Query 002315
Match_columns 937
No_of_seqs 622 out of 3349
Neff 5.9
Searched_HMMs 46136
Date Thu Mar 28 21:19:36 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002315.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/002315hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1859 Leucine-rich repeat pr 100.0 2.9E-93 6.3E-98 812.1 7.8 878 5-918 1-955 (1096)
2 KOG0444 Cytoskeletal regulator 99.9 1.9E-23 4.2E-28 237.2 -1.0 269 25-322 31-328 (1255)
3 KOG4194 Membrane glycoprotein 99.9 1.2E-22 2.6E-27 230.5 3.3 255 66-324 152-430 (873)
4 PLN00113 leucine-rich repeat r 99.8 2.3E-20 4.9E-25 235.3 16.8 242 67-323 122-369 (968)
5 KOG4194 Membrane glycoprotein 99.8 1.1E-21 2.3E-26 222.9 3.8 286 25-323 77-378 (873)
6 PLN00113 leucine-rich repeat r 99.8 3.2E-20 7E-25 233.9 16.6 253 67-323 168-441 (968)
7 KOG0444 Cytoskeletal regulator 99.8 2.1E-21 4.5E-26 220.8 -1.2 289 25-321 54-373 (1255)
8 KOG0472 Leucine-rich repeat pr 99.7 9.3E-20 2E-24 200.4 -4.6 242 25-296 67-310 (565)
9 KOG0472 Leucine-rich repeat pr 99.7 4.2E-19 9.2E-24 195.3 -7.8 229 78-326 82-313 (565)
10 KOG1259 Nischarin, modulator o 99.7 2.5E-17 5.5E-22 175.8 5.5 303 13-335 126-452 (490)
11 PRK15387 E3 ubiquitin-protein 99.7 2.9E-16 6.3E-21 191.2 14.3 250 22-328 197-463 (788)
12 PRK15370 E3 ubiquitin-protein 99.6 3.6E-16 7.7E-21 191.0 11.9 264 22-333 174-438 (754)
13 KOG0618 Serine/threonine phosp 99.6 2.8E-17 6E-22 195.7 2.0 268 27-323 242-513 (1081)
14 KOG4237 Extracellular matrix p 99.6 8.7E-17 1.9E-21 177.2 4.3 269 75-349 57-385 (498)
15 PRK15387 E3 ubiquitin-protein 99.6 2E-15 4.3E-20 184.0 13.4 234 26-298 222-460 (788)
16 KOG0618 Serine/threonine phosp 99.6 7.6E-17 1.6E-21 192.0 0.4 254 28-299 47-423 (1081)
17 PF14580 LRR_9: Leucine-rich r 99.6 2.2E-15 4.8E-20 154.2 4.4 157 177-337 6-165 (175)
18 PLN03210 Resistant to P. syrin 99.5 3.9E-14 8.4E-19 182.2 16.2 243 65-319 613-878 (1153)
19 KOG4237 Extracellular matrix p 99.5 9.7E-16 2.1E-20 169.1 0.7 229 70-300 74-363 (498)
20 PLN03210 Resistant to P. syrin 99.5 7.3E-14 1.6E-18 179.6 17.5 285 25-321 588-904 (1153)
21 PRK15370 E3 ubiquitin-protein 99.5 2.6E-14 5.6E-19 174.9 11.2 219 68-324 183-402 (754)
22 KOG0617 Ras suppressor protein 99.5 1.4E-15 3.1E-20 152.0 -0.1 127 170-298 58-188 (264)
23 cd00116 LRR_RI Leucine-rich re 99.5 4E-14 8.6E-19 155.3 7.7 56 78-133 42-103 (319)
24 cd00116 LRR_RI Leucine-rich re 99.5 5.3E-14 1.2E-18 154.3 7.8 246 78-329 14-297 (319)
25 KOG0617 Ras suppressor protein 99.4 2.5E-14 5.5E-19 143.2 -3.6 161 160-326 25-189 (264)
26 KOG3207 Beta-tubulin folding c 99.3 6.4E-13 1.4E-17 148.7 3.8 252 77-337 111-379 (505)
27 KOG0532 Leucine-rich repeat (L 99.2 9.4E-13 2E-17 151.0 -5.2 192 64-293 76-270 (722)
28 PF14580 LRR_9: Leucine-rich r 99.1 4.2E-11 9.1E-16 122.9 6.0 134 197-333 3-136 (175)
29 KOG0532 Leucine-rich repeat (L 99.1 2.4E-11 5.2E-16 139.7 1.7 176 109-299 73-250 (722)
30 KOG2982 Uncharacterized conser 99.0 1.9E-10 4.2E-15 123.9 4.8 221 82-337 66-304 (418)
31 COG4886 Leucine-rich repeat (L 99.0 4.3E-10 9.2E-15 128.4 6.4 127 167-296 162-290 (394)
32 COG4886 Leucine-rich repeat (L 99.0 4.7E-10 1E-14 128.0 6.1 182 82-275 111-294 (394)
33 KOG0531 Protein phosphatase 1, 99.0 1.1E-10 2.3E-15 135.0 0.5 228 81-326 89-321 (414)
34 KOG1259 Nischarin, modulator o 98.9 2.6E-10 5.6E-15 122.8 0.6 131 189-325 282-414 (490)
35 KOG3207 Beta-tubulin folding c 98.9 1.2E-10 2.6E-15 130.8 -2.8 212 107-327 117-343 (505)
36 KOG1909 Ran GTPase-activating 98.8 1.4E-09 3E-14 119.7 3.6 237 68-323 35-311 (382)
37 KOG0531 Protein phosphatase 1, 98.8 3.5E-10 7.7E-15 130.7 -1.2 218 84-323 69-290 (414)
38 KOG1644 U2-associated snRNP A' 98.6 3.3E-08 7.1E-13 102.2 5.3 118 214-334 43-162 (233)
39 KOG1909 Ran GTPase-activating 98.6 2.1E-08 4.7E-13 110.5 3.7 222 79-326 22-286 (382)
40 KOG1859 Leucine-rich repeat pr 98.4 1.1E-08 2.5E-13 120.4 -5.1 130 192-328 165-297 (1096)
41 KOG2123 Uncharacterized conser 98.3 5.1E-08 1.1E-12 104.7 -2.5 118 212-332 18-137 (388)
42 PLN03150 hypothetical protein; 98.3 8.1E-07 1.8E-11 108.2 7.1 104 88-224 419-526 (623)
43 PF13855 LRR_8: Leucine rich r 98.3 6.5E-07 1.4E-11 75.7 3.2 59 236-295 1-61 (61)
44 PLN03150 hypothetical protein; 98.2 1.7E-06 3.7E-11 105.5 7.8 104 112-248 419-527 (623)
45 PF13855 LRR_8: Leucine rich r 98.1 1.4E-06 3.1E-11 73.5 3.0 58 168-225 1-61 (61)
46 KOG1644 U2-associated snRNP A' 98.0 6.1E-06 1.3E-10 85.8 5.5 124 171-295 22-152 (233)
47 KOG2982 Uncharacterized conser 98.0 5.1E-06 1.1E-10 90.4 4.6 203 65-297 73-291 (418)
48 KOG4658 Apoptotic ATPase [Sign 97.9 2.3E-06 4.9E-11 107.4 0.6 205 80-296 564-807 (889)
49 KOG4579 Leucine-rich repeat (L 97.9 9.2E-07 2E-11 86.9 -3.4 109 211-325 51-161 (177)
50 KOG4658 Apoptotic ATPase [Sign 97.9 1.2E-05 2.6E-10 101.1 4.9 179 85-273 543-732 (889)
51 COG5238 RNA1 Ran GTPase-activa 97.7 2.2E-05 4.8E-10 84.6 4.1 218 81-324 24-286 (388)
52 KOG2120 SCF ubiquitin ligase, 97.7 7.7E-07 1.7E-11 96.6 -6.9 174 111-293 185-373 (419)
53 COG5238 RNA1 Ran GTPase-activa 97.7 1.4E-05 3E-10 86.2 1.7 172 79-271 84-285 (388)
54 KOG4579 Leucine-rich repeat (L 97.6 4.8E-06 1E-10 82.0 -2.9 130 169-300 28-163 (177)
55 PF12799 LRR_4: Leucine Rich r 97.6 8E-05 1.7E-09 59.5 4.0 41 169-209 2-42 (44)
56 KOG2739 Leucine-rich acidic nu 97.5 5.8E-05 1.2E-09 81.3 3.5 115 189-325 41-156 (260)
57 PF12799 LRR_4: Leucine Rich r 97.5 0.0001 2.3E-09 58.8 3.3 38 237-274 2-40 (44)
58 PRK15386 type III secretion pr 97.1 0.0018 3.9E-08 74.9 9.8 42 83-128 48-89 (426)
59 PRK15386 type III secretion pr 97.1 0.0012 2.5E-08 76.4 8.1 19 107-125 48-66 (426)
60 KOG3665 ZYG-1-like serine/thre 97.0 0.0004 8.7E-09 85.6 3.1 80 167-246 147-230 (699)
61 KOG3665 ZYG-1-like serine/thre 96.9 0.00067 1.5E-08 83.6 4.5 101 169-270 123-232 (699)
62 KOG2120 SCF ubiquitin ligase, 96.9 0.00022 4.7E-09 78.1 -0.5 172 65-268 187-373 (419)
63 KOG2739 Leucine-rich acidic nu 96.8 0.00063 1.4E-08 73.5 1.9 62 166-227 63-130 (260)
64 KOG2123 Uncharacterized conser 96.6 0.00018 3.8E-09 78.1 -3.1 101 168-289 19-123 (388)
65 PF13306 LRR_5: Leucine rich r 95.5 0.043 9.3E-07 52.3 7.2 113 166-285 10-128 (129)
66 KOG3763 mRNA export factor TAP 94.5 0.013 2.8E-07 69.2 0.8 90 233-325 215-314 (585)
67 PF13306 LRR_5: Leucine rich r 94.4 0.083 1.8E-06 50.3 5.9 103 82-222 7-112 (129)
68 KOG4308 LRR-containing protein 94.1 0.0014 3E-08 77.7 -8.3 181 89-298 89-305 (478)
69 KOG1947 Leucine rich repeat pr 91.7 0.17 3.7E-06 58.7 4.3 39 83-121 184-224 (482)
70 KOG4308 LRR-containing protein 90.7 0.017 3.6E-07 68.7 -5.3 170 76-273 104-305 (478)
71 PF00560 LRR_1: Leucine Rich R 88.3 0.27 5.8E-06 33.4 1.4 21 169-189 1-21 (22)
72 KOG0473 Leucine-rich repeat pr 88.2 0.024 5.1E-07 60.8 -5.9 87 208-296 37-124 (326)
73 KOG4341 F-box protein containi 87.3 0.24 5.1E-06 57.2 1.0 229 82-319 185-435 (483)
74 PF00560 LRR_1: Leucine Rich R 85.6 0.31 6.7E-06 33.1 0.5 20 112-132 1-20 (22)
75 KOG0473 Leucine-rich repeat pr 79.7 0.088 1.9E-06 56.6 -6.0 86 186-271 37-124 (326)
76 KOG1947 Leucine rich repeat pr 78.3 0.94 2E-05 52.5 1.2 107 190-296 187-308 (482)
77 PF13504 LRR_7: Leucine rich r 78.1 1.3 2.9E-05 28.4 1.3 14 259-272 2-15 (17)
78 PF13504 LRR_7: Leucine rich r 77.2 1.5 3.2E-05 28.1 1.3 12 215-226 3-14 (17)
79 KOG3763 mRNA export factor TAP 74.8 2.2 4.8E-05 51.1 2.9 76 255-333 215-293 (585)
80 KOG4341 F-box protein containi 74.4 0.5 1.1E-05 54.7 -2.4 118 211-328 292-419 (483)
81 TIGR00864 PCC polycystin catio 70.0 3.9 8.4E-05 57.1 3.9 38 264-302 1-38 (2740)
82 KOG3864 Uncharacterized conser 68.1 0.76 1.7E-05 48.7 -2.5 74 192-265 102-183 (221)
83 PF13516 LRR_6: Leucine Rich r 67.7 2.2 4.7E-05 29.3 0.5 22 110-131 1-22 (24)
84 smart00369 LRR_TYP Leucine-ric 65.9 5.3 0.00011 27.8 2.2 19 257-275 1-19 (26)
85 smart00370 LRR Leucine-rich re 65.9 5.3 0.00011 27.8 2.2 19 257-275 1-19 (26)
86 smart00369 LRR_TYP Leucine-ric 64.4 5.6 0.00012 27.7 2.1 18 213-230 2-19 (26)
87 smart00370 LRR Leucine-rich re 64.4 5.6 0.00012 27.7 2.1 18 213-230 2-19 (26)
88 smart00365 LRR_SD22 Leucine-ri 53.4 12 0.00025 27.0 2.1 15 192-206 3-17 (26)
89 smart00365 LRR_SD22 Leucine-ri 52.9 9.8 0.00021 27.3 1.7 17 258-274 2-18 (26)
90 PHA02858 EIF2a-like PKR inhibi 49.8 28 0.0006 32.1 4.5 70 827-901 6-79 (86)
91 KOG3864 Uncharacterized conser 46.8 17 0.00036 38.9 3.0 82 62-143 100-184 (221)
92 PF15410 PH_9: Pleckstrin homo 41.2 26 0.00057 33.8 3.3 30 893-922 86-115 (119)
93 smart00364 LRR_BAC Leucine-ric 40.1 18 0.00038 26.2 1.4 18 258-275 2-19 (26)
94 smart00368 LRR_RI Leucine rich 35.8 28 0.00061 25.0 1.9 18 111-128 2-19 (28)
95 KOG4242 Predicted myosin-I-bin 21.6 3.5E+02 0.0075 32.8 8.3 23 85-107 163-185 (553)
No 1
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=100.00 E-value=2.9e-93 Score=812.15 Aligned_cols=878 Identities=43% Similarity=0.629 Sum_probs=744.8
Q ss_pred chhhHHHHHHHHHHhccCchhcCCcEEEec-CCCccchHhhhhhcccchhccCCCCCcccccccccCCCCCcchHHHHHh
Q 002315 5 TGDRYLEKLVKFVEQQAGPLIEGSIVLKLN-PAGLHYVQSRLEALRELERLLAGAPLDYLRAYVSDLGDHRALEQLRRIL 83 (937)
Q Consensus 5 ~G~~yl~~~v~~L~~~~~~lL~~l~~L~L~-~~~L~~Lp~~L~~L~~Le~L~~g~~L~~L~l~vLdLs~n~~le~Lp~~L 83 (937)
+|++|++.+.+||+..++.++.++.+|+|+ +..++....++..+.+|+....+++.+++++.+-+.++...+.++..++
T Consensus 1 ~~d~~l~kLa~lLre~gD~lLsg~~tL~L~~p~l~~lnh~~l~s~~EL~lg~~g~~~~~f~a~~s~~ads~vl~qLq~i~ 80 (1096)
T KOG1859|consen 1 TGDRYLEKLANLLRENGDKLLSGTFTLKLNGPALLHLNHLRLISLRELELGLSGAPVDYFRAYVSDNADSRVLEQLQRIL 80 (1096)
T ss_pred CccHHHHHHHHHHHhcccceecceeEEEeccHHHHHHHHHHHHhhHHHhhccCCCCCceeEEecCCcccchHHHHHHHHH
Confidence 689999999999999999999999999999 5555666667888888988888999999999999999999999999888
Q ss_pred cCCCCCcEEEccCCCCCCCC-CCCCCCCCCCcEEEeeCCCCCccchhhHhhhhhhhhhhhccCCCcccchhcccchhccc
Q 002315 84 KLLTSLKVVSALPPPARDPT-PLSLLPFCRLKVLELRGCDLSTSAAKGLLELRHTLEKIICHNSTNALRHVFASRIVEIK 162 (937)
Q Consensus 84 ~~L~~Lk~LdLs~N~Is~~i-P~sLs~L~~L~~LdLS~N~Ls~~lp~~L~~L~~Ll~LlL~~N~L~~L~~l~~~~i~~l~ 162 (937)
.-+++++.|.+-.-.-.+.. |-.|..+..|+.|.|.++.|.. ..++..+.+.++.++|+|.+..+++++..++.++.
T Consensus 81 d~lqkt~~lkl~~~pa~~pt~pi~ifpF~sLr~LElrg~~L~~--~~GL~~lr~qLe~LIC~~Sl~Al~~v~ascggd~~ 158 (1096)
T KOG1859|consen 81 DFLQKTKVLKLLPSPARDPTEPISIFPFRSLRVLELRGCDLST--AKGLQELRHQLEKLICHNSLDALRHVFASCGGDIS 158 (1096)
T ss_pred HHHhhheeeeecccCCCCCCCCceeccccceeeEEecCcchhh--hhhhHHHHHhhhhhhhhccHHHHHHHHHHhccccc
Confidence 88888888888766655544 7788999999999999999986 77899999999999999999999999999999999
Q ss_pred CCCCCCCccEEEccCCcCccchhhcCCCCCCcEEECCCCCCCCCcCcCCCCCCCEEECCCCCCCCcccccccccccceec
Q 002315 163 DSPQWNRLSFVSCSCNRLVIMDESLQLLPAVETLDLSRNKFAKVDNLRKCVNLKHLDLGFNNLRSIAAFSEVSCHIVKLV 242 (937)
Q Consensus 163 ~l~~l~~L~~L~Ls~N~Ls~LP~sL~~L~~L~~LdLs~N~L~~l~~L~~L~~L~~LdLS~N~Lt~L~~l~~~l~sL~~L~ 242 (937)
+.+.|..|...++++|.+..+..++.-++.|+.|+|++|+++.++.+..|+.|++|||++|.++.+|.+...-..|+.|.
T Consensus 159 ns~~Wn~L~~a~fsyN~L~~mD~SLqll~ale~LnLshNk~~~v~~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~L~~L~ 238 (1096)
T KOG1859|consen 159 NSPVWNKLATASFSYNRLVLMDESLQLLPALESLNLSHNKFTKVDNLRRLPKLKHLDLSYNCLRHVPQLSMVGCKLQLLN 238 (1096)
T ss_pred cchhhhhHhhhhcchhhHHhHHHHHHHHHHhhhhccchhhhhhhHHHHhcccccccccccchhccccccchhhhhheeee
Confidence 99999999999999999999999999999999999999999999999999999999999999999998766545699999
Q ss_pred ccCccccccccCCCCCCCCEEEccCCCCCCCchhhhhcCCCCCCEEEecCCCCCCCcchhhhHhhhcC---CCceeccCC
Q 002315 243 LRNNALTTLRGIENLKSLEGLDISYNIISTFSELEFLASLPYLLNLWLEGNPLCCSRWYRAQVFSYFA---HPAKLKVDG 319 (937)
Q Consensus 243 Ls~N~Lt~Lp~L~~L~sL~~LdLS~N~Ls~l~~l~~L~~L~sL~~L~Ls~NpLt~~~~~r~~~~~~l~---~L~~L~Ldg 319 (937)
|++|.++.+.++.+|.+|+.|||++|-|.+...+..++.|..|+.|+|.|||++|.+|+|.....++. ....+.|||
T Consensus 239 lrnN~l~tL~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~c~p~hRaataqYl~~~~a~~~f~LDg 318 (1096)
T KOG1859|consen 239 LRNNALTTLRGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLCCAPWHRAATAQYLHKNSAPVKFKLDG 318 (1096)
T ss_pred ecccHHHhhhhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccccCHHHHHHHHhHhccccCCcceEecc
Confidence 99999999999999999999999999999988888888999999999999999999999999988887 788899999
Q ss_pred ccCChhhHHHHHHHHHhhcCCCCCccccCCCCCCCCCCCchhhhhhhhhhhccccccccccccc--CCCCCCcCCccccc
Q 002315 320 KEISTRELWERQLIIARRQKRPAGFGFYSPAKGNADGDGNANRKRKKACRLASIESEEESTCVG--SDRESVSCDNEIES 397 (937)
Q Consensus 320 N~Is~~e~~~~~~l~~~~~~~p~~~~~~~p~~~~~~~~~~~~~~lkki~rl~~i~~ee~s~c~~--sdqes~~~~~~s~s 397 (937)
..++..+.++.+.....+...|..|.+|+|+......+.++.+...++.+++.+..++++..+. ++.+...|+.+..+
T Consensus 319 k~l~~~efwk~~s~~~hr~~~p~s~~~~S~a~~~~~~dgS~~~s~gki~tl~~ihs~~~s~~v~r~S~~e~at~DpE~~s 398 (1096)
T KOG1859|consen 319 KALGGREFWKRQSGVSHRSSRPASYGFYSPARSENTSDGSQFRSKGKIYTLASIHSEDESTYVNRISDCESATCDPEESS 398 (1096)
T ss_pred eeccchhhhhhhhheecCCCCCCCCCCCCchhccCCCccchhhhcCceeecccccchhhhheeccccccccccCCccccc
Confidence 9999999999999999999999999999999999999999999999999999999999988887 88888888777554
Q ss_pred c--ccccCCcchHHHHHHHHHHHHhhhccchhhHHHHHhhhcccCCcccccceecCcccccccchhhhhhccCCCccc-c
Q 002315 398 K--EENVASDDDAEIIDLMSRVEHMKRERSILWLREFKEWMDHTSENFVDGSICSGATLMNCEEDNYIKNKRSQPHLA-E 474 (937)
Q Consensus 398 ~--ee~~~sd~e~ei~d~~~~vE~lkke~s~~Wl~ef~eW~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 474 (937)
. ++......+..+.++++++++++++++..|+|+|+|||+.+.+.++++.+.+..|.++.+. |.+....++|++ .
T Consensus 399 ~~~t~a~~f~q~~pe~el~s~~~hl~~~r~vl~lR~~~Ew~~~p~~~~~~~s~~sqpt~seq~~--~tk~rn~p~~e~~g 476 (1096)
T KOG1859|consen 399 EINTEAAKFSQEAPEFELISKVEHLKKERSVLWLREFKEWLDSPNEDFMDVSKTSQPTESEQKY--YTKLRNEPLHEGSG 476 (1096)
T ss_pred cCCCccccccCCCchhhhccchHHHhhhhhHHHHHHHhhhhcCCchhhccccCCCCCcchhcCc--ccccCCCCcccccC
Confidence 4 5566667777789999999999999999999999999999999999999999999999963 444444455554 8
Q ss_pred CcccccccccccCCCCcccccccCCccccCcccccccccccccCccccccCcccCCCccccccccccCCccCCCCCcccc
Q 002315 475 SSKYVSGSVQASGDESSTNILESENSYADMPTGLHAYQSFDHIGSLGITGGFSLPGIGRMELRQENEKPYLHDGAGAATV 554 (937)
Q Consensus 475 ~s~~~~~~~~~~~~~~~~n~~e~~~s~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 554 (937)
+.+|++|+.-..-..+.+|.+|..++|.|+-+|+..+++.....++-+|.....+.-.-.|+||.+ +.+++||....
T Consensus 477 ~p~~tp~sl~~~i~~~p~~n~e~~~~~~~~~~g~~~e~~~e~~et~~et~~e~~~~~~et~ln~~~---~~c~legpp~~ 553 (1096)
T KOG1859|consen 477 TPRYTPGSLHHNISSTPTNNVELASTFDATITGIKSEANDESGETLYETCTEGEETNQETDLNQKH---QLCTLEGPPDR 553 (1096)
T ss_pred CCcCCCCccchhhccCcccchhhcccccccccchhhhcccccccccccccccchhhhhhhhccccc---eeccccCCccc
Confidence 999999999999999999999999999999999999999999999999988888888899999666 89999999988
Q ss_pred c-------ccccccccccccccccccccccCCCccccccccCCCCCCCCCCCCcchhhhhhhhhhhHHHHHhhccce---
Q 002315 555 Q-------SKSFHQDTFTIQDRRMVENIHESPLTPIDDITDAFSSSARPGSPPHYREDILHRRHNLVAEILQLSAES--- 624 (937)
Q Consensus 555 ~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~spp~~~~d~l~rr~~~~~~~lq~~~~~--- 624 (937)
+ +.|-+-.++.+++.+..|||+|+.+. +.++---+.+|+||||||+|+|+||+||++||||++||+
T Consensus 554 ~~~~~~l~vss~~l~e~~l~~a~~dE~~~m~tle----a~q~e~~s~~~sSp~~~~kD~L~~r~~lsl~il~ic~d~~~~ 629 (1096)
T KOG1859|consen 554 HEELLRLYVSSSNLQEDPLSDAESDENGNMSTLE----AKQSETGSLTPSSPPHYQKDVLTRRANLSLEILQICADSRSI 629 (1096)
T ss_pred chhhheeecccccccccchhhhhhhcccceeeee----cccccccccCCCCCCCccccccccchhHHHHHHHhCcccccc
Confidence 8 88888889999999999999999984 444434448999999999999999999999999999999
Q ss_pred -eeeeeCCCCCcCCccCCCCCCC--CcccccccCCcccccCccccccccchhc-------cccC--CC-CC--Cccccc-
Q 002315 625 -YSVVSSDSKTSCSDDDFREYGP--SMLEVDQSINPEHEYSSAEVHSLLNLFE-------EDHN--DQ-PH--EIDCQR- 688 (937)
Q Consensus 625 -~~~~s~~~~~s~s~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~--~~-~~--~~~~~~- 688 (937)
|+|+|+|+.++|++++.++.+. ++.| .....+.+..|++. .--| +| +. .|--.+
T Consensus 630 ~y~v~~~D~~ss~~e~en~ls~~~~~~~e----------q~~~~rdL~~~r~~i~~C~~cgt~F~~eqp~kg~~~kelr~ 699 (1096)
T KOG1859|consen 630 NYSVASSDKQSSCSEVENYLSEELESNLE----------QILLQRDLTENRISIYRCVNCGTQFLIEQPEKGSKIKELRC 699 (1096)
T ss_pred cceeecccccchhhhhhhcccHhhhhhHh----------hhhhhhhhhccccceeeeccccccccccCcccccchhhhcC
Confidence 9999999999999999998877 5655 33334444444431 0001 11 11 122222
Q ss_pred ccc-c--cccccCCCCCCCccccchhhhhHHHhcc--ccccceeeehhhccccchhhhhhhhccCCcccCccccccCCcc
Q 002315 689 ENC-K--NNGFSAGGNDGEVDSSVNQEAHLLEKNK--RKHTRRVISLLKEQNTVAKTEALQNLNGNLNISEADNVGEQGK 763 (937)
Q Consensus 689 ~~~-~--~~~f~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 763 (937)
++| | +++|.+|.|.-+-.++|||+.+|..|+- |||++|.+..+++..-+ -++|--|+- .+.+|..+
T Consensus 700 pd~~k~~t~~v~~~~~s~~~~~~v~a~~rl~p~~~~~rkp~e~~~ap~~~es~~----ci~kg~~sh-l~~ad~s~---- 770 (1096)
T KOG1859|consen 700 PDSRKVYTTNVTSGLHSLKPSGGVNAEPRLSPKMIVERKPVERLVAPINEESSN----CIGKGEASH-LSDADISD---- 770 (1096)
T ss_pred cchhhcccccccccccccCCccceecccccCcchhhhccchhhhcccccccccc----ccCccchhh-hhhcccCC----
Confidence 333 4 7899999999777789999999999988 99999999988876510 011111221 22222222
Q ss_pred eeeeccccccccchhc-ccccc-ccccccc--cccccccccccch-----hhh-HHHhhhccccCCchhHhhccceEE-E
Q 002315 764 HIFGLNYLLRTSDKKQ-TRENA-VMTPYIS--GIGSVAKFLSSVK-----EDF-VEDYFNKNVADSKSHETCMQYTVC-W 832 (937)
Q Consensus 764 ~~~~~~~~~~~~~~~~-~~~~~-~~~~~~~--~~~~~~~~~~~~~-----~~~-~~~~f~~~~~~~~~~e~~~~~~~~-~ 832 (937)
.+-..++.++ ..+|. -...|-. -..|...|.+|+. ..| ++.||-+..|+++..|+|+.||.| +
T Consensus 771 ------~~e~~~~rDh~fw~ns~lp~~c~~~~~~~rs~~FLe~E~~~~~~e~~q~~~~~paklav~S~~~~c~~~vS~~~ 844 (1096)
T KOG1859|consen 771 ------SDEDNTIRDHEFWENSSLPHLCTSHDEVARSKSFLETEFGLLLAEQAQVEELFPAKLAVSSHVETCRSYVSCDV 844 (1096)
T ss_pred ------ccccccccccchhccCCCCcccccchhhHHHHHHHHHHhhhhhhhhcccccccchhhccCCCCceeEEEecccc
Confidence 1111122222 12222 1111111 0111223444433 344 899999999999999999999999 9
Q ss_pred EEecCCccccee-------EEEEeecCCeeEEEEEeeeecCCcccccccccccchhhHHHhhhccceEEEEE--------
Q 002315 833 ILEQDFMHRGRE-------VAVLRSSENKFYVLLFGVTVDGTGSILNLLGCHKIEDIREVLIGLGLQVLRVS-------- 897 (937)
Q Consensus 833 ~~~~~~~~~~~e-------~~~l~~s~~k~~~ll~~~~~~~~~~~~~~l~~~~~~~~~~v~~g~glq~~r~~-------- 897 (937)
|+|.+++|+||| ++||++||||+||+|++|+.|-+++.++++|.|-+.|+|.|.||||+|++++.
T Consensus 845 i~~~~sTyeqre~~a~~lq~~Ll~~sqd~l~~gl~g~S~~le~sa~s~~c~~~~~d~q~~~~~l~~~~~~Les~~~~~~~ 924 (1096)
T KOG1859|consen 845 ILQICSTYEQRETDAPQLQNVLLLSSQDKLYVGLVGVSTDLEKSALSALCSHFISDFQDVSVGLGLQKVLLESEATVFQP 924 (1096)
T ss_pred hhhhhchhhhcCCCchhhhheeecccccceeeeeccccchhhhhhcccccccchhhhhhhhhHHHHHHHHHhccchhhhc
Confidence 999999999999 99999999999999999999999999999999999999999999999998765
Q ss_pred ----------eecCcEEEEEeccHHHHHHHh
Q 002315 898 ----------TEMGATYLLMTRSIEKSRQLF 918 (937)
Q Consensus 898 ----------~~~~~~~~~~t~~~~~~~~~~ 918 (937)
+-..-.|+|.+|+++|+++++
T Consensus 925 ~~~~~~~~~~i~hrl~~~f~~~~fkE~~e~f 955 (1096)
T KOG1859|consen 925 YKFNYSDFNDIDHRLKLYFYQRKFKEDGELF 955 (1096)
T ss_pred cccccccccchhhhhhhhhhhhhhhhhhHHH
Confidence 345567899999999999996
No 2
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.86 E-value=1.9e-23 Score=237.21 Aligned_cols=269 Identities=22% Similarity=0.277 Sum_probs=189.3
Q ss_pred hcCCcEEEecCCCccchHhhhhhcccchhccCCCCCcccccccccCCCCCcchHHHHHhcCCCCCcEEEccCCCCC-CCC
Q 002315 25 IEGSIVLKLNPAGLHYVQSRLEALRELERLLAGAPLDYLRAYVSDLGDHRALEQLRRILKLLTSLKVVSALPPPAR-DPT 103 (937)
Q Consensus 25 L~~l~~L~L~~~~L~~Lp~~L~~L~~Le~L~~g~~L~~L~l~vLdLs~n~~le~Lp~~L~~L~~Lk~LdLs~N~Is-~~i 103 (937)
+...+||+|+.+.|..+|+.|+.|++|++|.. ++| .+..+...++.||.|+.+.+.+|++. .-+
T Consensus 31 Mt~~~WLkLnrt~L~~vPeEL~~lqkLEHLs~--------------~HN-~L~~vhGELs~Lp~LRsv~~R~N~LKnsGi 95 (1255)
T KOG0444|consen 31 MTQMTWLKLNRTKLEQVPEELSRLQKLEHLSM--------------AHN-QLISVHGELSDLPRLRSVIVRDNNLKNSGI 95 (1255)
T ss_pred hhheeEEEechhhhhhChHHHHHHhhhhhhhh--------------hhh-hhHhhhhhhccchhhHHHhhhccccccCCC
Confidence 56678999999999999999999999998864 233 35556667788888888888888873 346
Q ss_pred CCCCCCCCCCcEEEeeCCCCCccchhhHhhhhhhhhhhhccCCCcccchhcccchhcccCCCCCCCccEEEccCCcCccc
Q 002315 104 PLSLLPFCRLKVLELRGCDLSTSAAKGLLELRHTLEKIICHNSTNALRHVFASRIVEIKDSPQWNRLSFVSCSCNRLVIM 183 (937)
Q Consensus 104 P~sLs~L~~L~~LdLS~N~Ls~~lp~~L~~L~~Ll~LlL~~N~L~~L~~l~~~~i~~l~~l~~l~~L~~L~Ls~N~Ls~L 183 (937)
|..+..|..|+.||||+|++.. .|..+...++++.|.+++|+|.+++.-.+- +++.|-+|+|++|++..+
T Consensus 96 P~diF~l~dLt~lDLShNqL~E-vP~~LE~AKn~iVLNLS~N~IetIPn~lfi---------nLtDLLfLDLS~NrLe~L 165 (1255)
T KOG0444|consen 96 PTDIFRLKDLTILDLSHNQLRE-VPTNLEYAKNSIVLNLSYNNIETIPNSLFI---------NLTDLLFLDLSNNRLEML 165 (1255)
T ss_pred Cchhcccccceeeecchhhhhh-cchhhhhhcCcEEEEcccCccccCCchHHH---------hhHhHhhhccccchhhhc
Confidence 7778888888889999988865 788888888888888888888888876544 345677888888888888
Q ss_pred hhhcCCCCCCcEEECCCCCCCCC--cC-------------------------cCCCCCCCEEECCCCCCCCccccccccc
Q 002315 184 DESLQLLPAVETLDLSRNKFAKV--DN-------------------------LRKCVNLKHLDLGFNNLRSIAAFSEVSC 236 (937)
Q Consensus 184 P~sL~~L~~L~~LdLs~N~L~~l--~~-------------------------L~~L~~L~~LdLS~N~Lt~L~~l~~~l~ 236 (937)
|+.+..+.+|++|.|++|.+... .. +..+.+|..++||.|.+..+|.....++
T Consensus 166 PPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp~vPecly~l~ 245 (1255)
T KOG0444|consen 166 PPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLPIVPECLYKLR 245 (1255)
T ss_pred CHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCCcchHHHhhhh
Confidence 88888888888888888876532 12 3344555566666666666665555556
Q ss_pred ccceecccCccccccc-cCCCCCCCCEEEccCCCCCCCchhhhhcCCCCCCEEEecCCCCCCCcchhhhHhhhcCCCcee
Q 002315 237 HIVKLVLRNNALTTLR-GIENLKSLEGLDISYNIISTFSELEFLASLPYLLNLWLEGNPLCCSRWYRAQVFSYFAHPAKL 315 (937)
Q Consensus 237 sL~~L~Ls~N~Lt~Lp-~L~~L~sL~~LdLS~N~Ls~l~~l~~L~~L~sL~~L~Ls~NpLt~~~~~r~~~~~~l~~L~~L 315 (937)
+|+.|+|++|+|+.+. ......+|++|+||+|+++.+| ..+.++++|+.|.+.+|.++-.. + +..+..+..|.++
T Consensus 246 ~LrrLNLS~N~iteL~~~~~~W~~lEtLNlSrNQLt~LP--~avcKL~kL~kLy~n~NkL~FeG-i-PSGIGKL~~Levf 321 (1255)
T KOG0444|consen 246 NLRRLNLSGNKITELNMTEGEWENLETLNLSRNQLTVLP--DAVCKLTKLTKLYANNNKLTFEG-I-PSGIGKLIQLEVF 321 (1255)
T ss_pred hhheeccCcCceeeeeccHHHHhhhhhhccccchhccch--HHHhhhHHHHHHHhccCcccccC-C-ccchhhhhhhHHH
Confidence 6666666666666654 4444556666666666666665 45566666666666666664321 1 1334455556666
Q ss_pred ccCCccC
Q 002315 316 KVDGKEI 322 (937)
Q Consensus 316 ~LdgN~I 322 (937)
...+|.+
T Consensus 322 ~aanN~L 328 (1255)
T KOG0444|consen 322 HAANNKL 328 (1255)
T ss_pred Hhhcccc
Confidence 6666654
No 3
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.85 E-value=1.2e-22 Score=230.49 Aligned_cols=255 Identities=20% Similarity=0.214 Sum_probs=199.0
Q ss_pred ccccCCCCCcchHHH-HHhcCCCCCcEEEccCCCCCCCCCCCCCCCCCCcEEEeeCCCCCccchhhHhhhhhhhhhhhcc
Q 002315 66 YVSDLGDHRALEQLR-RILKLLTSLKVVSALPPPARDPTPLSLLPFCRLKVLELRGCDLSTSAAKGLLELRHTLEKIICH 144 (937)
Q Consensus 66 ~vLdLs~n~~le~Lp-~~L~~L~~Lk~LdLs~N~Is~~iP~sLs~L~~L~~LdLS~N~Ls~~lp~~L~~L~~Ll~LlL~~ 144 (937)
..+||+.|... .+| ..|..-.++++|+|++|.|+.+-...|..|.+|..|.|+.|+|+...+..|..|++|..|.+..
