Query 002315
Match_columns 937
No_of_seqs 622 out of 3349
Neff 5.9
Searched_HMMs 29240
Date Mon Mar 25 21:23:37 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002315.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/002315hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3o6n_A APL1; leucine-rich repe 99.9 8.7E-25 3E-29 244.7 18.5 293 25-327 44-356 (390)
2 3v47_A TOLL-like receptor 5B a 99.9 2.1E-24 7.4E-29 245.1 17.6 300 24-327 28-412 (455)
3 3oja_B Anopheles plasmodium-re 99.9 2.8E-24 9.7E-29 255.0 18.9 293 25-327 50-362 (597)
4 2id5_A Lingo-1, leucine rich r 99.9 6.1E-24 2.1E-28 243.8 17.6 278 24-328 30-338 (477)
5 4fmz_A Internalin; leucine ric 99.9 6.3E-23 2.1E-27 225.2 24.2 275 25-324 43-325 (347)
6 3zyi_A Leucine-rich repeat-con 99.9 1.6E-23 5.5E-28 239.7 17.1 229 87-329 75-309 (452)
7 3zyj_A Leucine-rich repeat-con 99.9 1.7E-23 5.7E-28 238.7 16.6 239 76-330 55-299 (440)
8 2id5_A Lingo-1, leucine rich r 99.9 3.7E-23 1.3E-27 237.3 19.1 286 25-324 55-357 (477)
9 4fmz_A Internalin; leucine ric 99.9 2.8E-22 9.7E-27 219.9 24.1 233 66-325 69-302 (347)
10 3t6q_A CD180 antigen; protein- 99.9 8.6E-23 2.9E-27 240.6 21.0 289 27-329 255-566 (606)
11 3zyj_A Leucine-rich repeat-con 99.9 5.1E-23 1.7E-27 234.7 18.4 226 66-301 67-297 (440)
12 4eco_A Uncharacterized protein 99.9 1.6E-23 5.3E-28 250.9 13.8 241 74-323 194-470 (636)
13 2z7x_B TOLL-like receptor 1, v 99.9 9.7E-23 3.3E-27 236.1 19.9 159 165-330 321-488 (520)
14 3zyi_A Leucine-rich repeat-con 99.9 5.7E-23 2E-27 235.1 17.2 227 65-301 77-308 (452)
15 3rgz_A Protein brassinosteroid 99.9 2.7E-23 9.4E-28 253.7 15.0 246 65-324 396-718 (768)
16 4ecn_A Leucine-rich repeat pro 99.9 1.4E-22 4.7E-27 251.0 20.5 238 79-323 440-710 (876)
17 1xku_A Decorin; proteoglycan, 99.9 2.3E-22 7.9E-27 220.0 19.6 267 27-324 32-307 (330)
18 1ogq_A PGIP-2, polygalacturona 99.9 1.1E-23 3.7E-28 230.4 8.9 245 64-324 51-305 (313)
19 1xku_A Decorin; proteoglycan, 99.9 3.5E-22 1.2E-26 218.6 19.6 238 66-325 34-278 (330)
20 2z81_A CD282 antigen, TOLL-lik 99.9 2.4E-22 8.3E-27 233.7 18.7 155 167-327 333-514 (549)
21 1ziw_A TOLL-like receptor 3; i 99.9 4.7E-22 1.6E-26 237.8 21.7 241 82-326 324-625 (680)
22 3v47_A TOLL-like receptor 5B a 99.9 2.9E-22 1E-26 227.6 18.8 275 25-300 53-412 (455)
23 3t6q_A CD180 antigen; protein- 99.9 8.3E-22 2.8E-26 232.3 22.8 270 25-295 56-412 (606)
24 4eco_A Uncharacterized protein 99.9 1.2E-22 4.1E-27 243.3 15.9 275 25-317 205-543 (636)
25 1o6v_A Internalin A; bacterial 99.9 6.3E-22 2.2E-26 227.4 21.1 270 25-325 45-324 (466)
26 3o53_A Protein LRIM1, AGAP0063 99.9 6.5E-23 2.2E-27 224.2 12.2 236 68-327 15-254 (317)
27 3o6n_A APL1; leucine-rich repe 99.9 4.9E-22 1.7E-26 222.4 17.7 202 82-296 64-285 (390)
28 2ft3_A Biglycan; proteoglycan, 99.9 3E-22 1E-26 219.5 15.7 262 28-324 35-308 (332)
29 1ozn_A Reticulon 4 receptor; N 99.9 2.9E-22 1E-26 214.7 14.6 205 86-300 31-242 (285)
30 3vq2_A TLR4, TOLL-like recepto 99.9 3.6E-22 1.2E-26 235.4 16.5 294 26-323 32-461 (606)
31 2z66_A Variable lymphocyte rec 99.9 5.1E-22 1.8E-26 214.7 16.0 236 76-327 19-265 (306)
32 1ogq_A PGIP-2, polygalacturona 99.9 1.7E-23 5.7E-28 228.9 4.0 245 27-298 51-306 (313)
33 1o6v_A Internalin A; bacterial 99.9 2.3E-21 8E-26 222.6 22.0 261 24-324 66-345 (466)
34 4ecn_A Leucine-rich repeat pro 99.9 8E-22 2.7E-26 244.1 19.1 291 24-325 489-842 (876)
35 3rgz_A Protein brassinosteroid 99.9 4.1E-22 1.4E-26 243.3 15.9 226 86-325 393-695 (768)
36 2z66_A Variable lymphocyte rec 99.9 1.2E-22 4.2E-27 219.6 9.9 267 30-324 11-288 (306)
37 2ft3_A Biglycan; proteoglycan, 99.9 7.3E-22 2.5E-26 216.5 16.1 237 65-324 35-278 (332)
38 3oja_B Anopheles plasmodium-re 99.9 1.1E-21 3.8E-26 232.7 18.0 226 82-324 70-338 (597)
39 2z80_A TOLL-like receptor 2, v 99.9 3.1E-22 1.1E-26 221.3 12.2 271 30-327 35-318 (353)
40 3a79_B TLR6, VLRB.59, TOLL-lik 99.9 3.9E-21 1.3E-25 225.7 21.7 160 165-330 350-517 (562)
41 3vq2_A TLR4, TOLL-like recepto 99.9 5.2E-22 1.8E-26 233.9 14.1 242 67-328 311-563 (606)
42 1ziw_A TOLL-like receptor 3; i 99.9 1.3E-21 4.5E-26 234.0 15.9 269 24-300 327-626 (680)
43 2z81_A CD282 antigen, TOLL-lik 99.9 3.8E-21 1.3E-25 223.6 18.8 288 25-323 25-464 (549)
44 3oja_A Leucine-rich immune mol 99.9 9.4E-22 3.2E-26 228.5 13.2 219 85-327 32-254 (487)
45 2z80_A TOLL-like receptor 2, v 99.9 7.2E-22 2.5E-26 218.4 11.3 252 24-299 50-317 (353)
46 2z63_A TOLL-like receptor 4, v 99.9 6.6E-21 2.3E-25 222.1 19.5 136 187-326 392-534 (570)
47 1p9a_G Platelet glycoprotein I 99.9 1.1E-20 3.7E-25 205.0 19.9 202 83-300 6-212 (290)
48 2z63_A TOLL-like receptor 4, v 99.9 2.7E-21 9.2E-26 225.4 15.6 154 166-323 280-458 (570)
49 2z7x_B TOLL-like receptor 1, v 99.9 7.8E-21 2.7E-25 220.1 19.0 97 26-125 21-129 (520)
50 4fcg_A Uncharacterized protein 99.9 6.1E-21 2.1E-25 210.3 17.0 224 85-324 79-315 (328)
51 3o53_A Protein LRIM1, AGAP0063 99.8 3.7E-22 1.3E-26 218.1 7.2 229 65-317 36-269 (317)
52 4g8a_A TOLL-like receptor 4; l 99.8 2.1E-20 7.2E-25 219.1 22.6 118 209-330 465-587 (635)
53 4fcg_A Uncharacterized protein 99.8 1.9E-21 6.4E-26 214.4 12.6 230 65-299 83-317 (328)
54 1ozn_A Reticulon 4 receptor; N 99.8 2.4E-20 8.2E-25 199.9 20.3 226 89-330 13-245 (285)
55 3oja_A Leucine-rich immune mol 99.8 8.7E-22 3E-26 228.8 8.6 236 31-298 12-252 (487)
56 1wwl_A Monocyte differentiatio 99.8 3.3E-21 1.1E-25 210.2 12.5 202 85-324 93-310 (312)
57 2z62_A TOLL-like receptor 4, v 99.8 7.9E-21 2.7E-25 202.6 14.6 203 87-299 28-240 (276)
58 3j0a_A TOLL-like receptor 5; m 99.8 2.5E-20 8.5E-25 229.9 20.0 291 24-323 22-394 (844)
59 1h6u_A Internalin H; cell adhe 99.8 1.1E-20 3.7E-25 206.4 14.7 218 84-323 38-255 (308)
60 2o6q_A Variable lymphocyte rec 99.8 8.1E-20 2.8E-24 194.9 19.7 133 166-299 83-221 (270)
61 3a79_B TLR6, VLRB.59, TOLL-lik 99.8 3.8E-20 1.3E-24 217.3 17.6 128 188-323 350-486 (562)
62 1wwl_A Monocyte differentiatio 99.8 5.3E-22 1.8E-26 216.4 -0.0 154 166-325 119-289 (312)
63 3g06_A SSPH2 (leucine-rich rep 99.8 2.7E-19 9.2E-24 214.3 22.1 258 26-332 40-306 (622)
64 3j0a_A TOLL-like receptor 5; m 99.8 1.7E-19 6E-24 222.4 20.9 288 24-324 46-415 (844)
65 3bz5_A Internalin-J, INLJ; leu 99.8 3.3E-19 1.1E-23 205.7 21.3 252 25-322 41-298 (457)
66 4g8a_A TOLL-like receptor 4; l 99.8 1.9E-19 6.5E-24 211.0 18.8 85 236-324 469-556 (635)
67 1jl5_A Outer protein YOPM; leu 99.8 1.1E-19 3.7E-24 209.6 14.6 258 26-324 11-291 (454)
68 2z62_A TOLL-like receptor 4, v 99.8 5.2E-19 1.8E-23 188.6 18.7 219 91-326 11-240 (276)
69 3bz5_A Internalin-J, INLJ; leu 99.8 8.1E-19 2.8E-23 202.4 21.3 220 68-323 47-267 (457)
70 1jl5_A Outer protein YOPM; leu 99.8 7.3E-19 2.5E-23 202.6 20.0 219 67-324 135-371 (454)
71 1p9a_G Platelet glycoprotein I 99.8 1E-18 3.4E-23 189.6 18.2 203 106-326 5-211 (290)
72 2ca6_A RAN GTPase-activating p 99.8 1.3E-20 4.3E-25 210.9 3.3 214 80-326 53-319 (386)
73 4glp_A Monocyte differentiatio 99.8 1.4E-19 4.9E-24 196.8 10.9 202 85-324 89-308 (310)
74 2xwt_C Thyrotropin receptor; s 99.8 3.8E-19 1.3E-23 185.9 13.3 186 76-274 23-221 (239)
75 1h6u_A Internalin H; cell adhe 99.8 1.1E-18 3.8E-23 190.4 15.7 207 93-324 25-231 (308)
76 3rfs_A Internalin B, repeat mo 99.8 1.5E-18 5.2E-23 185.5 15.8 179 83-299 37-221 (272)
77 1h6t_A Internalin B; cell adhe 99.8 1.3E-18 4.4E-23 188.6 14.7 198 84-325 43-240 (291)
78 3g06_A SSPH2 (leucine-rich rep 99.8 3.9E-18 1.3E-22 204.3 20.2 223 66-323 43-274 (622)
79 2ca6_A RAN GTPase-activating p 99.8 1.9E-19 6.5E-24 201.3 7.6 223 76-326 21-290 (386)
80 2o6q_A Variable lymphocyte rec 99.8 3.9E-18 1.3E-22 181.9 15.7 177 87-272 37-219 (270)
81 3m19_A Variable lymphocyte rec 99.8 1.5E-17 5E-22 175.6 18.4 175 87-298 14-194 (251)
82 4glp_A Monocyte differentiatio 99.8 5.3E-19 1.8E-23 192.3 7.4 196 65-297 93-308 (310)
83 3goz_A Leucine-rich repeat-con 99.7 1.1E-18 3.7E-23 194.2 8.9 256 69-330 4-304 (362)
84 1z7x_W Ribonuclease inhibitor; 99.7 8.1E-19 2.8E-23 199.3 7.6 267 25-296 27-354 (461)
85 2xwt_C Thyrotropin receptor; s 99.7 7.9E-18 2.7E-22 175.9 13.5 201 102-321 25-237 (239)
86 1z7x_W Ribonuclease inhibitor; 99.7 9.6E-19 3.3E-23 198.7 4.8 257 66-328 116-416 (461)
87 1m9s_A Internalin B; cell inva 99.7 1.4E-17 4.7E-22 198.9 13.8 176 83-300 39-214 (605)
88 3m19_A Variable lymphocyte rec 99.7 5.5E-17 1.9E-21 171.1 15.3 170 68-273 19-194 (251)
89 3rfs_A Internalin B, repeat mo 99.7 7.1E-17 2.4E-21 172.5 15.9 197 88-326 20-221 (272)
90 3cvr_A Invasion plasmid antige 99.7 5E-17 1.7E-21 192.9 15.6 181 87-326 59-246 (571)
91 3goz_A Leucine-rich repeat-con 99.7 1.1E-17 3.7E-22 186.2 8.0 226 68-298 27-299 (362)
92 1h6t_A Internalin B; cell adhe 99.7 6.8E-17 2.3E-21 175.1 13.6 185 93-324 30-214 (291)
93 1xeu_A Internalin C; cellular 99.7 1E-17 3.6E-22 179.0 6.5 171 86-299 18-188 (263)
94 1dce_A Protein (RAB geranylger 99.7 2.2E-19 7.4E-24 212.9 -7.4 198 108-317 346-567 (567)
95 2ast_B S-phase kinase-associat 99.7 1.4E-17 4.8E-22 181.5 6.8 238 67-324 51-307 (336)
96 4ay9_X Follicle-stimulating ho 99.7 8.4E-17 2.9E-21 178.3 12.8 224 76-319 21-255 (350)
97 1xeu_A Internalin C; cellular 99.7 1.7E-16 5.8E-21 169.6 12.7 171 133-325 17-187 (263)
98 3cvr_A Invasion plasmid antige 99.7 1.1E-15 3.6E-20 181.5 17.6 142 168-324 80-221 (571)
99 2xot_A Amphoterin-induced prot 99.6 3.3E-16 1.1E-20 174.4 11.9 175 90-300 21-206 (361)
100 1m9s_A Internalin B; cell inva 99.6 7.5E-16 2.6E-20 184.0 15.2 189 89-324 23-211 (605)
101 3e6j_A Variable lymphocyte rec 99.6 1.4E-15 4.7E-20 159.0 14.8 131 168-299 40-175 (229)
102 2v9t_B SLIT homolog 2 protein 99.6 3E-15 1E-19 155.6 15.5 130 169-299 33-168 (220)
103 2v9t_B SLIT homolog 2 protein 99.6 2.5E-15 8.7E-20 156.2 13.3 154 171-330 14-172 (220)
104 4ezg_A Putative uncharacterize 99.6 1.6E-15 5.3E-20 154.4 11.1 150 166-324 42-195 (197)
105 4ezg_A Putative uncharacterize 99.6 2.1E-15 7.2E-20 153.5 12.0 106 188-296 85-194 (197)
106 2xot_A Amphoterin-induced prot 99.6 3.9E-15 1.3E-19 165.8 14.1 157 169-329 40-208 (361)
107 2v70_A SLIT-2, SLIT homolog 2 99.6 4.2E-15 1.5E-19 154.5 13.0 131 169-300 33-170 (220)
108 2ast_B S-phase kinase-associat 99.6 4.2E-16 1.4E-20 169.8 5.2 223 86-326 46-287 (336)
109 2v70_A SLIT-2, SLIT homolog 2 99.6 8.8E-15 3E-19 152.1 14.5 155 170-330 13-173 (220)
110 3e6j_A Variable lymphocyte rec 99.6 1.2E-14 4E-19 151.9 15.4 151 169-326 20-175 (229)
111 1dce_A Protein (RAB geranylger 99.6 2.2E-17 7.6E-22 195.7 -6.6 200 84-290 346-567 (567)
112 4ay9_X Follicle-stimulating ho 99.6 1.8E-15 6.1E-20 167.7 9.0 235 29-293 12-256 (350)
113 2o6s_A Variable lymphocyte rec 99.6 1.5E-14 5E-19 147.9 13.1 131 168-299 28-164 (208)
114 2o6s_A Variable lymphocyte rec 99.5 1.5E-14 5.2E-19 147.8 11.7 147 87-271 28-178 (208)
115 1ds9_A Outer arm dynein; leuci 99.5 1.5E-16 5.1E-21 162.1 -4.1 162 169-332 24-194 (198)
116 3ogk_B Coronatine-insensitive 99.5 2E-15 6.7E-20 176.9 3.3 157 167-325 341-528 (592)
117 2ell_A Acidic leucine-rich nuc 99.5 3.3E-14 1.1E-18 140.4 9.7 133 167-299 23-163 (168)
118 2wfh_A SLIT homolog 2 protein 99.5 9.7E-14 3.3E-18 141.6 12.4 128 171-301 13-144 (193)
119 1a9n_A U2A', U2A'; complex (nu 99.5 3.6E-14 1.2E-18 141.8 9.0 135 189-324 17-154 (176)
120 1w8a_A SLIT protein; signaling 99.5 1E-13 3.5E-18 140.9 12.2 128 170-300 10-143 (192)
121 3ogk_B Coronatine-insensitive 99.5 1.4E-14 4.8E-19 169.7 4.3 285 26-322 220-550 (592)
122 4b8c_D Glucose-repressible alc 99.5 3E-14 1E-18 173.6 7.0 178 79-296 216-404 (727)
123 2je0_A Acidic leucine-rich nuc 99.5 1E-13 3.4E-18 134.2 8.6 125 167-291 16-148 (149)
124 2ell_A Acidic leucine-rich nuc 99.4 1.4E-13 5E-18 135.8 9.2 136 188-324 21-161 (168)
125 1a9n_A U2A', U2A'; complex (nu 99.4 1.3E-13 4.4E-18 137.7 7.6 131 166-296 17-153 (176)
126 2o6r_A Variable lymphocyte rec 99.4 1.1E-12 3.9E-17 130.6 14.0 127 170-299 9-140 (177)
127 2je0_A Acidic leucine-rich nuc 99.4 4.6E-13 1.6E-17 129.5 8.8 129 189-318 15-148 (149)
128 2p1m_B Transport inhibitor res 99.4 8.8E-14 3E-18 162.8 4.1 206 109-326 287-522 (594)
129 2wfh_A SLIT homolog 2 protein 99.4 3.7E-12 1.3E-16 129.9 14.3 131 194-329 13-145 (193)
130 4b8c_D Glucose-repressible alc 99.4 3.7E-13 1.3E-17 164.0 6.5 132 166-298 222-356 (727)
131 1w8a_A SLIT protein; signaling 99.3 9.9E-12 3.4E-16 126.2 13.7 130 194-329 11-145 (192)
132 1ds9_A Outer arm dynein; leuci 99.3 1.1E-14 3.7E-19 148.3 -9.3 61 236-298 115-187 (198)
133 2p1m_B Transport inhibitor res 99.3 3.6E-13 1.2E-17 157.6 2.2 236 77-321 279-542 (594)
134 3sb4_A Hypothetical leucine ri 99.3 2.6E-12 8.9E-17 140.9 7.5 82 212-296 225-310 (329)
135 2o6r_A Variable lymphocyte rec 99.2 8E-11 2.7E-15 117.2 14.6 130 193-327 9-141 (177)
136 3g39_A Variable lymphocyte rec 99.2 7.2E-11 2.5E-15 117.8 11.9 104 194-300 12-119 (170)
137 3sb4_A Hypothetical leucine ri 99.2 4.8E-11 1.7E-15 130.8 10.5 84 235-324 225-311 (329)
138 2r9u_A Variable lymphocyte rec 99.2 1.4E-10 4.8E-15 116.4 11.8 87 213-300 33-122 (174)
139 3g39_A Variable lymphocyte rec 99.1 3.4E-10 1.2E-14 112.9 11.1 104 169-274 10-118 (170)
140 2r9u_A Variable lymphocyte rec 99.1 4.2E-10 1.5E-14 112.8 11.8 103 170-274 14-121 (174)
141 3un9_A NLR family member X1; l 99.1 5.3E-11 1.8E-15 133.9 4.0 155 168-325 101-285 (372)
142 2ifg_A High affinity nerve gro 99.0 3.4E-10 1.2E-14 124.3 9.9 106 172-301 12-121 (347)
143 4fdw_A Leucine rich hypothetic 99.0 2.5E-09 8.5E-14 121.5 13.2 218 82-322 153-382 (401)
144 2ifg_A High affinity nerve gro 99.0 5.1E-10 1.8E-14 122.9 7.3 86 164-249 27-116 (347)
145 4fdw_A Leucine rich hypothetic 99.0 3.8E-09 1.3E-13 120.0 14.2 217 82-323 131-358 (401)
146 3un9_A NLR family member X1; l 98.9 1.6E-10 5.4E-15 130.1 1.3 178 86-296 71-283 (372)
147 2ra8_A Uncharacterized protein 98.3 5.4E-07 1.8E-11 101.1 7.8 156 78-269 163-341 (362)
148 3rw6_A Nuclear RNA export fact 98.3 1.7E-07 5.8E-12 101.1 1.2 103 218-323 148-262 (267)
149 1io0_A Tropomodulin; LRR prote 98.2 5.7E-07 1.9E-11 91.0 4.2 122 76-226 25-164 (185)
150 2ra8_A Uncharacterized protein 98.2 7.9E-07 2.7E-11 99.8 5.7 40 257-296 278-320 (362)
151 1io0_A Tropomodulin; LRR prote 98.1 1.8E-06 6.3E-11 87.2 4.7 59 168-226 65-136 (185)
152 4fs7_A Uncharacterized protein 98.0 2.5E-05 8.6E-10 87.5 13.1 141 168-318 230-374 (394)
153 4gt6_A Cell surface protein; l 98.0 0.00011 3.7E-09 82.3 17.0 105 209-321 261-368 (394)
154 3rw6_A Nuclear RNA export fact 97.7 5.3E-06 1.8E-10 89.4 0.7 80 189-289 168-257 (267)
155 4fs7_A Uncharacterized protein 97.7 0.0001 3.4E-09 82.6 9.7 205 81-293 156-376 (394)
156 4gt6_A Cell surface protein; l 97.6 0.00053 1.8E-08 76.7 14.4 125 186-321 260-389 (394)
157 4h09_A Hypothetical leucine ri 97.2 0.0024 8.1E-08 70.7 14.0 102 186-291 212-318 (379)
158 4h09_A Hypothetical leucine ri 97.2 0.005 1.7E-07 68.0 16.4 102 186-291 235-341 (379)
159 3e4g_A ATP synthase subunit S, 96.9 0.00038 1.3E-08 70.5 3.1 34 191-224 61-96 (176)
160 1pgv_A TMD-1, tropomodulin TMD 96.9 0.00083 2.8E-08 69.2 5.6 119 78-225 32-169 (197)
161 3rfe_A Platelet glycoprotein I 96.7 0.0021 7E-08 61.5 6.5 61 239-301 11-73 (130)
162 3e4g_A ATP synthase subunit S, 96.7 0.0023 7.9E-08 64.7 6.9 80 213-294 61-150 (176)
163 1pgv_A TMD-1, tropomodulin TMD 96.5 0.0029 9.8E-08 65.2 6.0 109 186-294 36-168 (197)
164 3rfe_A Platelet glycoprotein I 95.2 0.021 7.3E-07 54.4 5.7 53 172-226 12-68 (130)
165 4fxw_B Splicing factor 1; UHM, 42.8 13 0.00046 35.2 2.8 30 595-624 72-115 (124)
No 1
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.92 E-value=8.7e-25 Score=244.70 Aligned_cols=293 Identities=14% Similarity=0.142 Sum_probs=225.5
Q ss_pred hcCCcEEEecCCCccchHhh-hhhcccchhccCCC-CCc---------ccccccccCCCCCcchHHHHHhcCCCCCcEEE
Q 002315 25 IEGSIVLKLNPAGLHYVQSR-LEALRELERLLAGA-PLD---------YLRAYVSDLGDHRALEQLRRILKLLTSLKVVS 93 (937)
Q Consensus 25 L~~l~~L~L~~~~L~~Lp~~-L~~L~~Le~L~~g~-~L~---------~L~l~vLdLs~n~~le~Lp~~L~~L~~Lk~Ld 93 (937)
+.+++.|.+..+.+..+|.. +..+++|+.|.... .+. .-.+..+++++|......|..+..+++|++|+
T Consensus 44 l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 123 (390)
T 3o6n_A 44 LNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLV 123 (390)
T ss_dssp GCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred cCCceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEE
Confidence 57788999999999988865 46666666655421 111 11234677777776555566788888888888
Q ss_pred ccCCCCCCCCCCCCCCCCCCcEEEeeCCCCCccchhhHhhhhhhhhhhhccCCCcccchhcccchhc-------ccCCCC
Q 002315 94 ALPPPARDPTPLSLLPFCRLKVLELRGCDLSTSAAKGLLELRHTLEKIICHNSTNALRHVFASRIVE-------IKDSPQ 166 (937)
Q Consensus 94 Ls~N~Is~~iP~sLs~L~~L~~LdLS~N~Ls~~lp~~L~~L~~Ll~LlL~~N~L~~L~~l~~~~i~~-------l~~l~~ 166 (937)
|++|.+....+..|..+++|++|+|++|.+++..|..+..+++|..+.+.+|.+..+.......+.. +..+..
