Query 002311
Match_columns 937
No_of_seqs 401 out of 3037
Neff 7.0
Searched_HMMs 29240
Date Mon Mar 25 21:13:38 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002311.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/002311hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3zyv_A AOH1; oxidoreductase, m 100.0 1E-176 4E-181 1685.4 82.9 720 155-911 576-1314(1335)
2 3unc_A Xanthine dehydrogenase/ 100.0 2E-176 6E-181 1672.8 83.9 727 153-911 567-1312(1332)
3 1vlb_A Aldehyde oxidoreductase 100.0 2E-176 6E-181 1629.6 77.9 807 12-909 2-906 (907)
4 1dgj_A Aldehyde oxidoreductase 100.0 2E-175 7E-180 1619.7 76.1 807 12-909 2-906 (907)
5 3nvz_C Xanthine dehydrogenase/ 100.0 3E-164 1E-168 1494.4 77.7 723 158-912 2-743 (755)
6 2w3s_B Xanthine dehydrogenase; 100.0 4E-161 2E-165 1472.3 76.3 719 158-909 2-771 (777)
7 1rm6_A 4-hydroxybenzoyl-COA re 100.0 2E-159 8E-164 1457.1 76.2 709 154-910 6-764 (769)
8 1ffv_B CUTL, molybdoprotein of 100.0 1E-159 5E-164 1463.5 71.8 718 156-909 15-797 (803)
9 1t3q_B Quinoline 2-oxidoreduct 100.0 5E-159 2E-163 1457.4 72.4 715 158-911 13-785 (788)
10 1n62_B Carbon monoxide dehydro 100.0 1E-158 5E-163 1457.4 72.7 716 158-909 20-803 (809)
11 3hrd_A Nicotinate dehydrogenas 100.0 3.6E-97 1E-101 851.6 44.0 404 154-573 3-415 (425)
12 3hrd_B Nicotinate dehydrogenas 100.0 3.2E-66 1.1E-70 575.4 32.5 292 592-909 2-326 (330)
13 3hrd_D Nicotinate dehydrogenas 99.9 1.9E-25 6.3E-30 220.7 7.4 93 11-104 3-155 (160)
14 3nvw_A Xanthine dehydrogenase/ 99.9 6.7E-26 2.3E-30 223.7 4.0 89 12-101 3-163 (164)
15 1ffv_A CUTS, iron-sulfur prote 99.9 5.6E-24 1.9E-28 211.4 6.8 93 11-104 3-155 (163)
16 1n62_A Carbon monoxide dehydro 99.9 1.2E-23 4.1E-28 209.7 6.7 92 11-103 3-155 (166)
17 1rm6_C 4-hydroxybenzoyl-COA re 99.8 2.3E-21 7.8E-26 193.1 6.2 94 10-104 1-154 (161)
18 2w3s_A Xanthine dehydrogenase; 99.8 1.3E-20 4.4E-25 217.7 4.5 89 12-101 1-150 (462)
19 1t3q_A Quinoline 2-oxidoreduct 99.7 2.1E-18 7.2E-23 173.3 5.7 93 10-103 8-160 (168)
20 1l5p_A Ferredoxin; [2Fe-2S] cl 93.1 0.083 2.8E-06 47.0 4.6 37 13-51 2-38 (93)
21 1rm6_A 4-hydroxybenzoyl-COA re 91.6 2.9 0.0001 51.2 17.2 188 340-530 457-746 (769)
22 1t3q_B Quinoline 2-oxidoreduct 90.6 1.5 5.1E-05 53.9 13.2 184 342-528 484-761 (788)
23 1n62_B Carbon monoxide dehydro 89.7 7.5 0.00026 47.8 18.4 183 343-528 507-781 (809)
24 1iue_A Ferredoxin; electron tr 89.6 0.43 1.5E-05 42.7 5.5 39 10-51 1-39 (98)
25 1dgj_A Aldehyde oxidoreductase 89.6 1.5 5.1E-05 54.7 12.2 186 340-530 631-889 (907)
26 1a70_A Ferredoxin; iron-sulfur 89.4 0.46 1.6E-05 42.4 5.5 38 11-51 2-39 (97)
27 3zyv_A AOH1; oxidoreductase, m 88.8 4.7 0.00016 52.4 16.3 92 9-100 5-167 (1335)
28 3vr8_B Iron-sulfur subunit of 88.2 0.26 9E-06 52.9 3.5 41 21-62 55-109 (282)
29 2l32_A Small archaeal modifier 88.2 0.42 1.4E-05 40.7 4.1 48 12-61 1-48 (74)
30 2wdq_B Succinate dehydrogenase 87.7 0.23 7.8E-06 51.9 2.6 42 21-63 21-76 (238)
31 2wlb_A ETP1-FD, electron trans 87.6 0.34 1.2E-05 43.7 3.4 39 10-51 2-41 (103)
32 3hrd_A Nicotinate dehydrogenas 86.6 1.6 5.5E-05 49.6 9.0 120 609-780 188-309 (425)
33 1jq4_A Methane monooxygenase c 86.4 0.46 1.6E-05 42.4 3.5 37 12-51 3-42 (98)
34 1awd_A Ferredoxin; electron tr 84.3 1.6 5.3E-05 38.6 6.0 36 13-51 2-37 (94)
35 1wri_A Ferredoxin II, ferredox 83.5 1.4 4.9E-05 38.8 5.3 36 12-51 2-37 (93)
36 3hrd_B Nicotinate dehydrogenas 82.8 2.2 7.7E-05 46.8 7.7 59 340-398 21-90 (330)
37 2bs2_B Quinol-fumarate reducta 81.6 1 3.4E-05 47.0 4.2 42 21-63 24-78 (241)
38 1frd_A Heterocyst [2Fe-2S] fer 81.2 1.6 5.4E-05 38.8 4.8 38 11-51 2-41 (98)
39 2k5p_A THis protein, thiamine- 80.1 1.3 4.5E-05 38.0 3.6 44 15-61 2-46 (78)
40 1tyg_B YJBS; alpha beta barrel 77.8 1.5 5E-05 38.6 3.3 44 11-60 18-63 (87)
41 3nvz_C Xanthine dehydrogenase/ 76.4 2.2 7.5E-05 52.1 5.5 59 340-398 444-513 (755)
42 2kl0_A Putative thiamin biosyn 76.1 2.3 8E-05 35.9 4.0 39 15-60 2-41 (73)
43 1czp_A Ferredoxin I; [2Fe-2S] 75.3 3 0.0001 37.0 4.8 38 11-51 2-41 (98)
44 1frr_A Ferredoxin I; electron 73.5 2.8 9.7E-05 36.8 4.1 36 12-51 2-38 (95)
45 2h88_B Succinate dehydrogenase 73.0 1.7 5.8E-05 45.7 2.9 41 21-62 31-85 (252)
46 3lxf_A Ferredoxin; iron, iron- 71.3 2.7 9.2E-05 37.9 3.4 37 13-51 2-39 (104)
47 1vlb_A Aldehyde oxidoreductase 71.2 9.1 0.00031 47.7 9.3 60 609-687 370-429 (907)
48 3hui_A Ferredoxin; cytochrome 69.5 3.1 0.00011 39.0 3.5 38 12-51 22-60 (126)
49 1ffv_B CUTL, molybdoprotein of 69.2 9.5 0.00033 46.9 8.8 58 609-685 216-274 (803)
50 1xlq_A Putidaredoxin, PDX; [2F 68.2 2.8 9.5E-05 37.7 2.9 37 13-51 2-39 (106)
51 3c8y_A Iron hydrogenase 1; dit 67.8 3.9 0.00013 48.3 4.8 52 14-69 2-71 (574)
52 1kf6_B Fumarate reductase iron 67.2 2.2 7.7E-05 44.4 2.3 41 21-63 24-78 (243)
53 1uwm_A Ferredoxin VI, FDVI; el 67.0 3.3 0.00011 37.2 3.1 37 13-51 2-39 (106)
54 2w3s_B Xanthine dehydrogenase; 66.7 12 0.00041 45.8 8.9 57 609-685 178-234 (777)
55 1f0z_A THis protein; ubiquitin 66.4 2.7 9.4E-05 34.5 2.2 40 15-60 2-42 (66)
56 1b9r_A Protein (terpredoxin); 63.8 2.7 9.2E-05 37.8 1.8 37 13-51 2-39 (105)
57 1ryj_A Unknown; beta/alpha pro 61.6 4.5 0.00015 33.7 2.7 43 13-61 4-51 (70)
58 3unc_A Xanthine dehydrogenase/ 58.1 22 0.00074 46.2 9.3 91 13-103 5-166 (1332)
59 1i7h_A Ferredoxin; 2Fe-2S,elec 54.9 5.6 0.00019 36.1 2.3 36 13-51 3-42 (111)
60 2cu3_A Unknown function protei 48.8 11 0.00037 30.6 2.9 38 16-60 2-40 (64)
61 2bt6_A Adrenodoxin 1; rutheniu 43.1 13 0.00045 33.3 2.8 30 13-44 8-38 (108)
62 2kwp_A Transcription elongatio 40.1 25 0.00084 33.0 4.3 28 755-784 45-72 (129)
63 2y5c_A Adrenodoxin-like protei 39.9 20 0.00067 32.3 3.5 36 13-51 7-43 (109)
64 1v2y_A 3300001G02RIK protein; 28.7 28 0.00095 31.4 2.5 30 7-37 3-33 (105)
65 1n91_A ORF, hypothetical prote 28.1 65 0.0022 29.2 4.7 46 618-671 34-79 (108)
66 3abf_A 4-oxalocrotonate tautom 27.0 32 0.0011 27.1 2.4 31 367-397 24-57 (64)
67 3i9v_3 NADH-quinone oxidoreduc 26.1 65 0.0022 39.3 5.9 25 14-41 2-26 (783)
68 2kmm_A Guanosine-3',5'-BIS(dip 26.0 26 0.00089 28.7 1.7 44 12-60 1-47 (73)
69 2jv8_A Uncharacterized protein 25.0 44 0.0015 26.3 2.6 38 14-51 19-73 (73)
70 1v86_A DNA segment, CHR 7, way 20.2 1E+02 0.0034 26.8 4.4 37 9-46 15-51 (95)
No 1
>3zyv_A AOH1; oxidoreductase, molybdenum cofactor; HET: MTE FAD; 2.54A {Mus musculus}
Probab=100.00 E-value=1.1e-176 Score=1685.38 Aligned_cols=720 Identities=35% Similarity=0.566 Sum_probs=658.2
Q ss_pred CCCCCCCCccCCcccccccccccccccCCCCCCcEEEEEEecCCCCeEEEEEecCCcC-CCCEEEEEeccCCCccCCCcc
Q 002311 155 EYFPVGEPIPKSGAALQASGEAIFVDDIPSPINCLYGAFVYSTKPLVRIRSVEIKSKS-LPGVSAFLSYKDIPEAGQNIG 233 (937)
Q Consensus 155 ~~~~vG~~~~R~d~~~kvtG~a~Y~~Di~~~pgmL~a~~vrSp~ahArI~sID~s~A~-~pGVvaV~T~~Dip~~g~~~~ 233 (937)
.+..||+|++|+|+.+||||+++|++|++.+|||||+++||||++||||+|||+|+|+ +|||++|+|++|+| +.+.
T Consensus 576 ~~~~IGk~v~R~d~~~kvtG~a~Y~~Di~~~pgmL~a~~vrSp~aharI~sID~s~A~~~pGV~aV~T~~DiP--~~~~- 652 (1335)
T 3zyv_A 576 LQDPIGRPIMHQSGIKHATGEAVFCDDMSVLPGELFLAVVTSSKSHAKIISLDASEALASLGVVDVVTARDVP--GDNG- 652 (1335)
T ss_dssp TTCCTTSCCCCTTHHHHHHTCCCCSTTSCCCTTCEEEEEEECSSSSEEEEEEECHHHHHSTTEEEEECGGGCS--SCCC-
T ss_pred CCCCCCCCCcCcChHHHCCCcccccccCCCCCCCEEEEEEeCCCCCeEEEEEEhHHHhcCCCeEEEEehhhcC--CcCC-
Confidence 3457999999999999999999999999646899999999999999999999999999 99999999999999 4332
Q ss_pred CCCCCCCcccCCCCceeecCCcEEEEEeCCHHHHHHhcccceEEEccCCCCCCcCCHHHHhcCCCCcccCCcccccccCC
Q 002311 234 SRTKFGPEPLFADELTHCAGQPIAFVVADTQKIANRAADLAVVDYDVGNLEPPILSVEEAVGRSSFFEVPSFLYPKSVGD 313 (937)
Q Consensus 234 ~~~~~~~~p~la~~~Vry~G~pVA~VvAet~~~A~~Aa~lI~Vey~~e~L~p~v~d~~~Al~~~a~~~~~~~~~~~~~Gd 313 (937)
..++|+|++++|||+|||||+|||+|+++|++|+++|+|+| |+|+|.+.++++|++.+++...+ ...+.||
T Consensus 653 ----~~~~~~la~d~Vr~~Gq~VA~VvAet~~~A~~Aa~~V~VeY--e~l~P~v~~~~~a~~~~~~~~~~---~~~~~Gd 723 (1335)
T 3zyv_A 653 ----REEESLYAQDEVICVGQIVCAVAADSYAHAQQAAKKVKIVY--QDIEPMIVTVQDALQYESFIGPE---RKLEQGN 723 (1335)
T ss_dssp ------CCCSSCCSEECSTTCEEEEEEESSHHHHHHHHTTCEEEE--EECSCCCCSHHHHHHTTCCEEEE---EEEEESC
T ss_pred ----CCCcccCCCCeEEEcCCEEEEEEECCHHHHHHHhcCCeEEE--EeCCCccCCHHHHhhcccccCcc---ccccCCC
Confidence 35789999999999999999999999999999999999999 88867789999999987653211 1357899
Q ss_pred hhhhcccCCeEEEEEEEEecccccCCccCCceEEEEC-CCCcEEEEeCCCChHHHHHHHHHHhCCCCCcEEEEeccCCCC
Q 002311 314 ISKGMNEADHKILSAEVKLGSQYYFYMETQTALAVPD-EDNCLVVYSSIQCPEYAHATIARCLGIPEHNVRVITRRVGGG 392 (937)
Q Consensus 314 ~e~af~~A~~vvve~~~~~~~~~h~~mEp~~avA~~~-~dg~l~V~~stQ~p~~~r~~lA~~Lglp~~kVrV~~~~vGGg 392 (937)
++++|++||++ ||++|++++|+|+||||++++|+|+ +||+|+||+|||+|+.+|..||++||||++||||+++++|||
T Consensus 724 ~~~af~~a~~v-ve~~y~~~~~~h~~mEp~~~~a~~~~edg~l~v~~sTQ~p~~~r~~lA~~Lglp~~kVrV~~~~vGGG 802 (1335)
T 3zyv_A 724 VEEAFQCADQI-LEGEVHLGGQEHFYMETQSVRVVPKGEDKEMDIYVSSQDAAFTQEMVARTLGIPKNRINCHVKRVGGA 802 (1335)
T ss_dssp HHHHTTSSSEE-EEEEEEECCBCCCCSSCCEEEEEECSSTTCEEEEECCSCHHHHHHHHHHHHTCCGGGEEEEESCCSCC
T ss_pred HHHHHhhCCeE-EEEEEEECceeccccCCcceEEEEECCCCeEEEEECCcCHHHHHHHHHHHHCCCCceEEEEeCCccCC
Confidence 99999999996 9999999999999999999999998 468999999999999999999999999999999999999999
Q ss_pred CCCCCcccchHHHHHHHHHHhCCCCEEEEcChhhhhhhcCCCCceEEEEEEEECCCCcEEEEEEEEEeeCCCCCCCCC-c
Q 002311 393 FGGKAIKAMPVATACALAAYKLCRPVRIYVNRKTDMVMAGGRHPMKIEYNVGFKSNGKITALQLNILIDAGQYPDVSP-N 471 (937)
Q Consensus 393 FG~K~~~~~~~~~~aAlaA~~~gRPVk~~~~R~E~~~~~~~R~~~~~~~k~g~d~dG~i~A~~~~~~~d~Gay~~~~~-~ 471 (937)
||+|......++++||+||+++||||||+|||+|+|+++++||++.+++|+|+|+||+|+|++++++.|+|+|.+++. +
T Consensus 803 FG~K~~~~~~~~~~aAlaA~~~gRPVK~~~tR~E~~~~~~~R~~~~~~~~~g~d~dG~i~al~~~~~~d~Ga~~~~~~~~ 882 (1335)
T 3zyv_A 803 FGGKASKPGLLASVAAVAAQKTGRPIRFILERRDDMLITGGRHPLLGKYKIGFMNNGKIKAADIQLYINGGCTPDDSELV 882 (1335)
T ss_dssp TTTTSSHHHHHHHHHHHHHHHHCSCEEEECCHHHHHHHSCCBCCEEEEEEEEECTTSCEEEEEEEEEEECCSSCTTHHHH
T ss_pred CCccccCchHHHHHHHHHHHHhCCCEEEEECHHHHHhhcCCCCchheEEEEEecCCCCeeeeeeeeeeccccccccccch
Confidence 999986445567788999999999999999999999999999999999999999999999999999999999998876 4
Q ss_pred hhhhhhccCCCCccccEEEEEEEeecCCCCCCccCCCChhHHHHHHHHHHHHHHHHcCCCHHHHHHhhcCCCCCcccccc
Q 002311 472 IPAYMIGALKKYDWGALHFDIKVCRTNLPSRTAMRAPGEVQGSFIAEAVIEHVASTLSMEVDFVRSINLHTHNSLNLFYE 551 (937)
Q Consensus 472 ~~~~~~~~~~~Y~ipn~~~~~~~v~TN~~p~ga~RG~G~pq~~fa~E~~mD~lA~~lG~DP~e~R~kNl~~~~~~~~~~~ 551 (937)
+.....+..++|++||++++++.|+||++|.|||||||.||++|++|++||++|++|||||+|||+||++++++.
T Consensus 883 ~~~~~~~~~g~Y~ipn~~~~~~~v~TN~~~~~a~RG~G~pq~~fa~E~~mD~lA~~lg~DP~elR~~N~~~~~~~----- 957 (1335)
T 3zyv_A 883 IEYALLKLENAYKIPNLRVRGRVCKTNLPSNTAFRGFGFPQGAFVTETCMSAVAAKCRLPPEKVRELNMYRTIDR----- 957 (1335)
T ss_dssp HHHHHHHTTTTBCCSEEEEEEEEECCSSCCCCCCTTTTHHHHHHHHHHHHHHHHHHHC-CHHHHHHHHBCCSSCB-----
T ss_pred hhhhhhhccCcceeeEEEEEEEEEeccCCCCCcccCCCchhheeEecchhhHHHHHhCCCHHHHHHHhccCCCcc-----
Confidence 455666778999999999999999999999999999999999999999999999999999999999999998753
Q ss_pred CCCCccccC-CHHHHHHHHHHhcCChhhHHHHHHHhhccCCcceeeeecceEeecCCC-----CCceEEEEccCCcEEEE
Q 002311 552 SSAGELEEY-TIPLIWDRLAVSSSFNQRTEVIKEFNRSNLWRKKGISRVPIVYDVPLM-----STPGKVSILSDGSVVVE 625 (937)
Q Consensus 552 ~~~g~~~~~-~~~~~l~~~~~~~~~~~r~~~~~~~~~~~~~~~~Gig~a~~~~~~g~~-----~~~a~v~l~~DG~v~v~ 625 (937)
+++|+++++ .+.+||+++++.++|.+++++..++++.++|++||+|+++..++.|+. ++.+.|+|++||+|+|.
T Consensus 958 ~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~rGi~~~~~~~~~g~~~~~~~~~~a~v~i~~DGsv~v~ 1037 (1335)
T 3zyv_A 958 TIHNQEFDPTNLLQCWEACVENSSYYNRKKAVDEFNQQRFWKKRGIAIIPMKFSVGFPKTFYYQAAALVQIYTDGSVLVA 1037 (1335)
T ss_dssp CTTSCBC--CCHHHHHHHHHHHTTHHHHHHHHHHHHHHCSSSEEEEEEEEEEEECCCSSGGGGCEEEEEEECTTSCEEEC
T ss_pred ccCCcccccccHHHHHHHHHHhhhHHHHHHhhhhhhccCcceeeeeEEEEEEeeccCCcccccceeEEEEEeCCCcEEEE
Confidence 456888776 999999999999999999999999999999999999999988888765 36899999999999999
Q ss_pred eccccccccHHHHHHHHHHHHhcccccCCCCCCCCcEEEecCCCccccCCCCCcccchhhhhHHHHHHHHHHHHHHHHHH
Q 002311 626 VGGIELGQGLWTKVKQMAAFALSSIQCGGMGDLLETVRVIQADTLSVIQGGLTAGSTKSEASCQAVRNCCKILVERLTPL 705 (937)
Q Consensus 626 ~g~~e~GqG~~T~~aqiaAe~Lgi~~~~~~~~~~~~I~v~~~dT~~~p~~~~t~aSr~t~~~g~Av~~Aa~~l~~~l~~~ 705 (937)
+|++|||||++|+++|||||+||| |+|+|+|..+||+.+|++++|+|||+|+++|.||++||++|++||+++
T Consensus 1038 ~G~~e~GQG~~T~~aQiaAe~LGi--------p~e~I~v~~~DT~~~P~~~gt~gSr~t~~~G~Av~~Aa~~l~~rl~~~ 1109 (1335)
T 3zyv_A 1038 HGGVELGQGINTKMIQVASRELKI--------PMSYIHLDEMSTVTVPNTVTTGASTGADVNGRAVQNACQILMKRLEPI 1109 (1335)
T ss_dssp BSCCCSSSCHHHHHHHHHHHHHTS--------CGGGEEECCEETTTSCSCCCSCTTCHHHHHHHHHHHHHHHHHHHTTTH
T ss_pred ECCcCCCCchhHHHHHHHHHHhCC--------CHHHEEEecCCcCCCCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999 999999999999999999999999999999999999999999999998
Q ss_pred HHHHHhccCccCHHHHHHHHHhcCceeEEEEEecCC----------CCccccccEEEEEEEEEEECCCCcEEEEEEEEEe
Q 002311 706 RERLQAQMGSVKWETLIQQAYLQSVSLSASSLYLPD----------FTSMKYLNYGAAVSEVEINLLTGETTIVQSDIIY 775 (937)
Q Consensus 706 aa~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~----------~~~~~~~~~ga~~aeVeVD~~TG~v~V~r~~~v~ 775 (937)
+++. ...+|++++..++...+.|.+.++|.+. +.++++|+||||++|||||++||+|+|+|+++++
T Consensus 1110 a~~~----~~~~~~~~~~~~~~~~v~l~a~~~~~~~~~~~~~~~g~g~~~~~~~~ga~~aEVeVD~~TG~v~V~r~~~v~ 1185 (1335)
T 3zyv_A 1110 IKQN----PSGTWEEWVKEAFVQSISLSATGYFRGYQADMDWEKGEGDIFPYFVFGAACSEVEIDCLTGAHKNIRTDIVM 1185 (1335)
T ss_dssp HHHS----TTSCHHHHHHHHHHTTCCCEEEEEECCCCCEEETTTTEEECCSCEEEEEEEEEEEECTTTCCEEEEEEEEEE
T ss_pred HhhC----CCCCHHHHHHHhhhcccceeEEEEeccCcCCcCcccCcCCcCccCcceEEEEEEEEECCCCcEEEEEEEEEE
Confidence 8754 3468999998888888889888887642 2346778999999999999999999999999999
Q ss_pred cCCccCCccccchhhhchhHHHHHHHhccCceecCCCccccCCCCCCCCCCCCCCCCeeEEEEecCCCCCCCCCCccccC
Q 002311 776 DCGQSLNPAVDLGQIEGSFVQGIGFFMLEEYPTNSDGLVVSEGTWTYKIPTLDTIPKQFNVEILNSGHHKKRVLSSKASG 855 (937)
Q Consensus 776 D~G~vINP~~v~gQi~Ggi~qGiG~AL~Ee~~~d~~G~~l~~~~~dY~iP~~~diP~~i~v~~~e~~~~p~gp~GaKGvG 855 (937)
|||++|||++++||||||++||||+||+||+.||++|+++|+||+||+||++.|+|++++++++++.++|.||||+||+|
T Consensus 1186 D~G~vINP~~~~gQieGG~vqGiG~AL~Ee~~~d~~G~~~t~~~~dY~iP~~~DiP~~~~v~~~~~~~~p~~p~GaKGvG 1265 (1335)
T 3zyv_A 1186 DGSFSINPAVDIGQIEGAFVQGLGLYTLEELKYSPEGVLYTRGPHQYKIASVTDIPEEFHVSLLTPTPNPKAIYSSKGLG 1265 (1335)
T ss_dssp CCSSCSCHHHHHHHHHHHHHHHHHHHHTCCCCBCTTCCBCCCSTTTSCCCCTTTSCSEEEEEECCCCCCTTSGGGCCCCT
T ss_pred ecCcccCHHHHHHHHHHHHHHHHHHHHhCCCEECCCCcCCCCChhhCcCcChhhCCCceEEEEecCCCCCCCCCCCeEee
Confidence 99999999999999999999999999999999999999999999999999999999878888887666899999999999
Q ss_pred CCCccchhhHHHHHHHHHHHHHHhhhcccccCCCCcccccCCCCCHHHHHHhcCCC
Q 002311 856 EPPLLLAVSVHCATRAAIREARKQLLSWSQLDQSDLTFDLEVPATVQVVKELCGPD 911 (937)
Q Consensus 856 E~~~~~~~av~~Ai~nAi~~A~~~~~~~~~~~g~~~~~~~~lP~Tpe~v~~a~~~~ 911 (937)
|+|+++++++++||+|||.+|++++ |..+++++++|+||||||+||+.+
T Consensus 1266 E~g~~~~~~v~~AI~nAv~~A~~~~-------g~~g~~~~~~P~TperV~~A~~d~ 1314 (1335)
T 3zyv_A 1266 EAGTFLGCSVFFAIAAAVAAAREER-------GLSPIWAINSPATAEVIRMACEDQ 1314 (1335)
T ss_dssp TGGGGGGHHHHHHHHHHHHHHHHHC------------CCCCSSCCHHHHHHHSCCT
T ss_pred cccccccchHHHHHHHHHHHHHHhc-------CCCCCcccCCCCCHHHHHHHhhhh
Confidence 9999988889999999999999765 555578899999999999999864
No 2
>3unc_A Xanthine dehydrogenase/oxidase; oxidoreductase; HET: MTE FAD SAL; 1.65A {Bos taurus} PDB: 3una_A* 3uni_A* 1v97_A* 1fo4_A* 1vdv_A* 3am9_A* 3amz_A* 3ax7_A* 3ax9_A* 3bdj_A* 1n5x_A* 2ckj_A* 2e1q_A* 3an1_A* 2e3t_A* 1wyg_A* 3b9j_B* 1fiq_B* 3b9j_A* 1fiq_A*
Probab=100.00 E-value=1.8e-176 Score=1672.82 Aligned_cols=727 Identities=37% Similarity=0.620 Sum_probs=663.9
Q ss_pred ccCCCCCCCCccCCcccccccccccccccCCCCCCcEEEEEEecCCCCeEEEEEecCCcC-CCCEEEEEeccCCCccCCC
Q 002311 153 SREYFPVGEPIPKSGAALQASGEAIFVDDIPSPINCLYGAFVYSTKPLVRIRSVEIKSKS-LPGVSAFLSYKDIPEAGQN 231 (937)
Q Consensus 153 ~~~~~~vG~~~~R~d~~~kvtG~a~Y~~Di~~~pgmL~a~~vrSp~ahArI~sID~s~A~-~pGVvaV~T~~Dip~~g~~ 231 (937)
.++++.||++++|+|+.+||||+++|++|+..+|||||++++|||++||+|+|||+|+|+ +|||++|+|++|+| +.|
T Consensus 567 ~~~~~~iG~~v~R~d~~~kvtG~a~Y~~Di~~~pgmL~a~~vrSp~aha~I~sID~s~A~~~pGV~~V~t~~Dip--~~~ 644 (1332)
T 3unc_A 567 QSKEDTVGRPLPHLAAAMQASGEAVYCDDIPRYENELFLRLVTSTRAHAKIKSIDVSEAQKVPGFVCFLSADDIP--GSN 644 (1332)
T ss_dssp CCTTCCTTSCCCCTTHHHHHHTCSCCGGGSCCBTTCEEEEEEECSSSSEEEEEEECTTGGGSTTEEEEECGGGCS--SCS
T ss_pred ccccCcCCCCCcCcchHHhcccccccccccCCCCCcEEEEEEeCCCCCeeEeeechHHHhcCCCEEEEEeccccC--Ccc
Confidence 456778999999999999999999999999635899999999999999999999999999 99999999999998 443
Q ss_pred ccCCCCCCCcccCCCCceeecCCcEEEEEeCCHHHHHHhcccceEEEccCCCCCCcCCHHHHhcCCCCcccCCccccccc
Q 002311 232 IGSRTKFGPEPLFADELTHCAGQPIAFVVADTQKIANRAADLAVVDYDVGNLEPPILSVEEAVGRSSFFEVPSFLYPKSV 311 (937)
Q Consensus 232 ~~~~~~~~~~p~la~~~Vry~G~pVA~VvAet~~~A~~Aa~lI~Vey~~e~L~p~v~d~~~Al~~~a~~~~~~~~~~~~~ 311 (937)
.. . ...++|+|++++|||+|||||+|||+|+++|++|+++|+|+| |+| |+++|+++|+++++++... .....
T Consensus 645 ~~-g-~~~d~~~la~~~Vry~GqpVa~VvA~t~~~A~~Aa~~v~Vey--e~l-p~v~~~~~A~~~~~~~~~~---~~~~~ 716 (1332)
T 3unc_A 645 ET-G-LFNDETVFAKDTVTCVGHIIGAVVADTPEHAERAAHVVKVTY--EDL-PAIITIEDAIKNNSFYGSE---LKIEK 716 (1332)
T ss_dssp EE-S-TTSCEESSCCSEECSTTCEEEEEEESSHHHHHHHHHTCEEEE--EEC-CCCCSHHHHHHTTCEEEEE---EEEEE
T ss_pred cC-C-CCCCcccccCceEEEcCCeEEEEEECCHHHHHHHhhcCceEE--EcC-CCcCCHHHHhhccCccCCc---ccccc
Confidence 21 1 345899999999999999999999999999999999999999 899 9999999999988753211 14578
Q ss_pred CChhhhcccCCeEEEEEEEEecccccCCccCCceEEEEC-CCCcEEEEeCCCChHHHHHHHHHHhCCCCCcEEEEeccCC
Q 002311 312 GDISKGMNEADHKILSAEVKLGSQYYFYMETQTALAVPD-EDNCLVVYSSIQCPEYAHATIARCLGIPEHNVRVITRRVG 390 (937)
Q Consensus 312 Gd~e~af~~A~~vvve~~~~~~~~~h~~mEp~~avA~~~-~dg~l~V~~stQ~p~~~r~~lA~~Lglp~~kVrV~~~~vG 390 (937)
||++++|++|+++ ||++|++++|+|+||||++++|+|+ ++|+|+||+|||+|+.+|..||++||||++||||+++++|
T Consensus 717 Gd~~~afa~A~~v-ve~~y~~~~~~H~~mEp~~~~A~~~~~~g~l~v~~sTQ~p~~~r~~vA~~Lglp~~kVrV~~~~vG 795 (1332)
T 3unc_A 717 GDLKKGFSEADNV-VSGELYIGGQDHFYLETHCTIAIPKGEEGEMELFVSTQNAMKTQSFVAKMLGVPVNRILVRVKRMG 795 (1332)
T ss_dssp SCHHHHHHHCSEE-EEEEEEECCBCCCCSSCCEEEEEECSSTTCEEEEECCSCHHHHHHHHHHHHTCCGGGEEEEECCCS
T ss_pred CCHhHHhhcCCeE-eeeeEEeCCccccCCCCceEEEEEeCCCCeEEEEECCCCHHHHHHHHHHHhCCCchhEEEEeCCCC
Confidence 9999999999996 9999999999999999999999998 6779999999999999999999999999999999999999
Q ss_pred CCCCCCCcccchHHHHHHHHHHhCCCCEEEEcChhhhhhhcCCCCceEEEEEEEECCCCcEEEEEEEEEeeCCCCCCCCC
Q 002311 391 GGFGGKAIKAMPVATACALAAYKLCRPVRIYVNRKTDMVMAGGRHPMKIEYNVGFKSNGKITALQLNILIDAGQYPDVSP 470 (937)
Q Consensus 391 GgFG~K~~~~~~~~~~aAlaA~~~gRPVk~~~~R~E~~~~~~~R~~~~~~~k~g~d~dG~i~A~~~~~~~d~Gay~~~~~ 470 (937)
||||+|......++++||++|+++||||||+|||+|+|+++++||++.+++|+|+|+||+|+|++++++.|+|+|.+++.
T Consensus 796 GgFG~K~~~~~~~~~~aAlaA~~~gRPVk~~~tR~e~~~~~~~R~~~~~~~~~g~d~dG~i~a~~~~~~~d~Ga~~~~~~ 875 (1332)
T 3unc_A 796 GGFGGKETRSTLVSVAVALAAYKTGHPVRCMLDRNEDMLITGGRHPFLARYKVGFMKTGTIVALEVDHYSNAGNSRDLSH 875 (1332)
T ss_dssp CCTTTTSSTTHHHHHHHHHHHHHHSSCEEEECCHHHHHHHSCCBCCEEEEEEEEECTTSCEEEEEEEEEEEEESSCTTHH
T ss_pred CCCCCCCcccchHHHHHHHHHHHhCCCEEEEecHHHHHhhcCCCCceeEEEEEEECCCCcEEEEEEEEEEcCCcCccccH
Confidence 99999986444567889999999999999999999999999999999999999999999999999999999999988764
Q ss_pred -chhhhhhccCCCCccccEEEEEEEeecCCCCCCccCCCChhHHHHHHHHHHHHHHHHcCCCHHHHHHhhcCCCCCcccc
Q 002311 471 -NIPAYMIGALKKYDWGALHFDIKVCRTNLPSRTAMRAPGEVQGSFIAEAVIEHVASTLSMEVDFVRSINLHTHNSLNLF 549 (937)
Q Consensus 471 -~~~~~~~~~~~~Y~ipn~~~~~~~v~TN~~p~ga~RG~G~pq~~fa~E~~mD~lA~~lG~DP~e~R~kNl~~~~~~~~~ 549 (937)
++...+.++.++|+|||++++++.|+||+|++|||||||.||++|++|++||++|++|||||+|||++|++++++.
T Consensus 876 ~v~~~~~~~~~~~Y~ipn~~~~~~~v~TN~~~~~a~Rg~G~~q~~fa~E~~mDelA~~lG~DP~e~R~~N~~~~g~~--- 952 (1332)
T 3unc_A 876 SIMERALFHMDNCYKIPNIRGTGRLCKTNLSSNTAFRGFGGPQALFIAENWMSEVAVTCGLPAEEVRWKNMYKEGDL--- 952 (1332)
T ss_dssp HHHHHHHHTTTTTBCCSSEEEEEEEEECSSCCCCCCTTTTHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHBCCTTCB---
T ss_pred HHHHHHHHhcCCCccCCcEEEEEEEEeCCCCCCCcccCCCcHHHHHHHHHHHHHHHHHHCcCHHHHHHHhcCCCCCc---
Confidence 4455566778999999999999999999999999999999999999999999999999999999999999987643
Q ss_pred ccCCCCccccC-CHHHHHHHHHHhcCChhhHHHHHHHhhccCCcceeeeecceEeecCCC-----CCceEEEEccCCcEE
Q 002311 550 YESSAGELEEY-TIPLIWDRLAVSSSFNQRTEVIKEFNRSNLWRKKGISRVPIVYDVPLM-----STPGKVSILSDGSVV 623 (937)
Q Consensus 550 ~~~~~g~~~~~-~~~~~l~~~~~~~~~~~r~~~~~~~~~~~~~~~~Gig~a~~~~~~g~~-----~~~a~v~l~~DG~v~ 623 (937)
+++|+++++ .+++||+++++.++|++|++++++||++++|++||+|+++..+|++++ ++++.|+|++||+|+
T Consensus 953 --t~~g~~~~~~~l~~~l~~~~~~~~~~~r~~~~~~~~~~~~~~~rGig~~~~~~g~g~~~~~~~~~~a~v~l~~DGsv~ 1030 (1332)
T 3unc_A 953 --THFNQRLEGFSVPRCWDECLKSSQYYARKSEVDKFNKENCWKKRGLCIIPTKFGISFTVPFLNQAGALIHVYTDGSVL 1030 (1332)
T ss_dssp --CTTCCBCCSCCHHHHHHHHHHHTTHHHHHHHHHHHHHHCSSEEEEEEEEEEEEEESCSSGGGCEEEEEEEECTTSCEE
T ss_pred --CCCCcccCCCCHHHHHHHHHHhcCHHHHHHHHHHhhhcCCcceeeEEEEEEEeeeeccCCCCCcceEEEEEcCCCeEE
Confidence 567888877 999999999999999999988888988899999999999999988864 478999999999999
Q ss_pred EEeccccccccHHHHHHHHHHHHhcccccCCCCCCCCcEEEecCCCccccCCCCCcccchhhhhHHHHHHHHHHHHHHHH
Q 002311 624 VEVGGIELGQGLWTKVKQMAAFALSSIQCGGMGDLLETVRVIQADTLSVIQGGLTAGSTKSEASCQAVRNCCKILVERLT 703 (937)
Q Consensus 624 v~~g~~e~GqG~~T~~aqiaAe~Lgi~~~~~~~~~~~~I~v~~~dT~~~p~~~~t~aSr~t~~~g~Av~~Aa~~l~~~l~ 703 (937)
|.+|++|||||++|+++|||||+||| |+|+|+|..+||+.+|++++|+|||+|+++|+||++||++|++||+
T Consensus 1031 v~~g~~e~GQG~~T~~aQiaAe~LGi--------p~e~V~v~~~DT~~~P~~~~t~aSr~t~~~G~Av~~A~~~l~~rl~ 1102 (1332)
T 3unc_A 1031 VSHGGTEMGQGLHTKMVQVASKALKI--------PISKIYISETSTNTVPNSSPTAASVSTDIYGQAVYEACQTILKRLE 1102 (1332)
T ss_dssp EEESCCCSSSCHHHHHHHHHHHHHTS--------CGGGEECCCEETTTSCSCCCSCTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEECCcCCCCCHHHHHHHHHHHHhCC--------CHHHEEEEcCCCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999 9999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhccCccCHHHHHHHHHhcCceeEEEEEecCC----------CCccccccEEEEEEEEEEECCCCcEEEEEEEE
Q 002311 704 PLRERLQAQMGSVKWETLIQQAYLQSVSLSASSLYLPD----------FTSMKYLNYGAAVSEVEINLLTGETTIVQSDI 773 (937)
Q Consensus 704 ~~aa~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~----------~~~~~~~~~ga~~aeVeVD~~TG~v~V~r~~~ 773 (937)
+++++. ...+|.+++..++...+.|.++++|.++ +.++.+|+||+|++|||||++||+++|+|+++
T Consensus 1103 ~~aa~~----~~~~~~~~~~~a~~~~~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~Ga~~aEVeVD~~TG~v~V~r~~~ 1178 (1332)
T 3unc_A 1103 PFKKKN----PDGSWEDWVMAAYQDRVSLSTTGFYRTPNLGYSFETNSGNAFHYFTYGVACSEVEIDCLTGDHKNLRTDI 1178 (1332)
T ss_dssp HHHHHC----TTSCHHHHHHHHHHTTCCCEEEEEEECCSCCCBTTTTBSCSCSEEEEEEEEEEEEEETTTCCEEEEEEEE
T ss_pred HHHhhC----CCCCHHHHHHHhhccCCceEEEEEEecCCcccccccCCCCCCcccceEEEEEEEEEECCCCcEEEEEEEE
Confidence 998743 3468999988877777788888888642 34567789999999999999999999999999
Q ss_pred EecCCccCCccccchhhhchhHHHHHHHhccCceecCCCccccCCCCCCCCCCCCCCCCeeEEEEecCCCCCCCCCCccc
Q 002311 774 IYDCGQSLNPAVDLGQIEGSFVQGIGFFMLEEYPTNSDGLVVSEGTWTYKIPTLDTIPKQFNVEILNSGHHKKRVLSSKA 853 (937)
Q Consensus 774 v~D~G~vINP~~v~gQi~Ggi~qGiG~AL~Ee~~~d~~G~~l~~~~~dY~iP~~~diP~~i~v~~~e~~~~p~gp~GaKG 853 (937)
++|||++|||.+++||||||++||||+||+||+.||++|+++|++|+||+||++.|+|++|++.++++.++|.+|||+||
T Consensus 1179 v~D~G~~iNP~~~~GQieGG~~qGiG~aL~Ee~~~d~~G~l~t~~~~dY~iP~~~DiP~~~~v~~~~~~~~p~~p~GaKG 1258 (1332)
T 3unc_A 1179 VMDVGSSLNPAIDIGQVEGAFVQGLGLFTLEELHYSPEGSLHTRGPSTYKIPAFGSIPTEFRVSLLRDCPNKKAIYASKA 1258 (1332)
T ss_dssp EEECBSCSCHHHHHHHHHHHHHHHHHHHHTCCCCBCTTSCBCCCSTTTSCCCCGGGSCSEEEEEECSSCCCTTSGGGBCC
T ss_pred EEeCCccCCHHHHHHHHHhhHHHHHHHHHhCcceECCCCCCCCCCHHHcCCcchhhcCCcEEEEEecCCCCCCCCCCccc
Confidence 99999999999999999999999999999999999999999999999999999999996699999984457889999999
Q ss_pred cCCCCccchhhHHHHHHHHHHHHHHhhhcccccCCCCcccccCCCCCHHHHHHhcCCC
Q 002311 854 SGEPPLLLAVSVHCATRAAIREARKQLLSWSQLDQSDLTFDLEVPATVQVVKELCGPD 911 (937)
Q Consensus 854 vGE~~~~~~~av~~Ai~nAi~~A~~~~~~~~~~~g~~~~~~~~lP~Tpe~v~~a~~~~ 911 (937)
+||++++++++|++||.|||++|+.++ ...|..+++++++|+||||||++|+..
