Query 002311
Match_columns 937
No_of_seqs 401 out of 3037
Neff 7.0
Searched_HMMs 46136
Date Thu Mar 28 21:14:23 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002311.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/002311hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK09800 putative hypoxanthine 100.0 6E-177 1E-181 1623.5 85.6 817 12-910 1-955 (956)
2 PLN00192 aldehyde oxidase 100.0 2E-174 4E-179 1652.0 91.1 765 150-920 570-1341(1344)
3 TIGR03313 Se_sel_red_Mo probab 100.0 6E-174 1E-178 1598.6 82.7 810 16-909 1-950 (951)
4 TIGR02969 mam_aldehyde_ox alde 100.0 1E-172 2E-177 1634.4 87.0 719 157-912 574-1311(1330)
5 PLN02906 xanthine dehydrogenas 100.0 3E-170 7E-175 1613.3 85.8 735 143-911 549-1312(1319)
6 TIGR03311 Se_dep_Molyb_1 selen 100.0 2E-167 5E-172 1531.9 75.1 772 14-905 1-847 (848)
7 TIGR02965 xanthine_xdhB xanthi 100.0 9E-161 2E-165 1466.4 76.3 721 159-910 1-756 (758)
8 KOG0430 Xanthine dehydrogenase 100.0 1E-160 3E-165 1411.2 73.9 730 147-911 516-1250(1257)
9 TIGR03194 4hydrxCoA_A 4-hydrox 100.0 3E-155 5E-160 1414.4 74.7 697 163-908 1-746 (746)
10 TIGR02416 CO_dehy_Mo_lg carbon 100.0 5E-155 1E-159 1417.5 76.0 704 167-906 1-769 (770)
11 PRK09970 xanthine dehydrogenas 100.0 7E-155 2E-159 1416.1 76.5 707 158-910 2-755 (759)
12 TIGR03196 pucD xanthine dehydr 100.0 6E-153 1E-157 1395.8 73.4 699 158-905 2-768 (768)
13 COG4631 XdhB Xanthine dehydrog 100.0 2E-140 3E-145 1150.7 54.1 724 156-910 16-773 (781)
14 COG1529 CoxL Aerobic-type carb 100.0 2E-126 5E-131 1156.1 68.8 702 157-909 4-730 (731)
15 PF02738 Ald_Xan_dh_C2: Molybd 100.0 2E-109 4E-114 988.2 47.2 510 307-831 16-547 (547)
16 PF01315 Ald_Xan_dh_C: Aldehyd 100.0 2.2E-29 4.7E-34 237.5 8.2 107 173-283 1-110 (111)
17 TIGR03193 4hydroxCoAred 4-hydr 99.9 1.6E-25 3.5E-30 217.5 9.0 87 14-101 2-148 (148)
18 COG2080 CoxS Aerobic-type carb 99.9 3.6E-25 7.7E-30 214.5 7.4 91 12-103 2-153 (156)
19 PRK09908 xanthine dehydrogenas 99.9 1.7E-24 3.7E-29 212.5 10.0 89 11-101 6-156 (159)
20 TIGR03198 pucE xanthine dehydr 99.9 2.6E-24 5.6E-29 210.9 9.0 89 13-102 3-150 (151)
21 PRK11433 aldehyde oxidoreducta 99.9 3.6E-23 7.9E-28 212.6 9.7 92 11-103 49-215 (217)
22 TIGR02963 xanthine_xdhA xanthi 99.8 1.9E-20 4.1E-25 217.8 7.9 88 14-101 1-158 (467)
23 COG4630 XdhA Xanthine dehydrog 99.8 8.6E-20 1.9E-24 195.7 7.3 92 11-102 6-167 (493)
24 COG1529 CoxL Aerobic-type carb 99.4 4.8E-15 1E-19 182.0 -4.1 337 150-539 176-536 (731)
25 PF01799 Fer2_2: [2Fe-2S] bind 99.2 4.6E-12 9.9E-17 110.2 0.7 37 63-99 28-75 (75)
26 PF13510 Fer2_4: 2Fe-2S iron-s 93.2 0.15 3.2E-06 45.6 5.0 53 12-68 2-75 (82)
27 PRK12386 fumarate reductase ir 93.2 0.076 1.6E-06 57.6 3.6 40 21-62 20-73 (251)
28 TIGR03194 4hydrxCoA_A 4-hydrox 90.2 1.8 4E-05 54.4 11.7 59 340-398 442-511 (746)
29 PF00111 Fer2: 2Fe-2S iron-sul 87.3 0.6 1.3E-05 40.8 3.4 34 16-51 1-35 (78)
30 PRK07440 hypothetical protein; 85.4 1.6 3.6E-05 37.8 5.0 44 11-60 2-46 (70)
31 COG2104 ThiS Sulfur transfer p 84.3 1.8 3.8E-05 37.4 4.6 44 12-61 1-45 (68)
32 PRK06083 sulfur carrier protei 84.1 2.1 4.6E-05 38.5 5.2 47 8-60 13-60 (84)
33 PRK08364 sulfur carrier protei 82.0 2.4 5.2E-05 36.6 4.6 45 13-61 4-51 (70)
34 cd00207 fer2 2Fe-2S iron-sulfu 80.7 1.3 2.8E-05 39.1 2.6 35 14-51 1-35 (84)
35 TIGR02416 CO_dehy_Mo_lg carbon 78.8 4.3 9.3E-05 51.4 7.3 70 343-414 476-556 (770)
36 PRK05863 sulfur carrier protei 78.6 3.4 7.3E-05 35.2 4.4 41 14-60 1-42 (65)
37 TIGR02965 xanthine_xdhB xanthi 77.0 3.7 8E-05 51.9 5.9 59 340-398 445-514 (758)
38 PRK09970 xanthine dehydrogenas 76.7 5.8 0.00012 50.2 7.6 60 339-398 457-528 (759)
39 TIGR03313 Se_sel_red_Mo probab 76.1 4.6 9.9E-05 52.2 6.5 59 340-398 658-727 (951)
40 PRK09800 putative hypoxanthine 76.0 5.9 0.00013 51.2 7.5 59 340-398 662-731 (956)
41 PRK05950 sdhB succinate dehydr 75.2 2.6 5.7E-05 45.3 3.5 41 21-62 18-72 (232)
42 PRK08053 sulfur carrier protei 73.7 5.6 0.00012 33.9 4.4 41 14-60 1-42 (66)
43 PF02738 Ald_Xan_dh_C2: Molybd 73.6 10 0.00023 46.0 8.5 56 609-683 50-105 (547)
44 TIGR01683 thiS thiamine biosyn 72.4 4.8 0.0001 34.0 3.7 39 16-60 1-40 (64)
45 PRK05659 sulfur carrier protei 72.2 5.6 0.00012 33.7 4.1 41 14-60 1-42 (66)
46 cd00565 ThiS ThiaminS ubiquiti 71.1 5.9 0.00013 33.6 4.0 41 15-61 1-42 (65)
47 PRK06944 sulfur carrier protei 70.9 6 0.00013 33.4 4.0 40 14-60 1-41 (65)
48 PRK12814 putative NADPH-depend 68.2 9.7 0.00021 47.4 6.7 53 13-69 3-73 (652)
49 TIGR03196 pucD xanthine dehydr 67.6 12 0.00026 47.4 7.4 59 609-686 184-242 (768)
50 PRK08493 NADH dehydrogenase su 67.4 10 0.00022 48.2 6.6 52 14-69 2-69 (819)
51 PF02594 DUF167: Uncharacteris 67.0 20 0.00043 31.8 6.5 53 611-671 17-69 (77)
52 PRK07696 sulfur carrier protei 66.8 9.3 0.0002 32.8 4.3 42 14-61 1-44 (67)
53 PRK06437 hypothetical protein; 66.4 9.3 0.0002 32.8 4.3 42 15-60 4-47 (67)
54 TIGR03311 Se_dep_Molyb_1 selen 64.2 11 0.00024 48.3 6.1 71 342-415 594-675 (848)
55 PTZ00305 NADH:ubiquinone oxido 63.3 17 0.00037 40.2 6.5 56 11-69 66-139 (297)
56 PRK12576 succinate dehydrogena 62.9 7.3 0.00016 43.2 3.7 42 21-63 25-79 (279)
57 TIGR00384 dhsB succinate dehyd 62.9 5.7 0.00012 42.3 2.8 41 21-62 15-68 (220)
58 PLN02906 xanthine dehydrogenas 62.7 17 0.00038 48.8 7.8 71 31-102 1-143 (1319)
59 TIGR02969 mam_aldehyde_ox alde 62.1 15 0.00031 49.5 6.9 90 13-102 2-162 (1330)
60 PRK12385 fumarate reductase ir 61.9 6.2 0.00013 42.8 2.9 41 21-62 25-78 (244)
61 PRK06488 sulfur carrier protei 59.2 15 0.00032 31.1 4.2 40 14-60 1-41 (65)
62 PLN00192 aldehyde oxidase 55.4 24 0.00052 47.6 7.2 99 11-109 3-184 (1344)
63 PRK07569 bidirectional hydroge 53.0 21 0.00046 38.4 5.2 53 13-69 3-73 (234)
64 PRK09129 NADH dehydrogenase su 52.8 24 0.00051 44.9 6.4 52 14-69 2-71 (776)
65 TIGR02008 fdx_plant ferredoxin 43.8 42 0.00091 30.9 4.9 36 13-51 4-40 (97)
66 CHL00134 petF ferredoxin; Vali 43.7 35 0.00076 31.6 4.4 36 13-51 5-42 (99)
67 PRK10713 2Fe-2S ferredoxin Yfa 41.6 54 0.0012 29.3 5.1 43 13-59 3-55 (84)
68 PRK11840 bifunctional sulfur c 37.9 37 0.00079 38.3 4.1 42 14-61 1-43 (326)
69 PRK09130 NADH dehydrogenase su 36.9 47 0.001 41.7 5.3 52 14-69 2-72 (687)
70 PRK11872 antC anthranilate dio 36.4 47 0.001 37.8 4.9 35 14-51 3-40 (340)
71 TIGR01973 NuoG NADH-quinone ox 36.0 36 0.00079 41.9 4.2 50 16-69 1-69 (603)
72 PRK00647 hypothetical protein; 35.4 80 0.0017 29.3 5.2 45 618-670 25-69 (96)
73 PF13085 Fer2_3: 2Fe-2S iron-s 33.7 32 0.00069 32.7 2.4 41 21-62 19-72 (110)
74 PF02594 DUF167: Uncharacteris 32.8 1E+02 0.0023 27.2 5.4 43 344-386 17-64 (77)
75 PRK05090 hypothetical protein; 30.4 1.1E+02 0.0023 28.4 5.2 45 618-670 30-74 (95)
76 PLN03136 Ferredoxin; Provision 28.9 67 0.0015 32.2 3.9 36 13-51 56-91 (148)
77 PRK01530 hypothetical protein; 28.2 1.1E+02 0.0025 28.8 5.0 44 619-670 38-81 (105)
78 PLN02593 adrenodoxin-like ferr 27.8 59 0.0013 31.1 3.2 36 13-51 2-38 (117)
79 PF06971 Put_DNA-bind_N: Putat 26.9 49 0.0011 26.8 2.1 17 522-538 32-48 (50)
80 COG3383 Uncharacterized anaero 26.7 1.1E+02 0.0024 38.1 5.8 54 12-69 4-73 (978)
81 PRK13552 frdB fumarate reducta 25.6 64 0.0014 34.9 3.4 41 21-62 24-77 (239)
82 PRK08640 sdhB succinate dehydr 25.5 46 0.001 36.2 2.3 41 21-62 23-83 (249)
83 PRK07860 NADH dehydrogenase su 25.3 1.1E+02 0.0024 39.2 5.9 53 13-69 4-74 (797)
84 PTZ00490 Ferredoxin superfamil 23.3 1E+02 0.0022 30.7 4.0 28 13-41 35-65 (143)
85 PRK01964 4-oxalocrotonate taut 23.1 73 0.0016 26.6 2.6 31 366-396 23-56 (64)
86 PF08529 NusA_N: NusA N-termin 22.9 1.2E+02 0.0025 29.3 4.3 23 755-777 42-64 (122)
87 PRK01530 hypothetical protein; 22.1 1.5E+02 0.0032 28.0 4.6 38 349-386 35-77 (105)
88 PRK06259 succinate dehydrogena 21.0 84 0.0018 37.6 3.5 42 21-63 21-75 (486)
89 COG1034 NuoG NADH dehydrogenas 20.3 1.2E+02 0.0025 38.1 4.5 63 14-80 2-83 (693)
No 1
>PRK09800 putative hypoxanthine oxidase; Provisional
Probab=100.00 E-value=5.8e-177 Score=1623.51 Aligned_cols=817 Identities=22% Similarity=0.305 Sum_probs=706.0
Q ss_pred eEEEEEECCEEEEEecCCCCCChHHHHhccCCCccCCCc-e---------EEEeCccccCC-------------------
Q 002311 12 HSVVFAVNGEKFEVSSVDPSTTLLEFLRYHTRFKSVKLG-C---------VLVDAEKTHRP------------------- 62 (937)
Q Consensus 12 ~~i~~~~Ng~~~~~~~~~p~~~Ll~~LR~~~~l~g~k~g-C---------vl~dg~~~~~~------------------- 62 (937)
|+|+|+|||+++++ +++|+++||++||+ +||||+|.| | |||||+++++|
T Consensus 1 ~~i~~~vNg~~~~~-~~~~~~~l~~~LR~-~~~~~~k~g~c~~g~CGaCtv~~dg~~v~sC~~~~~~~~g~~i~Tvegl~ 78 (956)
T PRK09800 1 MIIHFTLNGAPQEL-TVNPGENVQKLLFN-MGMHSVRNSDDGFGFAGSDAIIFNGNIVNASLLIAAQLEKADIRTAESLG 78 (956)
T ss_pred CeEEEEECCEEEEE-ecCCCCCHHHHHHH-CCCCccccCCCCcccCCCCEEEECCeEEeHHHHHHHHcCCCEEEecCCcC
Confidence 46899999999999 69999999999999 999999998 6 99999999765
Q ss_pred ---------------------CCCCCCC-----------CCCHHHHHHHHhCCcccCCCCHHHHHHHHHHhhhccccccc
Q 002311 63 ---------------------EPPPGFS-----------KLTISEAEKAIAGNLCRCTGYRPIADACKSFAADVDIEDLG 110 (937)
Q Consensus 63 ---------------------~~~pg~~-----------~p~~~ei~~~l~gnlCRCtgy~~i~~A~~~~~~~~~~~~~~ 110 (937)
.|||||+ +|+++||+++|+|||||||||.+|++||+.++...+.
T Consensus 79 ~~~~~~~~q~af~~~~~~QCG~CtpG~~m~~~~ll~~~~~p~~~~i~~~l~gnlCRCtgy~~i~~av~~~~~~~~~---- 154 (956)
T PRK09800 79 KWNELSLVQQAMVDVGVVQSGYNDPAAALIITDLLDRIAAPTREEIDDALSGLFSRDAGWQQYYQVIELAVARKNN---- 154 (956)
T ss_pred CCCCCCHHHHHHHHcCCCcCCCChHHHHHHHHHHHhcCCCCCHHHHHHHHhhchhccCCcHHHHHHHHHHHHhhcc----
Confidence 2788885 6899999999999999999999999999988754321
Q ss_pred ccccCCCcchhhhhhhhhcccccccchhhhhccchhhhhhccccCCCCCCCCccCCcccccccccccccccCCCCCCcEE
Q 002311 111 DRLCGYSNSVLLKDSLMQQNHEQFDKSKVLTLLSSAEQVVRLSREYFPVGEPIPKSGAALQASGEAIFVDDIPSPINCLY 190 (937)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~~~~R~d~~~kvtG~a~Y~~Di~~~pgmL~ 190 (937)
. . .+. . ...+.++++++||++++|+|+++||||+++|++|+. +|||||
T Consensus 155 ~-----------------~-~~~-~------------~~~~~~~~~~~VGk~~~R~d~~~kvtG~a~Y~~D~~-~pgmL~ 202 (956)
T PRK09800 155 P-----------------Q-ATI-D------------IAPTFRDDLEVIGKHYPKTDAAKMVQAKPCYVEDRV-TADACV 202 (956)
T ss_pred c-----------------c-ccc-c------------cccccccccccCCCCCCCcChHhhCcccccccccCC-CCCCEE
Confidence 0 0 000 0 001123467789999999999999999999999996 789999
Q ss_pred EEEEecCCCCeEEEEEecCCcC-CCCEEEEEeccCCCcc-----CCCccCCCCCCCcccCCCCceeecCCcEEEEEeCCH
Q 002311 191 GAFVYSTKPLVRIRSVEIKSKS-LPGVSAFLSYKDIPEA-----GQNIGSRTKFGPEPLFADELTHCAGQPIAFVVADTQ 264 (937)
Q Consensus 191 a~~vrSp~ahArI~sID~s~A~-~pGVvaV~T~~Dip~~-----g~~~~~~~~~~~~p~la~~~Vry~G~pVA~VvAet~ 264 (937)
++++|||++||||+|||+|+|+ ||||++|+|++|+|.. +...+ ....+.++|++++|||+|||||+|||+|+
T Consensus 203 a~vvrSp~ahArI~sID~s~A~a~pGV~~Vvt~~Dvp~~~~~~~~~~~~--~~~~~~~~l~~~~Vry~G~~vaaVvAet~ 280 (956)
T PRK09800 203 IKMLRSPHAHALITHLDVSKAEALPGVVHVITHLNCPDIYYTPGGQSAP--EPSPLDRRMFGKKMRHVGDRVAAVVAESE 280 (956)
T ss_pred EEEeecCCCcEEEeeeEHHHHHhCCCeEEEEcHHHCCcccccccCcCCC--CCCCCCccccCCeEEEcCCeEEEEEECCH
Confidence 9999999999999999999999 9999999999999831 11111 01122445669999999999999999999
Q ss_pred HHHHHhcccceEEEccCCCCCCcCCHHHHhcCCCC--ccc------------------------------------CCcc
Q 002311 265 KIANRAADLAVVDYDVGNLEPPILSVEEAVGRSSF--FEV------------------------------------PSFL 306 (937)
Q Consensus 265 ~~A~~Aa~lI~Vey~~e~L~p~v~d~~~Al~~~a~--~~~------------------------------------~~~~ 306 (937)
++|++|+++|+||| |+| |+++|+++||+++++ |+. ++|+
T Consensus 281 ~~A~~A~~~V~Vey--e~L-p~v~d~~~Al~~~a~~vh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Nv 357 (956)
T PRK09800 281 EIALEALKLIDVEY--EVL-KPVMSIDEAMAEDAPVVHDEPVVYVAGAPDTLEDDNSHAAQRGEHMIINFPIGSRPRKNI 357 (956)
T ss_pred HHHHHHhcCCceEE--EeC-CccCCHHHHhcCCCceecccccccccccccccccccccccccccccccccccccCCCCce
Confidence 99999999999999 899 999999999999885 321 1343
Q ss_pred ---cccccCChhhhcccCCeEEEEEEEEecccccCCccCCceEEEECCCCcEEEEeCCCChHHHHHHHHHHhCCCCCcEE
Q 002311 307 ---YPKSVGDISKGMNEADHKILSAEVKLGSQYYFYMETQTALAVPDEDNCLVVYSSIQCPEYAHATIARCLGIPEHNVR 383 (937)
Q Consensus 307 ---~~~~~Gd~e~af~~A~~vvve~~~~~~~~~h~~mEp~~avA~~~~dg~l~V~~stQ~p~~~r~~lA~~Lglp~~kVr 383 (937)
.....||++++|++|+++ ||++|++++|+|+||||++++|+||+ ++|+||+|||+||.+|+.||++||||++|||
T Consensus 358 ~~~~~~~~Gd~~~af~~a~~v-ve~~y~~~~~~H~~mEp~~aiA~~d~-~~l~v~~stQ~p~~~r~~vA~~LGlp~~kVr 435 (956)
T PRK09800 358 AASIHGHIGDMDKGFADADVI-IERTYNSTQAQQCPTETHICFTRMDG-DRLVIHASTQVPWHLRRQVARLVGMKQHKVH 435 (956)
T ss_pred eeeccccCCCHHHHHhhCCEE-EEEEEEeCCcccccCCCceEEEEEeC-CeeEEEECCCcHHHHHHHHHHHHCCCHHHeE
Confidence 234679999999999996 99999999999999999999999985 5899999999999999999999999999999
Q ss_pred EEeccCCCCCCCCCcccchHHHHHHHHHHhCCCCEEEEcChhhhhhhcCCCCceEEEEEEEECCCCcEEEEEEEEEeeCC
Q 002311 384 VITRRVGGGFGGKAIKAMPVATACALAAYKLCRPVRIYVNRKTDMVMAGGRHPMKIEYNVGFKSNGKITALQLNILIDAG 463 (937)
Q Consensus 384 V~~~~vGGgFG~K~~~~~~~~~~aAlaA~~~gRPVk~~~~R~E~~~~~~~R~~~~~~~k~g~d~dG~i~A~~~~~~~d~G 463 (937)
|+.+++|||||+|... . .+..+|++|+++||||||+|||+|+|.++.+||++.+++|+|+|+||+|+|++++++.|+|
T Consensus 436 V~~~~vGGgFG~K~~~-~-~e~~aA~aA~~~grPVkl~~tReE~~~~~~~R~~~~~~~k~g~d~dG~I~a~~~~~~~d~G 513 (956)
T PRK09800 436 VIKERVGGGFGSKQDI-L-LEEVCAWATCVTGRPVLFRYTREEEFIANTSRHVAKVTVKLGAKKDGRLTAVKMDFRANTG 513 (956)
T ss_pred EEcCCCCccCcCcccc-c-HHHHHHHHHHHhCCCEEEEeeHHHHhhCcCCCCceEEEEEEEECCCCCEEEEEEEEEEcCC
Confidence 9999999999999853 2 4456789999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCch-hhhhhccCCCCccccEEEEEEEeecCCCCCCccCCCChhHHHHHHHHHHHHHHHHcCCCHHHHHHhhcCC
Q 002311 464 QYPDVSPNI-PAYMIGALKKYDWGALHFDIKVCRTNLPSRTAMRAPGEVQGSFIAEAVIEHVASTLSMEVDFVRSINLHT 542 (937)
Q Consensus 464 ay~~~~~~~-~~~~~~~~~~Y~ipn~~~~~~~v~TN~~p~ga~RG~G~pq~~fa~E~~mD~lA~~lG~DP~e~R~kNl~~ 542 (937)
+|.+++..+ ........++|+|||++++.+.|+||++|+|+|||||.||+.||+|++||++|++|||||+|||+||+++
T Consensus 514 ay~~~~~~v~~~~~~~~~~~Y~ipn~~~~~~~v~TN~~p~ga~RG~G~pq~~fa~Es~mDelA~~lg~DPve~R~rN~~~ 593 (956)
T PRK09800 514 PYGNHSLTVPCNGPALSLPLYPCDNVDFQVTTYYSNICPNGAYQGYGAPKGNFAITMALAELAEQLQIDQLEIIERNRVH 593 (956)
T ss_pred cCCCcchHHHHHHHhhcCcCcccceEEEEEEEEECCCCCCCCcCCCCcchHHHHHHHHHHHHHHHhCcCHHHHHHHhCCC
Confidence 998876533 3334455689999999999999999999999999999999999999999999999999999999999998
Q ss_pred CCCccccc------cCCCCcc-cc-CCHHHHHHHHHHhcCChhhHHHHHHHhhccCCcceeeeecceEeecCC---CCCc
Q 002311 543 HNSLNLFY------ESSAGEL-EE-YTIPLIWDRLAVSSSFNQRTEVIKEFNRSNLWRKKGISRVPIVYDVPL---MSTP 611 (937)
Q Consensus 543 ~~~~~~~~------~~~~g~~-~~-~~~~~~l~~~~~~~~~~~r~~~~~~~~~~~~~~~~Gig~a~~~~~~g~---~~~~ 611 (937)
+++....+ ..+.+.+ ++ +.+.+||+++++.++|.++++ ..++|+ +|+|+++..++.+. .++.
T Consensus 594 ~gd~~~~~~~~~~g~~~~~~~~~~s~~~~~~L~~~~e~~~w~~~~~------~~g~~~-~G~Gia~~~~~~g~~~~~~~~ 666 (956)
T PRK09800 594 EGQELKILGAIGEGKAPTSVPSAASCALEEILRQGREMIQWSSPKP------QNGDWH-IGRGVAIIMQKSGIPDIDQAN 666 (956)
T ss_pred CCcccccccccccccccccCccccCCCHHHHHHHHHHhcCcchhhh------hcCCCe-eEEEEEEEEEcccCCCCCCce
Confidence 76532100 0111222 33 389999999999999986432 234554 36666666554443 2578
Q ss_pred eEEEEccCCcEEEEeccccccccHHHHHHHHHHHHhcccccCCCCCCCCcEEEecCCCccccCCCCCcccchhhhhHHHH
Q 002311 612 GKVSILSDGSVVVEVGGIELGQGLWTKVKQMAAFALSSIQCGGMGDLLETVRVIQADTLSVIQGGLTAGSTKSEASCQAV 691 (937)
Q Consensus 612 a~v~l~~DG~v~v~~g~~e~GqG~~T~~aqiaAe~Lgi~~~~~~~~~~~~I~v~~~dT~~~p~~~~t~aSr~t~~~g~Av 691 (937)
+.|+|++||+|+|++|++|||||++|+++||+||+||+ |+|+|+|..+||+.+|++++|+|||+|+++|+||
T Consensus 667 a~v~l~~dGsv~v~~g~~e~GqG~~T~~~QiaAe~LGi--------p~d~V~v~~~DT~~~p~~~gt~aSr~t~~~G~Av 738 (956)
T PRK09800 667 CMIKLESDGTFIVHSGGADIGTGLDTVVTKLAAEVLHC--------PPQDVHVISGDTDHALFDKGAYASSGTCFSGNAA 738 (956)
T ss_pred EEEEECCCceEEEEECCCCCCccHHHHHHHHHHHHHCC--------CceeEEEEeCCCCCCCCCCCcchhhhHHHHHHHH
Confidence 99999999999999999999999999999999999999 9999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhc----------------cCccCHHHHHHHHHhc--CceeEEEEEecCCCCccccccEEEE
Q 002311 692 RNCCKILVERLTPLRERLQAQ----------------MGSVKWETLIQQAYLQ--SVSLSASSLYLPDFTSMKYLNYGAA 753 (937)
Q Consensus 692 ~~Aa~~l~~~l~~~aa~~~~~----------------~~~~~~~~~~~~~~~~--~~~l~~~~~~~~~~~~~~~~~~ga~ 753 (937)
++||++||+||+.+++++++. .+.++|.+++..++.. ...+.+.++|.++. .+|+|++|
T Consensus 739 ~~Aa~~l~~kl~~~aa~~l~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~---~~~~~~a~ 815 (956)
T PRK09800 739 RLAAENLREKILFHGAQMLGEPVADVQLATPGVVRGKKGEVSFGDIAHKGETGTGFGSLVGTGSYITPD---FAFPYGAN 815 (956)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCHHHEEEecCCEEeCCCCcccHHHHHHHHhcCCCCCCeEEEEEecCCC---CCcceEEE
Confidence 999999999999998877642 1236799987654432 22577777776532 25799999
Q ss_pred EEEEEEECCCCcEEEEEEEEEecCCccCCccccchhhhchhHHHHHHHhccCceecCCCccccCCCCCCCCCCCCCCCCe
Q 002311 754 VSEVEINLLTGETTIVQSDIIYDCGQSLNPAVDLGQIEGSFVQGIGFFMLEEYPTNSDGLVVSEGTWTYKIPTLDTIPKQ 833 (937)
Q Consensus 754 ~aeVeVD~~TG~v~V~r~~~v~D~G~vINP~~v~gQi~Ggi~qGiG~AL~Ee~~~d~~G~~l~~~~~dY~iP~~~diP~~ 833 (937)
++|||||++||+|+|+||++++|||++|||.+++||||||++||||+||+||+.||++|++++.||++|+||++.|+|.+
T Consensus 816 ~aeVeVD~~TG~vkvl~~~~~~D~G~vINP~~v~gQieGgi~qGiG~AL~Ee~~~d~~G~~~~~~l~~Y~iPt~~DiP~~ 895 (956)
T PRK09800 816 FAEVAVNTRTGEIRLDKFYALLDCGTPVNPELALGQIYGATLRAIGHSMSEEIIYDAEGHPLTRDLRSYGAPKIGDIPRD 895 (956)
T ss_pred EEEEEEECCCCcEEEEEEEEEEECCccCCHHHHHHHHHHHHHHHHHHHHhCCcEECCCCcCCCCCcccCCCCChhhCCCc
Confidence 99999999999999999999999999999999999999999999999999999999899999999999999999999944
Q ss_pred eEEEEecCCCCCCCCCCccccCCCCccchhhHHHHHHHHHHHHHHhhhcccccCCCCcccccCCCCCHHHHHHhcCC
Q 002311 834 FNVEILNSGHHKKRVLSSKASGEPPLLLAVSVHCATRAAIREARKQLLSWSQLDQSDLTFDLEVPATVQVVKELCGP 910 (937)
Q Consensus 834 i~v~~~e~~~~p~gp~GaKGvGE~~~~~~~av~~Ai~nAi~~A~~~~~~~~~~~g~~~~~~~~lP~Tpe~v~~a~~~ 910 (937)
|+++++|++ +|.+|||+||+||+++++ +++||+|||++|+| ++++++|+|||+||++|+.
T Consensus 896 i~v~~ve~~-~~~~p~GaKgvGE~~~~~---~a~AIanAI~~A~G-------------~r~~~lP~tpe~vl~al~~ 955 (956)
T PRK09800 896 FRAVLVPSD-DKVGPFGAKSISEIGVNG---AAPAIATAIHDACG-------------IWLREWHFTPEKILTALEK 955 (956)
T ss_pred eEEEEEcCC-CCCCCCCCcccCCCcccc---hHHHHHHHHHHHhC-------------cCcccCCCCHHHHHHHHhh
Confidence 999999875 678999999999999998 66799999999995 6789999999999998864
No 2
>PLN00192 aldehyde oxidase
Probab=100.00 E-value=1.8e-174 Score=1651.96 Aligned_cols=765 Identities=78% Similarity=1.225 Sum_probs=680.0
Q ss_pred hccccCCCCCCCCccCCcccccccccccccccCCCCCCcEEEEEEecCCCCeEEEEEecCCcC-CCCEEEEEeccCCCcc
Q 002311 150 VRLSREYFPVGEPIPKSGAALQASGEAIFVDDIPSPINCLYGAFVYSTKPLVRIRSVEIKSKS-LPGVSAFLSYKDIPEA 228 (937)
Q Consensus 150 ~~~~~~~~~vG~~~~R~d~~~kvtG~a~Y~~Di~~~pgmL~a~~vrSp~ahArI~sID~s~A~-~pGVvaV~T~~Dip~~ 228 (937)
|...+++++||++++|+|+.+|+||+++|++|+..+|||||+++||||++||||++||+|+|+ +|||++|+|++|+|..
T Consensus 570 ~~~~~~~~~vG~~~~r~d~~~kvtG~a~Y~~Di~~~pgmL~a~~vrSp~ahArI~sID~s~A~~~pGV~aV~t~~Dip~~ 649 (1344)
T PLN00192 570 VEENNEYHPVGEPIKKVGAALQASGEAVYVDDIPSPKNCLYGAFIYSTKPLARVKGIKFKSNLVPQGVLAVITFKDIPKG 649 (1344)
T ss_pred eecccccCcCCCCCcChhhHhhcccceecccccCCCCCCEEEEEEecCCCceEEEEEEhHHhhcCCCcEEEEchHHcCcc
Confidence 333455788999999999999999999999999645899999999999999999999999999 9999999999999832
Q ss_pred CCCccCCCCCCCcccCCCCceeecCCcEEEEEeCCHHHHHHhcccceEEEccCC--CCCCcCCHHHHhcCCCCcccCCcc
Q 002311 229 GQNIGSRTKFGPEPLFADELTHCAGQPIAFVVADTQKIANRAADLAVVDYDVGN--LEPPILSVEEAVGRSSFFEVPSFL 306 (937)
Q Consensus 229 g~~~~~~~~~~~~p~la~~~Vry~G~pVA~VvAet~~~A~~Aa~lI~Vey~~e~--L~p~v~d~~~Al~~~a~~~~~~~~ 306 (937)
+.+.+......++|+|++++|||+|||||+|||+|+++|++|+++|+|+| |+ |.|+++|+++|++++++++.+...
T Consensus 650 ~~~~g~~~~~~~~~~la~~~Vr~~Gq~Va~VvA~t~~~A~~Aa~~V~VeY--e~~~l~p~v~~i~~Al~~~s~~~~~~~~ 727 (1344)
T PLN00192 650 GQNIGSKTIFGPEPLFADEVTRCAGQRIALVVADTQKHADMAANLAVVEY--DTENLEPPILTVEDAVKRSSLFEVPPFL 727 (1344)
T ss_pred cccCCCCCCCCCceeccCCEEEEcCCeEEEEEECCHHHHHHHhccCEEEE--ecCCCCCcccCHHHHhcCCCCcccChhh
Confidence 22332211235889999999999999999999999999999999999999 64 338899999999998865422212
Q ss_pred cccccCChhhhcccCCeEEEEEEEEecccccCCccCCceEEEECCCCcEEEEeCCCChHHHHHHHHHHhCCCCCcEEEEe
Q 002311 307 YPKSVGDISKGMNEADHKILSAEVKLGSQYYFYMETQTALAVPDEDNCLVVYSSIQCPEYAHATIARCLGIPEHNVRVIT 386 (937)
Q Consensus 307 ~~~~~Gd~e~af~~A~~vvve~~~~~~~~~h~~mEp~~avA~~~~dg~l~V~~stQ~p~~~r~~lA~~Lglp~~kVrV~~ 386 (937)
.....||++++|++|+++++|++|++++|+|+||||++|+|+|++||+|+||+|||+|+.+|..||++||||++||||++
T Consensus 728 ~~~~~GD~~~af~~a~~vv~e~~~~~~~q~H~~mEp~~~vA~~~~dg~l~V~~sTQ~p~~~r~~vA~~Lgip~~~VrV~~ 807 (1344)
T PLN00192 728 YPKPVGDISKGMAEADHKILSAEIKLGSQYYFYMETQTALALPDEDNCIVVYSSTQCPEYVHSVIARCLGIPEHNVRVIT 807 (1344)
T ss_pred cccccCCHHHHhccCCeEEEEEEEEECCEeeeeccCceEEEEEcCCCCEEEEECCCCHHHHHHHHHHHhCCChHHEEEEe
Confidence 23467999999999999745999999999999999999999999888899999999999999999999999999999999
Q ss_pred ccCCCCCCCCCcccchHHHHHHHHHHhCCCCEEEEcChhhhhhhcCCCCceEEEEEEEECCCCcEEEEEEEEEeeCCCCC
Q 002311 387 RRVGGGFGGKAIKAMPVATACALAAYKLCRPVRIYVNRKTDMVMAGGRHPMKIEYNVGFKSNGKITALQLNILIDAGQYP 466 (937)
Q Consensus 387 ~~vGGgFG~K~~~~~~~~~~aAlaA~~~gRPVk~~~~R~E~~~~~~~R~~~~~~~k~g~d~dG~i~A~~~~~~~d~Gay~ 466 (937)
+++|||||+|.....+++++||++|+++||||||+|||+|+|+++++|||+.+++|+|+|+||+|+|++++++.|+|+|.
T Consensus 808 ~~vGGgFGgK~~~~~~~~~~aAlaA~~~gRPVr~~~sR~Edm~~~~~R~~~~~~~k~g~~~dG~I~a~~~~~~~d~Ga~~ 887 (1344)
T PLN00192 808 RRVGGGFGGKAVKSMPVATACALAAFKLQRPVRMYLNRKTDMIMAGGRHPMKITYSVGFKSDGKITALHLDILINAGISP 887 (1344)
T ss_pred cccccCCCccccccchHHHHHHHHHHHhCCCEEEEecHHHHhhhcCCcCceEEEEEEEECCCCCEEEEEEEEEEecccCC
Confidence 99999999998655677889999999999999999999999999999999999999999999999999999999999998
Q ss_pred CCCCchhhhhhccCCCCccccEEEEEEEeecCCCCCCccCCCChhHHHHHHHHHHHHHHHHcCCCHHHHHHhhcCCCCCc
Q 002311 467 DVSPNIPAYMIGALKKYDWGALHFDIKVCRTNLPSRTAMRAPGEVQGSFIAEAVIEHVASTLSMEVDFVRSINLHTHNSL 546 (937)
Q Consensus 467 ~~~~~~~~~~~~~~~~Y~ipn~~~~~~~v~TN~~p~ga~RG~G~pq~~fa~E~~mD~lA~~lG~DP~e~R~kNl~~~~~~ 546 (937)
+++..+...+.+..++|+|||++++++.|+||++|+|||||||.||++|++|++||++|++|||||+|||++|++++++.
T Consensus 888 ~~~~~~~~~~~~~~~~Y~ipn~~~~~~~v~TN~~~~ga~RG~G~pq~~fa~E~~mD~lA~~lg~DP~e~R~~Nl~~~~~~ 967 (1344)
T PLN00192 888 DISPIMPRNIIGALKKYDWGALSFDIKVCKTNLSSRSAMRAPGEVQGSYIAEAIIEHVASTLSMDVDSVRKINLHTYESL 967 (1344)
T ss_pred CcchHHHHHHhhcCCCcCCCceEEEEEEEECCCCCCCcccCCCHHHHHHHHHHHHHHHHHHhCcCHHHHHHhcCCCcccc
Confidence 77655554555667999999999999999999999999999999999999999999999999999999999999987655
Q ss_pred cccccCCCCccccCCHHHHHHHHHHhcCChhhHHHHHHHhhccCCcceeeeecceEeecCCCCCceEEEEccCCcEEEEe
Q 002311 547 NLFYESSAGELEEYTIPLIWDRLAVSSSFNQRTEVIKEFNRSNLWRKKGISRVPIVYDVPLMSTPGKVSILSDGSVVVEV 626 (937)
Q Consensus 547 ~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~r~~~~~~~~~~~~~~~~Gig~a~~~~~~g~~~~~a~v~l~~DG~v~v~~ 626 (937)
..||..+.|...+..+++||+++++.++|++|++++.+||+.++|++||+|+++..++++..++.+.|+|++||+|+|.+
T Consensus 968 ~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~r~~~~~~~n~~~~~~krGig~~~~~~~~~~~~~~a~v~i~~DGsv~v~~ 1047 (1344)
T PLN00192 968 KLFYGDSAGEPSEYTLPSIWDKLASSSEFKQRTEMVKEFNRSNKWKKRGISRVPIVHEVMLRPTPGKVSILSDGSIAVEV 1047 (1344)
T ss_pred ccCCCCcccccCCCcHHHHHHHHHHhcChHHHHHHHHHHhhcCCceEEEEEEEEEEEeccccCCceEEEEeCCceEEEEE
Confidence 44565554543344999999999999999998888888888899999999999999998888889999999999999999
Q ss_pred ccccccccHHHHHHHHHHHHhcccccCCCCCCCCcEEEecCCCccccCCCCCcccchhhhhHHHHHHHHHHHHHHHHHHH
Q 002311 627 GGIELGQGLWTKVKQMAAFALSSIQCGGMGDLLETVRVIQADTLSVIQGGLTAGSTKSEASCQAVRNCCKILVERLTPLR 706 (937)
Q Consensus 627 g~~e~GqG~~T~~aqiaAe~Lgi~~~~~~~~~~~~I~v~~~dT~~~p~~~~t~aSr~t~~~g~Av~~Aa~~l~~~l~~~a 706 (937)
|++|||||++|+++||||++||+++.+...-|+|+|+|..+||+.+|++++|+|||+|+++|+||++||++|++||++++
T Consensus 1048 G~~e~GQG~~T~~aQiaA~~LGi~~~~~~~ip~e~I~v~~~dT~~~p~~~~t~gSr~t~~~G~Av~~Ac~~l~~rl~~~a 1127 (1344)
T PLN00192 1048 GGIEIGQGLWTKVKQMAAFGLGMIKCDGGEDLLDKIRVIQSDTLSMIQGGFTAGSTTSESSCEAVRLCCVILVERLKPIK 1127 (1344)
T ss_pred CCCCCCCCHHHHHHHHHHHHhCCccccccCCChhhEEEEecCCCCCCCCCCCchhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999994111000008999999999999999999999999999999999999999999999999
Q ss_pred HHHHhccCccCHHHHHHHHHhcCceeEEEEEecCCCCccccccEEEEEEEEEEECCCCcEEEEEEEEEecCCccCCcccc
Q 002311 707 ERLQAQMGSVKWETLIQQAYLQSVSLSASSLYLPDFTSMKYLNYGAAVSEVEINLLTGETTIVQSDIIYDCGQSLNPAVD 786 (937)
Q Consensus 707 a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ga~~aeVeVD~~TG~v~V~r~~~v~D~G~vINP~~v 786 (937)
++++..++.++|.+++..++..+.+|.++++|.+....+.||+||+|++|||||++||+++|+|+++++|||++|||.++
T Consensus 1128 ~~~~~~~~~~~~~~~~~~a~~~~~~L~a~~~~~~~~~~~~y~~~ga~~~eVEVD~~TG~v~vlr~~~~~D~G~~INP~i~ 1207 (1344)
T PLN00192 1128 ERLQEQMGSVTWDMLISQAYMQSVNLSASSYYTPDPSSMEYLNYGAAVSEVEVDLLTGETTILRSDIIYDCGQSLNPAVD 1207 (1344)
T ss_pred HHHhccCCCcCHHHHHHHhcCCCCCeEEEEEECCCCCCccccceeEEEEEEEEecCCCcEEEEEEEEEEecCcccCHHHH
Confidence 88866667899999987765555679999999764222456899999999999999999999999999999999999999
Q ss_pred chhhhchhHHHHHHHhccCceecCCCccccCCCCCCCCCCCCCCCCeeEEEEecCCCCCCCCCCccccCCCCccchhhHH
Q 002311 787 LGQIEGSFVQGIGFFMLEEYPTNSDGLVVSEGTWTYKIPTLDTIPKQFNVEILNSGHHKKRVLSSKASGEPPLLLAVSVH 866 (937)
Q Consensus 787 ~gQi~Ggi~qGiG~AL~Ee~~~d~~G~~l~~~~~dY~iP~~~diP~~i~v~~~e~~~~p~gp~GaKGvGE~~~~~~~av~ 866 (937)
+||||||++||||++|+||+.||++|+++|++|+||+||++.|+|.+|++.+++++.+|.+|||+||+||++++++++++
T Consensus 1208 ~GQIeGg~vqGiG~al~Ee~~yd~~G~llt~~~~dY~iPt~~DiP~~~~v~~~e~~~~~~~p~gaKgvGE~~~~~~~~v~ 1287 (1344)
T PLN00192 1208 LGQIEGAFVQGIGFFMLEEYTTNSDGLVVTDGTWTYKIPTVDTIPKQFNVEILNSGHHKKRVLSSKASGEPPLLLAASVH 1287 (1344)
T ss_pred HHHHHHHHHHHHhHHhceeEEECCCCCCCCCChhhcCCCcccccCCceEEEEEeCCCCCCCCCccccCccCcccccHHHH
Confidence 99999999999999999999999999999999999999999999955999999987668899999999999999999999
Q ss_pred HHHHHHHHHHHHhhhcccccCC----CCcccccCCCCCHHHHHHhcCCCchHHHHHHh
Q 002311 867 CATRAAIREARKQLLSWSQLDQ----SDLTFDLEVPATVQVVKELCGPDSVEKYLQWR 920 (937)
Q Consensus 867 ~Ai~nAi~~A~~~~~~~~~~~g----~~~~~~~~lP~Tpe~v~~a~~~~~~~~~~~~~ 920 (937)
+||.|||.+|+.++. +.| ....+..+.|+|||+|+.+|+.+....+..++
T Consensus 1288 ~Ai~~Ai~~Ar~~~~----~~g~~~~~~~~~~l~~pat~e~i~~~~~~~~~~~~~~~~ 1341 (1344)
T PLN00192 1288 CATRAAIREARKQLL----SWGGIDGSDSTFQLPVPATMPVVKELCGLDVVERYLEWK 1341 (1344)
T ss_pred HHHHHHHHHHHhhhc----ccCCcccCCCceecCCCCChHHHHHhcCChHHHHhhhhh
Confidence 999999999997520 012 34467889999999999999997555555554
No 3
>TIGR03313 Se_sel_red_Mo probable selenate reductase, molybdenum-binding subunit. Our comparative genomics suggests this protein family to be a subunit of a selenium-dependent molybdenum hydroxylase, although the substrate is not specified. This protein is suggested by Bebien, et al., to be the molybdenum-binding subunit of a molydbopterin-containing selenate reductase. Xi, et al, however, show that mutation of this gene in E. coli conferred sensitivity to adenine, suggesting a defect in purine interconversion. This finding, plus homology of nearby genes in a 23-gene purine catabolism region in E. coli to xanthine dehydrogase subunits suggests xanthine dehydrogenase activity.
Probab=100.00 E-value=6.1e-174 Score=1598.55 Aligned_cols=810 Identities=22% Similarity=0.315 Sum_probs=699.4
Q ss_pred EEECCEEEEEecCCCCCChHHHHhccCCCccCCC-ce---------EEEeCccccCC-----------------------
Q 002311 16 FAVNGEKFEVSSVDPSTTLLEFLRYHTRFKSVKL-GC---------VLVDAEKTHRP----------------------- 62 (937)
Q Consensus 16 ~~~Ng~~~~~~~~~p~~~Ll~~LR~~~~l~g~k~-gC---------vl~dg~~~~~~----------------------- 62 (937)
|+|||+++++ +++|+++|+++||+. +|||+|. || |||||+++++|
T Consensus 1 ~~~Ng~~~~~-~~~~~~~l~~~LR~~-~l~~~k~~~c~~g~CGaCtv~~dg~~v~sC~~~~~~~~g~~i~Tiegl~~~~~ 78 (951)
T TIGR03313 1 FTLNGAPQTL-ECKLGENVQTLLFNM-GMHSVRNSDDGFGFAGSDAILFNGVLKNASLLIAAQLEGAEVRTAESLGQWNQ 78 (951)
T ss_pred CEECCEEEEE-ecCCCCCHHHHHHHC-CCCCCcCCCCCcccCCCCEEEECCeEeeHHHHHHHHcCCCEEEecCcCCCCCC
Confidence 6899999999 799999999999996 9999999 67 99999999765
Q ss_pred -----------------CCCCCCC-----------CCCHHHHHHHHhCCcccCCCCHHHHHHHHHHhhhccccccccccc
Q 002311 63 -----------------EPPPGFS-----------KLTISEAEKAIAGNLCRCTGYRPIADACKSFAADVDIEDLGDRLC 114 (937)
Q Consensus 63 -----------------~~~pg~~-----------~p~~~ei~~~l~gnlCRCtgy~~i~~A~~~~~~~~~~~~~~~~~~ 114 (937)
.|||||+ +|+++||+++|+|||||||||.+|++||+.++.....
