Query 002313
Match_columns 937
No_of_seqs 474 out of 4166
Neff 10.3
Searched_HMMs 46136
Date Thu Mar 28 21:16:56 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002313.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/002313hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4658 Apoptotic ATPase [Sign 100.0 8.5E-58 1.9E-62 531.2 23.2 476 3-562 305-798 (889)
2 PLN03210 Resistant to P. syrin 100.0 1.6E-48 3.5E-53 481.8 35.4 549 3-719 339-910 (1153)
3 PLN00113 leucine-rich repeat r 100.0 1.3E-32 2.8E-37 342.4 28.7 513 210-877 69-589 (968)
4 PLN00113 leucine-rich repeat r 100.0 4.2E-32 9E-37 337.8 26.8 533 232-930 69-605 (968)
5 PLN03210 Resistant to P. syrin 99.9 1.3E-21 2.8E-26 243.0 24.9 419 129-613 472-911 (1153)
6 KOG4194 Membrane glycoprotein 99.8 5.3E-22 1.2E-26 207.0 6.0 388 208-709 50-446 (873)
7 KOG0618 Serine/threonine phosp 99.8 8.9E-23 1.9E-27 224.6 -4.3 411 215-769 3-416 (1081)
8 KOG0472 Leucine-rich repeat pr 99.8 1.4E-23 3.1E-28 209.2 -9.9 175 211-397 46-222 (565)
9 KOG0444 Cytoskeletal regulator 99.8 2.1E-22 4.5E-27 211.1 -3.9 331 197-573 40-377 (1255)
10 KOG4194 Membrane glycoprotein 99.8 1.1E-20 2.4E-25 197.3 7.7 336 209-567 101-448 (873)
11 KOG0444 Cytoskeletal regulator 99.8 1.7E-21 3.7E-26 204.3 -2.4 365 208-690 5-376 (1255)
12 PF00931 NB-ARC: NB-ARC domain 99.8 7.3E-20 1.6E-24 194.3 4.4 133 7-141 149-285 (287)
13 KOG0472 Leucine-rich repeat pr 99.8 2.3E-21 4.9E-26 193.6 -11.4 192 208-411 89-283 (565)
14 KOG0618 Serine/threonine phosp 99.7 4.2E-20 9.1E-25 203.8 -6.6 102 232-335 45-147 (1081)
15 KOG0617 Ras suppressor protein 99.5 3.6E-16 7.8E-21 138.1 -3.3 150 209-362 32-185 (264)
16 KOG0617 Ras suppressor protein 99.5 3.4E-16 7.3E-21 138.3 -4.0 167 222-400 23-192 (264)
17 PRK15387 E3 ubiquitin-protein 99.4 1.3E-12 2.8E-17 150.5 14.5 116 258-396 202-317 (788)
18 KOG4237 Extracellular matrix p 99.4 1.2E-14 2.7E-19 145.8 -3.3 289 221-568 57-356 (498)
19 KOG4341 F-box protein containi 99.4 5.2E-15 1.1E-19 149.9 -7.9 298 501-874 138-441 (483)
20 KOG4341 F-box protein containi 99.4 4.2E-14 9.1E-19 143.4 -2.7 67 533-610 139-205 (483)
21 PRK15370 E3 ubiquitin-protein 99.3 4.1E-12 9E-17 147.5 12.0 137 210-361 178-315 (754)
22 PRK15387 E3 ubiquitin-protein 99.3 3.8E-11 8.2E-16 138.5 19.2 179 200-411 212-390 (788)
23 PRK15370 E3 ubiquitin-protein 99.3 1.5E-11 3.3E-16 142.9 15.7 186 200-411 189-375 (754)
24 KOG4658 Apoptotic ATPase [Sign 99.3 1E-12 2.3E-17 154.8 5.6 296 209-568 544-856 (889)
25 KOG4237 Extracellular matrix p 99.1 2.3E-12 5.1E-17 129.7 -4.6 141 195-336 52-199 (498)
26 PF14580 LRR_9: Leucine-rich r 99.0 4.1E-10 8.8E-15 106.0 4.9 130 254-389 16-148 (175)
27 KOG0532 Leucine-rich repeat (L 98.9 5.9E-11 1.3E-15 125.4 -2.7 176 211-400 76-253 (722)
28 PF14580 LRR_9: Leucine-rich r 98.9 2.2E-09 4.8E-14 101.1 6.2 123 264-395 4-127 (175)
29 cd00116 LRR_RI Leucine-rich re 98.8 6.4E-10 1.4E-14 120.4 0.5 137 251-392 17-176 (319)
30 cd00116 LRR_RI Leucine-rich re 98.8 1.8E-09 3.8E-14 117.0 3.9 176 211-393 24-233 (319)
31 KOG1259 Nischarin, modulator o 98.8 8.8E-10 1.9E-14 107.1 -0.3 134 256-398 283-416 (490)
32 KOG1259 Nischarin, modulator o 98.7 1.4E-09 3E-14 105.8 -1.2 121 211-334 285-408 (490)
33 KOG0532 Leucine-rich repeat (L 98.7 8.5E-10 1.8E-14 116.8 -4.1 168 230-411 73-242 (722)
34 PRK15386 type III secretion pr 98.6 1.1E-07 2.3E-12 100.7 7.0 136 675-869 51-187 (426)
35 COG4886 Leucine-rich repeat (L 98.5 1.5E-07 3.2E-12 105.0 5.7 142 258-409 141-283 (394)
36 COG4886 Leucine-rich repeat (L 98.4 1.9E-07 4E-12 104.1 5.8 177 209-398 115-294 (394)
37 KOG3207 Beta-tubulin folding c 98.4 6.7E-08 1.4E-12 99.7 0.8 202 207-410 118-333 (505)
38 PRK15386 type III secretion pr 98.3 1E-06 2.2E-11 93.4 7.8 160 646-872 50-213 (426)
39 PF13855 LRR_8: Leucine rich r 98.3 7.2E-07 1.6E-11 68.8 4.5 58 233-291 2-60 (61)
40 PF13855 LRR_8: Leucine rich r 98.3 9.4E-07 2E-11 68.1 4.3 57 257-313 1-60 (61)
41 PLN03150 hypothetical protein; 98.3 2.2E-06 4.8E-11 100.0 8.9 103 258-361 419-526 (623)
42 KOG3207 Beta-tubulin folding c 98.2 4.6E-07 1E-11 93.6 0.6 180 207-393 143-338 (505)
43 PLN03150 hypothetical protein; 98.1 4.1E-06 8.9E-11 97.7 8.0 104 281-392 419-526 (623)
44 KOG2120 SCF ubiquitin ligase, 98.1 4.9E-08 1.1E-12 95.3 -7.0 65 298-362 206-272 (419)
45 PF12799 LRR_4: Leucine Rich r 98.1 4.6E-06 9.9E-11 58.5 3.7 41 257-297 1-41 (44)
46 KOG1859 Leucine-rich repeat pr 98.0 5.4E-08 1.2E-12 106.2 -9.5 175 209-395 108-293 (1096)
47 KOG2120 SCF ubiquitin ligase, 98.0 3E-07 6.6E-12 89.9 -4.7 118 647-773 233-351 (419)
48 KOG0531 Protein phosphatase 1, 97.8 2.1E-06 4.6E-11 95.7 -1.8 106 254-362 92-198 (414)
49 KOG1947 Leucine rich repeat pr 97.8 2.9E-06 6.4E-11 97.8 -1.4 168 674-874 267-442 (482)
50 KOG0531 Protein phosphatase 1, 97.8 2.4E-06 5.2E-11 95.2 -2.1 170 212-396 74-247 (414)
51 KOG1947 Leucine rich repeat pr 97.8 1.4E-06 3.1E-11 100.4 -4.2 123 593-750 186-310 (482)
52 KOG3665 ZYG-1-like serine/thre 97.8 9.9E-06 2.1E-10 94.0 2.2 125 209-334 121-259 (699)
53 KOG3665 ZYG-1-like serine/thre 97.7 1.7E-05 3.6E-10 92.1 3.6 130 231-361 121-261 (699)
54 PF12799 LRR_4: Leucine Rich r 97.7 4.8E-05 1E-09 53.3 3.7 39 303-342 2-40 (44)
55 KOG1909 Ran GTPase-activating 97.5 1E-05 2.2E-10 81.6 -1.7 12 473-484 240-251 (382)
56 KOG1859 Leucine-rich repeat pr 97.5 3.3E-06 7.2E-11 92.7 -6.8 123 211-336 165-290 (1096)
57 KOG1909 Ran GTPase-activating 97.4 2.8E-05 6E-10 78.6 -0.7 112 278-393 90-225 (382)
58 KOG1644 U2-associated snRNP A' 97.3 0.00042 9.1E-09 64.8 5.8 119 213-334 22-149 (233)
59 KOG2982 Uncharacterized conser 97.2 4.3E-05 9.4E-10 75.2 -1.6 37 349-391 120-156 (418)
60 KOG1644 U2-associated snRNP A' 97.1 0.00084 1.8E-08 62.8 5.7 103 281-390 43-149 (233)
61 KOG4579 Leucine-rich repeat (L 97.0 9E-05 1.9E-09 64.4 -2.0 90 254-344 50-141 (177)
62 KOG4579 Leucine-rich repeat (L 96.8 0.00019 4E-09 62.5 -1.3 90 230-320 51-141 (177)
63 KOG2982 Uncharacterized conser 96.4 0.00071 1.5E-08 67.0 -0.6 67 646-716 197-263 (418)
64 KOG2739 Leucine-rich acidic nu 96.3 0.002 4.4E-08 63.2 2.2 55 280-334 43-100 (260)
65 KOG2123 Uncharacterized conser 96.2 0.00031 6.7E-09 68.7 -3.9 100 256-356 18-123 (388)
66 COG5238 RNA1 Ran GTPase-activa 96.0 0.0047 1E-07 60.5 3.1 86 255-341 28-135 (388)
67 PF00560 LRR_1: Leucine Rich R 95.6 0.0059 1.3E-07 35.4 1.1 22 258-279 1-22 (22)
68 KOG2739 Leucine-rich acidic nu 95.6 0.0082 1.8E-07 59.1 2.6 83 254-336 62-154 (260)
69 PF13306 LRR_5: Leucine rich r 95.5 0.047 1E-06 49.5 7.4 106 248-359 3-112 (129)
70 PF00560 LRR_1: Leucine Rich R 95.5 0.0054 1.2E-07 35.6 0.7 21 303-323 1-21 (22)
71 KOG2123 Uncharacterized conser 95.5 0.001 2.2E-08 65.3 -3.9 97 231-331 18-123 (388)
72 KOG3864 Uncharacterized conser 95.2 0.0039 8.5E-08 58.6 -0.9 69 803-873 122-190 (221)
73 KOG3864 Uncharacterized conser 94.8 0.0071 1.5E-07 57.0 -0.2 71 696-773 119-189 (221)
74 PF13306 LRR_5: Leucine rich r 94.6 0.087 1.9E-06 47.7 6.4 115 230-352 10-128 (129)
75 COG5238 RNA1 Ran GTPase-activa 93.9 0.025 5.5E-07 55.6 1.3 123 276-398 26-174 (388)
76 PF13504 LRR_7: Leucine rich r 93.6 0.038 8.3E-07 29.6 1.1 17 919-936 1-17 (17)
77 PF13504 LRR_7: Leucine rich r 93.4 0.058 1.2E-06 28.9 1.6 16 258-273 2-17 (17)
78 KOG0473 Leucine-rich repeat pr 89.7 0.014 3.1E-07 55.9 -5.6 83 254-336 39-122 (326)
79 smart00370 LRR Leucine-rich re 88.0 0.37 8.1E-06 29.2 1.7 20 301-320 1-20 (26)
80 smart00369 LRR_TYP Leucine-ric 88.0 0.37 8.1E-06 29.2 1.7 20 301-320 1-20 (26)
81 KOG0473 Leucine-rich repeat pr 86.6 0.029 6.3E-07 53.9 -5.6 86 275-362 37-123 (326)
82 smart00370 LRR Leucine-rich re 83.7 0.8 1.7E-05 27.7 1.7 21 256-276 1-21 (26)
83 smart00369 LRR_TYP Leucine-ric 83.7 0.8 1.7E-05 27.7 1.7 21 256-276 1-21 (26)
84 TIGR03015 pepcterm_ATPase puta 81.9 5.8 0.00013 41.2 8.5 71 7-77 184-266 (269)
85 PRK04841 transcriptional regul 81.0 8.6 0.00019 48.3 11.1 146 14-187 185-332 (903)
86 smart00367 LRR_CC Leucine-rich 80.9 0.82 1.8E-05 27.7 1.0 16 918-933 1-16 (26)
87 PRK00080 ruvB Holliday junctio 78.5 5 0.00011 43.2 6.8 108 7-128 172-282 (328)
88 TIGR00635 ruvB Holliday juncti 71.1 48 0.001 35.1 12.0 53 7-60 151-203 (305)
89 smart00364 LRR_BAC Leucine-ric 61.5 5.1 0.00011 24.2 1.2 17 303-319 3-19 (26)
90 smart00365 LRR_SD22 Leucine-ri 57.7 8.9 0.00019 23.3 1.8 10 282-291 4-13 (26)
91 KOG4308 LRR-containing protein 49.9 0.3 6.4E-06 54.8 -9.9 132 258-394 145-303 (478)
92 PF13516 LRR_6: Leucine Rich r 49.5 10 0.00023 22.2 1.2 11 281-291 3-13 (24)
93 smart00368 LRR_RI Leucine rich 36.6 26 0.00056 21.6 1.6 12 258-269 3-14 (28)
94 cd00923 Cyt_c_Oxidase_Va Cytoc 26.0 2.4E+02 0.0051 23.8 5.7 60 19-78 22-87 (103)
95 PF02284 COX5A: Cytochrome c o 24.2 1.4E+02 0.0031 25.3 4.3 49 30-78 40-90 (108)
96 PF14164 YqzH: YqzH-like prote 23.7 1.6E+02 0.0035 22.5 4.0 35 11-45 22-58 (64)
97 KOG4308 LRR-containing protein 21.3 6 0.00013 44.6 -5.6 130 233-363 145-303 (478)
No 1
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=100.00 E-value=8.5e-58 Score=531.18 Aligned_cols=476 Identities=26% Similarity=0.380 Sum_probs=344.7
Q ss_pred cCCCCCcccCCCCCHHHHHHHHHHHhCCC--CCCCchhHHHHHHHHhcCCCchHHHHHHHHhcCC-ChhHHHHHHHHhhc
Q 002313 3 SYEYSEDFLDWLLSNEEASHLFEKIVGHS--AKKSDFETIGVEIVAKCGGLPIAIKTIANALKNK-SPRIWKDAVNQLSN 79 (937)
Q Consensus 3 ~~~~~~~~~l~~L~~~~~~~lf~~~~~~~--~~~~~~~~i~~~i~~kc~GlPLai~~ig~~L~~~-~~~~W~~~l~~l~~ 79 (937)
+|++.+.+++++|+++|||+||+++||.. ..++.+.++|++||+||+|+|||+++||+.|+.| +.++|+++.+.+.+
T Consensus 305 ~m~~~~~~~v~~L~~~eaW~LF~~~v~~~~~~~~~~i~~lak~v~~kC~GLPLAl~viG~~ma~K~t~~eW~~~~~~l~s 384 (889)
T KOG4658|consen 305 AMGVDYPIEVECLTPEEAWDLFQKKVGPNTLGSHPDIEELAKEVAEKCGGLPLALNVLGGLLACKKTVQEWRRALNVLKS 384 (889)
T ss_pred cccCCccccccccCccccHHHHHHhhccccccccccHHHHHHHHHHHhCChHHHHHHHHHHhcCCCcHHHHHHHHccccc
Confidence 48899999999999999999999999654 3456699999999999999999999999999999 88899999999998
Q ss_pred CCCCCccccccc-cccccccccccCchhHHHHHHHhcCCCCCCcccHHHHHHHHhhcccccCcchHHHHHHHHHHHHHHH
Q 002313 80 SNPRKIQGMDAD-LSSIELSYEFLKCKEVKSLFQLCGLLKDGSRIAVDDLLRYVMGLRLLTNADTLEAARNRVHTLIDNL 158 (937)
Q Consensus 80 ~~~~~~~~~~~~-~~~l~~sY~~L~~~~lk~cfl~~~~fp~~~~i~~~~li~~w~a~g~~~~~~~~~~~~~~~~~~~~~L 158 (937)
+...+..++++. +++|++|||+||.+ +|.||+|||+||+||+|++++||.+|+||||++.....+.+++.+++|+.+|
T Consensus 385 ~~~~~~~~~~~~i~~iLklSyd~L~~~-lK~CFLycalFPED~~I~~e~Li~yWiaEGfi~~~~~~~~~~d~G~~~i~~L 463 (889)
T KOG4658|consen 385 SLAADFSGMEESILPILKLSYDNLPEE-LKSCFLYCALFPEDYEIKKEKLIEYWIAEGFIDPLDGGETAEDVGYDYIEEL 463 (889)
T ss_pred cccCCCCchhhhhHHhhhccHhhhhHH-HHHHHHhhccCCcccccchHHHHHHHHhccCcCccccccchhcchHHHHHHH
Confidence 866666666666 99999999999965 9999999999999999999999999999999988676788899999999999
Q ss_pred hhcccccccC---CCCceeeehhhHHHHHHHHh-----hccEEEecccCcchhhhh-hccCCCcEEEccCCCCccCCccc
Q 002313 159 KSASLLFDGD---SEDHAKMHRIIHAIAVSIAA-----EKLLFNIQNVADLKEELD-KIDEAPTAISIPFRGIYELPERL 229 (937)
Q Consensus 159 ~~~~~~~~~~---~~~~~~mhd~i~~la~~~~~-----~e~~~~~~~~~~~~~~~~-~~~~~l~~l~l~~~~~~~l~~~~ 229 (937)
+++++++..+ +..+|+|||+||++|.++++ ++. ..+..+......|. ......|++++.++.+..++...
T Consensus 464 V~~~Ll~~~~~~~~~~~~kmHDvvRe~al~ias~~~~~~e~-~iv~~~~~~~~~~~~~~~~~~rr~s~~~~~~~~~~~~~ 542 (889)
T KOG4658|consen 464 VRASLLIEERDEGRKETVKMHDVVREMALWIASDFGKQEEN-QIVSDGVGLSEIPQVKSWNSVRRMSLMNNKIEHIAGSS 542 (889)
T ss_pred HHHHHHhhcccccceeEEEeeHHHHHHHHHHhccccccccc-eEEECCcCccccccccchhheeEEEEeccchhhccCCC
Confidence 9999998764 45789999999999999999 555 33443333333444 44568999999999999999998
Q ss_pred CCCccceeeecCCcc-cccCChhhhcCCCCccEEEecCCc-CcccCccccCCCCCCEEEccCCcccCcccccCCCCCcEE
Q 002313 230 GFLKLKLFLFFTENL-SLQIPDPFFEGMTELRVLDLTGFR-FHSLPSSLGCLINLRTLSLENCLVVDVAIIGDLKKLEIL 307 (937)
Q Consensus 230 ~~~~L~~L~l~~~~~-~~~~~~~~~~~l~~Lr~L~L~~~~-~~~lp~~i~~l~~Lr~L~L~~~~~~~l~~i~~L~~L~~L 307 (937)
..++|++|.+.++.. ...++..+|..+++||||||++|. +.++|..|+.|.|||||+++++.
T Consensus 543 ~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~---------------- 606 (889)
T KOG4658|consen 543 ENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTG---------------- 606 (889)
T ss_pred CCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCC----------------
Confidence 888999999999873 667888889999999999999875 57889888887777777777665
Q ss_pred ecccCcCcccCcccccCccCCEEEecCCCCCcccChhhhcCCCCCcEEEcCCCcccceecCCCCCChhhhcCCCCCCeEE
Q 002313 308 SLKHSSIEQLPREIGQLTCLKLLDLSNCSKLKEIRPNVISNLTRLEELYMGNSFTQWKVEGQSNASLGELKQLSRLTTLE 387 (937)
Q Consensus 308 ~L~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~ 387 (937)
++.+|.++++|..|.+|++..+..+..+| +++..|.+||+|.+..... .......+++.++++|+.+.
T Consensus 607 ------I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~-~i~~~L~~Lr~L~l~~s~~-----~~~~~~l~el~~Le~L~~ls 674 (889)
T KOG4658|consen 607 ------ISHLPSGLGNLKKLIYLNLEVTGRLESIP-GILLELQSLRVLRLPRSAL-----SNDKLLLKELENLEHLENLS 674 (889)
T ss_pred ------ccccchHHHHHHhhheecccccccccccc-chhhhcccccEEEeecccc-----ccchhhHHhhhcccchhhhe
Confidence 55666666666666666666655444443 3245566666666543321 11133445555666666555
Q ss_pred eecCCCCCCCccccccccceeEEEecCcCCCCCCcCCcceEEEecccccchhhhHHHHhhcccccccccccChhhhhhcc
Q 002313 388 VHIPDAQVMPQDLVFVELERFRICIGDVWSWSDGYETSKTLKLQLNNSTYLGYGMKMLLKRTEDLHLDELAGFKNVVHEL 467 (937)
Q Consensus 388 l~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l 467 (937)
................+ .....+.+.+.+ .........+
T Consensus 675 ~~~~s~~~~e~l~~~~~----------------------------------------L~~~~~~l~~~~-~~~~~~~~~~ 713 (889)
T KOG4658|consen 675 ITISSVLLLEDLLGMTR----------------------------------------LRSLLQSLSIEG-CSKRTLISSL 713 (889)
T ss_pred eecchhHhHhhhhhhHH----------------------------------------HHHHhHhhhhcc-cccceeeccc
Confidence 53322200000000111 111112222222 1111222333
Q ss_pred cchhhcccCcEEEeecCCceEEEEccC--Ccccc-ccccceecccccccccccccccccCCCCCccCCCccEEEEecCCC
Q 002313 468 DDEEGFARLRHLHVHNGPEILHILNSD--GRVGT-FPLLESLFLHNLINLEKVCDGKVRLNEDDKSFSNLRIIKVEGCHR 544 (937)
Q Consensus 468 ~~~~~~~~L~~L~l~~~~~~~~~~~~~--~~~~~-~p~L~~L~l~~~~~l~~~~~~~~~~~~~~~~l~~L~~L~l~~C~~ 544 (937)
.. +.+|+.|.+.+|...+...... ..... ||++..+.+.+|..++...... ..|+|+.|++.+|+.
T Consensus 714 ~~---l~~L~~L~i~~~~~~e~~~~~~~~~~~~~~f~~l~~~~~~~~~~~r~l~~~~--------f~~~L~~l~l~~~~~ 782 (889)
T KOG4658|consen 714 GS---LGNLEELSILDCGISEIVIEWEESLIVLLCFPNLSKVSILNCHMLRDLTWLL--------FAPHLTSLSLVSCRL 782 (889)
T ss_pred cc---ccCcceEEEEcCCCchhhcccccccchhhhHHHHHHHHhhccccccccchhh--------ccCcccEEEEecccc
Confidence 33 8889999999887654321111 11123 7788888888887777653333 348888999988888
Q ss_pred cccccchhHHHhhccccE
Q 002313 545 VKHLFPFSLVKNLLQLQK 562 (937)
Q Consensus 545 L~~l~~~~~~~~l~~L~~ 562 (937)
++++.+ ....+..+++
T Consensus 783 ~e~~i~--~~k~~~~l~~ 798 (889)
T KOG4658|consen 783 LEDIIP--KLKALLELKE 798 (889)
T ss_pred cccCCC--HHHHhhhccc
Confidence 887654 3334444443
No 2
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=100.00 E-value=1.6e-48 Score=481.79 Aligned_cols=549 Identities=21% Similarity=0.302 Sum_probs=379.7
Q ss_pred cCCCCCcccCCCCCHHHHHHHHHHHhC-CCCCCCchhHHHHHHHHhcCCCchHHHHHHHHhcCCChhHHHHHHHHhhcCC
Q 002313 3 SYEYSEDFLDWLLSNEEASHLFEKIVG-HSAKKSDFETIGVEIVAKCGGLPIAIKTIANALKNKSPRIWKDAVNQLSNSN 81 (937)
Q Consensus 3 ~~~~~~~~~l~~L~~~~~~~lf~~~~~-~~~~~~~~~~i~~~i~~kc~GlPLai~~ig~~L~~~~~~~W~~~l~~l~~~~ 81 (937)
.++++++|+|+.|+++|||+||+++|+ +..+++++++++++||++|+|+||||+++|+.|++++.++|+++++++++..
T Consensus 339 ~~~~~~~~~v~~l~~~ea~~LF~~~Af~~~~~~~~~~~l~~~iv~~c~GLPLAl~vlgs~L~~k~~~~W~~~l~~L~~~~ 418 (1153)
T PLN03210 339 AHGIDHIYEVCLPSNELALEMFCRSAFKKNSPPDGFMELASEVALRAGNLPLGLNVLGSYLRGRDKEDWMDMLPRLRNGL 418 (1153)
T ss_pred hcCCCeEEEecCCCHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhCCCcHHHHHHHHHHcCCCHHHHHHHHHHHHhCc
Confidence 577899999999999999999999995 4456678999999999999999999999999999999999999999987533
Q ss_pred CCCccccccccccccccccccCchhHHHHHHHhcCCCCCCcccHHHHHHHHhhcccccCcchHHHHHHHHHHHHHHHhhc
Q 002313 82 PRKIQGMDADLSSIELSYEFLKCKEVKSLFQLCGLLKDGSRIAVDDLLRYVMGLRLLTNADTLEAARNRVHTLIDNLKSA 161 (937)
Q Consensus 82 ~~~~~~~~~~~~~l~~sY~~L~~~~lk~cfl~~~~fp~~~~i~~~~li~~w~a~g~~~~~~~~~~~~~~~~~~~~~L~~~ 161 (937)
.. +...+|++||++|+.++.|.||+|||+||+++.++ .+..|.|.+.+... .-++.|+++
T Consensus 419 ~~------~I~~~L~~SYd~L~~~~~k~~Fl~ia~ff~~~~~~---~v~~~l~~~~~~~~-----------~~l~~L~~k 478 (1153)
T PLN03210 419 DG------KIEKTLRVSYDGLNNKKDKAIFRHIACLFNGEKVN---DIKLLLANSDLDVN-----------IGLKNLVDK 478 (1153)
T ss_pred cH------HHHHHHHHhhhccCccchhhhhheehhhcCCCCHH---HHHHHHHhcCCCch-----------hChHHHHhc
Confidence 21 23789999999998644799999999999986553 36778877655321 127889999
Q ss_pred ccccccCCCCceeeehhhHHHHHHHHhhcc------EEEecccCcchhhhh--hccCCCcEEEccCCCCccC--Cc-cc-
Q 002313 162 SLLFDGDSEDHAKMHRIIHAIAVSIAAEKL------LFNIQNVADLKEELD--KIDEAPTAISIPFRGIYEL--PE-RL- 229 (937)
Q Consensus 162 ~~~~~~~~~~~~~mhd~i~~la~~~~~~e~------~~~~~~~~~~~~~~~--~~~~~l~~l~l~~~~~~~l--~~-~~- 229 (937)
++++.. ...++|||++|+||+.+++.+. .+... ..++..... ...++++.+++....+..+ .. .+
T Consensus 479 sLi~~~--~~~~~MHdLl~~~~r~i~~~~~~~~~~r~~l~~-~~di~~vl~~~~g~~~v~~i~l~~~~~~~~~i~~~aF~ 555 (1153)
T PLN03210 479 SLIHVR--EDIVEMHSLLQEMGKEIVRAQSNEPGEREFLVD-AKDICDVLEDNTGTKKVLGITLDIDEIDELHIHENAFK 555 (1153)
T ss_pred CCEEEc--CCeEEhhhHHHHHHHHHHHhhcCCCCcceeEeC-HHHHHHHHHhCcccceeeEEEeccCccceeeecHHHHh
Confidence 999765 3569999999999999997763 11111 111222222 2345667777665555432 11 12
Q ss_pred CCCccceeeecCCc------ccccCChhhhcCCCCccEEEecCCcCcccCccccCCCCCCEEEccCCcccCc-ccccCCC
Q 002313 230 GFLKLKLFLFFTEN------LSLQIPDPFFEGMTELRVLDLTGFRFHSLPSSLGCLINLRTLSLENCLVVDV-AIIGDLK 302 (937)
Q Consensus 230 ~~~~L~~L~l~~~~------~~~~~~~~~~~~l~~Lr~L~L~~~~~~~lp~~i~~l~~Lr~L~L~~~~~~~l-~~i~~L~ 302 (937)
++.+|+.|.+..+. ....+|+.+..-..+||+|++.++.+..+|..+ ...+|+.|+++++.+..+ ..+..++
T Consensus 556 ~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~~lP~~f-~~~~L~~L~L~~s~l~~L~~~~~~l~ 634 (1153)
T PLN03210 556 GMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLRCMPSNF-RPENLVKLQMQGSKLEKLWDGVHSLT 634 (1153)
T ss_pred cCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCCCCCCcC-CccCCcEEECcCccccccccccccCC
Confidence 67888888875432 223456554322356888888888888888777 468888888888887776 6677888
Q ss_pred CCcEEecccC-cCcccCcccccCccCCEEEecCCCCCcccChhhhcCCCCCcEEEcCCCcccceecCCCCCChhhhcCCC
Q 002313 303 KLEILSLKHS-SIEQLPREIGQLTCLKLLDLSNCSKLKEIRPNVISNLTRLEELYMGNSFTQWKVEGQSNASLGELKQLS 381 (937)
Q Consensus 303 ~L~~L~L~~~-~l~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~ 381 (937)
+|++|+++++ .+..+| .++.+++|++|++++|..+..+|.. ++++++|+.|++++|... ...+... +++
T Consensus 635 ~Lk~L~Ls~~~~l~~ip-~ls~l~~Le~L~L~~c~~L~~lp~s-i~~L~~L~~L~L~~c~~L-------~~Lp~~i-~l~ 704 (1153)
T PLN03210 635 GLRNIDLRGSKNLKEIP-DLSMATNLETLKLSDCSSLVELPSS-IQYLNKLEDLDMSRCENL-------EILPTGI-NLK 704 (1153)
T ss_pred CCCEEECCCCCCcCcCC-ccccCCcccEEEecCCCCccccchh-hhccCCCCEEeCCCCCCc-------CccCCcC-CCC
Confidence 8888888876 466676 4778888888888888888888876 788888888888876422 1111111 456
Q ss_pred CCCeEEeecCCC-CCCCccccccccceeEEEecCcCCCCCCcCCcceEEEecccccchhhhHHHHhhcccccccccccCh
Q 002313 382 RLTTLEVHIPDA-QVMPQDLVFVELERFRICIGDVWSWSDGYETSKTLKLQLNNSTYLGYGMKMLLKRTEDLHLDELAGF 460 (937)
Q Consensus 382 ~L~~L~l~~~~~-~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 460 (937)
+|+.|+++++.. ..+|. ...+|+.|++.+.. .
T Consensus 705 sL~~L~Lsgc~~L~~~p~----------------------------------------------~~~nL~~L~L~~n~-i 737 (1153)
T PLN03210 705 SLYRLNLSGCSRLKSFPD----------------------------------------------ISTNISWLDLDETA-I 737 (1153)
T ss_pred CCCEEeCCCCCCcccccc----------------------------------------------ccCCcCeeecCCCc-c
Confidence 666666665421 11110 01233333333322 1
Q ss_pred hhhhhcccchhhcccCcEEEeecCCceEEEEccCCccccccccceecccccccccccccccccC-CCCCccCCCccEEEE
Q 002313 461 KNVVHELDDEEGFARLRHLHVHNGPEILHILNSDGRVGTFPLLESLFLHNLINLEKVCDGKVRL-NEDDKSFSNLRIIKV 539 (937)
Q Consensus 461 ~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~l~~~~~~~~~~-~~~~~~l~~L~~L~l 539 (937)
..++..+ .+++|++|.+.++.....+ ....+. +......++|+.|++
T Consensus 738 ~~lP~~~----~l~~L~~L~l~~~~~~~l~----------------------------~~~~~l~~~~~~~~~sL~~L~L 785 (1153)
T PLN03210 738 EEFPSNL----RLENLDELILCEMKSEKLW----------------------------ERVQPLTPLMTMLSPSLTRLFL 785 (1153)
T ss_pred ccccccc----cccccccccccccchhhcc----------------------------ccccccchhhhhccccchheeC
Confidence 1111111 1445555555443221110 000000 000123468888888
Q ss_pred ecCCCcccccchhHHHhhccccEEEEcccccchhhhccccccccccCCccccccccccceeeccCCCCccccccCCCCCc
Q 002313 540 EGCHRVKHLFPFSLVKNLLQLQKVKVTDCTNLKLIVGKESENSAHKNGSISGVYFRKLHFLKLQHLPQLTSSGFDLETPT 619 (937)
Q Consensus 540 ~~C~~L~~l~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~i~~~~~~~L~~L~l~~c~~L~~~~~~~~~~~ 619 (937)
++|+.+..+|. .+.++++|+.|+|++|..++.++.. + .+++|+.|++++|.++..++..
T Consensus 786 s~n~~l~~lP~--si~~L~~L~~L~Ls~C~~L~~LP~~-----------~---~L~sL~~L~Ls~c~~L~~~p~~----- 844 (1153)
T PLN03210 786 SDIPSLVELPS--SIQNLHKLEHLEIENCINLETLPTG-----------I---NLESLESLDLSGCSRLRTFPDI----- 844 (1153)
T ss_pred CCCCCccccCh--hhhCCCCCCEEECCCCCCcCeeCCC-----------C---CccccCEEECCCCCcccccccc-----
Confidence 88888888874 4678888999999888888776521 1 5788999999999888775542
Q ss_pred ccCCCCCCccccCCCCCccccccccccCCCcceeeccCcccceeccCCcccccccCCCccEEEEeccCCccccchHHHHh
Q 002313 620 NTQGSNPGIIAEGDPKDFTSLFNERVVFPSLKKLKLSSINVEKIWLNSFSAIESWGKNLTKLTVEKCGRLKFLFSSSMVN 699 (937)
Q Consensus 620 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~l~~~~~~~~~~~~~~l~~L~~L~i~~c~~l~~l~~~~~~~ 699 (937)
.++|+.|++++++++.+|.. ...+++|+.|++.+|++++.++. ...
T Consensus 845 ---------------------------~~nL~~L~Ls~n~i~~iP~s-----i~~l~~L~~L~L~~C~~L~~l~~--~~~ 890 (1153)
T PLN03210 845 ---------------------------STNISDLNLSRTGIEEVPWW-----IEKFSNLSFLDMNGCNNLQRVSL--NIS 890 (1153)
T ss_pred ---------------------------ccccCEeECCCCCCccChHH-----HhcCCCCCEEECCCCCCcCccCc--ccc
Confidence 46899999999988887743 24678999999999999988754 456
Q ss_pred hccccceeeeccccchHHHh
Q 002313 700 GLEQLQQLDISHCKSMNEVI 719 (937)
Q Consensus 700 ~l~~L~~L~i~~c~~l~~~~ 719 (937)
.+++|+.|++++|.++..+.
