Query 002313
Match_columns 937
No_of_seqs 474 out of 4166
Neff 10.3
Searched_HMMs 29240
Date Mon Mar 25 21:18:30 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002313.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/002313hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rgz_A Protein brassinosteroid 100.0 8.7E-36 3E-40 359.7 34.0 624 209-932 76-740 (768)
2 1ziw_A TOLL-like receptor 3; i 100.0 1.8E-34 6E-39 345.7 36.9 583 201-904 16-620 (680)
3 3rgz_A Protein brassinosteroid 100.0 1.8E-35 6.3E-40 356.9 28.3 587 210-936 50-721 (768)
4 3vq2_A TLR4, TOLL-like recepto 100.0 5.2E-33 1.8E-37 328.4 37.2 528 212-905 13-557 (606)
5 1ziw_A TOLL-like receptor 3; i 100.0 5.9E-33 2E-37 332.5 34.9 544 207-871 46-621 (680)
6 3vq2_A TLR4, TOLL-like recepto 100.0 3.3E-33 1.1E-37 330.1 28.9 524 198-872 20-558 (606)
7 3t6q_A CD180 antigen; protein- 100.0 2.1E-32 7.2E-37 323.2 34.7 529 214-870 16-558 (606)
8 3t6q_A CD180 antigen; protein- 100.0 4E-32 1.4E-36 320.8 33.7 530 198-847 21-561 (606)
9 2z63_A TOLL-like receptor 4, v 100.0 9E-31 3.1E-35 307.2 28.7 496 200-870 18-529 (570)
10 3j0a_A TOLL-like receptor 5; m 100.0 4.4E-30 1.5E-34 313.2 35.6 522 197-870 12-558 (844)
11 3j0a_A TOLL-like receptor 5; m 100.0 1.8E-30 6.2E-35 316.6 28.5 533 213-906 7-560 (844)
12 2z81_A CD282 antigen, TOLL-lik 100.0 3E-30 1E-34 301.0 26.8 187 216-411 11-204 (549)
13 2z63_A TOLL-like receptor 4, v 100.0 4.6E-29 1.6E-33 292.7 33.1 510 212-904 9-529 (570)
14 2z81_A CD282 antigen, TOLL-lik 100.0 2.7E-28 9.1E-33 284.5 21.3 469 199-772 15-509 (549)
15 2z7x_B TOLL-like receptor 1, v 100.0 4.3E-27 1.5E-31 272.1 28.5 143 213-362 3-150 (520)
16 4g8a_A TOLL-like receptor 4; l 100.0 3.4E-26 1.2E-30 272.4 36.7 535 213-904 34-578 (635)
17 4g8a_A TOLL-like receptor 4; l 100.0 1.2E-26 4.3E-31 276.1 29.6 524 198-870 40-578 (635)
18 2z7x_B TOLL-like receptor 1, v 99.9 1.5E-26 5E-31 267.6 25.8 460 235-870 3-479 (520)
19 4ecn_A Leucine-rich repeat pro 99.9 9.8E-27 3.3E-31 277.5 24.5 365 267-747 435-839 (876)
20 4eco_A Uncharacterized protein 99.9 1.1E-26 3.8E-31 273.4 22.8 391 267-774 193-633 (636)
21 4eco_A Uncharacterized protein 99.9 3.5E-26 1.2E-30 269.1 21.4 355 248-688 198-599 (636)
22 4ecn_A Leucine-rich repeat pro 99.9 9.5E-26 3.2E-30 269.0 23.6 161 232-398 323-565 (876)
23 3a79_B TLR6, VLRB.59, TOLL-lik 99.9 6.7E-25 2.3E-29 255.7 29.5 145 211-362 32-181 (562)
24 3a79_B TLR6, VLRB.59, TOLL-lik 99.9 2.3E-24 7.9E-29 251.2 25.0 467 230-870 29-508 (562)
25 1o6v_A Internalin A; bacterial 99.9 5.1E-24 1.8E-28 241.9 27.2 343 208-713 44-386 (466)
26 1o6v_A Internalin A; bacterial 99.9 1.4E-23 4.7E-28 238.3 26.0 348 230-752 44-391 (466)
27 1jl5_A Outer protein YOPM; leu 99.9 3.9E-24 1.3E-28 240.2 18.5 145 230-395 9-167 (454)
28 3v47_A TOLL-like receptor 5B a 99.9 9.5E-24 3.2E-28 239.8 21.8 145 214-362 14-166 (455)
29 2a5y_B CED-4; apoptosis; HET: 99.9 1.4E-24 4.9E-29 249.7 8.9 171 6-191 284-472 (549)
30 3o6n_A APL1; leucine-rich repe 99.9 1.4E-22 4.7E-27 224.7 24.5 155 226-392 39-197 (390)
31 1jl5_A Outer protein YOPM; leu 99.9 2.1E-23 7.2E-28 234.2 17.8 345 209-687 10-368 (454)
32 3bz5_A Internalin-J, INLJ; leu 99.9 1E-22 3.4E-27 228.9 22.7 166 208-395 40-205 (457)
33 4fmz_A Internalin; leucine ric 99.9 1.9E-22 6.4E-27 220.0 23.7 170 208-393 42-211 (347)
34 3v47_A TOLL-like receptor 5B a 99.9 1.1E-22 3.7E-27 231.1 19.1 370 198-609 19-409 (455)
35 2id5_A Lingo-1, leucine rich r 99.9 1.6E-21 5.5E-26 222.5 27.7 171 213-393 14-188 (477)
36 3oja_B Anopheles plasmodium-re 99.9 1E-21 3.5E-26 229.9 24.3 154 227-392 46-203 (597)
37 4fmz_A Internalin; leucine ric 99.9 3.6E-21 1.2E-25 209.8 25.5 303 230-606 42-344 (347)
38 3bz5_A Internalin-J, INLJ; leu 99.9 2.5E-21 8.7E-26 217.4 23.8 310 230-686 40-349 (457)
39 3o6n_A APL1; leucine-rich repe 99.9 6.5E-21 2.2E-25 211.2 23.8 302 208-606 43-350 (390)
40 2id5_A Lingo-1, leucine rich r 99.9 4.1E-21 1.4E-25 219.2 21.9 304 198-569 20-331 (477)
41 3oja_B Anopheles plasmodium-re 99.9 2.2E-20 7.4E-25 218.6 24.1 302 208-606 49-356 (597)
42 4fcg_A Uncharacterized protein 99.8 8.3E-20 2.8E-24 196.1 17.9 221 256-567 80-310 (328)
43 3ogk_B Coronatine-insensitive 99.8 4.6E-21 1.6E-25 225.6 8.0 125 231-358 111-251 (592)
44 1xku_A Decorin; proteoglycan, 99.8 1.1E-18 3.8E-23 188.4 25.7 150 233-394 32-184 (330)
45 1ogq_A PGIP-2, polygalacturona 99.8 1.3E-19 4.6E-24 193.3 15.9 245 210-514 50-304 (313)
46 2ft3_A Biglycan; proteoglycan, 99.8 3.7E-19 1.3E-23 192.2 19.5 153 233-398 34-189 (332)
47 3ogk_B Coronatine-insensitive 99.8 1.9E-20 6.5E-25 220.3 9.0 36 530-566 291-326 (592)
48 1xku_A Decorin; proteoglycan, 99.8 4.7E-18 1.6E-22 183.5 24.7 170 211-395 32-206 (330)
49 4fcg_A Uncharacterized protein 99.8 5.6E-19 1.9E-23 189.6 16.3 175 208-393 79-265 (328)
50 2p1m_B Transport inhibitor res 99.8 1.9E-20 6.6E-25 220.5 3.5 128 231-359 104-244 (594)
51 2z80_A TOLL-like receptor 2, v 99.8 6.9E-19 2.4E-23 191.9 15.3 174 213-395 34-212 (353)
52 2p1m_B Transport inhibitor res 99.8 5.4E-20 1.8E-24 216.6 5.9 131 252-391 100-245 (594)
53 1ozn_A Reticulon 4 receptor; N 99.8 2.9E-18 9.9E-23 180.8 17.8 205 198-411 20-233 (285)
54 2ft3_A Biglycan; proteoglycan, 99.8 3.8E-18 1.3E-22 184.2 18.0 290 211-569 34-331 (332)
55 3zyi_A Leucine-rich repeat-con 99.8 1.2E-17 4E-22 188.7 22.0 173 211-394 55-231 (452)
56 3zyj_A Leucine-rich repeat-con 99.8 1.7E-17 5.7E-22 186.7 21.8 173 211-394 44-220 (440)
57 1z7x_W Ribonuclease inhibitor; 99.8 2E-19 7E-24 204.4 4.1 157 232-393 3-182 (461)
58 1ogq_A PGIP-2, polygalacturona 99.8 2.4E-18 8.4E-23 183.5 11.9 152 232-394 50-210 (313)
59 2z66_A Variable lymphocyte rec 99.7 1.1E-17 3.9E-22 178.3 15.0 173 214-395 11-189 (306)
60 2z80_A TOLL-like receptor 2, v 99.7 8E-18 2.7E-22 183.5 14.0 191 198-397 40-238 (353)
61 3g06_A SSPH2 (leucine-rich rep 99.7 1.1E-16 3.7E-21 184.9 24.0 113 233-362 41-153 (622)
62 3g06_A SSPH2 (leucine-rich rep 99.7 1.8E-16 6.1E-21 183.1 24.9 258 210-571 40-297 (622)
63 3zyj_A Leucine-rich repeat-con 99.7 5.1E-17 1.7E-21 182.7 16.9 189 197-396 51-246 (440)
64 3zyi_A Leucine-rich repeat-con 99.7 6.2E-17 2.1E-21 182.7 17.2 189 197-396 62-257 (452)
65 2o6q_A Variable lymphocyte rec 99.7 2.6E-16 8.9E-21 164.1 19.4 191 211-411 17-213 (270)
66 1ozn_A Reticulon 4 receptor; N 99.7 2E-16 6.9E-21 166.6 18.2 175 212-396 13-192 (285)
67 3sfz_A APAF-1, apoptotic pepti 99.7 3.1E-17 1.1E-21 210.8 13.6 171 4-190 274-452 (1249)
68 2o6q_A Variable lymphocyte rec 99.7 5.8E-16 2E-20 161.4 20.0 188 198-394 25-218 (270)
69 1vt4_I APAF-1 related killer D 99.7 2.7E-17 9.4E-22 190.6 9.9 143 8-183 285-436 (1221)
70 2z66_A Variable lymphocyte rec 99.7 3.3E-16 1.1E-20 167.0 17.5 227 198-434 16-259 (306)
71 1p9a_G Platelet glycoprotein I 99.7 5.9E-16 2E-20 162.7 18.5 192 209-411 9-203 (290)
72 3o53_A Protein LRIM1, AGAP0063 99.7 1.7E-17 5.9E-22 177.5 6.6 150 230-394 32-182 (317)
73 2xwt_C Thyrotropin receptor; s 99.7 1.9E-16 6.4E-21 162.0 13.4 200 201-411 23-234 (239)
74 1h6u_A Internalin H; cell adhe 99.7 9.9E-16 3.4E-20 162.8 18.7 188 209-413 40-227 (308)
75 2z62_A TOLL-like receptor 4, v 99.7 4.5E-16 1.5E-20 163.1 15.5 203 199-411 17-232 (276)
76 1z7x_W Ribonuclease inhibitor; 99.6 3.2E-17 1.1E-21 186.3 4.0 331 208-569 26-409 (461)
77 1wwl_A Monocyte differentiatio 99.6 8E-17 2.7E-21 171.9 6.6 160 231-397 94-269 (312)
78 1p9a_G Platelet glycoprotein I 99.6 2.1E-15 7.3E-20 158.4 17.3 184 199-394 20-208 (290)
79 3m19_A Variable lymphocyte rec 99.6 3.2E-15 1.1E-19 154.0 18.2 175 211-395 15-193 (251)
80 2z62_A TOLL-like receptor 4, v 99.6 2.8E-15 9.6E-20 157.0 17.6 177 213-397 10-193 (276)
81 3rfs_A Internalin B, repeat mo 99.6 8.2E-15 2.8E-19 152.8 19.1 177 207-394 38-218 (272)
82 1h6t_A Internalin B; cell adhe 99.6 4.7E-15 1.6E-19 156.0 16.2 173 208-397 44-216 (291)
83 3o53_A Protein LRIM1, AGAP0063 99.6 1.6E-15 5.5E-20 162.1 12.0 188 208-413 32-224 (317)
84 1wwl_A Monocyte differentiatio 99.6 3.4E-16 1.2E-20 167.0 6.6 152 231-393 42-213 (312)
85 2xwt_C Thyrotropin receptor; s 99.6 2.7E-15 9.4E-20 153.3 13.1 163 222-396 23-195 (239)
86 1h6u_A Internalin H; cell adhe 99.6 9.4E-15 3.2E-19 155.2 17.6 175 207-398 60-234 (308)
87 3m19_A Variable lymphocyte rec 99.6 1.2E-14 4E-19 149.7 16.8 164 198-363 23-192 (251)
88 3oja_A Leucine-rich immune mol 99.6 4.1E-15 1.4E-19 168.5 13.7 149 231-394 33-182 (487)
89 3rfs_A Internalin B, repeat mo 99.6 5.2E-15 1.8E-19 154.3 11.9 188 213-412 22-214 (272)
90 3oja_A Leucine-rich immune mol 99.6 9.4E-15 3.2E-19 165.5 13.4 187 209-413 33-224 (487)
91 1h6t_A Internalin B; cell adhe 99.6 9.7E-15 3.3E-19 153.6 12.2 181 216-413 30-210 (291)
92 3e6j_A Variable lymphocyte rec 99.5 6E-14 2.1E-18 141.8 16.4 149 212-363 21-172 (229)
93 2v70_A SLIT-2, SLIT homolog 2 99.5 4.2E-14 1.5E-18 141.8 15.0 149 213-363 14-166 (220)
94 1z6t_A APAF-1, apoptotic prote 99.5 1.2E-14 4.2E-19 169.9 12.0 164 8-187 276-449 (591)
95 1m9s_A Internalin B; cell inva 99.5 3.7E-14 1.3E-18 163.7 15.2 173 208-397 41-213 (605)
96 4ay9_X Follicle-stimulating ho 99.5 3.5E-14 1.2E-18 154.0 14.1 146 215-362 14-166 (350)
97 2v9t_B SLIT homolog 2 protein 99.5 7.2E-14 2.4E-18 140.2 15.1 148 213-363 14-165 (220)
98 4ay9_X Follicle-stimulating ho 99.5 7.2E-14 2.5E-18 151.5 16.0 237 235-567 12-255 (350)
99 4glp_A Monocyte differentiatio 99.5 1.4E-14 4.7E-19 154.4 9.7 162 231-397 90-267 (310)
100 2ast_B S-phase kinase-associat 99.5 1.3E-14 4.6E-19 156.9 8.8 103 257-360 70-178 (336)
101 4ezg_A Putative uncharacterize 99.5 7.9E-14 2.7E-18 137.4 13.2 148 208-362 42-193 (197)
102 1xeu_A Internalin C; cellular 99.5 2.2E-14 7.5E-19 148.3 9.4 171 209-397 18-188 (263)
103 4ezg_A Putative uncharacterize 99.5 7E-14 2.4E-18 137.8 12.4 150 230-394 42-194 (197)
104 4glp_A Monocyte differentiatio 99.5 1.2E-13 4.1E-18 147.1 13.2 191 209-411 90-302 (310)
105 1m9s_A Internalin B; cell inva 99.5 4.9E-14 1.7E-18 162.6 10.6 184 212-412 23-206 (605)
106 2o6s_A Variable lymphocyte rec 99.5 1.3E-13 4.5E-18 137.4 11.7 164 213-393 10-177 (208)
107 2o6s_A Variable lymphocyte rec 99.5 5.6E-13 1.9E-17 132.8 16.3 128 257-392 28-159 (208)
108 2xot_A Amphoterin-induced prot 99.5 1.5E-13 5.1E-18 149.6 12.2 172 213-394 21-202 (361)
109 1xeu_A Internalin C; cellular 99.5 2E-13 7E-18 141.0 12.1 147 208-363 39-185 (263)
110 2xot_A Amphoterin-induced prot 99.5 3.1E-13 1.1E-17 147.1 13.7 159 201-361 30-200 (361)
111 2ast_B S-phase kinase-associat 99.4 6.9E-14 2.4E-18 151.3 7.6 174 210-392 70-258 (336)
112 2ell_A Acidic leucine-rich nuc 99.4 6.7E-13 2.3E-17 127.1 13.0 139 255-398 22-164 (168)
113 3cvr_A Invasion plasmid antige 99.4 1.4E-12 4.6E-17 148.7 17.7 178 210-411 59-238 (571)
114 2v9t_B SLIT homolog 2 protein 99.4 1.1E-12 3.8E-17 131.5 14.4 147 235-393 14-164 (220)
115 3cvr_A Invasion plasmid antige 99.4 1.4E-12 4.7E-17 148.7 16.4 168 200-395 70-244 (571)
116 2v70_A SLIT-2, SLIT homolog 2 99.4 1.5E-12 5.3E-17 130.4 14.5 148 234-393 13-165 (220)
117 2ca6_A RAN GTPase-activating p 99.4 9.9E-14 3.4E-18 153.0 6.3 180 209-392 31-255 (386)
118 3e6j_A Variable lymphocyte rec 99.4 1.5E-12 5.1E-17 131.5 13.8 139 198-337 28-171 (229)
119 3goz_A Leucine-rich repeat-con 99.4 2.9E-13 1E-17 147.6 8.3 182 208-395 20-239 (362)
120 2ca6_A RAN GTPase-activating p 99.4 1.6E-13 5.5E-18 151.3 3.5 114 446-570 186-315 (386)
121 2je0_A Acidic leucine-rich nuc 99.4 1.6E-12 5.4E-17 121.6 9.5 105 257-362 17-125 (149)
122 2je0_A Acidic leucine-rich nuc 99.4 1.3E-12 4.6E-17 122.1 8.8 124 232-358 17-148 (149)
123 2ell_A Acidic leucine-rich nuc 99.3 2.3E-12 7.7E-17 123.4 10.4 126 233-361 25-158 (168)
124 1dce_A Protein (RAB geranylger 99.3 2.1E-14 7.3E-19 164.7 -5.8 189 209-408 348-565 (567)
125 1w8a_A SLIT protein; signaling 99.3 8.7E-12 3E-16 122.0 12.0 104 258-362 30-138 (192)
126 2wfh_A SLIT homolog 2 protein 99.3 1.4E-11 4.6E-16 120.5 13.1 123 236-363 14-139 (193)
127 1a9n_A U2A', U2A'; complex (nu 99.3 6E-12 2.1E-16 121.3 10.3 134 253-392 15-151 (176)
128 1w8a_A SLIT protein; signaling 99.3 1.2E-11 4.2E-16 120.9 11.8 123 213-336 11-137 (192)
129 4b8c_D Glucose-repressible alc 99.3 5.7E-12 2E-16 149.4 9.7 150 210-363 173-329 (727)
130 3goz_A Leucine-rich repeat-con 99.3 1.6E-12 5.5E-17 141.7 4.3 126 234-362 24-179 (362)
131 2wfh_A SLIT homolog 2 protein 99.3 3.8E-11 1.3E-15 117.3 13.2 121 213-336 13-137 (193)
132 1a9n_A U2A', U2A'; complex (nu 99.2 1.3E-11 4.4E-16 119.0 9.1 128 230-361 17-151 (176)
133 2o6r_A Variable lymphocyte rec 99.2 8.5E-11 2.9E-15 113.4 13.1 105 257-362 28-136 (177)
134 1ds9_A Outer arm dynein; leuci 99.2 1.1E-12 3.7E-17 129.4 -2.5 108 253-363 44-153 (198)
135 1dce_A Protein (RAB geranylger 99.2 1E-10 3.5E-15 134.2 12.4 123 258-388 442-567 (567)
136 4b8c_D Glucose-repressible alc 99.1 4.5E-11 1.5E-15 141.8 8.5 140 220-362 211-353 (727)
137 2o6r_A Variable lymphocyte rec 99.1 4E-10 1.4E-14 108.6 13.6 127 259-395 9-138 (177)
138 1ds9_A Outer arm dynein; leuci 99.1 2.7E-12 9.1E-17 126.5 -3.4 142 211-356 24-180 (198)
139 2r9u_A Variable lymphocyte rec 99.1 4.5E-10 1.5E-14 107.5 11.3 100 260-362 15-117 (174)
140 3g39_A Variable lymphocyte rec 99.1 5.1E-10 1.8E-14 106.7 11.2 102 259-363 11-115 (170)
141 2r9u_A Variable lymphocyte rec 99.0 1.7E-09 5.7E-14 103.5 10.6 103 235-342 15-121 (174)
142 3g39_A Variable lymphocyte rec 98.9 4.8E-09 1.6E-13 100.0 11.1 98 235-336 12-113 (170)
143 3sb4_A Hypothetical leucine ri 98.9 5.8E-09 2E-13 111.7 11.4 188 209-408 48-326 (329)
144 2ifg_A High affinity nerve gro 98.7 5.1E-08 1.8E-12 105.3 10.0 98 262-362 13-115 (347)
145 3un9_A NLR family member X1; l 98.6 2.8E-09 9.5E-14 115.4 -1.2 156 207-363 69-252 (372)
146 2ifg_A High affinity nerve gro 98.6 1.1E-07 3.6E-12 102.9 9.8 99 236-336 12-114 (347)
147 3sb4_A Hypothetical leucine ri 98.5 3E-07 1E-11 98.3 10.5 167 209-387 100-327 (329)
148 4fdw_A Leucine rich hypothetic 98.5 4.2E-06 1.4E-10 91.3 19.3 121 232-360 113-236 (401)
149 3un9_A NLR family member X1; l 98.4 1.5E-08 5.1E-13 109.7 -1.7 161 231-395 71-253 (372)
150 4fdw_A Leucine rich hypothetic 98.3 6.3E-06 2.1E-10 90.0 15.6 164 211-389 158-331 (401)
151 3e4g_A ATP synthase subunit S, 98.3 2.3E-07 8E-12 86.5 2.4 40 807-848 115-154 (176)
152 3e4g_A ATP synthase subunit S, 98.2 5.3E-07 1.8E-11 84.1 3.9 39 649-691 62-100 (176)
153 4fs7_A Uncharacterized protein 98.2 8.8E-05 3E-09 81.2 20.2 109 246-360 60-172 (394)
154 2ra8_A Uncharacterized protein 98.0 5.3E-06 1.8E-10 88.8 5.7 159 230-393 137-319 (362)
155 4fs7_A Uncharacterized protein 97.9 9.4E-05 3.2E-09 81.0 15.0 57 230-289 69-126 (394)
156 2ra8_A Uncharacterized protein 97.8 1.4E-05 4.8E-10 85.5 4.6 79 254-333 136-227 (362)
157 1io0_A Tropomodulin; LRR prote 97.7 1.6E-05 5.6E-10 76.3 4.5 110 252-362 31-163 (185)
158 3rw6_A Nuclear RNA export fact 97.6 8.3E-06 2.8E-10 82.4 -0.2 62 254-315 167-233 (267)
159 3rw6_A Nuclear RNA export fact 97.6 5E-05 1.7E-09 76.7 5.4 102 254-356 138-257 (267)
160 1io0_A Tropomodulin; LRR prote 97.5 4E-05 1.4E-09 73.6 3.6 105 231-336 35-162 (185)
161 4gt6_A Cell surface protein; l 97.5 0.0078 2.7E-07 65.5 21.8 108 248-359 54-169 (394)
162 4gt6_A Cell surface protein; l 97.3 0.014 4.6E-07 63.6 21.5 143 233-390 65-214 (394)
163 4h09_A Hypothetical leucine ri 95.0 0.13 4.6E-06 55.3 12.0 102 253-358 213-318 (379)
164 3rfe_A Platelet glycoprotein I 93.9 0.089 3E-06 46.4 6.1 33 258-290 32-65 (130)
165 4h09_A Hypothetical leucine ri 93.8 0.26 8.9E-06 53.0 11.1 125 230-360 215-343 (379)
166 3rfe_A Platelet glycoprotein I 93.6 0.11 3.6E-06 45.9 6.1 55 306-363 12-68 (130)
167 1pgv_A TMD-1, tropomodulin TMD 93.0 0.11 3.7E-06 49.3 5.3 82 253-334 37-135 (197)
168 1pgv_A TMD-1, tropomodulin TMD 90.1 0.2 6.7E-06 47.5 3.8 82 253-334 66-166 (197)
169 1w5s_A Origin recognition comp 89.6 1.3 4.5E-05 47.9 10.7 151 10-179 210-387 (412)
170 2fna_A Conserved hypothetical 75.5 2 6.8E-05 45.3 4.4 146 8-182 202-355 (357)
171 2qen_A Walker-type ATPase; unk 69.1 6.3 0.00022 41.2 6.4 149 8-182 196-347 (350)
172 1hqc_A RUVB; extended AAA-ATPa 63.7 11 0.00038 38.8 6.9 70 6-76 159-237 (324)
173 2qby_B CDC6 homolog 3, cell di 49.2 93 0.0032 32.5 11.4 138 8-166 190-338 (384)
174 1njg_A DNA polymerase III subu 45.9 23 0.00079 34.1 5.5 54 8-62 178-231 (250)
175 2v1u_A Cell division control p 43.3 68 0.0023 33.6 9.1 136 8-166 194-350 (387)
176 1v54_E Cytochrome C oxidase po 26.0 84 0.0029 25.6 4.4 49 30-78 40-90 (109)
177 1fnn_A CDC6P, cell division co 24.8 2.5E+02 0.0085 29.1 9.8 138 9-166 187-350 (389)
No 1
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=8.7e-36 Score=359.69 Aligned_cols=624 Identities=13% Similarity=0.009 Sum_probs=358.0
Q ss_pred cCCCcEEEccCCCCccCCccc-CCCccceeeecCCcccccCCh--hhhcCCCCccEEEecCCcCc-ccCccc-cCCCCCC
Q 002313 209 DEAPTAISIPFRGIYELPERL-GFLKLKLFLFFTENLSLQIPD--PFFEGMTELRVLDLTGFRFH-SLPSSL-GCLINLR 283 (937)
Q Consensus 209 ~~~l~~l~l~~~~~~~l~~~~-~~~~L~~L~l~~~~~~~~~~~--~~~~~l~~Lr~L~L~~~~~~-~lp~~i-~~l~~Lr 283 (937)
++.++.++.+.+.+..++..+ .+++|++|++++|.+.+.+|. . ++++++|++|++++|.+. ..|..+ .++++|+
T Consensus 76 L~~L~~l~~~~~~~~~l~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~-l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~ 154 (768)
T 3rgz_A 76 LTGLESLFLSNSHINGSVSGFKCSASLTSLDLSRNSLSGPVTTLTS-LGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLE 154 (768)
T ss_dssp CTTCCEEECTTSCEEECCCCCCCCTTCCEEECCSSEEEEEGGGGGG-GGGCTTCCEEECCSSEEECCSSCCSCCCCTTCS
T ss_pred cCcccccCCcCCCcCCCchhhccCCCCCEEECCCCcCCCcCCChHH-HhCCCCCCEEECcCCccCCcCCHHHhccCCCCC
Confidence 456677777766665555555 577788888887777666665 4 577788888888887765 345444 6777888
Q ss_pred EEEccCCcccCc--cc---ccCCCCCcEEecccCcCcccCcccccCccCCEEEecCCCCCcccChhhhcCCCCCcEEEcC
Q 002313 284 TLSLENCLVVDV--AI---IGDLKKLEILSLKHSSIEQLPREIGQLTCLKLLDLSNCSKLKEIRPNVISNLTRLEELYMG 358 (937)
Q Consensus 284 ~L~L~~~~~~~l--~~---i~~L~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~l~~L~~L~~L~l~ 358 (937)
+|++++|.+... .. ++++++|++|++++|.+....+ ++++++|++|++++|. +...++. ++++++|++|+++
T Consensus 155 ~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~Ls~n~-l~~~~~~-l~~l~~L~~L~Ls 231 (768)
T 3rgz_A 155 VLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVD-VSRCVNLEFLDVSSNN-FSTGIPF-LGDCSALQHLDIS 231 (768)
T ss_dssp EEECCSSCCEEETHHHHHHTTCCTTCCEEECCSSEEESCCB-CTTCTTCCEEECCSSC-CCSCCCB-CTTCCSCCEEECC
T ss_pred EEECCCCccCCcCChhhhhhccCCCCCEEECCCCcccccCC-cccCCcCCEEECcCCc-CCCCCcc-cccCCCCCEEECc
Confidence 888888777644 22 6777788888888777665443 3777788888887755 3333333 7777888888887
Q ss_pred CCcccceecCCCCCChhhhcCCCCCCeEEeecCCCCCCCccccccccceeEEEecC----cCCCCCCc-CCcceEEEecc
Q 002313 359 NSFTQWKVEGQSNASLGELKQLSRLTTLEVHIPDAQVMPQDLVFVELERFRICIGD----VWSWSDGY-ETSKTLKLQLN 433 (937)
Q Consensus 359 ~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~l~l~~~~----~~~~~~~~-~~~~~l~l~~~ 433 (937)
+|.+. ...+..+..+++|+.|+++++...........++|+.|.+..+. .+.+.... ..++.+++..+
T Consensus 232 ~n~l~-------~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n 304 (768)
T 3rgz_A 232 GNKLS-------GDFSRAISTCTELKLLNISSNQFVGPIPPLPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGN 304 (768)
T ss_dssp SSCCC-------SCHHHHTTTCSSCCEEECCSSCCEESCCCCCCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSS
T ss_pred CCcCC-------CcccHHHhcCCCCCEEECCCCcccCccCccccCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCC
Confidence 77554 23456677777788888877766543333356677777665432 23333332 56777777665
Q ss_pred cccchhhhHHHHhhcccccccccccChhhhhhc-ccchhhcccCcEEEeecCCceEEEEccCCcccccc-ccceeccccc
Q 002313 434 NSTYLGYGMKMLLKRTEDLHLDELAGFKNVVHE-LDDEEGFARLRHLHVHNGPEILHILNSDGRVGTFP-LLESLFLHNL 511 (937)
Q Consensus 434 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~-l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~p-~L~~L~l~~~ 511 (937)
............+++|+.|++.++.....++.. +.. +++|++|+++++.-...+ +.....++ +|++|+++++
T Consensus 305 ~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~---l~~L~~L~Ls~n~l~~~~---p~~l~~l~~~L~~L~Ls~N 378 (768)
T 3rgz_A 305 HFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLK---MRGLKVLDLSFNEFSGEL---PESLTNLSASLLTLDLSSN 378 (768)
T ss_dssp EEEECCCGGGGGCTTCCEEECCSSEEEEECCHHHHTT---CTTCCEEECCSSEEEECC---CTTHHHHTTTCSEEECCSS
T ss_pred cCCCccchHHhcCCCccEEECCCCcccCcCCHHHHhc---CCCCCEEeCcCCccCccc---cHHHHhhhcCCcEEEccCC
Confidence 443333333345677888888775443222222 333 778888888877432222 22223444 7888888876
Q ss_pred ccccccccccccCCCCCccCCCccEEEEecCCCcccccchhHHHhhccccEEEEcccccchhhhccccccccccCCcccc
Q 002313 512 INLEKVCDGKVRLNEDDKSFSNLRIIKVEGCHRVKHLFPFSLVKNLLQLQKVKVTDCTNLKLIVGKESENSAHKNGSISG 591 (937)
Q Consensus 512 ~~l~~~~~~~~~~~~~~~~l~~L~~L~l~~C~~L~~l~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~i~~ 591 (937)
. +... .+.......+++|++|++.+|.-...+| ..+..+++|++|++++|.--..++. ..
T Consensus 379 ~-l~~~----~~~~~~~~~~~~L~~L~L~~n~l~~~~p--~~l~~l~~L~~L~Ls~N~l~~~~p~-------------~l 438 (768)
T 3rgz_A 379 N-FSGP----ILPNLCQNPKNTLQELYLQNNGFTGKIP--PTLSNCSELVSLHLSFNYLSGTIPS-------------SL 438 (768)
T ss_dssp E-EEEE----CCTTTTCSTTCCCCEEECCSSEEEEECC--GGGGGCTTCCEEECCSSEEESCCCG-------------GG
T ss_pred C-cCCC----cChhhhhcccCCccEEECCCCccccccC--HHHhcCCCCCEEECcCCcccCcccH-------------HH
Confidence 3 2211 1100011226778888888865333444 3466788888888888653322221 11
Q ss_pred ccccccceeeccCCCCccccccCCCCCcccCCCCCCccccCCCCCccccccccccCCCcceeeccCcccceeccCCcccc
Q 002313 592 VYFRKLHFLKLQHLPQLTSSGFDLETPTNTQGSNPGIIAEGDPKDFTSLFNERVVFPSLKKLKLSSINVEKIWLNSFSAI 671 (937)
Q Consensus 592 ~~~~~L~~L~l~~c~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~l~~~~~~~~~~~ 671 (937)
..+++|+.|++.++..-..++.. ...+++|+.|++++|.++......
T Consensus 439 ~~l~~L~~L~L~~n~l~~~~p~~-----------------------------~~~l~~L~~L~L~~N~l~~~~p~~---- 485 (768)
T 3rgz_A 439 GSLSKLRDLKLWLNMLEGEIPQE-----------------------------LMYVKTLETLILDFNDLTGEIPSG---- 485 (768)
T ss_dssp GGCTTCCEEECCSSCCCSCCCGG-----------------------------GGGCTTCCEEECCSSCCCSCCCGG----
T ss_pred hcCCCCCEEECCCCcccCcCCHH-----------------------------HcCCCCceEEEecCCcccCcCCHH----
Confidence 26778888888877543333322 234677888888888666332111
Q ss_pred cccCCCccEEEEeccCCccccchHHHHhhccccceeeeccccchHHHhccCCCCCCCcccccccccceeeeccCcccccc
Q 002313 672 ESWGKNLTKLTVEKCGRLKFLFSSSMVNGLEQLQQLDISHCKSMNEVINTRVGRDDNMIEMVFPKLVSLQLSHLPKLTRF 751 (937)
Q Consensus 672 ~~~l~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~~~~~L~~L~i~~c~~l~~~ 751 (937)
...+++|+.|++++|.....++ ..+..+++|+.|++++|.-...++.. ...+++|+.|++++++-...+
T Consensus 486 l~~l~~L~~L~L~~N~l~~~~p--~~~~~l~~L~~L~L~~N~l~~~~p~~---------l~~l~~L~~L~Ls~N~l~g~i 554 (768)
T 3rgz_A 486 LSNCTNLNWISLSNNRLTGEIP--KWIGRLENLAILKLSNNSFSGNIPAE---------LGDCRSLIWLDLNTNLFNGTI 554 (768)
T ss_dssp GGGCTTCCEEECCSSCCCSCCC--GGGGGCTTCCEEECCSSCCEEECCGG---------GGGCTTCCEEECCSSEEESBC
T ss_pred HhcCCCCCEEEccCCccCCcCC--hHHhcCCCCCEEECCCCcccCcCCHH---------HcCCCCCCEEECCCCccCCcC
Confidence 2356778888888775443332 24667778888888777543333321 224677788888777544444
Q ss_pred cccCCCCcccccceeeccCCCceeeccc------------------ccccc---cccc--ccCccCcCc-cccccccCCC
Q 002313 752 GIGDSVEFPSLCQLQIACCPNLKIFICS------------------CTEEM---SSEK--NIHTTQTQP-LFDEKVGLPK 807 (937)
Q Consensus 752 ~~~~~~~l~~L~~L~i~~C~~l~~~~~~------------------~~~~~---~~~~--~~~~~~~~~-l~~~~~~l~~ 807 (937)
|...+ ....+..+.+.....+...... ..... .... ......+.+ +......+++
T Consensus 555 p~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~ 633 (768)
T 3rgz_A 555 PAAMF-KQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGS 633 (768)
T ss_dssp CGGGG-TTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBC
T ss_pred ChHHh-cccchhhhhccccccccccccccccccccccccccccccccchhhhccccccccccccceecccCchhhhcccc
Confidence 44322 1222222222211111100000 00000 0000 000000000 0112245678
Q ss_pred ccEEEecCCCCcceeccCCCCcccCCCCcEEEEEcCCCcccccchhHHHhcCCCcEEeecccccceeeecccCcccccCC
Q 002313 808 LEVLRIDGMDNLRKIWHHQLALDSFTKLKDLDVEYCDQLLSIFPSNMLRRLERLEHLAVSECGSIEEIVEISSNCTVETA 887 (937)
Q Consensus 808 L~~L~l~~c~~l~~l~~~~~~~~~l~~L~~L~i~~C~~L~~~~p~~~l~~l~~L~~L~i~~C~~l~~l~~~~~~~~~~~~ 887 (937)
|+.|+++++.--..+|.. ++.+++|+.|+++++. ++..+|.. ++.+++|+.|+++++.--..+|..
T Consensus 634 L~~LdLs~N~l~g~ip~~---l~~l~~L~~L~Ls~N~-l~g~ip~~-l~~L~~L~~LdLs~N~l~g~ip~~--------- 699 (768)
T 3rgz_A 634 MMFLDMSYNMLSGYIPKE---IGSMPYLFILNLGHND-ISGSIPDE-VGDLRGLNILDLSSNKLDGRIPQA--------- 699 (768)
T ss_dssp CCEEECCSSCCBSCCCGG---GGGCTTCCEEECCSSC-CCSCCCGG-GGGCTTCCEEECCSSCCEECCCGG---------
T ss_pred ccEEECcCCcccccCCHH---HhccccCCEEeCcCCc-cCCCCChH-HhCCCCCCEEECCCCcccCcCChH---------
Confidence 888888887322244432 4567888888887764 44335653 578888888888886544345431
Q ss_pred CceeecccCcccccccccccccCCCCCcccCCccCeEEEecCCCc
Q 002313 888 PGVVFRQLTSLKLHWLPRLKSFCPGIHISGWLVLKNLDVFECDKF 932 (937)
Q Consensus 888 ~~~~~~sL~~L~i~~c~~L~~l~~~~~~~~~~~L~~L~i~~C~~l 932 (937)
...+++|++|++++++--..+|.+.+ +.++....+.|+|.|
T Consensus 700 -l~~l~~L~~L~ls~N~l~g~iP~~~~---~~~~~~~~~~gN~~L 740 (768)
T 3rgz_A 700 -MSALTMLTEIDLSNNNLSGPIPEMGQ---FETFPPAKFLNNPGL 740 (768)
T ss_dssp -GGGCCCCSEEECCSSEEEEECCSSSS---GGGSCGGGGCSCTEE
T ss_pred -HhCCCCCCEEECcCCcccccCCCchh---hccCCHHHhcCCchh
Confidence 22467788888888764455565543 345555556666654
No 2
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=1.8e-34 Score=345.75 Aligned_cols=583 Identities=15% Similarity=0.140 Sum_probs=257.7
Q ss_pred chhhhhhccCCCcEEEccCCCCccCCcc-c-CCCccceeeecCCcccccCChhhhcCCCCccEEEecCCcCcccCc-ccc
Q 002313 201 LKEELDKIDEAPTAISIPFRGIYELPER-L-GFLKLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHSLPS-SLG 277 (937)
Q Consensus 201 ~~~~~~~~~~~l~~l~l~~~~~~~l~~~-~-~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~lp~-~i~ 277 (937)
+..+|...+.++++++++++.+..++.. + .+++|++|++++|......| ..|+++++|++|++++|.+..+|. .|+
T Consensus 16 L~~ip~~~~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~~~l~~L~~L~L~~n~l~~l~~~~~~ 94 (680)
T 1ziw_A 16 LTQVPDDLPTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEP-ELCQKLPMLKVLNLQHNELSQLSDKTFA 94 (680)
T ss_dssp CSSCCSCSCTTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCT-THHHHCTTCCEEECCSSCCCCCCTTTTT
T ss_pred ccccccccCCCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCH-HHHhcccCcCEEECCCCccCccChhhhc
Confidence 3444444445555666655555555443 2 45555555555554433222 334555555555555555555544 355
Q ss_pred CCCCCCEEEccCCcccCc--ccccCCCCCcEEecccCcCcccC-cccccCccCCEEEecCCCCCcccChhhhc--CCCCC
Q 002313 278 CLINLRTLSLENCLVVDV--AIIGDLKKLEILSLKHSSIEQLP-REIGQLTCLKLLDLSNCSKLKEIRPNVIS--NLTRL 352 (937)
Q Consensus 278 ~l~~Lr~L~L~~~~~~~l--~~i~~L~~L~~L~L~~~~l~~lp-~~i~~L~~L~~L~l~~~~~l~~lp~~~l~--~L~~L 352 (937)
++++|++|++++|.+..+ ..++++++|++|++++|.+...+ ..++++++|++|++++|. +..+++..++ .+++|
T Consensus 95 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~~~~~~L 173 (680)
T 1ziw_A 95 FCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNK-IQALKSEELDIFANSSL 173 (680)
T ss_dssp TCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSC-CCCBCHHHHGGGTTCEE
T ss_pred cCCCCCEEECCCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCc-ccccCHHHhhccccccc
Confidence 555555555555555544 34555555555555555554432 345555555555555532 4444443232 33555
Q ss_pred cEEEcCCCcccceecCCCCCChhhhcCCCCCCeEEeecCCCCCCC-----ccccccccceeEEEecCcCCCCCCcCCcce
Q 002313 353 EELYMGNSFTQWKVEGQSNASLGELKQLSRLTTLEVHIPDAQVMP-----QDLVFVELERFRICIGDVWSWSDGYETSKT 427 (937)
Q Consensus 353 ~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~-----~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~ 427 (937)
++|++++|.+. ......+..+.+|+.+++..+...... ......+|+.+.+
T Consensus 174 ~~L~L~~n~l~-------~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L----------------- 229 (680)
T 1ziw_A 174 KKLELSSNQIK-------EFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSL----------------- 229 (680)
T ss_dssp SEEECTTCCCC-------CBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEEC-----------------
T ss_pred cEEECCCCccc-------ccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEc-----------------
Confidence 55555555432 122233444445555555443321000 0001122222222
Q ss_pred EEEecccccchhhhHHHHh--hcccccccccccChhhhhhcccchhhcccCcEEEeecCCceEEEEccCCccccccccce
Q 002313 428 LKLQLNNSTYLGYGMKMLL--KRTEDLHLDELAGFKNVVHELDDEEGFARLRHLHVHNGPEILHILNSDGRVGTFPLLES 505 (937)
Q Consensus 428 l~l~~~~~~~~~~~~~~~~--~~L~~L~l~~~~~~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~p~L~~ 505 (937)
..+............+ ++|+.|+++++.........+.. +++|++|+++++.-.. +. +.....+++|+.
T Consensus 230 ---~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~~~~---l~~L~~L~L~~n~l~~-~~--~~~~~~l~~L~~ 300 (680)
T 1ziw_A 230 ---SNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAW---LPQLEYFFLEYNNIQH-LF--SHSLHGLFNVRY 300 (680)
T ss_dssp ---TTSCCCEECTTTTGGGGGSCCCEEECTTSCCCEECTTTTTT---CTTCCEEECCSCCBSE-EC--TTTTTTCTTCCE
T ss_pred ---cCCcccccChhHhhccCcCCCCEEECCCCCcCccCcccccC---cccccEeeCCCCccCc-cC--hhhhcCCCCccE
Confidence 1111111000001112 22555555544332222222222 5555555555542221 11 112234555555
Q ss_pred ecccccccccccccccccC--CCCCccCCCccEEEEecCCCcccccchhHHHhhccccEEEEccccc-chhhhccccccc
Q 002313 506 LFLHNLINLEKVCDGKVRL--NEDDKSFSNLRIIKVEGCHRVKHLFPFSLVKNLLQLQKVKVTDCTN-LKLIVGKESENS 582 (937)
Q Consensus 506 L~l~~~~~l~~~~~~~~~~--~~~~~~l~~L~~L~l~~C~~L~~l~~~~~~~~l~~L~~L~i~~c~~-l~~~~~~~~~~~ 582 (937)
|++.++..-..+....+|. ......+++|++|+++++ ++..+++ ..+..+++|++|++++|.. +..+...
T Consensus 301 L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n-~l~~~~~-~~~~~l~~L~~L~Ls~n~~~~~~l~~~----- 373 (680)
T 1ziw_A 301 LNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDN-DIPGIKS-NMFTGLINLKYLSLSNSFTSLRTLTNE----- 373 (680)
T ss_dssp EECTTCBCCC------CCEECTTTTTTCTTCCEEECCSC-CBCCCCT-TTTTTCTTCCEEECTTCBSCCCEECTT-----
T ss_pred EeccchhhhcccccccccccChhhcccCCCCCEEECCCC-ccCCCCh-hHhccccCCcEEECCCCchhhhhcchh-----
Confidence 5555421110000000000 001234455555555553 2343332 2334455555555555431 1111100
Q ss_pred cccCCccccccccccceeeccCCCCccccccCCCCCcccCCCCCCccccCCCCCccccccccccCCCcceeeccCcccce
Q 002313 583 AHKNGSISGVYFRKLHFLKLQHLPQLTSSGFDLETPTNTQGSNPGIIAEGDPKDFTSLFNERVVFPSLKKLKLSSINVEK 662 (937)
Q Consensus 583 ~~~~~~i~~~~~~~L~~L~l~~c~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~l~~ 662 (937)
.+.....++|+.|++.++.- ..+... ....+++|+.|++++|.+..
T Consensus 374 -----~f~~~~~~~L~~L~L~~n~l-~~~~~~----------------------------~~~~l~~L~~L~L~~N~l~~ 419 (680)
T 1ziw_A 374 -----TFVSLAHSPLHILNLTKNKI-SKIESD----------------------------AFSWLGHLEVLDLGLNEIGQ 419 (680)
T ss_dssp -----TTGGGTTSCCCEEECTTSCC-CEECTT----------------------------TTTTCTTCCEEECCSSCCEE
T ss_pred -----hhcccccCcCceEECCCCCC-CeEChh----------------------------hhhCCCCCCEEeCCCCcCcc
Confidence 00000123455555555431 111110 01235666666666665543
Q ss_pred -eccCCcccccccCCCccEEEEeccCCccccchHHHHhhccccceeeeccccc--hHHHhccCCCCCCCcccccccccce
Q 002313 663 -IWLNSFSAIESWGKNLTKLTVEKCGRLKFLFSSSMVNGLEQLQQLDISHCKS--MNEVINTRVGRDDNMIEMVFPKLVS 739 (937)
Q Consensus 663 -~~~~~~~~~~~~l~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~~--l~~~~~~~~~~~~~~~~~~~~~L~~ 739 (937)
++... ...+++|++|++++|. ++.+.+ ..+..+++|+.|+++++.- +..++. ....+++|+.
T Consensus 420 ~~~~~~----~~~l~~L~~L~Ls~n~-l~~~~~-~~~~~~~~L~~L~l~~n~l~~~~~~p~---------~~~~l~~L~~ 484 (680)
T 1ziw_A 420 ELTGQE----WRGLENIFEIYLSYNK-YLQLTR-NSFALVPSLQRLMLRRVALKNVDSSPS---------PFQPLRNLTI 484 (680)
T ss_dssp ECCSGG----GTTCTTCCEEECCSCS-EEECCT-TTTTTCTTCCEEECTTSCCBCTTCSSC---------TTTTCTTCCE
T ss_pred ccCccc----ccCcccccEEecCCCC-cceeCh-hhhhcCcccccchhccccccccccCCc---------ccccCCCCCE
Confidence 22111 2345666666666664 222211 2345566666666665431 111111 0123566666
Q ss_pred eeeccCcccccccccCCCCcccccceeeccCCCceeeccccccccccccccCccCcCccccccccCCCccEEEecCCCCc
Q 002313 740 LQLSHLPKLTRFGIGDSVEFPSLCQLQIACCPNLKIFICSCTEEMSSEKNIHTTQTQPLFDEKVGLPKLEVLRIDGMDNL 819 (937)
Q Consensus 740 L~i~~c~~l~~~~~~~~~~l~~L~~L~i~~C~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~L~~L~l~~c~~l 819 (937)
|+++++ .++.++...+..+++|+.|+++++.--...... ....... ....+++|+.|+++++ .+
T Consensus 485 L~Ls~N-~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~----------~~~~~~~----~~~~l~~L~~L~L~~N-~l 548 (680)
T 1ziw_A 485 LDLSNN-NIANINDDMLEGLEKLEILDLQHNNLARLWKHA----------NPGGPIY----FLKGLSHLHILNLESN-GF 548 (680)
T ss_dssp EECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTT----------STTSCCC----TTTTCTTCCEEECCSS-CC
T ss_pred EECCCC-CCCcCChhhhccccccCEEeCCCCCccccchhh----------ccCCcch----hhcCCCCCCEEECCCC-CC
Confidence 666654 355555555556666666666665321110000 0000000 0135567777777766 56
Q ss_pred ceeccCCCCcccCCCCcEEEEEcCCCcccccchhHHHhcCCCcEEeecccccceeeecccCcccccCCCce-eecccCcc
Q 002313 820 RKIWHHQLALDSFTKLKDLDVEYCDQLLSIFPSNMLRRLERLEHLAVSECGSIEEIVEISSNCTVETAPGV-VFRQLTSL 898 (937)
Q Consensus 820 ~~l~~~~~~~~~l~~L~~L~i~~C~~L~~~~p~~~l~~l~~L~~L~i~~C~~l~~l~~~~~~~~~~~~~~~-~~~sL~~L 898 (937)
+.++... +..+++|+.|+++++ +++. +|...+..+++|+.|+++++ .++.++... .. .+++|+.|
T Consensus 549 ~~i~~~~--~~~l~~L~~L~Ls~N-~l~~-l~~~~~~~l~~L~~L~L~~N-~l~~~~~~~---------~~~~~~~L~~l 614 (680)
T 1ziw_A 549 DEIPVEV--FKDLFELKIIDLGLN-NLNT-LPASVFNNQVSLKSLNLQKN-LITSVEKKV---------FGPAFRNLTEL 614 (680)
T ss_dssp CCCCTTT--TTTCTTCCEEECCSS-CCCC-CCTTTTTTCTTCCEEECTTS-CCCBCCHHH---------HHHHHTTCSEE
T ss_pred CCCCHHH--cccccCcceeECCCC-CCCc-CCHhHhCCCCCCCEEECCCC-cCCccChhH---------hcccccccCEE
Confidence 6555432 344667777777443 4555 45545566677777777764 454443210 00 25667777
Q ss_pred cccccc
Q 002313 899 KLHWLP 904 (937)
Q Consensus 899 ~i~~c~ 904 (937)
++.++|
T Consensus 615 ~l~~N~ 620 (680)
T 1ziw_A 615 DMRFNP 620 (680)
T ss_dssp ECTTCC
T ss_pred EccCCC
Confidence 776655
No 3
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=1.8e-35 Score=356.86 Aligned_cols=587 Identities=16% Similarity=0.049 Sum_probs=315.1
Q ss_pred CCCcEEEccCCCCcc----CCccc-CCCccceeeecCCcccccCChhhhcCCCCccEEEecCCcCc-ccCc--cccCCCC
Q 002313 210 EAPTAISIPFRGIYE----LPERL-GFLKLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFH-SLPS--SLGCLIN 281 (937)
Q Consensus 210 ~~l~~l~l~~~~~~~----l~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~-~lp~--~i~~l~~ 281 (937)
.+++.++++++.+.. +++.+ .+++|+.+++..+... .+|.. |+++++|++|+|++|.+. .+|. .++++++
T Consensus 50 ~~v~~L~L~~~~l~g~~~~l~~~l~~L~~L~~l~~~~~~~~-~l~~~-~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~ 127 (768)
T 3rgz_A 50 DKVTSIDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHIN-GSVSG-FKCSASLTSLDLSRNSLSGPVTTLTSLGSCSG 127 (768)
T ss_dssp TEEEEEECTTSCCCEEHHHHHHHTTTCTTCCEEECTTSCEE-ECCCC-CCCCTTCCEEECCSSEEEEEGGGGGGGGGCTT
T ss_pred CcEEEEECCCCCcCCccCccChhHhccCcccccCCcCCCcC-CCchh-hccCCCCCEEECCCCcCCCcCCChHHHhCCCC
Confidence 467888888887654 45444 5677777777666543 34444 588999999999999887 4677 8899999
Q ss_pred CCEEEccCCcccCc--cc-ccCCCCCcEEecccCcCcccCc-c---cccCccCCEEEecCCCCCcccChhhhcCCCCCcE
Q 002313 282 LRTLSLENCLVVDV--AI-IGDLKKLEILSLKHSSIEQLPR-E---IGQLTCLKLLDLSNCSKLKEIRPNVISNLTRLEE 354 (937)
Q Consensus 282 Lr~L~L~~~~~~~l--~~-i~~L~~L~~L~L~~~~l~~lp~-~---i~~L~~L~~L~l~~~~~l~~lp~~~l~~L~~L~~ 354 (937)
|++|++++|.+... .. ++++++|++|++++|.++..+. . ++++++|++|++++|. +....+ ++.+++|++
T Consensus 128 L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~--~~~l~~L~~ 204 (768)
T 3rgz_A 128 LKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNK-ISGDVD--VSRCVNLEF 204 (768)
T ss_dssp CCEEECCSSEEECCSSCCSCCCCTTCSEEECCSSCCEEETHHHHHHTTCCTTCCEEECCSSE-EESCCB--CTTCTTCCE
T ss_pred CCEEECcCCccCCcCCHHHhccCCCCCEEECCCCccCCcCChhhhhhccCCCCCEEECCCCc-ccccCC--cccCCcCCE
Confidence 99999999987643 33 3789999999999998876553 3 7888999999999865 444433 478899999
Q ss_pred EEcCCCcccceecCCCCCChhhhcCCCCCCeEEeecCCCCCC-Cccc-cccccceeEEEecCcCCCCCCcCCcceEEEec
Q 002313 355 LYMGNSFTQWKVEGQSNASLGELKQLSRLTTLEVHIPDAQVM-PQDL-VFVELERFRICIGDVWSWSDGYETSKTLKLQL 432 (937)
Q Consensus 355 L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~-~~~~-~~~~L~~l~l~~~~~~~~~~~~~~~~~l~l~~ 432 (937)
|++++|.+. + .+..+.++++|++|+++++.+... +..+ ..++|+.|.+..+......+..
T Consensus 205 L~Ls~n~l~----~----~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~---------- 266 (768)
T 3rgz_A 205 LDVSSNNFS----T----GIPFLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPL---------- 266 (768)
T ss_dssp EECCSSCCC----S----CCCBCTTCCSCCEEECCSSCCCSCHHHHTTTCSSCCEEECCSSCCEESCCCC----------
T ss_pred EECcCCcCC----C----CCcccccCCCCCEEECcCCcCCCcccHHHhcCCCCCEEECCCCcccCccCcc----------
Confidence 999988664 1 222378888999999998877533 3333 5667777766544321110000
Q ss_pred ccccchhhhHHHHhhcccccccccccChhhhhhcccchhhcccCcEEEeecCCceEEEEccCCccccccccceecccccc
Q 002313 433 NNSTYLGYGMKMLLKRTEDLHLDELAGFKNVVHELDDEEGFARLRHLHVHNGPEILHILNSDGRVGTFPLLESLFLHNLI 512 (937)
Q Consensus 433 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~ 512 (937)
.+++|++|++.++.....++..+.. .+++|++|+++++.-...+ +.....+++|++|+++++.
T Consensus 267 ------------~l~~L~~L~L~~n~l~~~ip~~~~~--~~~~L~~L~Ls~n~l~~~~---p~~~~~l~~L~~L~L~~n~ 329 (768)
T 3rgz_A 267 ------------PLKSLQYLSLAENKFTGEIPDFLSG--ACDTLTGLDLSGNHFYGAV---PPFFGSCSLLESLALSSNN 329 (768)
T ss_dssp ------------CCTTCCEEECCSSEEEESCCCCSCT--TCTTCSEEECCSSEEEECC---CGGGGGCTTCCEEECCSSE
T ss_pred ------------ccCCCCEEECcCCccCCccCHHHHh--hcCcCCEEECcCCcCCCcc---chHHhcCCCccEEECCCCc
Confidence 2345555555544332222222221 1255666666555322111 2222455566666666543
Q ss_pred cccccccccccCCCCCccCCCccEEEEecCCCcccccchhHHHhhc-cccEEEEcccccchhhhccccccccccCCcccc
Q 002313 513 NLEKVCDGKVRLNEDDKSFSNLRIIKVEGCHRVKHLFPFSLVKNLL-QLQKVKVTDCTNLKLIVGKESENSAHKNGSISG 591 (937)
Q Consensus 513 ~l~~~~~~~~~~~~~~~~l~~L~~L~l~~C~~L~~l~~~~~~~~l~-~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~i~~ 591 (937)
--..+.... ...+++|++|++++|.--..+|. .+..++ +|++|++++|.-...++.. +..
T Consensus 330 l~~~ip~~~------l~~l~~L~~L~Ls~n~l~~~~p~--~l~~l~~~L~~L~Ls~N~l~~~~~~~-----------~~~ 390 (768)
T 3rgz_A 330 FSGELPMDT------LLKMRGLKVLDLSFNEFSGELPE--SLTNLSASLLTLDLSSNNFSGPILPN-----------LCQ 390 (768)
T ss_dssp EEEECCHHH------HTTCTTCCEEECCSSEEEECCCT--THHHHTTTCSEEECCSSEEEEECCTT-----------TTC
T ss_pred ccCcCCHHH------HhcCCCCCEEeCcCCccCccccH--HHHhhhcCCcEEEccCCCcCCCcChh-----------hhh
Confidence 211211110 12455666666665432223332 233444 5666666655432211110 000
Q ss_pred ccccccceeeccCCCCccccccCCCCCcccCCCCCCccccCCCCCccccccccccCCCcceeeccCcccceeccCCcccc
Q 002313 592 VYFRKLHFLKLQHLPQLTSSGFDLETPTNTQGSNPGIIAEGDPKDFTSLFNERVVFPSLKKLKLSSINVEKIWLNSFSAI 671 (937)
Q Consensus 592 ~~~~~L~~L~l~~c~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~l~~~~~~~~~~~ 671 (937)
..+++|++|++.+|..-..++.. ...+++|+.|++++|.++......
T Consensus 391 ~~~~~L~~L~L~~n~l~~~~p~~-----------------------------l~~l~~L~~L~Ls~N~l~~~~p~~---- 437 (768)
T 3rgz_A 391 NPKNTLQELYLQNNGFTGKIPPT-----------------------------LSNCSELVSLHLSFNYLSGTIPSS---- 437 (768)
T ss_dssp STTCCCCEEECCSSEEEEECCGG-----------------------------GGGCTTCCEEECCSSEEESCCCGG----
T ss_pred cccCCccEEECCCCccccccCHH-----------------------------HhcCCCCCEEECcCCcccCcccHH----
Confidence 02445555555554322222211 122444444444444433221111
Q ss_pred cccCCCccEEEEeccCCccccchHHHHhhccccceeeeccccchHHHhccCCCCCCCcccccccccceeeeccCcccccc
Q 002313 672 ESWGKNLTKLTVEKCGRLKFLFSSSMVNGLEQLQQLDISHCKSMNEVINTRVGRDDNMIEMVFPKLVSLQLSHLPKLTRF 751 (937)
Q Consensus 672 ~~~l~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~~~~~L~~L~i~~c~~l~~~ 751 (937)
...+++|+.|++++|.....++ ..+..+++|+.|++++|.-...++.. ...+++|++|+++++.-...+
T Consensus 438 l~~l~~L~~L~L~~n~l~~~~p--~~~~~l~~L~~L~L~~N~l~~~~p~~---------l~~l~~L~~L~L~~N~l~~~~ 506 (768)
T 3rgz_A 438 LGSLSKLRDLKLWLNMLEGEIP--QELMYVKTLETLILDFNDLTGEIPSG---------LSNCTNLNWISLSNNRLTGEI 506 (768)
T ss_dssp GGGCTTCCEEECCSSCCCSCCC--GGGGGCTTCCEEECCSSCCCSCCCGG---------GGGCTTCCEEECCSSCCCSCC
T ss_pred HhcCCCCCEEECCCCcccCcCC--HHHcCCCCceEEEecCCcccCcCCHH---------HhcCCCCCEEEccCCccCCcC
Confidence 1233444444444443222221 12334444444444444321111110 112344444444444322122
Q ss_pred cccCCCCcccccceeeccCCCceeeccccccccccccccCccCcCccccccccCCCccEEEecCCCCcceeccC------
Q 002313 752 GIGDSVEFPSLCQLQIACCPNLKIFICSCTEEMSSEKNIHTTQTQPLFDEKVGLPKLEVLRIDGMDNLRKIWHH------ 825 (937)
Q Consensus 752 ~~~~~~~l~~L~~L~i~~C~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~L~~L~l~~c~~l~~l~~~------ 825 (937)
+ ..+..+++|+.|++++|.-....+ .....+++|+.|++++|+-...+|..
T Consensus 507 p-~~~~~l~~L~~L~L~~N~l~~~~p----------------------~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~ 563 (768)
T 3rgz_A 507 P-KWIGRLENLAILKLSNNSFSGNIP----------------------AELGDCRSLIWLDLNTNLFNGTIPAAMFKQSG 563 (768)
T ss_dssp C-GGGGGCTTCCEEECCSSCCEEECC----------------------GGGGGCTTCCEEECCSSEEESBCCGGGGTTTT
T ss_pred C-hHHhcCCCCCEEECCCCcccCcCC----------------------HHHcCCCCCCEEECCCCccCCcCChHHhcccc
Confidence 1 122334444444444442221100 00012333444444333211111100
Q ss_pred -------------------------------------------------------------CCCcccCCCCcEEEEEcCC
Q 002313 826 -------------------------------------------------------------QLALDSFTKLKDLDVEYCD 844 (937)
Q Consensus 826 -------------------------------------------------------------~~~~~~l~~L~~L~i~~C~ 844 (937)
...++.+++|+.|+++++.
T Consensus 564 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~ 643 (768)
T 3rgz_A 564 KIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNM 643 (768)
T ss_dssp CBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSC
T ss_pred hhhhhccccccccccccccccccccccccccccccccchhhhccccccccccccceecccCchhhhccccccEEECcCCc
Confidence 0013457899999998875
Q ss_pred CcccccchhHHHhcCCCcEEeecccccceeeecccCcccccCCCceeecccCcccccccccccccCCCCCcccCCccCeE
Q 002313 845 QLLSIFPSNMLRRLERLEHLAVSECGSIEEIVEISSNCTVETAPGVVFRQLTSLKLHWLPRLKSFCPGIHISGWLVLKNL 924 (937)
Q Consensus 845 ~L~~~~p~~~l~~l~~L~~L~i~~C~~l~~l~~~~~~~~~~~~~~~~~~sL~~L~i~~c~~L~~l~~~~~~~~~~~L~~L 924 (937)
++...|.+ ++.+++|+.|+++++.--..+|+. ...+++|++|+++++.--..+|... ..+++|++|
T Consensus 644 -l~g~ip~~-l~~l~~L~~L~Ls~N~l~g~ip~~----------l~~L~~L~~LdLs~N~l~g~ip~~l--~~l~~L~~L 709 (768)
T 3rgz_A 644 -LSGYIPKE-IGSMPYLFILNLGHNDISGSIPDE----------VGDLRGLNILDLSSNKLDGRIPQAM--SALTMLTEI 709 (768)
T ss_dssp -CBSCCCGG-GGGCTTCCEEECCSSCCCSCCCGG----------GGGCTTCCEEECCSSCCEECCCGGG--GGCCCCSEE
T ss_pred -ccccCCHH-HhccccCCEEeCcCCccCCCCChH----------HhCCCCCCEEECCCCcccCcCChHH--hCCCCCCEE
Confidence 55546764 689999999999997544456642 2358999999999985433556544 348999999
Q ss_pred EEecCCCcccCC
Q 002313 925 DVFECDKFETFS 936 (937)
Q Consensus 925 ~i~~C~~l~~lp 936 (937)
++++|+---.+|
T Consensus 710 ~ls~N~l~g~iP 721 (768)
T 3rgz_A 710 DLSNNNLSGPIP 721 (768)
T ss_dssp ECCSSEEEEECC
T ss_pred ECcCCcccccCC
Confidence 999996544444
No 4
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=5.2e-33 Score=328.41 Aligned_cols=528 Identities=19% Similarity=0.155 Sum_probs=343.8
Q ss_pred CcEEEccCCCCccCCcccCCCccceeeecCCcccccCChhhhcCCCCccEEEecCCcCccc-CccccCCCCCCEEEccCC
Q 002313 212 PTAISIPFRGIYELPERLGFLKLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHSL-PSSLGCLINLRTLSLENC 290 (937)
Q Consensus 212 l~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~l-p~~i~~l~~Lr~L~L~~~ 290 (937)
-+.++.+++.+..+|..+. +++++|++++|... .++...|.++++|++|++++|.+..+ |..|+++++||+|++++|
T Consensus 13 ~~~~~c~~~~l~~ip~~~~-~~l~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n 90 (606)
T 3vq2_A 13 NITYQCMDQKLSKVPDDIP-SSTKNIDLSFNPLK-ILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGN 90 (606)
T ss_dssp TTEEECTTSCCSSCCTTSC-TTCCEEECTTSCCC-EECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTC
T ss_pred CCceEccCCCcccCCCCCC-CCcCEEECCCCCcC-EeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCC
Confidence 4567778888888887664 78888888888764 44444578888888888888888877 667888888888888888
Q ss_pred cccCc--ccccCCCCCcEEecccCcCcccC-cccccCccCCEEEecCCCCCc--ccChhhhcCCCCCcEEEcCCCcccce
Q 002313 291 LVVDV--AIIGDLKKLEILSLKHSSIEQLP-REIGQLTCLKLLDLSNCSKLK--EIRPNVISNLTRLEELYMGNSFTQWK 365 (937)
Q Consensus 291 ~~~~l--~~i~~L~~L~~L~L~~~~l~~lp-~~i~~L~~L~~L~l~~~~~l~--~lp~~~l~~L~~L~~L~l~~~~~~~~ 365 (937)
.++.+ ..|+++++|++|++++|.+..+| ..++++++|++|++++|. +. .+|.. ++++++|++|++++|.+.
T Consensus 91 ~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~lp~~-~~~l~~L~~L~Ls~n~l~-- 166 (606)
T 3vq2_A 91 PIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNF-IHSCKLPAY-FSNLTNLVHVDLSYNYIQ-- 166 (606)
T ss_dssp CCCCCCTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSC-CCCCCCCGG-GGTCTTCCEEECCSSCCC--
T ss_pred cccccChhhcCCcccCCEEEccCCccccccccccCCCCCCCEEeCCCCc-ccceechHh-HhhcCCCCEEEccCCcce--
Confidence 88765 57888888888888888888776 568888888888888864 54 35655 888888888888888664
Q ss_pred ecCCCCCChhhhcCCCC-CCeEEeecCCCCCCCccc-cccccceeEEEecCcCCCCCCcCCcceEEEecccccchhhhHH
Q 002313 366 VEGQSNASLGELKQLSR-LTTLEVHIPDAQVMPQDL-VFVELERFRICIGDVWSWSDGYETSKTLKLQLNNSTYLGYGMK 443 (937)
Q Consensus 366 ~~~~~~~~~~~l~~l~~-L~~L~l~~~~~~~~~~~~-~~~~L~~l~l~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~ 443 (937)
+.....++.+.+++. +..++++++.+..++... ...+|+.+.+..+
T Consensus 167 --~~~~~~~~~l~~L~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~n------------------------------ 214 (606)
T 3vq2_A 167 --TITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGIKLHELTLRGN------------------------------ 214 (606)
T ss_dssp --EECTTTTHHHHHCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESC------------------------------
T ss_pred --ecChhhhhhhhccccccceeeccCCCcceeCcccccCceeeeeeccCC------------------------------
Confidence 222344556666654 567888888776655443 2224444443321
Q ss_pred HHhhcccccccccccCh-hhhhhcccchhhcccCcEEEeec--CCceEEEEccCCcccccc-----ccceeccccccccc
Q 002313 444 MLLKRTEDLHLDELAGF-KNVVHELDDEEGFARLRHLHVHN--GPEILHILNSDGRVGTFP-----LLESLFLHNLINLE 515 (937)
Q Consensus 444 ~~~~~L~~L~l~~~~~~-~~~~~~l~~~~~~~~L~~L~l~~--~~~~~~~~~~~~~~~~~p-----~L~~L~l~~~~~l~ 515 (937)
... ......+. .+++|+.+.+.. +.....+.. .....+. .++.+.+...+.+.
T Consensus 215 --------------~~~~~~~~~~~~---~l~~L~~l~l~~~~~~~~~~l~~--~~~~~~~~l~~l~l~~l~l~~~~~~~ 275 (606)
T 3vq2_A 215 --------------FNSSNIMKTCLQ---NLAGLHVHRLILGEFKDERNLEI--FEPSIMEGLCDVTIDEFRLTYTNDFS 275 (606)
T ss_dssp --------------CSCHHHHHHHHH---TTTTCEEEEEEEECCTTSCCCSC--CCGGGGTTGGGSEEEEEEECCCTTCC
T ss_pred --------------ccchhHHHHHhc---cccccccccccccccccCCcccc--cChHHhhhhhhccHhheecccccccc
Confidence 111 01111121 144444444321 111100000 0001222 23334443333333
Q ss_pred ccccccccCCCCCccCCCccEEEEecCCCcccccchhHHHhhccccEEEEcccccchhhhccccccccccCCcccccccc
Q 002313 516 KVCDGKVRLNEDDKSFSNLRIIKVEGCHRVKHLFPFSLVKNLLQLQKVKVTDCTNLKLIVGKESENSAHKNGSISGVYFR 595 (937)
Q Consensus 516 ~~~~~~~~~~~~~~~l~~L~~L~l~~C~~L~~l~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~i~~~~~~ 595 (937)
... + . ...+++|+.|++.++. ++.+| .+..+++|++|++.+|.. +.++. + .++
T Consensus 276 ~~~----~--~-~~~l~~L~~L~l~~~~-~~~l~---~l~~~~~L~~L~l~~n~l-~~lp~------------~---~l~ 328 (606)
T 3vq2_A 276 DDI----V--K-FHCLANVSAMSLAGVS-IKYLE---DVPKHFKWQSLSIIRCQL-KQFPT------------L---DLP 328 (606)
T ss_dssp GGG----G--S-CGGGTTCSEEEEESCC-CCCCC---CCCTTCCCSEEEEESCCC-SSCCC------------C---CCS
T ss_pred ccc----c--c-cccCCCCCEEEecCcc-chhhh---hccccccCCEEEcccccC-ccccc------------C---CCC
Confidence 321 1 1 4577899999999854 56776 345788999999999865 44431 1 678
Q ss_pred ccceeeccCCCCccccccCCCCCcccCCCCCCccccCCCCCccccccccccCCCcceeeccCcccceeccCCcccccccC
Q 002313 596 KLHFLKLQHLPQLTSSGFDLETPTNTQGSNPGIIAEGDPKDFTSLFNERVVFPSLKKLKLSSINVEKIWLNSFSAIESWG 675 (937)
Q Consensus 596 ~L~~L~l~~c~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~l~~~~~~~~~~~~~~l 675 (937)
+|++|++.++..+..+. ...+++|+.|++++|.++.+..... ....+
T Consensus 329 ~L~~L~l~~n~~~~~~~-------------------------------~~~l~~L~~L~ls~n~l~~~~~~~~--~~~~~ 375 (606)
T 3vq2_A 329 FLKSLTLTMNKGSISFK-------------------------------KVALPSLSYLDLSRNALSFSGCCSY--SDLGT 375 (606)
T ss_dssp SCCEEEEESCSSCEECC-------------------------------CCCCTTCCEEECCSSCEEEEEECCH--HHHCC
T ss_pred ccceeeccCCcCccchh-------------------------------hccCCCCCEEECcCCccCCCcchhh--hhccC
Confidence 89999998886655432 1358899999999997776631110 13467
Q ss_pred CCccEEEEeccCCccccchHHHHhhccccceeeeccccchHHHhccCCCCCCCcccccccccceeeeccCcccccccccC
Q 002313 676 KNLTKLTVEKCGRLKFLFSSSMVNGLEQLQQLDISHCKSMNEVINTRVGRDDNMIEMVFPKLVSLQLSHLPKLTRFGIGD 755 (937)
Q Consensus 676 ~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~~~~~L~~L~i~~c~~l~~~~~~~ 755 (937)
++|++|++++|. ++.++ ..+..+++|+.|++++|.-....+.. ....+++|++|+++++. ++......
T Consensus 376 ~~L~~L~L~~n~-l~~~~--~~~~~l~~L~~L~l~~n~l~~~~~~~--------~~~~l~~L~~L~l~~n~-l~~~~~~~ 443 (606)
T 3vq2_A 376 NSLRHLDLSFNG-AIIMS--ANFMGLEELQHLDFQHSTLKRVTEFS--------AFLSLEKLLYLDISYTN-TKIDFDGI 443 (606)
T ss_dssp SCCCEEECCSCS-EEEEC--CCCTTCTTCCEEECTTSEEESTTTTT--------TTTTCTTCCEEECTTSC-CEECCTTT
T ss_pred CcccEeECCCCc-cccch--hhccCCCCCCeeECCCCccCCccChh--------hhhccccCCEEECcCCC-CCccchhh
Confidence 899999999885 55443 35678899999999887533322211 11256889999998875 44444455
Q ss_pred CCCcccccceeeccCCCceeeccccccccccccccCccCcCccccccccCCCccEEEecCCCCcceeccCCCCcccCCCC
Q 002313 756 SVEFPSLCQLQIACCPNLKIFICSCTEEMSSEKNIHTTQTQPLFDEKVGLPKLEVLRIDGMDNLRKIWHHQLALDSFTKL 835 (937)
Q Consensus 756 ~~~l~~L~~L~i~~C~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~~l~~L 835 (937)
+..+++|+.|++++|.--.... +.. ...+++|++|++++| .++.++... +..+++|
T Consensus 444 ~~~l~~L~~L~l~~n~l~~~~~--------------~~~-------~~~l~~L~~L~Ls~n-~l~~~~~~~--~~~l~~L 499 (606)
T 3vq2_A 444 FLGLTSLNTLKMAGNSFKDNTL--------------SNV-------FANTTNLTFLDLSKC-QLEQISWGV--FDTLHRL 499 (606)
T ss_dssp TTTCTTCCEEECTTCEEGGGEE--------------CSC-------CTTCTTCCEEECTTS-CCCEECTTT--TTTCTTC
T ss_pred hcCCCCCCEEECCCCcCCCcch--------------HHh-------hccCCCCCEEECCCC-cCCccChhh--hcccccC
Confidence 6778889999988874321000 011 136789999999988 676665543 4567899
Q ss_pred cEEEEEcCCCcccccchhHHHhcCCCcEEeecccccceeeecccCcccccCCCceeec-ccCccccccccc
Q 002313 836 KDLDVEYCDQLLSIFPSNMLRRLERLEHLAVSECGSIEEIVEISSNCTVETAPGVVFR-QLTSLKLHWLPR 905 (937)
Q Consensus 836 ~~L~i~~C~~L~~~~p~~~l~~l~~L~~L~i~~C~~l~~l~~~~~~~~~~~~~~~~~~-sL~~L~i~~c~~ 905 (937)
++|++++| .++.+.|. .+..+++|++|++++|. ++.+|.. ...++ +|++|++.++|-
T Consensus 500 ~~L~Ls~N-~l~~~~~~-~~~~l~~L~~L~l~~N~-l~~~p~~----------~~~l~~~L~~l~l~~N~~ 557 (606)
T 3vq2_A 500 QLLNMSHN-NLLFLDSS-HYNQLYSLSTLDCSFNR-IETSKGI----------LQHFPKSLAFFNLTNNSV 557 (606)
T ss_dssp CEEECCSS-CCSCEEGG-GTTTCTTCCEEECTTSC-CCCEESC----------GGGSCTTCCEEECCSCCC
T ss_pred CEEECCCC-cCCCcCHH-HccCCCcCCEEECCCCc-CcccCHh----------HhhhcccCcEEEccCCCc
Confidence 99999888 45554454 56788999999999875 7777752 11344 589999988764
No 5
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=5.9e-33 Score=332.52 Aligned_cols=544 Identities=18% Similarity=0.154 Sum_probs=365.8
Q ss_pred hccCCCcEEEccCCCCccCCcc-c-CCCccceeeecCCcccccCChhhhcCCCCccEEEecCCcCcccC-ccccCCCCCC
Q 002313 207 KIDEAPTAISIPFRGIYELPER-L-GFLKLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHSLP-SSLGCLINLR 283 (937)
Q Consensus 207 ~~~~~l~~l~l~~~~~~~l~~~-~-~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~lp-~~i~~l~~Lr 283 (937)
...++++.++++++.+..+++. + .+++|++|++.+|.+. .+|...|+++++|++|++++|.+..+| ..|+++++|+
T Consensus 46 ~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 124 (680)
T 1ziw_A 46 TRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELS-QLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLI 124 (680)
T ss_dssp GGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCC-CCCTTTTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCC
T ss_pred hCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccC-ccChhhhccCCCCCEEECCCCccCccChhHccccCCCC
Confidence 4467899999999999887554 3 7999999999998754 677777899999999999999999885 6799999999
Q ss_pred EEEccCCcccCc--ccccCCCCCcEEecccCcCcccCcc-c--ccCccCCEEEecCCCCCcccChhhhcCCCCCcEEEcC
Q 002313 284 TLSLENCLVVDV--AIIGDLKKLEILSLKHSSIEQLPRE-I--GQLTCLKLLDLSNCSKLKEIRPNVISNLTRLEELYMG 358 (937)
Q Consensus 284 ~L~L~~~~~~~l--~~i~~L~~L~~L~L~~~~l~~lp~~-i--~~L~~L~~L~l~~~~~l~~lp~~~l~~L~~L~~L~l~ 358 (937)
+|++++|.+... ..++++++|++|++++|.++.++.. + ..+++|++|++++| .+..+++..++.+.+|+.|++.
T Consensus 125 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~l~ 203 (680)
T 1ziw_A 125 TLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSN-QIKEFSPGCFHAIGRLFGLFLN 203 (680)
T ss_dssp EEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTTC-CCCCBCTTGGGGSSEECEEECT
T ss_pred EEECCCCcccccCchhhcccccCCEEEccCCcccccCHHHhhccccccccEEECCCC-cccccChhhhhhhhhhhhhhcc
Confidence 999999998765 6789999999999999999988754 3 35689999999996 4777777778999999999998
Q ss_pred CCcccceecCCCCCChhhhcCCCCCCeEEeecCCCCCCCccc--cc--cccceeEEEecCcCCCCCCcCCcceEEEeccc
Q 002313 359 NSFTQWKVEGQSNASLGELKQLSRLTTLEVHIPDAQVMPQDL--VF--VELERFRICIGDVWSWSDGYETSKTLKLQLNN 434 (937)
Q Consensus 359 ~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~--~~--~~L~~l~l~~~~~~~~~~~~~~~~~l~l~~~~ 434 (937)
++....... ......+ ..++|+.|+++++.....+... .. .+|+.|.+..+.
T Consensus 204 ~~~l~~~~~---~~~~~~l-~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~-------------------- 259 (680)
T 1ziw_A 204 NVQLGPSLT---EKLCLEL-ANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNN-------------------- 259 (680)
T ss_dssp TCCCHHHHH---HHHHHHH-TTSCCCEEECTTSCCCEECTTTTGGGGGSCCCEEECTTSC--------------------
T ss_pred ccccChhhH---HHHHHHh-hhccccEEEccCCcccccChhHhhccCcCCCCEEECCCCC--------------------
Confidence 875431000 0011111 3478999999998776544322 22 336666654332
Q ss_pred ccchhhhHHHHhhcccccccccccChhhhhhcccchhhcccCcEEEeecCCceEE-----EEc-cCCccccccccceecc
Q 002313 435 STYLGYGMKMLLKRTEDLHLDELAGFKNVVHELDDEEGFARLRHLHVHNGPEILH-----ILN-SDGRVGTFPLLESLFL 508 (937)
Q Consensus 435 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~-----~~~-~~~~~~~~p~L~~L~l 508 (937)
...........+++|++|++.++.........+.. +++|++|++.++..... ++. .......+++|++|++
T Consensus 260 l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~---l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l 336 (680)
T 1ziw_A 260 LNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHG---LFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNM 336 (680)
T ss_dssp CCEECTTTTTTCTTCCEEECCSCCBSEECTTTTTT---CTTCCEEECTTCBCCC------CCEECTTTTTTCTTCCEEEC
T ss_pred cCccCcccccCcccccEeeCCCCccCccChhhhcC---CCCccEEeccchhhhcccccccccccChhhcccCCCCCEEEC
Confidence 11111111223567777777765443333334444 78888888876432211 100 0112256788888888
Q ss_pred cccccccccccccccCCCCCccCCCccEEEEecCC-CcccccchhHHHh--hccccEEEEcccccchhhhcccccccccc
Q 002313 509 HNLINLEKVCDGKVRLNEDDKSFSNLRIIKVEGCH-RVKHLFPFSLVKN--LLQLQKVKVTDCTNLKLIVGKESENSAHK 585 (937)
Q Consensus 509 ~~~~~l~~~~~~~~~~~~~~~~l~~L~~L~l~~C~-~L~~l~~~~~~~~--l~~L~~L~i~~c~~l~~~~~~~~~~~~~~ 585 (937)
+++ .+..+.. .....+++|++|++++|. .+..++. ..+.. .++|+.|++++|.- ..+....
T Consensus 337 ~~n-~l~~~~~------~~~~~l~~L~~L~Ls~n~~~~~~l~~-~~f~~~~~~~L~~L~L~~n~l-~~~~~~~------- 400 (680)
T 1ziw_A 337 EDN-DIPGIKS------NMFTGLINLKYLSLSNSFTSLRTLTN-ETFVSLAHSPLHILNLTKNKI-SKIESDA------- 400 (680)
T ss_dssp CSC-CBCCCCT------TTTTTCTTCCEEECTTCBSCCCEECT-TTTGGGTTSCCCEEECTTSCC-CEECTTT-------
T ss_pred CCC-ccCCCCh------hHhccccCCcEEECCCCchhhhhcch-hhhcccccCcCceEECCCCCC-CeEChhh-------
Confidence 875 3333221 123467889999988864 2444432 11222 25788998888653 3222110
Q ss_pred CCccccccccccceeeccCCCCccccccCCCCCcccCCCCCCccccCCCCCccccccccccCCCcceeeccCcccceecc
Q 002313 586 NGSISGVYFRKLHFLKLQHLPQLTSSGFDLETPTNTQGSNPGIIAEGDPKDFTSLFNERVVFPSLKKLKLSSINVEKIWL 665 (937)
Q Consensus 586 ~~~i~~~~~~~L~~L~l~~c~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~l~~~~~ 665 (937)
+ ..+++|+.|++.++..-..++.. ....+++|++|++++|.+..+..
T Consensus 401 ---~--~~l~~L~~L~L~~N~l~~~~~~~----------------------------~~~~l~~L~~L~Ls~n~l~~~~~ 447 (680)
T 1ziw_A 401 ---F--SWLGHLEVLDLGLNEIGQELTGQ----------------------------EWRGLENIFEIYLSYNKYLQLTR 447 (680)
T ss_dssp ---T--TTCTTCCEEECCSSCCEEECCSG----------------------------GGTTCTTCCEEECCSCSEEECCT
T ss_pred ---h--hCCCCCCEEeCCCCcCccccCcc----------------------------cccCcccccEEecCCCCcceeCh
Confidence 1 26788888888887543333211 02347889999999998877764
Q ss_pred CCcccccccCCCccEEEEeccCCc--cccchHHHHhhccccceeeeccccchHHHhccCCCCCCCcccccccccceeeec
Q 002313 666 NSFSAIESWGKNLTKLTVEKCGRL--KFLFSSSMVNGLEQLQQLDISHCKSMNEVINTRVGRDDNMIEMVFPKLVSLQLS 743 (937)
Q Consensus 666 ~~~~~~~~~l~~L~~L~i~~c~~l--~~l~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~~~~~L~~L~i~ 743 (937)
..+ ..+++|+.|++.+|..- ..++ ..+..+++|+.|+++++. +..++.. ....+++|++|+++
T Consensus 448 ~~~----~~~~~L~~L~l~~n~l~~~~~~p--~~~~~l~~L~~L~Ls~N~-l~~i~~~--------~~~~l~~L~~L~Ls 512 (680)
T 1ziw_A 448 NSF----ALVPSLQRLMLRRVALKNVDSSP--SPFQPLRNLTILDLSNNN-IANINDD--------MLEGLEKLEILDLQ 512 (680)
T ss_dssp TTT----TTCTTCCEEECTTSCCBCTTCSS--CTTTTCTTCCEEECCSSC-CCCCCTT--------TTTTCTTCCEEECC
T ss_pred hhh----hcCcccccchhccccccccccCC--cccccCCCCCEEECCCCC-CCcCChh--------hhccccccCEEeCC
Confidence 443 36788999999887532 2222 246788899999998864 4433321 11246788999988
Q ss_pred cCcccccccc--------cCCCCcccccceeeccCCCceeeccccccccccccccCccCcCccccccccCCCccEEEecC
Q 002313 744 HLPKLTRFGI--------GDSVEFPSLCQLQIACCPNLKIFICSCTEEMSSEKNIHTTQTQPLFDEKVGLPKLEVLRIDG 815 (937)
Q Consensus 744 ~c~~l~~~~~--------~~~~~l~~L~~L~i~~C~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~L~~L~l~~ 815 (937)
++. ++.++. ..+..+++|+.|+++++. ++.++ ...+ ..+++|+.|++++
T Consensus 513 ~N~-l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~-l~~i~--------------~~~~-------~~l~~L~~L~Ls~ 569 (680)
T 1ziw_A 513 HNN-LARLWKHANPGGPIYFLKGLSHLHILNLESNG-FDEIP--------------VEVF-------KDLFELKIIDLGL 569 (680)
T ss_dssp SSC-CGGGGSTTSTTSCCCTTTTCTTCCEEECCSSC-CCCCC--------------TTTT-------TTCTTCCEEECCS
T ss_pred CCC-ccccchhhccCCcchhhcCCCCCCEEECCCCC-CCCCC--------------HHHc-------ccccCcceeECCC
Confidence 764 444322 235678899999998863 22111 0111 3689999999998
Q ss_pred CCCcceeccCCCCcccCCCCcEEEEEcCCCcccccchhHHH-hcCCCcEEeeccccc
Q 002313 816 MDNLRKIWHHQLALDSFTKLKDLDVEYCDQLLSIFPSNMLR-RLERLEHLAVSECGS 871 (937)
Q Consensus 816 c~~l~~l~~~~~~~~~l~~L~~L~i~~C~~L~~~~p~~~l~-~l~~L~~L~i~~C~~ 871 (937)
+ .++.++... ...+++|+.|+++++ .++. ++...+. .+++|+.|+++++|-
T Consensus 570 N-~l~~l~~~~--~~~l~~L~~L~L~~N-~l~~-~~~~~~~~~~~~L~~l~l~~N~~ 621 (680)
T 1ziw_A 570 N-NLNTLPASV--FNNQVSLKSLNLQKN-LITS-VEKKVFGPAFRNLTELDMRFNPF 621 (680)
T ss_dssp S-CCCCCCTTT--TTTCTTCCEEECTTS-CCCB-CCHHHHHHHHTTCSEEECTTCCC
T ss_pred C-CCCcCCHhH--hCCCCCCCEEECCCC-cCCc-cChhHhcccccccCEEEccCCCc
Confidence 7 788887654 346899999999887 6777 4555565 799999999998663
No 6
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=3.3e-33 Score=330.07 Aligned_cols=524 Identities=19% Similarity=0.171 Sum_probs=345.4
Q ss_pred cCcchhhhhhccCCCcEEEccCCCCccCCc-cc-CCCccceeeecCCcccccCChhhhcCCCCccEEEecCCcCccc-Cc
Q 002313 198 VADLKEELDKIDEAPTAISIPFRGIYELPE-RL-GFLKLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHSL-PS 274 (937)
Q Consensus 198 ~~~~~~~~~~~~~~l~~l~l~~~~~~~l~~-~~-~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~l-p~ 274 (937)
+.++..+|...+++++++++++|.+..++. .+ .+++|++|++++|.+.. +++..|.++++||+|++++|.+..+ |.
T Consensus 20 ~~~l~~ip~~~~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~-i~~~~~~~l~~L~~L~Ls~n~l~~~~p~ 98 (606)
T 3vq2_A 20 DQKLSKVPDDIPSSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIET-IEDKAWHGLHHLSNLILTGNPIQSFSPG 98 (606)
T ss_dssp TSCCSSCCTTSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCE-ECTTTTTTCTTCCEEECTTCCCCCCCTT
T ss_pred CCCcccCCCCCCCCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCcccc-cCHHHhhchhhcCEeECCCCcccccChh
Confidence 456777777788999999999999998876 34 79999999999997654 4445579999999999999999988 88
Q ss_pred cccCCCCCCEEEccCCcccCc--ccccCCCCCcEEecccCcCc--ccCcccccCccCCEEEecCCCCCcccChhhhcCCC
Q 002313 275 SLGCLINLRTLSLENCLVVDV--AIIGDLKKLEILSLKHSSIE--QLPREIGQLTCLKLLDLSNCSKLKEIRPNVISNLT 350 (937)
Q Consensus 275 ~i~~l~~Lr~L~L~~~~~~~l--~~i~~L~~L~~L~L~~~~l~--~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~l~~L~ 350 (937)
.|+++++|++|++++|.+..+ ..++++++|++|++++|.+. .+|..++++++|++|++++| .+..+++..++.++
T Consensus 99 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~ 177 (606)
T 3vq2_A 99 SFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYN-YIQTITVNDLQFLR 177 (606)
T ss_dssp SSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSS-CCCEECTTTTHHHH
T ss_pred hcCCcccCCEEEccCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCC-cceecChhhhhhhh
Confidence 999999999999999999876 57999999999999999998 57999999999999999995 47777766577777
Q ss_pred CCc----EEEcCCCcccceecCCCCCChhhhcCCCCCCeEEeecCCCCC--CCccc-cccccceeEEEecCcCCCCCCcC
Q 002313 351 RLE----ELYMGNSFTQWKVEGQSNASLGELKQLSRLTTLEVHIPDAQV--MPQDL-VFVELERFRICIGDVWSWSDGYE 423 (937)
Q Consensus 351 ~L~----~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~--~~~~~-~~~~L~~l~l~~~~~~~~~~~~~ 423 (937)
+|+ +|++++|.+. + .....+. ..+|+.|+++++.... .+..+ ....++.+.+..+.... ..
T Consensus 178 ~L~~~l~~L~l~~n~l~----~---~~~~~~~-~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~----~~ 245 (606)
T 3vq2_A 178 ENPQVNLSLDMSLNPID----F---IQDQAFQ-GIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKD----ER 245 (606)
T ss_dssp HCTTCCCEEECTTCCCC----E---ECTTTTT-TCEEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTT----SC
T ss_pred ccccccceeeccCCCcc----e---eCccccc-CceeeeeeccCCccchhHHHHHhcccccccccccccccccc----CC
Confidence 665 8999998764 1 1112233 3379999999886532 11111 33444444443221100 00
Q ss_pred CcceEEEecccccchhhhHHHHhhcccccccccccChhhhhhcccchhhcccCcEEEeecCCceEEEEccCCcccccccc
Q 002313 424 TSKTLKLQLNNSTYLGYGMKMLLKRTEDLHLDELAGFKNVVHELDDEEGFARLRHLHVHNGPEILHILNSDGRVGTFPLL 503 (937)
Q Consensus 424 ~~~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~p~L 503 (937)
. +..+. ......+.. + .++.+.+.....+.... +. ...+++|
T Consensus 246 ~------------------------l~~~~-------~~~~~~l~~---l-~l~~l~l~~~~~~~~~~--~~-~~~l~~L 287 (606)
T 3vq2_A 246 N------------------------LEIFE-------PSIMEGLCD---V-TIDEFRLTYTNDFSDDI--VK-FHCLANV 287 (606)
T ss_dssp C------------------------CSCCC-------GGGGTTGGG---S-EEEEEEECCCTTCCGGG--GS-CGGGTTC
T ss_pred c------------------------ccccC-------hHHhhhhhh---c-cHhheeccccccccccc--cc-cccCCCC
Confidence 0 00000 000011111 1 23334432222221110 00 2445556
Q ss_pred ceecccccccccccccccccCCCCCccCCCccEEEEecCCCcccccchhHHHhhccccEEEEcccccchhhhcccccccc
Q 002313 504 ESLFLHNLINLEKVCDGKVRLNEDDKSFSNLRIIKVEGCHRVKHLFPFSLVKNLLQLQKVKVTDCTNLKLIVGKESENSA 583 (937)
Q Consensus 504 ~~L~l~~~~~l~~~~~~~~~~~~~~~~l~~L~~L~l~~C~~L~~l~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~ 583 (937)
+.|.+.++. +..+. ....+++|++|++++|.- ..+|.+ .+++|++|++.+|..+..+.
T Consensus 288 ~~L~l~~~~-~~~l~--------~l~~~~~L~~L~l~~n~l-~~lp~~----~l~~L~~L~l~~n~~~~~~~-------- 345 (606)
T 3vq2_A 288 SAMSLAGVS-IKYLE--------DVPKHFKWQSLSIIRCQL-KQFPTL----DLPFLKSLTLTMNKGSISFK-------- 345 (606)
T ss_dssp SEEEEESCC-CCCCC--------CCCTTCCCSEEEEESCCC-SSCCCC----CCSSCCEEEEESCSSCEECC--------
T ss_pred CEEEecCcc-chhhh--------hccccccCCEEEcccccC-cccccC----CCCccceeeccCCcCccchh--------
Confidence 666665542 22221 134567888888888654 677632 67888888888875544321
Q ss_pred ccCCccccccccccceeeccCCCCccccccCCCCCcccCCCCCCccccCCCCCccccccccccCCCcceeeccCccccee
Q 002313 584 HKNGSISGVYFRKLHFLKLQHLPQLTSSGFDLETPTNTQGSNPGIIAEGDPKDFTSLFNERVVFPSLKKLKLSSINVEKI 663 (937)
Q Consensus 584 ~~~~~i~~~~~~~L~~L~l~~c~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~l~~~ 663 (937)
...+++|++|+++++. +...... ......+++|++|++++|.++.+
T Consensus 346 -------~~~l~~L~~L~ls~n~-l~~~~~~--------------------------~~~~~~~~~L~~L~L~~n~l~~~ 391 (606)
T 3vq2_A 346 -------KVALPSLSYLDLSRNA-LSFSGCC--------------------------SYSDLGTNSLRHLDLSFNGAIIM 391 (606)
T ss_dssp -------CCCCTTCCEEECCSSC-EEEEEEC--------------------------CHHHHCCSCCCEEECCSCSEEEE
T ss_pred -------hccCCCCCEEECcCCc-cCCCcch--------------------------hhhhccCCcccEeECCCCccccc
Confidence 1267888888888763 2221100 00123578888888888888777
Q ss_pred ccCCcccccccCCCccEEEEeccCCccccchHHHHhhccccceeeeccccchHHHhccCCCCCCCcccccccccceeeec
Q 002313 664 WLNSFSAIESWGKNLTKLTVEKCGRLKFLFSSSMVNGLEQLQQLDISHCKSMNEVINTRVGRDDNMIEMVFPKLVSLQLS 743 (937)
Q Consensus 664 ~~~~~~~~~~~l~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~~~~~L~~L~i~ 743 (937)
+. . ...+++|++|++++|.. +..++...+..+++|+.|++++|......+.. ...+++|++|++.