T Consensus 152 rslDLSrN~is-~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnr 230 (873)
T KOG4194|consen 152 RSLDLSRNLIS-EIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNR 230 (873)
T ss_pred hhhhhhhchhh-cccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCcccccCHHHhhhcchhhhhhccc
Confidence 46788876543 344 3566667899999999999988889999999999999999999998888888899999999999
Q ss_pred CCCcccchhcccchhcccC---------------CCCCCCccEEEccCCcCccchh-hcCCCCCCcEEECCCCCCCCC--
Q 002315 145 NSTNALRHVFASRIVEIKD---------------SPQWNRLSFVSCSCNRLVIMDE-SLQLLPAVETLDLSRNKFAKV-- 206 (937)
Q Consensus 145 N~L~~L~~l~~~~i~~l~~---------------l~~l~~L~~L~Ls~N~Ls~LP~-sL~~L~~L~~LdLs~N~L~~l-- 206 (937)
|.+..++.+.+..+..+.. +-.+.++++|+|..|++..+.. ++.+|+.|+.|+|++|.|..+
T Consensus 231 N~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~ 310 (873)
T KOG4194|consen 231 NRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHI 310 (873)
T ss_pred cceeeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhcccccccchhhhhccchhhhheeec
Confidence 9887777766655544332 2356788888888888887755 678888889999999988876
Q ss_pred cCcCCCCCCCEEECCCCCCCCcccc-cccccccceecccCccccccc--cCCCCCCCCEEEccCCCCCCCc--hhhhhcC
Q 002315 207 DNLRKCVNLKHLDLGFNNLRSIAAF-SEVSCHIVKLVLRNNALTTLR--GIENLKSLEGLDISYNIISTFS--ELEFLAS 281 (937)
Q Consensus 207 ~~L~~L~~L~~LdLS~N~Lt~L~~l-~~~l~sL~~L~Ls~N~Lt~Lp--~L~~L~sL~~LdLS~N~Ls~l~--~l~~L~~ 281 (937)
+.+...++|+.|+|++|+|+.+++. +..+..|+.|+|++|+|..+. .|..+.+|+.|||++|.|+-.. ....+..
T Consensus 311 d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~g 390 (873)
T KOG4194|consen 311 DSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNG 390 (873)
T ss_pred chhhhcccceeEeccccccccCChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhcc
Confidence 4677778899999999999888763 345678888888888888874 6778888888888888876321 1134677
Q ss_pred CCCCCEEEecCCCCCCCcchhhhHhhhcCCCceeccCCccCCh
Q 002315 282 LPYLLNLWLEGNPLCCSRWYRAQVFSYFAHPAKLKVDGKEIST 324 (937)
Q Consensus 282 L~sL~~L~Ls~NpLt~~~~~r~~~~~~l~~L~~L~LdgN~Is~ 324 (937)
|++|+.|.|.||++...+ .+.|..++.|+.|+|.+|+|..
T Consensus 391 l~~LrkL~l~gNqlk~I~---krAfsgl~~LE~LdL~~NaiaS 430 (873)
T KOG4194|consen 391 LPSLRKLRLTGNQLKSIP---KRAFSGLEALEHLDLGDNAIAS 430 (873)
T ss_pred chhhhheeecCceeeecc---hhhhccCcccceecCCCCccee
Confidence 888888888888886444 5678888888888888888753
No 4
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.83 E-value=2.3e-20 Score=235.32 Aligned_cols=242 Identities=21% Similarity=0.193 Sum_probs=116.2
Q ss_pred cccCCCCCcchHHHHHhcCCCCCcEEEccCCCCCCCCCCCCCCCCCCcEEEeeCCCCCccchhhHhhhhhhhhhhhccCC
Q 002315 67 VSDLGDHRALEQLRRILKLLTSLKVVSALPPPARDPTPLSLLPFCRLKVLELRGCDLSTSAAKGLLELRHTLEKIICHNS 146 (937)
Q Consensus 67 vLdLs~n~~le~Lp~~L~~L~~Lk~LdLs~N~Is~~iP~sLs~L~~L~~LdLS~N~Ls~~lp~~L~~L~~Ll~LlL~~N~ 146 (937)
.+++++|+..+.+|. ..+++|++|+|++|.+.+.+|..|+.+++|++|+|++|.+.+.+|..+.++++|..+.+.+|.
T Consensus 122 ~L~Ls~n~l~~~~p~--~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~ 199 (968)
T PLN00113 122 YLNLSNNNFTGSIPR--GSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQ 199 (968)
T ss_pred EEECcCCccccccCc--cccCCCCEEECcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCC
Confidence 445555544444442 345555555555555555555555555555555555555555555555555555555555554
Q ss_pred CcccchhcccchhcccCCCCCCCccEEEccCCcCc-cchhhcCCCCCCcEEECCCCCCCC-Cc-CcCCCCCCCEEECCCC
Q 002315 147 TNALRHVFASRIVEIKDSPQWNRLSFVSCSCNRLV-IMDESLQLLPAVETLDLSRNKFAK-VD-NLRKCVNLKHLDLGFN 223 (937)
Q Consensus 147 L~~L~~l~~~~i~~l~~l~~l~~L~~L~Ls~N~Ls-~LP~sL~~L~~L~~LdLs~N~L~~-l~-~L~~L~~L~~LdLS~N 223 (937)
+... .+. .+..+++|+.|++++|.+. .+|..+..+++|++|+|++|.+.+ ++ .+..+++|+.|+|++|
T Consensus 200 l~~~---~p~------~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n 270 (968)
T PLN00113 200 LVGQ---IPR------ELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQN 270 (968)
T ss_pred CcCc---CCh------HHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCC
Confidence 3211 000 0123345555555555554 444455555555555555555443 12 4445555555555555
Q ss_pred CCCC-cccccccccccceecccCccccc-cc-cCCCCCCCCEEEccCCCCCCCchhhhhcCCCCCCEEEecCCCCCCCcc
Q 002315 224 NLRS-IAAFSEVSCHIVKLVLRNNALTT-LR-GIENLKSLEGLDISYNIISTFSELEFLASLPYLLNLWLEGNPLCCSRW 300 (937)
Q Consensus 224 ~Lt~-L~~l~~~l~sL~~L~Ls~N~Lt~-Lp-~L~~L~sL~~LdLS~N~Ls~l~~l~~L~~L~sL~~L~Ls~NpLt~~~~ 300 (937)
.+.+ +|.....+++|+.|+|++|.+.. +| .+..+++|+.|+|++|.+....+ ..+..+++|+.|+|++|.+....
T Consensus 271 ~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~-~~~~~l~~L~~L~L~~n~l~~~~- 348 (968)
T PLN00113 271 KLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIP-VALTSLPRLQVLQLWSNKFSGEI- 348 (968)
T ss_pred eeeccCchhHhhccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccCCcCC-hhHhcCCCCCEEECcCCCCcCcC-
Confidence 5443 23333334455555555555443 22 34445555555555555543221 33444555555555555544221
Q ss_pred hhhhHhhhcCCCceeccCCccCC
Q 002315 301 YRAQVFSYFAHPAKLKVDGKEIS 323 (937)
Q Consensus 301 ~r~~~~~~l~~L~~L~LdgN~Is 323 (937)
+..+..++.|+.++|++|.+.
T Consensus 349 --p~~l~~~~~L~~L~Ls~n~l~ 369 (968)
T PLN00113 349 --PKNLGKHNNLTVLDLSTNNLT 369 (968)
T ss_pred --ChHHhCCCCCcEEECCCCeeE
Confidence 122334444555555555443
No 5
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.83 E-value=1.1e-21 Score=222.91 Aligned_cols=286 Identities=21% Similarity=0.211 Sum_probs=164.6
Q ss_pred hcCCcEEEecCCCccch-HhhhhhcccchhccCCCC-Cccc--------ccccccCCCCCcchHHHHHhcCCCCCcEEEc
Q 002315 25 IEGSIVLKLNPAGLHYV-QSRLEALRELERLLAGAP-LDYL--------RAYVSDLGDHRALEQLRRILKLLTSLKVVSA 94 (937)
Q Consensus 25 L~~l~~L~L~~~~L~~L-p~~L~~L~~Le~L~~g~~-L~~L--------~l~vLdLs~n~~le~Lp~~L~~L~~Lk~LdL 94 (937)
..-.++|++..+.|..+ +..+.+|++|..+..... ++.+ .+..++|.+|..-..-...++.++.|+.|||
T Consensus 77 p~~t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt~IP~f~~~sghl~~L~L~~N~I~sv~se~L~~l~alrslDL 156 (873)
T KOG4194|consen 77 PSQTQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELTRIPRFGHESGHLEKLDLRHNLISSVTSEELSALPALRSLDL 156 (873)
T ss_pred ccceeeeeccccccccCcHHHHhcCCcceeeeeccchhhhcccccccccceeEEeeeccccccccHHHHHhHhhhhhhhh
Confidence 33445677777777665 333455555544332110 0000 0123344444332222345556666666666
Q ss_pred cCCCCCCCCCCCCCCCCCCcEEEeeCCCCCccchhhHhhhhhhhhhhhccCCCcccchhcccchhcccCCCCCCCccEEE
Q 002315 95 LPPPARDPTPLSLLPFCRLKVLELRGCDLSTSAAKGLLELRHTLEKIICHNSTNALRHVFASRIVEIKDSPQWNRLSFVS 174 (937)
Q Consensus 95 s~N~Is~~iP~sLs~L~~L~~LdLS~N~Ls~~lp~~L~~L~~Ll~LlL~~N~L~~L~~l~~~~i~~l~~l~~l~~L~~L~ 174 (937)
+.|.|+.+.-.+|..-.+|++|+|++|.|+..-...|..+.+|+.+-++.|.++.++...+. ++++|+.|+
T Consensus 157 SrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk---------~L~~L~~Ld 227 (873)
T KOG4194|consen 157 SRNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFK---------RLPKLESLD 227 (873)
T ss_pred hhchhhcccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCcccccCHHHhh---------hcchhhhhh
Confidence 66666655555565556666777777766666666666666666666666666666654433 345566666
Q ss_pred ccCCcCccc-hhhcCCCCCCcEEECCCCCCCCCc--CcCCCCCCCEEECCCCCCCCccc-ccccccccceecccCccccc
Q 002315 175 CSCNRLVIM-DESLQLLPAVETLDLSRNKFAKVD--NLRKCVNLKHLDLGFNNLRSIAA-FSEVSCHIVKLVLRNNALTT 250 (937)
Q Consensus 175 Ls~N~Ls~L-P~sL~~L~~L~~LdLs~N~L~~l~--~L~~L~~L~~LdLS~N~Lt~L~~-l~~~l~sL~~L~Ls~N~Lt~ 250 (937)
|..|+|..+ --.|.+|++|+.|.|.+|.|..+. .|..+.++++|+|..|+++.+.. +...+..|+.|+|+.|.|..
T Consensus 228 LnrN~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~r 307 (873)
T KOG4194|consen 228 LNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQR 307 (873)
T ss_pred ccccceeeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhcccccccchhhhhccchhhhhe
Confidence 666666544 225566666666666666666653 45566666666666666665542 44455666666666666666
Q ss_pred c--ccCCCCCCCCEEEccCCCCCCCchhhhhcCCCCCCEEEecCCCCCCCcchhhhHhhhcCCCceeccCCccCC
Q 002315 251 L--RGIENLKSLEGLDISYNIISTFSELEFLASLPYLLNLWLEGNPLCCSRWYRAQVFSYFAHPAKLKVDGKEIS 323 (937)
Q Consensus 251 L--p~L~~L~sL~~LdLS~N~Ls~l~~l~~L~~L~sL~~L~Ls~NpLt~~~~~r~~~~~~l~~L~~L~LdgN~Is 323 (937)
+ ..+..+++|+.|+|++|+|+.+++ ..+..|..|+.|+|++|.+.. +....|..+.+|+.|+|+.|.++
T Consensus 308 ih~d~WsftqkL~~LdLs~N~i~~l~~-~sf~~L~~Le~LnLs~Nsi~~---l~e~af~~lssL~~LdLr~N~ls 378 (873)
T KOG4194|consen 308 IHIDSWSFTQKLKELDLSSNRITRLDE-GSFRVLSQLEELNLSHNSIDH---LAEGAFVGLSSLHKLDLRSNELS 378 (873)
T ss_pred eecchhhhcccceeEeccccccccCCh-hHHHHHHHhhhhcccccchHH---HHhhHHHHhhhhhhhcCcCCeEE
Confidence 4 255666666666666666666654 455566666666666666642 22344556666666666666654
No 6
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.83 E-value=3.2e-20 Score=233.93 Aligned_cols=253 Identities=20% Similarity=0.155 Sum_probs=117.3
Q ss_pred cccCCCCCcchHHHHHhcCCCCCcEEEccCCCCCCCCCCCCCCCCCCcEEEeeCCCCCccchhhHhhhhhhhhhhhccCC
Q 002315 67 VSDLGDHRALEQLRRILKLLTSLKVVSALPPPARDPTPLSLLPFCRLKVLELRGCDLSTSAAKGLLELRHTLEKIICHNS 146 (937)
Q Consensus 67 vLdLs~n~~le~Lp~~L~~L~~Lk~LdLs~N~Is~~iP~sLs~L~~L~~LdLS~N~Ls~~lp~~L~~L~~Ll~LlL~~N~ 146 (937)
.+++++|...+.+|..+.++++|++|+|++|.+.+.+|..|+.+++|+.|+|++|.+++.+|..+..+++|..+.+.+|.
T Consensus 168 ~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~ 247 (968)
T PLN00113 168 VLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNN 247 (968)
T ss_pred EEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCce
Confidence 45555555555566666666666666666666666666666666666666666666666566666666666666666554
Q ss_pred Ccc-cchhccc------------chh-cc-cCCCCCCCccEEEccCCcCc-cchhhcCCCCCCcEEECCCCCCCCC--cC
Q 002315 147 TNA-LRHVFAS------------RIV-EI-KDSPQWNRLSFVSCSCNRLV-IMDESLQLLPAVETLDLSRNKFAKV--DN 208 (937)
Q Consensus 147 L~~-L~~l~~~------------~i~-~l-~~l~~l~~L~~L~Ls~N~Ls-~LP~sL~~L~~L~~LdLs~N~L~~l--~~ 208 (937)
+.. ++..+.. .+. .+ ..+..+++|+.|++++|.+. .+|..+..+++|+.|++++|.+... ..
T Consensus 248 l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~ 327 (968)
T PLN00113 248 LTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVA 327 (968)
T ss_pred eccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccCCcCChh
Confidence 321 1111000 000 00 00112334444444444443 3344444444444444444444331 13
Q ss_pred cCCCCCCCEEECCCCCCCC-cccccccccccceecccCccccc-cc-cCCCCCCCCEEEccCCCCCCCchhhhhcCCCCC
Q 002315 209 LRKCVNLKHLDLGFNNLRS-IAAFSEVSCHIVKLVLRNNALTT-LR-GIENLKSLEGLDISYNIISTFSELEFLASLPYL 285 (937)
Q Consensus 209 L~~L~~L~~LdLS~N~Lt~-L~~l~~~l~sL~~L~Ls~N~Lt~-Lp-~L~~L~sL~~LdLS~N~Ls~l~~l~~L~~L~sL 285 (937)
+..+++|+.|+|++|.+.+ +|.....+++|+.|+|++|.++. +| .+..+++|+.|++++|.+....+ ..+..+++|
T Consensus 328 ~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p-~~~~~~~~L 406 (968)
T PLN00113 328 LTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIP-KSLGACRSL 406 (968)
T ss_pred HhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEecccCC-HHHhCCCCC
Confidence 4444444444444444442 22223333444444444444433 22 33334444444444444443221 334444555
Q ss_pred CEEEecCCCCCCCcchhhhHhhhcCCCceeccCCccCC
Q 002315 286 LNLWLEGNPLCCSRWYRAQVFSYFAHPAKLKVDGKEIS 323 (937)
Q Consensus 286 ~~L~Ls~NpLt~~~~~r~~~~~~l~~L~~L~LdgN~Is 323 (937)
+.|+|++|+++... +..+..++.|+.++|.+|.++
T Consensus 407 ~~L~L~~n~l~~~~---p~~~~~l~~L~~L~Ls~N~l~ 441 (968)
T PLN00113 407 RRVRLQDNSFSGEL---PSEFTKLPLVYFLDISNNNLQ 441 (968)
T ss_pred CEEECcCCEeeeEC---ChhHhcCCCCCEEECcCCccc
Confidence 55555555544221 122334444555555555443
No 7
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.81 E-value=2.1e-21 Score=220.81 Aligned_cols=289 Identities=22% Similarity=0.216 Sum_probs=218.0
Q ss_pred hcCCcEEEecCCCccchHhhhhhcccchhccC--------CCCCc---ccccccccCCCCCcchHHHHHhcCCCCCcEEE
Q 002315 25 IEGSIVLKLNPAGLHYVQSRLEALRELERLLA--------GAPLD---YLRAYVSDLGDHRALEQLRRILKLLTSLKVVS 93 (937)
Q Consensus 25 L~~l~~L~L~~~~L~~Lp~~L~~L~~Le~L~~--------g~~L~---~L~l~vLdLs~n~~le~Lp~~L~~L~~Lk~Ld 93 (937)
+.++..|.+..+.|..+.-.|+.|+.|+.+.. |.+-+ .-++.++||++|+ +.+.|..+..-+++-.|+
T Consensus 54 lqkLEHLs~~HN~L~~vhGELs~Lp~LRsv~~R~N~LKnsGiP~diF~l~dLt~lDLShNq-L~EvP~~LE~AKn~iVLN 132 (1255)
T KOG0444|consen 54 LQKLEHLSMAHNQLISVHGELSDLPRLRSVIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQ-LREVPTNLEYAKNSIVLN 132 (1255)
T ss_pred HhhhhhhhhhhhhhHhhhhhhccchhhHHHhhhccccccCCCCchhcccccceeeecchhh-hhhcchhhhhhcCcEEEE
Confidence 34566777777888777777777776665432 22222 2345678888775 666888888889999999
Q ss_pred ccCCCCCCCCCCCCCCCCCCcEEEeeCCCCCccchhhHhhhhhhhhhhhccCCCcc-----cchhccc----------ch
Q 002315 94 ALPPPARDPTPLSLLPFCRLKVLELRGCDLSTSAAKGLLELRHTLEKIICHNSTNA-----LRHVFAS----------RI 158 (937)
Q Consensus 94 Ls~N~Is~~iP~sLs~L~~L~~LdLS~N~Ls~~lp~~L~~L~~Ll~LlL~~N~L~~-----L~~l~~~----------~i 158 (937)
|++|+|..+...-|.+|+.|-+||||+|++.. +|+.+..|..|++|.+++|.+.. ++....- .+
T Consensus 133 LS~N~IetIPn~lfinLtDLLfLDLS~NrLe~-LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl 211 (1255)
T KOG0444|consen 133 LSYNNIETIPNSLFINLTDLLFLDLSNNRLEM-LPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTL 211 (1255)
T ss_pred cccCccccCCchHHHhhHhHhhhccccchhhh-cCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchh
Confidence 99999876655567788999999999999976 67778888888888898885432 2211100 01
Q ss_pred hccc-CCCCCCCccEEEccCCcCccchhhcCCCCCCcEEECCCCCCCCCc-CcCCCCCCCEEECCCCCCCCccccccccc
Q 002315 159 VEIK-DSPQWNRLSFVSCSCNRLVIMDESLQLLPAVETLDLSRNKFAKVD-NLRKCVNLKHLDLGFNNLRSIAAFSEVSC 236 (937)
Q Consensus 159 ~~l~-~l~~l~~L~~L~Ls~N~Ls~LP~sL~~L~~L~~LdLs~N~L~~l~-~L~~L~~L~~LdLS~N~Lt~L~~l~~~l~ 236 (937)
..++ .+..+.+|..++++.|.+..+|+.+..+++|+.|+||+|+|+.+. ......+|++|+||.|+++.+|.....++
T Consensus 212 ~N~Ptsld~l~NL~dvDlS~N~Lp~vPecly~l~~LrrLNLS~N~iteL~~~~~~W~~lEtLNlSrNQLt~LP~avcKL~ 291 (1255)
T KOG0444|consen 212 DNIPTSLDDLHNLRDVDLSENNLPIVPECLYKLRNLRRLNLSGNKITELNMTEGEWENLETLNLSRNQLTVLPDAVCKLT 291 (1255)
T ss_pred hcCCCchhhhhhhhhccccccCCCcchHHHhhhhhhheeccCcCceeeeeccHHHHhhhhhhccccchhccchHHHhhhH
Confidence 1111 123566788888888888888888888888888888888888875 45566788888888888888888777778
Q ss_pred ccceecccCccccc--cc-cCCCCCCCCEEEccCCCCCCCchhhhhcCCCCCCEEEecCCCCCCCcchhhhHhhhcCCCc
Q 002315 237 HIVKLVLRNNALTT--LR-GIENLKSLEGLDISYNIISTFSELEFLASLPYLLNLWLEGNPLCCSRWYRAQVFSYFAHPA 313 (937)
Q Consensus 237 sL~~L~Ls~N~Lt~--Lp-~L~~L~sL~~LdLS~N~Ls~l~~l~~L~~L~sL~~L~Ls~NpLt~~~~~r~~~~~~l~~L~ 313 (937)
.|+.|.+.+|+++- || +++.+..|+.+.+++|.+.-.| ..+..+++|+.|.|+.|.+...| ..+-.++.|.
T Consensus 292 kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~LElVP--EglcRC~kL~kL~L~~NrLiTLP----eaIHlL~~l~ 365 (1255)
T KOG0444|consen 292 KLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNKLELVP--EGLCRCVKLQKLKLDHNRLITLP----EAIHLLPDLK 365 (1255)
T ss_pred HHHHHHhccCcccccCCccchhhhhhhHHHHhhccccccCc--hhhhhhHHHHHhcccccceeech----hhhhhcCCcc
Confidence 88888888887654 66 8888888888888888888877 67888899999999999987665 5566788899
Q ss_pred eeccCCcc
Q 002315 314 KLKVDGKE 321 (937)
Q Consensus 314 ~L~LdgN~ 321 (937)
.|+|..|+
T Consensus 366 vLDlreNp 373 (1255)
T KOG0444|consen 366 VLDLRENP 373 (1255)
T ss_pred eeeccCCc
Confidence 99999885
No 8
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.73 E-value=9.3e-20 Score=200.42 Aligned_cols=242 Identities=27% Similarity=0.319 Sum_probs=181.8
Q ss_pred hcCCcEEEecCCCccchHhhhhhcccchhccCCCCCcccccccccCCCCCcchHHHHHhcCCCCCcEEEccCCCCCCCCC
Q 002315 25 IEGSIVLKLNPAGLHYVQSRLEALRELERLLAGAPLDYLRAYVSDLGDHRALEQLRRILKLLTSLKVVSALPPPARDPTP 104 (937)
Q Consensus 25 L~~l~~L~L~~~~L~~Lp~~L~~L~~Le~L~~g~~L~~L~l~vLdLs~n~~le~Lp~~L~~L~~Lk~LdLs~N~Is~~iP 104 (937)
+..+.+|.+..+.+..+|..++.+..+..+ +.+.| .+.++|..+..+++|+.|+++.|.+.. +|
T Consensus 67 L~~l~vl~~~~n~l~~lp~aig~l~~l~~l--------------~vs~n-~ls~lp~~i~s~~~l~~l~~s~n~~~e-l~ 130 (565)
T KOG0472|consen 67 LACLTVLNVHDNKLSQLPAAIGELEALKSL--------------NVSHN-KLSELPEQIGSLISLVKLDCSSNELKE-LP 130 (565)
T ss_pred ccceeEEEeccchhhhCCHHHHHHHHHHHh--------------hcccc-hHhhccHHHhhhhhhhhhhccccceee-cC
Confidence 334456666666666666666655544333 23333 355677777888888888888887764 46
Q ss_pred CCCCCCCCCcEEEeeCCCCCccchhhHhhhhhhhhhhhccCCCcccchhcccchhcccCCCCCCCccEEEccCCcCccch
Q 002315 105 LSLLPFCRLKVLELRGCDLSTSAAKGLLELRHTLEKIICHNSTNALRHVFASRIVEIKDSPQWNRLSFVSCSCNRLVIMD 184 (937)
Q Consensus 105 ~sLs~L~~L~~LdLS~N~Ls~~lp~~L~~L~~Ll~LlL~~N~L~~L~~l~~~~i~~l~~l~~l~~L~~L~Ls~N~Ls~LP 184 (937)
+.++.+..|..|+..+|+++. .|.++..+.++..+++.+|.+..++... ..|+.|+.|++..|-++.+|
T Consensus 131 ~~i~~~~~l~dl~~~~N~i~s-lp~~~~~~~~l~~l~~~~n~l~~l~~~~----------i~m~~L~~ld~~~N~L~tlP 199 (565)
T KOG0472|consen 131 DSIGRLLDLEDLDATNNQISS-LPEDMVNLSKLSKLDLEGNKLKALPENH----------IAMKRLKHLDCNSNLLETLP 199 (565)
T ss_pred chHHHHhhhhhhhcccccccc-CchHHHHHHHHHHhhccccchhhCCHHH----------HHHHHHHhcccchhhhhcCC
Confidence 677788888888888888865 6777777777778888887766665432 13667888888888888888
Q ss_pred hhcCCCCCCcEEECCCCCCCCCcCcCCCCCCCEEECCCCCCCCcccccc-cccccceecccCccccccc-cCCCCCCCCE
Q 002315 185 ESLQLLPAVETLDLSRNKFAKVDNLRKCVNLKHLDLGFNNLRSIAAFSE-VSCHIVKLVLRNNALTTLR-GIENLKSLEG 262 (937)
Q Consensus 185 ~sL~~L~~L~~LdLs~N~L~~l~~L~~L~~L~~LdLS~N~Lt~L~~l~~-~l~sL~~L~Ls~N~Lt~Lp-~L~~L~sL~~ 262 (937)
+.++.+.+|..|+|.+|+|..+|.|.++..|+.|.++.|.|..+|.... .+++|..|||..|+++.+| .+..+.+|..
T Consensus 200 ~~lg~l~~L~~LyL~~Nki~~lPef~gcs~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLRdNklke~Pde~clLrsL~r 279 (565)
T KOG0472|consen 200 PELGGLESLELLYLRRNKIRFLPEFPGCSLLKELHVGENQIEMLPAEHLKHLNSLLVLDLRDNKLKEVPDEICLLRSLER 279 (565)
T ss_pred hhhcchhhhHHHHhhhcccccCCCCCccHHHHHHHhcccHHHhhHHHHhcccccceeeeccccccccCchHHHHhhhhhh
Confidence 8888888888888888888888888888888888888888888876443 6778888888888888887 6677788888
Q ss_pred EEccCCCCCCCchhhhhcCCCCCCEEEecCCCCC
Q 002315 263 LDISYNIISTFSELEFLASLPYLLNLWLEGNPLC 296 (937)
Q Consensus 263 LdLS~N~Ls~l~~l~~L~~L~sL~~L~Ls~NpLt 296 (937)
|||++|.|+.+| ..++++ .|+.|-+.|||+.
T Consensus 280 LDlSNN~is~Lp--~sLgnl-hL~~L~leGNPlr 310 (565)
T KOG0472|consen 280 LDLSNNDISSLP--YSLGNL-HLKFLALEGNPLR 310 (565)
T ss_pred hcccCCccccCC--cccccc-eeeehhhcCCchH
Confidence 888888888887 567788 7888888888885
No 9
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.68 E-value=4.2e-19 Score=195.29 Aligned_cols=229 Identities=19% Similarity=0.193 Sum_probs=165.2
Q ss_pred HHHHHhcCCCCCcEEEccCCCCCCCCCCCCCCCCCCcEEEeeCCCCCccchhhHhhhhhhhhhhhccCCCcccchhcccc
Q 002315 78 QLRRILKLLTSLKVVSALPPPARDPTPLSLLPFCRLKVLELRGCDLSTSAAKGLLELRHTLEKIICHNSTNALRHVFASR 157 (937)
Q Consensus 78 ~Lp~~L~~L~~Lk~LdLs~N~Is~~iP~sLs~L~~L~~LdLS~N~Ls~~lp~~L~~L~~Ll~LlL~~N~L~~L~~l~~~~ 157 (937)
++|..++.+..++.|+.++|++. .+|..+..+.+|..|+.+.|.+.. +|..++.+..+..+...+|++.++++.+.
T Consensus 82 ~lp~aig~l~~l~~l~vs~n~ls-~lp~~i~s~~~l~~l~~s~n~~~e-l~~~i~~~~~l~dl~~~~N~i~slp~~~~-- 157 (565)
T KOG0472|consen 82 QLPAAIGELEALKSLNVSHNKLS-ELPEQIGSLISLVKLDCSSNELKE-LPDSIGRLLDLEDLDATNNQISSLPEDMV-- 157 (565)
T ss_pred hCCHHHHHHHHHHHhhcccchHh-hccHHHhhhhhhhhhhccccceee-cCchHHHHhhhhhhhccccccccCchHHH--
Confidence 34444555555555555555544 234455555555555555555543 44455555555555555555555554332
Q ss_pred hhcccCCCCCCCccEEEccCCcCccchhhcCCCCCCcEEECCCCCCCCCc-CcCCCCCCCEEECCCCCCCCccccccccc
Q 002315 158 IVEIKDSPQWNRLSFVSCSCNRLVIMDESLQLLPAVETLDLSRNKFAKVD-NLRKCVNLKHLDLGFNNLRSIAAFSEVSC 236 (937)
Q Consensus 158 i~~l~~l~~l~~L~~L~Ls~N~Ls~LP~sL~~L~~L~~LdLs~N~L~~l~-~L~~L~~L~~LdLS~N~Lt~L~~l~~~l~ 236 (937)
.+.+|..|++.+|++..+|+..-.|+.|++|++..|.++.+| .++.+.+|.-|+|..|+|..+|. +..+.
T Consensus 158 --------~~~~l~~l~~~~n~l~~l~~~~i~m~~L~~ld~~~N~L~tlP~~lg~l~~L~~LyL~~Nki~~lPe-f~gcs 228 (565)
T KOG0472|consen 158 --------NLSKLSKLDLEGNKLKALPENHIAMKRLKHLDCNSNLLETLPPELGGLESLELLYLRRNKIRFLPE-FPGCS 228 (565)
T ss_pred --------HHHHHHHhhccccchhhCCHHHHHHHHHHhcccchhhhhcCChhhcchhhhHHHHhhhcccccCCC-CCccH
Confidence 345677888888888888776666888899999888888875 78888999999999999998884 44567
Q ss_pred ccceecccCccccccc--cCCCCCCCCEEEccCCCCCCCchhhhhcCCCCCCEEEecCCCCCCCcchhhhHhhhcCCCce
Q 002315 237 HIVKLVLRNNALTTLR--GIENLKSLEGLDISYNIISTFSELEFLASLPYLLNLWLEGNPLCCSRWYRAQVFSYFAHPAK 314 (937)
Q Consensus 237 sL~~L~Ls~N~Lt~Lp--~L~~L~sL~~LdLS~N~Ls~l~~l~~L~~L~sL~~L~Ls~NpLt~~~~~r~~~~~~l~~L~~ 314 (937)
.|..|+++.|.|..+| ....+++|.+|||+.|+++.+| +.+..+.+|..|++++|.|+..+ ..+..+ .|+.
T Consensus 229 ~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLRdNklke~P--de~clLrsL~rLDlSNN~is~Lp----~sLgnl-hL~~ 301 (565)
T KOG0472|consen 229 LLKELHVGENQIEMLPAEHLKHLNSLLVLDLRDNKLKEVP--DEICLLRSLERLDLSNNDISSLP----YSLGNL-HLKF 301 (565)
T ss_pred HHHHHHhcccHHHhhHHHHhcccccceeeeccccccccCc--hHHHHhhhhhhhcccCCccccCC----cccccc-eeee
Confidence 8999999999998887 5668999999999999999998 56778889999999999998776 334556 7888
Q ss_pred eccCCccCChhh
Q 002315 315 LKVDGKEISTRE 326 (937)
Q Consensus 315 L~LdgN~Is~~e 326 (937)
+.|.|||+....
T Consensus 302 L~leGNPlrTiR 313 (565)
T KOG0472|consen 302 LALEGNPLRTIR 313 (565)
T ss_pred hhhcCCchHHHH
Confidence 999999997543
No 10
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=99.68 E-value=2.5e-17 Score=175.83 Aligned_cols=303 Identities=25% Similarity=0.336 Sum_probs=218.7
Q ss_pred HHHHHHhccCchhcCCcEEEecCCCccchHhhhhhcccchhccCCCCCcccccccccCCCCCcchHHHHHhcCCCCCcEE
Q 002315 13 LVKFVEQQAGPLIEGSIVLKLNPAGLHYVQSRLEALRELERLLAGAPLDYLRAYVSDLGDHRALEQLRRILKLLTSLKVV 92 (937)
Q Consensus 13 ~v~~L~~~~~~lL~~l~~L~L~~~~L~~Lp~~L~~L~~Le~L~~g~~L~~L~l~vLdLs~n~~le~Lp~~L~~L~~Lk~L 92 (937)
+.+.+-..++.++..-+...+.+..+..+.++++. .....+..+.+ ..+ ..++.-+.+|++|
T Consensus 126 la~~~~e~g~~ll~~~~~~~~~~l~~yaise~l~~-~~p~~~~~~~k--------------~d~---~hildf~~~l~~l 187 (490)
T KOG1259|consen 126 LAKLFNESGDALLSSKKEYNLSALEVYAISERLSL-PCPPSLDRGGK--------------YDF---SHVLDFCTQLVAL 187 (490)
T ss_pred HHHHHHhhhHHHhccCceecccchhhhhHHHHhcC-CCCCccCCCCc--------------cch---HHHHHhhhheeEE
Confidence 34444455667777778888988888888887752 21222222211 112 2233345666676
Q ss_pred EccC--------CCCCCCCCCCCCCCCCCcEEEeeCCCCCccchhhHhhh-hhhhhhhhccCCCcccchhcccch-----
Q 002315 93 SALP--------PPARDPTPLSLLPFCRLKVLELRGCDLSTSAAKGLLEL-RHTLEKIICHNSTNALRHVFASRI----- 158 (937)
Q Consensus 93 dLs~--------N~Is~~iP~sLs~L~~L~~LdLS~N~Ls~~lp~~L~~L-~~Ll~LlL~~N~L~~L~~l~~~~i----- 158 (937)
-.+. |-+...+|-.+.-+.+|..+.++.|.-..+. ++..+ +.|.++......+...+.+.+...
T Consensus 188 ~vs~~~~p~~~sni~~~~l~f~l~~f~~l~~~~~s~~~~~~i~--~~~~~kptl~t~~v~~s~~~~~~~l~pe~~~~D~~ 265 (490)
T KOG1259|consen 188 VVTPVKDPIDRSNIIPNRLSFNLNAFRNLKTLKFSALSTENIV--DIELLKPTLQTICVHNTTIQDVPSLLPETILADPS 265 (490)
T ss_pred EecCCCCCCccccccccccccchHHhhhhheeeeeccchhhee--ceeecCchhheeeeecccccccccccchhhhcCcc
Confidence 6654 2223344555666777888887777533211 11111 112222222222222222211100
Q ss_pred ---------hcccCCCCCCCccEEEccCCcCccchhhcCCCCCCcEEECCCCCCCCCcCcCCCCCCCEEECCCCCCCCcc
Q 002315 159 ---------VEIKDSPQWNRLSFVSCSCNRLVIMDESLQLLPAVETLDLSRNKFAKVDNLRKCVNLKHLDLGFNNLRSIA 229 (937)
Q Consensus 159 ---------~~l~~l~~l~~L~~L~Ls~N~Ls~LP~sL~~L~~L~~LdLs~N~L~~l~~L~~L~~L~~LdLS~N~Lt~L~ 229 (937)
.-...+..|..|+.|+|++|.|+.+.++..-+|.++.|++++|.|..+..+..+++|+.|||++|.++.+.