T Consensus 891 ~L~~L~~L~l~~C~~L~~~~ 910 (1153)
T PLN03210 891 KLKHLETVDFSDCGALTEAS 910 (1153)
T ss_pred cccCCCeeecCCCccccccc
Confidence 78899999999998887654
No 3
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=1.3e-32 Score=342.40 Aligned_cols=513 Identities=18% Similarity=0.152 Sum_probs=345.9
Q ss_pred CCCcEEEccCCCCccC-Cccc-CCCccceeeecCCcccccCChhhhcCCCCccEEEecCCcCc-ccCccccCCCCCCEEE
Q 002313 210 EAPTAISIPFRGIYEL-PERL-GFLKLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFH-SLPSSLGCLINLRTLS 286 (937)
Q Consensus 210 ~~l~~l~l~~~~~~~l-~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~-~lp~~i~~l~~Lr~L~ 286 (937)
.+++.++++++.+... +..+ .+++|++|++++|.+.+.+|.++|..+++||+|++++|.+. .+|. +.+++|++|+
T Consensus 69 ~~v~~L~L~~~~i~~~~~~~~~~l~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~--~~l~~L~~L~ 146 (968)
T PLN00113 69 SRVVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPR--GSIPNLETLD 146 (968)
T ss_pred CcEEEEEecCCCccccCChHHhCCCCCCEEECCCCccCCcCChHHhccCCCCCEEECcCCccccccCc--cccCCCCEEE
Confidence 4688999998887653 4444 78999999999999888899998889999999999999987 4564 5789999999
Q ss_pred ccCCcccC-c-ccccCCCCCcEEecccCcCc-ccCcccccCccCCEEEecCCCCCcccChhhhcCCCCCcEEEcCCCccc
Q 002313 287 LENCLVVD-V-AIIGDLKKLEILSLKHSSIE-QLPREIGQLTCLKLLDLSNCSKLKEIRPNVISNLTRLEELYMGNSFTQ 363 (937)
Q Consensus 287 L~~~~~~~-l-~~i~~L~~L~~L~L~~~~l~-~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~l~~L~~L~~L~l~~~~~~ 363 (937)
+++|.+.. + ..++++++|++|++++|.+. .+|..++++++|++|++++|.....+|.. ++++++|++|++++|.+.
T Consensus 147 Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~-l~~l~~L~~L~L~~n~l~ 225 (968)
T PLN00113 147 LSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRE-LGQMKSLKWIYLGYNNLS 225 (968)
T ss_pred CcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChH-HcCcCCccEEECcCCccC
Confidence 99998863 3 67999999999999999875 78889999999999999997755567766 899999999999988654
Q ss_pred ceecCCCCCChhhhcCCCCCCeEEeecCCCCC-CCccc-cccccceeEEEecCcCCCCCCcCCcceEEEecccccchhhh
Q 002313 364 WKVEGQSNASLGELKQLSRLTTLEVHIPDAQV-MPQDL-VFVELERFRICIGDVWSWSDGYETSKTLKLQLNNSTYLGYG 441 (937)
Q Consensus 364 ~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~-~~~~~-~~~~L~~l~l~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~ 441 (937)
...+..+.++++|+.|+++++.... .|..+ ...+
T Consensus 226 -------~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~------------------------------------- 261 (968)
T PLN00113 226 -------GEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKN------------------------------------- 261 (968)
T ss_pred -------CcCChhHhcCCCCCEEECcCceeccccChhHhCCCC-------------------------------------
Confidence 3455678888999999998886542 23222 2333
Q ss_pred HHHHhhcccccccccccChhhhhhcccchhhcccCcEEEeecCCceEEEEccCCccccccccceeccccccccccccccc
Q 002313 442 MKMLLKRTEDLHLDELAGFKNVVHELDDEEGFARLRHLHVHNGPEILHILNSDGRVGTFPLLESLFLHNLINLEKVCDGK 521 (937)
Q Consensus 442 ~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~l~~~~~~~ 521 (937)
|++|++.++......+..+.. +++|++|+++++.....+ +.....+++|+.|++.++.-....
T Consensus 262 -------L~~L~L~~n~l~~~~p~~l~~---l~~L~~L~Ls~n~l~~~~---p~~~~~l~~L~~L~l~~n~~~~~~---- 324 (968)
T PLN00113 262 -------LQYLFLYQNKLSGPIPPSIFS---LQKLISLDLSDNSLSGEI---PELVIQLQNLEILHLFSNNFTGKI---- 324 (968)
T ss_pred -------CCEEECcCCeeeccCchhHhh---ccCcCEEECcCCeeccCC---ChhHcCCCCCcEEECCCCccCCcC----
Confidence 334444333222222223333 667777777766332221 222245667777777665321111
Q ss_pred ccCCCCCccCCCccEEEEecCCCcccccchhHHHhhccccEEEEcccccchhhhccccccccccCCccccccccccceee
Q 002313 522 VRLNEDDKSFSNLRIIKVEGCHRVKHLFPFSLVKNLLQLQKVKVTDCTNLKLIVGKESENSAHKNGSISGVYFRKLHFLK 601 (937)
Q Consensus 522 ~~~~~~~~~l~~L~~L~l~~C~~L~~l~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~i~~~~~~~L~~L~ 601 (937)
+.....+++|+.|++++|.-...+| ..+..+++|+.|+++++.-...++. ....+++|+.|.
T Consensus 325 ---~~~~~~l~~L~~L~L~~n~l~~~~p--~~l~~~~~L~~L~Ls~n~l~~~~p~-------------~~~~~~~L~~L~ 386 (968)
T PLN00113 325 ---PVALTSLPRLQVLQLWSNKFSGEIP--KNLGKHNNLTVLDLSTNNLTGEIPE-------------GLCSSGNLFKLI 386 (968)
T ss_pred ---ChhHhcCCCCCEEECcCCCCcCcCC--hHHhCCCCCcEEECCCCeeEeeCCh-------------hHhCcCCCCEEE
Confidence 1123467788888888765444444 3456778888888877653322221 011456777777
Q ss_pred ccCCCCccccccCCCCCcccCCCCCCccccCCCCCccccccccccCCCcceeeccCcccceeccCCcccccccCCCccEE
Q 002313 602 LQHLPQLTSSGFDLETPTNTQGSNPGIIAEGDPKDFTSLFNERVVFPSLKKLKLSSINVEKIWLNSFSAIESWGKNLTKL 681 (937)
Q Consensus 602 l~~c~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~l~~~~~~~~~~~~~~l~~L~~L 681 (937)
+.++.-...++.. ...+++|+.|++++|+++...... ...+++|+.|
T Consensus 387 l~~n~l~~~~p~~-----------------------------~~~~~~L~~L~L~~n~l~~~~p~~----~~~l~~L~~L 433 (968)
T PLN00113 387 LFSNSLEGEIPKS-----------------------------LGACRSLRRVRLQDNSFSGELPSE----FTKLPLVYFL 433 (968)
T ss_pred CcCCEecccCCHH-----------------------------HhCCCCCCEEECcCCEeeeECChh----HhcCCCCCEE
Confidence 7776433332221 234778888888888776443222 2367888888
Q ss_pred EEeccCCccccchHHHHhhccccceeeeccccchHHHhccCCCCCCCcccccccccceeeeccCcccccccccCCCCccc
Q 002313 682 TVEKCGRLKFLFSSSMVNGLEQLQQLDISHCKSMNEVINTRVGRDDNMIEMVFPKLVSLQLSHLPKLTRFGIGDSVEFPS 761 (937)
Q Consensus 682 ~i~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~~~~~L~~L~i~~c~~l~~~~~~~~~~l~~ 761 (937)
++++|.... ..+ ..+..+++|+.|++++|.....++.. ...++|+.|+++++.-....+ ..+.++++
T Consensus 434 ~Ls~N~l~~-~~~-~~~~~l~~L~~L~L~~n~~~~~~p~~----------~~~~~L~~L~ls~n~l~~~~~-~~~~~l~~ 500 (968)
T PLN00113 434 DISNNNLQG-RIN-SRKWDMPSLQMLSLARNKFFGGLPDS----------FGSKRLENLDLSRNQFSGAVP-RKLGSLSE 500 (968)
T ss_pred ECcCCcccC-ccC-hhhccCCCCcEEECcCceeeeecCcc----------cccccceEEECcCCccCCccC-hhhhhhhc
Confidence 888875433 222 24567888999999888754444332 134688888888875433333 34566888
Q ss_pred ccceeeccCCCceeeccccccccccccccCccCcCccccccccCCCccEEEecCCCCcceeccCCCCcccCCCCcEEEEE
Q 002313 762 LCQLQIACCPNLKIFICSCTEEMSSEKNIHTTQTQPLFDEKVGLPKLEVLRIDGMDNLRKIWHHQLALDSFTKLKDLDVE 841 (937)
Q Consensus 762 L~~L~i~~C~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~~l~~L~~L~i~ 841 (937)
|+.|++++|.-....+ .....+++|++|++++|. ++...+.. ++.+++|+.|+++
T Consensus 501 L~~L~Ls~N~l~~~~p----------------------~~~~~l~~L~~L~Ls~N~-l~~~~p~~--~~~l~~L~~L~Ls 555 (968)
T PLN00113 501 LMQLKLSENKLSGEIP----------------------DELSSCKKLVSLDLSHNQ-LSGQIPAS--FSEMPVLSQLDLS 555 (968)
T ss_pred cCEEECcCCcceeeCC----------------------hHHcCccCCCEEECCCCc-ccccCChh--HhCcccCCEEECC
Confidence 8889888875442111 111367899999999984 44332222 4567899999998
Q ss_pred cCCCcccccchhHHHhcCCCcEEeecccccceeeec
Q 002313 842 YCDQLLSIFPSNMLRRLERLEHLAVSECGSIEEIVE 877 (937)
Q Consensus 842 ~C~~L~~~~p~~~l~~l~~L~~L~i~~C~~l~~l~~ 877 (937)
+|..... +|. .+..+++|+.|++++|+-...+|.
T Consensus 556 ~N~l~~~-~p~-~l~~l~~L~~l~ls~N~l~~~~p~ 589 (968)
T PLN00113 556 QNQLSGE-IPK-NLGNVESLVQVNISHNHLHGSLPS 589 (968)
T ss_pred CCccccc-CCh-hHhcCcccCEEeccCCcceeeCCC
Confidence 8865544 676 467899999999999886666664
No 4
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=4.2e-32 Score=337.79 Aligned_cols=533 Identities=19% Similarity=0.124 Sum_probs=355.7
Q ss_pred CccceeeecCCcccccCChhhhcCCCCccEEEecCCcCc-ccCcccc-CCCCCCEEEccCCcccCcccccCCCCCcEEec
Q 002313 232 LKLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFH-SLPSSLG-CLINLRTLSLENCLVVDVAIIGDLKKLEILSL 309 (937)
Q Consensus 232 ~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~-~lp~~i~-~l~~Lr~L~L~~~~~~~l~~i~~L~~L~~L~L 309 (937)
.+++.|+++++...+.++.. |..+++|++|+|++|.+. .+|..+. .+.+||+|++++|.+......+.+.+|++|++
T Consensus 69 ~~v~~L~L~~~~i~~~~~~~-~~~l~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~~~l~~L~~L~L 147 (968)
T PLN00113 69 SRVVSIDLSGKNISGKISSA-IFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPRGSIPNLETLDL 147 (968)
T ss_pred CcEEEEEecCCCccccCChH-HhCCCCCCEEECCCCccCCcCChHHhccCCCCCEEECcCCccccccCccccCCCCEEEC
Confidence 57999999999877777655 689999999999999987 7887765 89999999999999876544577999999999
Q ss_pred ccCcCc-ccCcccccCccCCEEEecCCCCCcccChhhhcCCCCCcEEEcCCCcccceecCCCCCChhhhcCCCCCCeEEe
Q 002313 310 KHSSIE-QLPREIGQLTCLKLLDLSNCSKLKEIRPNVISNLTRLEELYMGNSFTQWKVEGQSNASLGELKQLSRLTTLEV 388 (937)
Q Consensus 310 ~~~~l~-~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l 388 (937)
++|.+. .+|..++++++|++|++++|.....+|.. ++++++|++|++++|.+. ...+..+.++++|+.|++
T Consensus 148 s~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~-~~~l~~L~~L~L~~n~l~-------~~~p~~l~~l~~L~~L~L 219 (968)
T PLN00113 148 SNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNS-LTNLTSLEFLTLASNQLV-------GQIPRELGQMKSLKWIYL 219 (968)
T ss_pred cCCcccccCChHHhcCCCCCEEECccCcccccCChh-hhhCcCCCeeeccCCCCc-------CcCChHHcCcCCccEEEC
Confidence 999886 78889999999999999997755677766 899999999999998654 345678889999999999
Q ss_pred ecCCCCC-CCccccccccceeEEEecCcCCCCCCcCCcceEEEecccccchhhhHHHHhhcccccccccccChhhhhhcc
Q 002313 389 HIPDAQV-MPQDLVFVELERFRICIGDVWSWSDGYETSKTLKLQLNNSTYLGYGMKMLLKRTEDLHLDELAGFKNVVHEL 467 (937)
Q Consensus 389 ~~~~~~~-~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l 467 (937)
+++.... .|..+ ..+++|+.|++.++......+..+
T Consensus 220 ~~n~l~~~~p~~l-------------------------------------------~~l~~L~~L~L~~n~l~~~~p~~l 256 (968)
T PLN00113 220 GYNNLSGEIPYEI-------------------------------------------GGLTSLNHLDLVYNNLTGPIPSSL 256 (968)
T ss_pred cCCccCCcCChhH-------------------------------------------hcCCCCCEEECcCceeccccChhH
Confidence 9886542 22221 123445555555543333334444
Q ss_pred cchhhcccCcEEEeecCCceEEEEccCCccccccccceecccccccccccccccccCCCCCccCCCccEEEEecCCCccc
Q 002313 468 DDEEGFARLRHLHVHNGPEILHILNSDGRVGTFPLLESLFLHNLINLEKVCDGKVRLNEDDKSFSNLRIIKVEGCHRVKH 547 (937)
Q Consensus 468 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~l~~~~~~~~~~~~~~~~l~~L~~L~l~~C~~L~~ 547 (937)
.. +++|++|+++++.....+ +.....+++|++|+++++. +... .| .....+++|+.|++.+|.-...
T Consensus 257 ~~---l~~L~~L~L~~n~l~~~~---p~~l~~l~~L~~L~Ls~n~-l~~~----~p--~~~~~l~~L~~L~l~~n~~~~~ 323 (968)
T PLN00113 257 GN---LKNLQYLFLYQNKLSGPI---PPSIFSLQKLISLDLSDNS-LSGE----IP--ELVIQLQNLEILHLFSNNFTGK 323 (968)
T ss_pred hC---CCCCCEEECcCCeeeccC---chhHhhccCcCEEECcCCe-eccC----CC--hhHcCCCCCcEEECCCCccCCc
Confidence 44 888999999887433222 2223567888888888764 2211 11 2234678889999888654444
Q ss_pred ccchhHHHhhccccEEEEcccccchhhhccccccccccCCccccccccccceeeccCCCCccccccCCCCCcccCCCCCC
Q 002313 548 LFPFSLVKNLLQLQKVKVTDCTNLKLIVGKESENSAHKNGSISGVYFRKLHFLKLQHLPQLTSSGFDLETPTNTQGSNPG 627 (937)
Q Consensus 548 l~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~i~~~~~~~L~~L~l~~c~~L~~~~~~~~~~~~~~~~~~~ 627 (937)
+| ..+..+++|+.|++.+|.....++. ....+++|+.|++.++..-..++..
T Consensus 324 ~~--~~~~~l~~L~~L~L~~n~l~~~~p~-------------~l~~~~~L~~L~Ls~n~l~~~~p~~------------- 375 (968)
T PLN00113 324 IP--VALTSLPRLQVLQLWSNKFSGEIPK-------------NLGKHNNLTVLDLSTNNLTGEIPEG------------- 375 (968)
T ss_pred CC--hhHhcCCCCCEEECcCCCCcCcCCh-------------HHhCCCCCcEEECCCCeeEeeCChh-------------
Confidence 44 3566788889998888764333221 1125678888888776433332221
Q ss_pred ccccCCCCCccccccccccCCCcceeeccCcccceeccCCcccccccCCCccEEEEeccCCccccchHHHHhhcccccee
Q 002313 628 IIAEGDPKDFTSLFNERVVFPSLKKLKLSSINVEKIWLNSFSAIESWGKNLTKLTVEKCGRLKFLFSSSMVNGLEQLQQL 707 (937)
Q Consensus 628 ~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~l~~~~~~~~~~~~~~l~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L 707 (937)
...+++|+.|++++|++....... ...+++|+.|++.+|.....+ + ..+..+++|+.|
T Consensus 376 ----------------~~~~~~L~~L~l~~n~l~~~~p~~----~~~~~~L~~L~L~~n~l~~~~-p-~~~~~l~~L~~L 433 (968)
T PLN00113 376 ----------------LCSSGNLFKLILFSNSLEGEIPKS----LGACRSLRRVRLQDNSFSGEL-P-SEFTKLPLVYFL 433 (968)
T ss_pred ----------------HhCcCCCCEEECcCCEecccCCHH----HhCCCCCCEEECcCCEeeeEC-C-hhHhcCCCCCEE
Confidence 123577888888888665432211 235778888888888543333 2 356788888888
Q ss_pred eeccccchHHHhccCCCCCCCcccccccccceeeeccCcccccccccCCCCcccccceeeccCCCceeeccccccccccc
Q 002313 708 DISHCKSMNEVINTRVGRDDNMIEMVFPKLVSLQLSHLPKLTRFGIGDSVEFPSLCQLQIACCPNLKIFICSCTEEMSSE 787 (937)
Q Consensus 708 ~i~~c~~l~~~~~~~~~~~~~~~~~~~~~L~~L~i~~c~~l~~~~~~~~~~l~~L~~L~i~~C~~l~~~~~~~~~~~~~~ 787 (937)
+++++.-...++.. ...+++|+.|++.+|.-...++.. ...++|+.|++++|.--...+
T Consensus 434 ~Ls~N~l~~~~~~~---------~~~l~~L~~L~L~~n~~~~~~p~~--~~~~~L~~L~ls~n~l~~~~~---------- 492 (968)
T PLN00113 434 DISNNNLQGRINSR---------KWDMPSLQMLSLARNKFFGGLPDS--FGSKRLENLDLSRNQFSGAVP---------- 492 (968)
T ss_pred ECcCCcccCccChh---------hccCCCCcEEECcCceeeeecCcc--cccccceEEECcCCccCCccC----------
Confidence 88876532222211 124678888888887655444432 234678888887765332110
Q ss_pred cccCccCcCccccccccCCCccEEEecCCCCcceeccCCCCcccCCCCcEEEEEcCCCcccccchhHHHhcCCCcEEeec
Q 002313 788 KNIHTTQTQPLFDEKVGLPKLEVLRIDGMDNLRKIWHHQLALDSFTKLKDLDVEYCDQLLSIFPSNMLRRLERLEHLAVS 867 (937)
Q Consensus 788 ~~~~~~~~~~l~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~~l~~L~~L~i~~C~~L~~~~p~~~l~~l~~L~~L~i~ 867 (937)
. ....+++|+.|++++|.-...+|.. +..+++|+.|+|++|.-. ...|. .+..+++|+.|+++
T Consensus 493 -----~-------~~~~l~~L~~L~Ls~N~l~~~~p~~---~~~l~~L~~L~Ls~N~l~-~~~p~-~~~~l~~L~~L~Ls 555 (968)
T PLN00113 493 -----R-------KLGSLSELMQLKLSENKLSGEIPDE---LSSCKKLVSLDLSHNQLS-GQIPA-SFSEMPVLSQLDLS 555 (968)
T ss_pred -----h-------hhhhhhccCEEECcCCcceeeCChH---HcCccCCCEEECCCCccc-ccCCh-hHhCcccCCEEECC
Confidence 1 1135678888888888433344332 345788888888777543 33555 46778888888888
Q ss_pred ccccceeeecccCcccccCCCceeecccCcccccccccccccCCCCCcccCCccCeEEEecCC
Q 002313 868 ECGSIEEIVEISSNCTVETAPGVVFRQLTSLKLHWLPRLKSFCPGIHISGWLVLKNLDVFECD 930 (937)
Q Consensus 868 ~C~~l~~l~~~~~~~~~~~~~~~~~~sL~~L~i~~c~~L~~l~~~~~~~~~~~L~~L~i~~C~ 930 (937)
+|.....+|. ....+++|+.|++++|+-...+|.... +.++....+.+.+
T Consensus 556 ~N~l~~~~p~----------~l~~l~~L~~l~ls~N~l~~~~p~~~~---~~~~~~~~~~~n~ 605 (968)
T PLN00113 556 QNQLSGEIPK----------NLGNVESLVQVNISHNHLHGSLPSTGA---FLAINASAVAGNI 605 (968)
T ss_pred CCcccccCCh----------hHhcCcccCEEeccCCcceeeCCCcch---hcccChhhhcCCc
Confidence 8765545553 122467788888888876666665432 2344444444433
No 5
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.88 E-value=1.3e-21 Score=242.97 Aligned_cols=419 Identities=18% Similarity=0.241 Sum_probs=293.8
Q ss_pred HHHHhhcccccCcchHHHHHHHHHHHHHHHhhccccccc---CCCCceeeehhhHHHHHHHHhhcc----EEEecccCcc
Q 002313 129 LRYVMGLRLLTNADTLEAARNRVHTLIDNLKSASLLFDG---DSEDHAKMHRIIHAIAVSIAAEKL----LFNIQNVADL 201 (937)
Q Consensus 129 i~~w~a~g~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~---~~~~~~~mhd~i~~la~~~~~~e~----~~~~~~~~~~ 201 (937)
++..++..+++... ....||++++++...-..++. +......-++-+.++.....+.+. ++.......+
T Consensus 472 l~~L~~ksLi~~~~----~~~~MHdLl~~~~r~i~~~~~~~~~~r~~l~~~~di~~vl~~~~g~~~v~~i~l~~~~~~~~ 547 (1153)
T PLN03210 472 LKNLVDKSLIHVRE----DIVEMHSLLQEMGKEIVRAQSNEPGEREFLVDAKDICDVLEDNTGTKKVLGITLDIDEIDEL 547 (1153)
T ss_pred hHHHHhcCCEEEcC----CeEEhhhHHHHHHHHHHHhhcCCCCcceeEeCHHHHHHHHHhCcccceeeEEEeccCcccee
Confidence 55566777775422 134688888887544333221 111222233334443332222222 1111111111
Q ss_pred hhhhh--hccCCCcEEEccCCCCc-------cCCccc-C-CCccceeeecCCcccccCChhhhcCCCCccEEEecCCcCc
Q 002313 202 KEELD--KIDEAPTAISIPFRGIY-------ELPERL-G-FLKLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFH 270 (937)
Q Consensus 202 ~~~~~--~~~~~l~~l~l~~~~~~-------~l~~~~-~-~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~ 270 (937)
.-... ..+.+++.+.+..+... .+|..+ . ..+||.|.+.++. ...+|..+ .+.+|+.|++.++.+.
T Consensus 548 ~i~~~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~-l~~lP~~f--~~~~L~~L~L~~s~l~ 624 (1153)
T PLN03210 548 HIHENAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYP-LRCMPSNF--RPENLVKLQMQGSKLE 624 (1153)
T ss_pred eecHHHHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCC-CCCCCCcC--CccCCcEEECcCcccc
Confidence 00011 45677888877554321 355555 2 3579999998764 46778764 5789999999999999
Q ss_pred ccCccccCCCCCCEEEccCCc-ccCcccccCCCCCcEEecccC-cCcccCcccccCccCCEEEecCCCCCcccChhhhcC
Q 002313 271 SLPSSLGCLINLRTLSLENCL-VVDVAIIGDLKKLEILSLKHS-SIEQLPREIGQLTCLKLLDLSNCSKLKEIRPNVISN 348 (937)
Q Consensus 271 ~lp~~i~~l~~Lr~L~L~~~~-~~~l~~i~~L~~L~~L~L~~~-~l~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~l~~ 348 (937)
.+|..+..+++|++|++++|. +..++.++.+++|++|++++| .+..+|..++++++|++|++++|+.++.+|.. + +
T Consensus 625 ~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~-i-~ 702 (1153)
T PLN03210 625 KLWDGVHSLTGLRNIDLRGSKNLKEIPDLSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTG-I-N 702 (1153)
T ss_pred ccccccccCCCCCEEECCCCCCcCcCCccccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCc-C-C
Confidence 999999999999999999875 566788999999999999998 57899999999999999999999999999986 3 8
Q ss_pred CCCCcEEEcCCCcccceecCCCCCChhhhcCCCCCCeEEeecCCCCCCCccccccccceeEEEecCcC-CCCCCcCCcce
Q 002313 349 LTRLEELYMGNSFTQWKVEGQSNASLGELKQLSRLTTLEVHIPDAQVMPQDLVFVELERFRICIGDVW-SWSDGYETSKT 427 (937)
Q Consensus 349 L~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~l~l~~~~~~-~~~~~~~~~~~ 427 (937)
+++|++|++++|... ...+. ...+|+.|+++.+.+..+|....+++|+.|.+...... -|.
T Consensus 703 l~sL~~L~Lsgc~~L-------~~~p~---~~~nL~~L~L~~n~i~~lP~~~~l~~L~~L~l~~~~~~~l~~-------- 764 (1153)
T PLN03210 703 LKSLYRLNLSGCSRL-------KSFPD---ISTNISWLDLDETAIEEFPSNLRLENLDELILCEMKSEKLWE-------- 764 (1153)
T ss_pred CCCCCEEeCCCCCCc-------ccccc---ccCCcCeeecCCCccccccccccccccccccccccchhhccc--------
Confidence 999999999998532 11111 23578999999999888888777778877766432110 000
Q ss_pred EEEecccccchhhhHHHHhhcccccccccccChhhhhhcccchhhcccCcEEEeecCCceEEEEccCCccccccccceec
Q 002313 428 LKLQLNNSTYLGYGMKMLLKRTEDLHLDELAGFKNVVHELDDEEGFARLRHLHVHNGPEILHILNSDGRVGTFPLLESLF 507 (937)
Q Consensus 428 l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~p~L~~L~ 507 (937)
...+.........++|+.|++.++.....++..+.. +++|+.|++.+|..++.++.. ..+++|++|+
T Consensus 765 ------~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~---L~~L~~L~Ls~C~~L~~LP~~----~~L~sL~~L~ 831 (1153)
T PLN03210 765 ------RVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQN---LHKLEHLEIENCINLETLPTG----INLESLESLD 831 (1153)
T ss_pred ------cccccchhhhhccccchheeCCCCCCccccChhhhC---CCCCCEEECCCCCCcCeeCCC----CCccccCEEE
Confidence 000001111223578999999988777666666655 999999999999988887543 3689999999
Q ss_pred ccccccccccccccccCCCCCccCCCccEEEEecCCCcccccchhHHHhhccccEEEEcccccchhhhccccccccccCC
Q 002313 508 LHNLINLEKVCDGKVRLNEDDKSFSNLRIIKVEGCHRVKHLFPFSLVKNLLQLQKVKVTDCTNLKLIVGKESENSAHKNG 587 (937)
Q Consensus 508 l~~~~~l~~~~~~~~~~~~~~~~l~~L~~L~l~~C~~L~~l~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~ 587 (937)
+++|..++.+. ...++|+.|++.+ +.++.+|. .+..+++|+.|++.+|++++.++..
T Consensus 832 Ls~c~~L~~~p----------~~~~nL~~L~Ls~-n~i~~iP~--si~~l~~L~~L~L~~C~~L~~l~~~---------- 888 (1153)
T PLN03210 832 LSGCSRLRTFP----------DISTNISDLNLSR-TGIEEVPW--WIEKFSNLSFLDMNGCNNLQRVSLN---------- 888 (1153)
T ss_pred CCCCCcccccc----------ccccccCEeECCC-CCCccChH--HHhcCCCCCEEECCCCCCcCccCcc----------
Confidence 99998887642 2347899999988 67888874 5788999999999999999987631
Q ss_pred ccccccccccceeeccCCCCcccccc
Q 002313 588 SISGVYFRKLHFLKLQHLPQLTSSGF 613 (937)
Q Consensus 588 ~i~~~~~~~L~~L~l~~c~~L~~~~~ 613 (937)
...+++|+.+.+.+|++|..++.
T Consensus 889 ---~~~L~~L~~L~l~~C~~L~~~~l 911 (1153)
T PLN03210 889 ---ISKLKHLETVDFSDCGALTEASW 911 (1153)
T ss_pred ---cccccCCCeeecCCCcccccccC
Confidence 12678999999999999987543
No 6
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.85 E-value=5.3e-22 Score=206.98 Aligned_cols=388 Identities=18% Similarity=0.227 Sum_probs=230.5
Q ss_pred ccCCCcEEEccCCCCccCCccc----CCCccceeeecCCcccccCChhhhcCCCCccEEEecCCcCcccCccccCCCCCC
Q 002313 208 IDEAPTAISIPFRGIYELPERL----GFLKLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHSLPSSLGCLINLR 283 (937)
Q Consensus 208 ~~~~l~~l~l~~~~~~~l~~~~----~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~lp~~i~~l~~Lr 283 (937)
..-..+-++.+.+.++.+...- -.+.-++|++++|... .+....|.++.+|+.+++.+|.++.+|.-.+-..||+
T Consensus 50 c~c~~~lldcs~~~lea~~~~~l~g~lp~~t~~LdlsnNkl~-~id~~~f~nl~nLq~v~l~~N~Lt~IP~f~~~sghl~ 128 (873)
T KOG4194|consen 50 CPCNTRLLDCSDRELEAIDKSRLKGFLPSQTQTLDLSNNKLS-HIDFEFFYNLPNLQEVNLNKNELTRIPRFGHESGHLE 128 (873)
T ss_pred CCCCceeeecCccccccccccccCCcCccceeeeeccccccc-cCcHHHHhcCCcceeeeeccchhhhccccccccccee
Confidence 3445566777777666543221 2345677888877654 4445567889999999999999999998777778899
Q ss_pred EEEccCCcccCc--ccccCCCCCcEEecccCcCcccC-cccccCccCCEEEecCCCCCcccChhhhcCCCCCcEEEcCCC
Q 002313 284 TLSLENCLVVDV--AIIGDLKKLEILSLKHSSIEQLP-REIGQLTCLKLLDLSNCSKLKEIRPNVISNLTRLEELYMGNS 360 (937)
Q Consensus 284 ~L~L~~~~~~~l--~~i~~L~~L~~L~L~~~~l~~lp-~~i~~L~~L~~L~l~~~~~l~~lp~~~l~~L~~L~~L~l~~~ 360 (937)
.|+|.+|.+..+ +.+..+..||.|||+.|.|+++| +.+..-.++++|++++ +.++.+..+.+..+.+|-+|.++.|
T Consensus 129 ~L~L~~N~I~sv~se~L~~l~alrslDLSrN~is~i~~~sfp~~~ni~~L~La~-N~It~l~~~~F~~lnsL~tlkLsrN 207 (873)
T KOG4194|consen 129 KLDLRHNLISSVTSEELSALPALRSLDLSRNLISEIPKPSFPAKVNIKKLNLAS-NRITTLETGHFDSLNSLLTLKLSRN 207 (873)
T ss_pred EEeeeccccccccHHHHHhHhhhhhhhhhhchhhcccCCCCCCCCCceEEeecc-ccccccccccccccchheeeecccC
Confidence 999999988877 77888999999999999888887 4567778899999988 4588888777888888989998888
Q ss_pred cccceecCCCCCChhhhcCCCCCCeEEeecCCCCCCCccc--cccccceeEEEecCcCCCCCCcCCcceEEEecccccch
Q 002313 361 FTQWKVEGQSNASLGELKQLSRLTTLEVHIPDAQVMPQDL--VFVELERFRICIGDVWSWSDGYETSKTLKLQLNNSTYL 438 (937)
Q Consensus 361 ~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~--~~~~L~~l~l~~~~~~~~~~~~~~~~~l~l~~~~~~~~ 438 (937)
.+. ......+++|++|+.|++..|.+..+.... .++.|+.++ ++.|.....
T Consensus 208 rit-------tLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlk--------------------lqrN~I~kL 260 (873)
T KOG4194|consen 208 RIT-------TLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLK--------------------LQRNDISKL 260 (873)
T ss_pred ccc-------ccCHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhh--------------------hhhcCcccc
Confidence 765 345567788888888888777654321110 122222222 222222222
Q ss_pred hhhHHHHhhcccccccccccChhhhhhcccchhhcccCcEEEeecCCceEEEEccCCccccccccceecccccccccccc
Q 002313 439 GYGMKMLLKRTEDLHLDELAGFKNVVHELDDEEGFARLRHLHVHNGPEILHILNSDGRVGTFPLLESLFLHNLINLEKVC 518 (937)
Q Consensus 439 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~l~~~~ 518 (937)
..|.+.. +.++++|+|+.+ .+..+ ..+|...+.+|+.|+++++ .++.+.
T Consensus 261 ~DG~Fy~---------------------------l~kme~l~L~~N-~l~~v--n~g~lfgLt~L~~L~lS~N-aI~rih 309 (873)
T KOG4194|consen 261 DDGAFYG---------------------------LEKMEHLNLETN-RLQAV--NEGWLFGLTSLEQLDLSYN-AIQRIH 309 (873)
T ss_pred cCcceee---------------------------ecccceeecccc-hhhhh--hcccccccchhhhhccchh-hhheee
Confidence 2222222 445555555433 22211 1233345555555555552 333332
Q ss_pred cccccCCCCCccCCCccEEEEecCCCcccccchhHHHhhccccEEEEcccccchhhhccccccccccCCccccccccccc
Q 002313 519 DGKVRLNEDDKSFSNLRIIKVEGCHRVKHLFPFSLVKNLLQLQKVKVTDCTNLKLIVGKESENSAHKNGSISGVYFRKLH 598 (937)
Q Consensus 519 ~~~~~~~~~~~~l~~L~~L~l~~C~~L~~l~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~i~~~~~~~L~ 598 (937)
... ....++|+.|++++ ++++.+++ +.+..+..|++|.+++ +.+..+.... ...+.+|+
T Consensus 310 ~d~------WsftqkL~~LdLs~-N~i~~l~~-~sf~~L~~Le~LnLs~-Nsi~~l~e~a------------f~~lssL~ 368 (873)
T KOG4194|consen 310 IDS------WSFTQKLKELDLSS-NRITRLDE-GSFRVLSQLEELNLSH-NSIDHLAEGA------------FVGLSSLH 368 (873)
T ss_pred cch------hhhcccceeEeccc-cccccCCh-hHHHHHHHhhhhcccc-cchHHHHhhH------------HHHhhhhh
Confidence 222 12456677777766 66666655 4456666777777766 3344332110 11455666
Q ss_pred eeeccCCCCccccccCCCCCcccCCCCCCccccCCCCCccccccccccCCCcceeeccCcccceeccCCcccccccCCCc
Q 002313 599 FLKLQHLPQLTSSGFDLETPTNTQGSNPGIIAEGDPKDFTSLFNERVVFPSLKKLKLSSINVEKIWLNSFSAIESWGKNL 678 (937)
Q Consensus 599 ~L~l~~c~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~l~~~~~~~~~~~~~~l~~L 678 (937)
+|++++.. +. |. .|... .....+++|+.|.+.|++++.++...+ ..+++|
T Consensus 369 ~LdLr~N~-ls-~~--IEDaa----------------------~~f~gl~~LrkL~l~gNqlk~I~krAf----sgl~~L 418 (873)
T KOG4194|consen 369 KLDLRSNE-LS-WC--IEDAA----------------------VAFNGLPSLRKLRLTGNQLKSIPKRAF----SGLEAL 418 (873)
T ss_pred hhcCcCCe-EE-EE--Eecch----------------------hhhccchhhhheeecCceeeecchhhh----ccCccc
Confidence 66665532 11 10 00000 001136677777777777666664443 355667
Q ss_pred cEEEEeccCCccccchHHHHhhccccceeee
Q 002313 679 TKLTVEKCGRLKFLFSSSMVNGLEQLQQLDI 709 (937)
Q Consensus 679 ~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~i 709 (937)
++|++.++..-+ +-+ ..+.++ .|++|.+
T Consensus 419 E~LdL~~NaiaS-Iq~-nAFe~m-~Lk~Lv~ 446 (873)
T KOG4194|consen 419 EHLDLGDNAIAS-IQP-NAFEPM-ELKELVM 446 (873)
T ss_pred ceecCCCCccee-ecc-cccccc-hhhhhhh
Confidence 777776664322 211 123334 5666554
No 7
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.83 E-value=8.9e-23 Score=224.60 Aligned_cols=411 Identities=23% Similarity=0.244 Sum_probs=243.6
Q ss_pred EEccCCCCccCCccc-CCCccceeeecCCcccccCChhhhcCCCCccEEEecCCcCcccCccccCCCCCCEEEccCCccc
Q 002313 215 ISIPFRGIYELPERL-GFLKLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHSLPSSLGCLINLRTLSLENCLVV 293 (937)
Q Consensus 215 l~l~~~~~~~l~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~lp~~i~~l~~Lr~L~L~~~~~~ 293 (937)
++++...++-+|..+ .-..+..|++..|... ..|-.+..+.-+|+.||+++|.+..+|..+..+.+|+.|+++.|.+.
