BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 002313
(937 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4FCG|A Chain A, Structure Of The Leucine-Rich Repeat Domain Of The Type
Iii Effector Xcv3220 (Xopl)
Length = 328
Score = 40.4 bits (93), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 38/119 (31%), Positives = 59/119 (49%), Gaps = 11/119 (9%)
Query: 247 QIPDPF--------FEGMTELRVLDLTGFRFHSLPSSLGCLINLRTLSLENCLVVDVA-I 297
++P+P +G+ L+ L L SLP+S+ L NL++L + N + +
Sbjct: 165 ELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSPLSALGPA 224
Query: 298 IGDLKKLEILSLKH-SSIEQLPREIGQLTCLKLLDLSNCSKLKEIRPNVISNLTRLEEL 355
I L KLE L L+ +++ P G LK L L +CS L + P I LT+LE+L
Sbjct: 225 IHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTL-PLDIHRLTQLEKL 282
>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
pdb|3RGZ|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
Length = 768
Score = 38.5 bits (88), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 26/64 (40%), Positives = 38/64 (59%), Gaps = 2/64 (3%)
Query: 298 IGDLKKLEILSLKHSSIE-QLPREIGQLTCLKLLDLSNCSKLKEIRPNVISNLTRLEELY 356
IG + L IL+L H+ I +P E+G L L +LDLS+ +KL P +S LT L E+
Sbjct: 652 IGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSS-NKLDGRIPQAMSALTMLTEID 710
Query: 357 MGNS 360
+ N+
Sbjct: 711 LSNN 714
>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1
Ectodomain
pdb|3RJ0|A Chain A, Plant Steroid Receptor Bri1 Ectodomain In Complex With
Brassinolide
Length = 772
Score = 38.5 bits (88), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 26/64 (40%), Positives = 38/64 (59%), Gaps = 2/64 (3%)
Query: 298 IGDLKKLEILSLKHSSIE-QLPREIGQLTCLKLLDLSNCSKLKEIRPNVISNLTRLEELY 356
IG + L IL+L H+ I +P E+G L L +LDLS+ +KL P +S LT L E+
Sbjct: 649 IGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSS-NKLDGRIPQAMSALTMLTEID 707
Query: 357 MGNS 360
+ N+
Sbjct: 708 LSNN 711
>pdb|4ARN|A Chain A, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARN|B Chain B, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARN|C Chain C, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARN|D Chain D, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARR|A Chain A, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor With The Magic Triangle I3c
pdb|4ARR|B Chain B, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor With The Magic Triangle I3c
Length = 279
Score = 37.0 bits (84), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 35/134 (26%), Positives = 67/134 (50%), Gaps = 8/134 (5%)
Query: 229 LGXXXXXXXXXXTENLSLQIPDPFFEGMTELRVLDLTGFRFHSLPSSLGCLINLRTLS-L 287
LG ++NL + I + + L+ T R +P++L L ++R LS L
Sbjct: 95 LGIVSPTTLIFESDNLGMNITRQHLDRLHGLKRFRFTTRRLTHIPANL--LTDMRNLSHL 152
Query: 288 E---NCLVVDVAIIGDLKKLEILSLKHSSIEQLPREI-GQLTCLKLLDLSNCSKLKEIRP 343
E N + + DL+ LE + + + Q+PR I G++ LK L+L++ ++LK +
Sbjct: 153 ELRANIEEMPSHLFDDLENLESIEFGSNKLRQMPRGIFGKMPKLKQLNLAS-NQLKSVPD 211
