BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 002314
(937 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2WTX|A Chain A, Insight Into The Mechanism Of Enzymatic Glycosyltransfer
With Retention Through The Synthesis And Analysis Of
Bisubstrate Glycomimetics Of Trehalose-6-Phosphate
Synthase
pdb|2WTX|B Chain B, Insight Into The Mechanism Of Enzymatic Glycosyltransfer
With Retention Through The Synthesis And Analysis Of
Bisubstrate Glycomimetics Of Trehalose-6-Phosphate
Synthase
pdb|2WTX|C Chain C, Insight Into The Mechanism Of Enzymatic Glycosyltransfer
With Retention Through The Synthesis And Analysis Of
Bisubstrate Glycomimetics Of Trehalose-6-Phosphate
Synthase
pdb|2WTX|D Chain D, Insight Into The Mechanism Of Enzymatic Glycosyltransfer
With Retention Through The Synthesis And Analysis Of
Bisubstrate Glycomimetics Of Trehalose-6-Phosphate
Synthase
Length = 474
Score = 248 bits (633), Expect = 1e-65, Method: Compositional matrix adjust.
Identities = 163/485 (33%), Positives = 242/485 (49%), Gaps = 29/485 (5%)
Query: 95 RLLVVANRLPVSAIRRGEDSWSLEISAGGLVSALLG-VKEFEARWIGWAGVNVPDEIGQK 153
RL+VV+NR+ SAGGL +LG +K W GW+G ++ K
Sbjct: 3 RLVVVSNRIAPPDEHAA--------SAGGLAVGILGALKAAGGLWFGWSGETGNEDQPLK 54
Query: 154 ALTKALAEKRCIPVFLDEDIVHQYYNGYCNNILWPLFHYLGLPQEDRLATTRSFQSQFAA 213
+ K L E + +YYN + N +LWP FHY RL + + +
Sbjct: 55 KVKKG--NITWASFNLSEQDLDEYYNQFSNAVLWPAFHY-------RLDLVQFQRPAWDG 105
Query: 214 YIKANQMFADVVNKHYKDGDVVWCHDYHLMFLPKCLKEYNSDMKVGWFLHTPFPSSEIHR 273
Y++ N + AD + +D D++W HDYHL+ L++ + ++G+FLH PFP+ EI
Sbjct: 106 YLRVNALLADKLLPLLQDDDIIWIHDYHLLPFAHELRKRGVNNRIGFFLHIPFPTPEIFN 165
Query: 274 TLPXXXXXXXXXXXXXXXGFHTYDYARHFV---SACTRILGFEGTPEGVEDQGRLTRVAA 330
LP GF T + F+ S TR+ G+ R
Sbjct: 166 ALPTYDTLLEQLCDYDLLGFQTENDRLAFLDCLSNLTRVTTRSAKSHTA--WGKAFRTEV 223
Query: 331 FPIGIDSERFIRALEINPVQVHIKELQETFAGRKVMLGVDRLDMIKGIPQKLLAFEKFLE 390
+PIGI+ + + P+ + +L+ + + V+RLD KG+P++ LA+E LE
Sbjct: 224 YPIGIEPKEIAKQ-AAGPLPPKLAQLKAELKNVQNIFSVERLDYSKGLPERFLAYEALLE 282
Query: 391 ENSDWRGKVVLLQIAVPTRTDVPEYQRLTSQVHEIVGRINGRFGTLTAVPIHHLDRSLDF 450
+ GK+ QIA +R DV YQ + Q+ GRING++G L P+++L++ D
Sbjct: 283 KYPQHHGKIRYTQIAPTSRGDVQAYQDIRHQLENEAGRINGKYGQLGWTPLYYLNQHFDR 342
Query: 451 PALCALYAVTDVALVTSLRDGMNLVSYEFVACQD-LKKGVLILSEFAGAAQSLGAGAILV 509
L ++ +DV LVT LRDGMNLV+ E+VA QD GVL+LS+FAGAA L A++V
Sbjct: 343 KLLMKIFRYSDVGLVTPLRDGMNLVAKEYVAAQDPANPGVLVLSQFAGAANEL-TSALIV 401
Query: 510 NPWNITEVANAIARALNMSPEEREKRHWHNFTHVTTHTAQEWAETFVSELNDTV---VEA 566
NP++ EVA A+ RAL MS ER RH + + W E F+S+L V E+
Sbjct: 402 NPYDRDEVAAALDRALTMSLAERISRHAEMLDVIVKNDINHWQECFISDLKQIVPRSAES 461
Query: 567 QLRIK 571
Q R K
Sbjct: 462 QQRDK 466
>pdb|1UQU|A Chain A, Trehalose-6-Phosphate From E. Coli Bound With Udp-Glucose.