T Consensus 124 L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~L~~L~l~~n~l~~~~~ 203 (390)
T 3o6n_A 124 LERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLAI 203 (390)
T ss_dssp CCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBCCGGGCTTCSEEECCSSCCSEEEC
T ss_pred CCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCccccccccccceeecccccccccCC
Confidence 8888888665556788888888888888888877777888888888888888776553221111111 111123
Q ss_pred CCCccEEEccCCcCccchhhcCCCCCCcEEECCCCCCCCCcCcCCCCCCCEEECCCCCCCCcc-cccccccccceecccC
Q 002315 167 WNRLSFVSCSCNRLVIMDESLQLLPAVETLDLSRNKFAKVDNLRKCVNLKHLDLGFNNLRSIA-AFSEVSCHIVKLVLRN 245 (937)
Q Consensus 167 l~~L~~L~Ls~N~Ls~LP~sL~~L~~L~~LdLs~N~L~~l~~L~~L~~L~~LdLS~N~Lt~L~-~l~~~l~sL~~L~Ls~ 245 (937)
.+.|+.|++++|.+..+|.. .+++|+.|++++|.++.++.+..+++|+.|+|++|.++.++ ..+..+++|+.|+|++
T Consensus 204 ~~~L~~L~l~~n~l~~~~~~--~~~~L~~L~l~~n~l~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~ 281 (390)
T 3o6n_A 204 PIAVEELDASHNSINVVRGP--VNVELTILKLQHNNLTDTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISN 281 (390)
T ss_dssp CSSCSEEECCSSCCCEEECC--CCSSCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCS
T ss_pred CCcceEEECCCCeeeecccc--ccccccEEECCCCCCcccHHHcCCCCccEEECCCCcCCCcChhHccccccCCEEECCC
Confidence 45678888888888877653 35789999999999999888999999999999999999874 4556679999999999
Q ss_pred ccccccc-cCCCCCCCCEEEccCCCCCCCchhhhhcCCCCCCEEEecCCCCCCCcchhhhHhhhcCCCceeccCCccCCh
Q 002315 246 NALTTLR-GIENLKSLEGLDISYNIISTFSELEFLASLPYLLNLWLEGNPLCCSRWYRAQVFSYFAHPAKLKVDGKEIST 324 (937)
Q Consensus 246 N~Lt~Lp-~L~~L~sL~~LdLS~N~Ls~l~~l~~L~~L~sL~~L~Ls~NpLt~~~~~r~~~~~~l~~L~~L~LdgN~Is~ 324 (937)
|+|+.++ .+..+++|+.|+|++|.+..++ ..+..+++|+.|+|++|+++..+ +..++.|+.++|++|++.+
T Consensus 282 n~l~~~~~~~~~l~~L~~L~L~~n~l~~~~--~~~~~l~~L~~L~L~~N~i~~~~------~~~~~~L~~L~l~~N~~~~ 353 (390)
T 3o6n_A 282 NRLVALNLYGQPIPTLKVLDLSHNHLLHVE--RNQPQFDRLENLYLDHNSIVTLK------LSTHHTLKNLTLSHNDWDC 353 (390)
T ss_dssp SCCCEEECSSSCCTTCCEEECCSSCCCCCG--GGHHHHTTCSEEECCSSCCCCCC------CCTTCCCSEEECCSSCEEH
T ss_pred CcCcccCcccCCCCCCCEEECCCCcceecC--ccccccCcCCEEECCCCccceeC------chhhccCCEEEcCCCCccc
Confidence 9999987 5678999999999999999987 45778899999999999998654 4567899999999999998
Q ss_pred hhH
Q 002315 325 REL 327 (937)
Q Consensus 325 ~e~ 327 (937)
...
T Consensus 354 ~~~ 356 (390)
T 3o6n_A 354 NSL 356 (390)
T ss_dssp HHH
T ss_pred hhH
Confidence 653
No 2
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.91 E-value=2.1e-24 Score=245.15 Aligned_cols=300 Identities=19% Similarity=0.212 Sum_probs=224.5
Q ss_pred hhcCCcEEEecCCCccch-HhhhhhcccchhccCCCC-C----------cccccccccCCCCCcchHHHHHhcCCCCCcE
Q 002315 24 LIEGSIVLKLNPAGLHYV-QSRLEALRELERLLAGAP-L----------DYLRAYVSDLGDHRALEQLRRILKLLTSLKV 91 (937)
Q Consensus 24 lL~~l~~L~L~~~~L~~L-p~~L~~L~~Le~L~~g~~-L----------~~L~l~vLdLs~n~~le~Lp~~L~~L~~Lk~ 91 (937)
+...++.|++..+.+..+ |..+..+++|+.|....+ + ..-.+..+++++|...+..|..|.++++|++
T Consensus 28 l~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~ 107 (455)
T 3v47_A 28 LPAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEV 107 (455)
T ss_dssp CCTTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCE
T ss_pred CCCccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhhccCcccCCE
Confidence 345678899999888876 666777777776654221 1 1122446778877766666778888888888
Q ss_pred EEccCCCCCCCCCCC--CCCCCCCcEEEeeCCCCCccchhh-HhhhhhhhhhhhccCCCcccchhcccch----------
Q 002315 92 VSALPPPARDPTPLS--LLPFCRLKVLELRGCDLSTSAAKG-LLELRHTLEKIICHNSTNALRHVFASRI---------- 158 (937)
Q Consensus 92 LdLs~N~Is~~iP~s--Ls~L~~L~~LdLS~N~Ls~~lp~~-L~~L~~Ll~LlL~~N~L~~L~~l~~~~i---------- 158 (937)
|+|++|.+++..|.. |..+++|++|+|++|.+++..|.. +..+++|.++.+.+|.+..+.......+
T Consensus 108 L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l 187 (455)
T 3v47_A 108 LTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRL 187 (455)
T ss_dssp EECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEEEEEEC
T ss_pred EeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccChhhhhcccccccccccc
Confidence 888888887644443 888888888888888888766665 7788888888888887655432211111
Q ss_pred -----hcc----------cCCCCCCCccEEEccCCcCc-cchhhcC----------------------------------
Q 002315 159 -----VEI----------KDSPQWNRLSFVSCSCNRLV-IMDESLQ---------------------------------- 188 (937)
Q Consensus 159 -----~~l----------~~l~~l~~L~~L~Ls~N~Ls-~LP~sL~---------------------------------- 188 (937)
..+ ..+..+++|+.|++++|.+. .+|..+.
T Consensus 188 ~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~ 267 (455)
T 3v47_A 188 SSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNF 267 (455)
T ss_dssp TTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSCCCCTT
T ss_pred ccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeeccccccccccchhhhccCccc
Confidence 000 11224467999999999886 3333221
Q ss_pred -----CCCCCcEEECCCCCCCCC--cCcCCCCCCCEEECCCCCCCCccc-ccccccccceecccCccccccc--cCCCCC
Q 002315 189 -----LLPAVETLDLSRNKFAKV--DNLRKCVNLKHLDLGFNNLRSIAA-FSEVSCHIVKLVLRNNALTTLR--GIENLK 258 (937)
Q Consensus 189 -----~L~~L~~LdLs~N~L~~l--~~L~~L~~L~~LdLS~N~Lt~L~~-l~~~l~sL~~L~Ls~N~Lt~Lp--~L~~L~ 258 (937)
..++|+.|++++|.+..+ ..+..+++|+.|+|++|.|+.+++ .+..+++|+.|+|++|.|+.++ .+..++
T Consensus 268 ~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~ 347 (455)
T 3v47_A 268 TFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLD 347 (455)
T ss_dssp TTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCT
T ss_pred ccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcc
Confidence 125789999999998875 368899999999999999998754 5566799999999999999873 688999
Q ss_pred CCCEEEccCCCCCCCchhhhhcCCCCCCEEEecCCCCCCCcchhhhHhhhcCCCceeccCCccCChhhH
Q 002315 259 SLEGLDISYNIISTFSELEFLASLPYLLNLWLEGNPLCCSRWYRAQVFSYFAHPAKLKVDGKEISTREL 327 (937)
Q Consensus 259 sL~~LdLS~N~Ls~l~~l~~L~~L~sL~~L~Ls~NpLt~~~~~r~~~~~~l~~L~~L~LdgN~Is~~e~ 327 (937)
+|++|+|++|.|+.+++ ..+..+++|+.|+|++|.++..+ ...+..++.|+.++|++|++++...
T Consensus 348 ~L~~L~Ls~N~l~~~~~-~~~~~l~~L~~L~L~~N~l~~~~---~~~~~~l~~L~~L~l~~N~l~~~~~ 412 (455)
T 3v47_A 348 KLEVLDLSYNHIRALGD-QSFLGLPNLKELALDTNQLKSVP---DGIFDRLTSLQKIWLHTNPWDCSCP 412 (455)
T ss_dssp TCCEEECCSSCCCEECT-TTTTTCTTCCEEECCSSCCSCCC---TTTTTTCTTCCEEECCSSCBCCCTT
T ss_pred cCCEEECCCCcccccCh-hhccccccccEEECCCCccccCC---HhHhccCCcccEEEccCCCcccCCC
Confidence 99999999999998754 67889999999999999998655 3456788999999999999998764
No 3
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.91 E-value=2.8e-24 Score=254.99 Aligned_cols=293 Identities=14% Similarity=0.142 Sum_probs=229.3
Q ss_pred hcCCcEEEecCCCccchHhh-hhhcccchhccCCC-CCc---------ccccccccCCCCCcchHHHHHhcCCCCCcEEE
Q 002315 25 IEGSIVLKLNPAGLHYVQSR-LEALRELERLLAGA-PLD---------YLRAYVSDLGDHRALEQLRRILKLLTSLKVVS 93 (937)
Q Consensus 25 L~~l~~L~L~~~~L~~Lp~~-L~~L~~Le~L~~g~-~L~---------~L~l~vLdLs~n~~le~Lp~~L~~L~~Lk~Ld 93 (937)
+.+++.|.+..+.+..+|.. +..++.|+.|.... .+. .-.+..+++++|...+..|..|+.+++|++|+
T Consensus 50 l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 129 (597)
T 3oja_B 50 LNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLV 129 (597)
T ss_dssp GCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEE
Confidence 56778899999988888765 35566666554421 111 11345677888776665566788899999999
Q ss_pred ccCCCCCCCCCCCCCCCCCCcEEEeeCCCCCccchhhHhhhhhhhhhhhccCCCcccchhcccchhc-------ccCCCC
Q 002315 94 ALPPPARDPTPLSLLPFCRLKVLELRGCDLSTSAAKGLLELRHTLEKIICHNSTNALRHVFASRIVE-------IKDSPQ 166 (937)
Q Consensus 94 Ls~N~Is~~iP~sLs~L~~L~~LdLS~N~Ls~~lp~~L~~L~~Ll~LlL~~N~L~~L~~l~~~~i~~-------l~~l~~ 166 (937)
|++|.++...+..|..+++|++|+|++|.+++..|..|..+++|..|.+.+|.+..++......+.. +..+..
T Consensus 130 L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~L~l~~n~l~~l~~ 209 (597)
T 3oja_B 130 LERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLAI 209 (597)
T ss_dssp CCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCCGGGCTTCSEEECCSSCCSEEEC
T ss_pred eeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcChhhhhhhhhhhcccCccccccC
Confidence 9999988776667788999999999999998888888888899888999888876654222111111 111233
Q ss_pred CCCccEEEccCCcCccchhhcCCCCCCcEEECCCCCCCCCcCcCCCCCCCEEECCCCCCCCcc-cccccccccceecccC
Q 002315 167 WNRLSFVSCSCNRLVIMDESLQLLPAVETLDLSRNKFAKVDNLRKCVNLKHLDLGFNNLRSIA-AFSEVSCHIVKLVLRN 245 (937)
Q Consensus 167 l~~L~~L~Ls~N~Ls~LP~sL~~L~~L~~LdLs~N~L~~l~~L~~L~~L~~LdLS~N~Lt~L~-~l~~~l~sL~~L~Ls~ 245 (937)
...|+.|++++|.+..+|..+ .++|+.|+|++|.++.++.+..+++|+.|+|++|.|++++ ..+..+++|+.|+|++
T Consensus 210 ~~~L~~L~ls~n~l~~~~~~~--~~~L~~L~L~~n~l~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~ 287 (597)
T 3oja_B 210 PIAVEELDASHNSINVVRGPV--NVELTILKLQHNNLTDTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISN 287 (597)
T ss_dssp CTTCSEEECCSSCCCEEECSC--CSCCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTT
T ss_pred CchhheeeccCCccccccccc--CCCCCEEECCCCCCCCChhhccCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCC
Confidence 457888888888888776543 4689999999999999888999999999999999999874 4556779999999999
Q ss_pred ccccccc-cCCCCCCCCEEEccCCCCCCCchhhhhcCCCCCCEEEecCCCCCCCcchhhhHhhhcCCCceeccCCccCCh
Q 002315 246 NALTTLR-GIENLKSLEGLDISYNIISTFSELEFLASLPYLLNLWLEGNPLCCSRWYRAQVFSYFAHPAKLKVDGKEIST 324 (937)
Q Consensus 246 N~Lt~Lp-~L~~L~sL~~LdLS~N~Ls~l~~l~~L~~L~sL~~L~Ls~NpLt~~~~~r~~~~~~l~~L~~L~LdgN~Is~ 324 (937)
|.|+.++ .+..+++|+.|+|++|.|..+| ..+..+++|+.|+|++|++...+ +..++.|+.|+|++|++.+
T Consensus 288 N~l~~l~~~~~~l~~L~~L~Ls~N~l~~i~--~~~~~l~~L~~L~L~~N~l~~~~------~~~~~~L~~L~l~~N~~~~ 359 (597)
T 3oja_B 288 NRLVALNLYGQPIPTLKVLDLSHNHLLHVE--RNQPQFDRLENLYLDHNSIVTLK------LSTHHTLKNLTLSHNDWDC 359 (597)
T ss_dssp SCCCEEECSSSCCTTCCEEECCSSCCCCCG--GGHHHHTTCSEEECCSSCCCCCC------CCTTCCCSEEECCSSCEEH
T ss_pred CCCCCCCcccccCCCCcEEECCCCCCCccC--cccccCCCCCEEECCCCCCCCcC------hhhcCCCCEEEeeCCCCCC
Confidence 9999987 5677999999999999999987 45788999999999999998654 4567899999999999998
Q ss_pred hhH
Q 002315 325 REL 327 (937)
Q Consensus 325 ~e~ 327 (937)
...