Query: 344 NVISNLTRLEELYM 357
+ LT L+++++
Sbjct: 212 GIFDRLTSLQKIWL 225
>pdb|2Z63|A Chain A, Crystal Structure Of The Tv8 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 570
Score = 34.7 bits (78), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 39/138 (28%), Positives = 66/138 (47%), Gaps = 27/138 (19%)
Query: 789 NIHTTQTQPLFDEKV-GLPKLEVLRIDGMDNLRKIWHHQLALDSFTKLKDL---DVEYCD 844
+I T T+ F+ GL LEVL++ G + D FT+L++L D+ C
Sbjct: 427 DISHTHTRVAFNGIFNGLSSLEVLKMAG-----NSFQENFLPDIFTELRNLTFLDLSQC- 480
Query: 845 QLLSIFPSNMLRRLERLEHLAVSECGSIEEIVEISSNCTVETAPGVVFRQLTSLKLHWLP 904
+LE+L A + S++ ++ ++SN +++ P +F +LTSL+ WL
Sbjct: 481 ------------QLEQLSPTAFNSLSSLQ-VLNMASN-QLKSVPDGIFDRLTSLQKIWLH 526
Query: 905 R--LKSFCPGI-HISGWL 919
CP I ++S WL
Sbjct: 527 TNPWDCSCPRIDYLSRWL 544
>pdb|1SQ0|B Chain B, Crystal Structure Of The Complex Of The Wild-Type Von
Willebrand Factor A1 Domain And Glycoprotein Ib Alpha At
2.6 Angstrom Resolution
Length = 288
Score = 34.3 bits (77), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 41/81 (50%), Gaps = 2/81 (2%)
Query: 282 LRTLSLENCLVVDVAIIGDLKKLEILSLKHSSIEQLPREIGQLTCLKLLDLSNCSKLKEI 341
L L+L+ C + + + G L L L L H+ ++ LP L L +LD+S ++L +
Sbjct: 57 LTQLNLDRCELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVS-FNRLTSL 115
Query: 342 RPNVISNLTRLEELYM-GNSF 361
+ L L+ELY+ GN
Sbjct: 116 PLGALRGLGELQELYLKGNEL 136
>pdb|1M0Z|A Chain A, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
pdb|1M0Z|B Chain B, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
Length = 290
Score = 34.3 bits (77), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 41/81 (50%), Gaps = 2/81 (2%)
Query: 282 LRTLSLENCLVVDVAIIGDLKKLEILSLKHSSIEQLPREIGQLTCLKLLDLSNCSKLKEI 341
L L+L+ C + + + G L L L L H+ ++ LP L L +LD+S ++L +
Sbjct: 57 LTQLNLDRCELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVS-FNRLTSL 115
Query: 342 RPNVISNLTRLEELYM-GNSF 361
+ L L+ELY+ GN
Sbjct: 116 PLGALRGLGELQELYLKGNEL 136
>pdb|1M10|B Chain B, Crystal Structure Of The Complex Of Glycoprotein Ib Alpha
And The Von Willebrand Factor A1 Domain
Length = 290
Score = 33.9 bits (76), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 41/81 (50%), Gaps = 2/81 (2%)
Query: 282 LRTLSLENCLVVDVAIIGDLKKLEILSLKHSSIEQLPREIGQLTCLKLLDLSNCSKLKEI 341
L L+L+ C + + + G L L L L H+ ++ LP L L +LD+S ++L +
Sbjct: 57 LTQLNLDRCELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVS-FNRLTSL 115
Query: 342 RPNVISNLTRLEELYM-GNSF 361
+ L L+ELY+ GN
Sbjct: 116 PLGALRGLGELQELYLKGNEL 136
>pdb|1P8V|A Chain A, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Alpha-thrombin At 2.6a
Length = 279
Score = 33.9 bits (76), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 41/81 (50%), Gaps = 2/81 (2%)
Query: 282 LRTLSLENCLVVDVAIIGDLKKLEILSLKHSSIEQLPREIGQLTCLKLLDLSNCSKLKEI 341
L L+L+ C + + + G L L L L H+ ++ LP L L +LD+S ++L +