T Consensus 79 ~~~~q~af~~~~a~QCG~CtpG~~~~~~~ll~~~~~p~~~~i~~~l~gnlcrctgy~~i~~av~~~~~~~~~-------- 150 (951)
T TIGR03313 79 LSLVQQAMVDVGVVQSGYNDPAAALILTDLLDRNTQPNRAEIDDALSGLFSRDAGYQQFYQVIELAVKRLKD-------- 150 (951)
T ss_pred CCHHHHHHHHcCCCcCCCChHHHHHHHHHHHhcCCCCCHHHHHHHHhcceeccCCcHHHHHHHHHHHHhccc--------
Confidence 2688884 6899999999999999999999999999987653211
Q ss_pred CCCcchhhhhhhhhcccccccchhhhhccchhhhhhc--cccCCCCCCCCccCCcccccccccccccccCCCCCCcEEEE
Q 002311 115 GYSNSVLLKDSLMQQNHEQFDKSKVLTLLSSAEQVVR--LSREYFPVGEPIPKSGAALQASGEAIFVDDIPSPINCLYGA 192 (937)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~vG~~~~R~d~~~kvtG~a~Y~~Di~~~pgmL~a~ 192 (937)
+ .+ .+..+ .++++++||++++|+|+++||||+++|++|+. +|||||++
T Consensus 151 --------------~-~~--------------~~~~~~~~~~~~~~iGk~~~R~d~~~kvtG~a~Y~~D~~-~pgmL~a~ 200 (951)
T TIGR03313 151 --------------P-EH--------------KQSIAPEFRDDLTIIGKNCPKIDAAKMVQAKPCYVEDRV-PADACVIK 200 (951)
T ss_pred --------------c-cc--------------cccccCccccccccCCCCCcCcChHhhCccCccccccCC-CCCCEEEE
Confidence 0 00 00001 12467789999999999999999999999996 78999999
Q ss_pred EEecCCCCeEEEEEecCCcC-CCCEEEEEeccCCCcc-----CCCccCCCCCCCcccCCCCceeecCCcEEEEEeCCHHH
Q 002311 193 FVYSTKPLVRIRSVEIKSKS-LPGVSAFLSYKDIPEA-----GQNIGSRTKFGPEPLFADELTHCAGQPIAFVVADTQKI 266 (937)
Q Consensus 193 ~vrSp~ahArI~sID~s~A~-~pGVvaV~T~~Dip~~-----g~~~~~~~~~~~~p~la~~~Vry~G~pVA~VvAet~~~ 266 (937)
++|||++||||+|||+|+|+ ||||++|+|++|+|.. +...+ ....+.++|++++|||+|||||+|||+|+++
T Consensus 201 v~rSP~ahArI~sID~s~A~a~pGV~~Vvt~~D~p~~~~~~~~~~~~--~~~~~~~~l~~~~Vry~G~~vaaVvAet~~~ 278 (951)
T TIGR03313 201 MLRSPHPHAWITHLDVSKAEALPGVVHVITHLNCPDIYYTPGGQSAP--EPSPLDRRMFGQKMRHVGDRVAAVVAESEEI 278 (951)
T ss_pred EEecCCCcEEEEeeEHHHHHhCCCeEEEEeHHHCCccccCCCCccCC--CCCCCcccccCCeEEEcCCEEEEEEECCHHH
Confidence 99999999999999999999 9999999999999831 11110 0112344578999999999999999999999
Q ss_pred HHHhcccceEEEccCCCCCCcCCHHHHhcCCCC--ccc------------------------------------CCccc-
Q 002311 267 ANRAADLAVVDYDVGNLEPPILSVEEAVGRSSF--FEV------------------------------------PSFLY- 307 (937)
Q Consensus 267 A~~Aa~lI~Vey~~e~L~p~v~d~~~Al~~~a~--~~~------------------------------------~~~~~- 307 (937)
|++|+++|+||| |+| |+++|+++|++++++ |+. ++|+.
T Consensus 279 A~~A~~~I~Vey--e~L-p~v~d~~~Al~~~ap~ih~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Nv~~ 355 (951)
T TIGR03313 279 ALHALKLIEVEY--DVL-TPVMSIDEAMAAEAPIVHDEPIVYGAGAPDDLEEQNANADPRGEHMIINFPIGSRPRKNIAA 355 (951)
T ss_pred HHHHhcCCeeEE--EeC-CccCCHHHHhcCCCCeeccccccccccccccccccccccccccccccccccccccCCCceee
Confidence 999999999999 899 999999999999885 321 12331
Q ss_pred --ccccCChhhhcccCCeEEEEEEEEecccccCCccCCceEEEECCCCcEEEEeCCCChHHHHHHHHHHhCCCCCcEEEE
Q 002311 308 --PKSVGDISKGMNEADHKILSAEVKLGSQYYFYMETQTALAVPDEDNCLVVYSSIQCPEYAHATIARCLGIPEHNVRVI 385 (937)
Q Consensus 308 --~~~~Gd~e~af~~A~~vvve~~~~~~~~~h~~mEp~~avA~~~~dg~l~V~~stQ~p~~~r~~lA~~Lglp~~kVrV~ 385 (937)
....||++++|++|+++ ||++|++++++|++|||++|+|+||+ ++|+||+|||+||.+|..||++||||++||||+
T Consensus 356 ~~~~~~Gd~~~af~~A~~v-ve~~y~~~~~~H~~mEp~~aiA~~d~-~~l~V~~stQ~p~~~r~~vA~~Lglp~~kVrV~ 433 (951)
T TIGR03313 356 SVHGHIGDLNKGFAEADVI-IERTYESTQAQQCPTETHICFTYMDG-ERLVIHASTQVPWHVRRQVARIVGMKQHKVHVI 433 (951)
T ss_pred eccccCCCHHHHHhcCCEE-EEEEEEECCEeeecCCCceEEEEEcC-CeEEEEECCcCHHHHHHHHHHHHCCCHHHeEEE
Confidence 24779999999999996 99999999999999999999999985 589999999999999999999999999999999
Q ss_pred eccCCCCCCCCCcccchHHHHHHHHHHhCCCCEEEEcChhhhhhhcCCCCceEEEEEEEECCCCcEEEEEEEEEeeCCCC
Q 002311 386 TRRVGGGFGGKAIKAMPVATACALAAYKLCRPVRIYVNRKTDMVMAGGRHPMKIEYNVGFKSNGKITALQLNILIDAGQY 465 (937)
Q Consensus 386 ~~~vGGgFG~K~~~~~~~~~~aAlaA~~~gRPVk~~~~R~E~~~~~~~R~~~~~~~k~g~d~dG~i~A~~~~~~~d~Gay 465 (937)
.+++|||||+|... ..+..||++|+++||||||+|||+|+|+++.+||++.+++|+|+|+||+|+|++++++.|+|+|
T Consensus 434 ~~~vGGgFG~K~~~--~~e~~aA~aA~~~GrPVkl~~tReE~~~~~~~R~~~~~~~k~g~d~dG~I~A~~~~~~~d~Gay 511 (951)
T TIGR03313 434 KERVGGGFGSKQDI--LLEEVCAWATWVTGRPVYFRYTREEEFICNTSRHVAKVTVKLGAKKDGKLTAIDMDFRANTGPY 511 (951)
T ss_pred cCCCCcCcCCcccc--cHHHHHHHHHHHhCCCEEEEeeHHHHhhccCCCCCeEEEEEEEECCCCcEEEEEEEEEEcCccC
Confidence 99999999999853 2445678999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCchh-hhhhccCCCCccccEEEEEEEeecCCCCCCccCCCChhHHHHHHHHHHHHHHHHcCCCHHHHHHhhcCCCC
Q 002311 466 PDVSPNIP-AYMIGALKKYDWGALHFDIKVCRTNLPSRTAMRAPGEVQGSFIAEAVIEHVASTLSMEVDFVRSINLHTHN 544 (937)
Q Consensus 466 ~~~~~~~~-~~~~~~~~~Y~ipn~~~~~~~v~TN~~p~ga~RG~G~pq~~fa~E~~mD~lA~~lG~DP~e~R~kNl~~~~ 544 (937)
.+++..+. .......++|+|||++++.+.|+||++|.|+|||||.||+.|++|++||++|++|||||+|||+||+++++
T Consensus 512 ~~~~~~v~~~~~~~~~~~Y~ipn~~~~~~~v~TN~~p~ga~Rg~G~~q~~fa~Es~mDelA~~lG~DP~e~R~rN~~~~g 591 (951)
T TIGR03313 512 GNHSLTVPSNGPALSLPLYPCDNVDFRVTTYYSNICPTGAYQGYGAPKGNFALTMAMAELAEELGIDQLEMIETNRVHEG 591 (951)
T ss_pred cccchHHhhhhhhhcCcCccCCeEEEEEEEEECCCCCCCCcCCCCcccHHHHHHHHHHHHHHHhCcCHHHHHHHhCCCCC
Confidence 87665333 22334468899999999999999999999999999999999999999999999999999999999999887
Q ss_pred Cccccc------cCCCCcc-ccC-CHHHHHHHHHHhcCChhhHHHHHHHhhccCCcceeeeecceEeecCCC---CCceE
Q 002311 545 SLNLFY------ESSAGEL-EEY-TIPLIWDRLAVSSSFNQRTEVIKEFNRSNLWRKKGISRVPIVYDVPLM---STPGK 613 (937)
Q Consensus 545 ~~~~~~------~~~~g~~-~~~-~~~~~l~~~~~~~~~~~r~~~~~~~~~~~~~~~~Gig~a~~~~~~g~~---~~~a~ 613 (937)
+..... ..+.+.+ +++ ++.+||++++++++|.++++ ++++|+ +|+|+++..+..+.. ++.+.
T Consensus 592 d~~~~~~~~~~g~~~~~~~~~~s~~~~~~l~~~~~~~~w~~~~~------~~g~~~-~G~Gia~~~~~~g~~~~~~~~a~ 664 (951)
T TIGR03313 592 QELKILGAIGEGKMPTSVPKAASCALEEILRQGRELIEWDSPKQ------AKGDWK-IGRGVAIIMQKSGIPDIDQANCM 664 (951)
T ss_pred cccccccccccccccccccccCCCcHHHHHHHHHHhcCccchhh------hccCce-eeeEEEEEEecccCCCCCCccEE
Confidence 532100 0011222 333 89999999999999987542 234554 377776665544432 57899
Q ss_pred EEEccCCcEEEEeccccccccHHHHHHHHHHHHhcccccCCCCCCCCcEEEecCCCccccCCCCCcccchhhhhHHHHHH
Q 002311 614 VSILSDGSVVVEVGGIELGQGLWTKVKQMAAFALSSIQCGGMGDLLETVRVIQADTLSVIQGGLTAGSTKSEASCQAVRN 693 (937)
Q Consensus 614 v~l~~DG~v~v~~g~~e~GqG~~T~~aqiaAe~Lgi~~~~~~~~~~~~I~v~~~dT~~~p~~~~t~aSr~t~~~g~Av~~ 693 (937)
|+|++||+|+|++|++|||||++|+++||+||+||+ |+|+|+|..+||+.+|++++|+|||+|+++|+||++
T Consensus 665 v~l~~dG~v~v~~g~~e~GqG~~T~~~QiaAe~LGv--------p~d~V~v~~~DT~~~p~~~gt~aSr~t~~~G~Av~~ 736 (951)
T TIGR03313 665 IKLESDGTFIVHSGGADIGTGLDTVVSKLTAEVLHC--------PMDDVHVISGDTDHALFDKGAYASSGTCFSGNAAKR 736 (951)
T ss_pred EEEcCCceEEEEECCCCCCccHHHHHHHHHHHHHCC--------CHHhEEEEeCCCCCCCCCCCCcHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999 999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhc----------------cCccCHHHHHHHHHhc--CceeEEEEEecCCCCccccccEEEEEE
Q 002311 694 CCKILVERLTPLRERLQAQ----------------MGSVKWETLIQQAYLQ--SVSLSASSLYLPDFTSMKYLNYGAAVS 755 (937)
Q Consensus 694 Aa~~l~~~l~~~aa~~~~~----------------~~~~~~~~~~~~~~~~--~~~l~~~~~~~~~~~~~~~~~~ga~~a 755 (937)
||++||+||+.+++++++. ++.++|.+++..++.. ...+...+.|.++. .+|+|++|++
T Consensus 737 Aa~~l~~kl~~~aa~~l~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~a~~a 813 (951)
T TIGR03313 737 AAENLREKILFHGAEMLGEPVADVDLAAPGLVRGKTGEVSYFDIAHKAETGTGFGQLVGTGSYITSE---FAFPYGANFA 813 (951)
T ss_pred HHHHHHHHHHHHHHHHhCCCHHHEEEecCCEEeCCCCcccHHHHHHHHhccCCCCCeEEEEEecCCC---CCccceeEEE
Confidence 9999999999998876542 1236799987654321 22466777675432 2579999999
Q ss_pred EEEEECCCCcEEEEEEEEEecCCccCCccccchhhhchhHHHHHHHhccCceecCCCccccCCCCCCCCCCCCCCCCeeE
Q 002311 756 EVEINLLTGETTIVQSDIIYDCGQSLNPAVDLGQIEGSFVQGIGFFMLEEYPTNSDGLVVSEGTWTYKIPTLDTIPKQFN 835 (937)
Q Consensus 756 eVeVD~~TG~v~V~r~~~v~D~G~vINP~~v~gQi~Ggi~qGiG~AL~Ee~~~d~~G~~l~~~~~dY~iP~~~diP~~i~ 835 (937)
|||||++||+|||+|+++++|||++|||.+++||||||++||||+||+|++.||++|++++.||++|++|++.|+|.+|+
T Consensus 814 eVeVD~~TG~vkv~r~~~~~D~G~~INP~~v~gQieGg~~qGiG~AL~Ee~~~d~~G~~~~~~l~~Y~iPt~~D~P~~~~ 893 (951)
T TIGR03313 814 EVAVNTRTGEIRLDKFYALLDCGTPVNPELALGQIYGATMRAIGHSMTEEIVYDDNGIPLTRDLKSYGAPKIGDIPRDFR 893 (951)
T ss_pred EEEEECCCCcEEEEEEEEEEECCcccCHHHHHHHHHHHHHHHHHHHHhCCcEECCCCcCCCCChhhCCCCChHhCCCceE
Confidence 99999999999999999999999999999999999999999999999999999989999999999999999999993399
Q ss_pred EEEecCCCCCCCCCCccccCCCCccchhhHHHHHHHHHHHHHHhhhcccccCCCCcccccCCCCCHHHHHHhcC
Q 002311 836 VEILNSGHHKKRVLSSKASGEPPLLLAVSVHCATRAAIREARKQLLSWSQLDQSDLTFDLEVPATVQVVKELCG 909 (937)
Q Consensus 836 v~~~e~~~~p~gp~GaKGvGE~~~~~~~av~~Ai~nAi~~A~~~~~~~~~~~g~~~~~~~~lP~Tpe~v~~a~~ 909 (937)
+.++|++ +|.+|||+||+||+++++ +++||+|||+||+| ++++++|+|||+||++|+
T Consensus 894 v~~ve~~-~~~~p~GaKGiGE~~~~~---~apAIanAI~dA~G-------------~r~~~lP~tPe~vl~al~ 950 (951)
T TIGR03313 894 AVLVPSD-DKVGPYGAKSISEIGVNG---AAPAIATAIHDACG-------------VWLRDWHFTPEKILKGLN 950 (951)
T ss_pred EEEEcCC-CCCCCCCCcccCCCcccc---hHHHHHHHHHHHhC-------------cccccCCCCHHHHHHHhh
Confidence 9999875 688999999999999997 66799999999995 678999999999999875
No 4
>TIGR02969 mam_aldehyde_ox aldehyde oxidase. Members of this family are mammalian aldehyde oxidase (EC 1.2.3.1) isozymes, closely related to xanthine dehydrogenase/oxidase.
Probab=100.00 E-value=1.1e-172 Score=1634.45 Aligned_cols=719 Identities=35% Similarity=0.565 Sum_probs=649.8
Q ss_pred CCCCCCccCCcccccccccccccccCCCCCCcEEEEEEecCCCCeEEEEEecCCcC-CCCEEEEEeccCCCccCCCccCC
Q 002311 157 FPVGEPIPKSGAALQASGEAIFVDDIPSPINCLYGAFVYSTKPLVRIRSVEIKSKS-LPGVSAFLSYKDIPEAGQNIGSR 235 (937)
Q Consensus 157 ~~vG~~~~R~d~~~kvtG~a~Y~~Di~~~pgmL~a~~vrSp~ahArI~sID~s~A~-~pGVvaV~T~~Dip~~g~~~~~~ 235 (937)
.+||++++|+|+++||||+++|++|+..+|||||+++||||++||||++||+|+|+ ||||++|+|++|+| +.+.
T Consensus 574 ~~vGk~v~r~d~~~kvtG~a~Y~~Di~~~pgmL~a~~vrSp~ahArI~sID~s~A~~~pGV~~V~t~~Dvp--~~~~--- 648 (1330)
T TIGR02969 574 DPIGHPIMHLSGVKHATGEAIYCDDMPAVDQELFLTFVTSSRAHAKIVSIDLSEALSLPGVVDIITAEHLQ--DANT--- 648 (1330)
T ss_pred CcCCCCCcChhhHhhccccccccCCCCCCCCCEEEEEEecCCCceEEEeeeHHHHhcCCCeEEEEeHHHCC--CCCC---
Confidence 67999999999999999999999999635899999999999999999999999999 99999999999998 3221
Q ss_pred CCCCCcccCCCCceeecCCcEEEEEeCCHHHHHHhcccceEEEccCCCCCCcCCHHHHhcCCCCcccCCcccccccCChh
Q 002311 236 TKFGPEPLFADELTHCAGQPIAFVVADTQKIANRAADLAVVDYDVGNLEPPILSVEEAVGRSSFFEVPSFLYPKSVGDIS 315 (937)
Q Consensus 236 ~~~~~~p~la~~~Vry~G~pVA~VvAet~~~A~~Aa~lI~Vey~~e~L~p~v~d~~~Al~~~a~~~~~~~~~~~~~Gd~e 315 (937)
+.++|+|++++|||+|||||+|||+|+++|++|+++|+||| |+|+|+++|+++|+++++++... .....||++
T Consensus 649 --~~~~~~la~~~Vr~~Gqpva~VvAet~~~A~~Aa~~V~VeY--e~l~~~v~d~~~Al~~~a~~~~~---~~~~~Gdv~ 721 (1330)
T TIGR02969 649 --FGTEKLLATDKVHCVGQLVCAVIADSEVQAKQAAKHVKIVY--RDLEPLILTIEEAIQHKSFFEPE---RKLEYGNVD 721 (1330)
T ss_pred --CCCeeecCCCeEEEcCCeEEEEEECCHHHHHHHhcCCEEEE--ecCCCCcCCHHHHhcCCCEeccc---ccccCCchh
Confidence 24789999999999999999999999999999999999999 88856679999999988754321 135789999
Q ss_pred hhcccCCeEEEEEEEEecccccCCccCCceEEEECC-CCcEEEEeCCCChHHHHHHHHHHhCCCCCcEEEEeccCCCCCC
Q 002311 316 KGMNEADHKILSAEVKLGSQYYFYMETQTALAVPDE-DNCLVVYSSIQCPEYAHATIARCLGIPEHNVRVITRRVGGGFG 394 (937)
Q Consensus 316 ~af~~A~~vvve~~~~~~~~~h~~mEp~~avA~~~~-dg~l~V~~stQ~p~~~r~~lA~~Lglp~~kVrV~~~~vGGgFG 394 (937)
++|++|+++ ||++|++++|+|+||||++|+|+|++ +|+|+||+|||+|+.+|..||++||||++||||+.+++|||||
T Consensus 722 ~af~~a~~v-ve~~y~~~~~~H~~mEp~~~~A~~~~~~g~l~V~~stQ~p~~~r~~vA~~Lglp~~kVrV~~~~vGGgFG 800 (1330)
T TIGR02969 722 EAFKVVDQI-LEGEIHMGGQEHFYMETQSMLVVPKGEDQEMDVYVSTQFPKYIQDIVAATLKLPVNKVMCHVRRVGGAFG 800 (1330)
T ss_pred hhhccCCEE-EEEEEEECCEeecccCCCEEEEEEeCCCCeEEEEECCcCHHHHHHHHHHHhCCCHHHeEEEeCCcccCcc
Confidence 999999996 99999999999999999999999984 5789999999999999999999999999999999999999999
Q ss_pred CCCcccchHHHHHHHHHHhCCCCEEEEcChhhhhhhcCCCCceEEEEEEEECCCCcEEEEEEEEEeeCCCCCCCCC-chh
Q 002311 395 GKAIKAMPVATACALAAYKLCRPVRIYVNRKTDMVMAGGRHPMKIEYNVGFKSNGKITALQLNILIDAGQYPDVSP-NIP 473 (937)
Q Consensus 395 ~K~~~~~~~~~~aAlaA~~~gRPVk~~~~R~E~~~~~~~R~~~~~~~k~g~d~dG~i~A~~~~~~~d~Gay~~~~~-~~~ 473 (937)
+|.......++++|++|+++||||||+|||+|+|+++++||++.+++|+|+|+||+|+|++++++.|+|+|.+.+. ++.
T Consensus 801 ~K~~~~~~~~~~aA~aA~~~gRPVk~~~sR~e~~~~~~~R~~~~~~~k~g~~~dG~i~a~~~~~~~d~Ga~~~~~~~v~~ 880 (1330)
T TIGR02969 801 GKVGKTSIMAAITAFAANKHGRAVRCTLERGEDMLITGGRHPYLGKYKAGFMNDGRIVALDVEHYSNGGSSLDESLWVIE 880 (1330)
T ss_pred cccccccHHHHHHHHHHHHhCCCEEEEecHHHHhhhcCCcCceEEEEEEEECCCCCEEEEEEEEEEecccccCcchHHHH
Confidence 9987432346789999999999999999999999999999999999999999999999999999999999988775 445
Q ss_pred hhhhccCCCCccccEEEEEEEeecCCCCCCccCCCChhHHHHHHHHHHHHHHHHcCCCHHHHHHhhcCCCCCccccccCC
Q 002311 474 AYMIGALKKYDWGALHFDIKVCRTNLPSRTAMRAPGEVQGSFIAEAVIEHVASTLSMEVDFVRSINLHTHNSLNLFYESS 553 (937)
Q Consensus 474 ~~~~~~~~~Y~ipn~~~~~~~v~TN~~p~ga~RG~G~pq~~fa~E~~mD~lA~~lG~DP~e~R~kNl~~~~~~~~~~~~~ 553 (937)
....+..++|+|||++++++.|+||+||.|+|||||.||++|++|++||++|++|||||+|||+||++++++. +||
T Consensus 881 ~~~~~~~~~Y~ipn~~~~~~~v~TN~~~~~a~RG~G~~q~~fa~E~~mD~lA~~lg~DP~e~R~~N~~~~gd~-~p~--- 956 (1330)
T TIGR02969 881 MGLLKMDNAYKFPNLRCRGWACRTNLPSNTAFRGFGFPQAGLITEACITEVAAKCGLSPEKVRTINMYKEIDQ-TPY--- 956 (1330)
T ss_pred HHHHhcCCCccCCcEEEEEEEEECCCCCCCccCCCchHHHHHHHHHHHHHHHHHHCcCHHHHHHHhCCCCccc-CCC---
Confidence 5556778999999999999999999999999999999999999999999999999999999999999987654 233
Q ss_pred CCccccC-CHHHHHHHHHHhcCChhhHHHHHHHhhccCCcceeeeecceEeecCCC-----CCceEEEEccCCcEEEEec
Q 002311 554 AGELEEY-TIPLIWDRLAVSSSFNQRTEVIKEFNRSNLWRKKGISRVPIVYDVPLM-----STPGKVSILSDGSVVVEVG 627 (937)
Q Consensus 554 ~g~~~~~-~~~~~l~~~~~~~~~~~r~~~~~~~~~~~~~~~~Gig~a~~~~~~g~~-----~~~a~v~l~~DG~v~v~~g 627 (937)
|+++++ ++++||+++++.++|++|++.+..+++.++|++||+|+++..++++++ ++.+.|+|++||+|+|.+|
T Consensus 957 -~~~~~~~~~~~~l~~~~~~~~~~~r~~~~~~~~~~~~~~~rGiG~a~~~~~~~~~~~~~~~~~a~v~i~~DGsV~V~~G 1035 (1330)
T TIGR02969 957 -KQEINAKNLFQCWRECMAKSSYSERKVAVEKFNAENYWKKRGLAVIPLKFPVGLGSVAMGQAAALVHIYLDGSVLVTHG 1035 (1330)
T ss_pred -CcccCCCcHHHHHHHHHHhcCHHHHHHHHHHHhccCCCeEEEEEEEEEEeccccccCCCCCccEEEEEcCCceEEEEEC
Confidence 455554 999999999999999998877777777788999999999999887653 4789999999999999999
Q ss_pred cccccccHHHHHHHHHHHHhcccccCCCCCCCCcEEEecCCCccccCCCCCcccchhhhhHHHHHHHHHHHHHHHHHHHH
Q 002311 628 GIELGQGLWTKVKQMAAFALSSIQCGGMGDLLETVRVIQADTLSVIQGGLTAGSTKSEASCQAVRNCCKILVERLTPLRE 707 (937)
Q Consensus 628 ~~e~GqG~~T~~aqiaAe~Lgi~~~~~~~~~~~~I~v~~~dT~~~p~~~~t~aSr~t~~~g~Av~~Aa~~l~~~l~~~aa 707 (937)
++|||||++|+++|||||+||| |+|+|+|..+||+.+|++++|+|||+|+++|+||++||++||+||+++++
T Consensus 1036 ~~e~GQG~~T~~aQiaAe~LGi--------p~e~V~v~~~DT~~~p~~~gt~gSr~t~~~G~Av~~A~~~l~~rl~~~aa 1107 (1330)
T TIGR02969 1036 GIEMGQGVHTKMIQVVSRELKM--------PMSNVHLRGTSTETVPNTNASGGSVVADLNGLAVKDACQTLLKRLEPIIS 1107 (1330)
T ss_pred CcCcCCChHHHHHHHHHHHhCC--------CHHHEEEEcCCCCCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999 99999999999999999999999999999999999999999999999987
Q ss_pred HHHhccCccCHHHHHHHHHhcCceeEEEEEecCCC----------CccccccEEEEEEEEEEECCCCcEEEEEEEEEecC
Q 002311 708 RLQAQMGSVKWETLIQQAYLQSVSLSASSLYLPDF----------TSMKYLNYGAAVSEVEINLLTGETTIVQSDIIYDC 777 (937)
Q Consensus 708 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~----------~~~~~~~~ga~~aeVeVD~~TG~v~V~r~~~v~D~ 777 (937)
.. ...+|.+++..++...+.|.+.++|.... .++.+|+||+|++|||||++||+++|+|+++++||
T Consensus 1108 ~~----~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ga~~aeVEVD~~TG~v~vlr~~~v~D~ 1183 (1330)
T TIGR02969 1108 KN----PQGTWKDWAQTAFDQSISLSAVGYFRGYESNINWEKGEGHPFEYFVYGAACSEVEIDCLTGDHKNIRTDIVMDV 1183 (1330)
T ss_pred hC----CCCCHHHHHHhhccCCCceEEEEEecCCcccccccCcCCCCccccceeeEEEEEEEecCCCCEEEEEEEEEEeC
Confidence 42 24679988754544456677777664211 23447899999999999999999999999999999
Q ss_pred CccCCccccchhhhchhHHHHHHHhccCceecCCCccccCCCCCCCCCCCCCCCCeeEEEEecCCCCCCCCCCccccCCC
Q 002311 778 GQSLNPAVDLGQIEGSFVQGIGFFMLEEYPTNSDGLVVSEGTWTYKIPTLDTIPKQFNVEILNSGHHKKRVLSSKASGEP 857 (937)
Q Consensus 778 G~vINP~~v~gQi~Ggi~qGiG~AL~Ee~~~d~~G~~l~~~~~dY~iP~~~diP~~i~v~~~e~~~~p~gp~GaKGvGE~ 857 (937)
|++|||.+++||||||++||||++|+||+.||++|+++|+||+||+||++.|+|.+|++.+++++++|.+|||+||+||+
T Consensus 1184 G~~INP~~~~GQieGg~vqGiG~al~Ee~~yd~~G~~lt~~~~dY~iPt~~DiP~~~~v~~~~~~~~~~~p~GaKGvGE~ 1263 (1330)
T TIGR02969 1184 GHSINPALDIGQVEGAFIQGMGLYTIEELSYSPQGILYSRGPNQYKIPAICDIPTELHISFLPPSEHSNTLYSSKGLGES 1263 (1330)
T ss_pred CcccCHHHHhHhHHHHHHHHHHHHHcceeEECCCCCCCCCCcccccCCchhhcCCCEEEEEEeCCCCCCCCCccccCccc
Confidence 99999999999999999999999999999999999999999999999999999944999999866678999999999999
Q ss_pred CccchhhHHHHHHHHHHHHHHhhhcccccCCCCcccccCCCCCHHHHHHhcCCCc
Q 002311 858 PLLLAVSVHCATRAAIREARKQLLSWSQLDQSDLTFDLEVPATVQVVKELCGPDS 912 (937)
Q Consensus 858 ~~~~~~av~~Ai~nAi~~A~~~~~~~~~~~g~~~~~~~~lP~Tpe~v~~a~~~~~ 912 (937)
++++++++++||+|||++|++.. |..+++++++|+||||||++|..+.
T Consensus 1264 ~~~~a~~v~~AI~nAI~~A~g~~-------g~~~~~~~~~P~Tperv~~al~~~~ 1311 (1330)
T TIGR02969 1264 GVFLGCSVFFAIHDAVRAARQER-------GLSGPWKLTSPLTPEKIRMACEDKF 1311 (1330)
T ss_pred ccccCccHHHHHHHHHHHHHhhc-------CCCcCccCCCCCCHHHHHHHhhhhH
Confidence 99987789999999999999743 3333568999999999999998863
No 5
>PLN02906 xanthine dehydrogenase
Probab=100.00 E-value=3.4e-170 Score=1613.34 Aligned_cols=735 Identities=38% Similarity=0.601 Sum_probs=669.1
Q ss_pred cchhhhhhccccCCCCCCCCccCCcccccccccccccccCCCCCCcEEEEEEecCCCCeEEEEEecCCcC-CCCEEEEEe
Q 002311 143 LSSAEQVVRLSREYFPVGEPIPKSGAALQASGEAIFVDDIPSPINCLYGAFVYSTKPLVRIRSVEIKSKS-LPGVSAFLS 221 (937)
Q Consensus 143 ~~~~~~~~~~~~~~~~vG~~~~R~d~~~kvtG~a~Y~~Di~~~pgmL~a~~vrSp~ahArI~sID~s~A~-~pGVvaV~T 221 (937)
+|++.|.|+.+++++.||++++|+|+..||||+++|++|+..+|||||+++||||++||+|++||+|+|+ ||||++|+|
T Consensus 549 ~~~~~q~~~~~~~~~~vGk~~~r~d~~~kvtG~a~Y~~Di~~~~g~L~a~~vrSp~aharI~sID~s~A~~~pGV~~v~t 628 (1319)
T PLN02906 549 SSVGMQDYETVKQGTAVGQPEVHLSAELQVTGEAEYADDIPMPPNTLHAALVLSTKPHARILSIDDSEAKSSPGFAGIFL 628 (1319)
T ss_pred CCccceecccccccccCCCCccCcchhhhcceeEEeccCCcCCCCCEEEEEEecCcCceEEeecchHHHhCCCCeEEEEc
Confidence 3456666776678899999999999999999999999999745899999999999999999999999999 999999999
Q ss_pred ccCCCccCCC-ccCCCCCCCcccCCCCceeecCCcEEEEEeCCHHHHHHhcccceEEEccCCCCCCcCCHHHHhcCCCCc
Q 002311 222 YKDIPEAGQN-IGSRTKFGPEPLFADELTHCAGQPIAFVVADTQKIANRAADLAVVDYDVGNLEPPILSVEEAVGRSSFF 300 (937)
Q Consensus 222 ~~Dip~~g~~-~~~~~~~~~~p~la~~~Vry~G~pVA~VvAet~~~A~~Aa~lI~Vey~~e~L~p~v~d~~~Al~~~a~~ 300 (937)
++|+| +.| .+. ...++|+|++++|||+|||||+|||+|+++|++|+++|+|+| |+| |+++|+++|++++++|
T Consensus 629 ~~Dip--~~~~~g~--~~~~~~~la~~~V~y~GqpVa~VvA~t~~~A~~Aa~~V~Vey--e~l-p~v~~~~~Al~~~a~~ 701 (1319)
T PLN02906 629 AKDVP--GDNMIGP--VVHDEELFATDVVTCVGQVIGVVVADTQENAKAAARKVKVEY--EEL-PAILSIEEAIEAGSFH 701 (1319)
T ss_pred hhhCC--CCCCCCC--CCCCeeEecCcEEEEcCCeEEEEEECCHHHHHHHhCCCEEEE--ecC-CccCCHHHHhcCCCcc
Confidence 99998 322 221 235889999999999999999999999999999999999999 889 8999999999998876
Q ss_pred ccCCcccccccCChhhhccc--CCeEEEEEEEEecccccCCccCCceEEEECCC-CcEEEEeCCCChHHHHHHHHHHhCC
Q 002311 301 EVPSFLYPKSVGDISKGMNE--ADHKILSAEVKLGSQYYFYMETQTALAVPDED-NCLVVYSSIQCPEYAHATIARCLGI 377 (937)
Q Consensus 301 ~~~~~~~~~~~Gd~e~af~~--A~~vvve~~~~~~~~~h~~mEp~~avA~~~~d-g~l~V~~stQ~p~~~r~~lA~~Lgl 377 (937)
+... .....||++++|++ |+++ ||++|++++|+|+||||++|+|+|+++ |+|+||+|||+|+.+|..||++|||
T Consensus 702 ~~~~--~~~~~Gdv~~af~~a~a~~v-ve~~~~~~~~~H~~mEp~~~~A~~~~~~g~l~v~~sTQ~p~~~r~~vA~~Lgi 778 (1319)
T PLN02906 702 PNTE--RRLEKGDVELCFASGQCDRI-IEGEVQMGGQEHFYLEPNSSLVWTSDSGNEVHMISSTQAPQKHQKYVAHVLGL 778 (1319)
T ss_pred cCCC--ceeecCCHHHHhhccCCceE-EEEEEEECCccccccCCCeEEEEEeCCCCEEEEEECCcCHHHHHHHHHHHhCC
Confidence 4221 23578999999999 6986 999999999999999999999999877 6899999999999999999999999
Q ss_pred CCCcEEEEeccCCCCCCCCCcccchHHHHHHHHHHhCCCCEEEEcChhhhhhhcCCCCceEEEEEEEECCCCcEEEEEEE
Q 002311 378 PEHNVRVITRRVGGGFGGKAIKAMPVATACALAAYKLCRPVRIYVNRKTDMVMAGGRHPMKIEYNVGFKSNGKITALQLN 457 (937)
Q Consensus 378 p~~kVrV~~~~vGGgFG~K~~~~~~~~~~aAlaA~~~gRPVk~~~~R~E~~~~~~~R~~~~~~~k~g~d~dG~i~A~~~~ 457 (937)
|++||||+.+++|||||+|.+....+++++|++|+++||||||+|||+|+|+++++||++.+++|+|+|+||+|+|++++
T Consensus 779 p~~kVrV~~~~vGGgFGgK~~~~~~~~~~aAlaA~~~gRPVkl~~sReE~~~~~~~R~~~~~~~k~g~~~dG~I~a~~~~ 858 (1319)
T PLN02906 779 PMSKVVCKTKRIGGGFGGKETRSAFIAAAAAVPAYLLNRPVKLTLDRDVDMMITGQRHAFLGKYKVGFTNEGKILALDLE 858 (1319)
T ss_pred ChHHeEEEeCCcccCccccccccchHHHHHHHHHHHhCCCEEEEecHHHHhhhcCCccceEEEEEEEECCCCCEEEEEEE
Confidence 99999999999999999998755556788899999999999999999999999999999999999999999999999999
Q ss_pred EEeeCCCCCCCCC-chhhhhhccCCCCccccEEEEEEEeecCCCCCCccCCCChhHHHHHHHHHHHHHHHHcCCCHHHHH
Q 002311 458 ILIDAGQYPDVSP-NIPAYMIGALKKYDWGALHFDIKVCRTNLPSRTAMRAPGEVQGSFIAEAVIEHVASTLSMEVDFVR 536 (937)
Q Consensus 458 ~~~d~Gay~~~~~-~~~~~~~~~~~~Y~ipn~~~~~~~v~TN~~p~ga~RG~G~pq~~fa~E~~mD~lA~~lG~DP~e~R 536 (937)
++.|+|+|.+++. ++...+.+..++|+|||++++++.|+||++|+|+|||||.||++|++|++||++|++|||||+|||
T Consensus 859 ~~~d~Ga~~~~~~~v~~~~~~~~~~~Y~ipn~~~~~~~v~TN~~~~ga~RG~G~pq~~fa~E~~mD~lA~~lG~DP~e~R 938 (1319)
T PLN02906 859 IYNNGGNSLDLSGAVLERAMFHSDNVYEIPNVRIVGNVCFTNFPSNTAFRGFGGPQGMLITENWIQRIAVELNKSPEEIR 938 (1319)
T ss_pred EEecCcccCCcchHHHHHHHHhcCCCccCcceEEEEEEEECCCCCCCcccCCCHHHHHHHHHHHHHHHHHHhCcCHHHHH
Confidence 9999999998775 445556677899999999999999999999999999999999999999999999999999999999
Q ss_pred HhhcCCCCCccccccCCCCccccC-CHHHHHHHHHHhcCChhhHHHHHHHhhccCCcceeeeecceEeecCCC-----CC
Q 002311 537 SINLHTHNSLNLFYESSAGELEEY-TIPLIWDRLAVSSSFNQRTEVIKEFNRSNLWRKKGISRVPIVYDVPLM-----ST 610 (937)
Q Consensus 537 ~kNl~~~~~~~~~~~~~~g~~~~~-~~~~~l~~~~~~~~~~~r~~~~~~~~~~~~~~~~Gig~a~~~~~~g~~-----~~ 610 (937)
+||++++++. +++|+.+++ .+++||+++++.++|++|++.+.+||+.++|++||+|+++..++.++. ++
T Consensus 939 ~~Nl~~~g~~-----~~~g~~~~~~~~~~~l~~~~~~~~~~~r~~~~~~~~~~~~~~krGiG~a~~~~g~~~~~~~~~~~ 1013 (1319)
T PLN02906 939 EMNFQGEGSV-----THYGQVLQHCTLPQLWDELKVSCDFLKRREEVDEFNAKNRWKKRGVAMVPTKFGISFTTKFMNQA 1013 (1319)
T ss_pred HHhCCCCCCC-----CcCCccccCCCHHHHHHHHHHhCCHHHHHHHHHHHhhcCCCceEEEEEEecccccccccccCCcc
Confidence 9999987653 356777766 999999999999999988887788888889999999999888877643 57
Q ss_pred ceEEEEccCCcEEEEeccccccccHHHHHHHHHHHHhcccccCCCCCCCCcEEEecCCCccccCCCCCcccchhhhhHHH
Q 002311 611 PGKVSILSDGSVVVEVGGIELGQGLWTKVKQMAAFALSSIQCGGMGDLLETVRVIQADTLSVIQGGLTAGSTKSEASCQA 690 (937)
Q Consensus 611 ~a~v~l~~DG~v~v~~g~~e~GqG~~T~~aqiaAe~Lgi~~~~~~~~~~~~I~v~~~dT~~~p~~~~t~aSr~t~~~g~A 690 (937)
.+.|+|++||+|+|++|++|||||++|+++|||||+||| |+|+|+|..+||+.+|++++|+|||+|+++|+|
T Consensus 1014 ~a~V~i~~DGsV~V~~G~~e~GQG~~T~~aQiaAe~LGi--------p~d~V~v~~~DT~~~p~~~gT~aSr~t~~~G~A 1085 (1319)
T PLN02906 1014 GALVHVYTDGTVLVTHGGVEMGQGLHTKVAQVAASAFNI--------PLSSVFISETSTDKVPNASPTAASASSDMYGAA 1085 (1319)
T ss_pred ceEEEEcCCceEEEEECCccCCCChHHHHHHHHHHHHCC--------CHHHEEEEccCCCCCCCCCCCccchhhHhHHHH
Confidence 899999999999999999999999999999999999999 999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhccCccCHHHHHHHHHhcCceeEEEEEecCCC----------CccccccEEEEEEEEEEE
Q 002311 691 VRNCCKILVERLTPLRERLQAQMGSVKWETLIQQAYLQSVSLSASSLYLPDF----------TSMKYLNYGAAVSEVEIN 760 (937)
Q Consensus 691 v~~Aa~~l~~~l~~~aa~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~----------~~~~~~~~ga~~aeVeVD 760 (937)
|++||++||+||+++++.+ ..++|.+++..++..+..|.++++|.+.. .++.+|+||+|++|||||
T Consensus 1086 v~~Aa~~l~~rl~~~a~~~----~~~~~~~l~~~~~~~~~~l~a~~~~~~~~~~~~~~~~~~~~~~~~~~ga~~~eVeVD 1161 (1319)
T PLN02906 1086 VLDACEQIKARMEPVASKL----NFSSFAELVTACYFQRIDLSAHGFYITPDIGFDWKTGKGNPFNYFTYGAAFAEVEID 1161 (1319)
T ss_pred HHHHHHHHHHHHHHHHHHc----CCCCHHHHHHHhhccCCCeEEEEEecCCCcccccccccCCCccceeeeEEEEEEEEe
Confidence 9999999999999997655 35889999987765556788888886532 234578999999999999
Q ss_pred CCCCcEEEEEEEEEecCCccCCccccchhhhchhHHHHHHHhccCceecCC-------CccccCCCCCCCCCCCCCCCCe
Q 002311 761 LLTGETTIVQSDIIYDCGQSLNPAVDLGQIEGSFVQGIGFFMLEEYPTNSD-------GLVVSEGTWTYKIPTLDTIPKQ 833 (937)
Q Consensus 761 ~~TG~v~V~r~~~v~D~G~vINP~~v~gQi~Ggi~qGiG~AL~Ee~~~d~~-------G~~l~~~~~dY~iP~~~diP~~ 833 (937)
++||+++|+|+++++|||++|||.+++||||||++||||++|+||+.||++ |+++|++|++|+||++.|+|.+
T Consensus 1162 ~~TG~v~vlr~~~v~D~G~~iNP~~~~GQieGg~vqGiG~aL~Ee~~~d~~~~~~~~~G~llt~~~~~Y~iPt~~DiP~~ 1241 (1319)
T PLN02906 1162 TLTGDFHTRRVDIVMDLGYSINPAIDIGQIEGAFVQGLGWVALEELKWGDAAHKWIRPGSLFTCGPGTYKIPSVNDIPFK 1241 (1319)
T ss_pred cCCCcEEEEEEEEEEecCccCCHHHHhHhhHHHHHHHHHHHhcCceEEcccccccCCCCccccCCCcccCCCCccccCCc
Confidence 999999999999999999999999999999999999999999999999976 9999999999999999999954
Q ss_pred eEEEEecCCCCCCCCCCccccCCCCccchhhHHHHHHHHHHHHHHhhhcccccCCCCcccccCCCCCHHHHHHhcCCC
Q 002311 834 FNVEILNSGHHKKRVLSSKASGEPPLLLAVSVHCATRAAIREARKQLLSWSQLDQSDLTFDLEVPATVQVVKELCGPD 911 (937)
Q Consensus 834 i~v~~~e~~~~p~gp~GaKGvGE~~~~~~~av~~Ai~nAi~~A~~~~~~~~~~~g~~~~~~~~lP~Tpe~v~~a~~~~ 911 (937)
|++.+++..++|.+|||+||+||+++++++++++||+|||++|++.. |..+++++++|+||||||++|..+
T Consensus 1242 ~~v~~~~~~~~~~~p~gaKGvGE~~~~~~aav~~AI~~Ai~~A~~~~-------g~~~~~~~~~P~Tperi~~a~~~~ 1312 (1319)
T PLN02906 1242 FNVSLLKGAPNPKAIHSSKAVGEPPFFLAASVFFAIKDAIKAARAEV-------GLHGWFPLDTPATPERIRMACGDE 1312 (1319)
T ss_pred eEEEEEeCCCCCCCCCcCccCCccccccchHHHHHHHHHHHHHHhhc-------CCCCcccCCCCCCHHHHHHHccch
Confidence 99999963357899999999999999998889999999999999753 444568899999999999999886
No 6
>TIGR03311 Se_dep_Molyb_1 selenium-dependent molybdenum hydroxylase 1. Members of this protein family show full length homology to the molybdenum-containing aldehyde oxido-reductase of Desulfovibrio gigas. Members, however, are found only within species that have, and near those genes that encode, a set of predicted accessory proteins for selenium-dependent molybdenum hydroxylases. The best known examples of such enzymes are forms of xanthine dehydrogenase and purine hydroxylase; this family appears to be another such enzyme.