T Consensus 392 ~~-~----~~~l~~L~~L~l~~n~l-~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~---------~~~l~~L~~L~l~ 456 (606)
T 3vq2_A 392 SA-N----FMGLEELQHLDFQHSTL-KRVTEFSAFLSLEKLLYLDISYTNTKIDFDGI---------FLGLTSLNTLKMA 456 (606)
T ss_dssp CC-C----CTTCTTCCEEECTTSEE-ESTTTTTTTTTCTTCCEEECTTSCCEECCTTT---------TTTCTTCCEEECT
T ss_pred hh-h----ccCCCCCCeeECCCCcc-CCccChhhhhccccCCEEECcCCCCCccchhh---------hcCCCCCCEEECC
Confidence 62 1 34678888888888843 33333345678888999999887633222211 1246888999998
Q ss_pred cCcccccccccCCCCcccccceeeccCCCceeeccccccccccccccCccCcCccccccccCCCccEEEecCCCCcceec
Q 002313 744 HLPKLTRFGIGDSVEFPSLCQLQIACCPNLKIFICSCTEEMSSEKNIHTTQTQPLFDEKVGLPKLEVLRIDGMDNLRKIW 823 (937)
Q Consensus 744 ~c~~l~~~~~~~~~~l~~L~~L~i~~C~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~L~~L~l~~c~~l~~l~ 823 (937)
++.--.......+..+++|+.|++++|.--...+ ..+ ..+++|++|++++| .++.+.
T Consensus 457 ~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~---------------~~~-------~~l~~L~~L~Ls~N-~l~~~~ 513 (606)
T 3vq2_A 457 GNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISW---------------GVF-------DTLHRLQLLNMSHN-NLLFLD 513 (606)
T ss_dssp TCEEGGGEECSCCTTCTTCCEEECTTSCCCEECT---------------TTT-------TTCTTCCEEECCSS-CCSCEE
T ss_pred CCcCCCcchHHhhccCCCCCEEECCCCcCCccCh---------------hhh-------cccccCCEEECCCC-cCCCcC
Confidence 8754433445566778999999998884332111 111 36789999999998 566664
Q ss_pred cCCCCcccCCCCcEEEEEcCCCcccccchhHHHhcC-CCcEEeecccccc
Q 002313 824 HHQLALDSFTKLKDLDVEYCDQLLSIFPSNMLRRLE-RLEHLAVSECGSI 872 (937)
Q Consensus 824 ~~~~~~~~l~~L~~L~i~~C~~L~~~~p~~~l~~l~-~L~~L~i~~C~~l 872 (937)
+.. +..+++|+.|++++|. ++. +|.. +..++ +|+.|+++++|-.
T Consensus 514 ~~~--~~~l~~L~~L~l~~N~-l~~-~p~~-~~~l~~~L~~l~l~~N~~~ 558 (606)
T 3vq2_A 514 SSH--YNQLYSLSTLDCSFNR-IET-SKGI-LQHFPKSLAFFNLTNNSVA 558 (606)
T ss_dssp GGG--TTTCTTCCEEECTTSC-CCC-EESC-GGGSCTTCCEEECCSCCCC
T ss_pred HHH--ccCCCcCCEEECCCCc-Ccc-cCHh-HhhhcccCcEEEccCCCcc
Confidence 433 4567899999998875 666 5665 66776 6999999987643
No 7
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=2.1e-32 Score=323.23 Aligned_cols=529 Identities=15% Similarity=0.104 Sum_probs=276.6
Q ss_pred EEEccCCCCccCCcccCCCccceeeecCCcccccCChhhhcCCCCccEEEecCCcCccc-CccccCCCCCCEEEccCCcc
Q 002313 214 AISIPFRGIYELPERLGFLKLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHSL-PSSLGCLINLRTLSLENCLV 292 (937)
Q Consensus 214 ~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~l-p~~i~~l~~Lr~L~L~~~~~ 292 (937)
.++.++..+..+|..+. .++++|++++|.+.. +++..|+++++|++|++++|.+..+ |..|+++++|++|++++|.+
T Consensus 16 ~~~c~~~~l~~iP~~l~-~~l~~L~Ls~n~i~~-~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l 93 (606)
T 3t6q_A 16 TYNCENLGLNEIPGTLP-NSTECLEFSFNVLPT-IQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPL 93 (606)
T ss_dssp EEECTTSCCSSCCTTSC-TTCCEEECTTCCCSE-ECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCC
T ss_pred eEECCCCCcccCcCCCC-CcCcEEEccCCccCc-CChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCCcc
Confidence 44444444555554431 245555555554432 2222345555555555555555544 44555555555555555555
Q ss_pred cCc--ccccCCCCCcEEecccCcCccc-CcccccCccCCEEEecCCCCCcccChhhhcCCCCCcEEEcCCCcccceecCC
Q 002313 293 VDV--AIIGDLKKLEILSLKHSSIEQL-PREIGQLTCLKLLDLSNCSKLKEIRPNVISNLTRLEELYMGNSFTQWKVEGQ 369 (937)
Q Consensus 293 ~~l--~~i~~L~~L~~L~L~~~~l~~l-p~~i~~L~~L~~L~l~~~~~l~~lp~~~l~~L~~L~~L~l~~~~~~~~~~~~ 369 (937)
..+ ..++++++|++|++++|.++.+ |..++++++|++|++++|. +..++...+..+++|++|++++|.+.
T Consensus 94 ~~~~~~~~~~l~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~------ 166 (606)
T 3t6q_A 94 IFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNH-ISSIKLPKGFPTEKLKVLDFQNNAIH------ 166 (606)
T ss_dssp SEECTTTTSSCTTCCEEECTTSCCSCGGGSCCTTCTTCCEEECCSSC-CCCCCCCTTCCCTTCCEEECCSSCCC------
T ss_pred cccChhhhcccccccEeeccccCcccCCcchhccCCcccEEECCCCc-ccccCcccccCCcccCEEEcccCccc------
Confidence 433 3455555555555555555554 3445555555555555532 43332111333555555555555432
Q ss_pred CCCChhhhcCCCCCC--eEEeecCCCCCCCccc-cccccceeEEEecCcCCCCCCcCCcceEEEecccccchhhhHHHHh
Q 002313 370 SNASLGELKQLSRLT--TLEVHIPDAQVMPQDL-VFVELERFRICIGDVWSWSDGYETSKTLKLQLNNSTYLGYGMKMLL 446 (937)
Q Consensus 370 ~~~~~~~l~~l~~L~--~L~l~~~~~~~~~~~~-~~~~L~~l~l~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~ 446 (937)
......+..+++|+ .|+++++.+...+... ....++.+.+.++ ... ......+
T Consensus 167 -~~~~~~~~~l~~L~~l~L~l~~n~l~~~~~~~~~~~~L~~L~l~~~--------------------~~~---~~~~~~l 222 (606)
T 3t6q_A 167 -YLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGT--------------------QNL---LVIFKGL 222 (606)
T ss_dssp -EECHHHHHTTTTCCSEEEECTTCCCCEECTTTTTTCEEEEEECTTC--------------------SCH---HHHHHHT
T ss_pred -ccChhhhhhhcccceeEEecCCCccCccChhHhhhccccccccCCc--------------------hhH---HHHhhhc
Confidence 12233444444454 4555554443333222 2222333322111 000 0000011
Q ss_pred hc--ccccccccccChhh---hhhcccchhhcccCcEEEeecCCceEEEEccCCccccccccceeccccccccccccccc
Q 002313 447 KR--TEDLHLDELAGFKN---VVHELDDEEGFARLRHLHVHNGPEILHILNSDGRVGTFPLLESLFLHNLINLEKVCDGK 521 (937)
Q Consensus 447 ~~--L~~L~l~~~~~~~~---~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~l~~~~~~~ 521 (937)
.+ ++.+.+..+..... ....+.. -.-.+|++|+++++.- ..+. ......+++|++|+++++ .++.+.
T Consensus 223 ~~~~l~~l~~~~~~~~~~~~i~~~~~~~-l~~~~L~~L~l~~n~l-~~~~--~~~~~~l~~L~~L~l~~n-~l~~lp--- 294 (606)
T 3t6q_A 223 KNSTIQSLWLGTFEDMDDEDISPAVFEG-LCEMSVESINLQKHYF-FNIS--SNTFHCFSGLQELDLTAT-HLSELP--- 294 (606)
T ss_dssp TTCEEEEEECCCCTTSCCCCCCGGGGGG-GGGSEEEEEECTTCCC-SSCC--TTTTTTCTTCSEEECTTS-CCSCCC---
T ss_pred cccchhheechhhccccccccChhHhch-hhcCceeEEEeecCcc-CccC--HHHhccccCCCEEeccCC-ccCCCC---
Confidence 11 11111111111000 0011111 0012688888877633 2221 122356788888888886 344331
Q ss_pred ccCCCCCccCCCccEEEEecCCCcccccchhHHHhhccccEEEEcccccchhhhccccccccccCCccccccccccceee
Q 002313 522 VRLNEDDKSFSNLRIIKVEGCHRVKHLFPFSLVKNLLQLQKVKVTDCTNLKLIVGKESENSAHKNGSISGVYFRKLHFLK 601 (937)
Q Consensus 522 ~~~~~~~~~l~~L~~L~l~~C~~L~~l~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~i~~~~~~~L~~L~ 601 (937)
.....+++|++|++++| +++.+++ ..+..+++|++|++++|.....++... + ..+++|++|+
T Consensus 295 ----~~l~~l~~L~~L~l~~n-~l~~~~~-~~~~~l~~L~~L~l~~n~~~~~~~~~~----------~--~~l~~L~~L~ 356 (606)
T 3t6q_A 295 ----SGLVGLSTLKKLVLSAN-KFENLCQ-ISASNFPSLTHLSIKGNTKRLELGTGC----------L--ENLENLRELD 356 (606)
T ss_dssp ----SSCCSCTTCCEEECTTC-CCSBGGG-GCGGGCTTCSEEECCSCSSCCBCCSST----------T--TTCTTCCEEE
T ss_pred ----hhhcccccCCEEECccC-CcCcCch-hhhhccCcCCEEECCCCCcccccchhh----------h--hccCcCCEEE
Confidence 22456788888888885 4555544 345678888888888875433332110 1 2677888888
Q ss_pred ccCCCCccccccCCCCCcccCCCCCCccccCCCCCccccccccccCCCcceeeccCcccceeccCCcccccccCCCccEE
Q 002313 602 LQHLPQLTSSGFDLETPTNTQGSNPGIIAEGDPKDFTSLFNERVVFPSLKKLKLSSINVEKIWLNSFSAIESWGKNLTKL 681 (937)
Q Consensus 602 l~~c~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~l~~~~~~~~~~~~~~l~~L~~L 681 (937)
+.++.-- ..... ......+++|++|++++|.++.++...+ ..+++|++|
T Consensus 357 l~~n~l~-~~~~~--------------------------~~~~~~l~~L~~L~l~~n~l~~~~~~~~----~~l~~L~~L 405 (606)
T 3t6q_A 357 LSHDDIE-TSDCC--------------------------NLQLRNLSHLQSLNLSYNEPLSLKTEAF----KECPQLELL 405 (606)
T ss_dssp CCSSCCC-EEEES--------------------------TTTTTTCTTCCEEECCSCSCEEECTTTT----TTCTTCSEE
T ss_pred CCCCccc-cccCc--------------------------chhcccCCCCCEEECCCCcCCcCCHHHh----cCCccCCeE
Confidence 8876432 21100 0002347888888888887777654332 356788888
Q ss_pred EEeccCCccccchHHHHhhccccceeeeccccchHHHhccCCCCCCCcccccccccceeeeccCccccc-cc-ccCCCCc
Q 002313 682 TVEKCGRLKFLFSSSMVNGLEQLQQLDISHCKSMNEVINTRVGRDDNMIEMVFPKLVSLQLSHLPKLTR-FG-IGDSVEF 759 (937)
Q Consensus 682 ~i~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~~~~~L~~L~i~~c~~l~~-~~-~~~~~~l 759 (937)
++++|... ...+...+..+++|+.|++++|.--...+.. ...+++|++|+++++.--.. ++ ...+..+
T Consensus 406 ~l~~n~l~-~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~---------~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l 475 (606)
T 3t6q_A 406 DLAFTRLK-VKDAQSPFQNLHLLKVLNLSHSLLDISSEQL---------FDGLPALQHLNLQGNHFPKGNIQKTNSLQTL 475 (606)
T ss_dssp ECTTCCEE-CCTTCCTTTTCTTCCEEECTTCCCBTTCTTT---------TTTCTTCCEEECTTCBCGGGEECSSCGGGGC
T ss_pred ECCCCcCC-CcccchhhhCcccCCEEECCCCccCCcCHHH---------HhCCCCCCEEECCCCCCCccccccchhhccC
Confidence 88887533 2223234677888888888877532211111 12467888888887753221 11 1345667
Q ss_pred ccccceeeccCCCceeeccccccccccccccCccCcCccccccccCCCccEEEecCCCCcceeccCCCCcccCCCCcEEE
Q 002313 760 PSLCQLQIACCPNLKIFICSCTEEMSSEKNIHTTQTQPLFDEKVGLPKLEVLRIDGMDNLRKIWHHQLALDSFTKLKDLD 839 (937)
Q Consensus 760 ~~L~~L~i~~C~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~~l~~L~~L~ 839 (937)
++|+.|++++|.--... +..+ ..+++|+.|+++++ .++.+.... +..+++| .|+
T Consensus 476 ~~L~~L~Ls~n~l~~~~---------------~~~~-------~~l~~L~~L~Ls~N-~l~~~~~~~--l~~l~~L-~L~ 529 (606)
T 3t6q_A 476 GRLEILVLSFCDLSSID---------------QHAF-------TSLKMMNHVDLSHN-RLTSSSIEA--LSHLKGI-YLN 529 (606)
T ss_dssp TTCCEEECTTSCCCEEC---------------TTTT-------TTCTTCCEEECCSS-CCCGGGGGG--GTTCCSC-EEE
T ss_pred CCccEEECCCCccCccC---------------hhhh-------ccccCCCEEECCCC-ccCcCChhH--hCccccc-EEE
Confidence 88888888887433211 0111 35688888888887 565554433 3456777 888
Q ss_pred EEcCCCcccccchhHHHhcCCCcEEeecccc
Q 002313 840 VEYCDQLLSIFPSNMLRRLERLEHLAVSECG 870 (937)
Q Consensus 840 i~~C~~L~~~~p~~~l~~l~~L~~L~i~~C~ 870 (937)
+++|. ++. .|...+..+++|+.|+++++|
T Consensus 530 L~~N~-l~~-~~~~~~~~l~~L~~L~l~~N~ 558 (606)
T 3t6q_A 530 LASNH-ISI-ILPSLLPILSQQRTINLRQNP 558 (606)
T ss_dssp CCSSC-CCC-CCGGGHHHHHTSSEEECTTCC
T ss_pred CcCCc-ccc-cCHhhcccCCCCCEEeCCCCC
Confidence 87764 445 344456778888888888876
No 8
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=4e-32 Score=320.79 Aligned_cols=530 Identities=14% Similarity=0.109 Sum_probs=364.9
Q ss_pred cCcchhhhhhccCCCcEEEccCCCCccCCc-cc-CCCccceeeecCCcccccCChhhhcCCCCccEEEecCCcCccc-Cc
Q 002313 198 VADLKEELDKIDEAPTAISIPFRGIYELPE-RL-GFLKLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHSL-PS 274 (937)
Q Consensus 198 ~~~~~~~~~~~~~~l~~l~l~~~~~~~l~~-~~-~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~l-p~ 274 (937)
+.++..+|...+..++++++++|.+..+++ .+ .+++|++|++++|......| ..|+++++|++|++++|.+..+ |.
T Consensus 21 ~~~l~~iP~~l~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~-~~~~~l~~L~~L~Ls~n~l~~~~~~ 99 (606)
T 3t6q_A 21 NLGLNEIPGTLPNSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHE-DTFQSQHRLDTLVLTANPLIFMAET 99 (606)
T ss_dssp TSCCSSCCTTSCTTCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECT-TTTTTCTTCCEEECTTCCCSEECTT
T ss_pred CCCcccCcCCCCCcCcEEEccCCccCcCChhHhccCccceEEECCCCccceeCh-hhccCccccCeeeCCCCcccccChh
Confidence 345667777788899999999999998854 44 79999999999998765445 4479999999999999999876 78
Q ss_pred cccCCCCCCEEEccCCcccCc--ccccCCCCCcEEecccCcCcccC-cccccCccCCEEEecCCCCCcccChhhhcCCCC
Q 002313 275 SLGCLINLRTLSLENCLVVDV--AIIGDLKKLEILSLKHSSIEQLP-REIGQLTCLKLLDLSNCSKLKEIRPNVISNLTR 351 (937)
Q Consensus 275 ~i~~l~~Lr~L~L~~~~~~~l--~~i~~L~~L~~L~L~~~~l~~lp-~~i~~L~~L~~L~l~~~~~l~~lp~~~l~~L~~ 351 (937)
.|+++++|++|++++|.+..+ ..++++++|++|++++|.+..++ +.+..+++|++|++++| .+..+++..++.+++
T Consensus 100 ~~~~l~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~ 178 (606)
T 3t6q_A 100 ALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNN-AIHYLSKEDMSSLQQ 178 (606)
T ss_dssp TTSSCTTCCEEECTTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSS-CCCEECHHHHHTTTT
T ss_pred hhcccccccEeeccccCcccCCcchhccCCcccEEECCCCcccccCcccccCCcccCEEEcccC-cccccChhhhhhhcc
Confidence 899999999999999999886 78999999999999999999873 34555999999999995 578887777999999
Q ss_pred Cc--EEEcCCCcccceecCCCCCChhhhcCCCCCCeEEeecCCCCCCCccc-cccccceeEEEecCcCCCCCCcCCcceE
Q 002313 352 LE--ELYMGNSFTQWKVEGQSNASLGELKQLSRLTTLEVHIPDAQVMPQDL-VFVELERFRICIGDVWSWSDGYETSKTL 428 (937)
Q Consensus 352 L~--~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~-~~~~L~~l~l~~~~~~~~~~~~~~~~~l 428 (937)
|+ +|++++|.+. + .....-...+|+.++++++.. .+... ...++....+..+.. ......
T Consensus 179 L~~l~L~l~~n~l~----~----~~~~~~~~~~L~~L~l~~~~~--~~~~~~~l~~~~l~~l~~~~~-------~~~~~~ 241 (606)
T 3t6q_A 179 ATNLSLNLNGNDIA----G----IEPGAFDSAVFQSLNFGGTQN--LLVIFKGLKNSTIQSLWLGTF-------EDMDDE 241 (606)
T ss_dssp CCSEEEECTTCCCC----E----ECTTTTTTCEEEEEECTTCSC--HHHHHHHTTTCEEEEEECCCC-------TTSCCC
T ss_pred cceeEEecCCCccC----c----cChhHhhhccccccccCCchh--HHHHhhhccccchhheechhh-------cccccc
Confidence 99 8999988765 1 111222335788888887641 11111 112221111111100 000000
Q ss_pred EEecccccchhhhHHHHh--hcccccccccccChhhhhhcccchhhcccCcEEEeecCCceEEEEccCCcccccccccee
Q 002313 429 KLQLNNSTYLGYGMKMLL--KRTEDLHLDELAGFKNVVHELDDEEGFARLRHLHVHNGPEILHILNSDGRVGTFPLLESL 506 (937)
Q Consensus 429 ~l~~~~~~~~~~~~~~~~--~~L~~L~l~~~~~~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~p~L~~L 506 (937)
.+ .......+ .+++.|++.+..........+.. +++|++|+++++. +..+ +.....+++|++|
T Consensus 242 ~i--------~~~~~~~l~~~~L~~L~l~~n~l~~~~~~~~~~---l~~L~~L~l~~n~-l~~l---p~~l~~l~~L~~L 306 (606)
T 3t6q_A 242 DI--------SPAVFEGLCEMSVESINLQKHYFFNISSNTFHC---FSGLQELDLTATH-LSEL---PSGLVGLSTLKKL 306 (606)
T ss_dssp CC--------CGGGGGGGGGSEEEEEECTTCCCSSCCTTTTTT---CTTCSEEECTTSC-CSCC---CSSCCSCTTCCEE
T ss_pred cc--------ChhHhchhhcCceeEEEeecCccCccCHHHhcc---ccCCCEEeccCCc-cCCC---ChhhcccccCCEE
Confidence 00 00111111 26778888776443322233444 8999999999884 3333 2334678999999
Q ss_pred cccccccccccccccccCCCCCccCCCccEEEEecCCCcccccchhHHHhhccccEEEEcccccchhhhccccccccccC
Q 002313 507 FLHNLINLEKVCDGKVRLNEDDKSFSNLRIIKVEGCHRVKHLFPFSLVKNLLQLQKVKVTDCTNLKLIVGKESENSAHKN 586 (937)
Q Consensus 507 ~l~~~~~l~~~~~~~~~~~~~~~~l~~L~~L~l~~C~~L~~l~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~ 586 (937)
+++++. ++.+.. .....+++|++|++++|.....+|+ ..+..+++|++|+++++.-. .+...
T Consensus 307 ~l~~n~-l~~~~~------~~~~~l~~L~~L~l~~n~~~~~~~~-~~~~~l~~L~~L~l~~n~l~-~~~~~--------- 368 (606)
T 3t6q_A 307 VLSANK-FENLCQ------ISASNFPSLTHLSIKGNTKRLELGT-GCLENLENLRELDLSHDDIE-TSDCC--------- 368 (606)
T ss_dssp ECTTCC-CSBGGG------GCGGGCTTCSEEECCSCSSCCBCCS-STTTTCTTCCEEECCSSCCC-EEEES---------
T ss_pred ECccCC-cCcCch------hhhhccCcCCEEECCCCCcccccch-hhhhccCcCCEEECCCCccc-cccCc---------
Confidence 999863 443322 1245789999999999865546654 44678999999999997532 22100
Q ss_pred CccccccccccceeeccCCCCccccccCCCCCcccCCCCCCccccCCCCCccccccccccCCCcceeeccCcccceeccC
Q 002313 587 GSISGVYFRKLHFLKLQHLPQLTSSGFDLETPTNTQGSNPGIIAEGDPKDFTSLFNERVVFPSLKKLKLSSINVEKIWLN 666 (937)
Q Consensus 587 ~~i~~~~~~~L~~L~l~~c~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~l~~~~~~ 666 (937)
......+++|++|++.++.--...+.. ...+++|+.|++++|.++.....
T Consensus 369 -~~~~~~l~~L~~L~l~~n~l~~~~~~~-----------------------------~~~l~~L~~L~l~~n~l~~~~~~ 418 (606)
T 3t6q_A 369 -NLQLRNLSHLQSLNLSYNEPLSLKTEA-----------------------------FKECPQLELLDLAFTRLKVKDAQ 418 (606)
T ss_dssp -TTTTTTCTTCCEEECCSCSCEEECTTT-----------------------------TTTCTTCSEEECTTCCEECCTTC
T ss_pred -chhcccCCCCCEEECCCCcCCcCCHHH-----------------------------hcCCccCCeEECCCCcCCCcccc
Confidence 011137899999999987533221211 23578999999999988765422
Q ss_pred CcccccccCCCccEEEEeccCCccccchHHHHhhccccceeeeccccchHHHhccCCCCCCCcccccccccceeeeccCc
Q 002313 667 SFSAIESWGKNLTKLTVEKCGRLKFLFSSSMVNGLEQLQQLDISHCKSMNEVINTRVGRDDNMIEMVFPKLVSLQLSHLP 746 (937)
Q Consensus 667 ~~~~~~~~l~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~~~~~L~~L~i~~c~ 746 (937)
.. ...+++|++|++++|.. +...+ ..+..+++|++|++++|.--...... ......+++|++|++++|
T Consensus 419 ~~---~~~l~~L~~L~l~~n~l-~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~~------~~~~~~l~~L~~L~Ls~n- 486 (606)
T 3t6q_A 419 SP---FQNLHLLKVLNLSHSLL-DISSE-QLFDGLPALQHLNLQGNHFPKGNIQK------TNSLQTLGRLEILVLSFC- 486 (606)
T ss_dssp CT---TTTCTTCCEEECTTCCC-BTTCT-TTTTTCTTCCEEECTTCBCGGGEECS------SCGGGGCTTCCEEECTTS-
T ss_pred hh---hhCcccCCEEECCCCcc-CCcCH-HHHhCCCCCCEEECCCCCCCcccccc------chhhccCCCccEEECCCC-
Confidence 21 34679999999999954 33322 35678999999999998633211100 011235799999999988
Q ss_pred ccccccccCCCCcccccceeeccCCCceeeccccccccccccccCccCcCccccccccCCCccEEEecCCCCcceeccCC
Q 002313 747 KLTRFGIGDSVEFPSLCQLQIACCPNLKIFICSCTEEMSSEKNIHTTQTQPLFDEKVGLPKLEVLRIDGMDNLRKIWHHQ 826 (937)
Q Consensus 747 ~l~~~~~~~~~~l~~L~~L~i~~C~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~L~~L~l~~c~~l~~l~~~~ 826 (937)
.++.++...+..+++|+.|+++++.--... +.. ...+++| .|+++++ .++.+++..
T Consensus 487 ~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~---------------~~~-------l~~l~~L-~L~L~~N-~l~~~~~~~ 542 (606)
T 3t6q_A 487 DLSSIDQHAFTSLKMMNHVDLSHNRLTSSS---------------IEA-------LSHLKGI-YLNLASN-HISIILPSL 542 (606)
T ss_dssp CCCEECTTTTTTCTTCCEEECCSSCCCGGG---------------GGG-------GTTCCSC-EEECCSS-CCCCCCGGG
T ss_pred ccCccChhhhccccCCCEEECCCCccCcCC---------------hhH-------hCccccc-EEECcCC-cccccCHhh
Confidence 566676677788999999999998433211 111 1367889 9999998 677766543
Q ss_pred CCcccCCCCcEEEEEcCCCcc
Q 002313 827 LALDSFTKLKDLDVEYCDQLL 847 (937)
Q Consensus 827 ~~~~~l~~L~~L~i~~C~~L~ 847 (937)
+..+++|+.|++++|+-.-
T Consensus 543 --~~~l~~L~~L~l~~N~~~c 561 (606)
T 3t6q_A 543 --LPILSQQRTINLRQNPLDC 561 (606)
T ss_dssp --HHHHHTSSEEECTTCCEEC
T ss_pred --cccCCCCCEEeCCCCCccc
Confidence 3457999999999987443
No 9
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.97 E-value=9e-31 Score=307.20 Aligned_cols=496 Identities=20% Similarity=0.226 Sum_probs=252.0
Q ss_pred cchhhhhhccCCCcEEEccCCCCccCCcc-c-CCCccceeeecCCcccccCChhhhcCCCCccEEEecCCcCcccC-ccc
Q 002313 200 DLKEELDKIDEAPTAISIPFRGIYELPER-L-GFLKLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHSLP-SSL 276 (937)
Q Consensus 200 ~~~~~~~~~~~~l~~l~l~~~~~~~l~~~-~-~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~lp-~~i 276 (937)
++..+|...+..++++++++|.+..++.. + .+++|++|++++|... .++...|+++++||+|++++|.+..+| ..|
T Consensus 18 ~l~~ip~~l~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~-~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~ 96 (570)
T 2z63_A 18 NFYKIPDNLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQ-TIEDGAYQSLSHLSTLILTGNPIQSLALGAF 96 (570)
T ss_dssp CCSSCCSSSCSSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCC-EECTTTTTTCTTCCEEECTTCCCCEECTTTT
T ss_pred CccccCCCccccccEEEccCCccCccChhHhhCCCCceEEECCCCcCC-ccCcccccCchhCCEEeCcCCcCCccCHhhh
Confidence 34445555556667777777666665432 2 5666666666666533 344444566666667776666666553 556
Q ss_pred cCCCCCCEEEccCCcccCcc--cccCCCCCcEEecccCcCcc--cCcccccCccCCEEEecCCCCCcccChhhhcCCCCC
Q 002313 277 GCLINLRTLSLENCLVVDVA--IIGDLKKLEILSLKHSSIEQ--LPREIGQLTCLKLLDLSNCSKLKEIRPNVISNLTRL 352 (937)
Q Consensus 277 ~~l~~Lr~L~L~~~~~~~l~--~i~~L~~L~~L~L~~~~l~~--lp~~i~~L~~L~~L~l~~~~~l~~lp~~~l~~L~~L 352 (937)
+++++|++|++++|.+..++ .++++++|++|++++|.++. +|..++++++|++|++++| .+..+++..++.+++|
T Consensus 97 ~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L 175 (570)
T 2z63_A 97 SGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSN-KIQSIYCTDLRVLHQM 175 (570)
T ss_dssp TTCTTCCEEECTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTS-CCCEECGGGGHHHHTC
T ss_pred cCccccccccccccccccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCC-ccceecHHHccchhcc
Confidence 66666666666666666552 46666666666666666653 4666666666666666664 3555554445556555
Q ss_pred ----cEEEcCCCcccceecCCCCCChhhhcCCCCCCeEEeecCCCCCC--Cccc-cccccceeEEEecCcCCCCCCcCCc
Q 002313 353 ----EELYMGNSFTQWKVEGQSNASLGELKQLSRLTTLEVHIPDAQVM--PQDL-VFVELERFRICIGDVWSWSDGYETS 425 (937)
Q Consensus 353 ----~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~--~~~~-~~~~L~~l~l~~~~~~~~~~~~~~~ 425 (937)
++|++++|.+. ......+..+ +|+.|+++++..... +..+ ...+++...+..+.. . .
T Consensus 176 ~~~~~~L~l~~n~l~-------~~~~~~~~~~-~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~-~---~---- 239 (570)
T 2z63_A 176 PLLNLSLDLSLNPMN-------FIQPGAFKEI-RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEF-R---N---- 239 (570)
T ss_dssp TTCCCEEECTTCCCC-------EECTTTTTTC-EEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEEC-C---C----
T ss_pred chhhhhcccCCCCce-------ecCHHHhccC-cceeEecccccccccchhhhhcCccccceeeeccccc-c---C----
Confidence 56666665443 1111222222 455565555421110 0000 011111111100000 0 0
Q ss_pred ceEEEecccccchhhhHHHHhhcccccccccccChhhhhhcccchhhcc--cCcEEEeecCCceEEEEccCCcccccccc
Q 002313 426 KTLKLQLNNSTYLGYGMKMLLKRTEDLHLDELAGFKNVVHELDDEEGFA--RLRHLHVHNGPEILHILNSDGRVGTFPLL 503 (937)
Q Consensus 426 ~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~~--~L~~L~l~~~~~~~~~~~~~~~~~~~p~L 503 (937)
..+++.+.- ..+.. ++ .++.+.+.++.
T Consensus 240 --------------------~~~l~~~~~----------~~~~~---l~~l~l~~l~l~~~~------------------ 268 (570)
T 2z63_A 240 --------------------EGNLEKFDK----------SALEG---LCNLTIEEFRLAYLD------------------ 268 (570)
T ss_dssp --------------------CSSCEECCT----------TTTGG---GGGSEEEEEEEEETT------------------
T ss_pred --------------------chhhhhcch----------hhhcc---ccccchhhhhhhcch------------------
Confidence 000000000 00000 11 12333333221
Q ss_pred ceecccccccccccccccccCCCCCccCCCccEEEEecCCCcccccchhHHHhhccccEEEEcccccchhhhcccccccc
Q 002313 504 ESLFLHNLINLEKVCDGKVRLNEDDKSFSNLRIIKVEGCHRVKHLFPFSLVKNLLQLQKVKVTDCTNLKLIVGKESENSA 583 (937)
Q Consensus 504 ~~L~l~~~~~l~~~~~~~~~~~~~~~~l~~L~~L~l~~C~~L~~l~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~ 583 (937)
.+.... +.....+++|+.|++.+| .++.+|. .+..+ +|++|++.+|.- ..++
T Consensus 269 ---------~~~~~~------~~~~~~l~~L~~L~l~~~-~l~~l~~--~~~~~-~L~~L~l~~n~~-~~l~-------- 320 (570)
T 2z63_A 269 ---------YYLDDI------IDLFNCLTNVSSFSLVSV-TIERVKD--FSYNF-GWQHLELVNCKF-GQFP-------- 320 (570)
T ss_dssp ---------EEESCS------TTTTGGGTTCSEEEEESC-EECSCCB--CCSCC-CCSEEEEESCBC-SSCC--------
T ss_pred ---------hhhhhc------hhhhcCcCcccEEEecCc-cchhhhh--hhccC-CccEEeeccCcc-cccC--------
Confidence 111110 011234455666666553 2444442 22334 566666655432 1211
Q ss_pred ccCCccccccccccceeeccCCCCccccccCCCCCcccCCCCCCccccCCCCCccccccccccCCCcceeeccCccccee
Q 002313 584 HKNGSISGVYFRKLHFLKLQHLPQLTSSGFDLETPTNTQGSNPGIIAEGDPKDFTSLFNERVVFPSLKKLKLSSINVEKI 663 (937)
Q Consensus 584 ~~~~~i~~~~~~~L~~L~l~~c~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~l~~~ 663 (937)
...+++|++|.+.++.....++. ..+++|+.|++++|.++..
T Consensus 321 -------~~~l~~L~~L~l~~n~~~~~~~~-------------------------------~~~~~L~~L~l~~n~l~~~ 362 (570)
T 2z63_A 321 -------TLKLKSLKRLTFTSNKGGNAFSE-------------------------------VDLPSLEFLDLSRNGLSFK 362 (570)
T ss_dssp -------BCBCSSCCEEEEESCBSCCBCCC-------------------------------CBCTTCCEEECCSSCCBEE
T ss_pred -------cccccccCEEeCcCCcccccccc-------------------------------ccCCCCCEEeCcCCccCcc
Confidence 11455666666665542222111 2366777777777765544
Q ss_pred ccCCcccccccCCCccEEEEeccCCccccchHHHHhhccccceeeeccccchHHHhccCCCCCCCcccccccccceeeec
Q 002313 664 WLNSFSAIESWGKNLTKLTVEKCGRLKFLFSSSMVNGLEQLQQLDISHCKSMNEVINTRVGRDDNMIEMVFPKLVSLQLS 743 (937)
Q Consensus 664 ~~~~~~~~~~~l~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~~~~~L~~L~i~ 743 (937)
.... .....+++|++|++++|. ++.+++ .+..+++|+.|++++|.-....+.. ....+++|++|+++
T Consensus 363 ~~~~--~~~~~~~~L~~L~l~~n~-l~~~~~--~~~~l~~L~~L~l~~n~l~~~~~~~--------~~~~l~~L~~L~l~ 429 (570)
T 2z63_A 363 GCCS--QSDFGTTSLKYLDLSFNG-VITMSS--NFLGLEQLEHLDFQHSNLKQMSEFS--------VFLSLRNLIYLDIS 429 (570)
T ss_dssp EEEE--HHHHTCSCCCEEECCSCS-EEEEEE--EEETCTTCCEEECTTSEEESCTTSC--------TTTTCTTCCEEECT
T ss_pred cccc--ccccccCccCEEECCCCc-cccccc--cccccCCCCEEEccCCccccccchh--------hhhcCCCCCEEeCc
Confidence 2000 012255677777777764 333322 1556777777777766422111100 01245677777777
Q ss_pred cCcccccccccCCCCcccccceeeccCCCceeeccccccccccccccCccCcCccccccccCCCccEEEecCCCCcceec
Q 002313 744 HLPKLTRFGIGDSVEFPSLCQLQIACCPNLKIFICSCTEEMSSEKNIHTTQTQPLFDEKVGLPKLEVLRIDGMDNLRKIW 823 (937)
Q Consensus 744 ~c~~l~~~~~~~~~~l~~L~~L~i~~C~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~L~~L~l~~c~~l~~l~ 823 (937)
+|. ++......+..+++|+.|++++|.-.... .+.. ...+++|++|++++| .++.+.
T Consensus 430 ~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~~--------------~p~~-------~~~l~~L~~L~l~~n-~l~~~~ 486 (570)
T 2z63_A 430 HTH-TRVAFNGIFNGLSSLEVLKMAGNSFQENF--------------LPDI-------FTELRNLTFLDLSQC-QLEQLS 486 (570)
T ss_dssp TSC-CEECCTTTTTTCTTCCEEECTTCEEGGGE--------------ECSC-------CTTCTTCCEEECTTS-CCCEEC
T ss_pred CCc-ccccchhhhhcCCcCcEEECcCCcCcccc--------------chhh-------hhcccCCCEEECCCC-ccccCC
Confidence 764 33333445566777888888776432100 0011 135788888888888 566664
Q ss_pred cCCCCcccCCCCcEEEEEcCCCcccccchhHHHhcCCCcEEeecccc
Q 002313 824 HHQLALDSFTKLKDLDVEYCDQLLSIFPSNMLRRLERLEHLAVSECG 870 (937)
Q Consensus 824 ~~~~~~~~l~~L~~L~i~~C~~L~~~~p~~~l~~l~~L~~L~i~~C~ 870 (937)
+.. +..+++|+.|++++| .++. .|...+..+++|++|++++++
T Consensus 487 ~~~--~~~l~~L~~L~l~~n-~l~~-~~~~~~~~l~~L~~L~l~~N~ 529 (570)
T 2z63_A 487 PTA--FNSLSSLQVLNMASN-QLKS-VPDGIFDRLTSLQKIWLHTNP 529 (570)
T ss_dssp TTT--TTTCTTCCEEECCSS-CCSC-CCTTTTTTCTTCCEEECCSSC
T ss_pred hhh--hhcccCCCEEeCCCC-cCCC-CCHHHhhcccCCcEEEecCCc
Confidence 433 345788888888877 4666 344456788888888888865
No 10
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.97 E-value=4.4e-30 Score=313.19 Aligned_cols=522 Identities=18% Similarity=0.206 Sum_probs=340.9
Q ss_pred ccCcchhhhhhccCCCcEEEccCCCCccCC-ccc-CCCccceeeecCCcccccCChhhhcCCCCccEEEecCCcCccc-C
Q 002313 197 NVADLKEELDKIDEAPTAISIPFRGIYELP-ERL-GFLKLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHSL-P 273 (937)
Q Consensus 197 ~~~~~~~~~~~~~~~l~~l~l~~~~~~~l~-~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~l-p 273 (937)
....+..+|. .+.++++|++++|.+..++ ..+ .+++|++|++++|.....+++..|+++++||+|+|++|.+..+ |
T Consensus 12 s~~~L~~vP~-lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p 90 (844)
T 3j0a_A 12 RFCNLTQVPQ-VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHP 90 (844)
T ss_dssp SCCCSSCCCS-SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECT
T ss_pred cCCCCCCCCC-CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCH
Confidence 3455667777 7889999999999998764 344 7899999999999777788667789999999999999999876 8
Q ss_pred ccccCCCCCCEEEccCCcccC--ccc--ccCCCCCcEEecccCcCcccC--cccccCccCCEEEecCCCCCcccChhhhc
Q 002313 274 SSLGCLINLRTLSLENCLVVD--VAI--IGDLKKLEILSLKHSSIEQLP--REIGQLTCLKLLDLSNCSKLKEIRPNVIS 347 (937)
Q Consensus 274 ~~i~~l~~Lr~L~L~~~~~~~--l~~--i~~L~~L~~L~L~~~~l~~lp--~~i~~L~~L~~L~l~~~~~l~~lp~~~l~ 347 (937)
..|+++++|++|++++|.+.. +.. ++++++|++|++++|.+..++ ..++++++|++|++++|. +..+.+..++
T Consensus 91 ~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~-i~~~~~~~l~ 169 (844)
T 3j0a_A 91 DAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQ-IFLVCEHELE 169 (844)
T ss_dssp TSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSC-CCCCCSGGGH
T ss_pred hHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCc-CCeeCHHHcc
Confidence 889999999999999999875 333 899999999999999988763 578999999999999954 5555444477
Q ss_pred CC--CCCcEEEcCCCcccceecCCCCCChh----hhcCCCCCCeEEeecCCCCCC-Cccc----cccccceeEEEecCcC
Q 002313 348 NL--TRLEELYMGNSFTQWKVEGQSNASLG----ELKQLSRLTTLEVHIPDAQVM-PQDL----VFVELERFRICIGDVW 416 (937)
Q Consensus 348 ~L--~~L~~L~l~~~~~~~~~~~~~~~~~~----~l~~l~~L~~L~l~~~~~~~~-~~~~----~~~~L~~l~l~~~~~~ 416 (937)
.+ ++|+.|++++|.+. +.....++ .+... .|+.|+++++..... +..+ ....+..+.+.....-
T Consensus 170 ~l~~~~L~~L~L~~n~l~----~~~~~~~~~~~~~~~~~-~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~ 244 (844)
T 3j0a_A 170 PLQGKTLSFFSLAANSLY----SRVSVDWGKCMNPFRNM-VLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMG 244 (844)
T ss_dssp HHHHCSSCCCEECCSBSC----CCCCCCCCSSSCTTTTC-CBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCB
T ss_pred cccCCccceEECCCCccc----cccccchhhcCCccccC-ceeEEecCCCcCchhHHHHHHhhcCcccccceeccccccc
Confidence 77 89999999988765 21111111 12222 488999988765322 2111 1223333332100000
Q ss_pred CCCCCcCCcceEEEecccccchhhhHHHHhhcccccccccccChhhhhhcccchhhcccCcEEEeecCCceEEEEccCCc
Q 002313 417 SWSDGYETSKTLKLQLNNSTYLGYGMKMLLKRTEDLHLDELAGFKNVVHELDDEEGFARLRHLHVHNGPEILHILNSDGR 496 (937)
Q Consensus 417 ~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~ 496 (937)
. ......... .....+.+ -..++|+.|+++++.-. .+. ...
T Consensus 245 -----------------~----------------~~~~~~l~~--~~~~~f~~-l~~~~L~~L~Ls~n~l~-~~~--~~~ 285 (844)
T 3j0a_A 245 -----------------A----------------GFGFHNIKD--PDQNTFAG-LARSSVRHLDLSHGFVF-SLN--SRV 285 (844)
T ss_dssp -----------------C----------------SSSCSSSTT--GGGTTTTT-TTTSCCCEEECTTCCCC-EEC--SCC
T ss_pred -----------------c----------------cccccccCC--CChhhhhc-cccCCccEEECCCCccc-ccC--hhh
Confidence 0 000000000 00111111 11367888888876433 221 223
Q ss_pred cccccccceecccccccccccccccccCCCCCccCCCccEEEEecCCCcccccchhHHHhhccccEEEEcccccchhhhc
Q 002313 497 VGTFPLLESLFLHNLINLEKVCDGKVRLNEDDKSFSNLRIIKVEGCHRVKHLFPFSLVKNLLQLQKVKVTDCTNLKLIVG 576 (937)
Q Consensus 497 ~~~~p~L~~L~l~~~~~l~~~~~~~~~~~~~~~~l~~L~~L~l~~C~~L~~l~~~~~~~~l~~L~~L~i~~c~~l~~~~~ 576 (937)
...+++|+.|+++++ .+..+.... ...+++|++|+++++ +++.+++ ..+..+++|++|+++++. +..+..
T Consensus 286 ~~~l~~L~~L~L~~n-~i~~~~~~~------~~~l~~L~~L~Ls~N-~l~~~~~-~~~~~l~~L~~L~L~~N~-i~~~~~ 355 (844)
T 3j0a_A 286 FETLKDLKVLNLAYN-KINKIADEA------FYGLDNLQVLNLSYN-LLGELYS-SNFYGLPKVAYIDLQKNH-IAIIQD 355 (844)
T ss_dssp SSSCCCCCEEEEESC-CCCEECTTT------TTTCSSCCEEEEESC-CCSCCCS-CSCSSCTTCCEEECCSCC-CCCCCS
T ss_pred hhcCCCCCEEECCCC-cCCCCChHH------hcCCCCCCEEECCCC-CCCccCH-HHhcCCCCCCEEECCCCC-CCccCh
Confidence 356788888888875 344332221 346788889988884 4666544 345678888899888863 443332
Q ss_pred cccccccccCCccccccccccceeeccCCCCccccccCCCCCcccCCCCCCccccCCCCCccccccccccCCCcceeecc
Q 002313 577 KESENSAHKNGSISGVYFRKLHFLKLQHLPQLTSSGFDLETPTNTQGSNPGIIAEGDPKDFTSLFNERVVFPSLKKLKLS 656 (937)
Q Consensus 577 ~~~~~~~~~~~~i~~~~~~~L~~L~l~~c~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~ 656 (937)
.. + ..+++|+.|++.++. ++.+ ..+++|+.|+++
T Consensus 356 ~~----------~--~~l~~L~~L~Ls~N~-l~~i---------------------------------~~~~~L~~L~l~ 389 (844)
T 3j0a_A 356 QT----------F--KFLEKLQTLDLRDNA-LTTI---------------------------------HFIPSIPDIFLS 389 (844)
T ss_dssp SC----------S--CSCCCCCEEEEETCC-SCCC---------------------------------SSCCSCSEEEEE
T ss_pred hh----------h--cCCCCCCEEECCCCC-CCcc---------------------------------cCCCCcchhccC
Confidence 11 1 267888888888753 2221 136788999999
Q ss_pred CcccceeccCCcccccccCCCccEEEEeccCCccccchHHHHhhccccceeeeccccchHHHhccCCCCCCCcccccccc
Q 002313 657 SINVEKIWLNSFSAIESWGKNLTKLTVEKCGRLKFLFSSSMVNGLEQLQQLDISHCKSMNEVINTRVGRDDNMIEMVFPK 736 (937)
Q Consensus 657 ~c~l~~~~~~~~~~~~~~l~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~~~~~ 736 (937)
+|+++.++ ....+++.|+++++ .++.+.....+..+++|+.|+++++. +..++.. .....+++
T Consensus 390 ~N~l~~l~--------~~~~~l~~L~ls~N-~l~~l~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~-------~~~~~~~~ 452 (844)
T 3j0a_A 390 GNKLVTLP--------KINLTANLIHLSEN-RLENLDILYFLLRVPHLQILILNQNR-FSSCSGD-------QTPSENPS 452 (844)
T ss_dssp SCCCCCCC--------CCCTTCCEEECCSC-CCCSSTTHHHHTTCTTCCEEEEESCC-CCCCCSS-------SSSCSCTT
T ss_pred CCCccccc--------ccccccceeecccC-ccccCchhhhhhcCCccceeeCCCCc-ccccccc-------cccccCCc
Confidence 99888775 23568888998887 45555444556688999999998875 3222111 01123578
Q ss_pred cceeeeccCcccc-----cccccCCCCcccccceeeccCCCceeeccccccccccccccCccCcCccccccccCCCccEE
Q 002313 737 LVSLQLSHLPKLT-----RFGIGDSVEFPSLCQLQIACCPNLKIFICSCTEEMSSEKNIHTTQTQPLFDEKVGLPKLEVL 811 (937)
Q Consensus 737 L~~L~i~~c~~l~-----~~~~~~~~~l~~L~~L~i~~C~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~L~~L 811 (937)
|+.|+++++. ++ ......+.++++|+.|+++++ +++..+ +..+ ..+++|+.|
T Consensus 453 L~~L~Ls~N~-l~~~~~~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~--------------~~~~-------~~l~~L~~L 509 (844)
T 3j0a_A 453 LEQLFLGENM-LQLAWETELCWDVFEGLSHLQVLYLNHN-YLNSLP--------------PGVF-------SHLTALRGL 509 (844)
T ss_dssp CCBCEEESCC-CSSSCCSCCCSSCSSCBCCEECCCCCHH-HHTTCC--------------TTSS-------SSCCSCSEE
T ss_pred cccccCCCCc-cccccccccchhhhcCcccccEEECCCC-cccccC--------------hhHc-------cchhhhhee
Confidence 8999988764 32 222344666788888888876 232111 1111 367899999
Q ss_pred EecCCCCcceeccCCCCcccCCCCcEEEEEcCCCcccccchhHHHhcCCCcEEeecccc
Q 002313 812 RIDGMDNLRKIWHHQLALDSFTKLKDLDVEYCDQLLSIFPSNMLRRLERLEHLAVSECG 870 (937)
Q Consensus 812 ~l~~c~~l~~l~~~~~~~~~l~~L~~L~i~~C~~L~~~~p~~~l~~l~~L~~L~i~~C~ 870 (937)
+++++ .++.++...++ ++|+.|+++++. ++...|. .+++|+.|++++.|
T Consensus 510 ~Ls~N-~l~~l~~~~~~----~~L~~L~Ls~N~-l~~~~~~----~~~~L~~l~l~~Np 558 (844)
T 3j0a_A 510 SLNSN-RLTVLSHNDLP----ANLEILDISRNQ-LLAPNPD----VFVSLSVLDITHNK 558 (844)
T ss_dssp EEESC-CCSSCCCCCCC----SCCCEEEEEEEC-CCCCCSC----CCSSCCEEEEEEEC
T ss_pred ECCCC-CCCccChhhhh----ccccEEECCCCc-CCCCChh----HhCCcCEEEecCCC
Confidence 99988 78888766543 789999998864 5554443 36788999988755
No 11
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.97 E-value=1.8e-30 Score=316.64 Aligned_cols=533 Identities=15% Similarity=0.107 Sum_probs=333.9
Q ss_pred cEEEccCCCCccCCcccCCCccceeeecCCcccccCChhhhcCCCCccEEEecCCc-Cccc-CccccCCCCCCEEEccCC
Q 002313 213 TAISIPFRGIYELPERLGFLKLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFR-FHSL-PSSLGCLINLRTLSLENC 290 (937)
Q Consensus 213 ~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~-~~~l-p~~i~~l~~Lr~L~L~~~ 290 (937)
+.++.+++++..+|. -.+++++|++++|.+....|. .|.++++|++|++++|. +..+ |..|+++++||+|+|++|
T Consensus 7 ~~~dcs~~~L~~vP~--lp~~l~~LdLs~N~i~~i~~~-~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N 83 (844)
T 3j0a_A 7 RIAFYRFCNLTQVPQ--VLNTTERLLLSFNYIRTVTAS-SFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSS 83 (844)
T ss_dssp EEEEESCCCSSCCCS--SCTTCCEEEEESCCCCEECSS-SCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTC
T ss_pred eEEEccCCCCCCCCC--CCCCcCEEECCCCcCCccChh-HCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCC
Confidence 567778889999998 568999999999987654454 47999999999999995 4566 788999999999999999
Q ss_pred cccCc--ccccCCCCCcEEecccCcCcc-cCcc--cccCccCCEEEecCCCCCccc-ChhhhcCCCCCcEEEcCCCcccc
Q 002313 291 LVVDV--AIIGDLKKLEILSLKHSSIEQ-LPRE--IGQLTCLKLLDLSNCSKLKEI-RPNVISNLTRLEELYMGNSFTQW 364 (937)
Q Consensus 291 ~~~~l--~~i~~L~~L~~L~L~~~~l~~-lp~~--i~~L~~L~~L~l~~~~~l~~l-p~~~l~~L~~L~~L~l~~~~~~~ 364 (937)
.+..+ ..|+++++|++|++++|.+.. +|.. ++++++|++|++++|. +..+ +...++++++|++|++++|.+.
T Consensus 84 ~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~-l~~~~~~~~~~~L~~L~~L~Ls~N~i~- 161 (844)
T 3j0a_A 84 KIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQ-IRSLYLHPSFGKLNSLKSIDFSSNQIF- 161 (844)
T ss_dssp CCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCC-CCCCCCCGGGGTCSSCCEEEEESSCCC-
T ss_pred cCcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCc-ccccccchhHhhCCCCCEEECCCCcCC-
Confidence 98865 789999999999999999885 5554 8999999999999965 5554 3345899999999999998765
Q ss_pred eecCCCCCChhhhcCC--CCCCeEEeecCCCCCCCc-cc-cccccceeEEEecCcCCCCCCcCCcceEEEecccccchhh
Q 002313 365 KVEGQSNASLGELKQL--SRLTTLEVHIPDAQVMPQ-DL-VFVELERFRICIGDVWSWSDGYETSKTLKLQLNNSTYLGY 440 (937)
Q Consensus 365 ~~~~~~~~~~~~l~~l--~~L~~L~l~~~~~~~~~~-~~-~~~~L~~l~l~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~ 440 (937)
+ .....+..+ ++|+.|+++.+....... .+ ...+ ..
T Consensus 162 ---~---~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~----------------~~------------------ 201 (844)
T 3j0a_A 162 ---L---VCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMN----------------PF------------------ 201 (844)
T ss_dssp ---C---CCSGGGHHHHHCSSCCCEECCSBSCCCCCCCCCSSSC----------------TT------------------
T ss_pred ---e---eCHHHcccccCCccceEECCCCccccccccchhhcCC----------------cc------------------
Confidence 2 223344444 788999998876543211 10 0000 00
Q ss_pred hHHHHhhcccccccccccChhhhhhcccchhhcccCcEEEeecCCceE--------EEEccCCccccccccceecccccc
Q 002313 441 GMKMLLKRTEDLHLDELAGFKNVVHELDDEEGFARLRHLHVHNGPEIL--------HILNSDGRVGTFPLLESLFLHNLI 512 (937)
Q Consensus 441 ~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~~~L~~L~l~~~~~~~--------~~~~~~~~~~~~p~L~~L~l~~~~ 512 (937)
....|+.|+++++.........+...-..+.++.|.+....... ......+.....++|+.|+++++.
T Consensus 202 ----~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~ 277 (844)
T 3j0a_A 202 ----RNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGF 277 (844)
T ss_dssp ----TTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCC
T ss_pred ----ccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccccCCCChhhhhccccCCccEEECCCCc
Confidence 00135556665543222222222221113567777776321110 000000001124678888888753
Q ss_pred cccccccccccCCCCCccCCCccEEEEecCCCcccccchhHHHhhccccEEEEcccccchhhhccccccccccCCccccc
Q 002313 513 NLEKVCDGKVRLNEDDKSFSNLRIIKVEGCHRVKHLFPFSLVKNLLQLQKVKVTDCTNLKLIVGKESENSAHKNGSISGV 592 (937)
Q Consensus 513 ~l~~~~~~~~~~~~~~~~l~~L~~L~l~~C~~L~~l~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~i~~~ 592 (937)
+..+.. .....+++|+.|+++++ +++.+++ ..+..+++|++|+++++. +..+... ...
T Consensus 278 -l~~~~~------~~~~~l~~L~~L~L~~n-~i~~~~~-~~~~~l~~L~~L~Ls~N~-l~~~~~~------------~~~ 335 (844)
T 3j0a_A 278 -VFSLNS------RVFETLKDLKVLNLAYN-KINKIAD-EAFYGLDNLQVLNLSYNL-LGELYSS------------NFY 335 (844)
T ss_dssp -CCEECS------CCSSSCCCCCEEEEESC-CCCEECT-TTTTTCSSCCEEEEESCC-CSCCCSC------------SCS
T ss_pred -ccccCh------hhhhcCCCCCEEECCCC-cCCCCCh-HHhcCCCCCCEEECCCCC-CCccCHH------------Hhc
Confidence 333211 12346788888988884 4666654 346678888888888864 3322211 112
Q ss_pred cccccceeeccCCCCccccccCCCCCcccCCCCCCccccCCCCCccccccccccCCCcceeeccCcccceeccCCccccc
Q 002313 593 YFRKLHFLKLQHLPQLTSSGFDLETPTNTQGSNPGIIAEGDPKDFTSLFNERVVFPSLKKLKLSSINVEKIWLNSFSAIE 672 (937)
Q Consensus 593 ~~~~L~~L~l~~c~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~l~~~~~~~~~~~~ 672 (937)
.+++|+.|++.++ .+..++... ...+++|+.|++++|.++.++
T Consensus 336 ~l~~L~~L~L~~N-~i~~~~~~~----------------------------~~~l~~L~~L~Ls~N~l~~i~-------- 378 (844)
T 3j0a_A 336 GLPKVAYIDLQKN-HIAIIQDQT----------------------------FKFLEKLQTLDLRDNALTTIH-------- 378 (844)
T ss_dssp SCTTCCEEECCSC-CCCCCCSSC----------------------------SCSCCCCCEEEEETCCSCCCS--------
T ss_pred CCCCCCEEECCCC-CCCccChhh----------------------------hcCCCCCCEEECCCCCCCccc--------
Confidence 6778888888876 344333210 234788888888888877664
Q ss_pred ccCCCccEEEEeccCCccccchHHHHhhccccceeeeccccchHHHhccCCCCCCCcccccccccceeeeccCccccccc
Q 002313 673 SWGKNLTKLTVEKCGRLKFLFSSSMVNGLEQLQQLDISHCKSMNEVINTRVGRDDNMIEMVFPKLVSLQLSHLPKLTRFG 752 (937)
Q Consensus 673 ~~l~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~~~~~L~~L~i~~c~~l~~~~ 752 (937)
.+++|+.|.+++|. ++.++. ...+++.|+++++. +..+... .....+++|++|+++++. ++..+
T Consensus 379 -~~~~L~~L~l~~N~-l~~l~~-----~~~~l~~L~ls~N~-l~~l~~~-------~~~~~l~~L~~L~Ls~N~-l~~~~ 442 (844)
T 3j0a_A 379 -FIPSIPDIFLSGNK-LVTLPK-----INLTANLIHLSENR-LENLDIL-------YFLLRVPHLQILILNQNR-FSSCS 442 (844)
T ss_dssp -SCCSCSEEEEESCC-CCCCCC-----CCTTCCEEECCSCC-CCSSTTH-------HHHTTCTTCCEEEEESCC-CCCCC
T ss_pred -CCCCcchhccCCCC-cccccc-----cccccceeecccCc-cccCchh-------hhhhcCCccceeeCCCCc-ccccc
Confidence 36788888888874 444432 35677888887653 2222110 001146788888887764 33322
Q ss_pred c-cCCCCcccccceeeccCCCceeeccccccccccccccCccCcCccccccccCCCccEEEecCCCCcceeccCCCCccc
Q 002313 753 I-GDSVEFPSLCQLQIACCPNLKIFICSCTEEMSSEKNIHTTQTQPLFDEKVGLPKLEVLRIDGMDNLRKIWHHQLALDS 831 (937)
Q Consensus 753 ~-~~~~~l~~L~~L~i~~C~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~~ 831 (937)
. .....+++|+.|+++++.--.... ....... ...+++|+.|+++++ .++.++... +..
T Consensus 443 ~~~~~~~~~~L~~L~Ls~N~l~~~~~--------------~~~~~~~---~~~l~~L~~L~Ls~N-~l~~~~~~~--~~~ 502 (844)
T 3j0a_A 443 GDQTPSENPSLEQLFLGENMLQLAWE--------------TELCWDV---FEGLSHLQVLYLNHN-YLNSLPPGV--FSH 502 (844)
T ss_dssp SSSSSCSCTTCCBCEEESCCCSSSCC--------------SCCCSSC---SSCBCCEECCCCCHH-HHTTCCTTS--SSS
T ss_pred cccccccCCccccccCCCCccccccc--------------cccchhh---hcCcccccEEECCCC-cccccChhH--ccc
Confidence 2 233446778888887754221000 0000011 135678888888877 677666543 345
Q ss_pred CCCCcEEEEEcCCCcccccchhHHHhcCCCcEEeecccccceeeecccCcccccCCCceeecccCcccccccccc
Q 002313 832 FTKLKDLDVEYCDQLLSIFPSNMLRRLERLEHLAVSECGSIEEIVEISSNCTVETAPGVVFRQLTSLKLHWLPRL 906 (937)
Q Consensus 832 l~~L~~L~i~~C~~L~~~~p~~~l~~l~~L~~L~i~~C~~l~~l~~~~~~~~~~~~~~~~~~sL~~L~i~~c~~L 906 (937)
+++|+.|+++++ +++.+ |...+ .++|+.|+++++ .+...+. ..+++|+.|++.+.|-.
T Consensus 503 l~~L~~L~Ls~N-~l~~l-~~~~~--~~~L~~L~Ls~N-~l~~~~~------------~~~~~L~~l~l~~Np~~ 560 (844)
T 3j0a_A 503 LTALRGLSLNSN-RLTVL-SHNDL--PANLEILDISRN-QLLAPNP------------DVFVSLSVLDITHNKFI 560 (844)
T ss_dssp CCSCSEEEEESC-CCSSC-CCCCC--CSCCCEEEEEEE-CCCCCCS------------CCCSSCCEEEEEEECCC
T ss_pred hhhhheeECCCC-CCCcc-Chhhh--hccccEEECCCC-cCCCCCh------------hHhCCcCEEEecCCCcc
Confidence 788888888776 56663 33232 278888888875 3444332 13567888888776643
No 12
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.97 E-value=3e-30 Score=300.97 Aligned_cols=187 Identities=19% Similarity=0.253 Sum_probs=106.1
Q ss_pred EccCCCCccCCcccCCCccceeeecCCcccccCChhhhcCCCCccEEEecCCcCcccC-ccccCCCCCCEEEccCCcccC
Q 002313 216 SIPFRGIYELPERLGFLKLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHSLP-SSLGCLINLRTLSLENCLVVD 294 (937)
Q Consensus 216 ~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~lp-~~i~~l~~Lr~L~L~~~~~~~ 294 (937)
+.+++.+..+|..+. +++++|++++|.+....| ..|.++++|++|++++|.+..++ ..|+++++|++|++++|.+..
T Consensus 11 ~~~~~~l~~ip~~~~-~~L~~L~Ls~n~l~~~~~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~ 88 (549)
T 2z81_A 11 DGRSRSFTSIPSGLT-AAMKSLDLSFNKITYIGH-GDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSS 88 (549)
T ss_dssp ECTTSCCSSCCSCCC-TTCCEEECCSSCCCEECS-STTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCS
T ss_pred ECCCCccccccccCC-CCccEEECcCCccCccCh-hhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCc
Confidence 444555556665442 566666666665443333 23466666666666666666553 456666666666666666655
Q ss_pred c--ccccCCCCCcEEecccCcCcc--cCcccccCccCCEEEecCCCCCcccChhhhcCCCCCcEEEcCCCcccceecCCC
Q 002313 295 V--AIIGDLKKLEILSLKHSSIEQ--LPREIGQLTCLKLLDLSNCSKLKEIRPNVISNLTRLEELYMGNSFTQWKVEGQS 370 (937)
Q Consensus 295 l--~~i~~L~~L~~L~L~~~~l~~--lp~~i~~L~~L~~L~l~~~~~l~~lp~~~l~~L~~L~~L~l~~~~~~~~~~~~~ 370 (937)
+ ..++++++|++|++++|.++. .|..++++++|++|++++|..+..+|...++++++|++|++++|.+.
T Consensus 89 ~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~------- 161 (549)
T 2z81_A 89 LSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLR------- 161 (549)
T ss_dssp CCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCC-------
T ss_pred cCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCccc-------
Confidence 4 236666666666666666653 34556666666666666655455565444666666666666665443
Q ss_pred CCChhhhcCCCCCCeEEeecCCCCCCCccc--cccccceeEEE
Q 002313 371 NASLGELKQLSRLTTLEVHIPDAQVMPQDL--VFVELERFRIC 411 (937)
Q Consensus 371 ~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~--~~~~L~~l~l~ 411 (937)
...+..+..+++|+.|+++.+....++... ..++|+.+.+.
T Consensus 162 ~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~ 204 (549)
T 2z81_A 162 NYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELR 204 (549)
T ss_dssp EECTTTTTTCSEEEEEEEECSBSTTHHHHHHHSTTTBSEEEEE
T ss_pred ccChhhhhccccCceEecccCcccccchhhHhhcccccEEEcc
Confidence 123344555666666666665544333322 23444444444
No 13
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.97 E-value=4.6e-29 Score=292.68 Aligned_cols=510 Identities=19% Similarity=0.209 Sum_probs=320.3
Q ss_pred CcEEEccCCCCccCCcccCCCccceeeecCCcccccCChhhhcCCCCccEEEecCCcCccc-CccccCCCCCCEEEccCC
Q 002313 212 PTAISIPFRGIYELPERLGFLKLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHSL-PSSLGCLINLRTLSLENC 290 (937)
Q Consensus 212 l~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~l-p~~i~~l~~Lr~L~L~~~ 290 (937)
.+.++-++..+..+|..+ .+++++|++++|... .++...|.++++|++|++++|.+..+ |..|+++++||+|++++|
T Consensus 9 ~~~~~c~~~~l~~ip~~l-~~~l~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n 86 (570)
T 2z63_A 9 NITYQCMELNFYKIPDNL-PFSTKNLDLSFNPLR-HLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGN 86 (570)
T ss_dssp TTEEECCSSCCSSCCSSS-CSSCCEEECCSCCCC-EECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTC
T ss_pred CcEEEeCCCCccccCCCc-cccccEEEccCCccC-ccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCC
Confidence 456777777888888765 368999999999865 44445579999999999999999988 567999999999999999
Q ss_pred cccCc--ccccCCCCCcEEecccCcCcccCc-ccccCccCCEEEecCCCCCcc--cChhhhcCCCCCcEEEcCCCcccce
Q 002313 291 LVVDV--AIIGDLKKLEILSLKHSSIEQLPR-EIGQLTCLKLLDLSNCSKLKE--IRPNVISNLTRLEELYMGNSFTQWK 365 (937)
Q Consensus 291 ~~~~l--~~i~~L~~L~~L~L~~~~l~~lp~-~i~~L~~L~~L~l~~~~~l~~--lp~~~l~~L~~L~~L~l~~~~~~~~ 365 (937)
.+..+ ..|+++++|++|++++|.++.+|. .++++++|++|++++|. +.. +|.. ++++++|++|++++|.+.
T Consensus 87 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~-l~~~~lp~~-~~~l~~L~~L~l~~n~l~-- 162 (570)
T 2z63_A 87 PIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNL-IQSFKLPEY-FSNLTNLEHLDLSSNKIQ-- 162 (570)
T ss_dssp CCCEECTTTTTTCTTCCEEECTTSCCCCSTTCSCTTCTTCCEEECCSSC-CCCCCCCGG-GGGCTTCCEEECTTSCCC--
T ss_pred cCCccCHhhhcCccccccccccccccccCCCccccccccccEEecCCCc-cceecChhh-hcccCCCCEEeCcCCccc--
Confidence 98866 679999999999999999999886 69999999999999965 554 5665 899999999999998765
Q ss_pred ecCCCCCChhhhcCCCCC-CeEEeecCCCCCCCccc-cccccceeEEEecCcCCCCCCcCCcceEEEecccccchhhhHH
Q 002313 366 VEGQSNASLGELKQLSRL-TTLEVHIPDAQVMPQDL-VFVELERFRICIGDVWSWSDGYETSKTLKLQLNNSTYLGYGMK 443 (937)
Q Consensus 366 ~~~~~~~~~~~l~~l~~L-~~L~l~~~~~~~~~~~~-~~~~L~~l~l~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~ 443 (937)
+.....++.+.+++.+ ..++++.+.+..++... ...+|+.+.+..+.
T Consensus 163 --~~~~~~~~~l~~L~~~~~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~----------------------------- 211 (570)
T 2z63_A 163 --SIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNF----------------------------- 211 (570)
T ss_dssp --EECGGGGHHHHTCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCC-----------------------------
T ss_pred --eecHHHccchhccchhhhhcccCCCCceecCHHHhccCcceeEeccccc-----------------------------
Confidence 2112334444444332 68999888776655432 22244444443110
Q ss_pred HHhhcccccccccccChhhhhhcccchhhcccCcEEEeecCCceEEEEccCCccccccccceeccccccccccccccccc
Q 002313 444 MLLKRTEDLHLDELAGFKNVVHELDDEEGFARLRHLHVHNGPEILHILNSDGRVGTFPLLESLFLHNLINLEKVCDGKVR 523 (937)
Q Consensus 444 ~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~l~~~~~~~~~ 523 (937)
.........+. ++++++.+.+... .. .....++.+.-.....+
T Consensus 212 --------------~~~~~~~~~~~---~l~~l~~~~l~~~----~~-------~~~~~l~~~~~~~~~~l--------- 254 (570)
T 2z63_A 212 --------------DSLNVMKTCIQ---GLAGLEVHRLVLG----EF-------RNEGNLEKFDKSALEGL--------- 254 (570)
T ss_dssp --------------SCTTHHHHHHH---TTTTCEEEEEEEE----EC-------CCCSSCEECCTTTTGGG---------
T ss_pred --------------ccccchhhhhc---Cccccceeeeccc----cc-------cCchhhhhcchhhhccc---------
Confidence 00011111121 2444444443210 00 00111111111110000
Q ss_pred CCCCCccCCCccEEEEecCCCcccccchhHHHhhccccEEEEcccccchhhhccccccccccCCccccccccccceeecc
Q 002313 524 LNEDDKSFSNLRIIKVEGCHRVKHLFPFSLVKNLLQLQKVKVTDCTNLKLIVGKESENSAHKNGSISGVYFRKLHFLKLQ 603 (937)
Q Consensus 524 ~~~~~~~l~~L~~L~l~~C~~L~~l~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~i~~~~~~~L~~L~l~ 603 (937)
.. -.++.+.+.++..+....+ ..+..+++|++|++.++. ++.++.. + ..+ +|++|.+.
T Consensus 255 -----~~-l~l~~l~l~~~~~~~~~~~-~~~~~l~~L~~L~l~~~~-l~~l~~~-----------~--~~~-~L~~L~l~ 312 (570)
T 2z63_A 255 -----CN-LTIEEFRLAYLDYYLDDII-DLFNCLTNVSSFSLVSVT-IERVKDF-----------S--YNF-GWQHLELV 312 (570)
T ss_dssp -----GG-SEEEEEEEEETTEEESCST-TTTGGGTTCSEEEEESCE-ECSCCBC-----------C--SCC-CCSEEEEE
T ss_pred -----cc-cchhhhhhhcchhhhhhch-hhhcCcCcccEEEecCcc-chhhhhh-----------h--ccC-CccEEeec
Confidence 01 1366777777655554433 456678999999998874 3333311 1 134 78888888
Q ss_pred CCCCccccccCCCCCcccCCCCCCccccCCCCCccccccccccCCCcceeeccCcccceeccCCcccccccCCCccEEEE
Q 002313 604 HLPQLTSSGFDLETPTNTQGSNPGIIAEGDPKDFTSLFNERVVFPSLKKLKLSSINVEKIWLNSFSAIESWGKNLTKLTV 683 (937)
Q Consensus 604 ~c~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~l~~~~~~~~~~~~~~l~~L~~L~i 683 (937)
+|.- ..++. ..+++|+.|++++|.+..... ...+++|++|++
T Consensus 313 ~n~~-~~l~~-------------------------------~~l~~L~~L~l~~n~~~~~~~------~~~~~~L~~L~l 354 (570)
T 2z63_A 313 NCKF-GQFPT-------------------------------LKLKSLKRLTFTSNKGGNAFS------EVDLPSLEFLDL 354 (570)
T ss_dssp SCBC-SSCCB-------------------------------CBCSSCCEEEEESCBSCCBCC------CCBCTTCCEEEC
T ss_pred cCcc-cccCc-------------------------------ccccccCEEeCcCCccccccc------cccCCCCCEEeC
Confidence 7642 23222 247888888888886544331 246788888888
Q ss_pred eccCCccccc-hHHHHhhccccceeeeccccchHHHhccCCCCCCCcccccccccceeeeccCcccccccccCCCCcccc
Q 002313 684 EKCGRLKFLF-SSSMVNGLEQLQQLDISHCKSMNEVINTRVGRDDNMIEMVFPKLVSLQLSHLPKLTRFGIGDSVEFPSL 762 (937)
Q Consensus 684 ~~c~~l~~l~-~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~~~~~L~~L~i~~c~~l~~~~~~~~~~l~~L 762 (937)
++|. ++... ....+..+++|+.|++++|. +..++.. ...+++|++|++.++.-....+...+..+++|
T Consensus 355 ~~n~-l~~~~~~~~~~~~~~~L~~L~l~~n~-l~~~~~~---------~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L 423 (570)
T 2z63_A 355 SRNG-LSFKGCCSQSDFGTTSLKYLDLSFNG-VITMSSN---------FLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNL 423 (570)
T ss_dssp CSSC-CBEEEEEEHHHHTCSCCCEEECCSCS-EEEEEEE---------EETCTTCCEEECTTSEEESCTTSCTTTTCTTC
T ss_pred cCCc-cCccccccccccccCccCEEECCCCc-ccccccc---------ccccCCCCEEEccCCccccccchhhhhcCCCC
Confidence 8875 33221 12356778888888888875 2222211 12467888888877653333333455667788
Q ss_pred cceeeccCCCceeeccccccccccccccCccCcCccccccccCCCccEEEecCCCCcc--eeccCCCCcccCCCCcEEEE
Q 002313 763 CQLQIACCPNLKIFICSCTEEMSSEKNIHTTQTQPLFDEKVGLPKLEVLRIDGMDNLR--KIWHHQLALDSFTKLKDLDV 840 (937)
Q Consensus 763 ~~L~i~~C~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~L~~L~l~~c~~l~--~l~~~~~~~~~l~~L~~L~i 840 (937)
+.|++++|.-.... +..+ ..+++|++|++++|. ++ .++. .+..+++|+.|++
T Consensus 424 ~~L~l~~n~l~~~~---------------~~~~-------~~l~~L~~L~l~~n~-l~~~~~p~---~~~~l~~L~~L~l 477 (570)
T 2z63_A 424 IYLDISHTHTRVAF---------------NGIF-------NGLSSLEVLKMAGNS-FQENFLPD---IFTELRNLTFLDL 477 (570)
T ss_dssp CEEECTTSCCEECC---------------TTTT-------TTCTTCCEEECTTCE-EGGGEECS---CCTTCTTCCEEEC
T ss_pred CEEeCcCCcccccc---------------hhhh-------hcCCcCcEEECcCCc-Cccccchh---hhhcccCCCEEEC
Confidence 88888777533211 0111 356788888888774 33 3432 2445678888888
Q ss_pred EcCCCcccccchhHHHhcCCCcEEeecccccceeeecccCcccccCCCceeecccCcccccccc
Q 002313 841 EYCDQLLSIFPSNMLRRLERLEHLAVSECGSIEEIVEISSNCTVETAPGVVFRQLTSLKLHWLP 904 (937)
Q Consensus 841 ~~C~~L~~~~p~~~l~~l~~L~~L~i~~C~~l~~l~~~~~~~~~~~~~~~~~~sL~~L~i~~c~ 904 (937)
++|. ++.+.|. .+..+++|++|++++| .++.++.. ....+++|+.|++.+++
T Consensus 478 ~~n~-l~~~~~~-~~~~l~~L~~L~l~~n-~l~~~~~~---------~~~~l~~L~~L~l~~N~ 529 (570)
T 2z63_A 478 SQCQ-LEQLSPT-AFNSLSSLQVLNMASN-QLKSVPDG---------IFDRLTSLQKIWLHTNP 529 (570)
T ss_dssp TTSC-CCEECTT-TTTTCTTCCEEECCSS-CCSCCCTT---------TTTTCTTCCEEECCSSC
T ss_pred CCCc-cccCChh-hhhcccCCCEEeCCCC-cCCCCCHH---------HhhcccCCcEEEecCCc
Confidence 7764 4443343 3567778888888776 45554421 11246777777777765
No 14
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.96 E-value=2.7e-28 Score=284.54 Aligned_cols=469 Identities=15% Similarity=0.142 Sum_probs=284.4
Q ss_pred CcchhhhhhccCCCcEEEccCCCCccCCc-cc-CCCccceeeecCCcccccCChhhhcCCCCccEEEecCCcCcccCcc-
Q 002313 199 ADLKEELDKIDEAPTAISIPFRGIYELPE-RL-GFLKLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHSLPSS- 275 (937)
Q Consensus 199 ~~~~~~~~~~~~~l~~l~l~~~~~~~l~~-~~-~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~lp~~- 275 (937)
..+..+|....+.++++++++|.+..++. .+ .+++|++|++.+|.+.. +++..|.++++|++|++++|.+..+|..
T Consensus 15 ~~l~~ip~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~-~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~ 93 (549)
T 2z81_A 15 RSFTSIPSGLTAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINT-IEGDAFYSLGSLEHLDLSDNHLSSLSSSW 93 (549)
T ss_dssp SCCSSCCSCCCTTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCE-ECTTTTTTCTTCCEEECTTSCCCSCCHHH
T ss_pred CccccccccCCCCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCc-cChhhccccccCCEEECCCCccCccCHHH
Confidence 45666676667899999999999998754 44 79999999999998664 4445579999999999999999988765
Q ss_pred ccCCCCCCEEEccCCcccCc---ccccCCCCCcEEecccCc-CcccC-cccccCccCCEEEecCCCCCcccChhhhcCCC
Q 002313 276 LGCLINLRTLSLENCLVVDV---AIIGDLKKLEILSLKHSS-IEQLP-REIGQLTCLKLLDLSNCSKLKEIRPNVISNLT 350 (937)
Q Consensus 276 i~~l~~Lr~L~L~~~~~~~l---~~i~~L~~L~~L~L~~~~-l~~lp-~~i~~L~~L~~L~l~~~~~l~~lp~~~l~~L~ 350 (937)
|+++++|++|++++|.+..+ ..++++++|++|++++|. +..+| ..++++++|++|++++|. +....+..+++++
T Consensus 94 ~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~l~~l~ 172 (549)
T 2z81_A 94 FGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALS-LRNYQSQSLKSIR 172 (549)
T ss_dssp HTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETT-CCEECTTTTTTCS
T ss_pred hccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCc-ccccChhhhhccc
Confidence 99999999999999998753 679999999999999997 77887 579999999999999965 5554444489999
Q ss_pred CCcEEEcCCCcccceecCCCCCChhhhcCCCCCCeEEeecCCCCCCCc---c--ccccccceeEEEecCcCCCCCCcCCc
Q 002313 351 RLEELYMGNSFTQWKVEGQSNASLGELKQLSRLTTLEVHIPDAQVMPQ---D--LVFVELERFRICIGDVWSWSDGYETS 425 (937)
Q Consensus 351 ~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~---~--~~~~~L~~l~l~~~~~~~~~~~~~~~ 425 (937)
+|++|+++++... ......+..+++|+.|+++++.....+. . ....+|+.+.+....
T Consensus 173 ~L~~L~l~~n~~~-------~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~----------- 234 (549)
T 2z81_A 173 DIHHLTLHLSESA-------FLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSV----------- 234 (549)
T ss_dssp EEEEEEEECSBST-------THHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCE-----------
T ss_pred cCceEecccCccc-------ccchhhHhhcccccEEEccCCccccccccccchhhhhhcccceeccccc-----------
Confidence 9999999887543 1111223568899999999987765421 1 123455555543221
Q ss_pred ceEEEecccccch----hhhHHHHhhcccccccccccChhh--h----hhcccchhhcccCcEEEeecCCceEEE--Ecc
Q 002313 426 KTLKLQLNNSTYL----GYGMKMLLKRTEDLHLDELAGFKN--V----VHELDDEEGFARLRHLHVHNGPEILHI--LNS 493 (937)
Q Consensus 426 ~~l~l~~~~~~~~----~~~~~~~~~~L~~L~l~~~~~~~~--~----~~~l~~~~~~~~L~~L~l~~~~~~~~~--~~~ 493 (937)
.... .......+++++.+++.++..... . ...+ ..+++|+.|.+.++...... ...
T Consensus 235 ---------l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~---~~l~~L~~L~l~~~~i~~~~~~~~l 302 (549)
T 2z81_A 235 ---------LTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVV---SELGKVETVTIRRLHIPQFYLFYDL 302 (549)
T ss_dssp ---------EEHHHHHHHHGGGGGCTTCCEEEEESCEEECCSCCCCCTTTCC---CCCTTCCEEEEESCBCSCGGGSCCC
T ss_pred ---------cchhHHHHHHHHhhhhccccccccccccccccccccccchhhh---hhhcccccccccccccchhhhcccc
Confidence 1000 000011223444444443321100 0 0011 12445555555443210000 000
Q ss_pred CCccccccccceecccccccccccccccccCCCCCccCCCccEEEEecCCCcccccc-hhHHHhhccccEEEEcccccch
Q 002313 494 DGRVGTFPLLESLFLHNLINLEKVCDGKVRLNEDDKSFSNLRIIKVEGCHRVKHLFP-FSLVKNLLQLQKVKVTDCTNLK 572 (937)
Q Consensus 494 ~~~~~~~p~L~~L~l~~~~~l~~~~~~~~~~~~~~~~l~~L~~L~l~~C~~L~~l~~-~~~~~~l~~L~~L~i~~c~~l~ 572 (937)
......+++|++|.++++ .++.+.... ...+++|++|+++++.--..+|+ ...+..+++|++|++++|. ++
T Consensus 303 ~~~~~~~~~L~~L~l~~n-~l~~ip~~~------~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~-l~ 374 (549)
T 2z81_A 303 STVYSLLEKVKRITVENS-KVFLVPCSF------SQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNH-LR 374 (549)
T ss_dssp CHHHHHSTTCCEEEEESS-CCCCCCHHH------HHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSC-CC
T ss_pred hhhhhhcccceEEEeccC-ccccCCHHH------HhcCccccEEEccCCccccccccchhhhhccccCcEEEccCCc-cc
Confidence 000012344555555553 222221100 01345566666655432221211 0112345556666665542 22
Q ss_pred hhhccccccccccCCccccccccccceeeccCCCCccccccCCCCCcccCCCCCCccccCCCCCccccccccccCCCcce
Q 002313 573 LIVGKESENSAHKNGSISGVYFRKLHFLKLQHLPQLTSSGFDLETPTNTQGSNPGIIAEGDPKDFTSLFNERVVFPSLKK 652 (937)
Q Consensus 573 ~~~~~~~~~~~~~~~~i~~~~~~~L~~L~l~~c~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~ 652 (937)
.+.... -....+++|++|+++++ +++.++.. ...+++|+.
T Consensus 375 ~~~~~~----------~~~~~l~~L~~L~Ls~N-~l~~lp~~-----------------------------~~~~~~L~~ 414 (549)
T 2z81_A 375 SMQKTG----------EILLTLKNLTSLDISRN-TFHPMPDS-----------------------------CQWPEKMRF 414 (549)
T ss_dssp CHHHHH----------HHGGGCTTCCEEECTTC-CCCCCCSC-----------------------------CCCCTTCCE
T ss_pred ccccch----------hhhhcCCCCCEEECCCC-CCccCChh-----------------------------hcccccccE
Confidence 221000 00114566666666665 33333322 124677888
Q ss_pred eeccCcccceeccCCcccccccCCCccEEEEeccCCccccchHHHHhhccccceeeeccccchHHHhccCCCCCCCcccc
Q 002313 653 LKLSSINVEKIWLNSFSAIESWGKNLTKLTVEKCGRLKFLFSSSMVNGLEQLQQLDISHCKSMNEVINTRVGRDDNMIEM 732 (937)
Q Consensus 653 L~l~~c~l~~~~~~~~~~~~~~l~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~ 732 (937)
|++++|.++.++. ...++|++|++++| +++.++ ..+++|++|++++|. ++.++.. .
T Consensus 415 L~Ls~N~l~~l~~-------~~~~~L~~L~Ls~N-~l~~~~-----~~l~~L~~L~Ls~N~-l~~ip~~----------~ 470 (549)
T 2z81_A 415 LNLSSTGIRVVKT-------CIPQTLEVLDVSNN-NLDSFS-----LFLPRLQELYISRNK-LKTLPDA----------S 470 (549)
T ss_dssp EECTTSCCSCCCT-------TSCTTCSEEECCSS-CCSCCC-----CCCTTCCEEECCSSC-CSSCCCG----------G
T ss_pred EECCCCCcccccc-------hhcCCceEEECCCC-Chhhhc-----ccCChhcEEECCCCc-cCcCCCc----------c
Confidence 8888887776652 22357888888887 444432 467888888887773 4444432 2
Q ss_pred cccccceeeeccCcccccccccCCCCcccccceeeccCCC
Q 002313 733 VFPKLVSLQLSHLPKLTRFGIGDSVEFPSLCQLQIACCPN 772 (937)
Q Consensus 733 ~~~~L~~L~i~~c~~l~~~~~~~~~~l~~L~~L~i~~C~~ 772 (937)
.+++|++|+++++ .++.++...+..+++|+.|++++++-
T Consensus 471 ~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~l~~N~~ 509 (549)
T 2z81_A 471 LFPVLLVMKISRN-QLKSVPDGIFDRLTSLQKIWLHTNPW 509 (549)
T ss_dssp GCTTCCEEECCSS-CCCCCCTTGGGGCTTCCEEECCSSCB
T ss_pred cCccCCEEecCCC-ccCCcCHHHHhcCcccCEEEecCCCc
Confidence 4678888888775 66777666677788888888887663
No 15
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.95 E-value=4.3e-27 Score=272.07 Aligned_cols=143 Identities=20% Similarity=0.274 Sum_probs=121.2
Q ss_pred cEEEccCCCCccCCcccCCCccceeeecCCcccccCChhhhcCCCCccEEEecCCcCccc-CccccCCCCCCEEEccCCc
Q 002313 213 TAISIPFRGIYELPERLGFLKLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHSL-PSSLGCLINLRTLSLENCL 291 (937)
Q Consensus 213 ~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~l-p~~i~~l~~Lr~L~L~~~~ 291 (937)
++++++++.+..+|..+. +++++|++++|.+. .++...|.++++|++|++++|.+..+ |..|+++++|++|++++|.
T Consensus 3 ~~l~ls~n~l~~ip~~~~-~~L~~L~Ls~n~i~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~ 80 (520)
T 2z7x_B 3 FLVDRSKNGLIHVPKDLS-QKTTILNISQNYIS-ELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNK 80 (520)
T ss_dssp CEEECTTSCCSSCCCSCC-TTCSEEECCSSCCC-CCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSC
T ss_pred ceEecCCCCccccccccc-ccccEEECCCCccc-ccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCc
Confidence 688999999999998776 89999999998865 45555579999999999999999877 7889999999999999999
Q ss_pred ccCcccccCCCCCcEEecccCcCcc--cCcccccCccCCEEEecCCCCCcccChhhhcCCCCC--cEEEcCCCcc
Q 002313 292 VVDVAIIGDLKKLEILSLKHSSIEQ--LPREIGQLTCLKLLDLSNCSKLKEIRPNVISNLTRL--EELYMGNSFT 362 (937)
Q Consensus 292 ~~~l~~i~~L~~L~~L~L~~~~l~~--lp~~i~~L~~L~~L~l~~~~~l~~lp~~~l~~L~~L--~~L~l~~~~~ 362 (937)
++.++.. .+++|++|++++|.++. +|..++++++|++|++++|. +.. ..++.+++| ++|++++|.+
T Consensus 81 l~~lp~~-~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~-l~~---~~~~~l~~L~L~~L~l~~n~l 150 (520)
T 2z7x_B 81 LVKISCH-PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTH-LEK---SSVLPIAHLNISKVLLVLGET 150 (520)
T ss_dssp CCEEECC-CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESS-CCG---GGGGGGTTSCEEEEEEEECTT
T ss_pred eeecCcc-ccCCccEEeccCCccccccchhhhccCCcceEEEecCcc-cch---hhccccccceeeEEEeecccc
Confidence 9877554 89999999999999886 56889999999999999854 544 236778888 9999988865
No 16
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.95 E-value=3.4e-26 Score=272.39 Aligned_cols=535 Identities=18% Similarity=0.155 Sum_probs=289.8
Q ss_pred cEEEccCCCCccCCcccCCCccceeeecCCcccccCChhhhcCCCCccEEEecCCcCcccCc-cccCCCCCCEEEccCCc
Q 002313 213 TAISIPFRGIYELPERLGFLKLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHSLPS-SLGCLINLRTLSLENCL 291 (937)
Q Consensus 213 ~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~lp~-~i~~l~~Lr~L~L~~~~ 291 (937)
+.++-++.++..+|..+ .+++++|++++|.+. .+|...|.++++||+|+|++|.++.+|+ .|+++++|++|+|++|+
T Consensus 34 ~~~~c~~~~l~~vP~~l-p~~~~~LdLs~N~i~-~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~ 111 (635)
T 4g8a_A 34 ITYQCMELNFYKIPDNL-PFSTKNLDLSFNPLR-HLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP 111 (635)
T ss_dssp TEEECTTSCCSSCCSSS-CTTCCEEECTTSCCC-EECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCC
T ss_pred CEEECCCCCcCccCCCC-CcCCCEEEeeCCCCC-CCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCc
Confidence 34455555666777655 246777777777643 5555557888888888888888887744 57788888888888888
Q ss_pred ccCc--ccccCCCCCcEEecccCcCcccCc-ccccCccCCEEEecCCCCCcccC-hhhhcCCCCCcEEEcCCCcccceec
Q 002313 292 VVDV--AIIGDLKKLEILSLKHSSIEQLPR-EIGQLTCLKLLDLSNCSKLKEIR-PNVISNLTRLEELYMGNSFTQWKVE 367 (937)
Q Consensus 292 ~~~l--~~i~~L~~L~~L~L~~~~l~~lp~-~i~~L~~L~~L~l~~~~~l~~lp-~~~l~~L~~L~~L~l~~~~~~~~~~ 367 (937)
++.+ ..|+++++|++|++++|.++.+|. .++++++|++|++++|. +..++ +..++.+++|++|++++|.+.
T Consensus 112 l~~l~~~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~-l~~~~~~~~~~~l~~L~~L~L~~N~l~---- 186 (635)
T 4g8a_A 112 IQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNL-IQSFKLPEYFSNLTNLEHLDLSSNKIQ---- 186 (635)
T ss_dssp CCEECGGGGTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSC-CCCCCCCGGGGGCTTCCEEECCSSCCC----
T ss_pred CCCCCHHHhcCCCCCCEEECCCCcCCCCChhhhhcCcccCeeccccCc-cccCCCchhhccchhhhhhcccCcccc----
Confidence 7765 457888888888888888887775 47888888888888754 44332 233677888888888877654
Q ss_pred CCCCCChhhhcCCCC-CCeEEeecCCCCCCCccc-cccccceeEEEecCcCCCCCCcCCcceEEEecccccchhhhHHHH
Q 002313 368 GQSNASLGELKQLSR-LTTLEVHIPDAQVMPQDL-VFVELERFRICIGDVWSWSDGYETSKTLKLQLNNSTYLGYGMKML 445 (937)
Q Consensus 368 ~~~~~~~~~l~~l~~-L~~L~l~~~~~~~~~~~~-~~~~L~~l~l~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~ 445 (937)
+.....+..+.+++. ...++++.+.+..++... ....+..+.+.. +.. ........
T Consensus 187 ~~~~~~l~~L~~l~~~~~~~~ls~n~l~~i~~~~~~~~~~~~l~l~~--------------------n~~--~~~~~~~~ 244 (635)
T 4g8a_A 187 SIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRN--------------------NFD--SLNVMKTC 244 (635)
T ss_dssp EECGGGGHHHHTCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEES--------------------CCS--SHHHHHHH
T ss_pred ccccccccchhhhhhhhhhhhcccCcccccCcccccchhhhhhhhhc--------------------ccc--cccccchh
Confidence 222233444444442 235666666554443322 111222222211 000 00000001
Q ss_pred hhcccccccccccChhhhhhcccchhhcccCcEEEee--cCCceEEEEcc-CCccccccccceecccccccccccccccc
Q 002313 446 LKRTEDLHLDELAGFKNVVHELDDEEGFARLRHLHVH--NGPEILHILNS-DGRVGTFPLLESLFLHNLINLEKVCDGKV 522 (937)
Q Consensus 446 ~~~L~~L~l~~~~~~~~~~~~l~~~~~~~~L~~L~l~--~~~~~~~~~~~-~~~~~~~p~L~~L~l~~~~~l~~~~~~~~ 522 (937)
+.. ++.++...+. .......+... .........+....+.....-.. . ..