pdb|1UQU|B Chain B, Trehalose-6-Phosphate From E. Coli Bound With Udp-Glucose.
pdb|1UQT|A Chain A, Trehalose-6-Phosphate From E. Coli Bound With Udp-2-Fluoro
Glucose.
pdb|1UQT|B Chain B, Trehalose-6-Phosphate From E. Coli Bound With Udp-2-Fluoro
Glucose
Length = 482
Score = 248 bits (633), Expect = 1e-65, Method: Compositional matrix adjust.
Identities = 163/485 (33%), Positives = 242/485 (49%), Gaps = 29/485 (5%)
Query: 95 RLLVVANRLPVSAIRRGEDSWSLEISAGGLVSALLG-VKEFEARWIGWAGVNVPDEIGQK 153
RL+VV+NR+ SAGGL +LG +K W GW+G ++ K
Sbjct: 3 RLVVVSNRIAPPDEHAA--------SAGGLAVGILGALKAAGGLWFGWSGETGNEDQPLK 54
Query: 154 ALTKALAEKRCIPVFLDEDIVHQYYNGYCNNILWPLFHYLGLPQEDRLATTRSFQSQFAA 213
+ K L E + +YYN + N +LWP FHY RL + + +
Sbjct: 55 KVKKG--NITWASFNLSEQDLDEYYNQFSNAVLWPAFHY-------RLDLVQFQRPAWDG 105
Query: 214 YIKANQMFADVVNKHYKDGDVVWCHDYHLMFLPKCLKEYNSDMKVGWFLHTPFPSSEIHR 273
Y++ N + AD + +D D++W HDYHL+ L++ + ++G+FLH PFP+ EI
Sbjct: 106 YLRVNALLADKLLPLLQDDDIIWIHDYHLLPFAHELRKRGVNNRIGFFLHIPFPTPEIFN 165
Query: 274 TLPXXXXXXXXXXXXXXXGFHTYDYARHFV---SACTRILGFEGTPEGVEDQGRLTRVAA 330
LP GF T + F+ S TR+ G+ R
Sbjct: 166 ALPTYDTLLEQLCDYDLLGFQTENDRLAFLDCLSNLTRVTTRSAKSHTA--WGKAFRTEV 223
Query: 331 FPIGIDSERFIRALEINPVQVHIKELQETFAGRKVMLGVDRLDMIKGIPQKLLAFEKFLE 390
+PIGI+ + + P+ + +L+ + + V+RLD KG+P++ LA+E LE
Sbjct: 224 YPIGIEPKEIAKQ-AAGPLPPKLAQLKAELKNVQNIFSVERLDYSKGLPERFLAYEALLE 282
Query: 391 ENSDWRGKVVLLQIAVPTRTDVPEYQRLTSQVHEIVGRINGRFGTLTAVPIHHLDRSLDF 450
+ GK+ QIA +R DV YQ + Q+ GRING++G L P+++L++ D
Sbjct: 283 KYPQHHGKIRYTQIAPTSRGDVQAYQDIRHQLENEAGRINGKYGQLGWTPLYYLNQHFDR 342
Query: 451 PALCALYAVTDVALVTSLRDGMNLVSYEFVACQD-LKKGVLILSEFAGAAQSLGAGAILV 509
L ++ +DV LVT LRDGMNLV+ E+VA QD GVL+LS+FAGAA L A++V
Sbjct: 343 KLLMKIFRYSDVGLVTPLRDGMNLVAKEYVAAQDPANPGVLVLSQFAGAANEL-TSALIV 401
Query: 510 NPWNITEVANAIARALNMSPEEREKRHWHNFTHVTTHTAQEWAETFVSELNDTV---VEA 566
NP++ EVA A+ RAL MS ER RH + + W E F+S+L V E+
Sbjct: 402 NPYDRDEVAAALDRALTMSLAERISRHAEMLDVIVKNDINHWQECFISDLKQIVPRSAES 461
Query: 567 QLRIK 571
Q R K
Sbjct: 462 QQRDK 466
>pdb|1GZ5|A Chain A, Trehalose-6-Phosphate Synthase. Otsa
pdb|1GZ5|B Chain B, Trehalose-6-Phosphate Synthase. Otsa
pdb|1GZ5|C Chain C, Trehalose-6-Phosphate Synthase. Otsa
pdb|1GZ5|D Chain D, Trehalose-6-Phosphate Synthase. Otsa
Length = 456
Score = 241 bits (616), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 157/474 (33%), Positives = 235/474 (49%), Gaps = 26/474 (5%)
