Query 002312
Match_columns 937
No_of_seqs 470 out of 1904
Neff 4.9
Searched_HMMs 46136
Date Thu Mar 28 21:15:39 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002312.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/002312hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG1246 ArgA N-acetylglutamate 99.2 4E-11 8.7E-16 119.6 6.7 91 801-895 38-129 (153)
2 KOG1244 Predicted transcriptio 99.1 7.1E-12 1.5E-16 132.8 0.6 105 542-705 220-329 (336)
3 PRK10314 putative acyltransfer 99.1 6.5E-10 1.4E-14 110.7 10.1 81 809-890 52-135 (153)
4 PF13508 Acetyltransf_7: Acety 99.0 2E-09 4.3E-14 94.5 11.1 77 805-886 3-79 (79)
5 KOG0956 PHD finger protein AF1 99.0 1.2E-10 2.7E-15 135.1 3.7 142 567-714 19-187 (900)
6 PF00583 Acetyltransf_1: Acety 99.0 2.9E-09 6.2E-14 92.6 10.1 74 811-885 2-83 (83)
7 PF13673 Acetyltransf_10: Acet 98.9 8.3E-09 1.8E-13 95.2 10.7 74 805-884 44-117 (117)
8 KOG4323 Polycomb-like PHD Zn-f 98.9 1.4E-09 3E-14 124.3 5.4 211 544-776 81-301 (464)
9 KOG1512 PHD Zn-finger protein 98.8 8E-10 1.7E-14 118.0 1.2 81 566-704 275-360 (381)
10 PTZ00330 acetyltransferase; Pr 98.8 3.8E-08 8.2E-13 94.5 10.8 83 806-889 53-141 (147)
11 PRK10146 aminoalkylphosphonic 98.8 3.1E-08 6.6E-13 94.9 9.1 80 808-888 50-137 (144)
12 PLN02706 glucosamine 6-phospha 98.7 5.8E-08 1.3E-12 94.3 10.6 82 806-888 54-143 (150)
13 PF15446 zf-PHD-like: PHD/FYVE 98.7 9.8E-09 2.1E-13 103.4 5.1 133 548-686 1-143 (175)
14 cd02169 Citrate_lyase_ligase C 98.7 4.6E-08 9.9E-13 108.0 9.7 74 809-888 10-83 (297)
15 PLN02825 amino-acid N-acetyltr 98.7 7E-08 1.5E-12 113.3 11.6 104 808-915 410-514 (515)
16 PRK07922 N-acetylglutamate syn 98.7 7.4E-08 1.6E-12 97.4 10.0 79 808-889 48-127 (169)
17 PRK07757 acetyltransferase; Pr 98.7 7.7E-08 1.7E-12 93.6 9.7 81 809-892 45-125 (152)
18 PF13527 Acetyltransf_9: Acety 98.7 1.4E-07 3E-12 88.8 11.1 111 764-887 10-127 (127)
19 KOG0825 PHD Zn-finger protein 98.6 8.2E-09 1.8E-13 121.4 2.0 55 643-708 212-267 (1134)
20 PRK03624 putative acetyltransf 98.6 9.6E-08 2.1E-12 89.6 8.9 83 806-890 46-131 (140)
21 TIGR01890 N-Ac-Glu-synth amino 98.6 2.1E-07 4.6E-12 107.1 11.2 85 809-895 326-411 (429)
22 COG5141 PHD zinc finger-contai 98.6 1.5E-08 3.2E-13 114.7 1.3 126 544-690 191-341 (669)
23 TIGR01575 rimI ribosomal-prote 98.5 4.1E-07 8.8E-12 84.6 10.0 80 808-889 34-116 (131)
24 TIGR00124 cit_ly_ligase [citra 98.5 2.5E-07 5.5E-12 103.6 9.9 80 805-890 31-110 (332)
25 PRK10975 TDP-fucosamine acetyl 98.5 3.7E-07 8.1E-12 93.4 10.2 84 805-889 102-188 (194)
26 TIGR02382 wecD_rffC TDP-D-fuco 98.5 4E-07 8.7E-12 93.1 10.2 80 809-889 103-185 (191)
27 KOG0954 PHD finger protein [Ge 98.5 5.5E-08 1.2E-12 114.5 4.0 154 540-709 265-441 (893)
28 KOG0955 PHD finger protein BR1 98.5 6E-08 1.3E-12 120.2 4.2 127 544-687 217-365 (1051)
29 COG2153 ElaA Predicted acyltra 98.5 2.8E-07 6.1E-12 91.4 7.8 84 807-891 52-138 (155)
30 PRK05279 N-acetylglutamate syn 98.5 4.4E-07 9.6E-12 104.8 10.6 85 808-894 337-422 (441)
31 PRK09491 rimI ribosomal-protei 98.5 1E-06 2.2E-11 85.4 11.0 84 804-889 39-125 (146)
32 PRK12308 bifunctional arginino 98.5 4.9E-07 1.1E-11 108.7 10.1 82 808-892 506-587 (614)
33 KOG4299 PHD Zn-finger protein 98.4 1.4E-07 3E-12 110.4 4.5 59 536-603 241-305 (613)
34 TIGR03827 GNAT_ablB putative b 98.4 7.1E-07 1.5E-11 96.4 9.6 84 805-889 158-245 (266)
35 PRK13688 hypothetical protein; 98.4 1.3E-06 2.9E-11 88.0 9.4 75 810-890 50-134 (156)
36 PRK10140 putative acetyltransf 98.4 2.1E-06 4.6E-11 83.4 10.3 85 805-891 51-143 (162)
37 KOG0383 Predicted helicase [Ge 98.4 1.8E-07 3.8E-12 112.4 3.0 156 575-772 1-163 (696)
38 PRK09831 putative acyltransfer 98.3 1.4E-06 3.1E-11 85.0 8.3 73 808-891 56-128 (147)
39 KOG4299 PHD Zn-finger protein 98.3 3.1E-07 6.8E-12 107.5 4.2 50 648-706 255-304 (613)
40 PHA00673 acetyltransferase dom 98.3 3.5E-06 7.6E-11 85.1 10.7 84 805-889 55-146 (154)
41 KOG4443 Putative transcription 98.3 3.3E-07 7.2E-12 107.5 2.2 79 566-700 31-112 (694)
42 TIGR03448 mycothiol_MshD mycot 98.2 6.7E-06 1.4E-10 88.8 11.0 81 806-889 47-128 (292)
43 KOG3396 Glucosamine-phosphate 98.2 4.1E-06 8.8E-11 82.4 7.5 83 805-888 53-143 (150)
44 TIGR03448 mycothiol_MshD mycot 98.2 6.5E-06 1.4E-10 88.9 9.9 86 803-889 198-288 (292)
45 KOG3139 N-acetyltransferase [G 98.2 9.8E-06 2.1E-10 81.9 10.2 73 816-889 68-146 (165)
46 TIGR02406 ectoine_EctA L-2,4-d 98.1 1E-05 2.3E-10 80.6 9.2 83 806-889 40-128 (157)
47 COG0456 RimI Acetyltransferase 98.1 1.4E-05 3E-10 79.1 9.4 76 815-891 72-156 (177)
48 TIGR03103 trio_acet_GNAT GNAT- 98.1 1.3E-05 2.8E-10 95.5 10.5 85 804-889 122-217 (547)
49 PF13420 Acetyltransf_4: Acety 98.1 3.2E-05 6.9E-10 75.2 11.0 81 807-889 52-139 (155)
50 cd04301 NAT_SF N-Acyltransfera 98.0 2.1E-05 4.5E-10 62.5 7.9 61 808-868 2-64 (65)
51 PF08445 FR47: FR47-like prote 98.0 2.2E-05 4.9E-10 71.5 8.7 75 813-889 6-82 (86)
52 PHA01807 hypothetical protein 98.0 1.5E-05 3.2E-10 80.4 8.1 81 806-889 54-141 (153)
53 PRK01346 hypothetical protein; 98.0 2.2E-05 4.9E-10 89.4 10.1 80 807-889 49-136 (411)
54 PRK10562 putative acetyltransf 97.9 3.3E-05 7.2E-10 75.0 8.9 76 808-890 51-126 (145)
55 PRK15130 spermidine N1-acetylt 97.9 5E-05 1.1E-09 76.7 10.3 82 806-889 58-145 (186)
56 PRK10514 putative acetyltransf 97.9 4E-05 8.8E-10 73.8 9.1 73 811-891 56-128 (145)
57 PF13523 Acetyltransf_8: Acety 97.9 7.5E-05 1.6E-09 72.9 10.5 86 803-889 46-141 (152)
58 PF00628 PHD: PHD-finger; Int 97.9 2.2E-06 4.7E-11 70.3 -0.3 48 649-705 2-49 (51)
59 TIGR01686 FkbH FkbH-like domai 97.9 4.8E-05 1E-09 84.6 9.7 82 804-887 230-319 (320)
60 TIGR01211 ELP3 histone acetylt 97.9 4.9E-05 1.1E-09 90.1 9.7 77 812-889 421-516 (522)
61 smart00249 PHD PHD zinc finger 97.8 1.6E-05 3.6E-10 62.4 3.5 46 649-704 2-47 (47)
62 TIGR03585 PseH pseudaminic aci 97.8 0.00014 3.1E-09 70.6 10.5 81 808-891 54-140 (156)
63 PF13718 GNAT_acetyltr_2: GNAT 97.8 0.00014 3.1E-09 76.3 10.9 88 801-889 23-176 (196)
64 COG3393 Predicted acetyltransf 97.8 7E-05 1.5E-09 81.1 8.7 84 805-889 177-262 (268)
65 KOG0383 Predicted helicase [Ge 97.8 1.4E-05 3.1E-10 96.4 3.5 51 542-604 43-95 (696)
66 KOG1512 PHD Zn-finger protein 97.8 9.9E-06 2.1E-10 87.4 1.9 53 541-602 309-362 (381)
67 PF00628 PHD: PHD-finger; Int 97.7 1.3E-05 2.9E-10 65.6 2.0 46 548-602 1-50 (51)
68 KOG1244 Predicted transcriptio 97.7 1.3E-05 2.8E-10 86.1 1.7 51 545-604 280-332 (336)
69 COG3153 Predicted acetyltransf 97.7 0.0001 2.2E-09 75.8 7.7 138 760-917 10-152 (171)
70 PRK10809 ribosomal-protein-S5- 97.6 0.00024 5.2E-09 72.4 9.7 83 805-889 77-166 (194)
71 smart00249 PHD PHD zinc finger 97.6 6.5E-05 1.4E-09 59.0 3.3 44 548-600 1-47 (47)
72 PF13302 Acetyltransf_3: Acety 97.5 0.00083 1.8E-08 63.8 11.2 80 804-885 55-142 (142)
73 PRK10151 ribosomal-protein-L7/ 97.5 0.00058 1.2E-08 68.6 10.5 81 808-890 70-156 (179)
74 KOG3397 Acetyltransferases [Ge 97.5 0.00015 3.3E-09 74.1 6.1 77 813-891 65-143 (225)
75 COG5034 TNG2 Chromatin remodel 97.5 9.4E-05 2E-09 79.3 4.8 51 541-602 216-269 (271)
76 KOG1973 Chromatin remodeling p 97.4 6.3E-05 1.4E-09 82.6 2.4 49 544-603 217-268 (274)
77 COG1247 Sortase and related ac 97.3 0.001 2.2E-08 68.5 9.1 115 797-917 44-166 (169)
78 COG5034 TNG2 Chromatin remodel 97.3 0.00011 2.4E-09 78.7 1.8 49 643-706 218-269 (271)
79 KOG1473 Nucleosome remodeling 97.2 6.1E-05 1.3E-09 92.8 -0.4 126 544-708 342-480 (1414)
80 KOG1973 Chromatin remodeling p 97.2 0.0001 2.2E-09 80.9 1.3 36 664-706 229-267 (274)
81 KOG4443 Putative transcription 97.1 0.00019 4.1E-09 85.1 2.0 139 537-705 59-200 (694)
82 KOG0957 PHD finger protein [Ge 97.1 0.00022 4.8E-09 81.9 1.6 128 548-687 121-277 (707)
83 KOG3216 Diamine acetyltransfer 97.0 0.008 1.7E-07 60.9 11.8 124 758-889 14-146 (163)
84 KOG0825 PHD Zn-finger protein 97.0 0.00025 5.5E-09 84.8 1.5 48 545-601 214-264 (1134)
85 PF13831 PHD_2: PHD-finger; PD 96.7 0.00043 9.3E-09 54.0 -0.1 34 568-601 2-36 (36)
86 KOG0957 PHD finger protein [Ge 96.6 0.00074 1.6E-08 77.8 1.6 58 647-715 545-608 (707)
87 cd04718 BAH_plant_2 BAH, or Br 96.5 0.0013 2.7E-08 66.3 2.0 27 676-707 1-27 (148)
88 PF12746 GNAT_acetyltran: GNAT 96.5 0.015 3.3E-07 63.9 10.4 77 811-889 171-247 (265)
89 COG1444 Predicted P-loop ATPas 96.4 0.011 2.3E-07 72.8 9.3 58 830-889 532-591 (758)
90 PF08444 Gly_acyl_tr_C: Aralky 96.3 0.0066 1.4E-07 56.5 5.5 75 809-888 3-79 (89)
91 PF14542 Acetyltransf_CG: GCN5 96.3 0.02 4.4E-07 51.6 8.1 59 808-867 2-60 (78)
92 PF12568 DUF3749: Acetyltransf 96.2 0.033 7.1E-07 55.1 10.0 80 805-889 40-125 (128)
93 COG3053 CitC Citrate lyase syn 96.2 0.017 3.8E-07 63.7 8.7 79 805-889 37-115 (352)
94 COG0454 WecD Histone acetyltra 96.2 0.0062 1.3E-07 51.1 4.3 44 835-884 87-130 (156)
95 KOG0955 PHD finger protein BR1 96.2 0.003 6.5E-08 79.7 3.2 57 644-711 217-273 (1051)
96 COG1670 RimL Acetyltransferase 96.1 0.038 8.3E-07 54.1 9.8 87 803-891 64-160 (187)
97 KOG4144 Arylalkylamine N-acety 96.0 0.0053 1.1E-07 62.2 3.5 61 828-889 100-161 (190)
98 cd04718 BAH_plant_2 BAH, or Br 96.0 0.0033 7.2E-08 63.3 1.9 25 579-603 1-27 (148)
99 KOG2488 Acetyltransferase (GNA 95.9 0.024 5.2E-07 59.3 7.8 84 805-889 93-182 (202)
100 KOG0956 PHD finger protein AF1 95.9 0.0034 7.3E-08 74.9 1.8 51 645-706 4-56 (900)
101 COG2388 Predicted acetyltransf 95.9 0.019 4.1E-07 54.5 6.4 62 803-866 15-76 (99)
102 KOG1245 Chromatin remodeling c 95.9 0.0021 4.6E-08 83.6 -0.1 60 644-714 1106-1165(1404)
103 KOG1245 Chromatin remodeling c 94.7 0.0075 1.6E-07 78.7 -0.5 51 544-603 1106-1158(1404)
104 KOG3138 Predicted N-acetyltran 94.6 0.031 6.7E-07 58.6 3.7 62 829-891 89-154 (187)
105 KOG0954 PHD finger protein [Ge 94.3 0.018 3.8E-07 69.6 1.4 51 645-706 270-320 (893)
106 PF13480 Acetyltransf_6: Acety 94.2 0.34 7.4E-06 45.8 9.6 66 805-871 71-136 (142)
107 KOG4323 Polycomb-like PHD Zn-f 93.9 0.028 6.2E-07 65.6 2.0 50 547-603 169-224 (464)
108 COG5141 PHD zinc finger-contai 93.8 0.025 5.3E-07 65.7 1.1 47 647-704 194-240 (669)
109 COG4552 Eis Predicted acetyltr 93.7 0.081 1.7E-06 60.0 5.0 86 799-889 35-127 (389)
110 TIGR03694 exosort_acyl putativ 93.4 0.41 9E-06 51.9 9.7 120 762-886 17-195 (241)
111 KOG3235 Subunit of the major N 92.8 0.3 6.5E-06 50.1 7.0 81 809-889 45-135 (193)
112 COG1243 ELP3 Histone acetyltra 92.7 0.089 1.9E-06 61.4 3.5 51 838-889 459-509 (515)
113 KOG3234 Acetyltransferase, (GN 92.7 0.15 3.2E-06 52.2 4.7 58 829-887 69-129 (173)
114 PF06852 DUF1248: Protein of u 92.2 0.76 1.6E-05 48.2 9.3 84 805-889 47-137 (181)
115 smart00258 SAND SAND domain. 92.0 0.13 2.9E-06 46.3 3.0 50 260-311 19-69 (73)
116 PF13831 PHD_2: PHD-finger; PD 90.9 0.026 5.6E-07 44.2 -2.3 33 665-704 2-35 (36)
117 PF01342 SAND: SAND domain; I 90.4 0.1 2.3E-06 47.9 0.8 55 255-311 18-78 (82)
118 PF00765 Autoind_synth: Autoin 89.4 2 4.4E-05 44.9 9.4 82 803-886 44-152 (182)
119 PRK13834 putative autoinducer 89.2 2.3 5E-05 45.3 9.7 118 762-886 16-162 (207)
120 COG3981 Predicted acetyltransf 88.8 0.77 1.7E-05 47.7 5.6 67 805-873 70-141 (174)
121 PF12861 zf-Apc11: Anaphase-pr 88.2 0.24 5.1E-06 46.0 1.3 59 544-604 19-81 (85)
122 PF12678 zf-rbx1: RING-H2 zinc 87.9 0.13 2.9E-06 45.9 -0.4 54 546-601 19-73 (73)
123 PF07897 DUF1675: Protein of u 86.0 1.1 2.5E-05 49.9 5.3 68 226-297 209-283 (284)
124 cd04264 DUF619-NAGS DUF619 dom 85.2 2 4.2E-05 41.0 5.8 48 811-858 14-63 (99)
125 PF13639 zf-RING_2: Ring finge 84.1 0.1 2.2E-06 41.7 -2.9 44 547-601 1-44 (44)
126 PF07227 DUF1423: Protein of u 80.5 1.8 3.8E-05 50.9 4.2 55 649-707 131-192 (446)
127 PF14446 Prok-RING_1: Prokaryo 80.0 1.2 2.6E-05 38.2 2.0 34 545-586 4-37 (54)
128 PF02474 NodA: Nodulation prot 79.8 2.8 6.1E-05 43.8 4.9 51 829-880 85-135 (196)
129 TIGR03019 pepcterm_femAB FemAB 79.3 5.8 0.00012 44.5 7.7 81 807-888 197-280 (330)
130 cd04265 DUF619-NAGS-U DUF619 d 75.5 5.8 0.00012 37.9 5.4 48 811-858 15-63 (99)
131 PF11793 FANCL_C: FANCL C-term 75.4 1.9 4.1E-05 38.4 2.0 52 547-604 3-65 (70)
132 KOG1473 Nucleosome remodeling 73.1 1.8 3.9E-05 55.3 1.7 45 647-705 345-389 (1414)
133 KOG2535 RNA polymerase II elon 72.1 5.2 0.00011 45.7 4.8 65 821-889 481-547 (554)
134 KOG4628 Predicted E3 ubiquitin 68.5 3.7 8E-05 47.1 2.8 46 547-604 230-277 (348)
135 KOG2752 Uncharacterized conser 64.8 5.7 0.00012 44.8 3.2 103 566-685 64-167 (345)
136 PF15446 zf-PHD-like: PHD/FYVE 62.5 4.1 8.9E-05 42.3 1.5 35 649-686 2-36 (175)
137 KOG4135 Predicted phosphogluco 62.1 17 0.00037 37.4 5.7 58 829-887 107-168 (185)
138 PF01233 NMT: Myristoyl-CoA:pr 61.3 66 0.0014 33.6 9.8 111 744-865 22-146 (162)
139 PF01853 MOZ_SAS: MOZ/SAS fami 61.1 35 0.00075 36.4 8.0 86 762-862 26-113 (188)
140 COG3818 Predicted acetyltransf 60.8 25 0.00055 35.5 6.5 58 836-893 91-152 (167)
141 PF13832 zf-HC5HC2H_2: PHD-zin 59.8 3.6 7.8E-05 38.9 0.6 32 647-686 56-89 (110)
142 PF14446 Prok-RING_1: Prokaryo 58.3 6.7 0.00015 33.7 1.9 35 647-686 6-40 (54)
143 PRK00756 acyltransferase NodA; 58.3 16 0.00035 38.2 4.9 39 828-867 84-122 (196)
144 PF13771 zf-HC5HC2H: PHD-like 57.9 3.4 7.4E-05 37.5 0.1 32 647-686 37-70 (90)
145 PF13880 Acetyltransf_13: ESCO 55.0 9.3 0.0002 34.5 2.3 26 832-857 8-33 (70)
146 COG5628 Predicted acetyltransf 54.6 39 0.00084 33.8 6.6 73 807-884 39-118 (143)
147 KOG1734 Predicted RING-contain 54.2 3.2 7E-05 45.9 -0.9 56 544-604 222-280 (328)
148 PHA02929 N1R/p28-like protein; 53.8 5.2 0.00011 43.8 0.6 54 545-604 173-226 (238)
149 PF13444 Acetyltransf_5: Acety 53.3 27 0.00059 32.6 5.3 25 827-851 76-100 (101)
150 PF14569 zf-UDP: Zinc-binding 52.3 3.3 7.1E-05 38.0 -1.0 58 543-606 6-63 (80)
151 PF04377 ATE_C: Arginine-tRNA- 52.0 60 0.0013 32.5 7.6 61 806-867 40-100 (128)
152 KOG1428 Inhibitor of type V ad 51.6 2.7 5.8E-05 54.8 -2.2 31 575-605 3506-3544(3738)
153 KOG1701 Focal adhesion adaptor 50.4 3.6 7.7E-05 48.1 -1.3 35 648-684 396-430 (468)
154 COG5194 APC11 Component of SCF 50.0 4.7 0.0001 37.2 -0.4 56 547-604 21-80 (88)
155 PLN03238 probable histone acet 48.8 36 0.00077 38.4 6.1 33 830-862 156-188 (290)
156 PTZ00064 histone acetyltransfe 47.2 22 0.00048 42.7 4.4 84 762-862 330-417 (552)
157 PF12261 T_hemolysin: Thermost 47.2 34 0.00073 36.1 5.3 63 828-895 86-150 (179)
158 PF10497 zf-4CXXC_R1: Zinc-fin 46.5 9.2 0.0002 36.9 1.0 49 544-602 5-69 (105)
159 PF04958 AstA: Arginine N-succ 46.2 35 0.00075 39.5 5.6 107 758-885 30-184 (342)
160 cd00162 RING RING-finger (Real 45.7 6.4 0.00014 29.9 -0.2 30 571-602 13-43 (45)
161 PLN03239 histone acetyltransfe 45.7 29 0.00064 40.1 4.9 32 831-862 215-246 (351)
162 KOG2747 Histone acetyltransfer 45.5 19 0.00041 42.2 3.4 75 761-853 207-284 (396)
163 TIGR03244 arg_catab_AstA argin 45.2 37 0.00079 39.2 5.6 49 804-852 54-140 (336)
164 PLN02400 cellulose synthase 44.7 19 0.00041 46.9 3.5 60 543-608 33-92 (1085)
165 TIGR03243 arg_catab_AOST argin 43.5 38 0.00083 39.0 5.4 49 804-852 54-140 (335)
166 COG3916 LasI N-acyl-L-homoseri 43.0 1.2E+02 0.0025 33.0 8.5 82 803-885 51-159 (209)
167 PRK10456 arginine succinyltran 42.8 37 0.00081 39.2 5.2 49 804-852 56-142 (344)
168 PRK14852 hypothetical protein; 42.1 75 0.0016 41.5 8.2 83 807-889 77-181 (989)
169 PLN02638 cellulose synthase A 41.7 17 0.00037 47.2 2.5 59 543-607 14-72 (1079)
170 KOG2779 N-myristoyl transferas 41.5 85 0.0018 36.6 7.6 127 745-882 80-226 (421)
171 KOG1246 DNA-binding protein ju 41.4 20 0.00042 46.3 3.1 48 648-707 157-204 (904)
172 PF13901 DUF4206: Domain of un 41.2 22 0.00048 37.8 2.9 34 649-683 155-188 (202)
173 PF13832 zf-HC5HC2H_2: PHD-zin 40.9 14 0.00031 34.9 1.3 31 545-586 54-86 (110)
174 TIGR03245 arg_AOST_alph argini 40.7 51 0.0011 38.0 5.9 49 804-852 55-141 (336)
175 PF02591 DUF164: Putative zinc 40.4 9.8 0.00021 32.2 0.1 34 545-578 21-54 (56)
176 PLN02436 cellulose synthase A 40.2 22 0.00047 46.3 3.1 60 543-608 33-92 (1094)
177 PLN00104 MYST -like histone ac 40.0 31 0.00067 41.1 4.1 79 762-857 252-334 (450)
178 COG0143 MetG Methionyl-tRNA sy 36.7 40 0.00086 41.4 4.5 30 647-684 143-172 (558)
179 PLN02189 cellulose synthase 36.2 26 0.00056 45.5 2.9 58 544-607 32-89 (1040)
180 KOG2036 Predicted P-loop ATPas 36.0 30 0.00064 43.3 3.2 29 830-858 615-643 (1011)
181 PRK01305 arginyl-tRNA-protein 35.8 1.8E+02 0.0039 32.2 8.9 56 811-867 150-205 (240)
182 KOG1493 Anaphase-promoting com 35.8 5.7 0.00012 36.4 -2.1 59 546-605 20-81 (84)
183 PF13901 DUF4206: Domain of un 35.8 32 0.0007 36.6 3.1 47 543-602 149-197 (202)
184 KOG0804 Cytoplasmic Zn-finger 35.6 16 0.00034 43.3 0.8 46 545-602 174-219 (493)
185 PF11793 FANCL_C: FANCL C-term 35.6 16 0.00036 32.5 0.8 35 648-685 4-40 (70)
186 KOG0827 Predicted E3 ubiquitin 35.1 8.8 0.00019 44.5 -1.2 47 547-603 5-54 (465)
187 KOG1246 DNA-binding protein ju 35.0 26 0.00057 45.2 2.7 49 545-603 154-204 (904)
188 KOG1298 Squalene monooxygenase 33.6 33 0.00071 40.4 2.9 186 21-246 97-319 (509)
189 PF10497 zf-4CXXC_R1: Zinc-fin 32.2 14 0.0003 35.6 -0.2 51 648-706 9-69 (105)
190 PLN02915 cellulose synthase A 30.4 35 0.00077 44.4 2.7 56 545-606 14-69 (1044)
191 KOG1701 Focal adhesion adaptor 28.9 54 0.0012 38.8 3.6 7 649-655 427-433 (468)
192 TIGR02174 CXXU_selWTH selT/sel 28.6 39 0.00084 30.2 2.0 29 40-69 39-67 (72)
193 KOG1632 Uncharacterized PHD Zn 28.4 32 0.0007 39.7 1.8 44 666-713 74-119 (345)
194 PHA02926 zinc finger-like prot 28.4 28 0.0006 38.0 1.2 59 543-604 167-229 (242)
195 PF10367 Vps39_2: Vacuolar sor 27.7 42 0.00091 31.0 2.1 32 544-585 76-107 (109)
196 COG5027 SAS2 Histone acetyltra 27.3 30 0.00066 39.9 1.3 75 761-852 207-285 (395)
197 KOG2114 Vacuolar assembly/sort 25.5 27 0.00059 44.2 0.6 39 547-602 841-880 (933)
198 KOG1829 Uncharacterized conser 25.4 18 0.00039 44.3 -0.9 36 545-586 339-374 (580)
199 PF05301 Mec-17: Touch recepto 25.1 53 0.0011 32.7 2.4 49 837-886 54-103 (120)
200 PF13771 zf-HC5HC2H: PHD-like 24.8 40 0.00087 30.6 1.4 32 544-586 34-67 (90)
201 KOG0317 Predicted E3 ubiquitin 24.5 22 0.00048 39.9 -0.4 54 541-608 234-287 (293)
202 PF10262 Rdx: Rdx family; Int 24.3 22 0.00047 31.9 -0.4 27 41-68 42-68 (76)
203 PF07649 C1_3: C1-like domain; 24.3 23 0.00051 26.3 -0.2 27 649-681 3-29 (30)
204 PRK13361 molybdenum cofactor b 23.9 1.8E+02 0.0039 32.9 6.7 68 254-335 242-310 (329)
205 KOG1081 Transcription factor N 23.2 50 0.0011 39.6 2.2 46 544-602 87-132 (463)
206 COG5540 RING-finger-containing 23.2 27 0.00059 39.6 -0.0 50 543-603 320-370 (374)
207 PLN02195 cellulose synthase A 22.7 59 0.0013 42.2 2.7 56 544-605 4-59 (977)
208 KOG1952 Transcription factor N 22.0 29 0.00063 43.9 -0.1 52 544-603 189-245 (950)
209 PF00130 C1_1: Phorbol esters/ 21.8 94 0.002 25.5 2.9 35 545-586 10-44 (53)
210 KOG3612 PHD Zn-finger protein 21.7 56 0.0012 39.7 2.1 44 558-602 61-107 (588)
211 PF07943 PBP5_C: Penicillin-bi 21.6 1.1E+02 0.0024 27.6 3.6 27 813-839 62-88 (91)
212 TIGR03827 GNAT_ablB putative b 21.5 1.3E+02 0.0028 32.8 4.8 43 845-888 21-63 (266)
213 COG1675 TFA1 Transcription ini 21.2 63 0.0014 34.1 2.2 67 293-365 72-140 (176)
214 KOG1642 Ribonuclease, T2 famil 21.1 45 0.00097 37.0 1.1 59 275-333 116-189 (263)
215 KOG1472 Histone acetyltransfer 20.6 24 0.00052 44.2 -1.2 94 798-892 411-508 (720)
216 COG5243 HRD1 HRD ubiquitin lig 20.4 30 0.00065 40.2 -0.4 57 544-603 285-343 (491)
217 smart00184 RING Ring finger. E 20.0 20 0.00043 26.0 -1.3 25 574-600 14-39 (39)
218 PF08746 zf-RING-like: RING-li 20.0 39 0.00085 27.5 0.3 39 549-600 1-43 (43)
No 1
>COG1246 ArgA N-acetylglutamate synthase and related acetyltransferases [Amino acid transport and metabolism]
Probab=99.16 E-value=4e-11 Score=119.60 Aligned_cols=91 Identities=18% Similarity=0.231 Sum_probs=79.7
Q ss_pred eecceEEEEEeeCCeEEEEEEEE-EeCCeeEEEeeeEeeccccCCChhHHHHHHHHHHhhhcCccEEEecChhhhHHHHH
Q 002312 801 EFGGMYCAILTVNSSVVSAGILR-VFGQEVAELPLVATSKINHGKGYFQLLFACIEKLLSFLRVKSIVLPAAEEAESIWT 879 (937)
Q Consensus 801 ~f~GfY~~VL~~~~~vVsaA~lr-i~g~~vAEiplVAT~~~yRgqG~gr~L~~~IE~~l~~lgV~~LvLpA~~ea~~~w~ 879 (937)
++..|+.+ +.+|.+||||.++ +.+.+++||..|||+|+|||+|+|..|+..++..++.+|++++++.+. . .+-|+
T Consensus 38 ~i~dF~i~--E~~g~viGC~aL~~~~~~~~gE~~~laV~pd~r~~G~G~~Ll~~~~~~Ar~~gi~~lf~LTt-~-~~~~F 113 (153)
T COG1246 38 EIDDFTII--ERDGKVIGCAALHPVLEEDLGELRSLAVHPDYRGSGRGERLLERLLADARELGIKELFVLTT-R-SPEFF 113 (153)
T ss_pred HHhhheee--eeCCcEEEEEeecccCccCeeeEEEEEECHHhcCCCcHHHHHHHHHHHHHHcCCceeeeeec-c-cHHHH
Confidence 45667665 8899999999999 789999999999999999999999999999999999999999999984 2 55666
Q ss_pred hccCcEEcCHHHHHHH
Q 002312 880 DKFGFKKIDPELLSIY 895 (937)
Q Consensus 880 ~kfGF~~i~~~el~~~ 895 (937)
.++||+.++.+++..-
T Consensus 114 ~~~GF~~vd~~~LP~~ 129 (153)
T COG1246 114 AERGFTRVDKDELPEE 129 (153)
T ss_pred HHcCCeECccccCCHH
Confidence 6699999999665543
No 2
>KOG1244 consensus Predicted transcription factor Requiem/NEURO-D4 [Transcription]
Probab=99.15 E-value=7.1e-12 Score=132.82 Aligned_cols=105 Identities=26% Similarity=0.696 Sum_probs=81.7
Q ss_pred ccCCcccccccCccCCcCcccccCCCCceecccCCCcccccccCCC-----CCCCCCCcccccccccccccccccccccc
Q 002312 542 KNGLGIICHCCNSEVSPSQFEAHADGGNLLPCDGCPRAFHKECASL-----SSIPQGDWYCKYCQNMFERKRFLQHDANA 616 (937)
Q Consensus 542 k~~~~i~C~~C~~eiSpS~FE~HAdgG~Ll~CDgCp~afH~~CL~L-----~~vPeG~W~Cp~C~~~~~~ek~l~~n~na 616 (937)
+.--..+|..|...--. =....-..+|+.|..|+++-|.+||.. ..|....|+|.+|+.
T Consensus 220 ~a~Pn~YCDFclgdsr~--nkkt~~peelvscsdcgrsghpsclqft~nm~~avk~yrwqcieck~-------------- 283 (336)
T KOG1244|consen 220 IAQPNPYCDFCLGDSRE--NKKTGMPEELVSCSDCGRSGHPSCLQFTANMIAAVKTYRWQCIECKY-------------- 283 (336)
T ss_pred cccCCcccceecccccc--ccccCCchhhcchhhcCCCCCcchhhhhHHHHHHHHhheeeeeecce--------------
Confidence 33455679999742000 001113569999999999999999973 356678899999983
Q ss_pred cccCccccccchhhhhhhhhhhhccccccCCccccccCCCCCCCCCCCCceeeCCCCCCcCCCCCCCcCcCCcccCCCCC
Q 002312 617 VEAGRVSGVDSVEQITKRCIRIVKNLEAELSGCLLCRGCDFSKSGFGPRTILLCDQCEREFHVGCLKKHKMADLRELPKG 696 (937)
Q Consensus 617 ia~gr~~Gvd~ieqi~~R~iR~vkd~e~e~~~C~vC~~~df~~sgf~~~tLL~CDqCdr~yHv~CL~p~~~~~L~evP~g 696 (937)
|.+|+.++ +++.+|+||-|++.||++||.| +|.+.|+|
T Consensus 284 --------------------------------csicgtse------nddqllfcddcdrgyhmyclsp----pm~eppeg 321 (336)
T KOG1244|consen 284 --------------------------------CSICGTSE------NDDQLLFCDDCDRGYHMYCLSP----PMVEPPEG 321 (336)
T ss_pred --------------------------------eccccCcC------CCceeEeecccCCceeeEecCC----CcCCCCCC
Confidence 99999764 6789999999999999999998 78899999
Q ss_pred cceecCCcc
Q 002312 697 KWFCCMDCS 705 (937)
Q Consensus 697 ~WfCc~~C~ 705 (937)
.|-| .-|-
T Consensus 322 swsc-~KOG 329 (336)
T KOG1244|consen 322 SWSC-HLCL 329 (336)
T ss_pred chhH-HHHH
Confidence 9999 6673
No 3
>PRK10314 putative acyltransferase; Provisional
Probab=99.06 E-value=6.5e-10 Score=110.72 Aligned_cols=81 Identities=17% Similarity=0.114 Sum_probs=72.1
Q ss_pred EEeeCCeEEEEEEEEEeCC--eeEEEeeeEeeccccCCChhHHHHHHHHHHhhhc-CccEEEecChhhhHHHHHhccCcE
Q 002312 809 ILTVNSSVVSAGILRVFGQ--EVAELPLVATSKINHGKGYFQLLFACIEKLLSFL-RVKSIVLPAAEEAESIWTDKFGFK 885 (937)
Q Consensus 809 VL~~~~~vVsaA~lri~g~--~vAEiplVAT~~~yRgqG~gr~L~~~IE~~l~~l-gV~~LvLpA~~ea~~~w~~kfGF~ 885 (937)
++..++++||+|+++..+. ..++|..|||+++|||+|+|++||..+++.++.. +...++|.|...|++||.+ |||.
T Consensus 52 ~~~~~~~~vg~~r~~~~~~~~~~~~i~rv~V~~~~rG~GiG~~Lm~~~~~~~~~~~~~~~i~L~a~~~a~~fY~k-~GF~ 130 (153)
T PRK10314 52 LGWKNDELVAYARILKSDDDLEPVVIGRVIVSEALRGEKVGQQLMSKTLESCTRHWPDKPVYLGAQAHLQNFYQS-FGFI 130 (153)
T ss_pred EEEECCEEEEEEEEecCCCCCCCEEEEEEEECHHHhCCCHHHHHHHHHHHHHHHHCCCCcEEEehHHHHHHHHHH-CCCE
Confidence 4567899999999987543 3689999999999999999999999999998875 7889999999999999999 9999
Q ss_pred EcCHH
Q 002312 886 KIDPE 890 (937)
Q Consensus 886 ~i~~~ 890 (937)
.+++.
T Consensus 131 ~~g~~ 135 (153)
T PRK10314 131 PVTEV 135 (153)
T ss_pred ECCCc
Confidence 99873
No 4
>PF13508 Acetyltransf_7: Acetyltransferase (GNAT) domain; PDB: 3EY5_A 3FRM_B 3D8P_B 3GY9_A 3GYA_A 3S6F_A 2Q7B_A 1CM0_B 1XEB_B 1Y7R_A ....
Probab=99.04 E-value=2e-09 Score=94.49 Aligned_cols=77 Identities=18% Similarity=0.138 Sum_probs=66.9
Q ss_pred eEEEEEeeCCeEEEEEEEEEeCCeeEEEeeeEeeccccCCChhHHHHHHHHHHhhhcCccEEEecChhhhHHHHHhccCc
Q 002312 805 MYCAILTVNSSVVSAGILRVFGQEVAELPLVATSKINHGKGYFQLLFACIEKLLSFLRVKSIVLPAAEEAESIWTDKFGF 884 (937)
Q Consensus 805 fY~~VL~~~~~vVsaA~lri~g~~vAEiplVAT~~~yRgqG~gr~L~~~IE~~l~~lgV~~LvLpA~~ea~~~w~~kfGF 884 (937)
-+.++++.++++||++.+...++ .+.|..+||+++|||||+|+.||+.+++.+.. ..+++.+.+.+.+||.+ +||
T Consensus 3 ~~~~~~~~~~~ivG~~~~~~~~~-~~~i~~~~v~~~~rg~Gig~~ll~~~~~~~~~---~~i~l~~~~~~~~fY~~-~GF 77 (79)
T PF13508_consen 3 ERFFVAEDDGEIVGFIRLWPNED-FAYIGYLAVDPEYRGKGIGSKLLNYLLEKAKS---KKIFLFTNPAAIKFYEK-LGF 77 (79)
T ss_dssp EEEEEEEETTEEEEEEEEEETTT-EEEEEEEEE-GGGTTSSHHHHHHHHHHHHHTC---SEEEEEEEHHHHHHHHH-TTE
T ss_pred cEEEEEEECCEEEEEEEEEEcCC-EEEEEEEEECHHHcCCCHHHHHHHHHHHHcCC---CcEEEEEcHHHHHHHHH-CcC
Confidence 35677799999999999977665 89999999999999999999999999888854 56678888899999999 999
Q ss_pred EE
Q 002312 885 KK 886 (937)
Q Consensus 885 ~~ 886 (937)
++
T Consensus 78 ~~ 79 (79)
T PF13508_consen 78 EE 79 (79)
T ss_dssp EE
T ss_pred CC
Confidence 85
No 5
>KOG0956 consensus PHD finger protein AF10 [General function prediction only]
Probab=99.02 E-value=1.2e-10 Score=135.07 Aligned_cols=142 Identities=23% Similarity=0.519 Sum_probs=94.3
Q ss_pred CCceecccC--CCcccccccCCCCCCCCCCccccccccc---------c--cccccccccccc----------cccCccc
Q 002312 567 GGNLLPCDG--CPRAFHKECASLSSIPQGDWYCKYCQNM---------F--ERKRFLQHDANA----------VEAGRVS 623 (937)
Q Consensus 567 gG~Ll~CDg--Cp~afH~~CL~L~~vPeG~W~Cp~C~~~---------~--~~ek~l~~n~na----------ia~gr~~ 623 (937)
..-|+.||+ |.-+.|+.|+++.+||.|.|||+.|... + ++.+++....|. +..-+|.
T Consensus 19 eNPLVYCDG~nCsVAVHQaCYGIvqVPtGpWfCrKCesqeraarvrCeLCP~kdGALKkTDn~GWAHVVCALYIPEVrFg 98 (900)
T KOG0956|consen 19 ENPLVYCDGHNCSVAVHQACYGIVQVPTGPWFCRKCESQERAARVRCELCPHKDGALKKTDNGGWAHVVCALYIPEVRFG 98 (900)
T ss_pred cCceeeecCCCceeeeehhcceeEecCCCchhhhhhhhhhhhccceeecccCcccceecccCCCceEEEEEeeccceeec
Confidence 458999995 9999999999999999999999999532 2 233444443332 2334555
Q ss_pred cccchhhhhhhhhhhhccccccCCccccccCCCCCCCCCCCCceeeCC--CCCCcCCCCCCCcCcCCcccCC--CCCcce
Q 002312 624 GVDSVEQITKRCIRIVKNLEAELSGCLLCRGCDFSKSGFGPRTILLCD--QCEREFHVGCLKKHKMADLREL--PKGKWF 699 (937)
Q Consensus 624 Gvd~ieqi~~R~iR~vkd~e~e~~~C~vC~~~df~~sgf~~~tLL~CD--qCdr~yHv~CL~p~~~~~L~ev--P~g~Wf 699 (937)
.|..+|+|.-..+.+ +.-+..||||.+.+-. .....+..|.|. .|.+.||+.|.+..++-.-++. -+.--|
T Consensus 99 NV~TMEPIiLq~VP~----dRfnKtCYIC~E~Grp-nkA~~GACMtCNKs~CkqaFHVTCAQ~~GLLCEE~gn~~dNVKY 173 (900)
T KOG0956|consen 99 NVHTMEPIILQDVPH----DRFNKTCYICNEEGRP-NKAAKGACMTCNKSGCKQAFHVTCAQRAGLLCEEEGNISDNVKY 173 (900)
T ss_pred ccccccceeeccCch----hhhcceeeeecccCCc-cccccccceecccccchhhhhhhHhhhhccceecccccccccee
Confidence 555666554222111 2234569999876422 122356789997 7999999999998765332221 112247
Q ss_pred ecCCccchhHHHHHh
Q 002312 700 CCMDCSRINSVLQNL 714 (937)
Q Consensus 700 Cc~~C~~I~~~LqkL 714 (937)
| ..|+..+.+|.+-
T Consensus 174 C-GYCk~HfsKlkk~ 187 (900)
T KOG0956|consen 174 C-GYCKYHFSKLKKS 187 (900)
T ss_pred c-hhHHHHHHHhhcC
Confidence 8 8999999988765
No 6
>PF00583 Acetyltransf_1: Acetyltransferase (GNAT) family; InterPro: IPR000182 The N-acetyltransferases (NAT) (EC 2.3.1.-) are enzymes that use acetyl coenzyme A (CoA) to transfer an acetyl group to a substrate, a reaction implicated in various functions from bacterial antibiotic resistance to mammalian circadian rhythm and chromatin remodeling. The Gcn5-related N-acetyltransferases (GNAT) catalyze the transfer of the acetyl from the CoA donor to a primary amine of the acceptor. The GNAT proteins share a domain composed of four conserved sequence motifs A-D [, ]. This GNAT domain is named after yeast GCN5 (from General Control Nonrepressed) and related histone acetyltransferases (HATs) like Hat1 and PCAF. HATs acetylate lysine residues of amino terminal histone tails, resulting in transcription activation. Another category of GNAT, the aminoglycoside N-acetyltransferases, confer antibiotic resistance by catalyzing the acetylation of amino groups in aminoglycoside antibiotics []. GNAT proteins can also have anabolic and catabolic functions in both prokaryotes and eukaryotes [, , , , ]. The acetyltransferase/GNAT domain forms a structurally conserved fold of 6 to 7 beta strands (B) and 4 helices (H) in the topology B1-H1-H2-B2-B3-B4-H3-B5-H4-B6, followed by a C-terminal strand which may be from the same monomer or contributed by another [, ]. Motifs D (B2-B3), A (B4-H3) and B (B5-H4) are collectively called the HAT core [, , ], while the N-terminal motif C (B1-H1) is less conserved. Some proteins known to contain a GNAT domain: Yeast GCN5 and Hat1, which are histone acetyltransferases (EC 2.3.1.48). Human PCAF, a histone acetyltransferase. Mammalian serotonin N-acetyltransferase (SNAT) or arylalkylamine NAT (AANAT), which acetylates serotonin into a circadian neurohormone that may participate in light-dark rhythms, and human mood and behavior. Mammalian glucosamine 6-phosphate N-acetyltransferase (GNA1) (EC 2.3.1.4). Escherichia coli rimI and rimJ, which acetylate the N-terminal alanine of ribosomal proteins S18 and S5, respectively (EC 2.3.1.128). Mycobacterium tuberculosis aminoglycoside 2'-N-acetyltransferase (aac), which acetylates the 2' hydroxyl or amino group of a broad spectrum of aminoglycoside antibiotics. Bacillus subtilis bltD and paiA, which acetylate spermine and spermidine. This entry represents the entire GNAT domain.; GO: 0008080 N-acetyltransferase activity, 0008152 metabolic process; PDB: 3T9Y_A 2R7H_B 2OZH_A 1Y9W_B 1VKC_B 2OH1_C 3R9E_B 3R9G_B 3R9F_A 3R96_A ....
Probab=98.99 E-value=2.9e-09 Score=92.58 Aligned_cols=74 Identities=20% Similarity=0.250 Sum_probs=67.9
Q ss_pred eeCCeEEEEEEEEEeCC-----eeEEEeeeEeeccccCCChhHHHHHHHHHHhhhcCccEEEecChhh---hHHHHHhcc
Q 002312 811 TVNSSVVSAGILRVFGQ-----EVAELPLVATSKINHGKGYFQLLFACIEKLLSFLRVKSIVLPAAEE---AESIWTDKF 882 (937)
Q Consensus 811 ~~~~~vVsaA~lri~g~-----~vAEiplVAT~~~yRgqG~gr~L~~~IE~~l~~lgV~~LvLpA~~e---a~~~w~~kf 882 (937)
+.+|++||++.+++... ..+.|..++|+++|||||+|+.|++.+++.++..|+..|.+....+ +..||.+ +
T Consensus 2 ~~~~~ivg~~~~~~~~~~~~~~~~~~i~~~~v~~~~r~~Gig~~L~~~~~~~~~~~g~~~i~~~~~~~n~~~~~~~~k-~ 80 (83)
T PF00583_consen 2 EEDGQIVGFASLRPPPEPFDHGNHAYIHRLAVDPEYRGQGIGSKLLQAAEEWARKRGIKRIYLDVSPDNPAARRFYEK-L 80 (83)
T ss_dssp EETTEEEEEEEEEEEETTTTTTTEEEEEEEEECGGGTTSSHHHHHHHHHHHHHHHTTESEEEEEEETTGHHHHHHHHH-T
T ss_pred cCCCEEEEEEEEEECCCccccCCEEEEEEEEEcHHHhhCCCchhhhhhhhhhHHhcCccEEEEEEeCCCHHHHHHHHH-c
Confidence 68999999999999886 5999999999999999999999999999999999999998887654 5699998 9
Q ss_pred CcE
Q 002312 883 GFK 885 (937)
Q Consensus 883 GF~ 885 (937)
||+
T Consensus 81 Gf~ 83 (83)
T PF00583_consen 81 GFE 83 (83)
T ss_dssp TEE
T ss_pred CCC
Confidence 996
No 7
>PF13673 Acetyltransf_10: Acetyltransferase (GNAT) domain; PDB: 2FIW_A 1BOB_A 3FNC_B 3EXN_A.
Probab=98.91 E-value=8.3e-09 Score=95.17 Aligned_cols=74 Identities=18% Similarity=0.227 Sum_probs=65.0
Q ss_pred eEEEEEeeCCeEEEEEEEEEeCCeeEEEeeeEeeccccCCChhHHHHHHHHHHhhhcCccEEEecChhhhHHHHHhccCc
Q 002312 805 MYCAILTVNSSVVSAGILRVFGQEVAELPLVATSKINHGKGYFQLLFACIEKLLSFLRVKSIVLPAAEEAESIWTDKFGF 884 (937)
Q Consensus 805 fY~~VL~~~~~vVsaA~lri~g~~vAEiplVAT~~~yRgqG~gr~L~~~IE~~l~~lgV~~LvLpA~~ea~~~w~~kfGF 884 (937)
...+|++.+|++||.+.++ .-++|..+.|+|+|||+|+|++||..+++.++. |++.|.+.+...|.+||.+ +||
T Consensus 44 ~~~~v~~~~~~ivG~~~~~----~~~~i~~l~v~p~~r~~Gig~~Ll~~~~~~~~~-~~~~l~~~~~~~a~~~y~~-~GF 117 (117)
T PF13673_consen 44 HTIFVAEEGGEIVGFAWLE----PDGEISHLYVLPEYRGRGIGRALLDAAEKEAKD-GIRRLTVEANERARRFYRK-LGF 117 (117)
T ss_dssp CEEEEEEETTEEEEEEEEE----TCEEEEEEEE-GGGTTSSHHHHHHHHHHHHHTT-TCEEEEEEC-HHHHHHHHH-TT-
T ss_pred CEEEEEEECCEEEEEEEEc----CCCeEEEEEEChhhcCCcHHHHHHHHHHHHHHc-CCcEEEEEeCHHHHHHHHh-CCC
Confidence 5667789999999999986 245599999999999999999999999999988 9999999999999999999 998
No 8
>KOG4323 consensus Polycomb-like PHD Zn-finger protein [General function prediction only]
Probab=98.88 E-value=1.4e-09 Score=124.34 Aligned_cols=211 Identities=19% Similarity=0.245 Sum_probs=137.4
Q ss_pred CCcccccccCccCCcCcccccCCCCceecccCCCcccccccCCCCCCCCCCcccccccccccccccccccccccccCccc
Q 002312 544 GLGIICHCCNSEVSPSQFEAHADGGNLLPCDGCPRAFHKECASLSSIPQGDWYCKYCQNMFERKRFLQHDANAVEAGRVS 623 (937)
Q Consensus 544 ~~~i~C~~C~~eiSpS~FE~HAdgG~Ll~CDgCp~afH~~CL~L~~vPeG~W~Cp~C~~~~~~ek~l~~n~naia~gr~~ 623 (937)
.+...|.+|..+... .+.++..|+.|.++||+.|.-......+.|.+..|.......... +...|+..
T Consensus 81 ~~e~~~nv~~s~~~~-------p~~e~~~~~r~~~~~~q~~~i~~~~~~~~~~~~~c~~~~~~~~g~-----a~K~g~~a 148 (464)
T KOG4323|consen 81 SSELNPNVLTSETVL-------PENEKVICGRCKSGYHQGCNIPRFPSLDIGESTECVFPIFSQEGG-----ALKKGRLA 148 (464)
T ss_pred ccccCCccccccccc-------CchhhhhhhhhccCcccccCccCcCcCCccccccccccccccccc-----cccccccc
Confidence 455678888864332 466899999999999999985443444679999888653211111 11112211
Q ss_pred ccc-chhhhhhhhhhhhcccc-ccCCccccccCCCCCCCCCCCCceeeCCCCCCcCCCCCCCcCcCCcccCCCCCcceec
Q 002312 624 GVD-SVEQITKRCIRIVKNLE-AELSGCLLCRGCDFSKSGFGPRTILLCDQCEREFHVGCLKKHKMADLRELPKGKWFCC 701 (937)
Q Consensus 624 Gvd-~ieqi~~R~iR~vkd~e-~e~~~C~vC~~~df~~sgf~~~tLL~CDqCdr~yHv~CL~p~~~~~L~evP~g~WfCc 701 (937)
+.. ++. .. ....|.. .-+..|.+|....+ + ..+.||+|+.|..|||..|.+|.....+..-|...|||
T Consensus 149 ~~~l~y~-~~----~l~wD~~~~~n~qc~vC~~g~~---~-~~NrmlqC~~C~~~fHq~Chqp~i~~~l~~D~~~~w~C- 218 (464)
T KOG4323|consen 149 RPSLPYP-EA----SLDWDSGHKVNLQCSVCYCGGP---G-AGNRMLQCDKCRQWYHQACHQPLIKDELAGDPFYEWFC- 218 (464)
T ss_pred cccccCc-cc----ccccCccccccceeeeeecCCc---C-ccceeeeecccccHHHHHhccCCCCHhhccCccceEee-
Confidence 100 000 00 0000000 01123888886542 2 24489999999999999999987554455557889999
Q ss_pred CCccchhHHHHHhhhhccccCchhhHHH--hh--hhccCccccccccCcceeEcc-CCCCC---hhhHHHHHHHHHhhhh
Q 002312 702 MDCSRINSVLQNLLVQEAEKLPEFHLNA--IK--KYAGNSLETVSDIDVRWRLLS-GKAAT---PETRLLLSQAVAIFHD 773 (937)
Q Consensus 702 ~~C~~I~~~LqkLVa~g~e~lp~sll~~--I~--k~~e~gle~~~~~dikWqLLs-gk~~s---~e~~~~La~AL~If~E 773 (937)
..|..-...+..+-.+|++.++..+.+. +. +|+..-+++....+-.|..|. |...+ .+..+.+..|++-...
T Consensus 219 ~~C~~~~~~~~r~t~~~~dv~~lal~~~~~~~~~k~~~~~~ei~~f~e~~~~slp~~e~~tsp~~~~~~~~lsal~~~~~ 298 (464)
T KOG4323|consen 219 DVCNRGPKKVPRLTLRWADVLHLALYNLKPMLKKKYFKSLVEILLFCEESWPSLPFYEPKTSPVTERSSSLLSALSSYKS 298 (464)
T ss_pred hhhccchhhccccccccccccchhhhhhhhhhccCCcccHHHHHHHHhhccccccccCCccccccchhhHHHHhhhcccc
Confidence 8999999999999999999888766333 33 666666666667778888775 55444 4567788888888876
Q ss_pred cCC
Q 002312 774 CFD 776 (937)
Q Consensus 774 cF~ 776 (937)
.|.
