCCccccHHHHHHHHHHHHHHC--------CCEEEE--EcCCCCHHHHHHHHHHHHhcCCCEEEEeCCCCC-
Confidence 35799999853 333334555666555542 454443 455567766666666777777776653 22222
Q ss_pred HHHHHHhhccCCccEEEcccCCCCCCCCCCCceEEecCCchHHHHHHHHHHHhcCCcEEEEEEEcC--ccccchHHHHHH
Q 002309 109 AHIVSYVSNELQVPLLSFGVTDPTLSSLQYPFFVRTTQSDSYQMTAVAEMVSYYGWNAVSVIFVDN--EYGRNGVSALND 186 (938)
Q Consensus 109 ~~~va~~~~~~~iP~Is~~~~~~~l~~~~~p~~~r~~ps~~~~~~ai~~~l~~~~w~~vaii~~d~--~~g~~~~~~l~~ 186 (938)
. .....+...++|+|......+ + +.+..+..++...+..+++++...|.++|++|..+. .......+.+.+
T Consensus 72 ~-~~~~~l~~~~iPvV~~~~~~~---~---~~~~~V~~d~~~~~~~a~~~L~~~G~~~i~~i~~~~~~~~~~~R~~gf~~ 144 (275)
T 3d8u_A 72 Q-RTHQLLEASNTPVLEIAELSS---K---ASYLNIGVDHFEVGKACTRHLIEQGFKNVGFIGARGNHSTLQRQLHGWQS 144 (275)
T ss_dssp H-HHHHHHHHHTCCEEEESSSCS---S---SSSEEECBCHHHHHHHHHHHHHTTTCCCEEEEECSCSSHHHHHHHHHHHH
T ss_pred H-HHHHHHHhCCCCEEEEeeccC---C---CCCCEEEEChHHHHHHHHHHHHHCCCCeEEEEcCCCCCchHHHHHHHHHH
Confidence 2 223344557999998643221 1 234457778888888899988888999999998543 344566788999
Q ss_pred HHhhcceEEEEEeecCCCCCCChhhHHHHHHHHhcC--CceEEEEEeChhhHHHHHHHHHHcCCCCCCeEEEE
Q 002309 187 KLAERRCRISYKSGIPPESGVNTGYVMDLLVKVALM--ESRVIVLHVSPSLGFQVFSVAKYLGMMGNGYVWIA 257 (938)
Q Consensus 187 ~l~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~lk~~--~~~viv~~~~~~~~~~~l~~a~~~g~~~~~~~wi~ 257 (938)
++++.|+.+.....+... .+..+....+.++-+. .+++|+. .+...+..+++++++.|+..++-+.+.
T Consensus 145 ~l~~~g~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~ai~~-~~d~~a~g~~~al~~~g~~vP~di~vv 214 (275)
T 3d8u_A 145 AMIENYLTPDHFLTTHEA--PSSQLGAEGLAKLLLRDSSLNALVC-SHEEIAIGALFECHRRVLKVPTDIAII 214 (275)
T ss_dssp HHHHTTCCCCCEEECSSC--CCHHHHHHHHHHHHTTCTTCCEEEE-SSHHHHHHHHHHHHHTTCCTTTTCEEE
T ss_pred HHHHcCCCCCccEEEeCC--CChhHHHHHHHHHHhCCCCCCEEEE-cCcHHHHHHHHHHHHcCCCCCCceEEE
Confidence 999998754322222211 2244444555555433 4666554 455667889999999998655434333
No 108
>8abp_A L-arabinose-binding protein; binding proteins; HET: GLA GAL; 1.49A {Escherichia coli} SCOP: c.93.1.1 PDB: 7abp_A* 6abp_A* 1abe_A* 1abf_A* 5abp_A* 1bap_A* 1apb_A* 9abp_A* 2wrz_A
Probab=97.82 E-value=0.00081 Score=71.35 Aligned_cols=213 Identities=8% Similarity=0.003 Sum_probs=130.2
Q ss_pred eEEEEEEeeCC-CcchhHHHHHHHHHHHHHhcCCCCCCCCEEEEEEccCCCChHHHHHHHHHHHhcCcEEEE-cCCChhH
Q 002309 31 VVNVGALFTLD-STIGRVAKIAIEEAVKDVNSNSSILHGTKLNITMQSSNCSGFIGMVEALRFMETDIVAII-GPQCSTV 108 (938)
Q Consensus 31 ~i~IG~i~~~~-~~~g~~~~~a~~~Av~~iN~~~~il~g~~l~~~~~D~~~~~~~a~~~a~~li~~~V~avi-Gp~~s~~ 108 (938)
+++||++.|.. .++-.....+++.+.++. |+++ .+.++ .++..-.+....++.++|.+|| .|.....
T Consensus 2 ~~~Ig~i~~~~~~~~~~~~~~gi~~~a~~~--------g~~~--~~~~~-~~~~~~~~~i~~l~~~~vdgiii~~~~~~~ 70 (306)
T 8abp_A 2 NLKLGFLVKQPEEPWFQTEWKFADKAGKDL--------GFEV--IKIAV-PDGEKTLNAIDSLAASGAKGFVICTPDPKL 70 (306)
T ss_dssp CEEEEEEESCTTSHHHHHHHHHHHHHHHHH--------TEEE--EEEEC-CSHHHHHHHHHHHHHTTCCEEEEECSCGGG
T ss_pred CeEEEEEeCCCCchHHHHHHHHHHHHHHHc--------CCEE--EEeCC-CCHHHHHHHHHHHHHcCCCEEEEeCCCchh
Confidence 68999999865 444445667777766665 3444 45566 4777777777888888888775 4555545
Q ss_pred HHHHHHhhccCCccEEEcccCCCCCCCCCCCceEEecCCchHHHHHHHHHHH-hcCCc-----EEEEEE-EcC--ccccc
Q 002309 109 AHIVSYVSNELQVPLLSFGVTDPTLSSLQYPFFVRTTQSDSYQMTAVAEMVS-YYGWN-----AVSVIF-VDN--EYGRN 179 (938)
Q Consensus 109 ~~~va~~~~~~~iP~Is~~~~~~~l~~~~~p~~~r~~ps~~~~~~ai~~~l~-~~~w~-----~vaii~-~d~--~~g~~ 179 (938)
.......+...++|+|......+.......+.+..+..++...+...++++. ..+-+ +++++. ... .....
T Consensus 71 ~~~~~~~~~~~~iPvV~~~~~~~~~~~~~~~~~~~V~~D~~~~g~~a~~~l~~~~g~~~~~~~~i~~~~~~~~~~~~~~~ 150 (306)
T 8abp_A 71 GSAIVAKARGYDMKVIAVDDQFVNAKGKPMDTVPLVMLAATKIGERQGQELYKEMQKRGWDVKESAVMAITANELDTARR 150 (306)
T ss_dssp HHHHHHHHHHTTCEEEEESSCCBCTTSCBCTTSCEEEECHHHHHHHHHHHHHHHHHHHTCCGGGEEEEEEECTTSHHHHH
T ss_pred hHHHHHHHHHCCCcEEEeCCCCCCccccccccccEEecChhHHHHHHHHHHHHHHHhcCCCccceEEEEecCCCChHHHH
Confidence 5555556777899999875432222111112344566677777777777654 33433 888886 322 33456
Q ss_pred hHHHHHHHHhhcce---EEEEEeecCCCCCCChhhHHHHHHHHhcC--CceE-EEEEeChhhHHHHHHHHHHcCCCCCCe
Q 002309 180 GVSALNDKLAERRC---RISYKSGIPPESGVNTGYVMDLLVKVALM--ESRV-IVLHVSPSLGFQVFSVAKYLGMMGNGY 253 (938)
Q Consensus 180 ~~~~l~~~l~~~g~---~v~~~~~~~~~~~~~~~d~~~~l~~lk~~--~~~v-iv~~~~~~~~~~~l~~a~~~g~~~~~~ 253 (938)
..+.+.+++++.|. ++..... . . .+.+.....++++-+. +++. +|++++...+..+++++++.|+...+.
T Consensus 151 R~~Gf~~~l~~~g~~~~~~~~~~~-~-~--~~~~~~~~~~~~~l~~~~~~~a~~i~~~nD~~A~g~~~al~~~g~~v~di 226 (306)
T 8abp_A 151 RTTGSMDALKAAGFPEKQIYQVPT-K-S--NDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRATEGQGFKAADI 226 (306)
T ss_dssp HHHHHHHHHHHHTCCGGGEEEEEC-S-S--SSHHHHHHHHHHHHTTCTTCSEEEEECSSHHHHHHHHHHHHHTTCCGGGE
T ss_pred HHHHHHHHHHhcCCCCcEEEeecc-C-C--CChHHHHHHHHHHHHhCCCCceEEEEeCCcHHHHHHHHHHHHcCCCCCce
Confidence 67889999998774 2332221 1 1 2244555556655544 3455 345556667788999999999864233
Q ss_pred EEEEe
Q 002309 254 VWIAT 258 (938)
Q Consensus 254 ~wi~~ 258 (938)
..++.
T Consensus 227 ~vvG~ 231 (306)
T 8abp_A 227 IGIGI 231 (306)
T ss_dssp EEEEE
T ss_pred EEEEe
Confidence 34443
No 109
>3o74_A Fructose transport system repressor FRUR; dual transcriptional regulator, DNA, transcription; 2.00A {Pseudomonas putida} PDB: 3o75_A*
Probab=97.82 E-value=0.00042 Score=72.15 Aligned_cols=204 Identities=11% Similarity=0.025 Sum_probs=129.6
Q ss_pred EEEEEEeeCC-CcchhHHHHHHHHHHHHHhcCCCCCCCCEEEEEEccCCCChHHHHHHHHHHHhcCcEEEEcCCChhHHH
Q 002309 32 VNVGALFTLD-STIGRVAKIAIEEAVKDVNSNSSILHGTKLNITMQSSNCSGFIGMVEALRFMETDIVAIIGPQCSTVAH 110 (938)
Q Consensus 32 i~IG~i~~~~-~~~g~~~~~a~~~Av~~iN~~~~il~g~~l~~~~~D~~~~~~~a~~~a~~li~~~V~aviGp~~s~~~~ 110 (938)
-+||+++|.. .++-.....+++-+.++. |+++.+ .++..++....+....++.+++.+||-........
T Consensus 3 ~~Igvi~~~~~~~~~~~~~~gi~~~a~~~--------g~~~~~--~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~~~~ 72 (272)
T 3o74_A 3 RTLGFILPDLENPSYARIAKQLEQGARAR--------GYQLLI--ASSDDQPDSERQLQQLFRARRCDALFVASCLPPED 72 (272)
T ss_dssp CEEEEEESCTTCHHHHHHHHHHHHHHHHT--------TCEEEE--EECTTCHHHHHHHHHHHHHTTCSEEEECCCCCSSC
T ss_pred eEEEEEeCCCcChhHHHHHHHHHHHHHHC--------CCEEEE--EeCCCCHHHHHHHHHHHHHcCCCEEEEecCccccH
Confidence 4799999875 333334555555555442 455544 55666777766777777788888776422221123
Q ss_pred HHHHhhccCCccEEEcccCCCCCCCCCCCceEEecCCchHHHHHHHHHHHhcCCcEEEEEEEcC--ccccchHHHHHHHH
Q 002309 111 IVSYVSNELQVPLLSFGVTDPTLSSLQYPFFVRTTQSDSYQMTAVAEMVSYYGWNAVSVIFVDN--EYGRNGVSALNDKL 188 (938)
Q Consensus 111 ~va~~~~~~~iP~Is~~~~~~~l~~~~~p~~~r~~ps~~~~~~ai~~~l~~~~w~~vaii~~d~--~~g~~~~~~l~~~l 188 (938)
.....+...++|+|......+. +.+-.+..++...+..+++++...|.++++++..+. .......+.+.+++
T Consensus 73 ~~~~~~~~~~iPvV~~~~~~~~------~~~~~V~~d~~~~~~~a~~~L~~~G~~~i~~i~~~~~~~~~~~R~~gf~~~l 146 (272)
T 3o74_A 73 DSYRELQDKGLPVIAIDRRLDP------AHFCSVISDDRDASRQLAASLLSSAPRSIALIGARPELSVSQARAGGFDEAL 146 (272)
T ss_dssp CHHHHHHHTTCCEEEESSCCCT------TTCEEEEECHHHHHHHHHHHHHTTCCSEEEEEEECTTSHHHHHHHHHHHHHT
T ss_pred HHHHHHHHcCCCEEEEccCCCc------cccCEEEEchHHHHHHHHHHHHHCCCcEEEEEecCCCCccHHHHHHHHHHHH
Confidence 3344566679999986543221 123446678888889999999889999999998643 34556778999999
Q ss_pred hhcceEEEEEeecCCCCCCChhhHHHHHHHHhc--C-CceEEEEEeChhhHHHHHHHHHHcCCCCCC-eEEEE
Q 002309 189 AERRCRISYKSGIPPESGVNTGYVMDLLVKVAL--M-ESRVIVLHVSPSLGFQVFSVAKYLGMMGNG-YVWIA 257 (938)
Q Consensus 189 ~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~lk~--~-~~~viv~~~~~~~~~~~l~~a~~~g~~~~~-~~wi~ 257 (938)
++.|+++.....-. .+.++....+.++-+ . .++.|+. .+...+..+++++++.|+ .++ ...++
T Consensus 147 ~~~~~~~~~~~~~~----~~~~~~~~~~~~~l~~~~~~~~ai~~-~~d~~a~g~~~al~~~g~-vp~di~vvg 213 (272)
T 3o74_A 147 QGYTGEVRRYQGEA----FSRECGQRLMQQLIDDLGGLPDALVT-TSYVLLQGVFDTLQARPV-DSRQLQLGT 213 (272)
T ss_dssp TTCCSEEEEEEESS----SSHHHHHHHHHHHHHHHTSCCSEEEE-SSHHHHHHHHHHHHTSCG-GGCCCEEEE
T ss_pred HHcCCChheeecCC----CCHHHHHHHHHHHHhcCCCCCcEEEE-eCchHHHHHHHHHHHcCC-CccceEEEE
Confidence 99998765432222 124444444554433 2 4676544 556678889999999998 443 34444
No 110
>2o20_A Catabolite control protein A; CCPA, transcriptional regulator, helix-turn-helix, transcrip; 1.90A {Lactococcus lactis}
Probab=97.81 E-value=0.00044 Score=74.49 Aligned_cols=208 Identities=10% Similarity=0.008 Sum_probs=128.2
Q ss_pred eeEEEEEEeeCC-CcchhHHHHHHHHHHHHHhcCCCCCCCCEEEEEEccCCCChHHHHHHHHHHHhcCcEEEEcCCChhH
Q 002309 30 AVVNVGALFTLD-STIGRVAKIAIEEAVKDVNSNSSILHGTKLNITMQSSNCSGFIGMVEALRFMETDIVAIIGPQCSTV 108 (938)
Q Consensus 30 ~~i~IG~i~~~~-~~~g~~~~~a~~~Av~~iN~~~~il~g~~l~~~~~D~~~~~~~a~~~a~~li~~~V~aviGp~~s~~ 108 (938)
...+||++.|.. .++......+++.+.++. |+.+.+ .++..++.........++.++|.+||.......
T Consensus 62 ~~~~Ig~i~~~~~~~~~~~~~~gi~~~~~~~--------g~~~~~--~~~~~~~~~~~~~~~~l~~~~vdgiI~~~~~~~ 131 (332)
T 2o20_A 62 RTTTVGVILPTITSTYFAAITRGVDDIASMY--------KYNMIL--ANSDNDVEKEEKVLETFLSKQVDGIVYMGSSLD 131 (332)
T ss_dssp CCCEEEEEESCTTCHHHHHHHHHHHHHHHHT--------TCEEEE--EECTTCHHHHHHHHHHHHHTTCSEEEECSSCCC
T ss_pred CCCEEEEEeCCCCCcHHHHHHHHHHHHHHHc--------CCEEEE--EECCCChHHHHHHHHHHHhCCCCEEEEeCCCCC
Confidence 357899999853 434345556666555542 555544 466667766666666777778988775332211
Q ss_pred HHHHHHhhccCCccEEEcccCCCCCCCCCCCceEEecCCchHHHHHHHHHHHhcCCcEEEEEEEcC--ccccchHHHHHH
Q 002309 109 AHIVSYVSNELQVPLLSFGVTDPTLSSLQYPFFVRTTQSDSYQMTAVAEMVSYYGWNAVSVIFVDN--EYGRNGVSALND 186 (938)
Q Consensus 109 ~~~va~~~~~~~iP~Is~~~~~~~l~~~~~p~~~r~~ps~~~~~~ai~~~l~~~~w~~vaii~~d~--~~g~~~~~~l~~ 186 (938)
...+. .+...++|+|......+ + +.+..+..++...+...++++...|.++|++|..+. .......+.+.+
T Consensus 132 ~~~~~-~l~~~~iPvV~~~~~~~---~---~~~~~V~~D~~~~~~~a~~~L~~~G~~~I~~i~~~~~~~~~~~R~~Gf~~ 204 (332)
T 2o20_A 132 EKIRT-SLKNSRTPVVLVGTIDG---D---KEIPSVNIDYHLAAYQSTKKLIDSGNKKIAYIMGSLKDVENTERMVGYQE 204 (332)
T ss_dssp HHHHH-HHHHHCCCEEEESCCCT---T---SCSCEEECCHHHHHHHHHHHHHHTTCSSEEEECSCTTSHHHHHHHHHHHH
T ss_pred HHHHH-HHHhCCCCEEEEccccC---C---CCCCEEEeChHHHHHHHHHHHHHCCCCeEEEEeCCcccccHHHHHHHHHH
Confidence 22233 33456999998754322 1 223346677777788888988888999999998543 334566788999
Q ss_pred HHhhcceEEEEEeecCCCCCCChhhHHHHHHHHhcCCceEEEEEeChhhHHHHHHHHHHcCCCCCCeEEEE
Q 002309 187 KLAERRCRISYKSGIPPESGVNTGYVMDLLVKVALMESRVIVLHVSPSLGFQVFSVAKYLGMMGNGYVWIA 257 (938)
Q Consensus 187 ~l~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~lk~~~~~viv~~~~~~~~~~~l~~a~~~g~~~~~~~wi~ 257 (938)
++++.|+.+.....+... .+..+-...+.++-+..+++|+. .+...+..+++++++.|+..++-+-+.
T Consensus 205 al~~~g~~~~~~~~~~~~--~~~~~~~~~~~~ll~~~~~ai~~-~~d~~A~g~~~al~~~G~~vP~disvi 272 (332)
T 2o20_A 205 ALLEANIEFDENLVFEGN--YSYEQGKALAERLLERGATSAVV-SHDTVAVGLLSAMMDKGVKVPEDFEII 272 (332)
T ss_dssp HHHHTTCCCCGGGEECSC--CSHHHHHHHHHHHHHTTCCEEEE-SCHHHHHHHHHHHHHTTCCTTTTCEEE
T ss_pred HHHHcCCCCChhhEEeCC--CCHHHHHHHHHHHhccCCCEEEE-CChHHHHHHHHHHHHcCCCCccCEEEE
Confidence 999999764321111211 12333334444443337887665 455677789999999998655434343
No 111
>1jx6_A LUXP protein; protein-ligand complex, signaling protein; HET: AI2; 1.50A {Vibrio harveyi} SCOP: c.93.1.1 PDB: 1zhh_A* 2hj9_A*
Probab=97.77 E-value=0.00076 Score=72.92 Aligned_cols=208 Identities=7% Similarity=-0.023 Sum_probs=125.9
Q ss_pred CCeeEEEEEEeeC--CCcchhHHHHHHHHHHHHHhcCCCCCCCCEEEEEEccCC--CChHHHHHHHHHHHhcCcEEEEcC
Q 002309 28 RPAVVNVGALFTL--DSTIGRVAKIAIEEAVKDVNSNSSILHGTKLNITMQSSN--CSGFIGMVEALRFMETDIVAIIGP 103 (938)
Q Consensus 28 ~~~~i~IG~i~~~--~~~~g~~~~~a~~~Av~~iN~~~~il~g~~l~~~~~D~~--~~~~~a~~~a~~li~~~V~aviGp 103 (938)
...+.+||++.|. +.++-.....+++.+.++. |+++.+...++. .++..-......++.++|.+||-+
T Consensus 40 ~~~~~~Igvi~~~~~~~~~~~~~~~gi~~~a~~~--------g~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiIi~ 111 (342)
T 1jx6_A 40 TQRPIKISVVYPGQQVSDYWVRNIASFEKRLYKL--------NINYQLNQVFTRPNADIKQQSLSLMEALKSKSDYLIFT 111 (342)
T ss_dssp CSSCEEEEEEECCCSSCCHHHHHHHHHHHHHHHT--------TCCEEEEEEECCTTCCHHHHHHHHHHHHHTTCSEEEEC
T ss_pred cCCceEEEEEecCCcccHHHHHHHHHHHHHHHHc--------CCeEEEEecCCCCccCHHHHHHHHHHHHhcCCCEEEEe
Confidence 4457899999996 4444344555655554432 456666655555 577666666777778888888765
Q ss_pred CChhHHHHHHHhhccCCccEEEcccC-CCCCCCCCCCceEEecCCchHHHHHHHHHHHh-cC-CcEEEEEEEcCc-cccc
Q 002309 104 QCSTVAHIVSYVSNELQVPLLSFGVT-DPTLSSLQYPFFVRTTQSDSYQMTAVAEMVSY-YG-WNAVSVIFVDNE-YGRN 179 (938)
Q Consensus 104 ~~s~~~~~va~~~~~~~iP~Is~~~~-~~~l~~~~~p~~~r~~ps~~~~~~ai~~~l~~-~~-w~~vaii~~d~~-~g~~ 179 (938)
............+...++|+|..... .|.......+.+..+.+++...+..+++++.. .| .++|++|..... ....
T Consensus 112 ~~~~~~~~~~~~~~~~~ip~V~~~~~~~~~~~~~~~~~~~~V~~D~~~~g~~a~~~L~~~~Gg~~~I~~i~~~~~~~~~~ 191 (342)
T 1jx6_A 112 LDTTRHRKFVEHVLDSTNTKLILQNITTPVREWDKHQPFLYVGFDHAEGSRELATEFGKFFPKHTYYSVLYFSEGYISDV 191 (342)
T ss_dssp CSSSTTHHHHHHHHHHCSCEEEEETCCSCBGGGTTSCCSEEEECCHHHHHHHHHHHHHHHSCTTCEEEEECCSTTHHHHH
T ss_pred CChHhHHHHHHHHHHcCCCEEEEecCCCcccccccCCCceEEecCcHHHHHHHHHHHHHHcCCCceEEEEEcCCcchhhH
Confidence 54432222233345568999876222 22110011233445777888888888998776 47 999999975432 3445
Q ss_pred hHHHHHHHHhhcce-EEEEEeecCCCCCCChhhHHHHHHHHhc--CCceEEEEEeChhhHHHHHHHHHHcCC
Q 002309 180 GVSALNDKLAERRC-RISYKSGIPPESGVNTGYVMDLLVKVAL--MESRVIVLHVSPSLGFQVFSVAKYLGM 248 (938)
Q Consensus 180 ~~~~l~~~l~~~g~-~v~~~~~~~~~~~~~~~d~~~~l~~lk~--~~~~viv~~~~~~~~~~~l~~a~~~g~ 248 (938)
..+.+.+++++.|. .+.. .+... .+..+....+.++-+ .++++|+ +.+...+..+++++++.|+
T Consensus 192 R~~Gf~~~l~~~~~~~~~~--~~~~~--~~~~~~~~~~~~~l~~~~~~~ai~-~~nd~~A~g~~~al~~~g~ 258 (342)
T 1jx6_A 192 RGDTFIHQVNRDNNFELQS--AYYTK--ATKQSGYDAAKASLAKHPDVDFIY-ACSTDVALGAVDALAELGR 258 (342)
T ss_dssp HHHHHHHHHHHHHCCEEEE--EECCC--SSHHHHHHHHHHHHHHCCCCSEEE-ESSHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHhCCCcEEEE--EecCC--CCHHHHHHHHHHHHHhCCCccEEE-ECCChhHHHHHHHHHHcCC
Confidence 66788899998886 3322 22222 223334444454433 3466655 4455667888999999997
No 112
>2hsg_A Glucose-resistance amylase regulator; CCPA, transcriptional regulator, transcription regulator; 2.50A {Bacillus megaterium} SCOP: a.35.1.5 c.93.1.1 PDB: 1rzr_G 2jcg_A 1zvv_A 3oqo_A* 3oqm_A* 3oqn_A*
Probab=97.75 E-value=0.00028 Score=76.02 Aligned_cols=204 Identities=9% Similarity=0.001 Sum_probs=126.2
Q ss_pred CeeEEEEEEeeC-CCcchhHHHHHHHHHHHHHhcCCCCCCCCEEEEEEccCCCChHHHHHHHHHHHhcCcEEEEcCCChh
Q 002309 29 PAVVNVGALFTL-DSTIGRVAKIAIEEAVKDVNSNSSILHGTKLNITMQSSNCSGFIGMVEALRFMETDIVAIIGPQCST 107 (938)
Q Consensus 29 ~~~i~IG~i~~~-~~~~g~~~~~a~~~Av~~iN~~~~il~g~~l~~~~~D~~~~~~~a~~~a~~li~~~V~aviGp~~s~ 107 (938)
....+||++.|. +.++......+++.+.++. |+.+.+ .++..++.........++.++|.+||......
T Consensus 58 ~~~~~Ig~i~~~~~~~~~~~~~~gi~~~a~~~--------g~~~~~--~~~~~~~~~~~~~~~~l~~~~vdgiI~~~~~~ 127 (332)
T 2hsg_A 58 KKTTTVGVIIPDISNIFYAELARGIEDIATMY--------KYNIIL--SNSDQNQDKELHLLNNMLGKQVDGIIFMSGNV 127 (332)
T ss_dssp C-CCEEEEEEC--CCSHHHHHHHHHHHHHHHH--------TCEEEE--EECCSHHHHHHHHHHHTSCCSSCCEEECCSSC
T ss_pred CCCCEEEEEeCCCCCcHHHHHHHHHHHHHHHc--------CCEEEE--EeCCCChHHHHHHHHHHHhCCCcEEEEecCCC
Confidence 346789999985 3444455667777666653 455544 45555655555555666667888776433222
Q ss_pred HHHHHHHhhccCCccEEEcccCCCCCCCCCCCceEEecCCchHHHHHHHHHHHhcCCcEEEEEEEcC---ccccchHHHH
Q 002309 108 VAHIVSYVSNELQVPLLSFGVTDPTLSSLQYPFFVRTTQSDSYQMTAVAEMVSYYGWNAVSVIFVDN---EYGRNGVSAL 184 (938)
Q Consensus 108 ~~~~va~~~~~~~iP~Is~~~~~~~l~~~~~p~~~r~~ps~~~~~~ai~~~l~~~~w~~vaii~~d~---~~g~~~~~~l 184 (938)
.... ...+...++|+|......+ + +.+..+..++...+..+++++...|.++|++|..+. .......+.+
T Consensus 128 ~~~~-~~~l~~~~iPvV~~~~~~~---~---~~~~~V~~D~~~~~~~a~~~L~~~G~~~I~~i~~~~~~~~~~~~R~~Gf 200 (332)
T 2hsg_A 128 TEEH-VEELKKSPVPVVLAASIES---T---NQIPSVTIDYEQAAFDAVQSLIDSGHKNIAFVSGTLEEPINHAKKVKGY 200 (332)
T ss_dssp CHHH-HHHHTTSSSCEEEESCCCS---C---TTSCEEEECHHHHHHHHHHHHHTTTCSCEEEEESCTTSHHHHTTHHHHH
T ss_pred CHHH-HHHHHhCCCCEEEEccccC---C---CCCCEEEEChHHHHHHHHHHHHHCCCCEEEEEeCCcccCccHHHHHHHH
Confidence 2223 3345567999998754322 1 223346677777788888988888999999998543 3356678899
Q ss_pred HHHHhhcceEEEEEeecCCCCCCChhhHHHHHHHHhcC--CceEEEEEeChhhHHHHHHHHHHcCCCCCC
Q 002309 185 NDKLAERRCRISYKSGIPPESGVNTGYVMDLLVKVALM--ESRVIVLHVSPSLGFQVFSVAKYLGMMGNG 252 (938)
Q Consensus 185 ~~~l~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~lk~~--~~~viv~~~~~~~~~~~l~~a~~~g~~~~~ 252 (938)
.+++++.|+.+.....+... .+..+-...+.++-+. .+++|+ +.+...+..+++++++.|+..++
T Consensus 201 ~~al~~~g~~~~~~~~~~~~--~~~~~~~~~~~~ll~~~~~~~ai~-~~nd~~A~g~~~al~~~G~~vP~ 267 (332)
T 2hsg_A 201 KRALTESGLPVRDSYIVEGD--YTYDSGIEAVEKLLEEDEKPTAIF-VGTDEMALGVIHGAQDRGLNVPN 267 (332)
T ss_dssp HHHHHTTTCCCCGGGEEECC--SSHHHHHHHHHHHHHSSSCCSEEE-ESSHHHHHHHHHHHHHTTCCHHH
T ss_pred HHHHHHcCCCCChheEEeCC--CCHHHHHHHHHHHHcCCCCCeEEE-ECChHHHHHHHHHHHHcCCCCCC
Confidence 99999999764311111111 1233344455555433 467766 45566778899999999986443
No 113
>2rgy_A Transcriptional regulator, LACI family; 11011J, NYSGXRC, transctiptional regulator, SUG binding protein, structural genomics, PSI-2; 2.05A {Burkholderia phymatum}
Probab=97.74 E-value=0.00027 Score=74.51 Aligned_cols=203 Identities=7% Similarity=-0.051 Sum_probs=123.1
Q ss_pred eeEEEEEEeeCC-CcchhHHHHHHHHHHHHHhcCCCCCCCCEEEEEEccCCCChHHHHH---HHHHHHhcCcEEEEcCCC
Q 002309 30 AVVNVGALFTLD-STIGRVAKIAIEEAVKDVNSNSSILHGTKLNITMQSSNCSGFIGMV---EALRFMETDIVAIIGPQC 105 (938)
Q Consensus 30 ~~i~IG~i~~~~-~~~g~~~~~a~~~Av~~iN~~~~il~g~~l~~~~~D~~~~~~~a~~---~a~~li~~~V~aviGp~~ 105 (938)
.+.+||++.|.. .++-.....+++.+.++. |+++.+ .++..++....+ ....++.++|.+||-...
T Consensus 7 ~~~~Ig~i~~~~~~~~~~~~~~gi~~~a~~~--------g~~~~~--~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~ 76 (290)
T 2rgy_A 7 QLGIIGLFVPTFFGSYYGTILKQTDLELRAV--------HRHVVV--ATGCGESTPREQALEAVRFLIGRDCDGVVVISH 76 (290)
T ss_dssp -CCEEEEECSCSCSHHHHHHHHHHHHHHHHT--------TCEEEE--ECCCSSSCHHHHHHHHHHHHHHTTCSEEEECCS
T ss_pred CCCeEEEEeCCCCCchHHHHHHHHHHHHHHC--------CCEEEE--EeCCCchhhhhhHHHHHHHHHhcCccEEEEecC
Confidence 456899999864 333344556666555542 455544 455555555444 556677778888775332
Q ss_pred hhHHHHHHHhhccCCccEEEcccCCCCCCCCCCCceEEecCCchHHHHHHHHHHHhcCCcEEEEEEEcC--ccccchHHH
Q 002309 106 STVAHIVSYVSNELQVPLLSFGVTDPTLSSLQYPFFVRTTQSDSYQMTAVAEMVSYYGWNAVSVIFVDN--EYGRNGVSA 183 (938)
Q Consensus 106 s~~~~~va~~~~~~~iP~Is~~~~~~~l~~~~~p~~~r~~ps~~~~~~ai~~~l~~~~w~~vaii~~d~--~~g~~~~~~ 183 (938)
......+ ..+...++|+|......+. +.+..+..++...+..+++++...|.++|++|..+. .........
T Consensus 77 ~~~~~~~-~~l~~~~iPvV~~~~~~~~------~~~~~V~~D~~~~g~~a~~~L~~~G~~~I~~i~~~~~~~~~~~R~~G 149 (290)
T 2rgy_A 77 DLHDEDL-DELHRMHPKMVFLNRAFDA------LPDASFCPDHRRGGELAAATLIEHGHRKLAVISGPFTASDNVERLDG 149 (290)
T ss_dssp SSCHHHH-HHHHHHCSSEEEESSCCTT------SGGGEECCCHHHHHHHHHHHHHHTTCCSEEEEESCTTCHHHHHHHHH
T ss_pred CCCHHHH-HHHhhcCCCEEEEccccCC------CCCCEEEeCcHHHHHHHHHHHHHCCCceEEEEeCCCCCccHHHHHHH
Confidence 2222223 3344579999987543221 223356677888888889988888999999998543 334566788
Q ss_pred HHHHHhhcceEEEEEeecCCCCCCChhhHHHHHHHHhc--CCceEEEEEeChhhHHHHHHHHHHcCCCCCC
Q 002309 184 LNDKLAERRCRISYKSGIPPESGVNTGYVMDLLVKVAL--MESRVIVLHVSPSLGFQVFSVAKYLGMMGNG 252 (938)
Q Consensus 184 l~~~l~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~lk~--~~~~viv~~~~~~~~~~~l~~a~~~g~~~~~ 252 (938)
+.+++++.|+.+.....+... .+..+....+.++-+ ..+++|+ +.+...+..+++++++.|+..++
T Consensus 150 f~~al~~~g~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~ai~-~~~d~~A~g~~~al~~~G~~vP~ 217 (290)
T 2rgy_A 150 FFDELARHGIARDSVPLIESD--FSPEGGYAATCQLLESKAPFTGLF-CANDTMAVSALARFQQLGISVPG 217 (290)
T ss_dssp HHHHHHTTTCCGGGSCEEECC--SSHHHHHHHHHHHHHHTCCCSEEE-ESSHHHHHHHHHHHHHTTCCTTT
T ss_pred HHHHHHHcCCCCCcccEEecC--CChhHHHHHHHHHHhCCCCCcEEE-ECCcHHHHHHHHHHHHcCCCCCC
Confidence 999999988654211111111 123333344444432 3567766 45556678899999999986544
No 114
>3bbl_A Regulatory protein of LACI family; protein structure initiative II, PSI-II, NYSGXRC, transcript regulator, periplasmic binding protein; 2.35A {Chloroflexus aggregans}
Probab=97.73 E-value=0.00031 Score=73.86 Aligned_cols=202 Identities=8% Similarity=0.009 Sum_probs=123.8
Q ss_pred eEEEEEEeeC-----CCcchhHHHHHHHHHHHHHhcCCCCCCCCEEEEEEccCCCChHHHHHHHHHHHhcCcEEEEcCCC
Q 002309 31 VVNVGALFTL-----DSTIGRVAKIAIEEAVKDVNSNSSILHGTKLNITMQSSNCSGFIGMVEALRFMETDIVAIIGPQC 105 (938)
Q Consensus 31 ~i~IG~i~~~-----~~~~g~~~~~a~~~Av~~iN~~~~il~g~~l~~~~~D~~~~~~~a~~~a~~li~~~V~aviGp~~ 105 (938)
+-+||++.|. +.++-.....+++.+.++. |+++. +.++..++....+....++.++|.+||-...
T Consensus 4 s~~Ig~i~~~~~~~~~~~~~~~~~~gi~~~a~~~--------g~~~~--~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~ 73 (287)
T 3bbl_A 4 SFMIGYSWTQTEPGQVNHILDQFLSSMVREAGAV--------NYFVL--PFPFSEDRSQIDIYRDLIRSGNVDGFVLSSI 73 (287)
T ss_dssp CCEEEECCCCCCTTCSCCTHHHHHHHHHHHHHHT--------TCEEE--ECCCCSSTTCCHHHHHHHHTTCCSEEEECSC
T ss_pred eeEEEEEecccccccCChhHHHHHHHHHHHHHHc--------CCEEE--EEeCCCchHHHHHHHHHHHcCCCCEEEEeec
Confidence 3579999986 4444445666666666542 45554 3555555544445556677778888774322
Q ss_pred hhHHHHHHHhhccCCccEEEcccCCCCCCCCCCCceEEecCCchHHHHHHHHHHHhcCCcEEEEEEEcC--ccccchHHH
Q 002309 106 STVAHIVSYVSNELQVPLLSFGVTDPTLSSLQYPFFVRTTQSDSYQMTAVAEMVSYYGWNAVSVIFVDN--EYGRNGVSA 183 (938)
Q Consensus 106 s~~~~~va~~~~~~~iP~Is~~~~~~~l~~~~~p~~~r~~ps~~~~~~ai~~~l~~~~w~~vaii~~d~--~~g~~~~~~ 183 (938)
..... ....+...++|+|......+ . +.+..+..++...+..+++++...|.++|++|.... .......+.
T Consensus 74 ~~~~~-~~~~l~~~~iPvV~~~~~~~---~---~~~~~V~~D~~~~g~~a~~~L~~~G~~~I~~i~~~~~~~~~~~R~~G 146 (287)
T 3bbl_A 74 NYNDP-RVQFLLKQKFPFVAFGRSNP---D---WDFAWVDIDGTAGTRQAVEYLIGRGHRRIAILAWPEDSRVGNDRLQG 146 (287)
T ss_dssp CTTCH-HHHHHHHTTCCEEEESCCST---T---CCCCEEEECHHHHHHHHHHHHHHHTCCCEEEEECCTTCHHHHHHHHH
T ss_pred CCCcH-HHHHHHhcCCCEEEECCcCC---C---CCCCEEEeccHHHHHHHHHHHHHCCCCeEEEEeCCcccccHHHHHHH
Confidence 21112 23344567999998754322 1 123346677778888888988878999999998543 234566788
Q ss_pred HHHHHhhcceEEEEEeecCCCCCCChhhHHHHHHHHhc-C---CceEEEEEeChhhHHHHHHHHHHcCCCCCC
Q 002309 184 LNDKLAERRCRISYKSGIPPESGVNTGYVMDLLVKVAL-M---ESRVIVLHVSPSLGFQVFSVAKYLGMMGNG 252 (938)
Q Consensus 184 l~~~l~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~lk~-~---~~~viv~~~~~~~~~~~l~~a~~~g~~~~~ 252 (938)
+.+++++.|+.+.....+... .+..+....++++-+ . ++++|+. .+...+..+++++++.|+..++
T Consensus 147 f~~~l~~~g~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~ai~~-~~d~~a~g~~~al~~~G~~vP~ 216 (287)
T 3bbl_A 147 YLEAMQTAQLPIETGYILRGE--GTFEVGRAMTLHLLDLSPERRPTAIMT-LNDTMAIGAMAAARERGLTIGT 216 (287)
T ss_dssp HHHHHHHTTCCCCGGGEEECC--SSHHHHHHHHHHHHTSCTTTSCSEEEE-SSHHHHHHHHHHHHHTTCCBTT
T ss_pred HHHHHHHcCCCCChhhEEeCC--CCHHHHHHHHHHHHhhCCCCCCcEEEE-CCcHHHHHHHHHHHHcCCCCCC
Confidence 999999998764321111111 123444455555544 3 4666554 4556678899999999986544
No 115
>3egc_A Putative ribose operon repressor; structural genomics, unknown function, DNA-binding, transcri transcription regulation, PSI-2; 2.35A {Burkholderia thailandensis}
Probab=97.73 E-value=0.00025 Score=74.79 Aligned_cols=207 Identities=11% Similarity=0.029 Sum_probs=128.4
Q ss_pred eeEEEEEEeeCC-CcchhHHHHHHHHHHHHHhcCCCCCCCCEEEEEEccCCCChHHHHHHHHHHHhcCcEEEEcCCChhH
Q 002309 30 AVVNVGALFTLD-STIGRVAKIAIEEAVKDVNSNSSILHGTKLNITMQSSNCSGFIGMVEALRFMETDIVAIIGPQCSTV 108 (938)
Q Consensus 30 ~~i~IG~i~~~~-~~~g~~~~~a~~~Av~~iN~~~~il~g~~l~~~~~D~~~~~~~a~~~a~~li~~~V~aviGp~~s~~ 108 (938)
..-+||+++|.. ..+-.....+++.+.++. |+.+. +.++..++....+....++.++|.+||-.....
T Consensus 7 ~~~~Igvv~~~~~~~~~~~~~~gi~~~a~~~--------g~~~~--~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~- 75 (291)
T 3egc_A 7 RSNVVGLIVSDIENVFFAEVASGVESEARHK--------GYSVL--LANTAEDIVREREAVGQFFERRVDGLILAPSEG- 75 (291)
T ss_dssp CCCEEEEEESCTTSHHHHHHHHHHHHHHHHT--------TCEEE--EEECTTCHHHHHHHHHHHHHTTCSEEEECCCSS-
T ss_pred CCcEEEEEECCCcchHHHHHHHHHHHHHHHC--------CCEEE--EEeCCCCHHHHHHHHHHHHHCCCCEEEEeCCCC-
Confidence 457899999864 333334555665555542 45444 456666777766677777777888877433222
Q ss_pred HHHHHHhhccCCccEEEcccCCCCCCCCCCCceEEecCCchHHHHHHHHHHHhcCCcEEEEEEEcC--ccccchHHHHHH
Q 002309 109 AHIVSYVSNELQVPLLSFGVTDPTLSSLQYPFFVRTTQSDSYQMTAVAEMVSYYGWNAVSVIFVDN--EYGRNGVSALND 186 (938)
Q Consensus 109 ~~~va~~~~~~~iP~Is~~~~~~~l~~~~~p~~~r~~ps~~~~~~ai~~~l~~~~w~~vaii~~d~--~~g~~~~~~l~~ 186 (938)
.......+...++|+|......+. +.+..+..++...+..+++++...|.++|+++.... .......+.+.+
T Consensus 76 ~~~~~~~~~~~~iPvV~~~~~~~~------~~~~~V~~D~~~~g~~a~~~L~~~G~~~i~~i~~~~~~~~~~~R~~gf~~ 149 (291)
T 3egc_A 76 EHDYLRTELPKTFPIVAVNRELRI------PGCGAVLSENVRGARTAVEYLIARGHTRIGAIVGSAGLMTSRERLKGFRA 149 (291)
T ss_dssp CCHHHHHSSCTTSCEEEESSCCCC------TTCEEEEECHHHHHHHHHHHHHHTTCCSEEEECSCTTSHHHHHHHHHHHH
T ss_pred ChHHHHHhhccCCCEEEEecccCC------CCCCEEEECcHHHHHHHHHHHHHcCCCEEEEEeCCCCCcCHHHHHHHHHH
Confidence 234455667789999987543321 224456778888899999998888999999998543 345566788999
Q ss_pred HHhhcceEEEEEeecCCCCCCChhhHHHHHHHHhc--CCceEEEEEeChhhHHHHHHHHHHcCCCCCCeEEE
Q 002309 187 KLAERRCRISYKSGIPPESGVNTGYVMDLLVKVAL--MESRVIVLHVSPSLGFQVFSVAKYLGMMGNGYVWI 256 (938)
Q Consensus 187 ~l~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~lk~--~~~~viv~~~~~~~~~~~l~~a~~~g~~~~~~~wi 256 (938)
++++.|+.+......... .+..+....+.++-+ ..+++|+ +.+...+..+++++++.|+..++-+-+
T Consensus 150 ~l~~~g~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~ai~-~~~d~~a~g~~~al~~~g~~vP~di~v 218 (291)
T 3egc_A 150 AMSAAGLPVRQEWIAAGG--VRADNGRDGAIKVLTGADRPTALL-TSSHRITEGAMQALNVLGLRYGPDVEI 218 (291)
T ss_dssp HHHHTTCCCCGGGEEC--------CCHHHHHHHHTC-CCCSEEE-ESSHHHHHHHHHHHHHHTCCBTTTBEE
T ss_pred HHHHcCCCCCHHHeEeCC--CChhHHHHHHHHHHhCCCCCcEEE-ECCcHHHHHHHHHHHHcCCCCCCceEE
Confidence 999988764211111111 111122233333332 3566655 456667788999999999875543333
No 116
>3k4h_A Putative transcriptional regulator; structural genomics, protein structure INI NEW YORK structural genomix research consortium; HET: MAL; 2.80A {Bacillus cytotoxicus nvh 391-98}
Probab=97.71 E-value=0.00047 Score=72.65 Aligned_cols=206 Identities=13% Similarity=0.036 Sum_probs=128.3
Q ss_pred eeEEEEEEeeC-----C-CcchhHHHHHHHHHHHHHhcCCCCCCCCEEEEEEccCCCChHHHHHHHHHHHhcCcEEEEcC
Q 002309 30 AVVNVGALFTL-----D-STIGRVAKIAIEEAVKDVNSNSSILHGTKLNITMQSSNCSGFIGMVEALRFMETDIVAIIGP 103 (938)
Q Consensus 30 ~~i~IG~i~~~-----~-~~~g~~~~~a~~~Av~~iN~~~~il~g~~l~~~~~D~~~~~~~a~~~a~~li~~~V~aviGp 103 (938)
.+-+||+++|. . ..+-.....+++-+.++. |+++ .+.++..++.........+..++|.+||-.
T Consensus 7 ~~~~Igvi~~~~~~~~~~~~~~~~~~~gi~~~a~~~--------g~~~--~~~~~~~~~~~~~~~~~~~~~~~vdgiIi~ 76 (292)
T 3k4h_A 7 TTKTLGLVMPSSASKAFQNPFFPEVIRGISSFAHVE--------GYAL--YMSTGETEEEIFNGVVKMVQGRQIGGIILL 76 (292)
T ss_dssp CCCEEEEECSSCHHHHTTSTHHHHHHHHHHHHHHHT--------TCEE--EECCCCSHHHHHHHHHHHHHTTCCCEEEES
T ss_pred CCCEEEEEecCCccccccCHHHHHHHHHHHHHHHHc--------CCEE--EEEeCCCCHHHHHHHHHHHHcCCCCEEEEe
Confidence 45789999997 2 333344555555555443 4444 445666555554555555666788887642
Q ss_pred CChhHHHHHHHhhccCCccEEEcccCCCCCCCCCCCceEEecCCchHHHHHHHHHHHhcCCcEEEEEEEcC--ccccchH
Q 002309 104 QCSTVAHIVSYVSNELQVPLLSFGVTDPTLSSLQYPFFVRTTQSDSYQMTAVAEMVSYYGWNAVSVIFVDN--EYGRNGV 181 (938)
Q Consensus 104 ~~s~~~~~va~~~~~~~iP~Is~~~~~~~l~~~~~p~~~r~~ps~~~~~~ai~~~l~~~~w~~vaii~~d~--~~g~~~~ 181 (938)
..... ......+...++|+|......+.. +.+..+..++...+..+++++...|.++|+++.... .......
T Consensus 77 ~~~~~-~~~~~~l~~~~iPvV~~~~~~~~~-----~~~~~V~~D~~~~g~~a~~~L~~~G~~~i~~i~~~~~~~~~~~R~ 150 (292)
T 3k4h_A 77 YSREN-DRIIQYLHEQNFPFVLIGKPYDRK-----DEITYVDNDNYTAAREVAEYLISLGHKQIAFIGGGSDLLVTRDRL 150 (292)
T ss_dssp CCBTT-CHHHHHHHHTTCCEEEESCCSSCT-----TTSCEEECCHHHHHHHHHHHHHHTTCCCEEEEESCTTBHHHHHHH
T ss_pred CCCCC-hHHHHHHHHCCCCEEEECCCCCCC-----CCCCEEEECcHHHHHHHHHHHHHCCCceEEEEeCcccchhHHHHH
Confidence 22222 234455667799999865432211 123456778888899999998889999999998543 3345667
Q ss_pred HHHHHHHhhcceEEEEEeecCCCCCCChhhHHHHHHHHhcC--CceEEEEEeChhhHHHHHHHHHHcCCCCCCeE
Q 002309 182 SALNDKLAERRCRISYKSGIPPESGVNTGYVMDLLVKVALM--ESRVIVLHVSPSLGFQVFSVAKYLGMMGNGYV 254 (938)
Q Consensus 182 ~~l~~~l~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~lk~~--~~~viv~~~~~~~~~~~l~~a~~~g~~~~~~~ 254 (938)
..+.+++++.|+.+.....+... .+..+....+.++-+. ++++|+ +.+...+..+++++++.|+..++-+
T Consensus 151 ~gf~~~l~~~g~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~ai~-~~~d~~a~g~~~al~~~g~~vP~di 222 (292)
T 3k4h_A 151 AGMSDALKLADIVLPKEYILHFD--FSRESGQQAVEELMGLQQPPTAIM-ATDDLIGLGVLSALSKKGFVVPKDV 222 (292)
T ss_dssp HHHHHHHHHTTCCCCGGGEEECC--SSHHHHHHHHHHHHTSSSCCSEEE-ESSHHHHHHHHHHHHHTTCCTTTTC
T ss_pred HHHHHHHHHcCCCCChheEEecC--CCHHHHHHHHHHHHcCCCCCcEEE-EcChHHHHHHHHHHHHhCCCCCCeE
Confidence 88999999998764321111111 2244455556665544 456655 4556677789999999998655433
No 117
>3m9w_A D-xylose-binding periplasmic protein; xylose binding protein, conformational changes, SUGA protein; 2.15A {Escherichia coli} PDB: 3m9x_A* 3ma0_A*
Probab=97.67 E-value=0.0015 Score=69.49 Aligned_cols=200 Identities=8% Similarity=-0.024 Sum_probs=128.0
Q ss_pred eEEEEEEeeCC-CcchhHHHHHHHHHHHHHhcCCCCCCCCEEEEEEccCCCChHHHHHHHHHHHhcCcEEEEc-CCChhH
Q 002309 31 VVNVGALFTLD-STIGRVAKIAIEEAVKDVNSNSSILHGTKLNITMQSSNCSGFIGMVEALRFMETDIVAIIG-PQCSTV 108 (938)
Q Consensus 31 ~i~IG~i~~~~-~~~g~~~~~a~~~Av~~iN~~~~il~g~~l~~~~~D~~~~~~~a~~~a~~li~~~V~aviG-p~~s~~ 108 (938)
..+||+++|.. .++-.....+++.+.++. |+++. +.++..++....+....++.+++.+||- |.....
T Consensus 2 ~~~Igvi~~~~~~~~~~~~~~gi~~~a~~~--------g~~~~--~~~~~~~~~~~~~~i~~l~~~~vdgiIi~~~~~~~ 71 (313)
T 3m9w_A 2 EVKIGMAIDDLRLERWQKDRDIFVKKAESL--------GAKVF--VQSANGNEETQMSQIENMINRGVDVLVIIPYNGQV 71 (313)
T ss_dssp -CEEEEEESCCSSSTTHHHHHHHHHHHHHT--------SCEEE--EEECTTCHHHHHHHHHHHHHTTCSEEEEECSSTTS
T ss_pred CcEEEEEeCCCCChHHHHHHHHHHHHHHHc--------CCEEE--EECCCCCHHHHHHHHHHHHHcCCCEEEEeCCChhh
Confidence 35799999963 444456667777666653 44444 4566777777777777888888877763 444433
Q ss_pred HHHHHHhhccCCccEEEcccCCCCCCCCCCCceEEecCCchHHHHHHHHHHH-hcCCcEEEEEEEcC--ccccchHHHHH
Q 002309 109 AHIVSYVSNELQVPLLSFGVTDPTLSSLQYPFFVRTTQSDSYQMTAVAEMVS-YYGWNAVSVIFVDN--EYGRNGVSALN 185 (938)
Q Consensus 109 ~~~va~~~~~~~iP~Is~~~~~~~l~~~~~p~~~r~~ps~~~~~~ai~~~l~-~~~w~~vaii~~d~--~~g~~~~~~l~ 185 (938)
.......+...++|+|......+. . +....+..++...+..+++++. ..|-+++++|..+. .......+.+.
T Consensus 72 ~~~~~~~~~~~~iPvV~~~~~~~~---~--~~~~~V~~D~~~~g~~a~~~L~~~~G~~~i~~i~g~~~~~~~~~R~~Gf~ 146 (313)
T 3m9w_A 72 LSNVVKEAKQEGIKVLAYDRMIND---A--DIDFYISFDNEKVGELQAKALVDIVPQGNYFLMGGSPVDNNAKLFRAGQM 146 (313)
T ss_dssp CHHHHHHHHTTTCEEEEESSCCTT---S--CCSEEEEECHHHHHHHHHHHHHHHCSSEEEEEEESCTTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHCCCeEEEECCcCCC---C--CceEEEecCHHHHHHHHHHHHHHhCCCCcEEEEECCCCCccHHHHHHHHH
Confidence 344455667789999987543322 1 1113566788888899999877 89999999997432 23445578888
Q ss_pred HHHhhc----ceEEEEEeecCCCCCCChhhHHHHHHHHhc---CCceEEEEEeChhhHHHHHHHHHHcCCC
Q 002309 186 DKLAER----RCRISYKSGIPPESGVNTGYVMDLLVKVAL---MESRVIVLHVSPSLGFQVFSVAKYLGMM 249 (938)
Q Consensus 186 ~~l~~~----g~~v~~~~~~~~~~~~~~~d~~~~l~~lk~---~~~~viv~~~~~~~~~~~l~~a~~~g~~ 249 (938)
+++++. ++.+..... ... .+.......+.++-+ .++++|+ +.+...+..+++++++.|+.
T Consensus 147 ~~l~~~~~~~~~~~~~~~~-~~~--~~~~~~~~~~~~~l~~~~~~~~ai~-~~~d~~a~g~~~al~~~G~~ 213 (313)
T 3m9w_A 147 KVLKPYVDSGKIKVVGDQW-VDG--WLPENALKIMENALTANNNKIDAVV-ASNDATAGGAIQALSAQGLS 213 (313)
T ss_dssp HHHHHHHHTTSEEEEEEEE-CGG--GCHHHHHHHHHHHHHHTTTCCCEEE-ESSHHHHHHHHHHHHTTTCT
T ss_pred HHHHhhccCCCEEEEeecc-CCC--cCHHHHHHHHHHHHHhCCCCeeEEE-ECCCchHHHHHHHHHHcCCC
Confidence 888887 577654332 111 123344444444433 2456544 44556777899999999985
No 118
>3ctp_A Periplasmic binding protein/LACI transcriptional; structural genomics, protein structure initiative; HET: XLF; 1.41A {Alkaliphilus metalliredigens}
Probab=97.67 E-value=0.00036 Score=75.10 Aligned_cols=202 Identities=11% Similarity=0.031 Sum_probs=125.7
Q ss_pred eeEEEEEEeeCC-CcchhHHHHHHHHHHHHHhcCCCCCCCCEEEEEEccCCCChHHHHHHHHHHHhcCcEEEEcCCChhH
Q 002309 30 AVVNVGALFTLD-STIGRVAKIAIEEAVKDVNSNSSILHGTKLNITMQSSNCSGFIGMVEALRFMETDIVAIIGPQCSTV 108 (938)
Q Consensus 30 ~~i~IG~i~~~~-~~~g~~~~~a~~~Av~~iN~~~~il~g~~l~~~~~D~~~~~~~a~~~a~~li~~~V~aviGp~~s~~ 108 (938)
...+||++.|.. .++......+++.+.++ .|+.+.+ .++..++.........++.++|.+|| ......
T Consensus 59 ~~~~Igvi~~~~~~~~~~~~~~gi~~~~~~--------~g~~~~~--~~~~~~~~~~~~~~~~l~~~~vdgiI-~~~~~~ 127 (330)
T 3ctp_A 59 NSKTIGLMVPNISNPFFNQMASVIEEYAKN--------KGYTLFL--CNTDDDKEKEKTYLEVLQSHRVAGII-ASRSQC 127 (330)
T ss_dssp -CCEEEEEESCTTSHHHHHHHHHHHHHHHH--------TTCEEEE--EECTTCHHHHHHHHHHHHHTTCSEEE-EETCCC
T ss_pred CCCEEEEEeCCCCCcHHHHHHHHHHHHHHH--------CCCEEEE--EeCCCChHHHHHHHHHHHhCCCCEEE-ECCCCC
Confidence 457899999864 33334555666665554 2565544 46666776666667777777888888 332222
Q ss_pred HHHHHHhhccCCccEEEcccCCCCCCCCCCCceEEecCCchHHHHHHHHHHHhcCCcEEEEEEEcC--ccccchHHHHHH
Q 002309 109 AHIVSYVSNELQVPLLSFGVTDPTLSSLQYPFFVRTTQSDSYQMTAVAEMVSYYGWNAVSVIFVDN--EYGRNGVSALND 186 (938)
Q Consensus 109 ~~~va~~~~~~~iP~Is~~~~~~~l~~~~~p~~~r~~ps~~~~~~ai~~~l~~~~w~~vaii~~d~--~~g~~~~~~l~~ 186 (938)
. +.+...++|+|......+. . +..+..++...+..+++++...|.++|++|..+. .......+.+.+
T Consensus 128 ~----~~l~~~~iPvV~~~~~~~~----~---~~~V~~D~~~~~~~a~~~L~~~G~~~I~~i~~~~~~~~~~~R~~Gf~~ 196 (330)
T 3ctp_A 128 E----DEYANIDIPVVAFENHILD----N---IITISSDNYNGGRMAFDHLYEKGCRKILHIKGPEVFEATELRYKGFLD 196 (330)
T ss_dssp S----GGGTTCCSCEEEESSCCCT----T---SCEEEECHHHHHHHHHHHHHHTTCCSEEEEECCTTCHHHHHHHHHHHH
T ss_pred H----HHHHhcCCCEEEEeccCCC----C---CCEEEeCHHHHHHHHHHHHHHCCCCeEEEEeCCccCccHHHHHHHHHH
Confidence 1 2345779999987543221 1 2345567777788888988888999999998643 245566788999
Q ss_pred HHhhcceEEEEEeecCCCCCCChhhHHHHHHHHhc-CCceEEEEEeChhhHHHHHHHHHHcCCCCCCeEEEE
Q 002309 187 KLAERRCRISYKSGIPPESGVNTGYVMDLLVKVAL-MESRVIVLHVSPSLGFQVFSVAKYLGMMGNGYVWIA 257 (938)
Q Consensus 187 ~l~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~lk~-~~~~viv~~~~~~~~~~~l~~a~~~g~~~~~~~wi~ 257 (938)
++++.|+.+. ...+... .+..+-...+.++.+ .++++|+. .+...+..+++++++.|+..++-+-+.
T Consensus 197 al~~~g~~~~-~~~~~~~--~~~~~~~~~~~~ll~~~~~~ai~~-~~d~~A~g~~~al~~~G~~vP~disvv 264 (330)
T 3ctp_A 197 GARAKDLEID-FIEFQHD--FQVKMLEEDINSMKDIVNYDGIFV-FNDIAAATVMRALKKRGVSIPQEVQII 264 (330)
T ss_dssp HHHHTTCCCE-EEECSSS--CCGGGGGCCCTTGGGGGGSSEEEE-SSHHHHHHHHHHHHHTTCCTTTTCEEE
T ss_pred HHHHcCCCcc-eeEEcCC--CCHHHHHHHHHHHhcCCCCcEEEE-CCHHHHHHHHHHHHHcCCCCCCCeEEE
Confidence 9999998654 2222211 112221222333322 35677664 445667789999999998655434343
No 119
>3gyb_A Transcriptional regulators (LACI-family transcriptional regulatory protein); protein structure initiative II(PSI II), nysgxrc; 1.60A {Corynebacterium glutamicum}
Probab=97.66 E-value=0.00026 Score=74.19 Aligned_cols=200 Identities=9% Similarity=-0.007 Sum_probs=122.3
Q ss_pred eeEEEEEEeeCC-CcchhHHHHHHHHHHHHHhcCCCCCCCCEEEEEEccCCCChHHHHHHHHHHHhcCcEEEEcCCChhH
Q 002309 30 AVVNVGALFTLD-STIGRVAKIAIEEAVKDVNSNSSILHGTKLNITMQSSNCSGFIGMVEALRFMETDIVAIIGPQCSTV 108 (938)
Q Consensus 30 ~~i~IG~i~~~~-~~~g~~~~~a~~~Av~~iN~~~~il~g~~l~~~~~D~~~~~~~a~~~a~~li~~~V~aviGp~~s~~ 108 (938)
..-+||+++|.. ..+-.....+++.+.++. |+.+.+...+ ++....+....++.++|.+|| ......
T Consensus 4 ~~~~Igvi~~~~~~~~~~~~~~gi~~~a~~~--------g~~~~~~~~~---~~~~~~~~~~~l~~~~vdgiI-~~~~~~ 71 (280)
T 3gyb_A 4 RTQLIAVLIDDYSNPWFIDLIQSLSDVLTPK--------GYRLSVIDSL---TSQAGTDPITSALSMRPDGII-IAQDIP 71 (280)
T ss_dssp CCCEEEEEESCTTSGGGHHHHHHHHHHHGGG--------TCEEEEECSS---SSCSSSCHHHHHHTTCCSEEE-EESCC-
T ss_pred ccCEEEEEeCCCCChHHHHHHHHHHHHHHHC--------CCEEEEEeCC---CchHHHHHHHHHHhCCCCEEE-ecCCCC
Confidence 356899999864 444445566666555443 4555554444 443334455566777888888 322222
Q ss_pred HHHHHHhhccCCccEEEcccCCCCCCCCCCCceEEecCCchHHHHHHHHHHHhcCCcEEEEEEEcCccccchHHHHHHHH
Q 002309 109 AHIVSYVSNELQVPLLSFGVTDPTLSSLQYPFFVRTTQSDSYQMTAVAEMVSYYGWNAVSVIFVDNEYGRNGVSALNDKL 188 (938)
Q Consensus 109 ~~~va~~~~~~~iP~Is~~~~~~~l~~~~~p~~~r~~ps~~~~~~ai~~~l~~~~w~~vaii~~d~~~g~~~~~~l~~~l 188 (938)
...+.. .++|+|......+ .+ +.+..+..++...+..+++++...|.++++++...........+.+.+++
T Consensus 72 ~~~~~~----~~iPvV~~~~~~~--~~---~~~~~V~~D~~~~g~~a~~~L~~~G~~~i~~i~~~~~~~~~R~~gf~~~l 142 (280)
T 3gyb_A 72 DFTVPD----SLPPFVIAGTRIT--QA---STHDSVANDDFRGAEIATKHLIDLGHTHIAHLRVGSGAGLRRFESFEATM 142 (280)
T ss_dssp -----------CCCEEEESCCCS--SS---CSTTEEEECHHHHHHHHHHHHHHTTCCSEEEECCSSHHHHHHHHHHHHHH
T ss_pred hhhHhh----cCCCEEEECCCCC--CC---CCCCEEEechHHHHHHHHHHHHHCCCCeEEEEeCCCchHHHHHHHHHHHH
Confidence 222222 8999998754431 11 22234567788889999999888899999999865444566678899999
Q ss_pred hhcceEEEEEeecCCCCCCChhhHHHHHHHHhcC--CceEEEEEeChhhHHHHHHHHHHcCCCCCCeE
Q 002309 189 AERRCRISYKSGIPPESGVNTGYVMDLLVKVALM--ESRVIVLHVSPSLGFQVFSVAKYLGMMGNGYV 254 (938)
Q Consensus 189 ~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~lk~~--~~~viv~~~~~~~~~~~l~~a~~~g~~~~~~~ 254 (938)
++.|..+.... +... .+..+....+.++-+. .+++|+ +.+...+..+++++++.|+..++-+
T Consensus 143 ~~~~~~~~~~~-~~~~--~~~~~~~~~~~~~l~~~~~~~ai~-~~~d~~a~g~~~al~~~g~~vP~di 206 (280)
T 3gyb_A 143 RAHGLEPLSND-YLGP--AVEHAGYTETLALLKEHPEVTAIF-SSNDITAIGALGAARELGLRVPEDL 206 (280)
T ss_dssp HHTTCCCEECC-CCSC--CCHHHHHHHHHHHHHHCTTCCEEE-ESSHHHHHHHHHHHHHHTCCTTTTC
T ss_pred HHcCcCCCccc-ccCC--CCHHHHHHHHHHHHhCCCCCCEEE-ECChHHHHHHHHHHHHcCCCCCCee
Confidence 99998765432 2222 2344444555555333 456654 4556678889999999998655433
No 120
>1qpz_A PURA, protein (purine nucleotide synthesis repressor); transcription regulation, DNA-binding, purine biosynthesis; HET: DNA HPA; 2.50A {Escherichia coli} SCOP: a.35.1.5 c.93.1.1 PDB: 1bdi_A* 1qp0_A* 1qp4_A* 1pnr_A* 1wet_A* 1zay_A* 1vpw_A* 2pue_A* 2puf_A* 2pug_A* 1bdh_A* 1qp7_A* 1qqa_A* 1qqb_A* 2puc_A* 2pua_A* 2pub_A* 2pud_A* 1jfs_A* 1jh9_A* ...
Probab=97.64 E-value=0.0016 Score=70.31 Aligned_cols=208 Identities=8% Similarity=-0.004 Sum_probs=126.7
Q ss_pred eeEEEEEEeeCC-CcchhHHHHHHHHHHHHHhcCCCCCCCCEEEEEEccCCCChHHHHHHHHHHHhcCcEEEEcCCChhH
Q 002309 30 AVVNVGALFTLD-STIGRVAKIAIEEAVKDVNSNSSILHGTKLNITMQSSNCSGFIGMVEALRFMETDIVAIIGPQCSTV 108 (938)
Q Consensus 30 ~~i~IG~i~~~~-~~~g~~~~~a~~~Av~~iN~~~~il~g~~l~~~~~D~~~~~~~a~~~a~~li~~~V~aviGp~~s~~ 108 (938)
...+||++.|.. .++......+++.+.++. |+++.+ .++..++.........++.++|.+||-......
T Consensus 57 ~~~~Igvi~~~~~~~~~~~~~~gi~~~a~~~--------g~~~~~--~~~~~~~~~~~~~~~~l~~~~vdgiI~~~~~~~ 126 (340)
T 1qpz_A 57 HTKSIGLLATSSEAAYFAEIIEAVEKNCFQK--------GYTLIL--GNAWNNLEKQRAYLSMMAQKRVDGLLVMCSEYP 126 (340)
T ss_dssp CCSEEEEEESCSCSHHHHHHHHHHHHHHHHT--------TCEEEE--EECTTCHHHHHHHHHHHHHTTCSEEEECCSCCC
T ss_pred CCCEEEEEeCCCCChHHHHHHHHHHHHHHHc--------CCEEEE--EeCCCCHHHHHHHHHHHHcCCCCEEEEeCCCCC
Confidence 356899999864 443344556666555542 455544 566667766666666777778888774222111
Q ss_pred HHHHHHhhc-cCCccEEEcccCCCCCCCCCCCceEEecCCchHHHHHHHHHHHhcCCcEEEEEEEcC--ccccchHHHHH
Q 002309 109 AHIVSYVSN-ELQVPLLSFGVTDPTLSSLQYPFFVRTTQSDSYQMTAVAEMVSYYGWNAVSVIFVDN--EYGRNGVSALN 185 (938)
Q Consensus 109 ~~~va~~~~-~~~iP~Is~~~~~~~l~~~~~p~~~r~~ps~~~~~~ai~~~l~~~~w~~vaii~~d~--~~g~~~~~~l~ 185 (938)
. .....+. ..++|+|......+. . +....+..++...+..++++|...|.++|++|.... .......+.+.
T Consensus 127 ~-~~~~~l~~~~~iPvV~~~~~~~~---~--~~~~~V~~D~~~~~~~a~~~L~~~G~~~I~~i~g~~~~~~~~~R~~Gf~ 200 (340)
T 1qpz_A 127 E-PLLAMLEEYRHIPMVVMDWGEAK---A--DFTDAVIDNAFEGGYMAGRYLIERGHREIGVIPGPLERNTGAGRLAGFM 200 (340)
T ss_dssp H-HHHHHHHTTTTSCEEEEEESSCC---C--SSSEEEECCHHHHHHHHHHHHHHHTCCCEEEECCCTTSHHHHHHHHHHH
T ss_pred h-HHHHHHHhhCCCCEEEEecccCC---C--CCCCEEEECHHHHHHHHHHHHHHCCCCEEEEEeCCCccccHHHHHHHHH
Confidence 1 1223333 369999987543221 1 222356677777788888888888999999997542 23456678899
Q ss_pred HHHhhcceEEEEEeecCCCCCCChhhHHHHHHHHhc--CCceEEEEEeChhhHHHHHHHHHHcCCCCCCeEEE
Q 002309 186 DKLAERRCRISYKSGIPPESGVNTGYVMDLLVKVAL--MESRVIVLHVSPSLGFQVFSVAKYLGMMGNGYVWI 256 (938)
Q Consensus 186 ~~l~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~lk~--~~~~viv~~~~~~~~~~~l~~a~~~g~~~~~~~wi 256 (938)
+++++.|+.+.....+... .+..+....+.++-+ ..+++|+. .+...+..+++++++.|+..++-+-+
T Consensus 201 ~al~~~g~~~~~~~~~~~~--~~~~~~~~~~~~ll~~~~~~~ai~~-~nd~~A~g~~~al~~~G~~vP~disv 270 (340)
T 1qpz_A 201 KAMEEAMIKVPESWIVQGD--FEPESGYRAMQQILSQPHRPTAVFC-GGDIMAMGALCAADEMGLRVPQDVSL 270 (340)
T ss_dssp HHHHHTTCCCCGGGBCCCC--SSHHHHHHHHHHHHTSSSCCSEEEE-SSHHHHHHHHHHHHHTTCCTTTTCEE
T ss_pred HHHHHCCCCCChhheEeCC--CCHHHHHHHHHHHHcCCCCCcEEEE-CCHHHHHHHHHHHHHcCCCCCCCeEE
Confidence 9999998764321112111 223344445555544 34666654 45567778999999999865543333
No 121
>3uif_A Sulfonate ABC transporter, periplasmic sulfonate- protein SSUA; structural genomics; 2.60A {Methylobacillus flagellatus}
Probab=97.63 E-value=0.00016 Score=78.48 Aligned_cols=108 Identities=19% Similarity=0.111 Sum_probs=62.7
Q ss_pred CCCCChHHhhhCCCCeeEEeCchHHHHHH---Hhccccccccccc-CCHHHHHHHHhcCCCCCceEEEEecchhHHHHHh
Q 002309 688 SPINGIESLRKSDDPIGYQEGSFAEYYLS---QELNISKSRLVAL-RTPEDYAKALKDGPGKGGVAAVVDERPYVELFLS 763 (938)
Q Consensus 688 ~~i~s~~dL~~~~~~i~~~~~s~~~~~~~---~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~g~~~a~i~~~~~~~~~~~ 763 (938)
.+|++++||. |++|++..|+.....+. +..++....+..+ -+..+...+|.+ |++||++...+.......
T Consensus 109 s~i~s~~DLk--Gk~I~v~~gs~~~~~~~~~l~~~Gl~~~~v~~v~~~~~~~~~al~~----G~vDa~~~~~~~~~~~~~ 182 (348)
T 3uif_A 109 STAKSIKDLK--GKKIALHRGRPWELAFSNLLQSEGLTFKDFKIVNVNPQVGAAALAS----GTVDGFFSLFDSYILEDR 182 (348)
T ss_dssp CCCCSGGGGT--TSEEEECTTSTHHHHHHHHHHHTTCCGGGSEEECCCHHHHHHHHHH----TSSSEEEESTTHHHHHHT
T ss_pred CCCCCHHHcC--CCEEEecCCChHHHHHHHHHHHcCCCHHHeEEEECCHHHHHHHHHc----CCCCEEEechHHHHHHhc
Confidence 4799999998 99999987776544332 2334332222222 256788999999 899999887776643322
Q ss_pred cCCcEEEeCccc---cccceEeeecCC----Cc-chhhHHHHHHhh
Q 002309 764 SQCSFRIVGQEF---TKSGWGFAFPRD----SP-LAVDLSSAILEL 801 (938)
Q Consensus 764 ~~~~l~~~~~~~---~~~~~~~~~~k~----sp-l~~~i~~~il~l 801 (938)
...+.......+ .....+++++++ .| ....|.+++.+.
T Consensus 183 g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~a~~~a 228 (348)
T 3uif_A 183 GVGKIIWSTKTAPVDWKLMGGVWARNDFVKQNPEITQAIVTAYLKS 228 (348)
T ss_dssp TSEEEEEEGGGSCGGGSCCEEEEEEHHHHHHCHHHHHHHHHHHHHH
T ss_pred CCcEEEEeccccCCCCcceeEEEECHHHHHHCHHHHHHHHHHHHHH
Confidence 222322222222 123346677665 44 555555555443
No 122
>3gv0_A Transcriptional regulator, LACI family; transcription regulator, PSI-II, structural genomics structure initiative; 2.35A {Agrobacterium tumefaciens str}
Probab=97.63 E-value=0.00082 Score=70.67 Aligned_cols=207 Identities=12% Similarity=0.024 Sum_probs=123.4
Q ss_pred eeEEEEEEeeCCC---cchhHHHHHHHHHHHHHhcCCCCCCCCEEEEEEccCCCChHHHHHHHHHHHhcCcEEEEc-CCC
Q 002309 30 AVVNVGALFTLDS---TIGRVAKIAIEEAVKDVNSNSSILHGTKLNITMQSSNCSGFIGMVEALRFMETDIVAIIG-PQC 105 (938)
Q Consensus 30 ~~i~IG~i~~~~~---~~g~~~~~a~~~Av~~iN~~~~il~g~~l~~~~~D~~~~~~~a~~~a~~li~~~V~aviG-p~~ 105 (938)
.+-+||+++|... .+-.....+++-+. +. .|+++.+ .+...++.........+..++|.+||- |..
T Consensus 7 ~s~~Igvv~~~~~~~~~~~~~~~~gi~~~a----~~----~g~~~~~--~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~ 76 (288)
T 3gv0_A 7 KTNVIALVLSVDEELMGFTSQMVFGITEVL----ST----TQYHLVV--TPHIHAKDSMVPIRYILETGSADGVIISKIE 76 (288)
T ss_dssp CCCEEEEECBCCCCSSCHHHHHHHHHHHHH----TT----SSCEEEE--CCBSSGGGTTHHHHHHHHHTCCSEEEEESCC
T ss_pred CCCEEEEEecCCccccHHHHHHHHHHHHHH----HH----cCCEEEE--ecCCcchhHHHHHHHHHHcCCccEEEEecCC
Confidence 4578999999653 33233344444333 22 2565554 444433333222222344567776653 222
Q ss_pred hhHHHHHHHhhccCCccEEEcccCCCCCCCCCCCceEEecCCchHHHHHHHHHHHhcCCcEEEEEEEcC--ccccchHHH
Q 002309 106 STVAHIVSYVSNELQVPLLSFGVTDPTLSSLQYPFFVRTTQSDSYQMTAVAEMVSYYGWNAVSVIFVDN--EYGRNGVSA 183 (938)
Q Consensus 106 s~~~~~va~~~~~~~iP~Is~~~~~~~l~~~~~p~~~r~~ps~~~~~~ai~~~l~~~~w~~vaii~~d~--~~g~~~~~~ 183 (938)
... .....+...++|+|......+. +.+-.+..++...+..+++++...|.++++++..+. .......+.
T Consensus 77 ~~~--~~~~~l~~~~iPvV~i~~~~~~------~~~~~V~~D~~~~g~~a~~~L~~~G~~~I~~i~~~~~~~~~~~R~~g 148 (288)
T 3gv0_A 77 PND--PRVRFMTERNMPFVTHGRSDMG------IEHAFHDFDNEAYAYEAVERLAQCGRKRIAVIVPPSRFSFHDHARKG 148 (288)
T ss_dssp TTC--HHHHHHHHTTCCEEEESCCCSS------CCCEEEEECHHHHHHHHHHHHHHTTCCEEEEECCCTTSHHHHHHHHH
T ss_pred CCc--HHHHHHhhCCCCEEEECCcCCC------CCCcEEEeCcHHHHHHHHHHHHHCCCCeEEEEcCCcccchHHHHHHH
Confidence 221 2344556689999986543221 123346678888899999999888999999997543 235566788
Q ss_pred HHHHHhhcceEEEEEeecCCCCCCChhhHHHHHHHHhcC--CceEEEEEeChhhHHHHHHHHHHcCCCCCCeEEEE
Q 002309 184 LNDKLAERRCRISYKSGIPPESGVNTGYVMDLLVKVALM--ESRVIVLHVSPSLGFQVFSVAKYLGMMGNGYVWIA 257 (938)
Q Consensus 184 l~~~l~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~lk~~--~~~viv~~~~~~~~~~~l~~a~~~g~~~~~~~wi~ 257 (938)
+.+++++.|+.+.....+... .+..+....+.++-+. .++.|+ +.+...+..+++++++.|+..++-+-++
T Consensus 149 f~~~l~~~g~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~ai~-~~~d~~A~g~~~al~~~g~~vP~di~vi 221 (288)
T 3gv0_A 149 FNRGIRDFGLTEFPIDAVTIE--TPLEKIRDFGQRLMQSSDRPDGIV-SISGSSTIALVAGFEAAGVKIGEDVDIV 221 (288)
T ss_dssp HHHHHHHTTCEECCCCSCCTT--SCHHHHHHHHHHHTTSSSCCSEEE-ESCHHHHHHHHHHHHTTTCCTTTSCEEE
T ss_pred HHHHHHHcCCCcchhheeccc--cchHHHHHHHHHHHhCCCCCcEEE-EcCcHHHHHHHHHHHHcCCCCCCceEEE
Confidence 999999999876533222222 2344555566666544 456654 4556677889999999998755433333
No 123
>3jy6_A Transcriptional regulator, LACI family; NYSGXRC, PSI-II, protein S initiative, structural genomics; 1.97A {Lactobacillus brevis}
Probab=97.62 E-value=0.0021 Score=67.03 Aligned_cols=205 Identities=10% Similarity=0.006 Sum_probs=125.1
Q ss_pred CeeEEEEEEeeCC-CcchhHHHHHHHHHHHHHhcCCCCCCCCEEEEEEccCCCChHHHHHHHHHHHhcCcEEEEcCCChh
Q 002309 29 PAVVNVGALFTLD-STIGRVAKIAIEEAVKDVNSNSSILHGTKLNITMQSSNCSGFIGMVEALRFMETDIVAIIGPQCST 107 (938)
Q Consensus 29 ~~~i~IG~i~~~~-~~~g~~~~~a~~~Av~~iN~~~~il~g~~l~~~~~D~~~~~~~a~~~a~~li~~~V~aviGp~~s~ 107 (938)
...-+||+++|.. ..+-.....+++-+.++ . |+++. +.++..++..-.+....++.++|.+||-.....
T Consensus 5 ~~s~~Igvi~~~~~~~~~~~~~~gi~~~~~~----~----g~~~~--~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~ 74 (276)
T 3jy6_A 5 QSSKLIAVIVANIDDYFSTELFKGISSILES----R----GYIGV--LFDANADIEREKTLLRAIGSRGFDGLILQSFSN 74 (276)
T ss_dssp CCCCEEEEEESCTTSHHHHHHHHHHHHHHHT----T----TCEEE--EEECTTCHHHHHHHHHHHHTTTCSEEEEESSCC
T ss_pred CCCcEEEEEeCCCCchHHHHHHHHHHHHHHH----C----CCEEE--EEeCCCCHHHHHHHHHHHHhCCCCEEEEecCCc
Confidence 3467899999864 33223344444444332 2 45554 455666766666666677777887776432222
Q ss_pred HHHHHHHhhccCCccEEEcccCCCCCCCCCCCceEEecCCchHHHHHHHHHHHhcCCcEEEEEEEcCc-c--ccchHHHH
Q 002309 108 VAHIVSYVSNELQVPLLSFGVTDPTLSSLQYPFFVRTTQSDSYQMTAVAEMVSYYGWNAVSVIFVDNE-Y--GRNGVSAL 184 (938)
Q Consensus 108 ~~~~va~~~~~~~iP~Is~~~~~~~l~~~~~p~~~r~~ps~~~~~~ai~~~l~~~~w~~vaii~~d~~-~--g~~~~~~l 184 (938)
......+...++|+|......+ +.. +-.+..++...+..+++++...|.++++++..+.. . .......+
T Consensus 75 --~~~~~~l~~~~iPvV~i~~~~~---~~~---~~~V~~D~~~~g~~a~~~L~~~G~~~I~~i~~~~~~~~~~~~R~~gf 146 (276)
T 3jy6_A 75 --PQTVQEILHQQMPVVSVDREMD---ACP---WPQVVTDNFEAAKAATTAFRQQGYQHVVVLTSELELSRTRQERYRGI 146 (276)
T ss_dssp --HHHHHHHHTTSSCEEEESCCCT---TCS---SCEEECCHHHHHHHHHHHHHTTTCCEEEEEEECSTTCHHHHHHHHHH
T ss_pred --HHHHHHHHHCCCCEEEEecccC---CCC---CCEEEEChHHHHHHHHHHHHHcCCCeEEEEecCCCCCchHHHHHHHH
Confidence 4445566778999998754322 111 23466788888999999999999999999986543 2 34566778
Q ss_pred HHHHhhcceEEEEEeecCCCCCCChhhHHHHHHHHhc-CCceEEEEEeChhhHHHHHHHHHHcCCCCCCeEEEE
Q 002309 185 NDKLAERRCRISYKSGIPPESGVNTGYVMDLLVKVAL-MESRVIVLHVSPSLGFQVFSVAKYLGMMGNGYVWIA 257 (938)
Q Consensus 185 ~~~l~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~lk~-~~~~viv~~~~~~~~~~~l~~a~~~g~~~~~~~wi~ 257 (938)
.+++++.+. +. +...............+.++. .++++|+ +++...+..+++++++.|+..++-+-++
T Consensus 147 ~~~l~~~~~-~~----~~~~~~~~~~~~~~~~~~l~~~~~~~ai~-~~~d~~a~g~~~al~~~g~~vP~di~vi 214 (276)
T 3jy6_A 147 LAAAQDVDV-LE----VSESSYNHSEVHQRLTQLITQNDQKTVAF-ALKERWLLEFFPNLIISGLIDNQTVTAT 214 (276)
T ss_dssp HTTCSEEEE-EE----ECSSSCCHHHHHHHHHHHHHSSSSCEEEE-ESSHHHHHHHSHHHHHSSSCCSSSEEEE
T ss_pred HHHHHhCCc-EE----EeccccCCcHHHHHHHHHHhcCCCCcEEE-EeCcHHHHHHHHHHHHcCCCCCCcEEEE
Confidence 888877753 22 111100112334444444443 3455554 4566677789999999998766545444
No 124
>3k9c_A Transcriptional regulator, LACI family protein; PSI-II, 11026W, structural genomics, PR structure initiative; 2.14A {Rhodococcus jostii}
Probab=97.58 E-value=0.0024 Score=67.09 Aligned_cols=206 Identities=12% Similarity=0.045 Sum_probs=124.2
Q ss_pred CeeEEEEEEeeCCCcchhHHHHHHHHHHHHHhcCCCCCCCCEEEEEEccCCCChHHHHHHHHHHHhcCcEEEEcCCChhH
Q 002309 29 PAVVNVGALFTLDSTIGRVAKIAIEEAVKDVNSNSSILHGTKLNITMQSSNCSGFIGMVEALRFMETDIVAIIGPQCSTV 108 (938)
Q Consensus 29 ~~~i~IG~i~~~~~~~g~~~~~a~~~Av~~iN~~~~il~g~~l~~~~~D~~~~~~~a~~~a~~li~~~V~aviGp~~s~~ 108 (938)
...-+||++++.+.++-.....+++-+.++. |+++.+...+. +.. -.+....++.++|.+||-......
T Consensus 10 ~~~~~Igvi~~~~~~~~~~~~~gi~~~a~~~--------g~~~~~~~~~~--~~~-~~~~~~~l~~~~vdgiIi~~~~~~ 78 (289)
T 3k9c_A 10 ASSRLLGVVFELQQPFHGDLVEQIYAAATRR--------GYDVMLSAVAP--SRA-EKVAVQALMRERCEAAILLGTRFD 78 (289)
T ss_dssp ---CEEEEEEETTCHHHHHHHHHHHHHHHHT--------TCEEEEEEEBT--TBC-HHHHHHHHTTTTEEEEEEETCCCC
T ss_pred CCCCEEEEEEecCCchHHHHHHHHHHHHHHC--------CCEEEEEeCCC--CHH-HHHHHHHHHhCCCCEEEEECCCCC
Confidence 3456899999555544444555655555443 46665544443 332 344555667778888764222222
Q ss_pred HHHHHHhhccCCccEEEcccCCCCCCCCCCCceEEecCCchHHHHHHHHHHHhcCCcEEEEEEEcCc-cccchHHHHHHH
Q 002309 109 AHIVSYVSNELQVPLLSFGVTDPTLSSLQYPFFVRTTQSDSYQMTAVAEMVSYYGWNAVSVIFVDNE-YGRNGVSALNDK 187 (938)
Q Consensus 109 ~~~va~~~~~~~iP~Is~~~~~~~l~~~~~p~~~r~~ps~~~~~~ai~~~l~~~~w~~vaii~~d~~-~g~~~~~~l~~~ 187 (938)
...+.. +.. ++|+|......+ + +.+-.+..++...+...++++...|.++|+++..... ......+.+.++
T Consensus 79 ~~~~~~-~~~-~iPvV~i~~~~~---~---~~~~~V~~D~~~~~~~a~~~L~~~G~~~I~~i~~~~~~~~~~R~~Gf~~a 150 (289)
T 3k9c_A 79 TDELGA-LAD-RVPALVVARASG---L---PGVGAVRGDDVAGITLAVDHLTELGHRNIAHIDGADAPGGADRRAGFLAA 150 (289)
T ss_dssp HHHHHH-HHT-TSCEEEESSCCS---S---TTSEEEEECHHHHHHHHHHHHHHTTCCSEEEECCTTSTTHHHHHHHHHHH
T ss_pred HHHHHH-HHc-CCCEEEEcCCCC---C---CCCCEEEeChHHHHHHHHHHHHHCCCCcEEEEeCCCCccHHHHHHHHHHH
Confidence 233333 445 999998654322 1 2234567788888899999988889999999985433 344567889999
Q ss_pred HhhcceEEEEEeecCCCCCCChhhHHHHHHHHhcC--CceEEEEEeChhhHHHHHHHHHHcCCCCCCeEEEE
Q 002309 188 LAERRCRISYKSGIPPESGVNTGYVMDLLVKVALM--ESRVIVLHVSPSLGFQVFSVAKYLGMMGNGYVWIA 257 (938)
Q Consensus 188 l~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~lk~~--~~~viv~~~~~~~~~~~l~~a~~~g~~~~~~~wi~ 257 (938)
+++.|+.+.... +... .+..+....+.++-+. .+++|+ +++...+..+++++++.|+..++-+-++
T Consensus 151 l~~~g~~~~~~~-~~~~--~~~~~~~~~~~~~l~~~~~~~ai~-~~~d~~A~g~~~al~~~g~~vP~di~vi 218 (289)
T 3k9c_A 151 MDRHGLSASATV-VTGG--TTETEGAEGMHTLLEMPTPPTAVV-AFNDRCATGVLDLLVRSGRDVPADISVV 218 (289)
T ss_dssp HHHTTCGGGEEE-ECCC--SSHHHHHHHHHHHHTSSSCCSEEE-ESSHHHHHHHHHHHHHTTCCTTTTCEEE
T ss_pred HHHCCCCCCccE-EECC--CCHHHHHHHHHHHHcCCCCCCEEE-ECChHHHHHHHHHHHHcCCCCCCceEEE
Confidence 999987632211 2222 2344445556655443 456554 4455677889999999998765433333
No 125
>3kke_A LACI family transcriptional regulator; structural genomics, DNA-binding, transcription regulation, PSI-2; 2.20A {Mycobacterium smegmatis str}
Probab=97.58 E-value=0.0011 Score=70.23 Aligned_cols=202 Identities=11% Similarity=0.015 Sum_probs=124.4
Q ss_pred CeeEEEEEEeeCC-CcchhHHHHHHHHHHHHHhcCCCCCCCCEEEEEEccCCCChHHHHHHHHHHHhcCcEEEEcCCChh
Q 002309 29 PAVVNVGALFTLD-STIGRVAKIAIEEAVKDVNSNSSILHGTKLNITMQSSNCSGFIGMVEALRFMETDIVAIIGPQCST 107 (938)
Q Consensus 29 ~~~i~IG~i~~~~-~~~g~~~~~a~~~Av~~iN~~~~il~g~~l~~~~~D~~~~~~~a~~~a~~li~~~V~aviGp~~s~ 107 (938)
...-+||+++|.. .++-.....+++-+.++. |+.+. +.++..++....+....++.++|.+||-.....
T Consensus 13 ~~s~~Igvi~~~~~~~~~~~~~~gi~~~a~~~--------g~~~~--~~~~~~~~~~~~~~~~~l~~~~vdgiI~~~~~~ 82 (303)
T 3kke_A 13 SRSGTIGLIVPDVNNAVFADMFSGVQMAASGH--------STDVL--LGQIDAPPRGTQQLSRLVSEGRVDGVLLQRRED 82 (303)
T ss_dssp ----CEEEEESCTTSTTHHHHHHHHHHHHHHT--------TCCEE--EEECCSTTHHHHHHHHHHHSCSSSEEEECCCTT
T ss_pred CCCCEEEEEeCCCcChHHHHHHHHHHHHHHHC--------CCEEE--EEeCCCChHHHHHHHHHHHhCCCcEEEEecCCC
Confidence 3467899999864 334345566666555543 34444 455666666666666677777888776433222
Q ss_pred HHH-HHHHhhccCCccEEEcccCCCCCCCCCCCceEEecCCchHHHHHHHHHHHhcCCcEEEEEEEcC--ccccchHHHH
Q 002309 108 VAH-IVSYVSNELQVPLLSFGVTDPTLSSLQYPFFVRTTQSDSYQMTAVAEMVSYYGWNAVSVIFVDN--EYGRNGVSAL 184 (938)
Q Consensus 108 ~~~-~va~~~~~~~iP~Is~~~~~~~l~~~~~p~~~r~~ps~~~~~~ai~~~l~~~~w~~vaii~~d~--~~g~~~~~~l 184 (938)
... .+..+.+ ++|+|......+. . +-.+..++...+...+++|...|.++|++|.... .......+.+
T Consensus 83 ~~~~~~~~l~~--~iPvV~i~~~~~~----~---~~~V~~D~~~~g~~a~~~L~~~G~~~I~~i~~~~~~~~~~~R~~Gf 153 (303)
T 3kke_A 83 FDDDMLAAVLE--GVPAVTINSRVPG----R---VGSVILDDQKGGGIATEHLITLGHSRIAFISGTAIHDTAQRRKEGY 153 (303)
T ss_dssp CCHHHHHHHHT--TSCEEEESCCCTT----C---CCEEEECHHHHHHHHHHHHHHTTCCSEEEEESCSSCHHHHHHHHHH
T ss_pred CcHHHHHHHhC--CCCEEEECCcCCC----C---CCEEEECcHHHHHHHHHHHHHCCCCeEEEEeCCCcCccHHHHHHHH
Confidence 222 4444444 9999987544322 1 2345677788888889998889999999998543 3445667889
Q ss_pred HHHHhhcceEEEEEeecCCCCCCChhhHHHHHHHH-----hcC--CceEEEEEeChhhHHHHHHHHHHcCCCCCC
Q 002309 185 NDKLAERRCRISYKSGIPPESGVNTGYVMDLLVKV-----ALM--ESRVIVLHVSPSLGFQVFSVAKYLGMMGNG 252 (938)
Q Consensus 185 ~~~l~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~l-----k~~--~~~viv~~~~~~~~~~~l~~a~~~g~~~~~ 252 (938)
.+++++.|+.+......... .+.......+.++ -+. .+++|+ +.+...+..+++++++.|+..++
T Consensus 154 ~~al~~~g~~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~l~~~~~~~ai~-~~nd~~A~g~~~al~~~G~~vP~ 225 (303)
T 3kke_A 154 LETLASAGLRSEAAWVVDAG--WEADAGSAALNTLYRGANLGKPDGPTAVV-VASVNAAVGALSTALRLGLRVPE 225 (303)
T ss_dssp HHHHHHTTCCCCGGGEEECC--SSHHHHHHHHHHHHHHHCTTSTTSCSEEE-ESSHHHHHHHHHHHHHTTCCTTT
T ss_pred HHHHHHcCCCCCcceEEecC--CChHHHHHHHHHhcchhhhcCCCCCcEEE-ECCHHHHHHHHHHHHHcCCCCCC
Confidence 99999998764311111111 2244444556665 433 456654 44556778899999999987554
No 126
>3hcw_A Maltose operon transcriptional repressor; RNA-binding, PSI-2, NYSGXRC, STRU genomics, protein structure initiative; 2.20A {Staphylococcus aureus subsp}
Probab=97.57 E-value=0.0036 Score=65.96 Aligned_cols=208 Identities=10% Similarity=0.063 Sum_probs=124.8
Q ss_pred CeeEEEEEEeeCC------CcchhHHHHHHHHHHHHHhcCCCCCCCCEEEEEEccCCCChHHHHHHHHHHHhcCcEEEEc
Q 002309 29 PAVVNVGALFTLD------STIGRVAKIAIEEAVKDVNSNSSILHGTKLNITMQSSNCSGFIGMVEALRFMETDIVAIIG 102 (938)
Q Consensus 29 ~~~i~IG~i~~~~------~~~g~~~~~a~~~Av~~iN~~~~il~g~~l~~~~~D~~~~~~~a~~~a~~li~~~V~aviG 102 (938)
..+-+||+++|.. .++-.....+++-+.+ .. |+.+ .+.++..++....+....+..++|.+||-
T Consensus 5 ~~s~~Igvi~~~~~~~~~~~~f~~~~~~gi~~~a~----~~----g~~~--~~~~~~~~~~~~~~~~~~l~~~~vdGiI~ 74 (295)
T 3hcw_A 5 NQTYKIGLVLKGSEEPIRLNPFYINVLLGISETCN----QH----GYGT--QTTVSNNMNDLMDEVYKMIKQRMVDAFIL 74 (295)
T ss_dssp CCSCEEEEECSCCCHHHHSCHHHHHHHHHHHHHHH----TT----TCEE--EECCCCSHHHHHHHHHHHHHTTCCSEEEE
T ss_pred CCCcEEEEEeecCCcccccChHHHHHHHHHHHHHH----HC----CCEE--EEEcCCCChHHHHHHHHHHHhCCcCEEEE
Confidence 3457899999642 2222233344443333 32 4554 44566555555555555666678887764
Q ss_pred CCChhHHHHHHHhhccCCccEEEcccCCCCCCCCCCCceEEecCCchHHHHHHHHHHHhcCCcEEEEEEEcCc--cccch
Q 002309 103 PQCSTVAHIVSYVSNELQVPLLSFGVTDPTLSSLQYPFFVRTTQSDSYQMTAVAEMVSYYGWNAVSVIFVDNE--YGRNG 180 (938)
Q Consensus 103 p~~s~~~~~va~~~~~~~iP~Is~~~~~~~l~~~~~p~~~r~~ps~~~~~~ai~~~l~~~~w~~vaii~~d~~--~g~~~ 180 (938)
...... ......+...++|+|......+.. . ..+..+..++...+...+++|...|.+++++|..... .....
T Consensus 75 ~~~~~~-~~~~~~l~~~~iPvV~i~~~~~~~--~--~~~~~V~~D~~~~~~~a~~~L~~~G~~~I~~i~~~~~~~~~~~R 149 (295)
T 3hcw_A 75 LYSKEN-DPIKQMLIDESMPFIVIGKPTSDI--D--HQFTHIDNDNILASENLTRHVIEQGVDELIFITEKGNFEVSKDR 149 (295)
T ss_dssp SCCCTT-CHHHHHHHHTTCCEEEESCCCSSG--G--GGSCEEEECHHHHHHHHHHHHHHHCCSEEEEEEESSCCHHHHHH
T ss_pred cCcccC-hHHHHHHHhCCCCEEEECCCCccc--c--CCceEEecCcHHHHHHHHHHHHHcCCccEEEEcCCccchhHHHH
Confidence 222211 233445667799999865432211 0 0233456677778888889888889999999986433 34566
Q ss_pred HHHHHHHHhhcceEEEEEeecCCCCCCChhhHHHHHHHHhc-----CCceEEEEEeChhhHHHHHHHHHHcCCCCCCeEE
Q 002309 181 VSALNDKLAERRCRISYKSGIPPESGVNTGYVMDLLVKVAL-----MESRVIVLHVSPSLGFQVFSVAKYLGMMGNGYVW 255 (938)
Q Consensus 181 ~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~lk~-----~~~~viv~~~~~~~~~~~l~~a~~~g~~~~~~~w 255 (938)
.+.+.+++++.|+.+... ... .+..+....++++-+ ..+++|+ +.+...+..+++++++.|+..++-+-
T Consensus 150 ~~Gf~~al~~~g~~~~~~-~~~----~~~~~~~~~~~~~l~~~~~~~~~~ai~-~~~d~~A~g~~~al~~~g~~vP~di~ 223 (295)
T 3hcw_A 150 IQGFETVASQFNLDYQII-ETS----NEREVILNYMQNLHTRLKDPNIKQAII-SLDAMLHLAILSVLYELNIEIPKDVM 223 (295)
T ss_dssp HHHHHHHHHHTTCEEEEE-EEC----SCHHHHHHHHHHHHHHHTCTTSCEEEE-ESSHHHHHHHHHHHHHTTCCTTTTEE
T ss_pred HHHHHHHHHHcCCCeeEE-ecc----CCHHHHHHHHHHHHhhcccCCCCcEEE-ECChHHHHHHHHHHHHcCCCCCCceE
Confidence 788999999999876521 111 123343444444432 2567654 45666688899999999987654443
Q ss_pred EE
Q 002309 256 IA 257 (938)
Q Consensus 256 i~ 257 (938)
|.
T Consensus 224 vi 225 (295)
T 3hcw_A 224 TA 225 (295)
T ss_dssp EE
T ss_pred EE
Confidence 43
No 127
>3g85_A Transcriptional regulator (LACI family); transcription regulator, PSI-II, structural genomics structure initiative; 1.84A {Clostridium acetobutylicum atcc 824}
Probab=97.50 E-value=0.0004 Score=73.06 Aligned_cols=207 Identities=12% Similarity=0.047 Sum_probs=123.8
Q ss_pred CeeEEEEEEeeC--CCcchhHHHHHHHHHHHHHhcCCCCCCCCEEEEEEccCCCChHHHHHHHHHHHhcCcEEEEcCCCh
Q 002309 29 PAVVNVGALFTL--DSTIGRVAKIAIEEAVKDVNSNSSILHGTKLNITMQSSNCSGFIGMVEALRFMETDIVAIIGPQCS 106 (938)
Q Consensus 29 ~~~i~IG~i~~~--~~~~g~~~~~a~~~Av~~iN~~~~il~g~~l~~~~~D~~~~~~~a~~~a~~li~~~V~aviGp~~s 106 (938)
....+||+++|. +..+-.....+++-+.++. |+.+.+...+...+. ..+....+..++|.+||-....
T Consensus 9 ~~~~~Igvi~~~~~~~~~~~~~~~gi~~~a~~~--------g~~~~~~~~~~~~~~--~~~~~~~l~~~~vdgiIi~~~~ 78 (289)
T 3g85_A 9 QSKPTIALYWSSDISVNIISRFLRGLQSKLAKQ--------NYNYNVVICPYKTDC--LHLEKGISKENSFDAAIIANIS 78 (289)
T ss_dssp --CCEEEEEEETTSCGGGHHHHHHHHHHHHHHT--------TTCSEEEEEEECTTC--GGGCGGGSTTTCCSEEEESSCC
T ss_pred CCCceEEEEeccccchHHHHHHHHHHHHHHHHc--------CCeEEEEecCCCchh--HHHHHHHHhccCCCEEEEecCC
Confidence 456789999993 3444445566666665543 344444333222211 1122334445588877643333
Q ss_pred hHHHHHHHhhccCCccEEEcccCCCCCCCCCCCceEEecCCchHHHHHHHHHHHhcCCcEEEEEEEcC--ccccchHHHH
Q 002309 107 TVAHIVSYVSNELQVPLLSFGVTDPTLSSLQYPFFVRTTQSDSYQMTAVAEMVSYYGWNAVSVIFVDN--EYGRNGVSAL 184 (938)
Q Consensus 107 ~~~~~va~~~~~~~iP~Is~~~~~~~l~~~~~p~~~r~~ps~~~~~~ai~~~l~~~~w~~vaii~~d~--~~g~~~~~~l 184 (938)
.....+... ...++|+|...... +.+-.+..++...+..+++++...|.++++++..+. .......+.+
T Consensus 79 ~~~~~~~~~-~~~~iPvV~~~~~~--------~~~~~V~~D~~~~~~~a~~~L~~~G~~~i~~i~~~~~~~~~~~R~~gf 149 (289)
T 3g85_A 79 NYDLEYLNK-ASLTLPIILFNRLS--------NKYSSVNVDNYKMGEKASLLFAKKRYKSAAAILTESLNDAMDNRNKGF 149 (289)
T ss_dssp HHHHHHHHH-CCCSSCEEEESCCC--------SSSEEEEECHHHHHHHHHHHHHHTTCCBCEEEECCCSSHHHHHHHHHH
T ss_pred cccHHHHHh-ccCCCCEEEECCCC--------CCCCEEEeCHHHHHHHHHHHHHHcCCCEEEEEeCCcccccHHHHHHHH
Confidence 333333333 36799999875432 223456778888899999999889999999998543 3345667889
Q ss_pred HHHHhhcceEEEEEeecCCCCCCChhhHHHHHHHHhcC--CceEEEEEeChhhHHHHHHHHHHcCCCCCCeEEEE
Q 002309 185 NDKLAERRCRISYKSGIPPESGVNTGYVMDLLVKVALM--ESRVIVLHVSPSLGFQVFSVAKYLGMMGNGYVWIA 257 (938)
Q Consensus 185 ~~~l~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~lk~~--~~~viv~~~~~~~~~~~l~~a~~~g~~~~~~~wi~ 257 (938)
.+++++.|+.+.....+... .+..+....+.++-+. .+++|+ +.+...+..+++++++.|+..++-+-++
T Consensus 150 ~~~l~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~ai~-~~~d~~a~g~~~al~~~g~~vP~di~vi 221 (289)
T 3g85_A 150 IETCHKNGIKISENHIIAAE--NSIHGGVDAAKKLMKLKNTPKALF-CNSDSIALGVISVLNKRQISIPDDIEIV 221 (289)
T ss_dssp HHHHHHTTCBCCGGGEEECC--SSHHHHHHHHHHHTTSSSCCSEEE-ESSHHHHHHHHHHHHHTTCCTTTTCEEE
T ss_pred HHHHHHcCCCCChhheeccC--CCHHHHHHHHHHHHcCCCCCcEEE-EcCCHHHHHHHHHHHHcCCCCCCceEEE
Confidence 99999998764321111111 2244455556665543 456654 4566677889999999998765444333
No 128
>3qk7_A Transcriptional regulators; structural genomics, NEW YORK structural genomix research CO NYSGXRC, PSI-2, protein structur initiative; 2.70A {Yersinia pestis}
Probab=97.46 E-value=0.0014 Score=69.13 Aligned_cols=205 Identities=9% Similarity=0.002 Sum_probs=121.4
Q ss_pred eeEEEEEEeeC-----CCcchhHHHHHHHHHHHHHhcCCCCCCCCEEEEEEccCCCChHHHHHHHHHHHhcCcEEEEc-C
Q 002309 30 AVVNVGALFTL-----DSTIGRVAKIAIEEAVKDVNSNSSILHGTKLNITMQSSNCSGFIGMVEALRFMETDIVAIIG-P 103 (938)
Q Consensus 30 ~~i~IG~i~~~-----~~~~g~~~~~a~~~Av~~iN~~~~il~g~~l~~~~~D~~~~~~~a~~~a~~li~~~V~aviG-p 103 (938)
.+-+||+++|. +..+-.....+++-+.++. |+.+.+...+.... .......+..++|.+||- |
T Consensus 5 ~s~~Igvi~~~~~~~~~~~~~~~~~~gi~~~a~~~--------g~~~~~~~~~~~~~---~~~~~~~l~~~~vdGiIi~~ 73 (294)
T 3qk7_A 5 RTDAIALAYPSRPRVLNNSTFLEMISWIGIELGKR--------GLDLLLIPDEPGEK---YQSLIHLVETRRVDALIVAH 73 (294)
T ss_dssp CCCEEEEEEESCSGGGSCHHHHHHHHHHHHHHHHT--------TCEEEEEEECTTCC---CHHHHHHHHHTCCSEEEECS
T ss_pred ccceEEEEecCCCccccChhHHHHHHHHHHHHHHC--------CCEEEEEeCCChhh---HHHHHHHHHcCCCCEEEEeC
Confidence 35689999983 2333234445555444432 56666655543111 122233344557877763 3
Q ss_pred CChhHHHHHHHhhccCCccEEEcccCCCCCCCCCCCceEEecCCchHHHHHHHHHHHhcCCcEEEEEEEcCc--cccchH
Q 002309 104 QCSTVAHIVSYVSNELQVPLLSFGVTDPTLSSLQYPFFVRTTQSDSYQMTAVAEMVSYYGWNAVSVIFVDNE--YGRNGV 181 (938)
Q Consensus 104 ~~s~~~~~va~~~~~~~iP~Is~~~~~~~l~~~~~p~~~r~~ps~~~~~~ai~~~l~~~~w~~vaii~~d~~--~g~~~~ 181 (938)
..... .....+...++|+|......+ . +.+-.+..++...+...++++...|.++|+++..... ......
T Consensus 74 ~~~~~--~~~~~l~~~~iPvV~~~~~~~---~---~~~~~V~~D~~~~~~~a~~~L~~~G~~~I~~i~~~~~~~~~~~R~ 145 (294)
T 3qk7_A 74 TQPED--FRLQYLQKQNFPFLALGRSHL---P---KPYAWFDFDNHAGASLAVKRLLELGHQRIAFVSTDARISYVDQRL 145 (294)
T ss_dssp CCSSC--HHHHHHHHTTCCEEEESCCCC---S---SCCEEEEECHHHHHHHHHHHHHHTTCCCEEEEEESSCCHHHHHHH
T ss_pred CCCCh--HHHHHHHhCCCCEEEECCCCC---C---CCCCEEEcChHHHHHHHHHHHHHCCCceEEEEeCCcccchHHHHH
Confidence 32222 334456677999998754321 1 2234567788888899999988889999999986533 344567
Q ss_pred HHHHHHHhhcceEEEEEeecCCCCCCChhhHHHHHHHHhcC--CceEEEEEeChhhHHHHHHHHHHcCCCCCCeEEE
Q 002309 182 SALNDKLAERRCRISYKSGIPPESGVNTGYVMDLLVKVALM--ESRVIVLHVSPSLGFQVFSVAKYLGMMGNGYVWI 256 (938)
Q Consensus 182 ~~l~~~l~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~lk~~--~~~viv~~~~~~~~~~~l~~a~~~g~~~~~~~wi 256 (938)
+.+.+++++.|+.+.....+... .+..+....+.++-+. .+++|+ +++...+..+++++++.|+..++-+-+
T Consensus 146 ~Gf~~al~~~g~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~ai~-~~nd~~A~g~~~al~~~G~~vP~di~v 219 (294)
T 3qk7_A 146 QGYVQTMSEAGLMPLAGYLQKAD--PTRPGGYLAASRLLALEVPPTAII-TDCNMLGDGVASALDKAGLLGGEGISL 219 (294)
T ss_dssp HHHHHHHHTTTCCCCTTCEEEEC--SSHHHHHHHHHHHHHSSSCCSEEE-ESSHHHHHHHHHHHHHTTCSSTTSCEE
T ss_pred HHHHHHHHHCCCCCChhHeecCC--CCHHHHHHHHHHHHcCCCCCcEEE-ECCHHHHHHHHHHHHHcCCCCCCceEE
Confidence 88999999998764211111111 1233444445555433 456654 456677788999999999876543333
No 129
>3tb6_A Arabinose metabolism transcriptional repressor; transcription regulation, arabinose binding, DNA binding Pro; HET: ARB; 2.21A {Bacillus subtilis}
Probab=97.45 E-value=0.0012 Score=69.58 Aligned_cols=207 Identities=14% Similarity=0.071 Sum_probs=127.6
Q ss_pred EEEEEEeeCC-CcchhHHHHHHHHHHHHHhcCCCCCCCCEEEEEEccCCCChHHHHHHHHHHHhcCcEEEEc-CCChh--
Q 002309 32 VNVGALFTLD-STIGRVAKIAIEEAVKDVNSNSSILHGTKLNITMQSSNCSGFIGMVEALRFMETDIVAIIG-PQCST-- 107 (938)
Q Consensus 32 i~IG~i~~~~-~~~g~~~~~a~~~Av~~iN~~~~il~g~~l~~~~~D~~~~~~~a~~~a~~li~~~V~aviG-p~~s~-- 107 (938)
-+||++.|.. ..+-.....+++-+.++. |+++. +.++..++....+....++.+++.+||- |..+.
T Consensus 16 ~~Igvi~~~~~~~~~~~~~~gi~~~a~~~--------g~~~~--~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~~~~ 85 (298)
T 3tb6_A 16 KTIGVLTTYISDYIFPSIIRGIESYLSEQ--------GYSML--LTSTNNNPDNERRGLENLLSQHIDGLIVEPTKSALQ 85 (298)
T ss_dssp CEEEEEESCSSSTTHHHHHHHHHHHHHHT--------TCEEE--EEECTTCHHHHHHHHHHHHHTCCSEEEECCSSTTSC
T ss_pred ceEEEEeCCCCchHHHHHHHHHHHHHHHC--------CCEEE--EEeCCCChHHHHHHHHHHHHCCCCEEEEeccccccc
Confidence 6899999975 333345556666555542 45554 4566667777777777788888887764 33321
Q ss_pred -HHHHHHHhhccCCccEEEcccCCCCCCCCCCCceEEecCCchHHHHHHHHHHHhcCCcEEEEEEEcC-ccccchHHHHH
Q 002309 108 -VAHIVSYVSNELQVPLLSFGVTDPTLSSLQYPFFVRTTQSDSYQMTAVAEMVSYYGWNAVSVIFVDN-EYGRNGVSALN 185 (938)
Q Consensus 108 -~~~~va~~~~~~~iP~Is~~~~~~~l~~~~~p~~~r~~ps~~~~~~ai~~~l~~~~w~~vaii~~d~-~~g~~~~~~l~ 185 (938)
........+...++|+|......+.. .+..+..++...+..+++++...|.++++++.... .......+.+.
T Consensus 86 ~~~~~~~~~~~~~~iPvV~~~~~~~~~------~~~~V~~d~~~~~~~a~~~L~~~G~~~i~~i~~~~~~~~~~R~~gf~ 159 (298)
T 3tb6_A 86 TPNIGYYLNLEKNGIPFAMINASYAEL------AAPSFTLDDVKGGMMAAEHLLSLGHTHMMGIFKADDTQGVKRMNGFI 159 (298)
T ss_dssp CTTHHHHHHHHHTTCCEEEESSCCTTC------SSCEEEECHHHHHHHHHHHHHHTTCCSEEEEEESSSHHHHHHHHHHH
T ss_pred CCcHHHHHHHHhcCCCEEEEecCcCCC------CCCEEEeCcHHHHHHHHHHHHHCCCCcEEEEcCCCCccHHHHHHHHH
Confidence 33344555667899999875433221 12346678888899999999888999999998543 33445678899
Q ss_pred HHHhhcceEEEEEe--ecCCCCCCChhhHHHHHHHHhcC--C--ceEEEEEeChhhHHHHHHHHHHcCCCCCCeEEEE
Q 002309 186 DKLAERRCRISYKS--GIPPESGVNTGYVMDLLVKVALM--E--SRVIVLHVSPSLGFQVFSVAKYLGMMGNGYVWIA 257 (938)
Q Consensus 186 ~~l~~~g~~v~~~~--~~~~~~~~~~~d~~~~l~~lk~~--~--~~viv~~~~~~~~~~~l~~a~~~g~~~~~~~wi~ 257 (938)
+++++.|+.+.... ..... .........+.++-+. + +++|+ +.+...+..+++++++.|+..++-+-+.