Probab=100.00 E-value=2.4e-167 Score=1531.88 Aligned_cols=772 Identities=26% Similarity=0.369 Sum_probs=656.6
Q ss_pred EEEEECCEEEEEecCCCCCChHHHHhccCCCccCCCce---------EEEeCccccCC----------------------
Q 002311 14 VVFAVNGEKFEVSSVDPSTTLLEFLRYHTRFKSVKLGC---------VLVDAEKTHRP---------------------- 62 (937)
Q Consensus 14 i~~~~Ng~~~~~~~~~p~~~Ll~~LR~~~~l~g~k~gC---------vl~dg~~~~~~---------------------- 62 (937)
++|+|||+. + +++|+++||++||++++|||+|.|| |||||+++++|
T Consensus 1 ~~~~~ng~~--~-~~~~~~~l~~~lr~~~~~~~~k~gc~~g~cgactv~~dg~~~~sc~~~~~~~~g~~i~T~egl~~~~ 77 (848)
T TIGR03311 1 YEFIVNGRE--V-DVNEEKKLLEFLREDLRLTGVKNGCGEGACGACTVIVNGKAVRACRFTTAKLAGKEITTVEGLTERE 77 (848)
T ss_pred CEEEECCEE--e-eCCCCCcHHHHHHHhcCCCcCCCCCCCCCCCCcEEEECCeEEehhhhhHHhcCCCEEEecCCCCCCC
Confidence 379999974 4 4679999999999999999999999 99999999765
Q ss_pred -----------------CCCCCCC-----------CCCHHHHHHHHhCCcccCCCCHHHHHHHHHHhhhccccccccccc
Q 002311 63 -----------------EPPPGFS-----------KLTISEAEKAIAGNLCRCTGYRPIADACKSFAADVDIEDLGDRLC 114 (937)
Q Consensus 63 -----------------~~~pg~~-----------~p~~~ei~~~l~gnlCRCtgy~~i~~A~~~~~~~~~~~~~~~~~~ 114 (937)
.|||||+ +|+++||+++|+|||||||||++|++|++.++..++. .
T Consensus 78 ~~~~q~a~~~~~~~qcG~ctpg~~~~~~~ll~~~~~p~~~~i~~~l~gnlcrctgy~~i~~a~~~~~~~~~~----~--- 150 (848)
T TIGR03311 78 KDVYAWAFAKAGAVQCGFCIPGMVISAKALLDKNPNPTEAEIKKALKGNICRCTGYVKIIKAVRLAAKAFRE----E--- 150 (848)
T ss_pred CCHHHHHHHHcCCCcCCCCchhHHHHHHHHHhcCCCCCHHHHHHHHhcCccccCChHHHHHHHHHHHHhhcc----c---
Confidence 2789985 6899999999999999999999999999987654321 0
Q ss_pred CCCcchhhhhhhhhcccccccchhhhhccchhhhhhccccCCCCCCCCccCCcccccccccccccccCCCCCCcEEEEEE
Q 002311 115 GYSNSVLLKDSLMQQNHEQFDKSKVLTLLSSAEQVVRLSREYFPVGEPIPKSGAALQASGEAIFVDDIPSPINCLYGAFV 194 (937)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~~~~R~d~~~kvtG~a~Y~~Di~~~pgmL~a~~v 194 (937)
. + .+. . +....||++++|+|+.+||||+++|++|+. +|||||++++
T Consensus 151 ------------------~---~---~~~------~---~~~~~iG~~~~R~d~~~kvtG~~~Y~~Di~-~pgmL~a~~v 196 (848)
T TIGR03311 151 ------------------I---E---PPR------G---EPKGKLGENFPRVDAVPKVLGEGVYVDDMQ-IEGMLYGSAL 196 (848)
T ss_pred ------------------c---c---ccc------c---cccCCCCCccCCcChhhhCcccccccccCC-CCCCEEEEEE
Confidence 0 0 000 0 012369999999999999999999999997 7899999999
Q ss_pred ecCCCCeEEEEEecCCcC-CCCEEEEEeccCCCccCCCccCCCCCCCccc-CC-CCceeecCCcEEEEEeCCHHHHHHhc
Q 002311 195 YSTKPLVRIRSVEIKSKS-LPGVSAFLSYKDIPEAGQNIGSRTKFGPEPL-FA-DELTHCAGQPIAFVVADTQKIANRAA 271 (937)
Q Consensus 195 rSp~ahArI~sID~s~A~-~pGVvaV~T~~Dip~~g~~~~~~~~~~~~p~-la-~~~Vry~G~pVA~VvAet~~~A~~Aa 271 (937)
|||++||+|++||+|+|+ ||||++|+|++|+|. ..+.+. ...++|. ++ +++|||+|||||+|+|+|+++|++|+
T Consensus 197 rSp~ahA~I~~ID~s~A~a~PGV~aVvt~~Dip~-~~~~g~--~~~~~~~~~a~~~~Vry~Ge~VA~VvA~t~~~A~~A~ 273 (848)
T TIGR03311 197 RSKYPRALVKSIDITVALKHPGVVAVLTAKDIPG-NRKIGH--IFKDWPALIAVGEITRYVGDAVALVAAKSKEALREAL 273 (848)
T ss_pred eCCCCCEEEEeeEHHHHHhCCCcEEEEeHHHCCC-ccCCCC--CCCCccccccCCCEEEEcCCeEEEEEECCHHHHHHHh
Confidence 999999999999999999 999999999999983 112221 2234443 33 68999999999999999999999999
Q ss_pred ccceEEEccCCCCCCcCCHHHHhcCCCC--cccCCccc---ccccCChhhhcccCCeEEEEEEEEecccccCCccCCceE
Q 002311 272 DLAVVDYDVGNLEPPILSVEEAVGRSSF--FEVPSFLY---PKSVGDISKGMNEADHKILSAEVKLGSQYYFYMETQTAL 346 (937)
Q Consensus 272 ~lI~Vey~~e~L~p~v~d~~~Al~~~a~--~~~~~~~~---~~~~Gd~e~af~~A~~vvve~~~~~~~~~h~~mEp~~av 346 (937)
++|+||| |+| |+++|+++|++++++ |+ ++|+. ....||++++|++|+++ ||++|++++|+|+||||++++
T Consensus 274 ~~V~Vey--e~l-p~v~d~~~A~~~~a~~i~~-~~Nv~~~~~~~~Gdv~~af~~A~~v-ve~~y~~~~~~h~~mEp~~~v 348 (848)
T TIGR03311 274 NLIKVDY--EEL-PPLTSPEEALAEGAPAIHP-KGNILSEEHVVRGDAEEALENSAYV-VTNHYSTPFTEHAFLEPESAL 348 (848)
T ss_pred CCCcEEE--ecC-CCcCCHHHHhcCCCCeECC-CCCCcceeeecCCCHHHHhhcCCeE-EEEEEEECCEeeeecCCceEE
Confidence 9999999 899 999999999999874 43 34552 35789999999999996 999999999999999999999
Q ss_pred EEECCCCcEEEEeCCCChHHHHHHHHHHhCCCCCcEEEEeccCCCCCCCCCcccchHHHHHHHHHHhCCCCEEEEcChhh
Q 002311 347 AVPDEDNCLVVYSSIQCPEYAHATIARCLGIPEHNVRVITRRVGGGFGGKAIKAMPVATACALAAYKLCRPVRIYVNRKT 426 (937)
Q Consensus 347 A~~~~dg~l~V~~stQ~p~~~r~~lA~~Lglp~~kVrV~~~~vGGgFG~K~~~~~~~~~~aAlaA~~~gRPVk~~~~R~E 426 (937)
|+|++ ++|+||+|||+||.+|..||++||||++||||+.+++|||||+|... + .+..+|++|+++||||||+|||+|
T Consensus 349 A~~~~-~~l~v~~stQ~p~~~r~~vA~~Lglp~~~VrV~~~~vGGgFG~K~~~-~-~~~~aA~~A~~~gRPVkl~~sR~E 425 (848)
T TIGR03311 349 AVPEG-DGVIIYTSTQGVYDEQRELASLLGLPKEKIRVINKFVGGGFGGKEDM-S-VQHHAALLAWATKRPVKVTLTRKE 425 (848)
T ss_pred EEEeC-CeEEEEECCcCHHHHHHHHHHHhCCChHHEEEEeCCCCCcCCccccc-c-HHHHHHHHHHHhCCCEEEEechHH
Confidence 99984 56999999999999999999999999999999999999999999864 3 345788999999999999999999
Q ss_pred hhhhcCCCCceEEEEEEEECCCCcEEEEEEEEEeeCCCCCCCCC-chhhhhhccCCCCccccEEEEEEEeecCCCCCCcc
Q 002311 427 DMVMAGGRHPMKIEYNVGFKSNGKITALQLNILIDAGQYPDVSP-NIPAYMIGALKKYDWGALHFDIKVCRTNLPSRTAM 505 (937)
Q Consensus 427 ~~~~~~~R~~~~~~~k~g~d~dG~i~A~~~~~~~d~Gay~~~~~-~~~~~~~~~~~~Y~ipn~~~~~~~v~TN~~p~ga~ 505 (937)
+|+++.+||++.+++|+|+|+||+|+|++++++.|+|+|.+++. ++......+.++|+|||++++++.|+||++|+|+|
T Consensus 426 ~~~~~~~R~~~~~~~k~g~d~dG~i~a~~~~~~~d~Gay~~~~~~v~~~~~~~~~~~Y~ipn~~~~~~~v~TN~~p~ga~ 505 (848)
T TIGR03311 426 SILVHPKRHAMEMTFTTGCDEAGNLTAMKADIIADTGAYASLGGPVLQRACTHAAGPYKYPNVDIRGTAVYTNNPPAGAF 505 (848)
T ss_pred hhhccCCCCceEEEEEEEECCCCcEEEEEEEEEEccccCCCccHHHHHHHHHhcCCCccCceEEEEEEEEECCCCCCCCc
Confidence 99999999999999999999999999999999999999998765 44445567789999999999999999999999999
Q ss_pred CCCChhHHHHHHHHHHHHHHHHcCCCHHHHHHhhcCCCCCccccccCCCCcccc-C-CHHHHHHHHHHhcCChhhHHHHH
Q 002311 506 RAPGEVQGSFIAEAVIEHVASTLSMEVDFVRSINLHTHNSLNLFYESSAGELEE-Y-TIPLIWDRLAVSSSFNQRTEVIK 583 (937)
Q Consensus 506 RG~G~pq~~fa~E~~mD~lA~~lG~DP~e~R~kNl~~~~~~~~~~~~~~g~~~~-~-~~~~~l~~~~~~~~~~~r~~~~~ 583 (937)
||||.||++|++|++||++|++|||||+|||+||++++++. +++|+.++ + .+++||+++++. |.+
T Consensus 506 RG~G~pq~~fa~E~~mD~lA~~lg~DP~E~R~rN~~~~gd~-----~~~g~~~~~~~~~~~~l~~~~~~--~~~------ 572 (848)
T TIGR03311 506 RGFGVTQSNFAMECNLNLLAEKVGLSPWEIRFKNAVEPGDT-----LPNGQVVSEGTAIKETLLAVKEV--YEK------ 572 (848)
T ss_pred cCCChhHHHHHHHHHHHHHHHHhCcCHHHHHHHhCCCCCCc-----CCCCceeCCCchHHHHHHHHHHH--hhh------
Confidence 99999999999999999999999999999999999988763 35677776 3 599999998874 431
Q ss_pred HHhhccCCcceeeeecceEeecCCC---CCceEEEEccCCcEEEEeccccccccHHHHHHHHHHHHhcccccCCCCCCCC
Q 002311 584 EFNRSNLWRKKGISRVPIVYDVPLM---STPGKVSILSDGSVVVEVGGIELGQGLWTKVKQMAAFALSSIQCGGMGDLLE 660 (937)
Q Consensus 584 ~~~~~~~~~~~Gig~a~~~~~~g~~---~~~a~v~l~~DG~v~v~~g~~e~GqG~~T~~aqiaAe~Lgi~~~~~~~~~~~ 660 (937)
++++|+++.....|.+.+ .+.+.++++ ||+|+|++|++|||||++|+++||+||+||| |+|
T Consensus 573 -------~~~~G~~~~~~~~g~~~~~~~~~~~~~~~~-DGsv~v~~g~~e~GQG~~T~~aQiaAe~LGi--------p~e 636 (848)
T TIGR03311 573 -------SPCAGIACAFKNSGVGVGIPDTGRCNLAVE-DGKVHIRTSAACIGQGLGTVLTQIVCETTGL--------PPE 636 (848)
T ss_pred -------ccCCeEEEEEEEeccccCCCCcceEEEEEc-CCEEEEEECCCCcCcCHHHHHHHHHHHHHCC--------CHH
Confidence 123455553332333321 356777777 9999999999999999999999999999999 999
Q ss_pred cEEEecCCCccccCCCCCcccchhhhhHHHHHHHHHHHHHHHHHHHHHHHhccCcc--CHHHHHHHHHhcCceeEEEEEe
Q 002311 661 TVRVIQADTLSVIQGGLTAGSTKSEASCQAVRNCCKILVERLTPLRERLQAQMGSV--KWETLIQQAYLQSVSLSASSLY 738 (937)
Q Consensus 661 ~I~v~~~dT~~~p~~~~t~aSr~t~~~g~Av~~Aa~~l~~~l~~~aa~~~~~~~~~--~~~~~~~~~~~~~~~l~~~~~~ 738 (937)
+|+|..+||+.+|++++|+|||+|+++|+||++||++||+||+......+. ...+ .|.++. ..+.+.+.|
T Consensus 637 ~V~v~~~DT~~~p~~~gt~aSR~t~~~G~Av~~Aa~~l~~~l~~~~~~~l~-~~~~~~~~~~~~-------~~~~~~~~~ 708 (848)
T TIGR03311 637 VIVCELPDTALTPDSGTTTASRQSLFTGEATRRAAAKLKEALRGRTLAELE-GEEFYGEYHSIT-------DPLNSDKEN 708 (848)
T ss_pred HEEEEcCCCCCCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHhcCHHHcC-CCEEeecccccc-------CcceeeccC
Confidence 999999999999999999999999999999999999999999754322110 0100 011110 013333333
Q ss_pred cCCCCccccccEEEEEEEEEEECCCCcEEEEEEEEEecCCccCCccccchhhhchhHHHHHHHhccCceecCCCccccCC
Q 002311 739 LPDFTSMKYLNYGAAVSEVEINLLTGETTIVQSDIIYDCGQSLNPAVDLGQIEGSFVQGIGFFMLEEYPTNSDGLVVSEG 818 (937)
Q Consensus 739 ~~~~~~~~~~~~ga~~aeVeVD~~TG~v~V~r~~~v~D~G~vINP~~v~gQi~Ggi~qGiG~AL~Ee~~~d~~G~~l~~~ 818 (937)
.. ++..|+|++|++|| | +|| +|+|+++++|||++|||.+++||||||++||||+||+|++.|| +|++++ +
T Consensus 709 ~~---~~~~~~~~~~~~eV--d-~tG--~v~r~~~v~D~G~vINP~~veGQieGG~~qGlG~AL~Ee~~~d-~G~~~~-~ 778 (848)
T TIGR03311 709 PV---SHVGYGYATQVVIL--D-DAG--KVEKVVAAYDVGRAINPLNLEGQIEGGIVMGLGYALTEDFPLR-EGIPTA-K 778 (848)
T ss_pred CC---CccccceEEEEEEE--C-CCC--eEEEEEEEEeCCccCCHHHHHHHHHHHHHHHHHHHhcCcEEec-CCeecC-C
Confidence 21 12235666666655 6 899 5779999999999999999999999999999999999999998 599886 5
Q ss_pred CCCCCCCCCCCCCCeeEEEEecCCCCCCCCCCccccCCCCccchhhHHHHHHHHHHHHHHhhhcccccCCCCcccccCCC
Q 002311 819 TWTYKIPTLDTIPKQFNVEILNSGHHKKRVLSSKASGEPPLLLAVSVHCATRAAIREARKQLLSWSQLDQSDLTFDLEVP 898 (937)
Q Consensus 819 ~~dY~iP~~~diP~~i~v~~~e~~~~p~gp~GaKGvGE~~~~~~~av~~Ai~nAi~~A~~~~~~~~~~~g~~~~~~~~lP 898 (937)
|+||+||++.|+|+ |+++++|++ +|.+|||+||+||+++++ +++||+|||+||+| +++++||
T Consensus 779 ~~dY~iPt~~D~P~-i~v~~ve~~-~~~~p~GaKGvGE~~~~~---~~~AIanAV~~A~G-------------~r~~~lP 840 (848)
T TIGR03311 779 FGTLGLFRSTQVPE-IETHLIEKN-GTPLAYGAKGVGELATIP---TAPAVAGAYYRFDG-------------KFRLSLP 840 (848)
T ss_pred hhhccCCChhhCCC-eEEEEEeCC-CCCCCCCCccCCCCcccc---hHHHHHHHHHHhHC-------------cCcccCC
Confidence 99999999999996 999999975 688999999999999998 67799999999995 7899999
Q ss_pred CCHHHHH
Q 002311 899 ATVQVVK 905 (937)
Q Consensus 899 ~Tpe~v~ 905 (937)
+||||||
T Consensus 841 ~~p~~v~ 847 (848)
T TIGR03311 841 LENTPYT 847 (848)
T ss_pred CCccccc
Confidence 9999997
No 7
>TIGR02965 xanthine_xdhB xanthine dehydrogenase, molybdopterin binding subunit. Members of the protein family are the molybdopterin-containing large subunit (or, in, eukaryotes, the molybdopterin-binding domain) of xanthine dehydrogenase, and enzyme that reduces the purine pool by catabolizing xanthine to urate. This model is based primarily on bacterial sequences; it does not manage to include all eukaryotic xanthine dehydrogenases and thereby discriminate them from the closely related enzyme aldehyde dehydrogenase.
Probab=100.00 E-value=8.6e-161 Score=1466.36 Aligned_cols=721 Identities=35% Similarity=0.525 Sum_probs=648.6
Q ss_pred CCCCccCCcccccccccccccccCCCCCCcEEEEEEecCCCCeEEEEEecCCcC-CCCEEEEEeccCCCccCCCccCCCC
Q 002311 159 VGEPIPKSGAALQASGEAIFVDDIPSPINCLYGAFVYSTKPLVRIRSVEIKSKS-LPGVSAFLSYKDIPEAGQNIGSRTK 237 (937)
Q Consensus 159 vG~~~~R~d~~~kvtG~a~Y~~Di~~~pgmL~a~~vrSp~ahArI~sID~s~A~-~pGVvaV~T~~Dip~~g~~~~~~~~ 237 (937)
||++++|+|+.+||||+++|++|+..+|||||++++|||++||+|++||+|+|+ +|||++|+|++|+| +.+.. ...
T Consensus 1 ~G~~~~R~d~~~kvtG~a~Y~~Di~~~pgmL~a~~vrSp~aha~I~~iD~s~A~~~pGV~~V~t~~D~p--~~~~~-g~~ 77 (758)
T TIGR02965 1 VGTSLKHESAHKHVAGTAVYIDDIPEPAGTLHAALGLSTRAHARITSMDLSAVRAAPGVVDVLTAADIP--GENDI-SPI 77 (758)
T ss_pred CCCCccCcchHhhCceeeEcccCCCCCCCCEEEEEEecCCCceEEeecchHHHhcCCCcEEEEEHHHCC--CCCCC-CCC
Confidence 699999999999999999999999536899999999999999999999999999 99999999999998 33321 112
Q ss_pred CCCcccCCCCceeecCCcEEEEEeCCHHHHHHhcccceEEEccCCCCCCcCCHHHHhcCCCCcccCCcccccccCChhhh
Q 002311 238 FGPEPLFADELTHCAGQPIAFVVADTQKIANRAADLAVVDYDVGNLEPPILSVEEAVGRSSFFEVPSFLYPKSVGDISKG 317 (937)
Q Consensus 238 ~~~~p~la~~~Vry~G~pVA~VvAet~~~A~~Aa~lI~Vey~~e~L~p~v~d~~~Al~~~a~~~~~~~~~~~~~Gd~e~a 317 (937)
..++|+|++++|||+|||||+|||+|+++|++|+++|+|+| |+| |+++|+++|++++++...+. .....||++++
T Consensus 78 ~~~~~~la~~~Vry~Ge~va~VvA~~~~~A~~A~~~i~V~y--e~l-p~v~d~~~Al~~~a~~~~~~--~~~~~Gd~~~a 152 (758)
T TIGR02965 78 IHDDPLLADGKVEFVGQPIFAVIATSRDAARRAARLAKIEY--EEL-PAVLDIEEALAAGSRFVTPP--LTLERGDAEAA 152 (758)
T ss_pred CCCceeccCCEEEEcCCeEEEEEECCHHHHHHHhhccEEEE--EcC-CccCCHHHHhcCCCCcccCc--ccccCCCHHHH
Confidence 35889999999999999999999999999999999999999 899 99999999999887432111 13478999999
Q ss_pred cccCCeEEEEEEEEecccccCCccCCceEEEECCCCcEEEEeCCCChHHHHHHHHHHhCCCCCcEEEEeccCCCCCCCCC
Q 002311 318 MNEADHKILSAEVKLGSQYYFYMETQTALAVPDEDNCLVVYSSIQCPEYAHATIARCLGIPEHNVRVITRRVGGGFGGKA 397 (937)
Q Consensus 318 f~~A~~vvve~~~~~~~~~h~~mEp~~avA~~~~dg~l~V~~stQ~p~~~r~~lA~~Lglp~~kVrV~~~~vGGgFG~K~ 397 (937)
|++|+++ ||++|++++++|++|||++|+|+|+++|+|+||+|||+||.+|..||++||||++||||+++++|||||+|.
T Consensus 153 f~~a~~v-ve~~y~~~~~~h~~mEp~~~vA~~~~~g~l~v~~stQ~p~~~r~~lA~~Lglp~~~VrV~~~~vGGgFG~K~ 231 (758)
T TIGR02965 153 LAAAPHR-LSGEMRIGGQEHFYLEGQIALAVPGEDGGMHVWSSTQHPSEVQHLVAHVLGVPSHAVTVEVRRMGGGFGGKE 231 (758)
T ss_pred HhhCCEE-EEEEEEECCEeEEecCCceEEEEEcCCCCEEEEECCCChHHHHHHHHHHhCCChHHEEEEeCCCccCccccc
Confidence 9999996 999999999999999999999999877789999999999999999999999999999999999999999998
Q ss_pred cccchHHHHHHHHHHhCCCCEEEEcChhhhhhhcCCCCceEEEEEEEECCCCcEEEEEEEEEeeCCCCCCCCC-chhhhh
Q 002311 398 IKAMPVATACALAAYKLCRPVRIYVNRKTDMVMAGGRHPMKIEYNVGFKSNGKITALQLNILIDAGQYPDVSP-NIPAYM 476 (937)
Q Consensus 398 ~~~~~~~~~aAlaA~~~gRPVk~~~~R~E~~~~~~~R~~~~~~~k~g~d~dG~i~A~~~~~~~d~Gay~~~~~-~~~~~~ 476 (937)
....+.++.||++|+++||||||+|||+|+|+++.+||++.+++|+|+|+||+|+|++++++.|+|+|.+.+. .+....
T Consensus 232 ~~~~~~~~~aa~~A~~~grPVk~~~sR~E~~~~~~~r~~~~~~~~~g~~~dG~i~a~~~~~~~d~Gay~~~~~~~~~~~~ 311 (758)
T TIGR02965 232 TQANLFACLAAVAARKTGRPVKLRPDRDDDMMITGKRHDFLVDYDVGFDDEGRILGVDIDMAARCGFSADLSGPVTDRAL 311 (758)
T ss_pred cccchHHHHHHHHHHHHCCCEEEEechHHhhhhccCccceEEEEEEEECCCCCEEEEEEEEeecCcccCCcchHHHHHHH
Confidence 7443456789999999999999999999999999999999999999999999999999999999999987654 334455
Q ss_pred hccCCCCccccEEEEEEEeecCCCCCCccCCCChhHHHHHHHHHHHHHHHHcCCCHHHHHHhhcCCCCCccccccCCCCc
Q 002311 477 IGALKKYDWGALHFDIKVCRTNLPSRTAMRAPGEVQGSFIAEAVIEHVASTLSMEVDFVRSINLHTHNSLNLFYESSAGE 556 (937)
Q Consensus 477 ~~~~~~Y~ipn~~~~~~~v~TN~~p~ga~RG~G~pq~~fa~E~~mD~lA~~lG~DP~e~R~kNl~~~~~~~~~~~~~~g~ 556 (937)
....++|+|||++++++.|+||++|+|+|||||.||++|++|++||++|++|||||+|||+||++++++. +.+++|+
T Consensus 312 ~~~~~~Y~ipn~~~~~~~v~TN~~~~ga~Rg~G~~q~~fa~E~~mD~~A~~lg~DP~e~R~~Nl~~~g~~---~~~~~g~ 388 (758)
T TIGR02965 312 FHADNAYFLPDVTITSHPLKTNTQSNTAFRGFGGPQGMVAIERIMDEVARALGKDPLEVRKRNFYGKDER---NVTPYHQ 388 (758)
T ss_pred HhcCCcccCCceEEEEEEEEcCCCCCccccCCChHHHHHHHHHHHHHHHHHhCcCHHHHHHHcCCCCCCC---CcCCCce
Confidence 5678999999999999999999999999999999999999999999999999999999999999987743 3356688
Q ss_pred cccC-CHHHHHHHHHHhcCChhhHHHHHHHhhccCCcceeeeecceEeecCCC-----CCceEEEEccCCcEEEEecccc
Q 002311 557 LEEY-TIPLIWDRLAVSSSFNQRTEVIKEFNRSNLWRKKGISRVPIVYDVPLM-----STPGKVSILSDGSVVVEVGGIE 630 (937)
Q Consensus 557 ~~~~-~~~~~l~~~~~~~~~~~r~~~~~~~~~~~~~~~~Gig~a~~~~~~g~~-----~~~a~v~l~~DG~v~v~~g~~e 630 (937)
++++ ++++||+++++.++|+++++...++|+.++|++||+|+++..++.+.. ++.+.|+|++||+|+|++|.+|
T Consensus 389 ~~~s~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~rGiG~a~~~~g~~~~~~~~~~~~a~v~i~~dG~v~v~~g~~e 468 (758)
T TIGR02965 389 TVEDNIIHEIIEELEESSDYAARRAAIRAFNAASPVLKKGIALTPVKFGISFTVTHLNQAGALVHVYTDGSIHLNHGGTE 468 (758)
T ss_pred eccCCcHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCceeEEEEeeeeccccccccccCccceEEEEeCCCcEEEEECCCC
Confidence 8776 999999999999999988777666777788888999999888876542 4789999999999999999999
Q ss_pred ccccHHHHHHHHHHHHhcccccCCCCCCCCcEEEecCCCccccCCCCCcccchhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 002311 631 LGQGLWTKVKQMAAFALSSIQCGGMGDLLETVRVIQADTLSVIQGGLTAGSTKSEASCQAVRNCCKILVERLTPLRERLQ 710 (937)
Q Consensus 631 ~GqG~~T~~aqiaAe~Lgi~~~~~~~~~~~~I~v~~~dT~~~p~~~~t~aSr~t~~~g~Av~~Aa~~l~~~l~~~aa~~~ 710 (937)
||||++|+++||+||+||| |+|+|+|..+||+.+|++++|+|||+|+++|+||++||++||+||+++|++++
T Consensus 469 ~GQG~~T~laQIaAe~LGi--------~~d~V~v~~~DT~~~p~~~gT~gSr~t~~~g~Av~~Aa~~lr~~l~~~Aa~~l 540 (758)
T TIGR02965 469 MGQGLNTKVAQVVAEEFQV--------DIDRVKITATDTDKVPNTSATAASSGSDLNGMAAQDAARQIKERLVAFAAEKW 540 (758)
T ss_pred CCCCHHHHHHHHHHHHhCC--------CHHHEEEEecCccCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999 99999999999999999999999999999999999999999999999998876
Q ss_pred hc---------------cCccCHHHHHHHHHhcCceeEEEEEecCCCC----------ccccccEEEEEEEEEEECCCCc
Q 002311 711 AQ---------------MGSVKWETLIQQAYLQSVSLSASSLYLPDFT----------SMKYLNYGAAVSEVEINLLTGE 765 (937)
Q Consensus 711 ~~---------------~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~----------~~~~~~~ga~~aeVeVD~~TG~ 765 (937)
+. ...++|.+++..++..+..|.++++|..+.. ++.+|+|++|++|||||++||+
T Consensus 541 ~~~~~~l~~~~g~v~~~~~~~~~~~l~~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ga~~~eVeVD~~TG~ 620 (758)
T TIGR02965 541 QVPAEDVRFAPNHVRVGEQRVPFAELVQQAYFARVQLSSTGFYKTPKIHWDRAKGRGRPFYYFAYGAACSEVSVDTLTGE 620 (758)
T ss_pred CCCHHHEEEECCEEEeCCCccCHHHHHHHHhhcCCCcEEEEEEcCCCccccccccCCCCcceeeeeEEEEEEEEecCCCc
Confidence 42 1247899998776544456888888865421 2336789999999999999999
Q ss_pred EEEEEEEEEecCCccCCccccchhhhchhHHHHHHHhccCceecCCCccccCCCCCCCCCCCCCCCCeeEEEEecC-CCC
Q 002311 766 TTIVQSDIIYDCGQSLNPAVDLGQIEGSFVQGIGFFMLEEYPTNSDGLVVSEGTWTYKIPTLDTIPKQFNVEILNS-GHH 844 (937)
Q Consensus 766 v~V~r~~~v~D~G~vINP~~v~gQi~Ggi~qGiG~AL~Ee~~~d~~G~~l~~~~~dY~iP~~~diP~~i~v~~~e~-~~~ 844 (937)
|+|+||++++|||++|||.+++||||||++||||+||+|++.||++|+++|+||+||++|++.|+|++|++.++|+ +++
T Consensus 621 v~v~~~~~~~D~G~~iNP~~~~GQi~Gg~~qGiG~aL~E~~~~d~~G~~l~~~~~dY~iPta~DiP~~~~~~~~e~~~~~ 700 (758)
T TIGR02965 621 YKVLRADILHDVGRSLNPAIDIGQVEGGFVQGMGWLTTEELVWDEKGRLRTHAPSTYKIPAASDRPKDFNVRLFEWSENR 700 (758)
T ss_pred EEEEEEEEEEecCCcCCHHHhhhhhhhhhhhhhhHhhccceEECCCcCCcCCCCcCcCCCChhhCCCccEEEEecCCCCC
Confidence 9999999999999999999999999999999999999999999999999999999999999999994399999994 445
Q ss_pred CCCCCCccccCCCCccchhhHHHHHHHHHHHHHHhhhcccccCCCCcc-cccCCCCCHHHHHHhcCC
Q 002311 845 KKRVLSSKASGEPPLLLAVSVHCATRAAIREARKQLLSWSQLDQSDLT-FDLEVPATVQVVKELCGP 910 (937)
Q Consensus 845 p~gp~GaKGvGE~~~~~~~av~~Ai~nAi~~A~~~~~~~~~~~g~~~~-~~~~lP~Tpe~v~~a~~~ 910 (937)
|.+|||+||+||+++++.+++++||.|||++|++-. + +++++|+|||+||++|+.
T Consensus 701 ~~~p~GaKGvGE~~~~~~aav~~AI~nAi~~a~g~~-----------~~~~~~lP~tpe~v~~al~~ 756 (758)
T TIGR02965 701 EDTIHRSKAVGEPPLMLGISVLFAISDAVASVADYR-----------VCPRLDAPATPERVLMAVEA 756 (758)
T ss_pred CCCCcCCcccCccchhhHHHHHHHHHHHHHHhhccC-----------CCCCCCCCCCHHHHHHHHHh
Confidence 789999999999999987789999999999998510 2 448999999999998863
No 8
>KOG0430 consensus Xanthine dehydrogenase [Nucleotide transport and metabolism]
Probab=100.00 E-value=1.4e-160 Score=1411.16 Aligned_cols=730 Identities=48% Similarity=0.771 Sum_probs=679.2
Q ss_pred hhhhccccCCCCCCCCccCCcccccccccccccccCCCCCCcEEEEEEecCCCCeEEEEEecCCcC-CCCEEEEEeccCC
Q 002311 147 EQVVRLSREYFPVGEPIPKSGAALQASGEAIFVDDIPSPINCLYGAFVYSTKPLVRIRSVEIKSKS-LPGVSAFLSYKDI 225 (937)
Q Consensus 147 ~~~~~~~~~~~~vG~~~~R~d~~~kvtG~a~Y~~Di~~~pgmL~a~~vrSp~ahArI~sID~s~A~-~pGVvaV~T~~Di 225 (937)
.|.+++..+..+||+|+.+..+..++||+|.|+|||+.+++.||++||.|+.|||+|+|||+|+|+ +|||+++++++|+
T Consensus 516 ~Q~~~~~q~~~pVG~pi~~~~a~~qaSGEAvY~dDip~~~n~lh~aFV~St~p~A~I~sID~seAl~~~GVv~~~~akDi 595 (1257)
T KOG0430|consen 516 GQQFETTQEHYPVGRPVEKLEALIQASGEATYVDDIPTPPNTLHAAFVLSTKPHAKILSIDASEALKLPGVVAFFSAKDI 595 (1257)
T ss_pred ceeecCCCCCCcCcchhhhhhhhhhcccceEEecCCCCCCCeeEEEEEEcccCCcEEeeecchhhcCCCceEEEEecccC
Confidence 344555555789999999999999999999999999988999999999999999999999999999 9999999999999
Q ss_pred CccC-CCccCCCCCCCcccCCCCceeecCCcEEEEEeCCHHHHHHhcccceEEEccCCCCCCcCCHHHHhcCCCCcccCC
Q 002311 226 PEAG-QNIGSRTKFGPEPLFADELTHCAGQPIAFVVADTQKIANRAADLAVVDYDVGNLEPPILSVEEAVGRSSFFEVPS 304 (937)
Q Consensus 226 p~~g-~~~~~~~~~~~~p~la~~~Vry~G~pVA~VvAet~~~A~~Aa~lI~Vey~~e~L~p~v~d~~~Al~~~a~~~~~~ 304 (937)
|..+ .+++....+.++++||+++|+|+||||++|||+|.++|++|++||+|+| ++|+|+++++++|++..++++.+.
T Consensus 596 Pg~n~~~i~~~~~~~de~lFA~~~v~~~GQ~ig~ivAdt~~~A~rAA~lVkv~Y--~~l~p~I~t~e~Ai~~~s~~~~~~ 673 (1257)
T KOG0430|consen 596 PGNNMKNIGNMFFPEDEELFATDVVTCVGQPIGVIVADTHELAKRAAKLVKVEY--EELPPPILPSEDAVKDKSLSETEP 673 (1257)
T ss_pred CCCCccccccccCCCccceeecceeEEcCcEEEEEEeCCHHHHHHhhhceEEEe--ccCCCceecHHHHHhhhcccCCCc
Confidence 9432 1233233356899999999999999999999999999999999999999 889888999999999887665333
Q ss_pred cccccccCChhhhc--ccCCeEEEEEEEEecccccCCccCCceEEEECCCCcEEEEeCCCChHHHHHHHHHHhCCCCCcE
Q 002311 305 FLYPKSVGDISKGM--NEADHKILSAEVKLGSQYYFYMETQTALAVPDEDNCLVVYSSIQCPEYAHATIARCLGIPEHNV 382 (937)
Q Consensus 305 ~~~~~~~Gd~e~af--~~A~~vvve~~~~~~~~~h~~mEp~~avA~~~~dg~l~V~~stQ~p~~~r~~lA~~Lglp~~kV 382 (937)
....+++.+.| .++|.+ +|++++.+.|+|+|||||+++|++++| .|.||+|||+|..+|..||.+||||.+||
T Consensus 674 ---~~~~~~~~~~~~~~~~d~i-~~Ge~~mG~QeHFYmEtQttl~vP~e~-el~v~~STQ~~~~tQ~~VA~~Lgipa~~V 748 (1257)
T KOG0430|consen 674 ---RLRKGDVGKSFQLEECDKI-LEGELDMGGQEHFYMEPQTTLVVPFEG-ELQVYSSTQWPDFTQSVVAHVLGLPANKV 748 (1257)
T ss_pred ---cccccCcccccccccccee-EEEEEEecceeEEEeccceeEEeecCC-eEEEEEcCcCcHHHHHHHHHHhCCCccce
Confidence 34455555555 567876 999999999999999999999999877 79999999999999999999999999999
Q ss_pred EEEeccCCCCCCCCCcccchHHHHHHHHHHhCCCCEEEEcChhhhhhhcCCCCceEEEEEEEECCCCcEEEEEEEEEeeC
Q 002311 383 RVITRRVGGGFGGKAIKAMPVATACALAAYKLCRPVRIYVNRKTDMVMAGGRHPMKIEYNVGFKSNGKITALQLNILIDA 462 (937)
Q Consensus 383 rV~~~~vGGgFG~K~~~~~~~~~~aAlaA~~~gRPVk~~~~R~E~~~~~~~R~~~~~~~k~g~d~dG~i~A~~~~~~~d~ 462 (937)
+|++.++|||||||.....+++++|||+|+|++||||.+++|++||..+++|||++.+||+|+++||||+|++.+++.|+
T Consensus 749 ~v~trRvGGGFGGK~trs~~VA~a~ALaA~Kl~RPvr~~l~r~~dM~itG~Rhp~~~~Ykvgf~~~GkI~aL~~~~~~na 828 (1257)
T KOG0430|consen 749 QVKTRRLGGGFGGKETRSNPVAAAAALAAYKLNRPVRFVLSRESDMIITGKRHPFHGKYKVGFKSDGKILALDLEFYENA 828 (1257)
T ss_pred EEEEEeeccccccccccccHHHHHHHHHHHHhCCCEEEEecchhhhhhcCCccceEEeEEEEEccCCeEEEEehhhhhcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCchhhhhhccCCCCccccEEEEEEEeecCCCCCCccCCCChhHHHHHHHHHHHHHHHHcCCCHHHHHHhhcCC
Q 002311 463 GQYPDVSPNIPAYMIGALKKYDWGALHFDIKVCRTNLPSRTAMRAPGEVQGSFIAEAVIEHVASTLSMEVDFVRSINLHT 542 (937)
Q Consensus 463 Gay~~~~~~~~~~~~~~~~~Y~ipn~~~~~~~v~TN~~p~ga~RG~G~pq~~fa~E~~mD~lA~~lG~DP~e~R~kNl~~ 542 (937)
|+..+.++.+.++++++.++|++||+|+++++|.||.|+++||||||.||+++..|++|.++|.++|+||.|+|++|+++
T Consensus 829 G~s~d~S~~~~~~~~~~~n~Y~~~~~r~~G~~ckTN~pSnTa~Rg~G~pQG~~i~E~iie~VA~~~g~d~eeVR~~N~y~ 908 (1257)
T KOG0430|consen 829 GWSKDESPSVLRAMFHSDNVYEIGDVRFDGYVCKTNLPSNTAFRGPGSPQGILITENIIERIAFELGKDPEEVRKINFYV 908 (1257)
T ss_pred CCCcCcchHHHhhhhhhhheecccceeeeeeEEecCCCCcchhcCCCChhhHHHHHHHHHHHHHHhCCCHHHHhhhhhhh
Confidence 99999999777888899999999999999999999999999999999999999999999999999999999999999988
Q ss_pred CCCccccccCCCCccccCCHHHHHHHHHHhcCChhhHHHHHHHhhccCCcceeeeecceEeecCCCC-CceEEEEccCCc
Q 002311 543 HNSLNLFYESSAGELEEYTIPLIWDRLAVSSSFNQRTEVIKEFNRSNLWRKKGISRVPIVYDVPLMS-TPGKVSILSDGS 621 (937)
Q Consensus 543 ~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~r~~~~~~~~~~~~~~~~Gig~a~~~~~~g~~~-~~a~v~l~~DG~ 621 (937)
.++... + .|....+.+++||+++.+.++|++|+.++++||+.++|+||||++.+..+++++.. ..++|.|+.|||
T Consensus 909 eg~~~~-~---~~~~~~~~l~~~w~~~~~sS~y~~Rk~ev~~FN~~N~WrKRGi~~vp~~f~i~~~~~~~a~V~Iy~DGS 984 (1257)
T KOG0430|consen 909 EGSLTY-Y---HGELQHCTLPQLWPECLVSSKFEKRKSEIEEFNKENRWKKRGLAMVPMKFGISFTGQAPALVHIYTDGT 984 (1257)
T ss_pred cccccc-c---CCCcccCcHHHHHHHHHHhchHHHHHHHHHHhhhcChhhhcCceEeeeecceeccCCCceEEEEEcCCe
Confidence 877532 2 24555569999999999999999999999999999999999999999999998875 999999999999
Q ss_pred EEEEeccccccccHHHHHHHHHHHHhcccccCCCCCCCCcEEEecCCCccccCCCCCcccchhhhhHHHHHHHHHHHHHH
Q 002311 622 VVVEVGGIELGQGLWTKVKQMAAFALSSIQCGGMGDLLETVRVIQADTLSVIQGGLTAGSTKSEASCQAVRNCCKILVER 701 (937)
Q Consensus 622 v~v~~g~~e~GqG~~T~~aqiaAe~Lgi~~~~~~~~~~~~I~v~~~dT~~~p~~~~t~aSr~t~~~g~Av~~Aa~~l~~~ 701 (937)
|.|.+|++|||||++|+++|+||+.||| |++.|++.+.||+.+|++..|+||.++.+.|.||+.||++|.+|
T Consensus 985 V~v~hgGiEmGQGL~TK~~Qvaa~~l~i--------p~~~v~v~~tsT~~v~na~~Ta~S~~Sd~~g~AV~~~C~~l~~R 1056 (1257)
T KOG0430|consen 985 VVVTHGGIEMGQGLNTKVAQVAAYALGI--------PLSSVFVSETSTDKVPNASPTAASVSSDMYGAAVLDACETINAR 1056 (1257)
T ss_pred EEEEECcEEcccchhHHHHHHHHHHhCC--------cccceEEeecccccccCCCccccccccccccHHHHHHHHHHHHh
Confidence 9999999999999999999999999999 99999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhccCccCHHHHHHHHHhcCceeEEEEEecCCCCccccccEEEEEEEEEEECCCCcEEEEEEEEEecCCccC
Q 002311 702 LTPLRERLQAQMGSVKWETLIQQAYLQSVSLSASSLYLPDFTSMKYLNYGAAVSEVEINLLTGETTIVQSDIIYDCGQSL 781 (937)
Q Consensus 702 l~~~aa~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ga~~aeVeVD~~TG~v~V~r~~~v~D~G~vI 781 (937)
|+|+..++ ...+|.+++.++|.+.+.|+++.+|.+++.++.|++||++++|||||++||..+|+|.+++.|||.++
T Consensus 1057 L~Pv~~k~----~~~tw~~~i~~AY~q~V~LsAs~~~~~~g~~~~Y~~yG~a~sEVEID~LTG~~~ilRtDIv~D~G~SL 1132 (1257)
T KOG0430|consen 1057 LEPVKSKH----NFNTWEELIQAAYGQSINLSASDWYKPEGDMFPYLTYGAAASEVEIDTLTGDTEVLRVDILYDCGESL 1132 (1257)
T ss_pred hhhhhhhc----CCccHHHHHHHHhhCccceeeeccccCCCCcccceeccceeEEEEEEEecCcceEEEEEEeeeccccc
Confidence 99998644 23799999999999999999999999988899999999999999999999999999999999999999
Q ss_pred CccccchhhhchhHHHHHHHhccCceecCCCccccCCCCCCCCCCCCCCCCeeEEEEecCCCCCCCCCCccccCCCCccc
Q 002311 782 NPAVDLGQIEGSFVQGIGFFMLEEYPTNSDGLVVSEGTWTYKIPTLDTIPKQFNVEILNSGHHKKRVLSSKASGEPPLLL 861 (937)
Q Consensus 782 NP~~v~gQi~Ggi~qGiG~AL~Ee~~~d~~G~~l~~~~~dY~iP~~~diP~~i~v~~~e~~~~p~gp~GaKGvGE~~~~~ 861 (937)
||.++.|||||+++||+|+.++||+.||++|++++++.|+||||++.|||.+|+|.+++..+++.+.|.+|++||||+.+
T Consensus 1133 NPaIDIGQIEGAFvQGlG~~t~Eel~~~~~G~l~t~gt~~YKiP~~~dIP~~FrV~LL~~~pn~~~v~sSKA~GEPPl~L 1212 (1257)
T KOG0430|consen 1133 NPAIDIGQIEGAFVQGLGLVTLEELIYDPEGSLLTNGTWTYKIPGAKDIPKDFRVELLNKNPNKAGVMSSKATGEPPLFL 1212 (1257)
T ss_pred CcccccchhhhHHHhchhhhhhhhheeCCCceEeecCCCcccCCCcccCchheEeeeccCCCCccceeeccccCCChHHH
Confidence 99999999999999999999999999998899999999999999999999999999996667888999999999999999
Q ss_pred hhhHHHHHHHHHHHHHHhhhcccccCCCCcccccCCCCCHHHHHHhcCCC
Q 002311 862 AVSVHCATRAAIREARKQLLSWSQLDQSDLTFDLEVPATVQVVKELCGPD 911 (937)
Q Consensus 862 ~~av~~Ai~nAi~~A~~~~~~~~~~~g~~~~~~~~lP~Tpe~v~~a~~~~ 911 (937)
+++++.||.+||..|+.. ++....|+|||+|+.+|+..
T Consensus 1213 a~sv~fAi~~Ai~aAR~~------------~f~L~~PaTpe~i~~~c~~~ 1250 (1257)
T KOG0430|consen 1213 AASVFFAIRQAIKSARKD------------WFRLEAPATPERIRLACGDE 1250 (1257)
T ss_pred HHHHHHHHHHHHHHHhhc------------cccCCCCCCHHHHHHhhcch
Confidence 999999999999999842 46689999999999999986
No 9
>TIGR03194 4hydrxCoA_A 4-hydroxybenzoyl-CoA reductase, alpha subunit. This model represents the largest chain, alpha, of the enzyme 4-hydroxybenzoyl-CoA reductase. In species capable of degrading various aromatic compounds by way of benzoyl-CoA, this enzyme can convert 4-hydroxybenzoyl-CoA to benzoyl-CoA.