T Consensus 245 ~~~------------------------l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~~l~~~~~~~~-~-~~- 297 (635)
T 4g8a_A 245 IQG------------------------LAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYY-L-DG- 297 (635)
T ss_dssp HHT------------------------TTTCEEEEEEEECCTTSCCCSCCCTTTTGGGGGSEEEEEEEECCCSC-E-EE-
T ss_pred hcC------------------------Ccccccccccccccccccccccccccccccccchhhhhhhhhhhccc-c-cc-
Confidence 111 2222222221 11000000000 00001111121111111100000 0 00
Q ss_pred cCCCCCccCCCccEEEEecCCCcccccchhHHHhhccccEEEEcccccchhhhccccccccccCCccccccccccceeec
Q 002313 523 RLNEDDKSFSNLRIIKVEGCHRVKHLFPFSLVKNLLQLQKVKVTDCTNLKLIVGKESENSAHKNGSISGVYFRKLHFLKL 602 (937)
Q Consensus 523 ~~~~~~~~l~~L~~L~l~~C~~L~~l~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~i~~~~~~~L~~L~l 602 (937)
.......+.+++.+.+.++. +..++. +.....|+.|++.++..- .+. ...++.|+.+.+
T Consensus 298 -~~~~~~~~~~l~~l~~~~~~-~~~~~~---~~~~~~L~~L~l~~~~~~-~~~---------------~~~l~~L~~l~l 356 (635)
T 4g8a_A 298 -IIDLFNCLTNVSSFSLVSVT-IERVKD---FSYNFGWQHLELVNCKFG-QFP---------------TLKLKSLKRLTF 356 (635)
T ss_dssp -CTTTTGGGTTCSEEEEESCE-EEECGG---GGSCCCCSEEEEESCEES-SCC---------------CCBCTTCCEEEE
T ss_pred -hhhhhhhhcccccccccccc-cccccc---cccchhhhhhhccccccc-CcC---------------cccchhhhhccc
Confidence 00112356678888877743 333332 234567888888876421 111 125666777766
Q ss_pred cCCCCccccccCCCCCcccCCCCCCccccCCCCCccccccccccCCCcceeeccCcccceeccCCcccccccCCCccEEE
Q 002313 603 QHLPQLTSSGFDLETPTNTQGSNPGIIAEGDPKDFTSLFNERVVFPSLKKLKLSSINVEKIWLNSFSAIESWGKNLTKLT 682 (937)
Q Consensus 603 ~~c~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~l~~~~~~~~~~~~~~l~~L~~L~ 682 (937)
.+...-.... ...+++|+.|+++++.+........ ....+.+|+.|+
T Consensus 357 ~~n~~~~~~~-------------------------------~~~l~~L~~L~ls~n~l~~~~~~~~--~~~~~~~L~~L~ 403 (635)
T 4g8a_A 357 TSNKGGNAFS-------------------------------EVDLPSLEFLDLSRNGLSFKGCCSQ--SDFGTISLKYLD 403 (635)
T ss_dssp ESCCSCCBCC-------------------------------CCBCTTCCEEECCSSCCBEEEECCH--HHHSCSCCCEEE
T ss_pred ccccCCCCcc-------------------------------cccccccccchhhcccccccccccc--chhhhhhhhhhh
Confidence 5543211100 1247888899988886654432111 122456788888
Q ss_pred EeccCCccccchHHHHhhccccceeeeccccchHHHhccCCCCCCCcccccccccceeeeccCcccccccccCCCCcccc
Q 002313 683 VEKCGRLKFLFSSSMVNGLEQLQQLDISHCKSMNEVINTRVGRDDNMIEMVFPKLVSLQLSHLPKLTRFGIGDSVEFPSL 762 (937)
Q Consensus 683 i~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~~~~~L~~L~i~~c~~l~~~~~~~~~~l~~L 762 (937)
+..+..... . ..+..+++|+.+++.++......+.. ....+++++.+++..+ .+.......+..+++|
T Consensus 404 ~~~~~~~~~-~--~~~~~l~~L~~l~l~~~~~~~~~~~~--------~~~~l~~l~~l~ls~n-~l~~~~~~~~~~~~~L 471 (635)
T 4g8a_A 404 LSFNGVITM-S--SNFLGLEQLEHLDFQHSNLKQMSEFS--------VFLSLRNLIYLDISHT-HTRVAFNGIFNGLSSL 471 (635)
T ss_dssp CCSCSEEEE-C--SCCTTCTTCCEEECTTSEEESTTSSC--------TTTTCTTCCEEECTTS-CCEECCTTTTTTCTTC
T ss_pred ccccccccc-c--ccccccccccchhhhhcccccccccc--------cccccccccccccccc-ccccccccccccchhh
Confidence 877754332 1 23457788888888776544433221 1123466777777554 4444555556667778
Q ss_pred cceeeccCCCceeeccccccccccccccCccCcCccccccccCCCccEEEecCCCCcceeccCCCCcccCCCCcEEEEEc
Q 002313 763 CQLQIACCPNLKIFICSCTEEMSSEKNIHTTQTQPLFDEKVGLPKLEVLRIDGMDNLRKIWHHQLALDSFTKLKDLDVEY 842 (937)
Q Consensus 763 ~~L~i~~C~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~~l~~L~~L~i~~ 842 (937)
+.|+++++....... +..+ ..+++|++|++++| +++.+++.. +..+++|+.|++++
T Consensus 472 ~~L~Ls~N~~~~~~~--------------~~~~-------~~l~~L~~L~Ls~N-~L~~l~~~~--f~~l~~L~~L~Ls~ 527 (635)
T 4g8a_A 472 EVLKMAGNSFQENFL--------------PDIF-------TELRNLTFLDLSQC-QLEQLSPTA--FNSLSSLQVLNMSH 527 (635)
T ss_dssp CEEECTTCEEGGGEE--------------CSCC-------TTCTTCCEEECTTS-CCCEECTTT--TTTCTTCCEEECTT
T ss_pred hhhhhhhcccccccC--------------chhh-------hhccccCEEECCCC-ccCCcChHH--HcCCCCCCEEECCC
Confidence 888887765443211 0111 35678888888887 677776543 34578888888876
Q ss_pred CCCcccccchhHHHhcCCCcEEeecccccceeeecccCcccccCCCceeecccCcccccccc
Q 002313 843 CDQLLSIFPSNMLRRLERLEHLAVSECGSIEEIVEISSNCTVETAPGVVFRQLTSLKLHWLP 904 (937)
Q Consensus 843 C~~L~~~~p~~~l~~l~~L~~L~i~~C~~l~~l~~~~~~~~~~~~~~~~~~sL~~L~i~~c~ 904 (937)
+ +++.+ +...+..+++|+.|+++++ .+..+++.. -...+++|++|++.++|
T Consensus 528 N-~l~~l-~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~--------l~~l~~~L~~L~L~~Np 578 (635)
T 4g8a_A 528 N-NFFSL-DTFPYKCLNSLQVLDYSLN-HIMTSKKQE--------LQHFPSSLAFLNLTQND 578 (635)
T ss_dssp S-CCCBC-CCGGGTTCTTCCEEECTTS-CCCBCCSSC--------TTCCCTTCCEEECTTCC
T ss_pred C-cCCCC-ChhHHhCCCCCCEEECCCC-cCCCCCHHH--------HHhhhCcCCEEEeeCCC
Confidence 5 56663 4445677888888888874 455544311 01123578888887654
No 17
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.95 E-value=1.2e-26 Score=276.12 Aligned_cols=524 Identities=20% Similarity=0.192 Sum_probs=292.9
Q ss_pred cCcchhhhhhccCCCcEEEccCCCCccCCcc-c-CCCccceeeecCCcccccCChhhhcCCCCccEEEecCCcCcccCc-
Q 002313 198 VADLKEELDKIDEAPTAISIPFRGIYELPER-L-GFLKLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHSLPS- 274 (937)
Q Consensus 198 ~~~~~~~~~~~~~~l~~l~l~~~~~~~l~~~-~-~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~lp~- 274 (937)
+.++..+|..++..+++|++++|.+..+++. + .+++|++|++++|.+. .+++.+|+++++|++|+|++|.++.+|.
T Consensus 40 ~~~l~~vP~~lp~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~-~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~ 118 (635)
T 4g8a_A 40 ELNFYKIPDNLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQ-TIEDGAYQSLSHLSTLILTGNPIQSLALG 118 (635)
T ss_dssp TSCCSSCCSSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCC-EECTTTTTTCTTCCEEECTTCCCCEECGG
T ss_pred CCCcCccCCCCCcCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCC-CcChhHhcCCCCCCEEEccCCcCCCCCHH
Confidence 4567778888889999999999999999864 4 7999999999999754 6777778999999999999999999975
Q ss_pred cccCCCCCCEEEccCCcccCc--ccccCCCCCcEEecccCcCcc--cCcccccCccCCEEEecCCCCCcccChhhhcCCC
Q 002313 275 SLGCLINLRTLSLENCLVVDV--AIIGDLKKLEILSLKHSSIEQ--LPREIGQLTCLKLLDLSNCSKLKEIRPNVISNLT 350 (937)
Q Consensus 275 ~i~~l~~Lr~L~L~~~~~~~l--~~i~~L~~L~~L~L~~~~l~~--lp~~i~~L~~L~~L~l~~~~~l~~lp~~~l~~L~ 350 (937)
.|+++++|++|++++|.++.+ ..|+++++|++|++++|.++. +|..++.+++|++|++++| .+..++...++.+.
T Consensus 119 ~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~l~~L~ 197 (635)
T 4g8a_A 119 AFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSN-KIQSIYCTDLRVLH 197 (635)
T ss_dssp GGTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSS-CCCEECGGGGHHHH
T ss_pred HhcCCCCCCEEECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCc-cccccccccccchh
Confidence 589999999999999999987 469999999999999999874 5788999999999999995 57777766676665
Q ss_pred CCc----EEEcCCCcccceecCCCCCChhhhcCCCCCCeEEeecCCCCC-CCcc-c-cccccceeEEEecCcCCCCCCcC
Q 002313 351 RLE----ELYMGNSFTQWKVEGQSNASLGELKQLSRLTTLEVHIPDAQV-MPQD-L-VFVELERFRICIGDVWSWSDGYE 423 (937)
Q Consensus 351 ~L~----~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~-~~~~-~-~~~~L~~l~l~~~~~~~~~~~~~ 423 (937)
+++ .++++.+.+.. ..........+..+++..+.... .... + ....++...+.........
T Consensus 198 ~l~~~~~~~~ls~n~l~~--------i~~~~~~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~---- 265 (635)
T 4g8a_A 198 QMPLLNLSLDLSLNPMNF--------IQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEG---- 265 (635)
T ss_dssp TCTTCCCEEECTTCCCCE--------ECTTTTTTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSC----
T ss_pred hhhhhhhhhhcccCcccc--------cCcccccchhhhhhhhhcccccccccchhhcCCccccccccccccccccc----
Confidence 544 56666665431 11111222234566666553211 0000 0 1222222222111100000
Q ss_pred CcceEEEecccccchhhhHHHHhhcccccccccccChhhhhhcccchhhcccCcEEEeecCCceEEEEccCCcccccccc
Q 002313 424 TSKTLKLQLNNSTYLGYGMKMLLKRTEDLHLDELAGFKNVVHELDDEEGFARLRHLHVHNGPEILHILNSDGRVGTFPLL 503 (937)
Q Consensus 424 ~~~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~p~L 503 (937)
.++... ...+ .....+....+..................++++
T Consensus 266 ------------------------~l~~~~----------~~~~---~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l 308 (635)
T 4g8a_A 266 ------------------------NLEKFD----------KSAL---EGLCNLTIEEFRLAYLDYYLDGIIDLFNCLTNV 308 (635)
T ss_dssp ------------------------CCSCCC----------TTTT---GGGGGSEEEEEEEECCCSCEEECTTTTGGGTTC
T ss_pred ------------------------cccccc----------cccc---ccccchhhhhhhhhhhcccccchhhhhhhhccc
Confidence 000000 0000 012222222222111100000111111233344
Q ss_pred ceecccccccccccccccccCCCCCccCCCccEEEEecCCCcccccchhHHHhhccccEEEEcccccchhhhcccccccc
Q 002313 504 ESLFLHNLINLEKVCDGKVRLNEDDKSFSNLRIIKVEGCHRVKHLFPFSLVKNLLQLQKVKVTDCTNLKLIVGKESENSA 583 (937)
Q Consensus 504 ~~L~l~~~~~l~~~~~~~~~~~~~~~~l~~L~~L~l~~C~~L~~l~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~ 583 (937)
+.+.+.++... .+.. .....+|+.|.+.+|. +..++. ..++.|+.+.+.+...-..
T Consensus 309 ~~l~~~~~~~~-~~~~--------~~~~~~L~~L~l~~~~-~~~~~~----~~l~~L~~l~l~~n~~~~~---------- 364 (635)
T 4g8a_A 309 SSFSLVSVTIE-RVKD--------FSYNFGWQHLELVNCK-FGQFPT----LKLKSLKRLTFTSNKGGNA---------- 364 (635)
T ss_dssp SEEEEESCEEE-ECGG--------GGSCCCCSEEEEESCE-ESSCCC----CBCTTCCEEEEESCCSCCB----------
T ss_pred ccccccccccc-cccc--------cccchhhhhhhccccc-ccCcCc----ccchhhhhcccccccCCCC----------
Confidence 44444433211 1100 1233455555555532 223222 1244555555544321110
Q ss_pred ccCCccccccccccceeeccCCCCccccccCCCCCcccCCCCCCccccCCCCCccccccccccCCCcceeeccCccccee
Q 002313 584 HKNGSISGVYFRKLHFLKLQHLPQLTSSGFDLETPTNTQGSNPGIIAEGDPKDFTSLFNERVVFPSLKKLKLSSINVEKI 663 (937)
Q Consensus 584 ~~~~~i~~~~~~~L~~L~l~~c~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~l~~~ 663 (937)
.....+++|+.|.+.+...-...... ......++|+.|++..+....+
T Consensus 365 -----~~~~~l~~L~~L~ls~n~l~~~~~~~---------------------------~~~~~~~~L~~L~~~~~~~~~~ 412 (635)
T 4g8a_A 365 -----FSEVDLPSLEFLDLSRNGLSFKGCCS---------------------------QSDFGTISLKYLDLSFNGVITM 412 (635)
T ss_dssp -----CCCCBCTTCCEEECCSSCCBEEEECC---------------------------HHHHSCSCCCEEECCSCSEEEE
T ss_pred -----cccccccccccchhhccccccccccc---------------------------cchhhhhhhhhhhccccccccc
Confidence 01114555565555543211100000 0012345666666666644444
Q ss_pred ccCCcccccccCCCccEEEEeccCCccccchHHHHhhccccceeeeccccchHHHhccCCCCCCCcccccccccceeeec
Q 002313 664 WLNSFSAIESWGKNLTKLTVEKCGRLKFLFSSSMVNGLEQLQQLDISHCKSMNEVINTRVGRDDNMIEMVFPKLVSLQLS 743 (937)
Q Consensus 664 ~~~~~~~~~~~l~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~~~~~L~~L~i~ 743 (937)
+.. ...+++|+.+++.++...... +...+..+++++.++++.+. +..+... ....+++|+.|+++
T Consensus 413 ~~~-----~~~l~~L~~l~l~~~~~~~~~-~~~~~~~l~~l~~l~ls~n~-l~~~~~~--------~~~~~~~L~~L~Ls 477 (635)
T 4g8a_A 413 SSN-----FLGLEQLEHLDFQHSNLKQMS-EFSVFLSLRNLIYLDISHTH-TRVAFNG--------IFNGLSSLEVLKMA 477 (635)
T ss_dssp CSC-----CTTCTTCCEEECTTSEEESTT-SSCTTTTCTTCCEEECTTSC-CEECCTT--------TTTTCTTCCEEECT
T ss_pred ccc-----ccccccccchhhhhccccccc-cccccccccccccccccccc-ccccccc--------ccccchhhhhhhhh
Confidence 322 224566666666665443322 22345566667777775543 2111111 11235677777777
Q ss_pred cCcccccccccCCCCcccccceeeccCCCceeeccccccccccccccCccCcCccccccccCCCccEEEecCCCCcceec
Q 002313 744 HLPKLTRFGIGDSVEFPSLCQLQIACCPNLKIFICSCTEEMSSEKNIHTTQTQPLFDEKVGLPKLEVLRIDGMDNLRKIW 823 (937)
Q Consensus 744 ~c~~l~~~~~~~~~~l~~L~~L~i~~C~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~L~~L~l~~c~~l~~l~ 823 (937)
++.....+....+..+++|+.|++++|. ++... +..+ ..+++|++|+++++ +++.++
T Consensus 478 ~N~~~~~~~~~~~~~l~~L~~L~Ls~N~-L~~l~--------------~~~f-------~~l~~L~~L~Ls~N-~l~~l~ 534 (635)
T 4g8a_A 478 GNSFQENFLPDIFTELRNLTFLDLSQCQ-LEQLS--------------PTAF-------NSLSSLQVLNMSHN-NFFSLD 534 (635)
T ss_dssp TCEEGGGEECSCCTTCTTCCEEECTTSC-CCEEC--------------TTTT-------TTCTTCCEEECTTS-CCCBCC
T ss_pred hcccccccCchhhhhccccCEEECCCCc-cCCcC--------------hHHH-------cCCCCCCEEECCCC-cCCCCC
Confidence 7766666555666677777777777763 33211 1111 35678888888877 677765
Q ss_pred cCCCCcccCCCCcEEEEEcCCCcccccchhHHHhc-CCCcEEeecccc
Q 002313 824 HHQLALDSFTKLKDLDVEYCDQLLSIFPSNMLRRL-ERLEHLAVSECG 870 (937)
Q Consensus 824 ~~~~~~~~l~~L~~L~i~~C~~L~~~~p~~~l~~l-~~L~~L~i~~C~ 870 (937)
... +..+++|+.|+++++ +++.+.|. .+..+ ++|+.|++++.|
T Consensus 535 ~~~--~~~l~~L~~L~Ls~N-~l~~~~~~-~l~~l~~~L~~L~L~~Np 578 (635)
T 4g8a_A 535 TFP--YKCLNSLQVLDYSLN-HIMTSKKQ-ELQHFPSSLAFLNLTQND 578 (635)
T ss_dssp CGG--GTTCTTCCEEECTTS-CCCBCCSS-CTTCCCTTCCEEECTTCC
T ss_pred hhH--HhCCCCCCEEECCCC-cCCCCCHH-HHHhhhCcCCEEEeeCCC
Confidence 543 345778888888665 45554443 34555 678888887643
No 18
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.95 E-value=1.5e-26 Score=267.63 Aligned_cols=460 Identities=15% Similarity=0.152 Sum_probs=273.6
Q ss_pred ceeeecCCcccccCChhhhcCCCCccEEEecCCcCcccC-ccccCCCCCCEEEccCCcccCc--ccccCCCCCcEEeccc
Q 002313 235 KLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHSLP-SSLGCLINLRTLSLENCLVVDV--AIIGDLKKLEILSLKH 311 (937)
Q Consensus 235 ~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~lp-~~i~~l~~Lr~L~L~~~~~~~l--~~i~~L~~L~~L~L~~ 311 (937)
++|+++++... .+|..++ ++|++|++++|.+..+| ..|.++++|++|++++|.++.+ ..|+++++|++|++++
T Consensus 3 ~~l~ls~n~l~-~ip~~~~---~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~ 78 (520)
T 2z7x_B 3 FLVDRSKNGLI-HVPKDLS---QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSH 78 (520)
T ss_dssp CEEECTTSCCS-SCCCSCC---TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCS
T ss_pred ceEecCCCCcc-ccccccc---ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCC
Confidence 57888888765 6887653 89999999999999885 6799999999999999998876 6899999999999999
Q ss_pred CcCcccCcccccCccCCEEEecCCCCCcc--cChhhhcCCCCCcEEEcCCCcccceecCCCCCChhhhcCCCCC--CeEE
Q 002313 312 SSIEQLPREIGQLTCLKLLDLSNCSKLKE--IRPNVISNLTRLEELYMGNSFTQWKVEGQSNASLGELKQLSRL--TTLE 387 (937)
Q Consensus 312 ~~l~~lp~~i~~L~~L~~L~l~~~~~l~~--lp~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L--~~L~ 387 (937)
|.++.+|.. .+++|++|++++|. +.. +|.. ++++++|++|++++|.+. . ..+..+++| +.|+
T Consensus 79 N~l~~lp~~--~l~~L~~L~L~~N~-l~~~~~p~~-~~~l~~L~~L~L~~n~l~-------~---~~~~~l~~L~L~~L~ 144 (520)
T 2z7x_B 79 NKLVKISCH--PTVNLKHLDLSFNA-FDALPICKE-FGNMSQLKFLGLSTTHLE-------K---SSVLPIAHLNISKVL 144 (520)
T ss_dssp SCCCEEECC--CCCCCSEEECCSSC-CSSCCCCGG-GGGCTTCCEEEEEESSCC-------G---GGGGGGTTSCEEEEE
T ss_pred CceeecCcc--ccCCccEEeccCCc-cccccchhh-hccCCcceEEEecCcccc-------h---hhccccccceeeEEE
Confidence 999999977 89999999999965 555 4454 899999999999988664 1 234455555 8999
Q ss_pred eecCCC--CC-CCccccccccc--eeEEEecCcCCCCCCcCCcceEEEecccccchhhhHHHHhhcccccccccccChhh
Q 002313 388 VHIPDA--QV-MPQDLVFVELE--RFRICIGDVWSWSDGYETSKTLKLQLNNSTYLGYGMKMLLKRTEDLHLDELAGFKN 462 (937)
Q Consensus 388 l~~~~~--~~-~~~~~~~~~L~--~l~l~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~ 462 (937)
++++.. .. .|..+ .+++ .+.+ ++.+......
T Consensus 145 l~~n~l~~~~~~~~~l--~~l~~~~l~l------------------------------------------~l~~n~~~~~ 180 (520)
T 2z7x_B 145 LVLGETYGEKEDPEGL--QDFNTESLHI------------------------------------------VFPTNKEFHF 180 (520)
T ss_dssp EEECTTTTSSCCTTTT--TTCCEEEEEE------------------------------------------ECCSSSCCCC
T ss_pred eecccccccccccccc--cccccceEEE------------------------------------------EeccCcchhh
Confidence 988765 21 12111 1111 1111 1111100000
Q ss_pred hh-hcccchhhcccCcEEEeecCCceEEEEccCCccccccccceecccccccccccccccccCCCCCccCCCccEEEEec
Q 002313 463 VV-HELDDEEGFARLRHLHVHNGPEILHILNSDGRVGTFPLLESLFLHNLINLEKVCDGKVRLNEDDKSFSNLRIIKVEG 541 (937)
Q Consensus 463 ~~-~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~l~~~~~~~~~~~~~~~~l~~L~~L~l~~ 541 (937)
.. ..+ ..+++|+.|+++++.... . +..+... .+ ....+++|+.|++.+
T Consensus 181 ~~~~~~---~~l~~L~~L~l~~n~~~~----------~-----------~~~~~~~----~~---~l~~l~~L~~L~l~~ 229 (520)
T 2z7x_B 181 ILDVSV---KTVANLELSNIKCVLEDN----------K-----------CSYFLSI----LA---KLQTNPKLSNLTLNN 229 (520)
T ss_dssp CCCCCC---TTCSEEEECCEEECCSTT----------T-----------THHHHHH----HH---GGGGCTTCCEEEEEE
T ss_pred hhhhhh---hcccceeecccccccccc----------c-----------cceeecc----hh---hhccccchhhccccc
Confidence 00 011 224555555555442100 0 0000000 00 123456677777666
Q ss_pred CCCcccccchhHH--HhhccccEEEEcccccchhhhccccccccccCCccccccccccceeeccCCCCccccccCCCCCc
Q 002313 542 CHRVKHLFPFSLV--KNLLQLQKVKVTDCTNLKLIVGKESENSAHKNGSISGVYFRKLHFLKLQHLPQLTSSGFDLETPT 619 (937)
Q Consensus 542 C~~L~~l~~~~~~--~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~i~~~~~~~L~~L~l~~c~~L~~~~~~~~~~~ 619 (937)
+. +......... ...++|++|++++|.--..++..... .....+++|+.+++.++.. .++..
T Consensus 230 ~~-l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~--------~~~~~l~~L~~l~l~~n~~--~~p~~----- 293 (520)
T 2z7x_B 230 IE-TTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFD--------YSGTSLKALSIHQVVSDVF--GFPQS----- 293 (520)
T ss_dssp EE-EEHHHHHHHHHHHHTSSCSEEEEEEEEEESCCCCCCCC--------CCSCCCCEEEEEEEEECCC--CSCTH-----
T ss_pred cc-cCHHHHHHHHHHhhhCcccEEEeecccccCccccchhh--------cccccCceeEeccccccce--ecchh-----
Confidence 43 2211000100 12346777777776432222211000 0001455666666655432 22100
Q ss_pred ccCCCCCCccccCCCCCccccccccccCCCcceeeccCcccceeccCCcccccccCCCccEEEEeccCCccccchHHHHh
Q 002313 620 NTQGSNPGIIAEGDPKDFTSLFNERVVFPSLKKLKLSSINVEKIWLNSFSAIESWGKNLTKLTVEKCGRLKFLFSSSMVN 699 (937)
Q Consensus 620 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~l~~~~~~~~~~~~~~l~~L~~L~i~~c~~l~~l~~~~~~~ 699 (937)
.+.....-++|+.|++++|++..++. +..+++|++|++++|.--..++ ..+.
T Consensus 294 --------------------~~~~~~~~~~L~~L~l~~n~l~~~~~------~~~l~~L~~L~Ls~n~l~~~~~--~~~~ 345 (520)
T 2z7x_B 294 --------------------YIYEIFSNMNIKNFTVSGTRMVHMLC------PSKISPFLHLDFSNNLLTDTVF--ENCG 345 (520)
T ss_dssp --------------------HHHHHHHTCCCSEEEEESSCCCCCCC------CSSCCCCCEEECCSSCCCTTTT--TTCC
T ss_pred --------------------hhhcccccCceeEEEcCCCccccccc------hhhCCcccEEEeECCccChhhh--hhhc
Confidence 00000011457777777776655431 1356777888887774332222 2456
Q ss_pred hccccceeeeccccch--HHHhccCCCCCCCcccccccccceeeeccCcccccccccCCCCcccccceeeccCCCceeec
Q 002313 700 GLEQLQQLDISHCKSM--NEVINTRVGRDDNMIEMVFPKLVSLQLSHLPKLTRFGIGDSVEFPSLCQLQIACCPNLKIFI 777 (937)
Q Consensus 700 ~l~~L~~L~i~~c~~l--~~~~~~~~~~~~~~~~~~~~~L~~L~i~~c~~l~~~~~~~~~~l~~L~~L~i~~C~~l~~~~ 777 (937)
.+++|++|++++|.-- ..++.. ...+++|++|+++++.--..++...+..+++|+.|++++|.--...+
T Consensus 346 ~l~~L~~L~L~~N~l~~l~~~~~~---------~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~ 416 (520)
T 2z7x_B 346 HLTELETLILQMNQLKELSKIAEM---------TTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIF 416 (520)
T ss_dssp CCSSCCEEECCSSCCCBHHHHHHH---------HTTCTTCCEEECCSSCCBCCGGGCSCCCCTTCCEEECCSSCCCGGGG
T ss_pred cCCCCCEEEccCCccCccccchHH---------HhhCCCCCEEECCCCcCCcccccchhccCccCCEEECcCCCCCcchh
Confidence 7777888888776422 122211 12467888888877653333666666677888888888775321100
Q ss_pred cccccccccccccCccCcCccccccccCCCccEEEecCCCCcceeccCCCCcccCCCCcEEEEEcCCCcccccchhHHHh
Q 002313 778 CSCTEEMSSEKNIHTTQTQPLFDEKVGLPKLEVLRIDGMDNLRKIWHHQLALDSFTKLKDLDVEYCDQLLSIFPSNMLRR 857 (937)
Q Consensus 778 ~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~~l~~L~~L~i~~C~~L~~~~p~~~l~~ 857 (937)
. ...++|+.|++++| .++.++.. ...+++|+.|++++| .++. +|...+..
T Consensus 417 ------------------~------~l~~~L~~L~Ls~N-~l~~ip~~---~~~l~~L~~L~L~~N-~l~~-l~~~~~~~ 466 (520)
T 2z7x_B 417 ------------------R------CLPPRIKVLDLHSN-KIKSIPKQ---VVKLEALQELNVASN-QLKS-VPDGIFDR 466 (520)
T ss_dssp ------------------G------SCCTTCCEEECCSS-CCCCCCGG---GGGCTTCCEEECCSS-CCCC-CCTTTTTT
T ss_pred ------------------h------hhcccCCEEECCCC-cccccchh---hhcCCCCCEEECCCC-cCCc-cCHHHhcc
Confidence 0 01268899999988 67777654 236789999999887 4666 56655778
Q ss_pred cCCCcEEeecccc
Q 002313 858 LERLEHLAVSECG 870 (937)
Q Consensus 858 l~~L~~L~i~~C~ 870 (937)
+++|++|++++++
T Consensus 467 l~~L~~L~l~~N~ 479 (520)
T 2z7x_B 467 LTSLQKIWLHTNP 479 (520)
T ss_dssp CTTCCEEECCSSC
T ss_pred CCcccEEECcCCC
Confidence 8899999998865
No 19
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.95 E-value=9.8e-27 Score=277.52 Aligned_cols=365 Identities=15% Similarity=0.136 Sum_probs=218.8
Q ss_pred CcCcccCccccCCCCCCEEEccCCcccC------------------c-cccc--CCCCCcEEecccCcC-cccCcccccC
Q 002313 267 FRFHSLPSSLGCLINLRTLSLENCLVVD------------------V-AIIG--DLKKLEILSLKHSSI-EQLPREIGQL 324 (937)
Q Consensus 267 ~~~~~lp~~i~~l~~Lr~L~L~~~~~~~------------------l-~~i~--~L~~L~~L~L~~~~l-~~lp~~i~~L 324 (937)
|.+..+|..|+++++|++|+|++|.++. + ..++ ++++|++|++++|.+ ..+|..++++
T Consensus 435 N~L~~IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L 514 (876)
T 4ecn_A 435 NRITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDL 514 (876)
T ss_dssp CEEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGC
T ss_pred CcccchhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCC
Confidence 3444467777777777777777777665 4 5555 777777777777753 4667777777
Q ss_pred ccCCEEEecCCCCCcc--cChhhhcCCC-------CCcEEEcCCCcccceecCCCCCChh--hhcCCCCCCeEEeecCCC
Q 002313 325 TCLKLLDLSNCSKLKE--IRPNVISNLT-------RLEELYMGNSFTQWKVEGQSNASLG--ELKQLSRLTTLEVHIPDA 393 (937)
Q Consensus 325 ~~L~~L~l~~~~~l~~--lp~~~l~~L~-------~L~~L~l~~~~~~~~~~~~~~~~~~--~l~~l~~L~~L~l~~~~~ 393 (937)
++|++|++++|..+.. +|.. +++++ +|++|++++|.+. ..+. .+.++++|+.|+++++.+
T Consensus 515 ~~L~~L~Ls~N~~lsg~~iP~~-i~~L~~~~~~l~~L~~L~Ls~N~L~--------~ip~~~~l~~L~~L~~L~Ls~N~l 585 (876)
T 4ecn_A 515 PELQSLNIACNRGISAAQLKAD-WTRLADDEDTGPKIQIFYMGYNNLE--------EFPASASLQKMVKLGLLDCVHNKV 585 (876)
T ss_dssp SSCCEEECTTCTTSCHHHHHHH-HHHHHHCTTTTTTCCEEECCSSCCC--------BCCCHHHHTTCTTCCEEECTTSCC
T ss_pred CCCCEEECcCCCCcccccchHH-HHhhhhcccccCCccEEEeeCCcCC--------ccCChhhhhcCCCCCEEECCCCCc
Confidence 7777777777543443 5554 45444 7777777776543 2233 566777777777777766
Q ss_pred CCCCccccccccceeEEEecCcCCCCCCcCCcceEEEecccccchhhhHHHHhhcccccccccccChhhhhhcccchhhc
Q 002313 394 QVMPQDLVFVELERFRICIGDVWSWSDGYETSKTLKLQLNNSTYLGYGMKMLLKRTEDLHLDELAGFKNVVHELDDEEGF 473 (937)
Q Consensus 394 ~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~ 473 (937)
..+|.-..++ +|+.|+++++... .++..+.. +
T Consensus 586 ~~lp~~~~L~--------------------------------------------~L~~L~Ls~N~l~-~lp~~l~~---l 617 (876)
T 4ecn_A 586 RHLEAFGTNV--------------------------------------------KLTDLKLDYNQIE-EIPEDFCA---F 617 (876)
T ss_dssp CBCCCCCTTS--------------------------------------------EESEEECCSSCCS-CCCTTSCE---E
T ss_pred ccchhhcCCC--------------------------------------------cceEEECcCCccc-cchHHHhh---c
Confidence 5444111222 3333333333221 22333433 6
Q ss_pred cc-CcEEEeecCCceEEEEccCCccccccccceecccccccccccccccccCCCCCccCCCccEEEEecCCCcccccchh
Q 002313 474 AR-LRHLHVHNGPEILHILNSDGRVGTFPLLESLFLHNLINLEKVCDGKVRLNEDDKSFSNLRIIKVEGCHRVKHLFPFS 552 (937)
Q Consensus 474 ~~-L~~L~l~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~l~~~~~~~~~~~~~~~~l~~L~~L~l~~C~~L~~l~~~~ 552 (937)
++ |++|+++++.- ..++.. ......++|+.|+++++. +.... ..++.....-..++|+.|++++| +++.+|. .
T Consensus 618 ~~~L~~L~Ls~N~L-~~lp~~-~~~~~~~~L~~L~Ls~N~-l~g~i-p~l~~~l~~~~~~~L~~L~Ls~N-~L~~lp~-~ 691 (876)
T 4ecn_A 618 TDQVEGLGFSHNKL-KYIPNI-FNAKSVYVMGSVDFSYNK-IGSEG-RNISCSMDDYKGINASTVTLSYN-EIQKFPT-E 691 (876)
T ss_dssp CTTCCEEECCSSCC-CSCCSC-CCTTCSSCEEEEECCSSC-TTTTS-SSCSSCTTTCCCCCEEEEECCSS-CCCSCCH-H
T ss_pred cccCCEEECcCCCC-CcCchh-hhccccCCCCEEECcCCc-CCCcc-ccchhhhccccCCCcCEEEccCC-cCCccCH-H
Confidence 77 88888877642 233111 111223458888888763 22110 00110001123458999999985 5777764 4
Q ss_pred HHHhhccccEEEEcccccchhhhccccccccccCCccccccccccceeeccCCCCccccccCCCCCcccCCCCCCccccC
Q 002313 553 LVKNLLQLQKVKVTDCTNLKLIVGKESENSAHKNGSISGVYFRKLHFLKLQHLPQLTSSGFDLETPTNTQGSNPGIIAEG 632 (937)
Q Consensus 553 ~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~i~~~~~~~L~~L~l~~c~~L~~~~~~~~~~~~~~~~~~~~~~~~ 632 (937)
.+..+++|++|+++++ .+..++....... .-....+++|+.|+++++ ++..++..+.
T Consensus 692 ~~~~l~~L~~L~Ls~N-~L~~ip~~~~~~~-----~~~l~nl~~L~~L~Ls~N-~L~~lp~~l~---------------- 748 (876)
T 4ecn_A 692 LFATGSPISTIILSNN-LMTSIPENSLKPK-----DGNYKNTYLLTTIDLRFN-KLTSLSDDFR---------------- 748 (876)
T ss_dssp HHHTTCCCSEEECCSC-CCSCCCTTSSSCT-----TSCCTTGGGCCEEECCSS-CCCCCCGGGS----------------
T ss_pred HHccCCCCCEEECCCC-cCCccChHHhccc-----cccccccCCccEEECCCC-CCccchHHhh----------------
Confidence 5567899999999986 4444443211100 000013458999999887 4555443310
Q ss_pred CCCCccccccccccCCCcceeeccCcccceeccCCcccccccCCCccEEEEeccC------CccccchHHHHhhccccce
Q 002313 633 DPKDFTSLFNERVVFPSLKKLKLSSINVEKIWLNSFSAIESWGKNLTKLTVEKCG------RLKFLFSSSMVNGLEQLQQ 706 (937)
Q Consensus 633 ~~~~~~~~~~~~~~~~~L~~L~l~~c~l~~~~~~~~~~~~~~l~~L~~L~i~~c~------~l~~l~~~~~~~~l~~L~~ 706 (937)
...+++|+.|+|++|.++.+|.. ...+++|+.|++++|+ ....++ ..+..+++|+.
T Consensus 749 -----------~~~l~~L~~L~Ls~N~L~~lp~~-----l~~L~~L~~L~Ls~N~~ls~N~l~~~ip--~~l~~L~~L~~ 810 (876)
T 4ecn_A 749 -----------ATTLPYLSNMDVSYNCFSSFPTQ-----PLNSSQLKAFGIRHQRDAEGNRILRQWP--TGITTCPSLIQ 810 (876)
T ss_dssp -----------TTTCTTCCEEECCSSCCSSCCCG-----GGGCTTCCEEECCCCBCTTCCBCCCCCC--TTGGGCSSCCE
T ss_pred -----------hccCCCcCEEEeCCCCCCccchh-----hhcCCCCCEEECCCCCCcccccccccCh--HHHhcCCCCCE
Confidence 01578999999999988877532 2377899999998743 223332 35678999999
Q ss_pred eeeccccchHHHhccCCCCCCCcccccccccceeeeccCcc
Q 002313 707 LDISHCKSMNEVINTRVGRDDNMIEMVFPKLVSLQLSHLPK 747 (937)
Q Consensus 707 L~i~~c~~l~~~~~~~~~~~~~~~~~~~~~L~~L~i~~c~~ 747 (937)
|++++|.- ..++.. .+++|+.|++++++-
T Consensus 811 L~Ls~N~L-~~Ip~~-----------l~~~L~~LdLs~N~l 839 (876)
T 4ecn_A 811 LQIGSNDI-RKVDEK-----------LTPQLYILDIADNPN 839 (876)
T ss_dssp EECCSSCC-CBCCSC-----------CCSSSCEEECCSCTT
T ss_pred EECCCCCC-CccCHh-----------hcCCCCEEECCCCCC
Confidence 99988864 555543 457899999988863
No 20
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.95 E-value=1.1e-26 Score=273.44 Aligned_cols=391 Identities=15% Similarity=0.150 Sum_probs=227.3
Q ss_pred CcCcccCccccCCCCCCEEEccCCcccC------------------c-cccc--CCCCCcEEecccCcCc-ccCcccccC
Q 002313 267 FRFHSLPSSLGCLINLRTLSLENCLVVD------------------V-AIIG--DLKKLEILSLKHSSIE-QLPREIGQL 324 (937)
Q Consensus 267 ~~~~~lp~~i~~l~~Lr~L~L~~~~~~~------------------l-~~i~--~L~~L~~L~L~~~~l~-~lp~~i~~L 324 (937)
|.++.+|..|+++++|++|++++|.++. + ..++ ++++|++|++++|.+. .+|..++++
T Consensus 193 n~l~~ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l 272 (636)
T 4eco_A 193 NNITFVSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKAL 272 (636)
T ss_dssp CEEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTC
T ss_pred CCCccCCHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcC
Confidence 3444566666677777777777766655 4 5556 6777777777766543 566666777
Q ss_pred ccCCEEEecCCCCCc--ccChhhhcCC------CCCcEEEcCCCcccceecCCCCCChh--hhcCCCCCCeEEeecCCCC
Q 002313 325 TCLKLLDLSNCSKLK--EIRPNVISNL------TRLEELYMGNSFTQWKVEGQSNASLG--ELKQLSRLTTLEVHIPDAQ 394 (937)
Q Consensus 325 ~~L~~L~l~~~~~l~--~lp~~~l~~L------~~L~~L~l~~~~~~~~~~~~~~~~~~--~l~~l~~L~~L~l~~~~~~ 394 (937)
++|++|++++|..+. .+|.. ++++ ++|++|++++|.+. ..+. .+..+++|+.|+++.+.+.
T Consensus 273 ~~L~~L~Ls~n~~l~~~~lp~~-~~~L~~~~~l~~L~~L~L~~n~l~--------~ip~~~~l~~l~~L~~L~L~~N~l~ 343 (636)
T 4eco_A 273 PEMQLINVACNRGISGEQLKDD-WQALADAPVGEKIQIIYIGYNNLK--------TFPVETSLQKMKKLGMLECLYNQLE 343 (636)
T ss_dssp SSCCEEECTTCTTSCHHHHHHH-HHHHHHSGGGGTCCEEECCSSCCS--------SCCCHHHHTTCTTCCEEECCSCCCE
T ss_pred CCCCEEECcCCCCCccccchHH-HHhhhccccCCCCCEEECCCCcCC--------ccCchhhhccCCCCCEEeCcCCcCc
Confidence 777777776654344 35554 5554 66777776666442 2233 5666666677777666554
Q ss_pred -CCCccc-cccccceeEEEecCcCCCCCCcCCcceEEEecccccchhhhHHHHhhcccccccccccChhhhhhcccchhh
Q 002313 395 -VMPQDL-VFVELERFRICIGDVWSWSDGYETSKTLKLQLNNSTYLGYGMKMLLKRTEDLHLDELAGFKNVVHELDDEEG 472 (937)
Q Consensus 395 -~~~~~~-~~~~L~~l~l~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~ 472 (937)
.+| .+ ... +|+.|+++++... .++..+..
T Consensus 344 g~ip-~~~~l~--------------------------------------------~L~~L~L~~N~l~-~lp~~l~~--- 374 (636)
T 4eco_A 344 GKLP-AFGSEI--------------------------------------------KLASLNLAYNQIT-EIPANFCG--- 374 (636)
T ss_dssp EECC-CCEEEE--------------------------------------------EESEEECCSSEEE-ECCTTSEE---
T ss_pred cchh-hhCCCC--------------------------------------------CCCEEECCCCccc-cccHhhhh---
Confidence 444 11 222 3333444332221 22333443
Q ss_pred ccc-CcEEEeecCCceEEEEccCCccccccccceeccccccccccccccccc-CCCCCccCCCccEEEEecCCCcccccc
Q 002313 473 FAR-LRHLHVHNGPEILHILNSDGRVGTFPLLESLFLHNLINLEKVCDGKVR-LNEDDKSFSNLRIIKVEGCHRVKHLFP 550 (937)
Q Consensus 473 ~~~-L~~L~l~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~l~~~~~~~~~-~~~~~~~l~~L~~L~l~~C~~L~~l~~ 550 (937)
+++ |++|+++++.-. .++.. .....+++|++|+++++. +.......++ .....-.+++|++|++++| +++.+|+
T Consensus 375 l~~~L~~L~Ls~N~l~-~lp~~-~~~~~l~~L~~L~Ls~N~-l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N-~l~~lp~ 450 (636)
T 4eco_A 375 FTEQVENLSFAHNKLK-YIPNI-FDAKSVSVMSAIDFSYNE-IGSVDGKNFDPLDPTPFKGINVSSINLSNN-QISKFPK 450 (636)
T ss_dssp ECTTCCEEECCSSCCS-SCCSC-CCTTCSSCEEEEECCSSC-TTTTTTCSSCTTCSSCCCCCCEEEEECCSS-CCCSCCT
T ss_pred hcccCcEEEccCCcCc-ccchh-hhhcccCccCEEECcCCc-CCCcchhhhcccccccccCCCCCEEECcCC-ccCcCCH
Confidence 777 888888876432 33211 111234578888888863 3221100000 0001115569999999984 5777765
Q ss_pred hhHHHhhccccEEEEcccccchhhhccccccccccCCccccccccccceeeccCCCCccccccCCCCCcccCCCCCCccc
Q 002313 551 FSLVKNLLQLQKVKVTDCTNLKLIVGKESENSAHKNGSISGVYFRKLHFLKLQHLPQLTSSGFDLETPTNTQGSNPGIIA 630 (937)
Q Consensus 551 ~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~i~~~~~~~L~~L~l~~c~~L~~~~~~~~~~~~~~~~~~~~~~ 630 (937)
..+..+++|++|+++++. +..++....... .-....+++|++|+++++. ++.++...
T Consensus 451 -~~~~~l~~L~~L~Ls~N~-l~~i~~~~~~~~-----~~~~~~l~~L~~L~Ls~N~-l~~lp~~~--------------- 507 (636)
T 4eco_A 451 -ELFSTGSPLSSINLMGNM-LTEIPKNSLKDE-----NENFKNTYLLTSIDLRFNK-LTKLSDDF--------------- 507 (636)
T ss_dssp -HHHHTTCCCSEEECCSSC-CSBCCSSSSEET-----TEECTTGGGCCEEECCSSC-CCBCCGGG---------------
T ss_pred -HHHccCCCCCEEECCCCC-CCCcCHHHhccc-----cccccccCCccEEECcCCc-CCccChhh---------------
Confidence 556678999999999865 444442211100 0000123489999998864 44544321
Q ss_pred cCCCCCccccccccccCCCcceeeccCcccceeccCCcccccccCCCccEEEEeccC------CccccchHHHHhhcccc
Q 002313 631 EGDPKDFTSLFNERVVFPSLKKLKLSSINVEKIWLNSFSAIESWGKNLTKLTVEKCG------RLKFLFSSSMVNGLEQL 704 (937)
Q Consensus 631 ~~~~~~~~~~~~~~~~~~~L~~L~l~~c~l~~~~~~~~~~~~~~l~~L~~L~i~~c~------~l~~l~~~~~~~~l~~L 704 (937)
. ...+++|+.|++++|.++.+|.. ...+++|+.|++++|. ....++ ..+..+++|
T Consensus 508 -----------~-~~~l~~L~~L~Ls~N~l~~ip~~-----~~~l~~L~~L~Ls~N~~ls~N~l~~~~p--~~l~~l~~L 568 (636)
T 4eco_A 508 -----------R-ATTLPYLVGIDLSYNSFSKFPTQ-----PLNSSTLKGFGIRNQRDAQGNRTLREWP--EGITLCPSL 568 (636)
T ss_dssp -----------S-TTTCTTCCEEECCSSCCSSCCCG-----GGGCSSCCEEECCSCBCTTCCBCCCCCC--TTGGGCSSC
T ss_pred -----------h-hccCCCcCEEECCCCCCCCcChh-----hhcCCCCCEEECCCCcccccCcccccCh--HHHhcCCCC
Confidence 0 01578999999999988876533 2368899999996543 233332 356789999
Q ss_pred ceeeeccccchHHHhccCCCCCCCcccccccccceeeeccCccccccccc--------CCCCcccccceeeccCCCce
Q 002313 705 QQLDISHCKSMNEVINTRVGRDDNMIEMVFPKLVSLQLSHLPKLTRFGIG--------DSVEFPSLCQLQIACCPNLK 774 (937)
Q Consensus 705 ~~L~i~~c~~l~~~~~~~~~~~~~~~~~~~~~L~~L~i~~c~~l~~~~~~--------~~~~l~~L~~L~i~~C~~l~ 774 (937)
+.|++++|.- ..++.. .+++|++|++++++-.. +... ....+...+..+|.+|+.|+
T Consensus 569 ~~L~Ls~N~l-~~ip~~-----------~~~~L~~L~Ls~N~l~~-~~~~~~~~~~~~~~~~l~~~~~~~i~~C~~L~ 633 (636)
T 4eco_A 569 TQLQIGSNDI-RKVNEK-----------ITPNISVLDIKDNPNIS-IDLSYVCPYIEAGMYMLFYDKTQDIRGCDALD 633 (636)
T ss_dssp CEEECCSSCC-CBCCSC-----------CCTTCCEEECCSCTTCE-EECTTTHHHHHTTCCEEECCTTSEEESCGGGC
T ss_pred CEEECCCCcC-CccCHh-----------HhCcCCEEECcCCCCcc-ccHHhcchhhhcccceeecCCccccCCCcccc
Confidence 9999988864 555543 44889999998886332 2211 11123344666778887774
No 21
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.94 E-value=3.5e-26 Score=269.14 Aligned_cols=355 Identities=14% Similarity=0.139 Sum_probs=233.0
Q ss_pred CChhhhcCCCCccEEEecCCcCcc------------------cCcccc--CCCCCCEEEccCCcccC-c-ccccCCCCCc
Q 002313 248 IPDPFFEGMTELRVLDLTGFRFHS------------------LPSSLG--CLINLRTLSLENCLVVD-V-AIIGDLKKLE 305 (937)
Q Consensus 248 ~~~~~~~~l~~Lr~L~L~~~~~~~------------------lp~~i~--~l~~Lr~L~L~~~~~~~-l-~~i~~L~~L~ 305 (937)
+|.. |+++++|++|+|++|.+.. +|+.++ ++++|++|++++|.+.. + ..++++++|+
T Consensus 198 ip~~-l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~ 276 (636)
T 4eco_A 198 VSKA-VMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQ 276 (636)
T ss_dssp ECGG-GGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCC
T ss_pred CCHH-HhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCC
Confidence 6765 6899999999999999987 999999 99999999999998764 3 7899999999
Q ss_pred EEecccCc-Cc--ccCcccccC------ccCCEEEecCCCCCcccCh-hhhcCCCCCcEEEcCCCcccceecCCCCCChh
Q 002313 306 ILSLKHSS-IE--QLPREIGQL------TCLKLLDLSNCSKLKEIRP-NVISNLTRLEELYMGNSFTQWKVEGQSNASLG 375 (937)
Q Consensus 306 ~L~L~~~~-l~--~lp~~i~~L------~~L~~L~l~~~~~l~~lp~-~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~ 375 (937)
+|++++|. ++ .+|..++++ ++|++|++++|. +..+|. +.++++++|++|++++|.+. |. .+
T Consensus 277 ~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~-l~~ip~~~~l~~l~~L~~L~L~~N~l~----g~---ip- 347 (636)
T 4eco_A 277 LINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNN-LKTFPVETSLQKMKKLGMLECLYNQLE----GK---LP- 347 (636)
T ss_dssp EEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSC-CSSCCCHHHHTTCTTCCEEECCSCCCE----EE---CC-
T ss_pred EEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCc-CCccCchhhhccCCCCCEEeCcCCcCc----cc---hh-
Confidence 99999998 87 489989887 999999999965 678887 23899999999999998764 21 22
Q ss_pred hhcCCCCCCeEEeecCCCCCCCccc-cccc-cceeEEEecCcCCCCCCcCCcceEEEecccccchhhhHHHHhhcccccc
Q 002313 376 ELKQLSRLTTLEVHIPDAQVMPQDL-VFVE-LERFRICIGDVWSWSDGYETSKTLKLQLNNSTYLGYGMKMLLKRTEDLH 453 (937)
Q Consensus 376 ~l~~l~~L~~L~l~~~~~~~~~~~~-~~~~-L~~l~l~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~L~~L~ 453 (937)
.+..+++|+.|+++++.+..+|..+ ...+ |+.|.+..+..-........ ..+++|+.|+
T Consensus 348 ~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~~L~~L~Ls~N~l~~lp~~~~~-------------------~~l~~L~~L~ 408 (636)
T 4eco_A 348 AFGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLKYIPNIFDA-------------------KSVSVMSAID 408 (636)
T ss_dssp CCEEEEEESEEECCSSEEEECCTTSEEECTTCCEEECCSSCCSSCCSCCCT-------------------TCSSCEEEEE
T ss_pred hhCCCCCCCEEECCCCccccccHhhhhhcccCcEEEccCCcCcccchhhhh-------------------cccCccCEEE
Confidence 6777889999999999887777665 5566 77777654432110000000 0123566677
Q ss_pred cccccChhhhhhcccch----hhcccCcEEEeecCCceEEEEccCCccccccccceecccccccccccccccccCC-CCC
Q 002313 454 LDELAGFKNVVHELDDE----EGFARLRHLHVHNGPEILHILNSDGRVGTFPLLESLFLHNLINLEKVCDGKVRLN-EDD 528 (937)
Q Consensus 454 l~~~~~~~~~~~~l~~~----~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~l~~~~~~~~~~~-~~~ 528 (937)
++++......+..+... -.+++|++|+++++.-. .++ ......+++|++|+++++ .++.+....+... ...
T Consensus 409 Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~-~lp--~~~~~~l~~L~~L~Ls~N-~l~~i~~~~~~~~~~~~ 484 (636)
T 4eco_A 409 FSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQIS-KFP--KELFSTGSPLSSINLMGN-MLTEIPKNSLKDENENF 484 (636)
T ss_dssp CCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCC-SCC--THHHHTTCCCSEEECCSS-CCSBCCSSSSEETTEEC
T ss_pred CcCCcCCCcchhhhcccccccccCCCCCEEECcCCccC-cCC--HHHHccCCCCCEEECCCC-CCCCcCHHHhccccccc
Confidence 76655443333333300 02567888888776332 221 111134677888888775 3443322111100 000
Q ss_pred ccCCCccEEEEecCCCcccccchhHH--HhhccccEEEEcccccchhhhccccccccccCCccccccccccceeeccCCC
Q 002313 529 KSFSNLRIIKVEGCHRVKHLFPFSLV--KNLLQLQKVKVTDCTNLKLIVGKESENSAHKNGSISGVYFRKLHFLKLQHLP 606 (937)
Q Consensus 529 ~~l~~L~~L~l~~C~~L~~l~~~~~~--~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~i~~~~~~~L~~L~l~~c~ 606 (937)
..+++|+.|+++++ +++.+|. .+ ..+++|++|+++++. ++.++. ....+++|+.|+++++.
T Consensus 485 ~~l~~L~~L~Ls~N-~l~~lp~--~~~~~~l~~L~~L~Ls~N~-l~~ip~-------------~~~~l~~L~~L~Ls~N~ 547 (636)
T 4eco_A 485 KNTYLLTSIDLRFN-KLTKLSD--DFRATTLPYLVGIDLSYNS-FSKFPT-------------QPLNSSTLKGFGIRNQR 547 (636)
T ss_dssp TTGGGCCEEECCSS-CCCBCCG--GGSTTTCTTCCEEECCSSC-CSSCCC-------------GGGGCSSCCEEECCSCB
T ss_pred cccCCccEEECcCC-cCCccCh--hhhhccCCCcCEEECCCCC-CCCcCh-------------hhhcCCCCCEEECCCCc
Confidence 11237888888874 4666663 23 367888888888754 333321 11267788888886544
Q ss_pred Cc------cccccCCCCCcccCCCCCCccccCCCCCccccccccccCCCcceeeccCcccceeccCCcccccccCCCccE
Q 002313 607 QL------TSSGFDLETPTNTQGSNPGIIAEGDPKDFTSLFNERVVFPSLKKLKLSSINVEKIWLNSFSAIESWGKNLTK 680 (937)
Q Consensus 607 ~L------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~l~~~~~~~~~~~~~~l~~L~~ 680 (937)
.+ ..++.. ...+++|+.|++++|.++.+|.. ..++|+.
T Consensus 548 ~ls~N~l~~~~p~~-----------------------------l~~l~~L~~L~Ls~N~l~~ip~~-------~~~~L~~ 591 (636)
T 4eco_A 548 DAQGNRTLREWPEG-----------------------------ITLCPSLTQLQIGSNDIRKVNEK-------ITPNISV 591 (636)
T ss_dssp CTTCCBCCCCCCTT-----------------------------GGGCSSCCEEECCSSCCCBCCSC-------CCTTCCE
T ss_pred ccccCcccccChHH-----------------------------HhcCCCCCEEECCCCcCCccCHh-------HhCcCCE
Confidence 22 111111 23577888888888877777632 3368888
Q ss_pred EEEeccCC
Q 002313 681 LTVEKCGR 688 (937)
Q Consensus 681 L~i~~c~~ 688 (937)
|++++|+.
T Consensus 592 L~Ls~N~l 599 (636)
T 4eco_A 592 LDIKDNPN 599 (636)
T ss_dssp EECCSCTT
T ss_pred EECcCCCC
Confidence 88888754
No 22
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.94 E-value=9.5e-26 Score=269.05 Aligned_cols=161 Identities=19% Similarity=0.232 Sum_probs=117.4
Q ss_pred CccceeeecCCcccccCChhhhcCCCCccEEEe-cCCcCccc-Ccc----------------------------------
Q 002313 232 LKLKLFLFFTENLSLQIPDPFFEGMTELRVLDL-TGFRFHSL-PSS---------------------------------- 275 (937)
Q Consensus 232 ~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~L-~~~~~~~l-p~~---------------------------------- 275 (937)
.++..|++.++...+.+|++ ++++++|++|+| ++|.+... |-.
T Consensus 323 ~~V~~L~Ls~~~L~G~ip~~-l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s 401 (876)
T 4ecn_A 323 GRVTGLSLAGFGAKGRVPDA-IGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLS 401 (876)
T ss_dssp SCEEEEECTTTCCEEEECGG-GGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSC
T ss_pred CCEEEEECccCCCCCcCchH-HhccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcchhhh
Confidence 57888999988888888876 488999999999 66654211 100
Q ss_pred ---------------c--cCCCCCCEEEccC--CcccCc-ccccCCCCCcEEecccCcCcc------------------c
Q 002313 276 ---------------L--GCLINLRTLSLEN--CLVVDV-AIIGDLKKLEILSLKHSSIEQ------------------L 317 (937)
Q Consensus 276 ---------------i--~~l~~Lr~L~L~~--~~~~~l-~~i~~L~~L~~L~L~~~~l~~------------------l 317 (937)
+ .....++.+.+.. |.++.+ ..++++++|++|++++|.++. +
T Consensus 402 ~l~~~~l~~~~~~~~i~~~~~l~l~~l~l~~~~N~L~~IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~i 481 (876)
T 4ecn_A 402 DLLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYE 481 (876)
T ss_dssp HHHHHHHHTCTTSCCCCCCCCCCCCTTTTTCCSCEEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHT
T ss_pred HHHHHHhhhCccccccccccccchhhceeccccCcccchhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccC
Confidence 0 1112233333322 455545 679999999999999999998 9
Q ss_pred Ccccc--cCccCCEEEecCCCCCcccChhhhcCCCCCcEEEcCCCc-ccceecC-CCCCChh----hhcCCCCCCeEEee
Q 002313 318 PREIG--QLTCLKLLDLSNCSKLKEIRPNVISNLTRLEELYMGNSF-TQWKVEG-QSNASLG----ELKQLSRLTTLEVH 389 (937)
Q Consensus 318 p~~i~--~L~~L~~L~l~~~~~l~~lp~~~l~~L~~L~~L~l~~~~-~~~~~~~-~~~~~~~----~l~~l~~L~~L~l~ 389 (937)
|..++ ++++|++|++++|.....+|.. ++++++|++|++++|. +. + ..+..+. .+..+++|+.|+++
T Consensus 482 P~~l~f~~L~~L~~L~Ls~N~l~~~iP~~-l~~L~~L~~L~Ls~N~~ls----g~~iP~~i~~L~~~~~~l~~L~~L~Ls 556 (876)
T 4ecn_A 482 NEELSWSNLKDLTDVELYNCPNMTQLPDF-LYDLPELQSLNIACNRGIS----AAQLKADWTRLADDEDTGPKIQIFYMG 556 (876)
T ss_dssp TSCCCGGGCTTCCEEEEESCTTCCSCCGG-GGGCSSCCEEECTTCTTSC----HHHHHHHHHHHHHCTTTTTTCCEEECC
T ss_pred ChhhhhccCCCCCEEECcCCCCCccChHH-HhCCCCCCEEECcCCCCcc----cccchHHHHhhhhcccccCCccEEEee
Confidence 99988 9999999999998878888866 9999999999999996 43 1 1122222 33456699999999
Q ss_pred cCCCCCCCc
Q 002313 390 IPDAQVMPQ 398 (937)
Q Consensus 390 ~~~~~~~~~ 398 (937)
++.+..+|.
T Consensus 557 ~N~L~~ip~ 565 (876)
T 4ecn_A 557 YNNLEEFPA 565 (876)
T ss_dssp SSCCCBCCC
T ss_pred CCcCCccCC
Confidence 987765543
No 23
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.94 E-value=6.7e-25 Score=255.70 Aligned_cols=145 Identities=21% Similarity=0.311 Sum_probs=110.4
Q ss_pred CCcEEEccCCCCccCCcccCCCccceeeecCCcccccCChhhhcCCCCccEEEecCCcCccc-CccccCCCCCCEEEccC
Q 002313 211 APTAISIPFRGIYELPERLGFLKLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHSL-PSSLGCLINLRTLSLEN 289 (937)
Q Consensus 211 ~l~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~l-p~~i~~l~~Lr~L~L~~ 289 (937)
..++++++++.+..+|..+. +++++|++++|.+. .++...|.++++|++|++++|.++.+ |..|+++++|++|++++
T Consensus 32 ~~~~l~ls~~~L~~ip~~~~-~~L~~L~Ls~N~i~-~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~ 109 (562)
T 3a79_B 32 LESMVDYSNRNLTHVPKDLP-PRTKALSLSQNSIS-ELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSH 109 (562)
T ss_dssp -CCEEECTTSCCCSCCTTSC-TTCCEEECCSSCCC-CCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTT
T ss_pred CCcEEEcCCCCCccCCCCCC-CCcCEEECCCCCcc-ccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCC
Confidence 34788888888888887664 78888888888754 45555578888888888888888877 67788888888888888
Q ss_pred CcccCcccccCCCCCcEEecccCcCcccC--cccccCccCCEEEecCCCCCcccChhhhcCCCCC--cEEEcCCCcc
Q 002313 290 CLVVDVAIIGDLKKLEILSLKHSSIEQLP--REIGQLTCLKLLDLSNCSKLKEIRPNVISNLTRL--EELYMGNSFT 362 (937)
Q Consensus 290 ~~~~~l~~i~~L~~L~~L~L~~~~l~~lp--~~i~~L~~L~~L~l~~~~~l~~lp~~~l~~L~~L--~~L~l~~~~~ 362 (937)
|.++.++.. .+++|++|++++|.++.+| ..++++++|++|+++++. +.... ++.+++| ++|++++|.+
T Consensus 110 N~l~~lp~~-~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~-l~~~~---~~~l~~L~L~~L~L~~n~l 181 (562)
T 3a79_B 110 NRLQNISCC-PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAK-FRQLD---LLPVAHLHLSCILLDLVSY 181 (562)
T ss_dssp SCCCEECSC-CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSB-CCTTT---TGGGTTSCEEEEEEEESSC
T ss_pred CcCCccCcc-ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCc-cccCc---hhhhhhceeeEEEeecccc
Confidence 888877444 7888888888888887664 678888888888888843 44422 4555555 8888877755
No 24
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.92 E-value=2.3e-24 Score=251.17 Aligned_cols=467 Identities=16% Similarity=0.144 Sum_probs=266.3
Q ss_pred CCCccceeeecCCcccccCChhhhcCCCCccEEEecCCcCcccC-ccccCCCCCCEEEccCCcccCc--ccccCCCCCcE
Q 002313 230 GFLKLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHSLP-SSLGCLINLRTLSLENCLVVDV--AIIGDLKKLEI 306 (937)
Q Consensus 230 ~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~lp-~~i~~l~~Lr~L~L~~~~~~~l--~~i~~L~~L~~ 306 (937)
.+...+++++.++... .+|..+ .++|++|++++|.+..+| ..|+++++|++|++++|.++.+ ..|+++++|++
T Consensus 29 ~~~~~~~l~ls~~~L~-~ip~~~---~~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~ 104 (562)
T 3a79_B 29 SNELESMVDYSNRNLT-HVPKDL---PPRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEY 104 (562)
T ss_dssp ----CCEEECTTSCCC-SCCTTS---CTTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCE
T ss_pred ccCCCcEEEcCCCCCc-cCCCCC---CCCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCE
Confidence 3455689999988755 588765 379999999999999886 6899999999999999999876 67999999999
Q ss_pred EecccCcCcccCcccccCccCCEEEecCCCCCcccCh-hhhcCCCCCcEEEcCCCcccceecCCCCCChhhhcCCCCCCe
Q 002313 307 LSLKHSSIEQLPREIGQLTCLKLLDLSNCSKLKEIRP-NVISNLTRLEELYMGNSFTQWKVEGQSNASLGELKQLSRLTT 385 (937)
Q Consensus 307 L~L~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~lp~-~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~ 385 (937)
|++++|.++.+|.. .+++|++|++++|. +..++. ..++++++|++|++++|.+. ...+..+..+ +|+.
T Consensus 105 L~Ls~N~l~~lp~~--~l~~L~~L~Ls~N~-l~~l~~p~~~~~l~~L~~L~L~~n~l~-------~~~~~~l~~L-~L~~ 173 (562)
T 3a79_B 105 LDVSHNRLQNISCC--PMASLRHLDLSFND-FDVLPVCKEFGNLTKLTFLGLSAAKFR-------QLDLLPVAHL-HLSC 173 (562)
T ss_dssp EECTTSCCCEECSC--CCTTCSEEECCSSC-CSBCCCCGGGGGCTTCCEEEEECSBCC-------TTTTGGGTTS-CEEE
T ss_pred EECCCCcCCccCcc--ccccCCEEECCCCC-ccccCchHhhcccCcccEEecCCCccc-------cCchhhhhhc-eeeE
Confidence 99999999999987 89999999999955 777652 44899999999999998764 2344555555 5699
Q ss_pred EEeecCCC--CCC-CccccccccceeEEEecCcCCCCCCcCCcceEEEecccccchhhhHHHHhhcccccccccccChhh
Q 002313 386 LEVHIPDA--QVM-PQDLVFVELERFRICIGDVWSWSDGYETSKTLKLQLNNSTYLGYGMKMLLKRTEDLHLDELAGFKN 462 (937)
Q Consensus 386 L~l~~~~~--~~~-~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~ 462 (937)
|+++++.. ... +..+..-..+.+.+ ++.+......
T Consensus 174 L~L~~n~l~~~~~~~~~l~~l~~~~l~l------------------------------------------~l~~n~~~~~ 211 (562)
T 3a79_B 174 ILLDLVSYHIKGGETESLQIPNTTVLHL------------------------------------------VFHPNSLFSV 211 (562)
T ss_dssp EEEEESSCCCCSSSCCEEEECCEEEEEE------------------------------------------EECSSSCCCC
T ss_pred EEeecccccccccCcccccccCcceEEE------------------------------------------EecCccchhh
Confidence 99998876 322 21111101111111 1111000000
Q ss_pred hhhcccchhhcccCcEEEeecCCceEEEEccCCccccccccceecccccccccccccccccCCCCCccCCCccEEEEecC
Q 002313 463 VVHELDDEEGFARLRHLHVHNGPEILHILNSDGRVGTFPLLESLFLHNLINLEKVCDGKVRLNEDDKSFSNLRIIKVEGC 542 (937)
Q Consensus 463 ~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~l~~~~~~~~~~~~~~~~l~~L~~L~l~~C 542 (937)
. ..... ..+++|+.|+++++... |..+.... .. ...+++|+.+.+.++
T Consensus 212 ~-~~~~~-~~l~~L~~L~l~~n~~~-----------------------~~~l~~~~-~~------l~~l~~L~~L~L~~~ 259 (562)
T 3a79_B 212 Q-VNMSV-NALGHLQLSNIKLNDEN-----------------------CQRLMTFL-SE------LTRGPTLLNVTLQHI 259 (562)
T ss_dssp C-CEEEE-SSEEEEEEEEEECCSTT-----------------------HHHHHHHH-HH------HHSCSSCEEEEEEEE
T ss_pred h-hhhcc-cccceEEEecccccccc-----------------------cchHHHHH-HH------HhccCcceEEEecCC
Confidence 0 00110 23566777766654200 00000000 00 112344444544443
Q ss_pred C----CcccccchhHHHhhccccEEEEcccccchhhhccccccccccCCccccccccccceeeccCCCCcc-ccccCCCC
Q 002313 543 H----RVKHLFPFSLVKNLLQLQKVKVTDCTNLKLIVGKESENSAHKNGSISGVYFRKLHFLKLQHLPQLT-SSGFDLET 617 (937)
Q Consensus 543 ~----~L~~l~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~i~~~~~~~L~~L~l~~c~~L~-~~~~~~~~ 617 (937)
. .+..+++ ....++|++|++++|.--..++..... ...++|+.|.+.++..-. .++..
T Consensus 260 ~l~~~~~~~~~~---~~~~~~L~~L~l~~n~l~~~ip~~~~~-----------~~~~~L~~L~~~~~~~~~~~~p~~--- 322 (562)
T 3a79_B 260 ETTWKCSVKLFQ---FFWPRPVEYLNIYNLTITERIDREEFT-----------YSETALKSLMIEHVKNQVFLFSKE--- 322 (562)
T ss_dssp EECHHHHHHHHH---HHTTSSEEEEEEEEEEECSCCCCCCCC-----------CCSCSCCEEEEEEEEECCCSSCHH---
T ss_pred cCcHHHHHHHHH---hhhcccccEEEEeccEeeccccchhhh-----------cccccchheehhhcccceeecChh---
Confidence 2 1111111 111235666666655422222210000 001333333332211000 11100
Q ss_pred CcccCCCCCCccccCCCCCccccccccccCCCcceeeccCcccceeccCCcccccccCCCccEEEEeccCCccccchHHH
Q 002313 618 PTNTQGSNPGIIAEGDPKDFTSLFNERVVFPSLKKLKLSSINVEKIWLNSFSAIESWGKNLTKLTVEKCGRLKFLFSSSM 697 (937)
Q Consensus 618 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~l~~~~~~~~~~~~~~l~~L~~L~i~~c~~l~~l~~~~~ 697 (937)
.+......++|+.|++++|.+...+. ...+++|++|++++|.--...+ ..
T Consensus 323 ----------------------~~~~~~~~~~L~~L~l~~n~~~~~~~------~~~l~~L~~L~l~~n~l~~~~~--~~ 372 (562)
T 3a79_B 323 ----------------------ALYSVFAEMNIKMLSISDTPFIHMVC------PPSPSSFTFLNFTQNVFTDSVF--QG 372 (562)
T ss_dssp ----------------------HHHHHHHTCCCSEEEEESSCCCCCCC------CSSCCCCCEEECCSSCCCTTTT--TT
T ss_pred ----------------------hhhhhhccCcceEEEccCCCcccccC------ccCCCCceEEECCCCccccchh--hh
Confidence 00000012456777777775544431 1355677777777764322121 24
Q ss_pred HhhccccceeeeccccchHHHhccCCCCCCCcccccccccceeeeccCcccccccccCCCCcccccceeeccCCCceeec
Q 002313 698 VNGLEQLQQLDISHCKSMNEVINTRVGRDDNMIEMVFPKLVSLQLSHLPKLTRFGIGDSVEFPSLCQLQIACCPNLKIFI 777 (937)
Q Consensus 698 ~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~~~~~L~~L~i~~c~~l~~~~~~~~~~l~~L~~L~i~~C~~l~~~~ 777 (937)
+..+++|+.|+++++. ++.++... .....+++|++|+++++.--..++...+..+++|+.|++++|.--..
T Consensus 373 ~~~l~~L~~L~L~~N~-l~~~~~~~------~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~-- 443 (562)
T 3a79_B 373 CSTLKRLQTLILQRNG-LKNFFKVA------LMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGS-- 443 (562)
T ss_dssp CCSCSSCCEEECCSSC-CCBTTHHH------HTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTTCCEEECCSSCCCGG--
T ss_pred hcccCCCCEEECCCCC-cCCcccch------hhhcCCCCCCEEECCCCcCCCccChhhhcCcccCCEEECCCCCCCcc--
Confidence 4567777777776653 32211100 00124577777777766433336666666778888888887642210
Q ss_pred cccccccccccccCccCcCccccccccC-CCccEEEecCCCCcceeccCCCCcccCCCCcEEEEEcCCCcccccchhHHH
Q 002313 778 CSCTEEMSSEKNIHTTQTQPLFDEKVGL-PKLEVLRIDGMDNLRKIWHHQLALDSFTKLKDLDVEYCDQLLSIFPSNMLR 856 (937)
Q Consensus 778 ~~~~~~~~~~~~~~~~~~~~l~~~~~~l-~~L~~L~l~~c~~l~~l~~~~~~~~~l~~L~~L~i~~C~~L~~~~p~~~l~ 856 (937)
.| ..+ ++|++|+++++ .++.++... ..+++|+.|+++++ +++. +|...+.
T Consensus 444 --------------------~~---~~l~~~L~~L~L~~N-~l~~ip~~~---~~l~~L~~L~L~~N-~l~~-l~~~~~~ 494 (562)
T 3a79_B 444 --------------------VF---RCLPPKVKVLDLHNN-RIMSIPKDV---THLQALQELNVASN-QLKS-VPDGVFD 494 (562)
T ss_dssp --------------------GG---SSCCTTCSEEECCSS-CCCCCCTTT---TSSCCCSEEECCSS-CCCC-CCTTSTT
T ss_pred --------------------hh---hhhcCcCCEEECCCC-cCcccChhh---cCCCCCCEEECCCC-CCCC-CCHHHHh
Confidence 01 122 68999999988 788877653 35789999999876 4666 5665567
Q ss_pred hcCCCcEEeecccc
Q 002313 857 RLERLEHLAVSECG 870 (937)
Q Consensus 857 ~l~~L~~L~i~~C~ 870 (937)
.+++|+.|++++++
T Consensus 495 ~l~~L~~L~l~~N~ 508 (562)
T 3a79_B 495 RLTSLQYIWLHDNP 508 (562)
T ss_dssp TCTTCCCEECCSCC
T ss_pred cCCCCCEEEecCCC
Confidence 88999999998865
No 25
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.92 E-value=5.1e-24 Score=241.88 Aligned_cols=343 Identities=19% Similarity=0.261 Sum_probs=228.4
Q ss_pred ccCCCcEEEccCCCCccCCcccCCCccceeeecCCcccccCChhhhcCCCCccEEEecCCcCcccCccccCCCCCCEEEc
Q 002313 208 IDEAPTAISIPFRGIYELPERLGFLKLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHSLPSSLGCLINLRTLSL 287 (937)
Q Consensus 208 ~~~~l~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~lp~~i~~l~~Lr~L~L 287 (937)
...+++.+++.++.+..++....+++|++|++++|.+. .++. |.++++|++|++++|.+..++. ++++++|++|++
T Consensus 44 ~l~~l~~L~l~~~~i~~l~~~~~l~~L~~L~Ls~n~l~-~~~~--~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~L 119 (466)
T 1o6v_A 44 DLDQVTTLQADRLGIKSIDGVEYLNNLTQINFSNNQLT-DITP--LKNLTKLVDILMNNNQIADITP-LANLTNLTGLTL 119 (466)
T ss_dssp HHHTCCEEECCSSCCCCCTTGGGCTTCCEEECCSSCCC-CCGG--GTTCTTCCEEECCSSCCCCCGG-GTTCTTCCEEEC
T ss_pred HhccccEEecCCCCCccCcchhhhcCCCEEECCCCccC-Cchh--hhccccCCEEECCCCccccChh-hcCCCCCCEEEC
Confidence 35679999999999888887557889999999888754 4444 6889999999999999888876 889999999999
Q ss_pred cCCcccCcccccCCCCCcEEecccCcCcccCcccccCccCCEEEecCCCCCcccChhhhcCCCCCcEEEcCCCcccceec
Q 002313 288 ENCLVVDVAIIGDLKKLEILSLKHSSIEQLPREIGQLTCLKLLDLSNCSKLKEIRPNVISNLTRLEELYMGNSFTQWKVE 367 (937)
Q Consensus 288 ~~~~~~~l~~i~~L~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~l~~L~~L~~L~l~~~~~~~~~~ 367 (937)
++|.+..++.++++++|++|++++|.+..+| .++++++|++|++++ .+..++. ++++++|++|++++|.+.
T Consensus 120 ~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~-~~~~l~~L~~L~l~~--~~~~~~~--~~~l~~L~~L~l~~n~l~---- 190 (466)
T 1o6v_A 120 FNNQITDIDPLKNLTNLNRLELSSNTISDIS-ALSGLTSLQQLSFGN--QVTDLKP--LANLTTLERLDISSNKVS---- 190 (466)
T ss_dssp CSSCCCCCGGGTTCTTCSEEEEEEEEECCCG-GGTTCTTCSEEEEEE--SCCCCGG--GTTCTTCCEEECCSSCCC----
T ss_pred CCCCCCCChHHcCCCCCCEEECCCCccCCCh-hhccCCcccEeecCC--cccCchh--hccCCCCCEEECcCCcCC----
Confidence 9998888877899999999999999888876 488999999999864 3555554 788999999999888653
Q ss_pred CCCCCChhhhcCCCCCCeEEeecCCCCCCCccccccccceeEEEecCcCCCCCCcCCcceEEEecccccchhhhHHHHhh
Q 002313 368 GQSNASLGELKQLSRLTTLEVHIPDAQVMPQDLVFVELERFRICIGDVWSWSDGYETSKTLKLQLNNSTYLGYGMKMLLK 447 (937)
Q Consensus 368 ~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~ 447 (937)
.+..+..+++|+.|+++++.+...+.... ++
T Consensus 191 -----~~~~l~~l~~L~~L~l~~n~l~~~~~~~~--------------------------------------------l~ 221 (466)
T 1o6v_A 191 -----DISVLAKLTNLESLIATNNQISDITPLGI--------------------------------------------LT 221 (466)
T ss_dssp -----CCGGGGGCTTCSEEECCSSCCCCCGGGGG--------------------------------------------CT
T ss_pred -----CChhhccCCCCCEEEecCCcccccccccc--------------------------------------------cC
Confidence 12457778888888888776544322111 12
Q ss_pred cccccccccccChhhhhhcccchhhcccCcEEEeecCCceEEEEccCCccccccccceecccccccccccccccccCCCC
Q 002313 448 RTEDLHLDELAGFKNVVHELDDEEGFARLRHLHVHNGPEILHILNSDGRVGTFPLLESLFLHNLINLEKVCDGKVRLNED 527 (937)
Q Consensus 448 ~L~~L~l~~~~~~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~l~~~~~~~~~~~~~ 527 (937)
+|+.|+++++... .. ..+ ..+++|++|+++++. +..+. +
T Consensus 222 ~L~~L~l~~n~l~-~~-~~l---~~l~~L~~L~l~~n~----------------------------l~~~~----~---- 260 (466)
T 1o6v_A 222 NLDELSLNGNQLK-DI-GTL---ASLTNLTDLDLANNQ----------------------------ISNLA----P---- 260 (466)
T ss_dssp TCCEEECCSSCCC-CC-GGG---GGCTTCSEEECCSSC----------------------------CCCCG----G----
T ss_pred CCCEEECCCCCcc-cc-hhh---hcCCCCCEEECCCCc----------------------------cccch----h----
Confidence 2233333222110 00 111 224455555554442 11110 0
Q ss_pred CccCCCccEEEEecCCCcccccchhHHHhhccccEEEEcccccchhhhccccccccccCCccccccccccceeeccCCCC
Q 002313 528 DKSFSNLRIIKVEGCHRVKHLFPFSLVKNLLQLQKVKVTDCTNLKLIVGKESENSAHKNGSISGVYFRKLHFLKLQHLPQ 607 (937)
Q Consensus 528 ~~~l~~L~~L~l~~C~~L~~l~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~i~~~~~~~L~~L~l~~c~~ 607 (937)
...+++|++|++++| +++.+++ +..+++|++|++++|. ++.+.. ...+++|+.|++.++.
T Consensus 261 ~~~l~~L~~L~l~~n-~l~~~~~---~~~l~~L~~L~L~~n~-l~~~~~--------------~~~l~~L~~L~L~~n~- 320 (466)
T 1o6v_A 261 LSGLTKLTELKLGAN-QISNISP---LAGLTALTNLELNENQ-LEDISP--------------ISNLKNLTYLTLYFNN- 320 (466)
T ss_dssp GTTCTTCSEEECCSS-CCCCCGG---GTTCTTCSEEECCSSC-CSCCGG--------------GGGCTTCSEEECCSSC-
T ss_pred hhcCCCCCEEECCCC-ccCcccc---ccCCCccCeEEcCCCc-ccCchh--------------hcCCCCCCEEECcCCc-
Confidence 234566666666663 3445443 3456667777776653 222211 1256677777777663
Q ss_pred ccccccCCCCCcccCCCCCCccccCCCCCccccccccccCCCcceeeccCcccceeccCCcccccccCCCccEEEEeccC
Q 002313 608 LTSSGFDLETPTNTQGSNPGIIAEGDPKDFTSLFNERVVFPSLKKLKLSSINVEKIWLNSFSAIESWGKNLTKLTVEKCG 687 (937)
Q Consensus 608 L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~l~~~~~~~~~~~~~~l~~L~~L~i~~c~ 687 (937)
+..+.. ...+++|+.|++++|.++.++ ....+++|+.|++++|.
T Consensus 321 l~~~~~------------------------------~~~l~~L~~L~l~~n~l~~~~------~l~~l~~L~~L~l~~n~ 364 (466)
T 1o6v_A 321 ISDISP------------------------------VSSLTKLQRLFFYNNKVSDVS------SLANLTNINWLSAGHNQ 364 (466)
T ss_dssp CSCCGG------------------------------GGGCTTCCEEECCSSCCCCCG------GGTTCTTCCEEECCSSC
T ss_pred CCCchh------------------------------hccCccCCEeECCCCccCCch------hhccCCCCCEEeCCCCc
Confidence 222111 135788888888888777664 13467889999998885
Q ss_pred CccccchHHHHhhccccceeeecccc
Q 002313 688 RLKFLFSSSMVNGLEQLQQLDISHCK 713 (937)
Q Consensus 688 ~l~~l~~~~~~~~l~~L~~L~i~~c~ 713 (937)
++...+ +..+++|+.|++++|+
T Consensus 365 -l~~~~~---~~~l~~L~~L~l~~n~ 386 (466)
T 1o6v_A 365 -ISDLTP---LANLTRITQLGLNDQA 386 (466)
T ss_dssp -CCBCGG---GTTCTTCCEEECCCEE
T ss_pred -cCccch---hhcCCCCCEEeccCCc
Confidence 444433 6788999999998875
No 26
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.92 E-value=1.4e-23 Score=238.35 Aligned_cols=348 Identities=20% Similarity=0.246 Sum_probs=251.0
Q ss_pred CCCccceeeecCCcccccCChhhhcCCCCccEEEecCCcCcccCccccCCCCCCEEEccCCcccCcccccCCCCCcEEec
Q 002313 230 GFLKLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHSLPSSLGCLINLRTLSLENCLVVDVAIIGDLKKLEILSL 309 (937)
Q Consensus 230 ~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~lp~~i~~l~~Lr~L~L~~~~~~~l~~i~~L~~L~~L~L 309 (937)
.++++++|.+.++... .+|. +..+++|++|++++|.+..+|. ++++++|++|++++|.+..+..++++++|++|++
T Consensus 44 ~l~~l~~L~l~~~~i~-~l~~--~~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~L 119 (466)
T 1o6v_A 44 DLDQVTTLQADRLGIK-SIDG--VEYLNNLTQINFSNNQLTDITP-LKNLTKLVDILMNNNQIADITPLANLTNLTGLTL 119 (466)
T ss_dssp HHHTCCEEECCSSCCC-CCTT--GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCGGGTTCTTCCEEEC
T ss_pred HhccccEEecCCCCCc-cCcc--hhhhcCCCEEECCCCccCCchh-hhccccCCEEECCCCccccChhhcCCCCCCEEEC
Confidence 3678899999887643 5664 6789999999999999998876 8999999999999999888866999999999999
Q ss_pred ccCcCcccCcccccCccCCEEEecCCCCCcccChhhhcCCCCCcEEEcCCCcccceecCCCCCChhhhcCCCCCCeEEee
Q 002313 310 KHSSIEQLPREIGQLTCLKLLDLSNCSKLKEIRPNVISNLTRLEELYMGNSFTQWKVEGQSNASLGELKQLSRLTTLEVH 389 (937)
Q Consensus 310 ~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~ 389 (937)
++|.++.+|. ++++++|++|++++|. +..++. ++.+++|++|++.++. .....+.++++|+.|+++
T Consensus 120 ~~n~l~~~~~-~~~l~~L~~L~l~~n~-l~~~~~--~~~l~~L~~L~l~~~~----------~~~~~~~~l~~L~~L~l~ 185 (466)
T 1o6v_A 120 FNNQITDIDP-LKNLTNLNRLELSSNT-ISDISA--LSGLTSLQQLSFGNQV----------TDLKPLANLTTLERLDIS 185 (466)
T ss_dssp CSSCCCCCGG-GTTCTTCSEEEEEEEE-ECCCGG--GTTCTTCSEEEEEESC----------CCCGGGTTCTTCCEEECC
T ss_pred CCCCCCCChH-HcCCCCCCEEECCCCc-cCCChh--hccCCcccEeecCCcc----------cCchhhccCCCCCEEECc
Confidence 9999988876 8999999999999854 777764 8899999999986432 122347888889999988
Q ss_pred cCCCCCCCccccccccceeEEEecCcCCCCCCcCCcceEEEecccccchhhhHHHHhhcccccccccccChhhhhhcccc
Q 002313 390 IPDAQVMPQDLVFVELERFRICIGDVWSWSDGYETSKTLKLQLNNSTYLGYGMKMLLKRTEDLHLDELAGFKNVVHELDD 469 (937)
Q Consensus 390 ~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~ 469 (937)
++.+..++. +
T Consensus 186 ~n~l~~~~~--------------------------------------------------------------------l-- 195 (466)
T 1o6v_A 186 SNKVSDISV--------------------------------------------------------------------L-- 195 (466)
T ss_dssp SSCCCCCGG--------------------------------------------------------------------G--
T ss_pred CCcCCCChh--------------------------------------------------------------------h--
Confidence 775433211 1
Q ss_pred hhhcccCcEEEeecCCceEEEEccCCccccccccceecccccccccccccccccCCCCCccCCCccEEEEecCCCccccc
Q 002313 470 EEGFARLRHLHVHNGPEILHILNSDGRVGTFPLLESLFLHNLINLEKVCDGKVRLNEDDKSFSNLRIIKVEGCHRVKHLF 549 (937)
Q Consensus 470 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~l~~~~~~~~~~~~~~~~l~~L~~L~l~~C~~L~~l~ 549 (937)
..+++|++|+++++.-. .+. ....+++|++|+++++ .++.+. ....+++|+.|++++| .++.++
T Consensus 196 -~~l~~L~~L~l~~n~l~-~~~----~~~~l~~L~~L~l~~n-~l~~~~--------~l~~l~~L~~L~l~~n-~l~~~~ 259 (466)
T 1o6v_A 196 -AKLTNLESLIATNNQIS-DIT----PLGILTNLDELSLNGN-QLKDIG--------TLASLTNLTDLDLANN-QISNLA 259 (466)
T ss_dssp -GGCTTCSEEECCSSCCC-CCG----GGGGCTTCCEEECCSS-CCCCCG--------GGGGCTTCSEEECCSS-CCCCCG
T ss_pred -ccCCCCCEEEecCCccc-ccc----cccccCCCCEEECCCC-Ccccch--------hhhcCCCCCEEECCCC-ccccch
Confidence 12455555555554221 110 0234566666666654 233221 1346789999999996 466665
Q ss_pred chhHHHhhccccEEEEcccccchhhhccccccccccCCccccccccccceeeccCCCCccccccCCCCCcccCCCCCCcc
Q 002313 550 PFSLVKNLLQLQKVKVTDCTNLKLIVGKESENSAHKNGSISGVYFRKLHFLKLQHLPQLTSSGFDLETPTNTQGSNPGII 629 (937)
Q Consensus 550 ~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~i~~~~~~~L~~L~l~~c~~L~~~~~~~~~~~~~~~~~~~~~ 629 (937)
+ +..+++|++|++++|. +..+.. ...+++|+.|++.++. +..++.
T Consensus 260 ~---~~~l~~L~~L~l~~n~-l~~~~~--------------~~~l~~L~~L~L~~n~-l~~~~~---------------- 304 (466)
T 1o6v_A 260 P---LSGLTKLTELKLGANQ-ISNISP--------------LAGLTALTNLELNENQ-LEDISP---------------- 304 (466)
T ss_dssp G---GTTCTTCSEEECCSSC-CCCCGG--------------GTTCTTCSEEECCSSC-CSCCGG----------------
T ss_pred h---hhcCCCCCEEECCCCc-cCcccc--------------ccCCCccCeEEcCCCc-ccCchh----------------
Confidence 4 5688999999999974 333221 1278999999999864 333221
Q ss_pred ccCCCCCccccccccccCCCcceeeccCcccceeccCCcccccccCCCccEEEEeccCCccccchHHHHhhccccceeee
Q 002313 630 AEGDPKDFTSLFNERVVFPSLKKLKLSSINVEKIWLNSFSAIESWGKNLTKLTVEKCGRLKFLFSSSMVNGLEQLQQLDI 709 (937)
Q Consensus 630 ~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~l~~~~~~~~~~~~~~l~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~i 709 (937)
...+++|+.|++++|.++.++. ...+++|++|++++| .++.+ ..+..+++|+.|++
T Consensus 305 --------------~~~l~~L~~L~L~~n~l~~~~~------~~~l~~L~~L~l~~n-~l~~~---~~l~~l~~L~~L~l 360 (466)
T 1o6v_A 305 --------------ISNLKNLTYLTLYFNNISDISP------VSSLTKLQRLFFYNN-KVSDV---SSLANLTNINWLSA 360 (466)
T ss_dssp --------------GGGCTTCSEEECCSSCCSCCGG------GGGCTTCCEEECCSS-CCCCC---GGGTTCTTCCEEEC
T ss_pred --------------hcCCCCCCEEECcCCcCCCchh------hccCccCCEeECCCC-ccCCc---hhhccCCCCCEEeC
Confidence 2368999999999998887752 347899999999999 55554 35789999999999
Q ss_pred ccccchHHHhccCCCCCCCcccccccccceeeeccCccccccc
Q 002313 710 SHCKSMNEVINTRVGRDDNMIEMVFPKLVSLQLSHLPKLTRFG 752 (937)
Q Consensus 710 ~~c~~l~~~~~~~~~~~~~~~~~~~~~L~~L~i~~c~~l~~~~ 752 (937)
++|.-....+. ..+++|++|++.+++ ++.+|
T Consensus 361 ~~n~l~~~~~~-----------~~l~~L~~L~l~~n~-~~~~p 391 (466)
T 1o6v_A 361 GHNQISDLTPL-----------ANLTRITQLGLNDQA-WTNAP 391 (466)
T ss_dssp CSSCCCBCGGG-----------TTCTTCCEEECCCEE-EECCC
T ss_pred CCCccCccchh-----------hcCCCCCEEeccCCc-ccCCc
Confidence 99864322221 367999999998875 44444
No 27
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.91 E-value=3.9e-24 Score=240.16 Aligned_cols=145 Identities=23% Similarity=0.179 Sum_probs=62.3
Q ss_pred CCCccceeeecCCcccccCChhhhcCCCCccEEEecCCcCc-ccCccccCCCCC-------------CEEEccCCcccCc
Q 002313 230 GFLKLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFH-SLPSSLGCLINL-------------RTLSLENCLVVDV 295 (937)
Q Consensus 230 ~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~-~lp~~i~~l~~L-------------r~L~L~~~~~~~l 295 (937)
...+|++|.+.++.+ +.+|.+ ++++++|++|++++|.+. .+|..++++.+| ++|++++|.++.+
T Consensus 9 ~~~~L~~L~l~~n~l-~~iP~~-i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~l~~l 86 (454)
T 1jl5_A 9 SNTFLQEPLRHSSNL-TEMPVE-AENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGLSSL 86 (454)
T ss_dssp ---------------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTSCCSCC
T ss_pred ccccchhhhcccCch-hhCChh-HhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhccCCCEEEecCCccccC
Confidence 345555555555554 455554 355666666666665554 455555555543 5566666555554
Q ss_pred ccccCCCCCcEEecccCcCcccCcccccCccCCEEEecCCCCCcccChhhhcCCCCCcEEEcCCCcccceecCCCCCChh
Q 002313 296 AIIGDLKKLEILSLKHSSIEQLPREIGQLTCLKLLDLSNCSKLKEIRPNVISNLTRLEELYMGNSFTQWKVEGQSNASLG 375 (937)
Q Consensus 296 ~~i~~L~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~ 375 (937)
+.+ .++|++|++++|.++.+|.. +.+|++|++++| .+..++.. .++|++|++++|.+. . +.
T Consensus 87 p~~--~~~L~~L~l~~n~l~~lp~~---~~~L~~L~l~~n-~l~~l~~~----~~~L~~L~L~~n~l~--------~-lp 147 (454)
T 1jl5_A 87 PEL--PPHLESLVASCNSLTELPEL---PQSLKSLLVDNN-NLKALSDL----PPLLEYLGVSNNQLE--------K-LP 147 (454)
T ss_dssp CSC--CTTCSEEECCSSCCSSCCCC---CTTCCEEECCSS-CCSCCCSC----CTTCCEEECCSSCCS--------S-CC
T ss_pred CCC--cCCCCEEEccCCcCCccccc---cCCCcEEECCCC-ccCcccCC----CCCCCEEECcCCCCC--------C-Cc
Confidence 332 24566666666655555542 255666666553 34444321 145666666555443 1 11
Q ss_pred hhcCCCCCCeEEeecCCCCC
Q 002313 376 ELKQLSRLTTLEVHIPDAQV 395 (937)
Q Consensus 376 ~l~~l~~L~~L~l~~~~~~~ 395 (937)
.+..+++|+.|+++++.+..
T Consensus 148 ~~~~l~~L~~L~l~~N~l~~ 167 (454)
T 1jl5_A 148 ELQNSSFLKIIDVDNNSLKK 167 (454)
T ss_dssp CCTTCTTCCEEECCSSCCSC
T ss_pred ccCCCCCCCEEECCCCcCcc
Confidence 35555566666665554443
No 28
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.91 E-value=9.5e-24 Score=239.76 Aligned_cols=145 Identities=18% Similarity=0.237 Sum_probs=73.7
Q ss_pred EEEccCCCCccCCcccCCCccceeeecCCcccccCChhhhcCCCCccEEEecCCcCc-cc-CccccCCCCCCEEEccCCc
Q 002313 214 AISIPFRGIYELPERLGFLKLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFH-SL-PSSLGCLINLRTLSLENCL 291 (937)
Q Consensus 214 ~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~-~l-p~~i~~l~~Lr~L~L~~~~ 291 (937)
.++.+++.+..+|. -.+++++|++++|.+....|. .|+++++|++|++++|.+. .+ |..|.++++|++|++++|.
T Consensus 14 ~~~c~~~~l~~lp~--l~~~l~~L~Ls~n~i~~~~~~-~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~ 90 (455)
T 3v47_A 14 NAICINRGLHQVPE--LPAHVNYVDLSLNSIAELNET-SFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQ 90 (455)
T ss_dssp EEECCSSCCSSCCC--CCTTCCEEECCSSCCCEECTT-TTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCT
T ss_pred ccCcCCCCcccCCC--CCCccCEEEecCCccCcCChh-HhccCccccEEECcCCcccceECcccccccccCCEEeCCCCc
Confidence 34444445555554 124555555555544332232 2455555666666555553 33 3445555556666665555
Q ss_pred ccCc--ccccCCCCCcEEecccCcCcc-cCcc--cccCccCCEEEecCCCCCccc-ChhhhcCCCCCcEEEcCCCcc
Q 002313 292 VVDV--AIIGDLKKLEILSLKHSSIEQ-LPRE--IGQLTCLKLLDLSNCSKLKEI-RPNVISNLTRLEELYMGNSFT 362 (937)
Q Consensus 292 ~~~l--~~i~~L~~L~~L~L~~~~l~~-lp~~--i~~L~~L~~L~l~~~~~l~~l-p~~~l~~L~~L~~L~l~~~~~ 362 (937)
+..+ ..++++++|++|++++|.++. +|.. ++++++|++|++++|. +..+ |...++++++|++|++++|.+
T Consensus 91 l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~~l~~L~~L~L~~n~l 166 (455)
T 3v47_A 91 FLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNN-IKKIQPASFFLNMRRFHVLDLTFNKV 166 (455)
T ss_dssp TCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSB-CCSCCCCGGGGGCTTCCEEECTTCCB
T ss_pred cCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCc-cCccCcccccCCCCcccEEeCCCCcc
Confidence 5433 345555556666665555543 2222 5555556666665533 3333 322245555666666555544
No 29
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=99.90 E-value=1.4e-24 Score=249.67 Aligned_cols=171 Identities=14% Similarity=0.136 Sum_probs=132.0
Q ss_pred CCCcccCCCCCHHHHHHHHHHHhCCCCCCCchhHHHHHHHHhcCCCchHHHHHHHHhcCCChhHHHHHHHHhhcCCCCCc
Q 002313 6 YSEDFLDWLLSNEEASHLFEKIVGHSAKKSDFETIGVEIVAKCGGLPIAIKTIANALKNKSPRIWKDAVNQLSNSNPRKI 85 (937)
Q Consensus 6 ~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~i~~~i~~kc~GlPLai~~ig~~L~~~~~~~W~~~l~~l~~~~~~~~ 85 (937)
+..+|+|++|+++|||+||.++|+....++++++++++|+++|+|+||||+++|+.|+.++ |+.+ +.+.+.. ++.