T Consensus 1259 vGE~~~~~~~av~~AI~nAv~~A~~~~----~~~g~~g~~~~~~P~Tpe~v~~a~~~~ 1312 (1332)
T 3unc_A 1259 VGEPPLFLGASVFFAIKDAIRAARAQH----TNNNTKELFRLDSPATPEKIRNACVDK 1312 (1332)
T ss_dssp CSSTTGGGGHHHHHHHHHHHHHHHHHH----TCCCTTCCCCCCBSCCHHHHHHHSCCH
T ss_pred cCCcccccchHHHHHHHHHHHHHhhhc----ccccCCCceecCCCCCHHHHHHHHhhH
Confidence 999999998889999999999998211 011333467899999999999999864
No 3
>1vlb_A Aldehyde oxidoreductase; iron-sulphur cluster; HET: PCD; 1.28A {Desulfovibrio gigas} SCOP: a.56.1.1 d.15.4.2 d.41.1.1 d.133.1.1 PDB: 1sij_A* 1zcs_A* 3fah_A* 3fc4_A* 3l4p_A*
Probab=100.00 E-value=1.6e-176 Score=1629.57 Aligned_cols=807 Identities=23% Similarity=0.295 Sum_probs=712.1
Q ss_pred eEEEEEECCEEEEEecCCCCCChHHHHhccCCCccCCCce---------EEEeCccccCC--------------------
Q 002311 12 HSVVFAVNGEKFEVSSVDPSTTLLEFLRYHTRFKSVKLGC---------VLVDAEKTHRP-------------------- 62 (937)
Q Consensus 12 ~~i~~~~Ng~~~~~~~~~p~~~Ll~~LR~~~~l~g~k~gC---------vl~dg~~~~~~-------------------- 62 (937)
++|+|+|||+.+++ +++|+++|||+||++++|||+|.|| |+|||+++++|
T Consensus 2 ~~~~~~~ng~~~~~-~~~~~~~ll~~Lr~~~~l~g~k~gC~~g~CGaCtv~vdg~~~~sC~~~~~~~~~g~~i~Tiegl~ 80 (907)
T 1vlb_A 2 IQKVITVNGIEQNL-FVDAEALLSDVLRQQLGLTGVKVGCEQGQCGACSVILDGKVVRACVTKMKRVADGAQITTIEGVG 80 (907)
T ss_dssp EEEEEEETTEEEEE-EECTTSBHHHHHHHTTCCTTSCCSSSSSSSCTTEEEETTEEEEGGGCBGGGSCTTCEEECHHHHC
T ss_pred ceEEEEECCEEEEE-ecCCCChHHHHHHHhcCCCeecCCCCCCCcCccEEEECCeEeechHhHHHHHcCCCcEEEECCCC
Confidence 36999999999999 7999999999999999999999999 99999988654
Q ss_pred ---------------------CCCCCCC-----------CCCHHHHHHHHh--CCcccCCCCHHHHHHHHHHhhhccccc
Q 002311 63 ---------------------EPPPGFS-----------KLTISEAEKAIA--GNLCRCTGYRPIADACKSFAADVDIED 108 (937)
Q Consensus 63 ---------------------~~~pg~~-----------~p~~~ei~~~l~--gnlCRCtgy~~i~~A~~~~~~~~~~~~ 108 (937)
.|||||+ +||++||+++|+ |||||||||.+|++|++.++.....
T Consensus 81 ~~~~~~~~q~a~~~~~~~qCG~c~pg~~~~~~~ll~~~~~p~~~~i~~~~~~~gn~cRctgY~~i~~a~~~aa~~~~~-- 158 (907)
T 1vlb_A 81 QPENLHPLQKAWVLHGGAQCGFCSPGFIVSAKGLLDTNADPSREDVRDWFQKHRNACRCTGYKPLVDAVMDAAAVING-- 158 (907)
T ss_dssp BTTBCCHHHHHHHHHTCCSSCTTHHHHHHHHHHHHTTCSSCCHHHHHHHHHHTTCCCSSSCSHHHHHHHHHHHHHHTT--
T ss_pred CCcCcCHHHHHHHHcCCCCCCcChHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCccccchHHHHHHHHHHHHhhcc--
Confidence 1566664 689999999999 9999999999999999977643210
Q ss_pred ccccccCCCcchhhhhhhhhcccccccchhhhhccchhhhhhccccCCCCCCCCccCCcccccccccccccccC---CCC
Q 002311 109 LGDRLCGYSNSVLLKDSLMQQNHEQFDKSKVLTLLSSAEQVVRLSREYFPVGEPIPKSGAALQASGEAIFVDDI---PSP 185 (937)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~~~~R~d~~~kvtG~a~Y~~Di---~~~ 185 (937)
. . +.. ...++.+.++++||++++|+|+.+||||+++|++|+ . +
T Consensus 159 --~-------------------~---~~~---------~~~~k~p~~~~~iG~~~~R~d~~~kvtG~a~Y~~D~~~~~-~ 204 (907)
T 1vlb_A 159 --K-------------------K---PET---------DLEFKMPADGRIWGSKYPRPTAVAKVTGTLDYGADLGLKM-P 204 (907)
T ss_dssp --S-------------------S---CGG---------GGSCCCCSSCCCTTSCCCCTTHHHHHTTCSCCHHHHHHTS-C
T ss_pred --C-------------------C---ccc---------cccccCccccccCCCcCccccchhhcCCceeeecccCcCC-C
Confidence 0 0 000 001345667889999999999999999999999999 6 7
Q ss_pred CCcEEEEEEecCCCCeEEEEEecCCcC-CCCEEEEEeccCCCccCCCccCC------CCCCCcccCCCCceeecCCcEEE
Q 002311 186 INCLYGAFVYSTKPLVRIRSVEIKSKS-LPGVSAFLSYKDIPEAGQNIGSR------TKFGPEPLFADELTHCAGQPIAF 258 (937)
Q Consensus 186 pgmL~a~~vrSp~ahArI~sID~s~A~-~pGVvaV~T~~Dip~~g~~~~~~------~~~~~~p~la~~~Vry~G~pVA~ 258 (937)
|||||++++|||++||||+|||+|+|+ +|||++|+|++|+|......+.. ....++|+|++++|||+|||||+
T Consensus 205 ~gmL~a~~vrSp~aharI~sID~s~A~~~pGV~~V~t~~D~p~~~~~~g~~~~~~~~~~~~~~~~la~~~Vr~~Gq~VA~ 284 (907)
T 1vlb_A 205 AGTLHLAMVQAKVSHANIKGIDTSEALTMPGVHSVITHKDVKGKNRITGLITFPTNKGDGWDRPILCDEKVFQYGDCIAL 284 (907)
T ss_dssp TTCEEEEEEECSSSSEEEEEEECHHHHTSTTEEEEECGGGCCSCSEECCSSCCTTCSSCSCCEESSCSSEECSTTCEEEE
T ss_pred CCCeEEEEEecCCCCeEEEEechhHHhcCCCeEEEEEcccCcccccccCccccccccccCCCchhccCCeEEEcCCeEEE
Confidence 999999999999999999999999999 99999999999998321111110 02347899999999999999999
Q ss_pred EEeCCHHHHHHhcccceEEEccCCCCCCcCCHHHHhcCCCC--cccCCccc---ccccCChhhhc-ccCCeEEEEEEEEe
Q 002311 259 VVADTQKIANRAADLAVVDYDVGNLEPPILSVEEAVGRSSF--FEVPSFLY---PKSVGDISKGM-NEADHKILSAEVKL 332 (937)
Q Consensus 259 VvAet~~~A~~Aa~lI~Vey~~e~L~p~v~d~~~Al~~~a~--~~~~~~~~---~~~~Gd~e~af-~~A~~vvve~~~~~ 332 (937)
|||+|+++|++|+++|+|+| |+| |+++|+++|++++++ |+..+|+. ...+||++++| ++|+++ ||++|++
T Consensus 285 VvA~t~~~A~~Aa~~v~Vey--e~l-p~v~~~~~Al~~~a~~i~~~~~n~~~~~~~~~Gd~~~af~a~A~~v-ve~~y~~ 360 (907)
T 1vlb_A 285 VCADSEANARAAAEKVKVDL--EEL-PAYMSGPAAAAEDAIEIHPGTPNVYFEQPIVKGEDTGPIFASADVT-VEGDFYV 360 (907)
T ss_dssp EEESSHHHHHHHHTTCEEEE--EEC-CCCCSHHHHHSTTCCCSSTTSCSEEEEEEEEESSCHHHHHHHCSEE-EEEEEEE
T ss_pred EEECCHHHHHHHhcceEEEE--EcC-CCCCCHHHHHhhcCccccccccccccccccccCChhhhhcccCCeE-EEEEEEE
Confidence 99999999999999999999 899 999999999999885 33213542 34789999999 999986 9999999
Q ss_pred cccccCCccCCceEEEECCCCcEEEEeCCCChHHHHHHHHHHhCCCCCcEEEEeccCCCCCCCCCcccchHHHHHHHHHH
Q 002311 333 GSQYYFYMETQTALAVPDEDNCLVVYSSIQCPEYAHATIARCLGIPEHNVRVITRRVGGGFGGKAIKAMPVATACALAAY 412 (937)
Q Consensus 333 ~~~~h~~mEp~~avA~~~~dg~l~V~~stQ~p~~~r~~lA~~Lglp~~kVrV~~~~vGGgFG~K~~~~~~~~~~aAlaA~ 412 (937)
++|+|+||||++++|+|++||+|+||+|||+|+.+|..||++||||++||||+++++|||||+|.... .++.+|++|+
T Consensus 361 ~~~~h~~mEp~~~~A~~~~~g~l~v~~stQ~p~~~r~~lA~~Lglp~~~VrV~~~~vGGgFG~K~~~~--~~~~aA~~A~ 438 (907)
T 1vlb_A 361 GRQPHMPIEPDVAFAYMGDDGKCYIHSKSIGVHLHLYMIAPGVGLEPDQLVLVANPMGGTFGYKFSPT--SEALVAVAAM 438 (907)
T ss_dssp CCCCCCCSSCCEEEEEECTTSCEEEEESCSCHHHHHHHHHHHHTCCGGGEEEEECCCSCCTTGGGSCS--SHHHHHHHHH
T ss_pred CCccccCCCCCeEEEEEcCCCcEEEEECCcChHHHHHHHHHHhCCChhhEEEEeCcCCCCCCCCcccc--HHHHHHHHHH
Confidence 99999999999999999976799999999999999999999999999999999999999999998643 3677889999
Q ss_pred hCCCCEEEEcChhhhhhhcCCCCceEEEEEEEECCCCcEEEEEEEEEeeCCCCCCCCC-chhhhhhccCCCCccccEEEE
Q 002311 413 KLCRPVRIYVNRKTDMVMAGGRHPMKIEYNVGFKSNGKITALQLNILIDAGQYPDVSP-NIPAYMIGALKKYDWGALHFD 491 (937)
Q Consensus 413 ~~gRPVk~~~~R~E~~~~~~~R~~~~~~~k~g~d~dG~i~A~~~~~~~d~Gay~~~~~-~~~~~~~~~~~~Y~ipn~~~~ 491 (937)
++||||||+|||+|+|+++++||++.+++|+|+|+||+|+|++++++.|+|+|.+++. ++.....+..++|+|||++++
T Consensus 439 ~~grPVkl~~tR~e~~~~~~~R~~~~~~~~~g~d~dG~i~a~~~~~~~d~Gay~~~~~~v~~~~~~~~~~~Y~ipn~~~~ 518 (907)
T 1vlb_A 439 ATGRPVHLRYNYQQQQQYTGKRSPWEMNVKFAAKKDGTLLAMESDWLVDHGPYSEFGDLLTLRGAQFIGAGYNIPNIRGL 518 (907)
T ss_dssp HHSSCEEEECCHHHHHHSSCBCCCEEEEEEEEECTTCCEEEEEEEEEEECTTCCTTHHHHHHHHHHHTTTTBCCCEEEEE
T ss_pred HhCCCEEEEechHHHhhccCCCCceEEEEEEEECCCCCEEEEEEEEEEcCCcccccchHHHHHHHhccCCCcCCCcEEEE
Confidence 9999999999999999999999999999999999999999999999999999998765 334444567899999999999
Q ss_pred EEEeecCCCCCCccCCCChhHHHHHHHHHHHHHHHHcCCCHHHHHHhhcCCCCCccccccCCCCccccC-CHHHHHHHHH
Q 002311 492 IKVCRTNLPSRTAMRAPGEVQGSFIAEAVIEHVASTLSMEVDFVRSINLHTHNSLNLFYESSAGELEEY-TIPLIWDRLA 570 (937)
Q Consensus 492 ~~~v~TN~~p~ga~RG~G~pq~~fa~E~~mD~lA~~lG~DP~e~R~kNl~~~~~~~~~~~~~~g~~~~~-~~~~~l~~~~ 570 (937)
++.|+||++|+|||||||.||++|++|++||++|++|||||+|||+||++++++. +++|+.+++ ++++||++++
T Consensus 519 ~~~v~TN~~~~ga~Rg~G~~q~~fa~E~~mDelA~~lG~DP~e~R~~N~~~~~~~-----~~~g~~~~~~~~~~~l~~~~ 593 (907)
T 1vlb_A 519 GRTVATNHVWGSAFRGYGAPQSMFASECLMDMLAEKLGMDPLELRYKNAYRPGDT-----NPTGQEPEVFSLPDMIDQLR 593 (907)
T ss_dssp EEEECCSSCCBCCCTTTTHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHBCCTTCC-----CTTSCCCSCCCHHHHHHHHH
T ss_pred EEEEcCCCCCCcccCCCChHHHHHHHHHHHHHHHHHhCcCHHHHHHHhcCCCCCc-----CCCCccccCccHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999987753 456777665 8999999999
Q ss_pred HhcCChhhHHHHHHHhhccCCcceeeeecceEeecCCC---CCceEEEEccCCcEEEEeccccccccHHHHHHHHHHHHh
Q 002311 571 VSSSFNQRTEVIKEFNRSNLWRKKGISRVPIVYDVPLM---STPGKVSILSDGSVVVEVGGIELGQGLWTKVKQMAAFAL 647 (937)
Q Consensus 571 ~~~~~~~r~~~~~~~~~~~~~~~~Gig~a~~~~~~g~~---~~~a~v~l~~DG~v~v~~g~~e~GqG~~T~~aqiaAe~L 647 (937)
++ |.+|+++.+.| .+++| +||+|+++..++++++ .++++|+|++||+|+|++|++|||||++|+++|||||+|
T Consensus 594 ~~--w~~r~~~~~~~-~~g~~-~rGiGiA~~~~~~g~~~~~~~~a~v~l~~DG~v~v~~g~~e~GqG~~T~~aQiaAe~L 669 (907)
T 1vlb_A 594 PK--YQAALEKAQKE-STATH-KKGVGISIGVYGSGLDGPDASEAWAELNADGTITVHTAWEDHGQGADIGCVGTAHEAL 669 (907)
T ss_dssp HH--HHHHHHHHHHH-CCSSE-EEEEEEEEEEEESSSTTTCEEEEEEEECTTSCEEEECCCCCSSSCHHHHHHHHHHHHH
T ss_pred HH--HHHhhhhhhhc-cCCCc-eeEEEEEEEEeccccCCCCCccEEEEEeCCCeEEEEECCccCCCCHHHHHHHHHHHHH
Confidence 99 98776655544 34556 6899999999988854 478999999999999999999999999999999999999
Q ss_pred ---cccccCCCCCCCCcEEEecCCCccccCCCCCcccchhhhhHHHHHHHHHHHHHHHHHHHHHHHhccCccCHHHHHHH
Q 002311 648 ---SSIQCGGMGDLLETVRVIQADTLSVIQGGLTAGSTKSEASCQAVRNCCKILVERLTPLRERLQAQMGSVKWETLIQQ 724 (937)
Q Consensus 648 ---gi~~~~~~~~~~~~I~v~~~dT~~~p~~~~t~aSr~t~~~g~Av~~Aa~~l~~~l~~~aa~~~~~~~~~~~~~~~~~ 724 (937)
|| |+|+|+|..+||+.+|++++|+|||+|+++|+||++||++||+||+++++++ ++|++++..
T Consensus 670 ~~~Gi--------p~~~V~v~~~DT~~~p~~~~t~gSr~t~~~G~Av~~Aa~~l~~~l~~~aa~~------l~~~el~~~ 735 (907)
T 1vlb_A 670 RPMGV--------APEKIKFTWPNTATTPNSGPSGGSRQQVMTGNAIRVACENLLKACEKPGGGY------YTYDELKAA 735 (907)
T ss_dssp GGGTC--------CGGGEEECCCBTTTSCCCCCSCTTCHHHHHHHHHHHHHHHHHHHHBCTTSSB------CCHHHHHHT
T ss_pred hhcCC--------CHHHEEEecCCCCCCCCCCCCccchHHHHHHHHHHHHHHHHHHHHHHHhhcc------CCHHHHHhh
Confidence 99 9999999999999999999999999999999999999999999999887633 489999864
Q ss_pred HHhcCceeEEEEEecCC-----------CCccccccEEEEEEEEEEECCCCcEEEEEEEEEecCCccCCccccchhhhch
Q 002311 725 AYLQSVSLSASSLYLPD-----------FTSMKYLNYGAAVSEVEINLLTGETTIVQSDIIYDCGQSLNPAVDLGQIEGS 793 (937)
Q Consensus 725 ~~~~~~~l~~~~~~~~~-----------~~~~~~~~~ga~~aeVeVD~~TG~v~V~r~~~v~D~G~vINP~~v~gQi~Gg 793 (937)
++ .+...+.|..+ +.+|.+|+|+||++|||||++||+++|+|+++++|||++|||++++||||||
T Consensus 736 ~~----~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~ga~~aEVeVD~~TG~v~V~r~~~v~D~G~viNP~~~~gQieGG 811 (907)
T 1vlb_A 736 DK----PTKITGNWTASGATHCDAVTGLGKPFVVYMYGVFMAEVTVDVATGQTTVDGMTLMADLGSLCNQLATDGQIYGG 811 (907)
T ss_dssp TC----CCEEEEEEECTTCBCCCTTTCCSBCCSCEEEEEEEEEEEEETTTCCEEEEEEEEEEECSSCSCHHHHHHHHHHH
T ss_pred cc----cccccceecCCCccccccccCCCCCCCCcceEEEEEEEEEECCCCcEEEEEEEEEEECCccCCHHHHHHHHHHH
Confidence 32 22223333211 1223567999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHhccCceecCCCccccCCCCCCCCCCCCCCCCeeEEEEecCCCCCCCCCCccccCCCCccchhhHHHHHHHHH
Q 002311 794 FVQGIGFFMLEEYPTNSDGLVVSEGTWTYKIPTLDTIPKQFNVEILNSGHHKKRVLSSKASGEPPLLLAVSVHCATRAAI 873 (937)
Q Consensus 794 i~qGiG~AL~Ee~~~d~~G~~l~~~~~dY~iP~~~diP~~i~v~~~e~~~~p~gp~GaKGvGE~~~~~~~av~~Ai~nAi 873 (937)
++||||+||+||+. |+++|+||+||+||++.|+|++|+++++|++ +|.+|||+||+||+++++ +++||+|||
T Consensus 812 ~~qGlG~aL~Ee~~----G~~~~~~~~dY~ip~~~D~P~~i~v~~ve~~-~~~~p~GaKGvGE~~~~~---~~~AIaNAv 883 (907)
T 1vlb_A 812 LAQGIGLALSEDFE----DIKKHATLVGAGFPFIKQIPDKLDIVYVNHP-RPDGPFGASGVGELPLTS---PHAAIINAI 883 (907)
T ss_dssp HHHHHHHHHTCCCC----STTTSSSTTTTTCCCGGGSCSCEEEEECCCC-CTTSGGGCCCCTTGGGSS---HHHHHHHHH
T ss_pred HHHHHHHHHHHHhc----CeeCCCChhhCcCCChHhCCCcEEEEEecCC-CCCCCCcCccccccccch---HHHHHHHHH
Confidence 99999999999997 9999999999999999999965999999985 567999999999999997 678999999
Q ss_pred HHHHHhhhcccccCCCCcccccCCCCCHHHHHHhcC
Q 002311 874 REARKQLLSWSQLDQSDLTFDLEVPATVQVVKELCG 909 (937)
Q Consensus 874 ~~A~~~~~~~~~~~g~~~~~~~~lP~Tpe~v~~a~~ 909 (937)
++|+| ++++++|+|||+||++|+
T Consensus 884 ~~A~G-------------~r~~~lP~tpe~v~~al~ 906 (907)
T 1vlb_A 884 KSATG-------------VRIYRLPAYPEKVLEALK 906 (907)
T ss_dssp HHHHS-------------CCCCBSCCCHHHHHHHHH
T ss_pred HHhhC-------------CccccCCCCHHHHHHHhh
Confidence 99995 678999999999999874
No 4
>1dgj_A Aldehyde oxidoreductase; beta half-barrel, four-helix bundle, beta barrel; HET: MCN; 2.80A {Desulfovibrio desulfuricans} SCOP: a.56.1.1 d.15.4.2 d.41.1.1 d.133.1.1
Probab=100.00 E-value=2e-175 Score=1619.71 Aligned_cols=807 Identities=23% Similarity=0.304 Sum_probs=708.4
Q ss_pred eEEEEEECCEEEEEecCCCCCChHHHHhccCCCccCCCce---------EEEeCccccCC--------------------
Q 002311 12 HSVVFAVNGEKFEVSSVDPSTTLLEFLRYHTRFKSVKLGC---------VLVDAEKTHRP-------------------- 62 (937)
Q Consensus 12 ~~i~~~~Ng~~~~~~~~~p~~~Ll~~LR~~~~l~g~k~gC---------vl~dg~~~~~~-------------------- 62 (937)
++|+|+|||+.+++ +++|+++|||+||++++|||+|.|| |+|||+++++|
T Consensus 2 ~~~~~~~ng~~~~~-~~~~~~~ll~~Lr~~~~l~g~k~gC~~G~CGaCtv~vdg~~v~sC~~~~~~~~~g~~i~TiEgl~ 80 (907)
T 1dgj_A 2 ETKTLIVNGMARRL-LVSPNDLLVDVLRSQLQLTSVKVGCGKGQCGACTVILDGKVVRACIIKMSRVAENASVTTLEGIG 80 (907)
T ss_dssp EEEECEETTBCCEE-EECTTCBHHHHHHHTTCCTTSCCSSSSSSSCTTEEEETTEEEEGGGCBGGGSCTTCEEECGGGTC
T ss_pred ceEEEEECCEEEEE-ecCCCCcHHHHHHHhcCCCccCCCCCCCCcCceEEEECCeEeehhHhHHHHHcCCCcEEEECCCC
Confidence 36999999999999 6999999999999999999999999 99999988754
Q ss_pred ---------------------CCCCCCC-----------CCCHHHHHHHHh--CCcccCCCCHHHHHHHHHHhhhccccc
Q 002311 63 ---------------------EPPPGFS-----------KLTISEAEKAIA--GNLCRCTGYRPIADACKSFAADVDIED 108 (937)
Q Consensus 63 ---------------------~~~pg~~-----------~p~~~ei~~~l~--gnlCRCtgy~~i~~A~~~~~~~~~~~~ 108 (937)
.|||||+ +||++||+++|+ |||||||||.+|++|++.+++...
T Consensus 81 ~~~~~~~~q~a~~~~~~~qCG~c~pg~~~~~~~ll~~~~~p~~~~i~~~~~~~gnlcRctgY~~i~~a~~~aa~~~~--- 157 (907)
T 1dgj_A 81 APDCLHPLQHAWIQHGAAQCGFCTPGFIVSAKALLDENVAPSREDVRDWFQKHHNICRCTGYKPLVDAVMDAAAILR--- 157 (907)
T ss_dssp BTTBCCHHHHHHHHHTCCSSCTTHHHHHHHHHHHHHHCSSCCHHHHHHHHHHTTCCCSSSCSHHHHHHHHHHHHHHT---
T ss_pred CCcccCHHHHHHHHcCCCCCCcChhHHHHHHHHHHhcCCCCCHHHHHHHHHhcCCCcccccHHHHHHHHHHHHHhhc---
Confidence 1566664 689999999999 999999999999999997764310
Q ss_pred ccccccCCCcchhhhhhhhhcccccccchhhhhccchhhhhhccccCCCCCCCCccCCccccccccccccccc--C-CCC
Q 002311 109 LGDRLCGYSNSVLLKDSLMQQNHEQFDKSKVLTLLSSAEQVVRLSREYFPVGEPIPKSGAALQASGEAIFVDD--I-PSP 185 (937)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~~~~R~d~~~kvtG~a~Y~~D--i-~~~ 185 (937)
+. . +.. ...+|.+.++++||++++|+|+.+||||+++|++| + . +
T Consensus 158 ------~~--------------~---~~~---------~~~~k~p~~~~~iG~~~~R~d~~~kvtG~a~Y~~D~~~~~-~ 204 (907)
T 1dgj_A 158 ------GE--------------K---TVE---------EISFKMPADGRIWGSSIPRPSAVAKVTGLAEFGADAALRM-P 204 (907)
T ss_dssp ------TS--------------S---CHH---------HHSCCCCTTCCCTTSCCCCTTHHHHHHTCCCBHHHHGGGS-C
T ss_pred ------cC--------------C---Chh---------hhcccCcccccccCCCCCCcchhhhcCCceEeecCcCccC-C
Confidence 00 0 000 00135567788999999999999999999999999 8 5 7
Q ss_pred CCcEEEEEEecCCCCeEEEEEecCCcC-CCCEEEEEeccCCCccCCCccCC------CCCCCcccCCCCceeecCCcEEE
Q 002311 186 INCLYGAFVYSTKPLVRIRSVEIKSKS-LPGVSAFLSYKDIPEAGQNIGSR------TKFGPEPLFADELTHCAGQPIAF 258 (937)
Q Consensus 186 pgmL~a~~vrSp~ahArI~sID~s~A~-~pGVvaV~T~~Dip~~g~~~~~~------~~~~~~p~la~~~Vry~G~pVA~ 258 (937)
|||||++++|||++||||+|||+|+|+ +|||++|+|++|+|......+.. ....++|+|++++|||+|||||+
T Consensus 205 ~gmL~a~~vrSp~aharI~sID~s~A~~~PGV~~V~t~~D~p~~~~~~g~~~~~~~~~~~~~~~~la~~~Vry~Gq~VA~ 284 (907)
T 1dgj_A 205 ENTLHLALAQAKVSHALIKGIDTSEAEKMPGVYKVLTHKDVKGKNRITGLITFPTNKGDGWERPILNDSKIFQYGDALAI 284 (907)
T ss_dssp TTCEEEEEEECSSSSEEEEEEECHHHHHSTTEEEEECGGGCCSCSEECCSSCCTTCSSCSCCEESSCSSEECSTTCEEEE
T ss_pred CCCeEEEEEecCCCCEEEEeCChHHHhcCCCcEEEEEcccCCccccccCccccccccccCCCcccccCCeEEEcCCeEEE
Confidence 899999999999999999999999999 99999999999998321111110 02347899999999999999999
Q ss_pred EEeCCHHHHHHhcccceEEEccCCCCCCcCCHHHHhcCCCC--cccCCccc---ccccCChhhhc--ccCCeEEEEEEEE
Q 002311 259 VVADTQKIANRAADLAVVDYDVGNLEPPILSVEEAVGRSSF--FEVPSFLY---PKSVGDISKGM--NEADHKILSAEVK 331 (937)
Q Consensus 259 VvAet~~~A~~Aa~lI~Vey~~e~L~p~v~d~~~Al~~~a~--~~~~~~~~---~~~~Gd~e~af--~~A~~vvve~~~~ 331 (937)
|||+|+++|++|+++|+|+| |+| |+++|+++|++++++ |+..+|+. ...+||++++| ++|+++ ||++|+
T Consensus 285 VvAet~~~A~~Aa~~v~Vey--e~l-p~v~~~~~Al~~~a~~i~~~~~n~~~~~~~~~Gd~~~af~~a~A~~v-ve~~y~ 360 (907)
T 1dgj_A 285 VCADSEANARAAAEKVKFDL--ELL-PEYMSAPEAMAPDAIEIHPGTPNVYYDQLEEKGEDTVPFFNDPANVV-AEGSYY 360 (907)
T ss_dssp EEESSHHHHHHHHTTCEEEE--EEC-CCCCSHHHHHSTTCCCSBTTBCSEEEEEEEEESSCSHHHHSCTTSEE-EEEEEE
T ss_pred EEECCHHHHHHHhcccEEEE--EcC-CCCCCHHHHHhhcCcccccccccccceeccccCChhhhhcccCCCEE-EEEEEE
Confidence 99999999999999999999 899 999999999999874 43113542 34789999999 999986 999999
Q ss_pred ecccccCCccCCceEEEECCCCcEEEEeCCCChHHHHHHHHHHhCCC-CCcEEEEeccCCCCCCCCCcccchHHHHHHHH
Q 002311 332 LGSQYYFYMETQTALAVPDEDNCLVVYSSIQCPEYAHATIARCLGIP-EHNVRVITRRVGGGFGGKAIKAMPVATACALA 410 (937)
Q Consensus 332 ~~~~~h~~mEp~~avA~~~~dg~l~V~~stQ~p~~~r~~lA~~Lglp-~~kVrV~~~~vGGgFG~K~~~~~~~~~~aAla 410 (937)
+++|+|+||||++++|+|++||+|+||+|||+|+.+|..||++|||| ++||||+++++|||||+|.... .++.+|++
T Consensus 361 ~~~~~h~~mEp~~~~A~~~~~g~l~v~~stQ~p~~~r~~lA~~Lglp~~~~VrV~~~~vGGgFG~K~~~~--~~~~aA~~ 438 (907)
T 1dgj_A 361 TQRQPHLPIEPDVGYGYINEQGQVVIHSKSVAIHLHALMIAPGLGLEFPKDLVLVQNTTGGTFGYKFSPT--MEALVGVA 438 (907)
T ss_dssp ECCCCCCCSSCCEEEEEECTTSCEEEEECCSCHHHHHHHHHHHHTCCTTTTEEEEECBCSCCTTGGGSCS--SHHHHHHH
T ss_pred ECCccccCCCCCeEEEEEcCCCcEEEEECCcCHHHHHHHHHHHhCCCCCccEEEEeCCCCCCCCCCcccc--HHHHHHHH
Confidence 99999999999999999997679999999999999999999999999 9999999999999999998643 36778899
Q ss_pred HHhCCCCEEEEcChhhhhhhcCCCCceEEEEEEEECCCCcEEEEEEEEEeeCCCCCCCCC-chhhhhhccCCCCccccEE
Q 002311 411 AYKLCRPVRIYVNRKTDMVMAGGRHPMKIEYNVGFKSNGKITALQLNILIDAGQYPDVSP-NIPAYMIGALKKYDWGALH 489 (937)
Q Consensus 411 A~~~gRPVk~~~~R~E~~~~~~~R~~~~~~~k~g~d~dG~i~A~~~~~~~d~Gay~~~~~-~~~~~~~~~~~~Y~ipn~~ 489 (937)
|+++||||||+|||+|+|+++++||++.+++|+|+|+||+|+|++++++.|+|+|.+++. ++.....+..++|+|||++
T Consensus 439 A~~~grPVkl~~tR~e~~~~~~~R~~~~~~~~~g~d~dG~i~a~~~~~~~d~Gay~~~~~~v~~~~~~~~~~~Y~ipn~~ 518 (907)
T 1dgj_A 439 VMATGRPCHLRYNYEQQQNYTGKRSPFWTTMRYAADRQGKILAMETDWSVDHGPYSEFGDLLTLRGAQYIGAGYGIANIR 518 (907)
T ss_dssp HHHHCSCEEEECCHHHHHHSSCBCCCEEEEEEEEECTTSCEEEEEEEEEEECCSCCTTHHHHHHHHHHHTTTTBCCSEEE
T ss_pred HHHhCCCEEEEeehHHHhhhcCCCCceEEEEEEEECCCCCEEEEEEEEEEcCCcccccchHHHHHHHHhcCCCcCCCcEE
Confidence 999999999999999999999999999999999999999999999999999999998765 3344445678999999999
Q ss_pred EEEEEeecCCCCCCccCCCChhHHHHHHHHHHHHHHHHcCCCHHHHHHhhcCCCCCccccccCCCCccccC-CHHHHHHH
Q 002311 490 FDIKVCRTNLPSRTAMRAPGEVQGSFIAEAVIEHVASTLSMEVDFVRSINLHTHNSLNLFYESSAGELEEY-TIPLIWDR 568 (937)
Q Consensus 490 ~~~~~v~TN~~p~ga~RG~G~pq~~fa~E~~mD~lA~~lG~DP~e~R~kNl~~~~~~~~~~~~~~g~~~~~-~~~~~l~~ 568 (937)
++++.|+||++|+|||||||.||++|++|++||++|++|||||+|||+||++++++. +++|+.+++ ++++||++
T Consensus 519 ~~~~~v~Tn~~~~ga~Rg~G~~q~~fa~E~~mDelA~~lG~DP~e~R~~N~~~~~~~-----~~~g~~~~s~~~~~~l~~ 593 (907)
T 1dgj_A 519 GTGRTVATNHCWGAAFRGYGAPESEFPSEVLMDELAEKLGMDPFELRALNCYREGDT-----TSSGQIPEVMSLPEMFDK 593 (907)
T ss_dssp EEEEEECCSSCCBCCCTTTTHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHBCCTTCC-----CTTSCCCSCCCHHHHHHH
T ss_pred EEEEEEcCCCCCCcccCCCCHHHHHHHHHHHHHHHHHHhCcCHHHHHHHhcCCCCCc-----CCCCccccCccHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999987753 456777666 89999999
Q ss_pred HHHhcCChhhHHHHHHHhhccCCcceeeeecceEeecCCC---CCceEEEEccCCcEEEEeccccccccHHHHHHHHHHH
Q 002311 569 LAVSSSFNQRTEVIKEFNRSNLWRKKGISRVPIVYDVPLM---STPGKVSILSDGSVVVEVGGIELGQGLWTKVKQMAAF 645 (937)
Q Consensus 569 ~~~~~~~~~r~~~~~~~~~~~~~~~~Gig~a~~~~~~g~~---~~~a~v~l~~DG~v~v~~g~~e~GqG~~T~~aqiaAe 645 (937)
++++ |.+|+++.+.| .+++| +||+|+++..++++++ .+++.|+|++||+|+|++|++|||||++|+++|||||
T Consensus 594 ~~~~--w~~r~~~~~~~-~~g~~-~rG~Gia~~~~~~g~~~~~~~~a~v~l~~DG~v~v~~g~~e~GqG~~T~~aQiaAe 669 (907)
T 1dgj_A 594 MRPY--YEESKKRVKER-STAEI-KRGVGVALGVYGAGLDGPDTSEAWVELNDDGSVTLGNSWEDHGQGADAGSLGTAHE 669 (907)
T ss_dssp HHHH--HHHHHHHHHTT-CCSSE-EEEEEEEEEEEEESSSSSCEEEEEEEECTTSCEEEEECCCCSSSCHHHHHHHHHHH
T ss_pred HHHH--HHhhhhhhhcc-cCCCe-eEEEEEEEEEecccCCCCCCccEEEEEeCCCeEEEEECCcCCCccHHHHHHHHHHH
Confidence 9999 98766554433 34556 6899999998888754 4789999999999999999999999999999999999
Q ss_pred Hh---cccccCCCCCCCCcEEEecCCCccccCCCCCcccchhhhhHHHHHHHHHHHHHHHHHHHHHHHhccCccCHHHHH
Q 002311 646 AL---SSIQCGGMGDLLETVRVIQADTLSVIQGGLTAGSTKSEASCQAVRNCCKILVERLTPLRERLQAQMGSVKWETLI 722 (937)
Q Consensus 646 ~L---gi~~~~~~~~~~~~I~v~~~dT~~~p~~~~t~aSr~t~~~g~Av~~Aa~~l~~~l~~~aa~~~~~~~~~~~~~~~ 722 (937)
+| || |+|+|+|..+||+.+|++++|+|||+|+++|+||++||++|++||+++++++ ++|+++.
T Consensus 670 ~L~~~Gi--------p~~~V~v~~~DT~~~p~~~~t~gSr~t~~~G~Av~~Aa~~l~~~l~~~aa~~------l~~~~l~ 735 (907)
T 1dgj_A 670 ALRPLGI--------TPENIHLVMNDTSKTPNSGPAGGSRSQVVTGNAIRVACEMLIEGMRKPGGGF------FTPAEMK 735 (907)
T ss_dssp HTGGGTC--------CGGGEEEEESBTTTSCCCCCSCTTCTTTHHHHHHHHHHHHHHHHTBCSSSSB------CCHHHHH
T ss_pred HHhhcCC--------CHHHEEEecCCCCCCCCCCCCccchHHHHHHHHHHHHHHHHHHHHHHHhhhc------CCHHHHh
Confidence 99 99 9999999999999999999999999999999999999999999998887643 2788876
Q ss_pred HHHHhcCceeEEEEEecC-------C--CCccccccEEEEEEEEEEECCCCcEEEEEEEEEecCCccCCccccchhhhch
Q 002311 723 QQAYLQSVSLSASSLYLP-------D--FTSMKYLNYGAAVSEVEINLLTGETTIVQSDIIYDCGQSLNPAVDLGQIEGS 793 (937)
Q Consensus 723 ~~~~~~~~~l~~~~~~~~-------~--~~~~~~~~~ga~~aeVeVD~~TG~v~V~r~~~v~D~G~vINP~~v~gQi~Gg 793 (937)
.. +.-+...+.|.. . +.++.+|+||||++|||||++||+++|+|+++++|||++|||++++||||||
T Consensus 736 -~~---g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ga~~aEVeVD~~TG~v~V~r~~~v~D~G~~iNP~~~~gQieGG 811 (907)
T 1dgj_A 736 -AE---GRPMRYDGKWTAPAKDCDAKGQGSPFACYMYGLFLTEVAVEVATGKATVEKMVCVADIGKICNKLVVDGQIYGG 811 (907)
T ss_dssp -HT---TCCCEEEEEEECSCBCCCTTSCSBCCSEEEEEEEEEEEEEETTTTEEEEEEEEEEEECBSCSCHHHHHHHHHHH
T ss_pred -hC---CeEEEecceeeccCCCcCCCCCCCCCCCCceEEEEEEEEEECCCCcEEEEEEEEEEECCccCCHHHHHHHHHHH
Confidence 21 111222222321 1 1223357999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHhccCceecCCCccccCCCCCCCCCCCCCCCCeeEEEEecCCCCCCCCCCccccCCCCccchhhHHHHHHHHH
Q 002311 794 FVQGIGFFMLEEYPTNSDGLVVSEGTWTYKIPTLDTIPKQFNVEILNSGHHKKRVLSSKASGEPPLLLAVSVHCATRAAI 873 (937)
Q Consensus 794 i~qGiG~AL~Ee~~~d~~G~~l~~~~~dY~iP~~~diP~~i~v~~~e~~~~p~gp~GaKGvGE~~~~~~~av~~Ai~nAi 873 (937)
++||||+||+||+. |+++|+||+||+||++.|+|++|+++++|++ +|.+|||+||+||+++++ +++||+|||
T Consensus 812 ~~qGiG~aL~Ee~~----G~~~~~~~~dY~ip~~~D~P~~i~v~~~e~~-~~~~p~GaKGvGE~~~~~---~~~AIaNAv 883 (907)
T 1dgj_A 812 LAQGVGLALSEDYE----DLKKHSTMGGAGIPSIKMIPDDIEIVYVETP-RKDGPFGASGVGEMPLTA---PHAAIINGI 883 (907)
T ss_dssp HHHHHHHHHTCCCC----STTTTSSTTTTTCCCGGGSCSCEEEEECCCC-CTTSGGGBCCCTTGGGSS---HHHHHHHHH
T ss_pred HHHHHHHHHHHHhc----CeeCCCChhhCcCCChHHCCCcEEEEEecCC-CCCCCCCCcccCccccch---HHHHHHHHH
Confidence 99999999999997 9999999999999999999965999999985 567999999999999997 678999999
Q ss_pred HHHHHhhhcccccCCCCcccccCCCCCHHHHHHhcC
Q 002311 874 REARKQLLSWSQLDQSDLTFDLEVPATVQVVKELCG 909 (937)
Q Consensus 874 ~~A~~~~~~~~~~~g~~~~~~~~lP~Tpe~v~~a~~ 909 (937)
++|+| ++++++|+|||+||++|+
T Consensus 884 ~~A~G-------------~r~~~lP~tpe~v~~al~ 906 (907)
T 1dgj_A 884 YNACG-------------ARVRHLPARPEKVLEAMP 906 (907)
T ss_dssp HHHHS-------------CCCCBSCCCHHHHHHTCC
T ss_pred HHhhC-------------CccccCCCCHHHHHHHhh
Confidence 99995 678999999999999885
No 5
>3nvz_C Xanthine dehydrogenase/oxidase; hydroxylase, homodimer, xanthine oxidase, indole-3-aldehyde, oxidoreductase; HET: FAD MTE I3A; 1.60A {Bos taurus} PDB: 3ns1_C* 3etr_C* 3nvv_C* 3nvw_C* 3nrz_C* 3nvy_C* 3eub_C* 3b9j_C* 1fiq_C* 3rca_C* 3sr6_C*
Probab=100.00 E-value=3.1e-164 Score=1494.43 Aligned_cols=723 Identities=37% Similarity=0.626 Sum_probs=657.9
Q ss_pred CCCCCccCCcccccccccccccccCCCCCCcEEEEEEecCCCCeEEEEEecCCcC-CCCEEEEEeccCCCccCCCccCCC
Q 002311 158 PVGEPIPKSGAALQASGEAIFVDDIPSPINCLYGAFVYSTKPLVRIRSVEIKSKS-LPGVSAFLSYKDIPEAGQNIGSRT 236 (937)
Q Consensus 158 ~vG~~~~R~d~~~kvtG~a~Y~~Di~~~pgmL~a~~vrSp~ahArI~sID~s~A~-~pGVvaV~T~~Dip~~g~~~~~~~ 236 (937)
.||++++|+|+.+||||+++|++|+..+|||||++++|||++||||+|||+|+|+ +|||++|+|++|+| +.|...