Probab=100.00 E-value=2.5e-155 Score=1414.36 Aligned_cols=697 Identities=24% Similarity=0.305 Sum_probs=625.6
Q ss_pred ccCCcccccccccccccccCCCCCCcEEEEEEecCCCCeEEEEEecCCcC-CCCEEEEEeccCCCccCCCccCCCCCCCc
Q 002311 163 IPKSGAALQASGEAIFVDDIPSPINCLYGAFVYSTKPLVRIRSVEIKSKS-LPGVSAFLSYKDIPEAGQNIGSRTKFGPE 241 (937)
Q Consensus 163 ~~R~d~~~kvtG~a~Y~~Di~~~pgmL~a~~vrSp~ahArI~sID~s~A~-~pGVvaV~T~~Dip~~g~~~~~~~~~~~~ 241 (937)
++|+|+.+||||+++|++|+. +|||||++++|||++||||+|||+|+|+ +|||++|+|++|+| + +.+......++
T Consensus 1 ~~R~d~~~kvtG~a~Y~~D~~-~pgmL~a~vvrSp~ahA~I~siD~s~A~a~pGV~~V~t~~D~p--~-~~g~~~~~~d~ 76 (746)
T TIGR03194 1 VPLVDGVEKVTGKAKYTADLA-APGALVGRILRSPHAHARILAIDTSEAEALPGVIAVVTGADCP--V-PYGVLPIAENE 76 (746)
T ss_pred CcCcchHhhCccccccccCCC-CCCCEEEEEEecCCccEEEeeccHHHHHhCCCcEEEEeHHHCC--c-ccCCCCCCCCC
Confidence 489999999999999999997 6899999999999999999999999999 99999999999998 2 22222223588
Q ss_pred ccCCCCceeecCCcEEEEEeCCHHHHHHhcccceEEEccCCCCCCcCCHHHHhcCCCC--cc-cCCccc---ccccCChh
Q 002311 242 PLFADELTHCAGQPIAFVVADTQKIANRAADLAVVDYDVGNLEPPILSVEEAVGRSSF--FE-VPSFLY---PKSVGDIS 315 (937)
Q Consensus 242 p~la~~~Vry~G~pVA~VvAet~~~A~~Aa~lI~Vey~~e~L~p~v~d~~~Al~~~a~--~~-~~~~~~---~~~~Gd~e 315 (937)
|+|++++|||+|||||+|+|+|+++|++|+++|+||| |+| |+++|+++|++++++ |+ .++|+. ....||++
T Consensus 77 ~~la~~~Vr~~G~~VA~VvA~t~~~A~~A~~~v~Vey--e~l-p~v~d~~~Al~~~a~~ih~~~~~Nv~~~~~~~~Gd~~ 153 (746)
T TIGR03194 77 YPLARDKVRYRGDPVAAVAAVDEVTAEKALALIKVEY--EEL-PAYMDPKAAMKAGAILLHDNKPGNIEREVHNEFGDVA 153 (746)
T ss_pred ccCCCCeEEEcCCeEEEEEECCHHHHHHHhcCCcEEE--ecC-CCcCCHHHHhcCCCCccCCCCCCcEEEEEeeccCCHh
Confidence 9999999999999999999999999999999999999 899 999999999998875 43 235652 45789999
Q ss_pred hhcccCCeEEEEEEEEecccccCCccCCceEEEECC-CCcEEEEeCCCChHHHHHHHHHHhCCCCCcEEEEeccCCCCCC
Q 002311 316 KGMNEADHKILSAEVKLGSQYYFYMETQTALAVPDE-DNCLVVYSSIQCPEYAHATIARCLGIPEHNVRVITRRVGGGFG 394 (937)
Q Consensus 316 ~af~~A~~vvve~~~~~~~~~h~~mEp~~avA~~~~-dg~l~V~~stQ~p~~~r~~lA~~Lglp~~kVrV~~~~vGGgFG 394 (937)
++|++|+++ ||++|++++|+|++|||++|+|+|++ +|+|+||+|||+||.+|..||++||||++||||+++++|||||
T Consensus 154 ~a~~~a~~v-ve~~~~~~~~~h~~mEp~~~~A~~~~~~~~l~v~~stQ~p~~~r~~va~~Lglp~~kVrV~~~~vGGgFG 232 (746)
T TIGR03194 154 AAFAEADLI-REKTFTCAEVNHAHMEPNATLAEYDPVRGMLTLNSVTQVPYYVHLKLARCLQMDSARIRVIKPFLGGGFG 232 (746)
T ss_pred HHhccCCEE-EEEEEEECCEeEEccCCCeEEEEEeCCCCeEEEEECCCchHHHHHHHHHHhCCCHHHeEEEcCCCcCccc
Confidence 999999996 99999999999999999999999985 5789999999999999999999999999999999999999999
Q ss_pred CCCcccchHHHHHHHHHHhCCCCEEEEcChhhhhhhcCCCCceEEEEEEEECCCCcEEEEEEEEEeeCCCCCCCCC-chh
Q 002311 395 GKAIKAMPVATACALAAYKLCRPVRIYVNRKTDMVMAGGRHPMKIEYNVGFKSNGKITALQLNILIDAGQYPDVSP-NIP 473 (937)
Q Consensus 395 ~K~~~~~~~~~~aAlaA~~~gRPVk~~~~R~E~~~~~~~R~~~~~~~k~g~d~dG~i~A~~~~~~~d~Gay~~~~~-~~~ 473 (937)
+|... .++++.+|++|+++||||||++||+|+|.++.+||++.+++|+|+|+||+|+|++++++.|+|+|.+++. ...
T Consensus 233 ~K~~~-~~~~~~aal~a~~~grPVk~~~~ReE~~~~~~~R~~~~~~~~~g~~~dG~i~a~~~~~~~d~Gay~~~~~~~~~ 311 (746)
T TIGR03194 233 ARVEP-LNFEIIAGLLARKAKGTVRLLQTREETFITHRGRPQTYVKMKIGLKKDGKITACAAEVVQRGGAYAGYGIVTIL 311 (746)
T ss_pred ccccc-chHHHHHHHHHHHhCCCEEEecchhhhhhcCCCCCceEEEEEEEECCCCeEEEEEEEEeecccccCCcchHHHH
Confidence 99864 3467889999999999999999999999999999999999999999999999999999999999998775 333
Q ss_pred hhhhccCCCCccccEEEEEEEeecCCCCCCccCCCChhHHHHHHHHHHHHHHHHcCCCHHHHHHhhcCCCCCccccccCC
Q 002311 474 AYMIGALKKYDWGALHFDIKVCRTNLPSRTAMRAPGEVQGSFIAEAVIEHVASTLSMEVDFVRSINLHTHNSLNLFYESS 553 (937)
Q Consensus 474 ~~~~~~~~~Y~ipn~~~~~~~v~TN~~p~ga~RG~G~pq~~fa~E~~mD~lA~~lG~DP~e~R~kNl~~~~~~~~~~~~~ 553 (937)
.......++|+|||++++++.|+||++|+|+|||||.||+.||+|++||++|++|||||+|||+||+++++ +.++
T Consensus 312 ~~~~~~~g~Y~ipn~~~~~~~v~TN~~~~ga~Rg~G~~q~~fa~E~~mD~lA~~lg~DPve~R~~N~~~~~-----~~~~ 386 (746)
T TIGR03194 312 YAGALLHGLYDIPAVKYDGYRVYTNTPPCGAMRGHGTVDTRAAFESLLDEMAAELGIDPFAIRRRNLLQAP-----TVTM 386 (746)
T ss_pred HHHHhcCCCcccceEEEEEEEEEcCCCCCCCCCCCChhHHHHHHHHHHHHHHHHhCcCHHHHHHHhCcCCC-----CCCC
Confidence 44456679999999999999999999999999999999999999999999999999999999999999765 3456
Q ss_pred CCccccC-CHHHHHHHHHHhcCChhhHHHHHHHhhccCCcceeeeecceEeecCC---------CCCceEEEEccCCcEE
Q 002311 554 AGELEEY-TIPLIWDRLAVSSSFNQRTEVIKEFNRSNLWRKKGISRVPIVYDVPL---------MSTPGKVSILSDGSVV 623 (937)
Q Consensus 554 ~g~~~~~-~~~~~l~~~~~~~~~~~r~~~~~~~~~~~~~~~~Gig~a~~~~~~g~---------~~~~a~v~l~~DG~v~ 623 (937)
+|+.+++ ++++||++++++++|.+|++.. +++||+|+++..++++. .++++.|+|++||+|+
T Consensus 387 ~g~~~~s~~~~~~l~~~~e~~~w~~~~~~~--------~~~rGiG~a~~~~~~~~~~~~~~~~~~~~~a~v~l~~dG~v~ 458 (746)
T TIGR03194 387 NDLRVMSYGLPECLEKVEQASGWEERKGRL--------PKGRGLGIACSHFVSGSAKPIHFTGEPHATVALKLDFDGGIT 458 (746)
T ss_pred CCceecCCCHHHHHHHHHHhcCchhhhhhc--------cccEEEEEEEEEEeccCCcccccCCCCCceEEEEEcCCccEE
Confidence 7888776 9999999999999998764321 24678888887775432 2578999999999999
Q ss_pred EEeccccccccHHHHHHHHHHHHhcccccCCCCCCCCcEEEecCCCccccCCCCCcccchhhhhHHHHHHHHHHHHHHHH
Q 002311 624 VEVGGIELGQGLWTKVKQMAAFALSSIQCGGMGDLLETVRVIQADTLSVIQGGLTAGSTKSEASCQAVRNCCKILVERLT 703 (937)
Q Consensus 624 v~~g~~e~GqG~~T~~aqiaAe~Lgi~~~~~~~~~~~~I~v~~~dT~~~p~~~~t~aSr~t~~~g~Av~~Aa~~l~~~l~ 703 (937)
|++|++|||||++|+++||+||+||+ |+|+|+|..+||+.+|++++|+|||+|+++|+||++||++||+||+
T Consensus 459 v~~g~~e~GqG~~T~~~qiaAe~LGi--------p~d~V~v~~~DT~~~p~~~gt~~Sr~t~~~G~Av~~Aa~~l~~~l~ 530 (746)
T TIGR03194 459 LLTGAADIGQGSSTIASQVAAEVLGV--------RLSRIRVISADSALTPKDNGSYSSRVTFMVGNAAIDAAEELKGVLV 530 (746)
T ss_pred EEEcCCCCCCCHHHHHHHHHHHHhCC--------CHHhEEEEccCCCCCCCCCCChhHhHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999 9999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhc------------------cCccCHHHHHHHHHhcCceeEEEEEecCCCC------------ccccccEEEE
Q 002311 704 PLRERLQAQ------------------MGSVKWETLIQQAYLQSVSLSASSLYLPDFT------------SMKYLNYGAA 753 (937)
Q Consensus 704 ~~aa~~~~~------------------~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~------------~~~~~~~ga~ 753 (937)
++++++++. +..++|.+++..++.....+.+.+.|..... ...+|+|+||
T Consensus 531 ~~aa~~l~~~~~~l~~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ 610 (746)
T TIGR03194 531 AAAAKKLDAREEDIECAGEMFFVSGSADPGLSFQEVVKAALVDSGTITVKGTYTCPPEFQGGKKRGGAVGSTMGFSYAAQ 610 (746)
T ss_pred HHHHHHhCCCHHHEEEECCEEEECCCCCCceeHHHHHHHhcccCCCceEEEEecCCCccccccccccccCcccccceeEE
Confidence 999887642 1236899988544333335777777752110 1125789999
Q ss_pred EEEEEEECCCCcEEEEEEEEEecCCccCCccccchhhhchhHHHHHHHhccCceecCCCccccCCCCCCCCCCCCCCCCe
Q 002311 754 VSEVEINLLTGETTIVQSDIIYDCGQSLNPAVDLGQIEGSFVQGIGFFMLEEYPTNSDGLVVSEGTWTYKIPTLDTIPKQ 833 (937)
Q Consensus 754 ~aeVeVD~~TG~v~V~r~~~v~D~G~vINP~~v~gQi~Ggi~qGiG~AL~Ee~~~d~~G~~l~~~~~dY~iP~~~diP~~ 833 (937)
+||||||++||+|+|+|+++++|||++|||++++||||||++||||+||+|++.|| +|+++|+||+||+||++.|+|+
T Consensus 611 ~aeVeVD~~TG~v~v~~~~~~~D~G~viNP~~v~gQi~Gg~~~GiG~aL~E~~~~d-~G~~~~~~l~~Y~ipt~~d~P~- 688 (746)
T TIGR03194 611 VVEVSVDEETGKVTVHKVWVAVDCGKAINPLAVEGQVQGAVWMGMGQALSEETVYD-NGRMKHASLLDYRVPTIVESPD- 688 (746)
T ss_pred EEEEEEECCCCCEEEEEEEEEEeCCCcCCHHHHHHHHHHHHHHHHHHHhcCceEec-CCeECCCChhhccCCChhccCC-
Confidence 99999999999999999999999999999999999999999999999999999998 4999999999999999999995
Q ss_pred eEEEEecCCCCCCCCCCccccCCCCccchhhHHHHHHHHHHHHHHhhhcccccCCCCcccccCCCCCHHHHHHhc
Q 002311 834 FNVEILNSGHHKKRVLSSKASGEPPLLLAVSVHCATRAAIREARKQLLSWSQLDQSDLTFDLEVPATVQVVKELC 908 (937)
Q Consensus 834 i~v~~~e~~~~p~gp~GaKGvGE~~~~~~~av~~Ai~nAi~~A~~~~~~~~~~~g~~~~~~~~lP~Tpe~v~~a~ 908 (937)
|+++++|++ +|.+|||+||+||+++++ +++||+|||++|+| ++++++|+|||+||++|
T Consensus 689 i~v~~ve~~-~~~~p~Gakg~GE~~~~~---~~~AIanAI~~A~G-------------~r~~~lP~tpe~v~~al 746 (746)
T TIGR03194 689 IEVIIVESM-DPNGPFGAKEASEGALAG---FLPAIHNAVYDAVG-------------VRATDLPLTPDRVTEAL 746 (746)
T ss_pred eEEEEEeCC-CCCCCCCCCcCCCCcccc---hHHHHHHHHHHhhC-------------CCcccCCCCHHHHHhhC
Confidence 999999975 678899999999999997 77899999999995 67899999999999875
No 10
>TIGR02416 CO_dehy_Mo_lg carbon-monoxide dehydrogenase, large subunit. This model represents the large subunits of group of carbon-monoxide dehydrogenases that include molybdenum as part of the enzymatic cofactor. There are various forms of carbon-monoxide dehydrogenase; Salicibacter pomeroyi DSS-3, for example, has two forms. Note that, at least in some species, the active site Cys is modified with a selenium attached to (rather than replacing) the sulfur atom. This is termed selanylcysteine, and created post-translationally, in contrast to selenocysteine incorporation during translation as for many other selenoproteins.
Probab=100.00 E-value=5.3e-155 Score=1417.51 Aligned_cols=704 Identities=22% Similarity=0.253 Sum_probs=619.8
Q ss_pred cccccccccccccccCCCCCCcEEEEEEecCCCCeEEEEEecCCcC-CCCEEEEEeccCCCccCCCccCCCC-C-CCccc
Q 002311 167 GAALQASGEAIFVDDIPSPINCLYGAFVYSTKPLVRIRSVEIKSKS-LPGVSAFLSYKDIPEAGQNIGSRTK-F-GPEPL 243 (937)
Q Consensus 167 d~~~kvtG~a~Y~~Di~~~pgmL~a~~vrSp~ahArI~sID~s~A~-~pGVvaV~T~~Dip~~g~~~~~~~~-~-~~~p~ 243 (937)
|+.+||||+++|++|+. +|||||++++|||++||||++||+|+|+ +|||++|+|++|+|. .+...... . .++|+
T Consensus 1 e~~r~vtG~a~Y~~Di~-~pgmL~a~~vrSp~aha~I~~ID~s~A~~~pGV~~V~t~~D~p~--~~~~~~~~~~~~~~~~ 77 (770)
T TIGR02416 1 EDIRFIQGKGNYVDDVK-LPGMLHGDIVRSPHAHARIKSIDTSAAKALPGVFAVLTAADLKP--LNLHWMPTLAGDVQAV 77 (770)
T ss_pred CCcccccccccccccCC-CCCCEEEEEEcCCCccEEEecccHHHHhhCCCcEEEEEHHHcCC--ccCCcCCCCCCCCccc
Confidence 57889999999999997 7899999999999999999999999999 999999999999972 22111111 1 23789
Q ss_pred CCCCceeecCCcEEEEEeCCHHHHHHhcccceEEEccCCCCCCcCCHHHHhcCCCC--ccc-CC------------cc-c
Q 002311 244 FADELTHCAGQPIAFVVADTQKIANRAADLAVVDYDVGNLEPPILSVEEAVGRSSF--FEV-PS------------FL-Y 307 (937)
Q Consensus 244 la~~~Vry~G~pVA~VvAet~~~A~~Aa~lI~Vey~~e~L~p~v~d~~~Al~~~a~--~~~-~~------------~~-~ 307 (937)
|++++|||+|||||+|||+|+++|++|+++|+|+| |+| |+|+|+++|++++++ |+. ++ |. .
T Consensus 78 la~~~Vry~Ge~Va~VvA~t~~~A~~A~~~v~V~y--e~l-p~v~d~~~A~~~~a~~ih~~~~~~~~~~~~~~n~~~~~~ 154 (770)
T TIGR02416 78 LADEKVLFQNQEVAFVVAKDRYVAADAIELVEVDY--EPL-PVVIDPFKALEPDAPVLREDLKGKTTGAHGARKHHNHIF 154 (770)
T ss_pred CcCCEEEEcCCcEEEEEECCHHHHHHHhccceeee--ecC-CccCCHHHHhcCCCceecCCCCCccccccccccccceee
Confidence 99999999999999999999999999999999999 889 999999999998874 431 11 22 2
Q ss_pred cc---ccCChhhhcccCCeEEEEEEEEecccccCCccCCceEEEECC-CCcEEEEeCCCChHHHHHHHHHHhCCCCCcEE
Q 002311 308 PK---SVGDISKGMNEADHKILSAEVKLGSQYYFYMETQTALAVPDE-DNCLVVYSSIQCPEYAHATIARCLGIPEHNVR 383 (937)
Q Consensus 308 ~~---~~Gd~e~af~~A~~vvve~~~~~~~~~h~~mEp~~avA~~~~-dg~l~V~~stQ~p~~~r~~lA~~Lglp~~kVr 383 (937)
.. ..||++++|++|+++ ||++|++++++|+||||++|+|+||+ +|+|+||+|||+||.+|..||++||||++|||
T Consensus 155 ~~~~gd~gd~~~af~~a~~v-ve~~~~~~~~~h~~mEp~~~iA~~~~~~g~l~v~~stQ~p~~~r~~vA~~Lglp~~~Vr 233 (770)
T TIGR02416 155 RWEIGDKAATDAVFAKAEVV-VKQMMTYPRVHPSPLETCGCVASMDPIKGELTLWGTFQAPHVIRTVVSLISGLPEHKIR 233 (770)
T ss_pred EEecCCccchhHHhccCCEE-EEEEEEeCceeeEcCCCCeEEEEEeCCCCeEEEEECCCcHHHHHHHHHHHhCCCHHHEE
Confidence 22 445679999999996 99999999999999999999999985 57899999999999999999999999999999
Q ss_pred EEeccCCCCCCCCCcccchHHHHHHHHHHhCCCCEEEEcChhhhhhhcCCCCceEEEEEEEECCCCcEEEEEEEEEeeCC
Q 002311 384 VITRRVGGGFGGKAIKAMPVATACALAAYKLCRPVRIYVNRKTDMVMAGGRHPMKIEYNVGFKSNGKITALQLNILIDAG 463 (937)
Q Consensus 384 V~~~~vGGgFG~K~~~~~~~~~~aAlaA~~~gRPVk~~~~R~E~~~~~~~R~~~~~~~k~g~d~dG~i~A~~~~~~~d~G 463 (937)
|+++++|||||+|... +...+++|++|+++||||||+|||+|+|+++.+||++.+++|+|+|+||+|+|++++++.|+|
T Consensus 234 V~~~~vGGgFG~K~~~-~~~~~~aa~~A~~~gRPVk~~~sR~E~~~~~~~r~~~~~~~k~g~d~dG~i~a~~~~~~~d~G 312 (770)
T TIGR02416 234 VISPDIGGGFGNKVGI-YPGYVCAIVASIVLGVPVKWVEDRMENLSTTSFARDYHMTGELAATKDGKILAMRCNVLADHG 312 (770)
T ss_pred EEcCCCCCCccccccc-ccHHHHHHHHHHHhCCCEEEecchHHhhhcCCCCCceEEEEEEEECCCCcEEEEEEEEEeecc
Confidence 9999999999999864 344456889999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCC-chhhhhh--ccCCCCccccEEEEEEEeecCCCCCC-ccC-CCChhHHHHHHHHHHHHHHHHcCCCHHHHHHh
Q 002311 464 QYPDVSP-NIPAYMI--GALKKYDWGALHFDIKVCRTNLPSRT-AMR-APGEVQGSFIAEAVIEHVASTLSMEVDFVRSI 538 (937)
Q Consensus 464 ay~~~~~-~~~~~~~--~~~~~Y~ipn~~~~~~~v~TN~~p~g-a~R-G~G~pq~~fa~E~~mD~lA~~lG~DP~e~R~k 538 (937)
+|.+++. ++..... ...++|+|||++++++.|+||++|.+ +|| |||.||++|++|++||++|++|||||+|||+|
T Consensus 313 ay~~~~~~~~~~~~~~~~~~g~Y~ipn~~~~~~~v~TN~~p~gta~Rgg~G~pq~~fa~E~~mD~~A~~lg~DP~e~R~~ 392 (770)
T TIGR02416 313 AFDACADPSKWPAGFFNICTGSYDIPVAHCAVDGVYTNKAPGGVAYRCSFRVTEAVYAIERAVDTLAQRLEMDSADLRIK 392 (770)
T ss_pred ccCCCccchhhhhhhhhhcCCccccceEEEEEEEEECCCCCCCCccccCCccHHHHHHHHHHHHHHHHHhCcCHHHHHHH
Confidence 9987654 3232222 35799999999999999999999998 999 89999999999999999999999999999999
Q ss_pred hcCCCCCccccccCCCCccccC-CHHHHHHHHHHhcCChhhHHHHHHHhhccCC-cceeeeecceEeecCCC--------
Q 002311 539 NLHTHNSLNLFYESSAGELEEY-TIPLIWDRLAVSSSFNQRTEVIKEFNRSNLW-RKKGISRVPIVYDVPLM-------- 608 (937)
Q Consensus 539 Nl~~~~~~~~~~~~~~g~~~~~-~~~~~l~~~~~~~~~~~r~~~~~~~~~~~~~-~~~Gig~a~~~~~~g~~-------- 608 (937)
|++++++ +||.+++|+.+++ ++++||+++++.++|+++++.+.+.++.+++ +.+|+|++++.+..+.+
T Consensus 393 N~~~~~~--~p~~~~~g~~~~s~~~~~~l~~~~~~~~~~~~~~~~~~~~~~g~~~~~~G~G~a~~~~~~~~~~~~~~~~~ 470 (770)
T TIGR02416 393 NFIQPEQ--FPYTAPLGWEYDSGDYPLAMKKAMDTVDYHQLRAEQAAKRKRGETRELMGIGISFFTEIVGAGPSKNCDIL 470 (770)
T ss_pred hCCCCcc--CccccCCCceecCCCHHHHHHHHHHhcCchhhHHHHHHHHhcCCCCceEEEEEEEEEEeccCCCccccccc
Confidence 9998864 4788888988877 9999999999999999876654444443433 34688887765554432
Q ss_pred ----CCceEEEEccCCcEEEEeccccccccHHHHHHHHHHHHhcccccCCCCCCCCcEEEecCCCccccCCCCCcccchh
Q 002311 609 ----STPGKVSILSDGSVVVEVGGIELGQGLWTKVKQMAAFALSSIQCGGMGDLLETVRVIQADTLSVIQGGLTAGSTKS 684 (937)
Q Consensus 609 ----~~~a~v~l~~DG~v~v~~g~~e~GqG~~T~~aqiaAe~Lgi~~~~~~~~~~~~I~v~~~dT~~~p~~~~t~aSr~t 684 (937)
++.+.|+|++||+|+|++|++|||||++|+++||+||+||| |+|+|+|..+||+.+|++++|+|||+|
T Consensus 471 ~~~~~~~a~v~l~~dG~v~v~~g~~e~GQG~~T~~aQiaAe~LGi--------p~e~V~v~~~DT~~~p~~~gt~~Sr~t 542 (770)
T TIGR02416 471 GVGMFDSCEIRIHPTGSAIARMGTKSQGQGHETTYAQIIATELGI--------PAEDIMVEEGDTDTAPYGLGTYGSRST 542 (770)
T ss_pred ccCccceEEEEECCCceEEEEECCCCCCCCchHHHHHHHHHHHCC--------CHHHEEEEecCCCCCCCCCCCchhHHH
Confidence 35699999999999999999999999999999999999999 999999999999999999999999999
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHhc--------c----------CccCHHHHHHHHHhc-----CceeEEEEEecCC
Q 002311 685 EASCQAVRNCCKILVERLTPLRERLQAQ--------M----------GSVKWETLIQQAYLQ-----SVSLSASSLYLPD 741 (937)
Q Consensus 685 ~~~g~Av~~Aa~~l~~~l~~~aa~~~~~--------~----------~~~~~~~~~~~~~~~-----~~~l~~~~~~~~~ 741 (937)
+++|+|+++||++||+||+++|+++++. + ..++|.+++..++.. ..+|.+.++|.+.
T Consensus 543 ~~~G~Av~~Aa~~l~~~l~~~aa~~l~~~~~~l~~~~g~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~ 622 (770)
T TIGR02416 543 PVAGAATALAARKIKAKAQMIAAHMLEVHEGDLEWDVDRFRVKGDPSKFKTMADIAWAAYNSPPPGLEPGLEAVNYYDPP 622 (770)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHEEEECCEEEECCCCCCcccHHHHHHHHhccCccCcCCceEEEEEeCCC
Confidence 9999999999999999999998877542 1 137899998765432 1247788888654
Q ss_pred CCccccccEEEEEEEEEEECCCCcEEEEEEEEEecCCccCCccccchhhhchhHHHHHHHhccCceecCCCccccCCCCC
Q 002311 742 FTSMKYLNYGAAVSEVEINLLTGETTIVQSDIIYDCGQSLNPAVDLGQIEGSFVQGIGFFMLEEYPTNSDGLVVSEGTWT 821 (937)
Q Consensus 742 ~~~~~~~~~ga~~aeVeVD~~TG~v~V~r~~~v~D~G~vINP~~v~gQi~Ggi~qGiG~AL~Ee~~~d~~G~~l~~~~~d 821 (937)
. .+|+||+|++|||||++||+++|+|+++++|||++|||++++|||+||++||||+||+|++.||++|+++|+||+|
T Consensus 623 ~---~~~~~ga~~~eVeVD~~TG~v~v~~~~~~~D~G~~iNP~~~~GQi~Gg~~qGiG~aL~E~~~~d~~G~~l~~~~~d 699 (770)
T TIGR02416 623 N---MTYPFGAYFCVVDIDVDTGVAKVRRFYALDDCGTRINPMIIEGQIHGGLTEGFAVAMGQEIRFDEQGNVLGASLMD 699 (770)
T ss_pred C---CCCCceeEEEEEEEECCCCeEEEEEEEEEEECCCccCHHHHHHHHHhhHHHHHHHHHhCcceECCCCCCCCCChhh
Confidence 2 2479999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCCeeEEEEecCCCCCCCCCCccccCCCCccchhhHHHHHHHHHHHHHHhhhcccccCCCCcccccCCCCCH
Q 002311 822 YKIPTLDTIPKQFNVEILNSGHHKKRVLSSKASGEPPLLLAVSVHCATRAAIREARKQLLSWSQLDQSDLTFDLEVPATV 901 (937)
Q Consensus 822 Y~iP~~~diP~~i~v~~~e~~~~p~gp~GaKGvGE~~~~~~~av~~Ai~nAi~~A~~~~~~~~~~~g~~~~~~~~lP~Tp 901 (937)
|++|++.|+|+ +++.++|++ +|.+|||+||+||+++++ +++||+|||+||++++ | ++++++|+||
T Consensus 700 Y~iPta~DvP~-~~~~~~e~~-~~~~p~GaKGvGE~~~~~---~~aAianAI~dA~~~~-------G---v~~~~lP~Tp 764 (770)
T TIGR02416 700 YFLPTAVETPH-WETDHTVTP-SPHHPIGAKGVGESPHVG---SVPCFSNAVVDAYAFL-------G---VGHIDMPHTA 764 (770)
T ss_pred CcCCchhcCCC-eEEEEeecC-CCCCCCCccccCCccccc---HHHHHHHHHHHHHhhc-------C---CCcccCCCCH
Confidence 99999999996 899999875 678999999999999998 5679999999997543 3 7889999999
Q ss_pred HHHHH
Q 002311 902 QVVKE 906 (937)
Q Consensus 902 e~v~~ 906 (937)
|+||+
T Consensus 765 e~v~~ 769 (770)
T TIGR02416 765 WRVWK 769 (770)
T ss_pred HHHhh
Confidence 99985
No 11
>PRK09970 xanthine dehydrogenase subunit XdhA; Provisional
Probab=100.00 E-value=7.1e-155 Score=1416.11 Aligned_cols=707 Identities=25% Similarity=0.332 Sum_probs=631.7
Q ss_pred CCCCCccCCcccccccccccccccCCCCCCcEEEEEEecCCCCeEEEEEecCCcC-CCCEEEEEeccCCCccCCCc---c
Q 002311 158 PVGEPIPKSGAALQASGEAIFVDDIPSPINCLYGAFVYSTKPLVRIRSVEIKSKS-LPGVSAFLSYKDIPEAGQNI---G 233 (937)
Q Consensus 158 ~vG~~~~R~d~~~kvtG~a~Y~~Di~~~pgmL~a~~vrSp~ahArI~sID~s~A~-~pGVvaV~T~~Dip~~g~~~---~ 233 (937)
+||++++|+|+.+||||+++|++|+. +|||||++++|||++||||+|||+++|+ +|||++|+|++|+| +.+. +
T Consensus 2 ~vG~~~~r~d~~~kvtG~~~Y~~D~~-~~gmL~a~~~rSp~aharI~siD~~~A~~~pGV~~Vvt~~D~p--~~~~~~~~ 78 (759)
T PRK09970 2 AIGKSIMRVDAIAKVTGRAKYTDDYV-MAGMLYAKYVRSPIAHGKVKSIDTEEARSLPGVEAVFTWEDVP--DIPFPTAG 78 (759)
T ss_pred CCCCCCcCcchHHhCcCCccccccCC-CCCCEEEEEEcCCCceEEEeeeeHHHHHhCCCcEEEEeHHHcC--Cccccccc
Confidence 58999999999999999999999997 7899999999999999999999999999 99999999999998 3322 1
Q ss_pred CC------CCCCCcccCCCCceeecCCcEEEEEeCCHHHHHHhcccceEEEccCCCCCCcCCHHHHhcCCCC--cccCCc
Q 002311 234 SR------TKFGPEPLFADELTHCAGQPIAFVVADTQKIANRAADLAVVDYDVGNLEPPILSVEEAVGRSSF--FEVPSF 305 (937)
Q Consensus 234 ~~------~~~~~~p~la~~~Vry~G~pVA~VvAet~~~A~~Aa~lI~Vey~~e~L~p~v~d~~~Al~~~a~--~~~~~~ 305 (937)
.. ....++|+|++++|||+|||||+|+|+|+++|++|+++|+||| |+| |+++|+++|++++++ |+..+|
T Consensus 79 ~~~~~~~~~~~~~~~~la~~~Vr~~G~~VAaVvA~~~~~A~~A~~~i~Vey--e~l-p~v~~~~~Al~~~a~~ih~~~~n 155 (759)
T PRK09970 79 HPWSLDPNHRDIADRALLTRHVRHHGDAVAAVVARDELTAEKALKLIKVEY--EEL-PVITDPEAALAEGAPPIHNGRGN 155 (759)
T ss_pred cccCCCCCCCCCCCccCcCCEEEEcCCeEEEEEeCCHHHHHHHhCCCcEeE--EeC-CccCCHHHHhCCCCCccCCCCCc
Confidence 00 0113788999999999999999999999999999999999999 899 999999999998874 432245
Q ss_pred cc---ccccCChhhhcccCCeEEEEEEEEecccccCCccCCceEEEECCCCcEEEEeCCCChHHHHHHHHHHhCCCCCcE
Q 002311 306 LY---PKSVGDISKGMNEADHKILSAEVKLGSQYYFYMETQTALAVPDEDNCLVVYSSIQCPEYAHATIARCLGIPEHNV 382 (937)
Q Consensus 306 ~~---~~~~Gd~e~af~~A~~vvve~~~~~~~~~h~~mEp~~avA~~~~dg~l~V~~stQ~p~~~r~~lA~~Lglp~~kV 382 (937)
+. ....||++++|++|+++ ||++|++++|+|++|||++|+|+|+++|+|+||+|||+||.+|..||++||||++||
T Consensus 156 i~~~~~~~~Gd~~~a~~~a~~v-ve~~y~~~~~~h~~mEp~~~iA~~~~~g~l~v~~stQ~p~~~~~~ia~~Lglp~~~V 234 (759)
T PRK09970 156 LLKQSTMSTGNVQQTIKAADYQ-VQGHYETPIVQHCHMENVTSYAYMEDDGRITIVSSTQIPHIVRRVVGQALGIPWGKV 234 (759)
T ss_pred eeeeeeeccCChhHhhccCCEE-EEEEEEECCEeEeccCCceEEEEECCCCCEEEEECCCcHHHHHHHHHHHhCCCHHHE
Confidence 53 35789999999999996 999999999999999999999999876899999999999999999999999999999
Q ss_pred EEEeccCCCCCCCCCcccchHHHHHHHHHHhC-CCCEEEEcChhhhhhhcCCCCceEEEEEEEECCCCcEEEEEEEEEee
Q 002311 383 RVITRRVGGGFGGKAIKAMPVATACALAAYKL-CRPVRIYVNRKTDMVMAGGRHPMKIEYNVGFKSNGKITALQLNILID 461 (937)
Q Consensus 383 rV~~~~vGGgFG~K~~~~~~~~~~aAlaA~~~-gRPVk~~~~R~E~~~~~~~R~~~~~~~k~g~d~dG~i~A~~~~~~~d 461 (937)
||+++++|||||+|.+. .. +..+|++|+++ ||||||+|||+|+|+++.+||++.+++|+|+|+||+|+|++++++.|
T Consensus 235 rV~~~~vGGgFG~K~~~-~~-~~~aa~la~~~~grPVk~~~~R~E~~~~~~~r~~~~~~~~~g~~~dG~i~a~~~~~~~d 312 (759)
T PRK09970 235 RVIKPYVGGGFGNKQDV-LE-EPLAAFLTSKVGGRPVKVSLSREECFLATRTRHAFTIDIKMGVNRDGTLKGYSLDVLSN 312 (759)
T ss_pred EEEeCCCCCCcCccccc-CH-HHHHHHHHHHhcCCCeEEeechhHhhhcCCCCCceEEEEEEEECCCCcEEEEEEEEeec
Confidence 99999999999999864 33 45667788888 99999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCC-chhhhhhccCCCCccccEEEEEEEeecCCCCCCccCCCChhHHHHHHHHHHHHHHHHcCCCHHHHHHhhc
Q 002311 462 AGQYPDVSP-NIPAYMIGALKKYDWGALHFDIKVCRTNLPSRTAMRAPGEVQGSFIAEAVIEHVASTLSMEVDFVRSINL 540 (937)
Q Consensus 462 ~Gay~~~~~-~~~~~~~~~~~~Y~ipn~~~~~~~v~TN~~p~ga~RG~G~pq~~fa~E~~mD~lA~~lG~DP~e~R~kNl 540 (937)
+|+|.+++. ++........++|+|||++++++.|+||++|+|+|||||.||++|++|++||++|++|||||+|||+||+
T Consensus 313 ~Gay~~~~~~~~~~~~~~~~~~Y~ipn~~~~~~~v~TN~~~~ga~Rg~G~~q~~fa~E~~mD~~A~~lg~DP~e~R~~N~ 392 (759)
T PRK09970 313 TGAYASHGHSIASAGGNKVAYLYPRCAYKYSSKTVYTNLPSAGAMRGYGAPQVVFAVESMLDDAATALGIDPVEFRLRNA 392 (759)
T ss_pred cccCCCcchHHHHHHHhhcCCCccCceEEEEEEEEECCCCCCCCCCCCChhHHHHHHHHHHHHHHHHhCcCHHHHHHHhC
Confidence 999998765 3334444667999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCccccccCCC-CccccC-CHHHHHHHHHHhcCChhhHHHHHHHhhccCCcceeeeecceEeecCCC-----CCceE
Q 002311 541 HTHNSLNLFYESSA-GELEEY-TIPLIWDRLAVSSSFNQRTEVIKEFNRSNLWRKKGISRVPIVYDVPLM-----STPGK 613 (937)
Q Consensus 541 ~~~~~~~~~~~~~~-g~~~~~-~~~~~l~~~~~~~~~~~r~~~~~~~~~~~~~~~~Gig~a~~~~~~g~~-----~~~a~ 613 (937)
+++++. +++ |..+++ ++++||+++++.++|+++++.... ..+|++||+|+++..++++.. ++.+.
T Consensus 393 ~~~g~~-----~~~~g~~~~s~~~~~~l~~~~~~~~~~~~~~~~~~---~~~~~~rGiG~a~~~~~~~~~~~~~~~~~a~ 464 (759)
T PRK09970 393 AREGDA-----NPLSGKRIYSAGLPECLEKGRKIFEWDKRRAECKN---QQGNLRRGVGVACFSYTSGTWPVGLEIAGAR 464 (759)
T ss_pred CCCCCc-----CCCCCeeecCCCHHHHHHHHHHhcCchhhhHhHhh---hcCCceEEEEEEEEEEeecCCCCCCCcceEE
Confidence 987643 343 666665 999999999999999887654321 234578899999888876543 47899
Q ss_pred EEEccCCcEEEEeccccccccHHHHHHHHHHHHhcccccCCCCCCCCcEEEecC-CCccccCCCCCcccchhhhhHHHHH
Q 002311 614 VSILSDGSVVVEVGGIELGQGLWTKVKQMAAFALSSIQCGGMGDLLETVRVIQA-DTLSVIQGGLTAGSTKSEASCQAVR 692 (937)
Q Consensus 614 v~l~~DG~v~v~~g~~e~GqG~~T~~aqiaAe~Lgi~~~~~~~~~~~~I~v~~~-dT~~~p~~~~t~aSr~t~~~g~Av~ 692 (937)
|+|++||+|+|++|.+|||||++|+++||+||+||+ |+++|+|..+ ||+.+|++++|+|||+|+++|.|++
T Consensus 465 v~i~~dGsv~v~~g~~e~GQG~~T~~aQiaAe~LGi--------~~~~V~v~~~~dT~~~p~~~gt~aSr~t~~~g~Av~ 536 (759)
T PRK09970 465 LLMNQDGTVQVQSGATEIGQGSDTVFSQMVAETVGI--------PVSDVRVISTQDTDVTPFDPGAYASRQSYVAGPAIR 536 (759)
T ss_pred EEEccCceEEEEECCCCcCCCHHHHHHHHHHHHhCC--------CHHhEEEEccCCCCCCCCCCCCchhhhHHHHHHHHH
Confidence 999999999999999999999999999999999999 9999999988 9999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhc--------c----------CccCHHHHHHHHHhc---CceeEEEEEecCCCCccccccEE
Q 002311 693 NCCKILVERLTPLRERLQAQ--------M----------GSVKWETLIQQAYLQ---SVSLSASSLYLPDFTSMKYLNYG 751 (937)
Q Consensus 693 ~Aa~~l~~~l~~~aa~~~~~--------~----------~~~~~~~~~~~~~~~---~~~l~~~~~~~~~~~~~~~~~~g 751 (937)
+||++||+||+++++++++. + ..++|.+++..++.. ...+...+.|.... .+|+|+
T Consensus 537 ~Aa~~lr~~l~~~aa~~l~~~~~~l~~~~G~v~~~~~~~~~~~~~~la~~a~~~~~~~~~~~~~~~~~~~~---~~~~~~ 613 (759)
T PRK09970 537 KAALELKEKILAHAAVMLHQSAMNLDIIDGHIVVKRPGEPLMSLEELAMDAYYHPERGGQITAESSIKTTT---NPPAFG 613 (759)
T ss_pred HHHHHHHHHHHHHHHHHhCCChHHEEEECCEEEECCCCCccccHHHHHHHhhccccCCCceeEEEEecCCC---CCCceE
Confidence 99999999999998887642 1 137899998765432 23466677776542 247999
Q ss_pred EEEEEEEEECCCCcEEEEEEEEEecCCccCCccccchhhhchhHHHHHHHhccCceecCC-CccccCCCCCCCCCCCCCC
Q 002311 752 AAVSEVEINLLTGETTIVQSDIIYDCGQSLNPAVDLGQIEGSFVQGIGFFMLEEYPTNSD-GLVVSEGTWTYKIPTLDTI 830 (937)
Q Consensus 752 a~~aeVeVD~~TG~v~V~r~~~v~D~G~vINP~~v~gQi~Ggi~qGiG~AL~Ee~~~d~~-G~~l~~~~~dY~iP~~~di 830 (937)
||+||||||++||+++|+|+++++|||++|||.+++||||||++||||+||+|++.||++ |+++++||+||++|++.|+
T Consensus 614 a~~aeVeVD~~TG~v~v~~~~~~~D~G~~iNP~~v~gQi~Gg~~qGiG~aL~E~~~~d~~~G~~~~~~~~dY~ip~~~d~ 693 (759)
T PRK09970 614 CTFVDVEVDIALCKVTINRILNVHDSGHILNPLLAEGQVHGGMGMGIGWALFEEMIIDEKTGVVRNPNLLDYKLPTMMDL 693 (759)
T ss_pred EEEEEEEEeCCCCeEEEEEEEEEEEcCcccCHHHHHHHHHhHHHHHHHHHhcceeEEcCCCCeECCCChhhccCCCcccC
Confidence 999999999999999999999999999999999999999999999999999999999985 9999999999999999999
Q ss_pred CCeeEEEEecCCCCCCCCCCccccCCCCccchhhHHHHHHHHHHHHHHhhhcccccCCCCcccccCCCCCHHHHHHhcCC
Q 002311 831 PKQFNVEILNSGHHKKRVLSSKASGEPPLLLAVSVHCATRAAIREARKQLLSWSQLDQSDLTFDLEVPATVQVVKELCGP 910 (937)
Q Consensus 831 P~~i~v~~~e~~~~p~gp~GaKGvGE~~~~~~~av~~Ai~nAi~~A~~~~~~~~~~~g~~~~~~~~lP~Tpe~v~~a~~~ 910 (937)
|+ |+++++|++ +|.+|||+||+||+++++ +++||+|||++|+| ++++++|+|||+||++|+.
T Consensus 694 P~-i~v~~ve~~-~~~~p~GaKgvGE~~~~~---~~~AIanAi~~A~G-------------~r~~~lP~tpe~v~~al~~ 755 (759)
T PRK09970 694 PQ-LESAFVEIY-EPQSAYGHKSLGEPPIIS---PAPAIRNAVLMATG-------------VAINTLPMTPQRLFEEFKE 755 (759)
T ss_pred CC-eEEEEEecC-CCCCCCCCcccCCCcccc---hHHHHHHHHHHhhC-------------CCcCCCCCCHHHHHHHHHh
Confidence 95 999999975 678999999999999986 77899999999995 6789999999999999864
No 12
>TIGR03196 pucD xanthine dehydrogenase D subunit. This gene has been characterized in B. subtilis as the molybdopterin binding-subunit of xanthine dehydrogenase (pucD), acting in conjunction with pucC, the FAD-binding subunit and pucE, the FeS-binding subunit. The more common XDH complex (GenProp0640) includes the xdhB gene which is related to pucD. It appears that most of the relatives of pucD outside of this narrow clade are involved in other processes as they are found in unrelated genomic contexts, contain the more common XDH complex and/or do not appear to process purines to allantoin.
Probab=100.00 E-value=5.7e-153 Score=1395.79 Aligned_cols=699 Identities=23% Similarity=0.299 Sum_probs=613.4
Q ss_pred CCCCCcc-CCcccccccccccccccCCCCCCcEEEEEEecCCCCeEEEEEecCCcC-CCCEEEEEeccCCCccCCC-ccC
Q 002311 158 PVGEPIP-KSGAALQASGEAIFVDDIPSPINCLYGAFVYSTKPLVRIRSVEIKSKS-LPGVSAFLSYKDIPEAGQN-IGS 234 (937)
Q Consensus 158 ~vG~~~~-R~d~~~kvtG~a~Y~~Di~~~pgmL~a~~vrSp~ahArI~sID~s~A~-~pGVvaV~T~~Dip~~g~~-~~~ 234 (937)
+||++++ |+|+++||||+++|++|+. +|||||++++|||++||+|++||+|+|+ +|||++|+|++|+| +.+ .+.
T Consensus 2 ~iG~~~~~R~d~~~kvtG~a~Y~~Di~-~pgmL~a~~vrSp~aha~I~siD~s~A~a~pGV~~V~t~~D~p--~~~~~g~ 78 (768)
T TIGR03196 2 GIGKPSRVRPDGPDKVTGEFKYMGDLR-FPGMLHAKTLRSAHAHAEIRRVCTDAAEKLEGVQAMVTAADVP--GLARFGI 78 (768)
T ss_pred cCCCcCCcCcchHhhCcccccccccCC-CCCcEEEEEEecCCCcEEEeeccHHHHHhCCCcEEEEehHHCC--CCCCCCc
Confidence 4899999 9999999999999999997 7899999999999999999999999999 99999999999998 322 221
Q ss_pred CCCCCCcccCCCCceeecCCcEEEEEeCCHHHHHHhcccceEEEccCCCCCCcCCHHHHhcCCCC--cccCCccc---cc
Q 002311 235 RTKFGPEPLFADELTHCAGQPIAFVVADTQKIANRAADLAVVDYDVGNLEPPILSVEEAVGRSSF--FEVPSFLY---PK 309 (937)
Q Consensus 235 ~~~~~~~p~la~~~Vry~G~pVA~VvAet~~~A~~Aa~lI~Vey~~e~L~p~v~d~~~Al~~~a~--~~~~~~~~---~~ 309 (937)
...++|+|++++|||+|||||+|||+|+++|++|+++|+||| |+| |+++|+++|++++++ |+ ++|+. ..