T Consensus 3 vd~s~~~l~~ip~~i~~~~~~~~ln~~~N~~l-~~pl~~~~~~v~L~~l~lsnn~~~~fp~~it~l~~L~~ln~s~n~i~ 81 (1081)
T KOG0618|consen 3 VDASDEQLELIPEQILNNEALQILNLRRNSLL-SRPLEFVEKRVKLKSLDLSNNQISSFPIQITLLSHLRQLNLSRNYIR 81 (1081)
T ss_pred cccccccCcccchhhccHHHHHhhhccccccc-cCchHHhhheeeeEEeeccccccccCCchhhhHHHHhhcccchhhHh
Confidence 455666667777666 3334777777776543 33445556666799999999999999999999999999999999998
Q ss_pred Cc-ccccCCCCCcEEecccCcCcccCcccccCccCCEEEecCCCCCcccChhhhcCCCCCcEEEcCCCcccceecCCCCC
Q 002313 294 DV-AIIGDLKKLEILSLKHSSIEQLPREIGQLTCLKLLDLSNCSKLKEIRPNVISNLTRLEELYMGNSFTQWKVEGQSNA 372 (937)
Q Consensus 294 ~l-~~i~~L~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~ 372 (937)
.. .+++++.+|++|+|.+|.+..+|.++..+++|++|++++ +.+..+|.- +..++.+..+..++|..
T Consensus 82 ~vp~s~~~~~~l~~lnL~~n~l~~lP~~~~~lknl~~LdlS~-N~f~~~Pl~-i~~lt~~~~~~~s~N~~---------- 149 (1081)
T KOG0618|consen 82 SVPSSCSNMRNLQYLNLKNNRLQSLPASISELKNLQYLDLSF-NHFGPIPLV-IEVLTAEEELAASNNEK---------- 149 (1081)
T ss_pred hCchhhhhhhcchhheeccchhhcCchhHHhhhcccccccch-hccCCCchh-HHhhhHHHHHhhhcchh----------
Confidence 77 789999999999999999999999999999999999999 558888875 88888888888887721
Q ss_pred ChhhhcCCCCCCeEEeecCCCCC-CCccccccccceeEEEecCcCCCCCCcCCcceEEEecccccchhhhHHHHhhcccc
Q 002313 373 SLGELKQLSRLTTLEVHIPDAQV-MPQDLVFVELERFRICIGDVWSWSDGYETSKTLKLQLNNSTYLGYGMKMLLKRTED 451 (937)
Q Consensus 373 ~~~~l~~l~~L~~L~l~~~~~~~-~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~L~~ 451 (937)
+..++... ++++++..+.... ++.++ .+++. .
T Consensus 150 -~~~lg~~~-ik~~~l~~n~l~~~~~~~i--~~l~~-------------------------------------------~ 182 (1081)
T KOG0618|consen 150 -IQRLGQTS-IKKLDLRLNVLGGSFLIDI--YNLTH-------------------------------------------Q 182 (1081)
T ss_pred -hhhhcccc-chhhhhhhhhcccchhcch--hhhhe-------------------------------------------e
Confidence 12222222 4455554443211 11111 01111 1
Q ss_pred cccccccChhhhhhcccchhhcccCcEEEeecCCceEEEEccCCccccccccceecccccccccccccccccCCCCCccC
Q 002313 452 LHLDELAGFKNVVHELDDEEGFARLRHLHVHNGPEILHILNSDGRVGTFPLLESLFLHNLINLEKVCDGKVRLNEDDKSF 531 (937)
Q Consensus 452 L~l~~~~~~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~l~~~~~~~~~~~~~~~~l 531 (937)
|++.+.... .-.+ ..+++|+.++....... .+ ...-|+|+.|+...++-. .......|
T Consensus 183 ldLr~N~~~---~~dl---s~~~~l~~l~c~rn~ls-~l------~~~g~~l~~L~a~~n~l~-~~~~~p~p-------- 240 (1081)
T KOG0618|consen 183 LDLRYNEME---VLDL---SNLANLEVLHCERNQLS-EL------EISGPSLTALYADHNPLT-TLDVHPVP-------- 240 (1081)
T ss_pred eecccchhh---hhhh---hhccchhhhhhhhcccc-eE------EecCcchheeeeccCcce-eecccccc--------
Confidence 333322211 0111 22555666655443222 11 123467777777776543 22222223
Q ss_pred CCccEEEEecCCCcccccchhHHHhhccccEEEEcccccchhhhccccccccccCCccccccccccceeeccCCCCcccc
Q 002313 532 SNLRIIKVEGCHRVKHLFPFSLVKNLLQLQKVKVTDCTNLKLIVGKESENSAHKNGSISGVYFRKLHFLKLQHLPQLTSS 611 (937)
Q Consensus 532 ~~L~~L~l~~C~~L~~l~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~i~~~~~~~L~~L~l~~c~~L~~~ 611 (937)
.+|++++++. ++++.+| .++..+++|+.+.+.+. .+..++.. + ....+|+.|.+..| .++.+
T Consensus 241 ~nl~~~dis~-n~l~~lp--~wi~~~~nle~l~~n~N-~l~~lp~r-----------i--~~~~~L~~l~~~~n-el~yi 302 (1081)
T KOG0618|consen 241 LNLQYLDISH-NNLSNLP--EWIGACANLEALNANHN-RLVALPLR-----------I--SRITSLVSLSAAYN-ELEYI 302 (1081)
T ss_pred ccceeeecch-hhhhcch--HHHHhcccceEecccch-hHHhhHHH-----------H--hhhhhHHHHHhhhh-hhhhC
Confidence 6788888888 7788887 78888889998888773 34444321 1 13445555555443 22332
Q ss_pred ccCCCCCcccCCCCCCccccCCCCCccccccccccCCCcceeeccCcccceeccCCcccccccCCCccEEEEeccCCccc
Q 002313 612 GFDLETPTNTQGSNPGIIAEGDPKDFTSLFNERVVFPSLKKLKLSSINVEKIWLNSFSAIESWGKNLTKLTVEKCGRLKF 691 (937)
Q Consensus 612 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~l~~~~~~~~~~~~~~l~~L~~L~i~~c~~l~~ 691 (937)
+.. ...+.+|++|++..++|.++|...+.. ...+|+.|+.+.. .+..
T Consensus 303 p~~-----------------------------le~~~sL~tLdL~~N~L~~lp~~~l~v---~~~~l~~ln~s~n-~l~~ 349 (1081)
T KOG0618|consen 303 PPF-----------------------------LEGLKSLRTLDLQSNNLPSLPDNFLAV---LNASLNTLNVSSN-KLST 349 (1081)
T ss_pred CCc-----------------------------ccccceeeeeeehhccccccchHHHhh---hhHHHHHHhhhhc-cccc
Confidence 222 223667777777777777766422200 1112344443332 2222
Q ss_pred cchHHHHhhccccceeeeccccchHHHhccCCCCCCCcccccccccceeeeccCcccccccccCCCCcccccceeecc
Q 002313 692 LFSSSMVNGLEQLQQLDISHCKSMNEVINTRVGRDDNMIEMVFPKLVSLQLSHLPKLTRFGIGDSVEFPSLCQLQIAC 769 (937)
Q Consensus 692 l~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~~~~~L~~L~i~~c~~l~~~~~~~~~~l~~L~~L~i~~ 769 (937)
.+. ..-..++.|+.|.+.+..--..... ....++.|+.|++++ ..|.+||...+.++..|++|.+++
T Consensus 350 lp~-~~e~~~~~Lq~LylanN~Ltd~c~p---------~l~~~~hLKVLhLsy-NrL~~fpas~~~kle~LeeL~LSG 416 (1081)
T KOG0618|consen 350 LPS-YEENNHAALQELYLANNHLTDSCFP---------VLVNFKHLKVLHLSY-NRLNSFPASKLRKLEELEELNLSG 416 (1081)
T ss_pred ccc-ccchhhHHHHHHHHhcCcccccchh---------hhccccceeeeeecc-cccccCCHHHHhchHHhHHHhccc
Confidence 211 1123445556666544321111111 112455666666643 355666666666666666666655
No 8
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.83 E-value=1.4e-23 Score=209.18 Aligned_cols=175 Identities=26% Similarity=0.386 Sum_probs=146.0
Q ss_pred CCcEEEccCCCCccCCccc-CCCccceeeecCCcccccCChhhhcCCCCccEEEecCCcCcccCccccCCCCCCEEEccC
Q 002313 211 APTAISIPFRGIYELPERL-GFLKLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHSLPSSLGCLINLRTLSLEN 289 (937)
Q Consensus 211 ~l~~l~l~~~~~~~l~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~lp~~i~~l~~Lr~L~L~~ 289 (937)
.+..+.++.|++..+..+. .+..+.+|++..|... ++|.++ +++..+..|+.++|.+..+|..++.+..|+.|+.++
T Consensus 46 ~l~~lils~N~l~~l~~dl~nL~~l~vl~~~~n~l~-~lp~ai-g~l~~l~~l~vs~n~ls~lp~~i~s~~~l~~l~~s~ 123 (565)
T KOG0472|consen 46 DLQKLILSHNDLEVLREDLKNLACLTVLNVHDNKLS-QLPAAI-GELEALKSLNVSHNKLSELPEQIGSLISLVKLDCSS 123 (565)
T ss_pred chhhhhhccCchhhccHhhhcccceeEEEeccchhh-hCCHHH-HHHHHHHHhhcccchHhhccHHHhhhhhhhhhhccc
Confidence 4666778888888877766 6888899999888754 677775 888999999999999999999999999999999999
Q ss_pred CcccCc-ccccCCCCCcEEecccCcCcccCcccccCccCCEEEecCCCCCcccChhhhcCCCCCcEEEcCCCcccceecC
Q 002313 290 CLVVDV-AIIGDLKKLEILSLKHSSIEQLPREIGQLTCLKLLDLSNCSKLKEIRPNVISNLTRLEELYMGNSFTQWKVEG 368 (937)
Q Consensus 290 ~~~~~l-~~i~~L~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~l~~L~~L~~L~l~~~~~~~~~~~ 368 (937)
|.+..+ ++++.+..|..|+..+|++.++|++++++.+|..|++.+ ++++.+|++.+. ++.|++|+...|...
T Consensus 124 n~~~el~~~i~~~~~l~dl~~~~N~i~slp~~~~~~~~l~~l~~~~-n~l~~l~~~~i~-m~~L~~ld~~~N~L~----- 196 (565)
T KOG0472|consen 124 NELKELPDSIGRLLDLEDLDATNNQISSLPEDMVNLSKLSKLDLEG-NKLKALPENHIA-MKRLKHLDCNSNLLE----- 196 (565)
T ss_pred cceeecCchHHHHhhhhhhhccccccccCchHHHHHHHHHHhhccc-cchhhCCHHHHH-HHHHHhcccchhhhh-----
Confidence 998877 899999999999999999999999999999999999998 568889888555 999999987666543
Q ss_pred CCCCChhhhcCCCCCCeEEeecCCCCCCC
Q 002313 369 QSNASLGELKQLSRLTTLEVHIPDAQVMP 397 (937)
Q Consensus 369 ~~~~~~~~l~~l~~L~~L~l~~~~~~~~~ 397 (937)
..+.+++.+.+|..|++..+.+..+|
T Consensus 197 ---tlP~~lg~l~~L~~LyL~~Nki~~lP 222 (565)
T KOG0472|consen 197 ---TLPPELGGLESLELLYLRRNKIRFLP 222 (565)
T ss_pred ---cCChhhcchhhhHHHHhhhcccccCC
Confidence 56777888888888888777665554
No 9
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.82 E-value=2.1e-22 Score=211.08 Aligned_cols=331 Identities=21% Similarity=0.298 Sum_probs=252.4
Q ss_pred ccCcchhhhh--hccCCCcEEEccCCCCccCCccc-CCCccceeeecCCcc-cccCChhhhcCCCCccEEEecCCcCccc
Q 002313 197 NVADLKEELD--KIDEAPTAISIPFRGIYELPERL-GFLKLKLFLFFTENL-SLQIPDPFFEGMTELRVLDLTGFRFHSL 272 (937)
Q Consensus 197 ~~~~~~~~~~--~~~~~l~~l~l~~~~~~~l~~~~-~~~~L~~L~l~~~~~-~~~~~~~~~~~l~~Lr~L~L~~~~~~~l 272 (937)
+.+.+..+|. ..++++.||++.+|.+.++.-.. .++.||++.+..|+. ...+|+++| +++.|.+|||++|++.+.
T Consensus 40 nrt~L~~vPeEL~~lqkLEHLs~~HN~L~~vhGELs~Lp~LRsv~~R~N~LKnsGiP~diF-~l~dLt~lDLShNqL~Ev 118 (1255)
T KOG0444|consen 40 NRTKLEQVPEELSRLQKLEHLSMAHNQLISVHGELSDLPRLRSVIVRDNNLKNSGIPTDIF-RLKDLTILDLSHNQLREV 118 (1255)
T ss_pred chhhhhhChHHHHHHhhhhhhhhhhhhhHhhhhhhccchhhHHHhhhccccccCCCCchhc-ccccceeeecchhhhhhc
Confidence 3456666777 56889999999999998876665 799999999988874 346899986 699999999999999999
Q ss_pred CccccCCCCCCEEEccCCcccCc--ccccCCCCCcEEecccCcCcccCcccccCccCCEEEecCCCCCcccChhhhcCCC
Q 002313 273 PSSLGCLINLRTLSLENCLVVDV--AIIGDLKKLEILSLKHSSIEQLPREIGQLTCLKLLDLSNCSKLKEIRPNVISNLT 350 (937)
Q Consensus 273 p~~i~~l~~Lr~L~L~~~~~~~l--~~i~~L~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~l~~L~ 350 (937)
|..+.+.+++-+|+|++|++..+ +-+-+|+.|-+|||++|++..+|+.+..|.+|++|+++++. +..+.-..+-.|+
T Consensus 119 P~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~NrLe~LPPQ~RRL~~LqtL~Ls~NP-L~hfQLrQLPsmt 197 (1255)
T KOG0444|consen 119 PTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNNRLEMLPPQIRRLSMLQTLKLSNNP-LNHFQLRQLPSMT 197 (1255)
T ss_pred chhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhccccchhhhcCHHHHHHhhhhhhhcCCCh-hhHHHHhcCccch
Confidence 99999999999999999999877 67889999999999999999999999999999999999965 5555443355678
Q ss_pred CCcEEEcCCCcccceecCCCCCChhhhcCCCCCCeEEeecCCCCCCCccc-cccccceeEEEecCcCCCCCCcCCcceEE
Q 002313 351 RLEELYMGNSFTQWKVEGQSNASLGELKQLSRLTTLEVHIPDAQVMPQDL-VFVELERFRICIGDVWSWSDGYETSKTLK 429 (937)
Q Consensus 351 ~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~-~~~~L~~l~l~~~~~~~~~~~~~~~~~l~ 429 (937)
+|++|.+++...+ ....+.++..+.+|+.++++.|.+..+|.-+ ...+|++|+++++.. +.+.
T Consensus 198 sL~vLhms~TqRT------l~N~Ptsld~l~NL~dvDlS~N~Lp~vPecly~l~~LrrLNLS~N~i----------teL~ 261 (1255)
T KOG0444|consen 198 SLSVLHMSNTQRT------LDNIPTSLDDLHNLRDVDLSENNLPIVPECLYKLRNLRRLNLSGNKI----------TELN 261 (1255)
T ss_pred hhhhhhcccccch------hhcCCCchhhhhhhhhccccccCCCcchHHHhhhhhhheeccCcCce----------eeee
Confidence 8889998887543 2345667888889999999999998888876 788888888765432 1111
Q ss_pred EecccccchhhhHHHHhhcccccccccccChhhhhhcccchhhcccCcEEEeecCCceEEEEccCCccccccccceeccc
Q 002313 430 LQLNNSTYLGYGMKMLLKRTEDLHLDELAGFKNVVHELDDEEGFARLRHLHVHNGPEILHILNSDGRVGTFPLLESLFLH 509 (937)
Q Consensus 430 l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~p~L~~L~l~ 509 (937)
... ..-.+++.|+++... .+..+..+.. ++.|+.|...++. +..- +.+...+.+..|+.+...
T Consensus 262 ----~~~-------~~W~~lEtLNlSrNQ-Lt~LP~avcK---L~kL~kLy~n~Nk-L~Fe-GiPSGIGKL~~Levf~aa 324 (1255)
T KOG0444|consen 262 ----MTE-------GEWENLETLNLSRNQ-LTVLPDAVCK---LTKLTKLYANNNK-LTFE-GIPSGIGKLIQLEVFHAA 324 (1255)
T ss_pred ----ccH-------HHHhhhhhhccccch-hccchHHHhh---hHHHHHHHhccCc-cccc-CCccchhhhhhhHHHHhh
Confidence 111 123457777776633 2334444444 7788888776542 2111 122233667778888877
Q ss_pred ccccccccccccccCCCCCccCCCccEEEEecCCCcccccchhHHHhhccccEEEEcccccchh
Q 002313 510 NLINLEKVCDGKVRLNEDDKSFSNLRIIKVEGCHRVKHLFPFSLVKNLLQLQKVKVTDCTNLKL 573 (937)
Q Consensus 510 ~~~~l~~~~~~~~~~~~~~~~l~~L~~L~l~~C~~L~~l~~~~~~~~l~~L~~L~i~~c~~l~~ 573 (937)
+ ++|+.+ |++...++.|++|.+. |++|..+| ..++-++.|+.|++.+.+++.-
T Consensus 325 n-N~LElV-------PEglcRC~kL~kL~L~-~NrLiTLP--eaIHlL~~l~vLDlreNpnLVM 377 (1255)
T KOG0444|consen 325 N-NKLELV-------PEGLCRCVKLQKLKLD-HNRLITLP--EAIHLLPDLKVLDLRENPNLVM 377 (1255)
T ss_pred c-cccccC-------chhhhhhHHHHHhccc-ccceeech--hhhhhcCCcceeeccCCcCccC
Confidence 7 455543 2446678999999986 48888888 4788899999999999988764
No 10
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.82 E-value=1.1e-20 Score=197.27 Aligned_cols=336 Identities=18% Similarity=0.251 Sum_probs=205.4
Q ss_pred cCCCcEEEccCCCCccCCcccC-CCccceeeecCCcccccCChhhhcCCCCccEEEecCCcCcccCc-cccCCCCCCEEE
Q 002313 209 DEAPTAISIPFRGIYELPERLG-FLKLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHSLPS-SLGCLINLRTLS 286 (937)
Q Consensus 209 ~~~l~~l~l~~~~~~~l~~~~~-~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~lp~-~i~~l~~Lr~L~ 286 (937)
+.+++.+++..|.++.+|.... ..+++.|++.+|.+. .+..+.++.+..||+|||+.|.|.++|. +|..-.++++|+
T Consensus 101 l~nLq~v~l~~N~Lt~IP~f~~~sghl~~L~L~~N~I~-sv~se~L~~l~alrslDLSrN~is~i~~~sfp~~~ni~~L~ 179 (873)
T KOG4194|consen 101 LPNLQEVNLNKNELTRIPRFGHESGHLEKLDLRHNLIS-SVTSEELSALPALRSLDLSRNLISEIPKPSFPAKVNIKKLN 179 (873)
T ss_pred CCcceeeeeccchhhhcccccccccceeEEeeeccccc-cccHHHHHhHhhhhhhhhhhchhhcccCCCCCCCCCceEEe
Confidence 4556666666666666666653 445777776665433 3333335666677777777777766643 355556677777
Q ss_pred ccCCcccCc--ccccCCCCCcEEecccCcCcccCc-ccccCccCCEEEecCCCCCcccChhhhcCCCCCcEEEcCCCccc
Q 002313 287 LENCLVVDV--AIIGDLKKLEILSLKHSSIEQLPR-EIGQLTCLKLLDLSNCSKLKEIRPNVISNLTRLEELYMGNSFTQ 363 (937)
Q Consensus 287 L~~~~~~~l--~~i~~L~~L~~L~L~~~~l~~lp~-~i~~L~~L~~L~l~~~~~l~~lp~~~l~~L~~L~~L~l~~~~~~ 363 (937)
|++|+++.+ ..|..+.+|-+|.|++|.++.+|. .|.+|++|+.|++.. +.++.+..-.+..|.+|+.|.+..|.+.
T Consensus 180 La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnr-N~irive~ltFqgL~Sl~nlklqrN~I~ 258 (873)
T KOG4194|consen 180 LASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNR-NRIRIVEGLTFQGLPSLQNLKLQRNDIS 258 (873)
T ss_pred eccccccccccccccccchheeeecccCcccccCHHHhhhcchhhhhhccc-cceeeehhhhhcCchhhhhhhhhhcCcc
Confidence 777777766 567777777777777777777763 455577777777766 3355554444666777777776666443
Q ss_pred ceecCCCCCChhhhcCCCCCCeEEeecCCCCCCCccc--cccccceeEEEecCcC-----CCCCCcCCcceEEEeccccc
Q 002313 364 WKVEGQSNASLGELKQLSRLTTLEVHIPDAQVMPQDL--VFVELERFRICIGDVW-----SWSDGYETSKTLKLQLNNST 436 (937)
Q Consensus 364 ~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~--~~~~L~~l~l~~~~~~-----~~~~~~~~~~~l~l~~~~~~ 436 (937)
...-+.+-.+.++++|+++.|.+..+.... .++.|+.|.++.+..- .|. -...++.+++..|...
T Consensus 259 -------kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~Ws-ftqkL~~LdLs~N~i~ 330 (873)
T KOG4194|consen 259 -------KLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWS-FTQKLKELDLSSNRIT 330 (873)
T ss_pred -------cccCcceeeecccceeecccchhhhhhcccccccchhhhhccchhhhheeecchhh-hcccceeEeccccccc
Confidence 222344555666677777777665554442 5566666666544422 222 2235667777777777
Q ss_pred chhhhHHHHhhcccccccccccChhhhhhcccchhhcccCcEEEeecCCceEEEEccCCccccccccceecccccccccc
Q 002313 437 YLGYGMKMLLKRTEDLHLDELAGFKNVVHELDDEEGFARLRHLHVHNGPEILHILNSDGRVGTFPLLESLFLHNLINLEK 516 (937)
Q Consensus 437 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~l~~ 516 (937)
....+-+..+..|+.|.|+......-.-..+ .++.+|++|+|+++.--..+.+.......+|+|++|.+.+ ++++.
T Consensus 331 ~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af---~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~g-Nqlk~ 406 (873)
T KOG4194|consen 331 RLDEGSFRVLSQLEELNLSHNSIDHLAEGAF---VGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTG-NQLKS 406 (873)
T ss_pred cCChhHHHHHHHhhhhcccccchHHHHhhHH---HHhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecC-ceeee
Confidence 7777777777888888877643321111222 3477888888877654444433333335577888888877 46777
Q ss_pred cccccccCCCCCccCCCccEEEEecCCCcccccchhHHHhhccccEEEEcc
Q 002313 517 VCDGKVRLNEDDKSFSNLRIIKVEGCHRVKHLFPFSLVKNLLQLQKVKVTD 567 (937)
Q Consensus 517 ~~~~~~~~~~~~~~l~~L~~L~l~~C~~L~~l~~~~~~~~l~~L~~L~i~~ 567 (937)
+....+. .+++|+.|++.+ +-+.++-+ ..+..+ .|++|.+..
T Consensus 407 I~krAfs------gl~~LE~LdL~~-NaiaSIq~-nAFe~m-~Lk~Lv~nS 448 (873)
T KOG4194|consen 407 IPKRAFS------GLEALEHLDLGD-NAIASIQP-NAFEPM-ELKELVMNS 448 (873)
T ss_pred cchhhhc------cCcccceecCCC-Ccceeecc-cccccc-hhhhhhhcc
Confidence 6665544 677788887777 44555533 344555 667766654
No 11
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.80 E-value=1.7e-21 Score=204.30 Aligned_cols=365 Identities=17% Similarity=0.190 Sum_probs=228.1
Q ss_pred ccCCCcEEEccCCCCc--cCCccc-CCCccceeeecCCcccccCChhhhcCCCCccEEEecCCcCcccCccccCCCCCCE
Q 002313 208 IDEAPTAISIPFRGIY--ELPERL-GFLKLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHSLPSSLGCLINLRT 284 (937)
Q Consensus 208 ~~~~l~~l~l~~~~~~--~l~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~lp~~i~~l~~Lr~ 284 (937)
.++.+|.+++++|++. .+|.+. .|+.++-|.+.... ...+|+.. +.+.+|+.|.+.+|++.++-..+..|+.||.
T Consensus 5 VLpFVrGvDfsgNDFsg~~FP~~v~qMt~~~WLkLnrt~-L~~vPeEL-~~lqkLEHLs~~HN~L~~vhGELs~Lp~LRs 82 (1255)
T KOG0444|consen 5 VLPFVRGVDFSGNDFSGDRFPHDVEQMTQMTWLKLNRTK-LEQVPEEL-SRLQKLEHLSMAHNQLISVHGELSDLPRLRS 82 (1255)
T ss_pred ccceeecccccCCcCCCCcCchhHHHhhheeEEEechhh-hhhChHHH-HHHhhhhhhhhhhhhhHhhhhhhccchhhHH
Confidence 4567888888888876 477776 57778877775543 34677764 7788888888888888877777888888888
Q ss_pred EEccCCcccC---cccccCCCCCcEEecccCcCcccCcccccCccCCEEEecCCCCCcccChhhhcCCCCCcEEEcCCCc
Q 002313 285 LSLENCLVVD---VAIIGDLKKLEILSLKHSSIEQLPREIGQLTCLKLLDLSNCSKLKEIRPNVISNLTRLEELYMGNSF 361 (937)
Q Consensus 285 L~L~~~~~~~---l~~i~~L~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~l~~L~~L~~L~l~~~~ 361 (937)
+.++.|+++. +..|.++..|.+|||++|++++.|.++..-+++-+|++++ +.+..+|...+-+|+.|-.|++++|.
T Consensus 83 v~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~EvP~~LE~AKn~iVLNLS~-N~IetIPn~lfinLtDLLfLDLS~Nr 161 (1255)
T KOG0444|consen 83 VIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLREVPTNLEYAKNSIVLNLSY-NNIETIPNSLFINLTDLLFLDLSNNR 161 (1255)
T ss_pred HhhhccccccCCCCchhcccccceeeecchhhhhhcchhhhhhcCcEEEEccc-CccccCCchHHHhhHhHhhhccccch
Confidence 8888887653 2778888888888888888888888888888888888888 45888888777788888888888776
Q ss_pred ccceecCCCCCChhhhcCCCCCCeEEeecCCCCCCCccccccccceeEEEecCcCCCCCCcCCcceEEEecccccchhhh
Q 002313 362 TQWKVEGQSNASLGELKQLSRLTTLEVHIPDAQVMPQDLVFVELERFRICIGDVWSWSDGYETSKTLKLQLNNSTYLGYG 441 (937)
Q Consensus 362 ~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~ 441 (937)
.. ..+..++.|.+|+.|.+++|.+..+.-. .++
T Consensus 162 Le--------~LPPQ~RRL~~LqtL~Ls~NPL~hfQLr-QLP-------------------------------------- 194 (1255)
T KOG0444|consen 162 LE--------MLPPQIRRLSMLQTLKLSNNPLNHFQLR-QLP-------------------------------------- 194 (1255)
T ss_pred hh--------hcCHHHHHHhhhhhhhcCCChhhHHHHh-cCc--------------------------------------
Confidence 53 5667777788888888887754321100 000
Q ss_pred HHHHhhcccccccccccC-hhhhhhcccchhhcccCcEEEeecCCceEEEEccCCccccccccceecccccccccccccc
Q 002313 442 MKMLLKRTEDLHLDELAG-FKNVVHELDDEEGFARLRHLHVHNGPEILHILNSDGRVGTFPLLESLFLHNLINLEKVCDG 520 (937)
Q Consensus 442 ~~~~~~~L~~L~l~~~~~-~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~l~~~~~~ 520 (937)
.+.+|+.|++++... ..+++..+.. +.+|..++++.+ ++..+ +......++|+.|.++++ +++++..+
T Consensus 195 ---smtsL~vLhms~TqRTl~N~Ptsld~---l~NL~dvDlS~N-~Lp~v---Pecly~l~~LrrLNLS~N-~iteL~~~ 263 (1255)
T KOG0444|consen 195 ---SMTSLSVLHMSNTQRTLDNIPTSLDD---LHNLRDVDLSEN-NLPIV---PECLYKLRNLRRLNLSGN-KITELNMT 263 (1255)
T ss_pred ---cchhhhhhhcccccchhhcCCCchhh---hhhhhhcccccc-CCCcc---hHHHhhhhhhheeccCcC-ceeeeecc
Confidence 122333333333222 1122333333 666666666543 33333 223345666666666663 44443111
Q ss_pred cccCCCCCccCCCccEEEEecCCCcccccchhHHHhhccccEEEEcccccchhhhccccccccccCCcccccccccccee
Q 002313 521 KVRLNEDDKSFSNLRIIKVEGCHRVKHLFPFSLVKNLLQLQKVKVTDCTNLKLIVGKESENSAHKNGSISGVYFRKLHFL 600 (937)
Q Consensus 521 ~~~~~~~~~~l~~L~~L~l~~C~~L~~l~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~i~~~~~~~L~~L 600 (937)
.+.-.+|+.|+++. ++|+.+| ..+..++.|+.|.+.+.. +..-. .+.+...+..|+++
T Consensus 264 -------~~~W~~lEtLNlSr-NQLt~LP--~avcKL~kL~kLy~n~Nk-L~FeG-----------iPSGIGKL~~Levf 321 (1255)
T KOG0444|consen 264 -------EGEWENLETLNLSR-NQLTVLP--DAVCKLTKLTKLYANNNK-LTFEG-----------IPSGIGKLIQLEVF 321 (1255)
T ss_pred -------HHHHhhhhhhcccc-chhccch--HHHhhhHHHHHHHhccCc-ccccC-----------CccchhhhhhhHHH
Confidence 12234677777777 6677776 355667777777765532 22110 00111244555555
Q ss_pred eccCCCCccccccCCCCCcccCCCCCCccccCCCCCccccccccccCCCcceeeccCcccceeccCCcccccccCCCccE
Q 002313 601 KLQHLPQLTSSGFDLETPTNTQGSNPGIIAEGDPKDFTSLFNERVVFPSLKKLKLSSINVEKIWLNSFSAIESWGKNLTK 680 (937)
Q Consensus 601 ~l~~c~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~l~~~~~~~~~~~~~~l~~L~~ 680 (937)
...+ .+|+-.|.+ ...++.|+.|.++.+.+..+|.+ .+.++-|+.
T Consensus 322 ~aan-N~LElVPEg-----------------------------lcRC~kL~kL~L~~NrLiTLPea-----IHlL~~l~v 366 (1255)
T KOG0444|consen 322 HAAN-NKLELVPEG-----------------------------LCRCVKLQKLKLDHNRLITLPEA-----IHLLPDLKV 366 (1255)
T ss_pred Hhhc-cccccCchh-----------------------------hhhhHHHHHhcccccceeechhh-----hhhcCCcce
Confidence 5444 344444433 23466777777777777666643 235677777
Q ss_pred EEEeccCCcc
Q 002313 681 LTVEKCGRLK 690 (937)
Q Consensus 681 L~i~~c~~l~ 690 (937)
|++..++++.
T Consensus 367 LDlreNpnLV 376 (1255)
T KOG0444|consen 367 LDLRENPNLV 376 (1255)
T ss_pred eeccCCcCcc
Confidence 7777777775
No 12
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=99.78 E-value=7.3e-20 Score=194.32 Aligned_cols=133 Identities=32% Similarity=0.519 Sum_probs=108.4
Q ss_pred CCcccCCCCCHHHHHHHHHHHhCCC--CCCCchhHHHHHHHHhcCCCchHHHHHHHHhcCC-ChhHHHHHHHHhhcCCCC
Q 002313 7 SEDFLDWLLSNEEASHLFEKIVGHS--AKKSDFETIGVEIVAKCGGLPIAIKTIANALKNK-SPRIWKDAVNQLSNSNPR 83 (937)
Q Consensus 7 ~~~~~l~~L~~~~~~~lf~~~~~~~--~~~~~~~~i~~~i~~kc~GlPLai~~ig~~L~~~-~~~~W~~~l~~l~~~~~~ 83 (937)
.+.|+|++|+++||++||++.|+.. ..++.+.+++++|+++|+|+||||+++|+.|+.+ +..+|+++++++......
T Consensus 149 ~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLal~~~a~~l~~~~~~~~w~~~~~~l~~~~~~ 228 (287)
T PF00931_consen 149 DKVIELEPLSEEEALELFKKRAGRKESESPEDLEDLAKEIVEKCGGLPLALKLIASYLRSKSTVDEWEEALEELENSLRE 228 (287)
T ss_dssp EEEEECSS--HHHHHHHHHHHHTSHS----TTSCTHHHHHHHHTTT-HHHHHHHHHHHHHHHSSSSHHHHHHHHHHCHTC
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 5689999999999999999999543 3567778999999999999999999999999766 889999999998765432
Q ss_pred Cccccccc-cccccccccccCchhHHHHHHHhcCCCCCCcccHHHHHHHHhhcccccCc
Q 002313 84 KIQGMDAD-LSSIELSYEFLKCKEVKSLFQLCGLLKDGSRIAVDDLLRYVMGLRLLTNA 141 (937)
Q Consensus 84 ~~~~~~~~-~~~l~~sY~~L~~~~lk~cfl~~~~fp~~~~i~~~~li~~w~a~g~~~~~ 141 (937)
..+.... +.++.+||+.||.+ +|+||+|||+||+++.|+++.+|++|++|||++..