T Consensus 299 ~f~ 301 (464)
T KOG4323|consen 299 RFV 301 (464)
T ss_pred ccc
Confidence 663
No 9
>KOG1512 consensus PHD Zn-finger protein [General function prediction only]
Probab=98.83 E-value=8e-10 Score=118.03 Aligned_cols=81 Identities=31% Similarity=0.784 Sum_probs=68.2
Q ss_pred CCCceecccCCCcccccccCCCC-----CCCCCCcccccccccccccccccccccccccCccccccchhhhhhhhhhhhc
Q 002312 566 DGGNLLPCDGCPRAFHKECASLS-----SIPQGDWYCKYCQNMFERKRFLQHDANAVEAGRVSGVDSVEQITKRCIRIVK 640 (937)
Q Consensus 566 dgG~Ll~CDgCp~afH~~CL~L~-----~vPeG~W~Cp~C~~~~~~ek~l~~n~naia~gr~~Gvd~ieqi~~R~iR~vk 640 (937)
..+.|++|..|..++|..|+.+. .+....|.|..|+-
T Consensus 275 r~~S~I~C~~C~~~~HP~Ci~M~~elv~~~KTY~W~C~~C~l-------------------------------------- 316 (381)
T KOG1512|consen 275 RRNSWIVCKPCATRPHPYCVAMIPELVGQYKTYFWKCSSCEL-------------------------------------- 316 (381)
T ss_pred hhccceeecccccCCCCcchhcCHHHHhHHhhcchhhcccHh--------------------------------------
Confidence 34689999999999999999742 34567899999972
Q ss_pred cccccCCccccccCCCCCCCCCCCCceeeCCCCCCcCCCCCCCcCcCCcccCCCCCcceecCCc
Q 002312 641 NLEAELSGCLLCRGCDFSKSGFGPRTILLCDQCEREFHVGCLKKHKMADLRELPKGKWFCCMDC 704 (937)
Q Consensus 641 d~e~e~~~C~vC~~~df~~sgf~~~tLL~CDqCdr~yHv~CL~p~~~~~L~evP~g~WfCc~~C 704 (937)
|.+|++.. .+..+++||.|++.||..|+ .|..+|.|.|.|-..|
T Consensus 317 --------C~IC~~P~------~E~E~~FCD~CDRG~HT~CV------GL~~lP~G~WICD~~C 360 (381)
T KOG1512|consen 317 --------CRICLGPV------IESEHLFCDVCDRGPHTLCV------GLQDLPRGEWICDMRC 360 (381)
T ss_pred --------hhccCCcc------cchheeccccccCCCCcccc------ccccccCccchhhhHH
Confidence 89998763 46789999999999999999 5888999999995456
No 10
>PTZ00330 acetyltransferase; Provisional
Probab=98.78 E-value=3.8e-08 Score=94.55 Aligned_cols=83 Identities=14% Similarity=0.207 Sum_probs=72.2
Q ss_pred EEEEEeeCCeEEEEEEEEEeC------CeeEEEeeeEeeccccCCChhHHHHHHHHHHhhhcCccEEEecChhhhHHHHH
Q 002312 806 YCAILTVNSSVVSAGILRVFG------QEVAELPLVATSKINHGKGYFQLLFACIEKLLSFLRVKSIVLPAAEEAESIWT 879 (937)
Q Consensus 806 Y~~VL~~~~~vVsaA~lri~g------~~vAEiplVAT~~~yRgqG~gr~L~~~IE~~l~~lgV~~LvLpA~~ea~~~w~ 879 (937)
+.++...+|++||.+.+.... ...++|-.+.|+++|||+|+|+.||..+++.++..|+.++++.+...|..||+
T Consensus 53 ~~~~~~~~~~~vG~~~~~~~~~~~~~~~~~~~i~~~~V~~~~rg~Gig~~l~~~~~~~a~~~~~~~l~l~~n~~a~~~y~ 132 (147)
T PTZ00330 53 RVFVHSPTQRIVGTASLFVEPKFTRGGKCVGHIEDVVVDPSYRGQGLGRALISDLCEIARSSGCYKVILDCTEDMVAFYK 132 (147)
T ss_pred EEEEEeCCCEEEEEEEEEeccccccCCCceEEEEEEEECHHHcCCCHHHHHHHHHHHHHHHCCCCEEEEecChHHHHHHH
Confidence 345556789999999986532 23678889999999999999999999999999999999999999999999999
Q ss_pred hccCcEEcCH
Q 002312 880 DKFGFKKIDP 889 (937)
Q Consensus 880 ~kfGF~~i~~ 889 (937)
+ +||.....
T Consensus 133 k-~GF~~~~~ 141 (147)
T PTZ00330 133 K-LGFRACER 141 (147)
T ss_pred H-CCCEEece
Confidence 9 99998764
No 11
>PRK10146 aminoalkylphosphonic acid N-acetyltransferase; Provisional
Probab=98.75 E-value=3.1e-08 Score=94.87 Aligned_cols=80 Identities=14% Similarity=0.091 Sum_probs=68.8
Q ss_pred EEEeeCCeEEEEEEEEEeC-----CeeEEEeeeEeeccccCCChhHHHHHHHHHHhhhcCccEEEecCh---hhhHHHHH
Q 002312 808 AILTVNSSVVSAGILRVFG-----QEVAELPLVATSKINHGKGYFQLLFACIEKLLSFLRVKSIVLPAA---EEAESIWT 879 (937)
Q Consensus 808 ~VL~~~~~vVsaA~lri~g-----~~vAEiplVAT~~~yRgqG~gr~L~~~IE~~l~~lgV~~LvLpA~---~ea~~~w~ 879 (937)
+|++.++++||.+.++... ...++|..++|+++|||||+|+.||..+++.++..|...+.|.+. ..|..||+
T Consensus 50 ~v~~~~~~ivG~~~~~~~~~~~~~~~~~~i~~l~v~p~~rg~GiG~~Ll~~~~~~a~~~~~~~i~l~~~~~n~~a~~fY~ 129 (144)
T PRK10146 50 HLALLDGEVVGMIGLHLQFHLHHVNWIGEIQELVVMPQARGLNVGSKLLAWAEEEARQAGAEMTELSTNVKRHDAHRFYL 129 (144)
T ss_pred EEEEECCEEEEEEEEEecccccccchhheeheeEECHHHcCCCHHHHHHHHHHHHHHHcCCcEEEEecCCCchHHHHHHH
Confidence 4567899999999987642 225789999999999999999999999999999999999988765 47999999
Q ss_pred hccCcEEcC
Q 002312 880 DKFGFKKID 888 (937)
Q Consensus 880 ~kfGF~~i~ 888 (937)
+ +||...+
T Consensus 130 ~-~Gf~~~~ 137 (144)
T PRK10146 130 R-EGYEQSH 137 (144)
T ss_pred H-cCCchhh
Confidence 9 9997653
No 12
>PLN02706 glucosamine 6-phosphate N-acetyltransferase
Probab=98.74 E-value=5.8e-08 Score=94.29 Aligned_cols=82 Identities=13% Similarity=0.272 Sum_probs=69.5
Q ss_pred EEEEEee--CCeEEEEEEEEEeC------CeeEEEeeeEeeccccCCChhHHHHHHHHHHhhhcCccEEEecChhhhHHH
Q 002312 806 YCAILTV--NSSVVSAGILRVFG------QEVAELPLVATSKINHGKGYFQLLFACIEKLLSFLRVKSIVLPAAEEAESI 877 (937)
Q Consensus 806 Y~~VL~~--~~~vVsaA~lri~g------~~vAEiplVAT~~~yRgqG~gr~L~~~IE~~l~~lgV~~LvLpA~~ea~~~ 877 (937)
|.++.+. ++++||.+.+++.. ..++.|.-++|.++|||||+|+.|++++++.|+.+|+++|.+....+...|
T Consensus 54 ~~~~~~~~~~~~ivG~~~~~~~~~~~~~~~~~~~i~~i~V~~~~rg~GiG~~ll~~~~~~a~~~g~~~i~l~~~~~N~~~ 133 (150)
T PLN02706 54 LICVIEDAASGRIIATGSVFVERKFIRNCGKVGHIEDVVVDSAARGKGLGKKIIEALTEHARSAGCYKVILDCSEENKAF 133 (150)
T ss_pred EEEEEEeCCCCcEEEEEEEEEEeecccCCCcEEEEEEEEECHHHcCCCHHHHHHHHHHHHHHHcCCCEEEEEeccccHHH
Confidence 4444454 68999999886432 256778889999999999999999999999999999999999998888999
Q ss_pred HHhccCcEEcC
Q 002312 878 WTDKFGFKKID 888 (937)
Q Consensus 878 w~~kfGF~~i~ 888 (937)
|.+ +||...+
T Consensus 134 y~k-~GF~~~g 143 (150)
T PLN02706 134 YEK-CGYVRKE 143 (150)
T ss_pred HHH-CcCEEeh
Confidence 998 9999764
No 13
>PF15446 zf-PHD-like: PHD/FYVE-zinc-finger like domain
Probab=98.73 E-value=9.8e-09 Score=103.38 Aligned_cols=133 Identities=19% Similarity=0.378 Sum_probs=82.8
Q ss_pred cccccCccCCcCcccccCCCCceecccCCCcccccccCCC--------CCCCCCC--ccccccccccccccccccccccc
Q 002312 548 ICHCCNSEVSPSQFEAHADGGNLLPCDGCPRAFHKECASL--------SSIPQGD--WYCKYCQNMFERKRFLQHDANAV 617 (937)
Q Consensus 548 ~C~~C~~eiSpS~FE~HAdgG~Ll~CDgCp~afH~~CL~L--------~~vPeG~--W~Cp~C~~~~~~ek~l~~n~nai 617 (937)
.|..|...-..+ ..|.|+.|.||..+||+.||+. ++|.++. .+|..|..-.+.++..++.....
T Consensus 1 ~C~~C~~~g~~~------~kG~Lv~CQGCs~sYHk~CLG~Rs~ReHlVTKVg~d~FVLQCr~Cig~~~kKD~~aP~~~~C 74 (175)
T PF15446_consen 1 TCDTCGYEGDDR------NKGPLVYCQGCSSSYHKACLGPRSQREHLVTKVGDDDFVLQCRRCIGIAHKKDPRAPHHGMC 74 (175)
T ss_pred CcccccCCCCCc------cCCCeEEcCccChHHHhhhcCCccccceeeEEEcCCceEEechhhcChhhcccCCCCCCCcc
Confidence 377776432221 5789999999999999999973 4555554 78999988777777777766655
Q ss_pred ccCccccccchhhhhhhhhhhhccccccCCccccccCCCCCCCCCCCCceeeCCCCCCcCCCCCCCcCc
Q 002312 618 EAGRVSGVDSVEQITKRCIRIVKNLEAELSGCLLCRGCDFSKSGFGPRTILLCDQCEREFHVGCLKKHK 686 (937)
Q Consensus 618 a~gr~~Gvd~ieqi~~R~iR~vkd~e~e~~~C~vC~~~df~~sgf~~~tLL~CDqCdr~yHv~CL~p~~ 686 (937)
......|....+--.....++++....++++=...-..+....+..++.|+.|..|.++||+..|++.+
T Consensus 75 ~~C~~~G~~c~pfr~r~T~kQEe~~ReeNgG~DPit~Vd~~lvnN~~nVLFRC~~C~RawH~~HLP~~~ 143 (175)
T PF15446_consen 75 QQCKKPGPSCKPFRPRKTPKQEEKLREENGGVDPITPVDPELVNNPDNVLFRCTSCHRAWHFEHLPPPS 143 (175)
T ss_pred cccCCCCCCCcccCCCCCcHHHHHHHHHcCCCCCCccCCHHHccChhheEEecCCccceeehhhCCCCc
Confidence 544444443322111112222322333333322233333333334567789999999999999998853
No 14
>cd02169 Citrate_lyase_ligase Citrate lyase ligase. Citrate lyase ligase, also known as [Citrate (pro-3S)-lyase] ligase, is responsible for acetylation of the (2-(5''-phosphoribosyl)-3'-dephosphocoenzyme-A) prosthetic group of the gamma subunit of citrate lyase, converting the inactive thiol form of this enzyme to the active form. The acetylation of 1 molecule of deacetyl-citrate lyase to enzymatically active citrate lyase requires 6 molecules of ATP. The Adenylylyltranferase activity of the enzyme involves the formation of AMP and and pyrophosphate in the acetylation reaction.
Probab=98.70 E-value=4.6e-08 Score=107.99 Aligned_cols=74 Identities=15% Similarity=0.201 Sum_probs=67.6
Q ss_pred EEeeCCeEEEEEEEEEeCCeeEEEeeeEeeccccCCChhHHHHHHHHHHhhhcCccEEEecChhhhHHHHHhccCcEEcC
Q 002312 809 ILTVNSSVVSAGILRVFGQEVAELPLVATSKINHGKGYFQLLFACIEKLLSFLRVKSIVLPAAEEAESIWTDKFGFKKID 888 (937)
Q Consensus 809 VL~~~~~vVsaA~lri~g~~vAEiplVAT~~~yRgqG~gr~L~~~IE~~l~~lgV~~LvLpA~~ea~~~w~~kfGF~~i~ 888 (937)
|...++++||++++.. .+|..|||+++|||||+|++||+++++.++..|+++++|.+..++.+||.+ +||..++
T Consensus 10 v~~~~~~iVG~~~l~~-----~~I~~vaV~p~~Rg~GiG~~Ll~~l~~~a~~~g~~~i~L~t~~~~~~fYek-~GF~~~~ 83 (297)
T cd02169 10 IFDDAGELIATGSIAG-----NVLKCVAVCPKYQGEGLALKIVSELINKAYEEGIFHLFLFTKPKNAKFFRG-LGFKELA 83 (297)
T ss_pred EEEECCEEEEEEEecc-----CEEEEEEECHHHcCCCHHHHHHHHHHHHHHHCCCCEEEEEEcccHHHHHHH-CCCEEec
Confidence 3456799999998842 368999999999999999999999999999999999999999999999998 9999998
No 15
>PLN02825 amino-acid N-acetyltransferase
Probab=98.70 E-value=7e-08 Score=113.34 Aligned_cols=104 Identities=21% Similarity=0.304 Sum_probs=83.9
Q ss_pred EEEeeCCeEEEEEEEEEeC-CeeEEEeeeEeeccccCCChhHHHHHHHHHHhhhcCccEEEecChhhhHHHHHhccCcEE
Q 002312 808 AILTVNSSVVSAGILRVFG-QEVAELPLVATSKINHGKGYFQLLFACIEKLLSFLRVKSIVLPAAEEAESIWTDKFGFKK 886 (937)
Q Consensus 808 ~VL~~~~~vVsaA~lri~g-~~vAEiplVAT~~~yRgqG~gr~L~~~IE~~l~~lgV~~LvLpA~~ea~~~w~~kfGF~~ 886 (937)
+|++.||++||++.+..+. .+.+||-.+||+++|||+|+|++||+++|+.+++.|+++|++.+ ..+..||.+ +||..
T Consensus 410 ~V~e~Dg~IVG~aal~~~~~~~~aEI~~laV~P~yRGkGiG~~LL~~le~~Ar~~G~~~L~Llt-t~a~~fY~k-~GF~~ 487 (515)
T PLN02825 410 VVVEREGSIIACAALFPFFEEKCGEVAAIAVSPECRGQGQGDKLLDYIEKKAASLGLEKLFLLT-TRTADWFVR-RGFSE 487 (515)
T ss_pred EEEEECCEEEEEEEEEeecCCCcEEEEEEEECHHHcCCCHHHHHHHHHHHHHHHCCCCEEEEEe-CcHHHHHHH-CCCEE
Confidence 3468999999999987765 46899999999999999999999999999999999999999976 467788887 99999
Q ss_pred cCHHHHHHHHhhCCceeeeCCCeeeeecc
Q 002312 887 IDPELLSIYRKRCSQLVTFKGTSMLQKRV 915 (937)
Q Consensus 887 i~~~el~~~~~~~~~ll~F~gt~~LqK~l 915 (937)
.+.++|..-++..++.- .++-.+-|.|
T Consensus 488 ~~~~~lp~~~~~~yn~~--r~sk~~~k~l 514 (515)
T PLN02825 488 CSIESLPEARRKRINLS--RGSKYYMKKL 514 (515)
T ss_pred eChhhCCHHHHhhcCcc--CCcEEEEEec
Confidence 99988776666523321 3444444443
No 16
>PRK07922 N-acetylglutamate synthase; Validated
Probab=98.69 E-value=7.4e-08 Score=97.37 Aligned_cols=79 Identities=20% Similarity=0.323 Sum_probs=71.0
Q ss_pred EEEe-eCCeEEEEEEEEEeCCeeEEEeeeEeeccccCCChhHHHHHHHHHHhhhcCccEEEecChhhhHHHHHhccCcEE
Q 002312 808 AILT-VNSSVVSAGILRVFGQEVAELPLVATSKINHGKGYFQLLFACIEKLLSFLRVKSIVLPAAEEAESIWTDKFGFKK 886 (937)
Q Consensus 808 ~VL~-~~~~vVsaA~lri~g~~vAEiplVAT~~~yRgqG~gr~L~~~IE~~l~~lgV~~LvLpA~~ea~~~w~~kfGF~~ 886 (937)
+|++ .++++||.+.+.+...+.++|..++|+++|||+|+|+.||+++++.++..|++++.+... +..||.+ +||+.
T Consensus 48 ~va~~~~~~iiG~~~~~~~~~~~~~i~~l~V~p~~rgkGiG~~Ll~~~~~~a~~~g~~~l~~~~~--~~~fY~k-~GF~~ 124 (169)
T PRK07922 48 WVAEHLDGEVVGCGALHVMWEDLAEIRTVAVDPAARGRGVGHAIVERLLDVARELGLSRVFVLTF--EVEFFAR-HGFVE 124 (169)
T ss_pred EEEEecCCcEEEEEEEeecCCCceEEEEEEECHHHhCCCHHHHHHHHHHHHHHHcCCCEEEEEec--cHHHHHH-CCCEE
Confidence 3556 889999999988878889999999999999999999999999999999999999987654 4789999 99999
Q ss_pred cCH
Q 002312 887 IDP 889 (937)
Q Consensus 887 i~~ 889 (937)
++.
T Consensus 125 ~~~ 127 (169)
T PRK07922 125 IDG 127 (169)
T ss_pred Ccc
Confidence 875
No 17
>PRK07757 acetyltransferase; Provisional
Probab=98.69 E-value=7.7e-08 Score=93.62 Aligned_cols=81 Identities=21% Similarity=0.325 Sum_probs=71.8
Q ss_pred EEeeCCeEEEEEEEEEeCCeeEEEeeeEeeccccCCChhHHHHHHHHHHhhhcCccEEEecChhhhHHHHHhccCcEEcC
Q 002312 809 ILTVNSSVVSAGILRVFGQEVAELPLVATSKINHGKGYFQLLFACIEKLLSFLRVKSIVLPAAEEAESIWTDKFGFKKID 888 (937)
Q Consensus 809 VL~~~~~vVsaA~lri~g~~vAEiplVAT~~~yRgqG~gr~L~~~IE~~l~~lgV~~LvLpA~~ea~~~w~~kfGF~~i~ 888 (937)
++..++++||.+.+.+.+.+.++|-.|+|+++|||+|+|+.|+..+++.+...|+.++.+... +..||.+ +||+.++
T Consensus 45 i~~~~~~lvG~~~l~~~~~~~~~i~~v~V~p~~rg~Glg~~Ll~~l~~~a~~~g~~~i~~~~~--~~~~Y~k-~GF~~~~ 121 (152)
T PRK07757 45 VAEEEGEIVGCCALHILWEDLAEIRSLAVSEDYRGQGIGRMLVEACLEEARELGVKRVFALTY--QPEFFEK-LGFREVD 121 (152)
T ss_pred EEEECCEEEEEEEEEeccCCceEEEEEEECHHHcCCCHHHHHHHHHHHHHHhCCCCeEEEEeC--cHHHHHH-CCCEEcc
Confidence 446789999999999988889999999999999999999999999999999999999876543 4689999 9999998
Q ss_pred HHHH
Q 002312 889 PELL 892 (937)
Q Consensus 889 ~~el 892 (937)
..++
T Consensus 122 ~~~~ 125 (152)
T PRK07757 122 KEAL 125 (152)
T ss_pred cccC
Confidence 8444
No 18
>PF13527 Acetyltransf_9: Acetyltransferase (GNAT) domain; PDB: 3SXN_C 2I00_D 1M4D_B 1M44_A 1M4G_B 1M4I_A 2OZG_A 2HV2_F 3N7Z_A 3RYO_B ....
Probab=98.68 E-value=1.4e-07 Score=88.79 Aligned_cols=111 Identities=22% Similarity=0.271 Sum_probs=80.6
Q ss_pred HHHHHHhhhhcCCCcccCCCCCCccccccccccCCCceecceEEEEEeeCCeEEEEEEEEEe-----CC--eeEEEeeeE
Q 002312 764 LSQAVAIFHDCFDPIVDSISGRDLIPSMVYGRNLRGQEFGGMYCAILTVNSSVVSAGILRVF-----GQ--EVAELPLVA 836 (937)
Q Consensus 764 La~AL~If~EcF~Pivd~~TgrDLIp~MVy~r~~~~~~f~GfY~~VL~~~~~vVsaA~lri~-----g~--~vAEiplVA 836 (937)
+.+...++.++|.+-.++. ..+-|..+. +..-++++.+.++++||.+.+... |. .++.|--||
T Consensus 10 ~~~i~~l~~~~F~~~~~~~------~~~~~~~~~----~~~~~~~~~~~~~~ivg~~~~~~~~~~~~g~~~~~~~i~~v~ 79 (127)
T PF13527_consen 10 FEQIIELFNEAFGDSESPP------EIWEYFRNL----YGPGRCVVAEDDGKIVGHVGLIPRRLSVGGKKFKAAYIGDVA 79 (127)
T ss_dssp HHHHHHHHHHHTTT-CHHH------HHHHHHHHH----HHTTEEEEEEETTEEEEEEEEEEEEEEETTEEEEEEEEEEEE
T ss_pred HHHHHHHHHHHCCCCCCch------hhhhhhhcc----cCcCcEEEEEECCEEEEEEEEEEEEEEECCEEEEEEEEEEEE
Confidence 4667778889995543331 223332221 111256777889999998877554 43 589999999
Q ss_pred eeccccCCChhHHHHHHHHHHhhhcCccEEEecChhhhHHHHHhccCcEEc
Q 002312 837 TSKINHGKGYFQLLFACIEKLLSFLRVKSIVLPAAEEAESIWTDKFGFKKI 887 (937)
Q Consensus 837 T~~~yRgqG~gr~L~~~IE~~l~~lgV~~LvLpA~~ea~~~w~~kfGF~~i 887 (937)
|+|+|||||+|++||.++++.++..|+..+++.+ ...+||.+ |||+.+
T Consensus 80 v~p~~R~~Gl~~~L~~~~~~~~~~~g~~~~~l~~--~~~~~Y~~-~G~~~~ 127 (127)
T PF13527_consen 80 VDPEYRGRGLGRQLMRALLERARERGVPFIFLFP--SSPPFYRR-FGFEYA 127 (127)
T ss_dssp E-GGGTTSSHHHHHHHHHHHHHHHTT-SEEEEE---SSHHHHHH-TTEEEE
T ss_pred ECHHHcCCCHHHHHHHHHHHHHHhCCCCEEEEec--CChhhhhc-CCCEEC
Confidence 9999999999999999999999999999999887 34789988 999864
No 19
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=98.65 E-value=8.2e-09 Score=121.42 Aligned_cols=55 Identities=38% Similarity=0.905 Sum_probs=47.2
Q ss_pred cccCCccccccCCCCCCCCCCCCceeeCCCCCCc-CCCCCCCcCcCCcccCCCCCcceecCCccchh
Q 002312 643 EAELSGCLLCRGCDFSKSGFGPRTILLCDQCERE-FHVGCLKKHKMADLRELPKGKWFCCMDCSRIN 708 (937)
Q Consensus 643 e~e~~~C~vC~~~df~~sgf~~~tLL~CDqCdr~-yHv~CL~p~~~~~L~evP~g~WfCc~~C~~I~ 708 (937)
..+...|.+|..+| .++.||+||.|... ||++||+| +|.++|-+.||| .+|..+.
T Consensus 212 ~~E~~~C~IC~~~D------pEdVLLLCDsCN~~~YH~YCLDP----dl~eiP~~eWYC-~NC~dL~ 267 (1134)
T KOG0825|consen 212 SQEEVKCDICTVHD------PEDVLLLCDSCNKVYYHVYCLDP----DLSESPVNEWYC-TNCSLLE 267 (1134)
T ss_pred ccccccceeeccCC------hHHhheeecccccceeeccccCc----ccccccccceec-Ccchhhh
Confidence 34456799999876 56789999999999 99999998 899999999999 8997543
No 20
>PRK03624 putative acetyltransferase; Provisional
Probab=98.65 E-value=9.6e-08 Score=89.65 Aligned_cols=83 Identities=19% Similarity=0.155 Sum_probs=69.1
Q ss_pred EEEEEeeCCeEEEEEEEEEeCCeeEEEeeeEeeccccCCChhHHHHHHHHHHhhhcCccEEEecCh---hhhHHHHHhcc
Q 002312 806 YCAILTVNSSVVSAGILRVFGQEVAELPLVATSKINHGKGYFQLLFACIEKLLSFLRVKSIVLPAA---EEAESIWTDKF 882 (937)
Q Consensus 806 Y~~VL~~~~~vVsaA~lri~g~~vAEiplVAT~~~yRgqG~gr~L~~~IE~~l~~lgV~~LvLpA~---~ea~~~w~~kf 882 (937)
+.+++..++++||.+.+...+ ..+.+..++|+++|||||+|+.|+..+++.++..|++++.+.+. ..+..+|.+ +
T Consensus 46 ~~~v~~~~~~~vG~~~~~~~~-~~~~i~~i~v~p~~rg~Gig~~ll~~~~~~~~~~~~~~~~~~~~~~N~~~~~~y~k-~ 123 (140)
T PRK03624 46 LFLVAEVGGEVVGTVMGGYDG-HRGWAYYLAVHPDFRGRGIGRALVARLEKKLIARGCPKINLQVREDNDAVLGFYEA-L 123 (140)
T ss_pred eEEEEEcCCcEEEEEEeeccC-CCceEEEEEECHHHhCCCHHHHHHHHHHHHHHHCCCCEEEEEEecCcHHHHHHHHH-c
Confidence 445667889999999876543 45678889999999999999999999999999999999877654 357889988 9
Q ss_pred CcEEcCHH
Q 002312 883 GFKKIDPE 890 (937)
Q Consensus 883 GF~~i~~~ 890 (937)
||+..+..
T Consensus 124 GF~~~~~~ 131 (140)
T PRK03624 124 GYEEQDRI 131 (140)
T ss_pred CCccccEE
Confidence 99976643
No 21
>TIGR01890 N-Ac-Glu-synth amino-acid N-acetyltransferase. This model represents a clade of amino-acid N-acetyltransferases acting mainly on glutamate in the first step of the "acetylated" ornithine biosynthesis pathway. For this reason it is also called N-acetylglutamate synthase. The enzyme may also act on aspartate.
Probab=98.59 E-value=2.1e-07 Score=107.15 Aligned_cols=85 Identities=15% Similarity=0.249 Sum_probs=73.9
Q ss_pred EEeeCCeEEEEEEEEEeC-CeeEEEeeeEeeccccCCChhHHHHHHHHHHhhhcCccEEEecChhhhHHHHHhccCcEEc
Q 002312 809 ILTVNSSVVSAGILRVFG-QEVAELPLVATSKINHGKGYFQLLFACIEKLLSFLRVKSIVLPAAEEAESIWTDKFGFKKI 887 (937)
Q Consensus 809 VL~~~~~vVsaA~lri~g-~~vAEiplVAT~~~yRgqG~gr~L~~~IE~~l~~lgV~~LvLpA~~ea~~~w~~kfGF~~i 887 (937)
|++.++++||++.+..+. .+.++|-.++|+++|||||+|++||+.+++.+++.|+++|++.+. .+..||.+ +||+.+
T Consensus 326 V~~~dg~iVG~~~~~~~~~~~~~~I~~l~V~p~~Rg~GiG~~Ll~~l~~~A~~~G~~~l~v~~~-~a~~fY~k-~GF~~~ 403 (429)
T TIGR01890 326 IIEHDGNIIGCAALYPYAEEDCGEMACLAVSPEYQDGGRGERLLAHIEDRARQMGISRLFVLTT-RTGHWFRE-RGFQTA 403 (429)
T ss_pred EEEECCEEEEEEEEEecCCCCeEEEEEEEECHHHcCCCHHHHHHHHHHHHHHHcCCCEEEEeec-chHHHHHH-CCCEEC
Confidence 457899999999998874 468999999999999999999999999999999999999887754 56789988 999999
Q ss_pred CHHHHHHH
Q 002312 888 DPELLSIY 895 (937)
Q Consensus 888 ~~~el~~~ 895 (937)
+..++..-
T Consensus 404 g~~~l~~~ 411 (429)
T TIGR01890 404 SVDELPEA 411 (429)
T ss_pred ChhhCCHH
Confidence 98654433
No 22
>COG5141 PHD zinc finger-containing protein [General function prediction only]
Probab=98.57 E-value=1.5e-08 Score=114.68 Aligned_cols=126 Identities=28% Similarity=0.634 Sum_probs=77.9
Q ss_pred CCcccccccCccCCcCcccccCCCCceecccCCCcccccccCCCCCCCCCCccccccccc--------ccc--ccccc--
Q 002312 544 GLGIICHCCNSEVSPSQFEAHADGGNLLPCDGCPRAFHKECASLSSIPQGDWYCKYCQNM--------FER--KRFLQ-- 611 (937)
Q Consensus 544 ~~~i~C~~C~~eiSpS~FE~HAdgG~Ll~CDgCp~afH~~CL~L~~vPeG~W~Cp~C~~~--------~~~--ek~l~-- 611 (937)
.-+..|.+|...-+. ..+.+++||+|..+.|+.|+++.-+|+|.|+|..|... |+. .+++.
T Consensus 191 ~~d~~C~~c~~t~~e-------N~naiVfCdgC~i~VHq~CYGI~f~peG~WlCrkCi~~~~~i~~C~fCps~dGaFkqT 263 (669)
T COG5141 191 EFDDICTKCTSTHNE-------NSNAIVFCDGCEICVHQSCYGIQFLPEGFWLCRKCIYGEYQIRCCSFCPSSDGAFKQT 263 (669)
T ss_pred hhhhhhHhccccccC-------CcceEEEecCcchhhhhhcccceecCcchhhhhhhcccccceeEEEeccCCCCceeec
Confidence 345678888853211 45789999999999999999999999999999999642 111 11111
Q ss_pred ------cccccccc-----CccccccchhhhhhhhhhhhccccccCCccccccCCCCCCCCCCCCceeeCC--CCCCcCC
Q 002312 612 ------HDANAVEA-----GRVSGVDSVEQITKRCIRIVKNLEAELSGCLLCRGCDFSKSGFGPRTILLCD--QCEREFH 678 (937)
Q Consensus 612 ------~n~naia~-----gr~~Gvd~ieqi~~R~iR~vkd~e~e~~~C~vC~~~df~~sgf~~~tLL~CD--qCdr~yH 678 (937)
++..++.. +.....++++.+. .+....+ ..+|.+|+.. .++.++|. .|-++||
T Consensus 264 ~dgrW~H~iCA~~~pelsF~~l~~~dpI~~i~-----sVs~srw-kl~C~iCk~~--------~GtcIqCs~~nC~~aYH 329 (669)
T COG5141 264 SDGRWGHVICAMFNPELSFGHLLSKDPIDNIA-----SVSSSRW-KLGCLICKEF--------GGTCIQCSYFNCTRAYH 329 (669)
T ss_pred cCCchHhHhHHHhcchhccccccccchhhhhc-----ccchhhH-hheeeEEccc--------Ccceeeecccchhhhhh
Confidence 11111110 1111111111111 1111112 2469999974 57999998 6999999
Q ss_pred CCCCCcCcCCcc
Q 002312 679 VGCLKKHKMADL 690 (937)
Q Consensus 679 v~CL~p~~~~~L 690 (937)
++|....+.-++
T Consensus 330 VtCArrag~f~~ 341 (669)
T COG5141 330 VTCARRAGYFDL 341 (669)
T ss_pred hhhhhhcchhhh
Confidence 999988765444
No 23
>TIGR01575 rimI ribosomal-protein-alanine acetyltransferase. Members of this model belong to the GCN5-related N-acetyltransferase (GNAT) superfamily. This model covers prokarotes and the archaea. The seed contains a characterized accession for Gram negative E. coli. An untraceable characterized accession (PIR|S66013) for Gram positive B. subtilis scores well (205.0) in the full alignment. Characterized members are lacking in the archaea. Noise cutoff (72.4) was set to exclude M. loti paralog of rimI. Trusted cutoff (80.0) was set at next highest scoring member in the mini-database.
Probab=98.55 E-value=4.1e-07 Score=84.65 Aligned_cols=80 Identities=18% Similarity=0.218 Sum_probs=68.5
Q ss_pred EEEeeCCeEEEEEEEEEeCCeeEEEeeeEeeccccCCChhHHHHHHHHHHhhhcCccEEEec---ChhhhHHHHHhccCc
Q 002312 808 AILTVNSSVVSAGILRVFGQEVAELPLVATSKINHGKGYFQLLFACIEKLLSFLRVKSIVLP---AAEEAESIWTDKFGF 884 (937)
Q Consensus 808 ~VL~~~~~vVsaA~lri~g~~vAEiplVAT~~~yRgqG~gr~L~~~IE~~l~~lgV~~LvLp---A~~ea~~~w~~kfGF 884 (937)
++++.++++||.+.++... ....+-.++|+++|||||+|+.|+.++++.+...|+.++++. ....+..||++ +||
T Consensus 34 ~~~~~~~~~vg~~~~~~~~-~~~~i~~~~v~~~~rg~G~g~~ll~~~~~~~~~~~~~~i~~~~~~~n~~~~~~y~~-~Gf 111 (131)
T TIGR01575 34 LLARIGGKVVGYAGVQIVL-DEAHILNIAVKPEYQGQGIGRALLRELIDEAKGRGVNEIFLEVRVSNIAAQALYKK-LGF 111 (131)
T ss_pred EEEecCCeEEEEEEEEecC-CCeEEEEEEECHHHcCCCHHHHHHHHHHHHHHHcCCCeEEEEEecccHHHHHHHHH-cCC
Confidence 3445689999999987644 457888899999999999999999999999999999999884 45567899999 999
Q ss_pred EEcCH
Q 002312 885 KKIDP 889 (937)
Q Consensus 885 ~~i~~ 889 (937)
+.++.
T Consensus 112 ~~~~~ 116 (131)
T TIGR01575 112 NEIAI 116 (131)
T ss_pred Ccccc
Confidence 98865
No 24
>TIGR00124 cit_ly_ligase [citrate (pro-3S)-lyase] ligase. ATP is cleaved to AMP and pyrophosphate during the reaction. The carboxyl end is homologous to a number of cytidyltransferases that also release pyrophosphate.
Probab=98.54 E-value=2.5e-07 Score=103.59 Aligned_cols=80 Identities=18% Similarity=0.225 Sum_probs=72.3
Q ss_pred eEEEEEeeCCeEEEEEEEEEeCCeeEEEeeeEeeccccCCChhHHHHHHHHHHhhhcCccEEEecChhhhHHHHHhccCc
Q 002312 805 MYCAILTVNSSVVSAGILRVFGQEVAELPLVATSKINHGKGYFQLLFACIEKLLSFLRVKSIVLPAAEEAESIWTDKFGF 884 (937)
Q Consensus 805 fY~~VL~~~~~vVsaA~lri~g~~vAEiplVAT~~~yRgqG~gr~L~~~IE~~l~~lgV~~LvLpA~~ea~~~w~~kfGF 884 (937)
-|+++++.+|++||+|++ .|. .|..|||+++|||+|+|+.||.++++.+.+.|+..++|.+.+....||.+ +||
T Consensus 31 d~~vv~~~~~~lVg~g~l--~g~---~ik~vaV~~~~rG~Glg~~L~~~L~~~a~~~G~~~l~l~Tk~~~~~fy~k-lGF 104 (332)
T TIGR00124 31 EIFIAVYEDEEIIGCGGI--AGN---VIKCVAIDESLRGEGLALQLMTELENLAYELGRFHLFIFTKPEYAALFEY-CGF 104 (332)
T ss_pred CEEEEEEECCEEEEEEEE--ecC---EEEEEEEcHHHcCCCHHHHHHHHHHHHHHHcCCCEEEEEECchHHHHHHH-cCC
Confidence 567778899999999997 342 48899999999999999999999999999999999999999999999988 999
Q ss_pred EEcCHH
Q 002312 885 KKIDPE 890 (937)
Q Consensus 885 ~~i~~~ 890 (937)
..+...
T Consensus 105 ~~i~~~ 110 (332)
T TIGR00124 105 KTLAEA 110 (332)
T ss_pred EEeeee
Confidence 998863
No 25
>PRK10975 TDP-fucosamine acetyltransferase; Provisional
Probab=98.54 E-value=3.7e-07 Score=93.36 Aligned_cols=84 Identities=12% Similarity=0.062 Sum_probs=71.1
Q ss_pred eEEEEEeeCCeEEEEEEEEEeCCeeEEEeeeEeeccccCCChhHHHHHHHHHHhhhcCccEEEecCh---hhhHHHHHhc
Q 002312 805 MYCAILTVNSSVVSAGILRVFGQEVAELPLVATSKINHGKGYFQLLFACIEKLLSFLRVKSIVLPAA---EEAESIWTDK 881 (937)
Q Consensus 805 fY~~VL~~~~~vVsaA~lri~g~~vAEiplVAT~~~yRgqG~gr~L~~~IE~~l~~lgV~~LvLpA~---~ea~~~w~~k 881 (937)
++.++...++++||.+.+...+...++|-.++|.++|||||+|+.|+..+++.+...|+.++++... ..+..||++
T Consensus 102 ~~~v~~~~~g~~vG~~~l~~~~~~~~~i~~~~V~p~~rg~Gig~~Ll~~~~~~a~~~g~~~i~l~v~~~N~~a~~~yek- 180 (194)
T PRK10975 102 QCLLLRDASGQIQGFVTLRELNDTDARIGLLAVFPGAQGRGIGARLMQAALNWCQARGLTRLRVATQMGNLAALRLYIR- 180 (194)
T ss_pred cEEEEEcCCCCEEEEEEEEecCCCceEEEEEEEChhhcCCCHHHHHHHHHHHHHHHcCCCEEEEEeCCCcHHHHHHHHH-
Confidence 3433444678999999998776677999999999999999999999999999999999999987644 457899988
Q ss_pred cCcEEcCH
Q 002312 882 FGFKKIDP 889 (937)
Q Consensus 882 fGF~~i~~ 889 (937)
+||+..+.
T Consensus 181 ~Gf~~~~~ 188 (194)
T PRK10975 181 SGANIEST 188 (194)
T ss_pred CCCeEeEE
Confidence 99997653
No 26
>TIGR02382 wecD_rffC TDP-D-fucosamine acetyltransferase. This model represents the WecD protein (Formerly RffC) for the biosynthesis of enterobacterial common antigen (ECA), an outer leaflet, outer membrane glycolipid with a trisaccharide repeat unit. WecD is a member of the GNAT family of acetytransferases (pfam00583).
Probab=98.53 E-value=4e-07 Score=93.15 Aligned_cols=80 Identities=11% Similarity=0.031 Sum_probs=69.9
Q ss_pred EEeeCCeEEEEEEEEEeCCeeEEEeeeEeeccccCCChhHHHHHHHHHHhhhcCccEEEecC---hhhhHHHHHhccCcE
Q 002312 809 ILTVNSSVVSAGILRVFGQEVAELPLVATSKINHGKGYFQLLFACIEKLLSFLRVKSIVLPA---AEEAESIWTDKFGFK 885 (937)
Q Consensus 809 VL~~~~~vVsaA~lri~g~~vAEiplVAT~~~yRgqG~gr~L~~~IE~~l~~lgV~~LvLpA---~~ea~~~w~~kfGF~ 885 (937)
+...+|++||.+.++......++|-.++|.++|||||+|+.|+.++++.+..+|+.+|.+.. -..|..||.+ +||+
T Consensus 103 ~~~~~g~iiG~i~l~~~~~~~~~i~~l~V~p~~rGkG~G~~ll~~~~~~a~~~g~~~I~l~v~~~N~~A~~~Y~k-lGF~ 181 (191)
T TIGR02382 103 LRDASGDPRGYVTLRELNDTDARIGLLAVFPGAQSRGIGAELMQTALNWCYARGLTRLRVATQMGNTAALRLYIR-SGAN 181 (191)
T ss_pred EEccCCeEEEEEEEEecCCCceEEEEEEECHHHcCCCHHHHHHHHHHHHHHHcCCCEEEEEeCCCCHHHHHHHHH-cCCc
Confidence 34568999999999877666789999999999999999999999999999999999999874 3458999998 9998
Q ss_pred EcCH
Q 002312 886 KIDP 889 (937)
Q Consensus 886 ~i~~ 889 (937)
..+.
T Consensus 182 ~~~~ 185 (191)
T TIGR02382 182 IEST 185 (191)
T ss_pred cccc
Confidence 7654
No 27
>KOG0954 consensus PHD finger protein [General function prediction only]
Probab=98.52 E-value=5.5e-08 Score=114.49 Aligned_cols=154 Identities=23% Similarity=0.464 Sum_probs=94.2
Q ss_pred ccccCCcccccccCccCCcCcccccCCCCceecccCCCcccccccCCCCCCCCCCccccccccccccccccccccccccc
Q 002312 540 GYKNGLGIICHCCNSEVSPSQFEAHADGGNLLPCDGCPRAFHKECASLSSIPQGDWYCKYCQNMFERKRFLQHDANAVEA 619 (937)
Q Consensus 540 G~k~~~~i~C~~C~~eiSpS~FE~HAdgG~Ll~CDgCp~afH~~CL~L~~vPeG~W~Cp~C~~~~~~ek~l~~n~naia~ 619 (937)
|+...+..+|.+|....+. ++.+|++||.|....|+.|+++.++|+|.|.|..|.-.+++.-.+.++....-.
T Consensus 265 gie~dedviCDvCrspD~e-------~~neMVfCd~Cn~cVHqaCyGIle~p~gpWlCr~Calg~~ppCvLCPkkGGamK 337 (893)
T KOG0954|consen 265 GIEYDEDVICDVCRSPDSE-------EANEMVFCDKCNICVHQACYGILEVPEGPWLCRTCALGIEPPCVLCPKKGGAMK 337 (893)
T ss_pred eeeccccceeceecCCCcc-------ccceeEEeccchhHHHHhhhceeecCCCCeeehhccccCCCCeeeccccCCccc
Confidence 3444578899999964332 578999999999999999999999999999999997665443333322211100
Q ss_pred Cccccc--------cchhhhhhhhhhhhccc--------cccCCccccccCCCCCCCCCCCCceeeCC--CCCCcCCCCC
Q 002312 620 GRVSGV--------DSVEQITKRCIRIVKNL--------EAELSGCLLCRGCDFSKSGFGPRTILLCD--QCEREFHVGC 681 (937)
Q Consensus 620 gr~~Gv--------d~ieqi~~R~iR~vkd~--------e~e~~~C~vC~~~df~~sgf~~~tLL~CD--qCdr~yHv~C 681 (937)
....|. -||.++...+....+.+ ......|.+|+.. -+..|+|. .|...||+.|
T Consensus 338 ~~~sgT~wAHvsCALwIPEVsie~~ekmePItkfs~IpesRwslvC~LCk~k--------~GACIqCs~k~C~t~fHv~C 409 (893)
T KOG0954|consen 338 PTKSGTKWAHVSCALWIPEVSIECPEKMEPITKFSHIPESRWSLVCNLCKVK--------SGACIQCSNKTCRTAFHVTC 409 (893)
T ss_pred ccCCCCeeeEeeeeeccceeeccCHhhcCcccccCCCcHHHHHHHHHHhccc--------CcceEEecccchhhhccchh
Confidence 000111 12333322221111000 1112349999863 46789997 8999999999
Q ss_pred CCcCcCCcc---cCC--CCCcceecCCccchhH
Q 002312 682 LKKHKMADL---REL--PKGKWFCCMDCSRINS 709 (937)
Q Consensus 682 L~p~~~~~L---~ev--P~g~WfCc~~C~~I~~ 709 (937)
...+|+..- .+. -...-|| ..|..+..
T Consensus 410 A~~aG~~~~~~~~~~D~v~~~s~c-~khs~~~~ 441 (893)
T KOG0954|consen 410 AFEAGLEMKTILKENDEVKFKSYC-SKHSDHRE 441 (893)
T ss_pred hhhcCCeeeeeeccCCchhheeec-cccccccc
Confidence 999875321 111 1245688 66766553
No 28
>KOG0955 consensus PHD finger protein BR140/LIN-49 [General function prediction only]
Probab=98.51 E-value=6e-08 Score=120.24 Aligned_cols=127 Identities=23% Similarity=0.562 Sum_probs=80.7
Q ss_pred CCcccccccCccCCcCcccccCCCCceecccCCCcccccccCCCCCCCCCCcccccccccccccccccccccccccCccc
Q 002312 544 GLGIICHCCNSEVSPSQFEAHADGGNLLPCDGCPRAFHKECASLSSIPQGDWYCKYCQNMFERKRFLQHDANAVEAGRVS 623 (937)
Q Consensus 544 ~~~i~C~~C~~eiSpS~FE~HAdgG~Ll~CDgCp~afH~~CL~L~~vPeG~W~Cp~C~~~~~~ek~l~~n~naia~gr~~ 623 (937)
..+.+|.+|..-..- ....+++||+|..++|+.|+++.-+|+|.|+|..|....++. +.........|++.
T Consensus 217 ~~D~~C~iC~~~~~~-------n~n~ivfCD~Cnl~VHq~Cygi~~ipeg~WlCr~Cl~s~~~~--v~c~~cp~~~gAFk 287 (1051)
T KOG0955|consen 217 EEDAVCCICLDGECQ-------NSNVIVFCDGCNLAVHQECYGIPFIPEGQWLCRRCLQSPQRP--VRCLLCPSKGGAFK 287 (1051)
T ss_pred CCCccceeecccccC-------CCceEEEcCCCcchhhhhccCCCCCCCCcEeehhhccCcCcc--cceEeccCCCCcce
Confidence 567899999853111 346899999999999999999999999999999997653322 11111111122222
Q ss_pred ccc-----------chhhhh---------hhhhhhhccccccCCccccccCCCCCCCCCCCCceeeCC--CCCCcCCCCC
Q 002312 624 GVD-----------SVEQIT---------KRCIRIVKNLEAELSGCLLCRGCDFSKSGFGPRTILLCD--QCEREFHVGC 681 (937)
Q Consensus 624 Gvd-----------~ieqi~---------~R~iR~vkd~e~e~~~C~vC~~~df~~sgf~~~tLL~CD--qCdr~yHv~C 681 (937)
..+ +++++- ...++.+....+ .-.|++|+.. +.+..++|. .|-.+||++|
T Consensus 288 qt~dgrw~Hv~caiwipev~F~nt~~~E~I~~i~~i~~aRw-kL~cy~cK~~-------~~gaciqcs~~~c~~a~hvtc 359 (1051)
T KOG0955|consen 288 QTDDGRWAHVVCAIWIPEVSFANTVFLEPIDSIENIPPARW-KLTCYICKQK-------GLGACIQCSKANCYTAFHVTC 359 (1051)
T ss_pred eccCCceeeeehhhcccccccccchhhccccchhcCcHhhh-hceeeeeccC-------CCCcceecchhhhhhhhhhhh
Confidence 211 111110 011222221222 3469999975 257889998 7999999999
Q ss_pred CCcCcC
Q 002312 682 LKKHKM 687 (937)
Q Consensus 682 L~p~~~ 687 (937)
....|+
T Consensus 360 a~~agl 365 (1051)
T KOG0955|consen 360 ARRAGL 365 (1051)
T ss_pred HhhcCc
Confidence 988764
No 29
>COG2153 ElaA Predicted acyltransferase [General function prediction only]
Probab=98.50 E-value=2.8e-07 Score=91.38 Aligned_cols=84 Identities=23% Similarity=0.213 Sum_probs=72.4
Q ss_pred EEEEeeCCeEEEEEEEEEeCCeeEE--EeeeEeeccccCCChhHHHHHHHHHHhhhcC-ccEEEecChhhhHHHHHhccC
Q 002312 807 CAILTVNSSVVSAGILRVFGQEVAE--LPLVATSKINHGKGYFQLLFACIEKLLSFLR-VKSIVLPAAEEAESIWTDKFG 883 (937)
Q Consensus 807 ~~VL~~~~~vVsaA~lri~g~~vAE--iplVAT~~~yRgqG~gr~L~~~IE~~l~~lg-V~~LvLpA~~ea~~~w~~kfG 883 (937)
-++...+|++|++|+|-..+.+..+ |.+|+|.+++||+|+|+.||....+.+.... =+.+.|.|+..++.||.. ||
T Consensus 52 l~~~~~~g~LvAyaRLl~~~~~~~~~~iGRV~v~~~~RG~glG~~Lm~~AL~~~~~~~p~~~v~l~AQahLq~fYa~-~G 130 (155)
T COG2153 52 LLGWTPDGELVAYARLLPPGAEYEEVSIGRVIVSPAARGQGLGQQLMEKALETAGREWPDKPVYLGAQAHLQDFYAS-FG 130 (155)
T ss_pred EEEEcCCCeEEEEEecCCCCCCcCceeeeeEEECHhhhccchhHHHHHHHHHHHHhhCCCCCeEEehHHHHHHHHHH-hC
Confidence 3333449999999999887776666 9999999999999999999998888777766 567999999999999999 99
Q ss_pred cEEcCHHH
Q 002312 884 FKKIDPEL 891 (937)
Q Consensus 884 F~~i~~~e 891 (937)
|.+.+++-
T Consensus 131 Fv~~~e~y 138 (155)
T COG2153 131 FVRVGEEY 138 (155)
T ss_pred cEEcCchh
Confidence 99999854
No 30
>PRK05279 N-acetylglutamate synthase; Validated
Probab=98.49 E-value=4.4e-07 Score=104.79 Aligned_cols=85 Identities=18% Similarity=0.267 Sum_probs=73.4
Q ss_pred EEEeeCCeEEEEEEEEEeC-CeeEEEeeeEeeccccCCChhHHHHHHHHHHhhhcCccEEEecChhhhHHHHHhccCcEE
Q 002312 808 AILTVNSSVVSAGILRVFG-QEVAELPLVATSKINHGKGYFQLLFACIEKLLSFLRVKSIVLPAAEEAESIWTDKFGFKK 886 (937)
Q Consensus 808 ~VL~~~~~vVsaA~lri~g-~~vAEiplVAT~~~yRgqG~gr~L~~~IE~~l~~lgV~~LvLpA~~ea~~~w~~kfGF~~ 886 (937)
++++.++++||++.+..+. ...++|-.++|+++|||||+|++||+++++.++..|+.++++.+ ..|..||.+ +||+.
T Consensus 337 ~va~~dg~iVG~~~~~~~~~~~~~~I~~l~V~p~~Rg~GiG~~Ll~~l~~~a~~~g~~~l~l~~-~~a~~fY~k-~GF~~ 414 (441)
T PRK05279 337 TVIERDGLIIGCAALYPFPEEKMGEMACLAVHPDYRGSGRGERLLKRIEQRARQLGLKRLFVLT-TRTAHWFLE-RGFVP 414 (441)
T ss_pred EEEEECCEEEEEEEEEEcCCCCeEEEEEEEECHHHcCCCHHHHHHHHHHHHHHHcCCCEEEEec-chHHHHHHH-CcCEE
Confidence 3557899999999887654 36899999999999999999999999999999999999998765 468899988 99999
Q ss_pred cCHHHHHH
Q 002312 887 IDPELLSI 894 (937)
Q Consensus 887 i~~~el~~ 894 (937)
++..++..
T Consensus 415 ~g~~~~~~ 422 (441)
T PRK05279 415 VDVDDLPE 422 (441)
T ss_pred CChhhCcH
Confidence 99855443
No 31
>PRK09491 rimI ribosomal-protein-alanine N-acetyltransferase; Provisional
Probab=98.48 E-value=1e-06 Score=85.43 Aligned_cols=84 Identities=20% Similarity=0.196 Sum_probs=70.8
Q ss_pred ceEEEEEeeCCeEEEEEEEEEeCCeeEEEeeeEeeccccCCChhHHHHHHHHHHhhhcCccEEEecC---hhhhHHHHHh
Q 002312 804 GMYCAILTVNSSVVSAGILRVFGQEVAELPLVATSKINHGKGYFQLLFACIEKLLSFLRVKSIVLPA---AEEAESIWTD 880 (937)
Q Consensus 804 GfY~~VL~~~~~vVsaA~lri~g~~vAEiplVAT~~~yRgqG~gr~L~~~IE~~l~~lgV~~LvLpA---~~ea~~~w~~ 880 (937)
+|+.+++..++++||.+.++.... .+++-.++|.++|||||+|+.|+..+++.+...|+..+++.+ -..+..+|++
T Consensus 39 ~~~~~~~~~~~~~vG~~~~~~~~~-~~~~~~i~v~~~~rg~G~g~~ll~~~~~~~~~~~~~~~~~~~~~~N~~a~~~y~k 117 (146)
T PRK09491 39 RYLNLKLTVNGQMAAFAITQVVLD-EATLFNIAVDPDYQRQGLGRALLEHLIDELEKRGVATLWLEVRASNAAAIALYES 117 (146)
T ss_pred CceEEEEEECCeEEEEEEEEeecC-ceEEEEEEECHHHccCCHHHHHHHHHHHHHHHCCCcEEEEEEccCCHHHHHHHHH
Confidence 455556678899999999876554 466788999999999999999999999999999999988753 4568899999
Q ss_pred ccCcEEcCH
Q 002312 881 KFGFKKIDP 889 (937)
Q Consensus 881 kfGF~~i~~ 889 (937)
+||+..+.
T Consensus 118 -~Gf~~~~~ 125 (146)
T PRK09491 118 -LGFNEVTI 125 (146)
T ss_pred -cCCEEeee
Confidence 99998775
No 32
>PRK12308 bifunctional argininosuccinate lyase/N-acetylglutamate synthase; Provisional
Probab=98.46 E-value=4.9e-07 Score=108.69 Aligned_cols=82 Identities=15% Similarity=0.203 Sum_probs=73.4
Q ss_pred EEEeeCCeEEEEEEEEEeCCeeEEEeeeEeeccccCCChhHHHHHHHHHHhhhcCccEEEecChhhhHHHHHhccCcEEc
Q 002312 808 AILTVNSSVVSAGILRVFGQEVAELPLVATSKINHGKGYFQLLFACIEKLLSFLRVKSIVLPAAEEAESIWTDKFGFKKI 887 (937)
Q Consensus 808 ~VL~~~~~vVsaA~lri~g~~vAEiplVAT~~~yRgqG~gr~L~~~IE~~l~~lgV~~LvLpA~~ea~~~w~~kfGF~~i 887 (937)
+|++.+|++||.+.+.....+.++|-.++|+|+|||||+|+.||+.+++.++..|++.|++.+. +..||++ +||+..
T Consensus 506 ~Va~~~g~IVG~~~l~~~~~~~~~I~~i~V~P~~rGkGIGk~Ll~~l~~~ak~~g~~~i~l~~~--a~~FYek-~GF~~~ 582 (614)
T PRK12308 506 AVAEHHGEVTGCASLYIYDSGLAEIRSLGVEAGWQVQGQGSALVQYLVEKARQMAIKKVFVLTR--VPEFFMK-QGFSPT 582 (614)
T ss_pred EEEEECCEEEEEEEEEEcCCCeEEEEEEEECHHHcCCCHHHHHHHHHHHHHHHCCCCEEEEeeC--cHHHHHH-CCCEEC
Confidence 4567899999999998877778999999999999999999999999999999999999988653 5789998 999999
Q ss_pred CHHHH
Q 002312 888 DPELL 892 (937)
Q Consensus 888 ~~~el 892 (937)
+...+
T Consensus 583 ~~~~~ 587 (614)
T PRK12308 583 SKSLL 587 (614)
T ss_pred CcccC
Confidence 98654
No 33
>KOG4299 consensus PHD Zn-finger protein [General function prediction only]
Probab=98.43 E-value=1.4e-07 Score=110.41 Aligned_cols=59 Identities=32% Similarity=0.841 Sum_probs=44.4
Q ss_pred eeccccccCCc--ccccccCccCCcCcccccCCCCceecccCCCcccccccCC----CCCCCCCCccccccccc
Q 002312 536 KLLEGYKNGLG--IICHCCNSEVSPSQFEAHADGGNLLPCDGCPRAFHKECAS----LSSIPQGDWYCKYCQNM 603 (937)
Q Consensus 536 ~l~~G~k~~~~--i~C~~C~~eiSpS~FE~HAdgG~Ll~CDgCp~afH~~CL~----L~~vPeG~W~Cp~C~~~ 603 (937)
...++++.-.. ++|..|++.- .| .+++|||+||++||+.||+ .+.+|.|.|+|+.|...