T Consensus 79 --~~~~~~~la~~~Vr~~G~~VA~VvA~t~~~A~~A~~~v~Vey--e~l-p~v~d~~~a~~~~a~~i~~-~~ni~~~~~~ 152 (768)
T TIGR03196 79 --IIADQPVFAADEIRYAGDAIAAVAAEDEEIAEAALAAIEVDY--EEL-APMDDPDKALQPDAEPLHE-AGNILHEAEF 152 (768)
T ss_pred --cCCCcccccCCEEEEcCCeEEEEEECCHHHHHHHhccCceEE--EeC-CCcCCHHHHhcCCCCeECC-CCcCcceeee
Confidence 235889999999999999999999999999999999999999 889 899999999988763 43 35553 35
Q ss_pred ccCChhhhcccCCeEEEEEEEEecccccCCccCCceEEEECCCCcEEEEeCCCChHHHHHHHHHHhCCCCCcEEEEeccC
Q 002311 310 SVGDISKGMNEADHKILSAEVKLGSQYYFYMETQTALAVPDEDNCLVVYSSIQCPEYAHATIARCLGIPEHNVRVITRRV 389 (937)
Q Consensus 310 ~~Gd~e~af~~A~~vvve~~~~~~~~~h~~mEp~~avA~~~~dg~l~V~~stQ~p~~~r~~lA~~Lglp~~kVrV~~~~v 389 (937)
..||++++|++|+++ ||++|++++++|+||||++|+|+|+++|+|+||+|||+|+.+|..||++||||++||||+++++
T Consensus 153 ~~Gd~~~af~~a~~v-ve~~y~~~~~~h~~mEp~~~~A~~~~~g~l~v~~stQ~p~~~r~~lA~~Lglp~~~VrV~~~~v 231 (768)
T TIGR03196 153 RHGDPDEGFAAGDTV-FEDQYELGMQDHAFLAPEAALAMPAADGGFDLRAATQHGHKDREQIAACFDIPEEKIRITLAGM 231 (768)
T ss_pred ccCCHhHHhccCCEE-EEEEEEeCCeeeeecCCceEEEEEcCCCCEEEEECCCchHHHHHHHHHHhCCCHHHEEEEeCCC
Confidence 789999999999996 9999999999999999999999998777899999999999999999999999999999999999
Q ss_pred CCCCCCCCcccchHHHHHHHHHHhCCCCEEEEcChhhhhhhcCCCCceEEEEEEEECCCCcEEEEEEEEEeeCCCCCCCC
Q 002311 390 GGGFGGKAIKAMPVATACALAAYKLCRPVRIYVNRKTDMVMAGGRHPMKIEYNVGFKSNGKITALQLNILIDAGQYPDVS 469 (937)
Q Consensus 390 GGgFG~K~~~~~~~~~~aAlaA~~~gRPVk~~~~R~E~~~~~~~R~~~~~~~k~g~d~dG~i~A~~~~~~~d~Gay~~~~ 469 (937)
|||||+|.... .++.||++|+++||||||+|||+|+|+++.+||++.+++|+|+|+||+|+|++++++.|+|+|.+++
T Consensus 232 GGgFG~K~~~~--~~~~aa~~A~~~gRPVk~~~sReE~~~~~~~r~~~~~~~k~g~~~dG~i~a~~~~~~~d~Gay~~~~ 309 (768)
T TIGR03196 232 GGAFGGKDDLN--IQIHAALLALASGLPVKIAQDRKESFLGGIHRHPAKITFKHGADADGNLLAHDAKIVADGGAYASLG 309 (768)
T ss_pred CCccCCccccc--HHHHHHHHHHHhCCCEEEEechHHhhhcCCCCCCeEEEEEEEECCCCcEEEEEEEEEecccccCCcc
Confidence 99999998643 3566799999999999999999999999999999999999999999999999999999999999876
Q ss_pred C-chhhhhhccCCCCccccEEEEEEEeecCCCCCCccCCCChhHHHHHHHHHHHHHHHHcCCCHHHHHHhhcCCCCCccc
Q 002311 470 P-NIPAYMIGALKKYDWGALHFDIKVCRTNLPSRTAMRAPGEVQGSFIAEAVIEHVASTLSMEVDFVRSINLHTHNSLNL 548 (937)
Q Consensus 470 ~-~~~~~~~~~~~~Y~ipn~~~~~~~v~TN~~p~ga~RG~G~pq~~fa~E~~mD~lA~~lG~DP~e~R~kNl~~~~~~~~ 548 (937)
. ........+.++|+|||++++++.|+||++|+|+|||||.||+.||+|++||++|++|||||+|||+||++++++. +
T Consensus 310 ~~v~~~~~~~~~~~Y~ipn~~~~~~~v~TN~~~~ga~Rg~G~~q~~fa~E~~mDelA~~lg~DP~e~R~~Nl~~~g~~-~ 388 (768)
T TIGR03196 310 PAVLAFAVEHAAGPYRIPNAHLEGISVFTNNGPAGAFRGFGGNQITFAHEAHLDRLADALGIDPLDLRRKNARKPGDL-G 388 (768)
T ss_pred HHHHHHHHHhcCCCcccceEEEEEEEEEcCCCCCCccCCCChhHHHHHHHHHHHHHHHHhCcCHHHHHHHhCCCCCCc-C
Confidence 5 3334444667999999999999999999999999999999999999999999999999999999999999987653 2
Q ss_pred cccCCCCcccc--CCHHHHHHHHHHhcCCh-----hhHHHHHHHh------hccCCcceeeeecceEeecCCC-----C-
Q 002311 549 FYESSAGELEE--YTIPLIWDRLAVSSSFN-----QRTEVIKEFN------RSNLWRKKGISRVPIVYDVPLM-----S- 609 (937)
Q Consensus 549 ~~~~~~g~~~~--~~~~~~l~~~~~~~~~~-----~r~~~~~~~~------~~~~~~~~Gig~a~~~~~~g~~-----~- 609 (937)
|| |+++. +++++||++++++++|+ ++.....+++ +.+++++||+|++++.++++.+ +
T Consensus 389 ~~----g~~~~~~~~~~~~l~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~g~~~rGiG~a~~~~~~~~~~~~~~~~ 464 (768)
T TIGR03196 389 PL----EHRIAAPDGAAEVIEAIASRPLPKAPILKKANRAVTALPGGRPAAAECGRLQRGTGAAIAMHGGGFGEGMDDAA 464 (768)
T ss_pred CC----CcccCCcCCHHHHHHHHHhhccccchhhhhhhhhhhhhhhhhhhhhhcCCeeEEEEEEEEEecccCCCCccccC
Confidence 33 44443 48999999999999998 3222111111 1223456899999888776543 2
Q ss_pred -CceEEEEccCCc--EEEEeccccccccHHHHHHHHHHHHhcccccCCCCCCCCcEEEecCCCccccCCCCCcccchhhh
Q 002311 610 -TPGKVSILSDGS--VVVEVGGIELGQGLWTKVKQMAAFALSSIQCGGMGDLLETVRVIQADTLSVIQGGLTAGSTKSEA 686 (937)
Q Consensus 610 -~~a~v~l~~DG~--v~v~~g~~e~GqG~~T~~aqiaAe~Lgi~~~~~~~~~~~~I~v~~~dT~~~p~~~~t~aSr~t~~ 686 (937)
+.+.|+|++||+ |+|.+|++|||||++|+++|||||+||| |+|+|+|..+||+.+|++++|+|||+|++
T Consensus 465 ~~~a~v~l~~dGsv~v~v~~g~~d~GQG~~T~~aQiaAe~LGi--------p~e~V~v~~~DT~~~p~~~gt~~Sr~t~~ 536 (768)
T TIGR03196 465 VAGARLELAEDGTVKIRAHFACAECGQGFLAAAEQIAMEELGC--------AAEDISIAIADTAKGPKAGSSSASRGTSM 536 (768)
T ss_pred CccEEEEEeCCCCeEEEEEECCCCcCCCHHHHHHHHHHHHhCC--------CHHHEEEecCCCCCCCCCCCCchhhhhHh
Confidence 378999999996 8999999999999999999999999999 99999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhc--------cC------------------ccCHHHHHHHHHhcCceeEEEEEe-c
Q 002311 687 SCQAVRNCCKILVERLTPLRERLQAQ--------MG------------------SVKWETLIQQAYLQSVSLSASSLY-L 739 (937)
Q Consensus 687 ~g~Av~~Aa~~l~~~l~~~aa~~~~~--------~~------------------~~~~~~~~~~~~~~~~~l~~~~~~-~ 739 (937)
+|+||++||++||+||+++++++++. ++ .++|.+++.. ..+.+.+.| .
T Consensus 537 ~G~Av~~Aa~~l~~kl~~~aa~~l~~~~~~~~~~~g~~~~~~~~v~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~ 611 (768)
T TIGR03196 537 SGGAIQGACAAFAAQLKARAAETAGLPAEVVEAPAENLIPGAAEIVGDKNEAALRVPLAEAAAD-----GPIAAETAFHD 611 (768)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCChhhEEEeCCeeeecccceeeecCCCcceEEHHHHhcc-----ccceeeecccc
Confidence 99999999999999999998776541 11 2456666521 112232322 1
Q ss_pred CC----------CCccccccEEEEEEEEEEECCCCcEEEEEEEEEecCCccCCccccchhhhchhHHHHHHHhccCceec
Q 002311 740 PD----------FTSMKYLNYGAAVSEVEINLLTGETTIVQSDIIYDCGQSLNPAVDLGQIEGSFVQGIGFFMLEEYPTN 809 (937)
Q Consensus 740 ~~----------~~~~~~~~~ga~~aeVeVD~~TG~v~V~r~~~v~D~G~vINP~~v~gQi~Ggi~qGiG~AL~Ee~~~d 809 (937)
.+ +.++.+|+|++|++|||||++||+++|+|+++++|||++|||.+++|||+||++||||+||+|++.||
T Consensus 612 ~~~~~~~~~~~~~~~~~~~~~ga~~~eveVd~~tG~v~v~~~~~~~D~G~~iNp~~~~gQi~Gg~~~Gig~al~E~~~~~ 691 (768)
T TIGR03196 612 FPTSALDADVGQGDGHFAFAAAAAAAEVDVDLDLGDVKLIDCAHAIAAGPVLNPLALRGQIEGGAAMALGLALMEEAKMT 691 (768)
T ss_pred CCCcccccccccCCCcccccceEEEEEEEEECCCCcEEEEEEEEEEECCCccCHHHHHHHHHHHHHHHHHHHHhCCeEec
Confidence 10 11234678999999999999999999999999999999999999999999999999999999999996
Q ss_pred CCCccccCCCCCCCCCCCCCCCCeeEEEEecCCCCCCCCCCccccCCCCccchhhHHHHHHHHHHHHHHhhhcccccCCC
Q 002311 810 SDGLVVSEGTWTYKIPTLDTIPKQFNVEILNSGHHKKRVLSSKASGEPPLLLAVSVHCATRAAIREARKQLLSWSQLDQS 889 (937)
Q Consensus 810 ~~G~~l~~~~~dY~iP~~~diP~~i~v~~~e~~~~p~gp~GaKGvGE~~~~~~~av~~Ai~nAi~~A~~~~~~~~~~~g~ 889 (937)
+|+++|+||+||++|++.|+|+ +++.++|++ +|.+|||+||+||+++++ +++||+|||++|+|
T Consensus 692 -~G~~~~~~~~~Y~~p~~~d~P~-~~~~~~~~~-~~~~p~G~kG~GE~~~~~---~~~AianAi~~A~G----------- 754 (768)
T TIGR03196 692 -DGRVAAENFDDYLIPGIADVPD-LDFIAIEDL-MKDAPYGPKGVGEAGTCA---ATPAIIAAIHDAVG----------- 754 (768)
T ss_pred -CCeECCCCcccccCCChhhCCC-eEEEEEeCC-CCCCCCCCccCcCccccc---hHHHHHHHHHHHhC-----------
Confidence 7999999999999999999996 999999864 678999999999999997 67799999999995
Q ss_pred CcccccCCCCCHHHHH
Q 002311 890 DLTFDLEVPATVQVVK 905 (937)
Q Consensus 890 ~~~~~~~lP~Tpe~v~ 905 (937)
+++++||+|||||+
T Consensus 755 --~r~~~lP~tpe~v~ 768 (768)
T TIGR03196 755 --CDINKLPIRPEDLL 768 (768)
T ss_pred --cCcccCCCChhhCC
Confidence 67899999999985
No 13
>COG4631 XdhB Xanthine dehydrogenase, molybdopterin-binding subunit B [Nucleotide transport and metabolism]
Probab=100.00 E-value=1.6e-140 Score=1150.69 Aligned_cols=724 Identities=34% Similarity=0.516 Sum_probs=666.7
Q ss_pred CCCCCCCccCCcccccccccccccccCCCCCCcEEEEEEecCCCCeEEEEEecCCcC-CCCEEEEEeccCCCccCCCccC
Q 002311 156 YFPVGEPIPKSGAALQASGEAIFVDDIPSPINCLYGAFVYSTKPLVRIRSVEIKSKS-LPGVSAFLSYKDIPEAGQNIGS 234 (937)
Q Consensus 156 ~~~vG~~~~R~d~~~kvtG~a~Y~~Di~~~pgmL~a~~vrSp~ahArI~sID~s~A~-~pGVvaV~T~~Dip~~g~~~~~ 234 (937)
...||.+.+.-.+..+|+|.+.|+||++.++|.||+++-.|+.+||||+++|+++.+ .|||+.|+|++|+| |.|..
T Consensus 16 ~~~v~~~~~HeSAhkHV~GtA~YiDD~pepag~LH~~~gls~~aHAri~~mDl~~v~a~PGVv~vlta~DvP--GenDi- 92 (781)
T COG4631 16 RGGVGTSLRHESAHKHVTGTAVYIDDIPEPAGTLHGALGLSERAHARITRMDLSAVRAAPGVVDVLTAADVP--GENDI- 92 (781)
T ss_pred CCcccccccccchhhcccceeEEecCCCCcccchhhhccccccchheeeecchHHhhcCCCeEEEEEecCCC--CCCCC-
Confidence 346899999999999999999999999888999999999999999999999999999 99999999999999 76642
Q ss_pred CCCCCCcccCCCCceeecCCcEEEEEeCCHHHHHHhcccceEEEccCCCCCCcCCHHHHhcCCCCcccCCcccccccCCh
Q 002311 235 RTKFGPEPLFADELTHCAGQPIAFVVADTQKIANRAADLAVVDYDVGNLEPPILSVEEAVGRSSFFEVPSFLYPKSVGDI 314 (937)
Q Consensus 235 ~~~~~~~p~la~~~Vry~G~pVA~VvAet~~~A~~Aa~lI~Vey~~e~L~p~v~d~~~Al~~~a~~~~~~~~~~~~~Gd~ 314 (937)
.+...|+|+|++++|.|+||||.+|+|+|+++|++|+.+.+||| |+| |+++|+.+|+..+.+.. ++ .+.++||.
T Consensus 93 sp~~hddpl~a~gkVef~GQ~vfaV~A~s~e~ARraA~~a~ieY--e~l-p~~~di~~a~a~~~~v~-~p--~~l~rGD~ 166 (781)
T COG4631 93 SPVKHDDPLLADGKVEFHGQPVFAVIAESREAARRAARLAKIEY--EDL-PPVTDIDEAIAAGRLVT-PP--LTLKRGDA 166 (781)
T ss_pred CcccCCCccccCceEEEccceEEEEeehhHHHHHHHHHhhhccc--ccC-CccCCHHHHhhcccccC-Cc--hhhcccch
Confidence 22356899999999999999999999999999999999999999 999 99999999998875433 22 25789999
Q ss_pred hhhcccCCeEEEEEEEEecccccCCccCCceEEEECCCCcEEEEeCCCChHHHHHHHHHHhCCCCCcEEEEeccCCCCCC
Q 002311 315 SKGMNEADHKILSAEVKLGSQYYFYMETQTALAVPDEDNCLVVYSSIQCPEYAHATIARCLGIPEHNVRVITRRVGGGFG 394 (937)
Q Consensus 315 e~af~~A~~vvve~~~~~~~~~h~~mEp~~avA~~~~dg~l~V~~stQ~p~~~r~~lA~~Lglp~~kVrV~~~~vGGgFG 394 (937)
+.+|+.|.+. ++++++++.|+|+|||.+.++|.+++|+.++||+|||.|..+|..+|.+||+|.+.|.|.+.++|||||
T Consensus 167 ~a~~~~Ap~r-~~G~~~iGGQehFYLEgqia~a~p~Ed~~v~v~~STQhPtE~Q~~vahvLGvpsn~VtV~~rRMGGGFG 245 (781)
T COG4631 167 AAALAAAPHR-LQGEMRIGGQEHFYLEGQIALAVPGEDGDVTVWSSTQHPTEVQHLVAHVLGVPSNAVTVEVRRMGGGFG 245 (781)
T ss_pred hhhhhhCchh-heeeEEEcCeeeEEEeeeeeEeccCCCCCEEEEecCCCcHHHHHHHHHHhCCCcceEEEEEEeecCCcC
Confidence 9999999997 999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcccchHHHHHHHHHHhCCCCEEEEcChhhhhhhcCCCCceEEEEEEEECCCCcEEEEEEEEEeeCCCCCCCCC-chh
Q 002311 395 GKAIKAMPVATACALAAYKLCRPVRIYVNRKTDMVMAGGRHPMKIEYNVGFKSNGKITALQLNILIDAGQYPDVSP-NIP 473 (937)
Q Consensus 395 ~K~~~~~~~~~~aAlaA~~~gRPVk~~~~R~E~~~~~~~R~~~~~~~k~g~d~dG~i~A~~~~~~~d~Gay~~~~~-~~~ 473 (937)
||++....++++||++|+|++||||+..+|.|||.+++|||++...|++|||.||+|++++..+..++|...++|. ++.
T Consensus 246 GKEtQ~~~fAa~aA~aA~k~~r~vk~RpdRdeDm~~TGKRHdF~v~y~vGfDdeGri~~v~~~~aarcGfS~DLSgpV~d 325 (781)
T COG4631 246 GKETQANQFAALAALAAKKTGRPVKIRPDRDEDMTATGKRHDFHVDYEVGFDDEGRILGVDATLAARCGFSADLSGPVTD 325 (781)
T ss_pred cccccchHHHHHHHHHHHHhCCceeecCCcchhhhhccCcCceEEEeeeccCCCCcEEEeeeehhhccCcccccCccchh
Confidence 9998888899999999999999999999999999999999999999999999999999999999999999999876 888
Q ss_pred hhhhccCCCCccccEEEEEEEeecCCCCCCccCCCChhHHHHHHHHHHHHHHHHcCCCHHHHHHhhcCCCCCccccccCC
Q 002311 474 AYMIGALKKYDWGALHFDIKVCRTNLPSRTAMRAPGEVQGSFIAEAVIEHVASTLSMEVDFVRSINLHTHNSLNLFYESS 553 (937)
Q Consensus 474 ~~~~~~~~~Y~ipn~~~~~~~v~TN~~p~ga~RG~G~pq~~fa~E~~mD~lA~~lG~DP~e~R~kNl~~~~~~~~~~~~~ 553 (937)
+++.++.+.|.+|++++.++.++||+.++++|||||.||+++++|++||++|..||+||+|+|++|++.++.. ..+|
T Consensus 326 RAlfH~DNaYf~p~v~~~s~~~kTntvSnTAfRGFGGPQGm~~~Eriid~vA~alGkdpleiRk~NfYg~~~~---n~Tp 402 (781)
T COG4631 326 RALFHADNAYFYPHVHILSRPLKTNTVSNTAFRGFGGPQGMLGIERIIDEVAYALGKDPLEIRKLNFYGKDGR---NVTP 402 (781)
T ss_pred hheeccccceeccceeeecceeeccccccccccccCCcchhhHHHHHHHHHHHHhCCCHHHHHhhhccCCCCC---ccCc
Confidence 9999999999999999999999999999999999999999999999999999999999999999999986542 1234
Q ss_pred CCccc-cCCHHHHHHHHHHhcCChhhHHHHHHHhhccCCcceeeeecceEeecCCC-----CCceEEEEccCCcEEEEec
Q 002311 554 AGELE-EYTIPLIWDRLAVSSSFNQRTEVIKEFNRSNLWRKKGISRVPIVYDVPLM-----STPGKVSILSDGSVVVEVG 627 (937)
Q Consensus 554 ~g~~~-~~~~~~~l~~~~~~~~~~~r~~~~~~~~~~~~~~~~Gig~a~~~~~~g~~-----~~~a~v~l~~DG~v~v~~g 627 (937)
.++.. +.-+.++++.+...++|..|++++.+||..++..+|||++.|.++|++++ +..+.|.|+.||||.+++|
T Consensus 403 YhQ~Vednii~ri~~ELeaSsdyaaRr~~i~aFNa~spv~krGlAlTPVKFGISFt~t~~NQAGALVHvY~DGSi~lNHG 482 (781)
T COG4631 403 YHQTVEDNIIARIVDELEASSDYAARREAIRAFNAASPVIKRGLALTPVKFGISFTATHYNQAGALVHVYTDGSIHLNHG 482 (781)
T ss_pred cccchHHhHHHHHHHHHHhcchHHHHHHHHHHhhccChhhhccccccceeeeEEEeeeeeccCceEEEEeccCeEEEcCC
Confidence 45553 34788999999999999999999999999999999999999999999864 5899999999999999999
Q ss_pred cccccccHHHHHHHHHHHHhcccccCCCCCCCCcEEEecCCCccccCCCCCcccchhhhhHHHHHHHHHHHHHHHHHHHH
Q 002311 628 GIELGQGLWTKVKQMAAFALSSIQCGGMGDLLETVRVIQADTLSVIQGGLTAGSTKSEASCQAVRNCCKILVERLTPLRE 707 (937)
Q Consensus 628 ~~e~GqG~~T~~aqiaAe~Lgi~~~~~~~~~~~~I~v~~~dT~~~p~~~~t~aSr~t~~~g~Av~~Aa~~l~~~l~~~aa 707 (937)
++|||||+.|+++|++|++|+| ++++|+|..++|+.+||...|.+|.++.++|.|+++||+++|+||..+|+
T Consensus 483 GTEMGQGL~tKvaQVvA~~fqv--------d~~rVkitaT~T~KVpNTSaTAASSGsDLNGmAa~dAa~qIk~RLv~fAA 554 (781)
T COG4631 483 GTEMGQGLYTKVAQVVAEEFQV--------DIDRVKITATTTDKVPNTSATAASSGSDLNGMAAQDAARQIKERLVAFAA 554 (781)
T ss_pred CcccccchhHHHHHHHHHHhCc--------ccceEEEeccccCCCCCCccccccccCCcccHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999 99999999999999999999999999999999999999999999999998
Q ss_pred HHHhc---------------cCccCHHHHHHHHHhcCceeEEEEEecC----------CCCccccccEEEEEEEEEEECC
Q 002311 708 RLQAQ---------------MGSVKWETLIQQAYLQSVSLSASSLYLP----------DFTSMKYLNYGAAVSEVEINLL 762 (937)
Q Consensus 708 ~~~~~---------------~~~~~~~~~~~~~~~~~~~l~~~~~~~~----------~~~~~~~~~~ga~~aeVeVD~~ 762 (937)
+-+.. ...++|.+++.++|...+.|++.++|.. .+.||.||+|||.+.||+||++
T Consensus 555 ~~~~V~~~~v~F~~n~vrig~~~~~F~~lv~~AY~arvqLsaaGFY~TPkihwdra~~~G~PFyYFaYGAacSEV~vDtl 634 (781)
T COG4631 555 EHWGVPEEDVAFLPNRVRIGGQELAFADLVKQAYFARVQLSAAGFYKTPKIHWDRAAGRGRPFYYFAYGAACSEVSVDTL 634 (781)
T ss_pred HhcCCCHHHeEecCCeeEEcceecCHHHHHHHHhheeeeeeccccccCCccccchhhcCCCceEEEeecceeeeEEEecc
Confidence 76542 1247899999999999999999999865 3578999999999999999999
Q ss_pred CCcEEEEEEEEEecCCccCCccccchhhhchhHHHHHHHhccCceecCCCccccCCCCCCCCCCCCCCCCeeEEEEecCC
Q 002311 763 TGETTIVQSDIIYDCGQSLNPAVDLGQIEGSFVQGIGFFMLEEYPTNSDGLVVSEGTWTYKIPTLDTIPKQFNVEILNSG 842 (937)
Q Consensus 763 TG~v~V~r~~~v~D~G~vINP~~v~gQi~Ggi~qGiG~AL~Ee~~~d~~G~~l~~~~~dY~iP~~~diP~~i~v~~~e~~ 842 (937)
||+.+++|.++.||+|++|||.+..||||||++||+||..+||+.||+.|++.+....+||||.+.|+|++|+|.+.+.+
T Consensus 635 TGey~~~R~DiLHDvG~SLNpaiDlGQiEGgFvQGmGWLTtEeL~wd~kGRlrThapSTYKiP~~sdrP~~f~V~L~~~~ 714 (781)
T COG4631 635 TGEYKVERTDILHDVGRSLNPAIDLGQIEGGFVQGMGWLTTEELWWDEKGRLRTHAPSTYKIPLASDRPKIFNVRLAEWS 714 (781)
T ss_pred cceEEEEeehhhhhhhhhcccccccccccchhcccccccchhhheeccCCCeeecCCccccCcccccCchheeeehhccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999998764
Q ss_pred CC-CCCCCCccccCCCCccchhhHHHHHHHHHHHHHHhhhcccccCCCCcccccCCCCCHHHHHHhcCC
Q 002311 843 HH-KKRVLSSKASGEPPLLLAVSVHCATRAAIREARKQLLSWSQLDQSDLTFDLEVPATVQVVKELCGP 910 (937)
Q Consensus 843 ~~-p~gp~GaKGvGE~~~~~~~av~~Ai~nAi~~A~~~~~~~~~~~g~~~~~~~~lP~Tpe~v~~a~~~ 910 (937)
.+ ....+++|.+||||++++.+|..||.+|+.. .++. ..-...+.|+|||+|+.++..
T Consensus 715 ~n~e~ti~rSKAVGEPPlmL~iSV~~Al~~AvAs-vaD~---------r~~p~ldaPATpErVlmave~ 773 (781)
T COG4631 715 ENAEPTIHRSKAVGEPPLMLGISVLEALSDAVAS-VADY---------RVCPRLDAPATPERVLMAVER 773 (781)
T ss_pred cccccccccccccCCCCcchhHHHHHHHHHHHHH-hccc---------CcCCCCCCCCCHHHHHHHHHH
Confidence 33 3346899999999999988899999888863 2221 113357899999999988753
No 14
>COG1529 CoxL Aerobic-type carbon monoxide dehydrogenase, large subunit CoxL/CutL homologs [Energy production and conversion]
Probab=100.00 E-value=2.5e-126 Score=1156.09 Aligned_cols=702 Identities=26% Similarity=0.359 Sum_probs=619.3
Q ss_pred CCCCCCccCCcccccccccccccccCCCCCCcEEEEEEecCCCCeEEEEEecCCcC-CCCEEEEEeccCCCccCCCccCC
Q 002311 157 FPVGEPIPKSGAALQASGEAIFVDDIPSPINCLYGAFVYSTKPLVRIRSVEIKSKS-LPGVSAFLSYKDIPEAGQNIGSR 235 (937)
Q Consensus 157 ~~vG~~~~R~d~~~kvtG~a~Y~~Di~~~pgmL~a~~vrSp~ahArI~sID~s~A~-~pGVvaV~T~~Dip~~g~~~~~~ 235 (937)
..+|+++.|.|+..||||+++|++|+. .|||+|+++||||++|++|++||.++|+ +|||++|+|++|+|. ..+. ..
T Consensus 4 ~~~gr~~~R~~~~~~vtG~~~y~~d~~-~~~~~~~~~vrs~~a~a~i~~id~~ea~~~~gv~av~ta~~l~~-~~~~-~~ 80 (731)
T COG1529 4 EIIGRSVLRADGLGKVTGKGRYADDIV-APGMLYAAFVRSPYAHARIVSIDVSEAQGLPGVLAVITAEELPA-WSPV-RV 80 (731)
T ss_pred ccCCCCcccccchhheeeeeheehhhc-CCCCceEEEEeccCCceEEEEechHHHhhCCCeEEEechhhCcc-cccc-cc
Confidence 468999999999999999999999997 7899999999999999999999999999 999999999999983 1110 00
Q ss_pred CCCCCcccCCCCceeecCCcEEEEEeCCHHHHHHhcccceEEEccCCCCCCcCCHHHHhcCCCCcccCC-cc-cccccCC
Q 002311 236 TKFGPEPLFADELTHCAGQPIAFVVADTQKIANRAADLAVVDYDVGNLEPPILSVEEAVGRSSFFEVPS-FL-YPKSVGD 313 (937)
Q Consensus 236 ~~~~~~p~la~~~Vry~G~pVA~VvAet~~~A~~Aa~lI~Vey~~e~L~p~v~d~~~Al~~~a~~~~~~-~~-~~~~~Gd 313 (937)
...+..++|+.++|+|.|||||+|+|+|+++|++|+++|+|+| |+| |+++|+++|+.++++..++. |+ ....+||
T Consensus 81 ~~~p~~~~l~~~~v~~~G~~vA~vva~d~~~A~~aa~~v~V~y--e~l-~~~v~~~~a~~~~~~~ih~~~n~~~~~~~g~ 157 (731)
T COG1529 81 ELAPADEVLARGKVRYTGEPVAAVVAEDEYQARAAAELVLVEY--EAL-PPVVDPEEALAEDAPVIHDELNIARDATFGD 157 (731)
T ss_pred ccCCcchhhccCceEEeCCeEEEEEeCCHHHHHHHHhhceeee--ccC-CCcCCHHHHhcCCCccccccccccccccccc
Confidence 0111112788899999999999999999999999999999999 999 99999999999977422122 33 3567788
Q ss_pred hhhhcccCCeEEEEEEEEecccccCCccCCceEEEECCCCcEEEEeCCCChHHHHHHHHHHhCCCCCcEEEEeccCCCCC
Q 002311 314 ISKGMNEADHKILSAEVKLGSQYYFYMETQTALAVPDEDNCLVVYSSIQCPEYAHATIARCLGIPEHNVRVITRRVGGGF 393 (937)
Q Consensus 314 ~e~af~~A~~vvve~~~~~~~~~h~~mEp~~avA~~~~dg~l~V~~stQ~p~~~r~~lA~~Lglp~~kVrV~~~~vGGgF 393 (937)
.| +|++|+++ |+.+|.++++.|++|||++++++|+++++|++|++||+|+.+|.+|+++|++|+++|||+++++||||
T Consensus 158 ~~-a~a~A~~~-v~~~~~~~~~~~~~~E~~g~~a~~~d~~~lt~~~~tQ~~~~~~~~l~~~l~~p~~~vrvi~~dvGggf 235 (731)
T COG1529 158 DD-AFAAAAVV-VEAPYKTPRKDPNPMEPHGVVAVPDDGDKLTVWASTQIPHRLRGMLAAVLGIPPSKVRVISPDVGGGF 235 (731)
T ss_pred ch-hhhcCcEE-eeeeeeccCcCccCcccccceeeEcCCCeEEEEEccCCchHHHHHHHHHhCCCHHHeEEecCCCCccc
Confidence 88 99999997 99999999999999999999999993238999999999999999999999999999999999999999
Q ss_pred CCCCcccchHHHHHHHHHHhCCCCEEEEcChhhhhhhcCCCCceEEEEEEEECCCCcEEEEEEEEEeeCCCCCCCCC-ch
Q 002311 394 GGKAIKAMPVATACALAAYKLCRPVRIYVNRKTDMVMAGGRHPMKIEYNVGFKSNGKITALQLNILIDAGQYPDVSP-NI 472 (937)
Q Consensus 394 G~K~~~~~~~~~~aAlaA~~~gRPVk~~~~R~E~~~~~~~R~~~~~~~k~g~d~dG~i~A~~~~~~~d~Gay~~~~~-~~ 472 (937)
|+|.. .+....+++++|+++||||||+++|+|.|+.+.+||+..+++++++++||+|++++++++.|.|+|. +. ..
T Consensus 236 G~K~~-~~~~~~~~~~aa~~~grpVk~~~tR~e~~~~~~~~~~~~~~~~~~a~~dg~l~~~~~~~~~~~Gay~--~~~~~ 312 (731)
T COG1529 236 GSKGV-VYVEEILAALAAVVAGRPVKWIETREELFVATGHRRATLIDVKLGADKDGRLLAIKGTVAADTGAYN--GPTVP 312 (731)
T ss_pred CCccc-ceeHHHHHHHHHHhcCCCeEEecchHHhhhccCCCCCceEEeeeecCcCCcEEeeeeeEEecCCCcc--ccchh
Confidence 99986 4566777778999999999999999999999999999999999999999999999999999999997 33 33
Q ss_pred hhhhhccCCCCccccEEEEEEEeecCCCCCCccCCCChhHHHHHHHHHHHHHHHHcCCCHHHHHHhhcCCCCCccccccC
Q 002311 473 PAYMIGALKKYDWGALHFDIKVCRTNLPSRTAMRAPGEVQGSFIAEAVIEHVASTLSMEVDFVRSINLHTHNSLNLFYES 552 (937)
Q Consensus 473 ~~~~~~~~~~Y~ipn~~~~~~~v~TN~~p~ga~RG~G~pq~~fa~E~~mD~lA~~lG~DP~e~R~kNl~~~~~~~~~~~~ 552 (937)
......+.++|.|+|+++..+.++||++|+++|||+|.++++|++|++||+||++|||||+|||++|+++.+.+.
T Consensus 313 ~~~~~~~~g~Y~i~~~~~~~~~v~tn~~p~~~~Rg~g~~~~~~a~E~~~d~lA~~Lgidp~eiR~~n~~~~g~~~----- 387 (731)
T COG1529 313 AAAAGLARGPYKIEAVYIEPYLVHTNMPPNGAYRGAGRPEGTFALERAVDELAEELGIDPVEIRLRNLIRGGPFG----- 387 (731)
T ss_pred HHHHHhcCCceecccceeeeEEEEcCCCCCcccccCCCchhHHHHHHHHHHHHHHhCCCHHHHhhhhccccCCCC-----
Confidence 334456679999999999999999999999999999999999999999999999999999999999999977542
Q ss_pred CCCccccC-CHHHHHHHHHHhcCChhhHHHHHHHhhccCCcceeeeecceEeecCCCC-CceEEEEccCCcEEEEecccc
Q 002311 553 SAGELEEY-TIPLIWDRLAVSSSFNQRTEVIKEFNRSNLWRKKGISRVPIVYDVPLMS-TPGKVSILSDGSVVVEVGGIE 630 (937)
Q Consensus 553 ~~g~~~~~-~~~~~l~~~~~~~~~~~r~~~~~~~~~~~~~~~~Gig~a~~~~~~g~~~-~~a~v~l~~DG~v~v~~g~~e 630 (937)
++..+++ ++.+|+++++++++|.++.....+.++ ...++|+|++++.+.++.++ +.+.++++.||++++.+|.++
T Consensus 388 -~~~~~~~~~~~~~~~~~ak~~~~~~~~~k~~~~re--~~~~~G~g~a~~~~~~~~~~~~~a~v~~~~~g~v~v~~g~~~ 464 (731)
T COG1529 388 -LGRRYDSGDYLEELDEAAKRFGWSERPVKPIWTRE--GDLRRGVGRAMYTEPSGAGPGEGARVRLEADGTVTVRTGATD 464 (731)
T ss_pred -CcccccCccHHHHHHHHHHhcCcccccCChhhhhc--CCeeeeeEEEEEEEeccCCCCCcEEEEEcCCCcEEEEECCcc
Confidence 3556665 999999999999999765443333332 23457999998999888877 779999999999999999999
Q ss_pred ccccHHHHHHHHHHHHhcccccCCCCCCCCcEEEecCCCccccCCCCCcccchhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 002311 631 LGQGLWTKVKQMAAFALSSIQCGGMGDLLETVRVIQADTLSVIQGGLTAGSTKSEASCQAVRNCCKILVERLTPLRERLQ 710 (937)
Q Consensus 631 ~GqG~~T~~aqiaAe~Lgi~~~~~~~~~~~~I~v~~~dT~~~p~~~~t~aSr~t~~~g~Av~~Aa~~l~~~l~~~aa~~~ 710 (937)
+|||++|+++|++||.||| |+++|+++.+||+..+.+++|+|||+|.++++|++.||++|++|+...++.++
T Consensus 465 ~G~G~~t~~~q~~ae~lgi--------p~~~V~v~~gDt~~~~~~~~s~GS~~~~~~~~A~~~a~~~l~~k~~~~aa~~l 536 (731)
T COG1529 465 IGQGTDTVLAQIAAEELGI--------PPDDVEVVHGDTDVPVGGWGSVGSRGTAVAGSAVIDAAAKLAEKDPVAAARML 536 (731)
T ss_pred CCCcHHHHHHHHHHHHhCC--------CHHHEEEEecCCCCCCCCCCCcCcccccchHHHHHHHHHHHHHHHHHHHHhhh
Confidence 9999999999999999999 99999999999999999999999999999999999999999999988887766
Q ss_pred hcc--------C-----------ccCHHHHHHHHHhcCceeEEEEEecCCCCccccccEEEEEEEEEEECCCCcEEEEEE
Q 002311 711 AQM--------G-----------SVKWETLIQQAYLQSVSLSASSLYLPDFTSMKYLNYGAAVSEVEINLLTGETTIVQS 771 (937)
Q Consensus 711 ~~~--------~-----------~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ga~~aeVeVD~~TG~v~V~r~ 771 (937)
+.+ + .++|.+++... ...++.....|.... .|+|+||+||||||++||++||+|+
T Consensus 537 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~a~~~--~~~~~~~~~~~~~~~----~~~~~A~~~EV~Vd~~tG~vrV~r~ 610 (731)
T COG1529 537 GADAEDVVLEDGAFKVGGGDRRSAVSLKEVAGKG--LAPGLAVAASFGSDN----TYPYGAHIAEVEVDPETGEVRVLRV 610 (731)
T ss_pred CCChhHeeeccCeeeeccCCccceeeHHHhhhcc--ccCcccccccccccc----cccceeEEEEEEEECCCCcEEEEEE
Confidence 321 0 14566655432 112233334443322 5789999999999999999999999
Q ss_pred EEEecCCccCCccccchhhhchhHHHHHHHhccCceecCCCccccCCCCCCCCCCCCCCCCeeEEEEecCCCCCCCCCCc
Q 002311 772 DIIYDCGQSLNPAVDLGQIEGSFVQGIGFFMLEEYPTNSDGLVVSEGTWTYKIPTLDTIPKQFNVEILNSGHHKKRVLSS 851 (937)
Q Consensus 772 ~~v~D~G~vINP~~v~gQi~Ggi~qGiG~AL~Ee~~~d~~G~~l~~~~~dY~iP~~~diP~~i~v~~~e~~~~p~gp~Ga 851 (937)
++++|||++|||++++|||+||++||||+||+|+.+||++|+++|+||.||.||++.|+|+ ++++++++| +|.+|+|+
T Consensus 611 ~~~~D~G~vvNP~~~~~Qv~GGi~~Gig~aL~E~~i~d~~g~~~~~n~~dY~ip~~~d~P~-iev~~v~~p-~~~~p~g~ 688 (731)
T COG1529 611 VAVDDCGRVVNPKLAEGQVEGGILMGIGMALYEEAIYDEDGQLLNSNLADYGIPRAADAPE-VEVEFVESP-SPFGPLGA 688 (731)
T ss_pred EEEEecCCccCHHHHHHHHHhHHHHHHHHHhhccceECCCCCcCCCCcccccCCCcccCCc-eEEEEecCC-CCCCCCCC
Confidence 9999999999999999999999999999999999999999999999999999999999997 999999998 88899999
Q ss_pred cccCCCCccchhhHHHHHHHHHHHHHHhhhcccccCCCCcccccCCCCCHHHHHHhcC
Q 002311 852 KASGEPPLLLAVSVHCATRAAIREARKQLLSWSQLDQSDLTFDLEVPATVQVVKELCG 909 (937)
Q Consensus 852 KGvGE~~~~~~~av~~Ai~nAi~~A~~~~~~~~~~~g~~~~~~~~lP~Tpe~v~~a~~ 909 (937)
||+||+++++ +++||+|||++|+| .++++||+|||+||++++
T Consensus 689 kGvGE~g~~~---~~pAvaNAV~~AtG-------------kri~~lP~tp~~i~~al~ 730 (731)
T COG1529 689 KGVGEGGIIG---IAPAIANAVFDATG-------------KRIRDLPITPERILAALR 730 (731)
T ss_pred CCcCcCccCc---hhHHHHHHHHHHhC-------------CccccCCCCHHHHHHhhh
Confidence 9999999998 67799999999996 688999999999999875
No 15
>PF02738 Ald_Xan_dh_C2: Molybdopterin-binding domain of aldehyde dehydrogenase; InterPro: IPR008274 Aldehyde oxidase (1.2.3.1 from EC) catalyses the conversion of an aldehyde in the presence of oxygen and water to an acid and hydrogen peroxide. The enzyme is a homodimer, and requires FAD, molybdenum and two 2FE-2S clusters as cofactors. Xanthine dehydrogenase (1.1.1.204 from EC) catalyses the hydrogenation of xanthine to urate, and also requires FAD, molybdenum and two 2FE-2S clusters as cofactors. This activity is often found in a bifunctional enzyme with xanthine oxidase (1.1.3.22 from EC) activity too. The enzyme can be converted from the dehydrogenase form to the oxidase form irreversibly by proteolysis or reversibly through oxidation of sulphydryl groups.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3NVZ_C 3NVY_C 1FO4_B 3NRZ_L 3AM9_A 3B9J_C 3AX7_B 3NVW_L 3BDJ_A 3ETR_N ....
Probab=100.00 E-value=2e-109 Score=988.21 Aligned_cols=510 Identities=34% Similarity=0.461 Sum_probs=413.1
Q ss_pred cccccCChhhhcccCCeEEEEEEEEecccccCCccCCceEEEECCCCcEEEEeCCCChHHHHHHHHHHhCCCCCcEEEEe
Q 002311 307 YPKSVGDISKGMNEADHKILSAEVKLGSQYYFYMETQTALAVPDEDNCLVVYSSIQCPEYAHATIARCLGIPEHNVRVIT 386 (937)
Q Consensus 307 ~~~~~Gd~e~af~~A~~vvve~~~~~~~~~h~~mEp~~avA~~~~dg~l~V~~stQ~p~~~r~~lA~~Lglp~~kVrV~~ 386 (937)
...++||+|++|++|+++ ||++|++|+++|++|||++|+|+|+++|+|+||++||+|+.+|..||++||||++||||+.
T Consensus 16 ~~~~~GDve~af~~a~~v-ve~~y~~~~~~h~~mEp~~~~A~~~~~g~l~v~~~tQ~p~~~r~~va~~lglp~~~V~V~~ 94 (547)
T PF02738_consen 16 RHIERGDVEAAFAEADHV-VEAEYRTPRQAHAPMEPHGAVAWWDEDGRLTVWSSTQWPFHVRRAVAEALGLPPEKVRVIS 94 (547)
T ss_dssp EEEEESSHHHHHHHTSEE-EEEEEEE-BB----SS-SEEEEEEETTTEEEEEES-SSHHHHHHHHHHHHTS-GGGEEEEE
T ss_pred cccccCCHHHHHhhCCEE-EEEEEEECCccccCCCCCeEEEEEccCCCEEEEECCcCHhHHHHHHhhhhcCChhHEEEee
Confidence 357899999999999996 9999999999999999999999999678999999999999999999999999999999999
Q ss_pred ccCCCCCCCCCcccchHHHHHHHHHHhCCCCEEEEcChhhhhhhcCCCCceEEEEEEEECCCCcEEEEEEEEEeeCCCCC
Q 002311 387 RRVGGGFGGKAIKAMPVATACALAAYKLCRPVRIYVNRKTDMVMAGGRHPMKIEYNVGFKSNGKITALQLNILIDAGQYP 466 (937)
Q Consensus 387 ~~vGGgFG~K~~~~~~~~~~aAlaA~~~gRPVk~~~~R~E~~~~~~~R~~~~~~~k~g~d~dG~i~A~~~~~~~d~Gay~ 466 (937)
+++|||||.|.. ...++++||++|+++||||||+|||+|+|+++.+||++.+++|+|+|+||+|+|++++++.|+|+|.