T Consensus 229 -~~~~~~~~~~~l~~s~~~L~~~-~~~~f~~L~~f~~~~~i~~~~li~lW~~e~~i~~~ 285 (287)
T PF00931_consen 229 -SRDYDRSVFSALELSYDSLPDE-LRRCFLYLSIFPEGVPIPRERLIRLWVAEGFISSK 285 (287)
T ss_dssp -SSGSCHHHHHHHHHHHHSSHTC-CHHHHHHGGGSGTTS-EEHHHHHHHHTT-HHTC--
T ss_pred -cccccccccccceechhcCCcc-HHHHHhhCcCCCCCceECHHHHHHHHHHCCCCccc
Confidence 2222333 88999999999997 99999999999999999999999999999999753
No 13
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.75 E-value=2.3e-21 Score=193.60 Aligned_cols=192 Identities=26% Similarity=0.389 Sum_probs=129.8
Q ss_pred ccCCCcEEEccCCCCccCCccc-CCCccceeeecCCcccccCChhhhcCCCCccEEEecCCcCcccCccccCCCCCCEEE
Q 002313 208 IDEAPTAISIPFRGIYELPERL-GFLKLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHSLPSSLGCLINLRTLS 286 (937)
Q Consensus 208 ~~~~l~~l~l~~~~~~~l~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~lp~~i~~l~~Lr~L~ 286 (937)
....+..++.+++++..+|..+ ....++.|++++|+.. ++|+++ +.+..|..|+..+|++.++|.+++++..|..|+
T Consensus 89 ~l~~l~~l~vs~n~ls~lp~~i~s~~~l~~l~~s~n~~~-el~~~i-~~~~~l~dl~~~~N~i~slp~~~~~~~~l~~l~ 166 (565)
T KOG0472|consen 89 ELEALKSLNVSHNKLSELPEQIGSLISLVKLDCSSNELK-ELPDSI-GRLLDLEDLDATNNQISSLPEDMVNLSKLSKLD 166 (565)
T ss_pred HHHHHHHhhcccchHhhccHHHhhhhhhhhhhcccccee-ecCchH-HHHhhhhhhhccccccccCchHHHHHHHHHHhh
Confidence 3455666677777777777666 4667777777766643 455553 566677777777777777777777777777777
Q ss_pred ccCCcccCc-ccccCCCCCcEEecccCcCcccCcccccCccCCEEEecCCCCCcccChhhhcCCCCCcEEEcCCCcccce
Q 002313 287 LENCLVVDV-AIIGDLKKLEILSLKHSSIEQLPREIGQLTCLKLLDLSNCSKLKEIRPNVISNLTRLEELYMGNSFTQWK 365 (937)
Q Consensus 287 L~~~~~~~l-~~i~~L~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~l~~L~~L~~L~l~~~~~~~~ 365 (937)
+.+|.++.+ +..-+++.|++||...|-++.+|++++.+.+|..|++.. +++..+|. |+.+..|.+|+++.|++.
T Consensus 167 ~~~n~l~~l~~~~i~m~~L~~ld~~~N~L~tlP~~lg~l~~L~~LyL~~-Nki~~lPe--f~gcs~L~Elh~g~N~i~-- 241 (565)
T KOG0472|consen 167 LEGNKLKALPENHIAMKRLKHLDCNSNLLETLPPELGGLESLELLYLRR-NKIRFLPE--FPGCSLLKELHVGENQIE-- 241 (565)
T ss_pred ccccchhhCCHHHHHHHHHHhcccchhhhhcCChhhcchhhhHHHHhhh-cccccCCC--CCccHHHHHHHhcccHHH--
Confidence 777777665 444457777777777777777777777777777777777 45777773 677777777777766554
Q ss_pred ecCCCCCChhhhcCCCCCCeEEeecCCCCCCCccc-cccccceeEEE
Q 002313 366 VEGQSNASLGELKQLSRLTTLEVHIPDAQVMPQDL-VFVELERFRIC 411 (937)
Q Consensus 366 ~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~-~~~~L~~l~l~ 411 (937)
-...+.++++.+|..|++..+.+..+|.++ ...+|++|.++
T Consensus 242 -----~lpae~~~~L~~l~vLDLRdNklke~Pde~clLrsL~rLDlS 283 (565)
T KOG0472|consen 242 -----MLPAEHLKHLNSLLVLDLRDNKLKEVPDEICLLRSLERLDLS 283 (565)
T ss_pred -----hhHHHHhcccccceeeeccccccccCchHHHHhhhhhhhccc
Confidence 122344557888888888888888777765 34445555544
No 14
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.73 E-value=4.2e-20 Score=203.76 Aligned_cols=102 Identities=30% Similarity=0.365 Sum_probs=60.8
Q ss_pred CccceeeecCCcccccCChhhhcCCCCccEEEecCCcCcccCccccCCCCCCEEEccCCcccCc-ccccCCCCCcEEecc
Q 002313 232 LKLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHSLPSSLGCLINLRTLSLENCLVVDV-AIIGDLKKLEILSLK 310 (937)
Q Consensus 232 ~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~lp~~i~~l~~Lr~L~L~~~~~~~l-~~i~~L~~L~~L~L~ 310 (937)
-+|++|++++|.. ...|..+ ..+.+|+.|+++.|.|.+.|.+++++.+|++|.|.+|.+..+ .++..+++|++|+++
T Consensus 45 v~L~~l~lsnn~~-~~fp~~i-t~l~~L~~ln~s~n~i~~vp~s~~~~~~l~~lnL~~n~l~~lP~~~~~lknl~~LdlS 122 (1081)
T KOG0618|consen 45 VKLKSLDLSNNQI-SSFPIQI-TLLSHLRQLNLSRNYIRSVPSSCSNMRNLQYLNLKNNRLQSLPASISELKNLQYLDLS 122 (1081)
T ss_pred eeeEEeecccccc-ccCCchh-hhHHHHhhcccchhhHhhCchhhhhhhcchhheeccchhhcCchhHHhhhcccccccc
Confidence 3466666655543 2344433 455666666666666666666666666666666666665554 566666666666666
Q ss_pred cCcCcccCcccccCccCCEEEecCC
Q 002313 311 HSSIEQLPREIGQLTCLKLLDLSNC 335 (937)
Q Consensus 311 ~~~l~~lp~~i~~L~~L~~L~l~~~ 335 (937)
+|.+..+|.-+..+..+..++.+++
T Consensus 123 ~N~f~~~Pl~i~~lt~~~~~~~s~N 147 (1081)
T KOG0618|consen 123 FNHFGPIPLVIEVLTAEEELAASNN 147 (1081)
T ss_pred hhccCCCchhHHhhhHHHHHhhhcc
Confidence 6666666666666666666655554
No 15
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.52 E-value=3.6e-16 Score=138.15 Aligned_cols=150 Identities=23% Similarity=0.378 Sum_probs=100.0
Q ss_pred cCCCcEEEccCCCCccCCccc-CCCccceeeecCCcccccCChhhhcCCCCccEEEecCCcCcccCccccCCCCCCEEEc
Q 002313 209 DEAPTAISIPFRGIYELPERL-GFLKLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHSLPSSLGCLINLRTLSL 287 (937)
Q Consensus 209 ~~~l~~l~l~~~~~~~l~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~lp~~i~~l~~Lr~L~L 287 (937)
...+.++.+++|++..+|+.+ .+.+|++|++++|. ..++|.++ +.+.+||.|++.-|++..+|..|+.++-|++||+
T Consensus 32 ~s~ITrLtLSHNKl~~vppnia~l~nlevln~~nnq-ie~lp~~i-ssl~klr~lnvgmnrl~~lprgfgs~p~levldl 109 (264)
T KOG0617|consen 32 MSNITRLTLSHNKLTVVPPNIAELKNLEVLNLSNNQ-IEELPTSI-SSLPKLRILNVGMNRLNILPRGFGSFPALEVLDL 109 (264)
T ss_pred hhhhhhhhcccCceeecCCcHHHhhhhhhhhcccch-hhhcChhh-hhchhhhheecchhhhhcCccccCCCchhhhhhc
Confidence 445666777777777777666 56677777776665 34566664 6677777777777766667777777777777777
Q ss_pred cCCcccC--c-ccccCCCCCcEEecccCcCcccCcccccCccCCEEEecCCCCCcccChhhhcCCCCCcEEEcCCCcc
Q 002313 288 ENCLVVD--V-AIIGDLKKLEILSLKHSSIEQLPREIGQLTCLKLLDLSNCSKLKEIRPNVISNLTRLEELYMGNSFT 362 (937)
Q Consensus 288 ~~~~~~~--l-~~i~~L~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~l~~L~~L~~L~l~~~~~ 362 (937)
.+|.+.. + ..|..+..|+.|++++|.++-+|+.+++|++||.|.+.. +.+-.+|.. ++.++.|++|++.+|..
T Consensus 110 tynnl~e~~lpgnff~m~tlralyl~dndfe~lp~dvg~lt~lqil~lrd-ndll~lpke-ig~lt~lrelhiqgnrl 185 (264)
T KOG0617|consen 110 TYNNLNENSLPGNFFYMTTLRALYLGDNDFEILPPDVGKLTNLQILSLRD-NDLLSLPKE-IGDLTRLRELHIQGNRL 185 (264)
T ss_pred cccccccccCCcchhHHHHHHHHHhcCCCcccCChhhhhhcceeEEeecc-CchhhCcHH-HHHHHHHHHHhccccee
Confidence 7766542 2 455666666677777777777777777777777777766 335666665 67777777777666654
No 16
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.52 E-value=3.4e-16 Score=138.33 Aligned_cols=167 Identities=24% Similarity=0.388 Sum_probs=148.0
Q ss_pred CccCCcccCCCccceeeecCCcccccCChhhhcCCCCccEEEecCCcCcccCccccCCCCCCEEEccCCcccCc-ccccC
Q 002313 222 IYELPERLGFLKLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHSLPSSLGCLINLRTLSLENCLVVDV-AIIGD 300 (937)
Q Consensus 222 ~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~lp~~i~~l~~Lr~L~L~~~~~~~l-~~i~~ 300 (937)
+..++..+.+.++..|.+++|... .+|+.+ ..+++|++|++++|+++++|.+++.++.||.|++.-|++..+ ..||.
T Consensus 23 f~~~~gLf~~s~ITrLtLSHNKl~-~vppni-a~l~nlevln~~nnqie~lp~~issl~klr~lnvgmnrl~~lprgfgs 100 (264)
T KOG0617|consen 23 FEELPGLFNMSNITRLTLSHNKLT-VVPPNI-AELKNLEVLNLSNNQIEELPTSISSLPKLRILNVGMNRLNILPRGFGS 100 (264)
T ss_pred HhhcccccchhhhhhhhcccCcee-ecCCcH-HHhhhhhhhhcccchhhhcChhhhhchhhhheecchhhhhcCccccCC
Confidence 455677778899999999998765 566665 899999999999999999999999999999999999998766 89999
Q ss_pred CCCCcEEecccCcCc--ccCcccccCccCCEEEecCCCCCcccChhhhcCCCCCcEEEcCCCcccceecCCCCCChhhhc
Q 002313 301 LKKLEILSLKHSSIE--QLPREIGQLTCLKLLDLSNCSKLKEIRPNVISNLTRLEELYMGNSFTQWKVEGQSNASLGELK 378 (937)
Q Consensus 301 L~~L~~L~L~~~~l~--~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~l~ 378 (937)
++-|++||+.+|++. .+|..+-.++.|+.|.+++ +.++-+|++ ++++++||.|.+.+|... ..+.+++
T Consensus 101 ~p~levldltynnl~e~~lpgnff~m~tlralyl~d-ndfe~lp~d-vg~lt~lqil~lrdndll--------~lpkeig 170 (264)
T KOG0617|consen 101 FPALEVLDLTYNNLNENSLPGNFFYMTTLRALYLGD-NDFEILPPD-VGKLTNLQILSLRDNDLL--------SLPKEIG 170 (264)
T ss_pred CchhhhhhccccccccccCCcchhHHHHHHHHHhcC-CCcccCChh-hhhhcceeEEeeccCchh--------hCcHHHH
Confidence 999999999999876 7899999999999999999 568899998 999999999999888654 5678888
Q ss_pred CCCCCCeEEeecCCCCCCCccc
Q 002313 379 QLSRLTTLEVHIPDAQVMPQDL 400 (937)
Q Consensus 379 ~l~~L~~L~l~~~~~~~~~~~~ 400 (937)
.++.|+.|++.++....+|+++
T Consensus 171 ~lt~lrelhiqgnrl~vlppel 192 (264)
T KOG0617|consen 171 DLTRLRELHIQGNRLTVLPPEL 192 (264)
T ss_pred HHHHHHHHhcccceeeecChhh
Confidence 9999999999999998888764
No 17
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.42 E-value=1.3e-12 Score=150.48 Aligned_cols=116 Identities=16% Similarity=0.154 Sum_probs=68.4
Q ss_pred CccEEEecCCcCcccCccccCCCCCCEEEccCCcccCcccccCCCCCcEEecccCcCcccCcccccCccCCEEEecCCCC
Q 002313 258 ELRVLDLTGFRFHSLPSSLGCLINLRTLSLENCLVVDVAIIGDLKKLEILSLKHSSIEQLPREIGQLTCLKLLDLSNCSK 337 (937)
Q Consensus 258 ~Lr~L~L~~~~~~~lp~~i~~l~~Lr~L~L~~~~~~~l~~i~~L~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~l~~~~~ 337 (937)
.-.+|+++++.++++|+.+. .+|+.|++.+|.++.++.. +++|++|++++|+++.+|.. .++|++|++++| .
T Consensus 202 ~~~~LdLs~~~LtsLP~~l~--~~L~~L~L~~N~Lt~LP~l--p~~Lk~LdLs~N~LtsLP~l---p~sL~~L~Ls~N-~ 273 (788)
T PRK15387 202 GNAVLNVGESGLTTLPDCLP--AHITTLVIPDNNLTSLPAL--PPELRTLEVSGNQLTSLPVL---PPGLLELSIFSN-P 273 (788)
T ss_pred CCcEEEcCCCCCCcCCcchh--cCCCEEEccCCcCCCCCCC--CCCCcEEEecCCccCcccCc---ccccceeeccCC-c
Confidence 45567777777777776654 3677777777776665432 46677777777777776643 346667777664 3
Q ss_pred CcccChhhhcCCCCCcEEEcCCCcccceecCCCCCChhhhcCCCCCCeEEeecCCCCCC
Q 002313 338 LKEIRPNVISNLTRLEELYMGNSFTQWKVEGQSNASLGELKQLSRLTTLEVHIPDAQVM 396 (937)
Q Consensus 338 l~~lp~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~ 396 (937)
+..+|.. ..+|+.|++++|.+. ..+. ..++|+.|++++|.+..+
T Consensus 274 L~~Lp~l----p~~L~~L~Ls~N~Lt--------~LP~---~p~~L~~LdLS~N~L~~L 317 (788)
T PRK15387 274 LTHLPAL----PSGLCKLWIFGNQLT--------SLPV---LPPGLQELSVSDNQLASL 317 (788)
T ss_pred hhhhhhc----hhhcCEEECcCCccc--------cccc---cccccceeECCCCccccC
Confidence 5555542 245666666666443 0111 124566666666655443
No 18
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.40 E-value=1.2e-14 Score=145.81 Aligned_cols=289 Identities=22% Similarity=0.288 Sum_probs=169.8
Q ss_pred CCccCCcccCCCccceeeecCCcccccCChhhhcCCCCccEEEecCCcCccc-CccccCCCCCCEEEccC-CcccCc--c
Q 002313 221 GIYELPERLGFLKLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHSL-PSSLGCLINLRTLSLEN-CLVVDV--A 296 (937)
Q Consensus 221 ~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~l-p~~i~~l~~Lr~L~L~~-~~~~~l--~ 296 (937)
.+..+|..+. .....+++..|. +..||+.+|+.+++||.|||++|+|+.+ |+.|..+..|-.|-+-+ |+++.+ .
T Consensus 57 GL~eVP~~LP-~~tveirLdqN~-I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~ 134 (498)
T KOG4237|consen 57 GLTEVPANLP-PETVEIRLDQNQ-ISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKG 134 (498)
T ss_pred CcccCcccCC-CcceEEEeccCC-cccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhh
Confidence 3444444431 233444555554 3467777788899999999999998887 88888888887777766 778877 6
Q ss_pred cccCCCCCcEEecccCcCcccC-cccccCccCCEEEecCCCCCcccChhhhcCCCCCcEEEcCCCcccceecCCCCCChh
Q 002313 297 IIGDLKKLEILSLKHSSIEQLP-REIGQLTCLKLLDLSNCSKLKEIRPNVISNLTRLEELYMGNSFTQWKVEGQSNASLG 375 (937)
Q Consensus 297 ~i~~L~~L~~L~L~~~~l~~lp-~~i~~L~~L~~L~l~~~~~l~~lp~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~ 375 (937)
.|++|..|+.|.+.-+.+.-++ ..+..|++|..|.+.+ +.+..++.+.+..+.+++++.+..+...
T Consensus 135 ~F~gL~slqrLllNan~i~Cir~~al~dL~~l~lLslyD-n~~q~i~~~tf~~l~~i~tlhlA~np~i------------ 201 (498)
T KOG4237|consen 135 AFGGLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYD-NKIQSICKGTFQGLAAIKTLHLAQNPFI------------ 201 (498)
T ss_pred HhhhHHHHHHHhcChhhhcchhHHHHHHhhhcchhcccc-hhhhhhccccccchhccchHhhhcCccc------------
Confidence 7888888888888888777665 4577888888888887 4577777766778888888876655322
Q ss_pred hhcCCCCCCe----EEeecCCCCCCCccccccccceeEEEecCcCCCCCCcCCcceEEEecccccchhhhHHHHhhcccc
Q 002313 376 ELKQLSRLTT----LEVHIPDAQVMPQDLVFVELERFRICIGDVWSWSDGYETSKTLKLQLNNSTYLGYGMKMLLKRTED 451 (937)
Q Consensus 376 ~l~~l~~L~~----L~l~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~L~~ 451 (937)
...+++.+.. ..++.....- .....+.+.++..... +. ..-.++.
T Consensus 202 cdCnL~wla~~~a~~~ietsgarc----~~p~rl~~~Ri~q~~a-----------------~k----------f~c~~es 250 (498)
T KOG4237|consen 202 CDCNLPWLADDLAMNPIETSGARC----VSPYRLYYKRINQEDA-----------------RK----------FLCSLES 250 (498)
T ss_pred cccccchhhhHHhhchhhccccee----cchHHHHHHHhcccch-----------------hh----------hhhhHHh
Confidence 1111111110 0000000000 0001111111100000 00 0000111
Q ss_pred c--ccccccChhhhhhcccchhhcccCcEEEeecCCceEEEEccCCccccccccceecccccccccccccccccCCCCCc
Q 002313 452 L--HLDELAGFKNVVHELDDEEGFARLRHLHVHNGPEILHILNSDGRVGTFPLLESLFLHNLINLEKVCDGKVRLNEDDK 529 (937)
Q Consensus 452 L--~l~~~~~~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~l~~~~~~~~~~~~~~~ 529 (937)
+ .+..-.......+. ..+..+++|++|+++++ .++.+. +.+......+++|.+.+ ++++.+..+.+.
T Consensus 251 l~s~~~~~d~~d~~cP~-~cf~~L~~L~~lnlsnN-~i~~i~--~~aFe~~a~l~eL~L~~-N~l~~v~~~~f~------ 319 (498)
T KOG4237|consen 251 LPSRLSSEDFPDSICPA-KCFKKLPNLRKLNLSNN-KITRIE--DGAFEGAAELQELYLTR-NKLEFVSSGMFQ------ 319 (498)
T ss_pred HHHhhccccCcCCcChH-HHHhhcccceEeccCCC-ccchhh--hhhhcchhhhhhhhcCc-chHHHHHHHhhh------
Confidence 1 00000000000000 01245889999999886 344432 33446677888888887 467766555544
Q ss_pred cCCCccEEEEecCCCcccccchhHHHhhccccEEEEccc
Q 002313 530 SFSNLRIIKVEGCHRVKHLFPFSLVKNLLQLQKVKVTDC 568 (937)
Q Consensus 530 ~l~~L~~L~l~~C~~L~~l~~~~~~~~l~~L~~L~i~~c 568 (937)
.+..|+.|++.+ ++++.+.| +.++.+.+|.+|.+-..
T Consensus 320 ~ls~L~tL~L~~-N~it~~~~-~aF~~~~~l~~l~l~~N 356 (498)
T KOG4237|consen 320 GLSGLKTLSLYD-NQITTVAP-GAFQTLFSLSTLNLLSN 356 (498)
T ss_pred ccccceeeeecC-CeeEEEec-ccccccceeeeeehccC
Confidence 678899999999 78888866 56788889999988653
No 19
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=99.37 E-value=5.2e-15 Score=149.91 Aligned_cols=298 Identities=19% Similarity=0.263 Sum_probs=196.7
Q ss_pred cccceecccccccccccccccccCCCCCccCCCccEEEEecCCCcccccchhHHHhhccccEEEEcccccchhhhccccc
Q 002313 501 PLLESLFLHNLINLEKVCDGKVRLNEDDKSFSNLRIIKVEGCHRVKHLFPFSLVKNLLQLQKVKVTDCTNLKLIVGKESE 580 (937)
Q Consensus 501 p~L~~L~l~~~~~l~~~~~~~~~~~~~~~~l~~L~~L~l~~C~~L~~l~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~ 580 (937)
..|++|.+.+|.....-....+ ....|++++|.+.+|.++++-........++.|+.|.+..|..+++.......
T Consensus 138 g~lk~LSlrG~r~v~~sslrt~-----~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la 212 (483)
T KOG4341|consen 138 GFLKELSLRGCRAVGDSSLRTF-----ASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLA 212 (483)
T ss_pred cccccccccccccCCcchhhHH-----hhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHH
Confidence 4688899988865443222211 35678999999999998888766667778889999999999988887654332
Q ss_pred cccccCCccccccccccceeeccCCCCccccccCCCCCcccCCCCCCccccCCCCCccccccccccCCCcceeeccCc--
Q 002313 581 NSAHKNGSISGVYFRKLHFLKLQHLPQLTSSGFDLETPTNTQGSNPGIIAEGDPKDFTSLFNERVVFPSLKKLKLSSI-- 658 (937)
Q Consensus 581 ~~~~~~~~i~~~~~~~L~~L~l~~c~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c-- 658 (937)
..+|+|++++++.||.+..-... ........++.+...||
T Consensus 213 -----------~gC~kL~~lNlSwc~qi~~~gv~---------------------------~~~rG~~~l~~~~~kGC~e 254 (483)
T KOG4341|consen 213 -----------EGCRKLKYLNLSWCPQISGNGVQ---------------------------ALQRGCKELEKLSLKGCLE 254 (483)
T ss_pred -----------HhhhhHHHhhhccCchhhcCcch---------------------------HHhccchhhhhhhhccccc
Confidence 27899999999999877661100 00112344667767777
Q ss_pred -ccceeccCCcccccccCCCccEEEEeccCCccccchHHHHhhccccceeeeccccchHHHhccCCCCCCCccccccccc
Q 002313 659 -NVEKIWLNSFSAIESWGKNLTKLTVEKCGRLKFLFSSSMVNGLEQLQQLDISHCKSMNEVINTRVGRDDNMIEMVFPKL 737 (937)
Q Consensus 659 -~l~~~~~~~~~~~~~~l~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~~~~~L 737 (937)
.+..+-. ....++-+.++++..|..+++........++..||.|+.++|..+.......- ....++|
T Consensus 255 ~~le~l~~-----~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq~l~~s~~t~~~d~~l~aL-------g~~~~~L 322 (483)
T KOG4341|consen 255 LELEALLK-----AAAYCLEILKLNLQHCNQLTDEDLWLIACGCHALQVLCYSSCTDITDEVLWAL-------GQHCHNL 322 (483)
T ss_pred ccHHHHHH-----HhccChHhhccchhhhccccchHHHHHhhhhhHhhhhcccCCCCCchHHHHHH-------hcCCCce
Confidence 3332221 12355667777888888887754334455678889999988887655443311 1135888
Q ss_pred ceeeeccCcccccccccCCC-CcccccceeeccCCCceeeccccccccccccccCccCcCccccccccCCCccEEEecCC
Q 002313 738 VSLQLSHLPKLTRFGIGDSV-EFPSLCQLQIACCPNLKIFICSCTEEMSSEKNIHTTQTQPLFDEKVGLPKLEVLRIDGM 816 (937)
Q Consensus 738 ~~L~i~~c~~l~~~~~~~~~-~l~~L~~L~i~~C~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~L~~L~l~~c 816 (937)
+.|.+..|..++......+. +++.|+.+++.+|-...... +. ....++|.|+.|.+++|
T Consensus 323 ~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~t-----------------L~---sls~~C~~lr~lslshc 382 (483)
T KOG4341|consen 323 QVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGT-----------------LA---SLSRNCPRLRVLSLSHC 382 (483)
T ss_pred EEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhh-----------------Hh---hhccCCchhccCChhhh
Confidence 99999998887776554443 57888888888886664211 11 11137888899999888
Q ss_pred CCcceeccCCCC--cccCCCCcEEEEEcCCCcccccchhHHHhcCCCcEEeeccccccee
Q 002313 817 DNLRKIWHHQLA--LDSFTKLKDLDVEYCDQLLSIFPSNMLRRLERLEHLAVSECGSIEE 874 (937)
Q Consensus 817 ~~l~~l~~~~~~--~~~l~~L~~L~i~~C~~L~~~~p~~~l~~l~~L~~L~i~~C~~l~~ 874 (937)
..+++.....+. ..+...|..+.+++||.+++. ..+-+..+++||.+++.+|..+..
T Consensus 383 e~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~-~Le~l~~c~~Leri~l~~~q~vtk 441 (483)
T KOG4341|consen 383 ELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDA-TLEHLSICRNLERIELIDCQDVTK 441 (483)
T ss_pred hhhhhhhhhhhhhccccccccceeeecCCCCchHH-HHHHHhhCcccceeeeechhhhhh
Confidence 777655211111 123567888888888888773 333456788888888888877754
No 20
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=99.36 E-value=4.2e-14 Score=143.43 Aligned_cols=67 Identities=19% Similarity=0.297 Sum_probs=32.0
Q ss_pred CccEEEEecCCCcccccchhHHHhhccccEEEEcccccchhhhccccccccccCCccccccccccceeeccCCCCccc
Q 002313 533 NLRIIKVEGCHRVKHLFPFSLVKNLLQLQKVKVTDCTNLKLIVGKESENSAHKNGSISGVYFRKLHFLKLQHLPQLTS 610 (937)
Q Consensus 533 ~L~~L~l~~C~~L~~l~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~i~~~~~~~L~~L~l~~c~~L~~ 610 (937)
.|+.|.++||.....-+......++|++++|.+.+|..+++....... ..+++|+.+.+..|+++++
T Consensus 139 ~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla-----------~~C~~l~~l~L~~c~~iT~ 205 (483)
T KOG4341|consen 139 FLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLA-----------RYCRKLRHLNLHSCSSITD 205 (483)
T ss_pred ccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHH-----------HhcchhhhhhhcccchhHH
Confidence 455555555554444333333445555555555555554443322111 1455555555555555544
No 21
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.34 E-value=4.1e-12 Score=147.50 Aligned_cols=137 Identities=15% Similarity=0.320 Sum_probs=77.8
Q ss_pred CCCcEEEccCCCCccCCcccCCCccceeeecCCcccccCChhhhcCCCCccEEEecCCcCcccCccccCCCCCCEEEccC
Q 002313 210 EAPTAISIPFRGIYELPERLGFLKLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHSLPSSLGCLINLRTLSLEN 289 (937)
Q Consensus 210 ~~l~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~lp~~i~~l~~Lr~L~L~~ 289 (937)
.+...+++.++.+..+|..+ .++++.|++.+|.+. .+|..++ .+|++|++++|.++++|..+. .+|+.|++++
T Consensus 178 ~~~~~L~L~~~~LtsLP~~I-p~~L~~L~Ls~N~Lt-sLP~~l~---~nL~~L~Ls~N~LtsLP~~l~--~~L~~L~Ls~ 250 (754)
T PRK15370 178 NNKTELRLKILGLTTIPACI-PEQITTLILDNNELK-SLPENLQ---GNIKTLYANSNQLTSIPATLP--DTIQEMELSI 250 (754)
T ss_pred cCceEEEeCCCCcCcCCccc-ccCCcEEEecCCCCC-cCChhhc---cCCCEEECCCCccccCChhhh--ccccEEECcC
Confidence 44566667666666666554 245666666666533 5555442 356666777666666665443 3566666666
Q ss_pred CcccCc-ccccCCCCCcEEecccCcCcccCcccccCccCCEEEecCCCCCcccChhhhcCCCCCcEEEcCCCc
Q 002313 290 CLVVDV-AIIGDLKKLEILSLKHSSIEQLPREIGQLTCLKLLDLSNCSKLKEIRPNVISNLTRLEELYMGNSF 361 (937)
Q Consensus 290 ~~~~~l-~~i~~L~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~l~~L~~L~~L~l~~~~ 361 (937)
|.+..+ ..+. .+|++|++++|+++.+|..+. .+|++|++++| .+..+|.. +. .+|+.|++++|.
T Consensus 251 N~L~~LP~~l~--s~L~~L~Ls~N~L~~LP~~l~--~sL~~L~Ls~N-~Lt~LP~~-lp--~sL~~L~Ls~N~ 315 (754)
T PRK15370 251 NRITELPERLP--SALQSLDLFHNKISCLPENLP--EELRYLSVYDN-SIRTLPAH-LP--SGITHLNVQSNS 315 (754)
T ss_pred CccCcCChhHh--CCCCEEECcCCccCccccccC--CCCcEEECCCC-ccccCccc-ch--hhHHHHHhcCCc
Confidence 666554 2222 356666666666666665443 35666666663 35555543 21 245555555543
No 22
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.33 E-value=3.8e-11 Score=138.54 Aligned_cols=179 Identities=19% Similarity=0.132 Sum_probs=112.1
Q ss_pred cchhhhhhccCCCcEEEccCCCCccCCcccCCCccceeeecCCcccccCChhhhcCCCCccEEEecCCcCcccCccccCC
Q 002313 200 DLKEELDKIDEAPTAISIPFRGIYELPERLGFLKLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHSLPSSLGCL 279 (937)
Q Consensus 200 ~~~~~~~~~~~~l~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~lp~~i~~l 279 (937)
.+..+|......++.|++..|.+..+|.. .++|++|++.+|.+. .+|. ..++|+.|++++|.+..+|..+
T Consensus 212 ~LtsLP~~l~~~L~~L~L~~N~Lt~LP~l--p~~Lk~LdLs~N~Lt-sLP~----lp~sL~~L~Ls~N~L~~Lp~lp--- 281 (788)
T PRK15387 212 GLTTLPDCLPAHITTLVIPDNNLTSLPAL--PPELRTLEVSGNQLT-SLPV----LPPGLLELSIFSNPLTHLPALP--- 281 (788)
T ss_pred CCCcCCcchhcCCCEEEccCCcCCCCCCC--CCCCcEEEecCCccC-cccC----cccccceeeccCCchhhhhhch---
Confidence 45555665566788888888888877754 467888888777544 5553 2457778888888877776532
Q ss_pred CCCCEEEccCCcccCcccccCCCCCcEEecccCcCcccCcccccCccCCEEEecCCCCCcccChhhhcCCCCCcEEEcCC
Q 002313 280 INLRTLSLENCLVVDVAIIGDLKKLEILSLKHSSIEQLPREIGQLTCLKLLDLSNCSKLKEIRPNVISNLTRLEELYMGN 359 (937)
Q Consensus 280 ~~Lr~L~L~~~~~~~l~~i~~L~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~l~~L~~L~~L~l~~ 359 (937)
.+|+.|++++|+++.++. .+++|++|++++|.++.+|... .+|+.|++++| .+..+|.. ..+|++|++++
T Consensus 282 ~~L~~L~Ls~N~Lt~LP~--~p~~L~~LdLS~N~L~~Lp~lp---~~L~~L~Ls~N-~L~~LP~l----p~~Lq~LdLS~ 351 (788)
T PRK15387 282 SGLCKLWIFGNQLTSLPV--LPPGLQELSVSDNQLASLPALP---SELCKLWAYNN-QLTSLPTL----PSGLQELSVSD 351 (788)
T ss_pred hhcCEEECcCCccccccc--cccccceeECCCCccccCCCCc---ccccccccccC-cccccccc----ccccceEecCC
Confidence 567777888887776643 2467888888888777776532 34666677763 46666641 14677777777
Q ss_pred CcccceecCCCCCChhhhcCCCCCCeEEeecCCCCCCCccccccccceeEEE
Q 002313 360 SFTQWKVEGQSNASLGELKQLSRLTTLEVHIPDAQVMPQDLVFVELERFRIC 411 (937)
Q Consensus 360 ~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~l~l~ 411 (937)
|.+. . .+ .+ ..+|+.|+++.|.+..+|... .+|+.|.+.
T Consensus 352 N~Ls----~----LP-~l--p~~L~~L~Ls~N~L~~LP~l~--~~L~~LdLs 390 (788)
T PRK15387 352 NQLA----S----LP-TL--PSELYKLWAYNNRLTSLPALP--SGLKELIVS 390 (788)
T ss_pred CccC----C----CC-CC--CcccceehhhccccccCcccc--cccceEEec
Confidence 7554 1 11 11 134566666666666555322 345555544
No 23
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.33 E-value=1.5e-11 Score=142.86 Aligned_cols=186 Identities=21% Similarity=0.290 Sum_probs=139.7
Q ss_pred cchhhhhhccCCCcEEEccCCCCccCCcccCCCccceeeecCCcccccCChhhhcCCCCccEEEecCCcCcccCccccCC
Q 002313 200 DLKEELDKIDEAPTAISIPFRGIYELPERLGFLKLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHSLPSSLGCL 279 (937)
Q Consensus 200 ~~~~~~~~~~~~l~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~lp~~i~~l 279 (937)
++..+|..++..++.|++++|.+..+|..+. .+|++|++.+|.+. .+|..+ ..+|+.|+|++|.+..+|..+.
T Consensus 189 ~LtsLP~~Ip~~L~~L~Ls~N~LtsLP~~l~-~nL~~L~Ls~N~Lt-sLP~~l---~~~L~~L~Ls~N~L~~LP~~l~-- 261 (754)
T PRK15370 189 GLTTIPACIPEQITTLILDNNELKSLPENLQ-GNIKTLYANSNQLT-SIPATL---PDTIQEMELSINRITELPERLP-- 261 (754)
T ss_pred CcCcCCcccccCCcEEEecCCCCCcCChhhc-cCCCEEECCCCccc-cCChhh---hccccEEECcCCccCcCChhHh--
Confidence 4555566667789999999999999987763 68999999988754 678654 3479999999999999998775
Q ss_pred CCCCEEEccCCcccCc-ccccCCCCCcEEecccCcCcccCcccccCccCCEEEecCCCCCcccChhhhcCCCCCcEEEcC
Q 002313 280 INLRTLSLENCLVVDV-AIIGDLKKLEILSLKHSSIEQLPREIGQLTCLKLLDLSNCSKLKEIRPNVISNLTRLEELYMG 358 (937)
Q Consensus 280 ~~Lr~L~L~~~~~~~l-~~i~~L~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~l~~L~~L~~L~l~ 358 (937)
.+|++|++++|.+..+ ..+. .+|++|++++|+++.+|..+. .+|++|++++| .+..+|.. + .++|+.|+++
T Consensus 262 s~L~~L~Ls~N~L~~LP~~l~--~sL~~L~Ls~N~Lt~LP~~lp--~sL~~L~Ls~N-~Lt~LP~~-l--~~sL~~L~Ls 333 (754)
T PRK15370 262 SALQSLDLFHNKISCLPENLP--EELRYLSVYDNSIRTLPAHLP--SGITHLNVQSN-SLTALPET-L--PPGLKTLEAG 333 (754)
T ss_pred CCCCEEECcCCccCccccccC--CCCcEEECCCCccccCcccch--hhHHHHHhcCC-ccccCCcc-c--cccceecccc
Confidence 5899999999998876 3343 589999999999999987654 47889999984 57778764 2 3688999998
Q ss_pred CCcccceecCCCCCChhhhcCCCCCCeEEeecCCCCCCCccccccccceeEEE
Q 002313 359 NSFTQWKVEGQSNASLGELKQLSRLTTLEVHIPDAQVMPQDLVFVELERFRIC 411 (937)
Q Consensus 359 ~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~l~l~ 411 (937)
+|.+. ..+..+. ++|+.|++++|.+..+|..+ ..+|+.|.+.