T Consensus 2 ~iG~~~~R~d~~~kvtG~a~Y~~Di~~~pgmL~a~~vrSp~aha~I~siD~s~A~~~pGV~~V~t~~d~p--~~~~~g-- 77 (755)
T 3nvz_C 2 TVGRPLPHLAAAMQASGEAVYCDDIPRYENELFLRLVTSTRAHAKIKSIDVSEAQKVPGFVCFLSADDIP--GSNETG-- 77 (755)
T ss_dssp CTTSCCCCTTHHHHHHTCSCCGGGSCCBTTCEEEEEEECSSSSEEEEEEECTTGGGSTTEEEEECGGGCS--SCSEES--
T ss_pred CCCCCCcCcchHHhcccccccccccCCCCCcEEEEEEECCCCCeEEEEeehHHHhcCCCeEEEEEcCCCC--ccccCC--
Confidence 5899999999999999999999999635899999999999999999999999999 99999999999998 433211
Q ss_pred CCCCcccCCCCceeecCCcEEEEEeCCHHHHHHhcccceEEEccCCCCCCcCCHHHHhcCCCCcccCCcccccccCChhh
Q 002311 237 KFGPEPLFADELTHCAGQPIAFVVADTQKIANRAADLAVVDYDVGNLEPPILSVEEAVGRSSFFEVPSFLYPKSVGDISK 316 (937)
Q Consensus 237 ~~~~~p~la~~~Vry~G~pVA~VvAet~~~A~~Aa~lI~Vey~~e~L~p~v~d~~~Al~~~a~~~~~~~~~~~~~Gd~e~ 316 (937)
...++|+|++++|||+|||||+|||+|+++|++|+++|+||| |+| |+++|+++|++++++.... .....||+++
T Consensus 78 ~~~~~~~la~~~Vry~Gq~Va~VvA~t~~~A~~Aa~~v~Vey--e~l-p~v~~~~~a~~~~~~~~~~---~~~~~Gd~~~ 151 (755)
T 3nvz_C 78 LFNDETVFAKDTVTCVGHIIGAVVADTPEHAERAAHVVKVTY--EDL-PAIITIEDAIKNNSFYGSE---LKIEKGDLKK 151 (755)
T ss_dssp TTSCEESSCCSEECSTTCEEEEEEESSHHHHHHHHHTCEEEE--EEC-CCCCSHHHHHHTTCEEEEE---EEEEESCHHH
T ss_pred CCCCcccccCCeEEEcCCeEEEEEECCHHHHHHHhcccceEE--EcC-CCCCCHHHHhhccCccCCC---cccccCCHhH
Confidence 335789999999999999999999999999999999999999 899 9999999999987753211 1357899999
Q ss_pred hcccCCeEEEEEEEEecccccCCccCCceEEEEC-CCCcEEEEeCCCChHHHHHHHHHHhCCCCCcEEEEeccCCCCCCC
Q 002311 317 GMNEADHKILSAEVKLGSQYYFYMETQTALAVPD-EDNCLVVYSSIQCPEYAHATIARCLGIPEHNVRVITRRVGGGFGG 395 (937)
Q Consensus 317 af~~A~~vvve~~~~~~~~~h~~mEp~~avA~~~-~dg~l~V~~stQ~p~~~r~~lA~~Lglp~~kVrV~~~~vGGgFG~ 395 (937)
+|++|+++ ||++|++++|+|+||||++|+|+|+ ++|+|+||+|||+|+.+|..||++||||++||||+++++|||||+
T Consensus 152 a~a~A~~v-ve~~y~~~~~~h~~mEp~~~~A~~~~~~g~l~v~~stQ~p~~~r~~lA~~Lglp~~~VrV~~~~vGGgFG~ 230 (755)
T 3nvz_C 152 GFSEADNV-VSGELYIGGQDHFYLETHCTIAIPKGEEGEMELFVSTQNAMKTQSFVAKMLGVPVNRILVRVKRMGGGFGG 230 (755)
T ss_dssp HHHHCSEE-EEEEEEECCBCCCCSSCCEEEEEECSSTTCEEEEECCSCHHHHHHHHHHHHTCCGGGEEEEECCCSCCTTT
T ss_pred HhhcCCeE-EEEEEEeCCccccCCCCceEEEEEeCCCCeEEEEECCCCHHHHHHHHHHHHCCCCccEEEEECCCCCCCCC
Confidence 99999996 9999999999999999999999998 677999999999999999999999999999999999999999999
Q ss_pred CCcccchHHHHHHHHHHhCCCCEEEEcChhhhhhhcCCCCceEEEEEEEECCCCcEEEEEEEEEeeCCCCCCCCC-chhh
Q 002311 396 KAIKAMPVATACALAAYKLCRPVRIYVNRKTDMVMAGGRHPMKIEYNVGFKSNGKITALQLNILIDAGQYPDVSP-NIPA 474 (937)
Q Consensus 396 K~~~~~~~~~~aAlaA~~~gRPVk~~~~R~E~~~~~~~R~~~~~~~k~g~d~dG~i~A~~~~~~~d~Gay~~~~~-~~~~ 474 (937)
|......++++||++|+++||||||+|||+|+|+++++||++.+++|+|+|+||+|+|++++++.|+|+|.+++. ++..
T Consensus 231 K~~~~~~~~~~aa~aA~~~grPVk~~~tR~e~~~~~~~R~~~~~~~~~g~d~dG~i~a~~~~~~~d~Ga~~~~~~~~~~~ 310 (755)
T 3nvz_C 231 KETRSTLVSVAVALAAYKTGHPVRCMLDRNEDMLITGGRHPFLARYKVGFMKTGTIVALEVDHYSNAGNSRDLSHSIMER 310 (755)
T ss_dssp TSSTTHHHHHHHHHHHHHHSSCEEEECCHHHHHHHSCCBCCEEEEEEEEECTTCCEEEEEEEEEEEEESSCTTHHHHHHH
T ss_pred cccccchHHHHHHHHHHHhCCCEEEEecHHHHHhhcCCCCceEEEEEEEECCCCcEEEEEEEEEEccCcCcCccHHHHHH
Confidence 986434457888999999999999999999999999999999999999999999999999999999999988754 4445
Q ss_pred hhhccCCCCccccEEEEEEEeecCCCCCCccCCCChhHHHHHHHHHHHHHHHHcCCCHHHHHHhhcCCCCCccccccCCC
Q 002311 475 YMIGALKKYDWGALHFDIKVCRTNLPSRTAMRAPGEVQGSFIAEAVIEHVASTLSMEVDFVRSINLHTHNSLNLFYESSA 554 (937)
Q Consensus 475 ~~~~~~~~Y~ipn~~~~~~~v~TN~~p~ga~RG~G~pq~~fa~E~~mD~lA~~lG~DP~e~R~kNl~~~~~~~~~~~~~~ 554 (937)
.+.+..++|+|||++++++.|+||++++|||||||.||++|++|++||+||++|||||+|||+||++++++. +++
T Consensus 311 ~~~~~~~~Y~ipn~~~~~~~v~Tn~~~~~a~Rg~G~~q~~fa~E~~mDelA~~lg~DP~e~R~~N~~~~~~~-----~~~ 385 (755)
T 3nvz_C 311 ALFHMDNCYKIPNIRGTGRLCKTNLSSNTAFRGFGGPQALFIAENWMSEVAVTCGLPAEEVRWKNMYKEGDL-----THF 385 (755)
T ss_dssp HHHTTTTTBCCSSEEEEEEEEECSSCCCCCCTTTTHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHBCCTTCB-----CTT
T ss_pred HHHhcCCCccCCcEEEEEEEEeCCCCCCCcccCCChHHHHHHHHHHHHHHHHHHCcCHHHHHHHhCCCCCCc-----CCC
Confidence 556778999999999999999999999999999999999999999999999999999999999999997643 567
Q ss_pred CccccC-CHHHHHHHHHHhcCChhhHHHHHHHhhccCCcceeeeecceEeecCCC-----CCceEEEEccCCcEEEEecc
Q 002311 555 GELEEY-TIPLIWDRLAVSSSFNQRTEVIKEFNRSNLWRKKGISRVPIVYDVPLM-----STPGKVSILSDGSVVVEVGG 628 (937)
Q Consensus 555 g~~~~~-~~~~~l~~~~~~~~~~~r~~~~~~~~~~~~~~~~Gig~a~~~~~~g~~-----~~~a~v~l~~DG~v~v~~g~ 628 (937)
|+++++ .+++||++++++++|++|+++.+.+|++++|++||+|+++..++++++ ++++.|+|++||+|+|.+|+
T Consensus 386 g~~~~s~~~~~~l~~~~~~~~~~~r~~~~~~~~~~~~~~~rGig~~~~~~g~g~~~~~~~~~~a~v~l~~DG~v~v~~g~ 465 (755)
T 3nvz_C 386 NQRLEGFSVPRCWDECLKSSQYYARKSEVDKFNKENCWKKRGLCIIPTKFGISFTVPFLNQAGALIHVYTDGSVLVSHGG 465 (755)
T ss_dssp CCBCTTCCHHHHHHHHHHHTTHHHHHHHHHHHHHHCSSEEEEEEEEEEEEEESCSSGGGCEEEEEEEECTTSCEEEEESC
T ss_pred CccccCCCHHHHHHHHHHhcCHHHHHHHHHhhhccCCccceeEEEEEEEecccccCCCCCcceEEEEEecCCeEEEEECC
Confidence 888876 999999999999999999988888888889999999999998888764 47899999999999999999
Q ss_pred ccccccHHHHHHHHHHHHhcccccCCCCCCCCcEEEecCCCccccCCCCCcccchhhhhHHHHHHHHHHHHHHHHHHHHH
Q 002311 629 IELGQGLWTKVKQMAAFALSSIQCGGMGDLLETVRVIQADTLSVIQGGLTAGSTKSEASCQAVRNCCKILVERLTPLRER 708 (937)
Q Consensus 629 ~e~GqG~~T~~aqiaAe~Lgi~~~~~~~~~~~~I~v~~~dT~~~p~~~~t~aSr~t~~~g~Av~~Aa~~l~~~l~~~aa~ 708 (937)
+|||||++|+++|||||+||| |+|+|+|..+||+.+|++++|+|||+|+++|+||++||++||+||+++++.
T Consensus 466 ~e~GQG~~T~~aQiaAe~Lgi--------~~e~V~v~~~DT~~~p~~~~t~aSr~t~~~G~Av~~Aa~~l~~~l~~~aa~ 537 (755)
T 3nvz_C 466 TEMGQGLHTKMVQVASKALKI--------PISKIYISETSTNTVPNSSPTAASVSTDIYGQAVYEACQTILKRLEPFKKK 537 (755)
T ss_dssp CCSSSCHHHHHHHHHHHHHTS--------CGGGEECCCEETTTSCSCCCSCTTCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHCC--------CHHHEEEECCCCCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 999999999999999999999 999999999999999999999999999999999999999999999999874
Q ss_pred HHhccCccCHHHHHHHHHhcCceeEEEEEecCC----------CCccccccEEEEEEEEEEECCCCcEEEEEEEEEecCC
Q 002311 709 LQAQMGSVKWETLIQQAYLQSVSLSASSLYLPD----------FTSMKYLNYGAAVSEVEINLLTGETTIVQSDIIYDCG 778 (937)
Q Consensus 709 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~----------~~~~~~~~~ga~~aeVeVD~~TG~v~V~r~~~v~D~G 778 (937)
. ...+|.+++..++...+.|.++++|.++ +.++.+|+||+|++|||||++||+++|+|+++++|||
T Consensus 538 ~----~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~ga~~aeVeVD~~TG~v~v~r~~~v~D~G 613 (755)
T 3nvz_C 538 N----PDGSWEDWVMAAYQDRVSLSTTGFYRTPNLGYSFETNSGNAFHYFTYGVACSEVEIDCLTGDHKNLRTDIVMDVG 613 (755)
T ss_dssp C----TTSCHHHHHHHHHHTTCCCEEEEEEECSSCCCBTTTTBSCSCSEEEEEEEEEEEEEETTTCCEEEEEEEEEEECB
T ss_pred C----CCCCHHHHHHHhhccccceEEEEEEecCCcccccccCCCCCccccceEEEEEEEEEECCCCCEEEEEEEEEEeCC
Confidence 3 3468999887777667788888888642 2345678999999999999999999999999999999
Q ss_pred ccCCccccchhhhchhHHHHHHHhccCceecCCCccccCCCCCCCCCCCCCCCCeeEEEEecCCCCCCCCCCccccCCCC
Q 002311 779 QSLNPAVDLGQIEGSFVQGIGFFMLEEYPTNSDGLVVSEGTWTYKIPTLDTIPKQFNVEILNSGHHKKRVLSSKASGEPP 858 (937)
Q Consensus 779 ~vINP~~v~gQi~Ggi~qGiG~AL~Ee~~~d~~G~~l~~~~~dY~iP~~~diP~~i~v~~~e~~~~p~gp~GaKGvGE~~ 858 (937)
++|||++++||||||++||||+||+||+.||++|+++|+||+||+||++.|+|++|++.++++.++|.+|||+||+||++
T Consensus 614 ~~iNP~~~~GQi~GG~~qGiG~aL~Ee~~~d~~G~~~t~~~~dY~iP~~~DiP~~~~v~~~~~~~~p~~p~GaKGvGE~~ 693 (755)
T 3nvz_C 614 SSLNPAIDIGQVEGAFVQGLGLFTLEELHYSPEGSLHTRGPSTYKIPAFGSIPTEFRVSLLRDCPNKKAIYASKAVGEPP 693 (755)
T ss_dssp SCSCHHHHHHHHHHHHHHHHHHHHTCCCCBCTTSCBCCCSTTTSCCCCGGGSCSEEEEEECSSCCCTTSGGGBCCCSSTT
T ss_pred ccCCHHHHHHHHHhhHHHHHHHHhhCceEECCCCCCCCCCHHhccCCchhhCCCcEEEEEEeCCCCCCCCCCCcccCccc
Confidence 99999999999999999999999999999999999999999999999999999658999998334788999999999999
Q ss_pred ccchhhHHHHHHHHHHHHHHhhhcccccCCCCcccccCCCCCHHHHHHhcCCCc
Q 002311 859 LLLAVSVHCATRAAIREARKQLLSWSQLDQSDLTFDLEVPATVQVVKELCGPDS 912 (937)
Q Consensus 859 ~~~~~av~~Ai~nAi~~A~~~~~~~~~~~g~~~~~~~~lP~Tpe~v~~a~~~~~ 912 (937)
++++++|++||.|||++|+.+. ...|..+++++++|+||||||++|+...
T Consensus 694 ~~~~~av~~Ai~~Av~~A~~~~----~~~g~~g~~~~~~P~Tpe~v~~a~~~~~ 743 (755)
T 3nvz_C 694 LFLGASVFFAIKDAIRAARAQH----TNNNTKELFRLDSPATPEKIRNACVDKF 743 (755)
T ss_dssp GGGGHHHHHHHHHHHHHHHHHH----TCSCTTCCCCCCBSCCHHHHHHHSCSTT
T ss_pred ccchHHHHHHHHHHHHHHhhhc----cccccCCceecCCCCCHHHHHHHHhHHH
Confidence 9998889999999999998210 0013323678999999999999999763
No 6
>2w3s_B Xanthine dehydrogenase; XO, XDH, GOUT, iron, 2Fe-2S, iron-sulfur, oxidoreductase, purine metabolism, molybdenum cofactor, hypoxanthine; HET: MPN FAD XAN; 2.60A {Rhodobacter capsulatus} PDB: 1jrp_B* 2w3r_B* 1jro_B* 2w54_B* 2w55_B*
Probab=100.00 E-value=4.5e-161 Score=1472.29 Aligned_cols=719 Identities=34% Similarity=0.508 Sum_probs=650.7
Q ss_pred CCCCCccCCcccccccccccccccCCCCCCcEEEEEEecCCCCeEEEEEecCCcC-CCCEEEEEeccCCCccCCCccCCC
Q 002311 158 PVGEPIPKSGAALQASGEAIFVDDIPSPINCLYGAFVYSTKPLVRIRSVEIKSKS-LPGVSAFLSYKDIPEAGQNIGSRT 236 (937)
Q Consensus 158 ~vG~~~~R~d~~~kvtG~a~Y~~Di~~~pgmL~a~~vrSp~ahArI~sID~s~A~-~pGVvaV~T~~Dip~~g~~~~~~~ 236 (937)
.||++++|+|+.+||||+++|++|+..+|||||++++|||++||||+|||+|+|+ +|||++|+|++|+| +.|. ...
T Consensus 2 ~iG~~~~R~d~~~kvtG~a~Y~~D~~~~~gmL~a~~vrSp~a~a~I~siD~s~A~~~pGV~~V~t~~d~p--~~~~-~g~ 78 (777)
T 2w3s_B 2 SVGKPLPHDSARAHVTGQARYLDDLPCPANTLHLAFGLSTEASAAITGLDLEPVRESPGVIAVFTAADLP--HDND-ASP 78 (777)
T ss_dssp CTTSCCCCTTHHHHHHTCCCCGGGSCCCTTCEEEEEEECSCSSEEEEEEECHHHHTSTTEEEEEEGGGCS--SCCC-CCS
T ss_pred CCCCCCCCcchHHhccccceeccccCCCCCCEEEEEEECCCCCeEEEEeEhHHHhcCCCcEEEEEcccCC--Cccc-CCC
Confidence 4899999999999999999999999437899999999999999999999999999 99999999999998 3332 112
Q ss_pred CCCCcccCCCCceeecCCcEEEEEeCCHHHHHHhcccceEEEccCCCCCCcCCHHHHhcCCCCcccCCcccccccCChhh
Q 002311 237 KFGPEPLFADELTHCAGQPIAFVVADTQKIANRAADLAVVDYDVGNLEPPILSVEEAVGRSSFFEVPSFLYPKSVGDISK 316 (937)
Q Consensus 237 ~~~~~p~la~~~Vry~G~pVA~VvAet~~~A~~Aa~lI~Vey~~e~L~p~v~d~~~Al~~~a~~~~~~~~~~~~~Gd~e~ 316 (937)
...++|+|++++|||+|||||+|||+|+++|++|+++|+|+| |+| |+++|+++|+++++...... .....||+++
T Consensus 79 ~~~~~~~la~~~Vry~GqpVa~VvA~t~~~A~~Aa~~v~V~y--e~l-p~v~~~~~a~~~~~~~~~~~--~~~~~Gd~~~ 153 (777)
T 2w3s_B 79 APSPEPVLATGEVHFVGQPIFLVAATSHRAARIAARKARITY--APR-PAILTLDQALAADSRFEGGP--VIWARGDVET 153 (777)
T ss_dssp SSSCCCSSCCSEECSTTCEEEEEEESSHHHHHHHHTTCEEEE--EEC-CCCCSHHHHHHHTCBSSSSC--EEEEESCHHH
T ss_pred CCCCcccccCceEEecCCeEEEEEECCHHHHHHHhcceEEEE--EcC-CCCCCHHHHhhccCccccCc--cccccCChhH
Confidence 346889999999999999999999999999999999999999 899 99999999998754321111 2347899999
Q ss_pred hcccCCeEEEEEEEEecccccCCccCCceEEEECCCCcEEEEeCCCChHHHHHHHHHHhCCCCCcEEEEeccCCCCCCCC
Q 002311 317 GMNEADHKILSAEVKLGSQYYFYMETQTALAVPDEDNCLVVYSSIQCPEYAHATIARCLGIPEHNVRVITRRVGGGFGGK 396 (937)
Q Consensus 317 af~~A~~vvve~~~~~~~~~h~~mEp~~avA~~~~dg~l~V~~stQ~p~~~r~~lA~~Lglp~~kVrV~~~~vGGgFG~K 396 (937)
+|++|+++ ||++|++++++|+||||++|+|+|++|| |+||+|||+|+.+|..||++||||++||||+++++|||||+|
T Consensus 154 a~a~A~~v-ve~~y~~~~~~h~~mEp~~~~A~~~~~~-l~v~~stQ~p~~~r~~vA~~Lglp~~~VrV~~~~vGGgFG~K 231 (777)
T 2w3s_B 154 ALAGAAHL-AEGCFEIGGQEHFYLEGQAALALPAEGG-VVIHCSSQHPSEIQHKVAHALGLAFHDVRVEMRRMGGGFGGK 231 (777)
T ss_dssp HHHTCSEE-EEEEEEECCCCCCCSSCCEEEEEEETTE-EEEEESCSCHHHHHHHHHHHHTCCGGGEEEEECCCSCCTTTT
T ss_pred HhhcCCeE-EEEEEEECCccccCCcCCeEEEEEECCc-cEEEECCcCHHHHHHHHHHHHCCCHHHEEEEeCCCCCCCCcC
Confidence 99999997 9999999999999999999999999776 999999999999999999999999999999999999999999
Q ss_pred CcccchHHHHHHHHHHhCCCCEEEEcChhhhhhhcCCCCceEEEEEEEECCCCcEEEEEEEEEeeCCCCCCCCC-chhhh
Q 002311 397 AIKAMPVATACALAAYKLCRPVRIYVNRKTDMVMAGGRHPMKIEYNVGFKSNGKITALQLNILIDAGQYPDVSP-NIPAY 475 (937)
Q Consensus 397 ~~~~~~~~~~aAlaA~~~gRPVk~~~~R~E~~~~~~~R~~~~~~~k~g~d~dG~i~A~~~~~~~d~Gay~~~~~-~~~~~ 475 (937)
....+++++.+|++|+++||||||+|||+|+|+++++||++.+++|+|+|+||+|+|++++++.|+|+|.+++. ++...
T Consensus 232 ~~~~~~~~~~aA~~A~~~grPVkl~~tR~e~~~~~~~R~~~~~~~~~g~d~dG~i~a~~~~~~~d~Ga~~~~~~~v~~~~ 311 (777)
T 2w3s_B 232 ESQGNHLAIACAVAARATGRPCKMRYDRDDDMVITGKRHDFRIRYRIGADASGKLLGADFVHLARCGWSADLSLPVCDRA 311 (777)
T ss_dssp TTTTHHHHHHHHHHHHHHSSCEEEECCHHHHHHHSCCCCCEEEEEEEEECTTSCEEEEEEEEEEECCSSCTTHHHHHHHH
T ss_pred ccccchHHHHHHHHHHHhCCCEEEEecHHHHhhhcCCCCceEEEEEEEECCCCCEEEEEEEEEEcCCcccccchhHHHHH
Confidence 86555678889999999999999999999999999999999999999999999999999999999999987765 33445
Q ss_pred hhccCCCCccccEEEEEEEeecCCCCCCccCCCChhHHHHHHHHHHHHHHHHcCCCHHHHHHhhcCCC------------
Q 002311 476 MIGALKKYDWGALHFDIKVCRTNLPSRTAMRAPGEVQGSFIAEAVIEHVASTLSMEVDFVRSINLHTH------------ 543 (937)
Q Consensus 476 ~~~~~~~Y~ipn~~~~~~~v~TN~~p~ga~RG~G~pq~~fa~E~~mD~lA~~lG~DP~e~R~kNl~~~------------ 543 (937)
+.+..++|+|||++++++.|+||++++|||||||.+|++|++|++||+||++|||||+|||+||++++
T Consensus 312 ~~~~~~~Y~ipn~~~~~~~v~Tn~~~~ga~Rg~G~~q~~fa~E~~mDelA~~lG~DP~e~R~~N~~~~~~~~~~~~~~~~ 391 (777)
T 2w3s_B 312 MLHADGSYFVPALRIESHRLRTNTQSNTAFRGFGGPQGALGMERAIEHLARGMGRDPAELRALNFYDPPERGGLSAPPSP 391 (777)
T ss_dssp HHTTTTTBCCSSEEEEEEEECCSSCCCCCCTTTTHHHHHHHHHHHHHHHHHHTTCCHHHHHHTTBCCCC-----------
T ss_pred HHhcCCccccCCEEEEEEEEeCCCCCCCccCCCChHHHHHHHHHHHHHHHHHhCcCHHHHHHHhccCccccccccccccc
Confidence 56678999999999999999999999999999999999999999999999999999999999999987
Q ss_pred ------CCccccccCCCCccccC-CHHHHHHHHHHhcCChhhHHHHHHHhhccCCcceeeeecceEeecCCC-----CCc
Q 002311 544 ------NSLNLFYESSAGELEEY-TIPLIWDRLAVSSSFNQRTEVIKEFNRSNLWRKKGISRVPIVYDVPLM-----STP 611 (937)
Q Consensus 544 ------~~~~~~~~~~~g~~~~~-~~~~~l~~~~~~~~~~~r~~~~~~~~~~~~~~~~Gig~a~~~~~~g~~-----~~~ 611 (937)
++ |+.+++|+.+++ ++++||+++++.++|.+|++++.++|++++|++||||+++..++.++. .++
T Consensus 392 ~~~~~~~~---p~~~~~g~~~~~~~~~~~l~~~~~~~~~~~r~~~~~~~~~~~~~~~rGiG~a~~~~g~~~~~~~~~~~~ 468 (777)
T 2w3s_B 392 PEPIATKK---TQTTHYGQEVADCVLGELVTRLQKSANFTTRRAEIAAWNSTNRTLARGIALSPVKFGISFTLTHLNQAG 468 (777)
T ss_dssp ------CC---CCBCTTCCBCCCCCHHHHHHHHHHHTTHHHHHHHHHHHHHTCSSEEEEEEEEEEEEECSCSSGGGCEEE
T ss_pred ccccCCCC---CccCCCCccccCCCHHHHHHHHHHhcCHHHHHHHHHHhhcCCCCeeEEEEEEEeeEccccccccCCCCc
Confidence 42 455778888776 899999999999999999888888888887888999999999998753 378
Q ss_pred eEEEEccCCcEEEEeccccccccHHHHHHHHHHHHhcccccCCCCCCCCcEEEecCCCccccCCCCCcccchhhhhHHHH
Q 002311 612 GKVSILSDGSVVVEVGGIELGQGLWTKVKQMAAFALSSIQCGGMGDLLETVRVIQADTLSVIQGGLTAGSTKSEASCQAV 691 (937)
Q Consensus 612 a~v~l~~DG~v~v~~g~~e~GqG~~T~~aqiaAe~Lgi~~~~~~~~~~~~I~v~~~dT~~~p~~~~t~aSr~t~~~g~Av 691 (937)
+.|+|++||+|+|++|++|||||++|+++|||||+||| |+|+|+|..+||+.+|++++|+|||+|+++|+||
T Consensus 469 a~v~l~~DG~v~v~~g~~e~GqG~~T~~aQiaAe~LGi--------p~e~V~v~~~DT~~~p~~~~t~aSr~t~~~G~Av 540 (777)
T 2w3s_B 469 ALVQIYTDGSVALNHGGTEMGQGLHAKMVQVAAAVLGI--------DPVQVRITATDTSKVPNTSATAASSGADMNGMAV 540 (777)
T ss_dssp EEEEECTTSCEEEEESCCCSSSCHHHHHHHHHHHHHTS--------CGGGEEECCEETTTSCSCCCSCTTCHHHHHHHHH
T ss_pred eEEEEccCCeEEEEECCccCCCChhHHHHHHHHHHHCC--------CHHHEEEEcCCCCCCCCCCCCccchHHHHHHHHH
Confidence 99999999999999999999999999999999999999 9999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhc--------c-------CccCHHHHHHHHHhcCceeEEEEEecCCC----------Cccc
Q 002311 692 RNCCKILVERLTPLRERLQAQ--------M-------GSVKWETLIQQAYLQSVSLSASSLYLPDF----------TSMK 746 (937)
Q Consensus 692 ~~Aa~~l~~~l~~~aa~~~~~--------~-------~~~~~~~~~~~~~~~~~~l~~~~~~~~~~----------~~~~ 746 (937)
++||++||+||+++++++++. + ..++|.+++..++..+..|.++++|.++. .++.
T Consensus 541 ~~Aa~~l~~~l~~~aa~~~~~~~~~l~~~~g~v~~~~~~~~~~el~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~g~~~~ 620 (777)
T 2w3s_B 541 KDACETLRGRLAGFVAAREGCAARDVIFDAGQVQASGKSWRFAEIVAAAYMARISLSATGFYATPKLSWDRLRGQGRPFL 620 (777)
T ss_dssp HHHHHHHHHHHHHHHHHHHTSCGGGCEEETTEEEETTEEEEHHHHHHHHHHTTCCCEEEEEEECSSCEEETTTTEEECCS
T ss_pred HHHHHHHHHHHHHHHHHHhCCCHHHEEEECCEEEECCCcccHHHHHHHhhhcCcceEEEEEEeCCCccccccccCCCCcc
Confidence 999999999999999988742 1 14789999988776666787777776532 2345
Q ss_pred cccEEEEEEEEEEECCCCcEEEEEEEEEecCCccCCccccchhhhchhHHHHHHHhccCceecCCCccccCCCCCCCCCC
Q 002311 747 YLNYGAAVSEVEINLLTGETTIVQSDIIYDCGQSLNPAVDLGQIEGSFVQGIGFFMLEEYPTNSDGLVVSEGTWTYKIPT 826 (937)
Q Consensus 747 ~~~~ga~~aeVeVD~~TG~v~V~r~~~v~D~G~vINP~~v~gQi~Ggi~qGiG~AL~Ee~~~d~~G~~l~~~~~dY~iP~ 826 (937)
+|+||+|++|||||++||+++|+|+++++|||++|||++++||||||++||||+||+||+.||++|+++|+||+||+||+
T Consensus 621 ~~~~ga~~aeVeVD~~TG~v~V~r~~~v~D~G~~iNP~~~~GQi~GG~~qGiG~aL~Ee~~~d~~G~~~t~~~~~Y~iP~ 700 (777)
T 2w3s_B 621 YFAYGAAITEVVIDRLTGENRILRTDILHDAGASLNPALDIGQIEGAYVQGAGWLTTEELVWDHCGRLMTHAPSTYKIPA 700 (777)
T ss_dssp CEEEEEEEEEEEEETTTCCEEEEEEEEEEECBSCSCHHHHHHHHHHHHHHHHHHTTTCCCCBCTTSCBSCCSTTTSCCCC
T ss_pred cceeeeEEEEEEEecCCCEEEEEEEEEEEECCccCCHHHHHHHHHhhHHhhhchhheeeeEECCCCCCCCCChHhccCcc
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCeeEEEEecCCCCCCCCCCccccCCCCccchhhHHHHHHHHHHHHHHhhhcccccCCCCcccccCCCCCHHHHHH
Q 002311 827 LDTIPKQFNVEILNSGHHKKRVLSSKASGEPPLLLAVSVHCATRAAIREARKQLLSWSQLDQSDLTFDLEVPATVQVVKE 906 (937)
Q Consensus 827 ~~diP~~i~v~~~e~~~~p~gp~GaKGvGE~~~~~~~av~~Ai~nAi~~A~~~~~~~~~~~g~~~~~~~~lP~Tpe~v~~ 906 (937)
+.|+|++|++.+++++++|.+|||+||+||+++++++++++||.|||.+|++ .++++++|+||||||+
T Consensus 701 ~~DvP~~~~v~~~e~~~~~~~p~gaKGvGE~~~~~~~a~~~Ai~~Ai~~a~g------------~~~~~~~P~Tpe~v~~ 768 (777)
T 2w3s_B 701 FSDRPRIFNVALWDQPNREETIFRSKAVGEPPFLLGISAFLALHDACAACGP------------HWPDLQAPATPEAVLA 768 (777)
T ss_dssp GGGSCSEEEEEEECCCCSSCCGGGBCCCSSGGGGGGHHHHHHHHHHHTTSCS------------SCCCCCSSCCHHHHHH
T ss_pred hhhCCCceEEEEEcCCCCCCCCCCCcccccccccchHHHHHHHHHHHHHhcC------------CceecCCCCCHHHHHH
Confidence 9999955999999976677899999999999999876666777777765542 0467899999999999
Q ss_pred hcC
Q 002311 907 LCG 909 (937)
Q Consensus 907 a~~ 909 (937)
+|+
T Consensus 769 al~ 771 (777)
T 2w3s_B 769 AVR 771 (777)
T ss_dssp HHH
T ss_pred HHh
Confidence 885
No 7
>1rm6_A 4-hydroxybenzoyl-COA reductase alpha subunit; xanthine oxidase family, dimer heterotrimers, oxidoreductase; HET: PCD FAD SF4 EPE; 1.60A {Thauera aromatica} SCOP: d.41.1.1 d.133.1.1 PDB: 1sb3_A*
Probab=100.00 E-value=2.4e-159 Score=1457.12 Aligned_cols=709 Identities=23% Similarity=0.291 Sum_probs=636.9
Q ss_pred cCCCCCCCCccCCcccccccccccccccCCCCCCcEEEEEEecCCCCeEEEEEecCCcC-CCCEEEEEeccCCCccCCCc
Q 002311 154 REYFPVGEPIPKSGAALQASGEAIFVDDIPSPINCLYGAFVYSTKPLVRIRSVEIKSKS-LPGVSAFLSYKDIPEAGQNI 232 (937)
Q Consensus 154 ~~~~~vG~~~~R~d~~~kvtG~a~Y~~Di~~~pgmL~a~~vrSp~ahArI~sID~s~A~-~pGVvaV~T~~Dip~~g~~~ 232 (937)
+++++||++++|+|+.+||||+++|++|+. +|||||++++|||++||||+|||+|+|+ +|||++|+|++|+| + |.
T Consensus 6 ~~~~~iG~~~~R~d~~~kvtG~a~Y~~D~~-~~gmL~a~~vrSp~aharI~siD~s~A~~~pGV~~V~t~~Dip--~-~~ 81 (769)
T 1rm6_A 6 PQHGTVGVRTPLVDGVEKVTGKAKYTADIA-APDALVGRILRSPHAHARILAIDTSAAEALEGVIAVCTGAETP--V-PF 81 (769)
T ss_dssp ---CCTTSCCCCTTHHHHHHTCCCBGGGCC-CTTCEEEEEEECSSSSEEEEEEECHHHHHSTTEEEEEEGGGCC--S-CB
T ss_pred cccCcCCCCCcCcchHHhccceeeehhccC-CCCCEEEEEEECCCCCeEEEeeehhHHhcCCCeEEEEehHHcC--C-cc
Confidence 457789999999999999999999999995 8999999999999999999999999999 99999999999998 3 32
Q ss_pred cCCCCCCCcccCCCCceeecCCcEEEEEeCCHHHHHHhcccceEEEccCCCCCCcCCHHHHhcCCCC--ccc-CCccc--
Q 002311 233 GSRTKFGPEPLFADELTHCAGQPIAFVVADTQKIANRAADLAVVDYDVGNLEPPILSVEEAVGRSSF--FEV-PSFLY-- 307 (937)
Q Consensus 233 ~~~~~~~~~p~la~~~Vry~G~pVA~VvAet~~~A~~Aa~lI~Vey~~e~L~p~v~d~~~Al~~~a~--~~~-~~~~~-- 307 (937)
+......++|+|++++|||+|||||+|||+|+++|++|+++|+|+| |+| |+++|+++|++++++ |+. ++|+.