T Consensus 284 ~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~I~~~c~GlPLAl~~~g~~l~~~~---w~~~-~~l~~~l-~~~ 358 (549)
T 2a5y_B 284 TCEFIEVTSLEIDECYDFLEAYGMPMPVGEKEEDVLNKTIELSSGNPATLMMFFKSCEPKT---FEKM-AQLNNKL-ESR 358 (549)
T ss_dssp CEEEEECCCCCHHHHHHHHHHTSCCCC--CHHHHHHHHHHHHHTTCHHHHHHHHTTCCSSS---HHHH-HHHHHHH-HHH
T ss_pred CCeEEECCCCCHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHhCCChHHHHHHHHHhccch---HHHH-HHhHHHh-hcc
Confidence 3367999999999999999999965444688999999999999999999999999998774 4443 3333211 000
Q ss_pred cccccccccccccccccCchhHHHHHH-----------HhcCCCCCCcccHHHHHHHHhhc--ccccCcc---hHHHHHH
Q 002313 86 QGMDADLSSIELSYEFLKCKEVKSLFQ-----------LCGLLKDGSRIAVDDLLRYVMGL--RLLTNAD---TLEAARN 149 (937)
Q Consensus 86 ~~~~~~~~~l~~sY~~L~~~~lk~cfl-----------~~~~fp~~~~i~~~~li~~w~a~--g~~~~~~---~~~~~~~ 149 (937)
...+..+++++||++||.+ +|.||+ |||+||+|+.|+ +++|+|+ ||+.... +.+++++
T Consensus 359 -~~~~i~~~l~~Sy~~L~~~-lk~~f~~Ls~~er~l~~~ls~fp~~~~i~----i~~w~a~~~G~i~~~~~~~~~~~~~~ 432 (549)
T 2a5y_B 359 -GLVGVECITPYSYKSLAMA-LQRCVEVLSDEDRSALAFAVVMPPGVDIP----VKLWSCVIPVDICSNEEEQLDDEVAD 432 (549)
T ss_dssp -CSSTTCCCSSSSSSSHHHH-HHHHHHTSCHHHHHHTTGGGSSCTTCCEE----HHHHHHHSCC-------CCCTHHHHH
T ss_pred -cHHHHHHHHhcccccccHH-HHHHHhccchhhhhHhhheeeeCCCCeee----eeeeeeeccceeccCCCCCCHHHHHH
Confidence 1223388999999999998 999999 999999999999 8999999 9996532 3344432
Q ss_pred HHHHHHHHHhhcccccccC--CCCceeeehhhHHHHHHHHhhcc
Q 002313 150 RVHTLIDNLKSASLLFDGD--SEDHAKMHRIIHAIAVSIAAEKL 191 (937)
Q Consensus 150 ~~~~~~~~L~~~~~~~~~~--~~~~~~mhd~i~~la~~~~~~e~ 191 (937)
++++|++++|++..+ ....|+|||+||++|..++.+++
T Consensus 433 ----~l~~L~~rsLl~~~~~~~~~~~~mHdlv~~~a~~~~~~~~ 472 (549)
T 2a5y_B 433 ----RLKRLSKRGALLSGKRMPVLTFKIDHIIHMFLKHVVDAQT 472 (549)
T ss_dssp ----HHHHTTTBSSCSEEECSSSCEEECCHHHHHHHHTTSCTHH
T ss_pred ----HHHHHHHcCCeeEecCCCceEEEeChHHHHHHHHHHHHHH
Confidence 799999999998753 34579999999999998887664
No 30
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.90 E-value=1.4e-22 Score=224.74 Aligned_cols=155 Identities=16% Similarity=0.286 Sum_probs=123.9
Q ss_pred CcccCCCccceeeecCCcccccCChhhhcCCCCccEEEecCCcCcccC-ccccCCCCCCEEEccCCcccCc--ccccCCC
Q 002313 226 PERLGFLKLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHSLP-SSLGCLINLRTLSLENCLVVDV--AIIGDLK 302 (937)
Q Consensus 226 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~lp-~~i~~l~~Lr~L~L~~~~~~~l--~~i~~L~ 302 (937)
+....+.++++|++.++. ...+|..+|..+++|++|++++|.+..+| ..|+.+++|++|++++|.+..+ ..+++++
T Consensus 39 ~~~~~l~~l~~l~l~~~~-l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~ 117 (390)
T 3o6n_A 39 FEDITLNNQKIVTFKNST-MRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVP 117 (390)
T ss_dssp CSSGGGCCCSEEEEESCE-ESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCT
T ss_pred ccccccCCceEEEecCCc-hhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCC
Confidence 334467888999988776 45688888889999999999999998875 4789999999999999988876 5588999
Q ss_pred CCcEEecccCcCcccCcc-cccCccCCEEEecCCCCCcccChhhhcCCCCCcEEEcCCCcccceecCCCCCChhhhcCCC
Q 002313 303 KLEILSLKHSSIEQLPRE-IGQLTCLKLLDLSNCSKLKEIRPNVISNLTRLEELYMGNSFTQWKVEGQSNASLGELKQLS 381 (937)
Q Consensus 303 ~L~~L~L~~~~l~~lp~~-i~~L~~L~~L~l~~~~~l~~lp~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~ 381 (937)
+|++|++++|.++.+|.. ++++++|++|++++| .+..+++..++.+++|++|++++|.+. .. .+..++
T Consensus 118 ~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~-------~~---~~~~l~ 186 (390)
T 3o6n_A 118 LLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNN-NLERIEDDTFQATTSLQNLQLSSNRLT-------HV---DLSLIP 186 (390)
T ss_dssp TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCBCCTTTTSSCTTCCEEECCSSCCS-------BC---CGGGCT
T ss_pred CCCEEECCCCccCcCCHHHhcCCCCCcEEECCCC-ccCccChhhccCCCCCCEEECCCCcCC-------cc---cccccc
Confidence 999999999999999876 488999999999985 477777666888999999999888654 11 245566
Q ss_pred CCCeEEeecCC
Q 002313 382 RLTTLEVHIPD 392 (937)
Q Consensus 382 ~L~~L~l~~~~ 392 (937)
+|+.++++++.
T Consensus 187 ~L~~L~l~~n~ 197 (390)
T 3o6n_A 187 SLFHANVSYNL 197 (390)
T ss_dssp TCSEEECCSSC
T ss_pred ccceeeccccc
Confidence 77777776654
No 31
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.90 E-value=2.1e-23 Score=234.16 Aligned_cols=345 Identities=15% Similarity=0.095 Sum_probs=206.1
Q ss_pred cCCCcEEEccCCCCccCCccc-CCCccceeeecCCcccccCChhhhcCCCCc-------------cEEEecCCcCcccCc
Q 002313 209 DEAPTAISIPFRGIYELPERL-GFLKLKLFLFFTENLSLQIPDPFFEGMTEL-------------RVLDLTGFRFHSLPS 274 (937)
Q Consensus 209 ~~~l~~l~l~~~~~~~l~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L-------------r~L~L~~~~~~~lp~ 274 (937)
...++.++++++.+..+|..+ .+++|++|++.+|...+.+|..+ +++++| ++|++++|.++.+|.
T Consensus 10 ~~~L~~L~l~~n~l~~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~-~~l~~L~~l~l~~c~~~~l~~L~l~~~~l~~lp~ 88 (454)
T 1jl5_A 10 NTFLQEPLRHSSNLTEMPVEAENVKSKTEYYNAWSEWERNAPPGN-GEQREMAVSRLRDCLDRQAHELELNNLGLSSLPE 88 (454)
T ss_dssp ------------------------CCHHHHHHHHHHHHHTSCTTS-CCCHHHHHHHHHHHHHHTCSEEECTTSCCSCCCS
T ss_pred cccchhhhcccCchhhCChhHhcccchhhhhccCCcccccCCccc-ccchhcchhhhhhhhccCCCEEEecCCccccCCC
Confidence 457899999999998899887 79999999999998888888774 777765 999999999998887
Q ss_pred cccCCCCCCEEEccCCcccCcccccCCCCCcEEecccCcCcccCcccccCccCCEEEecCCCCCcccChhhhcCCCCCcE
Q 002313 275 SLGCLINLRTLSLENCLVVDVAIIGDLKKLEILSLKHSSIEQLPREIGQLTCLKLLDLSNCSKLKEIRPNVISNLTRLEE 354 (937)
Q Consensus 275 ~i~~l~~Lr~L~L~~~~~~~l~~i~~L~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~l~~L~~L~~ 354 (937)
. .++|++|++++|.++.++. .+.+|++|++++|.++.+|... ++|++|++++| .+..+| . ++++++|++
T Consensus 89 ~---~~~L~~L~l~~n~l~~lp~--~~~~L~~L~l~~n~l~~l~~~~---~~L~~L~L~~n-~l~~lp-~-~~~l~~L~~ 157 (454)
T 1jl5_A 89 L---PPHLESLVASCNSLTELPE--LPQSLKSLLVDNNNLKALSDLP---PLLEYLGVSNN-QLEKLP-E-LQNSSFLKI 157 (454)
T ss_dssp C---CTTCSEEECCSSCCSSCCC--CCTTCCEEECCSSCCSCCCSCC---TTCCEEECCSS-CCSSCC-C-CTTCTTCCE
T ss_pred C---cCCCCEEEccCCcCCcccc--ccCCCcEEECCCCccCcccCCC---CCCCEEECcCC-CCCCCc-c-cCCCCCCCE
Confidence 3 4789999999999887753 2488999999999988877532 68999999985 477788 3 899999999
Q ss_pred EEcCCCcccceecCCCCCChhhhcCCCCCCeEEeecCCCCCCCccccccccceeEEEecCcCCCCCCcCCcceEEEeccc
Q 002313 355 LYMGNSFTQWKVEGQSNASLGELKQLSRLTTLEVHIPDAQVMPQDLVFVELERFRICIGDVWSWSDGYETSKTLKLQLNN 434 (937)
Q Consensus 355 L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~l~l~~~~ 434 (937)
|++++|.+. + ... ...+|+.|+++++.+..+|.-..+++|+.+.+..+..-..
T Consensus 158 L~l~~N~l~----~----lp~---~~~~L~~L~L~~n~l~~l~~~~~l~~L~~L~l~~N~l~~l---------------- 210 (454)
T 1jl5_A 158 IDVDNNSLK----K----LPD---LPPSLEFIAAGNNQLEELPELQNLPFLTAIYADNNSLKKL---------------- 210 (454)
T ss_dssp EECCSSCCS----C----CCC---CCTTCCEEECCSSCCSSCCCCTTCTTCCEEECCSSCCSSC----------------
T ss_pred EECCCCcCc----c----cCC---CcccccEEECcCCcCCcCccccCCCCCCEEECCCCcCCcC----------------
Confidence 999998664 1 111 1248899999998887776433566666666543321100
Q ss_pred ccchhhhHHHHhhcccccccccccChhhhhhcccchhhcccCcEEEeecCCceEEEEccCCccccccccceecccccccc
Q 002313 435 STYLGYGMKMLLKRTEDLHLDELAGFKNVVHELDDEEGFARLRHLHVHNGPEILHILNSDGRVGTFPLLESLFLHNLINL 514 (937)
Q Consensus 435 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~l 514 (937)
+. ..++|++|+++++... .+ +.+. .+++|++|+++++.- ..+ ...+++|++|+++++ .+
T Consensus 211 --~~------~~~~L~~L~l~~n~l~-~l-p~~~---~l~~L~~L~l~~N~l-~~l------~~~~~~L~~L~l~~N-~l 269 (454)
T 1jl5_A 211 --PD------LPLSLESIVAGNNILE-EL-PELQ---NLPFLTTIYADNNLL-KTL------PDLPPSLEALNVRDN-YL 269 (454)
T ss_dssp --CC------CCTTCCEEECCSSCCS-SC-CCCT---TCTTCCEEECCSSCC-SSC------CSCCTTCCEEECCSS-CC
T ss_pred --CC------CcCcccEEECcCCcCC-cc-cccC---CCCCCCEEECCCCcC-Ccc------cccccccCEEECCCC-cc
Confidence 00 1135666666654332 22 2233 367777777776522 111 123466777777664 23
Q ss_pred cccccccccCCCCCccCCCccEEEEecCCCcccccchhHHHhhccccEEEEcccccchhhhccccccccccCCccccccc
Q 002313 515 EKVCDGKVRLNEDDKSFSNLRIIKVEGCHRVKHLFPFSLVKNLLQLQKVKVTDCTNLKLIVGKESENSAHKNGSISGVYF 594 (937)
Q Consensus 515 ~~~~~~~~~~~~~~~~l~~L~~L~l~~C~~L~~l~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~i~~~~~ 594 (937)
+.+ + ..+++|++|++++| +++.+|.. .++|++|+++++. +..+. ...
T Consensus 270 ~~l-----~-----~~~~~L~~L~ls~N-~l~~l~~~-----~~~L~~L~l~~N~-l~~i~----------------~~~ 316 (454)
T 1jl5_A 270 TDL-----P-----ELPQSLTFLDVSEN-IFSGLSEL-----PPNLYYLNASSNE-IRSLC----------------DLP 316 (454)
T ss_dssp SCC-----C-----CCCTTCCEEECCSS-CCSEESCC-----CTTCCEEECCSSC-CSEEC----------------CCC
T ss_pred ccc-----C-----cccCcCCEEECcCC-ccCcccCc-----CCcCCEEECcCCc-CCccc----------------CCc
Confidence 322 1 12366777777763 35555432 1467777776643 22221 012
Q ss_pred cccceeeccCCCCccccccCCCCCcccCCCCCCccccCCCCCccccccccccCCCcceeeccCcccceeccCCccccccc
Q 002313 595 RKLHFLKLQHLPQLTSSGFDLETPTNTQGSNPGIIAEGDPKDFTSLFNERVVFPSLKKLKLSSINVEKIWLNSFSAIESW 674 (937)
Q Consensus 595 ~~L~~L~l~~c~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~l~~~~~~~~~~~~~~ 674 (937)
++|++|+++++ .+..++. .+++|+.|++++|.++.+| . .
T Consensus 317 ~~L~~L~Ls~N-~l~~lp~--------------------------------~~~~L~~L~L~~N~l~~lp-------~-~ 355 (454)
T 1jl5_A 317 PSLEELNVSNN-KLIELPA--------------------------------LPPRLERLIASFNHLAEVP-------E-L 355 (454)
T ss_dssp TTCCEEECCSS-CCSCCCC--------------------------------CCTTCCEEECCSSCCSCCC-------C-C
T ss_pred CcCCEEECCCC-ccccccc--------------------------------cCCcCCEEECCCCcccccc-------c-h
Confidence 46667776664 2333221 1466777777777666665 2 3
Q ss_pred CCCccEEEEeccC
Q 002313 675 GKNLTKLTVEKCG 687 (937)
Q Consensus 675 l~~L~~L~i~~c~ 687 (937)
+++|++|++++|.
T Consensus 356 l~~L~~L~L~~N~ 368 (454)
T 1jl5_A 356 PQNLKQLHVEYNP 368 (454)
T ss_dssp CTTCCEEECCSSC
T ss_pred hhhccEEECCCCC
Confidence 5677777777663
No 32
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.90 E-value=1e-22 Score=228.85 Aligned_cols=166 Identities=15% Similarity=0.158 Sum_probs=126.8
Q ss_pred ccCCCcEEEccCCCCccCCcccCCCccceeeecCCcccccCChhhhcCCCCccEEEecCCcCcccCccccCCCCCCEEEc
Q 002313 208 IDEAPTAISIPFRGIYELPERLGFLKLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHSLPSSLGCLINLRTLSL 287 (937)
Q Consensus 208 ~~~~l~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~lp~~i~~l~~Lr~L~L 287 (937)
.+++++.++++++.+..+|....+++|++|++.+|.+.. +| ++.+++|++|++++|.+..+| ++++++|++|++
T Consensus 40 ~l~~L~~L~Ls~n~l~~~~~l~~l~~L~~L~Ls~n~l~~-~~---~~~l~~L~~L~Ls~N~l~~~~--~~~l~~L~~L~L 113 (457)
T 3bz5_A 40 QLATLTSLDCHNSSITDMTGIEKLTGLTKLICTSNNITT-LD---LSQNTNLTYLACDSNKLTNLD--VTPLTKLTYLNC 113 (457)
T ss_dssp HHTTCCEEECCSSCCCCCTTGGGCTTCSEEECCSSCCSC-CC---CTTCTTCSEEECCSSCCSCCC--CTTCTTCCEEEC
T ss_pred HcCCCCEEEccCCCcccChhhcccCCCCEEEccCCcCCe-Ec---cccCCCCCEEECcCCCCceee--cCCCCcCCEEEC
Confidence 356788888888888887744467888888888887543 44 577888888888888888775 788888888888
Q ss_pred cCCcccCcccccCCCCCcEEecccCcCcccCcccccCccCCEEEecCCCCCcccChhhhcCCCCCcEEEcCCCcccceec
Q 002313 288 ENCLVVDVAIIGDLKKLEILSLKHSSIEQLPREIGQLTCLKLLDLSNCSKLKEIRPNVISNLTRLEELYMGNSFTQWKVE 367 (937)
Q Consensus 288 ~~~~~~~l~~i~~L~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~l~~L~~L~~L~l~~~~~~~~~~ 367 (937)
++|.++.++ ++++++|++|++++|.++.+| ++++++|++|++++|..+..++ ++.+++|++|++++|.+.
T Consensus 114 ~~N~l~~l~-~~~l~~L~~L~l~~N~l~~l~--l~~l~~L~~L~l~~n~~~~~~~---~~~l~~L~~L~ls~n~l~---- 183 (457)
T 3bz5_A 114 DTNKLTKLD-VSQNPLLTYLNCARNTLTEID--VSHNTQLTELDCHLNKKITKLD---VTPQTQLTTLDCSFNKIT---- 183 (457)
T ss_dssp CSSCCSCCC-CTTCTTCCEEECTTSCCSCCC--CTTCTTCCEEECTTCSCCCCCC---CTTCTTCCEEECCSSCCC----
T ss_pred CCCcCCeec-CCCCCcCCEEECCCCccceec--cccCCcCCEEECCCCCcccccc---cccCCcCCEEECCCCccc----
Confidence 888887765 788888888888888888774 7788888888888876666662 677888888888887654
Q ss_pred CCCCCChhhhcCCCCCCeEEeecCCCCC
Q 002313 368 GQSNASLGELKQLSRLTTLEVHIPDAQV 395 (937)
Q Consensus 368 ~~~~~~~~~l~~l~~L~~L~l~~~~~~~ 395 (937)
+ +. +..+++|+.|+++++.+..
T Consensus 184 ~-----l~-l~~l~~L~~L~l~~N~l~~ 205 (457)
T 3bz5_A 184 E-----LD-VSQNKLLNRLNCDTNNITK 205 (457)
T ss_dssp C-----CC-CTTCTTCCEEECCSSCCSC
T ss_pred e-----ec-cccCCCCCEEECcCCcCCe
Confidence 1 11 6667778888887765543
No 33
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.90 E-value=1.9e-22 Score=220.00 Aligned_cols=170 Identities=19% Similarity=0.252 Sum_probs=92.7
Q ss_pred ccCCCcEEEccCCCCccCCcccCCCccceeeecCCcccccCChhhhcCCCCccEEEecCCcCcccCccccCCCCCCEEEc
Q 002313 208 IDEAPTAISIPFRGIYELPERLGFLKLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHSLPSSLGCLINLRTLSL 287 (937)
Q Consensus 208 ~~~~l~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~lp~~i~~l~~Lr~L~L 287 (937)
..+++++++++++.+..++....+++|++|++.+|... .++. |..+++|++|++++|.+..+| .+.++++|++|++
T Consensus 42 ~l~~L~~L~l~~~~i~~~~~~~~~~~L~~L~l~~n~i~-~~~~--~~~l~~L~~L~L~~n~i~~~~-~~~~l~~L~~L~l 117 (347)
T 4fmz_A 42 ELESITKLVVAGEKVASIQGIEYLTNLEYLNLNGNQIT-DISP--LSNLVKLTNLYIGTNKITDIS-ALQNLTNLRELYL 117 (347)
T ss_dssp HHTTCSEEECCSSCCCCCTTGGGCTTCCEEECCSSCCC-CCGG--GTTCTTCCEEECCSSCCCCCG-GGTTCTTCSEEEC
T ss_pred hcccccEEEEeCCccccchhhhhcCCccEEEccCCccc-cchh--hhcCCcCCEEEccCCcccCch-HHcCCCcCCEEEC
Confidence 35567777777766666654335566666666555432 3333 455666666666666655554 3556666666666
Q ss_pred cCCcccCcccccCCCCCcEEecccCcCcccCcccccCccCCEEEecCCCCCcccChhhhcCCCCCcEEEcCCCcccceec
Q 002313 288 ENCLVVDVAIIGDLKKLEILSLKHSSIEQLPREIGQLTCLKLLDLSNCSKLKEIRPNVISNLTRLEELYMGNSFTQWKVE 367 (937)
Q Consensus 288 ~~~~~~~l~~i~~L~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~l~~L~~L~~L~l~~~~~~~~~~ 367 (937)
++|.+..++.+..+++|++|++++|.....+..++.+++|++|++++|. +..++. ++.+++|++|++++|.+.
T Consensus 118 ~~n~i~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~l~~L~~L~l~~~~-~~~~~~--~~~l~~L~~L~l~~n~l~---- 190 (347)
T 4fmz_A 118 NEDNISDISPLANLTKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTESK-VKDVTP--IANLTDLYSLSLNYNQIE---- 190 (347)
T ss_dssp TTSCCCCCGGGTTCTTCCEEECTTCTTCCCCGGGTTCTTCCEEECCSSC-CCCCGG--GGGCTTCSEEECTTSCCC----
T ss_pred cCCcccCchhhccCCceeEEECCCCCCcccccchhhCCCCcEEEecCCC-cCCchh--hccCCCCCEEEccCCccc----
Confidence 6666555544556666666666665333333335566666666666533 444443 555566666666555432
Q ss_pred CCCCCChhhhcCCCCCCeEEeecCCC
Q 002313 368 GQSNASLGELKQLSRLTTLEVHIPDA 393 (937)
Q Consensus 368 ~~~~~~~~~l~~l~~L~~L~l~~~~~ 393 (937)
.+..+..+++|+.++++++.+
T Consensus 191 -----~~~~~~~l~~L~~L~l~~n~l 211 (347)
T 4fmz_A 191 -----DISPLASLTSLHYFTAYVNQI 211 (347)
T ss_dssp -----CCGGGGGCTTCCEEECCSSCC
T ss_pred -----ccccccCCCccceeecccCCC
Confidence 111244555555555555433
No 34
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.89 E-value=1.1e-22 Score=231.07 Aligned_cols=370 Identities=17% Similarity=0.177 Sum_probs=254.9
Q ss_pred cCcchhhhhhccCCCcEEEccCCCCccC-Cccc-CCCccceeeecCCcccccCChhhhcCCCCccEEEecCCcCccc-Cc
Q 002313 198 VADLKEELDKIDEAPTAISIPFRGIYEL-PERL-GFLKLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHSL-PS 274 (937)
Q Consensus 198 ~~~~~~~~~~~~~~l~~l~l~~~~~~~l-~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~l-p~ 274 (937)
+.++..+|. .++++++|++++|.+..+ +..+ .+++|++|++.+|.....++...|.++++|++|++++|.+..+ |.
T Consensus 19 ~~~l~~lp~-l~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~ 97 (455)
T 3v47_A 19 NRGLHQVPE-LPAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETG 97 (455)
T ss_dssp SSCCSSCCC-CCTTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTT
T ss_pred CCCcccCCC-CCCccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChh
Confidence 345566666 678999999999999987 4444 7999999999999887778777789999999999999999876 88
Q ss_pred cccCCCCCCEEEccCCcccC--ccc--ccCCCCCcEEecccCcCccc-Ccc-cccCccCCEEEecCCCCCcccChhhhcC
Q 002313 275 SLGCLINLRTLSLENCLVVD--VAI--IGDLKKLEILSLKHSSIEQL-PRE-IGQLTCLKLLDLSNCSKLKEIRPNVISN 348 (937)
Q Consensus 275 ~i~~l~~Lr~L~L~~~~~~~--l~~--i~~L~~L~~L~L~~~~l~~l-p~~-i~~L~~L~~L~l~~~~~l~~lp~~~l~~ 348 (937)
.|+++++|++|++++|.+.. +.. ++++++|++|++++|.+..+ |.. ++++++|++|++++|. +..+++..++.
T Consensus 98 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~l~~ 176 (455)
T 3v47_A 98 AFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNK-VKSICEEDLLN 176 (455)
T ss_dssp TTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCC-BSCCCTTTSGG
T ss_pred hccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCc-ccccChhhhhc
Confidence 89999999999999999986 333 99999999999999999987 544 8999999999999965 66665555776
Q ss_pred C--CCCcEEEcCCCcccceecCCCCCC-----hhhhcCCCCCCeEEeecCCCCCCCcc-c----cccccceeEEEecCcC
Q 002313 349 L--TRLEELYMGNSFTQWKVEGQSNAS-----LGELKQLSRLTTLEVHIPDAQVMPQD-L----VFVELERFRICIGDVW 416 (937)
Q Consensus 349 L--~~L~~L~l~~~~~~~~~~~~~~~~-----~~~l~~l~~L~~L~l~~~~~~~~~~~-~----~~~~L~~l~l~~~~~~ 416 (937)
+ .+|+.|+++++.+. +..... ...+..+++|+.|+++++.+...... + ...+++.+.+..+...
T Consensus 177 l~~~~L~~L~l~~n~l~----~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 252 (455)
T 3v47_A 177 FQGKHFTLLRLSSITLQ----DMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNM 252 (455)
T ss_dssp GTTCEEEEEECTTCBCT----TCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTT
T ss_pred cccccccccccccCccc----ccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeecccccc
Confidence 6 78999999988664 111111 12244567899999998876432221 1 2256666665433211
Q ss_pred CCCCCcCCcceEEEecccccchhhhHHHHhhcccccccccccChhhhhhcccchhhcccCcEEEeecCCceEEEEccCCc
Q 002313 417 SWSDGYETSKTLKLQLNNSTYLGYGMKMLLKRTEDLHLDELAGFKNVVHELDDEEGFARLRHLHVHNGPEILHILNSDGR 496 (937)
Q Consensus 417 ~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~ 496 (937)
............ .... ..+ -..++|+.|+++++.........+.. +++|++|+++++.-. .+. +..
T Consensus 253 ~~~~~~~~~~~~-----~~~~-~~~--~~~~~L~~L~l~~n~l~~~~~~~~~~---l~~L~~L~Ls~n~l~-~~~--~~~ 318 (455)
T 3v47_A 253 GSSFGHTNFKDP-----DNFT-FKG--LEASGVKTCDLSKSKIFALLKSVFSH---FTDLEQLTLAQNEIN-KID--DNA 318 (455)
T ss_dssp SCCTTCCSSCCC-----CTTT-TGG--GTTSCCCEEECCSSCCCEECTTTTTT---CTTCCEEECTTSCCC-EEC--TTT
T ss_pred ccccchhhhccC-----cccc-ccc--ccccCceEEEecCccccccchhhccc---CCCCCEEECCCCccc-ccC--hhH
Confidence 100000000000 0000 000 01357888888876554444444544 889999999887543 331 223
Q ss_pred cccccccceecccccccccccccccccCCCCCccCCCccEEEEecCCCcccccchhHHHhhccccEEEEcccccchhhhc
Q 002313 497 VGTFPLLESLFLHNLINLEKVCDGKVRLNEDDKSFSNLRIIKVEGCHRVKHLFPFSLVKNLLQLQKVKVTDCTNLKLIVG 576 (937)
Q Consensus 497 ~~~~p~L~~L~l~~~~~l~~~~~~~~~~~~~~~~l~~L~~L~l~~C~~L~~l~~~~~~~~l~~L~~L~i~~c~~l~~~~~ 576 (937)
...+++|++|+++++ .+..+.... ...+++|++|++++| +++.+++ ..+..+++|++|+++++ .++.++.
T Consensus 319 ~~~l~~L~~L~Ls~N-~l~~~~~~~------~~~l~~L~~L~Ls~N-~l~~~~~-~~~~~l~~L~~L~L~~N-~l~~~~~ 388 (455)
T 3v47_A 319 FWGLTHLLKLNLSQN-FLGSIDSRM------FENLDKLEVLDLSYN-HIRALGD-QSFLGLPNLKELALDTN-QLKSVPD 388 (455)
T ss_dssp TTTCTTCCEEECCSS-CCCEECGGG------GTTCTTCCEEECCSS-CCCEECT-TTTTTCTTCCEEECCSS-CCSCCCT
T ss_pred hcCcccCCEEECCCC-ccCCcChhH------hcCcccCCEEECCCC-cccccCh-hhccccccccEEECCCC-ccccCCH
Confidence 356789999999886 444432221 346889999999985 5676654 45677899999999985 4554442
Q ss_pred cccccccccCCccccccccccceeeccCCCCcc
Q 002313 577 KESENSAHKNGSISGVYFRKLHFLKLQHLPQLT 609 (937)
Q Consensus 577 ~~~~~~~~~~~~i~~~~~~~L~~L~l~~c~~L~ 609 (937)
.. + ..+++|++|++++++--.
T Consensus 389 ~~----------~--~~l~~L~~L~l~~N~l~~ 409 (455)
T 3v47_A 389 GI----------F--DRLTSLQKIWLHTNPWDC 409 (455)
T ss_dssp TT----------T--TTCTTCCEEECCSSCBCC
T ss_pred hH----------h--ccCCcccEEEccCCCccc
Confidence 11 1 278899999998876443
No 35
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.89 E-value=1.6e-21 Score=222.51 Aligned_cols=171 Identities=21% Similarity=0.265 Sum_probs=116.1
Q ss_pred cEEEccCCCCccCCcccCCCccceeeecCCcccccCChhhhcCCCCccEEEecCCcCccc-CccccCCCCCCEEEccCCc
Q 002313 213 TAISIPFRGIYELPERLGFLKLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHSL-PSSLGCLINLRTLSLENCL 291 (937)
Q Consensus 213 ~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~l-p~~i~~l~~Lr~L~L~~~~ 291 (937)
+.++.+++.+..+|..+ .+++++|++.+|.+.. ++...|.++++|++|+|++|.+..+ |..|+++++|++|++++|.
T Consensus 14 ~~v~c~~~~l~~ip~~~-~~~l~~L~L~~n~l~~-~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~ 91 (477)
T 2id5_A 14 RAVLCHRKRFVAVPEGI-PTETRLLDLGKNRIKT-LNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNR 91 (477)
T ss_dssp TEEECCSCCCSSCCSCC-CTTCSEEECCSSCCCE-ECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred CEEEeCCCCcCcCCCCC-CCCCcEEECCCCccce-ECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCc
Confidence 45666667777777655 3567777777776543 3334467778888888888877766 6677778888888888777
Q ss_pred ccCc--ccccCCCCCcEEecccCcCccc-CcccccCccCCEEEecCCCCCcccChhhhcCCCCCcEEEcCCCcccceecC
Q 002313 292 VVDV--AIIGDLKKLEILSLKHSSIEQL-PREIGQLTCLKLLDLSNCSKLKEIRPNVISNLTRLEELYMGNSFTQWKVEG 368 (937)
Q Consensus 292 ~~~l--~~i~~L~~L~~L~L~~~~l~~l-p~~i~~L~~L~~L~l~~~~~l~~lp~~~l~~L~~L~~L~l~~~~~~~~~~~ 368 (937)
+..+ ..++++++|++|++++|.+..+ |..+.++++|++|++++| .+..+++..++.+++|++|++++|.+.
T Consensus 92 l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~----- 165 (477)
T 2id5_A 92 LKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDN-DLVYISHRAFSGLNSLEQLTLEKCNLT----- 165 (477)
T ss_dssp CCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCT-TCCEECTTSSTTCTTCCEEEEESCCCS-----
T ss_pred CCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCC-ccceeChhhccCCCCCCEEECCCCcCc-----
Confidence 7766 3467777788888877777655 346777777777777774 356665555777777777777776543
Q ss_pred CCCCChhhhcCCCCCCeEEeecCCC
Q 002313 369 QSNASLGELKQLSRLTTLEVHIPDA 393 (937)
Q Consensus 369 ~~~~~~~~l~~l~~L~~L~l~~~~~ 393 (937)
......+..+++|+.|+++.+.+
T Consensus 166 --~~~~~~l~~l~~L~~L~l~~n~i 188 (477)
T 2id5_A 166 --SIPTEALSHLHGLIVLRLRHLNI 188 (477)
T ss_dssp --SCCHHHHTTCTTCCEEEEESCCC
T ss_pred --ccChhHhcccCCCcEEeCCCCcC
Confidence 22334566666777777766543
No 36
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.88 E-value=1e-21 Score=229.92 Aligned_cols=154 Identities=16% Similarity=0.300 Sum_probs=124.0
Q ss_pred cccCCCccceeeecCCcccccCChhhhcCCCCccEEEecCCcCcccC-ccccCCCCCCEEEccCCcccCc--ccccCCCC
Q 002313 227 ERLGFLKLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHSLP-SSLGCLINLRTLSLENCLVVDV--AIIGDLKK 303 (937)
Q Consensus 227 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~lp-~~i~~l~~Lr~L~L~~~~~~~l--~~i~~L~~ 303 (937)
..+.+.+++.+++.++.+ ..+|..+|+.+++|++|++++|.+..+| ..|+.+++|++|++++|.+..+ ..++++++
T Consensus 46 ~~l~l~~l~~l~l~~~~l-~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~ 124 (597)
T 3oja_B 46 EDITLNNQKIVTFKNSTM-RKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPL 124 (597)
T ss_dssp SSGGGCCCSEEEESSCEE-SEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTT
T ss_pred ccccCCCceEEEeeCCCC-CCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCC
Confidence 344577889999887764 5688888899999999999999998775 4899999999999999998876 45789999
Q ss_pred CcEEecccCcCcccCcc-cccCccCCEEEecCCCCCcccChhhhcCCCCCcEEEcCCCcccceecCCCCCChhhhcCCCC
Q 002313 304 LEILSLKHSSIEQLPRE-IGQLTCLKLLDLSNCSKLKEIRPNVISNLTRLEELYMGNSFTQWKVEGQSNASLGELKQLSR 382 (937)
Q Consensus 304 L~~L~L~~~~l~~lp~~-i~~L~~L~~L~l~~~~~l~~lp~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~ 382 (937)
|++|++++|.++.+|.. ++++++|++|++++| .+..+++..++.+++|++|++++|.+. + . .+..+++
T Consensus 125 L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~L~~N~l~----~---~---~~~~l~~ 193 (597)
T 3oja_B 125 LTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNN-NLERIEDDTFQATTSLQNLQLSSNRLT----H---V---DLSLIPS 193 (597)
T ss_dssp CCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCBCCTTTTTTCTTCCEEECTTSCCS----B---C---CGGGCTT
T ss_pred CCEEEeeCCCCCCCCHHHhccCCCCCEEEeeCC-cCCCCChhhhhcCCcCcEEECcCCCCC----C---c---Chhhhhh
Confidence 99999999999999876 489999999999985 477777766889999999999888654 1 1 2445667
Q ss_pred CCeEEeecCC
Q 002313 383 LTTLEVHIPD 392 (937)
Q Consensus 383 L~~L~l~~~~ 392 (937)
|+.|+++++.
T Consensus 194 L~~L~l~~n~ 203 (597)
T 3oja_B 194 LFHANVSYNL 203 (597)
T ss_dssp CSEEECCSSC
T ss_pred hhhhhcccCc
Confidence 7777776653
No 37
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.88 E-value=3.6e-21 Score=209.77 Aligned_cols=303 Identities=17% Similarity=0.238 Sum_probs=215.9
Q ss_pred CCCccceeeecCCcccccCChhhhcCCCCccEEEecCCcCcccCccccCCCCCCEEEccCCcccCcccccCCCCCcEEec
Q 002313 230 GFLKLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHSLPSSLGCLINLRTLSLENCLVVDVAIIGDLKKLEILSL 309 (937)
Q Consensus 230 ~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~lp~~i~~l~~Lr~L~L~~~~~~~l~~i~~L~~L~~L~L 309 (937)
.+++|++|++.++... .++. +..+++|++|++++|.+..+|. +..+++|++|++++|.+..++.++++++|++|++
T Consensus 42 ~l~~L~~L~l~~~~i~-~~~~--~~~~~~L~~L~l~~n~i~~~~~-~~~l~~L~~L~L~~n~i~~~~~~~~l~~L~~L~l 117 (347)
T 4fmz_A 42 ELESITKLVVAGEKVA-SIQG--IEYLTNLEYLNLNGNQITDISP-LSNLVKLTNLYIGTNKITDISALQNLTNLRELYL 117 (347)
T ss_dssp HHTTCSEEECCSSCCC-CCTT--GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCGGGTTCTTCSEEEC
T ss_pred hcccccEEEEeCCccc-cchh--hhhcCCccEEEccCCccccchh-hhcCCcCCEEEccCCcccCchHHcCCCcCCEEEC
Confidence 5778888888887653 4554 6788889999999888888876 8888889999998888888888888889999999
Q ss_pred ccCcCcccCcccccCccCCEEEecCCCCCcccChhhhcCCCCCcEEEcCCCcccceecCCCCCChhhhcCCCCCCeEEee
Q 002313 310 KHSSIEQLPREIGQLTCLKLLDLSNCSKLKEIRPNVISNLTRLEELYMGNSFTQWKVEGQSNASLGELKQLSRLTTLEVH 389 (937)
Q Consensus 310 ~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~ 389 (937)
++|.+..+|. +..+++|++|++++|.....++. ++.+++|++|++++|.+. ....+..+++|+.|+++
T Consensus 118 ~~n~i~~~~~-~~~l~~L~~L~l~~n~~~~~~~~--~~~l~~L~~L~l~~~~~~---------~~~~~~~l~~L~~L~l~ 185 (347)
T 4fmz_A 118 NEDNISDISP-LANLTKMYSLNLGANHNLSDLSP--LSNMTGLNYLTVTESKVK---------DVTPIANLTDLYSLSLN 185 (347)
T ss_dssp TTSCCCCCGG-GTTCTTCCEEECTTCTTCCCCGG--GTTCTTCCEEECCSSCCC---------CCGGGGGCTTCSEEECT
T ss_pred cCCcccCchh-hccCCceeEEECCCCCCcccccc--hhhCCCCcEEEecCCCcC---------CchhhccCCCCCEEEcc
Confidence 8888888876 88888899999888776666654 788888999988887653 12237778888888888
Q ss_pred cCCCCCCCccccccccceeEEEecCcCCCCCCcCCcceEEEecccccchhhhHHHHhhcccccccccccChhhhhhcccc
Q 002313 390 IPDAQVMPQDLVFVELERFRICIGDVWSWSDGYETSKTLKLQLNNSTYLGYGMKMLLKRTEDLHLDELAGFKNVVHELDD 469 (937)
Q Consensus 390 ~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~ 469 (937)
++.+..++.....++|+.+.+..+..... .. ...+++|+.|+++++.... .. .+
T Consensus 186 ~n~l~~~~~~~~l~~L~~L~l~~n~l~~~--------------------~~--~~~~~~L~~L~l~~n~l~~-~~-~~-- 239 (347)
T 4fmz_A 186 YNQIEDISPLASLTSLHYFTAYVNQITDI--------------------TP--VANMTRLNSLKIGNNKITD-LS-PL-- 239 (347)
T ss_dssp TSCCCCCGGGGGCTTCCEEECCSSCCCCC--------------------GG--GGGCTTCCEEECCSSCCCC-CG-GG--
T ss_pred CCcccccccccCCCccceeecccCCCCCC--------------------ch--hhcCCcCCEEEccCCccCC-Cc-ch--
Confidence 88777666533556666665543321110 00 2245677777777754322 11 13
Q ss_pred hhhcccCcEEEeecCCceEEEEccCCccccccccceecccccccccccccccccCCCCCccCCCccEEEEecCCCccccc
Q 002313 470 EEGFARLRHLHVHNGPEILHILNSDGRVGTFPLLESLFLHNLINLEKVCDGKVRLNEDDKSFSNLRIIKVEGCHRVKHLF 549 (937)
Q Consensus 470 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~l~~~~~~~~~~~~~~~~l~~L~~L~l~~C~~L~~l~ 549 (937)
..+++|++|+++++. +..+ .....+++|++|+++++ .++.+. ....+++|+.|++++|+ ++..+
T Consensus 240 -~~l~~L~~L~l~~n~-l~~~----~~~~~l~~L~~L~l~~n-~l~~~~--------~~~~l~~L~~L~L~~n~-l~~~~ 303 (347)
T 4fmz_A 240 -ANLSQLTWLEIGTNQ-ISDI----NAVKDLTKLKMLNVGSN-QISDIS--------VLNNLSQLNSLFLNNNQ-LGNED 303 (347)
T ss_dssp -TTCTTCCEEECCSSC-CCCC----GGGTTCTTCCEEECCSS-CCCCCG--------GGGGCTTCSEEECCSSC-CCGGG
T ss_pred -hcCCCCCEEECCCCc-cCCC----hhHhcCCCcCEEEccCC-ccCCCh--------hhcCCCCCCEEECcCCc-CCCcC
Confidence 348889999998873 3222 22367888999999886 454431 13578899999999974 55554
Q ss_pred chhHHHhhccccEEEEcccccchhhhccccccccccCCccccccccccceeeccCCC
Q 002313 550 PFSLVKNLLQLQKVKVTDCTNLKLIVGKESENSAHKNGSISGVYFRKLHFLKLQHLP 606 (937)
Q Consensus 550 ~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~i~~~~~~~L~~L~l~~c~ 606 (937)
+ ..+..+++|++|++++|+ ++.+.. ...+++|++|++.+++
T Consensus 304 ~-~~l~~l~~L~~L~L~~n~-l~~~~~--------------~~~l~~L~~L~l~~N~ 344 (347)
T 4fmz_A 304 M-EVIGGLTNLTTLFLSQNH-ITDIRP--------------LASLSKMDSADFANQV 344 (347)
T ss_dssp H-HHHHTCTTCSEEECCSSS-CCCCGG--------------GGGCTTCSEESSSCC-
T ss_pred h-hHhhccccCCEEEccCCc-cccccC--------------hhhhhccceeehhhhc
Confidence 3 557789999999999986 443321 1378899999998875
No 38
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.88 E-value=2.5e-21 Score=217.43 Aligned_cols=310 Identities=21% Similarity=0.191 Sum_probs=202.9
Q ss_pred CCCccceeeecCCcccccCChhhhcCCCCccEEEecCCcCcccCccccCCCCCCEEEccCCcccCcccccCCCCCcEEec
Q 002313 230 GFLKLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHSLPSSLGCLINLRTLSLENCLVVDVAIIGDLKKLEILSL 309 (937)
Q Consensus 230 ~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~lp~~i~~l~~Lr~L~L~~~~~~~l~~i~~L~~L~~L~L 309 (937)
.+++|++|++.++.+. .+| . |..+++|++|++++|.+..+| ++.+++|++|++++|.++.++ ++++++|++|++
T Consensus 40 ~l~~L~~L~Ls~n~l~-~~~-~-l~~l~~L~~L~Ls~n~l~~~~--~~~l~~L~~L~Ls~N~l~~~~-~~~l~~L~~L~L 113 (457)
T 3bz5_A 40 QLATLTSLDCHNSSIT-DMT-G-IEKLTGLTKLICTSNNITTLD--LSQNTNLTYLACDSNKLTNLD-VTPLTKLTYLNC 113 (457)
T ss_dssp HHTTCCEEECCSSCCC-CCT-T-GGGCTTCSEEECCSSCCSCCC--CTTCTTCSEEECCSSCCSCCC-CTTCTTCCEEEC
T ss_pred HcCCCCEEEccCCCcc-cCh-h-hcccCCCCEEEccCCcCCeEc--cccCCCCCEEECcCCCCceee-cCCCCcCCEEEC
Confidence 5789999999998765 456 3 688999999999999999886 889999999999999988875 899999999999
Q ss_pred ccCcCcccCcccccCccCCEEEecCCCCCcccChhhhcCCCCCcEEEcCCCcccceecCCCCCChhhhcCCCCCCeEEee
Q 002313 310 KHSSIEQLPREIGQLTCLKLLDLSNCSKLKEIRPNVISNLTRLEELYMGNSFTQWKVEGQSNASLGELKQLSRLTTLEVH 389 (937)
Q Consensus 310 ~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~ 389 (937)
++|.++.+| ++++++|++|++++| .+..++ ++.+++|++|++++|... + . + .+..+++|+.|+++
T Consensus 114 ~~N~l~~l~--~~~l~~L~~L~l~~N-~l~~l~---l~~l~~L~~L~l~~n~~~----~---~-~-~~~~l~~L~~L~ls 178 (457)
T 3bz5_A 114 DTNKLTKLD--VSQNPLLTYLNCARN-TLTEID---VSHNTQLTELDCHLNKKI----T---K-L-DVTPQTQLTTLDCS 178 (457)
T ss_dssp CSSCCSCCC--CTTCTTCCEEECTTS-CCSCCC---CTTCTTCCEEECTTCSCC----C---C-C-CCTTCTTCCEEECC
T ss_pred CCCcCCeec--CCCCCcCCEEECCCC-ccceec---cccCCcCCEEECCCCCcc----c---c-c-ccccCCcCCEEECC
Confidence 999999886 899999999999985 477764 788999999999988432 1 1 1 46778899999999
Q ss_pred cCCCCCCCccccccccceeEEEecCcCCCCCCcCCcceEEEecccccchhhhHHHHhhcccccccccccChhhhhhcccc
Q 002313 390 IPDAQVMPQDLVFVELERFRICIGDVWSWSDGYETSKTLKLQLNNSTYLGYGMKMLLKRTEDLHLDELAGFKNVVHELDD 469 (937)
Q Consensus 390 ~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~ 469 (937)
++.+..++ ....++|+.+ ++.++.... . .+
T Consensus 179 ~n~l~~l~-l~~l~~L~~L--------------------------------------------~l~~N~l~~-~--~l-- 208 (457)
T 3bz5_A 179 FNKITELD-VSQNKLLNRL--------------------------------------------NCDTNNITK-L--DL-- 208 (457)
T ss_dssp SSCCCCCC-CTTCTTCCEE--------------------------------------------ECCSSCCSC-C--CC--
T ss_pred CCccceec-cccCCCCCEE--------------------------------------------ECcCCcCCe-e--cc--
Confidence 88766544 1122333333 332221110 0 12
Q ss_pred hhhcccCcEEEeecCCceEEEEccCCccccccccceecccccccccccccccccCCCCCccCCCccEEEEecCCCccccc
Q 002313 470 EEGFARLRHLHVHNGPEILHILNSDGRVGTFPLLESLFLHNLINLEKVCDGKVRLNEDDKSFSNLRIIKVEGCHRVKHLF 549 (937)
Q Consensus 470 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~l~~~~~~~~~~~~~~~~l~~L~~L~l~~C~~L~~l~ 549 (937)
..+++|++|+++++.- ..+ + ...+++|+.|+++++ .++.+ + .+.+++|+.|.+.+
T Consensus 209 -~~l~~L~~L~Ls~N~l-~~i---p--~~~l~~L~~L~l~~N-~l~~~-----~----~~~l~~L~~L~l~~-------- 263 (457)
T 3bz5_A 209 -NQNIQLTFLDCSSNKL-TEI---D--VTPLTQLTYFDCSVN-PLTEL-----D----VSTLSKLTTLHCIQ-------- 263 (457)
T ss_dssp -TTCTTCSEEECCSSCC-SCC---C--CTTCTTCSEEECCSS-CCSCC-----C----CTTCTTCCEEECTT--------
T ss_pred -ccCCCCCEEECcCCcc-ccc---C--ccccCCCCEEEeeCC-cCCCc-----C----HHHCCCCCEEeccC--------
Confidence 2256666666665532 212 1 244556666666554 23222 1 23445555554432
Q ss_pred chhHHHhhccccEEEEcccccchhhhccccccccccCCccccccccccceeeccCCCCccccccCCCCCcccCCCCCCcc
Q 002313 550 PFSLVKNLLQLQKVKVTDCTNLKLIVGKESENSAHKNGSISGVYFRKLHFLKLQHLPQLTSSGFDLETPTNTQGSNPGII 629 (937)
Q Consensus 550 ~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~i~~~~~~~L~~L~l~~c~~L~~~~~~~~~~~~~~~~~~~~~ 629 (937)
.+|+.|++++|..+..++ ...+++|+.|++++|+.+..++... +...
T Consensus 264 --------n~L~~L~l~~n~~~~~~~---------------~~~l~~L~~L~Ls~n~~l~~l~~~~--~~L~-------- 310 (457)
T 3bz5_A 264 --------TDLLEIDLTHNTQLIYFQ---------------AEGCRKIKELDVTHNTQLYLLDCQA--AGIT-------- 310 (457)
T ss_dssp --------CCCSCCCCTTCTTCCEEE---------------CTTCTTCCCCCCTTCTTCCEEECTT--CCCS--------
T ss_pred --------CCCCEEECCCCccCCccc---------------ccccccCCEEECCCCcccceeccCC--Ccce--------
Confidence 134445555554433332 1256777777777777666655321 0000
Q ss_pred ccCCCCCccccccccccCCCcceeeccCcccceeccCCcccccccCCCccEEEEecc
Q 002313 630 AEGDPKDFTSLFNERVVFPSLKKLKLSSINVEKIWLNSFSAIESWGKNLTKLTVEKC 686 (937)
Q Consensus 630 ~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~l~~~~~~~~~~~~~~l~~L~~L~i~~c 686 (937)
.+. ....++|+.|++++|+++.++ ...+++|+.|+++++
T Consensus 311 ----------~L~-l~~~~~L~~L~L~~N~l~~l~-------l~~l~~L~~L~l~~N 349 (457)
T 3bz5_A 311 ----------ELD-LSQNPKLVYLYLNNTELTELD-------VSHNTKLKSLSCVNA 349 (457)
T ss_dssp ----------CCC-CTTCTTCCEEECTTCCCSCCC-------CTTCTTCSEEECCSS
T ss_pred ----------Eec-hhhcccCCEEECCCCcccccc-------cccCCcCcEEECCCC
Confidence 000 123578888888888877764 346788888888886
No 39
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.87 E-value=6.5e-21 Score=211.22 Aligned_cols=302 Identities=16% Similarity=0.153 Sum_probs=227.5
Q ss_pred ccCCCcEEEccCCCCccCCccc--CCCccceeeecCCcccccCChhhhcCCCCccEEEecCCcCccc-CccccCCCCCCE
Q 002313 208 IDEAPTAISIPFRGIYELPERL--GFLKLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHSL-PSSLGCLINLRT 284 (937)
Q Consensus 208 ~~~~l~~l~l~~~~~~~l~~~~--~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~l-p~~i~~l~~Lr~ 284 (937)
...+++.+++.++.+..+|... .+++|++|++.+|... .++...|..+++|++|++++|.+..+ |..|+++++|++
T Consensus 43 ~l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 121 (390)
T 3o6n_A 43 TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIE-EIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTV 121 (390)
T ss_dssp GGCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCC-EECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred ccCCceEEEecCCchhhCChhHhcccccCcEEECCCCccc-ccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCE
Confidence 3678999999999999999875 6899999999998764 45555579999999999999999988 556899999999
Q ss_pred EEccCCcccCc-c-cccCCCCCcEEecccCcCcccCc-ccccCccCCEEEecCCCCCcccChhhhcCCCCCcEEEcCCCc
Q 002313 285 LSLENCLVVDV-A-IIGDLKKLEILSLKHSSIEQLPR-EIGQLTCLKLLDLSNCSKLKEIRPNVISNLTRLEELYMGNSF 361 (937)
Q Consensus 285 L~L~~~~~~~l-~-~i~~L~~L~~L~L~~~~l~~lp~-~i~~L~~L~~L~l~~~~~l~~lp~~~l~~L~~L~~L~l~~~~ 361 (937)
|++++|.+..+ . .++++++|++|++++|.+..+++ .++++++|++|++++| .+..++ ++.+++|++|++++|.
T Consensus 122 L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~---~~~l~~L~~L~l~~n~ 197 (390)
T 3o6n_A 122 LVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSN-RLTHVD---LSLIPSLFHANVSYNL 197 (390)
T ss_dssp EECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSS-CCSBCC---GGGCTTCSEEECCSSC
T ss_pred EECCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCC-cCCccc---cccccccceeeccccc
Confidence 99999999987 3 36999999999999999998864 5899999999999995 477664 5788999999999885
Q ss_pred ccceecCCCCCChhhhcCCCCCCeEEeecCCCCCCCccccccccceeEEEecCcCCCCCCcCCcceEEEecccccchhhh
Q 002313 362 TQWKVEGQSNASLGELKQLSRLTTLEVHIPDAQVMPQDLVFVELERFRICIGDVWSWSDGYETSKTLKLQLNNSTYLGYG 441 (937)
Q Consensus 362 ~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~ 441 (937)
+. .+....+|+.|+++++.+..++... ..
T Consensus 198 l~------------~~~~~~~L~~L~l~~n~l~~~~~~~-~~-------------------------------------- 226 (390)
T 3o6n_A 198 LS------------TLAIPIAVEELDASHNSINVVRGPV-NV-------------------------------------- 226 (390)
T ss_dssp CS------------EEECCSSCSEEECCSSCCCEEECCC-CS--------------------------------------
T ss_pred cc------------ccCCCCcceEEECCCCeeeeccccc-cc--------------------------------------
Confidence 53 3344568999999988765543321 12
Q ss_pred HHHHhhcccccccccccChhhhhhcccchhhcccCcEEEeecCCceEEEEccCCccccccccceeccccccccccccccc
Q 002313 442 MKMLLKRTEDLHLDELAGFKNVVHELDDEEGFARLRHLHVHNGPEILHILNSDGRVGTFPLLESLFLHNLINLEKVCDGK 521 (937)
Q Consensus 442 ~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~l~~~~~~~ 521 (937)
+|+.|++.++.... .+.+ ..+++|++|+++++.-.... +.....+++|++|+++++ .++.+..
T Consensus 227 ------~L~~L~l~~n~l~~--~~~l---~~l~~L~~L~Ls~n~l~~~~---~~~~~~l~~L~~L~L~~n-~l~~~~~-- 289 (390)
T 3o6n_A 227 ------ELTILKLQHNNLTD--TAWL---LNYPGLVEVDLSYNELEKIM---YHPFVKMQRLERLYISNN-RLVALNL-- 289 (390)
T ss_dssp ------SCCEEECCSSCCCC--CGGG---GGCTTCSEEECCSSCCCEEE---SGGGTTCSSCCEEECCSS-CCCEEEC--
T ss_pred ------cccEEECCCCCCcc--cHHH---cCCCCccEEECCCCcCCCcC---hhHccccccCCEEECCCC-cCcccCc--
Confidence 33444444432211 1233 33888999999887433322 223356788999999885 4544321
Q ss_pred ccCCCCCccCCCccEEEEecCCCcccccchhHHHhhccccEEEEcccccchhhhccccccccccCCccccccccccceee
Q 002313 522 VRLNEDDKSFSNLRIIKVEGCHRVKHLFPFSLVKNLLQLQKVKVTDCTNLKLIVGKESENSAHKNGSISGVYFRKLHFLK 601 (937)
Q Consensus 522 ~~~~~~~~~l~~L~~L~l~~C~~L~~l~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~i~~~~~~~L~~L~ 601 (937)
....+++|++|++++| +++.+|+ .+..+++|++|+++++. ++.+. ...+++|++|+
T Consensus 290 -----~~~~l~~L~~L~L~~n-~l~~~~~--~~~~l~~L~~L~L~~N~-i~~~~---------------~~~~~~L~~L~ 345 (390)
T 3o6n_A 290 -----YGQPIPTLKVLDLSHN-HLLHVER--NQPQFDRLENLYLDHNS-IVTLK---------------LSTHHTLKNLT 345 (390)
T ss_dssp -----SSSCCTTCCEEECCSS-CCCCCGG--GHHHHTTCSEEECCSSC-CCCCC---------------CCTTCCCSEEE
T ss_pred -----ccCCCCCCCEEECCCC-cceecCc--cccccCcCCEEECCCCc-cceeC---------------chhhccCCEEE
Confidence 1346889999999996 5777764 35688999999999875 33332 13788999999
Q ss_pred ccCCC
Q 002313 602 LQHLP 606 (937)
Q Consensus 602 l~~c~ 606 (937)
+.+++
T Consensus 346 l~~N~ 350 (390)
T 3o6n_A 346 LSHND 350 (390)
T ss_dssp CCSSC
T ss_pred cCCCC
Confidence 98875
No 40
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.87 E-value=4.1e-21 Score=219.20 Aligned_cols=304 Identities=20% Similarity=0.228 Sum_probs=218.3
Q ss_pred cCcchhhhhhccCCCcEEEccCCCCccCCc-cc-CCCccceeeecCCcccccCChhhhcCCCCccEEEecCCcCcccCc-
Q 002313 198 VADLKEELDKIDEAPTAISIPFRGIYELPE-RL-GFLKLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHSLPS- 274 (937)
Q Consensus 198 ~~~~~~~~~~~~~~l~~l~l~~~~~~~l~~-~~-~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~lp~- 274 (937)
+..+..+|...+..++.|++++|.+..++. .+ .+++|++|++.+|.+....| ..|.++++|++|+|++|.+..+|.
T Consensus 20 ~~~l~~ip~~~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~ 98 (477)
T 2id5_A 20 RKRFVAVPEGIPTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEP-GAFNNLFNLRTLGLRSNRLKLIPLG 98 (477)
T ss_dssp SCCCSSCCSCCCTTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECT-TTTTTCTTCCEEECCSSCCCSCCTT
T ss_pred CCCcCcCCCCCCCCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeCh-hhhhCCccCCEEECCCCcCCccCcc
Confidence 445667777778899999999999998864 34 79999999999997665445 447999999999999999999976
Q ss_pred cccCCCCCCEEEccCCcccCc--ccccCCCCCcEEecccCcCcccC-cccccCccCCEEEecCCCCCcccChhhhcCCCC
Q 002313 275 SLGCLINLRTLSLENCLVVDV--AIIGDLKKLEILSLKHSSIEQLP-REIGQLTCLKLLDLSNCSKLKEIRPNVISNLTR 351 (937)
Q Consensus 275 ~i~~l~~Lr~L~L~~~~~~~l--~~i~~L~~L~~L~L~~~~l~~lp-~~i~~L~~L~~L~l~~~~~l~~lp~~~l~~L~~ 351 (937)
.|.++++|++|++++|.+..+ ..+.++++|++|++++|.+..++ ..++.+++|++|++++| .+..++...++++++
T Consensus 99 ~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~l~~l~~ 177 (477)
T 2id5_A 99 VFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKC-NLTSIPTEALSHLHG 177 (477)
T ss_dssp SSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESC-CCSSCCHHHHTTCTT
T ss_pred cccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCC-cCcccChhHhcccCC
Confidence 478999999999999998865 67999999999999999998775 57999999999999996 588898887999999
Q ss_pred CcEEEcCCCcccceecCCCCCChhhhcCCCCCCeEEeecCCC-CCCCccc-cccccceeEEEecCcCCCCCCcCCcceEE
Q 002313 352 LEELYMGNSFTQWKVEGQSNASLGELKQLSRLTTLEVHIPDA-QVMPQDL-VFVELERFRICIGDVWSWSDGYETSKTLK 429 (937)
Q Consensus 352 L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~-~~~~~~~-~~~~L~~l~l~~~~~~~~~~~~~~~~~l~ 429 (937)
|+.|++++|.+. ......+..+++|+.|+++++.. ..++... ...+|+
T Consensus 178 L~~L~l~~n~i~-------~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~----------------------- 227 (477)
T 2id5_A 178 LIVLRLRHLNIN-------AIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLT----------------------- 227 (477)
T ss_dssp CCEEEEESCCCC-------EECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCS-----------------------
T ss_pred CcEEeCCCCcCc-------EeChhhcccCcccceeeCCCCccccccCcccccCcccc-----------------------
Confidence 999999998664 22335677888999999988643 2222211 112333
Q ss_pred EecccccchhhhHHHHhhcccccccccccChhhhhhcccchhhcccCcEEEeecCCceEEEEccCCccccccccceeccc
Q 002313 430 LQLNNSTYLGYGMKMLLKRTEDLHLDELAGFKNVVHELDDEEGFARLRHLHVHNGPEILHILNSDGRVGTFPLLESLFLH 509 (937)
Q Consensus 430 l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~p~L~~L~l~ 509 (937)
+|+++++.........+. .+++|++|+++++. +..+. ......+++|++|.++
T Consensus 228 ---------------------~L~l~~n~l~~~~~~~~~---~l~~L~~L~Ls~n~-l~~~~--~~~~~~l~~L~~L~L~ 280 (477)
T 2id5_A 228 ---------------------SLSITHCNLTAVPYLAVR---HLVYLRFLNLSYNP-ISTIE--GSMLHELLRLQEIQLV 280 (477)
T ss_dssp ---------------------EEEEESSCCCSCCHHHHT---TCTTCCEEECCSSC-CCEEC--TTSCTTCTTCCEEECC
T ss_pred ---------------------EEECcCCcccccCHHHhc---CccccCeeECCCCc-CCccC--hhhccccccCCEEECC
Confidence 333333221111111222 37788888888764 33332 1222566777777777
Q ss_pred ccccccccccccccCCCCCccCCCccEEEEecCCCcccccchhHHHhhccccEEEEcccc
Q 002313 510 NLINLEKVCDGKVRLNEDDKSFSNLRIIKVEGCHRVKHLFPFSLVKNLLQLQKVKVTDCT 569 (937)
Q Consensus 510 ~~~~l~~~~~~~~~~~~~~~~l~~L~~L~l~~C~~L~~l~~~~~~~~l~~L~~L~i~~c~ 569 (937)
++ .++.+... ....+++|+.|+++++ +++.+++ ..+..+++|++|++.+++
T Consensus 281 ~n-~l~~~~~~------~~~~l~~L~~L~L~~N-~l~~~~~-~~~~~l~~L~~L~l~~N~ 331 (477)
T 2id5_A 281 GG-QLAVVEPY------AFRGLNYLRVLNVSGN-QLTTLEE-SVFHSVGNLETLILDSNP 331 (477)
T ss_dssp SS-CCSEECTT------TBTTCTTCCEEECCSS-CCSCCCG-GGBSCGGGCCEEECCSSC
T ss_pred CC-ccceECHH------HhcCcccCCEEECCCC-cCceeCH-hHcCCCcccCEEEccCCC
Confidence 74 34433221 1346677888888774 5666654 345567777777777654
No 41
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.85 E-value=2.2e-20 Score=218.63 Aligned_cols=302 Identities=16% Similarity=0.142 Sum_probs=228.2
Q ss_pred ccCCCcEEEccCCCCccCCccc--CCCccceeeecCCcccccCChhhhcCCCCccEEEecCCcCcccC-ccccCCCCCCE
Q 002313 208 IDEAPTAISIPFRGIYELPERL--GFLKLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHSLP-SSLGCLINLRT 284 (937)
Q Consensus 208 ~~~~l~~l~l~~~~~~~l~~~~--~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~lp-~~i~~l~~Lr~ 284 (937)
.+.+++.+++.++.+..+|... .+++|++|++.+|.+.. ++...|+.+++|++|+|++|.+..+| ..|+++++|++
T Consensus 49 ~l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 127 (597)
T 3oja_B 49 TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEE-IDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTV 127 (597)
T ss_dssp GGCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCE-ECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred cCCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCC-CChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCE
Confidence 3578999999999999999875 68999999999998654 45445799999999999999999885 45799999999
Q ss_pred EEccCCcccCc-c-cccCCCCCcEEecccCcCcccCc-ccccCccCCEEEecCCCCCcccChhhhcCCCCCcEEEcCCCc
Q 002313 285 LSLENCLVVDV-A-IIGDLKKLEILSLKHSSIEQLPR-EIGQLTCLKLLDLSNCSKLKEIRPNVISNLTRLEELYMGNSF 361 (937)
Q Consensus 285 L~L~~~~~~~l-~-~i~~L~~L~~L~L~~~~l~~lp~-~i~~L~~L~~L~l~~~~~l~~lp~~~l~~L~~L~~L~l~~~~ 361 (937)
|++++|.+..+ + .++++++|++|++++|.+..+|+ .++++++|++|++++| .+..++ ++.+++|++|++++|.
T Consensus 128 L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~---~~~l~~L~~L~l~~n~ 203 (597)
T 3oja_B 128 LVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSN-RLTHVD---LSLIPSLFHANVSYNL 203 (597)
T ss_dssp EECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTS-CCSBCC---GGGCTTCSEEECCSSC
T ss_pred EEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCC-CCCCcC---hhhhhhhhhhhcccCc
Confidence 99999999887 3 47999999999999999998765 6999999999999995 477775 5778999999999886
Q ss_pred ccceecCCCCCChhhhcCCCCCCeEEeecCCCCCCCccccccccceeEEEecCcCCCCCCcCCcceEEEecccccchhhh
Q 002313 362 TQWKVEGQSNASLGELKQLSRLTTLEVHIPDAQVMPQDLVFVELERFRICIGDVWSWSDGYETSKTLKLQLNNSTYLGYG 441 (937)
Q Consensus 362 ~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~ 441 (937)
+. .+....+|+.|+++++.+..++... .
T Consensus 204 l~------------~l~~~~~L~~L~ls~n~l~~~~~~~-~--------------------------------------- 231 (597)
T 3oja_B 204 LS------------TLAIPIAVEELDASHNSINVVRGPV-N--------------------------------------- 231 (597)
T ss_dssp CS------------EEECCTTCSEEECCSSCCCEEECSC-C---------------------------------------
T ss_pred cc------------cccCCchhheeeccCCccccccccc-C---------------------------------------
Confidence 53 3445568999999988765543321 1
Q ss_pred HHHHhhcccccccccccChhhhhhcccchhhcccCcEEEeecCCceEEEEccCCccccccccceeccccccccccccccc
Q 002313 442 MKMLLKRTEDLHLDELAGFKNVVHELDDEEGFARLRHLHVHNGPEILHILNSDGRVGTFPLLESLFLHNLINLEKVCDGK 521 (937)
Q Consensus 442 ~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~l~~~~~~~ 521 (937)
++|+.|+++++.... ...+. .+++|++|+++++.-.... +.....+++|+.|+++++ .+..+.
T Consensus 232 -----~~L~~L~L~~n~l~~--~~~l~---~l~~L~~L~Ls~N~l~~~~---~~~~~~l~~L~~L~Ls~N-~l~~l~--- 294 (597)
T 3oja_B 232 -----VELTILKLQHNNLTD--TAWLL---NYPGLVEVDLSYNELEKIM---YHPFVKMQRLERLYISNN-RLVALN--- 294 (597)
T ss_dssp -----SCCCEEECCSSCCCC--CGGGG---GCTTCSEEECCSSCCCEEE---SGGGTTCSSCCEEECTTS-CCCEEE---
T ss_pred -----CCCCEEECCCCCCCC--Chhhc---cCCCCCEEECCCCccCCCC---HHHhcCccCCCEEECCCC-CCCCCC---
Confidence 234444444432211 12333 3889999999887543332 223367888999999885 454432
Q ss_pred ccCCCCCccCCCccEEEEecCCCcccccchhHHHhhccccEEEEcccccchhhhccccccccccCCccccccccccceee
Q 002313 522 VRLNEDDKSFSNLRIIKVEGCHRVKHLFPFSLVKNLLQLQKVKVTDCTNLKLIVGKESENSAHKNGSISGVYFRKLHFLK 601 (937)
Q Consensus 522 ~~~~~~~~~l~~L~~L~l~~C~~L~~l~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~i~~~~~~~L~~L~ 601 (937)
.....+++|+.|++++| .++.+|+ .+..+++|++|++++|. +..++ ...+++|+.|+
T Consensus 295 ----~~~~~l~~L~~L~Ls~N-~l~~i~~--~~~~l~~L~~L~L~~N~-l~~~~---------------~~~~~~L~~L~ 351 (597)
T 3oja_B 295 ----LYGQPIPTLKVLDLSHN-HLLHVER--NQPQFDRLENLYLDHNS-IVTLK---------------LSTHHTLKNLT 351 (597)
T ss_dssp ----CSSSCCTTCCEEECCSS-CCCCCGG--GHHHHTTCSEEECCSSC-CCCCC---------------CCTTCCCSEEE
T ss_pred ----cccccCCCCcEEECCCC-CCCccCc--ccccCCCCCEEECCCCC-CCCcC---------------hhhcCCCCEEE
Confidence 12356899999999985 5677764 45789999999999976 33222 13788999999
Q ss_pred ccCCC
Q 002313 602 LQHLP 606 (937)
Q Consensus 602 l~~c~ 606 (937)
+.+++
T Consensus 352 l~~N~ 356 (597)
T 3oja_B 352 LSHND 356 (597)
T ss_dssp CCSSC
T ss_pred eeCCC
Confidence 99876
No 42
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.83 E-value=8.3e-20 Score=196.07 Aligned_cols=221 Identities=18% Similarity=0.299 Sum_probs=138.8
Q ss_pred CCCccEEEecCCcCcccCccccCCCCCCEEEccCCcccCc-ccccCCCCCcEEecccCcCcccCcccccCccCCEEEecC
Q 002313 256 MTELRVLDLTGFRFHSLPSSLGCLINLRTLSLENCLVVDV-AIIGDLKKLEILSLKHSSIEQLPREIGQLTCLKLLDLSN 334 (937)
Q Consensus 256 l~~Lr~L~L~~~~~~~lp~~i~~l~~Lr~L~L~~~~~~~l-~~i~~L~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~l~~ 334 (937)
..++++|++++|.+..+|..++++++|++|++++|.+..+ ..++++++|++|++++|.++.+|..++++++|++|++++
T Consensus 80 ~~~l~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~ 159 (328)
T 4fcg_A 80 QPGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARNPLRALPASIASLNRLRELSIRA 159 (328)
T ss_dssp STTCCEEEEESSCCSSCCSCGGGGTTCSEEEEESSCCCCCCSCGGGGTTCSEEEEESCCCCCCCGGGGGCTTCCEEEEEE
T ss_pred ccceeEEEccCCCchhcChhhhhCCCCCEEECCCCCccchhHHHhccCCCCEEECCCCccccCcHHHhcCcCCCEEECCC
Confidence 4667777777777777777777777777777777777655 557777777777777777777777777777777777777
Q ss_pred CCCCcccChhhhc---------CCCCCcEEEcCCCcccceecCCCCCChhhhcCCCCCCeEEeecCCCCCCCcccccccc
Q 002313 335 CSKLKEIRPNVIS---------NLTRLEELYMGNSFTQWKVEGQSNASLGELKQLSRLTTLEVHIPDAQVMPQDLVFVEL 405 (937)
Q Consensus 335 ~~~l~~lp~~~l~---------~L~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L 405 (937)
|+....+|.. ++ .+++|++|++++|.+. ..+..+..+++|+.|+++++.+..++.
T Consensus 160 n~~~~~~p~~-~~~~~~~~~~~~l~~L~~L~L~~n~l~--------~lp~~l~~l~~L~~L~L~~N~l~~l~~------- 223 (328)
T 4fcg_A 160 CPELTELPEP-LASTDASGEHQGLVNLQSLRLEWTGIR--------SLPASIANLQNLKSLKIRNSPLSALGP------- 223 (328)
T ss_dssp ETTCCCCCSC-SEEEC-CCCEEESTTCCEEEEEEECCC--------CCCGGGGGCTTCCEEEEESSCCCCCCG-------
T ss_pred CCCccccChh-HhhccchhhhccCCCCCEEECcCCCcC--------cchHhhcCCCCCCEEEccCCCCCcCch-------
Confidence 7767777665 33 3666666666665442 223445556666666666654432221
Q ss_pred ceeEEEecCcCCCCCCcCCcceEEEecccccchhhhHHHHhhcccccccccccChhhhhhcccchhhcccCcEEEeecCC
Q 002313 406 ERFRICIGDVWSWSDGYETSKTLKLQLNNSTYLGYGMKMLLKRTEDLHLDELAGFKNVVHELDDEEGFARLRHLHVHNGP 485 (937)
Q Consensus 406 ~~l~l~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~~~L~~L~l~~~~ 485 (937)
.+. .+++|++|++++|.
T Consensus 224 ------------------------------------------------------------~l~---~l~~L~~L~Ls~n~ 240 (328)
T 4fcg_A 224 ------------------------------------------------------------AIH---HLPKLEELDLRGCT 240 (328)
T ss_dssp ------------------------------------------------------------GGG---GCTTCCEEECTTCT
T ss_pred ------------------------------------------------------------hhc---cCCCCCEEECcCCc
Confidence 111 25566666666654
Q ss_pred ceEEEEccCCccccccccceecccccccccccccccccCCCCCccCCCccEEEEecCCCcccccchhHHHhhccccEEEE
Q 002313 486 EILHILNSDGRVGTFPLLESLFLHNLINLEKVCDGKVRLNEDDKSFSNLRIIKVEGCHRVKHLFPFSLVKNLLQLQKVKV 565 (937)
Q Consensus 486 ~~~~~~~~~~~~~~~p~L~~L~l~~~~~l~~~~~~~~~~~~~~~~l~~L~~L~l~~C~~L~~l~~~~~~~~l~~L~~L~i 565 (937)
....+ +.....+++|++|++++|+....+. .....+++|++|+|++|+.+..+|. .+..+++|+.+.+
T Consensus 241 ~~~~~---p~~~~~l~~L~~L~L~~n~~~~~~p-------~~~~~l~~L~~L~L~~n~~~~~iP~--~l~~L~~L~~l~l 308 (328)
T 4fcg_A 241 ALRNY---PPIFGGRAPLKRLILKDCSNLLTLP-------LDIHRLTQLEKLDLRGCVNLSRLPS--LIAQLPANCIILV 308 (328)
T ss_dssp TCCBC---CCCTTCCCCCCEEECTTCTTCCBCC-------TTGGGCTTCCEEECTTCTTCCCCCG--GGGGSCTTCEEEC
T ss_pred chhhh---HHHhcCCCCCCEEECCCCCchhhcc-------hhhhcCCCCCEEeCCCCCchhhccH--HHhhccCceEEeC
Confidence 44332 1222445566666666654443321 1234677788888888777777763 4566777777766
Q ss_pred cc
Q 002313 566 TD 567 (937)
Q Consensus 566 ~~ 567 (937)
..
T Consensus 309 ~~ 310 (328)
T 4fcg_A 309 PP 310 (328)
T ss_dssp CG
T ss_pred CH
Confidence 53
No 43
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.82 E-value=4.6e-21 Score=225.62 Aligned_cols=125 Identities=19% Similarity=0.191 Sum_probs=57.5
Q ss_pred CCccceeeecCCcccccCChhhhcC-CC-CccEEEecCCc-Cc--ccCccccCCCCCCEEEccCCcccCc------cccc
Q 002313 231 FLKLKLFLFFTENLSLQIPDPFFEG-MT-ELRVLDLTGFR-FH--SLPSSLGCLINLRTLSLENCLVVDV------AIIG 299 (937)
Q Consensus 231 ~~~L~~L~l~~~~~~~~~~~~~~~~-l~-~Lr~L~L~~~~-~~--~lp~~i~~l~~Lr~L~L~~~~~~~l------~~i~ 299 (937)
+++|++|++.++......+..+ .. ++ +|++|++++|. +. .++..+.++++|++|++++|.+... ..+.
T Consensus 111 ~~~L~~L~L~~~~i~~~~~~~l-~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~ 189 (592)
T 3ogk_B 111 LRQLKSVHFRRMIVSDLDLDRL-AKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQ 189 (592)
T ss_dssp CTTCCEEEEESCBCCHHHHHHH-HHHHGGGCCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHH
T ss_pred CCCCCeEEeeccEecHHHHHHH-HHhccccCcEEECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHh
Confidence 4555555555554322222221 22 22 25555555554 11 1222233455555555555554321 1233
Q ss_pred CCCCCcEEecccCcCc-----ccCcccccCccCCEEEecCCCCCcccChhhhcCCCCCcEEEcC
Q 002313 300 DLKKLEILSLKHSSIE-----QLPREIGQLTCLKLLDLSNCSKLKEIRPNVISNLTRLEELYMG 358 (937)
Q Consensus 300 ~L~~L~~L~L~~~~l~-----~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~l~~L~~L~~L~l~ 358 (937)
.+++|++|+++++.+. .++..+.++++|++|++++|. +..++.. ++++++|++|+++
T Consensus 190 ~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~-~~~l~~~-~~~~~~L~~L~l~ 251 (592)
T 3ogk_B 190 HNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFE-ILELVGF-FKAAANLEEFCGG 251 (592)
T ss_dssp HCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCB-GGGGHHH-HHHCTTCCEEEEC
T ss_pred cCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCcc-HHHHHHH-HhhhhHHHhhccc
Confidence 4555555555555443 233334455555555555533 3444432 5555555555554
No 44
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.82 E-value=1.1e-18 Score=188.35 Aligned_cols=150 Identities=20% Similarity=0.336 Sum_probs=100.8
Q ss_pred ccceeeecCCcccccCChhhhcCCCCccEEEecCCcCcccCc-cccCCCCCCEEEccCCcccCc--ccccCCCCCcEEec
Q 002313 233 KLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHSLPS-SLGCLINLRTLSLENCLVVDV--AIIGDLKKLEILSL 309 (937)
Q Consensus 233 ~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~lp~-~i~~l~~Lr~L~L~~~~~~~l--~~i~~L~~L~~L~L 309 (937)
+++++++.++.. ..+|..+ .++|++|++++|.+..+|. .|+++++|++|++++|.+..+ ..++++++|++|++
T Consensus 32 ~l~~l~~~~~~l-~~lp~~~---~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 107 (330)
T 1xku_A 32 HLRVVQCSDLGL-EKVPKDL---PPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYL 107 (330)
T ss_dssp ETTEEECTTSCC-CSCCCSC---CTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEEC
T ss_pred CCeEEEecCCCc-cccCccC---CCCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEEC
Confidence 566666655543 3455443 3567778888877777754 577778888888887777655 56777788888888
Q ss_pred ccCcCcccCcccccCccCCEEEecCCCCCcccChhhhcCCCCCcEEEcCCCcccceecCCCCCChhhhcCCCCCCeEEee
Q 002313 310 KHSSIEQLPREIGQLTCLKLLDLSNCSKLKEIRPNVISNLTRLEELYMGNSFTQWKVEGQSNASLGELKQLSRLTTLEVH 389 (937)
Q Consensus 310 ~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~ 389 (937)
++|.++.+|..+. ++|++|++++| .+..++...++++++|++|++++|.+. ........+..+++|+.|+++
T Consensus 108 s~n~l~~l~~~~~--~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~-----~~~~~~~~~~~l~~L~~L~l~ 179 (330)
T 1xku_A 108 SKNQLKELPEKMP--KTLQELRVHEN-EITKVRKSVFNGLNQMIVVELGTNPLK-----SSGIENGAFQGMKKLSYIRIA 179 (330)
T ss_dssp CSSCCSBCCSSCC--TTCCEEECCSS-CCCBBCHHHHTTCTTCCEEECCSSCCC-----GGGBCTTGGGGCTTCCEEECC
T ss_pred CCCcCCccChhhc--ccccEEECCCC-cccccCHhHhcCCccccEEECCCCcCC-----ccCcChhhccCCCCcCEEECC
Confidence 8887777776655 67888888774 466777666777888888888777543 011233455666667777776
Q ss_pred cCCCC
Q 002313 390 IPDAQ 394 (937)
Q Consensus 390 ~~~~~ 394 (937)
++.+.
T Consensus 180 ~n~l~ 184 (330)
T 1xku_A 180 DTNIT 184 (330)
T ss_dssp SSCCC
T ss_pred CCccc
Confidence 65543
No 45
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.81 E-value=1.3e-19 Score=193.32 Aligned_cols=245 Identities=16% Similarity=0.178 Sum_probs=177.9
Q ss_pred CCCcEEEccCCCCc---cCCccc-CCCccceeeecC-CcccccCChhhhcCCCCccEEEecCCcCc-ccCccccCCCCCC
Q 002313 210 EAPTAISIPFRGIY---ELPERL-GFLKLKLFLFFT-ENLSLQIPDPFFEGMTELRVLDLTGFRFH-SLPSSLGCLINLR 283 (937)
Q Consensus 210 ~~l~~l~l~~~~~~---~l~~~~-~~~~L~~L~l~~-~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~-~lp~~i~~l~~Lr 283 (937)
.++++++++++.+. .+|..+ .+++|++|++.+ |.....+|.. |.++++|++|++++|.+. .+|..|+++++|+
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~-l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~ 128 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPA-IAKLTQLHYLYITHTNVSGAIPDFLSQIKTLV 128 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGG-GGGCTTCSEEEEEEECCEEECCGGGGGCTTCC
T ss_pred ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChh-HhcCCCCCEEECcCCeeCCcCCHHHhCCCCCC
Confidence 57888999998887 467766 688999999985 7777777766 588999999999999987 6788899999999
Q ss_pred EEEccCCccc-Cc-ccccCCCCCcEEecccCcCc-ccCcccccCc-cCCEEEecCCCCCcccChhhhcCCCCCcEEEcCC
Q 002313 284 TLSLENCLVV-DV-AIIGDLKKLEILSLKHSSIE-QLPREIGQLT-CLKLLDLSNCSKLKEIRPNVISNLTRLEELYMGN 359 (937)
Q Consensus 284 ~L~L~~~~~~-~l-~~i~~L~~L~~L~L~~~~l~-~lp~~i~~L~-~L~~L~l~~~~~l~~lp~~~l~~L~~L~~L~l~~ 359 (937)
+|++++|.+. .+ ..++++++|++|++++|.++ .+|..++++. +|++|++++|.-...+|.. ++.++ |++|++++
T Consensus 129 ~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~-~~~l~-L~~L~Ls~ 206 (313)
T 1ogq_A 129 TLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPT-FANLN-LAFVDLSR 206 (313)
T ss_dssp EEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGG-GGGCC-CSEEECCS
T ss_pred EEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChH-HhCCc-ccEEECcC
Confidence 9999999887 33 67889999999999999887 7888898888 8999999986533355554 78887 99999988
Q ss_pred CcccceecCCCCCChhhhcCCCCCCeEEeecCCCCCCCccccccccceeEEEecCcCCCCCCcCCcceEEEecccccchh
Q 002313 360 SFTQWKVEGQSNASLGELKQLSRLTTLEVHIPDAQVMPQDLVFVELERFRICIGDVWSWSDGYETSKTLKLQLNNSTYLG 439 (937)
Q Consensus 360 ~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~l~l~~~~~~~~~ 439 (937)
|.+. ......+..+++|+.|+++++.+...+..+
T Consensus 207 N~l~-------~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~--------------------------------------- 240 (313)
T 1ogq_A 207 NMLE-------GDASVLFGSDKNTQKIHLAKNSLAFDLGKV--------------------------------------- 240 (313)
T ss_dssp SEEE-------ECCGGGCCTTSCCSEEECCSSEECCBGGGC---------------------------------------
T ss_pred Cccc-------CcCCHHHhcCCCCCEEECCCCceeeecCcc---------------------------------------
Confidence 8765 234566778888999998887654322111
Q ss_pred hhHHHHhhcccccccccccChhhhhhcccchhhcccCcEEEeecCCceEEEEccCCccccccccceecccccccc
Q 002313 440 YGMKMLLKRTEDLHLDELAGFKNVVHELDDEEGFARLRHLHVHNGPEILHILNSDGRVGTFPLLESLFLHNLINL 514 (937)
Q Consensus 440 ~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~l 514 (937)
..+++|++|+++++......+..+.. +++|++|+++++.-...++.. ..+++|+.|.+.+++.+
T Consensus 241 ----~~l~~L~~L~Ls~N~l~~~~p~~l~~---l~~L~~L~Ls~N~l~~~ip~~----~~l~~L~~l~l~~N~~l 304 (313)
T 1ogq_A 241 ----GLSKNLNGLDLRNNRIYGTLPQGLTQ---LKFLHSLNVSFNNLCGEIPQG----GNLQRFDVSAYANNKCL 304 (313)
T ss_dssp ----CCCTTCCEEECCSSCCEECCCGGGGG---CTTCCEEECCSSEEEEECCCS----TTGGGSCGGGTCSSSEE
T ss_pred ----cccCCCCEEECcCCcccCcCChHHhc---CcCCCEEECcCCcccccCCCC----ccccccChHHhcCCCCc
Confidence 01244555555554433333344444 778888888877443333221 56777777777776544
No 46
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.81 E-value=3.7e-19 Score=192.19 Aligned_cols=153 Identities=20% Similarity=0.318 Sum_probs=92.7
Q ss_pred ccceeeecCCcccccCChhhhcCCCCccEEEecCCcCccc-CccccCCCCCCEEEccCCcccCc--ccccCCCCCcEEec
Q 002313 233 KLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHSL-PSSLGCLINLRTLSLENCLVVDV--AIIGDLKKLEILSL 309 (937)
Q Consensus 233 ~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~l-p~~i~~l~~Lr~L~L~~~~~~~l--~~i~~L~~L~~L~L 309 (937)
+++.+++.++.. ..+|..+ .++|++|++++|.+..+ |..|+++++|++|++++|.++.+ ..++++++|++|++
T Consensus 34 ~l~~l~~~~~~l-~~ip~~~---~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 109 (332)
T 2ft3_A 34 HLRVVQCSDLGL-KAVPKEI---SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYI 109 (332)
T ss_dssp ETTEEECCSSCC-SSCCSCC---CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEEC
T ss_pred cCCEEECCCCCc-cccCCCC---CCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEEC
Confidence 566666665543 3555543 34666777777766665 34566677777777777766644 45666777777777
Q ss_pred ccCcCcccCcccccCccCCEEEecCCCCCcccChhhhcCCCCCcEEEcCCCcccceecCCCCCChhhhcCCCCCCeEEee
Q 002313 310 KHSSIEQLPREIGQLTCLKLLDLSNCSKLKEIRPNVISNLTRLEELYMGNSFTQWKVEGQSNASLGELKQLSRLTTLEVH 389 (937)
Q Consensus 310 ~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~ 389 (937)
++|.++.+|..+. ++|++|++++| .+..++...++++++|++|++++|.+.. .......+..+ +|+.|+++
T Consensus 110 ~~n~l~~l~~~~~--~~L~~L~l~~n-~i~~~~~~~~~~l~~L~~L~l~~n~l~~-----~~~~~~~~~~l-~L~~L~l~ 180 (332)
T 2ft3_A 110 SKNHLVEIPPNLP--SSLVELRIHDN-RIRKVPKGVFSGLRNMNCIEMGGNPLEN-----SGFEPGAFDGL-KLNYLRIS 180 (332)
T ss_dssp CSSCCCSCCSSCC--TTCCEEECCSS-CCCCCCSGGGSSCSSCCEEECCSCCCBG-----GGSCTTSSCSC-CCSCCBCC
T ss_pred CCCcCCccCcccc--ccCCEEECCCC-ccCccCHhHhCCCccCCEEECCCCcccc-----CCCCcccccCC-ccCEEECc
Confidence 7776666666554 66777777663 3666666556667777777776665420 01223344444 66666666
Q ss_pred cCCCCCCCc
Q 002313 390 IPDAQVMPQ 398 (937)
Q Consensus 390 ~~~~~~~~~ 398 (937)
++.+..+|.
T Consensus 181 ~n~l~~l~~ 189 (332)
T 2ft3_A 181 EAKLTGIPK 189 (332)
T ss_dssp SSBCSSCCS
T ss_pred CCCCCccCc
Confidence 666555544
No 47
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.81 E-value=1.9e-20 Score=220.32 Aligned_cols=36 Identities=8% Similarity=0.068 Sum_probs=19.7
Q ss_pred cCCCccEEEEecCCCcccccchhHHHhhccccEEEEc
Q 002313 530 SFSNLRIIKVEGCHRVKHLFPFSLVKNLLQLQKVKVT 566 (937)
Q Consensus 530 ~l~~L~~L~l~~C~~L~~l~~~~~~~~l~~L~~L~i~ 566 (937)
.+++|++|++++|. ++.......+..+++|++|++.
T Consensus 291 ~~~~L~~L~Ls~~~-l~~~~~~~~~~~~~~L~~L~L~ 326 (592)
T 3ogk_B 291 FAAQIRKLDLLYAL-LETEDHCTLIQKCPNLEVLETR 326 (592)
T ss_dssp GGGGCCEEEETTCC-CCHHHHHHHHTTCTTCCEEEEE
T ss_pred hcCCCcEEecCCCc-CCHHHHHHHHHhCcCCCEEecc
Confidence 45566666666655 4332222334556666666666
No 48
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.80 E-value=4.7e-18 Score=183.46 Aligned_cols=170 Identities=17% Similarity=0.256 Sum_probs=121.5
Q ss_pred CCcEEEccCCCCccCCcccCCCccceeeecCCcccccCChhhhcCCCCccEEEecCCcCccc-CccccCCCCCCEEEccC
Q 002313 211 APTAISIPFRGIYELPERLGFLKLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHSL-PSSLGCLINLRTLSLEN 289 (937)
Q Consensus 211 ~l~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~l-p~~i~~l~~Lr~L~L~~ 289 (937)
.++.++++++.+..+|..+ .+++++|++.+|.+. .++...|+++++|++|++++|.+..+ |..|+++++|++|++++
T Consensus 32 ~l~~l~~~~~~l~~lp~~~-~~~l~~L~L~~n~i~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~ 109 (330)
T 1xku_A 32 HLRVVQCSDLGLEKVPKDL-PPDTALLDLQNNKIT-EIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSK 109 (330)
T ss_dssp ETTEEECTTSCCCSCCCSC-CTTCCEEECCSSCCC-CBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred CCeEEEecCCCccccCccC-CCCCeEEECCCCcCC-EeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCC
Confidence 5677888888887777655 367888888887654 45555568888888888888888876 77788888888888888
Q ss_pred CcccCc-ccccCCCCCcEEecccCcCcccCc-ccccCccCCEEEecCCCCCcc--cChhhhcCCCCCcEEEcCCCcccce
Q 002313 290 CLVVDV-AIIGDLKKLEILSLKHSSIEQLPR-EIGQLTCLKLLDLSNCSKLKE--IRPNVISNLTRLEELYMGNSFTQWK 365 (937)
Q Consensus 290 ~~~~~l-~~i~~L~~L~~L~L~~~~l~~lp~-~i~~L~~L~~L~l~~~~~l~~--lp~~~l~~L~~L~~L~l~~~~~~~~ 365 (937)
|.++.+ ..+. ++|++|++++|.+..++. .++++++|++|++++|. +.. +....++++++|++|++++|.+.
T Consensus 110 n~l~~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~~~l~~L~~L~l~~n~l~-- 184 (330)
T 1xku_A 110 NQLKELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNP-LKSSGIENGAFQGMKKLSYIRIADTNIT-- 184 (330)
T ss_dssp SCCSBCCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSC-CCGGGBCTTGGGGCTTCCEEECCSSCCC--
T ss_pred CcCCccChhhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCCc-CCccCcChhhccCCCCcCEEECCCCccc--
Confidence 887766 3333 688888888888887764 47888888888888754 432 33344778888888888887654
Q ss_pred ecCCCCCChhhhcCCCCCCeEEeecCCCCC
Q 002313 366 VEGQSNASLGELKQLSRLTTLEVHIPDAQV 395 (937)
Q Consensus 366 ~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~ 395 (937)
. ....+ .++|+.|+++++.+..
T Consensus 185 --~----l~~~~--~~~L~~L~l~~n~l~~ 206 (330)
T 1xku_A 185 --T----IPQGL--PPSLTELHLDGNKITK 206 (330)
T ss_dssp --S----CCSSC--CTTCSEEECTTSCCCE
T ss_pred --c----CCccc--cccCCEEECCCCcCCc
Confidence 1 11111 1578888887776543
No 49
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.79 E-value=5.6e-19 Score=189.57 Aligned_cols=175 Identities=23% Similarity=0.350 Sum_probs=149.4
Q ss_pred ccCCCcEEEccCCCCccCCccc-CCCccceeeecCCcccccCChhhhcCCCCccEEEecCCcCcccCccccCCCCCCEEE
Q 002313 208 IDEAPTAISIPFRGIYELPERL-GFLKLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHSLPSSLGCLINLRTLS 286 (937)
Q Consensus 208 ~~~~l~~l~l~~~~~~~l~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~lp~~i~~l~~Lr~L~ 286 (937)
...+++.++++++.+..+|..+ .+++|++|++.+|.+. .+|.. |+++++|++|++++|.+..+|..++++++|++|+
T Consensus 79 ~~~~l~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~l~-~lp~~-~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~ 156 (328)
T 4fcg_A 79 TQPGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAGLM-ELPDT-MQQFAGLETLTLARNPLRALPASIASLNRLRELS 156 (328)
T ss_dssp TSTTCCEEEEESSCCSSCCSCGGGGTTCSEEEEESSCCC-CCCSC-GGGGTTCSEEEEESCCCCCCCGGGGGCTTCCEEE
T ss_pred cccceeEEEccCCCchhcChhhhhCCCCCEEECCCCCcc-chhHH-HhccCCCCEEECCCCccccCcHHHhcCcCCCEEE
Confidence 3468999999999999999877 6899999999999876 78866 5889999999999999999999999999999999
Q ss_pred ccCCccc-Cc-ccc---------cCCCCCcEEecccCcCcccCcccccCccCCEEEecCCCCCcccChhhhcCCCCCcEE
Q 002313 287 LENCLVV-DV-AII---------GDLKKLEILSLKHSSIEQLPREIGQLTCLKLLDLSNCSKLKEIRPNVISNLTRLEEL 355 (937)
Q Consensus 287 L~~~~~~-~l-~~i---------~~L~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~l~~L~~L~~L 355 (937)
+++|... .+ ..+ +++++|++|++++|.++.+|..++++++|++|++++| .+..+|.. ++.+++|++|
T Consensus 157 L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~N-~l~~l~~~-l~~l~~L~~L 234 (328)
T 4fcg_A 157 IRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNS-PLSALGPA-IHHLPKLEEL 234 (328)
T ss_dssp EEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCCCCCGGGGGCTTCCEEEEESS-CCCCCCGG-GGGCTTCCEE
T ss_pred CCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcCcchHhhcCCCCCCEEEccCC-CCCcCchh-hccCCCCCEE
Confidence 9998654 33 444 4599999999999999999999999999999999995 47788886 8999999999
Q ss_pred EcCCCcccceecCCCCCChhhhcCCCCCCeEEeecCCC
Q 002313 356 YMGNSFTQWKVEGQSNASLGELKQLSRLTTLEVHIPDA 393 (937)
Q Consensus 356 ~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~ 393 (937)
++++|... ...+..+..+++|+.|+++++..