Query: 95 RLLVVANRLPVSAIRRGEDSWSLEISAGGLVSALLG-VKEFEARWIGWAGVNVPDEIGQK 153
RL+VV+NR+ SAGGL +LG +K W GW+G ++ K
Sbjct: 2 RLVVVSNRIAPPDEHAA--------SAGGLAVGILGALKAAGGLWFGWSGETGNEDQPLK 53
Query: 154 ALTKALAEKRCIPVFLDEDIVHQYYNGYCNNILWPLFHYLGLPQEDRLATTRSFQSQFAA 213
+ K L E + +YYN + N +LWP FHY RL + + +
Sbjct: 54 KVKKG--NITWASFNLSEQDLDEYYNQFSNAVLWPAFHY-------RLDLVQFQRPAWDG 104
Query: 214 YIKANQMFADVVNKHYKDGDVVWCHDYHLMFLPKCLKEYNSDMKVGWFLHTPFPSSEIHR 273
Y++ N + AD + +D D++W HDYHL+ L++ + ++G+FLH PFP+ EI
Sbjct: 105 YLRVNALLADKLLPLLQDDDIIWIHDYHLLPFAHELRKRGVNNRIGFFLHIPFPTPEIFN 164
Query: 274 TLPXXXXXXXXXXXXXXXGFHTYDYARHFV---SACTRILGFEGTPEGVEDQGRLTRVAA 330
LP GF T + F+ S TR+ G+ R
Sbjct: 165 ALPTYDTLLEQLCDYDLLGFQTENDRLAFLDCLSNLTRVTTRSAKSHTA--WGKAFRTEV 222
Query: 331 FPIGIDSERFIRALEINPVQVHIKELQETFAGRKVMLGVDRLDMIKGIPQKLLAFEKFLE 390
+PIGI+ + + P+ + +L+ + + V+RLD KG+P++ LA+E LE
Sbjct: 223 YPIGIEPKEIAKQ-AAGPLPPKLAQLKAELKNVQNIFSVERLDYSKGLPERFLAYEALLE 281
Query: 391 ENSDWRGKVVLLQIAVPTRTDVPEYQRLTSQVHEIVGRINGRFGTLTAVPIHHLDRSLDF 450
+ GK+ QIA +R DV YQ + Q+ GRING++G L P+++L++ D
Sbjct: 282 KYPQHHGKIRYTQIAPTSRGDVQAYQDIRHQLENEAGRINGKYGQLGWTPLYYLNQHFDR 341
Query: 451 PALCALYAVTDVALVTSLRDGMNLVSYEFVACQD-LKKGVLILSEFAGAAQSLGAGAILV 509
L ++ +DV LVT LRDG NLV+ E+VA QD GVL+LS+FAGAA L A++V
Sbjct: 342 KLLXKIFRYSDVGLVTPLRDGXNLVAKEYVAAQDPANPGVLVLSQFAGAANEL-TSALIV 400
Query: 510 NPWNITEVANAIARALNMSPEEREKRHWHNFTHVTTHTAQEWAETFVSELNDTV 563
NP++ EVA A+ RAL S ER RH + + W E F+S+L V
Sbjct: 401 NPYDRDEVAAALDRALTXSLAERISRHAEXLDVIVKNDINHWQECFISDLKQIV 454
>pdb|3T5T|A Chain A, Vall From Streptomyces Hygroscopicus In Apo Form
pdb|3T5T|B Chain B, Vall From Streptomyces Hygroscopicus In Apo Form
Length = 496
Score = 81.3 bits (199), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 104/419 (24%), Positives = 167/419 (39%), Gaps = 34/419 (8%)
Query: 114 SWSLEISAGGLVSALLGVKEFEARWIGWAGVNVPDEIGQKAL-----TKALAEKRCIPVF 168
+W G +V+ GV WI A + D+ AL T L R I V
Sbjct: 27 AWLAPGGTGNVVAEQAGVLNIS--WI--ASADSEDDRRASALNPDGVTMELHSGREILVR 82
Query: 169 L---DEDIVHQYYNGYCNNILWPLFHYLGLPQEDRLATTRSFQSQFAAYIKANQMFADVV 225
L D + N N++W +Y G + + + + +A + + + FAD +
Sbjct: 83 LIRHDPAVFRNVQNFMTANLMWAANNY-GWDRWTQPSFGSDAREGWADFGRFTRDFADAI 141
Query: 226 NKH-YKDGDVVW-CHDYHLMFLPKCLKEYNSDMKVGWFLHTPFPSSEIHRTLPXXXXXXX 283
K + D V+ HDY L+ +P L+E D + F+H P+PS++ R LP