T Consensus 82 g~~~~~~~~~~la~~~Vry~Gq~VA~VvA~t~~~A~~A~~~v~Vey--e~l-p~v~~~~~al~~~a~~~~~~~~~n~~~~ 158 (769)
T 1rm6_A 82 GVLPIAENEYPLARDKVRYRGDPVAAVAAIDEVTAEKALALIKVDY--EVL-PAYMTPKAAMKAGAIALHDDKPNNILRE 158 (769)
T ss_dssp CSSTTCCCBCSSCSSEECSTTCEEEEEEESSHHHHHHHHHHCEEEE--EEC-CCCCSHHHHHSTTCCCSSTTCTTSEEEE
T ss_pred CCCCCCCCcccccCCEEEEcCCeEEEEEECCHHHHHHHhCCCeEEE--eeC-CCCCCHHHHhccCCceeccCCCCccccc
Confidence 2211145789999999999999999999999999999999999999 899 999999999999874 431 24652
Q ss_pred -ccccCChhhhcccCCeEEEEEEEEecccccCCccCCceEEEECC-CCcEEEEeCCCChHHHHHHHHHHhCCCCCcEEEE
Q 002311 308 -PKSVGDISKGMNEADHKILSAEVKLGSQYYFYMETQTALAVPDE-DNCLVVYSSIQCPEYAHATIARCLGIPEHNVRVI 385 (937)
Q Consensus 308 -~~~~Gd~e~af~~A~~vvve~~~~~~~~~h~~mEp~~avA~~~~-dg~l~V~~stQ~p~~~r~~lA~~Lglp~~kVrV~ 385 (937)
...+||++++|++|+++ ||++|++++|+|+||||++|+|+|++ +|+|+||+|||+|+.+|..||++||||++||||+
T Consensus 159 ~~~~~Gd~~~a~a~A~~v-ve~~y~~~~~~h~~mEp~~~~A~~~~~~g~l~v~~stQ~p~~~r~~~A~~Lglp~~~VrV~ 237 (769)
T 1rm6_A 159 VHAEFGDVAAAFAEADLI-REKTYTFAEVNHVHMELNATLAEYDPVRDMLTLNTTTQVPYYVHLKVAACLQMDSARIRVI 237 (769)
T ss_dssp EEEEESCHHHHHHTCSEE-EEEEEEECCBCCCCSSCCEEEEEEETTTTEEEEEECCSCHHHHHHHHHHHHTCCGGGEEEE
T ss_pred cccccCChhhhhccCCEE-EEEEEEECCccccCCCCceEEEEEeCCCCeEEEEECCcCHHHHHHHHHHHhCCCHHHEEEE
Confidence 34789999999999996 99999999999999999999999987 6899999999999999999999999999999999
Q ss_pred eccCCCCCCCCCcccchHHHHHHHHHHhCCCCEEEEcChhhhhhhcCCCCceEEEEEEEECCCCcEEEEEEEEEeeCCCC
Q 002311 386 TRRVGGGFGGKAIKAMPVATACALAAYKLCRPVRIYVNRKTDMVMAGGRHPMKIEYNVGFKSNGKITALQLNILIDAGQY 465 (937)
Q Consensus 386 ~~~vGGgFG~K~~~~~~~~~~aAlaA~~~gRPVk~~~~R~E~~~~~~~R~~~~~~~k~g~d~dG~i~A~~~~~~~d~Gay 465 (937)
++++|||||+|..... .++.+|++|+++||||||+|||+|+|+++++||++.+++|+|+|+||+|+|++++++.|+|+|
T Consensus 238 ~~~vGGgFG~K~~~~~-~~~~aA~~A~~~grPVk~~~tR~e~~~~~~~R~~~~~~~~~g~d~dG~i~a~~~~~~~d~Gay 316 (769)
T 1rm6_A 238 KPFLGGGFGARTEALH-FEIIAGLLARKAKGTVRLLQTREETFIAHRGRPWTEVKMKIGLKKDGKIAALALEATQAGGAY 316 (769)
T ss_dssp CCBCCCCTTTTSSCCH-HHHHHHHHHHHHTSEEEEECCHHHHHHHCCCBCEEEEEEEEEECTTSCEEEEEEEEEEECCSS
T ss_pred eCCCCCCCCCcccccc-HHHHHHHHHHHhCCCEEEEecHHHHhhhcCCCCCEEEEEEEEECCCCeEEEEEEEEEEeCCcC
Confidence 9999999999986431 477888999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCC-chhhhhhccCCCCccccEEEEEEEeecCCCCCCccCCCChhHHHHHHHHHHHHHHHHcCCCHHHHHHhhcCCCC
Q 002311 466 PDVSP-NIPAYMIGALKKYDWGALHFDIKVCRTNLPSRTAMRAPGEVQGSFIAEAVIEHVASTLSMEVDFVRSINLHTHN 544 (937)
Q Consensus 466 ~~~~~-~~~~~~~~~~~~Y~ipn~~~~~~~v~TN~~p~ga~RG~G~pq~~fa~E~~mD~lA~~lG~DP~e~R~kNl~~~~ 544 (937)
.+++. ++.....++.++|+|||++++++.|+||++|+|+|||||.||++|++|++||++|++|||||+|||+||+++++
T Consensus 317 ~~~~~~v~~~~~~~~~~~Y~ipn~~~~~~~v~TN~~~~ga~Rg~G~~q~~fa~E~~mDelA~~lg~DP~e~R~~N~~~~~ 396 (769)
T 1rm6_A 317 AGYGIITILYTGALMHGLYHIPAIKHDAWRVYTNTPPCGAMRGHGTVDTRAAFEALLTEMGEELGIDSLKIRQINMLPQI 396 (769)
T ss_dssp CTTHHHHHHHHHHTTSSSBCCSCEEEEEEEECCSSSCCCCCSSTTTHHHHHHHHHHHHHHHHHHTCCHHHHHHHTBCSSS
T ss_pred cccchHHHHHHHHhcCCCcCCCcEEEEEEEEECCCCCCccccCCChHHHHHHHHHHHHHHHHHHCcCHHHHHHHhCCCCC
Confidence 88765 33444466789999999999999999999999999999999999999999999999999999999999999877
Q ss_pred CccccccCCCCccccC-CHHHHHHHHHHhcCChhhHHHHHHHhhccCCcceeeeecceEeecCCC---------CCceEE
Q 002311 545 SLNLFYESSAGELEEY-TIPLIWDRLAVSSSFNQRTEVIKEFNRSNLWRKKGISRVPIVYDVPLM---------STPGKV 614 (937)
Q Consensus 545 ~~~~~~~~~~g~~~~~-~~~~~l~~~~~~~~~~~r~~~~~~~~~~~~~~~~Gig~a~~~~~~g~~---------~~~a~v 614 (937)
+. | +++|+.+++ ++++||++++++++|.+++++. .+| ||+|+++..++++++ .++++|
T Consensus 397 ~~--~--~~~g~~~~s~~~~~~l~~~~~~~~w~~r~~~~------~~g--rG~Gia~~~~~~g~~~~~~~~~~~~~~a~v 464 (769)
T 1rm6_A 397 PY--V--TMYAQRVMSYGVPECLEKVKAASGWEERKGKL------PKG--RGLGIALSHFVSGTSTPKHWTGEPHATVNL 464 (769)
T ss_dssp SE--E--CTTCCEECCCCHHHHHHHHHHHHTHHHHTTCS------CTT--EEEEEEEEEEESSCSSCSSCCCCCSEEEEE
T ss_pred CC--c--CCCCccccCCCHHHHHHHHHHhCCchhhhhhh------ccC--ceEEEEEEEEecccCccccccCCCCccEEE
Confidence 53 2 566888776 8999999999999997654321 123 899999888888643 378999
Q ss_pred EEccCCcEEEEeccccccccHHHHHHHHHHHHhcccccCCCCCCCCcEEEecCCCccccCCCCCcccchhhhhHHHHHHH
Q 002311 615 SILSDGSVVVEVGGIELGQGLWTKVKQMAAFALSSIQCGGMGDLLETVRVIQADTLSVIQGGLTAGSTKSEASCQAVRNC 694 (937)
Q Consensus 615 ~l~~DG~v~v~~g~~e~GqG~~T~~aqiaAe~Lgi~~~~~~~~~~~~I~v~~~dT~~~p~~~~t~aSr~t~~~g~Av~~A 694 (937)
+|++||+|+|++|++|||||++|+++|||||+||| |+|+|+|..+||+.+|++++|+|||+|+++|+||++|
T Consensus 465 ~l~~dG~v~v~~g~~e~GqG~~T~~aQiaAe~Lgi--------p~e~V~v~~~DT~~~p~~~~t~aSr~t~~~G~Av~~A 536 (769)
T 1rm6_A 465 KLDFDGGITLLTGAADIGQGSNTMASQVAAEVLGV--------RLSRIRVISADSALTPKDNGSYSSRVTFMVGNASISA 536 (769)
T ss_dssp EECTTCCEEEEECCCCSSSCHHHHHHHHHHHHHTC--------CGGGEEEEESBTTTSCCCCCSCTTCHHHHHHHHHHHH
T ss_pred EEeCCCeEEEEECCccCCCCHHHHHHHHHHHHhCC--------CHHHEEEecCCCCCCCCCCCCccchHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999 9999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhc------------------cCccCHHHHHHHHHhcCceeEEEEEecC------CC-------C
Q 002311 695 CKILVERLTPLRERLQAQ------------------MGSVKWETLIQQAYLQSVSLSASSLYLP------DF-------T 743 (937)
Q Consensus 695 a~~l~~~l~~~aa~~~~~------------------~~~~~~~~~~~~~~~~~~~l~~~~~~~~------~~-------~ 743 (937)
|++||+||+++++++++. +..++|.+++..++..+..+...+.|.. .+ .
T Consensus 537 a~~l~~~l~~~aa~~l~~~~~~l~~~~g~v~~~~~~~~~~~~~el~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~ 616 (769)
T 1rm6_A 537 AEELKGVLVKAAAKKLDAREEDIEVIDEMFMVSGSQDPGLSFQEVVKAAMVDSGTITVKGTYTCPTEFQGDKKIRGSAIG 616 (769)
T ss_dssp HHHHHHHHHHHHHHHTTCCGGGEEEETTEEEETTCSSCCEEHHHHHHHHHTTTCSEEEEEEECCCGGGSCCTTCGGGGTT
T ss_pred HHHHHHHHHHHHHHHhCCCHHHeEEeCCEEEEccCCCCccCHHHHHHhhhhcccccccccceeccccccccccccccccC
Confidence 999999999999988752 1247899999877655455665555542 11 2
Q ss_pred ccccccEEEEEEEEEEECCCCcEEEEEEEEEecCCccCCccccchhhhchhHHHHHHHhccCceecCCCccccCCCCCCC
Q 002311 744 SMKYLNYGAAVSEVEINLLTGETTIVQSDIIYDCGQSLNPAVDLGQIEGSFVQGIGFFMLEEYPTNSDGLVVSEGTWTYK 823 (937)
Q Consensus 744 ~~~~~~~ga~~aeVeVD~~TG~v~V~r~~~v~D~G~vINP~~v~gQi~Ggi~qGiG~AL~Ee~~~d~~G~~l~~~~~dY~ 823 (937)
++.+|+|+||++|||||++||+++|+|+++++|||++|||++++||||||++||||+||+||+.||+ |+++|+||+||+
T Consensus 617 ~~~~~~~ga~~aeVeVD~~TG~v~V~r~~~v~D~G~~iNP~~~~gQieGG~~qGiG~aL~Ee~~~d~-G~~~~~~~~dY~ 695 (769)
T 1rm6_A 617 ATMGFCYAAQVVEASVDEITGKVTAHKVWVAVDVGKALNPLAVEGQTQGGVWMGMGQALSEETVYDN-GRMVHGNILDYR 695 (769)
T ss_dssp CCSCEEEEEEEEEEEECTTTCCEEEEEEEEEEECSSCSSHHHHHHHHHHHHHHHHHHHHTCCCCEET-TEESCCSTTTSC
T ss_pred CCCCcceEEEEEEEEEECCCceEEEEEEEEEEECCccCCHHHHHHHHHhHHHHHHHHHhcceeEecC-CEeCCCChhhcc
Confidence 3456799999999999999999999999999999999999999999999999999999999999997 999999999999
Q ss_pred CCCCCCCCCeeEEEEecCCCCCCCCCCccccCCCCccchhhHHHHHHHHHHHHHHhhhcccccCCCCcccccCCCCCHHH
Q 002311 824 IPTLDTIPKQFNVEILNSGHHKKRVLSSKASGEPPLLLAVSVHCATRAAIREARKQLLSWSQLDQSDLTFDLEVPATVQV 903 (937)
Q Consensus 824 iP~~~diP~~i~v~~~e~~~~p~gp~GaKGvGE~~~~~~~av~~Ai~nAi~~A~~~~~~~~~~~g~~~~~~~~lP~Tpe~ 903 (937)
||++.|+|+ |++++++++ +|.+|||+||+||+++++ +++||+|||++|+| +++++||+|||+
T Consensus 696 ip~~~D~P~-i~v~~ve~~-~~~~p~GaKGvGE~~~~~---~~~AIaNAv~~A~G-------------~r~~~lP~tpe~ 757 (769)
T 1rm6_A 696 VPTIVESPD-IEVIIVESM-DPNGPFGAKEASEGMLAG---FLPAIHEAVYEAVG-------------VRATDFPLSPDR 757 (769)
T ss_dssp CCCTTTCCE-EEEEEECCC-CTTSGGGCCCCSSTTTTT---HHHHHHHHHHHHHS-------------CCCCEESCCHHH
T ss_pred CCCcccCCC-EEEEEEeCC-CCCCCCCCccccccchhh---HHHHHHHHHHHHhC-------------CCcccCCCCHHH
Confidence 999999995 999999985 567999999999999997 77899999999995 678999999999
Q ss_pred HHHhcCC
Q 002311 904 VKELCGP 910 (937)
Q Consensus 904 v~~a~~~ 910 (937)
||++|+.
T Consensus 758 v~~al~~ 764 (769)
T 1rm6_A 758 ITELLDA 764 (769)
T ss_dssp HHHHHHH
T ss_pred HHHHHhh
Confidence 9999853
No 8
>1ffv_B CUTL, molybdoprotein of carbon monoxide dehydrogenase; hydrolase; HET: ARO PCD FAD; 2.25A {Hydrogenophaga pseudoflava} SCOP: d.41.1.1 d.133.1.1 PDB: 1ffu_B*
Probab=100.00 E-value=1.4e-159 Score=1463.52 Aligned_cols=718 Identities=21% Similarity=0.253 Sum_probs=646.1
Q ss_pred CCCCCCCccCCcccccccccccccccCCCCCCcEEEEEEecCCCCeEEEEEecCCcC-CCCEEEEEeccCCCccCCCccC
Q 002311 156 YFPVGEPIPKSGAALQASGEAIFVDDIPSPINCLYGAFVYSTKPLVRIRSVEIKSKS-LPGVSAFLSYKDIPEAGQNIGS 234 (937)
Q Consensus 156 ~~~vG~~~~R~d~~~kvtG~a~Y~~Di~~~pgmL~a~~vrSp~ahArI~sID~s~A~-~pGVvaV~T~~Dip~~g~~~~~ 234 (937)
++.||++++|+|+.+||||+++|++|+. +|||||++++|||++||||+|||+|+|+ +|||++|+|++|+|. .+.+.
T Consensus 15 ~~~iG~~~~R~d~~~kvtG~a~Y~~D~~-~pgmL~a~~vrSp~aharI~sID~s~A~~~PGV~~V~t~~D~p~--~~~~~ 91 (803)
T 1ffv_B 15 LAGMGASRLRKEDARFIQGKGNYVDDIK-MPGMLHMDIVRAPIAHGRIKKIHKDAALAMPGVHAVLTAEDLKP--LKLHW 91 (803)
T ss_dssp HTCTTCCCCCSSHHHHTTTCCCCGGGCC-CTTCEEEEEEECSSSSEEEEEEECHHHHHSTTEEEEECHHHHGG--GTCSE
T ss_pred hccCCCCCcCcChHhhcccceecccccC-CCCCEEEEEEeCCCCCeEEEEeehHHHhcCCCeEEEEehhhccC--ccccc
Confidence 3569999999999999999999999996 7999999999999999999999999999 999999999999983 22211
Q ss_pred CC--CCCCcccCCCCceeecCCcEEEEEeCCHHHHHHhcccceEEEccCCCCCCcCCHHHHhcCCC--Cccc-CC-----
Q 002311 235 RT--KFGPEPLFADELTHCAGQPIAFVVADTQKIANRAADLAVVDYDVGNLEPPILSVEEAVGRSS--FFEV-PS----- 304 (937)
Q Consensus 235 ~~--~~~~~p~la~~~Vry~G~pVA~VvAet~~~A~~Aa~lI~Vey~~e~L~p~v~d~~~Al~~~a--~~~~-~~----- 304 (937)
.. ...++|+|++++|||+|||||+|||+|+++|++|+++|+||| |+| |+++|+++|+++++ +|+. +.
T Consensus 92 ~~~~~~~~~~~la~~~Vry~Gq~VA~VvA~t~~~A~~Aa~~v~Vey--e~l-p~v~~~~~Al~~~a~~i~~~~~~~~~~~ 168 (803)
T 1ffv_B 92 MPTLAGDVAAVLADEKVHFQMQEVAIVIADDRYIAADAVEAVKVEY--DEL-PVVIDPIDALKPDAPVLREDLAGKTSGA 168 (803)
T ss_dssp EECTTSCEEESSCCSEECSTTCEEEEEEESSHHHHHHHHHHCEEEE--EEC-CCCCCHHHHTSTTCCCSCGGGTTCCEET
T ss_pred ccccCCCccccccCceEEEcCCcEEEEEECCHHHHHHHhcCCEEEE--eeC-CccCCHHHHhhcCCceeccccccccccc
Confidence 10 113568999999999999999999999999999999999999 899 99999999999987 3432 12
Q ss_pred -------ccc---cccc-CChhhhcccCCeEEEEEEEEecccccCCccCCceEEEECC-CCcEEEEeCCCChHHHHHHHH
Q 002311 305 -------FLY---PKSV-GDISKGMNEADHKILSAEVKLGSQYYFYMETQTALAVPDE-DNCLVVYSSIQCPEYAHATIA 372 (937)
Q Consensus 305 -------~~~---~~~~-Gd~e~af~~A~~vvve~~~~~~~~~h~~mEp~~avA~~~~-dg~l~V~~stQ~p~~~r~~lA 372 (937)
|+. ...+ ||++++|++|+++ ||++|++++|+|+||||++|+|+|++ +|+|+||+|||+|+.+|..||
T Consensus 169 ~~~~~~~n~~~~~~~~~~Gd~~~afa~A~~v-ve~~y~~~~~~h~~mEp~~~~A~~~~~~g~l~v~~stQ~p~~~r~~lA 247 (803)
T 1ffv_B 169 HGPREHHNHIFTWGAGDKAATDAVFANAPVT-VSQHMYYPRVHPCPLETCGCVASFDPIKGDLTTYITSQAPHVVRTVVS 247 (803)
T ss_dssp TEECSSTTEEEEEEEECHHHHHHHHHHCSEE-EEEEEEECCBCCCCSSCCEEEEEEETTTTEEEEEECCSCHHHHHHHHH
T ss_pred ccccccccccccccccccCChhhhhccCCEE-EEEEEEECCEeccCCCCceEEEEEeCCCceEEEEECCCCHHHHHHHHH
Confidence 542 2467 9999999999996 99999999999999999999999985 689999999999999999999
Q ss_pred HHhCCCCCcEEEEeccCCCCCCCCCcccchHHHHHHHHHHhCCCCEEEEcChhhhhhhcCCCCceEEEEEEEECCCCcEE
Q 002311 373 RCLGIPEHNVRVITRRVGGGFGGKAIKAMPVATACALAAYKLCRPVRIYVNRKTDMVMAGGRHPMKIEYNVGFKSNGKIT 452 (937)
Q Consensus 373 ~~Lglp~~kVrV~~~~vGGgFG~K~~~~~~~~~~aAlaA~~~gRPVk~~~~R~E~~~~~~~R~~~~~~~k~g~d~dG~i~ 452 (937)
++||||++||||+++++|||||+|... +..++++|++|+++||||||+|||+|+|+++++||++.+++|+|+|+||+|+
T Consensus 248 ~~Lglp~~~VrV~~~~vGGgFG~K~~~-~~~~~~aa~~A~~~grPVkl~~tR~e~~~~~~~R~~~~~~~~~g~d~dG~i~ 326 (803)
T 1ffv_B 248 MLSGIPESKVRIVSPDIGGGFGNKVGI-YPGYVCAIVASIVLGRPVKWVEDRVENISTTAFARDYHMDGELAATPDGKIL 326 (803)
T ss_dssp HHHCCCGGGEEEECCCCSCCTTTTSSC-CHHHHHHHHHHHHHTSCEEEECCHHHHHHHSCEECCEEEEEEEEECTTCCEE
T ss_pred HHhCCCHHHEEEEeCCCCCCCCccccc-cHHHHHHHHHHHHhCCCEEEEechHHHhhhcCCCCCeEEEEEEEECCCCCEE
Confidence 999999999999999999999999863 4546788999999999999999999999999999999999999999999999
Q ss_pred EEEEEEEeeCCCCCC-CCCchhh-hhh-ccCCCCccccEEEEEEEeecCCCCCC-ccCCCCh-hHHHHHHHHHHHHHHHH
Q 002311 453 ALQLNILIDAGQYPD-VSPNIPA-YMI-GALKKYDWGALHFDIKVCRTNLPSRT-AMRAPGE-VQGSFIAEAVIEHVAST 527 (937)
Q Consensus 453 A~~~~~~~d~Gay~~-~~~~~~~-~~~-~~~~~Y~ipn~~~~~~~v~TN~~p~g-a~RG~G~-pq~~fa~E~~mD~lA~~ 527 (937)
|++++++.|+|+|.+ ++..+.. ... ...++|+|||++++++.|+||++|+| ||||||. ||++|++|++||++|++
T Consensus 327 a~~~~~~~d~Gay~~~~~~~v~~~~~~~~~~~~Y~ipn~~~~~~~v~TN~~p~g~a~Rg~G~~~q~~fa~E~~mDelA~~ 406 (803)
T 1ffv_B 327 GLRVNVVADHGAFDACADPTKFPAGLFHICSGSYDIPRAHCSVKGVYTNKAPGGVAYXXSFRVTEAVYLIERMVDVLAQK 406 (803)
T ss_dssp EEEEEEEEECCSSCCCCCCTTCTTTTGGGTTTTBCCSEEEEEEEEECCSSCCEESCSSCTTTHHHHHHHHHHHHHHHHHH
T ss_pred EEEEEEEecCCcccccccchhHHHHHHhhcCCCccCCcEEEEEEEEEcCCCCCccceeccCCCchhHHHHHHHHHHHHHH
Confidence 999999999999965 6663322 223 34789999999999999999999999 9999999 99999999999999999
Q ss_pred cCCCHHHHHHhhcCCCCCccccccCCCCccccC-CHHHHHHHHHHhcCChhhHHHHHHHhhccC-CcceeeeecceEeec
Q 002311 528 LSMEVDFVRSINLHTHNSLNLFYESSAGELEEY-TIPLIWDRLAVSSSFNQRTEVIKEFNRSNL-WRKKGISRVPIVYDV 605 (937)
Q Consensus 528 lG~DP~e~R~kNl~~~~~~~~~~~~~~g~~~~~-~~~~~l~~~~~~~~~~~r~~~~~~~~~~~~-~~~~Gig~a~~~~~~ 605 (937)
|||||+|||+||++++++ +||.+++|+.+++ ++++||++++++++|.+++++..++++.++ |++||+|++++.+++
T Consensus 407 lG~DP~e~R~~N~~~~~~--~p~~~~~g~~~~~~~~~~~l~~~~~~~~w~~~~~~~~~~~~~g~~~~~rGiG~a~~~~~~ 484 (803)
T 1ffv_B 407 LNMDKAEIRAKNFIRKEQ--FPYTTQFGFEYDSGDYHTALKKVLDAVDYPALRAEQAARRADPNSPTLMGIGLVTFTEVV 484 (803)
T ss_dssp HTCCTTHHHHHHBCCGGG--CSEECTTSCEECCCCHHHHHHHHHHHHTHHHHHHHHHHHHHCTTCSEEEEEEEEEEECCB
T ss_pred HCcCHHHHHHHhCCCCCc--CccccCCCcccCCccHHHHHHHHHHHCCchhHHHHhHhhhccCCCcceEEEEEEEEEEec
Confidence 999999999999998764 4677888988876 899999999999999987777777777777 578999999999888
Q ss_pred CCC------------CCceEEEEccCCcEEEEeccccccccHHHHHHHHHHHHhcccccCCCCCCCCcEEEecCCCcccc
Q 002311 606 PLM------------STPGKVSILSDGSVVVEVGGIELGQGLWTKVKQMAAFALSSIQCGGMGDLLETVRVIQADTLSVI 673 (937)
Q Consensus 606 g~~------------~~~a~v~l~~DG~v~v~~g~~e~GqG~~T~~aqiaAe~Lgi~~~~~~~~~~~~I~v~~~dT~~~p 673 (937)
+++ .++++|+|++||+|+|++|++|||||++|+++|||||+||| |+|+|+|..+||+.+|
T Consensus 485 g~~~~~~~~~~~~~~~~~a~v~l~~dG~v~v~~g~~e~GqG~~T~~aQiaAe~LGi--------~~e~V~v~~~DT~~~p 556 (803)
T 1ffv_B 485 GAGPSKMCDILGVGMFDSCEIRIHPTGSAIARMGTITQGQGHQTTYAQIIATELGI--------PSEVIQVEEGDTSTAP 556 (803)
T ss_dssp CCCCTTTCEETTEESCEEEEEEECTTSCEEEEESCCCSSSCHHHHHHHHHHHHHTC--------CGGGEEEECCBTTTSC
T ss_pred cccccccccccccCCcccEEEEEecCCeEEEEECCcCCCCCHHHHHHHHHHHHHCC--------CHHHEEEecCCCCCCC
Confidence 754 37899999999999999999999999999999999999999 9999999999999999
Q ss_pred CCCCCcccchhhhhHHHHHHHHHHHHHHHHHHHHHHHhc------------------cCccCHHHHHHHHHhc---C--c
Q 002311 674 QGGLTAGSTKSEASCQAVRNCCKILVERLTPLRERLQAQ------------------MGSVKWETLIQQAYLQ---S--V 730 (937)
Q Consensus 674 ~~~~t~aSr~t~~~g~Av~~Aa~~l~~~l~~~aa~~~~~------------------~~~~~~~~~~~~~~~~---~--~ 730 (937)
++++|+|||+|+++|+||++||++||+||+++++++++. +..++|.+++..++.. + .
T Consensus 557 ~~~~t~aSr~t~~~G~Av~~Aa~~l~~~l~~~aa~~l~~~~~~l~~~~g~v~~~~~~~~~~~~~el~~~a~~~~~~~~~~ 636 (803)
T 1ffv_B 557 YGLGTYGSRSTPVAGAAIALAARKIHAKARKIAAHMLEVNENDLDWEVDRFKVKGDDSKFKTMADIAWQAYHQPPAGLEP 636 (803)
T ss_dssp CCCCSCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCGGGEEECSSEEEESSCTTCEEEHHHHHHHHHHCCCTTCCS
T ss_pred CCCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHEEEeCCEEEEcCCCCCccCHHHHHHHHHhccCccccc
Confidence 999999999999999999999999999999999988652 1247899999776422 1 1
Q ss_pred eeEEEEEecCCCCccccccEEEEEEEEEEECCCCcEEEEEEEEEecCCccCCccccchhhhchhHHHHHHHhccCceecC
Q 002311 731 SLSASSLYLPDFTSMKYLNYGAAVSEVEINLLTGETTIVQSDIIYDCGQSLNPAVDLGQIEGSFVQGIGFFMLEEYPTNS 810 (937)
Q Consensus 731 ~l~~~~~~~~~~~~~~~~~~ga~~aeVeVD~~TG~v~V~r~~~v~D~G~vINP~~v~gQi~Ggi~qGiG~AL~Ee~~~d~ 810 (937)
+|.++++|.++ ..+|+||+|++|||||++||+++|+|+++++|||++|||++++||||||++||||+||+||+.||+
T Consensus 637 gl~~~~~~~~~---~~~~~~ga~~aeVeVD~~TG~v~V~r~~~v~D~G~~iNP~~~~gQieGG~~qGiG~aL~Ee~~~d~ 713 (803)
T 1ffv_B 637 GLEAVHYYDPP---NFTYPFGIYLCVVDIDRATGETKVRRFYALDDCGTRINPMIIEGQIHGGLTEGYAVAMGQQMPFDA 713 (803)
T ss_dssp SEEEEEEECCS---SCBCCEEEEEEEEEEETTTCCEEEEEEEEEEECBSCSCHHHHHHHHHHHHHHHHHHHHTCCCCBCT
T ss_pred ceeeeeeecCC---CCCcceeEEEEEEEEEcCCCeEEEEEEEEEEECCccCCHHHHHHHHHHHHHHHHHHHHhCceEECC
Confidence 46777777553 235799999999999999999999999999999999999999999999999999999999999998
Q ss_pred CCccccCCCCCCCCCCCCCCCCeeEEEEecCCCCCCCCCCccccCCCCccchhhHHHHHHHHHHHHHHhhhcccccCCCC
Q 002311 811 DGLVVSEGTWTYKIPTLDTIPKQFNVEILNSGHHKKRVLSSKASGEPPLLLAVSVHCATRAAIREARKQLLSWSQLDQSD 890 (937)
Q Consensus 811 ~G~~l~~~~~dY~iP~~~diP~~i~v~~~e~~~~p~gp~GaKGvGE~~~~~~~av~~Ai~nAi~~A~~~~~~~~~~~g~~ 890 (937)
+|+++|+||+||+||++.|+|+ |++++++++ +|.+|||+||+||+++++ +++||+|||++|+.++ |
T Consensus 714 ~G~~~~~~~~dY~ip~~~D~P~-i~v~~~e~p-~~~~p~GaKGvGE~~~~~---~apAiaNAI~~A~~~~-------G-- 779 (803)
T 1ffv_B 714 QGNLLGNTLMDYFLPTAVETPH-WETDHTVTP-SPHHPIGAKGVAESPHVG---SIPTFTAAVVDAFAHV-------G-- 779 (803)
T ss_dssp TCCBCSCSTTTSCCCCTTTSCC-CEEEECCCC-CTTSTTCBCCCTTHHHHH---HHHHHHHHHHHHHGGG-------T--
T ss_pred CCCCCCCCHhhccCCCcccCCC-eEEEEEeCC-CCCCCCCCccccCCccch---HHHHHHHHHHHHHHcc-------C--
Confidence 9999999999999999999995 999999975 678999999999999987 6779999999999543 3
Q ss_pred cccccCCCCCHHHHHHhcC
Q 002311 891 LTFDLEVPATVQVVKELCG 909 (937)
Q Consensus 891 ~~~~~~lP~Tpe~v~~a~~ 909 (937)
++++++|+|||+||++|+
T Consensus 780 -~r~~~lP~tpe~v~~al~ 797 (803)
T 1ffv_B 780 -VTHLDMPHTSYRVWKSLK 797 (803)
T ss_dssp -CCCCCSCCCHHHHHHHHH
T ss_pred -CccccCCCCHHHHHHHhh
Confidence 789999999999999885
No 9
>1t3q_B Quinoline 2-oxidoreductase large subunit; QOR, molybdenum, MCD; HET: FAD MCN; 1.80A {Pseudomonas putida} SCOP: d.41.1.1 d.133.1.1
Probab=100.00 E-value=5.4e-159 Score=1457.41 Aligned_cols=715 Identities=23% Similarity=0.272 Sum_probs=635.2
Q ss_pred CCCCCccCCcccccccccccccccCCCCCCcEEEEEEecCCCCeEEEEEecCCcC-CCCEEEEEeccCCCccCCC--ccC
Q 002311 158 PVGEPIPKSGAALQASGEAIFVDDIPSPINCLYGAFVYSTKPLVRIRSVEIKSKS-LPGVSAFLSYKDIPEAGQN--IGS 234 (937)
Q Consensus 158 ~vG~~~~R~d~~~kvtG~a~Y~~Di~~~pgmL~a~~vrSp~ahArI~sID~s~A~-~pGVvaV~T~~Dip~~g~~--~~~ 234 (937)
.||++++|+|+.+||||+++|++|+. +|||||++++|||++||||+|||+|+|+ +|||++|+|++|+| +.| .+.
T Consensus 13 ~iG~~~~R~d~~~kvtG~a~Y~~D~~-~pgmL~a~~vrSp~aharI~sID~s~A~~~pGV~~V~t~~D~p--~~~~~~~~ 89 (788)
T 1t3q_B 13 SIGTSVLRREDTRLLTGRGRYIADLV-LSGMLHVASLRSPFAHARIVSIDVADAQALPGVELVWCGADVA--ELSQGIVA 89 (788)
T ss_dssp STTSCCCCTTHHHHHTTCCCBGGGCC-CTTCEEEEEEECSSSSEEEEEEECHHHHHSTTEEEEEEHHHHH--TTCCCEEE
T ss_pred cCCCCCcCcchHHhCccceecccccC-CCCCEEEEEEecCCCCEEEEEeEhHHHhhCCCeEEEEeHHHCc--ccccccCc
Confidence 69999999999999999999999995 7999999999999999999999999999 99999999999998 332 111
Q ss_pred CCC-----CCCcccCCCCceeecCCcEEEEEeCCHHHHHHhcccceEEEccCCCCCCcCCHHHHhcCCC-Cccc-CCccc
Q 002311 235 RTK-----FGPEPLFADELTHCAGQPIAFVVADTQKIANRAADLAVVDYDVGNLEPPILSVEEAVGRSS-FFEV-PSFLY 307 (937)
Q Consensus 235 ~~~-----~~~~p~la~~~Vry~G~pVA~VvAet~~~A~~Aa~lI~Vey~~e~L~p~v~d~~~Al~~~a-~~~~-~~~~~ 307 (937)
... ..+.|+|++++|||+|||||+|||+|+++|++|+++|+|+| |+| |+++|+++|+++++ +|+. ++|+.
T Consensus 90 ~~~~~~~~~~~~~~la~~~Vry~Gq~VA~VvA~t~~~A~~Aa~~v~Vey--e~l-p~v~~~~~Al~~~a~i~~~~~~n~~ 166 (788)
T 1t3q_B 90 TMQVEGFQTTIQPLLANGVTRFVGEIVAVVVASSRAIAEDAAQLIQVEY--EEL-PAVTGIEAALEGEARANDTLAGNVV 166 (788)
T ss_dssp CCSSTTCCCEEECSSCCSEECSTTCEEEEEEESSHHHHHHHHTTCEEEE--EEC-CCCCSHHHHHHCSCCSCTTSSSSEE
T ss_pred ccccccccCCccccccCCeEEEcCCeEEEEEECCHHHHHHHhCCCeEEE--eeC-CCcCCHHHHhhccCcccCCCCCccc
Confidence 001 11347799999999999999999999999999999999999 899 99999999999886 3432 34652
Q ss_pred ---ccccCChhhhcccCCeEEEEEEEEecccccCCccCCceEEEECC-CCcEEEEeCCCChHHHHHHHHHHhCCCCCcEE
Q 002311 308 ---PKSVGDISKGMNEADHKILSAEVKLGSQYYFYMETQTALAVPDE-DNCLVVYSSIQCPEYAHATIARCLGIPEHNVR 383 (937)
Q Consensus 308 ---~~~~Gd~e~af~~A~~vvve~~~~~~~~~h~~mEp~~avA~~~~-dg~l~V~~stQ~p~~~r~~lA~~Lglp~~kVr 383 (937)
....||++++|++|+++ ||++|++++|+|+||||++|+|+|++ +|+|+||+|||+|+.+|..||++||||++|||
T Consensus 167 ~~~~~~~Gd~~~afa~A~~v-ve~~y~~~~~~h~~mEp~~~~A~~~~~~g~l~v~~stQ~p~~~r~~lA~~Lglp~~~Vr 245 (788)
T 1t3q_B 167 SRTSRARDELAPIFASSAGV-VRGQFSCGRVSACPMETRGAVAQYEWTTQQLILWTATQMPSFVRTMVAMFCAIPEHLIE 245 (788)
T ss_dssp EEEEEEECCCHHHHHHSSEE-EEEEEEECBBCCCCSSCCEEEEEEETTTTEEEEEECCSCHHHHHHHHHHHHTCCGGGEE
T ss_pred cccccccCChhhhhccCCcE-EEEEEEECCEeccCCCCceEEEEEECCCCEEEEEECCCCHHHHHHHHHHHHCCChHHEE
Confidence 34789999999999986 99999999999999999999999986 68999999999999999999999999999999
Q ss_pred EEeccCCCCCCCCCcccchHHHHHHHHHHhCCCCEEEEcChhhhhhhcCCCCceEEEEEEEECCCCcEEEEEEEEEeeCC
Q 002311 384 VITRRVGGGFGGKAIKAMPVATACALAAYKLCRPVRIYVNRKTDMVMAGGRHPMKIEYNVGFKSNGKITALQLNILIDAG 463 (937)
Q Consensus 384 V~~~~vGGgFG~K~~~~~~~~~~aAlaA~~~gRPVk~~~~R~E~~~~~~~R~~~~~~~k~g~d~dG~i~A~~~~~~~d~G 463 (937)
|+++++|||||+|... +.+++.+|++|+++||||||+|||+|+|+++++||++.+++|+|+|+||+|+|++++++.|+|
T Consensus 246 V~~~~vGGgFG~K~~~-~~~~~~aA~~A~~~grPVk~~~tR~e~~~~~~~R~~~~~~~~~g~d~dG~i~a~~~~~~~d~G 324 (788)
T 1t3q_B 246 VRVPDVGGGFGQKAHL-HPEELLVCLLSRALGRPVRWIEDRQENFLGATHAKQQRNEMGLAFDGDGRFLALENRSITDGG 324 (788)
T ss_dssp EECCBCSCCTTTTSSC-CHHHHHHHHHHHHHTSCEEEECCHHHHHHHSCBBCCEEEEEEEEECTTCCEEEEEEEEEEECC
T ss_pred EEeCCCCCCCCCCCcc-chHHHHHHHHHHHhCCCEEEEecHHHHhhhcCCCCCeEEEEEEEECCCCcEEEEEEEEEEcCC
Confidence 9999999999999874 344788899999999999999999999999999999999999999999999999999999999
Q ss_pred CCCC--CCCch-h-hhhhccCCCCccccEEEEEEEeecCCCCCCccCCCChhHHHHHHHHHHHHHHHHcCCCHHHHHHhh
Q 002311 464 QYPD--VSPNI-P-AYMIGALKKYDWGALHFDIKVCRTNLPSRTAMRAPGEVQGSFIAEAVIEHVASTLSMEVDFVRSIN 539 (937)
Q Consensus 464 ay~~--~~~~~-~-~~~~~~~~~Y~ipn~~~~~~~v~TN~~p~ga~RG~G~pq~~fa~E~~mD~lA~~lG~DP~e~R~kN 539 (937)
+|.+ ++..+ . ....++.++|+|||++++++.|+||++|+|+|||||.||++|++|++||++|++|||||+|||+||
T Consensus 325 ay~~~~~~~~v~~~~~~~~~~~~Y~ipn~~~~~~~v~Tn~~~~ga~Rg~G~~q~~fa~E~~mDelA~~lG~DP~e~R~~N 404 (788)
T 1t3q_B 325 AYNNLPWTQLVESHVGNAVILGVYKVPAVSEESIAVATNKCPIGAYRGVGFTAGQIARETLIDRAARQLGLSPFEIRRRN 404 (788)
T ss_dssp SSCCTTTCGGGTHHHHHHTTTTTBCCSEEEEEEEEECCSSSCBCCCTTTTHHHHHHHHHHHHHHHHHHHTCCHHHHHHTT
T ss_pred CCccccccchhHHHHHHHhcCCCcCCCcEEEEEEEEECCCCCCCcccCCcHHHHHHHHHHHHHHHHHHHCcCHHHHHHHh
Confidence 9987 66633 3 455667899999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCccccccCCCCccccC-CHHHHHHHHHHhcCChhhHHHHHHHhhccCCcceeeeecceEeecCCC----------
Q 002311 540 LHTHNSLNLFYESSAGELEEY-TIPLIWDRLAVSSSFNQRTEVIKEFNRSNLWRKKGISRVPIVYDVPLM---------- 608 (937)
Q Consensus 540 l~~~~~~~~~~~~~~g~~~~~-~~~~~l~~~~~~~~~~~r~~~~~~~~~~~~~~~~Gig~a~~~~~~g~~---------- 608 (937)
++++++ +||.+++|+.+++ ++++||++++++++|..++++..+.+.+++| ||+|+++..++++++
T Consensus 405 ~~~~~~--~p~~~~~g~~~~s~~~~~~l~~~~~~~~w~~~~~r~~~~~~~g~~--~G~GiA~~~~~~g~~~~~~~~~~~~ 480 (788)
T 1t3q_B 405 VVMPED--FPFTNRLGQTHREGTYLQTINLLEEMVNPEAFRQRQAEARARGKY--LGLGVSVFNEVTGTGTRTLSFLGTP 480 (788)
T ss_dssp BCCGGG--CSEECTTSCEECSCCHHHHHHHHHHHHCHHHHHHHHHHHHTTTEE--EEEEEEEEEEEESCCHHHHHHTTCC
T ss_pred cCCCCC--ccccCCCCcccCCCCHHHHHHHHHHhcCCchhhhhhhhhhccCCe--EEEEEEEEEeccccCcccccccccc
Confidence 998774 4778888998876 8999999999999998332222222233444 788888887777643
Q ss_pred ---CCceEEEEccCCcEEEEeccccccccHHHHHHHHHHHHhcccccCCCCCCCCcEEEecCCCccccCCCCCcccchhh
Q 002311 609 ---STPGKVSILSDGSVVVEVGGIELGQGLWTKVKQMAAFALSSIQCGGMGDLLETVRVIQADTLSVIQGGLTAGSTKSE 685 (937)
Q Consensus 609 ---~~~a~v~l~~DG~v~v~~g~~e~GqG~~T~~aqiaAe~Lgi~~~~~~~~~~~~I~v~~~dT~~~p~~~~t~aSr~t~ 685 (937)
.++++|+|++||+|+|++|++|||||++|+++|||||+||| |+|+|+|..+||+ +|++++|+|||+|+
T Consensus 481 ~~~~~~a~v~l~~dG~v~v~~g~~e~GqG~~T~~aQiaAe~LGi--------p~~~V~v~~~DT~-~p~~~~t~aSr~t~ 551 (788)
T 1t3q_B 481 TTTHDSATVRIDPTGKVTVTTSLASSGQGHETTLAQIAADVLGV--------PASDVVIQAGSTK-NTYGFGAYASRGAV 551 (788)
T ss_dssp CCCCBEEEEEECTTSCEEEEESCCCSSSCHHHHHHHHHHHHHTS--------CGGGEEEECSBTT-SCCBCCSCTTCHHH
T ss_pred cCccccEEEEEecCCeEEEEECCcCCCCCHHHHHHHHHHHHHCC--------CHHHEEEecCCCC-CCCCCCCccchHHH
Confidence 47899999999999999999999999999999999999999 9999999999999 99999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhc------------------cCccCHHHHHHHHHhcCc--------eeEEEEEec
Q 002311 686 ASCQAVRNCCKILVERLTPLRERLQAQ------------------MGSVKWETLIQQAYLQSV--------SLSASSLYL 739 (937)
Q Consensus 686 ~~g~Av~~Aa~~l~~~l~~~aa~~~~~------------------~~~~~~~~~~~~~~~~~~--------~l~~~~~~~ 739 (937)
++|+||++||++||+||+++++++++. +..++|.+++..++.... .+.....|.