T Consensus 241 ~~~D~~~~~~~~~~fCsaCn~~~---~F------~~~i~CD~Cp~sFH~~CLePPl~~eniP~g~W~C~ec~~k 305 (613)
T KOG4299|consen 241 RERDKNISVEDIEDFCSACNGSG---LF------NDIICCDGCPRSFHQTCLEPPLEPENIPPGSWFCPECKIK 305 (613)
T ss_pred hhhccccccCCHHHHHHHhCCcc---cc------ccceeecCCchHHHHhhcCCCCCcccCCCCccccCCCeee
Confidence 33445554444 4999999521 11 4569999999999999996 45899999999999865
No 34
>TIGR03827 GNAT_ablB putative beta-lysine N-acetyltransferase. Members of this protein family are GNAT family acetyltransferases, based on a seed alignment in which every member is associated with a lysine 2,3-aminomutase family protein, usually as the adjacent gene. This family includes AblB, the enzyme beta-lysine acetyltransferase that completes the two-step synthesis of the osmolyte (compatible solute) N-epsilon-acetyl-beta-lysine; all members of the family may have this function. Note that N-epsilon-acetyl-beta-lysine has been observed only in methanogenic archaea (e.g. Methanosarcina) but that this model, paired with TIGR03820, suggests a much broader distribution.
Probab=98.43 E-value=7.1e-07 Score=96.40 Aligned_cols=84 Identities=15% Similarity=0.146 Sum_probs=70.8
Q ss_pred eEEEEEeeCCeEEEEEEEEEe-CCeeEEEeeeEeeccccCCChhHHHHHHHHHHhhhcCccEEEecChhh---hHHHHHh
Q 002312 805 MYCAILTVNSSVVSAGILRVF-GQEVAELPLVATSKINHGKGYFQLLFACIEKLLSFLRVKSIVLPAAEE---AESIWTD 880 (937)
Q Consensus 805 fY~~VL~~~~~vVsaA~lri~-g~~vAEiplVAT~~~yRgqG~gr~L~~~IE~~l~~lgV~~LvLpA~~e---a~~~w~~ 880 (937)
.+.++++.+|++||.+.+.+. +...+||--++|+|+|||||+|+.||..+++.++..|++++++.+... +..+|.+
T Consensus 158 ~~~~v~~~~g~iVG~~~~~~~~~~~~~eI~~i~V~P~yRG~GiG~~Ll~~l~~~a~~~g~~~l~~~~~~~n~~a~~ly~k 237 (266)
T TIGR03827 158 VVYFGVEDGGKIIALASAEMDPENGNAEMTDFATLPEYRGKGLAKILLAAMEKEMKEKGIRTAYTIARASSYGMNITFAR 237 (266)
T ss_pred cEEEEEEECCEEEEEEEEecCCCCCcEEEEEEEECHHHcCCCHHHHHHHHHHHHHHHCCCcEEEeehhhcchhHHHHHHH
Confidence 444566789999999998553 346799999999999999999999999999999999999999987665 3568877
Q ss_pred ccCcEEcCH
Q 002312 881 KFGFKKIDP 889 (937)
Q Consensus 881 kfGF~~i~~ 889 (937)
+||+..+.
T Consensus 238 -~GF~~~G~ 245 (266)
T TIGR03827 238 -LGYAYGGT 245 (266)
T ss_pred -cCCccccE
Confidence 99997665
No 35
>PRK13688 hypothetical protein; Provisional
Probab=98.38 E-value=1.3e-06 Score=87.96 Aligned_cols=75 Identities=19% Similarity=0.283 Sum_probs=59.7
Q ss_pred EeeCCeEEEEEEEEEe----------CCeeEEEeeeEeeccccCCChhHHHHHHHHHHhhhcCccEEEecChhhhHHHHH
Q 002312 810 LTVNSSVVSAGILRVF----------GQEVAELPLVATSKINHGKGYFQLLFACIEKLLSFLRVKSIVLPAAEEAESIWT 879 (937)
Q Consensus 810 L~~~~~vVsaA~lri~----------g~~vAEiplVAT~~~yRgqG~gr~L~~~IE~~l~~lgV~~LvLpA~~ea~~~w~ 879 (937)
++.++++||++.+... ..+.++|-.++|+++|||||+|++||+.+++. ++. +.+.+...|..||.
T Consensus 50 ~~~~~~~VG~~~l~~~dg~~~~~~~~~~~~~~L~~l~V~p~~rgkGiG~~Ll~~a~~~----~~~-~~~~~~~~a~~FY~ 124 (156)
T PRK13688 50 IYYGDSLVARMSLYKKGGVEEPYFEDTQDYLELWKLEVLPKYQNRGYGEMLVDFAKSF----QLP-IKTIARNKSKDFWL 124 (156)
T ss_pred EEECCEEEEEEEEEecCCcccccccCCCCeEEEEEEEECHHHcCCCHHHHHHHHHHHh----CCe-EEEEeccchHHHHH
Confidence 4678999998887542 24678999999999999999999999876543 443 44556677899999
Q ss_pred hccCcEEcCHH
Q 002312 880 DKFGFKKIDPE 890 (937)
Q Consensus 880 ~kfGF~~i~~~ 890 (937)
+ +||..++..
T Consensus 125 k-~GF~~~~~~ 134 (156)
T PRK13688 125 K-LGFTPVEYK 134 (156)
T ss_pred h-CCCEEeEEe
Confidence 9 999988765
No 36
>PRK10140 putative acetyltransferase YhhY; Provisional
Probab=98.37 E-value=2.1e-06 Score=83.44 Aligned_cols=85 Identities=18% Similarity=0.234 Sum_probs=68.7
Q ss_pred eEEEEEeeCCeEEEEEEEEEeC----CeeEEEeeeEeeccccCCChhHHHHHHHHHHhhh-cCccEEEecCh---hhhHH
Q 002312 805 MYCAILTVNSSVVSAGILRVFG----QEVAELPLVATSKINHGKGYFQLLFACIEKLLSF-LRVKSIVLPAA---EEAES 876 (937)
Q Consensus 805 fY~~VL~~~~~vVsaA~lri~g----~~vAEiplVAT~~~yRgqG~gr~L~~~IE~~l~~-lgV~~LvLpA~---~ea~~ 876 (937)
.+.++...++++||.+.+.... ...+++. +++.++|||||+|+.|++.+++.+.. +|..++.+... ..|..
T Consensus 51 ~~~~v~~~~~~~vG~~~~~~~~~~~~~~~~~~~-~~v~p~~rg~Gig~~ll~~l~~~~~~~~~~~~i~l~v~~~N~~a~~ 129 (162)
T PRK10140 51 IKQLVACIDGDVVGHLTIDVQQRPRRSHVADFG-ICVDSRWKNRGVASALMREMIEMCDNWLRVDRIELTVFVDNAPAIK 129 (162)
T ss_pred cEEEEEEECCEEEEEEEEecccccccceEEEEE-EEECHHHcCCCHHHHHHHHHHHHHHhhCCccEEEEEEEcCCHHHHH
Confidence 4556677889999999987542 2356664 89999999999999999999999988 79888776653 56788
Q ss_pred HHHhccCcEEcCHHH
Q 002312 877 IWTDKFGFKKIDPEL 891 (937)
Q Consensus 877 ~w~~kfGF~~i~~~e 891 (937)
+|++ +||+..+...
T Consensus 130 ~y~k-~GF~~~g~~~ 143 (162)
T PRK10140 130 VYKK-YGFEIEGTGK 143 (162)
T ss_pred HHHH-CCCEEEeecc
Confidence 9998 9999887643
No 37
>KOG0383 consensus Predicted helicase [General function prediction only]
Probab=98.36 E-value=1.8e-07 Score=112.40 Aligned_cols=156 Identities=26% Similarity=0.494 Sum_probs=100.9
Q ss_pred CCCcccccccCC--CCCCCCCCcccccccccccccccccccccccccCccccccchhhhhhhhhhhhccccccCCccccc
Q 002312 575 GCPRAFHKECAS--LSSIPQGDWYCKYCQNMFERKRFLQHDANAVEAGRVSGVDSVEQITKRCIRIVKNLEAELSGCLLC 652 (937)
Q Consensus 575 gCp~afH~~CL~--L~~vPeG~W~Cp~C~~~~~~ek~l~~n~naia~gr~~Gvd~ieqi~~R~iR~vkd~e~e~~~C~vC 652 (937)
.|++.||..|++ +..-|+++|.||.|....-. +...+. .-...+...|.+|
T Consensus 1 ~~~r~~~~~~~~p~~~~~~~~~~k~~~~e~~~~~------------------~~~~~~---------~~~~~~~e~c~ic 53 (696)
T KOG0383|consen 1 TCPRAYHRVCLDPKLKEEPEMDPKCPGCESSSAQ------------------VEAKDD---------DWDDAEQEACRIC 53 (696)
T ss_pred CCCcccCcCCCCcccccCCcCCccCcchhhcccc------------------cccccC---------Ccchhhhhhhhhh
Confidence 489999999997 55667899999999742100 000000 0012344679999
Q ss_pred cCCCCCCCCCCCCceeeCCCCCCcCCCCCCCcCcCCcccCCCCCcceecCCcc--chhHHHHHhhhhc--cccCc-hhhH
Q 002312 653 RGCDFSKSGFGPRTILLCDQCEREFHVGCLKKHKMADLRELPKGKWFCCMDCS--RINSVLQNLLVQE--AEKLP-EFHL 727 (937)
Q Consensus 653 ~~~df~~sgf~~~tLL~CDqCdr~yHv~CL~p~~~~~L~evP~g~WfCc~~C~--~I~~~LqkLVa~g--~e~lp-~sll 727 (937)
.+ .+++|.||.|..+||..|+.+ ++...|.++|.| +.|. ......++++.+. +.+.+ ...-
T Consensus 54 ~~---------~g~~l~c~tC~~s~h~~cl~~----pl~~~p~~~~~c-~Rc~~p~~~~k~~~il~~~~~~~~~~~~~~~ 119 (696)
T KOG0383|consen 54 AD---------GGELLWCDTCPASFHASCLGP----PLTPQPNGEFIC-PRCFCPKNAGKIEKILGWRWKPTPKPREGNQ 119 (696)
T ss_pred cC---------CCcEEEeccccHHHHHHccCC----CCCcCCccceee-eeeccCCCcccccccceeEecCCCCccccCc
Confidence 85 468999999999999999987 788889888999 4773 2223455665543 22222 1111
Q ss_pred HHhhhhccCccccccccCcceeEccCCCCChhhHHHHHHHHHhhh
Q 002312 728 NAIKKYAGNSLETVSDIDVRWRLLSGKAATPETRLLLSQAVAIFH 772 (937)
Q Consensus 728 ~~I~k~~e~gle~~~~~dikWqLLsgk~~s~e~~~~La~AL~If~ 772 (937)
+.+. +.....-..+.+.++|+.+++.++.|.....+...+..+-
T Consensus 120 ~~~~-~~~~~~~~~re~~vk~qg~s~~~c~~~~e~~~q~~~~~~~ 163 (696)
T KOG0383|consen 120 GVIS-PRRSNGIVEREFFVKWQGLSYWHCSWKSELLLQNPLNTLP 163 (696)
T ss_pred CccC-CcccccchhhhcccccccCCccchhHHHHHHhhhhcccch
Confidence 1111 1111122356789999999999999887777765555553
No 38
>PRK09831 putative acyltransferase; Provisional
Probab=98.34 E-value=1.4e-06 Score=85.05 Aligned_cols=73 Identities=14% Similarity=0.156 Sum_probs=61.7
Q ss_pred EEEeeCCeEEEEEEEEEeCCeeEEEeeeEeeccccCCChhHHHHHHHHHHhhhcCccEEEecChhhhHHHHHhccCcEEc
Q 002312 808 AILTVNSSVVSAGILRVFGQEVAELPLVATSKINHGKGYFQLLFACIEKLLSFLRVKSIVLPAAEEAESIWTDKFGFKKI 887 (937)
Q Consensus 808 ~VL~~~~~vVsaA~lri~g~~vAEiplVAT~~~yRgqG~gr~L~~~IE~~l~~lgV~~LvLpA~~ea~~~w~~kfGF~~i 887 (937)
+|+..+|++||.+.+.. +.+..++|.++|||||+|++||..+++.+.. +.+.+...|..||.+ +||..+
T Consensus 56 ~v~~~~~~iiG~~~~~~-----~~i~~~~v~p~~~g~GiG~~Ll~~~~~~~~~-----l~v~~~~~a~~~Y~k-~Gf~~~ 124 (147)
T PRK09831 56 RVAVINAQPVGFITCIE-----HYIDMLFVDPEYTRRGVASALLKPLIKSESE-----LTVDASITAKPFFER-YGFQTV 124 (147)
T ss_pred EEEEECCEEEEEEEehh-----ceeeeEEECHHHcCCCHHHHHHHHHHHHhhh-----eEeecchhhHHHHHH-CCCEEe
Confidence 34578899999988742 4677899999999999999999999999876 455666789999999 999999
Q ss_pred CHHH
Q 002312 888 DPEL 891 (937)
Q Consensus 888 ~~~e 891 (937)
+...
T Consensus 125 g~~~ 128 (147)
T PRK09831 125 KQQR 128 (147)
T ss_pred eccc
Confidence 8865
No 39
>KOG4299 consensus PHD Zn-finger protein [General function prediction only]
Probab=98.33 E-value=3.1e-07 Score=107.54 Aligned_cols=50 Identities=38% Similarity=0.963 Sum_probs=41.7
Q ss_pred ccccccCCCCCCCCCCCCceeeCCCCCCcCCCCCCCcCcCCcccCCCCCcceecCCccc
Q 002312 648 GCLLCRGCDFSKSGFGPRTILLCDQCEREFHVGCLKKHKMADLRELPKGKWFCCMDCSR 706 (937)
Q Consensus 648 ~C~vC~~~df~~sgf~~~tLL~CDqCdr~yHv~CL~p~~~~~L~evP~g~WfCc~~C~~ 706 (937)
+|..|+..+ .| ..+|.||.|++.||+.||.|+- ..+.+|.|.||| +.|..
T Consensus 255 fCsaCn~~~----~F--~~~i~CD~Cp~sFH~~CLePPl--~~eniP~g~W~C-~ec~~ 304 (613)
T KOG4299|consen 255 FCSACNGSG----LF--NDIICCDGCPRSFHQTCLEPPL--EPENIPPGSWFC-PECKI 304 (613)
T ss_pred HHHHhCCcc----cc--ccceeecCCchHHHHhhcCCCC--CcccCCCCcccc-CCCee
Confidence 799999764 34 5789999999999999999841 367899999999 88963
No 40
>PHA00673 acetyltransferase domain containing protein
Probab=98.32 E-value=3.5e-06 Score=85.07 Aligned_cols=84 Identities=13% Similarity=0.085 Sum_probs=73.3
Q ss_pred eEEEEEeeCCeEEEEEEEEEeC------CeeEEEeeeEeeccccCCChhHHHHHHHHHHhhhcCccEEEecChhh--hHH
Q 002312 805 MYCAILTVNSSVVSAGILRVFG------QEVAELPLVATSKINHGKGYFQLLFACIEKLLSFLRVKSIVLPAAEE--AES 876 (937)
Q Consensus 805 fY~~VL~~~~~vVsaA~lri~g------~~vAEiplVAT~~~yRgqG~gr~L~~~IE~~l~~lgV~~LvLpA~~e--a~~ 876 (937)
-..+|.+.+|++||++.+.+.. ...+.|-.|-|++++||||+|++||..+++.++..|...|.+.|.++ .+.
T Consensus 55 ~~llVa~~~g~vVG~~~l~~~p~l~~~~~~~~~Ie~l~V~~~~RGqGIG~~Ll~~A~~~Ar~~Gc~~lyis~~p~~~tv~ 134 (154)
T PHA00673 55 AHFLGVFRGEELVGFACLLVTPVPHFKGQLIGTTESIFVAAAHRPGGAGMALLRATEALARDLGATGLYVSGPTEGRLVQ 134 (154)
T ss_pred cEEEEEEECCEEEEEEEEEEecCCccCCccEEEEEEEEEChhccCCCHHHHHHHHHHHHHHHCCCCEEEEecCCCccchH
Confidence 4455667899999999988754 35778999999999999999999999999999999999999999886 689
Q ss_pred HHHhccCcEEcCH
Q 002312 877 IWTDKFGFKKIDP 889 (937)
Q Consensus 877 ~w~~kfGF~~i~~ 889 (937)
||.+ .|++....
T Consensus 135 fy~~-~g~~~~~~ 146 (154)
T PHA00673 135 LLPA-AGYRETNR 146 (154)
T ss_pred HHHh-CCchhhch
Confidence 9999 99986543
No 41
>KOG4443 consensus Putative transcription factor HALR/MLL3, involved in embryonic development [General function prediction only]
Probab=98.26 E-value=3.3e-07 Score=107.53 Aligned_cols=79 Identities=32% Similarity=0.924 Sum_probs=64.7
Q ss_pred CCCceecccCCCcccccccCCC--CC-CCCCCcccccccccccccccccccccccccCccccccchhhhhhhhhhhhccc
Q 002312 566 DGGNLLPCDGCPRAFHKECASL--SS-IPQGDWYCKYCQNMFERKRFLQHDANAVEAGRVSGVDSVEQITKRCIRIVKNL 642 (937)
Q Consensus 566 dgG~Ll~CDgCp~afH~~CL~L--~~-vPeG~W~Cp~C~~~~~~ek~l~~n~naia~gr~~Gvd~ieqi~~R~iR~vkd~ 642 (937)
-.|.|+-|..|...||.+|+.+ .. +-.+-|.|+.|+.
T Consensus 31 ~ag~m~ac~~c~~~yH~~cvt~~~~~~~l~~gWrC~~crv---------------------------------------- 70 (694)
T KOG4443|consen 31 RAGRLLACSDCGQKYHPYCVTSWAQHAVLSGGWRCPSCRV---------------------------------------- 70 (694)
T ss_pred ccCcchhhhhhcccCCcchhhHHHhHHHhcCCcccCCcee----------------------------------------
Confidence 3567999999999999999962 11 1234499999983
Q ss_pred cccCCccccccCCCCCCCCCCCCceeeCCCCCCcCCCCCCCcCcCCcccCCCCCccee
Q 002312 643 EAELSGCLLCRGCDFSKSGFGPRTILLCDQCEREFHVGCLKKHKMADLRELPKGKWFC 700 (937)
Q Consensus 643 e~e~~~C~vC~~~df~~sgf~~~tLL~CDqCdr~yHv~CL~p~~~~~L~evP~g~WfC 700 (937)
|..|+..+ ++...++|+.|+-.||.+|..| +++.+|.|.|+|
T Consensus 71 ------Ce~c~~~g------D~~kf~~Ck~cDvsyh~yc~~P----~~~~v~sg~~~c 112 (694)
T KOG4443|consen 71 ------CEACGTTG------DPKKFLLCKRCDVSYHCYCQKP----PNDKVPSGPWLC 112 (694)
T ss_pred ------eeeccccC------CcccccccccccccccccccCC----ccccccCccccc
Confidence 77787432 6788999999999999999998 788999999999
No 42
>TIGR03448 mycothiol_MshD mycothiol biosynthesis acetyltransferase. Members of this family are MshD, the acetyltransferase that catalyzes the final step of mycothiol biosynthesis in various members of the Actinomyctes, Mycothiol replaces glutathione in these species.
Probab=98.22 E-value=6.7e-06 Score=88.78 Aligned_cols=81 Identities=7% Similarity=0.000 Sum_probs=65.0
Q ss_pred EEEEEeeCCeEEEEEEEEEeCCeeEEEeeeEeeccccCCChhHHHHHHHHHHhhhcCccEEEecCh-hhhHHHHHhccCc
Q 002312 806 YCAILTVNSSVVSAGILRVFGQEVAELPLVATSKINHGKGYFQLLFACIEKLLSFLRVKSIVLPAA-EEAESIWTDKFGF 884 (937)
Q Consensus 806 Y~~VL~~~~~vVsaA~lri~g~~vAEiplVAT~~~yRgqG~gr~L~~~IE~~l~~lgV~~LvLpA~-~ea~~~w~~kfGF 884 (937)
+.+|...++++||.+.+.......+++-.++|+|+|||||+|++||..+++.+. +--.|++... ..|+.||.+ +||
T Consensus 47 ~~~~~~~~~~~vG~~~~~~~~~~~~~~~~l~V~p~~rg~GiG~~Ll~~~~~~~~--~~~~~~~~~~n~~a~~fy~~-~Gf 123 (292)
T TIGR03448 47 RHLVAVDSDPIVGYANLVPARGTDPAMAELVVHPAHRRRGIGRALIRALLAKGG--GRLRVWAHGDLPAARALASR-LGL 123 (292)
T ss_pred eEEEEEECCEEEEEEEEEcCCCCcceEEEEEECHhhcCCCHHHHHHHHHHHhcc--CceEEEEcCCCHHHHHHHHH-CCC
Confidence 345567889999999988875556788899999999999999999999999865 2234555543 568999999 999
Q ss_pred EEcCH
Q 002312 885 KKIDP 889 (937)
Q Consensus 885 ~~i~~ 889 (937)
+.+..
T Consensus 124 ~~~~~ 128 (292)
T TIGR03448 124 VPTRE 128 (292)
T ss_pred EEccE
Confidence 88765
No 43
>KOG3396 consensus Glucosamine-phosphate N-acetyltransferase [Cell wall/membrane/envelope biogenesis]
Probab=98.18 E-value=4.1e-06 Score=82.42 Aligned_cols=83 Identities=16% Similarity=0.223 Sum_probs=74.7
Q ss_pred eEEEEEee--CCeEEEEEEEEEeC------CeeEEEeeeEeeccccCCChhHHHHHHHHHHhhhcCccEEEecChhhhHH
Q 002312 805 MYCAILTV--NSSVVSAGILRVFG------QEVAELPLVATSKINHGKGYFQLLFACIEKLLSFLRVKSIVLPAAEEAES 876 (937)
Q Consensus 805 fY~~VL~~--~~~vVsaA~lri~g------~~vAEiplVAT~~~yRgqG~gr~L~~~IE~~l~~lgV~~LvLpA~~ea~~ 876 (937)
+|.+|+++ .++|||+|+|.|.- ..-.+|-=|+|+++||||++|+.|+..+-.++.++|+=.+.|.-.++..+
T Consensus 53 Y~i~Vied~~s~~vigtatL~IE~KfIh~~g~rGhiEDVVV~~~~rgk~LGkllv~~Lv~l~k~lgcYKi~LdC~~~nv~ 132 (150)
T KOG3396|consen 53 YYIVVIEDKESEKVIGTATLFIERKFIHGCGSRGHIEDVVVDSEYRGKQLGKLLVETLVDLAKSLGCYKIILDCDPKNVK 132 (150)
T ss_pred EEEEEEEeCCcCeEEEEEEEEEehhhhhcccccCceeEEEeChhhhhhHHhHHHHHHHHHHHHhcCcEEEEEecchhhhh
Confidence 78888885 48999999998733 23568888999999999999999999999999999999999999999999
Q ss_pred HHHhccCcEEcC
Q 002312 877 IWTDKFGFKKID 888 (937)
Q Consensus 877 ~w~~kfGF~~i~ 888 (937)
||.+ |||+..+
T Consensus 133 FYeK-cG~s~~~ 143 (150)
T KOG3396|consen 133 FYEK-CGYSNAG 143 (150)
T ss_pred HHHH-cCccccc
Confidence 9999 9999766
No 44
>TIGR03448 mycothiol_MshD mycothiol biosynthesis acetyltransferase. Members of this family are MshD, the acetyltransferase that catalyzes the final step of mycothiol biosynthesis in various members of the Actinomyctes, Mycothiol replaces glutathione in these species.
Probab=98.18 E-value=6.5e-06 Score=88.85 Aligned_cols=86 Identities=16% Similarity=0.216 Sum_probs=68.1
Q ss_pred cceEEEEEeeCCeEEEEEEEEEeC--CeeEEEeeeEeeccccCCChhHHHHHHHHHHhhhcCccEEEecCh---hhhHHH
Q 002312 803 GGMYCAILTVNSSVVSAGILRVFG--QEVAELPLVATSKINHGKGYFQLLFACIEKLLSFLRVKSIVLPAA---EEAESI 877 (937)
Q Consensus 803 ~GfY~~VL~~~~~vVsaA~lri~g--~~vAEiplVAT~~~yRgqG~gr~L~~~IE~~l~~lgV~~LvLpA~---~ea~~~ 877 (937)
.++|.++-..+|++||.+.+.+.. .+.++|-.++|+++|||||+|+.||..+++.++..|+..+.+... ..|..|
T Consensus 198 ~~~~~a~~~~~~~~vG~~~~~~~~~~~~~~~i~~~~V~p~~rg~GiG~~ll~~~~~~~~~~g~~~v~l~v~~~N~~a~~~ 277 (292)
T TIGR03448 198 AGLFLAFDDAPGELLGFHWTKVHPDEPALGEVYVVGVDPAAQGRGLGDALTLIGLHHLAARGLPAVMLYVEADNEAAVRT 277 (292)
T ss_pred CceEEEEECCCCcEEEEEEEEecCCCCceeEEEEEEECHHHcCCCHHHHHHHHHHHHHHHCCCCEEEEEEeCCCHHHHHH
Confidence 345544321268999987666654 246888889999999999999999999999999999998887654 368999
Q ss_pred HHhccCcEEcCH
Q 002312 878 WTDKFGFKKIDP 889 (937)
Q Consensus 878 w~~kfGF~~i~~ 889 (937)
|.+ +||+..+.
T Consensus 278 y~k-~GF~~~~~ 288 (292)
T TIGR03448 278 YEK-LGFTVAEV 288 (292)
T ss_pred HHH-cCCEEccc
Confidence 999 99997653
No 45
>KOG3139 consensus N-acetyltransferase [General function prediction only]
Probab=98.17 E-value=9.8e-06 Score=81.85 Aligned_cols=73 Identities=16% Similarity=0.175 Sum_probs=62.7
Q ss_pred EEEEEEEEEeCC---eeEEEeeeEeeccccCCChhHHHHHHHHHHhhhcCccEEEecChh---hhHHHHHhccCcEEcCH
Q 002312 816 VVSAGILRVFGQ---EVAELPLVATSKINHGKGYFQLLFACIEKLLSFLRVKSIVLPAAE---EAESIWTDKFGFKKIDP 889 (937)
Q Consensus 816 vVsaA~lri~g~---~vAEiplVAT~~~yRgqG~gr~L~~~IE~~l~~lgV~~LvLpA~~---ea~~~w~~kfGF~~i~~ 889 (937)
.|||+....... .-++|-.+||+++|||||+|++|+..+.+.+++.|...++|.+.. .|..+|++ |||.....
T Consensus 68 ~VGai~ck~~~~r~~~rgyi~mLaV~~e~Rg~GIg~aLvr~aId~m~~~g~~eVvLeTe~~n~~A~~LY~s-LGF~r~~r 146 (165)
T KOG3139|consen 68 TVGAIVCKLDTHRNTLRGYIAMLAVDSEYRGQGIGKALVRKAIDAMRSRGYSEVVLETEVTNLSALRLYES-LGFKRDKR 146 (165)
T ss_pred eEEEEEEeccccCCcceEEEEEEEechhhccccHHHHHHHHHHHHHHHCCCcEEEEeccccchHHHHHHHh-cCceEecc
Confidence 577776654332 359999999999999999999999999999999999999998754 68999999 99998654
No 46
>TIGR02406 ectoine_EctA L-2,4-diaminobutyric acid acetyltransferase. This enzyme family is the EctA of ectoine biosynthesis. Ectoine is a compatible solute, analagous to trehalose, betaines, etc., found often in halotolerant organisms. EctA is L-2,4-diaminobutyric acid acetyltransferase, also called DABA acetyltransferase.
Probab=98.12 E-value=1e-05 Score=80.62 Aligned_cols=83 Identities=12% Similarity=0.089 Sum_probs=65.9
Q ss_pred EEEEEe-eCCeEEEEEEEEE--eCCeeEEEeeeEeeccccCCChhHHHHHHHHHHhhhcCccEEEecC---hhhhHHHHH
Q 002312 806 YCAILT-VNSSVVSAGILRV--FGQEVAELPLVATSKINHGKGYFQLLFACIEKLLSFLRVKSIVLPA---AEEAESIWT 879 (937)
Q Consensus 806 Y~~VL~-~~~~vVsaA~lri--~g~~vAEiplVAT~~~yRgqG~gr~L~~~IE~~l~~lgV~~LvLpA---~~ea~~~w~ 879 (937)
+.+|.+ .++++||.+.+.. ...+.+.+-.+||+++|||||+|++|+..+++.+...++.+|.+.. -..|..+|+
T Consensus 40 ~~~v~~~~~~~ivG~~~~~~~~~~~~~~~i~~l~V~p~~rg~GiG~~L~~~l~~~a~~~~~~~i~~~v~~~N~~a~~ly~ 119 (157)
T TIGR02406 40 TSIVAESEGGEIVGFVSGYLRPDRPDVLFVWQVAVDPRARGKGLARRLLEALLERVACERVRHLETTITPDNQASRALFK 119 (157)
T ss_pred cEEEEEcCCCeEEEEEEEEecCCCCCeEEEEEEEEChHhccCcHHHHHHHHHHHHHHhCCCCEEEEEEcCCCHHHHHHHH
Confidence 345556 4679999876543 2345788999999999999999999999999999999988887654 446788999
Q ss_pred hccCcEEcCH
Q 002312 880 DKFGFKKIDP 889 (937)
Q Consensus 880 ~kfGF~~i~~ 889 (937)
+ +||+....
T Consensus 120 k-~G~~~~~~ 128 (157)
T TIGR02406 120 A-LARRRGVH 128 (157)
T ss_pred H-hCcccCCC
Confidence 8 99976443
No 47
>COG0456 RimI Acetyltransferases [General function prediction only]
Probab=98.09 E-value=1.4e-05 Score=79.07 Aligned_cols=76 Identities=22% Similarity=0.251 Sum_probs=63.3
Q ss_pred eEEEEEEEEE-eCC----eeEEEeeeEeeccccCCChhHHHHHHHHHHhhhcCc-cEEEecChh---hhHHHHHhccCcE
Q 002312 815 SVVSAGILRV-FGQ----EVAELPLVATSKINHGKGYFQLLFACIEKLLSFLRV-KSIVLPAAE---EAESIWTDKFGFK 885 (937)
Q Consensus 815 ~vVsaA~lri-~g~----~vAEiplVAT~~~yRgqG~gr~L~~~IE~~l~~lgV-~~LvLpA~~---ea~~~w~~kfGF~ 885 (937)
+++|....++ .+. ..++|-.+||+|+|||+|+|++|+..+++.+...|. +.++|-... .|..+|.+ +||+
T Consensus 72 ~~~G~~~~~~~~~~~~~~~~~~i~~iaV~p~~r~~Gig~~Ll~~~~~~~~~~~~~~~~~L~V~~~N~~Ai~lY~~-~GF~ 150 (177)
T COG0456 72 KVVGFLLVRVVDGRPSADHEGHIYNLAVDPEYRGRGIGRALLDEALERLRERGLADKIVLEVRESNEAAIGLYRK-LGFE 150 (177)
T ss_pred ceeEEEEEEEecCCccccCccEEEEEEEChHhhcCCHHHHHHHHHHHHHHhcCCCceEEEEEecCChHHHHHHHH-cCCE
Confidence 4788777753 332 279999999999999999999999999999999986 777777654 48999999 9999
Q ss_pred EcCHHH
Q 002312 886 KIDPEL 891 (937)
Q Consensus 886 ~i~~~e 891 (937)
.+....
T Consensus 151 ~~~~~~ 156 (177)
T COG0456 151 VVKIRK 156 (177)
T ss_pred EEeeeh
Confidence 987644
No 48
>TIGR03103 trio_acet_GNAT GNAT-family acetyltransferase TIGR03103. Members of this protein family belong to the GNAT family of acetyltransferases. Each is part of a conserved three-gene cassette sparsely distributed across at least twenty different species known so far, including alpha, beta, and gamma Proteobacteria, Mycobacterium, and Prosthecochloris, which is a member of the Chlorobi. The other two members of the cassette are a probable protease and an asparagine synthetase family protein.
Probab=98.08 E-value=1.3e-05 Score=95.54 Aligned_cols=85 Identities=12% Similarity=0.133 Sum_probs=67.9
Q ss_pred ceEEEEEee--CCeEEEEEEEEEe------CCeeEEEeeeEeeccccCCChhHHHHHHHHHHhhhcCccEEEecC---hh
Q 002312 804 GMYCAILTV--NSSVVSAGILRVF------GQEVAELPLVATSKINHGKGYFQLLFACIEKLLSFLRVKSIVLPA---AE 872 (937)
Q Consensus 804 GfY~~VL~~--~~~vVsaA~lri~------g~~vAEiplVAT~~~yRgqG~gr~L~~~IE~~l~~lgV~~LvLpA---~~ 872 (937)
+.+.+|.+. +|++||.+....+ +...++|-.|+|+++|||||+|++||..+++.++..|+.+++|.. -.
T Consensus 122 ~~~~~vA~~~~~g~IVG~~~~~~~~~~~~d~~~~~~i~~l~V~P~~Rg~GIG~~Ll~~l~e~a~~~G~~~i~L~V~~~N~ 201 (547)
T TIGR03103 122 AITYLVAEDEASGAIIGTVMGVDHRKAFNDPEHGSSLWCLAVDPQAAHPGVGEALVRALAEHFQSRGCAYMDLSVMHDNE 201 (547)
T ss_pred CceEEEEEECCCCeEEEEEEEEeccccccCCCCCeEEEEEEECHHHcCCCHHHHHHHHHHHHHHHCCCCEEEEEEcCCCH
Confidence 444555554 6999999875322 123478889999999999999999999999999999999987653 45
Q ss_pred hhHHHHHhccCcEEcCH
Q 002312 873 EAESIWTDKFGFKKIDP 889 (937)
Q Consensus 873 ea~~~w~~kfGF~~i~~ 889 (937)
.|..||.+ +||+.++.
T Consensus 202 ~Ai~fY~k-lGf~~~~~ 217 (547)
T TIGR03103 202 QAIALYEK-LGFRRIPV 217 (547)
T ss_pred HHHHHHHH-CCCEEeeE
Confidence 78999998 99988754
No 49
>PF13420 Acetyltransf_4: Acetyltransferase (GNAT) domain; PDB: 3DR8_A 3DR6_A 2AE6_B 2JLM_C 2J8R_A 1YVO_B 2J8M_A 2J8N_A 2BL1_A 3IWG_A ....
Probab=98.05 E-value=3.2e-05 Score=75.17 Aligned_cols=81 Identities=21% Similarity=0.268 Sum_probs=65.0
Q ss_pred EEEEe-eCCeEEEEEEEEEeCC--eeEEEeeeEeeccccCCChhHHHHHHHHHHh-hhcCccEEEecC---hhhhHHHHH
Q 002312 807 CAILT-VNSSVVSAGILRVFGQ--EVAELPLVATSKINHGKGYFQLLFACIEKLL-SFLRVKSIVLPA---AEEAESIWT 879 (937)
Q Consensus 807 ~~VL~-~~~~vVsaA~lri~g~--~vAEiplVAT~~~yRgqG~gr~L~~~IE~~l-~~lgV~~LvLpA---~~ea~~~w~ 879 (937)
.+++. .+|++||.+.++.... ..+++- +-+.++||++|+|+.|+..+++.+ ..+|+++|.+.. -..+..||+
T Consensus 52 ~~~v~~~~g~iiG~~~~~~~~~~~~~~~~~-~~v~~~~~~~gig~~l~~~l~~~af~~~~~~~i~~~v~~~N~~~i~~~~ 130 (155)
T PF13420_consen 52 LFLVAEEDGKIIGYVSLRDIDPYNHTAELS-IYVSPDYRGKGIGRKLLDELIEYAFKELGIHKIYLEVFSSNEKAINFYK 130 (155)
T ss_dssp EEEEEECTTEEEEEEEEEESSSGTTEEEEE-EEEEGGGTTSSHHHHHHHHHHHHH-HHTT-CEEEEEEETT-HHHHHHHH
T ss_pred EEEEEEcCCcEEEEEEEEeeeccCCEEEEe-eEEChhHCCCcHHHHHHHHHHHHhhhccCeEEEEEEEecCCHHHHHHHH
Confidence 33334 5999999999986553 578887 445599999999999999999999 999999987543 446889999
Q ss_pred hccCcEEcCH
Q 002312 880 DKFGFKKIDP 889 (937)
Q Consensus 880 ~kfGF~~i~~ 889 (937)
+ +||+..+.
T Consensus 131 ~-~GF~~~g~ 139 (155)
T PF13420_consen 131 K-LGFEEEGE 139 (155)
T ss_dssp H-TTEEEEEE
T ss_pred h-CCCEEEEE
Confidence 9 99998765
No 50
>cd04301 NAT_SF N-Acyltransferase superfamily: Various enzymes that characteristically catalyze the transfer of an acyl group to a substrate. NAT (N-Acyltransferase) is a large superfamily of enzymes that mostly catalyze the transfer of an acyl group to a substrate and are implicated in a variety of functions, ranging from bacterial antibiotic resistance to circadian rhythms in mammals. Members include GCN5-related N-Acetyltransferases (GNAT) such as Aminoglycoside N-acetyltransferases, Histone N-acetyltransferase (HAT) enzymes, and Serotonin N-acetyltransferase, which catalyze the transfer of an acetyl group to a substrate. The kinetic mechanism of most GNATs involves the ordered formation of a ternary complex: the reaction begins with Acetyl Coenzyme A (AcCoA) binding, followed by binding of substrate, then direct transfer of the acetyl group from AcCoA to the substrate, followed by product and subsequent CoA release. Other family members include Arginine/ornithine N-succinyltransfera
Probab=98.04 E-value=2.1e-05 Score=62.45 Aligned_cols=61 Identities=20% Similarity=0.117 Sum_probs=55.0
Q ss_pred EEEeeCCeEEEEEEEEEeC--CeeEEEeeeEeeccccCCChhHHHHHHHHHHhhhcCccEEEe
Q 002312 808 AILTVNSSVVSAGILRVFG--QEVAELPLVATSKINHGKGYFQLLFACIEKLLSFLRVKSIVL 868 (937)
Q Consensus 808 ~VL~~~~~vVsaA~lri~g--~~vAEiplVAT~~~yRgqG~gr~L~~~IE~~l~~lgV~~LvL 868 (937)
++++.++++||.+.+.... ...+++-.++|+++|||+|+|+.|+..+.+.+...|.+++.+
T Consensus 2 ~~~~~~~~~ig~~~~~~~~~~~~~~~l~~~~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~v~~ 64 (65)
T cd04301 2 LVAEDDGEIVGFASLSPDGSGGDTAYIGDLAVLPEYRGKGIGSALLEAAEEEARERGAKRLRL 64 (65)
T ss_pred EEEecCCEEEEEEEEEecCCCCccEEEEEEEECHHHcCcCHHHHHHHHHHHHHHHcCCcEEEe
Confidence 3456789999999988866 478999999999999999999999999999999999999886
No 51
>PF08445 FR47: FR47-like protein; InterPro: IPR013653 Proteins in this entry have a conserved region similar to the C-terminal region of the Drosophila melanogaster (Fruit fly) hypothetical protein FR47 (Q9VR51 from SWISSPROT). This protein has been found to consist of two N-acyltransferase-like domains swapped with the C-terminal strands. ; GO: 0016747 transferase activity, transferring acyl groups other than amino-acyl groups; PDB: 1SQH_A 3EC4_B.
Probab=98.03 E-value=2.2e-05 Score=71.46 Aligned_cols=75 Identities=16% Similarity=0.220 Sum_probs=56.4
Q ss_pred CCeEEEEEEEEEeCCeeEEEeeeEeeccccCCChhHHHHHHHHHHhhhcCccEEE-ec-ChhhhHHHHHhccCcEEcCH
Q 002312 813 NSSVVSAGILRVFGQEVAELPLVATSKINHGKGYFQLLFACIEKLLSFLRVKSIV-LP-AAEEAESIWTDKFGFKKIDP 889 (937)
Q Consensus 813 ~~~vVsaA~lri~g~~vAEiplVAT~~~yRgqG~gr~L~~~IE~~l~~lgV~~Lv-Lp-A~~ea~~~w~~kfGF~~i~~ 889 (937)
+++.+..+.-.+..+. ++|-.|.|.|+|||+|+|+.|+.++.+.+...|..-+. +. .-..|..+|++ +||+.+.+
T Consensus 6 ~~~~~~l~~~~~~~~~-g~i~~v~t~p~~RrrGlg~~lv~~l~~~~~~~g~~~~l~v~~~N~~s~~ly~k-lGf~~~~~ 82 (86)
T PF08445_consen 6 DGELVALVAWIIRSDD-GEIGGVYTLPEHRRRGLGSALVAALARELLERGKTPFLYVDADNEASIRLYEK-LGFREIEE 82 (86)
T ss_dssp CTCCEEEEEEEEESCT-CCEEEEEE-GGGTTSSHHHHHHHHHHHHHHHTTSEEEEEEETT-HHHHHHHHH-CT-EEEEE
T ss_pred ECCccceeeEeeeCCC-cEEEEEEECHHHcCCCHHHHHHHHHHHHHHhCCCcEEEEEECCCHHHHHHHHH-cCCEEEEE
Confidence 3455566665565555 99999999999999999999999999998888877533 32 33457899999 99998754
No 52
>PHA01807 hypothetical protein
Probab=98.02 E-value=1.5e-05 Score=80.36 Aligned_cols=81 Identities=7% Similarity=-0.008 Sum_probs=63.6
Q ss_pred EEEEEeeCCeEEEEEEEEEeCC----eeEEEeeeEeeccccCCChhHHHHHHHHHHhhhcCccEEEecChh---hhHHHH
Q 002312 806 YCAILTVNSSVVSAGILRVFGQ----EVAELPLVATSKINHGKGYFQLLFACIEKLLSFLRVKSIVLPAAE---EAESIW 878 (937)
Q Consensus 806 Y~~VL~~~~~vVsaA~lri~g~----~vAEiplVAT~~~yRgqG~gr~L~~~IE~~l~~lgV~~LvLpA~~---ea~~~w 878 (937)
+.++++.+|++||.+.+..... .+.+|..+.|+++|||+|+|++||+.+++.++..|+..|.+-... .|..+|
T Consensus 54 ~~lva~~dg~lvG~~~l~~~~~~~~~~i~~l~~lYV~pe~RG~GiG~~Ll~~~~~~Ar~~G~~~l~l~v~~~n~~a~~~y 133 (153)
T PHA01807 54 TELLVFRDGKLAGIAVLVFEDDPHVGPCLGVQWQYVLPEYRNAGVAREFLRELIRLAGEGNLPLIAFSHREGEGRYTIHY 133 (153)
T ss_pred eEEEEEECCEEEEEEEEEcCCCcceeeeccceeEEECHHHcCCCHHHHHHHHHHHHHHHCCCCEEEEEecCCcHHHHHHH
Confidence 3356678999999999865432 234455579999999999999999999999999999999887655 467788
Q ss_pred HhccCcEEcCH
Q 002312 879 TDKFGFKKIDP 889 (937)
Q Consensus 879 ~~kfGF~~i~~ 889 (937)
.+ |++.+.
T Consensus 134 ~~---~~~~~~ 141 (153)
T PHA01807 134 RR---VKPYGQ 141 (153)
T ss_pred Hh---cCccCC
Confidence 88 455444
No 53
>PRK01346 hypothetical protein; Provisional
Probab=98.00 E-value=2.2e-05 Score=89.41 Aligned_cols=80 Identities=16% Similarity=0.127 Sum_probs=67.8
Q ss_pred EEEEeeCCeEEEEEEEEEe------CC--eeEEEeeeEeeccccCCChhHHHHHHHHHHhhhcCccEEEecChhhhHHHH
Q 002312 807 CAILTVNSSVVSAGILRVF------GQ--EVAELPLVATSKINHGKGYFQLLFACIEKLLSFLRVKSIVLPAAEEAESIW 878 (937)
Q Consensus 807 ~~VL~~~~~vVsaA~lri~------g~--~vAEiplVAT~~~yRgqG~gr~L~~~IE~~l~~lgV~~LvLpA~~ea~~~w 878 (937)
.++++.++++||.+.+..+ |. ..+.|-.|||+|+|||||+|++||..+++.++..|+..++|.+.. ..||
T Consensus 49 ~~va~~~~~lvg~~~~~~~~~~~~~~~~~~~~~i~~v~V~P~~RgrGig~~Ll~~~l~~a~~~g~~~~~L~~~~--~~~Y 126 (411)
T PRK01346 49 TLGAFDGDEVVGTAGAFDLRLTVPGGAVLPAAGVTAVTVAPTHRRRGLLTALMREQLRRIRERGEPVAALTASE--GGIY 126 (411)
T ss_pred eEEEEECCEEEEEEEEeccccccCCCCccceeEEEEEEEChhhcCCCHHHHHHHHHHHHHHHCCCcEEEEECCc--hhhH
Confidence 3556789999999887543 22 478999999999999999999999999999999999988887664 4789
Q ss_pred HhccCcEEcCH
Q 002312 879 TDKFGFKKIDP 889 (937)
Q Consensus 879 ~~kfGF~~i~~ 889 (937)
.+ |||.....
T Consensus 127 ~r-~Gf~~~~~ 136 (411)
T PRK01346 127 GR-FGYGPATY 136 (411)
T ss_pred hh-CCCeeccc
Confidence 98 99987765
No 54
>PRK10562 putative acetyltransferase; Provisional
Probab=97.95 E-value=3.3e-05 Score=75.02 Aligned_cols=76 Identities=11% Similarity=0.103 Sum_probs=58.9
Q ss_pred EEEeeCCeEEEEEEEEEeCCeeEEEeeeEeeccccCCChhHHHHHHHHHHhhhcCccEEEecChhhhHHHHHhccCcEEc
Q 002312 808 AILTVNSSVVSAGILRVFGQEVAELPLVATSKINHGKGYFQLLFACIEKLLSFLRVKSIVLPAAEEAESIWTDKFGFKKI 887 (937)
Q Consensus 808 ~VL~~~~~vVsaA~lri~g~~vAEiplVAT~~~yRgqG~gr~L~~~IE~~l~~lgV~~LvLpA~~ea~~~w~~kfGF~~i 887 (937)
+++..+|++||.+.+... ..+-.++|+++|||+|+|+.||..+++.+..+.+ .+...-..+..||++ +||+.+
T Consensus 51 ~v~~~~~~~iG~~~~~~~----~~i~~~~v~~~~rg~G~g~~ll~~~~~~~~~~~~--~v~~~N~~s~~~y~k-~Gf~~~ 123 (145)
T PRK10562 51 WVWEEDGKLLGFVSVLEG----RFVGALFVAPKAVRRGIGKALMQHVQQRYPHLSL--EVYQKNQRAVNFYHA-QGFRIV 123 (145)
T ss_pred EEEEECCEEEEEEEEeec----cEEEEEEECHHHcCCCHHHHHHHHHHhhCCeEEE--EEEcCChHHHHHHHH-CCCEEc
Confidence 455678899999887432 3577899999999999999999999997654432 233445578999999 999998
Q ss_pred CHH
Q 002312 888 DPE 890 (937)
Q Consensus 888 ~~~ 890 (937)
+..
T Consensus 124 ~~~ 126 (145)
T PRK10562 124 DSA 126 (145)
T ss_pred ccc
Confidence 863
No 55
>PRK15130 spermidine N1-acetyltransferase; Provisional
Probab=97.94 E-value=5e-05 Score=76.71 Aligned_cols=82 Identities=17% Similarity=0.128 Sum_probs=67.1
Q ss_pred EEEEEeeCCeEEEEEEEEEeC--CeeEEEeeeEeeccccCCChhHHHHHHHHHHhh-hcCccEEEecC---hhhhHHHHH
Q 002312 806 YCAILTVNSSVVSAGILRVFG--QEVAELPLVATSKINHGKGYFQLLFACIEKLLS-FLRVKSIVLPA---AEEAESIWT 879 (937)
Q Consensus 806 Y~~VL~~~~~vVsaA~lri~g--~~vAEiplVAT~~~yRgqG~gr~L~~~IE~~l~-~lgV~~LvLpA---~~ea~~~w~ 879 (937)
+.++++.+|++||.+.+.... ...+++- +++.++|||+|+|+.|+..+.+.+. .+|+++|++.. -..+..+|.
T Consensus 58 ~~~~i~~~g~~iG~~~~~~~~~~~~~~~~~-~~v~~~~~g~G~g~~l~~~l~~~~~~~~~~~rv~~~v~~~N~~s~~~ye 136 (186)
T PRK15130 58 RRFVVECDGEKAGLVELVEINHVHRRAEFQ-IIISPEYQGKGLATRAAKLAMDYGFTVLNLYKLYLIVDKENEKAIHIYR 136 (186)
T ss_pred cEEEEEECCEEEEEEEEEeecCCCCeEEEE-EEECHHHcCCCHHHHHHHHHHHHHhhcCCceEEEEEEccCCHHHHHHHH
Confidence 345567899999999886643 3467774 8999999999999999999999875 68999998864 346889999
Q ss_pred hccCcEEcCH
Q 002312 880 DKFGFKKIDP 889 (937)
Q Consensus 880 ~kfGF~~i~~ 889 (937)
+ +||+.++.
T Consensus 137 k-~GF~~~~~ 145 (186)
T PRK15130 137 K-LGFEVEGE 145 (186)
T ss_pred H-CCCEEEEE
Confidence 9 99998765
No 56
>PRK10514 putative acetyltransferase; Provisional
Probab=97.93 E-value=4e-05 Score=73.75 Aligned_cols=73 Identities=16% Similarity=0.114 Sum_probs=57.7
Q ss_pred eeCCeEEEEEEEEEeCCeeEEEeeeEeeccccCCChhHHHHHHHHHHhhhcCccEEEecChhhhHHHHHhccCcEEcCHH
Q 002312 811 TVNSSVVSAGILRVFGQEVAELPLVATSKINHGKGYFQLLFACIEKLLSFLRVKSIVLPAAEEAESIWTDKFGFKKIDPE 890 (937)
Q Consensus 811 ~~~~~vVsaA~lri~g~~vAEiplVAT~~~yRgqG~gr~L~~~IE~~l~~lgV~~LvLpA~~ea~~~w~~kfGF~~i~~~ 890 (937)
..++++||.+.+.- .++..++|+++|||||+|++||+.+++.+.. +...+...-..+..||++ +||+..+..
T Consensus 56 ~~~~~~iG~~~~~~-----~~~~~~~v~p~~rgkGig~~Ll~~~~~~~~~--i~~~v~~~N~~a~~~yek-~Gf~~~~~~ 127 (145)
T PRK10514 56 DERDQPVGFMLLSG-----GHMEALFVDPDVRGCGVGRMLVEHALSLHPE--LTTDVNEQNEQAVGFYKK-MGFKVTGRS 127 (145)
T ss_pred ecCCcEEEEEEEec-----CcEeEEEECHHhccCCHHHHHHHHHHHhccc--cEEEeecCCHHHHHHHHH-CCCEEeccc
Confidence 46789999887642 3456799999999999999999999997643 344444555678999998 999998774
Q ss_pred H
Q 002312 891 L 891 (937)
Q Consensus 891 e 891 (937)
.
T Consensus 128 ~ 128 (145)
T PRK10514 128 E 128 (145)
T ss_pred c
Confidence 4
No 57
>PF13523 Acetyltransf_8: Acetyltransferase (GNAT) domain; PDB: 2VQY_A 2BUE_A 1V0C_A 1YK3_D 2PR8_A 2QIR_A 2PRB_A 2QML_A 2PC1_A.
Probab=97.90 E-value=7.5e-05 Score=72.88 Aligned_cols=86 Identities=15% Similarity=0.130 Sum_probs=68.5
Q ss_pred cceEEEEEeeCCeEEEEEEEEE------eCCeeEEEeeeEeeccccCCChhHHHHHHHHHHhhhc-CccEEEecChh---
Q 002312 803 GGMYCAILTVNSSVVSAGILRV------FGQEVAELPLVATSKINHGKGYFQLLFACIEKLLSFL-RVKSIVLPAAE--- 872 (937)
Q Consensus 803 ~GfY~~VL~~~~~vVsaA~lri------~g~~vAEiplVAT~~~yRgqG~gr~L~~~IE~~l~~l-gV~~LvLpA~~--- 872 (937)
.+++.+|++.||++||.+.+.- .....+.+-.+++.++|||||+|+.+|.++.+.+..- ++++|++....
T Consensus 46 ~~~~~~v~~~dg~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rg~G~g~~~~~~~~~~~~~~~~~~~i~~~~~~~N~ 125 (152)
T PF13523_consen 46 PGHHPYVAEDDGEPIGYFEIYWPDEDYDADDGDRGIHRLIVDPEYRGQGLGKAMLRALIEFLFEDPGVDRIVLDPHEDNT 125 (152)
T ss_dssp TTEEEEEEEETTEEEEEEEEEEGGGSS---TTEEEEEEEESTGGGTTSSHHHHHHHHHHHHHHTSTT--EEEEEEBTT-H
T ss_pred CCceEEEEEECCEEEEEEEEecccccccCCCCEEEEeeeeechhhcCCCHHHHHHHHHHHHHHhCCCCCEEEEecCcCCH
Confidence 4577888899999999887642 1345777999999999999999999999999887766 89999988765
Q ss_pred hhHHHHHhccCcEEcCH
Q 002312 873 EAESIWTDKFGFKKIDP 889 (937)
Q Consensus 873 ea~~~w~~kfGF~~i~~ 889 (937)
-+...|++ +||+.++.
T Consensus 126 ~~~~~~~k-~GF~~~g~ 141 (152)
T PF13523_consen 126 RAIRLYEK-AGFRKVGE 141 (152)
T ss_dssp HHHHHHHH-TT-EEEEE
T ss_pred HHHHHHHH-cCCEEeeE
Confidence 47888998 99998765
No 58
>PF00628 PHD: PHD-finger; InterPro: IPR019787 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the PHD (homeodomain) zinc finger domain [,], which is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in chromatin-mediated transcriptional regulation. The PHD finger motif is reminiscent of, but distinct from the C3HC4 type RING finger. The function of this domain is not yet known but in analogy with the LIM domain it could be involved in protein-protein interaction and be important for the assembly or activity of multicomponent complexes involved in transcriptional activation or repression. Alternatively, the interactions could be intra-molecular and be important in maintaining the structural integrity of the protein. In similarity to the RING finger and the LIM domain, the PHD finger is thought to bind two zinc ions. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0005515 protein binding; PDB: 3ZVY_A 2LGG_A 3SOW_A 3SOU_B 3ASL_A 3ASK_A 3ZVZ_B 3T6R_A 2LGK_A 3SOX_B ....
Probab=97.90 E-value=2.2e-06 Score=70.27 Aligned_cols=48 Identities=31% Similarity=0.971 Sum_probs=36.4
Q ss_pred cccccCCCCCCCCCCCCceeeCCCCCCcCCCCCCCcCcCCcccCCCCCcceecCCcc
Q 002312 649 CLLCRGCDFSKSGFGPRTILLCDQCEREFHVGCLKKHKMADLRELPKGKWFCCMDCS 705 (937)
Q Consensus 649 C~vC~~~df~~sgf~~~tLL~CDqCdr~yHv~CL~p~~~~~L~evP~g~WfCc~~C~ 705 (937)
|.+|+..+ ..+.||.||.|+++||..|+.+.. .....+.+.|+| +.|.