Sbjct: 142 LKSSAQSADPVYLVHDYQLVGVPALLREQRPDAPILLFVHIPWPSADYWRILPKEIRTGI 201
Query: 284 XXXX--XXXXGFHTYDYARHFVSACTRILG---FEGTPEGVEDQGRLTRVAAFPIGIDSE 338
GF + R+F+ + +L + VE +G TR+ P+G
Sbjct: 202 LHGMLPATTIGFFADRWCRNFLESVADLLPDARIDREAMTVEWRGHRTRLRTMPLGYSP- 260
Query: 339 RFIRALEINPVQVHIKELQETFA-GRKVMLGVDRLDMIKGIPQKLLAFEKFLEENSDWRG 397
L ++ + E E +A G ++++ R D IK + + AF L
Sbjct: 261 -----LTLDGRNPQLPEGIEEWADGHRLVVHSGRTDPIKNAERAVRAF--VLAARGGGLE 313
Query: 398 KVVLLQIAVPTRTDVPEYQRLTSQVHEIVGRINGRFGTLTAVPIHHLDRSLDFPALCALY 457
K +L P R VP +V V N G+ T +D D A +
Sbjct: 314 KTRMLVRMNPNRLYVPANADYVHRVETAVAEANAELGSDTV----RIDNDNDVNHTIACF 369
Query: 458 AVTDVALVTSLRDGMNLVSYEFVACQDLKKGVLILSEFAGAAQSLGAGAILVNPWNITE 516
D+ + S DG NL ++E + + +ILSE GAA+ LG VNP+++ E
Sbjct: 370 RRADLLIFNSTVDGQNLSTFEAPLVNE-RDADVILSETCGAAEVLGEYCRSVNPFDLVE 427
>pdb|4F96|B Chain B, Crystal Structure Of Vlde, The Pseudo-Glycosyltransferase,
In Complex With Gdp
pdb|4F96|A Chain A, Crystal Structure Of Vlde, The Pseudo-Glycosyltransferase,
In Complex With Gdp
pdb|4F97|A Chain A, Crystal Structure Of Vlde, The Pseudo-Glycosyltransferase,
In Complex With Gdp And Validoxylamine A 7'-Phosphate
pdb|4F97|B Chain B, Crystal Structure Of Vlde, The Pseudo-Glycosyltransferase,
In Complex With Gdp And Validoxylamine A 7'-Phosphate
pdb|4F9F|A Chain A, Crystal Structure Of Vlde, The Pseudo-Glycosyltransferase,
In Complex With Gdp And Trehalose
pdb|4F9F|B Chain B, Crystal Structure Of Vlde, The Pseudo-Glycosyltransferase,
In Complex With Gdp And Trehalose
pdb|4F9F|C Chain C, Crystal Structure Of Vlde, The Pseudo-Glycosyltransferase,
In Complex With Gdp And Trehalose
pdb|4F9F|D Chain D, Crystal Structure Of Vlde, The Pseudo-Glycosyltransferase,
In Complex With Gdp And Trehalose
pdb|4F9F|E Chain E, Crystal Structure Of Vlde, The Pseudo-Glycosyltransferase,
In Complex With Gdp And Trehalose
pdb|4F9F|F Chain F, Crystal Structure Of Vlde, The Pseudo-Glycosyltransferase,
In Complex With Gdp And Trehalose
pdb|3VDM|A Chain A, Crystal Structure Of Vlde, The Pseudo-Glycosyltransferase
Which Catalyzes Non-Glycosidic C-N Coupling In
Validamycin A Biosynthesis
pdb|3VDM|B Chain B, Crystal Structure Of Vlde, The Pseudo-Glycosyltransferase
Which Catalyzes Non-Glycosidic C-N Coupling In
Validamycin A Biosynthesis
pdb|3VDN|B Chain B, Crystal Structure Of Vlde, The Pseudo-Glycosyltransferase,