T Consensus 95 ~~~GGgFG~~~~-~~~~~~~aa~~a~~~grPVk~~~tR~e~~~~~~~r~~~~~~~~~g~~~dG~i~a~~~~~~~d~Ga~~ 173 (547)
T PF02738_consen 95 PYVGGGFGKKKQ-DSPIAVLAALAAKKTGRPVKLVWTREEDFRAGPKRPPTRIRVRAGADKDGKITALDHDIYADGGAYA 173 (547)
T ss_dssp SB-S--TTTTSS-THHHHHHHHHHHHHHSSEEEEE--HHHHHHHS-BB-EEEEEEEEEE-TTS-EEEEEEEEEEEEESS-
T ss_pred eecCCCCCCccc-cchHHHHHHHHHhccCceEEEEechHHhcCCCCCccHHHhhhhheECCCCCEEEeeeeeeccCCccc
Confidence 999999994432 5667888999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCC-chhhhhhccCCCCccccEEEEEEEeecCCCCCCccCCCChhHHHHHHHHHHHHHHHHcCCCHHHHHHhhcCCCCC
Q 002311 467 DVSP-NIPAYMIGALKKYDWGALHFDIKVCRTNLPSRTAMRAPGEVQGSFIAEAVIEHVASTLSMEVDFVRSINLHTHNS 545 (937)
Q Consensus 467 ~~~~-~~~~~~~~~~~~Y~ipn~~~~~~~v~TN~~p~ga~RG~G~pq~~fa~E~~mD~lA~~lG~DP~e~R~kNl~~~~~ 545 (937)
+++. +....+....++|+|||++++++.|+||++|.|+|||||.+|+.||+|++||++|++|||||+|||+||+.+++
T Consensus 174 ~~~~~~~~~~~~~~~~~Y~ipn~~~~~~~v~Tn~~~~g~~Rg~G~~q~~fa~E~~~DelA~~lg~DP~e~R~~N~~~~~- 252 (547)
T PF02738_consen 174 SFSPAVAPRAGAGADGPYRIPNVRIDARAVYTNTPPAGAFRGFGAPQAAFALESFMDELAEKLGMDPLEFRLKNLIDPG- 252 (547)
T ss_dssp TTHHHHHHHHHHTTTTTB--SEEEEEEEEEE-SSSSBE-STTTTHHHHHHHHHHHHHHHHHHHTS-HHHHHHHHB-GTT-
T ss_pred cccccchhhhhcccCCCcccccEEEEEEeccCCCCCCCcCCCCCHHHHHHHHHHHHHHHHHHhCcChHHHHHhcccccc-
Confidence 8765 44455566689999999999999999999999999999999999999999999999999999999999999765
Q ss_pred ccccccCCCCccccC-CHHH-HHHHHHHhcCChhhHHHHHHHhhccCCcceeeeecceEeecCCCC-----CceEEEEcc
Q 002311 546 LNLFYESSAGELEEY-TIPL-IWDRLAVSSSFNQRTEVIKEFNRSNLWRKKGISRVPIVYDVPLMS-----TPGKVSILS 618 (937)
Q Consensus 546 ~~~~~~~~~g~~~~~-~~~~-~l~~~~~~~~~~~r~~~~~~~~~~~~~~~~Gig~a~~~~~~g~~~-----~~a~v~l~~ 618 (937)
+.+++|..+++ ++.+ ||+++++.++|.++++..+.++....|+++|+|+++..++.+..+ +++.|+|++
T Consensus 253 ----~~~~~g~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gig~~~~~~~~~~~~~~~~~~~a~v~l~~ 328 (547)
T PF02738_consen 253 ----DRTPTGQPYDSGDYPEDCLEKAAEHSGWRRRQKEVREFGSGNGWRGRGIGLGCAMYGSGTGGGSGDQSSARVRLNP 328 (547)
T ss_dssp ----EB-TTS-BETS--HHHHHHHHHHHHHCHHHHHHHHHHCCHEESSEEEEEEEEEEEEEESTTSGGGSEEEEEEEE-T
T ss_pred ----cccccCcccccCcHHHHHHHHHHhhhchhhhhhHHhhccccccccccccCCCccccccccccccccCCcEEEEEEe
Confidence 34567788776 8888 999999999999998777777777789999999998888777653 579999999
Q ss_pred CCcEEEEeccccccccHHHHHHHHHHHHhcccccCCCCCCCCcEEEecCCCccccCCCCCcccchhhhhHHHHHHHHHHH
Q 002311 619 DGSVVVEVGGIELGQGLWTKVKQMAAFALSSIQCGGMGDLLETVRVIQADTLSVIQGGLTAGSTKSEASCQAVRNCCKIL 698 (937)
Q Consensus 619 DG~v~v~~g~~e~GqG~~T~~aqiaAe~Lgi~~~~~~~~~~~~I~v~~~dT~~~p~~~~t~aSr~t~~~g~Av~~Aa~~l 698 (937)
||+|+|++|..|||||++|+++||+||+||| |+++|+|..+||+.+|++++|+|||+|+++|+|+++||++|
T Consensus 329 DG~v~v~~~~~e~GqG~~T~~~qiaAe~Lgi--------~~~~V~v~~~dT~~~p~~~~t~gSr~t~~~g~Av~~Aa~~l 400 (547)
T PF02738_consen 329 DGSVTVYTGGVEMGQGSRTALAQIAAEELGI--------PPEDVRVVSGDTDTTPYDGGTGGSRSTYMSGNAVRKAAEDL 400 (547)
T ss_dssp TS-EEEEES--BSSSSHHHHHHHHHHHHHTS---------GGGEEEEECBTTTS-SB--S-TTTHHHHHHHHHHHHHHHH
T ss_pred CCCEEEEEecccCCcchhhhHHHHHHHHhCC--------ChhhEEEEeCCCcCCCCCCCCccchhhHhhHHHHHHHHHHH
Confidence 9999999999999999999999999999999 99999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcc-CccCHHHH--HHHHHhcCceeEEEEEec-------C----CCCccccccEEEEEEEEEEECCCC
Q 002311 699 VERLTPLRERLQAQM-GSVKWETL--IQQAYLQSVSLSASSLYL-------P----DFTSMKYLNYGAAVSEVEINLLTG 764 (937)
Q Consensus 699 ~~~l~~~aa~~~~~~-~~~~~~~~--~~~~~~~~~~l~~~~~~~-------~----~~~~~~~~~~ga~~aeVeVD~~TG 764 (937)
|+||+++|+.+++.+ ..+.|++- ........+.+.+...+. + .+..+.+++|+++++|||||++||
T Consensus 401 r~~l~~~Aa~~~~~~~~~l~~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~eVeVD~~TG 480 (547)
T PF02738_consen 401 REKLLEIAAEILGVDPEDLELEDGRVISPAKGVSISEAAIAAYANPPTGFDPGTGGYGPPASYYSFGAHFAEVEVDTETG 480 (547)
T ss_dssp HHHHHHHHHHHTTSSGGGEECHCHETHHHHHHEEHHHEEEHHHCTTSTTCETTTTEESBSSSEEEEEEEEEEEEEETTTS
T ss_pred HHHHHHHHHHhcccccchhhhhhhccccccccccccccccccccccccccccccccccCCccceeeeeeecccccccccc
Confidence 999999999988642 22333332 111111111111111000 0 012456789999999999999999
Q ss_pred cEEEEEEEEEecCCccCCccccchhhhchhHHHHHHHhccCceecCCCccccCCCCCCCCCCCCCCC
Q 002311 765 ETTIVQSDIIYDCGQSLNPAVDLGQIEGSFVQGIGFFMLEEYPTNSDGLVVSEGTWTYKIPTLDTIP 831 (937)
Q Consensus 765 ~v~V~r~~~v~D~G~vINP~~v~gQi~Ggi~qGiG~AL~Ee~~~d~~G~~l~~~~~dY~iP~~~diP 831 (937)
+|+|+|+++++|||++|||+.++|||+||++||||+||+|++.||++|+++|+||+||++|++.|+|
T Consensus 481 ~v~v~~~~~~~D~G~~iNP~~v~gQi~Gg~~~Glg~al~E~~~~d~~G~~~~~~~~dY~ip~~~d~P 547 (547)
T PF02738_consen 481 EVRVLRVVAAHDCGRVINPDIVEGQIEGGIVQGLGYALYEELVYDENGRPLNPNFADYKIPTAADVP 547 (547)
T ss_dssp EEEEEEEEEEEEEBS-SBHHHHHHHHHHHHHHHHHHHHT--BEBTTTSEBSTSSTTTST---GGGS-
T ss_pred cccceeeeeeccCCcccCHHHHhhhccccHHHHHHHHhcCCeEECCCCcCCCCChhhCcCCCccccC
Confidence 9999999999999999999999999999999999999999999998999999999999999999998
No 16
>PF01315 Ald_Xan_dh_C: Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain; InterPro: IPR000674 Aldehyde oxidase (1.2.3.1 from EC) catalyses the conversion of an aldehyde in the presence of oxygen and water to an acid and hydrogen peroxide. The enzyme is a homodimer, and requires FAD, molybdenum and two 2FE-2S clusters as cofactors. Xanthine dehydrogenase (1.1.1.204 from EC) catalyses the hydrogenation of xanthine to urate, and also requires FAD, molybdenum and two 2FE-2S clusters as cofactors. This activity is often found in a bifunctional enzyme with xanthine oxidase (1.1.3.22 from EC) activity too. The enzyme can be converted from the dehydrogenase form to the oxidase form irreversibly by proteolysis or reversibly through oxidation of sulphydryl groups.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1N63_E 1N60_B 1ZXI_E 1N5W_E 1N62_B 1N61_E 3AN1_B 2E3T_A 1WYG_A 2W3R_D ....
Probab=99.96 E-value=2.2e-29 Score=237.47 Aligned_cols=107 Identities=42% Similarity=0.661 Sum_probs=88.3
Q ss_pred cccccccccCCCCCCcEEEEEEecCCCCeEEEEEecCCcC-CCCEEEEEeccCCCccCCCccCCCCCCC--cccCCCCce
Q 002311 173 SGEAIFVDDIPSPINCLYGAFVYSTKPLVRIRSVEIKSKS-LPGVSAFLSYKDIPEAGQNIGSRTKFGP--EPLFADELT 249 (937)
Q Consensus 173 tG~a~Y~~Di~~~pgmL~a~~vrSp~ahArI~sID~s~A~-~pGVvaV~T~~Dip~~g~~~~~~~~~~~--~p~la~~~V 249 (937)
||+++|++|+. +|||||+++||||++||+|+|||+++|+ +|||++|+|++|+|..+.+.. .....+ +|+|++++|
T Consensus 1 TG~a~Y~~Di~-~~~~l~~~~vrS~~a~a~I~sid~~~A~~~pGV~~v~t~~Dip~~~~~~~-~~~~~~~~~~~la~~~V 78 (111)
T PF01315_consen 1 TGEARYVDDIP-PPGMLYAAFVRSPIAHARIKSIDTSEALAMPGVVAVITAEDIPGINPNGG-LPIPHDEPQPVLADDKV 78 (111)
T ss_dssp TT-S-BGGGSC-STTTEEEEEEE-SSSSEEEEEEEGHHHHHSTTEEEEEEGGGHSSGSEESC-SCSTTSSEEESS-SSEE
T ss_pred CcCeEcccccC-CCCCeEEEEEecCcCcEEEEEEecHHHccCCCEEEEEEecccCccccCcc-ccccCCCceEeccCCeE
Confidence 89999999997 7899999999999999999999999999 999999999999994332221 122333 479999999
Q ss_pred eecCCcEEEEEeCCHHHHHHhcccceEEEccCCC
Q 002311 250 HCAGQPIAFVVADTQKIANRAADLAVVDYDVGNL 283 (937)
Q Consensus 250 ry~G~pVA~VvAet~~~A~~Aa~lI~Vey~~e~L 283 (937)
||+|||||+|||+|+++|++|+++|+|+| |+|
T Consensus 79 ~y~GqpVa~VvAet~~~A~~Aa~~V~V~Y--e~l 110 (111)
T PF01315_consen 79 RYVGQPVALVVAETREAARDAAELVKVEY--EEL 110 (111)
T ss_dssp SSTT-EEEEEEESSHHHHHHHHHT-EEEE--EE-
T ss_pred eECCCeEEEEEECCHHHHHHHhcCcEEEe--EeC
Confidence 99999999999999999999999999999 887
No 17
>TIGR03193 4hydroxCoAred 4-hydroxybenzoyl-CoA reductase, gamma subunit. 4-hydroxybenzoyl-CoA reductase converts 4-hydroxybenzoyl-CoA to benzoyl-CoA, a common intermediate in the degradation of aromatic compounds. This protein family represents the gamma chain of this three-subunit enzyme.
Probab=99.92 E-value=1.6e-25 Score=217.50 Aligned_cols=87 Identities=36% Similarity=0.553 Sum_probs=80.5
Q ss_pred EEEEECCEEEEEecCCCCCChHHHHhccCCCccCCCce---------EEEeCccccCC----------------------
Q 002311 14 VVFAVNGEKFEVSSVDPSTTLLEFLRYHTRFKSVKLGC---------VLVDAEKTHRP---------------------- 62 (937)
Q Consensus 14 i~~~~Ng~~~~~~~~~p~~~Ll~~LR~~~~l~g~k~gC---------vl~dg~~~~~~---------------------- 62 (937)
|+|+|||+++++ +++|+++|+||||++++|||+|.|| |+|||+++++|
T Consensus 2 i~~~vNG~~~~~-~~~~~~~Ll~~LR~~lgltg~K~gC~~G~CGACtVlvdg~~v~SCl~~~~~~~G~~V~TiEgl~~~~ 80 (148)
T TIGR03193 2 LRLTVNGRWRED-AVADNMLLVDYLRDTVGLTGTKQGCDGGECGACTVLVDGRPRLACSTLAHRVAGRKVETVEGLATNG 80 (148)
T ss_pred EEEEECCEEEEe-ecCCCCcHHHHHHHhcCCCCCCCCCCCCCCCCCEEEECCeEeeccHhhHhhcCCCcEEEeCCCCCCC
Confidence 789999999999 7999999999999999999999999 99999998764
Q ss_pred ------------------CCCCCCC-----------CCCHHHHHHHHhCCcccCCCCHHHHHHHHHHh
Q 002311 63 ------------------EPPPGFS-----------KLTISEAEKAIAGNLCRCTGYRPIADACKSFA 101 (937)
Q Consensus 63 ------------------~~~pg~~-----------~p~~~ei~~~l~gnlCRCtgy~~i~~A~~~~~ 101 (937)
.|||||+ +|+++||+++|+|||||||||++|++|++.++
T Consensus 81 ~l~pvq~af~~~~a~QCGfCtPG~vms~~~ll~~~p~ps~~ei~~al~GnLCRCTGY~~I~~Av~~aa 148 (148)
T TIGR03193 81 RLSRLQQAFHERLGTQCGFCTPGMIMAAEALLRRNPSPSRDEIRAALAGNLCRCTGYVKIIESVEAAA 148 (148)
T ss_pred CCCHHHHHHHHcCCCcCCCCCccHHHHHHHHHHcCCCCCHHHHHHHHcCCccCCCCCHHHHHHHHHhC
Confidence 2689985 68999999999999999999999999998763
No 18
>COG2080 CoxS Aerobic-type carbon monoxide dehydrogenase, small subunit CoxS/CutS homologs [Energy production and conversion]
Probab=99.91 E-value=3.6e-25 Score=214.54 Aligned_cols=91 Identities=42% Similarity=0.635 Sum_probs=84.0
Q ss_pred eEEEEEECCEEEEEecCCCCCChHHHHhccCCCccCCCce---------EEEeCccccCC--------------------
Q 002311 12 HSVVFAVNGEKFEVSSVDPSTTLLEFLRYHTRFKSVKLGC---------VLVDAEKTHRP-------------------- 62 (937)
Q Consensus 12 ~~i~~~~Ng~~~~~~~~~p~~~Ll~~LR~~~~l~g~k~gC---------vl~dg~~~~~~-------------------- 62 (937)
+.|+|+|||+++++ +++|+++|+++||++++|||+|.|| |||||++|++|
T Consensus 2 ~~i~ltvNG~~~~~-~~~p~~~Ll~~LRd~l~ltgtk~GC~~g~CGACtVlvDG~~v~SCl~~a~~~~G~~ItTiEGl~~ 80 (156)
T COG2080 2 MPITLTVNGEPVEL-DVDPRTPLLDVLRDELGLTGTKKGCGHGQCGACTVLVDGEAVNSCLTLAVQAEGAEITTIEGLAK 80 (156)
T ss_pred CcEEEEECCeEEEE-EeCCCChHHHHHHHhcCCCCcCCCCCCccCCceEEEECCeEehHHHHHHHHhCCCeEEEeecccC
Confidence 57999999999999 7999999999999999999999999 99999999754
Q ss_pred ---------------------CCCCCCC-----------CCCHHHHHHHHhCCcccCCCCHHHHHHHHHHhhh
Q 002311 63 ---------------------EPPPGFS-----------KLTISEAEKAIAGNLCRCTGYRPIADACKSFAAD 103 (937)
Q Consensus 63 ---------------------~~~pg~~-----------~p~~~ei~~~l~gnlCRCtgy~~i~~A~~~~~~~ 103 (937)
.|+|||+ .||++||+++|+|||||||||.+|++||+.++..
T Consensus 81 ~~~~l~~vQ~Af~e~~~~QCGyCtpG~Imsa~~lL~~~~~ps~~eI~~~lsGnlCRCt~Y~~I~~Ai~~aa~~ 153 (156)
T COG2080 81 KDGGLHPVQQAFLEHDAFQCGYCTPGQIMSATALLDRNPAPTDEEIREALSGNLCRCTGYQNIVAAILDAAER 153 (156)
T ss_pred CCCCcCHHHHHHHHcCCCcCCCCcHHHHHHHHHHHHhCCCCCHHHHHHHHhcCccccCCHHHHHHHHHHHHHH
Confidence 2688885 6899999999999999999999999999998753
No 19
>PRK09908 xanthine dehydrogenase subunit XdhC; Provisional
Probab=99.91 E-value=1.7e-24 Score=212.50 Aligned_cols=89 Identities=39% Similarity=0.658 Sum_probs=80.4
Q ss_pred eeEEEEEECCEEEEEecCCCCCChHHHHhccCCCccCCCce---------EEEeCccccCC-------------------
Q 002311 11 RHSVVFAVNGEKFEVSSVDPSTTLLEFLRYHTRFKSVKLGC---------VLVDAEKTHRP------------------- 62 (937)
Q Consensus 11 ~~~i~~~~Ng~~~~~~~~~p~~~Ll~~LR~~~~l~g~k~gC---------vl~dg~~~~~~------------------- 62 (937)
.+.|+|+|||+.+++ +++|+++||||||+. +|||+|.|| |||||+++++|
T Consensus 6 ~~~i~~~vNG~~~~~-~~~~~~~Ll~~LR~~-gltgtK~GC~~G~CGACtVlvdg~~v~SCl~~a~~~~G~~V~TiEGl~ 83 (159)
T PRK09908 6 TITIECTINGMPFQL-HAAPGTPLSELLREQ-GLLSVKQGCCVGECGACTVLVDGTAIDSCLYLAAWAEGKEIRTLEGEA 83 (159)
T ss_pred ceeEEEEECCEEEEE-ecCCCCcHHHHHHHc-CCCCCCCCcCCCCCCCcEEEECCcEeehhHhhHHHhCCCEEEeecCCC
Confidence 357999999999999 799999999999985 999999999 99999998764
Q ss_pred ---------------------CCCCCCC---------C----CCHHHHHHHHhCCcccCCCCHHHHHHHHHHh
Q 002311 63 ---------------------EPPPGFS---------K----LTISEAEKAIAGNLCRCTGYRPIADACKSFA 101 (937)
Q Consensus 63 ---------------------~~~pg~~---------~----p~~~ei~~~l~gnlCRCtgy~~i~~A~~~~~ 101 (937)
.|||||+ + |+++||+++|+|||||||||++|++|++.+.
T Consensus 84 ~~~~l~pvQ~Af~~~~a~QCGyCtPG~ims~~aLl~~~~~~~~s~~eI~~al~GNlCRCTGY~~I~~Av~~~~ 156 (159)
T PRK09908 84 KGGKLSHVQQAYAKSGAVQCGFCTPGLIMATTAMLAKPREKPLTITEIRRGLAGNLCRCTGYQMIVNTVLDCE 156 (159)
T ss_pred CCCCCCHHHHHHHHcCCCcCCCCCccHHHHHHHHHHcCCCCCCCHHHHHHHHcCCccCCCCCHHHHHHHHHHh
Confidence 2689984 2 4899999999999999999999999999764
No 20
>TIGR03198 pucE xanthine dehydrogenase E subunit. This gene has been characterized in B. subtilis as the Iron-sulfur cluster binding-subunit of xanthine dehydrogenase (pucE), acting in conjunction with pucC, the FAD-binding subunit and pucD, the molybdopterin binding subunit. The more common XDH complex (GenProp0640) includes the xdhA gene as the Fe-S cluster binding component.
Probab=99.90 E-value=2.6e-24 Score=210.94 Aligned_cols=89 Identities=33% Similarity=0.609 Sum_probs=82.4
Q ss_pred EEEEEECCEEEEEecCCCCCChHHHHhccCCCccCCCce---------EEEeCccccCC---------------------
Q 002311 13 SVVFAVNGEKFEVSSVDPSTTLLEFLRYHTRFKSVKLGC---------VLVDAEKTHRP--------------------- 62 (937)
Q Consensus 13 ~i~~~~Ng~~~~~~~~~p~~~Ll~~LR~~~~l~g~k~gC---------vl~dg~~~~~~--------------------- 62 (937)
.|+|+|||+++++ +++|+++|++|||++++|+|+|.|| |+|||+++++|
T Consensus 3 ~i~f~vNG~~~~~-~~~~~~~Ll~~LR~~~~ltgtK~gC~~G~CGACtVlvdG~~v~SCl~~~~~~~G~~v~TiEgl~~~ 81 (151)
T TIGR03198 3 QFRFTVNGQAWEV-AAVPTTRLSDLLRKELQLTGTKVSCGIGRCGACSVLIDGKLANACLTMAYQADGHEITTIEGIAEN 81 (151)
T ss_pred cEEEEECCEEEEe-ecCCCcHHHHHHHhccCCCCCCCCCCCCcCCccEEEECCcEEechHHHHHHhcCCEEEecCCcCCC
Confidence 5899999999999 7999999999999999999999999 99999998764
Q ss_pred ------------------CCCCCCC-----------CCCHHHHHHHHhCCcccCCCCHHHHHHHHHHhh
Q 002311 63 ------------------EPPPGFS-----------KLTISEAEKAIAGNLCRCTGYRPIADACKSFAA 102 (937)
Q Consensus 63 ------------------~~~pg~~-----------~p~~~ei~~~l~gnlCRCtgy~~i~~A~~~~~~ 102 (937)
.|||||+ +|+++||+++|+|||||||||++|++|++++++
T Consensus 82 ~l~pvQ~af~~~~a~QCGfCtpG~im~~~~ll~~~p~p~~~ei~~al~gnlCRCtgY~~I~~Av~~~~~ 150 (151)
T TIGR03198 82 ELDPCQTAFLEEGGFQCGYCTPGMVVALKALFRETPQPSDEDMEEGLSGNLCRCTGYGGIIRSACRIRR 150 (151)
T ss_pred CCCHHHHHHHHcCCCcCCCCCccHHHHHHHHHHcCCCCCHHHHHHHHcCCCcCCCCCHHHHHHHHHHhc
Confidence 2689995 689999999999999999999999999998764
No 21
>PRK11433 aldehyde oxidoreductase 2Fe-2S subunit; Provisional
Probab=99.88 E-value=3.6e-23 Score=212.58 Aligned_cols=92 Identities=36% Similarity=0.598 Sum_probs=83.1
Q ss_pred eeEEEEEECCEEEEEecCCCCCChHHHHhccCCCccCCCce---------EEEeCccccCC-------------------
Q 002311 11 RHSVVFAVNGEKFEVSSVDPSTTLLEFLRYHTRFKSVKLGC---------VLVDAEKTHRP------------------- 62 (937)
Q Consensus 11 ~~~i~~~~Ng~~~~~~~~~p~~~Ll~~LR~~~~l~g~k~gC---------vl~dg~~~~~~------------------- 62 (937)
..+|+|+|||+.+++ +++|+++||++||++++|||+|.|| |||||+++++|
T Consensus 49 ~~~i~~~VNG~~~~~-~v~~~~tLLd~LR~~l~ltGtK~GC~~G~CGACTVlVdG~~v~SCl~la~~~~G~~ItTiEGL~ 127 (217)
T PRK11433 49 ISPVTLKVNGKTEQL-EVDTRTTLLDALREHLHLTGTKKGCDHGQCGACTVLVNGRRLNACLTLAVMHQGAEITTIEGLG 127 (217)
T ss_pred CceEEEEECCEEEEE-ecCCCCcHHHHHHHhcCCCCCCCCCCCCCcCceEEEECCEEeeeeeeehhhcCCCEEEEeCCcC
Confidence 357999999999999 7999999999999999999999999 99999988754
Q ss_pred ---------------------CCCCCCC--------------------------CCCHHHHHHHHhCCcccCCCCHHHHH
Q 002311 63 ---------------------EPPPGFS--------------------------KLTISEAEKAIAGNLCRCTGYRPIAD 95 (937)
Q Consensus 63 ---------------------~~~pg~~--------------------------~p~~~ei~~~l~gnlCRCtgy~~i~~ 95 (937)
.|||||+ +|+++||+++|+|||||||||++|++
T Consensus 128 ~~~~lhpvQ~Af~~~~a~QCGyCTPG~imsa~alL~~~~~~~~~~~~~~~~~~p~pt~~eIrealsGNlCRCtgY~~Iv~ 207 (217)
T PRK11433 128 SPDNLHPMQAAFVKHDGFQCGYCTPGQICSSVAVLKEIKDGIPSHVTVDLTAAPELTADEIRERMSGNICRCGAYSNILE 207 (217)
T ss_pred CCCCCCHHHHHHHHcCCCcCCCCCccHHHHHHHHHHhccccCccccccccccCCCCCHHHHHHHHcCCccCCCCcHHHHH
Confidence 2789984 17899999999999999999999999
Q ss_pred HHHHHhhh
Q 002311 96 ACKSFAAD 103 (937)
Q Consensus 96 A~~~~~~~ 103 (937)
||+.++..
T Consensus 208 Av~~~a~~ 215 (217)
T PRK11433 208 AIEDVAGE 215 (217)
T ss_pred HHHHHHhc
Confidence 99988753
No 22
>TIGR02963 xanthine_xdhA xanthine dehydrogenase, small subunit. Members of this protein family are the small subunit (or, in eukaryotes, the N-terminal domain) of xanthine dehydrogenase, an enzyme of purine catabolism via urate. The small subunit contains both an FAD and a 2Fe-2S cofactor. Aldehyde oxidase (retinal oxidase) appears to have arisen as a neofunctionalization among xanthine dehydrogenases in eukaryotes and
Probab=99.81 E-value=1.9e-20 Score=217.77 Aligned_cols=88 Identities=43% Similarity=0.763 Sum_probs=79.7
Q ss_pred EEEEECCEEEEEecCCCCCChHHHHhccCCCccCCCce---------EEE----eC-----ccccCC-------------
Q 002311 14 VVFAVNGEKFEVSSVDPSTTLLEFLRYHTRFKSVKLGC---------VLV----DA-----EKTHRP------------- 62 (937)
Q Consensus 14 i~~~~Ng~~~~~~~~~p~~~Ll~~LR~~~~l~g~k~gC---------vl~----dg-----~~~~~~------------- 62 (937)
|+|+|||+.+++++++|+++|++|||+++||||||.|| |+| || ++|++|
T Consensus 1 i~~~~Ng~~~~~~~~~~~~~ll~~lR~~~~l~g~k~gC~~G~CGaCtv~~~~~~~~~~~~~~~v~sCl~~~~~~~g~~i~ 80 (467)
T TIGR02963 1 IRFFLNGETVTLSDVDPTRTLLDYLREDAGLTGTKEGCAEGDCGACTVVVGELVDGGKLRYRSVNACIQFLPSLDGKAVV 80 (467)
T ss_pred CEEEECCEEEEeecCCCCCCHHHHHHHhcCCCCCCcccCCCCCCceEEEEEecCCCCcccceEEehhhhhHHhcCCCEEE
Confidence 58999999999956999999999999999999999999 999 99 888754
Q ss_pred ----------------------------CCCCCCC-----------CCCHHHHHHHHhCCcccCCCCHHHHHHHHHHh
Q 002311 63 ----------------------------EPPPGFS-----------KLTISEAEKAIAGNLCRCTGYRPIADACKSFA 101 (937)
Q Consensus 63 ----------------------------~~~pg~~-----------~p~~~ei~~~l~gnlCRCtgy~~i~~A~~~~~ 101 (937)
.|||||+ +|+++||+++|+|||||||||++|++|++.++
T Consensus 81 TvEgl~~~~~~l~~~q~a~~~~~~~QCG~CtpG~vm~~~~ll~~~~~~~~~~i~~~l~gnlCRCtgy~~i~~a~~~~~ 158 (467)
T TIGR02963 81 TVEDLRQPDGRLHPVQQAMVECHGSQCGFCTPGFVMSLYALYKNSPAPSRADIEDALQGNLCRCTGYRPILDAAEAAF 158 (467)
T ss_pred ecCCCCCCCCCCCHHHHHHHHcCCCcCCCCchHHHHHHHHHHhcCCCCCHHHHHHHhcCCcccCCCCHHHHHHHHHHH
Confidence 2789985 58999999999999999999999999996554
No 23
>COG4630 XdhA Xanthine dehydrogenase, iron-sulfur cluster and FAD-binding subunit A [Nucleotide transport and metabolism]
Probab=99.79 E-value=8.6e-20 Score=195.69 Aligned_cols=92 Identities=47% Similarity=0.786 Sum_probs=78.6
Q ss_pred eeEEEEEECCEEEEEecCCCCCChHHHHhccCCCccCCCce---------EEE----eCc-----cccCC----------
Q 002311 11 RHSVVFAVNGEKFEVSSVDPSTTLLEFLRYHTRFKSVKLGC---------VLV----DAE-----KTHRP---------- 62 (937)
Q Consensus 11 ~~~i~~~~Ng~~~~~~~~~p~~~Ll~~LR~~~~l~g~k~gC---------vl~----dg~-----~~~~~---------- 62 (937)
...|+|++||+.+.+++++|..|||||||.+.+|||||+|| ||| +|. .|++|
T Consensus 6 ~~~irf~lN~~~~~l~~v~P~~TlLd~LR~d~~ltGtKEGCAEGDCGACTVlVgrl~~g~~l~yeSVNACirfl~sL~G~ 85 (493)
T COG4630 6 RNTIRFLLNGETRVLSDVPPTTTLLDYLRLDRRLTGTKEGCAEGDCGACTVLVGRLVDGGSLRYESVNACIRFLGSLDGT 85 (493)
T ss_pred cceeEEEecCceEEeecCCcchHHHHHHHHhcccccccccccCCCcCceEEEEEeecCCCceeeeehhHHHHHHhhcCCc
Confidence 46899999999999999999999999999889999999999 544 333 11111
Q ss_pred -------------------------------CCCCCCC-----------CCCHHHHHHHHhCCcccCCCCHHHHHHHHHH
Q 002311 63 -------------------------------EPPPGFS-----------KLTISEAEKAIAGNLCRCTGYRPIADACKSF 100 (937)
Q Consensus 63 -------------------------------~~~pg~~-----------~p~~~ei~~~l~gnlCRCtgy~~i~~A~~~~ 100 (937)
+|||||+ .|+++.|.++|.|||||||||++|++|...+
T Consensus 86 hvvTvE~L~~~~g~LHpVQqamvd~hGSQCGfCTPGFVmSLyal~~~~~~P~~a~i~kALqGNLCRCTGY~pI~~AA~~~ 165 (493)
T COG4630 86 HVVTVEHLRGQDGTLHPVQQAMVDFHGSQCGFCTPGFVMSLYALWMNSPTPSRAAIEKALQGNLCRCTGYRPIIRAAEAI 165 (493)
T ss_pred eEEEehhhcCCCCCcCHHHHHHHhccCCccCCcCchHHHHHHHHHhcCCCCchhHHHHHhhCCcccccCchHHHHHHHHH
Confidence 3799996 5899999999999999999999999998876
Q ss_pred hh
Q 002311 101 AA 102 (937)
Q Consensus 101 ~~ 102 (937)
+.
T Consensus 166 ~a 167 (493)
T COG4630 166 AA 167 (493)
T ss_pred hc
Confidence 54
No 24
>COG1529 CoxL Aerobic-type carbon monoxide dehydrogenase, large subunit CoxL/CutL homologs [Energy production and conversion]
Probab=99.44 E-value=4.8e-15 Score=181.99 Aligned_cols=337 Identities=15% Similarity=0.124 Sum_probs=214.5
Q ss_pred hccccCCCCCC-CCccCCcccccccccccccccCCCCCCcEEEEEEecCCCCeEEEEEecCCcC-CCCEEEEEeccCCCc
Q 002311 150 VRLSREYFPVG-EPIPKSGAALQASGEAIFVDDIPSPINCLYGAFVYSTKPLVRIRSVEIKSKS-LPGVSAFLSYKDIPE 227 (937)
Q Consensus 150 ~~~~~~~~~vG-~~~~R~d~~~kvtG~a~Y~~Di~~~pgmL~a~~vrSp~ahArI~sID~s~A~-~pGVvaV~T~~Dip~ 227 (937)
.+.+..+.++| ...++ |+. |+|+.+.|..|.. .++||+..+-+++.--..|.+ |...+. .++++.+.-
T Consensus 176 ~~~~~~~E~~g~~a~~~-d~~-~lt~~~~tQ~~~~-~~~~l~~~l~~p~~~vrvi~~-dvGggfG~K~~~~~~~------ 245 (731)
T COG1529 176 RKDPNPMEPHGVVAVPD-DGD-KLTVWASTQIPHR-LRGMLAAVLGIPPSKVRVISP-DVGGGFGSKGVVYVEE------ 245 (731)
T ss_pred CcCccCcccccceeeEc-CCC-eEEEEEccCCchH-HHHHHHHHhCCCHHHeEEecC-CCCcccCCcccceeHH------
Confidence 45567788899 67788 777 9999999999996 689999999844444344444 777666 666543322
Q ss_pred cCCCccCCCCCCCcccCCCCceeecCCcEEEEEeCCHHHHHHhcccceEEEccCCCCCCcCCHHHHhcCC-CCcccCCcc
Q 002311 228 AGQNIGSRTKFGPEPLFADELTHCAGQPIAFVVADTQKIANRAADLAVVDYDVGNLEPPILSVEEAVGRS-SFFEVPSFL 306 (937)
Q Consensus 228 ~g~~~~~~~~~~~~p~la~~~Vry~G~pVA~VvAet~~~A~~Aa~lI~Vey~~e~L~p~v~d~~~Al~~~-a~~~~~~~~ 306 (937)
+++-....-.|-||.++-..++......-.. +...+..-+...+ .+......
T Consensus 246 ---------------~~~~~aa~~~grpVk~~~tR~e~~~~~~~~~-----------~~~~~~~~~a~~dg~l~~~~~~- 298 (731)
T COG1529 246 ---------------ILAALAAVVAGRPVKWIETREELFVATGHRR-----------ATLIDVKLGADKDGRLLAIKGT- 298 (731)
T ss_pred ---------------HHHHHHHHhcCCCeEEecchHHhhhccCCCC-----------CceEEeeeecCcCCcEEeeeee-
Confidence 1111111122344544433332222110000 0111111111111 11000000
Q ss_pred cccccCC-----hhhhc---ccCCeEEEEEEEEecccccCCccCCceEEEECCCCcEEEEeCCCChHHHHHHHHHHhCCC
Q 002311 307 YPKSVGD-----ISKGM---NEADHKILSAEVKLGSQYYFYMETQTALAVPDEDNCLVVYSSIQCPEYAHATIARCLGIP 378 (937)
Q Consensus 307 ~~~~~Gd-----~e~af---~~A~~vvve~~~~~~~~~h~~mEp~~avA~~~~dg~l~V~~stQ~p~~~r~~lA~~Lglp 378 (937)
.....|+ +...+ ....+. ++..|..++..|..||| ++..+..++. ..||.+...++.||+.|||+
T Consensus 299 ~~~~~Gay~~~~~~~~~~~~~~g~Y~-i~~~~~~~~~v~tn~~p-~~~~Rg~g~~-----~~~~a~E~~~d~lA~~Lgid 371 (731)
T COG1529 299 VAADTGAYNGPTVPAAAAGLARGPYK-IEAVYIEPYLVHTNMPP-NGAYRGAGRP-----EGTFALERAVDELAEELGID 371 (731)
T ss_pred EEecCCCccccchhHHHHHhcCCcee-cccceeeeEEEEcCCCC-CcccccCCCc-----hhHHHHHHHHHHHHHHhCCC
Confidence 0112222 22222 233455 89999999999999999 6666654332 89999999999999999999
Q ss_pred CCcEEEEeccCCCCCC-CCCcccchHHHHHHHHHHhCC---CCEEEEcChhhhhhhcCCCCceE--------EEEEEEEC
Q 002311 379 EHNVRVITRRVGGGFG-GKAIKAMPVATACALAAYKLC---RPVRIYVNRKTDMVMAGGRHPMK--------IEYNVGFK 446 (937)
Q Consensus 379 ~~kVrV~~~~vGGgFG-~K~~~~~~~~~~aAlaA~~~g---RPVk~~~~R~E~~~~~~~R~~~~--------~~~k~g~d 446 (937)
+.+||++...-+|+|| ++-.....+...+..++++.+ ||+|..|+|+++++....+.-.. ...++-++
T Consensus 372 p~eiR~~n~~~~g~~~~~~~~~~~~~~~~~~~~ak~~~~~~~~~k~~~~re~~~~~G~g~a~~~~~~~~~~~~~a~v~~~ 451 (731)
T COG1529 372 PVEIRLRNLIRGGPFGLGRRYDSGDYLEELDEAAKRFGWSERPVKPIWTREGDLRRGVGRAMYTEPSGAGPGEGARVRLE 451 (731)
T ss_pred HHHHhhhhccccCCCCCcccccCccHHHHHHHHHHhcCcccccCChhhhhcCCeeeeeEEEEEEEeccCCCCCcEEEEEc
Confidence 9999999999999999 443323334444556788877 99999999999987533333221 22444556
Q ss_pred CCCcEEEEEEEEEeeCCCCCCCCCchhhh-hhccCCCCccccEEEEEEEeecCCCCCCccCCCChhHHHHHHHHHHHHHH
Q 002311 447 SNGKITALQLNILIDAGQYPDVSPNIPAY-MIGALKKYDWGALHFDIKVCRTNLPSRTAMRAPGEVQGSFIAEAVIEHVA 525 (937)
Q Consensus 447 ~dG~i~A~~~~~~~d~Gay~~~~~~~~~~-~~~~~~~Y~ipn~~~~~~~v~TN~~p~ga~RG~G~pq~~fa~E~~mD~lA 525 (937)
.||+++...... +.+...... .....-.|.||+-+++....-|..++ .++|.+|+..+.|+.|.++++++
T Consensus 452 ~~g~v~v~~g~~--------~~G~G~~t~~~q~~ae~lgip~~~V~v~~gDt~~~~-~~~~s~GS~~~~~~~~A~~~a~~ 522 (731)
T COG1529 452 ADGTVTVRTGAT--------DIGQGTDTVLAQIAAEELGIPPDDVEVVHGDTDVPV-GGWGSVGSRGTAVAGSAVIDAAA 522 (731)
T ss_pred CCCcEEEEECCc--------cCCCcHHHHHHHHHHHHhCCCHHHEEEEecCCCCCC-CCCCCcCcccccchHHHHHHHHH
Confidence 677766543222 222222111 12234678899888888888787554 78999999999999999999999
Q ss_pred HHcCCCHHHHHHhh
Q 002311 526 STLSMEVDFVRSIN 539 (937)
Q Consensus 526 ~~lG~DP~e~R~kN 539 (937)
+..+.||..+|+..
T Consensus 523 ~l~~k~~~~aa~~l 536 (731)
T COG1529 523 KLAEKDPVAAARML 536 (731)
T ss_pred HHHHHHHHHHHhhh
Confidence 99999999999887
No 25
>PF01799 Fer2_2: [2Fe-2S] binding domain; InterPro: IPR002888 The [2Fe-2S] binding domain is found in a range of enzymes including dehydrogenases, oxidases and oxidoreductases. The aldehyde oxido-reductase (Mop) from the sulphate reducing anaerobic Gram-negative bacterium Desulfovibrio gigas is a homodimer of 907 amino acid residues subunits and is a member of the xanthine oxidase family. The protein contains a molybdopterin cofactor (Mo-co) and two different [2Fe-2S] centres. It is folded into four domains of which the first two bind the iron sulphur centres and the last two are involved in Mo-co binding. Mo-co is a molybdenum molybdopterin cytosine dinucleotide. Molybdopterin forms a tricyclic system with the pterin bicycle annealed to a pyran ring. The molybdopterin dinucleotide is deeply buried in the protein. The cis-dithiolene group of the pyran ring binds the molybdenum, which is coordinated by three more (oxygen) ligands [].; GO: 0016491 oxidoreductase activity, 0046872 metal ion binding, 0055114 oxidation-reduction process; PDB: 2E3T_A 1WYG_A 3AN1_B 2E1Q_C 2CKJ_A 3B9J_I 3NVY_J 1FO4_B 3NRZ_J 3AM9_A ....
Probab=99.18 E-value=4.6e-12 Score=110.23 Aligned_cols=37 Identities=49% Similarity=0.895 Sum_probs=30.8
Q ss_pred CCCCCCC-----------CCCHHHHHHHHhCCcccCCCCHHHHHHHHH
Q 002311 63 EPPPGFS-----------KLTISEAEKAIAGNLCRCTGYRPIADACKS 99 (937)
Q Consensus 63 ~~~pg~~-----------~p~~~ei~~~l~gnlCRCtgy~~i~~A~~~ 99 (937)
.|+|||+ +|+++||+++|+|||||||||++|++||+.
T Consensus 28 fCtpG~im~~~~ll~~~~~p~~~ei~~al~gnlCRCTgY~~I~~Av~~ 75 (75)
T PF01799_consen 28 FCTPGMIMAAYALLRRNPDPTEEEIREALSGNLCRCTGYRPIVEAVRQ 75 (75)
T ss_dssp SSHHHHHHHHHHHHHHSSS-CHHHHHHHTTTS--SSSTSHHHHHHHH-
T ss_pred cchHHHHHHHHHHhhcccchhhHHHHHHHHcCccCCCCcHHHHHHHhC
Confidence 5899985 699999999999999999999999999973
No 26
>PF13510 Fer2_4: 2Fe-2S iron-sulfur cluster binding domain; PDB: 1Y56_A 3ADA_A 1VRQ_A 1X31_A 3AD9_A 3AD8_A 3AD7_A 2GAG_A 2GAH_A.
Probab=93.20 E-value=0.15 Score=45.62 Aligned_cols=53 Identities=28% Similarity=0.373 Sum_probs=36.0
Q ss_pred eEEEEEECCEEEEEecCCCCCChHHHHhccCCCc--------------cCCCce----EEEeCcc-ccCCC--CCCCC
Q 002311 12 HSVVFAVNGEKFEVSSVDPSTTLLEFLRYHTRFK--------------SVKLGC----VLVDAEK-THRPE--PPPGF 68 (937)
Q Consensus 12 ~~i~~~~Ng~~~~~~~~~p~~~Ll~~LR~~~~l~--------------g~k~gC----vl~dg~~-~~~~~--~~pg~ 68 (937)
..|+|+|||+++++ .+++||+++|+.. |+. +....| |.|||++ +++|. ..+||
T Consensus 2 ~~v~i~idG~~v~~---~~G~til~al~~~-gi~ip~~c~~~~~r~~~~~~g~C~~C~Vev~g~~~v~AC~t~v~~GM 75 (82)
T PF13510_consen 2 KMVTITIDGKPVEV---PPGETILEALLAA-GIDIPRLCYHGRPRGGLCPIGSCRLCLVEVDGEPNVRACSTPVEDGM 75 (82)
T ss_dssp EEEEEEETTEEEEE---EET-BHHHHHHHT-T--B-EETTTS-EEBSSSSSTT-SS-EEEESSEEEEETTT-B--TTE
T ss_pred CEEEEEECCEEEEE---cCCCHHHHHHHHC-CCeEEEeeeccCcccccCCccccceEEEEECCCcceEcccCCCcCCc
Confidence 37999999999987 4899999999874 221 222344 8999998 77764 34666
No 27
>PRK12386 fumarate reductase iron-sulfur subunit; Provisional
Probab=93.19 E-value=0.076 Score=57.61 Aligned_cols=40 Identities=13% Similarity=0.307 Sum_probs=35.6
Q ss_pred EEEEEecCCCCCChHHHHhccCCC-----ccCCCce---------EEEeCccccCC
Q 002311 21 EKFEVSSVDPSTTLLEFLRYHTRF-----KSVKLGC---------VLVDAEKTHRP 62 (937)
Q Consensus 21 ~~~~~~~~~p~~~Ll~~LR~~~~l-----~g~k~gC---------vl~dg~~~~~~ 62 (937)
+.+++ +++++++||++||+ ++. ++.|.|| |+|||+++.+|
T Consensus 20 q~y~v-~~~~~~tvLd~L~~-i~~~~d~~l~~r~~C~~g~CGsCa~~InG~p~laC 73 (251)
T PRK12386 20 QDYTV-EVNEGEVVLDVIHR-LQATQAPDLAVRWNCKAGKCGSCSAEINGRPRLMC 73 (251)
T ss_pred EEEEE-eCCCCCCHHHHHHH-hccccCCCCcccCCCCCCcCCCCEEEECccEeccH
Confidence 66888 69999999999998 777 4999999 99999999876
No 28
>TIGR03194 4hydrxCoA_A 4-hydroxybenzoyl-CoA reductase, alpha subunit. This model represents the largest chain, alpha, of the enzyme 4-hydroxybenzoyl-CoA reductase. In species capable of degrading various aromatic compounds by way of benzoyl-CoA, this enzyme can convert 4-hydroxybenzoyl-CoA to benzoyl-CoA.
Probab=90.16 E-value=1.8 Score=54.44 Aligned_cols=59 Identities=19% Similarity=0.219 Sum_probs=45.7
Q ss_pred ccCCceEEEECCCCcEEEEeCCCCh-----HHHHHHHHHHhCCCCCcEEEEecc------CCCCCCCCCc
Q 002311 340 METQTALAVPDEDNCLVVYSSIQCP-----EYAHATIARCLGIPEHNVRVITRR------VGGGFGGKAI 398 (937)
Q Consensus 340 mEp~~avA~~~~dg~l~V~~stQ~p-----~~~r~~lA~~Lglp~~kVrV~~~~------vGGgFG~K~~ 398 (937)
..+.++....++||.++|+++++.. ..+++.+|+.||+|.++|+|...+ -+|.+|++..
T Consensus 442 ~~~~~a~v~l~~dG~v~v~~g~~e~GqG~~T~~~qiaAe~LGip~d~V~v~~~DT~~~p~~~gt~~Sr~t 511 (746)
T TIGR03194 442 EPHATVALKLDFDGGITLLTGAADIGQGSSTIASQVAAEVLGVRLSRIRVISADSALTPKDNGSYSSRVT 511 (746)
T ss_pred CCCceEEEEEcCCccEEEEEcCCCCCCCHHHHHHHHHHHHhCCCHHhEEEEccCCCCCCCCCCChhHhHH
Confidence 3356777778889999999887544 456777899999999999999765 4677787753
No 29
>PF00111 Fer2: 2Fe-2S iron-sulfur cluster binding domain; InterPro: IPR001041 The ferredoxin protein family are electron carrier proteins with an iron-sulphur cofactor that act in a wide variety of metabolic reactions. Ferredoxins can be divided into several subgroups depending upon the physiological nature of the iron-sulphur cluster(s) and according to sequence similarities. This entry represents members of the 2Fe-2S ferredoxin family that have a general core structure consisting of beta(2)-alpha-beta(2), which includes putidaredoxin and terpredoxin, and adrenodoxin [, , , ]. They are proteins of around one hundred amino acids with four conserved cysteine residues to which the 2Fe-2S cluster is ligated. This conserved region is also found as a domain in various metabolic enzymes and in multidomain proteins, such as aldehyde oxidoreductase (N-terminal), xanthine oxidase (N-terminal), phthalate dioxygenase reductase (C-terminal), succinate dehydrogenase iron-sulphur protein (N-terminal), and methane monooxygenase reductase (N-terminal).; GO: 0009055 electron carrier activity, 0051536 iron-sulfur cluster binding; PDB: 3M9S_C 2FUG_L 3IAS_L 2YBB_3 3IAM_3 3I9V_3 1JQ4_A 1DOX_A 1DOY_A 2KAJ_A ....