Sbjct: 57 LTQLNLDRCELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVS-FNRLTSL 115
Query: 342 RPNVISNLTRLEELYM-GNSF 361
+ L L+ELY+ GN
Sbjct: 116 PLGALRGLGELQELYLKGNEL 136
>pdb|1GWB|B Chain B, Structure Of Glycoprotein 1b
pdb|1GWB|A Chain A, Structure Of Glycoprotein 1b
Length = 281
Score = 33.9 bits (76), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 41/81 (50%), Gaps = 2/81 (2%)
Query: 282 LRTLSLENCLVVDVAIIGDLKKLEILSLKHSSIEQLPREIGQLTCLKLLDLSNCSKLKEI 341
L L+L+ C + + + G L L L L H+ ++ LP L L +LD+S ++L +
Sbjct: 58 LTQLNLDRCELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVS-FNRLTSL 116
Query: 342 RPNVISNLTRLEELYM-GNSF 361
+ L L+ELY+ GN
Sbjct: 117 PLGALRGLGELQELYLKGNEL 137
>pdb|2O6Q|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors A29
Length = 270
Score = 33.9 bits (76), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 36/106 (33%), Positives = 54/106 (50%), Gaps = 5/106 (4%)
Query: 257 TELRVLDLTGFRFHSLPS-SLGCLINLRTLSL-ENCL-VVDVAIIGDLKKLEILSLKHSS 313
+ + LDL + SLPS + L LR L L +N L + I +LK LE L + +
Sbjct: 37 ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNK 96
Query: 314 IEQLPREI-GQLTCLKLLDLSNCSKLKEIRPNVISNLTRLEELYMG 358
++ LP + QL L L L ++LK + P V +LT+L L +G
Sbjct: 97 LQALPIGVFDQLVNLAELRLDR-NQLKSLPPRVFDSLTKLTYLSLG 141
>pdb|3P72|A Chain A, Structure Of Platelet Glycoprotein 1b Alpha With A Bound
Peptide Inhibitor
Length = 269
Score = 33.5 bits (75), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 41/81 (50%), Gaps = 2/81 (2%)
Query: 282 LRTLSLENCLVVDVAIIGDLKKLEILSLKHSSIEQLPREIGQLTCLKLLDLSNCSKLKEI 341
L L+L+ C + + + G L L L L H+ ++ LP L L +LD+S ++L +
Sbjct: 57 LTQLNLDRCELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVS-FNRLTSL 115
Query: 342 RPNVISNLTRLEELYM-GNSF 361
+ L L+ELY+ GN
Sbjct: 116 PLGALRGLGELQELYLKGNEL 136
>pdb|1U0N|D Chain D, The Ternary Von Willebrand Factor A1-Glycoprotein Ibalpha-
Botrocetin Complex
Length = 265
Score = 33.5 bits (75), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 41/81 (50%), Gaps = 2/81 (2%)
Query: 282 LRTLSLENCLVVDVAIIGDLKKLEILSLKHSSIEQLPREIGQLTCLKLLDLSNCSKLKEI 341
L L+L+ C + + + G L L L L H+ ++ LP L L +LD+S ++L +
Sbjct: 57 LTQLNLDRCELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVS-FNRLTSL 115
Query: 342 RPNVISNLTRLEELYM-GNSF 361
+ L L+ELY+ GN
Sbjct: 116 PLGALRGLGELQELYLKGNEL 136
>pdb|3RFS|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
pdb|3RFS|B Chain B, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 272
Score = 33.5 bits (75), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 31/105 (29%), Positives = 50/105 (47%), Gaps = 24/105 (22%)
Query: 824 HHQL------ALDSFTKLKDLDVEYCDQLLSIFPSNMLRRLERLEHLAVSECGSIEEIVE 877
H+QL D T L +LD+ Y +QL S+ P + +L +L+ L + +
Sbjct: 142 HNQLQSLPKGVFDKLTNLTELDLSY-NQLQSL-PEGVFDKLTQLKDLRLYQN-------- 191
Query: 878 ISSNCTVETAPGVVFRQLTSLKLHWL--PRLKSFCPGI-HISGWL 919
+++ P VF +LTSL+ WL CPGI ++S W+