T Consensus 2 C~vC~~~~------~~~~~i~C~~C~~~~H~~C~~~~~--~~~~~~~~~w~C-~~C~ 49 (51)
T PF00628_consen 2 CPVCGQSD------DDGDMIQCDSCNRWYHQECVGPPE--KAEEIPSGDWYC-PNCR 49 (51)
T ss_dssp BTTTTSSC------TTSSEEEBSTTSCEEETTTSTSSH--SHHSHHSSSBSS-HHHH
T ss_pred CcCCCCcC------CCCCeEEcCCCChhhCcccCCCCh--hhccCCCCcEEC-cCCc
Confidence 88898743 578899999999999999998842 112334559999 6774
No 59
>TIGR01686 FkbH FkbH-like domain. The C-terminal portion of this domain is unique to this family (by BLAST).
Probab=97.88 E-value=4.8e-05 Score=84.59 Aligned_cols=82 Identities=11% Similarity=0.037 Sum_probs=68.8
Q ss_pred ceEEEEEee---CCeEEEEEEEEEeCCeeEEEeeeEeeccccCCChhHHHHHHHHHHhhhcCccEEEecC-----hhhhH
Q 002312 804 GMYCAILTV---NSSVVSAGILRVFGQEVAELPLVATSKINHGKGYFQLLFACIEKLLSFLRVKSIVLPA-----AEEAE 875 (937)
Q Consensus 804 GfY~~VL~~---~~~vVsaA~lri~g~~vAEiplVAT~~~yRgqG~gr~L~~~IE~~l~~lgV~~LvLpA-----~~ea~ 875 (937)
..|++.+.. ++.+||.+.++.. .+.++|-.+++++.|||+|+|++||.++++.++..|+.+|+|.. -..|.
T Consensus 230 ~~~~~~~~d~~gd~givG~~~~~~~-~~~~~I~~l~vs~r~~grGig~~Ll~~l~~~a~~~G~~~i~l~v~~~~~N~~A~ 308 (320)
T TIGR01686 230 EIVTVSMSDRFGDSGIIGIFVFEKK-EGNLFIDDLCMSCRALGRGVETRMLRWLFEQALDLGNHNARLYYRRTERNMPFL 308 (320)
T ss_pred CEEEEEEEecCCCCceEEEEEEEec-CCcEEEEEEEEcHhHhcCcHHHHHHHHHHHHHHHcCCCeEEEEEeeCCCchHHH
Confidence 355555543 6789999998764 46789999999999999999999999999999999999988854 34689
Q ss_pred HHHHhccCcEEc
Q 002312 876 SIWTDKFGFKKI 887 (937)
Q Consensus 876 ~~w~~kfGF~~i 887 (937)
.||.+ +||...
T Consensus 309 ~fY~~-~GF~~~ 319 (320)
T TIGR01686 309 SFYEQ-IGFEDE 319 (320)
T ss_pred HHHHH-cCCccC
Confidence 99998 999854
No 60
>TIGR01211 ELP3 histone acetyltransferase, ELP3 family. The Saccharomyces cerevisiae member YPL086C has been characterized in vitro as an N-terminal acetyltransferase for all four core histones. It is a component of the RNA polymerase II holoenzyme, designated Elp3p for Elongator Protein 3. Members of this family are found in eukaryotes and archaea. These proteins are part of the larger set of GNAT acetyltransferases.
Probab=97.85 E-value=4.9e-05 Score=90.06 Aligned_cols=77 Identities=16% Similarity=0.200 Sum_probs=65.2
Q ss_pred eCCeEEEEEEEEEeCCeeE-----------EEeeeEe--------eccccCCChhHHHHHHHHHHhhhcCccEEEecChh
Q 002312 812 VNSSVVSAGILRVFGQEVA-----------ELPLVAT--------SKINHGKGYFQLLFACIEKLLSFLRVKSIVLPAAE 872 (937)
Q Consensus 812 ~~~~vVsaA~lri~g~~vA-----------EiplVAT--------~~~yRgqG~gr~L~~~IE~~l~~lgV~~LvLpA~~ 872 (937)
.++.+||-.+||....+.. ||-..++ .++|||+|+|+.||+++|+.|++.|++.|+|.+..
T Consensus 421 ~~~~l~G~lrlr~~~~~~~~~~~~~~a~IrelhV~G~~~~~~~~~~~~~rg~GiG~~Ll~~ae~~Ar~~G~~~i~v~s~~ 500 (522)
T TIGR01211 421 KNDILIGFLRLRFPSEPAHRKEVDATALVRELHVYGSEVPIGERGDDEWQHRGYGRRLLEEAERIAAEEGSEKILVISGI 500 (522)
T ss_pred CCCeEEEEEEEecCcccccccccCCCceEEEEEEeeeeccccccCChhHhCcCHHHHHHHHHHHHHHHCCCCEEEEeeCc
Confidence 4678999999988664322 5555544 58899999999999999999999999999999999
Q ss_pred hhHHHHHhccCcEEcCH
Q 002312 873 EAESIWTDKFGFKKIDP 889 (937)
Q Consensus 873 ea~~~w~~kfGF~~i~~ 889 (937)
.|..||.+ +||...++
T Consensus 501 ~A~~FY~k-lGf~~~g~ 516 (522)
T TIGR01211 501 GVREYYRK-LGYELDGP 516 (522)
T ss_pred hHHHHHHH-CCCEEEcc
Confidence 99999998 99998764
No 61
>smart00249 PHD PHD zinc finger. The plant homeodomain (PHD) finger is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in epigenetics and chromatin-mediated transcriptional regulation. The PHD finger binds two zinc ions using the so-called 'cross-brace' motif and is thus structurally related to the TIGR03585 PseH pseudaminic acid biosynthesis N-acetyl transferase. Sequences in this family are members of the pfam00583 (GNAT) superfamily of acetyltransferases and are proposed to perform a N-acetylation step in the process of pseudaminic acid biosynthesis in Campylobacter species. This gene is commonly observed in apparent operons with other genes responsible for the biosynthesis of pseudaminic acid and as a component of flagellar and exopolysaccharide biosynthesis loci. Significantly, many genomes containing other components of this pathway lack this gene, indicating that some other N-acetyl transferases may be incolved and/or the step is optional, resulting in a non-acetylated pseudaminic acid variant sugar.
Probab=97.81 E-value=0.00014 Score=70.55 Aligned_cols=81 Identities=14% Similarity=0.109 Sum_probs=66.1
Q ss_pred EEEeeCCeEEEEEEEEEeC--CeeEEEeeeEeeccccCCChhHHHHHHHHHHhh-hcCccEEEec---ChhhhHHHHHhc
Q 002312 808 AILTVNSSVVSAGILRVFG--QEVAELPLVATSKINHGKGYFQLLFACIEKLLS-FLRVKSIVLP---AAEEAESIWTDK 881 (937)
Q Consensus 808 ~VL~~~~~vVsaA~lri~g--~~vAEiplVAT~~~yRgqG~gr~L~~~IE~~l~-~lgV~~LvLp---A~~ea~~~w~~k 881 (937)
+++..+|++||.+.+.... ...+++... +.+.+| +|+|+.++.++++.+. .+|+.+|.+. .-..+..+|.+
T Consensus 54 ~~~~~~g~~vG~~~~~~~~~~~~~~~~g~~-~~~~~~-~G~g~~~~~~~~~~a~~~~~~~~i~~~v~~~N~~s~~~y~k- 130 (156)
T TIGR03585 54 WIVCQESRPIGVISFTDINLVHKSAFWGIY-ANPFCK-PGVGSVLEEAALEYAFEHLGLHKLSLEVLEFNNKALKLYEK- 130 (156)
T ss_pred EEEEECCEEEEEEEEEecChhhCeEEEEEE-eChhhh-cCchHHHHHHHHHHHHhhCCeeEEEEEEeccCHHHHHHHHH-
Confidence 3446789999999987655 356788765 889999 9999999999999987 5899999875 45568899999
Q ss_pred cCcEEcCHHH
Q 002312 882 FGFKKIDPEL 891 (937)
Q Consensus 882 fGF~~i~~~e 891 (937)
+||+.++...
T Consensus 131 ~Gf~~~g~~~ 140 (156)
T TIGR03585 131 FGFEREGVFR 140 (156)
T ss_pred cCCeEeeeeh
Confidence 9999887543
No 63
>PF13718 GNAT_acetyltr_2: GNAT acetyltransferase 2; PDB: 2ZPA_B.
Probab=97.79 E-value=0.00014 Score=76.27 Aligned_cols=88 Identities=16% Similarity=0.133 Sum_probs=64.2
Q ss_pred eecceEEEEEeeCC--eEEEEEEEEEeC-------------------------------------CeeEEEeeeEeeccc
Q 002312 801 EFGGMYCAILTVNS--SVVSAGILRVFG-------------------------------------QEVAELPLVATSKIN 841 (937)
Q Consensus 801 ~f~GfY~~VL~~~~--~vVsaA~lri~g-------------------------------------~~vAEiplVAT~~~y 841 (937)
|=-+...++|..++ +|++|+-+-..| -.-++|-+|||+|++
T Consensus 23 DaP~h~l~~l~~~~~p~il~~~~v~~EG~l~~~l~~~i~~g~rRp~G~LiP~~L~~~~~~~~f~~l~g~RIvRIAvhP~~ 102 (196)
T PF13718_consen 23 DAPNHRLFVLLQPGDPDILGVAQVALEGGLSKELIEAILSGGRRPKGHLIPQTLAQHFGDPEFAQLSGARIVRIAVHPDL 102 (196)
T ss_dssp H-TTEEEEEEE-SS--SEEEEEEEEEEE---HHHHHHHHTTS---SS-HHHHHHHHHSS-TTGGGSEEEEEEEEEE-CCC
T ss_pred cCCcceeehhccCCCceEEEEEEEEecCCCCHHHHHHHHhCCCCCCCCCHHHHHHHHhCCHHHHhhcceeEEEEEEChhh
Confidence 33457788888888 999999887766 236899999999999
Q ss_pred cCCChhHHHHHHHHHHh-------------------------hhcCccEEEec--ChhhhHHHHHhccCcEEcCH
Q 002312 842 HGKGYFQLLFACIEKLL-------------------------SFLRVKSIVLP--AAEEAESIWTDKFGFKKIDP 889 (937)
Q Consensus 842 RgqG~gr~L~~~IE~~l-------------------------~~lgV~~LvLp--A~~ea~~~w~~kfGF~~i~~ 889 (937)
|++|||++|++.+++.+ +.-+|..|=.. +.++...||.+ .||.++--
T Consensus 103 q~~G~Gs~lL~~l~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~vDylGtSFG~t~~Ll~FW~k-~gf~pv~l 176 (196)
T PF13718_consen 103 QRMGYGSRLLQQLEQYAEGKIPSLSEQDKEKLPPLLSKLSDRRPPGVDYLGTSFGATPELLKFWQK-NGFVPVYL 176 (196)
T ss_dssp -SSSHHHHHHHHHHHT-----------------------------S-SEEEEEEE--HHHHHHHHC-TT-EEEEE
T ss_pred hcCCHHHHHHHHHHHHHhhhcccccccccccccccccccccccccCCCEEEeccCCCHHHHHHHHH-CCcEEEEE
Confidence 99999999999999999 46788876544 67889999999 99998743
No 64
>COG3393 Predicted acetyltransferase [General function prediction only]
Probab=97.78 E-value=7e-05 Score=81.09 Aligned_cols=84 Identities=20% Similarity=0.232 Sum_probs=68.4
Q ss_pred eEEEEEeeCCeEEEEEEEEEeCCeeEEEeeeEeeccccCCChhHHHHHHHHHHhhhcC-ccEEEecCh-hhhHHHHHhcc
Q 002312 805 MYCAILTVNSSVVSAGILRVFGQEVAELPLVATSKINHGKGYFQLLFACIEKLLSFLR-VKSIVLPAA-EEAESIWTDKF 882 (937)
Q Consensus 805 fY~~VL~~~~~vVsaA~lri~g~~vAEiplVAT~~~yRgqG~gr~L~~~IE~~l~~lg-V~~LvLpA~-~ea~~~w~~kf 882 (937)
+.++-+..+|+||+.|...-.+..+|+|-.|.|.|+|||+||+.+|+.++-..+-+-| ..-|+..++ +-|..+|.+ +
T Consensus 177 ~~~~f~~~d~~iVa~A~t~a~~~~~~~I~gV~T~peyR~kGyAt~lva~L~~~lL~eGk~~~L~~~~~N~~A~~iY~r-i 255 (268)
T COG3393 177 SRTYFLEGDGKIVAKAETAAENPAYAQINGVYTHPEYRGKGYATALVATLAAKLLAEGKIPCLFVNSDNPVARRIYQR-I 255 (268)
T ss_pred eeEEEEccCCcEEEeeeccccCCcceEEEEEEcCHHHccccHHHHHHHHHHHHHHhCCCeeEEEEecCCHHHHHHHHH-h
Confidence 4444456677999999999999999999999999999999999999999876655555 455666544 357889999 9
Q ss_pred CcEEcCH
Q 002312 883 GFKKIDP 889 (937)
Q Consensus 883 GF~~i~~ 889 (937)
||+.+++
T Consensus 256 GF~~~g~ 262 (268)
T COG3393 256 GFREIGE 262 (268)
T ss_pred CCeecce
Confidence 9998874
No 65
>KOG0383 consensus Predicted helicase [General function prediction only]
Probab=97.77 E-value=1.4e-05 Score=96.42 Aligned_cols=51 Identities=37% Similarity=0.869 Sum_probs=43.7
Q ss_pred ccCCcccccccCccCCcCcccccCCCCceecccCCCcccccccCC--CCCCCCCCcccccccccc
Q 002312 542 KNGLGIICHCCNSEVSPSQFEAHADGGNLLPCDGCPRAFHKECAS--LSSIPQGDWYCKYCQNMF 604 (937)
Q Consensus 542 k~~~~i~C~~C~~eiSpS~FE~HAdgG~Ll~CDgCp~afH~~CL~--L~~vPeG~W~Cp~C~~~~ 604 (937)
-..+...|.+|. ++|++++||.|+.+||..|++ +..+|.++|.|+.|....
T Consensus 43 ~~~~~e~c~ic~------------~~g~~l~c~tC~~s~h~~cl~~pl~~~p~~~~~c~Rc~~p~ 95 (696)
T KOG0383|consen 43 DDAEQEACRICA------------DGGELLWCDTCPASFHASCLGPPLTPQPNGEFICPRCFCPK 95 (696)
T ss_pred chhhhhhhhhhc------------CCCcEEEeccccHHHHHHccCCCCCcCCccceeeeeeccCC
Confidence 345677899999 899999999999999999997 667888889999995543
No 66
>KOG1512 consensus PHD Zn-finger protein [General function prediction only]
Probab=97.77 E-value=9.9e-06 Score=87.39 Aligned_cols=53 Identities=32% Similarity=0.790 Sum_probs=45.0
Q ss_pred cccCCcccccccCccCCcCcccccCCCCceecccCCCcccccccCCCCCCCCCCcccc-cccc
Q 002312 541 YKNGLGIICHCCNSEVSPSQFEAHADGGNLLPCDGCPRAFHKECASLSSIPQGDWYCK-YCQN 602 (937)
Q Consensus 541 ~k~~~~i~C~~C~~eiSpS~FE~HAdgG~Ll~CDgCp~afH~~CL~L~~vPeG~W~Cp-~C~~ 602 (937)
|..-+...|.+|++... ..++++||.|+++||..|++|..+|.|.|.|- .|..
T Consensus 309 W~C~~C~lC~IC~~P~~---------E~E~~FCD~CDRG~HT~CVGL~~lP~G~WICD~~C~~ 362 (381)
T KOG1512|consen 309 WKCSSCELCRICLGPVI---------ESEHLFCDVCDRGPHTLCVGLQDLPRGEWICDMRCRE 362 (381)
T ss_pred hhhcccHhhhccCCccc---------chheeccccccCCCCccccccccccCccchhhhHHHH
Confidence 44567788999998653 56899999999999999999999999999998 5653
No 67
>PF00628 PHD: PHD-finger; InterPro: IPR019787 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the PHD (homeodomain) zinc finger domain [,], which is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in chromatin-mediated transcriptional regulation. The PHD finger motif is reminiscent of, but distinct from the C3HC4 type RING finger. The function of this domain is not yet known but in analogy with the LIM domain it could be involved in protein-protein interaction and be important for the assembly or activity of multicomponent complexes involved in transcriptional activation or repression. Alternatively, the interactions could be intra-molecular and be important in maintaining the structural integrity of the protein. In similarity to the RING finger and the LIM domain, the PHD finger is thought to bind two zinc ions. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0005515 protein binding; PDB: 3ZVY_A 2LGG_A 3SOW_A 3SOU_B 3ASL_A 3ASK_A 3ZVZ_B 3T6R_A 2LGK_A 3SOX_B ....
Probab=97.75 E-value=1.3e-05 Score=65.64 Aligned_cols=46 Identities=41% Similarity=1.174 Sum_probs=37.2
Q ss_pred cccccCccCCcCcccccCCCCceecccCCCcccccccCCCC----CCCCCCcccccccc
Q 002312 548 ICHCCNSEVSPSQFEAHADGGNLLPCDGCPRAFHKECASLS----SIPQGDWYCKYCQN 602 (937)
Q Consensus 548 ~C~~C~~eiSpS~FE~HAdgG~Ll~CDgCp~afH~~CL~L~----~vPeG~W~Cp~C~~ 602 (937)
+|.+|++. .+.++|+.||.|.+.||..|+++. ..+.+.|+|+.|..
T Consensus 1 ~C~vC~~~---------~~~~~~i~C~~C~~~~H~~C~~~~~~~~~~~~~~w~C~~C~~ 50 (51)
T PF00628_consen 1 YCPVCGQS---------DDDGDMIQCDSCNRWYHQECVGPPEKAEEIPSGDWYCPNCRP 50 (51)
T ss_dssp EBTTTTSS---------CTTSSEEEBSTTSCEEETTTSTSSHSHHSHHSSSBSSHHHHH
T ss_pred eCcCCCCc---------CCCCCeEEcCCCChhhCcccCCCChhhccCCCCcEECcCCcC
Confidence 47888861 168899999999999999999864 44556999999974
No 68
>KOG1244 consensus Predicted transcription factor Requiem/NEURO-D4 [Transcription]
Probab=97.71 E-value=1.3e-05 Score=86.12 Aligned_cols=51 Identities=31% Similarity=0.813 Sum_probs=41.9
Q ss_pred CcccccccCccCCcCcccccCCCCceecccCCCcccccccCC--CCCCCCCCcccccccccc
Q 002312 545 LGIICHCCNSEVSPSQFEAHADGGNLLPCDGCPRAFHKECAS--LSSIPQGDWYCKYCQNMF 604 (937)
Q Consensus 545 ~~i~C~~C~~eiSpS~FE~HAdgG~Ll~CDgCp~afH~~CL~--L~~vPeG~W~Cp~C~~~~ 604 (937)
+.-.|++|+... ..++|++||.|+++||.+||. +.+-|+|.|.|..|...+
T Consensus 280 eck~csicgtse---------nddqllfcddcdrgyhmyclsppm~eppegswsc~KOG~~~ 332 (336)
T KOG1244|consen 280 ECKYCSICGTSE---------NDDQLLFCDDCDRGYHMYCLSPPMVEPPEGSWSCHLCLEEL 332 (336)
T ss_pred ecceeccccCcC---------CCceeEeecccCCceeeEecCCCcCCCCCCchhHHHHHHHH
Confidence 456788887522 467899999999999999996 667899999999997654
No 69
>COG3153 Predicted acetyltransferase [General function prediction only]
Probab=97.69 E-value=0.0001 Score=75.79 Aligned_cols=138 Identities=14% Similarity=0.146 Sum_probs=94.3
Q ss_pred hHHHHHHHHHhhhhcCCCcccCCCCCCccccccccccCCCceecceEEEEEeeCCeEEEEEEEEEe--C---CeeEEEee
Q 002312 760 TRLLLSQAVAIFHDCFDPIVDSISGRDLIPSMVYGRNLRGQEFGGMYCAILTVNSSVVSAGILRVF--G---QEVAELPL 834 (937)
Q Consensus 760 ~~~~La~AL~If~EcF~Pivd~~TgrDLIp~MVy~r~~~~~~f~GfY~~VL~~~~~vVsaA~lri~--g---~~vAEipl 834 (937)
+.......-+|.++.|.|-.. .+++..+- ...+.++. -.+|...+|++|+...+--. | ..+.=|--
T Consensus 10 ~~~d~~~i~~~~~~aF~~~~e----~~~v~~lR---~~~~~~~~--LslVA~d~g~vvG~Il~s~v~~~g~~~~~~~LaP 80 (171)
T COG3153 10 TPADIPAIEALTREAFGPGRE----AKLVDKLR---EGGRPDLT--LSLVAEDDGEVVGHILFSPVTVGGEELGWLGLAP 80 (171)
T ss_pred ChhhHHHHHHHHHHHhhcchH----HHHHHHHH---hcCCcccc--eeEEEeeCCEEEEEEEEeEEEecCcccceEEEEe
Confidence 334445666778888864322 23333222 22222222 23445778999998876532 2 14566778
Q ss_pred eEeeccccCCChhHHHHHHHHHHhhhcCccEEEecChhhhHHHHHhccCcEEcCHHHHHHHHhhCCceeeeCCCeeeeec
Q 002312 835 VATSKINHGKGYFQLLFACIEKLLSFLRVKSIVLPAAEEAESIWTDKFGFKKIDPELLSIYRKRCSQLVTFKGTSMLQKR 914 (937)
Q Consensus 835 VAT~~~yRgqG~gr~L~~~IE~~l~~lgV~~LvLpA~~ea~~~w~~kfGF~~i~~~el~~~~~~~~~ll~F~gt~~LqK~ 914 (937)
+||+++|||||+|++||...++.|+.+|...+++.-. -.+|.+ |||+......+.- +.. +|.+.+|-+.
T Consensus 81 LaV~p~~qg~GIG~~Lvr~~le~a~~~G~~~v~vlGd---p~YY~r-fGF~~~~~~~l~~------p~~-~~~~~fl~~~ 149 (171)
T COG3153 81 LAVDPEYQGQGIGSALVREGLEALRLAGASAVVVLGD---PTYYSR-FGFEPAAGAKLYA------PGP-VPDERFLALE 149 (171)
T ss_pred EEEchhhcCCcHHHHHHHHHHHHHHHCCCCEEEEecC---cccccc-cCcEEcccccccc------CCC-CCCceEEEEE
Confidence 9999999999999999999999999999999998877 457745 9999988765421 223 6778888887
Q ss_pred ccC
Q 002312 915 VPA 917 (937)
Q Consensus 915 l~~ 917 (937)
|..
T Consensus 150 L~~ 152 (171)
T COG3153 150 LGD 152 (171)
T ss_pred ccC
Confidence 765
No 70
>PRK10809 ribosomal-protein-S5-alanine N-acetyltransferase; Provisional
Probab=97.64 E-value=0.00024 Score=72.35 Aligned_cols=83 Identities=8% Similarity=0.125 Sum_probs=65.8
Q ss_pred eEEEEEeeCCeEEEEEEEEEeCC---eeEEEeeeEeeccccCCChhHHHHHHHHHHhhh-cCccEEEecChh---hhHHH
Q 002312 805 MYCAILTVNSSVVSAGILRVFGQ---EVAELPLVATSKINHGKGYFQLLFACIEKLLSF-LRVKSIVLPAAE---EAESI 877 (937)
Q Consensus 805 fY~~VL~~~~~vVsaA~lri~g~---~vAEiplVAT~~~yRgqG~gr~L~~~IE~~l~~-lgV~~LvLpA~~---ea~~~ 877 (937)
.|.+++..++++||.+.|..... ..+||- +.+.++|||||||+.++.++.+.+.. +|+++|.+.... -+..+
T Consensus 77 ~~~i~~~~~~~~iG~i~l~~~~~~~~~~~eig-~~i~~~~~G~G~~~ea~~~ll~~~~~~l~l~~i~~~v~~~N~~S~~l 155 (194)
T PRK10809 77 YFALLDPDEKEIIGVANFSNVVRGSFHACYLG-YSLGQKWQGQGLMFEALQAAIRYMQRQQHMHRIMANYMPHNKRSGDL 155 (194)
T ss_pred EEEEEECCCCeEEEEEEEEeecCCCeeeEEEE-EEECHHHcCCCHHHHHHHHHHHHHHhcCCceEEEEEeeCCCHHHHHH
Confidence 44544445789999999876542 346655 46899999999999999999999876 899999988755 46789
Q ss_pred HHhccCcEEcCH
Q 002312 878 WTDKFGFKKIDP 889 (937)
Q Consensus 878 w~~kfGF~~i~~ 889 (937)
+++ +||+..+.
T Consensus 156 ~ek-~Gf~~~g~ 166 (194)
T PRK10809 156 LAR-LGFEKEGY 166 (194)
T ss_pred HHH-CCCcEEee
Confidence 998 99997665
No 71
>smart00249 PHD PHD zinc finger. The plant homeodomain (PHD) finger is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in epigenetics and chromatin-mediated transcriptional regulation. The PHD finger binds two zinc ions using the so-called 'cross-brace' motif and is thus structurally related to the PF13302 Acetyltransf_3: Acetyltransferase (GNAT) domain; PDB: 3TTH_C 3JUW_A 2ZXV_A 2Z0Z_A 2VI7_B 3EG7_F 1YRE_C 3IGR_B 3FBU_A 2FCK_A ....
Probab=97.54 E-value=0.00083 Score=63.76 Aligned_cols=80 Identities=16% Similarity=0.210 Sum_probs=62.5
Q ss_pred ceEEEEEee--CCeEEEEEEEEEe--CCeeEEEeeeEeeccccCCChhHHHHHHHHHHh-hhcCccEEEecChhh---hH
Q 002312 804 GMYCAILTV--NSSVVSAGILRVF--GQEVAELPLVATSKINHGKGYFQLLFACIEKLL-SFLRVKSIVLPAAEE---AE 875 (937)
Q Consensus 804 GfY~~VL~~--~~~vVsaA~lri~--g~~vAEiplVAT~~~yRgqG~gr~L~~~IE~~l-~~lgV~~LvLpA~~e---a~ 875 (937)
|+|.+++.. ++++||...++.. ....+||. +.+.++|||+|+|+.++..+.+.+ ..+|+.+|.+....+ +.
T Consensus 55 ~~~~~~i~~~~~~~~iG~i~~~~~~~~~~~~eig-~~i~~~~~g~G~~~~~~~~~~~~~~~~~~~~~i~a~~~~~N~~s~ 133 (142)
T PF13302_consen 55 GYYYFAIEDKDDGEIIGFIGLYNIDKNNNWAEIG-YWIGPDYRGKGYGTEALKLLLDWAFEELGLHRIIATVMADNEASR 133 (142)
T ss_dssp TEEEEEEEETTTTEEEEEEEEEEEETTTTEEEEE-EEEEGGGTTSSHHHHHHHHHHHHHHHTSTSSEEEEEEETT-HHHH
T ss_pred cceEEEEEeccCCceEEEeeeeecccCCCccccc-cchhHHHHhhhHHHHHHHHHHHHHHhcCCcEEEEEEECcCCHHHH
Confidence 355555554 3579999999544 46899999 669999999999999999999999 799999998776553 55
Q ss_pred HHHHhccCcE
Q 002312 876 SIWTDKFGFK 885 (937)
Q Consensus 876 ~~w~~kfGF~ 885 (937)
.++.+ +||+
T Consensus 134 ~~~~k-~GF~ 142 (142)
T PF13302_consen 134 RLLEK-LGFE 142 (142)
T ss_dssp HHHHH-TT-E
T ss_pred HHHHH-cCCC
Confidence 67777 9995
No 73
>PRK10151 ribosomal-protein-L7/L12-serine acetyltransferase; Provisional
Probab=97.53 E-value=0.00058 Score=68.60 Aligned_cols=81 Identities=7% Similarity=0.070 Sum_probs=64.1
Q ss_pred EEEeeCCeEEEEEEEEEeCC--eeEEEeeeEeeccccCCChhHHHHHHHHHHhh-hcCccEEEecChh---hhHHHHHhc
Q 002312 808 AILTVNSSVVSAGILRVFGQ--EVAELPLVATSKINHGKGYFQLLFACIEKLLS-FLRVKSIVLPAAE---EAESIWTDK 881 (937)
Q Consensus 808 ~VL~~~~~vVsaA~lri~g~--~vAEiplVAT~~~yRgqG~gr~L~~~IE~~l~-~lgV~~LvLpA~~---ea~~~w~~k 881 (937)
+++..+|++||.+.++.... ..+|+-. .+.++|||||||+.++.++.+.+. .+|+++|.+.... .+..++++
T Consensus 70 ~~i~~~~~~iG~~~l~~~~~~~~~~~ig~-~i~~~~~g~G~~tea~~~l~~~~~~~~~~~ri~~~v~~~N~~S~~v~ek- 147 (179)
T PRK10151 70 FMIFKEDELIGVLSFNRIEPLNKTAYIGY-WLDESHQGQGIISQALQALIHHYAQSGELRRFVIKCRVDNPASNQVALR- 147 (179)
T ss_pred EEEEECCEEEEEEEEEeeccCCCceEEEE-EEChhhcCCcHHHHHHHHHHHHHHhhCCccEEEEEEcCCCHHHHHHHHH-
Confidence 33356899999999876543 5688875 689999999999999999999776 5789998876544 36778887
Q ss_pred cCcEEcCHH
Q 002312 882 FGFKKIDPE 890 (937)
Q Consensus 882 fGF~~i~~~ 890 (937)
+||+..+..
T Consensus 148 ~Gf~~~g~~ 156 (179)
T PRK10151 148 NGFTLEGCL 156 (179)
T ss_pred CCCEEEeEe
Confidence 999987653
No 74
>KOG3397 consensus Acetyltransferases [General function prediction only]
Probab=97.51 E-value=0.00015 Score=74.12 Aligned_cols=77 Identities=19% Similarity=0.299 Sum_probs=63.4
Q ss_pred CCeEEEEEEEEEeC--CeeEEEeeeEeeccccCCChhHHHHHHHHHHhhhcCccEEEecChhhhHHHHHhccCcEEcCHH
Q 002312 813 NSSVVSAGILRVFG--QEVAELPLVATSKINHGKGYFQLLFACIEKLLSFLRVKSIVLPAAEEAESIWTDKFGFKKIDPE 890 (937)
Q Consensus 813 ~~~vVsaA~lri~g--~~vAEiplVAT~~~yRgqG~gr~L~~~IE~~l~~lgV~~LvLpA~~ea~~~w~~kfGF~~i~~~ 890 (937)
+.+|||-++|--.. ...--+-.|.|...+||||+|+.||+..|..++..|++++.|.+.++ ..||++ +||+.-+.-
T Consensus 65 ~~~VigH~rLS~i~n~~~al~VEsVVV~k~~RG~GFGk~lMk~~E~~~R~~gf~~~yLsT~DQ-~~FYe~-lGYe~c~Pi 142 (225)
T KOG3397|consen 65 NDEVLGHSRLSHLPNRDHALWVESVVVKKDQRGLGFGKFLMKSTEKWMREKGFNEAYLSTDDQ-CRFYES-LGYEKCDPI 142 (225)
T ss_pred ccceeeeeccccCCCCCceeEEEEEEEehhhccccHHHHHHHHHHHHHHHhhhhheeeecccc-hhhhhh-hcccccCce
Confidence 46777766664333 24667889999999999999999999999999999999999988755 679999 999977664
Q ss_pred H
Q 002312 891 L 891 (937)
Q Consensus 891 e 891 (937)
+
T Consensus 143 ~ 143 (225)
T KOG3397|consen 143 V 143 (225)
T ss_pred e
Confidence 3
No 75
>COG5034 TNG2 Chromatin remodeling protein, contains PhD zinc finger [Chromatin structure and dynamics]
Probab=97.51 E-value=9.4e-05 Score=79.26 Aligned_cols=51 Identities=37% Similarity=1.018 Sum_probs=42.0
Q ss_pred cccCCcccccccCccCCcCcccccCCCCceecccC--CCcc-cccccCCCCCCCCCCcccccccc
Q 002312 541 YKNGLGIICHCCNSEVSPSQFEAHADGGNLLPCDG--CPRA-FHKECASLSSIPQGDWYCKYCQN 602 (937)
Q Consensus 541 ~k~~~~i~C~~C~~eiSpS~FE~HAdgG~Ll~CDg--Cp~a-fH~~CL~L~~vPeG~W~Cp~C~~ 602 (937)
...++.-+|.| ++. ..|+|+-||+ |.+- ||+.|++|...|.|.|||+.|+.
T Consensus 216 ~se~e~lYCfC-qqv----------SyGqMVaCDn~nCkrEWFH~~CVGLk~pPKG~WYC~eCk~ 269 (271)
T COG5034 216 NSEGEELYCFC-QQV----------SYGQMVACDNANCKREWFHLECVGLKEPPKGKWYCPECKK 269 (271)
T ss_pred cccCceeEEEe-ccc----------ccccceecCCCCCchhheeccccccCCCCCCcEeCHHhHh
Confidence 33566777864 432 4799999994 9997 99999999999999999999974
No 76
>KOG1973 consensus Chromatin remodeling protein, contains PHD Zn-finger [Chromatin structure and dynamics]
Probab=97.43 E-value=6.3e-05 Score=82.55 Aligned_cols=49 Identities=35% Similarity=0.910 Sum_probs=40.8
Q ss_pred CCcccccccCccCCcCcccccCCCCceecccC--CCc-ccccccCCCCCCCCCCccccccccc
Q 002312 544 GLGIICHCCNSEVSPSQFEAHADGGNLLPCDG--CPR-AFHKECASLSSIPQGDWYCKYCQNM 603 (937)
Q Consensus 544 ~~~i~C~~C~~eiSpS~FE~HAdgG~Ll~CDg--Cp~-afH~~CL~L~~vPeG~W~Cp~C~~~ 603 (937)
++.-+|.|... .+|+|+-||+ |+. =||+.|++|..-|.|.|||+.|+..
T Consensus 217 ~e~~yC~Cnqv-----------syg~Mi~CDn~~C~~eWFH~~CVGL~~~PkgkWyC~~C~~~ 268 (274)
T KOG1973|consen 217 DEPTYCICNQV-----------SYGKMIGCDNPGCPIEWFHFTCVGLKTKPKGKWYCPRCKAE 268 (274)
T ss_pred CCCEEEEeccc-----------ccccccccCCCCCCcceEEEeccccccCCCCcccchhhhhh
Confidence 34567776642 5899999997 995 5999999999999999999999853
No 77
>COG1247 Sortase and related acyltransferases [Cell envelope biogenesis, outer membrane]
Probab=97.30 E-value=0.001 Score=68.47 Aligned_cols=115 Identities=16% Similarity=0.179 Sum_probs=83.7
Q ss_pred CCCceecceEEEEEeeC-CeEEEEEEEEEeCC-----eeEEEeeeEeeccccCCChhHHHHHHHHHHhhhcCccEEEec-
Q 002312 797 LRGQEFGGMYCAILTVN-SSVVSAGILRVFGQ-----EVAELPLVATSKINHGKGYFQLLFACIEKLLSFLRVKSIVLP- 869 (937)
Q Consensus 797 ~~~~~f~GfY~~VL~~~-~~vVsaA~lri~g~-----~vAEiplVAT~~~yRgqG~gr~L~~~IE~~l~~lgV~~LvLp- 869 (937)
|....=.||+.+|++.+ |+++|=|.+..|.. .++|. .|=+++++||+|+|++|++++.+.+..+|++.++..
T Consensus 44 ~~~~~~~g~p~~V~~~~~g~v~G~a~~~~fr~r~ay~~tve~-SiYv~~~~~g~GiG~~Ll~~Li~~~~~~g~~~lva~I 122 (169)
T COG1247 44 FSGRTRDGYPVVVAEEEDGKVLGYASAGPFRERPAYRHTVEL-SIYLDPAARGKGLGKKLLQALITEARALGVRELVAGI 122 (169)
T ss_pred HHhcccCCceEEEEEcCCCeEEEEEEeeeccCccccceEEEE-EEEECcccccccHHHHHHHHHHHHHHhCCeEEEEEEE
Confidence 33344456899998866 99999998877663 35554 456899999999999999999999999999987643
Q ss_pred -ChhhhHHHHHhccCcEEcCHHHHHHHHhhCCceeeeCCCeeeeecccC
Q 002312 870 -AAEEAESIWTDKFGFKKIDPELLSIYRKRCSQLVTFKGTSMLQKRVPA 917 (937)
Q Consensus 870 -A~~ea~~~w~~kfGF~~i~~~el~~~~~~~~~ll~F~gt~~LqK~l~~ 917 (937)
+...|.--...+|||...+.....- ...-.+-.+.+||+.|..
T Consensus 123 ~~~n~aSi~lh~~~GF~~~G~~~~vg-----~k~g~wld~~~~~~~l~~ 166 (169)
T COG1247 123 ESDNLASIALHEKLGFEEVGTFPEVG-----DKFGRWLDLVLMQLLLEE 166 (169)
T ss_pred cCCCcHhHHHHHHCCCEEeccccccc-----cccceEEeeeeeehhhcc
Confidence 2333444555569999998844321 133456677888887754
No 78
>COG5034 TNG2 Chromatin remodeling protein, contains PhD zinc finger [Chromatin structure and dynamics]
Probab=97.27 E-value=0.00011 Score=78.74 Aligned_cols=49 Identities=39% Similarity=1.026 Sum_probs=39.5
Q ss_pred cccCCccccccCCCCCCCCCCCCceeeCC--CCC-CcCCCCCCCcCcCCcccCCCCCcceecCCccc
Q 002312 643 EAELSGCLLCRGCDFSKSGFGPRTILLCD--QCE-REFHVGCLKKHKMADLRELPKGKWFCCMDCSR 706 (937)
Q Consensus 643 e~e~~~C~vC~~~df~~sgf~~~tLL~CD--qCd-r~yHv~CL~p~~~~~L~evP~g~WfCc~~C~~ 706 (937)
+++..+|+ |.+.. =+.|+-|| .|+ -|||+.|+ .|++.|+|.||| ++|+.
T Consensus 218 e~e~lYCf-CqqvS-------yGqMVaCDn~nCkrEWFH~~CV------GLk~pPKG~WYC-~eCk~ 269 (271)
T COG5034 218 EGEELYCF-CQQVS-------YGQMVACDNANCKREWFHLECV------GLKEPPKGKWYC-PECKK 269 (271)
T ss_pred cCceeEEE-ecccc-------cccceecCCCCCchhheecccc------ccCCCCCCcEeC-HHhHh
Confidence 34456787 88764 35899999 688 57999999 689999999999 89964
No 79
>KOG1473 consensus Nucleosome remodeling factor, subunit NURF301/BPTF [Chromatin structure and dynamics; Transcription]
Probab=97.25 E-value=6.1e-05 Score=92.76 Aligned_cols=126 Identities=25% Similarity=0.405 Sum_probs=81.8
Q ss_pred CCcccccccCccCCcCcccccCCCCceecccCCCcccccccCC--CCCCCCCCcccccccccccccccccccccccccCc
Q 002312 544 GLGIICHCCNSEVSPSQFEAHADGGNLLPCDGCPRAFHKECAS--LSSIPQGDWYCKYCQNMFERKRFLQHDANAVEAGR 621 (937)
Q Consensus 544 ~~~i~C~~C~~eiSpS~FE~HAdgG~Ll~CDgCp~afH~~CL~--L~~vPeG~W~Cp~C~~~~~~ek~l~~n~naia~gr 621 (937)
.-+++|..|+ |.|+++||..||+.||+.|+. .-.+|+..|.|--|.. ++. |. .
T Consensus 342 ~~ddhcrf~~------------d~~~~lc~Et~prvvhlEcv~hP~~~~~s~~~e~evc~~--hkv-------ng----v 396 (1414)
T KOG1473|consen 342 EYDDHCRFCH------------DLGDLLCCETCPRVVHLECVFHPRFAVPSAFWECEVCNI--HKV-------NG----V 396 (1414)
T ss_pred eecccccccC------------cccceeecccCCceEEeeecCCccccCCCccchhhhhhh--hcc-------Cc----c
Confidence 4468899999 899999999999999999996 5678999999999973 111 11 0
Q ss_pred cccccchh-hhhhhhhhhhc--------cccccCCccccccCCCCCCCCCCCCceeeCCC-CCCcCCC-CCCCcCcCCcc
Q 002312 622 VSGVDSVE-QITKRCIRIVK--------NLEAELSGCLLCRGCDFSKSGFGPRTILLCDQ-CEREFHV-GCLKKHKMADL 690 (937)
Q Consensus 622 ~~Gvd~ie-qi~~R~iR~vk--------d~e~e~~~C~vC~~~df~~sgf~~~tLL~CDq-Cdr~yHv-~CL~p~~~~~L 690 (937)
+.++-+.+ .+. .+|... +......-|.+|+. +++++-|+. |.+.||. .||+..- --
T Consensus 397 vd~vl~~~K~~~--~iR~~~iG~dr~gr~ywfi~rrl~Ie~~---------det~l~yysT~pqly~ll~cLd~~~--~e 463 (1414)
T KOG1473|consen 397 VDCVLPPSKNVD--SIRHTPIGRDRYGRKYWFISRRLRIEGM---------DETLLWYYSTCPQLYHLLRCLDRTY--VE 463 (1414)
T ss_pred cccccChhhccc--ceeccCCCcCccccchhceeeeeEEecC---------CCcEEEEecCcHHHHHHHHHhchHH--HH
Confidence 11111110 000 011100 01111234899984 468899997 9999999 9997421 11
Q ss_pred cCCCCCcceecCCccchh
Q 002312 691 RELPKGKWFCCMDCSRIN 708 (937)
Q Consensus 691 ~evP~g~WfCc~~C~~I~ 708 (937)
..++.+-|+| .+|-.-+
T Consensus 464 ~~L~d~i~~~-~ee~~rq 480 (1414)
T KOG1473|consen 464 MYLCDGIWER-REEIIRQ 480 (1414)
T ss_pred Hhhccchhhh-HHHHHHh
Confidence 2568899999 7885433
No 80
>KOG1973 consensus Chromatin remodeling protein, contains PHD Zn-finger [Chromatin structure and dynamics]
Probab=97.24 E-value=0.0001 Score=80.91 Aligned_cols=36 Identities=39% Similarity=1.022 Sum_probs=31.4
Q ss_pred CCceeeCCC--CC-CcCCCCCCCcCcCCcccCCCCCcceecCCccc
Q 002312 664 PRTILLCDQ--CE-REFHVGCLKKHKMADLRELPKGKWFCCMDCSR 706 (937)
Q Consensus 664 ~~tLL~CDq--Cd-r~yHv~CL~p~~~~~L~evP~g~WfCc~~C~~ 706 (937)
-+.|+.||. |+ .|||..|+ .|+..|.|+||| +.|..
T Consensus 229 yg~Mi~CDn~~C~~eWFH~~CV------GL~~~PkgkWyC-~~C~~ 267 (274)
T KOG1973|consen 229 YGKMIGCDNPGCPIEWFHFTCV------GLKTKPKGKWYC-PRCKA 267 (274)
T ss_pred cccccccCCCCCCcceEEEecc------ccccCCCCcccc-hhhhh
Confidence 468999997 99 99999999 578889999999 58853
No 81
>KOG4443 consensus Putative transcription factor HALR/MLL3, involved in embryonic development [General function prediction only]
Probab=97.13 E-value=0.00019 Score=85.11 Aligned_cols=139 Identities=24% Similarity=0.501 Sum_probs=83.7
Q ss_pred eccccccCCcccccccCccCCcCcccccCCCCceecccCCCcccccccCC--CCCCCCCCcccccccccccccccccccc
Q 002312 537 LLEGYKNGLGIICHCCNSEVSPSQFEAHADGGNLLPCDGCPRAFHKECAS--LSSIPQGDWYCKYCQNMFERKRFLQHDA 614 (937)
Q Consensus 537 l~~G~k~~~~i~C~~C~~eiSpS~FE~HAdgG~Ll~CDgCp~afH~~CL~--L~~vPeG~W~Cp~C~~~~~~ek~l~~n~ 614 (937)
+-.||-....-+|..|+.- .|.+.+++|+.|+-+||-+|.. ...||.|.|+|+.|...-+.+..++.+.
T Consensus 59 l~~gWrC~~crvCe~c~~~---------gD~~kf~~Ck~cDvsyh~yc~~P~~~~v~sg~~~ckk~~~c~qc~~~lpg~s 129 (694)
T KOG4443|consen 59 LSGGWRCPSCRVCEACGTT---------GDPKKFLLCKRCDVSYHCYCQKPPNDKVPSGPWLCKKCTRCRQCDSTLPGLS 129 (694)
T ss_pred hcCCcccCCceeeeecccc---------CCcccccccccccccccccccCCccccccCcccccHHHHhhhhccccccccc
Confidence 3456766777788888731 1678999999999999999996 6789999999999975443333222111
Q ss_pred cccccCccccccchhhhhhhhhhhhccccccCCccccccCCCCCCCCCCCCceeeCCCCCCcCCCCCCCcCcCCcc-cCC
Q 002312 615 NAVEAGRVSGVDSVEQITKRCIRIVKNLEAELSGCLLCRGCDFSKSGFGPRTILLCDQCEREFHVGCLKKHKMADL-REL 693 (937)
Q Consensus 615 naia~gr~~Gvd~ieqi~~R~iR~vkd~e~e~~~C~vC~~~df~~sgf~~~tLL~CDqCdr~yHv~CL~p~~~~~L-~ev 693 (937)
.++.+-. ..|+ .......|.+|.... +.. ..-.++.|++|.+|-|-.|-.-..+.-+ ..+
T Consensus 130 ----------~~~~~~~-~~~~-----~c~s~~~cPvc~~~Y--~~~-e~~~~~~c~~c~rwsh~~c~~~sdd~~~q~~v 190 (694)
T KOG4443|consen 130 ----------LDLQEGY-LQCA-----PCASLSYCPVCLIVY--QDS-ESLPMVCCSICQRWSHGGCDGISDDKYMQAQV 190 (694)
T ss_pred ----------hhhhccC-cccc-----cccccccCchHHHhh--hhc-cchhhHHHHHhcccccCCCCccchHHHHHHhh
Confidence 1110000 0000 111134577776532 111 2234589999999999999865432111 111
Q ss_pred CCCcceecCCcc
Q 002312 694 PKGKWFCCMDCS 705 (937)
Q Consensus 694 P~g~WfCc~~C~ 705 (937)
.-.+.| ..|.
T Consensus 191 -D~~~~C-S~CR 200 (694)
T KOG4443|consen 191 -DLQYKC-STCR 200 (694)
T ss_pred -hhhccc-ceee
Confidence 124667 7886
No 82
>KOG0957 consensus PHD finger protein [General function prediction only]
Probab=97.05 E-value=0.00022 Score=81.89 Aligned_cols=128 Identities=29% Similarity=0.588 Sum_probs=74.9
Q ss_pred cccccCccCCcCcccccCCCCceecccCCCcccccccCCCC---CCCC-------CCccccccccccc-ccccccccccc
Q 002312 548 ICHCCNSEVSPSQFEAHADGGNLLPCDGCPRAFHKECASLS---SIPQ-------GDWYCKYCQNMFE-RKRFLQHDANA 616 (937)
Q Consensus 548 ~C~~C~~eiSpS~FE~HAdgG~Ll~CDgCp~afH~~CL~L~---~vPe-------G~W~Cp~C~~~~~-~ek~l~~n~na 616 (937)
+|.+|...-+. |-|+++-||.|+...|..|++.. .||. ..|||--|+..+. +.--+.+|...
T Consensus 121 iCcVClg~rs~-------da~ei~qCd~CGi~VHEgCYGv~dn~si~s~~s~~stepWfCeaC~~Gvs~P~CElCPn~~G 193 (707)
T KOG0957|consen 121 ICCVCLGQRSV-------DAGEILQCDKCGINVHEGCYGVLDNVSIPSGSSDCSTEPWFCEACLYGVSLPHCELCPNRFG 193 (707)
T ss_pred EEEEeecCccc-------cccceeeccccCceecccccccccccccCCCCccCCCCchhhhhHhcCCCCCccccCCCcCC
Confidence 68888765433 78999999999999999999832 3443 3599999986532 11111112111
Q ss_pred cc-------------cCccccccchhhhhhhhhhhhcccc---ccCCccccccCCCCCCCCCCCCceeeCC--CCCCcCC
Q 002312 617 VE-------------AGRVSGVDSVEQITKRCIRIVKNLE---AELSGCLLCRGCDFSKSGFGPRTILLCD--QCEREFH 678 (937)
Q Consensus 617 ia-------------~gr~~Gvd~ieqi~~R~iR~vkd~e---~e~~~C~vC~~~df~~sgf~~~tLL~CD--qCdr~yH 678 (937)
+. +=...|+- ..++..++.-.+..++ +-...|..|...-|.+.| ..+.|| .|..+||
T Consensus 194 ifKetDigrWvH~iCALYvpGVa-fg~~~~l~~Vtl~em~ysk~Gak~Cs~Ced~~fARtG----vci~CdaGMCk~YfH 268 (707)
T KOG0957|consen 194 IFKETDIGRWVHAICALYVPGVA-FGQTHTLCGVTLEEMDYSKFGAKTCSACEDKIFARTG----VCIRCDAGMCKEYFH 268 (707)
T ss_pred cccccchhhHHHHHHHhhcCccc-cccccccccccHHHhhhhhhccchhccccchhhhhcc----eeeeccchhhhhhhh
Confidence 10 00011111 0111111111122222 222359999988776554 578898 7999999
Q ss_pred CCCCCcCcC
Q 002312 679 VGCLKKHKM 687 (937)
Q Consensus 679 v~CL~p~~~ 687 (937)
+.|.+-.|+
T Consensus 269 VTCAQk~Gl 277 (707)
T KOG0957|consen 269 VTCAQKLGL 277 (707)
T ss_pred hhHHhhhcc
Confidence 999987653
No 83
>KOG3216 consensus Diamine acetyltransferase [Amino acid transport and metabolism]
Probab=97.01 E-value=0.008 Score=60.87 Aligned_cols=124 Identities=17% Similarity=0.144 Sum_probs=91.7
Q ss_pred hhhHHHHHHHHHhhhhcCCCcccCCCCCCccccccccccCCCceecceEEEEEee-CCeEEEEEEEEEe-----CCeeEE
Q 002312 758 PETRLLLSQAVAIFHDCFDPIVDSISGRDLIPSMVYGRNLRGQEFGGMYCAILTV-NSSVVSAGILRVF-----GQEVAE 831 (937)
Q Consensus 758 ~e~~~~La~AL~If~EcF~Pivd~~TgrDLIp~MVy~r~~~~~~f~GfY~~VL~~-~~~vVsaA~lri~-----g~~vAE 831 (937)
.+.-.+|-.-++.|.++=+|.+- |..+|-.+- |..-.|.-.+.+.++. ++++||-|.+..+ |.+.--
T Consensus 14 ~~~i~rLikela~Fek~~~~v~~--te~~l~~~~-----F~d~~~~~~~v~~ie~~~~~~aGf~~yf~~ystW~~k~~iY 86 (163)
T KOG3216|consen 14 CEDILRLIKELAEFEKLEDQVEA--TEENLARDG-----FIDPPFKHWLVAAIETSGEVVAGFALYFNNYSTWLGKQGIY 86 (163)
T ss_pred HHHHHHHHHHHHHHHHhccchhh--chhhhhhhh-----ccCCCccEEEEEEEecCCCceeEEeeeecccccccccceEE
Confidence 34445666778888888777644 444544432 3333444455555555 8899999987653 335566
Q ss_pred EeeeEeeccccCCChhHHHHHHHHHHhhhcCccEE---EecChhhhHHHHHhccCcEEcCH
Q 002312 832 LPLVATSKINHGKGYFQLLFACIEKLLSFLRVKSI---VLPAAEEAESIWTDKFGFKKIDP 889 (937)
Q Consensus 832 iplVAT~~~yRgqG~gr~L~~~IE~~l~~lgV~~L---vLpA~~ea~~~w~~kfGF~~i~~ 889 (937)
|-=+=|+++|||+|+|+.|++.+-+.+..+|..++ ++.--.-|+.+|++ .|++..++
T Consensus 87 leDlyV~e~yR~kG~Gs~Ll~~va~~A~~~G~~rv~w~vldwN~rAi~lY~k-~gaq~l~~ 146 (163)
T KOG3216|consen 87 LEDLYVREQYRGKGIGSKLLKFVAEEADKLGTPRVEWVVLDWNHRAILLYEK-VGAQDLKE 146 (163)
T ss_pred EEeeEecchhcccChHHHHHHHHHHHHHHcCCCcEEEEEeccchhHHHHHHH-hCccccce
Confidence 77788999999999999999999999999999874 56666679999999 99997766
No 84
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=97.01 E-value=0.00025 Score=84.83 Aligned_cols=48 Identities=33% Similarity=0.879 Sum_probs=39.6
Q ss_pred CcccccccCccCCcCcccccCCCCceecccCCCcc-cccccCC--CCCCCCCCccccccc
Q 002312 545 LGIICHCCNSEVSPSQFEAHADGGNLLPCDGCPRA-FHKECAS--LSSIPQGDWYCKYCQ 601 (937)
Q Consensus 545 ~~i~C~~C~~eiSpS~FE~HAdgG~Ll~CDgCp~a-fH~~CL~--L~~vPeG~W~Cp~C~ 601 (937)
+...|.+|... ...+-||+||+|..+ ||.+||+ |.++|-+.|||++|.
T Consensus 214 E~~~C~IC~~~---------DpEdVLLLCDsCN~~~YH~YCLDPdl~eiP~~eWYC~NC~ 264 (1134)
T KOG0825|consen 214 EEVKCDICTVH---------DPEDVLLLCDSCNKVYYHVYCLDPDLSESPVNEWYCTNCS 264 (1134)
T ss_pred ccccceeeccC---------ChHHhheeecccccceeeccccCcccccccccceecCcch
Confidence 34568889842 235678999999999 9999997 567999999999995
No 85
>PF13831 PHD_2: PHD-finger; PDB: 2L43_A 2KU3_A.
Probab=96.67 E-value=0.00043 Score=53.97 Aligned_cols=34 Identities=44% Similarity=1.111 Sum_probs=21.0
Q ss_pred CceecccCCCcccccccCCCCCCCCC-Cccccccc
Q 002312 568 GNLLPCDGCPRAFHKECASLSSIPQG-DWYCKYCQ 601 (937)
Q Consensus 568 G~Ll~CDgCp~afH~~CL~L~~vPeG-~W~Cp~C~ 601 (937)
+.|+.|++|.-.+|+.|+++..+|.+ +|+|..|+
T Consensus 2 n~ll~C~~C~v~VH~~CYGv~~~~~~~~W~C~~C~ 36 (36)
T PF13831_consen 2 NPLLFCDNCNVAVHQSCYGVSEVPDGDDWLCDRCE 36 (36)
T ss_dssp CEEEE-SSS--EEEHHHHT-SS--SS-----HHH-
T ss_pred CceEEeCCCCCcCChhhCCcccCCCCCcEECCcCC
Confidence 46899999999999999999999988 79999884
No 86
>KOG0957 consensus PHD finger protein [General function prediction only]
Probab=96.64 E-value=0.00074 Score=77.79 Aligned_cols=58 Identities=29% Similarity=0.780 Sum_probs=44.5
Q ss_pred CccccccCCCCCCCCCCCCceeeCCCCCCcCCCCCCCcCcCCcccCCCC----CcceecCCc--cchhHHHHHhh
Q 002312 647 SGCLLCRGCDFSKSGFGPRTILLCDQCEREFHVGCLKKHKMADLRELPK----GKWFCCMDC--SRINSVLQNLL 715 (937)
Q Consensus 647 ~~C~vC~~~df~~sgf~~~tLL~CDqCdr~yHv~CL~p~~~~~L~evP~----g~WfCc~~C--~~I~~~LqkLV 715 (937)
-.|.+|++.. +--.+++||.|...||++||.| ||+.+|+ ..|.| ..| ......-++++
T Consensus 545 ysCgiCkks~------dQHll~~CDtC~lhYHlGCL~P----PLTR~Pkk~kn~gWqC-sECdk~esSD~e~ei~ 608 (707)
T KOG0957|consen 545 YSCGICKKST------DQHLLTQCDTCHLHYHLGCLSP----PLTRLPKKNKNFGWQC-SECDKNESSDSEQEII 608 (707)
T ss_pred eeeeeeccch------hhHHHhhcchhhceeeccccCC----ccccCcccccCcceee-cccccccCcchhhhhc
Confidence 3599999763 4456799999999999999998 7888886 46999 899 34444444444
No 87
>cd04718 BAH_plant_2 BAH, or Bromo Adjacent Homology domain, plant-specific sub-family with unknown function. BAH domains are found in a variety of proteins playing roles in transcriptional silencing and the remodeling of chromatin. It is assumed that in most or all of these instances the BAH domain mediates protein-protein interactions.