T Consensus 360 ~~~ 362 (597)
T 3oja_B 360 NSL 362 (597)
T ss_dssp HHH
T ss_pred hhH
Confidence 753
No 4
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.91 E-value=6.1e-24 Score=243.78 Aligned_cols=278 Identities=15% Similarity=0.149 Sum_probs=183.3
Q ss_pred hhcCCcEEEecCCCccchH-hhhhhcccchhccCCCCCcccccccccCCCCCcchHHHHHhcCCCCCcEEEccCCCCCCC
Q 002315 24 LIEGSIVLKLNPAGLHYVQ-SRLEALRELERLLAGAPLDYLRAYVSDLGDHRALEQLRRILKLLTSLKVVSALPPPARDP 102 (937)
Q Consensus 24 lL~~l~~L~L~~~~L~~Lp-~~L~~L~~Le~L~~g~~L~~L~l~vLdLs~n~~le~Lp~~L~~L~~Lk~LdLs~N~Is~~ 102 (937)
+...++.|++..+.+..++ ..+..+++|+. +++++|......|..|.++++|++|+|++|.+...
T Consensus 30 ~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~--------------L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~ 95 (477)
T 2id5_A 30 IPTETRLLDLGKNRIKTLNQDEFASFPHLEE--------------LELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLI 95 (477)
T ss_dssp CCTTCSEEECCSSCCCEECTTTTTTCTTCCE--------------EECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSC
T ss_pred CCCCCcEEECCCCccceECHhHccCCCCCCE--------------EECCCCccCEeChhhhhCCccCCEEECCCCcCCcc
Confidence 3455677777777776653 34455544443 34444444443455666666666666666666655
Q ss_pred CCCCCCCCCCCcEEEeeCCCCCccchhhHhhhhhhhhhhhccCCCcccchhcccchhcccCCCCCCCccEEEccCCcCcc
Q 002315 103 TPLSLLPFCRLKVLELRGCDLSTSAAKGLLELRHTLEKIICHNSTNALRHVFASRIVEIKDSPQWNRLSFVSCSCNRLVI 182 (937)
Q Consensus 103 iP~sLs~L~~L~~LdLS~N~Ls~~lp~~L~~L~~Ll~LlL~~N~L~~L~~l~~~~i~~l~~l~~l~~L~~L~Ls~N~Ls~ 182 (937)
.+..|..+++|++|+|++|.+.+..+..|..+++|..+.+.+|.+..+.... +..+++|+.|++++|.++.
T Consensus 96 ~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~---------~~~l~~L~~L~l~~n~l~~ 166 (477)
T 2id5_A 96 PLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRA---------FSGLNSLEQLTLEKCNLTS 166 (477)
T ss_dssp CTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTS---------STTCTTCCEEEEESCCCSS
T ss_pred CcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhh---------ccCCCCCCEEECCCCcCcc
Confidence 5555666666666666666666666666666666666666666554433211 1234455555555555554
Q ss_pred chh-hcCCCCCCcEEECCCCCCCCCc--CcCC------------------------CCCCCEEECCCCCCCCccc-cccc
Q 002315 183 MDE-SLQLLPAVETLDLSRNKFAKVD--NLRK------------------------CVNLKHLDLGFNNLRSIAA-FSEV 234 (937)
Q Consensus 183 LP~-sL~~L~~L~~LdLs~N~L~~l~--~L~~------------------------L~~L~~LdLS~N~Lt~L~~-l~~~ 234 (937)
+|. .+..+++|+.|+|++|.+..++ .|.. ..+|+.|+|++|.|+.++. .+..
T Consensus 167 ~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~ 246 (477)
T 2id5_A 167 IPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRH 246 (477)
T ss_dssp CCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTT
T ss_pred cChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCcccccCHHHhcC
Confidence 443 3555555555555555554432 2333 3366677777777777764 3456
Q ss_pred ccccceecccCccccccc--cCCCCCCCCEEEccCCCCCCCchhhhhcCCCCCCEEEecCCCCCCCcchhhhHhhhcCCC
Q 002315 235 SCHIVKLVLRNNALTTLR--GIENLKSLEGLDISYNIISTFSELEFLASLPYLLNLWLEGNPLCCSRWYRAQVFSYFAHP 312 (937)
Q Consensus 235 l~sL~~L~Ls~N~Lt~Lp--~L~~L~sL~~LdLS~N~Ls~l~~l~~L~~L~sL~~L~Ls~NpLt~~~~~r~~~~~~l~~L 312 (937)
+++|+.|+|++|.|+.++ .+..+++|+.|+|++|.|..+++ ..+..+++|+.|+|++|.++..+ ...|..++.|
T Consensus 247 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~L~~N~l~~~~---~~~~~~l~~L 322 (477)
T 2id5_A 247 LVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEP-YAFRGLNYLRVLNVSGNQLTTLE---ESVFHSVGNL 322 (477)
T ss_dssp CTTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECT-TTBTTCTTCCEEECCSSCCSCCC---GGGBSCGGGC
T ss_pred ccccCeeECCCCcCCccChhhccccccCCEEECCCCccceECH-HHhcCcccCCEEECCCCcCceeC---HhHcCCCccc
Confidence 688999999999998875 58889999999999999988754 67889999999999999998654 3456678899
Q ss_pred ceeccCCccCChhhHH
Q 002315 313 AKLKVDGKEISTRELW 328 (937)
Q Consensus 313 ~~L~LdgN~Is~~e~~ 328 (937)
+.++|++|++.|....
T Consensus 323 ~~L~l~~N~l~c~c~~ 338 (477)
T 2id5_A 323 ETLILDSNPLACDCRL 338 (477)
T ss_dssp CEEECCSSCEECSGGG
T ss_pred CEEEccCCCccCccch
Confidence 9999999999987644
No 5
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.91 E-value=6.3e-23 Score=225.16 Aligned_cols=275 Identities=17% Similarity=0.234 Sum_probs=163.9
Q ss_pred hcCCcEEEecCCCccchHhhhhhcccchhccCCC-CCcc-------cccccccCCCCCcchHHHHHhcCCCCCcEEEccC
Q 002315 25 IEGSIVLKLNPAGLHYVQSRLEALRELERLLAGA-PLDY-------LRAYVSDLGDHRALEQLRRILKLLTSLKVVSALP 96 (937)
Q Consensus 25 L~~l~~L~L~~~~L~~Lp~~L~~L~~Le~L~~g~-~L~~-------L~l~vLdLs~n~~le~Lp~~L~~L~~Lk~LdLs~ 96 (937)
+..++.|.+..+.+..++. +..+++|+.|.... .+.. -.+..+++++|... .++ .+..+++|++|+|++
T Consensus 43 l~~L~~L~l~~~~i~~~~~-~~~~~~L~~L~l~~n~i~~~~~~~~l~~L~~L~L~~n~i~-~~~-~~~~l~~L~~L~l~~ 119 (347)
T 4fmz_A 43 LESITKLVVAGEKVASIQG-IEYLTNLEYLNLNGNQITDISPLSNLVKLTNLYIGTNKIT-DIS-ALQNLTNLRELYLNE 119 (347)
T ss_dssp HTTCSEEECCSSCCCCCTT-GGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCC-CCG-GGTTCTTCSEEECTT
T ss_pred cccccEEEEeCCccccchh-hhhcCCccEEEccCCccccchhhhcCCcCCEEEccCCccc-Cch-HHcCCCcCCEEECcC
Confidence 5667889998888888764 66666666655422 1111 12345677776533 344 588899999999999
Q ss_pred CCCCCCCCCCCCCCCCCcEEEeeCCCCCccchhhHhhhhhhhhhhhccCCCcccchhcccchhcccCCCCCCCccEEEcc
Q 002315 97 PPARDPTPLSLLPFCRLKVLELRGCDLSTSAAKGLLELRHTLEKIICHNSTNALRHVFASRIVEIKDSPQWNRLSFVSCS 176 (937)
Q Consensus 97 N~Is~~iP~sLs~L~~L~~LdLS~N~Ls~~lp~~L~~L~~Ll~LlL~~N~L~~L~~l~~~~i~~l~~l~~l~~L~~L~Ls 176 (937)
|.+....+ +..+++|+.|++++|.....++ .+..++++..+.+.+|.+..+..+ ..+++|+.|+++
T Consensus 120 n~i~~~~~--~~~l~~L~~L~l~~n~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~~-----------~~l~~L~~L~l~ 185 (347)
T 4fmz_A 120 DNISDISP--LANLTKMYSLNLGANHNLSDLS-PLSNMTGLNYLTVTESKVKDVTPI-----------ANLTDLYSLSLN 185 (347)
T ss_dssp SCCCCCGG--GTTCTTCCEEECTTCTTCCCCG-GGTTCTTCCEEECCSSCCCCCGGG-----------GGCTTCSEEECT
T ss_pred CcccCchh--hccCCceeEEECCCCCCccccc-chhhCCCCcEEEecCCCcCCchhh-----------ccCCCCCEEEcc
Confidence 99886533 8888999999999986655444 477888888888888776555431 234456666666
Q ss_pred CCcCccchhhcCCCCCCcEEECCCCCCCCCcCcCCCCCCCEEECCCCCCCCcccccccccccceecccCccccccccCCC
Q 002315 177 CNRLVIMDESLQLLPAVETLDLSRNKFAKVDNLRKCVNLKHLDLGFNNLRSIAAFSEVSCHIVKLVLRNNALTTLRGIEN 256 (937)
Q Consensus 177 ~N~Ls~LP~sL~~L~~L~~LdLs~N~L~~l~~L~~L~~L~~LdLS~N~Lt~L~~l~~~l~sL~~L~Ls~N~Lt~Lp~L~~ 256 (937)
+|.+..++. +..+++|+.|++++|.+..++.+..+++|+.|+|++|.++.++. ...+++|+.|+|++|.++.++.+..
T Consensus 186 ~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~ 263 (347)
T 4fmz_A 186 YNQIEDISP-LASLTSLHYFTAYVNQITDITPVANMTRLNSLKIGNNKITDLSP-LANLSQLTWLEIGTNQISDINAVKD 263 (347)
T ss_dssp TSCCCCCGG-GGGCTTCCEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCGGGTT
T ss_pred CCccccccc-ccCCCccceeecccCCCCCCchhhcCCcCCEEEccCCccCCCcc-hhcCCCCCEEECCCCccCCChhHhc
Confidence 666555543 45555555555555555555445555555555555555555544 3334555555555555555555555
Q ss_pred CCCCCEEEccCCCCCCCchhhhhcCCCCCCEEEecCCCCCCCcchhhhHhhhcCCCceeccCCccCCh
Q 002315 257 LKSLEGLDISYNIISTFSELEFLASLPYLLNLWLEGNPLCCSRWYRAQVFSYFAHPAKLKVDGKEIST 324 (937)
Q Consensus 257 L~sL~~LdLS~N~Ls~l~~l~~L~~L~sL~~L~Ls~NpLt~~~~~r~~~~~~l~~L~~L~LdgN~Is~ 324 (937)
+++|+.|+|++|.|+.++ .+..+++|+.|+|++|++.... ...+..++.|+.++|++|+++.
T Consensus 264 l~~L~~L~l~~n~l~~~~---~~~~l~~L~~L~L~~n~l~~~~---~~~l~~l~~L~~L~L~~n~l~~ 325 (347)
T 4fmz_A 264 LTKLKMLNVGSNQISDIS---VLNNLSQLNSLFLNNNQLGNED---MEVIGGLTNLTTLFLSQNHITD 325 (347)
T ss_dssp CTTCCEEECCSSCCCCCG---GGGGCTTCSEEECCSSCCCGGG---HHHHHTCTTCSEEECCSSSCCC
T ss_pred CCCcCEEEccCCccCCCh---hhcCCCCCCEEECcCCcCCCcC---hhHhhccccCCEEEccCCcccc
Confidence 555555555555555542 2444555555555555554221 2334445555555555555543
No 6
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.90 E-value=1.6e-23 Score=239.72 Aligned_cols=229 Identities=16% Similarity=0.173 Sum_probs=164.9
Q ss_pred CCCcEEEccCCCCCCCCCCCCCCCCCCcEEEeeCCCCCccchhhHhhhhhhhhhhhccCCCcccchhcccchhcccCCCC
Q 002315 87 TSLKVVSALPPPARDPTPLSLLPFCRLKVLELRGCDLSTSAAKGLLELRHTLEKIICHNSTNALRHVFASRIVEIKDSPQ 166 (937)
Q Consensus 87 ~~Lk~LdLs~N~Is~~iP~sLs~L~~L~~LdLS~N~Ls~~lp~~L~~L~~Ll~LlL~~N~L~~L~~l~~~~i~~l~~l~~ 166 (937)
++|+.|+|++|.|....|..|..+++|++|+|++|.|++..+..|..+++|..+.+.+|.+..++... +..
T Consensus 75 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~---------~~~ 145 (452)
T 3zyi_A 75 SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGA---------FEY 145 (452)
T ss_dssp TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTT---------SSS
T ss_pred CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccChhh---------hcc
Confidence 57777777777777777777777777888888777777776677777777777777777766554322 234
Q ss_pred CCCccEEEccCCcCccchh-hcCCCCCCcEEECCC-CCCCCCc--CcCCCCCCCEEECCCCCCCCcccccccccccceec
Q 002315 167 WNRLSFVSCSCNRLVIMDE-SLQLLPAVETLDLSR-NKFAKVD--NLRKCVNLKHLDLGFNNLRSIAAFSEVSCHIVKLV 242 (937)
Q Consensus 167 l~~L~~L~Ls~N~Ls~LP~-sL~~L~~L~~LdLs~-N~L~~l~--~L~~L~~L~~LdLS~N~Lt~L~~l~~~l~sL~~L~ 242 (937)
+++|++|+|++|.|..+|. .|..+++|+.|+|++ |.+..++ .|..+++|+.|+|++|.|+.++.+ ..+++|+.|+
T Consensus 146 l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~l~~L~~L~ 224 (452)
T 3zyi_A 146 LSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDMPNL-TPLVGLEELE 224 (452)
T ss_dssp CTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSCCCC-TTCTTCCEEE
T ss_pred cCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCcccccccc-cccccccEEE
Confidence 5678888888888877665 677778888888877 4555553 577778888888888888777643 3457788888
Q ss_pred ccCccccccc--cCCCCCCCCEEEccCCCCCCCchhhhhcCCCCCCEEEecCCCCCCCcchhhhHhhhcCCCceeccCCc
Q 002315 243 LRNNALTTLR--GIENLKSLEGLDISYNIISTFSELEFLASLPYLLNLWLEGNPLCCSRWYRAQVFSYFAHPAKLKVDGK 320 (937)
Q Consensus 243 Ls~N~Lt~Lp--~L~~L~sL~~LdLS~N~Ls~l~~l~~L~~L~sL~~L~Ls~NpLt~~~~~r~~~~~~l~~L~~L~LdgN 320 (937)
|++|.|+.++ .+..+++|+.|+|++|.|+.++. ..+..+++|+.|+|++|.++..+ ...+..++.|+.++|++|
T Consensus 225 Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~L~~N~l~~~~---~~~~~~l~~L~~L~L~~N 300 (452)
T 3zyi_A 225 MSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIER-NAFDGLASLVELNLAHNNLSSLP---HDLFTPLRYLVELHLHHN 300 (452)
T ss_dssp CTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECT-TTTTTCTTCCEEECCSSCCSCCC---TTSSTTCTTCCEEECCSS
T ss_pred CcCCcCcccCcccccCccCCCEEEeCCCcCceECH-HHhcCCCCCCEEECCCCcCCccC---hHHhccccCCCEEEccCC
Confidence 8888887762 67777888888888888877654 55677788888888888777544 234556777888888888
Q ss_pred cCChhhHHH
Q 002315 321 EISTRELWE 329 (937)
Q Consensus 321 ~Is~~e~~~ 329 (937)
++.|.....
T Consensus 301 p~~CdC~~~ 309 (452)
T 3zyi_A 301 PWNCDCDIL 309 (452)
T ss_dssp CEECSTTTH
T ss_pred CcCCCCCch
Confidence 877766433
No 7
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.90 E-value=1.7e-23 Score=238.74 Aligned_cols=239 Identities=16% Similarity=0.185 Sum_probs=174.0
Q ss_pred chHHHHHhcCCCCCcEEEccCCCCCCCCCCCCCCCCCCcEEEeeCCCCCccchhhHhhhhhhhhhhhccCCCcccchhcc
Q 002315 76 LEQLRRILKLLTSLKVVSALPPPARDPTPLSLLPFCRLKVLELRGCDLSTSAAKGLLELRHTLEKIICHNSTNALRHVFA 155 (937)
Q Consensus 76 le~Lp~~L~~L~~Lk~LdLs~N~Is~~iP~sLs~L~~L~~LdLS~N~Ls~~lp~~L~~L~~Ll~LlL~~N~L~~L~~l~~ 155 (937)
+..+|..+ .++|+.|+|++|.|....+..|..+++|++|+|++|.|+...+..|..+++|.+|.+.+|.+..++...
T Consensus 55 l~~iP~~~--~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~- 131 (440)
T 3zyj_A 55 LREVPDGI--STNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGA- 131 (440)
T ss_dssp CSSCCSCC--CTTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCCTTT-
T ss_pred cCcCCCCC--CCCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeCHhH-
Confidence 44455433 257778888888887777777888888888888888887777777777888888888877766555422
Q ss_pred cchhcccCCCCCCCccEEEccCCcCccchh-hcCCCCCCcEEECCC-CCCCCCc--CcCCCCCCCEEECCCCCCCCcccc
Q 002315 156 SRIVEIKDSPQWNRLSFVSCSCNRLVIMDE-SLQLLPAVETLDLSR-NKFAKVD--NLRKCVNLKHLDLGFNNLRSIAAF 231 (937)
Q Consensus 156 ~~i~~l~~l~~l~~L~~L~Ls~N~Ls~LP~-sL~~L~~L~~LdLs~-N~L~~l~--~L~~L~~L~~LdLS~N~Lt~L~~l 231 (937)
+..+++|+.|+|++|.|..+|. .|..+++|+.|+|++ |.+..++ .|..+++|+.|+|++|.|+.++.+
T Consensus 132 --------~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~ 203 (440)
T 3zyj_A 132 --------FVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREIPNL 203 (440)
T ss_dssp --------SCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSSCCCC
T ss_pred --------hhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCcccccc
Confidence 2356678888888888887665 677788888888887 4455543 577788888888888888877653
Q ss_pred cccccccceecccCccccccc--cCCCCCCCCEEEccCCCCCCCchhhhhcCCCCCCEEEecCCCCCCCcchhhhHhhhc
Q 002315 232 SEVSCHIVKLVLRNNALTTLR--GIENLKSLEGLDISYNIISTFSELEFLASLPYLLNLWLEGNPLCCSRWYRAQVFSYF 309 (937)
Q Consensus 232 ~~~l~sL~~L~Ls~N~Lt~Lp--~L~~L~sL~~LdLS~N~Ls~l~~l~~L~~L~sL~~L~Ls~NpLt~~~~~r~~~~~~l 309 (937)
..+++|+.|+|++|.|+.++ .+..+++|+.|+|++|.|+.++. ..+..+++|+.|+|++|.++..+ ...+..+
T Consensus 204 -~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~L~~N~l~~~~---~~~~~~l 278 (440)
T 3zyj_A 204 -TPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIER-NAFDNLQSLVEINLAHNNLTLLP---HDLFTPL 278 (440)
T ss_dssp -TTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECT-TSSTTCTTCCEEECTTSCCCCCC---TTTTSSC
T ss_pred -CCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEECh-hhhcCCCCCCEEECCCCCCCccC---hhHhccc
Confidence 34577888888888887763 67778888888888888887654 56777888888888888887554 3445667
Q ss_pred CCCceeccCCccCChhhHHHH
Q 002315 310 AHPAKLKVDGKEISTRELWER 330 (937)
Q Consensus 310 ~~L~~L~LdgN~Is~~e~~~~ 330 (937)
+.|+.++|++|++.|......