T Consensus 266 ~~E~~t~~G~~~~~~dTWq~LtelDLS~N~I~~iDESvKL~Pkir~L~lS~N~i~~v~nLa~L~~L~~LDLS~N~Ls~~~ 345 (490)
T KOG1259|consen 266 GSEPSTSNGSALVSADTWQELTELDLSGNLITQIDESVKLAPKLRRLILSQNRIRTVQNLAELPQLQLLDLSGNLLAECV 345 (490)
T ss_pred CCCCCccCCceEEecchHhhhhhccccccchhhhhhhhhhccceeEEeccccceeeehhhhhcccceEeecccchhHhhh
Confidence 11122467899999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccccccceecccCccccccccCCCCCCCCEEEccCCCCCCCchhhhhcCCCCCCEEEecCCCCCCCcchhhhHhhhc
Q 002315 230 AFSEVSCHIVKLVLRNNALTTLRGIENLKSLEGLDISYNIISTFSELEFLASLPYLLNLWLEGNPLCCSRWYRAQVFSYF 309 (937)
Q Consensus 230 ~l~~~l~sL~~L~Ls~N~Lt~Lp~L~~L~sL~~LdLS~N~Ls~l~~l~~L~~L~sL~~L~Ls~NpLt~~~~~r~~~~~~l 309 (937)
.+...+.++++|.|+.|.|..+.++..+-+|..||+++|+|..+.....++++|.|+.|.|.+||+...+.||..++..|
T Consensus 346 Gwh~KLGNIKtL~La~N~iE~LSGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~~vdYRTKVLa~F 425 (490)
T KOG1259|consen 346 GWHLKLGNIKTLKLAQNKIETLSGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAGSVDYRTKVLARF 425 (490)
T ss_pred hhHhhhcCEeeeehhhhhHhhhhhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCccccchHHHHHHHHH
Confidence 98888899999999999999999999999999999999999999988999999999999999999999999999998776
Q ss_pred CC-CceeccCCccCChhhHHHHHHHHH
Q 002315 310 AH-PAKLKVDGKEISTRELWERQLIIA 335 (937)
Q Consensus 310 ~~-L~~L~LdgN~Is~~e~~~~~~l~~ 335 (937)
-. -..+.||+.+-+..+.....+..+
T Consensus 426 GERaSE~~LD~~~~~~~ELDTV~Vl~A 452 (490)
T KOG1259|consen 426 GERASEISLDNEPGNQQELDTVLVLSA 452 (490)
T ss_pred hhhhhheecCCCCcchhhhhHHHHHHH
Confidence 54 467899999988888776655543
No 11
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.67 E-value=2.9e-16 Score=191.22 Aligned_cols=250 Identities=22% Similarity=0.210 Sum_probs=151.2
Q ss_pred CchhcCCcEEEecCCCccchHhhhhhcccchhccCCCCCcccccccccCCCCCcchHHHHHhcCCCCCcEEEccCCCCCC
Q 002315 22 GPLIEGSIVLKLNPAGLHYVQSRLEALRELERLLAGAPLDYLRAYVSDLGDHRALEQLRRILKLLTSLKVVSALPPPARD 101 (937)
Q Consensus 22 ~~lL~~l~~L~L~~~~L~~Lp~~L~~L~~Le~L~~g~~L~~L~l~vLdLs~n~~le~Lp~~L~~L~~Lk~LdLs~N~Is~ 101 (937)
..+-.+..+|++....|..+|..+.. .|.. +++.+|+ +..+|. .+++|++|+|++|+|+.
T Consensus 197 ~Cl~~~~~~LdLs~~~LtsLP~~l~~--~L~~--------------L~L~~N~-Lt~LP~---lp~~Lk~LdLs~N~Lts 256 (788)
T PRK15387 197 ACLNNGNAVLNVGESGLTTLPDCLPA--HITT--------------LVIPDNN-LTSLPA---LPPELRTLEVSGNQLTS 256 (788)
T ss_pred HHhcCCCcEEEcCCCCCCcCCcchhc--CCCE--------------EEccCCc-CCCCCC---CCCCCcEEEecCCccCc
Confidence 34445677899999999988875531 2222 2333333 334553 25778888888887775
Q ss_pred CCCCCCCCCCCCcEEEeeCCCCCccchhhHhhhhhhhhhhhccCCCcccchhcccchhcccCCCCCCCccEEEccCCcCc
Q 002315 102 PTPLSLLPFCRLKVLELRGCDLSTSAAKGLLELRHTLEKIICHNSTNALRHVFASRIVEIKDSPQWNRLSFVSCSCNRLV 181 (937)
Q Consensus 102 ~iP~sLs~L~~L~~LdLS~N~Ls~~lp~~L~~L~~Ll~LlL~~N~L~~L~~l~~~~i~~l~~l~~l~~L~~L~Ls~N~Ls 181 (937)
+ |.. .++|+.|+|++|.|+. +|..+ ..|..+.+.+|++..++.. +++|+.|+|++|.|+
T Consensus 257 L-P~l---p~sL~~L~Ls~N~L~~-Lp~lp---~~L~~L~Ls~N~Lt~LP~~-------------p~~L~~LdLS~N~L~ 315 (788)
T PRK15387 257 L-PVL---PPGLLELSIFSNPLTH-LPALP---SGLCKLWIFGNQLTSLPVL-------------PPGLQELSVSDNQLA 315 (788)
T ss_pred c-cCc---ccccceeeccCCchhh-hhhch---hhcCEEECcCCcccccccc-------------ccccceeECCCCccc
Confidence 4 432 3577777777777764 33322 2334455666665554431 123455555555544
Q ss_pred cchhhcC-----------------CCCCCcEEECCCCCCCCCcCcCCCCCCCEEECCCCCCCCcccccccccccceeccc
Q 002315 182 IMDESLQ-----------------LLPAVETLDLSRNKFAKVDNLRKCVNLKHLDLGFNNLRSIAAFSEVSCHIVKLVLR 244 (937)
Q Consensus 182 ~LP~sL~-----------------~L~~L~~LdLs~N~L~~l~~L~~L~~L~~LdLS~N~Lt~L~~l~~~l~sL~~L~Ls 244 (937)
.+|.... ...+|+.|+|++|+|+.+|.+ ..+|+.|++++|.|+.+|.. ...|+.|+|+
T Consensus 316 ~Lp~lp~~L~~L~Ls~N~L~~LP~lp~~Lq~LdLS~N~Ls~LP~l--p~~L~~L~Ls~N~L~~LP~l---~~~L~~LdLs 390 (788)
T PRK15387 316 SLPALPSELCKLWAYNNQLTSLPTLPSGLQELSVSDNQLASLPTL--PSELYKLWAYNNRLTSLPAL---PSGLKELIVS 390 (788)
T ss_pred cCCCCcccccccccccCccccccccccccceEecCCCccCCCCCC--CcccceehhhccccccCccc---ccccceEEec
Confidence 4432110 113566666666666665533 24566666666666665543 2457777777
Q ss_pred CccccccccCCCCCCCCEEEccCCCCCCCchhhhhcCCCCCCEEEecCCCCCCCcchhhhHhhhcCCCceeccCCccCCh
Q 002315 245 NNALTTLRGIENLKSLEGLDISYNIISTFSELEFLASLPYLLNLWLEGNPLCCSRWYRAQVFSYFAHPAKLKVDGKEIST 324 (937)
Q Consensus 245 ~N~Lt~Lp~L~~L~sL~~LdLS~N~Ls~l~~l~~L~~L~sL~~L~Ls~NpLt~~~~~r~~~~~~l~~L~~L~LdgN~Is~ 324 (937)
+|.|+.+|.+ .++|+.|+|++|+|+.+|.. ..+|+.|+|++|.|+..| ..+..++.|..++|++|+++.
T Consensus 391 ~N~Lt~LP~l--~s~L~~LdLS~N~LssIP~l-----~~~L~~L~Ls~NqLt~LP----~sl~~L~~L~~LdLs~N~Ls~ 459 (788)
T PRK15387 391 GNRLTSLPVL--PSELKELMVSGNRLTSLPML-----PSGLLSLSVYRNQLTRLP----ESLIHLSSETTVNLEGNPLSE 459 (788)
T ss_pred CCcccCCCCc--ccCCCEEEccCCcCCCCCcc-----hhhhhhhhhccCcccccC----hHHhhccCCCeEECCCCCCCc
Confidence 7777776643 35677888888888777631 236777888888887544 345678889999999999987
Q ss_pred hhHH
Q 002315 325 RELW 328 (937)
Q Consensus 325 ~e~~ 328 (937)
....
T Consensus 460 ~~~~ 463 (788)
T PRK15387 460 RTLQ 463 (788)
T ss_pred hHHH
Confidence 6544
No 12
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.65 E-value=3.6e-16 Score=191.01 Aligned_cols=264 Identities=19% Similarity=0.199 Sum_probs=197.8
Q ss_pred CchhcCCcEEEecCCCccchHhhhhhcccchhccCCCCCcccccccccCCCCCcchHHHHHhcCCCCCcEEEccCCCCCC
Q 002315 22 GPLIEGSIVLKLNPAGLHYVQSRLEALRELERLLAGAPLDYLRAYVSDLGDHRALEQLRRILKLLTSLKVVSALPPPARD 101 (937)
Q Consensus 22 ~~lL~~l~~L~L~~~~L~~Lp~~L~~L~~Le~L~~g~~L~~L~l~vLdLs~n~~le~Lp~~L~~L~~Lk~LdLs~N~Is~ 101 (937)
..+..+...|++...++..+|..+. .. +..+++++|. +..+|..+. ++|+.|+|++|.++.
T Consensus 174 ~Cl~~~~~~L~L~~~~LtsLP~~Ip--~~--------------L~~L~Ls~N~-LtsLP~~l~--~nL~~L~Ls~N~Lts 234 (754)
T PRK15370 174 DCLKNNKTELRLKILGLTTIPACIP--EQ--------------ITTLILDNNE-LKSLPENLQ--GNIKTLYANSNQLTS 234 (754)
T ss_pred hhcccCceEEEeCCCCcCcCCcccc--cC--------------CcEEEecCCC-CCcCChhhc--cCCCEEECCCCcccc
Confidence 3455667789998888888875432 11 2235566654 446776543 589999999999885
Q ss_pred CCCCCCCCCCCCcEEEeeCCCCCccchhhHhhhhhhhhhhhccCCCcccchhcccchhcccCCCCCCCccEEEccCCcCc
Q 002315 102 PTPLSLLPFCRLKVLELRGCDLSTSAAKGLLELRHTLEKIICHNSTNALRHVFASRIVEIKDSPQWNRLSFVSCSCNRLV 181 (937)
Q Consensus 102 ~iP~sLs~L~~L~~LdLS~N~Ls~~lp~~L~~L~~Ll~LlL~~N~L~~L~~l~~~~i~~l~~l~~l~~L~~L~Ls~N~Ls 181 (937)
+|..+. ++|+.|+|++|.+.. +|..+. ..|..|.+++|++..++..+ .++|+.|++++|+|+
T Consensus 235 -LP~~l~--~~L~~L~Ls~N~L~~-LP~~l~--s~L~~L~Ls~N~L~~LP~~l------------~~sL~~L~Ls~N~Lt 296 (754)
T PRK15370 235 -IPATLP--DTIQEMELSINRITE-LPERLP--SALQSLDLFHNKISCLPENL------------PEELRYLSVYDNSIR 296 (754)
T ss_pred -CChhhh--ccccEEECcCCccCc-CChhHh--CCCCEEECcCCccCcccccc------------CCCCcEEECCCCccc
Confidence 466553 589999999999985 666654 36777888888877665422 137999999999999
Q ss_pred cchhhcCCCCCCcEEECCCCCCCCCcCcCCCCCCCEEECCCCCCCCcccccccccccceecccCcccccccc-CCCCCCC
Q 002315 182 IMDESLQLLPAVETLDLSRNKFAKVDNLRKCVNLKHLDLGFNNLRSIAAFSEVSCHIVKLVLRNNALTTLRG-IENLKSL 260 (937)
Q Consensus 182 ~LP~sL~~L~~L~~LdLs~N~L~~l~~L~~L~~L~~LdLS~N~Lt~L~~l~~~l~sL~~L~Ls~N~Lt~Lp~-L~~L~sL 260 (937)
.+|..+. ++|+.|+|++|.++.++.. -.++|+.|++++|.++.+|... +++|+.|+|++|+|+.+|. + .++|
T Consensus 297 ~LP~~lp--~sL~~L~Ls~N~Lt~LP~~-l~~sL~~L~Ls~N~Lt~LP~~l--~~sL~~L~Ls~N~L~~LP~~l--p~~L 369 (754)
T PRK15370 297 TLPAHLP--SGITHLNVQSNSLTALPET-LPPGLKTLEAGENALTSLPASL--PPELQVLDVSKNQITVLPETL--PPTI 369 (754)
T ss_pred cCcccch--hhHHHHHhcCCccccCCcc-ccccceeccccCCccccCChhh--cCcccEEECCCCCCCcCChhh--cCCc
Confidence 9886543 4799999999999987631 2368999999999999987643 3689999999999998873 3 3689
Q ss_pred CEEEccCCCCCCCchhhhhcCCCCCCEEEecCCCCCCCcchhhhHhhhcCCCceeccCCccCChhhHHHHHHH
Q 002315 261 EGLDISYNIISTFSELEFLASLPYLLNLWLEGNPLCCSRWYRAQVFSYFAHPAKLKVDGKEISTRELWERQLI 333 (937)
Q Consensus 261 ~~LdLS~N~Ls~l~~l~~L~~L~sL~~L~Ls~NpLt~~~~~r~~~~~~l~~L~~L~LdgN~Is~~e~~~~~~l 333 (937)
+.|+|++|.|+.+|. .+. ..|+.|++++|.+...+......+..++.+..+.|.+|+++.......+.+
T Consensus 370 ~~LdLs~N~Lt~LP~--~l~--~sL~~LdLs~N~L~~LP~sl~~~~~~~~~l~~L~L~~Npls~~tl~~L~~L 438 (754)
T PRK15370 370 TTLDVSRNALTNLPE--NLP--AALQIMQASRNNLVRLPESLPHFRGEGPQPTRIIVEYNPFSERTIQNMQRL 438 (754)
T ss_pred CEEECCCCcCCCCCH--hHH--HHHHHHhhccCCcccCchhHHHHhhcCCCccEEEeeCCCccHHHHHHHHHh
Confidence 999999999999874 232 369999999999987764333444456788999999999997655544333
No 13
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.65 E-value=2.8e-17 Score=195.69 Aligned_cols=268 Identities=21% Similarity=0.167 Sum_probs=186.8
Q ss_pred CCcEEEecCCCccchHhhhhhcccchhccCCCCCcccccccccCCCCCcchHHHHHhcCCCCCcEEEccCCCCCCCCCCC
Q 002315 27 GSIVLKLNPAGLHYVQSRLEALRELERLLAGAPLDYLRAYVSDLGDHRALEQLRRILKLLTSLKVVSALPPPARDPTPLS 106 (937)
Q Consensus 27 ~l~~L~L~~~~L~~Lp~~L~~L~~Le~L~~g~~L~~L~l~vLdLs~n~~le~Lp~~L~~L~~Lk~LdLs~N~Is~~iP~s 106 (937)
++..+++..+.+..+|+.+..+.+|+.+. ... +.+..+|..+..+.+|+.|++..|.+.. +|..
T Consensus 242 nl~~~dis~n~l~~lp~wi~~~~nle~l~--------------~n~-N~l~~lp~ri~~~~~L~~l~~~~nel~y-ip~~ 305 (1081)
T KOG0618|consen 242 NLQYLDISHNNLSNLPEWIGACANLEALN--------------ANH-NRLVALPLRISRITSLVSLSAAYNELEY-IPPF 305 (1081)
T ss_pred cceeeecchhhhhcchHHHHhcccceEec--------------ccc-hhHHhhHHHHhhhhhHHHHHhhhhhhhh-CCCc
Confidence 34455555555555554444444433332 222 2235566666666677777776666653 3566
Q ss_pred CCCCCCCcEEEeeCCCCCccchhhHhhhhh-hhhhhhccCCCcccchhcccchhcccCCCCCCCccEEEccCCcCc-cch
Q 002315 107 LLPFCRLKVLELRGCDLSTSAAKGLLELRH-TLEKIICHNSTNALRHVFASRIVEIKDSPQWNRLSFVSCSCNRLV-IMD 184 (937)
Q Consensus 107 Ls~L~~L~~LdLS~N~Ls~~lp~~L~~L~~-Ll~LlL~~N~L~~L~~l~~~~i~~l~~l~~l~~L~~L~Ls~N~Ls-~LP 184 (937)
+.+++.|++|+|..|+|....+..+..+.. +..+..+.|.+..++..-. ..++.|+.|++.+|.++ ..-
T Consensus 306 le~~~sL~tLdL~~N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e---------~~~~~Lq~LylanN~Ltd~c~ 376 (1081)
T KOG0618|consen 306 LEGLKSLRTLDLQSNNLPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEE---------NNHAALQELYLANNHLTDSCF 376 (1081)
T ss_pred ccccceeeeeeehhccccccchHHHhhhhHHHHHHhhhhccccccccccc---------hhhHHHHHHHHhcCcccccch
Confidence 677788888888888886533322322222 3334444555444442111 23567999999999999 444
Q ss_pred hhcCCCCCCcEEECCCCCCCCCc--CcCCCCCCCEEECCCCCCCCcccccccccccceecccCccccccccCCCCCCCCE
Q 002315 185 ESLQLLPAVETLDLSRNKFAKVD--NLRKCVNLKHLDLGFNNLRSIAAFSEVSCHIVKLVLRNNALTTLRGIENLKSLEG 262 (937)
Q Consensus 185 ~sL~~L~~L~~LdLs~N~L~~l~--~L~~L~~L~~LdLS~N~Lt~L~~l~~~l~sL~~L~Ls~N~Lt~Lp~L~~L~sL~~ 262 (937)
+.+-++++|+.|+|++|+|..+| .+.++..|+.|+||+|+|+.+|.....++.|++|...+|.|..+|.+..++.|+.
T Consensus 377 p~l~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~~Lp~tva~~~~L~tL~ahsN~l~~fPe~~~l~qL~~ 456 (1081)
T KOG0618|consen 377 PVLVNFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLTTLPDTVANLGRLHTLRAHSNQLLSFPELAQLPQLKV 456 (1081)
T ss_pred hhhccccceeeeeecccccccCCHHHHhchHHhHHHhcccchhhhhhHHHHhhhhhHHHhhcCCceeechhhhhcCcceE
Confidence 56788999999999999999987 6889999999999999999999888888999999999999999999999999999
Q ss_pred EEccCCCCCCCchhhhhcCCCCCCEEEecCCCCCCCcchhhhHhhhcCCCceeccCCccCC
Q 002315 263 LDISYNIISTFSELEFLASLPYLLNLWLEGNPLCCSRWYRAQVFSYFAHPAKLKVDGKEIS 323 (937)
Q Consensus 263 LdLS~N~Ls~l~~l~~L~~L~sL~~L~Ls~NpLt~~~~~r~~~~~~l~~L~~L~LdgN~Is 323 (937)
+||+.|.|+.+.. ......++|++|+|+||..... ....+..++.+..+.++-++.+
T Consensus 457 lDlS~N~L~~~~l-~~~~p~p~LkyLdlSGN~~l~~---d~~~l~~l~~l~~~~i~~~~~~ 513 (1081)
T KOG0618|consen 457 LDLSCNNLSEVTL-PEALPSPNLKYLDLSGNTRLVF---DHKTLKVLKSLSQMDITLNNTP 513 (1081)
T ss_pred Eecccchhhhhhh-hhhCCCcccceeeccCCccccc---chhhhHHhhhhhheecccCCCC
Confidence 9999999987643 3333338999999999996433 2345566666777777766443
No 14
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.64 E-value=8.7e-17 Score=177.23 Aligned_cols=269 Identities=18% Similarity=0.156 Sum_probs=178.1
Q ss_pred cchHHHHHhcCCCCCcEEEccCCCCCCCCCCCCCCCCCCcEEEeeCCCCCccchhhHhhhhhhhhhhhcc-CCCcccchh
Q 002315 75 ALEQLRRILKLLTSLKVVSALPPPARDPTPLSLLPFCRLKVLELRGCDLSTSAAKGLLELRHTLEKIICH-NSTNALRHV 153 (937)
Q Consensus 75 ~le~Lp~~L~~L~~Lk~LdLs~N~Is~~iP~sLs~L~~L~~LdLS~N~Ls~~lp~~L~~L~~Ll~LlL~~-N~L~~L~~l 153 (937)
.+.++|..+ -+.-..|.|..|.|+.+.|.+|+.+++|+.|||++|.|+.+.|.+|..|+.+.++.+.+ |+|+.++..
T Consensus 57 GL~eVP~~L--P~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~ 134 (498)
T KOG4237|consen 57 GLTEVPANL--PPETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKG 134 (498)
T ss_pred CcccCcccC--CCcceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhh
Confidence 345555421 13566777778888888788888888888888888888888888888888887777666 777777765
Q ss_pred cccchhccc---------------CCCCCCCccEEEccCCcCccchh-hcCCCCCCcEEECCCCCCCC---Cc-------
Q 002315 154 FASRIVEIK---------------DSPQWNRLSFVSCSCNRLVIMDE-SLQLLPAVETLDLSRNKFAK---VD------- 207 (937)
Q Consensus 154 ~~~~i~~l~---------------~l~~l~~L~~L~Ls~N~Ls~LP~-sL~~L~~L~~LdLs~N~L~~---l~------- 207 (937)
.++.+..+. .+..+++|..|.+..|.+..++. .|..+..++.+.+..|.+.. ++
T Consensus 135 ~F~gL~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a 214 (498)
T KOG4237|consen 135 AFGGLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLA 214 (498)
T ss_pred HhhhHHHHHHHhcChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccccchhhhHHh
Confidence 554332111 11234556666666666666655 56666666666666665221 00
Q ss_pred ----CcCCCCCCCEEECCCCCCC-------------------------C-ccc-ccccccccceecccCccccccc--cC
Q 002315 208 ----NLRKCVNLKHLDLGFNNLR-------------------------S-IAA-FSEVSCHIVKLVLRNNALTTLR--GI 254 (937)
Q Consensus 208 ----~L~~L~~L~~LdLS~N~Lt-------------------------~-L~~-l~~~l~sL~~L~Ls~N~Lt~Lp--~L 254 (937)
.++......-..|.++++. . .|. .+..+++|++|+|++|+|+.+. +|
T Consensus 215 ~~~ietsgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aF 294 (498)
T KOG4237|consen 215 MNPIETSGARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAF 294 (498)
T ss_pred hchhhcccceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhh
Confidence 1111111111111111111 1 111 2334789999999999999984 89
Q ss_pred CCCCCCCEEEccCCCCCCCchhhhhcCCCCCCEEEecCCCCCCCcchhhhHhhhcCCCceeccCCccCChhhHHHHHHHH
Q 002315 255 ENLKSLEGLDISYNIISTFSELEFLASLPYLLNLWLEGNPLCCSRWYRAQVFSYFAHPAKLKVDGKEISTRELWERQLII 334 (937)
Q Consensus 255 ~~L~sL~~LdLS~N~Ls~l~~l~~L~~L~sL~~L~Ls~NpLt~~~~~r~~~~~~l~~L~~L~LdgN~Is~~e~~~~~~l~ 334 (937)
..+..|+.|.|..|+|..+.. ..|..+..|+.|+|.+|+|++..+ ..|..+..|..+.|-+||+.|..+..+..-+
T Consensus 295 e~~a~l~eL~L~~N~l~~v~~-~~f~~ls~L~tL~L~~N~it~~~~---~aF~~~~~l~~l~l~~Np~~CnC~l~wl~~W 370 (498)
T KOG4237|consen 295 EGAAELQELYLTRNKLEFVSS-GMFQGLSGLKTLSLYDNQITTVAP---GAFQTLFSLSTLNLLSNPFNCNCRLAWLGEW 370 (498)
T ss_pred cchhhhhhhhcCcchHHHHHH-HhhhccccceeeeecCCeeEEEec---ccccccceeeeeehccCcccCccchHHHHHH
Confidence 999999999999999998765 678899999999999999997753 4577788899999999999999877665444
Q ss_pred HhhcCCCCCccccCC
Q 002315 335 ARRQKRPAGFGFYSP 349 (937)
Q Consensus 335 ~~~~~~p~~~~~~~p 349 (937)
.+.........|-.|
T Consensus 371 lr~~~~~~~~~Cq~p 385 (498)
T KOG4237|consen 371 LRKKSVVGNPRCQSP 385 (498)
T ss_pred HhhCCCCCCCCCCCC
Confidence 444333333334433
No 15
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.62 E-value=2e-15 Score=184.03 Aligned_cols=234 Identities=21% Similarity=0.174 Sum_probs=167.9
Q ss_pred cCCcEEEecCCCccchHhhhhhcccchhccCCCCCccc-----ccccccCCCCCcchHHHHHhcCCCCCcEEEccCCCCC
Q 002315 26 EGSIVLKLNPAGLHYVQSRLEALRELERLLAGAPLDYL-----RAYVSDLGDHRALEQLRRILKLLTSLKVVSALPPPAR 100 (937)
Q Consensus 26 ~~l~~L~L~~~~L~~Lp~~L~~L~~Le~L~~g~~L~~L-----~l~vLdLs~n~~le~Lp~~L~~L~~Lk~LdLs~N~Is 100 (937)
..+..|.+..+.|..||..+..|+.|..- +..++.+ .+..+++++|. +..+|.. +++|+.|+|++|.++
T Consensus 222 ~~L~~L~L~~N~Lt~LP~lp~~Lk~LdLs--~N~LtsLP~lp~sL~~L~Ls~N~-L~~Lp~l---p~~L~~L~Ls~N~Lt 295 (788)
T PRK15387 222 AHITTLVIPDNNLTSLPALPPELRTLEVS--GNQLTSLPVLPPGLLELSIFSNP-LTHLPAL---PSGLCKLWIFGNQLT 295 (788)
T ss_pred cCCCEEEccCCcCCCCCCCCCCCcEEEec--CCccCcccCcccccceeeccCCc-hhhhhhc---hhhcCEEECcCCccc
Confidence 35678888888888877644443332210 1112111 12345566554 4455553 356778888888877
Q ss_pred CCCCCCCCCCCCCcEEEeeCCCCCccchhhHhhhhhhhhhhhccCCCcccchhcccchhcccCCCCCCCccEEEccCCcC
Q 002315 101 DPTPLSLLPFCRLKVLELRGCDLSTSAAKGLLELRHTLEKIICHNSTNALRHVFASRIVEIKDSPQWNRLSFVSCSCNRL 180 (937)
Q Consensus 101 ~~iP~sLs~L~~L~~LdLS~N~Ls~~lp~~L~~L~~Ll~LlL~~N~L~~L~~l~~~~i~~l~~l~~l~~L~~L~Ls~N~L 180 (937)
.. |. .+++|+.|+|++|.|++ +|.... .|..|.+.+|.+..++.+ ..+|+.|+|++|+|
T Consensus 296 ~L-P~---~p~~L~~LdLS~N~L~~-Lp~lp~---~L~~L~Ls~N~L~~LP~l-------------p~~Lq~LdLS~N~L 354 (788)
T PRK15387 296 SL-PV---LPPGLQELSVSDNQLAS-LPALPS---ELCKLWAYNNQLTSLPTL-------------PSGLQELSVSDNQL 354 (788)
T ss_pred cc-cc---cccccceeECCCCcccc-CCCCcc---cccccccccCcccccccc-------------ccccceEecCCCcc
Confidence 54 43 24678888888888876 343222 344556677766555431 13799999999999
Q ss_pred ccchhhcCCCCCCcEEECCCCCCCCCcCcCCCCCCCEEECCCCCCCCcccccccccccceecccCccccccccCCCCCCC
Q 002315 181 VIMDESLQLLPAVETLDLSRNKFAKVDNLRKCVNLKHLDLGFNNLRSIAAFSEVSCHIVKLVLRNNALTTLRGIENLKSL 260 (937)
Q Consensus 181 s~LP~sL~~L~~L~~LdLs~N~L~~l~~L~~L~~L~~LdLS~N~Lt~L~~l~~~l~sL~~L~Ls~N~Lt~Lp~L~~L~sL 260 (937)
+.+|.. ..+|+.|++++|+|..++.+ +.+|+.|+|++|.|+.+|... ++|+.|+|++|.|+.+|.+ ..+|
T Consensus 355 s~LP~l---p~~L~~L~Ls~N~L~~LP~l--~~~L~~LdLs~N~Lt~LP~l~---s~L~~LdLS~N~LssIP~l--~~~L 424 (788)
T PRK15387 355 ASLPTL---PSELYKLWAYNNRLTSLPAL--PSGLKELIVSGNRLTSLPVLP---SELKELMVSGNRLTSLPML--PSGL 424 (788)
T ss_pred CCCCCC---CcccceehhhccccccCccc--ccccceEEecCCcccCCCCcc---cCCCEEEccCCcCCCCCcc--hhhh
Confidence 999864 45788999999999988754 368999999999999887643 6899999999999998853 4578
Q ss_pred CEEEccCCCCCCCchhhhhcCCCCCCEEEecCCCCCCC
Q 002315 261 EGLDISYNIISTFSELEFLASLPYLLNLWLEGNPLCCS 298 (937)
Q Consensus 261 ~~LdLS~N~Ls~l~~l~~L~~L~sL~~L~Ls~NpLt~~ 298 (937)
+.|+|++|+|+.+| ..+..+++|+.|+|++|+|++.
T Consensus 425 ~~L~Ls~NqLt~LP--~sl~~L~~L~~LdLs~N~Ls~~ 460 (788)
T PRK15387 425 LSLSVYRNQLTRLP--ESLIHLSSETTVNLEGNPLSER 460 (788)
T ss_pred hhhhhccCcccccC--hHHhhccCCCeEECCCCCCCch
Confidence 99999999999998 5688999999999999999854
No 16
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.61 E-value=7.6e-17 Score=192.01 Aligned_cols=254 Identities=22% Similarity=0.219 Sum_probs=168.4
Q ss_pred CcEEEecCCCccchHhhhhhcccchhccCCCCCcccccccccCCCCCcchHHHHHhcCCCCCcEEEccCCCCCCCCCCCC
Q 002315 28 SIVLKLNPAGLHYVQSRLEALRELERLLAGAPLDYLRAYVSDLGDHRALEQLRRILKLLTSLKVVSALPPPARDPTPLSL 107 (937)
Q Consensus 28 l~~L~L~~~~L~~Lp~~L~~L~~Le~L~~g~~L~~L~l~vLdLs~n~~le~Lp~~L~~L~~Lk~LdLs~N~Is~~iP~sL 107 (937)
++.|++..+.+...|..+..+..|+.+... .+.+..+|..+.++.+|++|.|.+|.+. ..|.++
T Consensus 47 L~~l~lsnn~~~~fp~~it~l~~L~~ln~s---------------~n~i~~vp~s~~~~~~l~~lnL~~n~l~-~lP~~~ 110 (1081)
T KOG0618|consen 47 LKSLDLSNNQISSFPIQITLLSHLRQLNLS---------------RNYIRSVPSSCSNMRNLQYLNLKNNRLQ-SLPASI 110 (1081)
T ss_pred eEEeeccccccccCCchhhhHHHHhhcccc---------------hhhHhhCchhhhhhhcchhheeccchhh-cCchhH
Confidence 789999999999999999988888877642 2234445555555666666666554443 345556
Q ss_pred CCCCCCcEEEeeCCCCCccchhhHhhhhhhhhhhhc-----------------------------------------cCC
Q 002315 108 LPFCRLKVLELRGCDLSTSAAKGLLELRHTLEKIIC-----------------------------------------HNS 146 (937)
Q Consensus 108 s~L~~L~~LdLS~N~Ls~~lp~~L~~L~~Ll~LlL~-----------------------------------------~N~ 146 (937)
..+.+|++|+++.|.+.. +|..+..+..+.++..+ +|.
T Consensus 111 ~~lknl~~LdlS~N~f~~-~Pl~i~~lt~~~~~~~s~N~~~~~lg~~~ik~~~l~~n~l~~~~~~~i~~l~~~ldLr~N~ 189 (1081)
T KOG0618|consen 111 SELKNLQYLDLSFNHFGP-IPLVIEVLTAEEELAASNNEKIQRLGQTSIKKLDLRLNVLGGSFLIDIYNLTHQLDLRYNE 189 (1081)
T ss_pred HhhhcccccccchhccCC-CchhHHhhhHHHHHhhhcchhhhhhccccchhhhhhhhhcccchhcchhhhheeeecccch
Confidence 666666666666665543 34333333333333333 333
Q ss_pred Ccccchhccc----------c--------------------hhcccCCCCCCCccEEEccCCcCccchhhcCCCCCCcEE
Q 002315 147 TNALRHVFAS----------R--------------------IVEIKDSPQWNRLSFVSCSCNRLVIMDESLQLLPAVETL 196 (937)
Q Consensus 147 L~~L~~l~~~----------~--------------------i~~l~~l~~l~~L~~L~Ls~N~Ls~LP~sL~~L~~L~~L 196 (937)
+..+.--... . +..+...+...+|++++++.|+++.+|.++..+.+|+.|
T Consensus 190 ~~~~dls~~~~l~~l~c~rn~ls~l~~~g~~l~~L~a~~n~l~~~~~~p~p~nl~~~dis~n~l~~lp~wi~~~~nle~l 269 (1081)
T KOG0618|consen 190 MEVLDLSNLANLEVLHCERNQLSELEISGPSLTALYADHNPLTTLDVHPVPLNLQYLDISHNNLSNLPEWIGACANLEAL 269 (1081)
T ss_pred hhhhhhhhccchhhhhhhhcccceEEecCcchheeeeccCcceeeccccccccceeeecchhhhhcchHHHHhcccceEe
Confidence 2200000000 0 000001122357888889999999999888899999999
Q ss_pred ECCCCCCCCCc------------------------CcCCCCCCCEEECCCCCCCCcccccc-------------------
Q 002315 197 DLSRNKFAKVD------------------------NLRKCVNLKHLDLGFNNLRSIAAFSE------------------- 233 (937)
Q Consensus 197 dLs~N~L~~l~------------------------~L~~L~~L~~LdLS~N~Lt~L~~l~~------------------- 233 (937)
.+.+|.|..++ .+.+++.|++|+|..|+|..+|..+.