T Consensus 334 ~N~Lt--------~LP~~l~--~sL~~L~Ls~N~L~~LP~~l-p~~L~~LdLs 375 (754)
T PRK15370 334 ENALT--------SLPASLP--PELQVLDVSKNQITVLPETL-PPTITTLDVS 375 (754)
T ss_pred CCccc--------cCChhhc--CcccEEECCCCCCCcCChhh-cCCcCEEECC
Confidence 88654 1222232 57899999998877666543 2345555543
No 24
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=99.32 E-value=1e-12 Score=154.83 Aligned_cols=296 Identities=20% Similarity=0.259 Sum_probs=170.2
Q ss_pred cCCCcEEEccCCC--CccCCccc--CCCccceeeecCCcccccCChhhhcCCCCccEEEecCCcCcccCccccCCCCCCE
Q 002313 209 DEAPTAISIPFRG--IYELPERL--GFLKLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHSLPSSLGCLINLRT 284 (937)
Q Consensus 209 ~~~l~~l~l~~~~--~~~l~~~~--~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~lp~~i~~l~~Lr~ 284 (937)
...++.+-+..+. +..++..+ .++.||+|++++|....++|.++ +++-+||+|+++++.+..+|.++++|+.|.+
T Consensus 544 ~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I-~~Li~LryL~L~~t~I~~LP~~l~~Lk~L~~ 622 (889)
T KOG4658|consen 544 NPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSI-GELVHLRYLDLSDTGISHLPSGLGNLKKLIY 622 (889)
T ss_pred CCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHH-hhhhhhhcccccCCCccccchHHHHHHhhhe
Confidence 3368888888875 66666643 79999999999999889999886 9999999999999999999999999999999
Q ss_pred EEccCCcc-cCccc-ccCCCCCcEEecccCcCc---ccCcccccCccCCEEEecCCCCCcccChhhhcCCCCCcEEEcCC
Q 002313 285 LSLENCLV-VDVAI-IGDLKKLEILSLKHSSIE---QLPREIGQLTCLKLLDLSNCSKLKEIRPNVISNLTRLEELYMGN 359 (937)
Q Consensus 285 L~L~~~~~-~~l~~-i~~L~~L~~L~L~~~~l~---~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~l~~L~~L~~L~l~~ 359 (937)
|++..+.. ..++. ...+.+||+|.+...... ..-.++.+|.+|+.+....... .+-.. +..++.|+.+...-
T Consensus 623 Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~~~s~--~~~e~-l~~~~~L~~~~~~l 699 (889)
T KOG4658|consen 623 LNLEVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSITISSV--LLLED-LLGMTRLRSLLQSL 699 (889)
T ss_pred eccccccccccccchhhhcccccEEEeeccccccchhhHHhhhcccchhhheeecchh--HhHhh-hhhhHHHHHHhHhh
Confidence 99998863 33333 444888888888765422 1112344555555555433221 11111 23333333222110
Q ss_pred CcccceecCCCCCChhhhcCCCCCCeEEeecCCCCCCCccccccccceeEEEecCcCCCCCCcCCcceEEEecccccchh
Q 002313 360 SFTQWKVEGQSNASLGELKQLSRLTTLEVHIPDAQVMPQDLVFVELERFRICIGDVWSWSDGYETSKTLKLQLNNSTYLG 439 (937)
Q Consensus 360 ~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~l~l~~~~~~~~~ 439 (937)
.. . .......+..+..+.+|+.|.+..+....... .|.......
T Consensus 700 ~~-~---~~~~~~~~~~~~~l~~L~~L~i~~~~~~e~~~------------------~~~~~~~~~-------------- 743 (889)
T KOG4658|consen 700 SI-E---GCSKRTLISSLGSLGNLEELSILDCGISEIVI------------------EWEESLIVL-------------- 743 (889)
T ss_pred hh-c---ccccceeecccccccCcceEEEEcCCCchhhc------------------ccccccchh--------------
Confidence 00 0 01112345556666666666666655432211 111000000
Q ss_pred hhHHHHhhcccccccccccChhhhhhcccchhhcccCcEEEeecCCceEEEEccCC-------cccccccccee-ccccc
Q 002313 440 YGMKMLLKRTEDLHLDELAGFKNVVHELDDEEGFARLRHLHVHNGPEILHILNSDG-------RVGTFPLLESL-FLHNL 511 (937)
Q Consensus 440 ~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~-------~~~~~p~L~~L-~l~~~ 511 (937)
..++++..+.+.++........ ... .|+|+.|.+..|..++.+.+... ...+|.+++.+ .+.+.
T Consensus 744 ----~~f~~l~~~~~~~~~~~r~l~~-~~f---~~~L~~l~l~~~~~~e~~i~~~k~~~~l~~~i~~f~~~~~l~~~~~l 815 (889)
T KOG4658|consen 744 ----LCFPNLSKVSILNCHMLRDLTW-LLF---APHLTSLSLVSCRLLEDIIPKLKALLELKELILPFNKLEGLRMLCSL 815 (889)
T ss_pred ----hhHHHHHHHHhhccccccccch-hhc---cCcccEEEEecccccccCCCHHHHhhhcccEEecccccccceeeecC
Confidence 0133344444444433333211 111 57788888877776665432211 01345555555 35555
Q ss_pred ccccccccccccCCCCCccCCCccEEEEecCCCcccccchhHHHhhccccEEEEccc
Q 002313 512 INLEKVCDGKVRLNEDDKSFSNLRIIKVEGCHRVKHLFPFSLVKNLLQLQKVKVTDC 568 (937)
Q Consensus 512 ~~l~~~~~~~~~~~~~~~~l~~L~~L~l~~C~~L~~l~~~~~~~~l~~L~~L~i~~c 568 (937)
+.+..+..... .++.|+.+.+..||++..+| .+.++.+.+|
T Consensus 816 ~~l~~i~~~~l-------~~~~l~~~~ve~~p~l~~~P---------~~~~~~i~~~ 856 (889)
T KOG4658|consen 816 GGLPQLYWLPL-------SFLKLEELIVEECPKLGKLP---------LLSTLTIVGC 856 (889)
T ss_pred CCCceeEeccc-------CccchhheehhcCcccccCc---------cccccceecc
Confidence 55555433322 24557778888888776654 4556666665
No 25
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.11 E-value=2.3e-12 Score=129.72 Aligned_cols=141 Identities=23% Similarity=0.313 Sum_probs=122.0
Q ss_pred ecccCcchhhhhhccCCCcEEEccCCCCccCCccc--CCCccceeeecCCcccccCChhhhcCCCCccEEEecC-CcCcc
Q 002313 195 IQNVADLKEELDKIDEAPTAISIPFRGIYELPERL--GFLKLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTG-FRFHS 271 (937)
Q Consensus 195 ~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~l~~~~--~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~L~~-~~~~~ 271 (937)
...+.++.++|...+.....+.+..|.|..+|+.. .+++||.|++++|++. .|-++.|..++.|-.|-+.+ |.|+.
T Consensus 52 dCr~~GL~eVP~~LP~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is-~I~p~AF~GL~~l~~Lvlyg~NkI~~ 130 (498)
T KOG4237|consen 52 DCRGKGLTEVPANLPPETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNIS-FIAPDAFKGLASLLSLVLYGNNKITD 130 (498)
T ss_pred EccCCCcccCcccCCCcceEEEeccCCcccCChhhccchhhhceecccccchh-hcChHhhhhhHhhhHHHhhcCCchhh
Confidence 34456788889999999999999999999999876 6899999999999865 45556689999988888777 88999
Q ss_pred cCcc-ccCCCCCCEEEccCCcccCc--ccccCCCCCcEEecccCcCcccCc-ccccCccCCEEEecCCC
Q 002313 272 LPSS-LGCLINLRTLSLENCLVVDV--AIIGDLKKLEILSLKHSSIEQLPR-EIGQLTCLKLLDLSNCS 336 (937)
Q Consensus 272 lp~~-i~~l~~Lr~L~L~~~~~~~l--~~i~~L~~L~~L~L~~~~l~~lp~-~i~~L~~L~~L~l~~~~ 336 (937)
+|.. |+.|..|+.|.+.-|++..+ ..+..+++|..|.+.+|.+..++. .+..+..++++.+..+.
T Consensus 131 l~k~~F~gL~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np 199 (498)
T KOG4237|consen 131 LPKGAFGGLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNP 199 (498)
T ss_pred hhhhHhhhHHHHHHHhcChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCc
Confidence 9864 88999999999999988866 789999999999999999999987 78899999999877654
No 26
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.98 E-value=4.1e-10 Score=106.03 Aligned_cols=130 Identities=25% Similarity=0.356 Sum_probs=45.9
Q ss_pred cCCCCccEEEecCCcCcccCcccc-CCCCCCEEEccCCcccCcccccCCCCCcEEecccCcCcccCccc-ccCccCCEEE
Q 002313 254 EGMTELRVLDLTGFRFHSLPSSLG-CLINLRTLSLENCLVVDVAIIGDLKKLEILSLKHSSIEQLPREI-GQLTCLKLLD 331 (937)
Q Consensus 254 ~~l~~Lr~L~L~~~~~~~lp~~i~-~l~~Lr~L~L~~~~~~~l~~i~~L~~L~~L~L~~~~l~~lp~~i-~~L~~L~~L~ 331 (937)
.+..++|.|+|.++.|+.+. .++ .+.+|+.|++++|.++.++.+..+++|++|++++|.|+++++.+ ..+++|++|+
T Consensus 16 ~n~~~~~~L~L~~n~I~~Ie-~L~~~l~~L~~L~Ls~N~I~~l~~l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~~L~ 94 (175)
T PF14580_consen 16 NNPVKLRELNLRGNQISTIE-NLGATLDKLEVLDLSNNQITKLEGLPGLPRLKTLDLSNNRISSISEGLDKNLPNLQELY 94 (175)
T ss_dssp ---------------------S--TT-TT--EEE-TTS--S--TT----TT--EEE--SS---S-CHHHHHH-TT--EEE
T ss_pred cccccccccccccccccccc-chhhhhcCCCEEECCCCCCccccCccChhhhhhcccCCCCCCccccchHHhCCcCCEEE
Confidence 45556788888888877664 455 57788888888888888877888888888888888888776655 3578888888
Q ss_pred ecCCCCCcccCh-hhhcCCCCCcEEEcCCCcccceecCCCCCChhhhcCCCCCCeEEee
Q 002313 332 LSNCSKLKEIRP-NVISNLTRLEELYMGNSFTQWKVEGQSNASLGELKQLSRLTTLEVH 389 (937)
Q Consensus 332 l~~~~~l~~lp~-~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~ 389 (937)
+++| ++..+.. ..++.+++|+.|++.+|.+. .......--+..+++|+.||-.
T Consensus 95 L~~N-~I~~l~~l~~L~~l~~L~~L~L~~NPv~----~~~~YR~~vi~~lP~Lk~LD~~ 148 (175)
T PF14580_consen 95 LSNN-KISDLNELEPLSSLPKLRVLSLEGNPVC----EKKNYRLFVIYKLPSLKVLDGQ 148 (175)
T ss_dssp -TTS----SCCCCGGGGG-TT--EEE-TT-GGG----GSTTHHHHHHHH-TT-SEETTE
T ss_pred CcCC-cCCChHHhHHHHcCCCcceeeccCCccc----chhhHHHHHHHHcChhheeCCE
Confidence 8774 3544322 22667788888888877664 2222223344455666666544
No 27
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.94 E-value=5.9e-11 Score=125.39 Aligned_cols=176 Identities=23% Similarity=0.377 Sum_probs=147.8
Q ss_pred CCcEEEccCCCCccCCccc-CCCccceeeecCCcccccCChhhhcCCCCccEEEecCCcCcccCccccCCCCCCEEEccC
Q 002313 211 APTAISIPFRGIYELPERL-GFLKLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHSLPSSLGCLINLRTLSLEN 289 (937)
Q Consensus 211 ~l~~l~l~~~~~~~l~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~lp~~i~~l~~Lr~L~L~~ 289 (937)
....++++.|++..+|... .+-.|..+.+..|.+ ..+|..+ ..+..|.+|+|+.|++..+|..++.|+ |++|-+++
T Consensus 76 dt~~aDlsrNR~~elp~~~~~f~~Le~liLy~n~~-r~ip~~i-~~L~~lt~l~ls~NqlS~lp~~lC~lp-Lkvli~sN 152 (722)
T KOG0532|consen 76 DTVFADLSRNRFSELPEEACAFVSLESLILYHNCI-RTIPEAI-CNLEALTFLDLSSNQLSHLPDGLCDLP-LKVLIVSN 152 (722)
T ss_pred chhhhhccccccccCchHHHHHHHHHHHHHHhccc-eecchhh-hhhhHHHHhhhccchhhcCChhhhcCc-ceeEEEec
Confidence 4456788888888998877 466777777766543 4567665 789999999999999999999998875 99999999
Q ss_pred CcccCc-ccccCCCCCcEEecccCcCcccCcccccCccCCEEEecCCCCCcccChhhhcCCCCCcEEEcCCCcccceecC
Q 002313 290 CLVVDV-AIIGDLKKLEILSLKHSSIEQLPREIGQLTCLKLLDLSNCSKLKEIRPNVISNLTRLEELYMGNSFTQWKVEG 368 (937)
Q Consensus 290 ~~~~~l-~~i~~L~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~l~~L~~L~~L~l~~~~~~~~~~~ 368 (937)
|+++.+ +.++.+.+|..||.+.|.+..+|..++.+.+|+.|++.. +.+..+|.. +..| .|..|+++.|.+.
T Consensus 153 Nkl~~lp~~ig~~~tl~~ld~s~nei~slpsql~~l~slr~l~vrR-n~l~~lp~E-l~~L-pLi~lDfScNkis----- 224 (722)
T KOG0532|consen 153 NKLTSLPEEIGLLPTLAHLDVSKNEIQSLPSQLGYLTSLRDLNVRR-NHLEDLPEE-LCSL-PLIRLDFSCNKIS----- 224 (722)
T ss_pred CccccCCcccccchhHHHhhhhhhhhhhchHHhhhHHHHHHHHHhh-hhhhhCCHH-HhCC-ceeeeecccCcee-----
Confidence 999887 889999999999999999999999999999999999998 458889987 6655 4888999988765
Q ss_pred CCCCChhhhcCCCCCCeEEeecCCCCCCCccc
Q 002313 369 QSNASLGELKQLSRLTTLEVHIPDAQVMPQDL 400 (937)
Q Consensus 369 ~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~ 400 (937)
..+..+.+|++|+.|.|.+|.+..-|..+
T Consensus 225 ---~iPv~fr~m~~Lq~l~LenNPLqSPPAqI 253 (722)
T KOG0532|consen 225 ---YLPVDFRKMRHLQVLQLENNPLQSPPAQI 253 (722)
T ss_pred ---ecchhhhhhhhheeeeeccCCCCCChHHH
Confidence 66788899999999999999888877766
No 28
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.89 E-value=2.2e-09 Score=101.10 Aligned_cols=123 Identities=29% Similarity=0.411 Sum_probs=45.2
Q ss_pred ecCCcCcccCccccCCCCCCEEEccCCcccCccccc-CCCCCcEEecccCcCcccCcccccCccCCEEEecCCCCCcccC
Q 002313 264 LTGFRFHSLPSSLGCLINLRTLSLENCLVVDVAIIG-DLKKLEILSLKHSSIEQLPREIGQLTCLKLLDLSNCSKLKEIR 342 (937)
Q Consensus 264 L~~~~~~~lp~~i~~l~~Lr~L~L~~~~~~~l~~i~-~L~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~lp 342 (937)
|..+.|...|. +.+..++|.|+|++|.+..++.++ .+.+|+.|++++|.|+.++ ++..+++|++|++++ +.++.++
T Consensus 4 lt~~~i~~~~~-~~n~~~~~~L~L~~n~I~~Ie~L~~~l~~L~~L~Ls~N~I~~l~-~l~~L~~L~~L~L~~-N~I~~i~ 80 (175)
T PF14580_consen 4 LTANMIEQIAQ-YNNPVKLRELNLRGNQISTIENLGATLDKLEVLDLSNNQITKLE-GLPGLPRLKTLDLSN-NRISSIS 80 (175)
T ss_dssp ---------------------------------S--TT-TT--EEE-TTS--S--T-T----TT--EEE--S-S---S-C
T ss_pred ccccccccccc-cccccccccccccccccccccchhhhhcCCCEEECCCCCCcccc-CccChhhhhhcccCC-CCCCccc
Confidence 44455555554 456678999999999999998888 6899999999999999986 688999999999999 5588887
Q ss_pred hhhhcCCCCCcEEEcCCCcccceecCCCCCChhhhcCCCCCCeEEeecCCCCC
Q 002313 343 PNVISNLTRLEELYMGNSFTQWKVEGQSNASLGELKQLSRLTTLEVHIPDAQV 395 (937)
Q Consensus 343 ~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~ 395 (937)
......+++|++|++++|.+. . -..+..++.+++|+.|++.+|.+..
T Consensus 81 ~~l~~~lp~L~~L~L~~N~I~----~--l~~l~~L~~l~~L~~L~L~~NPv~~ 127 (175)
T PF14580_consen 81 EGLDKNLPNLQELYLSNNKIS----D--LNELEPLSSLPKLRVLSLEGNPVCE 127 (175)
T ss_dssp HHHHHH-TT--EEE-TTS-------S--CCCCGGGGG-TT--EEE-TT-GGGG
T ss_pred cchHHhCCcCCEEECcCCcCC----C--hHHhHHHHcCCCcceeeccCCcccc
Confidence 653357999999999999775 1 2346788889999999999886643
No 29
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=98.83 E-value=6.4e-10 Score=120.39 Aligned_cols=137 Identities=21% Similarity=0.209 Sum_probs=82.0
Q ss_pred hhhcCCCCccEEEecCCcCc-----ccCccccCCCCCCEEEccCCcccC-------c-ccccCCCCCcEEecccCcCc-c
Q 002313 251 PFFEGMTELRVLDLTGFRFH-----SLPSSLGCLINLRTLSLENCLVVD-------V-AIIGDLKKLEILSLKHSSIE-Q 316 (937)
Q Consensus 251 ~~~~~l~~Lr~L~L~~~~~~-----~lp~~i~~l~~Lr~L~L~~~~~~~-------l-~~i~~L~~L~~L~L~~~~l~-~ 316 (937)
.+|..+.+|++|+++++.+. .++..+...++|++|+++++.+.. + ..+.++.+|++|++++|.+. .
T Consensus 17 ~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~ 96 (319)
T cd00116 17 ELLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPD 96 (319)
T ss_pred HHHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChh
Confidence 34566777888888888763 355566677778888887776552 1 34566777777777777665 3
Q ss_pred cCcccccCcc---CCEEEecCCCCCcc-----cChhhhcCC-CCCcEEEcCCCcccceecCCCCCChhhhcCCCCCCeEE
Q 002313 317 LPREIGQLTC---LKLLDLSNCSKLKE-----IRPNVISNL-TRLEELYMGNSFTQWKVEGQSNASLGELKQLSRLTTLE 387 (937)
Q Consensus 317 lp~~i~~L~~---L~~L~l~~~~~l~~-----lp~~~l~~L-~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~ 387 (937)
.+..+..+.+ |++|++++|. +.. +... +..+ ++|++|++++|.+.. .........+..+++|++|+
T Consensus 97 ~~~~~~~l~~~~~L~~L~ls~~~-~~~~~~~~l~~~-l~~~~~~L~~L~L~~n~l~~---~~~~~~~~~~~~~~~L~~L~ 171 (319)
T cd00116 97 GCGVLESLLRSSSLQELKLNNNG-LGDRGLRLLAKG-LKDLPPALEKLVLGRNRLEG---ASCEALAKALRANRDLKELN 171 (319)
T ss_pred HHHHHHHHhccCcccEEEeeCCc-cchHHHHHHHHH-HHhCCCCceEEEcCCCcCCc---hHHHHHHHHHHhCCCcCEEE
Confidence 3444444444 7777777754 331 1111 4455 677777777775541 00112234455566677777
Q ss_pred eecCC
Q 002313 388 VHIPD 392 (937)
Q Consensus 388 l~~~~ 392 (937)
++++.
T Consensus 172 l~~n~ 176 (319)
T cd00116 172 LANNG 176 (319)
T ss_pred CcCCC
Confidence 76654
No 30
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=98.83 E-value=1.8e-09 Score=116.96 Aligned_cols=176 Identities=21% Similarity=0.181 Sum_probs=93.9
Q ss_pred CCcEEEccCCCCc-----cCCccc-CCCccceeeecCCcccc------cCChhhhcCCCCccEEEecCCcCc-ccCcccc
Q 002313 211 APTAISIPFRGIY-----ELPERL-GFLKLKLFLFFTENLSL------QIPDPFFEGMTELRVLDLTGFRFH-SLPSSLG 277 (937)
Q Consensus 211 ~l~~l~l~~~~~~-----~l~~~~-~~~~L~~L~l~~~~~~~------~~~~~~~~~l~~Lr~L~L~~~~~~-~lp~~i~ 277 (937)
.++.+++.++.+. .++... ..+.+++|++.++.... .++ ..+.++.+|+.|++++|.+. ..+..+.
T Consensus 24 ~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~-~~l~~~~~L~~L~l~~~~~~~~~~~~~~ 102 (319)
T cd00116 24 CLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLL-QGLTKGCGLQELDLSDNALGPDGCGVLE 102 (319)
T ss_pred hccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHH-HHHHhcCceeEEEccCCCCChhHHHHHH
Confidence 3666666666552 223222 34456666666554321 111 23456667777777777765 2333343
Q ss_pred CCCC---CCEEEccCCcccC-----c-ccccCC-CCCcEEecccCcCc-----ccCcccccCccCCEEEecCCCCCc---
Q 002313 278 CLIN---LRTLSLENCLVVD-----V-AIIGDL-KKLEILSLKHSSIE-----QLPREIGQLTCLKLLDLSNCSKLK--- 339 (937)
Q Consensus 278 ~l~~---Lr~L~L~~~~~~~-----l-~~i~~L-~~L~~L~L~~~~l~-----~lp~~i~~L~~L~~L~l~~~~~l~--- 339 (937)
.+.+ |++|++++|++.. + ..+..+ ++|+.|++++|.++ .++..+..+.+|++|++++|. +.
T Consensus 103 ~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~-l~~~~ 181 (319)
T cd00116 103 SLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNG-IGDAG 181 (319)
T ss_pred HHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCC-CchHH
Confidence 3333 7777777776552 1 344555 67777777777665 334445566677777777654 33
Q ss_pred --ccChhhhcCCCCCcEEEcCCCcccceecCCC-CCChhhhcCCCCCCeEEeecCCC
Q 002313 340 --EIRPNVISNLTRLEELYMGNSFTQWKVEGQS-NASLGELKQLSRLTTLEVHIPDA 393 (937)
Q Consensus 340 --~lp~~~l~~L~~L~~L~l~~~~~~~~~~~~~-~~~~~~l~~l~~L~~L~l~~~~~ 393 (937)
.++.. +..+++|++|++++|.+. +.. ......+..+++|+.|+++++.+
T Consensus 182 ~~~l~~~-l~~~~~L~~L~L~~n~i~----~~~~~~l~~~~~~~~~L~~L~ls~n~l 233 (319)
T cd00116 182 IRALAEG-LKANCNLEVLDLNNNGLT----DEGASALAETLASLKSLEVLNLGDNNL 233 (319)
T ss_pred HHHHHHH-HHhCCCCCEEeccCCccC----hHHHHHHHHHhcccCCCCEEecCCCcC
Confidence 12222 344457777777766543 100 11223344556666666666543
No 31
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.79 E-value=8.8e-10 Score=107.10 Aligned_cols=134 Identities=21% Similarity=0.221 Sum_probs=113.8
Q ss_pred CCCccEEEecCCcCcccCccccCCCCCCEEEccCCcccCcccccCCCCCcEEecccCcCcccCcccccCccCCEEEecCC
Q 002313 256 MTELRVLDLTGFRFHSLPSSLGCLINLRTLSLENCLVVDVAIIGDLKKLEILSLKHSSIEQLPREIGQLTCLKLLDLSNC 335 (937)
Q Consensus 256 l~~Lr~L~L~~~~~~~lp~~i~~l~~Lr~L~L~~~~~~~l~~i~~L~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~l~~~ 335 (937)
.+.|..+||++|.|+.+-+++.-++.+|+|++++|.+..+.++..|++|++||+++|.+.++..+-.+|.|.++|.+++
T Consensus 283 Wq~LtelDLS~N~I~~iDESvKL~Pkir~L~lS~N~i~~v~nLa~L~~L~~LDLS~N~Ls~~~Gwh~KLGNIKtL~La~- 361 (490)
T KOG1259|consen 283 WQELTELDLSGNLITQIDESVKLAPKLRRLILSQNRIRTVQNLAELPQLQLLDLSGNLLAECVGWHLKLGNIKTLKLAQ- 361 (490)
T ss_pred HhhhhhccccccchhhhhhhhhhccceeEEeccccceeeehhhhhcccceEeecccchhHhhhhhHhhhcCEeeeehhh-
Confidence 4678999999999999988898999999999999999999889999999999999999998887778899999999999
Q ss_pred CCCcccChhhhcCCCCCcEEEcCCCcccceecCCCCCChhhhcCCCCCCeEEeecCCCCCCCc
Q 002313 336 SKLKEIRPNVISNLTRLEELYMGNSFTQWKVEGQSNASLGELKQLSRLTTLEVHIPDAQVMPQ 398 (937)
Q Consensus 336 ~~l~~lp~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~ 398 (937)
+.+..+.. +++|-+|..|++++|.+.. -.....+++++.|+++.+.+|.+..++.
T Consensus 362 N~iE~LSG--L~KLYSLvnLDl~~N~Ie~------ldeV~~IG~LPCLE~l~L~~NPl~~~vd 416 (490)
T KOG1259|consen 362 NKIETLSG--LRKLYSLVNLDLSSNQIEE------LDEVNHIGNLPCLETLRLTGNPLAGSVD 416 (490)
T ss_pred hhHhhhhh--hHhhhhheeccccccchhh------HHHhcccccccHHHHHhhcCCCccccch
Confidence 55777764 8999999999999987641 1234567778888888888887765554
No 32
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.72 E-value=1.4e-09 Score=105.80 Aligned_cols=121 Identities=24% Similarity=0.322 Sum_probs=60.2
Q ss_pred CCcEEEccCCCCccCCcccC-CCccceeeecCCcccccCChhhhcCCCCccEEEecCCcCcccCccccCCCCCCEEEccC
Q 002313 211 APTAISIPFRGIYELPERLG-FLKLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHSLPSSLGCLINLRTLSLEN 289 (937)
Q Consensus 211 ~l~~l~l~~~~~~~l~~~~~-~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~lp~~i~~l~~Lr~L~L~~ 289 (937)
.+..+++++|.|..+....+ .+++|.|++++|.+.. +- + +..+.+|..|||++|.+.++-.+--++-|.+.|.|++
T Consensus 285 ~LtelDLS~N~I~~iDESvKL~Pkir~L~lS~N~i~~-v~-n-La~L~~L~~LDLS~N~Ls~~~Gwh~KLGNIKtL~La~ 361 (490)
T KOG1259|consen 285 ELTELDLSGNLITQIDESVKLAPKLRRLILSQNRIRT-VQ-N-LAELPQLQLLDLSGNLLAECVGWHLKLGNIKTLKLAQ 361 (490)
T ss_pred hhhhccccccchhhhhhhhhhccceeEEeccccceee-eh-h-hhhcccceEeecccchhHhhhhhHhhhcCEeeeehhh
Confidence 34455555555555554442 4555555555554321 11 1 2445555555555555554444444455555555555
Q ss_pred CcccCcccccCCCCCcEEecccCcCcccC--cccccCccCCEEEecC
Q 002313 290 CLVVDVAIIGDLKKLEILSLKHSSIEQLP--REIGQLTCLKLLDLSN 334 (937)
Q Consensus 290 ~~~~~l~~i~~L~~L~~L~L~~~~l~~lp--~~i~~L~~L~~L~l~~ 334 (937)
|.+..++.+++|++|.+||+++|+|..+. .+||+|+.|++|.+.+
T Consensus 362 N~iE~LSGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~ 408 (490)
T KOG1259|consen 362 NKIETLSGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTG 408 (490)
T ss_pred hhHhhhhhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcC
Confidence 55555555555555555555555554442 2455555555555544
No 33
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.69 E-value=8.5e-10 Score=116.79 Aligned_cols=168 Identities=21% Similarity=0.309 Sum_probs=139.5
Q ss_pred CCCccceeeecCCcccccCChhhhcCCCCccEEEecCCcCcccCccccCCCCCCEEEccCCcccCc-ccccCCCCCcEEe
Q 002313 230 GFLKLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHSLPSSLGCLINLRTLSLENCLVVDV-AIIGDLKKLEILS 308 (937)
Q Consensus 230 ~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~lp~~i~~l~~Lr~L~L~~~~~~~l-~~i~~L~~L~~L~ 308 (937)
++.--...+++.|.+. ++|..+ ..+..|..+.|+.|.+..+|..++++..|.+|+++.|++..+ ..+..| -|+.|-
T Consensus 73 ~ltdt~~aDlsrNR~~-elp~~~-~~f~~Le~liLy~n~~r~ip~~i~~L~~lt~l~ls~NqlS~lp~~lC~l-pLkvli 149 (722)
T KOG0532|consen 73 DLTDTVFADLSRNRFS-ELPEEA-CAFVSLESLILYHNCIRTIPEAICNLEALTFLDLSSNQLSHLPDGLCDL-PLKVLI 149 (722)
T ss_pred cccchhhhhccccccc-cCchHH-HHHHHHHHHHHHhccceecchhhhhhhHHHHhhhccchhhcCChhhhcC-cceeEE
Confidence 3444455667777653 677774 778899999999999999999999999999999999999877 555554 489999
Q ss_pred cccCcCcccCcccccCccCCEEEecCCCCCcccChhhhcCCCCCcEEEcCCCcccceecCCCCCChhhhcCCCCCCeEEe
Q 002313 309 LKHSSIEQLPREIGQLTCLKLLDLSNCSKLKEIRPNVISNLTRLEELYMGNSFTQWKVEGQSNASLGELKQLSRLTTLEV 388 (937)
Q Consensus 309 L~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l 388 (937)
+++|+++.+|.+++-+.+|.+||.+.|. +..+|.. ++.+.+|+.|.+..|.+. ..+.++..| .|..|++
T Consensus 150 ~sNNkl~~lp~~ig~~~tl~~ld~s~ne-i~slpsq-l~~l~slr~l~vrRn~l~--------~lp~El~~L-pLi~lDf 218 (722)
T KOG0532|consen 150 VSNNKLTSLPEEIGLLPTLAHLDVSKNE-IQSLPSQ-LGYLTSLRDLNVRRNHLE--------DLPEELCSL-PLIRLDF 218 (722)
T ss_pred EecCccccCCcccccchhHHHhhhhhhh-hhhchHH-hhhHHHHHHHHHhhhhhh--------hCCHHHhCC-ceeeeec
Confidence 9999999999999999999999999854 8889987 899999999999888764 566777755 4889999
Q ss_pred ecCCCCCCCccc-cccccceeEEE
Q 002313 389 HIPDAQVMPQDL-VFVELERFRIC 411 (937)
Q Consensus 389 ~~~~~~~~~~~~-~~~~L~~l~l~ 411 (937)
++|.+..+|..+ .+..|+.+.+.
T Consensus 219 ScNkis~iPv~fr~m~~Lq~l~Le 242 (722)
T KOG0532|consen 219 SCNKISYLPVDFRKMRHLQVLQLE 242 (722)
T ss_pred ccCceeecchhhhhhhhheeeeec
Confidence 999999998876 56667766653
No 34
>PRK15386 type III secretion protein GogB; Provisional
Probab=98.56 E-value=1.1e-07 Score=100.69 Aligned_cols=136 Identities=17% Similarity=0.311 Sum_probs=73.6
Q ss_pred CCCccEEEEeccCCccccchHHHHhhccccceeeeccccchHHHhccCCCCCCCcccccccccceeeeccCccccccccc
Q 002313 675 GKNLTKLTVEKCGRLKFLFSSSMVNGLEQLQQLDISHCKSMNEVINTRVGRDDNMIEMVFPKLVSLQLSHLPKLTRFGIG 754 (937)
Q Consensus 675 l~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~~~~~L~~L~i~~c~~l~~~~~~ 754 (937)
+..+++|+|++| .++.+| .-.++|+.|.|++|..++.++.. .+++|++|.+.+|+++..+|
T Consensus 51 ~~~l~~L~Is~c-~L~sLP-----~LP~sLtsL~Lsnc~nLtsLP~~-----------LP~nLe~L~Ls~Cs~L~sLP-- 111 (426)
T PRK15386 51 ARASGRLYIKDC-DIESLP-----VLPNELTEITIENCNNLTTLPGS-----------IPEGLEKLTVCHCPEISGLP-- 111 (426)
T ss_pred hcCCCEEEeCCC-CCcccC-----CCCCCCcEEEccCCCCcccCCch-----------hhhhhhheEccCcccccccc--
Confidence 467777777777 666553 12235777777777777666543 34577777777776665543
Q ss_pred CCCCcccccceeeccCCCceeeccccccccccccccCccCcCccccccccCCCccEEEecCCCCcceec-cCCCCcccCC
Q 002313 755 DSVEFPSLCQLQIACCPNLKIFICSCTEEMSSEKNIHTTQTQPLFDEKVGLPKLEVLRIDGMDNLRKIW-HHQLALDSFT 833 (937)
Q Consensus 755 ~~~~l~~L~~L~i~~C~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~L~~L~l~~c~~l~~l~-~~~~~~~~l~ 833 (937)
.+|+.|++.. .... .+. ...++|+.|.+.+........ ...+| +
T Consensus 112 -----~sLe~L~L~~-n~~~-------------------~L~------~LPssLk~L~I~~~n~~~~~~lp~~LP----s 156 (426)
T PRK15386 112 -----ESVRSLEIKG-SATD-------------------SIK------NVPNGLTSLSINSYNPENQARIDNLIS----P 156 (426)
T ss_pred -----cccceEEeCC-CCCc-------------------ccc------cCcchHhheeccccccccccccccccC----C
Confidence 3455555532 2111 011 123566677664432111100 01122 5
Q ss_pred CCcEEEEEcCCCcccccchhHHHhcCCCcEEeeccc
Q 002313 834 KLKDLDVEYCDQLLSIFPSNMLRRLERLEHLAVSEC 869 (937)
Q Consensus 834 ~L~~L~i~~C~~L~~~~p~~~l~~l~~L~~L~i~~C 869 (937)
+|+.|.|.+|..+. +|.. -+.+|+.|.++.+
T Consensus 157 SLk~L~Is~c~~i~--LP~~---LP~SLk~L~ls~n 187 (426)
T PRK15386 157 SLKTLSLTGCSNII--LPEK---LPESLQSITLHIE 187 (426)
T ss_pred cccEEEecCCCccc--Cccc---ccccCcEEEeccc
Confidence 67777777777554 3432 2457777777653
No 35
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.47 E-value=1.5e-07 Score=104.98 Aligned_cols=142 Identities=32% Similarity=0.404 Sum_probs=64.3
Q ss_pred CccEEEecCCcCcccCccccCCCCCCEEEccCCcccCccc-ccCCCCCcEEecccCcCcccCcccccCccCCEEEecCCC
Q 002313 258 ELRVLDLTGFRFHSLPSSLGCLINLRTLSLENCLVVDVAI-IGDLKKLEILSLKHSSIEQLPREIGQLTCLKLLDLSNCS 336 (937)
Q Consensus 258 ~Lr~L~L~~~~~~~lp~~i~~l~~Lr~L~L~~~~~~~l~~-i~~L~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~l~~~~ 336 (937)
+|+.|++++|.+..+|..++.+++|+.|++++|++..++. .+.+.+|+.|+++++.+..+|..++.+..|++|.++++.