T Consensus 235 ~Ls~n~~~-------~~~p~~~~~l~~L~~L~L~~n~~ 265 (328)
T 4fcg_A 235 DLRGCTAL-------RNYPPIFGGRAPLKRLILKDCSN 265 (328)
T ss_dssp ECTTCTTC-------CBCCCCTTCCCCCCEEECTTCTT
T ss_pred ECcCCcch-------hhhHHHhcCCCCCCEEECCCCCc
Confidence 99998654 23445677888899999887643
No 50
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.79 E-value=1.9e-20 Score=220.46 Aligned_cols=128 Identities=21% Similarity=0.247 Sum_probs=60.4
Q ss_pred CCccceeeecCCcccccCChhhhcCCCCccEEEecCC-cCcc--cCccccCCCCCCEEEccCCcccCc--c----cccCC
Q 002313 231 FLKLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGF-RFHS--LPSSLGCLINLRTLSLENCLVVDV--A----IIGDL 301 (937)
Q Consensus 231 ~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~L~~~-~~~~--lp~~i~~l~~Lr~L~L~~~~~~~l--~----~i~~L 301 (937)
+++|++|++.++......+..+...+++|++|++++| .+.. ++..+.++++|++|++++|.+... . ....+
T Consensus 104 ~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~ 183 (594)
T 2p1m_B 104 YTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTY 183 (594)
T ss_dssp CTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTC
T ss_pred CCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcC
Confidence 4556666665554333333333224556666666655 3332 333334555666666665554321 1 11244
Q ss_pred CCCcEEecccCc--Cc--ccCcccccCccCCEEEecCCCCCcccChhhhcCCCCCcEEEcCC
Q 002313 302 KKLEILSLKHSS--IE--QLPREIGQLTCLKLLDLSNCSKLKEIRPNVISNLTRLEELYMGN 359 (937)
Q Consensus 302 ~~L~~L~L~~~~--l~--~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~l~~L~~L~~L~l~~ 359 (937)
++|++|++++|. +. .++.-+.++++|++|++++|..+..++.. ++++++|++|++..
T Consensus 184 ~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~-~~~~~~L~~L~l~~ 244 (594)
T 2p1m_B 184 TSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATL-LQRAPQLEELGTGG 244 (594)
T ss_dssp CCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHH-HHHCTTCSEEECSB
T ss_pred CcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHH-HhcCCcceEccccc
Confidence 455666655554 11 11222234455556665555444444332 45555555555443
No 51
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.79 E-value=6.9e-19 Score=191.87 Aligned_cols=174 Identities=21% Similarity=0.251 Sum_probs=140.6
Q ss_pred cEEEccCCCCccCCcccCCCccceeeecCCcccccCChhhhcCCCCccEEEecCCcCccc-CccccCCCCCCEEEccCCc
Q 002313 213 TAISIPFRGIYELPERLGFLKLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHSL-PSSLGCLINLRTLSLENCL 291 (937)
Q Consensus 213 ~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~l-p~~i~~l~~Lr~L~L~~~~ 291 (937)
...+.+++.+..+|..+. ++|++|++.+|.+. .++...|.++++|++|++++|.+..+ |..|+++++|++|++++|.
T Consensus 34 ~~c~~~~~~l~~iP~~~~-~~L~~L~l~~n~i~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~ 111 (353)
T 2z80_A 34 GICKGSSGSLNSIPSGLT-EAVKSLDLSNNRIT-YISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNY 111 (353)
T ss_dssp SEEECCSTTCSSCCTTCC-TTCCEEECTTSCCC-EECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred eEeeCCCCCccccccccc-ccCcEEECCCCcCc-ccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCc
Confidence 346777888888887653 58999999888754 46665578999999999999999877 5668999999999999999
Q ss_pred ccCc--ccccCCCCCcEEecccCcCcccCc--ccccCccCCEEEecCCCCCcccChhhhcCCCCCcEEEcCCCcccceec
Q 002313 292 VVDV--AIIGDLKKLEILSLKHSSIEQLPR--EIGQLTCLKLLDLSNCSKLKEIRPNVISNLTRLEELYMGNSFTQWKVE 367 (937)
Q Consensus 292 ~~~l--~~i~~L~~L~~L~L~~~~l~~lp~--~i~~L~~L~~L~l~~~~~l~~lp~~~l~~L~~L~~L~l~~~~~~~~~~ 367 (937)
++.+ ..++++++|++|++++|.++.+|. .++++++|++|++++|..+..+++..++++++|++|++++|.+.
T Consensus 112 l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~---- 187 (353)
T 2z80_A 112 LSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQ---- 187 (353)
T ss_dssp CSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCC----
T ss_pred CCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcC----
Confidence 8877 338899999999999999998887 68899999999999976788887666889999999999888654
Q ss_pred CCCCCChhhhcCCCCCCeEEeecCCCCC
Q 002313 368 GQSNASLGELKQLSRLTTLEVHIPDAQV 395 (937)
Q Consensus 368 ~~~~~~~~~l~~l~~L~~L~l~~~~~~~ 395 (937)
......+..+++|+.|+++++....
T Consensus 188 ---~~~~~~l~~l~~L~~L~l~~n~l~~ 212 (353)
T 2z80_A 188 ---SYEPKSLKSIQNVSHLILHMKQHIL 212 (353)
T ss_dssp ---EECTTTTTTCSEEEEEEEECSCSTT
T ss_pred ---ccCHHHHhccccCCeecCCCCcccc
Confidence 2334567778888888888876543
No 52
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.78 E-value=5.4e-20 Score=216.62 Aligned_cols=131 Identities=18% Similarity=0.222 Sum_probs=89.8
Q ss_pred hhcCCCCccEEEecCCcCcc-cCcccc-CCCCCCEEEccCC-cccC--c-ccccCCCCCcEEecccCcCcc-----cCcc
Q 002313 252 FFEGMTELRVLDLTGFRFHS-LPSSLG-CLINLRTLSLENC-LVVD--V-AIIGDLKKLEILSLKHSSIEQ-----LPRE 320 (937)
Q Consensus 252 ~~~~l~~Lr~L~L~~~~~~~-lp~~i~-~l~~Lr~L~L~~~-~~~~--l-~~i~~L~~L~~L~L~~~~l~~-----lp~~ 320 (937)
++..+++|++|+++++.+.. .+..+. .+++|++|++++| .+.. + ..+.++++|++|++++|.++. ++..
T Consensus 100 l~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~ 179 (594)
T 2p1m_B 100 MSSSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHF 179 (594)
T ss_dssp HHHHCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGS
T ss_pred HHHhCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHH
Confidence 34578899999999998763 244454 6889999999998 4443 4 334478999999999987653 3333
Q ss_pred cccCccCCEEEecCCCCCcccChhh----hcCCCCCcEEEcCCCcccceecCCCCCChhhhcCCCCCCeEEeecC
Q 002313 321 IGQLTCLKLLDLSNCSKLKEIRPNV----ISNLTRLEELYMGNSFTQWKVEGQSNASLGELKQLSRLTTLEVHIP 391 (937)
Q Consensus 321 i~~L~~L~~L~l~~~~~l~~lp~~~----l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~ 391 (937)
...+++|++|++++|. ..+.... +.++++|++|++++|... ......+..+++|+.|++...
T Consensus 180 ~~~~~~L~~L~l~~~~--~~~~~~~l~~l~~~~~~L~~L~L~~~~~~-------~~l~~~~~~~~~L~~L~l~~~ 245 (594)
T 2p1m_B 180 PDTYTSLVSLNISCLA--SEVSFSALERLVTRCPNLKSLKLNRAVPL-------EKLATLLQRAPQLEELGTGGY 245 (594)
T ss_dssp CTTCCCCCEEECTTCC--SCCCHHHHHHHHHHCTTCCEEECCTTSCH-------HHHHHHHHHCTTCSEEECSBC
T ss_pred hhcCCcCcEEEecccC--CcCCHHHHHHHHHhCCCCcEEecCCCCcH-------HHHHHHHhcCCcceEcccccc
Confidence 4467799999999875 2232221 345689999999887321 113445667778888887654
No 53
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.78 E-value=2.9e-18 Score=180.82 Aligned_cols=205 Identities=21% Similarity=0.326 Sum_probs=161.9
Q ss_pred cCcchhhhhhccCCCcEEEccCCCCccCCcc-c-CCCccceeeecCCcccccCChhhhcCCCCccEEEecCCc-Cccc-C
Q 002313 198 VADLKEELDKIDEAPTAISIPFRGIYELPER-L-GFLKLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFR-FHSL-P 273 (937)
Q Consensus 198 ~~~~~~~~~~~~~~l~~l~l~~~~~~~l~~~-~-~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~-~~~l-p 273 (937)
+..+..+|...+.++++++++++.+..++.. + .+++|++|++.+|.+....| ..|..+++|++|++++|. +..+ |
T Consensus 20 ~~~l~~ip~~~~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~l~~n~~l~~~~~ 98 (285)
T 1ozn_A 20 QQGLQAVPVGIPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDA-AAFTGLALLEQLDLSDNAQLRSVDP 98 (285)
T ss_dssp SSCCSSCCTTCCTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECT-TTTTTCTTCCEEECCSCTTCCCCCT
T ss_pred cCCcccCCcCCCCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCH-hhcCCccCCCEEeCCCCCCccccCH
Confidence 3455666666778899999999999888754 3 68899999999887654334 446889999999999997 8877 7
Q ss_pred ccccCCCCCCEEEccCCcccCc--ccccCCCCCcEEecccCcCcccCcc-cccCccCCEEEecCCCCCcccChhhhcCCC
Q 002313 274 SSLGCLINLRTLSLENCLVVDV--AIIGDLKKLEILSLKHSSIEQLPRE-IGQLTCLKLLDLSNCSKLKEIRPNVISNLT 350 (937)
Q Consensus 274 ~~i~~l~~Lr~L~L~~~~~~~l--~~i~~L~~L~~L~L~~~~l~~lp~~-i~~L~~L~~L~l~~~~~l~~lp~~~l~~L~ 350 (937)
..+..+++|++|++++|.+..+ ..++++++|++|++++|.++.+|.. ++++++|++|++++| .+..++...++.++
T Consensus 99 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~ 177 (285)
T 1ozn_A 99 ATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGN-RISSVPERAFRGLH 177 (285)
T ss_dssp TTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCEECTTTTTTCT
T ss_pred HHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCC-cccccCHHHhcCcc
Confidence 7788999999999999988866 5688899999999999999888754 888999999999985 58888877688899
Q ss_pred CCcEEEcCCCcccceecCCCCCChhhhcCCCCCCeEEeecCCCCCCCccc--cccccceeEEE
Q 002313 351 RLEELYMGNSFTQWKVEGQSNASLGELKQLSRLTTLEVHIPDAQVMPQDL--VFVELERFRIC 411 (937)
Q Consensus 351 ~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~--~~~~L~~l~l~ 411 (937)
+|++|++++|.+. ...+..+..+++|+.|+++++.+..++... ..++|+.+.+.
T Consensus 178 ~L~~L~l~~n~l~-------~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 233 (285)
T 1ozn_A 178 SLDRLLLHQNRVA-------HVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLN 233 (285)
T ss_dssp TCCEEECCSSCCC-------EECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECC
T ss_pred ccCEEECCCCccc-------ccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEecc
Confidence 9999999988664 233566778889999999998887766542 44555555543
No 54
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.77 E-value=3.8e-18 Score=184.25 Aligned_cols=290 Identities=16% Similarity=0.230 Sum_probs=191.6
Q ss_pred CCcEEEccCCCCccCCcccCCCccceeeecCCcccccCChhhhcCCCCccEEEecCCcCccc-CccccCCCCCCEEEccC
Q 002313 211 APTAISIPFRGIYELPERLGFLKLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHSL-PSSLGCLINLRTLSLEN 289 (937)
Q Consensus 211 ~l~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~l-p~~i~~l~~Lr~L~L~~ 289 (937)
.++.++++++.+..+|..+ .+++++|++.+|.+. .++...|.++++|++|++++|.+..+ |..|+++++|++|++++
T Consensus 34 ~l~~l~~~~~~l~~ip~~~-~~~l~~L~l~~n~i~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 111 (332)
T 2ft3_A 34 HLRVVQCSDLGLKAVPKEI-SPDTTLLDLQNNDIS-ELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISK 111 (332)
T ss_dssp ETTEEECCSSCCSSCCSCC-CTTCCEEECCSSCCC-EECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCS
T ss_pred cCCEEECCCCCccccCCCC-CCCCeEEECCCCcCC-ccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCC
Confidence 4788888888888888766 468899999888754 44444578899999999999988877 77788899999999999
Q ss_pred CcccCc-ccccCCCCCcEEecccCcCcccCcc-cccCccCCEEEecCCCCCcc--cChhhhcCCCCCcEEEcCCCcccce
Q 002313 290 CLVVDV-AIIGDLKKLEILSLKHSSIEQLPRE-IGQLTCLKLLDLSNCSKLKE--IRPNVISNLTRLEELYMGNSFTQWK 365 (937)
Q Consensus 290 ~~~~~l-~~i~~L~~L~~L~L~~~~l~~lp~~-i~~L~~L~~L~l~~~~~l~~--lp~~~l~~L~~L~~L~l~~~~~~~~ 365 (937)
|.+..+ ..+. ++|++|++++|.+..+|.. ++++++|++|++++|. +.. +++..++.+ +|++|++++|.+.
T Consensus 112 n~l~~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~~~l-~L~~L~l~~n~l~-- 185 (332)
T 2ft3_A 112 NHLVEIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNP-LENSGFEPGAFDGL-KLNYLRISEAKLT-- 185 (332)
T ss_dssp SCCCSCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCC-CBGGGSCTTSSCSC-CCSCCBCCSSBCS--
T ss_pred CcCCccCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCc-cccCCCCcccccCC-ccCEEECcCCCCC--
Confidence 988876 3343 7899999999988888754 7889999999998854 432 334446677 8889998888664
Q ss_pred ecCCCCCChhhhcCCCCCCeEEeecCCCCCCCcc-c-cccccceeEEEecCcCCCCCCcCCcceEEEecccccchhhhHH
Q 002313 366 VEGQSNASLGELKQLSRLTTLEVHIPDAQVMPQD-L-VFVELERFRICIGDVWSWSDGYETSKTLKLQLNNSTYLGYGMK 443 (937)
Q Consensus 366 ~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~-~-~~~~L~~l~l~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~ 443 (937)
+ .+..+. ++|+.|+++++.+...+.. + ..++|+.|
T Consensus 186 --~----l~~~~~--~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L----------------------------------- 222 (332)
T 2ft3_A 186 --G----IPKDLP--ETLNELHLDHNKIQAIELEDLLRYSKLYRL----------------------------------- 222 (332)
T ss_dssp --S----CCSSSC--SSCSCCBCCSSCCCCCCTTSSTTCTTCSCC-----------------------------------
T ss_pred --c----cCcccc--CCCCEEECCCCcCCccCHHHhcCCCCCCEE-----------------------------------
Confidence 1 111221 5788888888877666532 2 33344443
Q ss_pred HHhhcccccccccccChhhhhhcccchhhcccCcEEEeecCCceEEEEccCCccccccccceeccccccccccccccccc
Q 002313 444 MLLKRTEDLHLDELAGFKNVVHELDDEEGFARLRHLHVHNGPEILHILNSDGRVGTFPLLESLFLHNLINLEKVCDGKVR 523 (937)
Q Consensus 444 ~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~l~~~~~~~~~ 523 (937)
++++..........+.. +++|++|+++++. +..+ +.....+++|+.|+++++ .++.+....+.
T Consensus 223 ---------~L~~N~l~~~~~~~~~~---l~~L~~L~L~~N~-l~~l---p~~l~~l~~L~~L~l~~N-~l~~~~~~~~~ 285 (332)
T 2ft3_A 223 ---------GLGHNQIRMIENGSLSF---LPTLRELHLDNNK-LSRV---PAGLPDLKLLQVVYLHTN-NITKVGVNDFC 285 (332)
T ss_dssp ---------BCCSSCCCCCCTTGGGG---CTTCCEEECCSSC-CCBC---CTTGGGCTTCCEEECCSS-CCCBCCTTSSS
T ss_pred ---------ECCCCcCCcCChhHhhC---CCCCCEEECCCCc-Ceec---ChhhhcCccCCEEECCCC-CCCccChhHcc
Confidence 33332221111122333 7788888887763 3333 233466788888888874 45554332222
Q ss_pred CCCCCccCCCccEEEEecCCCcc-cccchhHHHhhccccEEEEcccc
Q 002313 524 LNEDDKSFSNLRIIKVEGCHRVK-HLFPFSLVKNLLQLQKVKVTDCT 569 (937)
Q Consensus 524 ~~~~~~~l~~L~~L~l~~C~~L~-~l~~~~~~~~l~~L~~L~i~~c~ 569 (937)
.......+++|+.|++.+++-.. .+++ ..+..+++|+.+++.++.
T Consensus 286 ~~~~~~~~~~l~~L~l~~N~~~~~~~~~-~~~~~l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 286 PVGFGVKRAYYNGISLFNNPVPYWEVQP-ATFRCVTDRLAIQFGNYK 331 (332)
T ss_dssp CSSCCSSSCCBSEEECCSSSSCGGGSCG-GGGTTBCCSTTEEC----
T ss_pred ccccccccccccceEeecCcccccccCc-ccccccchhhhhhccccc
Confidence 00011236789999999976331 3333 456788999999998864
No 55
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.77 E-value=1.2e-17 Score=188.66 Aligned_cols=173 Identities=23% Similarity=0.323 Sum_probs=142.3
Q ss_pred CCcEEEccCCCCccCCcccCCCccceeeecCCcccccCChhhhcCCCCccEEEecCCcCccc-CccccCCCCCCEEEccC
Q 002313 211 APTAISIPFRGIYELPERLGFLKLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHSL-PSSLGCLINLRTLSLEN 289 (937)
Q Consensus 211 ~l~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~l-p~~i~~l~~Lr~L~L~~ 289 (937)
..+.++..+..+..+|..+. +++++|++.+|.+.. ++...|.++++|++|+|++|.+..+ |..|.++++|++|++++
T Consensus 55 ~~~~v~c~~~~l~~iP~~~~-~~l~~L~L~~n~i~~-~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~ 132 (452)
T 3zyi_A 55 QFSKVVCTRRGLSEVPQGIP-SNTRYLNLMENNIQM-IQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFD 132 (452)
T ss_dssp SSCEEECCSSCCSSCCSCCC-TTCSEEECCSSCCCE-ECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CCcEEEECCCCcCccCCCCC-CCccEEECcCCcCce-ECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCC
Confidence 34677788888888887663 689999999887654 4444578999999999999999877 47789999999999999
Q ss_pred CcccCc--ccccCCCCCcEEecccCcCcccCc-ccccCccCCEEEecCCCCCcccChhhhcCCCCCcEEEcCCCccccee
Q 002313 290 CLVVDV--AIIGDLKKLEILSLKHSSIEQLPR-EIGQLTCLKLLDLSNCSKLKEIRPNVISNLTRLEELYMGNSFTQWKV 366 (937)
Q Consensus 290 ~~~~~l--~~i~~L~~L~~L~L~~~~l~~lp~-~i~~L~~L~~L~l~~~~~l~~lp~~~l~~L~~L~~L~l~~~~~~~~~ 366 (937)
|.++.+ ..++.+++|++|++++|.++.+|. .+.++++|++|++++|+.+..++...++.+++|++|++++|.+.
T Consensus 133 n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~--- 209 (452)
T 3zyi_A 133 NWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIK--- 209 (452)
T ss_dssp SCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCS---
T ss_pred CcCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCccc---
Confidence 998876 458899999999999999998875 68899999999999988899998877899999999999988664
Q ss_pred cCCCCCChhhhcCCCCCCeEEeecCCCC
Q 002313 367 EGQSNASLGELKQLSRLTTLEVHIPDAQ 394 (937)
Q Consensus 367 ~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 394 (937)
.+..+..+++|+.|+++++.+.
T Consensus 210 ------~~~~~~~l~~L~~L~Ls~N~l~ 231 (452)
T 3zyi_A 210 ------DMPNLTPLVGLEELEMSGNHFP 231 (452)
T ss_dssp ------SCCCCTTCTTCCEEECTTSCCS
T ss_pred ------ccccccccccccEEECcCCcCc
Confidence 1235677788888888877554
No 56
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.76 E-value=1.7e-17 Score=186.70 Aligned_cols=173 Identities=20% Similarity=0.315 Sum_probs=141.4
Q ss_pred CCcEEEccCCCCccCCcccCCCccceeeecCCcccccCChhhhcCCCCccEEEecCCcCcccC-ccccCCCCCCEEEccC
Q 002313 211 APTAISIPFRGIYELPERLGFLKLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHSLP-SSLGCLINLRTLSLEN 289 (937)
Q Consensus 211 ~l~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~lp-~~i~~l~~Lr~L~L~~ 289 (937)
..+.++..+..+..+|..+. ++++.|++.+|.+. .++...|.++++|++|+|++|.+..++ ..|.++++|++|++++
T Consensus 44 ~~~~v~c~~~~l~~iP~~~~-~~l~~L~L~~n~i~-~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~ 121 (440)
T 3zyj_A 44 QFSKVICVRKNLREVPDGIS-TNTRLLNLHENQIQ-IIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFD 121 (440)
T ss_dssp TSCEEECCSCCCSSCCSCCC-TTCSEEECCSCCCC-EECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCS
T ss_pred CCCEEEeCCCCcCcCCCCCC-CCCcEEEccCCcCC-eeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCC
Confidence 34577788888888887764 68899999888755 444455789999999999999998874 6788999999999999
Q ss_pred CcccCc--ccccCCCCCcEEecccCcCcccCc-ccccCccCCEEEecCCCCCcccChhhhcCCCCCcEEEcCCCccccee
Q 002313 290 CLVVDV--AIIGDLKKLEILSLKHSSIEQLPR-EIGQLTCLKLLDLSNCSKLKEIRPNVISNLTRLEELYMGNSFTQWKV 366 (937)
Q Consensus 290 ~~~~~l--~~i~~L~~L~~L~L~~~~l~~lp~-~i~~L~~L~~L~l~~~~~l~~lp~~~l~~L~~L~~L~l~~~~~~~~~ 366 (937)
|.++.+ ..+..+++|++|++++|.++.+|. .+.++++|++|++++|+.+..++...++++++|++|++++|.+.
T Consensus 122 n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~--- 198 (440)
T 3zyj_A 122 NRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLR--- 198 (440)
T ss_dssp SCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCS---
T ss_pred CcCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCc---
Confidence 998877 468999999999999999988875 68899999999999988888888877889999999999988654
Q ss_pred cCCCCCChhhhcCCCCCCeEEeecCCCC
Q 002313 367 EGQSNASLGELKQLSRLTTLEVHIPDAQ 394 (937)
Q Consensus 367 ~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 394 (937)
.+..+..+++|+.|+++++.+.
T Consensus 199 ------~~~~~~~l~~L~~L~Ls~N~l~ 220 (440)
T 3zyj_A 199 ------EIPNLTPLIKLDELDLSGNHLS 220 (440)
T ss_dssp ------SCCCCTTCSSCCEEECTTSCCC
T ss_pred ------cccccCCCcccCEEECCCCccC
Confidence 2234677778888888777554
No 57
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.75 E-value=2e-19 Score=204.41 Aligned_cols=157 Identities=22% Similarity=0.234 Sum_probs=104.9
Q ss_pred CccceeeecCCcccccCChhhhcCCCCccEEEecCCcCc-----ccCccccCCCCCCEEEccCCcccCc--ccc-cCCC-
Q 002313 232 LKLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFH-----SLPSSLGCLINLRTLSLENCLVVDV--AII-GDLK- 302 (937)
Q Consensus 232 ~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~-----~lp~~i~~l~~Lr~L~L~~~~~~~l--~~i-~~L~- 302 (937)
+++++|++.++.........+|..+++|++|++++|.+. .+|..+..+++|++|++++|.+... ..+ ..+.
T Consensus 3 ~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~ 82 (461)
T 1z7x_W 3 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQT 82 (461)
T ss_dssp EEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCS
T ss_pred ccceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhh
Confidence 467778887776544333455677888888888888876 4577778888888888888887642 222 2344
Q ss_pred ---CCcEEecccCcCc-----ccCcccccCccCCEEEecCCCCCcccChhhh-----cCCCCCcEEEcCCCcccceecCC
Q 002313 303 ---KLEILSLKHSSIE-----QLPREIGQLTCLKLLDLSNCSKLKEIRPNVI-----SNLTRLEELYMGNSFTQWKVEGQ 369 (937)
Q Consensus 303 ---~L~~L~L~~~~l~-----~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~l-----~~L~~L~~L~l~~~~~~~~~~~~ 369 (937)
+|++|++++|.+. .+|..+.++++|++|++++|. +.......+ ...++|++|++++|.+. +.
T Consensus 83 ~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~-i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~----~~ 157 (461)
T 1z7x_W 83 PSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNL-LGDAGLQLLCEGLLDPQCRLEKLQLEYCSLS----AA 157 (461)
T ss_dssp TTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSB-CHHHHHHHHHHHHTSTTCCCCEEECTTSCCB----GG
T ss_pred CCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCc-CchHHHHHHHHHHhcCCCcceEEECCCCCCC----HH
Confidence 6888888888777 457778888888888888855 443222112 23567888888887654 11
Q ss_pred C-CCChhhhcCCCCCCeEEeecCCC
Q 002313 370 S-NASLGELKQLSRLTTLEVHIPDA 393 (937)
Q Consensus 370 ~-~~~~~~l~~l~~L~~L~l~~~~~ 393 (937)
. ......+..+++|+.|+++++.+
T Consensus 158 ~~~~l~~~l~~~~~L~~L~L~~n~i 182 (461)
T 1z7x_W 158 SCEPLASVLRAKPDFKELTVSNNDI 182 (461)
T ss_dssp GHHHHHHHHHHCTTCCEEECCSSBC
T ss_pred HHHHHHHHHhhCCCCCEEECcCCCc
Confidence 0 11234456667788888877643
No 58
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.75 E-value=2.4e-18 Score=183.52 Aligned_cols=152 Identities=15% Similarity=0.245 Sum_probs=128.2
Q ss_pred CccceeeecCCcccc--cCChhhhcCCCCccEEEecC-CcCc-ccCccccCCCCCCEEEccCCccc-Cc-ccccCCCCCc
Q 002313 232 LKLKLFLFFTENLSL--QIPDPFFEGMTELRVLDLTG-FRFH-SLPSSLGCLINLRTLSLENCLVV-DV-AIIGDLKKLE 305 (937)
Q Consensus 232 ~~L~~L~l~~~~~~~--~~~~~~~~~l~~Lr~L~L~~-~~~~-~lp~~i~~l~~Lr~L~L~~~~~~-~l-~~i~~L~~L~ 305 (937)
.++++|++.++...+ .+|.. |.++++|++|++++ |.+. .+|..|+++++|++|++++|.+. .+ ..++++++|+
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~-l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~ 128 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSS-LANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLV 128 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGG-GGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCC
T ss_pred ceEEEEECCCCCccCCcccChh-HhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCC
Confidence 589999999998877 78876 58999999999995 7776 67999999999999999999987 33 7799999999
Q ss_pred EEecccCcCc-ccCcccccCccCCEEEecCCCCCc-ccChhhhcCCC-CCcEEEcCCCcccceecCCCCCChhhhcCCCC
Q 002313 306 ILSLKHSSIE-QLPREIGQLTCLKLLDLSNCSKLK-EIRPNVISNLT-RLEELYMGNSFTQWKVEGQSNASLGELKQLSR 382 (937)
Q Consensus 306 ~L~L~~~~l~-~lp~~i~~L~~L~~L~l~~~~~l~-~lp~~~l~~L~-~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~ 382 (937)
+|++++|.+. .+|..++++++|++|++++|. +. .+|.. +++++ +|++|++++|.+. ...+..+..++
T Consensus 129 ~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~-l~~~~p~~-l~~l~~~L~~L~L~~N~l~-------~~~~~~~~~l~- 198 (313)
T 1ogq_A 129 TLDFSYNALSGTLPPSISSLPNLVGITFDGNR-ISGAIPDS-YGSFSKLFTSMTISRNRLT-------GKIPPTFANLN- 198 (313)
T ss_dssp EEECCSSEEESCCCGGGGGCTTCCEEECCSSC-CEEECCGG-GGCCCTTCCEEECCSSEEE-------EECCGGGGGCC-
T ss_pred EEeCCCCccCCcCChHHhcCCCCCeEECcCCc-ccCcCCHH-HhhhhhcCcEEECcCCeee-------ccCChHHhCCc-
Confidence 9999999998 788999999999999999965 55 67766 88888 9999999999765 23344555555
Q ss_pred CCeEEeecCCCC
Q 002313 383 LTTLEVHIPDAQ 394 (937)
Q Consensus 383 L~~L~l~~~~~~ 394 (937)
|+.|+++++.+.
T Consensus 199 L~~L~Ls~N~l~ 210 (313)
T 1ogq_A 199 LAFVDLSRNMLE 210 (313)
T ss_dssp CSEEECCSSEEE
T ss_pred ccEEECcCCccc
Confidence 999999887543
No 59
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.74 E-value=1.1e-17 Score=178.32 Aligned_cols=173 Identities=22% Similarity=0.243 Sum_probs=92.1
Q ss_pred EEEccCCCCccCCcccCCCccceeeecCCcccccCChhhhcCCCCccEEEecCCcCccc---CccccCCCCCCEEEccCC
Q 002313 214 AISIPFRGIYELPERLGFLKLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHSL---PSSLGCLINLRTLSLENC 290 (937)
Q Consensus 214 ~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~l---p~~i~~l~~Lr~L~L~~~ 290 (937)
.++.+++.+..+|..+. +++++|++.+|.+. .+|..+|.++++|++|++++|.+..+ |..+..+++|++|++++|
T Consensus 11 ~l~c~~~~l~~ip~~~~-~~l~~L~L~~n~l~-~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n 88 (306)
T 2z66_A 11 EIRCNSKGLTSVPTGIP-SSATRLELESNKLQ-SLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFN 88 (306)
T ss_dssp EEECCSSCCSSCCSCCC-TTCCEEECCSSCCC-CCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSC
T ss_pred EEEcCCCCcccCCCCCC-CCCCEEECCCCccC-ccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCC
Confidence 44555555555555432 45566666555433 45555555666666666666655533 344555566666666666
Q ss_pred cccCc-ccccCCCCCcEEecccCcCcccCc--ccccCccCCEEEecCCCCCcccChhhhcCCCCCcEEEcCCCcccceec
Q 002313 291 LVVDV-AIIGDLKKLEILSLKHSSIEQLPR--EIGQLTCLKLLDLSNCSKLKEIRPNVISNLTRLEELYMGNSFTQWKVE 367 (937)
Q Consensus 291 ~~~~l-~~i~~L~~L~~L~L~~~~l~~lp~--~i~~L~~L~~L~l~~~~~l~~lp~~~l~~L~~L~~L~l~~~~~~~~~~ 367 (937)
.+..+ ..+..+++|++|++++|.++.+|. .+.++++|++|++++|. +...++..++.+++|++|++++|.+.
T Consensus 89 ~i~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~---- 163 (306)
T 2z66_A 89 GVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTH-TRVAFNGIFNGLSSLEVLKMAGNSFQ---- 163 (306)
T ss_dssp SEEEEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSC-CEECSTTTTTTCTTCCEEECTTCEEG----
T ss_pred ccccChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCc-CCccchhhcccCcCCCEEECCCCccc----
Confidence 55544 445556666666666665555543 45566666666666533 44444333555666666666655443
Q ss_pred CCCCCChhhhcCCCCCCeEEeecCCCCC
Q 002313 368 GQSNASLGELKQLSRLTTLEVHIPDAQV 395 (937)
Q Consensus 368 ~~~~~~~~~l~~l~~L~~L~l~~~~~~~ 395 (937)
+ ...+..+..+++|+.|+++++.+..
T Consensus 164 ~--~~~~~~~~~l~~L~~L~Ls~n~l~~ 189 (306)
T 2z66_A 164 E--NFLPDIFTELRNLTFLDLSQCQLEQ 189 (306)
T ss_dssp G--GEECSCCTTCTTCCEEECTTSCCCE
T ss_pred c--ccchhHHhhCcCCCEEECCCCCcCC
Confidence 0 0122334455556666665554443
No 60
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.74 E-value=8e-18 Score=183.46 Aligned_cols=191 Identities=18% Similarity=0.247 Sum_probs=157.2
Q ss_pred cCcchhhhhhccCCCcEEEccCCCCccCCcc-c-CCCccceeeecCCcccccCChhhhcCCCCccEEEecCCcCcccCcc
Q 002313 198 VADLKEELDKIDEAPTAISIPFRGIYELPER-L-GFLKLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHSLPSS 275 (937)
Q Consensus 198 ~~~~~~~~~~~~~~l~~l~l~~~~~~~l~~~-~-~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~lp~~ 275 (937)
+..+..+|....++++.++++++.+..++.. + .+++|++|++.+|.+.. ++...|.++++|++|++++|.+..+|..
T Consensus 40 ~~~l~~iP~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~Ls~n~l~~~~~~ 118 (353)
T 2z80_A 40 SGSLNSIPSGLTEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINT-IEEDSFSSLGSLEHLDLSYNYLSNLSSS 118 (353)
T ss_dssp STTCSSCCTTCCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCE-ECTTTTTTCTTCCEEECCSSCCSSCCHH
T ss_pred CCCcccccccccccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCc-cCHhhcCCCCCCCEEECCCCcCCcCCHh
Confidence 4556677777778999999999999998873 4 79999999999997654 4445579999999999999999999876
Q ss_pred -ccCCCCCCEEEccCCcccCcc---cccCCCCCcEEecccC-cCcccC-cccccCccCCEEEecCCCCCcccChhhhcCC
Q 002313 276 -LGCLINLRTLSLENCLVVDVA---IIGDLKKLEILSLKHS-SIEQLP-REIGQLTCLKLLDLSNCSKLKEIRPNVISNL 349 (937)
Q Consensus 276 -i~~l~~Lr~L~L~~~~~~~l~---~i~~L~~L~~L~L~~~-~l~~lp-~~i~~L~~L~~L~l~~~~~l~~lp~~~l~~L 349 (937)
++++++|++|++++|.+..++ .++++++|++|++++| .+..++ ..++++++|++|++++|. +..+++..++++
T Consensus 119 ~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~l~~l 197 (353)
T 2z80_A 119 WFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASD-LQSYEPKSLKSI 197 (353)
T ss_dssp HHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETT-CCEECTTTTTTC
T ss_pred HhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCC-cCccCHHHHhcc
Confidence 899999999999999998773 5899999999999999 577775 579999999999999965 666655559999
Q ss_pred CCCcEEEcCCCcccceecCCCCCChhhhcCCCCCCeEEeecCCCCCCC
Q 002313 350 TRLEELYMGNSFTQWKVEGQSNASLGELKQLSRLTTLEVHIPDAQVMP 397 (937)
Q Consensus 350 ~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~ 397 (937)
++|++|++++|.+. ......+..+++|+.|+++++.+...+
T Consensus 198 ~~L~~L~l~~n~l~-------~~~~~~~~~~~~L~~L~L~~n~l~~~~ 238 (353)
T 2z80_A 198 QNVSHLILHMKQHI-------LLLEIFVDVTSSVECLELRDTDLDTFH 238 (353)
T ss_dssp SEEEEEEEECSCST-------THHHHHHHHTTTEEEEEEESCBCTTCC
T ss_pred ccCCeecCCCCccc-------cchhhhhhhcccccEEECCCCcccccc
Confidence 99999999988653 111223445789999999998776543
No 61
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.74 E-value=1.1e-16 Score=184.95 Aligned_cols=113 Identities=19% Similarity=0.184 Sum_probs=72.6
Q ss_pred ccceeeecCCcccccCChhhhcCCCCccEEEecCCcCcccCccccCCCCCCEEEccCCcccCcccccCCCCCcEEecccC
Q 002313 233 KLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHSLPSSLGCLINLRTLSLENCLVVDVAIIGDLKKLEILSLKHS 312 (937)
Q Consensus 233 ~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~lp~~i~~l~~Lr~L~L~~~~~~~l~~i~~L~~L~~L~L~~~ 312 (937)
++++|++.++.+. .+|..++ ++|++|++++|.++.+|. .+++|++|++++|.++.++. .+++|++|++++|
T Consensus 41 ~l~~L~ls~n~L~-~lp~~l~---~~L~~L~L~~N~l~~lp~---~l~~L~~L~Ls~N~l~~lp~--~l~~L~~L~Ls~N 111 (622)
T 3g06_A 41 GNAVLNVGESGLT-TLPDCLP---AHITTLVIPDNNLTSLPA---LPPELRTLEVSGNQLTSLPV--LPPGLLELSIFSN 111 (622)
T ss_dssp CCCEEECCSSCCS-CCCSCCC---TTCSEEEECSCCCSCCCC---CCTTCCEEEECSCCCSCCCC--CCTTCCEEEECSC
T ss_pred CCcEEEecCCCcC-ccChhhC---CCCcEEEecCCCCCCCCC---cCCCCCEEEcCCCcCCcCCC--CCCCCCEEECcCC
Confidence 4667777666543 5665442 567777777777777765 45677777777777666644 5667777777777
Q ss_pred cCcccCcccccCccCCEEEecCCCCCcccChhhhcCCCCCcEEEcCCCcc
Q 002313 313 SIEQLPREIGQLTCLKLLDLSNCSKLKEIRPNVISNLTRLEELYMGNSFT 362 (937)
Q Consensus 313 ~l~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~l~~L~~L~~L~l~~~~~ 362 (937)
.++.+|. .+++|++|++++| .+..+|.. +++|++|++++|.+
T Consensus 112 ~l~~l~~---~l~~L~~L~L~~N-~l~~lp~~----l~~L~~L~Ls~N~l 153 (622)
T 3g06_A 112 PLTHLPA---LPSGLCKLWIFGN-QLTSLPVL----PPGLQELSVSDNQL 153 (622)
T ss_dssp CCCCCCC---CCTTCCEEECCSS-CCSCCCCC----CTTCCEEECCSSCC
T ss_pred cCCCCCC---CCCCcCEEECCCC-CCCcCCCC----CCCCCEEECcCCcC
Confidence 7776665 4566777777664 36666542 35666666666644
No 62
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.73 E-value=1.8e-16 Score=183.09 Aligned_cols=258 Identities=19% Similarity=0.147 Sum_probs=190.3
Q ss_pred CCCcEEEccCCCCccCCcccCCCccceeeecCCcccccCChhhhcCCCCccEEEecCCcCcccCccccCCCCCCEEEccC
Q 002313 210 EAPTAISIPFRGIYELPERLGFLKLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHSLPSSLGCLINLRTLSLEN 289 (937)
Q Consensus 210 ~~l~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~lp~~i~~l~~Lr~L~L~~ 289 (937)
.+++.++++++.+..+|..+. ++|++|++.+|.+. .+|. .+++|++|+|++|.++.+|. .+++|++|++++
T Consensus 40 ~~l~~L~ls~n~L~~lp~~l~-~~L~~L~L~~N~l~-~lp~----~l~~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~ 110 (622)
T 3g06_A 40 NGNAVLNVGESGLTTLPDCLP-AHITTLVIPDNNLT-SLPA----LPPELRTLEVSGNQLTSLPV---LPPGLLELSIFS 110 (622)
T ss_dssp HCCCEEECCSSCCSCCCSCCC-TTCSEEEECSCCCS-CCCC----CCTTCCEEEECSCCCSCCCC---CCTTCCEEEECS
T ss_pred CCCcEEEecCCCcCccChhhC-CCCcEEEecCCCCC-CCCC----cCCCCCEEEcCCCcCCcCCC---CCCCCCEEECcC
Confidence 368899999999999998775 89999999999754 6775 57899999999999999987 789999999999
Q ss_pred CcccCcccccCCCCCcEEecccCcCcccCcccccCccCCEEEecCCCCCcccChhhhcCCCCCcEEEcCCCcccceecCC
Q 002313 290 CLVVDVAIIGDLKKLEILSLKHSSIEQLPREIGQLTCLKLLDLSNCSKLKEIRPNVISNLTRLEELYMGNSFTQWKVEGQ 369 (937)
Q Consensus 290 ~~~~~l~~i~~L~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~l~~L~~L~~L~l~~~~~~~~~~~~ 369 (937)
|.++.++. .+.+|++|++++|.++.+|.. +++|++|++++| .+..+|. .+.+|+.|++++|.+. +
T Consensus 111 N~l~~l~~--~l~~L~~L~L~~N~l~~lp~~---l~~L~~L~Ls~N-~l~~l~~----~~~~L~~L~L~~N~l~----~- 175 (622)
T 3g06_A 111 NPLTHLPA--LPSGLCKLWIFGNQLTSLPVL---PPGLQELSVSDN-QLASLPA----LPSELCKLWAYNNQLT----S- 175 (622)
T ss_dssp CCCCCCCC--CCTTCCEEECCSSCCSCCCCC---CTTCCEEECCSS-CCSCCCC----CCTTCCEEECCSSCCS----C-
T ss_pred CcCCCCCC--CCCCcCEEECCCCCCCcCCCC---CCCCCEEECcCC-cCCCcCC----ccCCCCEEECCCCCCC----C-
Confidence 99988855 788999999999999999975 489999999996 5777765 3568899999988764 1
Q ss_pred CCCChhhhcCCCCCCeEEeecCCCCCCCccccccccceeEEEecCcCCCCCCcCCcceEEEecccccchhhhHHHHhhcc
Q 002313 370 SNASLGELKQLSRLTTLEVHIPDAQVMPQDLVFVELERFRICIGDVWSWSDGYETSKTLKLQLNNSTYLGYGMKMLLKRT 449 (937)
Q Consensus 370 ~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~L 449 (937)
.. ..+++|+.|++++|.+..++.. ..+|+.
T Consensus 176 ---l~---~~~~~L~~L~Ls~N~l~~l~~~--~~~L~~------------------------------------------ 205 (622)
T 3g06_A 176 ---LP---MLPSGLQELSVSDNQLASLPTL--PSELYK------------------------------------------ 205 (622)
T ss_dssp ---CC---CCCTTCCEEECCSSCCSCCCCC--CTTCCE------------------------------------------
T ss_pred ---Cc---ccCCCCcEEECCCCCCCCCCCc--cchhhE------------------------------------------
Confidence 11 4567899999999887765542 133333
Q ss_pred cccccccccChhhhhhcccchhhcccCcEEEeecCCceEEEEccCCccccccccceecccccccccccccccccCCCCCc
Q 002313 450 EDLHLDELAGFKNVVHELDDEEGFARLRHLHVHNGPEILHILNSDGRVGTFPLLESLFLHNLINLEKVCDGKVRLNEDDK 529 (937)
Q Consensus 450 ~~L~l~~~~~~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~l~~~~~~~~~~~~~~~ 529 (937)
|++.++.. . .++ ..+++|++|+++++ .+..++ ..+++|++|+++++ .++.+ | .
T Consensus 206 --L~L~~N~l-~----~l~--~~~~~L~~L~Ls~N-~L~~lp------~~l~~L~~L~Ls~N-~L~~l-----p-----~ 258 (622)
T 3g06_A 206 --LWAYNNRL-T----SLP--ALPSGLKELIVSGN-RLTSLP------VLPSELKELMVSGN-RLTSL-----P-----M 258 (622)
T ss_dssp --EECCSSCC-S----SCC--CCCTTCCEEECCSS-CCSCCC------CCCTTCCEEECCSS-CCSCC-----C-----C
T ss_pred --EECcCCcc-c----ccC--CCCCCCCEEEccCC-ccCcCC------CCCCcCcEEECCCC-CCCcC-----C-----c
Confidence 33333211 1 111 11467888888776 332221 45678888888875 45443 2 1
Q ss_pred cCCCccEEEEecCCCcccccchhHHHhhccccEEEEcccccc
Q 002313 530 SFSNLRIIKVEGCHRVKHLFPFSLVKNLLQLQKVKVTDCTNL 571 (937)
Q Consensus 530 ~l~~L~~L~l~~C~~L~~l~~~~~~~~l~~L~~L~i~~c~~l 571 (937)
.+++|+.|++++| +++.+|. .+..+++|+.|++++++--
T Consensus 259 ~~~~L~~L~Ls~N-~L~~lp~--~l~~l~~L~~L~L~~N~l~ 297 (622)
T 3g06_A 259 LPSGLLSLSVYRN-QLTRLPE--SLIHLSSETTVNLEGNPLS 297 (622)
T ss_dssp CCTTCCEEECCSS-CCCSCCG--GGGGSCTTCEEECCSCCCC
T ss_pred ccccCcEEeCCCC-CCCcCCH--HHhhccccCEEEecCCCCC
Confidence 5678888888885 6777764 4677888888888887643
No 63
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.72 E-value=5.1e-17 Score=182.70 Aligned_cols=189 Identities=21% Similarity=0.330 Sum_probs=160.3
Q ss_pred ccCcchhhhhhccCCCcEEEccCCCCccCCcc-c-CCCccceeeecCCcccccCChhhhcCCCCccEEEecCCcCcccCc
Q 002313 197 NVADLKEELDKIDEAPTAISIPFRGIYELPER-L-GFLKLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHSLPS 274 (937)
Q Consensus 197 ~~~~~~~~~~~~~~~l~~l~l~~~~~~~l~~~-~-~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~lp~ 274 (937)
.+..+..+|......++.+++++|.+..++.. + .+++|++|++.+|.+. .++...|.++++|++|+|++|.++.+|.
T Consensus 51 ~~~~l~~iP~~~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~-~i~~~~~~~l~~L~~L~L~~n~l~~~~~ 129 (440)
T 3zyj_A 51 VRKNLREVPDGISTNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIR-TIEIGAFNGLANLNTLELFDNRLTTIPN 129 (440)
T ss_dssp CSCCCSSCCSCCCTTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCC-EECGGGGTTCSSCCEEECCSSCCSSCCT
T ss_pred CCCCcCcCCCCCCCCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCC-ccChhhccCCccCCEEECCCCcCCeeCH
Confidence 34567777877888999999999999987644 3 7899999999999754 5566668999999999999999999865
Q ss_pred -cccCCCCCCEEEccCCcccCc--ccccCCCCCcEEecccC-cCcccCc-ccccCccCCEEEecCCCCCcccChhhhcCC
Q 002313 275 -SLGCLINLRTLSLENCLVVDV--AIIGDLKKLEILSLKHS-SIEQLPR-EIGQLTCLKLLDLSNCSKLKEIRPNVISNL 349 (937)
Q Consensus 275 -~i~~l~~Lr~L~L~~~~~~~l--~~i~~L~~L~~L~L~~~-~l~~lp~-~i~~L~~L~~L~l~~~~~l~~lp~~~l~~L 349 (937)
.|..+++|++|++++|.+..+ ..+.++++|++|+++++ .+..+|. .+.++++|++|++++| .+..+|. +..+
T Consensus 130 ~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n-~l~~~~~--~~~l 206 (440)
T 3zyj_A 130 GAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMC-NLREIPN--LTPL 206 (440)
T ss_dssp TTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTS-CCSSCCC--CTTC
T ss_pred hHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCC-cCccccc--cCCC
Confidence 699999999999999999876 57999999999999995 6777775 6899999999999995 5888885 8999
Q ss_pred CCCcEEEcCCCcccceecCCCCCChhhhcCCCCCCeEEeecCCCCCC
Q 002313 350 TRLEELYMGNSFTQWKVEGQSNASLGELKQLSRLTTLEVHIPDAQVM 396 (937)
Q Consensus 350 ~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~ 396 (937)
++|++|++++|.+. ......+..+++|+.|+++++.+..+
T Consensus 207 ~~L~~L~Ls~N~l~-------~~~~~~~~~l~~L~~L~L~~n~l~~~ 246 (440)
T 3zyj_A 207 IKLDELDLSGNHLS-------AIRPGSFQGLMHLQKLWMIQSQIQVI 246 (440)
T ss_dssp SSCCEEECTTSCCC-------EECTTTTTTCTTCCEEECTTCCCCEE
T ss_pred cccCEEECCCCccC-------ccChhhhccCccCCEEECCCCceeEE
Confidence 99999999999765 23456788889999999998866543
No 64
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.71 E-value=6.2e-17 Score=182.73 Aligned_cols=189 Identities=23% Similarity=0.301 Sum_probs=159.2
Q ss_pred ccCcchhhhhhccCCCcEEEccCCCCccCCcc-c-CCCccceeeecCCcccccCChhhhcCCCCccEEEecCCcCcccCc
Q 002313 197 NVADLKEELDKIDEAPTAISIPFRGIYELPER-L-GFLKLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHSLPS 274 (937)
Q Consensus 197 ~~~~~~~~~~~~~~~l~~l~l~~~~~~~l~~~-~-~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~lp~ 274 (937)
.+..+..+|...+.+++.|++++|.+..++.. + .+++|++|++.+|.+. .++...|.++++|++|+|++|.+..+|.
T Consensus 62 ~~~~l~~iP~~~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~ 140 (452)
T 3zyi_A 62 TRRGLSEVPQGIPSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIR-QIEVGAFNGLASLNTLELFDNWLTVIPS 140 (452)
T ss_dssp CSSCCSSCCSCCCTTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCC-EECTTTTTTCTTCCEEECCSSCCSBCCT
T ss_pred CCCCcCccCCCCCCCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccC-CcChhhccCcccCCEEECCCCcCCccCh
Confidence 34556677777788999999999999987544 4 7999999999999765 4555567999999999999999998865
Q ss_pred c-ccCCCCCCEEEccCCcccCc--ccccCCCCCcEEecccC-cCcccCc-ccccCccCCEEEecCCCCCcccChhhhcCC
Q 002313 275 S-LGCLINLRTLSLENCLVVDV--AIIGDLKKLEILSLKHS-SIEQLPR-EIGQLTCLKLLDLSNCSKLKEIRPNVISNL 349 (937)
Q Consensus 275 ~-i~~l~~Lr~L~L~~~~~~~l--~~i~~L~~L~~L~L~~~-~l~~lp~-~i~~L~~L~~L~l~~~~~l~~lp~~~l~~L 349 (937)
. |..+++|++|++++|.+..+ ..+.++++|++|+++++ .+..+|. .+..+++|++|++++| .+..+|. +..+
T Consensus 141 ~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n-~l~~~~~--~~~l 217 (452)
T 3zyi_A 141 GAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMC-NIKDMPN--LTPL 217 (452)
T ss_dssp TTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTS-CCSSCCC--CTTC
T ss_pred hhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCC-ccccccc--cccc
Confidence 4 88999999999999999876 57999999999999994 6778875 5899999999999995 5888875 8999
Q ss_pred CCCcEEEcCCCcccceecCCCCCChhhhcCCCCCCeEEeecCCCCCC
Q 002313 350 TRLEELYMGNSFTQWKVEGQSNASLGELKQLSRLTTLEVHIPDAQVM 396 (937)
Q Consensus 350 ~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~ 396 (937)
++|++|++++|.+. ......+..+++|+.|+++++.+..+
T Consensus 218 ~~L~~L~Ls~N~l~-------~~~~~~~~~l~~L~~L~L~~n~l~~~ 257 (452)
T 3zyi_A 218 VGLEELEMSGNHFP-------EIRPGSFHGLSSLKKLWVMNSQVSLI 257 (452)
T ss_dssp TTCCEEECTTSCCS-------EECGGGGTTCTTCCEEECTTSCCCEE
T ss_pred ccccEEECcCCcCc-------ccCcccccCccCCCEEEeCCCcCceE
Confidence 99999999999765 34456788899999999998866443
No 65
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.71 E-value=2.6e-16 Score=164.12 Aligned_cols=191 Identities=23% Similarity=0.370 Sum_probs=110.6
Q ss_pred CCcEEEccCCCCccCCcccCCCccceeeecCCcccccCChhhhcCCCCccEEEecCCcCcccCcc-ccCCCCCCEEEccC
Q 002313 211 APTAISIPFRGIYELPERLGFLKLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHSLPSS-LGCLINLRTLSLEN 289 (937)
Q Consensus 211 ~l~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~lp~~-i~~l~~Lr~L~L~~ 289 (937)
..+.++++++.+..+|..+. +++++|++.+|.+. .++...|.++++|++|++++|.+..+|.. |.++++|++|++++
T Consensus 17 ~~~~l~~~~~~l~~ip~~~~-~~l~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~ 94 (270)
T 2o6q_A 17 NKNSVDCSSKKLTAIPSNIP-ADTKKLDLQSNKLS-SLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTD 94 (270)
T ss_dssp TTTEEECTTSCCSSCCSCCC-TTCSEEECCSSCCS-CCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCS
T ss_pred CCCEEEccCCCCCccCCCCC-CCCCEEECcCCCCC-eeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCC
Confidence 34566666666666665442 45666666665543 34444456666666666666666666543 35566666666666
Q ss_pred CcccCc--ccccCCCCCcEEecccCcCcccCc-ccccCccCCEEEecCCCCCcccChhhhcCCCCCcEEEcCCCccccee
Q 002313 290 CLVVDV--AIIGDLKKLEILSLKHSSIEQLPR-EIGQLTCLKLLDLSNCSKLKEIRPNVISNLTRLEELYMGNSFTQWKV 366 (937)
Q Consensus 290 ~~~~~l--~~i~~L~~L~~L~L~~~~l~~lp~-~i~~L~~L~~L~l~~~~~l~~lp~~~l~~L~~L~~L~l~~~~~~~~~ 366 (937)
|.+..+ ..+..+++|++|++++|.++.+|. .++.+++|++|++++| .+..+|...++.+++|++|++++|.+.
T Consensus 95 n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~L~~n~l~--- 170 (270)
T 2o6q_A 95 NKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYN-ELQSLPKGVFDKLTSLKELRLYNNQLK--- 170 (270)
T ss_dssp SCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCS---
T ss_pred CcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCC-cCCccCHhHccCCcccceeEecCCcCc---
Confidence 666554 345666666666666666665553 3566666666666663 355666555566666666666666443
Q ss_pred cCCCCCChhhhcCCCCCCeEEeecCCCCCCCccc--cccccceeEEE
Q 002313 367 EGQSNASLGELKQLSRLTTLEVHIPDAQVMPQDL--VFVELERFRIC 411 (937)
Q Consensus 367 ~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~--~~~~L~~l~l~ 411 (937)
......+..+++|+.|+++++.+..++... ..++|+.+.+.
T Consensus 171 ----~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~ 213 (270)
T 2o6q_A 171 ----RVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQ 213 (270)
T ss_dssp ----CCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECC
T ss_pred ----EeChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEec
Confidence 122233555666666666666665555432 34555555554
No 66
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.70 E-value=2e-16 Score=166.64 Aligned_cols=175 Identities=19% Similarity=0.288 Sum_probs=148.5
Q ss_pred CcEEEccCCCCccCCcccCCCccceeeecCCcccccCChhhhcCCCCccEEEecCCcCccc-CccccCCCCCCEEEccCC
Q 002313 212 PTAISIPFRGIYELPERLGFLKLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHSL-PSSLGCLINLRTLSLENC 290 (937)
Q Consensus 212 l~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~l-p~~i~~l~~Lr~L~L~~~ 290 (937)
-+.++.+++.+..+|..+ .+++++|++.++.+. .++...|..+++|++|++++|.+..+ |..|..+++|++|++++|
T Consensus 13 ~~~~~c~~~~l~~ip~~~-~~~l~~L~l~~n~i~-~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 90 (285)
T 1ozn_A 13 KVTTSCPQQGLQAVPVGI-PAASQRIFLHGNRIS-HVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDN 90 (285)
T ss_dssp SCEEECCSSCCSSCCTTC-CTTCSEEECTTSCCC-EECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSC
T ss_pred CeEEEcCcCCcccCCcCC-CCCceEEEeeCCcCC-ccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCC
Confidence 367888888999998765 579999999998865 45656679999999999999999987 788999999999999999
Q ss_pred c-ccCc--ccccCCCCCcEEecccCcCcccC-cccccCccCCEEEecCCCCCcccChhhhcCCCCCcEEEcCCCccccee
Q 002313 291 L-VVDV--AIIGDLKKLEILSLKHSSIEQLP-REIGQLTCLKLLDLSNCSKLKEIRPNVISNLTRLEELYMGNSFTQWKV 366 (937)
Q Consensus 291 ~-~~~l--~~i~~L~~L~~L~L~~~~l~~lp-~~i~~L~~L~~L~l~~~~~l~~lp~~~l~~L~~L~~L~l~~~~~~~~~ 366 (937)
. +..+ ..+..+++|++|++++|.+..++ ..++++++|++|++++| .+..++...++.+++|++|++++|.+.
T Consensus 91 ~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~--- 166 (285)
T 1ozn_A 91 AQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDN-ALQALPDDTFRDLGNLTHLFLHGNRIS--- 166 (285)
T ss_dssp TTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCC---
T ss_pred CCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCC-cccccCHhHhccCCCccEEECCCCccc---
Confidence 7 7765 67899999999999999999884 66899999999999995 588888777899999999999998664
Q ss_pred cCCCCCChhhhcCCCCCCeEEeecCCCCCC
Q 002313 367 EGQSNASLGELKQLSRLTTLEVHIPDAQVM 396 (937)
Q Consensus 367 ~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~ 396 (937)
......+..+++|+.|+++++.+...
T Consensus 167 ----~~~~~~~~~l~~L~~L~l~~n~l~~~ 192 (285)
T 1ozn_A 167 ----SVPERAFRGLHSLDRLLLHQNRVAHV 192 (285)
T ss_dssp ----EECTTTTTTCTTCCEEECCSSCCCEE
T ss_pred ----ccCHHHhcCccccCEEECCCCccccc
Confidence 22234577889999999999877654
No 67
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=99.70 E-value=3.1e-17 Score=210.79 Aligned_cols=171 Identities=18% Similarity=0.234 Sum_probs=141.3
Q ss_pred CCCCCcccCCC-CCHHHHHHHHHHHhCCCCCCCchhHHHHHHHHhcCCCchHHHHHHHHhcCCChhHHHHHHHHhhcCCC
Q 002313 4 YEYSEDFLDWL-LSNEEASHLFEKIVGHSAKKSDFETIGVEIVAKCGGLPIAIKTIANALKNKSPRIWKDAVNQLSNSNP 82 (937)
Q Consensus 4 ~~~~~~~~l~~-L~~~~~~~lf~~~~~~~~~~~~~~~i~~~i~~kc~GlPLai~~ig~~L~~~~~~~W~~~l~~l~~~~~ 82 (937)
++....|+++. |+++|||+||.++++. ..+++.+++++|+++|+|+||||+++|+.|+.+. ..|+..++.+.....
T Consensus 274 ~~~~~~~~~~~~l~~~~a~~l~~~~~~~--~~~~~~~~~~~i~~~~~glPLal~~~~~~l~~~~-~~~~~~l~~l~~~~~ 350 (1249)
T 3sfz_A 274 MGPKHVVPVESGLGREKGLEILSLFVNM--KKEDLPAEAHSIIKECKGSPLVVSLIGALLRDFP-NRWAYYLRQLQNKQF 350 (1249)
T ss_dssp CSCBCCEECCSSCCHHHHHHHHHHHHTS--CSTTCCTHHHHHHHHTTTCHHHHHHHHHHHHHSS-SCHHHHHHHHHSCCC
T ss_pred cCCceEEEecCCCCHHHHHHHHHHhhCC--ChhhCcHHHHHHHHHhCCCHHHHHHHHHHhhcCh-hHHHHHHHHHhhhhh
Confidence 55667899996 9999999999999943 2356678899999999999999999999999875 579999999976554
Q ss_pred CCcccc-----ccccccccccccccCchhHHHHHHHhcCCCCCCcccHHHHHHHHhhcccccCcchHHHHHHHHHHHHHH
Q 002313 83 RKIQGM-----DADLSSIELSYEFLKCKEVKSLFQLCGLLKDGSRIAVDDLLRYVMGLRLLTNADTLEAARNRVHTLIDN 157 (937)
Q Consensus 83 ~~~~~~-----~~~~~~l~~sY~~L~~~~lk~cfl~~~~fp~~~~i~~~~li~~w~a~g~~~~~~~~~~~~~~~~~~~~~ 157 (937)
.++... +....++.+||+.||.+ .|.||+|||+||+++.|+++.++.+|.+++ ..+.+++++
T Consensus 351 ~~~~~~~~~~~~~~~~~l~~s~~~L~~~-~~~~~~~l~~f~~~~~i~~~~~~~~~~~~~------------~~~~~~l~~ 417 (1249)
T 3sfz_A 351 KRIRKSSSYDYEALDEAMSISVEMLRED-IKDYYTDLSILQKDVKVPTKVLCVLWDLET------------EEVEDILQE 417 (1249)
T ss_dssp CCSSCTTCTTHHHHHHHHHHHHHTSCTT-THHHHHHGGGSCTTCCEEHHHHHHHHTCCH------------HHHHHHHHH
T ss_pred hhcccccccchHHHHHHHHHHHHhCCHH-HHHHHHHhCccCCCCeeCHHHHHHHhCCCH------------HHHHHHHHH
Confidence 333221 22388999999999998 899999999999999999999999998762 233567999
Q ss_pred HhhcccccccC--CCCceeeehhhHHHHHHHHhhc
Q 002313 158 LKSASLLFDGD--SEDHAKMHRIIHAIAVSIAAEK 190 (937)
Q Consensus 158 L~~~~~~~~~~--~~~~~~mhd~i~~la~~~~~~e 190 (937)
|++++|++... ....|+|||+||++|...+.++
T Consensus 418 L~~~sl~~~~~~~~~~~~~~h~l~~~~~~~~~~~~ 452 (1249)
T 3sfz_A 418 FVNKSLLFCNRNGKSFCYYLHDLQVDFLTEKNRSQ 452 (1249)
T ss_dssp HHHTTSCEEEESSSSEEEECCHHHHHHHHHHTGGG
T ss_pred HHhccceEEecCCCceEEEecHHHHHHHHhhhhHH
Confidence 99999998653 2335999999999999887665
No 68
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.69 E-value=5.8e-16 Score=161.44 Aligned_cols=188 Identities=24% Similarity=0.394 Sum_probs=160.9
Q ss_pred cCcchhhhhhccCCCcEEEccCCCCccCCcc-c-CCCccceeeecCCcccccCChhhhcCCCCccEEEecCCcCcccCc-
Q 002313 198 VADLKEELDKIDEAPTAISIPFRGIYELPER-L-GFLKLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHSLPS- 274 (937)
Q Consensus 198 ~~~~~~~~~~~~~~l~~l~l~~~~~~~l~~~-~-~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~lp~- 274 (937)
+..+..+|...+..++.|+++++.+..++.. + .+++|++|++.+|.+. .+|..+|.++++|++|++++|.+..+|.
T Consensus 25 ~~~l~~ip~~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~i~~~~~~~l~~L~~L~l~~n~l~~~~~~ 103 (270)
T 2o6q_A 25 SKKLTAIPSNIPADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQ-TLPAGIFKELKNLETLWVTDNKLQALPIG 103 (270)
T ss_dssp TSCCSSCCSCCCTTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCS-CCCTTTTSSCTTCCEEECCSSCCCCCCTT
T ss_pred CCCCCccCCCCCCCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccC-eeChhhhcCCCCCCEEECCCCcCCcCCHh
Confidence 3456667777778899999999999998863 3 7899999999998754 7888888999999999999999998864
Q ss_pred cccCCCCCCEEEccCCcccCc--ccccCCCCCcEEecccCcCcccCcc-cccCccCCEEEecCCCCCcccChhhhcCCCC
Q 002313 275 SLGCLINLRTLSLENCLVVDV--AIIGDLKKLEILSLKHSSIEQLPRE-IGQLTCLKLLDLSNCSKLKEIRPNVISNLTR 351 (937)
Q Consensus 275 ~i~~l~~Lr~L~L~~~~~~~l--~~i~~L~~L~~L~L~~~~l~~lp~~-i~~L~~L~~L~l~~~~~l~~lp~~~l~~L~~ 351 (937)
.+..+++|++|++++|.++.+ ..++.+++|++|++++|.++.+|.. ++.+++|++|++++| .+..++...++++++
T Consensus 104 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~ 182 (270)
T 2o6q_A 104 VFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNN-QLKRVPEGAFDKLTE 182 (270)
T ss_dssp TTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTT
T ss_pred HcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCC-cCcEeChhHhccCCC
Confidence 578999999999999999877 4589999999999999999999865 799999999999995 588888877899999
Q ss_pred CcEEEcCCCcccceecCCCCCChhhhcCCCCCCeEEeecCCCC
Q 002313 352 LEELYMGNSFTQWKVEGQSNASLGELKQLSRLTTLEVHIPDAQ 394 (937)
Q Consensus 352 L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 394 (937)
|++|++++|.+. ......+..+++|+.|+++++...
T Consensus 183 L~~L~L~~N~l~-------~~~~~~~~~l~~L~~L~l~~N~~~ 218 (270)
T 2o6q_A 183 LKTLKLDNNQLK-------RVPEGAFDSLEKLKMLQLQENPWD 218 (270)
T ss_dssp CCEEECCSSCCS-------CCCTTTTTTCTTCCEEECCSSCBC
T ss_pred cCEEECCCCcCC-------cCCHHHhccccCCCEEEecCCCee
Confidence 999999999765 223345778899999999988653
No 69
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=99.69 E-value=2.7e-17 Score=190.56 Aligned_cols=143 Identities=17% Similarity=0.169 Sum_probs=118.3
Q ss_pred CcccCC------CCCHHHHHHHHHHHhCCCCCCCchhHHHHHHHHhcCCCchHHHHHHHHhcCC--ChhHHHHHHHHhhc
Q 002313 8 EDFLDW------LLSNEEASHLFEKIVGHSAKKSDFETIGVEIVAKCGGLPIAIKTIANALKNK--SPRIWKDAVNQLSN 79 (937)
Q Consensus 8 ~~~~l~------~L~~~~~~~lf~~~~~~~~~~~~~~~i~~~i~~kc~GlPLai~~ig~~L~~~--~~~~W~~~l~~l~~ 79 (937)
..|+++ +|+++|||+||+++.+.. ..+++.+| |+|+||||+++|+.|+++ +.++|+.+
T Consensus 285 ~vy~LeL~d~dL~LS~eEA~eLF~~~~g~~-----~eeL~~eI---CgGLPLALkLaGs~Lr~k~~s~eeW~~~------ 350 (1221)
T 1vt4_I 285 TTTHISLDHHSMTLTPDEVKSLLLKYLDCR-----PQDLPREV---LTTNPRRLSIIAESIRDGLATWDNWKHV------ 350 (1221)
T ss_dssp SSCEEEECSSSSCCCHHHHHHHHHHHHCCC-----TTTHHHHH---CCCCHHHHHHHHHHHHHSCSSHHHHHHC------
T ss_pred eEEEecCccccCCcCHHHHHHHHHHHcCCC-----HHHHHHHH---hCCCHHHHHHHHHHHhCCCCCHHHHhcC------
Confidence 467788 999999999999997542 33455555 999999999999999987 77888753
Q ss_pred CCCCCccccccccccccccccccCchhH-HHHHHHhcCCCCCCcccHHHHHHHHhhcccccCcchHHHHHHHHHHHHHHH
Q 002313 80 SNPRKIQGMDADLSSIELSYEFLKCKEV-KSLFQLCGLLKDGSRIAVDDLLRYVMGLRLLTNADTLEAARNRVHTLIDNL 158 (937)
Q Consensus 80 ~~~~~~~~~~~~~~~l~~sY~~L~~~~l-k~cfl~~~~fp~~~~i~~~~li~~w~a~g~~~~~~~~~~~~~~~~~~~~~L 158 (937)
..+....+|.+||+.||.+ . |+||+|||+||+++.|+++.++.+|+++|. ++ +.+++++|
T Consensus 351 -------~~~~I~aaLelSYd~Lp~e-elK~cFL~LAIFPed~~I~~elLa~LW~aeGe-------ed----Ae~~L~eL 411 (1221)
T 1vt4_I 351 -------NCDKLTTIIESSLNVLEPA-EYRKMFDRLSVFPPSAHIPTILLSLIWFDVIK-------SD----VMVVVNKL 411 (1221)
T ss_dssp -------SCHHHHHHHHHHHHHSCTT-HHHHHHHHTTSSCTTSCEEHHHHHHHHCSSCS-------HH----HHHHHHHH
T ss_pred -------ChhHHHHHHHHHHHhCCHH-HHHHHHHHHhCCCCCCCCCHHHHHHHhcCCCH-------HH----HHHHHHHH
Confidence 1122378899999999998 7 999999999999999999999999999981 12 34579999
Q ss_pred hhcccccccCCCCceeeehhhHHHH
Q 002313 159 KSASLLFDGDSEDHAKMHRIIHAIA 183 (937)
Q Consensus 159 ~~~~~~~~~~~~~~~~mhd~i~~la 183 (937)
++++|++..+....|+|||++++++
T Consensus 412 vdRSLLq~d~~~~rYrMHDLllELr 436 (1221)
T 1vt4_I 412 HKYSLVEKQPKESTISIPSIYLELK 436 (1221)
T ss_dssp HTSSSSSBCSSSSEEBCCCHHHHHH
T ss_pred HhhCCEEEeCCCCEEEehHHHHHHh
Confidence 9999998765567899999999966
No 70
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.69 E-value=3.3e-16 Score=167.02 Aligned_cols=227 Identities=17% Similarity=0.206 Sum_probs=176.6
Q ss_pred cCcchhhhhhccCCCcEEEccCCCCccCCccc--CCCccceeeecCCcccc--cCChhhhcCCCCccEEEecCCcCcccC
Q 002313 198 VADLKEELDKIDEAPTAISIPFRGIYELPERL--GFLKLKLFLFFTENLSL--QIPDPFFEGMTELRVLDLTGFRFHSLP 273 (937)
Q Consensus 198 ~~~~~~~~~~~~~~l~~l~l~~~~~~~l~~~~--~~~~L~~L~l~~~~~~~--~~~~~~~~~l~~Lr~L~L~~~~~~~lp 273 (937)
+..+..+|...+.++++++++++.+..++... .+++|++|++.+|.... ..+.. +..+++|++|++++|.+..+|
T Consensus 16 ~~~l~~ip~~~~~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~-~~~~~~L~~L~Ls~n~i~~l~ 94 (306)
T 2z66_A 16 SKGLTSVPTGIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQS-DFGTTSLKYLDLSFNGVITMS 94 (306)
T ss_dssp SSCCSSCCSCCCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHH-HHSCSCCCEEECCSCSEEEEE
T ss_pred CCCcccCCCCCCCCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccc-cccccccCEEECCCCccccCh
Confidence 34566667667789999999999999998864 78999999999987542 22444 467999999999999999999
Q ss_pred ccccCCCCCCEEEccCCcccCc---ccccCCCCCcEEecccCcCccc-CcccccCccCCEEEecCCCCCcc--cChhhhc
Q 002313 274 SSLGCLINLRTLSLENCLVVDV---AIIGDLKKLEILSLKHSSIEQL-PREIGQLTCLKLLDLSNCSKLKE--IRPNVIS 347 (937)
Q Consensus 274 ~~i~~l~~Lr~L~L~~~~~~~l---~~i~~L~~L~~L~L~~~~l~~l-p~~i~~L~~L~~L~l~~~~~l~~--lp~~~l~ 347 (937)
..+..+++|++|++++|.+..+ ..+..+++|++|++++|.+... |..++.+++|++|++++|. +.. +|.. ++
T Consensus 95 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~-~~ 172 (306)
T 2z66_A 95 SNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNS-FQENFLPDI-FT 172 (306)
T ss_dssp EEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCE-EGGGEECSC-CT
T ss_pred hhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCc-cccccchhH-Hh
Confidence 9999999999999999998866 3689999999999999998855 4568999999999999965 543 5554 89
Q ss_pred CCCCCcEEEcCCCcccceecCCCCCChhhhcCCCCCCeEEeecCCCCCCCccc--cccccceeEEEecCcC----CCCCC
Q 002313 348 NLTRLEELYMGNSFTQWKVEGQSNASLGELKQLSRLTTLEVHIPDAQVMPQDL--VFVELERFRICIGDVW----SWSDG 421 (937)
Q Consensus 348 ~L~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~--~~~~L~~l~l~~~~~~----~~~~~ 421 (937)
.+++|++|++++|.+. ......+..+++|+.|+++++.+..++... ..++|+.+.+..+..- .+...
T Consensus 173 ~l~~L~~L~Ls~n~l~-------~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~ 245 (306)
T 2z66_A 173 ELRNLTFLDLSQCQLE-------QLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQH 245 (306)
T ss_dssp TCTTCCEEECTTSCCC-------EECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCC
T ss_pred hCcCCCEEECCCCCcC-------CcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHHh
Confidence 9999999999998765 233456778899999999999887776533 5678888877654422 12222
Q ss_pred c-CCcceEEEeccc
Q 002313 422 Y-ETSKTLKLQLNN 434 (937)
Q Consensus 422 ~-~~~~~l~l~~~~ 434 (937)
. ..++.+.+..|.
T Consensus 246 ~~~~L~~L~L~~N~ 259 (306)
T 2z66_A 246 FPSSLAFLNLTQND 259 (306)
T ss_dssp CCTTCCEEECTTCC
T ss_pred hhccCCEEEccCCC
Confidence 2 245555555543
No 71
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.68 E-value=5.9e-16 Score=162.71 Aligned_cols=192 Identities=21% Similarity=0.229 Sum_probs=158.3
Q ss_pred cCCCcEEEccCCCCccCCcccCCCccceeeecCCcccccCChhhhcCCCCccEEEecCCcCcccCccccCCCCCCEEEcc
Q 002313 209 DEAPTAISIPFRGIYELPERLGFLKLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHSLPSSLGCLINLRTLSLE 288 (937)
Q Consensus 209 ~~~l~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~lp~~i~~l~~Lr~L~L~ 288 (937)
...++.++++++.+..+|..+. +++++|++.+|.+.. ++...|..+++|++|++++|.+..+|.. +.+++|++|+++
T Consensus 9 l~~l~~l~~~~~~l~~ip~~~~-~~l~~L~L~~N~l~~-~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~l~~L~~L~Ls 85 (290)
T 1p9a_G 9 VASHLEVNCDKRNLTALPPDLP-KDTTILHLSENLLYT-FSLATLMPYTRLTQLNLDRAELTKLQVD-GTLPVLGTLDLS 85 (290)
T ss_dssp STTCCEEECTTSCCSSCCSCCC-TTCCEEECTTSCCSE-EEGGGGTTCTTCCEEECTTSCCCEEECC-SCCTTCCEEECC
T ss_pred cCCccEEECCCCCCCcCCCCCC-CCCCEEEcCCCcCCc-cCHHHhhcCCCCCEEECCCCccCcccCC-CCCCcCCEEECC
Confidence 4578899999999999988764 789999999988654 4445578999999999999999988764 789999999999
Q ss_pred CCcccCc-ccccCCCCCcEEecccCcCcccC-cccccCccCCEEEecCCCCCcccChhhhcCCCCCcEEEcCCCccccee
Q 002313 289 NCLVVDV-AIIGDLKKLEILSLKHSSIEQLP-REIGQLTCLKLLDLSNCSKLKEIRPNVISNLTRLEELYMGNSFTQWKV 366 (937)
Q Consensus 289 ~~~~~~l-~~i~~L~~L~~L~L~~~~l~~lp-~~i~~L~~L~~L~l~~~~~l~~lp~~~l~~L~~L~~L~l~~~~~~~~~ 366 (937)
+|.+..+ ..+..+++|++|++++|.++.+| ..+..+++|++|++++| .+..+|.+.+..+++|++|++++|.+.
T Consensus 86 ~N~l~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N~l~--- 161 (290)
T 1p9a_G 86 HNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGN-ELKTLPPGLLTPTPKLEKLSLANNNLT--- 161 (290)
T ss_dssp SSCCSSCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTS-CCCCCCTTTTTTCTTCCEEECTTSCCS---
T ss_pred CCcCCcCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCC-CCCccChhhcccccCCCEEECCCCcCC---
Confidence 9999877 66889999999999999999988 46899999999999995 588888887889999999999998765
Q ss_pred cCCCCCChhhhcCCCCCCeEEeecCCCCCCCccc-cccccceeEEE
Q 002313 367 EGQSNASLGELKQLSRLTTLEVHIPDAQVMPQDL-VFVELERFRIC 411 (937)
Q Consensus 367 ~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~-~~~~L~~l~l~ 411 (937)
....+.+..+++|+.|+++++.+..+|..+ ...+|+.+.+.
T Consensus 162 ----~l~~~~~~~l~~L~~L~L~~N~l~~ip~~~~~~~~L~~l~L~ 203 (290)
T 1p9a_G 162 ----ELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLH 203 (290)
T ss_dssp ----CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCCCSEEECC
T ss_pred ----ccCHHHhcCcCCCCEEECCCCcCCccChhhcccccCCeEEeC
Confidence 223345678889999999999988887765 44456655543
No 72
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.68 E-value=1.7e-17 Score=177.52 Aligned_cols=150 Identities=21% Similarity=0.179 Sum_probs=100.1
Q ss_pred CCCccceeeecCCcccccCChhhhcCCCCccEEEecCCcCcccCccccCCCCCCEEEccCCcccCcccccCCCCCcEEec
Q 002313 230 GFLKLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHSLPSSLGCLINLRTLSLENCLVVDVAIIGDLKKLEILSL 309 (937)
Q Consensus 230 ~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~lp~~i~~l~~Lr~L~L~~~~~~~l~~i~~L~~L~~L~L 309 (937)
.+++|++|++.+|.+. .++...|.++++|++|++++|.+..+++ +..+++|++|++++|.++.++ ..++|++|++
T Consensus 32 ~~~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~Ls~n~l~~l~---~~~~L~~L~l 106 (317)
T 3o53_A 32 SAWNVKELDLSGNPLS-QISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNYVQELL---VGPSIETLHA 106 (317)
T ss_dssp TGGGCSEEECTTSCCC-CCCHHHHTTCTTCCEEECTTSCCEEEEE-ETTCTTCCEEECCSSEEEEEE---ECTTCCEEEC
T ss_pred cCCCCCEEECcCCccC-cCCHHHhhCCCcCCEEECCCCcCCcchh-hhhcCCCCEEECcCCcccccc---CCCCcCEEEC
Confidence 3557777777777654 3444446777888888888887776654 777788888888887765443 3377788888
Q ss_pred ccCcCcccCcccccCccCCEEEecCCCCCcccChhhhcCCCCCcEEEcCCCcccceecCCCCCChhhh-cCCCCCCeEEe
Q 002313 310 KHSSIEQLPREIGQLTCLKLLDLSNCSKLKEIRPNVISNLTRLEELYMGNSFTQWKVEGQSNASLGEL-KQLSRLTTLEV 388 (937)
Q Consensus 310 ~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~l-~~l~~L~~L~l 388 (937)
++|.+..++.. .+++|++|++++| .+..+++..++.+++|++|++++|.+. ...+..+ ..+++|+.|++
T Consensus 107 ~~n~l~~~~~~--~~~~L~~L~l~~N-~l~~~~~~~~~~l~~L~~L~Ls~N~l~-------~~~~~~~~~~l~~L~~L~L 176 (317)
T 3o53_A 107 ANNNISRVSCS--RGQGKKNIYLANN-KITMLRDLDEGCRSRVQYLDLKLNEID-------TVNFAELAASSDTLEHLNL 176 (317)
T ss_dssp CSSCCSEEEEC--CCSSCEEEECCSS-CCCSGGGBCTGGGSSEEEEECTTSCCC-------EEEGGGGGGGTTTCCEEEC
T ss_pred CCCccCCcCcc--ccCCCCEEECCCC-CCCCccchhhhccCCCCEEECCCCCCC-------cccHHHHhhccCcCCEEEC
Confidence 88777766643 3677888888774 466666555777778888888777554 1122333 35667777777
Q ss_pred ecCCCC
Q 002313 389 HIPDAQ 394 (937)
Q Consensus 389 ~~~~~~ 394 (937)
+++.+.
T Consensus 177 ~~N~l~ 182 (317)
T 3o53_A 177 QYNFIY 182 (317)
T ss_dssp TTSCCC
T ss_pred CCCcCc
Confidence 776543
No 73
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.68 E-value=1.9e-16 Score=162.00 Aligned_cols=200 Identities=12% Similarity=0.174 Sum_probs=166.2
Q ss_pred chhhhhhccCCCcEEEccCCCCccCCcc-c-CCCccceeeecCCcccccCChhhhcCCCCccEEEecC-CcCcccC-ccc
Q 002313 201 LKEELDKIDEAPTAISIPFRGIYELPER-L-GFLKLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTG-FRFHSLP-SSL 276 (937)
Q Consensus 201 ~~~~~~~~~~~l~~l~l~~~~~~~l~~~-~-~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~L~~-~~~~~lp-~~i 276 (937)
+..+|. ....++.++++++.+..++.. + .+++|++|++.+|.....++...|.++++|++|++++ |.++.+| ..|
T Consensus 23 l~~ip~-~~~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f 101 (239)
T 2xwt_C 23 IQRIPS-LPPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDAL 101 (239)
T ss_dssp CSSCCC-CCTTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSE
T ss_pred ccccCC-CCCcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHh
Confidence 455666 677899999999999998874 3 7899999999999755677777789999999999998 9999886 568
Q ss_pred cCCCCCCEEEccCCcccCcccccCCCCCc---EEecccC-cCcccCcc-cccCccCC-EEEecCCCCCcccChhhhcCCC
Q 002313 277 GCLINLRTLSLENCLVVDVAIIGDLKKLE---ILSLKHS-SIEQLPRE-IGQLTCLK-LLDLSNCSKLKEIRPNVISNLT 350 (937)
Q Consensus 277 ~~l~~Lr~L~L~~~~~~~l~~i~~L~~L~---~L~L~~~-~l~~lp~~-i~~L~~L~-~L~l~~~~~l~~lp~~~l~~L~ 350 (937)
..+++|++|++++|.++.++.++.+.+|+ +|++++| .++.+|.. +..+++|+ +|+++++ .+..+|...+.. +
T Consensus 102 ~~l~~L~~L~l~~n~l~~lp~~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n-~l~~i~~~~~~~-~ 179 (239)
T 2xwt_C 102 KELPLLKFLGIFNTGLKMFPDLTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNN-GFTSVQGYAFNG-T 179 (239)
T ss_dssp ECCTTCCEEEEEEECCCSCCCCTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSC-CCCEECTTTTTT-C
T ss_pred CCCCCCCEEeCCCCCCccccccccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCC-CCcccCHhhcCC-C
Confidence 99999999999999998887788888888 9999999 99999864 89999999 9999985 578898875555 8
Q ss_pred CCcEEEcCCCc-ccceecCCCCCChhhhcCC-CCCCeEEeecCCCCCCCccccccccceeEEE
Q 002313 351 RLEELYMGNSF-TQWKVEGQSNASLGELKQL-SRLTTLEVHIPDAQVMPQDLVFVELERFRIC 411 (937)
Q Consensus 351 ~L~~L~l~~~~-~~~~~~~~~~~~~~~l~~l-~~L~~L~l~~~~~~~~~~~~~~~~L~~l~l~ 411 (937)
+|++|++++|. +. ......+..+ ++|+.|+++++.+..+|.. .+.+++.|.+.
T Consensus 180 ~L~~L~L~~n~~l~-------~i~~~~~~~l~~~L~~L~l~~N~l~~l~~~-~~~~L~~L~l~ 234 (239)
T 2xwt_C 180 KLDAVYLNKNKYLT-------VIDKDAFGGVYSGPSLLDVSQTSVTALPSK-GLEHLKELIAR 234 (239)
T ss_dssp EEEEEECTTCTTCC-------EECTTTTTTCSBCCSEEECTTCCCCCCCCT-TCTTCSEEECT
T ss_pred CCCEEEcCCCCCcc-------cCCHHHhhccccCCcEEECCCCccccCChh-HhccCceeecc
Confidence 99999999984 54 1223456777 8999999999998887765 56777777653
No 74
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.67 E-value=9.9e-16 Score=162.76 Aligned_cols=188 Identities=18% Similarity=0.275 Sum_probs=156.0
Q ss_pred cCCCcEEEccCCCCccCCcccCCCccceeeecCCcccccCChhhhcCCCCccEEEecCCcCcccCccccCCCCCCEEEcc
Q 002313 209 DEAPTAISIPFRGIYELPERLGFLKLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHSLPSSLGCLINLRTLSLE 288 (937)
Q Consensus 209 ~~~l~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~lp~~i~~l~~Lr~L~L~ 288 (937)
+.++++++++++.+..++....+++|++|++.+|... .++. +..+++|++|++++|.+..+| .+..+++|++|+++
T Consensus 40 l~~L~~L~l~~~~i~~l~~~~~l~~L~~L~L~~n~i~-~~~~--~~~l~~L~~L~L~~n~l~~~~-~~~~l~~L~~L~l~ 115 (308)
T 1h6u_A 40 LDGITTLSAFGTGVTTIEGVQYLNNLIGLELKDNQIT-DLAP--LKNLTKITELELSGNPLKNVS-AIAGLQSIKTLDLT 115 (308)
T ss_dssp HHTCCEEECTTSCCCCCTTGGGCTTCCEEECCSSCCC-CCGG--GTTCCSCCEEECCSCCCSCCG-GGTTCTTCCEEECT
T ss_pred cCCcCEEEeeCCCccCchhhhccCCCCEEEccCCcCC-CChh--HccCCCCCEEEccCCcCCCch-hhcCCCCCCEEECC
Confidence 5679999999999988886557899999999988754 4554 688999999999999998876 58899999999999
Q ss_pred CCcccCcccccCCCCCcEEecccCcCcccCcccccCccCCEEEecCCCCCcccChhhhcCCCCCcEEEcCCCcccceecC
Q 002313 289 NCLVVDVAIIGDLKKLEILSLKHSSIEQLPREIGQLTCLKLLDLSNCSKLKEIRPNVISNLTRLEELYMGNSFTQWKVEG 368 (937)
Q Consensus 289 ~~~~~~l~~i~~L~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~l~~L~~L~~L~l~~~~~~~~~~~ 368 (937)
+|.+..++.++.+++|++|++++|.++.+|. ++.+++|++|++++| .+..++. ++.+++|++|++++|.+.
T Consensus 116 ~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n-~l~~~~~--l~~l~~L~~L~l~~n~l~----- 186 (308)
T 1h6u_A 116 STQITDVTPLAGLSNLQVLYLDLNQITNISP-LAGLTNLQYLSIGNA-QVSDLTP--LANLSKLTTLKADDNKIS----- 186 (308)
T ss_dssp TSCCCCCGGGTTCTTCCEEECCSSCCCCCGG-GGGCTTCCEEECCSS-CCCCCGG--GTTCTTCCEEECCSSCCC-----
T ss_pred CCCCCCchhhcCCCCCCEEECCCCccCcCcc-ccCCCCccEEEccCC-cCCCChh--hcCCCCCCEEECCCCccC-----
Confidence 9999888779999999999999999988876 889999999999985 5777776 789999999999988764
Q ss_pred CCCCChhhhcCCCCCCeEEeecCCCCCCCccccccccceeEEEec
Q 002313 369 QSNASLGELKQLSRLTTLEVHIPDAQVMPQDLVFVELERFRICIG 413 (937)
Q Consensus 369 ~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~l~l~~~ 413 (937)
.+..+..+++|+.|+++++.+...+.-...++|+.+.+..+
T Consensus 187 ----~~~~l~~l~~L~~L~L~~N~l~~~~~l~~l~~L~~L~l~~N 227 (308)
T 1h6u_A 187 ----DISPLASLPNLIEVHLKNNQISDVSPLANTSNLFIVTLTNQ 227 (308)
T ss_dssp ----CCGGGGGCTTCCEEECTTSCCCBCGGGTTCTTCCEEEEEEE
T ss_pred ----cChhhcCCCCCCEEEccCCccCccccccCCCCCCEEEccCC
Confidence 12237888899999999998877765446677777777644
No 75
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.67 E-value=4.5e-16 Score=163.10 Aligned_cols=203 Identities=21% Similarity=0.291 Sum_probs=157.5
Q ss_pred CcchhhhhhccCCCcEEEccCCCCccCCc-cc-CCCccceeeecCCcccccCChhhhcCCCCccEEEecCCcCcccC-cc
Q 002313 199 ADLKEELDKIDEAPTAISIPFRGIYELPE-RL-GFLKLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHSLP-SS 275 (937)
Q Consensus 199 ~~~~~~~~~~~~~l~~l~l~~~~~~~l~~-~~-~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~lp-~~ 275 (937)
..+..+|...+..+++++++++.+..++. .+ .+++|++|++.+|... .++...|.++++|++|++++|.+..++ ..
T Consensus 17 ~~l~~ip~~l~~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~ 95 (276)
T 2z62_A 17 LNFYKIPDNLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQ-TIEDGAYQSLSHLSTLILTGNPIQSLALGA 95 (276)
T ss_dssp SCCSSCCSSSCTTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCC-EECTTTTTTCTTCCEEECTTCCCCEECTTT
T ss_pred CCccccCCCCCCCccEEECCCCcccccCHhHhccccCCcEEECCCCcCC-ccCHHHccCCcCCCEEECCCCccCccChhh
Confidence 34555666667789999999999988876 33 6889999999988754 455555789999999999999998774 67
Q ss_pred ccCCCCCCEEEccCCcccCc--ccccCCCCCcEEecccCcCcc--cCcccccCccCCEEEecCCCCCcccChhhhcCCCC
Q 002313 276 LGCLINLRTLSLENCLVVDV--AIIGDLKKLEILSLKHSSIEQ--LPREIGQLTCLKLLDLSNCSKLKEIRPNVISNLTR 351 (937)
Q Consensus 276 i~~l~~Lr~L~L~~~~~~~l--~~i~~L~~L~~L~L~~~~l~~--lp~~i~~L~~L~~L~l~~~~~l~~lp~~~l~~L~~ 351 (937)
|.++++|++|++++|.+..+ ..++++++|++|++++|.++. +|..++++++|++|++++| .+..++...++.+.+
T Consensus 96 ~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~ 174 (276)
T 2z62_A 96 FSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSN-KIQSIYCTDLRVLHQ 174 (276)
T ss_dssp TTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSS-CCCEECGGGGHHHHT
T ss_pred hcCCccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCC-CCCcCCHHHhhhhhh
Confidence 89999999999999998877 368899999999999998886 6888999999999999985 477777665776766
Q ss_pred Cc----EEEcCCCcccceecCCCCCChhhhcCCCCCCeEEeecCCCCCCCccc--cccccceeEEE
Q 002313 352 LE----ELYMGNSFTQWKVEGQSNASLGELKQLSRLTTLEVHIPDAQVMPQDL--VFVELERFRIC 411 (937)
Q Consensus 352 L~----~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~--~~~~L~~l~l~ 411 (937)
|+ +|++++|.+. + .........+|+.|+++++.+..++... ..++|+.+.+.
T Consensus 175 L~~l~l~L~ls~n~l~----~----~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~ 232 (276)
T 2z62_A 175 MPLLNLSLDLSLNPMN----F----IQPGAFKEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLH 232 (276)
T ss_dssp CTTCCEEEECCSSCCC----E----ECTTSSCSCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECC
T ss_pred ccccceeeecCCCccc----c----cCccccCCCcccEEECCCCceeecCHhHhcccccccEEEcc
Confidence 66 8888888664 1 1112222337899999999888777653 45666666654
No 76
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.65 E-value=3.2e-17 Score=186.25 Aligned_cols=331 Identities=17% Similarity=0.132 Sum_probs=197.1
Q ss_pred ccCCCcEEEccCCCCcc-----CCccc-CCCccceeeecCCcccccCChhhhcCCC----CccEEEecCCcCc-----cc
Q 002313 208 IDEAPTAISIPFRGIYE-----LPERL-GFLKLKLFLFFTENLSLQIPDPFFEGMT----ELRVLDLTGFRFH-----SL 272 (937)
Q Consensus 208 ~~~~l~~l~l~~~~~~~-----l~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~l~----~Lr~L~L~~~~~~-----~l 272 (937)
..++++.++++++.+.. ++..+ .+++|++|++++|.+....+..++..++ +|++|++++|.+. .+
T Consensus 26 ~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l 105 (461)
T 1z7x_W 26 LLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVL 105 (461)
T ss_dssp HHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHHHH
T ss_pred hcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhhCCCceeEEEccCCCCCHHHHHHH
Confidence 35678888888887663 33433 5678888888887755444444555566 6888888888876 45
Q ss_pred CccccCCCCCCEEEccCCcccCc--cc-----ccCCCCCcEEecccCcCcc-----cCcccccCccCCEEEecCCCCCcc
Q 002313 273 PSSLGCLINLRTLSLENCLVVDV--AI-----IGDLKKLEILSLKHSSIEQ-----LPREIGQLTCLKLLDLSNCSKLKE 340 (937)
Q Consensus 273 p~~i~~l~~Lr~L~L~~~~~~~l--~~-----i~~L~~L~~L~L~~~~l~~-----lp~~i~~L~~L~~L~l~~~~~l~~ 340 (937)
|..+.++++|++|++++|.+... .. .....+|++|++++|.++. ++..+..+++|++|++++|. +..