T Consensus 160 ~~l~~~g~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~ai~-~~~d~~a~g~~~al~~~g~~vP~di~vv 234 (298)
T 3tb6_A 160 QAHRERELFPSPDMIVTFTTE--EKESKLLEKVKATLEKNSKHMPTAIL-CYNDEIALKVIDMLREMDLKVPEDMSIV 234 (298)
T ss_dssp HHHHHTTCCCCGGGEEEECHH--HHTTHHHHHHHHHHHHTTTSCCSEEE-CSSHHHHHHHHHHHHHTTCCTTTTCEEE
T ss_pred HHHHHcCCCCCcceEEEeccc--chhhhHHHHHHHHHhcCCCCCCeEEE-EeCcHHHHHHHHHHHHcCCCCCCceEEE
Confidence 99999887643111 11111 0011112333333222 2 56654 4455677789999999998765444444
No 130
>2dri_A D-ribose-binding protein; sugar transport; HET: RIP; 1.60A {Escherichia coli} SCOP: c.93.1.1 PDB: 1urp_A* 1ba2_A 1dbp_A* 1drj_A* 1drk_A* 2gx6_A*
Probab=97.36 E-value=0.015 Score=60.16 Aligned_cols=196 Identities=7% Similarity=0.056 Sum_probs=116.1
Q ss_pred EEEEEeeCC-CcchhHHHHHHHHHHHHHhcCCCCCCCCEEEEEEccCCCChHHHHHHHHHHHhcCcEEEEc-CCChhHHH
Q 002309 33 NVGALFTLD-STIGRVAKIAIEEAVKDVNSNSSILHGTKLNITMQSSNCSGFIGMVEALRFMETDIVAIIG-PQCSTVAH 110 (938)
Q Consensus 33 ~IG~i~~~~-~~~g~~~~~a~~~Av~~iN~~~~il~g~~l~~~~~D~~~~~~~a~~~a~~li~~~V~aviG-p~~s~~~~ 110 (938)
+||++.|.. .++-.....+++.+.++. |+++. +.++..++..-.+....++.++|.++|- |.......
T Consensus 3 ~Igvi~~~~~~~f~~~~~~gi~~~~~~~--------g~~~~--~~~~~~~~~~~~~~i~~l~~~~vdgiIi~~~~~~~~~ 72 (271)
T 2dri_A 3 TIALVVSTLNNPFFVSLKDGAQKEADKL--------GYNLV--VLDSQNNPAKELANVQDLTVRGTKILLINPTDSDAVG 72 (271)
T ss_dssp EEEEEESCSSSHHHHHHHHHHHHHHHHH--------TCEEE--EEECTTCHHHHHHHHHHHTTTTEEEEEECCSSTTTTH
T ss_pred EEEEEecCCCCHHHHHHHHHHHHHHHHc--------CcEEE--EeCCCCCHHHHHHHHHHHHHcCCCEEEEeCCChHHHH
Confidence 589998754 333334455555555543 44444 3556666665555566677778888763 43333222
Q ss_pred HHHHhhccCCccEEEcccCCCCCCCCCCCceEEecCCchHHHHHHHHHHHhc--CCcEEEEEEEcC--ccccchHHHHHH
Q 002309 111 IVSYVSNELQVPLLSFGVTDPTLSSLQYPFFVRTTQSDSYQMTAVAEMVSYY--GWNAVSVIFVDN--EYGRNGVSALND 186 (938)
Q Consensus 111 ~va~~~~~~~iP~Is~~~~~~~l~~~~~p~~~r~~ps~~~~~~ai~~~l~~~--~w~~vaii~~d~--~~g~~~~~~l~~ 186 (938)
.....+...++|+|......+ .. +..-.+..++..-+...++++... +-+++++|.... .......+.+.+
T Consensus 73 ~~~~~~~~~~iPvV~i~~~~~---~~--~~~~~V~~D~~~~g~~a~~~L~~~g~g~~~I~~i~g~~~~~~~~~R~~Gf~~ 147 (271)
T 2dri_A 73 NAVKMANQANIPVITLDRQAT---KG--EVVSHIASDNVLGGKIAGDYIAKKAGEGAKVIELQGIAGTSAARERGEGFQQ 147 (271)
T ss_dssp HHHHHHHHTTCCEEEESSCCS---SS--CCSEEEEECHHHHHHHHHHHHHHHHCTTCEEEEEECCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCcEEEecCCCC---CC--ceeEEEecChHHHHHHHHHHHHHHcCCCCeEEEEECCCCCccHhHHHHHHHH
Confidence 233445567999998743221 11 112235567777788888887665 568999998432 233456778999
Q ss_pred HHhhcceEEEEEeecCCCCCCChhhHHHHHHHHhc--CCceEEEEEeChhhHHHHHHHHHHcCC
Q 002309 187 KLAERRCRISYKSGIPPESGVNTGYVMDLLVKVAL--MESRVIVLHVSPSLGFQVFSVAKYLGM 248 (938)
Q Consensus 187 ~l~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~lk~--~~~~viv~~~~~~~~~~~l~~a~~~g~ 248 (938)
++++.|+.+..... . . .+...-...++++-+ ..++. |++.+...+..+++++++.|+
T Consensus 148 al~~~g~~~~~~~~-~-~--~~~~~~~~~~~~ll~~~~~~~a-i~~~nD~~A~g~~~al~~~g~ 206 (271)
T 2dri_A 148 AVAAHKFNVLASQP-A-D--FDRIKGLNVMQNLLTAHPDVQA-VFAQNDEMALGALRALQTAGK 206 (271)
T ss_dssp HHHHHTCEEEEEEE-C-T--TCHHHHHHHHHHHHHHCTTCCE-EEESSHHHHHHHHHHHHHHTC
T ss_pred HHhcCCCEEEEecC-C-C--CCHHHHHHHHHHHHHhCCCccE-EEECCCcHHHHHHHHHHHcCC
Confidence 99999987653221 1 1 123333344444432 24555 444555678889999999997
No 131
>2x26_A Periplasmic aliphatic sulphonates-binding protein; transport protein; 1.75A {Escherichia coli}
Probab=97.35 E-value=0.0015 Score=69.44 Aligned_cols=122 Identities=18% Similarity=0.262 Sum_probs=73.1
Q ss_pred CCCCChHHhhhCCCCeeEEeCchHHHHHH---Hhccccccccc-ccCCHHHHHHHHhcCCCCCceEEEEecchhHHHHHh
Q 002309 688 SPINGIESLRKSDDPIGYQEGSFAEYYLS---QELNISKSRLV-ALRTPEDYAKALKDGPGKGGVAAVVDERPYVELFLS 763 (938)
Q Consensus 688 ~~i~s~~dL~~~~~~i~~~~~s~~~~~~~---~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~g~~~a~i~~~~~~~~~~~ 763 (938)
.+|++++||. |++|++..|+....++. +..++....+. ...+..+...++.+ |++||++...+...+...
T Consensus 95 ~~i~s~~dL~--Gk~i~~~~gs~~~~~l~~~l~~~Gl~~~~v~~~~~~~~~~~~al~~----G~vDa~~~~~~~~~~~~~ 168 (308)
T 2x26_A 95 SPIKTVADLK--GHKVAFQKGSSSHNLLLRALRQAGLKFTDIQPTYLTPADARAAFQQ----GNVDAWAIWDPYYSAALL 168 (308)
T ss_dssp CSCCSGGGGT--TSEEEECTTSHHHHHHHHHHHHTTCCGGGSEEEECCHHHHHHHHHT----TSSSEEEEETTHHHHHHH
T ss_pred CCCCCHHHcC--CCEEeeeCCCcHHHHHHHHHHHcCCCHHHeEEEecChHHHHHHHHc----CCCCEEEecchhHHHHHh
Confidence 3688999998 88999987776554432 23344322221 23457888999999 899999988887766654
Q ss_pred cCCcEEEeCc--cccccceEeeec----CCCc-chhhHHHHHHh----hhccC-cHHHHHHhhcC
Q 002309 764 SQCSFRIVGQ--EFTKSGWGFAFP----RDSP-LAVDLSSAILE----LAENG-DLQRIHDKWLM 816 (938)
Q Consensus 764 ~~~~l~~~~~--~~~~~~~~~~~~----k~sp-l~~~i~~~il~----l~e~G-~~~~l~~~w~~ 816 (938)
+. .+.++.. .+....-.+++. +..| +...|++++.+ +.+++ ...++..+|+.
T Consensus 169 ~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~al~~a~~~~~~~~~~~~~~~~~~~~ 232 (308)
T 2x26_A 169 QG-GVRVLKDGTDLNQTGSFYLAARPYAEKNGAFIQGVLATFSEADALTRSQREQSIALLAKTMG 232 (308)
T ss_dssp HS-SEEEEEESTTSCCCCEEEEEEHHHHHHTHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHT
T ss_pred cC-CcEEEecCCCcCCcceEEEEcHHHHHHCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHhC
Confidence 43 3444322 222222223332 3334 77788877766 34443 34556666654
No 132
>3kjx_A Transcriptional regulator, LACI family; LACL family, protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.33A {Silicibacter pomeroyi}
Probab=97.34 E-value=0.0024 Score=69.06 Aligned_cols=208 Identities=8% Similarity=-0.017 Sum_probs=127.6
Q ss_pred eeEEEEEEeeCC-CcchhHHHHHHHHHHHHHhcCCCCCCCCEEEEEEccCCCChHHHHHHHHHHHhcCcEEEEcCCChhH
Q 002309 30 AVVNVGALFTLD-STIGRVAKIAIEEAVKDVNSNSSILHGTKLNITMQSSNCSGFIGMVEALRFMETDIVAIIGPQCSTV 108 (938)
Q Consensus 30 ~~i~IG~i~~~~-~~~g~~~~~a~~~Av~~iN~~~~il~g~~l~~~~~D~~~~~~~a~~~a~~li~~~V~aviGp~~s~~ 108 (938)
..-+||+++|.. .++-.....+++-+.+ . .|+.+. +.++..++..-.+....++.++|.+||-......
T Consensus 67 ~~~~Ig~i~~~~~~~~~~~~~~gi~~~a~----~----~g~~~~--~~~~~~~~~~~~~~i~~l~~~~vdGiIi~~~~~~ 136 (344)
T 3kjx_A 67 RVNLVAVIIPSLSNMVFPEVLTGINQVLE----D----TELQPV--VGVTDYLPEKEEKVLYEMLSWRPSGVIIAGLEHS 136 (344)
T ss_dssp CCSEEEEEESCSSSSSHHHHHHHHHHHHT----S----SSSEEE--EEECTTCHHHHHHHHHHHHTTCCSEEEEECSCCC
T ss_pred CCCEEEEEeCCCCcHHHHHHHHHHHHHHH----H----CCCEEE--EEeCCCCHHHHHHHHHHHHhCCCCEEEEECCCCC
Confidence 356899999864 3332333444443332 2 256554 4566667776666677777778877653221111
Q ss_pred HHHHHHhhccCCccEEEcccCCCCCCCCCCCceEEecCCchHHHHHHHHHHHhcCCcEEEEEEEcC---ccccchHHHHH
Q 002309 109 AHIVSYVSNELQVPLLSFGVTDPTLSSLQYPFFVRTTQSDSYQMTAVAEMVSYYGWNAVSVIFVDN---EYGRNGVSALN 185 (938)
Q Consensus 109 ~~~va~~~~~~~iP~Is~~~~~~~l~~~~~p~~~r~~ps~~~~~~ai~~~l~~~~w~~vaii~~d~---~~g~~~~~~l~ 185 (938)
. .....+...++|+|...... ..+....+..++...+...++++...|.+++++|.... .......+.+.
T Consensus 137 ~-~~~~~l~~~~iPvV~i~~~~------~~~~~~~V~~D~~~~~~~a~~~L~~~G~~~I~~i~~~~~~~~~~~~R~~Gf~ 209 (344)
T 3kjx_A 137 E-AARAMLDAAGIPVVEIMDSD------GKPVDAMVGISHRRAGREMAQAILKAGYRRIGFMGTKMPLDYRARKRFEGFT 209 (344)
T ss_dssp H-HHHHHHHHCSSCEEEEEECS------SCCSSEEEEECHHHHHHHHHHHHHHHTCCSCCEEESSTTTCHHHHHHHHHHH
T ss_pred H-HHHHHHHhCCCCEEEEeCCC------CCCCCCEEEECcHHHHHHHHHHHHHCCCCeEEEEecCcccCccHHHHHHHHH
Confidence 1 33455667899999874221 11223456678888888999988888999999998543 33456678899
Q ss_pred HHHhhcceEEEEEeecCCCCCCChhhHHHHHHHHhc--CCceEEEEEeChhhHHHHHHHHHHcCCCCCCeEEEE
Q 002309 186 DKLAERRCRISYKSGIPPESGVNTGYVMDLLVKVAL--MESRVIVLHVSPSLGFQVFSVAKYLGMMGNGYVWIA 257 (938)
Q Consensus 186 ~~l~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~lk~--~~~~viv~~~~~~~~~~~l~~a~~~g~~~~~~~wi~ 257 (938)
+++++.|+.+.....+... .+..+-...+.++-+ .+++.|+ +++...+..+++++++.|+..++-+-+.
T Consensus 210 ~al~~~g~~~~~~~~~~~~--~~~~~~~~~~~~ll~~~~~~~ai~-~~nd~~A~g~~~al~~~g~~vP~disvv 280 (344)
T 3kjx_A 210 EVLGKNGVEIEDREFYSGG--SALAKGREMTQAMLERSPDLDFLY-YSNDMIAAGGLLYLLEQGIDIPGQIGLA 280 (344)
T ss_dssp HHHHHTTCCCSCEEECSSC--CCHHHHHHHHHHHHHHSTTCCEEE-ESSHHHHHHHHHHHHHTTCCTTTTCEEE
T ss_pred HHHHHcCCCCChheEEeCC--CCHHHHHHHHHHHHhcCCCCCEEE-ECCHHHHHHHHHHHHHcCCCCCCceEEE
Confidence 9999999765432222222 223333344444432 2566655 4556678889999999998765544444
No 133
>3bil_A Probable LACI-family transcriptional regulator; structural genomics, unknown function, PSI-2, protein structure initiative; 2.50A {Corynebacterium glutamicum atcc 13032}
Probab=97.34 E-value=0.0054 Score=66.35 Aligned_cols=205 Identities=10% Similarity=0.011 Sum_probs=120.3
Q ss_pred eeEEEEEEeeCC-CcchhHHHHHHHHHHHHHhcCCCCCCCCEEEEEEccCCCChHHHHHHHHHHHhcCcEEEEcCCChhH
Q 002309 30 AVVNVGALFTLD-STIGRVAKIAIEEAVKDVNSNSSILHGTKLNITMQSSNCSGFIGMVEALRFMETDIVAIIGPQCSTV 108 (938)
Q Consensus 30 ~~i~IG~i~~~~-~~~g~~~~~a~~~Av~~iN~~~~il~g~~l~~~~~D~~~~~~~a~~~a~~li~~~V~aviGp~~s~~ 108 (938)
...+||++.|.. .++-.....+++.+.++. |+.+.+ .++..++.........++.++|.+||-......
T Consensus 65 ~s~~Igvi~~~~~~~~~~~~~~gi~~~a~~~--------g~~~~~--~~~~~~~~~~~~~~~~l~~~~vdgiI~~~~~~~ 134 (348)
T 3bil_A 65 RSNTIGVIVPSLINHYFAAMVTEIQSTASKA--------GLATII--TNSNEDATTMSGSLEFLTSHGVDGIICVPNEEC 134 (348)
T ss_dssp ---CEEEEESCSSSHHHHHHHHHHHHHHHHT--------TCCEEE--EECTTCHHHHHHHHHHHHHTTCSCEEECCCGGG
T ss_pred CCCEEEEEeCCCCCcHHHHHHHHHHHHHHHc--------CCEEEE--EeCCCCHHHHHHHHHHHHhCCCCEEEEeCCCCC
Confidence 356899999864 333334555655555431 454443 455566666556666677778887765333322
Q ss_pred HHHHHHhhccCCccEEEcccCCCCCCCCCCCceEEecCCchHHHHHHHHHHHhcCCcEEEEEEEcC--ccccchHHHHHH
Q 002309 109 AHIVSYVSNELQVPLLSFGVTDPTLSSLQYPFFVRTTQSDSYQMTAVAEMVSYYGWNAVSVIFVDN--EYGRNGVSALND 186 (938)
Q Consensus 109 ~~~va~~~~~~~iP~Is~~~~~~~l~~~~~p~~~r~~ps~~~~~~ai~~~l~~~~w~~vaii~~d~--~~g~~~~~~l~~ 186 (938)
. .....+...++|+|......+. . +.+-.+..++...+..++++|...|.++|++|..+. .......+.+.+
T Consensus 135 ~-~~~~~l~~~~iPvV~i~~~~~~--~---~~~~~V~~D~~~~~~~a~~~L~~~G~~~I~~i~~~~~~~~~~~R~~Gf~~ 208 (348)
T 3bil_A 135 A-NQLEDLQKQGMPVVLVDRELPG--D---STIPTATSNPQPGIAAAVELLAHNNALPIGYLSGPMDTSTGRERLEDFKA 208 (348)
T ss_dssp H-HHHHHHHHC-CCEEEESSCCSC--C----CCCEEEEECHHHHHHHHHHHHHTTCCSEEEECCCTTSHHHHHHHHHHHH
T ss_pred h-HHHHHHHhCCCCEEEEcccCCC--C---CCCCEEEeChHHHHHHHHHHHHHCCCCeEEEEeCCCCCccHHHHHHHHHH
Confidence 2 2333455679999987543221 0 112245567777788888888888999999998542 234566788999
Q ss_pred HHhhcceEEEEEeecCCCCCCChhhHHHHHHHHhcCC-ceEEEEEeChhhHHHHHHHHHHcCCCCCCeEEE
Q 002309 187 KLAERRCRISYKSGIPPESGVNTGYVMDLLVKVALME-SRVIVLHVSPSLGFQVFSVAKYLGMMGNGYVWI 256 (938)
Q Consensus 187 ~l~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~lk~~~-~~viv~~~~~~~~~~~l~~a~~~g~~~~~~~wi 256 (938)
++++.|+..... +... .+..+-...+.++-+.. + .|++.+...+..+++++++.|+..++-+-+
T Consensus 209 al~~~g~~~~~v--~~~~--~~~~~~~~~~~~ll~~~~~--ai~~~nD~~A~g~~~al~~~G~~vP~disv 273 (348)
T 3bil_A 209 ACANSKIGEQLV--FLGG--YEQSVGFEGATKLLDQGAK--TLFAGDSMMTIGVIEACHKAGLVIGKDVSV 273 (348)
T ss_dssp HHHHTTCCCCEE--ECCC--SSHHHHHHHHHHHHHTTCS--EEEESSHHHHHHHHHHHHHTTCCBTTTBEE
T ss_pred HHHHcCcCccEE--EcCC--CCHHHHHHHHHHHHcCCCC--EEEEcChHHHHHHHHHHHHcCCCCCCCeEE
Confidence 999998622111 1111 12333344455544333 4 344556667888999999999865543333
No 134
>3e61_A Putative transcriptional repressor of ribose OPER; structural genomics, DNA-binding, transcripti regulation, PSI-2; 2.00A {Staphylococcus saprophyticus subsp}
Probab=97.33 E-value=0.0025 Score=66.38 Aligned_cols=200 Identities=11% Similarity=0.048 Sum_probs=116.3
Q ss_pred eeEEEEEEeeCC-CcchhHHHHHHHHHHHHHhcCCCCCCCCEEEEEEccCCCChHHHHHHHHHHHhcCcEEEEcCCChhH
Q 002309 30 AVVNVGALFTLD-STIGRVAKIAIEEAVKDVNSNSSILHGTKLNITMQSSNCSGFIGMVEALRFMETDIVAIIGPQCSTV 108 (938)
Q Consensus 30 ~~i~IG~i~~~~-~~~g~~~~~a~~~Av~~iN~~~~il~g~~l~~~~~D~~~~~~~a~~~a~~li~~~V~aviGp~~s~~ 108 (938)
..-+||+++|.. ..+-.....+++-+.++. |+++ .+.++..++.........++.+++.+||-...+
T Consensus 7 ~~~~Ig~i~~~~~~~~~~~~~~gi~~~~~~~--------g~~~--~~~~~~~~~~~~~~~~~~l~~~~~dgiIi~~~~-- 74 (277)
T 3e61_A 7 KSKLIGLLLPDMSNPFFTLIARGVEDVALAH--------GYQV--LIGNSDNDIKKAQGYLATFVSHNCTGMISTAFN-- 74 (277)
T ss_dssp ---CEEEEESCTTSHHHHHHHHHHHHHHHHT--------TCCE--EEEECTTCHHHHHHHHHHHHHTTCSEEEECGGG--
T ss_pred CCCEEEEEECCCCCHHHHHHHHHHHHHHHHC--------CCEE--EEEeCCCCHHHHHHHHHHHHhCCCCEEEEecCC--
Confidence 457899999864 333334455555554442 3444 346666677666666677777788877643322
Q ss_pred HHHHHH-hhccCCccEEEcccCCCCCCCCCCCceEEecCCchHHHHHHHHHHHhcCCcEEEEEEEc--CccccchHHHHH
Q 002309 109 AHIVSY-VSNELQVPLLSFGVTDPTLSSLQYPFFVRTTQSDSYQMTAVAEMVSYYGWNAVSVIFVD--NEYGRNGVSALN 185 (938)
Q Consensus 109 ~~~va~-~~~~~~iP~Is~~~~~~~l~~~~~p~~~r~~ps~~~~~~ai~~~l~~~~w~~vaii~~d--~~~g~~~~~~l~ 185 (938)
... .. .+...++|+|......+. +. .+..++...+..+++++...|.++++++..+ ..........+.
T Consensus 75 ~~~-~~~~l~~~~iPvV~~~~~~~~------~~--~V~~D~~~~g~~a~~~L~~~G~~~i~~i~~~~~~~~~~~R~~gf~ 145 (277)
T 3e61_A 75 ENI-IENTLTDHHIPFVFIDRINNE------HN--GISTNHFKGGQLQAEVVRKGKGKNVLIVHENLLIDAFHQRVQGIK 145 (277)
T ss_dssp HHH-HHHHHHHC-CCEEEGGGCC-----------------HHHHHHHHHHHHHHTTCCSEEEEESCTTSHHHHHHHHHHH
T ss_pred hHH-HHHHHHcCCCCEEEEeccCCC------CC--eEEechHHHHHHHHHHHHHCCCCeEEEEeCCCCCccHHHHHHHHH
Confidence 222 33 566779999987554321 11 5677888888999999888899999999854 334456678899
Q ss_pred HHHhhcceEEEEEeecCCCCCCChhhHHHHHHHHhcCCceEEEEEeChhhHHHHHHHHHHcCCCCCCeEEEE
Q 002309 186 DKLAERRCRISYKSGIPPESGVNTGYVMDLLVKVALMESRVIVLHVSPSLGFQVFSVAKYLGMMGNGYVWIA 257 (938)
Q Consensus 186 ~~l~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~lk~~~~~viv~~~~~~~~~~~l~~a~~~g~~~~~~~wi~ 257 (938)
+++++.|+.+.. ...... +..+....+.+ ..++++|+. .+...+..+++++++.|+..++-+-++
T Consensus 146 ~~l~~~~~~~~~-~~~~~~---~~~~~~~~l~~--~~~~~ai~~-~~d~~a~g~~~al~~~g~~vP~di~vi 210 (277)
T 3e61_A 146 YILDQQRIDYKM-LEATLL---DNDKKFIDLIK--ELSIDSIIC-SNDLLAINVLGIVQRYHFKVPAEIQII 210 (277)
T ss_dssp HHHHC---CEEE-EEGGGG---GSHHHHHHHHH--HHTCCEEEE-SSHHHHHHHHHHHHHTTCCTTTTCEEE
T ss_pred HHHHHcCCCccc-eecCCC---CHHHHHHHhhc--CCCCCEEEE-CCcHHHHHHHHHHHHcCCCCCCceEEE
Confidence 999999887654 222111 11222222222 235666554 456677889999999998765444444
No 135
>3e3m_A Transcriptional regulator, LACI family; structural genomics, DNA-binding, plasmid, transcription regulation, PSI-2; 1.60A {Silicibacter pomeroyi}
Probab=97.26 E-value=0.0091 Score=64.70 Aligned_cols=209 Identities=10% Similarity=0.028 Sum_probs=125.7
Q ss_pred eeEEEEEEeeCCC-cchhHHHHHHHHHHHHHhcCCCCCCCCEEEEEEccCCCChHHHHHHHHHHHhcCcEEEEcCCChhH
Q 002309 30 AVVNVGALFTLDS-TIGRVAKIAIEEAVKDVNSNSSILHGTKLNITMQSSNCSGFIGMVEALRFMETDIVAIIGPQCSTV 108 (938)
Q Consensus 30 ~~i~IG~i~~~~~-~~g~~~~~a~~~Av~~iN~~~~il~g~~l~~~~~D~~~~~~~a~~~a~~li~~~V~aviGp~~s~~ 108 (938)
..-+||+++|... .+-.....+++-+.++. |+.+. +.++..++....+....++.++|.+||-......
T Consensus 69 ~~~~Igvi~~~~~~~~~~~~~~gi~~~a~~~--------g~~~~--~~~~~~~~~~~~~~~~~l~~~~vdGiI~~~~~~~ 138 (355)
T 3e3m_A 69 RSGFVGLLLPSLNNLHFAQTAQSLTDVLEQG--------GLQLL--LGYTAYSPEREEQLVETMLRRRPEAMVLSYDGHT 138 (355)
T ss_dssp --CEEEEEESCSBCHHHHHHHHHHHHHHHHT--------TCEEE--EEECTTCHHHHHHHHHHHHHTCCSEEEEECSCCC
T ss_pred CCCEEEEEeCCCCchHHHHHHHHHHHHHHHC--------CCEEE--EEeCCCChHHHHHHHHHHHhCCCCEEEEeCCCCC
Confidence 3567999998653 22223444444444332 45554 4566667766666666777778777653222212
Q ss_pred HHHHHHhhccCCccEEEcccCCCCCCCCCCCceEEecCCchHHHHHHHHHHHhcCCcEEEEEEEcCcc---ccchHHHHH
Q 002309 109 AHIVSYVSNELQVPLLSFGVTDPTLSSLQYPFFVRTTQSDSYQMTAVAEMVSYYGWNAVSVIFVDNEY---GRNGVSALN 185 (938)
Q Consensus 109 ~~~va~~~~~~~iP~Is~~~~~~~l~~~~~p~~~r~~ps~~~~~~ai~~~l~~~~w~~vaii~~d~~~---g~~~~~~l~ 185 (938)
. .....+...++|+|...... . .+....+..++...+..++++|...|.+++++|..+... .....+.+.
T Consensus 139 ~-~~~~~l~~~~iPvV~i~~~~---~---~~~~~~V~~D~~~~~~~a~~~L~~~G~r~I~~i~~~~~~~~~~~~R~~Gf~ 211 (355)
T 3e3m_A 139 E-QTIRLLQRASIPIVEIWEKP---A---HPIGHTVGFSNERAAYDMTNALLARGFRKIVFLGEKDDDWTRGAARRAGFK 211 (355)
T ss_dssp H-HHHHHHHHCCSCEEEESSCC---S---SCSSEEEECCHHHHHHHHHHHHHHTTCCSEEEEEESSCTTSHHHHHHHHHH
T ss_pred H-HHHHHHHhCCCCEEEECCcc---C---CCCCCEEEeChHHHHHHHHHHHHHCCCCeEEEEccCcccChhHHHHHHHHH
Confidence 2 33445667899999863221 1 122345677888888889999888999999999865432 456678899
Q ss_pred HHHhhcceEEEEEeecCCCCCCChhhHHHHHHHHhc--CCceEEEEEeChhhHHHHHHHHHHcCCCCCCeEEEE
Q 002309 186 DKLAERRCRISYKSGIPPESGVNTGYVMDLLVKVAL--MESRVIVLHVSPSLGFQVFSVAKYLGMMGNGYVWIA 257 (938)
Q Consensus 186 ~~l~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~lk~--~~~~viv~~~~~~~~~~~l~~a~~~g~~~~~~~wi~ 257 (938)
+++++.|+.+.....+.... .+..+-...+.++-+ ..+++|+ +.+...+..+++++++.|+..++-+-|+
T Consensus 212 ~al~~~g~~~~~~~~~~~~~-~~~~~~~~~~~~ll~~~~~~~ai~-~~nD~~A~g~~~al~~~G~~vP~disvi 283 (355)
T 3e3m_A 212 RAMREAGLNPDQEIRLGAPP-LSIEDGVAAAELILQEYPDTDCIF-CVSDMPAFGLLSRLKSIGVAVPEQVSVV 283 (355)
T ss_dssp HHHHHTTSCSCCEEEESCSS-CCHHHHHHHHHHHHHHCTTCCEEE-ESSHHHHHHHHHHHHHHTCCTTTTCEEE
T ss_pred HHHHHCCcCCCccEEEecCC-CCHHHHHHHHHHHHcCCCCCcEEE-ECChHHHHHHHHHHHHcCCCCCCceEEE
Confidence 99999997643211121110 123333344444433 3566655 4556677789999999998765444443
No 136
>3cs3_A Sugar-binding transcriptional regulator, LACI FAM; structural genomics, sugar-binding transcriptional regulator structure initiative; 2.40A {Enterococcus faecalis}
Probab=97.25 E-value=0.011 Score=61.39 Aligned_cols=197 Identities=8% Similarity=-0.062 Sum_probs=116.9
Q ss_pred eeEEEEEEeeCC-CcchhHHHHHHHHHHHHHhcCCCCCCCCEEEEEEccCCCChHHHHHHHHHHHhcCcEEEEc-CCChh
Q 002309 30 AVVNVGALFTLD-STIGRVAKIAIEEAVKDVNSNSSILHGTKLNITMQSSNCSGFIGMVEALRFMETDIVAIIG-PQCST 107 (938)
Q Consensus 30 ~~i~IG~i~~~~-~~~g~~~~~a~~~Av~~iN~~~~il~g~~l~~~~~D~~~~~~~a~~~a~~li~~~V~aviG-p~~s~ 107 (938)
.+.+||++.|.. ..+-.....+++-+.++ .|+.+.+.. +..++..-. ++ +|.+||- |....
T Consensus 7 ~~~~Igvi~~~~~~~~~~~~~~gi~~~a~~--------~g~~~~~~~--~~~~~~~~~----~~---~vdgiI~~~~~~~ 69 (277)
T 3cs3_A 7 QTNIIGVYLADYGGSFYGELLEGIKKGLAL--------FDYEMIVCS--GKKSHLFIP----EK---MVDGAIILDWTFP 69 (277)
T ss_dssp CCCEEEEEECSSCTTTHHHHHHHHHHHHHT--------TTCEEEEEE--STTTTTCCC----TT---TCSEEEEECTTSC
T ss_pred CCcEEEEEecCCCChhHHHHHHHHHHHHHH--------CCCeEEEEe--CCCCHHHHh----hc---cccEEEEecCCCC
Confidence 456899999863 33333445555544443 256665543 332221111 01 6666653 32222
Q ss_pred HHHHHHHhhccCCccEEEcccCCCCCCCCCCCceEEecCCchHHHHHHHHHHHhcCCcEEEEEEEcC--ccccchHHHHH
Q 002309 108 VAHIVSYVSNELQVPLLSFGVTDPTLSSLQYPFFVRTTQSDSYQMTAVAEMVSYYGWNAVSVIFVDN--EYGRNGVSALN 185 (938)
Q Consensus 108 ~~~~va~~~~~~~iP~Is~~~~~~~l~~~~~p~~~r~~ps~~~~~~ai~~~l~~~~w~~vaii~~d~--~~g~~~~~~l~ 185 (938)
...+ ..+...++|+|......+ + +.+..+..++...+..+++.+...|.+++++|..+. .........+.
T Consensus 70 -~~~~-~~l~~~~iPvV~~~~~~~---~---~~~~~V~~D~~~~~~~a~~~L~~~G~~~i~~i~~~~~~~~~~~R~~gf~ 141 (277)
T 3cs3_A 70 -TKEI-EKFAERGHSIVVLDRTTE---H---RNIRQVLLDNRGGATQAIEQFVNVGSKKVLLLSGPEKGYDSQERLAVST 141 (277)
T ss_dssp -HHHH-HHHHHTTCEEEESSSCCC---S---TTEEEEEECHHHHHHHHHHHHHHTTCSCEEEEECCTTSHHHHHHHHHHH
T ss_pred -HHHH-HHHHhcCCCEEEEecCCC---C---CCCCEEEeCcHHHHHHHHHHHHHcCCceEEEEeCCccCccHHHHHHHHH
Confidence 2233 334557999998743221 1 234566778888888888988888999999998543 23456678899
Q ss_pred HHHhhcceEEEEEeecCCCCCCChhhHHHHHHHHhcC---CceEEEEEeChhhHHHHHHHHHHcCCCCCCeEEEE
Q 002309 186 DKLAERRCRISYKSGIPPESGVNTGYVMDLLVKVALM---ESRVIVLHVSPSLGFQVFSVAKYLGMMGNGYVWIA 257 (938)
Q Consensus 186 ~~l~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~lk~~---~~~viv~~~~~~~~~~~l~~a~~~g~~~~~~~wi~ 257 (938)
+++++.|+.+. .. ... .+..+....+.++-+. ++++|+ +.+...+..+++++++.|+..++-+.+.
T Consensus 142 ~~l~~~g~~~~-~~--~~~--~~~~~~~~~~~~~l~~~~~~~~ai~-~~~d~~a~g~~~al~~~g~~vP~di~vv 210 (277)
T 3cs3_A 142 RELTRFGIPYE-II--QGD--FTEPSGYAAAKKILSQPQTEPVDVF-AFNDEMAIGVYKYVAETNYQMGKDIRII 210 (277)
T ss_dssp HHHHHTTCCEE-EE--ECC--SSHHHHHHHHHHHTTSCCCSSEEEE-ESSHHHHHHHHHHHTTSSCCBTTTEEEE
T ss_pred HHHHHcCCCee-EE--eCC--CChhHHHHHHHHHHhcCCCCCcEEE-EcChHHHHHHHHHHHHcCCCCCCcEEEE
Confidence 99999998765 11 111 2244444556666544 456654 4455667789999999998655444444
No 137
>3un6_A Hypothetical protein saouhsc_00137; structural genomics, center for structural genomics of infec diseases, csgid; 2.01A {Staphylococcus aureus subsp}
Probab=97.24 E-value=0.00059 Score=73.81 Aligned_cols=122 Identities=12% Similarity=0.154 Sum_probs=75.2
Q ss_pred CCCCChHHh-hhCCCCeeEEeCchHHHHH----HHhccccc--ccccccCCHHHHHHHHhcCCCCCceEEEEecchhHHH
Q 002309 688 SPINGIESL-RKSDDPIGYQEGSFAEYYL----SQELNISK--SRLVALRTPEDYAKALKDGPGKGGVAAVVDERPYVEL 760 (938)
Q Consensus 688 ~~i~s~~dL-~~~~~~i~~~~~s~~~~~~----~~~~~~~~--~~~~~~~~~~~~~~~l~~~~~~g~~~a~i~~~~~~~~ 760 (938)
.+|++++|| . |++|++..++....++ .+..++.. .+++.+ +..+...++.+ |++||++...++...
T Consensus 143 s~I~s~~DL~k--Gk~i~v~~~~s~~~~~~~~~l~~~Gl~~~dv~~~~~-~~~~~~~al~~----G~vDa~~~~~p~~~~ 215 (341)
T 3un6_A 143 MHLNEFNNNGD--DYHFGIPHRYSTHYLLLEELRKQLKIKPGHFSYHEM-SPAEMPAALSE----HRITGYSVAEPFGAL 215 (341)
T ss_dssp CCGGGCCSSSS--CEEEEESCSSSHHHHHHHHHHHHTTCCTTSEEEEEC-CGGGHHHHHHT----TSCSEEEEETTHHHH
T ss_pred CCCCCHHHhCC--CCEEEECCCCCHHHHHHHHHHHHcCCCHHHeEEEEc-ChHHHHHHHHc----CCCCEEEecCCHHHH
Confidence 468899999 6 8899998754333322 13344432 233444 46788899999 899999998888776
Q ss_pred HHhcCC-cEEEeCccc-ccc-ceEeeecCC----Cc-----chhhHHHHHHhhhccCcHHHHHHhhcC
Q 002309 761 FLSSQC-SFRIVGQEF-TKS-GWGFAFPRD----SP-----LAVDLSSAILELAENGDLQRIHDKWLM 816 (938)
Q Consensus 761 ~~~~~~-~l~~~~~~~-~~~-~~~~~~~k~----sp-----l~~~i~~~il~l~e~G~~~~l~~~w~~ 816 (938)
...+.. +.......+ ... ..+++++++ .| +...+++++.++.+++.-.++..+|+.
T Consensus 216 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~p~~v~~~~~a~~~a~~~~~~~~~~~~~~~~~~~ 283 (341)
T 3un6_A 216 GEKLGKGKTLKHGDDVIPDAYCCVLVLRGELLDQHKDVAQAFVQDYKKSGFKMNDRKQSVDIMTHHFK 283 (341)
T ss_dssp HHHSSCCEEEEEGGGTSTTCCCEEEEECHHHHHHCHHHHHHHHHHHHHHHHHTTSHHHHHHHHHHHSS
T ss_pred HHhcCCeEEEEeccccCCCCceEEEEECHHHHHHCHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHhC
Confidence 655543 332222222 222 245666654 34 566666777777777643366666765
No 138
>3ksx_A Nitrate transport protein; SSUA, alkanesulfonate-binding protein, periplasmic-binding P transport protein; HET: MPO; 1.70A {Xanthomonas axonopodis PV} PDB: 3e4r_A* 3ksj_A*
Probab=97.23 E-value=0.0026 Score=68.04 Aligned_cols=93 Identities=22% Similarity=0.254 Sum_probs=58.5
Q ss_pred CCCCChHHhhhCCCCeeEEeCchHHHHHH---Hhcccccc--cccccCCHHHHHHHHhcCCCCCceEEEEecchhHHHHH
Q 002309 688 SPINGIESLRKSDDPIGYQEGSFAEYYLS---QELNISKS--RLVALRTPEDYAKALKDGPGKGGVAAVVDERPYVELFL 762 (938)
Q Consensus 688 ~~i~s~~dL~~~~~~i~~~~~s~~~~~~~---~~~~~~~~--~~~~~~~~~~~~~~l~~~~~~g~~~a~i~~~~~~~~~~ 762 (938)
.+|++++||. |++|++..|+....++. +..++... +++.+ +..+...+|.+ |++||++...++.....
T Consensus 121 s~I~s~~DLk--Gk~i~v~~gs~~~~~~~~~l~~~Gl~~~~v~~v~~-~~~~~~~al~~----G~vDa~~~~~p~~~~~~ 193 (324)
T 3ksx_A 121 SALRTVADLK--GKRIAFQKGSSAHNLLLRVLAKSGLSMRDITPLYL-SPANARAAFAA----GQVDAWAIWDPWYSALT 193 (324)
T ss_dssp CSCCSGGGGT--TCEEEECTTSHHHHHHHHHHHHTTCCGGGSEEEEC-CHHHHHHHHHT----TCCSEEEEETTHHHHHH
T ss_pred CCCCCHHHhC--CCEEEecCCChHHHHHHHHHHHcCCCHHHeEEEeC-CHHHHHHHHHc----CCCCEEEEccHHHHHHH
Confidence 4799999998 99999987775544332 23343322 22333 67889999999 89999988888776655
Q ss_pred hcCC-cEEEeCccccccceEeeecCC
Q 002309 763 SSQC-SFRIVGQEFTKSGWGFAFPRD 787 (938)
Q Consensus 763 ~~~~-~l~~~~~~~~~~~~~~~~~k~ 787 (938)
.+.. +.......+......+++++.
T Consensus 194 ~~~~~~~l~~~~~~~~~~~~~~~~~~ 219 (324)
T 3ksx_A 194 LDGSARLLANGEGLGLTGGFFLSSRR 219 (324)
T ss_dssp HTTSEEEEEESTTSCCCCEEEEEEHH
T ss_pred hcCCcEEEecccccCCCccEEEECHH
Confidence 5432 333333333333445555543
No 139
>3hs3_A Ribose operon repressor; PSI-II, NYSGXRC, periplasmic binding protein, structural genomics, protein structure initiative; 1.60A {Lactobacillus acidophilus}
Probab=97.23 E-value=0.005 Score=64.12 Aligned_cols=199 Identities=11% Similarity=0.060 Sum_probs=127.1
Q ss_pred CeeEEEEEEeeCC-CcchhHHHHHHHHHHHHHhcCCCCCCCCEEEEEEccCCCChHHHHHHHHHHHhcCcEEEEcCCChh
Q 002309 29 PAVVNVGALFTLD-STIGRVAKIAIEEAVKDVNSNSSILHGTKLNITMQSSNCSGFIGMVEALRFMETDIVAIIGPQCST 107 (938)
Q Consensus 29 ~~~i~IG~i~~~~-~~~g~~~~~a~~~Av~~iN~~~~il~g~~l~~~~~D~~~~~~~a~~~a~~li~~~V~aviGp~~s~ 107 (938)
..+-+||+++|.. .++-.....+++-+.++. |+.+ +.+.++..++..-.+....++.++|.+||-..
T Consensus 8 ~~~~~Igvi~~~~~~~~~~~~~~gi~~~a~~~--------g~~~-~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~--- 75 (277)
T 3hs3_A 8 KKSKMIGIIIPDLNNRFYAQIIDGIQEVIQKE--------GYTA-LISFSTNSDVKKYQNAIINFENNNVDGIITSA--- 75 (277)
T ss_dssp CCCCEEEEEESCTTSHHHHHHHHHHHHHHHHT--------TCEE-EEEECSSCCHHHHHHHHHHHHHTTCSEEEEEC---
T ss_pred CCCCEEEEEeCCCCChhHHHHHHHHHHHHHHC--------CCCE-EEEEeCCCChHHHHHHHHHHHhCCCCEEEEcc---
Confidence 3467899999864 333334455555544432 4550 33466667777766667777777887776422
Q ss_pred HHHHHHHhhccCCccEEEcccCCCCCCCCCCCceEEecCCchHHHHHHHHHHHhcCCcEEEEEEEc--CccccchHHHHH
Q 002309 108 VAHIVSYVSNELQVPLLSFGVTDPTLSSLQYPFFVRTTQSDSYQMTAVAEMVSYYGWNAVSVIFVD--NEYGRNGVSALN 185 (938)
Q Consensus 108 ~~~~va~~~~~~~iP~Is~~~~~~~l~~~~~p~~~r~~ps~~~~~~ai~~~l~~~~w~~vaii~~d--~~~g~~~~~~l~ 185 (938)
.....+...++|+|.....+ ..+ +.+ .+..++...+...++++. .|.++++++... ........+.+.
T Consensus 76 ---~~~~~~~~~~iPvV~~~~~~--~~~---~~~-~V~~D~~~~g~~a~~~L~-~G~~~I~~i~~~~~~~~~~~R~~Gf~ 145 (277)
T 3hs3_A 76 ---FTIPPNFHLNTPLVMYDSAN--IND---DIV-RIVSNNTKGGKESIKLLS-KKIEKVLIQHWPLSLPTIRERIEAMT 145 (277)
T ss_dssp ---CCCCTTCCCSSCEEEESCCC--CCS---SSE-EEEECHHHHHHHHHHTSC-TTCCEEEEEESCTTSHHHHHHHHHHH
T ss_pred ---hHHHHHHhCCCCEEEEcccc--cCC---CCE-EEEEChHHHHHHHHHHHH-hCCCEEEEEeCCCcCccHHHHHHHHH
Confidence 11234567799999875431 111 234 677888888888999888 999999999854 334556678899
Q ss_pred HHHhhcceEEEEEeecCCCCCCChhhHHHHHHHHhc--CCceEEEEEeChhhHHHHHHHHHHcCCCCCCeEEEE
Q 002309 186 DKLAERRCRISYKSGIPPESGVNTGYVMDLLVKVAL--MESRVIVLHVSPSLGFQVFSVAKYLGMMGNGYVWIA 257 (938)
Q Consensus 186 ~~l~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~lk~--~~~~viv~~~~~~~~~~~l~~a~~~g~~~~~~~wi~ 257 (938)
+++++.|+.+... ..... . + ...+.++-+ .++++|+ +.+...+..+++++++.|+..++-+-+.
T Consensus 146 ~~l~~~g~~~~~~-~~~~~----~-~-~~~~~~~l~~~~~~~ai~-~~~d~~A~g~~~al~~~g~~vP~di~vi 211 (277)
T 3hs3_A 146 AEASKLKIDYLLE-ETPEN----N-P-YISAQSALNKSNQFDAII-TVNDLYAAEIIKEAKRRNLKIPDDFQLV 211 (277)
T ss_dssp HHHHHTTCEEEEE-ECCSS----C-H-HHHHHHHHHTGGGCSEEE-CSSHHHHHHHHHHHHHTTCCTTTTCEEE
T ss_pred HHHHHCCCCCCCC-CccCC----c-h-HHHHHHHHcCCCCCCEEE-ECCHHHHHHHHHHHHHcCCCCCCceEEE
Confidence 9999999887654 33222 1 1 334444433 3466654 4455677889999999998765444444
No 140
>1byk_A Protein (trehalose operon repressor); LACI family, phosphate binding, protein structure, trehalose repressor, gene regulation; HET: T6P; 2.50A {Escherichia coli} SCOP: c.93.1.1
Probab=97.21 E-value=0.014 Score=59.66 Aligned_cols=195 Identities=12% Similarity=0.025 Sum_probs=120.5
Q ss_pred EEEEEeeCC-CcchhHHHHHHHHHHHHHhcCCCCCCCCEEEEEEccCCCChHHHHHHHHHHHhcCcEEEEc-CCChhHHH
Q 002309 33 NVGALFTLD-STIGRVAKIAIEEAVKDVNSNSSILHGTKLNITMQSSNCSGFIGMVEALRFMETDIVAIIG-PQCSTVAH 110 (938)
Q Consensus 33 ~IG~i~~~~-~~~g~~~~~a~~~Av~~iN~~~~il~g~~l~~~~~D~~~~~~~a~~~a~~li~~~V~aviG-p~~s~~~~ 110 (938)
+||++.|.. .++-.....+++-+.++. |+.+.+ .++..++..-.+....+..++|.++|- |......
T Consensus 4 ~Igvi~~~~~~~~~~~~~~gi~~~~~~~--------g~~~~~--~~~~~~~~~~~~~~~~l~~~~vdgiI~~~~~~~~~- 72 (255)
T 1byk_A 4 VVAIIVTRLDSLSENLAVQTMLPAFYEQ--------GYDPIM--MESQFSPQLVAEHLGVLKRRNIDGVVLFGFTGITE- 72 (255)
T ss_dssp EEEEEESCTTCHHHHHHHHHHHHHHHHH--------TCEEEE--EECTTCHHHHHHHHHHHHTTTCCEEEEECCTTCCT-
T ss_pred EEEEEeCCCCCccHHHHHHHHHHHHHHc--------CCEEEE--EeCCCcHHHHHHHHHHHHhcCCCEEEEecCccccH-
Confidence 689999854 333334555666555543 454444 455566665555566667778877663 2222111
Q ss_pred HHHHhhccCCccEEEcccCCCCCCCCCCCceEEecCCchHHHHHHHHHHHhcCCcEEEEEEEc--C-ccccchHHHHHHH
Q 002309 111 IVSYVSNELQVPLLSFGVTDPTLSSLQYPFFVRTTQSDSYQMTAVAEMVSYYGWNAVSVIFVD--N-EYGRNGVSALNDK 187 (938)
Q Consensus 111 ~va~~~~~~~iP~Is~~~~~~~l~~~~~p~~~r~~ps~~~~~~ai~~~l~~~~w~~vaii~~d--~-~~g~~~~~~l~~~ 187 (938)
......++|+|...... +.+-.+..++...+..+++++...|.++|+++..+ + .......+.+.++
T Consensus 73 ---~~l~~~~~pvV~~~~~~--------~~~~~V~~d~~~~~~~a~~~L~~~G~~~I~~i~~~~~~~~~~~~R~~gf~~a 141 (255)
T 1byk_A 73 ---EMLAHWQSSLVLLARDA--------KGFASVCYDDEGAIKILMQRLYDQGHRNISYLGVPHSDVTTGKRRHEAYLAF 141 (255)
T ss_dssp ---TTSGGGSSSEEEESSCC--------SSCEEEEECHHHHHHHHHHHHHHTTCCCEEEECCCTTSTTTTHHHHHHHHHH
T ss_pred ---HHHHhcCCCEEEEcccc--------CCCCEEEEccHHHHHHHHHHHHHcCCCeEEEEecCCCCcccHHHHHHHHHHH
Confidence 23445689999864321 12345667788888889998888899999999853 2 3445667889999
Q ss_pred HhhcceEEEEEeecCCCCCCChhhHHHHHHHHhcCCceEEEEEeChhhHHHHHHHHHHcCCCCCCeEEEE
Q 002309 188 LAERRCRISYKSGIPPESGVNTGYVMDLLVKVALMESRVIVLHVSPSLGFQVFSVAKYLGMMGNGYVWIA 257 (938)
Q Consensus 188 l~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~lk~~~~~viv~~~~~~~~~~~l~~a~~~g~~~~~~~wi~ 257 (938)
+++.|+.+.. +... .+..+....++++-+.++++|+. ++...+..+++++++.|+ .+...++
T Consensus 142 l~~~g~~~~~---~~~~--~~~~~~~~~~~~~l~~~~~ai~~-~~d~~A~g~~~al~~~g~--~di~vig 203 (255)
T 1byk_A 142 CKAHKLHPVA---ALPG--LAMKQGYENVAKVITPETTALLC-ATDTLALGASKYLQEQRI--DTLQLAS 203 (255)
T ss_dssp HHHTTCCCEE---ECCC--SCHHHHHHHSGGGCCTTCCEEEE-SSHHHHHHHHHHHHHTTC--CSCEEEE
T ss_pred HHHcCCCcce---eecC--CccchHHHHHHHHhcCCCCEEEE-eChHHHHHHHHHHHHcCC--CcEEEEE
Confidence 9999876431 2211 22333444455554456777554 455678889999999997 3444444
No 141
>3uug_A Multiple sugar-binding periplasmic receptor CHVE; periplasmic binding protein, sugar-binding protein, sugar binding protein; HET: BDP; 1.75A {Agrobacterium tumefaciens} PDB: 3urm_A*
Probab=97.21 E-value=0.0064 Score=65.11 Aligned_cols=205 Identities=9% Similarity=-0.056 Sum_probs=126.9
Q ss_pred eEEEEEEeeCC-CcchhHHHHHHHHHHHHHhcCCCCCCCCEEEEEEccCCCChHHHHHHHHHHHhcCcEEEE-cCCChhH
Q 002309 31 VVNVGALFTLD-STIGRVAKIAIEEAVKDVNSNSSILHGTKLNITMQSSNCSGFIGMVEALRFMETDIVAII-GPQCSTV 108 (938)
Q Consensus 31 ~i~IG~i~~~~-~~~g~~~~~a~~~Av~~iN~~~~il~g~~l~~~~~D~~~~~~~a~~~a~~li~~~V~avi-Gp~~s~~ 108 (938)
..+||++.|.. .++-.....+++-+.++. |+++. +.++..++..-.+....++.++|.+|| .|..+..
T Consensus 3 ~~~Igvi~~~~~~~~~~~~~~gi~~~a~~~--------g~~~~--~~~~~~~~~~~~~~i~~~~~~~vdgiIi~~~~~~~ 72 (330)
T 3uug_A 3 KGSVGIAMPTKSSARWIDDGNNIVKQLQEA--------GYKTD--LQYADDDIPNQLSQIENMVTKGVKVLVIASIDGTT 72 (330)
T ss_dssp CCEEEEEECCSSSTHHHHHHHHHHHHHHHT--------TCEEE--EEECTTCHHHHHHHHHHHHHHTCSEEEECCSSGGG
T ss_pred CcEEEEEeCCCcchHHHHHHHHHHHHHHHc--------CCEEE--EeeCCCCHHHHHHHHHHHHHcCCCEEEEEcCCchh
Confidence 46899999975 333344556666665552 45544 455777888777788888888888776 4555444
Q ss_pred HHHHHHhhccCCccEEEcccCCCCCCCCCCCceEEecCCchHHHHHHHHHHHh-------cCCcEEEEEEEcC--ccccc
Q 002309 109 AHIVSYVSNELQVPLLSFGVTDPTLSSLQYPFFVRTTQSDSYQMTAVAEMVSY-------YGWNAVSVIFVDN--EYGRN 179 (938)
Q Consensus 109 ~~~va~~~~~~~iP~Is~~~~~~~l~~~~~p~~~r~~ps~~~~~~ai~~~l~~-------~~w~~vaii~~d~--~~g~~ 179 (938)
.......+...++|+|......+.. . +....+..++...+...++++.. .|.++++++.... .....
T Consensus 73 ~~~~~~~~~~~giPvV~~~~~~~~~--~--~~~~~V~~D~~~~g~~a~~~l~~~~~~~~~~G~~~i~~i~g~~~~~~~~~ 148 (330)
T 3uug_A 73 LSDVLKQAGEQGIKVIAYDRLIRNS--G--DVSYYATFDNFQVGVLQATSITDKLGLKDGKGPFNIELFGGSPDDNNAFF 148 (330)
T ss_dssp GHHHHHHHHHTTCEEEEESSCCCSC--T--TCCEEEEECHHHHHHHHHHHHHHHHTGGGTCCCEEEEECBCCTTCHHHHH
T ss_pred HHHHHHHHHHCCCCEEEECCCCCCC--C--ceeEEEEeCHHHHHHHHHHHHHHHhcccCCCCceEEEEEECCCCCchHHH
Confidence 4555566777899999875433221 1 12234566778888888888776 6888999997432 23445
Q ss_pred hHHHHHHHHhhc---c-eEEEEEe-----ecCCCCCCChhhHHHHHHHHhc-----CCceEEEEEeChhhHHHHHHHHHH
Q 002309 180 GVSALNDKLAER---R-CRISYKS-----GIPPESGVNTGYVMDLLVKVAL-----MESRVIVLHVSPSLGFQVFSVAKY 245 (938)
Q Consensus 180 ~~~~l~~~l~~~---g-~~v~~~~-----~~~~~~~~~~~d~~~~l~~lk~-----~~~~viv~~~~~~~~~~~l~~a~~ 245 (938)
..+.+.+++++. | +.+.... ..... .+.+.....+.++-+ ..+++|+ +.+...+..+++++++
T Consensus 149 R~~Gf~~al~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~ai~-~~nd~~A~g~~~al~~ 225 (330)
T 3uug_A 149 FYDGAMSVLKPYIDSGKLVVKSGQMGMDKVGTLR--WDPATAQARMDNLLSAYYTDAKVDAVL-SPYDGLSIGIISSLKG 225 (330)
T ss_dssp HHHHHHHHHHHHHHHTSEECTTCCCSHHHHBCGG--GCHHHHHHHHHHHHHHHCSSSCCCEEE-CSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccccCceEEeecccccccccCCC--CCHHHHHHHHHHHHHhcCCCCCeEEEE-ECCCchHHHHHHHHHH
Confidence 667888888876 3 5543110 00011 112333333444433 4556543 4455677889999999
Q ss_pred cCCCCCC
Q 002309 246 LGMMGNG 252 (938)
Q Consensus 246 ~g~~~~~ 252 (938)
.|+..+.
T Consensus 226 ~g~~vP~ 232 (330)
T 3uug_A 226 VGYGTKD 232 (330)
T ss_dssp TTCSSSS
T ss_pred cCCCCCC
Confidence 9986543
No 142
>1gud_A ALBP, D-allose-binding periplasmic protein; periplasmic binding protein, X-RAY crystallography, hinge bending, conformational change; 1.7A {Escherichia coli} SCOP: c.93.1.1 PDB: 1gub_A 1rpj_A*
Probab=97.19 E-value=0.019 Score=60.06 Aligned_cols=209 Identities=11% Similarity=0.030 Sum_probs=120.8
Q ss_pred EEEEEeeCC-CcchhHHHHHHHHHHHHHhcCCCCCCCCEEEEEEcc--CCCChHHHHHHHHHHHhcCcEEEE-cCCChhH
Q 002309 33 NVGALFTLD-STIGRVAKIAIEEAVKDVNSNSSILHGTKLNITMQS--SNCSGFIGMVEALRFMETDIVAII-GPQCSTV 108 (938)
Q Consensus 33 ~IG~i~~~~-~~~g~~~~~a~~~Av~~iN~~~~il~g~~l~~~~~D--~~~~~~~a~~~a~~li~~~V~avi-Gp~~s~~ 108 (938)
+||++.|.. .++-.....+++.+.++. |+.+. +.+ +..++..-......++.++|.+|| .|.....
T Consensus 3 ~Igvi~~~~~~~f~~~~~~gi~~~a~~~--------g~~~~--~~~~~~~~~~~~~~~~~~~~~~~~vdgiIi~~~~~~~ 72 (288)
T 1gud_A 3 EYAVVLKTLSNPFWVDMKKGIEDEAKTL--------GVSVD--IFASPSEGDFQSQLQLFEDLSNKNYKGIAFAPLSSVN 72 (288)
T ss_dssp EEEEEESCSSSHHHHHHHHHHHHHHHHH--------TCCEE--EEECSSTTCHHHHHHHHHHHHTSSEEEEEECCSSSST
T ss_pred EEEEEeCCCCchHHHHHHHHHHHHHHHc--------CCEEE--EeCCCCCCCHHHHHHHHHHHHHcCCCEEEEeCCChHH
Confidence 689998853 333334455555555544 34343 345 566766655566677777898876 3433322
Q ss_pred -HHHHHHhhccCCccEEEcccCCCCCCCC--CCCceEEecCCchHHHHHHHHHHHhc-C--CcEEEEEEEcCc--cccch
Q 002309 109 -AHIVSYVSNELQVPLLSFGVTDPTLSSL--QYPFFVRTTQSDSYQMTAVAEMVSYY-G--WNAVSVIFVDNE--YGRNG 180 (938)
Q Consensus 109 -~~~va~~~~~~~iP~Is~~~~~~~l~~~--~~p~~~r~~ps~~~~~~ai~~~l~~~-~--w~~vaii~~d~~--~g~~~ 180 (938)
...+ ..+...++|+|......+..... .-+..-.+..++...+...+++|... | -++|++|..... .....
T Consensus 73 ~~~~~-~~~~~~~iPvV~~~~~~~~~~~~~~~~~~~~~V~~D~~~~g~~a~~~L~~~~G~~~~~I~~i~g~~~~~~~~~R 151 (288)
T 1gud_A 73 LVMPV-ARAWKKGIYLVNLDEKIDMDNLKKAGGNVEAFVTTDNVAVGAKGASFIIDKLGAEGGEVAIIEGKAGNASGEAR 151 (288)
T ss_dssp THHHH-HHHHHTTCEEEEESSCCCHHHHHHTTCCCSEEEECCHHHHHHHHHHHHHHHHGGGCEEEEEEECSTTCHHHHHH
T ss_pred HHHHH-HHHHHCCCeEEEECCCCCcccccccCCceeEEECCChHHHHHHHHHHHHHHhCCCCCEEEEEeCCCCCchHhHH
Confidence 2233 33455799999864322110000 00110346677777788888887766 8 899999985432 23455
Q ss_pred HHHHHHHHhhc-ceEEEEEeecCCCCCCChhhHHHHHHHHhc--CCceEEEEEeChhhHHHHHHHHHHcCCCCCCeEEEE
Q 002309 181 VSALNDKLAER-RCRISYKSGIPPESGVNTGYVMDLLVKVAL--MESRVIVLHVSPSLGFQVFSVAKYLGMMGNGYVWIA 257 (938)
Q Consensus 181 ~~~l~~~l~~~-g~~v~~~~~~~~~~~~~~~d~~~~l~~lk~--~~~~viv~~~~~~~~~~~l~~a~~~g~~~~~~~wi~ 257 (938)
.+.+.+++++. |+.+..... .. .+.+.-...++++-+ ..++.|+ +.+...+..+++++++.|+. .+...++
T Consensus 152 ~~Gf~~al~~~~g~~~~~~~~--~~--~~~~~~~~~~~~ll~~~~~~~ai~-~~nD~~A~g~~~al~~~G~~-~dv~vvG 225 (288)
T 1gud_A 152 RNGATEAFKKASQIKLVASQP--AD--WDRIKALDVATNVLQRNPNIKAIY-CANDTMAMGVAQAVANAGKT-GKVLVVG 225 (288)
T ss_dssp HHHHHHHHHTCTTEEEEEEEE--CT--TCHHHHHHHHHHHHHHCTTCCEEE-ESSHHHHHHHHHHHHHTTCT-TTSEEEE
T ss_pred HHHHHHHHHhCCCcEEEEeec--CC--ccHHHHHHHHHHHHHhCCCceEEE-ECCCchHHHHHHHHHhcCCC-CCeEEEE
Confidence 77889999988 887654221 11 123333344444433 2456544 44556778899999999984 3444444
Q ss_pred e
Q 002309 258 T 258 (938)
Q Consensus 258 ~ 258 (938)
-
T Consensus 226 f 226 (288)
T 1gud_A 226 T 226 (288)
T ss_dssp E
T ss_pred e
Confidence 3
No 143
>3huu_A Transcription regulator like protein; PSI-II, NYSGXRC, LAC I, STR genomics, protein structure initiative; 1.95A {Staphylococcus haemolyticus}
Probab=97.17 E-value=0.005 Score=65.15 Aligned_cols=200 Identities=11% Similarity=0.070 Sum_probs=122.8
Q ss_pred eeEEEEEEeeC------CCcchhHHHHHHHHHHHHHhcCCCCCCCCEEEEEEccCCCChHHHHHHHHHHHhcCcEEEEc-
Q 002309 30 AVVNVGALFTL------DSTIGRVAKIAIEEAVKDVNSNSSILHGTKLNITMQSSNCSGFIGMVEALRFMETDIVAIIG- 102 (938)
Q Consensus 30 ~~i~IG~i~~~------~~~~g~~~~~a~~~Av~~iN~~~~il~g~~l~~~~~D~~~~~~~a~~~a~~li~~~V~aviG- 102 (938)
..-+||+++|. +..+-.....+++-+.++. |+++ .+.++..++....+....+..++|.+||-
T Consensus 21 ~~~~Igvi~~~~~~~~~~~~~~~~~~~gi~~~a~~~--------g~~~--~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~ 90 (305)
T 3huu_A 21 KTLTIGLIQKSSAPEIRQNPFNSDVLNGINQACNVR--------GYST--RMTVSENSGDLYHEVKTMIQSKSVDGFILL 90 (305)
T ss_dssp CCCEEEEECSCCSHHHHTSHHHHHHHHHHHHHHHHH--------TCEE--EECCCSSHHHHHHHHHHHHHTTCCSEEEES
T ss_pred CCCEEEEEeCCCccccccCcHHHHHHHHHHHHHHHC--------CCEE--EEEeCCCChHHHHHHHHHHHhCCCCEEEEe
Confidence 45789999997 2333334455665555543 3444 44566656555555555666678887763
Q ss_pred CCChhHHHHHHHhhccCCccEEEcccCCCCCCCCCCCceEEecCCchHHHHHHHHHHHhcCCcEEEEEEEcCc--cccch
Q 002309 103 PQCSTVAHIVSYVSNELQVPLLSFGVTDPTLSSLQYPFFVRTTQSDSYQMTAVAEMVSYYGWNAVSVIFVDNE--YGRNG 180 (938)
Q Consensus 103 p~~s~~~~~va~~~~~~~iP~Is~~~~~~~l~~~~~p~~~r~~ps~~~~~~ai~~~l~~~~w~~vaii~~d~~--~g~~~ 180 (938)
|..... .....+...++|+|...... .. +.+-.+..++...+...++++...|.++|++|..+.. .....
T Consensus 91 ~~~~~~--~~~~~l~~~~iPvV~i~~~~---~~---~~~~~V~~D~~~~g~~a~~~L~~~G~~~I~~i~~~~~~~~~~~R 162 (305)
T 3huu_A 91 YSLKDD--PIEHLLNEFKVPYLIVGKSL---NY---ENIIHIDNDNIDAAYQLTQYLYHLGHRHILFLQESGHYAVTEDR 162 (305)
T ss_dssp SCBTTC--HHHHHHHHTTCCEEEESCCC---SS---TTCCEEECCHHHHHHHHHHHHHHTTCCSEEEEEESSCBHHHHHH
T ss_pred CCcCCc--HHHHHHHHcCCCEEEECCCC---cc---cCCcEEEeCHHHHHHHHHHHHHHCCCCeEEEEcCCcccchhHHH
Confidence 333222 33445667799999864432 11 2234567788888899999998889999999986543 34456
Q ss_pred HHHHHHHHhhcceEEEEEeecCCCCCCChhhHHHHHHHH-hc--CCceEEEEEeChhhHHHHHHHHHHcCCCCCCeE
Q 002309 181 VSALNDKLAERRCRISYKSGIPPESGVNTGYVMDLLVKV-AL--MESRVIVLHVSPSLGFQVFSVAKYLGMMGNGYV 254 (938)
Q Consensus 181 ~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~l-k~--~~~~viv~~~~~~~~~~~l~~a~~~g~~~~~~~ 254 (938)
.+.+.+++++.|+.+.. . +... ... ....+.++ -+ .++++|+ +.+...+..+++++++.|+..++-+
T Consensus 163 ~~Gf~~~l~~~g~~~~~-~-~~~~---~~~-~~~~~~~~~l~~~~~~~ai~-~~nd~~A~g~~~al~~~g~~vP~di 232 (305)
T 3huu_A 163 SVGFKQYCDDVKISNDC-V-VIKS---MND-LRDFIKQYCIDASHMPSVII-TSDVMLNMQLLNVLYEYQLRIPEDI 232 (305)
T ss_dssp HHHHHHHHHHTTCCCCE-E-EECS---HHH-HHHHC--------CCCSEEE-ESSHHHHHHHHHHHHHTTCCTTTTC
T ss_pred HHHHHHHHHHcCCCccc-E-EecC---cHH-HHHHHHHhhhcCCCCCCEEE-ECChHHHHHHHHHHHHcCCCCCcce
Confidence 78899999999976543 1 1111 111 33344444 22 3566655 4566677889999999998755433
No 144
>4fe7_A Xylose operon regulatory protein; HTH_ARAC, helix-turn-helix, PBP, periplasmic binding protein binding transcription regulator, DNA xylose; HET: XYS; 2.90A {Escherichia coli} PDB: 4fe4_A
Probab=97.16 E-value=0.012 Score=65.22 Aligned_cols=209 Identities=11% Similarity=0.064 Sum_probs=123.6
Q ss_pred CCeeEEEEEEeeCCCcchhHHHHHHHHHHHHHhcCCCCCCCCEEEEEEccCCCChHHHHHHHHHHHhcCcEEEEcCCChh
Q 002309 28 RPAVVNVGALFTLDSTIGRVAKIAIEEAVKDVNSNSSILHGTKLNITMQSSNCSGFIGMVEALRFMETDIVAIIGPQCST 107 (938)
Q Consensus 28 ~~~~i~IG~i~~~~~~~g~~~~~a~~~Av~~iN~~~~il~g~~l~~~~~D~~~~~~~a~~~a~~li~~~V~aviGp~~s~ 107 (938)
...+-+||+++|.+.++-.....+++-+.++. |+.+.+...++.. .....+..++|.+||-...
T Consensus 22 ~~~s~~Igvv~~~~~~f~~~l~~gi~~~a~~~--------g~~~~i~~~~~~~------~~i~~l~~~~vDGiIi~~~-- 85 (412)
T 4fe7_A 22 FTKRHRITLLFNANKAYDRQVVEGVGEYLQAS--------QSEWDIFIEEDFR------ARIDKIKDWLGDGVIADFD-- 85 (412)
T ss_dssp CCCCEEEEEECCTTSHHHHHHHHHHHHHHHHH--------TCCEEEEECC-CC--------------CCCSEEEEETT--
T ss_pred CCCCceEEEEeCCcchhhHHHHHHHHHHHHhc--------CCCeEEEecCCcc------chhhhHhcCCCCEEEEecC--
Confidence 44578999999976665556667777666655 3444444433221 1233455667887775222
Q ss_pred HHHHHHHhhccCCccEEEcccCCCCCCCCCCCceEEecCCchHHHHHHHHHHHhcCCcEEEEEEEcCcc----ccchHHH
Q 002309 108 VAHIVSYVSNELQVPLLSFGVTDPTLSSLQYPFFVRTTQSDSYQMTAVAEMVSYYGWNAVSVIFVDNEY----GRNGVSA 183 (938)
Q Consensus 108 ~~~~va~~~~~~~iP~Is~~~~~~~l~~~~~p~~~r~~ps~~~~~~ai~~~l~~~~w~~vaii~~d~~~----g~~~~~~ 183 (938)
...+...+...++|+|......+... ..+.+-.+..++...+..+++.+...|.+++++|...... .....+.
T Consensus 86 -~~~~~~~l~~~~iPvV~i~~~~~~~~--~~~~~~~V~~D~~~~g~~a~~~L~~~G~r~I~~i~~~~~~~~~~~~~R~~G 162 (412)
T 4fe7_A 86 -DKQIEQALADVDVPIVGVGGSYHLAE--SYPPVHYIATDNYALVESAFLHLKEKGVNRFAFYGLPESSGKRWATEREYA 162 (412)
T ss_dssp -CHHHHHHHTTCCSCEEEEEECCSSGG--GSCSSEEEEECHHHHHHHHHHHHHHTTCCEEEEECCCTTSCCHHHHHHHHH
T ss_pred -ChHHHHHHhhCCCCEEEecCCccccc--cCCCCCEEEeCHHHHHHHHHHHHHHcCCceEEEecccccccccHHHHHHHH
Confidence 23345566778999998754432211 1233456777888889999999988999999999855432 4567788
Q ss_pred HHHHHhhcceEEEEEeecCCCCCCChhhHHHHHHHHh-c-CCceEEEEEeChhhHHHHHHHHHHcCCCCCCeEEEE
Q 002309 184 LNDKLAERRCRISYKSGIPPESGVNTGYVMDLLVKVA-L-MESRVIVLHVSPSLGFQVFSVAKYLGMMGNGYVWIA 257 (938)
Q Consensus 184 l~~~l~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~lk-~-~~~~viv~~~~~~~~~~~l~~a~~~g~~~~~~~wi~ 257 (938)
+.+++++.|+........... ..+..+....+.++- . .++++|+ +++...+..+++++++.|+..++-+-++
T Consensus 163 f~~al~~~g~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~aI~-~~nD~~A~g~~~al~~~G~~vP~disvi 236 (412)
T 4fe7_A 163 FRQLVAEEKYRGVVYQGLETA-PENWQHAQNRLADWLQTLPPQTGII-AVTDARARHILQVCEHLHIPVPEKLCVI 236 (412)
T ss_dssp HHHHHTTSSSCCEEECCSCSS-CSSHHHHHHHHHHHHHHSCTTEEEE-ESSHHHHHHHHHHHHHHTCCTTTTSEEE
T ss_pred HHHHHHHcCCCcccccccccc-ccchhhHHHHHHHHHHhCCCCeEEE-EEecHHHHHHHHHHHHcCCCCCceEEEE
Confidence 999999998764322111111 011223333344332 2 3456654 4556677889999999998665434333
No 145
>3h5o_A Transcriptional regulator GNTR; transcription regulator, GNTR,chromobacterium violaceum, PSI, SGX, DNA-binding; 2.30A {Chromobacterium violaceum}
Probab=97.15 E-value=0.0096 Score=64.05 Aligned_cols=206 Identities=11% Similarity=0.035 Sum_probs=126.9
Q ss_pred eeEEEEEEeeCC-CcchhHHHHHHHHHHHHHhcCCCCCCCCEEEEEEccCCCChHHHHHHHHHHHhcCcEEEEc-CCChh
Q 002309 30 AVVNVGALFTLD-STIGRVAKIAIEEAVKDVNSNSSILHGTKLNITMQSSNCSGFIGMVEALRFMETDIVAIIG-PQCST 107 (938)
Q Consensus 30 ~~i~IG~i~~~~-~~~g~~~~~a~~~Av~~iN~~~~il~g~~l~~~~~D~~~~~~~a~~~a~~li~~~V~aviG-p~~s~ 107 (938)
..-+||++.|.. .++-.....+++-+.++. |+.+ .+.++..++..-.+....++.++|.+||- |....
T Consensus 61 ~~~~Igvi~~~~~~~~~~~~~~gi~~~a~~~--------g~~~--~~~~~~~~~~~~~~~~~~l~~~~vdGiIi~~~~~~ 130 (339)
T 3h5o_A 61 KSRTVLVLIPSLANTVFLETLTGIETVLDAA--------GYQM--LIGNSHYDAGQELQLLRAYLQHRPDGVLITGLSHA 130 (339)
T ss_dssp --CEEEEEESCSTTCTTHHHHHHHHHHHHHT--------TCEE--EEEECTTCHHHHHHHHHHHHTTCCSEEEEECSCCC
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHHHHHHHHC--------CCEE--EEEeCCCChHHHHHHHHHHHcCCCCEEEEeCCCCC
Confidence 356899999864 333345566666655542 4554 44666777777666777777778877652 22222
Q ss_pred HHHHHHHhhccCCccEEEcccCCCCCCCCCCCceEEecCCchHHHHHHHHHHHhcCCcEEEEEEEcC-ccccchHHHHHH
Q 002309 108 VAHIVSYVSNELQVPLLSFGVTDPTLSSLQYPFFVRTTQSDSYQMTAVAEMVSYYGWNAVSVIFVDN-EYGRNGVSALND 186 (938)
Q Consensus 108 ~~~~va~~~~~~~iP~Is~~~~~~~l~~~~~p~~~r~~ps~~~~~~ai~~~l~~~~w~~vaii~~d~-~~g~~~~~~l~~ 186 (938)
. .....+...++|+|...... .. +.. .+..++...+..+++.+...|.+++++|.... .......+.+.+
T Consensus 131 ~--~~~~~l~~~~iPvV~~~~~~----~~--~~~-~V~~D~~~~~~~a~~~L~~~G~~~I~~i~~~~~~~~~~R~~Gf~~ 201 (339)
T 3h5o_A 131 E--PFERILSQHALPVVYMMDLA----DD--GRC-CVGFSQEDAGAAITRHLLSRGKRRIGFLGAQLDERVMKRLDGYRA 201 (339)
T ss_dssp T--THHHHHHHTTCCEEEEESCC----SS--SCC-EEECCHHHHHHHHHHHHHHTTCCSEEEEEESCCHHHHHHHHHHHH
T ss_pred H--HHHHHHhcCCCCEEEEeecC----CC--CCe-EEEECHHHHHHHHHHHHHHCCCCeEEEEeCCCCccHHHHHHHHHH
Confidence 1 33445667799999864321 11 222 56778888889999998888999999998653 334456778899
Q ss_pred HHhhcceEEEE-EeecCCCCCCChhhHHHHHHHHhc--CCceEEEEEeChhhHHHHHHHHHHcCCCCCCeEEEE
Q 002309 187 KLAERRCRISY-KSGIPPESGVNTGYVMDLLVKVAL--MESRVIVLHVSPSLGFQVFSVAKYLGMMGNGYVWIA 257 (938)
Q Consensus 187 ~l~~~g~~v~~-~~~~~~~~~~~~~d~~~~l~~lk~--~~~~viv~~~~~~~~~~~l~~a~~~g~~~~~~~wi~ 257 (938)
++++.|+.... ....... .+...-...+.++-+ ..+++|+ +++...+..+++++++.|+..++-+-+.
T Consensus 202 al~~~g~~~~~~~~~~~~~--~~~~~~~~~~~~ll~~~~~~~ai~-~~nD~~A~g~~~al~~~G~~vP~disvv 272 (339)
T 3h5o_A 202 ALDAADCRDAGLEWLDPQP--SSMQMGADMLDRALAERPDCDALF-CCNDDLAIGALARSQQLGIAVPERLAIA 272 (339)
T ss_dssp HHHHTTCCCGGGEEEECSC--CCHHHHHHHHHHHHHHCTTCCEEE-ESSHHHHHHHHHHHHHTTCCTTTTCEEE
T ss_pred HHHHCCCCCCChheEecCC--CCHHHHHHHHHHHHcCCCCCcEEE-ECChHHHHHHHHHHHHcCCCCCCCEEEE
Confidence 99998872110 0011111 223333444444433 3566665 4556678889999999998765544443
No 146
>2fqx_A Membrane lipoprotein TMPC; ABC transport system, ligand-binding protein, guanosine, TP0319, transport protein; HET: GMP; 1.70A {Treponema pallidum} PDB: 2fqw_A* 2fqy_A*
Probab=97.12 E-value=0.023 Score=60.35 Aligned_cols=207 Identities=12% Similarity=0.025 Sum_probs=112.3
Q ss_pred eeEEEEEEee---CCC-cchhHHHHHHHHHHHHHhcCCCCCCCCEEEEEEccCCCChHHHHHHHHHHHhcCcEEEEcCCC
Q 002309 30 AVVNVGALFT---LDS-TIGRVAKIAIEEAVKDVNSNSSILHGTKLNITMQSSNCSGFIGMVEALRFMETDIVAIIGPQC 105 (938)
Q Consensus 30 ~~i~IG~i~~---~~~-~~g~~~~~a~~~Av~~iN~~~~il~g~~l~~~~~D~~~~~~~a~~~a~~li~~~V~aviGp~~ 105 (938)
++.+||+++| .+. ++-.....|++.+.++. |+++.+. ++..+. ...+....++++++.+||....
T Consensus 3 ~~~~Ig~v~~~g~~~d~~f~~~~~~Gi~~~~~~~--------g~~~~~~--~~~~~~-~~~~~l~~l~~~~~dgIi~~~~ 71 (318)
T 2fqx_A 3 GDFVVGMVTDSGDIDDKSFNQQVWEGISRFAQEN--------NAKCKYV--TASTDA-EYVPSLSAFADENMGLVVACGS 71 (318)
T ss_dssp CCCEEEEEESSSCTTSSSHHHHHHHHHHHHHHHT--------TCEEEEE--ECCSGG-GHHHHHHHHHHTTCSEEEEEST
T ss_pred CCcEEEEEEcCCCCCCccHHHHHHHHHHHHHHHh--------CCeEEEE--eCCCHH-HHHHHHHHHHHcCCCEEEECCh
Confidence 3578999997 223 33334445555544442 4554443 332222 2234556677778888876332
Q ss_pred hhHHHHHHHhhcc-CCccEEEcccCCCCCCCCCCCceEEecCCchHHHHHH----HHHHHhcCC-cEEEEEEEc-Ccccc
Q 002309 106 STVAHIVSYVSNE-LQVPLLSFGVTDPTLSSLQYPFFVRTTQSDSYQMTAV----AEMVSYYGW-NAVSVIFVD-NEYGR 178 (938)
Q Consensus 106 s~~~~~va~~~~~-~~iP~Is~~~~~~~l~~~~~p~~~r~~ps~~~~~~ai----~~~l~~~~w-~~vaii~~d-~~~g~ 178 (938)
.. ..++..++.. .++|++......+ . .+.+-....+ ..++..+ +..+...|. ++|++|... .....
T Consensus 72 ~~-~~~~~~~a~~~p~~p~v~id~~~~---~--~~~~~~v~~d-~~~~~~lag~~a~~l~~~Gh~r~Ig~i~g~~~~~~~ 144 (318)
T 2fqx_A 72 FL-VEAVIETSARFPKQKFLVIDAVVQ---D--RDNVVSAVFG-QNEGSFLVGVAAALKAKEAGKSAVGFIVGMELGMMP 144 (318)
T ss_dssp TT-HHHHHHHHHHCTTSCEEEESSCCC---S--CTTEEEEEEC-HHHHHHHHHHHHHHHHHHTTCCEEEEEESCCSTTTH
T ss_pred hH-HHHHHHHHHHCCCCEEEEEcCccC---C--CCCEEEEEec-hHHHHHHHHHHHHHHhccCCCcEEEEEeCcccHHHH
Confidence 21 1224445544 3899987643221 0 1333333333 3344333 456666676 899999743 23344
Q ss_pred chHHHHHHHHhhcceEEEEEeecCCCCCCChhhHHHHHHHHhcCCceEEEEEeChhhHHHHHHHHHHcCCCCCCeEEEE
Q 002309 179 NGVSALNDKLAERRCRISYKSGIPPESGVNTGYVMDLLVKVALMESRVIVLHVSPSLGFQVFSVAKYLGMMGNGYVWIA 257 (938)
Q Consensus 179 ~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~lk~~~~~viv~~~~~~~~~~~l~~a~~~g~~~~~~~wi~ 257 (938)
.....+.+.+++.|..+.....+... -.+...-....+++-+.++++|+. .....+..+++++++.|+. +.-++++
T Consensus 145 ~r~~Gf~~~~~~~~~~~~~~~~~~~~-~~~~~~g~~~a~~ll~~~~daI~~-~~d~~a~Gv~~a~~e~g~~-P~dv~vi 220 (318)
T 2fqx_A 145 LFEAGFEAGVKAVDPDIQVVVEVANT-FSDPQKGQALAAKLYDSGVNVIFQ-VAGGTGNGVIKEARDRRLN-GQDVWVI 220 (318)
T ss_dssp HHHHHHHHHHHHHCTTCEEEEEECSC-SSCHHHHHHHHHHHHHTTCCEEEE-ECGGGHHHHHHHHHHHHHT-TCCCEEE
T ss_pred HHHHHHHHHHHHHCCCCEEEEEEccC-ccCHHHHHHHHHHHHHCCCcEEEE-CCCCCchHHHHHHHhhhhc-cCCcEEE
Confidence 56778889998877543322222211 011233334455555567887654 4556677888999998876 4445554
No 147
>3ix1_A N-formyl-4-amino-5-aminomethyl-2-methylpyrimidine protein; periplasmic N-formyl-4-amino-5-aminomethyl-2-methylpyrimidin protein; HET: NFM; 2.40A {Bacillus halodurans c-125}
Probab=97.09 E-value=0.0019 Score=68.42 Aligned_cols=77 Identities=6% Similarity=-0.016 Sum_probs=52.2
Q ss_pred CcceEeeeHHHHHHHHHhCCCCccEEEEecCCCCCCCChhHHHHhhhcceecEEecc-Eeeec---Cceeeeeeccceec
Q 002309 487 SDMFQGFCIDVFTAAVNLLPYAVPYQFVAFGDGHKNPSYTQLVDSITTGVFDAVVGD-ITIVT---NRTKIVDFSQPYAA 562 (938)
Q Consensus 487 ~~~~~G~~~dll~~la~~l~f~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~D~~~~~-~~~t~---~r~~~v~fs~p~~~ 562 (938)
+..+.|+.+.+-+-+.++.|++ +++++. +....++..|..|++|+++++ ..... +....+.+..++..
T Consensus 14 ~~~~~~~~va~~~g~~~~~Gl~--v~~~~~------~~~~~~~~~l~~G~~D~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 85 (302)
T 3ix1_A 14 NAVHTFLYVAIENGYFAEEGLD--VDIVFP------TNPTDPIQLTASGAIPLALSYQPDVILARSKDLPVVSVASVVRS 85 (302)
T ss_dssp CGGGHHHHHHHHTTHHHHTTEE--EEEECC------SSTTHHHHHHHHTSCSEEEECHHHHHHHHHTTCCEEEEEEEECS
T ss_pred CcccHHHHHHHHcChHHHcCCc--EEEecC------CCCchHHHHHHCCCCCEEecCHHHHHHHHHCCCCEEEEEEEecc
Confidence 3456678888888888889955 555553 334589999999999999875 22222 33345666666666
Q ss_pred ccEEEEEec
Q 002309 563 SGLVVVVPF 571 (938)
Q Consensus 563 ~~~~~lv~~ 571 (938)
.+..+++++
T Consensus 86 ~~~~l~~~~ 94 (302)
T 3ix1_A 86 PLNHVMFLA 94 (302)
T ss_dssp CCEEEEEEG
T ss_pred CCEEEEEEC
Confidence 667777764
No 148
>3qsl_A Putative exported protein; unknown, structural genomics, PSI-biology, midwest center FO structural genomics, MCSG, unknown function; HET: MSE CIT; 2.00A {Bordetella bronchiseptica}
Probab=97.09 E-value=0.0034 Score=67.76 Aligned_cols=72 Identities=18% Similarity=0.328 Sum_probs=50.6
Q ss_pred CCCCChHHhhhCCCCeeEE-eCchHHHHHH---Hhccccc--ccccccCCHHHHHHHHhcCCCCCceEEEEecchhHHHH
Q 002309 688 SPINGIESLRKSDDPIGYQ-EGSFAEYYLS---QELNISK--SRLVALRTPEDYAKALKDGPGKGGVAAVVDERPYVELF 761 (938)
Q Consensus 688 ~~i~s~~dL~~~~~~i~~~-~~s~~~~~~~---~~~~~~~--~~~~~~~~~~~~~~~l~~~~~~g~~~a~i~~~~~~~~~ 761 (938)
++|++++||. |++|++. .|+....++. +..+... .+++.+....+...+|.+ |++|+++...++....
T Consensus 128 ~~i~s~~DL~--Gk~i~~~~~gs~~~~~~~~~l~~~G~~~~~v~~~~~~~~~~~~~al~~----G~vDa~~~~~p~~~~~ 201 (346)
T 3qsl_A 128 PGYKGPADLK--GRKIGVTAPGSSTNMVVNFFLAKHGLKASDVSFIGVGAGAGAVTALRS----GQIDAISNTDPVVSML 201 (346)
T ss_dssp TTCCSGGGGT--TCEEEESSTTSHHHHHHHHHHHHTTCCGGGSEEEECCSSHHHHHHHHH----TSCSEEEEETTHHHHH
T ss_pred cCCCChHHcC--CCEEEECCCCcHHHHHHHHHHHHcCCCHHHeEEEecCCcHHHHHHHHc----CCccEEEecchhHHHH
Confidence 3799999998 8899998 5664433332 2344332 344566677889999999 8999999888877665
Q ss_pred HhcC
Q 002309 762 LSSQ 765 (938)
Q Consensus 762 ~~~~ 765 (938)
..+.
T Consensus 202 ~~~g 205 (346)
T 3qsl_A 202 ETSG 205 (346)
T ss_dssp HHTT
T ss_pred HhCC
Confidence 5443
No 149
>2k1e_A Water soluble analogue of potassium channel, KCSA; homotetramer, ION transport, ionic channel, membrane, transmembrane, transport; NMR {Escherichia coli} PDB: 2kb1_A
Probab=97.09 E-value=0.00047 Score=59.39 Aligned_cols=78 Identities=15% Similarity=0.092 Sum_probs=64.0
Q ss_pred HHHHhhhheeecccCCCCCCCccccchhhhhHHHHHHHhhhhhhhhhhcccCccccchhHHHHHHHHHHHHHHhhhhhhh
Q 002309 598 VVVGIVVWILEHRINDEFRGPPKRQVITILWFSLSTLFFAHIAIFVILAEENTVSTLGRLVLIIWLFVVLIINSSYTASL 677 (938)
Q Consensus 598 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~p~s~s~R~~~~~w~~~~lil~s~Yta~L 677 (938)
++.+.+++.+|+..+ ++...++.+++||++.++..-| +++..|.+..+|++.++|.++++.+.+...+.+
T Consensus 20 ~~~a~~~~~~E~~~~----~~~~~~~~~a~y~~~~T~tTvG------yGDi~P~t~~gr~~~~~~~l~G~~~~~~~~~~i 89 (103)
T 2k1e_A 20 EEASKKAVEAERGAP----GAALISYPDAIWWSVETATTVG------YGDRYPVTEEGRKVAEQVMKAGIEVFALVTAAL 89 (103)
T ss_dssp HHHHHHHHHHHTTST----TCCCCCGGGTTTTTTGGGGCCS------CCSSCCCSSSCTHHHHHHHHHHHHHHHHTHHHH
T ss_pred HHHHHhhhhhccCCC----CcccccHHHHHHHHHHHHhccc------CCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344566777776543 2334578999999999998887 668889999999999999999999999999999
Q ss_pred hhhhhccc
Q 002309 678 TSILTVQQ 685 (938)
Q Consensus 678 ~s~Lt~~~ 685 (938)
++.++...
T Consensus 90 ~~~~~~~~ 97 (103)
T 2k1e_A 90 ATDFVRRE 97 (103)
T ss_dssp HTTGGGHH
T ss_pred HHHHHHHH
Confidence 99987654
No 150
>3jvd_A Transcriptional regulators; structural genomics, PSI-2, sugar binding protein, transcrip regulation, protein structure initiative; 2.30A {Corynebacterium glutamicum}
Probab=97.08 E-value=0.019 Score=61.56 Aligned_cols=197 Identities=12% Similarity=0.055 Sum_probs=123.5
Q ss_pred eeEEEEEEeeCC-CcchhHHHHHHHHHHHHHhcCCCCCCCCEEEEEEccCCCChHHHHHHHHHHHhcCcEEEEcCCChhH
Q 002309 30 AVVNVGALFTLD-STIGRVAKIAIEEAVKDVNSNSSILHGTKLNITMQSSNCSGFIGMVEALRFMETDIVAIIGPQCSTV 108 (938)
Q Consensus 30 ~~i~IG~i~~~~-~~~g~~~~~a~~~Av~~iN~~~~il~g~~l~~~~~D~~~~~~~a~~~a~~li~~~V~aviGp~~s~~ 108 (938)
..-+||++.|.. .++-.....+++-+.++. |+.+.+ .++.. +.........++.++|.+||-...
T Consensus 63 ~~~~Igvi~~~~~~~~~~~~~~gi~~~a~~~--------g~~~~~--~~~~~-~~~~~~~~~~l~~~~vdGiIi~~~--- 128 (333)
T 3jvd_A 63 RSALVGVIVPDLSNEYYSESLQTIQQDLKAA--------GYQMLV--AEANS-VQAQDVVMESLISIQAAGIIHVPV--- 128 (333)
T ss_dssp -CCEEEEEESCSSSHHHHHHHHHHHHHHHHH--------TCEEEE--EECCS-HHHHHHHHHHHHHHTCSEEEECCC---
T ss_pred CCCEEEEEeCCCcChHHHHHHHHHHHHHHHC--------CCEEEE--ECCCC-hHHHHHHHHHHHhCCCCEEEEcch---
Confidence 356799999864 333345566666666553 455554 44444 555555556666778888775333
Q ss_pred HHHHHHhhccCCccEEEcccCCCCCCCCCCCceEEecCCchHHHHHHHHHHHhcCCcEEEEEEEcCc--cccchHHHHHH
Q 002309 109 AHIVSYVSNELQVPLLSFGVTDPTLSSLQYPFFVRTTQSDSYQMTAVAEMVSYYGWNAVSVIFVDNE--YGRNGVSALND 186 (938)
Q Consensus 109 ~~~va~~~~~~~iP~Is~~~~~~~l~~~~~p~~~r~~ps~~~~~~ai~~~l~~~~w~~vaii~~d~~--~g~~~~~~l~~ 186 (938)
...+...++|+|......+. +.+-.+..++...+...++++...|.++|++|..... ......+.+.+
T Consensus 129 ----~~~~~~~~iPvV~~~~~~~~------~~~~~V~~D~~~~~~~a~~~L~~~G~~~I~~i~~~~~~~~~~~R~~Gf~~ 198 (333)
T 3jvd_A 129 ----VGSIAPEGIPMVQLTRGELG------PGFPRVLCDDEAGFFQLTESVLGGSGMNIAALVGEESLSTTQERMRGISH 198 (333)
T ss_dssp ----TTCCC-CCSCEEEECC----------CCSCEEEECHHHHHHHHHHHHCCSSSCEEEEEESCTTSHHHHHHHHHHHH
T ss_pred ----HHHHhhCCCCEEEECccCCC------CCCCEEEEChHHHHHHHHHHHHHCCCCeEEEEeCCCCCccHHHHHHHHHH
Confidence 34566779999987543321 2233456778888899999998899999999985432 34566788999
Q ss_pred HHhhcceEEEEEeecCCCCCCChhhHHHHHHHHhcCC-ceEEEEEeChhhHHHHHHHHHHcCCCCCCeEEE
Q 002309 187 KLAERRCRISYKSGIPPESGVNTGYVMDLLVKVALME-SRVIVLHVSPSLGFQVFSVAKYLGMMGNGYVWI 256 (938)
Q Consensus 187 ~l~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~lk~~~-~~viv~~~~~~~~~~~l~~a~~~g~~~~~~~wi 256 (938)
++++.|+.... .... .+.++....+.++-+.. ++.|+ +++...+..+++++++.|+..++-+-+
T Consensus 199 al~~~g~~~~~--~~~~---~~~~~~~~~~~~ll~~~~~~ai~-~~nd~~A~g~~~al~~~G~~vP~disv 263 (333)
T 3jvd_A 199 AASIYGAEVTF--HFGH---YSVESGEEMAQVVFNNGLPDALI-VASPRLMAGVMRAFTRLNVRVPHDVVI 263 (333)
T ss_dssp HHHHTTCEEEE--EECC---SSHHHHHHHHHHHHHTCCCSEEE-ECCHHHHHHHHHHHHHTTCCTTTTCEE
T ss_pred HHHHCCCCEEE--ecCC---CCHHHHHHHHHHHhcCCCCcEEE-ECCHHHHHHHHHHHHHcCCCCCCceEE
Confidence 99999987221 1111 12444444555554333 66655 455667778999999999876543333
No 151
>3s99_A Basic membrane lipoprotein; ssgcid, structural genomics, SEA structural genomics center for infectious disease, adenine; HET: ADE; 2.05A {Brucella melitensis biovar abortus}
Probab=97.01 E-value=0.042 Score=59.00 Aligned_cols=202 Identities=12% Similarity=-0.002 Sum_probs=116.9
Q ss_pred CCCeeEEEEEEeeCC---CcchhHHHHHHHHHHHHHhcCCCCCCCCEEEEEEccCCCChHHHHHHHHHHHhcCcEEEEcC
Q 002309 27 ARPAVVNVGALFTLD---STIGRVAKIAIEEAVKDVNSNSSILHGTKLNITMQSSNCSGFIGMVEALRFMETDIVAIIGP 103 (938)
Q Consensus 27 ~~~~~i~IG~i~~~~---~~~g~~~~~a~~~Av~~iN~~~~il~g~~l~~~~~D~~~~~~~a~~~a~~li~~~V~aviGp 103 (938)
...++++||++++-. ..+-.....|++.+.++.+ -++++.+.++..+.....+...+++++++.+||+.
T Consensus 22 ~~~~~~kIglv~~g~i~D~~f~~~~~~G~~~~~~~~G--------~~~~~~~~e~~~~~~d~~~~l~~l~~~g~d~Ii~~ 93 (356)
T 3s99_A 22 MAEEKLKVGFIYIGPPGDFGWTYQHDQARKELVEALG--------DKVETTFLENVAEGADAERSIKRIARAGNKLIFTT 93 (356)
T ss_dssp ----CEEEEEECSSCGGGSSHHHHHHHHHHHHHHHHT--------TTEEEEEECSCCTTHHHHHHHHHHHHTTCSEEEEC
T ss_pred ccCCCCEEEEEEccCCCchhHHHHHHHHHHHHHHHhC--------CceEEEEEecCCCHHHHHHHHHHHHHCCCCEEEEC
Confidence 456789999999742 2333445566666655552 12556666666555556677778888899999986
Q ss_pred CChhHHHHHHHhhccC-CccEEEcccCCCCCCCCCCCceEEecCCchHHHHHHHHHHHh--cCCcEEEEEEEcC-ccccc
Q 002309 104 QCSTVAHIVSYVSNEL-QVPLLSFGVTDPTLSSLQYPFFVRTTQSDSYQMTAVAEMVSY--YGWNAVSVIFVDN-EYGRN 179 (938)
Q Consensus 104 ~~s~~~~~va~~~~~~-~iP~Is~~~~~~~l~~~~~p~~~r~~ps~~~~~~ai~~~l~~--~~w~~vaii~~d~-~~g~~ 179 (938)
. .....++..++..+ ++|++...... . .|++...... ..++.-++-.+.. -+-++|++|.... .....
T Consensus 94 g-~~~~~~~~~vA~~~Pdv~fv~id~~~---~---~~Nv~sv~~~-~~eg~ylaG~~A~~~tk~~kIGfVgg~~~p~v~~ 165 (356)
T 3s99_A 94 S-FGYMDPTVKVAKKFPDVKFEHATGYK---T---ADNMSAYNAR-FYEGRYVQGVIAAKMSKKGIAGYIGSVPVPEVVQ 165 (356)
T ss_dssp S-GGGHHHHHHHHTTCTTSEEEEESCCC---C---BTTEEEEEEC-HHHHHHHHHHHHHHHCSSCEEEEEECCCCHHHHH
T ss_pred C-HHHHHHHHHHHHHCCCCEEEEEeccc---c---CCcEEEEEec-hhHHHHHHHHHHHHhcCCCEEEEECCCccHHHHH
Confidence 4 33455667777765 78888653321 1 1333333332 3445444443311 1247999998432 22334
Q ss_pred hHHHHHHHHhhcceEEEEEeecCCCCCCChhhHHHHHHHHhcCCceEEEEEeChhhHHHHHHHHHHcCC
Q 002309 180 GVSALNDKLAERRCRISYKSGIPPESGVNTGYVMDLLVKVALMESRVIVLHVSPSLGFQVFSVAKYLGM 248 (938)
Q Consensus 180 ~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~lk~~~~~viv~~~~~~~~~~~l~~a~~~g~ 248 (938)
....|.+.++..+..+.....+... -.+...-....+.+-+.++|+|+.+.... .++++|++.|.
T Consensus 166 ~~~GF~~G~k~~np~i~v~~~~~g~-~~d~~kg~~~a~~l~~~G~DvIf~~~d~~---Gv~~aa~e~Gv 230 (356)
T 3s99_A 166 GINSFMLGAQSVNPDFRVKVIWVNS-WFDPGKEADAAKALIDQGVDIITQHTDST---AAIQVAHDRGI 230 (356)
T ss_dssp HHHHHHHHHHTTCTTCEEEEEECSS-SCCHHHHHHHHHHHHHTTCSEEEESSSSS---HHHHHHHHTTC
T ss_pred HHHHHHHHHHHHCCCCEEEEEECCC-CCChHHHHHHHHHHHhCCCcEEEECCCch---HHHHHHHHcCC
Confidence 5677888888766443322222211 01233444555666667899888776653 57889998774
No 152
>2f5x_A BUGD; periplasmic binding protein, transport protein; 1.72A {Bordetella pertussis tohama I}
Probab=97.00 E-value=0.005 Score=64.93 Aligned_cols=121 Identities=13% Similarity=0.164 Sum_probs=79.7
Q ss_pred CCCCChHHhhh------CCCCeeEEe-CchHH---HHHHHhcccccccccccCCHHHHHHHHhcCCCCCceEEEEecchh
Q 002309 688 SPINGIESLRK------SDDPIGYQE-GSFAE---YYLSQELNISKSRLVALRTPEDYAKALKDGPGKGGVAAVVDERPY 757 (938)
Q Consensus 688 ~~i~s~~dL~~------~~~~i~~~~-~s~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~a~i~~~~~ 757 (938)
.+++|++||.+ ....+|... |+... ..+.+..+.. ...++|....+.+.+|.. |++|+.+.+...
T Consensus 121 s~~~sl~dL~~~ak~~p~~~~~g~~g~Gs~~hl~~~~l~~~~Gi~-~~~Vpy~G~~~a~~aL~~----G~VD~~~~~~~~ 195 (312)
T 2f5x_A 121 FPPNNIKELAEYVKKNADKISLANAGIGAASHLCGTMLVEALGVN-LLTIPYKGTAPAMNDLLG----KQVDLMCDQTTN 195 (312)
T ss_dssp CSCCSHHHHHHHHHHHGGGCEEEESSTTSHHHHHHHHHHHHHTCC-CEEEECSSHHHHHHHHHT----TSSCEEEEEHHH
T ss_pred CCCCCHHHHHHHHHhCCCceEEeCCCCCcHHHHHHHHHHHHHCCC-eEEeccCChHHHHHHHHc----CCccEEEechHH
Confidence 58999999974 223455542 44322 2333444443 234678888999999999 899999988766
Q ss_pred HHHHHhcCCcEEEe---C--------c--cc---------cccceEeeecCCCc--chhhHHHHHHhhhccCcHHHHHHh
Q 002309 758 VELFLSSQCSFRIV---G--------Q--EF---------TKSGWGFAFPRDSP--LAVDLSSAILELAENGDLQRIHDK 813 (938)
Q Consensus 758 ~~~~~~~~~~l~~~---~--------~--~~---------~~~~~~~~~~k~sp--l~~~i~~~il~l~e~G~~~~l~~~ 813 (938)
...+++. .++..+ . + .+ ....++++.|+|-| +...+++++.++.+++.+.+..++
T Consensus 196 ~~~~i~~-g~lr~Lav~~~~r~~~~pdvPt~~E~G~~~~~~~~w~gl~ap~g~p~~vv~~l~~al~~~~~~p~~~~~~~~ 274 (312)
T 2f5x_A 196 TTQQITS-GKVKAYAVTSLKRVPTLPDLPTMDESGYKGFEVGIWHGMWAPKGTPKPVVDKLVKSLQAGLADPKFQERMKQ 274 (312)
T ss_dssp HHHHHHT-TSSEEEEECSSSCCTTSTTSCBTTTTTCTTCCCEEEEEEEEETTCCHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHc-CCeEEEEEcCccchhhcCCCCCHhhcCCCCeeEEEEEEEEEcCCCCHHHHHHHHHHHHHHHcCHHHHHHHHH
Confidence 5444443 232222 1 1 01 01236889999966 999999999999999987766555
Q ss_pred h
Q 002309 814 W 814 (938)
Q Consensus 814 w 814 (938)
+
T Consensus 275 ~ 275 (312)
T 2f5x_A 275 L 275 (312)
T ss_dssp T
T ss_pred C
Confidence 4
No 153
>2hqb_A Transcriptional activator of COMK gene; berkeley structure genomics center target 1957B, structural genomics, PSI; 2.70A {Bacillus halodurans}
Probab=96.88 E-value=0.089 Score=55.10 Aligned_cols=195 Identities=13% Similarity=0.006 Sum_probs=108.4
Q ss_pred eEEEEEEeeC--CC-cchhHHHHHHHHHHHHHhcCCCCCCCCEEEEEEccCCCChHHHHHHHHHHHhcCcEEEEcCCChh
Q 002309 31 VVNVGALFTL--DS-TIGRVAKIAIEEAVKDVNSNSSILHGTKLNITMQSSNCSGFIGMVEALRFMETDIVAIIGPQCST 107 (938)
Q Consensus 31 ~i~IG~i~~~--~~-~~g~~~~~a~~~Av~~iN~~~~il~g~~l~~~~~D~~~~~~~a~~~a~~li~~~V~aviGp~~s~ 107 (938)
+.+||+++|- +. ++-.....+++.+.++. |+++. +.++..++....+....++++++.+||......
T Consensus 5 ~~~Ig~v~~~~~~d~~f~~~~~~gi~~~~~~~--------g~~~~--~~~~~~~~~~~~~~l~~l~~~~vdgIi~~~~~~ 74 (296)
T 2hqb_A 5 GGMVGLLVEDTIDDQGWNRKAYEGLLNIHSNL--------DVDVV--LEEGVNSEQKAHRRIKELVDGGVNLIFGHGHAF 74 (296)
T ss_dssp -CEEEEECCCC----CCTHHHHHHHHHHHHHS--------CCEEE--EECCCCSHHHHHHHHHHHHHTTCCEEEECSTHH
T ss_pred CcEEEEEECCCCCCCcHHHHHHHHHHHHHHHh--------CCeEE--EEeCCCCHHHHHHHHHHHHHCCCCEEEEcCHhH
Confidence 5689999973 22 44344555555554442 44443 344444444444556677777999998754332
Q ss_pred HHHHHHHhhccC-CccEEEcccCCCCCCCCCCCceEEecCCchHHHHHHHHHHHhc-CCcEEEEEEEcCccccchHHHHH
Q 002309 108 VAHIVSYVSNEL-QVPLLSFGVTDPTLSSLQYPFFVRTTQSDSYQMTAVAEMVSYY-GWNAVSVIFVDNEYGRNGVSALN 185 (938)
Q Consensus 108 ~~~~va~~~~~~-~iP~Is~~~~~~~l~~~~~p~~~r~~ps~~~~~~ai~~~l~~~-~w~~vaii~~d~~~g~~~~~~l~ 185 (938)
...+..++..+ ++|++...... . .+.+-....++..-+.....++.++ +-++|++|...... . ....+.
T Consensus 75 -~~~~~~~~~~~p~~p~v~id~~~---~---~~~~~~v~~d~~~g~~lag~la~~l~~~~~Ig~i~g~~~~-~-r~~Gf~ 145 (296)
T 2hqb_A 75 -AEYFSTIHNQYPDVHFVSFNGEV---K---GENITSLHFEGYAMGYFGGMVAASMSETHKVGVIAAFPWQ-P-EVEGFV 145 (296)
T ss_dssp -HHHHHTTTTSCTTSEEEEESCCC---C---SSSEEEEEECCHHHHHHHHHHHHHTCSSSEEEEEESCTTC-H-HHHHHH
T ss_pred -HHHHHHHHHHCCCCEEEEEecCc---C---CCCEEEEEechHHHHHHHHHHHHhhccCCeEEEEcCcCch-h-hHHHHH
Confidence 33455565544 89998764321 1 1233334444443333333334342 56899999854322 2 778899
Q ss_pred HHHhhcceEEEEEeecCCCCCCChhhHHHHHHHHhcCCceEEEEEeChhhHHHHHHHHHHcC
Q 002309 186 DKLAERRCRISYKSGIPPESGVNTGYVMDLLVKVALMESRVIVLHVSPSLGFQVFSVAKYLG 247 (938)
Q Consensus 186 ~~l~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~lk~~~~~viv~~~~~~~~~~~l~~a~~~g 247 (938)
+.+++.|.. .....+... -.+...-....+++-+.++++|+. .....+.-+++++++.|
T Consensus 146 ~~~~~~~~~-~~~~~~~~~-~~~~~~g~~~a~~ll~~~~daI~~-~~D~~a~Gv~~a~~e~G 204 (296)
T 2hqb_A 146 DGAKYMNES-EAFVRYVGE-WTDADKALELFQELQKEQVDVFYP-AGDGYHVPVVEAIKDQG 204 (296)
T ss_dssp HHHHHTTCC-EEEEEECSS-SSCHHHHHHHHHHHHTTTCCEEEC-CCTTTHHHHHHHHHHHT
T ss_pred HHHHHhCCC-eEEEEeecc-ccCHHHHHHHHHHHHHCCCcEEEE-CCCCCCHHHHHHHHHcC
Confidence 999988874 322222211 011233344455555567887654 44556777889999887
No 154
>3miz_A Putative transcriptional regulator protein, LACI family; LACL family, protein structure initiative II (PSI II), NYSGXRC, structural genomics; 1.91A {Rhizobium etli}
Probab=96.88 E-value=0.0012 Score=69.74 Aligned_cols=204 Identities=13% Similarity=0.081 Sum_probs=125.8
Q ss_pred eeEEEEEEeeCCC-cchh-HHHHHHHHHHHHHhcCCCCCCCCEEEEEEccCCCChHHHHHHHHHHHhcCcEEEEc-CCCh
Q 002309 30 AVVNVGALFTLDS-TIGR-VAKIAIEEAVKDVNSNSSILHGTKLNITMQSSNCSGFIGMVEALRFMETDIVAIIG-PQCS 106 (938)
Q Consensus 30 ~~i~IG~i~~~~~-~~g~-~~~~a~~~Av~~iN~~~~il~g~~l~~~~~D~~~~~~~a~~~a~~li~~~V~aviG-p~~s 106 (938)
..-+||+++|... .+-. ....+++-+.++. |+.+. +.++..++....+....++.++|.+||- |...
T Consensus 12 ~s~~Igvi~~~~~~~~~~~~~~~gi~~~a~~~--------g~~~~--~~~~~~~~~~~~~~~~~l~~~~vdGiIi~~~~~ 81 (301)
T 3miz_A 12 RSNTFGIITDYVSTTPYSVDIVRGIQDWANAN--------GKTIL--IANTGGSSEREVEIWKMFQSHRIDGVLYVTMYR 81 (301)
T ss_dssp CCCEEEEEESSTTTCCSCHHHHHHHHHHHHHT--------TCEEE--EEECTTCHHHHHHHHHHHHHTTCSEEEEEEEEE
T ss_pred CCCEEEEEeCCCcCcccHHHHHHHHHHHHHHC--------CCEEE--EEeCCCChHHHHHHHHHHHhCCCCEEEEecCCc
Confidence 4578999999753 2223 5667776666553 45554 4556667766666667777778877763 2222
Q ss_pred hHHHHHHHhhccCCccEEEcccCCCCCCCCCCCceEEecCCchHHHHHHHHHHHhcCCcEEEEEEEcCc--cccchHHHH
Q 002309 107 TVAHIVSYVSNELQVPLLSFGVTDPTLSSLQYPFFVRTTQSDSYQMTAVAEMVSYYGWNAVSVIFVDNE--YGRNGVSAL 184 (938)
Q Consensus 107 ~~~~~va~~~~~~~iP~Is~~~~~~~l~~~~~p~~~r~~ps~~~~~~ai~~~l~~~~w~~vaii~~d~~--~g~~~~~~l 184 (938)
.. ....+...++|+|......+.. +.+-.+..++...+...++++...|.++|++|..... ......+.+
T Consensus 82 ~~---~~~~~~~~~iPvV~~~~~~~~~-----~~~~~V~~D~~~~g~~a~~~L~~~G~~~I~~i~~~~~~~~~~~R~~Gf 153 (301)
T 3miz_A 82 RI---VDPESGDVSIPTVMINCRPQTR-----ELLPSIEPDDYQGARDLTRYLLERGHRRIGYIRLNPILLGAELRLDAF 153 (301)
T ss_dssp EE---CCCCCTTCCCCEEEEEEECSST-----TSSCEEEECHHHHHHHHHHHHHTTTCCSEEEEECCTTSHHHHHHHHHH
T ss_pred cH---HHHHHHhCCCCEEEECCCCCCC-----CCCCEEeeChHHHHHHHHHHHHHcCCCeEEEEecCccchhHHHHHHHH
Confidence 22 3445667799999875433221 0233466788888999999998899999999985433 344667889
Q ss_pred HHHHhhcceEEE----EEe---ecCCCCCCChhhHHHHHHHHhc--CCceEEEEEeChhhHHHHHHHHHHcCCCCCCeEE
Q 002309 185 NDKLAERRCRIS----YKS---GIPPESGVNTGYVMDLLVKVAL--MESRVIVLHVSPSLGFQVFSVAKYLGMMGNGYVW 255 (938)
Q Consensus 185 ~~~l~~~g~~v~----~~~---~~~~~~~~~~~d~~~~l~~lk~--~~~~viv~~~~~~~~~~~l~~a~~~g~~~~~~~w 255 (938)
.+++++.|+.+. ... .+... .......+.++-+ ..+++|+ +++...+..+++++++.|+..++-+-
T Consensus 154 ~~al~~~g~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~l~~~~~~~ai~-~~~d~~A~g~~~al~~~g~~vP~di~ 228 (301)
T 3miz_A 154 RRTTSEFGLTENDLSISLGMDGPVGAE----NNYVFAAATEMLKQDDRPTAIM-SGNDEMAIQIYIAAMALGLRIPQDVS 228 (301)
T ss_dssp HHHHHHHTCCGGGEEEEECEESSTTSC----EECHHHHHHHHHTSTTCCSEEE-ESSHHHHHHHHHHHHTTTCCHHHHCE
T ss_pred HHHHHHcCCCCCcceEEEcCCCCcCcc----ccHHHHHHHHHHcCCCCCcEEE-ECCHHHHHHHHHHHHHcCCCCCCCee
Confidence 999999887531 111 11111 1111133333333 3466654 44556778899999999986544333
Q ss_pred E
Q 002309 256 I 256 (938)
Q Consensus 256 i 256 (938)
+
T Consensus 229 v 229 (301)
T 3miz_A 229 I 229 (301)
T ss_dssp E
T ss_pred E
Confidence 3
No 155
>2qpq_A Protein BUG27; alpha/beta domain, venus flytrap, transport protein; HET: CIT; 1.92A {Bordetella pertussis}
Probab=96.87 E-value=0.0076 Score=63.27 Aligned_cols=121 Identities=12% Similarity=0.148 Sum_probs=79.9
Q ss_pred CCCCChHHhhhC------CCCeeEEe-CchHH---HHHHHhcccccccccccCCHHHHHHHHhcCCCCCceEEEEecchh
Q 002309 688 SPINGIESLRKS------DDPIGYQE-GSFAE---YYLSQELNISKSRLVALRTPEDYAKALKDGPGKGGVAAVVDERPY 757 (938)
Q Consensus 688 ~~i~s~~dL~~~------~~~i~~~~-~s~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~a~i~~~~~ 757 (938)
.+++|++||... ...+|... |+..+ ..+.+..+.. ...++|....+.+.+|.. |++|+.+.+...