Sbjct: 192 -----QLKSVPDGVFDRLTSLQYIWLHDNPWDCTCPGIRYLSEWI 231
Score = 30.4 bits (67), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 30/117 (25%), Positives = 49/117 (41%), Gaps = 23/117 (19%)
Query: 242 ENLSLQIPDPFFEGMTELRVLDLTGFRFHSLPSSLGCLINLRTLSLENCLVVDVAIIGDL 301
EN +PD F+ +T L L+L + SLP + L
Sbjct: 118 ENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPK---------------------GVFDKL 156
Query: 302 KKLEILSLKHSSIEQLPREI-GQLTCLKLLDLSNCSKLKEIRPNVISNLTRLEELYM 357
L L L ++ ++ LP + +LT LK L L ++LK + V LT L+ +++
Sbjct: 157 TNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQ-NQLKSVPDGVFDRLTSLQYIWL 212
Score = 30.0 bits (66), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 37/146 (25%), Positives = 68/146 (46%), Gaps = 11/146 (7%)
Query: 279 LINLRTLSLENCLVVDVAIIGDLKKLEILSLKHSSIEQLPREI-GQLTCLKLLDLSNCSK 337
L N+R L+L + D++ + +L L L L + ++ LP + +LT LK L L ++
Sbjct: 62 LPNVRYLALGGNKLHDISALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVE-NQ 120
Query: 338 LKEIRPNVISNLTRLEELYMGNSFTQWKVEGQSNASLGELKQLSRLTTLEVHIPDAQVMP 397
L+ + V LT L L + ++ Q + G +L+ LT L++ Q +P
Sbjct: 121 LQSLPDGVFDKLTNLTYLNLAHNQLQ-------SLPKGVFDKLTNLTELDLSYNQLQSLP 173
Query: 398 QDLV--FVELERFRICIGDVWSWSDG 421
+ + +L+ R+ + S DG
Sbjct: 174 EGVFDKLTQLKDLRLYQNQLKSVPDG 199
>pdb|4B8C|D Chain D, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|J Chain J, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|K Chain K, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|L Chain L, Nuclease Module Of The Yeast Ccr4-Not Complex
Length = 727
Score = 33.5 bits (75), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 35/64 (54%), Gaps = 1/64 (1%)
Query: 254 EGMTELRVLDLTGFRFHSLPSSLGCLINLRTLSLENCLVVDVAI-IGDLKKLEILSLKHS 312
+ ++ LRVLDL+ R SLP+ LG L+ + +V + G+L L+ L ++ +
Sbjct: 267 KNLSNLRVLDLSHNRLTSLPAELGSCFQLKYFYFFDNMVTTLPWEFGNLCNLQFLGVEGN 326
Query: 313 SIEQ 316
+E+
Sbjct: 327 PLEK 330
>pdb|3ZYN|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
pdb|3ZYN|B Chain B, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
Length = 321
Score = 33.5 bits (75), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 34/116 (29%), Positives = 58/116 (50%), Gaps = 4/116 (3%)
Query: 248 IPDPFFEGMTELRVLDLTGFRF--HSLPSSLGCLINLRTLSLENCLVVDVAIIGDLKKLE 305
IP F + LR LDL + + ++ L+NLR L+L C + D+ + L +LE
Sbjct: 122 IPSYAFNRVPSLRRLDLGELKRLEYISEAAFEGLVNLRYLNLGMCNLKDIPNLTALVRLE 181
Query: 306 ILSLKHSSIEQL-PREIGQLTCLKLLDLSNCSKLKEIRPNVISNLTRLEELYMGNS 360
L L + ++ + P LT L+ L L + +++ I N +L LEEL + ++
Sbjct: 182 ELELSGNRLDLIRPGSFQGLTSLRKLWLMH-AQVATIERNAFDDLKSLEELNLSHN 236
Score = 32.0 bits (71), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 37/74 (50%), Gaps = 3/74 (4%)
Query: 251 PFFEGMTELRVLDLTGFRFHSL-PSSLGCLINLRTLSLENCLVVDVA--IIGDLKKLEIL 307
P + L L+L+G R + P S L +LR L L + V + DLK LE L
Sbjct: 172 PNLTALVRLEELELSGNRLDLIRPGSFQGLTSLRKLWLMHAQVATIERNAFDDLKSLEEL 231