Probab=96.51 E-value=0.0013 Score=66.27 Aligned_cols=27 Identities=41% Similarity=1.032 Sum_probs=24.0
Q ss_pred cCCCCCCCcCcCCcccCCCCCcceecCCccch
Q 002312 676 EFHVGCLKKHKMADLRELPKGKWFCCMDCSRI 707 (937)
Q Consensus 676 ~yHv~CL~p~~~~~L~evP~g~WfCc~~C~~I 707 (937)
.||+.||+| ||+++|+|+|+| +.|..-
T Consensus 1 g~H~~CL~P----pl~~~P~g~W~C-p~C~~~ 27 (148)
T cd04718 1 GFHLCCLRP----PLKEVPEGDWIC-PFCEVE 27 (148)
T ss_pred CcccccCCC----CCCCCCCCCcCC-CCCcCC
Confidence 599999998 899999999999 889643
No 88
>PF12746 GNAT_acetyltran: GNAT acetyltransferase; PDB: 3G3S_B.
Probab=96.50 E-value=0.015 Score=63.89 Aligned_cols=77 Identities=16% Similarity=-0.016 Sum_probs=55.2
Q ss_pred eeCCeEEEEEEEEEeCCeeEEEeeeEeeccccCCChhHHHHHHHHHHhhhcCccEEEecChhhhHHHHHhccCcEEcCH
Q 002312 811 TVNSSVVSAGILRVFGQEVAELPLVATSKINHGKGYFQLLFACIEKLLSFLRVKSIVLPAAEEAESIWTDKFGFKKIDP 889 (937)
Q Consensus 811 ~~~~~vVsaA~lri~g~~vAEiplVAT~~~yRgqG~gr~L~~~IE~~l~~lgV~~LvLpA~~ea~~~w~~kfGF~~i~~ 889 (937)
..+|+|||.|.-.....+.+||- |+|+++|||||+++++..++......-|+--.|=-+ ..+-----.|+||+...+
T Consensus 171 ~~~~~iVs~~~s~~~~~~~~EI~-I~T~~~yR~kGLA~~~aa~~I~~Cl~~~l~P~WDc~-N~~S~~lA~kLGf~~~~~ 247 (265)
T PF12746_consen 171 LHDGEIVSGCSSYFVYENGIEID-IETHPEYRGKGLATAVAAAFILECLENGLYPSWDCH-NLASIALAEKLGFHFDFE 247 (265)
T ss_dssp EETTEEEEEEEEEEEETTEEEEE-EEE-CCCTTSSHHHHHHHHHHHHHHHTT-EEE-EES-SHHHHHHHHHCT--EEEE
T ss_pred EECCEEEEEEEEEEEECCEEEEE-EEECHHhhcCCHHHHHHHHHHHHHHHCCCCcCeeCC-CHHHHHHHHHcCCcccce
Confidence 56899999777666666778986 799999999999999999999999999988877543 333223334699986544
No 89
>COG1444 Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only]
Probab=96.40 E-value=0.011 Score=72.83 Aligned_cols=58 Identities=16% Similarity=0.095 Sum_probs=49.7
Q ss_pred EEEeeeEeeccccCCChhHHHHHHHHHHhhhcCccEEEe--cChhhhHHHHHhccCcEEcCH
Q 002312 830 AELPLVATSKINHGKGYFQLLFACIEKLLSFLRVKSIVL--PAAEEAESIWTDKFGFKKIDP 889 (937)
Q Consensus 830 AEiplVAT~~~yRgqG~gr~L~~~IE~~l~~lgV~~LvL--pA~~ea~~~w~~kfGF~~i~~ 889 (937)
|.|-+|||+|++|++|||++|++.+.++++ .|+..|-. .+.++...||.+ .||.++--
T Consensus 532 ~RIvRIAvhPe~q~~GiGsrlL~~l~~~a~-~~~DwlgvsFG~t~~L~rFW~r-nGF~pVhl 591 (758)
T COG1444 532 WRIVRIAVHPELQRMGIGSRLLALLIEEAR-KGLDWLGVSFGYTEELLRFWLR-NGFVPVHL 591 (758)
T ss_pred eeEEEEEeCHHHHhcCHHHHHHHHHHHHHh-cCCCEEeeccCCCHHHHHHHHH-cCeEEEEe
Confidence 788999999999999999999999999986 45555444 478899999999 99998754
No 90
>PF08444 Gly_acyl_tr_C: Aralkyl acyl-CoA:amino acid N-acyltransferase, C-terminal region; InterPro: IPR013652 This entry represents mammalian-specific glycine N-acyltransferase (also called aralkyl acyl-CoA:amino acid N-acyltransferase; 2.3.1.13 from EC). Mitochondrial acyltransferases catalyse the transfer of an acyl group from acyl-CoA to the N terminus of glycine to produce N-acylglycine. These enzymes can conjugate a multitude of substrates to form a variety of N-acylglycines. The CoA derivatives of a number of aliphatic and aromatic acids, but not phenylacetyl-CoA or (indol-3-yl)acetyl-CoA, can act as donor [, ].
Probab=96.35 E-value=0.0066 Score=56.48 Aligned_cols=75 Identities=16% Similarity=0.180 Sum_probs=57.0
Q ss_pred EEeeCCeEEEEEEEEEeCCeeEEEeeeEeeccccCCChhHHHHHHHHHHhhhcCccE-EEecC-hhhhHHHHHhccCcEE
Q 002312 809 ILTVNSSVVSAGILRVFGQEVAELPLVATSKINHGKGYFQLLFACIEKLLSFLRVKS-IVLPA-AEEAESIWTDKFGFKK 886 (937)
Q Consensus 809 VL~~~~~vVsaA~lri~g~~vAEiplVAT~~~yRgqG~gr~L~~~IE~~l~~lgV~~-LvLpA-~~ea~~~w~~kfGF~~ 886 (937)
||--+|.+||=.. -+..+||+.-.|.|+|||||+.+.++....+.|..+|+.- ..+.- -...+.+-.+ +||..
T Consensus 3 llgpeG~PVSW~l----mdqtge~rmgyTlPeyR~~G~~~~v~~~~~~~L~~~g~P~Y~hv~~~N~~~~r~~~~-lg~~~ 77 (89)
T PF08444_consen 3 LLGPEGNPVSWSL----MDQTGEMRMGYTLPEYRGQGLMSQVMYHLAQYLHKLGFPFYGHVDEDNEASQRLSKS-LGFIF 77 (89)
T ss_pred ccCCCCCEeEEEE----ecccccccccccCHhHhcCCHHHHHHHHHHHHHHHCCCCeEeehHhccHHHHHHHHH-CCCee
Confidence 3445688888554 4578999999999999999999999999999999999984 22222 2333444444 89887
Q ss_pred cC
Q 002312 887 ID 888 (937)
Q Consensus 887 i~ 888 (937)
++
T Consensus 78 ~p 79 (89)
T PF08444_consen 78 MP 79 (89)
T ss_pred cC
Confidence 75
No 91
>PF14542 Acetyltransf_CG: GCN5-related N-acetyl-transferase; PDB: 2H5M_A 2Q44_A 1XMT_A 2Q4Y_A 2IL4_A 2EVN_A 1R57_A.
Probab=96.26 E-value=0.02 Score=51.59 Aligned_cols=59 Identities=12% Similarity=0.016 Sum_probs=50.4
Q ss_pred EEEeeCCeEEEEEEEEEeCCeeEEEeeeEeeccccCCChhHHHHHHHHHHhhhcCccEEE
Q 002312 808 AILTVNSSVVSAGILRVFGQEVAELPLVATSKINHGKGYFQLLFACIEKLLSFLRVKSIV 867 (937)
Q Consensus 808 ~VL~~~~~vVsaA~lri~g~~vAEiplVAT~~~yRgqG~gr~L~~~IE~~l~~lgV~~Lv 867 (937)
+.+..+|+.+|...++. ..++..|--.-|.+++||||+|+.||+++.+.++.-|.+-+-
T Consensus 2 F~~~~~g~~~a~l~Y~~-~~~~~~i~hT~V~~~~rGqGia~~L~~~~l~~a~~~~~kv~p 60 (78)
T PF14542_consen 2 FELKDDGEEIAELTYRE-DGGVIVITHTEVPPELRGQGIAKKLVEAALDYARENGLKVVP 60 (78)
T ss_dssp EEEESSTTEEEEEEEEE-SSSEEEEEEEEE-CSSSTTTHHHHHHHHHHHHHHHTT-EEEE
T ss_pred EEEEECCEEEEEEEEEe-CCCEEEEEEEEECccccCCcHHHHHHHHHHHHHHHCCCEEEE
Confidence 34567789999999988 668999999999999999999999999999999999987553
No 92
>PF12568 DUF3749: Acetyltransferase (GNAT) domain; InterPro: IPR024612 This domain is found in uncharacterised proteins from Gammaproteobacteria, and is approximately 40 amino acids in length. It contains two completely conserved residues (D and I) that may be functionally important. Proteins having this domain are frequently annotated as acetyltransferases of the GNAT family; however there is little accompanying annotation to confirm this.; PDB: 2K5T_A.
Probab=96.23 E-value=0.033 Score=55.06 Aligned_cols=80 Identities=19% Similarity=0.280 Sum_probs=56.5
Q ss_pred eEEEEEeeCCeEEEEEEEEEeCCeeEEEeeeEeeccccCCChhHHHHHHHHHHhhhcCccEEEecCh------hhhHHHH
Q 002312 805 MYCAILTVNSSVVSAGILRVFGQEVAELPLVATSKINHGKGYFQLLFACIEKLLSFLRVKSIVLPAA------EEAESIW 878 (937)
Q Consensus 805 fY~~VL~~~~~vVsaA~lri~g~~vAEiplVAT~~~yRgqG~gr~L~~~IE~~l~~lgV~~LvLpA~------~ea~~~w 878 (937)
+|++ .-|+.++||+.+.+.|. -|+|--+.|++.=||.|+|..|++.+.+.+. +|....+.+. ..+..-+
T Consensus 40 l~aA--rFNdRlLgAv~v~~~~~-~~~L~~l~VRevTRrRGVG~yLlee~~rq~p--~i~~w~l~~~~~~~~~~~~~~~F 114 (128)
T PF12568_consen 40 LFAA--RFNDRLLGAVKVTISGQ-QAELSDLCVREVTRRRGVGLYLLEEVLRQLP--DIKHWWLADEGVEPQDRAVMAAF 114 (128)
T ss_dssp EEEE--EETTEEEEEEEEEEETT-EEEEEEEEE-TT-SSSSHHHHHHHHHHHHS---S--EEEE--TT-S--THHHHHHH
T ss_pred EEEE--EechheeeeEEEEEcCc-ceEEeeEEEeeccccccHHHHHHHHHHHHCC--CCcEEEEecCCCcccchHHHHHH
Confidence 6665 78999999999999875 7999999999999999999999999999994 4555554433 1333344
Q ss_pred HhccCcEEcCH
Q 002312 879 TDKFGFKKIDP 889 (937)
Q Consensus 879 ~~kfGF~~i~~ 889 (937)
...+||...++
T Consensus 115 m~a~GF~~~~~ 125 (128)
T PF12568_consen 115 MQACGFSAQSD 125 (128)
T ss_dssp HHHHT-EE-SS
T ss_pred HHHcCccccCC
Confidence 44499987653
No 93
>COG3053 CitC Citrate lyase synthetase [Energy production and conversion]
Probab=96.20 E-value=0.017 Score=63.71 Aligned_cols=79 Identities=20% Similarity=0.298 Sum_probs=69.9
Q ss_pred eEEEEEeeCCeEEEEEEEEEeCCeeEEEeeeEeeccccCCChhHHHHHHHHHHhhhcCccEEEecChhhhHHHHHhccCc
Q 002312 805 MYCAILTVNSSVVSAGILRVFGQEVAELPLVATSKINHGKGYFQLLFACIEKLLSFLRVKSIVLPAAEEAESIWTDKFGF 884 (937)
Q Consensus 805 fY~~VL~~~~~vVsaA~lri~g~~vAEiplVAT~~~yRgqG~gr~L~~~IE~~l~~lgV~~LvLpA~~ea~~~w~~kfGF 884 (937)
.++++.-.++++|+|+++ +|. -|.-|||++.+||-|+.-.|+..+-.++-++|...||+-+-++-..++.. +||
T Consensus 37 ~~v~~~~~~~~iiacGsi--aGn---vikcvAvs~s~qGeGl~lkl~TeLin~ay~~g~~hLFiyTKp~~~~lFk~-~GF 110 (352)
T COG3053 37 YFVAIYRDNEEIIACGSI--AGN---VIKCVAVSESLQGEGLALKLVTELINLAYERGRTHLFIYTKPEYAALFKQ-CGF 110 (352)
T ss_pred EEEEEEcCCCcEEEeccc--ccc---eeEEEEechhcccccHHHHHHHHHHHHHHHcCCceEEEEechhHHHHHHh-CCc
Confidence 445554456999999994 564 38999999999999999999999999999999999999999999999999 999
Q ss_pred EEcCH
Q 002312 885 KKIDP 889 (937)
Q Consensus 885 ~~i~~ 889 (937)
..+..
T Consensus 111 ~~i~~ 115 (352)
T COG3053 111 SEIAS 115 (352)
T ss_pred eEeec
Confidence 99877
No 94
>COG0454 WecD Histone acetyltransferase HPA2 and related acetyltransferases [Transcription / General function prediction only]
Probab=96.19 E-value=0.0062 Score=51.11 Aligned_cols=44 Identities=16% Similarity=0.120 Sum_probs=39.5
Q ss_pred eEeeccccCCChhHHHHHHHHHHhhhcCccEEEecChhhhHHHHHhccCc
Q 002312 835 VATSKINHGKGYFQLLFACIEKLLSFLRVKSIVLPAAEEAESIWTDKFGF 884 (937)
Q Consensus 835 VAT~~~yRgqG~gr~L~~~IE~~l~~lgV~~LvLpA~~ea~~~w~~kfGF 884 (937)
++|+++|||+|+|+.|+..+++.+...|+. ....+..+|.. +||
T Consensus 87 l~v~~~~rg~Gig~~Ll~~~~~~~~~~g~~-----~~~~~~~~~~~-~~~ 130 (156)
T COG0454 87 LYVLPEYRGKGIGSALLEAALEWARKRGIS-----LNRLALEVYEK-NGF 130 (156)
T ss_pred EEecchhhccchHHHHHHHHHHHHHHcCce-----ehHHHHHHHHh-cCC
Confidence 999999999999999999999999998887 55566778888 888
No 95
>KOG0955 consensus PHD finger protein BR140/LIN-49 [General function prediction only]
Probab=96.18 E-value=0.003 Score=79.70 Aligned_cols=57 Identities=25% Similarity=0.661 Sum_probs=44.3
Q ss_pred ccCCccccccCCCCCCCCCCCCceeeCCCCCCcCCCCCCCcCcCCcccCCCCCcceecCCccchhHHH
Q 002312 644 AELSGCLLCRGCDFSKSGFGPRTILLCDQCEREFHVGCLKKHKMADLRELPKGKWFCCMDCSRINSVL 711 (937)
Q Consensus 644 ~e~~~C~vC~~~df~~sgf~~~tLL~CDqCdr~yHv~CL~p~~~~~L~evP~g~WfCc~~C~~I~~~L 711 (937)
++...|.+|.+++- .+-+.+++||.|+.++|.+|.. .+-+|+|.|+| ..|.......
T Consensus 217 ~~D~~C~iC~~~~~----~n~n~ivfCD~Cnl~VHq~Cyg------i~~ipeg~WlC-r~Cl~s~~~~ 273 (1051)
T KOG0955|consen 217 EEDAVCCICLDGEC----QNSNVIVFCDGCNLAVHQECYG------IPFIPEGQWLC-RRCLQSPQRP 273 (1051)
T ss_pred CCCccceeeccccc----CCCceEEEcCCCcchhhhhccC------CCCCCCCcEee-hhhccCcCcc
Confidence 34567999998863 3457899999999999999995 44578999999 8886444433
No 96
>COG1670 RimL Acetyltransferases, including N-acetylases of ribosomal proteins [Translation, ribosomal structure and biogenesis]
Probab=96.07 E-value=0.038 Score=54.11 Aligned_cols=87 Identities=17% Similarity=0.215 Sum_probs=66.7
Q ss_pred cceEEEEEeeC--CeEEEEEEEEEeC----CeeEEEeeeEeeccccCCChhHHHHHHHHHHhhh-cCccEEEecChhh--
Q 002312 803 GGMYCAILTVN--SSVVSAGILRVFG----QEVAELPLVATSKINHGKGYFQLLFACIEKLLSF-LRVKSIVLPAAEE-- 873 (937)
Q Consensus 803 ~GfY~~VL~~~--~~vVsaA~lri~g----~~vAEiplVAT~~~yRgqG~gr~L~~~IE~~l~~-lgV~~LvLpA~~e-- 873 (937)
.+.|.++...+ +++||.+.+.... .+.+|+-..- .+.|+|||++...+.++.+.+-. +|+.+|++-....
T Consensus 64 ~~~~~~~~~~~~~~~~iG~~~~~~~~~~~~~~~~~ig~~l-~~~~~g~G~~tea~~~~l~~~f~~~~l~ri~~~~~~~N~ 142 (187)
T COG1670 64 GGAFAIELKATGDGELIGVIGLSDIDRAANGDLAEIGYWL-DPEYWGKGYATEALRALLDYAFEELGLHRIEATVDPENE 142 (187)
T ss_pred CceEEEEEEeCCCCeEEEEEEEEEeccccccceEEEEEEE-ChHHhcCchHHHHHHHHHHHhhhhcCceEEEEEecCCCH
Confidence 34566665554 4999999998655 5677777666 99999999999999999998666 9999998876554
Q ss_pred -hHHHHHhccCcEEcCHHH
Q 002312 874 -AESIWTDKFGFKKIDPEL 891 (937)
Q Consensus 874 -a~~~w~~kfGF~~i~~~e 891 (937)
+...+.+ +||+..+...
T Consensus 143 ~S~rv~ek-~Gf~~eg~~~ 160 (187)
T COG1670 143 ASIRVYEK-LGFRLEGELR 160 (187)
T ss_pred HHHHHHHH-cCChhhhhhh
Confidence 4556666 9999777644
No 97
>KOG4144 consensus Arylalkylamine N-acetyltransferase [General function prediction only]
Probab=96.03 E-value=0.0053 Score=62.17 Aligned_cols=61 Identities=20% Similarity=0.258 Sum_probs=51.7
Q ss_pred eeEEEeeeEeeccccCCChhHHHHHH-HHHHhhhcCccEEEecChhhhHHHHHhccCcEEcCH
Q 002312 828 EVAELPLVATSKINHGKGYFQLLFAC-IEKLLSFLRVKSIVLPAAEEAESIWTDKFGFKKIDP 889 (937)
Q Consensus 828 ~vAEiplVAT~~~yRgqG~gr~L~~~-IE~~l~~lgV~~LvLpA~~ea~~~w~~kfGF~~i~~ 889 (937)
.-+.|-.+|+.++||.||++..|+.. |..+-..-=+++.+|=+-+.+++||++ |||+.+++
T Consensus 100 ~ni~iHsl~Ihpa~rk~g~a~~Ll~~ylq~l~~q~i~~r~~Li~h~pLvPFYEr-~gFk~vgp 161 (190)
T KOG4144|consen 100 HNIHIHSLAIHPAFRKQGRAPILLWRYLQHLGSQPIVRRAALICHDPLVPFYER-FGFKAVGP 161 (190)
T ss_pred cceeEEEEEecHHHHhcCcchhHHHHHHHHhhcCccccceeeeecCCccchhHh-cCceeecc
Confidence 34778889999999999999999877 444444555678899999999999999 99999998
No 98
>cd04718 BAH_plant_2 BAH, or Bromo Adjacent Homology domain, plant-specific sub-family with unknown function. BAH domains are found in a variety of proteins playing roles in transcriptional silencing and the remodeling of chromatin. It is assumed that in most or all of these instances the BAH domain mediates protein-protein interactions.
Probab=95.98 E-value=0.0033 Score=63.29 Aligned_cols=25 Identities=40% Similarity=1.132 Sum_probs=22.8
Q ss_pred ccccccCC--CCCCCCCCccccccccc
Q 002312 579 AFHKECAS--LSSIPQGDWYCKYCQNM 603 (937)
Q Consensus 579 afH~~CL~--L~~vPeG~W~Cp~C~~~ 603 (937)
+||..||+ |..+|+|+|+||.|...
T Consensus 1 g~H~~CL~Ppl~~~P~g~W~Cp~C~~~ 27 (148)
T cd04718 1 GFHLCCLRPPLKEVPEGDWICPFCEVE 27 (148)
T ss_pred CcccccCCCCCCCCCCCCcCCCCCcCC
Confidence 59999996 88999999999999864
No 99
>KOG2488 consensus Acetyltransferase (GNAT) domain-containing protein [General function prediction only]
Probab=95.93 E-value=0.024 Score=59.32 Aligned_cols=84 Identities=21% Similarity=0.279 Sum_probs=63.6
Q ss_pred eEEEEEeeCCeEEEEEEEEE---eCCeeEEEeeeEeeccccCCChhHHHHHHHHHHhhhcCccEEEec---ChhhhHHHH
Q 002312 805 MYCAILTVNSSVVSAGILRV---FGQEVAELPLVATSKINHGKGYFQLLFACIEKLLSFLRVKSIVLP---AAEEAESIW 878 (937)
Q Consensus 805 fY~~VL~~~~~vVsaA~lri---~g~~vAEiplVAT~~~yRgqG~gr~L~~~IE~~l~~lgV~~LvLp---A~~ea~~~w 878 (937)
-|.+.....+++||-+.+|. +|..++=.-=|-+.+.|||+|+|+.|++.+|.++...+.+.++|- .-.-|.+||
T Consensus 93 ~Yi~a~~~~~~~vgf~~Frf~vd~g~~vlYcyEvqv~~~yR~kGiGk~LL~~l~~~a~~~~~~kVmLTVf~~N~~al~Fy 172 (202)
T KOG2488|consen 93 RYICAWNNKSKLVGFTMFRFTVDTGDPVLYCYEVQVASAYRGKGIGKFLLDTLEKLADSRHMRKVMLTVFSENIRALGFY 172 (202)
T ss_pred eEEEEEcCCCceeeEEEEEEEcccCCeEEEEEEEeehhhhhccChHHHHHHHHHHHHHHHHhhhheeeeecccchhHHHH
Confidence 34444444458999999987 333454444455677899999999999999999999998876554 455689999
Q ss_pred HhccCcEEcCH
Q 002312 879 TDKFGFKKIDP 889 (937)
Q Consensus 879 ~~kfGF~~i~~ 889 (937)
.+ +||.+...
T Consensus 173 ~~-~gf~~~~~ 182 (202)
T KOG2488|consen 173 HR-LGFVVDEE 182 (202)
T ss_pred HH-cCcccCCC
Confidence 99 99987765
No 100
>KOG0956 consensus PHD finger protein AF10 [General function prediction only]
Probab=95.92 E-value=0.0034 Score=74.87 Aligned_cols=51 Identities=29% Similarity=0.955 Sum_probs=42.0
Q ss_pred cCCccccccCCCCCCCCCCCCceeeCC--CCCCcCCCCCCCcCcCCcccCCCCCcceecCCccc
Q 002312 645 ELSGCLLCRGCDFSKSGFGPRTILLCD--QCEREFHVGCLKKHKMADLRELPKGKWFCCMDCSR 706 (937)
Q Consensus 645 e~~~C~vC~~~df~~sgf~~~tLL~CD--qCdr~yHv~CL~p~~~~~L~evP~g~WfCc~~C~~ 706 (937)
.+++|.+|.+- -|..++.|+.|| .|.-+.|..|. .+.+||.|.||| ..|..
T Consensus 4 MVGGCCVCSDE----rGWaeNPLVYCDG~nCsVAVHQaCY------GIvqVPtGpWfC-rKCes 56 (900)
T KOG0956|consen 4 MVGGCCVCSDE----RGWAENPLVYCDGHNCSVAVHQACY------GIVQVPTGPWFC-RKCES 56 (900)
T ss_pred cccceeeecCc----CCCccCceeeecCCCceeeeehhcc------eeEecCCCchhh-hhhhh
Confidence 45789999864 244578899999 79999999999 467899999999 88953
No 101
>COG2388 Predicted acetyltransferase [General function prediction only]
Probab=95.90 E-value=0.019 Score=54.50 Aligned_cols=62 Identities=18% Similarity=0.117 Sum_probs=56.4
Q ss_pred cceEEEEEeeCCeEEEEEEEEEeCCeeEEEeeeEeeccccCCChhHHHHHHHHHHhhhcCccEE
Q 002312 803 GGMYCAILTVNSSVVSAGILRVFGQEVAELPLVATSKINHGKGYFQLLFACIEKLLSFLRVKSI 866 (937)
Q Consensus 803 ~GfY~~VL~~~~~vVsaA~lri~g~~vAEiplVAT~~~yRgqG~gr~L~~~IE~~l~~lgV~~L 866 (937)
+++|++ ..+|+.++.++..-.|.+..-|.---|.+++||||+++.|+....+.++.-|.+-+
T Consensus 15 ~~~y~~--~~~G~~~~e~~y~~~~~~~i~i~HT~V~d~lrGqGia~~L~~~al~~ar~~g~kii 76 (99)
T COG2388 15 NGRYVL--TDEGEVIGEATYYDRGENLIIIDHTYVPDELRGQGIAQKLVEKALEEAREAGLKII 76 (99)
T ss_pred ceEEEE--ecCCcEEEEEEEecCCCCEEEEecCcCCHHHcCCcHHHHHHHHHHHHHHHcCCeEc
Confidence 567765 88999999999988899999999999999999999999999999999999998644
No 102
>KOG1245 consensus Chromatin remodeling complex WSTF-ISWI, large subunit (contains heterochromatin localization, PHD and BROMO domains) [Chromatin structure and dynamics]
Probab=95.86 E-value=0.0021 Score=83.63 Aligned_cols=60 Identities=32% Similarity=0.754 Sum_probs=49.1
Q ss_pred ccCCccccccCCCCCCCCCCCCceeeCCCCCCcCCCCCCCcCcCCcccCCCCCcceecCCccchhHHHHHh
Q 002312 644 AELSGCLLCRGCDFSKSGFGPRTILLCDQCEREFHVGCLKKHKMADLRELPKGKWFCCMDCSRINSVLQNL 714 (937)
Q Consensus 644 ~e~~~C~vC~~~df~~sgf~~~tLL~CDqCdr~yHv~CL~p~~~~~L~evP~g~WfCc~~C~~I~~~LqkL 714 (937)
.....|.+|...+ ....|+.||.|..+||..|++| .+..+|.++||| +.|..-+...+..
T Consensus 1106 ~~~~~c~~cr~k~------~~~~m~lc~~c~~~~h~~C~rp----~~~~~~~~dW~C-~~c~~e~~~rr~~ 1165 (1404)
T KOG1245|consen 1106 AVNALCKVCRRKK------QDEKMLLCDECLSGFHLFCLRP----ALSSVPPGDWMC-PSCRKEHRARRQK 1165 (1404)
T ss_pred cchhhhhhhhhcc------cchhhhhhHhhhhhHHHHhhhh----hhccCCcCCccC-Cccchhhhhhhhh
Confidence 3446799998653 5678999999999999999998 788999999999 8998777644433
No 103
>KOG1245 consensus Chromatin remodeling complex WSTF-ISWI, large subunit (contains heterochromatin localization, PHD and BROMO domains) [Chromatin structure and dynamics]
Probab=94.72 E-value=0.0075 Score=78.74 Aligned_cols=51 Identities=35% Similarity=0.917 Sum_probs=43.5
Q ss_pred CCcccccccCccCCcCcccccCCCCceecccCCCcccccccCC--CCCCCCCCccccccccc
Q 002312 544 GLGIICHCCNSEVSPSQFEAHADGGNLLPCDGCPRAFHKECAS--LSSIPQGDWYCKYCQNM 603 (937)
Q Consensus 544 ~~~i~C~~C~~eiSpS~FE~HAdgG~Ll~CDgCp~afH~~CL~--L~~vPeG~W~Cp~C~~~ 603 (937)
.....|.+|...- +...|+.|+.|...||..|+. +..+|.|+|+||.|+..
T Consensus 1106 ~~~~~c~~cr~k~---------~~~~m~lc~~c~~~~h~~C~rp~~~~~~~~dW~C~~c~~e 1158 (1404)
T KOG1245|consen 1106 AVNALCKVCRRKK---------QDEKMLLCDECLSGFHLFCLRPALSSVPPGDWMCPSCRKE 1158 (1404)
T ss_pred cchhhhhhhhhcc---------cchhhhhhHhhhhhHHHHhhhhhhccCCcCCccCCccchh
Confidence 4568899999642 345899999999999999996 78999999999999865
No 104
>KOG3138 consensus Predicted N-acetyltransferase [General function prediction only]
Probab=94.59 E-value=0.031 Score=58.57 Aligned_cols=62 Identities=18% Similarity=0.173 Sum_probs=51.7
Q ss_pred eEEEeeeEeeccccCCChhHHHHHHHHHHhhhcC-ccEEEecC---hhhhHHHHHhccCcEEcCHHH
Q 002312 829 VAELPLVATSKINHGKGYFQLLFACIEKLLSFLR-VKSIVLPA---AEEAESIWTDKFGFKKIDPEL 891 (937)
Q Consensus 829 vAEiplVAT~~~yRgqG~gr~L~~~IE~~l~~lg-V~~LvLpA---~~ea~~~w~~kfGF~~i~~~e 891 (937)
+.-|-.++|.+.||.+|+|+.|++.+.+.+...+ .+++.|.+ -..|..||++ +||+.+....
T Consensus 89 ~~yi~~Lgvl~~yR~~gIGs~Ll~~~~~~~~~~~~~~~v~lHv~~~n~~ai~~Y~~-~gF~~~~~~~ 154 (187)
T KOG3138|consen 89 VIYILSLGVLPRYRNKGIGSKLLEFVKKYCSEAHQCRRVYLHVQAVNESAIEFYEK-RGFEIVERLK 154 (187)
T ss_pred eeEEEeecccHHHHhcchHHHHHHHHHHHHhcccccceEEEEEEeCCCcHHHHHHh-cCceEeeccc
Confidence 5778999999999999999999999999999999 66666654 3457778887 9999887643
No 105
>KOG0954 consensus PHD finger protein [General function prediction only]
Probab=94.34 E-value=0.018 Score=69.60 Aligned_cols=51 Identities=31% Similarity=0.802 Sum_probs=42.1
Q ss_pred cCCccccccCCCCCCCCCCCCceeeCCCCCCcCCCCCCCcCcCCcccCCCCCcceecCCccc
Q 002312 645 ELSGCLLCRGCDFSKSGFGPRTILLCDQCEREFHVGCLKKHKMADLRELPKGKWFCCMDCSR 706 (937)
Q Consensus 645 e~~~C~vC~~~df~~sgf~~~tLL~CDqCdr~yHv~CL~p~~~~~L~evP~g~WfCc~~C~~ 706 (937)
+...|.+|...| +.....|++||.|.-..|..|. .+.++|.+.|.| ..|..
T Consensus 270 edviCDvCrspD----~e~~neMVfCd~Cn~cVHqaCy------GIle~p~gpWlC-r~Cal 320 (893)
T KOG0954|consen 270 EDVICDVCRSPD----SEEANEMVFCDKCNICVHQACY------GILEVPEGPWLC-RTCAL 320 (893)
T ss_pred ccceeceecCCC----ccccceeEEeccchhHHHHhhh------ceeecCCCCeee-hhccc
Confidence 445699999876 2356789999999999999999 567889999999 77753
No 106
>PF13480 Acetyltransf_6: Acetyltransferase (GNAT) domain
Probab=94.18 E-value=0.34 Score=45.79 Aligned_cols=66 Identities=8% Similarity=-0.162 Sum_probs=57.9
Q ss_pred eEEEEEeeCCeEEEEEEEEEeCCeeEEEeeeEeeccccCCChhHHHHHHHHHHhhhcCccEEEecCh
Q 002312 805 MYCAILTVNSSVVSAGILRVFGQEVAELPLVATSKINHGKGYFQLLFACIEKLLSFLRVKSIVLPAA 871 (937)
Q Consensus 805 fY~~VL~~~~~vVsaA~lri~g~~vAEiplVAT~~~yRgqG~gr~L~~~IE~~l~~lgV~~LvLpA~ 871 (937)
...++++.+|++||++.....+ +.+..-..+++++|++.+.|..|+..+.+.+.+.|++.+-+...
T Consensus 71 ~~l~~~~~~g~~va~~~~~~~~-~~~~~~~~g~~~~~~~~~~~~~l~~~~i~~a~~~g~~~~d~g~g 136 (142)
T PF13480_consen 71 LRLFVLYDGGEPVAFALGFRHG-GTLYYWYGGYDPEYRKYSPGRLLLWEAIRWAIERGLRYFDFGGG 136 (142)
T ss_pred EEEEEEEECCEEEEEEEEEEEC-CEEEEEEEEECHhhHhCCHHHHHHHHHHHHHHHCCCCEEEECCC
Confidence 5666778899999999776655 68889999999999999999999999999999999999887654
No 107
>KOG4323 consensus Polycomb-like PHD Zn-finger protein [General function prediction only]
Probab=93.93 E-value=0.028 Score=65.62 Aligned_cols=50 Identities=28% Similarity=0.816 Sum_probs=39.2
Q ss_pred ccccccCccCCcCcccccCCCCceecccCCCcccccccCC------CCCCCCCCccccccccc
Q 002312 547 IICHCCNSEVSPSQFEAHADGGNLLPCDGCPRAFHKECAS------LSSIPQGDWYCKYCQNM 603 (937)
Q Consensus 547 i~C~~C~~eiSpS~FE~HAdgG~Ll~CDgCp~afH~~CL~------L~~vPeG~W~Cp~C~~~ 603 (937)
..|.+|....++ ....||.|++|..-||+.|.. +-.-+.+.|+|-.|...
T Consensus 169 ~qc~vC~~g~~~-------~~NrmlqC~~C~~~fHq~Chqp~i~~~l~~D~~~~w~C~~C~~~ 224 (464)
T KOG4323|consen 169 LQCSVCYCGGPG-------AGNRMLQCDKCRQWYHQACHQPLIKDELAGDPFYEWFCDVCNRG 224 (464)
T ss_pred ceeeeeecCCcC-------ccceeeeecccccHHHHHhccCCCCHhhccCccceEeehhhccc
Confidence 338888866555 456999999999999999995 22336788999999864
No 108
>COG5141 PHD zinc finger-containing protein [General function prediction only]
Probab=93.76 E-value=0.025 Score=65.70 Aligned_cols=47 Identities=32% Similarity=0.801 Sum_probs=36.8
Q ss_pred CccccccCCCCCCCCCCCCceeeCCCCCCcCCCCCCCcCcCCcccCCCCCcceecCCc
Q 002312 647 SGCLLCRGCDFSKSGFGPRTILLCDQCEREFHVGCLKKHKMADLRELPKGKWFCCMDC 704 (937)
Q Consensus 647 ~~C~vC~~~df~~sgf~~~tLL~CDqCdr~yHv~CL~p~~~~~L~evP~g~WfCc~~C 704 (937)
+.|.+|...+. .+.++++.||.|+-..|..|.. +.-+|+|.|+| ..|
T Consensus 194 ~~C~~c~~t~~----eN~naiVfCdgC~i~VHq~CYG------I~f~peG~WlC-rkC 240 (669)
T COG5141 194 DICTKCTSTHN----ENSNAIVFCDGCEICVHQSCYG------IQFLPEGFWLC-RKC 240 (669)
T ss_pred hhhHhcccccc----CCcceEEEecCcchhhhhhccc------ceecCcchhhh-hhh
Confidence 45888876542 2457899999999999999994 44578999998 555
No 109
>COG4552 Eis Predicted acetyltransferase involved in intracellular survival and related acetyltransferases [General function prediction only]
Probab=93.73 E-value=0.081 Score=59.99 Aligned_cols=86 Identities=17% Similarity=0.178 Sum_probs=66.5
Q ss_pred CceecceEEEEEeeCCeEEEEEEEE----EeCC---eeEEEeeeEeeccccCCChhHHHHHHHHHHhhhcCccEEEecCh
Q 002312 799 GQEFGGMYCAILTVNSSVVSAGILR----VFGQ---EVAELPLVATSKINHGKGYFQLLFACIEKLLSFLRVKSIVLPAA 871 (937)
Q Consensus 799 ~~~f~GfY~~VL~~~~~vVsaA~lr----i~g~---~vAEiplVAT~~~yRgqG~gr~L~~~IE~~l~~lgV~~LvLpA~ 871 (937)
.+++.++|.+ +.+.++++--.+- -+|. ..|-|-.||+.|+|||+|+-|+|+....+..++.|+.-.+|.+.
T Consensus 35 il~~~n~~vi--~~nqkl~s~L~i~~f~~~f~~q~l~t~GIa~Vas~P~~R~~G~~~~Ll~~sLre~~~kG~p~s~L~P~ 112 (389)
T COG4552 35 ILAEPNSYVI--YMNQKLASRLHIPPFIFWFGNQVLPTAGIAGVASAPTYRRRGALRALLAHSLREIARKGYPVSALHPF 112 (389)
T ss_pred hccCCcceEE--eehhhhhhcccccchheeeCCeeeeccceEEEEechhhccCcHHHHHHHHHHHHHHHcCCeeEEeccC
Confidence 4566777765 7777776543322 1133 35678889999999999999999999999999999998888765
Q ss_pred hhhHHHHHhccCcEEcCH
Q 002312 872 EEAESIWTDKFGFKKIDP 889 (937)
Q Consensus 872 ~ea~~~w~~kfGF~~i~~ 889 (937)
..+||.+ |||..-+.
T Consensus 113 --s~~iYrK-fGye~asn 127 (389)
T COG4552 113 --SGGIYRK-FGYEYASN 127 (389)
T ss_pred --chhhHhh-ccccccce
Confidence 4679998 99987665
No 110
>TIGR03694 exosort_acyl putative PEP-CTERM/exosortase system-associated acyltransferase. Members of this protein family are restricted to bacterial species with the PEP-CTERM/exosortase system predicted to act in exopolysaccharide-associated protein targeting. PSI-BLAST and CDD reveal relationships to the acyltransferase family that includes N-acyl-L-homoserine lactone synthetase. Several members of this family may be found in a single genome. These proteins likely contribute to chemical modifications in exopolysaccharide and biofilm structural material production.
Probab=93.42 E-value=0.41 Score=51.90 Aligned_cols=120 Identities=15% Similarity=0.083 Sum_probs=80.1
Q ss_pred HHHHHHHHhhhhcCCCcccCCCCCCccccccccccCCCceecceEEEEEe-eCCeEEEEEEEEEe---------------
Q 002312 762 LLLSQAVAIFHDCFDPIVDSISGRDLIPSMVYGRNLRGQEFGGMYCAILT-VNSSVVSAGILRVF--------------- 825 (937)
Q Consensus 762 ~~La~AL~If~EcF~Pivd~~TgrDLIp~MVy~r~~~~~~f~GfY~~VL~-~~~~vVsaA~lri~--------------- 825 (937)
..+..|..+=++-|. +. -|.++..+---+.++...|-..-|.++.. .+|++||+++|...
T Consensus 17 ~~~~~~~~lR~~VFv---~e-~gw~~~~~~~~~~E~D~~D~~~~h~l~~~~~~g~vvG~~RLl~t~~~~p~~~~p~e~~~ 92 (241)
T TIGR03694 17 ELLEEAFRLRYQVYC---EE-LGFEPPSDYPDGLETDEYDAHSVHSLLRHRRTGTFVGCVRLVLPNSSDPDQPFPFEKHC 92 (241)
T ss_pred HHHHHHHHHHHHHHH---Hh-cCCCCCCCCCCCCcCCCCCCCCcEEEEEECCCCCEEEEEEEeccccccccccccHHHHh
Confidence 345666666666661 11 12221110002334444554455655544 35899999998642
Q ss_pred ---------------CCeeEEEeeeEeeccccCC--------C--------------------hhHHHHHHHHHHhhhcC
Q 002312 826 ---------------GQEVAELPLVATSKINHGK--------G--------------------YFQLLFACIEKLLSFLR 862 (937)
Q Consensus 826 ---------------g~~vAEiplVAT~~~yRgq--------G--------------------~gr~L~~~IE~~l~~lg 862 (937)
+..++|+-++|+.++||+. | +...|+.++-+.+...|
T Consensus 93 ~~~~~~~~~~~~~~~~~~i~E~SRf~V~~~~r~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~a~~~G 172 (241)
T TIGR03694 93 SHSLDGLFLDPRRLPRSRIAEVSRLAVSKDFRRRKGEKLKPSGVGVIETEAPFSESERRRFPHIPLGLYLGLIALSSANG 172 (241)
T ss_pred ccccchhhcCccccCCCceEEeehheECHhHhCCcccccccccccccccccccchhhcccCchHHHHHHHHHHHHHHHCC
Confidence 1369999999999999974 2 44679999999999999
Q ss_pred ccEEEecChhhhHHHHHhccCcEE
Q 002312 863 VKSIVLPAAEEAESIWTDKFGFKK 886 (937)
Q Consensus 863 V~~LvLpA~~ea~~~w~~kfGF~~ 886 (937)
+++++.-+.+.....+.+ +||..
T Consensus 173 i~~~~~v~~~~l~r~l~r-~G~~~ 195 (241)
T TIGR03694 173 ITHWYAIMEPRLARLLSR-FGIQF 195 (241)
T ss_pred CcEEEEEeCHHHHHHHHH-hCCce
Confidence 999998888877877765 88643
No 111
>KOG3235 consensus Subunit of the major N alpha-acetyltransferase [General function prediction only]
Probab=92.83 E-value=0.3 Score=50.14 Aligned_cols=81 Identities=14% Similarity=0.208 Sum_probs=62.8
Q ss_pred EEe-eCCeEEEEEEEEEeC-----CeeEEEeeeEeeccccCCChhHHHHHHHHH-HhhhcCccEEEecChh---hhHHHH
Q 002312 809 ILT-VNSSVVSAGILRVFG-----QEVAELPLVATSKINHGKGYFQLLFACIEK-LLSFLRVKSIVLPAAE---EAESIW 878 (937)
Q Consensus 809 VL~-~~~~vVsaA~lri~g-----~~vAEiplVAT~~~yRgqG~gr~L~~~IE~-~l~~lgV~~LvLpA~~---ea~~~w 878 (937)
|.+ .+|.|||-.....+. ..-.+|-.+||...||+.|+++.||....+ ++...+.+.+-|.-+. .|...|
T Consensus 45 VA~D~~gkiVGYvlAkmee~p~~~~~hGhItSlaV~rs~RrlGla~kLm~qa~rAm~E~~~A~yvsLHVR~SNraAl~LY 124 (193)
T KOG3235|consen 45 VAEDENGKIVGYVLAKMEEDPDDEPPHGHITSLAVKRSYRRLGLAQKLMNQASRAMVEVYEAKYVSLHVRKSNRAALHLY 124 (193)
T ss_pred EEEcCCCcEEEEeeeehhhcccCCCCCCeeEEeeehhhHHHhhHHHHHHHHHHHHHHHhhcceEEEEeeecccHHHHHhh
Confidence 445 578999977766554 225789999999999999999999986554 4555677777777554 588999
Q ss_pred HhccCcEEcCH
Q 002312 879 TDKFGFKKIDP 889 (937)
Q Consensus 879 ~~kfGF~~i~~ 889 (937)
++.+||.+.+-
T Consensus 125 ~~tl~F~v~ev 135 (193)
T KOG3235|consen 125 KNTLGFVVCEV 135 (193)
T ss_pred hhccceEEeec
Confidence 99999998765
No 112
>COG1243 ELP3 Histone acetyltransferase [Transcription / Chromatin structure and dynamics]
Probab=92.73 E-value=0.089 Score=61.41 Aligned_cols=51 Identities=16% Similarity=0.228 Sum_probs=45.4
Q ss_pred eccccCCChhHHHHHHHHHHhhhcCccEEEecChhhhHHHHHhccCcEEcCH
Q 002312 838 SKINHGKGYFQLLFACIEKLLSFLRVKSIVLPAAEEAESIWTDKFGFKKIDP 889 (937)
Q Consensus 838 ~~~yRgqG~gr~L~~~IE~~l~~lgV~~LvLpA~~ea~~~w~~kfGF~~i~~ 889 (937)
...+|+||||+.||+..|+.|++-|.+++.+-+-..+...|.+ |||...++
T Consensus 459 ~~~~QH~G~G~~L~~~AE~ia~ee~~~ki~viSgiG~ReYy~k-~GY~~~gp 509 (515)
T COG1243 459 EDEWQHRGYGRELLEEAERIAREEGAKKILVISGIGVREYYRK-LGYELDGP 509 (515)
T ss_pred cchhhcccHHHHHHHHHHHHHHhhccccEEEEecccHHHHHHH-hCccccCC
Confidence 5789999999999999999999999999888877788888886 99987654
No 113
>KOG3234 consensus Acetyltransferase, (GNAT) family [General function prediction only]
Probab=92.72 E-value=0.15 Score=52.19 Aligned_cols=58 Identities=10% Similarity=0.113 Sum_probs=47.0
Q ss_pred eEEEeeeEeeccccCCChhHHHHHHHHHHhhhcCccEEEec---ChhhhHHHHHhccCcEEc
Q 002312 829 VAELPLVATSKINHGKGYFQLLFACIEKLLSFLRVKSIVLP---AAEEAESIWTDKFGFKKI 887 (937)
Q Consensus 829 vAEiplVAT~~~yRgqG~gr~L~~~IE~~l~~lgV~~LvLp---A~~ea~~~w~~kfGF~~i 887 (937)
-+++--++|.|.||++|++..||+.+|+.....+.--+.|- .-.-|..+|++ |||.+.
T Consensus 69 h~HvTAltVap~~Rrl~la~~lm~~led~~d~~~a~fvDLfVr~sN~iAI~mYkk-LGY~~Y 129 (173)
T KOG3234|consen 69 HGHVTALTVAPDYRRLGLAAKLMDTLEDVSDVDNAYFVDLFVRVSNQIAIDMYKK-LGYSVY 129 (173)
T ss_pred eeEEEEEEechhHHHHHHHHHHHHHHHHHHHhhhhheeeeeeeccchhHHHHHHh-cCceEE
Confidence 46788899999999999999999999999887755444333 34458999999 999864
No 114
>PF06852 DUF1248: Protein of unknown function (DUF1248); InterPro: IPR009658 This entry represents a conserved region within a number of proteins of unknown function that seem to be specific to Caenorhabditis elegans. Note that some proteins in the entry contain more than one copy of this region.
Probab=92.25 E-value=0.76 Score=48.20 Aligned_cols=84 Identities=17% Similarity=0.203 Sum_probs=59.3
Q ss_pred eEEEEEeeCCeEEEEEEEEEeC-------CeeEEEeeeEeeccccCCChhHHHHHHHHHHhhhcCccEEEecChhhhHHH
Q 002312 805 MYCAILTVNSSVVSAGILRVFG-------QEVAELPLVATSKINHGKGYFQLLFACIEKLLSFLRVKSIVLPAAEEAESI 877 (937)
Q Consensus 805 fY~~VL~~~~~vVsaA~lri~g-------~~vAEiplVAT~~~yRgqG~gr~L~~~IE~~l~~lgV~~LvLpA~~ea~~~ 877 (937)
||.+++...+.+|++..+-.+. ..+--+.+.=+.|+|||+|+++.+...+-+.+... =...++.+...+..+
T Consensus 47 l~~~~~KgT~~via~~~~~~~~~l~~~~d~pl~~~G~~w~~p~yRg~~~~kl~~~~~~~~~~~~-~~N~~~~~~~~~~~~ 125 (181)
T PF06852_consen 47 LVLTCLKGTDRVIATVHLIRFDPLNPSPDKPLQFIGFFWIDPEYRGKGIMKLQDDICMDELDSV-DDNSVAQGNVKMSNF 125 (181)
T ss_pred EEEEEEcCCCcEEEEEEEEEeccCCCCCCCCeEEEeeeeeCCcccCcchHHHHHHHHHHHhccC-CCceeeecCHHHHHH
Confidence 3555544556788877764333 23777777779999999999974444444455553 345666788889999
Q ss_pred HHhccCcEEcCH
Q 002312 878 WTDKFGFKKIDP 889 (937)
Q Consensus 878 w~~kfGF~~i~~ 889 (937)
|.+-|||..++.
T Consensus 126 w~k~~G~~~~~h 137 (181)
T PF06852_consen 126 WHKMFGFDDYGH 137 (181)
T ss_pred HHHHhCCCCCcc
Confidence 999999988877
No 115
>smart00258 SAND SAND domain.
Probab=92.03 E-value=0.13 Score=46.32 Aligned_cols=50 Identities=24% Similarity=0.362 Sum_probs=40.7
Q ss_pred eCCeEEeeCcCCCCceeeCcchhhhcccc-ccCCcccceeccCCccHHHHHHH
Q 002312 260 RDGGILCSCSLCNGCRVIPPSKFEIHACK-QYRRASQYICFENGKSLLEVLRA 311 (937)
Q Consensus 260 ~~~GilC~C~~C~~~~v~s~s~FE~HAG~-~~~~p~~~I~lenG~sL~~v~~~ 311 (937)
..+|+.+-|..|++ +-+||++||.|||. ++++=-..|.. ||.+|+.+++.
T Consensus 19 f~~G~~~kCI~~~~-~~~TP~eFe~~~g~~~~K~WK~sIR~-~g~~Lr~L~~~ 69 (73)
T smart00258 19 FKCGISVKCIQYED-KWFTPKEFEIEGGKGKSKDWKRSIRC-GGSSLRTLMEN 69 (73)
T ss_pred hhcCcccCCccCCC-EEEChHHHHhhcCCcccCCcchheeE-CCccHHHHHHc
Confidence 45599999999986 89999999999995 46665666654 69999998874
No 116
>PF13831 PHD_2: PHD-finger; PDB: 2L43_A 2KU3_A.
Probab=90.90 E-value=0.026 Score=44.16 Aligned_cols=33 Identities=36% Similarity=1.110 Sum_probs=17.6
Q ss_pred CceeeCCCCCCcCCCCCCCcCcCCcccCCCCC-cceecCCc
Q 002312 665 RTILLCDQCEREFHVGCLKKHKMADLRELPKG-KWFCCMDC 704 (937)
Q Consensus 665 ~tLL~CDqCdr~yHv~CL~p~~~~~L~evP~g-~WfCc~~C 704 (937)
+.||.|+.|.-..|..|.. +..+|.+ .|+| .-|
T Consensus 2 n~ll~C~~C~v~VH~~CYG------v~~~~~~~~W~C-~~C 35 (36)
T PF13831_consen 2 NPLLFCDNCNVAVHQSCYG------VSEVPDGDDWLC-DRC 35 (36)
T ss_dssp CEEEE-SSS--EEEHHHHT-------SS--SS------HHH
T ss_pred CceEEeCCCCCcCChhhCC------cccCCCCCcEEC-CcC
Confidence 4699999999999999984 3444555 7999 544
No 117
>PF01342 SAND: SAND domain; InterPro: IPR000770 The SAND domain (named after Sp100, AIRE-1, NucP41/75, DEAF-1) is a conserved ~80 residue region found in a number of nuclear proteins, many of which function in chromatin-dependent transcriptional control. These include proteins linked to various human diseases, such as the Sp100 (Speckled protein 100 kDa), NUDR (Nuclear DEAF-1 related), GMEB (Glucocorticoid Modulatory Element Binding) proteins and AIRE-1 (Autoimmune regulator 1) proteins. Proteins containing the SAND domain have a modular structure; the SAND domain can be associated with a number of other modules, including the bromodomain, the PHD finger and the MYND finger. Because no SAND domain has been found in yeast, it is thought that the SAND domain could be restricted to animal phyla. Many SAND domain-containing proteins, including NUDR, DEAF-1 (Deformed epidermal autoregulatory factor-1) and GMEB, have been shown to bind DNA sequences specifically. The SAND domain has been proposed to mediate the DNA binding activity of these proteins [, ]. The resolution of the 3D structure of the SAND domain from Sp100b has revealed that it consists of a novel alpha/beta fold. The SAND domain adopts a compact fold consisting of a strongly twisted, five-stranded antiparallel beta-sheet with four alpha-helices packing against one side of the beta-sheet. The opposite side of the beta-sheet is solvent exposed. The beta-sheet and alpha-helical parts of the structure form two distinct regions. Multiple hydrophobic residues pack between these regions to form a structural core. A conserved KDWK sequence motif is found within the alpha-helical, positively charged surface patch. The DNA binding surface has been mapped to the alpha-helical region encompassing the KDWK motif [].; GO: 0003677 DNA binding, 0005634 nucleus; PDB: 1OQJ_B 1UFN_A 1H5P_A.