T Consensus 112 s~~~sl~dL~~~ak~~p~~~~~g~~g~Gs~~hl~~~~l~~~~G~~-~~~Vpy~g~~~a~~al~~----G~vD~~~~~~~~ 186 (301)
T 2qpq_A 112 SKYKTLGELMAAAKQTNTQVTYGSCGNGTPQHLAGELLNVSAKTH-MVHVPYKGCGPALNDVLG----SQIGLAVVTASS 186 (301)
T ss_dssp CSCCSHHHHHHHTCSSSCCCEEEESSTTSHHHHHHHHHHHHHTCC-CEEEECSSHHHHHHHHHT----TSSSCEEEEHHH
T ss_pred CCCCCHHHHHHHHHhCCCceEEecCCCCcHHHHHHHHHHHHhCCC-eEEeccCChHHHHHHHHC----CCccEEEEcHHH
Confidence 578999999741 12345442 44322 2333344443 234678888999999999 899999988766
Q ss_pred HHHHHhcCCcEEEeC---c----------c--------c-cccceEeeecCCCc--chhhHHHHHHhhhccCcHHHHHHh
Q 002309 758 VELFLSSQCSFRIVG---Q----------E--------F-TKSGWGFAFPRDSP--LAVDLSSAILELAENGDLQRIHDK 813 (938)
Q Consensus 758 ~~~~~~~~~~l~~~~---~----------~--------~-~~~~~~~~~~k~sp--l~~~i~~~il~l~e~G~~~~l~~~ 813 (938)
...+++. .++..+. + . + ....++++.|+|-| ....+++++.++.+++.+++..++
T Consensus 187 ~~~~i~~-g~lr~Lav~~~~r~~~~pdvPt~~e~G~~~~~~~~w~gl~ap~g~p~~vv~~l~~al~~~~~~~~~~~~~~~ 265 (301)
T 2qpq_A 187 AIPFIKA-GKLQALAVTSKERSALLPEVPTVAEQGVAGYELNQWHGLLVPGATPMAVRQKLYDGIAKVMQRDDVQKKLAD 265 (301)
T ss_dssp HHHHHHT-TSEEEEEECSSSCCTTCTTSCBSGGGTCTTCCCEEEEEEEEETTCCHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHhc-CCeEEEEEcCCccccccCCCCChHHhCCCceEEEeEEEEEecCCCCHHHHHHHHHHHHHHHcCHHHHHHHHH
Confidence 5444433 3343321 0 0 1 12236889999966 999999999999999988776666
Q ss_pred h
Q 002309 814 W 814 (938)
Q Consensus 814 w 814 (938)
+
T Consensus 266 ~ 266 (301)
T 2qpq_A 266 L 266 (301)
T ss_dssp H
T ss_pred C
Confidence 5
No 156
>1jye_A Lactose operon repressor; gene regulation, protein stability, protein DNA-binding, transcription; 1.70A {Escherichia coli} SCOP: c.93.1.1 PDB: 1lbi_A 1lbg_A* 1lbh_A 1jyf_A 3edc_A 1efa_A* 1jwl_A* 2pe5_A* 1tlf_A* 2p9h_A* 2paf_A* 1cjg_A* 1l1m_A 1osl_A 2kei_A* 2kej_A* 2kek_A* 2bjc_A 1lqc_A 1lcc_A* ...
Probab=96.82 E-value=0.048 Score=58.78 Aligned_cols=204 Identities=9% Similarity=0.037 Sum_probs=116.3
Q ss_pred eeEEEEEEeeCC-CcchhHHHHHHHHHHHHHhcCCCCCCCCEEEEEEccCCCC-hHHHHHHHHHHHhcCcEEEE--cCCC
Q 002309 30 AVVNVGALFTLD-STIGRVAKIAIEEAVKDVNSNSSILHGTKLNITMQSSNCS-GFIGMVEALRFMETDIVAII--GPQC 105 (938)
Q Consensus 30 ~~i~IG~i~~~~-~~~g~~~~~a~~~Av~~iN~~~~il~g~~l~~~~~D~~~~-~~~a~~~a~~li~~~V~avi--Gp~~ 105 (938)
...+||++.|.- ..+-.....+++.+.++ .|+.+.+. ++..+ +..-......++.++|.+|| +|..
T Consensus 60 ~~~~Igvi~~~~~~~~~~~~~~gi~~~a~~--------~g~~~~~~--~~~~~~~~~~~~~l~~l~~~~vdGiIi~~~~~ 129 (349)
T 1jye_A 60 QSLLIGVATSSLALHAPSQIVAAILSRADQ--------LGASVVVS--MVERSGVEACKTAVHNLLAQRVSGLIINYPLD 129 (349)
T ss_dssp --CEEEEEESCTTSHHHHHHHHHHHHHHHH--------TTCEEEEE--ECCSSSHHHHHHHHHHHHTTTCSCEEEESCCC
T ss_pred CCCEEEEEeCCCCcccHHHHHHHHHHHHHH--------cCCEEEEE--eCCCCcHHHHHHHHHHHHHCCCCEEEEecCCC
Confidence 356899999853 33323344555444433 25665553 33333 33334445566677776665 4544
Q ss_pred hhHHHHHHHhhccCCccEEEcccCCCCCCCCCCCceEEecCCchHHHHHHHHHHHhcCCcEEEEEEEcCc--cccchHHH
Q 002309 106 STVAHIVSYVSNELQVPLLSFGVTDPTLSSLQYPFFVRTTQSDSYQMTAVAEMVSYYGWNAVSVIFVDNE--YGRNGVSA 183 (938)
Q Consensus 106 s~~~~~va~~~~~~~iP~Is~~~~~~~l~~~~~p~~~r~~ps~~~~~~ai~~~l~~~~w~~vaii~~d~~--~g~~~~~~ 183 (938)
... .+...+...++|+|...... ....+ .+..++...+...++++...|.++|++|..+.. ......+.
T Consensus 130 ~~~--~~~~~~~~~~iPvV~i~~~~----~~~~~---~V~~d~~~~~~~a~~~L~~~G~~~I~~i~g~~~~~~~~~R~~G 200 (349)
T 1jye_A 130 DQD--AIAVEAACTNVPALFLDVSD----QTPIN---SIIFSHEDGTRLGVEHLVALGHQQIALLAGPLSSVSARLRLAG 200 (349)
T ss_dssp HHH--HHHHHHHTTTSCEEESSSCT----TSSSC---EEEECHHHHHHHHHHHHHHHTCCSEEEEECCTTSHHHHHHHHH
T ss_pred Chh--HHHHHHhhCCCCEEEEcccC----CCCCC---EEEEchHHHHHHHHHHHHHCCCCEEEEEeCCCCCccHHHHHHH
Confidence 322 22333445799999864321 11222 355667777777888887789999999985432 34456788
Q ss_pred HHHHHhhcceEEEEEeecCCCCCCChhhHHHHHHHHhc--CCceEEEEEeChhhHHHHHHHHHHcCCCCCCeEEEE
Q 002309 184 LNDKLAERRCRISYKSGIPPESGVNTGYVMDLLVKVAL--MESRVIVLHVSPSLGFQVFSVAKYLGMMGNGYVWIA 257 (938)
Q Consensus 184 l~~~l~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~lk~--~~~~viv~~~~~~~~~~~l~~a~~~g~~~~~~~wi~ 257 (938)
+.+++++.|+.+.... ... .+..+-...+.++-. ..++.|+. .+...+..+++++++.|+..++-+-+.
T Consensus 201 f~~al~~~gi~~~~~~--~~~--~~~~~~~~~~~~ll~~~~~~~ai~~-~nD~~A~g~~~al~~~G~~vP~disvv 271 (349)
T 1jye_A 201 WHKYLTRNQIQPIAER--EGD--WSAMSGFQQTMQMLNEGIVPTAMLV-ANDQMALGAMRAITESGLRVGADISVV 271 (349)
T ss_dssp HHHHHHHTTCCCSEEE--ECC--SSHHHHHHHHHHHHHTTCCCSEEEE-SSHHHHHHHHHHHHHTTCCBTTTBEEE
T ss_pred HHHHHHHcCCCccccc--cCC--CChHHHHHHHHHHHhCCCCCCEEEE-CChHHHHHHHHHHHHcCCCCCCcEEEE
Confidence 9999999987542211 111 112222333444333 24666554 455667889999999998765444443
No 157
>2ih3_C Voltage-gated potassium channel; ION channel D-amino acid semi-synthetic, membrane protein; HET: 1EM; 1.72A {Streptomyces lividans} PDB: 2ih1_C* 1r3j_C* 1k4d_C* 1r3i_C* 1k4c_C* 1r3k_C* 1r3l_C* 2bob_C* 2boc_C* 2hvj_C* 2hvk_C* 2itc_C 2itd_C 3gb7_C* 3iga_C* 1jvm_A 1s5h_C* 3ifx_A* 1j95_A 2jk5_C* ...
Probab=96.81 E-value=0.0016 Score=58.00 Aligned_cols=77 Identities=17% Similarity=0.191 Sum_probs=62.9
Q ss_pred HHHhhhheeecccCCCCCCCccccchhhhhHHHHHHHhhhhhhhhhhcccCccccchhHHHHHHHHHHHHHHhhhhhhhh
Q 002309 599 VVGIVVWILEHRINDEFRGPPKRQVITILWFSLSTLFFAHIAIFVILAEENTVSTLGRLVLIIWLFVVLIINSSYTASLT 678 (938)
Q Consensus 599 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~p~s~s~R~~~~~w~~~~lil~s~Yta~L~ 678 (938)
+.+.++|.+|+.. .++...++.+++||++.++..-| +++..|.+..+|++.++|.++++.+.+..+++++
T Consensus 42 ~~a~~~~~~E~~~----~~~~~~~~~~a~y~~~~T~tTvG------yGDi~P~t~~gr~~~~~~~~~Gi~~~~~~~~~i~ 111 (122)
T 2ih3_C 42 AGSYLAVLAERGA----PGAQLITYPRALWWACETATTVA------YGDLYPVTLWGRLVAVVVMVAGITSFGLVTAALA 111 (122)
T ss_dssp HHHHHHHHHHTTS----TTCCCCSHHHHHHHHHHHHTTCC------CSSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhheeeecC----CCCccCccccchhheeeeeeeee------cCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455667777643 23334578999999999998877 6688999999999999999999999999999999
Q ss_pred hhhhccc
Q 002309 679 SILTVQQ 685 (938)
Q Consensus 679 s~Lt~~~ 685 (938)
+.++...
T Consensus 112 ~~~~~~~ 118 (122)
T 2ih3_C 112 TWFVGRE 118 (122)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9987643
No 158
>2dvz_A BUGE, putative exported protein; periplamsic binding proteins, carboxylate binding, glutamate, transport protein; HET: GLU; 2.30A {Bordetella pertussis}
Probab=96.74 E-value=0.0086 Score=63.17 Aligned_cols=121 Identities=11% Similarity=0.135 Sum_probs=79.1
Q ss_pred CCCCChHHhhhC------CCCeeEE-eCchHH---HHHHHhcccccccccccCCHHHHHHHHhcCCCCCceEEEEecchh
Q 002309 688 SPINGIESLRKS------DDPIGYQ-EGSFAE---YYLSQELNISKSRLVALRTPEDYAKALKDGPGKGGVAAVVDERPY 757 (938)
Q Consensus 688 ~~i~s~~dL~~~------~~~i~~~-~~s~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~a~i~~~~~ 757 (938)
.+++|++||... ...+|.. .|+... ..+.+..+.. ...++|....+.+.+|.. |++|+++.....
T Consensus 125 s~~~tl~dL~~~ak~~p~~~~~g~~g~Gs~~hl~~~~l~~~~Gi~-~~~Vpy~G~~~a~~al~~----G~vD~~~~~~~~ 199 (314)
T 2dvz_A 125 FPAKDFKGFLEELKKNPGKYSYGSSGTCGVLHLMGESFKMATGTD-IVHVPYKGSGPAVADAVG----GQIELIFDNLPS 199 (314)
T ss_dssp SSCSSHHHHHHHHHTSTTTCEEEESCTTSHHHHHHHHHHHHHTCC-CEEEECSSHHHHHHHHHH----TSSSEEEEEHHH
T ss_pred CCCCCHHHHHHHHHhCCCcEEEeCCCCCcHHHHHHHHHHHHhCCC-eEEcccCCHHHHHHHHHc----CCceEEEEcHHH
Confidence 578999999741 1235544 244322 2333444443 234678888899999999 899999988766
Q ss_pred HHHHHhcCCcEEEe---Cc----------c--------cc-ccceEeeecCCCc--chhhHHHHHHhhhccCcHHHHHHh
Q 002309 758 VELFLSSQCSFRIV---GQ----------E--------FT-KSGWGFAFPRDSP--LAVDLSSAILELAENGDLQRIHDK 813 (938)
Q Consensus 758 ~~~~~~~~~~l~~~---~~----------~--------~~-~~~~~~~~~k~sp--l~~~i~~~il~l~e~G~~~~l~~~ 813 (938)
...+++. +++..+ ++ . +. ...++++.|+|-| ....+++++.++.+++.+.+..++
T Consensus 200 ~~~~i~~-g~lr~Lav~~~~r~~~~pdvPt~~e~G~~~~~~~~w~gl~ap~g~p~~vv~~l~~al~~~~~~p~~~~~~~~ 278 (314)
T 2dvz_A 200 SMPQIQA-GKLRAMAIAWPTRIDAIKDVPTFADAGFPVLNQPVWYGLLAPKGTPMDVVNKLRDAAVVALKDPKVIKALDD 278 (314)
T ss_dssp HHHHHHT-TSSEEEEEESSSCCGGGTTSCBTTTTTCGGGCCCEEEEEEEETTCCHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHc-CCEEEEEecCccccccCCCCCCHHhcCCCceEEeEEEEEEEcCCCCHHHHHHHHHHHHHHHcCHHHHHHHHH
Confidence 5444433 222222 10 0 10 1236889999966 999999999999999987776665
Q ss_pred h
Q 002309 814 W 814 (938)
Q Consensus 814 w 814 (938)
+
T Consensus 279 ~ 279 (314)
T 2dvz_A 279 Q 279 (314)
T ss_dssp H
T ss_pred C
Confidence 5
No 159
>3eff_K Voltage-gated potassium channel; FULL length KCSA, bulge helix, cell membrane, ION transport, ionic channel, membrane, transmembrane; 3.80A {Streptomyces lividans}
Probab=96.50 E-value=0.004 Score=56.95 Aligned_cols=74 Identities=19% Similarity=0.223 Sum_probs=60.0
Q ss_pred HhhhheeecccCCCCCCCccccchhhhhHHHHHHHhhhhhhhhhhcccCccccchhHHHHHHHHHHHHHHhhhhhhhhhh
Q 002309 601 GIVVWILEHRINDEFRGPPKRQVITILWFSLSTLFFAHIAIFVILAEENTVSTLGRLVLIIWLFVVLIINSSYTASLTSI 680 (938)
Q Consensus 601 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~p~s~s~R~~~~~w~~~~lil~s~Yta~L~s~ 680 (938)
+.+++.+++.. .++...++.+++||++.++..-| +++..|.+..+|++.++|.++++.+.+...+.+++.
T Consensus 23 a~~~~~~e~~~----~~~~~~~~~~a~yf~~~T~tTvG------yGd~~P~t~~~r~~~~~~~~~G~~~~~~~~~~i~~~ 92 (139)
T 3eff_K 23 SYLAVLAERGA----PGAQLITYPRALWWSVETATTVG------YGDLYPVTLWGRLVAVVVMVAGITSFGLVTAALATW 92 (139)
T ss_dssp HHHHHHTTSSC----TTCCCCCHHHHHHHHHHHHTTCC------CSSSCCCSSHHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHhcCC----CCcccCCHHHHHHHHheeeeccc------CCCCcCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556665533 23334578999999999998877 678899999999999999999999999999999998
Q ss_pred hhcc
Q 002309 681 LTVQ 684 (938)
Q Consensus 681 Lt~~ 684 (938)
+...
T Consensus 93 ~~~~ 96 (139)
T 3eff_K 93 FVGR 96 (139)
T ss_dssp TTHH
T ss_pred HHHH
Confidence 8543
No 160
>2a9h_A Voltage-gated potassium channel; potassium channel, KCSA, structure, membrane protein, metal transport; HET: PCA; NMR {Streptomyces lividans} SCOP: f.14.1.1
Probab=96.50 E-value=0.0043 Score=57.52 Aligned_cols=78 Identities=14% Similarity=0.156 Sum_probs=63.4
Q ss_pred HHHhhhheeecccCCCCCCCccccchhhhhHHHHHHHhhhhhhhhhhcccCccccchhHHHHHHHHHHHHHHhhhhhhhh
Q 002309 599 VVGIVVWILEHRINDEFRGPPKRQVITILWFSLSTLFFAHIAIFVILAEENTVSTLGRLVLIIWLFVVLIINSSYTASLT 678 (938)
Q Consensus 599 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~p~s~s~R~~~~~w~~~~lil~s~Yta~L~ 678 (938)
+.+.++|.+|+..+ ++...++.+++||++.++..-| +++..|.+..+|++.++|.++++.+.+..++.++
T Consensus 65 ~~a~~~~~~E~~~~----~~~~~s~~~a~y~s~vTltTVG------YGDi~P~t~~gr~~~~~~~l~Gv~~~a~~~~~i~ 134 (155)
T 2a9h_A 65 AGSYLAVLAERGAP----GAALISYPDALWWSVETATTVG------YGDLYPVTLWGRCVAVVVMVAGITSYGLVFAAVA 134 (155)
T ss_dssp HHHHHHHHHHTTSS----CSSTTSHHHHHHHHHHHHTTCC------CSSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccCC----CCccCcccceeheeeeeeeccc------CCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33555677776432 2334578999999999998887 6688899999999999999999999999999999
Q ss_pred hhhhcccc
Q 002309 679 SILTVQQL 686 (938)
Q Consensus 679 s~Lt~~~~ 686 (938)
+.++....
T Consensus 135 ~~~~~~~~ 142 (155)
T 2a9h_A 135 TWFVGREQ 142 (155)
T ss_dssp HHHHSCCC
T ss_pred HHHHHHHH
Confidence 99987543
No 161
>3h5t_A Transcriptional regulator, LACI family; DNA-dependent, protein structure initiative II(PSI II), NYSGXRC, 11232D), structural genomics; 2.53A {Corynebacterium glutamicum}
Probab=96.34 E-value=0.037 Score=60.14 Aligned_cols=207 Identities=11% Similarity=0.056 Sum_probs=115.7
Q ss_pred eeEEEEEEeeCCCc--chhHHHHHHHHHHHHHhcCCCCCCCCEEEEEEccCCCChHHHHHHHHHHHhcCcEEEEc-CCCh
Q 002309 30 AVVNVGALFTLDST--IGRVAKIAIEEAVKDVNSNSSILHGTKLNITMQSSNCSGFIGMVEALRFMETDIVAIIG-PQCS 106 (938)
Q Consensus 30 ~~i~IG~i~~~~~~--~g~~~~~a~~~Av~~iN~~~~il~g~~l~~~~~D~~~~~~~a~~~a~~li~~~V~aviG-p~~s 106 (938)
..-+||+++|.... ....+...+..++++.=+ |+.+.+...+...+. .-.+....+..++|.+||- |...
T Consensus 67 ~s~~Igvi~~~~~~~~~~~~~~~~~~~gi~~~a~------g~~~~~~~~~~~~~~-~~~~~~~~l~~~~vdGiIi~~~~~ 139 (366)
T 3h5t_A 67 RAGAIGVLLTEDLTYAFEDMASVDFLAGVAQAAG------DTQLTLIPASPASSV-DHVSAQQLVNNAAVDGVVIYSVAK 139 (366)
T ss_dssp -CCEEEEEESSCTTHHHHSHHHHHHHHHHHHHSS------SCEEEEEECCCCTTC-CHHHHHHHHHTCCCSCEEEESCCT
T ss_pred CCCEEEEEecCCccccccCHHHHHHHHHHHHHHh------hCCEEEEEcCCCccH-HHHHHHHHHHhCCCCEEEEecCCC
Confidence 35689999997422 112233333334443311 566666655533321 1223344555666766552 2221
Q ss_pred hHHHHHHHhhccCCccEEEcccCCCCCCCCCCCceEEecCCchHHHHHHHHHHHhcCCcEEEEEEEc-------------
Q 002309 107 TVAHIVSYVSNELQVPLLSFGVTDPTLSSLQYPFFVRTTQSDSYQMTAVAEMVSYYGWNAVSVIFVD------------- 173 (938)
Q Consensus 107 ~~~~~va~~~~~~~iP~Is~~~~~~~l~~~~~p~~~r~~ps~~~~~~ai~~~l~~~~w~~vaii~~d------------- 173 (938)
.. .....+...++|+|...... .... +-.+..++...+...+++|...|.+++++|...
T Consensus 140 -~~-~~~~~l~~~~iPvV~i~~~~---~~~~---~~~V~~D~~~~~~~a~~~L~~~G~r~I~~i~~~~~~~~~~g~~~~~ 211 (366)
T 3h5t_A 140 -GD-PHIDAIRARGLPAVIADQPA---REEG---MPFIAPNNRKAIAPAAQALIDAGHRKIGILSIRLDRANNDGEVTRE 211 (366)
T ss_dssp -TC-HHHHHHHHHTCCEEEESSCC---SCTT---CCEEEECHHHHTHHHHHHHHHTTCCSEEEEEECCSSSCCCEECCHH
T ss_pred -Ch-HHHHHHHHCCCCEEEECCcc---CCCC---CCEEEeChHHHHHHHHHHHHHCCCCcEEEEecccccccccCccccc
Confidence 11 22334455699999864422 1122 234567888888999999988999999999832
Q ss_pred ------CccccchHHHHHHHHhhcceEEEEEeec-CCCCCCChhhHHHHHHHHhc--CCceEEEEEeChhhHHHHHHHHH
Q 002309 174 ------NEYGRNGVSALNDKLAERRCRISYKSGI-PPESGVNTGYVMDLLVKVAL--MESRVIVLHVSPSLGFQVFSVAK 244 (938)
Q Consensus 174 ------~~~g~~~~~~l~~~l~~~g~~v~~~~~~-~~~~~~~~~d~~~~l~~lk~--~~~~viv~~~~~~~~~~~l~~a~ 244 (938)
........+.+.+++++.|+.+.....+ ... .+..+-...+.++-+ ..+++|+. ++...+..++++++
T Consensus 212 ~~~~~~~~~~~~R~~Gf~~al~~~g~~~~~~~~~~~~~--~~~~~~~~~~~~ll~~~~~~~ai~~-~nD~~A~g~~~al~ 288 (366)
T 3h5t_A 212 RLENAQYQVQRDRVRGAMEVFIEAGIDPGTVPIMECWI--NNRQHNFEVAKELLETHPDLTAVLC-TVDALAFGVLEYLK 288 (366)
T ss_dssp HHHTCCCTTHHHHHHHHHHHHHHHTCCGGGSCEEEESS--CCHHHHHHHHHHHHHHCTTCCEEEE-SSHHHHHHHHHHHH
T ss_pred cccccccchHHHHHHHHHHHHHHCCCCCCcceEEEcCC--CCHHHHHHHHHHHHcCCCCCcEEEE-CCcHHHHHHHHHHH
Confidence 2233456788999999998753210000 011 123333344444432 34666554 45567778999999
Q ss_pred HcCCCCCCeE
Q 002309 245 YLGMMGNGYV 254 (938)
Q Consensus 245 ~~g~~~~~~~ 254 (938)
+.|+..++-+
T Consensus 289 ~~G~~vP~di 298 (366)
T 3h5t_A 289 SVGKSAPADL 298 (366)
T ss_dssp HTTCCTTTTC
T ss_pred HcCCCCCCce
Confidence 9998765433
No 162
>3qi7_A Putative transcriptional regulator; periplasmic binding protein-like, structural genomics, joint for structural genomics, JCSG; HET: MSE; 1.86A {Clostridium difficile}
Probab=96.08 E-value=0.11 Score=55.20 Aligned_cols=217 Identities=12% Similarity=0.015 Sum_probs=125.3
Q ss_pred eeEEEEEEeeCCCcchhHHHHHHHHHHHHHhcCCCCC--C-C--CEEEEEEccCCCCh-----HHHHHHHHHHHhc-CcE
Q 002309 30 AVVNVGALFTLDSTIGRVAKIAIEEAVKDVNSNSSIL--H-G--TKLNITMQSSNCSG-----FIGMVEALRFMET-DIV 98 (938)
Q Consensus 30 ~~i~IG~i~~~~~~~g~~~~~a~~~Av~~iN~~~~il--~-g--~~l~~~~~D~~~~~-----~~a~~~a~~li~~-~V~ 98 (938)
.+++||++...-+. .....++++..+++.|..+... . | ..+++++..+-.|+ ..+++...++... ++.
T Consensus 11 ~~~~igi~t~t~s~-se~t~~~a~~~i~~yg~~pn~~~l~~~~s~~iG~I~~~~~pd~F~se~~ttI~~I~~~a~~~gyk 89 (371)
T 3qi7_A 11 DDFKVAVVTQPLSE-NKVQYNMVEEMAKEYEEENKIDKDKDGQTKVKQTIKHVVLPENFTSNIDSAINKIVKLADDKEVQ 89 (371)
T ss_dssp CCEEEEEEECCTTT-CHHHHHHHHHHHHHHHHHTTCCC-----CCCCEEEEEEECCTTGGGGHHHHHHHHHGGGGCTTEE
T ss_pred CCeEEEEEcCCcCC-CHHHHHHHHHHHHHhCCCcccchhcccccccceEEEEeccCCCchHHHHHHHHHHHHHhhcCCCe
Confidence 46999999876433 3577899999999998754321 0 1 22334444433333 3345555555555 787
Q ss_pred EEEcCCChhHHHHHHHhhccCCccEEEcccCCCCCCC--CCCCceEEecCCchHHHHHHHHHHHhcCCcEEEEEEEcCc-
Q 002309 99 AIIGPQCSTVAHIVSYVSNELQVPLLSFGVTDPTLSS--LQYPFFVRTTQSDSYQMTAVAEMVSYYGWNAVSVIFVDNE- 175 (938)
Q Consensus 99 aviGp~~s~~~~~va~~~~~~~iP~Is~~~~~~~l~~--~~~p~~~r~~ps~~~~~~ai~~~l~~~~w~~vaii~~d~~- 175 (938)
+||.-............+...+++.|-+.+....-.. ..+.. +.+..++..-+...++.+...|-+++++|.....
T Consensus 90 ~II~n~~~~~~~~~i~~lkekrvDgIIi~~~~~ed~~~i~~~~d-i~V~~Dn~~Ggy~A~~~Li~~Ghk~Ia~Isgp~~~ 168 (371)
T 3qi7_A 90 AIVVSTDQAGLLPALQKVKEKRPEIITISAPMGDDKNQLSQFVD-VNLGVSAEERGKVLAERSKEMGAKAFIHYASTDDL 168 (371)
T ss_dssp EEEEECSSCCCHHHHHHHHHHCTTSEEEESSCCSCHHHHHHHSS-EEEECCHHHHHHHHHHHHHHTTCSCEEEEEETTGG
T ss_pred EEEEECCCcchHHHHHHHHhcCCCEEEEeccccccchhhcccCc-eEEEeChHHHHHHHHHHHHHCCCCEEEEEeccccc
Confidence 7775433322233344555555555443332111000 00111 2466677777888889999999999999986432
Q ss_pred -c--ccchHHHHHHHHhhcceEEEEEeecCCCCCCChhh---HHHHHHH-----HhcCCceEEEEEeChhhHHHHHHHHH
Q 002309 176 -Y--GRNGVSALNDKLAERRCRISYKSGIPPESGVNTGY---VMDLLVK-----VALMESRVIVLHVSPSLGFQVFSVAK 244 (938)
Q Consensus 176 -~--g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~d---~~~~l~~-----lk~~~~~viv~~~~~~~~~~~l~~a~ 244 (938)
+ .....+.+++++++.|+.+.......+. .... ...+|.+ +++.+..--|++++-..+..++++++
T Consensus 169 ~~~~~~~R~~Gyk~Al~e~Gi~~~~~~~~d~t---~e~G~~~a~~lL~~~~~~~~~~~~~~TAIFatND~mAiG~ikal~ 245 (371)
T 3qi7_A 169 KDVNIAKRLEMIKETCKNIGLPFVQVNTPNIN---TEEDKNKVKQFLNEDIEKQVKKYGKDINVFGVNEYMDEVILTKAL 245 (371)
T ss_dssp GSHHHHHHHHHHHHHHHHTTCCEEEEEECCCS---STHHHHHHHHHHHHHHHHHHHHHCSCCEEEESSHHHHHHHHHHHH
T ss_pred cchhHHHHHHHHHHHHHHcCCCceeecCCCCc---hHHHHHHHHHHHhccccchhhccCCCcEEEECCHHHHHHHHHHHH
Confidence 2 2335778999999999976544322222 1222 2222221 11222323566677788999999999
Q ss_pred HcCCCCC
Q 002309 245 YLGMMGN 251 (938)
Q Consensus 245 ~~g~~~~ 251 (938)
+.|...+
T Consensus 246 e~Gi~VP 252 (371)
T 3qi7_A 246 ELKYIVA 252 (371)
T ss_dssp HHCCBBC
T ss_pred HcCCccC
Confidence 9997543
No 163
>4h33_A LMO2059 protein; bilayers, KVLM, lipidic cubic phase (LCP), pore module, ION membrane protein; HET: OLC; 3.10A {Listeria monocytogenes} PDB: 4h37_A
Probab=96.01 E-value=0.011 Score=53.58 Aligned_cols=59 Identities=15% Similarity=0.318 Sum_probs=53.1
Q ss_pred ccchhhhhHHHHHHHhhhhhhhhhhcccCccccchhHHHHHHHHHHHHHHhhhhhhhhhhhhccc
Q 002309 621 RQVITILWFSLSTLFFAHIAIFVILAEENTVSTLGRLVLIIWLFVVLIINSSYTASLTSILTVQQ 685 (938)
Q Consensus 621 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~p~s~s~R~~~~~w~~~~lil~s~Yta~L~s~Lt~~~ 685 (938)
.+..+++||++.++..-| +++..|.+..+|++.++|+++++.+.+..++.+++.+....
T Consensus 42 ~~~~~a~y~~~~T~tTvG------yGDi~P~t~~gr~~~~~~~~~g~~~~~~~~~~i~~~~~~~~ 100 (137)
T 4h33_A 42 NNYPDALWWAIVTATTVG------YGDIVPVTPIGRILASIMMLFGIAFIGMITSTITNFFRCKK 100 (137)
T ss_dssp CSHHHHHHHHHHHHTTCC------CSSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTTT
T ss_pred CCHHHHHHHHHHHHHccc------CCCCCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 468899999999998877 67889999999999999999999999999999999886543
No 164
>3ixl_A Amdase, arylmalonate decarboxylase; enantioselective decarboxylation, lyase; HET: CME PAC; 1.45A {Bordetella bronchiseptica} PDB: 3ixm_A 2vlb_A 3dg9_A 3ip8_A* 3dtv_A* 3eis_A*
Probab=95.81 E-value=0.12 Score=52.01 Aligned_cols=127 Identities=19% Similarity=0.120 Sum_probs=88.8
Q ss_pred HHHHHHhcCcEEEEcCCChhHH--------HHHHHhhccCCccEEEcccCCCCCCCCCCCceEEecCCchHHHHHHHHHH
Q 002309 88 EALRFMETDIVAIIGPQCSTVA--------HIVSYVSNELQVPLLSFGVTDPTLSSLQYPFFVRTTQSDSYQMTAVAEMV 159 (938)
Q Consensus 88 ~a~~li~~~V~aviGp~~s~~~--------~~va~~~~~~~iP~Is~~~~~~~l~~~~~p~~~r~~ps~~~~~~ai~~~l 159 (938)
++.+|...++.+|+-+.++... .....+.+..++|+++. +.++++.+
T Consensus 58 aa~~L~~ag~d~i~~aCtsas~~~G~~~~~~~~~~l~~~~~iPv~~~-------------------------~~A~~~al 112 (240)
T 3ixl_A 58 HARRLQKQGAAVVSLMCTSLSFYRGAAFNAALTVAMREATGLPCTTM-------------------------STAVLNGL 112 (240)
T ss_dssp HHHHHHHTTEEEEEECCHHHHHTTCHHHHHHHHHHHHHHHSSCEEEH-------------------------HHHHHHHH
T ss_pred HHHHhccCCCCEEEECCcHHHHhcccchHHHHHHHHHhccCCCEECH-------------------------HHHHHHHH
Confidence 3445555589988876555443 33455556678999862 57888888
Q ss_pred HhcCCcEEEEEEEcCccccchHHHHHHHHhhcceEEEEEeecCCCC-----CCChhhHHHHHHH-H-hcCCceEEEEEeC
Q 002309 160 SYYGWNAVSVIFVDNEYGRNGVSALNDKLAERRCRISYKSGIPPES-----GVNTGYVMDLLVK-V-ALMESRVIVLHVS 232 (938)
Q Consensus 160 ~~~~w~~vaii~~d~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~-----~~~~~d~~~~l~~-l-k~~~~~viv~~~~ 232 (938)
++.|-++|+++.. |.....+.+++.+++.|++|.......... ..+...+...+++ + +..++|.|++.|.
T Consensus 113 ~~~g~~rvglltp---y~~~~~~~~~~~l~~~Giev~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~adaivL~CT 189 (240)
T 3ixl_A 113 RALGVRRVALATA---YIDDVNERLAAFLAEESLVPTGCRSLGITGVEAMARVDTATLVDLCVRAFEAAPDSDGILLSSG 189 (240)
T ss_dssp HHTTCSEEEEEES---SCHHHHHHHHHHHHHTTCEEEEEEECCCCCHHHHHTCCHHHHHHHHHHHHHTSTTCSEEEEECT
T ss_pred HHhCCCEEEEEeC---ChHHHHHHHHHHHHHCCCEEeccccCCCCCcchhhcCCHHHHHHHHHHHhhcCCCCCEEEEeCC
Confidence 9999999999974 666777888899999999987655433221 1235667778888 7 7788999999887
Q ss_pred hhhHHHHHHH
Q 002309 233 PSLGFQVFSV 242 (938)
Q Consensus 233 ~~~~~~~l~~ 242 (938)
.-....++..
T Consensus 190 ~l~~l~~i~~ 199 (240)
T 3ixl_A 190 GLLTLDAIPE 199 (240)
T ss_dssp TSCCTTHHHH
T ss_pred CCchhhhHHH
Confidence 6544444443
No 165
>4ddd_A Immunogenic protein; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, immune system; 1.90A {Ehrlichia chaffeensis}
Probab=95.72 E-value=0.025 Score=60.22 Aligned_cols=108 Identities=17% Similarity=0.152 Sum_probs=65.5
Q ss_pred CCCCChHHhhhCCCCeeEE-eCchHHH---HHHHhccccccc--ccccCCHHHHHHHHhcCCCCCceEEEEecch-----
Q 002309 688 SPINGIESLRKSDDPIGYQ-EGSFAEY---YLSQELNISKSR--LVALRTPEDYAKALKDGPGKGGVAAVVDERP----- 756 (938)
Q Consensus 688 ~~i~s~~dL~~~~~~i~~~-~~s~~~~---~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~g~~~a~i~~~~----- 756 (938)
.+|++++||. +++|++. .|+.... .+.+..++.... .+.+....+.+.++.. |++|+++....
T Consensus 136 s~i~sl~DL~--gk~v~~~~~Gs~~~~~~~~~l~~~Gi~~~~v~~v~~~g~~~a~~aL~~----G~vDa~~~~~~~p~~~ 209 (327)
T 4ddd_A 136 SNISVIDDIK--GKRVNIGSPGTGVRVAMLKLLGEKGWTKKDFSVMAELKSSEQAQALCD----NKIDVMVDVIGHPNAS 209 (327)
T ss_dssp SSCCSGGGGT--TSEEECCSTTSHHHHHHHHHHHHHTCCGGGCSEEECCCHHHHHHHHHT----TSCSBEEEEECSSCHH
T ss_pred CCCCCHHHhC--CCEEecCCCCccHHHHHHHHHHHcCCChHhcchhhcCCHHHHHHHHHc----CCCCEEEEccCCCcHH
Confidence 4789999998 7788884 4553322 222444544333 3567888999999999 89999887542
Q ss_pred hHHHHHhc------------------CCcEEE--eC-ccc--------cccceEeeecCCCc--chhhHHHHHHhh
Q 002309 757 YVELFLSS------------------QCSFRI--VG-QEF--------TKSGWGFAFPRDSP--LAVDLSSAILEL 801 (938)
Q Consensus 757 ~~~~~~~~------------------~~~l~~--~~-~~~--------~~~~~~~~~~k~sp--l~~~i~~~il~l 801 (938)
...+.... ...+.. ++ ..+ ....++++.|++-| ....+++++.+-
T Consensus 210 ~~~~~~~g~lr~L~v~~~~r~~~~p~~Pt~~~~~ip~g~~~~~~dv~t~~~~~~l~ap~~~p~~vv~~l~~a~~e~ 285 (327)
T 4ddd_A 210 IQEASATCDIKFIPLDDRLIDDLHAKYPYYQKDIISGGLYNDSPDIQTVSVKASLVTTTELSNDLAYKIVKSIATH 285 (327)
T ss_dssp HHHHHHHSCEEECCCCHHHHHHHHHHCTTCEEEEECSCSSSSCCCEEEEEEEEEEEEETTSCHHHHHHHHHHHHHT
T ss_pred HHHHHhcCCeEEEeCCHHHHHHHHHhCCCceEEEeCCCCCCCCCCcceeeeeeEEEEcCCCCHHHHHHHHHHHHhC
Confidence 23332221 111211 11 111 11246788899977 888888888753
No 166
>3jv9_A OXYR, transcriptional regulator, LYSR family; LYSR-type transcriptional regulator, LTTR, redox, structural genomics, OPPF; 2.39A {Neisseria meningitidis}
Probab=95.60 E-value=0.2 Score=49.07 Aligned_cols=194 Identities=13% Similarity=0.102 Sum_probs=116.8
Q ss_pred ceeEEEecccccccceeeeccCCcceEeeeHHHHHHHHHhCCCCccEEEEecCCCCCCCChhHHHHhhhcceecEEeccE
Q 002309 465 KLLKIGVPNRASYREFVSKVRGSDMFQGFCIDVFTAAVNLLPYAVPYQFVAFGDGHKNPSYTQLVDSITTGVFDAVVGDI 544 (938)
Q Consensus 465 ~~lrv~~~~~~~~~~~~~~~~~~~~~~G~~~dll~~la~~l~f~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~D~~~~~~ 544 (938)
++||||+... -...+-.+++..+.+..+ ++++.+.. +....+..+|.+|++|+++...
T Consensus 4 g~l~Ig~~~~--------------~~~~~l~~~l~~~~~~~P-~i~i~i~~-------~~~~~~~~~l~~g~~Dl~i~~~ 61 (219)
T 3jv9_A 4 GAFKLGLIFT--------------VAPYLLPKLIVSLRRTAP-KMPLMLEE-------NYTHTLTESLKRGDVDAIIVAE 61 (219)
T ss_dssp CCEEEEEETT--------------THHHHHHHHHHHHHHHST-TCCEEEEE-------ECHHHHHHHHHHTSSSEEEEES
T ss_pred CcEEEEEcch--------------hhHHHHHHHHHHHHHHCC-CcEEEEEe-------CCcHHHHHHHHcCCCCEEEEcC
Confidence 4688888741 112345677888888774 24566654 4578999999999999998643
Q ss_pred eeecCceeeeeeccceecccEEEEEeccCCCCCcceeeccCchhhHHHHHHHHHHHHhhhheeecccCCCCCCCccccch
Q 002309 545 TIVTNRTKIVDFSQPYAASGLVVVVPFRKLNTGAWAFLRPFSPLMWTVTACFFVVVGIVVWILEHRINDEFRGPPKRQVI 624 (938)
Q Consensus 545 ~~t~~r~~~v~fs~p~~~~~~~~lv~~~~~~~~~~~~l~PF~~~vW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 624 (938)
... ...+. ..++....+++++++..+..
T Consensus 62 ~~~---~~~~~-~~~l~~~~~~~v~~~~~pl~------------------------------------------------ 89 (219)
T 3jv9_A 62 PFQ---EPGIV-TEPLYDEPFFVIVPKGHSFE------------------------------------------------ 89 (219)
T ss_dssp SCC---CTTEE-EEEEEEEEEEEEEETTCGGG------------------------------------------------
T ss_pred CCC---CCCee-EEEeeeceEEEEEeCCCCcc------------------------------------------------
Confidence 222 22222 35677788888887654110
Q ss_pred hhhhHHHHHHHhhhhhhhhhhcccCccccchhHHHHHHHHHHHHHHhhhhhhhhhhhhcccccCCCCChHHhhhCCCCee
Q 002309 625 TILWFSLSTLFFAHIAIFVILAEENTVSTLGRLVLIIWLFVVLIINSSYTASLTSILTVQQLYSPINGIESLRKSDDPIG 704 (938)
Q Consensus 625 ~~~~~~~~~l~~~~~~~~~~~~~~~p~s~s~R~~~~~w~~~~lil~s~Yta~L~s~Lt~~~~~~~i~s~~dL~~~~~~i~ 704 (938)
....-+++||. +.++.
T Consensus 90 --------------------------------------------------------------~~~~~~~~~L~--~~~~i 105 (219)
T 3jv9_A 90 --------------------------------------------------------------ELDAVSPRMLG--EEQVL 105 (219)
T ss_dssp --------------------------------------------------------------TSSSCCSSTTS--SSCEE
T ss_pred --------------------------------------------------------------cCCCCCHHHhc--CCcEE
Confidence 02234677887 55543
Q ss_pred -EEeCchHHHHHHHhccc--------ccccccccCCHHHHHHHHhcCCCCCceEEEEecchhHHHHHhcCCcEEEeCc--
Q 002309 705 -YQEGSFAEYYLSQELNI--------SKSRLVALRTPEDYAKALKDGPGKGGVAAVVDERPYVELFLSSQCSFRIVGQ-- 773 (938)
Q Consensus 705 -~~~~s~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~l~~~~~~g~~~a~i~~~~~~~~~~~~~~~l~~~~~-- 773 (938)
...+......+.+.... ........++.+...+.+.. |...+++-+..... + +..++..+..
T Consensus 106 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~v~~----g~gi~~~p~~~~~~-~--~~~~l~~~~~~~ 178 (219)
T 3jv9_A 106 LLTEGNCMRDQVLSSCSELAAKQRIQGLTNTLQGSSINTIRHMVAS----GLAISVLPATALTE-N--DHMLFSIIPFEG 178 (219)
T ss_dssp EECTTCHHHHHHHHHCSTTHHHHHHHTTTSSCEESSHHHHHHHHHH----TSCEEEEEGGGCCT-T--CTTTEEEECCSS
T ss_pred EecCCccHHHHHHHHHHhhhhhhccCCCCceEEeCCHHHHHHHHHc----CCcEEehhHHHHHh-c--cCCcEEEEecCC
Confidence 34444444444333221 22334457889999999999 66667776655443 2 3345655543
Q ss_pred cccccceEeeecCCCcchhhHHHHHHhhhc
Q 002309 774 EFTKSGWGFAFPRDSPLAVDLSSAILELAE 803 (938)
Q Consensus 774 ~~~~~~~~~~~~k~spl~~~i~~~il~l~e 803 (938)
......++++.+++......+...+..+++
T Consensus 179 ~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~ 208 (219)
T 3jv9_A 179 TPPSRRVVLAYRRNFVRPKALSAMKAAIMQ 208 (219)
T ss_dssp SCCEEEEEEEEETTCSCHHHHHHHHHHHHT
T ss_pred CCcceeEEEEEecCccccHHHHHHHHHHHh
Confidence 333446788888887766665555554443
No 167
>4ab5_A Transcriptional regulator, LYSR family; transcription factors; 2.51A {Neisseria meningitidis serogroup B} PDB: 4ab6_A
Probab=95.53 E-value=0.15 Score=50.21 Aligned_cols=84 Identities=14% Similarity=0.073 Sum_probs=55.7
Q ss_pred CceeEEEecccccccceeeeccCCcceEeeeHHHHHHHHHhCCCCccEEEEecCCCCCCCChhHHHHhhhcceecEEecc
Q 002309 464 GKLLKIGVPNRASYREFVSKVRGSDMFQGFCIDVFTAAVNLLPYAVPYQFVAFGDGHKNPSYTQLVDSITTGVFDAVVGD 543 (938)
Q Consensus 464 g~~lrv~~~~~~~~~~~~~~~~~~~~~~G~~~dll~~la~~l~f~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~D~~~~~ 543 (938)
..+||||+... . ...+-.+++..+.++.+ .+++.+.. ++...++.+|.+|++|+++..
T Consensus 7 ~g~l~Ig~~~~--~------------~~~~l~~~l~~f~~~~P-~i~i~i~~-------~~~~~~~~~l~~g~~Di~i~~ 64 (222)
T 4ab5_A 7 AGELRIAVECH--T------------CFDWLMPAMGEFRPMWP-QVELDIVS-------GFQADPVGLLLQHRADLAIVS 64 (222)
T ss_dssp TEEEEEECCCT--T------------THHHHHHHHHHHHHHST-TEEEEEEC-------CCCSCTHHHHHTTSCSEEEES
T ss_pred cceEEEEEehH--H------------HHHHHHHHHHHHHHHCC-CcEEEEec-------CCHHHHHHHHHcCCcCEEEec
Confidence 35789888841 1 12345678888888875 25566654 456789999999999999864
Q ss_pred EeeecCceeeeeeccceecccEEEEEeccC
Q 002309 544 ITIVTNRTKIVDFSQPYAASGLVVVVPFRK 573 (938)
Q Consensus 544 ~~~t~~r~~~v~fs~p~~~~~~~~lv~~~~ 573 (938)
..... ..+. ..++....+++++++..
T Consensus 65 ~~~~~---~~~~-~~~l~~~~~~~v~~~~~ 90 (222)
T 4ab5_A 65 EAEKQ---NGIS-FQPLFAYEMVGICAPDH 90 (222)
T ss_dssp CCCCC---TTEE-EEEEEEEEEEEEECTTS
T ss_pred CCCCc---CCeE-EEEeecCcEEEEecCCC
Confidence 33222 2222 35677788888887654
No 168
>2x7q_A Ca3427, possible thiamine biosynthesis enzyme; unknown function; 2.00A {Candida albicans} PDB: 2x7p_A
Probab=95.50 E-value=0.041 Score=58.54 Aligned_cols=108 Identities=17% Similarity=0.229 Sum_probs=61.6
Q ss_pred CCCCChHHhhhCCCCeeEEe-CchHHH---HHHHhccccc-ccccccCCHHHHHHHHhcCCCCC----ceEEEEecchhH
Q 002309 688 SPINGIESLRKSDDPIGYQE-GSFAEY---YLSQELNISK-SRLVALRTPEDYAKALKDGPGKG----GVAAVVDERPYV 758 (938)
Q Consensus 688 ~~i~s~~dL~~~~~~i~~~~-~s~~~~---~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~g----~~~a~i~~~~~~ 758 (938)
++|++++|| ++|++.. |+.... .+.+..+++. .+++.+.+..+...++.+ | ++||++.+....
T Consensus 110 ~~i~s~~DL----K~i~~~~~gs~~~~~~~~l~~~~Gl~~dv~~v~~~~~~~~~~al~~----G~~~~~vDa~~~ep~~~ 181 (321)
T 2x7q_A 110 DDVTDAKQL----KRIGVSRIGSGSYVMSFVLAHQLGVPSFDQFQVLSNFKNLRDSVNL----KDGVEGSDAFMWEYFTS 181 (321)
T ss_dssp TTCSSGGGC----CEEEESSTTSHHHHHHHHHHHHHTSCCCCEEEECCSHHHHHHHHTT----CTTSCCCSEEEEEHHHH
T ss_pred CCCCChHHc----ceEEeeCCCcHHHHHHHHHHHhcCCCcceEEEEcCChHHHHHHHHc----CCCccceEEEEecCccc
Confidence 378999999 5799876 554332 2222334432 345566778889999998 8 899987654433
Q ss_pred HHHHhcCCcEEEeCccccccc-eEeeecCC----Cc-----chhhHHHHHHhhhcc
Q 002309 759 ELFLSSQCSFRIVGQEFTKSG-WGFAFPRD----SP-----LAVDLSSAILELAEN 804 (938)
Q Consensus 759 ~~~~~~~~~l~~~~~~~~~~~-~~~~~~k~----sp-----l~~~i~~~il~l~e~ 804 (938)
..... ...+..+.+...+.+ .+++++++ .| +...+.+++..+.++
T Consensus 182 ~~~~~-~g~~~~~~d~~~~~~~~~l~~~~~~~~~~p~~v~~~~~a~~~a~~~~~~~ 236 (321)
T 2x7q_A 182 KKYYD-NHEIKQIDQIYTPWSSWVVATSSDSLQAKSDVIKNFIDAVNQGIQYYNEH 236 (321)
T ss_dssp HHHHH-TTSEEEEEEEECSSCSEEEEEEHHHHHHSHHHHHHHHHHHHHHHHHHHHC
T ss_pred hhhcc-CCceEEccccCCCCceEEEEEcHHHHhhCHHHHHHHHHHHHHHHHHHHHC
Confidence 33322 334554443322222 36666654 23 444455555555544
No 169
>3ho7_A OXYR; beta-alpha-barrels, DNA-binding, transcription, transcriptio regulation; 1.58A {Porphyromonas gingivalis}
Probab=95.45 E-value=0.12 Score=51.29 Aligned_cols=84 Identities=13% Similarity=0.047 Sum_probs=57.6
Q ss_pred CceeEEEecccccccceeeeccCCcceEeeeHHHHHHHHHhCCCCccEEEEecCCCCCCCChhHHHHhhhcceecEEecc
Q 002309 464 GKLLKIGVPNRASYREFVSKVRGSDMFQGFCIDVFTAAVNLLPYAVPYQFVAFGDGHKNPSYTQLVDSITTGVFDAVVGD 543 (938)
Q Consensus 464 g~~lrv~~~~~~~~~~~~~~~~~~~~~~G~~~dll~~la~~l~f~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~D~~~~~ 543 (938)
.++||||+... -...+..+++..+.+..+ .+++.+.. ++...++.+|.+|++|+++..
T Consensus 10 ~g~l~Ig~~~~--------------~~~~~l~~~l~~~~~~~P-~v~i~~~~-------~~~~~~~~~l~~g~~Dl~i~~ 67 (232)
T 3ho7_A 10 TGRLNIAVLPT--------------IAPYLLPRVFPIWKKELA-GLEIHVSE-------MQTSRCLASLLSGEIDMAIIA 67 (232)
T ss_dssp CEEEEEEECTT--------------THHHHHHHHHHHHHHHST-TEEEEEEE-------CCHHHHHHHHHHTSCSEEEES
T ss_pred ceeEEEEeccc--------------cchhhhHHHHHHHHHHCC-CcEEEEEe-------CCHHHHHHHHHcCCCCEEEEc
Confidence 35789888851 112356778888888876 35666665 568899999999999999865
Q ss_pred EeeecCceeeeeeccceecccEEEEEeccC
Q 002309 544 ITIVTNRTKIVDFSQPYAASGLVVVVPFRK 573 (938)
Q Consensus 544 ~~~t~~r~~~v~fs~p~~~~~~~~lv~~~~ 573 (938)
..... ..+. +.++....+++++++..
T Consensus 68 ~~~~~---~~l~-~~~l~~~~~~~v~~~~h 93 (232)
T 3ho7_A 68 SKAET---EGLE-DDLLYYEEFLGYVSRCE 93 (232)
T ss_dssp SCCCC---TTEE-EEEEEEEEEEEEECTTS
T ss_pred CCCCC---CCeE-EEEecccCEEEEEcCCC
Confidence 43322 2222 35777788888887654
No 170
>3ldc_A Calcium-gated potassium channel MTHK; transmembrane, ION channel, open conformation, IO transport; 1.45A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3lde_A 4hyo_A 4hz3_D 3r65_A 3ous_A 3ldd_A
Probab=95.32 E-value=0.031 Score=45.46 Aligned_cols=54 Identities=11% Similarity=0.106 Sum_probs=49.4
Q ss_pred cchhhhhHHHHHHHhhhhhhhhhhcccCccccchhHHHHHHHHHHHHHHhhhhhhhhhhh
Q 002309 622 QVITILWFSLSTLFFAHIAIFVILAEENTVSTLGRLVLIIWLFVVLIINSSYTASLTSIL 681 (938)
Q Consensus 622 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~p~s~s~R~~~~~w~~~~lil~s~Yta~L~s~L 681 (938)
++.+++||++.++..-| +++..|.+..+|++.+.|.++++.+.+...+++++.+
T Consensus 28 ~~~~a~yf~~~T~tTvG------yGdi~P~t~~~r~~~~~~~~~G~~~~~~~~~~i~~~l 81 (82)
T 3ldc_A 28 SWTVSLYWTFVTIATVG------YGDYSPHTPLGMYFTCTLIVLGIGTFAVAVERLLEFL 81 (82)
T ss_dssp CHHHHHHHHHHHHTTCC------CCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHhcccC------CCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 68899999999998887 6688999999999999999999999999999998875
No 171
>3ouf_A Potassium channel protein; ION channel, membrane, membrane protein; 1.55A {Bacillus cereus} PDB: 3t4z_A 3tcu_A 3t1c_A 3tet_A 3t4d_A 3t2m_A 3e86_A 3e83_A 3e89_A 3e8b_A 3e8f_A 3e8g_A 3e8h_A 3k0d_A 3k0g_A 3k06_A 3k08_A 3k04_A 3k03_A
Probab=95.31 E-value=0.02 Score=48.29 Aligned_cols=62 Identities=18% Similarity=0.340 Sum_probs=55.1
Q ss_pred ccchhhhhHHHHHHHhhhhhhhhhhcccCccccchhHHHHHHHHHHHHHHhhhhhhhhhhhhcccccC
Q 002309 621 RQVITILWFSLSTLFFAHIAIFVILAEENTVSTLGRLVLIIWLFVVLIINSSYTASLTSILTVQQLYS 688 (938)
Q Consensus 621 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~p~s~s~R~~~~~w~~~~lil~s~Yta~L~s~Lt~~~~~~ 688 (938)
.++.+++||++.++..-| +++..|.+..+|++.++|.++++.+.+...+++++.++.++...
T Consensus 31 ~~~~~a~yf~~~T~tTvG------yGdi~P~t~~gr~~~~~~~~~G~~~~~~~i~~i~~~~~~~~~~~ 92 (97)
T 3ouf_A 31 LRPIDALYFSVVTLTTVG------YGDFSPQTDFGKIFTILYIFIGIGLVFGFIHKLAVNVQLPSILS 92 (97)
T ss_dssp CCHHHHHHHHHHHHTTCC------CCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHH
T ss_pred CCHHHHHHHHHHHHHccC------CCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 368899999999998887 66889999999999999999999999999999999998766543
No 172
>3pjs_K KCSA, voltage-gated potassium channel; ION channel, conducts K+ IONS, cell membrane, transport PROT; 3.80A {Streptomyces lividans} PDB: 1f6g_A
Probab=95.18 E-value=0.0023 Score=60.53 Aligned_cols=61 Identities=21% Similarity=0.229 Sum_probs=54.2
Q ss_pred CccccchhhhhHHHHHHHhhhhhhhhhhcccCccccchhHHHHHHHHHHHHHHhhhhhhhhhhhhcc
Q 002309 618 PPKRQVITILWFSLSTLFFAHIAIFVILAEENTVSTLGRLVLIIWLFVVLIINSSYTASLTSILTVQ 684 (938)
Q Consensus 618 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~p~s~s~R~~~~~w~~~~lil~s~Yta~L~s~Lt~~ 684 (938)
+...++.+++||++.++..-| +++..|.+..+|++.++|.++++++.+..++.+++.++..
T Consensus 63 ~~~~~~~~a~yf~~~T~tTvG------yGDi~P~t~~~r~~~~~~~l~G~~~~~~~~~~i~~~~~~~ 123 (166)
T 3pjs_K 63 AQLITYPRALWWSVETATTVG------YGDLYPVTLWGRLVAVVVMVAGITSFGLVTAALATWFVGQ 123 (166)
T ss_dssp CCCCSTTTTTTTTHHHHSCCC------CSSSCCCSSTTTTTTHHHHHHHHHHHHHHHTTSSSSSSSS
T ss_pred cccCCHHHHHHHHHHHhcccc------CCCCCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334578899999999998877 6788999999999999999999999999999999998753
No 173
>3oxn_A Putative transcriptional regulator, LYSR family; structural genomics, PSI-2, protein structure initiative; 2.70A {Vibrio parahaemolyticus}
Probab=95.10 E-value=0.43 Score=47.65 Aligned_cols=84 Identities=14% Similarity=0.176 Sum_probs=57.4
Q ss_pred CceeEEEecccccccceeeeccCCcceEeeeHHHHHHHHHhCCCCccEEEEecCCCCCCCChhHHHHhhhcceecEEecc
Q 002309 464 GKLLKIGVPNRASYREFVSKVRGSDMFQGFCIDVFTAAVNLLPYAVPYQFVAFGDGHKNPSYTQLVDSITTGVFDAVVGD 543 (938)
Q Consensus 464 g~~lrv~~~~~~~~~~~~~~~~~~~~~~G~~~dll~~la~~l~f~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~D~~~~~ 543 (938)
.+.||||+... -...+-..++..+.++.+ .+++.+.. .+...++.+|.+|++|+++..
T Consensus 18 ~g~l~Ig~~~~--------------~~~~~l~~~l~~f~~~~P-~i~l~~~~-------~~~~~~~~~l~~g~~Dl~i~~ 75 (241)
T 3oxn_A 18 DQTFTIATTDY--------------AMQTILPFALPRIYQEAP-NVSFNFLP-------LQHDRLSDQLTYEGADLAICR 75 (241)
T ss_dssp CCEEEEEECSH--------------HHHHTHHHHHHHHHHHCT-TCEEEEEE-------CCGGGHHHHHHTSCCSEEEEC
T ss_pred CceEEEEechH--------------HHHHHHHHHHHHHHHHCC-CCEEEEEE-------CCcccHHHHHHcCCCCEEEec
Confidence 45799998851 122456678888888875 25566665 557899999999999999864
Q ss_pred EeeecCceeeeeeccceecccEEEEEeccC
Q 002309 544 ITIVTNRTKIVDFSQPYAASGLVVVVPFRK 573 (938)
Q Consensus 544 ~~~t~~r~~~v~fs~p~~~~~~~~lv~~~~ 573 (938)
.. .....+. +.++....+++++++..
T Consensus 76 ~~---~~~~~~~-~~~l~~~~~~~v~~~~h 101 (241)
T 3oxn_A 76 PT---GPVEPLR-SEILGRVGVLCLLSKQH 101 (241)
T ss_dssp CS---SCCTTEE-EEEEECCCEEEEEETTS
T ss_pred CC---CCCccce-eEEeecccEEEEEeCCC
Confidence 32 2222232 35677788888887655
No 174
>2q67_A Potassium channel protein; inverted teepee, helix bundle, tetramer, central cavity, ION metal transport, membrane protein; 2.30A {Bacillus cereus} PDB: 2q68_A 2q6a_A 2q69_A 2ahy_A 2ahz_A
Probab=94.73 E-value=0.045 Score=47.79 Aligned_cols=57 Identities=18% Similarity=0.335 Sum_probs=51.2
Q ss_pred cchhhhhHHHHHHHhhhhhhhhhhcccCccccchhHHHHHHHHHHHHHHhhhhhhhhhhhhcc
Q 002309 622 QVITILWFSLSTLFFAHIAIFVILAEENTVSTLGRLVLIIWLFVVLIINSSYTASLTSILTVQ 684 (938)
Q Consensus 622 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~p~s~s~R~~~~~w~~~~lil~s~Yta~L~s~Lt~~ 684 (938)
++.+++||++.++..-| +++..|.+..+|++.++|.++++.+.+...+++.+.++..
T Consensus 49 ~~~~a~y~~~~T~tTvG------yGdi~P~t~~gr~~~~~~~~~G~~~~~~~~~~l~~~~~~~ 105 (114)
T 2q67_A 49 RPIDALYFSVVTLTTVG------AGNFSPQTDFGKIFTILYIFIGIGLVFGFIHKLAVNVQLP 105 (114)
T ss_dssp CHHHHHHHHHHHHTSCC------CSSCCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-
T ss_pred CHHHHHHHHHHHhccee------CCCCccCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67899999999998887 6688899999999999999999999999999999988554
No 175
>1p7b_A Integral membrane channel and cytosolic domains; transmembrane helices, ION conduction, immunoglobulin fold, assembly; 3.65A {Burkholderia pseudomallei} SCOP: b.1.18.16 f.14.1.1 PDB: 2wll_B* 2wll_A*
Probab=94.52 E-value=0.05 Score=57.21 Aligned_cols=62 Identities=11% Similarity=0.107 Sum_probs=55.1
Q ss_pred ccccchhhhhHHHHHHHhhhhhhhhhhcccCccccchhHHHHHHHHHHHHHHhhhhhhhhhhhhcccc
Q 002309 619 PKRQVITILWFSLSTLFFAHIAIFVILAEENTVSTLGRLVLIIWLFVVLIINSSYTASLTSILTVQQL 686 (938)
Q Consensus 619 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~p~s~s~R~~~~~w~~~~lil~s~Yta~L~s~Lt~~~~ 686 (938)
...++..++||++.++..-| +++..|.+..+|++.++|.++++++.+.-++.+++.++.+..
T Consensus 93 ~~~s~~~a~yfs~vT~tTVG------YGDi~P~t~~gr~~~~~~~l~G~~~~a~~ig~i~~~~~~~~~ 154 (333)
T 1p7b_A 93 SPPGFVGAFFFSVETLATVG------YGDMHPQTVYAHAIATLEIFVGMSGIALSTGLVFARFARPRA 154 (333)
T ss_dssp SSSSTHHHHHHHTTTTTTCC------CSCCCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCC
T ss_pred CCCcHHHhHhhhheeeeecC------CCCCcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34578999999999998877 668889999999999999999999999999999999987653
No 176
>4gx0_A TRKA domain protein; membrane protein, ION channel, ADP binding, NAD binding, MEM transport protein; HET: MAL GLC; 2.60A {Geobacter sulfurreducens} PDB: 4gx1_A* 4gx2_A* 4gx5_A 4gvl_A*
Probab=94.43 E-value=0.094 Score=60.60 Aligned_cols=127 Identities=12% Similarity=0.055 Sum_probs=79.2
Q ss_pred ccchhhhhHHHHHHHhhhhhhhhhhcccCccccchhHHHHHHHHHHHHHHhhhhhh-hhhhhhcccccCCCC-----ChH
Q 002309 621 RQVITILWFSLSTLFFAHIAIFVILAEENTVSTLGRLVLIIWLFVVLIINSSYTAS-LTSILTVQQLYSPIN-----GIE 694 (938)
Q Consensus 621 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~p~s~s~R~~~~~w~~~~lil~s~Yta~-L~s~Lt~~~~~~~i~-----s~~ 694 (938)
.++..++||++.++..-| +++..|.+..+|++.++|.++++.+.+...+. ++++++.+.++.... ...
T Consensus 50 ~~~~~~~y~~~~t~tTvG------ygd~~p~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 123 (565)
T 4gx0_A 50 YSFMAGIYWTITVMTTLG------FGDITFESDAGYLFASIVTVSGVIFLDIILPFGFVSMFLAPWIERRLRYHPTIELP 123 (565)
T ss_dssp CCHHHHHHHHHHHHTTCC------CCSSCCCSHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHTSCCCBCCCC
T ss_pred Cchhhhhheeeeeeeeec------CCCcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccc
Confidence 378999999999998888 66778999999999999999999998888877 666654433322111 111
Q ss_pred HhhhCCCCeeEEeCchHHHHHHHhcccccccccccCCHHHHHHHHhcCCCCC-ceEEEEecchhHH
Q 002309 695 SLRKSDDPIGYQEGSFAEYYLSQELNISKSRLVALRTPEDYAKALKDGPGKG-GVAAVVDERPYVE 759 (938)
Q Consensus 695 dL~~~~~~i~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g-~~~a~i~~~~~~~ 759 (938)
+.. ...+.+...+..-..+.+.+......++.++...+..+.+.+ . +..++..|....+
T Consensus 124 ~~~--~~hviI~G~g~~g~~la~~L~~~~~~vvvid~~~~~~~~~~~----~~~~~~i~Gd~~~~~ 183 (565)
T 4gx0_A 124 DDT--RGHILIFGIDPITRTLIRKLESRNHLFVVVTDNYDQALHLEE----QEGFKVVYGSPTDAH 183 (565)
T ss_dssp TTC--CSCEEEESCCHHHHHHHHHTTTTTCCEEEEESCHHHHHHHHH----SCSSEEEESCTTCHH
T ss_pred ccc--CCeEEEECCChHHHHHHHHHHHCCCCEEEEECCHHHHHHHHH----hcCCeEEEeCCCCHH
Confidence 111 233444443323333323333233345555666666666666 4 5667777654433
No 177
>1xl4_A Inward rectifier potassium channel; integral membrane protein, ION channel, inwardly rectifying channel, metal transport; 2.60A {Magnetospirillum magnetotacticum} SCOP: b.1.18.16 f.14.1.1 PDB: 1xl6_A* 2wlh_A 2wli_B 2wlj_A* 2wlk_A* 2wlm_A 2wlo_A 2wln_A 3zrs_A 2wli_A 2x6c_A* 2x6b_A* 2x6a_A*
Probab=94.05 E-value=0.078 Score=55.05 Aligned_cols=63 Identities=8% Similarity=0.067 Sum_probs=55.1
Q ss_pred CCccccchhhhhHHHHHHHhhhhhhhhhhcccCccccchhHHHHHHHHHHHHHHhhhhhhhhhhhhccc
Q 002309 617 GPPKRQVITILWFSLSTLFFAHIAIFVILAEENTVSTLGRLVLIIWLFVVLIINSSYTASLTSILTVQQ 685 (938)
Q Consensus 617 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~p~s~s~R~~~~~w~~~~lil~s~Yta~L~s~Lt~~~ 685 (938)
+....++..++||++.++..-| +++..|.+..+|++.+++.++++++.+..++.+++.++.+.
T Consensus 77 ~~~~~s~~~a~yfs~vT~tTvG------YGDi~P~t~~gr~~~~~~~l~G~~~~a~~~g~v~~~~~~~~ 139 (301)
T 1xl4_A 77 NARPGSFTDAFFFSVQTMATIG------YGKLIPIGPLANTLVTLEALCGMLGLAVAASLIYARFTRPT 139 (301)
T ss_dssp TSCTTCHHHHHHHHHHHHTTCC------CSSSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCC
T ss_pred CCCcCCHHHHHHHhhhheeccC------CCCCcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 3345678999999999998877 56788999999999999999999999999999999997653
No 178
>2g29_A Nitrate transport protein NRTA; solute-binding protein, alpha-beta protein; 1.50A {Synechocystis SP}
Probab=94.03 E-value=0.17 Score=55.95 Aligned_cols=103 Identities=12% Similarity=0.193 Sum_probs=61.6
Q ss_pred HHhhhCCCCeeEE-eCchHHHHHH---Hhccccc---ccccccCCHHHHHHHHhcCCCCCceEEEEecchhHHHHHhcCC
Q 002309 694 ESLRKSDDPIGYQ-EGSFAEYYLS---QELNISK---SRLVALRTPEDYAKALKDGPGKGGVAAVVDERPYVELFLSSQC 766 (938)
Q Consensus 694 ~dL~~~~~~i~~~-~~s~~~~~~~---~~~~~~~---~~~~~~~~~~~~~~~l~~~~~~g~~~a~i~~~~~~~~~~~~~~ 766 (938)
+||. |++|++. .++....++. +..++.. .+++.+ .+.+...++.+ |++||++...++......+..
T Consensus 151 ~dLk--Gk~iav~~~gs~~~~~l~~~L~~~Gl~~~~dv~~v~~-~~~~~~~aL~~----G~vDa~~~~eP~~~~~~~~g~ 223 (417)
T 2g29_A 151 AKVT--DPKVAMTFPGGTHDMWIRYWLAAGGMEPGKDFSTIVV-PPAQMVANVKV----NAMESFCVGEPWPLQTVNQGV 223 (417)
T ss_dssp HTSS--SCEEEESSTTSHHHHHHHHHHHHTTCCBTTTBEEEEC-CGGGHHHHHHT----TSCSEEEEETTHHHHHHHHTS
T ss_pred HhcC--CCEEEEeCCCCHHHHHHHHHHHHcCCCCCCceEEEEC-CHHHHHHHHHc----CCCCEEEeCCCHHHHHHHcCC
Confidence 7787 8899997 4664433332 2334432 244455 45788999999 899999988887766555543
Q ss_pred -cEEE-eCccccccc-eEeeecCC----Cc-----chhhHHHHHHhhhc
Q 002309 767 -SFRI-VGQEFTKSG-WGFAFPRD----SP-----LAVDLSSAILELAE 803 (938)
Q Consensus 767 -~l~~-~~~~~~~~~-~~~~~~k~----sp-----l~~~i~~~il~l~e 803 (938)
.... ..+.....+ .+++++++ .| +...+.++..++.+
T Consensus 224 ~~~~~~~~~~~~~~p~~~l~~~~~~~~~~p~~~~~~~~A~~~A~~~~~~ 272 (417)
T 2g29_A 224 GYQALTTGQLWKDHPEKAFGMRADWVDQNPKAAKALLMAVMEAQQWCDQ 272 (417)
T ss_dssp CEEEEEGGGTBTTCBCEEEEEEHHHHHHCHHHHHHHHHHHHHHHHHHHC
T ss_pred CEEEEechhhcCCCceEEEEECHHHHHHCHHHHHHHHHHHHHHHHHHhC
Confidence 2222 223222222 46777754 34 44556666666765
No 179
>1us5_A Putative GLUR0 ligand binding core; receptor, membrane protein, glutamate receptor, L-glutamate; HET: GLU; 1.5A {Thermus thermophilus} SCOP: c.94.1.1 PDB: 1us4_A*
Probab=93.77 E-value=0.53 Score=49.46 Aligned_cols=62 Identities=13% Similarity=0.103 Sum_probs=40.3
Q ss_pred CCCCChHHhhhCCCCeeE-EeCchHHHHH---HHhcccccccc--cccCCHHHHHHHHhcCCCCCceEEEEecc
Q 002309 688 SPINGIESLRKSDDPIGY-QEGSFAEYYL---SQELNISKSRL--VALRTPEDYAKALKDGPGKGGVAAVVDER 755 (938)
Q Consensus 688 ~~i~s~~dL~~~~~~i~~-~~~s~~~~~~---~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~~g~~~a~i~~~ 755 (938)
.++++++||. ++++++ ..|+.....+ .+..+.....+ ..+.+..+.+.++.. |++|+.+...
T Consensus 121 ~~i~sl~dL~--g~~i~~~~~gs~~~~~~~~~l~~~G~~~~~v~~~~~~~~~~~~~al~~----G~vda~~~~~ 188 (314)
T 1us5_A 121 AGIRTVADLK--GKRVVVGDVGSGTEQNARQILEAYGLTFDDLGQAIRVSASQGIQLMQD----KRADALFYTV 188 (314)
T ss_dssp SSCSSGGGGT--TSEEECCCTTCHHHHHHHHHHHHTTCCGGGSSEEECCCHHHHHHHHHT----TSCSEEEEEE
T ss_pred CCCCcHHHhC--CCEeecCCCCchHHHHHHHHHHHcCCCHHHcCceecCCHHHHHHHHHc----CCccEEEEcc
Confidence 4678999998 777877 4455433322 13344443322 245677888999998 8899888653
No 180
>3fzv_A Probable transcriptional regulator; LYSR, structural genomics, PSI-2, structure initiative; 2.71A {Pseudomonas aeruginosa PA01}
Probab=93.52 E-value=0.65 Score=48.30 Aligned_cols=84 Identities=14% Similarity=0.169 Sum_probs=53.8
Q ss_pred CceeEEEecccccccceeeeccCCcceEeeeHHHHHHHHHhCCCCccEEEEecCCCCCCCChhHHHHhhhcceecEEecc
Q 002309 464 GKLLKIGVPNRASYREFVSKVRGSDMFQGFCIDVFTAAVNLLPYAVPYQFVAFGDGHKNPSYTQLVDSITTGVFDAVVGD 543 (938)
Q Consensus 464 g~~lrv~~~~~~~~~~~~~~~~~~~~~~G~~~dll~~la~~l~f~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~D~~~~~ 543 (938)
.++||||+... + ...+..+++..+.++.+ .+++.+.. ++...++.+|.+|++|+++..
T Consensus 94 ~g~l~i~~~~~--~------------~~~~l~~~l~~f~~~~P-~i~i~l~~-------~~~~~~~~~l~~g~~Dl~i~~ 151 (306)
T 3fzv_A 94 AGQIDIGCFET--V------------APLYLPGLIAGFRQAYP-GVEIRIRD-------GEQQELVQGLTSGRFDLAFLY 151 (306)
T ss_dssp CEEEEEEEEGG--G------------HHHHHHHHHHHHHHHCT-TEEEEEEE-------ECHHHHHHHHHHTSCSEEEEC
T ss_pred CceEEEEechh--h------------hHHHHHHHHHHHHHHCC-CeEEEEEe-------CCHHHHHHHHHCCCccEEEEe
Confidence 35799999851 1 12455678888888875 25566655 458899999999999998753
Q ss_pred EeeecCceeeeeecccee-cccEEEEEeccC
Q 002309 544 ITIVTNRTKIVDFSQPYA-ASGLVVVVPFRK 573 (938)
Q Consensus 544 ~~~t~~r~~~v~fs~p~~-~~~~~~lv~~~~ 573 (938)
... ....+. ..|+. ....+++++...
T Consensus 152 ~~~---~~~~l~-~~~l~~~~~~~~v~~~~~ 178 (306)
T 3fzv_A 152 EHD---LDSTIE-TEPLMPPQRPHALLPEGH 178 (306)
T ss_dssp SSS---CCTTEE-EEESSCCBCCEEEEETTC
T ss_pred ccc---cccccc-eeeeeeccccEEEecCCC
Confidence 221 112222 23455 666677776554
No 181
>3vou_A ION transport 2 domain protein, voltage-gated SOD channel; 4-helical bundle, ION channel, membrane, transport protein; 3.20A {Bacillus weihenstephanensis}
Probab=93.52 E-value=0.082 Score=48.68 Aligned_cols=57 Identities=16% Similarity=0.294 Sum_probs=50.1
Q ss_pred ccchhhhhHHHHHHHhhhhhhhhhhcccCccccchhHHHHHHHHHHHHHHhhhhhhhhhhhhc
Q 002309 621 RQVITILWFSLSTLFFAHIAIFVILAEENTVSTLGRLVLIIWLFVVLIINSSYTASLTSILTV 683 (938)
Q Consensus 621 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~p~s~s~R~~~~~w~~~~lil~s~Yta~L~s~Lt~ 683 (938)
.++.+++||++.++..-| +++..|.+..+|++.++|.++++.+.+...+++++.+..
T Consensus 51 ~~~~~a~y~~~~t~tTvG------yGd~~p~t~~~r~~~~~~~~~g~~~~~~~~~~~~~~~~~ 107 (148)
T 3vou_A 51 LRPLDALYFSVVTLTTVG------DGNFSPQTDFGKVFTILYIFIGIGLVFGFIHKLAVNVQL 107 (148)
T ss_dssp CCHHHHHHHHHHHHTTCC------CSSCCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCH
T ss_pred CCHHHHHHHHHHHHHccC------CCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 368899999999998887 668899999999999999999999999999988876543
No 182
>1orq_C Potassium channel; voltage-dependent, KVAP, FAB complex, MEM protein; 3.20A {Aeropyrum pernix} SCOP: f.14.1.1 PDB: 2a0l_A
Probab=93.23 E-value=0.13 Score=51.11 Aligned_cols=75 Identities=11% Similarity=0.231 Sum_probs=59.6
Q ss_pred HHHhhhheeecccCCCCCCCccccchhhhhHHHHHHHhhhhhhhhhhcccCccccchhHHHHHHHHHHHHHHhhhhhhhh
Q 002309 599 VVGIVVWILEHRINDEFRGPPKRQVITILWFSLSTLFFAHIAIFVILAEENTVSTLGRLVLIIWLFVVLIINSSYTASLT 678 (938)
Q Consensus 599 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~p~s~s~R~~~~~w~~~~lil~s~Yta~L~ 678 (938)
+.+++.+.+++.. .++...+..+++||++.++..-| +++..|.+..+|++.+++.++++.+.+...+.++
T Consensus 146 ~~~~~~~~~e~~~----~~~~~~~~~~s~y~~~~t~tTvG------yGdi~P~t~~~~~~~~~~~~~G~~~~~~~i~~i~ 215 (223)
T 1orq_C 146 YGAFAIYIVEYPD----PNSSIKSVFDALWWAVVTATTVG------YGDVVPATPIGKVIGIAVMLTGISALTLLIGTVS 215 (223)
T ss_dssp HHHHHHHHTTSSS----TTCSCCSHHHHHHHHHHHHTTCC------CCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCC----cCCCcCcchhHHHhHHhHHhccC------CCCCCCCCHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3345556665422 12234578999999999998777 5678899999999999999999999999999999
Q ss_pred hhhhc
Q 002309 679 SILTV 683 (938)
Q Consensus 679 s~Lt~ 683 (938)
+.++.
T Consensus 216 ~~~~~ 220 (223)
T 1orq_C 216 NMFQK 220 (223)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 98865
No 183
>2hxr_A HTH-type transcriptional regulator CYNR; CYNR transcriptional regulator LYSR struc genomics, PSI-2, protein structure initiative; 2.05A {Escherichia coli} PDB: 3hfu_A
Probab=93.04 E-value=1.8 Score=42.69 Aligned_cols=83 Identities=16% Similarity=0.218 Sum_probs=55.0
Q ss_pred ceeEEEecccccccceeeeccCCcceEeeeHHHHHHHHHhCCCCccEEEEecCCCCCCCChhHHHHhhhcceecEEeccE
Q 002309 465 KLLKIGVPNRASYREFVSKVRGSDMFQGFCIDVFTAAVNLLPYAVPYQFVAFGDGHKNPSYTQLVDSITTGVFDAVVGDI 544 (938)
Q Consensus 465 ~~lrv~~~~~~~~~~~~~~~~~~~~~~G~~~dll~~la~~l~f~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~D~~~~~~ 544 (938)
.+||||+... + ...+-..++..+.++.+ .+++++.. ++...++.+|.+|++|+++...
T Consensus 30 g~l~Ig~~~~--~------------~~~~l~~~l~~f~~~~P-~v~l~~~~-------~~~~~~~~~l~~g~~Dl~i~~~ 87 (238)
T 2hxr_A 30 GSLRIAVTPT--F------------TSYFIGPLMADFYARYP-SITLQLQE-------MSQEKIEDMLCRDELDVGIAFA 87 (238)
T ss_dssp -CEEEEECHH--H------------HTTTHHHHHHHHHHHCT-TSCEEEEE-------CCHHHHHHHHHTTSCSEEEEES
T ss_pred CeEEEeechh--h------------HHHHHHHHHHHHHHhCC-CcEEEEEE-------CCHHHHHHHHHcCCCcEEEEcC
Confidence 4689988741 1 12445678888888876 35676665 5578899999999999988532
Q ss_pred eeecCceeeeeeccceecccEEEEEeccC
Q 002309 545 TIVTNRTKIVDFSQPYAASGLVVVVPFRK 573 (938)
Q Consensus 545 ~~t~~r~~~v~fs~p~~~~~~~~lv~~~~ 573 (938)
.. ....+. +.++....+++++++..
T Consensus 88 ~~---~~~~l~-~~~l~~~~~~~v~~~~h 112 (238)
T 2hxr_A 88 PV---HSPELE-AIPLLTESLALVVAQHH 112 (238)
T ss_dssp SC---CCTTEE-EEEEEEEEEEEEEETTS
T ss_pred CC---Ccccce-eeeeccCcEEEEEcCCC
Confidence 11 112222 25677788888887654
No 184
>1lnq_A MTHK channels, potassium channel related protein; rossman fold, helix bundle, membrane protein; 3.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.2.1.9 d.286.1.1 f.14.1.1 PDB: 3rbz_A
Probab=92.98 E-value=0.071 Score=57.04 Aligned_cols=127 Identities=13% Similarity=0.046 Sum_probs=76.6
Q ss_pred cchhhhhHHHHHHHhhhhhhhhhhcccCccccchhHHHHHHHHHHHHHHhhhhhhhhhhhhcccccCCCCChHHhhhCCC
Q 002309 622 QVITILWFSLSTLFFAHIAIFVILAEENTVSTLGRLVLIIWLFVVLIINSSYTASLTSILTVQQLYSPINGIESLRKSDD 701 (938)
Q Consensus 622 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~p~s~s~R~~~~~w~~~~lil~s~Yta~L~s~Lt~~~~~~~i~s~~dL~~~~~ 701 (938)
++.+++||++.++..-| +++..|.+..+|++.++|.++++.+.+...+.+++.++.......... ....+ ..
T Consensus 45 ~~~~a~y~~~~t~tTvG------yGd~~p~t~~~r~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-~~ 116 (336)
T 1lnq_A 45 SWTVSLYWTFVTIATVG------YGDYSPSTPLGMYFTVTLIVLGIGTFAVAVERLLEFLINREQMKLMGL-IDVAK-SR 116 (336)
T ss_dssp CSSTTHHHHHHHHTTCC------CSSCCCCCSSHHHHHTHHHHTTSTTTTTHHHHHTTTC-------------------C
T ss_pred CHHHHHHHHHHHhhccc------CCCCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-hhhcc-cC
Confidence 67889999999998877 567789999999999999999999999999999999988665432221 11111 22
Q ss_pred CeeEEeCchHHHHHHHhcccccccccccCCHHHHHHHHhcCCCCCceEEEEecchhHHHHH
Q 002309 702 PIGYQEGSFAEYYLSQELNISKSRLVALRTPEDYAKALKDGPGKGGVAAVVDERPYVELFL 762 (938)
Q Consensus 702 ~i~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~a~i~~~~~~~~~~ 762 (938)
++.+...+..-..+.+.+..... ++..+...+..+ +.+ .+..++..|....+.+.
T Consensus 117 ~viI~G~G~~g~~l~~~L~~~g~-v~vid~~~~~~~-~~~----~~~~~i~gd~~~~~~L~ 171 (336)
T 1lnq_A 117 HVVICGWSESTLECLRELRGSEV-FVLAEDENVRKK-VLR----SGANFVHGDPTRVSDLE 171 (336)
T ss_dssp EEEEESCCHHHHHHHTTGGGSCE-EEEESCGGGHHH-HHH----TTCEEEESCTTSHHHHH
T ss_pred CEEEECCcHHHHHHHHHHHhCCc-EEEEeCChhhhh-HHh----CCcEEEEeCCCCHHHHH
Confidence 34444433333333343322223 444555555566 655 45667777765544443
No 185
>2esn_A Probable transcriptional regulator; PA0477, APC5828,transcription, PSI, protein struc initiative, MCSG; 2.10A {Pseudomonas aeruginosa} SCOP: a.4.5.37 c.94.1.1
Probab=92.59 E-value=1.2 Score=46.27 Aligned_cols=83 Identities=13% Similarity=0.167 Sum_probs=53.3
Q ss_pred ceeEEEecccccccceeeeccCCcceEeeeHHHHHHHHHhCCCCccEEEEecCCCCCCCChhHHHHhhhcceecEEecc-
Q 002309 465 KLLKIGVPNRASYREFVSKVRGSDMFQGFCIDVFTAAVNLLPYAVPYQFVAFGDGHKNPSYTQLVDSITTGVFDAVVGD- 543 (938)
Q Consensus 465 ~~lrv~~~~~~~~~~~~~~~~~~~~~~G~~~dll~~la~~l~f~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~D~~~~~- 543 (938)
.+||||+... . ...+-.+++..+.++.+ .+++.+.. ++...++..|.+|++|+++..
T Consensus 101 ~~l~Ig~~~~--~------------~~~~l~~~l~~f~~~~P-~i~i~l~~-------~~~~~~~~~l~~g~~Dl~i~~~ 158 (310)
T 2esn_A 101 RTFVFAATDY--T------------AFALLPPLMNRLQHSAP-GVRLRLVN-------AERKLSVEALASGRIDFALGYD 158 (310)
T ss_dssp CEEEEECCHH--H------------HHHHHHHHHHHHHHHST-TCEEEEEC-------CSSSCCHHHHHHTSSSEEEECC
T ss_pred ceEEEEeChH--H------------HHHHHHHHHHHHHHHCC-CeEEEEEe-------CCcccHHHHHHcCCCCEEEecC
Confidence 5799998741 1 12345677888888775 35566654 345678889999999999864
Q ss_pred --EeeecCceeeeeeccceecccEEEEEeccC
Q 002309 544 --ITIVTNRTKIVDFSQPYAASGLVVVVPFRK 573 (938)
Q Consensus 544 --~~~t~~r~~~v~fs~p~~~~~~~~lv~~~~ 573 (938)
.... ...+. +.|+....++++++...
T Consensus 159 ~~~~~~---~~~l~-~~~l~~~~~~~v~~~~~ 186 (310)
T 2esn_A 159 EEHERL---PEGIQ-AHDWFADRYVVVARRDH 186 (310)
T ss_dssp STTCCC---CTTEE-EEEEEEECEEEEEESSC
T ss_pred cccccC---CcCcc-eeeeeccceEEEEeCCC
Confidence 2211 11222 34677788888887654
No 186
>2y7p_A LYSR-type regulatory protein; transcription regulator, DNA-binding, transcription, transcr factor, transcription regulation; HET: SAL PEU; 1.85A {Burkholderia SP} PDB: 2y7k_A* 2y84_A 2y7w_A 2y7r_A
Probab=92.55 E-value=1.2 Score=43.71 Aligned_cols=84 Identities=11% Similarity=0.107 Sum_probs=57.3
Q ss_pred CceeEEEecccccccceeeeccCCcceEeeeHHHHHHHHHhCCCCccEEEEecCCCCCCCChhHHHHhhhcceecEEecc
Q 002309 464 GKLLKIGVPNRASYREFVSKVRGSDMFQGFCIDVFTAAVNLLPYAVPYQFVAFGDGHKNPSYTQLVDSITTGVFDAVVGD 543 (938)
Q Consensus 464 g~~lrv~~~~~~~~~~~~~~~~~~~~~~G~~~dll~~la~~l~f~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~D~~~~~ 543 (938)
.++||||+... ....+-..++..+.++.+ .+++.+.. ++...++++|.+|++|+++..
T Consensus 7 ~g~l~Ig~~~~--------------~~~~~lp~~l~~f~~~~P-~v~l~l~~-------~~~~~l~~~L~~g~iDl~i~~ 64 (218)
T 2y7p_A 7 TRTFNLAMTDI--------------GEMYFMPPLMEALAQRAP-HIQISTLR-------PNAGNLKEDMESGAVDLALGL 64 (218)
T ss_dssp CCEEEEECCHH--------------HHHHHHHHHHHHHHHHCT-TCEEEEEC-------CCTTTHHHHHHHTSSCEEEEC
T ss_pred ceEEEEEecHH--------------HHHHHHHHHHHHHHHHCC-CCEEEEEe-------CCcccHHHHHhCCCceEEEec
Confidence 45789888731 112456678888888876 35666664 557789999999999999853
Q ss_pred EeeecCceeeeeeccceecccEEEEEeccC
Q 002309 544 ITIVTNRTKIVDFSQPYAASGLVVVVPFRK 573 (938)
Q Consensus 544 ~~~t~~r~~~v~fs~p~~~~~~~~lv~~~~ 573 (938)
.. .....+.+ .|+....++++++...
T Consensus 65 ~~---~~~~~l~~-~~l~~~~~~~v~~~~h 90 (218)
T 2y7p_A 65 LP---ELQTGFFQ-RRLFRHRYVCMFRKDH 90 (218)
T ss_dssp CT---TCCTTEEE-EEEEEECEEEEEETTC
T ss_pred CC---CCCcceeE-EEeeeccEEEEEcCCC
Confidence 21 11222333 5788888999888765
No 187
>2ql3_A Probable transcriptional regulator, LYSR family P; APC7314, rhodococcus RHA1, structural genomics, PSI-2; HET: MSE; 2.05A {Rhodococcus SP}
Probab=92.36 E-value=2.6 Score=40.52 Aligned_cols=83 Identities=12% Similarity=0.095 Sum_probs=54.9
Q ss_pred ceeEEEecccccccceeeeccCCcceEeeeHHHHHHHHHhCCCCccEEEEecCCCCCCCChhHHHHhhhcceecEEeccE
Q 002309 465 KLLKIGVPNRASYREFVSKVRGSDMFQGFCIDVFTAAVNLLPYAVPYQFVAFGDGHKNPSYTQLVDSITTGVFDAVVGDI 544 (938)
Q Consensus 465 ~~lrv~~~~~~~~~~~~~~~~~~~~~~G~~~dll~~la~~l~f~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~D~~~~~~ 544 (938)
.+||||+... . ...+-.+++..+.++.+ .+++++.. .+...+..+|.+|++|+++...
T Consensus 5 g~l~Ig~~~~--~------------~~~~l~~~l~~f~~~~P-~i~i~l~~-------~~~~~l~~~l~~g~~Dl~i~~~ 62 (209)
T 2ql3_A 5 GPIAVGCYPA--L------------GPTILPSMLYAFTAEYP-RASVEFRE-------DTQNRLRTQLEGGELDVAIVYD 62 (209)
T ss_dssp EEEEEEECGG--G------------TTTTHHHHHHHHHHHCT-TEEEEEEE-------CCHHHHHHHHHTTSCSEEEEES
T ss_pred eeEEEeechh--h------------hhhhHHHHHHHHHHHCC-CceEEEEE-------CcHHHHHHHHHcCCccEEEEec
Confidence 5789988741 1 12345678888888886 35666665 5678899999999999987532
Q ss_pred eeecCceeeeeeccceecccEEEEEeccC
Q 002309 545 TIVTNRTKIVDFSQPYAASGLVVVVPFRK 573 (938)
Q Consensus 545 ~~t~~r~~~v~fs~p~~~~~~~~lv~~~~ 573 (938)
. .....+. +.++....++++++...
T Consensus 63 ~---~~~~~l~-~~~l~~~~~~~v~~~~h 87 (209)
T 2ql3_A 63 L---DLSPEWQ-TVPLMTREPMVVLGAEH 87 (209)
T ss_dssp S---SCCTTEE-EEEEEEECCEEEEETTC
T ss_pred C---CCCCCce-EEEeecCceEEEEeCCC
Confidence 1 1111222 24677777888877544
No 188
>2fyi_A HTH-type transcriptional regulator CBL; Lys-R family, cofactor-binding DO cysteine biosynthesis; 2.80A {Escherichia coli K12} SCOP: c.94.1.1
Probab=92.30 E-value=2.1 Score=42.02 Aligned_cols=85 Identities=14% Similarity=0.193 Sum_probs=56.6
Q ss_pred CceeEEEecccccccceeeeccCCcceEeeeHHHHHHHHHhCCCCccEEEEecCCCCCCCChhHHHHhhhcceecEEecc
Q 002309 464 GKLLKIGVPNRASYREFVSKVRGSDMFQGFCIDVFTAAVNLLPYAVPYQFVAFGDGHKNPSYTQLVDSITTGVFDAVVGD 543 (938)
Q Consensus 464 g~~lrv~~~~~~~~~~~~~~~~~~~~~~G~~~dll~~la~~l~f~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~D~~~~~ 543 (938)
.++||||+... ....+-.+++..+.++.+ .+++++.. ++...++.+|.+|++|+++..
T Consensus 13 ~g~lrIg~~~~--------------~~~~~l~~~l~~f~~~~P-~v~l~l~~-------~~~~~~~~~l~~g~~Dl~i~~ 70 (228)
T 2fyi_A 13 SGVLTIATTHT--------------QARYSLPEVIKAFRELFP-EVRLELIQ-------GTPQEIATLLQNGEADIGIAS 70 (228)
T ss_dssp CEEEEEEECHH--------------HHHHTHHHHHHHHHHHCT-TEEEEEEE-------CCHHHHHHHHHHTSCSEEEES
T ss_pred cceEEEeeccc--------------hHHHHHHHHHHHHHHHCC-CcEEEEEe-------CCHHHHHHHHHcCCccEEEEe
Confidence 35799988741 112446678888888886 36677765 568899999999999999853
Q ss_pred EeeecCceeeeeeccceecccEEEEEeccC
Q 002309 544 ITIVTNRTKIVDFSQPYAASGLVVVVPFRK 573 (938)
Q Consensus 544 ~~~t~~r~~~v~fs~p~~~~~~~~lv~~~~ 573 (938)
... .....+. ..++....+++++++..
T Consensus 71 ~~~--~~~~~l~-~~~l~~~~~~~v~~~~h 97 (228)
T 2fyi_A 71 ERL--SNDPQLV-AFPWFRWHHSLLVPHDH 97 (228)
T ss_dssp SSS--TTCTTEE-EEEEEEECEEEEEETTC
T ss_pred ccc--CCCCCce-EEEeeecceEEEecCCC
Confidence 211 1112222 24677778888887654
No 189
>1i6a_A OXYR, hydrogen peroxide-inducible genes activator; OXYR regulatory domain, oxidized form, transcription; 2.30A {Escherichia coli} SCOP: c.94.1.1 PDB: 1i69_A
Probab=92.06 E-value=0.35 Score=47.49 Aligned_cols=83 Identities=13% Similarity=0.174 Sum_probs=56.5
Q ss_pred ceeEEEecccccccceeeeccCCcceEeeeHHHHHHHHHhCCCCccEEEEecCCCCCCCChhHHHHhhhcceecEEeccE
Q 002309 465 KLLKIGVPNRASYREFVSKVRGSDMFQGFCIDVFTAAVNLLPYAVPYQFVAFGDGHKNPSYTQLVDSITTGVFDAVVGDI 544 (938)
Q Consensus 465 ~~lrv~~~~~~~~~~~~~~~~~~~~~~G~~~dll~~la~~l~f~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~D~~~~~~ 544 (938)
.+||||+... ....+-.+++..+.++.+ .+++++.. +....++.+|.+|++|+++...
T Consensus 5 g~lrIg~~~~--------------~~~~~l~~~l~~f~~~~P-~v~l~l~~-------~~~~~~~~~l~~g~~Dl~i~~~ 62 (219)
T 1i6a_A 5 GPLHIGLIPT--------------VGPYLLPHIIPMLHQTFP-KLEMYLHE-------AQTHQLLAQLDSGKLDAVILAL 62 (219)
T ss_dssp EEEEEEECTT--------------THHHHHHHHHHHHHHHCT-TEEEEEEE-------CCHHHHHHHHHHTSCSEEEEEC
T ss_pred eEEEEEeccc--------------hhhhhhhHHHHHHHHHCC-CeEEEEEE-------CChHHHHHHHHcCCeeEEEecC
Confidence 5689988741 122456778888888876 36677765 5688999999999999988532
Q ss_pred eeecCceeeeeeccceecccEEEEEeccC
Q 002309 545 TIVTNRTKIVDFSQPYAASGLVVVVPFRK 573 (938)
Q Consensus 545 ~~t~~r~~~v~fs~p~~~~~~~~lv~~~~ 573 (938)
. .....+. +.|+....+++++++..
T Consensus 63 ~---~~~~~l~-~~~l~~~~~~~v~~~~h 87 (219)
T 1i6a_A 63 V---KESEAFI-EVPLFDEPMLLAIYEDH 87 (219)
T ss_dssp C---GGGTTSE-EEEEEEEEEEEEEETTS
T ss_pred C---CCCCCcc-eeeeecccEEEEEcCCC
Confidence 1 1112222 24677788888887655
No 190
>2xed_A Putative maleate isomerase; nicotinic acid catabolism, cofactor-independent CIS-trans isomerase; 1.95A {Nocardia farcinica} PDB: 2xec_A
Probab=91.96 E-value=1.5 Score=44.88 Aligned_cols=126 Identities=17% Similarity=0.097 Sum_probs=80.7
Q ss_pred HHHHHHhcCcEEEEcCCChhHHH--------HHHHhhccC-----CccEEEcccCCCCCCCCCCCceEEecCCchHHHHH
Q 002309 88 EALRFMETDIVAIIGPQCSTVAH--------IVSYVSNEL-----QVPLLSFGVTDPTLSSLQYPFFVRTTQSDSYQMTA 154 (938)
Q Consensus 88 ~a~~li~~~V~aviGp~~s~~~~--------~va~~~~~~-----~iP~Is~~~~~~~l~~~~~p~~~r~~ps~~~~~~a 154 (938)
.+..|.+.++.+|+-+.++.... ....+-+.. ++|+++. +.+
T Consensus 82 aa~~L~~~g~d~IviaCnta~~~~G~~~~~~~~~~l~~~~~~~~~~iPv~~~-------------------------~~A 136 (273)
T 2xed_A 82 CVLEIADAAPEVILYACLVAVMVGGPGEHHRVESAVAEQLATGGSQALVRSS-------------------------AGA 136 (273)
T ss_dssp HHHHHHTTCCSEEEECCHHHHHTTCTTHHHHHHHHHHHHHHHTTCCCEEEEH-------------------------HHH
T ss_pred HHHHHhhcCCCEEEECCChHHHhcccchhHHHHHHHHHHhhccCCCCCEecH-------------------------HHH
Confidence 34445455888888765554321 123344444 8898862 356
Q ss_pred HHHHHHhcCCcEEEEEEEcCccccchHHHHHHHHhhcceEEEEEeecCCCC-----CCChhhHHHHHHHHhcCCceEEEE
Q 002309 155 VAEMVSYYGWNAVSVIFVDNEYGRNGVSALNDKLAERRCRISYKSGIPPES-----GVNTGYVMDLLVKVALMESRVIVL 229 (938)
Q Consensus 155 i~~~l~~~~w~~vaii~~d~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~-----~~~~~d~~~~l~~lk~~~~~viv~ 229 (938)
++..++..+-++|+++. .|.....+.+.+.+++.|+++.......... ..+...+...++++...++|+||+
T Consensus 137 ~~~al~~~g~~rvgvlt---p~~~~~~~~~~~~l~~~Gi~v~~~~~~~~~~~~~~g~~~~~~l~~~~~~l~~~gadaIvL 213 (273)
T 2xed_A 137 LVEGLRALDAQRVALVT---PYMRPLAEKVVAYLEAEGFTISDWRALEVADNTEVGCIPGEQVMAAARSLDLSEVDALVI 213 (273)
T ss_dssp HHHHHHHTTCCEEEEEE---CSCHHHHHHHHHHHHHTTCEEEEEEECCCCBHHHHHTCCHHHHHHHHHHSCCTTCSEEEE
T ss_pred HHHHHHHcCCCeEEEEc---CChhhhHHHHHHHHHHCCCEEeccccCCCccchhhcccCHHHHHHHHHHHhhCCCCEEEE
Confidence 66666777889999996 4555555678889999999876544433210 123456777788887788999999
Q ss_pred E-eChhhHHHHHH
Q 002309 230 H-VSPSLGFQVFS 241 (938)
Q Consensus 230 ~-~~~~~~~~~l~ 241 (938)
. |..-....+..
T Consensus 214 g~CT~l~~~~~~~ 226 (273)
T 2xed_A 214 SCAVQMPSLPLVE 226 (273)
T ss_dssp ESSSSSCCTTHHH
T ss_pred cCCCCcchHHhHH
Confidence 9 87654433333
No 191
>2qks_A KIR3.1-prokaryotic KIR channel chimera; G-protein gated inward rectifier, potassium channel selectivity filter, metal transport; HET: BNG; 2.20A {Burkholderia xenovorans}
Probab=91.61 E-value=0.3 Score=51.06 Aligned_cols=58 Identities=12% Similarity=0.094 Sum_probs=53.4
Q ss_pred cchhhhhHHHHHHHhhhhhhhhhhcccCccccchhHHHHHHHHHHHHHHhhhhhhhhhhhhccc
Q 002309 622 QVITILWFSLSTLFFAHIAIFVILAEENTVSTLGRLVLIIWLFVVLIINSSYTASLTSILTVQQ 685 (938)
Q Consensus 622 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~p~s~s~R~~~~~w~~~~lil~s~Yta~L~s~Lt~~~ 685 (938)
++..++||++.++..-| +++..|.+..+|++.+++.++++++.+.-++.+++.++.+.
T Consensus 78 s~~~a~y~s~vT~tTVG------YGDi~P~t~~gr~~~~~~~l~G~~~~a~~~g~i~~~~~~~~ 135 (321)
T 2qks_A 78 GFGGAFFFSVETLATVG------YGDMHPQTVYAHWIATLEIFVGMSSIALATGCAFIKMSQPK 135 (321)
T ss_dssp THHHHHHHHHHHHTTCC------CCSSCBCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCC
T ss_pred chhheeeeeeEEecccc------CCCcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 78899999999998887 66888999999999999999999999999999999998764
No 192
>1zbm_A Hypothetical protein AF1704; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.30A {Archaeoglobus fulgidus} SCOP: c.94.1.1
Probab=91.33 E-value=0.96 Score=46.51 Aligned_cols=102 Identities=16% Similarity=-0.019 Sum_probs=56.7
Q ss_pred HHhhhCCCCeeEE-eCchHHHHHHHhcccccccccccCCHHHHHHHHhcCCCCCceEEEEecc-hhHHHHHhcCCc-EEE
Q 002309 694 ESLRKSDDPIGYQ-EGSFAEYYLSQELNISKSRLVALRTPEDYAKALKDGPGKGGVAAVVDER-PYVELFLSSQCS-FRI 770 (938)
Q Consensus 694 ~dL~~~~~~i~~~-~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~a~i~~~-~~~~~~~~~~~~-l~~ 770 (938)
+||. |++|++. .++....++..... ..+++ +.+..+...++.+ |++||++... +... ......+ +.-
T Consensus 99 ~DLk--GK~Iav~~~~s~~~~ll~~~l~--~~~~~-~~~~~~~~~al~~----G~vDa~~~~~~~~~~-~~~~g~~~~~~ 168 (280)
T 1zbm_A 99 ISLD--GKRIAVPGRYTTANLLLKLAVE--DFEPV-EMPFDRIIQAVLD----EEVDAGLLIHEGQIT-YADYGLKCVLD 168 (280)
T ss_dssp CCCT--TCEEEESCTTSHHHHHHHHHCS--SCEEE-ECCGGGHHHHHHT----TSSSEEEECSGGGGT-GGGGTCEEEEE
T ss_pred hhcC--CCEEEecCCCcHHHHHHHHHhc--cCceE-ecCHHHHHHHHHc----CCCCEEEEechHHhH-HHhcCCeEecc
Confidence 7787 8999996 44543333432221 12333 3456788999999 8999987543 4443 2222212 111
Q ss_pred eCcc----c-cccc-eEeeecCC-Cc-chhhHHHHHHhhhccC
Q 002309 771 VGQE----F-TKSG-WGFAFPRD-SP-LAVDLSSAILELAENG 805 (938)
Q Consensus 771 ~~~~----~-~~~~-~~~~~~k~-sp-l~~~i~~~il~l~e~G 805 (938)
.++. . .+.+ .+++++++ .| +...|.+++.+..+..
T Consensus 169 ~~~~~~~~~g~~~~~~~~~~~~~~~p~~v~~~~~a~~~a~~~~ 211 (280)
T 1zbm_A 169 LWDWWSEQVKLPLPLGLNAIRRDLSVEVQEEFLRAMRESIAFA 211 (280)
T ss_dssp HHHHHHTTCSSCEEEEEEEEETTSCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhCCCCCeeEEEEcccCCHHHHHHHHHHHHHHHHHH
Confidence 1110 0 1112 36788888 56 7778888777765543
No 193
>3fxq_A LYSR type regulator of TSAMBCD; transcriptional regulator, LTTR, TSAR, WHTH, DNA- transcription, transcription regulation; 1.85A {Comamonas testosteroni} PDB: 3fxr_A* 3fxu_A* 3fzj_A 3n6t_A 3n6u_A*
Probab=91.31 E-value=1.2 Score=46.38 Aligned_cols=85 Identities=12% Similarity=0.079 Sum_probs=55.2
Q ss_pred ceeEEEecccccccceeeeccCCcceEeeeHHHHHHHHHhCCCCccEEEEecCCCCCCCChhHHHHhhhcceecEEeccE
Q 002309 465 KLLKIGVPNRASYREFVSKVRGSDMFQGFCIDVFTAAVNLLPYAVPYQFVAFGDGHKNPSYTQLVDSITTGVFDAVVGDI 544 (938)
Q Consensus 465 ~~lrv~~~~~~~~~~~~~~~~~~~~~~G~~~dll~~la~~l~f~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~D~~~~~~ 544 (938)
++||||+... + ...+-..++..+.+..+ .+++.+.. +..+.++..|.+|++|+++...
T Consensus 92 g~l~I~~~~~--~------------~~~~l~~~l~~f~~~~P-~i~i~l~~-------~~~~~~~~~l~~g~~Dlai~~~ 149 (305)
T 3fxq_A 92 GHITFAASPA--I------------ALAALPLALASFAREFP-DVTVNVRD-------GMYPAVSPQLRDGTLDFALTAA 149 (305)
T ss_dssp TEEEEEECHH--H------------HHTHHHHHHHHHHHHCT-TCEEEEEE-------CCTTTTHHHHHHTSSSEEEEEC
T ss_pred ceEEEEechH--H------------HHHHHHHHHHHHHHHCC-CCEEEEEE-------CCHHHHHHHHHcCCCCEEEecC
Confidence 4689988841 1 12345678888888876 35566665 4567889999999999998632
Q ss_pred eeecCceeeeeeccceecccEEEEEeccC
Q 002309 545 TIVTNRTKIVDFSQPYAASGLVVVVPFRK 573 (938)
Q Consensus 545 ~~t~~r~~~v~fs~p~~~~~~~~lv~~~~ 573 (938)
.... ....+ -+.|+....++++++...
T Consensus 150 ~~~~-~~~~l-~~~~L~~~~~~~v~~~~h 176 (305)
T 3fxq_A 150 HKHD-IDTDL-EAQPLYVSDVVIVGQRQH 176 (305)
T ss_dssp CGGG-SCTTE-EEEEEEECCEEEEEETTC
T ss_pred CCCC-CccCe-eEEEeecCcEEEEEcCCC
Confidence 2111 01122 235677788888887654
No 194
>2zzv_A ABC transporter, solute-binding protein; periplasmic substrate binding protein, calcium, lactate, trap transporter, transport protein; 1.40A {Thermus thermophilus} PDB: 2zzw_A 2zzx_A
Probab=90.94 E-value=0.98 Score=48.54 Aligned_cols=59 Identities=22% Similarity=0.228 Sum_probs=44.0
Q ss_pred CCCCChHHhhhCCCCeeEEeCchHHHHHHHhcccccccccccCCHHHHHHHHhcCCCCCceEEEEecchhH
Q 002309 688 SPINGIESLRKSDDPIGYQEGSFAEYYLSQELNISKSRLVALRTPEDYAKALKDGPGKGGVAAVVDERPYV 758 (938)
Q Consensus 688 ~~i~s~~dL~~~~~~i~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~a~i~~~~~~ 758 (938)
.+|++++||. |++|.+. +......+ +..+.. .+++ ...|...+|++ |.+|+.....+..
T Consensus 164 ~pI~s~~DLk--G~kirv~-~~~~~~~~-~~lGa~---pv~~-~~~e~~~ALq~----G~VDg~~~~~~~~ 222 (361)
T 2zzv_A 164 KPIRRFEDFK--GVKLRVP-GGMIAEVF-AAAGAS---TVLL-PGGEVYPALER----GVIDAADFVGPAV 222 (361)
T ss_dssp SCCCSGGGGT--TCEEECC-SHHHHHHH-HHTTCE---EECC-CGGGHHHHHHT----TSCSEEECSCHHH
T ss_pred CCcCChHHhC--CCEEeec-CHHHHHHH-HHcCCe---eeec-ChHHHHHHHHc----CCcceeecCCcch
Confidence 6899999999 9999888 55555566 445533 2333 56788999999 8999998777665
No 195
>1al3_A Cys regulon transcriptional activator CYSB; LYSR family, cysteine biosynthesis, transcription regulation; 1.80A {Klebsiella aerogenes} SCOP: c.94.1.1
Probab=90.93 E-value=3.9 Score=42.84 Aligned_cols=206 Identities=14% Similarity=0.078 Sum_probs=119.9
Q ss_pred ceeEEEecccccccceeeeccCCcceEeeeHHHHHHHHHhCCCCccEEEEecCCCCCCCChhHHHHhhhcceecEEeccE
Q 002309 465 KLLKIGVPNRASYREFVSKVRGSDMFQGFCIDVFTAAVNLLPYAVPYQFVAFGDGHKNPSYTQLVDSITTGVFDAVVGDI 544 (938)
Q Consensus 465 ~~lrv~~~~~~~~~~~~~~~~~~~~~~G~~~dll~~la~~l~f~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~D~~~~~~ 544 (938)
++||||++.. + ...+-..++..+.+..+ .+++.+.. ++...++..|.+|++|+++...
T Consensus 93 g~l~I~~~~~--~------------~~~~l~~~l~~f~~~~P-~v~i~l~~-------~~~~~~~~~l~~g~~Dlai~~~ 150 (324)
T 1al3_A 93 GSLYVATTHT--Q------------ARYALPGVIKGFIERYP-RVSLHMHQ-------GSPTQIAEAVSKGNADFAIATE 150 (324)
T ss_dssp EEEEEEECHH--H------------HHHTSHHHHHHHHHHCT-EEEEEEEE-------CCHHHHHHHHHTTCCSEEEESS
T ss_pred CeEEEEechh--h------------hhhHHHHHHHHHHHHCC-CCEEEEEE-------CCHHHHHHHHHCCCceEEEEec
Confidence 5789988741 1 12345678888888876 35566655 5578899999999999998632
Q ss_pred eeecCceeeeeeccceecccEEEEEeccCCCCCcceeeccCchhhHHHHHHHHHHHHhhhheeecccCCCCCCCccccch
Q 002309 545 TIVTNRTKIVDFSQPYAASGLVVVVPFRKLNTGAWAFLRPFSPLMWTVTACFFVVVGIVVWILEHRINDEFRGPPKRQVI 624 (938)
Q Consensus 545 ~~t~~r~~~v~fs~p~~~~~~~~lv~~~~~~~~~~~~l~PF~~~vW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 624 (938)
... ....+. +.|+....++++++...+..