Query: 308 SLKHSSIEQLPREI 321
+L H+++ LP ++
Sbjct: 232 NLSHNNLMSLPHDL 245
>pdb|3ZYO|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
And Immunoglobulin Domain Of Netrin-G Ligand-3
Length = 411
Score = 33.1 bits (74), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 34/116 (29%), Positives = 58/116 (50%), Gaps = 4/116 (3%)
Query: 248 IPDPFFEGMTELRVLDLTGFRF--HSLPSSLGCLINLRTLSLENCLVVDVAIIGDLKKLE 305
IP F + LR LDL + + ++ L+NLR L+L C + D+ + L +LE
Sbjct: 122 IPSYAFNRVPSLRRLDLGELKRLEYISEAAFEGLVNLRYLNLGMCNLKDIPNLTALVRLE 181
Query: 306 ILSLKHSSIEQL-PREIGQLTCLKLLDLSNCSKLKEIRPNVISNLTRLEELYMGNS 360
L L + ++ + P LT L+ L L + +++ I N +L LEEL + ++
Sbjct: 182 ELELSGNRLDLIRPGSFQGLTSLRKLWLMH-AQVATIERNAFDDLKSLEELNLSHN 236
Score = 32.3 bits (72), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 37/74 (50%), Gaps = 3/74 (4%)
Query: 251 PFFEGMTELRVLDLTGFRFHSL-PSSLGCLINLRTLSLENCLVVDVA--IIGDLKKLEIL 307
P + L L+L+G R + P S L +LR L L + V + DLK LE L
Sbjct: 172 PNLTALVRLEELELSGNRLDLIRPGSFQGLTSLRKLWLMHAQVATIERNAFDDLKSLEEL 231
Query: 308 SLKHSSIEQLPREI 321
+L H+++ LP ++
Sbjct: 232 NLSHNNLMSLPHDL 245
>pdb|3ZYI|A Chain A, Netring2 In Complex With Ngl2
Length = 452
Score = 32.3 bits (72), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 33/117 (28%), Positives = 56/117 (47%), Gaps = 6/117 (5%)
Query: 248 IPDPFFEGMTELRVLDLTGFRFHSLPS----SLGCLINLRTLSLENCLVVDVAIIGDLKK 303
IP FE +++LR L L S+PS + L+ L L+ + L
Sbjct: 138 IPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFN 197
Query: 304 LEILSLKHSSIEQLPREIGQLTCLKLLDLSNCSKLKEIRPNVISNLTRLEELYMGNS 360
L+ L+L +I+ +P + L L+ L++S + EIRP L+ L++L++ NS
Sbjct: 198 LKYLNLGMCNIKDMP-NLTPLVGLEELEMSG-NHFPEIRPGSFHGLSSLKKLWVMNS 252
>pdb|1DCE|A Chain A, Crystal Structure Of Rab Geranylgeranyltransferase From
Rat Brain
pdb|1DCE|C Chain C, Crystal Structure Of Rab Geranylgeranyltransferase From
Rat Brain
Length = 567
Score = 32.3 bits (72), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 43/73 (58%), Gaps = 6/73 (8%)
Query: 294 DVAIIGDLKKLEI---LSLKHSSIEQLPREIGQLTCLKLLDLSNCSKLKEIRPNVISNLT 350
D+ ++ L++L + L L H+ + LP + L CL++L S+ + L+ + + ++NL
Sbjct: 452 DLTVLCHLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASD-NALENV--DGVANLP 508
Query: 351 RLEELYMGNSFTQ 363
RL+EL + N+ Q
Sbjct: 509 RLQELLLCNNRLQ 521
>pdb|1LTX|A Chain A, Structure Of Rab Escort Protein-1 In Complex With Rab
Geranylgeranyl Transferase And Isoprenoid
Length = 567
Score = 32.0 bits (71), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 43/73 (58%), Gaps = 6/73 (8%)
Query: 294 DVAIIGDLKKLEI---LSLKHSSIEQLPREIGQLTCLKLLDLSNCSKLKEIRPNVISNLT 350
D+ ++ L++L + L L H+ + LP + L CL++L S+ + L+ + + ++NL
Sbjct: 452 DLTVLCHLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASD-NALENV--DGVANLP 508
Query: 351 RLEELYMGNSFTQ 363
RL+EL + N+ Q
Sbjct: 509 RLQELLLCNNRLQ 521
>pdb|1VDC|A Chain A, Structure Of Nadph Dependent Thioredoxin Reductase