T Consensus 106 ~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~-i~~ 184 (461)
T 1z7x_W 106 SSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNND-INE 184 (461)
T ss_dssp HHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSB-CHH
T ss_pred HHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCC-cch
Confidence 77788888888888888876532 22 2235678888888887763 45566777888888888754 544
Q ss_pred cChhhhc-----CCCCCcEEEcCCCcccceecCCC-CCChhhhcCCCCCCeEEeecCCCCCCC-----ccc--cccccce
Q 002313 341 IRPNVIS-----NLTRLEELYMGNSFTQWKVEGQS-NASLGELKQLSRLTTLEVHIPDAQVMP-----QDL--VFVELER 407 (937)
Q Consensus 341 lp~~~l~-----~L~~L~~L~l~~~~~~~~~~~~~-~~~~~~l~~l~~L~~L~l~~~~~~~~~-----~~~--~~~~L~~ 407 (937)
.....+. ..++|++|++++|.+. +.. ......+..+++|++|+++++.+.... ..+ ...+|+.
T Consensus 185 ~~~~~l~~~l~~~~~~L~~L~L~~n~l~----~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~ 260 (461)
T 1z7x_W 185 AGVRVLCQGLKDSPCQLEALKLESCGVT----SDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRT 260 (461)
T ss_dssp HHHHHHHHHHHHSCCCCCEEECTTSCCB----TTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCE
T ss_pred HHHHHHHHHHhcCCCCceEEEccCCCCc----HHHHHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceE
Confidence 3222222 3568888888887654 100 112445667778888888877543321 000 1234444
Q ss_pred eEEEecCcCCCCCCcCCcceEEEecccccch----hhhHHHHhhcccccccccccChhhhhhcccch--hhcccCcEEEe
Q 002313 408 FRICIGDVWSWSDGYETSKTLKLQLNNSTYL----GYGMKMLLKRTEDLHLDELAGFKNVVHELDDE--EGFARLRHLHV 481 (937)
Q Consensus 408 l~l~~~~~~~~~~~~~~~~~l~l~~~~~~~~----~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~--~~~~~L~~L~l 481 (937)
| .+..+..... .......+++|++|+++++.........+... ...++|++|++
T Consensus 261 L--------------------~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L 320 (461)
T 1z7x_W 261 L--------------------WIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWV 320 (461)
T ss_dssp E--------------------ECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEEC
T ss_pred E--------------------ECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEc
Confidence 4 4443322221 12223346788999998875543332233220 11368999999
Q ss_pred ecCCceEEEE-ccCCccccccccceecccccccccccccccccCCCC-CccCCCccEEEEecCCCcc-----cccchhHH
Q 002313 482 HNGPEILHIL-NSDGRVGTFPLLESLFLHNLINLEKVCDGKVRLNED-DKSFSNLRIIKVEGCHRVK-----HLFPFSLV 554 (937)
Q Consensus 482 ~~~~~~~~~~-~~~~~~~~~p~L~~L~l~~~~~l~~~~~~~~~~~~~-~~~l~~L~~L~l~~C~~L~-----~l~~~~~~ 554 (937)
++|.-..... ........+++|++|+++++ .+.......+. .. ....++|++|++++|. ++ .+| ..+
T Consensus 321 ~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n-~i~~~~~~~l~--~~l~~~~~~L~~L~L~~n~-i~~~~~~~l~--~~l 394 (461)
T 1z7x_W 321 KSCSFTAACCSHFSSVLAQNRFLLELQISNN-RLEDAGVRELC--QGLGQPGSVLRVLWLADCD-VSDSSCSSLA--ATL 394 (461)
T ss_dssp TTSCCBGGGHHHHHHHHHHCSSCCEEECCSS-BCHHHHHHHHH--HHHTSTTCCCCEEECTTSC-CCHHHHHHHH--HHH
T ss_pred CCCCCchHHHHHHHHHHhhCCCccEEEccCC-ccccccHHHHH--HHHcCCCCceEEEECCCCC-CChhhHHHHH--HHH
Confidence 9885211000 00001134588999999886 44432111110 00 0125799999999974 55 343 346
Q ss_pred HhhccccEEEEcccc
Q 002313 555 KNLLQLQKVKVTDCT 569 (937)
Q Consensus 555 ~~l~~L~~L~i~~c~ 569 (937)
..+++|++|++++|+
T Consensus 395 ~~~~~L~~L~l~~N~ 409 (461)
T 1z7x_W 395 LANHSLRELDLSNNC 409 (461)
T ss_dssp HHCCCCCEEECCSSS
T ss_pred HhCCCccEEECCCCC
Confidence 678999999999874
No 77
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.64 E-value=8e-17 Score=171.90 Aligned_cols=160 Identities=16% Similarity=0.236 Sum_probs=75.3
Q ss_pred CCccceeeecCCcccccCChhhh-cCCCCccEEEecCCcCcccCccccCC-----CCCCEEEccCCcccCc--ccccCCC
Q 002313 231 FLKLKLFLFFTENLSLQIPDPFF-EGMTELRVLDLTGFRFHSLPSSLGCL-----INLRTLSLENCLVVDV--AIIGDLK 302 (937)
Q Consensus 231 ~~~L~~L~l~~~~~~~~~~~~~~-~~l~~Lr~L~L~~~~~~~lp~~i~~l-----~~Lr~L~L~~~~~~~l--~~i~~L~ 302 (937)
+++|++|++.+|.+.+.+|..+| ..+++|++|++++|.+..+|..++.+ ++|++|++++|.+..+ ..+++++
T Consensus 94 l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~ 173 (312)
T 1wwl_A 94 ISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFP 173 (312)
T ss_dssp TSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSSSSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCS
T ss_pred cCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcchhHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCC
Confidence 45555555555554444444432 45555555555555555445444444 5555555555555443 3455555
Q ss_pred CCcEEecccCcCcc---cCccc--ccCccCCEEEecCCCCCc---ccChhhhcCCCCCcEEEcCCCcccceecCCCCCCh
Q 002313 303 KLEILSLKHSSIEQ---LPREI--GQLTCLKLLDLSNCSKLK---EIRPNVISNLTRLEELYMGNSFTQWKVEGQSNASL 374 (937)
Q Consensus 303 ~L~~L~L~~~~l~~---lp~~i--~~L~~L~~L~l~~~~~l~---~lp~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~ 374 (937)
+|++|++++|.+.. +|..+ +++++|++|++++|. +. .++...+..+++|++|++++|.+. +. ...
T Consensus 174 ~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~----~~--~~~ 246 (312)
T 1wwl_A 174 ALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAG-METPSGVCSALAAARVQLQGLDLSHNSLR----DA--AGA 246 (312)
T ss_dssp SCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSC-CCCHHHHHHHHHHTTCCCSEEECTTSCCC----SS--CCC
T ss_pred CCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCc-CcchHHHHHHHHhcCCCCCEEECCCCcCC----cc--cch
Confidence 55555555554332 23333 455555555555532 33 222222334555555555555433 10 001
Q ss_pred hhhcCCCCCCeEEeecCCCCCCC
Q 002313 375 GELKQLSRLTTLEVHIPDAQVMP 397 (937)
Q Consensus 375 ~~l~~l~~L~~L~l~~~~~~~~~ 397 (937)
..+..+++|+.|+++++.+..+|
T Consensus 247 ~~~~~l~~L~~L~Ls~N~l~~ip 269 (312)
T 1wwl_A 247 PSCDWPSQLNSLNLSFTGLKQVP 269 (312)
T ss_dssp SCCCCCTTCCEEECTTSCCSSCC
T ss_pred hhhhhcCCCCEEECCCCccChhh
Confidence 22333445555555555444433
No 78
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.64 E-value=2.1e-15 Score=158.40 Aligned_cols=184 Identities=18% Similarity=0.188 Sum_probs=157.5
Q ss_pred CcchhhhhhccCCCcEEEccCCCCccCCcc-c-CCCccceeeecCCcccccCChhhhcCCCCccEEEecCCcCcccCccc
Q 002313 199 ADLKEELDKIDEAPTAISIPFRGIYELPER-L-GFLKLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHSLPSSL 276 (937)
Q Consensus 199 ~~~~~~~~~~~~~l~~l~l~~~~~~~l~~~-~-~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~lp~~i 276 (937)
..+..+|...++.++.|++++|.+..++.. + .+++|++|++.+|.+.. ++. ...+++|++|++++|.+..+|..+
T Consensus 20 ~~l~~ip~~~~~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~--~~~l~~L~~L~Ls~N~l~~l~~~~ 96 (290)
T 1p9a_G 20 RNLTALPPDLPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTK-LQV--DGTLPVLGTLDLSHNQLQSLPLLG 96 (290)
T ss_dssp SCCSSCCSCCCTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCE-EEC--CSCCTTCCEEECCSSCCSSCCCCT
T ss_pred CCCCcCCCCCCCCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCc-ccC--CCCCCcCCEEECCCCcCCcCchhh
Confidence 455666766778999999999999887543 3 78999999999988653 443 278999999999999999999999
Q ss_pred cCCCCCCEEEccCCcccCc--ccccCCCCCcEEecccCcCcccCcc-cccCccCCEEEecCCCCCcccChhhhcCCCCCc
Q 002313 277 GCLINLRTLSLENCLVVDV--AIIGDLKKLEILSLKHSSIEQLPRE-IGQLTCLKLLDLSNCSKLKEIRPNVISNLTRLE 353 (937)
Q Consensus 277 ~~l~~Lr~L~L~~~~~~~l--~~i~~L~~L~~L~L~~~~l~~lp~~-i~~L~~L~~L~l~~~~~l~~lp~~~l~~L~~L~ 353 (937)
..+++|++|++++|.++.+ ..|.++++|++|++++|.++.+|.. +..+++|++|++++| .+..+|.+.+..+++|+
T Consensus 97 ~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N-~l~~l~~~~~~~l~~L~ 175 (290)
T 1p9a_G 97 QTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANN-NLTELPAGLLNGLENLD 175 (290)
T ss_dssp TTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTS-CCSCCCTTTTTTCTTCC
T ss_pred ccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCC-cCCccCHHHhcCcCCCC
Confidence 9999999999999999877 5699999999999999999999865 689999999999995 58999998789999999
Q ss_pred EEEcCCCcccceecCCCCCChhhhcCCCCCCeEEeecCCCC
Q 002313 354 ELYMGNSFTQWKVEGQSNASLGELKQLSRLTTLEVHIPDAQ 394 (937)
Q Consensus 354 ~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 394 (937)
+|++++|.+. ..+..+..+.+|+.+++++|...
T Consensus 176 ~L~L~~N~l~--------~ip~~~~~~~~L~~l~L~~Np~~ 208 (290)
T 1p9a_G 176 TLLLQENSLY--------TIPKGFFGSHLLPFAFLHGNPWL 208 (290)
T ss_dssp EEECCSSCCC--------CCCTTTTTTCCCSEEECCSCCBC
T ss_pred EEECCCCcCC--------ccChhhcccccCCeEEeCCCCcc
Confidence 9999999765 34455666778999999988653
No 79
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.64 E-value=3.2e-15 Score=153.96 Aligned_cols=175 Identities=22% Similarity=0.343 Sum_probs=146.1
Q ss_pred CCcEEEccCCCCccCCcccCCCccceeeecCCcccccCChhhhcCCCCccEEEecCCcCcccC-ccccCCCCCCEEEccC
Q 002313 211 APTAISIPFRGIYELPERLGFLKLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHSLP-SSLGCLINLRTLSLEN 289 (937)
Q Consensus 211 ~l~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~lp-~~i~~l~~Lr~L~L~~ 289 (937)
..++++.+++.+..+|..+. ++++.|++.+|.+.. ++...|.++++|++|++++|.+..++ ..|..+++|++|++++
T Consensus 15 ~~~~l~~~~~~l~~~p~~~~-~~l~~L~L~~n~l~~-~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 92 (251)
T 3m19_A 15 GKKEVDCQGKSLDSVPSGIP-ADTEKLDLQSTGLAT-LSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLAN 92 (251)
T ss_dssp GGTEEECTTCCCSSCCSCCC-TTCCEEECTTSCCCC-CCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTT
T ss_pred CCeEEecCCCCccccCCCCC-CCCCEEEccCCCcCc-cCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCC
Confidence 45678999999999988764 689999999888654 44455789999999999999998774 5589999999999999
Q ss_pred CcccCc--ccccCCCCCcEEecccCcCcccCcc-cccCccCCEEEecCCCCCcccChhhhcCCCCCcEEEcCCCccccee
Q 002313 290 CLVVDV--AIIGDLKKLEILSLKHSSIEQLPRE-IGQLTCLKLLDLSNCSKLKEIRPNVISNLTRLEELYMGNSFTQWKV 366 (937)
Q Consensus 290 ~~~~~l--~~i~~L~~L~~L~L~~~~l~~lp~~-i~~L~~L~~L~l~~~~~l~~lp~~~l~~L~~L~~L~l~~~~~~~~~ 366 (937)
|.++.+ ..++.+++|++|++++|.++.+|.. ++.+++|++|++++| .+..++...++.+++|++|++++|.+.
T Consensus 93 n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~L~~N~l~--- 168 (251)
T 3m19_A 93 NQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTN-QLQSIPAGAFDKLTNLQTLSLSTNQLQ--- 168 (251)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCS---
T ss_pred CcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCC-cCCccCHHHcCcCcCCCEEECCCCcCC---
Confidence 999876 5678999999999999999998865 688999999999995 588888877899999999999998765
Q ss_pred cCCCCCChhhhcCCCCCCeEEeecCCCCC
Q 002313 367 EGQSNASLGELKQLSRLTTLEVHIPDAQV 395 (937)
Q Consensus 367 ~~~~~~~~~~l~~l~~L~~L~l~~~~~~~ 395 (937)
......+..+++|+.|++++|....
T Consensus 169 ----~~~~~~~~~l~~L~~L~l~~N~~~c 193 (251)
T 3m19_A 169 ----SVPHGAFDRLGKLQTITLFGNQFDC 193 (251)
T ss_dssp ----CCCTTTTTTCTTCCEEECCSCCBCT
T ss_pred ----ccCHHHHhCCCCCCEEEeeCCceeC
Confidence 2333567788899999999887643
No 80
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.64 E-value=2.8e-15 Score=157.03 Aligned_cols=177 Identities=23% Similarity=0.312 Sum_probs=135.5
Q ss_pred cEEEccCCCCccCCcccCCCccceeeecCCcccccCChhhhcCCCCccEEEecCCcCcccC-ccccCCCCCCEEEccCCc
Q 002313 213 TAISIPFRGIYELPERLGFLKLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHSLP-SSLGCLINLRTLSLENCL 291 (937)
Q Consensus 213 ~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~lp-~~i~~l~~Lr~L~L~~~~ 291 (937)
..++-.+..+..+|..+. +++++|++.+|.+. .++...|.++++|++|++++|.+..++ ..+.++++|++|++++|.
T Consensus 10 ~~~~c~~~~l~~ip~~l~-~~l~~L~ls~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~ 87 (276)
T 2z62_A 10 ITYQCMELNFYKIPDNLP-FSTKNLDLSFNPLR-HLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP 87 (276)
T ss_dssp TEEECTTSCCSSCCSSSC-TTCCEEECTTCCCC-EECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCC
T ss_pred ceEEecCCCccccCCCCC-CCccEEECCCCccc-ccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCc
Confidence 345556666777887653 57999999888755 445445788999999999999998875 468899999999999998
Q ss_pred ccCc--ccccCCCCCcEEecccCcCcccCc-ccccCccCCEEEecCCCCCcc--cChhhhcCCCCCcEEEcCCCccccee
Q 002313 292 VVDV--AIIGDLKKLEILSLKHSSIEQLPR-EIGQLTCLKLLDLSNCSKLKE--IRPNVISNLTRLEELYMGNSFTQWKV 366 (937)
Q Consensus 292 ~~~l--~~i~~L~~L~~L~L~~~~l~~lp~-~i~~L~~L~~L~l~~~~~l~~--lp~~~l~~L~~L~~L~l~~~~~~~~~ 366 (937)
+..+ ..++++++|++|++++|.+..++. .++++++|++|++++|. +.. +|.. ++++++|++|++++|.+.
T Consensus 88 l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~l~~~-~~~l~~L~~L~Ls~N~l~--- 162 (276)
T 2z62_A 88 IQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNL-IQSFKLPEY-FSNLTNLEHLDLSSNKIQ--- 162 (276)
T ss_dssp CCEECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSC-CCCCCCCGG-GGGCTTCCEEECCSSCCC---
T ss_pred cCccChhhhcCCccccEEECCCCCccccCchhcccCCCCCEEECcCCc-cceecCchh-hccCCCCCEEECCCCCCC---
Confidence 8765 578899999999999999888875 68899999999999854 655 4554 889999999999988765
Q ss_pred cCCCCCChhhhcCCCCCC-eEEeecCCCCCCC
Q 002313 367 EGQSNASLGELKQLSRLT-TLEVHIPDAQVMP 397 (937)
Q Consensus 367 ~~~~~~~~~~l~~l~~L~-~L~l~~~~~~~~~ 397 (937)
+.....+..+..++.|. .|+++++.+..++
T Consensus 163 -~~~~~~~~~l~~L~~l~l~L~ls~n~l~~~~ 193 (276)
T 2z62_A 163 -SIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQ 193 (276)
T ss_dssp -EECGGGGHHHHTCTTCCEEEECCSSCCCEEC
T ss_pred -cCCHHHhhhhhhccccceeeecCCCcccccC
Confidence 22233455566666665 7888877665443
No 81
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.62 E-value=8.2e-15 Score=152.80 Aligned_cols=177 Identities=24% Similarity=0.300 Sum_probs=148.8
Q ss_pred hccCCCcEEEccCCCCccCCcccCCCccceeeecCCcccccCChhhhcCCCCccEEEecCCcCcccCc-cccCCCCCCEE
Q 002313 207 KIDEAPTAISIPFRGIYELPERLGFLKLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHSLPS-SLGCLINLRTL 285 (937)
Q Consensus 207 ~~~~~l~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~lp~-~i~~l~~Lr~L 285 (937)
..+++++.+++.++.+..++....+++|++|++.+|.+.. ++ .+..+++|++|++++|.+..+|. .++++++|++|
T Consensus 38 ~~l~~L~~L~l~~~~i~~~~~l~~l~~L~~L~l~~n~l~~-~~--~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 114 (272)
T 3rfs_A 38 NELNSIDQIIANNSDIKSVQGIQYLPNVRYLALGGNKLHD-IS--ALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKEL 114 (272)
T ss_dssp HHHTTCCEEECTTSCCCCCTTGGGCTTCCEEECTTSCCCC-CG--GGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEE
T ss_pred ccccceeeeeeCCCCcccccccccCCCCcEEECCCCCCCC-ch--hhcCCCCCCEEECCCCccCccChhHhcCCcCCCEE
Confidence 3467899999999999888876689999999999987653 43 36899999999999999998855 47899999999
Q ss_pred EccCCcccCc--ccccCCCCCcEEecccCcCcccCcc-cccCccCCEEEecCCCCCcccChhhhcCCCCCcEEEcCCCcc
Q 002313 286 SLENCLVVDV--AIIGDLKKLEILSLKHSSIEQLPRE-IGQLTCLKLLDLSNCSKLKEIRPNVISNLTRLEELYMGNSFT 362 (937)
Q Consensus 286 ~L~~~~~~~l--~~i~~L~~L~~L~L~~~~l~~lp~~-i~~L~~L~~L~l~~~~~l~~lp~~~l~~L~~L~~L~l~~~~~ 362 (937)
++++|.+..+ ..++.+++|++|++++|.++.+|.. ++.+++|++|++++| .+..++...++.+++|++|++++|.+
T Consensus 115 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~L~~N~l 193 (272)
T 3rfs_A 115 VLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYN-QLQSLPEGVFDKLTQLKDLRLYQNQL 193 (272)
T ss_dssp ECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred ECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCC-CcCccCHHHhcCCccCCEEECCCCcC
Confidence 9999999877 3489999999999999999988865 689999999999996 48888887779999999999999876
Q ss_pred cceecCCCCCChhhhcCCCCCCeEEeecCCCC
Q 002313 363 QWKVEGQSNASLGELKQLSRLTTLEVHIPDAQ 394 (937)
Q Consensus 363 ~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 394 (937)
. ......+..+++|+.|+++++...
T Consensus 194 ~-------~~~~~~~~~l~~L~~L~l~~N~~~ 218 (272)
T 3rfs_A 194 K-------SVPDGVFDRLTSLQYIWLHDNPWD 218 (272)
T ss_dssp S-------CCCTTTTTTCTTCCEEECCSSCBC
T ss_pred C-------ccCHHHHhCCcCCCEEEccCCCcc
Confidence 5 233345778899999999988654
No 82
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.62 E-value=4.7e-15 Score=155.96 Aligned_cols=173 Identities=24% Similarity=0.306 Sum_probs=148.7
Q ss_pred ccCCCcEEEccCCCCccCCcccCCCccceeeecCCcccccCChhhhcCCCCccEEEecCCcCcccCccccCCCCCCEEEc
Q 002313 208 IDEAPTAISIPFRGIYELPERLGFLKLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHSLPSSLGCLINLRTLSL 287 (937)
Q Consensus 208 ~~~~l~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~lp~~i~~l~~Lr~L~L 287 (937)
.+.+++.++++++.+..++....+++|++|++.+|.+.. ++. +.++++|++|++++|.+..+|. +..+++|++|++
T Consensus 44 ~l~~L~~L~l~~~~i~~~~~~~~l~~L~~L~L~~n~l~~-~~~--l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~L 119 (291)
T 1h6t_A 44 ELNSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTD-IKP--LANLKNLGWLFLDENKVKDLSS-LKDLKKLKSLSL 119 (291)
T ss_dssp HHHTCCEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCC-CGG--GTTCTTCCEEECCSSCCCCGGG-GTTCTTCCEEEC
T ss_pred hcCcccEEEccCCCcccChhHhcCCCCCEEEccCCccCC-Ccc--cccCCCCCEEECCCCcCCCChh-hccCCCCCEEEC
Confidence 356799999999999988775578999999999987653 444 6899999999999999998765 899999999999
Q ss_pred cCCcccCcccccCCCCCcEEecccCcCcccCcccccCccCCEEEecCCCCCcccChhhhcCCCCCcEEEcCCCcccceec
Q 002313 288 ENCLVVDVAIIGDLKKLEILSLKHSSIEQLPREIGQLTCLKLLDLSNCSKLKEIRPNVISNLTRLEELYMGNSFTQWKVE 367 (937)
Q Consensus 288 ~~~~~~~l~~i~~L~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~l~~L~~L~~L~l~~~~~~~~~~ 367 (937)
++|.+..++.++.+++|++|++++|.++.+ ..++.+++|++|++++| .+..+++ ++.+++|++|++++|.+.
T Consensus 120 ~~n~i~~~~~l~~l~~L~~L~l~~n~l~~~-~~l~~l~~L~~L~L~~N-~l~~~~~--l~~l~~L~~L~L~~N~i~---- 191 (291)
T 1h6t_A 120 EHNGISDINGLVHLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLEDN-QISDIVP--LAGLTKLQNLYLSKNHIS---- 191 (291)
T ss_dssp TTSCCCCCGGGGGCTTCCEEECCSSCCCCC-GGGGGCTTCSEEECCSS-CCCCCGG--GTTCTTCCEEECCSSCCC----
T ss_pred CCCcCCCChhhcCCCCCCEEEccCCcCCcc-hhhccCCCCCEEEccCC-ccccchh--hcCCCccCEEECCCCcCC----
Confidence 999999998899999999999999999988 57999999999999995 5787776 899999999999998764
Q ss_pred CCCCCChhhhcCCCCCCeEEeecCCCCCCC
Q 002313 368 GQSNASLGELKQLSRLTTLEVHIPDAQVMP 397 (937)
Q Consensus 368 ~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~ 397 (937)
.+..+..+++|+.|+++++.+...+
T Consensus 192 -----~l~~l~~l~~L~~L~l~~n~i~~~~ 216 (291)
T 1h6t_A 192 -----DLRALAGLKNLDVLELFSQECLNKP 216 (291)
T ss_dssp -----BCGGGTTCTTCSEEEEEEEEEECCC
T ss_pred -----CChhhccCCCCCEEECcCCcccCCc
Confidence 1345888999999999988765443
No 83
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.61 E-value=1.6e-15 Score=162.15 Aligned_cols=188 Identities=17% Similarity=0.179 Sum_probs=148.2
Q ss_pred ccCCCcEEEccCCCCccCCcc-c-CCCccceeeecCCcccccCChhhhcCCCCccEEEecCCcCcccCccccCCCCCCEE
Q 002313 208 IDEAPTAISIPFRGIYELPER-L-GFLKLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHSLPSSLGCLINLRTL 285 (937)
Q Consensus 208 ~~~~l~~l~l~~~~~~~l~~~-~-~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~lp~~i~~l~~Lr~L 285 (937)
..++++.|++++|.+..++.. + .+++|++|++.+|.+....+ |..+++|++|++++|.+..+|. .++|++|
T Consensus 32 ~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~---~~~l~~L~~L~Ls~n~l~~l~~----~~~L~~L 104 (317)
T 3o53_A 32 SAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD---LESLSTLRTLDLNNNYVQELLV----GPSIETL 104 (317)
T ss_dssp TGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE---ETTCTTCCEEECCSSEEEEEEE----CTTCCEE
T ss_pred cCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh---hhhcCCCCEEECcCCccccccC----CCCcCEE
Confidence 345799999999999988743 3 78999999999998764443 6899999999999999987763 3899999
Q ss_pred EccCCcccCcccccCCCCCcEEecccCcCcccCc-ccccCccCCEEEecCCCCCcccChhhh-cCCCCCcEEEcCCCccc
Q 002313 286 SLENCLVVDVAIIGDLKKLEILSLKHSSIEQLPR-EIGQLTCLKLLDLSNCSKLKEIRPNVI-SNLTRLEELYMGNSFTQ 363 (937)
Q Consensus 286 ~L~~~~~~~l~~i~~L~~L~~L~L~~~~l~~lp~-~i~~L~~L~~L~l~~~~~l~~lp~~~l-~~L~~L~~L~l~~~~~~ 363 (937)
++++|.+..+.. ..+++|++|++++|.++.+++ .++.+++|++|++++|. +..++...+ +.+++|++|++++|.+.
T Consensus 105 ~l~~n~l~~~~~-~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~~l~~L~~L~L~~N~l~ 182 (317)
T 3o53_A 105 HAANNNISRVSC-SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNE-IDTVNFAELAASSDTLEHLNLQYNFIY 182 (317)
T ss_dssp ECCSSCCSEEEE-CCCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSC-CCEEEGGGGGGGTTTCCEEECTTSCCC
T ss_pred ECCCCccCCcCc-cccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCC-CCcccHHHHhhccCcCCEEECCCCcCc
Confidence 999999876632 347889999999999998864 78899999999999954 666654434 57899999999998764
Q ss_pred ceecCCCCCChhhhcCCCCCCeEEeecCCCCCCCccc-cccccceeEEEec
Q 002313 364 WKVEGQSNASLGELKQLSRLTTLEVHIPDAQVMPQDL-VFVELERFRICIG 413 (937)
Q Consensus 364 ~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~-~~~~L~~l~l~~~ 413 (937)
. +.....+++|+.|+++++.+..++..+ ..++|+.+.+..+
T Consensus 183 ~---------~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~L~~N 224 (317)
T 3o53_A 183 D---------VKGQVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNN 224 (317)
T ss_dssp E---------EECCCCCTTCCEEECCSSCCCEECGGGGGGTTCSEEECTTS
T ss_pred c---------cccccccccCCEEECCCCcCCcchhhhcccCcccEEECcCC
Confidence 1 123335788999999999888777665 5677777776543
No 84
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.61 E-value=3.4e-16 Score=167.01 Aligned_cols=152 Identities=18% Similarity=0.223 Sum_probs=102.1
Q ss_pred CCccceeeecCCcccccCChhhhcCCCCccEEEecCCcCc--ccCcccc-------CCCCCCEEEccCCcccC-c-ccc-
Q 002313 231 FLKLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFH--SLPSSLG-------CLINLRTLSLENCLVVD-V-AII- 298 (937)
Q Consensus 231 ~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~--~lp~~i~-------~l~~Lr~L~L~~~~~~~-l-~~i- 298 (937)
.++|+.|++.+|.. .+|..+... |++|++++|.+. .+|..+. ++.+|++|++++|.+.. . ..+
T Consensus 42 ~~~L~~l~l~~n~l--~~p~~~~~~---L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~ 116 (312)
T 1wwl_A 42 GRSLEYLLKRVDTE--ADLGQFTDI---IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLL 116 (312)
T ss_dssp EEECTTHHHHCCTT--CCCHHHHHH---HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSS
T ss_pred CCCceeEeeccccc--ccHHHHHHH---HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHH
Confidence 45677777777766 667665432 777777777774 3565554 67788888888887763 2 333
Q ss_pred -cCCCCCcEEecccCcCcccCcccccC-----ccCCEEEecCCCCCcccChhhhcCCCCCcEEEcCCCcccceecCCCCC
Q 002313 299 -GDLKKLEILSLKHSSIEQLPREIGQL-----TCLKLLDLSNCSKLKEIRPNVISNLTRLEELYMGNSFTQWKVEGQSNA 372 (937)
Q Consensus 299 -~~L~~L~~L~L~~~~l~~lp~~i~~L-----~~L~~L~l~~~~~l~~lp~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~ 372 (937)
+.+++|++|++++|.++.+|..++.+ ++|++|++++|. +..+++..++++++|++|++++|.+. +. ..
T Consensus 117 ~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~~~~~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~Ls~N~l~----~~-~~ 190 (312)
T 1wwl_A 117 EATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAH-SLNFSCEQVRVFPALSTLDLSDNPEL----GE-RG 190 (312)
T ss_dssp SCCSCCCSEEEEESCBCSSSSSHHHHHHTTCCTTCCEEEEESCS-CCCCCTTTCCCCSSCCEEECCSCTTC----HH-HH
T ss_pred HhcCCCccEEEccCCCCcchhHHHHHHHHhhcCCCcEEEeeCCC-CccchHHHhccCCCCCEEECCCCCcC----cc-hH
Confidence 77888888888888877777777776 788888888744 66676555778888888888877532 00 00
Q ss_pred Chhhh--cCCCCCCeEEeecCCC
Q 002313 373 SLGEL--KQLSRLTTLEVHIPDA 393 (937)
Q Consensus 373 ~~~~l--~~l~~L~~L~l~~~~~ 393 (937)
.+..+ ..+++|+.|+++++.+
T Consensus 191 ~~~~~~~~~l~~L~~L~L~~N~l 213 (312)
T 1wwl_A 191 LISALCPLKFPTLQVLALRNAGM 213 (312)
T ss_dssp HHHHSCTTSCTTCCEEECTTSCC
T ss_pred HHHHHHhccCCCCCEEECCCCcC
Confidence 12233 6677777777776644
No 85
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.61 E-value=2.7e-15 Score=153.29 Aligned_cols=163 Identities=15% Similarity=0.227 Sum_probs=130.5
Q ss_pred CccCCcccCCCccceeeecCCcccccCChhhhcCCCCccEEEecCCc-CcccCc-cccCCCCCCEEEccC-CcccCc--c
Q 002313 222 IYELPERLGFLKLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFR-FHSLPS-SLGCLINLRTLSLEN-CLVVDV--A 296 (937)
Q Consensus 222 ~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~-~~~lp~-~i~~l~~Lr~L~L~~-~~~~~l--~ 296 (937)
+..+|. + ..++++|++.+|.+. .+|...|..+++|++|++++|. ++.+|. .|.++++|++|++++ |.++.+ .
T Consensus 23 l~~ip~-~-~~~l~~L~l~~n~l~-~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~ 99 (239)
T 2xwt_C 23 IQRIPS-L-PPSTQTLKLIETHLR-TIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPD 99 (239)
T ss_dssp CSSCCC-C-CTTCCEEEEESCCCS-EECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTT
T ss_pred ccccCC-C-CCcccEEEEeCCcce-EECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHH
Confidence 677777 3 458999999998754 5666668999999999999997 888865 789999999999998 888866 4
Q ss_pred cccCCCCCcEEecccCcCcccCcccccCccCC---EEEecCCCCCcccChhhhcCCCCCc-EEEcCCCcccceecCCCCC
Q 002313 297 IIGDLKKLEILSLKHSSIEQLPREIGQLTCLK---LLDLSNCSKLKEIRPNVISNLTRLE-ELYMGNSFTQWKVEGQSNA 372 (937)
Q Consensus 297 ~i~~L~~L~~L~L~~~~l~~lp~~i~~L~~L~---~L~l~~~~~l~~lp~~~l~~L~~L~-~L~l~~~~~~~~~~~~~~~ 372 (937)
.+.++++|++|++++|.++.+|. ++.+++|+ +|++++|..+..+|...++.+++|+ +|++++|.+. . .
T Consensus 100 ~f~~l~~L~~L~l~~n~l~~lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~-~------i 171 (239)
T 2xwt_C 100 ALKELPLLKFLGIFNTGLKMFPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFT-S------V 171 (239)
T ss_dssp SEECCTTCCEEEEEEECCCSCCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCC-E------E
T ss_pred HhCCCCCCCEEeCCCCCCccccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCc-c------c
Confidence 78899999999999999999987 88888888 9999997578999887789999999 9999888654 1 1
Q ss_pred ChhhhcCCCCCCeEEeecCC-CCCC
Q 002313 373 SLGELKQLSRLTTLEVHIPD-AQVM 396 (937)
Q Consensus 373 ~~~~l~~l~~L~~L~l~~~~-~~~~ 396 (937)
....+.. .+|+.|+++++. +..+
T Consensus 172 ~~~~~~~-~~L~~L~L~~n~~l~~i 195 (239)
T 2xwt_C 172 QGYAFNG-TKLDAVYLNKNKYLTVI 195 (239)
T ss_dssp CTTTTTT-CEEEEEECTTCTTCCEE
T ss_pred CHhhcCC-CCCCEEEcCCCCCcccC
Confidence 1122233 578888887773 5443
No 86
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.61 E-value=9.4e-15 Score=155.19 Aligned_cols=175 Identities=19% Similarity=0.302 Sum_probs=153.0
Q ss_pred hccCCCcEEEccCCCCccCCcccCCCccceeeecCCcccccCChhhhcCCCCccEEEecCCcCcccCccccCCCCCCEEE
Q 002313 207 KIDEAPTAISIPFRGIYELPERLGFLKLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHSLPSSLGCLINLRTLS 286 (937)
Q Consensus 207 ~~~~~l~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~lp~~i~~l~~Lr~L~ 286 (937)
....+++.|++++|.+..++....+++|++|++.+|... .++ .+..+++|++|++++|.+..+|. +..+++|++|+
T Consensus 60 ~~l~~L~~L~L~~n~i~~~~~~~~l~~L~~L~L~~n~l~-~~~--~~~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~ 135 (308)
T 1h6u_A 60 QYLNNLIGLELKDNQITDLAPLKNLTKITELELSGNPLK-NVS--AIAGLQSIKTLDLTSTQITDVTP-LAGLSNLQVLY 135 (308)
T ss_dssp GGCTTCCEEECCSSCCCCCGGGTTCCSCCEEECCSCCCS-CCG--GGTTCTTCCEEECTTSCCCCCGG-GTTCTTCCEEE
T ss_pred hccCCCCEEEccCCcCCCChhHccCCCCCEEEccCCcCC-Cch--hhcCCCCCCEEECCCCCCCCchh-hcCCCCCCEEE
Confidence 457889999999999999888447999999999999854 454 27899999999999999998875 99999999999
Q ss_pred ccCCcccCcccccCCCCCcEEecccCcCcccCcccccCccCCEEEecCCCCCcccChhhhcCCCCCcEEEcCCCccccee
Q 002313 287 LENCLVVDVAIIGDLKKLEILSLKHSSIEQLPREIGQLTCLKLLDLSNCSKLKEIRPNVISNLTRLEELYMGNSFTQWKV 366 (937)
Q Consensus 287 L~~~~~~~l~~i~~L~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~l~~L~~L~~L~l~~~~~~~~~ 366 (937)
+++|.+..++.++.+++|++|++++|.++.+|. +..+++|++|++++| .+..++. ++.+++|++|++++|.+.
T Consensus 136 l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n-~l~~~~~--l~~l~~L~~L~L~~N~l~--- 208 (308)
T 1h6u_A 136 LDLNQITNISPLAGLTNLQYLSIGNAQVSDLTP-LANLSKLTTLKADDN-KISDISP--LASLPNLIEVHLKNNQIS--- 208 (308)
T ss_dssp CCSSCCCCCGGGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSS-CCCCCGG--GGGCTTCCEEECTTSCCC---
T ss_pred CCCCccCcCccccCCCCccEEEccCCcCCCChh-hcCCCCCCEEECCCC-ccCcChh--hcCCCCCCEEEccCCccC---
Confidence 999999988779999999999999999999887 999999999999995 5888876 899999999999999765
Q ss_pred cCCCCCChhhhcCCCCCCeEEeecCCCCCCCc
Q 002313 367 EGQSNASLGELKQLSRLTTLEVHIPDAQVMPQ 398 (937)
Q Consensus 367 ~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~ 398 (937)
+ +..+..+++|+.|+++++.+...+.
T Consensus 209 -~-----~~~l~~l~~L~~L~l~~N~i~~~~~ 234 (308)
T 1h6u_A 209 -D-----VSPLANTSNLFIVTLTNQTITNQPV 234 (308)
T ss_dssp -B-----CGGGTTCTTCCEEEEEEEEEECCCE
T ss_pred -c-----cccccCCCCCCEEEccCCeeecCCe
Confidence 1 1248889999999999987765543
No 87
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.60 E-value=1.2e-14 Score=149.72 Aligned_cols=164 Identities=22% Similarity=0.339 Sum_probs=142.7
Q ss_pred cCcchhhhhhccCCCcEEEccCCCCccCCcc-c-CCCccceeeecCCcccccCChhhhcCCCCccEEEecCCcCcccC-c
Q 002313 198 VADLKEELDKIDEAPTAISIPFRGIYELPER-L-GFLKLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHSLP-S 274 (937)
Q Consensus 198 ~~~~~~~~~~~~~~l~~l~l~~~~~~~l~~~-~-~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~lp-~ 274 (937)
+..+..+|......++.|+++++.+..++.. + .+++|++|++.+|.+.. ++...|..+++|++|++++|.+..+| .
T Consensus 23 ~~~l~~~p~~~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~L~~n~l~~~~~~ 101 (251)
T 3m19_A 23 GKSLDSVPSGIPADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQT-LSAGVFDDLTELGTLGLANNQLASLPLG 101 (251)
T ss_dssp TCCCSSCCSCCCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCC-CCTTTTTTCTTCCEEECTTSCCCCCCTT
T ss_pred CCCccccCCCCCCCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCc-cCHhHhccCCcCCEEECCCCcccccChh
Confidence 3456666777778999999999999988764 3 68999999999987654 55566799999999999999999886 5
Q ss_pred cccCCCCCCEEEccCCcccCc--ccccCCCCCcEEecccCcCcccCc-ccccCccCCEEEecCCCCCcccChhhhcCCCC
Q 002313 275 SLGCLINLRTLSLENCLVVDV--AIIGDLKKLEILSLKHSSIEQLPR-EIGQLTCLKLLDLSNCSKLKEIRPNVISNLTR 351 (937)
Q Consensus 275 ~i~~l~~Lr~L~L~~~~~~~l--~~i~~L~~L~~L~L~~~~l~~lp~-~i~~L~~L~~L~l~~~~~l~~lp~~~l~~L~~ 351 (937)
.|..+++|++|++++|.++.+ ..++.+.+|++|++++|.++.+|. .++.+++|++|++++| .+..+++..+..+++
T Consensus 102 ~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~ 180 (251)
T 3m19_A 102 VFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTN-QLQSVPHGAFDRLGK 180 (251)
T ss_dssp TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTT
T ss_pred HhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCC-cCCccCHHHHhCCCC
Confidence 578999999999999999987 347999999999999999999987 6899999999999995 588888877899999
Q ss_pred CcEEEcCCCccc
Q 002313 352 LEELYMGNSFTQ 363 (937)
Q Consensus 352 L~~L~l~~~~~~ 363 (937)
|++|++++|.+.
T Consensus 181 L~~L~l~~N~~~ 192 (251)
T 3m19_A 181 LQTITLFGNQFD 192 (251)
T ss_dssp CCEEECCSCCBC
T ss_pred CCEEEeeCCcee
Confidence 999999999764
No 88
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.59 E-value=4.1e-15 Score=168.54 Aligned_cols=149 Identities=20% Similarity=0.163 Sum_probs=90.8
Q ss_pred CCccceeeecCCcccccCChhhhcCCCCccEEEecCCcCcccCccccCCCCCCEEEccCCcccCcccccCCCCCcEEecc
Q 002313 231 FLKLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHSLPSSLGCLINLRTLSLENCLVVDVAIIGDLKKLEILSLK 310 (937)
Q Consensus 231 ~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~lp~~i~~l~~Lr~L~L~~~~~~~l~~i~~L~~L~~L~L~ 310 (937)
+++|++|++++|.+.. +++..|+.+++|++|+|++|.+...++ ++.+++|++|++++|.+..++ ..++|++|+++
T Consensus 33 ~~~L~~L~Ls~n~l~~-~~~~~~~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~l~~l~---~~~~L~~L~L~ 107 (487)
T 3oja_A 33 AWNVKELDLSGNPLSQ-ISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNYVQELL---VGPSIETLHAA 107 (487)
T ss_dssp GGGCCEEECCSSCCCC-CCGGGGTTCTTCCEEECTTSCCEEEEE-CTTCTTCCEEECCSSEEEEEE---ECTTCCEEECC
T ss_pred CCCccEEEeeCCcCCC-CCHHHHhCCCCCCEEEeeCCCCCCCcc-cccCCCCCEEEecCCcCCCCC---CCCCcCEEECc
Confidence 3466777776665443 333445677777777777777765544 667777777777777655442 22667777777
Q ss_pred cCcCcccCcccccCccCCEEEecCCCCCcccChhhhcCCCCCcEEEcCCCcccceecCCCCCChhhhc-CCCCCCeEEee
Q 002313 311 HSSIEQLPREIGQLTCLKLLDLSNCSKLKEIRPNVISNLTRLEELYMGNSFTQWKVEGQSNASLGELK-QLSRLTTLEVH 389 (937)
Q Consensus 311 ~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~l~-~l~~L~~L~l~ 389 (937)
+|.+..+|.. .+++|++|++++|. +..+++..++.+++|++|++++|.+. ...+..+. .+++|+.|+++
T Consensus 108 ~N~l~~~~~~--~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~Ls~N~l~-------~~~~~~l~~~l~~L~~L~Ls 177 (487)
T 3oja_A 108 NNNISRVSCS--RGQGKKNIYLANNK-ITMLRDLDEGCRSRVQYLDLKLNEID-------TVNFAELAASSDTLEHLNLQ 177 (487)
T ss_dssp SSCCCCEEEC--CCSSCEEEECCSSC-CCSGGGBCGGGGSSEEEEECTTSCCC-------EEEGGGGGGGTTTCCEEECT
T ss_pred CCcCCCCCcc--ccCCCCEEECCCCC-CCCCCchhhcCCCCCCEEECCCCCCC-------CcChHHHhhhCCcccEEecC
Confidence 7777666542 45667777777643 55554444666777777777766554 12233333 45667777776
Q ss_pred cCCCC
Q 002313 390 IPDAQ 394 (937)
Q Consensus 390 ~~~~~ 394 (937)
+|.+.
T Consensus 178 ~N~l~ 182 (487)
T 3oja_A 178 YNFIY 182 (487)
T ss_dssp TSCCC
T ss_pred CCccc
Confidence 66543
No 89
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.58 E-value=5.2e-15 Score=154.34 Aligned_cols=188 Identities=19% Similarity=0.314 Sum_probs=151.1
Q ss_pred cEEEccCCCCccCCcccCCCccceeeecCCcccccCChhhhcCCCCccEEEecCCcCcccCccccCCCCCCEEEccCCcc
Q 002313 213 TAISIPFRGIYELPERLGFLKLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHSLPSSLGCLINLRTLSLENCLV 292 (937)
Q Consensus 213 ~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~lp~~i~~l~~Lr~L~L~~~~~ 292 (937)
..+++..+.+..+.....+++|+.|.+.++... .++. +..+++|++|++++|.+..++ .++.+++|++|++++|.+
T Consensus 22 ~~l~l~~~~~~~~~~~~~l~~L~~L~l~~~~i~-~~~~--l~~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~L~~n~l 97 (272)
T 3rfs_A 22 IKANLKKKSVTDAVTQNELNSIDQIIANNSDIK-SVQG--IQYLPNVRYLALGGNKLHDIS-ALKELTNLTYLILTGNQL 97 (272)
T ss_dssp HHHHHTCSCTTSEECHHHHTTCCEEECTTSCCC-CCTT--GGGCTTCCEEECTTSCCCCCG-GGTTCTTCCEEECTTSCC
T ss_pred HHHHhcCcccccccccccccceeeeeeCCCCcc-cccc--cccCCCCcEEECCCCCCCCch-hhcCCCCCCEEECCCCcc
Confidence 344444455554444446889999999988743 4443 688999999999999998875 789999999999999999
Q ss_pred cCc--ccccCCCCCcEEecccCcCcccCcc-cccCccCCEEEecCCCCCcccChhhhcCCCCCcEEEcCCCcccceecCC
Q 002313 293 VDV--AIIGDLKKLEILSLKHSSIEQLPRE-IGQLTCLKLLDLSNCSKLKEIRPNVISNLTRLEELYMGNSFTQWKVEGQ 369 (937)
Q Consensus 293 ~~l--~~i~~L~~L~~L~L~~~~l~~lp~~-i~~L~~L~~L~l~~~~~l~~lp~~~l~~L~~L~~L~l~~~~~~~~~~~~ 369 (937)
+.+ ..++++++|++|++++|.++.+|.. ++++++|++|++++| .+..+++..++.+++|++|++++|.+.
T Consensus 98 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~------ 170 (272)
T 3rfs_A 98 QSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHN-QLQSLPKGVFDKLTNLTELDLSYNQLQ------ 170 (272)
T ss_dssp CCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCC------
T ss_pred CccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCC-ccCccCHHHhccCccCCEEECCCCCcC------
Confidence 877 4489999999999999999988865 799999999999996 588888877899999999999999765
Q ss_pred CCCChhhhcCCCCCCeEEeecCCCCCCCccc--cccccceeEEEe
Q 002313 370 SNASLGELKQLSRLTTLEVHIPDAQVMPQDL--VFVELERFRICI 412 (937)
Q Consensus 370 ~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~--~~~~L~~l~l~~ 412 (937)
......+..+++|+.|+++++.+..++... ..++|+.+.+.+
T Consensus 171 -~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~ 214 (272)
T 3rfs_A 171 -SLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHD 214 (272)
T ss_dssp -CCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCS
T ss_pred -ccCHHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccC
Confidence 233345678899999999999888776643 466677766543
No 90
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.56 E-value=9.4e-15 Score=165.55 Aligned_cols=187 Identities=17% Similarity=0.199 Sum_probs=151.1
Q ss_pred cCCCcEEEccCCCCccCCc-cc-CCCccceeeecCCcccccCChhhhcCCCCccEEEecCCcCcccCccccCCCCCCEEE
Q 002313 209 DEAPTAISIPFRGIYELPE-RL-GFLKLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHSLPSSLGCLINLRTLS 286 (937)
Q Consensus 209 ~~~l~~l~l~~~~~~~l~~-~~-~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~lp~~i~~l~~Lr~L~ 286 (937)
..+++.|++++|.+..+++ .+ .+++|++|++++|.+....| |..+++|++|+|++|.+..+|.. ++|++|+
T Consensus 33 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~---l~~l~~L~~L~Ls~N~l~~l~~~----~~L~~L~ 105 (487)
T 3oja_A 33 AWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD---LESLSTLRTLDLNNNYVQELLVG----PSIETLH 105 (487)
T ss_dssp GGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE---CTTCTTCCEEECCSSEEEEEEEC----TTCCEEE
T ss_pred CCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc---cccCCCCCEEEecCCcCCCCCCC----CCcCEEE
Confidence 3479999999999998864 44 78999999999998765444 78999999999999999987643 8999999
Q ss_pred ccCCcccCcccccCCCCCcEEecccCcCccc-CcccccCccCCEEEecCCCCCcccChhhhc-CCCCCcEEEcCCCcccc
Q 002313 287 LENCLVVDVAIIGDLKKLEILSLKHSSIEQL-PREIGQLTCLKLLDLSNCSKLKEIRPNVIS-NLTRLEELYMGNSFTQW 364 (937)
Q Consensus 287 L~~~~~~~l~~i~~L~~L~~L~L~~~~l~~l-p~~i~~L~~L~~L~l~~~~~l~~lp~~~l~-~L~~L~~L~l~~~~~~~ 364 (937)
+++|.+..+.. ..+++|++|++++|.++.+ |..++++++|++|++++|. +..+++..+. .+++|++|++++|.+.
T Consensus 106 L~~N~l~~~~~-~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~l~~~l~~L~~L~Ls~N~l~- 182 (487)
T 3oja_A 106 AANNNISRVSC-SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNE-IDTVNFAELAASSDTLEHLNLQYNFIY- 182 (487)
T ss_dssp CCSSCCCCEEE-CCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSC-CCEEEGGGGGGGTTTCCEEECTTSCCC-
T ss_pred CcCCcCCCCCc-cccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCC-CCCcChHHHhhhCCcccEEecCCCccc-
Confidence 99999887732 3578999999999999977 4578999999999999965 6654444354 8999999999999765
Q ss_pred eecCCCCCChhhhcCCCCCCeEEeecCCCCCCCccc-cccccceeEEEec
Q 002313 365 KVEGQSNASLGELKQLSRLTTLEVHIPDAQVMPQDL-VFVELERFRICIG 413 (937)
Q Consensus 365 ~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~-~~~~L~~l~l~~~ 413 (937)
+ +.....+++|+.|++++|.+..++..+ ..++|+.|.+..+
T Consensus 183 ---~-----~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~Ls~N 224 (487)
T 3oja_A 183 ---D-----VKGQVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNN 224 (487)
T ss_dssp ---E-----EECCCCCTTCCEEECCSSCCCEECGGGGGGTTCSEEECTTS
T ss_pred ---c-----ccccccCCCCCEEECCCCCCCCCCHhHcCCCCccEEEecCC
Confidence 1 133446889999999999988877765 5677777776543
No 91
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.56 E-value=9.7e-15 Score=153.59 Aligned_cols=181 Identities=21% Similarity=0.275 Sum_probs=150.0
Q ss_pred EccCCCCccCCcccCCCccceeeecCCcccccCChhhhcCCCCccEEEecCCcCcccCccccCCCCCCEEEccCCcccCc
Q 002313 216 SIPFRGIYELPERLGFLKLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHSLPSSLGCLINLRTLSLENCLVVDV 295 (937)
Q Consensus 216 ~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~lp~~i~~l~~Lr~L~L~~~~~~~l 295 (937)
.+....+..+.....+++|++|++.+|... .++. +..+++|++|++++|.+..++. +.++++|++|++++|.+..+
T Consensus 30 ~l~~~~~~~~~~~~~l~~L~~L~l~~~~i~-~~~~--~~~l~~L~~L~L~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~ 105 (291)
T 1h6t_A 30 NLKKKSVTDAVTQNELNSIDQIIANNSDIK-SVQG--IQYLPNVTKLFLNGNKLTDIKP-LANLKNLGWLFLDENKVKDL 105 (291)
T ss_dssp HTTCSCTTSEECHHHHHTCCEEECTTSCCC-CCTT--GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCG
T ss_pred HhcCCCcccccchhhcCcccEEEccCCCcc-cChh--HhcCCCCCEEEccCCccCCCcc-cccCCCCCEEECCCCcCCCC
Confidence 344444544444446889999999988754 4554 6889999999999999999877 99999999999999999999
Q ss_pred ccccCCCCCcEEecccCcCcccCcccccCccCCEEEecCCCCCcccChhhhcCCCCCcEEEcCCCcccceecCCCCCChh
Q 002313 296 AIIGDLKKLEILSLKHSSIEQLPREIGQLTCLKLLDLSNCSKLKEIRPNVISNLTRLEELYMGNSFTQWKVEGQSNASLG 375 (937)
Q Consensus 296 ~~i~~L~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~ 375 (937)
+.++.+++|++|++++|.++.++ .++.+++|++|++++| .+..++. ++.+++|++|++++|.+. .. .
T Consensus 106 ~~l~~l~~L~~L~L~~n~i~~~~-~l~~l~~L~~L~l~~n-~l~~~~~--l~~l~~L~~L~L~~N~l~--------~~-~ 172 (291)
T 1h6t_A 106 SSLKDLKKLKSLSLEHNGISDIN-GLVHLPQLESLYLGNN-KITDITV--LSRLTKLDTLSLEDNQIS--------DI-V 172 (291)
T ss_dssp GGGTTCTTCCEEECTTSCCCCCG-GGGGCTTCCEEECCSS-CCCCCGG--GGGCTTCSEEECCSSCCC--------CC-G
T ss_pred hhhccCCCCCEEECCCCcCCCCh-hhcCCCCCCEEEccCC-cCCcchh--hccCCCCCEEEccCCccc--------cc-h
Confidence 88999999999999999999885 6999999999999995 4777743 899999999999999764 11 2
Q ss_pred hhcCCCCCCeEEeecCCCCCCCccccccccceeEEEec
Q 002313 376 ELKQLSRLTTLEVHIPDAQVMPQDLVFVELERFRICIG 413 (937)
Q Consensus 376 ~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~l~l~~~ 413 (937)
.+..+++|+.|+++++.+..++.-..+++|+.|.+.++
T Consensus 173 ~l~~l~~L~~L~L~~N~i~~l~~l~~l~~L~~L~l~~n 210 (291)
T 1h6t_A 173 PLAGLTKLQNLYLSKNHISDLRALAGLKNLDVLELFSQ 210 (291)
T ss_dssp GGTTCTTCCEEECCSSCCCBCGGGTTCTTCSEEEEEEE
T ss_pred hhcCCCccCEEECCCCcCCCChhhccCCCCCEEECcCC
Confidence 28889999999999999888765446778888887654
No 92
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.55 E-value=6e-14 Score=141.79 Aligned_cols=149 Identities=21% Similarity=0.317 Sum_probs=126.8
Q ss_pred CcEEEccCCCCccCCcccCCCccceeeecCCcccccCChhhhcCCCCccEEEecCCcCcccCc-cccCCCCCCEEEccCC
Q 002313 212 PTAISIPFRGIYELPERLGFLKLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHSLPS-SLGCLINLRTLSLENC 290 (937)
Q Consensus 212 l~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~lp~-~i~~l~~Lr~L~L~~~ 290 (937)
...++.+++.+..+|..+. ++|++|++.+|.+....| ..|..+++|++|+|++|.+..+|. .|..+++|++|++++|
T Consensus 21 ~~~v~c~~~~l~~ip~~~~-~~L~~L~Ls~n~i~~~~~-~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N 98 (229)
T 3e6j_A 21 GTTVDCRSKRHASVPAGIP-TNAQILYLHDNQITKLEP-GVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTN 98 (229)
T ss_dssp TTEEECTTSCCSSCCSCCC-TTCSEEECCSSCCCCCCT-TTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CCEeEccCCCcCccCCCCC-CCCCEEEcCCCccCccCH-HHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCC
Confidence 3568888888888887664 889999999988765444 457899999999999999998864 4689999999999999
Q ss_pred cccCc--ccccCCCCCcEEecccCcCcccCcccccCccCCEEEecCCCCCcccChhhhcCCCCCcEEEcCCCccc
Q 002313 291 LVVDV--AIIGDLKKLEILSLKHSSIEQLPREIGQLTCLKLLDLSNCSKLKEIRPNVISNLTRLEELYMGNSFTQ 363 (937)
Q Consensus 291 ~~~~l--~~i~~L~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~l~~L~~L~~L~l~~~~~~ 363 (937)
.++.+ ..+..+.+|++|++++|.++.+|..+..+++|++|++++| .+..++...+..+++|++|++.+|.+.
T Consensus 99 ~l~~l~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N~~~ 172 (229)
T 3e6j_A 99 QLTVLPSAVFDRLVHLKELFMCCNKLTELPRGIERLTHLTHLALDQN-QLKSIPHGAFDRLSSLTHAYLFGNPWD 172 (229)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCCSCCTTGGGCTTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECTTSCBC
T ss_pred cCCccChhHhCcchhhCeEeccCCcccccCcccccCCCCCEEECCCC-cCCccCHHHHhCCCCCCEEEeeCCCcc
Confidence 99877 4478999999999999999999999999999999999985 588888777889999999999988654
No 93
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.55 E-value=4.2e-14 Score=141.83 Aligned_cols=149 Identities=14% Similarity=0.252 Sum_probs=120.9
Q ss_pred cEEEccCCCCccCCcccCCCccceeeecCCcccccCChhhhcCCCCccEEEecCCcCcccCc-cccCCCCCCEEEccCCc
Q 002313 213 TAISIPFRGIYELPERLGFLKLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHSLPS-SLGCLINLRTLSLENCL 291 (937)
Q Consensus 213 ~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~lp~-~i~~l~~Lr~L~L~~~~ 291 (937)
+.++++++.+..+|..+ ...+++|++.+|.+....+..+|..+++|++|++++|.++.++. .|..+.+|++|++++|.
T Consensus 14 ~~l~~s~n~l~~iP~~~-~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~ 92 (220)
T 2v70_A 14 TTVDCSNQKLNKIPEHI-PQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNR 92 (220)
T ss_dssp TEEECCSSCCSSCCSCC-CTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred CEeEeCCCCcccCccCC-CCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCc
Confidence 57888888888888765 34678889888887655566667889999999999999888754 78889999999999998
Q ss_pred ccCc--ccccCCCCCcEEecccCcCccc-CcccccCccCCEEEecCCCCCcccChhhhcCCCCCcEEEcCCCccc
Q 002313 292 VVDV--AIIGDLKKLEILSLKHSSIEQL-PREIGQLTCLKLLDLSNCSKLKEIRPNVISNLTRLEELYMGNSFTQ 363 (937)
Q Consensus 292 ~~~l--~~i~~L~~L~~L~L~~~~l~~l-p~~i~~L~~L~~L~l~~~~~l~~lp~~~l~~L~~L~~L~l~~~~~~ 363 (937)
++.+ ..++.+++|++|++++|.++.+ |..+..+++|++|++++| .+..+++..++.+++|++|++++|.+.
T Consensus 93 l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N~l~ 166 (220)
T 2v70_A 93 LENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDN-QITTVAPGAFDTLHSLSTLNLLANPFN 166 (220)
T ss_dssp CCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTS-CCCCBCTTTTTTCTTCCEEECCSCCEE
T ss_pred cCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCC-cCCEECHHHhcCCCCCCEEEecCcCCc
Confidence 8876 4588899999999999988877 467888899999999884 477776666888888999988888654
No 94
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=99.54 E-value=1.2e-14 Score=169.93 Aligned_cols=164 Identities=18% Similarity=0.288 Sum_probs=130.7
Q ss_pred CcccC---CCCCHHHHHHHHHHHhCCCCCCCchhHHHHHHHHhcCCCchHHHHHHHHhcCCChhHHHHHHHHhhcCCCCC
Q 002313 8 EDFLD---WLLSNEEASHLFEKIVGHSAKKSDFETIGVEIVAKCGGLPIAIKTIANALKNKSPRIWKDAVNQLSNSNPRK 84 (937)
Q Consensus 8 ~~~~l---~~L~~~~~~~lf~~~~~~~~~~~~~~~i~~~i~~kc~GlPLai~~ig~~L~~~~~~~W~~~l~~l~~~~~~~ 84 (937)
..|++ ++|+++|+++||...++.. .+...+.+++|+++|+|+||||+.+|+.|+.+. ..|+.+++.+.......
T Consensus 276 ~~~~v~~l~~L~~~ea~~L~~~~~~~~--~~~~~~~~~~i~~~~~G~PLal~~~a~~l~~~~-~~w~~~l~~l~~~~~~~ 352 (591)
T 1z6t_A 276 PKYVVPVESSLGKEKGLEILSLFVNMK--KADLPEQAHSIIKECKGSPLVVSLIGALLRDFP-NRWEYYLKQLQNKQFKR 352 (591)
T ss_dssp CEEEEECCSSCCHHHHHHHHHHHHTSC--GGGSCTHHHHHHHHHTTCHHHHHHHHHHHHHST-TCHHHHHHHHHSCCCCC
T ss_pred CceEeecCCCCCHHHHHHHHHHHhCCC--cccccHHHHHHHHHhCCCcHHHHHHHHHHhcCc-hhHHHHHHHHHHhHHHH
Confidence 45555 5899999999999999642 234457899999999999999999999998773 47999999987654332
Q ss_pred ccc-----cccccccccccccccCchhHHHHHHHhcCCCCCCcccHHHHHHHHhhcccccCcchHHHHHHHHHHHHHHHh
Q 002313 85 IQG-----MDADLSSIELSYEFLKCKEVKSLFQLCGLLKDGSRIAVDDLLRYVMGLRLLTNADTLEAARNRVHTLIDNLK 159 (937)
Q Consensus 85 ~~~-----~~~~~~~l~~sY~~L~~~~lk~cfl~~~~fp~~~~i~~~~li~~w~a~g~~~~~~~~~~~~~~~~~~~~~L~ 159 (937)
+.. ......++..||+.||.+ .|.||+++|+||+|+.|+.+.++..|.+++ ++ ..+++++|+
T Consensus 353 ~~~~~~~~~~~l~~~l~~s~~~L~~~-~~~~l~~la~f~~~~~i~~~~l~~l~~~~~--------~~----~~~~l~~L~ 419 (591)
T 1z6t_A 353 IRKSSSYDYEALDEAMSISVEMLRED-IKDYYTDLSILQKDVKVPTKVLCILWDMET--------EE----VEDILQEFV 419 (591)
T ss_dssp SSCCCSSCCHHHHHHHHHHHHTSCTT-THHHHHHGGGCCTTCCEEHHHHHHHHTCCH--------HH----HHHHHHHHH
T ss_pred hhhccccchHHHHHHHHHHHHhCCHH-HHHHHHHccccCCCCccCHHHHHHHhccCH--------HH----HHHHHHHHH
Confidence 221 112277899999999998 899999999999999999999999997651 22 345789999
Q ss_pred hccccccc--CCCCceeeehhhHHHHHHHH
Q 002313 160 SASLLFDG--DSEDHAKMHRIIHAIAVSIA 187 (937)
Q Consensus 160 ~~~~~~~~--~~~~~~~mhd~i~~la~~~~ 187 (937)
++++++.. +....|+||+++|+++....
T Consensus 420 ~~~Ll~~~~~~~~~~~~~H~lv~~~~~~~~ 449 (591)
T 1z6t_A 420 NKSLLFCDRNGKSFRYYLHDLQVDFLTEKN 449 (591)
T ss_dssp HTTSSEEEEETTEEEEECCHHHHHHHHHHT
T ss_pred hCcCeEEecCCCccEEEEcHHHHHHHHhhh
Confidence 99999754 23347999999999998773
No 95
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.54 E-value=3.7e-14 Score=163.69 Aligned_cols=173 Identities=24% Similarity=0.308 Sum_probs=149.4
Q ss_pred ccCCCcEEEccCCCCccCCcccCCCccceeeecCCcccccCChhhhcCCCCccEEEecCCcCcccCccccCCCCCCEEEc
Q 002313 208 IDEAPTAISIPFRGIYELPERLGFLKLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHSLPSSLGCLINLRTLSL 287 (937)
Q Consensus 208 ~~~~l~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~lp~~i~~l~~Lr~L~L 287 (937)
.+..++.|+++++.+..++....+++|+.|++++|.+.. ++. +..+++|+.|+|++|.+..+| .+..+++|++|+|
T Consensus 41 ~L~~L~~L~l~~n~i~~l~~l~~l~~L~~L~Ls~N~l~~-~~~--l~~l~~L~~L~Ls~N~l~~l~-~l~~l~~L~~L~L 116 (605)
T 1m9s_A 41 ELNSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTD-IKP--LTNLKNLGWLFLDENKIKDLS-SLKDLKKLKSLSL 116 (605)
T ss_dssp HHTTCCCCBCTTCCCCCCTTGGGCTTCCEEECTTSCCCC-CGG--GGGCTTCCEEECCSSCCCCCT-TSTTCTTCCEEEC
T ss_pred cCCCCCEEECcCCCCCCChHHccCCCCCEEEeeCCCCCC-Chh--hccCCCCCEEECcCCCCCCCh-hhccCCCCCEEEe
Confidence 466799999999999998865589999999999987654 444 689999999999999999877 6999999999999
Q ss_pred cCCcccCcccccCCCCCcEEecccCcCcccCcccccCccCCEEEecCCCCCcccChhhhcCCCCCcEEEcCCCcccceec
Q 002313 288 ENCLVVDVAIIGDLKKLEILSLKHSSIEQLPREIGQLTCLKLLDLSNCSKLKEIRPNVISNLTRLEELYMGNSFTQWKVE 367 (937)
Q Consensus 288 ~~~~~~~l~~i~~L~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~l~~L~~L~~L~l~~~~~~~~~~ 367 (937)
++|.+..++.+..+++|++|+|++|.+..+ ..++.+++|++|++++| .+..+++ ++.+++|++|++++|.+.
T Consensus 117 s~N~l~~l~~l~~l~~L~~L~Ls~N~l~~l-~~l~~l~~L~~L~Ls~N-~l~~~~~--l~~l~~L~~L~Ls~N~i~---- 188 (605)
T 1m9s_A 117 EHNGISDINGLVHLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLEDN-QISDIVP--LAGLTKLQNLYLSKNHIS---- 188 (605)
T ss_dssp TTSCCCCCGGGGGCTTCSEEECCSSCCCCC-GGGGSCTTCSEEECCSS-CCCCCGG--GTTCTTCCEEECCSSCCC----
T ss_pred cCCCCCCCccccCCCccCEEECCCCccCCc-hhhcccCCCCEEECcCC-cCCCchh--hccCCCCCEEECcCCCCC----
Confidence 999999998899999999999999999988 57999999999999996 4777766 899999999999999764
Q ss_pred CCCCCChhhhcCCCCCCeEEeecCCCCCCC
Q 002313 368 GQSNASLGELKQLSRLTTLEVHIPDAQVMP 397 (937)
Q Consensus 368 ~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~ 397 (937)
.+..+..+++|+.|+++++.+...|
T Consensus 189 -----~l~~l~~l~~L~~L~L~~N~l~~~p 213 (605)
T 1m9s_A 189 -----DLRALAGLKNLDVLELFSQECLNKP 213 (605)
T ss_dssp -----BCGGGTTCTTCSEEECCSEEEECCC
T ss_pred -----CChHHccCCCCCEEEccCCcCcCCc
Confidence 1356888999999999988765544
No 96
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.53 E-value=3.5e-14 Score=154.04 Aligned_cols=146 Identities=16% Similarity=0.196 Sum_probs=67.9
Q ss_pred EEccCCCCccCCcccCCCccceeeecCCcccccCChhhhcCCCCccEEEecCCcCc-ccC-ccccCCCCCCE-EEccCCc
Q 002313 215 ISIPFRGIYELPERLGFLKLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFH-SLP-SSLGCLINLRT-LSLENCL 291 (937)
Q Consensus 215 l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~-~lp-~~i~~l~~Lr~-L~L~~~~ 291 (937)
++-+++++..+|..+ .+++++|++.+|.+ ..+|...|+++++|++|+|++|.+. .+| ..|.++++|+. +.+.+|+
T Consensus 14 v~C~~~~Lt~iP~~l-~~~l~~L~Ls~N~i-~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~ 91 (350)
T 4ay9_X 14 FLCQESKVTEIPSDL-PRNAIELRFVLTKL-RVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANN 91 (350)
T ss_dssp EEEESTTCCSCCTTC-CTTCSEEEEESCCC-SEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETT
T ss_pred EEecCCCCCccCcCc-CCCCCEEEccCCcC-CCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCc
Confidence 344444444454443 23455555555443 2444444555555555555555542 233 23445554443 3333444
Q ss_pred ccCc--ccccCCCCCcEEecccCcCcccCc-ccccCccCCEEEecCCCCCcccChhhhcCCC-CCcEEEcCCCcc
Q 002313 292 VVDV--AIIGDLKKLEILSLKHSSIEQLPR-EIGQLTCLKLLDLSNCSKLKEIRPNVISNLT-RLEELYMGNSFT 362 (937)
Q Consensus 292 ~~~l--~~i~~L~~L~~L~L~~~~l~~lp~-~i~~L~~L~~L~l~~~~~l~~lp~~~l~~L~-~L~~L~l~~~~~ 362 (937)
+..+ ..+..+++|++|++++|.+..+|. .+....++.+|++.++..+..++...+..+. .++.|++++|.+
T Consensus 92 l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i 166 (350)
T 4ay9_X 92 LLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGI 166 (350)
T ss_dssp CCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCC
T ss_pred ccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccc
Confidence 4433 344555555555555555554443 2333444455555544445555544333332 355555555543
No 97
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.53 E-value=7.2e-14 Score=140.17 Aligned_cols=148 Identities=22% Similarity=0.330 Sum_probs=118.5
Q ss_pred cEEEccCCCCccCCcccCCCccceeeecCCcccccCChhhhcCCCCccEEEecCCcCccc-CccccCCCCCCEEEccCCc
Q 002313 213 TAISIPFRGIYELPERLGFLKLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHSL-PSSLGCLINLRTLSLENCL 291 (937)
Q Consensus 213 ~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~l-p~~i~~l~~Lr~L~L~~~~ 291 (937)
+.++.+++.+..+|..+. ++++.|++.+|.+. .++...|..+++|++|+|++|.+..+ |..|..+++|++|++++|.
T Consensus 14 ~~v~c~~~~l~~iP~~l~-~~l~~L~l~~n~i~-~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~ 91 (220)
T 2v9t_B 14 NIVDCRGKGLTEIPTNLP-ETITEIRLEQNTIK-VIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNK 91 (220)
T ss_dssp TEEECTTSCCSSCCSSCC-TTCCEEECCSSCCC-EECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSC
T ss_pred CEEEcCCCCcCcCCCccC-cCCCEEECCCCcCC-CcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCc
Confidence 567778888888887664 67888888888754 45555578888999999999988877 7788888999999999988
Q ss_pred ccCc--ccccCCCCCcEEecccCcCcccC-cccccCccCCEEEecCCCCCcccChhhhcCCCCCcEEEcCCCccc
Q 002313 292 VVDV--AIIGDLKKLEILSLKHSSIEQLP-REIGQLTCLKLLDLSNCSKLKEIRPNVISNLTRLEELYMGNSFTQ 363 (937)
Q Consensus 292 ~~~l--~~i~~L~~L~~L~L~~~~l~~lp-~~i~~L~~L~~L~l~~~~~l~~lp~~~l~~L~~L~~L~l~~~~~~ 363 (937)
++.+ ..+..+++|++|++++|.++.++ ..+..+++|++|++++| .+..++.+.++.+++|++|++++|.+.
T Consensus 92 l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N~~~ 165 (220)
T 2v9t_B 92 ITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDN-KLQTIAKGTFSPLRAIQTMHLAQNPFI 165 (220)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSSCEE
T ss_pred CCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCC-cCCEECHHHHhCCCCCCEEEeCCCCcC
Confidence 8877 34788888999999888888774 56888888889988884 477787776888888888888888654
No 98
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.53 E-value=7.2e-14 Score=151.51 Aligned_cols=237 Identities=14% Similarity=0.152 Sum_probs=156.8
Q ss_pred ceeeecCCcccccCChhhhcCCCCccEEEecCCcCcccCc-cccCCCCCCEEEccCCcccC-c--ccccCCCCCcE-Eec
Q 002313 235 KLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHSLPS-SLGCLINLRTLSLENCLVVD-V--AIIGDLKKLEI-LSL 309 (937)
Q Consensus 235 ~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~lp~-~i~~l~~Lr~L~L~~~~~~~-l--~~i~~L~~L~~-L~L 309 (937)
++++..+++ ..++|.++ .++++.|+|++|.++.+|. .|.++++|++|+|++|.+.. + ..|.++++|++ +.+
T Consensus 12 ~~v~C~~~~-Lt~iP~~l---~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~ 87 (350)
T 4ay9_X 12 RVFLCQESK-VTEIPSDL---PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIE 87 (350)
T ss_dssp TEEEEESTT-CCSCCTTC---CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEE
T ss_pred CEEEecCCC-CCccCcCc---CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcc
Confidence 566666655 45788765 4689999999999999975 58999999999999998754 3 56889998876 556
Q ss_pred ccCcCcccC-cccccCccCCEEEecCCCCCcccChhhhcCCCCCcEEEcCCCcccceecCCCCCChhhhcCCC-CCCeEE
Q 002313 310 KHSSIEQLP-REIGQLTCLKLLDLSNCSKLKEIRPNVISNLTRLEELYMGNSFTQWKVEGQSNASLGELKQLS-RLTTLE 387 (937)
Q Consensus 310 ~~~~l~~lp-~~i~~L~~L~~L~l~~~~~l~~lp~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~-~L~~L~ 387 (937)
.+|+++.+| ..+..+++|++|++++| .+..+|...+....++..|++.++.... ......+..+. .++.|+
T Consensus 88 ~~N~l~~l~~~~f~~l~~L~~L~l~~n-~l~~~~~~~~~~~~~l~~l~l~~~~~i~------~l~~~~f~~~~~~l~~L~ 160 (350)
T 4ay9_X 88 KANNLLYINPEAFQNLPNLQYLLISNT-GIKHLPDVHKIHSLQKVLLDIQDNINIH------TIERNSFVGLSFESVILW 160 (350)
T ss_dssp EETTCCEECTTSBCCCTTCCEEEEEEE-CCSSCCCCTTCCBSSCEEEEEESCTTCC------EECTTSSTTSBSSCEEEE
T ss_pred cCCcccccCchhhhhcccccccccccc-ccccCCchhhcccchhhhhhhccccccc------cccccchhhcchhhhhhc
Confidence 678899886 56899999999999985 5888877656667778888876542110 11112233332 466777
Q ss_pred eecCCCCCCCccccccccceeEEEecCcCCCCCCcCCcceEEEecccccchhhhHHHHhhcccccccccccChhhhhhcc
Q 002313 388 VHIPDAQVMPQDLVFVELERFRICIGDVWSWSDGYETSKTLKLQLNNSTYLGYGMKMLLKRTEDLHLDELAGFKNVVHEL 467 (937)
Q Consensus 388 l~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l 467 (937)
++++.+..++..+
T Consensus 161 L~~N~i~~i~~~~------------------------------------------------------------------- 173 (350)
T 4ay9_X 161 LNKNGIQEIHNSA------------------------------------------------------------------- 173 (350)
T ss_dssp CCSSCCCEECTTS-------------------------------------------------------------------
T ss_pred cccccccCCChhh-------------------------------------------------------------------
Confidence 7776655443321
Q ss_pred cchhhcccCcEEEeecCCceEEEEccCCccccccccceecccccccccccccccccCCCCCccCCCccEEEEecCCCccc
Q 002313 468 DDEEGFARLRHLHVHNGPEILHILNSDGRVGTFPLLESLFLHNLINLEKVCDGKVRLNEDDKSFSNLRIIKVEGCHRVKH 547 (937)
Q Consensus 468 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~l~~~~~~~~~~~~~~~~l~~L~~L~l~~C~~L~~ 547 (937)
.. ..+|++|.+.++..++.++. .....+++|++|+++++ .++.+ | ...+.+|+.|.+.+++.++.
T Consensus 174 f~---~~~L~~l~l~~~n~l~~i~~--~~f~~l~~L~~LdLs~N-~l~~l-----p----~~~~~~L~~L~~l~~~~l~~ 238 (350)
T 4ay9_X 174 FN---GTQLDELNLSDNNNLEELPN--DVFHGASGPVILDISRT-RIHSL-----P----SYGLENLKKLRARSTYNLKK 238 (350)
T ss_dssp ST---TEEEEEEECTTCTTCCCCCT--TTTTTEECCSEEECTTS-CCCCC-----C----SSSCTTCCEEECTTCTTCCC
T ss_pred cc---ccchhHHhhccCCcccCCCH--HHhccCcccchhhcCCC-CcCcc-----C----hhhhccchHhhhccCCCcCc
Confidence 00 23455555554444443321 11234556666666653 34433 2 24567888888888888888
Q ss_pred ccchhHHHhhccccEEEEcc
Q 002313 548 LFPFSLVKNLLQLQKVKVTD 567 (937)
Q Consensus 548 l~~~~~~~~l~~L~~L~i~~ 567 (937)
+|++ ..+++|+.+++.+
T Consensus 239 lP~l---~~l~~L~~l~l~~ 255 (350)
T 4ay9_X 239 LPTL---EKLVALMEASLTY 255 (350)
T ss_dssp CCCT---TTCCSCCEEECSC
T ss_pred CCCc---hhCcChhhCcCCC
Confidence 8753 4678888888765
No 99
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.52 E-value=1.4e-14 Score=154.42 Aligned_cols=162 Identities=14% Similarity=0.100 Sum_probs=74.8
Q ss_pred CCccceeeecCCcccccCChhhh-cCCCCccEEEecCCcCccc-C----ccccCCCCCCEEEccCCcccCc--ccccCCC
Q 002313 231 FLKLKLFLFFTENLSLQIPDPFF-EGMTELRVLDLTGFRFHSL-P----SSLGCLINLRTLSLENCLVVDV--AIIGDLK 302 (937)
Q Consensus 231 ~~~L~~L~l~~~~~~~~~~~~~~-~~l~~Lr~L~L~~~~~~~l-p----~~i~~l~~Lr~L~L~~~~~~~l--~~i~~L~ 302 (937)
+++|++|++.+|.+....|..++ ..+++|++|++++|.+... | ..+..+++|++|++++|.+..+ ..++.++
T Consensus 90 ~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~ 169 (310)
T 4glp_A 90 YSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFP 169 (310)
T ss_dssp HSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCT
T ss_pred cCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCC
Confidence 34455555555554444444433 4555555555555555421 1 1233455555555555555433 3455555
Q ss_pred CCcEEecccCcCcc---cC--cccccCccCCEEEecCCCCCcccChh---hhcCCCCCcEEEcCCCcccceecCCCCCCh
Q 002313 303 KLEILSLKHSSIEQ---LP--REIGQLTCLKLLDLSNCSKLKEIRPN---VISNLTRLEELYMGNSFTQWKVEGQSNASL 374 (937)
Q Consensus 303 ~L~~L~L~~~~l~~---lp--~~i~~L~~L~~L~l~~~~~l~~lp~~---~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~ 374 (937)
+|++|++++|.+.. ++ ..++++++|++|++++|. ++.++.. .++.+++|++|++++|.+. +..+..+
T Consensus 170 ~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~-l~~l~~~~~~l~~~l~~L~~L~Ls~N~l~----~~~p~~~ 244 (310)
T 4glp_A 170 ALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTG-METPTGVCAALAAAGVQPHSLDLSHNSLR----ATVNPSA 244 (310)
T ss_dssp TCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSC-CCCHHHHHHHHHHHTCCCSSEECTTSCCC----CCCCSCC
T ss_pred CCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCC-CCchHHHHHHHHhcCCCCCEEECCCCCCC----ccchhhH
Confidence 55555555554432 22 122455555555555532 4333321 1344555555555555443 1111122
Q ss_pred hhhcCCCCCCeEEeecCCCCCCC
Q 002313 375 GELKQLSRLTTLEVHIPDAQVMP 397 (937)
Q Consensus 375 ~~l~~l~~L~~L~l~~~~~~~~~ 397 (937)
..+..+++|+.|+++++.+..+|
T Consensus 245 ~~~~~~~~L~~L~Ls~N~l~~lp 267 (310)
T 4glp_A 245 PRCMWSSALNSLNLSFAGLEQVP 267 (310)
T ss_dssp SSCCCCTTCCCEECCSSCCCSCC
T ss_pred HhccCcCcCCEEECCCCCCCchh
Confidence 22222345555555555544443
No 100
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.52 E-value=1.3e-14 Score=156.93 Aligned_cols=103 Identities=19% Similarity=0.265 Sum_probs=54.7
Q ss_pred CCccEEEecCCcCcccCccccCCCCCCEEEccCCcccC--c-ccccCCCCCcEEecccCcCc-ccCcccccCccCCEEEe
Q 002313 257 TELRVLDLTGFRFHSLPSSLGCLINLRTLSLENCLVVD--V-AIIGDLKKLEILSLKHSSIE-QLPREIGQLTCLKLLDL 332 (937)
Q Consensus 257 ~~Lr~L~L~~~~~~~lp~~i~~l~~Lr~L~L~~~~~~~--l-~~i~~L~~L~~L~L~~~~l~-~lp~~i~~L~~L~~L~l 332 (937)
+++++|++++|.+...+..+.++++|++|++++|.+.. + ..+..+++|++|++++|.+. ..|..++++++|++|++
T Consensus 70 ~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L 149 (336)
T 2ast_B 70 QGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNL 149 (336)
T ss_dssp TTCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEEC
T ss_pred ccceEEEcCCccccccchhhccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEEC
Confidence 45555555555555444445555556666665555442 2 34555555566665555544 34445555566666666
Q ss_pred cCCCCCcc--cChhhhcCCCCCcEEEcCCC
Q 002313 333 SNCSKLKE--IRPNVISNLTRLEELYMGNS 360 (937)
Q Consensus 333 ~~~~~l~~--lp~~~l~~L~~L~~L~l~~~ 360 (937)
++|..+.. ++.. ++++++|++|++++|
T Consensus 150 ~~~~~l~~~~l~~~-~~~~~~L~~L~l~~~ 178 (336)
T 2ast_B 150 SGCSGFSEFALQTL-LSSCSRLDELNLSWC 178 (336)
T ss_dssp TTCBSCCHHHHHHH-HHHCTTCCEEECCCC
T ss_pred CCCCCCCHHHHHHH-HhcCCCCCEEcCCCC
Confidence 65533442 3322 455555666665555
No 101
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.51 E-value=7.9e-14 Score=137.45 Aligned_cols=148 Identities=19% Similarity=0.199 Sum_probs=100.8
Q ss_pred ccCCCcEEEccCCCCccCCcccCCCccceeeecCCcccccCChhhhcCCCCccEEEecCCcCcc-cCccccCCCCCCEEE
Q 002313 208 IDEAPTAISIPFRGIYELPERLGFLKLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHS-LPSSLGCLINLRTLS 286 (937)
Q Consensus 208 ~~~~l~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~-lp~~i~~l~~Lr~L~ 286 (937)
.+.+++.++++++.+..++....+++|++|++.+|.. ..++ .+..+++|++|++++|.+.. .|..++.+++|++|+
T Consensus 42 ~l~~L~~L~l~~n~i~~l~~l~~l~~L~~L~l~~n~~-~~~~--~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~ 118 (197)
T 4ezg_A 42 QMNSLTYITLANINVTDLTGIEYAHNIKDLTINNIHA-TNYN--PISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLD 118 (197)
T ss_dssp HHHTCCEEEEESSCCSCCTTGGGCTTCSEEEEESCCC-SCCG--GGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEE
T ss_pred hcCCccEEeccCCCccChHHHhcCCCCCEEEccCCCC-Ccch--hhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEE
Confidence 3456788888888777777433677777777777732 2232 25677777777777777764 466677777777777
Q ss_pred ccCCcccC--cccccCCCCCcEEecccCc-CcccCcccccCccCCEEEecCCCCCcccChhhhcCCCCCcEEEcCCCcc
Q 002313 287 LENCLVVD--VAIIGDLKKLEILSLKHSS-IEQLPREIGQLTCLKLLDLSNCSKLKEIRPNVISNLTRLEELYMGNSFT 362 (937)
Q Consensus 287 L~~~~~~~--l~~i~~L~~L~~L~L~~~~-l~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~l~~L~~L~~L~l~~~~~ 362 (937)
+++|.+.. +..++.+++|++|++++|. +..+| .+..+++|++|++++| .+..++. +..+++|++|++++|.+
T Consensus 119 Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~n-~i~~~~~--l~~l~~L~~L~l~~N~i 193 (197)
T 4ezg_A 119 ISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFD-GVHDYRG--IEDFPKLNQLYAFSQTI 193 (197)
T ss_dssp CCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG-GGGGCSSCCEEECTTB-CCCCCTT--GGGCSSCCEEEECBC--
T ss_pred ecCCccCcHhHHHHhhCCCCCEEEccCCCCccccH-hhcCCCCCCEEECCCC-CCcChHH--hccCCCCCEEEeeCccc
Confidence 77777765 3667777777777777776 66666 5777777777777774 3666652 67777777777776654
No 102
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.51 E-value=2.2e-14 Score=148.30 Aligned_cols=171 Identities=19% Similarity=0.222 Sum_probs=129.4
Q ss_pred cCCCcEEEccCCCCccCCcccCCCccceeeecCCcccccCChhhhcCCCCccEEEecCCcCcccCccccCCCCCCEEEcc
Q 002313 209 DEAPTAISIPFRGIYELPERLGFLKLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHSLPSSLGCLINLRTLSLE 288 (937)
Q Consensus 209 ~~~l~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~lp~~i~~l~~Lr~L~L~ 288 (937)
+..+..+++..+.+..++....+++|++|++.+|.+. .++. +..+++|++|++++|.+..+|. +.++++|++|+++
T Consensus 18 l~~l~~l~l~~~~i~~~~~~~~l~~L~~L~l~~n~i~-~l~~--l~~l~~L~~L~L~~N~i~~~~~-l~~l~~L~~L~L~ 93 (263)
T 1xeu_A 18 LANAVKQNLGKQSVTDLVSQKELSGVQNFNGDNSNIQ-SLAG--MQFFTNLKELHLSHNQISDLSP-LKDLTKLEELSVN 93 (263)
T ss_dssp HHHHHHHHHTCSCTTSEECHHHHTTCSEEECTTSCCC-CCTT--GGGCTTCCEEECCSSCCCCCGG-GTTCSSCCEEECC
T ss_pred HHHHHHHHhcCCCcccccchhhcCcCcEEECcCCCcc-cchH--HhhCCCCCEEECCCCccCCChh-hccCCCCCEEECC
Confidence 3445556666677776664446788888888877643 5552 5788888888888888888876 8888888888888
Q ss_pred CCcccCcccccCCCCCcEEecccCcCcccCcccccCccCCEEEecCCCCCcccChhhhcCCCCCcEEEcCCCcccceecC
Q 002313 289 NCLVVDVAIIGDLKKLEILSLKHSSIEQLPREIGQLTCLKLLDLSNCSKLKEIRPNVISNLTRLEELYMGNSFTQWKVEG 368 (937)
Q Consensus 289 ~~~~~~l~~i~~L~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~l~~L~~L~~L~l~~~~~~~~~~~ 368 (937)
+|.++.++.+.. .+|++|++++|.++.+| .++++++|++|++++| .++.++. ++.+++|++|++++|.+. +
T Consensus 94 ~N~l~~l~~~~~-~~L~~L~L~~N~l~~~~-~l~~l~~L~~L~Ls~N-~i~~~~~--l~~l~~L~~L~L~~N~i~----~ 164 (263)
T 1xeu_A 94 RNRLKNLNGIPS-ACLSRLFLDNNELRDTD-SLIHLKNLEILSIRNN-KLKSIVM--LGFLSKLEVLDLHGNEIT----N 164 (263)
T ss_dssp SSCCSCCTTCCC-SSCCEEECCSSCCSBSG-GGTTCTTCCEEECTTS-CCCBCGG--GGGCTTCCEEECTTSCCC----B
T ss_pred CCccCCcCcccc-CcccEEEccCCccCCCh-hhcCcccccEEECCCC-cCCCChH--HccCCCCCEEECCCCcCc----c
Confidence 888887765555 88888888888888876 5888888888888884 4777763 788888888888888664 1
Q ss_pred CCCCChhhhcCCCCCCeEEeecCCCCCCC
Q 002313 369 QSNASLGELKQLSRLTTLEVHIPDAQVMP 397 (937)
Q Consensus 369 ~~~~~~~~l~~l~~L~~L~l~~~~~~~~~ 397 (937)
...+..+++|+.|+++++.+...+
T Consensus 165 -----~~~l~~l~~L~~L~l~~N~~~~~~ 188 (263)
T 1xeu_A 165 -----TGGLTRLKKVNWIDLTGQKCVNEP 188 (263)
T ss_dssp -----CTTSTTCCCCCEEEEEEEEEECCC
T ss_pred -----hHHhccCCCCCEEeCCCCcccCCc
Confidence 156777888888888887655443
No 103
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.51 E-value=7e-14 Score=137.81 Aligned_cols=150 Identities=17% Similarity=0.272 Sum_probs=121.5
Q ss_pred CCCccceeeecCCcccccCChhhhcCCCCccEEEecCCcCcccCccccCCCCCCEEEccCCcccC--cccccCCCCCcEE
Q 002313 230 GFLKLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHSLPSSLGCLINLRTLSLENCLVVD--VAIIGDLKKLEIL 307 (937)
Q Consensus 230 ~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~lp~~i~~l~~Lr~L~L~~~~~~~--l~~i~~L~~L~~L 307 (937)
.+++|++|++.++.+. .+|. +..+++|++|++++|.+..++ .+..+++|++|++++|.+.. +..++.+++|++|
T Consensus 42 ~l~~L~~L~l~~n~i~-~l~~--l~~l~~L~~L~l~~n~~~~~~-~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L 117 (197)
T 4ezg_A 42 QMNSLTYITLANINVT-DLTG--IEYAHNIKDLTINNIHATNYN-PISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLL 117 (197)
T ss_dssp HHHTCCEEEEESSCCS-CCTT--GGGCTTCSEEEEESCCCSCCG-GGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEE
T ss_pred hcCCccEEeccCCCcc-ChHH--HhcCCCCCEEEccCCCCCcch-hhhcCCCCCEEEeECCccCcccChhhcCCCCCCEE
Confidence 5778999999888755 6663 688999999999999777654 68889999999999999885 5788999999999
Q ss_pred ecccCcCcc-cCcccccCccCCEEEecCCCCCcccChhhhcCCCCCcEEEcCCCcccceecCCCCCChhhhcCCCCCCeE
Q 002313 308 SLKHSSIEQ-LPREIGQLTCLKLLDLSNCSKLKEIRPNVISNLTRLEELYMGNSFTQWKVEGQSNASLGELKQLSRLTTL 386 (937)
Q Consensus 308 ~L~~~~l~~-lp~~i~~L~~L~~L~l~~~~~l~~lp~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L 386 (937)
++++|.++. .|..++++++|++|++++|..+..+|. ++.+++|++|++++|.+. .+..+..+++|+.|
T Consensus 118 ~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~~--l~~l~~L~~L~l~~n~i~---------~~~~l~~l~~L~~L 186 (197)
T 4ezg_A 118 DISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIMP--LKTLPELKSLNIQFDGVH---------DYRGIEDFPKLNQL 186 (197)
T ss_dssp ECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCGG--GGGCSSCCEEECTTBCCC---------CCTTGGGCSSCCEE
T ss_pred EecCCccCcHhHHHHhhCCCCCEEEccCCCCccccHh--hcCCCCCCEEECCCCCCc---------ChHHhccCCCCCEE
Confidence 999998885 567789999999999999766888873 889999999999988664 12367778889999
Q ss_pred EeecCCCC
Q 002313 387 EVHIPDAQ 394 (937)
Q Consensus 387 ~l~~~~~~ 394 (937)
+++++.+.
T Consensus 187 ~l~~N~i~ 194 (197)
T 4ezg_A 187 YAFSQTIG 194 (197)
T ss_dssp EECBC---
T ss_pred EeeCcccC
Confidence 99887654
No 104
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.49 E-value=1.2e-13 Score=147.13 Aligned_cols=191 Identities=15% Similarity=0.103 Sum_probs=147.7
Q ss_pred cCCCcEEEccCCCCccC-Ccc---cCCCccceeeecCCcccccCC---hhhhcCCCCccEEEecCCcCccc-CccccCCC
Q 002313 209 DEAPTAISIPFRGIYEL-PER---LGFLKLKLFLFFTENLSLQIP---DPFFEGMTELRVLDLTGFRFHSL-PSSLGCLI 280 (937)
Q Consensus 209 ~~~l~~l~l~~~~~~~l-~~~---~~~~~L~~L~l~~~~~~~~~~---~~~~~~l~~Lr~L~L~~~~~~~l-p~~i~~l~ 280 (937)
..+++.+++++|.+... |.. ..+++|++|++.+|.+....+ ...+..+++|++|++++|.+..+ |..++.++
T Consensus 90 ~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~ 169 (310)
T 4glp_A 90 YSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFP 169 (310)
T ss_dssp HSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCT
T ss_pred cCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCC
Confidence 45699999999988754 444 358899999999998766544 22245799999999999999877 46789999
Q ss_pred CCCEEEccCCcccC---c---ccccCCCCCcEEecccCcCcccCcc----cccCccCCEEEecCCCCCccc-ChhhhcCC
Q 002313 281 NLRTLSLENCLVVD---V---AIIGDLKKLEILSLKHSSIEQLPRE----IGQLTCLKLLDLSNCSKLKEI-RPNVISNL 349 (937)
Q Consensus 281 ~Lr~L~L~~~~~~~---l---~~i~~L~~L~~L~L~~~~l~~lp~~----i~~L~~L~~L~l~~~~~l~~l-p~~~l~~L 349 (937)
+|++|++++|++.. + ..++++++|++|++++|.++.+|.. ++.+++|++|++++|. +... |.. ++.+
T Consensus 170 ~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~~L~~L~Ls~N~-l~~~~p~~-~~~~ 247 (310)
T 4glp_A 170 ALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAAGVQPHSLDLSHNS-LRATVNPS-APRC 247 (310)
T ss_dssp TCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHTCCCSSEECTTSC-CCCCCCSC-CSSC
T ss_pred CCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcCCCCCEEECCCCC-CCccchhh-HHhc
Confidence 99999999998653 2 3347899999999999999877753 5788999999999965 6665 654 6666
Q ss_pred ---CCCcEEEcCCCcccceecCCCCCChhhhcCCCCCCeEEeecCCCCCCCccccccccceeEEE
Q 002313 350 ---TRLEELYMGNSFTQWKVEGQSNASLGELKQLSRLTTLEVHIPDAQVMPQDLVFVELERFRIC 411 (937)
Q Consensus 350 ---~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~l~l~ 411 (937)
++|++|++++|.+. ..+..+. ++|+.|++++|.+..+|....+++|+.+.+.