T Consensus 151 ~~~--~~~~l~-~~~L~~~~~~~v~~~~~pl~------------------------------------------------ 179 (324)
T 1al3_A 151 ALH--LYDDLV-MLPCYHWNRSIVVTPEHPLA------------------------------------------------ 179 (324)
T ss_dssp CCC--TTSCEE-EEEEEEECEEEEECTTSTTT------------------------------------------------
T ss_pred CCC--CCCCee-EEEecCCceEEEEcCCCccc------------------------------------------------
Confidence 211 111222 24666777788877554110
Q ss_pred hhhhHHHHHHHhhhhhhhhhhcccCccccchhHHHHHHHHHHHHHHhhhhhhhhhhhhcccccCCCCChHHhhhCCCCee
Q 002309 625 TILWFSLSTLFFAHIAIFVILAEENTVSTLGRLVLIIWLFVVLIINSSYTASLTSILTVQQLYSPINGIESLRKSDDPIG 704 (938)
Q Consensus 625 ~~~~~~~~~l~~~~~~~~~~~~~~~p~s~s~R~~~~~w~~~~lil~s~Yta~L~s~Lt~~~~~~~i~s~~dL~~~~~~i~ 704 (938)
....-+++||. +.++.
T Consensus 180 --------------------------------------------------------------~~~~~~~~dL~--~~~~i 195 (324)
T 1al3_A 180 --------------------------------------------------------------TKGSVSIEELA--QYPLV 195 (324)
T ss_dssp --------------------------------------------------------------TTSCCCHHHHH--TSEEE
T ss_pred --------------------------------------------------------------cCCCCCHHHHh--CCCeE
Confidence 01234688888 55533
Q ss_pred -EEeCch----HHHHHHHhcccccccccccCCHHHHHHHHhcCCCCCceEEEEecchhHHHHHhcCCcEEEe--Cccccc
Q 002309 705 -YQEGSF----AEYYLSQELNISKSRLVALRTPEDYAKALKDGPGKGGVAAVVDERPYVELFLSSQCSFRIV--GQEFTK 777 (938)
Q Consensus 705 -~~~~s~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~a~i~~~~~~~~~~~~~~~l~~~--~~~~~~ 777 (938)
+..+.. ...++. ..+.........++.....+.+.. |...+++-+...... . ..++..+ ......
T Consensus 196 ~~~~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~lv~~----G~Giailp~~~~~~~-~--~~~L~~~~~~~~~~~ 267 (324)
T 1al3_A 196 TYTFGFTGRSELDTAFN-RAGLTPRIVFTATDADVIKTYVRL----GLGVGVIASMAVDPV-S--DPDLVKLDANGIFSH 267 (324)
T ss_dssp EECTTSTTHHHHHHHHH-HHTCCCEEEEEESSHHHHHHHHHH----TSCEEEEEGGGCCTT-T--CTTSEEEECBTTBCC
T ss_pred EecCCCcHHHHHHHHHH-HcCCCCceEEEeCCHHHHHHHHHh----CCCeEEechhhhhhh-c--cCCeEEEECCCCCcc
Confidence 333322 233342 233332334456888888999998 555666655322211 1 2344444 333334
Q ss_pred cceEeeecCCCcchhhHHHHHHhhhccCcHHHHHHhhcC
Q 002309 778 SGWGFAFPRDSPLAVDLSSAILELAENGDLQRIHDKWLM 816 (938)
Q Consensus 778 ~~~~~~~~k~spl~~~i~~~il~l~e~G~~~~l~~~w~~ 816 (938)
..++++.+++.+....+...+..+.+.- -+.+.++++.
T Consensus 268 ~~~~l~~~~~~~~~~~~~~fi~~l~~~~-~~~~~~~~~~ 305 (324)
T 1al3_A 268 STTKIGFRRSTFLRSYMYDFIQRFAPHL-TRDVVDTAVA 305 (324)
T ss_dssp EEEEEEEETTCCCCHHHHHHHHHHCTTC-CHHHHHHHHH
T ss_pred eEEEEEEeCCCCCCHHHHHHHHHHHHHh-ccchhhhhhh
Confidence 5688888998877777777777666542 2344555543
No 196
>3beh_A MLL3241 protein; transmembrane protein, membrane protein; HET: LDA; 3.10A {Mesorhizobium loti} PDB: 2zd9_A*
Probab=90.52 E-value=0.19 Score=54.17 Aligned_cols=75 Identities=16% Similarity=0.230 Sum_probs=59.6
Q ss_pred HHHhhhheeecccCCCCCCCccccchhhhhHHHHHHHhhhhhhhhhhcccCccccchhHHHHHHHHHHHHHHhhhhhhhh
Q 002309 599 VVGIVVWILEHRINDEFRGPPKRQVITILWFSLSTLFFAHIAIFVILAEENTVSTLGRLVLIIWLFVVLIINSSYTASLT 678 (938)
Q Consensus 599 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~p~s~s~R~~~~~w~~~~lil~s~Yta~L~ 678 (938)
+.+++.+.+++..+++ ...++..++||++.++..-| +++..|.+..+|++.+++.++++++.+..++.++
T Consensus 142 ~~a~~~~~~e~~~~~~----~f~~~~~s~y~~~~t~ttvG------ygd~~p~t~~~~~~~~~~~~~g~~~~~~~~~~i~ 211 (355)
T 3beh_A 142 AVALAAYVIERDIQPE----KFGSIPQAMWWAVVTLSTTG------YGDTIPQSFAGRVLAGAVMMSGIGIFGLWAGILA 211 (355)
T ss_dssp HHHHHHHHHHTTTCHH----HHSSHHHHHHHHHHHHTTCC------CSSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhcCCCCc----ccccHHHHHHHHHhheeecC------CCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455666776543221 12368899999999998777 5677899999999999999999999999999999
Q ss_pred hhhhc
Q 002309 679 SILTV 683 (938)
Q Consensus 679 s~Lt~ 683 (938)
+.+..
T Consensus 212 ~~~~~ 216 (355)
T 3beh_A 212 TGFYQ 216 (355)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 88864
No 197
>2dgd_A 223AA long hypothetical arylmalonate decarboxylas; octamer, alpha/beta structure, lyase; 2.90A {Sulfolobus tokodaii}
Probab=89.80 E-value=2 Score=42.40 Aligned_cols=87 Identities=7% Similarity=0.010 Sum_probs=57.7
Q ss_pred HHHHHHHHHhcCCcEEEEEEEcCccccchHHHHHHHHhhcceEEEEEeecCCCC-----CCChhhHHHHHHHHhcC--Cc
Q 002309 152 MTAVAEMVSYYGWNAVSVIFVDNEYGRNGVSALNDKLAERRCRISYKSGIPPES-----GVNTGYVMDLLVKVALM--ES 224 (938)
Q Consensus 152 ~~ai~~~l~~~~w~~vaii~~d~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~-----~~~~~d~~~~l~~lk~~--~~ 224 (938)
..++++.++..+-++|+++. .|+....+.+.+.+++.|+++.......... ..+...+...++++... ++
T Consensus 96 ~~a~~~a~~~~g~~rvgvlt---~~~~~~~~~~~~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ga 172 (223)
T 2dgd_A 96 EESVYELLKKLNVRKLWIGT---PYIKERTLEEVEWWRNKGFEIVGYDGLGKIRGIDISNTPIFTIYRLVKRHLNEVLKA 172 (223)
T ss_dssp HHHHHHHHHHTTCCEEEEEE---SSCHHHHHHHHHHHHTTTCEEEEEEECCCCSHHHHHTCCHHHHHHHHHTTHHHHTTS
T ss_pred HHHHHHHHHHcCCCeEEEEe---CCchHHHHHHHHHHHhCCcEEecccCCCCCCcchhhccCHHHHHHHHHHHhcccCCC
Confidence 45666667777889999996 4555556677889999999876544333210 01245577777777767 89
Q ss_pred eEEEEEeChhhHHHHHH
Q 002309 225 RVIVLHVSPSLGFQVFS 241 (938)
Q Consensus 225 ~viv~~~~~~~~~~~l~ 241 (938)
++||+.|..-....+..
T Consensus 173 daIvLgCT~l~~~~~~~ 189 (223)
T 2dgd_A 173 DAVYIACTALSTYEAVQ 189 (223)
T ss_dssp SEEEECCTTSCCTTHHH
T ss_pred CEEEEeCCcccHHHHHH
Confidence 99999887655433333
No 198
>1ixc_A CBNR, LYSR-type regulatory protein; long alpha helix connecting DNA binding and regulatory domai binding protein; 2.20A {Cupriavidus necator} SCOP: a.4.5.37 c.94.1.1 PDB: 1iz1_A
Probab=89.12 E-value=6.2 Score=40.29 Aligned_cols=84 Identities=10% Similarity=0.001 Sum_probs=55.9
Q ss_pred CceeEEEecccccccceeeeccCCcceEeeeHHHHHHHHHhCCCCccEEEEecCCCCCCCChhHHHHhhhcceecEEecc
Q 002309 464 GKLLKIGVPNRASYREFVSKVRGSDMFQGFCIDVFTAAVNLLPYAVPYQFVAFGDGHKNPSYTQLVDSITTGVFDAVVGD 543 (938)
Q Consensus 464 g~~lrv~~~~~~~~~~~~~~~~~~~~~~G~~~dll~~la~~l~f~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~D~~~~~ 543 (938)
..+||||++.. + ...+-.+++..+.++.+ .+++.+.. ++...++.+|.+|++|+++..
T Consensus 90 ~g~l~Ig~~~~--~------------~~~~l~~~l~~f~~~~P-~i~l~~~~-------~~~~~~~~~l~~g~~Dl~i~~ 147 (294)
T 1ixc_A 90 VGELSVAYFGT--P------------IYRSLPLLLRAFLTSTP-TATVSLTH-------MTKDEQVEGLLAGTIHVGFSR 147 (294)
T ss_dssp CEEEEEEECSG--G------------GGTHHHHHHHHHHHHCT-TEEEEEEE-------CCHHHHHHHHHHTSCSEEEES
T ss_pred CceEEEEEccc--h------------hHHHHHHHHHHHHHHCC-CcEEEEEe-------CCHHHHHHHHHCCCccEEEEe
Confidence 35799998851 1 12445678888888875 35566665 457789999999999999864
Q ss_pred EeeecCceeeeeeccceecccEEEEEeccC
Q 002309 544 ITIVTNRTKIVDFSQPYAASGLVVVVPFRK 573 (938)
Q Consensus 544 ~~~t~~r~~~v~fs~p~~~~~~~~lv~~~~ 573 (938)
.... ...+. +.|+....++++++...
T Consensus 148 ~~~~---~~~l~-~~~l~~~~~~~v~~~~~ 173 (294)
T 1ixc_A 148 FFPR---HPGIE-IVNIAQEDLYLAVHRSQ 173 (294)
T ss_dssp CCCC---CTTEE-EEEEEEEEEEEEEEGGG
T ss_pred cCCC---CCCce-EEEEeeccEEEEEeCCC
Confidence 3221 12222 25677778888887654
No 199
>4esw_A Pyrimidine biosynthesis enzyme THI13; thiamin pyrimidine biosynthesis, transferase; HET: CIT; 1.60A {Candida albicans} PDB: 4esx_A*
Probab=88.69 E-value=1.5 Score=46.61 Aligned_cols=66 Identities=18% Similarity=0.315 Sum_probs=41.0
Q ss_pred CCCCChHHhhhCCCCeeEEeCchHHHHH---HHhcccccccccccCCHHHHHHHHhcCCCCCceEEEEecchhHHH
Q 002309 688 SPINGIESLRKSDDPIGYQEGSFAEYYL---SQELNISKSRLVALRTPEDYAKALKDGPGKGGVAAVVDERPYVEL 760 (938)
Q Consensus 688 ~~i~s~~dL~~~~~~i~~~~~s~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~a~i~~~~~~~~ 760 (938)
..+++++||. |++||+.. +....++ .+..++....+..+....+...++.+ |.+||.+.-.++...
T Consensus 101 ~~~~~~~dLk--GK~ig~~~-~~~~~~l~~~L~~~Gl~~~dv~~v~~~~~~~~al~~----G~vDa~~~~~p~~~~ 169 (342)
T 4esw_A 101 GITSDFQSLK--GKRIGYVG-EFGKIQVDELTKHYGMTPDDYVAVRCGMNVAKYILE----GTIDCGIGIECIQQV 169 (342)
T ss_dssp SCCSSGGGGT--TCEEEESS-SHHHHHHHHHHGGGTCCGGGSEEEECGGGHHHHHHH----TSSSEEEEETTTHHH
T ss_pred cccCCHHHhC--CCEEEecC-CchHHHHHHHHHHcCCChhheEEecCCHHHHHHHHc----CCCCEEEEeccchHH
Confidence 4567899998 99999854 3333222 23445544444433334456678888 899998876655433
No 200
>2h9b_A HTH-type transcriptional regulator BENM; LTTR, transcriptional activator, LYSR-type transcripti regulator; 1.80A {Acinetobacter SP} PDB: 2h99_A 3k1m_A 3k1n_A 3k1p_A 2f7a_A* 2f6p_A 2f78_A 2f6g_A* 2f8d_A 2f97_A*
Probab=87.77 E-value=14 Score=37.99 Aligned_cols=82 Identities=15% Similarity=0.218 Sum_probs=54.6
Q ss_pred eeEEEecccccccceeeeccCCcceEeeeHHHHHHHHHhCCCCccEEEEecCCCCCCCChhHHHHhhhcceecEEeccEe
Q 002309 466 LLKIGVPNRASYREFVSKVRGSDMFQGFCIDVFTAAVNLLPYAVPYQFVAFGDGHKNPSYTQLVDSITTGVFDAVVGDIT 545 (938)
Q Consensus 466 ~lrv~~~~~~~~~~~~~~~~~~~~~~G~~~dll~~la~~l~f~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~D~~~~~~~ 545 (938)
+||||+... + ...+-.+++..+.+..+ .+++.+.. ++...++.+|.+|++|+++....
T Consensus 91 ~l~Ig~~~~--~------------~~~~l~~~l~~f~~~~P-~v~i~l~~-------~~~~~~~~~l~~g~~Dlai~~~~ 148 (312)
T 2h9b_A 91 TIRIGFVGS--L------------LFGLLPRIIHLYRQAHP-NLRIELYE-------MGTKAQTEALKEGRIDAGFGRLK 148 (312)
T ss_dssp EEEEEECGG--G------------GGTTHHHHHHHHHHTCT-TCEEEEEE-------CCHHHHHHHHHTTSCSEEEESSC
T ss_pred eEEEEechh--h------------hHhhHHHHHHHHHHHCC-CcEEEEEe-------CCHHHHHHHHHcCCCCEEEEeCC
Confidence 689988741 1 12445678888888775 35566665 55789999999999999986432
Q ss_pred eecCceeeeeeccceecccEEEEEeccC
Q 002309 546 IVTNRTKIVDFSQPYAASGLVVVVPFRK 573 (938)
Q Consensus 546 ~t~~r~~~v~fs~p~~~~~~~~lv~~~~ 573 (938)
.... .+. +.|+....++++++...
T Consensus 149 ~~~~---~l~-~~~L~~~~~~~v~~~~h 172 (312)
T 2h9b_A 149 ISDP---AIK-HSLLRNERLMVAVHASH 172 (312)
T ss_dssp CCCT---TEE-EEEEEEEEEEEEEETTS
T ss_pred CCCC---Cce-EEEeecceEEEEEcCCC
Confidence 2111 122 34677778888887654
No 201
>2h98_A HTH-type transcriptional regulator CATM; BENM, LTTR; 1.80A {Acinetobacter SP} PDB: 2h9q_A* 2f7b_A 2f7c_A* 3glb_A* 3m1e_A
Probab=87.42 E-value=20 Score=36.94 Aligned_cols=82 Identities=12% Similarity=0.214 Sum_probs=54.5
Q ss_pred eeEEEecccccccceeeeccCCcceEeeeHHHHHHHHHhCCCCccEEEEecCCCCCCCChhHHHHhhhcceecEEeccEe
Q 002309 466 LLKIGVPNRASYREFVSKVRGSDMFQGFCIDVFTAAVNLLPYAVPYQFVAFGDGHKNPSYTQLVDSITTGVFDAVVGDIT 545 (938)
Q Consensus 466 ~lrv~~~~~~~~~~~~~~~~~~~~~~G~~~dll~~la~~l~f~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~D~~~~~~~ 545 (938)
+||||++.. + ...+-.+++..+.+..+ .+++.+.. ++...++.+|.+|++|+++....
T Consensus 91 ~l~Ig~~~~--~------------~~~~l~~~l~~f~~~~P-~v~l~l~~-------~~~~~~~~~l~~g~~Dlai~~~~ 148 (313)
T 2h98_A 91 TLRIGYVSS--L------------LYGLLPEIIYLFRQQNP-EIHIELIE-------CGTKDQINALKQGKIDLGFGRLK 148 (313)
T ss_dssp EEEEEECGG--G------------GGTTHHHHHHHHHHHCT-TSEEEEEE-------CCHHHHHHHHHHTSCSEEEESSC
T ss_pred EEEEEechH--h------------HHhHHHHHHHHHHHHCC-CeEEEEEe-------CChHHHHHHHHcCCCCEEEEeCC
Confidence 689988841 1 12446678888888875 25566665 55789999999999999986432
Q ss_pred eecCceeeeeeccceecccEEEEEeccC
Q 002309 546 IVTNRTKIVDFSQPYAASGLVVVVPFRK 573 (938)
Q Consensus 546 ~t~~r~~~v~fs~p~~~~~~~~lv~~~~ 573 (938)
... ..+. ..|+....++++++...
T Consensus 149 ~~~---~~l~-~~~L~~~~~~~v~~~~h 172 (313)
T 2h98_A 149 ITD---PAIR-RIMLHKEQLKLAIHKHH 172 (313)
T ss_dssp CCC---TTEE-EEEEEEEEEEEEEETTS
T ss_pred CCC---CCee-EEEeeeCcEEEEEcCCC
Confidence 211 1222 34677778888877654
No 202
>2r9r_B Paddle chimera voltage gated potassium channel KV; voltage sensor, voltage dependent, ION CH shaker, membrane protein, eukaryotic; HET: NAP PGW; 2.40A {Rattus norvegicus} PDB: 3lnm_B* 3lut_B* 2a79_B*
Probab=86.54 E-value=0.67 Score=52.24 Aligned_cols=59 Identities=7% Similarity=0.096 Sum_probs=51.0
Q ss_pred cccchhhhhHHHHHHHhhhhhhhhhhcccCccccchhHHHHHHHHHHHHHHhhhhhhhhhhhhcc
Q 002309 620 KRQVITILWFSLSTLFFAHIAIFVILAEENTVSTLGRLVLIIWLFVVLIINSSYTASLTSILTVQ 684 (938)
Q Consensus 620 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~p~s~s~R~~~~~w~~~~lil~s~Yta~L~s~Lt~~ 684 (938)
..++..++|+++.++..-| +++..|.+..+|++.++++++++++.+.+.|.+.+-+...
T Consensus 373 F~s~~~a~y~~~vT~TTvG------YGDi~P~t~~gr~f~~~~~l~G~~~l~l~iavI~~~f~~~ 431 (514)
T 2r9r_B 373 FPSIPDAFWWAVVSMTTVG------YGDMVPTTIGGKIVGSLCAIAGVLTIALPVPVIVSNFNYF 431 (514)
T ss_dssp CSSHHHHHHHHHHHHTTCC------CSSSCCCSHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHH
T ss_pred ccchhhhhheeeeEEEecc------cCCCCCCCcchHhhehhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3578999999999998777 4577899999999999999999999999999998766543
No 203
>2pfz_A Putative exported protein; extracytoplasmic solute receptor, tripartite ATP independent periplasmic transport, pyroglutamic acid; 1.80A {Bordetella pertussis tohama I}
Probab=85.73 E-value=4.2 Score=42.20 Aligned_cols=87 Identities=6% Similarity=-0.063 Sum_probs=52.7
Q ss_pred CCCCChHHhhhCCCCeeEEeCchHHHHHHHhcccccccccccCCHHHHHHHHhcCCCCCceEEEEecchhHHHH-HhcCC
Q 002309 688 SPINGIESLRKSDDPIGYQEGSFAEYYLSQELNISKSRLVALRTPEDYAKALKDGPGKGGVAAVVDERPYVELF-LSSQC 766 (938)
Q Consensus 688 ~~i~s~~dL~~~~~~i~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~a~i~~~~~~~~~-~~~~~ 766 (938)
.+|++++||. |++|.+. ++.....+ +..+.. .+++ ...|...+|++ |.+|+.........-. ..+-+
T Consensus 128 ~pI~s~~Dlk--G~KiR~~-~~~~~~~~-~~lGa~---pv~~-~~~E~y~ALq~----G~vDg~~~~~~~~~~~~~~ev~ 195 (301)
T 2pfz_A 128 RDIKQVSDMK--GLKWRAY-SPVTAKIA-ELVGAQ---PVTV-QQAELAQAMAT----GVIDSYMSSGSTGFDTKTYEYI 195 (301)
T ss_dssp SCCSSGGGGT--TCEEEES-SHHHHHHH-HHHTCE---EEEC-CGGGHHHHHHT----TSCSEEEECHHHHHHTTGGGTC
T ss_pred CCCCChHHhc--CCEEecC-ChhHHHHH-HHcCCc---ceec-CHHHHHHHHhc----CeeeEEecCccccccccHHHHh
Confidence 6899999999 9999886 55545555 445432 2223 56789999999 8999985543322111 12234
Q ss_pred cEEEeCccccccceEeeecCC
Q 002309 767 SFRIVGQEFTKSGWGFAFPRD 787 (938)
Q Consensus 767 ~l~~~~~~~~~~~~~~~~~k~ 787 (938)
++...... ......+.+.+.
T Consensus 196 ky~~~~~~-~~~~~~~~~n~~ 215 (301)
T 2pfz_A 196 KKFYDTEA-WLPKNAVLVNKK 215 (301)
T ss_dssp CEEECCCC-CCCEEEEEEEHH
T ss_pred hhheeccc-ccceeEEEEcHH
Confidence 55443332 233445666654
No 204
>2pfy_A Putative exported protein; extracytoplasmic solute receptor, tripartite ATP independent periplasmic transport, pyroglutamic acid; 1.95A {Bordetella pertussis tohama I}
Probab=85.42 E-value=4.2 Score=42.18 Aligned_cols=87 Identities=7% Similarity=-0.004 Sum_probs=52.8
Q ss_pred CCCCChHHhhhCCCCeeEEeCchHHHHHHHhcccccccccccCCHHHHHHHHhcCCCCCceEEEEecchhHHH-HHhcCC
Q 002309 688 SPINGIESLRKSDDPIGYQEGSFAEYYLSQELNISKSRLVALRTPEDYAKALKDGPGKGGVAAVVDERPYVEL-FLSSQC 766 (938)
Q Consensus 688 ~~i~s~~dL~~~~~~i~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~a~i~~~~~~~~-~~~~~~ 766 (938)
.+|++++||. |++|.+. ++.....+ +..+.. .+++ ...|...+|++ |.+|+.........- -..+-.
T Consensus 129 ~pI~s~~Dlk--G~KiR~~-~~~~~~~~-~~lGa~---pv~~-~~~E~y~ALq~----G~vDg~~~~~~~~~~~~~~ev~ 196 (301)
T 2pfy_A 129 KPVAALADLK--GTRFRAY-SASTSHMA-ALMGAV---PTTV-QTPEVPQAFST----GVIDAMLTSPATGVDSQAWDYV 196 (301)
T ss_dssp SCCSSGGGGT--TCEEEEC-SHHHHHHH-HHTTSE---EEEC-CGGGHHHHHHT----TSCSBEEECHHHHHHTTGGGTC
T ss_pred CCCCCHHHhC--CCEEeec-ChhHHHHH-HHcCCc---ceec-cHHHHHHHHhc----ceeeeEecCccccccccHHHHh
Confidence 6899999999 9999887 55555555 445432 2223 56789999999 899998544332211 112234
Q ss_pred cEEEeCccccccceEeeecCC
Q 002309 767 SFRIVGQEFTKSGWGFAFPRD 787 (938)
Q Consensus 767 ~l~~~~~~~~~~~~~~~~~k~ 787 (938)
++...... ......+.+.+.
T Consensus 197 k~~~~~~~-~~~~~~~~~n~~ 216 (301)
T 2pfy_A 197 KYYYDAQA-FIPQSFVIANKR 216 (301)
T ss_dssp CEEEECCC-CCCEEEEEEEHH
T ss_pred hhhccccc-ccceeeEEEcHH
Confidence 55444332 233455666664
No 205
>2hzl_A Trap-T family sorbitol/mannitol transporter, periplasmic binding protein, SMOM; trap transporter, periplasmic subunit, ligand binding; 1.40A {Rhodobacter sphaeroides 2} PDB: 2hzk_A
Probab=85.31 E-value=2.3 Score=45.60 Aligned_cols=87 Identities=17% Similarity=0.179 Sum_probs=54.1
Q ss_pred CCCCChHHhhhCCCCeeEEeCchHHHHHHHhcccccccccccCCHHHHHHHHhcCCCCCceEEEEecchhHHH--HHhcC
Q 002309 688 SPINGIESLRKSDDPIGYQEGSFAEYYLSQELNISKSRLVALRTPEDYAKALKDGPGKGGVAAVVDERPYVEL--FLSSQ 765 (938)
Q Consensus 688 ~~i~s~~dL~~~~~~i~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~a~i~~~~~~~~--~~~~~ 765 (938)
.+|++++||. |++|.+. + .....+ +..+... +++ ...|...+|++ |.+|+.....+...+ -..+-
T Consensus 163 ~pI~s~~DLk--G~KiR~~-~-~~~~~~-~~lGa~p---v~~-~~~e~y~ALq~----G~VDg~~~~~p~~~~~~~~~ev 229 (365)
T 2hzl_A 163 REINTVADMQ--GLKMRVG-G-FAGKVM-ERLGVVP---QQI-AGGDIYPALEK----GTIDATEWVGPYDDEKLGFFKV 229 (365)
T ss_dssp SCCCSTGGGT--TCEEECC-T-THHHHH-HTTTCEE---ECC-CTTSHHHHHHH----TSCSEECCSCHHHHHHHTGGGT
T ss_pred CCCCChHHhC--CCEEecC-C-cHHHHH-HHcCCcc---eec-CHHHHHHHHhC----CCcceeeccCccchhhcChHHh
Confidence 6899999998 9999887 5 345555 4455431 222 45578889999 899998866555432 12233
Q ss_pred CcEEEeCc-cccccceEeeecCC
Q 002309 766 CSFRIVGQ-EFTKSGWGFAFPRD 787 (938)
Q Consensus 766 ~~l~~~~~-~~~~~~~~~~~~k~ 787 (938)
+++..... ........+.++++
T Consensus 230 ~k~~~~~~~~~~~~~~~~v~n~~ 252 (365)
T 2hzl_A 230 APYYYYPGWWEGGPTVHFMFNKS 252 (365)
T ss_dssp CCEEEECBTTCSSCEEEEEEEHH
T ss_pred hheeeccCccccccceEEEEcHH
Confidence 45555433 22223456777764
No 206
>3s99_A Basic membrane lipoprotein; ssgcid, structural genomics, SEA structural genomics center for infectious disease, adenine; HET: ADE; 2.05A {Brucella melitensis biovar abortus}
Probab=84.38 E-value=3.4 Score=43.99 Aligned_cols=89 Identities=10% Similarity=-0.036 Sum_probs=68.0
Q ss_pred EEEEEEeeCCCcchhHHHHHHHHHHHHHhcCCCCCCCCEEEEEEccCCCChHHHHHHHHHHHhcCcEEEEcCCChhHHHH
Q 002309 32 VNVGALFTLDSTIGRVAKIAIEEAVKDVNSNSSILHGTKLNITMQSSNCSGFIGMVEALRFMETDIVAIIGPQCSTVAHI 111 (938)
Q Consensus 32 i~IG~i~~~~~~~g~~~~~a~~~Av~~iN~~~~il~g~~l~~~~~D~~~~~~~a~~~a~~li~~~V~aviGp~~s~~~~~ 111 (938)
=+||.+.....+.-.....|+..+++++| |..++.+.+..+-.|+..+.+.+..|+++++.+|+...... .
T Consensus 150 ~kIGfVgg~~~p~v~~~~~GF~~G~k~~n------p~i~v~~~~~g~~~d~~kg~~~a~~l~~~G~DvIf~~~d~~---G 220 (356)
T 3s99_A 150 GIAGYIGSVPVPEVVQGINSFMLGAQSVN------PDFRVKVIWVNSWFDPGKEADAAKALIDQGVDIITQHTDST---A 220 (356)
T ss_dssp CEEEEEECCCCHHHHHHHHHHHHHHHTTC------TTCEEEEEECSSSCCHHHHHHHHHHHHHTTCSEEEESSSSS---H
T ss_pred CEEEEECCCccHHHHHHHHHHHHHHHHHC------CCCEEEEEECCCCCChHHHHHHHHHHHhCCCcEEEECCCch---H
Confidence 47899987765444556899999999887 45677777776667999999999999999999998765553 3
Q ss_pred HHHhhccCCccEEEcccC
Q 002309 112 VSYVSNELQVPLLSFGVT 129 (938)
Q Consensus 112 va~~~~~~~iP~Is~~~~ 129 (938)
+...+...++..|.+...
T Consensus 221 v~~aa~e~Gv~vIG~D~d 238 (356)
T 3s99_A 221 AIQVAHDRGIKAFGQASD 238 (356)
T ss_dssp HHHHHHHTTCEEEEEESC
T ss_pred HHHHHHHcCCEEEEEcCc
Confidence 455666788988887544
No 207
>3kos_A HTH-type transcriptional activator AMPR; alpha-beta sandwich, DNA-binding, transcription regulation; HET: MES; 1.83A {Citrobacter freundii} PDB: 3kot_A
Probab=84.31 E-value=8.1 Score=37.17 Aligned_cols=105 Identities=9% Similarity=0.037 Sum_probs=60.4
Q ss_pred CChHHhhhCCCC-eeEEeCchHHHHHHHhccccc---ccccccCCHHHHHHHHhcCCCCCceEEEEecchhHHHHHhcCC
Q 002309 691 NGIESLRKSDDP-IGYQEGSFAEYYLSQELNISK---SRLVALRTPEDYAKALKDGPGKGGVAAVVDERPYVELFLSSQC 766 (938)
Q Consensus 691 ~s~~dL~~~~~~-i~~~~~s~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~l~~~~~~g~~~a~i~~~~~~~~~~~~~~ 766 (938)
-+++||. +.+ +.+..+.....++.+...... ......++.+...+.+.. |..-+++-+.....+......
T Consensus 96 ~~~~~L~--~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~----g~Gi~~lp~~~~~~~~~~~~l 169 (219)
T 3kos_A 96 QTPADIL--KFPLLRSYRRDEWALWMQTVGEAPPSPTHNVMVFDSSVTMLEAAQA----GMGVAIAPVRMFTHLLSSERI 169 (219)
T ss_dssp SSGGGGG--GSCEEEESCTTHHHHHHHHTTCCCCCTTSCEEEESCHHHHHHHHHT----TSCBEEEEGGGCHHHHHTTSS
T ss_pred CCHHHHh--cCceeccCCccCHHHHHHHcCCCCCccccceeEEccHHHHHHHHHc----CCCeEeehHHhhHHHHHcCCe
Confidence 4678887 444 444455556666643321111 123457888999999998 666677766555544333222
Q ss_pred cEEEeCccccccceEeeecCCCcchhhHHHHHHhhh
Q 002309 767 SFRIVGQEFTKSGWGFAFPRDSPLAVDLSSAILELA 802 (938)
Q Consensus 767 ~l~~~~~~~~~~~~~~~~~k~spl~~~i~~~il~l~ 802 (938)
. ...........++++.+++.+....+...+..+.
T Consensus 170 ~-~~~~~~~~~~~~~l~~~~~~~~~~~~~~f~~~l~ 204 (219)
T 3kos_A 170 V-QPFLTQIDLGSYWITRLQSRPETPAMREFSRWLT 204 (219)
T ss_dssp B-CCCCCCBCSCEEEEEEETTSCCCHHHHHHHHHHH
T ss_pred e-ccccCCccCCcEEEEecccccCCHHHHHHHHHHH
Confidence 2 1222233345688889988776666666555443
No 208
>3ukm_A Potassium channel subfamily K member 1; membrane protein, eukaryotic, two-pore DO potassium channel, K2P channel, membrane; HET: UND; 3.40A {Homo sapiens}
Probab=84.03 E-value=1 Score=45.77 Aligned_cols=70 Identities=9% Similarity=0.087 Sum_probs=55.1
Q ss_pred ccchhhhhHHHHHHHhhhhhhhhhhcccCccccc-------hhHHHHHHHHHHHHHHhhhhhhhhhhhhcccccCCCCCh
Q 002309 621 RQVITILWFSLSTLFFAHIAIFVILAEENTVSTL-------GRLVLIIWLFVVLIINSSYTASLTSILTVQQLYSPINGI 693 (938)
Q Consensus 621 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~p~s~s-------~R~~~~~w~~~~lil~s~Yta~L~s~Lt~~~~~~~i~s~ 693 (938)
.++.+++||++-++..-| +++..|.+.. +|++.++|.++++.+++...+.+++.+...+....+..-
T Consensus 200 ~s~~da~y~~~iTltTvG------yGD~~p~t~~~~~~~~l~r~~~~~~il~Gl~~~~~~~~~i~~~~~~~~l~~~~~~~ 273 (280)
T 3ukm_A 200 WNFLESFYFCFISLSTIG------LGDYVPGEGYNQKFRELYKIGITCYLLLGLIAMLVVLETFCELHELKKFRKMFYVK 273 (280)
T ss_dssp CCHHHHHHHHHHHHTTCC------CCSCCSSCSSSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHTSHHHHHHHHTTC--
T ss_pred Cchhhhhhheeeeeeccc------CCCCCCCCCcccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 357899999999998877 5677787764 599999999999999999999999998887766655444
Q ss_pred HHh
Q 002309 694 ESL 696 (938)
Q Consensus 694 ~dL 696 (938)
+|+
T Consensus 274 ~~~ 276 (280)
T 3ukm_A 274 KDK 276 (280)
T ss_dssp ---
T ss_pred hhh
Confidence 443
No 209
>2eq5_A 228AA long hypothetical hydantoin racemase; structural genomics, NPPSFA, national project on P structural and functional analyses; 2.20A {Pyrococcus horikoshii}
Probab=84.00 E-value=6 Score=39.01 Aligned_cols=115 Identities=17% Similarity=0.138 Sum_probs=65.1
Q ss_pred HHHHHhcCcEEEEcCCChhHHHHHHHhhccCCccEEEcccCCCCCCCCCCCceEEecCCchHHHHHHHHHHHhcCCcEEE
Q 002309 89 ALRFMETDIVAIIGPQCSTVAHIVSYVSNELQVPLLSFGVTDPTLSSLQYPFFVRTTQSDSYQMTAVAEMVSYYGWNAVS 168 (938)
Q Consensus 89 a~~li~~~V~aviGp~~s~~~~~va~~~~~~~iP~Is~~~~~~~l~~~~~p~~~r~~ps~~~~~~ai~~~l~~~~w~~va 168 (938)
+..+.+.++.+|+-+-++. ..+..+-+..++|++.. .++.++.....+ ++|+
T Consensus 68 ~~~l~~~g~d~iviaCnta--~~~~~l~~~~~iPvi~i-------------------------~~~~~~~a~~~~-~rig 119 (228)
T 2eq5_A 68 AKEFEREGVDAIIISCAAD--PAVEKVRKLLSIPVIGA-------------------------GSSVSALALAYG-RRVG 119 (228)
T ss_dssp HHHHHHTTCSEEEECSTTC--TTHHHHHHHCSSCEEEH-------------------------HHHHHHHHHTTC-SSEE
T ss_pred HHHHHHCCCCEEEEeCCch--HHHHHHHHhCCCCEeCc-------------------------cHHHHHHHHHhC-CeEE
Confidence 3344455888887666555 44555556678998863 122222223456 8899
Q ss_pred EEEEcCccccchHHHHHHHH-hhcceEEEEEee--c-CCCCCCChhhHHHHHHHHhcCCceEEEEEeChhh
Q 002309 169 VIFVDNEYGRNGVSALNDKL-AERRCRISYKSG--I-PPESGVNTGYVMDLLVKVALMESRVIVLHVSPSL 235 (938)
Q Consensus 169 ii~~d~~~g~~~~~~l~~~l-~~~g~~v~~~~~--~-~~~~~~~~~d~~~~l~~lk~~~~~viv~~~~~~~ 235 (938)
++....... ..+.+.+ ++.|..+..... + ..........+...++++.+.++|+||+.|..-.
T Consensus 120 Vlat~~t~~----~~~~~~~~~~~g~~~~~~~~~~v~~~~~~~~~~~l~~~~~~l~~~~~d~IvLgCT~~~ 186 (228)
T 2eq5_A 120 VLNLTEETP----KVIRSILGNNLIAEDHPSGVSNTLDLLTDWGRREVINAAKRLKEKGVEVIALGCTGMS 186 (228)
T ss_dssp EECSSSCCC----HHHHHHHGGGEEEEECCTTCCSGGGGGSHHHHHHHHHHHHHHHHTTCSEEEECCTHHH
T ss_pred EEecCcccH----HHHHHHHHHHhCccccCCceeeHHHhcChHHHHHHHHHHHHHHHcCCCEEEECCCCcc
Confidence 998654322 3467778 777766421100 0 0000001234556666776678999999887654
No 210
>1uth_A LYSR-type regulatory protein; transcription regulation, transcriptional regulator; 2.2A {Burkholderia SP} SCOP: c.94.1.1 PDB: 1utb_A 1utb_B 1uth_B 2uyf_A 2uye_A
Probab=83.98 E-value=9.2 Score=39.65 Aligned_cols=83 Identities=11% Similarity=0.123 Sum_probs=52.5
Q ss_pred ceeEEEecccccccceeeeccCCcceEeeeHHHHHHHHHhCCCCccEEEEecCCCCCCCChhHHHHhhhcceecEEeccE
Q 002309 465 KLLKIGVPNRASYREFVSKVRGSDMFQGFCIDVFTAAVNLLPYAVPYQFVAFGDGHKNPSYTQLVDSITTGVFDAVVGDI 544 (938)
Q Consensus 465 ~~lrv~~~~~~~~~~~~~~~~~~~~~~G~~~dll~~la~~l~f~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~D~~~~~~ 544 (938)
+.||||+... . ...+...++..+.+..+ .+++.+.. ++...++.+|.+|++|+++...
T Consensus 105 ~~l~Ig~~~~--~------------~~~~l~~~l~~f~~~~P-~v~l~l~~-------~~~~~~~~~l~~g~~Dl~i~~~ 162 (315)
T 1uth_A 105 RTFNLAMTDI--G------------EMYFMPPLMEALAQRAP-HIQISTLR-------PNAGNLKEDMESGAVDLALGLL 162 (315)
T ss_dssp CEEEEECCHH--H------------HHHHHHHHHHHHHHHCT-TCEEEEEC-------TTSSCHHHHHHHTSCCEEEECC
T ss_pred eEEEEEechH--H------------HHHHHHHHHHHHHHHCC-CcEEEEEe-------CCcccHHHHHHCCCCCEEEecC
Confidence 4789988631 0 12345567788888775 25566654 4466789999999999998532
Q ss_pred eeecCceeeeeeccceecccEEEEEeccC
Q 002309 545 TIVTNRTKIVDFSQPYAASGLVVVVPFRK 573 (938)
Q Consensus 545 ~~t~~r~~~v~fs~p~~~~~~~~lv~~~~ 573 (938)
... ...+. +.|+....++++++...
T Consensus 163 ~~~---~~~l~-~~~l~~~~~~~v~~~~h 187 (315)
T 1uth_A 163 PEL---QTGFF-QRRLFRHRYVCMFRKDH 187 (315)
T ss_dssp TTC---CTTEE-EEEEEEECEEEEEETTC
T ss_pred CCC---CCCce-EEEeeccceEEEEeCCC
Confidence 211 11222 34677777888877544
No 211
>3hhf_B Transcriptional regulator, LYSR family; transcription factor, structur genomics, oxford protein production facility, OPPF; 2.30A {Neisseria meningitidis serogroup B}
Probab=83.48 E-value=1.8 Score=41.73 Aligned_cols=81 Identities=9% Similarity=0.023 Sum_probs=49.1
Q ss_pred CceeEEEecccccccceeeeccCCcceEeeeHHHHHHHHHhCCCCccEEEEecCCCCCCCChhHHHHhhhcceecEEecc
Q 002309 464 GKLLKIGVPNRASYREFVSKVRGSDMFQGFCIDVFTAAVNLLPYAVPYQFVAFGDGHKNPSYTQLVDSITTGVFDAVVGD 543 (938)
Q Consensus 464 g~~lrv~~~~~~~~~~~~~~~~~~~~~~G~~~dll~~la~~l~f~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~D~~~~~ 543 (938)
..+||||+... -...+-.+++..+.++.+- +++.+.. . +. +.+|.+|++|+++..
T Consensus 6 ~g~l~Ig~~~~--------------~~~~~l~~~l~~f~~~~P~-v~l~i~~-------~--~~-~~~l~~g~~D~~i~~ 60 (213)
T 3hhf_B 6 QGVLSVDSAMP--------------MVLHLLAPLAAKFNERYPH-IRLSLVS-------S--EG-YINLIERKVDIALRA 60 (213)
T ss_dssp CEEEEEEECHH--------------HHHHTHHHHHHHHHHHCTT-EEEEEEC-------C--ST-THHHHTTSSSEEEEC
T ss_pred CceEEEecCHH--------------HHHHHHHHHHHHHHHHCCC-cEEEEEe-------C--Cc-HHHHHhCCccEEEEE
Confidence 35788888741 1123566788888888752 4555542 1 11 345889999999864
Q ss_pred EeeecCceeeeeeccceecccEEEEEeccC
Q 002309 544 ITIVTNRTKIVDFSQPYAASGLVVVVPFRK 573 (938)
Q Consensus 544 ~~~t~~r~~~v~fs~p~~~~~~~~lv~~~~ 573 (938)
.... ...+. +.++....+++++++..
T Consensus 61 ~~~~---~~~~~-~~~l~~~~~~~v~~~~~ 86 (213)
T 3hhf_B 61 GELD---DSGLR-ARHLFDSRFRVIASPEY 86 (213)
T ss_dssp C--C---CSSEE-EEEEEEECEEEEECHHH
T ss_pred ecCC---Cccce-EEeeecceEEEEeCHHH
Confidence 3222 12222 35777888888887543
No 212
>1atg_A MODA, periplasmic molybdate-binding protein; tungstate, ABC transporter; 1.20A {Azotobacter vinelandii} SCOP: c.94.1.1
Probab=82.64 E-value=4.3 Score=39.57 Aligned_cols=71 Identities=13% Similarity=0.018 Sum_probs=43.1
Q ss_pred eHHHHHHHHHhCCCCccEEEEecCCCCCCCChhHHHHhhhcce-ecEEeccEeeecC---ceeeee--eccceecccEEE
Q 002309 494 CIDVFTAAVNLLPYAVPYQFVAFGDGHKNPSYTQLVDSITTGV-FDAVVGDITIVTN---RTKIVD--FSQPYAASGLVV 567 (938)
Q Consensus 494 ~~dll~~la~~l~f~~~~~~~~~~~~~~~~~~~~~i~~l~~g~-~D~~~~~~~~t~~---r~~~v~--fs~p~~~~~~~~ 567 (938)
.-++++.+.++-|.++ .+.. ++-..++..|.+|+ +|+++..-....+ ....+. -..|+....+++
T Consensus 14 l~~~~~~F~~~p~i~v--~~~~-------~~s~~l~~~l~~g~~~Dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl 84 (231)
T 1atg_A 14 LEQLAGQFAKQTGHAV--VISS-------GSSGPVYAQIVNGAPYNVFFSADEKSPEKLDNQGFALPGSRFTYAIGKLVL 84 (231)
T ss_dssp HHHHHHHHHHHHCCCE--EEEE-------ECHHHHHHHHHTTCCCSEEECSSSHHHHHHHHTTCBCTTCCEEEEECCEEE
T ss_pred HHHHHHHHHhccCCeE--EEEE-------CCcHHHHHHHHcCCCCCEEEeCChhHHHHHHhcCCCcCCceeEeeeeeEEE
Confidence 3467777777767554 4433 34678899999998 9998753211111 111111 246778888888
Q ss_pred EEeccC
Q 002309 568 VVPFRK 573 (938)
Q Consensus 568 lv~~~~ 573 (938)
++++..
T Consensus 85 v~~~~~ 90 (231)
T 1atg_A 85 WSAKPG 90 (231)
T ss_dssp EESSTT
T ss_pred EEcCCC
Confidence 887654
No 213
>2i49_A Bicarbonate transporter; alpha-beta protein, C-clamp, ABC transporter, periplasmic SO binding protein, bicarbonate-binding protein; 1.35A {Synechocystis SP} PDB: 2i48_A 2i4b_A 2i4c_A
Probab=82.59 E-value=6.1 Score=43.34 Aligned_cols=106 Identities=12% Similarity=0.219 Sum_probs=61.2
Q ss_pred hHHh-hhCCC--CeeEE-eCchHHHHH---HHhccccc---ccccccCCHHHHHHHHhcCCCCCceEEEEecchhHHHHH
Q 002309 693 IESL-RKSDD--PIGYQ-EGSFAEYYL---SQELNISK---SRLVALRTPEDYAKALKDGPGKGGVAAVVDERPYVELFL 762 (938)
Q Consensus 693 ~~dL-~~~~~--~i~~~-~~s~~~~~~---~~~~~~~~---~~~~~~~~~~~~~~~l~~~~~~g~~~a~i~~~~~~~~~~ 762 (938)
++|| .+.|+ +|++. .++....++ .+..++.. .+++.+ .+.+...++.+ |.+||++...++.....
T Consensus 153 i~dL~k~~GK~~~Iav~~~gs~~~~~l~~~L~~~Gl~p~~DV~~v~~-~~~~~~~aL~~----G~iDa~~~~eP~~~~a~ 227 (429)
T 2i49_A 153 IKGFNKTNGRKFKAAHTFPNVNQDFWIRYWFAAGGVDPDTDIDLLAV-PPAETVQGMRN----GTMDAFSTGDPWPYRIV 227 (429)
T ss_dssp HHTHHHHHSSCCEEEESSTTSHHHHHHHHHHHHTTCCTTTTSEEEEC-CHHHHHHHHHH----TCCCEEEEETTHHHHHH
T ss_pred HHHHHHhCCCCcEEEEeCCCCHHHHHHHHHHHhcCCCCCCcEEEEEC-ChHHHHHHHHc----CCccEEEeccchHHHHH
Confidence 6888 64566 89986 566443322 13345543 234444 67888999999 89999998888776655
Q ss_pred hcCCcEEEe--Ccccccc-ceEeeecCC----Cc-----chhhHHHHHHhhhc
Q 002309 763 SSQCSFRIV--GQEFTKS-GWGFAFPRD----SP-----LAVDLSSAILELAE 803 (938)
Q Consensus 763 ~~~~~l~~~--~~~~~~~-~~~~~~~k~----sp-----l~~~i~~~il~l~e 803 (938)
.+.....+. ++..... ...++++++ .| +...+.++..++.+
T Consensus 228 ~~g~g~~~~~~~~~~~~~~~~vl~~~~~~~~~~Pe~v~~~~~A~~~A~~~~~~ 280 (429)
T 2i49_A 228 TENIGYMAGLTAQIWPYHPEEYLAIRADWVDKNPKATKALLKGIMEAQQWIDD 280 (429)
T ss_dssp HTTSCEEEEEHHHHSTTCCCCEEEEEHHHHHHCHHHHHHHHHHHHHHHHHHTS
T ss_pred HCCCCEEEEechHhcCCCceEEEEECHHHHHHCHHHHHHHHHHHHHHHHHHhC
Confidence 554332222 2222222 245666653 34 44455555555655
No 214
>1sw5_A Osmoprotection protein (PROX); binding-protein, compatible solutes, cation-PI interactions, classical hydrogen bonds, protein binding; 1.80A {Archaeoglobus fulgidus} SCOP: c.94.1.1 PDB: 1sw4_A 1sw1_A 1sw2_A 3mam_A*
Probab=81.41 E-value=7 Score=39.85 Aligned_cols=104 Identities=13% Similarity=0.079 Sum_probs=55.5
Q ss_pred CCCChHHhhhCCCCeeEEeCchHHHH--------HHHhcccccccccccCCHHHHHHHHhcCCCCCceEEEEecchhHHH
Q 002309 689 PINGIESLRKSDDPIGYQEGSFAEYY--------LSQELNISKSRLVALRTPEDYAKALKDGPGKGGVAAVVDERPYVEL 760 (938)
Q Consensus 689 ~i~s~~dL~~~~~~i~~~~~s~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~a~i~~~~~~~~ 760 (938)
.|+|++||. ++...+..|+..+.+ +.+.+++....+... +..+...++.+ |+++++..-.+....
T Consensus 124 ~i~si~DL~--g~~~~~~~g~~~~~~~~~~g~~~~~~~yGl~~~~~~~~-~~~~~~~Al~~----g~vd~~~~~~p~~~~ 196 (275)
T 1sw5_A 124 GVEKISDLA--EFADQLVFGSDPEFASRPDGLPQIKKVYGFEFKEVKQM-EPTLMYEAIKN----KQVDVIPAYTTDSRV 196 (275)
T ss_dssp TCCBGGGGT--TTGGGCEEEECHHHHHSTTSHHHHHHHHTCCCSEEEEC-CGGGHHHHHHT----TSCSEEEEETTCHHH
T ss_pred CCCcHHHHH--hhhcceEeccCcccccccchHHHHHHhcCCCcccccCC-CHHHHHHHHHc----CCCeEEEEeCCCcch
Confidence 789999998 442222222111110 224455543344444 56678899999 899998887765543
Q ss_pred HHhcCCcEEEeCc---cccccceEeeecCCCcchhhHHHHHHhhh
Q 002309 761 FLSSQCSFRIVGQ---EFTKSGWGFAFPRDSPLAVDLSSAILELA 802 (938)
Q Consensus 761 ~~~~~~~l~~~~~---~~~~~~~~~~~~k~spl~~~i~~~il~l~ 802 (938)
. + .++..+.. .+.......+++++..=.+.+-..|.++.
T Consensus 197 ~--~-~~l~~L~d~~~~~~~~~~~~v~~~~~~~~P~~~~~l~~l~ 238 (275)
T 1sw5_A 197 D--L-FNLKILEDDKGALPPYDAIIIVNGNTAKDEKLISVLKLLE 238 (275)
T ss_dssp H--H-TTEEECBCTTCCSCCCEEEEEECTTGGGCHHHHHHHHTTT
T ss_pred h--c-CCeEEccCCcccCCccceeeeeehhhccChHHHHHHHHHH
Confidence 2 2 25555543 22233345566655320034445555553
No 215
>2q5c_A NTRC family transcriptional regulator; structural genomics, protein structure initiative; HET: SO4 GOL; 1.49A {Clostridium acetobutylicum atcc 824}
Probab=81.28 E-value=38 Score=32.22 Aligned_cols=158 Identities=15% Similarity=0.134 Sum_probs=97.1
Q ss_pred EEEEEEeeCCCcchhHHHHHHHHHHHHHhcCCCCCCCCEEEEEEccCCCChHHHHHHHHHHHhcCcEEEEcCCChhHHHH
Q 002309 32 VNVGALFTLDSTIGRVAKIAIEEAVKDVNSNSSILHGTKLNITMQSSNCSGFIGMVEALRFMETDIVAIIGPQCSTVAHI 111 (938)
Q Consensus 32 i~IG~i~~~~~~~g~~~~~a~~~Av~~iN~~~~il~g~~l~~~~~D~~~~~~~a~~~a~~li~~~V~aviGp~~s~~~~~ 111 (938)
.+|.++.|... ...-++-..++.+ ..+.+.. ++-..++..+.++ ++++.+||.-. .++..
T Consensus 5 ~~I~~iapy~~-----l~~~~~~i~~e~~--------~~i~i~~----~~l~~~v~~a~~~-~~~~dVIISRG--gta~~ 64 (196)
T 2q5c_A 5 LKIALISQNEN-----LLNLFPKLALEKN--------FIPITKT----ASLTRASKIAFGL-QDEVDAIISRG--ATSDY 64 (196)
T ss_dssp CEEEEEESCHH-----HHHHHHHHHHHHT--------CEEEEEE----CCHHHHHHHHHHH-TTTCSEEEEEH--HHHHH
T ss_pred CcEEEEEccHH-----HHHHHHHHHhhhC--------CceEEEE----CCHHHHHHHHHHh-cCCCeEEEECC--hHHHH
Confidence 57888887642 2333333444432 2344433 3456788889898 88999999522 33333
Q ss_pred HHHhhccCCccEEEcccCCCCCCCCCCCceEEecCCchHHHHHHHHHHHhcCCcEEEEEEEcCccccchHHHHHHHHhhc
Q 002309 112 VSYVSNELQVPLLSFGVTDPTLSSLQYPFFVRTTQSDSYQMTAVAEMVSYYGWNAVSVIFVDNEYGRNGVSALNDKLAER 191 (938)
Q Consensus 112 va~~~~~~~iP~Is~~~~~~~l~~~~~p~~~r~~ps~~~~~~ai~~~l~~~~w~~vaii~~d~~~g~~~~~~l~~~l~~~ 191 (938)
+. +..++|+|.. ..+..+..+++...-+ ++ +++++|.-.+. ...+..+.+.+
T Consensus 65 lr---~~~~iPVV~I------------------~~s~~Dil~al~~a~~-~~-~kIavvg~~~~--~~~~~~~~~ll--- 116 (196)
T 2q5c_A 65 IK---KSVSIPSISI------------------KVTRFDTMRAVYNAKR-FG-NELALIAYKHS--IVDKHEIEAML--- 116 (196)
T ss_dssp HH---TTCSSCEEEE------------------CCCHHHHHHHHHHHGG-GC-SEEEEEEESSC--SSCHHHHHHHH---
T ss_pred HH---HhCCCCEEEE------------------cCCHhHHHHHHHHHHh-hC-CcEEEEeCcch--hhHHHHHHHHh---
Confidence 33 3457999963 2344556677766644 33 48998875443 22455666665
Q ss_pred ceEEEEEeecCCCCCCChhhHHHHHHHHhcCCceEEEEEeChhhHHHHHHHHHHcCCC
Q 002309 192 RCRISYKSGIPPESGVNTGYVMDLLVKVALMESRVIVLHVSPSLGFQVFSVAKYLGMM 249 (938)
Q Consensus 192 g~~v~~~~~~~~~~~~~~~d~~~~l~~lk~~~~~viv~~~~~~~~~~~l~~a~~~g~~ 249 (938)
|.++... .+. +.++....++++++.+.++||-.+. ..+.|++.|+.
T Consensus 117 ~~~i~~~-~~~-----~~~e~~~~i~~l~~~G~~vvVG~~~------~~~~A~~~Gl~ 162 (196)
T 2q5c_A 117 GVKIKEF-LFS-----SEDEITTLISKVKTENIKIVVSGKT------VTDEAIKQGLY 162 (196)
T ss_dssp TCEEEEE-EEC-----SGGGHHHHHHHHHHTTCCEEEECHH------HHHHHHHTTCE
T ss_pred CCceEEE-EeC-----CHHHHHHHHHHHHHCCCeEEECCHH------HHHHHHHcCCc
Confidence 4455432 221 3678999999999999999776432 35677888874
No 216
>2fqx_A Membrane lipoprotein TMPC; ABC transport system, ligand-binding protein, guanosine, TP0319, transport protein; HET: GMP; 1.70A {Treponema pallidum} PDB: 2fqw_A* 2fqy_A*
Probab=80.21 E-value=21 Score=37.01 Aligned_cols=125 Identities=10% Similarity=0.104 Sum_probs=75.8
Q ss_pred EEEEEeeCCCcchhHHHHHHHHHHHHHhcCCCCCCCCEEEEEEccCCCChHHHHHHHHHHHhcCcEEEEcCCChhHHHHH
Q 002309 33 NVGALFTLDSTIGRVAKIAIEEAVKDVNSNSSILHGTKLNITMQSSNCSGFIGMVEALRFMETDIVAIIGPQCSTVAHIV 112 (938)
Q Consensus 33 ~IG~i~~~~~~~g~~~~~a~~~Av~~iN~~~~il~g~~l~~~~~D~~~~~~~a~~~a~~li~~~V~aviGp~~s~~~~~v 112 (938)
+||.+.............|+..++++.|- ..++.+.+..+-.++..+.+.+.+++++++.+|+...... +..+
T Consensus 131 ~Ig~i~g~~~~~~~~r~~Gf~~~~~~~~~------~~~~~~~~~~~~~~~~~g~~~a~~ll~~~~daI~~~~d~~-a~Gv 203 (318)
T 2fqx_A 131 AVGFIVGMELGMMPLFEAGFEAGVKAVDP------DIQVVVEVANTFSDPQKGQALAAKLYDSGVNVIFQVAGGT-GNGV 203 (318)
T ss_dssp EEEEEESCCSTTTHHHHHHHHHHHHHHCT------TCEEEEEECSCSSCHHHHHHHHHHHHHTTCCEEEEECGGG-HHHH
T ss_pred EEEEEeCcccHHHHHHHHHHHHHHHHHCC------CCEEEEEEccCccCHHHHHHHHHHHHHCCCcEEEECCCCC-chHH
Confidence 67877665433345668999999998862 3555555444334778888889999998899998755443 2333
Q ss_pred HHhhcc-----CCccEEEcccCCCCCCCC---CCCceEEecCCchHHHHHHHHHHHhcCC
Q 002309 113 SYVSNE-----LQVPLLSFGVTDPTLSSL---QYPFFVRTTQSDSYQMTAVAEMVSYYGW 164 (938)
Q Consensus 113 a~~~~~-----~~iP~Is~~~~~~~l~~~---~~p~~~r~~ps~~~~~~ai~~~l~~~~w 164 (938)
...+.. .++.+|.+.........- ..|.+-.+..+-...+...++.+..=.|
T Consensus 204 ~~a~~e~g~~P~dv~viG~D~~~~~~~~~~~~~~~~LTsv~~~~~~~~~~a~~~~~~g~~ 263 (318)
T 2fqx_A 204 IKEARDRRLNGQDVWVIGVDRDQYMDGVYDGSKSVVLTSMVKRADVAAERISKMAYDGSF 263 (318)
T ss_dssp HHHHHHHHHTTCCCEEEEEESCCGGGGBCSSSCBSEEEEEEECHHHHHHHHHHHHHHTCC
T ss_pred HHHHHhhhhccCCcEEEEEecchhhhccccCCCCeEEEEEEEEHHHHHHHHHHHHHcCCC
Confidence 333333 688889875533221100 2244555555555566666666554445
No 217
>3bfj_A 1,3-propanediol oxidoreductase; opportunistic pathogens, decamer, structural genomics,struct proteomics in europe, spine; 2.70A {Klebsiella pneumoniae}
Probab=79.55 E-value=8.6 Score=41.46 Aligned_cols=100 Identities=15% Similarity=0.045 Sum_probs=69.2
Q ss_pred CceEEecCCchHHHHHHHHHHHhcCCcEEEEEEEcCcccc--chHHHHHHHHhhcceEEEEEeecCCCCCCChhhHHHHH
Q 002309 139 PFFVRTTQSDSYQMTAVAEMVSYYGWNAVSVIFVDNEYGR--NGVSALNDKLAERRCRISYKSGIPPESGVNTGYVMDLL 216 (938)
Q Consensus 139 p~~~r~~ps~~~~~~ai~~~l~~~~w~~vaii~~d~~~g~--~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~d~~~~l 216 (938)
|+-+...+... ..+.++++.++.+++.+|++...+.. +..+.+.+.|++.|+++..-..+.++ .+.+.+...+
T Consensus 11 p~~i~~G~g~~---~~l~~~l~~~g~~~~livtd~~~~~~~~g~~~~v~~~L~~~g~~~~~~~~~~~~--p~~~~v~~~~ 85 (387)
T 3bfj_A 11 PNVNFFGPNAI---SVVGERCQLLGGKKALLVTDKGLRAIKDGAVDKTLHYLREAGIEVAIFDGVEPN--PKDTNVRDGL 85 (387)
T ss_dssp CSEEEESTTGG---GGHHHHHHHTTCSEEEEECCTTTC--CCSSHHHHHHHHHHTTCEEEEECCCCSS--CBHHHHHHHH
T ss_pred CCeEEECCCHH---HHHHHHHHHcCCCEEEEEECcchhhccchHHHHHHHHHHHcCCeEEEECCccCC--CCHHHHHHHH
Confidence 44444444432 33566777788899999987665555 47899999999999886433334444 4577888889
Q ss_pred HHHhcCCceEEEEEeCh--hhHHHHHHHH
Q 002309 217 VKVALMESRVIVLHVSP--SLGFQVFSVA 243 (938)
Q Consensus 217 ~~lk~~~~~viv~~~~~--~~~~~~l~~a 243 (938)
+.+++.++|+||-.+.+ -++..++...
T Consensus 86 ~~~~~~~~d~IIavGGGsv~D~aK~iA~~ 114 (387)
T 3bfj_A 86 AVFRREQCDIIVTVGGGSPHDCGKGIGIA 114 (387)
T ss_dssp HHHHHTTCCEEEEEESHHHHHHHHHHHHH
T ss_pred HHHHhcCCCEEEEeCCcchhhHHHHHHHH
Confidence 99999999999977654 4666666654
No 218
>3ox4_A Alcohol dehydrogenase 2; iron, NAD, oxidoreductase; HET: NAD; 2.00A {Zymomonas mobilis} PDB: 3owo_A*
Probab=79.28 E-value=3.3 Score=44.68 Aligned_cols=91 Identities=11% Similarity=0.050 Sum_probs=67.2
Q ss_pred HHHHHHHHHhcCCcEEEEEEEcCccccchHHHHHHHHhhcceEEEEEeecCCCCCCChhhHHHHHHHHhcCCceEEEEEe
Q 002309 152 MTAVAEMVSYYGWNAVSVIFVDNEYGRNGVSALNDKLAERRCRISYKSGIPPESGVNTGYVMDLLVKVALMESRVIVLHV 231 (938)
Q Consensus 152 ~~ai~~~l~~~~w~~vaii~~d~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~lk~~~~~viv~~~ 231 (938)
...+.++++.++.+++.+|++......+..+.+.+.|++.|+.+..-..+.++ .+.+.+...++.+++.++|+||-.+
T Consensus 19 ~~~l~~~~~~~g~~~~liVtd~~~~~~g~~~~v~~~L~~~gi~~~~~~~v~~~--p~~~~v~~~~~~~~~~~~D~IIavG 96 (383)
T 3ox4_A 19 LEKAIKDLNGSGFKNALIVSDAFMNKSGVVKQVADLLKAQGINSAVYDGVMPN--PTVTAVLEGLKILKDNNSDFVISLG 96 (383)
T ss_dssp HHHHHHTTTTSCCCEEEEEEEHHHHHTTHHHHHHHHHHTTTCEEEEEEEECSS--CBHHHHHHHHHHHHHHTCSEEEEEE
T ss_pred HHHHHHHHHHcCCCEEEEEECCchhhCchHHHHHHHHHHcCCeEEEECCccCC--CCHHHHHHHHHHHHhcCcCEEEEeC
Confidence 34566778889999999999765444446788999999999886543344444 4578888888999989999999876
Q ss_pred Chh--hHHHHHHHHH
Q 002309 232 SPS--LGFQVFSVAK 244 (938)
Q Consensus 232 ~~~--~~~~~l~~a~ 244 (938)
.+. ++..++....
T Consensus 97 GGsv~D~aK~ia~~~ 111 (383)
T 3ox4_A 97 GGSPHDCAKAIALVA 111 (383)
T ss_dssp SHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHH
Confidence 654 5666665544
No 219
>3onm_A Transcriptional regulator LRHA; LYSR, ROVM, transcription factor, virulence factor; 2.40A {Yersinia pseudotuberculosis}
Probab=78.08 E-value=30 Score=33.61 Aligned_cols=81 Identities=11% Similarity=0.086 Sum_probs=56.1
Q ss_pred ceeEEEecccccccceeeeccCCcceEeeeHHHHHHHHHhCCCCccEEEEecCCCCCCCChhHHHHhhhcceecEEeccE
Q 002309 465 KLLKIGVPNRASYREFVSKVRGSDMFQGFCIDVFTAAVNLLPYAVPYQFVAFGDGHKNPSYTQLVDSITTGVFDAVVGDI 544 (938)
Q Consensus 465 ~~lrv~~~~~~~~~~~~~~~~~~~~~~G~~~dll~~la~~l~f~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~D~~~~~~ 544 (938)
.+||||+... + ...+-.+++..+.++.+ .+++.+.. ++...++.+|.+|++|+++...
T Consensus 27 g~l~Ig~~~~--~------------~~~~l~~~l~~f~~~~P-~i~l~i~~-------~~~~~~~~~L~~g~~Dl~i~~~ 84 (238)
T 3onm_A 27 GSLIIGASDD--T------------ADTLLPFLLNRVATLYP-RLAIDVRV-------KRSPFIADMLSSGEVDLAITTA 84 (238)
T ss_dssp CCEEEEECHH--H------------HTTHHHHHHHHHHHHCT-TCCEEEEE-------CCHHHHHHHHHHTSCSEEEECS
T ss_pred eeEEEeccch--h------------hHHHHHHHHHHHHHHCC-CcEEEEEE-------CCHHHHHHHHHCCCccEEEEec
Confidence 5799988841 1 12456678888888875 25566665 5688999999999999998643
Q ss_pred eeecCceeeeeeccceecccEEEEEeccC
Q 002309 545 TIVTNRTKIVDFSQPYAASGLVVVVPFRK 573 (938)
Q Consensus 545 ~~t~~r~~~v~fs~p~~~~~~~~lv~~~~ 573 (938)
.. ..+ -+.++....+++++++..
T Consensus 85 ~~-----~~~-~~~~l~~~~~~~v~~~~~ 107 (238)
T 3onm_A 85 KV-----DSH-PHVILRTSPTLWYCSVDY 107 (238)
T ss_dssp CC------CC-CEEEEEEECEEEEEETTC
T ss_pred CC-----CCc-ceEEeecCCEEEEEcCCC
Confidence 21 112 346777888888887655
No 220
>1twy_A ABC transporter, periplasmic substrate-binding PR; nysgxrc target, structural genomics, protei structure initiative, PSI; 1.65A {Vibrio cholerae o1 biovar eltor} SCOP: c.94.1.1
Probab=77.80 E-value=47 Score=33.20 Aligned_cols=72 Identities=14% Similarity=0.090 Sum_probs=46.0
Q ss_pred eeHHHHHHHHHhCCCCccEEEEecCCCCCCCChhHHHHhhhcceecEEeccEeeecCce-eeeeeccceecccEEEEEec
Q 002309 493 FCIDVFTAAVNLLPYAVPYQFVAFGDGHKNPSYTQLVDSITTGVFDAVVGDITIVTNRT-KIVDFSQPYAASGLVVVVPF 571 (938)
Q Consensus 493 ~~~dll~~la~~l~f~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~D~~~~~~~~t~~r~-~~v~fs~p~~~~~~~~lv~~ 571 (938)
+-.+++..+.++.+ .+++++.. ++...++.+|.+|++|+++........+. ..+. ..|+....+++++++
T Consensus 41 ~l~~~l~~f~~~~P-~i~v~i~~-------~~~~~~~~~l~~g~~Di~i~~~~~~~~~~~~~~~-~~~l~~~~~~~v~~~ 111 (290)
T 1twy_A 41 IMDVLAEKYNQQHP-ETYVAVQG-------VGSTAGISLLKKGVADIAMTSRYLTESEAQNTLH-TFTLAFDGLAIVVNQ 111 (290)
T ss_dssp HHHHHHHHHHHHCT-TCEEEEEE-------SCHHHHHHHHHTTSCSEEEESSCCCTTTCCTTCE-EEEEEEEEEEEEECT
T ss_pred HHHHHHHHHHhhCC-CceEEEEe-------cCcHHHHHHHhcCCCcEEEecCCCchhhhhcCce-EEEEEeeeEEEEECC
Confidence 34567888888773 24455554 55788999999999999886433222110 1222 256777788888875
Q ss_pred cC
Q 002309 572 RK 573 (938)
Q Consensus 572 ~~ 573 (938)
..
T Consensus 112 ~~ 113 (290)
T 1twy_A 112 AN 113 (290)
T ss_dssp TC
T ss_pred CC
Confidence 54
No 221
>2l82_A Designed protein OR32; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, de novo protein; NMR {Artificial gene}
Probab=76.04 E-value=23 Score=29.01 Aligned_cols=97 Identities=10% Similarity=0.085 Sum_probs=65.1
Q ss_pred eEEecCCchHHHHHHHHHHHhcCCcEEEEEEEcCccccchHHHHHHHHhhcceEEEEEeecCCCCCCChhhHHHHHHHHh
Q 002309 141 FVRTTQSDSYQMTAVAEMVSYYGWNAVSVIFVDNEYGRNGVSALNDKLAERRCRISYKSGIPPESGVNTGYVMDLLVKVA 220 (938)
Q Consensus 141 ~~r~~ps~~~~~~ai~~~l~~~~w~~vaii~~d~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~lk 220 (938)
+|-...+|....+-++.-+++.|- +|.++|+|.+-- ....-.+.+.++|..+-.. .+..|++.-+.+|-
T Consensus 4 ifvvfssdpeilkeivreikrqgv-rvvllysdqdek--rrrerleefekqgvdvrtv--------edkedfrenireiw 72 (162)
T 2l82_A 4 IFVVFSSDPEILKEIVREIKRQGV-RVVLLYSDQDEK--RRRERLEEFEKQGVDVRTV--------EDKEDFRENIREIW 72 (162)
T ss_dssp EEEEEESCHHHHHHHHHHHHHTTC-EEEEEECCSCHH--HHHHHHHHHHTTTCEEEEC--------CSHHHHHHHHHHHH
T ss_pred EEEEecCCHHHHHHHHHHHHhCCe-EEEEEecCchHH--HHHHHHHHHHHcCCceeee--------ccHHHHHHHHHHHH
Confidence 445556777777778777887664 788899876522 2233345677889876532 23678888888775
Q ss_pred c--CCceEEEEEeC--hhhHHHHHHHHHHcCC
Q 002309 221 L--MESRVIVLHVS--PSLGFQVFSVAKYLGM 248 (938)
Q Consensus 221 ~--~~~~viv~~~~--~~~~~~~l~~a~~~g~ 248 (938)
+ .+-+++++... -.-...|+..|++.|.
T Consensus 73 erypqldvvvivttddkewikdfieeakergv 104 (162)
T 2l82_A 73 ERYPQLDVVVIVTTDDKEWIKDFIEEAKERGV 104 (162)
T ss_dssp HHCTTCCEEEEEECCCHHHHHHHHHHHHHTTC
T ss_pred HhCCCCcEEEEEecCcHHHHHHHHHHHHhcCc
Confidence 4 45667666543 3457779999999885
No 222
>3um7_A Potassium channel subfamily K member 4; potassium ION channel, metal transport; 3.31A {Homo sapiens}
Probab=75.44 E-value=2.6 Score=43.54 Aligned_cols=56 Identities=16% Similarity=0.160 Sum_probs=50.8
Q ss_pred ccchhhhhHHHHHHHhhhhhhhhhhcccCccccchhHHHHHHHHHHHHHHhhhhhhhhhhhh
Q 002309 621 RQVITILWFSLSTLFFAHIAIFVILAEENTVSTLGRLVLIIWLFVVLIINSSYTASLTSILT 682 (938)
Q Consensus 621 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~p~s~s~R~~~~~w~~~~lil~s~Yta~L~s~Lt 682 (938)
.++.+++||++.++..-| +++..|.+..+|++.++|.++++.+.....+++...+.
T Consensus 114 w~~~~a~yf~~~t~tTvG------YGdi~P~T~~gk~~~i~~~l~Gi~~~~~~~~~i~~~l~ 169 (309)
T 3um7_A 114 WDLGSAFFFSGTIITTIG------YGNVALRTDAGRLFCIFYALVGIPLFGILLAGVGDRLG 169 (309)
T ss_dssp CSHHHHHHHHHHHHTSCC------CCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CChhhhhHhhheeeeecc------cCCCCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 468899999999998877 67889999999999999999999999999999988874
No 223
>3r26_A Molybdate-binding periplasmic protein; protein binding; 1.70A {Escherichia coli} SCOP: c.94.1.1 PDB: 3axf_A 1amf_A 1wod_A
Probab=74.64 E-value=27 Score=34.41 Aligned_cols=70 Identities=24% Similarity=0.212 Sum_probs=42.7
Q ss_pred HHHHHHHHHhCCCCccEEEEecCCCCCCCChhHHHHhhhcce-ecEEeccEeeecCc---eeeee--eccceecccEEEE
Q 002309 495 IDVFTAAVNLLPYAVPYQFVAFGDGHKNPSYTQLVDSITTGV-FDAVVGDITIVTNR---TKIVD--FSQPYAASGLVVV 568 (938)
Q Consensus 495 ~dll~~la~~l~f~~~~~~~~~~~~~~~~~~~~~i~~l~~g~-~D~~~~~~~~t~~r---~~~v~--fs~p~~~~~~~~l 568 (938)
-++++.+.++-|.++++.+ ++-..++..+.+|. +|+.++.-.-..++ ...+. ...+|....++++
T Consensus 22 ~~l~~~Fe~~~gi~V~~~~---------~~s~~l~~~i~~g~~~Dv~~~a~~~~~~~l~~~g~~~~~~~~~~~~~~lvl~ 92 (237)
T 3r26_A 22 QDIATQFKKEKGVDVVSSF---------ASSSTLARQIEAGAPADLFISADQKWMDYAVDKKAIDTATRQTLLGNSLVVV 92 (237)
T ss_dssp HHHHHHHHHHHCCEEEEEE---------ECHHHHHHHHHHTCCCSEEECSSHHHHHHHHHTTCBCGGGCEEEEEECEEEE
T ss_pred HHHHHHHHhccCCeEEEEE---------CCHHHHHHHHHcCCCceEEEECCHHHHHHHHHCCCCCCCceeeeEcceEEEE
Confidence 4677777777786655433 33567888888887 99887632111111 11221 2347788888999
Q ss_pred EeccC
Q 002309 569 VPFRK 573 (938)
Q Consensus 569 v~~~~ 573 (938)
+++..
T Consensus 93 ~~~~~ 97 (237)
T 3r26_A 93 APKAS 97 (237)
T ss_dssp EESSC
T ss_pred EeCCC
Confidence 88754
No 224
>2hqb_A Transcriptional activator of COMK gene; berkeley structure genomics center target 1957B, structural genomics, PSI; 2.70A {Bacillus halodurans}
Probab=74.12 E-value=34 Score=35.03 Aligned_cols=121 Identities=8% Similarity=-0.065 Sum_probs=74.0
Q ss_pred EEEEEeeCCCcchhHHHHHHHHHHHHHhcCCCCCCCCEEEEEEccCCCChHHHHHHHHHHHhcCcEEEEcCCChhHHHHH
Q 002309 33 NVGALFTLDSTIGRVAKIAIEEAVKDVNSNSSILHGTKLNITMQSSNCSGFIGMVEALRFMETDIVAIIGPQCSTVAHIV 112 (938)
Q Consensus 33 ~IG~i~~~~~~~g~~~~~a~~~Av~~iN~~~~il~g~~l~~~~~D~~~~~~~a~~~a~~li~~~V~aviGp~~s~~~~~v 112 (938)
+||.+....... ...|+..++++.| +. +..+.+..+-.++..+.+++.+|+++++.+|+...... +..+
T Consensus 128 ~Ig~i~g~~~~~---r~~Gf~~~~~~~~------~~-~~~~~~~~~~~~~~~g~~~a~~ll~~~~daI~~~~D~~-a~Gv 196 (296)
T 2hqb_A 128 KVGVIAAFPWQP---EVEGFVDGAKYMN------ES-EAFVRYVGEWTDADKALELFQELQKEQVDVFYPAGDGY-HVPV 196 (296)
T ss_dssp EEEEEESCTTCH---HHHHHHHHHHHTT------CC-EEEEEECSSSSCHHHHHHHHHHHHTTTCCEEECCCTTT-HHHH
T ss_pred eEEEEcCcCchh---hHHHHHHHHHHhC------CC-eEEEEeeccccCHHHHHHHHHHHHHCCCcEEEECCCCC-CHHH
Confidence 678887654322 6789999998876 23 44444443334777888889999988999999755543 3444
Q ss_pred HHhhccCCccEEEcccCCCCCCCCCCCceEEecCCchHHHHHHHHHHHhcCCcE
Q 002309 113 SYVSNELQVPLLSFGVTDPTLSSLQYPFFVRTTQSDSYQMTAVAEMVSYYGWNA 166 (938)
Q Consensus 113 a~~~~~~~iP~Is~~~~~~~l~~~~~p~~~r~~ps~~~~~~ai~~~l~~~~w~~ 166 (938)
...+...++.+|.+.. +.. .....|.+-.+..+-...+...++.+..=.|+.
T Consensus 197 ~~a~~e~Gv~viG~D~-~~~-~~~~~~~LTsv~~~~~~~~~~a~~~~~~g~~~~ 248 (296)
T 2hqb_A 197 VEAIKDQGDFAIGYVG-DQA-DLGGSTILTSTVQHVDDLYVLVAKRFQEGKLES 248 (296)
T ss_dssp HHHHHHHTCEEEEEES-CCS-SSSCSSEEEEEEECHHHHHHHHHHHTTTTCCCC
T ss_pred HHHHHHcCCEEEEEec-chh-hhCCCeEEEEEEEEhHHHHHHHHHHHHcCCCCC
Confidence 4455666788888755 221 111124444444454555555555554445653
No 225
>3sya_A G protein-activated inward rectifier potassium CH; ION channel, potassium channel, inward rectification, sodium PIP2 binding, G protein binding; HET: PIO; 2.98A {Mus musculus} PDB: 3syo_A 3syc_A 3syp_A 3syq_A*
Probab=72.28 E-value=5.1 Score=41.86 Aligned_cols=61 Identities=13% Similarity=0.118 Sum_probs=52.9
Q ss_pred ccchhhhhHHHHHHHhhhhhhhhhhcccCcc--ccchhHHHHHHHHHHHHHHhhhhhhhhhhhhccccc
Q 002309 621 RQVITILWFSLSTLFFAHIAIFVILAEENTV--STLGRLVLIIWLFVVLIINSSYTASLTSILTVQQLY 687 (938)
Q Consensus 621 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~p~--s~s~R~~~~~w~~~~lil~s~Yta~L~s~Lt~~~~~ 687 (938)
.++...+||++.++..-| ++...|. +..+|++..+=.++++++.+.-++-+.+-++.++-.
T Consensus 90 ~sf~~af~fSv~T~TTvG------YGd~~p~~~~~~g~~l~~~~~l~G~~l~a~~~giv~ak~srp~~r 152 (340)
T 3sya_A 90 NGFVSAFLFSIETETTIG------YGYRVITDKCPEGIILLLIQSVLGSIVNAFMVGCMFVKISQPKKR 152 (340)
T ss_dssp CSTTHHHHHHHHHHSCCC------CSSSCBCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCGGGG
T ss_pred cCHHHHHhhhheeeeeec------CCCccCcCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhc
Confidence 468899999999998887 5666775 577999999999999999999999999999887644
No 226
>3szp_A Transcriptional regulator, LYSR family; winged helix-turn helix, DNA-binding, transcription factor; 2.20A {Vibrio cholerae} PDB: 3t1b_B
Probab=71.56 E-value=5.8 Score=40.33 Aligned_cols=72 Identities=8% Similarity=-0.078 Sum_probs=44.7
Q ss_pred ccccCCHHHHHHHHhcCCCCCceEEEEecchhHHHHHhcCCcEEEeCc--cccccceEeeecCCCcchhhHHHHHHhhhc
Q 002309 726 LVALRTPEDYAKALKDGPGKGGVAAVVDERPYVELFLSSQCSFRIVGQ--EFTKSGWGFAFPRDSPLAVDLSSAILELAE 803 (938)
Q Consensus 726 ~~~~~~~~~~~~~l~~~~~~g~~~a~i~~~~~~~~~~~~~~~l~~~~~--~~~~~~~~~~~~k~spl~~~i~~~il~l~e 803 (938)
....++.....+.+.. |...+++-+.....+... ..+..+.. ......++++.+++.+..+.+...+..+++
T Consensus 214 ~~~~~~~~~~~~~v~~----g~Giailp~~~~~~~~~~--~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~f~~~l~~ 287 (291)
T 3szp_A 214 RFQASALNVVRSACSE----GLGITLMPDVMLREFLED--GSLVQVLSDWSSNPRDIYMLYNHKDHQPEKVRLFIDFVIG 287 (291)
T ss_dssp SEEESSHHHHHHHHHT----TCCEEEEEGGGTHHHHHT--TTSEECCTTCBCCCEEEEEEECCGGGCCHHHHHHHHHHHH
T ss_pred ceEECcHHHHHHHHHc----CCcEEEccHHHHHHHHhC--CCeEEecCCccCCCCcEEEEECCCCCCCHHHHHHHHHHHH
Confidence 3456788889999998 666677766554444322 23333322 233566888999987766666666655443
No 227
>3gzg_A Molybdate-binding periplasmic protein; permease; molybdate complex, mutant K127S, metal binding protein; 1.55A {Xanthomonas axonopodis PV} PDB: 2h5y_A
Probab=71.51 E-value=34 Score=34.07 Aligned_cols=70 Identities=17% Similarity=0.116 Sum_probs=42.0
Q ss_pred HHHHHHHHHhCCCCccEEEEecCCCCCCCChhHHHHhhhcce-ecEEeccEeeecCc---eeeee--eccceecccEEEE
Q 002309 495 IDVFTAAVNLLPYAVPYQFVAFGDGHKNPSYTQLVDSITTGV-FDAVVGDITIVTNR---TKIVD--FSQPYAASGLVVV 568 (938)
Q Consensus 495 ~dll~~la~~l~f~~~~~~~~~~~~~~~~~~~~~i~~l~~g~-~D~~~~~~~~t~~r---~~~v~--fs~p~~~~~~~~l 568 (938)
-+|++.+.++.|.++++.+ +.-..++..+.+|. +|+.++.-.-..++ ...++ -..+|....++++
T Consensus 38 ~~l~~~Fe~~~gi~V~~~~---------~~Sg~l~~qi~~g~~~DV~~sa~~~~~~~l~~~gl~~~~~~~~~a~~~lvl~ 108 (253)
T 3gzg_A 38 DEAATAYEKATGTPVRVSY---------AASSALARQIEQGAPADVFLSADLEWMDYLQQHGLVLPAQRHNLLGNTLVLV 108 (253)
T ss_dssp HHHHHHHHHHHSCCEEEEE---------ECHHHHHHHHHTTCCCSEEECSSHHHHHHHHHTTSSCGGGEEEEEEECEEEE
T ss_pred HHHHHHHHHHhCCeEEEEE---------CChHHHHHHHHcCCCceEEEECCHHHHHHHHHCCCcCCCcceeEEeeEEEEE
Confidence 4677777777786655443 34567888888886 89887632111111 11121 1246677788888
Q ss_pred EeccC
Q 002309 569 VPFRK 573 (938)
Q Consensus 569 v~~~~ 573 (938)
+++..
T Consensus 109 ~~~~~ 113 (253)
T 3gzg_A 109 APASS 113 (253)
T ss_dssp EETTC
T ss_pred EECCC
Confidence 88765
No 228
>3um7_A Potassium channel subfamily K member 4; potassium ION channel, metal transport; 3.31A {Homo sapiens}
Probab=70.98 E-value=5 Score=41.35 Aligned_cols=56 Identities=14% Similarity=0.247 Sum_probs=46.9
Q ss_pred cchhhhhHHHHHHHhhhhhhhhhhcccCccccchh------HHHHHHHHHHHHHHhhhhhhhhhhhhc
Q 002309 622 QVITILWFSLSTLFFAHIAIFVILAEENTVSTLGR------LVLIIWLFVVLIINSSYTASLTSILTV 683 (938)
Q Consensus 622 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~p~s~s~R------~~~~~w~~~~lil~s~Yta~L~s~Lt~ 683 (938)
++.+++||++-++..-| +++..|.+..+| ++.++|.++++.+.++-.+.+..++..
T Consensus 224 ~~~da~y~~~vTltTvG------yGd~~p~t~~g~~~~~y~~~~~~~il~Gl~~~a~~~~~i~~~~~~ 285 (309)
T 3um7_A 224 SKLEAIYFVIVTLTTVG------FGDYVAGADPRQDSPAYQPLVWFWILLGLAYFASVLTTIGNWLRV 285 (309)
T ss_dssp CHHHHHHHHHHHHTTCC------CSSCCTTCCTTCCCSTHHHHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred CHHHHHHHHHhheeccc------cCCCCCCCccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57899999999998877 567788887776 599999999999999888887777654
No 229
>1rrm_A Lactaldehyde reductase; structural genomics, dehydrogenase, PSI, protein structure initiative; HET: APR; 1.60A {Escherichia coli} SCOP: e.22.1.2 PDB: 2bi4_A* 2bl4_A*
Probab=70.65 E-value=6.4 Score=42.49 Aligned_cols=101 Identities=10% Similarity=0.029 Sum_probs=69.4
Q ss_pred CceEEecCCchHHHHHHHHHHHhcCCcEEEEEEEcCccccchHHHHHHHHhhcceEEEEEeecCCCCCCChhhHHHHHHH
Q 002309 139 PFFVRTTQSDSYQMTAVAEMVSYYGWNAVSVIFVDNEYGRNGVSALNDKLAERRCRISYKSGIPPESGVNTGYVMDLLVK 218 (938)
Q Consensus 139 p~~~r~~ps~~~~~~ai~~~l~~~~w~~vaii~~d~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~ 218 (938)
|+-+...+... ..+.++++.++.+++.+|++......+..+.+.+.|++.|+++..-..+.++ .+.+.+...++.
T Consensus 9 p~~i~~G~g~~---~~l~~~l~~~g~~~~livtd~~~~~~g~~~~v~~~L~~~g~~~~~~~~~~~~--p~~~~v~~~~~~ 83 (386)
T 1rrm_A 9 NETAWFGRGAV---GALTDEVKRRGYQKALIVTDKTLVQCGVVAKVTDKMDAAGLAWAIYDGVVPN--PTITVVKEGLGV 83 (386)
T ss_dssp CSEEEESTTGG---GGHHHHHHHHTCCEEEEECBHHHHHTTHHHHHHHHHHHTTCEEEEECBCCSS--CBHHHHHHHHHH
T ss_pred CceEEECcCHH---HHHHHHHHHcCCCEEEEEECcchhhchHHHHHHHHHHHcCCeEEEECCccCC--CCHHHHHHHHHH
Confidence 44444544433 3355667777889999998655444446888999999999876533344444 457788888889
Q ss_pred HhcCCceEEEEEeCh--hhHHHHHHHHH
Q 002309 219 VALMESRVIVLHVSP--SLGFQVFSVAK 244 (938)
Q Consensus 219 lk~~~~~viv~~~~~--~~~~~~l~~a~ 244 (938)
+++.++|+||-.+.+ -++..++....
T Consensus 84 ~~~~~~d~IIavGGGsv~D~aK~iA~~~ 111 (386)
T 1rrm_A 84 FQNSGADYLIAIGGGSPQDTCKAIGIIS 111 (386)
T ss_dssp HHHHTCSEEEEEESHHHHHHHHHHHHHH
T ss_pred HHhcCcCEEEEeCChHHHHHHHHHHHHH
Confidence 998999999977654 46666666544
No 230
>1jfl_A Aspartate racemase; alpha-beta structure, HOMO-dimer, homologous domains, isomer; 1.90A {Pyrococcus horikoshii} SCOP: c.78.2.1 c.78.2.1 PDB: 2dx7_A* 1iu9_A
Probab=70.29 E-value=18 Score=35.47 Aligned_cols=80 Identities=16% Similarity=0.250 Sum_probs=47.8
Q ss_pred HHHHHHHhcCcEEEEcCCChhHHHHHHHhhccCCccEEEcccCCCCCCCCCCCceEEecCCchHHHHHHHHHHHhcCCcE
Q 002309 87 VEALRFMETDIVAIIGPQCSTVAHIVSYVSNELQVPLLSFGVTDPTLSSLQYPFFVRTTQSDSYQMTAVAEMVSYYGWNA 166 (938)
Q Consensus 87 ~~a~~li~~~V~aviGp~~s~~~~~va~~~~~~~iP~Is~~~~~~~l~~~~~p~~~r~~ps~~~~~~ai~~~l~~~~w~~ 166 (938)
+.+..|.+.|+.+|+-+.++.. ..+..+-+..++|++.. .++.++.+...+-++
T Consensus 65 ~~~~~l~~~g~d~iviaCnTa~-~~~~~l~~~~~iPvi~i-------------------------~~~~~~~a~~~~~~r 118 (228)
T 1jfl_A 65 WTAKRLEECGADFIIMPCNTAH-AFVEDIRKAIKIPIISM-------------------------IEETAKKVKELGFKK 118 (228)
T ss_dssp HHHHHHHHHTCSEEECSCTGGG-GGHHHHHHHCSSCBCCH-------------------------HHHHHHHHHHTTCSE
T ss_pred HHHHHHHHcCCCEEEEcCccHH-HHHHHHHHhCCCCEech-------------------------HHHHHHHHHHcCCCe
Confidence 3444555559999988777765 55556666778988852 123333333336778
Q ss_pred EEEEEEcCccccchHHHHHHHHhhcceEE
Q 002309 167 VSVIFVDNEYGRNGVSALNDKLAERRCRI 195 (938)
Q Consensus 167 vaii~~d~~~g~~~~~~l~~~l~~~g~~v 195 (938)
|+++......- ...+++.+++.|+++
T Consensus 119 igvlaT~~T~~---~~~y~~~l~~~g~~v 144 (228)
T 1jfl_A 119 AGLLATTGTIV---SGVYEKEFSKYGVEI 144 (228)
T ss_dssp EEEECCHHHHH---HTHHHHHHHHTTCEE
T ss_pred EEEEecHHHhh---hhHHHHHHHHCCCeE
Confidence 88886443211 124456666777765
No 231
>1vlj_A NADH-dependent butanol dehydrogenase; TM0820, structural G JCSG, protein structure initiative, PSI, joint center for S genomics; HET: NAP; 1.78A {Thermotoga maritima} SCOP: e.22.1.2
Probab=69.77 E-value=12 Score=40.71 Aligned_cols=88 Identities=10% Similarity=0.060 Sum_probs=62.4
Q ss_pred HHHHHHHhcCCcEEEEEEEcCcccc-chHHHHHHHHhhcceEEEEEeecCCCCCCChhhHHHHHHHHhcCCceEEEEEeC
Q 002309 154 AVAEMVSYYGWNAVSVIFVDNEYGR-NGVSALNDKLAERRCRISYKSGIPPESGVNTGYVMDLLVKVALMESRVIVLHVS 232 (938)
Q Consensus 154 ai~~~l~~~~w~~vaii~~d~~~g~-~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~lk~~~~~viv~~~~ 232 (938)
.+.++++.++.+++.+|+++..... ...+.+.+.|++.|+++..-..+.++ .+.+.+...++.+++.++|+||-.+.
T Consensus 33 ~l~~~l~~~g~~r~liVtd~~~~~~~g~~~~v~~~L~~~g~~~~~f~~v~~~--p~~~~v~~~~~~~~~~~~D~IIavGG 110 (407)
T 1vlj_A 33 KIGEEIKNAGIRKVLFLYGGGSIKKNGVYDQVVDSLKKHGIEWVEVSGVKPN--PVLSKVHEAVEVAKKEKVEAVLGVGG 110 (407)
T ss_dssp GHHHHHHHTTCCEEEEEECSSHHHHSSHHHHHHHHHHHTTCEEEEECCCCSS--CBHHHHHHHHHHHHHTTCSEEEEEES
T ss_pred HHHHHHHHcCCCeEEEEECchHHhhccHHHHHHHHHHHcCCeEEEecCccCC--CCHHHHHHHHHHHHhcCCCEEEEeCC
Confidence 3556677788899999986444333 36788899999889876532233333 34678888888999999999997765
Q ss_pred h--hhHHHHHHHH
Q 002309 233 P--SLGFQVFSVA 243 (938)
Q Consensus 233 ~--~~~~~~l~~a 243 (938)
+ -++..++...
T Consensus 111 GsviD~AK~iA~~ 123 (407)
T 1vlj_A 111 GSVVDSAKAVAAG 123 (407)
T ss_dssp HHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHH
Confidence 4 4666666554
No 232
>2zsk_A PH1733, 226AA long hypothetical aspartate racemase; alpha/beta fold, unknown function; 2.55A {Pyrococcus horikoshii}
Probab=69.10 E-value=17 Score=35.68 Aligned_cols=76 Identities=18% Similarity=0.162 Sum_probs=46.4
Q ss_pred HHhcCcEEEEcCCChhHHHHHHHhhccCCccEEEcccCCCCCCCCCCCceEEecCCchHHHHHHHHHHHhcCCcEEEEEE
Q 002309 92 FMETDIVAIIGPQCSTVAHIVSYVSNELQVPLLSFGVTDPTLSSLQYPFFVRTTQSDSYQMTAVAEMVSYYGWNAVSVIF 171 (938)
Q Consensus 92 li~~~V~aviGp~~s~~~~~va~~~~~~~iP~Is~~~~~~~l~~~~~p~~~r~~ps~~~~~~ai~~~l~~~~w~~vaii~ 171 (938)
|.+.|+.+|+-+.++.... +..+-+..++|++.. .++.++.+...+-++|+++.
T Consensus 69 L~~~g~d~iviaCnTa~~~-~~~l~~~~~iPvi~i-------------------------~~a~~~~~~~~~~~rigvla 122 (226)
T 2zsk_A 69 LERAGAELIAFAANTPHLV-FDDVQREVNVPMVSI-------------------------IDAVAEEILKRGVRKVLLLG 122 (226)
T ss_dssp HHHHTCSEEEESSSGGGGG-HHHHHHHCSSCBCCH-------------------------HHHHHHHHHHTTCCEEEEES
T ss_pred HHHcCCCEEEECCCcHHHH-HHHHHHhCCCCEecc-------------------------HHHHHHHHHHcCCCeEEEEe
Confidence 3344899888777766532 345555668888852 24444444445678999997
Q ss_pred EcCccccchHHHHHHHHhhcceEEE
Q 002309 172 VDNEYGRNGVSALNDKLAERRCRIS 196 (938)
Q Consensus 172 ~d~~~g~~~~~~l~~~l~~~g~~v~ 196 (938)
...... ...+++.+++.|+++.
T Consensus 123 T~~T~~---~~~y~~~l~~~g~~v~ 144 (226)
T 2zsk_A 123 TKTTMT---ADFYIKTLEEKGLEVV 144 (226)
T ss_dssp STTTTS---CHHHHHHHHTTTCEEE
T ss_pred CHHHHh---hhHHHHHHHHCCCEEE
Confidence 433221 1345677777787754
No 233
>1o2d_A Alcohol dehydrogenase, iron-containing; TM0920, structural genomics, JCSG, PSI, protein structure initiative; HET: MSE NAP TRS; 1.30A {Thermotoga maritima} SCOP: e.22.1.2 PDB: 1vhd_A*
Probab=67.76 E-value=15 Score=39.16 Aligned_cols=99 Identities=11% Similarity=0.015 Sum_probs=67.7
Q ss_pred CceEEecCCchHHHHHHHHHHHhcCCcEEEEEEEcCcccc-chHHHHHHHHhhcceEEEEEeecCCCCCCChhhHHHHHH
Q 002309 139 PFFVRTTQSDSYQMTAVAEMVSYYGWNAVSVIFVDNEYGR-NGVSALNDKLAERRCRISYKSGIPPESGVNTGYVMDLLV 217 (938)
Q Consensus 139 p~~~r~~ps~~~~~~ai~~~l~~~~w~~vaii~~d~~~g~-~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~d~~~~l~ 217 (938)
|+-+...+.. ...+.++++.++ +++.+|++...+.. +..+.+.+.|++.|+++..-..+.++ .+.+.+...++
T Consensus 19 p~~i~~G~g~---~~~l~~~l~~~g-~~~liVtd~~~~~~~g~~~~v~~~L~~~g~~~~~~~~~~~~--p~~~~v~~~~~ 92 (371)
T 1o2d_A 19 PTDVFFGEKI---LEKRGNIIDLLG-KRALVVTGKSSSKKNGSLDDLKKLLDETEISYEIFDEVEEN--PSFDNVMKAVE 92 (371)
T ss_dssp CCEEEESTTH---HHHHGGGGGGTC-SEEEEEEESSGGGTSSHHHHHHHHHHHTTCEEEEEEEECSS--CBHHHHHHHHH
T ss_pred CceEEECcCH---HHHHHHHHHHcC-CEEEEEECchHHhhccHHHHHHHHHHHcCCeEEEeCCccCC--CCHHHHHHHHH
Confidence 4444444432 234556677778 89999997655443 35788999999889876433334444 45788889999
Q ss_pred HHhcCCceEEEEEeCh--hhHHHHHHHH
Q 002309 218 KVALMESRVIVLHVSP--SLGFQVFSVA 243 (938)
Q Consensus 218 ~lk~~~~~viv~~~~~--~~~~~~l~~a 243 (938)
.+++.++|+||-.+.+ -++..++...
T Consensus 93 ~~~~~~~d~IIavGGGsv~D~AK~iA~~ 120 (371)
T 1o2d_A 93 RYRNDSFDFVVGLGGGSPMDFAKAVAVL 120 (371)
T ss_dssp HHTTSCCSEEEEEESHHHHHHHHHHHHH
T ss_pred HHHhcCCCEEEEeCChHHHHHHHHHHHH
Confidence 9999999999977654 4666666554
No 234
>3uhj_A Probable glycerol dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.34A {Sinorhizobium meliloti}
Probab=65.16 E-value=8.5 Score=41.39 Aligned_cols=82 Identities=10% Similarity=0.033 Sum_probs=54.1
Q ss_pred HHHHHHHhcCCcEEEEEEEcCccccchHHHHHHHHhhcceEEEEEeecCCCCCCChhhHHHHHHHHhcCCceEEEEEeCh
Q 002309 154 AVAEMVSYYGWNAVSVIFVDNEYGRNGVSALNDKLAERRCRISYKSGIPPESGVNTGYVMDLLVKVALMESRVIVLHVSP 233 (938)
Q Consensus 154 ai~~~l~~~~w~~vaii~~d~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~lk~~~~~viv~~~~~ 233 (938)
.+.++++.++ +++.+|++...+.. ..+.+.+.|++ |+.+.+ ..+.++ .+.+++...++.+++.++|+||-.+.+
T Consensus 43 ~l~~~l~~~g-~r~liVtd~~~~~~-~~~~v~~~L~~-g~~~~~-~~~~~~--p~~~~v~~~~~~~~~~~~d~IIavGGG 116 (387)
T 3uhj_A 43 KLAAYLAPLG-KRALVLIDRVLFDA-LSERIGKSCGD-SLDIRF-ERFGGE--CCTSEIERVRKVAIEHGSDILVGVGGG 116 (387)
T ss_dssp TTHHHHGGGC-SEEEEEECTTTHHH-HHHHC-------CCEEEE-EECCSS--CSHHHHHHHHHHHHHHTCSEEEEESSH
T ss_pred HHHHHHHHcC-CEEEEEECchHHHH-HHHHHHHHHHc-CCCeEE-EEcCCC--CCHHHHHHHHHHHhhcCCCEEEEeCCc
Confidence 3566778888 99999986665543 66788888988 988743 344544 457788888888888899999887665
Q ss_pred h--hHHHHHH
Q 002309 234 S--LGFQVFS 241 (938)
Q Consensus 234 ~--~~~~~l~ 241 (938)
. ++..++.
T Consensus 117 s~~D~AK~iA 126 (387)
T 3uhj_A 117 KTADTAKIVA 126 (387)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 4 4555554
No 235
>3ukm_A Potassium channel subfamily K member 1; membrane protein, eukaryotic, two-pore DO potassium channel, K2P channel, membrane; HET: UND; 3.40A {Homo sapiens}
Probab=64.91 E-value=6.2 Score=39.97 Aligned_cols=58 Identities=16% Similarity=0.233 Sum_probs=50.9
Q ss_pred ccchhhhhHHHHHHHhhhhhhhhhhcccCccccchhHHHHHHHHHHHHHHhhhhhhhhhhhhcc
Q 002309 621 RQVITILWFSLSTLFFAHIAIFVILAEENTVSTLGRLVLIIWLFVVLIINSSYTASLTSILTVQ 684 (938)
Q Consensus 621 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~p~s~s~R~~~~~w~~~~lil~s~Yta~L~s~Lt~~ 684 (938)
.++.+++||++.++..-| +++..|.+..+|++.+++.++++.++..+.+++...+...
T Consensus 92 w~~~~a~yf~~~t~tTvG------yGd~~P~T~~Gk~f~~~~~l~Gi~~~~~~~~~~~~~l~~~ 149 (280)
T 3ukm_A 92 WDFTSALFFASTVLSTTG------YGHTVPLSDGGKAFCIIYSVIGIPFTLLFLTAVVQRITVH 149 (280)
T ss_dssp SSHHHHHHHHHHHHTTCC------CCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CChhcchhheeeeeeccc------cCCcCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 468899999999998887 6788999999999999999999999999999888766543
No 236
>3m9w_A D-xylose-binding periplasmic protein; xylose binding protein, conformational changes, SUGA protein; 2.15A {Escherichia coli} PDB: 3m9x_A* 3ma0_A*
Probab=63.77 E-value=20 Score=36.92 Aligned_cols=79 Identities=15% Similarity=0.042 Sum_probs=58.5
Q ss_pred cEEEEEEEc--CccccchHHHHHHHHhhcceEEEEEeecCCCCCCChhhHHHHHHHHhcCCceEEEEEeChhh-HHHHHH
Q 002309 165 NAVSVIFVD--NEYGRNGVSALNDKLAERRCRISYKSGIPPESGVNTGYVMDLLVKVALMESRVIVLHVSPSL-GFQVFS 241 (938)
Q Consensus 165 ~~vaii~~d--~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~lk~~~~~viv~~~~~~~-~~~~l~ 241 (938)
++|+++..+ +.|.......+.+++++.|+.+..... . .+.......++.+...++|.||+...... ....++
T Consensus 3 ~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~-~----~~~~~~~~~i~~l~~~~vdgiIi~~~~~~~~~~~~~ 77 (313)
T 3m9w_A 3 VKIGMAIDDLRLERWQKDRDIFVKKAESLGAKVFVQSA-N----GNEETQMSQIENMINRGVDVLVIIPYNGQVLSNVVK 77 (313)
T ss_dssp CEEEEEESCCSSSTTHHHHHHHHHHHHHTSCEEEEEEC-T----TCHHHHHHHHHHHHHTTCSEEEEECSSTTSCHHHHH
T ss_pred cEEEEEeCCCCChHHHHHHHHHHHHHHHcCCEEEEECC-C----CCHHHHHHHHHHHHHcCCCEEEEeCCChhhhHHHHH
Confidence 578888854 678888899999999999998775432 1 23555567788888889999998765443 356788
Q ss_pred HHHHcCC
Q 002309 242 VAKYLGM 248 (938)
Q Consensus 242 ~a~~~g~ 248 (938)
.+.+.|+
T Consensus 78 ~~~~~~i 84 (313)
T 3m9w_A 78 EAKQEGI 84 (313)
T ss_dssp HHHTTTC
T ss_pred HHHHCCC
Confidence 8887665
No 237
>2pju_A Propionate catabolism operon regulatory protein; structural genomics, PRPR, transcriptional regulation, PSI- 2, protein structure initiative; 2.10A {Escherichia coli} SCOP: c.92.3.1
Probab=63.47 E-value=92 Score=30.25 Aligned_cols=133 Identities=13% Similarity=0.110 Sum_probs=81.9
Q ss_pred EEEccCCCChHHHHHHHHHHHhc-CcEEEEcCCChhHHHHHHHhhccCCccEEEcccCCCCCCCCCCCceEEecCCchHH
Q 002309 73 ITMQSSNCSGFIGMVEALRFMET-DIVAIIGPQCSTVAHIVSYVSNELQVPLLSFGVTDPTLSSLQYPFFVRTTQSDSYQ 151 (938)
Q Consensus 73 ~~~~D~~~~~~~a~~~a~~li~~-~V~aviGp~~s~~~~~va~~~~~~~iP~Is~~~~~~~l~~~~~p~~~r~~ps~~~~ 151 (938)
+.+.+ ++-..++..+.+++.+ ++.+||.-. ..+..+. +..++|+|.. ..+..+.
T Consensus 41 I~vi~--~~le~av~~a~~~~~~~~~dVIISRG--gta~~Lr---~~~~iPVV~I------------------~vs~~Di 95 (225)
T 2pju_A 41 ITPIQ--LGFEKAVTYIRKKLANERCDAIIAAG--SNGAYLK---SRLSVPVILI------------------KPSGYDV 95 (225)
T ss_dssp EEEEC--CCHHHHHHHHHHHTTTSCCSEEEEEH--HHHHHHH---TTCSSCEEEE------------------CCCHHHH
T ss_pred EEEec--CcHHHHHHHHHHHHhcCCCeEEEeCC--hHHHHHH---hhCCCCEEEe------------------cCCHHHH
Confidence 44444 3345677788887775 688998522 3333333 3458999963 2344555
Q ss_pred HHHHHHHHHhcCCcEEEEEEEcCccccchHHHHHHHHhhcceEEEEEeecCCCCCCChhhHHHHHHHHhcCCceEEEEEe
Q 002309 152 MTAVAEMVSYYGWNAVSVIFVDNEYGRNGVSALNDKLAERRCRISYKSGIPPESGVNTGYVMDLLVKVALMESRVIVLHV 231 (938)
Q Consensus 152 ~~ai~~~l~~~~w~~vaii~~d~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~lk~~~~~viv~~~ 231 (938)
.+++...-+ ++ +++++|.-.+. ...+..+.+.+ |.++... .+ .+.++....++++++.+.++||-.+
T Consensus 96 l~aL~~a~~-~~-~kIavVg~~~~--~~~~~~i~~ll---~~~i~~~-~~-----~~~ee~~~~i~~l~~~G~~vVVG~~ 162 (225)
T 2pju_A 96 LQFLAKAGK-LT-SSIGVVTYQET--IPALVAFQKTF---NLRLDQR-SY-----ITEEDARGQINELKANGTEAVVGAG 162 (225)
T ss_dssp HHHHHHTTC-TT-SCEEEEEESSC--CHHHHHHHHHH---TCCEEEE-EE-----SSHHHHHHHHHHHHHTTCCEEEESH
T ss_pred HHHHHHHHh-hC-CcEEEEeCchh--hhHHHHHHHHh---CCceEEE-Ee-----CCHHHHHHHHHHHHHCCCCEEECCH
Confidence 666665533 44 58888874443 12345555555 3444432 22 2377999999999999999977543
Q ss_pred ChhhHHHHHHHHHHcCCC
Q 002309 232 SPSLGFQVFSVAKYLGMM 249 (938)
Q Consensus 232 ~~~~~~~~l~~a~~~g~~ 249 (938)
...+.|++.|+.
T Consensus 163 ------~~~~~A~~~Gl~ 174 (225)
T 2pju_A 163 ------LITDLAEEAGMT 174 (225)
T ss_dssp ------HHHHHHHHTTSE
T ss_pred ------HHHHHHHHcCCc
Confidence 235677888874
No 238
>1xs5_A 29 kDa protein, membrane lipoprotein TPN32; periplasmic binding protein, methionine, membrane protein; 1.85A {Treponema pallidum} SCOP: c.94.1.1
Probab=62.51 E-value=1e+02 Score=30.29 Aligned_cols=36 Identities=17% Similarity=0.217 Sum_probs=27.1
Q ss_pred HHHHHHhCCCCccEEEEecCCCCCCCChhHHHHhhhcceecEEe
Q 002309 498 FTAAVNLLPYAVPYQFVAFGDGHKNPSYTQLVDSITTGVFDAVV 541 (938)
Q Consensus 498 l~~la~~l~f~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~D~~~ 541 (938)
++...++.|. +++++.| .+|.....+|.+|++|+..
T Consensus 21 ~~~~~~~~Gl--~ve~~~f------~d~~~~n~AL~~G~iD~n~ 56 (241)
T 1xs5_A 21 AKEEVKKQHI--ELRIVEF------TNYVALNEAVMRGDILMNF 56 (241)
T ss_dssp HHHHHHTTTE--EEEEEEC------SCHHHHHHHHHHTSSSEEE
T ss_pred HHHHHHHcCC--eEEEEEc------CChHHHHHHHHcCCCCEec
Confidence 3445556684 4777777 4599999999999999864
No 239
>2dwu_A Glutamate racemase; isomerase; HET: DGL; 1.60A {Bacillus anthracis}
Probab=62.26 E-value=53 Score=33.18 Aligned_cols=119 Identities=12% Similarity=0.075 Sum_probs=63.9
Q ss_pred HHHHHHHhcCcEEEEcCCChhHHHHHHHhhccCCccEEEcccCCCCCCCCCCCceEEecCCchHHHHHHHHHHHhcCCcE
Q 002309 87 VEALRFMETDIVAIIGPQCSTVAHIVSYVSNELQVPLLSFGVTDPTLSSLQYPFFVRTTQSDSYQMTAVAEMVSYYGWNA 166 (938)
Q Consensus 87 ~~a~~li~~~V~aviGp~~s~~~~~va~~~~~~~iP~Is~~~~~~~l~~~~~p~~~r~~ps~~~~~~ai~~~l~~~~w~~ 166 (938)
+.+..|.+.++.+|+-+-++..+.++..+-+..++|+|... -.++...++..+-++
T Consensus 60 ~~~~~L~~~g~d~IViACNTas~~~l~~lr~~~~iPVigii------------------------ep~~~~A~~~~~~~r 115 (276)
T 2dwu_A 60 EMVEFLKQFPLKALVVACNTAAAATLAALQEALSIPVIGVI------------------------HPGARAAIKVTKKGK 115 (276)
T ss_dssp HHHHHHTTSCEEEEEECCHHHHHHHHHHHHHHCSSCEEESH------------------------HHHHHHHHHHCSSSE
T ss_pred HHHHHHHHCCCCEEEEeCCcHHHHHHHHHHHHCCCCEEecc------------------------HHHHHHHHHhcCCCe
Confidence 34444555599999987777665667777777899999620 011111223345678
Q ss_pred EEEEEEcCccccchHHHHHHHHhhc--ceEEEEEeecCCC------CCC----ChhhHHHHHHHHhcCCceEEEEEeCh
Q 002309 167 VSVIFVDNEYGRNGVSALNDKLAER--RCRISYKSGIPPE------SGV----NTGYVMDLLVKVALMESRVIVLHVSP 233 (938)
Q Consensus 167 vaii~~d~~~g~~~~~~l~~~l~~~--g~~v~~~~~~~~~------~~~----~~~d~~~~l~~lk~~~~~viv~~~~~ 233 (938)
|+++......-... +++.+++. +.+|... .-+.. ... ....+...++.+++.++|.||+.|..