Probab=87.34 E-value=0.6 Score=40.85 Aligned_cols=34 Identities=29% Similarity=0.517 Sum_probs=28.5
Q ss_pred EEECCEEEEEecCCCCCC-hHHHHhccCCCccCCCce
Q 002311 16 FAVNGEKFEVSSVDPSTT-LLEFLRYHTRFKSVKLGC 51 (937)
Q Consensus 16 ~~~Ng~~~~~~~~~p~~~-Ll~~LR~~~~l~g~k~gC 51 (937)
+++||+.+++ ++.++++ ||++|++..+ ..+..+|
T Consensus 1 i~i~g~~~~~-~~~~~~~~ll~~~~~~~g-i~i~~~C 35 (78)
T PF00111_consen 1 ITINGKGVTV-EVPPGETLLLDALERAGG-IGIPYSC 35 (78)
T ss_dssp EETTTEEEEE-EEETTSBBHHHHHHHTTT-TTSTTSS
T ss_pred CEECCeEEEE-EeCCCccHHHHHHHHcCC-CCcccCC
Confidence 5799999999 6999999 9999997424 4888888
No 30
>PRK07440 hypothetical protein; Provisional
Probab=85.37 E-value=1.6 Score=37.76 Aligned_cols=44 Identities=25% Similarity=0.302 Sum_probs=33.8
Q ss_pred eeEEEEEECCEEEEEecCCCCCChHHHHhccCCCccCCCce-EEEeCcccc
Q 002311 11 RHSVVFAVNGEKFEVSSVDPSTTLLEFLRYHTRFKSVKLGC-VLVDAEKTH 60 (937)
Q Consensus 11 ~~~i~~~~Ng~~~~~~~~~p~~~Ll~~LR~~~~l~g~k~gC-vl~dg~~~~ 60 (937)
+..++++|||+.+++ ..+.||.++|+. +++ ...++ |-+||+-++
T Consensus 2 ~~~m~i~vNG~~~~~---~~~~tl~~lL~~-l~~--~~~~vav~~N~~iv~ 46 (70)
T PRK07440 2 SNPITLQVNGETRTC---SSGTSLPDLLQQ-LGF--NPRLVAVEYNGEILH 46 (70)
T ss_pred CCceEEEECCEEEEc---CCCCCHHHHHHH-cCC--CCCeEEEEECCEEeC
Confidence 346899999999876 467899999974 576 34566 788888775
No 31
>COG2104 ThiS Sulfur transfer protein involved in thiamine biosynthesis [Coenzyme metabolism]
Probab=84.27 E-value=1.8 Score=37.43 Aligned_cols=44 Identities=25% Similarity=0.400 Sum_probs=34.5
Q ss_pred eEEEEEECCEEEEEecCCCCCChHHHHhccCCCccCCCce-EEEeCccccC
Q 002311 12 HSVVFAVNGEKFEVSSVDPSTTLLEFLRYHTRFKSVKLGC-VLVDAEKTHR 61 (937)
Q Consensus 12 ~~i~~~~Ng~~~~~~~~~p~~~Ll~~LR~~~~l~g~k~gC-vl~dg~~~~~ 61 (937)
+.+++.+||+++++ +..+||.|+|++ +++.. .++ |.+||+.+++
T Consensus 1 ~~m~i~~ng~~~e~---~~~~tv~dLL~~-l~~~~--~~vav~vNg~iVpr 45 (68)
T COG2104 1 MPMTIQLNGKEVEI---AEGTTVADLLAQ-LGLNP--EGVAVAVNGEIVPR 45 (68)
T ss_pred CcEEEEECCEEEEc---CCCCcHHHHHHH-hCCCC--ceEEEEECCEEccc
Confidence 46789999999976 345999999975 57633 677 8899998873
No 32
>PRK06083 sulfur carrier protein ThiS; Provisional
Probab=84.06 E-value=2.1 Score=38.51 Aligned_cols=47 Identities=17% Similarity=0.374 Sum_probs=36.1
Q ss_pred cCCeeEEEEEECCEEEEEecCCCCCChHHHHhccCCCccCCCce-EEEeCcccc
Q 002311 8 RGTRHSVVFAVNGEKFEVSSVDPSTTLLEFLRYHTRFKSVKLGC-VLVDAEKTH 60 (937)
Q Consensus 8 ~~~~~~i~~~~Ng~~~~~~~~~p~~~Ll~~LR~~~~l~g~k~gC-vl~dg~~~~ 60 (937)
....+.++++|||+.+++ +.+.+|.++|.. +++ ...++ |-+||+-++
T Consensus 13 ~~~~~~m~I~VNG~~~~~---~~~~tl~~LL~~-l~~--~~~~vAVevNg~iVp 60 (84)
T PRK06083 13 GAAMVLITISINDQSIQV---DISSSLAQIIAQ-LSL--PELGCVFAINNQVVP 60 (84)
T ss_pred CCCCceEEEEECCeEEEc---CCCCcHHHHHHH-cCC--CCceEEEEECCEEeC
Confidence 444568899999999876 467899999974 565 35677 788998765
No 33
>PRK08364 sulfur carrier protein ThiS; Provisional
Probab=81.98 E-value=2.4 Score=36.65 Aligned_cols=45 Identities=16% Similarity=0.210 Sum_probs=34.4
Q ss_pred EEEEEECCE--EEEEecCCCCCChHHHHhccCCCccCCCce-EEEeCccccC
Q 002311 13 SVVFAVNGE--KFEVSSVDPSTTLLEFLRYHTRFKSVKLGC-VLVDAEKTHR 61 (937)
Q Consensus 13 ~i~~~~Ng~--~~~~~~~~p~~~Ll~~LR~~~~l~g~k~gC-vl~dg~~~~~ 61 (937)
.+++++||+ +.++ ++++++|+.++|+ ++++. ..+| |.+||+.+..
T Consensus 4 mm~v~vng~~~~~~~-~~~~~~tv~~ll~-~l~~~--~~~v~v~vNg~iv~~ 51 (70)
T PRK08364 4 MIRVKVIGRGIEKEI-EWRKGMKVADILR-AVGFN--TESAIAKVNGKVALE 51 (70)
T ss_pred EEEEEEeccccceEE-EcCCCCcHHHHHH-HcCCC--CccEEEEECCEECCC
Confidence 389999999 5555 4678899999996 46774 3667 8899998753
No 34
>cd00207 fer2 2Fe-2S iron-sulfur cluster binding domain. Iron-sulfur proteins play an important role in electron transfer processes and in various enzymatic reactions. The family includes plant and algal ferredoxins, which act as electron carriers in photosynthesis and ferredoxins, which participate in redox chains (from bacteria to mammals). Fold is ismilar to thioredoxin.
Probab=80.70 E-value=1.3 Score=39.09 Aligned_cols=35 Identities=31% Similarity=0.470 Sum_probs=29.4
Q ss_pred EEEEECCEEEEEecCCCCCChHHHHhccCCCccCCCce
Q 002311 14 VVFAVNGEKFEVSSVDPSTTLLEFLRYHTRFKSVKLGC 51 (937)
Q Consensus 14 i~~~~Ng~~~~~~~~~p~~~Ll~~LR~~~~l~g~k~gC 51 (937)
|+|+.||..+++ +++++++||++|++ .|+. +..+|
T Consensus 1 v~~~~~~~~~~~-~~~~g~~ll~al~~-~g~~-~~~~C 35 (84)
T cd00207 1 VTINVPGSGVEV-EVPEGETLLDAARE-AGID-IPYSC 35 (84)
T ss_pred CEEecCCCCEEE-EECCCCcHHHHHHH-cCCC-cccCC
Confidence 478898888888 68999999999998 5775 77887
No 35
>TIGR02416 CO_dehy_Mo_lg carbon-monoxide dehydrogenase, large subunit. This model represents the large subunits of group of carbon-monoxide dehydrogenases that include molybdenum as part of the enzymatic cofactor. There are various forms of carbon-monoxide dehydrogenase; Salicibacter pomeroyi DSS-3, for example, has two forms. Note that, at least in some species, the active site Cys is modified with a selenium attached to (rather than replacing) the sulfur atom. This is termed selanylcysteine, and created post-translationally, in contrast to selenocysteine incorporation during translation as for many other selenoproteins.
Probab=78.82 E-value=4.3 Score=51.42 Aligned_cols=70 Identities=21% Similarity=0.227 Sum_probs=50.1
Q ss_pred CceEEEECCCCcEEEEeCCCCh-----HHHHHHHHHHhCCCCCcEEEEecc------CCCCCCCCCcccchHHHHHHHHH
Q 002311 343 QTALAVPDEDNCLVVYSSIQCP-----EYAHATIARCLGIPEHNVRVITRR------VGGGFGGKAIKAMPVATACALAA 411 (937)
Q Consensus 343 ~~avA~~~~dg~l~V~~stQ~p-----~~~r~~lA~~Lglp~~kVrV~~~~------vGGgFG~K~~~~~~~~~~aAlaA 411 (937)
..+....++||.++|+++++.. ..+.+.+|+.||+|.++|+|+..+ -+|.||++... ..-.++-.||
T Consensus 476 ~~a~v~l~~dG~v~v~~g~~e~GQG~~T~~aQiaAe~LGip~e~V~v~~~DT~~~p~~~gt~~Sr~t~--~~G~Av~~Aa 553 (770)
T TIGR02416 476 DSCEIRIHPTGSAIARMGTKSQGQGHETTYAQIIATELGIPAEDIMVEEGDTDTAPYGLGTYGSRSTP--VAGAATALAA 553 (770)
T ss_pred ceEEEEECCCceEEEEECCCCCCCCchHHHHHHHHHHHCCCHHHEEEEecCCCCCCCCCCCchhHHHH--HHHHHHHHHH
Confidence 4577778888999999998654 455677889999999999999654 46788888642 2233334455
Q ss_pred HhC
Q 002311 412 YKL 414 (937)
Q Consensus 412 ~~~ 414 (937)
.++
T Consensus 554 ~~l 556 (770)
T TIGR02416 554 RKI 556 (770)
T ss_pred HHH
Confidence 555
No 36
>PRK05863 sulfur carrier protein ThiS; Provisional
Probab=78.62 E-value=3.4 Score=35.19 Aligned_cols=41 Identities=34% Similarity=0.388 Sum_probs=31.6
Q ss_pred EEEEECCEEEEEecCCCCCChHHHHhccCCCccCCCce-EEEeCcccc
Q 002311 14 VVFAVNGEKFEVSSVDPSTTLLEFLRYHTRFKSVKLGC-VLVDAEKTH 60 (937)
Q Consensus 14 i~~~~Ng~~~~~~~~~p~~~Ll~~LR~~~~l~g~k~gC-vl~dg~~~~ 60 (937)
++++|||+++++ +++.||.++|.. +++ ...++ |.+|++-++
T Consensus 1 m~i~vNG~~~~~---~~~~tl~~ll~~-l~~--~~~~vav~~N~~iv~ 42 (65)
T PRK05863 1 MIVVVNEEQVEV---DEQTTVAALLDS-LGF--PEKGIAVAVDWSVLP 42 (65)
T ss_pred CEEEECCEEEEc---CCCCcHHHHHHH-cCC--CCCcEEEEECCcCcC
Confidence 478999999977 367899999975 676 45577 788888654
No 37
>TIGR02965 xanthine_xdhB xanthine dehydrogenase, molybdopterin binding subunit. Members of the protein family are the molybdopterin-containing large subunit (or, in, eukaryotes, the molybdopterin-binding domain) of xanthine dehydrogenase, and enzyme that reduces the purine pool by catabolizing xanthine to urate. This model is based primarily on bacterial sequences; it does not manage to include all eukaryotic xanthine dehydrogenases and thereby discriminate them from the closely related enzyme aldehyde dehydrogenase.
Probab=76.98 E-value=3.7 Score=51.93 Aligned_cols=59 Identities=8% Similarity=0.036 Sum_probs=45.4
Q ss_pred ccCCceEEEECCCCcEEEEeCCCCh-----HHHHHHHHHHhCCCCCcEEEEe------ccCCCCCCCCCc
Q 002311 340 METQTALAVPDEDNCLVVYSSIQCP-----EYAHATIARCLGIPEHNVRVIT------RRVGGGFGGKAI 398 (937)
Q Consensus 340 mEp~~avA~~~~dg~l~V~~stQ~p-----~~~r~~lA~~Lglp~~kVrV~~------~~vGGgFG~K~~ 398 (937)
+.+..+....++||+++|+++++.. ..+.+.+|+.||+|.++|+|.. |+.+|.+|++..
T Consensus 445 ~~~~~a~v~i~~dG~v~v~~g~~e~GQG~~T~laQIaAe~LGi~~d~V~v~~~DT~~~p~~~gT~gSr~t 514 (758)
T TIGR02965 445 LNQAGALVHVYTDGSIHLNHGGTEMGQGLNTKVAQVVAEEFQVDIDRVKITATDTDKVPNTSATAASSGS 514 (758)
T ss_pred cCccceEEEEeCCCcEEEEECCCCCCCCHHHHHHHHHHHHhCCCHHHEEEEecCccCCCCCCCCchHHHH
Confidence 3455677777888999999998653 3456667889999999999985 455677888864
No 38
>PRK09970 xanthine dehydrogenase subunit XdhA; Provisional
Probab=76.75 E-value=5.8 Score=50.23 Aligned_cols=60 Identities=23% Similarity=0.295 Sum_probs=48.1
Q ss_pred CccCCceEEEECCCCcEEEEeCCC----Ch-HHHHHHHHHHhCCCCCcEEEEe-------ccCCCCCCCCCc
Q 002311 339 YMETQTALAVPDEDNCLVVYSSIQ----CP-EYAHATIARCLGIPEHNVRVIT-------RRVGGGFGGKAI 398 (937)
Q Consensus 339 ~mEp~~avA~~~~dg~l~V~~stQ----~p-~~~r~~lA~~Lglp~~kVrV~~-------~~vGGgFG~K~~ 398 (937)
.++...+....++||.++|++++. .. ..+.+.+|+.||+|.++|+|+. |+-+|.||++..
T Consensus 457 ~~~~~~a~v~i~~dGsv~v~~g~~e~GQG~~T~~aQiaAe~LGi~~~~V~v~~~~dT~~~p~~~gt~aSr~t 528 (759)
T PRK09970 457 GLEIAGARLLMNQDGTVQVQSGATEIGQGSDTVFSQMVAETVGIPVSDVRVISTQDTDVTPFDPGAYASRQS 528 (759)
T ss_pred CCCcceEEEEEccCceEEEEECCCCcCCCHHHHHHHHHHHHhCCCHHhEEEEccCCCCCCCCCCCCchhhhH
Confidence 366777888888899999999984 33 4567778899999999999994 456788999864
No 39
>TIGR03313 Se_sel_red_Mo probable selenate reductase, molybdenum-binding subunit. Our comparative genomics suggests this protein family to be a subunit of a selenium-dependent molybdenum hydroxylase, although the substrate is not specified. This protein is suggested by Bebien, et al., to be the molybdenum-binding subunit of a molydbopterin-containing selenate reductase. Xi, et al, however, show that mutation of this gene in E. coli conferred sensitivity to adenine, suggesting a defect in purine interconversion. This finding, plus homology of nearby genes in a 23-gene purine catabolism region in E. coli to xanthine dehydrogase subunits suggests xanthine dehydrogenase activity.
Probab=76.14 E-value=4.6 Score=52.23 Aligned_cols=59 Identities=17% Similarity=0.225 Sum_probs=47.7
Q ss_pred ccCCceEEEECCCCcEEEEeCCCCh-----HHHHHHHHHHhCCCCCcEEEEecc------CCCCCCCCCc
Q 002311 340 METQTALAVPDEDNCLVVYSSIQCP-----EYAHATIARCLGIPEHNVRVITRR------VGGGFGGKAI 398 (937)
Q Consensus 340 mEp~~avA~~~~dg~l~V~~stQ~p-----~~~r~~lA~~Lglp~~kVrV~~~~------vGGgFG~K~~ 398 (937)
+++..+....++||.++|+++++.. ..+.+.+|+.||+|.++|+|+..+ -+|.||++..
T Consensus 658 ~~~~~a~v~l~~dG~v~v~~g~~e~GqG~~T~~~QiaAe~LGvp~d~V~v~~~DT~~~p~~~gt~aSr~t 727 (951)
T TIGR03313 658 IDQANCMIKLESDGTFIVHSGGADIGTGLDTVVSKLTAEVLHCPMDDVHVISGDTDHALFDKGAYASSGT 727 (951)
T ss_pred CCCccEEEEEcCCceEEEEECCCCCCccHHHHHHHHHHHHHCCCHHhEEEEeCCCCCCCCCCCCcHHHHH
Confidence 4566777788889999999999844 566778899999999999999744 4678888864
No 40
>PRK09800 putative hypoxanthine oxidase; Provisional
Probab=76.02 E-value=5.9 Score=51.20 Aligned_cols=59 Identities=17% Similarity=0.220 Sum_probs=47.2
Q ss_pred ccCCceEEEECCCCcEEEEeCCCCh-----HHHHHHHHHHhCCCCCcEEEEec------cCCCCCCCCCc
Q 002311 340 METQTALAVPDEDNCLVVYSSIQCP-----EYAHATIARCLGIPEHNVRVITR------RVGGGFGGKAI 398 (937)
Q Consensus 340 mEp~~avA~~~~dg~l~V~~stQ~p-----~~~r~~lA~~Lglp~~kVrV~~~------~vGGgFG~K~~ 398 (937)
+++..+....+.||.++|+++++-. ..+.+.+|+.||+|.++|+|+.. +-+|.||++..
T Consensus 662 ~~~~~a~v~l~~dGsv~v~~g~~e~GqG~~T~~~QiaAe~LGip~d~V~v~~~DT~~~p~~~gt~aSr~t 731 (956)
T PRK09800 662 IDQANCMIKLESDGTFIVHSGGADIGTGLDTVVTKLAAEVLHCPPQDVHVISGDTDHALFDKGAYASSGT 731 (956)
T ss_pred CCCceEEEEECCCceEEEEECCCCCCccHHHHHHHHHHHHHCCCceeEEEEeCCCCCCCCCCCcchhhhH
Confidence 4566677777889999999998744 55677789999999999999964 45778888864
No 41
>PRK05950 sdhB succinate dehydrogenase iron-sulfur subunit; Reviewed
Probab=75.22 E-value=2.6 Score=45.30 Aligned_cols=41 Identities=17% Similarity=0.257 Sum_probs=32.4
Q ss_pred EEEEEecCC-CCCChHHHHhccC----CCccCCCce---------EEEeCccccCC
Q 002311 21 EKFEVSSVD-PSTTLLEFLRYHT----RFKSVKLGC---------VLVDAEKTHRP 62 (937)
Q Consensus 21 ~~~~~~~~~-p~~~Ll~~LR~~~----~l~g~k~gC---------vl~dg~~~~~~ 62 (937)
+.+++ +++ +++|||++||... ...+.+.|| |.|||+++.+|
T Consensus 18 ~~~~v-~~~~~~~tvl~~L~~~~~~~~~~l~~~~~c~~g~Cg~C~v~vnG~~~laC 72 (232)
T PRK05950 18 QTYEV-DVDECGPMVLDALIKIKNEIDPTLTFRRSCREGVCGSDAMNINGKNGLAC 72 (232)
T ss_pred EEEEe-CCCCCCCHHHHHHHHhCCccCCcceeeCCCCCCCCCCCEEEECCcCccch
Confidence 45667 688 9999999999853 356778887 89999998765
No 42
>PRK08053 sulfur carrier protein ThiS; Provisional
Probab=73.73 E-value=5.6 Score=33.91 Aligned_cols=41 Identities=12% Similarity=0.225 Sum_probs=31.7
Q ss_pred EEEEECCEEEEEecCCCCCChHHHHhccCCCccCCCce-EEEeCcccc
Q 002311 14 VVFAVNGEKFEVSSVDPSTTLLEFLRYHTRFKSVKLGC-VLVDAEKTH 60 (937)
Q Consensus 14 i~~~~Ng~~~~~~~~~p~~~Ll~~LR~~~~l~g~k~gC-vl~dg~~~~ 60 (937)
++++|||+++++ +.+.||.++|.. +++ ...+| |-+|++-++
T Consensus 1 m~i~vNg~~~~~---~~~~tl~~ll~~-l~~--~~~~vaVavN~~iv~ 42 (66)
T PRK08053 1 MQILFNDQPMQC---AAGQTVHELLEQ-LNQ--LQPGAALAINQQIIP 42 (66)
T ss_pred CEEEECCeEEEc---CCCCCHHHHHHH-cCC--CCCcEEEEECCEEeC
Confidence 478999999987 357899999964 565 35678 788998775
No 43
>PF02738 Ald_Xan_dh_C2: Molybdopterin-binding domain of aldehyde dehydrogenase; InterPro: IPR008274 Aldehyde oxidase (1.2.3.1 from EC) catalyses the conversion of an aldehyde in the presence of oxygen and water to an acid and hydrogen peroxide. The enzyme is a homodimer, and requires FAD, molybdenum and two 2FE-2S clusters as cofactors. Xanthine dehydrogenase (1.1.1.204 from EC) catalyses the hydrogenation of xanthine to urate, and also requires FAD, molybdenum and two 2FE-2S clusters as cofactors. This activity is often found in a bifunctional enzyme with xanthine oxidase (1.1.3.22 from EC) activity too. The enzyme can be converted from the dehydrogenase form to the oxidase form irreversibly by proteolysis or reversibly through oxidation of sulphydryl groups.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3NVZ_C 3NVY_C 1FO4_B 3NRZ_L 3AM9_A 3B9J_C 3AX7_B 3NVW_L 3BDJ_A 3ETR_N ....
Probab=73.63 E-value=10 Score=46.00 Aligned_cols=56 Identities=27% Similarity=0.091 Sum_probs=39.5
Q ss_pred CCceEEEEccCCcEEEEeccccccccHHHHHHHHHHHHhcccccCCCCCCCCcEEEecCCCccccCCCCCcccch
Q 002311 609 STPGKVSILSDGSVVVEVGGIELGQGLWTKVKQMAAFALSSIQCGGMGDLLETVRVIQADTLSVIQGGLTAGSTK 683 (937)
Q Consensus 609 ~~~a~v~l~~DG~v~v~~g~~e~GqG~~T~~aqiaAe~Lgi~~~~~~~~~~~~I~v~~~dT~~~p~~~~t~aSr~ 683 (937)
|..+....++||.++|+++++.. ..+.+.+|+.||+ |+++|+|.. |+-+|++|++.
T Consensus 50 p~~~~A~~~~~g~l~v~~~tQ~p-----~~~r~~va~~lgl--------p~~~V~V~~------~~~GGgFG~~~ 105 (547)
T PF02738_consen 50 PHGAVAWWDEDGRLTVWSSTQWP-----FHVRRAVAEALGL--------PPEKVRVIS------PYVGGGFGKKK 105 (547)
T ss_dssp -SEEEEEEETTTEEEEEES-SSH-----HHHHHHHHHHHTS---------GGGEEEEE------SB-S--TTTTS
T ss_pred CCeEEEEEccCCCEEEEECCcCH-----hHHHHHHhhhhcC--------ChhHEEEee------eecCCCCCCcc
Confidence 56777777889999999987642 3466788999999 999999985 45578888443
No 44
>TIGR01683 thiS thiamine biosynthesis protein ThiS. This model represents ThiS, a small thiamine-biosynthesis protein related to MoaD, a molybdenum cofactor biosynthesis protein. Both proteins are involved in sulfur transfer. ThiS has a conserved Gly-Gly C-terminus that is modified, in reactions requiring ThiI, ThiF, IscS, and a sulfur atom from Cys, into the thiocarboxylate that provides the sulfur for thiazole biosynthesis.
Probab=72.39 E-value=4.8 Score=34.00 Aligned_cols=39 Identities=31% Similarity=0.356 Sum_probs=30.2
Q ss_pred EEECCEEEEEecCCCCCChHHHHhccCCCccCCCce-EEEeCcccc
Q 002311 16 FAVNGEKFEVSSVDPSTTLLEFLRYHTRFKSVKLGC-VLVDAEKTH 60 (937)
Q Consensus 16 ~~~Ng~~~~~~~~~p~~~Ll~~LR~~~~l~g~k~gC-vl~dg~~~~ 60 (937)
++|||+.+++ +.+.||.++|.. +++. ..+| |.+||+.+.
T Consensus 1 i~iNg~~~~~---~~~~tv~~ll~~-l~~~--~~~v~v~vN~~iv~ 40 (64)
T TIGR01683 1 ITVNGEPVEV---EDGLTLAALLES-LGLD--PRRVAVAVNGEIVP 40 (64)
T ss_pred CEECCeEEEc---CCCCcHHHHHHH-cCCC--CCeEEEEECCEEcC
Confidence 4799999977 357899999974 6765 3666 889998774
No 45
>PRK05659 sulfur carrier protein ThiS; Validated
Probab=72.20 E-value=5.6 Score=33.67 Aligned_cols=41 Identities=20% Similarity=0.221 Sum_probs=29.8
Q ss_pred EEEEECCEEEEEecCCCCCChHHHHhccCCCccCCCce-EEEeCcccc
Q 002311 14 VVFAVNGEKFEVSSVDPSTTLLEFLRYHTRFKSVKLGC-VLVDAEKTH 60 (937)
Q Consensus 14 i~~~~Ng~~~~~~~~~p~~~Ll~~LR~~~~l~g~k~gC-vl~dg~~~~ 60 (937)
++++|||+.+++ ..+.||.++|.. +++.. ..+ |.+||+-++
T Consensus 1 m~i~vNG~~~~~---~~~~tl~~lL~~-l~~~~--~~vav~vNg~iv~ 42 (66)
T PRK05659 1 MNIQLNGEPREL---PDGESVAALLAR-EGLAG--RRVAVEVNGEIVP 42 (66)
T ss_pred CEEEECCeEEEc---CCCCCHHHHHHh-cCCCC--CeEEEEECCeEeC
Confidence 368999999876 467899999964 67633 344 678886554
No 46
>cd00565 ThiS ThiaminS ubiquitin-like sulfur carrier protein. ThiS (ThiaminS) is a sulfur carrier protein involved in thiamin biosynthesis in bacteria. The ThiS fold, like those of two closely related proteins MoaD and Urm1, is similar to that of ubiquitin although there is little or no sequence similarity.
Probab=71.12 E-value=5.9 Score=33.56 Aligned_cols=41 Identities=34% Similarity=0.425 Sum_probs=30.8
Q ss_pred EEEECCEEEEEecCCCCCChHHHHhccCCCccCCCce-EEEeCccccC
Q 002311 15 VFAVNGEKFEVSSVDPSTTLLEFLRYHTRFKSVKLGC-VLVDAEKTHR 61 (937)
Q Consensus 15 ~~~~Ng~~~~~~~~~p~~~Ll~~LR~~~~l~g~k~gC-vl~dg~~~~~ 61 (937)
.++|||+.+++ +.+.|+.++|.. +++. +.+| |.+||+.+..
T Consensus 1 ~i~iNg~~~~~---~~~~tv~~ll~~-l~~~--~~~i~V~vNg~~v~~ 42 (65)
T cd00565 1 KITVNGEPREV---EEGATLAELLEE-LGLD--PRGVAVALNGEIVPR 42 (65)
T ss_pred CEEECCeEEEc---CCCCCHHHHHHH-cCCC--CCcEEEEECCEEcCH
Confidence 37899999977 357899999964 5653 4567 8899987753
No 47
>PRK06944 sulfur carrier protein ThiS; Provisional
Probab=70.92 E-value=6 Score=33.35 Aligned_cols=40 Identities=13% Similarity=0.130 Sum_probs=30.4
Q ss_pred EEEEECCEEEEEecCCCCCChHHHHhccCCCccCCCce-EEEeCcccc
Q 002311 14 VVFAVNGEKFEVSSVDPSTTLLEFLRYHTRFKSVKLGC-VLVDAEKTH 60 (937)
Q Consensus 14 i~~~~Ng~~~~~~~~~p~~~Ll~~LR~~~~l~g~k~gC-vl~dg~~~~ 60 (937)
++++|||+.+++ +++.||.++|. ++++. ... |.+||+-+.
T Consensus 1 m~i~vNg~~~~~---~~~~tl~~ll~-~l~~~---~~~~v~vN~~~v~ 41 (65)
T PRK06944 1 MDIQLNQQTLSL---PDGATVADALA-AYGAR---PPFAVAVNGDFVA 41 (65)
T ss_pred CEEEECCEEEEC---CCCCcHHHHHH-hhCCC---CCeEEEECCEEcC
Confidence 368999999876 46789999996 45663 456 788998765
No 48
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=68.21 E-value=9.7 Score=47.39 Aligned_cols=53 Identities=17% Similarity=0.298 Sum_probs=38.6
Q ss_pred EEEEEECCEEEEEecCCCCCChHHHHhccCCCccC----------CCce----EEEeCcc--ccCCC--CCCCCC
Q 002311 13 SVVFAVNGEKFEVSSVDPSTTLLEFLRYHTRFKSV----------KLGC----VLVDAEK--THRPE--PPPGFS 69 (937)
Q Consensus 13 ~i~~~~Ng~~~~~~~~~p~~~Ll~~LR~~~~l~g~----------k~gC----vl~dg~~--~~~~~--~~pg~~ 69 (937)
.|+|+|||+++++ .+++||+++|+.. |+.-. ...| |.|||++ +.+|. ..+||.
T Consensus 3 ~v~~~idg~~~~~---~~g~ti~~a~~~~-g~~ip~~c~~~~~~~~g~C~~C~V~v~g~~~~~~aC~t~~~~Gm~ 73 (652)
T PRK12814 3 TISLTINGRSVTA---APGTSILEAAASA-GITIPTLCFHQELEATGSCWMCIVEIKGKNRFVPACSTAVSEGMV 73 (652)
T ss_pred eEEEEECCEEEEe---CCcCcHHHHHHHc-CCccccccCCCCCCCccccceeEEEECCCcceecCcCCCCCCCCE
Confidence 6899999998875 5899999999975 43311 1234 8899965 56664 468995
No 49
>TIGR03196 pucD xanthine dehydrogenase D subunit. This gene has been characterized in B. subtilis as the molybdopterin binding-subunit of xanthine dehydrogenase (pucD), acting in conjunction with pucC, the FAD-binding subunit and pucE, the FeS-binding subunit. The more common XDH complex (GenProp0640) includes the xdhB gene which is related to pucD. It appears that most of the relatives of pucD outside of this narrow clade are involved in other processes as they are found in unrelated genomic contexts, contain the more common XDH complex and/or do not appear to process purines to allantoin.
Probab=67.63 E-value=12 Score=47.41 Aligned_cols=59 Identities=14% Similarity=0.065 Sum_probs=45.8
Q ss_pred CCceEEEEccCCcEEEEeccccccccHHHHHHHHHHHHhcccccCCCCCCCCcEEEecCCCccccCCCCCcccchhhh
Q 002311 609 STPGKVSILSDGSVVVEVGGIELGQGLWTKVKQMAAFALSSIQCGGMGDLLETVRVIQADTLSVIQGGLTAGSTKSEA 686 (937)
Q Consensus 609 ~~~a~v~l~~DG~v~v~~g~~e~GqG~~T~~aqiaAe~Lgi~~~~~~~~~~~~I~v~~~dT~~~p~~~~t~aSr~t~~ 686 (937)
+..+....++||+++|+++++.. ..+...+|..||+ |.++|+|.. |+-+|.+|++....
T Consensus 184 p~~~~A~~~~~g~l~v~~stQ~p-----~~~r~~lA~~Lgl--------p~~~VrV~~------~~vGGgFG~K~~~~ 242 (768)
T TIGR03196 184 PEAALAMPAADGGFDLRAATQHG-----HKDREQIAACFDI--------PEEKIRITL------AGMGGAFGGKDDLN 242 (768)
T ss_pred CceEEEEEcCCCCEEEEECCCch-----HHHHHHHHHHhCC--------CHHHEEEEe------CCCCCccCCccccc
Confidence 45667777778999999987643 2346678899999 999999985 45688999997654
No 50
>PRK08493 NADH dehydrogenase subunit G; Validated
Probab=67.40 E-value=10 Score=48.17 Aligned_cols=52 Identities=19% Similarity=0.358 Sum_probs=39.9
Q ss_pred EEEEECCEEEEEecCCCCCChHHHHhccCCCccC----------CCce----EEEeCccccCCC--CCCCCC
Q 002311 14 VVFAVNGEKFEVSSVDPSTTLLEFLRYHTRFKSV----------KLGC----VLVDAEKTHRPE--PPPGFS 69 (937)
Q Consensus 14 i~~~~Ng~~~~~~~~~p~~~Ll~~LR~~~~l~g~----------k~gC----vl~dg~~~~~~~--~~pg~~ 69 (937)
|+|+|||+++++ .+++|+|+++|.. |+.-. ..+| |.|||+++.+|. ..+||.
T Consensus 2 v~i~IdG~~v~~---~~G~til~aa~~~-gi~iP~lC~~~~~~~~G~Cr~C~VeV~G~~~~AC~t~v~dGM~ 69 (819)
T PRK08493 2 ITITINGKECEA---QEGEYILNVARRN-GIFIPAICYLSGCSPTLACRLCMVEADGKRVYSCNTKAKEGMN 69 (819)
T ss_pred eEEEECCEEEEe---CCCCHHHHHHHHc-CCccccccccCCCCCCccccceEEEECCEEeccccCCCCCCCE
Confidence 789999999876 5899999999974 54332 2334 889999988774 369995
No 51
>PF02594 DUF167: Uncharacterised ACR, YggU family COG1872; InterPro: IPR003746 This entry describes proteins of unknown function. Structures for two of these proteins, YggU from Escherichia coli and MTH637 from the archaea Methanobacterium thermoautotrophicum, have been determined; they have a core 2-layer alpha/beta structure consisting of beta(2)-loop-alpha-beta(2)-alpha [, ].; PDB: 1YH5_A 1N91_A 1JRM_A.
Probab=66.96 E-value=20 Score=31.77 Aligned_cols=53 Identities=15% Similarity=0.164 Sum_probs=40.7
Q ss_pred ceEEEEccCCcEEEEeccccccccHHHHHHHHHHHHhcccccCCCCCCCCcEEEecCCCcc
Q 002311 611 PGKVSILSDGSVVVEVGGIELGQGLWTKVKQMAAFALSSIQCGGMGDLLETVRVIQADTLS 671 (937)
Q Consensus 611 ~a~v~l~~DG~v~v~~g~~e~GqG~~T~~aqiaAe~Lgi~~~~~~~~~~~~I~v~~~dT~~ 671 (937)
+....++.||.+.|...+.+.--=.+..+....|+.||+ |..+|+++.|.|+.
T Consensus 17 ~~i~~~~~~~~l~i~v~app~~GkAN~ali~~La~~l~v--------~ks~i~i~~G~~Sr 69 (77)
T PF02594_consen 17 NAIVGVEGDGALKIRVTAPPVDGKANKALIRFLAKALGV--------PKSDIEIVSGHTSR 69 (77)
T ss_dssp -EEEEE-TTT-EEEEBSTTCCCCCHHHHHHHHHHHHCT----------TTCEEECC-CCCS
T ss_pred cccccccCceEEEEEEecCCCcChhHHHHHHHHHHHhCC--------CcccEEEEecCCCC
Confidence 344467777999999999988777899999999999999 99999999998753
No 52
>PRK07696 sulfur carrier protein ThiS; Provisional
Probab=66.84 E-value=9.3 Score=32.77 Aligned_cols=42 Identities=21% Similarity=0.285 Sum_probs=31.0
Q ss_pred EEEEECCEEEEEecCCCC-CChHHHHhccCCCccCCCce-EEEeCccccC
Q 002311 14 VVFAVNGEKFEVSSVDPS-TTLLEFLRYHTRFKSVKLGC-VLVDAEKTHR 61 (937)
Q Consensus 14 i~~~~Ng~~~~~~~~~p~-~~Ll~~LR~~~~l~g~k~gC-vl~dg~~~~~ 61 (937)
++++|||+.+++ +.+ .||.++|.. +++. ..++ |-+|++-++.
T Consensus 1 m~I~vNG~~~~~---~~~~~tv~~lL~~-l~~~--~~~vav~vN~~iv~r 44 (67)
T PRK07696 1 MNLKINGNQIEV---PESVKTVAELLTH-LELD--NKIVVVERNKDILQK 44 (67)
T ss_pred CEEEECCEEEEc---CCCcccHHHHHHH-cCCC--CCeEEEEECCEEeCH
Confidence 468999999877 234 689999964 6773 4577 8889887753
No 53
>PRK06437 hypothetical protein; Provisional
Probab=66.41 E-value=9.3 Score=32.76 Aligned_cols=42 Identities=14% Similarity=0.251 Sum_probs=30.8
Q ss_pred EEEECC-EEEEEecCCCCCChHHHHhccCCCccCCCce-EEEeCcccc
Q 002311 15 VFAVNG-EKFEVSSVDPSTTLLEFLRYHTRFKSVKLGC-VLVDAEKTH 60 (937)
Q Consensus 15 ~~~~Ng-~~~~~~~~~p~~~Ll~~LR~~~~l~g~k~gC-vl~dg~~~~ 60 (937)
-++||| +..+. +++.+.|+.++|+. +++. ..++ |.+||+.++
T Consensus 4 ~~~v~g~~~~~~-~i~~~~tv~dLL~~-Lgi~--~~~vaV~vNg~iv~ 47 (67)
T PRK06437 4 MIRVKGHINKTI-EIDHELTVNDIIKD-LGLD--EEEYVVIVNGSPVL 47 (67)
T ss_pred eEEecCCcceEE-EcCCCCcHHHHHHH-cCCC--CccEEEEECCEECC
Confidence 367888 22344 46688999999975 7884 4677 789999876
No 54
>TIGR03311 Se_dep_Molyb_1 selenium-dependent molybdenum hydroxylase 1. Members of this protein family show full length homology to the molybdenum-containing aldehyde oxido-reductase of Desulfovibrio gigas. Members, however, are found only within species that have, and near those genes that encode, a set of predicted accessory proteins for selenium-dependent molybdenum hydroxylases. The best known examples of such enzymes are forms of xanthine dehydrogenase and purine hydroxylase; this family appears to be another such enzyme.
Probab=64.17 E-value=11 Score=48.29 Aligned_cols=71 Identities=17% Similarity=0.126 Sum_probs=48.1
Q ss_pred CCceEEEECCCCcEEEEeCCCCh-----HHHHHHHHHHhCCCCCcEEEEec------cCCCCCCCCCcccchHHHHHHHH
Q 002311 342 TQTALAVPDEDNCLVVYSSIQCP-----EYAHATIARCLGIPEHNVRVITR------RVGGGFGGKAIKAMPVATACALA 410 (937)
Q Consensus 342 p~~avA~~~~dg~l~V~~stQ~p-----~~~r~~lA~~Lglp~~kVrV~~~------~vGGgFG~K~~~~~~~~~~aAla 410 (937)
+..++.... ||.++|+++++.. ..+.+.+|+.||+|.++|+|+.. +-+|.+|++... ..--++-.|
T Consensus 594 ~~~~~~~~~-DGsv~v~~g~~e~GQG~~T~~aQiaAe~LGip~e~V~v~~~DT~~~p~~~gt~aSR~t~--~~G~Av~~A 670 (848)
T TIGR03311 594 TGRCNLAVE-DGKVHIRTSAACIGQGLGTVLTQIVCETTGLPPEVIVCELPDTALTPDSGTTTASRQSL--FTGEATRRA 670 (848)
T ss_pred cceEEEEEc-CCEEEEEECCCCcCcCHHHHHHHHHHHHHCCCHHHEEEEcCCCCCCCCCCCCchhhHHH--HHHHHHHHH
Confidence 345566665 7899999998654 34566678899999999999864 456778888642 222333345
Q ss_pred HHhCC
Q 002311 411 AYKLC 415 (937)
Q Consensus 411 A~~~g 415 (937)
|.+++
T Consensus 671 a~~l~ 675 (848)
T TIGR03311 671 AAKLK 675 (848)
T ss_pred HHHHH
Confidence 55553
No 55
>PTZ00305 NADH:ubiquinone oxidoreductase; Provisional
Probab=63.34 E-value=17 Score=40.22 Aligned_cols=56 Identities=29% Similarity=0.430 Sum_probs=39.7
Q ss_pred eeEEEEEECCEEEEEecCCCCCChHHHHhccCCCc----------cCCCce----EEEeCcc--ccCCC--CCCCCC
Q 002311 11 RHSVVFAVNGEKFEVSSVDPSTTLLEFLRYHTRFK----------SVKLGC----VLVDAEK--THRPE--PPPGFS 69 (937)
Q Consensus 11 ~~~i~~~~Ng~~~~~~~~~p~~~Ll~~LR~~~~l~----------g~k~gC----vl~dg~~--~~~~~--~~pg~~ 69 (937)
+.++.++|||+++++ +++++|||+..|+. |+. ....+| |-|+|+. +.+|. ..+||.
T Consensus 66 ~~~~~I~IDGk~VeV--~~~G~TILeAAr~~-GI~IPtLCy~~~L~p~G~CRlClVEVeG~~~lv~AC~tpV~eGM~ 139 (297)
T PTZ00305 66 KPRAIMFVNKRPVEI--IPQEENLLEVLERE-GIRVPKFCYHPILSVAGNCRMCLVQVDGTQNLVVSCATVALPGMS 139 (297)
T ss_pred CCceEEEECCEEEEe--cCCCChHHHHHHHc-CCCcCccccCCCCCCCCccceeEEEECCCcCcccccCCcCCCCCE
Confidence 346789999999876 36899999999874 332 234566 7788864 45554 368995
No 56
>PRK12576 succinate dehydrogenase iron-sulfur subunit; Provisional
Probab=62.90 E-value=7.3 Score=43.16 Aligned_cols=42 Identities=24% Similarity=0.304 Sum_probs=31.3
Q ss_pred EEEEEecCCCCCChHHHHhcc---CCC-ccCCCce---------EEEeCccccCCC
Q 002311 21 EKFEVSSVDPSTTLLEFLRYH---TRF-KSVKLGC---------VLVDAEKTHRPE 63 (937)
Q Consensus 21 ~~~~~~~~~p~~~Ll~~LR~~---~~l-~g~k~gC---------vl~dg~~~~~~~ 63 (937)
+.+++ ++++++|||++|+.- ... .+.+.+| |.|||+++.+|.
T Consensus 25 ~~~~v-~~~~~~tvLd~L~~i~~~~d~tl~~~~~C~~G~CgsC~v~ING~~~laC~ 79 (279)
T PRK12576 25 QEYKV-KVDRFTQVTEALRRIKEEQDPTLSYRASCHMAVCGSCGMKINGEPRLACK 79 (279)
T ss_pred EEEEE-ecCCCCHHHHHHHHhCCccCCCceecCCCCCCCCCCCEEEECCcEecccc
Confidence 45677 689999999999982 221 2557776 899999988653
No 57
>TIGR00384 dhsB succinate dehydrogenase and fumarate reductase iron-sulfur protein. Succinate dehydrogenase and fumarate reductase are reverse directions of the same enzymatic interconversion, succinate + FAD+ = fumarate + FADH2 (EC 1.3.11.1). In E. coli, the forward and reverse reactions are catalyzed by distinct complexes: fumarate reductase operates under anaerobic conditions and succinate dehydrogenase operates under aerobic conditions. This model also describes a region of the B subunit of a cytosolic archaeal fumarate reductase.
Probab=62.90 E-value=5.7 Score=42.34 Aligned_cols=41 Identities=22% Similarity=0.364 Sum_probs=31.6
Q ss_pred EEEEEecCCCCCChHHHHhccC----CCccCCCce---------EEEeCccccCC
Q 002311 21 EKFEVSSVDPSTTLLEFLRYHT----RFKSVKLGC---------VLVDAEKTHRP 62 (937)
Q Consensus 21 ~~~~~~~~~p~~~Ll~~LR~~~----~l~g~k~gC---------vl~dg~~~~~~ 62 (937)
+.+++ ++++++|||++|+... ...+.+.+| |.|||+++.+|
T Consensus 15 ~~~~v-~~~~~~tvl~~l~~i~~~~~~~l~~~~~C~~g~Cg~C~v~vnG~~~laC 68 (220)
T TIGR00384 15 QSYEV-PADEGMTVLDALNYIKDEQDPSLAFRRSCRNGICGSCAMNVNGKPVLAC 68 (220)
T ss_pred EEEEE-eCCCCCcHHHHHHHHHHhcCCCceeecccCCCCCCCCeeEECCEEhhhh
Confidence 56777 5889999999998621 345677776 89999988765
No 58
>PLN02906 xanthine dehydrogenase
Probab=62.66 E-value=17 Score=48.80 Aligned_cols=71 Identities=48% Similarity=0.786 Sum_probs=61.0
Q ss_pred CCChHHHHhccCCCccCCCce---------EEEe------C----ccccCC-----------------------------
Q 002311 31 STTLLEFLRYHTRFKSVKLGC---------VLVD------A----EKTHRP----------------------------- 62 (937)
Q Consensus 31 ~~~Ll~~LR~~~~l~g~k~gC---------vl~d------g----~~~~~~----------------------------- 62 (937)
+++||+|||+ ++|||||+|| |+|| | +++++|
T Consensus 1 ~~~ll~~LR~-~~l~g~k~gC~~g~CGaCtv~~~~~~~~~~~~~~~~v~sC~~~~~~~~g~~i~Tvegl~~~~~~~~~vq 79 (1319)
T PLN02906 1 HQTLLEYLRD-LGLTGTKLGCGEGGCGACTVMVSHYDRKTGKCVHYAVNACLAPLYSVEGMHVITVEGIGNRRDGLHPVQ 79 (1319)
T ss_pred CCcHHHHHHh-CCCCCCCCCcCCCCCCCeEEEECCccccCCccCCeEehhhHHHHHHhCCCEEEecCCCCCCCCCCCHHH
Confidence 4799999998 9999999999 9998 5 466543
Q ss_pred ------------CCCCCCC------------CCCHHHHHHHHhCCcccCCCCHHHHHHHHHHhh
Q 002311 63 ------------EPPPGFS------------KLTISEAEKAIAGNLCRCTGYRPIADACKSFAA 102 (937)
Q Consensus 63 ------------~~~pg~~------------~p~~~ei~~~l~gnlCRCtgy~~i~~A~~~~~~ 102 (937)
.|||||+ .|+++||+++|+|||||||||++|++|+++++.