T Consensus 279 ~~L~~L~L~~Np~~CdC~l~~ 299 (440)
T 3zyj_A 279 HHLERIHLHHNPWNCNCDILW 299 (440)
T ss_dssp TTCCEEECCSSCEECSSTTHH
T ss_pred cCCCEEEcCCCCccCCCCchH
Confidence 778888888888877664433
No 8
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.90 E-value=3.7e-23 Score=237.31 Aligned_cols=286 Identities=20% Similarity=0.233 Sum_probs=218.7
Q ss_pred hcCCcEEEecCCCccch-HhhhhhcccchhccCCC-CCc---------ccccccccCCCCCcchHHHHHhcCCCCCcEEE
Q 002315 25 IEGSIVLKLNPAGLHYV-QSRLEALRELERLLAGA-PLD---------YLRAYVSDLGDHRALEQLRRILKLLTSLKVVS 93 (937)
Q Consensus 25 L~~l~~L~L~~~~L~~L-p~~L~~L~~Le~L~~g~-~L~---------~L~l~vLdLs~n~~le~Lp~~L~~L~~Lk~Ld 93 (937)
+..++.|++..+.+..+ |..+..+++|+.|.... .+. .-.+..+++++|......+..|..+++|+.|+
T Consensus 55 l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ 134 (477)
T 2id5_A 55 FPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLE 134 (477)
T ss_dssp CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEE
T ss_pred CCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEE
Confidence 56788999999988876 66677777776665421 111 11234567777766655566777788888888
Q ss_pred ccCCCCCCCCCCCCCCCCCCcEEEeeCCCCCccchhhHhhhhhhhhhhhccCCCcccchhcccchhcccCCCCCCCccEE
Q 002315 94 ALPPPARDPTPLSLLPFCRLKVLELRGCDLSTSAAKGLLELRHTLEKIICHNSTNALRHVFASRIVEIKDSPQWNRLSFV 173 (937)
Q Consensus 94 Ls~N~Is~~iP~sLs~L~~L~~LdLS~N~Ls~~lp~~L~~L~~Ll~LlL~~N~L~~L~~l~~~~i~~l~~l~~l~~L~~L 173 (937)
|++|.+....|..|..+++|+.|+|++|.+++..+..+..+++|..+.+.+|.+..+.... +..+++|+.|
T Consensus 135 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~---------~~~l~~L~~L 205 (477)
T 2id5_A 135 VGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYS---------FKRLYRLKVL 205 (477)
T ss_dssp ECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCEECTTC---------SCSCTTCCEE
T ss_pred CCCCccceeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCcEeChhh---------cccCccccee
Confidence 8888887777777888888888888888887766667777777777777777766554322 3466789999
Q ss_pred EccCCcCc-cchhhcCCCCCCcEEECCCCCCCCCc--CcCCCCCCCEEECCCCCCCCccc-ccccccccceecccCcccc
Q 002315 174 SCSCNRLV-IMDESLQLLPAVETLDLSRNKFAKVD--NLRKCVNLKHLDLGFNNLRSIAA-FSEVSCHIVKLVLRNNALT 249 (937)
Q Consensus 174 ~Ls~N~Ls-~LP~sL~~L~~L~~LdLs~N~L~~l~--~L~~L~~L~~LdLS~N~Lt~L~~-l~~~l~sL~~L~Ls~N~Lt 249 (937)
++++|.+. .+|..+....+|+.|+|++|.|+.++ .+..+++|+.|+|++|.|+.++. .+..+++|+.|+|++|+|+
T Consensus 206 ~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~ 285 (477)
T 2id5_A 206 EISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLA 285 (477)
T ss_dssp EEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCS
T ss_pred eCCCCccccccCcccccCccccEEECcCCcccccCHHHhcCccccCeeECCCCcCCccChhhccccccCCEEECCCCccc
Confidence 99987654 77776667779999999999999987 68899999999999999998775 4556789999999999999
Q ss_pred ccc--cCCCCCCCCEEEccCCCCCCCchhhhhcCCCCCCEEEecCCCCCCCcchhhhHhhhcCCCceeccCCccCCh
Q 002315 250 TLR--GIENLKSLEGLDISYNIISTFSELEFLASLPYLLNLWLEGNPLCCSRWYRAQVFSYFAHPAKLKVDGKEIST 324 (937)
Q Consensus 250 ~Lp--~L~~L~sL~~LdLS~N~Ls~l~~l~~L~~L~sL~~L~Ls~NpLt~~~~~r~~~~~~l~~L~~L~LdgN~Is~ 324 (937)
.++ .+..+++|+.|+|++|.|+.++. ..+..+++|+.|+|++|++.|.+... ++ +.....+.+.++.+.|
T Consensus 286 ~~~~~~~~~l~~L~~L~L~~N~l~~~~~-~~~~~l~~L~~L~l~~N~l~c~c~~~--~~--~~~~~~~~~~~~~~~C 357 (477)
T 2id5_A 286 VVEPYAFRGLNYLRVLNVSGNQLTTLEE-SVFHSVGNLETLILDSNPLACDCRLL--WV--FRRRWRLNFNRQQPTC 357 (477)
T ss_dssp EECTTTBTTCTTCCEEECCSSCCSCCCG-GGBSCGGGCCEEECCSSCEECSGGGH--HH--HTTTTSSCCTTCCCBE
T ss_pred eECHHHhcCcccCCEEECCCCcCceeCH-hHcCCCcccCEEEccCCCccCccchH--hH--HhhhhccccCccCcee
Confidence 973 78999999999999999999875 66789999999999999999998542 22 2223334455555554
No 9
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.90 E-value=2.8e-22 Score=219.94 Aligned_cols=233 Identities=18% Similarity=0.207 Sum_probs=139.1
Q ss_pred ccccCCCCCcchHHHHHhcCCCCCcEEEccCCCCCCCCCCCCCCCCCCcEEEeeCCCCCccchhhHhhhhhhhhhhhccC
Q 002315 66 YVSDLGDHRALEQLRRILKLLTSLKVVSALPPPARDPTPLSLLPFCRLKVLELRGCDLSTSAAKGLLELRHTLEKIICHN 145 (937)
Q Consensus 66 ~vLdLs~n~~le~Lp~~L~~L~~Lk~LdLs~N~Is~~iP~sLs~L~~L~~LdLS~N~Ls~~lp~~L~~L~~Ll~LlL~~N 145 (937)
..+++++|... .++. +..+++|++|+|++|.++.. ..|..+++|++|+|++|.+....+ +..++++..+.+.+|
T Consensus 69 ~~L~l~~n~i~-~~~~-~~~l~~L~~L~L~~n~i~~~--~~~~~l~~L~~L~l~~n~i~~~~~--~~~l~~L~~L~l~~n 142 (347)
T 4fmz_A 69 EYLNLNGNQIT-DISP-LSNLVKLTNLYIGTNKITDI--SALQNLTNLRELYLNEDNISDISP--LANLTKMYSLNLGAN 142 (347)
T ss_dssp CEEECCSSCCC-CCGG-GTTCTTCCEEECCSSCCCCC--GGGTTCTTCSEEECTTSCCCCCGG--GTTCTTCCEEECTTC
T ss_pred cEEEccCCccc-cchh-hhcCCcCCEEEccCCcccCc--hHHcCCCcCCEEECcCCcccCchh--hccCCceeEEECCCC
Confidence 34555555332 2333 66666666666666666543 346666666666666666665322 556666666666655
Q ss_pred C-CcccchhcccchhcccCCCCCCCccEEEccCCcCccchhhcCCCCCCcEEECCCCCCCCCcCcCCCCCCCEEECCCCC
Q 002315 146 S-TNALRHVFASRIVEIKDSPQWNRLSFVSCSCNRLVIMDESLQLLPAVETLDLSRNKFAKVDNLRKCVNLKHLDLGFNN 224 (937)
Q Consensus 146 ~-L~~L~~l~~~~i~~l~~l~~l~~L~~L~Ls~N~Ls~LP~sL~~L~~L~~LdLs~N~L~~l~~L~~L~~L~~LdLS~N~ 224 (937)
. +..++ .+..+++|++|++++|.+..++. +..+++|+.|++++|.+..++.+..+++|+.|++++|.
T Consensus 143 ~~~~~~~-----------~~~~l~~L~~L~l~~~~~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~ 210 (347)
T 4fmz_A 143 HNLSDLS-----------PLSNMTGLNYLTVTESKVKDVTP-IANLTDLYSLSLNYNQIEDISPLASLTSLHYFTAYVNQ 210 (347)
T ss_dssp TTCCCCG-----------GGTTCTTCCEEECCSSCCCCCGG-GGGCTTCSEEECTTSCCCCCGGGGGCTTCCEEECCSSC
T ss_pred CCccccc-----------chhhCCCCcEEEecCCCcCCchh-hccCCCCCEEEccCCcccccccccCCCccceeecccCC
Confidence 2 11111 12345566666666666665544 55666666666666666666556666666666666666
Q ss_pred CCCcccccccccccceecccCccccccccCCCCCCCCEEEccCCCCCCCchhhhhcCCCCCCEEEecCCCCCCCcchhhh
Q 002315 225 LRSIAAFSEVSCHIVKLVLRNNALTTLRGIENLKSLEGLDISYNIISTFSELEFLASLPYLLNLWLEGNPLCCSRWYRAQ 304 (937)
Q Consensus 225 Lt~L~~l~~~l~sL~~L~Ls~N~Lt~Lp~L~~L~sL~~LdLS~N~Ls~l~~l~~L~~L~sL~~L~Ls~NpLt~~~~~r~~ 304 (937)
++.++. ...+++|+.|+|++|.++.++.+..+++|+.|+|++|.++.++ .+..+++|+.|++++|.+...+
T Consensus 211 l~~~~~-~~~~~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~---~~~~l~~L~~L~l~~n~l~~~~----- 281 (347)
T 4fmz_A 211 ITDITP-VANMTRLNSLKIGNNKITDLSPLANLSQLTWLEIGTNQISDIN---AVKDLTKLKMLNVGSNQISDIS----- 281 (347)
T ss_dssp CCCCGG-GGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCCG---GGTTCTTCCEEECCSSCCCCCG-----
T ss_pred CCCCch-hhcCCcCCEEEccCCccCCCcchhcCCCCCEEECCCCccCCCh---hHhcCCCcCEEEccCCccCCCh-----
Confidence 666554 3344666666666666666655666666666666666666653 3556666666666666665432
Q ss_pred HhhhcCCCceeccCCccCChh
Q 002315 305 VFSYFAHPAKLKVDGKEISTR 325 (937)
Q Consensus 305 ~~~~l~~L~~L~LdgN~Is~~ 325 (937)
.+..++.|+.|+|++|+++..
T Consensus 282 ~~~~l~~L~~L~L~~n~l~~~ 302 (347)
T 4fmz_A 282 VLNNLSQLNSLFLNNNQLGNE 302 (347)
T ss_dssp GGGGCTTCSEEECCSSCCCGG
T ss_pred hhcCCCCCCEEECcCCcCCCc
Confidence 244566666666666666544
No 10
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.89 E-value=8.6e-23 Score=240.65 Aligned_cols=289 Identities=18% Similarity=0.140 Sum_probs=221.2
Q ss_pred CCcEEEecCCCccchHhh-hhhcccchhccCCC-CCcc--------cccccccCCCCCcchHHHHHhcCCCCCcEEEccC
Q 002315 27 GSIVLKLNPAGLHYVQSR-LEALRELERLLAGA-PLDY--------LRAYVSDLGDHRALEQLRRILKLLTSLKVVSALP 96 (937)
Q Consensus 27 ~l~~L~L~~~~L~~Lp~~-L~~L~~Le~L~~g~-~L~~--------L~l~vLdLs~n~~le~Lp~~L~~L~~Lk~LdLs~ 96 (937)
.++.|++..+.+..++.. +..+++|+.+.... .+.. -.+..+++++|......|..+..+++|+.|+|++
T Consensus 255 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 334 (606)
T 3t6q_A 255 SVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLSELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKG 334 (606)
T ss_dssp EEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTSCCSCCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCS
T ss_pred ceeEEEeecCccCccCHHHhccccCCCEEeccCCccCCCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCC
Confidence 456677777766665543 45555554443311 1111 1234566777776666677788899999999998
Q ss_pred CCCCCCCCC-CCCCCCCCcEEEeeCCCCCccc--hhhHhhhhhhhhhhhccCCCcccchhcccchhcccCCCCCCCccEE
Q 002315 97 PPARDPTPL-SLLPFCRLKVLELRGCDLSTSA--AKGLLELRHTLEKIICHNSTNALRHVFASRIVEIKDSPQWNRLSFV 173 (937)
Q Consensus 97 N~Is~~iP~-sLs~L~~L~~LdLS~N~Ls~~l--p~~L~~L~~Ll~LlL~~N~L~~L~~l~~~~i~~l~~l~~l~~L~~L 173 (937)
|.+.+.+|. .|..+++|++|+|++|.+++.. +..+..+++|.++.+.+|.+..+... .+..+++|+.|
T Consensus 335 n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~---------~~~~l~~L~~L 405 (606)
T 3t6q_A 335 NTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTE---------AFKECPQLELL 405 (606)
T ss_dssp CSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTT---------TTTTCTTCSEE
T ss_pred CCcccccchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHH---------HhcCCccCCeE
Confidence 888765554 4888999999999999998765 67788888888888888876554321 23467789999
Q ss_pred EccCCcCccc-hh-hcCCCCCCcEEECCCCCCCCCc--CcCCCCCCCEEECCCCCCCCc--c--cccccccccceecccC
Q 002315 174 SCSCNRLVIM-DE-SLQLLPAVETLDLSRNKFAKVD--NLRKCVNLKHLDLGFNNLRSI--A--AFSEVSCHIVKLVLRN 245 (937)
Q Consensus 174 ~Ls~N~Ls~L-P~-sL~~L~~L~~LdLs~N~L~~l~--~L~~L~~L~~LdLS~N~Lt~L--~--~l~~~l~sL~~L~Ls~ 245 (937)
++++|.+... |. .+..+++|+.|++++|.+.... .+..+++|+.|+|++|.+++. + .....+++|+.|+|++
T Consensus 406 ~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~ 485 (606)
T 3t6q_A 406 DLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSF 485 (606)
T ss_dssp ECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTT
T ss_pred ECCCCcCCCcccchhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCC
Confidence 9999999854 33 4889999999999999998753 688899999999999999862 2 3455678999999999
Q ss_pred ccccccc--cCCCCCCCCEEEccCCCCCCCchhhhhcCCCCCCEEEecCCCCCCCcchhhhHhhhcCCCceeccCCccCC
Q 002315 246 NALTTLR--GIENLKSLEGLDISYNIISTFSELEFLASLPYLLNLWLEGNPLCCSRWYRAQVFSYFAHPAKLKVDGKEIS 323 (937)
Q Consensus 246 N~Lt~Lp--~L~~L~sL~~LdLS~N~Ls~l~~l~~L~~L~sL~~L~Ls~NpLt~~~~~r~~~~~~l~~L~~L~LdgN~Is 323 (937)
|.++.++ .+..+++|+.|+|++|+++.+++ ..+..++.| .|+|++|.++..+ +..+..++.|+.++|++|++.
T Consensus 486 n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-~~l~~l~~L-~L~L~~N~l~~~~---~~~~~~l~~L~~L~l~~N~~~ 560 (606)
T 3t6q_A 486 CDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSI-EALSHLKGI-YLNLASNHISIIL---PSLLPILSQQRTINLRQNPLD 560 (606)
T ss_dssp SCCCEECTTTTTTCTTCCEEECCSSCCCGGGG-GGGTTCCSC-EEECCSSCCCCCC---GGGHHHHHTSSEEECTTCCEE
T ss_pred CccCccChhhhccccCCCEEECCCCccCcCCh-hHhCccccc-EEECcCCcccccC---HhhcccCCCCCEEeCCCCCcc
Confidence 9999873 78999999999999999998764 778999999 9999999998654 355677889999999999999
Q ss_pred hhhHHH
Q 002315 324 TRELWE 329 (937)
Q Consensus 324 ~~e~~~ 329 (937)
|.....
T Consensus 561 c~c~~~ 566 (606)
T 3t6q_A 561 CTCSNI 566 (606)
T ss_dssp CSGGGH
T ss_pred ccCCcH
Confidence 876543
No 11
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.89 E-value=5.1e-23 Score=234.73 Aligned_cols=226 Identities=19% Similarity=0.233 Sum_probs=199.4
Q ss_pred ccccCCCCCcchHHHHHhcCCCCCcEEEccCCCCCCCCCCCCCCCCCCcEEEeeCCCCCccchhhHhhhhhhhhhhhccC
Q 002315 66 YVSDLGDHRALEQLRRILKLLTSLKVVSALPPPARDPTPLSLLPFCRLKVLELRGCDLSTSAAKGLLELRHTLEKIICHN 145 (937)
Q Consensus 66 ~vLdLs~n~~le~Lp~~L~~L~~Lk~LdLs~N~Is~~iP~sLs~L~~L~~LdLS~N~Ls~~lp~~L~~L~~Ll~LlL~~N 145 (937)
..++|++|......+..|.++++|+.|+|++|.|....+..|..+++|++|+|++|.|+...+..|..+++|.++.+.+|
T Consensus 67 ~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N 146 (440)
T 3zyj_A 67 RLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNN 146 (440)
T ss_dssp SEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEECCSC
T ss_pred cEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeCHhHhhccccCceeeCCCC
Confidence 44677777765555678999999999999999999988899999999999999999999877778999999999999999
Q ss_pred CCcccchhcccchhcccCCCCCCCccEEEccC-CcCccchh-hcCCCCCCcEEECCCCCCCCCcCcCCCCCCCEEECCCC
Q 002315 146 STNALRHVFASRIVEIKDSPQWNRLSFVSCSC-NRLVIMDE-SLQLLPAVETLDLSRNKFAKVDNLRKCVNLKHLDLGFN 223 (937)
Q Consensus 146 ~L~~L~~l~~~~i~~l~~l~~l~~L~~L~Ls~-N~Ls~LP~-sL~~L~~L~~LdLs~N~L~~l~~L~~L~~L~~LdLS~N 223 (937)
.+..++... +..+++|+.|++++ |.+..++. .|..+++|++|+|++|.|+.++.+..+++|+.|+|++|
T Consensus 147 ~i~~~~~~~---------~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~Ls~N 217 (440)
T 3zyj_A 147 PIESIPSYA---------FNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREIPNLTPLIKLDELDLSGN 217 (440)
T ss_dssp CCCEECTTT---------TTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSSCCCCTTCSSCCEEECTTS
T ss_pred cccccCHHH---------hhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCccccccCCCcccCEEECCCC
Confidence 887766533 23678999999998 56777766 68999999999999999999999999999999999999
Q ss_pred CCCCcc-cccccccccceecccCccccccc--cCCCCCCCCEEEccCCCCCCCchhhhhcCCCCCCEEEecCCCCCCCcc
Q 002315 224 NLRSIA-AFSEVSCHIVKLVLRNNALTTLR--GIENLKSLEGLDISYNIISTFSELEFLASLPYLLNLWLEGNPLCCSRW 300 (937)
Q Consensus 224 ~Lt~L~-~l~~~l~sL~~L~Ls~N~Lt~Lp--~L~~L~sL~~LdLS~N~Ls~l~~l~~L~~L~sL~~L~Ls~NpLt~~~~ 300 (937)
.|+.++ ..+..+++|+.|+|++|+|+.++ .+..+++|+.|+|++|+|+.++. ..+..+++|+.|+|++||+.|+|.
T Consensus 218 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~-~~~~~l~~L~~L~L~~Np~~CdC~ 296 (440)
T 3zyj_A 218 HLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPH-DLFTPLHHLERIHLHHNPWNCNCD 296 (440)
T ss_dssp CCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCT-TTTSSCTTCCEEECCSSCEECSST
T ss_pred ccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccCh-hHhccccCCCEEEcCCCCccCCCC
Confidence 999875 45567799999999999999974 78999999999999999999875 667899999999999999999985
Q ss_pred h
Q 002315 301 Y 301 (937)
Q Consensus 301 ~ 301 (937)
.