T Consensus 116 IgVlaT~~T~~s~~---y~~~i~~~~~~~~v~~~-~~~~~v~~ve~g~~~~~~~~~~l~~~l~~l~~~~~D~IVLGCTh 190 (276)
T 2dwu_A 116 IGVIGTVGTIQSNM---YEKALHELDTYLKVHSH-ACPTLATVVENRLEDTAYVTQQVKQALLPLTKEDIDTLILGCTH 190 (276)
T ss_dssp EEEEECHHHHHTTH---HHHHHHHHCTTCEEEEE-ECTTHHHHHHHSTTCHHHHHHHHHHHHHHHHTSCCSEEEECSTT
T ss_pred EEEEeChhhhhhHH---HHHHHHHhCCCCEEEee-eCHHHHHHHHcCCcCCHHHHHHHHHHHHHHHhcCCCEEEECCCC
Confidence 99987554322222 23333332 4555322 11110 000 11235556666666778888886664
No 240
>4dik_A Flavoprotein; TM0755, electron transport, DI-iron protein; 1.75A {Thermotoga maritima} PDB: 4dil_A 1vme_A*
Probab=61.32 E-value=35 Score=36.87 Aligned_cols=92 Identities=18% Similarity=0.127 Sum_probs=61.8
Q ss_pred CcEEEEEEEcCcccc--chHHHHHHHHhhcceEEEEEeecCCCCCCChhhHHHHHHHHhcCCceEEEEEeCh------hh
Q 002309 164 WNAVSVIFVDNEYGR--NGVSALNDKLAERRCRISYKSGIPPESGVNTGYVMDLLVKVALMESRVIVLHVSP------SL 235 (938)
Q Consensus 164 w~~vaii~~d~~~g~--~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~lk~~~~~viv~~~~~------~~ 235 (938)
-++|+|+| ++.||. ..++.+.+.+.+.|+++......... ..+...++..+. +++.|++.+.. +.
T Consensus 265 ~~~v~I~Y-~S~yGnTe~mA~~ia~gl~~~Gv~~~~~~~~d~~----~~~~s~i~~~i~--~~~~ivlGspT~~~~~~p~ 337 (410)
T 4dik_A 265 KGKVTVIY-DSMYGFVENVMKKAIDSLKEKGFTPVVYKFSDEE----RPAISEILKDIP--DSEALIFGVSTYEAEIHPL 337 (410)
T ss_dssp TTEEEEEE-ECSSSHHHHHHHHHHHHHHHTTCEEEEEEECSSC----CCCHHHHHHHST--TCSEEEEEECCTTSSSCHH
T ss_pred ccceeeEE-ecccChHHHHHHHHHHHHHhcCCceEEEEeccCC----CCCHHHHHHHHH--hCCeEEEEeCCcCCcCCHH
Confidence 35899999 555665 45789999999999987644333332 456677777764 57788887664 34
Q ss_pred HHHHHHHHHHcCCCCCCeEEEEeCcch
Q 002309 236 GFQVFSVAKYLGMMGNGYVWIATDWLA 262 (938)
Q Consensus 236 ~~~~l~~a~~~g~~~~~~~wi~~~~~~ 262 (938)
...++.........++.-..+++-+|.
T Consensus 338 ~~~~l~~l~~~~~~~K~~~~FGSyGWs 364 (410)
T 4dik_A 338 MRFTLLEIIDKANYEKPVLVFGVHGWA 364 (410)
T ss_dssp HHHHHHHHHHHCCCCCEEEEEEECCCC
T ss_pred HHHHHHHHHhcccCCCEEEEEECCCCC
Confidence 556777777666655555666666664
No 241
>3s81_A Putative aspartate racemase; structural genomics, center for structural genomics of infec diseases, csgid, alpha beta fold, cytosol; 1.80A {Salmonella enterica subsp} PDB: 3s7z_A
Probab=61.06 E-value=11 Score=38.08 Aligned_cols=38 Identities=11% Similarity=0.027 Sum_probs=27.6
Q ss_pred HHHHHHHhcCcEEEEcCCChhHHHHHHHhhccCCccEEE
Q 002309 87 VEALRFMETDIVAIIGPQCSTVAHIVSYVSNELQVPLLS 125 (938)
Q Consensus 87 ~~a~~li~~~V~aviGp~~s~~~~~va~~~~~~~iP~Is 125 (938)
+.+..|.+.|+.+|+=+..+... .+..+-+..++|+|.
T Consensus 90 ~~~~~L~~~Gad~IVIaCNTah~-~l~~lr~~~~iPvig 127 (268)
T 3s81_A 90 RYLHMLEDAGAECIVIPCNTAHY-WFDDLQNVAKARMIS 127 (268)
T ss_dssp HHHHHHHHTTCSEEECSCSGGGG-GHHHHHHHCSSEEEC
T ss_pred HHHHHHHHcCCCEEEEeCCCHHH-HHHHHHHHCCCCEEc
Confidence 34445556699999988887655 556666777999996
No 242
>2gzm_A Glutamate racemase; enzyme, isomerase; HET: DGL; 1.99A {Bacillus anthracis}
Probab=60.74 E-value=28 Score=35.05 Aligned_cols=38 Identities=11% Similarity=0.279 Sum_probs=27.7
Q ss_pred HHHHHHhcCcEEEEcCCChhHHHHHHHhhccCCccEEE
Q 002309 88 EALRFMETDIVAIIGPQCSTVAHIVSYVSNELQVPLLS 125 (938)
Q Consensus 88 ~a~~li~~~V~aviGp~~s~~~~~va~~~~~~~iP~Is 125 (938)
.+..|.+.|+.+|+-+.++..+.++..+-+..++|+|.
T Consensus 57 ~~~~L~~~g~d~iviaCNTas~~~l~~lr~~~~iPvig 94 (267)
T 2gzm_A 57 MTEHLLDLNIKMLVIACNTATAVVLEEMQKQLPIPVVG 94 (267)
T ss_dssp HHHHHHTTTCSEEEECCHHHHHHHHHHHHHHCSSCEEE
T ss_pred HHHHHHHCCCCEEEEeCchhhHHHHHHHHHhCCCCEEe
Confidence 34444555999998877776655677777788999997
No 243
>1mkz_A Molybdenum cofactor biosynthesis protein B; MAD, WEAK anomalous signal, molybdopterin synthesis, structural genomics, PSI; HET: MSE; 1.60A {Escherichia coli} SCOP: c.57.1.1 PDB: 1r2k_B
Probab=60.74 E-value=31 Score=32.04 Aligned_cols=66 Identities=12% Similarity=0.108 Sum_probs=49.2
Q ss_pred CcEEEEEEEcCcccc---chHHHHHHHHhhcceEEEEEeecCCCCCCChhhHHHHHHHHhcC-CceEEEEEeCh
Q 002309 164 WNAVSVIFVDNEYGR---NGVSALNDKLAERRCRISYKSGIPPESGVNTGYVMDLLVKVALM-ESRVIVLHVSP 233 (938)
Q Consensus 164 w~~vaii~~d~~~g~---~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~lk~~-~~~viv~~~~~ 233 (938)
--+++||...|+-|+ .....+.+.+++.|+++.....++-+ .+.+...+++..+. ++|+||+.+..
T Consensus 10 ~~~v~Ii~tGdE~g~i~D~n~~~l~~~L~~~G~~v~~~~iv~Dd----~~~i~~~l~~a~~~~~~DlVittGG~ 79 (172)
T 1mkz_A 10 PTRIAILTVSNRRGEEDDTSGHYLRDSAQEAGHHVVDKAIVKEN----RYAIRAQVSAWIASDDVQVVLITGGT 79 (172)
T ss_dssp CCEEEEEEECSSCCGGGCHHHHHHHHHHHHTTCEEEEEEEECSC----HHHHHHHHHHHHHSSSCCEEEEESCC
T ss_pred CCEEEEEEEeCCCCcccCccHHHHHHHHHHCCCeEeEEEEeCCC----HHHHHHHHHHHHhcCCCCEEEeCCCC
Confidence 348899887777664 23467888999999998877666644 77888888887665 68999887543
No 244
>1jq5_A Glycerol dehydrogenase; oxidoreductase, NAD, glycerol metabolism; HET: NAD; 1.70A {Geobacillus stearothermophilus} SCOP: e.22.1.2 PDB: 1jpu_A* 1jqa_A*
Probab=60.53 E-value=28 Score=37.13 Aligned_cols=108 Identities=13% Similarity=0.012 Sum_probs=70.6
Q ss_pred CceEEecCCchHHHHHHHHHHHhcCCcEEEEEEEcCccccchHHHHHHHHhhcceEEEEEeecCCCCCCChhhHHHHHHH
Q 002309 139 PFFVRTTQSDSYQMTAVAEMVSYYGWNAVSVIFVDNEYGRNGVSALNDKLAERRCRISYKSGIPPESGVNTGYVMDLLVK 218 (938)
Q Consensus 139 p~~~r~~ps~~~~~~ai~~~l~~~~w~~vaii~~d~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~ 218 (938)
|+-+...+... ..+.++++.++ +++.+|++...+. ...+.+.+.|++.|+++.. ..+... .+.+.+...++.
T Consensus 10 p~~i~~G~g~~---~~l~~~l~~~g-~~~livtd~~~~~-~~~~~v~~~L~~~g~~~~~-~~~~ge--~~~~~v~~~~~~ 81 (370)
T 1jq5_A 10 PAKYVQGKNVI---TKIANYLEGIG-NKTVVIADEIVWK-IAGHTIVNELKKGNIAAEE-VVFSGE--ASRNEVERIANI 81 (370)
T ss_dssp CSEEEEETTGG---GGHHHHHTTTC-SEEEEEECHHHHH-HTHHHHHHHHHTTTCEEEE-EECCSS--CBHHHHHHHHHH
T ss_pred CCeEEECcCHH---HHHHHHHHHcC-CeEEEEEChHHHH-HHHHHHHHHHHHcCCeEEE-EeeCCC--CCHHHHHHHHHH
Confidence 44455555433 23556777788 9999998655443 4678888999988988753 234333 335678888888
Q ss_pred HhcCCceEEEEEeCh--hhHHHHHHHHHHcCCCCCCeEEEEeC
Q 002309 219 VALMESRVIVLHVSP--SLGFQVFSVAKYLGMMGNGYVWIATD 259 (938)
Q Consensus 219 lk~~~~~viv~~~~~--~~~~~~l~~a~~~g~~~~~~~wi~~~ 259 (938)
+++.++|+||-.+.+ -++..++... .| ..++-|-|.
T Consensus 82 ~~~~~~d~IIavGGGsv~D~aK~iA~~--~~---~p~i~IPTT 119 (370)
T 1jq5_A 82 ARKAEAAIVIGVGGGKTLDTAKAVADE--LD---AYIVIVPTA 119 (370)
T ss_dssp HHHTTCSEEEEEESHHHHHHHHHHHHH--HT---CEEEEEESS
T ss_pred HHhcCCCEEEEeCChHHHHHHHHHHHh--cC---CCEEEeccc
Confidence 888999999977664 4566666532 23 345666654
No 245
>3ce9_A Glycerol dehydrogenase; NP_348253.1, 3-dehydroquinate syntha structural genomics, joint center for structural genomics; HET: MSE; 2.37A {Clostridium acetobutylicum atcc 824}
Probab=60.05 E-value=32 Score=36.36 Aligned_cols=109 Identities=7% Similarity=0.056 Sum_probs=70.6
Q ss_pred CceEEecCCchHHHHHHHHHHHhcCCcEEEEEEEcCccccchHHHHHHHHhhcceEEEEEeecCCCCCCChhhHHHHHHH
Q 002309 139 PFFVRTTQSDSYQMTAVAEMVSYYGWNAVSVIFVDNEYGRNGVSALNDKLAERRCRISYKSGIPPESGVNTGYVMDLLVK 218 (938)
Q Consensus 139 p~~~r~~ps~~~~~~ai~~~l~~~~w~~vaii~~d~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~ 218 (938)
|+-+...+... ..+.++++.++.+++.+|++...+. ...+.+.+.+++.|+++..-...+ + .+.+.+... +.
T Consensus 12 p~~i~~G~g~~---~~l~~~l~~~g~~~~livtd~~~~~-~~~~~v~~~L~~~g~~~~~~~~~~-~--~~~~~v~~~-~~ 83 (354)
T 3ce9_A 12 PLILEVGNNKI---YNIGQIIKKGNFKRVSLYFGEGIYE-LFGETIEKSIKSSNIEIEAVETVK-N--IDFDEIGTN-AF 83 (354)
T ss_dssp CSEEEEESSCG---GGHHHHHGGGTCSEEEEEEETTHHH-HHHHHHHHHHHTTTCEEEEEEEEC-C--CBHHHHHHH-HT
T ss_pred CcEEEECCCHH---HHHHHHHHhcCCCeEEEEECccHHH-HHHHHHHHHHHHcCCeEEEEecCC-C--CCHHHHHHH-HH
Confidence 55555555433 2356677888889999999665543 456888889988898764322222 3 246677777 77
Q ss_pred HhcCCceEEEEEeCh--hhHHHHHHHHHHcCCCCCCeEEEEeCc
Q 002309 219 VALMESRVIVLHVSP--SLGFQVFSVAKYLGMMGNGYVWIATDW 260 (938)
Q Consensus 219 lk~~~~~viv~~~~~--~~~~~~l~~a~~~g~~~~~~~wi~~~~ 260 (938)
+++.++|+||-.+.+ -++..++... .+ ..++-|-|..
T Consensus 84 ~~~~~~d~IIavGGGsv~D~aK~vA~~--~~---~p~i~IPTT~ 122 (354)
T 3ce9_A 84 KIPAEVDALIGIGGGKAIDAVKYMAFL--RK---LPFISVPTST 122 (354)
T ss_dssp TSCTTCCEEEEEESHHHHHHHHHHHHH--HT---CCEEEEESCC
T ss_pred hhhcCCCEEEEECChHHHHHHHHHHhh--cC---CCEEEecCcc
Confidence 888899999977664 4566666532 23 3566666544
No 246
>1nh8_A ATP phosphoribosyltransferase; prtase, de novo His biosynthesis, PRPP, structural genomics, PSI, protei structure initiative; HET: AMP HIS; 1.80A {Mycobacterium tuberculosis H37RV} SCOP: c.94.1.1 d.58.5.3 PDB: 1nh7_A*
Probab=59.03 E-value=31 Score=35.11 Aligned_cols=103 Identities=11% Similarity=0.023 Sum_probs=63.0
Q ss_pred CCCChHHhhhCCCCeeEEeCchHHHHHHHhcccccccccccCCHHHHHHHHhcCCCCCceEEEEecchhHHHHHhcCCcE
Q 002309 689 PINGIESLRKSDDPIGYQEGSFAEYYLSQELNISKSRLVALRTPEDYAKALKDGPGKGGVAAVVDERPYVELFLSSQCSF 768 (938)
Q Consensus 689 ~i~s~~dL~~~~~~i~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~a~i~~~~~~~~~~~~~~~l 768 (938)
.+++++||. +.+|+..-......||. +.+.. .+++...-.-|..-.+ |-.|++++-.....-+..+ +|
T Consensus 120 ~~~~~~~l~--~~RIATkYp~l~r~yf~-~~gi~-~~Ii~l~GsvE~aP~~------GlADaIvDiVsTG~TLraN--gL 187 (304)
T 1nh8_A 120 RNWTTADLA--GMRIATAYPNLVRKDLA-TKGIE-ATVIRLDGAVEISVQL------GVADAIADVVGSGRTLSQH--DL 187 (304)
T ss_dssp SCCCGGGGT--TCEEEESCHHHHHHHHH-HHTCC-CEEEECSSCCTHHHHT------TSCSEEEEEESSSHHHHHT--TE
T ss_pred CcCChHHhC--CCEEEeCcHHHHHHHHH-HCCCe-EEEEECCCceeeccCC------CcccEEEEEeCChHHHHHC--cC
Confidence 455788886 78888877777888994 45554 4555555444444333 6678888866655544333 57
Q ss_pred EEeCccccccceEeeecCCCc-c--hhhHHHHHHhhhc
Q 002309 769 RIVGQEFTKSGWGFAFPRDSP-L--AVDLSSAILELAE 803 (938)
Q Consensus 769 ~~~~~~~~~~~~~~~~~k~sp-l--~~~i~~~il~l~e 803 (938)
..+++.+....-.+..++.+. . ...++..+.+++.
T Consensus 188 ~~i~e~I~~SsA~LI~n~~s~~~~k~~~i~~l~~rl~~ 225 (304)
T 1nh8_A 188 VAFGEPLCDSEAVLIERAGTDGQDQTEARDQLVARVQG 225 (304)
T ss_dssp EEEEEEEEEECEEEEEEC--------CHHHHHHHHHHH
T ss_pred EEcccEEEEEEEEEEEccccchhhhHHHHHHHHHHHHH
Confidence 777555566666777777762 2 2356666666653
No 247
>3hn0_A Nitrate transport protein; ABC transporter, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; 1.75A {Parabacteroides distasonis}
Probab=57.42 E-value=18 Score=36.84 Aligned_cols=63 Identities=14% Similarity=0.211 Sum_probs=41.4
Q ss_pred hhhCCCCeeEE-eCchHHHHHH---HhcccccccccccC-CHHHHHHHHhcCCCCCceEEEEecchhHHHHHhcC
Q 002309 696 LRKSDDPIGYQ-EGSFAEYYLS---QELNISKSRLVALR-TPEDYAKALKDGPGKGGVAAVVDERPYVELFLSSQ 765 (938)
Q Consensus 696 L~~~~~~i~~~-~~s~~~~~~~---~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~g~~~a~i~~~~~~~~~~~~~ 765 (938)
|. |++|++. .|+....++. ++.++ ..+++... ++.+...++.+ |++||.+...+++.....+.
T Consensus 94 Lk--GK~Iav~~~gs~~~~ll~~~L~~~Gl-dv~~~~~~~~~~~~~~al~~----G~vDa~~~~eP~~~~a~~~~ 161 (283)
T 3hn0_A 94 LK--EPALYVFGNGTTPDILTRYYLGRQRL-DYPLNYAFNTAGEITQGILA----GKVNRAVLGEPFLSIALRKD 161 (283)
T ss_dssp CC--SCCEECSSTTSHHHHHHHHHHHHHTC-CCCEECSCCSHHHHHHHHHH----TSCSEEEECTTHHHHHHHHC
T ss_pred CC--CCEEEecCCCCcHHHHHHHHHHHcCC-ceEEEEccCCHHHHHHHHHc----CCCCEEEecccHHHHHHhhC
Confidence 55 8899975 5665444332 23344 23444444 68999999999 89999988778776655444
No 248
>2oho_A Glutamate racemase; isomerase; 2.25A {Streptococcus pyogenes m1 gas} PDB: 2ohg_A 2ohv_A*
Probab=57.11 E-value=33 Score=34.67 Aligned_cols=37 Identities=16% Similarity=0.192 Sum_probs=26.9
Q ss_pred HHHHHhcCcEEEEcCCChhHHHHHHHhhccCCccEEE
Q 002309 89 ALRFMETDIVAIIGPQCSTVAHIVSYVSNELQVPLLS 125 (938)
Q Consensus 89 a~~li~~~V~aviGp~~s~~~~~va~~~~~~~iP~Is 125 (938)
+..|.+.++.+|+-+.++..+.++..+-+..++|+|.
T Consensus 67 ~~~L~~~g~d~iviaCNTas~~~l~~lr~~~~iPvig 103 (273)
T 2oho_A 67 VNFLLTQNVKMIVFACNTATAVAWEEVKAALDIPVLG 103 (273)
T ss_dssp HHHHHTTTCSEEEECCHHHHHHHHHHHHHHCSSCEEE
T ss_pred HHHHHHCCCCEEEEeCchHhHHHHHHHHHhCCCCEEe
Confidence 3344455899998877776656666777778999996
No 249
>3g1w_A Sugar ABC transporter; sugar-binding protein, bacillus halod target 11229F, transport protein, structural genomics; 2.02A {Bacillus halodurans c-125}
Probab=57.00 E-value=21 Score=36.55 Aligned_cols=80 Identities=10% Similarity=0.127 Sum_probs=57.1
Q ss_pred cEEEEEEE--cCccccchHHHHHHHHhhcceEEEEEeecCCCCCCChhhHHHHHHHHhcCCceEEEEEeChh-hHHHHHH
Q 002309 165 NAVSVIFV--DNEYGRNGVSALNDKLAERRCRISYKSGIPPESGVNTGYVMDLLVKVALMESRVIVLHVSPS-LGFQVFS 241 (938)
Q Consensus 165 ~~vaii~~--d~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~lk~~~~~viv~~~~~~-~~~~~l~ 241 (938)
++|++|.. ++.|.......+.+++++.|+.+.... ... .+.......++.+...++|.||+..... .....++
T Consensus 5 ~~I~~i~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~--~~~--~~~~~~~~~i~~l~~~~vdgiIi~~~~~~~~~~~~~ 80 (305)
T 3g1w_A 5 ETYMMITFQSGMDYWKRCLKGFEDAAQALNVTVEYRG--AAQ--YDIQEQITVLEQAIAKNPAGIAISAIDPVELTDTIN 80 (305)
T ss_dssp CEEEEEESSTTSTHHHHHHHHHHHHHHHHTCEEEEEE--CSS--SCHHHHHHHHHHHHHHCCSEEEECCSSTTTTHHHHH
T ss_pred ceEEEEEccCCChHHHHHHHHHHHHHHHcCCEEEEeC--CCc--CCHHHHHHHHHHHHHhCCCEEEEcCCCHHHHHHHHH
Confidence 57888875 456777888999999999999886522 111 2355566777777778999999875443 3456788
Q ss_pred HHHHcCC
Q 002309 242 VAKYLGM 248 (938)
Q Consensus 242 ~a~~~g~ 248 (938)
++.+.|+
T Consensus 81 ~~~~~~i 87 (305)
T 3g1w_A 81 KAVDAGI 87 (305)
T ss_dssp HHHHTTC
T ss_pred HHHHCCC
Confidence 8887775
No 250
>2qsx_A Putative transcriptional regulator, LYSR family; the putative transcriptional regulator, PSI-2, structure initiative, MCSG; 1.64A {Vibrio parahaemolyticus}
Probab=55.63 E-value=1.1e+02 Score=28.95 Aligned_cols=70 Identities=10% Similarity=-0.049 Sum_probs=42.8
Q ss_pred cccCCHHHHHHHHhcCCCCCceEEEEecchhHHHHHhcCCcEEEeCc--cccccceEeeecCCCcchhhHHHHHHhhh
Q 002309 727 VALRTPEDYAKALKDGPGKGGVAAVVDERPYVELFLSSQCSFRIVGQ--EFTKSGWGFAFPRDSPLAVDLSSAILELA 802 (938)
Q Consensus 727 ~~~~~~~~~~~~l~~~~~~g~~~a~i~~~~~~~~~~~~~~~l~~~~~--~~~~~~~~~~~~k~spl~~~i~~~il~l~ 802 (938)
..+++.....+++.. |-.-+++.+....... . ...+..+.. ......++++.+++......+...+..+.
T Consensus 140 ~~~~~~~~~~~~v~~----G~Gia~lp~~~~~~~l-~-~g~L~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~f~~~l~ 211 (218)
T 2qsx_A 140 VGFEHFYLACEAVRM----EKGLALLPDFMAQFSI-L-RGDIQHIGNLKLHSGYGYYVVIPNFRLTSRKVALFHDWLK 211 (218)
T ss_dssp BCCSSHHHHHHHHHT----TCCBEEEEHHHHHHHH-H-TTSEEEEEEEEEEEEEEEEEECCTTCTTCHHHHHHHHHHH
T ss_pred ceeccHHHHHHHHHh----CCCEEEecHHHHHHHH-H-CCCccccCccccCCCceEEEEeccccCCCHHHHHHHHHHH
Confidence 456788889999998 5556776654433332 2 234443321 12335678888998777777766665554
No 251
>3spc_A Inward-rectifier K+ channel KIR2.2; PIP, membrane protein, lipid, receptor, metal transport; HET: P8P; 2.45A {Gallus gallus} PDB: 3jyc_A* 3spi_A* 3sph_A* 3spj_A 3spg_A*
Probab=54.75 E-value=12 Score=39.00 Aligned_cols=61 Identities=13% Similarity=0.127 Sum_probs=52.2
Q ss_pred ccchhhhhHHHHHHHhhhhhhhhhhcccCc--cccchhHHHHHHHHHHHHHHhhhhhhhhhhhhccccc
Q 002309 621 RQVITILWFSLSTLFFAHIAIFVILAEENT--VSTLGRLVLIIWLFVVLIINSSYTASLTSILTVQQLY 687 (938)
Q Consensus 621 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~p--~s~s~R~~~~~w~~~~lil~s~Yta~L~s~Lt~~~~~ 687 (938)
.++...+||++.++..-| ++...| .+..++++..+=.+.++++.+.-++-+.+-++.|+-.
T Consensus 93 ~sf~~af~fSv~T~TTvG------YGd~~p~~~~~~~~~l~~~~~l~G~~l~a~~~giv~ak~srp~~r 155 (343)
T 3spc_A 93 NGFVAAFLFSIETQTTIG------YGFRCVTEECPLAVFMVVVQSIVGCIIDSFMIGAIMAKMARPKKR 155 (343)
T ss_dssp CSHHHHHHHHHHHHSCCC------CSSSEECSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCSCC
T ss_pred CCHHHHhheeeeeeEeec------CCCccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhh
Confidence 468899999999998877 455554 5788999999999999999999999999999887643
No 252
>3hl0_A Maleylacetate reductase; structur genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; HET: MSE NAD EPE; 1.60A {Agrobacterium tumefaciens str}
Probab=54.03 E-value=20 Score=37.99 Aligned_cols=97 Identities=12% Similarity=0.081 Sum_probs=64.2
Q ss_pred HHHHHHHHhcCCcEEEEEEEcCccccchHHHHHHHHhhcceEEEEEeecCCCCCCChhhHHHHHHHHhcCCceEEEEEeC
Q 002309 153 TAVAEMVSYYGWNAVSVIFVDNEYGRNGVSALNDKLAERRCRISYKSGIPPESGVNTGYVMDLLVKVALMESRVIVLHVS 232 (938)
Q Consensus 153 ~ai~~~l~~~~w~~vaii~~d~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~lk~~~~~viv~~~~ 232 (938)
..+.++++.++.+++.+|++.... ...+.+.+.|++.++.+ +. .+.++ .+.+.+...++.+++.++|+||-.+.
T Consensus 23 ~~l~~~l~~~g~~r~liVtd~~~~--~~~~~v~~~L~~~~~~v-~~-~v~~~--p~~~~v~~~~~~~~~~~~D~IIavGG 96 (353)
T 3hl0_A 23 ADVAEEIRRLGLSRALVLSTPQQK--GDAEALASRLGRLAAGV-FS-EAAMH--TPVEVTKTAVEAYRAAGADCVVSLGG 96 (353)
T ss_dssp GGHHHHHHHTTCCCEEEECCGGGH--HHHHHHHHHHGGGEEEE-EC-CCCTT--CBHHHHHHHHHHHHHTTCSEEEEEES
T ss_pred HHHHHHHHHhCCCEEEEEecCchh--hHHHHHHHHHhhCCcEE-ec-CcCCC--CcHHHHHHHHHHHhccCCCEEEEeCC
Confidence 346677888999999999865543 35678888888876543 22 22333 34677888888888999999988776
Q ss_pred hh--hHHHHHHHHHHcCCCCCCeEEEEeCc
Q 002309 233 PS--LGFQVFSVAKYLGMMGNGYVWIATDW 260 (938)
Q Consensus 233 ~~--~~~~~l~~a~~~g~~~~~~~wi~~~~ 260 (938)
+. ++..++... .+ ..++-|-|..
T Consensus 97 Gs~iD~aK~iA~~--~~---~p~i~IPTTa 121 (353)
T 3hl0_A 97 GSTTGLGKAIALR--TD---AAQIVIPTTY 121 (353)
T ss_dssp HHHHHHHHHHHHH--HC---CEEEEEECSS
T ss_pred cHHHHHHHHHHhc--cC---CCEEEEeCCc
Confidence 54 455555442 23 3455565544
No 253
>3fd3_A Chromosome replication initiation inhibitor prote; structural genomics, LYSR, PSI-2, structure initiative; HET: MSE P33 PG4; 1.70A {Agrobacterium tumefaciens str}
Probab=53.74 E-value=96 Score=28.69 Aligned_cols=67 Identities=9% Similarity=0.001 Sum_probs=40.2
Q ss_pred eeeHHHHHHHHHhCCCCccEEEEecCCCCCCCChhHHHHhhhcceecEEeccEeeecCceeeeeeccceecccEEEEEec
Q 002309 492 GFCIDVFTAAVNLLPYAVPYQFVAFGDGHKNPSYTQLVDSITTGVFDAVVGDITIVTNRTKIVDFSQPYAASGLVVVVPF 571 (938)
Q Consensus 492 G~~~dll~~la~~l~f~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~D~~~~~~~~t~~r~~~v~fs~p~~~~~~~~lv~~ 571 (938)
.+-.+++..+.++.+ +++.+.. ++...+.+.+.+|..|+++..-. .....+. +.++....++++++.
T Consensus 15 ~~l~~~l~~f~~~~~--v~l~l~~-------~~~~~~~~~l~~g~d~~~i~~~~---~~~~~l~-~~~l~~~~~~~v~~~ 81 (208)
T 3fd3_A 15 TWFLDAVSKFTGGSD--YLVNIAV-------DDQDHTVEWLRGGRVLAAVTAHD---KPVQGCR-VTPLGVLRYHATASP 81 (208)
T ss_dssp TTHHHHHHHHHHTSS--CEEEEEE-------CCSSCHHHHHHTTSCSEEEESCC---SCCTTCE-EEEEEEEEEEEEECH
T ss_pred HHHHHHHHHHHhhcC--eEEEEEe-------CCcHhHHHHHhcCcceEEEecCC---CCCCCce-EEEccceEEEEEECh
Confidence 456778888888885 5566665 44567889999995554443211 1111222 346666677776654
No 254
>3mz1_A Putative transcriptional regulator; structural genomics, PSI-2, protein structure initiative, MI center for STR uctural genomics, MCSG; 1.88A {Sinorhizobium meliloti}
Probab=53.73 E-value=21 Score=36.15 Aligned_cols=71 Identities=13% Similarity=-0.006 Sum_probs=43.0
Q ss_pred ccccCCHHHHHHHHhcCCCCCceEEEEecchhHHHHHhcCCcEEEeCc--cccccceEeeecCCCcchhhHHHHHHhhh
Q 002309 726 LVALRTPEDYAKALKDGPGKGGVAAVVDERPYVELFLSSQCSFRIVGQ--EFTKSGWGFAFPRDSPLAVDLSSAILELA 802 (938)
Q Consensus 726 ~~~~~~~~~~~~~l~~~~~~g~~~a~i~~~~~~~~~~~~~~~l~~~~~--~~~~~~~~~~~~k~spl~~~i~~~il~l~ 802 (938)
...+++.......+.. |...+++-+.....+. .. ..+..+.. ......++++.+++.+....+...+..+.
T Consensus 216 ~~~~~~~~~~~~~v~~----g~Gi~~lp~~~~~~~~-~~-~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~f~~~l~ 288 (300)
T 3mz1_A 216 TMAANESTTYLAAARA----GLGVIQAPLFMVREDL-RN-GTMVPVLPDWQVEPMPIYLVYPPNRHLSSRLRVFADWVV 288 (300)
T ss_dssp EEEESSHHHHHHHHHT----TCCBEEEEHHHHHHHH-HH-TSEEECCTTCBCCCEEEEEEECTTCCCCHHHHHHHHHHH
T ss_pred eEEECCHHHHHHHHHh----CCCEEeccHHHHHHHH-hC-CCeEEeCCCcCCCCccEEEEEcCcccCcHHHHHHHHHHH
Confidence 4456888889999998 5555666554443332 22 24444432 33455678888988776666655555443
No 255
>3ist_A Glutamate racemase; structural genomics, cell WALL biogenesis/degradation, isomerase, peptidoglycan synthesis; HET: MSE; 1.65A {Listeria monocytogenes} PDB: 3hfr_A* 3isv_A*
Probab=53.26 E-value=50 Score=33.20 Aligned_cols=38 Identities=11% Similarity=0.206 Sum_probs=28.4
Q ss_pred HHHHHHhcCcEEEEcCCChhHHHHHHHhhccCCccEEE
Q 002309 88 EALRFMETDIVAIIGPQCSTVAHIVSYVSNELQVPLLS 125 (938)
Q Consensus 88 ~a~~li~~~V~aviGp~~s~~~~~va~~~~~~~iP~Is 125 (938)
.+..|.+.|+.+|+=+..+..+.++..+-+..++|+|.
T Consensus 59 ~~~~L~~~g~~~IVIACNTa~~~al~~lr~~~~iPvig 96 (269)
T 3ist_A 59 MTNFLVDRGIKMLVIACNTATAAALYDIREKLDIPVIG 96 (269)
T ss_dssp HHHHHHHTTCSEEEECCHHHHHHHHHHHHHHCSSCEEE
T ss_pred HHHHHHHCCCCEEEEeCCCccHHHHHHHHHhcCCCEEe
Confidence 34445555999999877777766677777888999996
No 256
>3h75_A Periplasmic sugar-binding domain protein; protein structure initiative II (PSI II), sugar binding PROT alpha/beta fold; 1.60A {Pseudomonas fluorescens pf-5}
Probab=52.87 E-value=32 Score=36.12 Aligned_cols=80 Identities=6% Similarity=0.021 Sum_probs=56.8
Q ss_pred CcEEEEEEEc---CccccchHHHHHHHHhhcceEEEEEeecCCCCCCChhhHHHHHHHHhc--CCceEEEEEeChhhHHH
Q 002309 164 WNAVSVIFVD---NEYGRNGVSALNDKLAERRCRISYKSGIPPESGVNTGYVMDLLVKVAL--MESRVIVLHVSPSLGFQ 238 (938)
Q Consensus 164 w~~vaii~~d---~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~lk~--~~~~viv~~~~~~~~~~ 238 (938)
-.+|++|..+ +.|.......+.+++++.|+.+.... . . .+.......+..+.. .++|.||+.........
T Consensus 3 ~~~Ig~i~p~~~~~~f~~~~~~g~~~~a~~~g~~~~~~~--~-~--~~~~~~~~~i~~~i~~~~~vDgiIi~~~~~~~~~ 77 (350)
T 3h75_A 3 LTSVVFLNPGNSTETFWVSYSQFMQAAARDLGLDLRILY--A-E--RDPQNTLQQARELFQGRDKPDYLMLVNEQYVAPQ 77 (350)
T ss_dssp CCEEEEEECSCTTCHHHHHHHHHHHHHHHHHTCEEEEEE--C-T--TCHHHHHHHHHHHHHSSSCCSEEEEECCSSHHHH
T ss_pred CCEEEEECCCCCCChHHHHHHHHHHHHHHHcCCeEEEEE--C-C--CCHHHHHHHHHHHHhcCCCCCEEEEeCchhhHHH
Confidence 3678998864 26778888999999999999876542 1 1 224444556666666 58999999765556677
Q ss_pred HHHHHHHcCC
Q 002309 239 VFSVAKYLGM 248 (938)
Q Consensus 239 ~l~~a~~~g~ 248 (938)
+++.+.+.|+
T Consensus 78 ~~~~~~~~gi 87 (350)
T 3h75_A 78 ILRLSQGSGI 87 (350)
T ss_dssp HHHHHTTSCC
T ss_pred HHHHHHhCCC
Confidence 8888887775
No 257
>3gbv_A Putative LACI-family transcriptional regulator; NYSGXRC, PSI-II, 11231J, structur genomics, protein structure initiative; 2.20A {Bacteroides fragilis}
Probab=52.57 E-value=35 Score=34.70 Aligned_cols=84 Identities=8% Similarity=0.014 Sum_probs=58.2
Q ss_pred CCcEEEEEEEc---CccccchHHHHHHHHhhc-ceEEEEEeecCCCCCCChhhHHHHHHHHhcCCceEEEEEeChh-hHH
Q 002309 163 GWNAVSVIFVD---NEYGRNGVSALNDKLAER-RCRISYKSGIPPESGVNTGYVMDLLVKVALMESRVIVLHVSPS-LGF 237 (938)
Q Consensus 163 ~w~~vaii~~d---~~~g~~~~~~l~~~l~~~-g~~v~~~~~~~~~~~~~~~d~~~~l~~lk~~~~~viv~~~~~~-~~~ 237 (938)
.-++|+++..+ +.|.......+.+++++. |..+......... .+.......++.+...+.|.||+..... ...
T Consensus 7 ~~~~Igvi~~~~~~~~~~~~~~~gi~~~a~~~~g~~~~~~~~~~~~--~~~~~~~~~i~~l~~~~vdgiii~~~~~~~~~ 84 (304)
T 3gbv_A 7 KKYTFACLLPKHLEGEYWTDVQKGIREAVTTYSDFNISANITHYDP--YDYNSFVATSQAVIEEQPDGVMFAPTVPQYTK 84 (304)
T ss_dssp CCEEEEEEEECCCTTSHHHHHHHHHHHHHHHTGGGCEEEEEEEECS--SCHHHHHHHHHHHHTTCCSEEEECCSSGGGTH
T ss_pred CcceEEEEecCCCCchHHHHHHHHHHHHHHHHHhCCeEEEEEcCCC--CCHHHHHHHHHHHHhcCCCEEEECCCChHHHH
Confidence 44678887754 557778888999999988 7776554332211 2355566778888888999999876544 446
Q ss_pred HHHHHHHHcCC
Q 002309 238 QVFSVAKYLGM 248 (938)
Q Consensus 238 ~~l~~a~~~g~ 248 (938)
..++.+.+.|+
T Consensus 85 ~~~~~~~~~~i 95 (304)
T 3gbv_A 85 GFTDALNELGI 95 (304)
T ss_dssp HHHHHHHHHTC
T ss_pred HHHHHHHHCCC
Confidence 67777877675
No 258
>1r9l_A Glycine betaine-binding periplasmic protein; periplasmic binding protein, cation-PI interactions, tryptophan BOX, protein binding; 1.59A {Escherichia coli} SCOP: c.94.1.1 PDB: 1r9q_A*
Probab=51.64 E-value=36 Score=35.12 Aligned_cols=39 Identities=18% Similarity=0.080 Sum_probs=27.7
Q ss_pred HHHHHHHHhCCCCccEEEEecCCCCCCCChhHHHHhhhcceecEEec
Q 002309 496 DVFTAAVNLLPYAVPYQFVAFGDGHKNPSYTQLVDSITTGVFDAVVG 542 (938)
Q Consensus 496 dll~~la~~l~f~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~D~~~~ 542 (938)
.+++.+.+.+|+++++.. + .+..-+...|.+|++|+...
T Consensus 25 ~i~~~~Le~~Gy~Ve~~~--~------~~~~~~~~Al~~G~iDi~~e 63 (309)
T 1r9l_A 25 LLVSRALEKLGYTVNKPS--E------VDYNVGYTSLASGDATFTAV 63 (309)
T ss_dssp HHHHHHHHHTTCEECCCE--E------CCHHHHHHHHHHTSSCEEEE
T ss_pred HHHHHHHHHcCCCeEEee--c------CchHHHHHHHhcCCceEEec
Confidence 556666677898755432 1 34567788999999999865
No 259
>3l49_A ABC sugar (ribose) transporter, periplasmic substrate-binding subunit; sugar binding/transporter, structural genomics, PSI; HET: UNL; 2.30A {Rhodobacter sphaeroides}
Probab=51.28 E-value=40 Score=34.02 Aligned_cols=79 Identities=6% Similarity=0.054 Sum_probs=57.7
Q ss_pred cEEEEEEE--cCccccchHHHHHHHHhhcceEEEEEeecCCCCCCChhhHHHHHHHHhcCCceEEEEEeCh-hhHHHHHH
Q 002309 165 NAVSVIFV--DNEYGRNGVSALNDKLAERRCRISYKSGIPPESGVNTGYVMDLLVKVALMESRVIVLHVSP-SLGFQVFS 241 (938)
Q Consensus 165 ~~vaii~~--d~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~lk~~~~~viv~~~~~-~~~~~~l~ 241 (938)
++|+++.. ++.|.......+.+++++.|+.+..... . .+.......++.+...+.|.||+.... ......++
T Consensus 6 ~~Ig~i~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~-~----~~~~~~~~~~~~l~~~~vdgiIi~~~~~~~~~~~~~ 80 (291)
T 3l49_A 6 KTIGITAIGTDHDWDLKAYQAQIAEIERLGGTAIALDA-G----RNDQTQVSQIQTLIAQKPDAIIEQLGNLDVLNPWLQ 80 (291)
T ss_dssp CEEEEEESCCSSHHHHHHHHHHHHHHHHTTCEEEEEEC-T----TCHHHHHHHHHHHHHHCCSEEEEESSCHHHHHHHHH
T ss_pred cEEEEEeCCCCChHHHHHHHHHHHHHHHcCCEEEEEcC-C----CCHHHHHHHHHHHHHcCCCEEEEeCCChhhhHHHHH
Confidence 57888886 4556777889999999999998765422 1 234555677788878899999987654 45566788
Q ss_pred HHHHcCC
Q 002309 242 VAKYLGM 248 (938)
Q Consensus 242 ~a~~~g~ 248 (938)
.+.+.|+
T Consensus 81 ~~~~~~i 87 (291)
T 3l49_A 81 KINDAGI 87 (291)
T ss_dssp HHHHTTC
T ss_pred HHHHCCC
Confidence 8888775
No 260
>3jzd_A Iron-containing alcohol dehydrogenase; YP_298327.1, putative alcohol dehedrogenase, structural GENO joint center for structural genomics; HET: MSE NAD PG4 P6G PGE; 2.10A {Ralstonia eutropha}
Probab=50.40 E-value=19 Score=38.12 Aligned_cols=97 Identities=19% Similarity=0.117 Sum_probs=64.2
Q ss_pred HHHHHHHHhcCCcEEEEEEEcCccccchHHHHHHHHhhcceEEEEEeecCCCCCCChhhHHHHHHHHhcCCceEEEEEeC
Q 002309 153 TAVAEMVSYYGWNAVSVIFVDNEYGRNGVSALNDKLAERRCRISYKSGIPPESGVNTGYVMDLLVKVALMESRVIVLHVS 232 (938)
Q Consensus 153 ~ai~~~l~~~~w~~vaii~~d~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~lk~~~~~viv~~~~ 232 (938)
..+.++++.++.+++.+|++...++ ..+.+.+.|++.++.+ +. .+.++ .+.+.+...++.+++.++|+||-.+.
T Consensus 25 ~~l~~~l~~~g~~r~liVtd~~~~~--~~~~v~~~L~~~~~~~-f~-~v~~~--p~~~~v~~~~~~~~~~~~D~IIavGG 98 (358)
T 3jzd_A 25 SQVAAEVERLGAKRALVLCTPNQQA--EAERIADLLGPLSAGV-YA-GAVMH--VPIESARDATARAREAGADCAVAVGG 98 (358)
T ss_dssp GGHHHHHHHTTCSCEEEECCGGGHH--HHHHHHHHHGGGEEEE-EC-CCCTT--CBHHHHHHHHHHHHHHTCSEEEEEES
T ss_pred HHHHHHHHHhCCCeEEEEeCCcHHH--HHHHHHHHhccCCEEE-ec-CCcCC--CCHHHHHHHHHHhhccCCCEEEEeCC
Confidence 3466778889999999998665443 4678888888775433 22 22322 34667788888888889999998876
Q ss_pred hh--hHHHHHHHHHHcCCCCCCeEEEEeCc
Q 002309 233 PS--LGFQVFSVAKYLGMMGNGYVWIATDW 260 (938)
Q Consensus 233 ~~--~~~~~l~~a~~~g~~~~~~~wi~~~~ 260 (938)
+. ++..++... .+ ..++-|-|..
T Consensus 99 GsviD~aK~iA~~--~~---~p~i~IPTT~ 123 (358)
T 3jzd_A 99 GSTTGLGKAIALE--TG---MPIVAIPTTY 123 (358)
T ss_dssp HHHHHHHHHHHHH--HC---CCEEEEECSS
T ss_pred cHHHHHHHHHHhc--cC---CCEEEEeCCc
Confidence 54 555555442 23 3456666543
No 261
>1zuw_A Glutamate racemase 1; (R)-glutamate, peptidoglycan biosynthesi isomerase; HET: DGL; 1.75A {Bacillus subtilis}
Probab=49.66 E-value=1.1e+02 Score=30.72 Aligned_cols=119 Identities=12% Similarity=0.107 Sum_probs=66.1
Q ss_pred HHHHHHHHh-cCcEEEEcCCChhHHHHHHHhhccCCccEEEcccCCCCCCCCCCCceEEecCCchHHHHHHH-HHHHhcC
Q 002309 86 MVEALRFME-TDIVAIIGPQCSTVAHIVSYVSNELQVPLLSFGVTDPTLSSLQYPFFVRTTQSDSYQMTAVA-EMVSYYG 163 (938)
Q Consensus 86 ~~~a~~li~-~~V~aviGp~~s~~~~~va~~~~~~~iP~Is~~~~~~~l~~~~~p~~~r~~ps~~~~~~ai~-~~l~~~~ 163 (938)
.+.+..|.+ .++.+|+=+.++..+.++..+-+..++|+|.. .++.+ ..++.-+
T Consensus 55 ~~~~~~L~~~~g~d~iViACNTas~~~l~~lr~~~~iPVigi-------------------------iepa~~~A~~~~~ 109 (272)
T 1zuw_A 55 WELTNYLLENHHIKMLVIACNTATAIALDDIQRSVGIPVVGV-------------------------IQPGARAAIKVTD 109 (272)
T ss_dssp HHHHHHHHHHSCCSEEEECCHHHHHHHHHHHHHHCSSCEEES-------------------------HHHHHHHHHHHCS
T ss_pred HHHHHHHHhhcCCCEEEEeCchhhHHHHHHHHHHCCCCEEcc-------------------------cHHHHHHHHHhcC
Confidence 445556667 79999988777776656777777889999963 11111 1223345
Q ss_pred CcEEEEEEEcCccccchHHHHHHHHhhc--ceEEEEEee------cCCCCCCC----hhhHHHHHHHHhcCCceEEEEEe
Q 002309 164 WNAVSVIFVDNEYGRNGVSALNDKLAER--RCRISYKSG------IPPESGVN----TGYVMDLLVKVALMESRVIVLHV 231 (938)
Q Consensus 164 w~~vaii~~d~~~g~~~~~~l~~~l~~~--g~~v~~~~~------~~~~~~~~----~~d~~~~l~~lk~~~~~viv~~~ 231 (938)
-++|+++......-.. .+++.+++. |.+|..... +..+ ..+ ...+...++.+++.++|.||+.|
T Consensus 110 ~~rIgVlaT~~T~~s~---~y~~~i~~~~~~~~v~~~~~~~~v~~ve~g-~~~~~~~~~~l~~~l~~l~~~~~D~iVLGC 185 (272)
T 1zuw_A 110 NQHIGVIGTENTIKSN---AYEEALLALNPDLKVENLACPLLVPFVESG-KFLDQTADEIVKTSLYPLKDTSIDSLILGC 185 (272)
T ss_dssp SSEEEEEECHHHHHTT---HHHHHHHHHCTTCEEEEEECTTHHHHHTSC-CCCHHHHHHHHHHHHHHHHHSCCSEEEEES
T ss_pred CCEEEEEEChhhhhhh---HHHHHHHHhCCCCEEEeccCHHHHHHHHCC-CCCCHHHHHHHHHHHHHHHhcCCCEEEECc
Confidence 6788888754322111 233444433 555532110 1111 011 23355556666667888888877
Q ss_pred Ch
Q 002309 232 SP 233 (938)
Q Consensus 232 ~~ 233 (938)
..
T Consensus 186 Th 187 (272)
T 1zuw_A 186 TH 187 (272)
T ss_dssp TT
T ss_pred cC
Confidence 65
No 262
>3isp_A HTH-type transcriptional regulator RV1985C/MT2039; ROD shaped structure, DNA binding domain, regulatory domain, DNA-binding; 2.70A {Mycobacterium tuberculosis}
Probab=49.51 E-value=1.3e+02 Score=30.10 Aligned_cols=68 Identities=12% Similarity=-0.050 Sum_probs=39.6
Q ss_pred cccccCCHHHHHHHHhcCCCCCceEEEEecchhHHHHHhcCCcEEEeCccccccceEeeecCCCcchhhHHHHHHh
Q 002309 725 RLVALRTPEDYAKALKDGPGKGGVAAVVDERPYVELFLSSQCSFRIVGQEFTKSGWGFAFPRDSPLAVDLSSAILE 800 (938)
Q Consensus 725 ~~~~~~~~~~~~~~l~~~~~~g~~~a~i~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~k~spl~~~i~~~il~ 800 (938)
....+++.......+.. |...+++-+.....+. .. ..+..+.... ..++++.+++.+....+...+..
T Consensus 217 ~~~~~~~~~~~~~~v~~----g~Gi~~lp~~~~~~~~-~~-~~l~~l~~~~--~~~~l~~~~~~~~~~~~~~f~~~ 284 (303)
T 3isp_A 217 PTHFVPTTEGFTAAARA----GLGWGMFPEKLAASPL-AD-GSFVRVCDIH--LDVPLYWQCWKLDSPIIARITDT 284 (303)
T ss_dssp CBCCCCSHHHHHHHHHT----TSCBEEEEHHHHHHHH-HH-SSCEESSSCC--EEEEEEEEEESSCCHHHHHHHHH
T ss_pred ceEEECCHHHHHHHHHh----CCeEEeccHHHHhhhh-cC-CCeEEecCCC--CccceEEecCCCCChHHHHHHHH
Confidence 34556788888899988 5556666654443332 22 2455544433 56677777765555554444443
No 263
>3dmy_A Protein FDRA; predicted actyl-COA synthetase, nysgrc, PSI-II, STRU genomics, protein structure initiative; 2.07A {Escherichia coli}
Probab=49.11 E-value=1.9e+02 Score=31.68 Aligned_cols=145 Identities=12% Similarity=0.072 Sum_probs=86.1
Q ss_pred ChHHHHHHHHHHHhcCcEEEEc--CCChhHHHHHHHhhccCCccEEEcccCCCCCCCCCCCceEEecCCchHHHHHHHHH
Q 002309 81 SGFIGMVEALRFMETDIVAIIG--PQCSTVAHIVSYVSNELQVPLLSFGVTDPTLSSLQYPFFVRTTQSDSYQMTAVAEM 158 (938)
Q Consensus 81 ~~~~a~~~a~~li~~~V~aviG--p~~s~~~~~va~~~~~~~iP~Is~~~~~~~l~~~~~p~~~r~~ps~~~~~~ai~~~ 158 (938)
-+..+...+.++.+.|+.+||= ...-.....+..++..+++.+|.|.+. ...... +......
T Consensus 45 Pa~~v~~~v~e~~~~Gv~~viis~Gf~~~~~~~l~~~A~~~g~rliGPNcG--~~~~~~----~~~~f~~---------- 108 (480)
T 3dmy_A 45 AGEYAAELANQALDRNLNVMMFSDNVTLEDEIQLKTRAREKGLLVMGPDCG--TSMIAG----TPLAFAN---------- 108 (480)
T ss_dssp CHHHHHHHHHHHHHTTCEEEECCCCCCHHHHHHHHHHHHHTTCCEECSSCC--EEEETT----EEEESCC----------
T ss_pred CHHHHHHHHHHHHhcCCCEEEECCCCCHHHHHHHHHHHHHcCCEEEecCcc--ccccCC----ccccccC----------
Confidence 3455566667777777665541 122233455777888899999987662 111111 1111111
Q ss_pred HHhcCCcEEEEEEEcCccccchHHHHHHHHhhcceEEEEEeecCCCCC---CChhhHHHHHHHHhc-CCceEEEEEeChh
Q 002309 159 VSYYGWNAVSVIFVDNEYGRNGVSALNDKLAERRCRISYKSGIPPESG---VNTGYVMDLLVKVAL-MESRVIVLHVSPS 234 (938)
Q Consensus 159 l~~~~w~~vaii~~d~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~---~~~~d~~~~l~~lk~-~~~~viv~~~~~~ 234 (938)
.+.--+|++|.+... ....+.+.+.+.|+-+.....+-.... ..+.++.+.|.-+.+ .++++|+++..+.
T Consensus 109 --~~~~G~vaivSqSGa----l~~~i~~~~~~~g~G~S~~Vs~Gn~~l~~~i~dv~~~D~l~~l~~Dp~T~~I~ly~E~~ 182 (480)
T 3dmy_A 109 --VMPEGNIGVIGASGT----GIQELCSQIALAGEGITHAIGLGGRDLSREVGGISALTALEMLSADEKSEVLAFVSKPP 182 (480)
T ss_dssp --CCCEEEEEEEESCSH----HHHHHHHHHHHTTCCEEEEEECCTTTTSTTTTTHHHHHHHHHHHTCTTCCEEEEEESCC
T ss_pred --CCCCCCEEEEeccHH----HHHHHHHHHHHcCCCceEEEEcCCCccccccCCCCHHHHHHHHhcCCCCCEEEEEEecC
Confidence 122358999987665 345566777777776665544432200 035668888887765 6789999998642
Q ss_pred ---hHHHHHHHHHHcC
Q 002309 235 ---LGFQVFSVAKYLG 247 (938)
Q Consensus 235 ---~~~~~l~~a~~~g 247 (938)
.+..|++.|++.+
T Consensus 183 ~e~~~~~f~~~ar~~~ 198 (480)
T 3dmy_A 183 AEAVRLKIVNAMKATG 198 (480)
T ss_dssp CHHHHHHHHHHHHHHC
T ss_pred CcHHHHHHHHHHHhCC
Confidence 3477888887643
No 264
>2nr1_A NR1 M2, M2; receptor, signal, postsynaptic membrane; NMR {Homo sapiens} SCOP: j.35.1.1
Probab=47.55 E-value=6.7 Score=23.32 Aligned_cols=19 Identities=21% Similarity=0.468 Sum_probs=15.7
Q ss_pred cccchhhhhHHHHHHHhhh
Q 002309 620 KRQVITILWFSLSTLFFAH 638 (938)
Q Consensus 620 ~~~~~~~~~~~~~~l~~~~ 638 (938)
..++..++||+++.++..+
T Consensus 6 ~~~l~aa~wF~WGvllnsg 24 (27)
T 2nr1_A 6 ALTLSSAMWFSWGVLLNSG 24 (27)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred ceehhhhHHHhhHhheecc
Confidence 3457789999999999876
No 265
>2de3_A Dibenzothiophene desulfurization enzyme B; alpha-beta, hydrolase; HET: OBP; 1.60A {Rhodococcus SP} PDB: 2de4_A* 2de2_A
Probab=47.42 E-value=46 Score=35.25 Aligned_cols=121 Identities=21% Similarity=0.207 Sum_probs=68.0
Q ss_pred cCCCCChHHhhhCCCCeeEEe-------Cch-----------------------HHHHHHHhccccc--ccccccCCHH-
Q 002309 687 YSPINGIESLRKSDDPIGYQE-------GSF-----------------------AEYYLSQELNISK--SRLVALRTPE- 733 (938)
Q Consensus 687 ~~~i~s~~dL~~~~~~i~~~~-------~s~-----------------------~~~~~~~~~~~~~--~~~~~~~~~~- 733 (938)
..+|++++||. |++||+.. |+. ...++ +..++.. .+++.+....
T Consensus 108 ds~I~s~~DLk--Gk~Igv~~~~~~~~~gs~~~~~~~~~~~~~~~~~gs~~~~~~~~~L-~~~Gl~~~dv~~v~~~~~~~ 184 (365)
T 2de3_A 108 DSPITAAADLA--GRRIGVSASAIRILRGQLGDYLELDPWRQTLVALGSWEARALLHTL-EHGELGVDDVELVPISSPGV 184 (365)
T ss_dssp TCSCCSGGGGT--TCEEEECHHHHHHHHTCCTTGGGSCHHHHHHHHTTHHHHHHHHHHH-HHTTCCGGGSEEEECCCTTT
T ss_pred CCCCCCHHHhC--CCeEEeecccccccCCCcccccccchhhhhhhccchhhHHHHHHHH-HHcCCCHHHeEEEECCCccc
Confidence 35799999998 99999976 431 23444 3444432 3344444321
Q ss_pred ------------------------HHHHHHhcCCCCCceEEEEecchhHHHHHhcCCcEEEeCccc----cccceEeeec
Q 002309 734 ------------------------DYAKALKDGPGKGGVAAVVDERPYVELFLSSQCSFRIVGQEF----TKSGWGFAFP 785 (938)
Q Consensus 734 ------------------------~~~~~l~~~~~~g~~~a~i~~~~~~~~~~~~~~~l~~~~~~~----~~~~~~~~~~ 785 (938)
+...+|.+ |++||++...++......+ +..++...- ......++++
T Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~aL~~----G~vDA~~~~~p~~~~~~~~--g~~~l~~~~~~~~~~~~~~l~~~ 258 (365)
T 2de3_A 185 DVPAEQLEESATVKGADLFPDVARGQAAVLAS----GDVDALYSWLPWAGELQAT--GARPVVDLGLDERNAYASVWTVS 258 (365)
T ss_dssp CCCHHHHHHSSBSSHHHHSTTHHHHHHHHHHS----SSCSEEEEEHHHHHHHHHT--TEEESSCGGGSGGGCEEEEEEEE
T ss_pred cccccccccccccccccccccchhhHHHHHhC----CCcCEEEEcchhHHHHHhC--CCEEEEeCcccCCCCceEEEEEc
Confidence 25788988 8999999887776554332 344443321 1122355565
Q ss_pred C----CCc-chhh----HHHHHHhhhccC-cHHHHHHhhcC
Q 002309 786 R----DSP-LAVD----LSSAILELAENG-DLQRIHDKWLM 816 (938)
Q Consensus 786 k----~sp-l~~~----i~~~il~l~e~G-~~~~l~~~w~~ 816 (938)
+ ..| .... +.++...+.++. ...++..+|+.
T Consensus 259 ~~~~~~~p~~v~~~~~a~~~a~~~~~~~p~~~~~i~~~~~~ 299 (365)
T 2de3_A 259 SGLVRQRPGLVQRLVDAAVDAGLWARDHSDAVTSLHAANLG 299 (365)
T ss_dssp HHHHHHCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHhC
Confidence 3 244 4443 455555565552 34455555543
No 266
>8abp_A L-arabinose-binding protein; binding proteins; HET: GLA GAL; 1.49A {Escherichia coli} SCOP: c.93.1.1 PDB: 7abp_A* 6abp_A* 1abe_A* 1abf_A* 5abp_A* 1bap_A* 1apb_A* 9abp_A* 2wrz_A
Probab=47.28 E-value=51 Score=33.48 Aligned_cols=78 Identities=8% Similarity=0.050 Sum_probs=56.8
Q ss_pred cEEEEEEEc--CccccchHHHHHHHHhhcceEEEEEeecCCCCCCChhhHHHHHHHHhcCCceEEEEEeCh-hhHHHHHH
Q 002309 165 NAVSVIFVD--NEYGRNGVSALNDKLAERRCRISYKSGIPPESGVNTGYVMDLLVKVALMESRVIVLHVSP-SLGFQVFS 241 (938)
Q Consensus 165 ~~vaii~~d--~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~lk~~~~~viv~~~~~-~~~~~~l~ 241 (938)
.+|+++..+ +.|.....+.+.+++++.|+.+..... . +.......++.+...++|.||+.... ......++
T Consensus 3 ~~Ig~i~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~---~---~~~~~~~~i~~l~~~~vdgiii~~~~~~~~~~~~~ 76 (306)
T 8abp_A 3 LKLGFLVKQPEEPWFQTEWKFADKAGKDLGFEVIKIAV---P---DGEKTLNAIDSLAASGAKGFVICTPDPKLGSAIVA 76 (306)
T ss_dssp EEEEEEESCTTSHHHHHHHHHHHHHHHHHTEEEEEEEC---C---SHHHHHHHHHHHHHTTCCEEEEECSCGGGHHHHHH
T ss_pred eEEEEEeCCCCchHHHHHHHHHHHHHHHcCCEEEEeCC---C---CHHHHHHHHHHHHHcCCCEEEEeCCCchhhHHHHH
Confidence 367888754 567778889999999999998764432 1 25556677888888899999987654 34556788
Q ss_pred HHHHcCC
Q 002309 242 VAKYLGM 248 (938)
Q Consensus 242 ~a~~~g~ 248 (938)
.+.+.|+
T Consensus 77 ~~~~~~i 83 (306)
T 8abp_A 77 KARGYDM 83 (306)
T ss_dssp HHHHTTC
T ss_pred HHHHCCC
Confidence 8888775
No 267
>3jy6_A Transcriptional regulator, LACI family; NYSGXRC, PSI-II, protein S initiative, structural genomics; 1.97A {Lactobacillus brevis}
Probab=47.19 E-value=40 Score=33.75 Aligned_cols=78 Identities=12% Similarity=0.033 Sum_probs=57.2
Q ss_pred CcEEEEEEEc--CccccchHHHHHHHHhhcceEEEEEeecCCCCCCChhhHHHHHHHHhcCCceEEEEEeChhhHHHHHH
Q 002309 164 WNAVSVIFVD--NEYGRNGVSALNDKLAERRCRISYKSGIPPESGVNTGYVMDLLVKVALMESRVIVLHVSPSLGFQVFS 241 (938)
Q Consensus 164 w~~vaii~~d--~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~lk~~~~~viv~~~~~~~~~~~l~ 241 (938)
-+.|+++..+ +.|.......+.+++++.|+.+..... . .+...-...++.+...+.|.||+..... ...++
T Consensus 7 s~~Igvi~~~~~~~~~~~~~~gi~~~~~~~g~~~~~~~~-~----~~~~~~~~~~~~l~~~~vdgiIi~~~~~--~~~~~ 79 (276)
T 3jy6_A 7 SKLIAVIVANIDDYFSTELFKGISSILESRGYIGVLFDA-N----ADIEREKTLLRAIGSRGFDGLILQSFSN--PQTVQ 79 (276)
T ss_dssp CCEEEEEESCTTSHHHHHHHHHHHHHHHTTTCEEEEEEC-T----TCHHHHHHHHHHHHTTTCSEEEEESSCC--HHHHH
T ss_pred CcEEEEEeCCCCchHHHHHHHHHHHHHHHCCCEEEEEeC-C----CCHHHHHHHHHHHHhCCCCEEEEecCCc--HHHHH
Confidence 3578888854 557778889999999999998765321 1 2244556778888888999999987665 66777
Q ss_pred HHHHcCC
Q 002309 242 VAKYLGM 248 (938)
Q Consensus 242 ~a~~~g~ 248 (938)
.+.+.|+
T Consensus 80 ~l~~~~i 86 (276)
T 3jy6_A 80 EILHQQM 86 (276)
T ss_dssp HHHTTSS
T ss_pred HHHHCCC
Confidence 7777665
No 268
>3p6l_A Sugar phosphate isomerase/epimerase; TIM barrel, structural genomics, joint center for structural genomics, JCSG; HET: CIT; 1.85A {Parabacteroides distasonis}
Probab=47.15 E-value=76 Score=31.43 Aligned_cols=94 Identities=10% Similarity=-0.007 Sum_probs=67.7
Q ss_pred HHHHHHHHHhcCCcEEEEEEEc------------CccccchHHHHHHHHhhcceEEEEEeecCCCCCCChhhHHHHHHHH
Q 002309 152 MTAVAEMVSYYGWNAVSVIFVD------------NEYGRNGVSALNDKLAERRCRISYKSGIPPESGVNTGYVMDLLVKV 219 (938)
Q Consensus 152 ~~ai~~~l~~~~w~~vaii~~d------------~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~l 219 (938)
....++.++..|.+.|=+...+ ..........+++.+++.|+++........ ....++...+...
T Consensus 24 ~~~~l~~~~~~G~~~vEl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~i~~~~~~~~---~~~~~~~~~i~~A 100 (262)
T 3p6l_A 24 LTEALDKTQELGLKYIEIYPGHKLGGKWGDKVFDFNLDAQTQKEIKELAASKGIKIVGTGVYVA---EKSSDWEKMFKFA 100 (262)
T ss_dssp HHHHHHHHHHTTCCEEEECTTEECCGGGTTCEESTTCCHHHHHHHHHHHHHTTCEEEEEEEECC---SSTTHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCEEeecCCcccccccccccccccCCHHHHHHHHHHHHHcCCeEEEEeccCC---ccHHHHHHHHHHH
Confidence 4556777888899888775422 112234578999999999999876544332 2366788888888
Q ss_pred hcCCceEEEEEeChhhHHHHHHHHHHcCC
Q 002309 220 ALMESRVIVLHVSPSLGFQVFSVAKYLGM 248 (938)
Q Consensus 220 k~~~~~viv~~~~~~~~~~~l~~a~~~g~ 248 (938)
+..+++.|+++........+...|.+.|+
T Consensus 101 ~~lGa~~v~~~~~~~~~~~l~~~a~~~gv 129 (262)
T 3p6l_A 101 KAMDLEFITCEPALSDWDLVEKLSKQYNI 129 (262)
T ss_dssp HHTTCSEEEECCCGGGHHHHHHHHHHHTC
T ss_pred HHcCCCEEEecCCHHHHHHHHHHHHHhCC
Confidence 88999999998766666777777777775
No 269
>1tjy_A Sugar transport protein; protein-ligand complex, signaling protein; HET: PAV; 1.30A {Salmonella typhimurium} SCOP: c.93.1.1 PDB: 1tm2_A 3t95_A* 3ejw_A*
Probab=46.88 E-value=26 Score=36.22 Aligned_cols=80 Identities=11% Similarity=0.090 Sum_probs=54.5
Q ss_pred cEEEEEEE--cCccccchHHHHHHHHhhcceEEEEEeecCCCCCCChhhHHHHHHHHhcCCceEEEEEeChh-hHHHHHH
Q 002309 165 NAVSVIFV--DNEYGRNGVSALNDKLAERRCRISYKSGIPPESGVNTGYVMDLLVKVALMESRVIVLHVSPS-LGFQVFS 241 (938)
Q Consensus 165 ~~vaii~~--d~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~lk~~~~~viv~~~~~~-~~~~~l~ 241 (938)
++|+++.. ++.|.......+.+++++.|+++.... +.. .+.......++.+...+.+.|++..... .....++
T Consensus 4 ~~Igvi~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~--~~~--~d~~~q~~~i~~li~~~vdgiii~~~~~~~~~~~~~ 79 (316)
T 1tjy_A 4 ERIAFIPKLVGVGFFTSGGNGAQEAGKALGIDVTYDG--PTE--PSVSGQVQLVNNFVNQGYDAIIVSAVSPDGLCPALK 79 (316)
T ss_dssp CEEEEECSSSSSHHHHHHHHHHHHHHHHHTCEEEECC--CSS--CCHHHHHHHHHHHHHTTCSEEEECCSSSSTTHHHHH
T ss_pred CEEEEEeCCCCChHHHHHHHHHHHHHHHhCCEEEEEC--CCC--CCHHHHHHHHHHHHHcCCCEEEEeCCCHHHHHHHHH
Confidence 57888874 456777788889999999998875321 112 2344455667777778999988865433 3356788
Q ss_pred HHHHcCC
Q 002309 242 VAKYLGM 248 (938)
Q Consensus 242 ~a~~~g~ 248 (938)
.+++.|.
T Consensus 80 ~a~~~gi 86 (316)
T 1tjy_A 80 RAMQRGV 86 (316)
T ss_dssp HHHHTTC
T ss_pred HHHHCcC
Confidence 8887775
No 270
>2jfn_A Glutamate racemase; cell WALL, isomerase, cell shape, UDP- murnac-Ala, peptidoglycan biosynthesis, peptidoglycan synthesis; HET: GLU UMA; 1.9A {Escherichia coli}
Probab=46.06 E-value=72 Score=32.39 Aligned_cols=36 Identities=6% Similarity=0.106 Sum_probs=26.5
Q ss_pred HHHHh-cCcEEEEcCCChhHHHHHHHhhccCCccEEE
Q 002309 90 LRFME-TDIVAIIGPQCSTVAHIVSYVSNELQVPLLS 125 (938)
Q Consensus 90 ~~li~-~~V~aviGp~~s~~~~~va~~~~~~~iP~Is 125 (938)
..+++ .++.+|+-+.++..+..+..+-+..++|+|.
T Consensus 77 ~~ll~~~g~d~IviaCNTas~~~l~~lr~~~~iPVig 113 (285)
T 2jfn_A 77 TAVQERYPLALAVVACNTASTVSLPALREKFDFPVVG 113 (285)
T ss_dssp HHHHHHSCCSEEEECCHHHHHHHHHHHHHHCSSCEEC
T ss_pred HHHHHhCCCCEEEEECccccHHHHHHHHHhCCCCEEe
Confidence 33445 4899998877776655677777788999996
No 271
>4a8p_A Putrescine carbamoyltransferase; ornithine agmatine deiminase route; HET: PAO; 2.00A {Enterococcus faecalis} PDB: 4a8h_A* 3txx_A
Probab=45.58 E-value=2.8e+02 Score=28.87 Aligned_cols=132 Identities=12% Similarity=0.138 Sum_probs=77.0
Q ss_pred eEEEEEEeeCCCcchhHHHHHHHHHHHHHhcCCCCCCCCEEEEEEccCCCChHHHHHHHHHHHhcCcEEE--EcCCChhH
Q 002309 31 VVNVGALFTLDSTIGRVAKIAIEEAVKDVNSNSSILHGTKLNITMQSSNCSGFIGMVEALRFMETDIVAI--IGPQCSTV 108 (938)
Q Consensus 31 ~i~IG~i~~~~~~~g~~~~~a~~~Av~~iN~~~~il~g~~l~~~~~D~~~~~~~a~~~a~~li~~~V~av--iGp~~s~~ 108 (938)
.-.|+.+|...+. ..+.+|+.|+.++. |..+.+...++.-.-...+.-..+.++.=+.+| =.+. .
T Consensus 41 gK~la~lF~epST---RTR~SFE~A~~~LG-------g~vi~l~~~~ssl~kgEsl~DTarvLs~y~D~IviR~~~-~-- 107 (355)
T 4a8p_A 41 NKSLGMIFQQSST---RTRVSFETAMEQLG-------GHGEYLAPGQIQLGGHETIEDTSRVLSRLVDILMARVER-H-- 107 (355)
T ss_dssp TCEEEEEESSCCS---HHHHHHHHHHHHTT-------CEEEEECBTTBCBTTTBCHHHHHHHHTTTCSEEEEECSS-H--
T ss_pred CCEEEEEecCCCh---hhHhhHHHHHHHcC-------CeEEEeCcccccCCCCcCHHHHHHHHHHhCCEEEEecCc-H--
Confidence 3467888877764 67899999999872 444444333443222222333334444423333 3432 2
Q ss_pred HHHHHHhhccCCccEEEcccCCCCCCCCCCCceEEecCCchHHHHHHHHHH---Hhc--C----CcEEEEEEEcCccccc
Q 002309 109 AHIVSYVSNELQVPLLSFGVTDPTLSSLQYPFFVRTTQSDSYQMTAVAEMV---SYY--G----WNAVSVIFVDNEYGRN 179 (938)
Q Consensus 109 ~~~va~~~~~~~iP~Is~~~~~~~l~~~~~p~~~r~~ps~~~~~~ai~~~l---~~~--~----w~~vaii~~d~~~g~~ 179 (938)
..+..++...+||+|... + +...| .+++++++ +++ | ..+|++|. |. ..
T Consensus 108 -~~~~~lA~~~~vPVINag--~----~~~HP------------tQaLaDl~TI~E~~~~G~~l~glkva~vG--D~--~r 164 (355)
T 4a8p_A 108 -HSIVDLANCATIPVINGM--S----DYNHP------------TQELGDLCTMVEHLPEGKKLEDCKVVFVG--DA--TQ 164 (355)
T ss_dssp -HHHHHHHHHCSSCEEECC--C----SSCCH------------HHHHHHHHHHHHTCCTTCCGGGCEEEEES--CC--CH
T ss_pred -HHHHHHHHhCCCCEEeCC--C----CCCCc------------HHHHHHHHHHHHHhhcCCCCCCCEEEEEC--CC--ch
Confidence 334455566789999742 2 11222 57777763 466 5 25777664 32 45
Q ss_pred hHHHHHHHHhhcceEEEEE
Q 002309 180 GVSALNDKLAERRCRISYK 198 (938)
Q Consensus 180 ~~~~l~~~l~~~g~~v~~~ 198 (938)
....+..++...|.++...
T Consensus 165 va~Sl~~~~~~~G~~v~~~ 183 (355)
T 4a8p_A 165 VCFSLGLITTKMGMNFVHF 183 (355)
T ss_dssp HHHHHHHHHHHTTCEEEEE
T ss_pred hHHHHHHHHHHcCCEEEEE
Confidence 6778888888899887654
No 272
>2xxp_A CPS2A; replication, peptidoglycan, LCP, LYTR; HET: DSL PEG; 1.69A {Streptococcus pneumoniae} PDB: 3tep_A* 3tfl_A* 2xxq_A* 3tel_A* 4de8_A*
Probab=45.52 E-value=14 Score=39.82 Aligned_cols=67 Identities=16% Similarity=0.111 Sum_probs=50.6
Q ss_pred CCCCChHHhhhCCCCeeEEeCchHHHHHHH------hcccccccccccCCHHHHHHHHhcCCCCCceEEEEecchhHHHH
Q 002309 688 SPINGIESLRKSDDPIGYQEGSFAEYYLSQ------ELNISKSRLVALRTPEDYAKALKDGPGKGGVAAVVDERPYVELF 761 (938)
Q Consensus 688 ~~i~s~~dL~~~~~~i~~~~~s~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~a~i~~~~~~~~~ 761 (938)
..|++++||. + ||++.+...+.+... +.+. ..+++.|++..+++.+|.+ |+++|++.+..+...+
T Consensus 26 s~i~sl~DLk--g--vgv~~~~~~~~~~~~~~~i~~~~g~-~~~~~~y~~~~~a~~aL~n----G~vDAiv~~~~~~~~l 96 (398)
T 2xxp_A 26 SEIENVTQLT--S--VTAPTGTDNENIQKLLADIKSSQNT-DLTVNQSSSYLAAYKSLIA----GETKAIVLNSVFENII 96 (398)
T ss_dssp CSCCSGGGCS--E--EEECTTTSHHHHHHHHHHHHHHSCC-CCEEEECSSHHHHHHHHHT----TSCSCEEEEHHHHHHH
T ss_pred CCcCCHHHhc--C--eeeECCCCHHHHHHHHHHHHHhhCC-cceEEecCCHHHHHHHHHc----CCCCEEEEchHHHHHH
Confidence 7899999998 5 999988766655421 1122 1356789999999999999 9999999988776655
Q ss_pred Hh
Q 002309 762 LS 763 (938)
Q Consensus 762 ~~ 763 (938)
..
T Consensus 97 e~ 98 (398)
T 2xxp_A 97 EL 98 (398)
T ss_dssp HH
T ss_pred Hh
Confidence 43
No 273
>1b73_A Glutamate racemase; isomerase; 2.30A {Aquifex pyrophilus} SCOP: c.78.2.1 c.78.2.1 PDB: 1b74_A*
Probab=45.23 E-value=52 Score=32.77 Aligned_cols=120 Identities=15% Similarity=0.105 Sum_probs=65.9
Q ss_pred HHHHHHHHhcCcEEEEcCCChhHHHHHHHhhccCCccEEEcccCCCCCCCCCCCceEEecCCchHHHHHHH-HHHHhcCC
Q 002309 86 MVEALRFMETDIVAIIGPQCSTVAHIVSYVSNELQVPLLSFGVTDPTLSSLQYPFFVRTTQSDSYQMTAVA-EMVSYYGW 164 (938)
Q Consensus 86 ~~~a~~li~~~V~aviGp~~s~~~~~va~~~~~~~iP~Is~~~~~~~l~~~~~p~~~r~~ps~~~~~~ai~-~~l~~~~w 164 (938)
.+.+..|.+.|+.+|+-+.++..+..+..+-+..++|+|.. .++.+ ..++..+-
T Consensus 52 ~~~~~~L~~~g~d~iviaCnTa~~~~~~~lr~~~~iPvigi-------------------------~e~~~~~A~~~~~~ 106 (254)
T 1b73_A 52 LECAGFLKDKGVDIIVVACNTASAYALERLKKEINVPVFGV-------------------------IEPGVKEALKKSRN 106 (254)
T ss_dssp HHHHHHHHTTTCSEEEECCHHHHTTSHHHHHHHSSSCEEES-------------------------HHHHHHHHHHHCSS
T ss_pred HHHHHHHHHCCCCEEEEeCchhhHHHHHHHHHhCCCCEEee-------------------------eHHHHHHHHHccCC
Confidence 33444455559999988766665444556666678999963 11112 22334567
Q ss_pred cEEEEEEEcCccccchHHHHHHHHhhcceEEEEEe--ecCCCCCC---C----hhhHHHHHHHHhcCCceEEEEEeChh
Q 002309 165 NAVSVIFVDNEYGRNGVSALNDKLAERRCRISYKS--GIPPESGV---N----TGYVMDLLVKVALMESRVIVLHVSPS 234 (938)
Q Consensus 165 ~~vaii~~d~~~g~~~~~~l~~~l~~~g~~v~~~~--~~~~~~~~---~----~~d~~~~l~~lk~~~~~viv~~~~~~ 234 (938)
++|+++......-.. ..++.+++.|+++.... .+...... + ...+...++++.+. +|+||+.|..-
T Consensus 107 ~rigVlaT~~T~~~~---~y~~~l~~~g~~v~~~~~~~~v~~ie~g~~~~~~~~~~l~~~~~~l~~~-~d~IILGCT~~ 181 (254)
T 1b73_A 107 KKIGVIGTPATVKSG---AYQRKLEEGGADVFAKACPLFAPLAEEGLLEGEITRKVVEHYLKEFKGK-IDTLILGCTHY 181 (254)
T ss_dssp CEEEEEECHHHHHHC---HHHHHHHTTSCEEEEEECCCCTTTSCGGGGSGGGHHHHHHHHSTTTTTT-CSEEEECCCCT
T ss_pred CEEEEEEChHHhhhH---HHHHHHHcCCCEEEecCCHHHHHHHHCCCCCCHHHHHHHHHHHHHHHhc-CCEEEECccCh
Confidence 899999865442222 23455557788764211 11111000 1 12344444555555 99999977653
No 274
>3k6v_A Solute-binding protein MA_0280; MODA, molybdate, periplasmic BIN protein, ABC transporter, transport protein, ligand, metal- protein; HET: CIT; 1.69A {Methanosarcina acetivorans} PDB: 3k6u_A* 3k6w_A 3k6x_A
Probab=45.19 E-value=2.4e+02 Score=29.44 Aligned_cols=69 Identities=13% Similarity=0.095 Sum_probs=40.7
Q ss_pred HHHHHHHHhC-CCCccEEEEecCCCCCCCChhHHHHhhh-cc-eecEEeccEeeecCce---eeeeeccceecccEEEEE
Q 002309 496 DVFTAAVNLL-PYAVPYQFVAFGDGHKNPSYTQLVDSIT-TG-VFDAVVGDITIVTNRT---KIVDFSQPYAASGLVVVV 569 (938)
Q Consensus 496 dll~~la~~l-~f~~~~~~~~~~~~~~~~~~~~~i~~l~-~g-~~D~~~~~~~~t~~r~---~~v~fs~p~~~~~~~~lv 569 (938)
++.+.+.++. |.++++.+ +.-..++.++. +| .+|+.++.-.-..++. ...+...+|....+++++
T Consensus 59 ~l~~~Fe~~~pgv~V~~~~---------ggSg~l~~qi~e~G~~aDVf~sad~~~~~~l~~~g~~~~~~~~a~n~lVliv 129 (354)
T 3k6v_A 59 ELEAEFEAQHPGVDVQREA---------AGSAQSVRKITELGKKADVLASADYALIPSLMVPEYADWYAAFARNQMILAY 129 (354)
T ss_dssp HHHHHHHHHSTTCEEEEEE---------ECHHHHHHHHHTSCCCCSEEEESSTTHHHHHTTTTTCSCEEEEEECCEEEEE
T ss_pred HHHHHHHHHCCCcEEEEEe---------CCHHHHHHHHHhcCCCccEEEECCHHHHHHHHhCCCCCCceEeECCeEEEEE
Confidence 6777777777 76655443 22456777774 35 6898765321111111 123344677888889988
Q ss_pred eccC
Q 002309 570 PFRK 573 (938)
Q Consensus 570 ~~~~ 573 (938)
++..
T Consensus 130 ~~~~ 133 (354)
T 3k6v_A 130 TNES 133 (354)
T ss_dssp CTTS
T ss_pred ECCC
Confidence 8765
No 275
>3d02_A Putative LACI-type transcriptional regulator; periplasmic sugar-binding protein, structura genomics; HET: MSE GOL; 1.30A {Klebsiella pneumoniae subsp}
Probab=44.94 E-value=44 Score=33.95 Aligned_cols=80 Identities=13% Similarity=0.054 Sum_probs=53.6
Q ss_pred cEEEEEEE--cCccccchHHHHHHHHhhcceEEEEEeecCCCCCCChhhHHHHHHHHhcCCceEEEEEeChh-hHHHHHH
Q 002309 165 NAVSVIFV--DNEYGRNGVSALNDKLAERRCRISYKSGIPPESGVNTGYVMDLLVKVALMESRVIVLHVSPS-LGFQVFS 241 (938)
Q Consensus 165 ~~vaii~~--d~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~lk~~~~~viv~~~~~~-~~~~~l~ 241 (938)
.+|+++.. ++.|.......+.+++++.|+++.... +.. .+.......++++...+.+.||+..... .....++
T Consensus 5 ~~Ig~i~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~--~~~--~~~~~~~~~~~~l~~~~vdgiii~~~~~~~~~~~~~ 80 (303)
T 3d02_A 5 KTVVNISKVDGMPWFNRMGEGVVQAGKEFNLNASQVG--PSS--TDAPQQVKIIEDLIARKVDAITIVPNDANVLEPVFK 80 (303)
T ss_dssp EEEEEECSCSSCHHHHHHHHHHHHHHHHTTEEEEEEC--CSS--SCHHHHHHHHHHHHHTTCSEEEECCSCHHHHHHHHH
T ss_pred eEEEEEeccCCChHHHHHHHHHHHHHHHcCCEEEEEC--CCC--CCHHHHHHHHHHHHHcCCCEEEEecCChHHHHHHHH
Confidence 46777764 456777888899999999998875321 111 2244455667777778899988875533 3345677
Q ss_pred HHHHcCC
Q 002309 242 VAKYLGM 248 (938)
Q Consensus 242 ~a~~~g~ 248 (938)
.+.+.|+
T Consensus 81 ~~~~~~i 87 (303)
T 3d02_A 81 KARDAGI 87 (303)
T ss_dssp HHHHTTC
T ss_pred HHHHCCC
Confidence 7777664
No 276
>1ccw_A Protein (glutamate mutase); coenzyme B12, radical reaction, TIM-barrel rossman-fold, isomerase; HET: CNC TAR; 1.60A {Clostridium cochlearium} SCOP: c.23.6.1 PDB: 1cb7_A* 1b1a_A 1i9c_A* 1be1_A 1fmf_A 1id8_A*
Probab=44.88 E-value=1.2e+02 Score=26.75 Aligned_cols=84 Identities=6% Similarity=0.053 Sum_probs=54.2
Q ss_pred EEEEEEEcCccccchHHHHHHHHhhcceEEEEEeecCCCCCCChhhHHHHHHHHhcCCceEEEEEeChhh----HHHHHH
Q 002309 166 AVSVIFVDNEYGRNGVSALNDKLAERRCRISYKSGIPPESGVNTGYVMDLLVKVALMESRVIVLHVSPSL----GFQVFS 241 (938)
Q Consensus 166 ~vaii~~d~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~lk~~~~~viv~~~~~~~----~~~~l~ 241 (938)
+|.+-....+.-.-+...+...++..|++|.+-....+ ....++.+++.++++|.+.+.... ...+++
T Consensus 5 ~vvla~~~~d~HdiG~~~v~~~l~~~G~~Vi~lG~~~p--------~e~~v~~a~~~~~d~v~lS~~~~~~~~~~~~~i~ 76 (137)
T 1ccw_A 5 TIVLGVIGSDCHAVGNKILDHAFTNAGFNVVNIGVLSP--------QELFIKAAIETKADAILVSSLYGQGEIDCKGLRQ 76 (137)
T ss_dssp EEEEEEETTCCCCHHHHHHHHHHHHTTCEEEEEEEEEC--------HHHHHHHHHHHTCSEEEEEECSSTHHHHHTTHHH
T ss_pred EEEEEeCCCchhHHHHHHHHHHHHHCCCEEEECCCCCC--------HHHHHHHHHhcCCCEEEEEecCcCcHHHHHHHHH
Confidence 45555555554555677788899999999886543221 234566666678999999876432 445677
Q ss_pred HHHHcCCCCCCeEEEEe
Q 002309 242 VAKYLGMMGNGYVWIAT 258 (938)
Q Consensus 242 ~a~~~g~~~~~~~wi~~ 258 (938)
+.++.|.. .-.+|++.
T Consensus 77 ~l~~~g~~-~i~v~vGG 92 (137)
T 1ccw_A 77 KCDEAGLE-GILLYVGG 92 (137)
T ss_dssp HHHHTTCT-TCEEEEEE
T ss_pred HHHhcCCC-CCEEEEEC
Confidence 77777753 34456654
No 277
>2l69_A Rossmann 2X3 fold protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Artificial gene}
Probab=44.55 E-value=41 Score=26.66 Aligned_cols=100 Identities=18% Similarity=0.182 Sum_probs=53.8
Q ss_pred CCceEEecCCchHHHHHHHHHHHhcCCcEEEEEEEcCccccchHHHHHHHHhhcceEEEEEeecCCCCCCChhhHHHHHH
Q 002309 138 YPFFVRTTQSDSYQMTAVAEMVSYYGWNAVSVIFVDNEYGRNGVSALNDKLAERRCRISYKSGIPPESGVNTGYVMDLLV 217 (938)
Q Consensus 138 ~p~~~r~~ps~~~~~~ai~~~l~~~~w~~vaii~~d~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~d~~~~l~ 217 (938)
..+-.|+.-+....-..+-++++.|+-+-|.++.+|.+|.+..+. |...+ |..+... -+..+ ...+...-+
T Consensus 25 ngfkvrtvrspqelkdsieelvkkynativvvvvddkewaekair-fvksl---gaqvlii-iydqd----qnrleefsr 95 (134)
T 2l69_A 25 NGFKVRTVRSPQELKDSIEELVKKYNATIVVVVVDDKEWAEKAIR-FVKSL---GAQVLII-IYDQD----QNRLEEFSR 95 (134)
T ss_dssp TTCEEEEECSHHHHHHHHHHHTTCCCCEEEEEECSSHHHHHHHHH-HHHHH---CCCCEEE-EECSC----HHHHHHHHH
T ss_pred cCceEEEecCHHHHHHHHHHHHHHhCCeEEEEEEccHHHHHHHHH-HHHhc---CCeEEEE-EEeCc----hhHHHHHHH
Confidence 456678888887778888888888888777777766666544333 22223 3332211 22222 444444445
Q ss_pred HHhcCCceEEEEEeChhhHHHHH-HHHHHcC
Q 002309 218 KVALMESRVIVLHVSPSLGFQVF-SVAKYLG 247 (938)
Q Consensus 218 ~lk~~~~~viv~~~~~~~~~~~l-~~a~~~g 247 (938)
++++.+-.+-- ..++++...-+ +-.++.|
T Consensus 96 evrrrgfevrt-vtspddfkkslerlirevg 125 (134)
T 2l69_A 96 EVRRRGFEVRT-VTSPDDFKKSLERLIREVG 125 (134)
T ss_dssp HHHHTTCCEEE-ESSHHHHHHHHHHHHHHHC
T ss_pred HHHhcCceEEE-ecChHHHHHHHHHHHHHhc
Confidence 55555555433 34555544433 2334444
No 278
>2jfq_A Glutamate racemase; cell WALL, isomerase, cell shape, peptidoglycan synthesis, peptidoglycan biosynthesis; HET: DGL; 2.15A {Staphylococcus aureus}
Probab=44.40 E-value=82 Score=31.98 Aligned_cols=38 Identities=21% Similarity=0.340 Sum_probs=27.2
Q ss_pred HHHHHHhcCcEEEEcCCChhHHHHHHHhhccCCccEEE
Q 002309 88 EALRFMETDIVAIIGPQCSTVAHIVSYVSNELQVPLLS 125 (938)
Q Consensus 88 ~a~~li~~~V~aviGp~~s~~~~~va~~~~~~~iP~Is 125 (938)
.+..|.+.++.+|+-+.++..+.++..+-+..++|+|.
T Consensus 76 ~~~~L~~~g~d~IVIaCNTas~~~l~~lr~~~~iPVig 113 (286)
T 2jfq_A 76 IARKLMEFDIKMLVIACNTATAVALEYLQKTLSISVIG 113 (286)
T ss_dssp HHHHHTTSCCSEEEECCHHHHHHHHHHHHHHCSSEEEE
T ss_pred HHHHHHHCCCCEEEEeCCchhHHHHHHHHHhCCCCEEe
Confidence 34444455899998877776655666777778999997
No 279
>3rot_A ABC sugar transporter, periplasmic sugar binding; nysgrc, PSI-biology, structural genomics; 1.91A {Legionella pneumophila subsp}
Probab=43.78 E-value=34 Score=34.79 Aligned_cols=81 Identities=7% Similarity=0.016 Sum_probs=56.5
Q ss_pred cEEEEEEEc--CccccchHHHHHHHHhhcceEEEEEeecCCCCCCChhhHHHHHHHHhcCCceEEEEEeCh-hhHHHHHH
Q 002309 165 NAVSVIFVD--NEYGRNGVSALNDKLAERRCRISYKSGIPPESGVNTGYVMDLLVKVALMESRVIVLHVSP-SLGFQVFS 241 (938)
Q Consensus 165 ~~vaii~~d--~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~lk~~~~~viv~~~~~-~~~~~~l~ 241 (938)
.+|+++..+ +.|.......+.+++++.|+.+.....-... +.......++.+...+.|.||+.... ......++
T Consensus 4 ~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~---~~~~~~~~i~~l~~~~vdgiii~~~~~~~~~~~~~ 80 (297)
T 3rot_A 4 DKYYLITHGSQDPYWTSLFQGAKKAAEELKVDLQILAPPGAN---DVPKQVQFIESALATYPSGIATTIPSDTAFSKSLQ 80 (297)
T ss_dssp CEEEEECSCCCSHHHHHHHHHHHHHHHHHTCEEEEECCSSSC---CHHHHHHHHHHHHHTCCSEEEECCCCSSTTHHHHH
T ss_pred EEEEEEecCCCCchHHHHHHHHHHHHHHhCcEEEEECCCCcC---CHHHHHHHHHHHHHcCCCEEEEeCCCHHHHHHHHH
Confidence 367787754 6677888899999999999988754311101 24555677788888899999886543 34466778
Q ss_pred HHHHcCC
Q 002309 242 VAKYLGM 248 (938)
Q Consensus 242 ~a~~~g~ 248 (938)
++.+.|+
T Consensus 81 ~~~~~gi 87 (297)
T 3rot_A 81 RANKLNI 87 (297)
T ss_dssp HHHHHTC
T ss_pred HHHHCCC
Confidence 8887775
No 280
>3uug_A Multiple sugar-binding periplasmic receptor CHVE; periplasmic binding protein, sugar-binding protein, sugar binding protein; HET: BDP; 1.75A {Agrobacterium tumefaciens} PDB: 3urm_A*
Probab=43.54 E-value=52 Score=33.88 Aligned_cols=79 Identities=10% Similarity=0.078 Sum_probs=57.1
Q ss_pred cEEEEEEEc--CccccchHHHHHHHHhhcceEEEEEeecCCCCCCChhhHHHHHHHHhcCCceEEEEEeChh-hHHHHHH
Q 002309 165 NAVSVIFVD--NEYGRNGVSALNDKLAERRCRISYKSGIPPESGVNTGYVMDLLVKVALMESRVIVLHVSPS-LGFQVFS 241 (938)
Q Consensus 165 ~~vaii~~d--~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~lk~~~~~viv~~~~~~-~~~~~l~ 241 (938)
++|+++..+ +.|.......+.+++++.|+.+.... .. .+...-...++.+...++|.||+..... .....++
T Consensus 4 ~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~--~~---~~~~~~~~~i~~~~~~~vdgiIi~~~~~~~~~~~~~ 78 (330)
T 3uug_A 4 GSVGIAMPTKSSARWIDDGNNIVKQLQEAGYKTDLQY--AD---DDIPNQLSQIENMVTKGVKVLVIASIDGTTLSDVLK 78 (330)
T ss_dssp CEEEEEECCSSSTHHHHHHHHHHHHHHHTTCEEEEEE--CT---TCHHHHHHHHHHHHHHTCSEEEECCSSGGGGHHHHH
T ss_pred cEEEEEeCCCcchHHHHHHHHHHHHHHHcCCEEEEee--CC---CCHHHHHHHHHHHHHcCCCEEEEEcCCchhHHHHHH
Confidence 578888864 56777888999999999999876543 11 2344455677777778899999876543 4566788
Q ss_pred HHHHcCC
Q 002309 242 VAKYLGM 248 (938)
Q Consensus 242 ~a~~~g~ 248 (938)
++.+.|+
T Consensus 79 ~~~~~gi 85 (330)
T 3uug_A 79 QAGEQGI 85 (330)
T ss_dssp HHHHTTC
T ss_pred HHHHCCC
Confidence 8887775
No 281
>2fn9_A Ribose ABC transporter, periplasmic ribose-bindin; RBP, ribose binding protein, periplasmic binding protein, thermophilic proteins; 1.40A {Thermotoga maritima} PDB: 2fn8_A*
Probab=43.25 E-value=57 Score=32.81 Aligned_cols=79 Identities=8% Similarity=0.048 Sum_probs=53.7
Q ss_pred cEEEEEEE--cCccccchHHHHHHHHhhcceEEEEEeecCCCCCCChhhHHHHHHHHhcCCceEEEEEeChh-hHHHHHH
Q 002309 165 NAVSVIFV--DNEYGRNGVSALNDKLAERRCRISYKSGIPPESGVNTGYVMDLLVKVALMESRVIVLHVSPS-LGFQVFS 241 (938)
Q Consensus 165 ~~vaii~~--d~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~lk~~~~~viv~~~~~~-~~~~~l~ 241 (938)
++|+++.. ++.|.......+.+++++.|+.+..... . .+.......++.+...+.|.||+..... .....++
T Consensus 3 ~~Ig~i~~~~~~~~~~~~~~gi~~~~~~~g~~~~~~~~---~--~~~~~~~~~~~~l~~~~vdgiI~~~~~~~~~~~~~~ 77 (290)
T 2fn9_A 3 GKMAIVISTLNNPWFVVLAETAKQRAEQLGYEATIFDS---Q--NDTAKESAHFDAIIAAGYDAIIFNPTDADGSIANVK 77 (290)
T ss_dssp CEEEEEESCSSSHHHHHHHHHHHHHHHHTTCEEEEEEC---T--TCHHHHHHHHHHHHHTTCSEEEECCSCTTTTHHHHH
T ss_pred eEEEEEeCCCCChHHHHHHHHHHHHHHHcCCEEEEeCC---C--CCHHHHHHHHHHHHHcCCCEEEEecCChHHHHHHHH
Confidence 46888875 3667778889999999999998764321 1 2244455667777778899998865433 3335667
Q ss_pred HHHHcCC
Q 002309 242 VAKYLGM 248 (938)
Q Consensus 242 ~a~~~g~ 248 (938)
.+.+.|.
T Consensus 78 ~~~~~~i 84 (290)
T 2fn9_A 78 RAKEAGI 84 (290)
T ss_dssp HHHHTTC
T ss_pred HHHHCCC
Confidence 7776664
No 282
>3rfq_A Pterin-4-alpha-carbinolamine dehydratase MOAB2; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: B3P; 2.25A {Mycobacterium marinum} PDB: 3tcr_A
Probab=43.22 E-value=63 Score=30.35 Aligned_cols=65 Identities=12% Similarity=0.109 Sum_probs=46.7
Q ss_pred CcEEEEEEEcCcc--c--cchHHHHHHHHhhcceEEEEEeecCCCCCCChhhHHHHHHHHhcCCceEEEEEeC
Q 002309 164 WNAVSVIFVDNEY--G--RNGVSALNDKLAERRCRISYKSGIPPESGVNTGYVMDLLVKVALMESRVIVLHVS 232 (938)
Q Consensus 164 w~~vaii~~d~~~--g--~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~lk~~~~~viv~~~~ 232 (938)
--+|+||...|+- | ......+.+.+++.|.++.....++.+ .+.+...+++....++|+|++.+.
T Consensus 30 ~~rvaIistGdEl~~G~~Dsn~~~L~~~L~~~G~~v~~~~iv~Dd----~~~I~~al~~a~~~~~DlVIttGG 98 (185)
T 3rfq_A 30 VGRALVVVVDDRTAHGDEDHSGPLVTELLTEAGFVVDGVVAVEAD----EVDIRNALNTAVIGGVDLVVSVGG 98 (185)
T ss_dssp CEEEEEEEECHHHHTTCCCSHHHHHHHHHHHTTEEEEEEEEECSC----HHHHHHHHHHHHHTTCSEEEEESC
T ss_pred CCEEEEEEECcccCCCCcCcHHHHHHHHHHHCCCEEEEEEEeCCC----HHHHHHHHHHHHhCCCCEEEECCC
Confidence 3578888764432 2 334577888999999998877767644 777888888765467999998754
No 283
>3gd5_A Otcase, ornithine carbamoyltransferase; structural genomics, NYSGXRC, target 9454P, operon, amino-acid biosynthesis, ARGI biosynthesis; 2.10A {Gloeobacter violaceus}
Probab=43.13 E-value=2.4e+02 Score=29.02 Aligned_cols=131 Identities=12% Similarity=0.110 Sum_probs=71.9
Q ss_pred EEEEEEeeCCCcchhHHHHHHHHHHHHHhcCCCCCCCCEEEEEEccCCCChHHHHHHHHHHHhcCcEEEE--cCCChhHH
Q 002309 32 VNVGALFTLDSTIGRVAKIAIEEAVKDVNSNSSILHGTKLNITMQSSNCSGFIGMVEALRFMETDIVAII--GPQCSTVA 109 (938)
Q Consensus 32 i~IG~i~~~~~~~g~~~~~a~~~Av~~iN~~~~il~g~~l~~~~~D~~~~~~~a~~~a~~li~~~V~avi--Gp~~s~~~ 109 (938)
-.|+.+|...+. ..+.+|+.|+.++. |..+.+-..++.-.-...+.-..+.++.=+.+|+ .+. .
T Consensus 49 k~la~lF~e~ST---RTR~SFE~A~~~LG-------g~~i~l~~~~ss~~kgEsl~DTarvLs~~~D~iviR~~~-~--- 114 (323)
T 3gd5_A 49 KVLGLVFLKAST---RTRVSFTVAMYQLG-------GQVIDLSPSNTQVGRGEPVRDTARVLGRYVDGLAIRTFA-Q--- 114 (323)
T ss_dssp CEEEEEESSCCH---HHHHHHHHHHHHTT-------CEEEEC----------CCHHHHHHHHTTTCSEEEEECSS-H---
T ss_pred CEEEEEecCCCc---chHhhHHHHHHHcC-------CeEEEeCcccccCCCCCCHHHHHHHHHHhCCEEEEecCC-h---
Confidence 478888877763 67899999999883 3333333333322112222333334444344443 433 2
Q ss_pred HHHHHhhccCCccEEEcccCCCCCCCCCCCceEEecCCchHHHHHHHHHH---Hh---cCCcEEEEEEEcCccccchHHH
Q 002309 110 HIVSYVSNELQVPLLSFGVTDPTLSSLQYPFFVRTTQSDSYQMTAVAEMV---SY---YGWNAVSVIFVDNEYGRNGVSA 183 (938)
Q Consensus 110 ~~va~~~~~~~iP~Is~~~~~~~l~~~~~p~~~r~~ps~~~~~~ai~~~l---~~---~~w~~vaii~~d~~~g~~~~~~ 183 (938)
..+..+++..+||+|.... + ...| .+++++++ ++ +...+|++|.+ . ......
T Consensus 115 ~~~~~lA~~~~vPVINag~-~-----~~HP------------tQaLaDl~Ti~e~~g~l~glkva~vGD--~--~rva~S 172 (323)
T 3gd5_A 115 TELEEYAHYAGIPVINALT-D-----HEHP------------CQVVADLLTIRENFGRLAGLKLAYVGD--G--NNVAHS 172 (323)
T ss_dssp HHHHHHHHHHCSCEEEEEC-S-----SCCH------------HHHHHHHHHHHHHHSCCTTCEEEEESC--C--CHHHHH
T ss_pred hHHHHHHHhCCCCEEeCCC-C-----CCCc------------HHHHHHHHHHHHHhCCCCCCEEEEECC--C--CcHHHH
Confidence 3334455666899997422 1 1122 57777764 23 34578887752 2 456677
Q ss_pred HHHHHhhcceEEEEE
Q 002309 184 LNDKLAERRCRISYK 198 (938)
Q Consensus 184 l~~~l~~~g~~v~~~ 198 (938)
+..++...|.++...
T Consensus 173 l~~~~~~~G~~v~~~ 187 (323)
T 3gd5_A 173 LLLGCAKVGMSIAVA 187 (323)
T ss_dssp HHHHHHHHTCEEEEE
T ss_pred HHHHHHHcCCEEEEE
Confidence 777888889887654
No 284
>3o74_A Fructose transport system repressor FRUR; dual transcriptional regulator, DNA, transcription; 2.00A {Pseudomonas putida} PDB: 3o75_A*
Probab=43.07 E-value=25 Score=35.20 Aligned_cols=79 Identities=10% Similarity=0.034 Sum_probs=55.5
Q ss_pred cEEEEEEEc--CccccchHHHHHHHHhhcceEEEEEeecCCCCCCChhhHHHHHHHHhcCCceEEEEEeChhhHHHHHHH
Q 002309 165 NAVSVIFVD--NEYGRNGVSALNDKLAERRCRISYKSGIPPESGVNTGYVMDLLVKVALMESRVIVLHVSPSLGFQVFSV 242 (938)
Q Consensus 165 ~~vaii~~d--~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~lk~~~~~viv~~~~~~~~~~~l~~ 242 (938)
+.|+++..+ +.|.......+.+++++.|+.+..... . .+.......++.+...+.|.||+..........++.
T Consensus 3 ~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~---~--~~~~~~~~~~~~l~~~~vdgiIi~~~~~~~~~~~~~ 77 (272)
T 3o74_A 3 RTLGFILPDLENPSYARIAKQLEQGARARGYQLLIASS---D--DQPDSERQLQQLFRARRCDALFVASCLPPEDDSYRE 77 (272)
T ss_dssp CEEEEEESCTTCHHHHHHHHHHHHHHHHTTCEEEEEEC---T--TCHHHHHHHHHHHHHTTCSEEEECCCCCSSCCHHHH
T ss_pred eEEEEEeCCCcChhHHHHHHHHHHHHHHCCCEEEEEeC---C--CCHHHHHHHHHHHHHcCCCEEEEecCccccHHHHHH
Confidence 468888854 557778889999999999998765321 1 224555677788888899999987654333456677
Q ss_pred HHHcCC
Q 002309 243 AKYLGM 248 (938)
Q Consensus 243 a~~~g~ 248 (938)
+.+.|+
T Consensus 78 ~~~~~i 83 (272)
T 3o74_A 78 LQDKGL 83 (272)
T ss_dssp HHHTTC
T ss_pred HHHcCC
Confidence 777665
No 285
>3l6u_A ABC-type sugar transport system periplasmic compo; structural genomics, nysgrc, target 11006S, PSI-2, protein S initiative; 1.90A {Exiguobacterium sibiricum}
Probab=42.98 E-value=43 Score=33.83 Aligned_cols=81 Identities=11% Similarity=0.122 Sum_probs=56.7
Q ss_pred CCcEEEEEEEc--CccccchHHHHHHHHhhcceEEEEEeecCCCCCCChhhHHHHHHHHhcCCceEEEEEeCh-hhHHHH
Q 002309 163 GWNAVSVIFVD--NEYGRNGVSALNDKLAERRCRISYKSGIPPESGVNTGYVMDLLVKVALMESRVIVLHVSP-SLGFQV 239 (938)
Q Consensus 163 ~w~~vaii~~d--~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~lk~~~~~viv~~~~~-~~~~~~ 239 (938)
.-++|+++..+ +.|.......+.+++++.|+.+..... . .+.......++.+...+.|.||+.... ......
T Consensus 7 ~~~~Ig~i~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~---~--~~~~~~~~~~~~l~~~~vdgiI~~~~~~~~~~~~ 81 (293)
T 3l6u_A 7 KRNIVGFTIVNDKHEFAQRLINAFKAEAKANKYEALVATS---Q--NSRISEREQILEFVHLKVDAIFITTLDDVYIGSA 81 (293)
T ss_dssp --CEEEEEESCSCSHHHHHHHHHHHHHHHHTTCEEEEEEC---S--SCHHHHHHHHHHHHHTTCSEEEEECSCTTTTHHH
T ss_pred CCcEEEEEEecCCcHHHHHHHHHHHHHHHHcCCEEEEECC---C--CCHHHHHHHHHHHHHcCCCEEEEecCChHHHHHH
Confidence 34678888854 557777889999999999998765422 1 224555677788888899999987554 334467
Q ss_pred HHHHHHcCC
Q 002309 240 FSVAKYLGM 248 (938)
Q Consensus 240 l~~a~~~g~ 248 (938)
++.+.+.|+
T Consensus 82 ~~~~~~~~i 90 (293)
T 3l6u_A 82 IEEAKKAGI 90 (293)
T ss_dssp HHHHHHTTC
T ss_pred HHHHHHcCC
Confidence 788877775
No 286
>3dbi_A Sugar-binding transcriptional regulator, LACI FAM; structural genomics, sugar-binding transcriptional regulator structure initiative, PSI-2; HET: MSE; 2.45A {Escherichia coli K12}
Probab=42.36 E-value=77 Score=32.79 Aligned_cols=82 Identities=5% Similarity=-0.056 Sum_probs=56.2
Q ss_pred cCCcEEEEEEEc----CccccchHHHHHHHHhhcceEEEEEeecCCCCCCChhhHHHHHHHHhcCCceEEEEEeChhhHH
Q 002309 162 YGWNAVSVIFVD----NEYGRNGVSALNDKLAERRCRISYKSGIPPESGVNTGYVMDLLVKVALMESRVIVLHVSPSLGF 237 (938)
Q Consensus 162 ~~w~~vaii~~d----~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~lk~~~~~viv~~~~~~~~~ 237 (938)
-.-+.|+++..+ +.|.......+.+++++.|..+..... . .+...-...++.+...+.|.||+........
T Consensus 59 ~~~~~Igvi~~~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~-~----~~~~~~~~~~~~l~~~~vdgiIi~~~~~~~~ 133 (338)
T 3dbi_A 59 KSTQTLGLVVTNTLYHGIYFSELLFHAARMAEEKGRQLLLADG-K----HSAEEERQAIQYLLDLRCDAIMIYPRFLSVD 133 (338)
T ss_dssp -CCSEEEEEECTTTTSTTHHHHHHHHHHHHHHHTTCEEEEEEC-T----TSHHHHHHHHHHHHHTTCSEEEECCSSSCHH
T ss_pred CCCCEEEEEecCCcccChhHHHHHHHHHHHHHHCCCEEEEEeC-C----CChHHHHHHHHHHHhCCCCEEEEeCCCCChH
Confidence 345689998865 456667788999999999998765431 1 1244455577788888999999976554445
Q ss_pred HHHHHHHHcCC
Q 002309 238 QVFSVAKYLGM 248 (938)
Q Consensus 238 ~~l~~a~~~g~ 248 (938)
.+.+.+.+.+.
T Consensus 134 ~~~~~~~~~~i 144 (338)
T 3dbi_A 134 EIDDIIDAHSQ 144 (338)
T ss_dssp HHHHHHHHCSS
T ss_pred HHHHHHHcCCC
Confidence 56666666554
No 287
>1y5e_A Molybdenum cofactor biosynthesis protein B; structural genomics, protein structure initiative, PSI, MCSG, midwest center for structural genomics; 1.90A {Bacillus cereus} SCOP: c.57.1.1
Probab=42.19 E-value=94 Score=28.58 Aligned_cols=68 Identities=6% Similarity=0.033 Sum_probs=48.8
Q ss_pred cCCcEEEEEEEcCcccc---chHHHHHHHHhhcceEEEEEeecCCCCCCChhhHHHHHHHHhc-CCceEEEEEeCh
Q 002309 162 YGWNAVSVIFVDNEYGR---NGVSALNDKLAERRCRISYKSGIPPESGVNTGYVMDLLVKVAL-MESRVIVLHVSP 233 (938)
Q Consensus 162 ~~w~~vaii~~d~~~g~---~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~lk~-~~~~viv~~~~~ 233 (938)
|.--+++||...|+-|+ .....+.+.+++.|+++.....++-+ .+.+...+++..+ .++|+||+.+..
T Consensus 11 ~~~~rv~Ii~tGdElg~i~Dsn~~~l~~~L~~~G~~v~~~~iv~Dd----~~~i~~~l~~~~~~~~~DlVittGG~ 82 (169)
T 1y5e_A 11 PKEVRCKIVTISDTRTEETDKSGQLLHELLKEAGHKVTSYEIVKDD----KESIQQAVLAGYHKEDVDVVLTNGGT 82 (169)
T ss_dssp -CCCEEEEEEECSSCCTTTCHHHHHHHHHHHHHTCEEEEEEEECSS----HHHHHHHHHHHHTCTTCSEEEEECCC
T ss_pred ccCCEEEEEEEcCccCeeccChHHHHHHHHHHCCCeEeEEEEeCCC----HHHHHHHHHHHHhcCCCCEEEEcCCC
Confidence 34458899887666543 33467888899999998877666643 7788888887765 378999987553
No 288
>2rin_A Putative glycine betaine-binding ABC transporter protein; type II binding protein, aromatic BOX, acetylcholine, protein binding; HET: ACH; 1.80A {Rhizobium meliloti} PDB: 2rej_A 2rf1_A 2reg_A* 3hcq_A
Probab=42.11 E-value=60 Score=33.18 Aligned_cols=39 Identities=18% Similarity=0.206 Sum_probs=26.6
Q ss_pred HHHHHHHHhCCCCccEEEEecCCCCCCCChhHHHHhhhcceecEEecc
Q 002309 496 DVFTAAVNLLPYAVPYQFVAFGDGHKNPSYTQLVDSITTGVFDAVVGD 543 (938)
Q Consensus 496 dll~~la~~l~f~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~D~~~~~ 543 (938)
.++..+.+.+|+++ +..+ ++-..+...|.+|++|+.+..