T Consensus 270 ~~n~N~l~~lp~ri~~~~~L~~l~~~~nel~yip~~le~~~sL~tLdL~~N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~ 349 (1081)
T KOG0618|consen 270 NANHNRLVALPLRISRITSLVSLSAAYNELEYIPPFLEGLKSLRTLDLQSNNLPSLPDNFLAVLNASLNTLNVSSNKLST 349 (1081)
T ss_pred cccchhHHhhHHHHhhhhhHHHHHhhhhhhhhCCCcccccceeeeeeehhccccccchHHHhhhhHHHHHHhhhhccccc
Confidence 99888876531 23457788899999888877654211
Q ss_pred -------cccccceecccCccccc--cccCCCCCCCCEEEccCCCCCCCchhhhhcCCCCCCEEEecCCCCCCCc
Q 002315 234 -------VSCHIVKLVLRNNALTT--LRGIENLKSLEGLDISYNIISTFSELEFLASLPYLLNLWLEGNPLCCSR 299 (937)
Q Consensus 234 -------~l~sL~~L~Ls~N~Lt~--Lp~L~~L~sL~~LdLS~N~Ls~l~~l~~L~~L~sL~~L~Ls~NpLt~~~ 299 (937)
.++.|+.|.|.+|.++. +|.+.++++|+.|+|++|+|..+|+ ..+.++..|+.|+|+||.++..+
T Consensus 350 lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~fpa-s~~~kle~LeeL~LSGNkL~~Lp 423 (1081)
T KOG0618|consen 350 LPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLNSFPA-SKLRKLEELEELNLSGNKLTTLP 423 (1081)
T ss_pred cccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeecccccccCCH-HHHhchHHhHHHhcccchhhhhh
Confidence 12457778888888877 5788889999999999999999987 67889999999999999987654
No 17
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.55 E-value=2.2e-15 Score=154.22 Aligned_cols=157 Identities=29% Similarity=0.426 Sum_probs=68.2
Q ss_pred CCcCccchhhcCCCCCCcEEECCCCCCCCCcCcC-CCCCCCEEECCCCCCCCcccccccccccceecccCccccccc-cC
Q 002315 177 CNRLVIMDESLQLLPAVETLDLSRNKFAKVDNLR-KCVNLKHLDLGFNNLRSIAAFSEVSCHIVKLVLRNNALTTLR-GI 254 (937)
Q Consensus 177 ~N~Ls~LP~sL~~L~~L~~LdLs~N~L~~l~~L~-~L~~L~~LdLS~N~Lt~L~~l~~~l~sL~~L~Ls~N~Lt~Lp-~L 254 (937)
.+.|..+|. +.+...+++|+|.+|.|+.++.+. .+.+|+.|+|++|.|+.++.+. .++.|+.|++++|+|+.+. .+
T Consensus 6 ~~~i~~~~~-~~n~~~~~~L~L~~n~I~~Ie~L~~~l~~L~~L~Ls~N~I~~l~~l~-~L~~L~~L~L~~N~I~~i~~~l 83 (175)
T PF14580_consen 6 ANMIEQIAQ-YNNPVKLRELNLRGNQISTIENLGATLDKLEVLDLSNNQITKLEGLP-GLPRLKTLDLSNNRISSISEGL 83 (175)
T ss_dssp -------------------------------S--TT-TT--EEE-TTS--S--TT-----TT--EEE--SS---S-CHHH
T ss_pred ccccccccc-cccccccccccccccccccccchhhhhcCCCEEECCCCCCccccCcc-ChhhhhhcccCCCCCCccccch
Confidence 344444432 334456788888888888887776 5778888888888888877644 3578888888888888874 44
Q ss_pred -CCCCCCCEEEccCCCCCCCchhhhhcCCCCCCEEEecCCCCCCCcchhhhHhhhcCCCceeccCCccCChhhHHHHHHH
Q 002315 255 -ENLKSLEGLDISYNIISTFSELEFLASLPYLLNLWLEGNPLCCSRWYRAQVFSYFAHPAKLKVDGKEISTRELWERQLI 333 (937)
Q Consensus 255 -~~L~sL~~LdLS~N~Ls~l~~l~~L~~L~sL~~L~Ls~NpLt~~~~~r~~~~~~l~~L~~L~LdgN~Is~~e~~~~~~l 333 (937)
..+++|+.|+|++|+|..+..+..+..+++|+.|+|.+||++..+.||..++..+|.|+ .||+.+|+..|+..+..+
T Consensus 84 ~~~lp~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk--~LD~~~V~~~ER~~A~~~ 161 (175)
T PF14580_consen 84 DKNLPNLQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLK--VLDGQDVTEEERQEAEKL 161 (175)
T ss_dssp HHH-TT--EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-S--EETTEETTS-B-------
T ss_pred HHhCCcCCEEECcCCcCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhh--eeCCEEccHHHhcccccc
Confidence 36899999999999999988888899999999999999999999999999998887666 678999999999999888
Q ss_pred HHhh
Q 002315 334 IARR 337 (937)
Q Consensus 334 ~~~~ 337 (937)
|..+
T Consensus 162 f~~~ 165 (175)
T PF14580_consen 162 FKGK 165 (175)
T ss_dssp ----
T ss_pred cccc
Confidence 7765
No 18
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.55 E-value=3.9e-14 Score=182.18 Aligned_cols=243 Identities=20% Similarity=0.156 Sum_probs=138.0
Q ss_pred cccccCCCCCcchHHHHHhcCCCCCcEEEccCCCCCCCCCCCCCCCCCCcEEEeeCCCCCccchhhHhhhhhhhhhhhcc
Q 002315 65 AYVSDLGDHRALEQLRRILKLLTSLKVVSALPPPARDPTPLSLLPFCRLKVLELRGCDLSTSAAKGLLELRHTLEKIICH 144 (937)
Q Consensus 65 l~vLdLs~n~~le~Lp~~L~~L~~Lk~LdLs~N~Is~~iP~sLs~L~~L~~LdLS~N~Ls~~lp~~L~~L~~Ll~LlL~~ 144 (937)
+..+++.++. +..+|..+..+++|+.|+|+++.....+|. ++.+++|+.|+|++|.....+|..+..+++|..+.+.+
T Consensus 613 L~~L~L~~s~-l~~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~-ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~ 690 (1153)
T PLN03210 613 LVKLQMQGSK-LEKLWDGVHSLTGLRNIDLRGSKNLKEIPD-LSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSR 690 (1153)
T ss_pred CcEEECcCcc-ccccccccccCCCCCEEECCCCCCcCcCCc-cccCCcccEEEecCCCCccccchhhhccCCCCEEeCCC
Confidence 3456666654 566777778888888888887665455553 77888888888888876667788888888888887776
Q ss_pred C-CCcccchhc---------ccchhcccCCC-CCCCccEEEccCCcCccchhhcCCCCCCcEEECCCCCCCCC-------
Q 002315 145 N-STNALRHVF---------ASRIVEIKDSP-QWNRLSFVSCSCNRLVIMDESLQLLPAVETLDLSRNKFAKV------- 206 (937)
Q Consensus 145 N-~L~~L~~l~---------~~~i~~l~~l~-~l~~L~~L~Ls~N~Ls~LP~sL~~L~~L~~LdLs~N~L~~l------- 206 (937)
+ .+..++... ......+..++ ...+|+.|++++|.+..+|..+ .+++|++|.+..+....+
T Consensus 691 c~~L~~Lp~~i~l~sL~~L~Lsgc~~L~~~p~~~~nL~~L~L~~n~i~~lP~~~-~l~~L~~L~l~~~~~~~l~~~~~~l 769 (1153)
T PLN03210 691 CENLEILPTGINLKSLYRLNLSGCSRLKSFPDISTNISWLDLDETAIEEFPSNL-RLENLDELILCEMKSEKLWERVQPL 769 (1153)
T ss_pred CCCcCccCCcCCCCCCCEEeCCCCCCccccccccCCcCeeecCCCccccccccc-cccccccccccccchhhcccccccc
Confidence 4 344443221 00000000000 1235566666666666555433 344444444443221110
Q ss_pred c--CcCCCCCCCEEECCCCC-CCCcccccccccccceecccCc-cccccccCCCCCCCCEEEccCCC-CCCCchhhhhcC
Q 002315 207 D--NLRKCVNLKHLDLGFNN-LRSIAAFSEVSCHIVKLVLRNN-ALTTLRGIENLKSLEGLDISYNI-ISTFSELEFLAS 281 (937)
Q Consensus 207 ~--~L~~L~~L~~LdLS~N~-Lt~L~~l~~~l~sL~~L~Ls~N-~Lt~Lp~L~~L~sL~~LdLS~N~-Ls~l~~l~~L~~ 281 (937)
. ....+++|+.|+|++|. +..+|.....+++|+.|+|++| .++.+|....+++|+.|+|++|. +..+|. .
T Consensus 770 ~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~~L~sL~~L~Ls~c~~L~~~p~-----~ 844 (1153)
T PLN03210 770 TPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGINLESLESLDLSGCSRLRTFPD-----I 844 (1153)
T ss_pred chhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCCCccccCEEECCCCCccccccc-----c
Confidence 0 01122456666666663 3445555555667777777665 45556543456667777776643 333331 1
Q ss_pred CCCCCEEEecCCCCCCCcchhhhHhhhcCCCceeccCC
Q 002315 282 LPYLLNLWLEGNPLCCSRWYRAQVFSYFAHPAKLKVDG 319 (937)
Q Consensus 282 L~sL~~L~Ls~NpLt~~~~~r~~~~~~l~~L~~L~Ldg 319 (937)
.++|+.|+|++|.+...| ..+..++.|+.|+|++
T Consensus 845 ~~nL~~L~Ls~n~i~~iP----~si~~l~~L~~L~L~~ 878 (1153)
T PLN03210 845 STNISDLNLSRTGIEEVP----WWIEKFSNLSFLDMNG 878 (1153)
T ss_pred ccccCEeECCCCCCccCh----HHHhcCCCCCEEECCC
Confidence 345666666666665443 2344566666666665
No 19
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.54 E-value=9.7e-16 Score=169.06 Aligned_cols=229 Identities=19% Similarity=0.183 Sum_probs=162.5
Q ss_pred CCCCCcchHHH-HHhcCCCCCcEEEccCCCCCCCCCCCCCCCCCCcEEEeeC-CCCCccchhhHhhhhhhhhhhhccCCC
Q 002315 70 LGDHRALEQLR-RILKLLTSLKVVSALPPPARDPTPLSLLPFCRLKVLELRG-CDLSTSAAKGLLELRHTLEKIICHNST 147 (937)
Q Consensus 70 Ls~n~~le~Lp-~~L~~L~~Lk~LdLs~N~Is~~iP~sLs~L~~L~~LdLS~-N~Ls~~lp~~L~~L~~Ll~LlL~~N~L 147 (937)
|..|. +..|| ..|+.+++|+.|+|++|.|+.+.|.+|..+++|..|-+.+ |+|+......|.+|..++.+++.-|.+
T Consensus 74 LdqN~-I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLllNan~i 152 (498)
T KOG4237|consen 74 LDQNQ-ISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLLNANHI 152 (498)
T ss_pred eccCC-cccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhcChhhh
Confidence 33343 33444 5888899999999999999888888998888888776655 888876667788888877777776665
Q ss_pred cccchhcc-------------cchhccc--CCCCCCCccEEEccCCcCc---cc----------hhhcCCCCCCcEEECC
Q 002315 148 NALRHVFA-------------SRIVEIK--DSPQWNRLSFVSCSCNRLV---IM----------DESLQLLPAVETLDLS 199 (937)
Q Consensus 148 ~~L~~l~~-------------~~i~~l~--~l~~l~~L~~L~Ls~N~Ls---~L----------P~sL~~L~~L~~LdLs 199 (937)
.-++.-.+ +.+..+. .+..+..++.+.+..|.+- .+ |..+++..-..-..+.
T Consensus 153 ~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsgarc~~p~rl~ 232 (498)
T KOG4237|consen 153 NCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSGARCVSPYRLY 232 (498)
T ss_pred cchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccccchhhhHHhhchhhcccceecchHHHH
Confidence 54433222 2222222 1345667777877777622 11 1122222211111111
Q ss_pred CC--------------------------CCCCCc--CcCCCCCCCEEECCCCCCCCccc-ccccccccceecccCccccc
Q 002315 200 RN--------------------------KFAKVD--NLRKCVNLKHLDLGFNNLRSIAA-FSEVSCHIVKLVLRNNALTT 250 (937)
Q Consensus 200 ~N--------------------------~L~~l~--~L~~L~~L~~LdLS~N~Lt~L~~-l~~~l~sL~~L~Ls~N~Lt~ 250 (937)
++ .....| .|.+|++|+.|+|++|+|+.|.. .+..+..|+.|.|..|+|..
T Consensus 233 ~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~N~l~~ 312 (498)
T KOG4237|consen 233 YKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQELYLTRNKLEF 312 (498)
T ss_pred HHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhcchhhhhhhhcCcchHHH
Confidence 11 111112 58899999999999999999875 55677899999999999999
Q ss_pred cc--cCCCCCCCCEEEccCCCCCCCchhhhhcCCCCCCEEEecCCCCCCCcc
Q 002315 251 LR--GIENLKSLEGLDISYNIISTFSELEFLASLPYLLNLWLEGNPLCCSRW 300 (937)
Q Consensus 251 Lp--~L~~L~sL~~LdLS~N~Ls~l~~l~~L~~L~sL~~L~Ls~NpLt~~~~ 300 (937)
+. .|.++..|+.|+|.+|+|+.+.+ .+|..+..|..|+|-.||+.|.|.
T Consensus 313 v~~~~f~~ls~L~tL~L~~N~it~~~~-~aF~~~~~l~~l~l~~Np~~CnC~ 363 (498)
T KOG4237|consen 313 VSSGMFQGLSGLKTLSLYDNQITTVAP-GAFQTLFSLSTLNLLSNPFNCNCR 363 (498)
T ss_pred HHHHhhhccccceeeeecCCeeEEEec-ccccccceeeeeehccCcccCccc
Confidence 85 78999999999999999998865 668889999999999999999973
No 20
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.53 E-value=7.3e-14 Score=179.62 Aligned_cols=285 Identities=16% Similarity=0.157 Sum_probs=160.8
Q ss_pred hcCCcEEEecCCCccchHhhhhhcccchhccCC-CCC--------cccccccccCCCCCcchHHHHHhcCCCCCcEEEcc
Q 002315 25 IEGSIVLKLNPAGLHYVQSRLEALRELERLLAG-APL--------DYLRAYVSDLGDHRALEQLRRILKLLTSLKVVSAL 95 (937)
Q Consensus 25 L~~l~~L~L~~~~L~~Lp~~L~~L~~Le~L~~g-~~L--------~~L~l~vLdLs~n~~le~Lp~~L~~L~~Lk~LdLs 95 (937)
...+++|.+....+..+|..+. ..+|..|... ..+ ..-.+..++|+++..+..+|. +..+++|+.|+|.
T Consensus 588 p~~Lr~L~~~~~~l~~lP~~f~-~~~L~~L~L~~s~l~~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~-ls~l~~Le~L~L~ 665 (1153)
T PLN03210 588 PPKLRLLRWDKYPLRCMPSNFR-PENLVKLQMQGSKLEKLWDGVHSLTGLRNIDLRGSKNLKEIPD-LSMATNLETLKLS 665 (1153)
T ss_pred CcccEEEEecCCCCCCCCCcCC-ccCCcEEECcCccccccccccccCCCCCEEECCCCCCcCcCCc-cccCCcccEEEec
Confidence 3456666666666666665441 2223222221 001 111233456666555565654 5666777777776
Q ss_pred CCCCCCCCCCCCCCCCCCcEEEeeCCCCCccchhhHhhhhhhhhhhhccCC-Ccccchhc---------ccchhcccCCC
Q 002315 96 PPPARDPTPLSLLPFCRLKVLELRGCDLSTSAAKGLLELRHTLEKIICHNS-TNALRHVF---------ASRIVEIKDSP 165 (937)
Q Consensus 96 ~N~Is~~iP~sLs~L~~L~~LdLS~N~Ls~~lp~~L~~L~~Ll~LlL~~N~-L~~L~~l~---------~~~i~~l~~l~ 165 (937)
+|.....+|..+..+++|+.|+|++|.....+|..+ ++++|..+.+.++. +..++... ...+..++...
T Consensus 666 ~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-~l~sL~~L~Lsgc~~L~~~p~~~~nL~~L~L~~n~i~~lP~~~ 744 (1153)
T PLN03210 666 DCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI-NLKSLYRLNLSGCSRLKSFPDISTNISWLDLDETAIEEFPSNL 744 (1153)
T ss_pred CCCCccccchhhhccCCCCEEeCCCCCCcCccCCcC-CCCCCCEEeCCCCCCccccccccCCcCeeecCCCccccccccc
Confidence 665555666666667777777776654444455443 45555555554442 11111110 11122222222
Q ss_pred CCCCccEEEccCCcCccch--------hhcCCCCCCcEEECCCCC-CCCCc-CcCCCCCCCEEECCCC-CCCCccccccc
Q 002315 166 QWNRLSFVSCSCNRLVIMD--------ESLQLLPAVETLDLSRNK-FAKVD-NLRKCVNLKHLDLGFN-NLRSIAAFSEV 234 (937)
Q Consensus 166 ~l~~L~~L~Ls~N~Ls~LP--------~sL~~L~~L~~LdLs~N~-L~~l~-~L~~L~~L~~LdLS~N-~Lt~L~~l~~~ 234 (937)
.+++|+.|.+.++....++ ..+..+++|+.|+|++|. +..+| .+.++++|+.|+|++| .+..+|... .
T Consensus 745 ~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~ 823 (1153)
T PLN03210 745 RLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI-N 823 (1153)
T ss_pred cccccccccccccchhhccccccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC-C
Confidence 4566777777664322221 122334678888888774 33454 5777888888888876 466666544 4
Q ss_pred ccccceecccCc-cccccccCCCCCCCCEEEccCCCCCCCchhhhhcCCCCCCEEEecCC-CCCCCcchhhhHhhhcCCC
Q 002315 235 SCHIVKLVLRNN-ALTTLRGIENLKSLEGLDISYNIISTFSELEFLASLPYLLNLWLEGN-PLCCSRWYRAQVFSYFAHP 312 (937)
Q Consensus 235 l~sL~~L~Ls~N-~Lt~Lp~L~~L~sL~~LdLS~N~Ls~l~~l~~L~~L~sL~~L~Ls~N-pLt~~~~~r~~~~~~l~~L 312 (937)
+++|+.|+|++| .+..+|.+ .++|+.|+|++|.|..+| ..+..+++|+.|+|.+| .+...+ ..+..++.|
T Consensus 824 L~sL~~L~Ls~c~~L~~~p~~--~~nL~~L~Ls~n~i~~iP--~si~~l~~L~~L~L~~C~~L~~l~----~~~~~L~~L 895 (1153)
T PLN03210 824 LESLESLDLSGCSRLRTFPDI--STNISDLNLSRTGIEEVP--WWIEKFSNLSFLDMNGCNNLQRVS----LNISKLKHL 895 (1153)
T ss_pred ccccCEEECCCCCcccccccc--ccccCEeECCCCCCccCh--HHHhcCCCCCEEECCCCCCcCccC----cccccccCC
Confidence 577888888876 44445533 357888888888888776 46778888888888873 454333 123345667
Q ss_pred ceeccCCcc
Q 002315 313 AKLKVDGKE 321 (937)
Q Consensus 313 ~~L~LdgN~ 321 (937)
+.+.+.++.
T Consensus 896 ~~L~l~~C~ 904 (1153)
T PLN03210 896 ETVDFSDCG 904 (1153)
T ss_pred CeeecCCCc
Confidence 777766653
No 21
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.52 E-value=2.6e-14 Score=174.87 Aligned_cols=219 Identities=18% Similarity=0.165 Sum_probs=141.6
Q ss_pred ccCCCCCcchHHHHHhcCCCCCcEEEccCCCCCCCCCCCCCCCCCCcEEEeeCCCCCccchhhHhhhhhhhhhhhccCCC
Q 002315 68 SDLGDHRALEQLRRILKLLTSLKVVSALPPPARDPTPLSLLPFCRLKVLELRGCDLSTSAAKGLLELRHTLEKIICHNST 147 (937)
Q Consensus 68 LdLs~n~~le~Lp~~L~~L~~Lk~LdLs~N~Is~~iP~sLs~L~~L~~LdLS~N~Ls~~lp~~L~~L~~Ll~LlL~~N~L 147 (937)
++++++. +..+|..+ .++|+.|+|++|.|+. +|..+. ++|+.|+|++|.|+. +|..+. ..+..+.+.+|++
T Consensus 183 L~L~~~~-LtsLP~~I--p~~L~~L~Ls~N~Lts-LP~~l~--~nL~~L~Ls~N~Lts-LP~~l~--~~L~~L~Ls~N~L 253 (754)
T PRK15370 183 LRLKILG-LTTIPACI--PEQITTLILDNNELKS-LPENLQ--GNIKTLYANSNQLTS-IPATLP--DTIQEMELSINRI 253 (754)
T ss_pred EEeCCCC-cCcCCccc--ccCCcEEEecCCCCCc-CChhhc--cCCCEEECCCCcccc-CChhhh--ccccEEECcCCcc
Confidence 4444432 33455433 2467777887777774 344443 577888888887765 454443 2456666777766
Q ss_pred cccchhcccchhcccCCCCCCCccEEEccCCcCccchhhcCCCCCCcEEECCCCCCCCCcCcCCCCCCCEEECCCCCCCC
Q 002315 148 NALRHVFASRIVEIKDSPQWNRLSFVSCSCNRLVIMDESLQLLPAVETLDLSRNKFAKVDNLRKCVNLKHLDLGFNNLRS 227 (937)
Q Consensus 148 ~~L~~l~~~~i~~l~~l~~l~~L~~L~Ls~N~Ls~LP~sL~~L~~L~~LdLs~N~L~~l~~L~~L~~L~~LdLS~N~Lt~ 227 (937)
..++..++ ..|+.|++++|+|+.+|..+. ++|+.|+|++|+|+.++.- -.++|+.|+|++|.++.
T Consensus 254 ~~LP~~l~------------s~L~~L~Ls~N~L~~LP~~l~--~sL~~L~Ls~N~Lt~LP~~-lp~sL~~L~Ls~N~Lt~ 318 (754)
T PRK15370 254 TELPERLP------------SALQSLDLFHNKISCLPENLP--EELRYLSVYDNSIRTLPAH-LPSGITHLNVQSNSLTA 318 (754)
T ss_pred CcCChhHh------------CCCCEEECcCCccCccccccC--CCCcEEECCCCccccCccc-chhhHHHHHhcCCcccc
Confidence 66554321 257788888888887776553 4788888888888776521 12467778888888877
Q ss_pred cccccccccccceecccCccccccc-cCCCCCCCCEEEccCCCCCCCchhhhhcCCCCCCEEEecCCCCCCCcchhhhHh
Q 002315 228 IAAFSEVSCHIVKLVLRNNALTTLR-GIENLKSLEGLDISYNIISTFSELEFLASLPYLLNLWLEGNPLCCSRWYRAQVF 306 (937)
Q Consensus 228 L~~l~~~l~sL~~L~Ls~N~Lt~Lp-~L~~L~sL~~LdLS~N~Ls~l~~l~~L~~L~sL~~L~Ls~NpLt~~~~~r~~~~ 306 (937)
+|... .++|+.|++++|.|+.+| .+ .++|+.|+|++|+|+.+|. .+ .++|+.|+|++|.++..+.. .
T Consensus 319 LP~~l--~~sL~~L~Ls~N~Lt~LP~~l--~~sL~~L~Ls~N~L~~LP~--~l--p~~L~~LdLs~N~Lt~LP~~---l- 386 (754)
T PRK15370 319 LPETL--PPGLKTLEAGENALTSLPASL--PPELQVLDVSKNQITVLPE--TL--PPTITTLDVSRNALTNLPEN---L- 386 (754)
T ss_pred CCccc--cccceeccccCCccccCChhh--cCcccEEECCCCCCCcCCh--hh--cCCcCEEECCCCcCCCCCHh---H-
Confidence 66432 257888888888888776 23 3678888888888887763 22 35788888888888755421 1
Q ss_pred hhcCCCceeccCCccCCh
Q 002315 307 SYFAHPAKLKVDGKEIST 324 (937)
Q Consensus 307 ~~l~~L~~L~LdgN~Is~ 324 (937)
...|+.|++.+|.+..
T Consensus 387 --~~sL~~LdLs~N~L~~ 402 (754)
T PRK15370 387 --PAALQIMQASRNNLVR 402 (754)
T ss_pred --HHHHHHHhhccCCccc
Confidence 1246777788887763
No 22
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.52 E-value=1.4e-15 Score=152.03 Aligned_cols=127 Identities=23% Similarity=0.321 Sum_probs=62.2
Q ss_pred ccEEEccCCcCccchhhcCCCCCCcEEECCCCCCCCCc-CcCCCCCCCEEECCCCCCCC--cccccccccccceecccCc
Q 002315 170 LSFVSCSCNRLVIMDESLQLLPAVETLDLSRNKFAKVD-NLRKCVNLKHLDLGFNNLRS--IAAFSEVSCHIVKLVLRNN 246 (937)
Q Consensus 170 L~~L~Ls~N~Ls~LP~sL~~L~~L~~LdLs~N~L~~l~-~L~~L~~L~~LdLS~N~Lt~--L~~l~~~l~sL~~L~Ls~N 246 (937)
|+.|++++|+|+.+|..+..++.|+.|+++-|++..+| .|+.++.|+.|+|++|++.. +|..++.+..|+-|.|++|
T Consensus 58 levln~~nnqie~lp~~issl~klr~lnvgmnrl~~lprgfgs~p~levldltynnl~e~~lpgnff~m~tlralyl~dn 137 (264)
T KOG0617|consen 58 LEVLNLSNNQIEELPTSISSLPKLRILNVGMNRLNILPRGFGSFPALEVLDLTYNNLNENSLPGNFFYMTTLRALYLGDN 137 (264)
T ss_pred hhhhhcccchhhhcChhhhhchhhhheecchhhhhcCccccCCCchhhhhhccccccccccCCcchhHHHHHHHHHhcCC
Confidence 34444444444444444444444444444444444433 44444444444444444432 3443444445555555555
Q ss_pred cccccc-cCCCCCCCCEEEccCCCCCCCchhhhhcCCCCCCEEEecCCCCCCC
Q 002315 247 ALTTLR-GIENLKSLEGLDISYNIISTFSELEFLASLPYLLNLWLEGNPLCCS 298 (937)
Q Consensus 247 ~Lt~Lp-~L~~L~sL~~LdLS~N~Ls~l~~l~~L~~L~sL~~L~Ls~NpLt~~ 298 (937)
.+.-+| .++++++|+.|.+..|.+-.+| ..++.+.+|+.|.+.||.++-.
T Consensus 138 dfe~lp~dvg~lt~lqil~lrdndll~lp--keig~lt~lrelhiqgnrl~vl 188 (264)
T KOG0617|consen 138 DFEILPPDVGKLTNLQILSLRDNDLLSLP--KEIGDLTRLRELHIQGNRLTVL 188 (264)
T ss_pred CcccCChhhhhhcceeEEeeccCchhhCc--HHHHHHHHHHHHhcccceeeec
Confidence 555543 4555555555555555555554 3455555555555555555433
No 23
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.48 E-value=4e-14 Score=155.28 Aligned_cols=56 Identities=21% Similarity=0.150 Sum_probs=27.6
Q ss_pred HHHHHhcCCCCCcEEEccCCCCCC------CCCCCCCCCCCCcEEEeeCCCCCccchhhHhh
Q 002315 78 QLRRILKLLTSLKVVSALPPPARD------PTPLSLLPFCRLKVLELRGCDLSTSAAKGLLE 133 (937)
Q Consensus 78 ~Lp~~L~~L~~Lk~LdLs~N~Is~------~iP~sLs~L~~L~~LdLS~N~Ls~~lp~~L~~ 133 (937)
.++..+...++|+.|+++++.+.. .++..+..+++|+.|+|++|.+....+..+..
T Consensus 42 ~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~ 103 (319)
T cd00116 42 ALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGVLES 103 (319)
T ss_pred HHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHHHHHHH
Confidence 344455555556666655555431 11233444556666666666555433433333
No 24
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.47 E-value=5.3e-14 Score=154.27 Aligned_cols=246 Identities=24% Similarity=0.218 Sum_probs=175.9
Q ss_pred HHHHHhcCCCCCcEEEccCCCCCCC----CCCCCCCCCCCcEEEeeCCCCCc------cchhhHhhhhhhhhhhhccCCC
Q 002315 78 QLRRILKLLTSLKVVSALPPPARDP----TPLSLLPFCRLKVLELRGCDLST------SAAKGLLELRHTLEKIICHNST 147 (937)
Q Consensus 78 ~Lp~~L~~L~~Lk~LdLs~N~Is~~----iP~sLs~L~~L~~LdLS~N~Ls~------~lp~~L~~L~~Ll~LlL~~N~L 147 (937)
.....+..+.+|+.|+|.++.++.. ++..+...++|+.|+++++.+.+ .++..+..++++..+.+.+|.+
T Consensus 14 ~~~~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~ 93 (319)
T cd00116 14 RATELLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNAL 93 (319)
T ss_pred chHHHHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCC
Confidence 3445566677899999999998542 45567778899999999998872 3445677777888888988876
Q ss_pred cccchhcccchhcccCCCCCCCccEEEccCCcCc-----cchhhcCCC-CCCcEEECCCCCCCCC------cCcCCCCCC
Q 002315 148 NALRHVFASRIVEIKDSPQWNRLSFVSCSCNRLV-----IMDESLQLL-PAVETLDLSRNKFAKV------DNLRKCVNL 215 (937)
Q Consensus 148 ~~L~~l~~~~i~~l~~l~~l~~L~~L~Ls~N~Ls-----~LP~sL~~L-~~L~~LdLs~N~L~~l------~~L~~L~~L 215 (937)
....... +..+. .. ++|+.|++++|.+. .+...+..+ ++|+.|++++|.++.. ..+..+++|
T Consensus 94 ~~~~~~~---~~~l~--~~-~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L 167 (319)
T cd00116 94 GPDGCGV---LESLL--RS-SSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDL 167 (319)
T ss_pred ChhHHHH---HHHHh--cc-CcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCc
Confidence 5321111 11111 12 56999999999987 334466677 8999999999999842 256677899
Q ss_pred CEEECCCCCCCC-----cccccccccccceecccCcccccc------ccCCCCCCCCEEEccCCCCCCCchhhhhc----
Q 002315 216 KHLDLGFNNLRS-----IAAFSEVSCHIVKLVLRNNALTTL------RGIENLKSLEGLDISYNIISTFSELEFLA---- 280 (937)
Q Consensus 216 ~~LdLS~N~Lt~-----L~~l~~~l~sL~~L~Ls~N~Lt~L------p~L~~L~sL~~LdLS~N~Ls~l~~l~~L~---- 280 (937)
+.|+|++|.++. ++.....+++|+.|+|++|.++.. ..+..+++|++|++++|.+++........
T Consensus 168 ~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~ 247 (319)
T cd00116 168 KELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAALASALLS 247 (319)
T ss_pred CEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHHHHHHHHHHhc
Confidence 999999999884 122222346999999999998753 25677899999999999998643222112
Q ss_pred CCCCCCEEEecCCCCCCCcc-hhhhHhhhcCCCceeccCCccCChhhHHH
Q 002315 281 SLPYLLNLWLEGNPLCCSRW-YRAQVFSYFAHPAKLKVDGKEISTRELWE 329 (937)
Q Consensus 281 ~L~sL~~L~Ls~NpLt~~~~-~r~~~~~~l~~L~~L~LdgN~Is~~e~~~ 329 (937)
..+.|+.|++++|.++.... .-...+..++.|+.+++++|.++......
T Consensus 248 ~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~~~~ 297 (319)
T cd00116 248 PNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEEGAQL 297 (319)
T ss_pred cCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcHHHHHH
Confidence 24799999999999974321 11233455678999999999999765333
No 25
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.36 E-value=2.5e-14 Score=143.18 Aligned_cols=161 Identities=19% Similarity=0.235 Sum_probs=142.7
Q ss_pred cccCCCCCCCccEEEccCCcCccchhhcCCCCCCcEEECCCCCCCCCc-CcCCCCCCCEEECCCCCCCCccccccccccc
Q 002315 160 EIKDSPQWNRLSFVSCSCNRLVIMDESLQLLPAVETLDLSRNKFAKVD-NLRKCVNLKHLDLGFNNLRSIAAFSEVSCHI 238 (937)
Q Consensus 160 ~l~~l~~l~~L~~L~Ls~N~Ls~LP~sL~~L~~L~~LdLs~N~L~~l~-~L~~L~~L~~LdLS~N~Lt~L~~l~~~l~sL 238 (937)
+++.+..+..++.|.|++|+++.+|+.+..+.+|+.|++.+|+|+.+| .++.+++|+.|+++-|++..+|..++.+|.|
T Consensus 25 ~~~gLf~~s~ITrLtLSHNKl~~vppnia~l~nlevln~~nnqie~lp~~issl~klr~lnvgmnrl~~lprgfgs~p~l 104 (264)
T KOG0617|consen 25 ELPGLFNMSNITRLTLSHNKLTVVPPNIAELKNLEVLNLSNNQIEELPTSISSLPKLRILNVGMNRLNILPRGFGSFPAL 104 (264)
T ss_pred hcccccchhhhhhhhcccCceeecCCcHHHhhhhhhhhcccchhhhcChhhhhchhhhheecchhhhhcCccccCCCchh
Confidence 344445677889999999999999999999999999999999999986 8999999999999999999999988899999
Q ss_pred ceecccCccccc--cc-cCCCCCCCCEEEccCCCCCCCchhhhhcCCCCCCEEEecCCCCCCCcchhhhHhhhcCCCcee
Q 002315 239 VKLVLRNNALTT--LR-GIENLKSLEGLDISYNIISTFSELEFLASLPYLLNLWLEGNPLCCSRWYRAQVFSYFAHPAKL 315 (937)
Q Consensus 239 ~~L~Ls~N~Lt~--Lp-~L~~L~sL~~LdLS~N~Ls~l~~l~~L~~L~sL~~L~Ls~NpLt~~~~~r~~~~~~l~~L~~L 315 (937)
+.|+|..|++.. +| .|..++.|+-|+|++|.+.-+| ..++.+++|+.|.+..|.+...+ .-+..+..|+.|
T Consensus 105 evldltynnl~e~~lpgnff~m~tlralyl~dndfe~lp--~dvg~lt~lqil~lrdndll~lp----keig~lt~lrel 178 (264)
T KOG0617|consen 105 EVLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFEILP--PDVGKLTNLQILSLRDNDLLSLP----KEIGDLTRLREL 178 (264)
T ss_pred hhhhccccccccccCCcchhHHHHHHHHHhcCCCcccCC--hhhhhhcceeEEeeccCchhhCc----HHHHHHHHHHHH
Confidence 999999999987 56 7788899999999999999988 56899999999999999997665 456677788999
Q ss_pred ccCCccCChhh
Q 002315 316 KVDGKEISTRE 326 (937)
Q Consensus 316 ~LdgN~Is~~e 326 (937)
.+.||.++...
T Consensus 179 hiqgnrl~vlp 189 (264)
T KOG0617|consen 179 HIQGNRLTVLP 189 (264)
T ss_pred hcccceeeecC
Confidence 99999887543
No 26
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.32 E-value=6.4e-13 Score=148.74 Aligned_cols=252 Identities=18% Similarity=0.127 Sum_probs=184.6
Q ss_pred hHHHHHhcCCCCCcEEEccCCCCCCCCC-CCCCCCCCCcEEEeeCCCCCc--cchhhHhhhhhhhhhhhccCCCcccchh
Q 002315 77 EQLRRILKLLTSLKVVSALPPPARDPTP-LSLLPFCRLKVLELRGCDLST--SAAKGLLELRHTLEKIICHNSTNALRHV 153 (937)
Q Consensus 77 e~Lp~~L~~L~~Lk~LdLs~N~Is~~iP-~sLs~L~~L~~LdLS~N~Ls~--~lp~~L~~L~~Ll~LlL~~N~L~~L~~l 153 (937)
+++..--+++.+|+.+.|.+..+..... .....+++++.|||+.|-+.. .+..-...|++|..|.++.|.+.....-
T Consensus 111 Dki~akQsn~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s 190 (505)
T KOG3207|consen 111 DKIAAKQSNLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISS 190 (505)
T ss_pred HHHHHHhhhHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccc
Confidence 3444445667778888886666543211 245567888888888887765 2334556677777777777764433221
Q ss_pred cccchhcccCCCCCCCccEEEccCCcCc--cchhhcCCCCCCcEEECCCCCCCCC--cCcCCCCCCCEEECCCCCCCCcc
Q 002315 154 FASRIVEIKDSPQWNRLSFVSCSCNRLV--IMDESLQLLPAVETLDLSRNKFAKV--DNLRKCVNLKHLDLGFNNLRSIA 229 (937)
Q Consensus 154 ~~~~i~~l~~l~~l~~L~~L~Ls~N~Ls--~LP~sL~~L~~L~~LdLs~N~L~~l--~~L~~L~~L~~LdLS~N~Lt~L~ 229 (937)
. .. ..++.|+.|.|+.|.|+ .+...+..+|+|+.|+|..|....+ ....-+..|+.|+|++|.+-..+
T Consensus 191 ~---~~-----~~l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~ 262 (505)
T KOG3207|consen 191 N---TT-----LLLSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFD 262 (505)
T ss_pred c---ch-----hhhhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccc
Confidence 1 00 14568999999999998 5555677899999999999963333 24455678999999999998877
Q ss_pred --cccccccccceecccCcccccc--cc------CCCCCCCCEEEccCCCCCCCchhhhhcCCCCCCEEEecCCCCCCCc
Q 002315 230 --AFSEVSCHIVKLVLRNNALTTL--RG------IENLKSLEGLDISYNIISTFSELEFLASLPYLLNLWLEGNPLCCSR 299 (937)
Q Consensus 230 --~l~~~l~sL~~L~Ls~N~Lt~L--p~------L~~L~sL~~LdLS~N~Ls~l~~l~~L~~L~sL~~L~Ls~NpLt~~~ 299 (937)
.....++.|..|+++.+.|..+ |. ...+++|++|++..|+|..|+.+..+..+++|+.|.+..|++....
T Consensus 263 ~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n~ln~e~ 342 (505)
T KOG3207|consen 263 QGYKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITLNYLNKET 342 (505)
T ss_pred cccccccccchhhhhccccCcchhcCCCccchhhhcccccceeeecccCccccccccchhhccchhhhhhcccccccccc
Confidence 3455679999999999999986 22 3568999999999999999998888889999999999999998664
Q ss_pred chhhhHhhhcCCCceeccCCccCChhhHHHHHHHHHhh
Q 002315 300 WYRAQVFSYFAHPAKLKVDGKEISTRELWERQLIIARR 337 (937)
Q Consensus 300 ~~r~~~~~~l~~L~~L~LdgN~Is~~e~~~~~~l~~~~ 337 (937)
. ....+......+...|++..+...++..++..+.+.