In Complex With Gdp
Length = 497
Score = 80.9 bits (198), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 87/355 (24%), Positives = 145/355 (40%), Gaps = 22/355 (6%)
Query: 170 DEDIVHQYYNGYCNNILWPLFHYLGLPQEDRLATTRSFQSQFAAYIKANQMFADVVNKH- 228
D + N N++W +Y G + + + + +A + + + FAD + K
Sbjct: 88 DPAVFRNVQNFMTANLMWAANNY-GWDRWTQPSFGSDAREGWADFGRFTRDFADAILKSS 146
Query: 229 YKDGDVVW-CHDYHLMFLPKCLKEYNSDMKVGWFLHTPFPSSEIHRTLPXXXXXXXXXXX 287
+ D V+ HDY L+ +P L+E D + F+H P+PS++ R LP
Sbjct: 147 AQSADPVYLVHDYQLVGVPALLREQRPDAPILLFVHIPWPSADYWRILPKEIRTGILHGM 206
Query: 288 --XXXXGFHTYDYARHFVSACTRILG---FEGTPEGVEDQGRLTRVAAFPIGIDSERFIR 342
GF + R+F+ + +L + VE +G TR+ P+G
Sbjct: 207 LPATTIGFFADRWCRNFLESVADLLPDARIDREAMTVEWRGHRTRLRTMPLGYSP----- 261
Query: 343 ALEINPVQVHIKELQETFA-GRKVMLGVDRLDMIKGIPQKLLAFEKFLEENSDWRGKVVL 401
L ++ + E E +A G ++++ R D IK + + AF L K +
Sbjct: 262 -LTLDGRNPQLPEGIEEWADGHRLVVHSGRTDPIKNAERAVRAF--VLAARGGGLEKTRM 318
Query: 402 LQIAVPTRTDVPEYQRLTSQVHEIVGRINGRFGTLTAVPIHHLDRSLDFPALCALYAVTD 461
L P R VP +V V N G+ T +D D A + D
Sbjct: 319 LVRMNPNRLYVPANADYVHRVETAVAEANAELGSDTV----RIDNDNDVNHTIACFRRAD 374
Query: 462 VALVTSLRDGMNLVSYEFVACQDLKKGVLILSEFAGAAQSLGAGAILVNPWNITE 516
+ + S DG NL ++E + + +ILSE GAA+ LG VNP+++ E
Sbjct: 375 LLIFNSTVDGQNLSTFEAPLVNE-RDADVILSETCGAAEVLGEYCRSVNPFDLVE 428
>pdb|3T7D|A Chain A, Vall From Streptomyces Hygroscopicus In Complex With
Trehalose
pdb|3T7D|B Chain B, Vall From Streptomyces Hygroscopicus In Complex With
Trehalose
Length = 497
Score = 78.6 bits (192), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 105/419 (25%), Positives = 166/419 (39%), Gaps = 34/419 (8%)
Query: 114 SWSLEISAGGLVSALLGVKEFEARWIGWAGVNVPDEIGQKAL-----TKALAEKRCIPVF 168
+W G +V+ GV WI A + D+ AL T L R I V
Sbjct: 28 AWLAPGGTGNVVAEQAGV--LNISWI--ASADSEDDRRASALNPDGVTXELHSGREILVR 83
Query: 169 L---DEDIVHQYYNGYCNNILWPLFHYLGLPQEDRLATTRSFQSQFAAYIKANQMFADVV 225
L D + N N+ W +Y G + + + + +A + + + FAD +
Sbjct: 84 LIRHDPAVFRNVQNFXTANLXWAANNY-GWDRWTQPSFGSDAREGWADFGRFTRDFADAI 142
Query: 226 NKH-YKDGDVVW-CHDYHLMFLPKCLKEYNSDMKVGWFLHTPFPSSEIHRTLPXXXXXXX 283
K + D V+ HDY L+ +P L+E D + F+H P+PS++ R LP
Sbjct: 143 LKSSAQSADPVYLVHDYQLVGVPALLREQRPDAPILLFVHIPWPSADYWRILPKEIRTGI 202
Query: 284 XXXX--XXXXGFHTYDYARHFVSACTRILG---FEGTPEGVEDQGRLTRVAAFPIGIDSE 338
GF + R+F+ + +L + VE +G TR+ P+G
Sbjct: 203 LHGXLPATTIGFFADRWCRNFLESVADLLPDARIDREAXTVEWRGHRTRLRTXPLGYSP- 261