Length = 333
Score = 32.0 bits (71), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 27/51 (52%), Gaps = 3/51 (5%)
Query: 589 ISGVYFRKLHFLKLQHLP---QLTSSGFDLETPTNTQGSNPGIIAEGDPKD 636
+SG++F H + L +L S G+ + P TQ S PG+ A GD +D
Sbjct: 248 VSGLFFAIGHEPATKFLDGGVELDSDGYVVTKPGTTQTSVPGVFAAGDVQD 298
>pdb|1Z6T|A Chain A, Structure Of The Apoptotic Protease-activating Factor 1
Bound To Adp
pdb|1Z6T|B Chain B, Structure Of The Apoptotic Protease-activating Factor 1
Bound To Adp
pdb|1Z6T|C Chain C, Structure Of The Apoptotic Protease-activating Factor 1
Bound To Adp
pdb|1Z6T|D Chain D, Structure Of The Apoptotic Protease-activating Factor 1
Bound To Adp
Length = 591
Score = 31.6 bits (70), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 34/140 (24%), Positives = 62/140 (44%), Gaps = 19/140 (13%)
Query: 33 KKSDFETIGVEIVAKCGGLPIAIKTIANALKNKSPRIWKDAVNQLSNSNPRKI------- 85
KK+D I+ +C G P+ + I L++ P W+ + QL N ++I
Sbjct: 302 KKADLPEQAHSIIKECKGSPLVVSLIGALLRD-FPNRWEYYLKQLQNKQFKRIRKSSSYD 360
Query: 86 -QGMDADLS-SIELSYEFLK---------CKEVKSLFQLCGLLKDGSRIAVDDLLRYVMG 134
+ +D +S S+E+ E +K K+VK ++ +L D V+D+L+ +
Sbjct: 361 YEALDEAMSISVEMLREDIKDYYTDLSILQKDVKVPTKVLCILWDMETEEVEDILQEFVN 420
Query: 135 LRLLTNADTLEAARNRVHTL 154
LL ++ R +H L
Sbjct: 421 KSLLFCDRNGKSFRYYLHDL 440
>pdb|4F0D|A Chain A, Human Artd15PARP16 IN COMPLEX WITH 3-Aminobenzamide
pdb|4F0D|B Chain B, Human Artd15PARP16 IN COMPLEX WITH 3-Aminobenzamide
Length = 277
Score = 31.6 bits (70), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 33/67 (49%), Gaps = 6/67 (8%)
Query: 626 PGIIAEGDPKDFTSLFNERVVFPSLKK-LKLSSINVEKIWLNSFSAIESWGKNLTKLTVE 684
P A GD KDF +L + P+LK+ L+ S N ++ W + SW + LT+
Sbjct: 42 PASYARGDCKDFEALLADASKLPNLKELLQSSGDNHKRAW-----DLVSWILSSKVLTIH 96
Query: 685 KCGRLKF 691
G+ +F
Sbjct: 97 SAGKAEF 103
>pdb|3IZA|A Chain A, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|B Chain B, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|C Chain C, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|D Chain D, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|E Chain E, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|F Chain F, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|G Chain G, Structure Of An Apoptosome-Procaspase-9 Card Complex
Length = 1263
Score = 31.2 bits (69), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 34/140 (24%), Positives = 62/140 (44%), Gaps = 19/140 (13%)
Query: 33 KKSDFETIGVEIVAKCGGLPIAIKTIANALKNKSPRIWKDAVNQLSNSNPRKI------- 85
KK+D I+ +C G P+ + I L++ P W+ + QL N ++I
Sbjct: 308 KKADLPEQAHSIIKECKGSPLVVSLIGALLRD-FPNRWEYYLKQLQNKQFKRIRKSSSYD 366
Query: 86 -QGMDADLS-SIELSYEFLK---------CKEVKSLFQLCGLLKDGSRIAVDDLLRYVMG 134
+ +D +S S+E+ E +K K+VK ++ +L D V+D+L+ +
Sbjct: 367 YEALDEAMSISVEMLREDIKDYYTDLSILQKDVKVPTKVLCILWDMETEEVEDILQEFVN 426
Query: 135 LRLLTNADTLEAARNRVHTL 154
LL ++ R +H L
Sbjct: 427 KSLLFCDRNGKSFRYYLHDL 446