T Consensus 552 ~~G~Av~~Aa~~l~~~l~~~aa~~l~~~~~~l~~~~g~~~~~~~~~~~~~~~el~~~~~~~~~~l~~~~~~~~~~~~~~~ 631 (788)
T 1t3q_B 552 IGAGSIGRAASIVRERVKQLAGHLLEAASEDIVIEDGLVHVAGVPAKGMPFAEVVGAAYFADATHPPGFDATLEATATYD 631 (788)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTSCGGGEEEETTEEEETTEEEEEEEHHHHHHHHHHCGGGCCTTCCCCCEEEEECC
T ss_pred HHHHHHHHHHHHHHHHHHHHhHhhhCCCHHHEEEeCCEEEEccCCCCcccHHHHHHHHhhcCcccccCccCCcccccccC
Confidence 999999999999999999999988752 123789999976643211 233333444
Q ss_pred CCCCccccccEEEEEEEEEEECCCCcEEEEEEEEEecCCccCCccccchhhhchhHHHHHHHhccCceecCCCccccCCC
Q 002311 740 PDFTSMKYLNYGAAVSEVEINLLTGETTIVQSDIIYDCGQSLNPAVDLGQIEGSFVQGIGFFMLEEYPTNSDGLVVSEGT 819 (937)
Q Consensus 740 ~~~~~~~~~~~ga~~aeVeVD~~TG~v~V~r~~~v~D~G~vINP~~v~gQi~Ggi~qGiG~AL~Ee~~~d~~G~~l~~~~ 819 (937)
+. +.+|+||||++|||||++||+++|+|+++++|||++|||++++||||||++||||+||+||+.||++|+++|+||
T Consensus 632 ~~---~~~~~~ga~~aeVeVD~~TG~v~V~r~~~v~D~G~~iNP~~~~gQieGG~~qGiG~aL~Ee~~~d~~G~~~~~~~ 708 (788)
T 1t3q_B 632 PS---DLVLANGGHAAIVEIDASTYATRVTDFFAVEDCGTMINPMIVEGQIRGGIAQAIGQTLLEEVIYDDFGQLVTTTL 708 (788)
T ss_dssp CS---SCEEEEEEEEEEEEEETTTCCEEEEEEEEEEECBSCSCHHHHHHHHHHHHHHHHHHHHTCCBCBCTTSCBCCCST
T ss_pred CC---CCCcceEEEEEEEEEECCCceEEEEEEEEEEECCccCCHHHHHHHHHHhHHHHHHHHhcceeEECCCCCCCCCCh
Confidence 43 345799999999999999999999999999999999999999999999999999999999999998899999999
Q ss_pred CCCCCCCCCCCCCeeEEEEecCCCCCCCCCCccccCCCCccchhhHHHHHHHHHHHHHHhhhcccccCCCCcccccCCCC
Q 002311 820 WTYKIPTLDTIPKQFNVEILNSGHHKKRVLSSKASGEPPLLLAVSVHCATRAAIREARKQLLSWSQLDQSDLTFDLEVPA 899 (937)
Q Consensus 820 ~dY~iP~~~diP~~i~v~~~e~~~~p~gp~GaKGvGE~~~~~~~av~~Ai~nAi~~A~~~~~~~~~~~g~~~~~~~~lP~ 899 (937)
+||+||++.|+|+ |+++++|++ +|.+|||+||+||+++++ +++||+|||++|+.++ | ++++++|+
T Consensus 709 ~dY~ip~~~D~P~-i~v~~ve~~-~~~~p~GaKGvGE~~~~~---~a~AiaNAI~~A~~~~-------G---~r~~~lP~ 773 (788)
T 1t3q_B 709 MDYLIPTTLDVPD-IRIRHLETP-SPLVPGGIKGMGESAMIS---APAAVVAAVNDALAHL-------E---VVIETVPI 773 (788)
T ss_dssp TTSCCCCTTTCCC-EEEEECCCC-CTTSGGGBCCCTTHHHHH---HHHHHHHHHHHHHGGG-------T---CCCCEESC
T ss_pred hhccCCCcccCCC-EEEEEEeCC-CCCCCCCCccccccchhh---HHHHHHHHHHHHHHhc-------C---CccccCCC
Confidence 9999999999995 999999975 578999999999999987 6679999999999543 3 68899999
Q ss_pred CHHHHHHhcCCC
Q 002311 900 TVQVVKELCGPD 911 (937)
Q Consensus 900 Tpe~v~~a~~~~ 911 (937)
|||+||++|...
T Consensus 774 tpe~v~~al~~~ 785 (788)
T 1t3q_B 774 TPERIFRSIQER 785 (788)
T ss_dssp CHHHHHHHHHTC
T ss_pred CHHHHHHHHhhc
Confidence 999999998653
No 10
>1n62_B Carbon monoxide dehydrogenase large chain; CODH, molybdenum, molybdopterin, oxidoreductase; HET: CUB MCN FAD; 1.09A {Oligotropha carboxidovorans} SCOP: d.41.1.1 d.133.1.1 PDB: 1n5w_B* 1n61_B* 1n60_B* 1n63_B* 1zxi_B*
Probab=100.00 E-value=1.4e-158 Score=1457.40 Aligned_cols=716 Identities=22% Similarity=0.268 Sum_probs=640.2
Q ss_pred CCCCCccCCcccccccccccccccCCCCCCcEEEEEEecCCCCeEEEEEecCCcC-CCCEEEEEeccCCCccCCCccCCC
Q 002311 158 PVGEPIPKSGAALQASGEAIFVDDIPSPINCLYGAFVYSTKPLVRIRSVEIKSKS-LPGVSAFLSYKDIPEAGQNIGSRT 236 (937)
Q Consensus 158 ~vG~~~~R~d~~~kvtG~a~Y~~Di~~~pgmL~a~~vrSp~ahArI~sID~s~A~-~pGVvaV~T~~Dip~~g~~~~~~~ 236 (937)
.||++++|+|+.+||||+++|++|+. +|||||++++|||++||||+|||+|+|+ +|||++|+|++|+| +.|.....
T Consensus 20 ~iG~~~~R~d~~~kvtG~a~Y~~D~~-~pgmL~a~~vrSp~aha~I~sID~s~A~~~PGV~~V~t~~D~p--~~~~~~~~ 96 (809)
T 1n62_B 20 GMGCKRKRVEDIRFTQGKGNYVDDVK-LPGMLFGDFVRSSHAHARIKSIDTSKAKALPGVFAVLTAADLK--PLNLHYMP 96 (809)
T ss_dssp CTTCCCCCTHHHHHTTTCCCBGGGCC-CTTCEEEEEEECSCSSEEEEEEECHHHHHSTTEEEEEEHHHHG--GGTCSEEE
T ss_pred cCCCCCcCcchHHhccceeeehhhcC-CCCCEEEEEEeCCCCceEEEecchHHHhhCCCeEEEEEhHHcc--cccccccc
Confidence 49999999999999999999999996 7999999999999999999999999999 99999999999998 33211111
Q ss_pred --CCCCcccCCCCceeecCCcEEEEEeCCHHHHHHhcccceEEEccCCCCCCcCCHHHHhcCCC--Cccc-CC-------
Q 002311 237 --KFGPEPLFADELTHCAGQPIAFVVADTQKIANRAADLAVVDYDVGNLEPPILSVEEAVGRSS--FFEV-PS------- 304 (937)
Q Consensus 237 --~~~~~p~la~~~Vry~G~pVA~VvAet~~~A~~Aa~lI~Vey~~e~L~p~v~d~~~Al~~~a--~~~~-~~------- 304 (937)
...++|+|++++|||+|||||+|||+|+++|++|+++|+|+| |+| |+++|+++|+++++ +|+. +.
T Consensus 97 ~~~~~~~~~la~~~Vry~Gq~VA~VvA~t~~~A~~Aa~~v~Vey--e~l-p~v~~~~~Al~~~a~~i~~~~~~~~~~~~~ 173 (809)
T 1n62_B 97 TLAGDVQAVLADEKVLFQNQEVAFVVAKDRYVAADAIELVEVDY--EPL-PVLVDPFKAMEPDAPLLREDIKDKMTGAHG 173 (809)
T ss_dssp CTTSSEEESSCSSEECSTTCEEEEEEESSHHHHHHHHHHCEEEE--EEC-CCCCCGGGTTSTTCCCCCGGGTTCCEETTE
T ss_pred ccCCCCcccccCceEEEcCCcEEEEEECCHHHHHHHhCcceEEE--EeC-CCcCCHHHHhhcCCceeccccccccccccc
Confidence 113578999999999999999999999999999999999999 899 99999999999987 3432 12
Q ss_pred -----ccc---cccc-CChhhhcccCCeEEEEEEEEecccccCCccCCceEEEECC-CCcEEEEeCCCChHHHHHHHHHH
Q 002311 305 -----FLY---PKSV-GDISKGMNEADHKILSAEVKLGSQYYFYMETQTALAVPDE-DNCLVVYSSIQCPEYAHATIARC 374 (937)
Q Consensus 305 -----~~~---~~~~-Gd~e~af~~A~~vvve~~~~~~~~~h~~mEp~~avA~~~~-dg~l~V~~stQ~p~~~r~~lA~~ 374 (937)
|+. .... ||++++|++|+++ ||++|++++|+|+||||++|+|+|++ +|+|+||+|||+|+.+|..||++
T Consensus 174 ~~~~~n~~~~~~~~~~Gd~~~afa~A~~v-ve~~y~~~~~~h~~mEp~~~~A~~~~~~g~l~v~~stQ~p~~~r~~~A~~ 252 (809)
T 1n62_B 174 ARKHHNHIFRWEIGDKEGTDATFAKAEVV-SKDMFTYHRVHPSPLETCQCVASMDKIKGELTLWGTFQAPHVIRTVVSLI 252 (809)
T ss_dssp ECSSTTEEEEEEEECHHHHHHHHHHCSEE-EEEEEEECCBCCCCSSCCEEEEEEETTTTEEEEEECCSSHHHHHHHHHHH
T ss_pred ccccccccccccccccCChhhhhccCCEE-EEEEEEECCEeccCCCCceEEEEEeCCCCeEEEEECCcChHHHHHHHHHH
Confidence 542 2467 9999999999996 99999999999999999999999985 68999999999999999999999
Q ss_pred hCCCCCcEEEEeccCCCCCCCCCcccchHHHHHHHHHHhCCCCEEEEcChhhhhhhcCCCCceEEEEEEEECCCCcEEEE
Q 002311 375 LGIPEHNVRVITRRVGGGFGGKAIKAMPVATACALAAYKLCRPVRIYVNRKTDMVMAGGRHPMKIEYNVGFKSNGKITAL 454 (937)
Q Consensus 375 Lglp~~kVrV~~~~vGGgFG~K~~~~~~~~~~aAlaA~~~gRPVk~~~~R~E~~~~~~~R~~~~~~~k~g~d~dG~i~A~ 454 (937)
||||++||||+++++|||||+|... +..++++|++|+++||||||+|||+|+|+++++||++.+++|+|+|+||+|+|+
T Consensus 253 Lglp~~~VrV~~~~vGGgFG~K~~~-~~~~~~aA~~A~~~grPVkl~~tR~e~~~~~~~R~~~~~~~~~g~d~dG~i~a~ 331 (809)
T 1n62_B 253 SGLPEHKIHVIAPDIGGGFGNKVGA-YSGYVCAVVASIVLGVPVKWVEDRMENLSTTSFARDYHMTTELAATKDGKILAM 331 (809)
T ss_dssp HCCCGGGEEEECCBCSCCTTTTSSC-CHHHHHHHHHHHHHSSCEEEECCHHHHHHHSCEECCEEEEEEEEECTTCCEEEE
T ss_pred hCCCHHHEEEEeCCCCCCCcccccc-chHHHHHHHHHHHhCCCEEEEechHHHhhhcCCCCCeEEEEEEEECCCCcEEEE
Confidence 9999999999999999999999863 454678899999999999999999999999999999999999999999999999
Q ss_pred EEEEEeeCCCCCC-CCCch-hhhhh-ccCCCCccccEEEEEEEeecCCCCCC-ccCCCCh-hHHHHHHHHHHHHHHHHcC
Q 002311 455 QLNILIDAGQYPD-VSPNI-PAYMI-GALKKYDWGALHFDIKVCRTNLPSRT-AMRAPGE-VQGSFIAEAVIEHVASTLS 529 (937)
Q Consensus 455 ~~~~~~d~Gay~~-~~~~~-~~~~~-~~~~~Y~ipn~~~~~~~v~TN~~p~g-a~RG~G~-pq~~fa~E~~mD~lA~~lG 529 (937)
+++++.|+|+|.+ ++..+ ...+. ...++|+|||++++++.|+||++|+| ||||||. ||++|++|++||++|++||
T Consensus 332 ~~~~~~d~Gay~~~~~~~v~~~~~~~~~~~~Y~ipn~~~~~~~v~TN~~~~g~a~Rg~G~~~q~~fa~E~~mDelA~~lG 411 (809)
T 1n62_B 332 RCHVLADHGAFDACADPSKWPAGFMNICTGSYDMPVAHLAVDGVYTNKASGGVAYRCSFRVTEAVYAIERAIETLAQRLE 411 (809)
T ss_dssp EEEEEEECCSSCCCCCCTTCTTTTGGGTTTTBCCSCEEEEEEEECCSSCCEESCSSCTTTHHHHHHHHHHHHHHHHHHHT
T ss_pred EEEEEEeCCcCcccccchhhhhhhhhhcCCCcCCCcEEEEEEEEECCCCCCCCEecCCCccHHHHHHHHHHHHHHHHHHC
Confidence 9999999999965 66633 22322 34789999999999999999999999 9999999 9999999999999999999
Q ss_pred CCHHHHHHhhcCCCCCccccccCCCCccccC-CHHHHHHHHHHhcCChhhHHHHH----HHhhccCCcceeeeecceEee
Q 002311 530 MEVDFVRSINLHTHNSLNLFYESSAGELEEY-TIPLIWDRLAVSSSFNQRTEVIK----EFNRSNLWRKKGISRVPIVYD 604 (937)
Q Consensus 530 ~DP~e~R~kNl~~~~~~~~~~~~~~g~~~~~-~~~~~l~~~~~~~~~~~r~~~~~----~~~~~~~~~~~Gig~a~~~~~ 604 (937)
|||+|||+||++++++ +||.+++|+.+++ ++++||++++++++|.+++++.. .||+..+|++||+|++++.++
T Consensus 412 ~DP~e~R~~N~~~~~~--~p~~~~~g~~~~~~~~~~~l~~~~~~~~w~~~~~~~~~~~~~fn~g~~~~~rGiGia~~~~~ 489 (809)
T 1n62_B 412 MDSADLRIKNFIQPEQ--FPYMAPLGWEYDSGNYPLAMKKAMDTVGYHQLRAEQKAKQEAFKRGETREIMGIGISFFTEI 489 (809)
T ss_dssp CCHHHHHHHHBCCGGG--CSEECTTSCEECCCCHHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTSCSEEEEEEEEEEECC
T ss_pred cCHHHHHHHhccCCCC--CccccCCCcccCCCCHHHHHHHHHHHcCchhhHHhHHhhhhhhccCCCceeEEEEEEEEEEe
Confidence 9999999999998764 4677888988876 89999999999999986544333 344333367899999999887
Q ss_pred cCCC------------CCceEEEEccCCcEEEEeccccccccHHHHHHHHHHHHhcccccCCCCCCCCcEEEecCCCccc
Q 002311 605 VPLM------------STPGKVSILSDGSVVVEVGGIELGQGLWTKVKQMAAFALSSIQCGGMGDLLETVRVIQADTLSV 672 (937)
Q Consensus 605 ~g~~------------~~~a~v~l~~DG~v~v~~g~~e~GqG~~T~~aqiaAe~Lgi~~~~~~~~~~~~I~v~~~dT~~~ 672 (937)
++++ .++++|+|++||+|+|++|++|||||++|+++|||||+||| |+|+|+|..+||+.+
T Consensus 490 ~g~~~~~~~~~~~~~~~~~a~v~l~~DG~v~v~~g~~e~GqG~~T~~aQiaAe~LGi--------p~e~V~v~~~DT~~~ 561 (809)
T 1n62_B 490 VGAGPSKNCDILGVSMFDSAEIRIHPTGSVIARMGTKSQGQGHETTYAQIIATELGI--------PADDIMIEEGNTDTA 561 (809)
T ss_dssp BSCCCTTTCEETTEECCEEEEEEECTTSCEEEEESCCCSSSCHHHHHHHHHHHHHTC--------CGGGEEEECCBTTTS
T ss_pred ecccccccccccccCCcccEEEEEecCCeEEEEECCCCCCCCHHHHHHHHHHHHhCC--------CHHHEEEecCCCCCC
Confidence 7754 36899999999999999999999999999999999999999 999999999999999
Q ss_pred cCCCCCcccchhhhhHHHHHHHHHHHHHHHHHHHHHHHhc------------------cCccCHHHHHHHHHhc---C--
Q 002311 673 IQGGLTAGSTKSEASCQAVRNCCKILVERLTPLRERLQAQ------------------MGSVKWETLIQQAYLQ---S-- 729 (937)
Q Consensus 673 p~~~~t~aSr~t~~~g~Av~~Aa~~l~~~l~~~aa~~~~~------------------~~~~~~~~~~~~~~~~---~-- 729 (937)
|++++|+|||+|+++|+||++||++||+||+++++++++. +..++|.+++..++.. +
T Consensus 562 p~~~~t~aSr~t~~~G~Av~~Aa~~l~~~l~~~aa~~l~~~~~~l~~~~g~v~~~~~~~~~~~~~e~~~~~~~~~~~~~~ 641 (809)
T 1n62_B 562 PYGLGTYGSRSTPTAGAATAVAARKIKAKAQMIAAHMLEVHEGDLEWDVDRFRVKGLPEKFKTMKELAWASYNSPPPNLE 641 (809)
T ss_dssp CCCCCSCTTCTTTTHHHHHHHHHHHHHHHHHHHHHHHHTSCGGGEEECSSEEEETTEEEEEEEHHHHHHHHHHSCCTTSC
T ss_pred CCCCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHEEEeCCEEEEccCCCCcccHHHHHHHHhhccCcccc
Confidence 9999999999999999999999999999999999988752 1237899999766422 1
Q ss_pred ceeEEEEEecCCCCccccccEEEEEEEEEEECCCCcEEEEEEEEEecCCccCCccccchhhhchhHHHHHHHhccCceec
Q 002311 730 VSLSASSLYLPDFTSMKYLNYGAAVSEVEINLLTGETTIVQSDIIYDCGQSLNPAVDLGQIEGSFVQGIGFFMLEEYPTN 809 (937)
Q Consensus 730 ~~l~~~~~~~~~~~~~~~~~~ga~~aeVeVD~~TG~v~V~r~~~v~D~G~vINP~~v~gQi~Ggi~qGiG~AL~Ee~~~d 809 (937)
.+|.++++|.++ ..+|+||||++|||||++||+++|+|+++++|||++|||++++||||||++||||+||+||+.||
T Consensus 642 ~~l~~~~~~~~~---~~~~~~ga~~aeVeVD~~TG~v~V~r~~~v~D~G~viNP~~~~gQieGG~~qGlG~aL~Ee~~~d 718 (809)
T 1n62_B 642 PGLEAVNYYDPP---NMTYPFGAYFCIMDIDVDTGVAKTRRFYALDDCGTRINPMIIEGQVHGGLTEAFAVAMGQEIRYD 718 (809)
T ss_dssp SSCEEEEEECCS---SCBCCEEEEEEEEEEETTTCCEEEEEEEEEEECBSCSCHHHHHHHHHHHHHHHHHHHHTCCCEEC
T ss_pred ccceeeeeccCC---CCccceeEEEEEEEEECCcCeEEEEEEEEEEECCccCCHHHHHHHHHHHHHHHHHHHHhCceEEC
Confidence 145777777553 24579999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCccccCCCCCCCCCCCCCCCCeeEEEEecCCCCCCCCCCccccCCCCccchhhHHHHHHHHHHHHHHhhhcccccCCC
Q 002311 810 SDGLVVSEGTWTYKIPTLDTIPKQFNVEILNSGHHKKRVLSSKASGEPPLLLAVSVHCATRAAIREARKQLLSWSQLDQS 889 (937)
Q Consensus 810 ~~G~~l~~~~~dY~iP~~~diP~~i~v~~~e~~~~p~gp~GaKGvGE~~~~~~~av~~Ai~nAi~~A~~~~~~~~~~~g~ 889 (937)
++|+++|+||+||+||++.|+|+ |++++++++ +|.+|||+||+||+++++ +++||+|||++|+.++ |
T Consensus 719 ~~G~~~~~~~~dY~ip~~~D~P~-i~v~~ve~~-~~~~p~GaKGvGE~~~~~---~apAiaNAI~~A~~~~-------G- 785 (809)
T 1n62_B 719 EQGNVLGASFMDFFLPTAVETPK-WETDYTVTP-SPHHPIGAKGVGESPHVG---GVPCFSNAVNDAYAFL-------N- 785 (809)
T ss_dssp TTCCEESCSTTTSCCCCTTTSCC-CEEEECCCC-CTTSTTSBCCCTTHHHHH---HHHHHHHHHHHHHHTT-------T-
T ss_pred CCCCCCCCChhhccCCChhhCCC-eEEEEEeCC-CCCCCCCCcccCCcccch---HHHHHHHHHHHHHHhc-------C-
Confidence 99999999999999999999995 999999975 678999999999999987 6779999999999533 3
Q ss_pred CcccccCCCCCHHHHHHhcC
Q 002311 890 DLTFDLEVPATVQVVKELCG 909 (937)
Q Consensus 890 ~~~~~~~lP~Tpe~v~~a~~ 909 (937)
+++++||+|||+||++|.
T Consensus 786 --~r~~~lP~tpe~v~~al~ 803 (809)
T 1n62_B 786 --AGHIQMPHDAWRLWKVGE 803 (809)
T ss_dssp --CCCCCSCCCHHHHHHHHH
T ss_pred --CccccCCCCHHHHHHHHH
Confidence 789999999999999885
No 11
>3hrd_A Nicotinate dehydrogenase large molybdopterin subunit; selenium ligand, iron, iron-sulfur, metal-binding, oxidoreductase; HET: MCN FAD; 2.20A {Eubacterium barkeri}
Probab=100.00 E-value=3.6e-97 Score=851.65 Aligned_cols=404 Identities=26% Similarity=0.407 Sum_probs=369.7
Q ss_pred cCCCCCCCCccCCcccccccccccccccCCCCCCcEEEEEEecCCCCeEEEEEecCCcC-CCCEEEEEeccCCCccCCCc
Q 002311 154 REYFPVGEPIPKSGAALQASGEAIFVDDIPSPINCLYGAFVYSTKPLVRIRSVEIKSKS-LPGVSAFLSYKDIPEAGQNI 232 (937)
Q Consensus 154 ~~~~~vG~~~~R~d~~~kvtG~a~Y~~Di~~~pgmL~a~~vrSp~ahArI~sID~s~A~-~pGVvaV~T~~Dip~~g~~~ 232 (937)
+++++||++++|+|++.||||+++|++|+. +|||||++++|||++||+|+|||+|+|+ +|||++|+|++|+| +.|.
T Consensus 3 ~~~~~iG~~~~R~d~~~kvtG~a~Y~~Di~-~pgmL~a~~vrSp~a~a~I~siD~s~A~~~pGV~~V~t~~d~p--~~~~ 79 (425)
T 3hrd_A 3 KDYQVLGKNKVKVDSLEKVMGTAKFAADYS-FPDMLYAGVFRSTVPHARIVSLDLSKARAIDGVEAVLDYHAIP--GKNR 79 (425)
T ss_dssp CCCSSTBCCCCCTTHHHHHHTCCCBGGGCC-CTTCEEEEEEECSSSSEEEEEEECHHHHTSTTEEEEECGGGCS--SCCC
T ss_pred CCCCccCCcCcCcchHHHCCCceecccccC-CCCCEEEEEEeCCCCCEEEEEeEhHHHhcCCCeEEEEEcccCC--CcCc
Confidence 578899999999999999999999999996 7899999999999999999999999999 99999999999998 4332
Q ss_pred cCCCCCCCcccCCCCceeecCCcEEEEEeCCHHHHHHhcccceEEEccCCCCCCcCCHHHHhcCCCC--cccCCccc---
Q 002311 233 GSRTKFGPEPLFADELTHCAGQPIAFVVADTQKIANRAADLAVVDYDVGNLEPPILSVEEAVGRSSF--FEVPSFLY--- 307 (937)
Q Consensus 233 ~~~~~~~~~p~la~~~Vry~G~pVA~VvAet~~~A~~Aa~lI~Vey~~e~L~p~v~d~~~Al~~~a~--~~~~~~~~--- 307 (937)
......++|+|++++|||+|||||+|||+|+|+|++|+++|+|+| |+| |+++|+++|++++++ |+ ++|+.
T Consensus 80 -~~~~~~~~~~la~~~Vr~~G~~VA~VvA~t~~~A~~A~~~v~V~y--e~l-p~v~~~~~a~~~~a~~~~~-~~n~~~~~ 154 (425)
T 3hrd_A 80 -FGIIIKDEPCLVDDKVRRYGDAIAVVAAQTPDLVQEALDAITIEY--EEL-EGIFTMERALEEDSPAIHG-DTNIHQVK 154 (425)
T ss_dssp -BCSSSCCBCSSCSSCBCSTTCEEEEEEESSHHHHHHHHHHCEEEE--EEC-CCCCCHHHHHSTTSCCSST-TCSEEEEE
T ss_pred -CCCCCCccccccCceEEECCCeEEEEEECCHHHHHHHhcCCeEEE--EeC-CCCCCHHHHhhcCCccccC-CCcccccc
Confidence 112346899999999999999999999999999999999999999 889 999999999998874 33 34542
Q ss_pred ccccCChhhhcccCCeEEEEEEEEecccccCCccCCceEEEECCCCcEEEEeCCCChHHHHHHHHHHhCCCCCcEEEEec
Q 002311 308 PKSVGDISKGMNEADHKILSAEVKLGSQYYFYMETQTALAVPDEDNCLVVYSSIQCPEYAHATIARCLGIPEHNVRVITR 387 (937)
Q Consensus 308 ~~~~Gd~e~af~~A~~vvve~~~~~~~~~h~~mEp~~avA~~~~dg~l~V~~stQ~p~~~r~~lA~~Lglp~~kVrV~~~ 387 (937)
....||++++|++|+++ ||++|++|+|+|+||||++|+|+|+++|+|+||+|||+|+.+|..||++||||++||||+++
T Consensus 155 ~~~~Gd~~~a~a~A~~v-ve~~y~~~~~~H~~mEp~~~~A~~~~~g~l~v~~stQ~p~~~r~~vA~~Lglp~~~VrV~~~ 233 (425)
T 3hrd_A 155 HLEYGDVDAAFKQCDIV-VEDTYSTHRLTHMFIEPDAGVSYYDNEGMLTVVVSTQNPHYDRGEVAGMLALPNSKVRIIQA 233 (425)
T ss_dssp EEEESCHHHHHHTCSEE-EEEEEEECCCCCCCSSCCEEEEEECTTCCEEEEECCSCHHHHHHHHHHHTTCCGGGEEEEEC
T ss_pred ccccCCHHHHhhcCceE-EEEEEEeCCccccCCCCceEEEEECCCCeEEEEECCCCHHHHHHHHHHHhCCChhhEEEEeC
Confidence 35789999999999996 99999999999999999999999987779999999999999999999999999999999999
Q ss_pred cCCCCCCCCCcccchHHHHHHHHHHhCCCCEEEEcChhhhhhhcCCCCceEEEEEEEECCCCcEEEEEEEEEeeCCCCCC
Q 002311 388 RVGGGFGGKAIKAMPVATACALAAYKLCRPVRIYVNRKTDMVMAGGRHPMKIEYNVGFKSNGKITALQLNILIDAGQYPD 467 (937)
Q Consensus 388 ~vGGgFG~K~~~~~~~~~~aAlaA~~~gRPVk~~~~R~E~~~~~~~R~~~~~~~k~g~d~dG~i~A~~~~~~~d~Gay~~ 467 (937)
++|||||+|.+.. .+++||++|+++||||||+|||+|+|+++++||++.+++|+|+|+||+|+|++++++.|+|+|.+
T Consensus 234 ~vGGgFG~K~~~~--~~~~aa~~A~~~grPVk~~~tR~e~~~~~~~R~~~~~~~~~g~d~dG~i~a~~~~~~~~~Ga~~~ 311 (425)
T 3hrd_A 234 TTGGGFGGKLDLS--VQCHCALLTYHTKKPVKMVRSREESTTVSSKRHPMTMHCKTGATKDGRLQAVQVEMFGDTGAYAS 311 (425)
T ss_dssp BCCCCTTTTSSCS--SHHHHHHHHHHHCSCEEEECCHHHHHHHSCBCCCEEEEEEEEECTTCCEEEEEEEEEEEEESSCT
T ss_pred CCCCCCCCCcccC--HHHHHHHHHHHhCCCEEEEeehHHHhhhcCCCCCeEEEEEEEECCCCcEEEEEEEEEEccccccc
Confidence 9999999998643 34678899999999999999999999999999999999999999999999999999999999988
Q ss_pred CCC-chhhhhhccCCCCccccEEEEEEEeecCCCCCCccCCCChhHHHHHHHHHHHHHHHHcCCCHHHHHHhhcCCCCCc
Q 002311 468 VSP-NIPAYMIGALKKYDWGALHFDIKVCRTNLPSRTAMRAPGEVQGSFIAEAVIEHVASTLSMEVDFVRSINLHTHNSL 546 (937)
Q Consensus 468 ~~~-~~~~~~~~~~~~Y~ipn~~~~~~~v~TN~~p~ga~RG~G~pq~~fa~E~~mD~lA~~lG~DP~e~R~kNl~~~~~~ 546 (937)
++. .+.....+..++|+|||++++++.|+||+||+|||||||.+|++|++|++||++|++|||||+|||++|++++++.