T Consensus 24 ~i~~~~Le~~G~~V--e~~~-------~~~~~~~~Al~~G~iD~~~~~ 62 (298)
T 2rin_A 24 ATATTILEALGYET--DVKV-------LSVPVTYTSLKNKDIDVFLGN 62 (298)
T ss_dssp HHHHHHHHHHTCEE--EEEC-------CCHHHHHHHHHHTSCCEEEEE
T ss_pred HHHHHHHHHcCCce--EEEE-------CCcHHHHHHHHcCCcEEEhhh
Confidence 34455556679764 4443 335677889999999998753
No 289
>2pjk_A 178AA long hypothetical molybdenum cofactor biosynthesis protein B; 3D-structure, structural genomics, NPPSFA; HET: PEG; 1.90A {Sulfolobus tokodaii} PDB: 3iwt_A*
Probab=42.03 E-value=79 Score=29.45 Aligned_cols=67 Identities=16% Similarity=0.130 Sum_probs=47.6
Q ss_pred cCCcEEEEEEEcCc-c------c---cchHHHHHHHHhhcceEEEEEeecCCCCCCChhhHHHHHHHHhcC-CceEEEEE
Q 002309 162 YGWNAVSVIFVDNE-Y------G---RNGVSALNDKLAERRCRISYKSGIPPESGVNTGYVMDLLVKVALM-ESRVIVLH 230 (938)
Q Consensus 162 ~~w~~vaii~~d~~-~------g---~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~lk~~-~~~viv~~ 230 (938)
+.--+|+||...|+ + | ......+.+.+++.|.++.....++.+ .+.+...+++..+. ++|+||+.
T Consensus 13 ~~~~rv~IittGde~~~~~~~~G~i~Dsn~~~L~~~l~~~G~~v~~~~iv~Dd----~~~I~~al~~a~~~~~~DlVitt 88 (178)
T 2pjk_A 13 PKSLNFYVITISTSRYEKLLKKEPIVDESGDIIKQLLIENGHKIIGYSLVPDD----KIKILKAFTDALSIDEVDVIIST 88 (178)
T ss_dssp CCCCEEEEEEECHHHHHHHHTTCCCCCHHHHHHHHHHHHTTCEEEEEEEECSC----HHHHHHHHHHHHTCTTCCEEEEE
T ss_pred CCCCEEEEEEeCcccccccccCCeEeehHHHHHHHHHHHCCCEEEEEEEeCCC----HHHHHHHHHHHHhcCCCCEEEEC
Confidence 44458888886542 1 2 344567888999999998876666643 77888888877654 58999987
Q ss_pred eC
Q 002309 231 VS 232 (938)
Q Consensus 231 ~~ 232 (938)
+.
T Consensus 89 GG 90 (178)
T 2pjk_A 89 GG 90 (178)
T ss_dssp SC
T ss_pred CC
Confidence 54
No 290
>1k2d_P MBP peptide, myelin basic protein peptide with 8 residue linke; MHC class II, I-AU, H-2U, autoimmune disease; HET: NDG NAG; 2.20A {Mus musculus}
Probab=42.01 E-value=10 Score=21.52 Aligned_cols=21 Identities=29% Similarity=0.294 Sum_probs=16.6
Q ss_pred CccccccccccccccccCCCC
Q 002309 917 DEDFGRSSKRRATDLATGSNI 937 (938)
Q Consensus 917 ~~~~~~~~~~~~~~~~~~~~~ 937 (938)
-.+--|||+|--..+|+||..
T Consensus 5 gasq~rpsqrhg~gsgsgs~~ 25 (26)
T 1k2d_P 5 GASQYRPSQRHGTGSGSGSXX 25 (26)
T ss_pred cccccCccccccCCCCcCccC
Confidence 345569999999999999864
No 291
>3i42_A Response regulator receiver domain protein (CHEY- like); structural genomics, PSI-2, protein structure initiative; 2.15A {Methylobacillus flagellatus KT} SCOP: c.23.1.0
Probab=41.78 E-value=1.1e+02 Score=25.61 Aligned_cols=69 Identities=10% Similarity=0.096 Sum_probs=44.0
Q ss_pred hHHHHHHHHhhcceEEEEEeecCCCCCCChhhHHHHHHHHhcCCceEEEEEeC--hhhHHHHHHHHHHcCCCCCCeEEEE
Q 002309 180 GVSALNDKLAERRCRISYKSGIPPESGVNTGYVMDLLVKVALMESRVIVLHVS--PSLGFQVFSVAKYLGMMGNGYVWIA 257 (938)
Q Consensus 180 ~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~lk~~~~~viv~~~~--~~~~~~~l~~a~~~g~~~~~~~wi~ 257 (938)
....+.+.+++.|..+... .+....+..+++..+++|++... ..+...++++.++......-.+.++
T Consensus 15 ~~~~l~~~L~~~g~~v~~~-----------~~~~~a~~~l~~~~~dlii~D~~l~~~~g~~~~~~l~~~~~~~~~~ii~~ 83 (127)
T 3i42_A 15 AAETFKELLEMLGFQADYV-----------MSGTDALHAMSTRGYDAVFIDLNLPDTSGLALVKQLRALPMEKTSKFVAV 83 (127)
T ss_dssp HHHHHHHHHHHTTEEEEEE-----------SSHHHHHHHHHHSCCSEEEEESBCSSSBHHHHHHHHHHSCCSSCCEEEEE
T ss_pred HHHHHHHHHHHcCCCEEEE-----------CCHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHhhhccCCCCEEEE
Confidence 5567778888888765421 12345566667788999999754 4567888888887632222334444
Q ss_pred eC
Q 002309 258 TD 259 (938)
Q Consensus 258 ~~ 259 (938)
++
T Consensus 84 s~ 85 (127)
T 3i42_A 84 SG 85 (127)
T ss_dssp EC
T ss_pred EC
Confidence 43
No 292
>3brq_A HTH-type transcriptional regulator ASCG; transcriptional repressor structure escherichia coli, struct genomics, PSI-2; HET: FRU; 2.00A {Escherichia coli}
Probab=41.48 E-value=82 Score=31.62 Aligned_cols=80 Identities=4% Similarity=-0.096 Sum_probs=52.1
Q ss_pred CCcEEEEEEEc----CccccchHHHHHHHHhhcceEEEEEeecCCCCCCChhhHHHHHHHHhcCCceEEEEEeChhhHHH
Q 002309 163 GWNAVSVIFVD----NEYGRNGVSALNDKLAERRCRISYKSGIPPESGVNTGYVMDLLVKVALMESRVIVLHVSPSLGFQ 238 (938)
Q Consensus 163 ~w~~vaii~~d----~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~lk~~~~~viv~~~~~~~~~~ 238 (938)
.-.+|+++..+ +.|.......+.+++++.|..+.... .. .+.......++.+...+.+.||+....... .
T Consensus 18 ~~~~Ig~i~~~~~~~~~~~~~~~~gi~~~~~~~g~~~~~~~---~~--~~~~~~~~~~~~l~~~~vdgii~~~~~~~~-~ 91 (296)
T 3brq_A 18 STQTLGLVVTNTLYHGIYFSELLFHAARMAEEKGRQLLLAD---GK--HSAEEERQAIQYLLDLRCDAIMIYPRFLSV-D 91 (296)
T ss_dssp -CCEEEEEECGGGCC--CHHHHHHHHHHHHHHTTCEEEEEC---CT--TSHHHHHHHHHHHHHTTCSEEEEECSSSCH-H
T ss_pred CCceEEEEeCCcccCCchHHHHHHHHHHHHHHCCCEEEEEe---CC--CCHHHHHHHHHHHHhcCCCEEEEecCCCCh-H
Confidence 44688988854 45777788899999999999876431 11 224445567777777889999887553322 4
Q ss_pred HHHHHHH-cCC
Q 002309 239 VFSVAKY-LGM 248 (938)
Q Consensus 239 ~l~~a~~-~g~ 248 (938)
.++.+.+ .|.
T Consensus 92 ~~~~l~~~~~i 102 (296)
T 3brq_A 92 EIDDIIDAHSQ 102 (296)
T ss_dssp HHHHHHHTCSS
T ss_pred HHHHHHhcCCC
Confidence 4566666 554
No 293
>2yxb_A Coenzyme B12-dependent mutase; alpha/beta, structural genomics, NPPSFA, national project on structural and functional analyses; 1.80A {Aeropyrum pernix}
Probab=41.39 E-value=1.6e+02 Score=26.70 Aligned_cols=85 Identities=13% Similarity=0.060 Sum_probs=56.1
Q ss_pred cEEEEEEEcCccccchHHHHHHHHhhcceEEEEEeecCCCCCCChhhHHHHHHHHhcCCceEEEEEeCh----hhHHHHH
Q 002309 165 NAVSVIFVDNEYGRNGVSALNDKLAERRCRISYKSGIPPESGVNTGYVMDLLVKVALMESRVIVLHVSP----SLGFQVF 240 (938)
Q Consensus 165 ~~vaii~~d~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~lk~~~~~viv~~~~~----~~~~~~l 240 (938)
.+|.+.....+.-.-+...+...|+..|++|.+-... ......+..+++.++++|.+.+.. .....++
T Consensus 19 ~~vlla~~~gd~HdiG~~~va~~l~~~G~eVi~lG~~--------~p~e~lv~aa~~~~~diV~lS~~~~~~~~~~~~~i 90 (161)
T 2yxb_A 19 YKVLVAKMGLDGHDRGAKVVARALRDAGFEVVYTGLR--------QTPEQVAMAAVQEDVDVIGVSILNGAHLHLMKRLM 90 (161)
T ss_dssp CEEEEEEESSSSCCHHHHHHHHHHHHTTCEEECCCSB--------CCHHHHHHHHHHTTCSEEEEEESSSCHHHHHHHHH
T ss_pred CEEEEEeCCCCccHHHHHHHHHHHHHCCCEEEECCCC--------CCHHHHHHHHHhcCCCEEEEEeechhhHHHHHHHH
Confidence 4555555555555566788888999999998743221 123456677777899999998763 3566677
Q ss_pred HHHHHcCCCCCCeEEEEe
Q 002309 241 SVAKYLGMMGNGYVWIAT 258 (938)
Q Consensus 241 ~~a~~~g~~~~~~~wi~~ 258 (938)
+++++.|.. .-.+|++.
T Consensus 91 ~~L~~~g~~-~i~v~vGG 107 (161)
T 2yxb_A 91 AKLRELGAD-DIPVVLGG 107 (161)
T ss_dssp HHHHHTTCT-TSCEEEEE
T ss_pred HHHHhcCCC-CCEEEEeC
Confidence 788887752 23456654
No 294
>3l6g_A Betaine ABC transporter permease and substrate BI protein; glycine betaine binding, substrate binding domain, venus FLY cell membrane; HET: B3P; 1.90A {Lactococcus lactis} PDB: 3l6h_A
Probab=41.36 E-value=83 Score=31.28 Aligned_cols=43 Identities=21% Similarity=0.219 Sum_probs=31.0
Q ss_pred eeHHHHHHHHHhCCCCccEEEEecCCCCCCCChhHHHHhhhcceecEEeccE
Q 002309 493 FCIDVFTAAVNLLPYAVPYQFVAFGDGHKNPSYTQLVDSITTGVFDAVVGDI 544 (938)
Q Consensus 493 ~~~dll~~la~~l~f~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~D~~~~~~ 544 (938)
+...+.+.+.+.+|++++ ..+ ++-.-+...|.+|++|+.+...
T Consensus 16 i~~~i~~~~Le~~G~~Ve--~~~-------~~~~~~~~al~~G~iD~~~e~w 58 (256)
T 3l6g_A 16 ASINVLTQAMKEHGFDVK--TTA-------LDNAVAWQTVANGQADGMVSAW 58 (256)
T ss_dssp HHHHHHHHHHHHTTEEEE--EEE-------CCHHHHHHHHHTTSSSEEEEEE
T ss_pred HHHHHHHHHHHHCCCceE--EEE-------CChHHHHHHHHCCCCeEEEccc
Confidence 345677787788897644 444 3356788999999999987643
No 295
>3ojc_A Putative aspartate/glutamate racemase; structural genomics, csgid, center for structural genomics O infectious diseases, alpha beta; 1.75A {Yersinia pestis}
Probab=41.32 E-value=17 Score=35.72 Aligned_cols=79 Identities=13% Similarity=0.167 Sum_probs=45.4
Q ss_pred HHHHHhcCcEEEEcCCChhHHHHHHHhhccCCccEEEcccCCCCCCCCCCCceEEecCCchHHHHHHHHHHHhcCCcEEE
Q 002309 89 ALRFMETDIVAIIGPQCSTVAHIVSYVSNELQVPLLSFGVTDPTLSSLQYPFFVRTTQSDSYQMTAVAEMVSYYGWNAVS 168 (938)
Q Consensus 89 a~~li~~~V~aviGp~~s~~~~~va~~~~~~~iP~Is~~~~~~~l~~~~~p~~~r~~ps~~~~~~ai~~~l~~~~w~~va 168 (938)
+..|.+.|+.+|+-+.++... ....+-+..++|+|.. .++.++-+...+-++|+
T Consensus 69 ~~~L~~~g~~~iviaCNTa~~-~~~~l~~~~~iPvi~i-------------------------~~~~~~~a~~~~~~rVg 122 (231)
T 3ojc_A 69 AISLKHAGAEVIVVCTNTMHK-VADDIEAACGLPLLHI-------------------------ADATAVQIKQQGIDKIG 122 (231)
T ss_dssp HHHHHHHTCCEEEECSSGGGG-GHHHHHHHHCSCBCCH-------------------------HHHHHHHHHHTTCCEEE
T ss_pred HHHHHhcCCCEEEEeCCchHH-HHHHHHHhCCCCEecc-------------------------HHHHHHHHHHcCCCEEE
Confidence 334444599988877776443 2244555568888852 24444444445678999
Q ss_pred EEEEcCccccchHHHHHHHHhhc-ceEEE
Q 002309 169 VIFVDNEYGRNGVSALNDKLAER-RCRIS 196 (938)
Q Consensus 169 ii~~d~~~g~~~~~~l~~~l~~~-g~~v~ 196 (938)
++......-.+. +++.+++. |+++.
T Consensus 123 vLaT~~T~~s~~---y~~~l~~~~g~~v~ 148 (231)
T 3ojc_A 123 LLGTRYTMEQGF---YRGRLTEKHGIEVI 148 (231)
T ss_dssp EESCHHHHHSTT---THHHHHHTTCCEEE
T ss_pred EEcCHHHhhchH---HHHHHHhcCCCEEE
Confidence 997543221122 24555555 87764
No 296
>3tb6_A Arabinose metabolism transcriptional repressor; transcription regulation, arabinose binding, DNA binding Pro; HET: ARB; 2.21A {Bacillus subtilis}
Probab=41.21 E-value=76 Score=31.92 Aligned_cols=79 Identities=10% Similarity=0.031 Sum_probs=57.2
Q ss_pred cEEEEEEEc--CccccchHHHHHHHHhhcceEEEEEeecCCCCCCChhhHHHHHHHHhcCCceEEEEEeChh----hHHH
Q 002309 165 NAVSVIFVD--NEYGRNGVSALNDKLAERRCRISYKSGIPPESGVNTGYVMDLLVKVALMESRVIVLHVSPS----LGFQ 238 (938)
Q Consensus 165 ~~vaii~~d--~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~lk~~~~~viv~~~~~~----~~~~ 238 (938)
+.|+++..+ +.|.......+.+++++.|..+.....- .+...-...++.+...+.|.||+..... ....
T Consensus 16 ~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~-----~~~~~~~~~~~~l~~~~vdgiIi~~~~~~~~~~~~~ 90 (298)
T 3tb6_A 16 KTIGVLTTYISDYIFPSIIRGIESYLSEQGYSMLLTSTN-----NNPDNERRGLENLLSQHIDGLIVEPTKSALQTPNIG 90 (298)
T ss_dssp CEEEEEESCSSSTTHHHHHHHHHHHHHHTTCEEEEEECT-----TCHHHHHHHHHHHHHTCCSEEEECCSSTTSCCTTHH
T ss_pred ceEEEEeCCCCchHHHHHHHHHHHHHHHCCCEEEEEeCC-----CChHHHHHHHHHHHHCCCCEEEEecccccccCCcHH
Confidence 789999864 5577788899999999999987654221 1245556777888888999999875432 3446
Q ss_pred HHHHHHHcCC
Q 002309 239 VFSVAKYLGM 248 (938)
Q Consensus 239 ~l~~a~~~g~ 248 (938)
.++.+.+.|+
T Consensus 91 ~~~~~~~~~i 100 (298)
T 3tb6_A 91 YYLNLEKNGI 100 (298)
T ss_dssp HHHHHHHTTC
T ss_pred HHHHHHhcCC
Confidence 7777777675
No 297
>3k4h_A Putative transcriptional regulator; structural genomics, protein structure INI NEW YORK structural genomix research consortium; HET: MAL; 2.80A {Bacillus cytotoxicus nvh 391-98}
Probab=41.09 E-value=46 Score=33.57 Aligned_cols=80 Identities=8% Similarity=0.003 Sum_probs=54.5
Q ss_pred CCcEEEEEEEc-------CccccchHHHHHHHHhhcceEEEEEeecCCCCCCChhhHHHHHHHHhcCCceEEEEEeChhh
Q 002309 163 GWNAVSVIFVD-------NEYGRNGVSALNDKLAERRCRISYKSGIPPESGVNTGYVMDLLVKVALMESRVIVLHVSPSL 235 (938)
Q Consensus 163 ~w~~vaii~~d-------~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~lk~~~~~viv~~~~~~~ 235 (938)
+-+.|+++..+ +.|.......+.+++++.|..+... ... .........++.+...+.|.||+......
T Consensus 7 ~~~~Igvi~~~~~~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~---~~~--~~~~~~~~~~~~~~~~~vdgiIi~~~~~~ 81 (292)
T 3k4h_A 7 TTKTLGLVMPSSASKAFQNPFFPEVIRGISSFAHVEGYALYMS---TGE--TEEEIFNGVVKMVQGRQIGGIILLYSREN 81 (292)
T ss_dssp CCCEEEEECSSCHHHHTTSTHHHHHHHHHHHHHHHTTCEEEEC---CCC--SHHHHHHHHHHHHHTTCCCEEEESCCBTT
T ss_pred CCCEEEEEecCCccccccCHHHHHHHHHHHHHHHHcCCEEEEE---eCC--CCHHHHHHHHHHHHcCCCCEEEEeCCCCC
Confidence 44678888765 5567778889999999999887642 222 22344456677778889999998654432
Q ss_pred HHHHHHHHHHcCC
Q 002309 236 GFQVFSVAKYLGM 248 (938)
Q Consensus 236 ~~~~l~~a~~~g~ 248 (938)
...++.+.+.|+
T Consensus 82 -~~~~~~l~~~~i 93 (292)
T 3k4h_A 82 -DRIIQYLHEQNF 93 (292)
T ss_dssp -CHHHHHHHHTTC
T ss_pred -hHHHHHHHHCCC
Confidence 256677777665
No 298
>2vvt_A Glutamate racemase; isomerase, peptidoglycan synthesis, cell WALL biogenesis/degradation, cell shape, benzyl purine, MURI inhibitor; HET: I24 DGL; 1.65A {Enterococcus faecalis} PDB: 2jfp_A* 2jfo_A* 2jfu_A 2jfv_A* 2jfw_A*
Probab=41.08 E-value=87 Score=31.84 Aligned_cols=39 Identities=13% Similarity=0.161 Sum_probs=28.5
Q ss_pred HHHHHHHhcCcEEEEcCCChhHHHHHHHhhccCCccEEE
Q 002309 87 VEALRFMETDIVAIIGPQCSTVAHIVSYVSNELQVPLLS 125 (938)
Q Consensus 87 ~~a~~li~~~V~aviGp~~s~~~~~va~~~~~~~iP~Is 125 (938)
+.+..|.+.++.+|+-+.++..+.++..+-+..++|+|.
T Consensus 77 ~~~~~L~~~g~d~IVIACNTas~~~l~~lr~~~~iPVig 115 (290)
T 2vvt_A 77 EMADFLLKKRIKMLVIACNTATAVALEEIKAALPIPVVG 115 (290)
T ss_dssp HHHHHHHTTTCSEEEECCHHHHHHHHHHHHHHCSSCEEE
T ss_pred HHHHHHHHCCCCEEEEeCcchhHHHHHHHHHhCCCCEEc
Confidence 344445555999998877777656677777788999996
No 299
>3okf_A 3-dehydroquinate synthase; structural genomics, center for structural genomics of infec diseases, csgid, NAD, lyase; HET: NAD; 2.50A {Vibrio cholerae o1 biovar eltor}
Probab=41.08 E-value=73 Score=33.99 Aligned_cols=112 Identities=10% Similarity=-0.009 Sum_probs=69.1
Q ss_pred CceEEecCCchHHHHHHHHHHHhcCCcEEEEEEEcCccccchHHHHHHHHhhcceEEEEEeecCCC-CCCChhhHHHHHH
Q 002309 139 PFFVRTTQSDSYQMTAVAEMVSYYGWNAVSVIFVDNEYGRNGVSALNDKLAERRCRISYKSGIPPE-SGVNTGYVMDLLV 217 (938)
Q Consensus 139 p~~~r~~ps~~~~~~ai~~~l~~~~w~~vaii~~d~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~-~~~~~~d~~~~l~ 217 (938)
||-+...+....+. . +++.++.+++.+|++...+.. ..+.+.+.+++.|+.+... .++.. ...+.+.+...++
T Consensus 41 ~y~I~~G~g~l~~l---~-~l~~~~~~rvlIVtd~~v~~~-~~~~v~~~L~~~g~~~~~~-~~~~gE~~kt~~~v~~~~~ 114 (390)
T 3okf_A 41 SYPISIGAGLFANP---A-LLSLSAKQKVVIVTNHTVAPL-YAPAIISLLDHIGCQHALL-ELPDGEQYKTLETFNTVMS 114 (390)
T ss_dssp CEEEEEETTGGGCG---G-GGCCCTTCEEEEEEETTTHHH-HHHHHHHHHHHHTCEEEEE-EECSSGGGCBHHHHHHHHH
T ss_pred CCCEEEeCCHHHhH---H-HHHhcCCCEEEEEECCcHHHH-HHHHHHHHHHHcCCeEEEE-EECCCcCCchHHHHHHHHH
Confidence 45455555443332 2 445567799999997665543 6788889999989876432 22221 0123567778888
Q ss_pred HHhcCCc---eEEEEEeCh--hhHHHHHHHHHHcCCCCCCeEEEEeC
Q 002309 218 KVALMES---RVIVLHVSP--SLGFQVFSVAKYLGMMGNGYVWIATD 259 (938)
Q Consensus 218 ~lk~~~~---~viv~~~~~--~~~~~~l~~a~~~g~~~~~~~wi~~~ 259 (938)
.+++.+. ++||..+.+ .+...++......| ..++-|-|.
T Consensus 115 ~l~~~~~~R~d~IIAvGGGsv~D~ak~~Aa~~~rg---ip~I~IPTT 158 (390)
T 3okf_A 115 FLLEHNYSRDVVVIALGGGVIGDLVGFAAACYQRG---VDFIQIPTT 158 (390)
T ss_dssp HHHHTTCCTTCEEEEEESHHHHHHHHHHHHHBTTC---CEEEEEECS
T ss_pred HHHhcCCCcCcEEEEECCcHHhhHHHHHHHHhcCC---CCEEEeCCC
Confidence 8887776 688777665 35666665555444 356666654
No 300
>2is8_A Molybdopterin biosynthesis enzyme, MOAB; globular alpha/beta fold, structu genomics, NPPSFA; 1.64A {Thermus thermophilus} PDB: 3mch_A
Probab=40.95 E-value=77 Score=29.02 Aligned_cols=64 Identities=17% Similarity=0.163 Sum_probs=45.5
Q ss_pred EEEEEEEcCc--cc---cchHHHHHHHHhhcceEEEEEeecCCCCCCChhhHHHHHHHHhcC-CceEEEEEeCh
Q 002309 166 AVSVIFVDNE--YG---RNGVSALNDKLAERRCRISYKSGIPPESGVNTGYVMDLLVKVALM-ESRVIVLHVSP 233 (938)
Q Consensus 166 ~vaii~~d~~--~g---~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~lk~~-~~~viv~~~~~ 233 (938)
+++||...|+ .| ......+.+.+++.|+++.....++.+ .+.+...+++..+. ++|+||+.+..
T Consensus 3 ~v~Ii~tGdEl~~G~i~D~n~~~l~~~l~~~G~~v~~~~iv~Dd----~~~i~~~l~~~~~~~~~DlVittGG~ 72 (164)
T 2is8_A 3 RVGILTVSDKGFRGERQDTTHLAIREVLAGGPFEVAAYELVPDE----PPMIKKVLRLWADREGLDLILTNGGT 72 (164)
T ss_dssp EEEEEEECHHHHHTSSCCCHHHHHHHHHTTSSEEEEEEEEECSC----HHHHHHHHHHHHHTSCCSEEEEESCC
T ss_pred EEEEEEEcCcccCCCcccchHHHHHHHHHHCCCeEeEEEEcCCC----HHHHHHHHHHHHhcCCCCEEEEcCCC
Confidence 5777775444 12 234567888999999998877666644 77888888887654 78999987553
No 301
>3ksm_A ABC-type sugar transport system, periplasmic COMP; periplasmic component, PSI- 11023L, structural genomics, protein structure initiative; HET: BDR; 1.90A {Hahella chejuensis}
Probab=40.57 E-value=43 Score=33.34 Aligned_cols=80 Identities=9% Similarity=0.019 Sum_probs=55.0
Q ss_pred EEEEEEE--cCccccchHHHHHHHHhhcceEEEEEeecCCCCCCChhhHHHHHHHHhcCC-ceEEEEEeC-hhhHHHHHH
Q 002309 166 AVSVIFV--DNEYGRNGVSALNDKLAERRCRISYKSGIPPESGVNTGYVMDLLVKVALME-SRVIVLHVS-PSLGFQVFS 241 (938)
Q Consensus 166 ~vaii~~--d~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~lk~~~-~~viv~~~~-~~~~~~~l~ 241 (938)
+|+++.. ++.|.......+.+++++.|+.+.....-. . .+.......++.+...+ .|.||+... .......++
T Consensus 2 ~Ig~i~~~~~~~~~~~~~~gi~~~~~~~g~~~~~~~~~~-~--~~~~~~~~~i~~l~~~~~vdgii~~~~~~~~~~~~~~ 78 (276)
T 3ksm_A 2 KLLLVLKGDSNAYWRQVYLGAQKAADEAGVTLLHRSTKD-D--GDIAGQIQILSYHLSQAPPDALILAPNSAEDLTPSVA 78 (276)
T ss_dssp EEEEECSCSSSTHHHHHHHHHHHHHHHHTCEEEECCCSS-T--TCHHHHHHHHHHHHHHSCCSEEEECCSSTTTTHHHHH
T ss_pred eEEEEeCCCCChHHHHHHHHHHHHHHHcCCEEEEECCCC-C--CCHHHHHHHHHHHHHhCCCCEEEEeCCCHHHHHHHHH
Confidence 5777774 456777888999999999999876432111 1 22444556677777778 999998764 345566788
Q ss_pred HHHHcCC
Q 002309 242 VAKYLGM 248 (938)
Q Consensus 242 ~a~~~g~ 248 (938)
.+.+.|+
T Consensus 79 ~~~~~~i 85 (276)
T 3ksm_A 79 QYRARNI 85 (276)
T ss_dssp HHHHTTC
T ss_pred HHHHCCC
Confidence 8887775
No 302
>1jx6_A LUXP protein; protein-ligand complex, signaling protein; HET: AI2; 1.50A {Vibrio harveyi} SCOP: c.93.1.1 PDB: 1zhh_A* 2hj9_A*
Probab=39.60 E-value=59 Score=33.73 Aligned_cols=82 Identities=7% Similarity=0.070 Sum_probs=52.0
Q ss_pred cEEEEEEEc---CccccchHHHHHHHHhhcceEEEEEeecCC-CCCCChhhHHHHHHHHhcCCceEEEEEeChhhHHHHH
Q 002309 165 NAVSVIFVD---NEYGRNGVSALNDKLAERRCRISYKSGIPP-ESGVNTGYVMDLLVKVALMESRVIVLHVSPSLGFQVF 240 (938)
Q Consensus 165 ~~vaii~~d---~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~-~~~~~~~d~~~~l~~lk~~~~~viv~~~~~~~~~~~l 240 (938)
..|+++..+ +.|.......+.+++++.|..+.....-.. . .+.......++.+...+.|.||+..........+
T Consensus 44 ~~Igvi~~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~--~~~~~~~~~i~~l~~~~vdgiIi~~~~~~~~~~~ 121 (342)
T 1jx6_A 44 IKISVVYPGQQVSDYWVRNIASFEKRLYKLNINYQLNQVFTRPN--ADIKQQSLSLMEALKSKSDYLIFTLDTTRHRKFV 121 (342)
T ss_dssp EEEEEEECCCSSCCHHHHHHHHHHHHHHHTTCCEEEEEEECCTT--CCHHHHHHHHHHHHHTTCSEEEECCSSSTTHHHH
T ss_pred eEEEEEecCCcccHHHHHHHHHHHHHHHHcCCeEEEEecCCCCc--cCHHHHHHHHHHHHhcCCCEEEEeCChHhHHHHH
Confidence 468888754 566677888999999999986654321111 0 1234445667777778899999843333334566
Q ss_pred HHHHHcCC
Q 002309 241 SVAKYLGM 248 (938)
Q Consensus 241 ~~a~~~g~ 248 (938)
+.+.+.|.
T Consensus 122 ~~~~~~~i 129 (342)
T 1jx6_A 122 EHVLDSTN 129 (342)
T ss_dssp HHHHHHCS
T ss_pred HHHHHcCC
Confidence 67766564
No 303
>2h3h_A Sugar ABC transporter, periplasmic sugar-binding protein; glucose binding protein, periplasmic binding protein, GBP; HET: BGC; 1.70A {Thermotoga maritima} PDB: 2qvc_A* 3c6q_B*
Probab=39.49 E-value=55 Score=33.50 Aligned_cols=79 Identities=11% Similarity=0.064 Sum_probs=52.0
Q ss_pred EEEEEEEcCc-cccchHHHHHHHHhhcceEEEEEeecCCCCCCChhhHHHHHHHHhcCCceEEEEEeCh-hhHHHHHHHH
Q 002309 166 AVSVIFVDNE-YGRNGVSALNDKLAERRCRISYKSGIPPESGVNTGYVMDLLVKVALMESRVIVLHVSP-SLGFQVFSVA 243 (938)
Q Consensus 166 ~vaii~~d~~-~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~lk~~~~~viv~~~~~-~~~~~~l~~a 243 (938)
+|+++..+.. |.......+.+++++.|+.+.... +.. .+.......++.+...+.|.||+.... ......++.+
T Consensus 3 ~Ig~i~~~~~~~~~~~~~gi~~~~~~~g~~~~~~~--~~~--~~~~~~~~~i~~l~~~~vdgiIi~~~~~~~~~~~~~~~ 78 (313)
T 2h3h_A 3 TIGVIGKSVHPYWSQVEQGVKAAGKALGVDTKFFV--PQK--EDINAQLQMLESFIAEGVNGIAIAPSDPTAVIPTIKKA 78 (313)
T ss_dssp EEEEECSCSSHHHHHHHHHHHHHHHHHTCEEEEEC--CSS--SCHHHHHHHHHHHHHTTCSEEEECCSSTTTTHHHHHHH
T ss_pred EEEEEeCCCcHHHHHHHHHHHHHHHHcCCEEEEEC--CCC--CCHHHHHHHHHHHHHcCCCEEEEeCCChHHHHHHHHHH
Confidence 5777764322 777788888999999998876432 111 224445566777777889999886543 3334567777
Q ss_pred HHcCC
Q 002309 244 KYLGM 248 (938)
Q Consensus 244 ~~~g~ 248 (938)
.+.|+
T Consensus 79 ~~~~i 83 (313)
T 2h3h_A 79 LEMGI 83 (313)
T ss_dssp HHTTC
T ss_pred HHCCC
Confidence 77664
No 304
>1ta9_A Glycerol dehydrogenase; oxidoredu; 1.90A {Schizosaccharomyces pombe}
Probab=39.40 E-value=49 Score=36.20 Aligned_cols=96 Identities=10% Similarity=0.005 Sum_probs=63.5
Q ss_pred HHHHHHHhcCCcEEEEEEEcCccccchHHHHHHHHhhcceEEEEEeecCCCCCCChhhHHHHHHHHhcCCceEEEEEeCh
Q 002309 154 AVAEMVSYYGWNAVSVIFVDNEYGRNGVSALNDKLAERRCRISYKSGIPPESGVNTGYVMDLLVKVALMESRVIVLHVSP 233 (938)
Q Consensus 154 ai~~~l~~~~w~~vaii~~d~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~lk~~~~~viv~~~~~ 233 (938)
.+.++++.++.+++.||++...+. ...+.+.+.|++.|+++.. ..+... .+.+++....+.+++ ++|+||-.+.+
T Consensus 81 ~l~~~l~~~g~~rvlIVtd~~~~~-~~~~~v~~~L~~~gi~~~~-~~~~ge--~~~~~v~~~~~~~~~-~~D~IIAvGGG 155 (450)
T 1ta9_A 81 RSYMYVKKWATKSAVVLADQNVWN-ICANKIVDSLSQNGMTVTK-LVFGGE--ASLVELDKLRKQCPD-DTQVIIGVGGG 155 (450)
T ss_dssp GHHHHHTTTCSSEEEEEEEHHHHH-HTHHHHHHHHHHTTCEEEE-EEECSC--CCHHHHHHHHTTSCT-TCCEEEEEESH
T ss_pred HHHHHHHhcCCCEEEEEECccHHH-HHHHHHHHHHHHCCCeEEE-EeeCCC--CCHHHHHHHHHHHhh-CCCEEEEeCCc
Confidence 355677778866999998665443 4678888999989988743 223333 335567777777777 99999977664
Q ss_pred --hhHHHHHHHHHHcCCCCCCeEEEEeC
Q 002309 234 --SLGFQVFSVAKYLGMMGNGYVWIATD 259 (938)
Q Consensus 234 --~~~~~~l~~a~~~g~~~~~~~wi~~~ 259 (938)
-++..++... .| ..++-|-|.
T Consensus 156 SviD~AK~iA~~--~g---iP~I~IPTT 178 (450)
T 1ta9_A 156 KTMDSAKYIAHS--MN---LPSIICPTT 178 (450)
T ss_dssp HHHHHHHHHHHH--TT---CCEEEEESS
T ss_pred HHHHHHHHHHHh--cC---CCEEEEeCC
Confidence 4566666532 23 356666664
No 305
>3lmz_A Putative sugar isomerase; structural genomics, joint center structural genomics, JCSG, protein structure initiative, PS isomerase; HET: MSE CIT PGE; 1.44A {Parabacteroides distasonis}
Probab=39.25 E-value=91 Score=30.75 Aligned_cols=94 Identities=11% Similarity=-0.051 Sum_probs=66.8
Q ss_pred HHHHHHHHHhcCCcEEEEEEEc--CccccchHHHHHHHHhhcceEEEEEeecCCCCCCChhhHHHHHHHHhcCCceEEEE
Q 002309 152 MTAVAEMVSYYGWNAVSVIFVD--NEYGRNGVSALNDKLAERRCRISYKSGIPPESGVNTGYVMDLLVKVALMESRVIVL 229 (938)
Q Consensus 152 ~~ai~~~l~~~~w~~vaii~~d--~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~lk~~~~~viv~ 229 (938)
....++.++..|.+.|=+.... ........+.+++.+++.|+++........ .....+...+...+..+++.|++
T Consensus 32 ~~~~l~~~~~~G~~~vEl~~~~~~~~~~~~~~~~~~~~l~~~gl~i~~~~~~~~---~~~~~~~~~i~~A~~lGa~~v~~ 108 (257)
T 3lmz_A 32 LDTTLKTLERLDIHYLCIKDFHLPLNSTDEQIRAFHDKCAAHKVTGYAVGPIYM---KSEEEIDRAFDYAKRVGVKLIVG 108 (257)
T ss_dssp HHHHHHHHHHTTCCEEEECTTTSCTTCCHHHHHHHHHHHHHTTCEEEEEEEEEE---CSHHHHHHHHHHHHHHTCSEEEE
T ss_pred HHHHHHHHHHhCCCEEEEecccCCCCCCHHHHHHHHHHHHHcCCeEEEEecccc---CCHHHHHHHHHHHHHhCCCEEEe
Confidence 4666777888899888765431 122344568899999999998765432221 23667888888888889999998
Q ss_pred EeChhhHHHHHHHHHHcCC
Q 002309 230 HVSPSLGFQVFSVAKYLGM 248 (938)
Q Consensus 230 ~~~~~~~~~~l~~a~~~g~ 248 (938)
+........+.+.|.+.|+
T Consensus 109 ~p~~~~l~~l~~~a~~~gv 127 (257)
T 3lmz_A 109 VPNYELLPYVDKKVKEYDF 127 (257)
T ss_dssp EECGGGHHHHHHHHHHHTC
T ss_pred cCCHHHHHHHHHHHHHcCC
Confidence 8766677777788877775
No 306
>3huu_A Transcription regulator like protein; PSI-II, NYSGXRC, LAC I, STR genomics, protein structure initiative; 1.95A {Staphylococcus haemolyticus}
Probab=38.85 E-value=41 Score=34.37 Aligned_cols=84 Identities=8% Similarity=0.008 Sum_probs=54.9
Q ss_pred HHhcCCcEEEEEEEc-------CccccchHHHHHHHHhhcceEEEEEeecCCCCCCChhhHHHHHHHHhcCCceEEEEEe
Q 002309 159 VSYYGWNAVSVIFVD-------NEYGRNGVSALNDKLAERRCRISYKSGIPPESGVNTGYVMDLLVKVALMESRVIVLHV 231 (938)
Q Consensus 159 l~~~~w~~vaii~~d-------~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~lk~~~~~viv~~~ 231 (938)
++.-.-+.|+++..+ +.|.......+.+++++.|..+... ... .+.......++.+...+.|.||+..
T Consensus 17 L~~~~~~~Igvi~~~~~~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~---~~~--~~~~~~~~~~~~l~~~~vdgiIi~~ 91 (305)
T 3huu_A 17 LITNKTLTIGLIQKSSAPEIRQNPFNSDVLNGINQACNVRGYSTRMT---VSE--NSGDLYHEVKTMIQSKSVDGFILLY 91 (305)
T ss_dssp ----CCCEEEEECSCCSHHHHTSHHHHHHHHHHHHHHHHHTCEEEEC---CCS--SHHHHHHHHHHHHHTTCCSEEEESS
T ss_pred hhhCCCCEEEEEeCCCccccccCcHHHHHHHHHHHHHHHCCCEEEEE---eCC--CChHHHHHHHHHHHhCCCCEEEEeC
Confidence 344455789988865 4567778889999999999987642 222 1233445677778888999999875
Q ss_pred ChhhHHHHHHHHHHcCC
Q 002309 232 SPSLGFQVFSVAKYLGM 248 (938)
Q Consensus 232 ~~~~~~~~l~~a~~~g~ 248 (938)
.... ...++.+.+.|+
T Consensus 92 ~~~~-~~~~~~l~~~~i 107 (305)
T 3huu_A 92 SLKD-DPIEHLLNEFKV 107 (305)
T ss_dssp CBTT-CHHHHHHHHTTC
T ss_pred CcCC-cHHHHHHHHcCC
Confidence 4432 256667776665
No 307
>2fep_A Catabolite control protein A; CCPA, transcriptional regulator; HET: SEP; 2.45A {Bacillus subtilis} PDB: 2nzu_G* 1sxh_A 1sxi_A 1sxg_A* 2nzv_G* 2oen_G*
Probab=38.70 E-value=76 Score=31.95 Aligned_cols=78 Identities=15% Similarity=0.059 Sum_probs=52.8
Q ss_pred cEEEEEEEc--CccccchHHHHHHHHhhcceEEEEEeecCCCCCCChhhHHHHHHHHhcCCceEEEEEeChhhHHHHHHH
Q 002309 165 NAVSVIFVD--NEYGRNGVSALNDKLAERRCRISYKSGIPPESGVNTGYVMDLLVKVALMESRVIVLHVSPSLGFQVFSV 242 (938)
Q Consensus 165 ~~vaii~~d--~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~lk~~~~~viv~~~~~~~~~~~l~~ 242 (938)
+.|++|..+ +.|.......+.+++++.|..+.... .. .+.......++.+...+.|.||+...... ...++.
T Consensus 17 ~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~---~~--~~~~~~~~~~~~l~~~~vdgiIi~~~~~~-~~~~~~ 90 (289)
T 2fep_A 17 TTVGVIIPDISSIFYSELARGIEDIATMYKYNIILSN---SD--QNMEKELHLLNTMLGKQVDGIVFMGGNIT-DEHVAE 90 (289)
T ss_dssp CEEEEEESCTTSHHHHHHHHHHHHHHHHTTCEEEEEE---CT--TCHHHHHHHHHHHHHTTCSEEEECCSCCC-HHHHHH
T ss_pred CeEEEEeCCCCCchHHHHHHHHHHHHHHcCCEEEEEe---CC--CCHHHHHHHHHHHHhCCCCEEEEecCCCC-HHHHHH
Confidence 578888854 56777788899999999999876432 11 22444556777777889999988754322 345566
Q ss_pred HHHcCC
Q 002309 243 AKYLGM 248 (938)
Q Consensus 243 a~~~g~ 248 (938)
+.+.|.
T Consensus 91 l~~~~i 96 (289)
T 2fep_A 91 FKRSPV 96 (289)
T ss_dssp HHHSSS
T ss_pred HHhcCC
Confidence 666564
No 308
>3hhg_A Transcriptional regulator, LYSR family; transcription factor, structur genomics, oxford protein production facility, OPPF; 3.20A {Neisseria meningitidis serogroup B}
Probab=38.10 E-value=23 Score=36.06 Aligned_cols=69 Identities=7% Similarity=-0.002 Sum_probs=41.0
Q ss_pred cccCCHHHHHHHHhcCCCCCceEEEEecchhHHHHHhcCCcEEEe-Ccccc--ccceEeeecCCCcchhhHHHHHHhh
Q 002309 727 VALRTPEDYAKALKDGPGKGGVAAVVDERPYVELFLSSQCSFRIV-GQEFT--KSGWGFAFPRDSPLAVDLSSAILEL 801 (938)
Q Consensus 727 ~~~~~~~~~~~~l~~~~~~g~~~a~i~~~~~~~~~~~~~~~l~~~-~~~~~--~~~~~~~~~k~spl~~~i~~~il~l 801 (938)
...++.....+.+.. |...+++-+.....+.... .+..+ ..... ...++++.+++.+....+...+..+
T Consensus 218 ~~~~~~~~~~~~v~~----G~Gia~lp~~~~~~~~~~g--~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~f~~~l 289 (306)
T 3hhg_A 218 FTASSGEILRSLCLS----GCGIVCLSDFLVDNDIAEG--KLIPLLAEQTSDKTHPFNAVYYSDKAVNLRLRVFLDFL 289 (306)
T ss_dssp SEESSHHHHHHHHHT----TSCEEEEEHHHHHHHHHHT--SSEECSTTTBCCCEEEEEEEECSGGGGCHHHHHHHHHH
T ss_pred EEECCHHHHHHHHHh----CCCeEeccHHHHHHHHhCC--CcEEeCCCCcCCCCccEEEEecCCCcCCHHHHHHHHHH
Confidence 346788888999988 6666766655444333222 33333 32222 3467888888877666666555444
No 309
>2fp4_A Succinyl-COA ligase [GDP-forming] alpha-chain, mitochondrial; active site phosphohistidine residue; HET: NEP GTP; 2.08A {Sus scrofa} SCOP: c.2.1.8 c.23.4.1 PDB: 2fpg_A* 2fpi_A* 2fpp_A* 1euc_A* 1eud_A*
Probab=37.24 E-value=3.5e+02 Score=27.51 Aligned_cols=144 Identities=7% Similarity=-0.082 Sum_probs=86.5
Q ss_pred ChHHHHHHHHHHHhcCcEEE-E-cCCCh-hHHHHHHHhhccC-CccEEEcccCCCCCCCCCCCceEEecCCchHHHHHHH
Q 002309 81 SGFIGMVEALRFMETDIVAI-I-GPQCS-TVAHIVSYVSNEL-QVPLLSFGVTDPTLSSLQYPFFVRTTQSDSYQMTAVA 156 (938)
Q Consensus 81 ~~~~a~~~a~~li~~~V~av-i-Gp~~s-~~~~~va~~~~~~-~iP~Is~~~~~~~l~~~~~p~~~r~~ps~~~~~~ai~ 156 (938)
-+..+...+.++++.++.++ + -+..+ .....+...+... ++.+|.|.+.. +-... ....-..|.
T Consensus 80 P~~~~~~~~~e~i~~Gi~~iv~~t~G~~~~~~~~l~~~a~~~~gi~liGPnc~G--ii~p~-~~~~~~~~~--------- 147 (305)
T 2fp4_A 80 PPPFAAAAINEAIDAEVPLVVCITEGIPQQDMVRVKHRLLRQGKTRLIGPNCPG--VINPG-ECKIGIMPG--------- 147 (305)
T ss_dssp CHHHHHHHHHHHHHTTCSEEEECCCCCCHHHHHHHHHHHTTCSSCEEECSSSCE--EEETT-TEEEESSCG---------
T ss_pred CHHHHHHHHHHHHHCCCCEEEEECCCCChHHHHHHHHHHHhcCCcEEEeCCCCe--Eeccc-ccceeeccc---------
Confidence 45566667777888777663 3 33222 2344788889999 99998765432 11110 111112221
Q ss_pred HHHHhcCCcEEEEEEEcCccccchHHHHHHHHhhcceEEEEEeecCCCCCC-ChhhHHHHHHHHh-cCCceEEEEEeCh-
Q 002309 157 EMVSYYGWNAVSVIFVDNEYGRNGVSALNDKLAERRCRISYKSGIPPESGV-NTGYVMDLLVKVA-LMESRVIVLHVSP- 233 (938)
Q Consensus 157 ~~l~~~~w~~vaii~~d~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~-~~~d~~~~l~~lk-~~~~~viv~~~~~- 233 (938)
..+.--+|++|.+... ....+.+.+.+.|+-+.....+-.. . ...++.+.|+.+. +.++++|+++...
T Consensus 148 ---~~~~~G~va~vSqSG~----l~~~~~~~~~~~g~G~S~~vs~G~~--~~~~~~~~d~l~~~~~Dp~T~~I~l~~E~~ 218 (305)
T 2fp4_A 148 ---HIHKKGRIGIVSRSGT----LTYEAVHQTTQVGLGQSLCVGIGGD--PFNGTDFTDCLEIFLNDPATEGIILIGEIG 218 (305)
T ss_dssp ---GGCCEEEEEEEESCSH----HHHHHHHHHHHTTCCEEEEEECCSS--SSCSCCHHHHHHHHHHCTTCCEEEEEEESS
T ss_pred ---cCCCCCCEEEEecchH----HHHHHHHHHHhcCCCeeEEeccCCC--cCCCCCHHHHHHHHhcCCCCcEEEEEEecC
Confidence 1233457999987765 3455666777777666554444332 2 1356677777764 4689999999886
Q ss_pred ----hhHHHHHHHHHH
Q 002309 234 ----SLGFQVFSVAKY 245 (938)
Q Consensus 234 ----~~~~~~l~~a~~ 245 (938)
.++..|++.+.+
T Consensus 219 g~~e~~~~~f~~~~~~ 234 (305)
T 2fp4_A 219 GNAEENAAEFLKQHNS 234 (305)
T ss_dssp SSHHHHHHHHHHHHSC
T ss_pred CchhhHHHHHHHHHHH
Confidence 458889988764
No 310
>2fvy_A D-galactose-binding periplasmic protein; periplasmic binding protien, hinge, chemotaxis, transport,; HET: BGC; 0.92A {Escherichia coli} SCOP: c.93.1.1 PDB: 1glg_A* 2fw0_A* 2gbp_A* 2qw1_A* 2hph_A* 2ipn_A* 2ipm_A* 2ipl_A* 1gca_A* 1gcg_A 3ga5_A* 3gbp_A*
Probab=36.67 E-value=90 Score=31.59 Aligned_cols=79 Identities=8% Similarity=0.067 Sum_probs=53.7
Q ss_pred cEEEEEEE--cCccccchHHHHHHHHhhcce-EEEEEeecCCCCCCChhhHHHHHHHHhcCCceEEEEEeChh-hHHHHH
Q 002309 165 NAVSVIFV--DNEYGRNGVSALNDKLAERRC-RISYKSGIPPESGVNTGYVMDLLVKVALMESRVIVLHVSPS-LGFQVF 240 (938)
Q Consensus 165 ~~vaii~~--d~~~g~~~~~~l~~~l~~~g~-~v~~~~~~~~~~~~~~~d~~~~l~~lk~~~~~viv~~~~~~-~~~~~l 240 (938)
++|+++.. ++.|.......+.+++++.|. .+..... . .+.......++.+...+.|.||+..... .....+
T Consensus 3 ~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~---~--~~~~~~~~~~~~~~~~~vdgiii~~~~~~~~~~~~ 77 (309)
T 2fvy_A 3 TRIGVTIYKYDDNFMSVVRKAIEQDAKAAPDVQLLMNDS---Q--NDQSKQNDQIDVLLAKGVKALAINLVDPAAAGTVI 77 (309)
T ss_dssp EEEEEEESCTTSHHHHHHHHHHHHHHHTCTTEEEEEEEC---T--TCHHHHHHHHHHHHHTTCSEEEECCSSGGGHHHHH
T ss_pred cEEEEEeccCCcHHHHHHHHHHHHHHHhcCCeEEEEecC---C--CCHHHHHHHHHHHHHcCCCEEEEeCCCcchhHHHH
Confidence 46788875 456777788899999999996 7654321 1 1244455667777778899998875443 345677
Q ss_pred HHHHHcCC
Q 002309 241 SVAKYLGM 248 (938)
Q Consensus 241 ~~a~~~g~ 248 (938)
+.+.+.|+
T Consensus 78 ~~~~~~~i 85 (309)
T 2fvy_A 78 EKARGQNV 85 (309)
T ss_dssp HHHHTTTC
T ss_pred HHHHHCCC
Confidence 77777664
No 311
>3lte_A Response regulator; structural genomics, PSI, protein structure initiative, NYSG YORK structural genomix research consortium, nysgxrc; 2.00A {Bermanella marisrubri}
Probab=36.65 E-value=1.4e+02 Score=25.19 Aligned_cols=68 Identities=16% Similarity=0.215 Sum_probs=42.9
Q ss_pred cEEEEEEEcCccccchHHHHHHHHhhcceEEEEEeecCCCCCCChhhHHHHHHHHhcCCceEEEEEeC--hhhHHHHHHH
Q 002309 165 NAVSVIFVDNEYGRNGVSALNDKLAERRCRISYKSGIPPESGVNTGYVMDLLVKVALMESRVIVLHVS--PSLGFQVFSV 242 (938)
Q Consensus 165 ~~vaii~~d~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~lk~~~~~viv~~~~--~~~~~~~l~~ 242 (938)
.+|.++- |+. .....+.+.+++.|..+... .+....+..+++..+++|++... ..+...++++
T Consensus 7 ~~ilivd-d~~---~~~~~l~~~L~~~g~~v~~~-----------~~~~~a~~~l~~~~~dlii~d~~l~~~~g~~~~~~ 71 (132)
T 3lte_A 7 KRILVVD-DDQ---AMAAAIERVLKRDHWQVEIA-----------HNGFDAGIKLSTFEPAIMTLDLSMPKLDGLDVIRS 71 (132)
T ss_dssp CEEEEEC-SCH---HHHHHHHHHHHHTTCEEEEE-----------SSHHHHHHHHHHTCCSEEEEESCBTTBCHHHHHHH
T ss_pred ccEEEEE-CCH---HHHHHHHHHHHHCCcEEEEe-----------CCHHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHH
Confidence 3555543 332 24566777788788766421 12344566667778999999755 3457788888
Q ss_pred HHHcC
Q 002309 243 AKYLG 247 (938)
Q Consensus 243 a~~~g 247 (938)
.++..
T Consensus 72 l~~~~ 76 (132)
T 3lte_A 72 LRQNK 76 (132)
T ss_dssp HHTTT
T ss_pred HHhcC
Confidence 88755
No 312
>3uhf_A Glutamate racemase; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta sandwich fold, isomerase; HET: DGL; 1.83A {Campylobacter jejuni} PDB: 3uho_A* 3uhp_A
Probab=36.62 E-value=2e+02 Score=28.87 Aligned_cols=58 Identities=9% Similarity=-0.065 Sum_probs=36.6
Q ss_pred CCCEEEEEEccCC------CChHHHHHHH----HHHHhcCcEEEEcCCChhHHHHHHHhhccCCccEEE
Q 002309 67 HGTKLNITMQSSN------CSGFIGMVEA----LRFMETDIVAIIGPQCSTVAHIVSYVSNELQVPLLS 125 (938)
Q Consensus 67 ~g~~l~~~~~D~~------~~~~~a~~~a----~~li~~~V~aviGp~~s~~~~~va~~~~~~~iP~Is 125 (938)
|+..+.+ +.|+. .+.....+.+ ..|.+.|+.+|+=+..+..+.++..+-+..++|+|.
T Consensus 48 P~e~~iy-~~D~a~~PYG~ks~e~i~~~~~~~~~~L~~~g~d~IVIACNTa~~~al~~lr~~~~iPvig 115 (274)
T 3uhf_A 48 LFDEIIY-YGDTARVPYGVKDKDTIIKFCLEALDFFEQFQIDMLIIACNTASAYALDALRAKAHFPVYG 115 (274)
T ss_dssp CCSEEEE-EECTTTCCCTTSCHHHHHHHHHHHHHHHTTSCCSEEEECCHHHHHHSHHHHHHHCSSCEEC
T ss_pred CCCCEEE-EecCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEeCCChhHHHHHHHHHhcCCCEEc
Confidence 6666644 34542 2443333333 334344999999877777766667777788999995
No 313
>3tmg_A Glycine betaine, L-proline ABC transporter, glycine/betaine/L-proline-binding protein...; ssgcid, structural genomics; 1.90A {Borrelia burgdorferi}
Probab=36.43 E-value=2e+02 Score=28.83 Aligned_cols=40 Identities=13% Similarity=0.294 Sum_probs=28.5
Q ss_pred HHHHHHHHHhCCCCccEEEEecCCCCCCCChhHHHHhhhcceecEEecc
Q 002309 495 IDVFTAAVNLLPYAVPYQFVAFGDGHKNPSYTQLVDSITTGVFDAVVGD 543 (938)
Q Consensus 495 ~dll~~la~~l~f~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~D~~~~~ 543 (938)
..+...+.+.+|++++ ..+ ++-.-+...|.+|++|+.+..
T Consensus 32 ~~i~~~~Le~~G~~Ve--~~~-------~~~~~~~~AL~~G~iD~~~e~ 71 (280)
T 3tmg_A 32 TNVLKVVFEKMGYNAE--IFS-------VTTSIMYQYLASGKIDGTVSS 71 (280)
T ss_dssp HHHHHHHHHHTTEEEE--EEE-------CCHHHHHHHHHTTSSSEEEEE
T ss_pred HHHHHHHHHHCCCceE--EEE-------CCcHHHHHHHHCCCCcEEEec
Confidence 4566666677897644 444 234678899999999998763
No 314
>2hpg_A ABC transporter, periplasmic substrate-binding protein; periplasmic binding protein, thermophilic proteins, trap- transport; HET: MSE; 1.90A {Thermotoga maritima}
Probab=36.12 E-value=39 Score=35.21 Aligned_cols=101 Identities=17% Similarity=-0.032 Sum_probs=60.1
Q ss_pred CCCCChHHhhhCCCCeeEEeCchHHHHHHHhcccccccccccCCHHHHHHHHhcCCCCCceEEEEecchhHHH-HHhcCC
Q 002309 688 SPINGIESLRKSDDPIGYQEGSFAEYYLSQELNISKSRLVALRTPEDYAKALKDGPGKGGVAAVVDERPYVEL-FLSSQC 766 (938)
Q Consensus 688 ~~i~s~~dL~~~~~~i~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~a~i~~~~~~~~-~~~~~~ 766 (938)
.+|++++||. |++|.+..+......+ +..+.. .++ -...|...+|++ |.+|+.....+.+.- -..+-.
T Consensus 148 ~pI~s~~DLk--G~KiRv~~~~~~~~~~-~alGa~---pv~-m~~~Evy~ALq~----G~VDg~~~p~~~~~~~~~~ev~ 216 (327)
T 2hpg_A 148 KPIRKPEDLN--GLRIRTPGAPAWQESI-RSLGAI---PVA-VNFGEIYTAVQT----RAVDGAELTYANVYNGGLYEVL 216 (327)
T ss_dssp SCCSSGGGGT--TCEEECCSSHHHHHHH-HHHTSE---EEC-CCGGGHHHHHHT----TSCSEEEECHHHHHHTTGGGTC
T ss_pred CCCCCHHHHC--CCEEEeCCCHHHHHHH-HHcCCE---eee-cCHHHHHHHHHc----CCeeEEECCHHHHHHcChhhhc
Confidence 6899999999 9999887544455566 455542 222 256788999999 899999886544321 112334
Q ss_pred cEEEeCccccccceEeeecCCCc--chhhHHHHHHh
Q 002309 767 SFRIVGQEFTKSGWGFAFPRDSP--LAVDLSSAILE 800 (938)
Q Consensus 767 ~l~~~~~~~~~~~~~~~~~k~sp--l~~~i~~~il~ 800 (938)
++....... .....+.+.+..- |-+.....|.+
T Consensus 217 ky~~~~~~~-~~~~~~~~n~~~~~~L~~e~q~~i~~ 251 (327)
T 2hpg_A 217 KYMSETGHF-LLINFEIVSADWFNSLPKEYQKIIEE 251 (327)
T ss_dssp CEEEEEEEE-EEEEEEEEEHHHHHHSCHHHHHHHHH
T ss_pred cEEEecCcc-hhceEEEEeHHHHhcCCHHHHHHHHH
Confidence 544433322 3445667776521 44444444433
No 315
>3k9c_A Transcriptional regulator, LACI family protein; PSI-II, 11026W, structural genomics, PR structure initiative; 2.14A {Rhodococcus jostii}
Probab=35.90 E-value=91 Score=31.31 Aligned_cols=81 Identities=7% Similarity=0.016 Sum_probs=51.5
Q ss_pred HhcCCcEEEEEEE-cCccccchHHHHHHHHhhcceEEEEEeecCCCCCCChhhHHHHHHHHhcCCceEEEEEeChhhHHH
Q 002309 160 SYYGWNAVSVIFV-DNEYGRNGVSALNDKLAERRCRISYKSGIPPESGVNTGYVMDLLVKVALMESRVIVLHVSPSLGFQ 238 (938)
Q Consensus 160 ~~~~w~~vaii~~-d~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~lk~~~~~viv~~~~~~~~~~ 238 (938)
+.-.-+.|+++.+ ++.|.......+.+++++.|+.+.....-.. .. -...++.+...+.|.||+....... .
T Consensus 8 ~~~~~~~Igvi~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~-----~~-~~~~~~~l~~~~vdgiIi~~~~~~~-~ 80 (289)
T 3k9c_A 8 RQASSRLLGVVFELQQPFHGDLVEQIYAAATRRGYDVMLSAVAPS-----RA-EKVAVQALMRERCEAAILLGTRFDT-D 80 (289)
T ss_dssp -----CEEEEEEETTCHHHHHHHHHHHHHHHHTTCEEEEEEEBTT-----BC-HHHHHHHHTTTTEEEEEEETCCCCH-H
T ss_pred hcCCCCEEEEEEecCCchHHHHHHHHHHHHHHCCCEEEEEeCCCC-----HH-HHHHHHHHHhCCCCEEEEECCCCCH-H
Confidence 3334467888772 2456667788999999999998765433221 22 4567778888899999988654443 5
Q ss_pred HHHHHHHcCC
Q 002309 239 VFSVAKYLGM 248 (938)
Q Consensus 239 ~l~~a~~~g~ 248 (938)
.++.+.+ |+
T Consensus 81 ~~~~~~~-~i 89 (289)
T 3k9c_A 81 ELGALAD-RV 89 (289)
T ss_dssp HHHHHHT-TS
T ss_pred HHHHHHc-CC
Confidence 5566654 54
No 316
>2czl_A Hypothetical protein TTHA1568; conserved hypothetical protein, extremely thermoph bacteria, structural genomics, NPPSFA; HET: CME TLA XPE; 1.55A {Thermus thermophilus} SCOP: c.94.1.1 PDB: 2dbp_A* 3a3u_A*
Probab=34.78 E-value=96 Score=30.82 Aligned_cols=59 Identities=12% Similarity=0.080 Sum_probs=37.9
Q ss_pred hHHhhhCCCCeeEEeCchHHHHHHHhcccccccccccCCHHHHHHHHhcCCCCCceEEEEec-chhHH
Q 002309 693 IESLRKSDDPIGYQEGSFAEYYLSQELNISKSRLVALRTPEDYAKALKDGPGKGGVAAVVDE-RPYVE 759 (938)
Q Consensus 693 ~~dL~~~~~~i~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~a~i~~-~~~~~ 759 (938)
++||. |++|++..++....++.+..- ...+++.. ...+...++.+ |++||.+.- .+.+.
T Consensus 91 ~~dLk--Gk~Ia~~~~~~~~~~ll~~ll-~~~~~~~~-~~~~~~~al~~----G~vDa~~~~~ep~~~ 150 (272)
T 2czl_A 91 LQALE--GLRVAVPGRHTTAYFLLSLYA-QGFVPVEV-RYDRILPMVAQ----GEVEAGLIIHESRFT 150 (272)
T ss_dssp CSCCT--TCEEEESCTTSHHHHHHHHHC-SSCEEEEC-CGGGHHHHHHT----TSSSEEEECTTHHHH
T ss_pred hHHhC--CCEEEeCCCCchHHHHHHHHh-ccCceeec-ChHHHHHHHHC----CCCCEEEEecchhhh
Confidence 77887 999999876555444333221 11233333 45588889998 899999874 55555
No 317
>3cfx_A UPF0100 protein MA_0280; ABC transporter, binding protein, molybdate, tungstate, LIGA unknown function, transport protein; 1.60A {Methanosarcina acetivorans}
Probab=34.74 E-value=3.4e+02 Score=27.10 Aligned_cols=70 Identities=16% Similarity=0.078 Sum_probs=42.2
Q ss_pred HHHHHHHHHh-CCCCccEEEEecCCCCCCCChhHHHHhhhc-ce-ecEEeccEe--ee-cCceeeeeeccceecccEEEE
Q 002309 495 IDVFTAAVNL-LPYAVPYQFVAFGDGHKNPSYTQLVDSITT-GV-FDAVVGDIT--IV-TNRTKIVDFSQPYAASGLVVV 568 (938)
Q Consensus 495 ~dll~~la~~-l~f~~~~~~~~~~~~~~~~~~~~~i~~l~~-g~-~D~~~~~~~--~t-~~r~~~v~fs~p~~~~~~~~l 568 (938)
-++++.+.++ -|.+++ +.. ++-..++..+.+ |. +|+.+..-. +. ......++...||....++++
T Consensus 20 ~~l~~~F~~~~~gi~V~--~~~-------~~s~~l~~~i~~~g~~~Dv~~~a~~~~~~~l~~~gl~~~~~~~~~~~l~i~ 90 (296)
T 3cfx_A 20 EELEAEFEAQHPGVDVQ--REA-------AGSAQSVRKITELGKKADVLASADYALIPSLMVPEYADWYAAFARNQMILA 90 (296)
T ss_dssp HHHHHHHHHHSTTCEEE--EEE-------CCHHHHHHHHHTSCCCCSEEEESSTTHHHHHTTTTTCSCEEEEEECCEEEE
T ss_pred HHHHHHHHHHCCCceEE--EEe-------CchHHHHHHHHhCCCCCcEEEECChhhHHHHHhCCCccceeeeEeeeEEEE
Confidence 4677777777 476644 433 446678888887 64 898765311 11 011122344567778888888
Q ss_pred EeccC
Q 002309 569 VPFRK 573 (938)
Q Consensus 569 v~~~~ 573 (938)
+++..
T Consensus 91 ~~~~~ 95 (296)
T 3cfx_A 91 YTNES 95 (296)
T ss_dssp ECTTS
T ss_pred EeCCC
Confidence 87654
No 318
>1i4n_A Indole-3-glycerol phosphate synthase; thermostable TIM-barrel protein, salt bridges, electrostatic interactions, lyase; 2.50A {Thermotoga maritima} SCOP: c.1.2.4 PDB: 1j5t_A
Probab=34.45 E-value=1.2e+02 Score=30.09 Aligned_cols=85 Identities=14% Similarity=0.076 Sum_probs=55.7
Q ss_pred HHHHHHHhcCCcEEEEEEEcCccccchHHHHHHHHhhcceEEEEEeecCCCCCCChhhHHHHHHHHhcCCceEEEEEeCh
Q 002309 154 AVAEMVSYYGWNAVSVIFVDNEYGRNGVSALNDKLAERRCRISYKSGIPPESGVNTGYVMDLLVKVALMESRVIVLHVSP 233 (938)
Q Consensus 154 ai~~~l~~~~w~~vaii~~d~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~lk~~~~~viv~~~~~ 233 (938)
.++.-.... -.-+.+++ |..|..+..+.+...-+..++.|.....+ . +.+ ++.+.+..++|+|.+.+..
T Consensus 65 ~iA~~y~~~-A~~IsVlT-d~~~F~gs~~dL~~ir~~v~lPvLrKDfi-~------~~~--qi~ea~~~GAD~ilLi~a~ 133 (251)
T 1i4n_A 65 DFIRMYDEL-ADAISILT-EKHYFKGDPAFVRAARNLTCRPILAKDFY-I------DTV--QVKLASSVGADAILIIARI 133 (251)
T ss_dssp HHHHHHHHH-CSEEEEEC-CCSSSCCCTHHHHHHHTTCCSCEEEECCC-C------STH--HHHHHHHTTCSEEEEEGGG
T ss_pred HHHHHHHHh-CCceEEEe-cccccCCCHHHHHHHHHhCCCCEEEeeCC-C------CHH--HHHHHHHcCCCEEEEeccc
Confidence 334333333 45666665 66666667777777666666666644322 2 233 4666888999999998665
Q ss_pred ---hhHHHHHHHHHHcCCC
Q 002309 234 ---SLGFQVFSVAKYLGMM 249 (938)
Q Consensus 234 ---~~~~~~l~~a~~~g~~ 249 (938)
.....+++.|+++||.
T Consensus 134 l~~~~l~~l~~~a~~lGl~ 152 (251)
T 1i4n_A 134 LTAEQIKEIYEAAEELGMD 152 (251)
T ss_dssp SCHHHHHHHHHHHHTTTCE
T ss_pred CCHHHHHHHHHHHHHcCCe
Confidence 4678899999999873
No 319
>3cfz_A UPF0100 protein MJ1186; ABC transporter, binding protein, molybdate, tungstate, ligand, unknown function, transport protein; 1.70A {Methanocaldococcus jannaschii}
Probab=34.09 E-value=3.7e+02 Score=26.82 Aligned_cols=71 Identities=13% Similarity=0.015 Sum_probs=42.1
Q ss_pred eHHHHHHHHHh-CCCCccEEEEecCCCCCCCChhHHHHhhhc-ce-ecEEeccEeeec---CceeeeeeccceecccEEE
Q 002309 494 CIDVFTAAVNL-LPYAVPYQFVAFGDGHKNPSYTQLVDSITT-GV-FDAVVGDITIVT---NRTKIVDFSQPYAASGLVV 567 (938)
Q Consensus 494 ~~dll~~la~~-l~f~~~~~~~~~~~~~~~~~~~~~i~~l~~-g~-~D~~~~~~~~t~---~r~~~v~fs~p~~~~~~~~ 567 (938)
.-++++.+.++ -|.++ .+.. ++-..++..+.+ |. +|+.+..-.... .....++...||....+++
T Consensus 19 ~~~l~~~F~~~~~gi~V--~~~~-------~~s~~l~~~i~~~g~~~Dv~~~a~~~~~~~l~~~gl~~~~~~~~~~~lvi 89 (292)
T 3cfz_A 19 FEEYEKMFEKEHPNVDV--EREP-------AGSVACVRKIIDLGKKADILASADYSLIPQMMMPKYADWYVMFARNEIVL 89 (292)
T ss_dssp HHHHHHHHHHHCTTEEE--EEEE-------ECHHHHHHHHHTSCCCCSEEEESSTTHHHHHTTTTTCSCCEEEEECCEEE
T ss_pred HHHHHHHHHHHCCCceE--EEEe-------CCHHHHHHHHHhcCCCCcEEEECChHHHHHHHhCCCccceeeeEeccEEE
Confidence 34677777777 47554 4433 346678888887 65 898765311101 1112234556777888888
Q ss_pred EEeccC
Q 002309 568 VVPFRK 573 (938)
Q Consensus 568 lv~~~~ 573 (938)
++++..
T Consensus 90 ~~~~~~ 95 (292)
T 3cfz_A 90 AYTDKS 95 (292)
T ss_dssp EECTTS
T ss_pred EEcCCC
Confidence 887654
No 320
>3qvl_A Putative hydantoin racemase; isomerase; HET: 5HY; 1.82A {Klebsiella pneumoniae subsp} PDB: 3qvk_A* 3qvj_A
Probab=33.95 E-value=3.4e+02 Score=26.49 Aligned_cols=84 Identities=15% Similarity=0.113 Sum_probs=47.1
Q ss_pred EEEEEEeeCCCcchhHHHHHHHHHHHHHhcCCCCCCCCEEEEEEccCCC-------ChHHHHHHHH----HHHhcCcEEE
Q 002309 32 VNVGALFTLDSTIGRVAKIAIEEAVKDVNSNSSILHGTKLNITMQSSNC-------SGFIGMVEAL----RFMETDIVAI 100 (938)
Q Consensus 32 i~IG~i~~~~~~~g~~~~~a~~~Av~~iN~~~~il~g~~l~~~~~D~~~-------~~~~a~~~a~----~li~~~V~av 100 (938)
.+|.+|-|.++. .+-..+.-+++.+. + +|.++.....+..- +...++.... ++..+++.+|
T Consensus 2 mrilvINPnts~---~~T~~i~~~~~~~~--~---p~~~i~~~t~~~gp~~i~~~~d~~~a~~~l~~~~~~l~~~g~d~i 73 (245)
T 3qvl_A 2 VRIQVINPNTSL---AMTETIGAAARAVA--A---PGTEILAVCPRAGVPSIEGHFDEAIAAVGVLEQIRAGREQGVDGH 73 (245)
T ss_dssp EEEEEECSSCCH---HHHHHHHHHHHHHC--C---TTEEEEEECCSSSCSSCCSHHHHHHHHHHHHHHHHHHHHHTCSEE
T ss_pred CEEEEEeCCCCH---HHHHHHHHHHHHhc--C---CCCEEEEEeCCCCchhhcChhHHHHHHHHHHHHHHHHHHCCCCEE
Confidence 478899998863 23345555555543 1 57788776665431 2233332222 3334488888
Q ss_pred EcCCChhHHHHHHHhhccCCccEEE
Q 002309 101 IGPQCSTVAHIVSYVSNELQVPLLS 125 (938)
Q Consensus 101 iGp~~s~~~~~va~~~~~~~iP~Is 125 (938)
+=+-.+... +..+-+..++|+|.
T Consensus 74 viaCnt~~~--l~~lr~~~~iPvig 96 (245)
T 3qvl_A 74 VIASFGDPG--LLAARELAQGPVIG 96 (245)
T ss_dssp EEC-CCCTT--HHHHHHHCSSCEEE
T ss_pred EEeCCChhH--HHHHHHHcCCCEEC
Confidence 755555443 24444566899886
No 321
>3r7f_A Aspartate carbamoyltransferase; aspartate transcarbamoylase, carbamoyl phosphate, transferas catalytic cycle; 2.10A {Bacillus subtilis} PDB: 3r7d_A 3r7l_A* 2at2_A
Probab=33.91 E-value=1.8e+02 Score=29.66 Aligned_cols=134 Identities=16% Similarity=0.151 Sum_probs=75.5
Q ss_pred EEEEEEeeCCCcchhHHHHHHHHHHHHHhcCCCCCCCCEEEEEEccCCCChHHHHHHHHHHHhc-CcEEEE--cCCChhH
Q 002309 32 VNVGALFTLDSTIGRVAKIAIEEAVKDVNSNSSILHGTKLNITMQSSNCSGFIGMVEALRFMET-DIVAII--GPQCSTV 108 (938)
Q Consensus 32 i~IG~i~~~~~~~g~~~~~a~~~Av~~iN~~~~il~g~~l~~~~~D~~~~~~~a~~~a~~li~~-~V~avi--Gp~~s~~ 108 (938)
-.|+.+|...+. ..+.+|+.|+.++ .|..+.+-..++.-.-...+.-..+.++. ++.+|+ .+.. ..
T Consensus 37 k~la~lF~e~ST---RTR~SFE~A~~~L-------Gg~~i~l~~~~ss~~kgEsl~DTarvLs~~~~D~iviR~~~~-~~ 105 (304)
T 3r7f_A 37 KFAANLFFEPST---RTRFSFEVAEKKL-------GMNVLNLDGTSTSVQKGETLYDTIRTLESIGVDVCVIRHSED-EY 105 (304)
T ss_dssp CEEEEEESSCCS---HHHHHHHHHHHHT-------TCEEEEEETTSTTSCSSSCHHHHHHHHHHHTCCEEEEECSST-TC
T ss_pred CEEEEEecCCCh---hHHHhHHHHHHHC-------CCeEEEECcccccCCCCCCHHHHHHHHHHhcCCEEEEecCCh-hH
Confidence 458888877764 6789999999987 24445554444432211222223333333 444444 4432 33
Q ss_pred HHHHHHhhccCCccEEEcccCCCCCCCCCCCceEEecCCchHHHHHHHHHH---Hhc---CCcEEEEEEEcCccccchHH
Q 002309 109 AHIVSYVSNELQVPLLSFGVTDPTLSSLQYPFFVRTTQSDSYQMTAVAEMV---SYY---GWNAVSVIFVDNEYGRNGVS 182 (938)
Q Consensus 109 ~~~va~~~~~~~iP~Is~~~~~~~l~~~~~p~~~r~~ps~~~~~~ai~~~l---~~~---~w~~vaii~~d~~~g~~~~~ 182 (938)
.. .+++..+||+|....++ ...| .+++++++ +++ ...+|+++. |.-......
T Consensus 106 ~~---~la~~~~vPVINagdg~-----~~HP------------tQaLaDl~Ti~e~~g~l~glkva~vG--D~~~~rva~ 163 (304)
T 3r7f_A 106 YE---ELVSQVNIPILNAGDGC-----GQHP------------TQSLLDLMTIYEEFNTFKGLTVSIHG--DIKHSRVAR 163 (304)
T ss_dssp HH---HHHHHCSSCEEESCCTT-----SCCH------------HHHHHHHHHHHHHHSCCTTCEEEEES--CCTTCHHHH
T ss_pred HH---HHHHhCCCCEEeCCCCC-----CcCc------------HHHHHHHHHHHHHhCCCCCCEEEEEc--CCCCcchHH
Confidence 33 34456689999742221 1122 57777764 333 456787775 222224667
Q ss_pred HHHHHHhhcceEEEEE
Q 002309 183 ALNDKLAERRCRISYK 198 (938)
Q Consensus 183 ~l~~~l~~~g~~v~~~ 198 (938)
.+..++...|.++...
T Consensus 164 Sl~~~~~~~G~~v~~~ 179 (304)
T 3r7f_A 164 SNAEVLTRLGARVLFS 179 (304)
T ss_dssp HHHHHHHHTTCEEEEE
T ss_pred HHHHHHHHcCCEEEEE
Confidence 7788888889887653
No 322
>3kke_A LACI family transcriptional regulator; structural genomics, DNA-binding, transcription regulation, PSI-2; 2.20A {Mycobacterium smegmatis str}
Probab=33.65 E-value=58 Score=33.14 Aligned_cols=84 Identities=10% Similarity=-0.004 Sum_probs=53.7
Q ss_pred HHhcCCcEEEEEEEc--CccccchHHHHHHHHhhcceEEEEEeecCCCCCCChhhHHHHHHHHhcCCceEEEEEeChhhH
Q 002309 159 VSYYGWNAVSVIFVD--NEYGRNGVSALNDKLAERRCRISYKSGIPPESGVNTGYVMDLLVKVALMESRVIVLHVSPSLG 236 (938)
Q Consensus 159 l~~~~w~~vaii~~d--~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~lk~~~~~viv~~~~~~~~ 236 (938)
++.-.-+.|++|..+ +.|.......+.+++++.|..+..... . .+.......++.+...+.|.||+.......
T Consensus 10 L~~~~s~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~-~----~~~~~~~~~~~~l~~~~vdgiI~~~~~~~~ 84 (303)
T 3kke_A 10 LRHSRSGTIGLIVPDVNNAVFADMFSGVQMAASGHSTDVLLGQI-D----APPRGTQQLSRLVSEGRVDGVLLQRREDFD 84 (303)
T ss_dssp -------CEEEEESCTTSTTHHHHHHHHHHHHHHTTCCEEEEEC-C----STTHHHHHHHHHHHSCSSSEEEECCCTTCC
T ss_pred HhhCCCCEEEEEeCCCcChHHHHHHHHHHHHHHHCCCEEEEEeC-C----CChHHHHHHHHHHHhCCCcEEEEecCCCCc
Confidence 333344578888854 557778889999999999988764322 1 124455677888888899999987654432
Q ss_pred HHHHHHHHHcCC
Q 002309 237 FQVFSVAKYLGM 248 (938)
Q Consensus 237 ~~~l~~a~~~g~ 248 (938)
...++.+.+ |+
T Consensus 85 ~~~~~~l~~-~i 95 (303)
T 3kke_A 85 DDMLAAVLE-GV 95 (303)
T ss_dssp HHHHHHHHT-TS
T ss_pred HHHHHHHhC-CC
Confidence 225666666 64
No 323
>3gl9_A Response regulator; beta-sheet, surrounded by alpha helices, BOTH sides, signaling protein; HET: BFD; 1.80A {Thermotoga maritima} SCOP: c.23.1.0 PDB: 3dgf_C 3dge_C
Probab=33.52 E-value=1.4e+02 Score=25.04 Aligned_cols=57 Identities=16% Similarity=0.051 Sum_probs=37.8
Q ss_pred hHHHHHHHHhhcceEEEEEeecCCCCCCChhhHHHHHHHHhcCCceEEEEEeC--hhhHHHHHHHHHHcC
Q 002309 180 GVSALNDKLAERRCRISYKSGIPPESGVNTGYVMDLLVKVALMESRVIVLHVS--PSLGFQVFSVAKYLG 247 (938)
Q Consensus 180 ~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~lk~~~~~viv~~~~--~~~~~~~l~~a~~~g 247 (938)
....+...+++.|..+.. . .+....+..+++..+++|++... ..+...++++.++..
T Consensus 14 ~~~~l~~~l~~~g~~v~~---~--------~~~~~al~~l~~~~~dlvllD~~~p~~~g~~~~~~l~~~~ 72 (122)
T 3gl9_A 14 LRKIVSFNLKKEGYEVIE---A--------ENGQIALEKLSEFTPDLIVLXIMMPVMDGFTVLKKLQEKE 72 (122)
T ss_dssp HHHHHHHHHHHTTCEEEE---E--------SSHHHHHHHHTTBCCSEEEECSCCSSSCHHHHHHHHHTST
T ss_pred HHHHHHHHHHHCCcEEEE---e--------CCHHHHHHHHHhcCCCEEEEeccCCCCcHHHHHHHHHhcc
Confidence 455677778888877642 1 12345666777788999998644 446777888877643
No 324
>2iks_A DNA-binding transcriptional dual regulator; escherichia coli structural genomics, PSI-2, protein structure initiative; 1.85A {Escherichia coli}
Probab=33.31 E-value=54 Score=33.10 Aligned_cols=84 Identities=10% Similarity=0.024 Sum_probs=53.7
Q ss_pred HhcCCcEEEEEEEc--CccccchHHHHHHHHhhcceEEEEEeecCCCCCCChhhHHHHHHHHhcCCceEEEEEeChhhHH
Q 002309 160 SYYGWNAVSVIFVD--NEYGRNGVSALNDKLAERRCRISYKSGIPPESGVNTGYVMDLLVKVALMESRVIVLHVSPSLGF 237 (938)
Q Consensus 160 ~~~~w~~vaii~~d--~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~lk~~~~~viv~~~~~~~~~ 237 (938)
+.-.-.+|+++..+ +.|.......+.+++++.|+.+..... . .+.......++.+...+.|.||+........
T Consensus 16 ~~~~~~~Ig~i~~~~~~~~~~~~~~gi~~~~~~~g~~~~~~~~---~--~~~~~~~~~~~~l~~~~vdgii~~~~~~~~~ 90 (293)
T 2iks_A 16 RAGRTRSIGLVIPDLENTSYTRIANYLERQARQRGYQLLIACS---E--DQPDNEMRCIEHLLQRQVDAIIVSTSLPPEH 90 (293)
T ss_dssp --CCCCEEEEEESCSCSHHHHHHHHHHHHHHHHTTCEEEEEEC---T--TCHHHHHHHHHHHHHTTCSEEEECCSSCTTC
T ss_pred hcCCCcEEEEEeCCCcCcHHHHHHHHHHHHHHHCCCEEEEEcC---C--CCHHHHHHHHHHHHHcCCCEEEEeCCCCCcH
Confidence 33344688988853 556777888999999999998764321 1 1244455667777778899998875543223
Q ss_pred HHHHHHHHcCC
Q 002309 238 QVFSVAKYLGM 248 (938)
Q Consensus 238 ~~l~~a~~~g~ 248 (938)
.+++.+.+.|.
T Consensus 91 ~~~~~~~~~~i 101 (293)
T 2iks_A 91 PFYQRWANDPF 101 (293)
T ss_dssp HHHHTTTTSSS
T ss_pred HHHHHHHhCCC
Confidence 35555555453
No 325
>1oj7_A Hypothetical oxidoreductase YQHD; structural genomics; HET: NZQ; 2.0A {Escherichia coli} SCOP: e.22.1.2
Probab=33.31 E-value=52 Score=35.49 Aligned_cols=83 Identities=13% Similarity=0.113 Sum_probs=54.9
Q ss_pred HHHHHHhcCCcEEEEEEEcCcccc-chHHHHHHHHhhcceEEEEEeecCCCCCCChhhHHHHHHHHhcCCceEEEEEeCh
Q 002309 155 VAEMVSYYGWNAVSVIFVDNEYGR-NGVSALNDKLAERRCRISYKSGIPPESGVNTGYVMDLLVKVALMESRVIVLHVSP 233 (938)
Q Consensus 155 i~~~l~~~~w~~vaii~~d~~~g~-~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~lk~~~~~viv~~~~~ 233 (938)
+.++++ ++ +++.+|+++..... ...+.+.+.++ |+++..-....++ .+.+.+...++.+++.++|+||-.+.+
T Consensus 43 l~~~l~-~g-~r~liVtd~~~~~~~g~~~~v~~~L~--g~~~~~f~~v~~~--p~~~~v~~~~~~~~~~~~D~IIavGGG 116 (408)
T 1oj7_A 43 LREQIP-HD-ARVLITYGGGSVKKTGVLDQVLDALK--GMDVLEFGGIEPN--PAYETLMNAVKLVREQKVTFLLAVGGG 116 (408)
T ss_dssp HHHHSC-TT-CEEEEEECSSHHHHHSHHHHHHHHTT--TSEEEEECCCCSS--CBHHHHHHHHHHHHHHTCCEEEEEESH
T ss_pred HHHHHh-cC-CEEEEEECCchhhhccHHHHHHHHhC--CCEEEEeCCcCCC--cCHHHHHHHHHHHHHcCCCEEEEeCCc
Confidence 455566 67 89999985543333 35677777776 7765432233333 346778888888888999999977654
Q ss_pred --hhHHHHHHHH
Q 002309 234 --SLGFQVFSVA 243 (938)
Q Consensus 234 --~~~~~~l~~a 243 (938)
-++..++...
T Consensus 117 sviD~AK~iA~~ 128 (408)
T 1oj7_A 117 SVLDGTKFIAAA 128 (408)
T ss_dssp HHHHHHHHHHHH
T ss_pred hHHHHHHHHHHH
Confidence 4666666554
No 326
>2g2c_A Putative molybdenum cofactor biosynthesis protein; structural genomics, PSI, protein structure initiative; 1.50A {Corynebacterium diphtheriae} SCOP: c.57.1.1
Probab=33.28 E-value=77 Score=29.10 Aligned_cols=63 Identities=14% Similarity=0.228 Sum_probs=41.5
Q ss_pred EEEEEEEcCcc--c---cchHHHHHHH----HhhcceEEEEEeecCCCCCCChhhHHHHHHHHhcCCceEEEEEeC
Q 002309 166 AVSVIFVDNEY--G---RNGVSALNDK----LAERRCRISYKSGIPPESGVNTGYVMDLLVKVALMESRVIVLHVS 232 (938)
Q Consensus 166 ~vaii~~d~~~--g---~~~~~~l~~~----l~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~lk~~~~~viv~~~~ 232 (938)
+++||...|+- | ......+.+. +++.|+++.....++-+ .+.+...+++..+.++|+|+..+.
T Consensus 7 ~v~Ii~~GdEl~~G~i~D~n~~~l~~~~~~~l~~~G~~v~~~~iv~Dd----~~~I~~~l~~a~~~~~DlVittGG 78 (167)
T 2g2c_A 7 KSAIIVVSDRISTGTRENKALPLLQRLMSDELQDYSYELISEVVVPEG----YDTVVEAIATALKQGARFIITAGG 78 (167)
T ss_dssp EEEEEEECHHHHHTSSCCCHHHHHHHHHCC----CEEEEEEEEEECSS----HHHHHHHHHHHHHTTCSEEEEESC
T ss_pred EEEEEEECCcccCCceeccHHHHHHHhHHhHHHHCCCEEeEEEEeCCC----HHHHHHHHHHHHhCCCCEEEECCC
Confidence 67777754432 2 2334667788 88999988776666643 778888888876656899998754
No 327
>1h3d_A ATP-phosphoribosyltransferase; hisitidine biosynthesis, glycosyltransferase; HET: AMP TLA; 2.7A {Escherichia coli} SCOP: c.94.1.1 d.58.5.3 PDB: 1q1k_A*
Probab=33.04 E-value=2.3e+02 Score=28.79 Aligned_cols=102 Identities=16% Similarity=0.074 Sum_probs=61.4
Q ss_pred CCCChHHhhhCCCCeeEEeCchHHHHHHHhcccccccccccCCHHHHHHHHhcCCCCCceEEEEecchhHHHHHhcCCcE
Q 002309 689 PINGIESLRKSDDPIGYQEGSFAEYYLSQELNISKSRLVALRTPEDYAKALKDGPGKGGVAAVVDERPYVELFLSSQCSF 768 (938)
Q Consensus 689 ~i~s~~dL~~~~~~i~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~a~i~~~~~~~~~~~~~~~l 768 (938)
.++++++|. +.+|+..-......||. +.+.. ..++...-.-|..-.+ |-.|++++-.....-+..+ +|
T Consensus 115 ~~~~~~~l~--g~RIATkyp~l~~~yf~-~~gi~-~~ii~l~GsvE~aP~~------GlADaIvDivsTG~TLraN--gL 182 (299)
T 1h3d_A 115 AWDGPLSLN--GKRIATSYPHLLKRYLD-QKGIS-FKSCLLNGSVEVAPRA------GLADAICDLVSTGATLEAN--GL 182 (299)
T ss_dssp CCCCGGGGT--TCEEEESCHHHHHHHHH-HHTCC-CEEEECSSCTTHHHHT------TSCSEEEEEESSCHHHHHT--TE
T ss_pred CCCChHHhC--CCEEEeCcHHHHHHHHH-HcCCc-EEEEECCCceeeccCC------CccceEEecccCHHHHHHC--CC
Confidence 445677776 77888877777888984 44544 3455554444444333 6678888866655544333 56
Q ss_pred EEeCccccccceEeeecCCC--cc-hhhHHHHHHhhhc
Q 002309 769 RIVGQEFTKSGWGFAFPRDS--PL-AVDLSSAILELAE 803 (938)
Q Consensus 769 ~~~~~~~~~~~~~~~~~k~s--pl-~~~i~~~il~l~e 803 (938)
..++.. ..+.-.+..++.+ +. ...++..+.+++.
T Consensus 183 ~~ie~I-~~SsA~LI~n~~s~~~~k~~~i~~l~~rl~~ 219 (299)
T 1h3d_A 183 REVEVI-YRSKACLIQRDGEMEESKQQLIDKLLTRIQG 219 (299)
T ss_dssp EEEEEE-EEECEEEEEESSCCCHHHHHHHHHHHHHHHH
T ss_pred EEeEEE-EeeEEEEEEeccccChhHHHHHHHHHHHHHH
Confidence 666444 4445566677776 22 2456666766653
No 328
>3iwt_A 178AA long hypothetical molybdenum cofactor biosy protein B; biosynthesis, structural genomics, UNKN function, NPPSFA; HET: PEG; 1.90A {Sulfolobus tokodaii}
Probab=33.00 E-value=91 Score=28.89 Aligned_cols=64 Identities=17% Similarity=0.188 Sum_probs=43.3
Q ss_pred EEEEEEEcCc-c------c---cchHHHHHHHHhhcceEEEEEeecCCCCCCChhhHHHHHHHHh-cCCceEEEEEeCh
Q 002309 166 AVSVIFVDNE-Y------G---RNGVSALNDKLAERRCRISYKSGIPPESGVNTGYVMDLLVKVA-LMESRVIVLHVSP 233 (938)
Q Consensus 166 ~vaii~~d~~-~------g---~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~lk-~~~~~viv~~~~~ 233 (938)
+++||...|. + | ...-..+.+.|++.|++|.....++-+ .+.+...+.+.. ..++|+|+..+..
T Consensus 17 ~v~iitvsd~~~~~~~~~g~i~D~ng~~L~~~L~~~G~~v~~~~iV~Dd----~~~i~~al~~~~a~~~~DlVittGG~ 91 (178)
T 3iwt_A 17 NFYVITISTSRYEKLLKKEPIVDESGDIIKQLLIENGHKIIGYSLVPDD----KIKILKAFTDALSIDEVDVIISTGGT 91 (178)
T ss_dssp EEEEEEECHHHHHHHHTTCCCCCHHHHHHHHHHHHTTCEEEEEEEECSC----HHHHHHHHHHHHTCTTCCEEEEESCC
T ss_pred EEEEEEEcCCCccccccCCCCCcchHHHHHHHHHHCCCEEEEEEEeCCC----HHHHHHHHHHHHhcCCCCEEEecCCc
Confidence 6888875431 1 1 122367889999999999877777643 667777776654 4578999987553
No 329
>4ep1_A Otcase, ornithine carbamoyltransferase; structural genomics, niaid, national institute of allergy AN infectious diseases; 3.25A {Bacillus anthracis}
Probab=32.87 E-value=3.3e+02 Score=28.18 Aligned_cols=129 Identities=13% Similarity=0.081 Sum_probs=72.6
Q ss_pred EEEEEEeeCCCcchhHHHHHHHHHHHHHhcCCCCCCCCEEEEEEccCC---CCh-HHHHHHHHHHHhcCcEEEEcCCChh
Q 002309 32 VNVGALFTLDSTIGRVAKIAIEEAVKDVNSNSSILHGTKLNITMQSSN---CSG-FIGMVEALRFMETDIVAIIGPQCST 107 (938)
Q Consensus 32 i~IG~i~~~~~~~g~~~~~a~~~Av~~iN~~~~il~g~~l~~~~~D~~---~~~-~~a~~~a~~li~~~V~aviGp~~s~ 107 (938)
-.|+.+|...+. ..+.+|+.|+.++- |..+.+...++. +.+ ...++....+. .+.++=++. .
T Consensus 71 K~la~lF~epST---RTR~SFE~A~~~LG-------g~vi~l~~~~ss~~kgEsl~DTarvLs~y~--D~IviR~~~-~- 136 (340)
T 4ep1_A 71 KILGLIFDKHST---RTRVSFEAGMVQLG-------GHGMFLNGKEMQMGRGETVSDTAKVLSHYI--DGIMIRTFS-H- 136 (340)
T ss_dssp CEEEEEESSCCH---HHHHHHHHHHHHTT-------CEEEEEESCC------CCTTHHHHHHHHHC--SEEEEECSC-H-
T ss_pred ceEEEEecCCCc---cHHHHHHHHHHHcC-------CeEEEcCcccccCCCCCCHHHHHHHHHHhC--CEEEEecCC-h-
Confidence 468888877663 67899999998872 333444333332 211 12222222221 333333432 2
Q ss_pred HHHHHHHhhccCCccEEEcccCCCCCCCCCCCceEEecCCchHHHHHHHHHH---Hhc---CCcEEEEEEEcCccccchH
Q 002309 108 VAHIVSYVSNELQVPLLSFGVTDPTLSSLQYPFFVRTTQSDSYQMTAVAEMV---SYY---GWNAVSVIFVDNEYGRNGV 181 (938)
Q Consensus 108 ~~~~va~~~~~~~iP~Is~~~~~~~l~~~~~p~~~r~~ps~~~~~~ai~~~l---~~~---~w~~vaii~~d~~~g~~~~ 181 (938)
..+..+++..+||+|... + +...| .+++++++ +++ ...+|++|.+ . ....
T Consensus 137 --~~~~~lA~~~~vPVINag--~----~~~HP------------tQaLaDl~TI~E~~G~l~glkva~vGD--~--~nva 192 (340)
T 4ep1_A 137 --ADVEELAKESSIPVINGL--T----DDHHP------------CQALADLMTIYEETNTFKGIKLAYVGD--G--NNVC 192 (340)
T ss_dssp --HHHHHHHHHCSSCEEEEE--C----SSCCH------------HHHHHHHHHHHHHHSCCTTCEEEEESC--C--CHHH
T ss_pred --hHHHHHHHhCCCCEEeCC--C----CCCCc------------HHHHHHHHHHHHHhCCCCCCEEEEECC--C--chhH
Confidence 334555667789999732 2 11122 57777763 344 4568888752 2 4477
Q ss_pred HHHHHHHhhcceEEEEE
Q 002309 182 SALNDKLAERRCRISYK 198 (938)
Q Consensus 182 ~~l~~~l~~~g~~v~~~ 198 (938)
..+..++...|.++...
T Consensus 193 ~Sl~~~~~~~G~~v~~~ 209 (340)
T 4ep1_A 193 HSLLLASAKVGMHMTVA 209 (340)
T ss_dssp HHHHHHHHHHTCEEEEE
T ss_pred HHHHHHHHHcCCEEEEE
Confidence 88888888889887654
No 330
>4edp_A ABC transporter, substrate-binding protein; clostridium PERF ATCC 13124, center for structural genomics of infectious DI csgid; 1.85A {Clostridium perfringens}
Probab=32.79 E-value=3e+02 Score=27.98 Aligned_cols=192 Identities=11% Similarity=0.031 Sum_probs=0.0
Q ss_pred HHHHHHHHhCCCCccEEEEecCCCCCCCChhHHHHhhhcce---ecEEeccEe-----eecCceeeee------------
Q 002309 496 DVFTAAVNLLPYAVPYQFVAFGDGHKNPSYTQLVDSITTGV---FDAVVGDIT-----IVTNRTKIVD------------ 555 (938)
Q Consensus 496 dll~~la~~l~f~~~~~~~~~~~~~~~~~~~~~i~~l~~g~---~D~~~~~~~-----~t~~r~~~v~------------ 555 (938)
++++.+.++.|.+++++..+ ++.+...+..+. .|++..+-. ........++
T Consensus 52 ~~~~~f~~~~gi~V~~~~~~---------~~~~~~kl~a~~~~~pDv~~~~~~~~~~~~~~g~l~~l~~~~~~~~~~~~~ 122 (351)
T 4edp_A 52 TVFEPFAKEHGVEIVLDIGN---------NSERLTKMKNNPNSQIDITYLAESFAEQGVEAGIFDKLDYSKIPNASEMNE 122 (351)
T ss_dssp HTHHHHHHHHTCCEEEEECC---------HHHHHHHHHHCTTCCCCEEEEEHHHHHHHHHHTCBCCCCGGGCGGGGGBCT
T ss_pred HHHHHHHHHHCCEEEEEeCC---------cHHHHHHHHhcCCCCCCEEEECcHHHHHHHHCCCcccCCchhCCChHHhhH
Q ss_pred ---------eccceecccEEEEEecc-CCCCCcceeeccCchhhHHHHHHHHHHHHhhhheeecccCCCCCCCccccchh
Q 002309 556 ---------FSQPYAASGLVVVVPFR-KLNTGAWAFLRPFSPLMWTVTACFFVVVGIVVWILEHRINDEFRGPPKRQVIT 625 (938)
Q Consensus 556 ---------fs~p~~~~~~~~lv~~~-~~~~~~~~~l~PF~~~vW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 625 (938)
|..|+.....++++++. .
T Consensus 123 ~~~~~~g~~y~~P~~~~~~~l~ynkd~~---------------------------------------------------- 150 (351)
T 4edp_A 123 KAKSTVEAGYGPAYTLNSIGIVVDPSAG---------------------------------------------------- 150 (351)
T ss_dssp TTHHHHHHTSSCEEEEEEEEEEECGGGC----------------------------------------------------
T ss_pred HhhccCCCeeEEEEEeeEEEEEEcCCCC----------------------------------------------------
Q ss_pred hhhHHHHHHHhhhhhhhhhhcccCccccchhHHHHHHHHHHHHHHhhhhhhhhhhhhcccccCCCCChHHhhhCCCC--e
Q 002309 626 ILWFSLSTLFFAHIAIFVILAEENTVSTLGRLVLIIWLFVVLIINSSYTASLTSILTVQQLYSPINGIESLRKSDDP--I 703 (938)
Q Consensus 626 ~~~~~~~~l~~~~~~~~~~~~~~~p~s~s~R~~~~~w~~~~lil~s~Yta~L~s~Lt~~~~~~~i~s~~dL~~~~~~--i 703 (938)
.+++|.+||.+...+ +
T Consensus 151 --------------------------------------------------------------~~p~tw~el~~~~~~g~~ 168 (351)
T 4edp_A 151 --------------------------------------------------------------IEINSWEDLWKPELKNKI 168 (351)
T ss_dssp --------------------------------------------------------------CCCCSGGGGGCGGGTTCE
T ss_pred --------------------------------------------------------------CCCCCHHHHhChHhcCCe
Q ss_pred eEEeCchH----------------------HHHHHHhcccccccccccCCHHHHHHHHhcCCCCCceEEEEecchhHHHH
Q 002309 704 GYQEGSFA----------------------EYYLSQELNISKSRLVALRTPEDYAKALKDGPGKGGVAAVVDERPYVELF 761 (938)
Q Consensus 704 ~~~~~s~~----------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~a~i~~~~~~~~~ 761 (938)
++...... ...+..-..+.........+..+..+.+.+ |++.+.+........+
T Consensus 169 ~~~~~~~~~g~~~~~~~~~~~G~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~f~~----G~~a~~~~~~~~~~~~ 244 (351)
T 4edp_A 169 AIPDITTTNGPAMVEIAAEKAGVDVKTDNGEAAFKELEALKPNVVKTYSKSSDLANMFSN----GEIVAAVASDFAFGTI 244 (351)
T ss_dssp EEECTTSTTHHHHHHHHHHHHTCCHHHHTTHHHHHHHHHHGGGEEEEECCHHHHHHHHHT----TSCSEEEEEHHHHHHH
T ss_pred eecCcccccchHHHHHHHHhcCCCCChhhHHHHHHHHHHHHHhhhcccCChHHHHHHHHc----CCEEEEecCcHHHHHH
Q ss_pred HhcCCcEEEeCc--cccccceEeeecCCCcchhhHHHHHHhhhccCcHHHHHHhh
Q 002309 762 LSSQCSFRIVGQ--EFTKSGWGFAFPRDSPLAVDLSSAILELAENGDLQRIHDKW 814 (938)
Q Consensus 762 ~~~~~~l~~~~~--~~~~~~~~~~~~k~spl~~~i~~~il~l~e~G~~~~l~~~w 814 (938)
.....++..+-+ .......+++++++++-.+.--..|..+.+......+.+..
T Consensus 245 ~~~~~~~~~~~P~~g~~~~~~~~~i~~~s~~~~~A~~fi~~l~s~e~q~~~~~~~ 299 (351)
T 4edp_A 245 SKAKPEVINVIPESGTYLNFNTININKNSKNKDLAYEFINYALSKEVQEKTAKAL 299 (351)
T ss_dssp HHHCTTCEEECCTTCCBEEEEEEEEBTTCSCHHHHHHHHHHHTSHHHHHHHHHHH
T ss_pred HhcCCCeeeeCCCCCcccceeeEEEECCCCCHHHHHHHHHHhcCHHHHHHHHHhc
No 331
>3qk7_A Transcriptional regulators; structural genomics, NEW YORK structural genomix research CO NYSGXRC, PSI-2, protein structur initiative; 2.70A {Yersinia pestis}
Probab=32.73 E-value=79 Score=31.89 Aligned_cols=78 Identities=10% Similarity=0.060 Sum_probs=51.9
Q ss_pred CcEEEEEEE------cCccccchHHHHHHHHhhcceEEEEEeecCCCCCCChhhHHHHHHHHhcCCceEEEEEeChhhHH
Q 002309 164 WNAVSVIFV------DNEYGRNGVSALNDKLAERRCRISYKSGIPPESGVNTGYVMDLLVKVALMESRVIVLHVSPSLGF 237 (938)
Q Consensus 164 w~~vaii~~------d~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~lk~~~~~viv~~~~~~~~~ 237 (938)
-+.|+++.. ++.|.......+.+++++.|..+.....-. .......++.+...+.|.||+.......
T Consensus 6 s~~Igvi~~~~~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~------~~~~~~~~~~l~~~~vdGiIi~~~~~~~- 78 (294)
T 3qk7_A 6 TDAIALAYPSRPRVLNNSTFLEMISWIGIELGKRGLDLLLIPDEP------GEKYQSLIHLVETRRVDALIVAHTQPED- 78 (294)
T ss_dssp CCEEEEEEESCSGGGSCHHHHHHHHHHHHHHHHTTCEEEEEEECT------TCCCHHHHHHHHHTCCSEEEECSCCSSC-
T ss_pred cceEEEEecCCCccccChhHHHHHHHHHHHHHHCCCEEEEEeCCC------hhhHHHHHHHHHcCCCCEEEEeCCCCCh-
Confidence 357888886 345667788899999999999876544322 1223445666667789999887654322
Q ss_pred HHHHHHHHcCC
Q 002309 238 QVFSVAKYLGM 248 (938)
Q Consensus 238 ~~l~~a~~~g~ 248 (938)
..++.+.+.|+
T Consensus 79 ~~~~~l~~~~i 89 (294)
T 3qk7_A 79 FRLQYLQKQNF 89 (294)
T ss_dssp HHHHHHHHTTC
T ss_pred HHHHHHHhCCC
Confidence 55666776665
No 332
>3grc_A Sensor protein, kinase; protein structure initiative II(PSI II), NYSGXRC, 11025B, structural genomics; 2.21A {Polaromonas SP}
Probab=32.41 E-value=1.2e+02 Score=25.96 Aligned_cols=67 Identities=12% Similarity=0.077 Sum_probs=42.8
Q ss_pred cEEEEEEEcCccccchHHHHHHHHhhcceEEEEEeecCCCCCCChhhHHHHHHHHhcCCceEEEEEeC--hhhHHHHHHH
Q 002309 165 NAVSVIFVDNEYGRNGVSALNDKLAERRCRISYKSGIPPESGVNTGYVMDLLVKVALMESRVIVLHVS--PSLGFQVFSV 242 (938)
Q Consensus 165 ~~vaii~~d~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~lk~~~~~viv~~~~--~~~~~~~l~~ 242 (938)
.+|.++ +|+. .....+.+.+++.|..+.. . .+....+..+++..+++|++... ..+...++++
T Consensus 7 ~~iLiv-dd~~---~~~~~l~~~l~~~g~~v~~---~--------~~~~~a~~~l~~~~~dlvi~d~~l~~~~g~~~~~~ 71 (140)
T 3grc_A 7 PRILIC-EDDP---DIARLLNLMLEKGGFDSDM---V--------HSAAQALEQVARRPYAAMTVDLNLPDQDGVSLIRA 71 (140)
T ss_dssp SEEEEE-CSCH---HHHHHHHHHHHHTTCEEEE---E--------CSHHHHHHHHHHSCCSEEEECSCCSSSCHHHHHHH
T ss_pred CCEEEE-cCCH---HHHHHHHHHHHHCCCeEEE---E--------CCHHHHHHHHHhCCCCEEEEeCCCCCCCHHHHHHH
Confidence 455554 3332 3456677788888877532 1 12345566677788999999644 4467778888
Q ss_pred HHHc
Q 002309 243 AKYL 246 (938)
Q Consensus 243 a~~~ 246 (938)
.++.
T Consensus 72 l~~~ 75 (140)
T 3grc_A 72 LRRD 75 (140)
T ss_dssp HHTS
T ss_pred HHhC
Confidence 8763
No 333
>1y80_A Predicted cobalamin binding protein; corrinoid, factor IIIM, methyl transferase, structural genomics, PSI, protein structure initiative; HET: B1M; 1.70A {Moorella thermoacetica}
Probab=31.56 E-value=2e+02 Score=27.30 Aligned_cols=86 Identities=7% Similarity=-0.059 Sum_probs=56.4
Q ss_pred cEEEEEEEcCccccchHHHHHHHHhhcceEEEEEeecCCCCCCChhhHHHHHHHHhcCCceEEEEEeCh----hhHHHHH
Q 002309 165 NAVSVIFVDNEYGRNGVSALNDKLAERRCRISYKSGIPPESGVNTGYVMDLLVKVALMESRVIVLHVSP----SLGFQVF 240 (938)
Q Consensus 165 ~~vaii~~d~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~lk~~~~~viv~~~~~----~~~~~~l 240 (938)
.+|.+.....+.-.-+...+...++..|++|.+-.. . ......+..+++.++++|.+.+.. .....++
T Consensus 89 ~~vll~~~~gd~H~iG~~~va~~l~~~G~~v~~LG~---~-----vp~~~l~~~~~~~~~d~v~lS~~~~~~~~~~~~~i 160 (210)
T 1y80_A 89 GKIVLGTVKGDLHDIGKNLVAMMLESGGFTVYNLGV---D-----IEPGKFVEAVKKYQPDIVGMSALLTTTMMNMKSTI 160 (210)
T ss_dssp CEEEEEEBTTCCCCHHHHHHHHHHHHTTCEEEECCS---S-----BCHHHHHHHHHHHCCSEEEEECCSGGGTHHHHHHH
T ss_pred CEEEEEeCCCcccHHHHHHHHHHHHHCCCEEEECCC---C-----CCHHHHHHHHHHcCCCEEEEeccccccHHHHHHHH
Confidence 466666666666666778888899999999875321 1 123445566666789999997653 3466677
Q ss_pred HHHHHcCCCCCCeEEEEe
Q 002309 241 SVAKYLGMMGNGYVWIAT 258 (938)
Q Consensus 241 ~~a~~~g~~~~~~~wi~~ 258 (938)
+..++.|....-.++++.
T Consensus 161 ~~l~~~~~~~~~~v~vGG 178 (210)
T 1y80_A 161 DALIAAGLRDRVKVIVGG 178 (210)
T ss_dssp HHHHHTTCGGGCEEEEES
T ss_pred HHHHhcCCCCCCeEEEEC
Confidence 888877764333455553
No 334
>3gv0_A Transcriptional regulator, LACI family; transcription regulator, PSI-II, structural genomics structure initiative; 2.35A {Agrobacterium tumefaciens str}
Probab=31.30 E-value=82 Score=31.61 Aligned_cols=80 Identities=6% Similarity=0.038 Sum_probs=51.4
Q ss_pred CCcEEEEEEEc--C--ccccchHHHHHHHHhhcceEEEEEeecCCCCCCChhhHHHHHHHHhcCCceEEEEEeChhhHHH
Q 002309 163 GWNAVSVIFVD--N--EYGRNGVSALNDKLAERRCRISYKSGIPPESGVNTGYVMDLLVKVALMESRVIVLHVSPSLGFQ 238 (938)
Q Consensus 163 ~w~~vaii~~d--~--~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~lk~~~~~viv~~~~~~~~~~ 238 (938)
.-+.|+++..+ + .|.......+.+++++.|..+.....- .+.......+..+...+.|.||+...... ..
T Consensus 7 ~s~~Igvv~~~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~-----~~~~~~~~~~~~l~~~~vdgiIi~~~~~~-~~ 80 (288)
T 3gv0_A 7 KTNVIALVLSVDEELMGFTSQMVFGITEVLSTTQYHLVVTPHI-----HAKDSMVPIRYILETGSADGVIISKIEPN-DP 80 (288)
T ss_dssp CCCEEEEECBCCCCSSCHHHHHHHHHHHHHTTSSCEEEECCBS-----SGGGTTHHHHHHHHHTCCSEEEEESCCTT-CH
T ss_pred CCCEEEEEecCCccccHHHHHHHHHHHHHHHHcCCEEEEecCC-----cchhHHHHHHHHHHcCCccEEEEecCCCC-cH
Confidence 44678888864 2 677788889999999999987643211 11223344455566678999988754322 24
Q ss_pred HHHHHHHcCC
Q 002309 239 VFSVAKYLGM 248 (938)
Q Consensus 239 ~l~~a~~~g~ 248 (938)
.++.+.+.|+
T Consensus 81 ~~~~l~~~~i 90 (288)
T 3gv0_A 81 RVRFMTERNM 90 (288)
T ss_dssp HHHHHHHTTC
T ss_pred HHHHHhhCCC
Confidence 5666776665
No 335
>3l4e_A Uncharacterized peptidase LMO0363; hypothetical protein LMO0363, csgid, similar to peptidase E, hydrolase, protease, serine protease; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=31.25 E-value=1.2e+02 Score=29.01 Aligned_cols=98 Identities=16% Similarity=0.083 Sum_probs=54.3
Q ss_pred HHHHHHHHHhcCCcEEEEEEEcCc--cccchHHHHHHHHhhcceEEEEEeecCCCCCCChhhHHHHHHHHhcCCceEEEE
Q 002309 152 MTAVAEMVSYYGWNAVSVIFVDNE--YGRNGVSALNDKLAERRCRISYKSGIPPESGVNTGYVMDLLVKVALMESRVIVL 229 (938)
Q Consensus 152 ~~ai~~~l~~~~w~~vaii~~d~~--~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~lk~~~~~viv~ 229 (938)
...+.+++....-++|++|-.... -.......+.+++++.|.++.... +.. .+.+++.. .++ ++|.|++
T Consensus 15 ~~~~~~f~~~~~~~~i~~Ip~As~~~~~~~~~~s~~~a~~~lG~~v~~~~-i~~---~~~~~~~~---~l~--~ad~I~l 85 (206)
T 3l4e_A 15 VPLFTEFESNLQGKTVTFIPTASTVEEVTFYVEAGKKALESLGLLVEELD-IAT---ESLGEITT---KLR--KNDFIYV 85 (206)
T ss_dssp HHHHHHHSCCCTTCEEEEECGGGGGCSCCHHHHHHHHHHHHTTCEEEECC-TTT---SCHHHHHH---HHH--HSSEEEE
T ss_pred HHHHHHHHHHcCCCEEEEECCCCCCCCHHHHHHHHHHHHHHcCCeEEEEE-ecC---CChHHHHH---HHH--hCCEEEE
Confidence 344555665666689998852211 113467888999999998765321 111 12344433 343 3788887
Q ss_pred EeChhhHHHHHHHHHHcCCCC-------CCeEEEEeCc
Q 002309 230 HVSPSLGFQVFSVAKYLGMMG-------NGYVWIATDW 260 (938)
Q Consensus 230 ~~~~~~~~~~l~~a~~~g~~~-------~~~~wi~~~~ 260 (938)
.+ .+...+++.+++.|+.. .+..++++..