T Consensus 343 ~-~a~~~VIAr~~~l~~LN~~di~p~eRR~AEl~~~~~ 379 (505)
T KOG3207|consen 343 D-TAKLLVIARISQLVKLNDVDISPNERRDAELYYLSK 379 (505)
T ss_pred c-ceeEEeeeehhhhhhhcccccChHHhhhhhhhHHhh
Confidence 3 223333445567778889999999988888876654
No 27
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.17 E-value=9.4e-13 Score=150.98 Aligned_cols=192 Identities=21% Similarity=0.273 Sum_probs=142.6
Q ss_pred ccccccCCCCCcchHHHHHhcCCCCCcEEEccCCCCCCCCCCCCCCCCCCcEEEeeCCCCCccchhhHhhhhhhhhhhhc
Q 002315 64 RAYVSDLGDHRALEQLRRILKLLTSLKVVSALPPPARDPTPLSLLPFCRLKVLELRGCDLSTSAAKGLLELRHTLEKIIC 143 (937)
Q Consensus 64 ~l~vLdLs~n~~le~Lp~~L~~L~~Lk~LdLs~N~Is~~iP~sLs~L~~L~~LdLS~N~Ls~~lp~~L~~L~~Ll~LlL~ 143 (937)
+...+|++.|++ ..+|..+..+..|..|.|.+|.|. .+|..+.++..|++|||+.|+++. +|..++.|+
T Consensus 76 dt~~aDlsrNR~-~elp~~~~~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS~-lp~~lC~lp-------- 144 (722)
T KOG0532|consen 76 DTVFADLSRNRF-SELPEEACAFVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLSH-LPDGLCDLP-------- 144 (722)
T ss_pred chhhhhcccccc-ccCchHHHHHHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhhc-CChhhhcCc--------
Confidence 344566666553 346666666777777777777765 446677777777777777777754 555554443
Q ss_pred cCCCcccchhcccchhcccCCCCCCCccEEEccCCcCccchhhcCCCCCCcEEECCCCCCCCCc-CcCCCCCCCEEECCC
Q 002315 144 HNSTNALRHVFASRIVEIKDSPQWNRLSFVSCSCNRLVIMDESLQLLPAVETLDLSRNKFAKVD-NLRKCVNLKHLDLGF 222 (937)
Q Consensus 144 ~N~L~~L~~l~~~~i~~l~~l~~l~~L~~L~Ls~N~Ls~LP~sL~~L~~L~~LdLs~N~L~~l~-~L~~L~~L~~LdLS~ 222 (937)
|+.|.+++|+++.+|..++.++.|..|+.+.|.|..++ .+..+.+|+.|++..
T Consensus 145 --------------------------Lkvli~sNNkl~~lp~~ig~~~tl~~ld~s~nei~slpsql~~l~slr~l~vrR 198 (722)
T KOG0532|consen 145 --------------------------LKVLIVSNNKLTSLPEEIGLLPTLAHLDVSKNEIQSLPSQLGYLTSLRDLNVRR 198 (722)
T ss_pred --------------------------ceeEEEecCccccCCcccccchhHHHhhhhhhhhhhchHHhhhHHHHHHHHHhh
Confidence 78899999999999999998889999999999998875 788889999999999
Q ss_pred CCCCCcccccccccccceecccCccccccc-cCCCCCCCCEEEccCCCCCCCchhhhh-cCCCCCCEEEecCC
Q 002315 223 NNLRSIAAFSEVSCHIVKLVLRNNALTTLR-GIENLKSLEGLDISYNIISTFSELEFL-ASLPYLLNLWLEGN 293 (937)
Q Consensus 223 N~Lt~L~~l~~~l~sL~~L~Ls~N~Lt~Lp-~L~~L~sL~~LdLS~N~Ls~l~~l~~L-~~L~sL~~L~Ls~N 293 (937)
|++..+|.....+ .|..||+++|+|..|| .|..|..|++|-|.+|.++.-|.--.. +...-.++|+...+
T Consensus 199 n~l~~lp~El~~L-pLi~lDfScNkis~iPv~fr~m~~Lq~l~LenNPLqSPPAqIC~kGkVHIFKyL~~qA~ 270 (722)
T KOG0532|consen 199 NHLEDLPEELCSL-PLIRLDFSCNKISYLPVDFRKMRHLQVLQLENNPLQSPPAQICEKGKVHIFKYLSTQAC 270 (722)
T ss_pred hhhhhCCHHHhCC-ceeeeecccCceeecchhhhhhhhheeeeeccCCCCCChHHHHhccceeeeeeecchhc
Confidence 9988888755543 5888999999999988 788899999999999999885532222 33344566666655
No 28
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.14 E-value=4.2e-11 Score=122.86 Aligned_cols=134 Identities=26% Similarity=0.371 Sum_probs=51.6
Q ss_pred ECCCCCCCCCcCcCCCCCCCEEECCCCCCCCcccccccccccceecccCccccccccCCCCCCCCEEEccCCCCCCCchh
Q 002315 197 DLSRNKFAKVDNLRKCVNLKHLDLGFNNLRSIAAFSEVSCHIVKLVLRNNALTTLRGIENLKSLEGLDISYNIISTFSEL 276 (937)
Q Consensus 197 dLs~N~L~~l~~L~~L~~L~~LdLS~N~Lt~L~~l~~~l~sL~~L~Ls~N~Lt~Lp~L~~L~sL~~LdLS~N~Ls~l~~l 276 (937)
.|..+.|..++.+.+...++.|+|.+|.|+.+..+...+.+|+.|+|++|.|+.++.+..++.|+.|+|++|+|+.+..
T Consensus 3 ~lt~~~i~~~~~~~n~~~~~~L~L~~n~I~~Ie~L~~~l~~L~~L~Ls~N~I~~l~~l~~L~~L~~L~L~~N~I~~i~~- 81 (175)
T PF14580_consen 3 RLTANMIEQIAQYNNPVKLRELNLRGNQISTIENLGATLDKLEVLDLSNNQITKLEGLPGLPRLKTLDLSNNRISSISE- 81 (175)
T ss_dssp ---------------------------------S--TT-TT--EEE-TTS--S--TT----TT--EEE--SS---S-CH-
T ss_pred cccccccccccccccccccccccccccccccccchhhhhcCCCEEECCCCCCccccCccChhhhhhcccCCCCCCcccc-
Confidence 3556777777788888899999999999999987765678999999999999999999999999999999999999863
Q ss_pred hhhcCCCCCCEEEecCCCCCCCcchhhhHhhhcCCCceeccCCccCChhhHHHHHHH
Q 002315 277 EFLASLPYLLNLWLEGNPLCCSRWYRAQVFSYFAHPAKLKVDGKEISTRELWERQLI 333 (937)
Q Consensus 277 ~~L~~L~sL~~L~Ls~NpLt~~~~~r~~~~~~l~~L~~L~LdgN~Is~~e~~~~~~l 333 (937)
.....+|+|+.|+|++|.|.....+ ..+..++.|+.|.|.+||++........++
T Consensus 82 ~l~~~lp~L~~L~L~~N~I~~l~~l--~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi 136 (175)
T PF14580_consen 82 GLDKNLPNLQELYLSNNKISDLNEL--EPLSSLPKLRVLSLEGNPVCEKKNYRLFVI 136 (175)
T ss_dssp HHHHH-TT--EEE-TTS---SCCCC--GGGGG-TT--EEE-TT-GGGGSTTHHHHHH
T ss_pred chHHhCCcCCEEECcCCcCCChHHh--HHHHcCCCcceeeccCCcccchhhHHHHHH
Confidence 2224689999999999999876543 446789999999999999987654443333
No 29
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.09 E-value=2.4e-11 Score=139.67 Aligned_cols=176 Identities=24% Similarity=0.282 Sum_probs=149.6
Q ss_pred CCCCCcEEEeeCCCCCccchhhHhhhhhhhhhhhccCCCcccchhcccchhcccCCCCCCCccEEEccCCcCccchhhcC
Q 002315 109 PFCRLKVLELRGCDLSTSAAKGLLELRHTLEKIICHNSTNALRHVFASRIVEIKDSPQWNRLSFVSCSCNRLVIMDESLQ 188 (937)
Q Consensus 109 ~L~~L~~LdLS~N~Ls~~lp~~L~~L~~Ll~LlL~~N~L~~L~~l~~~~i~~l~~l~~l~~L~~L~Ls~N~Ls~LP~sL~ 188 (937)
.+..-...||+.|++.. +|..+..+-.|..+++.+|.+..++..+ ..+..|++|+|+.|+++.+|..++
T Consensus 73 ~ltdt~~aDlsrNR~~e-lp~~~~~f~~Le~liLy~n~~r~ip~~i----------~~L~~lt~l~ls~NqlS~lp~~lC 141 (722)
T KOG0532|consen 73 DLTDTVFADLSRNRFSE-LPEEACAFVSLESLILYHNCIRTIPEAI----------CNLEALTFLDLSSNQLSHLPDGLC 141 (722)
T ss_pred cccchhhhhcccccccc-CchHHHHHHHHHHHHHHhccceecchhh----------hhhhHHHHhhhccchhhcCChhhh
Confidence 45666778999999865 7777777777778888888766665533 245689999999999999999888
Q ss_pred CCCCCcEEECCCCCCCCCc-CcCCCCCCCEEECCCCCCCCcccccccccccceecccCccccccc-cCCCCCCCCEEEcc
Q 002315 189 LLPAVETLDLSRNKFAKVD-NLRKCVNLKHLDLGFNNLRSIAAFSEVSCHIVKLVLRNNALTTLR-GIENLKSLEGLDIS 266 (937)
Q Consensus 189 ~L~~L~~LdLs~N~L~~l~-~L~~L~~L~~LdLS~N~Lt~L~~l~~~l~sL~~L~Ls~N~Lt~Lp-~L~~L~sL~~LdLS 266 (937)
.|+ |+.|-+++|+++.+| .++.+..|..|+.+.|.|..++.....+.+|+.|.+..|++..+| .+..| .|..||++
T Consensus 142 ~lp-Lkvli~sNNkl~~lp~~ig~~~tl~~ld~s~nei~slpsql~~l~slr~l~vrRn~l~~lp~El~~L-pLi~lDfS 219 (722)
T KOG0532|consen 142 DLP-LKVLIVSNNKLTSLPEEIGLLPTLAHLDVSKNEIQSLPSQLGYLTSLRDLNVRRNHLEDLPEELCSL-PLIRLDFS 219 (722)
T ss_pred cCc-ceeEEEecCccccCCcccccchhHHHhhhhhhhhhhchHHhhhHHHHHHHHHhhhhhhhCCHHHhCC-ceeeeecc
Confidence 886 899999999999986 788889999999999999999988888889999999999999987 66644 58999999
Q ss_pred CCCCCCCchhhhhcCCCCCCEEEecCCCCCCCc
Q 002315 267 YNIISTFSELEFLASLPYLLNLWLEGNPLCCSR 299 (937)
Q Consensus 267 ~N~Ls~l~~l~~L~~L~sL~~L~Ls~NpLt~~~ 299 (937)
.|+|..+| ..|..|..|++|-|.+||++..+
T Consensus 220 cNkis~iP--v~fr~m~~Lq~l~LenNPLqSPP 250 (722)
T KOG0532|consen 220 CNKISYLP--VDFRKMRHLQVLQLENNPLQSPP 250 (722)
T ss_pred cCceeecc--hhhhhhhhheeeeeccCCCCCCh
Confidence 99999998 57899999999999999998664
No 30
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.02 E-value=1.9e-10 Score=123.86 Aligned_cols=221 Identities=21% Similarity=0.208 Sum_probs=157.1
Q ss_pred HhcCCCCCcEEEccCCCCCC--CCCCCCCCCCCCcEEEeeCCCCCccchhhHhhhhhhhhhhhccCCCcccchhcccchh
Q 002315 82 ILKLLTSLKVVSALPPPARD--PTPLSLLPFCRLKVLELRGCDLSTSAAKGLLELRHTLEKIICHNSTNALRHVFASRIV 159 (937)
Q Consensus 82 ~L~~L~~Lk~LdLs~N~Is~--~iP~sLs~L~~L~~LdLS~N~Ls~~lp~~L~~L~~Ll~LlL~~N~L~~L~~l~~~~i~ 159 (937)
.-..++.++.|+|.+|.|+. .+...+.+||.|++|+|+.|.+...+ ..++
T Consensus 66 ~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I----~~lp------------------------ 117 (418)
T KOG2982|consen 66 FGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDI----KSLP------------------------ 117 (418)
T ss_pred HHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCcc----ccCc------------------------
Confidence 33456778888888888743 34445667888888888888876421 1221
Q ss_pred cccCCCCCCCccEEEccCCcCc--cchhhcCCCCCCcEEECCCCCCCCC--c--CcCCC-CCCCEEECCCCCCCC---cc
Q 002315 160 EIKDSPQWNRLSFVSCSCNRLV--IMDESLQLLPAVETLDLSRNKFAKV--D--NLRKC-VNLKHLDLGFNNLRS---IA 229 (937)
Q Consensus 160 ~l~~l~~l~~L~~L~Ls~N~Ls--~LP~sL~~L~~L~~LdLs~N~L~~l--~--~L~~L-~~L~~LdLS~N~Lt~---L~ 229 (937)
....+|+.|.|.+..+. .....+..+|.++.|.++.|.+..+ + ..... +.+++|.+..|.... +-
T Consensus 118 -----~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~vtelHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~ 192 (418)
T KOG2982|consen 118 -----LPLKNLRVLVLNGTGLSWTQSTSSLDDLPKVTELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKN 192 (418)
T ss_pred -----ccccceEEEEEcCCCCChhhhhhhhhcchhhhhhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHH
Confidence 13457888888888776 5555677888899999998866543 1 22222 356666666664332 22
Q ss_pred cccccccccceecccCccccccc---cCCCCCCCCEEEccCCCCCCCchhhhhcCCCCCCEEEecCCCCCCC--cchhhh
Q 002315 230 AFSEVSCHIVKLVLRNNALTTLR---GIENLKSLEGLDISYNIISTFSELEFLASLPYLLNLWLEGNPLCCS--RWYRAQ 304 (937)
Q Consensus 230 ~l~~~l~sL~~L~Ls~N~Lt~Lp---~L~~L~sL~~LdLS~N~Ls~l~~l~~L~~L~sL~~L~Ls~NpLt~~--~~~r~~ 304 (937)
.....+|++..+.+..|.|++.. ....++.+-.|+|+.|+|.+|..++.+..++.|..|.+.+||+... +..|..
T Consensus 193 ~l~r~Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d~l~~~err~ 272 (418)
T KOG2982|consen 193 KLSRIFPNVNSVFVCEGPLKTESSEKGSEPFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLSDPLRGGERRF 272 (418)
T ss_pred hHHhhcccchheeeecCcccchhhcccCCCCCcchhhhhcccccccHHHHHHHcCCchhheeeccCCcccccccCCcceE
Confidence 34455789999999999998863 6777888889999999999999999999999999999999999765 222222
Q ss_pred -HhhhcCCCceeccCCccCChhhHHHHHHHHHhh
Q 002315 305 -VFSYFAHPAKLKVDGKEISTRELWERQLIIARR 337 (937)
Q Consensus 305 -~~~~l~~L~~L~LdgN~Is~~e~~~~~~l~~~~ 337 (937)
+++.+ ..+-.|+|..|+..++...+..|.+.
T Consensus 273 llIaRL--~~v~vLNGskIss~er~dSEr~fVRy 304 (418)
T KOG2982|consen 273 LLIARL--TKVQVLNGSKISSRERKDSERRFVRY 304 (418)
T ss_pred EEEeec--cceEEecCcccchhhhhhhHHHHHHH
Confidence 23333 44446788899999999888888775
No 31
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.99 E-value=4.3e-10 Score=128.41 Aligned_cols=127 Identities=35% Similarity=0.369 Sum_probs=65.2
Q ss_pred CCCccEEEccCCcCccchhhcCCCCCCcEEECCCCCCCCCcCc-CCCCCCCEEECCCCCCCCcccccccccccceecccC
Q 002315 167 WNRLSFVSCSCNRLVIMDESLQLLPAVETLDLSRNKFAKVDNL-RKCVNLKHLDLGFNNLRSIAAFSEVSCHIVKLVLRN 245 (937)
Q Consensus 167 l~~L~~L~Ls~N~Ls~LP~sL~~L~~L~~LdLs~N~L~~l~~L-~~L~~L~~LdLS~N~Lt~L~~l~~~l~sL~~L~Ls~ 245 (937)
++.|+.|++++|++..+|.....++.|+.|++++|++..++.. ..+..|+.|.+++|.+..++.....+..+..|.+.+
T Consensus 162 l~~L~~L~l~~N~l~~l~~~~~~~~~L~~L~ls~N~i~~l~~~~~~~~~L~~l~~~~N~~~~~~~~~~~~~~l~~l~l~~ 241 (394)
T COG4886 162 LPNLKNLDLSFNDLSDLPKLLSNLSNLNNLDLSGNKISDLPPEIELLSALEELDLSNNSIIELLSSLSNLKNLSGLELSN 241 (394)
T ss_pred cccccccccCCchhhhhhhhhhhhhhhhheeccCCccccCchhhhhhhhhhhhhhcCCcceecchhhhhcccccccccCC
Confidence 4455555555555555554444555555555555555555433 233335555555554333333333344555555555
Q ss_pred cccccc-ccCCCCCCCCEEEccCCCCCCCchhhhhcCCCCCCEEEecCCCCC
Q 002315 246 NALTTL-RGIENLKSLEGLDISYNIISTFSELEFLASLPYLLNLWLEGNPLC 296 (937)
Q Consensus 246 N~Lt~L-p~L~~L~sL~~LdLS~N~Ls~l~~l~~L~~L~sL~~L~Ls~NpLt 296 (937)
|++..+ ..+..+++|+.|++++|.++.++. +..+.+|+.|++++|.+.
T Consensus 242 n~~~~~~~~~~~l~~l~~L~~s~n~i~~i~~---~~~~~~l~~L~~s~n~~~ 290 (394)
T COG4886 242 NKLEDLPESIGNLSNLETLDLSNNQISSISS---LGSLTNLRELDLSGNSLS 290 (394)
T ss_pred ceeeeccchhccccccceecccccccccccc---ccccCccCEEeccCcccc
Confidence 555552 244555555555555555555542 445555555555555554
No 32
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.98 E-value=4.7e-10 Score=128.05 Aligned_cols=182 Identities=24% Similarity=0.276 Sum_probs=155.3
Q ss_pred HhcCCCCCcEEEccCCCCCCCCCCCCCCCC-CCcEEEeeCCCCCccchhhHhhhhhhhhhhhccCCCcccchhcccchhc
Q 002315 82 ILKLLTSLKVVSALPPPARDPTPLSLLPFC-RLKVLELRGCDLSTSAAKGLLELRHTLEKIICHNSTNALRHVFASRIVE 160 (937)
Q Consensus 82 ~L~~L~~Lk~LdLs~N~Is~~iP~sLs~L~-~L~~LdLS~N~Ls~~lp~~L~~L~~Ll~LlL~~N~L~~L~~l~~~~i~~ 160 (937)
.+..++.++.|++.+|.++.+ |.....++ +|+.|++++|.+.. +|..+..++.|..+.+..|++..++....
T Consensus 111 ~~~~~~~l~~L~l~~n~i~~i-~~~~~~~~~nL~~L~l~~N~i~~-l~~~~~~l~~L~~L~l~~N~l~~l~~~~~----- 183 (394)
T COG4886 111 ELLELTNLTSLDLDNNNITDI-PPLIGLLKSNLKELDLSDNKIES-LPSPLRNLPNLKNLDLSFNDLSDLPKLLS----- 183 (394)
T ss_pred hhhcccceeEEecCCcccccC-ccccccchhhcccccccccchhh-hhhhhhccccccccccCCchhhhhhhhhh-----
Confidence 455668999999999999865 56566774 99999999999976 55778999999999999998877776431
Q ss_pred ccCCCCCCCccEEEccCCcCccchhhcCCCCCCcEEECCCCC-CCCCcCcCCCCCCCEEECCCCCCCCcccccccccccc
Q 002315 161 IKDSPQWNRLSFVSCSCNRLVIMDESLQLLPAVETLDLSRNK-FAKVDNLRKCVNLKHLDLGFNNLRSIAAFSEVSCHIV 239 (937)
Q Consensus 161 l~~l~~l~~L~~L~Ls~N~Ls~LP~sL~~L~~L~~LdLs~N~-L~~l~~L~~L~~L~~LdLS~N~Lt~L~~l~~~l~sL~ 239 (937)
..+.|+.|++++|++..+|..+..+..|++|.+++|. +..+..+..+.++..|.+.+|++..++.....++.|+
T Consensus 184 -----~~~~L~~L~ls~N~i~~l~~~~~~~~~L~~l~~~~N~~~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~l~~l~ 258 (394)
T COG4886 184 -----NLSNLNNLDLSGNKISDLPPEIELLSALEELDLSNNSIIELLSSLSNLKNLSGLELSNNKLEDLPESIGNLSNLE 258 (394)
T ss_pred -----hhhhhhheeccCCccccCchhhhhhhhhhhhhhcCCcceecchhhhhcccccccccCCceeeeccchhccccccc
Confidence 4568999999999999999887777789999999995 5555678899999999999999988776677778899
Q ss_pred eecccCccccccccCCCCCCCCEEEccCCCCCCCch
Q 002315 240 KLVLRNNALTTLRGIENLKSLEGLDISYNIISTFSE 275 (937)
Q Consensus 240 ~L~Ls~N~Lt~Lp~L~~L~sL~~LdLS~N~Ls~l~~ 275 (937)
.|++++|.++.++.+..+.+|+.|++++|.+...+.
T Consensus 259 ~L~~s~n~i~~i~~~~~~~~l~~L~~s~n~~~~~~~ 294 (394)
T COG4886 259 TLDLSNNQISSISSLGSLTNLRELDLSGNSLSNALP 294 (394)
T ss_pred eeccccccccccccccccCccCEEeccCccccccch
Confidence 999999999999889999999999999999987654
No 33
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.97 E-value=1.1e-10 Score=134.99 Aligned_cols=228 Identities=27% Similarity=0.332 Sum_probs=160.1
Q ss_pred HHhcCCCCCcEEEccCCCCCCCCCCCCCCCCCCcEEEeeCCCCCccchhhHhhhhhhhhhhhccCCCcccchhcccchhc
Q 002315 81 RILKLLTSLKVVSALPPPARDPTPLSLLPFCRLKVLELRGCDLSTSAAKGLLELRHTLEKIICHNSTNALRHVFASRIVE 160 (937)
Q Consensus 81 ~~L~~L~~Lk~LdLs~N~Is~~iP~sLs~L~~L~~LdLS~N~Ls~~lp~~L~~L~~Ll~LlL~~N~L~~L~~l~~~~i~~ 160 (937)
..+..+.+|..|++.+|.|... ...+..+++|++|+|++|.|+.. .++..+..|..|.+.+|.+..+.++
T Consensus 89 ~~l~~~~~l~~l~l~~n~i~~i-~~~l~~~~~L~~L~ls~N~I~~i--~~l~~l~~L~~L~l~~N~i~~~~~~------- 158 (414)
T KOG0531|consen 89 NHLSKLKSLEALDLYDNKIEKI-ENLLSSLVNLQVLDLSFNKITKL--EGLSTLTLLKELNLSGNLISDISGL------- 158 (414)
T ss_pred cccccccceeeeeccccchhhc-ccchhhhhcchheeccccccccc--cchhhccchhhheeccCcchhccCC-------
Confidence 3466778888888888888654 22267788888888888888763 3456666677777777766555543
Q ss_pred ccCCCCCCCccEEEccCCcCccchhh-cCCCCCCcEEECCCCCCCCCcCcCCCCCCCEEECCCCCCCCccccccccc--c
Q 002315 161 IKDSPQWNRLSFVSCSCNRLVIMDES-LQLLPAVETLDLSRNKFAKVDNLRKCVNLKHLDLGFNNLRSIAAFSEVSC--H 237 (937)
Q Consensus 161 l~~l~~l~~L~~L~Ls~N~Ls~LP~s-L~~L~~L~~LdLs~N~L~~l~~L~~L~~L~~LdLS~N~Lt~L~~l~~~l~--s 237 (937)
..+..|+.+++++|.+..+... +..+.+|+.+++..|.+..+..+..+..+..+++..|.++.+.+.... . .
T Consensus 159 ----~~l~~L~~l~l~~n~i~~ie~~~~~~~~~l~~l~l~~n~i~~i~~~~~~~~l~~~~l~~n~i~~~~~l~~~-~~~~ 233 (414)
T KOG0531|consen 159 ----ESLKSLKLLDLSYNRIVDIENDELSELISLEELDLGGNSIREIEGLDLLKKLVLLSLLDNKISKLEGLNEL-VMLH 233 (414)
T ss_pred ----ccchhhhcccCCcchhhhhhhhhhhhccchHHHhccCCchhcccchHHHHHHHHhhcccccceeccCcccc-hhHH
Confidence 3466788888888888877543 467778888888888888777766666777778888888776654432 2 3
Q ss_pred cceecccCcccccc-ccCCCCCCCCEEEccCCCCCCCchhhhhcCCCCCCEEEecCCCCCCCc-chhhhHhhhcCCCcee
Q 002315 238 IVKLVLRNNALTTL-RGIENLKSLEGLDISYNIISTFSELEFLASLPYLLNLWLEGNPLCCSR-WYRAQVFSYFAHPAKL 315 (937)
Q Consensus 238 L~~L~Ls~N~Lt~L-p~L~~L~sL~~LdLS~N~Ls~l~~l~~L~~L~sL~~L~Ls~NpLt~~~-~~r~~~~~~l~~L~~L 315 (937)
|+.+++++|++..+ ..+..++.+..|++..|++..+.. +...+.+..+++..|++.... ..........+.+..+
T Consensus 234 L~~l~l~~n~i~~~~~~~~~~~~l~~l~~~~n~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 310 (414)
T KOG0531|consen 234 LRELYLSGNRISRSPEGLENLKNLPVLDLSSNRISNLEG---LERLPKLSELWLNDNKLALSEAISQEYITSAAPTLVTL 310 (414)
T ss_pred HHHHhcccCccccccccccccccccccchhhcccccccc---ccccchHHHhccCcchhcchhhhhcccccccccccccc
Confidence 78888888888887 577788888888888888877643 456667777788888775331 1111113456677788
Q ss_pred ccCCccCChhh
Q 002315 316 KVDGKEISTRE 326 (937)
Q Consensus 316 ~LdgN~Is~~e 326 (937)
.+.+|++....
T Consensus 311 ~~~~~~~~~~~ 321 (414)
T KOG0531|consen 311 TLELNPIRKIS 321 (414)
T ss_pred ccccCcccccc
Confidence 88888876544
No 34
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.91 E-value=2.6e-10 Score=122.82 Aligned_cols=131 Identities=23% Similarity=0.241 Sum_probs=107.0
Q ss_pred CCCCCcEEECCCCCCCCCc-CcCCCCCCCEEECCCCCCCCcccccccccccceecccCccccccc-cCCCCCCCCEEEcc
Q 002315 189 LLPAVETLDLSRNKFAKVD-NLRKCVNLKHLDLGFNNLRSIAAFSEVSCHIVKLVLRNNALTTLR-GIENLKSLEGLDIS 266 (937)
Q Consensus 189 ~L~~L~~LdLs~N~L~~l~-~L~~L~~L~~LdLS~N~Lt~L~~l~~~l~sL~~L~Ls~N~Lt~Lp-~L~~L~sL~~LdLS 266 (937)
.+..|++|||++|.|+.++ ...-+|.++.|++++|.|..+..+ ..+++|+.|+|++|.++.+. +-..+-+++.|.|+
T Consensus 282 TWq~LtelDLS~N~I~~iDESvKL~Pkir~L~lS~N~i~~v~nL-a~L~~L~~LDLS~N~Ls~~~Gwh~KLGNIKtL~La 360 (490)
T KOG1259|consen 282 TWQELTELDLSGNLITQIDESVKLAPKLRRLILSQNRIRTVQNL-AELPQLQLLDLSGNLLAECVGWHLKLGNIKTLKLA 360 (490)
T ss_pred hHhhhhhccccccchhhhhhhhhhccceeEEeccccceeeehhh-hhcccceEeecccchhHhhhhhHhhhcCEeeeehh
Confidence 3557899999999999886 566668999999999999988774 44589999999999998886 44677889999999
Q ss_pred CCCCCCCchhhhhcCCCCCCEEEecCCCCCCCcchhhhHhhhcCCCceeccCCccCChh
Q 002315 267 YNIISTFSELEFLASLPYLLNLWLEGNPLCCSRWYRAQVFSYFAHPAKLKVDGKEISTR 325 (937)
Q Consensus 267 ~N~Ls~l~~l~~L~~L~sL~~L~Ls~NpLt~~~~~r~~~~~~l~~L~~L~LdgN~Is~~ 325 (937)
.|.|.++. .+.++-+|..|++++|+|...... ..+..+|+|+.+.|-+||+...
T Consensus 361 ~N~iE~LS---GL~KLYSLvnLDl~~N~Ie~ldeV--~~IG~LPCLE~l~L~~NPl~~~ 414 (490)
T KOG1259|consen 361 QNKIETLS---GLRKLYSLVNLDLSSNQIEELDEV--NHIGNLPCLETLRLTGNPLAGS 414 (490)
T ss_pred hhhHhhhh---hhHhhhhheeccccccchhhHHHh--cccccccHHHHHhhcCCCcccc
Confidence 99988765 367788899999999999765433 4477899999999999999753
No 35
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.89 E-value=1.2e-10 Score=130.82 Aligned_cols=212 Identities=19% Similarity=0.160 Sum_probs=155.9
Q ss_pred CCCCCCCcEEEeeCCCCCccch-hhHhhhhhhhhhhhccCCCcccchhcccchhcccCCCCCCCccEEEccCCcCccchh
Q 002315 107 LLPFCRLKVLELRGCDLSTSAA-KGLLELRHTLEKIICHNSTNALRHVFASRIVEIKDSPQWNRLSFVSCSCNRLVIMDE 185 (937)
Q Consensus 107 Ls~L~~L~~LdLS~N~Ls~~lp-~~L~~L~~Ll~LlL~~N~L~~L~~l~~~~i~~l~~l~~l~~L~~L~Ls~N~Ls~LP~ 185 (937)
=+++.+|+.+.|.++.+..... .....+++..+|+++.|-+.....+ +.-+..+++|+.|+|+.|++...-.
T Consensus 117 Qsn~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v-------~~i~eqLp~Le~LNls~Nrl~~~~~ 189 (505)
T KOG3207|consen 117 QSNLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPV-------LKIAEQLPSLENLNLSSNRLSNFIS 189 (505)
T ss_pred hhhHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHH-------HHHHHhcccchhcccccccccCCcc
Confidence 4578899999999999864221 3566788888888888843333222 1122467899999999999873222
Q ss_pred --hcCCCCCCcEEECCCCCCCCCc---CcCCCCCCCEEECCCCCCCCccc-ccccccccceecccCccccccc---cCCC
Q 002315 186 --SLQLLPAVETLDLSRNKFAKVD---NLRKCVNLKHLDLGFNNLRSIAA-FSEVSCHIVKLVLRNNALTTLR---GIEN 256 (937)
Q Consensus 186 --sL~~L~~L~~LdLs~N~L~~l~---~L~~L~~L~~LdLS~N~Lt~L~~-l~~~l~sL~~L~Ls~N~Lt~Lp---~L~~ 256 (937)
.-..+++|+.|.|+.|.++.-+ .+..+|+|..|+|.+|....+.. ....+..|+.|+|++|.+-..+ ..+.
T Consensus 190 s~~~~~l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~ 269 (505)
T KOG3207|consen 190 SNTTLLLSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGT 269 (505)
T ss_pred ccchhhhhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCccccccccccccc
Confidence 1235778999999999998522 45677999999999996333322 2334578999999999988754 6788
Q ss_pred CCCCCEEEccCCCCCCCchhhh-----hcCCCCCCEEEecCCCCCCCcchhhhHhhhcCCCceeccCCccCChhhH
Q 002315 257 LKSLEGLDISYNIISTFSELEF-----LASLPYLLNLWLEGNPLCCSRWYRAQVFSYFAHPAKLKVDGKEISTREL 327 (937)
Q Consensus 257 L~sL~~LdLS~N~Ls~l~~l~~-----L~~L~sL~~L~Ls~NpLt~~~~~r~~~~~~l~~L~~L~LdgN~Is~~e~ 327 (937)
++.|+.|+++.+.|.++..++. ...+++|++|++..|++...+.+ ..+..+++|+.+.+.+|+++.++-
T Consensus 270 l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl--~~l~~l~nlk~l~~~~n~ln~e~~ 343 (505)
T KOG3207|consen 270 LPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSL--NHLRTLENLKHLRITLNYLNKETD 343 (505)
T ss_pred ccchhhhhccccCcchhcCCCccchhhhcccccceeeecccCcccccccc--chhhccchhhhhhccccccccccc
Confidence 9999999999999988765443 45689999999999999765433 334567888889999999987653
No 36
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.84 E-value=1.4e-09 Score=119.70 Aligned_cols=237 Identities=22% Similarity=0.259 Sum_probs=107.4
Q ss_pred ccCCCCCcch----HHHHHhcCCCCCcEEEccCCCCCC----CCCC-------CCCCCCCCcEEEeeCCCCCccchhhHh
Q 002315 68 SDLGDHRALE----QLRRILKLLTSLKVVSALPPPARD----PTPL-------SLLPFCRLKVLELRGCDLSTSAAKGLL 132 (937)
Q Consensus 68 LdLs~n~~le----~Lp~~L~~L~~Lk~LdLs~N~Is~----~iP~-------sLs~L~~L~~LdLS~N~Ls~~lp~~L~ 132 (937)
++|++|.+-. .+...+.+.++|+..++++ -+++ .+|. ++...++|++||||.|-|....+..|.
T Consensus 35 l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd-~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G~~g~~~l~ 113 (382)
T KOG1909|consen 35 LDLSGNTFGTEAARAIAKVLASKKELREVNLSD-MFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFGPKGIRGLE 113 (382)
T ss_pred EeccCCchhHHHHHHHHHHHhhcccceeeehHh-hhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccCccchHHHH
Confidence 4455554432 2344566666666666643 2222 2232 233445677777777766544444443
Q ss_pred hh----hhhhhhhhccCCCcccchhccc-chh---cccCCCCCCCccEEEccCCcCc-----cchhhcCCCCCCcEEECC
Q 002315 133 EL----RHTLEKIICHNSTNALRHVFAS-RIV---EIKDSPQWNRLSFVSCSCNRLV-----IMDESLQLLPAVETLDLS 199 (937)
Q Consensus 133 ~L----~~Ll~LlL~~N~L~~L~~l~~~-~i~---~l~~l~~l~~L~~L~Ls~N~Ls-----~LP~sL~~L~~L~~LdLs 199 (937)
.+ ..|.+|.+.+|.+....+...+ .+. .....+.-+.|+++.+++|++. .+...|...+.|+.+.+.
T Consensus 114 ~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~leevr~~ 193 (382)
T KOG1909|consen 114 ELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGGATALAEAFQSHPTLEEVRLS 193 (382)
T ss_pred HHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccccHHHHHHHHHhccccceEEEe
Confidence 33 2334444444433222111100 000 0011123345666666666665 223345555666666666
Q ss_pred CCCCCCC------cCcCCCCCCCEEECCCCCCCCcccccccccccceecccCcccccc-ccCCCCCCCCEEEccCCCCCC
Q 002315 200 RNKFAKV------DNLRKCVNLKHLDLGFNNLRSIAAFSEVSCHIVKLVLRNNALTTL-RGIENLKSLEGLDISYNIIST 272 (937)
Q Consensus 200 ~N~L~~l------~~L~~L~~L~~LdLS~N~Lt~L~~l~~~l~sL~~L~Ls~N~Lt~L-p~L~~L~sL~~LdLS~N~Ls~ 272 (937)
.|.|..- ..|..++.|+.|||.+|.++.-.... + ..+..+++|+.|+++++.+..
T Consensus 194 qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~------------------LakaL~s~~~L~El~l~dcll~~ 255 (382)
T KOG1909|consen 194 QNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVA------------------LAKALSSWPHLRELNLGDCLLEN 255 (382)
T ss_pred cccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHH------------------HHHHhcccchheeeccccccccc
Confidence 6655431 14555555666666665554311100 1 133444455555555555544
Q ss_pred Cchhh---hh-cCCCCCCEEEecCCCCCCCcch-hhhHhhhcCCCceeccCCccCC
Q 002315 273 FSELE---FL-ASLPYLLNLWLEGNPLCCSRWY-RAQVFSYFAHPAKLKVDGKEIS 323 (937)
Q Consensus 273 l~~l~---~L-~~L~sL~~L~Ls~NpLt~~~~~-r~~~~~~l~~L~~L~LdgN~Is 323 (937)
-.... .+ ...|+|+.|.|.+|.|+..... ....+...+.|..|.|++|.+.