T Consensus 312 ~~~~~~~~~~~~~~~~Y~ipn~~~~~~~v~tn~~~~ga~Rg~G~~q~~fa~E~~mDelA~~lg~DP~e~R~~N~~~~~~~ 391 (425)
T 3hrd_A 312 YGPAVITRATVHCMGPYVVPNVRVDAKFVYTNNPMSGAFRGFGVPQASVCHEGQMNALAKALGMDPIDIRILNAHQVGAK 391 (425)
T ss_dssp THHHHHHHHHHHTTCSBCCSCEEEEEEEEECSSSCBCCCTTTTHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHBCCTTCB
T ss_pred cchHHHHHHHhhcCCCccCCcEEEEEEEEECCCCCCCcccCCCchHHHHHHHHHHHHHHHHhCcCHHHHHHHhCCCCCCc
Confidence 765 3344445667899999999999999999999999999999999999999999999999999999999999998753
Q ss_pred cccccCCCCccc-cC-CHHHHHHHHHHhc
Q 002311 547 NLFYESSAGELE-EY-TIPLIWDRLAVSS 573 (937)
Q Consensus 547 ~~~~~~~~g~~~-~~-~~~~~l~~~~~~~ 573 (937)
+++|+++ ++ ++.+||+++++++
T Consensus 392 -----~~~g~~~~~s~~~~~~l~~~~~~~ 415 (425)
T 3hrd_A 392 -----LATGQVLENSVGLIETLEKAREKA 415 (425)
T ss_dssp -----CTTSCBCCSCCCHHHHHHHHHHHH
T ss_pred -----CCCCCEECCCCCHHHHHHHHHHHH
Confidence 4678887 66 9999999998765
No 12
>3hrd_B Nicotinate dehydrogenase medium molybdopterin subunit; selenium ligand, iron, iron-sulfur, metal-binding, oxidoreductase; HET: MCN FAD; 2.20A {Eubacterium barkeri}
Probab=100.00 E-value=3.2e-66 Score=575.38 Aligned_cols=292 Identities=25% Similarity=0.331 Sum_probs=267.0
Q ss_pred cceeeeecceEeecCCC----CCceEEEEccCCcEEEEeccccccccHHHHHHHHHHHHhcccccCCCCCCCCcEEEecC
Q 002311 592 RKKGISRVPIVYDVPLM----STPGKVSILSDGSVVVEVGGIELGQGLWTKVKQMAAFALSSIQCGGMGDLLETVRVIQA 667 (937)
Q Consensus 592 ~~~Gig~a~~~~~~g~~----~~~a~v~l~~DG~v~v~~g~~e~GqG~~T~~aqiaAe~Lgi~~~~~~~~~~~~I~v~~~ 667 (937)
++||+|++++.++++.. ++++.|+|++||+|+|.+|.+|||||++|+++||+||+||+ |+|+|+|..+
T Consensus 2 k~rGiGia~~~~~~g~~~~~~~~~a~v~i~~DG~V~v~~g~~emGQG~~T~laQIaAe~Lgi--------~~e~V~v~~~ 73 (330)
T 3hrd_B 2 KKRGKGVGSMWYGIGNTGLPNPAAAFVEIHGDGSANVMFGAADIGQGSGTAMAQIAAEELGL--------DYEKIHVTWG 73 (330)
T ss_dssp EEEEEEEEEEEEECSSTTSCCCEEEEEEECTTSCEEEEECCCCSSSCHHHHHHHHHHHHHTC--------CGGGEEEEES
T ss_pred cEEEEEEEEEEEecCCCCCCCcceEEEEEeCCCeEEEEECCCCCCCCHHHHHHHHHHHHhCC--------CHHHEEEEec
Confidence 46899999999988732 47899999999999999999999999999999999999999 9999999999
Q ss_pred CCccccCCCCCcccchhhhhHHHHHHHHHHHHHHHHHHHHHHHhc------------------cCccCHHHHHHHHHhcC
Q 002311 668 DTLSVIQGGLTAGSTKSEASCQAVRNCCKILVERLTPLRERLQAQ------------------MGSVKWETLIQQAYLQS 729 (937)
Q Consensus 668 dT~~~p~~~~t~aSr~t~~~g~Av~~Aa~~l~~~l~~~aa~~~~~------------------~~~~~~~~~~~~~~~~~ 729 (937)
||+.+|++++|+|||+|+++|.|+++||++||++|+++|+++++. +..++|.+++..++..+
T Consensus 74 DT~~~p~~~~T~gSrst~~~g~Av~~Aa~~lr~~L~~~AA~~~~~~~~~l~~~~G~v~~~~~~~~~~s~~ela~~a~~~~ 153 (330)
T 3hrd_B 74 DTMVTPDGGATSASRQTLITGNAVILACRQAKETLAKTAAEKLDCAPEELSFRDNTVFITADPERSMTYGELMAAMKAAG 153 (330)
T ss_dssp BTTTSCCCCCSCTTCHHHHHHHHHHHHHHHHHHHHHHHHHSSSCCSSSCCCSSSBCCCCSSCSCSCCBHHHHHHHHHHTT
T ss_pred CCCCCCCCCCCcchHhHHhHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHEEEeCCEEEECCCCCCcccHHHHHHHHhhcC
Confidence 999999999999999999999999999999999999999876642 12578999998887767
Q ss_pred ceeEEEEEecCC----------CCccccccEEEEEEEEEEECCCCcEEEEEEEEEecCCccCCccccchhhhchhHHHHH
Q 002311 730 VSLSASSLYLPD----------FTSMKYLNYGAAVSEVEINLLTGETTIVQSDIIYDCGQSLNPAVDLGQIEGSFVQGIG 799 (937)
Q Consensus 730 ~~l~~~~~~~~~----------~~~~~~~~~ga~~aeVeVD~~TG~v~V~r~~~v~D~G~vINP~~v~gQi~Ggi~qGiG 799 (937)
..+.+.++|.+. +.++.+|+|++|++|||||++||+++|+|+++++|||++|||++++||||||++||||
T Consensus 154 ~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~ga~~~eVeVd~~tG~v~v~~~~~~~D~G~~iNp~~~~gQi~Gg~~~Glg 233 (330)
T 3hrd_B 154 RMAVGAGSYNPNTTGLAPENMSGIPFEVYSYATTIAEVEVDTETGEVDVLKVVSAHDVGTPINRSMVEGQIEGGVTMGQG 233 (330)
T ss_dssp CCEEEEEEECCCCCCCCTTTCCSCCCSCEEEEEEEEEEEEETTTCCEEEEEEEEEEEEESCSBHHHHHHHHHHHHHHHHH
T ss_pred CceeEEEEecCCCCccccccccCCCCCCCceeEEEEEEEEECCCCcEEEEEEEEEEECCccCCHHHHHHHHHHHHHHHHH
Confidence 778888888542 2345678999999999999999999999999999999999999999999999999999
Q ss_pred HHhccCceec-CCCccccCCCCCCCCCCCCCCCCeeEEEEecCCCCCCCCCCccccCCCCccchhhHHHHHHHHHHHHHH
Q 002311 800 FFMLEEYPTN-SDGLVVSEGTWTYKIPTLDTIPKQFNVEILNSGHHKKRVLSSKASGEPPLLLAVSVHCATRAAIREARK 878 (937)
Q Consensus 800 ~AL~Ee~~~d-~~G~~l~~~~~dY~iP~~~diP~~i~v~~~e~~~~p~gp~GaKGvGE~~~~~~~av~~Ai~nAi~~A~~ 878 (937)
+||+|++.|| ++|+++++||+||++|++.|+|+ |++++++++ +|.+|||+||+||+++++ +++||+|||++|+|
T Consensus 234 ~al~E~~~~d~~~G~~~~~~~~~Y~ip~~~d~P~-i~v~~~~~~-~~~~p~GakgvGE~~~~~---~~~Ai~nAi~~A~G 308 (330)
T 3hrd_B 234 FVLMEEIEVNTKNGAIKNPSMSKYIIPSNRDVPE-IHSILVESE-GGPGPFGAKGVGEPALIP---MIPAVVAAIEDALG 308 (330)
T ss_dssp HHHTCCCCBCTTTCCBSCCSTTTSCCCCTTTCCE-EEEEEEECS-CCSSGGGCCCCTTTTTTT---HHHHHHHHHHHHHT
T ss_pred HHhcCceEEeCCCCeECCCCHHHCcCCCcccCCC-EEEEEecCC-CCCCCCcccccCcCcccc---hHHHHHHHHHHHhC
Confidence 9999999998 67999999999999999999995 999999985 567999999999999987 67799999999995
Q ss_pred hhhcccccCCCCcccccCCCCCHHHHHHhcC
Q 002311 879 QLLSWSQLDQSDLTFDLEVPATVQVVKELCG 909 (937)
Q Consensus 879 ~~~~~~~~~g~~~~~~~~lP~Tpe~v~~a~~ 909 (937)
++++++|+|||+||++|+
T Consensus 309 -------------~r~~~lP~tpe~i~~al~ 326 (330)
T 3hrd_B 309 -------------TRFTHTPIMPKDIVAAVK 326 (330)
T ss_dssp -------------SCCCBSCCCHHHHHHHHH
T ss_pred -------------CccccCCCCHHHHHHHHH
Confidence 688999999999999975
No 13
>3hrd_D Nicotinate dehydrogenase small FES subunit; selenium ligand, iron, iron-sulfur, metal-binding, oxidoreductase; HET: MCN FAD; 2.20A {Eubacterium barkeri}
Probab=99.91 E-value=1.9e-25 Score=220.67 Aligned_cols=93 Identities=32% Similarity=0.545 Sum_probs=84.5
Q ss_pred eeEEEEEECCEEEEEecCCCCCChHHHHhccCCCccCCCce---------EEEeCccccCC-------------------
Q 002311 11 RHSVVFAVNGEKFEVSSVDPSTTLLEFLRYHTRFKSVKLGC---------VLVDAEKTHRP------------------- 62 (937)
Q Consensus 11 ~~~i~~~~Ng~~~~~~~~~p~~~Ll~~LR~~~~l~g~k~gC---------vl~dg~~~~~~------------------- 62 (937)
++.|+|+|||+.+++ +++|+++|||+||++++|+|+|.|| |+|||+++++|
T Consensus 3 ~~~i~~~vNG~~~~v-~v~p~~tLLd~LR~~lgltgtk~gC~~G~CGACtV~vdG~~v~sC~~~~~~~~G~~I~TiEgl~ 81 (160)
T 3hrd_D 3 KITINLNLNGEARSI-VTEPNKRLLDLLREDFGLTSVKEGCSEGECGACTVIFNGDPVTTCCMLAGQADESTIITLEGVA 81 (160)
T ss_dssp CEEEEEEETTEEEEE-EECSSSBHHHHHHTTSCCTTSCCSSSSSSSCTTEEEETTEEEEGGGSBGGGGTTEEEECGGGTS
T ss_pred cceEEEEECCEEEEE-ecCCCCCHHHHHHHhcCCCccccccCCCCCCCCEEEECCEEEEchhhhhhhhCCCceEEeCCCC
Confidence 468999999999999 6999999999999999999999999 99999988654
Q ss_pred ---------------------CCCCCCC-----------CCCHHHHHHHHhCCcccCCCCHHHHHHHHHHhhhc
Q 002311 63 ---------------------EPPPGFS-----------KLTISEAEKAIAGNLCRCTGYRPIADACKSFAADV 104 (937)
Q Consensus 63 ---------------------~~~pg~~-----------~p~~~ei~~~l~gnlCRCtgy~~i~~A~~~~~~~~ 104 (937)
+|||||+ +||++||+++|+|||||||||++|++||+++++.+
T Consensus 82 ~~~~l~pvq~af~~~~~~QCGfCtpG~ims~~all~~~~~pt~~eI~~al~GNlCRCtgY~~I~~Av~~aa~~~ 155 (160)
T 3hrd_D 82 EDGKPSLLQQCFLEAGAVQCGYCTPGMILTAKALLDKNPDPTDEEITVAMSGNLCRCTGYIKIHAAVRYAVERC 155 (160)
T ss_dssp BTTBCCHHHHHHHHHTCCSSCSSHHHHHHHHHHHHTTCSSCCHHHHHHHHTTCCCSSSCSHHHHHHHHHHHHHH
T ss_pred CCCccCHHHHHHHHcCCCcCCcchhhHHHHHHHHHHhCCCCCHHHHHHHHcCCCCCCCCcHHHHHHHHHHHHHh
Confidence 2578874 68999999999999999999999999999988654
No 14
>3nvw_A Xanthine dehydrogenase/oxidase; hydroxylase, homodimer, xanthine oxidase, guanine, oxidoredu; HET: FAD MTE GUN; 1.60A {Bos taurus} PDB: 3etr_A* 3ns1_A* 3nvv_A* 3nrz_A* 3nvy_A* 3nvz_A* 3rca_A* 3sr6_A* 3eub_A*
Probab=99.91 E-value=6.7e-26 Score=223.65 Aligned_cols=89 Identities=45% Similarity=0.787 Sum_probs=80.3
Q ss_pred eEEEEEECCEEE-EEecCCCCCChHHHHhccCCCccCCCce---------EEEe----------CccccCC---------
Q 002311 12 HSVVFAVNGEKF-EVSSVDPSTTLLEFLRYHTRFKSVKLGC---------VLVD----------AEKTHRP--------- 62 (937)
Q Consensus 12 ~~i~~~~Ng~~~-~~~~~~p~~~Ll~~LR~~~~l~g~k~gC---------vl~d----------g~~~~~~--------- 62 (937)
..|+|+|||+.+ ++ +++|+++||||||++++|||||.|| |+|| |+++++|
T Consensus 3 ~~i~~~vNG~~~~~~-~~~p~~~Ll~~LR~~lgltGtK~GC~~G~CGACTVlvd~~~~~~~~~~g~~v~SCl~~a~~~~G 81 (164)
T 3nvw_A 3 DELVFFVNGKKVVEK-NADPETTLLAYLRRKLGLRGTKLGCGEGGCGACTVMLSKYDRLQDKIIHFSANACLAPICTLHH 81 (164)
T ss_dssp CCEEEEETTEEEEET-TCCTTCBHHHHHHHTSCCTTSCCSCSSSSSCTTEEEEEEEETTTTEEEEEEEETTTCBGGGCTT
T ss_pred ceEEEEECCEEEEEe-cCCCCCCHHHHHHHHcCCCCcCCCcCCCCCCCCEEEEccccccccccCCcEEehhhhhHHHhCC
Confidence 469999999997 56 7999999999999999999999999 9999 8998764
Q ss_pred --------------------------------CCCCCCC-----------CCCHHHHHHHHhCCcccCCCCHHHHHHHHH
Q 002311 63 --------------------------------EPPPGFS-----------KLTISEAEKAIAGNLCRCTGYRPIADACKS 99 (937)
Q Consensus 63 --------------------------------~~~pg~~-----------~p~~~ei~~~l~gnlCRCtgy~~i~~A~~~ 99 (937)
+|||||+ +|+++||+++|+|||||||||++|++||++
T Consensus 82 ~~I~TiEGL~~~~~~lhpvQ~af~~~~~~QCGfCtPG~imsa~aLl~~~p~pt~~eI~~al~GNlCRCTgY~~I~~Av~~ 161 (164)
T 3nvw_A 82 VAVTTVEGIGSTKTRLHPVQERIAKSHGSQCGFCTPGIVMSMYTLLRNQPEPTVEEIEDAFQGNLCRCTGYRPILQGFRT 161 (164)
T ss_dssp CEEECGGGTCCTTSCCCHHHHHHHHTTCCSSCTTHHHHHHHHHHHHHHCSSCCHHHHHTSCTTCCCSSSCSHHHHHHHHT
T ss_pred cceEEecccCCCCCccCHHHHHHHHcCCCcCccchhhHHHHHHHHHHhCCCCCHHHHHHHHcCCCCCCCCCHHHHHHHHH
Confidence 2567774 689999999999999999999999999997
Q ss_pred Hh
Q 002311 100 FA 101 (937)
Q Consensus 100 ~~ 101 (937)
++
T Consensus 162 ~~ 163 (164)
T 3nvw_A 162 FA 163 (164)
T ss_dssp TC
T ss_pred Hh
Confidence 75
No 15
>1ffv_A CUTS, iron-sulfur protein of carbon monoxide dehydrogenase; hydrolase; HET: ARO PCD FAD; 2.25A {Hydrogenophaga pseudoflava} SCOP: a.56.1.1 d.15.4.2 PDB: 1ffu_A*
Probab=99.89 E-value=5.6e-24 Score=211.39 Aligned_cols=93 Identities=33% Similarity=0.584 Sum_probs=83.7
Q ss_pred eeEEEEEECCEEEEEecCCCCCChHHHHhccCCCccCCCce---------EEEeCccccCC-------------------
Q 002311 11 RHSVVFAVNGEKFEVSSVDPSTTLLEFLRYHTRFKSVKLGC---------VLVDAEKTHRP------------------- 62 (937)
Q Consensus 11 ~~~i~~~~Ng~~~~~~~~~p~~~Ll~~LR~~~~l~g~k~gC---------vl~dg~~~~~~------------------- 62 (937)
.+.|+|+|||+.+++ +++|+++|||+||++++|+|+|.|| |+|||+++++|
T Consensus 3 ~~~i~~~vNG~~~~~-~v~~~~tLLd~LR~~lgltg~k~gC~~G~CGaCtV~vdG~~v~sC~~~~~~~~G~~I~TiEgL~ 81 (163)
T 1ffv_A 3 KKIITVNVNGKAQEK-AVEPRTLLIHFLREELNLTGAHIGCETSHCGACTVDIDGRSVKSCTHLAVQCDGSEVLTVEGLA 81 (163)
T ss_dssp CEEEEEEETTEEEEE-EECTTCBHHHHHHHTSCCTTSCCCCSSSCSCTTEEEETTEEEEGGGSBGGGGTTCEEECGGGTS
T ss_pred CceEEEEECCEEEEE-ecCCCCcHHHHHHhcCCCcccccCCCCCCCCCCEEEECCcEecchHhhHHHhCCceEEEECCCC
Confidence 458999999999999 6999999999999999999999999 99999998654
Q ss_pred ---------------------CCCCCCC-----------CCCHHHHHHHHhCCcccCCCCHHHHHHHHHHhhhc
Q 002311 63 ---------------------EPPPGFS-----------KLTISEAEKAIAGNLCRCTGYRPIADACKSFAADV 104 (937)
Q Consensus 63 ---------------------~~~pg~~-----------~p~~~ei~~~l~gnlCRCtgy~~i~~A~~~~~~~~ 104 (937)
.|+|||+ +||++||+++|+|||||||||++|++||+.+++.+
T Consensus 82 ~~~~l~pvq~a~~~~~~~QCG~CtpG~imsa~all~~~~~pt~~ei~~~l~gnlCRCtgY~~I~~Av~~~a~~~ 155 (163)
T 1ffv_A 82 NKGVLHAVQEGFYKEHGLQCGFCTPGMLMRAYRFLQENPNPTEAEIRMGMTGNLCRCTGYQNIVKAVQYAARKL 155 (163)
T ss_dssp BTTBCCHHHHHHHHTTCCSSCSSHHHHHHHHHHHHHHCSSCCHHHHHHHTTTCCCSSSCSHHHHHHHHHHHHHH
T ss_pred CCCCcCHHHHHHHHhCCccCccccHhHHHHHHHHHHcCCCCCHHHHHHHHcCCccCCCCCHHHHHHHHHHHHHh
Confidence 2567774 68999999999999999999999999999987643
No 16
>1n62_A Carbon monoxide dehydrogenase small chain; CODH, molybdenum, molybdopterin, oxidoreductase; HET: CUB MCN FAD; 1.09A {Oligotropha carboxidovorans} SCOP: a.56.1.1 d.15.4.2 PDB: 1n5w_A* 1n61_A* 1n60_A* 1n63_A* 1zxi_A*
Probab=99.88 E-value=1.2e-23 Score=209.66 Aligned_cols=92 Identities=34% Similarity=0.586 Sum_probs=82.9
Q ss_pred eeEEEEEECCEEEEEecCCCCCChHHHHhccCCCccCCCce---------EEEeCccccCC-------------------
Q 002311 11 RHSVVFAVNGEKFEVSSVDPSTTLLEFLRYHTRFKSVKLGC---------VLVDAEKTHRP------------------- 62 (937)
Q Consensus 11 ~~~i~~~~Ng~~~~~~~~~p~~~Ll~~LR~~~~l~g~k~gC---------vl~dg~~~~~~------------------- 62 (937)
.++|+|+|||+.+++ +++|+++||++||++++|+|+|.|| |+|||+++++|
T Consensus 3 ~~~i~~~vNG~~~~~-~v~~~~tLLd~LR~~lgl~g~k~gC~~G~CGaCtV~vdG~~v~SC~~~~~~~~G~~V~TiEgL~ 81 (166)
T 1n62_A 3 KAHIELTINGHPVEA-LVEPRTLLIHFIREQQNLTGAHIGCDTSHCGACTVDLDGMSVKSCTMFAVQANGASITTIEGMA 81 (166)
T ss_dssp CEEEEEEETTEEEEE-EECTTCBHHHHHHHTSCCTTSCCCCSSSCSCTTEEEETTEEEEGGGSBGGGGTTCEEECGGGSS
T ss_pred CceEEEEECCEEEEE-ecCCCCcHHHHHHHcCCCCccccCCCCCCCCCCEEEECCcEEechhhhHHHhCCceEEEeCCCC
Confidence 468999999999999 6999999999999999999999999 99999988643
Q ss_pred ----------------------CCCCCCC-----------CCCHHHHHHHHhCCcccCCCCHHHHHHHHHHhhh
Q 002311 63 ----------------------EPPPGFS-----------KLTISEAEKAIAGNLCRCTGYRPIADACKSFAAD 103 (937)
Q Consensus 63 ----------------------~~~pg~~-----------~p~~~ei~~~l~gnlCRCtgy~~i~~A~~~~~~~ 103 (937)
.|+|||+ +||++||+++|+|||||||||++|++||+++++.
T Consensus 82 ~~~~~~~pvq~a~~~~~~~QCG~CtpG~imsa~all~~~~~pt~~eI~~~l~gNlCRCtgY~~I~~Av~~~a~~ 155 (166)
T 1n62_A 82 APDGTLSALQEGFRMMHGLQCGYCTPGMIMRSHRLLQENPSPTEAEIRFGIGGNLCRCTGYQNIVKAIQYAAAK 155 (166)
T ss_dssp CTTSCCCHHHHHHHHTTCCSSCSSHHHHHHHHHHHHHHCSSCCHHHHHHHTTTCCCSSSTTHHHHHHHHHHHHH
T ss_pred CcCCccCHHHHHHHHcCCccCCccchhHHHHHHHHHHcCCCCCHHHHHHHHcCCccCCCCCHHHHHHHHHHHHH
Confidence 1567764 6899999999999999999999999999988754
No 17
>1rm6_C 4-hydroxybenzoyl-COA reductase gamma subunit; xanthine oxidase family, dimer heterotrimers, oxidoreductase; HET: PCD FAD SF4 EPE; 1.60A {Thauera aromatica} SCOP: a.56.1.1 d.15.4.2 PDB: 1sb3_C*
Probab=99.83 E-value=2.3e-21 Score=193.08 Aligned_cols=94 Identities=34% Similarity=0.512 Sum_probs=83.4
Q ss_pred CeeEEEEEECCEEEEEecCCCCCChHHHHhccCCCccCCCce---------EEEeCccccCC------------------
Q 002311 10 TRHSVVFAVNGEKFEVSSVDPSTTLLEFLRYHTRFKSVKLGC---------VLVDAEKTHRP------------------ 62 (937)
Q Consensus 10 ~~~~i~~~~Ng~~~~~~~~~p~~~Ll~~LR~~~~l~g~k~gC---------vl~dg~~~~~~------------------ 62 (937)
|+..|+|+|||+.+++ +++|+++||++||+.++++|+|.|| |+|||+++++|
T Consensus 1 m~~~i~~~vNG~~~~v-~~~~~~tLL~~Lr~~~gl~g~k~gC~~G~CGaCtV~vdG~~v~sC~~~~~~~~G~~v~TiEgL 79 (161)
T 1rm6_C 1 MKNILRLTLNGRARED-LVPDNMLLLDYLRETVGLTGTKQGCDGGECGACTVLVDDRPRLACSTLAHQVAGKKVETVESL 79 (161)
T ss_dssp CEEEEEEEETTEEEEE-EEETTCBHHHHHHHTTCCTTSCCCSSSSSSCTTEEEETTEEEEGGGSBGGGGTTSEEECGGGS
T ss_pred CCceEEEEECCEEEEE-ecCCcCcHHHHHHHcCCCcccccCCCCCCCCCCEEEECCcEEechHHHHHHhCCceEEEECCC
Confidence 4568999999999999 6999999999999999999999999 99999988653
Q ss_pred ----------------------CCCCCCC-----------CCCHHHHHHHHhCCcccCCCCHHHHHHHHHHhhhc
Q 002311 63 ----------------------EPPPGFS-----------KLTISEAEKAIAGNLCRCTGYRPIADACKSFAADV 104 (937)
Q Consensus 63 ----------------------~~~pg~~-----------~p~~~ei~~~l~gnlCRCtgy~~i~~A~~~~~~~~ 104 (937)
.|+|||+ +|+++||+++|+|||||||||.+|++|++++++.+
T Consensus 80 ~~~~~~~p~q~a~~~~~~~qCG~Ctpg~im~a~~ll~~~~~pt~~~i~~~l~gnlcRCtgy~~i~~A~~~~~~~~ 154 (161)
T 1rm6_C 80 ATQGTLSKLQAAFHEKLGTQCGFCTPGMIMASEALLRKNPSPSRDEIKAALAGNLCRCTGYVKIIKSVETAAAAR 154 (161)
T ss_dssp SBTTBCCHHHHHHHHHTCCSSCSSHHHHHHHHHHHHHHCSSCCHHHHHHHTTTCCCSSSCSHHHHHHHHHHHHHH
T ss_pred CCCCccCHHHHHHHHhCCCcCCCCchHHHHHHHHHHhcCCCCCHHHHHHHHcCCeECCCCCHHHHHHHHHHHHHH
Confidence 1456663 68999999999999999999999999999987643
No 18
>2w3s_A Xanthine dehydrogenase; XO, XDH, GOUT, iron, 2Fe-2S, iron-sulfur, oxidoreductase, purine metabolism, molybdenum cofactor, hypoxanthine; HET: MPN FAD XAN; 2.60A {Rhodobacter capsulatus} PDB: 2w3r_A* 2w54_A* 2w55_A* 1jro_A* 1jrp_A*
Probab=99.80 E-value=1.3e-20 Score=217.71 Aligned_cols=89 Identities=37% Similarity=0.662 Sum_probs=81.2
Q ss_pred eEEEEEECCEEEEEecCCCCCChHHHHhccCCCccCCCce---------EEE----eCccccCC----------------
Q 002311 12 HSVVFAVNGEKFEVSSVDPSTTLLEFLRYHTRFKSVKLGC---------VLV----DAEKTHRP---------------- 62 (937)
Q Consensus 12 ~~i~~~~Ng~~~~~~~~~p~~~Ll~~LR~~~~l~g~k~gC---------vl~----dg~~~~~~---------------- 62 (937)
|+|+|+|||+.+++++++|+++|||+|| +++|||+|.|| |+| ||+++++|
T Consensus 1 ~~~~~~vNg~~~~~~~~~~~~~Ll~~Lr-~~~l~g~k~gC~~G~CGaCtV~v~~~~~g~~v~sCl~~~~~~~g~~i~TiE 79 (462)
T 2w3s_A 1 MEIAFLLNGETRRVRIEDPTQSLLEWLR-AEGLTGTKEGCNEGDCGACTVMIRDAAGSRAVNACLMMLPQIAGKALRTIE 79 (462)
T ss_dssp CEEEEEETTEEEEEECSCTTCBHHHHHH-HTTCTTSCCSCSSSSSCTTEEEEEETTEEEEEETTTCBGGGGTTCEEECGG
T ss_pred CcEEEEECCEEEEEecCCCCCcHHHHHH-HcCCCccCCCCCCCCcCCcEEEEEecCCCeEEEchhhhHHHhCCCcEEEEC
Confidence 4799999999999956999999999999 99999999999 999 99998765
Q ss_pred -------------------------CCCCCCC-------CCCHHHHHHHHhCCcccCCCCHHHHHHHHHHh
Q 002311 63 -------------------------EPPPGFS-------KLTISEAEKAIAGNLCRCTGYRPIADACKSFA 101 (937)
Q Consensus 63 -------------------------~~~pg~~-------~p~~~ei~~~l~gnlCRCtgy~~i~~A~~~~~ 101 (937)
.|||||+ +||++||+++|+|||||||||++|++|++.++
T Consensus 80 gl~~~~~~~~~~q~a~~~~~~~QCG~CtpG~im~~~~ll~p~~~~i~~~l~gnlCRCtgy~~i~~a~~~~~ 150 (462)
T 2w3s_A 80 GIAAPDGRLHPVQQAMIDHHGSQCGFCTPGFIVSMAAAHDRDRKDYDDLLAGNLCRCTGYAPILRAAEAAA 150 (462)
T ss_dssp GTSCTTSCCCHHHHHHHHTTCCSSCTTHHHHHHHHHHHHHTTCCCHHHHSTTCCCSSSCSHHHHHHHHHHH
T ss_pred CCCCCCCCCCHHHHHHHHhCCCCCCCCcchHHHHHHHHHCCCHHHHHHHHcCCcccCCCcHHHHHHHHHHh
Confidence 2567775 69999999999999999999999999999887
No 19
>1t3q_A Quinoline 2-oxidoreductase small subunit; QOR, molybdenum, MCD; HET: FAD MCN; 1.80A {Pseudomonas putida} SCOP: a.56.1.1 d.15.4.2
Probab=99.72 E-value=2.1e-18 Score=173.30 Aligned_cols=93 Identities=29% Similarity=0.481 Sum_probs=81.9
Q ss_pred CeeEEEEEECCEEEEEecCCCCCChHHHHhccCCCccCCCce---------EEEeCccccCC------------------
Q 002311 10 TRHSVVFAVNGEKFEVSSVDPSTTLLEFLRYHTRFKSVKLGC---------VLVDAEKTHRP------------------ 62 (937)
Q Consensus 10 ~~~~i~~~~Ng~~~~~~~~~p~~~Ll~~LR~~~~l~g~k~gC---------vl~dg~~~~~~------------------ 62 (937)
..|.|+|+|||+.+++ +++|+++||++||++++|+|+|.|| |+|||+++++|
T Consensus 8 ~~m~i~~~ing~~~~~-~v~~~~tlL~~Lr~~~gl~g~~~~C~~G~CGaC~V~vdG~~v~sC~~~~~~~~G~~v~Tiegl 86 (168)
T 1t3q_A 8 QLMRISATINGKPRVF-YVEPRMHLADALREVVGLTGTKIGCEQGVCGSCTILIDGAPMRSCLTLAVQAEGCSIETVEGL 86 (168)
T ss_dssp CCEEEEEEETTEEEEE-EECTTSBHHHHHHHTTCCTTSCCSCSSSSSCTTEEEETTEEEEGGGSBGGGGTTCEEECGGGT
T ss_pred CcceEEEEECCEEEEE-ecCCCCcHHHHHHhcCCCCccccCCCCCCCCCcEEEECCCEeechhhHHHHhCCCeEEEEcCC
Confidence 4578999999999999 6999999999999989999999999 99999987653
Q ss_pred ----------------------CCCCCCC-----------CCCHHHHHHHHhCCcccCCCCHHHHHHHHHHhhh
Q 002311 63 ----------------------EPPPGFS-----------KLTISEAEKAIAGNLCRCTGYRPIADACKSFAAD 103 (937)
Q Consensus 63 ----------------------~~~pg~~-----------~p~~~ei~~~l~gnlCRCtgy~~i~~A~~~~~~~ 103 (937)
.|+|||+ +|+++||+++|+|||||||+|.+|++|++.+++.
T Consensus 87 ~~~~~~~~~q~a~~~~~~~qCG~C~pg~i~~a~~ll~~~~~p~~~~i~~~l~gnlcRCt~y~~~v~A~~~~~~~ 160 (168)
T 1t3q_A 87 SQGEKLNALQDSFRRHHALQCGFCTAGMLATARSILAENPAPSRDEVREVMSGNLCRCTGYETIIDAITDPAVA 160 (168)
T ss_dssp CCSSSCCHHHHHHHHTTCCSSCSSHHHHHHHHHHHHHHCSSCCHHHHHHHGGGSCCSSSCSHHHHHHHTCHHHH
T ss_pred CCccccCHHHHHHHHhCCCcCCCchHHHHHHHHHHHhcCCCCCHHHHHHHHcCCcccCCCchHHHHHHHHHHHH
Confidence 1456653 5899999999999999999999999999987754
No 20
>1l5p_A Ferredoxin; [2Fe-2S] cluster, electron transfer, iron-sulfur protein, metalloprotein, oxidoreductase; 2.20A {Trichomonas vaginalis} SCOP: d.15.4.1
Probab=93.14 E-value=0.083 Score=46.97 Aligned_cols=37 Identities=19% Similarity=0.267 Sum_probs=33.3
Q ss_pred EEEEEECCEEEEEecCCCCCChHHHHhccCCCccCCCce
Q 002311 13 SVVFAVNGEKFEVSSVDPSTTLLEFLRYHTRFKSVKLGC 51 (937)
Q Consensus 13 ~i~~~~Ng~~~~~~~~~p~~~Ll~~LR~~~~l~g~k~gC 51 (937)
+|+|++||+.+++ +++++++||+.||++ |+.|++.+|
T Consensus 2 ~v~i~~~g~~~~~-~~~~g~tll~a~~~~-gi~gi~~~C 38 (93)
T 1l5p_A 2 TITAVKGGVKKQL-KFEDDQTLFTVLTEA-GLMSADDTC 38 (93)
T ss_dssp EEEEEETTEEEEE-ECCTTEEHHHHHHTT-TSSCCTTSC
T ss_pred eEEEEeCCcEEEE-EECCCChHHHHHHHc-CCCcCCcCC
Confidence 5789999999999 699999999999986 888888888
No 21
>1rm6_A 4-hydroxybenzoyl-COA reductase alpha subunit; xanthine oxidase family, dimer heterotrimers, oxidoreductase; HET: PCD FAD SF4 EPE; 1.60A {Thauera aromatica} SCOP: d.41.1.1 d.133.1.1 PDB: 1sb3_A*
Probab=91.63 E-value=2.9 Score=51.17 Aligned_cols=188 Identities=16% Similarity=0.161 Sum_probs=108.7
Q ss_pred ccCCceEEEECCCCcEEEEeCCCCh-----HHHHHHHHHHhCCCCCcEEEEe------ccCCCCCCCCCcccchHHHHHH
Q 002311 340 METQTALAVPDEDNCLVVYSSIQCP-----EYAHATIARCLGIPEHNVRVIT------RRVGGGFGGKAIKAMPVATACA 408 (937)
Q Consensus 340 mEp~~avA~~~~dg~l~V~~stQ~p-----~~~r~~lA~~Lglp~~kVrV~~------~~vGGgFG~K~~~~~~~~~~aA 408 (937)
++..++....+.||.++|+++++.. ..+.+.+|+.||+|.++|+|.. |+-+|.+|++... ..-.++-
T Consensus 457 ~~~~~a~v~l~~dG~v~v~~g~~e~GqG~~T~~aQiaAe~Lgip~e~V~v~~~DT~~~p~~~~t~aSr~t~--~~G~Av~ 534 (769)
T 1rm6_A 457 EPHATVNLKLDFDGGITLLTGAADIGQGSNTMASQVAAEVLGVRLSRIRVISADSALTPKDNGSYSSRVTF--MVGNASI 534 (769)
T ss_dssp CCSEEEEEEECTTCCEEEEECCCCSSSCHHHHHHHHHHHHHTCCGGGEEEEESBTTTSCCCCCSCTTCHHH--HHHHHHH
T ss_pred CCCccEEEEEeCCCeEEEEECCccCCCCHHHHHHHHHHHHhCCCHHHEEEecCCCCCCCCCCCCccchHHH--HHHHHHH
Confidence 3556788888889999999988543 3456667889999999999986 4556778887531 1111111
Q ss_pred HHHHh------------CCCC---EE---------------E--------------------EcChhhhhhhcCC-----
Q 002311 409 LAAYK------------LCRP---VR---------------I--------------------YVNRKTDMVMAGG----- 433 (937)
Q Consensus 409 laA~~------------~gRP---Vk---------------~--------------------~~~R~E~~~~~~~----- 433 (937)
.||.+ ++.+ +. + .+.-...+...+.
T Consensus 535 ~Aa~~l~~~l~~~aa~~l~~~~~~l~~~~g~v~~~~~~~~~~~~~el~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~~~~ 614 (769)
T 1rm6_A 535 SAAEELKGVLVKAAAKKLDAREEDIEVIDEMFMVSGSQDPGLSFQEVVKAAMVDSGTITVKGTYTCPTEFQGDKKIRGSA 614 (769)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCGGGEEEETTEEEETTCSSCCEEHHHHHHHHHTTTCSEEEEEEECCCGGGSCCTTCGGGG
T ss_pred HHHHHHHHHHHHHHHHHhCCCHHHeEEeCCEEEEccCCCCccCHHHHHHhhhhcccccccccceeccccccccccccccc
Confidence 22222 2110 00 0 0100001100010
Q ss_pred ---CC--ce-EEEEEEEECCC-CcEEEEEEEEEeeCCCCCCCC----Cc---h----hhhh------------hccCCCC
Q 002311 434 ---RH--PM-KIEYNVGFKSN-GKITALQLNILIDAGQYPDVS----PN---I----PAYM------------IGALKKY 483 (937)
Q Consensus 434 ---R~--~~-~~~~k~g~d~d-G~i~A~~~~~~~d~Gay~~~~----~~---~----~~~~------------~~~~~~Y 483 (937)
.. ++ -+-.++-+|.+ |++.=.++....|+|--.+-. ++ + ..++ .....-|
T Consensus 615 ~~~~~~~~~ga~~aeVeVD~~TG~v~V~r~~~v~D~G~~iNP~~~~gQieGG~~qGiG~aL~Ee~~~d~G~~~~~~~~dY 694 (769)
T 1rm6_A 615 IGATMGFCYAAQVVEASVDEITGKVTAHKVWVAVDVGKALNPLAVEGQTQGGVWMGMGQALSEETVYDNGRMVHGNILDY 694 (769)
T ss_dssp TTCCSCEEEEEEEEEEEECTTTCCEEEEEEEEEEECSSCSSHHHHHHHHHHHHHHHHHHHHTCCCCEETTEESCCSTTTS
T ss_pred cCCCCCcceEEEEEEEEEECCCceEEEEEEEEEEECCccCCHHHHHHHHHhHHHHHHHHHhcceeEecCCEeCCCChhhc
Confidence 11 11 33467778875 999999999999999764411 00 0 0000 0112346
Q ss_pred ccccE----EEEEEEeecCCCCCCcc--CCCChhHHHHHHHHHHHHHHHHcCC
Q 002311 484 DWGAL----HFDIKVCRTNLPSRTAM--RAPGEVQGSFIAEAVIEHVASTLSM 530 (937)
Q Consensus 484 ~ipn~----~~~~~~v~TN~~p~ga~--RG~G~pq~~fa~E~~mD~lA~~lG~ 530 (937)
.+|.. .++...+-+..+ .++| +|.|.+-..-+.=.+.+-+...+|.
T Consensus 695 ~ip~~~D~P~i~v~~ve~~~~-~~p~GaKGvGE~~~~~~~~AIaNAv~~A~G~ 746 (769)
T 1rm6_A 695 RVPTIVESPDIEVIIVESMDP-NGPFGAKEASEGMLAGFLPAIHEAVYEAVGV 746 (769)
T ss_dssp CCCCTTTCCEEEEEEECCCCT-TSGGGCCCCSSTTTTTHHHHHHHHHHHHHSC
T ss_pred cCCCcccCCCEEEEEEeCCCC-CCCCCCccccccchhhHHHHHHHHHHHHhCC
Confidence 55433 467777777655 4676 8888876655555567777777775
No 22
>1t3q_B Quinoline 2-oxidoreductase large subunit; QOR, molybdenum, MCD; HET: FAD MCN; 1.80A {Pseudomonas putida} SCOP: d.41.1.1 d.133.1.1
Probab=90.58 E-value=1.5 Score=53.93 Aligned_cols=184 Identities=16% Similarity=0.078 Sum_probs=105.7
Q ss_pred CCceEEEECCCCcEEEEeCCCC----h-HHHHHHHHHHhCCCCCcEEEEe-----ccCCCCCCCCCcccchHHHHHHHHH
Q 002311 342 TQTALAVPDEDNCLVVYSSIQC----P-EYAHATIARCLGIPEHNVRVIT-----RRVGGGFGGKAIKAMPVATACALAA 411 (937)
Q Consensus 342 p~~avA~~~~dg~l~V~~stQ~----p-~~~r~~lA~~Lglp~~kVrV~~-----~~vGGgFG~K~~~~~~~~~~aAlaA 411 (937)
..++....+.||.++|+++++. . ..+.+.+|+.||+|.++|+|.. |+-+|.+|++... ..-.++-.||
T Consensus 484 ~~~a~v~l~~dG~v~v~~g~~e~GqG~~T~~aQiaAe~LGip~~~V~v~~~DT~~p~~~~t~aSr~t~--~~G~Av~~Aa 561 (788)
T 1t3q_B 484 HDSATVRIDPTGKVTVTTSLASSGQGHETTLAQIAADVLGVPASDVVIQAGSTKNTYGFGAYASRGAV--IGAGSIGRAA 561 (788)
T ss_dssp CBEEEEEECTTSCEEEEESCCCSSSCHHHHHHHHHHHHHTSCGGGEEEECSBTTSCCBCCSCTTCHHH--HHHHHHHHHH
T ss_pred cccEEEEEecCCeEEEEECCcCCCCCHHHHHHHHHHHHHCCCHHHEEEecCCCCCCCCCCCccchHHH--HHHHHHHHHH
Confidence 4567788888999999998754 3 3456667889999999999987 5567778887532 1222222233
Q ss_pred HhCCC------------C---EEEE-------------cChhh----------hhhh------------cCCCC--ce-E
Q 002311 412 YKLCR------------P---VRIY-------------VNRKT----------DMVM------------AGGRH--PM-K 438 (937)
Q Consensus 412 ~~~gR------------P---Vk~~-------------~~R~E----------~~~~------------~~~R~--~~-~ 438 (937)
.++.+ + +.+. ++-.| ++.. ..... ++ -
T Consensus 562 ~~l~~~l~~~aa~~l~~~~~~l~~~~g~~~~~~~~~~~~~~~el~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ga 641 (788)
T 1t3q_B 562 SIVRERVKQLAGHLLEAASEDIVIEDGLVHVAGVPAKGMPFAEVVGAAYFADATHPPGFDATLEATATYDPSDLVLANGG 641 (788)
T ss_dssp HHHHHHHHHHHHHHHTSCGGGEEEETTEEEETTEEEEEEEHHHHHHHHHHCGGGCCTTCCCCCEEEEECCCSSCEEEEEE
T ss_pred HHHHHHHHHHhHhhhCCCHHHEEEeCCEEEEccCCCCcccHHHHHHHHhhcCcccccCccCCcccccccCCCCCCcceEE
Confidence 32211 0 0000 00000 0110 00000 11 2
Q ss_pred EEEEEEECCC-CcEEEEEEEEEeeCCCCCCCC----Cc-------hhhhh-------------hccCCCCccccE----E
Q 002311 439 IEYNVGFKSN-GKITALQLNILIDAGQYPDVS----PN-------IPAYM-------------IGALKKYDWGAL----H 489 (937)
Q Consensus 439 ~~~k~g~d~d-G~i~A~~~~~~~d~Gay~~~~----~~-------~~~~~-------------~~~~~~Y~ipn~----~ 489 (937)
+-.++-+|.+ |++.=.++....|+|--.+-. ++ +..++ .....-|.+|.. .
T Consensus 642 ~~aeVeVD~~TG~v~V~r~~~v~D~G~~iNP~~~~gQieGG~~qGiG~aL~Ee~~~d~~G~~~~~~~~dY~ip~~~D~P~ 721 (788)
T 1t3q_B 642 HAAIVEIDASTYATRVTDFFAVEDCGTMINPMIVEGQIRGGIAQAIGQTLLEEVIYDDFGQLVTTTLMDYLIPTTLDVPD 721 (788)
T ss_dssp EEEEEEEETTTCCEEEEEEEEEEECBSCSCHHHHHHHHHHHHHHHHHHHHTCCBCBCTTSCBCCCSTTTSCCCCTTTCCC
T ss_pred EEEEEEEECCCceEEEEEEEEEEECCccCCHHHHHHHHHHhHHHHHHHHhcceeEECCCCCCCCCChhhccCCCcccCCC
Confidence 2356677775 999999999999999764310 00 00000 011233654432 3
Q ss_pred EEEEEeecCCCCCCcc--CCCChhHHHHHHHHHHHHHHHHc
Q 002311 490 FDIKVCRTNLPSRTAM--RAPGEVQGSFIAEAVIEHVASTL 528 (937)
Q Consensus 490 ~~~~~v~TN~~p~ga~--RG~G~pq~~fa~E~~mD~lA~~l 528 (937)
++...+-+..+ .++| +|.|.+-..-+.=.+.+-+...+
T Consensus 722 i~v~~ve~~~~-~~p~GaKGvGE~~~~~~a~AiaNAI~~A~ 761 (788)
T 1t3q_B 722 IRIRHLETPSP-LVPGGIKGMGESAMISAPAAVVAAVNDAL 761 (788)
T ss_dssp EEEEECCCCCT-TSGGGBCCCTTHHHHHHHHHHHHHHHHHH
T ss_pred EEEEEEeCCCC-CCCCCCccccccchhhHHHHHHHHHHHHH
Confidence 56666776554 5676 79999887776666777777777
No 23
>1n62_B Carbon monoxide dehydrogenase large chain; CODH, molybdenum, molybdopterin, oxidoreductase; HET: CUB MCN FAD; 1.09A {Oligotropha carboxidovorans} SCOP: d.41.1.1 d.133.1.1 PDB: 1n5w_B* 1n61_B* 1n60_B* 1n63_B* 1zxi_B*
Probab=89.66 E-value=7.5 Score=47.84 Aligned_cols=183 Identities=15% Similarity=0.121 Sum_probs=104.4
Q ss_pred CceEEEECCCCcEEEEeCCCCh----H-HHHHHHHHHhCCCCCcEEEEe------ccCCCCCCCCCcccchHHHHHHHHH
Q 002311 343 QTALAVPDEDNCLVVYSSIQCP----E-YAHATIARCLGIPEHNVRVIT------RRVGGGFGGKAIKAMPVATACALAA 411 (937)
Q Consensus 343 ~~avA~~~~dg~l~V~~stQ~p----~-~~r~~lA~~Lglp~~kVrV~~------~~vGGgFG~K~~~~~~~~~~aAlaA 411 (937)
.++....+.||.++|+++++.. + .+.+.+|+.||+|.++|+|.. |+-+|.+|++.... .-.++-.||
T Consensus 507 ~~a~v~l~~DG~v~v~~g~~e~GqG~~T~~aQiaAe~LGip~e~V~v~~~DT~~~p~~~~t~aSr~t~~--~G~Av~~Aa 584 (809)
T 1n62_B 507 DSAEIRIHPTGSVIARMGTKSQGQGHETTYAQIIATELGIPADDIMIEEGNTDTAPYGLGTYGSRSTPT--AGAATAVAA 584 (809)
T ss_dssp EEEEEEECTTSCEEEEESCCCSSSCHHHHHHHHHHHHHTCCGGGEEEECCBTTTSCCCCCSCTTCTTTT--HHHHHHHHH
T ss_pred ccEEEEEecCCeEEEEECCCCCCCCHHHHHHHHHHHHhCCCHHHEEEecCCCCCCCCCCCcccchHHHH--HHHHHHHHH
Confidence 5677788889999999988543 3 456667889999999999986 45578889887532 222222233
Q ss_pred HhCCC------------C----------EEE------EcChhhhhhh-------------------cC--CCCce-EEEE
Q 002311 412 YKLCR------------P----------VRI------YVNRKTDMVM-------------------AG--GRHPM-KIEY 441 (937)
Q Consensus 412 ~~~gR------------P----------Vk~------~~~R~E~~~~-------------------~~--~R~~~-~~~~ 441 (937)
.++.+ + |.. .++-.|-... .. ...++ .+-.
T Consensus 585 ~~l~~~l~~~aa~~l~~~~~~l~~~~g~v~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ga~~a 664 (809)
T 1n62_B 585 RKIKAKAQMIAAHMLEVHEGDLEWDVDRFRVKGLPEKFKTMKELAWASYNSPPPNLEPGLEAVNYYDPPNMTYPFGAYFC 664 (809)
T ss_dssp HHHHHHHHHHHHHHHTSCGGGEEECSSEEEETTEEEEEEEHHHHHHHHHHSCCTTSCSSCEEEEEECCSSCBCCEEEEEE
T ss_pred HHHHHHHHHHHHHHhCCCHHHEEEeCCEEEEccCCCCcccHHHHHHHHhhccCccccccceeeeeccCCCCccceeEEEE
Confidence 33221 0 000 0010110000 00 00111 2235
Q ss_pred EEEECC-CCcEEEEEEEEEeeCCCCCCCC----Cc-------hhhhh-------------hccCCCCccccE----EEEE
Q 002311 442 NVGFKS-NGKITALQLNILIDAGQYPDVS----PN-------IPAYM-------------IGALKKYDWGAL----HFDI 492 (937)
Q Consensus 442 k~g~d~-dG~i~A~~~~~~~d~Gay~~~~----~~-------~~~~~-------------~~~~~~Y~ipn~----~~~~ 492 (937)
++-+|. .|++.=.++....|+|--.+-. ++ +..++ .....-|.+|.. .++.