T Consensus 141 nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~~~L~~L~ls~N~i~~l~~~~~~~~~L~~l~~~~N~ 220 (394)
T COG4886 141 NLKELDLSDNKIESLPSPLRNLPNLKNLDLSFNDLSDLPKLLSNLSNLNNLDLSGNKISDLPPEIELLSALEELDLSNNS 220 (394)
T ss_pred hcccccccccchhhhhhhhhccccccccccCCchhhhhhhhhhhhhhhhheeccCCccccCchhhhhhhhhhhhhhcCCc
Confidence 4555555555555554445555555555555555554422 225555555555555555555444444445555555432
Q ss_pred CCcccChhhhcCCCCCcEEEcCCCcccceecCCCCCChhhhcCCCCCCeEEeecCCCCCCCccccccccceeE
Q 002313 337 KLKEIRPNVISNLTRLEELYMGNSFTQWKVEGQSNASLGELKQLSRLTTLEVHIPDAQVMPQDLVFVELERFR 409 (937)
Q Consensus 337 ~l~~lp~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~l~ 409 (937)
....+.. +.++.++..|.+.++... ..+..+..+..++.|+++.+.+..++......+++.+.
T Consensus 221 -~~~~~~~-~~~~~~l~~l~l~~n~~~--------~~~~~~~~l~~l~~L~~s~n~i~~i~~~~~~~~l~~L~ 283 (394)
T COG4886 221 -IIELLSS-LSNLKNLSGLELSNNKLE--------DLPESIGNLSNLETLDLSNNQISSISSLGSLTNLRELD 283 (394)
T ss_pred -ceecchh-hhhcccccccccCCceee--------eccchhccccccceeccccccccccccccccCccCEEe
Confidence 2222222 444444444444433321 11233444444555555555544444422333444433
No 36
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.45 E-value=1.9e-07 Score=104.12 Aligned_cols=177 Identities=29% Similarity=0.401 Sum_probs=146.9
Q ss_pred cCCCcEEEccCCCCccCCcccCCC--ccceeeecCCcccccCChhhhcCCCCccEEEecCCcCcccCccccCCCCCCEEE
Q 002313 209 DEAPTAISIPFRGIYELPERLGFL--KLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHSLPSSLGCLINLRTLS 286 (937)
Q Consensus 209 ~~~l~~l~l~~~~~~~l~~~~~~~--~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~lp~~i~~l~~Lr~L~ 286 (937)
...+..+++..+.+..++...... +|+.|++.+|... .+|.. .+.++.|+.|++++|.+..+|...+.+..|+.|+
T Consensus 115 ~~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~i~-~l~~~-~~~l~~L~~L~l~~N~l~~l~~~~~~~~~L~~L~ 192 (394)
T COG4886 115 LTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIE-SLPSP-LRNLPNLKNLDLSFNDLSDLPKLLSNLSNLNNLD 192 (394)
T ss_pred ccceeEEecCCcccccCccccccchhhcccccccccchh-hhhhh-hhccccccccccCCchhhhhhhhhhhhhhhhhee
Confidence 356899999999999999988654 8999999998754 45433 4889999999999999999998888999999999
Q ss_pred ccCCcccCccc-ccCCCCCcEEecccCcCcccCcccccCccCCEEEecCCCCCcccChhhhcCCCCCcEEEcCCCcccce
Q 002313 287 LENCLVVDVAI-IGDLKKLEILSLKHSSIEQLPREIGQLTCLKLLDLSNCSKLKEIRPNVISNLTRLEELYMGNSFTQWK 365 (937)
Q Consensus 287 L~~~~~~~l~~-i~~L~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~l~~L~~L~~L~l~~~~~~~~ 365 (937)
+++|.+..++. ++.+.+|++|.+++|.+...+..+.++.++..|.+.. +.+..++.. ++.+.+++.|++++|.+.
T Consensus 193 ls~N~i~~l~~~~~~~~~L~~l~~~~N~~~~~~~~~~~~~~l~~l~l~~-n~~~~~~~~-~~~l~~l~~L~~s~n~i~-- 268 (394)
T COG4886 193 LSGNKISDLPPEIELLSALEELDLSNNSIIELLSSLSNLKNLSGLELSN-NKLEDLPES-IGNLSNLETLDLSNNQIS-- 268 (394)
T ss_pred ccCCccccCchhhhhhhhhhhhhhcCCcceecchhhhhcccccccccCC-ceeeeccch-hccccccceecccccccc--
Confidence 99999999854 4677889999999998888888899999999999776 446665554 899999999999998764
Q ss_pred ecCCCCCChhhhcCCCCCCeEEeecCCCCCCCc
Q 002313 366 VEGQSNASLGELKQLSRLTTLEVHIPDAQVMPQ 398 (937)
Q Consensus 366 ~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~ 398 (937)
.+..+..+.+++.|+++++.....+.
T Consensus 269 -------~i~~~~~~~~l~~L~~s~n~~~~~~~ 294 (394)
T COG4886 269 -------SISSLGSLTNLRELDLSGNSLSNALP 294 (394)
T ss_pred -------ccccccccCccCEEeccCccccccch
Confidence 22238888999999999887655443
No 37
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.40 E-value=6.7e-08 Score=99.66 Aligned_cols=202 Identities=20% Similarity=0.180 Sum_probs=133.3
Q ss_pred hccCCCcEEEccCCCCccCCc--cc-CCCccceeeecCCccccc-CChhhhcCCCCccEEEecCCcCcccCcc--ccCCC
Q 002313 207 KIDEAPTAISIPFRGIYELPE--RL-GFLKLKLFLFFTENLSLQ-IPDPFFEGMTELRVLDLTGFRFHSLPSS--LGCLI 280 (937)
Q Consensus 207 ~~~~~l~~l~l~~~~~~~l~~--~~-~~~~L~~L~l~~~~~~~~-~~~~~~~~l~~Lr~L~L~~~~~~~lp~~--i~~l~ 280 (937)
...+++|.+++.++.+...+. .. .++++|.|+++.|-+..- .--.+...+++|+.|+++.|.+...-++ -..+.
T Consensus 118 sn~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~ 197 (505)
T KOG3207|consen 118 SNLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLS 197 (505)
T ss_pred hhHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhh
Confidence 346789999999988887764 23 689999999988753321 1124457899999999999987643222 23688
Q ss_pred CCCEEEccCCccc--Cc-ccccCCCCCcEEecccCc-CcccCcccccCccCCEEEecCCCCCcccC-hhhhcCCCCCcEE
Q 002313 281 NLRTLSLENCLVV--DV-AIIGDLKKLEILSLKHSS-IEQLPREIGQLTCLKLLDLSNCSKLKEIR-PNVISNLTRLEEL 355 (937)
Q Consensus 281 ~Lr~L~L~~~~~~--~l-~~i~~L~~L~~L~L~~~~-l~~lp~~i~~L~~L~~L~l~~~~~l~~lp-~~~l~~L~~L~~L 355 (937)
+|+.|.+++|.++ ++ ...-.+++|..|+|.+|. +..--....-+..|++|||++++ +..++ .-.++.++.|+.|
T Consensus 198 ~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~-li~~~~~~~~~~l~~L~~L 276 (505)
T KOG3207|consen 198 HLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNN-LIDFDQGYKVGTLPGLNQL 276 (505)
T ss_pred hhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCc-ccccccccccccccchhhh
Confidence 9999999999876 23 455678899999999884 33222334566789999999866 44444 1226888999999
Q ss_pred EcCCCcccceecCCCCCChhhhcCCCCCCeEEeecCCCCCCCcc--c-cccccceeEE
Q 002313 356 YMGNSFTQWKVEGQSNASLGELKQLSRLTTLEVHIPDAQVMPQD--L-VFVELERFRI 410 (937)
Q Consensus 356 ~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~--~-~~~~L~~l~l 410 (937)
+++.+.+. .................+|+.|++..|.+...+.- + ...+++.|++
T Consensus 277 nls~tgi~-si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~ 333 (505)
T KOG3207|consen 277 NLSSTGIA-SIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRI 333 (505)
T ss_pred hccccCcc-hhcCCCccchhhhcccccceeeecccCccccccccchhhccchhhhhhc
Confidence 88887654 11111111223345566788888888877554432 1 3445555543
No 38
>PRK15386 type III secretion protein GogB; Provisional
Probab=98.34 E-value=1e-06 Score=93.41 Aligned_cols=160 Identities=17% Similarity=0.269 Sum_probs=102.2
Q ss_pred cCCCcceeeccCcccceeccCCcccccccCCCccEEEEeccCCccccchHHHHhhccccceeeeccccchHHHhccCCCC
Q 002313 646 VFPSLKKLKLSSINVEKIWLNSFSAIESWGKNLTKLTVEKCGRLKFLFSSSMVNGLEQLQQLDISHCKSMNEVINTRVGR 725 (937)
Q Consensus 646 ~~~~L~~L~l~~c~l~~~~~~~~~~~~~~l~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~ 725 (937)
.+++++.|+|++|.|+++|. ..++|++|.|.+|.+++.++. .+ .++|+.|+|++|..+..+
T Consensus 50 ~~~~l~~L~Is~c~L~sLP~--------LP~sLtsL~Lsnc~nLtsLP~--~L--P~nLe~L~Ls~Cs~L~sL------- 110 (426)
T PRK15386 50 EARASGRLYIKDCDIESLPV--------LPNELTEITIENCNNLTTLPG--SI--PEGLEKLTVCHCPEISGL------- 110 (426)
T ss_pred HhcCCCEEEeCCCCCcccCC--------CCCCCcEEEccCCCCcccCCc--hh--hhhhhheEccCccccccc-------
Confidence 46889999999999988871 235799999999999987653 12 368999999999877533
Q ss_pred CCCcccccccccceeeecc--CcccccccccCCCCcccccceeeccCCCceeeccccccccccccccCccCcCccccccc
Q 002313 726 DDNMIEMVFPKLVSLQLSH--LPKLTRFGIGDSVEFPSLCQLQIACCPNLKIFICSCTEEMSSEKNIHTTQTQPLFDEKV 803 (937)
Q Consensus 726 ~~~~~~~~~~~L~~L~i~~--c~~l~~~~~~~~~~l~~L~~L~i~~C~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 803 (937)
+++|+.|++.. |..+..+ .++|+.|.+.++..... ...+. .
T Consensus 111 --------P~sLe~L~L~~n~~~~L~~L-------PssLk~L~I~~~n~~~~-----------------~~lp~-----~ 153 (426)
T PRK15386 111 --------PESVRSLEIKGSATDSIKNV-------PNGLTSLSINSYNPENQ-----------------ARIDN-----L 153 (426)
T ss_pred --------ccccceEEeCCCCCcccccC-------cchHhheeccccccccc-----------------ccccc-----c
Confidence 35788888753 2223333 34677887754322110 00000 1
Q ss_pred cCCCccEEEecCCCCcceeccCCCCcccCCCCcEEEEEcCC--CcccccchhHHHhcCCCcEEeecccccc
Q 002313 804 GLPKLEVLRIDGMDNLRKIWHHQLALDSFTKLKDLDVEYCD--QLLSIFPSNMLRRLERLEHLAVSECGSI 872 (937)
Q Consensus 804 ~l~~L~~L~l~~c~~l~~l~~~~~~~~~l~~L~~L~i~~C~--~L~~~~p~~~l~~l~~L~~L~i~~C~~l 872 (937)
..++|++|.+++|..+. +| ..++ .+|+.|.+..+. .+. ++...+ .+++ .|.+.+|-.+
T Consensus 154 LPsSLk~L~Is~c~~i~-LP-~~LP----~SLk~L~ls~n~~~sLe--I~~~sL--P~nl-~L~f~n~lkL 213 (426)
T PRK15386 154 ISPSLKTLSLTGCSNII-LP-EKLP----ESLQSITLHIEQKTTWN--ISFEGF--PDGL-DIDLQNSVLL 213 (426)
T ss_pred cCCcccEEEecCCCccc-Cc-cccc----ccCcEEEeccccccccc--Cccccc--cccc-Eechhhhccc
Confidence 24789999999997553 33 2244 789999997653 222 222112 3556 7888887544
No 39
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.32 E-value=7.2e-07 Score=68.76 Aligned_cols=58 Identities=31% Similarity=0.454 Sum_probs=32.7
Q ss_pred ccceeeecCCcccccCChhhhcCCCCccEEEecCCcCccc-CccccCCCCCCEEEccCCc
Q 002313 233 KLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHSL-PSSLGCLINLRTLSLENCL 291 (937)
Q Consensus 233 ~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~l-p~~i~~l~~Lr~L~L~~~~ 291 (937)
+|++|++.+|.+ ..+|..+|..+++|++|++++|.++.+ |..|..+++|++|++++|+
T Consensus 2 ~L~~L~l~~n~l-~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 2 NLESLDLSNNKL-TEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TESEEEETSSTE-SEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred cCcEEECCCCCC-CccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence 455555555532 345555556666666666666666555 3445566666666666554
No 40
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.27 E-value=9.4e-07 Score=68.09 Aligned_cols=57 Identities=30% Similarity=0.477 Sum_probs=39.5
Q ss_pred CCccEEEecCCcCcccC-ccccCCCCCCEEEccCCcccCc--ccccCCCCCcEEecccCc
Q 002313 257 TELRVLDLTGFRFHSLP-SSLGCLINLRTLSLENCLVVDV--AIIGDLKKLEILSLKHSS 313 (937)
Q Consensus 257 ~~Lr~L~L~~~~~~~lp-~~i~~l~~Lr~L~L~~~~~~~l--~~i~~L~~L~~L~L~~~~ 313 (937)
++|++|++++|.+..+| ..|..+++|++|++++|.++.+ ..|.++++|++|++++|.
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence 35777788887777775 4567777777777777776655 456666667776666664
No 41
>PLN03150 hypothetical protein; Provisional
Probab=98.25 E-value=2.2e-06 Score=99.95 Aligned_cols=103 Identities=21% Similarity=0.395 Sum_probs=80.1
Q ss_pred CccEEEecCCcCc-ccCccccCCCCCCEEEccCCccc-Cc-ccccCCCCCcEEecccCcCc-ccCcccccCccCCEEEec
Q 002313 258 ELRVLDLTGFRFH-SLPSSLGCLINLRTLSLENCLVV-DV-AIIGDLKKLEILSLKHSSIE-QLPREIGQLTCLKLLDLS 333 (937)
Q Consensus 258 ~Lr~L~L~~~~~~-~lp~~i~~l~~Lr~L~L~~~~~~-~l-~~i~~L~~L~~L~L~~~~l~-~lp~~i~~L~~L~~L~l~ 333 (937)
.++.|+|+++.+. .+|..++++++|++|+|++|.+. .+ ..++.+++|++|++++|.+. .+|..++++++|++|+++
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls 498 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN 498 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence 4778888888876 56888888888888888888876 33 57888888888888888876 678888888889999888
Q ss_pred CCCCCcccChhhhcC-CCCCcEEEcCCCc
Q 002313 334 NCSKLKEIRPNVISN-LTRLEELYMGNSF 361 (937)
Q Consensus 334 ~~~~l~~lp~~~l~~-L~~L~~L~l~~~~ 361 (937)
+|.....+|.. ++. ..++..+++.+|.
T Consensus 499 ~N~l~g~iP~~-l~~~~~~~~~l~~~~N~ 526 (623)
T PLN03150 499 GNSLSGRVPAA-LGGRLLHRASFNFTDNA 526 (623)
T ss_pred CCcccccCChH-HhhccccCceEEecCCc
Confidence 87655577766 554 3566778777764
No 42
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.16 E-value=4.6e-07 Score=93.63 Aligned_cols=180 Identities=19% Similarity=0.180 Sum_probs=119.5
Q ss_pred hccCCCcEEEccCCCCccCC---ccc-CCCccceeeecCCcccccCChhhhcCCCCccEEEecCCcCc--ccCccccCCC
Q 002313 207 KIDEAPTAISIPFRGIYELP---ERL-GFLKLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFH--SLPSSLGCLI 280 (937)
Q Consensus 207 ~~~~~l~~l~l~~~~~~~l~---~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~--~lp~~i~~l~ 280 (937)
.....+|.|+++.|-+.... +.. .+++|+.|+++.|.+..-.....-..+.+|+.|.|++|++. .+-.....++
T Consensus 143 k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~lK~L~l~~CGls~k~V~~~~~~fP 222 (505)
T KOG3207|consen 143 KILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSHLKQLVLNSCGLSWKDVQWILLTFP 222 (505)
T ss_pred hhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhhhheEEeccCCCCHHHHHHHHHhCC
Confidence 45678899999988655432 222 58899999998887543222222235788999999999886 2333345678
Q ss_pred CCCEEEccCCcccCc--ccccCCCCCcEEecccCcCcccC--cccccCccCCEEEecCCCCCccc--Chh----hhcCCC
Q 002313 281 NLRTLSLENCLVVDV--AIIGDLKKLEILSLKHSSIEQLP--REIGQLTCLKLLDLSNCSKLKEI--RPN----VISNLT 350 (937)
Q Consensus 281 ~Lr~L~L~~~~~~~l--~~i~~L~~L~~L~L~~~~l~~lp--~~i~~L~~L~~L~l~~~~~l~~l--p~~----~l~~L~ 350 (937)
+|..|.|.+|..... .+..-+..|+.|||++|.+..++ .-++.++.|+.|+++.|. +..+ |+. .....+
T Consensus 223 sl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnls~tg-i~si~~~d~~s~~kt~~f~ 301 (505)
T KOG3207|consen 223 SLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLNLSSTG-IASIAEPDVESLDKTHTFP 301 (505)
T ss_pred cHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhhhhccccC-cchhcCCCccchhhhcccc
Confidence 889999988852222 45566788899999999888777 567888888888888754 4333 211 024567
Q ss_pred CCcEEEcCCCcccceecCCCCCChhhhcCCCCCCeEEeecCCC
Q 002313 351 RLEELYMGNSFTQWKVEGQSNASLGELKQLSRLTTLEVHIPDA 393 (937)
Q Consensus 351 ~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~ 393 (937)
+|+.|++..|.+. ....+..+..+.+|+.|.+..+.+
T Consensus 302 kL~~L~i~~N~I~------~w~sl~~l~~l~nlk~l~~~~n~l 338 (505)
T KOG3207|consen 302 KLEYLNISENNIR------DWRSLNHLRTLENLKHLRITLNYL 338 (505)
T ss_pred cceeeecccCccc------cccccchhhccchhhhhhcccccc
Confidence 8888988887652 123445555666666666655544
No 43
>PLN03150 hypothetical protein; Provisional
Probab=98.14 E-value=4.1e-06 Score=97.74 Aligned_cols=104 Identities=24% Similarity=0.287 Sum_probs=80.0
Q ss_pred CCCEEEccCCcccCc--ccccCCCCCcEEecccCcCc-ccCcccccCccCCEEEecCCCCCcccChhhhcCCCCCcEEEc
Q 002313 281 NLRTLSLENCLVVDV--AIIGDLKKLEILSLKHSSIE-QLPREIGQLTCLKLLDLSNCSKLKEIRPNVISNLTRLEELYM 357 (937)
Q Consensus 281 ~Lr~L~L~~~~~~~l--~~i~~L~~L~~L~L~~~~l~-~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~l~~L~~L~~L~l 357 (937)
.++.|+|++|.+... ..++++++|++|+|++|.+. .+|..++.+++|++|++++|.-...+|.. ++++++|++|++
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~-l~~L~~L~~L~L 497 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPES-LGQLTSLRILNL 497 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchH-HhcCCCCCEEEC
Confidence 478899999988643 78899999999999999887 78888999999999999997644566665 899999999999
Q ss_pred CCCcccceecCCCCCChhhhcCC-CCCCeEEeecCC
Q 002313 358 GNSFTQWKVEGQSNASLGELKQL-SRLTTLEVHIPD 392 (937)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~~l~~l-~~L~~L~l~~~~ 392 (937)
++|.+. + ..+..+..+ .++..+++.+|.
T Consensus 498 s~N~l~----g---~iP~~l~~~~~~~~~l~~~~N~ 526 (623)
T PLN03150 498 NGNSLS----G---RVPAALGGRLLHRASFNFTDNA 526 (623)
T ss_pred cCCccc----c---cCChHHhhccccCceEEecCCc
Confidence 988665 3 233334332 356677777664
No 44
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.12 E-value=4.9e-08 Score=95.32 Aligned_cols=65 Identities=29% Similarity=0.409 Sum_probs=37.7
Q ss_pred ccCCCCCcEEecccCcCc-ccCcccccCccCCEEEecCCCCCcccChh-hhcCCCCCcEEEcCCCcc
Q 002313 298 IGDLKKLEILSLKHSSIE-QLPREIGQLTCLKLLDLSNCSKLKEIRPN-VISNLTRLEELYMGNSFT 362 (937)
Q Consensus 298 i~~L~~L~~L~L~~~~l~-~lp~~i~~L~~L~~L~l~~~~~l~~lp~~-~l~~L~~L~~L~l~~~~~ 362 (937)
++.+.+|+.|.+.|..+. .+-..+.+-.+|+.|+++.|+.++..... .+.+++.|++|++++|+.
T Consensus 206 Ls~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LNlsWc~l 272 (419)
T KOG2120|consen 206 LSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDELNLSWCFL 272 (419)
T ss_pred HHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhcCchHhhc
Confidence 344555555555555444 23345666677777777777666554322 245667777777776654
No 45
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.05 E-value=4.6e-06 Score=58.48 Aligned_cols=41 Identities=37% Similarity=0.503 Sum_probs=27.7
Q ss_pred CCccEEEecCCcCcccCccccCCCCCCEEEccCCcccCccc
Q 002313 257 TELRVLDLTGFRFHSLPSSLGCLINLRTLSLENCLVVDVAI 297 (937)
Q Consensus 257 ~~Lr~L~L~~~~~~~lp~~i~~l~~Lr~L~L~~~~~~~l~~ 297 (937)
++|++|++++|+++.+|..++++++|++|++++|++++++.
T Consensus 1 ~~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i~~i~~ 41 (44)
T PF12799_consen 1 KNLEELDLSNNQITDLPPELSNLPNLETLNLSNNPISDISP 41 (44)
T ss_dssp TT-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCCSBEGG
T ss_pred CcceEEEccCCCCcccCchHhCCCCCCEEEecCCCCCCCcC
Confidence 35777777777777777667777777777777777665543
No 46
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.03 E-value=5.4e-08 Score=106.17 Aligned_cols=175 Identities=20% Similarity=0.184 Sum_probs=125.4
Q ss_pred cCCCcEEEccCCCCccCCcccCC-CccceeeecCCc---------ccccCChhhhcCCCCccEEEecCCcCcccCccccC
Q 002313 209 DEAPTAISIPFRGIYELPERLGF-LKLKLFLFFTEN---------LSLQIPDPFFEGMTELRVLDLTGFRFHSLPSSLGC 278 (937)
Q Consensus 209 ~~~l~~l~l~~~~~~~l~~~~~~-~~L~~L~l~~~~---------~~~~~~~~~~~~l~~Lr~L~L~~~~~~~lp~~i~~ 278 (937)
.+.+|+|-+.+.++..+.-...+ ..|++|...+.- ..+++..+. .-..|.+.+.++|.+..+-.++.-
T Consensus 108 F~sLr~LElrg~~L~~~~GL~~lr~qLe~LIC~~Sl~Al~~v~ascggd~~ns~--~Wn~L~~a~fsyN~L~~mD~SLql 185 (1096)
T KOG1859|consen 108 FRSLRVLELRGCDLSTAKGLQELRHQLEKLICHNSLDALRHVFASCGGDISNSP--VWNKLATASFSYNRLVLMDESLQL 185 (1096)
T ss_pred ccceeeEEecCcchhhhhhhHHHHHhhhhhhhhccHHHHHHHHHHhccccccch--hhhhHhhhhcchhhHHhHHHHHHH
Confidence 45788888888777653222221 234444432211 112222211 234688999999999888888888
Q ss_pred CCCCCEEEccCCcccCcccccCCCCCcEEecccCcCcccCc-ccccCccCCEEEecCCCCCcccChhhhcCCCCCcEEEc
Q 002313 279 LINLRTLSLENCLVVDVAIIGDLKKLEILSLKHSSIEQLPR-EIGQLTCLKLLDLSNCSKLKEIRPNVISNLTRLEELYM 357 (937)
Q Consensus 279 l~~Lr~L~L~~~~~~~l~~i~~L~~L~~L~L~~~~l~~lp~-~i~~L~~L~~L~l~~~~~l~~lp~~~l~~L~~L~~L~l 357 (937)
+++|+.|+|++|++.+...+..+.+|++|||+.|.+..+|. +.... +|+.|.+++ +.++.+-. +.+|.+|+.|++
T Consensus 186 l~ale~LnLshNk~~~v~~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc-~L~~L~lrn-N~l~tL~g--ie~LksL~~LDl 261 (1096)
T KOG1859|consen 186 LPALESLNLSHNKFTKVDNLRRLPKLKHLDLSYNCLRHVPQLSMVGC-KLQLLNLRN-NALTTLRG--IENLKSLYGLDL 261 (1096)
T ss_pred HHHhhhhccchhhhhhhHHHHhcccccccccccchhccccccchhhh-hheeeeecc-cHHHhhhh--HHhhhhhhccch
Confidence 99999999999999999999999999999999999999985 23333 399999998 45887754 899999999999
Q ss_pred CCCcccceecCCCCCChhhhcCCCCCCeEEeecCCCCC
Q 002313 358 GNSFTQWKVEGQSNASLGELKQLSRLTTLEVHIPDAQV 395 (937)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~ 395 (937)
++|.+. + ...+.-|..|..|+.|.+.+|.+..
T Consensus 262 syNll~----~--hseL~pLwsLs~L~~L~LeGNPl~c 293 (1096)
T KOG1859|consen 262 SYNLLS----E--HSELEPLWSLSSLIVLWLEGNPLCC 293 (1096)
T ss_pred hHhhhh----c--chhhhHHHHHHHHHHHhhcCCcccc
Confidence 998764 1 2344555566678888998886543
No 47
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=97.98 E-value=3e-07 Score=89.91 Aligned_cols=118 Identities=21% Similarity=0.203 Sum_probs=67.3
Q ss_pred CCCcceeeccCc-ccceeccCCcccccccCCCccEEEEeccCCccccchHHHHhhccccceeeeccccchHHHhccCCCC
Q 002313 647 FPSLKKLKLSSI-NVEKIWLNSFSAIESWGKNLTKLTVEKCGRLKFLFSSSMVNGLEQLQQLDISHCKSMNEVINTRVGR 725 (937)
Q Consensus 647 ~~~L~~L~l~~c-~l~~~~~~~~~~~~~~l~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~ 725 (937)
-.+|+.|+|+.| ++++.....+ ..++..|..|+|+.|.-.+.........--+.|..|+|++|..--.....
T Consensus 233 N~~L~~lnlsm~sG~t~n~~~ll---~~scs~L~~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~---- 305 (419)
T KOG2120|consen 233 NSNLVRLNLSMCSGFTENALQLL---LSSCSRLDELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHL---- 305 (419)
T ss_pred cccceeeccccccccchhHHHHH---HHhhhhHhhcCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHH----
Confidence 346677777777 5655432222 34667777777777765443322112223356777777776543221110
Q ss_pred CCCcccccccccceeeeccCcccccccccCCCCcccccceeeccCCCc
Q 002313 726 DDNMIEMVFPKLVSLQLSHLPKLTRFGIGDSVEFPSLCQLQIACCPNL 773 (937)
Q Consensus 726 ~~~~~~~~~~~L~~L~i~~c~~l~~~~~~~~~~l~~L~~L~i~~C~~l 773 (937)
+.....+|+|.+|++++|..++.-....+..++-|++|.++.|..+
T Consensus 306 --~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSlsRCY~i 351 (419)
T KOG2120|consen 306 --STLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLSRCYDI 351 (419)
T ss_pred --HHHHHhCCceeeeccccccccCchHHHHHHhcchheeeehhhhcCC
Confidence 0111246777888888777777644455556777777777777666
No 48
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=97.84 E-value=2.1e-06 Score=95.68 Aligned_cols=106 Identities=29% Similarity=0.413 Sum_probs=73.1
Q ss_pred cCCCCccEEEecCCcCcccCccccCCCCCCEEEccCCcccCcccccCCCCCcEEecccCcCcccCcccccCccCCEEEec
Q 002313 254 EGMTELRVLDLTGFRFHSLPSSLGCLINLRTLSLENCLVVDVAIIGDLKKLEILSLKHSSIEQLPREIGQLTCLKLLDLS 333 (937)
Q Consensus 254 ~~l~~Lr~L~L~~~~~~~lp~~i~~l~~Lr~L~L~~~~~~~l~~i~~L~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~l~ 333 (937)
..++.|.+|++.+|.+..+...+..+.+|++|++++|.++.+..+..+..|+.|++++|.+..++ ++..+++|+.++++
T Consensus 92 ~~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~I~~i~~l~~l~~L~~L~l~~N~i~~~~-~~~~l~~L~~l~l~ 170 (414)
T KOG0531|consen 92 SKLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNKITKLEGLSTLTLLKELNLSGNLISDIS-GLESLKSLKLLDLS 170 (414)
T ss_pred ccccceeeeeccccchhhcccchhhhhcchheeccccccccccchhhccchhhheeccCcchhcc-CCccchhhhcccCC
Confidence 56777777777777777666556777777777777777777777777777777777777777665 35557777777777
Q ss_pred CCCCCcccCh-hhhcCCCCCcEEEcCCCcc
Q 002313 334 NCSKLKEIRP-NVISNLTRLEELYMGNSFT 362 (937)
Q Consensus 334 ~~~~l~~lp~-~~l~~L~~L~~L~l~~~~~ 362 (937)
++. +..+.. . +..+.+++.+.+.++.+
T Consensus 171 ~n~-i~~ie~~~-~~~~~~l~~l~l~~n~i 198 (414)
T KOG0531|consen 171 YNR-IVDIENDE-LSELISLEELDLGGNSI 198 (414)
T ss_pred cch-hhhhhhhh-hhhccchHHHhccCCch
Confidence 743 555544 1 35667777777766644
No 49
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=97.80 E-value=2.9e-06 Score=97.82 Aligned_cols=168 Identities=24% Similarity=0.334 Sum_probs=77.6
Q ss_pred cCCCccEEEEeccCCccccchHHHHhhccccceeeeccccchHHHhccCCCCCCCcccccccccceeeecc---Cccccc
Q 002313 674 WGKNLTKLTVEKCGRLKFLFSSSMVNGLEQLQQLDISHCKSMNEVINTRVGRDDNMIEMVFPKLVSLQLSH---LPKLTR 750 (937)
Q Consensus 674 ~l~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~~~~~L~~L~i~~---c~~l~~ 750 (937)
.+++|++|.+.+|..+++..-....+.+++|++|+|+.|..+..-... .....+++|+.|.+.+ |+.++.
T Consensus 267 ~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~-------~~~~~c~~l~~l~~~~~~~c~~l~~ 339 (482)
T KOG1947|consen 267 RCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLE-------ALLKNCPNLRELKLLSLNGCPSLTD 339 (482)
T ss_pred hCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHH-------HHHHhCcchhhhhhhhcCCCccHHH
Confidence 356666666666665554433445556666666666666665221111 0011244444444333 333444
Q ss_pred ccccCCCCcc--cccceeeccCCCceeeccccccccccccccCccCcCccccccccCCCcc-EEEecCCCCcc-eeccCC
Q 002313 751 FGIGDSVEFP--SLCQLQIACCPNLKIFICSCTEEMSSEKNIHTTQTQPLFDEKVGLPKLE-VLRIDGMDNLR-KIWHHQ 826 (937)
Q Consensus 751 ~~~~~~~~l~--~L~~L~i~~C~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~L~-~L~l~~c~~l~-~l~~~~ 826 (937)
+....+.... .+..+.+..|++++...... . ...... .+.+.+|+.++ .+...
T Consensus 340 ~~l~~~~~~~~d~~~~~~~~~~~~l~~~~l~~-----------------~-----~~~~~~~~~~l~gc~~l~~~l~~~- 396 (482)
T KOG1947|consen 340 LSLSGLLTLTSDDLAELILRSCPKLTDLSLSY-----------------C-----GISDLGLELSLRGCPNLTESLELR- 396 (482)
T ss_pred HHHHHhhccCchhHhHHHHhcCCCcchhhhhh-----------------h-----hccCcchHHHhcCCcccchHHHHH-
Confidence 4433332222 45555555555554221100 0 011111 34455666552 11110
Q ss_pred CCcccCCCCcEEEEEcCCCcccccchhHHHh-cCCCcEEeeccccccee
Q 002313 827 LALDSFTKLKDLDVEYCDQLLSIFPSNMLRR-LERLEHLAVSECGSIEE 874 (937)
Q Consensus 827 ~~~~~l~~L~~L~i~~C~~L~~~~p~~~l~~-l~~L~~L~i~~C~~l~~ 874 (937)
...+.+++.|.+..|...+.-.-. .... +..++.+.+.+|+.+..
T Consensus 397 --~~~~~~l~~L~l~~~~~~t~~~l~-~~~~~~~~~~~l~~~~~~~~~~ 442 (482)
T KOG1947|consen 397 --LCRSDSLRVLNLSDCRLVTDKGLR-CLADSCSNLKDLDLSGCRVITL 442 (482)
T ss_pred --hccCCccceEecccCccccccchH-HHhhhhhccccCCccCcccccc
Confidence 111233777777777766542211 1111 56667777777766654
No 50
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=97.80 E-value=2.4e-06 Score=95.23 Aligned_cols=170 Identities=23% Similarity=0.328 Sum_probs=108.4
Q ss_pred CcEEEccCCCCccCCccc-CCCccceeeecCCcccccCChhhhcCCCCccEEEecCCcCcccCccccCCCCCCEEEccCC
Q 002313 212 PTAISIPFRGIYELPERL-GFLKLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHSLPSSLGCLINLRTLSLENC 290 (937)
Q Consensus 212 l~~l~l~~~~~~~l~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~lp~~i~~l~~Lr~L~L~~~ 290 (937)
+..+++..+.+...-..+ .+.++..|++.+|.+. .+... +..+.+|++|++++|.|..+. .+..+..|+.|++.+|
T Consensus 74 l~~l~l~~n~i~~~~~~l~~~~~l~~l~l~~n~i~-~i~~~-l~~~~~L~~L~ls~N~I~~i~-~l~~l~~L~~L~l~~N 150 (414)
T KOG0531|consen 74 LKELNLRQNLIAKILNHLSKLKSLEALDLYDNKIE-KIENL-LSSLVNLQVLDLSFNKITKLE-GLSTLTLLKELNLSGN 150 (414)
T ss_pred HHhhccchhhhhhhhcccccccceeeeeccccchh-hcccc-hhhhhcchheecccccccccc-chhhccchhhheeccC
Confidence 333445555555533322 5677888888777643 23221 356888888888888888774 3677788888888888
Q ss_pred cccCcccccCCCCCcEEecccCcCcccCcc-cccCccCCEEEecCCCCCcccChhhhcCCCCCcEEEcCCCcccceecCC
Q 002313 291 LVVDVAIIGDLKKLEILSLKHSSIEQLPRE-IGQLTCLKLLDLSNCSKLKEIRPNVISNLTRLEELYMGNSFTQWKVEGQ 369 (937)
Q Consensus 291 ~~~~l~~i~~L~~L~~L~L~~~~l~~lp~~-i~~L~~L~~L~l~~~~~l~~lp~~~l~~L~~L~~L~l~~~~~~~~~~~~ 369 (937)
.+..+..+..+..|+.+++++|.+..+... ...+.+++.+++.++. +..+.. +..+..+..+++..+.+.