T Consensus 297 l 297 (440)
T 3zyj_A 297 I 297 (440)
T ss_dssp T
T ss_pred c
Confidence 4
No 12
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.89 E-value=1.6e-23 Score=250.91 Aligned_cols=241 Identities=17% Similarity=0.188 Sum_probs=201.1
Q ss_pred CcchHHHHHhcCCCCCcEEEccCCCCCCC-----------------CCCCCC--CCCCCcEEEeeCCCCCccchhhHhhh
Q 002315 74 RALEQLRRILKLLTSLKVVSALPPPARDP-----------------TPLSLL--PFCRLKVLELRGCDLSTSAAKGLLEL 134 (937)
Q Consensus 74 ~~le~Lp~~L~~L~~Lk~LdLs~N~Is~~-----------------iP~sLs--~L~~L~~LdLS~N~Ls~~lp~~L~~L 134 (937)
...+ +|..++++++|++|+|++|.+++. +|..++ .+++|++|+|++|.+.+.+|..|..+
T Consensus 194 ~l~~-ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l 272 (636)
T 4eco_A 194 NITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKAL 272 (636)
T ss_dssp EEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTC
T ss_pred CCcc-CCHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcC
Confidence 4344 899999999999999999999985 899999 99999999999999999999999999
Q ss_pred hhhhhhhhccCC-Ccc--cchhcccchhcccCCCCCCCccEEEccCCcCccchh--hcCCCCCCcEEECCCCCCC-CCcC
Q 002315 135 RHTLEKIICHNS-TNA--LRHVFASRIVEIKDSPQWNRLSFVSCSCNRLVIMDE--SLQLLPAVETLDLSRNKFA-KVDN 208 (937)
Q Consensus 135 ~~Ll~LlL~~N~-L~~--L~~l~~~~i~~l~~l~~l~~L~~L~Ls~N~Ls~LP~--sL~~L~~L~~LdLs~N~L~-~l~~ 208 (937)
++|..+.+.+|. +.. ++..+ ..+..+..+++|++|++++|.++.+|. .+..+++|+.|+|++|.+. .++.
T Consensus 273 ~~L~~L~Ls~n~~l~~~~lp~~~----~~L~~~~~l~~L~~L~L~~n~l~~ip~~~~l~~l~~L~~L~L~~N~l~g~ip~ 348 (636)
T 4eco_A 273 PEMQLINVACNRGISGEQLKDDW----QALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLPA 348 (636)
T ss_dssp SSCCEEECTTCTTSCHHHHHHHH----HHHHHSGGGGTCCEEECCSSCCSSCCCHHHHTTCTTCCEEECCSCCCEEECCC
T ss_pred CCCCEEECcCCCCCccccchHHH----HhhhccccCCCCCEEECCCCcCCccCchhhhccCCCCCEEeCcCCcCccchhh
Confidence 999999999997 653 44332 222122344689999999999999998 8999999999999999999 6788
Q ss_pred cCCCCCCCEEECCCCCCCCcccccccccc-cceecccCccccccc-cCCCC--CCCCEEEccCCCCCCCchhhhhc----
Q 002315 209 LRKCVNLKHLDLGFNNLRSIAAFSEVSCH-IVKLVLRNNALTTLR-GIENL--KSLEGLDISYNIISTFSELEFLA---- 280 (937)
Q Consensus 209 L~~L~~L~~LdLS~N~Lt~L~~l~~~l~s-L~~L~Ls~N~Lt~Lp-~L~~L--~sL~~LdLS~N~Ls~l~~l~~L~---- 280 (937)
+..+++|+.|+|++|.++.+|.....+++ |+.|+|++|.|+.+| .+..+ ++|+.|+|++|.|.+..+ ..+.
T Consensus 349 ~~~l~~L~~L~L~~N~l~~lp~~l~~l~~~L~~L~Ls~N~l~~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p-~~l~~~~~ 427 (636)
T 4eco_A 349 FGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDG-KNFDPLDP 427 (636)
T ss_dssp CEEEEEESEEECCSSEEEECCTTSEEECTTCCEEECCSSCCSSCCSCCCTTCSSCEEEEECCSSCTTTTTT-CSSCTTCS
T ss_pred hCCCCCCCEEECCCCccccccHhhhhhcccCcEEEccCCcCcccchhhhhcccCccCEEECcCCcCCCcch-hhhccccc
Confidence 88889999999999999988877777788 999999999999887 44444 489999999999987543 4455
Q ss_pred ---CCCCCCEEEecCCCCCCCcchhhhHhhhcCCCceeccCCccCC
Q 002315 281 ---SLPYLLNLWLEGNPLCCSRWYRAQVFSYFAHPAKLKVDGKEIS 323 (937)
Q Consensus 281 ---~L~sL~~L~Ls~NpLt~~~~~r~~~~~~l~~L~~L~LdgN~Is 323 (937)
.+++|+.|+|++|.+...+ ...+..++.|+.|+|.+|.++
T Consensus 428 ~~~~~~~L~~L~Ls~N~l~~lp---~~~~~~l~~L~~L~Ls~N~l~ 470 (636)
T 4eco_A 428 TPFKGINVSSINLSNNQISKFP---KELFSTGSPLSSINLMGNMLT 470 (636)
T ss_dssp SCCCCCCEEEEECCSSCCCSCC---THHHHTTCCCSEEECCSSCCS
T ss_pred ccccCCCCCEEECcCCccCcCC---HHHHccCCCCCEEECCCCCCC
Confidence 6779999999999998544 455666889999999999886
No 13
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.89 E-value=9.7e-23 Score=236.07 Aligned_cols=159 Identities=18% Similarity=0.146 Sum_probs=132.6
Q ss_pred CCCCCccEEEccCCcCcc-chhhcCCCCCCcEEECCCCCCCCCc----CcCCCCCCCEEECCCCCCCC-cccc-cccccc
Q 002315 165 PQWNRLSFVSCSCNRLVI-MDESLQLLPAVETLDLSRNKFAKVD----NLRKCVNLKHLDLGFNNLRS-IAAF-SEVSCH 237 (937)
Q Consensus 165 ~~l~~L~~L~Ls~N~Ls~-LP~sL~~L~~L~~LdLs~N~L~~l~----~L~~L~~L~~LdLS~N~Lt~-L~~l-~~~l~s 237 (937)
..+++|++|++++|.++. +|..+..+++|++|+|++|+++.++ .+..+++|++|+|++|.++. ++.. ...+++
T Consensus 321 ~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~ 400 (520)
T 2z7x_B 321 SKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKS 400 (520)
T ss_dssp SSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTT
T ss_pred hhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCcc
Confidence 467889999999999985 7788899999999999999999753 47889999999999999998 7753 456689
Q ss_pred cceecccCcccccc-c-cCCCCCCCCEEEccCCCCCCCchhhhhcCCCCCCEEEecCCCCCCCcchhhhHhhhcCCCcee
Q 002315 238 IVKLVLRNNALTTL-R-GIENLKSLEGLDISYNIISTFSELEFLASLPYLLNLWLEGNPLCCSRWYRAQVFSYFAHPAKL 315 (937)
Q Consensus 238 L~~L~Ls~N~Lt~L-p-~L~~L~sL~~LdLS~N~Ls~l~~l~~L~~L~sL~~L~Ls~NpLt~~~~~r~~~~~~l~~L~~L 315 (937)
|+.|+|++|+|+.. + .+. ++|+.|+|++|+|+.+| ..+..+++|+.|+|++|+++..+. ..+..++.|+.+
T Consensus 401 L~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~l~~ip--~~~~~l~~L~~L~L~~N~l~~l~~---~~~~~l~~L~~L 473 (520)
T 2z7x_B 401 LLSLNMSSNILTDTIFRCLP--PRIKVLDLHSNKIKSIP--KQVVKLEALQELNVASNQLKSVPD---GIFDRLTSLQKI 473 (520)
T ss_dssp CCEEECCSSCCCGGGGGSCC--TTCCEEECCSSCCCCCC--GGGGGCTTCCEEECCSSCCCCCCT---TTTTTCTTCCEE
T ss_pred CCEEECcCCCCCcchhhhhc--ccCCEEECCCCcccccc--hhhhcCCCCCEEECCCCcCCccCH---HHhccCCcccEE
Confidence 99999999999763 3 332 79999999999999987 445699999999999999986652 246778999999
Q ss_pred ccCCccCChhhHHHH
Q 002315 316 KVDGKEISTRELWER 330 (937)
Q Consensus 316 ~LdgN~Is~~e~~~~ 330 (937)
+|++|++.|.....+
T Consensus 474 ~l~~N~~~c~c~~~~ 488 (520)
T 2z7x_B 474 WLHTNPWDCSCPRID 488 (520)
T ss_dssp ECCSSCBCCCHHHHH
T ss_pred ECcCCCCcccCCchH
Confidence 999999998775443
No 14
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.89 E-value=5.7e-23 Score=235.12 Aligned_cols=227 Identities=19% Similarity=0.202 Sum_probs=200.8
Q ss_pred cccccCCCCCcchHHHHHhcCCCCCcEEEccCCCCCCCCCCCCCCCCCCcEEEeeCCCCCccchhhHhhhhhhhhhhhcc
Q 002315 65 AYVSDLGDHRALEQLRRILKLLTSLKVVSALPPPARDPTPLSLLPFCRLKVLELRGCDLSTSAAKGLLELRHTLEKIICH 144 (937)
Q Consensus 65 l~vLdLs~n~~le~Lp~~L~~L~~Lk~LdLs~N~Is~~iP~sLs~L~~L~~LdLS~N~Ls~~lp~~L~~L~~Ll~LlL~~ 144 (937)
+..++|++|......+..|.++++|+.|+|++|.|.+..|..|..+++|++|+|++|.|+...+..|..+++|.++.+.+
T Consensus 77 l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 156 (452)
T 3zyi_A 77 TRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRN 156 (452)
T ss_dssp CSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEECCS
T ss_pred ccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccChhhhcccCCCCEEECCC
Confidence 34567888876666677899999999999999999999889999999999999999999987777899999999999999
Q ss_pred CCCcccchhcccchhcccCCCCCCCccEEEccC-CcCccchh-hcCCCCCCcEEECCCCCCCCCcCcCCCCCCCEEECCC
Q 002315 145 NSTNALRHVFASRIVEIKDSPQWNRLSFVSCSC-NRLVIMDE-SLQLLPAVETLDLSRNKFAKVDNLRKCVNLKHLDLGF 222 (937)
Q Consensus 145 N~L~~L~~l~~~~i~~l~~l~~l~~L~~L~Ls~-N~Ls~LP~-sL~~L~~L~~LdLs~N~L~~l~~L~~L~~L~~LdLS~ 222 (937)
|.+..++... +..+++|+.|++++ |.+..++. .|..+++|++|+|++|.|+.++.+..+++|+.|+|++
T Consensus 157 N~l~~~~~~~---------~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~Ls~ 227 (452)
T 3zyi_A 157 NPIESIPSYA---------FNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDMPNLTPLVGLEELEMSG 227 (452)
T ss_dssp CCCCEECTTT---------TTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSCCCCTTCTTCCEEECTT
T ss_pred CCcceeCHhH---------HhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCcccccccccccccccEEECcC
Confidence 9887766533 23678999999998 57777776 6889999999999999999999999999999999999
Q ss_pred CCCCCccc-ccccccccceecccCccccccc--cCCCCCCCCEEEccCCCCCCCchhhhhcCCCCCCEEEecCCCCCCCc
Q 002315 223 NNLRSIAA-FSEVSCHIVKLVLRNNALTTLR--GIENLKSLEGLDISYNIISTFSELEFLASLPYLLNLWLEGNPLCCSR 299 (937)
Q Consensus 223 N~Lt~L~~-l~~~l~sL~~L~Ls~N~Lt~Lp--~L~~L~sL~~LdLS~N~Ls~l~~l~~L~~L~sL~~L~Ls~NpLt~~~ 299 (937)
|.|+.+++ .+..+++|+.|+|++|.|+.++ .+..+++|+.|+|++|+|+.++. ..+..+++|+.|+|++||+.|+|
T Consensus 228 N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~-~~~~~l~~L~~L~L~~Np~~CdC 306 (452)
T 3zyi_A 228 NHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPH-DLFTPLRYLVELHLHHNPWNCDC 306 (452)
T ss_dssp SCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCT-TSSTTCTTCCEEECCSSCEECST
T ss_pred CcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccCh-HHhccccCCCEEEccCCCcCCCC
Confidence 99998754 5567799999999999999974 78999999999999999999875 66788999999999999999998
Q ss_pred ch
Q 002315 300 WY 301 (937)
Q Consensus 300 ~~ 301 (937)
..
T Consensus 307 ~~ 308 (452)
T 3zyi_A 307 DI 308 (452)
T ss_dssp TT
T ss_pred Cc
Confidence 54
No 15
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.89 E-value=2.7e-23 Score=253.69 Aligned_cols=246 Identities=21% Similarity=0.176 Sum_probs=195.0
Q ss_pred cccccCCCCCcchHHHHHhcCCCCCcEEEccCCCCCCCCCCCCCCCCCCcEEEeeCCCCCccchhhHhhhhhhhhhhhcc
Q 002315 65 AYVSDLGDHRALEQLRRILKLLTSLKVVSALPPPARDPTPLSLLPFCRLKVLELRGCDLSTSAAKGLLELRHTLEKIICH 144 (937)
Q Consensus 65 l~vLdLs~n~~le~Lp~~L~~L~~Lk~LdLs~N~Is~~iP~sLs~L~~L~~LdLS~N~Ls~~lp~~L~~L~~Ll~LlL~~ 144 (937)
+..+++++|...+.+|..+.++++|+.|+|++|.+++.+|..|..+++|++|+|++|.+++.+|..+..+++|..+.+.+
T Consensus 396 L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~ 475 (768)
T 3rgz_A 396 LQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDF 475 (768)
T ss_dssp CCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCS
T ss_pred ccEEECCCCccccccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecC
Confidence 44566777766667777888888888888888888888888888888888888888888888888888888888888888
Q ss_pred CCCcc-cchhcccchhcccCCCCCCCccEEEccCCcCc-cchhhcCCCCCCcEEECCCCCCCC-Cc-CcCCCCCCCEEEC
Q 002315 145 NSTNA-LRHVFASRIVEIKDSPQWNRLSFVSCSCNRLV-IMDESLQLLPAVETLDLSRNKFAK-VD-NLRKCVNLKHLDL 220 (937)
Q Consensus 145 N~L~~-L~~l~~~~i~~l~~l~~l~~L~~L~Ls~N~Ls-~LP~sL~~L~~L~~LdLs~N~L~~-l~-~L~~L~~L~~LdL 220 (937)
|.+.. ++.. +..+++|++|++++|++. .+|..++.+++|+.|+|++|.+.+ ++ .+..+++|+.|+|
T Consensus 476 N~l~~~~p~~----------l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L 545 (768)
T 3rgz_A 476 NDLTGEIPSG----------LSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDL 545 (768)
T ss_dssp SCCCSCCCGG----------GGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEEC
T ss_pred CcccCcCCHH----------HhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEEC
Confidence 87653 2222 135678999999999998 788889999999999999999985 33 7888999999999
Q ss_pred CCCCCCC-cccc--------------------------------------------------------------------
Q 002315 221 GFNNLRS-IAAF-------------------------------------------------------------------- 231 (937)
Q Consensus 221 S~N~Lt~-L~~l-------------------------------------------------------------------- 231 (937)
++|.+++ +|..
T Consensus 546 s~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~ 625 (768)
T 3rgz_A 546 NTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTS 625 (768)
T ss_dssp CSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECC
T ss_pred CCCccCCcCChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhccccccccccccceecccCc
Confidence 9998763 3321
Q ss_pred --cccccccceecccCccccc-cc-cCCCCCCCCEEEccCCCCCCCchhhhhcCCCCCCEEEecCCCCCCCcchhhhHhh
Q 002315 232 --SEVSCHIVKLVLRNNALTT-LR-GIENLKSLEGLDISYNIISTFSELEFLASLPYLLNLWLEGNPLCCSRWYRAQVFS 307 (937)
Q Consensus 232 --~~~l~sL~~L~Ls~N~Lt~-Lp-~L~~L~sL~~LdLS~N~Ls~l~~l~~L~~L~sL~~L~Ls~NpLt~~~~~r~~~~~ 307 (937)
...++.|+.|+|++|++++ +| .++.+++|+.|+|++|.+++..+ ..++.+++|+.|+|++|.++... +..+.
T Consensus 626 ~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip-~~l~~L~~L~~LdLs~N~l~g~i---p~~l~ 701 (768)
T 3rgz_A 626 PTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIP-DEVGDLRGLNILDLSSNKLDGRI---PQAMS 701 (768)
T ss_dssp CSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCC-GGGGGCTTCCEEECCSSCCEECC---CGGGG
T ss_pred hhhhccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCC-hHHhCCCCCCEEECCCCcccCcC---ChHHh
Confidence 1123578889999999986 55 78899999999999999985433 67889999999999999997442 35677
Q ss_pred hcCCCceeccCCccCCh
Q 002315 308 YFAHPAKLKVDGKEIST 324 (937)
Q Consensus 308 ~l~~L~~L~LdgN~Is~ 324 (937)
.++.|+.++|++|+++.
T Consensus 702 ~l~~L~~L~ls~N~l~g 718 (768)
T 3rgz_A 702 ALTMLTEIDLSNNNLSG 718 (768)
T ss_dssp GCCCCSEEECCSSEEEE
T ss_pred CCCCCCEEECcCCcccc
Confidence 88899999999998864
No 16
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.89 E-value=1.4e-22 Score=250.96 Aligned_cols=238 Identities=18% Similarity=0.177 Sum_probs=201.7
Q ss_pred HHHHhcCCCCCcEEEccCCCCCC-----------------CCCCCCC--CCCCCcEEEeeCCCCCccchhhHhhhhhhhh
Q 002315 79 LRRILKLLTSLKVVSALPPPARD-----------------PTPLSLL--PFCRLKVLELRGCDLSTSAAKGLLELRHTLE 139 (937)
Q Consensus 79 Lp~~L~~L~~Lk~LdLs~N~Is~-----------------~iP~sLs--~L~~L~~LdLS~N~Ls~~lp~~L~~L~~Ll~ 139 (937)
+|..|.+|++|+.|+|++|.+++ .+|..++ .+++|++|+|++|.+.+.+|..|..+++|..