T Consensus 248 ~~~~~L~~L~Ls~N~l~--------~lp~~~~--~~L~~L~Ls~N~l~~~~~~~~l~~L~~L~L~ 302 (310)
T 4glp_A 248 MWSSALNSLNLSFAGLE--------QVPKGLP--AKLRVLDLSSNRLNRAPQPDELPEVDNLTLD 302 (310)
T ss_dssp CCCTTCCCEECCSSCCC--------SCCSCCC--SCCSCEECCSCCCCSCCCTTSCCCCSCEECS
T ss_pred cCcCcCCEEECCCCCCC--------chhhhhc--CCCCEEECCCCcCCCCchhhhCCCccEEECc
Confidence 69999999999765 1222222 6899999999998877654456777776654
No 105
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.48 E-value=4.9e-14 Score=162.63 Aligned_cols=184 Identities=20% Similarity=0.268 Sum_probs=151.6
Q ss_pred CcEEEccCCCCccCCcccCCCccceeeecCCcccccCChhhhcCCCCccEEEecCCcCcccCccccCCCCCCEEEccCCc
Q 002313 212 PTAISIPFRGIYELPERLGFLKLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHSLPSSLGCLINLRTLSLENCL 291 (937)
Q Consensus 212 l~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~lp~~i~~l~~Lr~L~L~~~~ 291 (937)
+..+.+..+.+..+.....+.+|+.|++.++.+. .++. +..+++|+.|+|++|.+..+|. +..+++|++|+|++|.
T Consensus 23 l~~l~l~~~~i~~~~~~~~L~~L~~L~l~~n~i~-~l~~--l~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~ 98 (605)
T 1m9s_A 23 TIKDNLKKKSVTDAVTQNELNSIDQIIANNSDIK-SVQG--IQYLPNVTKLFLNGNKLTDIKP-LTNLKNLGWLFLDENK 98 (605)
T ss_dssp HHHHHTTCSCTTSEECHHHHTTCCCCBCTTCCCC-CCTT--GGGCTTCCEEECTTSCCCCCGG-GGGCTTCCEEECCSSC
T ss_pred HHHHhccCCCcccccchhcCCCCCEEECcCCCCC-CChH--HccCCCCCEEEeeCCCCCCChh-hccCCCCCEEECcCCC
Confidence 4444555555555555456889999999988753 4553 6899999999999999998876 9999999999999999
Q ss_pred ccCcccccCCCCCcEEecccCcCcccCcccccCccCCEEEecCCCCCcccChhhhcCCCCCcEEEcCCCcccceecCCCC
Q 002313 292 VVDVAIIGDLKKLEILSLKHSSIEQLPREIGQLTCLKLLDLSNCSKLKEIRPNVISNLTRLEELYMGNSFTQWKVEGQSN 371 (937)
Q Consensus 292 ~~~l~~i~~L~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~l~~L~~L~~L~l~~~~~~~~~~~~~~ 371 (937)
+..++.++.+++|++|+|++|.+..+| .+..+++|++|++++| .+..++. ++.+++|++|++++|.+.
T Consensus 99 l~~l~~l~~l~~L~~L~Ls~N~l~~l~-~l~~l~~L~~L~Ls~N-~l~~l~~--l~~l~~L~~L~Ls~N~l~-------- 166 (605)
T 1m9s_A 99 IKDLSSLKDLKKLKSLSLEHNGISDIN-GLVHLPQLESLYLGNN-KITDITV--LSRLTKLDTLSLEDNQIS-------- 166 (605)
T ss_dssp CCCCTTSTTCTTCCEEECTTSCCCCCG-GGGGCTTCSEEECCSS-CCCCCGG--GGSCTTCSEEECCSSCCC--------
T ss_pred CCCChhhccCCCCCEEEecCCCCCCCc-cccCCCccCEEECCCC-ccCCchh--hcccCCCCEEECcCCcCC--------
Confidence 999999999999999999999999875 5999999999999996 4777743 899999999999999764
Q ss_pred CChhhhcCCCCCCeEEeecCCCCCCCccccccccceeEEEe
Q 002313 372 ASLGELKQLSRLTTLEVHIPDAQVMPQDLVFVELERFRICI 412 (937)
Q Consensus 372 ~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~l~l~~ 412 (937)
.... +..+++|+.|+++.+.+..++....+++|+.|.+..
T Consensus 167 ~~~~-l~~l~~L~~L~Ls~N~i~~l~~l~~l~~L~~L~L~~ 206 (605)
T 1m9s_A 167 DIVP-LAGLTKLQNLYLSKNHISDLRALAGLKNLDVLELFS 206 (605)
T ss_dssp CCGG-GTTCTTCCEEECCSSCCCBCGGGTTCTTCSEEECCS
T ss_pred Cchh-hccCCCCCEEECcCCCCCCChHHccCCCCCEEEccC
Confidence 1222 888999999999999988775544677787777654
No 106
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.48 E-value=1.3e-13 Score=137.35 Aligned_cols=164 Identities=24% Similarity=0.346 Sum_probs=122.8
Q ss_pred cEEEccCCCCccCCcccCCCccceeeecCCcccccCChhhhcCCCCccEEEecCCcCcccCcc-ccCCCCCCEEEccCCc
Q 002313 213 TAISIPFRGIYELPERLGFLKLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHSLPSS-LGCLINLRTLSLENCL 291 (937)
Q Consensus 213 ~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~lp~~-i~~l~~Lr~L~L~~~~ 291 (937)
+.++..++.+..+|..+ .+++++|++.+|.+. .++..+|..+++|++|++++|.+..+|.. |..+++|++|++++|.
T Consensus 10 ~~v~c~~~~l~~~p~~~-~~~l~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~ 87 (208)
T 2o6s_A 10 TTVECYSQGRTSVPTGI-PAQTTYLDLETNSLK-SLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQ 87 (208)
T ss_dssp TEEECCSSCCSSCCSCC-CTTCSEEECCSSCCC-CCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred CEEEecCCCccCCCCCC-CCCCcEEEcCCCccC-cCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCc
Confidence 45666667777777655 457888888888754 56666678888888888888888877654 6788888888888888
Q ss_pred ccCc--ccccCCCCCcEEecccCcCcccCcc-cccCccCCEEEecCCCCCcccChhhhcCCCCCcEEEcCCCcccceecC
Q 002313 292 VVDV--AIIGDLKKLEILSLKHSSIEQLPRE-IGQLTCLKLLDLSNCSKLKEIRPNVISNLTRLEELYMGNSFTQWKVEG 368 (937)
Q Consensus 292 ~~~l--~~i~~L~~L~~L~L~~~~l~~lp~~-i~~L~~L~~L~l~~~~~l~~lp~~~l~~L~~L~~L~l~~~~~~~~~~~ 368 (937)
++.+ ..++++++|++|++++|.++.+|.. ++++++|++|++++| .+..++...++.+++|++|++++|.+.
T Consensus 88 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~~~~~~l~~L~~L~l~~N~~~----- 161 (208)
T 2o6s_A 88 LQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQN-QLKSVPDGVFDRLTSLQYIWLHDNPWD----- 161 (208)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSCCBC-----
T ss_pred CCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCC-ccceeCHHHhccCCCccEEEecCCCee-----
Confidence 8766 3478888888888888888888764 688888888888885 477777776788888888888887543
Q ss_pred CCCCChhhhcCCCCCCeEEeecCCC
Q 002313 369 QSNASLGELKQLSRLTTLEVHIPDA 393 (937)
Q Consensus 369 ~~~~~~~~l~~l~~L~~L~l~~~~~ 393 (937)
..+++|+.|+++.+..
T Consensus 162 ---------~~~~~l~~L~~~~n~~ 177 (208)
T 2o6s_A 162 ---------CTCPGIRYLSEWINKH 177 (208)
T ss_dssp ---------CCTTTTHHHHHHHHHC
T ss_pred ---------cCCCCHHHHHHHHHhC
Confidence 1234566666665543
No 107
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.48 E-value=5.6e-13 Score=132.78 Aligned_cols=128 Identities=25% Similarity=0.360 Sum_probs=61.4
Q ss_pred CCccEEEecCCcCcccCc-cccCCCCCCEEEccCCcccCc--ccccCCCCCcEEecccCcCcccCcc-cccCccCCEEEe
Q 002313 257 TELRVLDLTGFRFHSLPS-SLGCLINLRTLSLENCLVVDV--AIIGDLKKLEILSLKHSSIEQLPRE-IGQLTCLKLLDL 332 (937)
Q Consensus 257 ~~Lr~L~L~~~~~~~lp~-~i~~l~~Lr~L~L~~~~~~~l--~~i~~L~~L~~L~L~~~~l~~lp~~-i~~L~~L~~L~l 332 (937)
++|++|++++|.+..+|. .+..+++|++|++++|.++.+ ..++.+++|++|++++|.++.+|.. ++++++|++|++
T Consensus 28 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 107 (208)
T 2o6s_A 28 AQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELAL 107 (208)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEEc
Confidence 345555555555554433 244555555555555555444 2244555555555555555554433 345555555555
Q ss_pred cCCCCCcccChhhhcCCCCCcEEEcCCCcccceecCCCCCChhhhcCCCCCCeEEeecCC
Q 002313 333 SNCSKLKEIRPNVISNLTRLEELYMGNSFTQWKVEGQSNASLGELKQLSRLTTLEVHIPD 392 (937)
Q Consensus 333 ~~~~~l~~lp~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~ 392 (937)
++| .+..++...++.+++|++|++++|.+. ......+..+++|+.|+++++.
T Consensus 108 ~~N-~l~~~~~~~~~~l~~L~~L~l~~N~l~-------~~~~~~~~~l~~L~~L~l~~N~ 159 (208)
T 2o6s_A 108 NTN-QLQSLPDGVFDKLTQLKDLRLYQNQLK-------SVPDGVFDRLTSLQYIWLHDNP 159 (208)
T ss_dssp CSS-CCCCCCTTTTTTCTTCCEEECCSSCCS-------CCCTTTTTTCTTCCEEECCSCC
T ss_pred CCC-cCcccCHhHhccCCcCCEEECCCCccc-------eeCHHHhccCCCccEEEecCCC
Confidence 552 344444444455555555555554332 1111223444555555555543
No 108
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.46 E-value=1.5e-13 Score=149.62 Aligned_cols=172 Identities=21% Similarity=0.257 Sum_probs=122.8
Q ss_pred cEEEccCCCCccCCcccCCCccceeeecCCcccccCChhhhc-CCCCccEEEecCCcCcccC-ccccCCCCCCEEEccCC
Q 002313 213 TAISIPFRGIYELPERLGFLKLKLFLFFTENLSLQIPDPFFE-GMTELRVLDLTGFRFHSLP-SSLGCLINLRTLSLENC 290 (937)
Q Consensus 213 ~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~-~l~~Lr~L~L~~~~~~~lp-~~i~~l~~Lr~L~L~~~ 290 (937)
+.++.+++.+..+|..+ ...++.|++++|.+. .++...|. .+++|++|+|++|.+..+| ..|.++++|++|+|++|
T Consensus 21 ~~l~c~~~~l~~iP~~~-~~~l~~L~Ls~N~l~-~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N 98 (361)
T 2xot_A 21 NILSCSKQQLPNVPQSL-PSYTALLDLSHNNLS-RLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSN 98 (361)
T ss_dssp TEEECCSSCCSSCCSSC-CTTCSEEECCSSCCC-EECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred CEEEeCCCCcCccCccC-CCCCCEEECCCCCCC-ccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCC
Confidence 56777777777777655 345778888877654 45555556 7888888888888888775 45888888888888888
Q ss_pred cccCc--ccccCCCCCcEEecccCcCccc-CcccccCccCCEEEecCCCCCcccChhhh---cCCCCCcEEEcCCCcccc
Q 002313 291 LVVDV--AIIGDLKKLEILSLKHSSIEQL-PREIGQLTCLKLLDLSNCSKLKEIRPNVI---SNLTRLEELYMGNSFTQW 364 (937)
Q Consensus 291 ~~~~l--~~i~~L~~L~~L~L~~~~l~~l-p~~i~~L~~L~~L~l~~~~~l~~lp~~~l---~~L~~L~~L~l~~~~~~~ 364 (937)
.+..+ ..|..+.+|++|++++|.+..+ |..+..+++|++|++++| .+..+|...+ +.+++|++|++++|.+.
T Consensus 99 ~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N-~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~- 176 (361)
T 2xot_A 99 HLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQN-QISRFPVELIKDGNKLPKLMLLDLSSNKLK- 176 (361)
T ss_dssp CCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS-CCCSCCGGGTC----CTTCCEEECCSSCCC-
T ss_pred cCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCC-cCCeeCHHHhcCcccCCcCCEEECCCCCCC-
Confidence 87766 4577888888888888888776 456788888888888884 5777877655 56888888888887654
Q ss_pred eecCCCCCChhhhcCCCC--CCeEEeecCCCC
Q 002313 365 KVEGQSNASLGELKQLSR--LTTLEVHIPDAQ 394 (937)
Q Consensus 365 ~~~~~~~~~~~~l~~l~~--L~~L~l~~~~~~ 394 (937)
......+..+.. ++.|++++|...
T Consensus 177 ------~l~~~~~~~l~~~~l~~l~l~~N~~~ 202 (361)
T 2xot_A 177 ------KLPLTDLQKLPAWVKNGLYLHNNPLE 202 (361)
T ss_dssp ------CCCHHHHHHSCHHHHTTEECCSSCEE
T ss_pred ------ccCHHHhhhccHhhcceEEecCCCcc
Confidence 223345555554 367788777543
No 109
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.46 E-value=2e-13 Score=140.97 Aligned_cols=147 Identities=20% Similarity=0.243 Sum_probs=129.6
Q ss_pred ccCCCcEEEccCCCCccCCcccCCCccceeeecCCcccccCChhhhcCCCCccEEEecCCcCcccCccccCCCCCCEEEc
Q 002313 208 IDEAPTAISIPFRGIYELPERLGFLKLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHSLPSSLGCLINLRTLSL 287 (937)
Q Consensus 208 ~~~~l~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~lp~~i~~l~~Lr~L~L 287 (937)
.+.+++.++++++.+..++....+++|++|++.+|.+. .++. |.++++|++|++++|.+..+|... . .+|++|++
T Consensus 39 ~l~~L~~L~l~~n~i~~l~~l~~l~~L~~L~L~~N~i~-~~~~--l~~l~~L~~L~L~~N~l~~l~~~~-~-~~L~~L~L 113 (263)
T 1xeu_A 39 ELSGVQNFNGDNSNIQSLAGMQFFTNLKELHLSHNQIS-DLSP--LKDLTKLEELSVNRNRLKNLNGIP-S-ACLSRLFL 113 (263)
T ss_dssp HHTTCSEEECTTSCCCCCTTGGGCTTCCEEECCSSCCC-CCGG--GTTCSSCCEEECCSSCCSCCTTCC-C-SSCCEEEC
T ss_pred hcCcCcEEECcCCCcccchHHhhCCCCCEEECCCCccC-CChh--hccCCCCCEEECCCCccCCcCccc-c-CcccEEEc
Confidence 46789999999999999985557999999999998765 4554 799999999999999999987644 3 99999999
Q ss_pred cCCcccCcccccCCCCCcEEecccCcCcccCcccccCccCCEEEecCCCCCcccChhhhcCCCCCcEEEcCCCccc
Q 002313 288 ENCLVVDVAIIGDLKKLEILSLKHSSIEQLPREIGQLTCLKLLDLSNCSKLKEIRPNVISNLTRLEELYMGNSFTQ 363 (937)
Q Consensus 288 ~~~~~~~l~~i~~L~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~l~~L~~L~~L~l~~~~~~ 363 (937)
++|.++.++.++.+++|++|++++|.++.+| .++.+++|++|++++| .+..++ .++.+++|++|++++|.+.
T Consensus 114 ~~N~l~~~~~l~~l~~L~~L~Ls~N~i~~~~-~l~~l~~L~~L~L~~N-~i~~~~--~l~~l~~L~~L~l~~N~~~ 185 (263)
T 1xeu_A 114 DNNELRDTDSLIHLKNLEILSIRNNKLKSIV-MLGFLSKLEVLDLHGN-EITNTG--GLTRLKKVNWIDLTGQKCV 185 (263)
T ss_dssp CSSCCSBSGGGTTCTTCCEEECTTSCCCBCG-GGGGCTTCCEEECTTS-CCCBCT--TSTTCCCCCEEEEEEEEEE
T ss_pred cCCccCCChhhcCcccccEEECCCCcCCCCh-HHccCCCCCEEECCCC-cCcchH--HhccCCCCCEEeCCCCccc
Confidence 9999999988999999999999999999987 6999999999999995 477773 3899999999999998765
No 110
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.45 E-value=3.1e-13 Score=147.09 Aligned_cols=159 Identities=26% Similarity=0.358 Sum_probs=69.9
Q ss_pred chhhhhhccCCCcEEEccCCCCccCCccc---CCCccceeeecCCcccccCChhhhcCCCCccEEEecCCcCcccCc-cc
Q 002313 201 LKEELDKIDEAPTAISIPFRGIYELPERL---GFLKLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHSLPS-SL 276 (937)
Q Consensus 201 ~~~~~~~~~~~l~~l~l~~~~~~~l~~~~---~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~lp~-~i 276 (937)
+..+|...+..++.|++++|.+..++... .+++|++|++.+|.+. .++...|..+++|++|+|++|.+..+|. .|
T Consensus 30 l~~iP~~~~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~-~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~ 108 (361)
T 2xot_A 30 LPNVPQSLPSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLN-FISSEAFVPVPNLRYLDLSSNHLHTLDEFLF 108 (361)
T ss_dssp CSSCCSSCCTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCC-EECTTTTTTCTTCCEEECCSSCCCEECTTTT
T ss_pred cCccCccCCCCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCC-ccChhhccCCCCCCEEECCCCcCCcCCHHHh
Confidence 33334333444444555554444443322 3444555554444432 2222334444455555555554444422 34
Q ss_pred cCCCCCCEEEccCCcccCc--ccccCCCCCcEEecccCcCcccCccc----ccCccCCEEEecCCCCCcccChhhhcCCC
Q 002313 277 GCLINLRTLSLENCLVVDV--AIIGDLKKLEILSLKHSSIEQLPREI----GQLTCLKLLDLSNCSKLKEIRPNVISNLT 350 (937)
Q Consensus 277 ~~l~~Lr~L~L~~~~~~~l--~~i~~L~~L~~L~L~~~~l~~lp~~i----~~L~~L~~L~l~~~~~l~~lp~~~l~~L~ 350 (937)
..+.+|++|+|++|.+..+ ..|.++.+|++|++++|.++.+|..+ ..+++|++|++++| .+..+|...+..++
T Consensus 109 ~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N-~l~~l~~~~~~~l~ 187 (361)
T 2xot_A 109 SDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSN-KLKKLPLTDLQKLP 187 (361)
T ss_dssp TTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSS-CCCCCCHHHHHHSC
T ss_pred CCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCC-CCCccCHHHhhhcc
Confidence 4445555555555444433 34444455555555555444444432 34444555555442 24444443344444
Q ss_pred C--CcEEEcCCCc
Q 002313 351 R--LEELYMGNSF 361 (937)
Q Consensus 351 ~--L~~L~l~~~~ 361 (937)
+ |+.|++.+|.
T Consensus 188 ~~~l~~l~l~~N~ 200 (361)
T 2xot_A 188 AWVKNGLYLHNNP 200 (361)
T ss_dssp HHHHTTEECCSSC
T ss_pred HhhcceEEecCCC
Confidence 3 2444444443
No 111
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.44 E-value=6.9e-14 Score=151.27 Aligned_cols=174 Identities=17% Similarity=0.262 Sum_probs=136.3
Q ss_pred CCCcEEEccCCCCccCCccc-CCCccceeeecCCccccc-CChhhhcCCCCccEEEecCCcCc-ccCccccCCCCCCEEE
Q 002313 210 EAPTAISIPFRGIYELPERL-GFLKLKLFLFFTENLSLQ-IPDPFFEGMTELRVLDLTGFRFH-SLPSSLGCLINLRTLS 286 (937)
Q Consensus 210 ~~l~~l~l~~~~~~~l~~~~-~~~~L~~L~l~~~~~~~~-~~~~~~~~l~~Lr~L~L~~~~~~-~lp~~i~~l~~Lr~L~ 286 (937)
..++.++++++.+...+... .+++|++|++.+|..... ++ .++..+++|++|++++|.+. ..|..++++++|++|+
T Consensus 70 ~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~-~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~ 148 (336)
T 2ast_B 70 QGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLH-GILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLN 148 (336)
T ss_dssp TTCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHH-HHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEE
T ss_pred ccceEEEcCCccccccchhhccCCCCCEEEccCCCcCHHHHH-HHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEE
Confidence 57888999888877655444 788999999998876544 44 44688999999999999887 5677888899999999
Q ss_pred ccCC-cccC--c-ccccCCCCCcEEecccC-cCcc--cCcccccCc-cCCEEEecCCC-CC--cccChhhhcCCCCCcEE
Q 002313 287 LENC-LVVD--V-AIIGDLKKLEILSLKHS-SIEQ--LPREIGQLT-CLKLLDLSNCS-KL--KEIRPNVISNLTRLEEL 355 (937)
Q Consensus 287 L~~~-~~~~--l-~~i~~L~~L~~L~L~~~-~l~~--lp~~i~~L~-~L~~L~l~~~~-~l--~~lp~~~l~~L~~L~~L 355 (937)
+++| .++. + ..+.++++|++|++++| .++. +|..+..++ +|++|++++|. .+ ..++.. ++++++|++|
T Consensus 149 L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~-~~~~~~L~~L 227 (336)
T 2ast_B 149 LSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTL-VRRCPNLVHL 227 (336)
T ss_dssp CTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHH-HHHCTTCSEE
T ss_pred CCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHH-HhhCCCCCEE
Confidence 9999 5663 4 45788999999999999 8874 677788999 99999999874 34 334443 6789999999
Q ss_pred EcCCCc-ccceecCCCCCChhhhcCCCCCCeEEeecCC
Q 002313 356 YMGNSF-TQWKVEGQSNASLGELKQLSRLTTLEVHIPD 392 (937)
Q Consensus 356 ~l~~~~-~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~ 392 (937)
++++|. +. ...+..+..+++|+.|+++++.
T Consensus 228 ~l~~~~~l~-------~~~~~~l~~l~~L~~L~l~~~~ 258 (336)
T 2ast_B 228 DLSDSVMLK-------NDCFQEFFQLNYLQHLSLSRCY 258 (336)
T ss_dssp ECTTCTTCC-------GGGGGGGGGCTTCCEEECTTCT
T ss_pred eCCCCCcCC-------HHHHHHHhCCCCCCEeeCCCCC
Confidence 999886 32 2445577788899999998875
No 112
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.44 E-value=6.7e-13 Score=127.08 Aligned_cols=139 Identities=27% Similarity=0.256 Sum_probs=104.5
Q ss_pred CCCCccEEEecCCcCc--ccCccccCCCCCCEEEccCCcccCcccccCCCCCcEEecccCcCcc-cCcccccCccCCEEE
Q 002313 255 GMTELRVLDLTGFRFH--SLPSSLGCLINLRTLSLENCLVVDVAIIGDLKKLEILSLKHSSIEQ-LPREIGQLTCLKLLD 331 (937)
Q Consensus 255 ~l~~Lr~L~L~~~~~~--~lp~~i~~l~~Lr~L~L~~~~~~~l~~i~~L~~L~~L~L~~~~l~~-lp~~i~~L~~L~~L~ 331 (937)
..++|++|++++|.+. .+|..+..+++|++|++++|.+..+..++.+++|++|++++|.+.. +|..++++++|++|+
T Consensus 22 ~~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 101 (168)
T 2ell_A 22 TPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISVSNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLN 101 (168)
T ss_dssp CTTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCCSSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEE
T ss_pred CcccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCChhhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEe
Confidence 3467888888888887 7888788888888888888888777778888888888888888877 666677788888888
Q ss_pred ecCCCCCcccCh-hhhcCCCCCcEEEcCCCcccceecCCCCCChhhhcCCCCCCeEEeecCCCCCCCc
Q 002313 332 LSNCSKLKEIRP-NVISNLTRLEELYMGNSFTQWKVEGQSNASLGELKQLSRLTTLEVHIPDAQVMPQ 398 (937)
Q Consensus 332 l~~~~~l~~lp~-~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~ 398 (937)
+++| .+..++. ..++.+++|++|++++|.+. +........+..+++|+.|+++.+.....|.
T Consensus 102 Ls~N-~l~~~~~~~~l~~l~~L~~L~l~~N~l~----~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~ 164 (168)
T 2ell_A 102 LSGN-KLKDISTLEPLKKLECLKSLDLFNCEVT----NLNDYRESVFKLLPQLTYLDGYDREDQEAPD 164 (168)
T ss_dssp CBSS-SCCSSGGGGGGSSCSCCCEEECCSSGGG----TSTTHHHHHHTTCSSCCEETTEETTSCBCCS
T ss_pred ccCC-ccCcchhHHHHhcCCCCCEEEeeCCcCc----chHHHHHHHHHhCccCcEecCCCCChhhccc
Confidence 8885 4777652 34788888888888888664 1111111367778888888888887766554
No 113
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.43 E-value=1.4e-12 Score=148.72 Aligned_cols=178 Identities=17% Similarity=0.211 Sum_probs=125.4
Q ss_pred CCCcEEEccCCCCccCCcccCCCccceeeecCCcccccCChhhhcCCCCccEEEecCCcCcccCccccCCCCCCEEEccC
Q 002313 210 EAPTAISIPFRGIYELPERLGFLKLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHSLPSSLGCLINLRTLSLEN 289 (937)
Q Consensus 210 ~~l~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~lp~~i~~l~~Lr~L~L~~ 289 (937)
.+++.|+++++.+..+|..+ .++|++|++.+|.+. .+| ..+++|++|++++|.++.+|. +.+ +|++|++++
T Consensus 59 ~~L~~L~Ls~n~L~~lp~~l-~~~L~~L~Ls~N~l~-~ip----~~l~~L~~L~Ls~N~l~~ip~-l~~--~L~~L~Ls~ 129 (571)
T 3cvr_A 59 NQFSELQLNRLNLSSLPDNL-PPQITVLEITQNALI-SLP----ELPASLEYLDACDNRLSTLPE-LPA--SLKHLDVDN 129 (571)
T ss_dssp TTCSEEECCSSCCSCCCSCC-CTTCSEEECCSSCCS-CCC----CCCTTCCEEECCSSCCSCCCC-CCT--TCCEEECCS
T ss_pred CCccEEEeCCCCCCccCHhH-cCCCCEEECcCCCCc-ccc----cccCCCCEEEccCCCCCCcch-hhc--CCCEEECCC
Confidence 36888888888888887765 377888888888755 676 346788888888888888887 665 888888888
Q ss_pred CcccCcccccCCCCCcEEecccCcCcccCcccccCccCCEEEecCCCCCcccChhhhcCCCCCcEEEcCCCcccceecCC
Q 002313 290 CLVVDVAIIGDLKKLEILSLKHSSIEQLPREIGQLTCLKLLDLSNCSKLKEIRPNVISNLTRLEELYMGNSFTQWKVEGQ 369 (937)
Q Consensus 290 ~~~~~l~~i~~L~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~l~~L~~L~~L~l~~~~~~~~~~~~ 369 (937)
|.++.++. .+++|++|++++|.++.+|. .+++|++|++++| .+..+|. ++ ++|+.|++++|.+. ..
T Consensus 130 N~l~~lp~--~l~~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~N-~L~~lp~--l~--~~L~~L~Ls~N~L~----~l 195 (571)
T 3cvr_A 130 NQLTMLPE--LPALLEYINADNNQLTMLPE---LPTSLEVLSVRNN-QLTFLPE--LP--ESLEALDVSTNLLE----SL 195 (571)
T ss_dssp SCCSCCCC--CCTTCCEEECCSSCCSCCCC---CCTTCCEEECCSS-CCSCCCC--CC--TTCCEEECCSSCCS----SC
T ss_pred CcCCCCCC--cCccccEEeCCCCccCcCCC---cCCCcCEEECCCC-CCCCcch--hh--CCCCEEECcCCCCC----ch
Confidence 88877755 67888888888888888876 5778888888885 4777776 44 78888888888654 11
Q ss_pred CCCChhhh-cCCCCCCeEEeecCCCCCCCccc-cccccceeEEE
Q 002313 370 SNASLGEL-KQLSRLTTLEVHIPDAQVMPQDL-VFVELERFRIC 411 (937)
Q Consensus 370 ~~~~~~~l-~~l~~L~~L~l~~~~~~~~~~~~-~~~~L~~l~l~ 411 (937)
+.....+ .....|+.|++++|.+..+|..+ .+++|+.|.+.
T Consensus 196 -p~~~~~L~~~~~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~L~ 238 (571)
T 3cvr_A 196 -PAVPVRNHHSEETEIFFRCRENRITHIPENILSLDPTCTIILE 238 (571)
T ss_dssp -CCCC--------CCEEEECCSSCCCCCCGGGGGSCTTEEEECC
T ss_pred -hhHHHhhhcccccceEEecCCCcceecCHHHhcCCCCCEEEee
Confidence 1111111 11122388888888887777654 45555555543
No 114
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.43 E-value=1.1e-12 Score=131.46 Aligned_cols=147 Identities=20% Similarity=0.285 Sum_probs=122.4
Q ss_pred ceeeecCCcccccCChhhhcCCCCccEEEecCCcCcccCc-cccCCCCCCEEEccCCcccCc--ccccCCCCCcEEeccc
Q 002313 235 KLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHSLPS-SLGCLINLRTLSLENCLVVDV--AIIGDLKKLEILSLKH 311 (937)
Q Consensus 235 ~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~lp~-~i~~l~~Lr~L~L~~~~~~~l--~~i~~L~~L~~L~L~~ 311 (937)
+.+++.++. ...+|..+ .++|+.|++++|.+..+|. .|..+++|++|++++|.+..+ ..|.++++|++|++++
T Consensus 14 ~~v~c~~~~-l~~iP~~l---~~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~ 89 (220)
T 2v9t_B 14 NIVDCRGKG-LTEIPTNL---PETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYG 89 (220)
T ss_dssp TEEECTTSC-CSSCCSSC---CTTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCS
T ss_pred CEEEcCCCC-cCcCCCcc---CcCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCC
Confidence 566666655 45677654 3689999999999998865 789999999999999999876 7899999999999999
Q ss_pred CcCcccCcc-cccCccCCEEEecCCCCCcccChhhhcCCCCCcEEEcCCCcccceecCCCCCChhhhcCCCCCCeEEeec
Q 002313 312 SSIEQLPRE-IGQLTCLKLLDLSNCSKLKEIRPNVISNLTRLEELYMGNSFTQWKVEGQSNASLGELKQLSRLTTLEVHI 390 (937)
Q Consensus 312 ~~l~~lp~~-i~~L~~L~~L~l~~~~~l~~lp~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~ 390 (937)
|.++.+|.. +..+++|++|++++| .+..+++..++.+++|++|++++|.+. ......+..+++|+.|++++
T Consensus 90 N~l~~l~~~~f~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N~l~-------~~~~~~~~~l~~L~~L~L~~ 161 (220)
T 2v9t_B 90 NKITELPKSLFEGLFSLQLLLLNAN-KINCLRVDAFQDLHNLNLLSLYDNKLQ-------TIAKGTFSPLRAIQTMHLAQ 161 (220)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCS-------CCCTTTTTTCTTCCEEECCS
T ss_pred CcCCccCHhHccCCCCCCEEECCCC-CCCEeCHHHcCCCCCCCEEECCCCcCC-------EECHHHHhCCCCCCEEEeCC
Confidence 999999876 588999999999995 588887777999999999999999765 23334577788999999988
Q ss_pred CCC
Q 002313 391 PDA 393 (937)
Q Consensus 391 ~~~ 393 (937)
|..
T Consensus 162 N~~ 164 (220)
T 2v9t_B 162 NPF 164 (220)
T ss_dssp SCE
T ss_pred CCc
Confidence 764
No 115
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.42 E-value=1.4e-12 Score=148.66 Aligned_cols=168 Identities=18% Similarity=0.203 Sum_probs=139.1
Q ss_pred cchhhhhhccCCCcEEEccCCCCccCCcccCCCccceeeecCCcccccCChhhhcCCCCccEEEecCCcCcccCccccCC
Q 002313 200 DLKEELDKIDEAPTAISIPFRGIYELPERLGFLKLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHSLPSSLGCL 279 (937)
Q Consensus 200 ~~~~~~~~~~~~l~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~lp~~i~~l 279 (937)
.+..+|....++++.|++++|.+..+| ..+++|++|++.+|.+.. +|. |.+ +|++|++++|.++.+|. .+
T Consensus 70 ~L~~lp~~l~~~L~~L~Ls~N~l~~ip--~~l~~L~~L~Ls~N~l~~-ip~--l~~--~L~~L~Ls~N~l~~lp~---~l 139 (571)
T 3cvr_A 70 NLSSLPDNLPPQITVLEITQNALISLP--ELPASLEYLDACDNRLST-LPE--LPA--SLKHLDVDNNQLTMLPE---LP 139 (571)
T ss_dssp CCSCCCSCCCTTCSEEECCSSCCSCCC--CCCTTCCEEECCSSCCSC-CCC--CCT--TCCEEECCSSCCSCCCC---CC
T ss_pred CCCccCHhHcCCCCEEECcCCCCcccc--cccCCCCEEEccCCCCCC-cch--hhc--CCCEEECCCCcCCCCCC---cC
Confidence 445555555678999999999999999 447899999999998765 777 444 99999999999999987 68
Q ss_pred CCCCEEEccCCcccCcccccCCCCCcEEecccCcCcccCcccccCccCCEEEecCCCCCcccChhhhcCCCCC-------
Q 002313 280 INLRTLSLENCLVVDVAIIGDLKKLEILSLKHSSIEQLPREIGQLTCLKLLDLSNCSKLKEIRPNVISNLTRL------- 352 (937)
Q Consensus 280 ~~Lr~L~L~~~~~~~l~~i~~L~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~l~~L~~L------- 352 (937)
++|++|++++|.++.++. .+++|++|++++|.++.+|. ++ ++|++|++++| .+..+|. +.. +|
T Consensus 140 ~~L~~L~Ls~N~l~~lp~--~l~~L~~L~Ls~N~L~~lp~-l~--~~L~~L~Ls~N-~L~~lp~--~~~--~L~~~~~~L 209 (571)
T 3cvr_A 140 ALLEYINADNNQLTMLPE--LPTSLEVLSVRNNQLTFLPE-LP--ESLEALDVSTN-LLESLPA--VPV--RNHHSEETE 209 (571)
T ss_dssp TTCCEEECCSSCCSCCCC--CCTTCCEEECCSSCCSCCCC-CC--TTCCEEECCSS-CCSSCCC--CC----------CC
T ss_pred ccccEEeCCCCccCcCCC--cCCCcCEEECCCCCCCCcch-hh--CCCCEEECcCC-CCCchhh--HHH--hhhcccccc
Confidence 999999999999988765 68899999999999999998 76 99999999995 5888887 444 67
Q ss_pred cEEEcCCCcccceecCCCCCChhhhcCCCCCCeEEeecCCCCC
Q 002313 353 EELYMGNSFTQWKVEGQSNASLGELKQLSRLTTLEVHIPDAQV 395 (937)
Q Consensus 353 ~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~ 395 (937)
++|++++|.+. ..+..+..+++|+.|++++|.+..
T Consensus 210 ~~L~Ls~N~l~--------~lp~~l~~l~~L~~L~L~~N~l~~ 244 (571)
T 3cvr_A 210 IFFRCRENRIT--------HIPENILSLDPTCTIILEDNPLSS 244 (571)
T ss_dssp EEEECCSSCCC--------CCCGGGGGSCTTEEEECCSSSCCH
T ss_pred eEEecCCCcce--------ecCHHHhcCCCCCEEEeeCCcCCC
Confidence 99999999765 345566778999999999987643
No 116
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.41 E-value=1.5e-12 Score=130.41 Aligned_cols=148 Identities=18% Similarity=0.213 Sum_probs=123.2
Q ss_pred cceeeecCCcccccCChhhhcCCCCccEEEecCCcCcccC--ccccCCCCCCEEEccCCcccCc--ccccCCCCCcEEec
Q 002313 234 LKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHSLP--SSLGCLINLRTLSLENCLVVDV--AIIGDLKKLEILSL 309 (937)
Q Consensus 234 L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~lp--~~i~~l~~Lr~L~L~~~~~~~l--~~i~~L~~L~~L~L 309 (937)
-+++++.++.. ..+|..+ ...+++|++++|.+..++ ..|..+++|++|++++|.++.+ ..|+++.+|++|++
T Consensus 13 ~~~l~~s~n~l-~~iP~~~---~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~L 88 (220)
T 2v70_A 13 GTTVDCSNQKL-NKIPEHI---PQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILL 88 (220)
T ss_dssp TTEEECCSSCC-SSCCSCC---CTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEEC
T ss_pred CCEeEeCCCCc-ccCccCC---CCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEEC
Confidence 35788887764 4678654 456789999999999884 3489999999999999999877 47999999999999
Q ss_pred ccCcCcccCcc-cccCccCCEEEecCCCCCcccChhhhcCCCCCcEEEcCCCcccceecCCCCCChhhhcCCCCCCeEEe
Q 002313 310 KHSSIEQLPRE-IGQLTCLKLLDLSNCSKLKEIRPNVISNLTRLEELYMGNSFTQWKVEGQSNASLGELKQLSRLTTLEV 388 (937)
Q Consensus 310 ~~~~l~~lp~~-i~~L~~L~~L~l~~~~~l~~lp~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l 388 (937)
++|.++.+|.. ++.+++|++|++++| .+..+++..++.+++|++|++++|.+. ......+..+++|+.|++
T Consensus 89 s~N~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~L~~N~l~-------~~~~~~~~~l~~L~~L~L 160 (220)
T 2v70_A 89 TSNRLENVQHKMFKGLESLKTLMLRSN-RITCVGNDSFIGLSSVRLLSLYDNQIT-------TVAPGAFDTLHSLSTLNL 160 (220)
T ss_dssp CSSCCCCCCGGGGTTCSSCCEEECTTS-CCCCBCTTSSTTCTTCSEEECTTSCCC-------CBCTTTTTTCTTCCEEEC
T ss_pred CCCccCccCHhHhcCCcCCCEEECCCC-cCCeECHhHcCCCccCCEEECCCCcCC-------EECHHHhcCCCCCCEEEe
Confidence 99999988864 899999999999995 588886666899999999999999765 233567788899999999
Q ss_pred ecCCC
Q 002313 389 HIPDA 393 (937)
Q Consensus 389 ~~~~~ 393 (937)
++|..
T Consensus 161 ~~N~l 165 (220)
T 2v70_A 161 LANPF 165 (220)
T ss_dssp CSCCE
T ss_pred cCcCC
Confidence 98864
No 117
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.41 E-value=9.9e-14 Score=153.02 Aligned_cols=180 Identities=16% Similarity=0.125 Sum_probs=82.1
Q ss_pred cCCCcEEEccCCCCccC-----Cccc-CCCccceeeecCCc---ccccCChhh------hcCCCCccEEEecCCcCcc--
Q 002313 209 DEAPTAISIPFRGIYEL-----PERL-GFLKLKLFLFFTEN---LSLQIPDPF------FEGMTELRVLDLTGFRFHS-- 271 (937)
Q Consensus 209 ~~~l~~l~l~~~~~~~l-----~~~~-~~~~L~~L~l~~~~---~~~~~~~~~------~~~l~~Lr~L~L~~~~~~~-- 271 (937)
.+++++|++++|.+... +..+ .+++|++|++.+|. +...+|..+ |..+++|++|+|++|.+..
T Consensus 31 ~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~ 110 (386)
T 2ca6_A 31 DDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTA 110 (386)
T ss_dssp CSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTTT
T ss_pred CCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCCHHH
Confidence 34455666665554431 1112 35555555555532 222333322 2455555555555555543
Q ss_pred ---cCccccCCCCCCEEEccCCcccCc------ccccCC---------CCCcEEecccCcCc--ccC---cccccCccCC
Q 002313 272 ---LPSSLGCLINLRTLSLENCLVVDV------AIIGDL---------KKLEILSLKHSSIE--QLP---REIGQLTCLK 328 (937)
Q Consensus 272 ---lp~~i~~l~~Lr~L~L~~~~~~~l------~~i~~L---------~~L~~L~L~~~~l~--~lp---~~i~~L~~L~ 328 (937)
+|..+.++++|++|++++|.+... ..+..+ ++|++|++++|.+. .+| ..+..+++|+
T Consensus 111 ~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~ 190 (386)
T 2ca6_A 111 QEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLH 190 (386)
T ss_dssp HHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCC
T ss_pred HHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhCCCcC
Confidence 444555555555555555554321 112222 55555555555553 233 2444555555
Q ss_pred EEEecCCCCCcc-----cChhhhcCCCCCcEEEcCCCcccceecCCCCCChhhhcCCCCCCeEEeecCC
Q 002313 329 LLDLSNCSKLKE-----IRPNVISNLTRLEELYMGNSFTQWKVEGQSNASLGELKQLSRLTTLEVHIPD 392 (937)
Q Consensus 329 ~L~l~~~~~l~~-----lp~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~ 392 (937)
+|++++|. +.. +.+..+..+++|++|++++|.+.... ....+..+..+++|+.|+++++.
T Consensus 191 ~L~L~~n~-l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g---~~~l~~~l~~~~~L~~L~L~~n~ 255 (386)
T 2ca6_A 191 TVKMVQNG-IRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLG---SSALAIALKSWPNLRELGLNDCL 255 (386)
T ss_dssp EEECCSSC-CCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHH---HHHHHHHGGGCTTCCEEECTTCC
T ss_pred EEECcCCC-CCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHH---HHHHHHHHccCCCcCEEECCCCC
Confidence 55555542 331 11112445555555555555432000 01122334445555555555543
No 118
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.41 E-value=1.5e-12 Score=131.51 Aligned_cols=139 Identities=21% Similarity=0.277 Sum_probs=122.1
Q ss_pred cCcchhhhhhccCCCcEEEccCCCCccCCcc-c-CCCccceeeecCCcccccCChhhhcCCCCccEEEecCCcCcccCcc
Q 002313 198 VADLKEELDKIDEAPTAISIPFRGIYELPER-L-GFLKLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHSLPSS 275 (937)
Q Consensus 198 ~~~~~~~~~~~~~~l~~l~l~~~~~~~l~~~-~-~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~lp~~ 275 (937)
+..+..+|.....+++.|++++|.+..++.. + .+++|++|++.+|.+ ..+|...|..+++|++|+|++|.+..+|..
T Consensus 28 ~~~l~~ip~~~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l-~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~ 106 (229)
T 3e6j_A 28 SKRHASVPAGIPTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQL-GALPVGVFDSLTQLTVLDLGTNQLTVLPSA 106 (229)
T ss_dssp TSCCSSCCSCCCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC-CCCCTTTTTTCTTCCEEECCSSCCCCCCTT
T ss_pred CCCcCccCCCCCCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCC-CCcChhhcccCCCcCEEECCCCcCCccChh
Confidence 3456667777788999999999999988543 4 789999999999986 577878889999999999999999998654
Q ss_pred -ccCCCCCCEEEccCCcccCc-ccccCCCCCcEEecccCcCcccCc-ccccCccCCEEEecCCCC
Q 002313 276 -LGCLINLRTLSLENCLVVDV-AIIGDLKKLEILSLKHSSIEQLPR-EIGQLTCLKLLDLSNCSK 337 (937)
Q Consensus 276 -i~~l~~Lr~L~L~~~~~~~l-~~i~~L~~L~~L~L~~~~l~~lp~-~i~~L~~L~~L~l~~~~~ 337 (937)
|..+.+|++|++++|.+..+ ..+..+.+|++|++++|.++.+|. .+..+++|++|++++|..
T Consensus 107 ~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~ 171 (229)
T 3e6j_A 107 VFDRLVHLKELFMCCNKLTELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPW 171 (229)
T ss_dssp TTTTCTTCCEEECCSSCCCSCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCB
T ss_pred HhCcchhhCeEeccCCcccccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCc
Confidence 78999999999999999988 788999999999999999999985 588999999999999653
No 119
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.39 E-value=2.9e-13 Score=147.55 Aligned_cols=182 Identities=11% Similarity=0.173 Sum_probs=96.1
Q ss_pred ccCCCcEEEccCCCCccCCc-----cc-CCC-ccceeeecCCcccccCChhhhcCC-----CCccEEEecCCcCcccC-c
Q 002313 208 IDEAPTAISIPFRGIYELPE-----RL-GFL-KLKLFLFFTENLSLQIPDPFFEGM-----TELRVLDLTGFRFHSLP-S 274 (937)
Q Consensus 208 ~~~~l~~l~l~~~~~~~l~~-----~~-~~~-~L~~L~l~~~~~~~~~~~~~~~~l-----~~Lr~L~L~~~~~~~lp-~ 274 (937)
..+++++|++++|.+...+. .+ .++ +|++|++++|.+....+.. |..+ ++|++|++++|.+...+ .
T Consensus 20 ~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~-l~~~l~~~~~~L~~L~Ls~n~l~~~~~~ 98 (362)
T 3goz_A 20 IPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDE-LVQILAAIPANVTSLNLSGNFLSYKSSD 98 (362)
T ss_dssp SCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHH-HHHHHHTSCTTCCEEECCSSCGGGSCHH
T ss_pred CCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHH-HHHHHhccCCCccEEECcCCcCChHHHH
Confidence 34457777777777666553 22 455 6777777666554333322 2332 66777777777665442 2
Q ss_pred c----ccCC-CCCCEEEccCCcccCc--cc----ccC-CCCCcEEecccCcCc-----ccCcccccCc-cCCEEEecCCC
Q 002313 275 S----LGCL-INLRTLSLENCLVVDV--AI----IGD-LKKLEILSLKHSSIE-----QLPREIGQLT-CLKLLDLSNCS 336 (937)
Q Consensus 275 ~----i~~l-~~Lr~L~L~~~~~~~l--~~----i~~-L~~L~~L~L~~~~l~-----~lp~~i~~L~-~L~~L~l~~~~ 336 (937)
. +..+ ++|++|++++|.+... .. +.. ..+|++|++++|.+. .++..+..+. +|++|++++|.
T Consensus 99 ~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~ 178 (362)
T 3goz_A 99 ELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNN 178 (362)
T ss_dssp HHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSC
T ss_pred HHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCC
Confidence 2 3333 6677777777766543 12 233 246777777766665 3344444554 67777776643
Q ss_pred CCcccChhh----hcCC-CCCcEEEcCCCcccceecCCC-CCChhhhcC-CCCCCeEEeecCCCCC
Q 002313 337 KLKEIRPNV----ISNL-TRLEELYMGNSFTQWKVEGQS-NASLGELKQ-LSRLTTLEVHIPDAQV 395 (937)
Q Consensus 337 ~l~~lp~~~----l~~L-~~L~~L~l~~~~~~~~~~~~~-~~~~~~l~~-l~~L~~L~l~~~~~~~ 395 (937)
+....... +... ++|++|++++|.+. +.. ......+.. .++|+.|+++++.+..
T Consensus 179 -l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~----~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~ 239 (362)
T 3goz_A 179 -LASKNCAELAKFLASIPASVTSLDLSANLLG----LKSYAELAYIFSSIPNHVVSLNLCLNCLHG 239 (362)
T ss_dssp -GGGSCHHHHHHHHHTSCTTCCEEECTTSCGG----GSCHHHHHHHHHHSCTTCCEEECCSSCCCC
T ss_pred -CchhhHHHHHHHHHhCCCCCCEEECCCCCCC----hhHHHHHHHHHhcCCCCceEEECcCCCCCc
Confidence 44444322 2333 46677776666554 100 011223333 2366666666665443
No 120
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.36 E-value=1.6e-13 Score=151.29 Aligned_cols=114 Identities=11% Similarity=0.079 Sum_probs=60.3
Q ss_pred hhcccccccccccChhh----hhh-cccchhhcccCcEEEeecCCce----EEEEccCCccccccccceecccccccccc
Q 002313 446 LKRTEDLHLDELAGFKN----VVH-ELDDEEGFARLRHLHVHNGPEI----LHILNSDGRVGTFPLLESLFLHNLINLEK 516 (937)
Q Consensus 446 ~~~L~~L~l~~~~~~~~----~~~-~l~~~~~~~~L~~L~l~~~~~~----~~~~~~~~~~~~~p~L~~L~l~~~~~l~~ 516 (937)
+++|+.|+++++..... ..+ .+.. +++|++|+++++.-. ..+ ......+++|++|++++|. +..
T Consensus 186 ~~~L~~L~L~~n~l~~~g~~~l~~~~l~~---~~~L~~L~Ls~n~l~~~g~~~l---~~~l~~~~~L~~L~L~~n~-i~~ 258 (386)
T 2ca6_A 186 HRLLHTVKMVQNGIRPEGIEHLLLEGLAY---CQELKVLDLQDNTFTHLGSSAL---AIALKSWPNLRELGLNDCL-LSA 258 (386)
T ss_dssp CTTCCEEECCSSCCCHHHHHHHHHTTGGG---CTTCCEEECCSSCCHHHHHHHH---HHHGGGCTTCCEEECTTCC-CCH
T ss_pred CCCcCEEECcCCCCCHhHHHHHHHHHhhc---CCCccEEECcCCCCCcHHHHHH---HHHHccCCCcCEEECCCCC-Cch
Confidence 44555566555433211 122 3333 778888888776421 111 1112456777788777763 332
Q ss_pred cccccccCCCCC--ccCCCccEEEEecCCCccc-----ccchhHHHhhccccEEEEccccc
Q 002313 517 VCDGKVRLNEDD--KSFSNLRIIKVEGCHRVKH-----LFPFSLVKNLLQLQKVKVTDCTN 570 (937)
Q Consensus 517 ~~~~~~~~~~~~--~~l~~L~~L~l~~C~~L~~-----l~~~~~~~~l~~L~~L~i~~c~~ 570 (937)
.....++ ... +.+++|+.|++++|. ++. +|. ....++++|++|++++|+-
T Consensus 259 ~~~~~l~--~~l~~~~~~~L~~L~L~~n~-i~~~g~~~l~~-~l~~~l~~L~~L~l~~N~l 315 (386)
T 2ca6_A 259 RGAAAVV--DAFSKLENIGLQTLRLQYNE-IELDAVRTLKT-VIDEKMPDLLFLELNGNRF 315 (386)
T ss_dssp HHHHHHH--HHHHTCSSCCCCEEECCSSC-CBHHHHHHHHH-HHHHHCTTCCEEECTTSBS
T ss_pred hhHHHHH--HHHhhccCCCeEEEECcCCc-CCHHHHHHHHH-HHHhcCCCceEEEccCCcC
Confidence 2100011 001 236888888888854 554 442 2225678888888888653
No 121
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.35 E-value=1.6e-12 Score=121.62 Aligned_cols=105 Identities=23% Similarity=0.240 Sum_probs=59.9
Q ss_pred CCccEEEecCCcCc--ccCccccCCCCCCEEEccCCcccCcccccCCCCCcEEecccCcCcc-cCcccccCccCCEEEec
Q 002313 257 TELRVLDLTGFRFH--SLPSSLGCLINLRTLSLENCLVVDVAIIGDLKKLEILSLKHSSIEQ-LPREIGQLTCLKLLDLS 333 (937)
Q Consensus 257 ~~Lr~L~L~~~~~~--~lp~~i~~l~~Lr~L~L~~~~~~~l~~i~~L~~L~~L~L~~~~l~~-lp~~i~~L~~L~~L~l~ 333 (937)
++|+.|++++|.+. .+|..++.+++|++|++++|.+..+..++++++|++|++++|.++. +|..++.+++|++|+++
T Consensus 17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ls 96 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSIANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLS 96 (149)
T ss_dssp GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCCTTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEECT
T ss_pred ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCchhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEECC
Confidence 45566666666655 5555555666666666666655555555566666666666666555 45555556666666666
Q ss_pred CCCCCcccCh-hhhcCCCCCcEEEcCCCcc
Q 002313 334 NCSKLKEIRP-NVISNLTRLEELYMGNSFT 362 (937)
Q Consensus 334 ~~~~l~~lp~-~~l~~L~~L~~L~l~~~~~ 362 (937)
+|. +..++. ..++.+++|++|++++|.+
T Consensus 97 ~N~-i~~~~~~~~~~~l~~L~~L~l~~N~l 125 (149)
T 2je0_A 97 GNK-IKDLSTIEPLKKLENLKSLDLFNCEV 125 (149)
T ss_dssp TSC-CCSHHHHGGGGGCTTCCEEECTTCGG
T ss_pred CCc-CCChHHHHHHhhCCCCCEEeCcCCcc
Confidence 533 444431 2255666666666666544
No 122
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.35 E-value=1.3e-12 Score=122.13 Aligned_cols=124 Identities=23% Similarity=0.290 Sum_probs=89.5
Q ss_pred CccceeeecCCccc-ccCChhhhcCCCCccEEEecCCcCcccCccccCCCCCCEEEccCCcccC-c-ccccCCCCCcEEe
Q 002313 232 LKLKLFLFFTENLS-LQIPDPFFEGMTELRVLDLTGFRFHSLPSSLGCLINLRTLSLENCLVVD-V-AIIGDLKKLEILS 308 (937)
Q Consensus 232 ~~L~~L~l~~~~~~-~~~~~~~~~~l~~Lr~L~L~~~~~~~lp~~i~~l~~Lr~L~L~~~~~~~-l-~~i~~L~~L~~L~ 308 (937)
+++++|++.+|... +.+|.. +..+++|++|++++|.+..+ ..++.+++|++|++++|.+.. + ..++++++|++|+
T Consensus 17 ~~l~~L~l~~n~l~~~~~~~~-~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ 94 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKLEGL-TDEFEELEFLSTINVGLTSI-ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLN 94 (149)
T ss_dssp GGCSEEECTTCBCBTTBCCSC-CTTCTTCCEEECTTSCCCCC-TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEE
T ss_pred ccCeEEEccCCcCChhHHHHH-HhhcCCCcEEECcCCCCCCc-hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEE
Confidence 45666666666554 355543 47778888888888887776 567778888888888888776 4 4455688888888
Q ss_pred cccCcCcccC--cccccCccCCEEEecCCCCCcccCh---hhhcCCCCCcEEEcC
Q 002313 309 LKHSSIEQLP--REIGQLTCLKLLDLSNCSKLKEIRP---NVISNLTRLEELYMG 358 (937)
Q Consensus 309 L~~~~l~~lp--~~i~~L~~L~~L~l~~~~~l~~lp~---~~l~~L~~L~~L~l~ 358 (937)
+++|.++.+| ..++.+++|++|++++| .+..++. ..++.+++|++|+++
T Consensus 95 ls~N~i~~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 95 LSGNKIKDLSTIEPLKKLENLKSLDLFNC-EVTNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp CTTSCCCSHHHHGGGGGCTTCCEEECTTC-GGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred CCCCcCCChHHHHHHhhCCCCCEEeCcCC-cccchHHHHHHHHHHCCCcccccCC
Confidence 8888887765 67788888888888885 4666665 457778888887764
No 123
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.35 E-value=2.3e-12 Score=123.39 Aligned_cols=126 Identities=22% Similarity=0.306 Sum_probs=63.6
Q ss_pred ccceeeecCCccc-ccCChhhhcCCCCccEEEecCCcCcccCccccCCCCCCEEEccCCcccC-c-ccccCCCCCcEEec
Q 002313 233 KLKLFLFFTENLS-LQIPDPFFEGMTELRVLDLTGFRFHSLPSSLGCLINLRTLSLENCLVVD-V-AIIGDLKKLEILSL 309 (937)
Q Consensus 233 ~L~~L~l~~~~~~-~~~~~~~~~~l~~Lr~L~L~~~~~~~lp~~i~~l~~Lr~L~L~~~~~~~-l-~~i~~L~~L~~L~L 309 (937)
+|++|++.+|.+. ..+|.. +..+++|++|++++|.+..+ ..++.+++|++|++++|.+.. + ..++++++|++|++
T Consensus 25 ~L~~L~l~~n~l~~~~i~~~-~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 102 (168)
T 2ell_A 25 AVRELVLDNCKSNDGKIEGL-TAEFVNLEFLSLINVGLISV-SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNL 102 (168)
T ss_dssp SCSEEECCSCBCBTTBCSSC-CGGGGGCCEEEEESSCCCCC-SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEEC
T ss_pred cCCEEECCCCCCChhhHHHH-HHhCCCCCEEeCcCCCCCCh-hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEec
Confidence 3444444444332 233332 34455555555555555544 445555555555555555554 3 23334555555555
Q ss_pred ccCcCcccC--cccccCccCCEEEecCCCCCcccCh---hhhcCCCCCcEEEcCCCc
Q 002313 310 KHSSIEQLP--REIGQLTCLKLLDLSNCSKLKEIRP---NVISNLTRLEELYMGNSF 361 (937)
Q Consensus 310 ~~~~l~~lp--~~i~~L~~L~~L~l~~~~~l~~lp~---~~l~~L~~L~~L~l~~~~ 361 (937)
++|.++.+| ..++.+++|++|++++| .+..+|. ..++.+++|++|++++|.
T Consensus 103 s~N~l~~~~~~~~l~~l~~L~~L~l~~N-~l~~~~~~~~~~~~~l~~L~~L~l~~n~ 158 (168)
T 2ell_A 103 SGNKLKDISTLEPLKKLECLKSLDLFNC-EVTNLNDYRESVFKLLPQLTYLDGYDRE 158 (168)
T ss_dssp BSSSCCSSGGGGGGSSCSCCCEEECCSS-GGGTSTTHHHHHHTTCSSCCEETTEETT
T ss_pred cCCccCcchhHHHHhcCCCCCEEEeeCC-cCcchHHHHHHHHHhCccCcEecCCCCC
Confidence 555555544 45555555555555553 2444444 235555566666555553
No 124
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.33 E-value=2.1e-14 Score=164.70 Aligned_cols=189 Identities=20% Similarity=0.242 Sum_probs=135.7
Q ss_pred cCCCcEEEccCCCCccCCccc-CCCccceeeecCCc-------------ccccCChhhhcCCCCccEEE-ecCCcCcccC
Q 002313 209 DEAPTAISIPFRGIYELPERL-GFLKLKLFLFFTEN-------------LSLQIPDPFFEGMTELRVLD-LTGFRFHSLP 273 (937)
Q Consensus 209 ~~~l~~l~l~~~~~~~l~~~~-~~~~L~~L~l~~~~-------------~~~~~~~~~~~~l~~Lr~L~-L~~~~~~~lp 273 (937)
.+.++++++++|.+..+|..+ .+++|+.|++.++. ..+ .++..++.+++|+.|+ ++.+.+..++
T Consensus 348 ~~~L~~L~Ls~n~L~~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~-~~~~~l~~l~~L~~L~~l~~n~~~~L~ 426 (567)
T 1dce_A 348 DEQLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLL-YEKETLQYFSTLKAVDPMRAAYLDDLR 426 (567)
T ss_dssp TTTSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGG-GHHHHHHHHHHHHHHCGGGHHHHHHHH
T ss_pred CccceeccCChhhHHhhHHHHHHHHHHHHhccccchhhhhHHHHHHhccccc-CCHHHHHHHHhcccCcchhhcccchhh
Confidence 345667778888888888877 57888888875543 222 2333457777777777 5544333222
Q ss_pred c------cccC--CCCCCEEEccCCcccCcccccCCCCCcEEecccCcCcccCcccccCccCCEEEecCCCCCcccChhh
Q 002313 274 S------SLGC--LINLRTLSLENCLVVDVAIIGDLKKLEILSLKHSSIEQLPREIGQLTCLKLLDLSNCSKLKEIRPNV 345 (937)
Q Consensus 274 ~------~i~~--l~~Lr~L~L~~~~~~~l~~i~~L~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~ 345 (937)
. .+.. ...|++|++++|.++.++.++.+++|++|++++|.++.+|..++++++|++|++++| .++.+| .
T Consensus 427 ~l~l~~n~i~~l~~~~L~~L~Ls~n~l~~lp~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N-~l~~lp-~- 503 (567)
T 1dce_A 427 SKFLLENSVLKMEYADVRVLHLAHKDLTVLCHLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDN-ALENVD-G- 503 (567)
T ss_dssp HHHHHHHHHHHHHHTTCSEEECTTSCCSSCCCGGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSS-CCCCCG-G-
T ss_pred hhhhhcccccccCccCceEEEecCCCCCCCcCccccccCcEeecCcccccccchhhhcCCCCCEEECCCC-CCCCCc-c-
Confidence 1 1111 125889999999888886789999999999999999899988999999999999984 477787 4
Q ss_pred hcCCCCCcEEEcCCCcccceecCCCCCC-hhhhcCCCCCCeEEeecCCCCCCCccc-----ccccccee
Q 002313 346 ISNLTRLEELYMGNSFTQWKVEGQSNAS-LGELKQLSRLTTLEVHIPDAQVMPQDL-----VFVELERF 408 (937)
Q Consensus 346 l~~L~~L~~L~l~~~~~~~~~~~~~~~~-~~~l~~l~~L~~L~l~~~~~~~~~~~~-----~~~~L~~l 408 (937)
++++++|++|++++|.+. ... +..+..+++|+.|++++|.+...++.. .+++|+.|
T Consensus 504 l~~l~~L~~L~Ls~N~l~-------~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L 565 (567)
T 1dce_A 504 VANLPRLQELLLCNNRLQ-------QSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSI 565 (567)
T ss_dssp GTTCSSCCEEECCSSCCC-------SSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEE
T ss_pred cCCCCCCcEEECCCCCCC-------CCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCcc
Confidence 889999999999888765 222 677888889999999988877766543 24555554
No 125
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.31 E-value=8.7e-12 Score=121.96 Aligned_cols=104 Identities=19% Similarity=0.264 Sum_probs=58.1
Q ss_pred CccEEEecCCcCcccCcc--ccCCCCCCEEEccCCcccCc--ccccCCCCCcEEecccCcCcccCcc-cccCccCCEEEe
Q 002313 258 ELRVLDLTGFRFHSLPSS--LGCLINLRTLSLENCLVVDV--AIIGDLKKLEILSLKHSSIEQLPRE-IGQLTCLKLLDL 332 (937)
Q Consensus 258 ~Lr~L~L~~~~~~~lp~~--i~~l~~Lr~L~L~~~~~~~l--~~i~~L~~L~~L~L~~~~l~~lp~~-i~~L~~L~~L~l 332 (937)
+|++|++++|.+..+|.. |+.+++|++|++++|.++.+ ..++++.+|++|++++|.++.+|.. ++.+++|++|++
T Consensus 30 ~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 109 (192)
T 1w8a_A 30 HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNL 109 (192)
T ss_dssp TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEEC
T ss_pred CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCccCHHHhcCCCCCCEEEC
Confidence 455555555555555432 55555555555555555544 3455556666666666655555432 556666666666
Q ss_pred cCCCCCcccChhhhcCCCCCcEEEcCCCcc
Q 002313 333 SNCSKLKEIRPNVISNLTRLEELYMGNSFT 362 (937)
Q Consensus 333 ~~~~~l~~lp~~~l~~L~~L~~L~l~~~~~ 362 (937)
++| .+..+++..++.+++|++|++++|.+
T Consensus 110 ~~N-~l~~~~~~~~~~l~~L~~L~L~~N~l 138 (192)
T 1w8a_A 110 YDN-QISCVMPGSFEHLNSLTSLNLASNPF 138 (192)
T ss_dssp CSS-CCCEECTTSSTTCTTCCEEECTTCCB
T ss_pred CCC-cCCeeCHHHhhcCCCCCEEEeCCCCc
Confidence 663 34444444456666666666666644
No 126
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.30 E-value=1.4e-11 Score=120.48 Aligned_cols=123 Identities=19% Similarity=0.294 Sum_probs=91.8
Q ss_pred eeeecCCcccccCChhhhcCCCCccEEEecCCcCcccCccccCCCCCCEEEccCCcccCc--ccccCCCCCcEEecccCc
Q 002313 236 LFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHSLPSSLGCLINLRTLSLENCLVVDV--AIIGDLKKLEILSLKHSS 313 (937)
Q Consensus 236 ~L~l~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~lp~~i~~l~~Lr~L~L~~~~~~~l--~~i~~L~~L~~L~L~~~~ 313 (937)
++++.++. ...+|..+ .++|++|++++|.+..+|..|.++.+|++|++++|.++.+ ..|.++.+|++|++++|.
T Consensus 14 ~l~~~~~~-l~~ip~~~---~~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~ 89 (193)
T 2wfh_A 14 VVRCSNKG-LKVLPKGI---PRDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNR 89 (193)
T ss_dssp EEECTTSC-CSSCCSCC---CTTCCEEECCSSCCCSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred EEEcCCCC-CCcCCCCC---CCCCCEEECCCCcCchhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCc
Confidence 44444443 23455443 2467888888888888887888888888888888888766 457888888888888888
Q ss_pred CcccCc-ccccCccCCEEEecCCCCCcccChhhhcCCCCCcEEEcCCCccc
Q 002313 314 IEQLPR-EIGQLTCLKLLDLSNCSKLKEIRPNVISNLTRLEELYMGNSFTQ 363 (937)
Q Consensus 314 l~~lp~-~i~~L~~L~~L~l~~~~~l~~lp~~~l~~L~~L~~L~l~~~~~~ 363 (937)
++.+|+ .++.+++|++|++++| .+..+|.+.+..+++|++|++++|.+.
T Consensus 90 l~~i~~~~f~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N~~~ 139 (193)
T 2wfh_A 90 LRCIPPRTFDGLKSLRLLSLHGN-DISVVPEGAFNDLSALSHLAIGANPLY 139 (193)
T ss_dssp CCBCCTTTTTTCTTCCEEECCSS-CCCBCCTTTTTTCTTCCEEECCSSCEE
T ss_pred cCEeCHHHhCCCCCCCEEECCCC-CCCeeChhhhhcCccccEEEeCCCCee
Confidence 887764 5788888888888884 477788776788888888888887654
No 127
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.30 E-value=6e-12 Score=121.31 Aligned_cols=134 Identities=17% Similarity=0.271 Sum_probs=87.0
Q ss_pred hcCCCCccEEEecCCcCcccCccccCCC-CCCEEEccCCcccCcccccCCCCCcEEecccCcCcccCccc-ccCccCCEE
Q 002313 253 FEGMTELRVLDLTGFRFHSLPSSLGCLI-NLRTLSLENCLVVDVAIIGDLKKLEILSLKHSSIEQLPREI-GQLTCLKLL 330 (937)
Q Consensus 253 ~~~l~~Lr~L~L~~~~~~~lp~~i~~l~-~Lr~L~L~~~~~~~l~~i~~L~~L~~L~L~~~~l~~lp~~i-~~L~~L~~L 330 (937)
|..+.+|++|++++|.+..+|. +..+. +|++|++++|.++.+..++.+++|++|++++|.++.+|+.+ +.+++|++|
T Consensus 15 ~~~~~~L~~L~l~~n~l~~i~~-~~~~~~~L~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 93 (176)
T 1a9n_A 15 YTNAVRDRELDLRGYKIPVIEN-LGATLDQFDAIDFSDNEIRKLDGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTEL 93 (176)
T ss_dssp EECTTSCEEEECTTSCCCSCCC-GGGGTTCCSEEECCSSCCCEECCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEE
T ss_pred cCCcCCceEEEeeCCCCchhHH-hhhcCCCCCEEECCCCCCCcccccccCCCCCEEECCCCcccccCcchhhcCCCCCEE
Confidence 3556677777777777776654 44444 77777777777766667777777777777777777777554 777777777
Q ss_pred EecCCCCCcccCh-hhhcCCCCCcEEEcCCCcccceecCCCCCChhhhcCCCCCCeEEeecCC
Q 002313 331 DLSNCSKLKEIRP-NVISNLTRLEELYMGNSFTQWKVEGQSNASLGELKQLSRLTTLEVHIPD 392 (937)
Q Consensus 331 ~l~~~~~l~~lp~-~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~ 392 (937)
++++| .+..+|. ..++.+++|++|++++|.+. .........+..+++|+.|+++.+.
T Consensus 94 ~L~~N-~i~~~~~~~~l~~l~~L~~L~l~~N~i~----~~~~~~~~~~~~l~~L~~Ld~~~n~ 151 (176)
T 1a9n_A 94 ILTNN-SLVELGDLDPLASLKSLTYLCILRNPVT----NKKHYRLYVIYKVPQVRVLDFQKVK 151 (176)
T ss_dssp ECCSC-CCCCGGGGGGGGGCTTCCEEECCSSGGG----GSTTHHHHHHHHCTTCSEETTEECC
T ss_pred ECCCC-cCCcchhhHhhhcCCCCCEEEecCCCCC----CcHhHHHHHHHHCCccceeCCCcCC
Confidence 77774 3666664 23667777777777777653 1100001135666777777776654
No 128
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.29 E-value=1.2e-11 Score=120.91 Aligned_cols=123 Identities=21% Similarity=0.356 Sum_probs=81.6
Q ss_pred cEEEccCCCCccCCcccCCCccceeeecCCcccccCChhhhcCCCCccEEEecCCcCccc-CccccCCCCCCEEEccCCc
Q 002313 213 TAISIPFRGIYELPERLGFLKLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHSL-PSSLGCLINLRTLSLENCL 291 (937)
Q Consensus 213 ~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~l-p~~i~~l~~Lr~L~L~~~~ 291 (937)
+.++++++.+..+|..+. .++++|++.+|.+....+..+|..+++|++|+|++|.++.+ |..|+.+.+|++|++++|.
T Consensus 11 ~~l~~s~~~l~~ip~~~~-~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~ 89 (192)
T 1w8a_A 11 TTVDCTGRGLKEIPRDIP-LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENK 89 (192)
T ss_dssp TEEECTTSCCSSCCSCCC-TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCC
T ss_pred CEEEcCCCCcCcCccCCC-CCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCc
Confidence 566777777777766552 36777777776654333333456777777777777777665 5667777777777777777
Q ss_pred ccCc--ccccCCCCCcEEecccCcCccc-CcccccCccCCEEEecCCC
Q 002313 292 VVDV--AIIGDLKKLEILSLKHSSIEQL-PREIGQLTCLKLLDLSNCS 336 (937)
Q Consensus 292 ~~~l--~~i~~L~~L~~L~L~~~~l~~l-p~~i~~L~~L~~L~l~~~~ 336 (937)
++.+ ..++.+++|++|++++|.++.+ |..++.+++|++|++++|.
T Consensus 90 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~ 137 (192)
T 1w8a_A 90 IKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNP 137 (192)
T ss_dssp CCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCC
T ss_pred CCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCC
Confidence 6655 3466777777777777777655 4566777777777777654
No 129
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.27 E-value=5.7e-12 Score=149.43 Aligned_cols=150 Identities=20% Similarity=0.226 Sum_probs=98.5
Q ss_pred CCCcEEEccCCCCccCCccc-CCCccceeeecC-----CcccccCChhhhcCCCCccEEEecCCcCcccCccccCCCCCC
Q 002313 210 EAPTAISIPFRGIYELPERL-GFLKLKLFLFFT-----ENLSLQIPDPFFEGMTELRVLDLTGFRFHSLPSSLGCLINLR 283 (937)
Q Consensus 210 ~~l~~l~l~~~~~~~l~~~~-~~~~L~~L~l~~-----~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~lp~~i~~l~~Lr 283 (937)
.+++.+++.++.+...+... ...+|+.+.+.. +.. .++...|..+..|++|+|++|.+..+|..+.++.+|+
T Consensus 173 ~~~~~l~L~~n~~~~~~~~~l~~l~Ls~~~i~~~~~~~n~~--~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~l~~L~ 250 (727)
T 4b8c_D 173 PLTPKIELFANGKDEANQALLQHKKLSQYSIDEDDDIENRM--VMPKDSKYDDQLWHALDLSNLQIFNISANIFKYDFLT 250 (727)
T ss_dssp ---------------------------------------------------CCCCCCEEECTTSCCSCCCGGGGGCCSCS
T ss_pred CccceEEeeCCCCCcchhhHhhcCccCcccccCccccccce--ecChhhhccCCCCcEEECCCCCCCCCChhhcCCCCCC
Confidence 45788888888777665443 344444444322 222 2455667899999999999999999999999999999
Q ss_pred EEEccCCcccCc-ccccCCCCCcEEecccCcCcccCcccccCccCCEEEecCCCCCcccChhhhcCCCCCcEEEcCCCcc
Q 002313 284 TLSLENCLVVDV-AIIGDLKKLEILSLKHSSIEQLPREIGQLTCLKLLDLSNCSKLKEIRPNVISNLTRLEELYMGNSFT 362 (937)
Q Consensus 284 ~L~L~~~~~~~l-~~i~~L~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~l~~L~~L~~L~l~~~~~ 362 (937)
+|+|++|.++.+ ..|+++.+|++|+|++|.++.+|..+++|++|++|++++| .+..+|.. +++|++|++|++++|.+
T Consensus 251 ~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N-~l~~lp~~-~~~l~~L~~L~L~~N~l 328 (727)
T 4b8c_D 251 RLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLTSLPAELGSCFQLKYFYFFDN-MVTTLPWE-FGNLCNLQFLGVEGNPL 328 (727)
T ss_dssp CCBCTTSCCSCCCGGGGGGTTCCEEECTTSCCSSCCSSGGGGTTCSEEECCSS-CCCCCCSS-TTSCTTCCCEECTTSCC
T ss_pred EEEeeCCcCcccChhhhCCCCCCEEeCcCCcCCccChhhcCCCCCCEEECCCC-CCCccChh-hhcCCCccEEeCCCCcc
Confidence 999999999877 6799999999999999999999999999999999999995 58899987 89999999999999876
Q ss_pred c
Q 002313 363 Q 363 (937)
Q Consensus 363 ~ 363 (937)
.
T Consensus 329 ~ 329 (727)
T 4b8c_D 329 E 329 (727)
T ss_dssp C
T ss_pred C
Confidence 5
No 130
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.26 E-value=1.6e-12 Score=141.69 Aligned_cols=126 Identities=14% Similarity=0.194 Sum_probs=61.2
Q ss_pred cceeeecCCcccccCCh----hhhcCCC-CccEEEecCCcCccc-CccccCC-----CCCCEEEccCCcccCc--cc---
Q 002313 234 LKLFLFFTENLSLQIPD----PFFEGMT-ELRVLDLTGFRFHSL-PSSLGCL-----INLRTLSLENCLVVDV--AI--- 297 (937)
Q Consensus 234 L~~L~l~~~~~~~~~~~----~~~~~l~-~Lr~L~L~~~~~~~l-p~~i~~l-----~~Lr~L~L~~~~~~~l--~~--- 297 (937)
|++|++++|.+. ..+. ..|..++ +|++|+|++|.+... +..+..+ ++|++|++++|.+... ..
T Consensus 24 L~~L~Ls~n~l~-~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~ 102 (362)
T 3goz_A 24 VTSLDLSLNNLY-SISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELVK 102 (362)
T ss_dssp CCEEECTTSCGG-GSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHH
T ss_pred ceEEEccCCCCC-hHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHHHHHH
Confidence 666666665533 2222 3345555 566666666665543 3334433 5666666666655432 21
Q ss_pred -ccCC-CCCcEEecccCcCcccCc-c----ccc-CccCCEEEecCCCCCcc-----cChhhhcCCC-CCcEEEcCCCcc
Q 002313 298 -IGDL-KKLEILSLKHSSIEQLPR-E----IGQ-LTCLKLLDLSNCSKLKE-----IRPNVISNLT-RLEELYMGNSFT 362 (937)
Q Consensus 298 -i~~L-~~L~~L~L~~~~l~~lp~-~----i~~-L~~L~~L~l~~~~~l~~-----lp~~~l~~L~-~L~~L~l~~~~~ 362 (937)
+..+ ++|++|++++|.++..+. . +.. .++|++|++++|. +.. ++.. +..+. +|++|++++|.+
T Consensus 103 ~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~-l~~~~~~~l~~~-l~~~~~~L~~L~Ls~n~l 179 (362)
T 3goz_A 103 TLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGND-LGIKSSDELIQI-LAAIPANVNSLNLRGNNL 179 (362)
T ss_dssp HHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSC-GGGSCHHHHHHH-HHTSCTTCCEEECTTSCG
T ss_pred HHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCc-CCHHHHHHHHHH-HhcCCccccEeeecCCCC
Confidence 3333 566666666665554432 1 222 1456666666532 332 1111 23333 566666665544
No 131
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.25 E-value=3.8e-11 Score=117.29 Aligned_cols=121 Identities=21% Similarity=0.335 Sum_probs=107.2
Q ss_pred cEEEccCCCCccCCcccCCCccceeeecCCcccccCChhhhcCCCCccEEEecCCcCcccC-ccccCCCCCCEEEccCCc
Q 002313 213 TAISIPFRGIYELPERLGFLKLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHSLP-SSLGCLINLRTLSLENCL 291 (937)
Q Consensus 213 ~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~lp-~~i~~l~~Lr~L~L~~~~ 291 (937)
+.++.+++.+..+|..+ .+++++|++.+|.+. .+|. .|..+++|++|++++|.++.++ ..|..+++|++|++++|.
T Consensus 13 ~~l~~~~~~l~~ip~~~-~~~l~~L~L~~n~i~-~ip~-~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~ 89 (193)
T 2wfh_A 13 TVVRCSNKGLKVLPKGI-PRDVTELYLDGNQFT-LVPK-ELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNR 89 (193)
T ss_dssp TEEECTTSCCSSCCSCC-CTTCCEEECCSSCCC-SCCG-GGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred CEEEcCCCCCCcCCCCC-CCCCCEEECCCCcCc-hhHH-HhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCc
Confidence 57888999999998766 468999999998765 7774 5799999999999999999885 569999999999999999
Q ss_pred ccCc--ccccCCCCCcEEecccCcCcccCcc-cccCccCCEEEecCCC
Q 002313 292 VVDV--AIIGDLKKLEILSLKHSSIEQLPRE-IGQLTCLKLLDLSNCS 336 (937)
Q Consensus 292 ~~~l--~~i~~L~~L~~L~L~~~~l~~lp~~-i~~L~~L~~L~l~~~~ 336 (937)
++.+ ..|..+++|++|++++|.++.+|.. +..+++|++|++++|.
T Consensus 90 l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~ 137 (193)
T 2wfh_A 90 LRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANP 137 (193)
T ss_dssp CCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSC
T ss_pred cCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCC
Confidence 9877 4699999999999999999999874 8899999999999865
No 132
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.24 E-value=1.3e-11 Score=118.96 Aligned_cols=128 Identities=16% Similarity=0.181 Sum_probs=78.0
Q ss_pred CCCccceeeecCCcccccCChhhhcCCCCccEEEecCCcCcccCccccCCCCCCEEEccCCcccCc-cc-ccCCCCCcEE
Q 002313 230 GFLKLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHSLPSSLGCLINLRTLSLENCLVVDV-AI-IGDLKKLEIL 307 (937)
Q Consensus 230 ~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~lp~~i~~l~~Lr~L~L~~~~~~~l-~~-i~~L~~L~~L 307 (937)
.+.+|++|++.+|.+. .+|. +....++|++|++++|.+..+ ..++.+++|++|++++|.++.+ +. ++.+++|++|
T Consensus 17 ~~~~L~~L~l~~n~l~-~i~~-~~~~~~~L~~L~Ls~N~l~~~-~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 93 (176)
T 1a9n_A 17 NAVRDRELDLRGYKIP-VIEN-LGATLDQFDAIDFSDNEIRKL-DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTEL 93 (176)
T ss_dssp CTTSCEEEECTTSCCC-SCCC-GGGGTTCCSEEECCSSCCCEE-CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEE
T ss_pred CcCCceEEEeeCCCCc-hhHH-hhhcCCCCCEEECCCCCCCcc-cccccCCCCCEEECCCCcccccCcchhhcCCCCCEE
Confidence 4455556666555433 3332 222223677777777766666 4566667777777777766655 22 3666777777
Q ss_pred ecccCcCcccCc--ccccCccCCEEEecCCCCCcccChh---hhcCCCCCcEEEcCCCc
Q 002313 308 SLKHSSIEQLPR--EIGQLTCLKLLDLSNCSKLKEIRPN---VISNLTRLEELYMGNSF 361 (937)
Q Consensus 308 ~L~~~~l~~lp~--~i~~L~~L~~L~l~~~~~l~~lp~~---~l~~L~~L~~L~l~~~~ 361 (937)
++++|.+..+|. .++.+++|++|++++|. +..+|.. .++.+++|+.|+++++.
T Consensus 94 ~L~~N~i~~~~~~~~l~~l~~L~~L~l~~N~-i~~~~~~~~~~~~~l~~L~~Ld~~~n~ 151 (176)
T 1a9n_A 94 ILTNNSLVELGDLDPLASLKSLTYLCILRNP-VTNKKHYRLYVIYKVPQVRVLDFQKVK 151 (176)
T ss_dssp ECCSCCCCCGGGGGGGGGCTTCCEEECCSSG-GGGSTTHHHHHHHHCTTCSEETTEECC
T ss_pred ECCCCcCCcchhhHhhhcCCCCCEEEecCCC-CCCcHhHHHHHHHHCCccceeCCCcCC
Confidence 777777766665 66677777777777643 5555543 36667777777766654
No 133
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.21 E-value=8.5e-11 Score=113.39 Aligned_cols=105 Identities=28% Similarity=0.437 Sum_probs=54.3
Q ss_pred CCccEEEecCCcCcccCc-cccCCCCCCEEEccCCcccCc--ccccCCCCCcEEecccCcCcccCcc-cccCccCCEEEe
Q 002313 257 TELRVLDLTGFRFHSLPS-SLGCLINLRTLSLENCLVVDV--AIIGDLKKLEILSLKHSSIEQLPRE-IGQLTCLKLLDL 332 (937)
Q Consensus 257 ~~Lr~L~L~~~~~~~lp~-~i~~l~~Lr~L~L~~~~~~~l--~~i~~L~~L~~L~L~~~~l~~lp~~-i~~L~~L~~L~l 332 (937)
++|++|++++|.+..+|. .++.+++|++|++++|.++.+ ..++.+++|++|++++|.++.+|.. ++.+++|++|++
T Consensus 28 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l 107 (177)
T 2o6r_A 28 SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELAL 107 (177)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCCccccCHHHhhCCcccCEEEC
Confidence 345555555555554432 234555555555555555444 2245555555555555555555543 455555555555
Q ss_pred cCCCCCcccChhhhcCCCCCcEEEcCCCcc
Q 002313 333 SNCSKLKEIRPNVISNLTRLEELYMGNSFT 362 (937)
Q Consensus 333 ~~~~~l~~lp~~~l~~L~~L~~L~l~~~~~ 362 (937)
++| .+..+|...++.+++|++|++++|.+
T Consensus 108 ~~N-~l~~~~~~~~~~l~~L~~L~l~~N~~ 136 (177)
T 2o6r_A 108 DTN-QLKSVPDGIFDRLTSLQKIWLHTNPW 136 (177)
T ss_dssp CSS-CCSCCCTTTTTTCTTCCEEECCSSCB
T ss_pred cCC-cceEeCHHHhcCCcccCEEEecCCCe
Confidence 553 35555554445555666666655543
No 134
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.17 E-value=1.1e-12 Score=129.35 Aligned_cols=108 Identities=25% Similarity=0.334 Sum_probs=80.7
Q ss_pred hcCCCCccEEEecCCcCcccCccccCCCCCCEEEccCCcccCc-ccccCCCCCcEEecccCcCcccCcccccCccCCEEE
Q 002313 253 FEGMTELRVLDLTGFRFHSLPSSLGCLINLRTLSLENCLVVDV-AIIGDLKKLEILSLKHSSIEQLPREIGQLTCLKLLD 331 (937)
Q Consensus 253 ~~~l~~Lr~L~L~~~~~~~lp~~i~~l~~Lr~L~L~~~~~~~l-~~i~~L~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~ 331 (937)
|..+++|++|++++|.+..+| .+.++++|++|++++|.+..+ ..+..+++|++|++++|.++.+| .++++++|++|+
T Consensus 44 ~~~l~~L~~L~ls~n~l~~l~-~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L~~N~l~~l~-~~~~l~~L~~L~ 121 (198)
T 1ds9_A 44 LSTLKACKHLALSTNNIEKIS-SLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYNQIASLS-GIEKLVNLRVLY 121 (198)
T ss_dssp HHHTTTCSEEECSEEEESCCC-CHHHHTTCCEEEEEEEEECSCSSHHHHHHHCSEEEEEEEECCCHH-HHHHHHHSSEEE
T ss_pred HhcCCCCCEEECCCCCCcccc-ccccCCCCCEEECCCCCcccccchhhcCCcCCEEECcCCcCCcCC-ccccCCCCCEEE
Confidence 577788888888888877777 777788888888888877766 44556678888888888877776 577788888888
Q ss_pred ecCCCCCcccCh-hhhcCCCCCcEEEcCCCccc
Q 002313 332 LSNCSKLKEIRP-NVISNLTRLEELYMGNSFTQ 363 (937)
Q Consensus 332 l~~~~~l~~lp~-~~l~~L~~L~~L~l~~~~~~ 363 (937)
+++| .+..++. ..++.+++|++|++++|.+.
T Consensus 122 l~~N-~i~~~~~~~~l~~l~~L~~L~l~~N~l~ 153 (198)
T 1ds9_A 122 MSNN-KITNWGEIDKLAALDKLEDLLLAGNPLY 153 (198)
T ss_dssp ESEE-ECCCHHHHHHHTTTTTCSEEEECSCHHH
T ss_pred CCCC-cCCchhHHHHHhcCCCCCEEEecCCccc
Confidence 8874 3666554 33777888888888877654
No 135
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.15 E-value=1e-10 Score=134.16 Aligned_cols=123 Identities=20% Similarity=0.238 Sum_probs=104.4
Q ss_pred CccEEEecCCcCcccCccccCCCCCCEEEccCCcccCc-ccccCCCCCcEEecccCcCcccCcccccCccCCEEEecCCC
Q 002313 258 ELRVLDLTGFRFHSLPSSLGCLINLRTLSLENCLVVDV-AIIGDLKKLEILSLKHSSIEQLPREIGQLTCLKLLDLSNCS 336 (937)
Q Consensus 258 ~Lr~L~L~~~~~~~lp~~i~~l~~Lr~L~L~~~~~~~l-~~i~~L~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~l~~~~ 336 (937)
.|++|++++|.++.+|. |+.+++|++|++++|.++.+ ..++++++|++|++++|.++.+| .++++++|++|++++|
T Consensus 442 ~L~~L~Ls~n~l~~lp~-~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp-~l~~l~~L~~L~Ls~N- 518 (567)
T 1dce_A 442 DVRVLHLAHKDLTVLCH-LEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVD-GVANLPRLQELLLCNN- 518 (567)
T ss_dssp TCSEEECTTSCCSSCCC-GGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCCCG-GGTTCSSCCEEECCSS-
T ss_pred CceEEEecCCCCCCCcC-ccccccCcEeecCcccccccchhhhcCCCCCEEECCCCCCCCCc-ccCCCCCCcEEECCCC-
Confidence 59999999999999997 99999999999999999887 78999999999999999999998 8999999999999995
Q ss_pred CCccc--ChhhhcCCCCCcEEEcCCCcccceecCCCCCChhhhcCCCCCCeEEe
Q 002313 337 KLKEI--RPNVISNLTRLEELYMGNSFTQWKVEGQSNASLGELKQLSRLTTLEV 388 (937)
Q Consensus 337 ~l~~l--p~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l 388 (937)
.+..+ |.. ++.+++|++|++++|.+. +..+....-+..+++|+.|++
T Consensus 519 ~l~~~~~p~~-l~~l~~L~~L~L~~N~l~----~~~~~~~~l~~~lp~L~~L~l 567 (567)
T 1dce_A 519 RLQQSAAIQP-LVSCPRLVLLNLQGNSLC----QEEGIQERLAEMLPSVSSILT 567 (567)
T ss_dssp CCCSSSTTGG-GGGCTTCCEEECTTSGGG----GSSSCTTHHHHHCTTCSEEEC
T ss_pred CCCCCCCcHH-HhcCCCCCEEEecCCcCC----CCccHHHHHHHHCcccCccCC
Confidence 58888 554 999999999999999875 222223333445778887753
No 136
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.14 E-value=4.5e-11 Score=141.78 Aligned_cols=140 Identities=19% Similarity=0.228 Sum_probs=107.8
Q ss_pred CCCccCCccc-CCCccceeeecCCcccccCChhhhcCCCCccEEEecCCcCcccCccccCCCCCCEEEccCCcccCc-cc
Q 002313 220 RGIYELPERL-GFLKLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHSLPSSLGCLINLRTLSLENCLVVDV-AI 297 (937)
Q Consensus 220 ~~~~~l~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~lp~~i~~l~~Lr~L~L~~~~~~~l-~~ 297 (937)
+.+...+..+ .+.+|++|++.+|.+. .+|..+| ++++|++|+|++|.+..+|..|+++.+|++|+|++|.++.+ ..
T Consensus 211 n~~~~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~-~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp~~ 288 (727)
T 4b8c_D 211 NRMVMPKDSKYDDQLWHALDLSNLQIF-NISANIF-KYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLTSLPAE 288 (727)
T ss_dssp -----------CCCCCCEEECTTSCCS-CCCGGGG-GCCSCSCCBCTTSCCSCCCGGGGGGTTCCEEECTTSCCSSCCSS
T ss_pred cceecChhhhccCCCCcEEECCCCCCC-CCChhhc-CCCCCCEEEeeCCcCcccChhhhCCCCCCEEeCcCCcCCccChh
Confidence 3333334444 6889999999998865 7888875 79999999999999999999999999999999999999877 78
Q ss_pred ccCCCCCcEEecccCcCcccCcccccCccCCEEEecCCCCCcccChhhhcCCCC-CcEEEcCCCcc
Q 002313 298 IGDLKKLEILSLKHSSIEQLPREIGQLTCLKLLDLSNCSKLKEIRPNVISNLTR-LEELYMGNSFT 362 (937)
Q Consensus 298 i~~L~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~l~~L~~-L~~L~l~~~~~ 362 (937)
|+++.+|++|+|++|.++.+|.+++++++|++|++++|. +...++..++.+.. +..|++.+|..
T Consensus 289 ~~~l~~L~~L~L~~N~l~~lp~~~~~l~~L~~L~L~~N~-l~~~~p~~~~~~~~~~~~l~l~~N~l 353 (727)
T 4b8c_D 289 LGSCFQLKYFYFFDNMVTTLPWEFGNLCNLQFLGVEGNP-LEKQFLKILTEKSVTGLIFYLRDNRP 353 (727)
T ss_dssp GGGGTTCSEEECCSSCCCCCCSSTTSCTTCCCEECTTSC-CCSHHHHHHHHHHHHHHHHHHHHCCC
T ss_pred hcCCCCCCEEECCCCCCCccChhhhcCCCccEEeCCCCc-cCCCChHHHhhcchhhhHHhhccCcc
Confidence 999999999999999999999999999999999999965 66555444544321 12245555543
No 137
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.13 E-value=4e-10 Score=108.59 Aligned_cols=127 Identities=24% Similarity=0.337 Sum_probs=107.6
Q ss_pred ccEEEecCCcCcccCccccCCCCCCEEEccCCcccCc--ccccCCCCCcEEecccCcCcccCcc-cccCccCCEEEecCC
Q 002313 259 LRVLDLTGFRFHSLPSSLGCLINLRTLSLENCLVVDV--AIIGDLKKLEILSLKHSSIEQLPRE-IGQLTCLKLLDLSNC 335 (937)
Q Consensus 259 Lr~L~L~~~~~~~lp~~i~~l~~Lr~L~L~~~~~~~l--~~i~~L~~L~~L~L~~~~l~~lp~~-i~~L~~L~~L~l~~~ 335 (937)
.+.++++++++..+|..+. .+|++|++++|.+..+ ..++.+++|++|++++|.++.+|.. ++.+++|++|++++|
T Consensus 9 ~~~l~~~~~~l~~~p~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N 86 (177)
T 2o6r_A 9 GTEIRCNSKGLTSVPTGIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHEN 86 (177)
T ss_dssp TTEEECCSSCCSSCCTTCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CCEEEecCCCCccCCCCCC--CCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCC
Confidence 5789999999999997654 7999999999999877 4579999999999999999999865 689999999999995
Q ss_pred CCCcccChhhhcCCCCCcEEEcCCCcccceecCCCCCChhhhcCCCCCCeEEeecCCCCC
Q 002313 336 SKLKEIRPNVISNLTRLEELYMGNSFTQWKVEGQSNASLGELKQLSRLTTLEVHIPDAQV 395 (937)
Q Consensus 336 ~~l~~lp~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~ 395 (937)
.+..++...++.+++|++|++++|.+. ......+..+++|+.|++++|....