T Consensus 665 eVeVD~~TG~v~V~r~~~v~D~G~viNP~~~~gQieGG~~qGlG~aL~Ee~~~d~~G~~~~~~~~dY~ip~~~D~P~i~v 744 (809)
T 1n62_B 665 IMDIDVDTGVAKTRRFYALDDCGTRINPMIIEGQVHGGLTEAFAVAMGQEIRYDEQGNVLGASFMDFFLPTAVETPKWET 744 (809)
T ss_dssp EEEEETTTCCEEEEEEEEEEECBSCSCHHHHHHHHHHHHHHHHHHHHTCCCEECTTCCEESCSTTTSCCCCTTTSCCCEE
T ss_pred EEEEECCcCeEEEEEEEEEEECCccCCHHHHHHHHHHHHHHHHHHHHhCceEECCCCCCCCCChhhccCCChhhCCCeEE
Confidence 667776 7999999999999999764311 00 00000 011233644432 3555
Q ss_pred EEeecCCCCCCcc--CCCChhHHHHHHHHHHHHHHHHc
Q 002311 493 KVCRTNLPSRTAM--RAPGEVQGSFIAEAVIEHVASTL 528 (937)
Q Consensus 493 ~~v~TN~~p~ga~--RG~G~pq~~fa~E~~mD~lA~~l 528 (937)
..+-+.. +.++| +|.|.+-..-+.=.+.+-+...+
T Consensus 745 ~~ve~~~-~~~p~GaKGvGE~~~~~~apAiaNAI~~A~ 781 (809)
T 1n62_B 745 DYTVTPS-PHHPIGAKGVGESPHVGGVPCFSNAVNDAY 781 (809)
T ss_dssp EECCCCC-TTSTTSBCCCTTHHHHHHHHHHHHHHHHHH
T ss_pred EEEeCCC-CCCCCCCcccCCcccchHHHHHHHHHHHHH
Confidence 5565542 35676 89999877666666666776666
No 24
>1iue_A Ferredoxin; electron transport, iron-sulfur; 1.70A {Plasmodium falciparum} SCOP: d.15.4.1
Probab=89.63 E-value=0.43 Score=42.67 Aligned_cols=39 Identities=8% Similarity=0.215 Sum_probs=31.8
Q ss_pred CeeEEEEEECCEEEEEecCCCCCChHHHHhccCCCccCCCce
Q 002311 10 TRHSVVFAVNGEKFEVSSVDPSTTLLEFLRYHTRFKSVKLGC 51 (937)
Q Consensus 10 ~~~~i~~~~Ng~~~~~~~~~p~~~Ll~~LR~~~~l~g~k~gC 51 (937)
|..+|+|++||..+++ +++++++||+.|++. |+ .++.+|
T Consensus 1 m~~~v~~~~~~~~~~~-~~~~g~tlL~a~~~~-gi-~i~~~C 39 (98)
T 1iue_A 1 AFYNITLRTNDGEKKI-ECNEDEYILDASERQ-NV-ELPYSC 39 (98)
T ss_dssp CEEEEEEEETTEEEEE-EEETTSCHHHHHHHT-TC-CCCCSS
T ss_pred CcEEEEEEeCCCeEEE-EeCCCCcHHHHHHHc-CC-CCCCCC
Confidence 3457999999976667 578999999999986 77 688888
No 25
>1dgj_A Aldehyde oxidoreductase; beta half-barrel, four-helix bundle, beta barrel; HET: MCN; 2.80A {Desulfovibrio desulfuricans} SCOP: a.56.1.1 d.15.4.2 d.41.1.1 d.133.1.1
Probab=89.58 E-value=1.5 Score=54.73 Aligned_cols=186 Identities=16% Similarity=0.160 Sum_probs=111.2
Q ss_pred ccCCceEEEECCCCcEEEEeCCCCh-----HHHHHHHHHHh---CCCCCcEEEEe------ccCCCCCCCCCcccchHHH
Q 002311 340 METQTALAVPDEDNCLVVYSSIQCP-----EYAHATIARCL---GIPEHNVRVIT------RRVGGGFGGKAIKAMPVAT 405 (937)
Q Consensus 340 mEp~~avA~~~~dg~l~V~~stQ~p-----~~~r~~lA~~L---glp~~kVrV~~------~~vGGgFG~K~~~~~~~~~ 405 (937)
+...++....+.||.++|+++++.. ..+.+.+|+.| |+|.++|+|.. |+-+|.+|++.... .-.
T Consensus 631 ~~~~~a~v~l~~DG~v~v~~g~~e~GqG~~T~~aQiaAe~L~~~Gip~~~V~v~~~DT~~~p~~~~t~gSr~t~~--~G~ 708 (907)
T 1dgj_A 631 PDTSEAWVELNDDGSVTLGNSWEDHGQGADAGSLGTAHEALRPLGITPENIHLVMNDTSKTPNSGPAGGSRSQVV--TGN 708 (907)
T ss_dssp SCEEEEEEEECTTSCEEEEECCCCSSSCHHHHHHHHHHHHTGGGTCCGGGEEEEESBTTTSCCCCCSCTTCTTTH--HHH
T ss_pred CCCccEEEEEeCCCeEEEEECCcCCCccHHHHHHHHHHHHHhhcCCCHHHEEEecCCCCCCCCCCCCccchHHHH--HHH
Confidence 3456778888889999999988543 34566678899 99999999986 45578899987532 222
Q ss_pred HHHHHHHhCCC---CEE-EEcChhhhhh--------------------hcCCCCc-----e-EEEEEEEECCC-CcEEEE
Q 002311 406 ACALAAYKLCR---PVR-IYVNRKTDMV--------------------MAGGRHP-----M-KIEYNVGFKSN-GKITAL 454 (937)
Q Consensus 406 ~aAlaA~~~gR---PVk-~~~~R~E~~~--------------------~~~~R~~-----~-~~~~k~g~d~d-G~i~A~ 454 (937)
++-.||.++.+ ++. -.+ ..|++. .+...+| + -+-.++-+|.+ |++.=.
T Consensus 709 Av~~Aa~~l~~~l~~~aa~~l-~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ga~~aEVeVD~~TG~v~V~ 787 (907)
T 1dgj_A 709 AIRVACEMLIEGMRKPGGGFF-TPAEMKAEGRPMRYDGKWTAPAKDCDAKGQGSPFACYMYGLFLTEVAVEVATGKATVE 787 (907)
T ss_dssp HHHHHHHHHHHHTBCSSSSBC-CHHHHHHTTCCCEEEEEEECSCBCCCTTSCSBCCSEEEEEEEEEEEEEETTTTEEEEE
T ss_pred HHHHHHHHHHHHHHHHhhhcC-CHHHHhhCCeEEEecceeeccCCCcCCCCCCCCCCCCceEEEEEEEEEECCCCcEEEE
Confidence 33334444321 110 000 111111 0011021 1 22466777764 999999
Q ss_pred EEEEEeeCCCCCCCCCchh--------h----hh---------hccCCCCccccE----E-EEEEEeecCCCCCCcc--C
Q 002311 455 QLNILIDAGQYPDVSPNIP--------A----YM---------IGALKKYDWGAL----H-FDIKVCRTNLPSRTAM--R 506 (937)
Q Consensus 455 ~~~~~~d~Gay~~~~~~~~--------~----~~---------~~~~~~Y~ipn~----~-~~~~~v~TN~~p~ga~--R 506 (937)
++....|+|--.+-. ... . ++ .....-|.+|.. . ++...+-+..+ .++| +
T Consensus 788 r~~~v~D~G~~iNP~-~~~gQieGG~~qGiG~aL~Ee~~G~~~~~~~~dY~ip~~~D~P~~i~v~~~e~~~~-~~p~GaK 865 (907)
T 1dgj_A 788 KMVCVADIGKICNKL-VVDGQIYGGLAQGVGLALSEDYEDLKKHSTMGGAGIPSIKMIPDDIEIVYVETPRK-DGPFGAS 865 (907)
T ss_dssp EEEEEEECBSCSCHH-HHHHHHHHHHHHHHHHHHTCCCCSTTTTSSTTTTTCCCGGGSCSCEEEEECCCCCT-TSGGGBC
T ss_pred EEEEEEECCccCCHH-HHHHHHHHHHHHHHHHHHHHHhcCeeCCCChhhCcCCChHHCCCcEEEEEecCCCC-CCCCCCc
Confidence 999999999764411 000 0 00 112244655543 2 66666777555 4776 7
Q ss_pred CCChhHHHHHHHHHHHHHHHHcCC
Q 002311 507 APGEVQGSFIAEAVIEHVASTLSM 530 (937)
Q Consensus 507 G~G~pq~~fa~E~~mD~lA~~lG~ 530 (937)
|.|.+-..-+.=.+.+-+...+|.
T Consensus 866 GvGE~~~~~~~~AIaNAv~~A~G~ 889 (907)
T 1dgj_A 866 GVGEMPLTAPHAAIINGIYNACGA 889 (907)
T ss_dssp CCTTGGGSSHHHHHHHHHHHHHSC
T ss_pred ccCccccchHHHHHHHHHHHhhCC
Confidence 999887765555667777777775
No 26
>1a70_A Ferredoxin; iron-sulfur protein, photosynthesis, electron transport; 1.70A {Spinacia oleracea} SCOP: d.15.4.1 PDB: 1pfd_A
Probab=89.39 E-value=0.46 Score=42.38 Aligned_cols=38 Identities=11% Similarity=0.175 Sum_probs=30.5
Q ss_pred eeEEEEEECCEEEEEecCCCCCChHHHHhccCCCccCCCce
Q 002311 11 RHSVVFAVNGEKFEVSSVDPSTTLLEFLRYHTRFKSVKLGC 51 (937)
Q Consensus 11 ~~~i~~~~Ng~~~~~~~~~p~~~Ll~~LR~~~~l~g~k~gC 51 (937)
..+|+|+.|+..+++ +++++++||+.|++. |+. ++.+|
T Consensus 2 ~~~v~~~~~~~~~~~-~~~~g~tlL~a~~~~-gi~-i~~~C 39 (97)
T 1a70_A 2 AYKVTLVTPTGNVEF-QCPDDVYILDAAEEE-GID-LPYSC 39 (97)
T ss_dssp EEEEEEEETTEEEEE-EEETTSCHHHHHHHT-TCC-CCCSS
T ss_pred eEEEEEEeCCceEEE-EeCCCCcHHHHHHHc-CCC-cccCC
Confidence 457899887766677 588999999999985 774 78887
No 27
>3zyv_A AOH1; oxidoreductase, molybdenum cofactor; HET: MTE FAD; 2.54A {Mus musculus}
Probab=88.76 E-value=4.7 Score=52.40 Aligned_cols=92 Identities=37% Similarity=0.708 Sum_probs=78.1
Q ss_pred CCeeEEEEEECCEEEEEecCCCCCChHHHHhccCCCccCCCce---------EEE---e---Cc----cccCC-------
Q 002311 9 GTRHSVVFAVNGEKFEVSSVDPSTTLLEFLRYHTRFKSVKLGC---------VLV---D---AE----KTHRP------- 62 (937)
Q Consensus 9 ~~~~~i~~~~Ng~~~~~~~~~p~~~Ll~~LR~~~~l~g~k~gC---------vl~---d---g~----~~~~~------- 62 (937)
..+..|.|+|||+.+++++++|++|||+|||++++|||||+|| |+| | ++ +|++|
T Consensus 5 ~~~~~l~F~vNG~~v~~~~~~p~~tLl~~LR~~~~ltGTK~gC~EG~CGACtV~v~~~~~~~~~~~~~avNsCl~~l~~~ 84 (1335)
T 3zyv_A 5 KESDELIFFVNGKKVTERNADPEVNLLFYLRKVIRLTGTKYGCGGGDCGACTVMISRYDPISKRISHFSATACLVPICSL 84 (1335)
T ss_dssp --CCCEEEEETTEEEEESSCCTTCBHHHHHHHTTCCTTSCCSCSSSSSCTTEEEEEEEETTTTEEEEEEEETTTCBGGGC
T ss_pred CCCCeEEEEECCEEEEeCCCCcCccHHHHHhccCCCcccccccCCCCCcceEEEEeeEeCCCCeEEEEEhhHHHHHHHHh
Confidence 3455799999999999988999999999999999999999999 665 2 22 34433
Q ss_pred ----------------------------------CCCCCCC-----------CCCHHHHHHHHhCCcccCCCCHHHHHHH
Q 002311 63 ----------------------------------EPPPGFS-----------KLTISEAEKAIAGNLCRCTGYRPIADAC 97 (937)
Q Consensus 63 ----------------------------------~~~pg~~-----------~p~~~ei~~~l~gnlCRCtgy~~i~~A~ 97 (937)
+|||||+ .|+++||+++|+|||||||||+||+||+
T Consensus 85 ~g~~v~TvEglg~~~~~lHpvQ~~~a~~hgsQCGFCTPGfVMSmyall~~~~~pt~~~ie~al~GNLCRCTGYRPIldA~ 164 (1335)
T 3zyv_A 85 HGAAVTTVEGIGSTKTRIHPVQERIAKGHGTQCGFCTPGMVMSIYTLLRNHPEPSTEQIMETLGGNLCRCTGYRPIVESA 164 (1335)
T ss_dssp TTCEEECHHHHCCTTSCCCHHHHHHHHTTCCSSCTTHHHHHHHHHHHHHHCSSCCHHHHHHHHTTCCCSSSCSHHHHHHH
T ss_pred cCCEEEeeCCCCCCCCCCCHHHHHHHhcCCCcCCCCCcHHHHHHHHHHHcCCCCCHHHHHHHhCCcccccCCCHHHHHHH
Confidence 3788885 6899999999999999999999999999
Q ss_pred HHH
Q 002311 98 KSF 100 (937)
Q Consensus 98 ~~~ 100 (937)
+++
T Consensus 165 ksf 167 (1335)
T 3zyv_A 165 KSF 167 (1335)
T ss_dssp HTT
T ss_pred HHh
Confidence 865
No 28
>3vr8_B Iron-sulfur subunit of succinate dehydrogenase; membrane protein, reductase, mitochondria MEMB oxidoreductase; HET: FAD HEM RQX EPH; 2.81A {Ascaris suum} PDB: 3vrb_B*
Probab=88.22 E-value=0.26 Score=52.93 Aligned_cols=41 Identities=24% Similarity=0.370 Sum_probs=33.3
Q ss_pred EEEEEecCCC-CCChHHHHhc---cCC-CccCCCce---------EEEeCccccCC
Q 002311 21 EKFEVSSVDP-STTLLEFLRY---HTR-FKSVKLGC---------VLVDAEKTHRP 62 (937)
Q Consensus 21 ~~~~~~~~~p-~~~Ll~~LR~---~~~-l~g~k~gC---------vl~dg~~~~~~ 62 (937)
+.+++ ++++ +++|||+||+ ++. .++.|.|| |.|||+++.+|
T Consensus 55 ~~~~v-~v~~~~~tlLdaL~~i~~~~~ptl~~~~~C~~G~CGsC~V~InG~~~laC 109 (282)
T 3vr8_B 55 QKFDV-DLDKCGTMVLDALIKIKNEVDPTLTFRRSCREGICGSCAMNIAGENTLAC 109 (282)
T ss_pred EEEEE-EeCCCCCcHHHHHHhcCcccCCceeecCCCCCCCCCCCEEEECCEEecch
Confidence 35777 6888 9999999996 334 37899988 99999998876
No 29
>2l32_A Small archaeal modifier protein 2; protein BIN; NMR {Haloferax volcanii}
Probab=88.21 E-value=0.42 Score=40.68 Aligned_cols=48 Identities=25% Similarity=0.326 Sum_probs=36.8
Q ss_pred eEEEEEECCEEEEEecCCCCCChHHHHhccCCCccCCCceEEEeCccccC
Q 002311 12 HSVVFAVNGEKFEVSSVDPSTTLLEFLRYHTRFKSVKLGCVLVDAEKTHR 61 (937)
Q Consensus 12 ~~i~~~~Ng~~~~~~~~~p~~~Ll~~LR~~~~l~g~k~gCvl~dg~~~~~ 61 (937)
|+|+++|||+.....+++++.|+.|+|+. ++|..-.. -|++||+.+..
T Consensus 1 M~v~Vkl~g~~~~~~ev~~g~Tv~dLL~~-Lgl~~~~V-vV~vNG~~v~~ 48 (74)
T 2l32_A 1 MNVTVEVVGEETSEVAVDDDGTYADLVRA-VDLSPHEV-TVLVDGRPVPE 48 (74)
T ss_dssp CEEEEECSSSSEEEEECSTTCSHHHHHHT-TCCCSSCC-CEECCCCCCCT
T ss_pred CEEEEEEeCccceeEEcCCCCcHHHHHHH-cCCCcceE-EEEECCEECCH
Confidence 67899999986332267889999999974 78854444 59999998764
No 30
>2wdq_B Succinate dehydrogenase iron-sulfur subunit; succinate dehydrogenase activity, cell inner membrane, trica acid cycle; HET: FAD HEM CBE; 2.40A {Escherichia coli} PDB: 1nen_B* 2acz_B* 1nek_B* 2wdr_B* 2wdv_B* 2ws3_B* 2wu2_B* 2wu5_B* 2wp9_B*
Probab=87.70 E-value=0.23 Score=51.90 Aligned_cols=42 Identities=14% Similarity=0.192 Sum_probs=35.3
Q ss_pred EEEEEecCCC--CCChHHHHhccC---CCccCCCce---------EEEeCccccCCC
Q 002311 21 EKFEVSSVDP--STTLLEFLRYHT---RFKSVKLGC---------VLVDAEKTHRPE 63 (937)
Q Consensus 21 ~~~~~~~~~p--~~~Ll~~LR~~~---~l~g~k~gC---------vl~dg~~~~~~~ 63 (937)
+.+++ ++++ ++|||++||+.. ..++++.|| |.|||+++.+|.
T Consensus 21 ~~~~v-~~~~~~~~tll~~l~~~~~~~~~l~~~~~C~~g~Cg~C~v~v~G~~~laC~ 76 (238)
T 2wdq_B 21 QDYTL-EADEGRDMMLLDALIQLKEKDPSLSFRRSCREGVCGSDGLNMNGKNGLACI 76 (238)
T ss_dssp EEEEE-ECCTTCCCBHHHHHHHHHHHCTTCCCCCSSSSSSSCTTEEEETTEEEEGGG
T ss_pred EEEEe-ecCCCCCChHHHHHHHhcccCCCccccccCCCCCCCCCEEEECCEEEcccc
Confidence 45677 6888 999999999875 677999998 899999988764
No 31
>2wlb_A ETP1-FD, electron transfer protein 1, mitochondrial; iron-sulfur, iron, transport, ferredoxin, adrenodoxin-like, electron transport; 2.60A {Schizosaccharomyces pombe}
Probab=87.63 E-value=0.34 Score=43.68 Aligned_cols=39 Identities=15% Similarity=0.362 Sum_probs=31.6
Q ss_pred CeeEEEEE-ECCEEEEEecCCCCCChHHHHhccCCCccCCCce
Q 002311 10 TRHSVVFA-VNGEKFEVSSVDPSTTLLEFLRYHTRFKSVKLGC 51 (937)
Q Consensus 10 ~~~~i~~~-~Ng~~~~~~~~~p~~~Ll~~LR~~~~l~g~k~gC 51 (937)
.+.+|+|. .||+.+++ .+.++++||+.||++ |+. ++.+|
T Consensus 2 ~~~~v~~~~~~g~~~~~-~~~~g~tlL~a~~~~-gi~-i~~~C 41 (103)
T 2wlb_A 2 TGIKVFFVTPEGREIMI-EGNEGDSILDLAHAN-NID-LEGAC 41 (103)
T ss_dssp CCEEEEEECTTCCEEEE-EECTTCBHHHHHHHT-TCC-CCCTT
T ss_pred CceEEEEEeCCCCEEEE-EECCCCHHHHHHHHc-CCC-cCcCC
Confidence 34578999 99987788 688999999999985 764 66666
No 32
>3hrd_A Nicotinate dehydrogenase large molybdopterin subunit; selenium ligand, iron, iron-sulfur, metal-binding, oxidoreductase; HET: MCN FAD; 2.20A {Eubacterium barkeri}
Probab=86.59 E-value=1.6 Score=49.64 Aligned_cols=120 Identities=15% Similarity=-0.007 Sum_probs=74.3
Q ss_pred CCceEEEEccCCcEEEEeccccccccHHHHHHHHHHHHhcccccCCCCCCCCcEEEecCCCccccCCCCCcccchhhhhH
Q 002311 609 STPGKVSILSDGSVVVEVGGIELGQGLWTKVKQMAAFALSSIQCGGMGDLLETVRVIQADTLSVIQGGLTAGSTKSEASC 688 (937)
Q Consensus 609 ~~~a~v~l~~DG~v~v~~g~~e~GqG~~T~~aqiaAe~Lgi~~~~~~~~~~~~I~v~~~dT~~~p~~~~t~aSr~t~~~g 688 (937)
+..+....++||+++|+++++. . +...+.+|+.||+ |.++|+|.. |+-+|.+|++.....-
T Consensus 188 p~~~~A~~~~~g~l~v~~stQ~----p-~~~r~~vA~~Lgl--------p~~~VrV~~------~~vGGgFG~K~~~~~~ 248 (425)
T 3hrd_A 188 PDAGVSYYDNEGMLTVVVSTQN----P-HYDRGEVAGMLAL--------PNSKVRIIQ------ATTGGGFGGKLDLSVQ 248 (425)
T ss_dssp CCEEEEEECTTCCEEEEECCSC----H-HHHHHHHHHHTTC--------CGGGEEEEE------CBCCCCTTTTSSCSSH
T ss_pred CceEEEEECCCCeEEEEECCCC----H-HHHHHHHHHHhCC--------ChhhEEEEe------CCCCCCCCCCcccCHH
Confidence 4667777778999999998753 3 3456778899999 999999984 5668899998765432
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCccCH--HHHHHHHHhcCceeEEEEEecCCCCccccccEEEEEEEEEEECCCCcE
Q 002311 689 QAVRNCCKILVERLTPLRERLQAQMGSVKW--ETLIQQAYLQSVSLSASSLYLPDFTSMKYLNYGAAVSEVEINLLTGET 766 (937)
Q Consensus 689 ~Av~~Aa~~l~~~l~~~aa~~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ga~~aeVeVD~~TG~v 766 (937)
-.+..+|+++. ..-.+.| +|-.... .+. .. ..+-.++-+| ..|++
T Consensus 249 ~~aa~~A~~~g------------rPVk~~~tR~e~~~~~-----------~~R--------~~-~~~~~~~g~d-~dG~i 295 (425)
T 3hrd_A 249 CHCALLTYHTK------------KPVKMVRSREESTTVS-----------SKR--------HP-MTMHCKTGAT-KDGRL 295 (425)
T ss_dssp HHHHHHHHHHC------------SCEEEECCHHHHHHHS-----------CBC--------CC-EEEEEEEEEC-TTCCE
T ss_pred HHHHHHHHHhC------------CCEEEEeehHHHhhhc-----------CCC--------CC-eEEEEEEEEC-CCCcE
Confidence 22222232221 1111111 1111100 000 11 1234467787 47999
Q ss_pred EEEEEEEEecCCcc
Q 002311 767 TIVQSDIIYDCGQS 780 (937)
Q Consensus 767 ~V~r~~~v~D~G~v 780 (937)
.=.++.++.|+|-.
T Consensus 296 ~a~~~~~~~~~Ga~ 309 (425)
T 3hrd_A 296 QAVQVEMFGDTGAY 309 (425)
T ss_dssp EEEEEEEEEEEESS
T ss_pred EEEEEEEEEccccc
Confidence 99999999999954
No 33
>1jq4_A Methane monooxygenase component C; [2Fe-2S] ferredoxin, oxidoreductase; NMR {Methylococcus capsulatus str} SCOP: d.15.4.2
Probab=86.39 E-value=0.46 Score=42.38 Aligned_cols=37 Identities=8% Similarity=0.155 Sum_probs=30.2
Q ss_pred eEEEEEEC---CEEEEEecCCCCCChHHHHhccCCCccCCCce
Q 002311 12 HSVVFAVN---GEKFEVSSVDPSTTLLEFLRYHTRFKSVKLGC 51 (937)
Q Consensus 12 ~~i~~~~N---g~~~~~~~~~p~~~Ll~~LR~~~~l~g~k~gC 51 (937)
+.+++++| |..+++ +++++++||+.||+. |+. ++.+|
T Consensus 3 ~~~~v~~~~~~~~~~~~-~~~~g~tlL~a~~~~-gi~-i~~~C 42 (98)
T 1jq4_A 3 RVHTITAVTEDGESLRF-ECRSDEDVITAALRQ-NIF-LMSSC 42 (98)
T ss_dssp CEEEEEEEETTTEEEEE-EEESCCTHHHHHHHH-TCC-CCCSC
T ss_pred CcEEEEEEecCCCcEEE-EeCCCChHHHHHHHc-CCC-CcCCC
Confidence 35778888 878888 688999999999985 775 78887
No 34
>1awd_A Ferredoxin; electron transport, eukaryotic, green ALGA, electron transfer, metalloprotein; 1.40A {'chlorella' fusca} SCOP: d.15.4.1
Probab=84.35 E-value=1.6 Score=38.57 Aligned_cols=36 Identities=11% Similarity=0.203 Sum_probs=28.9
Q ss_pred EEEEEECCEEEEEecCCCCCChHHHHhccCCCccCCCce
Q 002311 13 SVVFAVNGEKFEVSSVDPSTTLLEFLRYHTRFKSVKLGC 51 (937)
Q Consensus 13 ~i~~~~Ng~~~~~~~~~p~~~Ll~~LR~~~~l~g~k~gC 51 (937)
+|+|+.|+..+++ +++++++||+.|++. |+ .++.+|
T Consensus 2 ~v~~~~~~g~~~~-~~~~g~tlL~a~~~~-gi-~i~~~C 37 (94)
T 1awd_A 2 KVTLKTPSGEETI-ECPEDTYILDAAEEA-GL-DLPYSC 37 (94)
T ss_dssp EEEEEETTEEEEE-ECCTTSCHHHHHHHT-TC-CCCCSS
T ss_pred EEEEEeCCCcEEE-EECCCCcHHHHHHHc-CC-CCCcCC
Confidence 5788876656777 689999999999975 77 578887
No 35
>1wri_A Ferredoxin II, ferredoxin; electron transport; 1.20A {Equisetum arvense} SCOP: d.15.4.1
Probab=83.50 E-value=1.4 Score=38.78 Aligned_cols=36 Identities=17% Similarity=0.352 Sum_probs=29.7
Q ss_pred eEEEEEECCEEEEEecCCCCCChHHHHhccCCCccCCCce
Q 002311 12 HSVVFAVNGEKFEVSSVDPSTTLLEFLRYHTRFKSVKLGC 51 (937)
Q Consensus 12 ~~i~~~~Ng~~~~~~~~~p~~~Ll~~LR~~~~l~g~k~gC 51 (937)
.+|+|..||..+++ .++++++||+.|++. | .++.+|
T Consensus 2 ~~V~~~~~~~~~~~-~~~~g~tlL~a~~~~-g--~i~~~C 37 (93)
T 1wri_A 2 YKVTLKTPDGDITF-DVEPGERLIDIGSEK-A--DLPLSC 37 (93)
T ss_dssp EEEEEEETTEEEEE-EECTTSCHHHHHHHH-S--CCCCSS
T ss_pred EEEEEEECCCeEEE-EECCCCcHHHHHHHC-c--CCCCCC
Confidence 36889888876777 688999999999986 6 678887
No 36
>3hrd_B Nicotinate dehydrogenase medium molybdopterin subunit; selenium ligand, iron, iron-sulfur, metal-binding, oxidoreductase; HET: MCN FAD; 2.20A {Eubacterium barkeri}
Probab=82.76 E-value=2.2 Score=46.75 Aligned_cols=59 Identities=14% Similarity=0.048 Sum_probs=45.5
Q ss_pred ccCCceEEEECCCCcEEEEeCCC----ChH-HHHHHHHHHhCCCCCcEEEEe------ccCCCCCCCCCc
Q 002311 340 METQTALAVPDEDNCLVVYSSIQ----CPE-YAHATIARCLGIPEHNVRVIT------RRVGGGFGGKAI 398 (937)
Q Consensus 340 mEp~~avA~~~~dg~l~V~~stQ----~p~-~~r~~lA~~Lglp~~kVrV~~------~~vGGgFG~K~~ 398 (937)
..+.++....++||+++|+++.+ ..+ .+.+.+|+.||+|.++|+|.. |+.+|.+|++..
T Consensus 21 ~~~~~a~v~i~~DG~V~v~~g~~emGQG~~T~laQIaAe~Lgi~~e~V~v~~~DT~~~p~~~~T~gSrst 90 (330)
T 3hrd_B 21 PNPAAAFVEIHGDGSANVMFGAADIGQGSGTAMAQIAAEELGLDYEKIHVTWGDTMVTPDGGATSASRQT 90 (330)
T ss_dssp CCCEEEEEEECTTSCEEEEECCCCSSSCHHHHHHHHHHHHHTCCGGGEEEEESBTTTSCCCCCSCTTCHH
T ss_pred CCcceEEEEEeCCCeEEEEECCCCCCCCHHHHHHHHHHHHhCCCHHHEEEEecCCCCCCCCCCCcchHhH
Confidence 45667778888899999999764 444 445667889999999999986 455678888853
No 37
>2bs2_B Quinol-fumarate reductase iron-sulfur subunit B; 2Fe-2S, 3Fe-4S, 4Fe-4S, citric acid cycle, dihaem cytochrome B; HET: FAD HEM LMT; 1.78A {Wolinella succinogenes} SCOP: a.1.2.1 d.15.4.2 PDB: 2bs3_B* 1e7p_B* 1qlb_B* 2bs4_B*
Probab=81.60 E-value=1 Score=47.04 Aligned_cols=42 Identities=12% Similarity=0.302 Sum_probs=31.8
Q ss_pred EEEEEecCCCCCChHHHHhc---cCCC-ccCCCce---------EEEeCccccCCC
Q 002311 21 EKFEVSSVDPSTTLLEFLRY---HTRF-KSVKLGC---------VLVDAEKTHRPE 63 (937)
Q Consensus 21 ~~~~~~~~~p~~~Ll~~LR~---~~~l-~g~k~gC---------vl~dg~~~~~~~ 63 (937)
+.+++ ++++++||||+||. ++.. .+.+.+| |.|||+++.+|.
T Consensus 24 ~~~~v-~~~~~~tlL~~l~~~~~~~~~~l~~~~~c~~g~Cg~C~v~i~G~~~~aC~ 78 (241)
T 2bs2_B 24 QEYKI-EEAPSMTIFIVLNMIRETYDPDLNFDFVCRAGICGSCGMMINGRPSLACR 78 (241)
T ss_dssp EEEEE-ECCTTCBHHHHHHHHHHHTCTTCCCCCSSSSSSSCTTEEEETTEEEEGGG
T ss_pred EEEEE-eCCCCChHHHHHHHhchhcCCCCccCCCCCCCCCCCCEeEECCCeecchh
Confidence 45777 68999999999986 2333 2678887 889999887653
No 38
>1frd_A Heterocyst [2Fe-2S] ferredoxin; electron transport; 1.70A {Nostoc SP} SCOP: d.15.4.1
Probab=81.17 E-value=1.6 Score=38.77 Aligned_cols=38 Identities=16% Similarity=0.281 Sum_probs=29.0
Q ss_pred eeEEEEEECCE--EEEEecCCCCCChHHHHhccCCCccCCCce
Q 002311 11 RHSVVFAVNGE--KFEVSSVDPSTTLLEFLRYHTRFKSVKLGC 51 (937)
Q Consensus 11 ~~~i~~~~Ng~--~~~~~~~~p~~~Ll~~LR~~~~l~g~k~gC 51 (937)
..+|+|..|+. .+++ +++++++||+.|++. |+. +..+|
T Consensus 2 ~~~V~~~~~~~~~~~~~-~~~~g~tlL~a~~~~-gi~-i~~~C 41 (98)
T 1frd_A 2 SYQVRLINKKQDIDTTI-EIDEETTILDGAEEN-GIE-LPFSC 41 (98)
T ss_dssp EEEEEEEETTTTEEEEE-EEETTSCHHHHHHHT-TCC-CCCSS
T ss_pred ceEEEEEeCCCCCCEEE-EeCCCCcHHHHHHHc-CCC-cccCC
Confidence 45789998553 5666 578999999999875 763 77777
No 39
>2k5p_A THis protein, thiamine-biosynthesis protein; NESG, GMR137, structural genomics, PSI-2, protein structure initiative; NMR {Geobacter metallireducens gs-15} PDB: 3cwi_A
Probab=80.06 E-value=1.3 Score=37.99 Aligned_cols=44 Identities=23% Similarity=0.184 Sum_probs=32.4
Q ss_pred EEEECCEEEEEecCCCCCChHHHHhccCCCccCCCce-EEEeCccccC
Q 002311 15 VFAVNGEKFEVSSVDPSTTLLEFLRYHTRFKSVKLGC-VLVDAEKTHR 61 (937)
Q Consensus 15 ~~~~Ng~~~~~~~~~p~~~Ll~~LR~~~~l~g~k~gC-vl~dg~~~~~ 61 (937)
+++|||+++++ ....+.||.++|.. +++. ...+| |.+||+-+++
T Consensus 2 ~I~vNGe~~e~-~~~~~~Tl~~LL~~-l~~~-~~~~vAVavNg~iVpr 46 (78)
T 2k5p_A 2 NLTVNGKPSTV-DGAESLNVTELLSA-LKVA-QAEYVTVELNGEVLER 46 (78)
T ss_dssp EEEETTEEEEC-SSCSCEEHHHHHHH-HTCS-CTTTCCEEETTEECCT
T ss_pred EEEECCEEEEc-CCCCCCcHHHHHHH-cCCC-CCCcEEEEECCEECCh
Confidence 68999999876 22146899999975 6775 13456 8999987764
No 40
>1tyg_B YJBS; alpha beta barrel, protein-protein complex, THis, BIOS protein; 3.15A {Bacillus subtilis} SCOP: d.15.3.2
Probab=77.84 E-value=1.5 Score=38.57 Aligned_cols=44 Identities=14% Similarity=0.135 Sum_probs=30.6
Q ss_pred eeEEEEEECCEEEEEecCCCC-CChHHHHhccCCCccCCCce-EEEeCcccc
Q 002311 11 RHSVVFAVNGEKFEVSSVDPS-TTLLEFLRYHTRFKSVKLGC-VLVDAEKTH 60 (937)
Q Consensus 11 ~~~i~~~~Ng~~~~~~~~~p~-~~Ll~~LR~~~~l~g~k~gC-vl~dg~~~~ 60 (937)
...++++|||+++++ +.+ .||.++|+. +++. ..++ |.+||+-+.
T Consensus 18 ~~~M~I~vNGe~~el---~~~~~Tv~dLL~~-L~~~--~~~vaVavNg~iV~ 63 (87)
T 1tyg_B 18 GGRHMLQLNGKDVKW---KKDTGTIQDLLAS-YQLE--NKIVIVERNKEIIG 63 (87)
T ss_dssp ----CEEETTEEECC---SSSCCBHHHHHHH-TTCT--TSCCEEEETTEEEC
T ss_pred CcceEEEECCEEEEC---CCCCCcHHHHHHH-hCCC--CCCEEEEECCEECC
Confidence 346689999998865 455 899999975 6764 3455 889998765
No 41
>3nvz_C Xanthine dehydrogenase/oxidase; hydroxylase, homodimer, xanthine oxidase, indole-3-aldehyde, oxidoreductase; HET: FAD MTE I3A; 1.60A {Bos taurus} PDB: 3ns1_C* 3etr_C* 3nvv_C* 3nvw_C* 3nrz_C* 3nvy_C* 3eub_C* 3b9j_C* 1fiq_C* 3rca_C* 3sr6_C*
Probab=76.40 E-value=2.2 Score=52.12 Aligned_cols=59 Identities=12% Similarity=0.066 Sum_probs=45.8
Q ss_pred ccCCceEEEECCCCcEEEEeCCC----ChHH-HHHHHHHHhCCCCCcEEEEec------cCCCCCCCCCc
Q 002311 340 METQTALAVPDEDNCLVVYSSIQ----CPEY-AHATIARCLGIPEHNVRVITR------RVGGGFGGKAI 398 (937)
Q Consensus 340 mEp~~avA~~~~dg~l~V~~stQ----~p~~-~r~~lA~~Lglp~~kVrV~~~------~vGGgFG~K~~ 398 (937)
+.+.++....+.||.++|+++++ ..+. +.+.+|+.||+|.++|+|... +-+|.+|++..
T Consensus 444 ~~~~~a~v~l~~DG~v~v~~g~~e~GQG~~T~~aQiaAe~Lgi~~e~V~v~~~DT~~~p~~~~t~aSr~t 513 (755)
T 3nvz_C 444 LNQAGALIHVYTDGSVLVSHGGTEMGQGLHTKMVQVASKALKIPISKIYISETSTNTVPNSSPTAASVST 513 (755)
T ss_dssp GCEEEEEEEECTTSCEEEEESCCCSSSCHHHHHHHHHHHHHTSCGGGEECCCEETTTSCSCCCSCTTCHH
T ss_pred CCcceEEEEEecCCeEEEEECCCCCCCCHHHHHHHHHHHHHCCCHHHEEEECCCCCCCCCCCCCchhHHH
Confidence 45677888888899999999974 4443 455568899999999999754 44788998864
No 42
>2kl0_A Putative thiamin biosynthesis THis; structural genomics, PSI-2, protein structure initiative, N structural genomics consortium, NESG; NMR {Rhodopseudomonas palustris} PDB: 2lek_A
Probab=76.12 E-value=2.3 Score=35.89 Aligned_cols=39 Identities=18% Similarity=0.219 Sum_probs=30.2
Q ss_pred EEEECCEEEEEecCCCCCChHHHHhccCCCccCCCce-EEEeCcccc
Q 002311 15 VFAVNGEKFEVSSVDPSTTLLEFLRYHTRFKSVKLGC-VLVDAEKTH 60 (937)
Q Consensus 15 ~~~~Ng~~~~~~~~~p~~~Ll~~LR~~~~l~g~k~gC-vl~dg~~~~ 60 (937)
+++|||++++ + ++.||.++|.. +++. ..+| |.+||+-++
T Consensus 2 ~I~vNG~~~e---~-~~~Tl~~LL~~-l~~~--~~~vAV~vNg~iVp 41 (73)
T 2kl0_A 2 LVTINGEQRE---V-QSASVAALMTE-LDCT--GGHFAVALNYDVVP 41 (73)
T ss_dssp CEEETTEEEC---C-CCSBHHHHHHH-TTCC--SSSCEEEESSSEEC
T ss_pred EEEECCEEEE---c-CCCcHHHHHHH-cCCC--CCcEEEEECCEECC
Confidence 5799999875 4 56999999974 6875 3455 899998765
No 43
>1czp_A Ferredoxin I; [2Fe-2S] protein, crystal reduced with dithionite, electron; 1.17A {Nostoc SP} SCOP: d.15.4.1 PDB: 1ewy_C* 1fxa_A 1qt9_A 1qog_A 1j7c_A 1j7b_A 1qof_A 1qob_A 1j7a_A 1qoa_A 1rfk_A 3p63_A 4fxc_A 3ab5_A 1roe_A 2cjn_A 2cjo_A 1off_A 1dox_A 1doy_A ...
Probab=75.33 E-value=3 Score=36.98 Aligned_cols=38 Identities=18% Similarity=0.372 Sum_probs=28.3
Q ss_pred eeEEEEEECCE--EEEEecCCCCCChHHHHhccCCCccCCCce
Q 002311 11 RHSVVFAVNGE--KFEVSSVDPSTTLLEFLRYHTRFKSVKLGC 51 (937)
Q Consensus 11 ~~~i~~~~Ng~--~~~~~~~~p~~~Ll~~LR~~~~l~g~k~gC 51 (937)
..+|+|..++. .+++ +++++++||+.|++. |+. +..+|
T Consensus 2 ~~~V~~~~~~~~~~~~~-~~~~g~tlL~a~~~~-gi~-i~~~C 41 (98)
T 1czp_A 2 TFKVTLINEAEGTKHEI-EVPDDEYILDAAEEQ-GYD-LPFSC 41 (98)
T ss_dssp EEEEEEEETTTTEEEEE-EEETTSCHHHHHHHT-TCC-CCCSS
T ss_pred ceEEEEEeCCCCCcEEE-EeCCCCCHHHHHHHc-CCC-ccCCC
Confidence 45778877542 5566 578999999999975 774 77777
No 44
>1frr_A Ferredoxin I; electron transfer(iron-sulfur protein); 1.80A {Equisetum arvense} SCOP: d.15.4.1
Probab=73.51 E-value=2.8 Score=36.78 Aligned_cols=36 Identities=22% Similarity=0.456 Sum_probs=27.8
Q ss_pred eEEEEE-ECCEEEEEecCCCCCChHHHHhccCCCccCCCce
Q 002311 12 HSVVFA-VNGEKFEVSSVDPSTTLLEFLRYHTRFKSVKLGC 51 (937)
Q Consensus 12 ~~i~~~-~Ng~~~~~~~~~p~~~Ll~~LR~~~~l~g~k~gC 51 (937)
.+|+|. .|| .+++ +++++++||+.|++. |+ .+..+|
T Consensus 2 ~~v~~~~~~g-~~~~-~~~~g~tlL~a~~~~-gi-~i~~~C 38 (95)
T 1frr_A 2 YKTVLKTPSG-EFTL-DVPEGTTILDAAEEA-GY-DLPFSC 38 (95)
T ss_dssp EEEEEEETTE-EEEE-EECTTCCHHHHHHHT-TC-CCCCSS
T ss_pred eEEEEEeCCC-cEEE-EeCCCCcHHHHHHHc-CC-CCCCCC
Confidence 368886 888 5556 578999999999875 76 467777
No 45
>2h88_B Succinate dehydrogenase IP subunit; complex II, membrane protein, heme protein, iron sulfur PROT cytochrome B, oxidoreductase; HET: FAD BHG HEM UNL; 1.74A {Gallus gallus} PDB: 1yq4_B* 1yq3_B* 2fbw_B* 2h89_B* 2wqy_B* 3aef_B* 3abv_B* 3ae1_B* 3ae3_B* 3ae2_B* 3ae5_B* 3ae6_B* 3ae7_B* 3ae8_B* 3ae9_B* 3aea_B* 3aeb_B* 3aec_B* 3aed_B* 3aee_B* ...