T Consensus 86 ~G--G~~~~l~~~L~~~gl~~~l~~~~~~G~p~~G~sA 121 (206)
T 3l4e_A 86 TG--GNTFFLLQELKRTGADKLILEEIAAGKLYIGESA 121 (206)
T ss_dssp CC--SCHHHHHHHHHHHTHHHHHHHHHHTTCEEEEETH
T ss_pred CC--CCHHHHHHHHHHCChHHHHHHHHHcCCeEEEECH
Confidence 65 33335555555555421 2446677653
No 336
>4es6_A Uroporphyrinogen-III synthase; heme-biosynthesis, cytoplasmi; 2.22A {Pseudomonas aeruginosa}
Probab=31.17 E-value=44 Score=33.27 Aligned_cols=86 Identities=14% Similarity=0.096 Sum_probs=51.9
Q ss_pred HHHHHHHHHH-----hcCCcEEEEEEEcCccccchHHHHHHHHhhcceEEEEEeecCCCCC-CChhhHHHHHHHHhcCCc
Q 002309 151 QMTAVAEMVS-----YYGWNAVSVIFVDNEYGRNGVSALNDKLAERRCRISYKSGIPPESG-VNTGYVMDLLVKVALMES 224 (938)
Q Consensus 151 ~~~ai~~~l~-----~~~w~~vaii~~d~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~-~~~~d~~~~l~~lk~~~~ 224 (938)
.++.+++.+. ...-++|.++..+ .....+.+.|++.|..|.....|..... ....++ ...+.....
T Consensus 115 ~~e~L~~~l~~~~~~~~~~~~vL~~rg~-----~~r~~L~~~L~~~G~~v~~~~vY~~~~~~~~~~~~---~~~l~~~~~ 186 (254)
T 4es6_A 115 DSEALLALPAFQDSLRVHDPKVLIMRGE-----GGREFLAERLRGQGVQVDYLPLYRRRAPDYPAGEL---LARVRAERL 186 (254)
T ss_dssp SHHHHHTCHHHHHHTCSSSCEEEEEECS-----SCCCHHHHHHHHTTCEEEEEECEEEECCCCCTTHH---HHHHHHTTC
T ss_pred CHHHHHHhHhhcccccCCCCEEEEEcCC-----ccHHHHHHHHHHCCCEEEEEeEEEeeCCCCCHHHH---HHHHHhCCC
Confidence 3677777664 4566788777633 2345677889999998765544432200 112233 333444566
Q ss_pred eEEEEEeChhhHHHHHHHHHH
Q 002309 225 RVIVLHVSPSLGFQVFSVAKY 245 (938)
Q Consensus 225 ~viv~~~~~~~~~~~l~~a~~ 245 (938)
++|+ +.++..+..+++.+.+
T Consensus 187 d~v~-ftS~s~v~~~~~~~~~ 206 (254)
T 4es6_A 187 NGLV-VSSGQGLQNLYQLAAA 206 (254)
T ss_dssp CEEE-CCSHHHHHHHHHHHGG
T ss_pred CEEE-EcCHHHHHHHHHHhhH
Confidence 7654 6777888888877654
No 337
>3gt7_A Sensor protein; structural genomics, signal receiver domain, kinase, PSI-2, protein structure initiative; 2.30A {Syntrophus aciditrophicus SB}
Probab=31.16 E-value=1.7e+02 Score=25.64 Aligned_cols=57 Identities=14% Similarity=0.084 Sum_probs=39.9
Q ss_pred hHHHHHHHHhhcceEEEEEeecCCCCCCChhhHHHHHHHHhcCCceEEEEEeC--hhhHHHHHHHHHHcC
Q 002309 180 GVSALNDKLAERRCRISYKSGIPPESGVNTGYVMDLLVKVALMESRVIVLHVS--PSLGFQVFSVAKYLG 247 (938)
Q Consensus 180 ~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~lk~~~~~viv~~~~--~~~~~~~l~~a~~~g 247 (938)
....+.+.+++.|..+.. . .+....+..+++..+++|++... ..+...+++..++..
T Consensus 19 ~~~~l~~~L~~~g~~v~~---~--------~~~~~al~~l~~~~~dlii~D~~l~~~~g~~~~~~lr~~~ 77 (154)
T 3gt7_A 19 QAEHLKHILEETGYQTEH---V--------RNGREAVRFLSLTRPDLIISDVLMPEMDGYALCRWLKGQP 77 (154)
T ss_dssp HHHHHHHHHHTTTCEEEE---E--------SSHHHHHHHHTTCCCSEEEEESCCSSSCHHHHHHHHHHST
T ss_pred HHHHHHHHHHHCCCEEEE---e--------CCHHHHHHHHHhCCCCEEEEeCCCCCCCHHHHHHHHHhCC
Confidence 566778888888876542 1 13445667777788999999754 346777888888754
No 338
>3lr1_A Tungstate ABC transporter, periplasmic tungstate- binding protein; the tungstate ABC transporter, structural genomics, PSI, MCSG; 1.80A {Geobacter sulfurreducens}
Probab=30.89 E-value=29 Score=34.17 Aligned_cols=75 Identities=12% Similarity=-0.013 Sum_probs=50.5
Q ss_pred EeeeHHHHHHHHHhCCCCccEEEEecCCCCCCCChhHHHHhhhcceecEEeccEeeecCce---eeeeeccceecccEEE
Q 002309 491 QGFCIDVFTAAVNLLPYAVPYQFVAFGDGHKNPSYTQLVDSITTGVFDAVVGDITIVTNRT---KIVDFSQPYAASGLVV 567 (938)
Q Consensus 491 ~G~~~dll~~la~~l~f~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~D~~~~~~~~t~~r~---~~v~fs~p~~~~~~~~ 567 (938)
.|+.-+|+..+.++.|.++++.+ +.-..++.++.+|.+|+++..-....+.. ....-..|++...+++
T Consensus 18 ~~ll~~L~~~Fek~~gv~V~~~~---------~gSg~ll~qi~~G~aDV~isa~~~~~~~l~~~g~~~~~~~~~~n~lVl 88 (236)
T 3lr1_A 18 SGLLKVLLPPFEKKNNVKVDVIA---------VGTGQALKLGEAGDVDVVFVHARKLEDKFVADGFGVNRKDVMYNDFVI 88 (236)
T ss_dssp HCHHHHHHHHHHHHHTCEEEEEE---------ECHHHHHHHHHTTSCSEEEECCHHHHHHHHHTTSEEEEEEEEECCEEE
T ss_pred hHHHHHHHHHHHHHhCCeEEEEE---------cChHHHHHHHhcCCCCEEeecCchhHHHHHhcCCCcceEEEEcCcEEE
Confidence 46677888888888776544443 33667899999999999876433222211 1112245899999999
Q ss_pred EEeccCC
Q 002309 568 VVPFRKL 574 (938)
Q Consensus 568 lv~~~~~ 574 (938)
++|+.++
T Consensus 89 V~P~~~P 95 (236)
T 3lr1_A 89 VGPKNDP 95 (236)
T ss_dssp EECTTCT
T ss_pred EEECCCh
Confidence 9998763
No 339
>2rgy_A Transcriptional regulator, LACI family; 11011J, NYSGXRC, transctiptional regulator, SUG binding protein, structural genomics, PSI-2; 2.05A {Burkholderia phymatum}
Probab=30.87 E-value=82 Score=31.65 Aligned_cols=79 Identities=4% Similarity=-0.128 Sum_probs=51.9
Q ss_pred CcEEEEEEE--cCccccchHHHHHHHHhhcceEEEEEeecCCCCCCChhhHHH---HHHHHhcCCceEEEEEeChhhHHH
Q 002309 164 WNAVSVIFV--DNEYGRNGVSALNDKLAERRCRISYKSGIPPESGVNTGYVMD---LLVKVALMESRVIVLHVSPSLGFQ 238 (938)
Q Consensus 164 w~~vaii~~--d~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~d~~~---~l~~lk~~~~~viv~~~~~~~~~~ 238 (938)
-..|+++.. ++.|.......+.+++++.|..+.... .. .+...... .++.+...+.|.||+...... ..
T Consensus 8 ~~~Ig~i~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~---~~--~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~~-~~ 81 (290)
T 2rgy_A 8 LGIIGLFVPTFFGSYYGTILKQTDLELRAVHRHVVVAT---GC--GESTPREQALEAVRFLIGRDCDGVVVISHDLH-DE 81 (290)
T ss_dssp CCEEEEECSCSCSHHHHHHHHHHHHHHHHTTCEEEEEC---CC--SSSCHHHHHHHHHHHHHHTTCSEEEECCSSSC-HH
T ss_pred CCeEEEEeCCCCCchHHHHHHHHHHHHHHCCCEEEEEe---CC--CchhhhhhHHHHHHHHHhcCccEEEEecCCCC-HH
Confidence 357888875 355777788899999999999876432 11 11233344 677777788999998754433 34
Q ss_pred HHHHHHHcCC
Q 002309 239 VFSVAKYLGM 248 (938)
Q Consensus 239 ~l~~a~~~g~ 248 (938)
.++.+.+.|+
T Consensus 82 ~~~~l~~~~i 91 (290)
T 2rgy_A 82 DLDELHRMHP 91 (290)
T ss_dssp HHHHHHHHCS
T ss_pred HHHHHhhcCC
Confidence 5566666564
No 340
>1jye_A Lactose operon repressor; gene regulation, protein stability, protein DNA-binding, transcription; 1.70A {Escherichia coli} SCOP: c.93.1.1 PDB: 1lbi_A 1lbg_A* 1lbh_A 1jyf_A 3edc_A 1efa_A* 1jwl_A* 2pe5_A* 1tlf_A* 2p9h_A* 2paf_A* 1cjg_A* 1l1m_A 1osl_A 2kei_A* 2kej_A* 2kek_A* 2bjc_A 1lqc_A 1lcc_A* ...
Probab=30.84 E-value=1.2e+02 Score=31.51 Aligned_cols=82 Identities=5% Similarity=-0.101 Sum_probs=49.5
Q ss_pred CCcEEEEEEEc--CccccchHHHHHHHHhhcceEEEEEeecCCCCCCChhhHHHHHHHHhcCCceEEEEEeChhhHHHHH
Q 002309 163 GWNAVSVIFVD--NEYGRNGVSALNDKLAERRCRISYKSGIPPESGVNTGYVMDLLVKVALMESRVIVLHVSPSLGFQVF 240 (938)
Q Consensus 163 ~w~~vaii~~d--~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~lk~~~~~viv~~~~~~~~~~~l 240 (938)
.-..|+++..+ +.|.......+.+.+++.|+.+..... . . .........++.+...+.|.||+.........+.
T Consensus 60 ~~~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~-~-~--~~~~~~~~~l~~l~~~~vdGiIi~~~~~~~~~~~ 135 (349)
T 1jye_A 60 QSLLIGVATSSLALHAPSQIVAAILSRADQLGASVVVSMV-E-R--SGVEACKTAVHNLLAQRVSGLIINYPLDDQDAIA 135 (349)
T ss_dssp --CEEEEEESCTTSHHHHHHHHHHHHHHHHTTCEEEEEEC-C-S--SSHHHHHHHHHHHHTTTCSCEEEESCCCHHHHHH
T ss_pred CCCEEEEEeCCCCcccHHHHHHHHHHHHHHcCCEEEEEeC-C-C--CcHHHHHHHHHHHHHCCCCEEEEecCCCChhHHH
Confidence 34578888854 456667788899999999998765321 1 1 1123445667777778899988874322222233
Q ss_pred HHHHHcCC
Q 002309 241 SVAKYLGM 248 (938)
Q Consensus 241 ~~a~~~g~ 248 (938)
..+.+.|+
T Consensus 136 ~~~~~~~i 143 (349)
T 1jye_A 136 VEAACTNV 143 (349)
T ss_dssp HHHHTTTS
T ss_pred HHHhhCCC
Confidence 34444443
No 341
>2vpn_A Periplasmic substrate binding protein; ectoine, hydroxyectoine, trap-transporter, periplasmic binding protein, transport; HET: 4CS; 1.55A {Halomonas elongata} PDB: 2vpo_A* 3gyy_A
Probab=30.79 E-value=53 Score=33.95 Aligned_cols=101 Identities=11% Similarity=0.029 Sum_probs=60.2
Q ss_pred CCCCChHHhhhCCCCeeEEeCchHHHHHHHhcccccccccccCCHHHHHHHHhcCCCCCceEEEEecchhHHHH-HhcCC
Q 002309 688 SPINGIESLRKSDDPIGYQEGSFAEYYLSQELNISKSRLVALRTPEDYAKALKDGPGKGGVAAVVDERPYVELF-LSSQC 766 (938)
Q Consensus 688 ~~i~s~~dL~~~~~~i~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~a~i~~~~~~~~~-~~~~~ 766 (938)
.+|++++||. |++|.+..+......+ +..+.. .+++ ...|...+|++ |.+|+.....+...-. ..+-.
T Consensus 130 ~pI~s~~Dlk--G~KiR~~~~~~~~~~~-~~lGa~---pv~m-~~~Evy~ALq~----G~VDg~~~~~~~~~~~~~~ev~ 198 (316)
T 2vpn_A 130 EPITSPEDFD--NKKIRTMTNPLLAETY-KAFGAT---PTPL-PWGEVYGGLQT----GIIDGQENPIFWIESGGLYEVS 198 (316)
T ss_dssp SCCCSGGGGT--TCEEEECSCHHHHHHH-HHHTCE---EEEC-CGGGHHHHHHH----TSCSEEEEEHHHHHHTTGGGTC
T ss_pred CCCCChHHhC--CCEEEeCCCHHHHHHH-HHcCCe---eeec-CHHHHHHHHHc----CCcceeeCCHHHHHhcCHHHhh
Confidence 6899999999 9999887665555666 445533 2222 56788999999 8999988664433211 12334
Q ss_pred cEEEeCccccccceEeeecCCCc--chhhHHHHHHh
Q 002309 767 SFRIVGQEFTKSGWGFAFPRDSP--LAVDLSSAILE 800 (938)
Q Consensus 767 ~l~~~~~~~~~~~~~~~~~k~sp--l~~~i~~~il~ 800 (938)
++...... ......+++++..- |-+.....|.+
T Consensus 199 ~y~~~~~~-~~~~~~~~~n~~~~~~L~~~~q~~l~~ 233 (316)
T 2vpn_A 199 PNLTFTSH-GWFTTAMMANQDFYEGLSEEDQQLVQD 233 (316)
T ss_dssp CEEEECCC-CEEEEEEEEEHHHHHHSCHHHHHHHHH
T ss_pred hhheeccc-cccceEEEEcHHHHhcCCHHHHHHHHH
Confidence 55444332 22355667776521 44444444433
No 342
>3brs_A Periplasmic binding protein/LACI transcriptional; structural genomics, protein structure initiative; 2.00A {Clostridium phytofermentans}
Probab=30.08 E-value=38 Score=34.12 Aligned_cols=81 Identities=12% Similarity=0.044 Sum_probs=52.0
Q ss_pred cEEEEEEEc----CccccchHHHHHHHHhhcceEEEEEeecCCCCCCChhhHHHHHHHHhcCCceEEEEEeChhh-HHHH
Q 002309 165 NAVSVIFVD----NEYGRNGVSALNDKLAERRCRISYKSGIPPESGVNTGYVMDLLVKVALMESRVIVLHVSPSL-GFQV 239 (938)
Q Consensus 165 ~~vaii~~d----~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~lk~~~~~viv~~~~~~~-~~~~ 239 (938)
++|+++..+ +.|.......+.+++++.|+.+.....-. . .+.......++.+...+.+.||+...... ....
T Consensus 6 ~~Ig~v~~~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~-~--~~~~~~~~~~~~l~~~~vdgii~~~~~~~~~~~~ 82 (289)
T 3brs_A 6 YYMICIPKVLDDSSDFWSVLVEGAQMAAKEYEIKLEFMAPEK-E--EDYLVQNELIEEAIKRKPDVILLAAADYEKTYDA 82 (289)
T ss_dssp CEEEEECSCCCSSSHHHHHHHHHHHHHHHHHTCEEEECCCSS-T--TCHHHHHHHHHHHHHTCCSEEEECCSCTTTTHHH
T ss_pred cEEEEEeCCCCCCchHHHHHHHHHHHHHHHcCCEEEEecCCC-C--CCHHHHHHHHHHHHHhCCCEEEEeCCChHHhHHH
Confidence 468887753 56777788899999999998876422110 1 22344556677777788999888754433 2355
Q ss_pred HHHHHHcCC
Q 002309 240 FSVAKYLGM 248 (938)
Q Consensus 240 l~~a~~~g~ 248 (938)
++.+.+.|.
T Consensus 83 ~~~~~~~~i 91 (289)
T 3brs_A 83 AKEIKDAGI 91 (289)
T ss_dssp HTTTGGGTC
T ss_pred HHHHHHCCC
Confidence 666655553
No 343
>1pvv_A Otcase, ornithine carbamoyltransferase; dodecamer; 1.87A {Pyrococcus furiosus} SCOP: c.78.1.1 c.78.1.1 PDB: 1a1s_A
Probab=29.95 E-value=4.6e+02 Score=26.74 Aligned_cols=132 Identities=14% Similarity=0.094 Sum_probs=77.9
Q ss_pred eEEEEEEeeCCCcchhHHHHHHHHHHHHHhcCCCCCCCCEEEEEEccCCCChHHHHHHHHHHHhc--CcEEEEcCCChhH
Q 002309 31 VVNVGALFTLDSTIGRVAKIAIEEAVKDVNSNSSILHGTKLNITMQSSNCSGFIGMVEALRFMET--DIVAIIGPQCSTV 108 (938)
Q Consensus 31 ~i~IG~i~~~~~~~g~~~~~a~~~Av~~iN~~~~il~g~~l~~~~~D~~~~~~~a~~~a~~li~~--~V~aviGp~~s~~ 108 (938)
.-.|+.+|-..+. ..+.+|+.|+.++ .|..+.+...++.-.-...+.-..+.++. .+.++=.+. .
T Consensus 46 gk~la~lF~e~ST---RTR~SFe~A~~~L-------Gg~~i~l~~~~ss~~kgEsl~DTarvls~~~D~iviR~~~-~-- 112 (315)
T 1pvv_A 46 GKTLAMIFQKPST---RTRVSFEVAMAHL-------GGHALYLNAQDLQLRRGETIADTARVLSRYVDAIMARVYD-H-- 112 (315)
T ss_dssp TCEEEEEESSCCS---HHHHHHHHHHHHT-------TSEEEEEEGGGSTTTTTCCHHHHHHHHTTTCSEEEEECSS-H--
T ss_pred CCEEEEEecCCCc---chHHHHHHHHHHc-------CCeEEEECCccccCCCCcCHHHHHHHHHHhCcEEEEecCc-h--
Confidence 3567888876653 6799999999987 24555555555443222233333344444 333333432 2
Q ss_pred HHHHHHhhccCCccEEEcccCCCCCCCCCCCceEEecCCchHHHHHHHHHH---Hhc---CCcEEEEEEEcCccccchHH
Q 002309 109 AHIVSYVSNELQVPLLSFGVTDPTLSSLQYPFFVRTTQSDSYQMTAVAEMV---SYY---GWNAVSVIFVDNEYGRNGVS 182 (938)
Q Consensus 109 ~~~va~~~~~~~iP~Is~~~~~~~l~~~~~p~~~r~~ps~~~~~~ai~~~l---~~~---~w~~vaii~~d~~~g~~~~~ 182 (938)
..+..+++..++|+|.. .+ +...| .+++++++ +++ .-.+|+++.+ . .....
T Consensus 113 -~~~~~lA~~~~vPVINa--~~----~~~HP------------tQaLaDl~Ti~e~~g~l~gl~va~vGD--~--~rva~ 169 (315)
T 1pvv_A 113 -KDVEDLAKYATVPVING--LS----DFSHP------------CQALADYMTIWEKKGTIKGVKVVYVGD--G--NNVAH 169 (315)
T ss_dssp -HHHHHHHHHCSSCEEEE--EC----SSCCH------------HHHHHHHHHHHHHHSCCTTCEEEEESC--C--CHHHH
T ss_pred -HHHHHHHHhCCCCEEcC--CC----CCCCc------------HHHHHHHHHHHHHhCCcCCcEEEEECC--C--cchHH
Confidence 33444556668999973 22 11222 57777774 344 3457777653 2 45778
Q ss_pred HHHHHHhhcceEEEEE
Q 002309 183 ALNDKLAERRCRISYK 198 (938)
Q Consensus 183 ~l~~~l~~~g~~v~~~ 198 (938)
.+..++...|.+|...
T Consensus 170 Sl~~~~~~~g~~v~~~ 185 (315)
T 1pvv_A 170 SLMIAGTKLGADVVVA 185 (315)
T ss_dssp HHHHHHHHTTCEEEEE
T ss_pred HHHHHHHHCCCEEEEE
Confidence 8888888899887654
No 344
>3fni_A Putative diflavin flavoprotein A 3; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium; 2.30A {Nostoc SP} PDB: 2klb_A
Probab=29.90 E-value=1.2e+02 Score=27.44 Aligned_cols=84 Identities=15% Similarity=0.124 Sum_probs=48.1
Q ss_pred cEEEEEEEcCcccc--chHHHHHHHHhhcceEEEEEeecCCCCCCChh-hHHHHHHHHhcCCceEEEEEeChh--h--HH
Q 002309 165 NAVSVIFVDNEYGR--NGVSALNDKLAERRCRISYKSGIPPESGVNTG-YVMDLLVKVALMESRVIVLHVSPS--L--GF 237 (938)
Q Consensus 165 ~~vaii~~d~~~g~--~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~-d~~~~l~~lk~~~~~viv~~~~~~--~--~~ 237 (938)
+++.|+|. +.+|. ..++.+.+.+.+.|+.+... ... .. +....+..+. +.|.||+.++.- . ..
T Consensus 5 ~kv~IvY~-S~~GnT~~iA~~ia~~l~~~g~~v~~~---~~~----~~~~~~~~~~~~~--~~d~ii~Gspty~g~~p~~ 74 (159)
T 3fni_A 5 TSIGVFYV-SEYGYSDRLAQAIINGITKTGVGVDVV---DLG----AAVDLQELRELVG--RCTGLVIGMSPAASAASIQ 74 (159)
T ss_dssp CEEEEEEC-TTSTTHHHHHHHHHHHHHHTTCEEEEE---ESS----SCCCHHHHHHHHH--TEEEEEEECCBTTSHHHHH
T ss_pred CEEEEEEE-CCChHHHHHHHHHHHHHHHCCCeEEEE---ECc----CcCCHHHHHHHHH--hCCEEEEEcCcCCCCccHH
Confidence 58899993 33444 56788888898888875432 221 22 3444555554 478888876532 1 13
Q ss_pred HHHHHHHHcCCCCCCeEEEEe
Q 002309 238 QVFSVAKYLGMMGNGYVWIAT 258 (938)
Q Consensus 238 ~~l~~a~~~g~~~~~~~wi~~ 258 (938)
.++.......+.+.....+.+
T Consensus 75 ~~l~~l~~~~~~~k~va~fgs 95 (159)
T 3fni_A 75 GALSTILGSVNEKQAVGIFET 95 (159)
T ss_dssp HHHHHHHHHCCTTSEEEEECC
T ss_pred HHHHHHHhhcccCCEEEEEEc
Confidence 566666555544333333333
No 345
>3ezx_A MMCP 1, monomethylamine corrinoid protein 1; N terminal all helical bundle C terminal rossmann fold, cobalt, metal-binding; HET: HCB; 2.56A {Methanosarcina barkeri}
Probab=29.77 E-value=2.4e+02 Score=27.06 Aligned_cols=86 Identities=6% Similarity=-0.037 Sum_probs=56.8
Q ss_pred cEEEEEEEcCccccchHHHHHHHHhhcceEEEEEeecCCCCCCChhhHHHHHHHHhcCCceEEEE--EeCh----hhHHH
Q 002309 165 NAVSVIFVDNEYGRNGVSALNDKLAERRCRISYKSGIPPESGVNTGYVMDLLVKVALMESRVIVL--HVSP----SLGFQ 238 (938)
Q Consensus 165 ~~vaii~~d~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~lk~~~~~viv~--~~~~----~~~~~ 238 (938)
.+|.+-....+.-.-+..-+...++..|++|.+-. .+ ......+..+++.++++|.+ .+.. .....
T Consensus 93 ~~vll~~v~gd~HdiG~~iv~~~l~~~G~~Vi~LG---~~-----vp~e~iv~~~~~~~~d~v~l~~S~l~~~~~~~~~~ 164 (215)
T 3ezx_A 93 GLAITFVAEGDIHDIGHRLVTTMLGANGFQIVDLG---VD-----VLNENVVEEAAKHKGEKVLLVGSALMTTSMLGQKD 164 (215)
T ss_dssp CEEEEEECTTCCCCHHHHHHHHHHHHTSCEEEECC---SS-----CCHHHHHHHHHHTTTSCEEEEEECSSHHHHTHHHH
T ss_pred CeEEEEeCCCChhHHHHHHHHHHHHHCCCeEEEcC---CC-----CCHHHHHHHHHHcCCCEEEEEchhcccCcHHHHHH
Confidence 35555555555556677888889999999987532 21 12345667777789999999 5443 24566
Q ss_pred HHHHHHHcCCCCCCeEEEEe
Q 002309 239 VFSVAKYLGMMGNGYVWIAT 258 (938)
Q Consensus 239 ~l~~a~~~g~~~~~~~wi~~ 258 (938)
++++.++.|+...-.+|++.
T Consensus 165 ~i~~l~~~~~~~~v~v~vGG 184 (215)
T 3ezx_A 165 LMDRLNEEKLRDSVKCMFGG 184 (215)
T ss_dssp HHHHHHHTTCGGGSEEEEES
T ss_pred HHHHHHHcCCCCCCEEEEEC
Confidence 77888888864333466664
No 346
>3rvy_A ION transport protein; tetrameric ION channel, voltage-gated sodium-selective ION C membrane, metal transport; HET: PX4; 2.70A {Arcobacter butzleri} PDB: 3rvz_A* 4ekw_A* 3rw0_A*
Probab=29.76 E-value=35 Score=34.70 Aligned_cols=60 Identities=3% Similarity=-0.004 Sum_probs=41.7
Q ss_pred cccchhhhhHHHHHHHhhhhhhhhhhc-cc-Cccc----cchhHHHHHHHHHHHHHHhhhhhhhhhhhhccc
Q 002309 620 KRQVITILWFSLSTLFFAHIAIFVILA-EE-NTVS----TLGRLVLIIWLFVVLIINSSYTASLTSILTVQQ 685 (938)
Q Consensus 620 ~~~~~~~~~~~~~~l~~~~~~~~~~~~-~~-~p~s----~s~R~~~~~w~~~~lil~s~Yta~L~s~Lt~~~ 685 (938)
-.++.+++|+.+.++...|. + +. .|.. .+.+++..+..+.++++.+.++|-+.+.+....
T Consensus 178 F~s~~~a~~~~~~~~T~~g~------~~di~~p~~~~~~~~~~~f~~~~~i~~~~~lnl~~aii~~~f~~~~ 243 (285)
T 3rvy_A 178 FGTLGESFYTLFQVMTLESW------SMGIVRPLMEVYPYAWVFFIPFIFVVTFVMINLVVAICVDAMAILN 243 (285)
T ss_dssp HSSHHHHHHHHHHHHTTTTC------CCCCHHHHHTTCTTTHHHHHHHHHHHHHHHHHHHHHHHHHHC----
T ss_pred cCCHHHHHHHHHHHHHhCCC------cHHHHHHHHHcCChHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35788999999999988772 2 11 1322 234777777777889999999999999886544
No 347
>3tsm_A IGPS, indole-3-glycerol phosphate synthase; structural genomics, ssgcid, seattle structural GE center for infectious disease, lyase; 2.15A {Brucella melitensis} SCOP: c.1.2.0
Probab=29.65 E-value=2.8e+02 Score=27.69 Aligned_cols=87 Identities=15% Similarity=0.062 Sum_probs=58.5
Q ss_pred HHHHHHHHhcCCcEEEEEEEcCccccchHHHHHHHHhhcceEEEEEeecCCCCCCChhhHHHHHHHHhcCCceEEEEEeC
Q 002309 153 TAVAEMVSYYGWNAVSVIFVDNEYGRNGVSALNDKLAERRCRISYKSGIPPESGVNTGYVMDLLVKVALMESRVIVLHVS 232 (938)
Q Consensus 153 ~ai~~~l~~~~w~~vaii~~d~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~lk~~~~~viv~~~~ 232 (938)
..++.-....|-..+.++.+...| .+..+.+...-+..++.|.... +-.. .+ ++.+.+..++|.|++.+.
T Consensus 82 ~~~A~~y~~~GA~~IsVltd~~~f-~Gs~~~L~~ir~~v~lPVl~Kd-fi~d------~~--qi~ea~~~GAD~VlLi~a 151 (272)
T 3tsm_A 82 PALAKAYEEGGAACLSVLTDTPSF-QGAPEFLTAARQACSLPALRKD-FLFD------PY--QVYEARSWGADCILIIMA 151 (272)
T ss_dssp HHHHHHHHHTTCSEEEEECCSTTT-CCCHHHHHHHHHTSSSCEEEES-CCCS------TH--HHHHHHHTTCSEEEEETT
T ss_pred HHHHHHHHHCCCCEEEEecccccc-CCCHHHHHHHHHhcCCCEEECC-ccCC------HH--HHHHHHHcCCCEEEEccc
Confidence 455666667788899888744444 4566667666555667665333 2222 12 466778899999998754
Q ss_pred ---hhhHHHHHHHHHHcCCC
Q 002309 233 ---PSLGFQVFSVAKYLGMM 249 (938)
Q Consensus 233 ---~~~~~~~l~~a~~~g~~ 249 (938)
..+...+++.++++||.
T Consensus 152 ~L~~~~l~~l~~~a~~lGl~ 171 (272)
T 3tsm_A 152 SVDDDLAKELEDTAFALGMD 171 (272)
T ss_dssp TSCHHHHHHHHHHHHHTTCE
T ss_pred ccCHHHHHHHHHHHHHcCCe
Confidence 34677899999999973
No 348
>2vk2_A YTFQ, ABC transporter periplasmic-binding protein YTFQ; transport protein, galactofuranose; HET: GZL; 1.20A {Escherichia coli}
Probab=29.38 E-value=91 Score=31.61 Aligned_cols=79 Identities=10% Similarity=0.059 Sum_probs=52.7
Q ss_pred cEEEEEEE--cCccccchHHHHHHHHhhcceEEEEEeecCCCCCCChhhHHHHHHHHhcCCceEEEEEeChhh-HHHHHH
Q 002309 165 NAVSVIFV--DNEYGRNGVSALNDKLAERRCRISYKSGIPPESGVNTGYVMDLLVKVALMESRVIVLHVSPSL-GFQVFS 241 (938)
Q Consensus 165 ~~vaii~~--d~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~lk~~~~~viv~~~~~~~-~~~~l~ 241 (938)
.+|+++.. ++.|.......+.+++++.|+.+..... . .+.......++.+...+.|.||+...... ....++
T Consensus 3 ~~Ig~i~~~~~~~~~~~~~~gi~~~a~~~g~~l~~~~~---~--~~~~~~~~~i~~l~~~~vdgiIi~~~~~~~~~~~~~ 77 (306)
T 2vk2_A 3 LTVGFSQVGSESGWRAAETNVAKSEAEKRGITLKIADG---Q--QKQENQIKAVRSFVAQGVDAIFIAPVVATGWEPVLK 77 (306)
T ss_dssp CEEEEEECCCCSHHHHHHHHHHHHHHHHHTCEEEEEEC---T--TCHHHHHHHHHHHHHHTCSEEEECCSSSSSCHHHHH
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHHHHHHcCCEEEEeCC---C--CCHHHHHHHHHHHHHcCCCEEEEeCCChhhHHHHHH
Confidence 46888875 3556777788899999999998765321 1 12444456677777778999988754432 245667
Q ss_pred HHHHcCC
Q 002309 242 VAKYLGM 248 (938)
Q Consensus 242 ~a~~~g~ 248 (938)
.+.+.|+
T Consensus 78 ~~~~~~i 84 (306)
T 2vk2_A 78 EAKDAEI 84 (306)
T ss_dssp HHHHTTC
T ss_pred HHHHCCC
Confidence 7776664
No 349
>3cij_A UPF0100 protein AF_0094; archaeal periplasmic binding protein, unknown function, metal binding protein, transport protein; 1.07A {Archaeoglobus fulgidus} PDB: 2ons_A 2onk_E 2onr_A
Probab=29.32 E-value=4.4e+02 Score=26.24 Aligned_cols=71 Identities=11% Similarity=0.051 Sum_probs=42.8
Q ss_pred eHHHHHHHHHhC-CCCccEEEEecCCCCCCCChhHHHHhhhc-ce-ecEEeccEe--eec-CceeeeeeccceecccEEE
Q 002309 494 CIDVFTAAVNLL-PYAVPYQFVAFGDGHKNPSYTQLVDSITT-GV-FDAVVGDIT--IVT-NRTKIVDFSQPYAASGLVV 567 (938)
Q Consensus 494 ~~dll~~la~~l-~f~~~~~~~~~~~~~~~~~~~~~i~~l~~-g~-~D~~~~~~~--~t~-~r~~~v~fs~p~~~~~~~~ 567 (938)
.-++++.+.++. |.++++.+ ++...++..+.+ |. +|+.+..-. +.. .....++...||....+++
T Consensus 19 ~~~l~~~F~~~~~gi~V~~~~---------~~s~~l~~~i~~~g~~~Dv~~~a~~~~~~~l~~~gl~~~~~~~~~~~lvl 89 (295)
T 3cij_A 19 MKAFKRAFEEKHPNVEVQTEA---------AGSAATIRKVTELGRKADVIATADYTLIQKMMYPEFANWTIMFAKNQIVL 89 (295)
T ss_dssp HHHHHHHHHHHCTTCEEEEEE---------ECHHHHHHHHHTSCCCCSEEEESSTHHHHHHHTTTTCCCCEEEEECCEEE
T ss_pred HHHHHHHHHHHCCCceEEEEe---------CcHHHHHHHHHhCCCCCCEEEEcChhhHHHHHhCCCcceeeEEEeeeEEE
Confidence 345777777774 86654433 346678888887 74 898765311 110 1112234566788888888
Q ss_pred EEeccC
Q 002309 568 VVPFRK 573 (938)
Q Consensus 568 lv~~~~ 573 (938)
++++..
T Consensus 90 ~~~~~~ 95 (295)
T 3cij_A 90 AYRNDS 95 (295)
T ss_dssp EECTTS
T ss_pred EEeCCC
Confidence 887654
No 350
>3e61_A Putative transcriptional repressor of ribose OPER; structural genomics, DNA-binding, transcripti regulation, PSI-2; 2.00A {Staphylococcus saprophyticus subsp}
Probab=29.29 E-value=70 Score=31.86 Aligned_cols=77 Identities=5% Similarity=-0.003 Sum_probs=52.3
Q ss_pred CcEEEEEEEc--CccccchHHHHHHHHhhcceEEEEEeecCCCCCCChhhHHHHHHHHhcCCceEEEEEeChhhHHHHHH
Q 002309 164 WNAVSVIFVD--NEYGRNGVSALNDKLAERRCRISYKSGIPPESGVNTGYVMDLLVKVALMESRVIVLHVSPSLGFQVFS 241 (938)
Q Consensus 164 w~~vaii~~d--~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~lk~~~~~viv~~~~~~~~~~~l~ 241 (938)
-+.|+++..+ +.|.......+.+++++.|+.+..... . .+.......++.+...+.|.||+.... ...++
T Consensus 8 ~~~Ig~i~~~~~~~~~~~~~~gi~~~~~~~g~~~~~~~~-~----~~~~~~~~~~~~l~~~~~dgiIi~~~~---~~~~~ 79 (277)
T 3e61_A 8 SKLIGLLLPDMSNPFFTLIARGVEDVALAHGYQVLIGNS-D----NDIKKAQGYLATFVSHNCTGMISTAFN---ENIIE 79 (277)
T ss_dssp --CEEEEESCTTSHHHHHHHHHHHHHHHHTTCCEEEEEC-T----TCHHHHHHHHHHHHHTTCSEEEECGGG---HHHHH
T ss_pred CCEEEEEECCCCCHHHHHHHHHHHHHHHHCCCEEEEEeC-C----CCHHHHHHHHHHHHhCCCCEEEEecCC---hHHHH
Confidence 3568888854 567778889999999999988764321 1 224555677788888899999997632 33466
Q ss_pred -HHHHcCC
Q 002309 242 -VAKYLGM 248 (938)
Q Consensus 242 -~a~~~g~ 248 (938)
.+.+.|+
T Consensus 80 ~~l~~~~i 87 (277)
T 3e61_A 80 NTLTDHHI 87 (277)
T ss_dssp HHHHHC-C
T ss_pred HHHHcCCC
Confidence 6776665
No 351
>1oth_A Protein (ornithine transcarbamoylase); transferase; HET: PAO; 1.85A {Homo sapiens} SCOP: c.78.1.1 c.78.1.1 PDB: 1ep9_A 1fvo_A 1c9y_A* 1fb5_A
Probab=29.29 E-value=4.8e+02 Score=26.71 Aligned_cols=132 Identities=17% Similarity=0.167 Sum_probs=74.2
Q ss_pred eEEEEEEeeCCCcchhHHHHHHHHHHHHHhcCCCCCCCCEEEEEEccCCCChHHHHHHHHHHHhc--CcEEEEcCCChhH
Q 002309 31 VVNVGALFTLDSTIGRVAKIAIEEAVKDVNSNSSILHGTKLNITMQSSNCSGFIGMVEALRFMET--DIVAIIGPQCSTV 108 (938)
Q Consensus 31 ~i~IG~i~~~~~~~g~~~~~a~~~Av~~iN~~~~il~g~~l~~~~~D~~~~~~~a~~~a~~li~~--~V~aviGp~~s~~ 108 (938)
.-.|+.+|-..+. ..+.+|+.|+.++. |..+.+...++.-.-...+.-..+.++. .+.++=.+. ...
T Consensus 46 gk~l~~lF~e~ST---RTR~SFe~A~~~LG-------g~~i~l~~~~ss~~kgEsl~DTarvls~~~D~iviR~~~-~~~ 114 (321)
T 1oth_A 46 GKSLGMIFEKRST---RTRLSTETGFALLG-------GHPCFLTTQDIHLGVNESLTDTARVLSSMADAVLARVYK-QSD 114 (321)
T ss_dssp TCEEEEEESSCCS---HHHHHHHHHHHHTT-------CEEEEEETTTSCBTTTBCHHHHHHHHHHHCSEEEEECSC-HHH
T ss_pred CCEEEEEecCCCc---chHHHHHHHHHHcC-------CeEEEECCCcCcCCCCCCHHHHHHHHHHhCCEEEEeCCC-hhH
Confidence 3567888876653 67999999999872 4445454444321111112222222222 333333432 333
Q ss_pred HHHHHHhhccCCccEEEcccCCCCCCCCCCCceEEecCCchHHHHHHHHHH---Hhc---CCcEEEEEEEcCccccchHH
Q 002309 109 AHIVSYVSNELQVPLLSFGVTDPTLSSLQYPFFVRTTQSDSYQMTAVAEMV---SYY---GWNAVSVIFVDNEYGRNGVS 182 (938)
Q Consensus 109 ~~~va~~~~~~~iP~Is~~~~~~~l~~~~~p~~~r~~ps~~~~~~ai~~~l---~~~---~w~~vaii~~d~~~g~~~~~ 182 (938)
+..+++..++|+|... + +...| .+++++++ +++ .-.+|++|.+ +.....
T Consensus 115 ---~~~lA~~~~vPVINa~--~----~~~HP------------tQaLaDl~Ti~e~~g~l~gl~va~vGD----~~~va~ 169 (321)
T 1oth_A 115 ---LDTLAKEASIPIINGL--S----DLYHP------------IQILADYLTLQEHYSSLKGLTLSWIGD----GNNILH 169 (321)
T ss_dssp ---HHHHHHHCSSCEEESC--C----SSCCH------------HHHHHHHHHHHHHHSCCTTCEEEEESC----SSHHHH
T ss_pred ---HHHHHHhCCCCEEcCC--C----CCCCc------------HHHHHHHHHHHHHhCCcCCcEEEEECC----chhhHH
Confidence 3445566689999732 2 11222 57777774 344 3457777653 235777
Q ss_pred HHHHHHhhcceEEEEE
Q 002309 183 ALNDKLAERRCRISYK 198 (938)
Q Consensus 183 ~l~~~l~~~g~~v~~~ 198 (938)
.+..++...|.+|...
T Consensus 170 Sl~~~~~~~G~~v~~~ 185 (321)
T 1oth_A 170 SIMMSAAKFGMHLQAA 185 (321)
T ss_dssp HHHTTTGGGTCEEEEE
T ss_pred HHHHHHHHcCCeEEEE
Confidence 7888888889887654
No 352
>2csu_A 457AA long hypothetical protein; structural genomics, PH0766, riken ST genomics/proteomics initiative, RSGI, NPPSFA; 2.20A {Pyrococcus horikoshii} SCOP: c.2.1.8 c.23.4.1 c.23.4.1
Probab=29.28 E-value=1.4e+02 Score=32.72 Aligned_cols=144 Identities=10% Similarity=0.006 Sum_probs=89.3
Q ss_pred ChHHHHHHHHHHHhcCcEEEE-cC-C----Ch---hHHHHHHHhhccCCccEEEcccCCCCCCCCCCCceEEecCCchHH
Q 002309 81 SGFIGMVEALRFMETDIVAII-GP-Q----CS---TVAHIVSYVSNELQVPLLSFGVTDPTLSSLQYPFFVRTTQSDSYQ 151 (938)
Q Consensus 81 ~~~~a~~~a~~li~~~V~avi-Gp-~----~s---~~~~~va~~~~~~~iP~Is~~~~~~~l~~~~~p~~~r~~ps~~~~ 151 (938)
.+..+...+.++++.++.+++ -+ . .. .....+...+..+++.+|.+.|.. +-......-....|..
T Consensus 73 p~~~~~~~v~e~~~~Gi~~vv~~s~G~~e~g~~g~~~~~~l~~~a~~~g~~viGPnc~G--v~~~~~~~~~~~~~~~--- 147 (457)
T 2csu_A 73 PKRFVKDTLIQCGEKGVKGVVIITAGFGETGEEGKREEKELVEIAHKYGMRIIGPNCVG--IMNTHVDLNATFITVA--- 147 (457)
T ss_dssp CHHHHHHHHHHHHHHTCCEEEECCCSSTTSCHHHHHHHHHHHHHHHHHTCEEECSSCCE--EEEGGGTEEEESSCCC---
T ss_pred CHHHHHHHHHHHHHcCCCEEEEecCCCCccccccHHHHHHHHHHHHHcCCEEEcCCcce--EEccCCCceeeecCCC---
Confidence 456666677778877776543 21 1 11 125667788899999999765542 1111001111122221
Q ss_pred HHHHHHHHHhcCCcEEEEEEEcCccccchHHHHHHHHhhcceEEEEEeecCCCCCCChhhHHHHHHHHhc-CCceEEEEE
Q 002309 152 MTAVAEMVSYYGWNAVSVIFVDNEYGRNGVSALNDKLAERRCRISYKSGIPPESGVNTGYVMDLLVKVAL-MESRVIVLH 230 (938)
Q Consensus 152 ~~ai~~~l~~~~w~~vaii~~d~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~lk~-~~~~viv~~ 230 (938)
.. -+|++|.+... ....+.+.+.+.|+-+.....+-.. .+.++.+.|+-+.+ .++++|+++
T Consensus 148 ---------~~--G~v~~vsqSG~----~~~~~~~~~~~~g~G~s~~vs~G~~---~~~~~~d~l~~~~~D~~t~~I~l~ 209 (457)
T 2csu_A 148 ---------KK--GNVAFISQSGA----LGAGIVYKTIKEDIGFSKFISVGNM---ADVDFAELMEYLADTEEDKAIALY 209 (457)
T ss_dssp ---------EE--CSEEEEESCHH----HHHHHHHHHHHTTCEESEEEECTTC---CSSCHHHHHHHHTTCSSCCEEEEE
T ss_pred ---------CC--CCEEEEeCCHH----HHHHHHHHHHhcCCCeeEEEECCCc---CCCCHHHHHHHHhcCCCCCEEEEE
Confidence 11 46899886655 3455666777788766655555433 24567777777754 689999999
Q ss_pred eCh-hhHHHHHHHHHHcC
Q 002309 231 VSP-SLGFQVFSVAKYLG 247 (938)
Q Consensus 231 ~~~-~~~~~~l~~a~~~g 247 (938)
..+ .+...+++.|+...
T Consensus 210 ~E~i~~~~~f~~~a~~~~ 227 (457)
T 2csu_A 210 IEGVRNGKKFMEVAKRVT 227 (457)
T ss_dssp ESCCSCHHHHHHHHHHHH
T ss_pred EecCCCHHHHHHHHHHhc
Confidence 998 77888998888764
No 353
>2ioy_A Periplasmic sugar-binding protein; ribose binding protein, thermophilic proteins; HET: RIP; 1.90A {Thermoanaerobacter tengcongensis}
Probab=29.19 E-value=1.2e+02 Score=30.19 Aligned_cols=79 Identities=8% Similarity=0.101 Sum_probs=52.1
Q ss_pred cEEEEEEE--cCccccchHHHHHHHHhhcceEEEEEeecCCCCCCChhhHHHHHHHHhcCCceEEEEEeCh-hhHHHHHH
Q 002309 165 NAVSVIFV--DNEYGRNGVSALNDKLAERRCRISYKSGIPPESGVNTGYVMDLLVKVALMESRVIVLHVSP-SLGFQVFS 241 (938)
Q Consensus 165 ~~vaii~~--d~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~lk~~~~~viv~~~~~-~~~~~~l~ 241 (938)
+.|+++.. ++.|.......+.+++++.|..+..... . .+...-...++.+...+.|.||+.... ......++
T Consensus 2 ~~Igvi~~~~~~~f~~~~~~gi~~~~~~~g~~~~~~~~---~--~~~~~~~~~i~~l~~~~vdgiIi~~~~~~~~~~~~~ 76 (283)
T 2ioy_A 2 KTIGLVISTLNNPFFVTLKNGAEEKAKELGYKIIVEDS---Q--NDSSKELSNVEDLIQQKVDVLLINPVDSDAVVTAIK 76 (283)
T ss_dssp CEEEEEESCSSSHHHHHHHHHHHHHHHHHTCEEEEEEC---T--TCHHHHHHHHHHHHHTTCSEEEECCSSTTTTHHHHH
T ss_pred eEEEEEecCCCCHHHHHHHHHHHHHHHhcCcEEEEecC---C--CCHHHHHHHHHHHHHcCCCEEEEeCCchhhhHHHHH
Confidence 36777775 3567777888899999999988764321 1 123344456777777889998886433 33335667
Q ss_pred HHHHcCC
Q 002309 242 VAKYLGM 248 (938)
Q Consensus 242 ~a~~~g~ 248 (938)
.+.+.|+
T Consensus 77 ~~~~~~i 83 (283)
T 2ioy_A 77 EANSKNI 83 (283)
T ss_dssp HHHHTTC
T ss_pred HHHHCCC
Confidence 7777665
No 354
>3sds_A Ornithine carbamoyltransferase, mitochondrial; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.80A {Coccidioides immitis}
Probab=29.09 E-value=5.1e+02 Score=26.93 Aligned_cols=132 Identities=11% Similarity=0.107 Sum_probs=74.3
Q ss_pred eEEEEEEeeCCCcchhHHHHHHHHHHHHHhcCCCCCCCCEEEEEEccCCCChHHHHHHHHHHHhc--CcEEEEcCCChhH
Q 002309 31 VVNVGALFTLDSTIGRVAKIAIEEAVKDVNSNSSILHGTKLNITMQSSNCSGFIGMVEALRFMET--DIVAIIGPQCSTV 108 (938)
Q Consensus 31 ~i~IG~i~~~~~~~g~~~~~a~~~Av~~iN~~~~il~g~~l~~~~~D~~~~~~~a~~~a~~li~~--~V~aviGp~~s~~ 108 (938)
.-.|+.+|...+. ..+.+|+.|+.++. |..+.+-..|++-.-...+.-..+.++. .+.++=.+.. .
T Consensus 66 gk~va~lF~e~ST---RTR~SFE~A~~~LG-------g~~i~l~~~~s~l~kgEsl~DTarvLs~~~D~IviR~~~~-~- 133 (353)
T 3sds_A 66 GKTVAMMFSKRST---RTRVSTEGAVVKMG-------GHPMFLGKDDIQLGVNESLYDTSVVISSMVSCIVARVGPH-S- 133 (353)
T ss_dssp TCEEEEEESSCCH---HHHHHHHHHHHHTT-------CEEEEECTTTC--CCSSCHHHHHHHHHTSCSEEEEECSSH-H-
T ss_pred CCEEEEEecCCch---hHHHHHHHHHHHcC-------CeEEecCCccccccCCccHHHHHHHHHHhcCEEEEEeCCh-H-
Confidence 3578899987764 68899999999883 3333332223221111122222233333 3333334332 2
Q ss_pred HHHHHHhhccCCccEEEcccCCCCCCCCCCCceEEecCCchHHHHHHHHHH---HhcCC----------------cEEEE
Q 002309 109 AHIVSYVSNELQVPLLSFGVTDPTLSSLQYPFFVRTTQSDSYQMTAVAEMV---SYYGW----------------NAVSV 169 (938)
Q Consensus 109 ~~~va~~~~~~~iP~Is~~~~~~~l~~~~~p~~~r~~ps~~~~~~ai~~~l---~~~~w----------------~~vai 169 (938)
.+..+++..+||+|... ++ ... | .++++|++ +++|. .+|++
T Consensus 134 --~~~~lA~~s~vPVINag-~d-----~~H-------P-----tQaLaDl~TI~E~~G~~~~~~~~~~~~~~l~glkva~ 193 (353)
T 3sds_A 134 --DIANLAKHSSVPVINAL-CD-----TFH-------P-----LQAIADFLTIHESFASQSATHGTHPSSLGLEGLKIAW 193 (353)
T ss_dssp --HHHHHHHHCSSCEEEEE-CS-----SCC-------H-----HHHHHHHHHHHHHTC--------CTTCCSCTTCEEEE
T ss_pred --HHHHHHhhCCCCEEECC-CC-----CCC-------c-----HHHHHHHHHHHHHhCCCcccccccccccccCCCEEEE
Confidence 24556677799999743 22 112 2 57777763 45553 47777
Q ss_pred EEEcCccccchHHHHHHHHhhcceEEEEE
Q 002309 170 IFVDNEYGRNGVSALNDKLAERRCRISYK 198 (938)
Q Consensus 170 i~~d~~~g~~~~~~l~~~l~~~g~~v~~~ 198 (938)
|.+- ......+..++...|.+|...
T Consensus 194 vGD~----~nva~Sl~~~l~~lG~~v~~~ 218 (353)
T 3sds_A 194 VGDA----NNVLFDLAIAATKMGVNVAVA 218 (353)
T ss_dssp ESCC----CHHHHHHHHHHHHTTCEEEEE
T ss_pred ECCC----chHHHHHHHHHHHcCCEEEEE
Confidence 7532 347788888888899887654
No 355
>3egc_A Putative ribose operon repressor; structural genomics, unknown function, DNA-binding, transcri transcription regulation, PSI-2; 2.35A {Burkholderia thailandensis}
Probab=29.05 E-value=49 Score=33.36 Aligned_cols=80 Identities=10% Similarity=0.019 Sum_probs=55.1
Q ss_pred CCcEEEEEEEc--CccccchHHHHHHHHhhcceEEEEEeecCCCCCCChhhHHHHHHHHhcCCceEEEEEeChhhHHHHH
Q 002309 163 GWNAVSVIFVD--NEYGRNGVSALNDKLAERRCRISYKSGIPPESGVNTGYVMDLLVKVALMESRVIVLHVSPSLGFQVF 240 (938)
Q Consensus 163 ~w~~vaii~~d--~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~lk~~~~~viv~~~~~~~~~~~l 240 (938)
+-+.|+++..+ +.|.......+.+++++.|+.+..... . .+.......++.+...+.|.||+..... ....+
T Consensus 7 ~~~~Igvv~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~---~--~~~~~~~~~~~~l~~~~vdgiIi~~~~~-~~~~~ 80 (291)
T 3egc_A 7 RSNVVGLIVSDIENVFFAEVASGVESEARHKGYSVLLANT---A--EDIVREREAVGQFFERRVDGLILAPSEG-EHDYL 80 (291)
T ss_dssp CCCEEEEEESCTTSHHHHHHHHHHHHHHHHTTCEEEEEEC---T--TCHHHHHHHHHHHHHTTCSEEEECCCSS-CCHHH
T ss_pred CCcEEEEEECCCcchHHHHHHHHHHHHHHHCCCEEEEEeC---C--CCHHHHHHHHHHHHHCCCCEEEEeCCCC-ChHHH
Confidence 34678888854 456677888999999999998765321 1 2245556677888888999999876544 34456
Q ss_pred HHHHHcCC
Q 002309 241 SVAKYLGM 248 (938)
Q Consensus 241 ~~a~~~g~ 248 (938)
+.+.+.|+
T Consensus 81 ~~~~~~~i 88 (291)
T 3egc_A 81 RTELPKTF 88 (291)
T ss_dssp HHSSCTTS
T ss_pred HHhhccCC
Confidence 66655554
No 356
>3d8u_A PURR transcriptional regulator; APC91343.1, vibrio parahaem RIMD 2210633, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.88A {Vibrio parahaemolyticus}
Probab=28.67 E-value=83 Score=31.20 Aligned_cols=78 Identities=9% Similarity=0.041 Sum_probs=51.5
Q ss_pred cEEEEEEEc--CccccchHHHHHHHHhhcceEEEEEeecCCCCCCChhhHHHHHHHHhcCCceEEEEEeChhhHHHHHHH
Q 002309 165 NAVSVIFVD--NEYGRNGVSALNDKLAERRCRISYKSGIPPESGVNTGYVMDLLVKVALMESRVIVLHVSPSLGFQVFSV 242 (938)
Q Consensus 165 ~~vaii~~d--~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~lk~~~~~viv~~~~~~~~~~~l~~ 242 (938)
+.|+++..+ +.|.......+.+++++.|..+.... .. .+.......++.+...+.|.||+...... ...++.
T Consensus 4 ~~Ig~i~~~~~~~~~~~~~~gi~~~~~~~g~~~~~~~---~~--~~~~~~~~~~~~l~~~~vdgii~~~~~~~-~~~~~~ 77 (275)
T 3d8u_A 4 YSIALIIPSLFEKACAHFLPSFQQALNKAGYQLLLGY---SD--YSIEQEEKLLSTFLESRPAGVVLFGSEHS-QRTHQL 77 (275)
T ss_dssp CEEEEEESCSSCHHHHHHHHHHHHHHHHTSCEECCEE---CT--TCHHHHHHHHHHHHTSCCCCEEEESSCCC-HHHHHH
T ss_pred eEEEEEeCCCccccHHHHHHHHHHHHHHCCCEEEEEc---CC--CCHHHHHHHHHHHHhcCCCEEEEeCCCCC-HHHHHH
Confidence 468888753 55667788899999999998865321 11 22444556777888888998888754322 245666
Q ss_pred HHHcCC
Q 002309 243 AKYLGM 248 (938)
Q Consensus 243 a~~~g~ 248 (938)
+.+.|.
T Consensus 78 l~~~~i 83 (275)
T 3d8u_A 78 LEASNT 83 (275)
T ss_dssp HHHHTC
T ss_pred HHhCCC
Confidence 666564
No 357
>3hs3_A Ribose operon repressor; PSI-II, NYSGXRC, periplasmic binding protein, structural genomics, protein structure initiative; 1.60A {Lactobacillus acidophilus}
Probab=28.66 E-value=1.1e+02 Score=30.48 Aligned_cols=68 Identities=6% Similarity=0.081 Sum_probs=47.7
Q ss_pred HHhcCCcEEEEEEEc--CccccchHHHHHHHHhhcceE-EEEEeecCCCCCCChhhHHHHHHHHhcCCceEEEEEe
Q 002309 159 VSYYGWNAVSVIFVD--NEYGRNGVSALNDKLAERRCR-ISYKSGIPPESGVNTGYVMDLLVKVALMESRVIVLHV 231 (938)
Q Consensus 159 l~~~~w~~vaii~~d--~~~g~~~~~~l~~~l~~~g~~-v~~~~~~~~~~~~~~~d~~~~l~~lk~~~~~viv~~~ 231 (938)
++.-.-+.|+++..+ +.|.......+.+++++.|.. +... ... .+...-...++.+...+.|.||+..
T Consensus 5 L~~~~~~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~---~~~--~~~~~~~~~~~~l~~~~vdgiIi~~ 75 (277)
T 3hs3_A 5 LYQKKSKMIGIIIPDLNNRFYAQIIDGIQEVIQKEGYTALISF---STN--SDVKKYQNAIINFENNNVDGIITSA 75 (277)
T ss_dssp ---CCCCEEEEEESCTTSHHHHHHHHHHHHHHHHTTCEEEEEE---CSS--CCHHHHHHHHHHHHHTTCSEEEEEC
T ss_pred hhcCCCCEEEEEeCCCCChhHHHHHHHHHHHHHHCCCCEEEEE---eCC--CChHHHHHHHHHHHhCCCCEEEEcc
Confidence 344455789998864 567778889999999999998 6532 211 2244556677888888999999887
No 358
>3kjx_A Transcriptional regulator, LACI family; LACL family, protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.33A {Silicibacter pomeroyi}
Probab=28.61 E-value=1.8e+02 Score=30.05 Aligned_cols=78 Identities=12% Similarity=0.037 Sum_probs=54.3
Q ss_pred cEEEEEEEc--CccccchHHHHHHHHhhcceEEEEEeecCCCCCCChhhHHHHHHHHhcCCceEEEEEeChhhHHHHHHH
Q 002309 165 NAVSVIFVD--NEYGRNGVSALNDKLAERRCRISYKSGIPPESGVNTGYVMDLLVKVALMESRVIVLHVSPSLGFQVFSV 242 (938)
Q Consensus 165 ~~vaii~~d--~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~lk~~~~~viv~~~~~~~~~~~l~~ 242 (938)
+.|+++..+ +.|.......+.+++++.|+.+..... . .+.......++.+...+.|.||+....... ..++.
T Consensus 69 ~~Ig~i~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~-~----~~~~~~~~~i~~l~~~~vdGiIi~~~~~~~-~~~~~ 142 (344)
T 3kjx_A 69 NLVAVIIPSLSNMVFPEVLTGINQVLEDTELQPVVGVT-D----YLPEKEEKVLYEMLSWRPSGVIIAGLEHSE-AARAM 142 (344)
T ss_dssp SEEEEEESCSSSSSHHHHHHHHHHHHTSSSSEEEEEEC-T----TCHHHHHHHHHHHHTTCCSEEEEECSCCCH-HHHHH
T ss_pred CEEEEEeCCCCcHHHHHHHHHHHHHHHHCCCEEEEEeC-C----CCHHHHHHHHHHHHhCCCCEEEEECCCCCH-HHHHH
Confidence 478888753 567778889999999999998764321 1 124455667778888899999987644332 56666
Q ss_pred HHHcCC
Q 002309 243 AKYLGM 248 (938)
Q Consensus 243 a~~~g~ 248 (938)
+.+.|+
T Consensus 143 l~~~~i 148 (344)
T 3kjx_A 143 LDAAGI 148 (344)
T ss_dssp HHHCSS
T ss_pred HHhCCC
Confidence 776665
No 359
>2pln_A HP1043, response regulator; signaling protein; 1.80A {Helicobacter pylori} PDB: 2hqo_A
Probab=28.54 E-value=1.9e+02 Score=24.59 Aligned_cols=54 Identities=11% Similarity=-0.019 Sum_probs=32.5
Q ss_pred hHHHHHHHHhhcceEEEEEeecCCCCCCChhhHHHHHHHHhcCCceEEEEEeChhhHHHHHHHHHHc
Q 002309 180 GVSALNDKLAERRCRISYKSGIPPESGVNTGYVMDLLVKVALMESRVIVLHVSPSLGFQVFSVAKYL 246 (938)
Q Consensus 180 ~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~lk~~~~~viv~~~~~~~~~~~l~~a~~~ 246 (938)
....+.+.+++.|..+.. . .+....+..+....+++|+ +...+...+++++++.
T Consensus 30 ~~~~l~~~L~~~g~~v~~---~--------~~~~~al~~l~~~~~dlvi--~~~~~g~~~~~~l~~~ 83 (137)
T 2pln_A 30 LGGEIEKGLNVKGFMADV---T--------ESLEDGEYLMDIRNYDLVM--VSDKNALSFVSRIKEK 83 (137)
T ss_dssp HHHHHHHHHHHTTCEEEE---E--------SCHHHHHHHHHHSCCSEEE--ECSTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcEEEE---e--------CCHHHHHHHHHcCCCCEEE--EcCccHHHHHHHHHhc
Confidence 455666777777776541 1 1223445555556788888 5555666777777765
No 360
>1vlv_A Otcase, ornithine carbamoyltransferase; TM1097, structural genomics, protein structure initiative, PSI, joint center for structu genomics; 2.25A {Thermotoga maritima} SCOP: c.78.1.1 c.78.1.1
Probab=28.10 E-value=5.1e+02 Score=26.59 Aligned_cols=133 Identities=14% Similarity=0.130 Sum_probs=75.2
Q ss_pred eEEEEEEeeCCCcchhHHHHHHHHHHHHHhcCCCCCCCCEEEEEEccCCCChHHHHHHHHHHHhc--CcEEEEcCCChhH
Q 002309 31 VVNVGALFTLDSTIGRVAKIAIEEAVKDVNSNSSILHGTKLNITMQSSNCSGFIGMVEALRFMET--DIVAIIGPQCSTV 108 (938)
Q Consensus 31 ~i~IG~i~~~~~~~g~~~~~a~~~Av~~iN~~~~il~g~~l~~~~~D~~~~~~~a~~~a~~li~~--~V~aviGp~~s~~ 108 (938)
.-.|+.+|-..+. ..+.+|+.|+.++. |..+.+...++.-.-...+.-..+.++. .+.++=++. ...
T Consensus 58 gk~la~lF~epST---RTR~SFE~A~~~LG-------g~~i~l~~~~ss~~kgEsl~DTarvLs~~~D~iviR~~~-~~~ 126 (325)
T 1vlv_A 58 GMTLAMIFEKRST---RTRLAFETAFAEEG-------GHPIFLSPNDIHLGAKESLEDTARVLGRMVDAIMFRGYK-QET 126 (325)
T ss_dssp TCEEEEEESSCCH---HHHHHHHHHHHHTT-------CEEEEECTTTCCTTTSSCHHHHHHHHHTTCSEEEEESSC-HHH
T ss_pred CCEEEEEeccCCc---chHHHHHHHHHHcC-------CeEEEECCccccCCCCcCHHHHHHHHHHhCCEEEEECCC-hHH
Confidence 3578888877663 68999999999872 3444443333332111223333333443 333333443 333
Q ss_pred HHHHHHhhccCCccEEEcccCCCCCCCCCCCceEEecCCchHHHHHHHHHH---Hhc---CCcEEEEEEEcCccccchHH
Q 002309 109 AHIVSYVSNELQVPLLSFGVTDPTLSSLQYPFFVRTTQSDSYQMTAVAEMV---SYY---GWNAVSVIFVDNEYGRNGVS 182 (938)
Q Consensus 109 ~~~va~~~~~~~iP~Is~~~~~~~l~~~~~p~~~r~~ps~~~~~~ai~~~l---~~~---~w~~vaii~~d~~~g~~~~~ 182 (938)
. ..+++..++|+|.. .+ +...| .+++++++ +++ .-.+|+++.+ .. .....
T Consensus 127 ~---~~lA~~~~vPVINa--~~----~~~HP------------tQaLaDl~Ti~e~~g~l~gl~va~vGD--~~-~rva~ 182 (325)
T 1vlv_A 127 V---EKLAEYSGVPVYNG--LT----DEFHP------------TQALADLMTIEENFGRLKGVKVVFMGD--TR-NNVAT 182 (325)
T ss_dssp H---HHHHHHHCSCEEES--CC----SSCCH------------HHHHHHHHHHHHHHSCSTTCEEEEESC--TT-SHHHH
T ss_pred H---HHHHHhCCCCEEeC--CC----CCCCc------------HHHHHHHHHHHHHhCCcCCcEEEEECC--CC-cCcHH
Confidence 3 33445557999972 22 11222 57777774 344 3457777653 22 35778
Q ss_pred HHHHHHhhcceEEEEE
Q 002309 183 ALNDKLAERRCRISYK 198 (938)
Q Consensus 183 ~l~~~l~~~g~~v~~~ 198 (938)
.+..++...|.+|...
T Consensus 183 Sl~~~~~~~G~~v~~~ 198 (325)
T 1vlv_A 183 SLMIACAKMGMNFVAC 198 (325)
T ss_dssp HHHHHHHHTTCEEEEE
T ss_pred HHHHHHHHCCCEEEEE
Confidence 8888888889887654
No 361
>2x7x_A Sensor protein; transferase, sensor histidine kinase; HET: FRU; 2.64A {Bacteroides thetaiotaomicron}
Probab=28.04 E-value=1.6e+02 Score=30.01 Aligned_cols=80 Identities=5% Similarity=-0.018 Sum_probs=52.4
Q ss_pred CcEEEEEEEc-CccccchHHHHHHHHhhc-ceEEEEEeecCCCCCCChhhHHHHHHHHhcCCceEEEEEeChhh-HHHHH
Q 002309 164 WNAVSVIFVD-NEYGRNGVSALNDKLAER-RCRISYKSGIPPESGVNTGYVMDLLVKVALMESRVIVLHVSPSL-GFQVF 240 (938)
Q Consensus 164 w~~vaii~~d-~~~g~~~~~~l~~~l~~~-g~~v~~~~~~~~~~~~~~~d~~~~l~~lk~~~~~viv~~~~~~~-~~~~l 240 (938)
-.+|+++..+ +.|.......+.+++++. |+.+..... . .+.......++.+...+.|.||+...... ....+
T Consensus 6 ~~~Igvi~~~~~~~~~~~~~gi~~~a~~~~g~~l~i~~~-~----~~~~~~~~~i~~l~~~~vdgiIi~~~~~~~~~~~~ 80 (325)
T 2x7x_A 6 HFRIGVAQCSDDSWRHKMNDEILREAMFYNGVSVEIRSA-G----DDNSKQAEDVHYFMDEGVDLLIISANEAAPMTPIV 80 (325)
T ss_dssp CCEEEEEESCCSHHHHHHHHHHHHHHTTSSSCEEEEEEC-T----TCHHHHHHHHHHHHHTTCSEEEECCSSHHHHHHHH
T ss_pred CeEEEEEecCCCHHHHHHHHHHHHHHHHcCCcEEEEeCC-C----CCHHHHHHHHHHHHHcCCCEEEEeCCCHHHHHHHH
Confidence 3578887754 445556778888888888 988764321 1 12444556677777788999988755433 24567
Q ss_pred HHHHHcCC
Q 002309 241 SVAKYLGM 248 (938)
Q Consensus 241 ~~a~~~g~ 248 (938)
+.+.+.|+
T Consensus 81 ~~~~~~~i 88 (325)
T 2x7x_A 81 EEAYQKGI 88 (325)
T ss_dssp HHHHHTTC
T ss_pred HHHHHCCC
Confidence 77776664
No 362
>3kbq_A Protein TA0487; structural genomics, CINA, protein structure initiative, MCS midwest center for structural genomics, unknown function; 2.00A {Thermoplasma acidophilum}
Probab=27.99 E-value=1.3e+02 Score=27.71 Aligned_cols=63 Identities=17% Similarity=0.094 Sum_probs=41.2
Q ss_pred cEEEEEEEcCcc--cc---chHHHHHHHHhhcceEEEEEeecCCCCCCChhhHHHHHHHHhcCCceEEEEEeC
Q 002309 165 NAVSVIFVDNEY--GR---NGVSALNDKLAERRCRISYKSGIPPESGVNTGYVMDLLVKVALMESRVIVLHVS 232 (938)
Q Consensus 165 ~~vaii~~d~~~--g~---~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~lk~~~~~viv~~~~ 232 (938)
-+++||...|+- |+ .....+.+.+++.|+++.....++-+ .+.+...++++.+ ++|+||+.+.
T Consensus 4 ~~v~IistGdEll~G~i~DtN~~~l~~~L~~~G~~v~~~~iv~Dd----~~~I~~~l~~a~~-~~DlVittGG 71 (172)
T 3kbq_A 4 KNASVITVGNEILKGRTVNTNAAFIGNFLTYHGYQVRRGFVVMDD----LDEIGWAFRVALE-VSDLVVSSGG 71 (172)
T ss_dssp CEEEEEEECHHHHTTSSCCHHHHHHHHHHHHTTCEEEEEEEECSC----HHHHHHHHHHHHH-HCSEEEEESC
T ss_pred CEEEEEEEcccccCCcEEeHHHHHHHHHHHHCCCEEEEEEEeCCC----HHHHHHHHHHHHh-cCCEEEEcCC
Confidence 367777754431 22 34567788888889888776666643 6677777776654 3788877653
No 363
>2dri_A D-ribose-binding protein; sugar transport; HET: RIP; 1.60A {Escherichia coli} SCOP: c.93.1.1 PDB: 1urp_A* 1ba2_A 1dbp_A* 1drj_A* 1drk_A* 2gx6_A*
Probab=27.55 E-value=1.4e+02 Score=29.41 Aligned_cols=79 Identities=5% Similarity=0.079 Sum_probs=52.3
Q ss_pred cEEEEEEEc--CccccchHHHHHHHHhhcceEEEEEeecCCCCCCChhhHHHHHHHHhcCCceEEEEEeChh-hHHHHHH
Q 002309 165 NAVSVIFVD--NEYGRNGVSALNDKLAERRCRISYKSGIPPESGVNTGYVMDLLVKVALMESRVIVLHVSPS-LGFQVFS 241 (938)
Q Consensus 165 ~~vaii~~d--~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~lk~~~~~viv~~~~~~-~~~~~l~ 241 (938)
+.|+++..+ +.|.......+.+++++.|..+..... . .+...-...++.+...+.|.|++..... .....++
T Consensus 2 ~~Igvi~~~~~~~f~~~~~~gi~~~~~~~g~~~~~~~~--~---~~~~~~~~~i~~l~~~~vdgiIi~~~~~~~~~~~~~ 76 (271)
T 2dri_A 2 DTIALVVSTLNNPFFVSLKDGAQKEADKLGYNLVVLDS--Q---NNPAKELANVQDLTVRGTKILLINPTDSDAVGNAVK 76 (271)
T ss_dssp CEEEEEESCSSSHHHHHHHHHHHHHHHHHTCEEEEEEC--T---TCHHHHHHHHHHHTTTTEEEEEECCSSTTTTHHHHH
T ss_pred cEEEEEecCCCCHHHHHHHHHHHHHHHHcCcEEEEeCC--C---CCHHHHHHHHHHHHHcCCCEEEEeCCChHHHHHHHH
Confidence 467887753 567777888999999999988765321 1 1233345567777778899988864432 2235667
Q ss_pred HHHHcCC
Q 002309 242 VAKYLGM 248 (938)
Q Consensus 242 ~a~~~g~ 248 (938)
.+.+.|.
T Consensus 77 ~~~~~~i 83 (271)
T 2dri_A 77 MANQANI 83 (271)
T ss_dssp HHHHTTC
T ss_pred HHHHCCC
Confidence 7776664
No 364
>3pzy_A MOG; ssgcid, seattle structural genomics center for infectious DI biosynthetic protein; 1.80A {Mycobacterium avium subsp} PDB: 3oi9_A 2g4r_A
Probab=27.38 E-value=84 Score=28.77 Aligned_cols=63 Identities=16% Similarity=0.093 Sum_probs=43.1
Q ss_pred cEEEEEEEcCcc--c---cchHHHHHHHHhhcceEEEEEeecCCCCCCChhhHHHHHHHHhcCCceEEEEEeC
Q 002309 165 NAVSVIFVDNEY--G---RNGVSALNDKLAERRCRISYKSGIPPESGVNTGYVMDLLVKVALMESRVIVLHVS 232 (938)
Q Consensus 165 ~~vaii~~d~~~--g---~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~lk~~~~~viv~~~~ 232 (938)
.+|+||...|+- | ......+.+.+++.|.++.....++ .+ +.+...+++..+.++|+|++.+.
T Consensus 8 ~rv~ii~tGdEl~~G~i~Dsn~~~l~~~l~~~G~~v~~~~iv~----Dd-~~i~~al~~a~~~~~DlVittGG 75 (164)
T 3pzy_A 8 RSARVIIASTRASSGEYEDRCGPIITEWLAQQGFSSAQPEVVA----DG-SPVGEALRKAIDDDVDVILTSGG 75 (164)
T ss_dssp CEEEEEEECHHHHC----CCHHHHHHHHHHHTTCEECCCEEEC----SS-HHHHHHHHHHHHTTCSEEEEESC
T ss_pred CEEEEEEECCCCCCCceeeHHHHHHHHHHHHCCCEEEEEEEeC----CH-HHHHHHHHHHHhCCCCEEEECCC
Confidence 478888765442 2 2345678889999999887554443 34 67777777766557999998754
No 365
>5nul_A Flavodoxin; electron transport, flavoprotein, FMN; HET: FMN; 1.60A {Clostridium beijerinckii} SCOP: c.23.5.1 PDB: 2flv_A* 2fvx_A* 1fld_A* 3nll_A* 1fvx_A* 1fla_A* 4nll_A* 5nll_A* 2fox_A* 5ull_A* 2fdx_A* 2fax_A* 6nul_A* 1fln_A* 4nul_A*
Probab=27.23 E-value=1.6e+02 Score=25.59 Aligned_cols=81 Identities=5% Similarity=0.015 Sum_probs=0.0
Q ss_pred EEEEE-EcCccccchHHHHHHHHhhcceEEEEEeecCCCCCCChhhHHHHHHHHhcCCceEEEEEeC-------hh-hHH
Q 002309 167 VSVIF-VDNEYGRNGVSALNDKLAERRCRISYKSGIPPESGVNTGYVMDLLVKVALMESRVIVLHVS-------PS-LGF 237 (938)
Q Consensus 167 vaii~-~d~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~lk~~~~~viv~~~~-------~~-~~~ 237 (938)
|.|+| +.+...+..++.+.+.+++.|.++.....-... ..++ .+.|.|++.++ +. ...
T Consensus 1 i~I~Y~S~tGnT~~iA~~ia~~l~~~g~~v~~~~~~~~~----~~~l---------~~~d~iiig~pty~~g~~p~~~~~ 67 (138)
T 5nul_A 1 MKIVYWSGTGNTEKMAELIAKGIIESGKDVNTINVSDVN----IDEL---------LNEDILILGCSAMTDEVLEESEFE 67 (138)
T ss_dssp CEEEEECSSSHHHHHHHHHHHHHHHTTCCCEEEEGGGCC----HHHH---------TTCSEEEEEECCBTTTBCCTTTHH
T ss_pred CEEEEECCCchHHHHHHHHHHHHHHCCCeEEEEEhhhCC----HHHH---------hhCCEEEEEcCccCCCCCChHHHH
Q ss_pred HHHHHHHHcCCCCCCeEEEEeCcc
Q 002309 238 QVFSVAKYLGMMGNGYVWIATDWL 261 (938)
Q Consensus 238 ~~l~~a~~~g~~~~~~~wi~~~~~ 261 (938)
.+++..... +.+..+..+.+.++
T Consensus 68 ~fl~~l~~~-l~~k~~~~f~t~g~ 90 (138)
T 5nul_A 68 PFIEEISTK-ISGKKVALFGSYGW 90 (138)
T ss_dssp HHHHHHGGG-CTTCEEEEEEEESS
T ss_pred HHHHHHHhh-cCCCEEEEEEecCC
No 366
>2rjo_A Twin-arginine translocation pathway signal protei; PSI-2, NYSGXRC, twin arginine translocation pathway signal P structural genomics; HET: GAL; 2.05A {Burkholderia phytofirmans}
Probab=27.22 E-value=98 Score=31.86 Aligned_cols=79 Identities=9% Similarity=-0.040 Sum_probs=52.8
Q ss_pred cEEEEEEE--cCccccchHHHHHHHHhhcceEEEEEeecCCCCCCChhhHHHHHHHHhcCC--ceEEEEEeChhh-HHHH
Q 002309 165 NAVSVIFV--DNEYGRNGVSALNDKLAERRCRISYKSGIPPESGVNTGYVMDLLVKVALME--SRVIVLHVSPSL-GFQV 239 (938)
Q Consensus 165 ~~vaii~~--d~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~lk~~~--~~viv~~~~~~~-~~~~ 239 (938)
.+|+++.. ++.|.......+.+++++.|+.+..... . .+.......++.+...+ .|.||+...... ....
T Consensus 6 ~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~l~~~~~---~--~~~~~~~~~i~~l~~~~~~vdgiIi~~~~~~~~~~~ 80 (332)
T 2rjo_A 6 TTLACSFRSLTNPYYTAFNKGAQSFAKSVGLPYVPLTT---E--GSSEKGIADIRALLQKTGGNLVLNVDPNDSADARVI 80 (332)
T ss_dssp CEEEEEESCTTSHHHHHHHHHHHHHHHHHTCCEEEEEC---T--TCHHHHHHHHHHHHHHTTTCEEEEECCSSHHHHHHH
T ss_pred cEEEEEecCCCcHHHHHHHHHHHHHHHHcCCEEEEecC---C--CCHHHHHHHHHHHHHCCCCCCEEEEeCCCHHHHHHH
Confidence 46888875 3566777888899999999988764321 1 12344455677777777 999888655433 3356
Q ss_pred HHHHHHcCC
Q 002309 240 FSVAKYLGM 248 (938)
Q Consensus 240 l~~a~~~g~ 248 (938)
++.+.+.|+
T Consensus 81 ~~~~~~~~i 89 (332)
T 2rjo_A 81 VEACSKAGA 89 (332)
T ss_dssp HHHHHHHTC
T ss_pred HHHHHHCCC
Confidence 777776664
No 367
>3hcw_A Maltose operon transcriptional repressor; RNA-binding, PSI-2, NYSGXRC, STRU genomics, protein structure initiative; 2.20A {Staphylococcus aureus subsp}
Probab=27.12 E-value=81 Score=31.84 Aligned_cols=78 Identities=6% Similarity=-0.013 Sum_probs=52.2
Q ss_pred cEEEEEEE-------cCccccchHHHHHHHHhhcceEEEEEeecCCCCCCChhhHHHHHHHHhcCCceEEEEEeChhhHH
Q 002309 165 NAVSVIFV-------DNEYGRNGVSALNDKLAERRCRISYKSGIPPESGVNTGYVMDLLVKVALMESRVIVLHVSPSLGF 237 (938)
Q Consensus 165 ~~vaii~~-------d~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~lk~~~~~viv~~~~~~~~~ 237 (938)
+.|++|.. ++.|.......+.+++++.|..+... ... .+...-...++.+...+.|.||+...... .
T Consensus 8 ~~Igvi~~~~~~~~~~~~f~~~~~~gi~~~a~~~g~~~~~~---~~~--~~~~~~~~~~~~l~~~~vdGiI~~~~~~~-~ 81 (295)
T 3hcw_A 8 YKIGLVLKGSEEPIRLNPFYINVLLGISETCNQHGYGTQTT---VSN--NMNDLMDEVYKMIKQRMVDAFILLYSKEN-D 81 (295)
T ss_dssp CEEEEECSCCCHHHHSCHHHHHHHHHHHHHHHTTTCEEEEC---CCC--SHHHHHHHHHHHHHTTCCSEEEESCCCTT-C
T ss_pred cEEEEEeecCCcccccChHHHHHHHHHHHHHHHCCCEEEEE---cCC--CChHHHHHHHHHHHhCCcCEEEEcCcccC-h
Confidence 57888872 35677788899999999999987632 211 12334456677788889999998754322 2
Q ss_pred HHHHHHHHcCC
Q 002309 238 QVFSVAKYLGM 248 (938)
Q Consensus 238 ~~l~~a~~~g~ 248 (938)
..++.+.+.|+
T Consensus 82 ~~~~~l~~~~i 92 (295)
T 3hcw_A 82 PIKQMLIDESM 92 (295)
T ss_dssp HHHHHHHHTTC
T ss_pred HHHHHHHhCCC
Confidence 45666666664
No 368
>1sg6_A Pentafunctional AROM polypeptide; shikimate pathway, aromatic amino acid biosynthesis, DHQS, O form J, domain movement, cyclase, lyase; HET: NAD; 1.70A {Emericella nidulans} SCOP: e.22.1.1 PDB: 1nr5_A* 1nrx_A* 1nua_A 1nva_A* 1nvb_A* 1nvd_A* 1nve_A* 1nvf_A* 1dqs_A*
Probab=27.00 E-value=2.1e+02 Score=30.44 Aligned_cols=96 Identities=13% Similarity=0.052 Sum_probs=62.0
Q ss_pred HHhcCCcEEEEEEEcCccccchHHHHHHHHhhc------ceEEEEEeecCCCC-CCChhhHHHHHHHHhcCC--c---eE
Q 002309 159 VSYYGWNAVSVIFVDNEYGRNGVSALNDKLAER------RCRISYKSGIPPES-GVNTGYVMDLLVKVALME--S---RV 226 (938)
Q Consensus 159 l~~~~w~~vaii~~d~~~g~~~~~~l~~~l~~~------g~~v~~~~~~~~~~-~~~~~d~~~~l~~lk~~~--~---~v 226 (938)
++.++.+++.+|++...... ..+.+.+.+++. |+++.. ..++... ..+.+.+....+.+++.+ . ++
T Consensus 31 ~~~~~~~k~liVtd~~v~~~-~~~~v~~~L~~~~~~~~~g~~~~~-~~~~~gE~~k~~~~v~~~~~~~~~~~~~~~r~d~ 108 (393)
T 1sg6_A 31 ISDCSSTTYVLVTDTNIGSI-YTPSFEEAFRKRAAEITPSPRLLI-YNRPPGEVSKSRQTKADIEDWMLSQNPPCGRDTV 108 (393)
T ss_dssp HHHSCCSEEEEEEEHHHHHH-HHHHHHHHHHHHHHHSSSCCEEEE-EEECSSGGGSSHHHHHHHHHHHHTSSSCCCTTCE
T ss_pred HHhcCCCeEEEEECCcHHHH-HHHHHHHHHHhhhccccCCceeEE-EEeCCCCCCCCHHHHHHHHHHHHHcCCCCCCCCE
Confidence 46678899999986554333 567777777766 766642 2344320 123567788888888878 7 88
Q ss_pred EEEEeCh--hhHHHHHHHHHHcCCCCCCeEEEEeC
Q 002309 227 IVLHVSP--SLGFQVFSVAKYLGMMGNGYVWIATD 259 (938)
Q Consensus 227 iv~~~~~--~~~~~~l~~a~~~g~~~~~~~wi~~~ 259 (938)
||-.+.+ .+...++......|+ .++-|-|.
T Consensus 109 iIalGGGsv~D~ak~~Aa~~~rgi---p~i~IPTT 140 (393)
T 1sg6_A 109 VIALGGGVIGDLTGFVASTYMRGV---RYVQVPTT 140 (393)
T ss_dssp EEEEESHHHHHHHHHHHHHGGGCC---EEEEEECS
T ss_pred EEEECCcHHHHHHHHHHHHhcCCC---CEEEECCc
Confidence 8877654 467777766555453 56666664
No 369
>3mwb_A Prephenate dehydratase; L-Phe, PSI, MCSG, structural genomics, midwest center for ST genomics, protein structure initiative, lyase; HET: MSE PHE; 2.00A {Arthrobacter aurescens}
Probab=26.98 E-value=1.1e+02 Score=31.42 Aligned_cols=85 Identities=11% Similarity=0.138 Sum_probs=56.8
Q ss_pred CCCeeEE--eCchHHHHHHHhcccccccccccCCHHHHHHHHhcCCCCCceEEEEecc------h---hHHHHHhcCCcE
Q 002309 700 DDPIGYQ--EGSFAEYYLSQELNISKSRLVALRTPEDYAKALKDGPGKGGVAAVVDER------P---YVELFLSSQCSF 768 (938)
Q Consensus 700 ~~~i~~~--~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~a~i~~~------~---~~~~~~~~~~~l 768 (938)
..+|+++ .|++.+....+...-+...++++.+.++.++++.+ |+.+.-+... . .++. +.+..++
T Consensus 6 ~~~VaylGp~GtfS~~Aa~~~~~~~~~~~~p~~s~~~vf~aV~~----g~~d~gVvPiENS~~G~V~~tlD~-L~~~~~l 80 (313)
T 3mwb_A 6 AVTYTFLGPQGTFTEAALMQVPGAADATRIPCTNVNTALERVRA----GEADAAMVPIENSVEGGVTATLDA-IATGQEL 80 (313)
T ss_dssp -CEEEEESSTTSHHHHHHTTSTTGGGSEEEEESSHHHHHHHHHT----TSCSEEEEEEESCTTCCHHHHHHH-TTSSSCC
T ss_pred ccEEEEECCCCcHHHHHHHHHhhcCCccEEecCCHHHHHHHHHc----CCCCeeEEEEeecCCCccHHHHHH-hhCCCCe
Confidence 3458886 58887776643322223467789999999999999 7766444321 1 2222 3344579
Q ss_pred EEeCccccccceEeeecCCCc
Q 002309 769 RIVGQEFTKSGWGFAFPRDSP 789 (938)
Q Consensus 769 ~~~~~~~~~~~~~~~~~k~sp 789 (938)
+++++.+.+-..+++.++|..
T Consensus 81 ~IvgE~~l~I~h~Ll~~~g~~ 101 (313)
T 3mwb_A 81 RIIREALVPITFVLVARPGVE 101 (313)
T ss_dssp EEEEEEEEECCCEEEECTTCC
T ss_pred EEEEEEEEeeeEEEEcCCCCC
Confidence 999998888888888877654
No 370
>3t6k_A Response regulator receiver; flavodoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: MSE; 1.86A {Chloroflexus aurantiacus} SCOP: c.23.1.0
Probab=26.85 E-value=2.4e+02 Score=23.95 Aligned_cols=56 Identities=9% Similarity=-0.008 Sum_probs=37.1
Q ss_pred hHHHHHHHHhhcceEEEEEeecCCCCCCChhhHHHHHHHHhcCCceEEEEEeC--hhhHHHHHHHHHHc
Q 002309 180 GVSALNDKLAERRCRISYKSGIPPESGVNTGYVMDLLVKVALMESRVIVLHVS--PSLGFQVFSVAKYL 246 (938)
Q Consensus 180 ~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~lk~~~~~viv~~~~--~~~~~~~l~~a~~~ 246 (938)
....+...+++.|..+.. . .+....+..+.+..+++|++... ..+...+++..++.
T Consensus 16 ~~~~l~~~L~~~g~~v~~---~--------~~~~~al~~~~~~~~dlvl~D~~lp~~~g~~~~~~lr~~ 73 (136)
T 3t6k_A 16 VAEMLELVLRGAGYEVRR---A--------ASGEEALQQIYKNLPDALICDVLLPGIDGYTLCKRVRQH 73 (136)
T ss_dssp HHHHHHHHHHHTTCEEEE---E--------SSHHHHHHHHHHSCCSEEEEESCCSSSCHHHHHHHHHHS
T ss_pred HHHHHHHHHHHCCCEEEE---e--------CCHHHHHHHHHhCCCCEEEEeCCCCCCCHHHHHHHHHcC
Confidence 456677778888877642 1 12344566666778999999754 34577788887764
No 371
>2i6u_A Otcase, ornithine carbamoyltransferase; X-RAY crystallography, ornithine carbamyoltransferase, carbamoyl phosphate, L- norvaline; 2.20A {Mycobacterium tuberculosis} PDB: 2p2g_A
Probab=26.84 E-value=5.2e+02 Score=26.27 Aligned_cols=133 Identities=12% Similarity=0.080 Sum_probs=74.8
Q ss_pred eEEEEEEeeCCCcchhHHHHHHHHHHHHHhcCCCCCCCCEEEEEEccCCCChHHHHHHHHHHHhc--CcEEEEcCCChhH
Q 002309 31 VVNVGALFTLDSTIGRVAKIAIEEAVKDVNSNSSILHGTKLNITMQSSNCSGFIGMVEALRFMET--DIVAIIGPQCSTV 108 (938)
Q Consensus 31 ~i~IG~i~~~~~~~g~~~~~a~~~Av~~iN~~~~il~g~~l~~~~~D~~~~~~~a~~~a~~li~~--~V~aviGp~~s~~ 108 (938)
.-.|+.+|-..+. ..+.+|+.|+.++. |..+.+...++.-.-...+.-..+.++. .+.++=++ ..
T Consensus 39 gk~l~~lF~e~ST---RTR~SFe~A~~~LG-------g~~i~l~~~~ss~~kgEsl~DTarvls~~~D~iviR~~-~~-- 105 (307)
T 2i6u_A 39 PRGVAVIFDKNST---RTRFSFELGIAQLG-------GHAVVVDSGSTQLGRDETLQDTAKVLSRYVDAIVWRTF-GQ-- 105 (307)
T ss_dssp TCEEEEEESSCCS---HHHHHHHHHHHHTT-------CEEEEEEGGGSGGGGTCCHHHHHHHHHHHEEEEEEECS-SH--
T ss_pred CCEEEEEecCCCc---chHHHHHHHHHHcC-------CeEEEECCccccCCCCCCHHHHHHHHHHhCCEEEEecC-Ch--
Confidence 3568888876653 67999999999872 4445554444321111112222222222 23333343 22
Q ss_pred HHHHHHhhccCCccEEEcccCCCCCCCCCCCceEEecCCchHHHHHHHHHH---HhcC---CcEEEEEEEcCccccchHH
Q 002309 109 AHIVSYVSNELQVPLLSFGVTDPTLSSLQYPFFVRTTQSDSYQMTAVAEMV---SYYG---WNAVSVIFVDNEYGRNGVS 182 (938)
Q Consensus 109 ~~~va~~~~~~~iP~Is~~~~~~~l~~~~~p~~~r~~ps~~~~~~ai~~~l---~~~~---w~~vaii~~d~~~g~~~~~ 182 (938)
..+..+++..++|+|... + +...| .+++++++ +++| -.+|+++.+ .. .....
T Consensus 106 -~~~~~lA~~~~vPVINa~--~----~~~HP------------tQaLaDl~Ti~e~~g~l~gl~va~vGD--~~-~rva~ 163 (307)
T 2i6u_A 106 -ERLDAMASVATVPVINAL--S----DEFHP------------CQVLADLQTIAERKGALRGLRLSYFGD--GA-NNMAH 163 (307)
T ss_dssp -HHHHHHHHHCSSCEEESC--C----SSCCH------------HHHHHHHHHHHHHHSCCTTCEEEEESC--TT-SHHHH
T ss_pred -hHHHHHHhhCCCCEEcCC--C----CCcCc------------cHHHHHHHHHHHHhCCcCCeEEEEECC--CC-cCcHH
Confidence 334445566689999732 2 21222 57777774 3443 357777753 22 36778
Q ss_pred HHHHHHhhcceEEEEE
Q 002309 183 ALNDKLAERRCRISYK 198 (938)
Q Consensus 183 ~l~~~l~~~g~~v~~~ 198 (938)
.+..++...|.+|...
T Consensus 164 Sl~~~~~~~g~~v~~~ 179 (307)
T 2i6u_A 164 SLLLGGVTAGIHVTVA 179 (307)
T ss_dssp HHHHHHHHTTCEEEEE
T ss_pred HHHHHHHHCCCEEEEE
Confidence 8888888899887654
No 372
>4f2g_A Otcase 1, ornithine carbamoyltransferase 1; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Burkholderia thailandensis}
Probab=26.74 E-value=1.8e+02 Score=29.67 Aligned_cols=129 Identities=13% Similarity=0.144 Sum_probs=74.8
Q ss_pred EEEEEEeeCCCcchhHHHHHHHHHHHHHhcCCCCCCCCEEEEEEccCC---CCh-HHHHHHHHHHHhcCcEEEEcCCChh
Q 002309 32 VNVGALFTLDSTIGRVAKIAIEEAVKDVNSNSSILHGTKLNITMQSSN---CSG-FIGMVEALRFMETDIVAIIGPQCST 107 (938)
Q Consensus 32 i~IG~i~~~~~~~g~~~~~a~~~Av~~iN~~~~il~g~~l~~~~~D~~---~~~-~~a~~~a~~li~~~V~aviGp~~s~ 107 (938)
-.|+.+|...+. ..+.+|+.|+.++. |..+.+...++. +.+ ...++....+. .+.++=.+. .
T Consensus 46 k~la~lF~e~ST---RTR~SFE~A~~~LG-------g~~i~l~~~~ss~~kgEsl~DTarvls~~~--D~iviR~~~-~- 111 (309)
T 4f2g_A 46 RTLAMIFEKSST---RTRLSFEAGIFQLG-------GHAVFMSTRDTQLGRGEPVEDSAQVISRMV--DIIMIRTFE-Q- 111 (309)
T ss_dssp CEEEEEESSCCH---HHHHHHHHHHHHTT-------CEEEEECCSSCEETBEECHHHHHHHHHHHC--SEEEEECSC-H-
T ss_pred ceEEEEecCCCh---hhHhhHHHHHHHcC-------CeEEEcCcccccCCCCCCHHHHHHHHHHhC--CEEEEecCC-H-
Confidence 468889987763 67899999999873 333433333322 222 22222222221 333333443 2
Q ss_pred HHHHHHHhhccCCccEEEcccCCCCCCCCCCCceEEecCCchHHHHHHHHHH---Hh---cCCcEEEEEEEcCccccchH
Q 002309 108 VAHIVSYVSNELQVPLLSFGVTDPTLSSLQYPFFVRTTQSDSYQMTAVAEMV---SY---YGWNAVSVIFVDNEYGRNGV 181 (938)
Q Consensus 108 ~~~~va~~~~~~~iP~Is~~~~~~~l~~~~~p~~~r~~ps~~~~~~ai~~~l---~~---~~w~~vaii~~d~~~g~~~~ 181 (938)
..+..+++..+||+|... ++ ...| .+++++++ ++ +...+|+++.+ +....
T Consensus 112 --~~~~~lA~~~~vPVINag-~~-----~~HP------------tQaLaDl~Ti~e~~g~l~glkva~vGD----~~~va 167 (309)
T 4f2g_A 112 --DIIQRFAENSRVPVINGL-TN-----EYHP------------CQVLADIFTYYEHRGPIRGKTVAWVGD----ANNML 167 (309)
T ss_dssp --HHHHHHHHTCSSCEEEEE-CS-----SCCH------------HHHHHHHHHHHHHHSCCTTCEEEEESC----CCHHH
T ss_pred --HHHHHHHHhCCCCEEECC-CC-----ccCc------------HHHHHHHHHHHHHhCCCCCCEEEEECC----CcchH
Confidence 334556667789999743 21 1222 57777763 33 34568888763 24577
Q ss_pred HHHHHHHhhcceEEEEE
Q 002309 182 SALNDKLAERRCRISYK 198 (938)
Q Consensus 182 ~~l~~~l~~~g~~v~~~ 198 (938)
..+..++...|.++...
T Consensus 168 ~Sl~~~~~~~G~~v~~~ 184 (309)
T 4f2g_A 168 YTWIQAARILDFKLQLS 184 (309)
T ss_dssp HHHHHHHHHHTCEEEEE
T ss_pred HHHHHHHHHcCCEEEEE
Confidence 88888888889887654
No 373
>2j48_A Two-component sensor kinase; pseudo-receiver, circadian clock, transferase, response regulator, histidine protein kinase; NMR {Synechococcus elongatus}
Probab=26.49 E-value=2.1e+02 Score=23.10 Aligned_cols=57 Identities=11% Similarity=0.135 Sum_probs=36.5
Q ss_pred hHHHHHHHHhhcceEEEEEeecCCCCCCChhhHHHHHHHHhcCCceEEEEEeCh--hhHHHHHHHHHHcC
Q 002309 180 GVSALNDKLAERRCRISYKSGIPPESGVNTGYVMDLLVKVALMESRVIVLHVSP--SLGFQVFSVAKYLG 247 (938)
Q Consensus 180 ~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~lk~~~~~viv~~~~~--~~~~~~l~~a~~~g 247 (938)
....+.+.++..|..+... . +....+..+++..++++++.... .....++++.++..
T Consensus 13 ~~~~l~~~l~~~g~~v~~~---~--------~~~~~~~~l~~~~~dlii~d~~~~~~~~~~~~~~l~~~~ 71 (119)
T 2j48_A 13 AATVVCEMLTAAGFKVIWL---V--------DGSTALDQLDLLQPIVILMAWPPPDQSCLLLLQHLREHQ 71 (119)
T ss_dssp HHHHHHHHHHHTTCEEEEE---S--------CHHHHHHHHHHHCCSEEEEECSTTCCTHHHHHHHHHHTC
T ss_pred HHHHHHHHHHhCCcEEEEe---c--------CHHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHhcc
Confidence 4566777788888776421 1 22344455555679999987553 35677888887754
No 374
>3h5o_A Transcriptional regulator GNTR; transcription regulator, GNTR,chromobacterium violaceum, PSI, SGX, DNA-binding; 2.30A {Chromobacterium violaceum}
Probab=26.46 E-value=1.4e+02 Score=30.84 Aligned_cols=80 Identities=9% Similarity=0.044 Sum_probs=54.6
Q ss_pred CCcEEEEEEEc--CccccchHHHHHHHHhhcceEEEEEeecCCCCCCChhhHHHHHHHHhcCCceEEEEEeChhhHHHHH
Q 002309 163 GWNAVSVIFVD--NEYGRNGVSALNDKLAERRCRISYKSGIPPESGVNTGYVMDLLVKVALMESRVIVLHVSPSLGFQVF 240 (938)
Q Consensus 163 ~w~~vaii~~d--~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~lk~~~~~viv~~~~~~~~~~~l 240 (938)
.-+.|+++..+ +.|.......+.+++++.|..+..... . .+.......++.+...+.|.||+....... ..+
T Consensus 61 ~~~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~-~----~~~~~~~~~~~~l~~~~vdGiIi~~~~~~~-~~~ 134 (339)
T 3h5o_A 61 KSRTVLVLIPSLANTVFLETLTGIETVLDAAGYQMLIGNS-H----YDAGQELQLLRAYLQHRPDGVLITGLSHAE-PFE 134 (339)
T ss_dssp --CEEEEEESCSTTCTTHHHHHHHHHHHHHTTCEEEEEEC-T----TCHHHHHHHHHHHHTTCCSEEEEECSCCCT-THH
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeC-C----CChHHHHHHHHHHHcCCCCEEEEeCCCCCH-HHH
Confidence 44678888853 567778899999999999998764321 1 224555667788888899999987643322 456
Q ss_pred HHHHHcCC
Q 002309 241 SVAKYLGM 248 (938)
Q Consensus 241 ~~a~~~g~ 248 (938)
+.+.+.|.
T Consensus 135 ~~l~~~~i 142 (339)
T 3h5o_A 135 RILSQHAL 142 (339)
T ss_dssp HHHHHTTC
T ss_pred HHHhcCCC
Confidence 66666664
No 375
>1duv_G Octase-1, ornithine transcarbamoylase; enzyme-inhibitor complex, transferase; HET: PSQ; 1.70A {Escherichia coli} SCOP: c.78.1.1 c.78.1.1 PDB: 1akm_A* 2otc_A*
Probab=26.46 E-value=5.5e+02 Score=26.44 Aligned_cols=133 Identities=14% Similarity=0.111 Sum_probs=74.5
Q ss_pred eEEEEEEeeCCCcchhHHHHHHHHHHHHHhcCCCCCCCCEEEEEEccCCCChHHHHHHHHHHHhc--CcEEEEcCCChhH
Q 002309 31 VVNVGALFTLDSTIGRVAKIAIEEAVKDVNSNSSILHGTKLNITMQSSNCSGFIGMVEALRFMET--DIVAIIGPQCSTV 108 (938)
Q Consensus 31 ~i~IG~i~~~~~~~g~~~~~a~~~Av~~iN~~~~il~g~~l~~~~~D~~~~~~~a~~~a~~li~~--~V~aviGp~~s~~ 108 (938)
.-.|+.+|-..+. ..+.+|+.|+.++. |..+.+-..++.-.-...+.-..+.++. .+.++=++. ...
T Consensus 44 gk~la~lF~e~ST---RTR~SFE~A~~~LG-------g~~i~l~~~~ss~~kgEsl~DTarvLs~~~D~IviR~~~-~~~ 112 (333)
T 1duv_G 44 GKNIALIFEKDST---RTRCSFEVAAYDQG-------ARVTYLGPSGSQIGHKESIKDTARVLGRMYDGIQYRGYG-QEI 112 (333)
T ss_dssp TCEEEEEESSCCS---HHHHHHHHHHHHTT-------CEEEEECSSSSCBTTTBCHHHHHHHHTTTCSEEEEECSC-HHH
T ss_pred CCEEEEEecCCCc---cHHHHHHHHHHHcC-------CeEEEECCccccCcCCCcHHHHHHHHHHhCCEEEEEcCC-chH
Confidence 3468888877663 68999999999873 3334343333322112223333344444 333333543 333
Q ss_pred HHHHHHhhccCCccEEEcccCCCCCCCCCCCceEEecCCchHHHHHHHHHH---Hh-cC--C--cEEEEEEEcCccccch
Q 002309 109 AHIVSYVSNELQVPLLSFGVTDPTLSSLQYPFFVRTTQSDSYQMTAVAEMV---SY-YG--W--NAVSVIFVDNEYGRNG 180 (938)
Q Consensus 109 ~~~va~~~~~~~iP~Is~~~~~~~l~~~~~p~~~r~~ps~~~~~~ai~~~l---~~-~~--w--~~vaii~~d~~~g~~~ 180 (938)
. ..+++..+||+|.. .+ +...| .+++++++ ++ +| . .+|+++. |.. ...
T Consensus 113 ~---~~lA~~~~vPVINa--~~----~~~HP------------tQ~LaDl~Ti~e~~~g~~l~gl~ia~vG--D~~-~~v 168 (333)
T 1duv_G 113 V---ETLAEYASVPVWNG--LT----NEFHP------------TQLLADLLTMQEHLPGKAFNEMTLVYAG--DAR-NNM 168 (333)
T ss_dssp H---HHHHHHHSSCEEES--CC----SSCCH------------HHHHHHHHHHHHHSTTCCGGGCEEEEES--CTT-SHH
T ss_pred H---HHHHHhCCCCeEcC--CC----CCCCc------------hHHHHHHHHHHHHhcCCCCCCcEEEEEC--CCc-cch
Confidence 3 34445557999973 22 22222 57777773 45 56 2 4666654 322 356
Q ss_pred HHHHHHHHhhcceEEEEE
Q 002309 181 VSALNDKLAERRCRISYK 198 (938)
Q Consensus 181 ~~~l~~~l~~~g~~v~~~ 198 (938)
...+..++...|.+|...
T Consensus 169 a~Sl~~~~~~~G~~v~~~ 186 (333)
T 1duv_G 169 GNSMLEAAALTGLDLRLV 186 (333)
T ss_dssp HHHHHHHHHHHCCEEEEE
T ss_pred HHHHHHHHHHcCCEEEEE
Confidence 778888888889887654
No 376
>3out_A Glutamate racemase; structural genomics, center for structural genomics of infec diseases, csgid, MURI, cell envelope; HET: MSE DGL; 1.65A {Francisella tularensis subsp}
Probab=26.01 E-value=1e+02 Score=30.87 Aligned_cols=38 Identities=18% Similarity=0.211 Sum_probs=28.1
Q ss_pred HHHHHHhcCcEEEEcCCChhHHHHHHHhhccC-CccEEE
Q 002309 88 EALRFMETDIVAIIGPQCSTVAHIVSYVSNEL-QVPLLS 125 (938)
Q Consensus 88 ~a~~li~~~V~aviGp~~s~~~~~va~~~~~~-~iP~Is 125 (938)
.+..|.+.|+.+|+-+..+..+.++..+-+.. ++|+|.
T Consensus 61 ~~~~L~~~g~~~iVIACNTa~~~al~~lr~~~~~iPvig 99 (268)
T 3out_A 61 TAKFLIDQEVKAIIIACNTISAIAKDIVQEIAKAIPVID 99 (268)
T ss_dssp HHHHHHHTTCSEEEECCHHHHHHHHHHHHHHHTTSCEEE
T ss_pred HHHHHHHCCCCEEEEeCCChHHHHHHHHHHhcCCCCEEe
Confidence 34445555999999887777766667777777 899997
No 377
>3bbl_A Regulatory protein of LACI family; protein structure initiative II, PSI-II, NYSGXRC, transcript regulator, periplasmic binding protein; 2.35A {Chloroflexus aggregans}
Probab=25.70 E-value=90 Score=31.27 Aligned_cols=78 Identities=5% Similarity=-0.168 Sum_probs=49.6
Q ss_pred cEEEEEEEc------CccccchHHHHHHHHhhcceEEEEEeecCCCCCCChhhHHHHHHHHhcCCceEEEEEeChhhHHH
Q 002309 165 NAVSVIFVD------NEYGRNGVSALNDKLAERRCRISYKSGIPPESGVNTGYVMDLLVKVALMESRVIVLHVSPSLGFQ 238 (938)
Q Consensus 165 ~~vaii~~d------~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~lk~~~~~viv~~~~~~~~~~ 238 (938)
+.|+++..+ +.|.......+.+++++.|..+.... .. .+.......++.+...+.|.||+....... .
T Consensus 5 ~~Ig~i~~~~~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~---~~--~~~~~~~~~~~~l~~~~vdgiIi~~~~~~~-~ 78 (287)
T 3bbl_A 5 FMIGYSWTQTEPGQVNHILDQFLSSMVREAGAVNYFVLPFP---FS--EDRSQIDIYRDLIRSGNVDGFVLSSINYND-P 78 (287)
T ss_dssp CEEEECCCCCCTTCSCCTHHHHHHHHHHHHHHTTCEEEECC---CC--SSTTCCHHHHHHHHTTCCSEEEECSCCTTC-H
T ss_pred eEEEEEecccccccCChhHHHHHHHHHHHHHHcCCEEEEEe---CC--CchHHHHHHHHHHHcCCCCEEEEeecCCCc-H
Confidence 467777643 45667788889999999998876422 11 112233456777777889999886543222 4
Q ss_pred HHHHHHHcCC
Q 002309 239 VFSVAKYLGM 248 (938)
Q Consensus 239 ~l~~a~~~g~ 248 (938)
.++.+.+.|.
T Consensus 79 ~~~~l~~~~i 88 (287)
T 3bbl_A 79 RVQFLLKQKF 88 (287)
T ss_dssp HHHHHHHTTC
T ss_pred HHHHHHhcCC
Confidence 5666666564
No 378
>2hsg_A Glucose-resistance amylase regulator; CCPA, transcriptional regulator, transcription regulator; 2.50A {Bacillus megaterium} SCOP: a.35.1.5 c.93.1.1 PDB: 1rzr_G 2jcg_A 1zvv_A 3oqo_A* 3oqm_A* 3oqn_A*
Probab=25.54 E-value=1.1e+02 Score=31.55 Aligned_cols=79 Identities=14% Similarity=0.073 Sum_probs=52.4
Q ss_pred CcEEEEEEE--cCccccchHHHHHHHHhhcceEEEEEeecCCCCCCChhhHHHHHHHHhcCCceEEEEEeChhhHHHHHH
Q 002309 164 WNAVSVIFV--DNEYGRNGVSALNDKLAERRCRISYKSGIPPESGVNTGYVMDLLVKVALMESRVIVLHVSPSLGFQVFS 241 (938)
Q Consensus 164 w~~vaii~~--d~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~lk~~~~~viv~~~~~~~~~~~l~ 241 (938)
-..|+++.. ++.|.......+.+++++.|..+.... .. .+.......++.+...+.|.||+....... ..++
T Consensus 60 ~~~Ig~i~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~---~~--~~~~~~~~~~~~l~~~~vdgiI~~~~~~~~-~~~~ 133 (332)
T 2hsg_A 60 TTTVGVIIPDISNIFYAELARGIEDIATMYKYNIILSN---SD--QNQDKELHLLNNMLGKQVDGIIFMSGNVTE-EHVE 133 (332)
T ss_dssp CCEEEEEEC--CCSHHHHHHHHHHHHHHHHTCEEEEEE---CC--SHHHHHHHHHHHTSCCSSCCEEECCSSCCH-HHHH
T ss_pred CCEEEEEeCCCCCcHHHHHHHHHHHHHHHcCCEEEEEe---CC--CChHHHHHHHHHHHhCCCcEEEEecCCCCH-HHHH
Confidence 357888875 466777888999999999999876432 11 113334556777777889998887543332 4566
Q ss_pred HHHHcCC
Q 002309 242 VAKYLGM 248 (938)
Q Consensus 242 ~a~~~g~ 248 (938)
.+.+.|.
T Consensus 134 ~l~~~~i 140 (332)
T 2hsg_A 134 ELKKSPV 140 (332)
T ss_dssp HHTTSSS
T ss_pred HHHhCCC
Confidence 6655554
No 379
>3c3k_A Alanine racemase; structural genomics, protein structure initiative, NEW YORK research center for structural genomics, nysgxrc; 1.99A {Actinobacillus succinogenes}
Probab=25.11 E-value=2e+02 Score=28.46 Aligned_cols=78 Identities=10% Similarity=-0.006 Sum_probs=51.6
Q ss_pred CcEEEEEEE--cCccccchHHHHHHHHhhcceEEEEEeecCCCCCCChhhHHHHHHHHhcCCceEEEEEeChhhHHHHHH
Q 002309 164 WNAVSVIFV--DNEYGRNGVSALNDKLAERRCRISYKSGIPPESGVNTGYVMDLLVKVALMESRVIVLHVSPSLGFQVFS 241 (938)
Q Consensus 164 w~~vaii~~--d~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~lk~~~~~viv~~~~~~~~~~~l~ 241 (938)
-.+|+++.. ++.|.......+.+++++.|..+..... . .+.......++.+...+.|.||+...... ...++
T Consensus 8 ~~~Igvi~~~~~~~~~~~~~~gi~~~~~~~g~~~~~~~~---~--~~~~~~~~~~~~l~~~~vdgiI~~~~~~~-~~~~~ 81 (285)
T 3c3k_A 8 TGMLLVMVSNIANPFCAAVVKGIEKTAEKNGYRILLCNT---E--SDLARSRSCLTLLSGKMVDGVITMDALSE-LPELQ 81 (285)
T ss_dssp CCEEEEEESCTTSHHHHHHHHHHHHHHHHTTCEEEEEEC---T--TCHHHHHHHTHHHHTTCCSEEEECCCGGG-HHHHH
T ss_pred CCEEEEEeCCCCCchHHHHHHHHHHHHHHcCCEEEEEeC---C--CCHHHHHHHHHHHHhCCCCEEEEeCCCCC-hHHHH
Confidence 357888885 4567778888999999999998764321 1 12344456677777888999998754332 23455
Q ss_pred HHHHcCC
Q 002309 242 VAKYLGM 248 (938)
Q Consensus 242 ~a~~~g~ 248 (938)
.+. .|.