T Consensus 80 ~a~~~~~~~QCG~CtpG~vm~~~~ll~~~~~~~~~~~i~~~l~gnlCRCtgy~~i~~a~~~~~~ 143 (1319)
T PLN02906 80 EALASMHGSQCGFCTPGFIMSMYALLRSSKTPPTEEQIEECLAGNLCRCTGYRPILDAFRVFAK 143 (1319)
T ss_pred HHHHHcCCCcCCCCchHHHHHHHHHHHhCCCCCCHHHHHHHhcCCcccCCCCHHHHHHHHHHHh
Confidence 2789985 369999999999999999999999999986543
No 59
>TIGR02969 mam_aldehyde_ox aldehyde oxidase. Members of this family are mammalian aldehyde oxidase (EC 1.2.3.1) isozymes, closely related to xanthine dehydrogenase/oxidase.
Probab=62.15 E-value=15 Score=49.52 Aligned_cols=90 Identities=43% Similarity=0.809 Sum_probs=79.9
Q ss_pred EEEEEECCEEEEEecCCCCCChHHHHhccCCCccCCCce---------EEEe----------CccccCC-----------
Q 002311 13 SVVFAVNGEKFEVSSVDPSTTLLEFLRYHTRFKSVKLGC---------VLVD----------AEKTHRP----------- 62 (937)
Q Consensus 13 ~i~~~~Ng~~~~~~~~~p~~~Ll~~LR~~~~l~g~k~gC---------vl~d----------g~~~~~~----------- 62 (937)
.|+|+|||+.++..+++|+++||+|||++++|||||+|| |+|| |+++++|
T Consensus 2 ~~~~~~Ng~~~~~~~~~~~~~ll~~LR~~~~l~gtk~gC~~G~CGaCtV~~~~~~~~~~~~~~~~v~sCl~~~~~~~g~~ 81 (1330)
T TIGR02969 2 ELLFYVNGRKVVEKNVDPETMLLPYLRKKLRLTGTKYGCGGGGCGACTVMISRYNPSTKSIRHHPVNACLTPICSLYGAA 81 (1330)
T ss_pred cEEEEECCEEEEeccCCCCCcHHHHHHhhcCCCCCCCCcCCCCCCCcEEEECCccccccccCCcEEehhHHHHHHhCCCE
Confidence 589999999985547999999999999999999999999 9998 5777654
Q ss_pred ------------------------------CCCCCCC-----------CCCHHHHHHHHhCCcccCCCCHHHHHHHHHHh
Q 002311 63 ------------------------------EPPPGFS-----------KLTISEAEKAIAGNLCRCTGYRPIADACKSFA 101 (937)
Q Consensus 63 ------------------------------~~~pg~~-----------~p~~~ei~~~l~gnlCRCtgy~~i~~A~~~~~ 101 (937)
.|||||+ +|+++||+++|+|||||||||++|++|+++++
T Consensus 82 v~TvEgl~~~~~~l~pvq~a~~~~~~~QCGfCtpG~vm~~~~ll~~~~~p~~~~i~~~l~gnlCRCtgY~~i~~a~~~~~ 161 (1330)
T TIGR02969 82 VTTVEGIGSTRTRLHPVQERIAKCHGTQCGFCTPGMVMSMYALLRNHPEPTLDQLTDALGGNLCRCTGYRPIIDACKTFC 161 (1330)
T ss_pred EEecCCcCCCCCCCCHHHHHHHHcCCCcCCCCchHHHHHHHHHHHcCCCCCHHHHHHHhcCCcccCCCCHHHHHHHHHHh
Confidence 2789985 68999999999999999999999999999765
Q ss_pred h
Q 002311 102 A 102 (937)
Q Consensus 102 ~ 102 (937)
.
T Consensus 162 ~ 162 (1330)
T TIGR02969 162 K 162 (1330)
T ss_pred h
Confidence 3
No 60
>PRK12385 fumarate reductase iron-sulfur subunit; Provisional
Probab=61.94 E-value=6.2 Score=42.84 Aligned_cols=41 Identities=24% Similarity=0.391 Sum_probs=30.6
Q ss_pred EEEEEecCCCCCChHHHH---hccCCCc-cCCCce---------EEEeCccccCC
Q 002311 21 EKFEVSSVDPSTTLLEFL---RYHTRFK-SVKLGC---------VLVDAEKTHRP 62 (937)
Q Consensus 21 ~~~~~~~~~p~~~Ll~~L---R~~~~l~-g~k~gC---------vl~dg~~~~~~ 62 (937)
+.+.+ ++++++|||+.| ++++..+ +.+.+| |.|||+++.+|
T Consensus 25 ~~~~v-~~~~~~tvl~~L~~ik~~~d~~l~fr~~C~~giCGsC~v~InG~~~laC 78 (244)
T PRK12385 25 QTYEV-PYDETTSLLDALGYIKDNLAPDLSYRWSCRMAICGSCGMMVNNVPKLAC 78 (244)
T ss_pred EEEEe-eCCCCCcHHHHHHHHHHhcCCCceeccCCCCCcCCCCcceECccChhhH
Confidence 45667 688999999999 4444333 566776 89999998765
No 61
>PRK06488 sulfur carrier protein ThiS; Validated
Probab=59.18 E-value=15 Score=31.10 Aligned_cols=40 Identities=28% Similarity=0.319 Sum_probs=29.6
Q ss_pred EEEEECCEEEEEecCCCCCChHHHHhccCCCccCCCce-EEEeCcccc
Q 002311 14 VVFAVNGEKFEVSSVDPSTTLLEFLRYHTRFKSVKLGC-VLVDAEKTH 60 (937)
Q Consensus 14 i~~~~Ng~~~~~~~~~p~~~Ll~~LR~~~~l~g~k~gC-vl~dg~~~~ 60 (937)
++++|||+.+++ +..||.++|+. +++.. .++ |-+|++-++
T Consensus 1 m~i~~Ng~~~~~----~~~tl~~Ll~~-l~~~~--~~vavavN~~iv~ 41 (65)
T PRK06488 1 MKLFVNGETLQT----EATTLALLLAE-LDYEG--NWLATAVNGELVH 41 (65)
T ss_pred CEEEECCeEEEc----CcCcHHHHHHH-cCCCC--CeEEEEECCEEcC
Confidence 478999999887 23689999964 67643 456 788988765
No 62
>PLN00192 aldehyde oxidase
Probab=55.38 E-value=24 Score=47.60 Aligned_cols=99 Identities=72% Similarity=1.101 Sum_probs=85.4
Q ss_pred eeEEEEEECCEEEEEecCCCCCChHHHHhccCCCccCCCce---------EEE----------eCccccCC---------
Q 002311 11 RHSVVFAVNGEKFEVSSVDPSTTLLEFLRYHTRFKSVKLGC---------VLV----------DAEKTHRP--------- 62 (937)
Q Consensus 11 ~~~i~~~~Ng~~~~~~~~~p~~~Ll~~LR~~~~l~g~k~gC---------vl~----------dg~~~~~~--------- 62 (937)
.+.|+|+|||+.+++++++|+++||+|||++++|||||+|| |+| ||+++++|
T Consensus 3 ~~~i~~~vNg~~~~~~~~~p~~~Ll~~LR~~~~ltgtK~gC~~G~CGaCtV~v~~~~~~~~~~~~~~v~sCl~~~~~~~g 82 (1344)
T PLN00192 3 NMSLVFAVNGERFELSSVDPSTTLLEFLRTQTPFKSVKLGCGEGGCGACVVLLSKYDPVLDQVEDFTVSSCLTLLCSVNG 82 (1344)
T ss_pred cceEEEEECCEEEEeccCCCCCcHHHHHHHhhCCCCcCCCCCCCcCCCcEEEEeeccccccCcCCcEEehHHHHHHHhCC
Confidence 34799999999999866999999999999999999999999 888 68887654
Q ss_pred --------------------------------CCCCCCC--------C---------------CCHHHHHHHHhCCcccC
Q 002311 63 --------------------------------EPPPGFS--------K---------------LTISEAEKAIAGNLCRC 87 (937)
Q Consensus 63 --------------------------------~~~pg~~--------~---------------p~~~ei~~~l~gnlCRC 87 (937)
.|||||+ + |+++||+++|+||||||
T Consensus 83 ~~i~TvEgl~~~~~~lhpvq~a~~~~~~~QCGfCtpG~vms~~~ll~~~~~~~~~~p~~~~~~~~~~~i~~~l~gnlCRC 162 (1344)
T PLN00192 83 CSITTSEGLGNSKDGFHPIHKRFAGFHASQCGFCTPGMCISLFSALVNADKTDRPEPPSGFSKLTVVEAEKAVSGNLCRC 162 (1344)
T ss_pred CEEEeecCcCCCCCCCCHHHHHHHHcCCCccCCCChHHHHHHHHHHHhcccccCCCcccccCCCCHHHHHHHhcCCceeC
Confidence 2789984 2 27999999999999999
Q ss_pred CCCHHHHHHHHHHhhhcccccc
Q 002311 88 TGYRPIADACKSFAADVDIEDL 109 (937)
Q Consensus 88 tgy~~i~~A~~~~~~~~~~~~~ 109 (937)
|||++|++|+++++...+.++.
T Consensus 163 tgY~~i~~a~~~~~~~~~~~~~ 184 (1344)
T PLN00192 163 TGYRPIVDACKSFAADVDIEDL 184 (1344)
T ss_pred CCCHHHHHHHHHHHhhccchhc
Confidence 9999999999999876544443
No 63
>PRK07569 bidirectional hydrogenase complex protein HoxU; Validated
Probab=52.97 E-value=21 Score=38.35 Aligned_cols=53 Identities=15% Similarity=0.142 Sum_probs=37.0
Q ss_pred EEEEEECCEEEEEecCCCCCChHHHHhccCCCcc----------CCCce----EEEeCcc--ccCCC--CCCCCC
Q 002311 13 SVVFAVNGEKFEVSSVDPSTTLLEFLRYHTRFKS----------VKLGC----VLVDAEK--THRPE--PPPGFS 69 (937)
Q Consensus 13 ~i~~~~Ng~~~~~~~~~p~~~Ll~~LR~~~~l~g----------~k~gC----vl~dg~~--~~~~~--~~pg~~ 69 (937)
.|+|+|||+.++ +.+++|||+.++.. |+.- .+.+| |.|||+. +.+|. ...||.
T Consensus 3 ~v~i~idg~~~~---~~~g~til~a~~~~-gi~ip~~C~~~~~~~~G~C~~C~V~v~g~~~~~~aC~t~v~~Gm~ 73 (234)
T PRK07569 3 VKTLTIDDQLVS---AREGETLLEAAREA-GIPIPTLCHLDGLSDVGACRLCLVEIEGSNKLLPACVTPVAEGMV 73 (234)
T ss_pred eEEEEECCEEEE---eCCCCHHHHHHHHc-CCCCCcCcCCCCCCCCCccCCcEEEECCCCccccCcCCCCCCCCE
Confidence 589999999965 46899999999864 3211 13445 8899974 34553 358885
No 64
>PRK09129 NADH dehydrogenase subunit G; Validated
Probab=52.83 E-value=24 Score=44.93 Aligned_cols=52 Identities=19% Similarity=0.274 Sum_probs=37.7
Q ss_pred EEEEECCEEEEEecCCCCCChHHHHhccCCCcc----------CCCce----EEEeCcc--ccCCC--CCCCCC
Q 002311 14 VVFAVNGEKFEVSSVDPSTTLLEFLRYHTRFKS----------VKLGC----VLVDAEK--THRPE--PPPGFS 69 (937)
Q Consensus 14 i~~~~Ng~~~~~~~~~p~~~Ll~~LR~~~~l~g----------~k~gC----vl~dg~~--~~~~~--~~pg~~ 69 (937)
|+|+|||+++++ .+++|||+.++.. |..- ....| |-|||.+ +.+|. ..+||.
T Consensus 2 ~~~~idg~~~~~---~~g~~il~a~~~~-g~~ip~~c~~~~~~~~~~C~~C~v~v~~~~~~~~aC~~~~~~gm~ 71 (776)
T PRK09129 2 VEIEIDGKKVEV---PEGSMVIEAADKA-GIYIPRFCYHKKLSIAANCRMCLVEVEKAPKPLPACATPVTDGMK 71 (776)
T ss_pred eEEEECCEEEEe---CCCCHHHHHHHHc-CCCCCcccCCCCCCCCCCcceeEEEECCCCCcCcccCCCCCCCCE
Confidence 799999999876 5899999999874 3211 12356 8888865 55664 468985
No 65
>TIGR02008 fdx_plant ferredoxin [2Fe-2S]. This model represents single domain 2Fe-2S (also called plant type) ferredoxins. In general, these occur as a single domain proteins or with a chloroplast transit peptide. Species tend to be photosynthetic, but several forms may occur in one species and individually may not be associated with photocynthesis. Halobacterial forms differ somewhat in architecture; they score between trusted and noise cutoffs. Sequences scoring below the noise cutoff tend to be ferredoxin-related domains of larger proteins.
Probab=43.84 E-value=42 Score=30.85 Aligned_cols=36 Identities=11% Similarity=0.239 Sum_probs=26.0
Q ss_pred EEEE-EECCEEEEEecCCCCCChHHHHhccCCCccCCCce
Q 002311 13 SVVF-AVNGEKFEVSSVDPSTTLLEFLRYHTRFKSVKLGC 51 (937)
Q Consensus 13 ~i~~-~~Ng~~~~~~~~~p~~~Ll~~LR~~~~l~g~k~gC 51 (937)
+|+| +-+|+..++ .++++++||+.|+++ |+ .+..+|
T Consensus 4 ~v~~~~~~~~~~~~-~~~~g~tLLda~~~~-Gi-~i~~~C 40 (97)
T TIGR02008 4 KVTLVNPDGGEETI-ECPDDQYILDAAEEA-GI-DLPYSC 40 (97)
T ss_pred EEEEEECCCCEEEE-EECCCCcHHHHHHHc-CC-CCCcCC
Confidence 3444 347766777 588999999999875 65 566677
No 66
>CHL00134 petF ferredoxin; Validated
Probab=43.65 E-value=35 Score=31.56 Aligned_cols=36 Identities=11% Similarity=0.260 Sum_probs=27.5
Q ss_pred EEEEEE--CCEEEEEecCCCCCChHHHHhccCCCccCCCce
Q 002311 13 SVVFAV--NGEKFEVSSVDPSTTLLEFLRYHTRFKSVKLGC 51 (937)
Q Consensus 13 ~i~~~~--Ng~~~~~~~~~p~~~Ll~~LR~~~~l~g~k~gC 51 (937)
+|.|.. +|..+++ +++++++||+.|+++ |+ .+..+|
T Consensus 5 ~v~~~~~~~~~~~~~-~~~~~~tLL~a~~~~-Gi-~i~~~C 42 (99)
T CHL00134 5 KVTLLSEEEGIDVTI-DCPDDVYILDAAEEQ-GI-DLPYSC 42 (99)
T ss_pred EEEEEecCCCCeEEE-EECCCCcHHHHHHHc-CC-CCCcCC
Confidence 445544 8888888 689999999999875 65 666677
No 67
>PRK10713 2Fe-2S ferredoxin YfaE; Provisional
Probab=41.64 E-value=54 Score=29.28 Aligned_cols=43 Identities=26% Similarity=0.434 Sum_probs=30.2
Q ss_pred EEEEEECCEEEEEecCCCCCChHHHHhccCCCccCCCce----------EEEeCccc
Q 002311 13 SVVFAVNGEKFEVSSVDPSTTLLEFLRYHTRFKSVKLGC----------VLVDAEKT 59 (937)
Q Consensus 13 ~i~~~~Ng~~~~~~~~~p~~~Ll~~LR~~~~l~g~k~gC----------vl~dg~~~ 59 (937)
+|+|.-+|+.+++ .+++++||+.|+++ |+ .+..+| -++.|+.-
T Consensus 3 ~v~~~~~~~~~~~--~~~~~tlL~a~~~~-gi-~~p~~Cr~G~Cg~C~~~~~sG~v~ 55 (84)
T PRK10713 3 RVTLRITGTQLLC--QDEHPSLLAALESH-NV-AVEYQCREGYCGSCRTRLVAGQVD 55 (84)
T ss_pred EEEEEeCCcEEEe--cCCCCcHHHHHHHc-CC-CCCCCCCCeECCCCEeEEEeCeEe
Confidence 5677777766654 22459999999875 76 778888 35677643
No 68
>PRK11840 bifunctional sulfur carrier protein/thiazole synthase protein; Provisional
Probab=37.93 E-value=37 Score=38.29 Aligned_cols=42 Identities=21% Similarity=0.183 Sum_probs=32.8
Q ss_pred EEEEECCEEEEEecCCCCCChHHHHhccCCCccCCCce-EEEeCccccC
Q 002311 14 VVFAVNGEKFEVSSVDPSTTLLEFLRYHTRFKSVKLGC-VLVDAEKTHR 61 (937)
Q Consensus 14 i~~~~Ng~~~~~~~~~p~~~Ll~~LR~~~~l~g~k~gC-vl~dg~~~~~ 61 (937)
++++|||+.+++ +.+.+|.++|.. +++. ..++ |.+||+.++.
T Consensus 1 M~I~VNGk~~el---~e~~TL~dLL~~-L~i~--~~~VAVeVNgeIVpr 43 (326)
T PRK11840 1 MRIRLNGEPRQV---PAGLTIAALLAE-LGLA--PKKVAVERNLEIVPR 43 (326)
T ss_pred CEEEECCEEEec---CCCCcHHHHHHH-cCCC--CCeEEEEECCEECCH
Confidence 468999999876 467899999964 6773 5577 7899998864
No 69
>PRK09130 NADH dehydrogenase subunit G; Validated
Probab=36.88 E-value=47 Score=41.68 Aligned_cols=52 Identities=25% Similarity=0.270 Sum_probs=37.1
Q ss_pred EEEEECCEEEEEecCCCCCChHHHHhccCCCc----------cCCCce----EEEeCc---cccCCC--CCCCCC
Q 002311 14 VVFAVNGEKFEVSSVDPSTTLLEFLRYHTRFK----------SVKLGC----VLVDAE---KTHRPE--PPPGFS 69 (937)
Q Consensus 14 i~~~~Ng~~~~~~~~~p~~~Ll~~LR~~~~l~----------g~k~gC----vl~dg~---~~~~~~--~~pg~~ 69 (937)
|+++|||+++++ ++++|+|+..|.. |+. +....| |-|+|. ++.+|. ..+||.
T Consensus 2 ~~~~Idg~~v~v---~~g~til~a~~~~-gi~IP~lCy~~~l~~~g~Cr~ClVev~~~~~~~~~sC~~~v~~gm~ 72 (687)
T PRK09130 2 VKLKVDGKEIEV---PDGYTLLQACEAA-GAEIPRFCYHERLSIAGNCRMCLVEVKGGPPKPVASCAMPVGEGMV 72 (687)
T ss_pred eEEEECCEEEEe---CCCCHHHHHHHHc-CCCcCcccCCCCCCCCCCCCCCEEEECCCCCCcccccCCCCCCCCE
Confidence 789999998865 6999999999864 432 223456 777775 455654 258885
No 70
>PRK11872 antC anthranilate dioxygenase reductase; Provisional
Probab=36.38 E-value=47 Score=37.79 Aligned_cols=35 Identities=20% Similarity=0.319 Sum_probs=28.1
Q ss_pred EEEEE---CCEEEEEecCCCCCChHHHHhccCCCccCCCce
Q 002311 14 VVFAV---NGEKFEVSSVDPSTTLLEFLRYHTRFKSVKLGC 51 (937)
Q Consensus 14 i~~~~---Ng~~~~~~~~~p~~~Ll~~LR~~~~l~g~k~gC 51 (937)
.+++| ||+.+.+ ++.++++||+.|++. |+ .+..+|
T Consensus 3 ~~v~~~~~~~~~~~~-~~~~g~tlL~a~~~~-g~-~~p~~C 40 (340)
T PRK11872 3 HKVALSFADGKTLFF-PVGKDELLLDAALRN-GI-NLPLDC 40 (340)
T ss_pred eEEEEEecCCcEEEE-EeCCCCcHHHHHHHc-CC-CCcCCC
Confidence 35666 9999888 689999999999875 76 667777
No 71
>TIGR01973 NuoG NADH-quinone oxidoreductase, chain G. This model represents the G subunit (one of 14: A-N) of the NADH-quinone oxidoreductase complex I which generally couples NADH and ubiquinone oxidation/reduction in bacteria and mammalian mitochondria while translocating protons, but may act on NADPH and/or plastoquinone in cyanobacteria and plant chloroplasts. This model excludes related subunits from formate dehydrogenase complexes.
Probab=35.99 E-value=36 Score=41.92 Aligned_cols=50 Identities=20% Similarity=0.256 Sum_probs=35.4
Q ss_pred EEECCEEEEEecCCCCCChHHHHhccCCCcc----------CCCce----EEEeCc---cccCCC--CCCCCC
Q 002311 16 FAVNGEKFEVSSVDPSTTLLEFLRYHTRFKS----------VKLGC----VLVDAE---KTHRPE--PPPGFS 69 (937)
Q Consensus 16 ~~~Ng~~~~~~~~~p~~~Ll~~LR~~~~l~g----------~k~gC----vl~dg~---~~~~~~--~~pg~~ 69 (937)
++|||+++++ +++++||+.+++. |+.- ....| |-|+|+ .+.+|. .+.||.
T Consensus 1 ~~idg~~~~~---~~g~~il~a~~~~-gi~ip~~C~~~~l~~~g~Cr~C~v~v~g~~~~~~~aC~~~~~~gm~ 69 (603)
T TIGR01973 1 IFIDGKELEV---PKGTTVLQACLSA-GIEIPRFCYHEKLSIAGNCRMCLVEVEKFPDKPVASCATPVTDGMK 69 (603)
T ss_pred CEECCEEEEe---CCCCHHHHHHHHc-CCCccccCCCCCCCCCCccccCEEEECCCCCCcccccCCCCCCCCE
Confidence 5899999876 5899999999874 3221 12345 888986 466664 368995
No 72
>PRK00647 hypothetical protein; Validated
Probab=35.35 E-value=80 Score=29.29 Aligned_cols=45 Identities=22% Similarity=0.105 Sum_probs=40.0
Q ss_pred cCCcEEEEeccccccccHHHHHHHHHHHHhcccccCCCCCCCCcEEEecCCCc
Q 002311 618 SDGSVVVEVGGIELGQGLWTKVKQMAAFALSSIQCGGMGDLLETVRVIQADTL 670 (937)
Q Consensus 618 ~DG~v~v~~g~~e~GqG~~T~~aqiaAe~Lgi~~~~~~~~~~~~I~v~~~dT~ 670 (937)
.+|.+.|...+.+.---.+..+.+..|+.||+ |-.+|+++.|.|+
T Consensus 25 ~~~~Lkvrv~ApPvdGKAN~ali~~LAk~l~v--------pks~I~Iv~G~tS 69 (96)
T PRK00647 25 EGGILKVRVTEVPEKGKANDAVIALLAKFLSL--------PKRDVTLIAGETS 69 (96)
T ss_pred cCCEEEEEEecCCCCChHHHHHHHHHHHHhCC--------ChhhEEEEecCCC
Confidence 35788888888888778899999999999999 9999999999885
No 73
>PF13085 Fer2_3: 2Fe-2S iron-sulfur cluster binding domain; PDB: 3P4Q_N 1KFY_N 3CIR_N 3P4R_B 2B76_N 1KF6_B 3P4P_N 3P4S_B 1L0V_B 1ZOY_B ....
Probab=33.70 E-value=32 Score=32.70 Aligned_cols=41 Identities=22% Similarity=0.483 Sum_probs=26.9
Q ss_pred EEEEEecCCCCCChHHHHhc---cC-CCccCCCce---------EEEeCccccCC
Q 002311 21 EKFEVSSVDPSTTLLEFLRY---HT-RFKSVKLGC---------VLVDAEKTHRP 62 (937)
Q Consensus 21 ~~~~~~~~~p~~~Ll~~LR~---~~-~l~g~k~gC---------vl~dg~~~~~~ 62 (937)
+.+++ ++++++|+|+.|.. ++ .-..-+.+| |.|||++..+|
T Consensus 19 ~~y~v-~~~~~~tVLd~L~~Ik~~~D~sLafr~sCr~giCGsCam~ING~~~LAC 72 (110)
T PF13085_consen 19 QEYEV-PVEPGMTVLDALNYIKEEQDPSLAFRYSCRSGICGSCAMRINGRPRLAC 72 (110)
T ss_dssp EEEEE-EGGSTSBHHHHHHHHHHHT-TT--B--SSSSSSSSTTEEEETTEEEEGG
T ss_pred EEEEe-cCCCCCcHHHHHHHHHhccCCCeEEEecCCCCCCCCCEEEECCceecce
Confidence 45677 68899999998853 22 122445566 99999998765
No 74
>PF02594 DUF167: Uncharacterised ACR, YggU family COG1872; InterPro: IPR003746 This entry describes proteins of unknown function. Structures for two of these proteins, YggU from Escherichia coli and MTH637 from the archaea Methanobacterium thermoautotrophicum, have been determined; they have a core 2-layer alpha/beta structure consisting of beta(2)-loop-alpha-beta(2)-alpha [, ].; PDB: 1YH5_A 1N91_A 1JRM_A.
Probab=32.80 E-value=1e+02 Score=27.25 Aligned_cols=43 Identities=16% Similarity=0.337 Sum_probs=29.1
Q ss_pred ceEEEECCCCcEEEEeCCCCh-----HHHHHHHHHHhCCCCCcEEEEe
Q 002311 344 TALAVPDEDNCLVVYSSIQCP-----EYAHATIARCLGIPEHNVRVIT 386 (937)
Q Consensus 344 ~avA~~~~dg~l~V~~stQ~p-----~~~r~~lA~~Lglp~~kVrV~~ 386 (937)
..+.-+.++|.|.|....+-- ..+.+.||+.|++|.++|+++.
T Consensus 17 ~~i~~~~~~~~l~i~v~app~~GkAN~ali~~La~~l~v~ks~i~i~~ 64 (77)
T PF02594_consen 17 NAIVGVEGDGALKIRVTAPPVDGKANKALIRFLAKALGVPKSDIEIVS 64 (77)
T ss_dssp -EEEEE-TTT-EEEEBSTTCCCCCHHHHHHHHHHHHCT--TTCEEECC
T ss_pred cccccccCceEEEEEEecCCCcChhHHHHHHHHHHHhCCCcccEEEEe
Confidence 345444444678888877643 5788899999999999999975
No 75
>PRK05090 hypothetical protein; Validated
Probab=30.42 E-value=1.1e+02 Score=28.42 Aligned_cols=45 Identities=7% Similarity=-0.009 Sum_probs=39.6
Q ss_pred cCCcEEEEeccccccccHHHHHHHHHHHHhcccccCCCCCCCCcEEEecCCCc
Q 002311 618 SDGSVVVEVGGIELGQGLWTKVKQMAAFALSSIQCGGMGDLLETVRVIQADTL 670 (937)
Q Consensus 618 ~DG~v~v~~g~~e~GqG~~T~~aqiaAe~Lgi~~~~~~~~~~~~I~v~~~dT~ 670 (937)
.+|.+.|...+.+.--=.+..+....|+.||+ |.++|++..|.|+
T Consensus 30 ~~~~lkv~v~ApPveGkAN~ali~~LAk~l~v--------~ks~I~i~~G~ts 74 (95)
T PRK05090 30 HGDELKVAITAPPVDGQANAHLLKFLAKQFRV--------AKSQVVIEKGELG 74 (95)
T ss_pred cCCEEEEEEecCCCCChHHHHHHHHHHHHhCC--------ChhhEEEEecCCC
Confidence 46788888888888767789999999999999 9999999999885
No 76
>PLN03136 Ferredoxin; Provisional
Probab=28.94 E-value=67 Score=32.18 Aligned_cols=36 Identities=17% Similarity=0.257 Sum_probs=26.4
Q ss_pred EEEEEECCEEEEEecCCCCCChHHHHhccCCCccCCCce
Q 002311 13 SVVFAVNGEKFEVSSVDPSTTLLEFLRYHTRFKSVKLGC 51 (937)
Q Consensus 13 ~i~~~~Ng~~~~~~~~~p~~~Ll~~LR~~~~l~g~k~gC 51 (937)
+|.|.-++..+++ +++++++|||.++++ |+ .+..+|
T Consensus 56 ~V~l~~~~~~~~~-~~~~g~tILdAa~~~-Gi-~lp~sC 91 (148)
T PLN03136 56 KVKFITPEGEQEV-ECEEDVYVLDAAEEA-GI-DLPYSC 91 (148)
T ss_pred EEEEecCCCcEEE-EeCCCCcHHHHHHHc-CC-CCCcCC
Confidence 4555445555677 688999999999876 75 677777
No 77
>PRK01530 hypothetical protein; Reviewed
Probab=28.19 E-value=1.1e+02 Score=28.78 Aligned_cols=44 Identities=9% Similarity=-0.013 Sum_probs=38.3
Q ss_pred CCcEEEEeccccccccHHHHHHHHHHHHhcccccCCCCCCCCcEEEecCCCc
Q 002311 619 DGSVVVEVGGIELGQGLWTKVKQMAAFALSSIQCGGMGDLLETVRVIQADTL 670 (937)
Q Consensus 619 DG~v~v~~g~~e~GqG~~T~~aqiaAe~Lgi~~~~~~~~~~~~I~v~~~dT~ 670 (937)
+|.+.|...+.+.--=.+..+....|..||+ |..+|+++.|.|+
T Consensus 38 ~~~Lki~v~ApPvdGkAN~ali~~LAk~l~v--------~ks~I~IvsG~tS 81 (105)
T PRK01530 38 IPYLKLSIKAIPEQGKANEEIINYLAKEWKL--------SRSNIEIIKGHTH 81 (105)
T ss_pred CCEEEEEEecCCCCChHHHHHHHHHHHHhCC--------ChhhEEEEecCCC
Confidence 4678888888877667788999999999999 9999999999885
No 78
>PLN02593 adrenodoxin-like ferredoxin protein
Probab=27.77 E-value=59 Score=31.11 Aligned_cols=36 Identities=28% Similarity=0.390 Sum_probs=27.3
Q ss_pred EEEE-EECCEEEEEecCCCCCChHHHHhccCCCccCCCce
Q 002311 13 SVVF-AVNGEKFEVSSVDPSTTLLEFLRYHTRFKSVKLGC 51 (937)
Q Consensus 13 ~i~~-~~Ng~~~~~~~~~p~~~Ll~~LR~~~~l~g~k~gC 51 (937)
+|+| ...|+.+++ .+.++++||+.+++. |+ ..-..|
T Consensus 2 ~V~fi~~~G~~~~v-~~~~G~tLl~a~~~~-gi-~i~~~C 38 (117)
T PLN02593 2 SVTFVDKDGEERTV-KAPVGMSLLEAAHEN-DI-ELEGAC 38 (117)
T ss_pred EEEEEcCCCCEEEE-EECCCCcHHHHHHHc-CC-CCCccC
Confidence 5777 488988888 688999999999975 55 243344
No 79
>PF06971 Put_DNA-bind_N: Putative DNA-binding protein N-terminus; InterPro: IPR009718 This entry represents the C terminus (approximately 30 residues) of a number of Rex proteins. These are redox-sensing repressors that appear to be widespread among Gram-positive bacteria []. They modulate transcription in response to changes in cellular NADH/NAD(+) redox state. Rex is predicted to include a pyridine nucleotide-binding domain (Rossmann fold), and residues that might play key structural and nucleotide binding roles are highly conserved.; GO: 0045892 negative regulation of transcription, DNA-dependent, 0051775 response to redox state, 0005737 cytoplasm; PDB: 3IL2_B 3IKT_A 3IKV_B 1XCB_F 2DT5_A 2VT3_A 2VT2_A 3KEO_B 3KET_A 3KEQ_A ....
Probab=26.86 E-value=49 Score=26.82 Aligned_cols=17 Identities=24% Similarity=0.268 Sum_probs=14.2
Q ss_pred HHHHHHcCCCHHHHHHh
Q 002311 522 EHVASTLSMEVDFVRSI 538 (937)
Q Consensus 522 D~lA~~lG~DP~e~R~k 538 (937)
.+||+.+|++|..+|+.
T Consensus 32 ~~La~~~gi~~~qVRKD 48 (50)
T PF06971_consen 32 QELAEALGITPAQVRKD 48 (50)
T ss_dssp HHHHHHHTS-HHHHHHH
T ss_pred HHHHHHHCCCHHHhccc
Confidence 48999999999999974
No 80
>COG3383 Uncharacterized anaerobic dehydrogenase [General function prediction only]
Probab=26.70 E-value=1.1e+02 Score=38.14 Aligned_cols=54 Identities=19% Similarity=0.321 Sum_probs=40.4
Q ss_pred eEEEEEECCEEEEEecCCCCCChHHHHhccCCCccCC----------Cce----EEEeCccccCCCC--CCCCC
Q 002311 12 HSVVFAVNGEKFEVSSVDPSTTLLEFLRYHTRFKSVK----------LGC----VLVDAEKTHRPEP--PPGFS 69 (937)
Q Consensus 12 ~~i~~~~Ng~~~~~~~~~p~~~Ll~~LR~~~~l~g~k----------~gC----vl~dg~~~~~~~~--~pg~~ 69 (937)
..|+++|||+.+++ .+++|+|++|.++ |+.=.+ .+| |-+||+.+++|.- .-||+
T Consensus 4 ~~i~vtidg~~~~v---~~G~tiL~a~~~~-gI~iP~iCy~~~l~pi~sCd~ClVEidG~l~rsCsT~v~dGm~ 73 (978)
T COG3383 4 KMITVTIDGRSIEV---EEGTTILRAANRN-GIEIPHICYHESLGPIGSCDTCLVEIDGKLVRSCSTPVEDGMV 73 (978)
T ss_pred eeEEEEECCeEEec---CCChHHHHHHHhc-CCcccceeccCCCCcccccceEEEEecCceeccccccccCCcE
Confidence 35899999998865 5899999999764 543322 355 8899998888753 57775
No 81
>PRK13552 frdB fumarate reductase iron-sulfur subunit; Provisional
Probab=25.61 E-value=64 Score=34.95 Aligned_cols=41 Identities=15% Similarity=0.223 Sum_probs=29.8
Q ss_pred EEEEEecCCCCCChHHHHhccC----CCccCCCce---------EEEeCccccCC
Q 002311 21 EKFEVSSVDPSTTLLEFLRYHT----RFKSVKLGC---------VLVDAEKTHRP 62 (937)
Q Consensus 21 ~~~~~~~~~p~~~Ll~~LR~~~----~l~g~k~gC---------vl~dg~~~~~~ 62 (937)
+.+++ ++++++|+||.|..-- .-.+.+.+| |.|||++..+|
T Consensus 24 ~~y~v-~~~~~~tvLdaL~~Ik~~~D~sL~fr~sCr~giCGsCam~ING~~~LAC 77 (239)
T PRK13552 24 VTYQL-EETPGMTLFIALNRIREEQDPSLQFDFVCRAGICGSCAMVINGRPTLAC 77 (239)
T ss_pred EEEEe-cCCCCCCHHHHHHHHHhcCCCCeeEeccCCCCCCCCceeEECCeEhhhh
Confidence 45788 6889999999987421 112445666 89999998876
No 82
>PRK08640 sdhB succinate dehydrogenase iron-sulfur subunit; Reviewed
Probab=25.45 E-value=46 Score=36.23 Aligned_cols=41 Identities=15% Similarity=0.333 Sum_probs=29.4
Q ss_pred EEEEEecCCCCCChHHHHhcc----CCC-------ccCCCce---------EEEeCccccCC
Q 002311 21 EKFEVSSVDPSTTLLEFLRYH----TRF-------KSVKLGC---------VLVDAEKTHRP 62 (937)
Q Consensus 21 ~~~~~~~~~p~~~Ll~~LR~~----~~l-------~g~k~gC---------vl~dg~~~~~~ 62 (937)
+.+++ ++++++|+||.|..- +.+ .+-+.+| |.|||+|..+|
T Consensus 23 q~y~v-~~~~~~tvLdaL~~I~~~~~~~~g~~~~~l~fr~sCr~giCGsCam~ING~p~LAC 83 (249)
T PRK08640 23 EEFEI-PYRPNMNVISALMEIRRNPVNAKGEKTTPVVWDMNCLEEVCGACSMVINGKPRQAC 83 (249)
T ss_pred EEEEe-cCCCCCcHHHHHHHHHhcccccccccCCCeeEecccCCCCCCcCeeEECCccchhh
Confidence 55778 688999999988732 112 2345577 89999998876
No 83
>PRK07860 NADH dehydrogenase subunit G; Validated
Probab=25.31 E-value=1.1e+02 Score=39.16 Aligned_cols=53 Identities=15% Similarity=0.237 Sum_probs=37.2
Q ss_pred EEEEEECCEEEEEecCCCCCChHHHHhccCCCc----------cCCCce----EEEeCcc--ccCCC--CCCCCC
Q 002311 13 SVVFAVNGEKFEVSSVDPSTTLLEFLRYHTRFK----------SVKLGC----VLVDAEK--THRPE--PPPGFS 69 (937)
Q Consensus 13 ~i~~~~Ng~~~~~~~~~p~~~Ll~~LR~~~~l~----------g~k~gC----vl~dg~~--~~~~~--~~pg~~ 69 (937)
.|+|+|||+++++ .+++|||+.++.. |.. +....| |-|||.+ +.+|. ...||.
T Consensus 4 ~v~~~idg~~~~~---~~g~til~aa~~~-gi~ip~~C~~~~l~~~g~Cr~C~Vev~g~~~~~~aC~t~v~~gm~ 74 (797)
T PRK07860 4 LVTLTIDGVEVSV---PKGTLVIRAAELL-GIQIPRFCDHPLLDPVGACRQCLVEVEGQRKPQASCTTTVTDGMV 74 (797)
T ss_pred eEEEEECCEEEEe---CCCChHHHHHHHc-CCCCCeecCCCCCCCCcccCccEEEECCCcccccccCCCCCCCcE
Confidence 5899999999876 5899999998753 321 112345 8889975 44554 368985
No 84
>PTZ00490 Ferredoxin superfamily; Provisional
Probab=23.32 E-value=1e+02 Score=30.74 Aligned_cols=28 Identities=29% Similarity=0.361 Sum_probs=22.0
Q ss_pred EEEEEEC---CEEEEEecCCCCCChHHHHhcc
Q 002311 13 SVVFAVN---GEKFEVSSVDPSTTLLEFLRYH 41 (937)
Q Consensus 13 ~i~~~~N---g~~~~~~~~~p~~~Ll~~LR~~ 41 (937)
++++++| |+.+++ +++++.+|++.||++
T Consensus 35 ~v~I~~~~~dG~~~~v-~~~~G~sLLeal~~~ 65 (143)
T PTZ00490 35 KVKVCVKKRDGTHCDV-EVPVGMSLMHALRDV 65 (143)
T ss_pred cEEEEEEcCCCCEEEE-EECCCccHHHHHHHc
Confidence 4555554 677888 699999999999985
No 85
>PRK01964 4-oxalocrotonate tautomerase; Provisional
Probab=23.11 E-value=73 Score=26.64 Aligned_cols=31 Identities=32% Similarity=0.527 Sum_probs=0.0
Q ss_pred HHHHHHHHHhCCCCCcEEEEeccCCC---CCCCC
Q 002311 366 YAHATIARCLGIPEHNVRVITRRVGG---GFGGK 396 (937)
Q Consensus 366 ~~r~~lA~~Lglp~~kVrV~~~~vGG---gFG~K 396 (937)
.+.+.+++.||+|++.|.|.-..+.- ||||+
T Consensus 23 ~it~~l~~~lg~p~~~v~V~i~e~~~~~w~~gg~ 56 (64)
T PRK01964 23 EVTEAISATLDVPKERVRVIVNEVPSSHWGVAGV 56 (64)
T ss_pred HHHHHHHHHhCcChhhEEEEEEEcChHHeeECCE
No 86
>PF08529 NusA_N: NusA N-terminal domain; InterPro: IPR013735 This entry represents the N-terminal RNA polymerase-binding domain of bacterial transcription factors such as NusA (N-utilising substance A). NusA is involved in transcriptional pausing, termination and anti-termination. NusA from Thermotoga maritima contains an N-terminal domain and three RNA-binding domains (one S1 domain and two KH domains). The N-terminal domain consists of a bifurcated coiled beta-sheet within an alpha/beta(3)/alpha/beta/alpha fold, which can be divided into two subdomains: a globular head and a helical body. The globular head subdomain may interact with RNA polymerase, while the helical body displays a similar structure to that of the helical domain in sigma70 [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0031554 regulation of transcription termination, DNA-dependent; PDB: 1K0R_B 1HH2_P 1L2F_A 2KWP_A.
Probab=22.93 E-value=1.2e+02 Score=29.29 Aligned_cols=23 Identities=26% Similarity=0.293 Sum_probs=20.1
Q ss_pred EEEEEECCCCcEEEEEEEEEecC
Q 002311 755 SEVEINLLTGETTIVQSDIIYDC 777 (937)
Q Consensus 755 aeVeVD~~TG~v~V~r~~~v~D~ 777 (937)
++|++|..||+++|-+..-|+|=
T Consensus 42 ~~v~id~~~g~i~v~~~~~VV~d 64 (122)
T PF08529_consen 42 IRVEIDEDTGEIKVYRKKEVVED 64 (122)
T ss_dssp EEEEEETTTTEEEEEEEEEEETT
T ss_pred EEEEEECCCCeEEEEEEeeecCC
Confidence 58999999999999998887765
No 87
>PRK01530 hypothetical protein; Reviewed
Probab=22.07 E-value=1.5e+02 Score=28.03 Aligned_cols=38 Identities=13% Similarity=0.057 Sum_probs=29.4
Q ss_pred ECCCCcEEEEeCCCCh-----HHHHHHHHHHhCCCCCcEEEEe
Q 002311 349 PDEDNCLVVYSSIQCP-----EYAHATIARCLGIPEHNVRVIT 386 (937)
Q Consensus 349 ~~~dg~l~V~~stQ~p-----~~~r~~lA~~Lglp~~kVrV~~ 386 (937)
|++++.|.|....+-. -.+...||+.||+|.++|+++.
T Consensus 35 ~~~~~~Lki~v~ApPvdGkAN~ali~~LAk~l~v~ks~I~Ivs 77 (105)
T PRK01530 35 INNIPYLKLSIKAIPEQGKANEEIINYLAKEWKLSRSNIEIIK 77 (105)
T ss_pred cCCCCEEEEEEecCCCCChHHHHHHHHHHHHhCCChhhEEEEe
Confidence 4434578888777643 4677889999999999999986
No 88
>PRK06259 succinate dehydrogenase/fumarate reductase iron-sulfur subunit; Provisional
Probab=20.98 E-value=84 Score=37.60 Aligned_cols=42 Identities=26% Similarity=0.455 Sum_probs=28.3
Q ss_pred EEEEEecCCCCCChHHHHhccCCCc----cCCCce---------EEEeCccccCCC
Q 002311 21 EKFEVSSVDPSTTLLEFLRYHTRFK----SVKLGC---------VLVDAEKTHRPE 63 (937)
Q Consensus 21 ~~~~~~~~~p~~~Ll~~LR~~~~l~----g~k~gC---------vl~dg~~~~~~~ 63 (937)
+.+++ ++++++|||+.|++....+ ..+.+| |.+||+++.+|.
T Consensus 21 ~~~~v-~~~~~~tvl~al~~~~~~~~~~l~~~~~C~~g~Cg~C~v~v~G~~~laC~ 75 (486)
T PRK06259 21 ESYEV-PVKEGMTVLDALEYINKTYDANIAFRSSCRAGQCGSCAVTINGEPVLACK 75 (486)
T ss_pred EEEEE-eCCCCChHHHHHHHhchhcCCCceecCCCCCCCCCCCEEEECCeEecccc
Confidence 34566 5789999999999632211 224455 889999877654
No 89
>COG1034 NuoG NADH dehydrogenase/NADH:ubiquinone oxidoreductase 75 kD subunit (chain G) [Energy production and conversion]
Probab=20.30 E-value=1.2e+02 Score=38.08 Aligned_cols=63 Identities=24% Similarity=0.328 Sum_probs=42.9
Q ss_pred EEEEECCEEEEEecCCCCCChHHHHhccCCCc----------cCCCce----EEEeC--ccccCCCC--CCCCC-CCCHH
Q 002311 14 VVFAVNGEKFEVSSVDPSTTLLEFLRYHTRFK----------SVKLGC----VLVDA--EKTHRPEP--PPGFS-KLTIS 74 (937)
Q Consensus 14 i~~~~Ng~~~~~~~~~p~~~Ll~~LR~~~~l~----------g~k~gC----vl~dg--~~~~~~~~--~pg~~-~p~~~ 74 (937)
++++|||+++++ +.+.+||+..|+. |+. |.=..| |-++| +++.+|.. +-||+ .-+.+
T Consensus 2 ~tI~IDG~ei~v---~~g~tvLqAa~~a-Gi~IP~fCyh~~ls~~GaCRmClVEveg~~k~~~SC~tpv~dGM~I~T~s~ 77 (693)
T COG1034 2 VTITIDGKEIEV---PEGETVLQAAREA-GIDIPTFCYHPRLSIAGACRMCLVEVEGAPKLVASCATPVTDGMVISTNSE 77 (693)
T ss_pred eEEEECCEEEec---CCCcHHHHHHHHc-CCCCCcccccCCCCcccceeEEEEEecCCCccccccccccCCCeEEecCCH
Confidence 689999999865 5789999999863 432 222344 78889 77888753 56775 44455
Q ss_pred HHHHHH
Q 002311 75 EAEKAI 80 (937)
Q Consensus 75 ei~~~l 80 (937)
+++++-
T Consensus 78 ~vk~~R 83 (693)
T COG1034 78 EVKKAR 83 (693)
T ss_pred HHHHHH
Confidence 555543
Done!