T Consensus 440 IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~ 519 (876)
T 4ecn_A 440 ISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQS 519 (876)
T ss_dssp ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCE
T ss_pred hhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCE
Confidence 89999999999999999999998 3899988 9999999999999999999999999999999
Q ss_pred hhhccCC-Ccc--cchhcccchhccc-CCCCCCCccEEEccCCcCccchh--hcCCCCCCcEEECCCCCCCCCcCcCCCC
Q 002315 140 KIICHNS-TNA--LRHVFASRIVEIK-DSPQWNRLSFVSCSCNRLVIMDE--SLQLLPAVETLDLSRNKFAKVDNLRKCV 213 (937)
Q Consensus 140 LlL~~N~-L~~--L~~l~~~~i~~l~-~l~~l~~L~~L~Ls~N~Ls~LP~--sL~~L~~L~~LdLs~N~L~~l~~L~~L~ 213 (937)
+.+.+|. +.. ++..+ ..+. .+..+++|+.|+|++|.|+.+|. .+..+++|+.|+|++|.|..+|.|..++
T Consensus 520 L~Ls~N~~lsg~~iP~~i----~~L~~~~~~l~~L~~L~Ls~N~L~~ip~~~~l~~L~~L~~L~Ls~N~l~~lp~~~~L~ 595 (876)
T 4ecn_A 520 LNIACNRGISAAQLKADW----TRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVRHLEAFGTNV 595 (876)
T ss_dssp EECTTCTTSCHHHHHHHH----HHHHHCTTTTTTCCEEECCSSCCCBCCCHHHHTTCTTCCEEECTTSCCCBCCCCCTTS
T ss_pred EECcCCCCcccccchHHH----HhhhhcccccCCccEEEeeCCcCCccCChhhhhcCCCCCEEECCCCCcccchhhcCCC
Confidence 9999997 653 44332 2222 44567899999999999999998 8999999999999999999888999999
Q ss_pred CCCEEECCCCCCCCcccccccccc-cceecccCccccccc-cCCCCC--CCCEEEccCCCCCCCch-h-hhhc--CCCCC
Q 002315 214 NLKHLDLGFNNLRSIAAFSEVSCH-IVKLVLRNNALTTLR-GIENLK--SLEGLDISYNIISTFSE-L-EFLA--SLPYL 285 (937)
Q Consensus 214 ~L~~LdLS~N~Lt~L~~l~~~l~s-L~~L~Ls~N~Lt~Lp-~L~~L~--sL~~LdLS~N~Ls~l~~-l-~~L~--~L~sL 285 (937)
+|+.|+|++|.|+.+|.....+++ |+.|+|++|.|+.+| .+..++ +|+.|+|++|.|.+..+ + ..+. .+++|
T Consensus 596 ~L~~L~Ls~N~l~~lp~~l~~l~~~L~~L~Ls~N~L~~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L 675 (876)
T 4ecn_A 596 KLTDLKLDYNQIEEIPEDFCAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINA 675 (876)
T ss_dssp EESEEECCSSCCSCCCTTSCEECTTCCEEECCSSCCCSCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCE
T ss_pred cceEEECcCCccccchHHHhhccccCCEEECcCCCCCcCchhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCc
Confidence 999999999999988877777788 999999999999987 445444 49999999999977431 1 1122 34589
Q ss_pred CEEEecCCCCCCCcchhhhHhhhcCCCceeccCCccCC
Q 002315 286 LNLWLEGNPLCCSRWYRAQVFSYFAHPAKLKVDGKEIS 323 (937)
Q Consensus 286 ~~L~Ls~NpLt~~~~~r~~~~~~l~~L~~L~LdgN~Is 323 (937)
+.|+|++|.+...+ ...+..++.|+.|+|++|.++
T Consensus 676 ~~L~Ls~N~L~~lp---~~~~~~l~~L~~L~Ls~N~L~ 710 (876)
T 4ecn_A 676 STVTLSYNEIQKFP---TELFATGSPISTIILSNNLMT 710 (876)
T ss_dssp EEEECCSSCCCSCC---HHHHHTTCCCSEEECCSCCCS
T ss_pred CEEEccCCcCCccC---HHHHccCCCCCEEECCCCcCC
Confidence 99999999998544 455667889999999999886
No 17
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.89 E-value=2.3e-22 Score=220.02 Aligned_cols=267 Identities=17% Similarity=0.166 Sum_probs=191.7
Q ss_pred CCcEEEecCCCccchHhhhhhcccchhccCCCCCcccccccccCCCCCcchHHHHHhcCCCCCcEEEccCCCCCCCCCCC
Q 002315 27 GSIVLKLNPAGLHYVQSRLEALRELERLLAGAPLDYLRAYVSDLGDHRALEQLRRILKLLTSLKVVSALPPPARDPTPLS 106 (937)
Q Consensus 27 ~l~~L~L~~~~L~~Lp~~L~~L~~Le~L~~g~~L~~L~l~vLdLs~n~~le~Lp~~L~~L~~Lk~LdLs~N~Is~~iP~s 106 (937)
..+.+++...++..+|..+. + .+..+++++|...+..+..|.++++|++|+|++|.+++..|..
T Consensus 32 ~l~~l~~~~~~l~~lp~~~~--~--------------~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~ 95 (330)
T 1xku_A 32 HLRVVQCSDLGLEKVPKDLP--P--------------DTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGA 95 (330)
T ss_dssp ETTEEECTTSCCCSCCCSCC--T--------------TCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTT
T ss_pred CCeEEEecCCCccccCccCC--C--------------CCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHH
Confidence 35678888888877775332 1 1223566666544434447888999999999999998888888
Q ss_pred CCCCCCCcEEEeeCCCCCccchhhHhhhhhhhhhhhccCCCcccchhcccchhcccCCCCCCCccEEEccCCcCc---cc
Q 002315 107 LLPFCRLKVLELRGCDLSTSAAKGLLELRHTLEKIICHNSTNALRHVFASRIVEIKDSPQWNRLSFVSCSCNRLV---IM 183 (937)
Q Consensus 107 Ls~L~~L~~LdLS~N~Ls~~lp~~L~~L~~Ll~LlL~~N~L~~L~~l~~~~i~~l~~l~~l~~L~~L~Ls~N~Ls---~L 183 (937)
|..+++|++|+|++|.++. +|..+. ++|.++.+.+|.+..+....+ ..+++|+.|++++|.+. ..
T Consensus 96 ~~~l~~L~~L~Ls~n~l~~-l~~~~~--~~L~~L~l~~n~l~~~~~~~~---------~~l~~L~~L~l~~n~l~~~~~~ 163 (330)
T 1xku_A 96 FAPLVKLERLYLSKNQLKE-LPEKMP--KTLQELRVHENEITKVRKSVF---------NGLNQMIVVELGTNPLKSSGIE 163 (330)
T ss_dssp TTTCTTCCEEECCSSCCSB-CCSSCC--TTCCEEECCSSCCCBBCHHHH---------TTCTTCCEEECCSSCCCGGGBC
T ss_pred hcCCCCCCEEECCCCcCCc-cChhhc--ccccEEECCCCcccccCHhHh---------cCCccccEEECCCCcCCccCcC
Confidence 9999999999999999875 454443 567778888887766554322 24668888888888886 34
Q ss_pred hhhcCCCCCCcEEECCCCCCCCCcCcCCCCCCCEEECCCCCCCCcc-cccccccccceecccCccccccc--cCCCCCCC
Q 002315 184 DESLQLLPAVETLDLSRNKFAKVDNLRKCVNLKHLDLGFNNLRSIA-AFSEVSCHIVKLVLRNNALTTLR--GIENLKSL 260 (937)
Q Consensus 184 P~sL~~L~~L~~LdLs~N~L~~l~~L~~L~~L~~LdLS~N~Lt~L~-~l~~~l~sL~~L~Ls~N~Lt~Lp--~L~~L~sL 260 (937)
+..+..+++|+.|++++|.++.++... .++|+.|+|++|.++.++ ..+..+++|+.|+|++|.|+.++ .+..+++|
T Consensus 164 ~~~~~~l~~L~~L~l~~n~l~~l~~~~-~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L 242 (330)
T 1xku_A 164 NGAFQGMKKLSYIRIADTNITTIPQGL-PPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHL 242 (330)
T ss_dssp TTGGGGCTTCCEEECCSSCCCSCCSSC-CTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTC
T ss_pred hhhccCCCCcCEEECCCCccccCCccc-cccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCC
Confidence 557788888888888888888775322 278888888888888764 34556678888888888888764 57788888
Q ss_pred CEEEccCCCCCCCchhhhhcCCCCCCEEEecCCCCCCCcchhhh---HhhhcCCCceeccCCccCCh
Q 002315 261 EGLDISYNIISTFSELEFLASLPYLLNLWLEGNPLCCSRWYRAQ---VFSYFAHPAKLKVDGKEIST 324 (937)
Q Consensus 261 ~~LdLS~N~Ls~l~~l~~L~~L~sL~~L~Ls~NpLt~~~~~r~~---~~~~l~~L~~L~LdgN~Is~ 324 (937)
+.|+|++|.|+.+| ..+..+++|+.|+|++|+|+..+..... .......+..++|.+|++..
T Consensus 243 ~~L~L~~N~l~~lp--~~l~~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~ 307 (330)
T 1xku_A 243 RELHLNNNKLVKVP--GGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQY 307 (330)
T ss_dssp CEEECCSSCCSSCC--TTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCG
T ss_pred CEEECCCCcCccCC--hhhccCCCcCEEECCCCcCCccChhhcCCcccccccccccceEeecCcccc
Confidence 88888888888776 4577888888888888888765421100 01123567778888888864
No 18
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.89 E-value=1.1e-23 Score=230.45 Aligned_cols=245 Identities=19% Similarity=0.173 Sum_probs=205.2
Q ss_pred ccccccCCCCCcch--HHHHHhcCCCCCcEEEccC-CCCCCCCCCCCCCCCCCcEEEeeCCCCCccchhhHhhhhhhhhh
Q 002315 64 RAYVSDLGDHRALE--QLRRILKLLTSLKVVSALP-PPARDPTPLSLLPFCRLKVLELRGCDLSTSAAKGLLELRHTLEK 140 (937)
Q Consensus 64 ~l~vLdLs~n~~le--~Lp~~L~~L~~Lk~LdLs~-N~Is~~iP~sLs~L~~L~~LdLS~N~Ls~~lp~~L~~L~~Ll~L 140 (937)
++..++++++...+ .+|..+.++++|++|+|++ |.+.+.+|..|..+++|++|+|++|.+++.+|..|..+++|.++
T Consensus 51 ~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L 130 (313)
T 1ogq_A 51 RVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTL 130 (313)
T ss_dssp CEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEE
T ss_pred eEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEE
Confidence 34567788887766 7888999999999999995 99999999999999999999999999998899999999999999
Q ss_pred hhccCCCc-ccchhcccchhcccCCCCCCCccEEEccCCcCc-cchhhcCCCC-CCcEEECCCCCCCC-C-cCcCCCCCC
Q 002315 141 IICHNSTN-ALRHVFASRIVEIKDSPQWNRLSFVSCSCNRLV-IMDESLQLLP-AVETLDLSRNKFAK-V-DNLRKCVNL 215 (937)
Q Consensus 141 lL~~N~L~-~L~~l~~~~i~~l~~l~~l~~L~~L~Ls~N~Ls-~LP~sL~~L~-~L~~LdLs~N~L~~-l-~~L~~L~~L 215 (937)
.+.+|.+. .++..+ ..+++|++|++++|.|+ .+|..+..++ +|+.|+|++|.+.+ + ..+..+. |
T Consensus 131 ~Ls~N~l~~~~p~~~----------~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L 199 (313)
T 1ogq_A 131 DFSYNALSGTLPPSI----------SSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-L 199 (313)
T ss_dssp ECCSSEEESCCCGGG----------GGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-C
T ss_pred eCCCCccCCcCChHH----------hcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-c
Confidence 99999766 333222 35679999999999999 8899999998 99999999999984 3 3677776 9
Q ss_pred CEEECCCCCCCCcc-cccccccccceecccCccccc-cccCCCCCCCCEEEccCCCCCCCchhhhhcCCCCCCEEEecCC
Q 002315 216 KHLDLGFNNLRSIA-AFSEVSCHIVKLVLRNNALTT-LRGIENLKSLEGLDISYNIISTFSELEFLASLPYLLNLWLEGN 293 (937)
Q Consensus 216 ~~LdLS~N~Lt~L~-~l~~~l~sL~~L~Ls~N~Lt~-Lp~L~~L~sL~~LdLS~N~Ls~l~~l~~L~~L~sL~~L~Ls~N 293 (937)
+.|+|++|.++... ..+..+++|+.|+|++|.++. ++.+..+++|++|+|++|.|++..+ ..+..+++|+.|+|++|
T Consensus 200 ~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~l~~L~~L~Ls~N~l~~~~p-~~l~~l~~L~~L~Ls~N 278 (313)
T 1ogq_A 200 AFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLP-QGLTQLKFLHSLNVSFN 278 (313)
T ss_dssp SEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGGGCCCCTTCCEEECCSSCCEECCC-GGGGGCTTCCEEECCSS
T ss_pred cEEECcCCcccCcCCHHHhcCCCCCEEECCCCceeeecCcccccCCCCEEECcCCcccCcCC-hHHhcCcCCCEEECcCC
Confidence 99999999998644 455677999999999999987 4578889999999999999984332 67889999999999999
Q ss_pred CCCCCcchhhhHhhhcCCCceeccCCccCCh
Q 002315 294 PLCCSRWYRAQVFSYFAHPAKLKVDGKEIST 324 (937)
Q Consensus 294 pLt~~~~~r~~~~~~l~~L~~L~LdgN~Is~ 324 (937)
+++.... . ...++.|+.++|.+|+.-+
T Consensus 279 ~l~~~ip---~-~~~l~~L~~l~l~~N~~lc 305 (313)
T 1ogq_A 279 NLCGEIP---Q-GGNLQRFDVSAYANNKCLC 305 (313)
T ss_dssp EEEEECC---C-STTGGGSCGGGTCSSSEEE
T ss_pred cccccCC---C-CccccccChHHhcCCCCcc
Confidence 9974321 1 2567889999999998544
No 19
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.88 E-value=3.5e-22 Score=218.60 Aligned_cols=238 Identities=17% Similarity=0.171 Sum_probs=190.5
Q ss_pred ccccCCCCCcchHHHHHhcCCCCCcEEEccCCCCCCCCCCCCCCCCCCcEEEeeCCCCCccchhhHhhhhhhhhhhhccC
Q 002315 66 YVSDLGDHRALEQLRRILKLLTSLKVVSALPPPARDPTPLSLLPFCRLKVLELRGCDLSTSAAKGLLELRHTLEKIICHN 145 (937)
Q Consensus 66 ~vLdLs~n~~le~Lp~~L~~L~~Lk~LdLs~N~Is~~iP~sLs~L~~L~~LdLS~N~Ls~~lp~~L~~L~~Ll~LlL~~N 145 (937)
..++++++. +..+|..+ .++|+.|+|++|.+++..+..|..+++|++|+|++|.+++..|..|..+++|.++.+.+|
T Consensus 34 ~~l~~~~~~-l~~lp~~~--~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n 110 (330)
T 1xku_A 34 RVVQCSDLG-LEKVPKDL--PPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKN 110 (330)
T ss_dssp TEEECTTSC-CCSCCCSC--CTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSS
T ss_pred eEEEecCCC-ccccCccC--CCCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCC
Confidence 345555443 33455433 368899999999998887778999999999999999999877888999999999999998
Q ss_pred CCcccchhcccchhcccCCCCCCCccEEEccCCcCccchh-hcCCCCCCcEEECCCCCCCC--C--cCcCCCCCCCEEEC
Q 002315 146 STNALRHVFASRIVEIKDSPQWNRLSFVSCSCNRLVIMDE-SLQLLPAVETLDLSRNKFAK--V--DNLRKCVNLKHLDL 220 (937)
Q Consensus 146 ~L~~L~~l~~~~i~~l~~l~~l~~L~~L~Ls~N~Ls~LP~-sL~~L~~L~~LdLs~N~L~~--l--~~L~~L~~L~~LdL 220 (937)
.+..++..+ +++|+.|++++|.+..++. .+..+++|+.|++++|.+.. + ..+..+++|+.|++
T Consensus 111 ~l~~l~~~~------------~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l 178 (330)
T 1xku_A 111 QLKELPEKM------------PKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRI 178 (330)
T ss_dssp CCSBCCSSC------------CTTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEEC
T ss_pred cCCccChhh------------cccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEEC
Confidence 877665432 2578999999999987655 68889999999999998864 2 36788899999999
Q ss_pred CCCCCCCcccccccccccceecccCccccccc--cCCCCCCCCEEEccCCCCCCCchhhhhcCCCCCCEEEecCCCCCCC
Q 002315 221 GFNNLRSIAAFSEVSCHIVKLVLRNNALTTLR--GIENLKSLEGLDISYNIISTFSELEFLASLPYLLNLWLEGNPLCCS 298 (937)
Q Consensus 221 S~N~Lt~L~~l~~~l~sL~~L~Ls~N~Lt~Lp--~L~~L~sL~~LdLS~N~Ls~l~~l~~L~~L~sL~~L~Ls~NpLt~~ 298 (937)
++|.++.++.... ++|+.|+|++|.|+.++ .+..+++|+.|+|++|.|+.++. ..+..+++|+.|+|++|.++..
T Consensus 179 ~~n~l~~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~~~l~~L~~L~L~~N~l~~l 255 (330)
T 1xku_A 179 ADTNITTIPQGLP--PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDN-GSLANTPHLRELHLNNNKLVKV 255 (330)
T ss_dssp CSSCCCSCCSSCC--TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECT-TTGGGSTTCCEEECCSSCCSSC
T ss_pred CCCccccCCcccc--ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeCh-hhccCCCCCCEEECCCCcCccC
Confidence 9999988876443 78999999999998863 78889999999999999988764 4678889999999999998855
Q ss_pred cchhhhHhhhcCCCceeccCCccCChh
Q 002315 299 RWYRAQVFSYFAHPAKLKVDGKEISTR 325 (937)
Q Consensus 299 ~~~r~~~~~~l~~L~~L~LdgN~Is~~ 325 (937)
+ ..+..++.|+.++|++|+++..
T Consensus 256 p----~~l~~l~~L~~L~l~~N~i~~~ 278 (330)
T 1xku_A 256 P----GGLADHKYIQVVYLHNNNISAI 278 (330)
T ss_dssp C----TTTTTCSSCCEEECCSSCCCCC
T ss_pred C----hhhccCCCcCEEECCCCcCCcc
Confidence 4 3356778899999999998754
No 20
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.88 E-value=2.4e-22 Score=233.72 Aligned_cols=155 Identities=21% Similarity=0.230 Sum_probs=105.5
Q ss_pred CCCccEEEccCCcCcc-chh---hcCCCCCCcEEECCCCCCCCCc----CcCCCCCCCEEECCCCCCCCccccccccccc
Q 002315 167 WNRLSFVSCSCNRLVI-MDE---SLQLLPAVETLDLSRNKFAKVD----NLRKCVNLKHLDLGFNNLRSIAAFSEVSCHI 238 (937)
Q Consensus 167 l~~L~~L~Ls~N~Ls~-LP~---sL~~L~~L~~LdLs~N~L~~l~----~L~~L~~L~~LdLS~N~Lt~L~~l~~~l~sL 238 (937)
+++|++|++++|.+.. +|. .+..+++|++|+|++|.++.++ .+..+++|++|+|++|.|+.+|.....+++|
T Consensus 333 l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~~~~L 412 (549)
T 2z81_A 333 LKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFHPMPDSCQWPEKM 412 (549)
T ss_dssp CTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCCCCCCCSCCCCCTTC
T ss_pred CccccEEEccCCccccccccchhhhhccccCcEEEccCCcccccccchhhhhcCCCCCEEECCCCCCccCChhhcccccc
Confidence 4566666666666652 222 2455666666666666666543 2566666677777777666666544445566
Q ss_pred ceecccCcccccccc-------------------CCCCCCCCEEEccCCCCCCCchhhhhcCCCCCCEEEecCCCCCCCc
Q 002315 239 VKLVLRNNALTTLRG-------------------IENLKSLEGLDISYNIISTFSELEFLASLPYLLNLWLEGNPLCCSR 299 (937)
Q Consensus 239 ~~L~Ls~N~Lt~Lp~-------------------L~~L~sL~~LdLS~N~Ls~l~~l~~L~~L~sL~~L~Ls~NpLt~~~ 299 (937)
+.|+|++|.|+.++. +..+++|+.|+|++|+|+.+|. ...+++|+.|+|++|+++..+
T Consensus 413 ~~L~Ls~N~l~~l~~~~~~~L~~L~Ls~N~l~~~~~~l~~L~~L~Ls~N~l~~ip~---~~~l~~L~~L~Ls~N~l~~~~ 489 (549)
T 2z81_A 413 RFLNLSSTGIRVVKTCIPQTLEVLDVSNNNLDSFSLFLPRLQELYISRNKLKTLPD---ASLFPVLLVMKISRNQLKSVP 489 (549)
T ss_dssp CEEECTTSCCSCCCTTSCTTCSEEECCSSCCSCCCCCCTTCCEEECCSSCCSSCCC---GGGCTTCCEEECCSSCCCCCC
T ss_pred cEEECCCCCcccccchhcCCceEEECCCCChhhhcccCChhcEEECCCCccCcCCC---cccCccCCEEecCCCccCCcC
Confidence 666666666554321 1367888888888888888774 356888999999999998654
Q ss_pred chhhhHhhhcCCCceeccCCccCChhhH
Q 002315 300 WYRAQVFSYFAHPAKLKVDGKEISTREL 327 (937)
Q Consensus 300 ~~r~~~~~~l~~L~~L~LdgN~Is~~e~ 327 (937)
...+..++.|+.++|++|++.+...