T Consensus 87 -~l~~~~~~~~~~l~~L~~L~l~~N~l~-------~~~~~~~~~l~~L~~L~l~~N~~~~ 138 (177)
T 2o6r_A 87 -KLQSLPNGVFDKLTQLKELALDTNQLK-------SVPDGIFDRLTSLQKIWLHTNPWDC 138 (177)
T ss_dssp -CCCCCCTTTTTTCTTCCEEECCSSCCS-------CCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred -CccccCHHHhhCCcccCEEECcCCcce-------EeCHHHhcCCcccCEEEecCCCeec
Confidence 588898877899999999999999765 2223446778999999999886543
No 138
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.10 E-value=2.7e-12 Score=126.53 Aligned_cols=142 Identities=20% Similarity=0.211 Sum_probs=117.2
Q ss_pred CCcEEEccCC--CCccCCccc-CCCccceeeecCCcccccCChhhhcCCCCccEEEecCCcCcccCccccCCCCCCEEEc
Q 002313 211 APTAISIPFR--GIYELPERL-GFLKLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHSLPSSLGCLINLRTLSL 287 (937)
Q Consensus 211 ~l~~l~l~~~--~~~~l~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~lp~~i~~l~~Lr~L~L 287 (937)
.++...+.+. .++.+|..+ .+++|++|++.+|.+.. +| .+.++++|++|++++|.+..+|..+..+++|++|++
T Consensus 24 ~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~-l~--~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L 100 (198)
T 1ds9_A 24 EAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK-IS--SLSGMENLRILSLGRNLIKKIENLDAVADTLEELWI 100 (198)
T ss_dssp TCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESC-CC--CHHHHTTCCEEEEEEEEECSCSSHHHHHHHCSEEEE
T ss_pred chheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcc-cc--ccccCCCCCEEECCCCCcccccchhhcCCcCCEEEC
Confidence 4555555544 566666655 68999999999887654 77 368999999999999999999998888999999999
Q ss_pred cCCcccCcccccCCCCCcEEecccCcCcccCc--ccccCccCCEEEecCCCCCcccC----------hhhhcCCCCCcEE
Q 002313 288 ENCLVVDVAIIGDLKKLEILSLKHSSIEQLPR--EIGQLTCLKLLDLSNCSKLKEIR----------PNVISNLTRLEEL 355 (937)
Q Consensus 288 ~~~~~~~l~~i~~L~~L~~L~L~~~~l~~lp~--~i~~L~~L~~L~l~~~~~l~~lp----------~~~l~~L~~L~~L 355 (937)
++|.+..++.++.+++|++|++++|.++.+|. .+..+++|++|++++|. +...+ ...+..+++|++|
T Consensus 101 ~~N~l~~l~~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~-l~~~~~~~~~~~~~~~~~~~~l~~L~~L 179 (198)
T 1ds9_A 101 SYNQIASLSGIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNP-LYNDYKENNATSEYRIEVVKRLPNLKKL 179 (198)
T ss_dssp EEEECCCHHHHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCH-HHHHHHTTTTHHHHHHHHHHHCSSCSEE
T ss_pred cCCcCCcCCccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCc-cccccccccchHHHHHHHHHhCCCcEEE
Confidence 99999988889999999999999999998875 78999999999999965 43332 2236788888888
Q ss_pred E
Q 002313 356 Y 356 (937)
Q Consensus 356 ~ 356 (937)
+
T Consensus 180 d 180 (198)
T 1ds9_A 180 D 180 (198)
T ss_dssp C
T ss_pred C
Confidence 6
No 139
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.08 E-value=4.5e-10 Score=107.47 Aligned_cols=100 Identities=24% Similarity=0.407 Sum_probs=66.6
Q ss_pred cEEEecCCcCcccCccccCCCCCCEEEccCCcccCc--ccccCCCCCcEEecccCcCcccCcc-cccCccCCEEEecCCC
Q 002313 260 RVLDLTGFRFHSLPSSLGCLINLRTLSLENCLVVDV--AIIGDLKKLEILSLKHSSIEQLPRE-IGQLTCLKLLDLSNCS 336 (937)
Q Consensus 260 r~L~L~~~~~~~lp~~i~~l~~Lr~L~L~~~~~~~l--~~i~~L~~L~~L~L~~~~l~~lp~~-i~~L~~L~~L~l~~~~ 336 (937)
++++++++.+.++|..+. .+|++|++++|.+..+ ..++++++|++|++++|.++.+|.. ++++++|++|++++|
T Consensus 15 ~~l~~~~n~l~~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N- 91 (174)
T 2r9u_A 15 TLVNCQNIRLASVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDN- 91 (174)
T ss_dssp SEEECCSSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-
T ss_pred cEEEeCCCCCCccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCC-
Confidence 566677776666666554 6677777777766655 4566777777777777777777654 466777777777763
Q ss_pred CCcccChhhhcCCCCCcEEEcCCCcc
Q 002313 337 KLKEIRPNVISNLTRLEELYMGNSFT 362 (937)
Q Consensus 337 ~l~~lp~~~l~~L~~L~~L~l~~~~~ 362 (937)
.+..+|.+.++.+++|++|++++|.+
T Consensus 92 ~l~~l~~~~~~~l~~L~~L~L~~N~~ 117 (174)
T 2r9u_A 92 HLKSIPRGAFDNLKSLTHIYLYNNPW 117 (174)
T ss_dssp CCCCCCTTTTTTCTTCSEEECCSSCB
T ss_pred ccceeCHHHhccccCCCEEEeCCCCc
Confidence 46666665566777777777766654
No 140
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.07 E-value=5.1e-10 Score=106.73 Aligned_cols=102 Identities=24% Similarity=0.362 Sum_probs=73.4
Q ss_pred ccEEEecCCcCcccCccccCCCCCCEEEccCCcccCc--ccccCCCCCcEEecccCcCcccCcc-cccCccCCEEEecCC
Q 002313 259 LRVLDLTGFRFHSLPSSLGCLINLRTLSLENCLVVDV--AIIGDLKKLEILSLKHSSIEQLPRE-IGQLTCLKLLDLSNC 335 (937)
Q Consensus 259 Lr~L~L~~~~~~~lp~~i~~l~~Lr~L~L~~~~~~~l--~~i~~L~~L~~L~L~~~~l~~lp~~-i~~L~~L~~L~l~~~ 335 (937)
.++++++++.++++|..+. .+|++|++++|.++.+ ..++++.+|++|++++|.++.+|.. +..+++|++|++++|
T Consensus 11 ~~~l~~s~n~l~~ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N 88 (170)
T 3g39_A 11 GTTVDCSGKSLASVPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDN 88 (170)
T ss_dssp TTEEECTTSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CCEEEeCCCCcCccCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCC
Confidence 4677777777777776653 6777777777777765 4577777777777777777777754 477777888888774
Q ss_pred CCCcccChhhhcCCCCCcEEEcCCCccc
Q 002313 336 SKLKEIRPNVISNLTRLEELYMGNSFTQ 363 (937)
Q Consensus 336 ~~l~~lp~~~l~~L~~L~~L~l~~~~~~ 363 (937)
.+..+|.+.++.+++|++|++++|.+.
T Consensus 89 -~l~~~~~~~~~~l~~L~~L~L~~N~~~ 115 (170)
T 3g39_A 89 -QLKSIPRGAFDNLKSLTHIWLLNNPWD 115 (170)
T ss_dssp -CCCCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred -ccCEeCHHHhcCCCCCCEEEeCCCCCC
Confidence 477777766777777777777777543
No 141
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=98.98 E-value=1.7e-09 Score=103.46 Aligned_cols=103 Identities=21% Similarity=0.302 Sum_probs=65.3
Q ss_pred ceeeecCCcccccCChhhhcCCCCccEEEecCCcCccc-CccccCCCCCCEEEccCCcccCc--ccccCCCCCcEEeccc
Q 002313 235 KLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHSL-PSSLGCLINLRTLSLENCLVVDV--AIIGDLKKLEILSLKH 311 (937)
Q Consensus 235 ~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~l-p~~i~~l~~Lr~L~L~~~~~~~l--~~i~~L~~L~~L~L~~ 311 (937)
+.+++.++.. ..+|..+ .++|++|+|++|.+..+ |..|+++++|++|+|++|.++.+ ..+.++++|++|++++
T Consensus 15 ~~l~~~~n~l-~~iP~~~---~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~ 90 (174)
T 2r9u_A 15 TLVNCQNIRL-ASVPAGI---PTDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLND 90 (174)
T ss_dssp SEEECCSSCC-SSCCSCC---CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred cEEEeCCCCC-CccCCCc---CCCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCC
Confidence 3444444432 3455443 25667777777777666 45567777777777777777665 2356777777777777
Q ss_pred CcCcccCcc-cccCccCCEEEecCCCCCcccC
Q 002313 312 SSIEQLPRE-IGQLTCLKLLDLSNCSKLKEIR 342 (937)
Q Consensus 312 ~~l~~lp~~-i~~L~~L~~L~l~~~~~l~~lp 342 (937)
|.++.+|.. ++.+++|++|++++|. +...+
T Consensus 91 N~l~~l~~~~~~~l~~L~~L~L~~N~-~~c~~ 121 (174)
T 2r9u_A 91 NHLKSIPRGAFDNLKSLTHIYLYNNP-WDCEC 121 (174)
T ss_dssp SCCCCCCTTTTTTCTTCSEEECCSSC-BCTTB
T ss_pred CccceeCHHHhccccCCCEEEeCCCC-ccccc
Confidence 777777754 6777777777777743 44333
No 142
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=98.92 E-value=4.8e-09 Score=99.96 Aligned_cols=98 Identities=24% Similarity=0.329 Sum_probs=63.7
Q ss_pred ceeeecCCcccccCChhhhcCCCCccEEEecCCcCccc-CccccCCCCCCEEEccCCcccCc--ccccCCCCCcEEeccc
Q 002313 235 KLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHSL-PSSLGCLINLRTLSLENCLVVDV--AIIGDLKKLEILSLKH 311 (937)
Q Consensus 235 ~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~l-p~~i~~l~~Lr~L~L~~~~~~~l--~~i~~L~~L~~L~L~~ 311 (937)
+++++.++.+ ..+|..+ .++|++|+|++|.+..+ |..|.++.+|++|++++|+++.+ ..+.++++|++|++++
T Consensus 12 ~~l~~s~n~l-~~ip~~~---~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~ 87 (170)
T 3g39_A 12 TTVDCSGKSL-ASVPTGI---PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLND 87 (170)
T ss_dssp TEEECTTSCC-SSCCSCC---CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CEEEeCCCCc-CccCccC---CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCC
Confidence 3444444432 2355433 35667777777777766 55567777777777777777665 3356777777777777
Q ss_pred CcCcccCcc-cccCccCCEEEecCCC
Q 002313 312 SSIEQLPRE-IGQLTCLKLLDLSNCS 336 (937)
Q Consensus 312 ~~l~~lp~~-i~~L~~L~~L~l~~~~ 336 (937)
|.++.+|.. +.++++|++|++++|.
T Consensus 88 N~l~~~~~~~~~~l~~L~~L~L~~N~ 113 (170)
T 3g39_A 88 NQLKSIPRGAFDNLKSLTHIWLLNNP 113 (170)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred CccCEeCHHHhcCCCCCCEEEeCCCC
Confidence 777777653 6777777777777754
No 143
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=98.88 E-value=5.8e-09 Score=111.74 Aligned_cols=188 Identities=18% Similarity=0.166 Sum_probs=118.4
Q ss_pred cCCCcEEEccCCCCc--------------------cCCccc--C--------CCccceeeecCCcccccCChhhhcCCCC
Q 002313 209 DEAPTAISIPFRGIY--------------------ELPERL--G--------FLKLKLFLFFTENLSLQIPDPFFEGMTE 258 (937)
Q Consensus 209 ~~~l~~l~l~~~~~~--------------------~l~~~~--~--------~~~L~~L~l~~~~~~~~~~~~~~~~l~~ 258 (937)
..+++.|++++|.+. .+|... . +++|+.+.+.. ....+++.+|..+++
T Consensus 48 l~~L~~LdLs~n~i~~~~~~~~~~~~~~~~~~~~~~I~~~aF~~~~~~~~~g~~~L~~l~L~~--~i~~I~~~aF~~~~~ 125 (329)
T 3sb4_A 48 FPSLKVLDISNAEIKMYSGKAGTYPNGKFYIYMANFVPAYAFSNVVNGVTKGKQTLEKVILSE--KIKNIEDAAFKGCDN 125 (329)
T ss_dssp CTTCCEEEEEEEEECCEEESSSSSGGGCCEEECTTEECTTTTEEEETTEEEECTTCCC-CBCT--TCCEECTTTTTTCTT
T ss_pred hccCeEEecCcceeEEecCccccccccccccccccccCHHHhcccccccccccCCCcEEECCc--cccchhHHHhhcCcc
Confidence 567888888877766 222222 4 66777777766 234566666777777
Q ss_pred ccEEEecCCcCccc-CccccCCCCCCEEEccCCcc----cCc--ccc---------------------------------
Q 002313 259 LRVLDLTGFRFHSL-PSSLGCLINLRTLSLENCLV----VDV--AII--------------------------------- 298 (937)
Q Consensus 259 Lr~L~L~~~~~~~l-p~~i~~l~~Lr~L~L~~~~~----~~l--~~i--------------------------------- 298 (937)
|+.|+++++.+..+ +..|..+.++.++.+..... ..+ ..+
T Consensus 126 L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L~~~i~~~~~~~l~~~~~~~~~~~~~~~ 205 (329)
T 3sb4_A 126 LKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPLETTIQVGAMGKLEDEIMKAGLQPRDIN 205 (329)
T ss_dssp CCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCCCEEEEEECTTCCHHHHHHHTTCCGGGCS
T ss_pred cceEEcCCCCccccchhhhcCCCceEEecCcchhhhhccccccccccccccccceeEEecCCCcHHHHHhhcccCccccc
Confidence 77777777776665 34455555555555443110 000 000
Q ss_pred -----------------cCCCCCcEEecccCcCcccCc-ccccCccCCEEEecCCCCCcccChhhhcCCCCCc-EEEcCC
Q 002313 299 -----------------GDLKKLEILSLKHSSIEQLPR-EIGQLTCLKLLDLSNCSKLKEIRPNVISNLTRLE-ELYMGN 359 (937)
Q Consensus 299 -----------------~~L~~L~~L~L~~~~l~~lp~-~i~~L~~L~~L~l~~~~~l~~lp~~~l~~L~~L~-~L~l~~ 359 (937)
..+.+|+++++++|+++.+|. .+..+++|+.+++..+ +..++...+.++.+|+ .+.+.+
T Consensus 206 ~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n--i~~I~~~aF~~~~~L~~~l~l~~ 283 (329)
T 3sb4_A 206 FLTIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN--LKTIGQRVFSNCGRLAGTLELPA 283 (329)
T ss_dssp EEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT--CCEECTTTTTTCTTCCEEEEECT
T ss_pred eEEEeeeecHHHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc--cceehHHHhhCChhccEEEEEcc
Confidence 026678888888887888875 4777888888888773 7778877788888888 888765
Q ss_pred CcccceecCCCCCChhhhcCCCCCCeEEeecCCCCCCCccc--ccccccee
Q 002313 360 SFTQWKVEGQSNASLGELKQLSRLTTLEVHIPDAQVMPQDL--VFVELERF 408 (937)
Q Consensus 360 ~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~--~~~~L~~l 408 (937)
. +. ......+.++.+|+.++++.+.+..++..+ ...+|+.+
T Consensus 284 ~-l~-------~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~~~L~~l 326 (329)
T 3sb4_A 284 S-VT-------AIEFGAFMGCDNLRYVLATGDKITTLGDELFGNGVPSKLI 326 (329)
T ss_dssp T-CC-------EECTTTTTTCTTEEEEEECSSCCCEECTTTTCTTCCCCEE
T ss_pred c-ce-------EEchhhhhCCccCCEEEeCCCccCccchhhhcCCcchhhh
Confidence 3 21 123456777778888888777776666543 34455544
No 144
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.65 E-value=5.1e-08 Score=105.33 Aligned_cols=98 Identities=23% Similarity=0.223 Sum_probs=53.8
Q ss_pred EEecCC-cCcccCccccCCCCCCEEEccC-CcccCc--ccccCCCCCcEEecccCcCcccCc-ccccCccCCEEEecCCC
Q 002313 262 LDLTGF-RFHSLPSSLGCLINLRTLSLEN-CLVVDV--AIIGDLKKLEILSLKHSSIEQLPR-EIGQLTCLKLLDLSNCS 336 (937)
Q Consensus 262 L~L~~~-~~~~lp~~i~~l~~Lr~L~L~~-~~~~~l--~~i~~L~~L~~L~L~~~~l~~lp~-~i~~L~~L~~L~l~~~~ 336 (937)
++++++ ++..+|. |..+.+|++|+|++ |.+..+ ..|+.|.+|++|+|++|.++.+|+ .+++|++|++|+|++ +
T Consensus 13 v~~~~~n~l~~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~-N 90 (347)
T 2ifg_A 13 LRCTRDGALDSLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSF-N 90 (347)
T ss_dssp EECCSSCCCTTTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCS-S
T ss_pred EEcCCCCCCCccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCC-C
Confidence 355554 5555555 55555555555554 555544 345556666666666665555543 345666666666665 3
Q ss_pred CCcccChhhhcCCCCCcEEEcCCCcc
Q 002313 337 KLKEIRPNVISNLTRLEELYMGNSFT 362 (937)
Q Consensus 337 ~l~~lp~~~l~~L~~L~~L~l~~~~~ 362 (937)
.+..+|...+..+. |+.|++.+|.+
T Consensus 91 ~l~~~~~~~~~~~~-L~~l~l~~N~~ 115 (347)
T 2ifg_A 91 ALESLSWKTVQGLS-LQELVLSGNPL 115 (347)
T ss_dssp CCSCCCSTTTCSCC-CCEEECCSSCC
T ss_pred ccceeCHHHcccCC-ceEEEeeCCCc
Confidence 35555555444443 66666655543
No 145
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.62 E-value=2.8e-09 Score=115.45 Aligned_cols=156 Identities=14% Similarity=0.061 Sum_probs=109.6
Q ss_pred hccCCCcEEEccCCCCccCC-----ccc--CCCccceeeecCCcccccCChhhhcCCCCccEEEecCCcCccc-----Cc
Q 002313 207 KIDEAPTAISIPFRGIYELP-----ERL--GFLKLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHSL-----PS 274 (937)
Q Consensus 207 ~~~~~l~~l~l~~~~~~~l~-----~~~--~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~l-----p~ 274 (937)
...+.++.++++++.+.... ..+ ..++|++|++++|.+...-...++..+++|+.|+|++|.+... ..
T Consensus 69 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~ 148 (372)
T 3un9_A 69 EVLSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRD 148 (372)
T ss_dssp HHHTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHH
T ss_pred HHHhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHH
Confidence 45678999999999876422 222 2368999999988764433334445567899999999988632 22
Q ss_pred cc-cCCCCCCEEEccCCcccC-----c-ccccCCCCCcEEecccCcCcc-----cCcccccCccCCEEEecCCCCCcccC
Q 002313 275 SL-GCLINLRTLSLENCLVVD-----V-AIIGDLKKLEILSLKHSSIEQ-----LPREIGQLTCLKLLDLSNCSKLKEIR 342 (937)
Q Consensus 275 ~i-~~l~~Lr~L~L~~~~~~~-----l-~~i~~L~~L~~L~L~~~~l~~-----lp~~i~~L~~L~~L~l~~~~~l~~lp 342 (937)
.+ ....+|++|+|++|.++. + ..+...++|++|+|++|.+.. ++..+...++|++|++++|. +....
T Consensus 149 ~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~-i~~~g 227 (372)
T 3un9_A 149 LLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNG-AGDTA 227 (372)
T ss_dssp HHHSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSC-CCHHH
T ss_pred HHHhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCC-CCHHH
Confidence 22 246789999999998764 2 445778889999999998763 45567778889999999864 55432
Q ss_pred hh----hhcCCCCCcEEEcCCCccc
Q 002313 343 PN----VISNLTRLEELYMGNSFTQ 363 (937)
Q Consensus 343 ~~----~l~~L~~L~~L~l~~~~~~ 363 (937)
.. .+...++|++|++++|.+.
T Consensus 228 ~~~l~~~L~~~~~L~~L~Ls~N~i~ 252 (372)
T 3un9_A 228 ALALARAAREHPSLELLHLYFNELS 252 (372)
T ss_dssp HHHHHHHHHHCSSCCEEECTTSSCC
T ss_pred HHHHHHHHHhCCCCCEEeccCCCCC
Confidence 11 1445688999999988664
No 146
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.58 E-value=1.1e-07 Score=102.86 Aligned_cols=99 Identities=20% Similarity=0.143 Sum_probs=76.5
Q ss_pred eeeecCCcccccCChhhhcCCCCccEEEecC-CcCcccC-ccccCCCCCCEEEccCCcccCc--ccccCCCCCcEEeccc
Q 002313 236 LFLFFTENLSLQIPDPFFEGMTELRVLDLTG-FRFHSLP-SSLGCLINLRTLSLENCLVVDV--AIIGDLKKLEILSLKH 311 (937)
Q Consensus 236 ~L~l~~~~~~~~~~~~~~~~l~~Lr~L~L~~-~~~~~lp-~~i~~l~~Lr~L~L~~~~~~~l--~~i~~L~~L~~L~L~~ 311 (937)
.+++.+++....+|. +..+.+|++|+|++ |.+..+| ..|+.+.+|++|+|++|.++.+ ..|++|.+|++|+|++
T Consensus 12 ~v~~~~~n~l~~ip~--l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~ 89 (347)
T 2ifg_A 12 GLRCTRDGALDSLHH--LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSF 89 (347)
T ss_dssp CEECCSSCCCTTTTT--SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCS
T ss_pred EEEcCCCCCCCccCC--CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCC
Confidence 345555533456776 57888899999986 8888886 5688889999999999888766 4678899999999999
Q ss_pred CcCcccCcccccCccCCEEEecCCC
Q 002313 312 SSIEQLPREIGQLTCLKLLDLSNCS 336 (937)
Q Consensus 312 ~~l~~lp~~i~~L~~L~~L~l~~~~ 336 (937)
|.++.+|..+.....|++|++.+|.
T Consensus 90 N~l~~~~~~~~~~~~L~~l~l~~N~ 114 (347)
T 2ifg_A 90 NALESLSWKTVQGLSLQELVLSGNP 114 (347)
T ss_dssp SCCSCCCSTTTCSCCCCEEECCSSC
T ss_pred CccceeCHHHcccCCceEEEeeCCC
Confidence 9998888765544449999998854
No 147
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=98.50 E-value=3e-07 Score=98.31 Aligned_cols=167 Identities=10% Similarity=0.079 Sum_probs=124.5
Q ss_pred cCCCcEEEccCCCCccCCccc--CCCccceeeecCCcccccCChhhhcCCCCccEEEecCCcC----ccc----------
Q 002313 209 DEAPTAISIPFRGIYELPERL--GFLKLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRF----HSL---------- 272 (937)
Q Consensus 209 ~~~l~~l~l~~~~~~~l~~~~--~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~----~~l---------- 272 (937)
..+++.+.+.. .+..++... .+++|+.+.+..+... .++..+|..+.++..+.+..... ..+
T Consensus 100 ~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~-~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~ 177 (329)
T 3sb4_A 100 KQTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAP-NLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEP 177 (329)
T ss_dssp CTTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCC-EECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCC
T ss_pred cCCCcEEECCc-cccchhHHHhhcCcccceEEcCCCCcc-ccchhhhcCCCceEEecCcchhhhhccccccccccccccc
Confidence 56788888887 777777654 6889999999877643 56667777777777776655211 000
Q ss_pred -------------Ccc---------------------------c-cCCCCCCEEEccCCcccCc--ccccCCCCCcEEec
Q 002313 273 -------------PSS---------------------------L-GCLINLRTLSLENCLVVDV--AIIGDLKKLEILSL 309 (937)
Q Consensus 273 -------------p~~---------------------------i-~~l~~Lr~L~L~~~~~~~l--~~i~~L~~L~~L~L 309 (937)
|.. + ..+.+|+.+++++|.++.+ ..|.++.+|+.+++
T Consensus 178 L~~~i~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l 257 (329)
T 3sb4_A 178 LETTIQVGAMGKLEDEIMKAGLQPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLKIKL 257 (329)
T ss_dssp CEEEEEECTTCCHHHHHHHTTCCGGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCCEEEC
T ss_pred cceeEEecCCCcHHHHHhhcccCccccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCCEEEC
Confidence 000 0 0278999999999988877 67999999999999
Q ss_pred ccCcCcccCc-ccccCccCC-EEEecCCCCCcccChhhhcCCCCCcEEEcCCCcccceecCCCCCChhhhcCCCCCCeEE
Q 002313 310 KHSSIEQLPR-EIGQLTCLK-LLDLSNCSKLKEIRPNVISNLTRLEELYMGNSFTQWKVEGQSNASLGELKQLSRLTTLE 387 (937)
Q Consensus 310 ~~~~l~~lp~-~i~~L~~L~-~L~l~~~~~l~~lp~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~ 387 (937)
.++ ++.++. .|.++.+|+ .+++.. .+..++...+..+++|+++++.++.+. ......+.++++|+.+.
T Consensus 258 ~~n-i~~I~~~aF~~~~~L~~~l~l~~--~l~~I~~~aF~~c~~L~~l~l~~n~i~-------~I~~~aF~~~~~L~~ly 327 (329)
T 3sb4_A 258 PHN-LKTIGQRVFSNCGRLAGTLELPA--SVTAIEFGAFMGCDNLRYVLATGDKIT-------TLGDELFGNGVPSKLIY 327 (329)
T ss_dssp CTT-CCEECTTTTTTCTTCCEEEEECT--TCCEECTTTTTTCTTEEEEEECSSCCC-------EECTTTTCTTCCCCEEE
T ss_pred Ccc-cceehHHHhhCChhccEEEEEcc--cceEEchhhhhCCccCCEEEeCCCccC-------ccchhhhcCCcchhhhc
Confidence 987 888874 589999999 999987 588999888999999999999776543 23345677778888765
No 148
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.48 E-value=4.2e-06 Score=91.33 Aligned_cols=121 Identities=14% Similarity=0.154 Sum_probs=77.8
Q ss_pred CccceeeecCCcccccCChhhhcCCCCccEEEecCCcCcccC-ccccCCCCCCEEEccCCcccCc--ccccCCCCCcEEe
Q 002313 232 LKLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHSLP-SSLGCLINLRTLSLENCLVVDV--AIIGDLKKLEILS 308 (937)
Q Consensus 232 ~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~lp-~~i~~l~~Lr~L~L~~~~~~~l--~~i~~L~~L~~L~ 308 (937)
..++.+.+..+ ...++...|... +|+.+.+..+ ++.++ ..|.+ .+|+.+.+.. .++.+ ..|.++.+|+.++
T Consensus 113 ~~l~~i~ip~~--i~~I~~~aF~~~-~L~~i~l~~~-i~~I~~~aF~~-~~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~ 186 (401)
T 4fdw_A 113 KGYNEIILPNS--VKSIPKDAFRNS-QIAKVVLNEG-LKSIGDMAFFN-STVQEIVFPS-TLEQLKEDIFYYCYNLKKAD 186 (401)
T ss_dssp SSCSEEECCTT--CCEECTTTTTTC-CCSEEECCTT-CCEECTTTTTT-CCCCEEECCT-TCCEECSSTTTTCTTCCEEE
T ss_pred CCccEEEECCc--cCEehHhhcccC-CccEEEeCCC-ccEECHHhcCC-CCceEEEeCC-CccEehHHHhhCcccCCeee
Confidence 44444544432 334556666664 5777777654 66663 34555 3577777765 44444 5677777788888
Q ss_pred cccCcCcccCcccccCccCCEEEecCCCCCcccChhhhcCCCCCcEEEcCCC
Q 002313 309 LKHSSIEQLPREIGQLTCLKLLDLSNCSKLKEIRPNVISNLTRLEELYMGNS 360 (937)
Q Consensus 309 L~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~l~~L~~L~~L~l~~~ 360 (937)
+.++.++.+|...-...+|+.+.+.. .+..++...+.++++|+.+.+..+
T Consensus 187 l~~n~l~~I~~~aF~~~~L~~l~lp~--~l~~I~~~aF~~~~~L~~l~l~~~ 236 (401)
T 4fdw_A 187 LSKTKITKLPASTFVYAGIEEVLLPV--TLKEIGSQAFLKTSQLKTIEIPEN 236 (401)
T ss_dssp CTTSCCSEECTTTTTTCCCSEEECCT--TCCEECTTTTTTCTTCCCEECCTT
T ss_pred cCCCcceEechhhEeecccCEEEeCC--chheehhhHhhCCCCCCEEecCCC
Confidence 87777777776544457788877764 377777777777778887777654
No 149
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.44 E-value=1.5e-08 Score=109.70 Aligned_cols=161 Identities=14% Similarity=0.131 Sum_probs=112.2
Q ss_pred CCccceeeecCCcccccCChh---hhc-CCCCccEEEecCCcCcc--cCccccCCCCCCEEEccCCcccCc--ccc----
Q 002313 231 FLKLKLFLFFTENLSLQIPDP---FFE-GMTELRVLDLTGFRFHS--LPSSLGCLINLRTLSLENCLVVDV--AII---- 298 (937)
Q Consensus 231 ~~~L~~L~l~~~~~~~~~~~~---~~~-~l~~Lr~L~L~~~~~~~--lp~~i~~l~~Lr~L~L~~~~~~~l--~~i---- 298 (937)
+++|++|++.+|.+...-... ++. ..++|++|+|++|.+.. +..-...+.+|++|+|++|.+... ..+
T Consensus 71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L 150 (372)
T 3un9_A 71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLL 150 (372)
T ss_dssp HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHH
T ss_pred HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHH
Confidence 568999999998754321111 122 33799999999999863 222233467899999999988643 233
Q ss_pred -cCCCCCcEEecccCcCcc-----cCcccccCccCCEEEecCCCCCcccC----hhhhcCCCCCcEEEcCCCcccceecC
Q 002313 299 -GDLKKLEILSLKHSSIEQ-----LPREIGQLTCLKLLDLSNCSKLKEIR----PNVISNLTRLEELYMGNSFTQWKVEG 368 (937)
Q Consensus 299 -~~L~~L~~L~L~~~~l~~-----lp~~i~~L~~L~~L~l~~~~~l~~lp----~~~l~~L~~L~~L~l~~~~~~~~~~~ 368 (937)
....+|++|++++|.++. ++..+...++|++|++++|. +.... ...+...++|++|++++|.+...
T Consensus 151 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~-l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~--- 226 (372)
T 3un9_A 151 LHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTG-LGDEGLELLAAQLDRNRQLQELNVAYNGAGDT--- 226 (372)
T ss_dssp HSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSS-CHHHHHHHHHHHGGGCSCCCEEECCSSCCCHH---
T ss_pred HhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCC-CCcHHHHHHHHHHhcCCCcCeEECCCCCCCHH---
Confidence 356889999999998864 55666888999999999965 65432 12266778999999999976410
Q ss_pred CCCCChhhhcCCCCCCeEEeecCCCCC
Q 002313 369 QSNASLGELKQLSRLTTLEVHIPDAQV 395 (937)
Q Consensus 369 ~~~~~~~~l~~l~~L~~L~l~~~~~~~ 395 (937)
........+...++|+.|++++|.+..
T Consensus 227 g~~~l~~~L~~~~~L~~L~Ls~N~i~~ 253 (372)
T 3un9_A 227 AALALARAAREHPSLELLHLYFNELSS 253 (372)
T ss_dssp HHHHHHHHHHHCSSCCEEECTTSSCCH
T ss_pred HHHHHHHHHHhCCCCCEEeccCCCCCH
Confidence 001233456677889999999987643
No 150
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.32 E-value=6.3e-06 Score=89.97 Aligned_cols=164 Identities=14% Similarity=0.168 Sum_probs=84.1
Q ss_pred CCcEEEccCCCCccCCccc--CCCccceeeecCCcccccCChhhhcCCCCccEEEecCCcCccc-CccccCCCCCCEEEc
Q 002313 211 APTAISIPFRGIYELPERL--GFLKLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHSL-PSSLGCLINLRTLSL 287 (937)
Q Consensus 211 ~l~~l~l~~~~~~~l~~~~--~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~l-p~~i~~l~~Lr~L~L 287 (937)
+++.+.+.. .+..++... .+.+|+.+.+..+. ...++...|. ...|+.+.+.. .+..+ ...|.++.+|+.+.+
T Consensus 158 ~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~-l~~I~~~aF~-~~~L~~l~lp~-~l~~I~~~aF~~~~~L~~l~l 233 (401)
T 4fdw_A 158 TVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKTK-ITKLPASTFV-YAGIEEVLLPV-TLKEIGSQAFLKTSQLKTIEI 233 (401)
T ss_dssp CCCEEECCT-TCCEECSSTTTTCTTCCEEECTTSC-CSEECTTTTT-TCCCSEEECCT-TCCEECTTTTTTCTTCCCEEC
T ss_pred CceEEEeCC-CccEehHHHhhCcccCCeeecCCCc-ceEechhhEe-ecccCEEEeCC-chheehhhHhhCCCCCCEEec
Confidence 355555553 455554433 56677777776554 2345555555 46666666663 35555 334666666666666
Q ss_pred cCCcccCc--ccccCCCCCcEEecccCcCcccC-cccccCccCCEEEecCCCC----CcccChhhhcCCCCCcEEEcCCC
Q 002313 288 ENCLVVDV--AIIGDLKKLEILSLKHSSIEQLP-REIGQLTCLKLLDLSNCSK----LKEIRPNVISNLTRLEELYMGNS 360 (937)
Q Consensus 288 ~~~~~~~l--~~i~~L~~L~~L~L~~~~l~~lp-~~i~~L~~L~~L~l~~~~~----l~~lp~~~l~~L~~L~~L~l~~~ 360 (937)
..+ ++.+ ..|.+ .+|+.+.+. ++++.++ ..+.++++|+.+++.++.. ...++...+..+++|+.+.+.++
T Consensus 234 ~~~-l~~I~~~aF~~-~~L~~i~lp-~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~~ 310 (401)
T 4fdw_A 234 PEN-VSTIGQEAFRE-SGITTVKLP-NGVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPES 310 (401)
T ss_dssp CTT-CCEECTTTTTT-CCCSEEEEE-TTCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCTT
T ss_pred CCC-ccCcccccccc-CCccEEEeC-CCccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCCc
Confidence 553 2322 33444 456666663 2344443 3455566666666554211 11355555556666666655432
Q ss_pred cccceecCCCCCChhhhcCCCCCCeEEee
Q 002313 361 FTQWKVEGQSNASLGELKQLSRLTTLEVH 389 (937)
Q Consensus 361 ~~~~~~~~~~~~~~~~l~~l~~L~~L~l~ 389 (937)
+. ......+.++++|+.+.+.
T Consensus 311 -i~-------~I~~~aF~~c~~L~~l~lp 331 (401)
T 4fdw_A 311 -IR-------ILGQGLLGGNRKVTQLTIP 331 (401)
T ss_dssp -CC-------EECTTTTTTCCSCCEEEEC
T ss_pred -eE-------EEhhhhhcCCCCccEEEEC
Confidence 11 1122344455555555553
No 151
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.27 E-value=2.3e-07 Score=86.49 Aligned_cols=40 Identities=18% Similarity=0.069 Sum_probs=19.9
Q ss_pred CccEEEecCCCCcceeccCCCCcccCCCCcEEEEEcCCCccc
Q 002313 807 KLEVLRIDGMDNLRKIWHHQLALDSFTKLKDLDVEYCDQLLS 848 (937)
Q Consensus 807 ~L~~L~l~~c~~l~~l~~~~~~~~~l~~L~~L~i~~C~~L~~ 848 (937)
+|++|+|++|+++++-.... +..+++|++|+|++|+.+++
T Consensus 115 ~L~~L~Ls~C~~ITD~Gl~~--L~~~~~L~~L~L~~c~~Itd 154 (176)
T 3e4g_A 115 SMLEMEIISCGNVTDKGIIA--LHHFRNLKYLFLSDLPGVKE 154 (176)
T ss_dssp HCCEEEEESCTTCCHHHHHH--GGGCTTCCEEEEESCTTCCC
T ss_pred CCCEEEcCCCCcCCHHHHHH--HhcCCCCCEEECCCCCCCCc
Confidence 45555555555555432221 22345555555555555554
No 152
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.23 E-value=5.3e-07 Score=84.13 Aligned_cols=39 Identities=10% Similarity=0.177 Sum_probs=21.3
Q ss_pred CcceeeccCcccceeccCCcccccccCCCccEEEEeccCCccc
Q 002313 649 SLKKLKLSSINVEKIWLNSFSAIESWGKNLTKLTVEKCGRLKF 691 (937)
Q Consensus 649 ~L~~L~l~~c~l~~~~~~~~~~~~~~l~~L~~L~i~~c~~l~~ 691 (937)
.|++|++++|.++......+ ..+++|++|++++|..+++
T Consensus 62 ~L~~LDLs~~~Itd~GL~~L----~~~~~L~~L~L~~C~~ItD 100 (176)
T 3e4g_A 62 KIQAIDATDSCIMSIGFDHM----EGLQYVEKIRLCKCHYIED 100 (176)
T ss_dssp CEEEEEEESCCCCGGGGGGG----TTCSCCCEEEEESCTTCCH
T ss_pred eEeEEeCcCCCccHHHHHHh----cCCCCCCEEEeCCCCccCH
Confidence 56666666665444332221 2456666666666666554
No 153
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.15 E-value=8.8e-05 Score=81.20 Aligned_cols=109 Identities=10% Similarity=0.138 Sum_probs=60.6
Q ss_pred ccCChhhhcCCCCccEEEecCCcCcccC-ccccCCCCCCEEEccCCcccCc--ccccCCCCCcEEecccCcCcccC-ccc
Q 002313 246 LQIPDPFFEGMTELRVLDLTGFRFHSLP-SSLGCLINLRTLSLENCLVVDV--AIIGDLKKLEILSLKHSSIEQLP-REI 321 (937)
Q Consensus 246 ~~~~~~~~~~l~~Lr~L~L~~~~~~~lp-~~i~~l~~Lr~L~L~~~~~~~l--~~i~~L~~L~~L~L~~~~l~~lp-~~i 321 (937)
..|...+|.++.+|+.+.+.. .++.++ ..|.++.+|+.+++..+ ++.+ ..+..+.+|+.+.+..+ +..++ ..+
T Consensus 60 tsIg~~AF~~c~~L~~i~lp~-~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~-l~~i~~~aF 136 (394)
T 4fs7_A 60 VSIGYAAFQGCRKVTEIKIPS-TVREIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLM-LKSIGVEAF 136 (394)
T ss_dssp EEECTTTTTTCTTEEEEECCT-TCCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECTTTT
T ss_pred eEhHHHHhhCCCCceEEEeCC-CccCcchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccCc-eeeecceee
Confidence 356666677777888887764 366663 45777777777777644 3333 45666667766655433 33332 223
Q ss_pred ccCccCCEEEecCCCCCcccChhhhcCCCCCcEEEcCCC
Q 002313 322 GQLTCLKLLDLSNCSKLKEIRPNVISNLTRLEELYMGNS 360 (937)
Q Consensus 322 ~~L~~L~~L~l~~~~~l~~lp~~~l~~L~~L~~L~l~~~ 360 (937)
.....+..... .....+....+.++.+|+.+.+.++
T Consensus 137 ~~~~~~~~~~~---~~~~~i~~~aF~~c~~L~~i~l~~~ 172 (394)
T 4fs7_A 137 KGCDFKEITIP---EGVTVIGDEAFATCESLEYVSLPDS 172 (394)
T ss_dssp TTCCCSEEECC---TTCCEECTTTTTTCTTCCEEECCTT
T ss_pred ecccccccccC---ccccccchhhhcccCCCcEEecCCc
Confidence 33332222222 2234444455666677777766543
No 154
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=97.97 E-value=5.3e-06 Score=88.78 Aligned_cols=159 Identities=18% Similarity=0.203 Sum_probs=95.7
Q ss_pred CCCccceeeecCCccc--------ccCChhhhcCCCCccEEEecCCcCcccCccccCCCCCCEEEccCCcccC--ccccc
Q 002313 230 GFLKLKLFLFFTENLS--------LQIPDPFFEGMTELRVLDLTGFRFHSLPSSLGCLINLRTLSLENCLVVD--VAIIG 299 (937)
Q Consensus 230 ~~~~L~~L~l~~~~~~--------~~~~~~~~~~l~~Lr~L~L~~~~~~~lp~~i~~l~~Lr~L~L~~~~~~~--l~~i~ 299 (937)
.+++|+.|.+...... ..-...++..+++|+.|+++++.-..+|. +. +.+|+.|++..|.+.. +..+.
T Consensus 137 ~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l~l~~-~~-~~~L~~L~L~~~~l~~~~l~~l~ 214 (362)
T 2ra8_A 137 KFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNLSIGK-KP-RPNLKSLEIISGGLPDSVVEDIL 214 (362)
T ss_dssp HHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTCBCCS-CB-CTTCSEEEEECSBCCHHHHHHHH
T ss_pred hcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCceecc-cc-CCCCcEEEEecCCCChHHHHHHH
Confidence 4678888877543210 01123456788899999998874334554 43 7889999998887642 23343
Q ss_pred --CCCCCcEEecccC--c------CcccCccc--ccCccCCEEEecCCCCCcccChhhh--cCCCCCcEEEcCCCcccce
Q 002313 300 --DLKKLEILSLKHS--S------IEQLPREI--GQLTCLKLLDLSNCSKLKEIRPNVI--SNLTRLEELYMGNSFTQWK 365 (937)
Q Consensus 300 --~L~~L~~L~L~~~--~------l~~lp~~i--~~L~~L~~L~l~~~~~l~~lp~~~l--~~L~~L~~L~l~~~~~~~~ 365 (937)
.+++|++|+|+.+ . +..+...+ +.+++|++|++++|......+.... ..+++|++|+++.|.+...
T Consensus 215 ~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~ 294 (362)
T 2ra8_A 215 GSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDE 294 (362)
T ss_dssp HSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHH
T ss_pred HccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChH
Confidence 7889999988531 1 22222222 3578999999988653222222211 2578899999988765410
Q ss_pred ecCCCCCChhhhcCCCCCCeEEeecCCC
Q 002313 366 VEGQSNASLGELKQLSRLTTLEVHIPDA 393 (937)
Q Consensus 366 ~~~~~~~~~~~l~~l~~L~~L~l~~~~~ 393 (937)
| .......+.++++|+.|+++.+.+
T Consensus 295 --G-~~~L~~~L~~l~~L~~L~L~~n~i 319 (362)
T 2ra8_A 295 --G-ARLLLDHVDKIKHLKFINMKYNYL 319 (362)
T ss_dssp --H-HHHHHTTHHHHTTCSEEECCSBBC
T ss_pred --H-HHHHHhhcccCCcceEEECCCCcC
Confidence 0 011223445678888999887654
No 155
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=97.93 E-value=9.4e-05 Score=80.98 Aligned_cols=57 Identities=14% Similarity=0.211 Sum_probs=35.5
Q ss_pred CCCccceeeecCCcccccCChhhhcCCCCccEEEecCCcCcccC-ccccCCCCCCEEEccC
Q 002313 230 GFLKLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHSLP-SSLGCLINLRTLSLEN 289 (937)
Q Consensus 230 ~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~lp-~~i~~l~~Lr~L~L~~ 289 (937)
.+.+|+.+.+..+ ...+...+|.++.+|+.+++..+ ++.++ ..|..+..|+.+.+..
T Consensus 69 ~c~~L~~i~lp~~--i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~ 126 (394)
T 4fs7_A 69 GCRKVTEIKIPST--VREIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPL 126 (394)
T ss_dssp TCTTEEEEECCTT--CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCT
T ss_pred CCCCceEEEeCCC--ccCcchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccC
Confidence 4667777777533 34566666777777777777643 55553 3466666666655543
No 156
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=97.76 E-value=1.4e-05 Score=85.45 Aligned_cols=79 Identities=18% Similarity=0.184 Sum_probs=38.8
Q ss_pred cCCCCccEEEecCCcCc----------ccCccccCCCCCCEEEccCCcccCcccccCCCCCcEEecccCcCccc-Ccccc
Q 002313 254 EGMTELRVLDLTGFRFH----------SLPSSLGCLINLRTLSLENCLVVDVAIIGDLKKLEILSLKHSSIEQL-PREIG 322 (937)
Q Consensus 254 ~~l~~Lr~L~L~~~~~~----------~lp~~i~~l~~Lr~L~L~~~~~~~l~~i~~L~~L~~L~L~~~~l~~l-p~~i~ 322 (937)
.++++||.|.+...... .++..+..+++|+.|.+++|.-..++.+ .+.+|++|++..+.+..- ...++
T Consensus 136 ~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l~l~~~-~~~~L~~L~L~~~~l~~~~l~~l~ 214 (362)
T 2ra8_A 136 EKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNLSIGKK-PRPNLKSLEIISGGLPDSVVEDIL 214 (362)
T ss_dssp HHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTCBCCSC-BCTTCSEEEEECSBCCHHHHHHHH
T ss_pred hhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCceeccc-cCCCCcEEEEecCCCChHHHHHHH
Confidence 45678888888654321 1223344556666666666521122222 255566666655543311 01122
Q ss_pred --cCccCCEEEec
Q 002313 323 --QLTCLKLLDLS 333 (937)
Q Consensus 323 --~L~~L~~L~l~ 333 (937)
.+++|++|+|+
T Consensus 215 ~~~lp~L~~L~L~ 227 (362)
T 2ra8_A 215 GSDLPNLEKLVLY 227 (362)
T ss_dssp HSBCTTCCEEEEE
T ss_pred HccCCCCcEEEEe
Confidence 45555555553
No 157
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=97.75 E-value=1.6e-05 Score=76.34 Aligned_cols=110 Identities=15% Similarity=0.131 Sum_probs=66.2
Q ss_pred hhcCCCCccEEEecCC-cCc-----ccCccccCCCCCCEEEccCCcccC-----c-ccccCCCCCcEEecccCcCcc---
Q 002313 252 FFEGMTELRVLDLTGF-RFH-----SLPSSLGCLINLRTLSLENCLVVD-----V-AIIGDLKKLEILSLKHSSIEQ--- 316 (937)
Q Consensus 252 ~~~~l~~Lr~L~L~~~-~~~-----~lp~~i~~l~~Lr~L~L~~~~~~~-----l-~~i~~L~~L~~L~L~~~~l~~--- 316 (937)
++...+.|++|+|++| .+. .+...+....+|++|+|++|.+.. + ..+...++|++|+|++|.+..
T Consensus 31 ~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~ 110 (185)
T 1io0_A 31 IQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGI 110 (185)
T ss_dssp HHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHH
T ss_pred HHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHH
Confidence 3566777888888877 664 244556667778888888877653 2 344555677777777776652
Q ss_pred --cCcccccCccCCEEEe--cCCCCCcccCh----hhhcCCCCCcEEEcCCCcc
Q 002313 317 --LPREIGQLTCLKLLDL--SNCSKLKEIRP----NVISNLTRLEELYMGNSFT 362 (937)
Q Consensus 317 --lp~~i~~L~~L~~L~l--~~~~~l~~lp~----~~l~~L~~L~~L~l~~~~~ 362 (937)
+...+...++|++|++ ++| .+..-.. ..+...++|++|++++|.+
T Consensus 111 ~~l~~~L~~n~~L~~L~L~~~~N-~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i 163 (185)
T 1io0_A 111 LALVEALQSNTSLIELRIDNQSQ-PLGNNVEMEIANMLEKNTTLLKFGYHFTQQ 163 (185)
T ss_dssp HHHHHGGGGCSSCCEEECCCCSS-CCCHHHHHHHHHHHHHCSSCCEEECCCSSH
T ss_pred HHHHHHHHhCCCceEEEecCCCC-CCCHHHHHHHHHHHHhCCCcCEEeccCCCC
Confidence 4455566667777777 443 2332111 1133445666666666544
No 158
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.60 E-value=8.3e-06 Score=82.38 Aligned_cols=62 Identities=31% Similarity=0.312 Sum_probs=33.7
Q ss_pred cCCCCccEEEecCCcCccc---CccccCCCCCCEEEccCCcccCcccccCCC--CCcEEecccCcCc
Q 002313 254 EGMTELRVLDLTGFRFHSL---PSSLGCLINLRTLSLENCLVVDVAIIGDLK--KLEILSLKHSSIE 315 (937)
Q Consensus 254 ~~l~~Lr~L~L~~~~~~~l---p~~i~~l~~Lr~L~L~~~~~~~l~~i~~L~--~L~~L~L~~~~l~ 315 (937)
.++++|++|+|++|.+..+ |..+..+++|++|+|++|.+..+..+..+. +|++|++++|.+.
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~~l~~l~~l~L~~L~L~~Npl~ 233 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLC 233 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGGGGGGGTTSCCSEEECTTSTTG
T ss_pred hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCchhhhhcccCCcceEEccCCcCc
Confidence 3455666666666665543 344455666666666666655543343333 5555555555443
No 159
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.59 E-value=5e-05 Score=76.68 Aligned_cols=102 Identities=20% Similarity=0.228 Sum_probs=73.1
Q ss_pred cCCCCccE--EEecCCcCcccCcc----ccCCCCCCEEEccCCcccCccc----ccCCCCCcEEecccCcCcccCccccc
Q 002313 254 EGMTELRV--LDLTGFRFHSLPSS----LGCLINLRTLSLENCLVVDVAI----IGDLKKLEILSLKHSSIEQLPREIGQ 323 (937)
Q Consensus 254 ~~l~~Lr~--L~L~~~~~~~lp~~----i~~l~~Lr~L~L~~~~~~~l~~----i~~L~~L~~L~L~~~~l~~lp~~i~~ 323 (937)
.....|+. ++++.|....++.. ..++++|+.|+|++|.+..+.. ++.+++|++|+|++|.++.+ ..+..
T Consensus 138 ~~dp~L~~~~l~l~~N~~~~~~~~l~i~~~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~-~~l~~ 216 (267)
T 3rw6_A 138 RSDPDLVAQNIDVVLNRRSCMAATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE-RELDK 216 (267)
T ss_dssp GGCHHHHHTTCCCCTTSHHHHHHHHHHHHHHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG-GGGGG
T ss_pred CCCcchhhcCccccCCHHHHHHHHHHHHHhhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc-hhhhh
Confidence 33444544 56666654433322 2468899999999999987644 45899999999999999877 34666
Q ss_pred Cc--cCCEEEecCCCCCcccC------hhhhcCCCCCcEEE
Q 002313 324 LT--CLKLLDLSNCSKLKEIR------PNVISNLTRLEELY 356 (937)
Q Consensus 324 L~--~L~~L~l~~~~~l~~lp------~~~l~~L~~L~~L~ 356 (937)
+. +|++|++++|.-...+| ..++..+++|+.|+
T Consensus 217 l~~l~L~~L~L~~Npl~~~~~~~~~y~~~il~~~P~L~~LD 257 (267)
T 3rw6_A 217 IKGLKLEELWLDGNSLCDTFRDQSTYISAIRERFPKLLRLD 257 (267)
T ss_dssp GTTSCCSEEECTTSTTGGGCSSHHHHHHHHHHHCTTCCEES
T ss_pred cccCCcceEEccCCcCccccCcchhHHHHHHHHCcccCeEC
Confidence 66 99999999976434444 23477899999987
No 160
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=97.53 E-value=4e-05 Score=73.57 Aligned_cols=105 Identities=13% Similarity=0.149 Sum_probs=73.1
Q ss_pred CCccceeeecCC-cccc----cCChhhhcCCCCccEEEecCCcCc-----ccCccccCCCCCCEEEccCCcccC-----c
Q 002313 231 FLKLKLFLFFTE-NLSL----QIPDPFFEGMTELRVLDLTGFRFH-----SLPSSLGCLINLRTLSLENCLVVD-----V 295 (937)
Q Consensus 231 ~~~L~~L~l~~~-~~~~----~~~~~~~~~l~~Lr~L~L~~~~~~-----~lp~~i~~l~~Lr~L~L~~~~~~~-----l 295 (937)
.++|++|++.+| .+.. .+. ..+...++|++|+|++|.+. .+...+...++|++|+|++|.+.. +
T Consensus 35 ~~~L~~L~L~~n~~i~~~g~~~l~-~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~l 113 (185)
T 1io0_A 35 DPDLEEVNLNNIMNIPVPTLKACA-EALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILAL 113 (185)
T ss_dssp CTTCCEEECTTCTTCCHHHHHHHH-HHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHH
T ss_pred CCCCCEEEecCCCCCCHHHHHHHH-HHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHHH
Confidence 455666666655 4321 122 22466778899999998875 245556667889999999998764 3
Q ss_pred -ccccCCCCCcEEec--ccCcCcc-----cCcccccCccCCEEEecCCC
Q 002313 296 -AIIGDLKKLEILSL--KHSSIEQ-----LPREIGQLTCLKLLDLSNCS 336 (937)
Q Consensus 296 -~~i~~L~~L~~L~L--~~~~l~~-----lp~~i~~L~~L~~L~l~~~~ 336 (937)
..+...++|++|++ ++|.+.. +...+...++|++|++++|.
T Consensus 114 ~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~ 162 (185)
T 1io0_A 114 VEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQ 162 (185)
T ss_dssp HHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSS
T ss_pred HHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCC
Confidence 56777888999999 7787762 44556677889999998854
No 161
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=97.49 E-value=0.0078 Score=65.55 Aligned_cols=108 Identities=10% Similarity=0.170 Sum_probs=53.7
Q ss_pred CChhhhcCCC-CccEEEecCCcCccc-CccccCCCCCCEEEccCCc---ccCc--ccccCCCCCcEEecccCcCcccC-c
Q 002313 248 IPDPFFEGMT-ELRVLDLTGFRFHSL-PSSLGCLINLRTLSLENCL---VVDV--AIIGDLKKLEILSLKHSSIEQLP-R 319 (937)
Q Consensus 248 ~~~~~~~~l~-~Lr~L~L~~~~~~~l-p~~i~~l~~Lr~L~L~~~~---~~~l--~~i~~L~~L~~L~L~~~~l~~lp-~ 319 (937)
|.+.+|..++ .|+.+.+..+ ++++ ...|.++.+|+.+.+..+. ++.+ ..|..+.+|+.+.+..+ ++.++ .
T Consensus 54 Ig~~aF~~~~~~L~sI~iP~s-vt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~~I~~~ 131 (394)
T 4gt6_A 54 IGDRVFCNYKYVLTSVQIPDT-VTEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VTEIDSE 131 (394)
T ss_dssp ECTTTTTTCCSCCCEEEECTT-CCEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CSEECTT
T ss_pred cCHhhccCCCCcCEEEEECCC-eeEEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-cceehhh
Confidence 4444455543 3555555432 4444 3345555556655555442 2222 34455555555555432 34443 2
Q ss_pred ccccCccCCEEEecCCCCCcccChhhhcCCCCCcEEEcCC
Q 002313 320 EIGQLTCLKLLDLSNCSKLKEIRPNVISNLTRLEELYMGN 359 (937)
Q Consensus 320 ~i~~L~~L~~L~l~~~~~l~~lp~~~l~~L~~L~~L~l~~ 359 (937)
.+....+|+.+.+.. .+..++...+....+|+.+.+..
T Consensus 132 aF~~c~~L~~i~lp~--~~~~I~~~~F~~c~~L~~i~~~~ 169 (394)
T 4gt6_A 132 AFHHCEELDTVTIPE--GVTSVADGMFSYCYSLHTVTLPD 169 (394)
T ss_dssp TTTTCTTCCEEECCT--TCCEECTTTTTTCTTCCEEECCT
T ss_pred hhhhhcccccccccc--eeeeecccceecccccccccccc
Confidence 345556666666643 24555555555666666666543
No 162
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=97.35 E-value=0.014 Score=63.62 Aligned_cols=143 Identities=11% Similarity=0.187 Sum_probs=88.7
Q ss_pred ccceeeecCCcccccCChhhhcCCCCccEEEecCCc---Cccc-CccccCCCCCCEEEccCCcccCc--ccccCCCCCcE
Q 002313 233 KLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFR---FHSL-PSSLGCLINLRTLSLENCLVVDV--AIIGDLKKLEI 306 (937)
Q Consensus 233 ~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~---~~~l-p~~i~~l~~Lr~L~L~~~~~~~l--~~i~~L~~L~~ 306 (937)
.|+.+.+... ...+...+|.++.+|+.+.+..+. ++.+ ...|..+.+|+.+.+..+ ++.+ ..+..+.+|+.
T Consensus 65 ~L~sI~iP~s--vt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~~I~~~aF~~c~~L~~ 141 (394)
T 4gt6_A 65 VLTSVQIPDT--VTEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VTEIDSEAFHHCEELDT 141 (394)
T ss_dssp CCCEEEECTT--CCEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CSEECTTTTTTCTTCCE
T ss_pred cCEEEEECCC--eeEEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-cceehhhhhhhhccccc
Confidence 4677777543 345667778888888888887653 5556 345777778877776544 3333 56777888888
Q ss_pred EecccCcCcccC-cccccCccCCEEEecCCCCCcccChhhhcCCCCCcEEEcCCCcccceecCCCCCChhhhcCCCCCCe
Q 002313 307 LSLKHSSIEQLP-REIGQLTCLKLLDLSNCSKLKEIRPNVISNLTRLEELYMGNSFTQWKVEGQSNASLGELKQLSRLTT 385 (937)
Q Consensus 307 L~L~~~~l~~lp-~~i~~L~~L~~L~l~~~~~l~~lp~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~ 385 (937)
+.+..+ +..++ ..+....+|+.+.+.. .+..+....+.. .+|+.+.+...... .....+..+..+..
T Consensus 142 i~lp~~-~~~I~~~~F~~c~~L~~i~~~~--~~~~I~~~aF~~-~~l~~i~ip~~~~~--------i~~~af~~c~~l~~ 209 (394)
T 4gt6_A 142 VTIPEG-VTSVADGMFSYCYSLHTVTLPD--SVTAIEERAFTG-TALTQIHIPAKVTR--------IGTNAFSECFALST 209 (394)
T ss_dssp EECCTT-CCEECTTTTTTCTTCCEEECCT--TCCEECTTTTTT-CCCSEEEECTTCCE--------ECTTTTTTCTTCCE
T ss_pred ccccce-eeeecccceecccccccccccc--eeeEeccccccc-cceeEEEECCcccc--------cccchhhhccccce
Confidence 888643 44444 3466778888888765 366666665543 56777776543221 12233445555665
Q ss_pred EEeec
Q 002313 386 LEVHI 390 (937)
Q Consensus 386 L~l~~ 390 (937)
.....
T Consensus 210 ~~~~~ 214 (394)
T 4gt6_A 210 ITSDS 214 (394)
T ss_dssp EEECC
T ss_pred ecccc
Confidence 55443
No 163
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=94.96 E-value=0.13 Score=55.29 Aligned_cols=102 Identities=15% Similarity=0.266 Sum_probs=48.2
Q ss_pred hcCCCCccEEEecCCcCccc-CccccCCCCCCEEEccCCcccCc--ccccCCCCCcEEecccCcCcccCc-ccccCccCC
Q 002313 253 FEGMTELRVLDLTGFRFHSL-PSSLGCLINLRTLSLENCLVVDV--AIIGDLKKLEILSLKHSSIEQLPR-EIGQLTCLK 328 (937)
Q Consensus 253 ~~~l~~Lr~L~L~~~~~~~l-p~~i~~l~~Lr~L~L~~~~~~~l--~~i~~L~~L~~L~L~~~~l~~lp~-~i~~L~~L~ 328 (937)
|.....|+.+.+..+ +..+ ...+..+.+|+.+.+..+ ++.+ ..+.++.+|+.+.+.. .++.++. .+..+.+|+
T Consensus 213 f~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~-~i~~i~~~aF~~c~~L~ 289 (379)
T 4h09_A 213 FSYGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYA-KVKTVPYLLCSGCSNLT 289 (379)
T ss_dssp TTTCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECC-CCSEECTTTTTTCTTCC
T ss_pred cccccccceeeeccc-eeEEccccccCCccceEEEcCCC-ccEeCccccceeehhccccccc-cceeccccccccccccc
Confidence 444555555555432 2222 223444555555555433 2222 3444555555555543 2444432 344555555
Q ss_pred EEEecCCCCCcccChhhhcCCCCCcEEEcC
Q 002313 329 LLDLSNCSKLKEIRPNVISNLTRLEELYMG 358 (937)
Q Consensus 329 ~L~l~~~~~l~~lp~~~l~~L~~L~~L~l~ 358 (937)
.+.+.. ..++.++...+.++.+|+.+.+.
T Consensus 290 ~i~l~~-~~i~~I~~~aF~~c~~L~~i~lp 318 (379)
T 4h09_A 290 KVVMDN-SAIETLEPRVFMDCVKLSSVTLP 318 (379)
T ss_dssp EEEECC-TTCCEECTTTTTTCTTCCEEECC
T ss_pred cccccc-cccceehhhhhcCCCCCCEEEcC
Confidence 555544 23555555555555555555554
No 164
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=93.86 E-value=0.089 Score=46.39 Aligned_cols=33 Identities=36% Similarity=0.405 Sum_probs=14.1
Q ss_pred CccEEEecCCcCcccCc-cccCCCCCCEEEccCC
Q 002313 258 ELRVLDLTGFRFHSLPS-SLGCLINLRTLSLENC 290 (937)
Q Consensus 258 ~Lr~L~L~~~~~~~lp~-~i~~l~~Lr~L~L~~~ 290 (937)
+|++|+|++|.++.+|. .|..+.+|++|+|++|
T Consensus 32 ~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N 65 (130)
T 3rfe_A 32 DTTELVLTGNNLTALPPGLLDALPALRTAHLGAN 65 (130)
T ss_dssp TCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSS
T ss_pred CCCEEECCCCcCCccChhhhhhccccCEEEecCC
Confidence 34444444444444432 2333444444444444
No 165
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=93.83 E-value=0.26 Score=52.98 Aligned_cols=125 Identities=22% Similarity=0.194 Sum_probs=96.1
Q ss_pred CCCccceeeecCCcccccCChhhhcCCCCccEEEecCCcCccc-CccccCCCCCCEEEccCCcccCc--ccccCCCCCcE
Q 002313 230 GFLKLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHSL-PSSLGCLINLRTLSLENCLVVDV--AIIGDLKKLEI 306 (937)
Q Consensus 230 ~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~l-p~~i~~l~~Lr~L~L~~~~~~~l--~~i~~L~~L~~ 306 (937)
.+.+++.+.+..+ ...+....|..+..|+.+.+..+ ++.+ ...|.++.+|+.+.+..+ +..+ ..|..+.+|+.
T Consensus 215 ~~~~l~~i~~~~~--~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~ 290 (379)
T 4h09_A 215 YGKNLKKITITSG--VTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCSNLTK 290 (379)
T ss_dssp TCSSCSEEECCTT--CCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CSEECTTTTTTCTTCCE
T ss_pred cccccceeeeccc--eeEEccccccCCccceEEEcCCC-ccEeCccccceeehhcccccccc-ceecccccccccccccc
Confidence 4567777776544 34556667888999999999765 6666 445778889999998654 4433 67888999999
Q ss_pred EecccCcCcccC-cccccCccCCEEEecCCCCCcccChhhhcCCCCCcEEEcCCC
Q 002313 307 LSLKHSSIEQLP-REIGQLTCLKLLDLSNCSKLKEIRPNVISNLTRLEELYMGNS 360 (937)
Q Consensus 307 L~L~~~~l~~lp-~~i~~L~~L~~L~l~~~~~l~~lp~~~l~~L~~L~~L~l~~~ 360 (937)
+.+.++.++.++ ..+.++.+|+.+.+.. .++.++...+.++++|+.+.+..+
T Consensus 291 i~l~~~~i~~I~~~aF~~c~~L~~i~lp~--~l~~I~~~aF~~C~~L~~i~ip~~ 343 (379)
T 4h09_A 291 VVMDNSAIETLEPRVFMDCVKLSSVTLPT--ALKTIQVYAFKNCKALSTISYPKS 343 (379)
T ss_dssp EEECCTTCCEECTTTTTTCTTCCEEECCT--TCCEECTTTTTTCTTCCCCCCCTT
T ss_pred ccccccccceehhhhhcCCCCCCEEEcCc--cccEEHHHHhhCCCCCCEEEECCc
Confidence 999888888887 4578889999999975 488888888899999999888654
No 166
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=93.61 E-value=0.11 Score=45.92 Aligned_cols=55 Identities=16% Similarity=0.280 Sum_probs=41.2
Q ss_pred EEecccCcCc--ccCcccccCccCCEEEecCCCCCcccChhhhcCCCCCcEEEcCCCccc
Q 002313 306 ILSLKHSSIE--QLPREIGQLTCLKLLDLSNCSKLKEIRPNVISNLTRLEELYMGNSFTQ 363 (937)
Q Consensus 306 ~L~L~~~~l~--~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~l~~L~~L~~L~l~~~~~~ 363 (937)
+++.+++.++ .+|..+. .+|++|+|++ +.+..+|.+.+..+++|++|++.+|...
T Consensus 12 ~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~-N~l~~l~~~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTAFP--VDTTELVLTG-NNLTALPPGLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp EEECCSSCCCTTTSCSCCC--TTCSEEECTT-SCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred EEEeCCCCCccccCCCCCC--cCCCEEECCC-CcCCccChhhhhhccccCEEEecCCCee
Confidence 5667777777 7776543 4688888888 4588888887888888888888887543
No 167
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=92.97 E-value=0.11 Score=49.27 Aligned_cols=82 Identities=20% Similarity=0.263 Sum_probs=46.7
Q ss_pred hcCCCCccEEEecCC-cCc-----ccCccccCCCCCCEEEccCCcccC-----c-ccccCCCCCcEEecccCcCc-----
Q 002313 253 FEGMTELRVLDLTGF-RFH-----SLPSSLGCLINLRTLSLENCLVVD-----V-AIIGDLKKLEILSLKHSSIE----- 315 (937)
Q Consensus 253 ~~~l~~Lr~L~L~~~-~~~-----~lp~~i~~l~~Lr~L~L~~~~~~~-----l-~~i~~L~~L~~L~L~~~~l~----- 315 (937)
...-..|+.|+|+++ .+. .+-+.+..-.+|+.|+|++|.+.+ + ..+..-+.|++|+|++|.|.
T Consensus 37 l~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ 116 (197)
T 1pgv_A 37 REDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLA 116 (197)
T ss_dssp HTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHH
T ss_pred HhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHH
Confidence 344556777777764 553 234445556677777777777652 2 33445566777777777665
Q ss_pred ccCcccccCccCCEEEecC
Q 002313 316 QLPREIGQLTCLKLLDLSN 334 (937)
Q Consensus 316 ~lp~~i~~L~~L~~L~l~~ 334 (937)
.+-..+..-+.|++|++++
T Consensus 117 ala~aL~~N~tL~~L~L~n 135 (197)
T 1pgv_A 117 RLLRSTLVTQSIVEFKADN 135 (197)
T ss_dssp HHHHHTTTTCCCSEEECCC
T ss_pred HHHHHHhhCCceeEEECCC
Confidence 2222233334466666654
No 168
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=90.09 E-value=0.2 Score=47.47 Aligned_cols=82 Identities=11% Similarity=0.063 Sum_probs=54.5
Q ss_pred hcCCCCccEEEecCCcCc-----ccCccccCCCCCCEEEccCCcccC-----c-ccccCCCCCcEEecccCcC---c---
Q 002313 253 FEGMTELRVLDLTGFRFH-----SLPSSLGCLINLRTLSLENCLVVD-----V-AIIGDLKKLEILSLKHSSI---E--- 315 (937)
Q Consensus 253 ~~~l~~Lr~L~L~~~~~~-----~lp~~i~~l~~Lr~L~L~~~~~~~-----l-~~i~~L~~L~~L~L~~~~l---~--- 315 (937)
+..-..|+.|+|++|.+. .+-+.+..-+.|++|+|++|.+.. + ..+..-+.|++|+|+++.. .
T Consensus 66 L~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala~aL~~N~tL~~L~L~n~~~~~ig~~g 145 (197)
T 1pgv_A 66 ACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQV 145 (197)
T ss_dssp HTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHH
T ss_pred HhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHHHHHhhCCceeEEECCCCcCcCcCHHH
Confidence 355667888899888875 344455566789999999988763 2 5566667799999976533 2
Q ss_pred --ccCcccccCccCCEEEecC
Q 002313 316 --QLPREIGQLTCLKLLDLSN 334 (937)
Q Consensus 316 --~lp~~i~~L~~L~~L~l~~ 334 (937)
.+-..+..-+.|+.|+++.
T Consensus 146 ~~~ia~aL~~N~tL~~L~l~~ 166 (197)
T 1pgv_A 146 EMDMMMAIEENESLLRVGISF 166 (197)
T ss_dssp HHHHHHHHHHCSSCCEEECCC
T ss_pred HHHHHHHHHhCCCcCeEeccC
Confidence 1222344446677777654
No 169
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=89.64 E-value=1.3 Score=47.94 Aligned_cols=151 Identities=13% Similarity=0.014 Sum_probs=86.5
Q ss_pred ccCCCCCHHHHHHHHHHHh---CCCCCCCchhHHHHHHHHhcC------CCchHHHHHHHH-h--c---C--C-ChhHHH
Q 002313 10 FLDWLLSNEEASHLFEKIV---GHSAKKSDFETIGVEIVAKCG------GLPIAIKTIANA-L--K---N--K-SPRIWK 71 (937)
Q Consensus 10 ~~l~~L~~~~~~~lf~~~~---~~~~~~~~~~~i~~~i~~kc~------GlPLai~~ig~~-L--~---~--~-~~~~W~ 71 (937)
+++++++.+|.+++|..++ +... .--.+....|+++++ |.|..+..+... . . + . +.+.+.
T Consensus 210 i~l~~l~~~e~~~ll~~~~~~~~~~~--~~~~~~~~~i~~~~~~~~~~~G~p~~~~~l~~~a~~~a~~~~~~~i~~~~v~ 287 (412)
T 1w5s_A 210 LHLPAYKSRELYTILEQRAELGLRDT--VWEPRHLELISDVYGEDKGGDGSARRAIVALKMACEMAEAMGRDSLSEDLVR 287 (412)
T ss_dssp EECCCCCHHHHHHHHHHHHHHHBCTT--SCCHHHHHHHHHHHCGGGTSCCCHHHHHHHHHHHHHHHHHTTCSSCCHHHHH
T ss_pred eeeCCCCHHHHHHHHHHHHHhcCCCC--CCChHHHHHHHHHHHHhccCCCcHHHHHHHHHHHHHHHHHcCCCCCCHHHHH
Confidence 8999999999999998776 3221 112467788888898 999765544332 1 1 1 1 455565
Q ss_pred HHHHHhhcCCCCCccccccccccccccccccCchhHHHHHHHhcCCC--CCCcccHHHHHHHHhhc--ccccCc-chHHH
Q 002313 72 DAVNQLSNSNPRKIQGMDADLSSIELSYEFLKCKEVKSLFQLCGLLK--DGSRIAVDDLLRYVMGL--RLLTNA-DTLEA 146 (937)
Q Consensus 72 ~~l~~l~~~~~~~~~~~~~~~~~l~~sY~~L~~~~lk~cfl~~~~fp--~~~~i~~~~li~~w~a~--g~~~~~-~~~~~ 146 (937)
.+...... ...+.-++..||.+ .+.++..++.+. .+..+...++...|..- ...... -..
T Consensus 288 ~~~~~~~~------------~~~~~~~l~~l~~~-~~~~l~aia~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 352 (412)
T 1w5s_A 288 KAVSENEA------------ASIQTHELEALSIH-ELIILRLIAEATLGGMEWINAGLLRQRYEDASLTMYNVKPRGY-- 352 (412)
T ss_dssp HHHHHC------------------CCSSSSSCHH-HHHHHHHHHHHHHTTCSSBCHHHHHHHHHHHHHHHSCCCCCCH--
T ss_pred HHHHHHhc------------cchHHHHHHcCCHH-HHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHhhcCCCCCCH--
Confidence 55553210 12345567889988 688888888654 33456666665544211 111100 011
Q ss_pred HHHHHHHHHHHHhhccccccc----CCCCceeeehhh
Q 002313 147 ARNRVHTLIDNLKSASLLFDG----DSEDHAKMHRII 179 (937)
Q Consensus 147 ~~~~~~~~~~~L~~~~~~~~~----~~~~~~~mhd~i 179 (937)
....+++++|++.+++... +..+.|++|++.
T Consensus 353 --~~~~~~l~~L~~~gli~~~~~~~~~~g~~~~~~l~ 387 (412)
T 1w5s_A 353 --TQYHIYLKHLTSLGLVDAKPSGRGMRGRTTLFRLA 387 (412)
T ss_dssp --HHHHHHHHHHHHTTSEEEECC-------CCEEEEC
T ss_pred --HHHHHHHHHHHhCCCEEeecccCCCCCceeEEEeC
Confidence 2234578899999998643 233456666665
No 170
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=75.54 E-value=2 Score=45.30 Aligned_cols=146 Identities=10% Similarity=0.091 Sum_probs=83.4
Q ss_pred CcccCCCCCHHHHHHHHHHHhC-CCCCCCchhHHHHHHHHhcCCCchHHHHHHHHhcCC-ChhHHHH-HHHHhhcCCCCC
Q 002313 8 EDFLDWLLSNEEASHLFEKIVG-HSAKKSDFETIGVEIVAKCGGLPIAIKTIANALKNK-SPRIWKD-AVNQLSNSNPRK 84 (937)
Q Consensus 8 ~~~~l~~L~~~~~~~lf~~~~~-~~~~~~~~~~i~~~i~~kc~GlPLai~~ig~~L~~~-~~~~W~~-~l~~l~~~~~~~ 84 (937)
..+++.+|+.+|+.+++...++ .....+.. .+|+++++|.|+++..++..+... +...|-. +.+.....
T Consensus 202 ~~i~l~~l~~~e~~~~l~~~~~~~~~~~~~~----~~i~~~t~G~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~---- 273 (357)
T 2fna_A 202 STVELKPFSREEAIEFLRRGFQEADIDFKDY----EVVYEKIGGIPGWLTYFGFIYLDNKNLDFAINQTLEYAKKL---- 273 (357)
T ss_dssp EEEEECCCCHHHHHHHHHHHHHHHTCCCCCH----HHHHHHHCSCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHH----
T ss_pred ceeecCCCCHHHHHHHHHHHHHHcCCCCCcH----HHHHHHhCCCHHHHHHHHHHHccccchHHHHHHHHHHHHHH----
Confidence 5789999999999999998762 11122222 889999999999999999877532 3333321 11111000
Q ss_pred ccccccccccccccc--cccCchhHHHHHHHhcCCCCCCcccHHHHHHHHh-hccc-ccCcchHHHHHHHHHHHHHHHhh
Q 002313 85 IQGMDADLSSIELSY--EFLKCKEVKSLFQLCGLLKDGSRIAVDDLLRYVM-GLRL-LTNADTLEAARNRVHTLIDNLKS 160 (937)
Q Consensus 85 ~~~~~~~~~~l~~sY--~~L~~~~lk~cfl~~~~fp~~~~i~~~~li~~w~-a~g~-~~~~~~~~~~~~~~~~~~~~L~~ 160 (937)
+...+ -.+.| ..+|.. .+..+..+|. +. +...+..... ..|. + .. ....++++.|++
T Consensus 274 ---~~~~l--~~~~~~~~~l~~~-~~~~l~~la~---g~--~~~~l~~~~~~~~g~~~----~~----~~~~~~L~~L~~ 334 (357)
T 2fna_A 274 ---ILKEF--ENFLHGREIARKR-YLNIMRTLSK---CG--KWSDVKRALELEEGIEI----SD----SEIYNYLTQLTK 334 (357)
T ss_dssp ---HHHHH--HHHHTTCGGGHHH-HHHHHHHHTT---CB--CHHHHHHHHHHHHCSCC----CH----HHHHHHHHHHHH
T ss_pred ---HHHHH--HHHhhccccccHH-HHHHHHHHHc---CC--CHHHHHHHHHHhcCCCC----CH----HHHHHHHHHHHh
Confidence 00000 01111 157776 6888888887 32 4444432211 1121 1 11 123356888999
Q ss_pred cccccccCCCCcee-eehhhHHH
Q 002313 161 ASLLFDGDSEDHAK-MHRIIHAI 182 (937)
Q Consensus 161 ~~~~~~~~~~~~~~-mhd~i~~l 182 (937)
.+++...+ +.|+ .|.++++.
T Consensus 335 ~gli~~~~--~~y~f~~~~~~~~ 355 (357)
T 2fna_A 335 HSWIIKEG--EKYCPSEPLISLA 355 (357)
T ss_dssp TTSEEESS--SCEEESSHHHHHH
T ss_pred CCCEEecC--CEEEecCHHHHHh
Confidence 99987653 3466 46666653
No 171
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=69.14 E-value=6.3 Score=41.18 Aligned_cols=149 Identities=13% Similarity=0.102 Sum_probs=83.1
Q ss_pred CcccCCCCCHHHHHHHHHHHhCCCCCCCchhHHHHHHHHhcCCCchHHHHHHHHhcC-CChhHH-HHHHHHhhcCCCCCc
Q 002313 8 EDFLDWLLSNEEASHLFEKIVGHSAKKSDFETIGVEIVAKCGGLPIAIKTIANALKN-KSPRIW-KDAVNQLSNSNPRKI 85 (937)
Q Consensus 8 ~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~i~~~i~~kc~GlPLai~~ig~~L~~-~~~~~W-~~~l~~l~~~~~~~~ 85 (937)
..+++.+|+.+|+.+++...++...... -.+...+|++.++|.|+++..++..+.. .+...| ..+.+.....
T Consensus 196 ~~i~l~pl~~~e~~~~l~~~~~~~~~~~-~~~~~~~i~~~tgG~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~----- 269 (350)
T 2qen_A 196 GEVLVKPFDKDTSVEFLKRGFREVNLDV-PENEIEEAVELLDGIPGWLVVFGVEYLRNGDFGRAMKRTLEVAKGL----- 269 (350)
T ss_dssp EEEECCCCCHHHHHHHHHHHHHTTTCCC-CHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHH-----
T ss_pred ceeeCCCCCHHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHhCCCHHHHHHHHHHHhccccHhHHHHHHHHHHHHH-----
Confidence 4789999999999999988762211111 1357789999999999999999876532 232222 1111111000
Q ss_pred cccccccccccccccccCchhHHHHHHHhcCCCCCCcccHHHHHHHHhhcccccCcchHHHHHHHHHHHHHHHhhccccc
Q 002313 86 QGMDADLSSIELSYEFLKCKEVKSLFQLCGLLKDGSRIAVDDLLRYVMGLRLLTNADTLEAARNRVHTLIDNLKSASLLF 165 (937)
Q Consensus 86 ~~~~~~~~~l~~sY~~L~~~~lk~cfl~~~~fp~~~~i~~~~li~~w~a~g~~~~~~~~~~~~~~~~~~~~~L~~~~~~~ 165 (937)
+...+ -.+.+ . +.. .+..+..+|. + .+...++.....+.. .. -.... ..++++.|++.+++.
T Consensus 270 --~~~~l--~~l~~-~-~~~-~~~~l~~la~---g-~~~~~~l~~~~~~~~--~~-~~~~~----~~~~l~~L~~~gli~ 331 (350)
T 2qen_A 270 --IMGEL--EELRR-R-SPR-YVDILRAIAL---G-YNRWSLIRDYLAVKG--TK-IPEPR----LYALLENLKKMNWIV 331 (350)
T ss_dssp --HHHHH--HHHHH-H-CHH-HHHHHHHHHT---T-CCSHHHHHHHHHHTT--CC-CCHHH----HHHHHHHHHHTTSEE
T ss_pred --HHHHH--HHHHh-C-Chh-HHHHHHHHHh---C-CCCHHHHHHHHHHHh--CC-CCHHH----HHHHHHHHHhCCCEE
Confidence 00001 11112 2 555 6888888887 2 245555554432211 00 01112 235688898999987
Q ss_pred ccCCCCceee-ehhhHHH
Q 002313 166 DGDSEDHAKM-HRIIHAI 182 (937)
Q Consensus 166 ~~~~~~~~~m-hd~i~~l 182 (937)
..+ +.|++ |.++++.
T Consensus 332 ~~~--~~y~~~~p~~~~~ 347 (350)
T 2qen_A 332 EED--NTYKIADPVVATV 347 (350)
T ss_dssp EET--TEEEESSHHHHHH
T ss_pred ecC--CEEEEecHHHHHH
Confidence 642 34555 5555543
No 172
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=63.72 E-value=11 Score=38.85 Aligned_cols=70 Identities=11% Similarity=-0.040 Sum_probs=47.0
Q ss_pred CCCcccCCCCCHHHHHHHHHHHhCCCCCCCchhHHHHHHHHhcCCCchHHHHHHHHhc------C--C-ChhHHHHHHHH
Q 002313 6 YSEDFLDWLLSNEEASHLFEKIVGHSAKKSDFETIGVEIVAKCGGLPIAIKTIANALK------N--K-SPRIWKDAVNQ 76 (937)
Q Consensus 6 ~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~i~~~i~~kc~GlPLai~~ig~~L~------~--~-~~~~W~~~l~~ 76 (937)
.+..+.+..++.+|..+++...+..... .--.+....++++++|.|-.+..+...+. + . +.+....++..
T Consensus 159 ~~~~i~l~~~~~~e~~~~l~~~~~~~~~-~~~~~~~~~l~~~~~G~~r~l~~~l~~~~~~a~~~~~~~i~~~~~~~~~~~ 237 (324)
T 1hqc_A 159 FGIVEHLEYYTPEELAQGVMRDARLLGV-RITEEAALEIGRRSRGTMRVAKRLFRRVRDFAQVAGEEVITRERALEALAA 237 (324)
T ss_dssp CSCEEECCCCCHHHHHHHHHHHHHTTTC-CCCHHHHHHHHHHSCSCHHHHHHHHHHHTTTSTTTSCSCCCHHHHHHHHHH
T ss_pred ccEEEecCCCCHHHHHHHHHHHHHhcCC-CCCHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHH
Confidence 3467899999999999999998832111 11236778899999999987766554432 1 1 45555555554
No 173
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=49.17 E-value=93 Score=32.50 Aligned_cols=138 Identities=12% Similarity=-0.009 Sum_probs=75.8
Q ss_pred CcccCCCCCHHHHHHHHHHHhCC-CCCCCchhHHHHHHHHhcC---CCch-HHHHHHHHh--c---CC-ChhHHHHHHHH
Q 002313 8 EDFLDWLLSNEEASHLFEKIVGH-SAKKSDFETIGVEIVAKCG---GLPI-AIKTIANAL--K---NK-SPRIWKDAVNQ 76 (937)
Q Consensus 8 ~~~~l~~L~~~~~~~lf~~~~~~-~~~~~~~~~i~~~i~~kc~---GlPL-ai~~ig~~L--~---~~-~~~~W~~~l~~ 76 (937)
..+++++++.++..++|+.++.. -....--.+..+.|+++++ |.|- |+..+.... . .. +.+++..++++
T Consensus 190 ~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~i~~~~~~~~G~~r~a~~~l~~a~~~a~~~~~i~~~~v~~~~~~ 269 (384)
T 2qby_B 190 PSVIFKPYDAEQLKFILSKYAEYGLIKGTYDDEILSYIAAISAKEHGDARKAVNLLFRAAQLASGGGIIRKEHVDKAIVD 269 (384)
T ss_dssp CEEEECCCCHHHHHHHHHHHHHHTSCTTSCCSHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTSSSCCCHHHHHHHHHH
T ss_pred CeEEECCCCHHHHHHHHHHHHHhhcccCCcCHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhcCCCccCHHHHHHHHHH
Confidence 38999999999999999998721 1111111345667777777 8776 444443332 1 23 88889988886
Q ss_pred hhcCCCCCccccccccccccccccccCchhHHHHHHHhcCCCCCCcccHHHHHHHHhhcccccCcchHHHHHHHHHHHHH
Q 002313 77 LSNSNPRKIQGMDADLSSIELSYEFLKCKEVKSLFQLCGLLKDGSRIAVDDLLRYVMGLRLLTNADTLEAARNRVHTLID 156 (937)
Q Consensus 77 l~~~~~~~~~~~~~~~~~l~~sY~~L~~~~lk~cfl~~~~fp~~~~i~~~~li~~w~a~g~~~~~~~~~~~~~~~~~~~~ 156 (937)
... ..+.-+++.|+.+ -|..+..++....+..+. +.....--+.| +.. .+ ...+.+++.
T Consensus 270 ~~~-------------~~~~~~~~~l~~~-~~~~l~al~~~~~~~~~~-~~~~~~~~~~g-~~~-~~----~~~~~~~l~ 328 (384)
T 2qby_B 270 YEQ-------------ERLIEAVKALPFH-YKLALRSLIESEDVMSAH-KMYTDLCNKFK-QKP-LS----YRRFSDIIS 328 (384)
T ss_dssp HHH-------------HHHHHHHHSSCHH-HHHHHHHHHTCCBHHHHH-HHHHHHHHHTT-CCC-CC----HHHHHHHHH
T ss_pred Hhc-------------chHHHHHHcCCHH-HHHHHHHHHHhcccChHH-HHHHHHHHHcC-CCC-CC----HHHHHHHHH
Confidence 431 2244567778876 344444444411101111 01111111222 111 11 123446788
Q ss_pred HHhhcccccc
Q 002313 157 NLKSASLLFD 166 (937)
Q Consensus 157 ~L~~~~~~~~ 166 (937)
.|...+++..
T Consensus 329 ~L~~~gli~~ 338 (384)
T 2qby_B 329 ELDMFGIVKI 338 (384)
T ss_dssp HHHHTTSEEE
T ss_pred HHHhCCCEEE
Confidence 8999999864
No 174
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=45.94 E-value=23 Score=34.15 Aligned_cols=54 Identities=13% Similarity=0.045 Sum_probs=40.3
Q ss_pred CcccCCCCCHHHHHHHHHHHhCCCCCCCchhHHHHHHHHhcCCCchHHHHHHHHh
Q 002313 8 EDFLDWLLSNEEASHLFEKIVGHSAKKSDFETIGVEIVAKCGGLPIAIKTIANAL 62 (937)
Q Consensus 8 ~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~i~~~i~~kc~GlPLai~~ig~~L 62 (937)
..+++++++++|.++++...+..... .--.+....|+++|+|.|..+..+...+
T Consensus 178 ~~i~l~~l~~~e~~~~l~~~~~~~~~-~~~~~~~~~l~~~~~G~~~~~~~~~~~~ 231 (250)
T 1njg_A 178 LQFHLKALDVEQIRHQLEHILNEEHI-AHEPRALQLLARAAEGSLRDALSLTDQA 231 (250)
T ss_dssp EEEECCCCCHHHHHHHHHHHHHHTTC-CBCHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred hhccCCCCCHHHHHHHHHHHHHhcCC-CCCHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 47899999999999999998832111 1113567889999999999888765443
No 175
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=43.32 E-value=68 Score=33.58 Aligned_cols=136 Identities=12% Similarity=0.080 Sum_probs=79.3
Q ss_pred CcccCCCCCHHHHHHHHHHHhC---C-CCCCCchhHHHHHHHHhcC---CCc-hHHHHHHHHhc-------CC-ChhHHH
Q 002313 8 EDFLDWLLSNEEASHLFEKIVG---H-SAKKSDFETIGVEIVAKCG---GLP-IAIKTIANALK-------NK-SPRIWK 71 (937)
Q Consensus 8 ~~~~l~~L~~~~~~~lf~~~~~---~-~~~~~~~~~i~~~i~~kc~---GlP-Lai~~ig~~L~-------~~-~~~~W~ 71 (937)
..+.+++++.++..+++...+. . ....+ +..+.|+++++ |.| .|+.++..+.. .. +.++++
T Consensus 194 ~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~G~~r~~~~~l~~a~~~a~~~~~~~i~~~~v~ 270 (387)
T 2v1u_A 194 VELVFPPYTAPQLRDILETRAEEAFNPGVLDP---DVVPLCAALAAREHGDARRALDLLRVAGEIAERRREERVRREHVY 270 (387)
T ss_dssp EECCBCCCCHHHHHHHHHHHHHHHBCTTTBCS---SHHHHHHHHHHSSSCCHHHHHHHHHHHHHHHHHTTCSCBCHHHHH
T ss_pred eEEeeCCCCHHHHHHHHHHHHHhhccCCCCCH---HHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHcCCCCcCHHHHH
Confidence 3789999999999999999862 2 12222 35567777776 999 44444333321 22 788888
Q ss_pred HHHHHhhcCCCCCccccccccccccccccccCchhHHHHHHHhc-CCCCCCcccHHHHHHHHh----hcccccCcchHHH
Q 002313 72 DAVNQLSNSNPRKIQGMDADLSSIELSYEFLKCKEVKSLFQLCG-LLKDGSRIAVDDLLRYVM----GLRLLTNADTLEA 146 (937)
Q Consensus 72 ~~l~~l~~~~~~~~~~~~~~~~~l~~sY~~L~~~~lk~cfl~~~-~fp~~~~i~~~~li~~w~----a~g~~~~~~~~~~ 146 (937)
.+++.... ..+.-++..||.+ -+..+...+ ++-....+...++.+... ..| +...
T Consensus 271 ~a~~~~~~-------------~~~~~~~~~l~~~-~~~~l~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~----- 330 (387)
T 2v1u_A 271 SARAEIER-------------DRVSEVVRTLPLH-AKLVLLSIMMLEDGGRPASTGEIYERYKELTSTLG-LEHV----- 330 (387)
T ss_dssp HHHHHHHH-------------HHHHHHHHSSCHH-HHHHHHHHHHHSSSSCCEEHHHHHHHHHHHHHHTT-CCCC-----
T ss_pred HHHHHHhh-------------chHHHHHHcCCHH-HHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhcC-CCCC-----
Confidence 88776431 1234457788877 354444444 343223455554444322 223 1111
Q ss_pred HHHHHHHHHHHHhhcccccc
Q 002313 147 ARNRVHTLIDNLKSASLLFD 166 (937)
Q Consensus 147 ~~~~~~~~~~~L~~~~~~~~ 166 (937)
....+.++++.|...+++..
T Consensus 331 ~~~~~~~~l~~L~~~gli~~ 350 (387)
T 2v1u_A 331 TLRRVSGIISELDMLGIVKS 350 (387)
T ss_dssp CHHHHHHHHHHHHHTTSEEE
T ss_pred CHHHHHHHHHHHHhCCCeEE
Confidence 12344567888888888864
No 176
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=26.02 E-value=84 Score=25.57 Aligned_cols=49 Identities=6% Similarity=0.150 Sum_probs=37.9
Q ss_pred CCCCCCchhHHHHHHHHhcCCCchHHHHHHHHhcCC--ChhHHHHHHHHhh
Q 002313 30 HSAKKSDFETIGVEIVAKCGGLPIAIKTIANALKNK--SPRIWKDAVNQLS 78 (937)
Q Consensus 30 ~~~~~~~~~~i~~~i~~kc~GlPLai~~ig~~L~~~--~~~~W~~~l~~l~ 78 (937)
+-.|.|....-|-+..++.+..|+|++++-+.=... ..+.|..++++|+
T Consensus 40 DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~~~~~~iY~~~lqElk 90 (109)
T 1v54_E 40 DLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGPHKEIYPYVIQELR 90 (109)
T ss_dssp SBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCTTHHHHHHHHHH
T ss_pred ccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCchhhHHHHHHHHh
Confidence 346788888999999999999999999987765322 3334888888765
No 177
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=24.83 E-value=2.5e+02 Score=29.08 Aligned_cols=138 Identities=9% Similarity=-0.054 Sum_probs=78.3
Q ss_pred cccCCCCCHHHHHHHHHHHhCC-CCCCCchhHHHHHHHHhc---------CCCchHH-HHHHHHhc-----CC---ChhH
Q 002313 9 DFLDWLLSNEEASHLFEKIVGH-SAKKSDFETIGVEIVAKC---------GGLPIAI-KTIANALK-----NK---SPRI 69 (937)
Q Consensus 9 ~~~l~~L~~~~~~~lf~~~~~~-~~~~~~~~~i~~~i~~kc---------~GlPLai-~~ig~~L~-----~~---~~~~ 69 (937)
.+++++++.++..+++...+.. .....--.+....|++++ +|.|-.+ ..+..... +. +.++
T Consensus 187 ~i~~~pl~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~G~~r~~~~~l~~a~~~a~~~~~~~i~~~~ 266 (389)
T 1fnn_A 187 VIRFSPYTKDQIFDILLDRAKAGLAEGSYSEDILQMIADITGAQTPLDTNRGDARLAIDILYRSAYAAQQNGRKHIAPED 266 (389)
T ss_dssp EEECCCCBHHHHHHHHHHHHHHHBCTTSSCHHHHHHHHHHHSBSSTTCTTSCCHHHHHHHHHHHHHHHHHTTCSSCCHHH
T ss_pred eEEeCCCCHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHHHHHHHHHHhCCCCcCHHH
Confidence 6899999999999999998721 001111235777888888 7877443 33332221 21 4444
Q ss_pred HHHHHHHhhcCCCCCccccccccccccccccccCchhHHHHHHHhcCCC---CCCcccHHHHHHHHhh----cccccCcc
Q 002313 70 WKDAVNQLSNSNPRKIQGMDADLSSIELSYEFLKCKEVKSLFQLCGLLK---DGSRIAVDDLLRYVMG----LRLLTNAD 142 (937)
Q Consensus 70 W~~~l~~l~~~~~~~~~~~~~~~~~l~~sY~~L~~~~lk~cfl~~~~fp---~~~~i~~~~li~~w~a----~g~~~~~~ 142 (937)
...+...... ..+.-.+..||.+ -|..+..++.+. ++..+...++...+.. .|... ..
T Consensus 267 v~~~~~~~~~-------------~~~~~~l~~l~~~-~~~~L~~l~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~-~~ 331 (389)
T 1fnn_A 267 VRKSSKEVLF-------------GISEEVLIGLPLH-EKLFLLAIVRSLKISHTPYITFGDAEESYKIVCEEYGERP-RV 331 (389)
T ss_dssp HHHHHHHHSC-------------CCCHHHHHHSCHH-HHHHHHHHHHHHHHHCSSCEEHHHHHHHHHHHHHHTTCCC-CC
T ss_pred HHHHHHHHhh-------------hhHHHHHHcCCHH-HHHHHHHHHHHHhhccCCCccHHHHHHHHHHHHHHcCCCC-CC
Confidence 4444443221 1233346778877 466665566443 2325666666665432 22111 01
Q ss_pred hHHHHHHHHHHHHHHHhhcccccc
Q 002313 143 TLEAARNRVHTLIDNLKSASLLFD 166 (937)
Q Consensus 143 ~~~~~~~~~~~~~~~L~~~~~~~~ 166 (937)
...+.+++.+|...+++..
T Consensus 332 -----~~~~~~~l~~L~~~gli~~ 350 (389)
T 1fnn_A 332 -----HSQLWSYLNDLREKGIVET 350 (389)
T ss_dssp -----HHHHHHHHHHHHHTTSSEE
T ss_pred -----HHHHHHHHHHHHhCCCeEE
Confidence 1334567899999999865
Done!