Probab=90.44 E-value=0.1 Score=47.86 Aligned_cols=55 Identities=27% Similarity=0.470 Sum_probs=39.3
Q ss_pred eeEEEe-----CCeEEeeCcCCCCceeeCcchhhhcccccc-CCcccceeccCCccHHHHHHH
Q 002312 255 LRGIIR-----DGGILCSCSLCNGCRVIPPSKFEIHACKQY-RRASQYICFENGKSLLEVLRA 311 (937)
Q Consensus 255 l~G~i~-----~~GilC~C~~C~~~~v~s~s~FE~HAG~~~-~~p~~~I~lenG~sL~~v~~~ 311 (937)
++|++. ..|+...|-.++ .+-+||.+||.|||..+ |+=-..|.. +|.+|..+|++
T Consensus 18 ~~G~L~~~k~~~~g~~~kCI~~~-g~~~TP~eFE~~~G~~~sK~WK~SIr~-~g~~L~~li~~ 78 (82)
T PF01342_consen 18 VKGTLYKKKFVKQGICGKCIQCE-GRWFTPSEFERHGGKGSSKDWKRSIRC-GGEPLGKLIEK 78 (82)
T ss_dssp EEEEEEHHHH-TTGTTSS-EEET-TEEE-HHHHHHHHTTCTCS-HHHHSEE-TTEEHHHHHHT
T ss_pred eEEEEEHHHhhcccccCceEeeC-CcEECHHHHHhhcCcccCCCCCccEEE-CCEEHHHHHhh
Confidence 355554 445666677777 57999999999999874 445667877 89999988864
No 118
>PF00765 Autoind_synth: Autoinducer synthetase; InterPro: IPR001690 Bacterial species have many methods of controlling gene expression and cell growth. Regulation of gene expression in response to changes in cell density is termed quorum sensing [, ]. Quorum-sensing bacteria produce, release and respond to hormone-like molecules (autoinducers) that accumulate in the external environment as the cell population grows. Once a threshold of these molecules is reached, a signal transduction cascade is triggered that ultimately leads to behavioural changes in the bacterium []. Autoinducers are thus clearly important mediators of molecular communication. Conjugal transfer of Agrobacterium octopine-type Ti plasmids is activated by octopine, a metabolite released from plant tumours []. Octopine causes conjugal donors to secrete a pheromone, Agrobacterium autoinducer (AAI), and exogenous AAI further stimulates conjugation. The putative AAI synthase and an AAI-responsive transcriptional regulator have been found to be encoded by the Ti plasmid traI and traR genes, respectively. TraR and TraI are similar to the LuxR and LuxI regulatory proteins of Vibrio fischeri, and AAI is similar in structure to the diffusable V. fischeri autoinducer, the inducing ligand of LuxR. TraR activates target genes in the presence of AAI and also activates traR and traI themselves, creating two positive-feedback loops. TraR-AAI-mediated activation in wild-type Agrobacterium strains is enhanced by culturing on solid media, suggesting a possible role in cell density sensing []. Production of light by the marine bacterium V. fischeri and by recombinant hosts containing cloned lux genes is controlled by the density of the culture []. Density-dependent regulation of lux gene expression has been shown to require a locus consisting of the luxR and luxI genes. In these and other Gram-negative bacteria, N-(3-oxohexanoyl)-L-homoserine lactone (OHHL) acts as the autoinducer by binding to transcriptional regulatory proteins and activating them []. OHHL and related molecules, such as N-butanoyl- (BHL), N-hexanoyl- (HHL) and N-oxododecanoyl- (PAI) homoserine lactones, are produced by a family of proteins that share a high level of sequence similarity. Proteins which currently members of this family include: luxI from V. fischeri. ahyI and asaI from Aeromonas species, which synthesize BHL and whose targets are ahyR and asaR respectively. carI from Erwinia carotovora. The target of OHHL is carR which activates genes involved in the biosynthesis of carbapenem antibiotics. eagI from Enterobacter agglomerans. The target of OHHL is not yet known. esaI from Erwinia stewartii. expI from Erwinia carotovora. lasI from Pseudomonas aeruginosa, which synthesizes PAI and whose target is lasR which activates the transcription of the elastase gene. rhlI (or vsmI) from P. aeruginosa, which synthesizes BHL and HHL and whose target is rhlR. swrI from Serratia liquefaciens, which synthesizes BHL. yenI from Yersinia enterocolitica. ; GO: 0007165 signal transduction; PDB: 3P2H_A 3P2F_A 1KZF_A 1K4J_A 1RO5_A.
Probab=89.45 E-value=2 Score=44.87 Aligned_cols=82 Identities=17% Similarity=0.110 Sum_probs=63.2
Q ss_pred cceEEEEEeeCCeEEEEEEEEEeC---------------------CeeEEEeeeEeeccccC------CChhHHHHHHHH
Q 002312 803 GGMYCAILTVNSSVVSAGILRVFG---------------------QEVAELPLVATSKINHG------KGYFQLLFACIE 855 (937)
Q Consensus 803 ~GfY~~VL~~~~~vVsaA~lri~g---------------------~~vAEiplVAT~~~yRg------qG~gr~L~~~IE 855 (937)
.-.|.+++. +|+++|+++|.... .+++|+=+++++++.++ .-+...|+.++-
T Consensus 44 ~~~ylv~~~-~g~v~g~~RLlptt~p~ML~~~F~~ll~~~~~p~~~~vwE~SRf~v~~~~~~~~~~~~~~~~~~L~~~~~ 122 (182)
T PF00765_consen 44 DAVYLVALD-DGRVVGCARLLPTTGPYMLSDVFPHLLPDGPAPRSPDVWELSRFCVDPDRRRSRAGSRSPVTMELLLGMV 122 (182)
T ss_dssp T-EEEEEEE-TTEEEEEEEEEETTS--HHHHCTGGGHTTS---SSTTEEEEEEEEE-HCCCHHCHSCC-THHHHHHHHHH
T ss_pred CCeEEEEEE-CCEEEEEeeeccCCCcchhhhHHHHHhCCCCCCCCCcceeeeEEEEcccccccccccccHHHHHHHHHHH
Confidence 347877765 59999999987533 57999999999988532 235789999999
Q ss_pred HHhhhcCccEEEecChhhhHHHHHhccCcEE
Q 002312 856 KLLSFLRVKSIVLPAAEEAESIWTDKFGFKK 886 (937)
Q Consensus 856 ~~l~~lgV~~LvLpA~~ea~~~w~~kfGF~~ 886 (937)
+.+.+.|++.++.-+..-.+.++.+ +||..
T Consensus 123 e~a~~~gi~~~v~V~~~~~~r~l~r-~G~~~ 152 (182)
T PF00765_consen 123 EFALSNGIRHIVGVVDPAMERILRR-AGWPV 152 (182)
T ss_dssp HHHHCTT-SEEEEEEEHHHHHHHHH-CT-EE
T ss_pred HHHHHCCCCEEEEEEChHHHHHHHH-cCCce
Confidence 9999999999998888777888877 99874
No 119
>PRK13834 putative autoinducer synthesis protein; Provisional
Probab=89.15 E-value=2.3 Score=45.26 Aligned_cols=118 Identities=18% Similarity=0.106 Sum_probs=78.0
Q ss_pred HHHHHHHHhhhhcCCCcccCCCCCCccccccccccCCCcee-cceEEEEEeeCCeEEEEEEEEEe---------------
Q 002312 762 LLLSQAVAIFHDCFDPIVDSISGRDLIPSMVYGRNLRGQEF-GGMYCAILTVNSSVVSAGILRVF--------------- 825 (937)
Q Consensus 762 ~~La~AL~If~EcF~Pivd~~TgrDLIp~MVy~r~~~~~~f-~GfY~~VL~~~~~vVsaA~lri~--------------- 825 (937)
..+.++...=++.|. +. =|=++ +. --|.+....|- .-.|.+....+|++||+++|--.
T Consensus 16 ~~l~~~~rLR~~VF~---~e-lgW~~-~~-~~g~E~D~yD~~~~~yll~~~~~g~vvG~~RLlptt~p~ml~~~fp~l~~ 89 (207)
T PRK13834 16 SLLKQMHRLRARVFG---GR-LGWDV-SI-TDGEERDQFDDLKPTYILAISDSGRVAGCARLLPAIGPTMLAQVFPQLLP 89 (207)
T ss_pred HHHHHHHHHHHHHhc---cc-cCCCC-CC-CCCcCccCCCCCCCEEEEEEeCCCeEEEEEecccCCCcchhhhhcHHhcC
Confidence 345666666666663 11 12222 11 12333434443 34677666678899999987221
Q ss_pred ------CCeeEEEeeeEeecccc---CCC----hhHHHHHHHHHHhhhcCccEEEecChhhhHHHHHhccCcEE
Q 002312 826 ------GQEVAELPLVATSKINH---GKG----YFQLLFACIEKLLSFLRVKSIVLPAAEEAESIWTDKFGFKK 886 (937)
Q Consensus 826 ------g~~vAEiplVAT~~~yR---gqG----~gr~L~~~IE~~l~~lgV~~LvLpA~~ea~~~w~~kfGF~~ 886 (937)
..+++|+-++|++++++ +.+ +...|+.++-+.+...|+++++.-........+.+ +||..
T Consensus 90 ~~~~~~~~~v~E~SRf~V~~~~~~~~~~~~~~~~~~~L~~~~~~~a~~~Gi~~~~~v~~~~~~r~l~r-~G~~~ 162 (207)
T PRK13834 90 AGRLNAHPAMIESSRFCVDTALAEGRGGGQLHEATLTMFAGIIEWSMANGYTEIVTATDLRFERILAR-AGWPM 162 (207)
T ss_pred CCCCCCCCCEEEEeeeEEcccccccccccccCHHHHHHHHHHHHHHHHCCCCEEEEEECHHHHHHHHH-cCCCe
Confidence 25799999999999863 222 55789999999999999999987777666677755 88753
No 120
>COG3981 Predicted acetyltransferase [General function prediction only]
Probab=88.77 E-value=0.77 Score=47.69 Aligned_cols=67 Identities=15% Similarity=0.162 Sum_probs=53.0
Q ss_pred eEEEEEeeCCeEEEEEEEEEeCCe-----eEEEeeeEeeccccCCChhHHHHHHHHHHhhhcCccEEEecChhh
Q 002312 805 MYCAILTVNSSVVSAGILRVFGQE-----VAELPLVATSKINHGKGYFQLLFACIEKLLSFLRVKSIVLPAAEE 873 (937)
Q Consensus 805 fY~~VL~~~~~vVsaA~lri~g~~-----vAEiplVAT~~~yRgqG~gr~L~~~IE~~l~~lgV~~LvLpA~~e 873 (937)
.|-+|-+ ++++||...||-.=.+ ..+| --+|+|+.||+||++.++.-..+.++.+|++.+.+-+..+
T Consensus 70 ~y~~v~~-d~~ivG~i~lRh~Ln~~ll~~gGHI-GY~VrPseR~KGYA~emLkl~L~~ar~lgi~~Vlvtcd~d 141 (174)
T COG3981 70 TYWAVDE-DGQIVGFINLRHQLNDFLLEEGGHI-GYSVRPSERRKGYAKEMLKLALEKARELGIKKVLVTCDKD 141 (174)
T ss_pred eEEEEec-CCcEEEEEEeeeecchHHHhcCCcc-cceeChhhhccCHHHHHHHHHHHHHHHcCCCeEEEEeCCC
Confidence 5555545 8999999999864322 1222 2469999999999999999999999999999998887754
No 121
>PF12861 zf-Apc11: Anaphase-promoting complex subunit 11 RING-H2 finger
Probab=88.15 E-value=0.24 Score=45.96 Aligned_cols=59 Identities=20% Similarity=0.402 Sum_probs=35.5
Q ss_pred CCcccccccCccCCcCc--ccccCCCCceecccCCCcccccccCC--CCCCCCCCcccccccccc
Q 002312 544 GLGIICHCCNSEVSPSQ--FEAHADGGNLLPCDGCPRAFHKECAS--LSSIPQGDWYCKYCQNMF 604 (937)
Q Consensus 544 ~~~i~C~~C~~eiSpS~--FE~HAdgG~Ll~CDgCp~afH~~CL~--L~~vPeG~W~Cp~C~~~~ 604 (937)
.+++.|++|...+...- -..-+|.-.++.+ .|.+.||..|+. +.. ....-.||.|+..+
T Consensus 19 ~~dd~CgICr~~fdg~Cp~Ck~Pgd~Cplv~g-~C~H~FH~hCI~kWl~~-~~~~~~CPmCR~~w 81 (85)
T PF12861_consen 19 ANDDVCGICRMPFDGCCPDCKFPGDDCPLVWG-KCSHNFHMHCILKWLST-QSSKGQCPMCRQPW 81 (85)
T ss_pred CCCCceeeEecccccCCCCccCCCCCCceeec-cCccHHHHHHHHHHHcc-ccCCCCCCCcCCee
Confidence 34789999997543111 0000122234444 499999999994 322 23456999999764
No 122
>PF12678 zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This domain constitutes a conserved region found in proteins that participate in diverse functions relevant to chromosome metabolism and cell cycle control [].The domain contains 8 cysteine/ histidine residues which are proposed to be the conserved residues involved in zinc binding.; PDB: 4A0C_D 4A0L_I 4A0K_B 2ECL_A 1LDK_C 3RTR_F 3DQV_Y 1U6G_B 1LDJ_B 2HYE_D ....
Probab=87.94 E-value=0.13 Score=45.90 Aligned_cols=54 Identities=20% Similarity=0.375 Sum_probs=32.6
Q ss_pred cccccccCccCCcCcccccCCCC-ceecccCCCcccccccCCCCCCCCCCccccccc
Q 002312 546 GIICHCCNSEVSPSQFEAHADGG-NLLPCDGCPRAFHKECASLSSIPQGDWYCKYCQ 601 (937)
Q Consensus 546 ~i~C~~C~~eiSpS~FE~HAdgG-~Ll~CDgCp~afH~~CL~L~~vPeG~W~Cp~C~ 601 (937)
.+.|.+|...+.....+.-+++. -.+.=..|++.||..|+. .|-.....||.|+
T Consensus 19 ~d~C~IC~~~l~~~~~~~~~~~~~~~i~~~~C~H~FH~~Ci~--~Wl~~~~~CP~CR 73 (73)
T PF12678_consen 19 DDNCAICREPLEDPCPECQAPQDECPIVWGPCGHIFHFHCIS--QWLKQNNTCPLCR 73 (73)
T ss_dssp CSBETTTTSBTTSTTCCHHHCTTTS-EEEETTSEEEEHHHHH--HHHTTSSB-TTSS
T ss_pred CCcccccChhhhChhhhhcCCccccceEecccCCCEEHHHHH--HHHhcCCcCCCCC
Confidence 44599999877433323222332 223334699999999994 3444455899985
No 123
>PF07897 DUF1675: Protein of unknown function (DUF1675); InterPro: IPR012463 The members of this family are sequences derived from hypothetical plant proteins of unknown function. One member of this family (Q9SFV5 from SWISSPROT) is annotated as a putative RNA-binding protein, but no evidence was found to support this.
Probab=85.95 E-value=1.1 Score=49.86 Aligned_cols=68 Identities=16% Similarity=0.246 Sum_probs=44.5
Q ss_pred chhhHhhhcCCCCCceEEEEcCCcccceeeeEEEeCC------eEEeeCcCCCCceeeCcchhhhccccc-cCCcccce
Q 002312 226 MTVTELFETGLLDGVSVVYMGGIKFQASGLRGIIRDG------GILCSCSLCNGCRVIPPSKFEIHACKQ-YRRASQYI 297 (937)
Q Consensus 226 ~~vk~Ll~tGlleG~~V~Y~~~~~~~~~~l~G~i~~~------GilC~C~~C~~~~v~s~s~FE~HAG~~-~~~p~~~I 297 (937)
.+...-..+.+++.+|-.+-....-++....|+++.- -|+|-|- -.-+||.+|=.|||.. .-||-.||
T Consensus 209 ~~~~~~~~~~~~~~mp~v~t~g~gpng~~i~g~ly~y~~~~~v~i~c~ch----g~~~~~~efv~h~~~~~~~~p~~hi 283 (284)
T PF07897_consen 209 TNSGGDGSRNMMEDMPCVSTTGDGPNGKRIEGFLYKYGKGEEVRIVCVCH----GSFLSPAEFVKHAGGGDVANPLRHI 283 (284)
T ss_pred ccccccccccccccCCceeeccCCCCCceeeEEEEEecCCCeEEEEEEec----CCCCCHHHHHHhcCCCCcCCchhcc
Confidence 3444444555667777555433212334556665544 3888886 4689999999999987 45899998
No 124
>cd04264 DUF619-NAGS DUF619 domain of various N-acetylglutamate Synthases of the fungal arginine-biosynthetic pathway and urea cycle found in humans and fish. DUF619-NAGS: This family includes the DUF619 domain of various N-acetylglutamate synthases (NAGS) of the urea cycle found in humans and fish, the DUF619 domain of the NAGS of the fungal arginine-biosynthetic pathway (FABP), as well as the DUF619 domain present in C-terminal of a NAG kinase-like domain in a limited number of predicted NAGSs found in bacteria and Dictyostelium. Ureogenic NAGS is a mitochondrial enzyme catalyzing the formation of NAG from acetylcoenzyme A and L-glutamate. NAGS is an essential allosteric activator of carbamylphosphate synthase I, the first and rate limiting enzyme of the urea cycle. Domain architecture of ureogenic and fungal NAGS consists of an N-terminal NAG kinase-like domain and a C-terminal DUF619 domain. The DUF619 domain function has yet to be characterized.
Probab=85.15 E-value=2 Score=40.98 Aligned_cols=48 Identities=21% Similarity=0.234 Sum_probs=41.4
Q ss_pred eeCCeEEEEEEEEEeC--CeeEEEeeeEeeccccCCChhHHHHHHHHHHh
Q 002312 811 TVNSSVVSAGILRVFG--QEVAELPLVATSKINHGKGYFQLLFACIEKLL 858 (937)
Q Consensus 811 ~~~~~vVsaA~lri~g--~~vAEiplVAT~~~yRgqG~gr~L~~~IE~~l 858 (937)
+.++...++|.+..-+ .+++-|-.+|+.+..||+|+++.|+.+|-+..
T Consensus 14 y~~e~y~~~aIvt~~~~~~~~~yLdKfaV~~~~~g~gvad~vf~~i~~d~ 63 (99)
T cd04264 14 YLSEGYNAAAIVTYEGVNNGVPYLDKFAVSSSAQGEGTSDALWRRLRRDF 63 (99)
T ss_pred EEeCCceEEEEEeccCCCCCceEEEEEEEchhhhhcChHHHHHHHHHhhC
Confidence 5567788888887654 58999999999999999999999999998774
No 125
>PF13639 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 1IYM_A 2EP4_A 2ECT_A 2JRJ_A 2ECN_A 2ECM_A 3NG2_A 2EA6_A ....
Probab=84.11 E-value=0.1 Score=41.72 Aligned_cols=44 Identities=23% Similarity=0.573 Sum_probs=27.7
Q ss_pred ccccccCccCCcCcccccCCCCceecccCCCcccccccCCCCCCCCCCccccccc
Q 002312 547 IICHCCNSEVSPSQFEAHADGGNLLPCDGCPRAFHKECASLSSIPQGDWYCKYCQ 601 (937)
Q Consensus 547 i~C~~C~~eiSpS~FE~HAdgG~Ll~CDgCp~afH~~CL~L~~vPeG~W~Cp~C~ 601 (937)
+.|.+|...+.. +..++... |.+.||..|+. .|-.....||.|+
T Consensus 1 d~C~IC~~~~~~--------~~~~~~l~-C~H~fh~~Ci~--~~~~~~~~CP~CR 44 (44)
T PF13639_consen 1 DECPICLEEFED--------GEKVVKLP-CGHVFHRSCIK--EWLKRNNSCPVCR 44 (44)
T ss_dssp -CETTTTCBHHT--------TSCEEEET-TSEEEEHHHHH--HHHHHSSB-TTTH
T ss_pred CCCcCCChhhcC--------CCeEEEcc-CCCeeCHHHHH--HHHHhCCcCCccC
Confidence 368999976542 34455444 99999999994 2222234898885
No 126
>PF07227 DUF1423: Protein of unknown function (DUF1423); InterPro: IPR004082 A total of 715 potential protein-coding genes have been identified in the nucleotide sequence of Arabidopsis thaliana chromosome 5, with an average gene density of 1 gene per 4001 bp []. Amongst the gene products is a well-conserved family of 130.7kDa proteins that share no sequence similarity with any other known proteins, other than in plants. The sequences are characterised by an N-terminal domain of variable length, a central cysteine-rich region and a relatively acidic C-terminal domain. The sequences may possess a PHD finger.
Probab=80.54 E-value=1.8 Score=50.87 Aligned_cols=55 Identities=22% Similarity=0.591 Sum_probs=36.2
Q ss_pred cccccCCCCCCCCCCCCceeeCCCCCCcCCCCCCCcCcCCc----ccC---CCCCcceecCCccch
Q 002312 649 CLLCRGCDFSKSGFGPRTILLCDQCEREFHVGCLKKHKMAD----LRE---LPKGKWFCCMDCSRI 707 (937)
Q Consensus 649 C~vC~~~df~~sgf~~~tLL~CDqCdr~yHv~CL~p~~~~~----L~e---vP~g~WfCc~~C~~I 707 (937)
|.+|.+.|+.. ++-.||.||.|..|.|++|.=.+.+.. ... ..+..++| ..|.+.
T Consensus 131 C~iC~kfD~~~---n~~~Wi~Cd~CgH~cH~dCALr~~~i~~G~s~~g~~g~~d~~f~C-~~C~~~ 192 (446)
T PF07227_consen 131 CCICSKFDDNK---NTCSWIGCDVCGHWCHLDCALRHELIGTGPSVKGSIGTLDMQFHC-RACGKT 192 (446)
T ss_pred ccccCCcccCC---CCeeEEeccCCCceehhhhhcccccccCCccCCCCCccCceEEEc-cCCCCh
Confidence 88898877553 456799999999999999964443211 111 11234555 899654
No 127
>PF14446 Prok-RING_1: Prokaryotic RING finger family 1
Probab=80.05 E-value=1.2 Score=38.18 Aligned_cols=34 Identities=26% Similarity=0.833 Sum_probs=29.6
Q ss_pred CcccccccCccCCcCcccccCCCCceecccCCCcccccccCC
Q 002312 545 LGIICHCCNSEVSPSQFEAHADGGNLLPCDGCPRAFHKECAS 586 (937)
Q Consensus 545 ~~i~C~~C~~eiSpS~FE~HAdgG~Ll~CDgCp~afH~~CL~ 586 (937)
.+..|.+|++.+. ++++++.|..|...||..|..
T Consensus 4 ~~~~C~~Cg~~~~--------~~dDiVvCp~CgapyHR~C~~ 37 (54)
T PF14446_consen 4 EGCKCPVCGKKFK--------DGDDIVVCPECGAPYHRDCWE 37 (54)
T ss_pred cCccChhhCCccc--------CCCCEEECCCCCCcccHHHHh
Confidence 4568999998876 588999999999999999983
No 128
>PF02474 NodA: Nodulation protein A (NodA); InterPro: IPR003484 Rhizobial nodulation (Nod) factors are signalling molecules secreted by root-nodulating rhizobia in response to flavanoids excreted by the host plant. They induce various symbiotic responses on the roots of the leguminous host plant at low concentrations, and are required for successful infection. Rhizobial Nod factors are lipo-chitooligosaccharides carrying various substituents which are important determinants of host specificity []. NodA is an N-acyl transferase which specifies the transfer of an acyl chain to the oligosaccharide backbone of Nod factor. Allelic variation of the nodA gene can contribute to the determination of host range [].; GO: 0016746 transferase activity, transferring acyl groups
Probab=79.83 E-value=2.8 Score=43.76 Aligned_cols=51 Identities=20% Similarity=0.050 Sum_probs=44.6
Q ss_pred eEEEeeeEeeccccCCChhHHHHHHHHHHhhhcCccEEEecChhhhHHHHHh
Q 002312 829 VAELPLVATSKINHGKGYFQLLFACIEKLLSFLRVKSIVLPAAEEAESIWTD 880 (937)
Q Consensus 829 vAEiplVAT~~~yRgqG~gr~L~~~IE~~l~~lgV~~LvLpA~~ea~~~w~~ 880 (937)
+||+-+.||+++.+|.|+++.| ..+--.|++|||.--|---+......+++
T Consensus 85 VaElGLygVRpDLEGlGi~hs~-r~m~PvLq~LgVPF~FGtVR~al~~Hv~R 135 (196)
T PF02474_consen 85 VAELGLYGVRPDLEGLGISHSM-RVMYPVLQELGVPFGFGTVRHALRNHVER 135 (196)
T ss_pred EEEEEEEEeeccccccccchhh-hhhhhHHHhcCCCeecccchHHHHHHHHH
Confidence 8999999999999999999976 68899999999998877777666777666
No 129
>TIGR03019 pepcterm_femAB FemAB-related protein, PEP-CTERM system-associated. Members of this protein family are found always as part of extended exopolysaccharide biosynthesis loci in bacteria. In nearly every case, these loci contain determinants for the processing of the PEP-CTERM proposed C-terminal protein sorting signal. This family shows remote, local sequence similarity to the FemAB protein family (see pfam02388), whose members
Probab=79.34 E-value=5.8 Score=44.47 Aligned_cols=81 Identities=9% Similarity=0.028 Sum_probs=63.0
Q ss_pred EEEEe-eCCeEEEEEEEEEeCCeeEEEeeeEeeccccCCChhHHHHHHHHHHhhhcCccEEEecChhh--hHHHHHhccC
Q 002312 807 CAILT-VNSSVVSAGILRVFGQEVAELPLVATSKINHGKGYFQLLFACIEKLLSFLRVKSIVLPAAEE--AESIWTDKFG 883 (937)
Q Consensus 807 ~~VL~-~~~~vVsaA~lri~g~~vAEiplVAT~~~yRgqG~gr~L~~~IE~~l~~lgV~~LvLpA~~e--a~~~w~~kfG 883 (937)
.++++ .+|++|+++.+..+++ .+.....++.++|++.+-+-.|+-.+.+.+.+.|++++-+..... -.-.|+++||
T Consensus 197 l~~a~~~~g~~va~~l~~~~~~-~~~~~~~g~~~~~~~~~~~~lL~w~~i~~a~~~G~~~fDfG~s~~~~G~~~FK~~~G 275 (330)
T TIGR03019 197 VLTVRLGDGVVASAVLSFYFRD-EVLPYYAGGLREARDVAANDLMYWELMRRACERGLRVFDFGRSKRGTGPFKFKKNWG 275 (330)
T ss_pred EEEEEeCCCCEEEEEEEEEeCC-EEEEEeccChHHHHhhChHHHHHHHHHHHHHHCCCcEEEcCCCCCCCccHHHHhcCC
Confidence 34456 6899999888766664 445558889999999999999999999999999999999876432 2334666789
Q ss_pred cEEcC
Q 002312 884 FKKID 888 (937)
Q Consensus 884 F~~i~ 888 (937)
|++..
T Consensus 276 ~~~~~ 280 (330)
T TIGR03019 276 FEPQP 280 (330)
T ss_pred Ceecc
Confidence 98654
No 130
>cd04265 DUF619-NAGS-U DUF619 domain of various N-acetylglutamate Synthases (NAGS) of the urea (U) cycle of humans and fish. This family includes the DUF619 domain of various N-acetylglutamate synthases (NAGS) of the urea cycle found in humans and fish, the DUF619 domain of the NAGS of the fungal arginine-biosynthetic pathway (FABP), as well as the DUF619 domain present in C-terminal of a NAG kinase-like domain in a limited number of predicted NAGSs found in bacteria and Dictyostelium. Ureogenic NAGS is a mitochondrial enzyme catalyzing the formation of NAG from acetylcoenzyme A and L-glutamate. NAGS is an essential allosteric activator of carbamylphosphate synthase I, the first and rate limiting enzyme of the urea cycle. Domain architecture of ureogenic and fungal NAGS consists of an N-terminal NAG kinase-like domain and a C-terminal DUF619 domain. The DUF619 domain function has yet to be characterized.
Probab=75.50 E-value=5.8 Score=37.88 Aligned_cols=48 Identities=19% Similarity=0.165 Sum_probs=38.0
Q ss_pred eeCCeEEEEEEEEEeC-CeeEEEeeeEeeccccCCChhHHHHHHHHHHh
Q 002312 811 TVNSSVVSAGILRVFG-QEVAELPLVATSKINHGKGYFQLLFACIEKLL 858 (937)
Q Consensus 811 ~~~~~vVsaA~lri~g-~~vAEiplVAT~~~yRgqG~gr~L~~~IE~~l 858 (937)
+.++..=++|.+..-. .+++-|-.+|+.+..||+|+++.|+.+|-+..
T Consensus 15 y~~e~y~~~aivt~~~~~~~~yLdKfaV~~~~~g~gv~d~vf~~i~~d~ 63 (99)
T cd04265 15 YLSEGYNAAAIVTNEEVDGVPYLDKFAVSSSAQGEGTGEALWRRLRRDF 63 (99)
T ss_pred EEeCCCcEEEEEeccCCCCceEEEEEEEchhhhhcChHHHHHHHHHhhC
Confidence 4445555666665433 47999999999999999999999999998874
No 131
>PF11793 FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A.
Probab=75.36 E-value=1.9 Score=38.37 Aligned_cols=52 Identities=23% Similarity=0.393 Sum_probs=19.9
Q ss_pred ccccccCccCCcCcccccCCCCceeccc--CCCcccccccCC--C---CCCC----CCCcccccccccc
Q 002312 547 IICHCCNSEVSPSQFEAHADGGNLLPCD--GCPRAFHKECAS--L---SSIP----QGDWYCKYCQNMF 604 (937)
Q Consensus 547 i~C~~C~~eiSpS~FE~HAdgG~Ll~CD--gCp~afH~~CL~--L---~~vP----eG~W~Cp~C~~~~ 604 (937)
..|.+|...+.. .+.-..+.|+ .|...||..||. + +.-. --.+.||.|...+
T Consensus 3 ~~C~IC~~~~~~------~~~~p~~~C~n~~C~~~fH~~CL~~wf~~~~~~~~~~~~~~G~CP~C~~~i 65 (70)
T PF11793_consen 3 LECGICYSYRLD------DGEIPDVVCPNPSCGKKFHLLCLSEWFLSLEKSRQSFIPIFGECPYCSSPI 65 (70)
T ss_dssp -S-SSS--SS-T------T-----B--S-TT----B-SGGGHHHHHHHHSSS-TTT--EEE-TTT-SEE
T ss_pred CCCCcCCcEecC------CCCcCceEcCCcccCCHHHHHHHHHHHHHcccCCeeecccccCCcCCCCee
Confidence 569999865431 0122348898 899999999994 1 1111 1236799998764
No 132
>KOG1473 consensus Nucleosome remodeling factor, subunit NURF301/BPTF [Chromatin structure and dynamics; Transcription]
Probab=73.06 E-value=1.8 Score=55.29 Aligned_cols=45 Identities=27% Similarity=0.742 Sum_probs=39.4
Q ss_pred CccccccCCCCCCCCCCCCceeeCCCCCCcCCCCCCCcCcCCcccCCCCCcceecCCcc
Q 002312 647 SGCLLCRGCDFSKSGFGPRTILLCDQCEREFHVGCLKKHKMADLRELPKGKWFCCMDCS 705 (937)
Q Consensus 647 ~~C~vC~~~df~~sgf~~~tLL~CDqCdr~yHv~CL~p~~~~~L~evP~g~WfCc~~C~ 705 (937)
.+|.+|.+ .+.++.|..|++.||..|+.+ |+.++|...|-| ..|.
T Consensus 345 dhcrf~~d---------~~~~lc~Et~prvvhlEcv~h----P~~~~~s~~~e~-evc~ 389 (1414)
T KOG1473|consen 345 DHCRFCHD---------LGDLLCCETCPRVVHLECVFH----PRFAVPSAFWEC-EVCN 389 (1414)
T ss_pred ccccccCc---------ccceeecccCCceEEeeecCC----ccccCCCccchh-hhhh
Confidence 46999985 468999999999999999987 788999999999 7774
No 133
>KOG2535 consensus RNA polymerase II elongator complex, subunit ELP3/histone acetyltransferase [Chromatin structure and dynamics; Transcription]
Probab=72.05 E-value=5.2 Score=45.72 Aligned_cols=65 Identities=17% Similarity=0.290 Sum_probs=45.6
Q ss_pred EEEEeCCeeEEEeeeEeec-cccCCChhHHHHHHHHHHhhhc-CccEEEecChhhhHHHHHhccCcEEcCH
Q 002312 821 ILRVFGQEVAELPLVATSK-INHGKGYFQLLFACIEKLLSFL-RVKSIVLPAAEEAESIWTDKFGFKKIDP 889 (937)
Q Consensus 821 ~lri~g~~vAEiplVAT~~-~yRgqG~gr~L~~~IE~~l~~l-gV~~LvLpA~~ea~~~w~~kfGF~~i~~ 889 (937)
-||++|.- +|.-+-++ .||.||||.+||++.|+.+++- |-..+-+-+-......|.+ |||..-++
T Consensus 481 ELHVYGs~---vpv~~rDp~KfQHQG~GtLLmeEAERIAr~EHgS~KiavISGVGtR~YY~k-lGY~LdGP 547 (554)
T KOG2535|consen 481 ELHVYGSV---VPVHSRDPTKFQHQGFGTLLMEEAERIAREEHGSGKIAVISGVGTRNYYRK-LGYELDGP 547 (554)
T ss_pred eeeeccee---eecccCCchhhhhcchhhHHHHHHHHHHHHhcCCCceEEEeccchHHHHHh-hCeeecCh
Confidence 35555532 33333333 4999999999999999999865 4456666666666777777 99987665
No 134
>KOG4628 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=68.46 E-value=3.7 Score=47.14 Aligned_cols=46 Identities=24% Similarity=0.585 Sum_probs=31.8
Q ss_pred ccccccCccCCcCcccccCCCCceecccCCCcccccccCC--CCCCCCCCcccccccccc
Q 002312 547 IICHCCNSEVSPSQFEAHADGGNLLPCDGCPRAFHKECAS--LSSIPQGDWYCKYCQNMF 604 (937)
Q Consensus 547 i~C~~C~~eiSpS~FE~HAdgG~Ll~CDgCp~afH~~CL~--L~~vPeG~W~Cp~C~~~~ 604 (937)
+.|.+|.+.+. .|+.+-==-|.+.||..|++ |.++ .-+||-|+..+
T Consensus 230 ~~CaIClEdY~---------~GdklRiLPC~H~FH~~CIDpWL~~~---r~~CPvCK~di 277 (348)
T KOG4628|consen 230 DTCAICLEDYE---------KGDKLRILPCSHKFHVNCIDPWLTQT---RTFCPVCKRDI 277 (348)
T ss_pred ceEEEeecccc---------cCCeeeEecCCCchhhccchhhHhhc---CccCCCCCCcC
Confidence 79999997653 33333334567999999997 3222 34799999754
No 135
>KOG2752 consensus Uncharacterized conserved protein, contains N-recognin-type Zn-finger [General function prediction only]
Probab=64.80 E-value=5.7 Score=44.85 Aligned_cols=103 Identities=17% Similarity=0.275 Sum_probs=57.0
Q ss_pred CCCceecccCCCcccccccCCCCCCCCCCcccccccccccccccccccccccccCccccccchhhhhhhhhhhhcccccc
Q 002312 566 DGGNLLPCDGCPRAFHKECASLSSIPQGDWYCKYCQNMFERKRFLQHDANAVEAGRVSGVDSVEQITKRCIRIVKNLEAE 645 (937)
Q Consensus 566 dgG~Ll~CDgCp~afH~~CL~L~~vPeG~W~Cp~C~~~~~~ek~l~~n~naia~gr~~Gvd~ieqi~~R~iR~vkd~e~e 645 (937)
+++....|-.|--.+|-.-..+.-+-.+.+.|--|..++.+... ++ ...+..++..+. +.+ ...
T Consensus 64 ~~~~agvC~~C~~~CH~~H~lveL~tKR~FrCDCg~sk~g~~sc---~l--~~~~~~~n~~N~-------YNh----Nfq 127 (345)
T KOG2752|consen 64 APEMAGVCYACSLSCHDGHELVELYTKRNFRCDCGNSKFGRCSC---NL--LEDKDAENSENL-------YNH----NFQ 127 (345)
T ss_pred ChhhceeEEEeeeeecCCceeeeccccCCccccccccccccccc---cc--ccccccccchhh-------hhh----hhc
Confidence 56678888888878887776666666778988777665543211 00 000000000000 000 001
Q ss_pred CCccccccCCCCCCCCCCCCceeeCCCCCCcCC-CCCCCcC
Q 002312 646 LSGCLLCRGCDFSKSGFGPRTILLCDQCEREFH-VGCLKKH 685 (937)
Q Consensus 646 ~~~C~vC~~~df~~sgf~~~tLL~CDqCdr~yH-v~CL~p~ 685 (937)
..+|. |........-...+.|++|-.|+-||| .+|++..
T Consensus 128 G~~C~-Cd~~Ypdp~~~~e~~m~QC~iCEDWFHce~c~~~~ 167 (345)
T KOG2752|consen 128 GLFCK-CDTPYPDPVRTEEGEMLQCVICEDWFHCEGCMQAK 167 (345)
T ss_pred ceeEE-ecCCCCCccccccceeeeEEeccchhcccccCccc
Confidence 12243 554432211224678999999999999 9999764
No 136
>PF15446 zf-PHD-like: PHD/FYVE-zinc-finger like domain
Probab=62.53 E-value=4.1 Score=42.35 Aligned_cols=35 Identities=20% Similarity=0.555 Sum_probs=26.6
Q ss_pred cccccCCCCCCCCCCCCceeeCCCCCCcCCCCCCCcCc
Q 002312 649 CLLCRGCDFSKSGFGPRTILLCDQCEREFHVGCLKKHK 686 (937)
Q Consensus 649 C~vC~~~df~~sgf~~~tLL~CDqCdr~yHv~CL~p~~ 686 (937)
|..|+..+ .....+.|+.|..|-.+||..||.+..
T Consensus 2 C~~C~~~g---~~~~kG~Lv~CQGCs~sYHk~CLG~Rs 36 (175)
T PF15446_consen 2 CDTCGYEG---DDRNKGPLVYCQGCSSSYHKACLGPRS 36 (175)
T ss_pred cccccCCC---CCccCCCeEEcCccChHHHhhhcCCcc
Confidence 77885421 123467899999999999999998753
No 137
>KOG4135 consensus Predicted phosphoglucosamine acetyltransferase [Carbohydrate transport and metabolism]
Probab=62.12 E-value=17 Score=37.43 Aligned_cols=58 Identities=14% Similarity=0.217 Sum_probs=39.2
Q ss_pred eEEEeeeEeeccccCCChhHHHHHHHHHHhhh-cCccEEEecC--hhh-hHHHHHhccCcEEc
Q 002312 829 VAELPLVATSKINHGKGYFQLLFACIEKLLSF-LRVKSIVLPA--AEE-AESIWTDKFGFKKI 887 (937)
Q Consensus 829 vAEiplVAT~~~yRgqG~gr~L~~~IE~~l~~-lgV~~LvLpA--~~e-a~~~w~~kfGF~~i 887 (937)
++|+-+.---|..||+|+|+..|.++...+.+ +++.+..+-. +.. ...++. ||+|.-+
T Consensus 107 ~gE~EvMIAEP~~RgKG~G~eav~~ml~y~~s~l~l~Ky~vkig~~nk~sl~lFk-k~~f~q~ 168 (185)
T KOG4135|consen 107 TGEVEVMIAEPRGRGKGIGTEAVRAMLAYAYSVLKLDKYEVKIGMDNKPSLRLFK-KFLFTQV 168 (185)
T ss_pred eeeEEEEEecccccCCCccHHHHHHHHHHHHHHhhhheEEEEecCCCchHHHHHH-Hhhheee
Confidence 45666666779999999999999998887654 4665555443 222 233444 4998754
No 138
>PF01233 NMT: Myristoyl-CoA:protein N-myristoyltransferase, N-terminal domain; InterPro: IPR022676 Myristoyl-CoA:protein N-myristoyltransferase (2.3.1.97 from EC) (Nmt) [] is the enzyme responsible for transferring a myristate group on the N-terminal glycine of a number of cellular eukaryotics and viral proteins. Nmt is a monomeric protein of about 50 to 60kDa whose sequence appears to be well conserved. The N and C-terminal domains of NMT are structurally similar, each adopting an acyl-CoA N-acyltransferase-like fold. This entry represents the N-terminal region. ; GO: 0004379 glycylpeptide N-tetradecanoyltransferase activity; PDB: 2P6G_B 2P6F_F 2P6E_A 1IIC_A 1IID_A 2NMT_A 4A33_A 3H5Z_A 4A2Z_A 2WSA_A ....
Probab=61.27 E-value=66 Score=33.56 Aligned_cols=111 Identities=14% Similarity=0.222 Sum_probs=71.3
Q ss_pred cCcceeEccCCCCChhhHHHHHHHHHhhhhcCCCcccCCCCCCccccccccccC-----CCceecceEEEEEee--CCeE
Q 002312 744 IDVRWRLLSGKAATPETRLLLSQAVAIFHDCFDPIVDSISGRDLIPSMVYGRNL-----RGQEFGGMYCAILTV--NSSV 816 (937)
Q Consensus 744 ~dikWqLLsgk~~s~e~~~~La~AL~If~EcF~Pivd~~TgrDLIp~MVy~r~~-----~~~~f~GfY~~VL~~--~~~v 816 (937)
.+|.|..+. ..+...|.+.-..+.|-+.- |. |-.-..-|+.+| .--.|.-.|.+.+.. ++++
T Consensus 22 ~gF~W~~~d-----l~d~~~l~ely~lL~~nYVE--Dd----d~~fRf~YS~efL~WaL~pPg~~~~whiGVR~~~~~kL 90 (162)
T PF01233_consen 22 DGFEWSTLD-----LNDDEELKELYELLNENYVE--DD----DNMFRFDYSKEFLKWALKPPGWKKEWHIGVRVKSSKKL 90 (162)
T ss_dssp TTEEEEE-------TTSHHHHHHHHHHHHHHSSB--TT----TSSEEE---HHHHHHHHTSTT--GGGEEEEEETTTTEE
T ss_pred CCCEEEecC-----CCCHHHHHHHHHHHHhcCcc--CC----cceEEeeCCHHHHhheeeCcCCccceEEEEEECCCCEE
Confidence 368898763 23456677788888888832 11 222224555553 233444445555554 5777
Q ss_pred EEE-----EEEEEeCC--eeEEEeeeEeeccccCCChhHHHHHHHHHHhhhcCccE
Q 002312 817 VSA-----GILRVFGQ--EVAELPLVATSKINHGKGYFQLLFACIEKLLSFLRVKS 865 (937)
Q Consensus 817 Vsa-----A~lri~g~--~vAEiplVAT~~~yRgqG~gr~L~~~IE~~l~~lgV~~ 865 (937)
||- +.+||.+. ..+||=++.+++.+|.+++.=.|+.+|=+.+...||-.
T Consensus 91 vgfIsaip~~irv~~~~~~~~eINFLCVhKklRskrlAPvLIkEItRRvn~~gI~q 146 (162)
T PF01233_consen 91 VGFISAIPATIRVRDKVIKMVEINFLCVHKKLRSKRLAPVLIKEITRRVNLQGIWQ 146 (162)
T ss_dssp EEEEEEEEEEEEETTEEEEEEEEEEEEE-GGGTTSSHHHHHHHHHHHHHHTTT--E
T ss_pred EEEEccceEEEEEeeeEeeeeeEEEEeecHhHhhcCCcHHHHHHHHHHhhhcCcee
Confidence 773 56788775 69999999999999999999999999999988888754
No 139
>PF01853 MOZ_SAS: MOZ/SAS family; InterPro: IPR002717 Moz is a monocytic leukemia Zn_finger protein and the SAS protein from Saccharomyces cerevisiae (Baker's yeast) is involved in silencing the Hmr locus. These proteins were reported to be homologous to acetyltransferases [] but this similarity is not supported by standard sequence analysis.; GO: 0016747 transferase activity, transferring acyl groups other than amino-acyl groups, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 3TO6_A 1MJA_A 1MJ9_A 3TO7_A 3TO9_A 1MJB_A 1FY7_A 2OZU_A 2RC4_A 2OU2_A ....
Probab=61.12 E-value=35 Score=36.37 Aligned_cols=86 Identities=16% Similarity=0.073 Sum_probs=48.7
Q ss_pred HHHHHHHHhhhhcCCCcccCCCCCCccccccccccCCCceecceEEEEEeeCCe--EEEEEEEEEeCCeeEEEeeeEeec
Q 002312 762 LLLSQAVAIFHDCFDPIVDSISGRDLIPSMVYGRNLRGQEFGGMYCAILTVNSS--VVSAGILRVFGQEVAELPLVATSK 839 (937)
Q Consensus 762 ~~La~AL~If~EcF~Pivd~~TgrDLIp~MVy~r~~~~~~f~GfY~~VL~~~~~--vVsaA~lri~g~~vAEiplVAT~~ 839 (937)
....+-|-.|-..| +|++|=- |. .+---||++.-.+++. +||-=+=--...+--.|--|-|.|
T Consensus 26 ~~yCqnLcLlaKLF---Ld~Ktly-------yd-----v~~F~FYVl~e~d~~g~h~vGyFSKEk~s~~~~NLsCIl~lP 90 (188)
T PF01853_consen 26 KLYCQNLCLLAKLF---LDHKTLY-------YD-----VDPFLFYVLTEKDDDGFHIVGYFSKEKESWDNNNLSCILTLP 90 (188)
T ss_dssp HHHHHHHHHHHHTT----SSGCCT-------T------STTEEEEEEEEEETTEEEEEEEEEEESS-TT-EEESEEEE-G
T ss_pred chHHHHHHHHHHHH---hhCeEEE-------ee-----cCceEEEEEEEecCccceeEEEEEEEecccCCeeEeehhhcc
Confidence 56688899999999 4443321 11 1112366655444433 222222111112334677889999
Q ss_pred cccCCChhHHHHHHHHHHhhhcC
Q 002312 840 INHGKGYFQLLFACIEKLLSFLR 862 (937)
Q Consensus 840 ~yRgqG~gr~L~~~IE~~l~~lg 862 (937)
.||++|||+.|++.-=.+.+.-|
T Consensus 91 ~yQrkGyG~~LI~fSY~LSr~e~ 113 (188)
T PF01853_consen 91 PYQRKGYGRFLIDFSYELSRREG 113 (188)
T ss_dssp GGTTSSHHHHHHHHHHHHHHHTT
T ss_pred hhhhcchhhhhhhhHHHHhhccC
Confidence 99999999999987655555433
No 140
>COG3818 Predicted acetyltransferase, GNAT superfamily [General function prediction only]
Probab=60.85 E-value=25 Score=35.54 Aligned_cols=58 Identities=12% Similarity=0.248 Sum_probs=44.7
Q ss_pred EeeccccCCChhHHHHHHHHHHhhhcCccEEEec----ChhhhHHHHHhccCcEEcCHHHHH
Q 002312 836 ATSKINHGKGYFQLLFACIEKLLSFLRVKSIVLP----AAEEAESIWTDKFGFKKIDPELLS 893 (937)
Q Consensus 836 AT~~~yRgqG~gr~L~~~IE~~l~~lgV~~LvLp----A~~ea~~~w~~kfGF~~i~~~el~ 893 (937)
.|-..-||.|.+|+|...+-..+..-|-.+|++- --.+|...+...|||+.+++.++.
T Consensus 91 VVA~~aRGrG~aRalY~Dlf~~Ae~agy~~~tCEVn~DppnpasdaFHaalGF~eVG~a~ih 152 (167)
T COG3818 91 VVASRARGRGVARALYADLFSYAELAGYPYLTCEVNLDPPNPASDAFHAALGFHEVGQATIH 152 (167)
T ss_pred EEEecccccchHHHHHHHHHHHHHhcCCceEEEEecCCCCChHHHHHhhhcCceEccceEEe
Confidence 3334568999999999999999999999988763 223455666667999999986543
No 141
>PF13832 zf-HC5HC2H_2: PHD-zinc-finger like domain
Probab=59.80 E-value=3.6 Score=38.94 Aligned_cols=32 Identities=25% Similarity=0.679 Sum_probs=27.0
Q ss_pred CccccccCCCCCCCCCCCCceeeCCC--CCCcCCCCCCCcCc
Q 002312 647 SGCLLCRGCDFSKSGFGPRTILLCDQ--CEREFHVGCLKKHK 686 (937)
Q Consensus 647 ~~C~vC~~~df~~sgf~~~tLL~CDq--Cdr~yHv~CL~p~~ 686 (937)
..|.+|+.. .+..+.|.. |...||+.|....+
T Consensus 56 ~~C~iC~~~--------~G~~i~C~~~~C~~~fH~~CA~~~g 89 (110)
T PF13832_consen 56 LKCSICGKS--------GGACIKCSHPGCSTAFHPTCARKAG 89 (110)
T ss_pred CcCcCCCCC--------CceeEEcCCCCCCcCCCHHHHHHCC
Confidence 459999974 467999998 99999999997755
No 142
>PF14446 Prok-RING_1: Prokaryotic RING finger family 1
Probab=58.30 E-value=6.7 Score=33.72 Aligned_cols=35 Identities=23% Similarity=0.564 Sum_probs=27.7
Q ss_pred CccccccCCCCCCCCCCCCceeeCCCCCCcCCCCCCCcCc
Q 002312 647 SGCLLCRGCDFSKSGFGPRTILLCDQCEREFHVGCLKKHK 686 (937)
Q Consensus 647 ~~C~vC~~~df~~sgf~~~tLL~CDqCdr~yHv~CL~p~~ 686 (937)
..|.+|++.- .+.+.++.|..|...||-.|....+
T Consensus 6 ~~C~~Cg~~~-----~~~dDiVvCp~CgapyHR~C~~~~g 40 (54)
T PF14446_consen 6 CKCPVCGKKF-----KDGDDIVVCPECGAPYHRDCWEKAG 40 (54)
T ss_pred ccChhhCCcc-----cCCCCEEECCCCCCcccHHHHhhCC
Confidence 4599999751 1367899999999999999986543
No 143
>PRK00756 acyltransferase NodA; Provisional
Probab=58.29 E-value=16 Score=38.17 Aligned_cols=39 Identities=26% Similarity=0.162 Sum_probs=34.7
Q ss_pred eeEEEeeeEeeccccCCChhHHHHHHHHHHhhhcCccEEE
Q 002312 828 EVAELPLVATSKINHGKGYFQLLFACIEKLLSFLRVKSIV 867 (937)
Q Consensus 828 ~vAEiplVAT~~~yRgqG~gr~L~~~IE~~l~~lgV~~Lv 867 (937)
=+||+.+.||+++..|.|++..+ ..+--.|++|||..-|
T Consensus 84 LVaElGLygVRpDLEGlGi~~S~-r~m~PvLq~LgVPF~F 122 (196)
T PRK00756 84 LVAELGLYGVRPDLEGLGIAHSI-RAMYPVLQELGVPFAF 122 (196)
T ss_pred eEEEeeeeeeccccccccchhhH-HHHHHHHHhcCCCeec
Confidence 38999999999999999999877 6888999999998554
No 144
>PF13771 zf-HC5HC2H: PHD-like zinc-binding domain
Probab=57.93 E-value=3.4 Score=37.54 Aligned_cols=32 Identities=31% Similarity=0.766 Sum_probs=26.0
Q ss_pred CccccccCCCCCCCCCCCCceeeCCC--CCCcCCCCCCCcCc
Q 002312 647 SGCLLCRGCDFSKSGFGPRTILLCDQ--CEREFHVGCLKKHK 686 (937)
Q Consensus 647 ~~C~vC~~~df~~sgf~~~tLL~CDq--Cdr~yHv~CL~p~~ 686 (937)
..|.+|+.. .+..|.|.. |.+.||+.|....+
T Consensus 37 ~~C~~C~~~--------~Ga~i~C~~~~C~~~fH~~CA~~~~ 70 (90)
T PF13771_consen 37 LKCSICKKK--------GGACIGCSHPGCSRSFHVPCARKAG 70 (90)
T ss_pred CCCcCCCCC--------CCeEEEEeCCCCCcEEChHHHccCC
Confidence 359999963 267899985 99999999998754
No 145
>PF13880 Acetyltransf_13: ESCO1/2 acetyl-transferase
Probab=54.96 E-value=9.3 Score=34.46 Aligned_cols=26 Identities=15% Similarity=0.126 Sum_probs=23.1
Q ss_pred EeeeEeeccccCCChhHHHHHHHHHH
Q 002312 832 LPLVATSKINHGKGYFQLLFACIEKL 857 (937)
Q Consensus 832 iplVAT~~~yRgqG~gr~L~~~IE~~ 857 (937)
|.+|=|.+.+||+|+.++|++++-+.
T Consensus 8 I~RIWV~~~~RR~GIAt~Lld~ar~~ 33 (70)
T PF13880_consen 8 ISRIWVSPSHRRKGIATRLLDAAREN 33 (70)
T ss_pred eEEEEeChhhhhhhHHHHHHHHHHHh
Confidence 66777899999999999999998775
No 146
>COG5628 Predicted acetyltransferase [General function prediction only]
Probab=54.61 E-value=39 Score=33.83 Aligned_cols=73 Identities=11% Similarity=0.086 Sum_probs=51.9
Q ss_pred EEEEeeCCeEEEEEEEE--EeC-----CeeEEEeeeEeeccccCCChhHHHHHHHHHHhhhcCccEEEecChhhhHHHHH
Q 002312 807 CAILTVNSSVVSAGILR--VFG-----QEVAELPLVATSKINHGKGYFQLLFACIEKLLSFLRVKSIVLPAAEEAESIWT 879 (937)
Q Consensus 807 ~~VL~~~~~vVsaA~lr--i~g-----~~vAEiplVAT~~~yRgqG~gr~L~~~IE~~l~~lgV~~LvLpA~~ea~~~w~ 879 (937)
.++...+|.+||-+.+- ++. -.++|+ -+...|||+||||+...+|-.+.+.+ -+-.+++--..|..||.
T Consensus 39 ~~~~~~~~~~igf~l~L~~~~~~~~iD~~~~ef---FIi~k~~~~GvGR~aaK~If~~~~g~-w~Va~i~EN~PA~~fwK 114 (143)
T COG5628 39 AWLFRIGGLPVGFALVLDLAHSPTPIDRAVAEF---FIVRKHRRRGVGRAAAKAIFGSAWGV-WQVATVRENTPARAFWK 114 (143)
T ss_pred eeEEEECCceeeeeeeecccCCCCcccccchhe---EeeehhhccchhHHHHHHHHHHhhce-EEEEEeccCChhHHHHH
Confidence 44556789999988753 211 134443 44567999999999999998886433 34567788888999999
Q ss_pred hccCc
Q 002312 880 DKFGF 884 (937)
Q Consensus 880 ~kfGF 884 (937)
+ +-+
T Consensus 115 ~-~~~ 118 (143)
T COG5628 115 R-VAE 118 (143)
T ss_pred h-hhc
Confidence 9 444
No 147
>KOG1734 consensus Predicted RING-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=54.20 E-value=3.2 Score=45.89 Aligned_cols=56 Identities=21% Similarity=0.431 Sum_probs=34.5
Q ss_pred CCcccccccCccCCcCcccccCCCCcee---cccCCCcccccccCCCCCCCCCCcccccccccc
Q 002312 544 GLGIICHCCNSEVSPSQFEAHADGGNLL---PCDGCPRAFHKECASLSSIPQGDWYCKYCQNMF 604 (937)
Q Consensus 544 ~~~i~C~~C~~eiSpS~FE~HAdgG~Ll---~CDgCp~afH~~CL~L~~vPeG~W~Cp~C~~~~ 604 (937)
-++.+|.+|++.+..+. |.+-++ .=-.|.+.||..|+.---+--..-.||.|+.++
T Consensus 222 l~d~vCaVCg~~~~~s~-----~eegvienty~LsCnHvFHEfCIrGWcivGKkqtCPYCKekV 280 (328)
T KOG1734|consen 222 LSDSVCAVCGQQIDVSV-----DEEGVIENTYKLSCNHVFHEFCIRGWCIVGKKQTCPYCKEKV 280 (328)
T ss_pred CCcchhHhhcchheeec-----chhhhhhhheeeecccchHHHhhhhheeecCCCCCchHHHHh
Confidence 35678999998765542 222111 112588999999994112222346899998653
No 148
>PHA02929 N1R/p28-like protein; Provisional
Probab=53.76 E-value=5.2 Score=43.79 Aligned_cols=54 Identities=19% Similarity=0.340 Sum_probs=32.9
Q ss_pred CcccccccCccCCcCcccccCCCCceecccCCCcccccccCCCCCCCCCCcccccccccc
Q 002312 545 LGIICHCCNSEVSPSQFEAHADGGNLLPCDGCPRAFHKECASLSSIPQGDWYCKYCQNMF 604 (937)
Q Consensus 545 ~~i~C~~C~~eiSpS~FE~HAdgG~Ll~CDgCp~afH~~CL~L~~vPeG~W~Cp~C~~~~ 604 (937)
.+..|.+|...+.... ........-..|.+.||..|+. .|-...-.||.|+..+
T Consensus 173 ~~~eC~ICle~~~~~~----~~~~~~~vl~~C~H~FC~~CI~--~Wl~~~~tCPlCR~~~ 226 (238)
T PHA02929 173 KDKECAICMEKVYDKE----IKNMYFGILSNCNHVFCIECID--IWKKEKNTCPVCRTPF 226 (238)
T ss_pred CCCCCccCCcccccCc----cccccceecCCCCCcccHHHHH--HHHhcCCCCCCCCCEe
Confidence 4578999997543210 0000112223688999999994 3434456899999764
No 149
>PF13444 Acetyltransf_5: Acetyltransferase (GNAT) domain
Probab=53.34 E-value=27 Score=32.64 Aligned_cols=25 Identities=20% Similarity=0.292 Sum_probs=21.3
Q ss_pred CeeEEEeeeEeeccccCCChhHHHH
Q 002312 827 QEVAELPLVATSKINHGKGYFQLLF 851 (937)
Q Consensus 827 ~~vAEiplVAT~~~yRgqG~gr~L~ 851 (937)
..++||-++||.++||+...-..|.