T Consensus 490 ---~~~~~~l~~L~~L~l~~N~~~~~~~ 514 (549)
T 2z81_A 490 ---DGIFDRLTSLQKIWLHTNPWDCSCP 514 (549)
T ss_dssp ---TTGGGGCTTCCEEECCSSCBCCCHH
T ss_pred ---HHHHhcCcccCEEEecCCCccCCCc
Confidence 3456778999999999999998765
No 21
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.88 E-value=4.7e-22 Score=237.78 Aligned_cols=241 Identities=20% Similarity=0.169 Sum_probs=151.0
Q ss_pred HhcCCCCCcEEEccCCCCCCCCCCCCCCCCCCcEEEe----------------------------eCCCCCccchhhHhh
Q 002315 82 ILKLLTSLKVVSALPPPARDPTPLSLLPFCRLKVLEL----------------------------RGCDLSTSAAKGLLE 133 (937)
Q Consensus 82 ~L~~L~~Lk~LdLs~N~Is~~iP~sLs~L~~L~~LdL----------------------------S~N~Ls~~lp~~L~~ 133 (937)
.+..+++|+.|+|++|.+.+..|..|..+++|++|+| ++|.+++..|..|..
T Consensus 324 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~ 403 (680)
T 1ziw_A 324 SFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSW 403 (680)
T ss_dssp TTTTCTTCCEEECCSCCBCCCCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTT
T ss_pred hcccCCCCCEEECCCCccCCCChhHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhC
Confidence 3445555666666555555555555555444444443 444555555666777
Q ss_pred hhhhhhhhhccCCCcc-cchhcccc-------------hhcc--cCCCCCCCccEEEccCCcCc---cchhhcCCCCCCc
Q 002315 134 LRHTLEKIICHNSTNA-LRHVFASR-------------IVEI--KDSPQWNRLSFVSCSCNRLV---IMDESLQLLPAVE 194 (937)
Q Consensus 134 L~~Ll~LlL~~N~L~~-L~~l~~~~-------------i~~l--~~l~~l~~L~~L~Ls~N~Ls---~LP~sL~~L~~L~ 194 (937)
+++|..+.+.+|.+.. ++...+.. +..+ ..+..++.|+.|++++|.+. .+|..+..+++|+
T Consensus 404 l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~ 483 (680)
T 1ziw_A 404 LGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLT 483 (680)
T ss_dssp CTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCC
T ss_pred CCCCCEEeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCcccccCCCCC
Confidence 7777777777776542 22111110 0000 11234566777777776664 4566677777777
Q ss_pred EEECCCCCCCCCc--CcCCCCCCCEEECCCCCCCCccc---------ccccccccceecccCccccccc--cCCCCCCCC
Q 002315 195 TLDLSRNKFAKVD--NLRKCVNLKHLDLGFNNLRSIAA---------FSEVSCHIVKLVLRNNALTTLR--GIENLKSLE 261 (937)
Q Consensus 195 ~LdLs~N~L~~l~--~L~~L~~L~~LdLS~N~Lt~L~~---------l~~~l~sL~~L~Ls~N~Lt~Lp--~L~~L~sL~ 261 (937)
.|+|++|.|+.++ .|..+++|+.|+|++|.++.++. .+..+++|+.|+|++|+|+.+| .+..+++|+
T Consensus 484 ~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~ 563 (680)
T 1ziw_A 484 ILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELK 563 (680)
T ss_dssp EEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred EEECCCCCCCcCChhhhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCCCCCCHHHcccccCcc
Confidence 7777777777764 46777777788887777776532 1344577778888888777775 467777888
Q ss_pred EEEccCCCCCCCchhhhhcCCCCCCEEEecCCCCCCCcchhhhHhh-hcCCCceeccCCccCChhh
Q 002315 262 GLDISYNIISTFSELEFLASLPYLLNLWLEGNPLCCSRWYRAQVFS-YFAHPAKLKVDGKEISTRE 326 (937)
Q Consensus 262 ~LdLS~N~Ls~l~~l~~L~~L~sL~~L~Ls~NpLt~~~~~r~~~~~-~l~~L~~L~LdgN~Is~~e 326 (937)
.|+|++|+|+.++. ..+..+++|+.|+|++|.++..+ ...+. .++.|+.++|.+|++.|..
T Consensus 564 ~L~Ls~N~l~~l~~-~~~~~l~~L~~L~L~~N~l~~~~---~~~~~~~~~~L~~l~l~~N~~~c~c 625 (680)
T 1ziw_A 564 IIDLGLNNLNTLPA-SVFNNQVSLKSLNLQKNLITSVE---KKVFGPAFRNLTELDMRFNPFDCTC 625 (680)
T ss_dssp EEECCSSCCCCCCT-TTTTTCTTCCEEECTTSCCCBCC---HHHHHHHHTTCSEEECTTCCCCBCC
T ss_pred eeECCCCCCCcCCH-hHhCCCCCCCEEECCCCcCCccC---hhHhcccccccCEEEccCCCcccCC
Confidence 88888888877764 45667777888888888776543 23344 5677778888888877654
No 22
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.88 E-value=2.9e-22 Score=227.58 Aligned_cols=275 Identities=21% Similarity=0.233 Sum_probs=208.4
Q ss_pred hcCCcEEEecCCCcc-ch-HhhhhhcccchhccCCC-CCc---------ccccccccCCCCCcchHHHHH--hcCCCCCc
Q 002315 25 IEGSIVLKLNPAGLH-YV-QSRLEALRELERLLAGA-PLD---------YLRAYVSDLGDHRALEQLRRI--LKLLTSLK 90 (937)
Q Consensus 25 L~~l~~L~L~~~~L~-~L-p~~L~~L~~Le~L~~g~-~L~---------~L~l~vLdLs~n~~le~Lp~~--L~~L~~Lk 90 (937)
+..++.|++..+.+. .+ +..+..+++|+.|.... .+. .-.+..+++++|...+.++.. +..+++|+
T Consensus 53 l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~ 132 (455)
T 3v47_A 53 LQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLE 132 (455)
T ss_dssp CTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCC
T ss_pred CccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCC
Confidence 556778888877764 34 44566666666655421 111 112446788888877766665 89999999
Q ss_pred EEEccCCCCCCCCCCC-CCCCCCCcEEEeeCCCCCccchhhHhhh----------------------------------h
Q 002315 91 VVSALPPPARDPTPLS-LLPFCRLKVLELRGCDLSTSAAKGLLEL----------------------------------R 135 (937)
Q Consensus 91 ~LdLs~N~Is~~iP~s-Ls~L~~L~~LdLS~N~Ls~~lp~~L~~L----------------------------------~ 135 (937)
.|+|++|.+.+..|.. |..+++|++|+|++|.+++..+..+..+ +
T Consensus 133 ~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~ 212 (455)
T 3v47_A 133 MLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNT 212 (455)
T ss_dssp EEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTC
T ss_pred EEECCCCccCccCcccccCCCCcccEEeCCCCcccccChhhhhccccccccccccccCcccccchhhccccccccccccc
Confidence 9999999999887876 8899999999999999998777766655 3
Q ss_pred hhhhhhhccCCCcccch-hccc-----chhcc-----------------cC-----C--CCCCCccEEEccCCcCccc-h
Q 002315 136 HTLEKIICHNSTNALRH-VFAS-----RIVEI-----------------KD-----S--PQWNRLSFVSCSCNRLVIM-D 184 (937)
Q Consensus 136 ~Ll~LlL~~N~L~~L~~-l~~~-----~i~~l-----------------~~-----l--~~l~~L~~L~Ls~N~Ls~L-P 184 (937)
++..+.+.+|.+..... .+.. .+..+ .. + ...++|+.|++++|.+..+ |
T Consensus 213 ~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~ 292 (455)
T 3v47_A 213 SITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLK 292 (455)
T ss_dssp EEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECT
T ss_pred eeeeEecCCCcccccchhhhhccccccceeeEeeccccccccccchhhhccCcccccccccccCceEEEecCccccccch
Confidence 45555566665432110 0000 00000 00 0 0235899999999999954 6
Q ss_pred hhcCCCCCCcEEECCCCCCCCCc--CcCCCCCCCEEECCCCCCCCccc-ccccccccceecccCcccccc-c-cCCCCCC
Q 002315 185 ESLQLLPAVETLDLSRNKFAKVD--NLRKCVNLKHLDLGFNNLRSIAA-FSEVSCHIVKLVLRNNALTTL-R-GIENLKS 259 (937)
Q Consensus 185 ~sL~~L~~L~~LdLs~N~L~~l~--~L~~L~~L~~LdLS~N~Lt~L~~-l~~~l~sL~~L~Ls~N~Lt~L-p-~L~~L~s 259 (937)
..+..+++|+.|+|++|.+..++ .|..+++|+.|+|++|.|+.+++ .+..+++|+.|+|++|+|+.+ + .+..+++
T Consensus 293 ~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~ 372 (455)
T 3v47_A 293 SVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPN 372 (455)
T ss_dssp TTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTT
T ss_pred hhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEECCCCcccccChhhcccccc
Confidence 68999999999999999999863 78899999999999999998754 556679999999999999997 3 7899999
Q ss_pred CCEEEccCCCCCCCchhhhhcCCCCCCEEEecCCCCCCCcc
Q 002315 260 LEGLDISYNIISTFSELEFLASLPYLLNLWLEGNPLCCSRW 300 (937)
Q Consensus 260 L~~LdLS~N~Ls~l~~l~~L~~L~sL~~L~Ls~NpLt~~~~ 300 (937)
|++|+|++|+|+.++. ..+..+++|+.|+|++|++.|.+.
T Consensus 373 L~~L~L~~N~l~~~~~-~~~~~l~~L~~L~l~~N~l~~~~~ 412 (455)
T 3v47_A 373 LKELALDTNQLKSVPD-GIFDRLTSLQKIWLHTNPWDCSCP 412 (455)
T ss_dssp CCEEECCSSCCSCCCT-TTTTTCTTCCEEECCSSCBCCCTT
T ss_pred ccEEECCCCccccCCH-hHhccCCcccEEEccCCCcccCCC
Confidence 9999999999999875 567899999999999999999874
No 23
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.88 E-value=8.3e-22 Score=232.26 Aligned_cols=270 Identities=18% Similarity=0.161 Sum_probs=152.7
Q ss_pred hcCCcEEEecCCCccch-HhhhhhcccchhccCCC-CCcc---------cccccccCCCCCcchHHHHHhcCCCCCcEEE
Q 002315 25 IEGSIVLKLNPAGLHYV-QSRLEALRELERLLAGA-PLDY---------LRAYVSDLGDHRALEQLRRILKLLTSLKVVS 93 (937)
Q Consensus 25 L~~l~~L~L~~~~L~~L-p~~L~~L~~Le~L~~g~-~L~~---------L~l~vLdLs~n~~le~Lp~~L~~L~~Lk~Ld 93 (937)
+..++.|++..+.+..+ |..+..+.+|+.|.... .+.. -.+..+++++|......+..+.++++|++|+
T Consensus 56 l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~ 135 (606)
T 3t6q_A 56 LINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLY 135 (606)
T ss_dssp CTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTCCEEECTTSCCSCGGGSCCTTCTTCCEEE
T ss_pred CccceEEECCCCccceeChhhccCccccCeeeCCCCcccccChhhhcccccccEeeccccCcccCCcchhccCCcccEEE
Confidence 34556666666665544 44455555555544321 1111 1223455555554433344566677777777
Q ss_pred ccCCCCCCCCCCCCCCCCCCcEEEeeCCCCCccchhhHhhhhhhh--hhhhccCCCcccchhccc---------------
Q 002315 94 ALPPPARDPTPLSLLPFCRLKVLELRGCDLSTSAAKGLLELRHTL--EKIICHNSTNALRHVFAS--------------- 156 (937)
Q Consensus 94 Ls~N~Is~~iP~sLs~L~~L~~LdLS~N~Ls~~lp~~L~~L~~Ll--~LlL~~N~L~~L~~l~~~--------------- 156 (937)
|++|.+.+..+..+..+++|++|+|++|.+++..|..+..++++. .+.+.+|.+..+....+.
T Consensus 136 L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~L~l~~n~l~~~~~~~~~~~~L~~L~l~~~~~~ 215 (606)
T 3t6q_A 136 LGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNL 215 (606)
T ss_dssp CCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEECHHHHHTTTTCCSEEEECTTCCCCEECTTTTTTCEEEEEECTTCSCH
T ss_pred CCCCcccccCcccccCCcccCEEEcccCcccccChhhhhhhcccceeEEecCCCccCccChhHhhhccccccccCCchhH
Confidence 777777664444455577777777777777776677777777766 566667765543321110
Q ss_pred -------------------------------------------------chhccc--CCCCCCCccEEEccCCcCccchh
Q 002315 157 -------------------------------------------------RIVEIK--DSPQWNRLSFVSCSCNRLVIMDE 185 (937)
Q Consensus 157 -------------------------------------------------~i~~l~--~l~~l~~L~~L~Ls~N~Ls~LP~ 185 (937)
.+..+. .+..+++|+.|++++|.++.+|.
T Consensus 216 ~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~lp~ 295 (606)
T 3t6q_A 216 LVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLSELPS 295 (606)
T ss_dssp HHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTSCCSCCCS
T ss_pred HHHhhhccccchhheechhhccccccccChhHhchhhcCceeEEEeecCccCccCHHHhccccCCCEEeccCCccCCCCh
Confidence 011111 14456788888888888888888
Q ss_pred hcCCCCCCcEEECCCCCCCCCc--CcCCCCCCCEEECCCCCCC-Cccc-ccccccccceecccCccccccc----cCCCC
Q 002315 186 SLQLLPAVETLDLSRNKFAKVD--NLRKCVNLKHLDLGFNNLR-SIAA-FSEVSCHIVKLVLRNNALTTLR----GIENL 257 (937)
Q Consensus 186 sL~~L~~L~~LdLs~N~L~~l~--~L~~L~~L~~LdLS~N~Lt-~L~~-l~~~l~sL~~L~Ls~N~Lt~Lp----~L~~L 257 (937)
.+..+++|++|++++|.+..++ .+..+++|+.|+|++|.+. .++. ....+++|+.|+|++|.++.+. .+..+
T Consensus 296 ~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l 375 (606)
T 3t6q_A 296 GLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNL 375 (606)
T ss_dssp SCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTC
T ss_pred hhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhhhccCcCCEEECCCCccccccCcchhcccC
Confidence 8888888888888888887652 4556666666666666554 2222 2333455555555555554431 34445
Q ss_pred CCCCEEEccCCCCCCCchhhhhcCCCCCCEEEecCCCC
Q 002315 258 KSLEGLDISYNIISTFSELEFLASLPYLLNLWLEGNPL 295 (937)
Q Consensus 258 ~sL~~LdLS~N~Ls~l~~l~~L~~L~sL~~L~Ls~NpL 295 (937)
++|++|+|++|.+..+++ ..+..+++|+.|+|++|.+
T Consensus 376 ~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~l~~n~l 412 (606)
T 3t6q_A 376 SHLQSLNLSYNEPLSLKT-EAFKECPQLELLDLAFTRL 412 (606)
T ss_dssp TTCCEEECCSCSCEEECT-TTTTTCTTCSEEECTTCCE
T ss_pred CCCCEEECCCCcCCcCCH-HHhcCCccCCeEECCCCcC
Confidence 555555555554444322 2333444444444444443
No 24
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.88 E-value=1.2e-22 Score=243.25 Aligned_cols=275 Identities=16% Similarity=0.189 Sum_probs=173.9
Q ss_pred hcCCcEEEecCCCccc------------------hHhhhh--hcccchhccCCCC---------C-cccccccccCCCCC
Q 002315 25 IEGSIVLKLNPAGLHY------------------VQSRLE--ALRELERLLAGAP---------L-DYLRAYVSDLGDHR 74 (937)
Q Consensus 25 L~~l~~L~L~~~~L~~------------------Lp~~L~--~L~~Le~L~~g~~---------L-~~L~l~vLdLs~n~ 74 (937)
+..++.|++..+.+.. +|..+. .+++|+.|....+ + ..-.+..+++++|.
T Consensus 205 l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~ 284 (636)
T 4eco_A 205 LTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNR 284 (636)
T ss_dssp CTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCT
T ss_pred ccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCC
Confidence 5678999999999988 898888 8888877654221 1 11235578899988
Q ss_pred -cch-HHHHHhcCC------CCCcEEEccCCCCCCCCCC--CCCCCCCCcEEEeeCCCCCccchhhHhhhhhhhhhhhcc
Q 002315 75 -ALE-QLRRILKLL------TSLKVVSALPPPARDPTPL--SLLPFCRLKVLELRGCDLSTSAAKGLLELRHTLEKIICH 144 (937)
Q Consensus 75 -~le-~Lp~~L~~L------~~Lk~LdLs~N~Is~~iP~--sLs~L~~L~~LdLS~N~Ls~~lp~~L~~L~~Ll~LlL~~ 144 (937)
..+ .+|..+..+ ++|+.|+|++|.++ .+|. .|+.+++|++|+|++|.+++.+| .+..+++|..+.+.+
T Consensus 285 ~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~ 362 (636)
T 4eco_A 285 GISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAY 362 (636)
T ss_dssp TSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEEEESEEECCS
T ss_pred CCccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCchhhhccCCCCCEEeCcCCcCccchh-hhCCCCCCCEEECCC
Confidence 666 799888876 99999999999998 7788 89999999999999999997788 888999999999999
Q ss_pred CCCcccchhcccchhcccCCCCCCC-ccEEEccCCcCccchhhcCCCC--CCcEEECCCCCCCCC--cCcC-------CC
Q 002315 145 NSTNALRHVFASRIVEIKDSPQWNR-LSFVSCSCNRLVIMDESLQLLP--AVETLDLSRNKFAKV--DNLR-------KC 212 (937)
Q Consensus 145 N~L~~L~~l~~~~i~~l~~l~~l~~-L~~L~Ls~N~Ls~LP~sL~~L~--~L~~LdLs~N~L~~l--~~L~-------~L 212 (937)
|.+..++..+. .+++ |+.|++++|.++.+|..+..+. +|+.|++++|.+.+. ..+. .+
T Consensus 363 N~l~~lp~~l~----------~l~~~L~~L~Ls~N~l~~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~ 432 (636)
T 4eco_A 363 NQITEIPANFC----------GFTEQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKG 432 (636)
T ss_dssp SEEEECCTTSE----------EECTTCCEEECCSSCCSSCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCC
T ss_pred CccccccHhhh----------hhcccCcEEEccCCcCcccchhhhhcccCccCEEECcCCcCCCcchhhhcccccccccC
Confidence 98775554321 2344 6666666666665555544433 555556655555542 1233 44
Q ss_pred CCCCEEECCCCCCCCccccc-ccccccceecccCccccccc--cCC-------CCCCCCEEEccCCCCCCCchhhhhc--
Q 002315 213 VNLKHLDLGFNNLRSIAAFS-EVSCHIVKLVLRNNALTTLR--GIE-------NLKSLEGLDISYNIISTFSELEFLA-- 280 (937)
Q Consensus 213 ~~L~~LdLS~N~Lt~L~~l~-~~l~sL~~L~Ls~N~Lt~Lp--~L~-------~L~sL~~LdLS~N~Ls~l~~l~~L~-- 280 (937)
++|+.|+|++|.|+.++... ..+++|+.|+|++|+|+.+| .+. .+++|+.|+|++|.|+.+| ..+.