T Consensus 82 ~l~-~~i 87 (285)
T 3c3k_A 82 NII-GAF 87 (285)
T ss_dssp HHH-TTS
T ss_pred HHh-cCC
Confidence 554 453
No 380
>2qmw_A PDT, prephenate dehydratase; APC85812, prephenate dehydratase (PDT), staphylococcus aureu aureus MU50, structural genomics, PSI-2; 2.30A {Staphylococcus aureus subsp} SCOP: c.94.1.1 d.58.18.3
Probab=24.94 E-value=1.8e+02 Score=28.95 Aligned_cols=83 Identities=11% Similarity=0.022 Sum_probs=57.7
Q ss_pred CCeeEE--eCchHHHHHHHhcccccccccccCCHHHHHHHHhcCCCCCceEEEEecc---------hhHHHHHhcCCcEE
Q 002309 701 DPIGYQ--EGSFAEYYLSQELNISKSRLVALRTPEDYAKALKDGPGKGGVAAVVDER---------PYVELFLSSQCSFR 769 (938)
Q Consensus 701 ~~i~~~--~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~a~i~~~---------~~~~~~~~~~~~l~ 769 (938)
.+|+++ .|++.+....+.++.....++++.+.++.++++.+ |+.+.-+... ..++.+.. .+++
T Consensus 4 ~~iaylGp~Gtfs~~Aa~~~f~~~~~~~~~~~s~~~v~~aV~~----g~~d~gVvPiENS~~G~V~~t~DlL~~--~~l~ 77 (267)
T 2qmw_A 4 MQLYYLGPKGTFSYLACRQYFSENEATFQPKSNLFEVIKAVAD----DDTSIGVVPIENSIEGTINIVADALAQ--QDVF 77 (267)
T ss_dssp CEEEEECSTTSHHHHHHHHHCCTTSSEEEEESSHHHHHHHHHH----CSSEEEEEEEESCSSSCSHHHHHHHHT--TSSE
T ss_pred cEEEEECCCCcHHHHHHHHhhccCCceEEEcCCHHHHHHHHHc----CCCCEEEEEehhcCCCChHHHHHHhhc--CCcE
Confidence 457885 58887776654443221347889999999999999 7776555432 23344433 3699
Q ss_pred EeCccccccceEeeecCCCc
Q 002309 770 IVGQEFTKSGWGFAFPRDSP 789 (938)
Q Consensus 770 ~~~~~~~~~~~~~~~~k~sp 789 (938)
++++.+.+-..++...+|..
T Consensus 78 I~gE~~l~I~h~Ll~~~g~~ 97 (267)
T 2qmw_A 78 AHGEIRLDINFALYGNGTDS 97 (267)
T ss_dssp EEEEEEEECCEEEECCSSCC
T ss_pred EEEEEEEEeeeEEEecCCCC
Confidence 99999888889999888744
No 381
>3s5p_A Ribose 5-phosphate isomerase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.30A {Giardia lamblia}
Probab=24.91 E-value=2.7e+02 Score=25.31 Aligned_cols=61 Identities=10% Similarity=-0.039 Sum_probs=33.8
Q ss_pred cCccccchHHHHHHHHhhcceEEEEEeecCCCCCCChhhHHHHHHHHhcCCce-EEEEEeCh
Q 002309 173 DNEYGRNGVSALNDKLAERRCRISYKSGIPPESGVNTGYVMDLLVKVALMESR-VIVLHVSP 233 (938)
Q Consensus 173 d~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~lk~~~~~-viv~~~~~ 233 (938)
.|..|.+..+.+.+.|++.|.+|..............+-.....+.+.+...+ .|++++++
T Consensus 28 sDhaG~~lK~~i~~~L~~~G~eV~D~G~~~~~~~dYPd~a~~va~~V~~g~~d~GIliCGTG 89 (166)
T 3s5p_A 28 SDHGGRDLRMFLQQRASAHGYEVMDLGTESDASVDYPDFAKIGCEAVTSGRADCCILVCGTG 89 (166)
T ss_dssp ECGGGHHHHHHHHHHHHHTTCEEEEEEC--------CHHHHHHHHHHHTTSCSEEEEEESSS
T ss_pred ECchHHHHHHHHHHHHHHCCCEEEEcCCCCCCCCCHHHHHHHHHHHHHcCCCcEEEEEcCCc
Confidence 45668889999999999999999876555433111111222233344444454 45555554
No 382
>1oi7_A Succinyl-COA synthetase alpha chain; SCS, ligase, riken structural genomics/proteomics initiative, RSGI, structural genomics; 1.23A {Thermus thermophilus} SCOP: c.2.1.8 c.23.4.1
Probab=24.74 E-value=2.6e+02 Score=28.24 Aligned_cols=133 Identities=13% Similarity=0.004 Sum_probs=78.4
Q ss_pred ChHHHHHHHHHHHhcCcE-EEEcCC--ChhHHHHHHHhhccCCccEEEcccCCCCCCCCCCCceEEecCCchHHHHHHHH
Q 002309 81 SGFIGMVEALRFMETDIV-AIIGPQ--CSTVAHIVSYVSNELQVPLLSFGVTDPTLSSLQYPFFVRTTQSDSYQMTAVAE 157 (938)
Q Consensus 81 ~~~~a~~~a~~li~~~V~-aviGp~--~s~~~~~va~~~~~~~iP~Is~~~~~~~l~~~~~p~~~r~~ps~~~~~~ai~~ 157 (938)
.+..+...+.++++.++. +|+... .......+...++..++.++.+.+.. +-... ....-+.|.
T Consensus 73 p~~~~~~~~~ea~~~Gi~~vVi~t~G~~~~~~~~l~~~a~~~gi~vigPNc~G--ii~~~-~~~~~~~~~---------- 139 (288)
T 1oi7_A 73 PAPAAADAALEAAHAGIPLIVLITEGIPTLDMVRAVEEIKALGSRLIGGNCPG--IISAE-ETKIGIMPG---------- 139 (288)
T ss_dssp CHHHHHHHHHHHHHTTCSEEEECCSCCCHHHHHHHHHHHHHHTCEEEESSSCE--EEETT-TEEEESSCG----------
T ss_pred CHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHcCCEEEeCCCCe--EEcCC-CceeEEccc----------
Confidence 456666677778888877 455432 22334577888888899888765432 11110 011111121
Q ss_pred HHHhcCCcEEEEEEEcCccccchHHHHHHHHhhcceEEEEEeecCCCCCCC-hhhHHHHHHHHhc-CCceEEEEEeChh
Q 002309 158 MVSYYGWNAVSVIFVDNEYGRNGVSALNDKLAERRCRISYKSGIPPESGVN-TGYVMDLLVKVAL-MESRVIVLHVSPS 234 (938)
Q Consensus 158 ~l~~~~w~~vaii~~d~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~-~~d~~~~l~~lk~-~~~~viv~~~~~~ 234 (938)
..+.--+|++|.+... ....+.+.+.+.|+-+.....+-.. .. ..++.+.|+.+.+ .++++|+++....
T Consensus 140 --~~~~~G~va~vsqSG~----l~~~~~~~~~~~g~G~s~~vs~G~~--~~~~~~~~d~l~~~~~D~~t~~I~l~~E~~ 210 (288)
T 1oi7_A 140 --HVFKRGRVGIISRSGT----LTYEAAAALSQAGLGTTTTVGIGGD--PVIGTTFKDLLPLFNEDPETEAVVLIGEIG 210 (288)
T ss_dssp --GGCCEEEEEEEESCHH----HHHHHHHHHHHTTCCEEEEEECCSS--SCCSSCHHHHHHHHHTCTTCCEEEEEECSS
T ss_pred --CCCCCCCEEEEECCHH----HHHHHHHHHHhCCCCEEEEEeeCCC--cCCCCCHHHHHHHHhcCCCCCEEEEEEeeC
Confidence 1233457999986665 3455666777777666555444433 21 3467777777754 6899999998853
No 383
>1xah_A Sadhqs, 3-dehydroquinate synthase; shikimate pathway, aromatic amino acid biosynthesis, open form, form B, domain movement, cyclase; HET: NAD; 2.20A {Staphylococcus aureus} PDB: 1xag_A* 1xai_A* 1xaj_A* 1xal_A*
Probab=24.73 E-value=1.9e+02 Score=30.32 Aligned_cols=110 Identities=5% Similarity=-0.040 Sum_probs=61.2
Q ss_pred CceEEecCCchHHHHHHHHHHHhcCCcEEEEEEEcCccccchHHHHHHHHhhcc-eEEEEEeecCCCCCCChhhHHHHHH
Q 002309 139 PFFVRTTQSDSYQMTAVAEMVSYYGWNAVSVIFVDNEYGRNGVSALNDKLAERR-CRISYKSGIPPESGVNTGYVMDLLV 217 (938)
Q Consensus 139 p~~~r~~ps~~~~~~ai~~~l~~~~w~~vaii~~d~~~g~~~~~~l~~~l~~~g-~~v~~~~~~~~~~~~~~~d~~~~l~ 217 (938)
|+-+...+.... .+.++++.+ +++.+|++...+.. ..+.+.+.+ +.| +.+..-....+. .+.+.+...++
T Consensus 11 ~~~i~~G~g~l~---~l~~~l~~~--~~~liVtd~~~~~~-~~~~v~~~L-~~g~~~~~~~~~~e~~--p~~~~v~~~~~ 81 (354)
T 1xah_A 11 NYPIYVEHGAIK---YIGTYLNQF--DQSFLLIDEYVNQY-FANKFDDIL-SYENVHKVIIPAGEKT--KTFEQYQETLE 81 (354)
T ss_dssp CCEEEEETTGGG---HHHHHHTTC--SCEEEEEEHHHHHH-HHHHHC-------CEEEEEECSGGGG--CSHHHHHHHHH
T ss_pred CccEEEcCChHH---HHHHHHHhc--CeEEEEECCcHHHH-HHHHHHHHH-hcCCeEEEEECCCCCC--CCHHHHHHHHH
Confidence 555556555332 244556655 88999986554333 566777777 666 332111112222 24677888888
Q ss_pred HHhcCCc---eEEEEEeCh--hhHHHHHHHHHHcCCCCCCeEEEEeCc
Q 002309 218 KVALMES---RVIVLHVSP--SLGFQVFSVAKYLGMMGNGYVWIATDW 260 (938)
Q Consensus 218 ~lk~~~~---~viv~~~~~--~~~~~~l~~a~~~g~~~~~~~wi~~~~ 260 (938)
.+++.++ ++||-.+.+ -++..++......| ..++-|-|..
T Consensus 82 ~~~~~~~~r~d~iIavGGGsv~D~ak~vA~~~~rg---ip~i~IPTT~ 126 (354)
T 1xah_A 82 YILSHHVTRNTAIIAVGGGATGDFAGFVAATLLRG---VHFIQVPTTI 126 (354)
T ss_dssp HHHTTCCCTTCEEEEEESHHHHHHHHHHHHHBTTC---CEEEEEECST
T ss_pred HHHHcCCCCCceEEEECChHHHHHHHHHHHHhccC---CCEEEECCcc
Confidence 8888888 888876654 46666766655434 3566666653
No 384
>2q9u_A A-type flavoprotein; flavodoxin like, beta lactamase like, oxidoreductase; HET: FMN; 1.90A {Giardia intestinalis}
Probab=24.49 E-value=3.3e+02 Score=28.92 Aligned_cols=87 Identities=10% Similarity=0.079 Sum_probs=48.7
Q ss_pred CCcEEEEEEEc-CccccchHHHHHHHHhhcceEEEEEeecCCCCCCChhhHHHHHHHHhcCCceEEEEEeC------hhh
Q 002309 163 GWNAVSVIFVD-NEYGRNGVSALNDKLAERRCRISYKSGIPPESGVNTGYVMDLLVKVALMESRVIVLHVS------PSL 235 (938)
Q Consensus 163 ~w~~vaii~~d-~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~lk~~~~~viv~~~~------~~~ 235 (938)
.++++.++|.. +...+..++.+.+.+.+.|.++.... +. ..+......++. .+|.|++.+. +..
T Consensus 255 ~~~kv~iiy~S~~GnT~~la~~i~~~l~~~g~~v~~~~-l~------~~~~~~~~~~l~--~~D~iiigsP~y~~~~~~~ 325 (414)
T 2q9u_A 255 CQKKVTVVLDSMYGTTHRMALALLDGARSTGCETVLLE-MT------SSDITKVALHTY--DSGAVAFASPTLNNTMMPS 325 (414)
T ss_dssp CCSEEEEEECCSSSHHHHHHHHHHHHHHHTTCEEEEEE-GG------GCCHHHHHHHHH--TCSEEEEECCCBTTBCCHH
T ss_pred cCCeEEEEEECCCchHHHHHHHHHHHHHhCCCeEEEEE-cC------cCCHHHHHHHHH--hCCEEEEEcCccCcCchHH
Confidence 36788888833 22233456777777877777654322 21 223344444554 4777777655 245
Q ss_pred HHHHHHHHHHcCC-CCCCeEEEEe
Q 002309 236 GFQVFSVAKYLGM-MGNGYVWIAT 258 (938)
Q Consensus 236 ~~~~l~~a~~~g~-~~~~~~wi~~ 258 (938)
...++.......+ .++....+.+
T Consensus 326 ~k~fld~l~~~~~~~~K~~~~~~t 349 (414)
T 2q9u_A 326 VAAALNYVRGLTLIKGKPAFAFGA 349 (414)
T ss_dssp HHHHHHHHHHHTTTTTSBEEEEEE
T ss_pred HHHHHHHHHhhcccCCCEEEEEEe
Confidence 6667777665444 3444444444
No 385
>3muq_A Uncharacterized conserved protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 2.05A {Vibrio parahaemolyticus}
Probab=24.20 E-value=40 Score=33.19 Aligned_cols=75 Identities=12% Similarity=0.022 Sum_probs=49.6
Q ss_pred EeeeHHHHHHHHHhCCCCccEEEEecCCCCCCCChhHHHHhhhcceecEEeccEeeecCce---eeeeeccceecccEEE
Q 002309 491 QGFCIDVFTAAVNLLPYAVPYQFVAFGDGHKNPSYTQLVDSITTGVFDAVVGDITIVTNRT---KIVDFSQPYAASGLVV 567 (938)
Q Consensus 491 ~G~~~dll~~la~~l~f~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~D~~~~~~~~t~~r~---~~v~fs~p~~~~~~~~ 567 (938)
.|+.-+|+..+.++.+.++++.+ +.-..++.++.+|.+|+++..-....+.. ....-..|+....+++
T Consensus 18 ~~ll~~L~~~Fek~~gv~V~~~~---------~gSg~ll~qi~~G~aDv~isa~~~~~~~l~~~g~~~~~~~~a~N~lVl 88 (237)
T 3muq_A 18 SGLLDYLLPQFEKDTGYKVDVIA---------AGTGKALKMGENGDVDLVMTHAPKAEGTFVEKGYGVLPRKLMYNDFVI 88 (237)
T ss_dssp HTHHHHHHHHHHHHHCCEEEEEE---------ECHHHHHHHHHTTSSSEEEECCHHHHHHHHHTTSEEEEEEEEEEEEEE
T ss_pred hhHHHHHHHHHHHHhCceEEEEE---------cChHHHHHHHhcCCCCEEEecCchhHHHHHhcCCccccEEEEeCCEEE
Confidence 46677888888888786544443 33567889999999999875433222111 1112246888899999
Q ss_pred EEeccCC
Q 002309 568 VVPFRKL 574 (938)
Q Consensus 568 lv~~~~~ 574 (938)
++|+.++
T Consensus 89 V~P~~~P 95 (237)
T 3muq_A 89 VGPKADP 95 (237)
T ss_dssp EECTTCT
T ss_pred EEeCCCh
Confidence 9988763
No 386
>2xwv_A Sialic acid-binding periplasmic protein SIAP; transport protein, trap, sugar transport; HET: SLB; 1.05A {Haemophilus influenzae} PDB: 2xxk_A* 2xa5_A* 2wyp_A* 2wx9_A* 2xwo_A* 2xwk_A* 2v4c_A* 2wyk_A* 2xwi_A* 3b50_A* 2cey_A 2cex_A
Probab=24.10 E-value=1e+02 Score=31.72 Aligned_cols=88 Identities=11% Similarity=0.069 Sum_probs=54.2
Q ss_pred CCCCChHHhhhCCCCeeEEeCchHHHHHHHhcccccccccccCCHHHHHHHHhcCCCCCceEEEEecchhHHHH-HhcCC
Q 002309 688 SPINGIESLRKSDDPIGYQEGSFAEYYLSQELNISKSRLVALRTPEDYAKALKDGPGKGGVAAVVDERPYVELF-LSSQC 766 (938)
Q Consensus 688 ~~i~s~~dL~~~~~~i~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~a~i~~~~~~~~~-~~~~~ 766 (938)
.+|++++||. |++|.+.........+ +..+.. .++ -...|...+|++ |.+|+.....+.+.-. ..+-+
T Consensus 133 ~pI~s~~Dlk--GlKiRv~~~~~~~~~~-~alGa~---pv~-m~~~Evy~ALq~----G~vDg~~~~~~~~~~~~~~ev~ 201 (312)
T 2xwv_A 133 RAINSIADMK--GLKLRVPNAATNLAYA-KYVGAS---PTP-MAFSEVYLALQT----NAVDGQENPLAAVQAQKFYEVQ 201 (312)
T ss_dssp SCCCSGGGGT--TCEEEECSCHHHHHHH-HHHTCE---EEE-CCGGGHHHHHHT----TSSSEEEEEHHHHHHTTGGGSC
T ss_pred CCcCCHHHhC--CCEEEeCCCHHHHHHH-HHcCCe---eee-cCHHHHHHHHHc----CCcceEeccHHHHhhcchhhcc
Confidence 6899999999 9999887644344555 445533 122 256778999999 8999998876655221 12234
Q ss_pred cEEEeCccccccceEeeecCC
Q 002309 767 SFRIVGQEFTKSGWGFAFPRD 787 (938)
Q Consensus 767 ~l~~~~~~~~~~~~~~~~~k~ 787 (938)
++...... ......+.+.+.
T Consensus 202 ky~~~~~~-~~~~~~~~~n~~ 221 (312)
T 2xwv_A 202 KFLAMTNH-ILNDQLYLVSNE 221 (312)
T ss_dssp SEEECCCC-CEEEEEEEEEHH
T ss_pred ceEEecCc-cccceEEEEeHH
Confidence 55544332 223334566653
No 387
>4h31_A Otcase, ornithine carbamoyltransferase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: PE5; 1.70A {Vibrio vulnificus} PDB: 3upd_A*
Probab=23.86 E-value=6.3e+02 Score=26.27 Aligned_cols=132 Identities=20% Similarity=0.125 Sum_probs=73.5
Q ss_pred EEEEEEeeCCCcchhHHHHHHHHHHHHHhcCCCCCCCCEEEEEEccCCCChHHHHHHHHHHHhc--CcEEEEcCCChhHH
Q 002309 32 VNVGALFTLDSTIGRVAKIAIEEAVKDVNSNSSILHGTKLNITMQSSNCSGFIGMVEALRFMET--DIVAIIGPQCSTVA 109 (938)
Q Consensus 32 i~IG~i~~~~~~~g~~~~~a~~~Av~~iN~~~~il~g~~l~~~~~D~~~~~~~a~~~a~~li~~--~V~aviGp~~s~~~ 109 (938)
-.|+.+|-..+. ..+.+|+.|+.++. |..+.+-..++.-.-...+.-+.+.++. .+.++=++. .
T Consensus 71 K~la~lF~epST---RTR~SFE~A~~~LG-------g~vi~l~~~~ss~~kgEsl~DTarvLs~~~D~IviR~~~----~ 136 (358)
T 4h31_A 71 KNIALIFEKAST---RTRCAFEVAAFDQG-------AQVTYIGPSGSQIGDKESMKDTARVLGRMYDGIQYRGFG----Q 136 (358)
T ss_dssp CEEEEEESSCCS---HHHHHHHHHHHHTT-------CEEEEECSSSSCBTTTBCHHHHHHHHHHHCSEEEEECSC----H
T ss_pred CEEEEEeCCCCh---hhHHHHHHHHHHcC-------CeEEECCcccccccCccchhHHHHHhhccCceeEecccc----h
Confidence 357888877653 57899999998872 3334333333321111112222222222 333333433 2
Q ss_pred HHHHHhhccCCccEEEcccCCCCCCCCCCCceEEecCCchHHHHHHHHHH---HhcCC-----cEEEEEEEcCccccchH
Q 002309 110 HIVSYVSNELQVPLLSFGVTDPTLSSLQYPFFVRTTQSDSYQMTAVAEMV---SYYGW-----NAVSVIFVDNEYGRNGV 181 (938)
Q Consensus 110 ~~va~~~~~~~iP~Is~~~~~~~l~~~~~p~~~r~~ps~~~~~~ai~~~l---~~~~w-----~~vaii~~d~~~g~~~~ 181 (938)
..+..+++...||+|. +-+ +...| .+++++++ +++++ .+|++|. |.. ....
T Consensus 137 ~~~~~la~~s~vPVIN-G~g-----~~~HP------------tQaL~Dl~Ti~e~~~~~~l~gl~ia~vG--D~~-~~va 195 (358)
T 4h31_A 137 AIVEELGAFAGVPVWN-GLT-----DEFHP------------TQILADFLTMLEHSQGKALADIQFAYLG--DAR-NNVG 195 (358)
T ss_dssp HHHHHHHHHSSSCEEE-SCC-----SSCCH------------HHHHHHHHHHHHTTTTCCGGGCEEEEES--CTT-SHHH
T ss_pred hHHHHhhhhccCceEC-CCC-----cCCCc------------hHHHHHHHHHHHHhcCCCcCceEEEecC--CCC-cccc
Confidence 3445566777899997 222 21222 57888874 34553 3677664 322 2567
Q ss_pred HHHHHHHhhcceEEEEE
Q 002309 182 SALNDKLAERRCRISYK 198 (938)
Q Consensus 182 ~~l~~~l~~~g~~v~~~ 198 (938)
..+..++...|.+|...
T Consensus 196 ~S~~~~~~~~g~~v~~~ 212 (358)
T 4h31_A 196 NSLMVGAAKMGMDIRLV 212 (358)
T ss_dssp HHHHHHHHHHTCEEEEE
T ss_pred hHHHHHHHhcCceEEEe
Confidence 78888888889887654
No 388
>3hly_A Flavodoxin-like domain; Q5MZP6_SYNP6, flavoprotein, DFA1, SNR135D, NESG, structural genomics, PSI-2; 2.40A {Synechococcus elongatus pcc 6301}
Probab=23.80 E-value=1.3e+02 Score=27.10 Aligned_cols=83 Identities=16% Similarity=0.167 Sum_probs=45.0
Q ss_pred EEEEEEEcCcccc--chHHHHHHHHhhcceEEEEEeecCCCCCCChhhHHHHHHHHhcCCceEEEEEeCh--hhH--HHH
Q 002309 166 AVSVIFVDNEYGR--NGVSALNDKLAERRCRISYKSGIPPESGVNTGYVMDLLVKVALMESRVIVLHVSP--SLG--FQV 239 (938)
Q Consensus 166 ~vaii~~d~~~g~--~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~lk~~~~~viv~~~~~--~~~--~~~ 239 (938)
++.|+|. +.+|. ..++.+.+.+.+.|+++... .+. ..+....+.++. +.|.|++.++. ... ..+
T Consensus 2 kv~IvY~-S~tGnT~~~A~~ia~~l~~~g~~v~~~-~~~------~~~~~~~~~~~~--~~d~ii~Gspty~g~~p~~~f 71 (161)
T 3hly_A 2 SVLIGYL-SDYGYSDRLSQAIGRGLVKTGVAVEMV-DLR------AVDPQELIEAVS--SARGIVLGTPPSQPSEAVATA 71 (161)
T ss_dssp CEEEEEC-TTSTTHHHHHHHHHHHHHHTTCCEEEE-ETT------TCCHHHHHHHHH--HCSEEEEECCBSSCCHHHHHH
T ss_pred EEEEEEE-CCChHHHHHHHHHHHHHHhCCCeEEEE-ECC------CCCHHHHHHHHH--hCCEEEEEcCCcCCchhHHHH
Confidence 4778883 33443 55788888888888765422 222 223444445554 36677776542 111 457
Q ss_pred HHHHHHcCCCCCCeEEEEe
Q 002309 240 FSVAKYLGMMGNGYVWIAT 258 (938)
Q Consensus 240 l~~a~~~g~~~~~~~wi~~ 258 (938)
+.......+.+.....+.+
T Consensus 72 l~~l~~~~l~gk~v~~fgs 90 (161)
T 3hly_A 72 LSTIFAAAHNKQAIGLFDS 90 (161)
T ss_dssp HHHHHHHCCTTSEEEEECC
T ss_pred HHHHHhhhhCCCEEEEEEc
Confidence 7666554444433334443
No 389
>3bil_A Probable LACI-family transcriptional regulator; structural genomics, unknown function, PSI-2, protein structure initiative; 2.50A {Corynebacterium glutamicum atcc 13032}
Probab=23.74 E-value=1.3e+02 Score=31.28 Aligned_cols=78 Identities=13% Similarity=0.067 Sum_probs=51.6
Q ss_pred cEEEEEEEc--CccccchHHHHHHHHhhcceEEEEEeecCCCCCCChhhHHHHHHHHhcCCceEEEEEeChhhHHHHHHH
Q 002309 165 NAVSVIFVD--NEYGRNGVSALNDKLAERRCRISYKSGIPPESGVNTGYVMDLLVKVALMESRVIVLHVSPSLGFQVFSV 242 (938)
Q Consensus 165 ~~vaii~~d--~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~lk~~~~~viv~~~~~~~~~~~l~~ 242 (938)
+.|+++..+ +.|.......+.+++++.|..+..... . .+.......++.+...+.|.||+...... ...++.
T Consensus 67 ~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~---~--~~~~~~~~~~~~l~~~~vdgiI~~~~~~~-~~~~~~ 140 (348)
T 3bil_A 67 NTIGVIVPSLINHYFAAMVTEIQSTASKAGLATIITNS---N--EDATTMSGSLEFLTSHGVDGIICVPNEEC-ANQLED 140 (348)
T ss_dssp -CEEEEESCSSSHHHHHHHHHHHHHHHHTTCCEEEEEC---T--TCHHHHHHHHHHHHHTTCSCEEECCCGGG-HHHHHH
T ss_pred CEEEEEeCCCCCcHHHHHHHHHHHHHHHcCCEEEEEeC---C--CCHHHHHHHHHHHHhCCCCEEEEeCCCCC-hHHHHH
Confidence 468888853 556777888999999999988764321 1 12344556777777788999888765433 245666
Q ss_pred HHHcCC
Q 002309 243 AKYLGM 248 (938)
Q Consensus 243 a~~~g~ 248 (938)
+.+.|+
T Consensus 141 l~~~~i 146 (348)
T 3bil_A 141 LQKQGM 146 (348)
T ss_dssp HHHC-C
T ss_pred HHhCCC
Confidence 666564
No 390
>3qbe_A 3-dehydroquinate synthase; shikimate pathway, mycobacte tuberculosis, nicotinamide adenine dinucleotide (NAD)-depen enzyme; 2.07A {Mycobacterium tuberculosis} PDB: 3qbd_A
Probab=23.66 E-value=3.4e+02 Score=28.49 Aligned_cols=111 Identities=13% Similarity=0.060 Sum_probs=67.4
Q ss_pred CCceEEecCCchHHHHHHHHHHHhcCCcEEEEEEEcCccccchHHHHHHHHhhcceEEEEEeecCCCC-CCChhhHHHHH
Q 002309 138 YPFFVRTTQSDSYQMTAVAEMVSYYGWNAVSVIFVDNEYGRNGVSALNDKLAERRCRISYKSGIPPES-GVNTGYVMDLL 216 (938)
Q Consensus 138 ~p~~~r~~ps~~~~~~ai~~~l~~~~w~~vaii~~d~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~-~~~~~d~~~~l 216 (938)
.||-+...+.... .+.++++.. +++.+|++...+. ..+.+.+.|++.|+.+... .++... ..+.+.+...+
T Consensus 22 ~~~~I~~G~g~l~---~l~~~l~~~--~rvlIVtd~~v~~--~~~~v~~~L~~~g~~~~~~-~~~~gE~~kt~~~v~~~~ 93 (368)
T 3qbe_A 22 PPYPVVIGTGLLD---ELEDLLADR--HKVAVVHQPGLAE--TAEEIRKRLAGKGVDAHRI-EIPDAEAGKDLPVVGFIW 93 (368)
T ss_dssp SCEEEEEESCCHH---HHHHHHTTC--SEEEEEECGGGHH--HHHHHHHHHHHTTCEEEEE-ECCSGGGGGBHHHHHHHH
T ss_pred CCceEEEcCCHHH---HHHHHHHcC--CEEEEEECccHHH--HHHHHHHHHHhcCCcceEE-EeCCCCCCCCHHHHHHHH
Confidence 3666666665443 345555553 8999999666544 3678899999999876432 233220 01245566666
Q ss_pred HHHhcC---CceEEEEEeCh--hhHHHHHHHHHHcCCCCCCeEEEEeC
Q 002309 217 VKVALM---ESRVIVLHVSP--SLGFQVFSVAKYLGMMGNGYVWIATD 259 (938)
Q Consensus 217 ~~lk~~---~~~viv~~~~~--~~~~~~l~~a~~~g~~~~~~~wi~~~ 259 (938)
+.+++. +.++||..+.+ .+...++......| ..++-|-|.
T Consensus 94 ~~l~~~~~~r~d~IIavGGGsv~D~ak~~Aa~~~rg---ip~i~IPTT 138 (368)
T 3qbe_A 94 EVLGRIGIGRKDALVSLGGGAATDVAGFAAATWLRG---VSIVHLPTT 138 (368)
T ss_dssp HHHHHHTCCTTCEEEEEESHHHHHHHHHHHHHGGGC---CEEEEEECS
T ss_pred HHHHHcCCCCCcEEEEECChHHHHHHHHHHHHhccC---CcEEEECCC
Confidence 666654 46888887665 36666666555445 345556554
No 391
>2zay_A Response regulator receiver protein; structural genomics, NYSGXRC, target 11006U, protein structure initiative; 2.00A {Desulfuromonas acetoxidans}
Probab=23.66 E-value=2.1e+02 Score=24.53 Aligned_cols=55 Identities=13% Similarity=0.160 Sum_probs=35.4
Q ss_pred hHHHHHHHHhhcceEEEEEeecCCCCCCChhhHHHHHHHHhcCCceEEEEEeC--hhhHHHHHHHHHH
Q 002309 180 GVSALNDKLAERRCRISYKSGIPPESGVNTGYVMDLLVKVALMESRVIVLHVS--PSLGFQVFSVAKY 245 (938)
Q Consensus 180 ~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~lk~~~~~viv~~~~--~~~~~~~l~~a~~ 245 (938)
....+...+++.|..|.. .. +....+..+++..+++|++... ..+...++++.++
T Consensus 20 ~~~~l~~~L~~~g~~v~~---~~--------~~~~a~~~l~~~~~dlii~d~~l~~~~g~~~~~~l~~ 76 (147)
T 2zay_A 20 ALAASISALSQEGFDIIQ---CG--------NAIEAVPVAVKTHPHLIITEANMPKISGMDLFNSLKK 76 (147)
T ss_dssp GGHHHHHHHHHHTEEEEE---ES--------SHHHHHHHHHHHCCSEEEEESCCSSSCHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCeEEE---eC--------CHHHHHHHHHcCCCCEEEEcCCCCCCCHHHHHHHHHc
Confidence 456667777777876642 11 2334455555567999999754 3456778888876
No 392
>2vvr_A Ribose-5-phosphate isomerase B; RPIB, carbohydrate metabolism, pentose phosphate pathway; 2.10A {Escherichia coli} PDB: 1nn4_A
Probab=23.48 E-value=3.4e+02 Score=24.20 Aligned_cols=30 Identities=17% Similarity=0.057 Sum_probs=24.2
Q ss_pred cCccccchHHHHHHHHhhcceEEEEEeecC
Q 002309 173 DNEYGRNGVSALNDKLAERRCRISYKSGIP 202 (938)
Q Consensus 173 d~~~g~~~~~~l~~~l~~~g~~v~~~~~~~ 202 (938)
.|.-|....+.+.+.|++.|.+|.....+.
T Consensus 8 sDhaG~~lK~~i~~~L~~~G~eV~D~G~~~ 37 (149)
T 2vvr_A 8 CDHVGFILKHEIVAHLVERGVEVIDKGTWS 37 (149)
T ss_dssp ECTTGGGGHHHHHHHHHHTTCEEEECCCCS
T ss_pred eCchhHHHHHHHHHHHHHCCCEEEEeCCCC
Confidence 455688899999999999999988655444
No 393
>2qip_A Protein of unknown function VPA0982; APC85975, vibrio parahaemolyticus RIMD 2210633, STR genomics, PSI-2, protein structure initiative; 1.48A {Vibrio parahaemolyticus}
Probab=23.43 E-value=3.4e+02 Score=24.53 Aligned_cols=95 Identities=6% Similarity=-0.153 Sum_probs=56.3
Q ss_pred HHHHHHHHhcCCcEEEEEEEcCccccchHHHHHHHHhhcceEEEEEee--cCCCCCCChhhHHHHHHHHh-cCCceEEEE
Q 002309 153 TAVAEMVSYYGWNAVSVIFVDNEYGRNGVSALNDKLAERRCRISYKSG--IPPESGVNTGYVMDLLVKVA-LMESRVIVL 229 (938)
Q Consensus 153 ~ai~~~l~~~~w~~vaii~~d~~~g~~~~~~l~~~l~~~g~~v~~~~~--~~~~~~~~~~d~~~~l~~lk-~~~~~viv~ 229 (938)
..+.+.+...+--..+..|- ...+......+.++|.+.|+++...-. +..+......|..-.+.-+. ....+.+++
T Consensus 36 ~~l~~~~~~~g~l~~~~~Y~-~~~~~~~~~~~~~~L~~~g~~v~~~p~~~~~~~~~k~~~Dv~laiD~~~~a~~~d~~vL 114 (165)
T 2qip_A 36 NQFWYVATQEKEVVSAKAYA-IASNDPKQRQFHHILRGVGFEVMLKPYIQRRDGSAKGDWDVGITLDAIEIAPDVDRVIL 114 (165)
T ss_dssp HHHHHHHTTTEEEEEEEEEE-CCCCCHHHHHHHHHHHHHTCEEEECCCCCCSSCCCSCCCHHHHHHHHHHHGGGCSEEEE
T ss_pred HHHHHHHhcCCEEEEEEEEE-ccCCchhHHHHHHHHHHCCcEEEEEeeeeccCCccCCCccHHHHHHHHHhhccCCEEEE
Confidence 45555555555444455663 222324567788999999998764321 11111123444433333221 145788888
Q ss_pred EeChhhHHHHHHHHHHc-CC
Q 002309 230 HVSPSLGFQVFSVAKYL-GM 248 (938)
Q Consensus 230 ~~~~~~~~~~l~~a~~~-g~ 248 (938)
.+.-.+...+++.+++. |.
T Consensus 115 vSgD~DF~plv~~lr~~~G~ 134 (165)
T 2qip_A 115 VSGDGDFSLLVERIQQRYNK 134 (165)
T ss_dssp ECCCGGGHHHHHHHHHHHCC
T ss_pred EECChhHHHHHHHHHHHcCc
Confidence 88888999999999984 74
No 394
>2ef0_A Ornithine carbamoyltransferase; TTHA1199, thermus thermophil structural genomics, NPPSFA; 2.00A {Thermus thermophilus}
Probab=23.30 E-value=5e+02 Score=26.30 Aligned_cols=131 Identities=13% Similarity=0.116 Sum_probs=76.4
Q ss_pred EEEEEEeeCCCcchhHHHHHHHHHHHHHhcCCCCCCCCEEEEEEccCCCChHHHHHHHHHHHhc--CcEEEEcCCChhHH
Q 002309 32 VNVGALFTLDSTIGRVAKIAIEEAVKDVNSNSSILHGTKLNITMQSSNCSGFIGMVEALRFMET--DIVAIIGPQCSTVA 109 (938)
Q Consensus 32 i~IG~i~~~~~~~g~~~~~a~~~Av~~iN~~~~il~g~~l~~~~~D~~~~~~~a~~~a~~li~~--~V~aviGp~~s~~~ 109 (938)
-.|+.+|-..+ -..+.+|+.|+.++ .|..+.+...++.-.-...+.-..+.++. .+.++=.+ ....
T Consensus 46 k~~~~lF~e~S---TRTR~SFe~A~~~L-------Gg~~i~l~~~~ss~~kgEsl~DTarvls~~~D~iviR~~-~~~~- 113 (301)
T 2ef0_A 46 KVLALLFEKPS---LRTRTTLEVAMVHL-------GGHAVYLDQKQVGIGEREPVRDVAKNLERFVEGIAARVF-RHET- 113 (301)
T ss_dssp CEEEEEESSCC---HHHHHHHHHHHHHT-------TCEEEEEEGGGSCTTTCCCHHHHHHHHTTTCSEEEEECS-SHHH-
T ss_pred CEEEEEeccCC---cchHHHHHHHHHHc-------CCeEEEECCcccccCCCCchHHHHHHHHHhCCEEEEecC-ChHH-
Confidence 56788887666 36789999999987 24555555444432222223333344444 33333343 2333
Q ss_pred HHHHHhhccCCccEEEcccCCCCCCCCCCCceEEecCCchHHHHHHHHHH---Hhc---CCcEEEEEEEcCccccchHHH
Q 002309 110 HIVSYVSNELQVPLLSFGVTDPTLSSLQYPFFVRTTQSDSYQMTAVAEMV---SYY---GWNAVSVIFVDNEYGRNGVSA 183 (938)
Q Consensus 110 ~~va~~~~~~~iP~Is~~~~~~~l~~~~~p~~~r~~ps~~~~~~ai~~~l---~~~---~w~~vaii~~d~~~g~~~~~~ 183 (938)
+..+++..++|+|... + +...| .+++++++ +++ .-.+|+++.+ . ......
T Consensus 114 --~~~la~~~~vPVINa~--~----~~~HP------------tQaLaDl~Ti~e~~g~l~gl~ia~vGD--~--~rva~S 169 (301)
T 2ef0_A 114 --VEALARHAKVPVVNAL--S----DRAHP------------LQALADLLTLKEVFGGLAGLEVAWVGD--G--NNVLNS 169 (301)
T ss_dssp --HHHHHHHCSSCEEEEE--C----SSCCH------------HHHHHHHHHHHHHHSCCTTCEEEEESC--C--CHHHHH
T ss_pred --HHHHHHHCCCCEEeCC--C----CccCc------------hHHHHHHHHHHHHhCCcCCcEEEEECC--C--chhHHH
Confidence 3445566689999732 2 11222 57777774 344 3467777653 2 456788
Q ss_pred HHHHHhhcceEEEEE
Q 002309 184 LNDKLAERRCRISYK 198 (938)
Q Consensus 184 l~~~l~~~g~~v~~~ 198 (938)
+..++...|.+|...
T Consensus 170 l~~~~~~~g~~v~~~ 184 (301)
T 2ef0_A 170 LLEVAPLAGLKVRVA 184 (301)
T ss_dssp HHHHHHHHTCEEEEE
T ss_pred HHHHHHHcCCEEEEE
Confidence 888888889887654
No 395
>3gyb_A Transcriptional regulators (LACI-family transcriptional regulatory protein); protein structure initiative II(PSI II), nysgxrc; 1.60A {Corynebacterium glutamicum}
Probab=23.23 E-value=1.8e+02 Score=28.67 Aligned_cols=116 Identities=12% Similarity=0.086 Sum_probs=66.0
Q ss_pred EEEEEeeCCCcchhHHHHHHHHHHHHHhcCCCCCCCCEEEEEEccCCCChHHHHHHHHHHHhc--CcEEEEcCCChhHHH
Q 002309 33 NVGALFTLDSTIGRVAKIAIEEAVKDVNSNSSILHGTKLNITMQSSNCSGFIGMVEALRFMET--DIVAIIGPQCSTVAH 110 (938)
Q Consensus 33 ~IG~i~~~~~~~g~~~~~a~~~Av~~iN~~~~il~g~~l~~~~~D~~~~~~~a~~~a~~li~~--~V~aviGp~~s~~~~ 110 (938)
+|+++...... ...-..|+..|+++.+ + ++...+.....+...+.+.+.+++.. .+.||+..... .+.
T Consensus 120 ~i~~i~~~~~~-~~~R~~gf~~~l~~~~----~----~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~~~~d~-~a~ 189 (280)
T 3gyb_A 120 HIAHLRVGSGA-GLRRFESFEATMRAHG----L----EPLSNDYLGPAVEHAGYTETLALLKEHPEVTAIFSSNDI-TAI 189 (280)
T ss_dssp SEEEECCSSHH-HHHHHHHHHHHHHHTT----C----CCEECCCCSCCCHHHHHHHHHHHHHHCTTCCEEEESSHH-HHH
T ss_pred eEEEEeCCCch-HHHHHHHHHHHHHHcC----c----CCCcccccCCCCHHHHHHHHHHHHhCCCCCCEEEECChH-HHH
Confidence 57777765544 5556778887877642 1 11112244556777888888888876 58899985543 333
Q ss_pred HHHHhhccC------CccEEEcccCCCCCCCCCCCceEEecCCchHHHHHHHHHHH
Q 002309 111 IVSYVSNEL------QVPLLSFGVTDPTLSSLQYPFFVRTTQSDSYQMTAVAEMVS 160 (938)
Q Consensus 111 ~va~~~~~~------~iP~Is~~~~~~~l~~~~~p~~~r~~ps~~~~~~ai~~~l~ 160 (938)
.+...+... ++.++++.... +.....|-+-.+..+...++...++++.
T Consensus 190 g~~~al~~~g~~vP~di~vvg~d~~~--~~~~~~p~lttv~~~~~~~g~~av~~l~ 243 (280)
T 3gyb_A 190 GALGAARELGLRVPEDLSIIGYDNTP--LAQTRLINLTTIDDNSIGVGYNAALLLL 243 (280)
T ss_dssp HHHHHHHHHTCCTTTTCEEEEESCCH--HHHSTTTCCCEEECCHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCCCCeeEEEEECCch--HhhccCCCceEEecCHHHHHHHHHHHHH
Confidence 333333333 45577664332 2222234444555666666666666543
No 396
>3lua_A Response regulator receiver protein; two-component signal transduction system, histidine kinase, phosphorelay, receiver domain, nysgxrc; 2.40A {Clostridium thermocellum}
Probab=23.06 E-value=1.7e+02 Score=24.95 Aligned_cols=55 Identities=7% Similarity=0.053 Sum_probs=38.8
Q ss_pred hHHHHHHHHhh-cceEEEEEeecCCCCCCChhhHHHHHHHHhc-CCceEEEEEeC---hhhHHHHHHHHHH
Q 002309 180 GVSALNDKLAE-RRCRISYKSGIPPESGVNTGYVMDLLVKVAL-MESRVIVLHVS---PSLGFQVFSVAKY 245 (938)
Q Consensus 180 ~~~~l~~~l~~-~g~~v~~~~~~~~~~~~~~~d~~~~l~~lk~-~~~~viv~~~~---~~~~~~~l~~a~~ 245 (938)
....+...+++ .|..+.. ..+....+..+++ ..+++|++... ..+...++++.++
T Consensus 16 ~~~~l~~~L~~~~~~~v~~-----------~~~~~~a~~~l~~~~~~dlvi~D~~l~~~~~g~~~~~~l~~ 75 (140)
T 3lua_A 16 EREKTKIIFDNIGEYDFIE-----------VENLKKFYSIFKDLDSITLIIMDIAFPVEKEGLEVLSAIRN 75 (140)
T ss_dssp HHHHHHHHHHHHCCCEEEE-----------ECSHHHHHTTTTTCCCCSEEEECSCSSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccCccEEE-----------ECCHHHHHHHHhcCCCCcEEEEeCCCCCCCcHHHHHHHHHh
Confidence 45667777877 7877652 1234566777777 88999999755 3467778888887
No 397
>2qxy_A Response regulator; regulation of transcription, NYSGXRC, protein structure initiative II (PSI II), structural genomics; 1.95A {Thermotoga maritima}
Probab=22.97 E-value=3.3e+02 Score=23.03 Aligned_cols=57 Identities=5% Similarity=0.035 Sum_probs=38.2
Q ss_pred hHHHHHHHHhhcceEEEEEeecCCCCCCChhhHHHHHHHHhcCCceEEEEEe-ChhhHHHHHHHHHHcC
Q 002309 180 GVSALNDKLAERRCRISYKSGIPPESGVNTGYVMDLLVKVALMESRVIVLHV-SPSLGFQVFSVAKYLG 247 (938)
Q Consensus 180 ~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~lk~~~~~viv~~~-~~~~~~~~l~~a~~~g 247 (938)
....+.+.+++.|..+.. ..+....+..+.+..+++|++.. .......++++.++..
T Consensus 16 ~~~~l~~~L~~~g~~v~~-----------~~~~~~a~~~l~~~~~dlvi~d~~~~~~g~~~~~~l~~~~ 73 (142)
T 2qxy_A 16 TFLAVKNALEKDGFNVIW-----------AKNEQEAFTFLRREKIDLVFVDVFEGEESLNLIRRIREEF 73 (142)
T ss_dssp HHHHHHHHHGGGTCEEEE-----------ESSHHHHHHHHTTSCCSEEEEECTTTHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhCCCEEEE-----------ECCHHHHHHHHhccCCCEEEEeCCCCCcHHHHHHHHHHHC
Confidence 566778888888887652 11234566677778899999986 2234566777777654
No 398
>3eod_A Protein HNR; response regulator, phosphoprotein, two-component regulatory system, signaling protein; 1.75A {Escherichia coli K12}
Probab=22.96 E-value=2.1e+02 Score=23.85 Aligned_cols=70 Identities=10% Similarity=0.080 Sum_probs=42.4
Q ss_pred CCcEEEEEEEcCccccchHHHHHHHHhhcceEEEEEeecCCCCCCChhhHHHHHHHHhcCCceEEEEEeCh--hhHHHHH
Q 002309 163 GWNAVSVIFVDNEYGRNGVSALNDKLAERRCRISYKSGIPPESGVNTGYVMDLLVKVALMESRVIVLHVSP--SLGFQVF 240 (938)
Q Consensus 163 ~w~~vaii~~d~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~lk~~~~~viv~~~~~--~~~~~~l 240 (938)
.-.+|.++- |+. .....+.+.+++.|..+.. . .+....+..+++..+++|++.... .+...++
T Consensus 6 ~~~~ilivd-d~~---~~~~~l~~~L~~~g~~v~~---~--------~~~~~a~~~l~~~~~dlvi~d~~l~~~~g~~~~ 70 (130)
T 3eod_A 6 VGKQILIVE-DEQ---VFRSLLDSWFSSLGATTVL---A--------ADGVDALELLGGFTPDLMICDIAMPRMNGLKLL 70 (130)
T ss_dssp TTCEEEEEC-SCH---HHHHHHHHHHHHTTCEEEE---E--------SCHHHHHHHHTTCCCSEEEECCC-----CHHHH
T ss_pred CCCeEEEEe-CCH---HHHHHHHHHHHhCCceEEE---e--------CCHHHHHHHHhcCCCCEEEEecCCCCCCHHHHH
Confidence 344665553 332 2456677788888876542 1 123456667777889999987543 3456777
Q ss_pred HHHHHcC
Q 002309 241 SVAKYLG 247 (938)
Q Consensus 241 ~~a~~~g 247 (938)
++.++.+
T Consensus 71 ~~l~~~~ 77 (130)
T 3eod_A 71 EHIRNRG 77 (130)
T ss_dssp HHHHHTT
T ss_pred HHHHhcC
Confidence 7777754
No 399
>3he8_A Ribose-5-phosphate isomerase; CTRPI B, isomerization; 1.90A {Clostridium thermocellum} PDB: 3hee_A*
Probab=22.85 E-value=2.9e+02 Score=24.68 Aligned_cols=60 Identities=20% Similarity=0.011 Sum_probs=35.8
Q ss_pred cCccccchHHHHHHHHhhcceEEEEEeecCCCCCCChhhHHHHH-HHHhcCCce-EEEEEeCh
Q 002309 173 DNEYGRNGVSALNDKLAERRCRISYKSGIPPESGVNTGYVMDLL-VKVALMESR-VIVLHVSP 233 (938)
Q Consensus 173 d~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~d~~~~l-~~lk~~~~~-viv~~~~~ 233 (938)
.|..|.+..+.+.+.|++.|.+|.......... .+-.++...+ +.+.+...+ .|++++++
T Consensus 7 sDhaG~~lK~~i~~~L~~~G~eV~D~G~~~~~~-~dYpd~a~~va~~V~~g~~d~GIliCGTG 68 (149)
T 3he8_A 7 SDHGGYNLKREIADFLKKRGYEVIDFGTHGNES-VDYPDFGLKVAEAVKSGECDRGIVICGTG 68 (149)
T ss_dssp ECGGGHHHHHHHHHHHHHTTCEEEECCCCSSSC-CCHHHHHHHHHHHHHTTSSSEEEEEESSS
T ss_pred ECchhHHHHHHHHHHHHHCCCEEEEcCCCCCCC-CCHHHHHHHHHHHHHcCCCCEEEEEcCCc
Confidence 456688899999999999999988665554331 1122332222 233334444 55555554
No 400
>2jfz_A Glutamate racemase; cell WALL, isomerase, cell shape, peptidoglycan synthesis, peptidoglycan biosynthesis; HET: 003 DGL; 1.86A {Helicobacter pylori} PDB: 2jfx_A* 2jfy_A* 2w4i_A*
Probab=22.74 E-value=1.2e+02 Score=30.18 Aligned_cols=37 Identities=14% Similarity=0.134 Sum_probs=26.1
Q ss_pred HHHHHhcCcEEEEcCCChhHHHHHHHhhccCCccEEE
Q 002309 89 ALRFMETDIVAIIGPQCSTVAHIVSYVSNELQVPLLS 125 (938)
Q Consensus 89 a~~li~~~V~aviGp~~s~~~~~va~~~~~~~iP~Is 125 (938)
+..|.+.++.+|+-+-++..+..+..+-+..++|+|.
T Consensus 55 ~~~L~~~g~d~iviaCNTa~~~~~~~lr~~~~iPvig 91 (255)
T 2jfz_A 55 LDFFKPHEIELLIVACNTASALALEEMQKYSKIPIVG 91 (255)
T ss_dssp HHHHGGGCCSCEEECCHHHHHHTHHHHHHHCSSCEEC
T ss_pred HHHHHHCCCCEEEEeCchhhHHHHHHHHHhCCCCEEe
Confidence 3344455899888877666644566676778999996
No 401
>1uuy_A CNX1, molybdopterin biosynthesis CNX1; chelatase, molybdenum cofactor biosynthesis; HET: MTE AMP; 1.45A {Arabidopsis thaliana} SCOP: c.57.1.1 PDB: 1o8q_A 1o8n_A 1o8o_A 1uux_A* 1eav_A
Probab=22.74 E-value=1.2e+02 Score=27.74 Aligned_cols=75 Identities=13% Similarity=0.126 Sum_probs=47.1
Q ss_pred cEEEEEEEcCcc--cc---chHHHHHHHHhhc-----ceEEEEEeecCCCCCCChhhHHHHHHHHhc-CCceEEEEEeCh
Q 002309 165 NAVSVIFVDNEY--GR---NGVSALNDKLAER-----RCRISYKSGIPPESGVNTGYVMDLLVKVAL-MESRVIVLHVSP 233 (938)
Q Consensus 165 ~~vaii~~d~~~--g~---~~~~~l~~~l~~~-----g~~v~~~~~~~~~~~~~~~d~~~~l~~lk~-~~~~viv~~~~~ 233 (938)
-+|+||...|+- |+ .....+.+.+++. |.++.....++-+ .+.+...+++..+ .++|+||+.+..
T Consensus 6 ~rv~IistGde~~~G~~~d~n~~~l~~~l~~~~~~~~G~~v~~~~iv~Dd----~~~i~~~l~~~~~~~~~DlVittGG~ 81 (167)
T 1uuy_A 6 YKVAILTVSDTVSAGAGPDRSGPRAVSVVDSSSEKLGGAKVVATAVVPDE----VERIKDILQKWSDVDEMDLILTLGGT 81 (167)
T ss_dssp EEEEEEEECHHHHTTSSCCSHHHHHHHHHHHTTTTTTSEEEEEEEEECSC----HHHHHHHHHHHHHTSCCSEEEEESCC
T ss_pred cEEEEEEECCcccCCCCccCcHHHHHHHHHhccccCCCcEEeEEEEcCCC----HHHHHHHHHHHHhcCCCCEEEECCCC
Confidence 477877754432 11 1124566677766 8888776666643 7778888888764 579999987553
Q ss_pred -----hhHHHHHHHH
Q 002309 234 -----SLGFQVFSVA 243 (938)
Q Consensus 234 -----~~~~~~l~~a 243 (938)
+.....++++
T Consensus 82 g~g~~D~t~~a~~~~ 96 (167)
T 1uuy_A 82 GFTPRDVTPEATKKV 96 (167)
T ss_dssp SSSTTCCHHHHHHHH
T ss_pred CCCCCCchHHHHHHH
Confidence 3344455444
No 402
>3rf7_A Iron-containing alcohol dehydrogenase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: NAD EPE; 2.12A {Shewanella denitrificans}
Probab=22.67 E-value=1.4e+02 Score=31.49 Aligned_cols=96 Identities=11% Similarity=-0.003 Sum_probs=59.7
Q ss_pred CceEEecCCchHHHHHHHHHHHhcCC---cEEEEEEEcCccccchHHHHHHHHhhcceEEEEEeecCCCCCCChhhHHHH
Q 002309 139 PFFVRTTQSDSYQMTAVAEMVSYYGW---NAVSVIFVDNEYGRNGVSALNDKLAERRCRISYKSGIPPESGVNTGYVMDL 215 (938)
Q Consensus 139 p~~~r~~ps~~~~~~ai~~~l~~~~w---~~vaii~~d~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~d~~~~ 215 (938)
|.-+...+... ..+.++++.++. +++.+|++...... .+.+.+++.|+.+..-..+.++ .+.+.+...
T Consensus 28 p~~i~~G~g~l---~~l~~~l~~~g~~~~~~~liVtd~~~~~~----~l~~~L~~~g~~~~~f~~v~~~--pt~~~v~~~ 98 (375)
T 3rf7_A 28 VPKMIFGRGSF---VQLDTVLEQERTDANDFVVFLVDDVHQHK----PLAARVPNKAHDLVIYVNVDDE--PTTVQVDEL 98 (375)
T ss_dssp CSCEEESTTGG---GGHHHHHHTTCCSTTCCEEEEEEGGGTTS----HHHHHSCCCTTSEEEEECCSSC--CBHHHHHHH
T ss_pred CCeEEEcCCHH---HHHHHHHHHhcccCCCeEEEEECchhhhh----HHHHHHHhcCCeEEEEeCCCCC--CCHHHHHHH
Confidence 44444555433 335667777763 78888885543322 3667777777765433344444 456778888
Q ss_pred HHHHhcCC---ceEEEEEeChh--hHHHHHHHH
Q 002309 216 LVKVALME---SRVIVLHVSPS--LGFQVFSVA 243 (938)
Q Consensus 216 l~~lk~~~---~~viv~~~~~~--~~~~~l~~a 243 (938)
+..+++.+ +|+||-.+.+. +...++...
T Consensus 99 ~~~~~~~~~~~~D~IIavGGGS~iD~AK~iA~~ 131 (375)
T 3rf7_A 99 TAQVKAFNTKLPVSVVGLGGGSTMDLAKAVSLM 131 (375)
T ss_dssp HHHHHHHCSSCCSEEEEEESHHHHHHHHHHHHH
T ss_pred HHHHHHhCCCCCCEEEEeCCcHHHHHHHHHHHH
Confidence 88888777 99999877654 556655544
No 403
>3e3m_A Transcriptional regulator, LACI family; structural genomics, DNA-binding, plasmid, transcription regulation, PSI-2; 1.60A {Silicibacter pomeroyi}
Probab=22.43 E-value=2.3e+02 Score=29.28 Aligned_cols=80 Identities=11% Similarity=0.039 Sum_probs=54.1
Q ss_pred CCcEEEEEEEc--CccccchHHHHHHHHhhcceEEEEEeecCCCCCCChhhHHHHHHHHhcCCceEEEEEeChhhHHHHH
Q 002309 163 GWNAVSVIFVD--NEYGRNGVSALNDKLAERRCRISYKSGIPPESGVNTGYVMDLLVKVALMESRVIVLHVSPSLGFQVF 240 (938)
Q Consensus 163 ~w~~vaii~~d--~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~lk~~~~~viv~~~~~~~~~~~l 240 (938)
.-+.|+++..+ +.|.......+.+++++.|..+..... . .+...-...++.+...+.|.||+...... ...+
T Consensus 69 ~~~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~-~----~~~~~~~~~~~~l~~~~vdGiI~~~~~~~-~~~~ 142 (355)
T 3e3m_A 69 RSGFVGLLLPSLNNLHFAQTAQSLTDVLEQGGLQLLLGYT-A----YSPEREEQLVETMLRRRPEAMVLSYDGHT-EQTI 142 (355)
T ss_dssp --CEEEEEESCSBCHHHHHHHHHHHHHHHHTTCEEEEEEC-T----TCHHHHHHHHHHHHHTCCSEEEEECSCCC-HHHH
T ss_pred CCCEEEEEeCCCCchHHHHHHHHHHHHHHHCCCEEEEEeC-C----CChHHHHHHHHHHHhCCCCEEEEeCCCCC-HHHH
Confidence 34578888853 456677888999999999998764321 1 12444556777787889999998765433 3556
Q ss_pred HHHHHcCC
Q 002309 241 SVAKYLGM 248 (938)
Q Consensus 241 ~~a~~~g~ 248 (938)
+.+.+.|+
T Consensus 143 ~~l~~~~i 150 (355)
T 3e3m_A 143 RLLQRASI 150 (355)
T ss_dssp HHHHHCCS
T ss_pred HHHHhCCC
Confidence 66777665
No 404
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=22.40 E-value=37 Score=32.63 Aligned_cols=30 Identities=17% Similarity=0.225 Sum_probs=26.3
Q ss_pred cEEEEcCCChhHHHHHHHhhccCCccEEEc
Q 002309 97 IVAIIGPQCSTVAHIVSYVSNELQVPLLSF 126 (938)
Q Consensus 97 V~aviGp~~s~~~~~va~~~~~~~iP~Is~ 126 (938)
+.+++||.+|+=......+++.+++|+||.
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~~g~~~ist 31 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKEKGFVHIST 31 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCCeEEcH
Confidence 467899999998888888999999999984
No 405
>3clk_A Transcription regulator; 11017J, PSI-II, NYSGXRC, dimer, structural genomics, protein structure initiative; 2.08A {Lactobacillus plantarum WCFS1}
Probab=22.02 E-value=92 Score=31.24 Aligned_cols=79 Identities=5% Similarity=0.035 Sum_probs=46.1
Q ss_pred cEEEEEEE--cCccccchHHHHHHHHhhcceEEEEEeecCCCCCCChhhHHHHHHHHhcCCceEEEEEeChhhHHHHHHH
Q 002309 165 NAVSVIFV--DNEYGRNGVSALNDKLAERRCRISYKSGIPPESGVNTGYVMDLLVKVALMESRVIVLHVSPSLGFQVFSV 242 (938)
Q Consensus 165 ~~vaii~~--d~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~lk~~~~~viv~~~~~~~~~~~l~~ 242 (938)
++|+++.. ++.|.......+.+++++.|+.+... +... .+.......++.+...+.|.||+...... ...++.
T Consensus 9 ~~Ig~i~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~--~~~~--~~~~~~~~~~~~l~~~~vdgiI~~~~~~~-~~~~~~ 83 (290)
T 3clk_A 9 NVIAAVVSSVRTNFAQQILDGIQEEAHKNGYNLIIV--YSGS--ADPEEQKHALLTAIERPVMGILLLSIALT-DDNLQL 83 (290)
T ss_dssp CEEEEECCCCSSSHHHHHHHHHHHHHHTTTCEEEEE--C------------CHHHHHHSSCCSEEEEESCC-----CHHH
T ss_pred CEEEEEeCCCCChHHHHHHHHHHHHHHHcCCeEEEE--eCCC--CCHHHHHHHHHHHHhcCCCEEEEecccCC-HHHHHH
Confidence 57888875 45677788889999999999887643 0111 11222344567777788999988754432 245566
Q ss_pred HHHcCC
Q 002309 243 AKYLGM 248 (938)
Q Consensus 243 a~~~g~ 248 (938)
+.+.|.
T Consensus 84 l~~~~i 89 (290)
T 3clk_A 84 LQSSDV 89 (290)
T ss_dssp HHCC--
T ss_pred HHhCCC
Confidence 655553
No 406
>3ph3_A Ribose-5-phosphate isomerase; alpha-beta-alpha sandwich fold; HET: RB5; 2.07A {Clostridium thermocellum} SCOP: c.121.1.1 PDB: 3ph4_A*
Probab=21.94 E-value=3e+02 Score=25.14 Aligned_cols=60 Identities=20% Similarity=0.011 Sum_probs=35.3
Q ss_pred cCccccchHHHHHHHHhhcceEEEEEeecCCCCCCChhhHHHHH-HHHhcCCce-EEEEEeCh
Q 002309 173 DNEYGRNGVSALNDKLAERRCRISYKSGIPPESGVNTGYVMDLL-VKVALMESR-VIVLHVSP 233 (938)
Q Consensus 173 d~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~d~~~~l-~~lk~~~~~-viv~~~~~ 233 (938)
.|..|.+..+.+.+.|++.|.+|.......... .+-.|+...+ +.+.+...+ .|++++++
T Consensus 27 sDhaG~~lK~~i~~~L~~~G~eV~D~G~~~~~~-~dYpd~a~~va~~V~~g~~d~GIliCGTG 88 (169)
T 3ph3_A 27 SDHGGYNLKREIADFLKKRGYEVIDFGTHGNES-VDYPDFGLKVAEAVKSGECDRGIVICGTG 88 (169)
T ss_dssp ECGGGHHHHHHHHHHHHHTTCEEEECCCCSSSC-CCHHHHHHHHHHHHHTTSSSEEEEEESSS
T ss_pred eCchHHHHHHHHHHHHHHCCCEEEEcCCCCCCC-CCHHHHHHHHHHHHHcCCCCEEEEEcCCc
Confidence 455688889999999999999988655544331 1122332222 333344444 45555554
No 407
>2b4l_A Glycine betaine-binding protein; substrate-binding protein, closed liganded, ABC-transporter, compatible solutes, transport protein; 2.00A {Bacillus subtilis} PDB: 2b4m_A* 3chg_D
Probab=21.87 E-value=1.1e+02 Score=30.69 Aligned_cols=58 Identities=17% Similarity=0.211 Sum_probs=35.9
Q ss_pred CCceeEEEecccccccceeeeccCCcceEeeeHHHHHHHHHhCCCCccEEEEecCCCCCCCChhHHHHhhhcceecEEec
Q 002309 463 NGKLLKIGVPNRASYREFVSKVRGSDMFQGFCIDVFTAAVNLLPYAVPYQFVAFGDGHKNPSYTQLVDSITTGVFDAVVG 542 (938)
Q Consensus 463 ~g~~lrv~~~~~~~~~~~~~~~~~~~~~~G~~~dll~~la~~l~f~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~D~~~~ 542 (938)
.+++|+||... |..- -+...++..+.+.+|+++++.. . ++ .-+...|.+|++|+.+.
T Consensus 163 ~~~~I~ig~~~---w~e~-----------~~~~~v~~~~Le~~Gy~Ve~~~--~------~~-~~~~~al~~G~iD~~~e 219 (268)
T 2b4l_A 163 KGDKINLAYVA---WDSE-----------IASTNVIGKVLEDLGYEVTLTQ--V------EA-GPMWTAIATGSADASLS 219 (268)
T ss_dssp SSCEEEEEECC---CHHH-----------HHHHHHHHHHHHHHTCEEEEEE--C------CT-THHHHHHHHTSSSEEEE
T ss_pred cCcceEEEccC---ccHH-----------HHHHHHHHHHHHHcCCceEEEE--C------Ch-HHHHHHHHCCCCeEEeh
Confidence 45678887763 3210 1123345556667898865544 2 22 56778899999999865
Q ss_pred c
Q 002309 543 D 543 (938)
Q Consensus 543 ~ 543 (938)
.
T Consensus 220 ~ 220 (268)
T 2b4l_A 220 A 220 (268)
T ss_dssp E
T ss_pred h
Confidence 4
No 408
>2bon_A Lipid kinase; DAG kinase, transferase; 1.90A {Escherichia coli} SCOP: e.52.1.2 PDB: 2jgr_A 2p1r_A
Probab=21.87 E-value=2.1e+02 Score=29.49 Aligned_cols=75 Identities=9% Similarity=-0.057 Sum_probs=48.3
Q ss_pred cEEEEEEEcCc-cccchHHHHHHHHhhcceEEEEEeecCCCCCCChhhHHHHHHHHhcCCceEEEEEeChhhHHHHHHHH
Q 002309 165 NAVSVIFVDNE-YGRNGVSALNDKLAERRCRISYKSGIPPESGVNTGYVMDLLVKVALMESRVIVLHVSPSLGFQVFSVA 243 (938)
Q Consensus 165 ~~vaii~~d~~-~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~lk~~~~~viv~~~~~~~~~~~l~~a 243 (938)
+++.+|+.-.. -+ .....+.+.+++.|+.+.....-. ..+......++...++|.||+.+.-.....++..+
T Consensus 30 ~~~~vi~Np~sg~~-~~~~~i~~~l~~~g~~~~~~~t~~------~~~~~~~~~~~~~~~~d~vvv~GGDGTl~~v~~~l 102 (332)
T 2bon_A 30 PASLLILNGKSTDN-LPLREAIMLLREEGMTIHVRVTWE------KGDAARYVEEARKFGVATVIAGGGDGTINEVSTAL 102 (332)
T ss_dssp CCEEEEECSSSTTC-HHHHHHHHHHHTTTCCEEEEECCS------TTHHHHHHHHHHHHTCSEEEEEESHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCC-chHHHHHHHHHHcCCcEEEEEecC------cchHHHHHHHHHhcCCCEEEEEccchHHHHHHHHH
Confidence 67888873222 22 456778888888998765443222 22344445555455789988888888888888887
Q ss_pred HHc
Q 002309 244 KYL 246 (938)
Q Consensus 244 ~~~ 246 (938)
.+.
T Consensus 103 ~~~ 105 (332)
T 2bon_A 103 IQC 105 (332)
T ss_dssp HHC
T ss_pred hhc
Confidence 743
No 409
>3cvg_A Putative metal binding protein; PSI-II, NYSGXRC, periplasmic, structural GENO protein structure initiative; 1.97A {Coccidioides immitis}
Probab=21.85 E-value=53 Score=33.48 Aligned_cols=73 Identities=10% Similarity=0.137 Sum_probs=47.9
Q ss_pred eeeHHHHHHHHHh---C---CCCccEEEEecCCCCCCCChhHHHHhhhcceecEEeccEeeecCce--eeeee-cc-cee
Q 002309 492 GFCIDVFTAAVNL---L---PYAVPYQFVAFGDGHKNPSYTQLVDSITTGVFDAVVGDITIVTNRT--KIVDF-SQ-PYA 561 (938)
Q Consensus 492 G~~~dll~~la~~---l---~f~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~D~~~~~~~~t~~r~--~~v~f-s~-p~~ 561 (938)
.+..+++..+.++ . + +++++.. ++...++.+|.+|++|+++..-....+.. ..+.+ .. |+.
T Consensus 33 ~~lp~ll~~F~~~~~~~~~P~--v~v~l~~-------~~s~~l~~~l~~G~~Dl~i~~~~~~~~~l~~~~~~~~~~~~l~ 103 (294)
T 3cvg_A 33 GLVKELADAFIKSKVDSGSAP--FKVAWYK-------SDTTVTINYLKDGIVDVGITYSPVAERISIKHGISESPSYYAF 103 (294)
T ss_dssp THHHHHHHHHHHHHHSCC-----CEEEEEE-------CCHHHHHHHHHTTSCSEEEESCHHHHHHHHHTTSBCSSCEEEE
T ss_pred HHHHHHHHHHHhhhcccCCCC--eEEEEEe-------CCHHHHHHHHHcCCCcEEEEcCchhhhHHHhCCcccceeeeEE
Confidence 4566788888888 7 5 4466655 56889999999999999875321111110 11112 24 888
Q ss_pred cccEEEEEeccC
Q 002309 562 ASGLVVVVPFRK 573 (938)
Q Consensus 562 ~~~~~~lv~~~~ 573 (938)
...++++++...
T Consensus 104 ~d~lvlv~~~~h 115 (294)
T 3cvg_A 104 RDHFMLIGPPSN 115 (294)
T ss_dssp EEEEEEEECTTC
T ss_pred eccEEEEecCCC
Confidence 889999988765
No 410
>1jlj_A Gephyrin; globular alpha/beta fold, structural protein; 1.60A {Homo sapiens} SCOP: c.57.1.1 PDB: 1ihc_A
Probab=21.77 E-value=2.5e+02 Score=26.29 Aligned_cols=69 Identities=17% Similarity=0.089 Sum_probs=45.8
Q ss_pred hcCCcEEEEEEEcCcc--c---cchHHHHHHHHhh---cceEEEEEeecCCCCCCChhhHHHHHHHHhc-CCceEEEEEe
Q 002309 161 YYGWNAVSVIFVDNEY--G---RNGVSALNDKLAE---RRCRISYKSGIPPESGVNTGYVMDLLVKVAL-MESRVIVLHV 231 (938)
Q Consensus 161 ~~~w~~vaii~~d~~~--g---~~~~~~l~~~l~~---~g~~v~~~~~~~~~~~~~~~d~~~~l~~lk~-~~~~viv~~~ 231 (938)
-+.--+++||...|+- | ......+.+.+++ .|.++.....++-+ .+.+...+++..+ .++|+||+.+
T Consensus 11 v~~~~rv~IistGdEl~~g~~~D~n~~~L~~~L~~~~~~G~~v~~~~iv~Dd----~~~I~~al~~a~~~~~~DlVIttG 86 (189)
T 1jlj_A 11 HDHQIRVGVLTVSDSCFRNLAEDRSGINLKDLVQDPSLLGGTISAYKIVPDE----IEEIKETLIDWCDEKELNLILTTG 86 (189)
T ss_dssp --CCCEEEEEEECHHHHTTSSCCHHHHHHHHHHHCTTTTCCEEEEEEEECSC----HHHHHHHHHHHHHTSCCSEEEEES
T ss_pred ccCCCEEEEEEECCccCCCcccchHHHHHHHHHhchhcCCcEEEEEEEeCCC----HHHHHHHHHHHhhcCCCCEEEEcC
Confidence 3444578888765441 1 2334677888887 78888876666643 7778888887754 3789999875
Q ss_pred Ch
Q 002309 232 SP 233 (938)
Q Consensus 232 ~~ 233 (938)
..
T Consensus 87 Gt 88 (189)
T 1jlj_A 87 GT 88 (189)
T ss_dssp CC
T ss_pred CC
Confidence 53
No 411
>1gud_A ALBP, D-allose-binding periplasmic protein; periplasmic binding protein, X-RAY crystallography, hinge bending, conformational change; 1.7A {Escherichia coli} SCOP: c.93.1.1 PDB: 1gub_A 1rpj_A*
Probab=21.73 E-value=1.7e+02 Score=29.27 Aligned_cols=81 Identities=11% Similarity=0.037 Sum_probs=51.4
Q ss_pred cEEEEEEE--cCccccchHHHHHHHHhhcceEEEEEeecCCCCCCChhhHHHHHHHHhcCCceEEEEEeChh-hHHHHHH
Q 002309 165 NAVSVIFV--DNEYGRNGVSALNDKLAERRCRISYKSGIPPESGVNTGYVMDLLVKVALMESRVIVLHVSPS-LGFQVFS 241 (938)
Q Consensus 165 ~~vaii~~--d~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~lk~~~~~viv~~~~~~-~~~~~l~ 241 (938)
+.|+++.. ++.|.......+.+++++.|..+....... . .+...-...++.+...+.|.|++..... .....++
T Consensus 2 ~~Igvi~~~~~~~f~~~~~~gi~~~a~~~g~~~~~~~~~~-~--~~~~~~~~~~~~~~~~~vdgiIi~~~~~~~~~~~~~ 78 (288)
T 1gud_A 2 AEYAVVLKTLSNPFWVDMKKGIEDEAKTLGVSVDIFASPS-E--GDFQSQLQLFEDLSNKNYKGIAFAPLSSVNLVMPVA 78 (288)
T ss_dssp CEEEEEESCSSSHHHHHHHHHHHHHHHHHTCCEEEEECSS-T--TCHHHHHHHHHHHHTSSEEEEEECCSSSSTTHHHHH
T ss_pred cEEEEEeCCCCchHHHHHHHHHHHHHHHcCCEEEEeCCCC-C--CCHHHHHHHHHHHHHcCCCEEEEeCCChHHHHHHHH
Confidence 46777774 356677778888999999998766432101 1 1233444567777778899988865433 2234567
Q ss_pred HHHHcCC
Q 002309 242 VAKYLGM 248 (938)
Q Consensus 242 ~a~~~g~ 248 (938)
.+.+.|+
T Consensus 79 ~~~~~~i 85 (288)
T 1gud_A 79 RAWKKGI 85 (288)
T ss_dssp HHHHTTC
T ss_pred HHHHCCC
Confidence 7776664
No 412
>3grf_A Ornithine carbamoyltransferase; ornithine transcarbamoylase, arginine degradation pathway, giardia lamblia, drug target; 2.00A {Giardia intestinalis}
Probab=21.61 E-value=4.5e+02 Score=27.03 Aligned_cols=131 Identities=13% Similarity=0.131 Sum_probs=72.2
Q ss_pred EEEEEEeeCCCcchhHHHHHHHHHHHHHhcCCCCCCCCEEE--EEEccCCCChHHHHHHHHHHHhcCcEEEE--cCCChh
Q 002309 32 VNVGALFTLDSTIGRVAKIAIEEAVKDVNSNSSILHGTKLN--ITMQSSNCSGFIGMVEALRFMETDIVAII--GPQCST 107 (938)
Q Consensus 32 i~IG~i~~~~~~~g~~~~~a~~~Av~~iN~~~~il~g~~l~--~~~~D~~~~~~~a~~~a~~li~~~V~avi--Gp~~s~ 107 (938)
-.|+.+|...+. ..+.+|+.|+.++. |..+. +-. ++.-.-...+.-..+.++.=+.+|+ .+. .
T Consensus 45 k~la~lF~e~ST---RTR~SFE~A~~~LG-------g~~i~~~l~~-~ss~~kgEsl~DTarvls~~~D~iviR~~~-~- 111 (328)
T 3grf_A 45 KTLLAFFAKPSL---RTRVSLETAMTRLG-------GHAIYYELGA-NSNVGGKETVQDTAEVFSRMVDICTARLAT-K- 111 (328)
T ss_dssp CEEEEEESSCCH---HHHHHHHHHHHHHT-------CEEEEEEC-----------CHHHHHHHHTTTCSEEEEECSS-H-
T ss_pred CEEEEEecCCCc---hHHHHHHHHHHHCC-------CeEEccccCc-cccCCCCCCHHHHHHHHHhhCCEEEEecCC-h-
Confidence 468888877663 68899999999983 33333 333 3332222233333444444333333 432 2
Q ss_pred HHHHHHHhhccCCccEEEcccCCCCCCCCCCCceEEecCCchHHHHHHHHHH---HhcC----------CcEEEEEEEcC
Q 002309 108 VAHIVSYVSNELQVPLLSFGVTDPTLSSLQYPFFVRTTQSDSYQMTAVAEMV---SYYG----------WNAVSVIFVDN 174 (938)
Q Consensus 108 ~~~~va~~~~~~~iP~Is~~~~~~~l~~~~~p~~~r~~ps~~~~~~ai~~~l---~~~~----------w~~vaii~~d~ 174 (938)
..+..+++..+||+|.. .+ +...| .+++++++ +++| ..+|+++. |
T Consensus 112 --~~~~~lA~~~~vPVINa--g~----~~~HP------------tQaLaDl~Ti~e~~g~~~~~~~~l~gl~va~vG--D 169 (328)
T 3grf_A 112 --EMMREMAQHASVPCINA--LD----DFGHP------------LQMVCDFMTIKEKFTAAGEFSNGFKGIKFAYCG--D 169 (328)
T ss_dssp --HHHHHHHHHCSSCEEES--SC----SSCCH------------HHHHHHHHHHHHHHHHTTCCTTTGGGCCEEEES--C
T ss_pred --hHHHHHHHhCCCCEEeC--CC----CCCCc------------HHHHHHHHHHHHHhCCccccccccCCcEEEEeC--C
Confidence 33445566678999973 22 11222 56777763 3444 35777775 2
Q ss_pred ccccchHHHHHHHHhhcceEEEEE
Q 002309 175 EYGRNGVSALNDKLAERRCRISYK 198 (938)
Q Consensus 175 ~~g~~~~~~l~~~l~~~g~~v~~~ 198 (938)
.. ......+..++...|.++...
T Consensus 170 ~~-~~va~Sl~~~~~~~G~~v~~~ 192 (328)
T 3grf_A 170 SM-NNVTYDLMRGCALLGMECHVC 192 (328)
T ss_dssp CS-SHHHHHHHHHHHHHTCEEEEE
T ss_pred CC-cchHHHHHHHHHHcCCEEEEE
Confidence 22 247788888888889887643
No 413
>2yv1_A Succinyl-COA ligase [ADP-forming] subunit alpha; COA-binding domain, structural genomics, NPPSFA; 1.70A {Methanocaldococcus jannaschii}
Probab=21.58 E-value=2.5e+02 Score=28.42 Aligned_cols=132 Identities=8% Similarity=-0.004 Sum_probs=77.6
Q ss_pred ChHHHHHHHHHHHhcCcE-EEEcCC--ChhHHHHHHHhhccCCccEEEcccCCCCCCCCCCCceEEecCCchHHHHHHHH
Q 002309 81 SGFIGMVEALRFMETDIV-AIIGPQ--CSTVAHIVSYVSNELQVPLLSFGVTDPTLSSLQYPFFVRTTQSDSYQMTAVAE 157 (938)
Q Consensus 81 ~~~~a~~~a~~li~~~V~-aviGp~--~s~~~~~va~~~~~~~iP~Is~~~~~~~l~~~~~p~~~r~~ps~~~~~~ai~~ 157 (938)
.+..+...+.+.++.++. +|+... .......+...+...++.++.+.+.. +-+.. ....-+.|..
T Consensus 79 p~~~~~~~v~ea~~~Gi~~vVi~t~G~~~~~~~~l~~~A~~~gi~viGPNc~G--ii~~~-~~~~~~~~~~--------- 146 (294)
T 2yv1_A 79 PAPFAKDAVFEAIDAGIELIVVITEHIPVHDTMEFVNYAEDVGVKIIGPNTPG--IASPK-VGKLGIIPME--------- 146 (294)
T ss_dssp CHHHHHHHHHHHHHTTCSEEEECCSCCCHHHHHHHHHHHHHHTCEEECSSCCE--EEETT-TEEEECCCGG---------
T ss_pred CHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHcCCEEEcCCCce--eeccC-cceeeecccC---------
Confidence 456666677777777877 455433 23345678888888899888665331 11110 0111111211
Q ss_pred HHHhcCCcEEEEEEEcCccccchHHHHHHHHhhcceEEEEEeecCCCCCCC-hhhHHHHHHHHhc-CCceEEEEEeCh
Q 002309 158 MVSYYGWNAVSVIFVDNEYGRNGVSALNDKLAERRCRISYKSGIPPESGVN-TGYVMDLLVKVAL-MESRVIVLHVSP 233 (938)
Q Consensus 158 ~l~~~~w~~vaii~~d~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~-~~d~~~~l~~lk~-~~~~viv~~~~~ 233 (938)
.+.--+|++|.+... ....+.+.+.+.|+-+.....+-.. .. ..++.+.|+.+.+ .++++|+++...
T Consensus 147 ---~~~~G~va~vSqSG~----l~~~~~~~~~~~g~G~s~~vs~G~~--~~~~~~~~d~l~~~~~D~~T~~I~l~~E~ 215 (294)
T 2yv1_A 147 ---VLKEGSVGMVSRSGT----LTYEIAHQIKKAGFGVSTCVGIGGD--PIVGLRYKEVLDLFEKDDETEAIVMIGEI 215 (294)
T ss_dssp ---GCCEEEEEEEESCSH----HHHHHHHHHHHTTCCEEEEEECCSS--SSCSSCHHHHHHHHHTCTTCSEEEEEEES
T ss_pred ---CCCCCCEEEEECCHH----HHHHHHHHHHhCCCCeEEEEeeCCC--CCCCCCHHHHHHHHhcCCCCCEEEEEEee
Confidence 223457999987765 3455566777777666555444433 21 3466777777654 689999999875
No 414
>2o20_A Catabolite control protein A; CCPA, transcriptional regulator, helix-turn-helix, transcrip; 1.90A {Lactococcus lactis}
Probab=21.53 E-value=2.1e+02 Score=29.20 Aligned_cols=80 Identities=13% Similarity=0.003 Sum_probs=52.7
Q ss_pred CCcEEEEEEEc--CccccchHHHHHHHHhhcceEEEEEeecCCCCCCChhhHHHHHHHHhcCCceEEEEEeChhhHHHHH
Q 002309 163 GWNAVSVIFVD--NEYGRNGVSALNDKLAERRCRISYKSGIPPESGVNTGYVMDLLVKVALMESRVIVLHVSPSLGFQVF 240 (938)
Q Consensus 163 ~w~~vaii~~d--~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~lk~~~~~viv~~~~~~~~~~~l 240 (938)
.-..|+++..+ +.|.......+.+++++.|..+..... . .+.......++.+...+.|.||+...... ...+
T Consensus 62 ~~~~Ig~i~~~~~~~~~~~~~~gi~~~~~~~g~~~~~~~~---~--~~~~~~~~~~~~l~~~~vdgiI~~~~~~~-~~~~ 135 (332)
T 2o20_A 62 RTTTVGVILPTITSTYFAAITRGVDDIASMYKYNMILANS---D--NDVEKEEKVLETFLSKQVDGIVYMGSSLD-EKIR 135 (332)
T ss_dssp CCCEEEEEESCTTCHHHHHHHHHHHHHHHHTTCEEEEEEC---T--TCHHHHHHHHHHHHHTTCSEEEECSSCCC-HHHH
T ss_pred CCCEEEEEeCCCCCcHHHHHHHHHHHHHHHcCCEEEEEEC---C--CChHHHHHHHHHHHhCCCCEEEEeCCCCC-HHHH
Confidence 34578988853 557777888999999999998764321 1 12444556677777788999988764222 2345
Q ss_pred HHHHHcCC
Q 002309 241 SVAKYLGM 248 (938)
Q Consensus 241 ~~a~~~g~ 248 (938)
+.+.+.|.
T Consensus 136 ~~l~~~~i 143 (332)
T 2o20_A 136 TSLKNSRT 143 (332)
T ss_dssp HHHHHHCC
T ss_pred HHHHhCCC
Confidence 55555554
No 415
>2qr3_A Two-component system response regulator; structural genomics, signal receiver, PSI-2, protein structu initiative; 1.80A {Bacteroides fragilis}
Probab=21.47 E-value=2.6e+02 Score=23.59 Aligned_cols=57 Identities=12% Similarity=0.036 Sum_probs=37.0
Q ss_pred hHHHHHHHHhhcceEEEEEeecCCCCCCChhhHHHHHHHHhcCCceEEEEEeCh-------hhHHHHHHHHHHcC
Q 002309 180 GVSALNDKLAERRCRISYKSGIPPESGVNTGYVMDLLVKVALMESRVIVLHVSP-------SLGFQVFSVAKYLG 247 (938)
Q Consensus 180 ~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~lk~~~~~viv~~~~~-------~~~~~~l~~a~~~g 247 (938)
....+.+.+++.|..+... . +....+..+++..+++|++.... .+...++++.++..
T Consensus 15 ~~~~l~~~L~~~g~~v~~~---~--------~~~~a~~~l~~~~~dlvi~d~~~~~~~~~~~~g~~~~~~l~~~~ 78 (140)
T 2qr3_A 15 VLTAVQLLLKNHFSKVITL---S--------SPVSLSTVLREENPEVVLLDMNFTSGINNGNEGLFWLHEIKRQY 78 (140)
T ss_dssp HHHHHHHHHTTTSSEEEEE---C--------CHHHHHHHHHHSCEEEEEEETTTTC-----CCHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhCCcEEEEe---C--------CHHHHHHHHHcCCCCEEEEeCCcCCCCCCCccHHHHHHHHHhhC
Confidence 5567778888888776521 1 23345555666779999997653 35667777777653
No 416
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=21.40 E-value=31 Score=33.52 Aligned_cols=31 Identities=13% Similarity=0.169 Sum_probs=27.7
Q ss_pred CcEEEEcCCChhHHHHHHHhhccCCccEEEc
Q 002309 96 DIVAIIGPQCSTVAHIVSYVSNELQVPLLSF 126 (938)
Q Consensus 96 ~V~aviGp~~s~~~~~va~~~~~~~iP~Is~ 126 (938)
+|..|+||.+|+=......+++.+++|+||.
T Consensus 30 kiI~llGpPGsGKgTqa~~L~~~~g~~hIst 60 (217)
T 3umf_A 30 KVIFVLGGPGSGKGTQCEKLVQKFHFNHLSS 60 (217)
T ss_dssp EEEEEECCTTCCHHHHHHHHHHHHCCEEECH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHCCceEcH
Confidence 6889999999998888888999999999974
No 417
>1dbq_A Purine repressor; transcription regulation, DNA-binding regulatory protein; 2.20A {Escherichia coli} SCOP: c.93.1.1 PDB: 1jhz_A
Probab=21.25 E-value=2.4e+02 Score=27.86 Aligned_cols=64 Identities=9% Similarity=0.070 Sum_probs=45.5
Q ss_pred cEEEEEEE--cCccccchHHHHHHHHhhcceEEEEEeecCCCCCCChhhHHHHHHHHhcCCceEEEEEeCh
Q 002309 165 NAVSVIFV--DNEYGRNGVSALNDKLAERRCRISYKSGIPPESGVNTGYVMDLLVKVALMESRVIVLHVSP 233 (938)
Q Consensus 165 ~~vaii~~--d~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~lk~~~~~viv~~~~~ 233 (938)
++|+++.. ++.|.......+.+++++.|..+.... .. .+.......++.+...+.|.||+....
T Consensus 8 ~~Ig~i~~~~~~~~~~~~~~gi~~~~~~~g~~~~~~~---~~--~~~~~~~~~~~~l~~~~vdgii~~~~~ 73 (289)
T 1dbq_A 8 KSIGLLATSSEAAYFAEIIEAVEKNCFQKGYTLILGN---AW--NNLEKQRAYLSMMAQKRVDGLLVMCSE 73 (289)
T ss_dssp CEEEEEESCTTSHHHHHHHHHHHHHHHHHTCEEEEEE---CT--TCHHHHHHHHHHHHHTTCSEEEEECSC
T ss_pred CEEEEEeCCCCChHHHHHHHHHHHHHHHcCCeEEEEc---CC--CChHHHHHHHHHHHhCCCCEEEEEecc
Confidence 57888885 356777788899999999998876532 11 224455566777777889999887543
No 418
>3to5_A CHEY homolog; alpha(5)beta(5), chemotaxis, FLIM, phosphorylation, motor AC signaling protein; 1.65A {Vibrio cholerae}
Probab=21.24 E-value=3.1e+02 Score=23.75 Aligned_cols=58 Identities=7% Similarity=-0.012 Sum_probs=36.7
Q ss_pred hHHHHHHHHhhcceEEEEEeecCCCCCCChhhHHHHHHHHhcCCceEEEEE--eChhhHHHHHHHHHHcC
Q 002309 180 GVSALNDKLAERRCRISYKSGIPPESGVNTGYVMDLLVKVALMESRVIVLH--VSPSLGFQVFSVAKYLG 247 (938)
Q Consensus 180 ~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~lk~~~~~viv~~--~~~~~~~~~l~~a~~~g 247 (938)
....+...+++.|..++.. ..+-...+..+++..+|+|++. +..-+...++++.++..
T Consensus 24 ~r~~l~~~L~~~G~~~v~~----------a~~g~~al~~~~~~~~DlillD~~MP~mdG~el~~~ir~~~ 83 (134)
T 3to5_A 24 MRRIVKNLLRDLGFNNTQE----------ADDGLTALPMLKKGDFDFVVTDWNMPGMQGIDLLKNIRADE 83 (134)
T ss_dssp HHHHHHHHHHHTTCCCEEE----------ESSHHHHHHHHHHHCCSEEEEESCCSSSCHHHHHHHHHHST
T ss_pred HHHHHHHHHHHcCCcEEEE----------ECCHHHHHHHHHhCCCCEEEEcCCCCCCCHHHHHHHHHhCC
Confidence 4566677788888753321 1123345666666789999986 44456777888877643
No 419
>3hdv_A Response regulator; PSI-II, structural genomics, Pro structure initiative, NEW YORK SGX research center for STRU genomics, nysgxrc; 2.09A {Pseudomonas putida} SCOP: c.23.1.0
Probab=21.15 E-value=2.5e+02 Score=23.67 Aligned_cols=57 Identities=11% Similarity=0.058 Sum_probs=35.6
Q ss_pred hHHHHHHHHhhcceEEEEEeecCCCCCCChhhHHHHHHHHhcCC-ceEEEEEeC--hhhHHHHHHHHHHcC
Q 002309 180 GVSALNDKLAERRCRISYKSGIPPESGVNTGYVMDLLVKVALME-SRVIVLHVS--PSLGFQVFSVAKYLG 247 (938)
Q Consensus 180 ~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~lk~~~-~~viv~~~~--~~~~~~~l~~a~~~g 247 (938)
....+.+.+++.|..+... . +....+..+.+.. +++|++... ..+...++++.++.+
T Consensus 19 ~~~~l~~~L~~~g~~v~~~---~--------~~~~a~~~~~~~~~~dlvi~D~~l~~~~g~~~~~~l~~~~ 78 (136)
T 3hdv_A 19 NREALILYLKSRGIDAVGA---D--------GAEEARLYLHYQKRIGLMITDLRMQPESGLDLIRTIRASE 78 (136)
T ss_dssp HHHHHHHHHHHTTCCEEEE---S--------SHHHHHHHHHHCTTEEEEEECSCCSSSCHHHHHHHHHTST
T ss_pred HHHHHHHHHHHcCceEEEe---C--------CHHHHHHHHHhCCCCcEEEEeccCCCCCHHHHHHHHHhcC
Confidence 4566777777778766431 1 2234445555455 899888644 446777888888754
No 420
>3dnf_A ISPH, LYTB, 4-hydroxy-3-methylbut-2-ENYL diphosphate reductas; trilobal strucure, open alpha/beta, iron, iron-sulfur, isopr biosynthesis; 1.65A {Aquifex aeolicus}
Probab=21.13 E-value=1.3e+02 Score=30.53 Aligned_cols=52 Identities=21% Similarity=0.302 Sum_probs=39.9
Q ss_pred EEEccCCCChHHHHHHH-HHHHhc-CcEEEEcCCChhHHHHHHHhhccCCccEE
Q 002309 73 ITMQSSNCSGFIGMVEA-LRFMET-DIVAIIGPQCSTVAHIVSYVSNELQVPLL 124 (938)
Q Consensus 73 ~~~~D~~~~~~~a~~~a-~~li~~-~V~aviGp~~s~~~~~va~~~~~~~iP~I 124 (938)
+.+.|+=|+...--+.+ .+|..+ .+..|||...|+.+..+.++|...+.|..
T Consensus 186 ~~~~~tIC~AT~~RQ~av~~la~~~D~miVVGg~nSSNT~rL~eia~~~~~~ty 239 (297)
T 3dnf_A 186 VKVINTICNATSLRQESVKKLAPEVDVMIIIGGKNSGNTRRLYYISKELNPNTY 239 (297)
T ss_dssp EEEECCCCSHHHHHHHHHHHHGGGSSEEEEESCTTCHHHHHHHHHHHHHCSSEE
T ss_pred CCCCCCccHHHHHHHHHHHHHHhhCCEEEEECCCCCchhHHHHHHHHhcCCCEE
Confidence 34678888766655544 455554 78888999999999999999999888754
No 421
>2qmx_A Prephenate dehydratase; APC86053, L-Phe inhibition, PDT, CHL tepidum TLS, structural genomics, PSI-2, protein structure initiative; HET: PHE; 2.30A {Chlorobium tepidum tls}
Probab=21.03 E-value=2.3e+02 Score=28.45 Aligned_cols=78 Identities=17% Similarity=0.110 Sum_probs=56.6
Q ss_pred CCeeEE--eCchHHHHHHHhcccccccccccCCHHHHHHHHhcCCCCCceEEEEecc---------hhHHHHHhcCCcEE
Q 002309 701 DPIGYQ--EGSFAEYYLSQELNISKSRLVALRTPEDYAKALKDGPGKGGVAAVVDER---------PYVELFLSSQCSFR 769 (938)
Q Consensus 701 ~~i~~~--~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~a~i~~~---------~~~~~~~~~~~~l~ 769 (938)
.+|+++ .|++.+....+.+ .++++.+.++.++++.+ |+.+.-+... ..++.+.. .+++
T Consensus 7 ~~iaylGp~Gtfs~~Aa~~~f-----~~~p~~s~~~vf~aV~~----g~~d~gVvPiENS~~G~V~~t~DlL~~--~~l~ 75 (283)
T 2qmx_A 7 WLIAYQGEPGAYSEIAALRFG-----EPLPCESFDDVFSAVTE----QKADYAVIPIENSLGGSIHQNYDLLLR--RPVV 75 (283)
T ss_dssp CEEEEESCTTSHHHHHHHHHS-----EEEEESCHHHHHHHHHT----TSCSEEEEEEEESSSCBCHHHHHHHHH--SSEE
T ss_pred cEEEEECCCCCHHHHHHHHHh-----HhCcCCCHHHHHHHHHC----CCCCEEEEeehhcCCCccHHHHHHhhc--CCcE
Confidence 458885 5888777664433 57789999999999999 7776554432 23444444 5799
Q ss_pred EeCccccccceEeeecCCCc
Q 002309 770 IVGQEFTKSGWGFAFPRDSP 789 (938)
Q Consensus 770 ~~~~~~~~~~~~~~~~k~sp 789 (938)
++++.+.+-..++...+|..
T Consensus 76 I~gE~~l~I~h~Ll~~~g~~ 95 (283)
T 2qmx_A 76 ILAETFVKVEHCLLGLPGAS 95 (283)
T ss_dssp EEEEEEEECCCEEEECSSCC
T ss_pred EEEEEEEeeeeeEecCCCCC
Confidence 99999888889998888754
No 422
>1o1x_A Ribose-5-phosphate isomerase RPIB; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; 1.90A {Thermotoga maritima} SCOP: c.121.1.1
Probab=20.70 E-value=3.4e+02 Score=24.38 Aligned_cols=31 Identities=3% Similarity=-0.011 Sum_probs=25.2
Q ss_pred EcCccccchHHHHHHHHhhcceEEEEEeecC
Q 002309 172 VDNEYGRNGVSALNDKLAERRCRISYKSGIP 202 (938)
Q Consensus 172 ~d~~~g~~~~~~l~~~l~~~g~~v~~~~~~~ 202 (938)
-.|..|.+..+.+.+.|++.|.+|.......
T Consensus 18 gsDhaG~~lK~~i~~~L~~~G~eV~D~G~~~ 48 (155)
T 1o1x_A 18 ASDHAAFELKEKVKNYLLGKGIEVEDHGTYS 48 (155)
T ss_dssp EECSTTHHHHHHHHHHHHHTTCEEEECCCCS
T ss_pred eeCchHHHHHHHHHHHHHHCCCEEEEeCCCC
Confidence 4566788999999999999999988665443
No 423
>3o1i_D Periplasmic protein TORT; ligand free, two component sensor, periplasmic binding prote signaling protein; HET: PE4; 2.80A {Vibrio parahaemolyticus} PDB: 3o1h_B* 3o1j_C
Probab=20.67 E-value=1e+02 Score=31.07 Aligned_cols=80 Identities=8% Similarity=-0.041 Sum_probs=53.6
Q ss_pred cEEEEEEEc--CccccchHHHHHHHHhhcceEEEEEeecCCCCCCChhhHHHHHHHHhcCCceEEEEEeChhh-HHHHHH
Q 002309 165 NAVSVIFVD--NEYGRNGVSALNDKLAERRCRISYKSGIPPESGVNTGYVMDLLVKVALMESRVIVLHVSPSL-GFQVFS 241 (938)
Q Consensus 165 ~~vaii~~d--~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~lk~~~~~viv~~~~~~~-~~~~l~ 241 (938)
.+|+++..+ +.|.......+.+++++.|+.+.....-.. .+.......++.+...+.|.||+...... ....++
T Consensus 6 ~~Igvi~~~~~~~~~~~~~~g~~~~a~~~g~~~~~~~~~~~---~~~~~~~~~~~~~~~~~vdgiii~~~~~~~~~~~~~ 82 (304)
T 3o1i_D 6 EKICAIYPHLKDSYWLSVNYGMVSEAEKQGVNLRVLEAGGY---PNKSRQEQQLALCTQWGANAIILGTVDPHAYEHNLK 82 (304)
T ss_dssp CEEEEEESCSCSHHHHHHHHHHHHHHHHHTCEEEEEECSST---TCHHHHHHHHHHHHHHTCSEEEECCSSTTSSTTTHH
T ss_pred cEEEEEeCCCCCcHHHHHHHHHHHHHHHcCCeEEEEcCCCC---CCHHHHHHHHHHHHHcCCCEEEEeCCChhHHHHHHH
Confidence 578888854 567778888999999999998765432211 12445566777777788999998754433 234566
Q ss_pred HHHHcCC
Q 002309 242 VAKYLGM 248 (938)
Q Consensus 242 ~a~~~g~ 248 (938)
.+. .|+
T Consensus 83 ~~~-~~i 88 (304)
T 3o1i_D 83 SWV-GNT 88 (304)
T ss_dssp HHT-TTS
T ss_pred HHc-CCC
Confidence 666 564
No 424
>2qv7_A Diacylglycerol kinase DGKB; alpha-beta domain 1, beta sandwich domain 2, protein-ADP COM transferase; HET: ADP; 2.30A {Staphylococcus aureus} SCOP: e.52.1.2 PDB: 2qvl_A
Probab=20.62 E-value=3.4e+02 Score=27.94 Aligned_cols=75 Identities=11% Similarity=-0.025 Sum_probs=50.2
Q ss_pred CcEEEEEEEcCcccc----chHHHHHHHHhhcceEEEEEeecCCCCCCChhhHHHHHHHHhcCCceEEEEEeChhhHHHH
Q 002309 164 WNAVSVIFVDNEYGR----NGVSALNDKLAERRCRISYKSGIPPESGVNTGYVMDLLVKVALMESRVIVLHVSPSLGFQV 239 (938)
Q Consensus 164 w~~vaii~~d~~~g~----~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~lk~~~~~viv~~~~~~~~~~~ 239 (938)
-+++.+|+.-. -|. .....+.+.+++.|+.+.....-. ..+.....+++...++|.||+.+.-.....+
T Consensus 24 m~~i~vI~NP~-sg~~~~~~~~~~i~~~L~~~g~~~~~~~t~~------~~~a~~~~~~~~~~~~d~vvv~GGDGTv~~v 96 (337)
T 2qv7_A 24 RKRARIIYNPT-SGKEQFKRELPDALIKLEKAGYETSAYATEK------IGDATLEAERAMHENYDVLIAAGGDGTLNEV 96 (337)
T ss_dssp CEEEEEEECTT-STTSCHHHHHHHHHHHHHHTTEEEEEEECCS------TTHHHHHHHHHTTTTCSEEEEEECHHHHHHH
T ss_pred cceEEEEECCC-CCCCchHHHHHHHHHHHHHcCCeEEEEEecC------cchHHHHHHHHhhcCCCEEEEEcCchHHHHH
Confidence 46788888322 232 345778889999998766443222 2345555666666778999988888888888
Q ss_pred HHHHHH
Q 002309 240 FSVAKY 245 (938)
Q Consensus 240 l~~a~~ 245 (938)
+..+.+
T Consensus 97 ~~~l~~ 102 (337)
T 2qv7_A 97 VNGIAE 102 (337)
T ss_dssp HHHHTT
T ss_pred HHHHHh
Confidence 887744
No 425
>1xrs_B D-lysine 5,6-aminomutase beta subunit; TIM barrel, rossmann domain, PLP, cobalamin, 5'-deoxyad radical, adenosylcobalamin; HET: B12 PLP 5AD; 2.80A {Clostridium sticklandii} SCOP: c.23.6.1 d.230.4.1
Probab=20.49 E-value=5.1e+02 Score=25.60 Aligned_cols=85 Identities=11% Similarity=0.047 Sum_probs=52.6
Q ss_pred EEEEEEEcCccccchHHHHHHH--------Hhhc-ceEEEEEeecCCCCCCChhhHHHHHHHHhcCCceEEEEEeChh--
Q 002309 166 AVSVIFVDNEYGRNGVSALNDK--------LAER-RCRISYKSGIPPESGVNTGYVMDLLVKVALMESRVIVLHVSPS-- 234 (938)
Q Consensus 166 ~vaii~~d~~~g~~~~~~l~~~--------l~~~-g~~v~~~~~~~~~~~~~~~d~~~~l~~lk~~~~~viv~~~~~~-- 234 (938)
+|.+-....+.-.-+...+... |+.. |++|.+-.. . ......+..+++.++++|.+.+...
T Consensus 122 ~Vvlatv~gD~HdiG~~iv~~~k~~~~~~~L~~~~G~eVi~LG~---~-----vp~e~iv~aa~e~~~d~VglS~l~t~~ 193 (262)
T 1xrs_B 122 VVVGASTGTDAHTVGIDAIMNMKGYAGHYGLERYEMIDAYNLGS---Q-----VANEDFIKKAVELEADVLLVSQTVTQK 193 (262)
T ss_dssp EEEEEEBTTCCCCHHHHHHHSTTCBTTBCCGGGCTTEEEEECCS---S-----BCHHHHHHHHHHTTCSEEEEECCCCTT
T ss_pred EEEEEeCCCCCchHHHHHHhhhhcccchHHHHhcCCcEEEECCC---C-----CCHHHHHHHHHHcCCCEEEEEeecCCc
Confidence 4433334444444456666666 8899 999875332 1 1234566777778999999976443
Q ss_pred -----hHHHHHHHHHHcCCCCCCeEEEEe
Q 002309 235 -----LGFQVFSVAKYLGMMGNGYVWIAT 258 (938)
Q Consensus 235 -----~~~~~l~~a~~~g~~~~~~~wi~~ 258 (938)
....+++++++.|+...-.++++.
T Consensus 194 ~~~~~~~~~~i~~L~~~g~~~~i~vivGG 222 (262)
T 1xrs_B 194 NVHIQNMTHLIELLEAEGLRDRFVLLCGG 222 (262)
T ss_dssp SHHHHHHHHHHHHHHHTTCGGGSEEEEEC
T ss_pred cchHHHHHHHHHHHHhcCCCCCCEEEEEC
Confidence 355577788888864433455554
No 426
>4a29_A Engineered retro-aldol enzyme RA95.0; de novo protein, engineered enzyme, retro-aldolase, directed evolution; HET: 3NK MLT; 1.10A {Synthetic construct} PDB: 4a2s_A* 4a2r_A* 3tc7_A 3tc6_A 3nl8_A* 3nxf_A* 3o6y_X 3ud6_A* 1igs_A 1juk_A 1jul_A* 3hoj_A 1a53_A* 1lbf_A* 1lbl_A* 3nyz_A 3nz1_A* 3uy7_A 3uxd_A* 3uxa_A* ...
Probab=20.44 E-value=2.9e+02 Score=27.25 Aligned_cols=84 Identities=12% Similarity=0.050 Sum_probs=57.5
Q ss_pred HHHHHHhcCCcEEEEEEEcCccccchHHHHHHHHhhcceEEEEEeecCCCCCCChhhHHHHHHHHhcCCceEEEEEeC--
Q 002309 155 VAEMVSYYGWNAVSVIFVDNEYGRNGVSALNDKLAERRCRISYKSGIPPESGVNTGYVMDLLVKVALMESRVIVLHVS-- 232 (938)
Q Consensus 155 i~~~l~~~~w~~vaii~~d~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~lk~~~~~viv~~~~-- 232 (938)
++++.+ -|-.-+.+++ |..|..+..+.+.+.-+...+.|... .|-.+ .+ ++.+.+..++|.|++.+.
T Consensus 69 iA~~~~-~GA~aiSVLT-d~~~F~Gs~~~L~~vr~~v~lPvLrK-DFiid------~y--QI~eAr~~GADaILLI~a~L 137 (258)
T 4a29_A 69 YAKFME-RYAVGLSITT-EEKYFNGSYETLRKIASSVSIPILMS-DFIVK------ES--QIDDAYNLGADTVLLIVKIL 137 (258)
T ss_dssp HHHHHT-TTCSEEEEEC-CSTTTCCCHHHHHHHHTTCSSCEEEE-SCCCS------HH--HHHHHHHHTCSEEEEEGGGS
T ss_pred HHHHHh-CCCeEEEEeC-CCCCCCCCHHHHHHHHHhcCCCEeec-ccccc------HH--HHHHHHHcCCCeeehHHhhc
Confidence 344544 3667777776 66677777888877766666666533 33322 22 466677789999998654
Q ss_pred -hhhHHHHHHHHHHcCCC
Q 002309 233 -PSLGFQVFSVAKYLGMM 249 (938)
Q Consensus 233 -~~~~~~~l~~a~~~g~~ 249 (938)
......+.+.|.++||.
T Consensus 138 ~~~~l~~l~~~A~~lGl~ 155 (258)
T 4a29_A 138 TERELESLLEYARSYGME 155 (258)
T ss_dssp CHHHHHHHHHHHHHTTCC
T ss_pred CHHHHHHHHHHHHHHhHH
Confidence 45678899999999985
No 427
>3kto_A Response regulator receiver protein; PSI-II,structural genomics, protein structure initiative; 1.98A {Pseudoalteromonas atlantica T6C} SCOP: c.23.1.0
Probab=20.25 E-value=2.1e+02 Score=24.24 Aligned_cols=57 Identities=11% Similarity=0.110 Sum_probs=39.8
Q ss_pred hHHHHHHHHhhcceEEEEEeecCCCCCCChhhHHHHHHHHhcCCceEEEEEeCh----hhHHHHHHHHHHcC
Q 002309 180 GVSALNDKLAERRCRISYKSGIPPESGVNTGYVMDLLVKVALMESRVIVLHVSP----SLGFQVFSVAKYLG 247 (938)
Q Consensus 180 ~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~lk~~~~~viv~~~~~----~~~~~~l~~a~~~g 247 (938)
....+.+.+++.|..+.. ..+....+..+++..+++|++.... .+...+++..++.+
T Consensus 18 ~~~~l~~~L~~~g~~v~~-----------~~~~~~a~~~l~~~~~dlvi~D~~l~~~~~~g~~~~~~l~~~~ 78 (136)
T 3kto_A 18 ARAALSKLLSPLDVTIQC-----------FASAESFMRQQISDDAIGMIIEAHLEDKKDSGIELLETLVKRG 78 (136)
T ss_dssp HHHHHHHHHTTSSSEEEE-----------ESSHHHHTTSCCCTTEEEEEEETTGGGBTTHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHCCcEEEE-----------eCCHHHHHHHHhccCCCEEEEeCcCCCCCccHHHHHHHHHhCC
Confidence 556778888888887652 1134456667777889999997653 45677888888765
No 428
>2rjn_A Response regulator receiver:metal-dependent phosphohydrolase, HD subdomain; structural genomics, oceanospirillum SP. MED92; 2.10A {Neptuniibacter caesariensis}
Probab=20.21 E-value=3.7e+02 Score=23.21 Aligned_cols=57 Identities=11% Similarity=0.047 Sum_probs=38.5
Q ss_pred hHHHHHHHHhhcceEEEEEeecCCCCCCChhhHHHHHHHHhcCCceEEEEEeCh--hhHHHHHHHHHHcC
Q 002309 180 GVSALNDKLAERRCRISYKSGIPPESGVNTGYVMDLLVKVALMESRVIVLHVSP--SLGFQVFSVAKYLG 247 (938)
Q Consensus 180 ~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~lk~~~~~viv~~~~~--~~~~~~l~~a~~~g 247 (938)
....+...+++.|..+.. . .+....+..+++..+++|++.... .+...+++..++..
T Consensus 19 ~~~~l~~~L~~~g~~v~~---~--------~~~~~a~~~l~~~~~dlvi~d~~l~~~~g~~~~~~l~~~~ 77 (154)
T 2rjn_A 19 ILNSLKRLIKRLGCNIIT---F--------TSPLDALEALKGTSVQLVISDMRMPEMGGEVFLEQVAKSY 77 (154)
T ss_dssp HHHHHHHHHHTTTCEEEE---E--------SCHHHHHHHHTTSCCSEEEEESSCSSSCHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHcCCeEEE---e--------CCHHHHHHHHhcCCCCEEEEecCCCCCCHHHHHHHHHHhC
Confidence 556777888888877652 1 123456667777789999997553 35667787777654
No 429
>3iv7_A Alcohol dehydrogenase IV; NP_602249.1, iron-containing alcohol dehydrogenase, structur genomics, joint center for structural genomics; HET: MSE; 2.07A {Corynebacterium glutamicum}
Probab=20.16 E-value=71 Score=33.75 Aligned_cols=95 Identities=15% Similarity=0.002 Sum_probs=58.9
Q ss_pred HHHHHHHHhcCCcEEEEEEEcCccccchHHHHHHHHhhcceEEEEEeecCCCCCCChhhHHHHHHHHhcCCceEEEEEeC
Q 002309 153 TAVAEMVSYYGWNAVSVIFVDNEYGRNGVSALNDKLAERRCRISYKSGIPPESGVNTGYVMDLLVKVALMESRVIVLHVS 232 (938)
Q Consensus 153 ~ai~~~l~~~~w~~vaii~~d~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~lk~~~~~viv~~~~ 232 (938)
+.+.++++.++.+++.+|++...++ ..+.+.+.|+ .. +.+. .+.++ .+.+.+...++.+++.++|+||-.+.
T Consensus 26 ~~l~~~l~~~g~~rvliVtd~~~~~--~~~~v~~~L~--~~-~~f~-~v~~~--p~~~~v~~~~~~~~~~~~D~IIavGG 97 (364)
T 3iv7_A 26 AFLKQEVERRGSAKVMVIAGEREMS--IAHKVASEIE--VA-IWHD-EVVMH--VPIEVAERARAVATDNEIDLLVCVGG 97 (364)
T ss_dssp HHHHHHHHHHTCSSEEEECCGGGHH--HHHHHTTTSC--CS-EEEC-CCCTT--CBHHHHHHHHHHHHHTTCCEEEEEES
T ss_pred HHHHHHHHHcCCCEEEEEECCCHHH--HHHHHHHHcC--CC-EEEc-ceecC--CCHHHHHHHHHHHHhcCCCEEEEeCC
Confidence 4567788889999999998665432 3344444444 11 2232 22333 34677888888889999999988776
Q ss_pred hh--hHHHHHHHHHHcCCCCCCeEEEEeCc
Q 002309 233 PS--LGFQVFSVAKYLGMMGNGYVWIATDW 260 (938)
Q Consensus 233 ~~--~~~~~l~~a~~~g~~~~~~~wi~~~~ 260 (938)
+. ++..++... .+ ..++-|-|..
T Consensus 98 Gs~iD~aK~iA~~--~~---~P~i~IPTTa 122 (364)
T 3iv7_A 98 GSTIGLAKAIAMT--TA---LPIVAIPTTY 122 (364)
T ss_dssp HHHHHHHHHHHHH--HC---CCEEEEECSS
T ss_pred cHHHHHHHHHHhc--cC---CCEEEEcCCc
Confidence 54 455555442 23 3456666544
Done!