T Consensus 256 ~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l~ 311 (382)
T KOG1909|consen 256 EGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRLG 311 (382)
T ss_pred ccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCccccc
Confidence 22211 11 2345566666666665533111 0111223455666666666663
No 37
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.84 E-value=3.5e-10 Score=130.70 Aligned_cols=218 Identities=25% Similarity=0.264 Sum_probs=144.5
Q ss_pred cCCCCCcEEEccCCCCCCCCCCCCCCCCCCcEEEeeCCCCCccchhhHhhhhhhhhhhhccCCCcccchhcccchhcccC
Q 002315 84 KLLTSLKVVSALPPPARDPTPLSLLPFCRLKVLELRGCDLSTSAAKGLLELRHTLEKIICHNSTNALRHVFASRIVEIKD 163 (937)
Q Consensus 84 ~~L~~Lk~LdLs~N~Is~~iP~sLs~L~~L~~LdLS~N~Ls~~lp~~L~~L~~Ll~LlL~~N~L~~L~~l~~~~i~~l~~ 163 (937)
..+..++.+.+..|.|.. +-..+..+++|+.|++.+|.|... ...+..+.+|..+.+++|.|..+.++
T Consensus 69 ~~l~~l~~l~l~~n~i~~-~~~~l~~~~~l~~l~l~~n~i~~i-~~~l~~~~~L~~L~ls~N~I~~i~~l---------- 136 (414)
T KOG0531|consen 69 ESLTSLKELNLRQNLIAK-ILNHLSKLKSLEALDLYDNKIEKI-ENLLSSLVNLQVLDLSFNKITKLEGL---------- 136 (414)
T ss_pred HHhHhHHhhccchhhhhh-hhcccccccceeeeeccccchhhc-ccchhhhhcchheeccccccccccch----------
Confidence 346677777788888865 234578889999999999999862 22266677777777777765555443
Q ss_pred CCCCCCccEEEccCCcCccchhhcCCCCCCcEEECCCCCCCCCcC--cCCCCCCCEEECCCCCCCCccccccccccccee
Q 002315 164 SPQWNRLSFVSCSCNRLVIMDESLQLLPAVETLDLSRNKFAKVDN--LRKCVNLKHLDLGFNNLRSIAAFSEVSCHIVKL 241 (937)
Q Consensus 164 l~~l~~L~~L~Ls~N~Ls~LP~sL~~L~~L~~LdLs~N~L~~l~~--L~~L~~L~~LdLS~N~Lt~L~~l~~~l~sL~~L 241 (937)
..++.|+.|++++|.|..+ ..+..++.|+.+++++|.+..++. +..+.+|+.|.+.+|.+..+...... ..+..+
T Consensus 137 -~~l~~L~~L~l~~N~i~~~-~~~~~l~~L~~l~l~~n~i~~ie~~~~~~~~~l~~l~l~~n~i~~i~~~~~~-~~l~~~ 213 (414)
T KOG0531|consen 137 -STLTLLKELNLSGNLISDI-SGLESLKSLKLLDLSYNRIVDIENDELSELISLEELDLGGNSIREIEGLDLL-KKLVLL 213 (414)
T ss_pred -hhccchhhheeccCcchhc-cCCccchhhhcccCCcchhhhhhhhhhhhccchHHHhccCCchhcccchHHH-HHHHHh
Confidence 2445577777777777766 345557777777777777777765 47777777777777777666543322 345555
Q ss_pred cccCccccccccCCCCCC--CCEEEccCCCCCCCchhhhhcCCCCCCEEEecCCCCCCCcchhhhHhhhcCCCceeccCC
Q 002315 242 VLRNNALTTLRGIENLKS--LEGLDISYNIISTFSELEFLASLPYLLNLWLEGNPLCCSRWYRAQVFSYFAHPAKLKVDG 319 (937)
Q Consensus 242 ~Ls~N~Lt~Lp~L~~L~s--L~~LdLS~N~Ls~l~~l~~L~~L~sL~~L~Ls~NpLt~~~~~r~~~~~~l~~L~~L~Ldg 319 (937)
++..|.++.+..+..+.. |+.+++++|++...+ ..+..+..+..|++..|.+..... +.....+..+.+..
T Consensus 214 ~l~~n~i~~~~~l~~~~~~~L~~l~l~~n~i~~~~--~~~~~~~~l~~l~~~~n~~~~~~~-----~~~~~~~~~~~~~~ 286 (414)
T KOG0531|consen 214 SLLDNKISKLEGLNELVMLHLRELYLSGNRISRSP--EGLENLKNLPVLDLSSNRISNLEG-----LERLPKLSELWLND 286 (414)
T ss_pred hcccccceeccCcccchhHHHHHHhcccCcccccc--ccccccccccccchhhcccccccc-----ccccchHHHhccCc
Confidence 777777777665555555 777777777777653 335566677777777777754432 22334455555666
Q ss_pred ccCC
Q 002315 320 KEIS 323 (937)
Q Consensus 320 N~Is 323 (937)
|++.
T Consensus 287 ~~~~ 290 (414)
T KOG0531|consen 287 NKLA 290 (414)
T ss_pred chhc
Confidence 6654
No 38
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=98.62 E-value=3.3e-08 Score=102.24 Aligned_cols=118 Identities=27% Similarity=0.369 Sum_probs=86.3
Q ss_pred CCCEEECCCCCCCCcccccccccccceecccCccccccc-cC-CCCCCCCEEEccCCCCCCCchhhhhcCCCCCCEEEec
Q 002315 214 NLKHLDLGFNNLRSIAAFSEVSCHIVKLVLRNNALTTLR-GI-ENLKSLEGLDISYNIISTFSELEFLASLPYLLNLWLE 291 (937)
Q Consensus 214 ~L~~LdLS~N~Lt~L~~l~~~l~sL~~L~Ls~N~Lt~Lp-~L-~~L~sL~~LdLS~N~Ls~l~~l~~L~~L~sL~~L~Ls 291 (937)
+...+||++|.|..++.+.. +++|.+|.|.+|+|+.|. .+ ..+++|..|.|.+|.|..+.++..+..+|+|++|.+-
T Consensus 43 ~~d~iDLtdNdl~~l~~lp~-l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltll 121 (233)
T KOG1644|consen 43 QFDAIDLTDNDLRKLDNLPH-LPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTLL 121 (233)
T ss_pred ccceecccccchhhcccCCC-ccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceeeec
Confidence 34455555555554443322 245555555555555552 22 2356788888888888888888889999999999999
Q ss_pred CCCCCCCcchhhhHhhhcCCCceeccCCccCChhhHHHHHHHH
Q 002315 292 GNPLCCSRWYRAQVFSYFAHPAKLKVDGKEISTRELWERQLII 334 (937)
Q Consensus 292 ~NpLt~~~~~r~~~~~~l~~L~~L~LdgN~Is~~e~~~~~~l~ 334 (937)
+||++....||..++-.+|.+++ ||...|+..|+..++.++
T Consensus 122 ~Npv~~k~~YR~yvl~klp~l~~--LDF~kVt~~ER~~A~~~f 162 (233)
T KOG1644|consen 122 GNPVEHKKNYRLYVLYKLPSLRT--LDFQKVTRKEREEAEVFF 162 (233)
T ss_pred CCchhcccCceeEEEEecCcceE--eehhhhhHHHHHHHHHHh
Confidence 99999999999998887777765 567788999999998887
No 39
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.61 E-value=2.1e-08 Score=110.53 Aligned_cols=222 Identities=18% Similarity=0.116 Sum_probs=156.8
Q ss_pred HHHHhcCCCCCcEEEccCCCCCCC----CCCCCCCCCCCcEEEeeCCCC---CccchhhHhhhhhhhhhhhccCCCcccc
Q 002315 79 LRRILKLLTSLKVVSALPPPARDP----TPLSLLPFCRLKVLELRGCDL---STSAAKGLLELRHTLEKIICHNSTNALR 151 (937)
Q Consensus 79 Lp~~L~~L~~Lk~LdLs~N~Is~~----iP~sLs~L~~L~~LdLS~N~L---s~~lp~~L~~L~~Ll~LlL~~N~L~~L~ 151 (937)
+-..+..+..++.|+|++|.|... +...+...++|+..++++=.. ...+|..+..|..
T Consensus 22 v~~~~~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~--------------- 86 (382)
T KOG1909|consen 22 VEEELEPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSK--------------- 86 (382)
T ss_pred HHHHhcccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHH---------------
Confidence 444566677888888888887432 334455667777777765322 1233333322211
Q ss_pred hhcccchhcccCCCCCCCccEEEccCCcCc--c---chhhcCCCCCCcEEECCCCCCCCC---------------cCcCC
Q 002315 152 HVFASRIVEIKDSPQWNRLSFVSCSCNRLV--I---MDESLQLLPAVETLDLSRNKFAKV---------------DNLRK 211 (937)
Q Consensus 152 ~l~~~~i~~l~~l~~l~~L~~L~Ls~N~Ls--~---LP~sL~~L~~L~~LdLs~N~L~~l---------------~~L~~ 211 (937)
.+..+++|++|+||.|.+. . +-.-+..+..|++|.|.+|.+... .....
T Consensus 87 -----------aL~~~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~ 155 (382)
T KOG1909|consen 87 -----------ALLGCPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAAS 155 (382)
T ss_pred -----------HHhcCCceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCC
Confidence 1234568999999999887 2 223567788999999999988752 12455
Q ss_pred CCCCCEEECCCCCCCCcc-----cccccccccceecccCccccc--c----ccCCCCCCCCEEEccCCCCCCCchh---h
Q 002315 212 CVNLKHLDLGFNNLRSIA-----AFSEVSCHIVKLVLRNNALTT--L----RGIENLKSLEGLDISYNIISTFSEL---E 277 (937)
Q Consensus 212 L~~L~~LdLS~N~Lt~L~-----~l~~~l~sL~~L~Ls~N~Lt~--L----p~L~~L~sL~~LdLS~N~Ls~l~~l---~ 277 (937)
-+.|+++..+.|++..-+ ..+...+.|+.+.+..|.|.. + ..+..+++|+.|||.+|.++.-... .
T Consensus 156 ~~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~Lak 235 (382)
T KOG1909|consen 156 KPKLRVFICGRNRLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAK 235 (382)
T ss_pred CcceEEEEeeccccccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHH
Confidence 689999999999998644 234455899999999998865 2 3788999999999999999864332 4
Q ss_pred hhcCCCCCCEEEecCCCCCCCcc--hhhhHhhhcCCCceeccCCccCChhh
Q 002315 278 FLASLPYLLNLWLEGNPLCCSRW--YRAQVFSYFAHPAKLKVDGKEISTRE 326 (937)
Q Consensus 278 ~L~~L~sL~~L~Ls~NpLt~~~~--~r~~~~~~l~~L~~L~LdgN~Is~~e 326 (937)
.+..++.|+.|+++++.+..... +-...-...|.|+++.|.+|.|+.+.
T Consensus 236 aL~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da 286 (382)
T KOG1909|consen 236 ALSSWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDA 286 (382)
T ss_pred HhcccchheeecccccccccccHHHHHHHHhccCCCCceeccCcchhHHHH
Confidence 56788899999999999976531 11222345788999999999998654
No 40
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.41 E-value=1.1e-08 Score=120.38 Aligned_cols=130 Identities=20% Similarity=0.206 Sum_probs=102.5
Q ss_pred CCcEEECCCCCCCCCc-CcCCCCCCCEEECCCCCCCCcccccccccccceecccCccccccccC--CCCCCCCEEEccCC
Q 002315 192 AVETLDLSRNKFAKVD-NLRKCVNLKHLDLGFNNLRSIAAFSEVSCHIVKLVLRNNALTTLRGI--ENLKSLEGLDISYN 268 (937)
Q Consensus 192 ~L~~LdLs~N~L~~l~-~L~~L~~L~~LdLS~N~Lt~L~~l~~~l~sL~~L~Ls~N~Lt~Lp~L--~~L~sL~~LdLS~N 268 (937)
.|.+.+.++|.+..++ .+.-++.|+.|+|++|+++.+. ....++.|++|||+.|.++.+|.+ ..+. |..|.|++|
T Consensus 165 ~L~~a~fsyN~L~~mD~SLqll~ale~LnLshNk~~~v~-~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~-L~~L~lrnN 242 (1096)
T KOG1859|consen 165 KLATASFSYNRLVLMDESLQLLPALESLNLSHNKFTKVD-NLRRLPKLKHLDLSYNCLRHVPQLSMVGCK-LQLLNLRNN 242 (1096)
T ss_pred hHhhhhcchhhHHhHHHHHHHHHHhhhhccchhhhhhhH-HHHhcccccccccccchhccccccchhhhh-heeeeeccc
Confidence 5677777888887775 6777788999999999999887 445668999999999999998744 3444 999999999
Q ss_pred CCCCCchhhhhcCCCCCCEEEecCCCCCCCcchhhhHhhhcCCCceeccCCccCChhhHH
Q 002315 269 IISTFSELEFLASLPYLLNLWLEGNPLCCSRWYRAQVFSYFAHPAKLKVDGKEISTRELW 328 (937)
Q Consensus 269 ~Ls~l~~l~~L~~L~sL~~L~Ls~NpLt~~~~~r~~~~~~l~~L~~L~LdgN~Is~~e~~ 328 (937)
.++.+.. +.+|.+|+.|+|+.|-|.....+. .+..+..|..|+|.|||+-|..-.
T Consensus 243 ~l~tL~g---ie~LksL~~LDlsyNll~~hseL~--pLwsLs~L~~L~LeGNPl~c~p~h 297 (1096)
T KOG1859|consen 243 ALTTLRG---IENLKSLYGLDLSYNLLSEHSELE--PLWSLSSLIVLWLEGNPLCCAPWH 297 (1096)
T ss_pred HHHhhhh---HHhhhhhhccchhHhhhhcchhhh--HHHHHHHHHHHhhcCCccccCHHH
Confidence 9988754 678889999999999998765432 233566789999999999886533
No 41
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.32 E-value=5.1e-08 Score=104.72 Aligned_cols=118 Identities=30% Similarity=0.414 Sum_probs=98.7
Q ss_pred CCCCCEEECCCCCCCCcccccccccccceecccCccccccccCCCCCCCCEEEccCCCCCCCchhhhhcCCCCCCEEEec
Q 002315 212 CVNLKHLDLGFNNLRSIAAFSEVSCHIVKLVLRNNALTTLRGIENLKSLEGLDISYNIISTFSELEFLASLPYLLNLWLE 291 (937)
Q Consensus 212 L~~L~~LdLS~N~Lt~L~~l~~~l~sL~~L~Ls~N~Lt~Lp~L~~L~sL~~LdLS~N~Ls~l~~l~~L~~L~sL~~L~Ls 291 (937)
+.+.+.|++-++.|..|.-. ..++.|+.|.|+-|+|+.+..+..|++|+.|+|..|.|.++..+..+.++|+|+.|+|.
T Consensus 18 l~~vkKLNcwg~~L~DIsic-~kMp~lEVLsLSvNkIssL~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL~ 96 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLDDISIC-EKMPLLEVLSLSVNKISSLAPLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWLD 96 (388)
T ss_pred HHHhhhhcccCCCccHHHHH-HhcccceeEEeeccccccchhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhhc
Confidence 45667777888877766533 34478888888888898888889999999999999999999999999999999999999
Q ss_pred CCCCCCC--cchhhhHhhhcCCCceeccCCccCChhhHHHHHH
Q 002315 292 GNPLCCS--RWYRAQVFSYFAHPAKLKVDGKEISTRELWERQL 332 (937)
Q Consensus 292 ~NpLt~~--~~~r~~~~~~l~~L~~L~LdgN~Is~~e~~~~~~ 332 (937)
.||.+.. ..||..++..+|+|+ .||+-+++..+...+..
T Consensus 97 ENPCc~~ag~nYR~~VLR~LPnLk--KLDnv~VteeEle~ALr 137 (388)
T KOG2123|consen 97 ENPCCGEAGQNYRRKVLRVLPNLK--KLDNVPVTEEELEEALR 137 (388)
T ss_pred cCCcccccchhHHHHHHHHcccch--hccCccccHHHHHHHHh
Confidence 9998765 689999999887776 67899999988777543
No 42
>PLN03150 hypothetical protein; Provisional
Probab=98.31 E-value=8.1e-07 Score=108.18 Aligned_cols=104 Identities=18% Similarity=0.212 Sum_probs=87.8
Q ss_pred CCcEEEccCCCCCCCCCCCCCCCCCCcEEEeeCCCCCccchhhHhhhhhhhhhhhccCCCcccchhcccchhcccCCCCC
Q 002315 88 SLKVVSALPPPARDPTPLSLLPFCRLKVLELRGCDLSTSAAKGLLELRHTLEKIICHNSTNALRHVFASRIVEIKDSPQW 167 (937)
Q Consensus 88 ~Lk~LdLs~N~Is~~iP~sLs~L~~L~~LdLS~N~Ls~~lp~~L~~L~~Ll~LlL~~N~L~~L~~l~~~~i~~l~~l~~l 167 (937)
.++.|+|++|.+.+.+|..|+.+++|+.|+|++|.+.+.+|..+..+
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l--------------------------------- 465 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSI--------------------------------- 465 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCC---------------------------------
Confidence 47889999999999999999999999999999999998888766544
Q ss_pred CCccEEEccCCcCc-cchhhcCCCCCCcEEECCCCCCCC-Cc-CcCC-CCCCCEEECCCCC
Q 002315 168 NRLSFVSCSCNRLV-IMDESLQLLPAVETLDLSRNKFAK-VD-NLRK-CVNLKHLDLGFNN 224 (937)
Q Consensus 168 ~~L~~L~Ls~N~Ls-~LP~sL~~L~~L~~LdLs~N~L~~-l~-~L~~-L~~L~~LdLS~N~ 224 (937)
++|+.|+|++|.+. .+|..++.+++|+.|+|++|.+.+ +| .+.. +.++..+++.+|.
T Consensus 466 ~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~N~l~g~iP~~l~~~~~~~~~l~~~~N~ 526 (623)
T PLN03150 466 TSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVPAALGGRLLHRASFNFTDNA 526 (623)
T ss_pred CCCCEEECCCCCCCCCCchHHhcCCCCCEEECcCCcccccCChHHhhccccCceEEecCCc
Confidence 46889999999998 788899999999999999999885 34 4443 2466788888885
No 43
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.25 E-value=6.5e-07 Score=75.69 Aligned_cols=59 Identities=36% Similarity=0.459 Sum_probs=39.7
Q ss_pred cccceecccCccccccc--cCCCCCCCCEEEccCCCCCCCchhhhhcCCCCCCEEEecCCCC
Q 002315 236 CHIVKLVLRNNALTTLR--GIENLKSLEGLDISYNIISTFSELEFLASLPYLLNLWLEGNPL 295 (937)
Q Consensus 236 ~sL~~L~Ls~N~Lt~Lp--~L~~L~sL~~LdLS~N~Ls~l~~l~~L~~L~sL~~L~Ls~NpL 295 (937)
|+|++|+|++|+|+.++ .|..+++|++|+|++|.|+.+++ ..+..+++|+.|++++|+|
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~-~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPP-DAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEET-TTTTTSTTESEEEETSSSB
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCH-HHHcCCCCCCEEeCcCCcC
Confidence 35666666666666664 56667777777777777776654 5566777777777777764
No 44
>PLN03150 hypothetical protein; Provisional
Probab=98.24 E-value=1.7e-06 Score=105.45 Aligned_cols=104 Identities=25% Similarity=0.263 Sum_probs=85.6
Q ss_pred CCcEEEeeCCCCCccchhhHhhhhhhhhhhhccCCCcccchhcccchhcccCCCCCCCccEEEccCCcCc-cchhhcCCC
Q 002315 112 RLKVLELRGCDLSTSAAKGLLELRHTLEKIICHNSTNALRHVFASRIVEIKDSPQWNRLSFVSCSCNRLV-IMDESLQLL 190 (937)
Q Consensus 112 ~L~~LdLS~N~Ls~~lp~~L~~L~~Ll~LlL~~N~L~~L~~l~~~~i~~l~~l~~l~~L~~L~Ls~N~Ls-~LP~sL~~L 190 (937)
.++.|+|++|.+.+.+|..+..+ ++|+.|+|++|.|. .+|..+..+
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L---------------------------------~~L~~L~Ls~N~l~g~iP~~~~~l 465 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKL---------------------------------RHLQSINLSGNSIRGNIPPSLGSI 465 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCC---------------------------------CCCCEEECCCCcccCcCChHHhCC
Confidence 48899999999998888766544 47899999999998 889999999
Q ss_pred CCCcEEECCCCCCCC-Cc-CcCCCCCCCEEECCCCCCCC-cccccc-cccccceecccCccc
Q 002315 191 PAVETLDLSRNKFAK-VD-NLRKCVNLKHLDLGFNNLRS-IAAFSE-VSCHIVKLVLRNNAL 248 (937)
Q Consensus 191 ~~L~~LdLs~N~L~~-l~-~L~~L~~L~~LdLS~N~Lt~-L~~l~~-~l~sL~~L~Ls~N~L 248 (937)
++|+.|+|++|.+.+ +| .+..+++|+.|+|++|.+++ +|.... .+.++..+++.+|..
T Consensus 466 ~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~N~l~g~iP~~l~~~~~~~~~l~~~~N~~ 527 (623)
T PLN03150 466 TSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVPAALGGRLLHRASFNFTDNAG 527 (623)
T ss_pred CCCCEEECCCCCCCCCCchHHhcCCCCCEEECcCCcccccCChHHhhccccCceEEecCCcc
Confidence 999999999999986 44 68999999999999999985 454332 234667888888853
No 45
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.14 E-value=1.4e-06 Score=73.55 Aligned_cols=58 Identities=38% Similarity=0.492 Sum_probs=45.7
Q ss_pred CCccEEEccCCcCccchh-hcCCCCCCcEEECCCCCCCCCc--CcCCCCCCCEEECCCCCC
Q 002315 168 NRLSFVSCSCNRLVIMDE-SLQLLPAVETLDLSRNKFAKVD--NLRKCVNLKHLDLGFNNL 225 (937)
Q Consensus 168 ~~L~~L~Ls~N~Ls~LP~-sL~~L~~L~~LdLs~N~L~~l~--~L~~L~~L~~LdLS~N~L 225 (937)
++|++|++++|+|+.+|. .|..+++|++|+|++|.|+.++ .|..+++|++|++++|+|
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 367888888888887775 6777888888888888888764 678888888888888865
No 46
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=98.02 E-value=6.1e-06 Score=85.76 Aligned_cols=124 Identities=23% Similarity=0.275 Sum_probs=98.0
Q ss_pred cEEEccCCcCccchhhcC-CCCCCcEEECCCCCCCCCcCcCCCCCCCEEECCCCCCCCccc-ccccccccceecccCccc
Q 002315 171 SFVSCSCNRLVIMDESLQ-LLPAVETLDLSRNKFAKVDNLRKCVNLKHLDLGFNNLRSIAA-FSEVSCHIVKLVLRNNAL 248 (937)
Q Consensus 171 ~~L~Ls~N~Ls~LP~sL~-~L~~L~~LdLs~N~L~~l~~L~~L~~L~~LdLS~N~Lt~L~~-l~~~l~sL~~L~Ls~N~L 248 (937)
+.++|.+.++..+.. ++ .+.+...+||+.|.|..++.|..++.|.+|.|++|+|+.|.+ +...+++|..|.|.+|.|
T Consensus 22 ~e~~LR~lkip~ien-lg~~~d~~d~iDLtdNdl~~l~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi 100 (233)
T KOG1644|consen 22 RELDLRGLKIPVIEN-LGATLDQFDAIDLTDNDLRKLDNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSI 100 (233)
T ss_pred cccccccccccchhh-ccccccccceecccccchhhcccCCCccccceEEecCCcceeeccchhhhccccceEEecCcch
Confidence 455566665554422 22 244678899999999999999999999999999999999876 445678999999999988
Q ss_pred ccc---ccCCCCCCCCEEEccCCCCCCCchh--hhhcCCCCCCEEEecCCCC
Q 002315 249 TTL---RGIENLKSLEGLDISYNIISTFSEL--EFLASLPYLLNLWLEGNPL 295 (937)
Q Consensus 249 t~L---p~L~~L~sL~~LdLS~N~Ls~l~~l--~~L~~L~sL~~L~Ls~NpL 295 (937)
..+ ..+..||.|++|.+-+|.+...... -.+..+|+|+.|+..+-..
T Consensus 101 ~~l~dl~pLa~~p~L~~Ltll~Npv~~k~~YR~yvl~klp~l~~LDF~kVt~ 152 (233)
T KOG1644|consen 101 QELGDLDPLASCPKLEYLTLLGNPVEHKKNYRLYVLYKLPSLRTLDFQKVTR 152 (233)
T ss_pred hhhhhcchhccCCccceeeecCCchhcccCceeEEEEecCcceEeehhhhhH
Confidence 775 5788999999999999999875432 3467899999999876543
No 47
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.00 E-value=5.1e-06 Score=90.40 Aligned_cols=203 Identities=22% Similarity=0.202 Sum_probs=115.5
Q ss_pred cccccCCCCC--cchHHHHHhcCCCCCcEEEccCCCCCCCCCCCCCCCCCCcEEEeeCCCCCc-cchhhHhhhhhhhhhh
Q 002315 65 AYVSDLGDHR--ALEQLRRILKLLTSLKVVSALPPPARDPTPLSLLPFCRLKVLELRGCDLST-SAAKGLLELRHTLEKI 141 (937)
Q Consensus 65 l~vLdLs~n~--~le~Lp~~L~~L~~Lk~LdLs~N~Is~~iP~sLs~L~~L~~LdLS~N~Ls~-~lp~~L~~L~~Ll~Ll 141 (937)
+..+||.+|. .|.++..++.+||.|+.|+|+.|.+...+-.--..+.+|+.|-|.+..+.- .....+..++.+.++.
T Consensus 73 v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~vtelH 152 (418)
T KOG2982|consen 73 VKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKVTELH 152 (418)
T ss_pred hhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhhhhhh
Confidence 4457777764 588899999999999999999999875543222567899999999988863 2334566777778888
Q ss_pred hccCCCcccchhcccchhcccCCCCCCCccEEEccCCcCccchhh---cCCCCCCcEEECCCCCCCCCcCcCCCCCCCEE
Q 002315 142 ICHNSTNALRHVFASRIVEIKDSPQWNRLSFVSCSCNRLVIMDES---LQLLPAVETLDLSRNKFAKVDNLRKCVNLKHL 218 (937)
Q Consensus 142 L~~N~L~~L~~l~~~~i~~l~~l~~l~~L~~L~Ls~N~Ls~LP~s---L~~L~~L~~LdLs~N~L~~l~~L~~L~~L~~L 218 (937)
++.|+ ++.+++..|.+..+... +..++.+..++++-|++.. -++++..+
T Consensus 153 mS~N~-----------------------~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r-----~Fpnv~sv 204 (418)
T KOG2982|consen 153 MSDNS-----------------------LRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSR-----IFPNVNSV 204 (418)
T ss_pred hccch-----------------------hhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHh-----hcccchhe
Confidence 87774 23333333333321110 1111112222222222211 12444455
Q ss_pred ECCCCCCCCccc--ccccccccceecccCcccccc---ccCCCCCCCCEEEccCCCCCCCc-----hhhhhcCCCCCCEE
Q 002315 219 DLGFNNLRSIAA--FSEVSCHIVKLVLRNNALTTL---RGIENLKSLEGLDISYNIISTFS-----ELEFLASLPYLLNL 288 (937)
Q Consensus 219 dLS~N~Lt~L~~--l~~~l~sL~~L~Ls~N~Lt~L---p~L~~L~sL~~LdLS~N~Ls~l~-----~l~~L~~L~sL~~L 288 (937)
.+..|.|..... .+..+|.+-.|+|+.|+|... ..+..++.|.-|.+++|.|.+-- ..-.++.+++++.|
T Consensus 205 ~v~e~PlK~~s~ek~se~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d~l~~~err~llIaRL~~v~vL 284 (418)
T KOG2982|consen 205 FVCEGPLKTESSEKGSEPFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLSDPLRGGERRFLLIARLTKVQVL 284 (418)
T ss_pred eeecCcccchhhcccCCCCCcchhhhhcccccccHHHHHHHcCCchhheeeccCCcccccccCCcceEEEEeeccceEEe
Confidence 555555544332 222345555666666666553 35666677777777777665411 01124667777776
Q ss_pred EecCCCCCC
Q 002315 289 WLEGNPLCC 297 (937)
Q Consensus 289 ~Ls~NpLt~ 297 (937)
+=+ .|+.
T Consensus 285 NGs--kIss 291 (418)
T KOG2982|consen 285 NGS--KISS 291 (418)
T ss_pred cCc--ccch
Confidence 533 6653
No 48
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=97.93 E-value=2.3e-06 Score=107.41 Aligned_cols=205 Identities=18% Similarity=0.154 Sum_probs=123.3
Q ss_pred HHHhcCCCCCcEEEccCCCCCCCCCCCCCCCCCCcEEEeeCCCCCccchhhHhhhhhhhhhhhccCC-Ccccchhcccch
Q 002315 80 RRILKLLTSLKVVSALPPPARDPTPLSLLPFCRLKVLELRGCDLSTSAAKGLLELRHTLEKIICHNS-TNALRHVFASRI 158 (937)
Q Consensus 80 p~~L~~L~~Lk~LdLs~N~Is~~iP~sLs~L~~L~~LdLS~N~Ls~~lp~~L~~L~~Ll~LlL~~N~-L~~L~~l~~~~i 158 (937)
...|..+|.|+.|||++|.-.+.+|..++.|-+|++|+|++..+.. +|.++.+|+.|++|++..+. +..++++
T Consensus 564 ~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~~-LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i----- 637 (889)
T KOG4658|consen 564 GEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGISH-LPSGLGNLKKLIYLNLEVTGRLESIPGI----- 637 (889)
T ss_pred HHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCccc-cchHHHHHHhhheeccccccccccccch-----
Confidence 4468889999999999988778899999999999999999999974 89999999999999887663 1222111
Q ss_pred hcccCCCCCCCccEEEccCCcCc---cchhhcCCCCCCcEEECCCCCC---------------------------CCCcC
Q 002315 159 VEIKDSPQWNRLSFVSCSCNRLV---IMDESLQLLPAVETLDLSRNKF---------------------------AKVDN 208 (937)
Q Consensus 159 ~~l~~l~~l~~L~~L~Ls~N~Ls---~LP~sL~~L~~L~~LdLs~N~L---------------------------~~l~~ 208 (937)
...+.+|++|.+..-... ..-..+..+.+|+.|....... +.+..
T Consensus 638 -----~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~~~s~~~~e~l~~~~~L~~~~~~l~~~~~~~~~~~~~ 712 (889)
T KOG4658|consen 638 -----LLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSITISSVLLLEDLLGMTRLRSLLQSLSIEGCSKRTLISS 712 (889)
T ss_pred -----hhhcccccEEEeeccccccchhhHHhhhcccchhhheeecchhHhHhhhhhhHHHHHHhHhhhhcccccceeecc
Confidence 123567777777554322 1112233444444433322211 11235
Q ss_pred cCCCCCCCEEECCCCCCCCccc-c-----ccc-ccccceecccCc-cccccccCCCCCCCCEEEccCCCCCCCchhhhhc
Q 002315 209 LRKCVNLKHLDLGFNNLRSIAA-F-----SEV-SCHIVKLVLRNN-ALTTLRGIENLKSLEGLDISYNIISTFSELEFLA 280 (937)
Q Consensus 209 L~~L~~L~~LdLS~N~Lt~L~~-l-----~~~-l~sL~~L~Ls~N-~Lt~Lp~L~~L~sL~~LdLS~N~Ls~l~~l~~L~ 280 (937)
+..+.+|+.|.+.++.+..+.. . ... ++++..+...++ .+..+.+....++|+.|.+........+. +...
T Consensus 713 ~~~l~~L~~L~i~~~~~~e~~~~~~~~~~~~~~f~~l~~~~~~~~~~~r~l~~~~f~~~L~~l~l~~~~~~e~~i-~~~k 791 (889)
T KOG4658|consen 713 LGSLGNLEELSILDCGISEIVIEWEESLIVLLCFPNLSKVSILNCHMLRDLTWLLFAPHLTSLSLVSCRLLEDII-PKLK 791 (889)
T ss_pred cccccCcceEEEEcCCCchhhcccccccchhhhHHHHHHHHhhccccccccchhhccCcccEEEEecccccccCC-CHHH
Confidence 6677888888888887764321 1 001 233444333333 22223334456788888888776554332 3344
Q ss_pred CCCCCCEEEecCCCCC
Q 002315 281 SLPYLLNLWLEGNPLC 296 (937)
Q Consensus 281 ~L~sL~~L~Ls~NpLt 296 (937)
.+..+..+-+..+.+.
T Consensus 792 ~~~~l~~~i~~f~~~~ 807 (889)
T KOG4658|consen 792 ALLELKELILPFNKLE 807 (889)
T ss_pred HhhhcccEEecccccc
Confidence 4445554444444443
No 49
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.87 E-value=9.2e-07 Score=86.88 Aligned_cols=109 Identities=19% Similarity=0.244 Sum_probs=57.4
Q ss_pred CCCCCCEEECCCCCCCCccc-ccccccccceecccCccccccc-cCCCCCCCCEEEccCCCCCCCchhhhhcCCCCCCEE
Q 002315 211 KCVNLKHLDLGFNNLRSIAA-FSEVSCHIVKLVLRNNALTTLR-GIENLKSLEGLDISYNIISTFSELEFLASLPYLLNL 288 (937)
Q Consensus 211 ~L~~L~~LdLS~N~Lt~L~~-l~~~l~sL~~L~Ls~N~Lt~Lp-~L~~L~sL~~LdLS~N~Ls~l~~l~~L~~L~sL~~L 288 (937)
....|+..+|++|.+..+|+ +...++.++.|+|++|.|..+| .+..++.|+.|++++|.|...+ ..+..|.+|-.|
T Consensus 51 ~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr~lNl~~N~l~~~p--~vi~~L~~l~~L 128 (177)
T KOG4579|consen 51 KGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEISDVPEELAAMPALRSLNLRFNPLNAEP--RVIAPLIKLDML 128 (177)
T ss_pred CCceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhhhchHHHhhhHHhhhcccccCccccch--HHHHHHHhHHHh
Confidence 33445555556665555554 2223445666666666666665 5666666666666666666655 233446666666
Q ss_pred EecCCCCCCCcchhhhHhhhcCCCceeccCCccCChh
Q 002315 289 WLEGNPLCCSRWYRAQVFSYFAHPAKLKVDGKEISTR 325 (937)
Q Consensus 289 ~Ls~NpLt~~~~~r~~~~~~l~~L~~L~LdgN~Is~~ 325 (937)
+..+|.+...+ + . +-.-..+-...|..+++...
T Consensus 129 ds~~na~~eid-~--d-l~~s~~~al~~lgnepl~~~ 161 (177)
T KOG4579|consen 129 DSPENARAEID-V--D-LFYSSLPALIKLGNEPLGDE 161 (177)
T ss_pred cCCCCccccCc-H--H-HhccccHHHHHhcCCccccc
Confidence 66666554333 1 1 11222334445555555543
No 50
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=97.85 E-value=1.2e-05 Score=101.11 Aligned_cols=179 Identities=16% Similarity=0.181 Sum_probs=123.2
Q ss_pred CCCCCcEEEccCCC--CCCCCCCCCCCCCCCcEEEeeCCCCCccchhhHhhhhhhhhhhhccCCCcccchhcccchhccc
Q 002315 85 LLTSLKVVSALPPP--ARDPTPLSLLPFCRLKVLELRGCDLSTSAAKGLLELRHTLEKIICHNSTNALRHVFASRIVEIK 162 (937)
Q Consensus 85 ~L~~Lk~LdLs~N~--Is~~iP~sLs~L~~L~~LdLS~N~Ls~~lp~~L~~L~~Ll~LlL~~N~L~~L~~l~~~~i~~l~ 162 (937)
.+++|++|-+..|. +....+..|..++.|++|||++|.=.+.+|..++.|-+|+.|++.+..+..+|..+
T Consensus 543 ~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~~LP~~l-------- 614 (889)
T KOG4658|consen 543 ENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGISHLPSGL-------- 614 (889)
T ss_pred CCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCccccchHH--------
Confidence 45689999998886 44444445888999999999998877789999999999999999998887777644
Q ss_pred CCCCCCCccEEEccCCcC-ccchhhcCCCCCCcEEECCCCCCCC----CcCcCCCCCCCEEECCCCCC---CCccccccc
Q 002315 163 DSPQWNRLSFVSCSCNRL-VIMDESLQLLPAVETLDLSRNKFAK----VDNLRKCVNLKHLDLGFNNL---RSIAAFSEV 234 (937)
Q Consensus 163 ~l~~l~~L~~L~Ls~N~L-s~LP~sL~~L~~L~~LdLs~N~L~~----l~~L~~L~~L~~LdLS~N~L---t~L~~l~~~ 234 (937)
..++.|.+|++..+.- ..+|..+..|.+|++|.+....... +..+..+.+|+.|....... ..+......