>pdb|1P9A|G Chain G, Crystal Structure Of N-terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-alpha At 1.7 Angstrom
Resolution
pdb|1QYY|A Chain A, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
pdb|1QYY|G Chain G, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
Length = 290
Score = 30.8 bits (68), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 40/81 (49%), Gaps = 2/81 (2%)
Query: 282 LRTLSLENCLVVDVAIIGDLKKLEILSLKHSSIEQLPREIGQLTCLKLLDLSNCSKLKEI 341
L L+L+ + + + G L L L L H+ ++ LP L L +LD+S ++L +
Sbjct: 57 LTQLNLDRAELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVS-FNRLTSL 115
Query: 342 RPNVISNLTRLEELYM-GNSF 361
+ L L+ELY+ GN
Sbjct: 116 PLGALRGLGELQELYLKGNEL 136
>pdb|3RFJ|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 279
Score = 30.8 bits (68), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 32/120 (26%), Positives = 50/120 (41%), Gaps = 23/120 (19%)
Query: 242 ENLSLQIPDPFFEGMTELRVLDLTGFRFHSLPSSLGCLINLRTLSLENCLVVDVAIIGDL 301
EN +PD F+ +T L L L + SLP + L
Sbjct: 118 ENQLQSLPDGVFDKLTNLTYLYLYHNQLQSLPK---------------------GVFDKL 156
Query: 302 KKLEILSLKHSSIEQLPREI-GQLTCLKLLDLSNCSKLKEIRPNVISNLTRLEELYMGNS 360
L L L ++ ++ LP + +LT LK L L N ++LK + V LT L +++ N+
Sbjct: 157 TNLTRLDLDNNQLQSLPEGVFDKLTQLKQLSL-NDNQLKSVPDGVFDRLTSLTHIWLLNN 215
Score = 30.4 bits (67), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 36/132 (27%), Positives = 65/132 (49%), Gaps = 10/132 (7%)
Query: 279 LINLRTLSLENCLVVDVAIIGDLKKLEILSLKHSSIEQLPREI-GQLTCLKLLDLSNCSK 337
L N+R L+L + D++ + +L L L L + ++ LP + +LT LK L L ++
Sbjct: 62 LPNVRYLALGGNKLHDISALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVE-NQ 120
Query: 338 LKEIRPNVISNLTRLEELYMGNSFTQWKVEGQSNASLGELKQLSRLTTLEVHIPDAQVMP 397
L+ + V LT L LY+ ++ Q + G +L+ LT L++ Q +P
Sbjct: 121 LQSLPDGVFDKLTNLTYLYLYHNQLQ-------SLPKGVFDKLTNLTRLDLDNNQLQSLP 173
Query: 398 QDLVFVELERFR 409
+ VF +L + +
Sbjct: 174 EG-VFDKLTQLK 184
>pdb|1OOK|G Chain G, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Human Alpha-thrombin
Length = 290
Score = 30.4 bits (67), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 40/81 (49%), Gaps = 2/81 (2%)
Query: 282 LRTLSLENCLVVDVAIIGDLKKLEILSLKHSSIEQLPREIGQLTCLKLLDLSNCSKLKEI 341
L L+L+ + + + G L L L L H+ ++ LP L L +LD+S ++L +
Sbjct: 57 LTQLNLDRAELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVS-FNRLTSL 115
Query: 342 RPNVISNLTRLEELYM-GNSF 361
+ L L+ELY+ GN
Sbjct: 116 PLGALRGLGELQELYLKGNEL 136
>pdb|3PMH|G Chain G, Mechanism Of Sulfotyrosine-Mediated Glycoprotein Ib
Interaction With Two Distinct Alpha-Thrombin Sites
Length = 290
Score = 30.4 bits (67), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 40/81 (49%), Gaps = 2/81 (2%)
Query: 282 LRTLSLENCLVVDVAIIGDLKKLEILSLKHSSIEQLPREIGQLTCLKLLDLSNCSKLKEI 341
L L+L+ + + + G L L L L H+ ++ LP L L +LD+S ++L +
Sbjct: 57 LTQLNLDRAELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVS-FNRLTSL 115