T Consensus 151 ~i~~~~~~~~l~~L~~l~l~~n~i~~ie~~~~~~~~~l~~l~l~~n~-i~~i~~--~~~~~~l~~~~l~~n~i~------ 221 (414)
T KOG0531|consen 151 LISDISGLESLKSLKLLDLSYNRIVDIENDELSELISLEELDLGGNS-IREIEG--LDLLKKLVLLSLLDNKIS------ 221 (414)
T ss_pred cchhccCCccchhhhcccCCcchhhhhhhhhhhhccchHHHhccCCc-hhcccc--hHHHHHHHHhhcccccce------
Confidence 888888888888888888888888877654 5778888888888743 444432 333444444455444432
Q ss_pred CCCChhhhcCCC--CCCeEEeecCCCCCC
Q 002313 370 SNASLGELKQLS--RLTTLEVHIPDAQVM 396 (937)
Q Consensus 370 ~~~~~~~l~~l~--~L~~L~l~~~~~~~~ 396 (937)
.+..+..+. +|+.++++.+.+...
T Consensus 222 ---~~~~l~~~~~~~L~~l~l~~n~i~~~ 247 (414)
T KOG0531|consen 222 ---KLEGLNELVMLHLRELYLSGNRISRS 247 (414)
T ss_pred ---eccCcccchhHHHHHHhcccCccccc
Confidence 122222222 266677776665544
No 51
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=97.80 E-value=1.4e-06 Score=100.41 Aligned_cols=123 Identities=24% Similarity=0.264 Sum_probs=79.3
Q ss_pred cccccceeeccCCCCccccccCCCCCcccCCCCCCccccCCCCCccccccccccCCCcceeeccCc--ccceeccCCccc
Q 002313 593 YFRKLHFLKLQHLPQLTSSGFDLETPTNTQGSNPGIIAEGDPKDFTSLFNERVVFPSLKKLKLSSI--NVEKIWLNSFSA 670 (937)
Q Consensus 593 ~~~~L~~L~l~~c~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c--~l~~~~~~~~~~ 670 (937)
.++.|+.+.+.+|..+...... ......+.|++|++++| .....+.....
T Consensus 186 ~~~~L~~l~l~~~~~~~~~~~~---------------------------~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~- 237 (482)
T KOG1947|consen 186 SCPLLKRLSLSGCSKITDDSLD---------------------------ALALKCPNLEELDLSGCCLLITLSPLLLLL- 237 (482)
T ss_pred hCchhhHhhhcccccCChhhHH---------------------------HHHhhCchhheecccCcccccccchhHhhh-
Confidence 4677788888877766652100 01235789999999884 22222211111
Q ss_pred ccccCCCccEEEEeccCCccccchHHHHhhccccceeeeccccchHHHhccCCCCCCCcccccccccceeeeccCccccc
Q 002313 671 IESWGKNLTKLTVEKCGRLKFLFSSSMVNGLEQLQQLDISHCKSMNEVINTRVGRDDNMIEMVFPKLVSLQLSHLPKLTR 750 (937)
Q Consensus 671 ~~~~l~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~~~~~L~~L~i~~c~~l~~ 750 (937)
....+++|+.|++..|..+++..-......+++|+.|.+.+|..++.-... .....+++|++|++..|..++.
T Consensus 238 ~~~~~~~L~~l~l~~~~~isd~~l~~l~~~c~~L~~L~l~~c~~lt~~gl~-------~i~~~~~~L~~L~l~~c~~~~d 310 (482)
T KOG1947|consen 238 LLSICRKLKSLDLSGCGLVTDIGLSALASRCPNLETLSLSNCSNLTDEGLV-------SIAERCPSLRELDLSGCHGLTD 310 (482)
T ss_pred hhhhcCCcCccchhhhhccCchhHHHHHhhCCCcceEccCCCCccchhHHH-------HHHHhcCcccEEeeecCccchH
Confidence 134668999999999988776544444556899999999889875433221 1122578899999999988744
No 52
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.77 E-value=9.9e-06 Score=94.00 Aligned_cols=125 Identities=21% Similarity=0.278 Sum_probs=73.3
Q ss_pred cCCCcEEEccCCCCcc--CCccc--CCCccceeeecCCcccccCChhhhcCCCCccEEEecCCcCcccCccccCCCCCCE
Q 002313 209 DEAPTAISIPFRGIYE--LPERL--GFLKLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHSLPSSLGCLINLRT 284 (937)
Q Consensus 209 ~~~l~~l~l~~~~~~~--l~~~~--~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~lp~~i~~l~~Lr~ 284 (937)
..++++|++++...-. =+..+ .+|.|++|.+.+-.+...--...+..+++|+.||+++++++.+ .++++|+||++
T Consensus 121 r~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl-~GIS~LknLq~ 199 (699)
T KOG3665|consen 121 RQNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL-SGISRLKNLQV 199 (699)
T ss_pred HHhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc-HHHhccccHHH
Confidence 3467777776642210 01111 4677777777665443222234466777788888888777766 56777777777
Q ss_pred EEccCCcccC---cccccCCCCCcEEecccCcCcccCcc-------cccCccCCEEEecC
Q 002313 285 LSLENCLVVD---VAIIGDLKKLEILSLKHSSIEQLPRE-------IGQLTCLKLLDLSN 334 (937)
Q Consensus 285 L~L~~~~~~~---l~~i~~L~~L~~L~L~~~~l~~lp~~-------i~~L~~L~~L~l~~ 334 (937)
|.+++=.+.. +..+.+|++|++||+|......-+.- -..|++||.||.++
T Consensus 200 L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSg 259 (699)
T KOG3665|consen 200 LSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSG 259 (699)
T ss_pred HhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCC
Confidence 7777665543 35666777777777776543322211 12255666666554
No 53
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.75 E-value=1.7e-05 Score=92.12 Aligned_cols=130 Identities=21% Similarity=0.227 Sum_probs=86.7
Q ss_pred CCccceeeecCCc-ccccCChhhhcCCCCccEEEecCCcCc--ccCccccCCCCCCEEEccCCcccCcccccCCCCCcEE
Q 002313 231 FLKLKLFLFFTEN-LSLQIPDPFFEGMTELRVLDLTGFRFH--SLPSSLGCLINLRTLSLENCLVVDVAIIGDLKKLEIL 307 (937)
Q Consensus 231 ~~~L~~L~l~~~~-~~~~~~~~~~~~l~~Lr~L~L~~~~~~--~lp~~i~~l~~Lr~L~L~~~~~~~l~~i~~L~~L~~L 307 (937)
-.+|++|++.+.. +....|..+...++.||.|.+.+-.+. .+-.-..++++|+.||++++.++.+..+++|++|++|
T Consensus 121 r~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl~GIS~LknLq~L 200 (699)
T KOG3665|consen 121 RQNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNLSGISRLKNLQVL 200 (699)
T ss_pred HHhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCcHHHhccccHHHH
Confidence 4678888887754 333455566667888888888886653 2333355678888888888888888888888888888
Q ss_pred ecccCcCcccC--cccccCccCCEEEecCCCCCcccChhh------hcCCCCCcEEEcCCCc
Q 002313 308 SLKHSSIEQLP--REIGQLTCLKLLDLSNCSKLKEIRPNV------ISNLTRLEELYMGNSF 361 (937)
Q Consensus 308 ~L~~~~l~~lp--~~i~~L~~L~~L~l~~~~~l~~lp~~~------l~~L~~L~~L~l~~~~ 361 (937)
.+.+=.+..-+ ..+-+|++|++||+|...... .+.-+ -..|++|+.|+.+++.
T Consensus 201 ~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~-~~~ii~qYlec~~~LpeLrfLDcSgTd 261 (699)
T KOG3665|consen 201 SMRNLEFESYQDLIDLFNLKKLRVLDISRDKNND-DTKIIEQYLECGMVLPELRFLDCSGTD 261 (699)
T ss_pred hccCCCCCchhhHHHHhcccCCCeeecccccccc-chHHHHHHHHhcccCccccEEecCCcc
Confidence 88765555332 356778888888888743222 22100 1236667777666553
No 54
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.68 E-value=4.8e-05 Score=53.33 Aligned_cols=39 Identities=38% Similarity=0.590 Sum_probs=22.2
Q ss_pred CCcEEecccCcCcccCcccccCccCCEEEecCCCCCcccC
Q 002313 303 KLEILSLKHSSIEQLPREIGQLTCLKLLDLSNCSKLKEIR 342 (937)
Q Consensus 303 ~L~~L~L~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~lp 342 (937)
+|++|++++|+++.+|+.+++|++|++|++++| .+..++
T Consensus 2 ~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N-~i~~i~ 40 (44)
T PF12799_consen 2 NLEELDLSNNQITDLPPELSNLPNLETLNLSNN-PISDIS 40 (44)
T ss_dssp T-SEEEETSSS-SSHGGHGTTCTTSSEEEETSS-CCSBEG
T ss_pred cceEEEccCCCCcccCchHhCCCCCCEEEecCC-CCCCCc
Confidence 556666666666666665666666666666664 355443
No 55
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=97.55 E-value=1e-05 Score=81.64 Aligned_cols=12 Identities=25% Similarity=0.540 Sum_probs=7.2
Q ss_pred cccCcEEEeecC
Q 002313 473 FARLRHLHVHNG 484 (937)
Q Consensus 473 ~~~L~~L~l~~~ 484 (937)
+++|+.|.+.+|
T Consensus 240 ~~~L~El~l~dc 251 (382)
T KOG1909|consen 240 WPHLRELNLGDC 251 (382)
T ss_pred cchheeeccccc
Confidence 555666666655
No 56
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.47 E-value=3.3e-06 Score=92.66 Aligned_cols=123 Identities=19% Similarity=0.174 Sum_probs=91.5
Q ss_pred CCcEEEccCCCCccCCccc-CCCccceeeecCCcccccCChhhhcCCCCccEEEecCCcCcccCccccCCCCCCEEEccC
Q 002313 211 APTAISIPFRGIYELPERL-GFLKLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHSLPSSLGCLINLRTLSLEN 289 (937)
Q Consensus 211 ~l~~l~l~~~~~~~l~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~lp~~i~~l~~Lr~L~L~~ 289 (937)
.+...++++|.+..+.... -++.++.|++++|.+..- +.+..+.+|+.|||++|.+..+|.-=..--+|+.|.+++
T Consensus 165 ~L~~a~fsyN~L~~mD~SLqll~ale~LnLshNk~~~v---~~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~L~~L~lrn 241 (1096)
T KOG1859|consen 165 KLATASFSYNRLVLMDESLQLLPALESLNLSHNKFTKV---DNLRRLPKLKHLDLSYNCLRHVPQLSMVGCKLQLLNLRN 241 (1096)
T ss_pred hHhhhhcchhhHHhHHHHHHHHHHhhhhccchhhhhhh---HHHHhcccccccccccchhccccccchhhhhheeeeecc
Confidence 4666777777777666666 467888999988875432 236788899999999999887775221223499999999
Q ss_pred CcccCcccccCCCCCcEEecccCcCcccC--cccccCccCCEEEecCCC
Q 002313 290 CLVVDVAIIGDLKKLEILSLKHSSIEQLP--REIGQLTCLKLLDLSNCS 336 (937)
Q Consensus 290 ~~~~~l~~i~~L~~L~~L~L~~~~l~~lp--~~i~~L~~L~~L~l~~~~ 336 (937)
|.++.+..+.+|++|+.||+++|-+.... .-++.|..|+.|.+.||.
T Consensus 242 N~l~tL~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNP 290 (1096)
T KOG1859|consen 242 NALTTLRGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNP 290 (1096)
T ss_pred cHHHhhhhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCc
Confidence 99988888999999999999988665432 236777888888888854
No 57
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=97.40 E-value=2.8e-05 Score=78.60 Aligned_cols=112 Identities=16% Similarity=0.173 Sum_probs=58.9
Q ss_pred CCCCCCEEEccCCccc-----Cc-ccccCCCCCcEEecccCcCccc--------------CcccccCccCCEEEecCCCC
Q 002313 278 CLINLRTLSLENCLVV-----DV-AIIGDLKKLEILSLKHSSIEQL--------------PREIGQLTCLKLLDLSNCSK 337 (937)
Q Consensus 278 ~l~~Lr~L~L~~~~~~-----~l-~~i~~L~~L~~L~L~~~~l~~l--------------p~~i~~L~~L~~L~l~~~~~ 337 (937)
..++|++|+|+.|-+. .+ .-+...+.|++|.|.+|.+... -.-+++-++||++....| .
T Consensus 90 ~~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rN-r 168 (382)
T KOG1909|consen 90 GCPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRN-R 168 (382)
T ss_pred cCCceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeecc-c
Confidence 4456666666666543 11 3344566666666666655411 112344466777766663 3
Q ss_pred CcccChh----hhcCCCCCcEEEcCCCcccceecCCCCCChhhhcCCCCCCeEEeecCCC
Q 002313 338 LKEIRPN----VISNLTRLEELYMGNSFTQWKVEGQSNASLGELKQLSRLTTLEVHIPDA 393 (937)
Q Consensus 338 l~~lp~~----~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~ 393 (937)
+..-+.. .+...+.|+++.+..|.+.- .|. ......+..+++|+.|++..|..
T Consensus 169 len~ga~~~A~~~~~~~~leevr~~qN~I~~--eG~-~al~eal~~~~~LevLdl~DNtf 225 (382)
T KOG1909|consen 169 LENGGATALAEAFQSHPTLEEVRLSQNGIRP--EGV-TALAEALEHCPHLEVLDLRDNTF 225 (382)
T ss_pred cccccHHHHHHHHHhccccceEEEecccccC--chh-HHHHHHHHhCCcceeeecccchh
Confidence 4443321 13445667777766664430 010 23345666777777777776644
No 58
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.31 E-value=0.00042 Score=64.78 Aligned_cols=119 Identities=20% Similarity=0.256 Sum_probs=70.4
Q ss_pred cEEEccCCCCccCCccc-CCCccceeeecCCcccccCChhhhcCCCCccEEEecCCcCcccCccccC-CCCCCEEEccCC
Q 002313 213 TAISIPFRGIYELPERL-GFLKLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHSLPSSLGC-LINLRTLSLENC 290 (937)
Q Consensus 213 ~~l~l~~~~~~~l~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~lp~~i~~-l~~Lr~L~L~~~ 290 (937)
+.+++.+..+..+...- -..+...+++..|... .++. |..++.|.+|.+.+|+|+.+-..+.. +++|..|.|.+|
T Consensus 22 ~e~~LR~lkip~ienlg~~~d~~d~iDLtdNdl~-~l~~--lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnN 98 (233)
T KOG1644|consen 22 RELDLRGLKIPVIENLGATLDQFDAIDLTDNDLR-KLDN--LPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNN 98 (233)
T ss_pred cccccccccccchhhccccccccceecccccchh-hccc--CCCccccceEEecCCcceeeccchhhhccccceEEecCc
Confidence 44444444443332211 2334555566555432 2322 56777788888888888777444443 556888888877
Q ss_pred cccCc---ccccCCCCCcEEecccCcCcccCc----ccccCccCCEEEecC
Q 002313 291 LVVDV---AIIGDLKKLEILSLKHSSIEQLPR----EIGQLTCLKLLDLSN 334 (937)
Q Consensus 291 ~~~~l---~~i~~L~~L~~L~L~~~~l~~lp~----~i~~L~~L~~L~l~~ 334 (937)
.+..+ ..+..++.|++|.+-+|.++.-.. .+.++++|++||+..
T Consensus 99 si~~l~dl~pLa~~p~L~~Ltll~Npv~~k~~YR~yvl~klp~l~~LDF~k 149 (233)
T KOG1644|consen 99 SIQELGDLDPLASCPKLEYLTLLGNPVEHKKNYRLYVLYKLPSLRTLDFQK 149 (233)
T ss_pred chhhhhhcchhccCCccceeeecCCchhcccCceeEEEEecCcceEeehhh
Confidence 76544 556667777777777776654432 356667777777655
No 59
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.22 E-value=4.3e-05 Score=75.21 Aligned_cols=37 Identities=22% Similarity=0.350 Sum_probs=18.0
Q ss_pred CCCCcEEEcCCCcccceecCCCCCChhhhcCCCCCCeEEeecC
Q 002313 349 LTRLEELYMGNSFTQWKVEGQSNASLGELKQLSRLTTLEVHIP 391 (937)
Q Consensus 349 L~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~ 391 (937)
+.+|+.|.+.+....|... -..+..++.++.|+++.|
T Consensus 120 ~~nl~~lVLNgT~L~w~~~------~s~l~~lP~vtelHmS~N 156 (418)
T KOG2982|consen 120 LKNLRVLVLNGTGLSWTQS------TSSLDDLPKVTELHMSDN 156 (418)
T ss_pred ccceEEEEEcCCCCChhhh------hhhhhcchhhhhhhhccc
Confidence 3455666665555444221 133444555555555544
No 60
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.12 E-value=0.00084 Score=62.84 Aligned_cols=103 Identities=23% Similarity=0.336 Sum_probs=48.0
Q ss_pred CCCEEEccCCcccCcccccCCCCCcEEecccCcCcccCccccc-CccCCEEEecCCCCCc---ccChhhhcCCCCCcEEE
Q 002313 281 NLRTLSLENCLVVDVAIIGDLKKLEILSLKHSSIEQLPREIGQ-LTCLKLLDLSNCSKLK---EIRPNVISNLTRLEELY 356 (937)
Q Consensus 281 ~Lr~L~L~~~~~~~l~~i~~L~~L~~L~L~~~~l~~lp~~i~~-L~~L~~L~l~~~~~l~---~lp~~~l~~L~~L~~L~ 356 (937)
+...+||++|.+..+..+..+..|.+|.+.+|+|+.+.+.+.. +++|..|.+.+|+ +. ++.+ +..++.|+.|.
T Consensus 43 ~~d~iDLtdNdl~~l~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNs-i~~l~dl~p--La~~p~L~~Lt 119 (233)
T KOG1644|consen 43 QFDAIDLTDNDLRKLDNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNS-IQELGDLDP--LASCPKLEYLT 119 (233)
T ss_pred ccceecccccchhhcccCCCccccceEEecCCcceeeccchhhhccccceEEecCcc-hhhhhhcch--hccCCccceee
Confidence 3444555555555555555555555555555555555444432 2345555555532 22 2222 34455555555
Q ss_pred cCCCcccceecCCCCCChhhhcCCCCCCeEEeec
Q 002313 357 MGNSFTQWKVEGQSNASLGELKQLSRLTTLEVHI 390 (937)
Q Consensus 357 l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~ 390 (937)
+-+|.+. .......-.+..+++|+.|+.+.
T Consensus 120 ll~Npv~----~k~~YR~yvl~klp~l~~LDF~k 149 (233)
T KOG1644|consen 120 LLGNPVE----HKKNYRLYVLYKLPSLRTLDFQK 149 (233)
T ss_pred ecCCchh----cccCceeEEEEecCcceEeehhh
Confidence 5444332 11222223344455555555543
No 61
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=96.95 E-value=9e-05 Score=64.42 Aligned_cols=90 Identities=26% Similarity=0.328 Sum_probs=55.6
Q ss_pred cCCCCccEEEecCCcCcccCccccCC-CCCCEEEccCCcccCc-ccccCCCCCcEEecccCcCcccCcccccCccCCEEE
Q 002313 254 EGMTELRVLDLTGFRFHSLPSSLGCL-INLRTLSLENCLVVDV-AIIGDLKKLEILSLKHSSIEQLPREIGQLTCLKLLD 331 (937)
Q Consensus 254 ~~l~~Lr~L~L~~~~~~~lp~~i~~l-~~Lr~L~L~~~~~~~l-~~i~~L~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~ 331 (937)
.+..+|...+|++|.++.+|..|... +.++.|++.+|.+.++ ..+..++.|+.|+++.|.+...|..|..|.+|-.|+
T Consensus 50 ~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr~lNl~~N~l~~~p~vi~~L~~l~~Ld 129 (177)
T KOG4579|consen 50 SKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEISDVPEELAAMPALRSLNLRFNPLNAEPRVIAPLIKLDMLD 129 (177)
T ss_pred hCCceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhhhchHHHhhhHHhhhcccccCccccchHHHHHHHhHHHhc
Confidence 44556666666666666666655433 3566666666666655 446666666666666666666666666677777776
Q ss_pred ecCCCCCcccChh
Q 002313 332 LSNCSKLKEIRPN 344 (937)
Q Consensus 332 l~~~~~l~~lp~~ 344 (937)
..++ ....+|-+
T Consensus 130 s~~n-a~~eid~d 141 (177)
T KOG4579|consen 130 SPEN-ARAEIDVD 141 (177)
T ss_pred CCCC-ccccCcHH
Confidence 6653 34455543
No 62
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=96.80 E-value=0.00019 Score=62.52 Aligned_cols=90 Identities=18% Similarity=0.255 Sum_probs=61.2
Q ss_pred CCCccceeeecCCcccccCChhhhcCCCCccEEEecCCcCcccCccccCCCCCCEEEccCCcccCc-ccccCCCCCcEEe
Q 002313 230 GFLKLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHSLPSSLGCLINLRTLSLENCLVVDV-AIIGDLKKLEILS 308 (937)
Q Consensus 230 ~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~lp~~i~~l~~Lr~L~L~~~~~~~l-~~i~~L~~L~~L~ 308 (937)
+..+|...++++|.+ ..+|+.+-.+++-...|++.+|.+..+|..+..++.||.|+++.|.+... ..|..|.+|-+|+
T Consensus 51 ~~~el~~i~ls~N~f-k~fp~kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr~lNl~~N~l~~~p~vi~~L~~l~~Ld 129 (177)
T KOG4579|consen 51 KGYELTKISLSDNGF-KKFPKKFTIKFPTATTLNLANNEISDVPEELAAMPALRSLNLRFNPLNAEPRVIAPLIKLDMLD 129 (177)
T ss_pred CCceEEEEecccchh-hhCCHHHhhccchhhhhhcchhhhhhchHHHhhhHHhhhcccccCccccchHHHHHHHhHHHhc
Confidence 455666667766654 35666665666677777777777777777777777777777777776644 5566677777777
Q ss_pred cccCcCcccCcc
Q 002313 309 LKHSSIEQLPRE 320 (937)
Q Consensus 309 L~~~~l~~lp~~ 320 (937)
..++.+.++|..
T Consensus 130 s~~na~~eid~d 141 (177)
T KOG4579|consen 130 SPENARAEIDVD 141 (177)
T ss_pred CCCCccccCcHH
Confidence 777776666643
No 63
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.38 E-value=0.00071 Score=66.96 Aligned_cols=67 Identities=16% Similarity=0.142 Sum_probs=31.6
Q ss_pred cCCCcceeeccCcccceeccCCcccccccCCCccEEEEeccCCccccchHHHHhhccccceeeeccccchH
Q 002313 646 VFPSLKKLKLSSINVEKIWLNSFSAIESWGKNLTKLTVEKCGRLKFLFSSSMVNGLEQLQQLDISHCKSMN 716 (937)
Q Consensus 646 ~~~~L~~L~l~~c~l~~~~~~~~~~~~~~l~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~ 716 (937)
.||++..+.+..|.+++.....- ...+|.+.-|++... ++.+......+.++++|..|.+.+.|-..
T Consensus 197 ~Fpnv~sv~v~e~PlK~~s~ek~---se~~p~~~~LnL~~~-~idswasvD~Ln~f~~l~dlRv~~~Pl~d 263 (418)
T KOG2982|consen 197 IFPNVNSVFVCEGPLKTESSEKG---SEPFPSLSCLNLGAN-NIDSWASVDALNGFPQLVDLRVSENPLSD 263 (418)
T ss_pred hcccchheeeecCcccchhhccc---CCCCCcchhhhhccc-ccccHHHHHHHcCCchhheeeccCCcccc
Confidence 46666666666665554432222 112333333444332 23222223345566666666666555443
No 64
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.33 E-value=0.002 Score=63.18 Aligned_cols=55 Identities=27% Similarity=0.317 Sum_probs=23.4
Q ss_pred CCCCEEEccCCcccCcccccCCCCCcEEecccC--cCc-ccCcccccCccCCEEEecC
Q 002313 280 INLRTLSLENCLVVDVAIIGDLKKLEILSLKHS--SIE-QLPREIGQLTCLKLLDLSN 334 (937)
Q Consensus 280 ~~Lr~L~L~~~~~~~l~~i~~L~~L~~L~L~~~--~l~-~lp~~i~~L~~L~~L~l~~ 334 (937)
..|+.|.+.++.++.+..+-.|++|++|.++.| .+. .++.-..++++|++|++++
T Consensus 43 ~~le~ls~~n~gltt~~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~ 100 (260)
T KOG2739|consen 43 VELELLSVINVGLTTLTNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSG 100 (260)
T ss_pred cchhhhhhhccceeecccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecC
Confidence 334444444444444444444444444444444 221 2333333335555555544
No 65
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.23 E-value=0.00031 Score=68.73 Aligned_cols=100 Identities=22% Similarity=0.248 Sum_probs=53.2
Q ss_pred CCCccEEEecCCcCcccCccccCCCCCCEEEccCCcccCcccccCCCCCcEEecccCcCcccC--cccccCccCCEEEec
Q 002313 256 MTELRVLDLTGFRFHSLPSSLGCLINLRTLSLENCLVVDVAIIGDLKKLEILSLKHSSIEQLP--REIGQLTCLKLLDLS 333 (937)
Q Consensus 256 l~~Lr~L~L~~~~~~~lp~~i~~l~~Lr~L~L~~~~~~~l~~i~~L~~L~~L~L~~~~l~~lp--~~i~~L~~L~~L~l~ 333 (937)
+.+.+.|++.||.+..+. ...+++.|++|.|+-|.++.+..+..+++|+.|+|..|.|..+. ..+.++++|+.|.|.
T Consensus 18 l~~vkKLNcwg~~L~DIs-ic~kMp~lEVLsLSvNkIssL~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL~ 96 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLDDIS-ICEKMPLLEVLSLSVNKISSLAPLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWLD 96 (388)
T ss_pred HHHhhhhcccCCCccHHH-HHHhcccceeEEeeccccccchhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhhc
Confidence 334444555555544331 12345555555555555555555666666666666666665553 235566666666666
Q ss_pred CCCCCcccCh----hhhcCCCCCcEEE
Q 002313 334 NCSKLKEIRP----NVISNLTRLEELY 356 (937)
Q Consensus 334 ~~~~l~~lp~----~~l~~L~~L~~L~ 356 (937)
.|.-...-+. .++.-|+||+.|+
T Consensus 97 ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 97 ENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred cCCcccccchhHHHHHHHHcccchhcc
Confidence 5443333321 2245566666665
No 66
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=96.04 E-value=0.0047 Score=60.53 Aligned_cols=86 Identities=24% Similarity=0.308 Sum_probs=49.9
Q ss_pred CCCCccEEEecCCcCc-----ccCccccCCCCCCEEEccCCccc-----------Cc-ccccCCCCCcEEecccCcCc-c
Q 002313 255 GMTELRVLDLTGFRFH-----SLPSSLGCLINLRTLSLENCLVV-----------DV-AIIGDLKKLEILSLKHSSIE-Q 316 (937)
Q Consensus 255 ~l~~Lr~L~L~~~~~~-----~lp~~i~~l~~Lr~L~L~~~~~~-----------~l-~~i~~L~~L~~L~L~~~~l~-~ 316 (937)
.+..+..++||||.|. .+-..|.+-.+|+..+++.-... -+ +.+-++++|+..+||.|.+. .
T Consensus 28 ~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~ 107 (388)
T COG5238 28 MMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSE 107 (388)
T ss_pred hhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCcc
Confidence 3566777777777664 24445566677777777654221 11 45566777777777777543 3
Q ss_pred cCc----ccccCccCCEEEecCCCCCccc
Q 002313 317 LPR----EIGQLTCLKLLDLSNCSKLKEI 341 (937)
Q Consensus 317 lp~----~i~~L~~L~~L~l~~~~~l~~l 341 (937)
.|+ -|++-+.|.||.+++|. +..+
T Consensus 108 ~~e~L~d~is~~t~l~HL~l~NnG-lGp~ 135 (388)
T COG5238 108 FPEELGDLISSSTDLVHLKLNNNG-LGPI 135 (388)
T ss_pred cchHHHHHHhcCCCceeEEeecCC-CCcc
Confidence 332 34555667777766643 4433
No 67
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.59 E-value=0.0059 Score=35.38 Aligned_cols=22 Identities=45% Similarity=0.690 Sum_probs=16.0
Q ss_pred CccEEEecCCcCcccCccccCC
Q 002313 258 ELRVLDLTGFRFHSLPSSLGCL 279 (937)
Q Consensus 258 ~Lr~L~L~~~~~~~lp~~i~~l 279 (937)
+|++||+++|.++.+|.+|++|
T Consensus 1 ~L~~Ldls~n~l~~ip~~~~~l 22 (22)
T PF00560_consen 1 NLEYLDLSGNNLTSIPSSFSNL 22 (22)
T ss_dssp TESEEEETSSEESEEGTTTTT-
T ss_pred CccEEECCCCcCEeCChhhcCC
Confidence 4788888888888887776553
No 68
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=95.55 E-value=0.0082 Score=59.07 Aligned_cols=83 Identities=25% Similarity=0.315 Sum_probs=48.0
Q ss_pred cCCCCccEEEecCC--cCc-ccCccccCCCCCCEEEccCCcccCc---ccccCCCCCcEEecccCcCcccC----ccccc
Q 002313 254 EGMTELRVLDLTGF--RFH-SLPSSLGCLINLRTLSLENCLVVDV---AIIGDLKKLEILSLKHSSIEQLP----REIGQ 323 (937)
Q Consensus 254 ~~l~~Lr~L~L~~~--~~~-~lp~~i~~l~~Lr~L~L~~~~~~~l---~~i~~L~~L~~L~L~~~~l~~lp----~~i~~ 323 (937)
..+++|+.|.++.| ++. .++....++++|++|++++|++..+ ..+..+.+|..|++..|..+.+- ..+.-
T Consensus 62 P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~~Ldl~n~~~~~l~dyre~vf~l 141 (260)
T KOG2739|consen 62 PKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENLKSLDLFNCSVTNLDDYREKVFLL 141 (260)
T ss_pred CCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcchhhhhcccCCccccccHHHHHHHH
Confidence 34556666666666 222 3333344556777777777766544 44455666667777776555442 23556
Q ss_pred CccCCEEEecCCC
Q 002313 324 LTCLKLLDLSNCS 336 (937)
Q Consensus 324 L~~L~~L~l~~~~ 336 (937)
+++|.+||-..+.
T Consensus 142 l~~L~~LD~~dv~ 154 (260)
T KOG2739|consen 142 LPSLKYLDGCDVD 154 (260)
T ss_pred hhhhccccccccC
Confidence 6777777765543
No 69
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=95.50 E-value=0.047 Score=49.50 Aligned_cols=106 Identities=17% Similarity=0.346 Sum_probs=48.8
Q ss_pred CChhhhcCCCCccEEEecCCcCcccC-ccccCCCCCCEEEccCCcccCc--ccccCCCCCcEEecccCcCcccCc-cccc
Q 002313 248 IPDPFFEGMTELRVLDLTGFRFHSLP-SSLGCLINLRTLSLENCLVVDV--AIIGDLKKLEILSLKHSSIEQLPR-EIGQ 323 (937)
Q Consensus 248 ~~~~~~~~l~~Lr~L~L~~~~~~~lp-~~i~~l~~Lr~L~L~~~~~~~l--~~i~~L~~L~~L~L~~~~l~~lp~-~i~~ 323 (937)
++..+|.++.+|+.+.+.. .+..++ ..|..+.+|+.+.+.++ +..+ ..+.+..+|+.+.+.. .+..++. .+..
T Consensus 3 i~~~~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~ 79 (129)
T PF13306_consen 3 IGNNAFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSN 79 (129)
T ss_dssp E-TTTTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT
T ss_pred ECHHHHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-cccccccccccc
Confidence 3445566666666666654 445552 33555666666666553 4443 4455665666666654 4444443 3445
Q ss_pred CccCCEEEecCCCCCcccChhhhcCCCCCcEEEcCC
Q 002313 324 LTCLKLLDLSNCSKLKEIRPNVISNLTRLEELYMGN 359 (937)
Q Consensus 324 L~~L~~L~l~~~~~l~~lp~~~l~~L~~L~~L~l~~ 359 (937)
.++|+.+++.. .+..++...+.+. +|+.+.+..
T Consensus 80 ~~~l~~i~~~~--~~~~i~~~~f~~~-~l~~i~~~~ 112 (129)
T PF13306_consen 80 CTNLKNIDIPS--NITEIGSSSFSNC-NLKEINIPS 112 (129)
T ss_dssp -TTECEEEETT--T-BEEHTTTTTT--T--EEE-TT
T ss_pred cccccccccCc--cccEEchhhhcCC-CceEEEECC
Confidence 66677776654 2555555556665 666666543
No 70
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.50 E-value=0.0054 Score=35.56 Aligned_cols=21 Identities=24% Similarity=0.510 Sum_probs=13.1
Q ss_pred CCcEEecccCcCcccCccccc
Q 002313 303 KLEILSLKHSSIEQLPREIGQ 323 (937)
Q Consensus 303 ~L~~L~L~~~~l~~lp~~i~~ 323 (937)
+|++||+++|.++.+|.++++
T Consensus 1 ~L~~Ldls~n~l~~ip~~~~~ 21 (22)
T PF00560_consen 1 NLEYLDLSGNNLTSIPSSFSN 21 (22)
T ss_dssp TESEEEETSSEESEEGTTTTT
T ss_pred CccEEECCCCcCEeCChhhcC
Confidence 456666666666666665544
No 71
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.46 E-value=0.001 Score=65.30 Aligned_cols=97 Identities=26% Similarity=0.273 Sum_probs=74.4
Q ss_pred CCccceeeecCCcccccCChhhhcCCCCccEEEecCCcCcccCccccCCCCCCEEEccCCcccCc---ccccCCCCCcEE
Q 002313 231 FLKLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHSLPSSLGCLINLRTLSLENCLVVDV---AIIGDLKKLEIL 307 (937)
Q Consensus 231 ~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~lp~~i~~l~~Lr~L~L~~~~~~~l---~~i~~L~~L~~L 307 (937)
+.+.+.|++++|.+. .| +++.+++.|+||.|+-|.|++|- .+..+++|+.|.|+.|.+.++ .-+.++++|+.|
T Consensus 18 l~~vkKLNcwg~~L~-DI--sic~kMp~lEVLsLSvNkIssL~-pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~L 93 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLD-DI--SICEKMPLLEVLSLSVNKISSLA-PLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTL 93 (388)
T ss_pred HHHhhhhcccCCCcc-HH--HHHHhcccceeEEeeccccccch-hHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhH
Confidence 456677777777643 22 56789999999999999999884 388999999999999998876 567889999999
Q ss_pred ecccCc--CcccC----cccccCccCCEEE
Q 002313 308 SLKHSS--IEQLP----REIGQLTCLKLLD 331 (937)
Q Consensus 308 ~L~~~~--l~~lp----~~i~~L~~L~~L~ 331 (937)
.|..|- ...=+ ..+.-|++|+.||
T Consensus 94 WL~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 94 WLDENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred hhccCCcccccchhHHHHHHHHcccchhcc
Confidence 998762 22211 2356778888887
No 72
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.16 E-value=0.0039 Score=58.62 Aligned_cols=69 Identities=17% Similarity=0.238 Sum_probs=46.4
Q ss_pred ccCCCccEEEecCCCCcceeccCCCCcccCCCCcEEEEEcCCCcccccchhHHHhcCCCcEEeecccccce
Q 002313 803 VGLPKLEVLRIDGMDNLRKIWHHQLALDSFTKLKDLDVEYCDQLLSIFPSNMLRRLERLEHLAVSECGSIE 873 (937)
Q Consensus 803 ~~l~~L~~L~l~~c~~l~~l~~~~~~~~~l~~L~~L~i~~C~~L~~~~p~~~l~~l~~L~~L~i~~C~~l~ 873 (937)
..+++++.|.+.+|..+.+...+.+. +-.++|+.|+|++|+++++ .--..+..+++|+.|.|.+-+.+.