T Consensus 615 --~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~~~s~~~~e~l~~~~~L 692 (889)
T KOG4658|consen 615 --GNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSITISSVLLLEDLLGMTRL 692 (889)
T ss_pred --HHHHhhheeccccccccccccchhhhcccccEEEeeccccccchhhHHhhhcccchhhheeecchhHhHhhhhhhHHH
Confidence 3567899999998754 4556667779999999997765222 23455666666666544332 111111111
Q ss_pred ccccceecccCccccc-cccCCCCCCCCEEEccCCCCCCC
Q 002315 235 SCHIVKLVLRNNALTT-LRGIENLKSLEGLDISYNIISTF 273 (937)
Q Consensus 235 l~sL~~L~Ls~N~Lt~-Lp~L~~L~sL~~LdLS~N~Ls~l 273 (937)
....+.+.+.++.... +..+..+.+|+.|.+.++.+..+
T Consensus 693 ~~~~~~l~~~~~~~~~~~~~~~~l~~L~~L~i~~~~~~e~ 732 (889)
T KOG4658|consen 693 RSLLQSLSIEGCSKRTLISSLGSLGNLEELSILDCGISEI 732 (889)
T ss_pred HHHhHhhhhcccccceeecccccccCcceEEEEcCCCchh
Confidence 1233344444443333 34778888888888888887653
No 51
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=97.74 E-value=2.2e-05 Score=84.62 Aligned_cols=218 Identities=17% Similarity=0.125 Sum_probs=131.8
Q ss_pred HHhcCCCCCcEEEccCCCCCCCC----CCCCCCCCCCcEEEeeCCCCCc---cchhhHhhhhhhhhhhhccCCCcccchh
Q 002315 81 RILKLLTSLKVVSALPPPARDPT----PLSLLPFCRLKVLELRGCDLST---SAAKGLLELRHTLEKIICHNSTNALRHV 153 (937)
Q Consensus 81 ~~L~~L~~Lk~LdLs~N~Is~~i----P~sLs~L~~L~~LdLS~N~Ls~---~lp~~L~~L~~Ll~LlL~~N~L~~L~~l 153 (937)
..+..+..++.++|++|.|.... ...+.+-.+|+..+++.-...- .++..+.-|
T Consensus 24 eel~~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~L------------------- 84 (388)
T COG5238 24 EELEMMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVML------------------- 84 (388)
T ss_pred HHHHhhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHH-------------------
Confidence 34455788888888888885432 2334555777777776643321 222222111
Q ss_pred cccchhcccCCCCCCCccEEEccCCcCc-cch----hhcCCCCCCcEEECCCCCCCCCc---------------CcCCCC
Q 002315 154 FASRIVEIKDSPQWNRLSFVSCSCNRLV-IMD----ESLQLLPAVETLDLSRNKFAKVD---------------NLRKCV 213 (937)
Q Consensus 154 ~~~~i~~l~~l~~l~~L~~L~Ls~N~Ls-~LP----~sL~~L~~L~~LdLs~N~L~~l~---------------~L~~L~ 213 (937)
++.+.+|++|+.++|+.|.+. ..| +.+..-+.|.+|.|++|.+..+. ....-|
T Consensus 85 -------l~aLlkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp 157 (388)
T COG5238 85 -------LKALLKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKP 157 (388)
T ss_pred -------HHHHhcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCC
Confidence 112246778888888888776 333 34566778888888888776542 123447
Q ss_pred CCCEEECCCCCCCCccc-----ccccccccceecccCccccc--c-----ccCCCCCCCCEEEccCCCCCCCchh---hh
Q 002315 214 NLKHLDLGFNNLRSIAA-----FSEVSCHIVKLVLRNNALTT--L-----RGIENLKSLEGLDISYNIISTFSEL---EF 278 (937)
Q Consensus 214 ~L~~LdLS~N~Lt~L~~-----l~~~l~sL~~L~Ls~N~Lt~--L-----p~L~~L~sL~~LdLS~N~Ls~l~~l---~~ 278 (937)
.|+......|++..-+. ....-..|+.+.+..|.|.. + -.+..+.+|+.|||..|-++..... ..
T Consensus 158 ~Le~vicgrNRlengs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~a 237 (388)
T COG5238 158 KLEVVICGRNRLENGSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADA 237 (388)
T ss_pred CceEEEeccchhccCcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHH
Confidence 78888888888775442 11112467788888887754 1 2456677888888888877653321 33
Q ss_pred hcCCCCCCEEEecCCCCCCCc---chhhhHhhhcCCCceeccCCccCCh
Q 002315 279 LASLPYLLNLWLEGNPLCCSR---WYRAQVFSYFAHPAKLKVDGKEIST 324 (937)
Q Consensus 279 L~~L~sL~~L~Ls~NpLt~~~---~~r~~~~~~l~~L~~L~LdgN~Is~ 324 (937)
+..++.|+.|.+..|-++... .++...-..+|+|..|.++.|.+..
T Consensus 238 l~~W~~lrEL~lnDClls~~G~~~v~~~f~e~~~p~l~~L~~~Yne~~~ 286 (388)
T COG5238 238 LCEWNLLRELRLNDCLLSNEGVKSVLRRFNEKFVPNLMPLPGDYNERRG 286 (388)
T ss_pred hcccchhhhccccchhhccccHHHHHHHhhhhcCCCccccccchhhhcC
Confidence 455666788888777776441 1222222345666777777776543
No 52
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=97.74 E-value=7.7e-07 Score=96.64 Aligned_cols=174 Identities=17% Similarity=0.112 Sum_probs=84.2
Q ss_pred CCCcEEEeeCCCCCcc-chhhHhhhhhhhhhhhccCCCcccchhcccchhcccCCCCCCCccEEEccCC-cCcc--chhh
Q 002315 111 CRLKVLELRGCDLSTS-AAKGLLELRHTLEKIICHNSTNALRHVFASRIVEIKDSPQWNRLSFVSCSCN-RLVI--MDES 186 (937)
Q Consensus 111 ~~L~~LdLS~N~Ls~~-lp~~L~~L~~Ll~LlL~~N~L~~L~~l~~~~i~~l~~l~~l~~L~~L~Ls~N-~Ls~--LP~s 186 (937)
+.|++|||++..|+.. +-.-+....+|..+.+.++.+.. -+.+.+ .+-.+|+.|+|+.+ .++. +.--
T Consensus 185 sRlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD---~I~~~i------AkN~~L~~lnlsm~sG~t~n~~~ll 255 (419)
T KOG2120|consen 185 SRLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDD---PIVNTI------AKNSNLVRLNLSMCSGFTENALQLL 255 (419)
T ss_pred hhhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCc---HHHHHH------hccccceeeccccccccchhHHHHH
Confidence 4699999999988742 22233444444444444443221 111111 13345666666543 3441 2223
Q ss_pred cCCCCCCcEEECCCCCCCCC--c-CcCCC-CCCCEEECCCCC----CCCcccccccccccceecccCc-cccc--cccCC
Q 002315 187 LQLLPAVETLDLSRNKFAKV--D-NLRKC-VNLKHLDLGFNN----LRSIAAFSEVSCHIVKLVLRNN-ALTT--LRGIE 255 (937)
Q Consensus 187 L~~L~~L~~LdLs~N~L~~l--~-~L~~L-~~L~~LdLS~N~----Lt~L~~l~~~l~sL~~L~Ls~N-~Lt~--Lp~L~ 255 (937)
+..++.|..|+|+.+.+... . .+.+. ++|+.|+|++.. ...+..+...+|+|..|||++| .|+. +..+.
T Consensus 256 ~~scs~L~~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~ 335 (419)
T KOG2120|consen 256 LSSCSRLDELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFF 335 (419)
T ss_pred HHhhhhHhhcCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHH
Confidence 45556666666666555431 1 11111 455566666542 1122333444566666666665 2332 23455
Q ss_pred CCCCCCEEEccCCCCCCCchhhhhcCCCCCCEEEecCC
Q 002315 256 NLKSLEGLDISYNIISTFSELEFLASLPYLLNLWLEGN 293 (937)
Q Consensus 256 ~L~sL~~LdLS~N~Ls~l~~l~~L~~L~sL~~L~Ls~N 293 (937)
+++.|++|.|+.+..-.-..+-.+...|.|.+|++.|.
T Consensus 336 kf~~L~~lSlsRCY~i~p~~~~~l~s~psl~yLdv~g~ 373 (419)
T KOG2120|consen 336 KFNYLQHLSLSRCYDIIPETLLELNSKPSLVYLDVFGC 373 (419)
T ss_pred hcchheeeehhhhcCCChHHeeeeccCcceEEEEeccc
Confidence 56666666666655433222223455566666665554
No 53
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=97.69 E-value=1.4e-05 Score=86.16 Aligned_cols=172 Identities=21% Similarity=0.155 Sum_probs=103.3
Q ss_pred HHHHhcCCCCCcEEEccCCCCCCCCCCC----CCCCCCCcEEEeeCCCCCccchhhHhh-hhhhhhhhhccCCCcccchh
Q 002315 79 LRRILKLLTSLKVVSALPPPARDPTPLS----LLPFCRLKVLELRGCDLSTSAAKGLLE-LRHTLEKIICHNSTNALRHV 153 (937)
Q Consensus 79 Lp~~L~~L~~Lk~LdLs~N~Is~~iP~s----Ls~L~~L~~LdLS~N~Ls~~lp~~L~~-L~~Ll~LlL~~N~L~~L~~l 153 (937)
+...+-+||+|+.++|+.|.|....|.. ++.-+.|.+|.|++|.+....-.-++. |.+ +..|.
T Consensus 84 Ll~aLlkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~-----la~nK------- 151 (388)
T COG5238 84 LLKALLKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFH-----LAYNK------- 151 (388)
T ss_pred HHHHHhcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHH-----HHHHh-------
Confidence 4456778899999999999987666654 455688999999999885322222221 111 11110
Q ss_pred cccchhcccCCCCCCCccEEEccCCcCccchh-----hcCCCCCCcEEECCCCCCCC--Cc-----CcCCCCCCCEEECC
Q 002315 154 FASRIVEIKDSPQWNRLSFVSCSCNRLVIMDE-----SLQLLPAVETLDLSRNKFAK--VD-----NLRKCVNLKHLDLG 221 (937)
Q Consensus 154 ~~~~i~~l~~l~~l~~L~~L~Ls~N~Ls~LP~-----sL~~L~~L~~LdLs~N~L~~--l~-----~L~~L~~L~~LdLS 221 (937)
....-+.|+.+.+..|++..-|. .+..-.+|+.+.+..|.|.. +. .+..+.+|+.|+|.
T Consensus 152 ---------Kaa~kp~Le~vicgrNRlengs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlq 222 (388)
T COG5238 152 ---------KAADKPKLEVVICGRNRLENGSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQ 222 (388)
T ss_pred ---------hhccCCCceEEEeccchhccCcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeecc
Confidence 11234578889999998874443 23334578888888887764 21 44556788888888
Q ss_pred CCCCCCccc-----ccccccccceecccCcccccc------ccC--CCCCCCCEEEccCCCCC
Q 002315 222 FNNLRSIAA-----FSEVSCHIVKLVLRNNALTTL------RGI--ENLKSLEGLDISYNIIS 271 (937)
Q Consensus 222 ~N~Lt~L~~-----l~~~l~sL~~L~Ls~N~Lt~L------p~L--~~L~sL~~LdLS~N~Ls 271 (937)
+|-++.... ....++.|+.|.+..|-++.- ..+ ...|+|..|-+.+|.+.
T Consensus 223 DNtft~~gS~~La~al~~W~~lrEL~lnDClls~~G~~~v~~~f~e~~~p~l~~L~~~Yne~~ 285 (388)
T COG5238 223 DNTFTLEGSRYLADALCEWNLLRELRLNDCLLSNEGVKSVLRRFNEKFVPNLMPLPGDYNERR 285 (388)
T ss_pred ccchhhhhHHHHHHHhcccchhhhccccchhhccccHHHHHHHhhhhcCCCccccccchhhhc
Confidence 887764322 222345566777766666541 111 22355555555555443
No 54
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.62 E-value=4.8e-06 Score=81.95 Aligned_cols=130 Identities=22% Similarity=0.207 Sum_probs=100.2
Q ss_pred CccEEEccCCcCccchhh---cCCCCCCcEEECCCCCCCCCc-CcC-CCCCCCEEECCCCCCCCcccccccccccceecc
Q 002315 169 RLSFVSCSCNRLVIMDES---LQLLPAVETLDLSRNKFAKVD-NLR-KCVNLKHLDLGFNNLRSIAAFSEVSCHIVKLVL 243 (937)
Q Consensus 169 ~L~~L~Ls~N~Ls~LP~s---L~~L~~L~~LdLs~N~L~~l~-~L~-~L~~L~~LdLS~N~Lt~L~~l~~~l~sL~~L~L 243 (937)
.+..++|+.+.|..|++. +.....|+..+|++|.+..+| .|. ..+.++.|+|++|.|..+|.....++.|+.|++
T Consensus 28 E~h~ldLssc~lm~i~davy~l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr~lNl 107 (177)
T KOG4579|consen 28 ELHFLDLSSCQLMYIADAVYMLSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEISDVPEELAAMPALRSLNL 107 (177)
T ss_pred HhhhcccccchhhHHHHHHHHHhCCceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhhhchHHHhhhHHhhhccc
Confidence 466788899988866654 455667888899999999876 443 446899999999999999987778899999999
Q ss_pred cCccccccc-cCCCCCCCCEEEccCCCCCCCchhhhhcCCCCCCEEEecCCCCCCCcc
Q 002315 244 RNNALTTLR-GIENLKSLEGLDISYNIISTFSELEFLASLPYLLNLWLEGNPLCCSRW 300 (937)
Q Consensus 244 s~N~Lt~Lp-~L~~L~sL~~LdLS~N~Ls~l~~l~~L~~L~sL~~L~Ls~NpLt~~~~ 300 (937)
+.|.|...| .+..|.+|-.|+...|.+..++- +.+ .-..+-...+.++|+...+.
T Consensus 108 ~~N~l~~~p~vi~~L~~l~~Lds~~na~~eid~-dl~-~s~~~al~~lgnepl~~~~~ 163 (177)
T KOG4579|consen 108 RFNPLNAEPRVIAPLIKLDMLDSPENARAEIDV-DLF-YSSLPALIKLGNEPLGDETK 163 (177)
T ss_pred ccCccccchHHHHHHHhHHHhcCCCCccccCcH-HHh-ccccHHHHHhcCCcccccCc
Confidence 999998875 66668999999999999998874 322 22233334557888876653
No 55
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.57 E-value=8e-05 Score=59.52 Aligned_cols=41 Identities=32% Similarity=0.436 Sum_probs=26.2
Q ss_pred CccEEEccCCcCccchhhcCCCCCCcEEECCCCCCCCCcCc
Q 002315 169 RLSFVSCSCNRLVIMDESLQLLPAVETLDLSRNKFAKVDNL 209 (937)
Q Consensus 169 ~L~~L~Ls~N~Ls~LP~sL~~L~~L~~LdLs~N~L~~l~~L 209 (937)
+|++|++++|+|+.+|..+..|++|+.|++++|+|+.++.+
T Consensus 2 ~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i~~i~~l 42 (44)
T PF12799_consen 2 NLEELDLSNNQITDLPPELSNLPNLETLNLSNNPISDISPL 42 (44)
T ss_dssp T-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCCSBEGGG
T ss_pred cceEEEccCCCCcccCchHhCCCCCCEEEecCCCCCCCcCC
Confidence 56677777777777766666777777777777766665444
No 56
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.53 E-value=5.8e-05 Score=81.30 Aligned_cols=115 Identities=26% Similarity=0.254 Sum_probs=70.8
Q ss_pred CCCCCcEEECCCCCCCCCcCcCCCCCCCEEECCCCCCCCcccccccccccceecccCccccccc-cCCCCCCCCEEEccC
Q 002315 189 LLPAVETLDLSRNKFAKVDNLRKCVNLKHLDLGFNNLRSIAAFSEVSCHIVKLVLRNNALTTLR-GIENLKSLEGLDISY 267 (937)
Q Consensus 189 ~L~~L~~LdLs~N~L~~l~~L~~L~~L~~LdLS~N~Lt~L~~l~~~l~sL~~L~Ls~N~Lt~Lp-~L~~L~sL~~LdLS~ 267 (937)
.+..|+.|.+.+..++.+..+..|++|+.|.++.|.+..... ++ -...+|+|++|+|+.
T Consensus 41 ~~~~le~ls~~n~gltt~~~~P~Lp~LkkL~lsdn~~~~~~~--------------------l~vl~e~~P~l~~l~ls~ 100 (260)
T KOG2739|consen 41 EFVELELLSVINVGLTTLTNFPKLPKLKKLELSDNYRRVSGG--------------------LEVLAEKAPNLKVLNLSG 100 (260)
T ss_pred cccchhhhhhhccceeecccCCCcchhhhhcccCCccccccc--------------------ceehhhhCCceeEEeecC
Confidence 344555555555566665566666666666666663321111 11 123346677777777
Q ss_pred CCCCCCchhhhhcCCCCCCEEEecCCCCCCCcchhhhHhhhcCCCceeccCCccCChh
Q 002315 268 NIISTFSELEFLASLPYLLNLWLEGNPLCCSRWYRAQVFSYFAHPAKLKVDGKEISTR 325 (937)
Q Consensus 268 N~Ls~l~~l~~L~~L~sL~~L~Ls~NpLt~~~~~r~~~~~~l~~L~~L~LdgN~Is~~ 325 (937)
|+|..+..+..+..+.+|..|++.+|+.+....||..+|..++.|. +||+..+...
T Consensus 101 Nki~~lstl~pl~~l~nL~~Ldl~n~~~~~l~dyre~vf~ll~~L~--~LD~~dv~~~ 156 (260)
T KOG2739|consen 101 NKIKDLSTLRPLKELENLKSLDLFNCSVTNLDDYREKVFLLLPSLK--YLDGCDVDGE 156 (260)
T ss_pred CccccccccchhhhhcchhhhhcccCCccccccHHHHHHHHhhhhc--cccccccCCc
Confidence 7766655555567777888888888888877788888887775444 5566655433
No 57
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.45 E-value=0.0001 Score=58.85 Aligned_cols=38 Identities=42% Similarity=0.531 Sum_probs=18.2
Q ss_pred ccceecccCcccccccc-CCCCCCCCEEEccCCCCCCCc
Q 002315 237 HIVKLVLRNNALTTLRG-IENLKSLEGLDISYNIISTFS 274 (937)
Q Consensus 237 sL~~L~Ls~N~Lt~Lp~-L~~L~sL~~LdLS~N~Ls~l~ 274 (937)
+|++|+|++|+|+.++. +..|++|+.|+|++|+|++++
T Consensus 2 ~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i~~i~ 40 (44)
T PF12799_consen 2 NLEELDLSNNQITDLPPELSNLPNLETLNLSNNPISDIS 40 (44)
T ss_dssp T-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCCSBEG
T ss_pred cceEEEccCCCCcccCchHhCCCCCCEEEecCCCCCCCc
Confidence 34555555555555443 555555555555555555443
No 58
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.12 E-value=0.0018 Score=74.87 Aligned_cols=42 Identities=12% Similarity=0.116 Sum_probs=29.1
Q ss_pred hcCCCCCcEEEccCCCCCCCCCCCCCCCCCCcEEEeeCCCCCccch
Q 002315 83 LKLLTSLKVVSALPPPARDPTPLSLLPFCRLKVLELRGCDLSTSAA 128 (937)
Q Consensus 83 L~~L~~Lk~LdLs~N~Is~~iP~sLs~L~~L~~LdLS~N~Ls~~lp 128 (937)
+..+.+++.|++++|.++.. |. + ..+|+.|.+++|.--..+|
T Consensus 48 ~~~~~~l~~L~Is~c~L~sL-P~-L--P~sLtsL~Lsnc~nLtsLP 89 (426)
T PRK15386 48 IEEARASGRLYIKDCDIESL-PV-L--PNELTEITIENCNNLTTLP 89 (426)
T ss_pred HHHhcCCCEEEeCCCCCccc-CC-C--CCCCcEEEccCCCCcccCC
Confidence 55679999999998877654 42 2 2469999998854433344
No 59
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.11 E-value=0.0012 Score=76.41 Aligned_cols=19 Identities=16% Similarity=0.296 Sum_probs=14.4
Q ss_pred CCCCCCCcEEEeeCCCCCc
Q 002315 107 LLPFCRLKVLELRGCDLST 125 (937)
Q Consensus 107 Ls~L~~L~~LdLS~N~Ls~ 125 (937)
+..+.+|+.|++++|.|+.
T Consensus 48 ~~~~~~l~~L~Is~c~L~s 66 (426)
T PRK15386 48 IEEARASGRLYIKDCDIES 66 (426)
T ss_pred HHHhcCCCEEEeCCCCCcc
Confidence 3345788899999998765
No 60
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=96.99 E-value=0.0004 Score=85.58 Aligned_cols=80 Identities=14% Similarity=0.123 Sum_probs=37.7
Q ss_pred CCCccEEEccCCcCc--cchhhcCCCCCCcEEECCCCCCCCCcCcCCCCCCCEEECCCCCCCCccc--ccccccccceec
Q 002315 167 WNRLSFVSCSCNRLV--IMDESLQLLPAVETLDLSRNKFAKVDNLRKCVNLKHLDLGFNNLRSIAA--FSEVSCHIVKLV 242 (937)
Q Consensus 167 l~~L~~L~Ls~N~Ls--~LP~sL~~L~~L~~LdLs~N~L~~l~~L~~L~~L~~LdLS~N~Lt~L~~--l~~~l~sL~~L~ 242 (937)
+|.|+.|.+++-.+. .+-....++|+|..||+|+.+++.+.++++|++|+.|.+.+=.+..-.. ..+.+.+|+.||
T Consensus 147 LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl~GIS~LknLq~L~mrnLe~e~~~~l~~LF~L~~L~vLD 226 (699)
T KOG3665|consen 147 LPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNLSGISRLKNLQVLSMRNLEFESYQDLIDLFNLKKLRVLD 226 (699)
T ss_pred CcccceEEecCceecchhHHHHhhccCccceeecCCCCccCcHHHhccccHHHHhccCCCCCchhhHHHHhcccCCCeee
Confidence 345555555544433 2222344555555555555555555555555555555554433333221 112234555555
Q ss_pred ccCc
Q 002315 243 LRNN 246 (937)
Q Consensus 243 Ls~N 246 (937)
+|..
T Consensus 227 IS~~ 230 (699)
T KOG3665|consen 227 ISRD 230 (699)
T ss_pred cccc
Confidence 5544
No 61
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=96.94 E-value=0.00067 Score=83.63 Aligned_cols=101 Identities=25% Similarity=0.306 Sum_probs=45.6
Q ss_pred CccEEEccCCcCc--cchhhc-CCCCCCcEEECCCCCCCCCc---CcCCCCCCCEEECCCCCCCCcccccccccccceec
Q 002315 169 RLSFVSCSCNRLV--IMDESL-QLLPAVETLDLSRNKFAKVD---NLRKCVNLKHLDLGFNNLRSIAAFSEVSCHIVKLV 242 (937)
Q Consensus 169 ~L~~L~Ls~N~Ls--~LP~sL-~~L~~L~~LdLs~N~L~~l~---~L~~L~~L~~LdLS~N~Lt~L~~l~~~l~sL~~L~ 242 (937)
+|++|++++...- .-|..+ ..+|+|+.|.+++-.+..-+ -..++++|..||+|+..++.+.. ...+++|+.|.
T Consensus 123 nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl~G-IS~LknLq~L~ 201 (699)
T KOG3665|consen 123 NLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNLSG-ISRLKNLQVLS 201 (699)
T ss_pred hhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCcHH-HhccccHHHHh
Confidence 5666666654322 111211 23555666655554443321 23344555555555555544422 22234555555
Q ss_pred ccCcccccc---ccCCCCCCCCEEEccCCCC
Q 002315 243 LRNNALTTL---RGIENLKSLEGLDISYNII 270 (937)
Q Consensus 243 Ls~N~Lt~L---p~L~~L~sL~~LdLS~N~L 270 (937)
+.+=.+..- ..+.+|++|+.||+|..+.
T Consensus 202 mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~ 232 (699)
T KOG3665|consen 202 MRNLEFESYQDLIDLFNLKKLRVLDISRDKN 232 (699)
T ss_pred ccCCCCCchhhHHHHhcccCCCeeecccccc
Confidence 544444331 2344455555555554443
No 62
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=96.87 E-value=0.00022 Score=78.09 Aligned_cols=172 Identities=22% Similarity=0.169 Sum_probs=98.1
Q ss_pred cccccCCCCCc-chHHHHHhcCCCCCcEEEccCCCCCCCCCCCCCCCCCCcEEEeeCCC-CCccchhhHhhhhhhhhhhh
Q 002315 65 AYVSDLGDHRA-LEQLRRILKLLTSLKVVSALPPPARDPTPLSLLPFCRLKVLELRGCD-LSTSAAKGLLELRHTLEKII 142 (937)
Q Consensus 65 l~vLdLs~n~~-le~Lp~~L~~L~~Lk~LdLs~N~Is~~iP~sLs~L~~L~~LdLS~N~-Ls~~lp~~L~~L~~Ll~LlL 142 (937)
+..+||+.... ...+...++.+.+|+.|.|.++.+.+.+...+.+-.+|+.|||+.+. ++. .++.-+ +
T Consensus 187 lq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~---n~~~ll-------~ 256 (419)
T KOG2120|consen 187 LQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTE---NALQLL-------L 256 (419)
T ss_pred hHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccch---hHHHHH-------H
Confidence 34566665443 34566677888888888888888887777778888888888888764 322 111110 0
Q ss_pred ccCCCcccchhcccchhcccCCCCCCCccEEEccCCcCc--cchhhcCC-CCCCcEEECCCCC----CCCCc-CcCCCCC
Q 002315 143 CHNSTNALRHVFASRIVEIKDSPQWNRLSFVSCSCNRLV--IMDESLQL-LPAVETLDLSRNK----FAKVD-NLRKCVN 214 (937)
Q Consensus 143 ~~N~L~~L~~l~~~~i~~l~~l~~l~~L~~L~Ls~N~Ls--~LP~sL~~-L~~L~~LdLs~N~----L~~l~-~L~~L~~ 214 (937)
..++.|..|+|+.+.+. .+...+.. -++|+.|+|++.. ...+. -..++++
T Consensus 257 ----------------------~scs~L~~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~ 314 (419)
T KOG2120|consen 257 ----------------------SSCSRLDELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPN 314 (419)
T ss_pred ----------------------HhhhhHhhcCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCc
Confidence 13445666666666544 11111111 2356666666542 11122 1345677
Q ss_pred CCEEECCCCC-CCC-cccccccccccceecccCcccccc---ccCCCCCCCCEEEccCC
Q 002315 215 LKHLDLGFNN-LRS-IAAFSEVSCHIVKLVLRNNALTTL---RGIENLKSLEGLDISYN 268 (937)
Q Consensus 215 L~~LdLS~N~-Lt~-L~~l~~~l~sL~~L~Ls~N~Lt~L---p~L~~L~sL~~LdLS~N 268 (937)
|.+|||++|. |+. ....+..++.|++|.|+.|-.-.. -.+...|+|.+|++.+.
T Consensus 315 l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSlsRCY~i~p~~~~~l~s~psl~yLdv~g~ 373 (419)
T KOG2120|consen 315 LVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLSRCYDIIPETLLELNSKPSLVYLDVFGC 373 (419)
T ss_pred eeeeccccccccCchHHHHHHhcchheeeehhhhcCCChHHeeeeccCcceEEEEeccc
Confidence 7777777763 332 122333456777777777743221 25677788888887664
No 63
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.76 E-value=0.00063 Score=73.48 Aligned_cols=62 Identities=27% Similarity=0.318 Sum_probs=31.0
Q ss_pred CCCCccEEEccCC--cCc-cchhhcCCCCCCcEEECCCCCCCCCc---CcCCCCCCCEEECCCCCCCC
Q 002315 166 QWNRLSFVSCSCN--RLV-IMDESLQLLPAVETLDLSRNKFAKVD---NLRKCVNLKHLDLGFNNLRS 227 (937)
Q Consensus 166 ~l~~L~~L~Ls~N--~Ls-~LP~sL~~L~~L~~LdLs~N~L~~l~---~L~~L~~L~~LdLS~N~Lt~ 227 (937)
.+++|+.|.++.| ++. .++.....+|+|++|+++.|+|..+. .+..+.+|..|++.+|..+.
T Consensus 63 ~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~~Ldl~n~~~~~ 130 (260)
T KOG2739|consen 63 KLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENLKSLDLFNCSVTN 130 (260)
T ss_pred CcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcchhhhhcccCCccc
Confidence 4455666666666 333 33333334456666666666555432 33444455555555554443
No 64
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.65 E-value=0.00018 Score=78.12 Aligned_cols=101 Identities=28% Similarity=0.321 Sum_probs=52.6
Q ss_pred CCccEEEccCCcCccchhhcCCCCCCcEEECCCCCCCCCcCcCCCCCCCEEECCCCCCCCcccccccccccceecccCcc
Q 002315 168 NRLSFVSCSCNRLVIMDESLQLLPAVETLDLSRNKFAKVDNLRKCVNLKHLDLGFNNLRSIAAFSEVSCHIVKLVLRNNA 247 (937)
Q Consensus 168 ~~L~~L~Ls~N~Ls~LP~sL~~L~~L~~LdLs~N~L~~l~~L~~L~~L~~LdLS~N~Lt~L~~l~~~l~sL~~L~Ls~N~ 247 (937)
.+.+.|++.++.|..| .....|+.|+.|.|+-|.|+.+..|..+++|+.|.|..|.|..+..+
T Consensus 19 ~~vkKLNcwg~~L~DI-sic~kMp~lEVLsLSvNkIssL~pl~rCtrLkElYLRkN~I~sldEL---------------- 81 (388)
T KOG2123|consen 19 ENVKKLNCWGCGLDDI-SICEKMPLLEVLSLSVNKISSLAPLQRCTRLKELYLRKNCIESLDEL---------------- 81 (388)
T ss_pred HHhhhhcccCCCccHH-HHHHhcccceeEEeeccccccchhHHHHHHHHHHHHHhcccccHHHH----------------
Confidence 3455666666666655 33445566666666666665555555555555555555555444332
Q ss_pred ccccccCCCCCCCCEEEccCCCCCCCch----hhhhcCCCCCCEEE
Q 002315 248 LTTLRGIENLKSLEGLDISYNIISTFSE----LEFLASLPYLLNLW 289 (937)
Q Consensus 248 Lt~Lp~L~~L~sL~~LdLS~N~Ls~l~~----l~~L~~L~sL~~L~ 289 (937)
..+.++|+|+.|+|..|.-.+-.. ...+..||+|+.|+
T Consensus 82 ----~YLknlpsLr~LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 82 ----EYLKNLPSLRTLWLDENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred ----HHHhcCchhhhHhhccCCcccccchhHHHHHHHHcccchhcc
Confidence 134555556666665554332111 12344556666554
No 65
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=95.45 E-value=0.043 Score=52.27 Aligned_cols=113 Identities=15% Similarity=0.299 Sum_probs=45.7
Q ss_pred CCCCccEEEccCCcCccchh-hcCCCCCCcEEECCCCCCCCCc--CcCCCCCCCEEECCCCCCCCcccc-ccccccccee
Q 002315 166 QWNRLSFVSCSCNRLVIMDE-SLQLLPAVETLDLSRNKFAKVD--NLRKCVNLKHLDLGFNNLRSIAAF-SEVSCHIVKL 241 (937)
Q Consensus 166 ~l~~L~~L~Ls~N~Ls~LP~-sL~~L~~L~~LdLs~N~L~~l~--~L~~L~~L~~LdLS~N~Lt~L~~l-~~~l~sL~~L 241 (937)
.+++|+.+.+.. .+..|+. .|..+++|+.+.+..+ +..++ .|..+++|+.+.+.. .+..++.. +..++.|+.+
T Consensus 10 ~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l~~i 86 (129)
T PF13306_consen 10 NCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNLKNI 86 (129)
T ss_dssp T-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTECEE
T ss_pred CCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-ccccccccccccccccccc
Confidence 344666666653 4555544 4666666777777664 55543 466666677777654 44444432 2234566666
Q ss_pred cccCccccccc--cCCCCCCCCEEEccCCCCCCCchhhhhcCCCCC
Q 002315 242 VLRNNALTTLR--GIENLKSLEGLDISYNIISTFSELEFLASLPYL 285 (937)
Q Consensus 242 ~Ls~N~Lt~Lp--~L~~L~sL~~LdLS~N~Ls~l~~l~~L~~L~sL 285 (937)
.+..+ +..++ .+..+ .|+.+.+.. .+..++. ..+..+++|
T Consensus 87 ~~~~~-~~~i~~~~f~~~-~l~~i~~~~-~~~~i~~-~~F~~~~~l 128 (129)
T PF13306_consen 87 DIPSN-ITEIGSSSFSNC-NLKEINIPS-NITKIEE-NAFKNCTKL 128 (129)
T ss_dssp EETTT--BEEHTTTTTT--T--EEE-TT-B-SS-----GGG-----
T ss_pred ccCcc-ccEEchhhhcCC-CceEEEECC-CccEECC-ccccccccC
Confidence 66554 44442 45554 666666554 3333332 334444444
No 66
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=94.52 E-value=0.013 Score=69.18 Aligned_cols=90 Identities=40% Similarity=0.510 Sum_probs=62.2
Q ss_pred ccccccceecccCccccccccC----CCCCCCCEEEccCC--CCCCCchhhhhcCCCCCCEEEecCCCCCCCcchhhhHh
Q 002315 233 EVSCHIVKLVLRNNALTTLRGI----ENLKSLEGLDISYN--IISTFSELEFLASLPYLLNLWLEGNPLCCSRWYRAQVF 306 (937)
Q Consensus 233 ~~l~sL~~L~Ls~N~Lt~Lp~L----~~L~sL~~LdLS~N--~Ls~l~~l~~L~~L~sL~~L~Ls~NpLt~~~~~r~~~~ 306 (937)
...+.+..|+|++|+|..+..+ ...|+|..|+|++| .+.....+..++.+ .|++|.|.|||++..-.++...+
T Consensus 215 ~n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~~~el~K~k~l-~Leel~l~GNPlc~tf~~~s~yv 293 (585)
T KOG3763|consen 215 ENFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISSESELDKLKGL-PLEELVLEGNPLCTTFSDRSEYV 293 (585)
T ss_pred cCCcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcchhhhhhhcCC-CHHHeeecCCccccchhhhHHHH
Confidence 3457788888888888877543 34588999999999 66655444444444 58999999999987633333322
Q ss_pred ----hhcCCCceeccCCccCChh
Q 002315 307 ----SYFAHPAKLKVDGKEISTR 325 (937)
Q Consensus 307 ----~~l~~L~~L~LdgN~Is~~ 325 (937)
..| ++.+.|||..+...
T Consensus 294 ~~i~~~F--PKL~~LDG~ev~~~ 314 (585)
T KOG3763|consen 294 SAIRELF--PKLLRLDGVEVQPE 314 (585)
T ss_pred HHHHHhc--chheeecCcccCcc
Confidence 345 56678899988753
No 67
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=94.36 E-value=0.083 Score=50.27 Aligned_cols=103 Identities=12% Similarity=0.236 Sum_probs=46.1
Q ss_pred HhcCCCCCcEEEccCCCCCCCCCCCCCCCCCCcEEEeeCCCCCccchhhHhhhhhhhhhhhccCCCcccchhcccchhcc
Q 002315 82 ILKLLTSLKVVSALPPPARDPTPLSLLPFCRLKVLELRGCDLSTSAAKGLLELRHTLEKIICHNSTNALRHVFASRIVEI 161 (937)
Q Consensus 82 ~L~~L~~Lk~LdLs~N~Is~~iP~sLs~L~~L~~LdLS~N~Ls~~lp~~L~~L~~Ll~LlL~~N~L~~L~~l~~~~i~~l 161 (937)
.|..+++|+.+.+. +.+..+....|..+++|+.+.+..+ +.......|..+
T Consensus 7 ~F~~~~~l~~i~~~-~~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~--------------------------- 57 (129)
T PF13306_consen 7 AFYNCSNLESITFP-NTIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNC--------------------------- 57 (129)
T ss_dssp TTTT-TT--EEEET-ST--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT----------------------------
T ss_pred HHhCCCCCCEEEEC-CCeeEeChhhccccccccccccccc-ccccceeeeecc---------------------------
Confidence 45667778888875 3565555667777778888887764 544333333333
Q ss_pred cCCCCCCCccEEEccCCcCccchh-hcCCCCCCcEEECCCCCCCCCc--CcCCCCCCCEEECCC
Q 002315 162 KDSPQWNRLSFVSCSCNRLVIMDE-SLQLLPAVETLDLSRNKFAKVD--NLRKCVNLKHLDLGF 222 (937)
Q Consensus 162 ~~l~~l~~L~~L~Ls~N~Ls~LP~-sL~~L~~L~~LdLs~N~L~~l~--~L~~L~~L~~LdLS~ 222 (937)
+.|+.+.+.. .+..++. .|..+++|+.+.+..+ +..++ .|... .|+.+.+..