T Consensus 76 ~~~~EisRl~V~~~~R~~~~~~~L~ 100 (101)
T PF13444_consen 76 RRVAEISRLCVHPEYRRRKVLLLLW 100 (101)
T ss_pred CcEEEeehheECHhHCCChHHHHHh
Confidence 3689999999999999998777664
No 150
>PF14569 zf-UDP: Zinc-binding RING-finger; PDB: 1WEO_A.
Probab=52.34 E-value=3.3 Score=37.98 Aligned_cols=58 Identities=24% Similarity=0.629 Sum_probs=26.4
Q ss_pred cCCcccccccCccCCcCcccccCCCCceecccCCCcccccccCCCCCCCCCCcccccccccccc
Q 002312 543 NGLGIICHCCNSEVSPSQFEAHADGGNLLPCDGCPRAFHKECASLSSIPQGDWYCKYCQNMFER 606 (937)
Q Consensus 543 ~~~~i~C~~C~~eiSpS~FE~HAdgG~Ll~CDgCp~afH~~CL~L~~vPeG~W~Cp~C~~~~~~ 606 (937)
.-++.+|.+|+..+-. .++|.-.+.|..|.......|+.. +..+|.-.||.|+..+.+
T Consensus 6 ~~~~qiCqiCGD~VGl-----~~~Ge~FVAC~eC~fPvCr~CyEY-Erkeg~q~CpqCkt~ykr 63 (80)
T PF14569_consen 6 NLNGQICQICGDDVGL-----TENGEVFVACHECAFPVCRPCYEY-ERKEGNQVCPQCKTRYKR 63 (80)
T ss_dssp --SS-B-SSS--B--B------SSSSB--S-SSS-----HHHHHH-HHHTS-SB-TTT--B---
T ss_pred hcCCcccccccCcccc-----CCCCCEEEEEcccCCccchhHHHH-HhhcCcccccccCCCccc
Confidence 3567899999976543 337778899999987777778853 456788899999976544
No 151
>PF04377 ATE_C: Arginine-tRNA-protein transferase, C terminus; InterPro: IPR007472 Arginine-tRNA-protein transferase catalyses the post-translational conjugation of arginine to the N terminus of a protein. In eukaryotes, this functions as part of the N terminus rule pathway of protein degradation by conjugating a destabilising amino acid to the N-terminal aspartate or glutamate of a protein, targeting the protein for ubiquitin-dependent proteolysis. N-terminal cysteine is sometimes modified []. In Saccharomyces cerevisiae, Cys20, 23, 94 and/or 95 are thought to be important for activity []. Of these, only Cys 94 appears to be completely conserved in this family. This entry represents the C-terminal region of the enzyme arginine-tRNA-protein transferase, found in both eukaryotic and prokaryotic enzymes.; GO: 0004057 arginyltransferase activity, 0016598 protein arginylation
Probab=52.01 E-value=60 Score=32.45 Aligned_cols=61 Identities=5% Similarity=0.012 Sum_probs=49.8
Q ss_pred EEEEEeeCCeEEEEEEEEEeCCeeEEEeeeEeeccccCCChhHHHHHHHHHHhhhcCccEEE
Q 002312 806 YCAILTVNSSVVSAGILRVFGQEVAELPLVATSKINHGKGYFQLLFACIEKLLSFLRVKSIV 867 (937)
Q Consensus 806 Y~~VL~~~~~vVsaA~lri~g~~vAEiplVAT~~~yRgqG~gr~L~~~IE~~l~~lgV~~Lv 867 (937)
+-+-...+|++|++|.+.+..+.+.-|=.+= +|++...++|...+..-.+.++++|.+.+-
T Consensus 40 ~~~~~~~~~kLiav~v~D~l~~glSaVY~fy-DPd~~~~SlG~~~iL~eI~~a~~~~l~y~Y 100 (128)
T PF04377_consen 40 YHLEYRLDGKLIAVAVVDILPDGLSAVYTFY-DPDYSKRSLGTYSILREIELARELGLPYYY 100 (128)
T ss_pred EEEEEEeCCeEEEEEEeecccchhhheeeee-CCCccccCcHHHHHHHHHHHHHHcCCCEEe
Confidence 3334468999999999988777655544443 899999999999999999999999999998
No 152
>KOG1428 consensus Inhibitor of type V adenylyl cyclases/Neuronal presynaptic protein Highwire/PAM/RPM-1 [Signal transduction mechanisms]
Probab=51.64 E-value=2.7 Score=54.80 Aligned_cols=31 Identities=32% Similarity=0.729 Sum_probs=22.5
Q ss_pred CCCcccccccCC--C------CCCCCCCccccccccccc
Q 002312 575 GCPRAFHKECAS--L------SSIPQGDWYCKYCQNMFE 605 (937)
Q Consensus 575 gCp~afH~~CL~--L------~~vPeG~W~Cp~C~~~~~ 605 (937)
+|.+.||+.|.. | +.|-.|--.||.|.+++.
T Consensus 3506 ~C~HiFHlqC~R~vLE~RW~GPRItF~FisCPiC~n~In 3544 (3738)
T KOG1428|consen 3506 DCSHIFHLQCCRRVLENRWLGPRITFGFISCPICKNKIN 3544 (3738)
T ss_pred CCccchhHHHHHHHHHhcccCCeeEEeeeecccccchhh
Confidence 599999999984 2 233345578999998753
No 153
>KOG1701 consensus Focal adhesion adaptor protein Paxillin and related LIM proteins [Signal transduction mechanisms]
Probab=50.35 E-value=3.6 Score=48.05 Aligned_cols=35 Identities=26% Similarity=0.539 Sum_probs=21.2
Q ss_pred ccccccCCCCCCCCCCCCceeeCCCCCCcCCCCCCCc
Q 002312 648 GCLLCRGCDFSKSGFGPRTILLCDQCEREFHVGCLKK 684 (937)
Q Consensus 648 ~C~vC~~~df~~sgf~~~tLL~CDqCdr~yHv~CL~p 684 (937)
.|.+|+..-....|- ++.+.=--=+|.||++|.+.
T Consensus 396 rCs~C~~PI~P~~G~--~etvRvvamdr~fHv~CY~C 430 (468)
T KOG1701|consen 396 RCSVCGNPILPRDGK--DETVRVVAMDRDFHVNCYKC 430 (468)
T ss_pred chhhccCCccCCCCC--cceEEEEEccccccccceeh
Confidence 499998765444332 22333233468899999865
No 154
>COG5194 APC11 Component of SCF ubiquitin ligase and anaphase-promoting complex [Posttranslational modification, protein turnover, chaperones / Cell division and chromosome partitioning]
Probab=50.04 E-value=4.7 Score=37.24 Aligned_cols=56 Identities=18% Similarity=0.376 Sum_probs=32.6
Q ss_pred ccccccCccCCcC----cccccCCCCceecccCCCcccccccCCCCCCCCCCcccccccccc
Q 002312 547 IICHCCNSEVSPS----QFEAHADGGNLLPCDGCPRAFHKECASLSSIPQGDWYCKYCQNMF 604 (937)
Q Consensus 547 i~C~~C~~eiSpS----~FE~HAdgG~Ll~CDgCp~afH~~CL~L~~vPeG~W~Cp~C~~~~ 604 (937)
+.|++|+..+... +|....++.=-+.=..|.++||..|+. .|-+..-.||.+++.+
T Consensus 21 d~CaICRnhim~~C~eCq~~~~~~~eC~v~wG~CnHaFH~HCI~--rWL~Tk~~CPld~q~w 80 (88)
T COG5194 21 DVCAICRNHIMGTCPECQFGMTPGDECPVVWGVCNHAFHDHCIY--RWLDTKGVCPLDRQTW 80 (88)
T ss_pred chhhhhhccccCcCcccccCCCCCCcceEEEEecchHHHHHHHH--HHHhhCCCCCCCCcee
Confidence 6788887654321 121211222112223599999999994 3333467899998764
No 155
>PLN03238 probable histone acetyltransferase MYST; Provisional
Probab=48.83 E-value=36 Score=38.43 Aligned_cols=33 Identities=21% Similarity=0.136 Sum_probs=26.1
Q ss_pred EEEeeeEeeccccCCChhHHHHHHHHHHhhhcC
Q 002312 830 AELPLVATSKINHGKGYFQLLFACIEKLLSFLR 862 (937)
Q Consensus 830 AEiplVAT~~~yRgqG~gr~L~~~IE~~l~~lg 862 (937)
-.|--|-|.|.||++|||+.|++.-=++.+.-|
T Consensus 156 nNLaCIltLPpyQrkGyG~~LI~fSYeLSr~Eg 188 (290)
T PLN03238 156 YNLACILTLPPYQRKGYGKFLISFAYELSKREG 188 (290)
T ss_pred CcEEEEEecChhhhccHhHhHHHHHhHHhhccC
Confidence 447788999999999999999987655554444
No 156
>PTZ00064 histone acetyltransferase; Provisional
Probab=47.24 E-value=22 Score=42.70 Aligned_cols=84 Identities=18% Similarity=0.080 Sum_probs=47.2
Q ss_pred HHHHHHHHhhhhcCCCcccCCCCCCccccccccccCCCceecceEEEEEe-eC---CeEEEEEEEEEeCCeeEEEeeeEe
Q 002312 762 LLLSQAVAIFHDCFDPIVDSISGRDLIPSMVYGRNLRGQEFGGMYCAILT-VN---SSVVSAGILRVFGQEVAELPLVAT 837 (937)
Q Consensus 762 ~~La~AL~If~EcF~Pivd~~TgrDLIp~MVy~r~~~~~~f~GfY~~VL~-~~---~~vVsaA~lri~g~~vAEiplVAT 837 (937)
....+-|-.|-..| +|++|=- .|...|.=+||. .| -.+||-=+=-..-.+--.|--|-|
T Consensus 330 klYCQNLCLLAKLF---LDhKTLY--------------yDVdpFlFYVLtE~D~~G~HiVGYFSKEK~S~~~nNLACILt 392 (552)
T PTZ00064 330 RGYAENLCYLAKLF---LDHKTLQ--------------YDVEPFLFYIVTEVDEEGCHIVGYFSKEKVSLLHYNLACILT 392 (552)
T ss_pred hhHHHHHHHHHHHh---ccCcccc--------------ccccceEEEEEEEecCCCcEEEEEecccccCcccCceEEEEe
Confidence 45577788888888 4544321 123333333433 22 234432221111112235778899
Q ss_pred eccccCCChhHHHHHHHHHHhhhcC
Q 002312 838 SKINHGKGYFQLLFACIEKLLSFLR 862 (937)
Q Consensus 838 ~~~yRgqG~gr~L~~~IE~~l~~lg 862 (937)
.|.||++|||+.|++.==.+.+.-|
T Consensus 393 LPpyQRKGYGklLIdfSYeLSrrEg 417 (552)
T PTZ00064 393 LPCYQRKGYGKLLVDLSYKLSLKEG 417 (552)
T ss_pred cchhhhcchhhhhhhhhhhhhhhcC
Confidence 9999999999999986555544333
No 157
>PF12261 T_hemolysin: Thermostable hemolysin; InterPro: IPR022050 This family of proteins is found in bacteria. Proteins in this family are typically between 200 and 228 amino acids in length. T_hemolysin is a pore-forming toxin of bacteria, able to lyse erythrocytes from a number of mammalian species.
Probab=47.21 E-value=34 Score=36.09 Aligned_cols=63 Identities=21% Similarity=0.321 Sum_probs=50.3
Q ss_pred eeEEEeeeEeeccccCCChhHHHHHHHHHHhhhcCccEEEecChhhhHHHHHhccCcEE--cCHHHHHHH
Q 002312 828 EVAELPLVATSKINHGKGYFQLLFACIEKLLSFLRVKSIVLPAAEEAESIWTDKFGFKK--IDPELLSIY 895 (937)
Q Consensus 828 ~vAEiplVAT~~~yRgqG~gr~L~~~IE~~l~~lgV~~LvLpA~~ea~~~w~~kfGF~~--i~~~el~~~ 895 (937)
.++||.-+|.. +.|.++.|+..+-..|...|.+.++.-|.........+ +|+.. +.+.+-.++
T Consensus 86 ~IvEvGnLAs~----~~g~~~~l~~~l~~~L~~~g~~w~vfTaT~~lr~~~~r-lgl~~~~La~Ad~~rl 150 (179)
T PF12261_consen 86 QIVEVGNLASF----SPGAARLLFAALAQLLAQQGFEWVVFTATRQLRNLFRR-LGLPPTVLADADPSRL 150 (179)
T ss_pred heeEeechhhc----CcccHHHHHHHHHHHHHHCCCCEEEEeCCHHHHHHHHH-cCCCceeccccCHhHc
Confidence 46777777655 58999999999999999999999999999999999888 77654 444443333
No 158
>PF10497 zf-4CXXC_R1: Zinc-finger domain of monoamine-oxidase A repressor R1; InterPro: IPR018866 R1 is a transcription factor repressor that inhibits monoamine oxidase A gene expression. This domain is a four-CXXC zinc finger putative DNA-binding domain found at the C-terminal end of R1. The domain carries 12 cysteines of which four pairs are of the CXXC type [].
Probab=46.45 E-value=9.2 Score=36.85 Aligned_cols=49 Identities=22% Similarity=0.593 Sum_probs=32.1
Q ss_pred CCcccccccCccCCcCcccccCCCCceecc------cCC---CcccccccCC------C-CCCCCCCcccccccc
Q 002312 544 GLGIICHCCNSEVSPSQFEAHADGGNLLPC------DGC---PRAFHKECAS------L-SSIPQGDWYCKYCQN 602 (937)
Q Consensus 544 ~~~i~C~~C~~eiSpS~FE~HAdgG~Ll~C------DgC---p~afH~~CL~------L-~~vPeG~W~Cp~C~~ 602 (937)
..+..|..|.+.. .+....| ..| ...|.-.||- + +...+++|.||.|+.
T Consensus 5 ~~g~~CHqCrqKt----------~~~~~~C~~~~~~~~C~~~~~~fC~~CL~~ryge~~~ev~~~~~W~CP~Crg 69 (105)
T PF10497_consen 5 VNGKTCHQCRQKT----------LDFKTICTGHWKNSSCRGCRGKFCGGCLRNRYGENVEEVLEDPNWKCPKCRG 69 (105)
T ss_pred CCCCCchhhcCCC----------CCCceEcCCCCCCCCCccCcceehHhHHHHHHhhhHHHHhcCCceECCCCCC
Confidence 4577888888642 2223344 445 8888888873 2 223567899999984
No 159
>PF04958 AstA: Arginine N-succinyltransferase beta subunit; InterPro: IPR007041 Arginine N-succinyltransferase catalyses the transfer of succinyl-CoA to arginine to produce succinylarginine. This is the first step in arginine catabolism via the arginine succinyltransferase pathway. Six major L-arginine-degrading pathways have been described for prokaryotes []. Many bacteria arginine succinyltransferase 2.3.1.109 from EC, which is the AstA protein of the succinyltransferase (ast) pathway operon consists of five genes. In a few species, such as Pseudomonas aeruginosa, a tandem gene pair encodes alpha and beta subunits of a heterodimer that is designated arginine and ornithine succinyltransferase (AOST). This entry represents the family of proteins that make up the beta subunit of the heterodimer of Ast and AOST.; GO: 0008791 arginine N-succinyltransferase activity, 0006527 arginine catabolic process; PDB: 1YLE_A.
Probab=46.16 E-value=35 Score=39.45 Aligned_cols=107 Identities=20% Similarity=0.208 Sum_probs=57.7
Q ss_pred hhhHHHHHHHHHhhhhcC-CCcccCCCCCCccccccccccCCCceecceEEEEEee--CCeEEEEEEEEEe-C-------
Q 002312 758 PETRLLLSQAVAIFHDCF-DPIVDSISGRDLIPSMVYGRNLRGQEFGGMYCAILTV--NSSVVSAGILRVF-G------- 826 (937)
Q Consensus 758 ~e~~~~La~AL~If~EcF-~Pivd~~TgrDLIp~MVy~r~~~~~~f~GfY~~VL~~--~~~vVsaA~lri~-g------- 826 (937)
+.+...|..-+.--.+.| ...++. --.-.|.+||++ .|+|||++.|..- |
T Consensus 30 P~d~~~L~~rI~~S~~sFa~~~~~~-------------------~~~~~YlfVLED~~tg~vvGts~I~a~vG~~~PfY~ 90 (342)
T PF04958_consen 30 PPDREALAERIERSERSFAGRDVDF-------------------PGDEGYLFVLEDTETGEVVGTSAIEAAVGLDEPFYS 90 (342)
T ss_dssp -S-HHHHHHHHHHHHHHHH-TT-----------------------S--EEEEEEEETTT--EEEEEEEESSTTSSS---E
T ss_pred CCCHHHHHHHHHHHHHHhhccccCC-------------------CCccceEEEEEecCCCcEEEEEeEEeccCCCCCcEE
Confidence 556666766666666677 233221 012269999995 5999999965321 1
Q ss_pred ----------------------------CeeEEEeeeEeeccccCCChhHHHHHH----HHHHhhhcCccEEEec----C
Q 002312 827 ----------------------------QEVAELPLVATSKINHGKGYFQLLFAC----IEKLLSFLRVKSIVLP----A 870 (937)
Q Consensus 827 ----------------------------~~vAEiplVAT~~~yRgqG~gr~L~~~----IE~~l~~lgV~~LvLp----A 870 (937)
++..||--+-++++||+-|.|++|-.+ |-+. ++.=-++++.- .
T Consensus 91 yr~~~~vh~S~~L~v~~~~~~L~L~~d~tG~sEl~tLfL~p~~R~~~~G~lLSr~RfLFiA~~-~~rF~~~viAElrG~~ 169 (342)
T PF04958_consen 91 YRVSTLVHASRELGVRNRHETLTLSNDYTGCSELCTLFLDPDYRGGGNGRLLSRSRFLFIAQH-RERFADRVIAELRGVS 169 (342)
T ss_dssp EEEEEEEEEETTTTEEEEEEEEEEE-TTTTSEEEEEEEE-GGGTTSHHHHHHHHHHHHHHHH--GGGS-SEEEEE--B--
T ss_pred EEcCceeEcCcccCCccceeeEeeecCCCCCeeeEEEEECHHHcCCchHHHHHHHHHHHHHhC-hhhcchheeeeccCCc
Confidence 467889999999999999999887543 2111 11112333321 1
Q ss_pred hh-hhHHHHHhccCcE
Q 002312 871 AE-EAESIWTDKFGFK 885 (937)
Q Consensus 871 ~~-ea~~~w~~kfGF~ 885 (937)
.+ --.|||.. +|=+
T Consensus 170 De~G~SPFWda-lG~~ 184 (342)
T PF04958_consen 170 DEDGRSPFWDA-LGRH 184 (342)
T ss_dssp -TT---HHHHH-TGGG
T ss_pred CCCCCCchHHH-hhcc
Confidence 22 35789999 6643
No 160
>cd00162 RING RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H)
Probab=45.72 E-value=6.4 Score=29.90 Aligned_cols=30 Identities=20% Similarity=0.506 Sum_probs=20.4
Q ss_pred ecccCCCcccccccCCCCCCC-CCCcccccccc
Q 002312 571 LPCDGCPRAFHKECASLSSIP-QGDWYCKYCQN 602 (937)
Q Consensus 571 l~CDgCp~afH~~CL~L~~vP-eG~W~Cp~C~~ 602 (937)
+.-..|.+.||..|+. .+- .+...||.|+.
T Consensus 13 ~~~~~C~H~~c~~C~~--~~~~~~~~~Cp~C~~ 43 (45)
T cd00162 13 VVLLPCGHVFCRSCID--KWLKSGKNTCPLCRT 43 (45)
T ss_pred eEecCCCChhcHHHHH--HHHHhCcCCCCCCCC
Confidence 3344588999999995 111 14678999974
No 161
>PLN03239 histone acetyltransferase; Provisional
Probab=45.68 E-value=29 Score=40.05 Aligned_cols=32 Identities=25% Similarity=0.218 Sum_probs=25.1
Q ss_pred EEeeeEeeccccCCChhHHHHHHHHHHhhhcC
Q 002312 831 ELPLVATSKINHGKGYFQLLFACIEKLLSFLR 862 (937)
Q Consensus 831 EiplVAT~~~yRgqG~gr~L~~~IE~~l~~lg 862 (937)
.|--|-|.|.||++|||+.|++.-=++.+.-|
T Consensus 215 NLaCIltLPpyQrkGyG~lLI~fSYeLSr~Eg 246 (351)
T PLN03239 215 NLACILTFPAHQRKGYGRFLIAFSYELSKKEE 246 (351)
T ss_pred ceEEEEecChhhhcchhhhhHhhhhHhhhhcC
Confidence 57788999999999999999986555544433
No 162
>KOG2747 consensus Histone acetyltransferase (MYST family) [Chromatin structure and dynamics]
Probab=45.52 E-value=19 Score=42.16 Aligned_cols=75 Identities=21% Similarity=0.199 Sum_probs=43.9
Q ss_pred HHHHHHHHHhhhhcCCCcccCCCCCCccccccccccCCCceecceEEEEEeeCCeEEEEEEEEEeCC---eeEEEeeeEe
Q 002312 761 RLLLSQAVAIFHDCFDPIVDSISGRDLIPSMVYGRNLRGQEFGGMYCAILTVNSSVVSAGILRVFGQ---EVAELPLVAT 837 (937)
Q Consensus 761 ~~~La~AL~If~EcF~Pivd~~TgrDLIp~MVy~r~~~~~~f~GfY~~VL~~~~~vVsaA~lri~g~---~vAEiplVAT 837 (937)
+....+-|=.|-..| +|++| +| .|...|.=+||...|..= ++-++--.. +--.|--|=|
T Consensus 207 ~k~YCQnLCLlaKLF---LdhKT--------LY------yDvdpFlFYVlte~d~~G-~VGYFSKEK~s~~~yNlaCILt 268 (396)
T KOG2747|consen 207 QKLYCQNLCLLAKLF---LDHKT--------LY------YDVDPFLFYVLTECDSYG-CVGYFSKEKESSENYNLACILT 268 (396)
T ss_pred hhHHHHHHHHHHHHH---hcCce--------eE------EeccceEEEEEEecCCcc-eeeeeccccccccccceeeeee
Confidence 355677777888888 34432 22 233444444455433321 222222122 2333778889
Q ss_pred eccccCCChhHHHHHH
Q 002312 838 SKINHGKGYFQLLFAC 853 (937)
Q Consensus 838 ~~~yRgqG~gr~L~~~ 853 (937)
.|.||++|||+.|++.
T Consensus 269 LPpyQRkGYGklLIdF 284 (396)
T KOG2747|consen 269 LPPYQRKGYGKLLIDF 284 (396)
T ss_pred cChhhhcccchhhhhh
Confidence 9999999999999874
No 163
>TIGR03244 arg_catab_AstA arginine N-succinyltransferase. In many bacteria, the arginine succinyltransferase (ast) pathway operon consists of five genes, including this protein, arginine N-succinyltransferase (EC 2.3.1.109). In a few species, such as Pseudomonas aeruginosa, the member of this family is encoded adjacent to a paralog, and the two polypeptides form a heterodimeric enzyme, active on both arginine and ornithine. In such species, this polypeptide may be treated as the beta subunit of an enzyme that may be named either arginine N-succinyltransferase (AST) or arginine and orthithine N-succinyltransferase (AOST).
Probab=45.18 E-value=37 Score=39.17 Aligned_cols=49 Identities=18% Similarity=0.119 Sum_probs=38.5
Q ss_pred ceEEEEEee--CCeEEEEEEEEEe-C-----------------------------------CeeEEEeeeEeeccccCCC
Q 002312 804 GMYCAILTV--NSSVVSAGILRVF-G-----------------------------------QEVAELPLVATSKINHGKG 845 (937)
Q Consensus 804 GfY~~VL~~--~~~vVsaA~lri~-g-----------------------------------~~vAEiplVAT~~~yRgqG 845 (937)
.-|.+||+. .|+|||++.|... | ++..||--+-.+++||+-|
T Consensus 54 ~~YlFVLEDt~tg~vvGts~I~a~vG~~~PfY~yr~~~~vhaS~~L~v~~~~~~L~l~nd~tG~SElctLfL~p~~R~~~ 133 (336)
T TIGR03244 54 QGYLFVLEDTETGTVAGVSAIEAAVGLEEPFYNYRVGTVVHASKELGIYKALETLFLSNDLTGYSELCTLFLDPDYRKGG 133 (336)
T ss_pred ccEEEEEEeCCCCeEEEEEeEEecccCCCCCEEEEcCceeecCcccCCceeeeeEEeeccCCCCeeeEEEEECHHHcCCc
Confidence 478999996 5899999865431 1 4678888899999999999
Q ss_pred hhHHHHH
Q 002312 846 YFQLLFA 852 (937)
Q Consensus 846 ~gr~L~~ 852 (937)
.|+.|-.
T Consensus 134 ~G~LLSr 140 (336)
T TIGR03244 134 NGRLLSK 140 (336)
T ss_pred chhhHHH
Confidence 9987644
No 164
>PLN02400 cellulose synthase
Probab=44.69 E-value=19 Score=46.89 Aligned_cols=60 Identities=23% Similarity=0.624 Sum_probs=47.1
Q ss_pred cCCcccccccCccCCcCcccccCCCCceecccCCCcccccccCCCCCCCCCCcccccccccccccc
Q 002312 543 NGLGIICHCCNSEVSPSQFEAHADGGNLLPCDGCPRAFHKECASLSSIPQGDWYCKYCQNMFERKR 608 (937)
Q Consensus 543 ~~~~i~C~~C~~eiSpS~FE~HAdgG~Ll~CDgCp~afH~~CL~L~~vPeG~W~Cp~C~~~~~~ek 608 (937)
.-++.+|.+|+..+-.. ++|.-.+-|..|.-...-.|+.- +..+|.=.||.|+..+.+.+
T Consensus 33 ~~~gqiCqICGD~VG~t-----~dGe~FVAC~eCaFPVCRpCYEY-ERkeGnq~CPQCkTrYkR~K 92 (1085)
T PLN02400 33 NLNGQICQICGDDVGVT-----ETGDVFVACNECAFPVCRPCYEY-ERKDGTQCCPQCKTRYRRHK 92 (1085)
T ss_pred ccCCceeeecccccCcC-----CCCCEEEEEccCCCccccchhhe-ecccCCccCcccCCcccccc
Confidence 35678999999876443 37777899999988888889954 56788999999998776543
No 165
>TIGR03243 arg_catab_AOST arginine and ornithine succinyltransferase subunits. In many bacteria, the sole member of this protein family is arginine N-succinyltransferase (EC 2.3.1.109), the AstA protein of the arginine succinyltransferase (ast) pathway. However, in Pseudomonas aeruginosa and several other species, a tandem gene pair encodes alpha and beta subunits of a heterodimer that is designated arginine and ornithine succinyltransferase (AOST).
Probab=43.55 E-value=38 Score=39.00 Aligned_cols=49 Identities=18% Similarity=0.120 Sum_probs=38.6
Q ss_pred ceEEEEEee--CCeEEEEEEEEEe-C-----------------------------------CeeEEEeeeEeeccccCCC
Q 002312 804 GMYCAILTV--NSSVVSAGILRVF-G-----------------------------------QEVAELPLVATSKINHGKG 845 (937)
Q Consensus 804 GfY~~VL~~--~~~vVsaA~lri~-g-----------------------------------~~vAEiplVAT~~~yRgqG 845 (937)
..|.+||++ .|+|||++.|... | ++..||--+-.+++||+-|
T Consensus 54 ~~YlFVLED~~tg~vvGts~I~a~vG~~~PfY~yrv~~~vhaS~~L~v~~~~~~L~l~nd~tG~sElctLfL~p~~R~~~ 133 (335)
T TIGR03243 54 EGYLFVLEDTETGTVAGVSAIEAAVGLDEPFYNYRVGTLVHASRELGVYNKIPTLTLSNDLTGSSELCTLFLDPDYRKGG 133 (335)
T ss_pred ccEEEEEEeCCCCeEEEEEeEEecccCCCCCEEEEcCceeecCcccCCccceeeEEeeccCCCCeeeEEEEECHHHcCCC
Confidence 479999995 6899999865431 1 4678888999999999999
Q ss_pred hhHHHHH
Q 002312 846 YFQLLFA 852 (937)
Q Consensus 846 ~gr~L~~ 852 (937)
.|+.|-.
T Consensus 134 ~G~LLSr 140 (335)
T TIGR03243 134 NGRLLSR 140 (335)
T ss_pred chhhHHH
Confidence 9987643
No 166
>COG3916 LasI N-acyl-L-homoserine lactone synthetase [Signal transduction mechanisms / Secondary metabolites biosynthesis, transport, and catabolism]
Probab=43.01 E-value=1.2e+02 Score=33.01 Aligned_cols=82 Identities=22% Similarity=0.147 Sum_probs=61.8
Q ss_pred cceEEEEEeeCCeEEEEEEEEEeC---------------------CeeEEEeeeEeec--cccCCCh----hHHHHHHHH
Q 002312 803 GGMYCAILTVNSSVVSAGILRVFG---------------------QEVAELPLVATSK--INHGKGY----FQLLFACIE 855 (937)
Q Consensus 803 ~GfY~~VL~~~~~vVsaA~lri~g---------------------~~vAEiplVAT~~--~yRgqG~----gr~L~~~IE 855 (937)
.-.|.+.+..+|+|+|+++|=... ++++|.-++|++. .-+++|= ...||..+.
T Consensus 51 ~t~Yll~~~~~g~I~G~~RlLptt~P~mL~~vF~~Ll~~~~~P~~p~vwEsSRF~vd~~~a~~~~g~~~~a~~el~~g~i 130 (209)
T COG3916 51 DTVYLLALTSDGRIVGCVRLLPTTGPYMLTDVFPALLEGGPPPSSPGVWESSRFAVDKPSARRAAGGVSPAAYELFAGMI 130 (209)
T ss_pred CceEEEEEcCCCcEEEEEEeccCCCcchhhhhhHHHhcCCCCCCCCCeEEEeeeeeccccchhhcCCccHHHHHHHHHHH
Confidence 347888888899999999874321 4799999999997 5555553 567999999
Q ss_pred HHhhhcCccEEEecChhhhHHHHHhccCcE
Q 002312 856 KLLSFLRVKSIVLPAAEEAESIWTDKFGFK 885 (937)
Q Consensus 856 ~~l~~lgV~~LvLpA~~ea~~~w~~kfGF~ 885 (937)
+.+...|+.+|+.=...-.+.+... .||.
T Consensus 131 e~a~~~G~~~IvtVt~~~meril~r-~Gw~ 159 (209)
T COG3916 131 EYALARGITGIVTVTDTGMERILRR-AGWP 159 (209)
T ss_pred HHHHHcCCceEEEEEchHHHHHHHH-cCCC
Confidence 9999999999996665545555444 5553
No 167
>PRK10456 arginine succinyltransferase; Provisional
Probab=42.78 E-value=37 Score=39.19 Aligned_cols=49 Identities=20% Similarity=0.109 Sum_probs=38.3
Q ss_pred ceEEEEEee--CCeEEEEEEEEEe-C-----------------------------------CeeEEEeeeEeeccccCCC
Q 002312 804 GMYCAILTV--NSSVVSAGILRVF-G-----------------------------------QEVAELPLVATSKINHGKG 845 (937)
Q Consensus 804 GfY~~VL~~--~~~vVsaA~lri~-g-----------------------------------~~vAEiplVAT~~~yRgqG 845 (937)
..|.+||+. .|+|||++.|... | ++..||--+-.+++||+-|
T Consensus 56 ~~YlFVLED~~tg~vvGts~I~a~vG~~~PfY~yr~~~~vhaS~~L~v~~~~~~L~l~nd~tG~sElctLfl~p~~R~~~ 135 (344)
T PRK10456 56 QGYVFVLEDSETGTVAGICAIEVAVGLNDPWYNYRVGTLVHASKELNVYNALPTLFLSNDHTGSSELCTLFLDPDWRKEG 135 (344)
T ss_pred ccEEEEEEeCCCCcEEEEEeEEecccCCCCCEEEEcCceeecCcccCCceeeeeEEeeccCCCCceeEEEEECHHHcCCC
Confidence 478999995 6899999865431 1 4678888889999999999
Q ss_pred hhHHHHH
Q 002312 846 YFQLLFA 852 (937)
Q Consensus 846 ~gr~L~~ 852 (937)
.|++|-.
T Consensus 136 ~G~LLSr 142 (344)
T PRK10456 136 NGYLLSK 142 (344)
T ss_pred chhHHHH
Confidence 9977643
No 168
>PRK14852 hypothetical protein; Provisional
Probab=42.13 E-value=75 Score=41.53 Aligned_cols=83 Identities=18% Similarity=0.166 Sum_probs=64.0
Q ss_pred EEEEeeCCeEEEEEEEEEe----------------------CCeeEEEeeeEeeccccCCChhHHHHHHHHHHhhhcCcc
Q 002312 807 CAILTVNSSVVSAGILRVF----------------------GQEVAELPLVATSKINHGKGYFQLLFACIEKLLSFLRVK 864 (937)
Q Consensus 807 ~~VL~~~~~vVsaA~lri~----------------------g~~vAEiplVAT~~~yRgqG~gr~L~~~IE~~l~~lgV~ 864 (937)
++++-..+++|++.++.+- |..++|+-.+|+++..|.+=+--.|+..+-..+...++.
T Consensus 77 ~~i~k~~~~~l~T~t~~~ds~~~Gl~~D~lf~~eLd~lr~~Gr~v~EvtrLa~d~~~~~~~l~~~l~~~~~~y~~~~~~d 156 (989)
T PRK14852 77 VFIFKSYHDVLCTLTHIPDSGLFGLPMDTLYKPEVDALRAQGRNVVEVGALATQYSRRWTNLMVFLAKAMFQYSMMSEVD 156 (989)
T ss_pred EEEeccCCcEEEEEEEecCCcccCcCHHHHHHHHHHHHHHcCCeEEeeehheechhhcccchhHHHHHHHHHHHHHcCCC
Confidence 3444444666776666543 246999999999887777666556777666666678999
Q ss_pred EEEecChhhhHHHHHhccCcEEcCH
Q 002312 865 SIVLPAAEEAESIWTDKFGFKKIDP 889 (937)
Q Consensus 865 ~LvLpA~~ea~~~w~~kfGF~~i~~ 889 (937)
.+++---+.=..||++-|||+.+++
T Consensus 157 d~~i~VnPkH~~FY~r~l~f~~ig~ 181 (989)
T PRK14852 157 DILVTVNPKHVKFYTDIFLFKPFGE 181 (989)
T ss_pred eEEEEECcchHHHHHHHhCCccccc
Confidence 9999999999999999999999986
No 169
>PLN02638 cellulose synthase A (UDP-forming), catalytic subunit
Probab=41.73 E-value=17 Score=47.25 Aligned_cols=59 Identities=25% Similarity=0.690 Sum_probs=46.7
Q ss_pred cCCcccccccCccCCcCcccccCCCCceecccCCCcccccccCCCCCCCCCCccccccccccccc
Q 002312 543 NGLGIICHCCNSEVSPSQFEAHADGGNLLPCDGCPRAFHKECASLSSIPQGDWYCKYCQNMFERK 607 (937)
Q Consensus 543 ~~~~i~C~~C~~eiSpS~FE~HAdgG~Ll~CDgCp~afH~~CL~L~~vPeG~W~Cp~C~~~~~~e 607 (937)
.-++.+|.+|+..+-.. ++|.-.+-|..|.-..+..|+.- +..+|.=.||.|+..+.+.
T Consensus 14 ~~~~qiCqICGD~vg~~-----~~Ge~FVAC~eC~FPVCrpCYEY-Er~eG~q~CPqCktrYkr~ 72 (1079)
T PLN02638 14 HGGGQVCQICGDNVGKT-----VDGEPFVACDVCAFPVCRPCYEY-ERKDGNQSCPQCKTKYKRH 72 (1079)
T ss_pred ccCCceeeecccccCcC-----CCCCEEEEeccCCCccccchhhh-hhhcCCccCCccCCchhhh
Confidence 34678999999876543 37777899999998888899953 5678899999999877643
No 170
>KOG2779 consensus N-myristoyl transferase [Lipid transport and metabolism]
Probab=41.50 E-value=85 Score=36.56 Aligned_cols=127 Identities=16% Similarity=0.245 Sum_probs=86.3
Q ss_pred CcceeEccCCCCChhhHHHHHHHHHhhhhcCCCcccCCCCCCcccccccccc-----CCCceecceEEEEEeeC--CeEE
Q 002312 745 DVRWRLLSGKAATPETRLLLSQAVAIFHDCFDPIVDSISGRDLIPSMVYGRN-----LRGQEFGGMYCAILTVN--SSVV 817 (937)
Q Consensus 745 dikWqLLsgk~~s~e~~~~La~AL~If~EcF~Pivd~~TgrDLIp~MVy~r~-----~~~~~f~GfY~~VL~~~--~~vV 817 (937)
.+.|..+- ..+...|.+-.+.+.|-+.--. |.....-|..+ +..-++.-=|.+.+... .++|
T Consensus 80 gf~W~tld-----v~~~~~l~el~~lL~enyVEd~------~~m~rf~Ys~eFl~Wal~~pg~~~~WHiGVRv~~s~kLV 148 (421)
T KOG2779|consen 80 GFRWETLD-----VSDFKDLEELYNLLNENYVEDD------DSMFRFDYSPEFLKWALQPPGWKKEWHIGVRVKSSKKLV 148 (421)
T ss_pred CceeeccC-----CccHhHHHHHHhhcccCCCCcc------ccchhhhccHHHHHhhhcCCCCccceEEEEEEecCCceE
Confidence 57887653 2234456777777778763222 33333334433 23444555666666654 3666
Q ss_pred EE-----EEEEEeCC--eeEEEeeeEeeccccCCChhHHHHHHHHHHhhhcCcc------EEEecChhhhHHHHHhcc
Q 002312 818 SA-----GILRVFGQ--EVAELPLVATSKINHGKGYFQLLFACIEKLLSFLRVK------SIVLPAAEEAESIWTDKF 882 (937)
Q Consensus 818 sa-----A~lri~g~--~vAEiplVAT~~~yRgqG~gr~L~~~IE~~l~~lgV~------~LvLpA~~ea~~~w~~kf 882 (937)
+- ++|||.+. ..+||-++.|+...|++++.=.|+.+|-+...--||- -++||+-...-.-|.+.+
T Consensus 149 aFIsaiP~~irvrdk~vk~veINFLCVHKkLRSKRlaPvLIrEITRRvnl~gIfqA~yTaGvvLp~PVstcRY~HRsL 226 (421)
T KOG2779|consen 149 AFISAIPATIRVRDKVVKMVEINFLCVHKKLRSKRLAPVLIREITRRVNLEGIFQAAYTAGVVLPKPVSTCRYWHRSL 226 (421)
T ss_pred EEEeccccEEEEccceeeeeeEEEEEEehhhhccccccHHHHHHHHHhhhhhhhhHhhhcceeeccccchhhhhhccC
Confidence 63 57888886 6899999999999999999999999998877666654 477888777777787744
No 171
>KOG1246 consensus DNA-binding protein jumonji/RBP2/SMCY, contains JmjC domain [General function prediction only]
Probab=41.39 E-value=20 Score=46.26 Aligned_cols=48 Identities=31% Similarity=0.877 Sum_probs=38.4
Q ss_pred ccccccCCCCCCCCCCCCceeeCCCCCCcCCCCCCCcCcCCcccCCCCCcceecCCccch
Q 002312 648 GCLLCRGCDFSKSGFGPRTILLCDQCEREFHVGCLKKHKMADLRELPKGKWFCCMDCSRI 707 (937)
Q Consensus 648 ~C~vC~~~df~~sgf~~~tLL~CDqCdr~yHv~CL~p~~~~~L~evP~g~WfCc~~C~~I 707 (937)
.|..|.+.. .+..+ .|+.|...||..|+.+ +++.+|.+.|.| ..|...
T Consensus 157 ~~~~~~k~~------~~~~~-~~~~~~~~~~~~~~~~----~~~~~~~~~~~~-~~~~~~ 204 (904)
T KOG1246|consen 157 QCNTCSKGK------EEKLL-LCDSCDDSYHTYCLRP----PLTRVPDGDWRC-PKCIPT 204 (904)
T ss_pred hhhccccCC------Cccce-ecccccCcccccccCC----CCCcCCcCcccC-Cccccc
Confidence 488887643 23334 9999999999999987 788999999997 778655
No 172
>PF13901 DUF4206: Domain of unknown function (DUF4206)
Probab=41.23 E-value=22 Score=37.83 Aligned_cols=34 Identities=29% Similarity=0.709 Sum_probs=26.4
Q ss_pred cccccCCCCCCCCCCCCceeeCCCCCCcCCCCCCC
Q 002312 649 CLLCRGCDFSKSGFGPRTILLCDQCEREFHVGCLK 683 (937)
Q Consensus 649 C~vC~~~df~~sgf~~~tLL~CDqCdr~yHv~CL~ 683 (937)
|.+|...+ -.=.|+.+....|..|...||..|..
T Consensus 155 Ce~C~~~~-~IfPF~~~~~~~C~~C~~v~H~~C~~ 188 (202)
T PF13901_consen 155 CEICNSDD-IIFPFQIDTTVRCPKCKSVFHKSCFR 188 (202)
T ss_pred CccCCCCC-CCCCCCCCCeeeCCcCccccchhhcC
Confidence 77887543 22346667889999999999999996
No 173
>PF13832 zf-HC5HC2H_2: PHD-zinc-finger like domain
Probab=40.85 E-value=14 Score=34.93 Aligned_cols=31 Identities=35% Similarity=0.952 Sum_probs=26.0
Q ss_pred CcccccccCccCCcCcccccCCCCceecccC--CCcccccccCC
Q 002312 545 LGIICHCCNSEVSPSQFEAHADGGNLLPCDG--CPRAFHKECAS 586 (937)
Q Consensus 545 ~~i~C~~C~~eiSpS~FE~HAdgG~Ll~CDg--Cp~afH~~CL~ 586 (937)
....|.+|++ ..|-.+.|.. |...||..|..
T Consensus 54 ~~~~C~iC~~-----------~~G~~i~C~~~~C~~~fH~~CA~ 86 (110)
T PF13832_consen 54 FKLKCSICGK-----------SGGACIKCSHPGCSTAFHPTCAR 86 (110)
T ss_pred cCCcCcCCCC-----------CCceeEEcCCCCCCcCCCHHHHH
Confidence 3568999996 4688999986 99999999983
No 174
>TIGR03245 arg_AOST_alph arginine/ornithine succinyltransferase, alpha subunit. In some bacteria, including Pseudomonas aeruginosa, the astB gene (arginine N-succinyltransferase) is replaced by tandem paralogs that form a heterodimer. This heterodimer from P. aeruginosa is characterized as arginine and ornithine N-2 succinyltransferase (AOST). Members of this protein family represent the less widespread paralog, designated AruI, or arginine/ornithine succinyltransferase, alpha subunit.
Probab=40.72 E-value=51 Score=38.01 Aligned_cols=49 Identities=12% Similarity=0.021 Sum_probs=38.5
Q ss_pred ceEEEEEee--CCeEEEEEEEEEe-C-----------------------------------CeeEEEeeeEeeccccCCC
Q 002312 804 GMYCAILTV--NSSVVSAGILRVF-G-----------------------------------QEVAELPLVATSKINHGKG 845 (937)
Q Consensus 804 GfY~~VL~~--~~~vVsaA~lri~-g-----------------------------------~~vAEiplVAT~~~yRgqG 845 (937)
..|.+||++ .|+|||++.|... | ++..||--+-.+++||+-|
T Consensus 55 ~~YlFVLEDt~tg~vvGts~I~a~vG~~~PfY~yr~~~~vhaS~~L~v~~~~~~L~l~nd~tG~sElctLfL~p~~R~~~ 134 (336)
T TIGR03245 55 ERYLFVLEDTETGKLLGTSSIVASAGYGEPFYSYRNDTLIHASRELKVNNKIHVLYMCHELTGSSLLCSFYVDPRLRKTE 134 (336)
T ss_pred ccEEEEEEeCCCCcEEEEEeEEecccCCCCCEEEEcCceeecCcccCCccceeeEEeeccCCCCeeeEEEEECHHHcCCC
Confidence 478999995 6899999866431 1 4678888999999999999
Q ss_pred hhHHHHH
Q 002312 846 YFQLLFA 852 (937)
Q Consensus 846 ~gr~L~~ 852 (937)
.|++|-.
T Consensus 135 ~G~lLSr 141 (336)
T TIGR03245 135 AAELLSR 141 (336)
T ss_pred chhHHHH
Confidence 9977643
No 175
>PF02591 DUF164: Putative zinc ribbon domain; InterPro: IPR003743 This entry describes proteins of unknown function.
Probab=40.41 E-value=9.8 Score=32.24 Aligned_cols=34 Identities=26% Similarity=0.681 Sum_probs=28.0
Q ss_pred CcccccccCccCCcCcccccCCCCceecccCCCc
Q 002312 545 LGIICHCCNSEVSPSQFEAHADGGNLLPCDGCPR 578 (937)
Q Consensus 545 ~~i~C~~C~~eiSpS~FE~HAdgG~Ll~CDgCp~ 578 (937)
++..|.-|+..+++..+..-..+.+++.|+.|++
T Consensus 21 ~~~~C~gC~~~l~~~~~~~i~~~~~i~~Cp~CgR 54 (56)
T PF02591_consen 21 EGGTCSGCHMELPPQELNEIRKGDEIVFCPNCGR 54 (56)
T ss_pred eCCccCCCCEEcCHHHHHHHHcCCCeEECcCCCc
Confidence 4458999999999887766666689999999986
No 176
>PLN02436 cellulose synthase A
Probab=40.19 E-value=22 Score=46.26 Aligned_cols=60 Identities=22% Similarity=0.610 Sum_probs=46.8
Q ss_pred cCCcccccccCccCCcCcccccCCCCceecccCCCcccccccCCCCCCCCCCcccccccccccccc
Q 002312 543 NGLGIICHCCNSEVSPSQFEAHADGGNLLPCDGCPRAFHKECASLSSIPQGDWYCKYCQNMFERKR 608 (937)
Q Consensus 543 ~~~~i~C~~C~~eiSpS~FE~HAdgG~Ll~CDgCp~afH~~CL~L~~vPeG~W~Cp~C~~~~~~ek 608 (937)
.-++.+|.+|+..+-.. +||.-.+-|..|.-.....|+.- +..+|.-.||.|+..+.+.+
T Consensus 33 ~~~~~iCqICGD~Vg~t-----~dGe~FVACn~C~fpvCr~Cyey-er~eg~~~Cpqckt~Y~r~k 92 (1094)
T PLN02436 33 ELSGQTCQICGDEIELT-----VDGEPFVACNECAFPVCRPCYEY-ERREGNQACPQCKTRYKRIK 92 (1094)
T ss_pred ccCCccccccccccCcC-----CCCCEEEeeccCCCccccchhhh-hhhcCCccCcccCCchhhcc
Confidence 34677999999876443 37777899999998888899953 56778999999998765433
No 177
>PLN00104 MYST -like histone acetyltransferase; Provisional
Probab=40.03 E-value=31 Score=41.13 Aligned_cols=79 Identities=18% Similarity=0.132 Sum_probs=44.4
Q ss_pred HHHHHHHHhhhhcCCCcccCCCCCCccccccccccCCCceecceEEEEEe-e---CCeEEEEEEEEEeCCeeEEEeeeEe
Q 002312 762 LLLSQAVAIFHDCFDPIVDSISGRDLIPSMVYGRNLRGQEFGGMYCAILT-V---NSSVVSAGILRVFGQEVAELPLVAT 837 (937)
Q Consensus 762 ~~La~AL~If~EcF~Pivd~~TgrDLIp~MVy~r~~~~~~f~GfY~~VL~-~---~~~vVsaA~lri~g~~vAEiplVAT 837 (937)
....+-|-.|-..| +|++|=- .|...|.-+||. . +-.+||-=+=--.-.+--.|--|-|
T Consensus 252 ~~yCqnLcLlaKLF---LdhKtly--------------ydV~~FlFYvl~e~d~~g~h~vGyFSKEk~s~~~~NLaCIlt 314 (450)
T PLN00104 252 KVYCQNLCYLAKLF---LDHKTLY--------------YDVDLFLFYVLCECDDRGCHMVGYFSKEKHSEEDYNLACILT 314 (450)
T ss_pred hhHHHHHHHHHHHh---hcCccee--------------ccccceEEEEEEEecCCCcEEEEEecccccCcCCCceEEEEe
Confidence 45577777888888 4444321 122333333333 2 2244443221111112235778899
Q ss_pred eccccCCChhHHHHHHHHHH
Q 002312 838 SKINHGKGYFQLLFACIEKL 857 (937)
Q Consensus 838 ~~~yRgqG~gr~L~~~IE~~ 857 (937)
.|.||++|||+.|++.-=++
T Consensus 315 lP~yQrkGyG~~LI~~SYeL 334 (450)
T PLN00104 315 LPPYQRKGYGKFLIAFSYEL 334 (450)
T ss_pred cchhhhcchhheehhheehh
Confidence 99999999999998754433
No 178
>COG0143 MetG Methionyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=36.73 E-value=40 Score=41.39 Aligned_cols=30 Identities=27% Similarity=0.486 Sum_probs=21.3
Q ss_pred CccccccCCCCCCCCCCCCceeeCCCCCCcCCCCCCCc
Q 002312 647 SGCLLCRGCDFSKSGFGPRTILLCDQCEREFHVGCLKK 684 (937)
Q Consensus 647 ~~C~vC~~~df~~sgf~~~tLL~CDqCdr~yHv~CL~p 684 (937)
+.|..|+..+ ..-=+||.|++.|+..+|..
T Consensus 143 g~cp~cg~~~--------arGD~Ce~Cg~~~~P~~l~~ 172 (558)
T COG0143 143 GTCPKCGGED--------ARGDQCENCGRTLDPTELIN 172 (558)
T ss_pred ccCCCcCccc--------cCcchhhhccCcCCchhcCC
Confidence 4588888432 11127999999999999743
No 179
>PLN02189 cellulose synthase
Probab=36.23 E-value=26 Score=45.52 Aligned_cols=58 Identities=22% Similarity=0.592 Sum_probs=45.7
Q ss_pred CCcccccccCccCCcCcccccCCCCceecccCCCcccccccCCCCCCCCCCccccccccccccc
Q 002312 544 GLGIICHCCNSEVSPSQFEAHADGGNLLPCDGCPRAFHKECASLSSIPQGDWYCKYCQNMFERK 607 (937)
Q Consensus 544 ~~~i~C~~C~~eiSpS~FE~HAdgG~Ll~CDgCp~afH~~CL~L~~vPeG~W~Cp~C~~~~~~e 607 (937)
-++.+|.+|+..+... ++|.-.+-|..|.-..+..|+.- +..+|.-.||.|+..+.+.
T Consensus 32 ~~~~~C~iCgd~vg~~-----~~g~~fvaC~~C~fpvCr~Cyey-er~eg~q~CpqCkt~Y~r~ 89 (1040)
T PLN02189 32 LDGQVCEICGDEIGLT-----VDGDLFVACNECGFPVCRPCYEY-ERREGTQNCPQCKTRYKRL 89 (1040)
T ss_pred ccCccccccccccCcC-----CCCCEEEeeccCCCccccchhhh-hhhcCCccCcccCCchhhc
Confidence 4567999999876543 26777799999988888899953 5678899999999876543
No 180
>KOG2036 consensus Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only]
Probab=35.98 E-value=30 Score=43.26 Aligned_cols=29 Identities=14% Similarity=0.123 Sum_probs=24.6
Q ss_pred EEEeeeEeeccccCCChhHHHHHHHHHHh
Q 002312 830 AELPLVATSKINHGKGYFQLLFACIEKLL 858 (937)
Q Consensus 830 AEiplVAT~~~yRgqG~gr~L~~~IE~~l 858 (937)
|.|-+|||+|+|++-|||.+-++-+.+..
T Consensus 615 aRIVRIAvhP~y~~MGYGsrAvqLL~~y~ 643 (1011)
T KOG2036|consen 615 ARIVRIAVHPEYQKMGYGSRAVQLLTDYF 643 (1011)
T ss_pred ceEEEEEeccchhccCccHHHHHHHHHHH
Confidence 66788999999999999988887776654
No 181
>PRK01305 arginyl-tRNA-protein transferase; Provisional
Probab=35.79 E-value=1.8e+02 Score=32.17 Aligned_cols=56 Identities=7% Similarity=0.037 Sum_probs=46.8
Q ss_pred eeCCeEEEEEEEEEeCCeeEEEeeeEeeccccCCChhHHHHHHHHHHhhhcCccEEE
Q 002312 811 TVNSSVVSAGILRVFGQEVAELPLVATSKINHGKGYFQLLFACIEKLLSFLRVKSIV 867 (937)
Q Consensus 811 ~~~~~vVsaA~lri~g~~vAEiplVAT~~~yRgqG~gr~L~~~IE~~l~~lgV~~Lv 867 (937)
..+|++||+|.+.+..+.+.-|-.+ =+|+|-..++|...+..-.++++.+|.+.+-
T Consensus 150 ~~~g~LiaVav~D~l~d~lSAVY~F-yDPd~~~~SLG~~~iL~qI~~ak~~gl~y~Y 205 (240)
T PRK01305 150 RGDGKLVAVAVTDVLDDGLSAVYTF-YDPDEEHRSLGTFAILWQIELAKRLGLPYVY 205 (240)
T ss_pred EeCCeEEEEEEEeccCCceeeEEEe-eCCCccccCCHHHHHHHHHHHHHHcCCCeEe
Confidence 4789999999999888776655333 4888888889998888888999999999988
No 182
>KOG1493 consensus Anaphase-promoting complex (APC), subunit 11 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=35.79 E-value=5.7 Score=36.44 Aligned_cols=59 Identities=20% Similarity=0.404 Sum_probs=34.1
Q ss_pred cccccccCccCCcCc--ccccCCCCceecccCCCcccccccCC-CCCCCCCCccccccccccc
Q 002312 546 GIICHCCNSEVSPSQ--FEAHADGGNLLPCDGCPRAFHKECAS-LSSIPQGDWYCKYCQNMFE 605 (937)
Q Consensus 546 ~i~C~~C~~eiSpS~--FE~HAdgG~Ll~CDgCp~afH~~CL~-L~~vPeG~W~Cp~C~~~~~ 605 (937)
+..|++|+..+..+- -..-.|.=.|+.- .|.+.||..|+. .-..|...-.||.|++.++
T Consensus 20 ~e~CGiCRm~Fdg~Cp~Ck~PgDdCPLv~G-~C~h~fh~hCI~~wl~~~tsq~~CPmcRq~~~ 81 (84)
T KOG1493|consen 20 DETCGICRMPFDGCCPDCKLPGDDCPLVWG-YCLHAFHAHCILKWLNTPTSQGQCPMCRQTWQ 81 (84)
T ss_pred CCccceEecccCCcCCCCcCCCCCCccHHH-HHHHHHHHHHHHHHhcCccccccCCcchheeE
Confidence 348999987543210 0000011122221 467889999984 3355666789999998653
No 183
>PF13901 DUF4206: Domain of unknown function (DUF4206)
Probab=35.76 E-value=32 Score=36.62 Aligned_cols=47 Identities=32% Similarity=0.714 Sum_probs=34.5
Q ss_pred cCCcccccccCcc--CCcCcccccCCCCceecccCCCcccccccCCCCCCCCCCcccccccc
Q 002312 543 NGLGIICHCCNSE--VSPSQFEAHADGGNLLPCDGCPRAFHKECASLSSIPQGDWYCKYCQN 602 (937)
Q Consensus 543 ~~~~i~C~~C~~e--iSpS~FE~HAdgG~Ll~CDgCp~afH~~CL~L~~vPeG~W~Cp~C~~ 602 (937)
...|-+|.+|+.. +-|- +-.....|..|...||..|..- -.||.|..