T Consensus 122 ~~l~~i~~l~l~~ck~~dD~~L~~l~-~~~~~L~~L~lsgC~rIT~-~GL~~L~~lknLr~L~l~~l~~v~ 190 (221)
T KOG3864|consen 122 RDLRSIKSLSLANCKYFDDWCLERLG-GLAPSLQDLDLSGCPRITD-GGLACLLKLKNLRRLHLYDLPYVA 190 (221)
T ss_pred hccchhhhheeccccchhhHHHHHhc-ccccchheeeccCCCeech-hHHHHHHHhhhhHHHHhcCchhhh
Confidence 35677888888888777665443332 2457888888888888877 333456677777777777765553
No 73
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.84 E-value=0.0071 Score=56.95 Aligned_cols=71 Identities=23% Similarity=0.406 Sum_probs=53.2
Q ss_pred HHHhhccccceeeeccccchHHHhccCCCCCCCcccccccccceeeeccCcccccccccCCCCcccccceeeccCCCc
Q 002313 696 SMVNGLEQLQQLDISHCKSMNEVINTRVGRDDNMIEMVFPKLVSLQLSHLPKLTRFGIGDSVEFPSLCQLQIACCPNL 773 (937)
Q Consensus 696 ~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~~~~~L~~L~i~~c~~l~~~~~~~~~~l~~L~~L~i~~C~~l 773 (937)
..+..+++++.|.+.+|..+....... ..+..++|+.|+|++|+.+++.....+..+++|+.|.+.+.+..
T Consensus 119 e~L~~l~~i~~l~l~~ck~~dD~~L~~-------l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L~l~~l~~v 189 (221)
T KOG3864|consen 119 EHLRDLRSIKSLSLANCKYFDDWCLER-------LGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRLHLYDLPYV 189 (221)
T ss_pred HHHhccchhhhheeccccchhhHHHHH-------hcccccchheeeccCCCeechhHHHHHHHhhhhHHHHhcCchhh
Confidence 455677778888888888776655431 11256889999999999999888888888888998888886655
No 74
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=94.58 E-value=0.087 Score=47.73 Aligned_cols=115 Identities=16% Similarity=0.290 Sum_probs=60.0
Q ss_pred CCCccceeeecCCcccccCChhhhcCCCCccEEEecCCcCcccCc-cccCCCCCCEEEccCCcccCc--ccccCCCCCcE
Q 002313 230 GFLKLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHSLPS-SLGCLINLRTLSLENCLVVDV--AIIGDLKKLEI 306 (937)
Q Consensus 230 ~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~lp~-~i~~l~~Lr~L~L~~~~~~~l--~~i~~L~~L~~ 306 (937)
.+.+|+.+.+... ...++...|..+..|+.+.+.++ +..++. .|.++..|+.+.+.. .+..+ ..+....+|+.
T Consensus 10 ~~~~l~~i~~~~~--~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l~~ 85 (129)
T PF13306_consen 10 NCSNLESITFPNT--IKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNLKN 85 (129)
T ss_dssp T-TT--EEEETST----EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTECE
T ss_pred CCCCCCEEEECCC--eeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-cccccccccccccccccc
Confidence 3557777777632 34567777888888888888774 666643 467777888888865 33333 56777888888
Q ss_pred EecccCcCcccCc-ccccCccCCEEEecCCCCCcccChhhhcCCCCC
Q 002313 307 LSLKHSSIEQLPR-EIGQLTCLKLLDLSNCSKLKEIRPNVISNLTRL 352 (937)
Q Consensus 307 L~L~~~~l~~lp~-~i~~L~~L~~L~l~~~~~l~~lp~~~l~~L~~L 352 (937)
+++..+ +..++. .+.+. +|+.+.+.. .+..++...+.+.++|
T Consensus 86 i~~~~~-~~~i~~~~f~~~-~l~~i~~~~--~~~~i~~~~F~~~~~l 128 (129)
T PF13306_consen 86 IDIPSN-ITEIGSSSFSNC-NLKEINIPS--NITKIEENAFKNCTKL 128 (129)
T ss_dssp EEETTT--BEEHTTTTTT--T--EEE-TT--B-SS----GGG-----
T ss_pred cccCcc-ccEEchhhhcCC-CceEEEECC--CccEECCccccccccC
Confidence 888764 666653 46665 888887764 4666777666666655
No 75
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=93.89 E-value=0.025 Score=55.62 Aligned_cols=123 Identities=16% Similarity=0.168 Sum_probs=77.7
Q ss_pred ccCCCCCCEEEccCCccc-----Cc-ccccCCCCCcEEecccCcC----cccC-------cccccCccCCEEEecCCCCC
Q 002313 276 LGCLINLRTLSLENCLVV-----DV-AIIGDLKKLEILSLKHSSI----EQLP-------REIGQLTCLKLLDLSNCSKL 338 (937)
Q Consensus 276 i~~l~~Lr~L~L~~~~~~-----~l-~~i~~L~~L~~L~L~~~~l----~~lp-------~~i~~L~~L~~L~l~~~~~l 338 (937)
+..+..+..++|+||.+. .+ ..|.+-.+|+..+++.-.. .++| +.+-++++|+..++++|..-
T Consensus 26 l~~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg 105 (388)
T COG5238 26 LEMMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFG 105 (388)
T ss_pred HHhhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccC
Confidence 445778889999999875 23 5677788899998876411 1333 34567899999999987655
Q ss_pred cccChh---hhcCCCCCcEEEcCCCcccceecCCCC------CChhhhcCCCCCCeEEeecCCCCCCCc
Q 002313 339 KEIRPN---VISNLTRLEELYMGNSFTQWKVEGQSN------ASLGELKQLSRLTTLEVHIPDAQVMPQ 398 (937)
Q Consensus 339 ~~lp~~---~l~~L~~L~~L~l~~~~~~~~~~~~~~------~~~~~l~~l~~L~~L~l~~~~~~~~~~ 398 (937)
...|+. .+++-++|.||.+++|.......+... +......+.+.|+...+..|.....+.
T Consensus 106 ~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRlengs~ 174 (388)
T COG5238 106 SEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLENGSK 174 (388)
T ss_pred cccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhccCcH
Confidence 555542 356778999999988865411101111 111223455667777777666555443
No 76
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=93.63 E-value=0.038 Score=29.59 Aligned_cols=17 Identities=18% Similarity=0.296 Sum_probs=9.7
Q ss_pred CccCeEEEecCCCcccCC
Q 002313 919 LVLKNLDVFECDKFETFS 936 (937)
Q Consensus 919 ~~L~~L~i~~C~~l~~lp 936 (937)
++|++|++++|. |++||
T Consensus 1 ~~L~~L~l~~n~-L~~lP 17 (17)
T PF13504_consen 1 PNLRTLDLSNNR-LTSLP 17 (17)
T ss_dssp TT-SEEEETSS---SSE-
T ss_pred CccCEEECCCCC-CCCCc
Confidence 467788888887 77776
No 77
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=93.36 E-value=0.058 Score=28.90 Aligned_cols=16 Identities=56% Similarity=0.860 Sum_probs=7.9
Q ss_pred CccEEEecCCcCcccC
Q 002313 258 ELRVLDLTGFRFHSLP 273 (937)
Q Consensus 258 ~Lr~L~L~~~~~~~lp 273 (937)
+||+|++++|+++++|
T Consensus 2 ~L~~L~l~~n~L~~lP 17 (17)
T PF13504_consen 2 NLRTLDLSNNRLTSLP 17 (17)
T ss_dssp T-SEEEETSS--SSE-
T ss_pred ccCEEECCCCCCCCCc
Confidence 5666777777666655
No 78
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=89.70 E-value=0.014 Score=55.93 Aligned_cols=83 Identities=16% Similarity=0.135 Sum_probs=55.3
Q ss_pred cCCCCccEEEecCCcCcccCccccCCCCCCEEEccCCcccCc-ccccCCCCCcEEecccCcCcccCcccccCccCCEEEe
Q 002313 254 EGMTELRVLDLTGFRFHSLPSSLGCLINLRTLSLENCLVVDV-AIIGDLKKLEILSLKHSSIEQLPREIGQLTCLKLLDL 332 (937)
Q Consensus 254 ~~l~~Lr~L~L~~~~~~~lp~~i~~l~~Lr~L~L~~~~~~~l-~~i~~L~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~l 332 (937)
..++...+||++.|++..+-..|+.++.|..|+++.+.+..+ ..++.+..++++++..|+.+..|.+.++++++++++.
T Consensus 39 ~~~kr~tvld~~s~r~vn~~~n~s~~t~~~rl~~sknq~~~~~~d~~q~~e~~~~~~~~n~~~~~p~s~~k~~~~k~~e~ 118 (326)
T KOG0473|consen 39 ASFKRVTVLDLSSNRLVNLGKNFSILTRLVRLDLSKNQIKFLPKDAKQQRETVNAASHKNNHSQQPKSQKKEPHPKKNEQ 118 (326)
T ss_pred hccceeeeehhhhhHHHhhccchHHHHHHHHHhccHhhHhhChhhHHHHHHHHHHHhhccchhhCCccccccCCcchhhh
Confidence 455666777777776666666666666666666666666554 5666666666666666667777777777777777776
Q ss_pred cCCC
Q 002313 333 SNCS 336 (937)
Q Consensus 333 ~~~~ 336 (937)
.++.
T Consensus 119 k~~~ 122 (326)
T KOG0473|consen 119 KKTE 122 (326)
T ss_pred ccCc
Confidence 6543
No 79
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=87.99 E-value=0.37 Score=29.15 Aligned_cols=20 Identities=30% Similarity=0.499 Sum_probs=12.8
Q ss_pred CCCCcEEecccCcCcccCcc
Q 002313 301 LKKLEILSLKHSSIEQLPRE 320 (937)
Q Consensus 301 L~~L~~L~L~~~~l~~lp~~ 320 (937)
+.+|++|++++|.++.+|.+
T Consensus 1 L~~L~~L~L~~N~l~~lp~~ 20 (26)
T smart00370 1 LPNLRELDLSNNQLSSLPPG 20 (26)
T ss_pred CCCCCEEECCCCcCCcCCHH
Confidence 35666666766667666654
No 80
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=87.99 E-value=0.37 Score=29.15 Aligned_cols=20 Identities=30% Similarity=0.499 Sum_probs=12.8
Q ss_pred CCCCcEEecccCcCcccCcc
Q 002313 301 LKKLEILSLKHSSIEQLPRE 320 (937)
Q Consensus 301 L~~L~~L~L~~~~l~~lp~~ 320 (937)
+.+|++|++++|.++.+|.+
T Consensus 1 L~~L~~L~L~~N~l~~lp~~ 20 (26)
T smart00369 1 LPNLRELDLSNNQLSSLPPG 20 (26)
T ss_pred CCCCCEEECCCCcCCcCCHH
Confidence 35666666766667666654
No 81
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=86.55 E-value=0.029 Score=53.90 Aligned_cols=86 Identities=13% Similarity=0.089 Sum_probs=75.5
Q ss_pred cccCCCCCCEEEccCCcccCc-ccccCCCCCcEEecccCcCcccCcccccCccCCEEEecCCCCCcccChhhhcCCCCCc
Q 002313 275 SLGCLINLRTLSLENCLVVDV-AIIGDLKKLEILSLKHSSIEQLPREIGQLTCLKLLDLSNCSKLKEIRPNVISNLTRLE 353 (937)
Q Consensus 275 ~i~~l~~Lr~L~L~~~~~~~l-~~i~~L~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~l~~L~~L~ 353 (937)
.+.....-.+||++.+++..+ ..++.++.|..|+++.+.+..+|..++++..++++++.. +.....|.+ .++++.++
T Consensus 37 ei~~~kr~tvld~~s~r~vn~~~n~s~~t~~~rl~~sknq~~~~~~d~~q~~e~~~~~~~~-n~~~~~p~s-~~k~~~~k 114 (326)
T KOG0473|consen 37 EIASFKRVTVLDLSSNRLVNLGKNFSILTRLVRLDLSKNQIKFLPKDAKQQRETVNAASHK-NNHSQQPKS-QKKEPHPK 114 (326)
T ss_pred hhhccceeeeehhhhhHHHhhccchHHHHHHHHHhccHhhHhhChhhHHHHHHHHHHHhhc-cchhhCCcc-ccccCCcc
Confidence 366778889999999998888 889999999999999999999999999999999999987 458889987 89999999
Q ss_pred EEEcCCCcc
Q 002313 354 ELYMGNSFT 362 (937)
Q Consensus 354 ~L~l~~~~~ 362 (937)
.++..++.+
T Consensus 115 ~~e~k~~~~ 123 (326)
T KOG0473|consen 115 KNEQKKTEF 123 (326)
T ss_pred hhhhccCcc
Confidence 988877643
No 82
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=83.70 E-value=0.8 Score=27.66 Aligned_cols=21 Identities=38% Similarity=0.616 Sum_probs=15.3
Q ss_pred CCCccEEEecCCcCcccCccc
Q 002313 256 MTELRVLDLTGFRFHSLPSSL 276 (937)
Q Consensus 256 l~~Lr~L~L~~~~~~~lp~~i 276 (937)
+.+|++|+|++|.+..+|...
T Consensus 1 L~~L~~L~L~~N~l~~lp~~~ 21 (26)
T smart00370 1 LPNLRELDLSNNQLSSLPPGA 21 (26)
T ss_pred CCCCCEEECCCCcCCcCCHHH
Confidence 356788888888888887653
No 83
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=83.70 E-value=0.8 Score=27.66 Aligned_cols=21 Identities=38% Similarity=0.616 Sum_probs=15.3
Q ss_pred CCCccEEEecCCcCcccCccc
Q 002313 256 MTELRVLDLTGFRFHSLPSSL 276 (937)
Q Consensus 256 l~~Lr~L~L~~~~~~~lp~~i 276 (937)
+.+|++|+|++|.+..+|...
T Consensus 1 L~~L~~L~L~~N~l~~lp~~~ 21 (26)
T smart00369 1 LPNLRELDLSNNQLSSLPPGA 21 (26)
T ss_pred CCCCCEEECCCCcCCcCCHHH
Confidence 356788888888888887653
No 84
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=81.89 E-value=5.8 Score=41.24 Aligned_cols=71 Identities=15% Similarity=0.135 Sum_probs=53.2
Q ss_pred CCcccCCCCCHHHHHHHHHHHh---CCCCCCCchhHHHHHHHHhcCCCchHHHHHHHHh------cC--C-ChhHHHHHH
Q 002313 7 SEDFLDWLLSNEEASHLFEKIV---GHSAKKSDFETIGVEIVAKCGGLPIAIKTIANAL------KN--K-SPRIWKDAV 74 (937)
Q Consensus 7 ~~~~~l~~L~~~~~~~lf~~~~---~~~~~~~~~~~i~~~i~~kc~GlPLai~~ig~~L------~~--~-~~~~W~~~l 74 (937)
...+++++++.+|..+++...+ |......--.+..+.|++.++|.|..|..++..+ .+ . +.+.++.++
T Consensus 184 ~~~~~l~~l~~~e~~~~l~~~l~~~g~~~~~~~~~~~~~~i~~~s~G~p~~i~~l~~~~~~~a~~~~~~~i~~~~v~~~~ 263 (269)
T TIGR03015 184 IASCHLGPLDREETREYIEHRLERAGNRDAPVFSEGAFDAIHRFSRGIPRLINILCDRLLLSAFLEEKREIGGEEVREVI 263 (269)
T ss_pred eeeeeCCCCCHHHHHHHHHHHHHHcCCCCCCCcCHHHHHHHHHHcCCcccHHHHHHHHHHHHHHHcCCCCCCHHHHHHHH
Confidence 4467899999999999999887 2222222235788999999999999999988886 11 2 777777777
Q ss_pred HHh
Q 002313 75 NQL 77 (937)
Q Consensus 75 ~~l 77 (937)
.++
T Consensus 264 ~~~ 266 (269)
T TIGR03015 264 AEI 266 (269)
T ss_pred HHh
Confidence 654
No 85
>PRK04841 transcriptional regulator MalT; Provisional
Probab=80.99 E-value=8.6 Score=48.28 Aligned_cols=146 Identities=13% Similarity=0.266 Sum_probs=89.6
Q ss_pred CCCHHHHHHHHHHHhCCCCCCCchhHHHHHHHHhcCCCchHHHHHHHHhcCCChhHHHHHHHHhhcCCCCCccccccccc
Q 002313 14 LLSNEEASHLFEKIVGHSAKKSDFETIGVEIVAKCGGLPIAIKTIANALKNKSPRIWKDAVNQLSNSNPRKIQGMDADLS 93 (937)
Q Consensus 14 ~L~~~~~~~lf~~~~~~~~~~~~~~~i~~~i~~kc~GlPLai~~ig~~L~~~~~~~W~~~l~~l~~~~~~~~~~~~~~~~ 93 (937)
.++.+|+-++|....|.... .+...+|.+.++|.|+++..++..++..... -......+.......+.+ -
T Consensus 185 ~f~~~e~~~ll~~~~~~~~~----~~~~~~l~~~t~Gwp~~l~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~-----~ 254 (903)
T PRK04841 185 AFDHQEAQQFFDQRLSSPIE----AAESSRLCDDVEGWATALQLIALSARQNNSS-LHDSARRLAGINASHLSD-----Y 254 (903)
T ss_pred CCCHHHHHHHHHhccCCCCC----HHHHHHHHHHhCChHHHHHHHHHHHhhCCCc-hhhhhHhhcCCCchhHHH-----H
Confidence 89999999999987765322 2456789999999999999988877544210 011111111000001111 0
Q ss_pred cccccccccCchhHHHHHHHhcCCCCCCcccHHHHHHHHhhcccccCcchHHHHHHHHHHHHHHHhhccccc-ccC-CCC
Q 002313 94 SIELSYEFLKCKEVKSLFQLCGLLKDGSRIAVDDLLRYVMGLRLLTNADTLEAARNRVHTLIDNLKSASLLF-DGD-SED 171 (937)
Q Consensus 94 ~l~~sY~~L~~~~lk~cfl~~~~fp~~~~i~~~~li~~w~a~g~~~~~~~~~~~~~~~~~~~~~L~~~~~~~-~~~-~~~ 171 (937)
...--|+.||.. .+..+...|+++ .|+.+ +... +.+.. ++ .+.+++|...+++. ..+ ...
T Consensus 255 l~~~v~~~l~~~-~~~~l~~~a~~~---~~~~~-l~~~-----l~~~~----~~----~~~L~~l~~~~l~~~~~~~~~~ 316 (903)
T PRK04841 255 LVEEVLDNVDLE-TRHFLLRCSVLR---SMNDA-LIVR-----VTGEE----NG----QMRLEELERQGLFIQRMDDSGE 316 (903)
T ss_pred HHHHHHhcCCHH-HHHHHHHhcccc---cCCHH-HHHH-----HcCCC----cH----HHHHHHHHHCCCeeEeecCCCC
Confidence 112237799997 899999999987 34432 2221 11111 11 24678888888865 332 334
Q ss_pred ceeeehhhHHHHHHHH
Q 002313 172 HAKMHRIIHAIAVSIA 187 (937)
Q Consensus 172 ~~~mhd~i~~la~~~~ 187 (937)
.|+.|++++++.....
T Consensus 317 ~yr~H~L~r~~l~~~l 332 (903)
T PRK04841 317 WFRYHPLFASFLRHRC 332 (903)
T ss_pred EEehhHHHHHHHHHHH
Confidence 6889999999987654
No 86
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=80.94 E-value=0.82 Score=27.68 Aligned_cols=16 Identities=25% Similarity=0.463 Sum_probs=12.1
Q ss_pred CCccCeEEEecCCCcc
Q 002313 918 WLVLKNLDVFECDKFE 933 (937)
Q Consensus 918 ~~~L~~L~i~~C~~l~ 933 (937)
||+|++|++++|+++.
T Consensus 1 c~~L~~L~l~~C~~it 16 (26)
T smart00367 1 CPNLRELDLSGCTNIT 16 (26)
T ss_pred CCCCCEeCCCCCCCcC
Confidence 4678888888888764
No 87
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=78.52 E-value=5 Score=43.17 Aligned_cols=108 Identities=14% Similarity=0.083 Sum_probs=61.8
Q ss_pred CCcccCCCCCHHHHHHHHHHHhCCCCCCCchhHHHHHHHHhcCCCchHHHHHHHHhcCCChhHHHHHHHHhhcCCCCCcc
Q 002313 7 SEDFLDWLLSNEEASHLFEKIVGHSAKKSDFETIGVEIVAKCGGLPIAIKTIANALKNKSPRIWKDAVNQLSNSNPRKIQ 86 (937)
Q Consensus 7 ~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~i~~~i~~kc~GlPLai~~ig~~L~~~~~~~W~~~l~~l~~~~~~~~~ 86 (937)
+..++++.++++|..+++.+.++.... .--.+....|++.|+|.|=.+..+...+ ..|..+.+ ...+.
T Consensus 172 ~~~~~l~~~~~~e~~~il~~~~~~~~~-~~~~~~~~~ia~~~~G~pR~a~~~l~~~-----~~~a~~~~------~~~I~ 239 (328)
T PRK00080 172 GIVQRLEFYTVEELEKIVKRSARILGV-EIDEEGALEIARRSRGTPRIANRLLRRV-----RDFAQVKG------DGVIT 239 (328)
T ss_pred CeeeecCCCCHHHHHHHHHHHHHHcCC-CcCHHHHHHHHHHcCCCchHHHHHHHHH-----HHHHHHcC------CCCCC
Confidence 456899999999999999999843211 1123578899999999994333333321 12221110 00111
Q ss_pred --ccccccccccccccccCchhHHHHHH-HhcCCCCCCcccHHHH
Q 002313 87 --GMDADLSSIELSYEFLKCKEVKSLFQ-LCGLLKDGSRIAVDDL 128 (937)
Q Consensus 87 --~~~~~~~~l~~sY~~L~~~~lk~cfl-~~~~fp~~~~i~~~~l 128 (937)
.....+..+...|..|+.. -+.-+. ....|+.+ .+..+.+
T Consensus 240 ~~~v~~~l~~~~~~~~~l~~~-~~~~l~~~~~~~~~~-~~~~~~~ 282 (328)
T PRK00080 240 KEIADKALDMLGVDELGLDEM-DRKYLRTIIEKFGGG-PVGLDTL 282 (328)
T ss_pred HHHHHHHHHHhCCCcCCCCHH-HHHHHHHHHHHcCCC-ceeHHHH
Confidence 1111244456777888776 344443 55666655 3555544
No 88
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=71.07 E-value=48 Score=35.12 Aligned_cols=53 Identities=13% Similarity=0.082 Sum_probs=38.2
Q ss_pred CCcccCCCCCHHHHHHHHHHHhCCCCCCCchhHHHHHHHHhcCCCchHHHHHHH
Q 002313 7 SEDFLDWLLSNEEASHLFEKIVGHSAKKSDFETIGVEIVAKCGGLPIAIKTIAN 60 (937)
Q Consensus 7 ~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~i~~~i~~kc~GlPLai~~ig~ 60 (937)
...++++.++++|..+++.+.++.... .--.+....|++.|+|.|=.+..++.
T Consensus 151 ~~~~~l~~l~~~e~~~il~~~~~~~~~-~~~~~al~~ia~~~~G~pR~~~~ll~ 203 (305)
T TIGR00635 151 GIILRLEFYTVEELAEIVSRSAGLLNV-EIEPEAALEIARRSRGTPRIANRLLR 203 (305)
T ss_pred ceEEEeCCCCHHHHHHHHHHHHHHhCC-CcCHHHHHHHHHHhCCCcchHHHHHH
Confidence 456899999999999999999843211 11235678899999999955444443
No 89
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=61.48 E-value=5.1 Score=24.19 Aligned_cols=17 Identities=24% Similarity=0.522 Sum_probs=12.4
Q ss_pred CCcEEecccCcCcccCc
Q 002313 303 KLEILSLKHSSIEQLPR 319 (937)
Q Consensus 303 ~L~~L~L~~~~l~~lp~ 319 (937)
+|+.|++++|+++++|+
T Consensus 3 ~L~~L~vs~N~Lt~LPe 19 (26)
T smart00364 3 SLKELNVSNNQLTSLPE 19 (26)
T ss_pred ccceeecCCCccccCcc
Confidence 56777777777777775
No 90
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=57.68 E-value=8.9 Score=23.27 Aligned_cols=10 Identities=30% Similarity=0.328 Sum_probs=3.9
Q ss_pred CCEEEccCCc
Q 002313 282 LRTLSLENCL 291 (937)
Q Consensus 282 Lr~L~L~~~~ 291 (937)
|+.|++++|+
T Consensus 4 L~~L~L~~Nk 13 (26)
T smart00365 4 LEELDLSQNK 13 (26)
T ss_pred cCEEECCCCc
Confidence 3333333333
No 91
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=49.93 E-value=0.3 Score=54.84 Aligned_cols=132 Identities=20% Similarity=0.213 Sum_probs=64.5
Q ss_pred CccEEEecCCcCc-----ccCccccCCCCCCEEEccCCcccCc------cc----ccCCCCCcEEecccCcCcc-----c
Q 002313 258 ELRVLDLTGFRFH-----SLPSSLGCLINLRTLSLENCLVVDV------AI----IGDLKKLEILSLKHSSIEQ-----L 317 (937)
Q Consensus 258 ~Lr~L~L~~~~~~-----~lp~~i~~l~~Lr~L~L~~~~~~~l------~~----i~~L~~L~~L~L~~~~l~~-----l 317 (937)
.|++|++..|.+. .+.+.+....+++.++++.|.+... .. +....++++|++.+|.++. +
T Consensus 145 ~l~~L~l~~c~l~~~g~~~l~~~L~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l 224 (478)
T KOG4308|consen 145 LLQTLELVSCSLTSEGAAPLAAVLEKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALL 224 (478)
T ss_pred HHHHHHhhcccccccchHHHHHHHhcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHH
Confidence 3455555555543 2344455566666666666654211 12 2345666666666665541 1
Q ss_pred CcccccCcc-CCEEEecCCCCCccc-----ChhhhcCC-CCCcEEEcCCCcccceecCCCCCChhhhcCCCCCCeEEeec
Q 002313 318 PREIGQLTC-LKLLDLSNCSKLKEI-----RPNVISNL-TRLEELYMGNSFTQWKVEGQSNASLGELKQLSRLTTLEVHI 390 (937)
Q Consensus 318 p~~i~~L~~-L~~L~l~~~~~l~~l-----p~~~l~~L-~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~ 390 (937)
-..+...++ ++.|++..|. +.+. .+. +..+ ..+++++++.|.+.. .........+..+.+++.+.++.
T Consensus 225 ~~~l~~~~~~~~el~l~~n~-l~d~g~~~L~~~-l~~~~~~l~~l~l~~nsi~~---~~~~~L~~~l~~~~~l~~l~l~~ 299 (478)
T KOG4308|consen 225 DEVLASGESLLRELDLASNK-LGDVGVEKLLPC-LSVLSETLRVLDLSRNSITE---KGVRDLAEVLVSCRQLEELSLSN 299 (478)
T ss_pred HHHHhccchhhHHHHHHhcC-cchHHHHHHHHH-hcccchhhhhhhhhcCCccc---cchHHHHHHHhhhHHHHHhhccc
Confidence 112333344 4556665532 2221 222 3344 566777777766541 11112234445555677777766
Q ss_pred CCCC
Q 002313 391 PDAQ 394 (937)
Q Consensus 391 ~~~~ 394 (937)
+...
T Consensus 300 n~l~ 303 (478)
T KOG4308|consen 300 NPLT 303 (478)
T ss_pred Cccc
Confidence 6543
No 92
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=49.53 E-value=10 Score=22.17 Aligned_cols=11 Identities=55% Similarity=0.601 Sum_probs=4.2
Q ss_pred CCCEEEccCCc
Q 002313 281 NLRTLSLENCL 291 (937)
Q Consensus 281 ~Lr~L~L~~~~ 291 (937)
+|++|++++|.
T Consensus 3 ~L~~L~l~~n~ 13 (24)
T PF13516_consen 3 NLETLDLSNNQ 13 (24)
T ss_dssp T-SEEE-TSSB
T ss_pred CCCEEEccCCc
Confidence 44444444444
No 93
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=36.61 E-value=26 Score=21.57 Aligned_cols=12 Identities=42% Similarity=0.645 Sum_probs=6.6
Q ss_pred CccEEEecCCcC
Q 002313 258 ELRVLDLTGFRF 269 (937)
Q Consensus 258 ~Lr~L~L~~~~~ 269 (937)
+|++|+|++|.+
T Consensus 3 ~L~~LdL~~N~i 14 (28)
T smart00368 3 SLRELDLSNNKL 14 (28)
T ss_pred ccCEEECCCCCC
Confidence 455555555554
No 94
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=25.99 E-value=2.4e+02 Score=23.84 Aligned_cols=60 Identities=7% Similarity=0.176 Sum_probs=44.4
Q ss_pred HHHHHHHHH---hC-CCCCCCchhHHHHHHHHhcCCCchHHHHHHHHhc-CC-ChhHHHHHHHHhh
Q 002313 19 EASHLFEKI---VG-HSAKKSDFETIGVEIVAKCGGLPIAIKTIANALK-NK-SPRIWKDAVNQLS 78 (937)
Q Consensus 19 ~~~~lf~~~---~~-~~~~~~~~~~i~~~i~~kc~GlPLai~~ig~~L~-~~-~~~~W~~~l~~l~ 78 (937)
|.|++=+.- .| +-.|.|....-|-+..++.+..|+|++.+-+.=. .. ..+.|..++++++
T Consensus 22 D~we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~~~~~~~y~~~lqeik 87 (103)
T cd00923 22 DGWELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDKCGAHKEIYPYILQEIK 87 (103)
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccCchhhHHHHHHHHh
Confidence 667763322 24 3478899999999999999999999999877652 22 4567998888765
No 95
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=24.18 E-value=1.4e+02 Score=25.32 Aligned_cols=49 Identities=6% Similarity=0.180 Sum_probs=34.8
Q ss_pred CCCCCCchhHHHHHHHHhcCCCchHHHHHHHHhcCC-C-hhHHHHHHHHhh
Q 002313 30 HSAKKSDFETIGVEIVAKCGGLPIAIKTIANALKNK-S-PRIWKDAVNQLS 78 (937)
Q Consensus 30 ~~~~~~~~~~i~~~i~~kc~GlPLai~~ig~~L~~~-~-~~~W~~~l~~l~ 78 (937)
+-.|.|....-|-+.+++.+..|+|++++-+.=... + .+.|..+++.|+
T Consensus 40 DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~~~~~~~Y~~~lqElk 90 (108)
T PF02284_consen 40 DLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKCGNKKEIYPYILQELK 90 (108)
T ss_dssp SB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTT-TTHHHHHHHHHH
T ss_pred ccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccChHHHHHHHHHHHh
Confidence 346788888999999999999999999987664322 3 337988888765
No 96
>PF14164 YqzH: YqzH-like protein
Probab=23.69 E-value=1.6e+02 Score=22.51 Aligned_cols=35 Identities=26% Similarity=0.251 Sum_probs=28.6
Q ss_pred cCCCCCHHHHHHHHHHHh--CCCCCCCchhHHHHHHH
Q 002313 11 LDWLLSNEEASHLFEKIV--GHSAKKSDFETIGVEIV 45 (937)
Q Consensus 11 ~l~~L~~~~~~~lf~~~~--~~~~~~~~~~~i~~~i~ 45 (937)
+..+|+++|-..|+.+.. ....+..++-++..+||
T Consensus 22 ~~~pls~~E~~~L~~~i~~~~~~~~~~Dl~eiVeDvV 58 (64)
T PF14164_consen 22 ECMPLSDEEWEELCKHIQERKNEEPDEDLHEIVEDVV 58 (64)
T ss_pred cCCCCCHHHHHHHHHHHHHHHhcCCCchHHHHHHHHH
Confidence 788999999888888887 45667778888888876
No 97
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=21.26 E-value=6 Score=44.59 Aligned_cols=130 Identities=25% Similarity=0.273 Sum_probs=82.5
Q ss_pred ccceeeecCCcccc----cCChhhhcCCCCccEEEecCCcCc-----ccCcc----ccCCCCCCEEEccCCcccCc----
Q 002313 233 KLKLFLFFTENLSL----QIPDPFFEGMTELRVLDLTGFRFH-----SLPSS----LGCLINLRTLSLENCLVVDV---- 295 (937)
Q Consensus 233 ~L~~L~l~~~~~~~----~~~~~~~~~l~~Lr~L~L~~~~~~-----~lp~~----i~~l~~Lr~L~L~~~~~~~l---- 295 (937)
.+++|.+..|.... .+... +.+..+++.++++.|.+. .++.. +....++++|.+.+|.++..
T Consensus 145 ~l~~L~l~~c~l~~~g~~~l~~~-L~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~ 223 (478)
T KOG4308|consen 145 LLQTLELVSCSLTSEGAAPLAAV-LEKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCAL 223 (478)
T ss_pred HHHHHHhhcccccccchHHHHHH-HhcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHH
Confidence 44555554444321 23333 455778888888888763 12333 33578899999999987632
Q ss_pred --ccccCCCC-CcEEecccCcCc-----ccCcccccC-ccCCEEEecCCCCCcccCh---hhhcCCCCCcEEEcCCCccc
Q 002313 296 --AIIGDLKK-LEILSLKHSSIE-----QLPREIGQL-TCLKLLDLSNCSKLKEIRP---NVISNLTRLEELYMGNSFTQ 363 (937)
Q Consensus 296 --~~i~~L~~-L~~L~L~~~~l~-----~lp~~i~~L-~~L~~L~l~~~~~l~~lp~---~~l~~L~~L~~L~l~~~~~~ 363 (937)
..+..... ++.|++..|.+. .+.+.+..+ ..+++++++.|+....-.. ..+....++++|.++++.+.
T Consensus 224 l~~~l~~~~~~~~el~l~~n~l~d~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~ 303 (478)
T KOG4308|consen 224 LDEVLASGESLLRELDLASNKLGDVGVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLT 303 (478)
T ss_pred HHHHHhccchhhHHHHHHhcCcchHHHHHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCccc
Confidence 34566666 777999888665 345556666 7889999998763332221 12456678888888887654
Done!