T Consensus 58 ------~~l~~i~~~~-~~~~i~~~~F~~~~~l~~i~~~~~-~~~i~~~~f~~~-~l~~i~~~~ 112 (129)
T PF13306_consen 58 ------KSLESITFPN-NLKSIGDNAFSNCTNLKNIDIPSN-ITEIGSSSFSNC-NLKEINIPS 112 (129)
T ss_dssp ------TT-EEEEETS-TT-EE-TTTTTT-TTECEEEETTT--BEEHTTTTTT--T--EEE-TT
T ss_pred ------cccccccccc-cccccccccccccccccccccCcc-ccEEchhhhcCC-CceEEEECC
Confidence 2445555543 3333333 3444666666666544 43332 45554 566666554
No 68
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=94.13 E-value=0.0014 Score=77.69 Aligned_cols=181 Identities=25% Similarity=0.188 Sum_probs=104.5
Q ss_pred CcEEEccCCCCCCCC----CCCCCCCCCCcEEEeeCCCCCccchhhHhhhhhhhhhhhccCCCcccchhcccchhcccCC
Q 002315 89 LKVVSALPPPARDPT----PLSLLPFCRLKVLELRGCDLSTSAAKGLLELRHTLEKIICHNSTNALRHVFASRIVEIKDS 164 (937)
Q Consensus 89 Lk~LdLs~N~Is~~i----P~sLs~L~~L~~LdLS~N~Ls~~lp~~L~~L~~Ll~LlL~~N~L~~L~~l~~~~i~~l~~l 164 (937)
+..|.|.+|.+.... ...+..++.|+.|+|++|.+.......+..--
T Consensus 89 l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l----------------------------- 139 (478)
T KOG4308|consen 89 LLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGL----------------------------- 139 (478)
T ss_pred HHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhc-----------------------------
Confidence 666777777765432 23455567777777777777632222221110
Q ss_pred CCC-CCccEEEccCCcCc-----cchhhcCCCCCCcEEECCCCCCCCC------cCc----CCCCCCCEEECCCCCCCCc
Q 002315 165 PQW-NRLSFVSCSCNRLV-----IMDESLQLLPAVETLDLSRNKFAKV------DNL----RKCVNLKHLDLGFNNLRSI 228 (937)
Q Consensus 165 ~~l-~~L~~L~Ls~N~Ls-----~LP~sL~~L~~L~~LdLs~N~L~~l------~~L----~~L~~L~~LdLS~N~Lt~L 228 (937)
... ..|++|.+..|.++ .+...+.....|+.|+++.|.+... ..+ ....++++|.|++|.++..
T Consensus 140 ~~~~~~l~~L~l~~c~l~~~g~~~l~~~L~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~ 219 (478)
T KOG4308|consen 140 RLPQCLLQTLELVSCSLTSEGAAPLAAVLEKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSS 219 (478)
T ss_pred ccchHHHHHHHhhcccccccchHHHHHHHhcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChH
Confidence 000 23445555555554 3445566677777777777776431 122 3456778888888877632
Q ss_pred c-----cccccccc-cceecccCcccccc------ccCCCC-CCCCEEEccCCCCCCCchh---hhhcCCCCCCEEEecC
Q 002315 229 A-----AFSEVSCH-IVKLVLRNNALTTL------RGIENL-KSLEGLDISYNIISTFSEL---EFLASLPYLLNLWLEG 292 (937)
Q Consensus 229 ~-----~l~~~l~s-L~~L~Ls~N~Lt~L------p~L~~L-~sL~~LdLS~N~Ls~l~~l---~~L~~L~sL~~L~Ls~ 292 (937)
. ......+. +..|++..|.+.+. +.+..+ ..+++++++.|.|...... ..+..++.++.|.+..
T Consensus 220 ~c~~l~~~l~~~~~~~~el~l~~n~l~d~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~ 299 (478)
T KOG4308|consen 220 SCALLDEVLASGESLLRELDLASNKLGDVGVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSN 299 (478)
T ss_pred HHHHHHHHHhccchhhHHHHHHhcCcchHHHHHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhccc
Confidence 1 11112233 56688888877652 345555 6778888888887764321 2345566777888888
Q ss_pred CCCCCC
Q 002315 293 NPLCCS 298 (937)
Q Consensus 293 NpLt~~ 298 (937)
|++...
T Consensus 300 n~l~~~ 305 (478)
T KOG4308|consen 300 NPLTDY 305 (478)
T ss_pred CccccH
Confidence 887643
No 69
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=91.65 E-value=0.17 Score=58.69 Aligned_cols=39 Identities=26% Similarity=0.188 Sum_probs=22.8
Q ss_pred hcCCCCCcEEEccCCCCCCC--CCCCCCCCCCCcEEEeeCC
Q 002315 83 LKLLTSLKVVSALPPPARDP--TPLSLLPFCRLKVLELRGC 121 (937)
Q Consensus 83 L~~L~~Lk~LdLs~N~Is~~--iP~sLs~L~~L~~LdLS~N 121 (937)
...++.|+.|.+....-... +-......+.|+.|+++++
T Consensus 184 ~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 224 (482)
T KOG1947|consen 184 LSSCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGC 224 (482)
T ss_pred HhhCchhhHhhhcccccCChhhHHHHHhhCchhheecccCc
Confidence 34467777777765532221 1233456678888888763
No 70
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=90.75 E-value=0.017 Score=68.72 Aligned_cols=170 Identities=26% Similarity=0.297 Sum_probs=96.1
Q ss_pred chHHHHHhcCCCCCcEEEccCCCCCCCCC----CCCCCC-CCCcEEEeeCCCCCccch----hhHhhhhhhhhhhhccCC
Q 002315 76 LEQLRRILKLLTSLKVVSALPPPARDPTP----LSLLPF-CRLKVLELRGCDLSTSAA----KGLLELRHTLEKIICHNS 146 (937)
Q Consensus 76 le~Lp~~L~~L~~Lk~LdLs~N~Is~~iP----~sLs~L-~~L~~LdLS~N~Ls~~lp----~~L~~L~~Ll~LlL~~N~ 146 (937)
.+.+...+..++.|..|+|++|.+.+... ..+... ..|++|++..|.++.... ..+.....+..+.+..|.
T Consensus 104 ~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L~~~~~l~~l~l~~n~ 183 (478)
T KOG4308|consen 104 AEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVLEKNEHLTELDLSLNG 183 (478)
T ss_pred HHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHHhcccchhHHHHHhcc
Confidence 45667788899999999999999975322 223333 677888898888886333 333333333344444443
Q ss_pred CcccchhcccchhcccCCCCCCCccEEEccCCcCccchhh----cCCCCCCcEEECCCCCCCCCc------CcCCCCC-C
Q 002315 147 TNALRHVFASRIVEIKDSPQWNRLSFVSCSCNRLVIMDES----LQLLPAVETLDLSRNKFAKVD------NLRKCVN-L 215 (937)
Q Consensus 147 L~~L~~l~~~~i~~l~~l~~l~~L~~L~Ls~N~Ls~LP~s----L~~L~~L~~LdLs~N~L~~l~------~L~~L~~-L 215 (937)
+...... .++.. +....++++|.++++.++... .+...+. +
T Consensus 184 l~~~g~~----------------------------~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~ 235 (478)
T KOG4308|consen 184 LIELGLL----------------------------VLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLL 235 (478)
T ss_pred cchhhhH----------------------------HHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhh
Confidence 2211100 11122 223556666666666665421 3444444 5
Q ss_pred CEEECCCCCCCCc-----ccccccc-cccceecccCcccccc------ccCCCCCCCCEEEccCCCCCCC
Q 002315 216 KHLDLGFNNLRSI-----AAFSEVS-CHIVKLVLRNNALTTL------RGIENLKSLEGLDISYNIISTF 273 (937)
Q Consensus 216 ~~LdLS~N~Lt~L-----~~l~~~l-~sL~~L~Ls~N~Lt~L------p~L~~L~sL~~LdLS~N~Ls~l 273 (937)
..|++..|.+... .+....+ +.++.|+++.|.|+.- ..+..++.++.|.+++|.+...
T Consensus 236 ~el~l~~n~l~d~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~~~ 305 (478)
T KOG4308|consen 236 RELDLASNKLGDVGVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLTDY 305 (478)
T ss_pred HHHHHHhcCcchHHHHHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCccccH
Confidence 5567777766532 1111222 4567777777777662 2455666777777777777653
No 71
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=88.35 E-value=0.27 Score=33.42 Aligned_cols=21 Identities=24% Similarity=0.324 Sum_probs=16.5
Q ss_pred CccEEEccCCcCccchhhcCC
Q 002315 169 RLSFVSCSCNRLVIMDESLQL 189 (937)
Q Consensus 169 ~L~~L~Ls~N~Ls~LP~sL~~ 189 (937)
+|++|+|++|+|+.+|..|++
T Consensus 1 ~L~~Ldls~n~l~~ip~~~~~ 21 (22)
T PF00560_consen 1 NLEYLDLSGNNLTSIPSSFSN 21 (22)
T ss_dssp TESEEEETSSEESEEGTTTTT
T ss_pred CccEEECCCCcCEeCChhhcC
Confidence 478888888888888877654
No 72
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=88.17 E-value=0.024 Score=60.79 Aligned_cols=87 Identities=15% Similarity=0.076 Sum_probs=66.2
Q ss_pred CcCCCCCCCEEECCCCCCCCcccccccccccceecccCccccccc-cCCCCCCCCEEEccCCCCCCCchhhhhcCCCCCC
Q 002315 208 NLRKCVNLKHLDLGFNNLRSIAAFSEVSCHIVKLVLRNNALTTLR-GIENLKSLEGLDISYNIISTFSELEFLASLPYLL 286 (937)
Q Consensus 208 ~L~~L~~L~~LdLS~N~Lt~L~~l~~~l~sL~~L~Ls~N~Lt~Lp-~L~~L~sL~~LdLS~N~Ls~l~~l~~L~~L~sL~ 286 (937)
.+......+.||++.|++-.+...+..+..|..|+++.|.|..+| .+..+..+..+++..|..+..| ..+..+|.++
T Consensus 37 ei~~~kr~tvld~~s~r~vn~~~n~s~~t~~~rl~~sknq~~~~~~d~~q~~e~~~~~~~~n~~~~~p--~s~~k~~~~k 114 (326)
T KOG0473|consen 37 EIASFKRVTVLDLSSNRLVNLGKNFSILTRLVRLDLSKNQIKFLPKDAKQQRETVNAASHKNNHSQQP--KSQKKEPHPK 114 (326)
T ss_pred hhhccceeeeehhhhhHHHhhccchHHHHHHHHHhccHhhHhhChhhHHHHHHHHHHHhhccchhhCC--ccccccCCcc
Confidence 455566777788888877766655556677888888888888776 6777777888888888888876 5677888888
Q ss_pred EEEecCCCCC
Q 002315 287 NLWLEGNPLC 296 (937)
Q Consensus 287 ~L~Ls~NpLt 296 (937)
++++.+|++.
T Consensus 115 ~~e~k~~~~~ 124 (326)
T KOG0473|consen 115 KNEQKKTEFF 124 (326)
T ss_pred hhhhccCcch
Confidence 8888888874
No 73
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=87.33 E-value=0.24 Score=57.20 Aligned_cols=229 Identities=17% Similarity=0.082 Sum_probs=113.1
Q ss_pred HhcCCCCCcEEEccCCC-CCCCCCC-CCCCCCCCcEEEeeCCCC-Cccch-hhHhhhhhhhhhhhccCCCcccchhcccc
Q 002315 82 ILKLLTSLKVVSALPPP-ARDPTPL-SLLPFCRLKVLELRGCDL-STSAA-KGLLELRHTLEKIICHNSTNALRHVFASR 157 (937)
Q Consensus 82 ~L~~L~~Lk~LdLs~N~-Is~~iP~-sLs~L~~L~~LdLS~N~L-s~~lp-~~L~~L~~Ll~LlL~~N~L~~L~~l~~~~ 157 (937)
.-..+++|++|+|..+. |+...-. -...+++|++|+++.|.- ++... .-+.+...+..+.+.+..-..+..+.
T Consensus 185 la~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~--- 261 (483)
T KOG4341|consen 185 LARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKLKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEALL--- 261 (483)
T ss_pred HHHhcchhhhhhhcccchhHHHHHHHHHHhhhhHHHhhhccCchhhcCcchHHhccchhhhhhhhcccccccHHHHH---
Confidence 33557888888886633 3332222 123568888998888743 32111 11122222222222221000010000
Q ss_pred hhcccCCCCCCCccEEEccCC-cCccch--hhcCCCCCCcEEECCCC-CCCCC--cC-cCCCCCCCEEECCCCC-CCC--
Q 002315 158 IVEIKDSPQWNRLSFVSCSCN-RLVIMD--ESLQLLPAVETLDLSRN-KFAKV--DN-LRKCVNLKHLDLGFNN-LRS-- 227 (937)
Q Consensus 158 i~~l~~l~~l~~L~~L~Ls~N-~Ls~LP--~sL~~L~~L~~LdLs~N-~L~~l--~~-L~~L~~L~~LdLS~N~-Lt~-- 227 (937)
.+. ..+..+..+++..+ .++... ..-..+..|+.|+.++. .++.. .. ..+.++|+.|-|+.++ ++.
T Consensus 262 --~~~--~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ 337 (483)
T KOG4341|consen 262 --KAA--AYCLEILKLNLQHCNQLTDEDLWLIACGCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRG 337 (483)
T ss_pred --HHh--ccChHhhccchhhhccccchHHHHHhhhhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhh
Confidence 000 12223444444333 344221 12234566777777654 33332 12 2345778888887774 332
Q ss_pred cccccccccccceecccCccccc---c-ccCCCCCCCCEEEccCCCCCCCchhhhh----cCCCCCCEEEecCCCCCCCc
Q 002315 228 IAAFSEVSCHIVKLVLRNNALTT---L-RGIENLKSLEGLDISYNIISTFSELEFL----ASLPYLLNLWLEGNPLCCSR 299 (937)
Q Consensus 228 L~~l~~~l~sL~~L~Ls~N~Lt~---L-p~L~~L~sL~~LdLS~N~Ls~l~~l~~L----~~L~sL~~L~Ls~NpLt~~~ 299 (937)
+..+...++.|+.|++..+.... + ..-.+++.|+.|.|+++.+..-..+..+ ..+..|..|-|++.|.....
T Consensus 338 ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~ 417 (483)
T KOG4341|consen 338 FTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDA 417 (483)
T ss_pred hhhhhcCChhhhhhcccccceehhhhHhhhccCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHH
Confidence 23344456778888887775433 2 2234667788888887654332211112 34567788888888876443
Q ss_pred chhhhHhhhcCCCceeccCC
Q 002315 300 WYRAQVFSYFAHPAKLKVDG 319 (937)
Q Consensus 300 ~~r~~~~~~l~~L~~L~Ldg 319 (937)
....+...++|+.+.|-+
T Consensus 418 --~Le~l~~c~~Leri~l~~ 435 (483)
T KOG4341|consen 418 --TLEHLSICRNLERIELID 435 (483)
T ss_pred --HHHHHhhCcccceeeeec
Confidence 224455666677655433
No 74
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=85.58 E-value=0.31 Score=33.12 Aligned_cols=20 Identities=30% Similarity=0.493 Sum_probs=12.1
Q ss_pred CCcEEEeeCCCCCccchhhHh
Q 002315 112 RLKVLELRGCDLSTSAAKGLL 132 (937)
Q Consensus 112 ~L~~LdLS~N~Ls~~lp~~L~ 132 (937)
+|++|||++|+|+ .+|..|.
T Consensus 1 ~L~~Ldls~n~l~-~ip~~~~ 20 (22)
T PF00560_consen 1 NLEYLDLSGNNLT-SIPSSFS 20 (22)
T ss_dssp TESEEEETSSEES-EEGTTTT
T ss_pred CccEEECCCCcCE-eCChhhc
Confidence 4667777777776 3554443
No 75
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=79.68 E-value=0.088 Score=56.57 Aligned_cols=86 Identities=16% Similarity=0.154 Sum_probs=58.8
Q ss_pred hcCCCCCCcEEECCCCCCCCCc-CcCCCCCCCEEECCCCCCCCcccccccccccceecccCccccccc-cCCCCCCCCEE
Q 002315 186 SLQLLPAVETLDLSRNKFAKVD-NLRKCVNLKHLDLGFNNLRSIAAFSEVSCHIVKLVLRNNALTTLR-GIENLKSLEGL 263 (937)
Q Consensus 186 sL~~L~~L~~LdLs~N~L~~l~-~L~~L~~L~~LdLS~N~Lt~L~~l~~~l~sL~~L~Ls~N~Lt~Lp-~L~~L~sL~~L 263 (937)
.+......+.||++.|++..+. .|..++.|..|+++.|.+..+|........+..+++..|.++..| .+..++.++++
T Consensus 37 ei~~~kr~tvld~~s~r~vn~~~n~s~~t~~~rl~~sknq~~~~~~d~~q~~e~~~~~~~~n~~~~~p~s~~k~~~~k~~ 116 (326)
T KOG0473|consen 37 EIASFKRVTVLDLSSNRLVNLGKNFSILTRLVRLDLSKNQIKFLPKDAKQQRETVNAASHKNNHSQQPKSQKKEPHPKKN 116 (326)
T ss_pred hhhccceeeeehhhhhHHHhhccchHHHHHHHHHhccHhhHhhChhhHHHHHHHHHHHhhccchhhCCccccccCCcchh
Confidence 3445556667777777666553 566666777777777777777665555566777777777777776 67777788877
Q ss_pred EccCCCCC
Q 002315 264 DISYNIIS 271 (937)
Q Consensus 264 dLS~N~Ls 271 (937)
++-.|.+.
T Consensus 117 e~k~~~~~ 124 (326)
T KOG0473|consen 117 EQKKTEFF 124 (326)
T ss_pred hhccCcch
Confidence 77777643
No 76
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=78.33 E-value=0.94 Score=52.52 Aligned_cols=107 Identities=22% Similarity=0.231 Sum_probs=59.9
Q ss_pred CCCCcEEECCCC-CCCC--C-cCcCCCCCCCEEECCCC--CCCCcc----cccccccccceecccCcc-cccc--ccCC-
Q 002315 190 LPAVETLDLSRN-KFAK--V-DNLRKCVNLKHLDLGFN--NLRSIA----AFSEVSCHIVKLVLRNNA-LTTL--RGIE- 255 (937)
Q Consensus 190 L~~L~~LdLs~N-~L~~--l-~~L~~L~~L~~LdLS~N--~Lt~L~----~l~~~l~sL~~L~Ls~N~-Lt~L--p~L~- 255 (937)
++.|+.|.+... .+.. + +....++.|+.|+++++ .+...+ .....+++|+.|+++.+. ++.. ..+.
T Consensus 187 ~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~ 266 (482)
T KOG1947|consen 187 CPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALAS 266 (482)
T ss_pred CchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHHh
Confidence 566666666654 3332 2 23445567777777652 111111 123344677777777776 5543 2222
Q ss_pred CCCCCCEEEccCCC-CCCCchhhhhcCCCCCCEEEecCCCCC
Q 002315 256 NLKSLEGLDISYNI-ISTFSELEFLASLPYLLNLWLEGNPLC 296 (937)
Q Consensus 256 ~L~sL~~LdLS~N~-Ls~l~~l~~L~~L~sL~~L~Ls~NpLt 296 (937)
.+++|+.|.+.++. +++..-......++.|+.|+|+++...
T Consensus 267 ~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~ 308 (482)
T KOG1947|consen 267 RCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGL 308 (482)
T ss_pred hCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccc
Confidence 26778887766665 555433333456777888888876654
No 77
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=78.14 E-value=1.3 Score=28.37 Aligned_cols=14 Identities=36% Similarity=0.565 Sum_probs=4.9
Q ss_pred CCCEEEccCCCCCC
Q 002315 259 SLEGLDISYNIIST 272 (937)
Q Consensus 259 sL~~LdLS~N~Ls~ 272 (937)
+|+.|+|++|+|+.
T Consensus 2 ~L~~L~l~~n~L~~ 15 (17)
T PF13504_consen 2 NLRTLDLSNNRLTS 15 (17)
T ss_dssp T-SEEEETSS--SS
T ss_pred ccCEEECCCCCCCC
Confidence 34444444444443
No 78
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=77.21 E-value=1.5 Score=28.12 Aligned_cols=12 Identities=50% Similarity=0.675 Sum_probs=3.6
Q ss_pred CCEEECCCCCCC
Q 002315 215 LKHLDLGFNNLR 226 (937)
Q Consensus 215 L~~LdLS~N~Lt 226 (937)
|+.|+|++|+|+
T Consensus 3 L~~L~l~~n~L~ 14 (17)
T PF13504_consen 3 LRTLDLSNNRLT 14 (17)
T ss_dssp -SEEEETSS--S
T ss_pred cCEEECCCCCCC
Confidence 334444444333
No 79
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=74.80 E-value=2.2 Score=51.08 Aligned_cols=76 Identities=20% Similarity=0.172 Sum_probs=54.6
Q ss_pred CCCCCCCEEEccCCCCCCCchhhhh-cCCCCCCEEEecCC--CCCCCcchhhhHhhhcCCCceeccCCccCChhhHHHHH
Q 002315 255 ENLKSLEGLDISYNIISTFSELEFL-ASLPYLLNLWLEGN--PLCCSRWYRAQVFSYFAHPAKLKVDGKEISTRELWERQ 331 (937)
Q Consensus 255 ~~L~sL~~LdLS~N~Ls~l~~l~~L-~~L~sL~~L~Ls~N--pLt~~~~~r~~~~~~l~~L~~L~LdgN~Is~~e~~~~~ 331 (937)
.+.+.+..++|++|+|..+..+..+ ...|+|+.|+|++| .+....++ .-+ ....|+.|.|+||||...-...++
T Consensus 215 ~n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~~~el--~K~-k~l~Leel~l~GNPlc~tf~~~s~ 291 (585)
T KOG3763|consen 215 ENFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISSESEL--DKL-KGLPLEELVLEGNPLCTTFSDRSE 291 (585)
T ss_pred cCCcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcchhhh--hhh-cCCCHHHeeecCCccccchhhhHH
Confidence 4567888999999999988776555 35689999999999 44433322 122 344588999999999876555554
Q ss_pred HH
Q 002315 332 LI 333 (937)
Q Consensus 332 ~l 333 (937)
.+
T Consensus 292 yv 293 (585)
T KOG3763|consen 292 YV 293 (585)
T ss_pred HH
Confidence 44
No 80
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=74.42 E-value=0.5 Score=54.66 Aligned_cols=118 Identities=19% Similarity=0.083 Sum_probs=74.5
Q ss_pred CCCCCCEEECCCCC-CCC--cccccccccccceecccCcc-cccc--c-cCCCCCCCCEEEccCCCCCCCchhhh-hcCC
Q 002315 211 KCVNLKHLDLGFNN-LRS--IAAFSEVSCHIVKLVLRNNA-LTTL--R-GIENLKSLEGLDISYNIISTFSELEF-LASL 282 (937)
Q Consensus 211 ~L~~L~~LdLS~N~-Lt~--L~~l~~~l~sL~~L~Ls~N~-Lt~L--p-~L~~L~sL~~LdLS~N~Ls~l~~l~~-L~~L 282 (937)
.+..|+.|..+++. ++. +..+....++|+.|-|+.++ ++.. . --.+++.|+.|++..........+.. -.++
T Consensus 292 ~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C 371 (483)
T KOG4341|consen 292 GCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNC 371 (483)
T ss_pred hhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCC
Confidence 45678888887763 332 22344556789999998884 4443 2 22467788889888776543222222 2467
Q ss_pred CCCCEEEecCCCCCCCcchhhhH--hhhcCCCceeccCCccCChhhHH
Q 002315 283 PYLLNLWLEGNPLCCSRWYRAQV--FSYFAHPAKLKVDGKEISTRELW 328 (937)
Q Consensus 283 ~sL~~L~Ls~NpLt~~~~~r~~~--~~~l~~L~~L~LdgN~Is~~e~~ 328 (937)
+.|+.|.|+++....+...+... -..+..+..+.|++.|...+...
T Consensus 372 ~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~L 419 (483)
T KOG4341|consen 372 PRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATL 419 (483)
T ss_pred chhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHH
Confidence 89999999988654443222111 13456788999999998876533
No 81
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=69.96 E-value=3.9 Score=57.14 Aligned_cols=38 Identities=42% Similarity=0.466 Sum_probs=33.6
Q ss_pred EccCCCCCCCchhhhhcCCCCCCEEEecCCCCCCCcchh
Q 002315 264 DISYNIISTFSELEFLASLPYLLNLWLEGNPLCCSRWYR 302 (937)
Q Consensus 264 dLS~N~Ls~l~~l~~L~~L~sL~~L~Ls~NpLt~~~~~r 302 (937)
||++|+|+.++. ..|..+++|+.|+|++|||.|+|.+.
T Consensus 1 DLSnN~LstLp~-g~F~~L~sL~~LdLsgNPw~CDC~L~ 38 (2740)
T TIGR00864 1 DISNNKISTIEE-GICANLCNLSEIDLSGNPFECDCGLA 38 (2740)
T ss_pred CCCCCcCCccCh-HHhccCCCceEEEeeCCccccccccH
Confidence 688999999986 77889999999999999999998653
No 82
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=68.12 E-value=0.76 Score=48.69 Aligned_cols=74 Identities=22% Similarity=0.329 Sum_probs=36.2
Q ss_pred CCcEEECCCCCCCC--CcCcCCCCCCCEEECCCCC-CCC--cccccccccccceecccCc-cccc--cccCCCCCCCCEE
Q 002315 192 AVETLDLSRNKFAK--VDNLRKCVNLKHLDLGFNN-LRS--IAAFSEVSCHIVKLVLRNN-ALTT--LRGIENLKSLEGL 263 (937)
Q Consensus 192 ~L~~LdLs~N~L~~--l~~L~~L~~L~~LdLS~N~-Lt~--L~~l~~~l~sL~~L~Ls~N-~Lt~--Lp~L~~L~sL~~L 263 (937)
.++.++.++..|.. ++.+..++.|+.|.+.++. +.. +..+....++|+.|+|++| +|+. +..+..+++|+.|
T Consensus 102 ~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L 181 (221)
T KOG3864|consen 102 KIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRL 181 (221)
T ss_pred eEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHH
Confidence 35666666666553 3456666666666666553 111 1112223355555555554 4444 2344444444444
Q ss_pred Ec
Q 002315 264 DI 265 (937)
Q Consensus 264 dL 265 (937)
.|
T Consensus 182 ~l 183 (221)
T KOG3864|consen 182 HL 183 (221)
T ss_pred Hh
Confidence 44
No 83
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=67.68 E-value=2.2 Score=29.33 Aligned_cols=22 Identities=23% Similarity=0.324 Sum_probs=14.1
Q ss_pred CCCCcEEEeeCCCCCccchhhH
Q 002315 110 FCRLKVLELRGCDLSTSAAKGL 131 (937)
Q Consensus 110 L~~L~~LdLS~N~Ls~~lp~~L 131 (937)
+++|++|+|++|.|+...+..+
T Consensus 1 ~~~L~~L~l~~n~i~~~g~~~l 22 (24)
T PF13516_consen 1 NPNLETLDLSNNQITDEGASAL 22 (24)
T ss_dssp -TT-SEEE-TSSBEHHHHHHHH
T ss_pred CCCCCEEEccCCcCCHHHHHHh
Confidence 3688899999998876555544
No 84
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=65.89 E-value=5.3 Score=27.85 Aligned_cols=19 Identities=37% Similarity=0.536 Sum_probs=13.6
Q ss_pred CCCCCEEEccCCCCCCCch
Q 002315 257 LKSLEGLDISYNIISTFSE 275 (937)
Q Consensus 257 L~sL~~LdLS~N~Ls~l~~ 275 (937)
+++|+.|+|++|.|+.+|.
T Consensus 1 L~~L~~L~L~~N~l~~lp~ 19 (26)
T smart00369 1 LPNLRELDLSNNQLSSLPP 19 (26)
T ss_pred CCCCCEEECCCCcCCcCCH
Confidence 4567777777777777764
No 85
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=65.89 E-value=5.3 Score=27.85 Aligned_cols=19 Identities=37% Similarity=0.536 Sum_probs=13.6
Q ss_pred CCCCCEEEccCCCCCCCch
Q 002315 257 LKSLEGLDISYNIISTFSE 275 (937)
Q Consensus 257 L~sL~~LdLS~N~Ls~l~~ 275 (937)
+++|+.|+|++|.|+.+|.
T Consensus 1 L~~L~~L~L~~N~l~~lp~ 19 (26)
T smart00370 1 LPNLRELDLSNNQLSSLPP 19 (26)
T ss_pred CCCCCEEECCCCcCCcCCH
Confidence 4567777777777777764
No 86
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=64.41 E-value=5.6 Score=27.71 Aligned_cols=18 Identities=44% Similarity=0.612 Sum_probs=11.3
Q ss_pred CCCCEEECCCCCCCCccc
Q 002315 213 VNLKHLDLGFNNLRSIAA 230 (937)
Q Consensus 213 ~~L~~LdLS~N~Lt~L~~ 230 (937)
++|+.|+|++|.|+.+|.
T Consensus 2 ~~L~~L~L~~N~l~~lp~ 19 (26)
T smart00369 2 PNLRELDLSNNQLSSLPP 19 (26)
T ss_pred CCCCEEECCCCcCCcCCH
Confidence 456666666666666654
No 87
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=64.41 E-value=5.6 Score=27.71 Aligned_cols=18 Identities=44% Similarity=0.612 Sum_probs=11.3
Q ss_pred CCCCEEECCCCCCCCccc
Q 002315 213 VNLKHLDLGFNNLRSIAA 230 (937)
Q Consensus 213 ~~L~~LdLS~N~Lt~L~~ 230 (937)
++|+.|+|++|.|+.+|.
T Consensus 2 ~~L~~L~L~~N~l~~lp~ 19 (26)
T smart00370 2 PNLRELDLSNNQLSSLPP 19 (26)
T ss_pred CCCCEEECCCCcCCcCCH
Confidence 456666666666666654
No 88
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=53.39 E-value=12 Score=26.97 Aligned_cols=15 Identities=53% Similarity=0.784 Sum_probs=6.7
Q ss_pred CCcEEECCCCCCCCC
Q 002315 192 AVETLDLSRNKFAKV 206 (937)
Q Consensus 192 ~L~~LdLs~N~L~~l 206 (937)
+|+.|+|+.|+|+.+
T Consensus 3 ~L~~L~L~~NkI~~I 17 (26)
T smart00365 3 NLEELDLSQNKIKKI 17 (26)
T ss_pred ccCEEECCCCcccee
Confidence 344444444444433
No 89
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=52.86 E-value=9.8 Score=27.32 Aligned_cols=17 Identities=41% Similarity=0.528 Sum_probs=11.2
Q ss_pred CCCCEEEccCCCCCCCc
Q 002315 258 KSLEGLDISYNIISTFS 274 (937)
Q Consensus 258 ~sL~~LdLS~N~Ls~l~ 274 (937)
++|+.|+|++|+|+.+.
T Consensus 2 ~~L~~L~L~~NkI~~IE 18 (26)
T smart00365 2 TNLEELDLSQNKIKKIE 18 (26)
T ss_pred CccCEEECCCCccceec
Confidence 46667777777766654
No 90
>PHA02858 EIF2a-like PKR inhibitor; Provisional
Probab=49.85 E-value=28 Score=32.06 Aligned_cols=70 Identities=20% Similarity=0.339 Sum_probs=53.0
Q ss_pred cceEEEEEecCCcccceeEEEEeecCCeeEEEEEeeeecCCcccc--cccccccchhhHHHhhhc--cceEEEEEeecC
Q 002315 827 QYTVCWILEQDFMHRGREVAVLRSSENKFYVLLFGVTVDGTGSIL--NLLGCHKIEDIREVLIGL--GLQVLRVSTEMG 901 (937)
Q Consensus 827 ~~~~~~~~~~~~~~~~~e~~~l~~s~~k~~~ll~~~~~~~~~~~~--~~l~~~~~~~~~~v~~g~--glq~~r~~~~~~ 901 (937)
+-|+||.|-..-+.+. .|+ .-.+.-+||=|.+-. -.|-|+ +=|.--|++.+++.+||= =-||+||-=+-|
T Consensus 6 ~lafcy~~P~v~dvv~-~Vv--~i~d~~~YV~LleY~--iegmIl~~selsr~rirsi~kllVGk~e~v~ViRVDk~KG 79 (86)
T PHA02858 6 DLAFCYVFPNINEVTK-GIV--FVKDNIFYVKLIDYG--LEALIVNYVNVNADRAEKLKKKLVGKTINVQVIRTDKLKG 79 (86)
T ss_pred eeEEEEecCCCCeEEE-EEE--EEeccEEEEEEecCc--cceEEecHHHHhHHHHHhhhhhhcCCeeEEEEEEECCCCC
Confidence 5689999998888886 444 567899999999985 445554 667788999999999773 467888754433
No 91
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=46.78 E-value=17 Score=38.93 Aligned_cols=82 Identities=21% Similarity=0.161 Sum_probs=49.8
Q ss_pred ccccccccCCCCCcchHHHHHhcCCCCCcEEEccCCCCCCC-CCCCCC-CCCCCcEEEeeCC-CCCccchhhHhhhhhhh
Q 002315 62 YLRAYVSDLGDHRALEQLRRILKLLTSLKVVSALPPPARDP-TPLSLL-PFCRLKVLELRGC-DLSTSAAKGLLELRHTL 138 (937)
Q Consensus 62 ~L~l~vLdLs~n~~le~Lp~~L~~L~~Lk~LdLs~N~Is~~-iP~sLs-~L~~L~~LdLS~N-~Ls~~lp~~L~~L~~Ll 138 (937)
.+.+..+|-++.....+=-..+..++.|+.|.+.++.-.+- .-.-++ ..++|+.|+|++| +||......+..+++|.
T Consensus 100 ~~~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr 179 (221)
T KOG3864|consen 100 NVKIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLR 179 (221)
T ss_pred cceEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhH
Confidence 33444555555444333334567788888888866542110 001111 3589999999987 57766666777777777
Q ss_pred hhhhc
Q 002315 139 EKIIC 143 (937)
Q Consensus 139 ~LlL~ 143 (937)
.+.+.
T Consensus 180 ~L~l~ 184 (221)
T KOG3864|consen 180 RLHLY 184 (221)
T ss_pred HHHhc
Confidence 66654
No 92
>PF15410 PH_9: Pleckstrin homology domain; PDB: 1WJM_A 1BTN_A 1MPH_A.
Probab=41.19 E-value=26 Score=33.82 Aligned_cols=30 Identities=23% Similarity=0.406 Sum_probs=23.5
Q ss_pred EEEEEeecCcEEEEEeccHHHHHHHhhhee
Q 002315 893 VLRVSTEMGATYLLMTRSIEKSRQLFCTLQ 922 (937)
Q Consensus 893 ~~r~~~~~~~~~~~~t~~~~~~~~~~~~~~ 922 (937)
|.||...+|..|||-|.+.|+..+=+..|+
T Consensus 86 VFrL~~~dg~e~Lfqa~~~~~m~~Wi~~IN 115 (119)
T PF15410_consen 86 VFRLRTADGSEYLFQASDEEEMNEWIDAIN 115 (119)
T ss_dssp EEEEE-TTS-EEEEE-SSHHHHHHHHHHHH
T ss_pred EEEEEeCCCCEEEEECCCHHHHHHHHHHHh
Confidence 789999999999999999999888666554
No 93
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=40.10 E-value=18 Score=26.16 Aligned_cols=18 Identities=33% Similarity=0.552 Sum_probs=12.3
Q ss_pred CCCCEEEccCCCCCCCch
Q 002315 258 KSLEGLDISYNIISTFSE 275 (937)
Q Consensus 258 ~sL~~LdLS~N~Ls~l~~ 275 (937)
++|+.|++++|+|+.+|.
T Consensus 2 ~~L~~L~vs~N~Lt~LPe 19 (26)
T smart00364 2 PSLKELNVSNNQLTSLPE 19 (26)
T ss_pred cccceeecCCCccccCcc
Confidence 356777777777777664
No 94
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=35.79 E-value=28 Score=25.04 Aligned_cols=18 Identities=28% Similarity=0.346 Sum_probs=13.5
Q ss_pred CCCcEEEeeCCCCCccch
Q 002315 111 CRLKVLELRGCDLSTSAA 128 (937)
Q Consensus 111 ~~L~~LdLS~N~Ls~~lp 128 (937)
++|++|+|++|.|.....
T Consensus 2 ~~L~~LdL~~N~i~~~G~ 19 (28)
T smart00368 2 PSLRELDLSNNKLGDEGA 19 (28)
T ss_pred CccCEEECCCCCCCHHHH
Confidence 578889999998875333
No 95
>KOG4242 consensus Predicted myosin-I-binding protein [Cell motility]
Probab=21.60 E-value=3.5e+02 Score=32.77 Aligned_cols=23 Identities=22% Similarity=0.300 Sum_probs=16.0
Q ss_pred CCCCCcEEEccCCCCCCCCCCCC
Q 002315 85 LLTSLKVVSALPPPARDPTPLSL 107 (937)
Q Consensus 85 ~L~~Lk~LdLs~N~Is~~iP~sL 107 (937)
.-+.+++++++.|.+....|..|
T Consensus 163 pnpr~r~~dls~npi~dkvpihl 185 (553)
T KOG4242|consen 163 PNPRARQHDLSPNPIGDKVPIHL 185 (553)
T ss_pred CcchhhhhccCCCcccccCCccc
Confidence 34567888888888876655444
Done!