Query: 339 RFIRALEINPVQVHIKELQETFA-GRKVMLGVDRLDMIKGIPQKLLAFEKFLEENSDWRG 397
L ++ + E E +A G ++++ R D IK + + AF L
Sbjct: 262 -----LTLDGRNPQLPEGIEEWADGHRLVVHSGRTDPIKNAERAVRAF--VLAARGGGLE 314
Query: 398 KVVLLQIAVPTRTDVPEYQRLTSQVHEIVGRINGRFGTLTAVPIHHLDRSLDFPALCALY 457
K L P R VP +V V N G+ T +D D A +
Sbjct: 315 KTRXLVRXNPNRLYVPANADYVHRVETAVAEANAELGSDTV----RIDNDNDVNHTIACF 370
Query: 458 AVTDVALVTSLRDGMNLVSYEFVACQDLKKGVLILSEFAGAAQSLGAGAILVNPWNITE 516
D+ + S DG NL ++E + + +ILSE GAA+ LG VNP+++ E
Sbjct: 371 RRADLLIFNSTVDGQNLSTFEAPLVNE-RDADVILSETCGAAEVLGEYCRSVNPFDLVE 428
>pdb|2KRR|A Chain A, Solution Structure Of The Rbd1,2 Domains From Human
Nucleoli
Length = 180
Score = 31.6 bits (70), Expect = 2.3, Method: Composition-based stats.
Identities = 26/75 (34%), Positives = 36/75 (48%), Gaps = 8/75 (10%)
Query: 25 KIERDLRKSSRASHPNDVTDNGGREVFEDEQRLR----DGDNLGPSIVDEDLEGPASTPN 80
K ERD R + P VT + +EVFED +R DG + G + ++ E A
Sbjct: 88 KKERDARTLLAKNLPYKVTQDELKEVFEDAAEIRLVSKDGKSKGIAYIEFKTEADAEKTF 147
Query: 81 E---GCERLDGRTFS 92
E G E +DGR+ S
Sbjct: 148 EEKQGTE-IDGRSIS 161
>pdb|2CDU|A Chain A, The Crystal Structure Of Water-Forming Nad(P)h Oxidase
From Lactobacillus Sanfranciscensis
pdb|2CDU|B Chain B, The Crystal Structure Of Water-Forming Nad(P)h Oxidase
From Lactobacillus Sanfranciscensis
Length = 452
Score = 31.6 bits (70), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 34/76 (44%), Gaps = 17/76 (22%)
Query: 722 YKYADVEFGRIQARDMLQHLWTGPISNASVEVVQGSKSVEVRAVGVTKGAAIDRILAEIV 781
YKY D EF I A+D H V +V GSK V D I+ + +
Sbjct: 186 YKYFDKEFTDILAKDYEAH---------GVNLVLGSKVAAFEEVD-------DEIITKTL 229
Query: 782 HSKKMKTAIDYVLCIG 797
K++K+ I +LCIG
Sbjct: 230 DGKEIKSDI-AILCIG 244
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.135 0.409
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 28,244,297
Number of Sequences: 62578
Number of extensions: 1202866
Number of successful extensions: 2591
Number of sequences better than 100.0: 13
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 2573
Number of HSP's gapped (non-prelim): 13
length of query: 937
length of database: 14,973,337
effective HSP length: 108
effective length of query: 829
effective length of database: 8,214,913
effective search space: 6810162877
effective search space used: 6810162877
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 56 (26.2 bits)