Probab=73.03 E-value=1.7 Score=45.74 Aligned_cols=41 Identities=15% Similarity=0.241 Sum_probs=32.6
Q ss_pred EEEEEecCCC-CCChHHHHhccC---C-CccCCCce---------EEEeCccccCC
Q 002311 21 EKFEVSSVDP-STTLLEFLRYHT---R-FKSVKLGC---------VLVDAEKTHRP 62 (937)
Q Consensus 21 ~~~~~~~~~p-~~~Ll~~LR~~~---~-l~g~k~gC---------vl~dg~~~~~~ 62 (937)
+.+++ ++++ ++||||+||+.. . ..+.+.+| |.|||+++.+|
T Consensus 31 ~~~~v-~~~~~~~tlLd~l~~~~~~~~p~l~~~~~c~~g~Cg~C~v~i~G~~~~aC 85 (252)
T 2h88_B 31 QTYEV-DLNKCGPMVLDALIKIKNELDSTLTFRRSCREGICGSCAMNIAGGNTLAC 85 (252)
T ss_dssp EEEEE-EGGGSCSBHHHHHHHHHHHTCTTCCCCCSCSSSSSCTTEEEETTEEEEGG
T ss_pred EEEEE-ecCCCCChHHHHHHHhCcccCCCccccCCCCCCCCCCCEEEECCcEEccc
Confidence 56777 6778 999999999852 2 45788888 89999988765
No 46
>3lxf_A Ferredoxin; iron, iron-sulfur, metal-binding, metal protein; 2.30A {Novosphingobium aromaticivorans} SCOP: d.15.4.0
Probab=71.33 E-value=2.7 Score=37.93 Aligned_cols=37 Identities=22% Similarity=0.463 Sum_probs=30.5
Q ss_pred EEEEE-ECCEEEEEecCCCCCChHHHHhccCCCccCCCce
Q 002311 13 SVVFA-VNGEKFEVSSVDPSTTLLEFLRYHTRFKSVKLGC 51 (937)
Q Consensus 13 ~i~~~-~Ng~~~~~~~~~p~~~Ll~~LR~~~~l~g~k~gC 51 (937)
+|+|. .||+.+++ ++.++++||+.|+++ |+.++..+|
T Consensus 2 ~vt~~~~~G~~~~~-~~~~g~tll~a~~~~-gi~~i~~~C 39 (104)
T 3lxf_A 2 AILVTTRDGTRTEI-QAEPGLSLMEALRDA-GIDELLALC 39 (104)
T ss_dssp EEEEECTTSCEEEE-ECCTTSBHHHHHHHT-TCTTCCCTT
T ss_pred EEEEEeCCCCEEEE-EECCCChHHHHHHHc-CCCCCCcCC
Confidence 46665 68999999 699999999999975 887677777
No 47
>1vlb_A Aldehyde oxidoreductase; iron-sulphur cluster; HET: PCD; 1.28A {Desulfovibrio gigas} SCOP: a.56.1.1 d.15.4.2 d.41.1.1 d.133.1.1 PDB: 1sij_A* 1zcs_A* 3fah_A* 3fc4_A* 3l4p_A*
Probab=71.17 E-value=9.1 Score=47.69 Aligned_cols=60 Identities=17% Similarity=0.048 Sum_probs=47.1
Q ss_pred CCceEEEEccCCcEEEEeccccccccHHHHHHHHHHHHhcccccCCCCCCCCcEEEecCCCccccCCCCCcccchhhhh
Q 002311 609 STPGKVSILSDGSVVVEVGGIELGQGLWTKVKQMAAFALSSIQCGGMGDLLETVRVIQADTLSVIQGGLTAGSTKSEAS 687 (937)
Q Consensus 609 ~~~a~v~l~~DG~v~v~~g~~e~GqG~~T~~aqiaAe~Lgi~~~~~~~~~~~~I~v~~~dT~~~p~~~~t~aSr~t~~~ 687 (937)
+..+....++||+++|+++++. . ....+.+|+.||+ |.++|+|.. |+-+|.+|++.....
T Consensus 370 p~~~~A~~~~~g~l~v~~stQ~----p-~~~r~~lA~~Lgl--------p~~~VrV~~------~~vGGgFG~K~~~~~ 429 (907)
T 1vlb_A 370 PDVAFAYMGDDGKCYIHSKSIG----V-HLHLYMIAPGVGL--------EPDQLVLVA------NPMGGTFGYKFSPTS 429 (907)
T ss_dssp CCEEEEEECTTSCEEEEESCSC----H-HHHHHHHHHHHTC--------CGGGEEEEE------CCCSCCTTGGGSCSS
T ss_pred CCeEEEEEcCCCcEEEEECCcC----h-HHHHHHHHHHhCC--------ChhhEEEEe------CcCCCCCCCCccccH
Confidence 4667777777899999998753 3 3456788899999 999999984 556899999976654
No 48
>3hui_A Ferredoxin; cytochrome P450, electron transfer, iron, iron-sulfur, metal-binding, electron transport; 2.01A {Rhodopseudomonas palustris}
Probab=69.46 E-value=3.1 Score=39.02 Aligned_cols=38 Identities=24% Similarity=0.365 Sum_probs=30.9
Q ss_pred eEEEEE-ECCEEEEEecCCCCCChHHHHhccCCCccCCCce
Q 002311 12 HSVVFA-VNGEKFEVSSVDPSTTLLEFLRYHTRFKSVKLGC 51 (937)
Q Consensus 12 ~~i~~~-~Ng~~~~~~~~~p~~~Ll~~LR~~~~l~g~k~gC 51 (937)
.+|+|. .||+.+++ ++.++++||+.|++. |+.|....|
T Consensus 22 ~~Vt~~~~~G~~~~v-~~~~G~tLL~aa~~~-gi~gi~~~C 60 (126)
T 3hui_A 22 AKINFVDHTGETRTV-EVEEGATVMEAAIRN-AIPGVEAEC 60 (126)
T ss_dssp EEEEEECTTSCEEEE-EEETTSBHHHHHHTT-TCTTCCCTT
T ss_pred eEEEEEeCCCCEEEE-EECCCCcHHHHHHHc-CCCCCccCC
Confidence 378888 89987888 688999999999976 776666666
No 49
>1ffv_B CUTL, molybdoprotein of carbon monoxide dehydrogenase; hydrolase; HET: ARO PCD FAD; 2.25A {Hydrogenophaga pseudoflava} SCOP: d.41.1.1 d.133.1.1 PDB: 1ffu_B*
Probab=69.18 E-value=9.5 Score=46.86 Aligned_cols=58 Identities=12% Similarity=0.060 Sum_probs=45.8
Q ss_pred CCceEEEEcc-CCcEEEEeccccccccHHHHHHHHHHHHhcccccCCCCCCCCcEEEecCCCccccCCCCCcccchhh
Q 002311 609 STPGKVSILS-DGSVVVEVGGIELGQGLWTKVKQMAAFALSSIQCGGMGDLLETVRVIQADTLSVIQGGLTAGSTKSE 685 (937)
Q Consensus 609 ~~~a~v~l~~-DG~v~v~~g~~e~GqG~~T~~aqiaAe~Lgi~~~~~~~~~~~~I~v~~~dT~~~p~~~~t~aSr~t~ 685 (937)
+..+....++ ||+++|+++++. . ....+.+|+.||| |.++|+|.. |+-+|.+|++...
T Consensus 216 p~~~~A~~~~~~g~l~v~~stQ~----p-~~~r~~lA~~Lgl--------p~~~VrV~~------~~vGGgFG~K~~~ 274 (803)
T 1ffv_B 216 TCGCVASFDPIKGDLTTYITSQA----P-HVVRTVVSMLSGI--------PESKVRIVS------PDIGGGFGNKVGI 274 (803)
T ss_dssp CCEEEEEEETTTTEEEEEECCSC----H-HHHHHHHHHHHCC--------CGGGEEEEC------CCCSCCTTTTSSC
T ss_pred CceEEEEEeCCCceEEEEECCCC----H-HHHHHHHHHHhCC--------CHHHEEEEe------CCCCCCCCccccc
Confidence 4667777775 899999998753 3 3567788899999 999999984 5568999999754
No 50
>1xlq_A Putidaredoxin, PDX; [2Fe-2S], ferredoxin, oxidoreductase; 1.45A {Pseudomonas putida} SCOP: d.15.4.1 PDB: 1xlp_A 1oqr_A 1r7s_A 1pdx_A 1yji_A 1yjj_A 1oqq_A 1xln_A 1xlo_A 3lb8_C* 1put_A 1gpx_A
Probab=68.25 E-value=2.8 Score=37.75 Aligned_cols=37 Identities=19% Similarity=0.351 Sum_probs=29.4
Q ss_pred EEEE-EECCEEEEEecCCCCCChHHHHhccCCCccCCCce
Q 002311 13 SVVF-AVNGEKFEVSSVDPSTTLLEFLRYHTRFKSVKLGC 51 (937)
Q Consensus 13 ~i~~-~~Ng~~~~~~~~~p~~~Ll~~LR~~~~l~g~k~gC 51 (937)
+|+| ..||+.+++ .+.++++||+.+++. |+.|....|
T Consensus 2 ~V~~~~~~g~~~~~-~~~~g~tlLeaa~~~-gi~~i~~~C 39 (106)
T 1xlq_A 2 KVVYVSHDGTRREL-DVADGVSLMQAAVSN-GIYDIVGDC 39 (106)
T ss_dssp EEEEECTTSCEEEE-ECCTTCBHHHHHHHT-TCTTSCCTT
T ss_pred EEEEEeCCCCEEEE-EECCCCcHHHHHHHc-CCCCCCcCC
Confidence 5788 589977788 689999999999875 776566666
No 51
>3c8y_A Iron hydrogenase 1; dithiomethylether, H-cluster, iron-sulfur binding, oxidoreductase; HET: HCN; 1.39A {Clostridium pasteurianum} SCOP: c.96.1.1 d.15.4.2 d.58.1.5 PDB: 1c4c_A* 1c4a_A* 1feh_A*
Probab=67.83 E-value=3.9 Score=48.29 Aligned_cols=52 Identities=25% Similarity=0.365 Sum_probs=38.4
Q ss_pred EEEEECCEEEEEecCCCCCChHHHHhccCCCccC-----------CCce----EEEeCc-cccCCC--CCCCCC
Q 002311 14 VVFAVNGEKFEVSSVDPSTTLLEFLRYHTRFKSV-----------KLGC----VLVDAE-KTHRPE--PPPGFS 69 (937)
Q Consensus 14 i~~~~Ng~~~~~~~~~p~~~Ll~~LR~~~~l~g~-----------k~gC----vl~dg~-~~~~~~--~~pg~~ 69 (937)
|+|+|||+.+++ ++++|||+.||+. |+.-. ...| |.|||+ .+.+|. ...||.
T Consensus 2 v~~~ing~~v~v---~~g~tiL~a~~~~-gi~ip~lC~~~~~~~~~G~Cg~C~V~v~g~~~~~aC~t~v~~gm~ 71 (574)
T 3c8y_A 2 KTIIINGVQFNT---DEDTTILKFARDN-NIDISALCFLNNCNNDINKCEICTVEVEGTGLVTACDTLIEDGMI 71 (574)
T ss_dssp EEEEETTEEEEE---CCCCBHHHHHHHT-TCCCCCSSCBTTBCCSSSCCCTTEEEETTTEEEEGGGCBCCTTCE
T ss_pred eEEEECCEEEEe---CCCCHHHHHHHHc-CCCCCcccCCCCCCCCcccCCCCEEEeCCCcccccCCCCccccee
Confidence 799999998765 6899999999985 55211 2245 999999 676664 357874
No 52
>1kf6_B Fumarate reductase iron-sulfur protein; respiration, fumarate reductace, succinate dehydrogenase, CO quinol, quinone, oxidoreductase; HET: FAD HQO CE1 1PE; 2.70A {Escherichia coli} SCOP: a.1.2.1 d.15.4.2 PDB: 1kfy_B* 1l0v_B* 2b76_B* 3cir_B* 3p4p_B* 3p4q_B* 3p4r_B* 3p4s_B*
Probab=67.24 E-value=2.2 Score=44.38 Aligned_cols=41 Identities=27% Similarity=0.404 Sum_probs=31.8
Q ss_pred EEEEEecCCCCCChHHHHhccCC-----CccCCCce---------EEEeCccccCCC
Q 002311 21 EKFEVSSVDPSTTLLEFLRYHTR-----FKSVKLGC---------VLVDAEKTHRPE 63 (937)
Q Consensus 21 ~~~~~~~~~p~~~Ll~~LR~~~~-----l~g~k~gC---------vl~dg~~~~~~~ 63 (937)
+.+++ ++++++|||++||+. + ..+.+.+| |.|||+++.+|.
T Consensus 24 ~~~~~-~~~~~~tll~al~~~-~~~~~p~l~~~~~c~~G~Cg~C~v~v~G~~~~aC~ 78 (243)
T 1kf6_B 24 AFYEV-PYDATTSLLDALGYI-KDNLAPDLSYRWSCRMAICGSCGMMVNNVPKLACK 78 (243)
T ss_dssp EEEEE-EECTTCBHHHHHHHH-HHHTCTTCCCCCCCSSSSSCCCEEEETTEEEEGGG
T ss_pred EEEEE-ecCCCChHHHHHHHc-CcccCCCcccccCCCCCcCCCCEeEECCEEEeeee
Confidence 45667 688999999999974 4 23678877 899999888764
No 53
>1uwm_A Ferredoxin VI, FDVI; electron transport, metal-binding, iron-sulfur, iron, 2Fe-2S; 2.0A {Rhodobacter capsulatus} SCOP: d.15.4.1 PDB: 1e9m_A
Probab=67.02 E-value=3.3 Score=37.23 Aligned_cols=37 Identities=27% Similarity=0.558 Sum_probs=29.2
Q ss_pred EEEE-EECCEEEEEecCCCCCChHHHHhccCCCccCCCce
Q 002311 13 SVVF-AVNGEKFEVSSVDPSTTLLEFLRYHTRFKSVKLGC 51 (937)
Q Consensus 13 ~i~~-~~Ng~~~~~~~~~p~~~Ll~~LR~~~~l~g~k~gC 51 (937)
+|+| ..||+.+++ .+.++++||+.++++ |+.|+...|
T Consensus 2 ~v~~~~~~g~~~~~-~~~~g~tlL~aa~~~-gi~~i~~~C 39 (106)
T 1uwm_A 2 KIIFIEHNGTRHEV-EAKPGLTVMEAARDN-GVPGIDADC 39 (106)
T ss_dssp EEEEECTTCCEEEE-ECCTTSBHHHHHHTT-TCTTCCCTT
T ss_pred EEEEEeCCCCEEEE-EECCCCcHHHHHHHc-CCCCcccCC
Confidence 5788 578977778 689999999999875 776566666
No 54
>2w3s_B Xanthine dehydrogenase; XO, XDH, GOUT, iron, 2Fe-2S, iron-sulfur, oxidoreductase, purine metabolism, molybdenum cofactor, hypoxanthine; HET: MPN FAD XAN; 2.60A {Rhodobacter capsulatus} PDB: 1jrp_B* 2w3r_B* 1jro_B* 2w54_B* 2w55_B*
Probab=66.74 E-value=12 Score=45.81 Aligned_cols=57 Identities=21% Similarity=0.209 Sum_probs=44.9
Q ss_pred CCceEEEEccCCcEEEEeccccccccHHHHHHHHHHHHhcccccCCCCCCCCcEEEecCCCccccCCCCCcccchhh
Q 002311 609 STPGKVSILSDGSVVVEVGGIELGQGLWTKVKQMAAFALSSIQCGGMGDLLETVRVIQADTLSVIQGGLTAGSTKSE 685 (937)
Q Consensus 609 ~~~a~v~l~~DG~v~v~~g~~e~GqG~~T~~aqiaAe~Lgi~~~~~~~~~~~~I~v~~~dT~~~p~~~~t~aSr~t~ 685 (937)
+..+....+.|| ++|+++++ +. ..+.+.+|+.||| |.++|+|.. |+-+|.+|++.+.
T Consensus 178 p~~~~A~~~~~~-l~v~~stQ----~p-~~~r~~vA~~Lgl--------p~~~VrV~~------~~vGGgFG~K~~~ 234 (777)
T 2w3s_B 178 GQAALALPAEGG-VVIHCSSQ----HP-SEIQHKVAHALGL--------AFHDVRVEM------RRMGGGFGGKESQ 234 (777)
T ss_dssp CCEEEEEEETTE-EEEEESCS----CH-HHHHHHHHHHHTC--------CGGGEEEEE------CCCSCCTTTTTTT
T ss_pred CCeEEEEEECCc-cEEEECCc----CH-HHHHHHHHHHHCC--------CHHHEEEEe------CCCCCCCCcCccc
Confidence 466777777788 99999875 33 3557788999999 999999984 5568999999754
No 55
>1f0z_A THis protein; ubiquitin fold, transport protein; NMR {Escherichia coli} SCOP: d.15.3.2 PDB: 1zud_2
Probab=66.43 E-value=2.7 Score=34.46 Aligned_cols=40 Identities=13% Similarity=0.236 Sum_probs=30.2
Q ss_pred EEEECCEEEEEecCCCCCChHHHHhccCCCccCCCce-EEEeCcccc
Q 002311 15 VFAVNGEKFEVSSVDPSTTLLEFLRYHTRFKSVKLGC-VLVDAEKTH 60 (937)
Q Consensus 15 ~~~~Ng~~~~~~~~~p~~~Ll~~LR~~~~l~g~k~gC-vl~dg~~~~ 60 (937)
+++|||+.+++ ..+.||.++|+. +++. ..+| |.+||+-+.
T Consensus 2 ~i~vNg~~~~~---~~~~tv~~ll~~-l~~~--~~~v~vavN~~~v~ 42 (66)
T 1f0z_A 2 QILFNDQAMQC---AAGQTVHELLEQ-LDQR--QAGAALAINQQIVP 42 (66)
T ss_dssp CEEESSCEECC---CTTCCHHHHHHH-HTCC--CSSEEEEETTEEEC
T ss_pred EEEECCEEEEc---CCCCcHHHHHHH-cCCC--CCCEEEEECCEECC
Confidence 58999998865 467899999975 5653 4556 889998764
No 56
>1b9r_A Protein (terpredoxin); structure from molmol, ferredoxin; NMR {Pseudomonas SP} SCOP: d.15.4.1
Probab=63.81 E-value=2.7 Score=37.79 Aligned_cols=37 Identities=19% Similarity=0.384 Sum_probs=28.8
Q ss_pred EEEE-EECCEEEEEecCCCCCChHHHHhccCCCccCCCce
Q 002311 13 SVVF-AVNGEKFEVSSVDPSTTLLEFLRYHTRFKSVKLGC 51 (937)
Q Consensus 13 ~i~~-~~Ng~~~~~~~~~p~~~Ll~~LR~~~~l~g~k~gC 51 (937)
+|+| ..||+.+++ .+.++++||+.++++ |+.|....|
T Consensus 2 ~V~~~~~~g~~~~~-~~~~g~tlL~aa~~~-gi~~i~~~C 39 (105)
T 1b9r_A 2 RVVFIDEQSGEYAV-DAQDGQSLMEVATQN-GVPGIVAEC 39 (105)
T ss_dssp EEEECCTTTSCEEE-ECCTTCCTTHHHHHH-TCCCCCCSS
T ss_pred EEEEEeCCCCEEEE-EECCCChHHHHHHHc-CCCCcCcCC
Confidence 5778 578976777 588999999999875 765566666
No 57
>1ryj_A Unknown; beta/alpha protein, structural genomics, protein structure initiative, OCSP, NESG, PSI; NMR {Methanothermococcusthermolithotrophicus} SCOP: d.15.3.2
Probab=61.55 E-value=4.5 Score=33.66 Aligned_cols=43 Identities=12% Similarity=0.098 Sum_probs=30.9
Q ss_pred EEEEEECCEE----EEEecCCCCCChHHHHhccCCCccCCCce-EEEeCccccC
Q 002311 13 SVVFAVNGEK----FEVSSVDPSTTLLEFLRYHTRFKSVKLGC-VLVDAEKTHR 61 (937)
Q Consensus 13 ~i~~~~Ng~~----~~~~~~~p~~~Ll~~LR~~~~l~g~k~gC-vl~dg~~~~~ 61 (937)
.++++|||+. +++ +.+.|+.++|+. +++. ..++ |.+||+.+..
T Consensus 4 ~m~i~vNg~~~~~~~~~---~~~~tv~~Ll~~-l~~~--~~~v~vavN~~~v~~ 51 (70)
T 1ryj_A 4 GMKFTVITDDGKKILES---GAPRRIKDVLGE-LEIP--IETVVVKKNGQIVID 51 (70)
T ss_dssp CEEEEEEETTEEEEEEE---SSCCBHHHHHHH-TTCC--TTTEEEEETTEECCT
T ss_pred eEEEEEeCccCceeEEC---CCCCcHHHHHHH-hCCC--CCCEEEEECCEECCC
Confidence 3678999988 655 456899999975 5663 3445 8889987653
No 58
>3unc_A Xanthine dehydrogenase/oxidase; oxidoreductase; HET: MTE FAD SAL; 1.65A {Bos taurus} PDB: 3una_A* 3uni_A* 1v97_A* 1fo4_A* 1vdv_A* 3am9_A* 3amz_A* 3ax7_A* 3ax9_A* 3bdj_A* 1n5x_A* 2ckj_A* 2e1q_A* 3an1_A* 2e3t_A* 1wyg_A* 3b9j_B* 1fiq_B* 3b9j_A* 1fiq_A*
Probab=58.09 E-value=22 Score=46.16 Aligned_cols=91 Identities=43% Similarity=0.755 Sum_probs=80.7
Q ss_pred EEEEEECCEEEEEecCCCCCChHHHHhccCCCccCCCce---------EEEe----------CccccCC-----------
Q 002311 13 SVVFAVNGEKFEVSSVDPSTTLLEFLRYHTRFKSVKLGC---------VLVD----------AEKTHRP----------- 62 (937)
Q Consensus 13 ~i~~~~Ng~~~~~~~~~p~~~Ll~~LR~~~~l~g~k~gC---------vl~d----------g~~~~~~----------- 62 (937)
.|+|+|||+.+++.+++|+++||+|||++++|||||+|| |+|| |++|++|
T Consensus 5 ~i~~~vNg~~~~~~~~~p~~~ll~~LR~~~~ltgtk~gC~~g~CGaCtV~~~~~~~~~~~~~~~~v~sCl~~~~~~~g~~ 84 (1332)
T 3unc_A 5 ELVFFVNGKKVVEKNADPETTLLAYLRRKLGLRGTKLGCGEGGCGACTVMLSKYDRLQDKIIHFSANACLAPICTLHHVA 84 (1332)
T ss_dssp CEEEEETTEEEEETTCCTTCBHHHHHHHTSCCTTSCCSCSSSSSCTTEEEEEEEETTTTEEEEEEEETTTCBGGGCTTCE
T ss_pred cEEEEECCEEEEeecCCCCCCHHHHHhhhcCCCCcCCCcCCCCCCCcEEEEecccccccccCCeEeehHHhhHHHhCCCE
Confidence 699999999998646999999999999999999999999 8995 8888765
Q ss_pred ------------------------------CCCCCCC-----------CCCHHHHHHHHhCCcccCCCCHHHHHHHHHHh
Q 002311 63 ------------------------------EPPPGFS-----------KLTISEAEKAIAGNLCRCTGYRPIADACKSFA 101 (937)
Q Consensus 63 ------------------------------~~~pg~~-----------~p~~~ei~~~l~gnlCRCtgy~~i~~A~~~~~ 101 (937)
.|||||+ +||++||+++|+|||||||||++|++|++.++
T Consensus 85 i~TiEgl~~~~~~~hpvq~a~~~~~~~QCG~CtpG~vms~~~ll~~~~~p~~~~i~~~l~gnlCRCtgy~~i~~a~~~~~ 164 (1332)
T 3unc_A 85 VTTVEGIGSTKTRLHPVQERIAKSHGSQCGFCTPGIVMSMYTLLRNQPEPTVEEIEDAFQGNLCRCTGYRPILQGFRTFA 164 (1332)
T ss_dssp EECGGGTCCTTSCCCHHHHHHHHTTCCSSCTTHHHHHHHHHHHHHHCSSCCHHHHHHTTTTCCCSSSCSHHHHHHHGGGC
T ss_pred EEEeccccCCCCCcCHHHHHHHHhCCCCCCCCccHHHHHHHHHHHhcCCCCHHHHHHHHhCCcccCCCchhHHHHHHHHh
Confidence 2567774 69999999999999999999999999999887
Q ss_pred hh
Q 002311 102 AD 103 (937)
Q Consensus 102 ~~ 103 (937)
..
T Consensus 165 ~~ 166 (1332)
T 3unc_A 165 KN 166 (1332)
T ss_dssp --
T ss_pred hc
Confidence 65
No 59
>1i7h_A Ferredoxin; 2Fe-2S,electron transport; 1.70A {Escherichia coli} SCOP: d.15.4.1
Probab=54.91 E-value=5.6 Score=36.11 Aligned_cols=36 Identities=11% Similarity=0.276 Sum_probs=26.2
Q ss_pred EEEEEEC-C---EEEEEecCCCCCChHHHHhccCCCccCCCce
Q 002311 13 SVVFAVN-G---EKFEVSSVDPSTTLLEFLRYHTRFKSVKLGC 51 (937)
Q Consensus 13 ~i~~~~N-g---~~~~~~~~~p~~~Ll~~LR~~~~l~g~k~gC 51 (937)
+|+|+.| | ..+++ +++++++||+.|++. |+. +..+|
T Consensus 3 ~i~~~~~~g~~~~~~~~-~~~~g~tlL~a~~~~-gi~-i~~~C 42 (111)
T 1i7h_A 3 KIVILPHQDLCPDGAVL-EANSGETILDAALRN-GIE-IEHAC 42 (111)
T ss_dssp EEEECCBTTTBTTCEEE-ECCTTCBHHHHHHHT-TCC-CCCTT
T ss_pred EEEEEeCCCcCCCCeEE-EeCCCCcHHHHHHHc-CCC-CcccC
Confidence 6888883 2 33455 578999999999976 763 66666
No 60
>2cu3_A Unknown function protein; thermus thermophilus HB8, structural genomics, riken structu genomics/proteomics initiative, RSGI, NPPSFA; 1.70A {Thermus thermophilus} SCOP: d.15.3.2 PDB: 2htm_E
Probab=48.84 E-value=11 Score=30.61 Aligned_cols=38 Identities=29% Similarity=0.284 Sum_probs=28.4
Q ss_pred EEECCEEEEEecCCCCCChHHHHhccCCCccCCCce-EEEeCcccc
Q 002311 16 FAVNGEKFEVSSVDPSTTLLEFLRYHTRFKSVKLGC-VLVDAEKTH 60 (937)
Q Consensus 16 ~~~Ng~~~~~~~~~p~~~Ll~~LR~~~~l~g~k~gC-vl~dg~~~~ 60 (937)
++|||+.++ + .+.|+.++|+. +++. ...+ |.+||+-+.
T Consensus 2 i~vNg~~~~---~-~~~tv~~ll~~-l~~~--~~~v~vavN~~~v~ 40 (64)
T 2cu3_A 2 VWLNGEPRP---L-EGKTLKEVLEE-MGVE--LKGVAVLLNEEAFL 40 (64)
T ss_dssp EEETTEEEC---C-TTCCHHHHHHH-HTBC--GGGEEEEETTEEEE
T ss_pred EEECCEEEE---c-CCCcHHHHHHH-cCCC--CCcEEEEECCEECC
Confidence 689999875 4 56899999975 5654 3455 888998765
No 61
>2bt6_A Adrenodoxin 1; ruthenium(II) bipyridyl complex, intramolecular electron TRA electron transport, metal-binding; HET: RUA; 1.50A {Bos taurus} SCOP: d.15.4.1 PDB: 1ayf_A 3n9y_C* 2jqr_B* 3na0_C*
Probab=43.07 E-value=13 Score=33.32 Aligned_cols=30 Identities=20% Similarity=0.340 Sum_probs=23.7
Q ss_pred EEEEE-ECCEEEEEecCCCCCChHHHHhccCCC
Q 002311 13 SVVFA-VNGEKFEVSSVDPSTTLLEFLRYHTRF 44 (937)
Q Consensus 13 ~i~~~-~Ng~~~~~~~~~p~~~Ll~~LR~~~~l 44 (937)
+|+|. -+|+.+++ ++.++++||+.++++ |+
T Consensus 8 ~V~~~~~~g~~~~v-~~~~g~tLL~aa~~~-gi 38 (108)
T 2bt6_A 8 TVHFINRDGETLTT-KGKIGDSLLDVVVQN-NL 38 (108)
T ss_dssp EEEEECTTSCEEEE-EEETTCBHHHHHHHT-TC
T ss_pred EEEEECCCCCEEEE-EECCCChHHHHHHHc-CC
Confidence 56665 47998888 688999999999875 54
No 62
>2kwp_A Transcription elongation protein NUSA; NMR {Escherichia coli}
Probab=40.13 E-value=25 Score=33.00 Aligned_cols=28 Identities=18% Similarity=0.284 Sum_probs=23.2
Q ss_pred EEEEEECCCCcEEEEEEEEEecCCccCCcc
Q 002311 755 SEVEINLLTGETTIVQSDIIYDCGQSLNPA 784 (937)
Q Consensus 755 aeVeVD~~TG~v~V~r~~~v~D~G~vINP~ 784 (937)
++|++|+.||.++|-+.+.|+|= +-||.
T Consensus 45 ~~V~id~~tG~~~v~~~~~VVee--ved~~ 72 (129)
T 2kwp_A 45 VRVQIDRKSGDFDTFRRWLVVDE--VTQPT 72 (129)
T ss_dssp EEEEEETTTTEEEEEEEEEEETT--CSCTT
T ss_pred eEEEEECCCCeEEEEEEEEEecC--CCCCc
Confidence 58999999999999999998863 44553
No 63
>2y5c_A Adrenodoxin-like protein, mitochondrial; electron transport, iron-sulfur cluster biogenesis; 1.70A {Homo sapiens}
Probab=39.92 E-value=20 Score=32.26 Aligned_cols=36 Identities=25% Similarity=0.457 Sum_probs=26.0
Q ss_pred EEEEE-ECCEEEEEecCCCCCChHHHHhccCCCccCCCce
Q 002311 13 SVVFA-VNGEKFEVSSVDPSTTLLEFLRYHTRFKSVKLGC 51 (937)
Q Consensus 13 ~i~~~-~Ng~~~~~~~~~p~~~Ll~~LR~~~~l~g~k~gC 51 (937)
+|+|. -||+.+++ .+.++++||+.++++ |+ .....|
T Consensus 7 ~v~~~~~~g~~~~~-~~~~g~tlL~aa~~~-gi-~i~~~C 43 (109)
T 2y5c_A 7 NVVFVDRSGQRIPV-SGRVGDNVLHLAQRH-GV-DLEGAC 43 (109)
T ss_dssp EEEEECTTSCEEEE-EEETTCBHHHHHHHT-TC-CCCCTT
T ss_pred EEEEEcCCCCEEEE-EECCCCcHHHHHHHc-CC-CCCcCC
Confidence 56663 48998888 688999999999875 54 244444
No 64
>1v2y_A 3300001G02RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=28.69 E-value=28 Score=31.41 Aligned_cols=30 Identities=23% Similarity=0.360 Sum_probs=24.5
Q ss_pred ccCCeeEEEE-EECCEEEEEecCCCCCChHHH
Q 002311 7 DRGTRHSVVF-AVNGEKFEVSSVDPSTTLLEF 37 (937)
Q Consensus 7 ~~~~~~~i~~-~~Ng~~~~~~~~~p~~~Ll~~ 37 (937)
.++..|+|++ +++|+.+++ +++|+.|+.++
T Consensus 3 ~~~~~M~I~Vk~l~g~~~~v-~V~~~~TV~dL 33 (105)
T 1v2y_A 3 SGSSGMTVRVCKMDGEVMPV-VVVQNATVLDL 33 (105)
T ss_dssp CCCCSEEEEEECSSSCEEEE-EECTTCBHHHH
T ss_pred CCCCcEEEEEEecCCCEEEE-EECCCChHHHH
Confidence 3455688888 789999999 79999997764
No 65
>1n91_A ORF, hypothetical protein; alpha+beta, northeast structural genomics consortium, PSI, P structure initiative, NESG; NMR {Escherichia coli} SCOP: d.206.1.1 PDB: 1yh5_A
Probab=28.11 E-value=65 Score=29.23 Aligned_cols=46 Identities=7% Similarity=-0.003 Sum_probs=40.9
Q ss_pred cCCcEEEEeccccccccHHHHHHHHHHHHhcccccCCCCCCCCcEEEecCCCcc
Q 002311 618 SDGSVVVEVGGIELGQGLWTKVKQMAAFALSSIQCGGMGDLLETVRVIQADTLS 671 (937)
Q Consensus 618 ~DG~v~v~~g~~e~GqG~~T~~aqiaAe~Lgi~~~~~~~~~~~~I~v~~~dT~~ 671 (937)
.++.+.|...+.+..--.+..+....|+.||+ |..+|+++.|.|+.
T Consensus 34 ~~~~LkV~v~ApP~dGkAN~ali~~LAk~l~V--------~ks~V~Iv~G~tSR 79 (108)
T 1n91_A 34 HGDEVKVAITAPPVDGQANSHLVKFLGKQFRV--------AKSQVVIEKGELGR 79 (108)
T ss_dssp CSSCEEEECCCCSSHHHHHHHHHHHHHHHTCC--------CTTTEEESSCTTSS
T ss_pred cCCEEEEEEecCCCCChHHHHHHHHHHHHhCC--------ccceEEEEecCCCC
Confidence 46899999999988777899999999999999 99999999998753
No 66
>3abf_A 4-oxalocrotonate tautomerase; isomerase; 1.94A {Thermus thermophilus}
Probab=27.03 E-value=32 Score=27.14 Aligned_cols=31 Identities=35% Similarity=0.412 Sum_probs=24.4
Q ss_pred HHHHHHHHhCCCCCcEEEEeccCCC---CCCCCC
Q 002311 367 AHATIARCLGIPEHNVRVITRRVGG---GFGGKA 397 (937)
Q Consensus 367 ~r~~lA~~Lglp~~kVrV~~~~vGG---gFG~K~ 397 (937)
+-+.+++.||+|++.|.|.-..+-. ||||+.
T Consensus 24 lt~~l~~~lg~~~~~v~V~i~e~~~~~w~~gG~~ 57 (64)
T 3abf_A 24 LTEMASRLLGEPYEEVRVILYEVRRDQWAAGGVL 57 (64)
T ss_dssp HHHHHHHHTTCCGGGEEEEEEEECGGGEEETTEE
T ss_pred HHHHHHHHhCCCcccEEEEEEEcCHHHeeECCEE
Confidence 3456788899999999998877765 788874
No 67
>3i9v_3 NADH-quinone oxidoreductase subunit 3; electron transport, respiratory chain, cell flavoprotein, FMN, iron, iron-sulfur, membrane; HET: FMN; 3.10A {Thermus thermophilus} PDB: 2ybb_3* 2fug_3* 3iam_3* 3ias_3* 3m9s_3*
Probab=26.08 E-value=65 Score=39.31 Aligned_cols=25 Identities=28% Similarity=0.344 Sum_probs=21.5
Q ss_pred EEEEECCEEEEEecCCCCCChHHHHhcc
Q 002311 14 VVFAVNGEKFEVSSVDPSTTLLEFLRYH 41 (937)
Q Consensus 14 i~~~~Ng~~~~~~~~~p~~~Ll~~LR~~ 41 (937)
++|+|||+.+++ .+++|||+.++..
T Consensus 2 v~i~idg~~~~v---~~g~til~a~~~~ 26 (783)
T 3i9v_3 2 VRVKVNDRIVEV---PPGTSVMDAVFHA 26 (783)
T ss_dssp EEEECSSCEEEE---CTTCBHHHHHHHT
T ss_pred eEEEECCEEEEe---CCCChHHHHHHHh
Confidence 789999998765 5899999999864
No 68
>2kmm_A Guanosine-3',5'-BIS(diphosphate) 3'- pyrophosphohydrolase; methods development, TGS domain, predominantly beta-sheet structure; NMR {Porphyromonas gingivalis}
Probab=25.98 E-value=26 Score=28.67 Aligned_cols=44 Identities=18% Similarity=0.186 Sum_probs=28.9
Q ss_pred eEEEEEE-CCEEEEEecCCCCCChHHHHhccCCCccCCCce--EEEeCcccc
Q 002311 12 HSVVFAV-NGEKFEVSSVDPSTTLLEFLRYHTRFKSVKLGC--VLVDAEKTH 60 (937)
Q Consensus 12 ~~i~~~~-Ng~~~~~~~~~p~~~Ll~~LR~~~~l~g~k~gC--vl~dg~~~~ 60 (937)
|.|.+++ ||+.+++ +.+.|+++++.. ++. +...-| +.+||+.+.
T Consensus 1 m~i~i~~p~g~~~~~---~~g~T~~dla~~-i~~-~l~~~~vaa~vNg~lvd 47 (73)
T 2kmm_A 1 MEVMVFTPKGEIKRL---PQGATALDFAYS-LHS-DLGDHCIGAKVNHKLVP 47 (73)
T ss_dssp CCEEEECTTCCEEEE---CTTCBHHHHHHH-HCS-HHHHTEEEEEETTEECC
T ss_pred CeEEEEcCCCCEEEc---CCCCcHHHHHHH-Hhh-ccccceEEEEECCEEeC
Confidence 4567777 8988766 468999999975 332 222223 577887654
No 69
>2jv8_A Uncharacterized protein NE1242; solution structure, NESG, structural genomics, unknown function, PSI-2; NMR {Nitrosomonas europaea atcc 19718}
Probab=25.01 E-value=44 Score=26.35 Aligned_cols=38 Identities=24% Similarity=0.458 Sum_probs=25.9
Q ss_pred EEEEECCEEEEEe-cC------------CCCCChHHH----HhccCCCccCCCce
Q 002311 14 VVFAVNGEKFEVS-SV------------DPSTTLLEF----LRYHTRFKSVKLGC 51 (937)
Q Consensus 14 i~~~~Ng~~~~~~-~~------------~p~~~Ll~~----LR~~~~l~g~k~gC 51 (937)
-+++|||+++..- ++ ..-.+|||. +|+...+.|+|+|.
T Consensus 19 tsltingkeisyvhdavknkwssrylpytqydslldlaraiirdtvefsgvkegs 73 (73)
T 2jv8_A 19 TSLTINGKEISYVHDAVKNKWSSRYLPYTQYDSLLDLARAIIRDTVEFSGVKEGS 73 (73)
T ss_dssp EEEEETTEECCCCCCSSSCCCCCTTSTTCCCSCHHHHHHHHHHHCGGGTCSCSCC
T ss_pred ceeEECCEEeehHHHHHhcccccccCCchhhHHHHHHHHHHHhhceeecccccCC
Confidence 4799999998741 11 112467774 66777889999883
No 70
>1v86_A DNA segment, CHR 7, wayne state university 128, expressed; ubiquitin fold, structural genomics, D7WSU128E protein; HET: DNA; NMR {Mus musculus} SCOP: d.15.1.1
Probab=20.23 E-value=1e+02 Score=26.78 Aligned_cols=37 Identities=16% Similarity=0.046 Sum_probs=27.3
Q ss_pred CCeeEEEEEECCEEEEEecCCCCCChHHHHhccCCCcc
Q 002311 9 GTRHSVVFAVNGEKFEVSSVDPSTTLLEFLRYHTRFKS 46 (937)
Q Consensus 9 ~~~~~i~~~~Ng~~~~~~~~~p~~~Ll~~LR~~~~l~g 46 (937)
.+.+.|++..+|+.+.+ +++++.|+.++-..-...+|
T Consensus 15 ~~~~~i~Vk~~g~~~~i-~v~~~~TV~~LK~~I~~~tg 51 (95)
T 1v86_A 15 KELVDLKIIWNKTKHDV-KVPLDSTGSELKQKIHSITG 51 (95)
T ss_dssp CCCEEEEEEETTEEEEE-EECTTSBHHHHHHHHHHHHC
T ss_pred CceEEEEEEECCEEEEE-EECCCCcHHHHHHHHHHHHC
Confidence 35678888889999999 79999998886654333333
Done!