T Consensus 149 ~~kGfiCe~C~~~~~IfPF------~~~~~~~C~~C~~v~H~~C~~~-------~~CpkC~R 197 (202)
T PF13901_consen 149 QQKGFICEICNSDDIIFPF------QIDTTVRCPKCKSVFHKSCFRK-------KSCPKCAR 197 (202)
T ss_pred HhCCCCCccCCCCCCCCCC------CCCCeeeCCcCccccchhhcCC-------CCCCCcHh
Confidence 3457789999853 3343 3467899999999999999951 23999963
No 184
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=35.62 E-value=16 Score=43.27 Aligned_cols=46 Identities=22% Similarity=0.338 Sum_probs=31.9
Q ss_pred CcccccccCccCCcCcccccCCCCceecccCCCcccccccCCCCCCCCCCcccccccc
Q 002312 545 LGIICHCCNSEVSPSQFEAHADGGNLLPCDGCPRAFHKECASLSSIPQGDWYCKYCQN 602 (937)
Q Consensus 545 ~~i~C~~C~~eiSpS~FE~HAdgG~Ll~CDgCp~afH~~CL~L~~vPeG~W~Cp~C~~ 602 (937)
+-..|.+|.+.+.+| -..+.---|.++||-.|+. .|. +-.||-|+.
T Consensus 174 ELPTCpVCLERMD~s--------~~gi~t~~c~Hsfh~~cl~--~w~--~~scpvcR~ 219 (493)
T KOG0804|consen 174 ELPTCPVCLERMDSS--------TTGILTILCNHSFHCSCLM--KWW--DSSCPVCRY 219 (493)
T ss_pred cCCCcchhHhhcCcc--------ccceeeeecccccchHHHh--hcc--cCcChhhhh
Confidence 557799999877654 2334445677999999994 343 467888874
No 185
>PF11793 FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A.
Probab=35.61 E-value=16 Score=32.48 Aligned_cols=35 Identities=26% Similarity=0.682 Sum_probs=13.4
Q ss_pred ccccccCCCCCCCCCCCCceeeCC--CCCCcCCCCCCCcC
Q 002312 648 GCLLCRGCDFSKSGFGPRTILLCD--QCEREFHVGCLKKH 685 (937)
Q Consensus 648 ~C~vC~~~df~~sgf~~~tLL~CD--qCdr~yHv~CL~p~ 685 (937)
.|.||...-. ..+....+.|+ .|.+.||..||...
T Consensus 4 ~C~IC~~~~~---~~~~~p~~~C~n~~C~~~fH~~CL~~w 40 (70)
T PF11793_consen 4 ECGICYSYRL---DDGEIPDVVCPNPSCGKKFHLLCLSEW 40 (70)
T ss_dssp S-SSS--SS----TT-----B--S-TT----B-SGGGHHH
T ss_pred CCCcCCcEec---CCCCcCceEcCCcccCCHHHHHHHHHH
Confidence 3889976421 11234568998 99999999999653
No 186
>KOG0827 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=35.07 E-value=8.8 Score=44.49 Aligned_cols=47 Identities=32% Similarity=0.625 Sum_probs=31.2
Q ss_pred ccccccCccCCcCcccccCCCCceecccCCCcccccccCCCCCCCCCC-c--cccccccc
Q 002312 547 IICHCCNSEVSPSQFEAHADGGNLLPCDGCPRAFHKECASLSSIPQGD-W--YCKYCQNM 603 (937)
Q Consensus 547 i~C~~C~~eiSpS~FE~HAdgG~Ll~CDgCp~afH~~CL~L~~vPeG~-W--~Cp~C~~~ 603 (937)
..|.+|.. +-| ...++..=..|++.||..|+ ..|-+++ | -||.|+-.
T Consensus 5 A~C~Ic~d-~~p-------~~~~l~~i~~cGhifh~~cl--~qwfe~~Ps~R~cpic~ik 54 (465)
T KOG0827|consen 5 AECHICID-GRP-------NDHELGPIGTCGHIFHTTCL--TQWFEGDPSNRGCPICQIK 54 (465)
T ss_pred ceeeEecc-CCc-------cccccccccchhhHHHHHHH--HHHHccCCccCCCCceeec
Confidence 46999942 222 12345555569999999999 5565553 6 69999843
No 187
>KOG1246 consensus DNA-binding protein jumonji/RBP2/SMCY, contains JmjC domain [General function prediction only]
Probab=35.02 E-value=26 Score=45.16 Aligned_cols=49 Identities=33% Similarity=0.815 Sum_probs=38.4
Q ss_pred CcccccccCccCCcCcccccCCCCceecccCCCcccccccCC--CCCCCCCCccccccccc
Q 002312 545 LGIICHCCNSEVSPSQFEAHADGGNLLPCDGCPRAFHKECAS--LSSIPQGDWYCKYCQNM 603 (937)
Q Consensus 545 ~~i~C~~C~~eiSpS~FE~HAdgG~Ll~CDgCp~afH~~CL~--L~~vPeG~W~Cp~C~~~ 603 (937)
+...|..|.+.-. . .++.|++|...||..|.. ++.+++++|.|+.|...
T Consensus 154 ~~~~~~~~~k~~~---------~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (904)
T KOG1246|consen 154 DYPQCNTCSKGKE---------E-KLLLCDSCDDSYHTYCLRPPLTRVPDGDWRCPKCIPT 204 (904)
T ss_pred cchhhhccccCCC---------c-cceecccccCcccccccCCCCCcCCcCcccCCccccc
Confidence 4456888886421 2 344999999999999996 77899999999999754
No 188
>KOG1298 consensus Squalene monooxygenase [Lipid transport and metabolism]
Probab=33.63 E-value=33 Score=40.43 Aligned_cols=186 Identities=22% Similarity=0.261 Sum_probs=96.3
Q ss_pred cccccccchhhHHhhhcccccceeEEeEEeeEEEEEEeccCCCCCCcccccchhhhhhhhcccccchHHHHHHHhhhccc
Q 002312 21 LPQAGIQASDCVKAACENVRCKRFKVTKVNGFIVYSRVKRSRFSNSDDLLEDDVIDKRINSKIHEGRINKVVKNVLNENG 100 (937)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (937)
|-+.|++ |||+-. .-.+|+|+-+|--=+.-.-+-...-.++|+- -...|.||..|-+.+..
T Consensus 97 L~~LGl~--Dcve~I---------DAQ~v~Gy~ifk~gk~v~~pyP~~~f~~d~~----GrsFhnGRFvq~lR~ka---- 157 (509)
T KOG1298|consen 97 LSKLGLE--DCVEGI---------DAQRVTGYAIFKDGKEVDLPYPLKNFPSDPS----GRSFHNGRFVQRLRKKA---- 157 (509)
T ss_pred HHHhCHH--HHhhcc---------cceEeeeeEEEeCCceeeccCCCcCCCCCcc----cceeeccHHHHHHHHHH----
Confidence 3444554 898643 3456899999964333332222222345543 44689999999887732
Q ss_pred chhhhHHhhh-hhhcchHHHHHHHH--hhCCCCCCccCCCCCccceeecCCCCcccc--cCccc---c--ccCCcccCCC
Q 002312 101 ILESVVEEEN-QLVQMTVENVIEET--VKGKKAPICKEEPISKVECFPRKEGGSEVS--NGLNK---K--CLKRPSAMKP 170 (937)
Q Consensus 101 ~~~~~~~~~~-~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~---~--~~~trs~lk~ 170 (937)
..++| ++.|=||..++||- +||.+ ..+++|.+.+ .++.. . -+|+||+-++
T Consensus 158 -----~slpNV~~eeGtV~sLlee~gvvkGV~---------------yk~k~gee~~~~ApLTvVCDGcfSnlRrsL~~~ 217 (509)
T KOG1298|consen 158 -----ASLPNVRLEEGTVKSLLEEEGVVKGVT---------------YKNKEGEEVEAFAPLTVVCDGCFSNLRRSLCDP 217 (509)
T ss_pred -----hcCCCeEEeeeeHHHHHhccCeEEeEE---------------EecCCCceEEEecceEEEecchhHHHHHHhcCC
Confidence 12222 22233555444432 33322 3444444444 34432 2 4788999999
Q ss_pred CCCcccccccccc--CCCCC--------------------ccchhhhhhhhcCCCCCCCCcccccccc-ccccCCCCCch
Q 002312 171 KVEPVEVLVTQSE--GFGNE--------------------SMSLIEVEAIAEGSALTSPKKNLELKMS-KKISLNKKPMT 227 (937)
Q Consensus 171 k~e~~~~~~~~~~--~~~~~--------------------~~~~~~~~~~~~~~~~~~~~~~~~~k~~-kk~~~~~~p~~ 227 (937)
||+++.+.-.+.- +-... +++++++--. -.++.-|+-.|.||+.. |+..--.+|..
T Consensus 218 ~v~~V~S~fVG~vl~N~~l~~p~hghvIL~~pspil~Y~ISStEvRcl~~-v~g~~~Psi~~gem~~~mk~~v~PqiP~~ 296 (509)
T KOG1298|consen 218 KVEEVPSYFVGLVLKNCRLPAPNHGHVILSKPSPILVYQISSTEVRCLVD-VPGQKLPSIANGEMATYMKESVAPQIPEK 296 (509)
T ss_pred cccccchheeeeeecCCCCCCCCcceEEecCCCcEEEEEecchheEEEEe-cCcccCCcccchhHHHHHHHhhCcCCCHH
Confidence 9998765443321 11000 0111111111 11334455667676543 44445568999
Q ss_pred hhHhhhcCC----CCCceEEEEc
Q 002312 228 VTELFETGL----LDGVSVVYMG 246 (937)
Q Consensus 228 vk~Ll~tGl----leG~~V~Y~~ 246 (937)
+|+-+..++ +--+|=+||.
T Consensus 297 lR~~F~~av~~g~irsmpn~~mp 319 (509)
T KOG1298|consen 297 LRESFLEAVDEGNIRSMPNSSMP 319 (509)
T ss_pred HHHHHHHHhhccchhcCccccCC
Confidence 999865444 4445556653
No 189
>PF10497 zf-4CXXC_R1: Zinc-finger domain of monoamine-oxidase A repressor R1; InterPro: IPR018866 R1 is a transcription factor repressor that inhibits monoamine oxidase A gene expression. This domain is a four-CXXC zinc finger putative DNA-binding domain found at the C-terminal end of R1. The domain carries 12 cysteines of which four pairs are of the CXXC type [].
Probab=32.16 E-value=14 Score=35.60 Aligned_cols=51 Identities=25% Similarity=0.590 Sum_probs=32.5
Q ss_pred ccccccCCCCCCCCCCCCceeeC------CCC---CCcCCCCCCCcC-cCCcccCCCCCcceecCCccc
Q 002312 648 GCLLCRGCDFSKSGFGPRTILLC------DQC---EREFHVGCLKKH-KMADLRELPKGKWFCCMDCSR 706 (937)
Q Consensus 648 ~C~vC~~~df~~sgf~~~tLL~C------DqC---dr~yHv~CL~p~-~~~~L~evP~g~WfCc~~C~~ 706 (937)
.|+.|+... .+..+.| ..| ...|--.||... ++...+.+...+|.| +.|..
T Consensus 9 ~CHqCrqKt-------~~~~~~C~~~~~~~~C~~~~~~fC~~CL~~ryge~~~ev~~~~~W~C-P~Crg 69 (105)
T PF10497_consen 9 TCHQCRQKT-------LDFKTICTGHWKNSSCRGCRGKFCGGCLRNRYGENVEEVLEDPNWKC-PKCRG 69 (105)
T ss_pred CchhhcCCC-------CCCceEcCCCCCCCCCccCcceehHhHHHHHHhhhHHHHhcCCceEC-CCCCC
Confidence 499998743 2334566 566 888989998654 222223345678999 77865
No 190
>PLN02915 cellulose synthase A [UDP-forming], catalytic subunit
Probab=30.36 E-value=35 Score=44.37 Aligned_cols=56 Identities=25% Similarity=0.600 Sum_probs=44.8
Q ss_pred CcccccccCccCCcCcccccCCCCceecccCCCcccccccCCCCCCCCCCcccccccccccc
Q 002312 545 LGIICHCCNSEVSPSQFEAHADGGNLLPCDGCPRAFHKECASLSSIPQGDWYCKYCQNMFER 606 (937)
Q Consensus 545 ~~i~C~~C~~eiSpS~FE~HAdgG~Ll~CDgCp~afH~~CL~L~~vPeG~W~Cp~C~~~~~~ 606 (937)
.+.+|.+|+..+-.. ++|.-.+-|..|.-.....|+.- +..+|.=.||.|+..+.+
T Consensus 14 ~~~~c~iCGd~vg~~-----~~Ge~FVAC~eC~fpvCr~cyey-e~~~g~~~cp~c~t~y~~ 69 (1044)
T PLN02915 14 DAKTCRVCGDEVGVK-----EDGQPFVACHVCGFPVCKPCYEY-ERSEGNQCCPQCNTRYKR 69 (1044)
T ss_pred CcchhhccccccCcC-----CCCCEEEEeccCCCccccchhhh-hhhcCCccCCccCCchhh
Confidence 568899999876543 37777799999998888899953 567889999999987654
No 191
>KOG1701 consensus Focal adhesion adaptor protein Paxillin and related LIM proteins [Signal transduction mechanisms]
Probab=28.89 E-value=54 Score=38.80 Aligned_cols=7 Identities=43% Similarity=1.564 Sum_probs=3.3
Q ss_pred cccccCC
Q 002312 649 CLLCRGC 655 (937)
Q Consensus 649 C~vC~~~ 655 (937)
||.|.+.
T Consensus 427 CY~CEDC 433 (468)
T KOG1701|consen 427 CYKCEDC 433 (468)
T ss_pred ceehhhc
Confidence 5544443
No 192
>TIGR02174 CXXU_selWTH selT/selW/selH selenoprotein domain. This model represents a domain found in both bacteria and animals, including animal proteins SelT, SelW, and SelH, all of which are selenoproteins. In a CXXC motif near the N-terminus of the domain, selenocysteine may replace the second Cys. Proteins with this domain may include an insert of about 70 amino acids. This model is broader than the current SelW model pfam05169 in Pfam.
Probab=28.62 E-value=39 Score=30.20 Aligned_cols=29 Identities=34% Similarity=0.680 Sum_probs=23.8
Q ss_pred ccceeEEeEEeeEEEEEEeccCCCCCCccc
Q 002312 40 RCKRFKVTKVNGFIVYSRVKRSRFSNSDDL 69 (937)
Q Consensus 40 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 69 (937)
+=-.|.|+ |||-+||||++..+|-..+.|
T Consensus 39 ~~G~Fev~-~~g~~v~sk~~~~~fp~~~~~ 67 (72)
T TIGR02174 39 TTGAFEVT-VNGQLVWSKLRGGGFPEPEEL 67 (72)
T ss_pred CCcEEEEE-ECCEEEEEeccCCCCCCHHHH
Confidence 44579997 799999999999998876654
No 193
>KOG1632 consensus Uncharacterized PHD Zn-finger protein [General function prediction only]
Probab=28.43 E-value=32 Score=39.66 Aligned_cols=44 Identities=20% Similarity=0.480 Sum_probs=34.1
Q ss_pred ceeeCCCCCCcCCCCC--CCcCcCCcccCCCCCcceecCCccchhHHHHH
Q 002312 666 TILLCDQCEREFHVGC--LKKHKMADLRELPKGKWFCCMDCSRINSVLQN 713 (937)
Q Consensus 666 tLL~CDqCdr~yHv~C--L~p~~~~~L~evP~g~WfCc~~C~~I~~~Lqk 713 (937)
.++.|+.|..+||..| ++. +-.+..+...|+| ..|......++.
T Consensus 74 ~~~~cd~C~~~~~~ec~~v~~---~~~e~p~~~~~~c-~~c~~~~~~~~~ 119 (345)
T KOG1632|consen 74 LMEQCDLCEDWYHGECWEVGT---AEKEAPKEDPKVC-DECKEAQDGMSE 119 (345)
T ss_pred hhhccccccccccccccccCc---hhhcCCccccccc-cccchhhhhhhh
Confidence 6789999999999999 754 3344445678999 999888766653
No 194
>PHA02926 zinc finger-like protein; Provisional
Probab=28.39 E-value=28 Score=38.03 Aligned_cols=59 Identities=22% Similarity=0.383 Sum_probs=33.5
Q ss_pred cCCcccccccCccCCcCcccccCCCCceecccCCCcccccccCC-CCCC---CCCCcccccccccc
Q 002312 543 NGLGIICHCCNSEVSPSQFEAHADGGNLLPCDGCPRAFHKECAS-LSSI---PQGDWYCKYCQNMF 604 (937)
Q Consensus 543 ~~~~i~C~~C~~eiSpS~FE~HAdgG~Ll~CDgCp~afH~~CL~-L~~v---PeG~W~Cp~C~~~~ 604 (937)
...+..|++|.+.+..-.-+.....|-| +.|.+.|+..|+. +... ..+...||.|+..+
T Consensus 167 ~SkE~eCgICmE~I~eK~~~~eRrFGIL---~~CnHsFCl~CIr~Wr~~r~~~~~~rsCPiCR~~f 229 (242)
T PHA02926 167 VSKEKECGICYEVVYSKRLENDRYFGLL---DSCNHIFCITCINIWHRTRRETGASDNCPICRTRF 229 (242)
T ss_pred ccCCCCCccCcccccccccccccccccc---CCCCchHHHHHHHHHHHhccccCcCCcCCCCccee
Confidence 4567889999975421000000012333 4577889999984 2211 12357899999764
No 195
>PF10367 Vps39_2: Vacuolar sorting protein 39 domain 2; InterPro: IPR019453 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised In Vps39 this domain is involved in localisation and in mediating the interactions with Vps11 [].
Probab=27.66 E-value=42 Score=30.99 Aligned_cols=32 Identities=22% Similarity=0.451 Sum_probs=21.8
Q ss_pred CCcccccccCccCCcCcccccCCCCceecccCCCcccccccC
Q 002312 544 GLGIICHCCNSEVSPSQFEAHADGGNLLPCDGCPRAFHKECA 585 (937)
Q Consensus 544 ~~~i~C~~C~~eiSpS~FE~HAdgG~Ll~CDgCp~afH~~CL 585 (937)
.++..|.+|++.+..+.| .---|+..||..|+
T Consensus 76 ~~~~~C~vC~k~l~~~~f----------~~~p~~~v~H~~C~ 107 (109)
T PF10367_consen 76 TESTKCSVCGKPLGNSVF----------VVFPCGHVVHYSCI 107 (109)
T ss_pred CCCCCccCcCCcCCCceE----------EEeCCCeEEecccc
Confidence 456779999998754332 22234588999997
No 196
>COG5027 SAS2 Histone acetyltransferase (MYST family) [Chromatin structure and dynamics]
Probab=27.28 E-value=30 Score=39.87 Aligned_cols=75 Identities=17% Similarity=0.221 Sum_probs=43.0
Q ss_pred HHHHHHHHHhhhhcCCCcccCCCCCCccccccccccCCCceecceEEEEEeeCCe----EEEEEEEEEeCCeeEEEeeeE
Q 002312 761 RLLLSQAVAIFHDCFDPIVDSISGRDLIPSMVYGRNLRGQEFGGMYCAILTVNSS----VVSAGILRVFGQEVAELPLVA 836 (937)
Q Consensus 761 ~~~La~AL~If~EcF~Pivd~~TgrDLIp~MVy~r~~~~~~f~GfY~~VL~~~~~----vVsaA~lri~g~~vAEiplVA 836 (937)
+..+.+-|-.+..+| +|++ |+| +|..+|--+||...|. +||-=+=--...+--.+--|-
T Consensus 207 q~~~CrnLCLlsKlF---Ld~K--------tLY------yDVDpflFYvl~~~~~~~~h~vGyFSKEK~S~~~yNLaCIL 269 (395)
T COG5027 207 QRLYCRNLCLLSKLF---LDHK--------TLY------YDVDPFLFYVLTERGDTGCHLVGYFSKEKESEQDYNLACIL 269 (395)
T ss_pred hhhHHHHHHHHHHHH---hcCc--------eeE------EeccceEEEEEEEcCCcceeeeeeechhhcccccCceEEEE
Confidence 455677777777888 3332 222 2444544444454333 233211111112334577888
Q ss_pred eeccccCCChhHHHHH
Q 002312 837 TSKINHGKGYFQLLFA 852 (937)
Q Consensus 837 T~~~yRgqG~gr~L~~ 852 (937)
|.|.|||+|||..|++
T Consensus 270 tLP~yQRrGYG~lLId 285 (395)
T COG5027 270 TLPPYQRRGYGKLLID 285 (395)
T ss_pred ecChhHhcccceEeee
Confidence 9999999999999876
No 197
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=25.49 E-value=27 Score=44.21 Aligned_cols=39 Identities=21% Similarity=0.528 Sum_probs=28.4
Q ss_pred ccccccCccCCcCcccccCCCCceecc-cCCCcccccccCCCCCCCCCCcccccccc
Q 002312 547 IICHCCNSEVSPSQFEAHADGGNLLPC-DGCPRAFHKECASLSSIPQGDWYCKYCQN 602 (937)
Q Consensus 547 i~C~~C~~eiSpS~FE~HAdgG~Ll~C-DgCp~afH~~CL~L~~vPeG~W~Cp~C~~ 602 (937)
..|..|...+ ++-.- -.|.++||+.|+. +++--||.|..
T Consensus 841 skCs~C~~~L------------dlP~VhF~CgHsyHqhC~e-----~~~~~CP~C~~ 880 (933)
T KOG2114|consen 841 SKCSACEGTL------------DLPFVHFLCGHSYHQHCLE-----DKEDKCPKCLP 880 (933)
T ss_pred eeecccCCcc------------ccceeeeecccHHHHHhhc-----cCcccCCccch
Confidence 3699998422 22222 2689999999996 67789999985
No 198
>KOG1829 consensus Uncharacterized conserved protein, contains C1, PH and RUN domains [Signal transduction mechanisms]
Probab=25.38 E-value=18 Score=44.26 Aligned_cols=36 Identities=17% Similarity=0.332 Sum_probs=26.3
Q ss_pred CcccccccCccCCcCcccccCCCCceecccCCCcccccccCC
Q 002312 545 LGIICHCCNSEVSPSQFEAHADGGNLLPCDGCPRAFHKECAS 586 (937)
Q Consensus 545 ~~i~C~~C~~eiSpS~FE~HAdgG~Ll~CDgCp~afH~~CL~ 586 (937)
.+-.|..|+..+.+. --...-.|+-++.-||..|..
T Consensus 339 Q~~~CAgC~~~i~~~------~~~~~R~C~y~G~y~C~~Ch~ 374 (580)
T KOG1829|consen 339 QNFRCAGCGHTIGPD------LEQRPRLCRYLGKYFCDCCHQ 374 (580)
T ss_pred cCceecccCCCcccc------cccchhHhhhhhhhhCchhcc
Confidence 445799999877642 234667888888888888884
No 199
>PF05301 Mec-17: Touch receptor neuron protein Mec-17; InterPro: IPR007965 Mec-17 is the protein product of one of the 18 genes required for the development and function of the touch receptor neuron for gentle touch. Mec-17 is specifically required for maintaining the differentiation of the touch receptor []. This family is conserved to higher eukaryotes.; GO: 0019799 tubulin N-acetyltransferase activity
Probab=25.14 E-value=53 Score=32.69 Aligned_cols=49 Identities=12% Similarity=0.254 Sum_probs=30.3
Q ss_pred eeccccCCChhHHHHHHHHHHhhhcCccEEEecChh-hhHHHHHhccCcEE
Q 002312 837 TSKINHGKGYFQLLFACIEKLLSFLRVKSIVLPAAE-EAESIWTDKFGFKK 886 (937)
Q Consensus 837 T~~~yRgqG~gr~L~~~IE~~l~~lgV~~LvLpA~~-ea~~~w~~kfGF~~ 886 (937)
|.+..||+|+|+.|++.+.+.- .+....+.++--. -...|..+-+|-+.
T Consensus 54 Vhes~QR~G~Gk~LF~~ML~~e-~~~p~~~a~DrPS~Kll~Fl~Khy~L~~ 103 (120)
T PF05301_consen 54 VHESRQRRGYGKRLFDHMLQEE-NVSPHQLAIDRPSPKLLSFLKKHYGLQR 103 (120)
T ss_pred EEeceeccCchHHHHHHHHHHc-CCCcccceecCCcHHHHHHHHHhcCCCc
Confidence 7899999999999999877652 2223334433222 24555555455543
No 200
>PF13771 zf-HC5HC2H: PHD-like zinc-binding domain
Probab=24.85 E-value=40 Score=30.58 Aligned_cols=32 Identities=38% Similarity=0.967 Sum_probs=25.5
Q ss_pred CCcccccccCccCCcCcccccCCCCceeccc--CCCcccccccCC
Q 002312 544 GLGIICHCCNSEVSPSQFEAHADGGNLLPCD--GCPRAFHKECAS 586 (937)
Q Consensus 544 ~~~i~C~~C~~eiSpS~FE~HAdgG~Ll~CD--gCp~afH~~CL~ 586 (937)
.....|..|.+ ..|-.+-|. +|...||..|.-
T Consensus 34 ~~~~~C~~C~~-----------~~Ga~i~C~~~~C~~~fH~~CA~ 67 (90)
T PF13771_consen 34 RRKLKCSICKK-----------KGGACIGCSHPGCSRSFHVPCAR 67 (90)
T ss_pred HhCCCCcCCCC-----------CCCeEEEEeCCCCCcEEChHHHc
Confidence 44568999995 347788886 699999999983
No 201
>KOG0317 consensus Predicted E3 ubiquitin ligase, integral peroxisomal membrane protein [Posttranslational modification, protein turnover, chaperones]
Probab=24.50 E-value=22 Score=39.91 Aligned_cols=54 Identities=15% Similarity=0.269 Sum_probs=36.5
Q ss_pred cccCCcccccccCccCCcCcccccCCCCceecccCCCcccccccCCCCCCCCCCcccccccccccccc
Q 002312 541 YKNGLGIICHCCNSEVSPSQFEAHADGGNLLPCDGCPRAFHKECASLSSIPQGDWYCKYCQNMFERKR 608 (937)
Q Consensus 541 ~k~~~~i~C~~C~~eiSpS~FE~HAdgG~Ll~CDgCp~afH~~CL~L~~vPeG~W~Cp~C~~~~~~ek 608 (937)
.+....-.|..|.+.. .-..|.-|++-|...|+ .+|-...--||-|+..+++.+
T Consensus 234 ~i~~a~~kC~LCLe~~------------~~pSaTpCGHiFCWsCI--~~w~~ek~eCPlCR~~~~psk 287 (293)
T KOG0317|consen 234 SIPEATRKCSLCLENR------------SNPSATPCGHIFCWSCI--LEWCSEKAECPLCREKFQPSK 287 (293)
T ss_pred cCCCCCCceEEEecCC------------CCCCcCcCcchHHHHHH--HHHHccccCCCcccccCCCcc
Confidence 3455667899999643 22357789999999999 333333334999998776543
No 202
>PF10262 Rdx: Rdx family; InterPro: IPR011893 This entry represents the Rdx family of selenoproteins, which includes mammalian selenoproteins SelW, SelV, SelT and SelH, bacterial SelW-like proteins and cysteine-containing proteins of unknown function in all three domains of life. Mammalian Rdx12 and its fish selenoprotein orthologues are also members of this family []. These proteins possess a thioredoxin-like fold and a conserved CXXC or CxxU (U is selenocysteine) motif near the N terminus, suggesting a redox function. Rdx proteins can use catalytic cysteine (or selenocysteine) to form transient mixed disulphides with substrate proteins. Selenium (Se) plays an essential role in cell survival and most of the effects of Se are probably mediated by selenoproteins. Selenoprotein W (SelW) plays an important role in protection of neurons from oxidative stress during neuronal development [], []. Selenoprotein T (SelT) is conserved from plants to humans. SelT is localized to the endoplasmic reticulum through a hydrophobic domain. The protein binds to UDP-glucose:glycoprotein glucosyltransferase (UGTR), the endoplasmic reticulum (ER)-resident protein, which is known to be involved in the quality control of protein folding [, ]. The function of SelT is unknown, although it may have a role in PACAP signaling during PC12 cell differentiation [, ]. Selenoprotein H (SelH) protects neurons against UVB-induced damage by inhibiting apoptotic cell death pathways, by preventing mitochondrial depolarization, and by promoting cell survival pathways [].; GO: 0008430 selenium binding, 0045454 cell redox homeostasis; PDB: 2OJL_B 2FA8_A 2P0G_C 2NPB_A 3DEX_C 2OKA_A 2OBK_G.
Probab=24.29 E-value=22 Score=31.87 Aligned_cols=27 Identities=37% Similarity=0.778 Sum_probs=21.0
Q ss_pred cceeEEeEEeeEEEEEEeccCCCCCCcc
Q 002312 41 CKRFKVTKVNGFIVYSRVKRSRFSNSDD 68 (937)
Q Consensus 41 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 68 (937)
=-.|.|+ |||-+|||++...+|-+.+.
T Consensus 42 ~G~FEV~-v~g~lI~SK~~~g~fP~~~~ 68 (76)
T PF10262_consen 42 TGAFEVT-VNGELIFSKLESGRFPDPDE 68 (76)
T ss_dssp TT-EEEE-ETTEEEEEHHHHTSSS-HHH
T ss_pred CCEEEEE-EccEEEEEehhcCCCCCHHH
Confidence 3469985 89999999999998887655
No 203
>PF07649 C1_3: C1-like domain; InterPro: IPR011424 This short domain is rich in cysteines and histidines. The pattern of conservation is similar to that found in IPR002219 from INTERPRO. C1 domains are protein kinase C-like zinc finger structures. Diacylglycerol (DAG) kinases (DGKs) have a two or three commonly conserved cysteine-rich C1 domains []. DGKs modulate the balance between the two signaling lipids, DAG and phosphatidic acid (PA), by phosphorylating DAG to yield PA []. The PKD (protein kinase D) family are novel DAG receptors. They have twin C1 domains, designated C1a and C1b, which bind DAG or phorbol esters. Individual C1 domains differ in ligand-binding activity and selectivity []. ; GO: 0047134 protein-disulfide reductase activity, 0055114 oxidation-reduction process; PDB: 1V5N_A.
Probab=24.28 E-value=23 Score=26.31 Aligned_cols=27 Identities=22% Similarity=0.566 Sum_probs=11.7
Q ss_pred cccccCCCCCCCCCCCCceeeCCCCCCcCCCCC
Q 002312 649 CLLCRGCDFSKSGFGPRTILLCDQCEREFHVGC 681 (937)
Q Consensus 649 C~vC~~~df~~sgf~~~tLL~CDqCdr~yHv~C 681 (937)
|..|+... .......|.+|+-..|..|
T Consensus 3 C~~C~~~~------~~~~~Y~C~~Cdf~lH~~C 29 (30)
T PF07649_consen 3 CDACGKPI------DGGWFYRCSECDFDLHEEC 29 (30)
T ss_dssp -TTTS----------S--EEE-TTT-----HHH
T ss_pred CCcCCCcC------CCCceEECccCCCccChhc
Confidence 88888652 2247899999999999887
No 204
>PRK13361 molybdenum cofactor biosynthesis protein A; Provisional
Probab=23.92 E-value=1.8e+02 Score=32.93 Aligned_cols=68 Identities=22% Similarity=0.267 Sum_probs=51.2
Q ss_pred eeeEEEeCCeEEeeCcCCCCceeeCcchhhhccccccCCcccceeccCCccHHHHHHHhhcCCc-hhHHHHHHHHhcCCC
Q 002312 254 GLRGIIRDGGILCSCSLCNGCRVIPPSKFEIHACKQYRRASQYICFENGKSLLEVLRACRSVPL-PMLKATLQSALSSLP 332 (937)
Q Consensus 254 ~l~G~i~~~GilC~C~~C~~~~v~s~s~FE~HAG~~~~~p~~~I~lenG~sL~~v~~~~~~~~l-~~l~~~i~~~~g~~~ 332 (937)
..-|.|...... +|..|| +--||+ ...+|.+ +|-++|.+|+++++. ++.. +.|.++|+.++..-|
T Consensus 242 ~~ig~I~~~s~~-fC~~Cn-r~rlt~-~G~l~~C---------l~~~~~~~l~~~l~~--~~~~~~~l~~~~~~~~~~k~ 307 (329)
T PRK13361 242 IHIGFISPHSHN-FCHECN-RVRVTA-EGQLLLC---------LGNEHASDLRSILRE--GPGDIERLKAAILAAINLKP 307 (329)
T ss_pred eEEEEEcCCCcc-ccccCC-eEEEcc-CCcEEec---------CCCCCCcchHHHHhc--CCCcHHHHHHHHHHHHHcCc
Confidence 558999987776 999998 445666 6677776 677889999988765 4455 379999999888765
Q ss_pred ccc
Q 002312 333 EEK 335 (937)
Q Consensus 333 ~~~ 335 (937)
...
T Consensus 308 ~~~ 310 (329)
T PRK13361 308 KGH 310 (329)
T ss_pred ccc
Confidence 433
No 205
>KOG1081 consensus Transcription factor NSD1 and related SET domain proteins [Transcription]
Probab=23.24 E-value=50 Score=39.61 Aligned_cols=46 Identities=24% Similarity=0.533 Sum_probs=37.7
Q ss_pred CCcccccccCccCCcCcccccCCCCceecccCCCcccccccCCCCCCCCCCcccccccc
Q 002312 544 GLGIICHCCNSEVSPSQFEAHADGGNLLPCDGCPRAFHKECASLSSIPQGDWYCKYCQN 602 (937)
Q Consensus 544 ~~~i~C~~C~~eiSpS~FE~HAdgG~Ll~CDgCp~afH~~CL~L~~vPeG~W~Cp~C~~ 602 (937)
.+...|.+|. ++|.+++|+.|..++|..|... ..|...|.|..|..
T Consensus 87 ~~~~~c~vc~------------~ggs~v~~~s~~~~~~r~c~~~-~~~~c~~~~~d~~~ 132 (463)
T KOG1081|consen 87 IEPSECFVCF------------KGGSLVTCKSRIQAPHRKCKPA-QLEKCSKRCTDCRA 132 (463)
T ss_pred CCcchhcccc------------CCCccceeccccccccccCcCc-cCcccccCCcceee
Confidence 3567899999 7999999999999999999864 56777788877764
No 206
>COG5540 RING-finger-containing ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=23.21 E-value=27 Score=39.58 Aligned_cols=50 Identities=22% Similarity=0.421 Sum_probs=34.0
Q ss_pred cCCcccccccCccCCcCcccccCCCCceecccCCCcccccccCCCCCCCC-CCccccccccc
Q 002312 543 NGLGIICHCCNSEVSPSQFEAHADGGNLLPCDGCPRAFHKECASLSSIPQ-GDWYCKYCQNM 603 (937)
Q Consensus 543 ~~~~i~C~~C~~eiSpS~FE~HAdgG~Ll~CDgCp~afH~~CL~L~~vPe-G~W~Cp~C~~~ 603 (937)
.+.|.-|.+|-+.+. -++-+.---|.+.||..|++ .|-- ....||-|+..
T Consensus 320 a~~GveCaICms~fi---------K~d~~~vlPC~H~FH~~Cv~--kW~~~y~~~CPvCrt~ 370 (374)
T COG5540 320 ADKGVECAICMSNFI---------KNDRLRVLPCDHRFHVGCVD--KWLLGYSNKCPVCRTA 370 (374)
T ss_pred cCCCceEEEEhhhhc---------ccceEEEeccCceechhHHH--HHHhhhcccCCccCCC
Confidence 355688999986543 22334444577999999994 4433 46889999864
No 207
>PLN02195 cellulose synthase A
Probab=22.68 E-value=59 Score=42.17 Aligned_cols=56 Identities=25% Similarity=0.631 Sum_probs=44.4
Q ss_pred CCcccccccCccCCcCcccccCCCCceecccCCCcccccccCCCCCCCCCCccccccccccc
Q 002312 544 GLGIICHCCNSEVSPSQFEAHADGGNLLPCDGCPRAFHKECASLSSIPQGDWYCKYCQNMFE 605 (937)
Q Consensus 544 ~~~i~C~~C~~eiSpS~FE~HAdgG~Ll~CDgCp~afH~~CL~L~~vPeG~W~Cp~C~~~~~ 605 (937)
..+.+|.+|+..+... ++|.-.+-|..|.-.....|+.- +..+|.=.||.|+..+.
T Consensus 4 ~~~~~c~~cgd~~~~~-----~~g~~fvaC~eC~~pvCrpCyey-er~eg~q~CpqCkt~Yk 59 (977)
T PLN02195 4 SGAPICATCGEEVGVD-----SNGEAFVACHECSYPLCKACLEY-EIKEGRKVCLRCGGPYD 59 (977)
T ss_pred CCCccceecccccCcC-----CCCCeEEEeccCCCccccchhhh-hhhcCCccCCccCCccc
Confidence 3567899999876543 36777799999998888899953 56788999999987765
No 208
>KOG1952 consensus Transcription factor NF-X1, contains NFX-type Zn2+-binding and R3H domains [Transcription]
Probab=22.03 E-value=29 Score=43.94 Aligned_cols=52 Identities=25% Similarity=0.670 Sum_probs=38.6
Q ss_pred CCcccccccCccCCcCcccccCCCCceecccCCCcccccccCC-C--C--CCCCCCccccccccc
Q 002312 544 GLGIICHCCNSEVSPSQFEAHADGGNLLPCDGCPRAFHKECAS-L--S--SIPQGDWYCKYCQNM 603 (937)
Q Consensus 544 ~~~i~C~~C~~eiSpS~FE~HAdgG~Ll~CDgCp~afH~~CL~-L--~--~vPeG~W~Cp~C~~~ 603 (937)
..-..|.+|-..|..+ ..+--|..|-+.||+.|+. + . .--...|.||.|+..
T Consensus 189 ~~~yeCmIC~e~I~~t--------~~~WSC~sCYhVFHl~CI~~WArs~ek~~~~~WrCP~Cqsv 245 (950)
T KOG1952|consen 189 NRKYECMICTERIKRT--------APVWSCKSCYHVFHLNCIKKWARSSEKTGQDGWRCPACQSV 245 (950)
T ss_pred cCceEEEEeeeecccc--------CCceecchhhhhhhHHHHHHHHHHhhhccCccccCCcccch
Confidence 4557899999888754 4678899999999999994 1 1 111235999999853
No 209
>PF00130 C1_1: Phorbol esters/diacylglycerol binding domain (C1 domain); InterPro: IPR002219 Diacylglycerol (DAG) is an important second messenger. Phorbol esters (PE) are analogues of DAG and potent tumour promoters that cause a variety of physiological changes when administered to both cells and tissues. DAG activates a family of serine/threonine protein kinases, collectively known as protein kinase C (PKC) []. Phorbol esters can directly stimulate PKC. The N-terminal region of PKC, known as C1, has been shown [] to bind PE and DAG in a phospholipid and zinc-dependent fashion. The C1 region contains one or two copies (depending on the isozyme of PKC) of a cysteine-rich domain, which is about 50 amino-acid residues long, and which is essential for DAG/PE-binding. The DAG/PE-binding domain binds two zinc ions; the ligands of these metal ions are probably the six cysteines and two histidines that are conserved in this domain.; GO: 0035556 intracellular signal transduction; PDB: 1RFH_A 2FNF_X 3PFQ_A 1PTQ_A 1PTR_A 2VRW_B 1XA6_A 2ENN_A 1TBN_A 1TBO_A ....
Probab=21.83 E-value=94 Score=25.49 Aligned_cols=35 Identities=26% Similarity=0.458 Sum_probs=26.4
Q ss_pred CcccccccCccCCcCcccccCCCCceecccCCCcccccccCC
Q 002312 545 LGIICHCCNSEVSPSQFEAHADGGNLLPCDGCPRAFHKECAS 586 (937)
Q Consensus 545 ~~i~C~~C~~eiSpS~FE~HAdgG~Ll~CDgCp~afH~~CL~ 586 (937)
....|..|++.+.. .+..-+.|..|....|..|+.
T Consensus 10 ~~~~C~~C~~~i~g-------~~~~g~~C~~C~~~~H~~C~~ 44 (53)
T PF00130_consen 10 KPTYCDVCGKFIWG-------LGKQGYRCSWCGLVCHKKCLS 44 (53)
T ss_dssp STEB-TTSSSBECS-------SSSCEEEETTTT-EEETTGGC
T ss_pred CCCCCcccCcccCC-------CCCCeEEECCCCChHhhhhhh
Confidence 45689999987632 356789999999999999995
No 210
>KOG3612 consensus PHD Zn-finger protein [General function prediction only]
Probab=21.70 E-value=56 Score=39.72 Aligned_cols=44 Identities=30% Similarity=0.412 Sum_probs=30.9
Q ss_pred cCcccccCCCCceecccCCCcccccccCCC-CCCCC--CCcccccccc
Q 002312 558 PSQFEAHADGGNLLPCDGCPRAFHKECASL-SSIPQ--GDWYCKYCQN 602 (937)
Q Consensus 558 pS~FE~HAdgG~Ll~CDgCp~afH~~CL~L-~~vPe--G~W~Cp~C~~ 602 (937)
++.||.|. .|..+.|+.|-+.||..|+.. ...+. ..|.||.|..
T Consensus 61 ~~cfechl-pg~vl~c~vc~Rs~h~~c~sp~~q~r~~s~p~~~p~p~s 107 (588)
T KOG3612|consen 61 PFCFECHL-PGAVLKCIVCHRSFHENCQSPDPQKRNYSVPSDKPQPYS 107 (588)
T ss_pred cccccccC-CcceeeeehhhccccccccCcchhhccccccccCCcccc
Confidence 34455555 567788999999999999953 23333 3599998864
No 211
>PF07943 PBP5_C: Penicillin-binding protein 5, C-terminal domain; InterPro: IPR012907 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry contains proteins that are annotated as penicillin-binding protein 5 and 6. These belong to MEROPS peptidase family S11 (D-Ala-D-Ala carboxypeptidase A family, clan SE). Penicillin-binding protein 5 expressed by Escherichia coli functions as a D-alanyl-D-alanine carboxypeptidase. It is composed of two domains that are oriented at approximately right angles to each other. The N-terminal domain (IPR001967 from INTERPRO) is the catalytic domain. The C-terminal domain, this entry, is organised into a sandwich of two anti-parallel beta-sheets, and has a relatively hydrophobic surface as compared to the N-terminal domain. Its precise function is unknown; it may mediate interactions with other cell wall-synthesising enzymes, thus allowing the protein to be recruited to areas of active cell wall synthesis. It may also function as a linker domain that positions the active site in the catalytic domain closer to the peptidoglycan layer, to allow it to interact with cell wall peptides []. ; GO: 0009002 serine-type D-Ala-D-Ala carboxypeptidase activity, 0006508 proteolysis; PDB: 3A3J_A 3MFD_B 1XP4_D 3MZD_A 1NZU_A 1NJ4_A 1Z6F_A 3MZF_A 1NZO_A 3MZE_A ....
Probab=21.64 E-value=1.1e+02 Score=27.55 Aligned_cols=27 Identities=30% Similarity=0.438 Sum_probs=23.5
Q ss_pred CCeEEEEEEEEEeCCeeEEEeeeEeec
Q 002312 813 NSSVVSAGILRVFGQEVAELPLVATSK 839 (937)
Q Consensus 813 ~~~vVsaA~lri~g~~vAEiplVAT~~ 839 (937)
-|+.||.+.+..-|..++++|++|...
T Consensus 62 kG~~vG~~~v~~~~~~i~~vpL~a~~~ 88 (91)
T PF07943_consen 62 KGQVVGTLTVYLDGKLIGEVPLVASED 88 (91)
T ss_dssp TTSEEEEEEEEETTEEEEEEEEEESS-
T ss_pred CCCEEEEEEEEECCEEEEEEEEEECCc
Confidence 489999999988888999999999754
No 212
>TIGR03827 GNAT_ablB putative beta-lysine N-acetyltransferase. Members of this protein family are GNAT family acetyltransferases, based on a seed alignment in which every member is associated with a lysine 2,3-aminomutase family protein, usually as the adjacent gene. This family includes AblB, the enzyme beta-lysine acetyltransferase that completes the two-step synthesis of the osmolyte (compatible solute) N-epsilon-acetyl-beta-lysine; all members of the family may have this function. Note that N-epsilon-acetyl-beta-lysine has been observed only in methanogenic archaea (e.g. Methanosarcina) but that this model, paired with TIGR03820, suggests a much broader distribution.
Probab=21.47 E-value=1.3e+02 Score=32.81 Aligned_cols=43 Identities=9% Similarity=0.159 Sum_probs=39.8
Q ss_pred ChhHHHHHHHHHHhhhcCccEEEecChhhhHHHHHhccCcEEcC
Q 002312 845 GYFQLLFACIEKLLSFLRVKSIVLPAAEEAESIWTDKFGFKKID 888 (937)
Q Consensus 845 G~gr~L~~~IE~~l~~lgV~~LvLpA~~ea~~~w~~kfGF~~i~ 888 (937)
|-...|+..++++++..|..+|++-...++.+.|.+ .||...+
T Consensus 21 ~~~~~~~~~~~~~a~~~~~~ki~~~~~~~~~~~~~~-~g~~~e~ 63 (266)
T TIGR03827 21 NDVEALIPDLDALAKKEGYTKIIAKVPGSDKPLFEE-RGYLEEA 63 (266)
T ss_pred ccHHHHHHHHHHHHHHcCCcEEEEEccHHHHHHHHH-CCCeEEE
Confidence 447899999999999999999999999999999999 9999883
No 213
>COG1675 TFA1 Transcription initiation factor IIE, alpha subunit [Transcription]
Probab=21.23 E-value=63 Score=34.11 Aligned_cols=67 Identities=22% Similarity=0.326 Sum_probs=47.4
Q ss_pred cccceecc--CCccHHHHHHHhhcCCchhHHHHHHHHhcCCCcccceeecccccccccccCCCCCCCCCCCcccc
Q 002312 293 ASQYICFE--NGKSLLEVLRACRSVPLPMLKATLQSALSSLPEEKSFACVRCKGTFPITCVGKTGPGPLCNSCVK 365 (937)
Q Consensus 293 p~~~I~le--nG~sL~~v~~~~~~~~l~~l~~~i~~~~g~~~~~~~~~c~~ck~~~~~~~~~~~~~~~~c~~c~~ 365 (937)
+..++|++ |..-+.+++..-.+-+++.|+..++... +...|.|.+|.-.+...---..+ +.|+.|-+
T Consensus 72 ~~~~~y~w~~~~~~v~~~l~~~~~~~le~Lk~~le~~~----~~~~y~C~~~~~r~sfdeA~~~~--F~Cp~Cg~ 140 (176)
T COG1675 72 SGWEEYTWYINYEKVLEVLKGKKRKILEKLKRKLEKET----ENNYYVCPNCHVKYSFDEAMELG--FTCPKCGE 140 (176)
T ss_pred CCcEEEEEEechHHHHHHHHHHHHHHHHHHHHHHHhhc----cCCceeCCCCCCcccHHHHHHhC--CCCCCCCc
Confidence 34555555 8888999999999999999999998533 44589999998755321111222 77988865
No 214
>KOG1642 consensus Ribonuclease, T2 family [RNA processing and modification]
Probab=21.07 E-value=45 Score=37.02 Aligned_cols=59 Identities=19% Similarity=0.221 Sum_probs=45.0
Q ss_pred eeeCcchhhhccccccC-Cc--ccceeccCCccHHH---HHHHhhcC---------CchhHHHHHHHHhcCCCc
Q 002312 275 RVIPPSKFEIHACKQYR-RA--SQYICFENGKSLLE---VLRACRSV---------PLPMLKATLQSALSSLPE 333 (937)
Q Consensus 275 ~v~s~s~FE~HAG~~~~-~p--~~~I~lenG~sL~~---v~~~~~~~---------~l~~l~~~i~~~~g~~~~ 333 (937)
.-+=.-+||.|.-++.- .| ++|=||+.+..|++ ++..|.++ +|+.++.||+.++|..|.
T Consensus 116 ~~fW~HEweKHGTCa~sv~~~~dq~~YF~~~L~l~~k~~l~~~L~~~gI~p~~~~y~l~~I~nAi~~~~G~~p~ 189 (263)
T KOG1642|consen 116 ESFWKHEWEKHGTCASSVFPLCDQHKYFETTLKLKQKLDLLSILKKAGIKPDDNFYSLADIKNAIKEAIGKTPG 189 (263)
T ss_pred chhhhhhhhccCchhhhhhhhhhHHHHHHHHHHHHHHHhHHHHHHHcCCCCCCCceeHHHHHHHHHHHhCCCCc
Confidence 34555688999877744 56 89999999998875 55565543 488899999999998864
No 215
>KOG1472 consensus Histone acetyltransferase SAGA/ADA, catalytic subunit PCAF/GCN5 and related proteins [Chromatin structure and dynamics; Transcription]
Probab=20.55 E-value=24 Score=44.25 Aligned_cols=94 Identities=17% Similarity=0.093 Sum_probs=72.6
Q ss_pred CCceecce-EEEEEeeCCe-EEEEEEEEEeCC-eeEEEeeeEeeccccCCChhHHHHHHHHHHhhhcC-ccEEEecChhh
Q 002312 798 RGQEFGGM-YCAILTVNSS-VVSAGILRVFGQ-EVAELPLVATSKINHGKGYFQLLFACIEKLLSFLR-VKSIVLPAAEE 873 (937)
Q Consensus 798 ~~~~f~Gf-Y~~VL~~~~~-vVsaA~lri~g~-~vAEiplVAT~~~yRgqG~gr~L~~~IE~~l~~lg-V~~LvLpA~~e 873 (937)
.|+.|.+. -++.+..++. +|+.-.+|-|+. +++|+.+-|+...-|-+|+|..||+-+-+..+.-+ +..+...|...
T Consensus 411 ~rlv~d~~h~~~~~~~d~~g~vggi~~r~f~~k~f~eivf~av~~~eqv~g~g~hlmnhlkd~~~~~~~i~~~ltyad~~ 490 (720)
T KOG1472|consen 411 SRLVFDTSHHVMARIKDNEGVVGGICFRPFPEKGFTEIVFCAVTTDEQVKGSGTHLMNHLKDYVRSSSTIDYALTYADEG 490 (720)
T ss_pred HhhccccccccceeeccccccccccccCcCcccCCcceeeccccCcccccccCcCchhhHHHHhhccchHHHHHHhhhhc
Confidence 46777664 4444455655 999999998885 89999999999999999999999999988888877 66777777766
Q ss_pred hHHHHHhccCcEEcCHHHH
Q 002312 874 AESIWTDKFGFKKIDPELL 892 (937)
Q Consensus 874 a~~~w~~kfGF~~i~~~el 892 (937)
|.....+ -||+.--+.+.
T Consensus 491 aigyfkk-qgfs~ei~~~~ 508 (720)
T KOG1472|consen 491 AIGYFKK-QGFSKEIKFEK 508 (720)
T ss_pred ccccccC-ccchhhccccc
Confidence 6654444 88886544443
No 216
>COG5243 HRD1 HRD ubiquitin ligase complex, ER membrane component [Posttranslational modification, protein turnover, chaperones]
Probab=20.38 E-value=30 Score=40.18 Aligned_cols=57 Identities=21% Similarity=0.448 Sum_probs=34.4
Q ss_pred CCcccccccCcc-CCcCcccccCCCCceecc-cCCCcccccccCCCCCCCCCCccccccccc
Q 002312 544 GLGIICHCCNSE-VSPSQFEAHADGGNLLPC-DGCPRAFHKECASLSSIPQGDWYCKYCQNM 603 (937)
Q Consensus 544 ~~~i~C~~C~~e-iSpS~FE~HAdgG~Ll~C-DgCp~afH~~CL~L~~vPeG~W~Cp~C~~~ 603 (937)
.++-.|.+|..+ +++.+ |..-.+-++..= --|++.+|+.|+ +.|-+..-.||.|+..
T Consensus 285 n~D~~C~ICmde~~h~~~-~~~~~~~~~~pKrLpCGHilHl~CL--knW~ERqQTCPICr~p 343 (491)
T COG5243 285 NSDRTCTICMDEMFHPDH-EPLPRGLDMTPKRLPCGHILHLHCL--KNWLERQQTCPICRRP 343 (491)
T ss_pred CCCCeEEEecccccCCCC-ccCcccccCCcccccccceeeHHHH--HHHHHhccCCCcccCc
Confidence 455689999976 44321 111111111111 137888999999 4566666789999976
No 217
>smart00184 RING Ring finger. E3 ubiquitin-protein ligase activity is intrinsic to the RING domain of c-Cbl and is likely to be a general function of this domain; Various RING fingers exhibit binding activity towards E2 ubiquitin-conjugating enzymes (Ubc' s)
Probab=20.04 E-value=20 Score=26.04 Aligned_cols=25 Identities=24% Similarity=0.628 Sum_probs=15.6
Q ss_pred cCCCcccccccCC-CCCCCCCCcccccc
Q 002312 574 DGCPRAFHKECAS-LSSIPQGDWYCKYC 600 (937)
Q Consensus 574 DgCp~afH~~CL~-L~~vPeG~W~Cp~C 600 (937)
..|.+.||..|+. +.. .+...||.|
T Consensus 14 ~~C~H~~c~~C~~~~~~--~~~~~CP~C 39 (39)
T smart00184 14 LPCGHTFCRSCIRKWLK--SGNNTCPIC 39 (39)
T ss_pred ecCCChHHHHHHHHHHH--hCcCCCCCC
Confidence 3588899999984 111 234457655
No 218
>PF08746 zf-RING-like: RING-like domain; InterPro: IPR014857 This is a zinc finger domain that is related to the C3HC4 RING finger domain (IPR001841 from INTERPRO). ; PDB: 3NW0_A 2CT0_A.
Probab=20.03 E-value=39 Score=27.51 Aligned_cols=39 Identities=23% Similarity=0.669 Sum_probs=17.7
Q ss_pred ccccCccCCcCcccccCCCCceeccc--CCCcccccccCC--CCCCCCCCcccccc
Q 002312 549 CHCCNSEVSPSQFEAHADGGNLLPCD--GCPRAFHKECAS--LSSIPQGDWYCKYC 600 (937)
Q Consensus 549 C~~C~~eiSpS~FE~HAdgG~Ll~CD--gCp~afH~~CL~--L~~vPeG~W~Cp~C 600 (937)
|..|.+.++- -+.|. .|+..+|..|+. +...... .||.|
T Consensus 1 C~~C~~iv~~-----------G~~C~~~~C~~r~H~~C~~~y~r~~~~~--~CP~C 43 (43)
T PF08746_consen 1 CEACKEIVTQ-----------GQRCSNRDCNVRLHDDCFKKYFRHRSNP--KCPNC 43 (43)
T ss_dssp -TTT-SB-SS-----------SEE-SS--S--EE-HHHHHHHTTT-SS---B-TTT
T ss_pred CcccchhHee-----------eccCCCCccCchHHHHHHHHHHhcCCCC--CCcCC
Confidence 5677765431 24576 699999999996 3333221 68876
Done!