Query: 342 RPNVISNLTRLEELYM-GNSF 361
+ L L+ELY+ GN
Sbjct: 116 PLGALRGLGELQELYLKGNEL 136
>pdb|2O6R|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B61
Length = 177
Score = 30.0 bits (66), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 28/111 (25%), Positives = 50/111 (45%), Gaps = 23/111 (20%)
Query: 248 IPDPFFEGMTELRVLDLTGFRFHSLPSSLGCLINLRTLSLENCLVVDVAIIGDLKKLEIL 307
+P F+ +T+L L L+ + SLP + L KL IL
Sbjct: 43 LPHGVFDKLTQLTKLSLSQNQIQSLPD---------------------GVFDKLTKLTIL 81
Query: 308 SLKHSSIEQLPREI-GQLTCLKLLDLSNCSKLKEIRPNVISNLTRLEELYM 357
L + ++ LP + +LT LK L L + ++LK + + LT L+++++
Sbjct: 82 YLHENKLQSLPNGVFDKLTQLKELAL-DTNQLKSVPDGIFDRLTSLQKIWL 131
>pdb|3E6J|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor (Vlr)
Rbc36 In Complex With H-Trisaccharide
Length = 229
Score = 30.0 bits (66), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 32/115 (27%), Positives = 49/115 (42%), Gaps = 23/115 (20%)
Query: 248 IPDPFFEGMTELRVLDLTGFRFHSLPSSLGCLINLRTLSLENCLVVDVAIIGDLKKLEIL 307
+P F+ +T+L VLDL + LPS A+ L L+ L
Sbjct: 79 LPVGVFDSLTQLTVLDLGTNQLTVLPS---------------------AVFDRLVHLKEL 117
Query: 308 SLKHSSIEQLPREIGQLTCLKLLDLSNCSKLKEIRPNVISNLTRLEELYM-GNSF 361
+ + + +LPR I +LT L L L ++LK I L+ L Y+ GN +
Sbjct: 118 FMCCNKLTELPRGIERLTHLTHLALDQ-NQLKSIPHGAFDRLSSLTHAYLFGNPW 171
>pdb|2Z80|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
pdb|2Z80|B Chain B, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 353
Score = 29.3 bits (64), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 31/60 (51%), Gaps = 4/60 (6%)
Query: 805 LPKLEVLRIDGMDNLRKIWHHQLALDSFTKLKDLDVEYCDQLLSIFPSNMLRRLERLEHL 864
L KL++LR+ MD KI A T L++L+++ D L + L+ ++ + HL
Sbjct: 148 LTKLQILRVGNMDTFTKIQRKDFA--GLTFLEELEIDASD--LQSYEPKSLKSIQNVSHL 203
>pdb|3LDU|A Chain A, The Crystal Structure Of A Possible Methylase From
Clostridium Difficile 630
Length = 385
Score = 29.3 bits (64), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 22/37 (59%), Gaps = 4/37 (10%)
Query: 68 RIW----KDAVNQLSNSNPRKIQGMDADLSSIELSYE 100
+IW KDA N++ N + KI G D D SI+++ E
Sbjct: 239 KIWWDVRKDAFNKIDNESKFKIYGYDIDEESIDIARE 275
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.137 0.402
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 26,664,985
Number of Sequences: 62578
Number of extensions: 1088538
Number of successful extensions: 2801
Number of sequences better than 100.0: 57
Number of HSP's better than 100.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 39
Number of HSP's that attempted gapping in prelim test: 2694
Number of HSP's gapped (non-prelim): 120
length of query: 937
length of database: 14,973,337
effective HSP length: 108
effective length of query: 829
effective length of database: 8,214,913
effective search space: 6810162877
effective search space used: 6810162877
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 56 (26.2 bits)