T Consensus 433 ~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~lp--~~~~~~ 510 (636)
T 4eco_A 433 INVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTKLS--DDFRAT 510 (636)
T ss_dssp CCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCSBCCSSSSEETTEECTTGGGCCEEECCSSCCCBCC--GGGSTT
T ss_pred CCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCCCcCHHHhccccccccccCCccEEECcCCcCCccC--hhhhhc
Confidence 45555555555555554422 22445555555555555443 111 1125555555555555444 2232
Q ss_pred CCCCCCEEEecCCCCCCCcchhhhHhhhcCCCceecc
Q 002315 281 SLPYLLNLWLEGNPLCCSRWYRAQVFSYFAHPAKLKV 317 (937)
Q Consensus 281 ~L~sL~~L~Ls~NpLt~~~~~r~~~~~~l~~L~~L~L 317 (937)
.+++|+.|+|++|+++..+ ..+..++.|+.|+|
T Consensus 511 ~l~~L~~L~Ls~N~l~~ip----~~~~~l~~L~~L~L 543 (636)
T 4eco_A 511 TLPYLVGIDLSYNSFSKFP----TQPLNSSTLKGFGI 543 (636)
T ss_dssp TCTTCCEEECCSSCCSSCC----CGGGGCSSCCEEEC
T ss_pred cCCCcCEEECCCCCCCCcC----hhhhcCCCCCEEEC
Confidence 4555555555555554322 12333445555555
No 25
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.88 E-value=6.3e-22 Score=227.36 Aligned_cols=270 Identities=23% Similarity=0.265 Sum_probs=174.7
Q ss_pred hcCCcEEEecCCCccchHhhhhhcccchhccCCCCCcccccccccCCCCCcchHHHHHhcCCCCCcEEEccCCCCCCCCC
Q 002315 25 IEGSIVLKLNPAGLHYVQSRLEALRELERLLAGAPLDYLRAYVSDLGDHRALEQLRRILKLLTSLKVVSALPPPARDPTP 104 (937)
Q Consensus 25 L~~l~~L~L~~~~L~~Lp~~L~~L~~Le~L~~g~~L~~L~l~vLdLs~n~~le~Lp~~L~~L~~Lk~LdLs~N~Is~~iP 104 (937)
+...+.|.+....+..+|. +..++.|+. +++++|... .++. +..+++|++|+|++|.+.+..+
T Consensus 45 l~~l~~L~l~~~~i~~l~~-~~~l~~L~~--------------L~Ls~n~l~-~~~~-~~~l~~L~~L~l~~n~l~~~~~ 107 (466)
T 1o6v_A 45 LDQVTTLQADRLGIKSIDG-VEYLNNLTQ--------------INFSNNQLT-DITP-LKNLTKLVDILMNNNQIADITP 107 (466)
T ss_dssp HHTCCEEECCSSCCCCCTT-GGGCTTCCE--------------EECCSSCCC-CCGG-GTTCTTCCEEECCSSCCCCCGG
T ss_pred hccccEEecCCCCCccCcc-hhhhcCCCE--------------EECCCCccC-Cchh-hhccccCCEEECCCCccccChh
Confidence 4678899999988888773 555554443 344444322 2333 6677777777777777766543
Q ss_pred CCCCCCCCCcEEEeeCCCCCccchhhHhhhhhhhhhhhccCCCcccchhc----------ccchhcccCCCCCCCccEEE
Q 002315 105 LSLLPFCRLKVLELRGCDLSTSAAKGLLELRHTLEKIICHNSTNALRHVF----------ASRIVEIKDSPQWNRLSFVS 174 (937)
Q Consensus 105 ~sLs~L~~L~~LdLS~N~Ls~~lp~~L~~L~~Ll~LlL~~N~L~~L~~l~----------~~~i~~l~~l~~l~~L~~L~ 174 (937)
+..+++|++|+|++|.+++..+ +..+++|.++.+.+|.+..++.+. .+.+..+..+..+++|+.|+
T Consensus 108 --~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~L~~L~ 183 (466)
T 1o6v_A 108 --LANLTNLTGLTLFNNQITDIDP--LKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLD 183 (466)
T ss_dssp --GTTCTTCCEEECCSSCCCCCGG--GTTCTTCSEEEEEEEEECCCGGGTTCTTCSEEEEEESCCCCGGGTTCTTCCEEE
T ss_pred --hcCCCCCCEEECCCCCCCCChH--HcCCCCCCEEECCCCccCCChhhccCCcccEeecCCcccCchhhccCCCCCEEE
Confidence 6777777777777777766432 666777777777766655443210 01111222244667778888
Q ss_pred ccCCcCccchhhcCCCCCCcEEECCCCCCCCCcCcCCCCCCCEEECCCCCCCCcccccccccccceecccCccccccccC
Q 002315 175 CSCNRLVIMDESLQLLPAVETLDLSRNKFAKVDNLRKCVNLKHLDLGFNNLRSIAAFSEVSCHIVKLVLRNNALTTLRGI 254 (937)
Q Consensus 175 Ls~N~Ls~LP~sL~~L~~L~~LdLs~N~L~~l~~L~~L~~L~~LdLS~N~Lt~L~~l~~~l~sL~~L~Ls~N~Lt~Lp~L 254 (937)
+++|.+..++ .+..+++|++|++++|.+..++.+..+++|+.|+|++|.++.++. ...+++|+.|++++|.++.++.+
T Consensus 184 l~~n~l~~~~-~l~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~~~~ 261 (466)
T 1o6v_A 184 ISSNKVSDIS-VLAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGT-LASLTNLTDLDLANNQISNLAPL 261 (466)
T ss_dssp CCSSCCCCCG-GGGGCTTCSEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCCCGG-GGGCTTCSEEECCSSCCCCCGGG
T ss_pred CcCCcCCCCh-hhccCCCCCEEEecCCcccccccccccCCCCEEECCCCCcccchh-hhcCCCCCEEECCCCccccchhh
Confidence 8888777664 466777777777777777776556667777777777777776643 23456777777777777776666
Q ss_pred CCCCCCCEEEccCCCCCCCchhhhhcCCCCCCEEEecCCCCCCCcchhhhHhhhcCCCceeccCCccCChh
Q 002315 255 ENLKSLEGLDISYNIISTFSELEFLASLPYLLNLWLEGNPLCCSRWYRAQVFSYFAHPAKLKVDGKEISTR 325 (937)
Q Consensus 255 ~~L~sL~~LdLS~N~Ls~l~~l~~L~~L~sL~~L~Ls~NpLt~~~~~r~~~~~~l~~L~~L~LdgN~Is~~ 325 (937)
..+++|+.|+|++|.+..++. +..+++|+.|+|++|.+...+. +..++.|+.|+|++|.++..
T Consensus 262 ~~l~~L~~L~l~~n~l~~~~~---~~~l~~L~~L~L~~n~l~~~~~-----~~~l~~L~~L~L~~n~l~~~ 324 (466)
T 1o6v_A 262 SGLTKLTELKLGANQISNISP---LAGLTALTNLELNENQLEDISP-----ISNLKNLTYLTLYFNNISDI 324 (466)
T ss_dssp TTCTTCSEEECCSSCCCCCGG---GTTCTTCSEEECCSSCCSCCGG-----GGGCTTCSEEECCSSCCSCC
T ss_pred hcCCCCCEEECCCCccCcccc---ccCCCccCeEEcCCCcccCchh-----hcCCCCCCEEECcCCcCCCc
Confidence 777777777777777776653 5666777777777777664431 44566677777777766643
No 26
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.88 E-value=6.5e-23 Score=224.17 Aligned_cols=236 Identities=17% Similarity=0.180 Sum_probs=196.0
Q ss_pred ccCCCCCcchHHHHHhcCCCCCcEEEccCCCCCCCCCCCCCCCCCCcEEEeeCCCCCccchhhHhhhhhhhhhhhccCCC
Q 002315 68 SDLGDHRALEQLRRILKLLTSLKVVSALPPPARDPTPLSLLPFCRLKVLELRGCDLSTSAAKGLLELRHTLEKIICHNST 147 (937)
Q Consensus 68 LdLs~n~~le~Lp~~L~~L~~Lk~LdLs~N~Is~~iP~sLs~L~~L~~LdLS~N~Ls~~lp~~L~~L~~Ll~LlL~~N~L 147 (937)
.+++.+.....+...+..+++|+.|+|++|.+.+..|..|..+++|++|+|++|.+++..+ +..+++|..+.+.+|.+
T Consensus 15 ~~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n~l 92 (317)
T 3o53_A 15 EKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYV 92 (317)
T ss_dssp ESCCTTTHHHHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECCSSEE
T ss_pred eeccccchhhhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECcCCcc
Confidence 4566666555566677788899999999999998888889999999999999999987554 88888999999998876
Q ss_pred cccchhcccchhcccCCCCCCCccEEEccCCcCccchhhcCCCCCCcEEECCCCCCCCCc--CcCCCCCCCEEECCCCCC
Q 002315 148 NALRHVFASRIVEIKDSPQWNRLSFVSCSCNRLVIMDESLQLLPAVETLDLSRNKFAKVD--NLRKCVNLKHLDLGFNNL 225 (937)
Q Consensus 148 ~~L~~l~~~~i~~l~~l~~l~~L~~L~Ls~N~Ls~LP~sL~~L~~L~~LdLs~N~L~~l~--~L~~L~~L~~LdLS~N~L 225 (937)
..++ ..++|+.|++++|.|+.++.. .+++|++|++++|.++.++ .+..+++|++|+|++|.|
T Consensus 93 ~~l~--------------~~~~L~~L~l~~n~l~~~~~~--~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l 156 (317)
T 3o53_A 93 QELL--------------VGPSIETLHAANNNISRVSCS--RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEI 156 (317)
T ss_dssp EEEE--------------ECTTCCEEECCSSCCSEEEEC--CCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCC
T ss_pred cccc--------------CCCCcCEEECCCCccCCcCcc--ccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCC
Confidence 5544 236899999999999977643 4788999999999999874 677889999999999999
Q ss_pred CCccc--ccccccccceecccCccccccccCCCCCCCCEEEccCCCCCCCchhhhhcCCCCCCEEEecCCCCCCCcchhh
Q 002315 226 RSIAA--FSEVSCHIVKLVLRNNALTTLRGIENLKSLEGLDISYNIISTFSELEFLASLPYLLNLWLEGNPLCCSRWYRA 303 (937)
Q Consensus 226 t~L~~--l~~~l~sL~~L~Ls~N~Lt~Lp~L~~L~sL~~LdLS~N~Ls~l~~l~~L~~L~sL~~L~Ls~NpLt~~~~~r~ 303 (937)
+.++. +...+++|+.|+|++|.|+.++....+++|+.|+|++|.|+.++. .+..+++|+.|+|++|+++..+
T Consensus 157 ~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~l~~L~~L~Ls~N~l~~l~~--~~~~l~~L~~L~L~~N~l~~l~---- 230 (317)
T 3o53_A 157 DTVNFAELAASSDTLEHLNLQYNFIYDVKGQVVFAKLKTLDLSSNKLAFMGP--EFQSAAGVTWISLRNNKLVLIE---- 230 (317)
T ss_dssp CEEEGGGGGGGTTTCCEEECTTSCCCEEECCCCCTTCCEEECCSSCCCEECG--GGGGGTTCSEEECTTSCCCEEC----
T ss_pred CcccHHHHhhccCcCCEEECCCCcCcccccccccccCCEEECCCCcCCcchh--hhcccCcccEEECcCCcccchh----
Confidence 98654 233568999999999999999877779999999999999998874 4788999999999999998544
Q ss_pred hHhhhcCCCceeccCCccCChhhH
Q 002315 304 QVFSYFAHPAKLKVDGKEISTREL 327 (937)
Q Consensus 304 ~~~~~l~~L~~L~LdgN~Is~~e~ 327 (937)
..+..++.|+.++|++|++.+...
T Consensus 231 ~~~~~l~~L~~L~l~~N~~~~~~~ 254 (317)
T 3o53_A 231 KALRFSQNLEHFDLRGNGFHCGTL 254 (317)
T ss_dssp TTCCCCTTCCEEECTTCCCBHHHH
T ss_pred hHhhcCCCCCEEEccCCCccCcCH
Confidence 335678899999999999996543
No 27
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.88 E-value=4.9e-22 Score=222.39 Aligned_cols=202 Identities=18% Similarity=0.218 Sum_probs=103.7
Q ss_pred HhcCCCCCcEEEccCCCCCCCCCCCCCCCCCCcEEEeeCCCCCccchhhHhhhhhhhhhhhccCCCcccchhcccchhcc
Q 002315 82 ILKLLTSLKVVSALPPPARDPTPLSLLPFCRLKVLELRGCDLSTSAAKGLLELRHTLEKIICHNSTNALRHVFASRIVEI 161 (937)
Q Consensus 82 ~L~~L~~Lk~LdLs~N~Is~~iP~sLs~L~~L~~LdLS~N~Ls~~lp~~L~~L~~Ll~LlL~~N~L~~L~~l~~~~i~~l 161 (937)
.+..+++|+.|+|++|.+....+..|..+++|++|+|++|.+++..|..|..+++|..+.+.+|.+..++...+
T Consensus 64 ~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~------ 137 (390)
T 3o6n_A 64 LLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIF------ 137 (390)
T ss_dssp HHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTT------
T ss_pred HhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEECCCCccCcCCHHHh------
Confidence 35666666666666666666555566666666666666666666555566666666666666665554443221
Q ss_pred cCCCCCCCccEEEccCCcCccchh-hcCCCCCCcEEECCCCCCCCCcCcCCCC-------------------CCCEEECC
Q 002315 162 KDSPQWNRLSFVSCSCNRLVIMDE-SLQLLPAVETLDLSRNKFAKVDNLRKCV-------------------NLKHLDLG 221 (937)
Q Consensus 162 ~~l~~l~~L~~L~Ls~N~Ls~LP~-sL~~L~~L~~LdLs~N~L~~l~~L~~L~-------------------~L~~LdLS 221 (937)
..+++|++|++++|.+..++. .+..+++|++|++++|.++.++ +..++ +|+.|+++
T Consensus 138 ---~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~L~~L~l~ 213 (390)
T 3o6n_A 138 ---HNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD-LSLIPSLFHANVSYNLLSTLAIPIAVEELDAS 213 (390)
T ss_dssp ---TTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBCC-GGGCTTCSEEECCSSCCSEEECCSSCSEEECC
T ss_pred ---cCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCccc-cccccccceeecccccccccCCCCcceEEECC
Confidence 234556666666666654432 4555666666666666555432 12222 23333333
Q ss_pred CCCCCCcccccccccccceecccCccccccccCCCCCCCCEEEccCCCCCCCchhhhhcCCCCCCEEEecCCCCC
Q 002315 222 FNNLRSIAAFSEVSCHIVKLVLRNNALTTLRGIENLKSLEGLDISYNIISTFSELEFLASLPYLLNLWLEGNPLC 296 (937)
Q Consensus 222 ~N~Lt~L~~l~~~l~sL~~L~Ls~N~Lt~Lp~L~~L~sL~~LdLS~N~Ls~l~~l~~L~~L~sL~~L~Ls~NpLt 296 (937)
+|.+..++.. .+++|+.|+|++|.++.++.+..+++|+.|+|++|.|..+++ ..+..+++|+.|+|++|.+.
T Consensus 214 ~n~l~~~~~~--~~~~L~~L~l~~n~l~~~~~l~~l~~L~~L~Ls~n~l~~~~~-~~~~~l~~L~~L~L~~n~l~ 285 (390)
T 3o6n_A 214 HNSINVVRGP--VNVELTILKLQHNNLTDTAWLLNYPGLVEVDLSYNELEKIMY-HPFVKMQRLERLYISNNRLV 285 (390)
T ss_dssp SSCCCEEECC--CCSSCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCEEES-GGGTTCSSCCEEECCSSCCC
T ss_pred CCeeeecccc--ccccccEEECCCCCCcccHHHcCCCCccEEECCCCcCCCcCh-hHccccccCCEEECCCCcCc
Confidence 3333332211 123444444444444444444444444444444444444322 33444444444444444443
No 28
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.88 E-value=3e-22 Score=219.52 Aligned_cols=262 Identities=17% Similarity=0.155 Sum_probs=189.8
Q ss_pred CcEEEecCCCccchHhhhhhcccchhccCCCCCcccccccccCCCCCcchHHHHHhcCCCCCcEEEccCCCCCCCCCCCC
Q 002315 28 SIVLKLNPAGLHYVQSRLEALRELERLLAGAPLDYLRAYVSDLGDHRALEQLRRILKLLTSLKVVSALPPPARDPTPLSL 107 (937)
Q Consensus 28 l~~L~L~~~~L~~Lp~~L~~L~~Le~L~~g~~L~~L~l~vLdLs~n~~le~Lp~~L~~L~~Lk~LdLs~N~Is~~iP~sL 107 (937)
.+.+++....+..+|..+. +. +..+++++|......+..|.++++|++|+|++|.++...|..|
T Consensus 35 l~~l~~~~~~l~~ip~~~~--~~--------------l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~ 98 (332)
T 2ft3_A 35 LRVVQCSDLGLKAVPKEIS--PD--------------TTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAF 98 (332)
T ss_dssp TTEEECCSSCCSSCCSCCC--TT--------------CCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGS
T ss_pred CCEEECCCCCccccCCCCC--CC--------------CeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHh
Confidence 5788888888888775432 11 2335666666544445678889999999999999988888889
Q ss_pred CCCCCCcEEEeeCCCCCccchhhHhhhhhhhhhhhccCCCcccchhcccchhcccCCCCCCCccEEEccCCcCc---cch
Q 002315 108 LPFCRLKVLELRGCDLSTSAAKGLLELRHTLEKIICHNSTNALRHVFASRIVEIKDSPQWNRLSFVSCSCNRLV---IMD 184 (937)
Q Consensus 108 s~L~~L~~LdLS~N~Ls~~lp~~L~~L~~Ll~LlL~~N~L~~L~~l~~~~i~~l~~l~~l~~L~~L~Ls~N~Ls---~LP 184 (937)
..+++|++|+|++|.++. +|..+. ++|.++.+.+|.+..++...+ ..+++|+.|++++|.++ ..|
T Consensus 99 ~~l~~L~~L~L~~n~l~~-l~~~~~--~~L~~L~l~~n~i~~~~~~~~---------~~l~~L~~L~l~~n~l~~~~~~~ 166 (332)
T 2ft3_A 99 SPLRKLQKLYISKNHLVE-IPPNLP--SSLVELRIHDNRIRKVPKGVF---------SGLRNMNCIEMGGNPLENSGFEP 166 (332)
T ss_dssp TTCTTCCEEECCSSCCCS-CCSSCC--TTCCEEECCSSCCCCCCSGGG---------SSCSSCCEEECCSCCCBGGGSCT
T ss_pred hCcCCCCEEECCCCcCCc-cCcccc--ccCCEEECCCCccCccCHhHh---------CCCccCCEEECCCCccccCCCCc
Confidence 999999999999999875 454443 677788888887766554321 35678888888888886 334
Q ss_pred hhcCCCCCCcEEECCCCCCCCCcCcCCCCCCCEEECCCCCCCCccc-ccccccccceecccCccccccc--cCCCCCCCC
Q 002315 185 ESLQLLPAVETLDLSRNKFAKVDNLRKCVNLKHLDLGFNNLRSIAA-FSEVSCHIVKLVLRNNALTTLR--GIENLKSLE 261 (937)
Q Consensus 185 ~sL~~L~~L~~LdLs~N~L~~l~~L~~L~~L~~LdLS~N~Lt~L~~-l~~~l~sL~~L~Ls~N~Lt~Lp--~L~~L~sL~ 261 (937)
..+..+ +|+.|++++|.++.++.-. .++|+.|+|++|.++.++. .+..+++|+.|+|++|.|+.++ .+..+++|+
T Consensus 167 ~~~~~l-~L~~L~l~~n~l~~l~~~~-~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~ 244 (332)
T 2ft3_A 167 GAFDGL-KLNYLRISEAKLTGIPKDL-PETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLR 244 (332)
T ss_dssp TSSCSC-CCSCCBCCSSBCSSCCSSS-CSSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCC
T ss_pred ccccCC-ccCEEECcCCCCCccCccc-cCCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCC
Confidence 566666 8888888888888775311 2678888888888887763 4456678888888888888864 577888888
Q ss_pred EEEccCCCCCCCchhhhhcCCCCCCEEEecCCCCCCCcchhhhHhh------hcCCCceeccCCccCCh
Q 002315 262 GLDISYNIISTFSELEFLASLPYLLNLWLEGNPLCCSRWYRAQVFS------YFAHPAKLKVDGKEIST 324 (937)
Q Consensus 262 ~LdLS~N~Ls~l~~l~~L~~L~sL~~L~Ls~NpLt~~~~~r~~~~~------~l~~L~~L~LdgN~Is~ 324 (937)
.|+|++|.|+.+| ..+..+++|+.|+|++|+++..+. ..+. .+..++.+.|.+|++..
T Consensus 245 ~L~L~~N~l~~lp--~~l~~l~~L~~L~l~~N~l~~~~~---~~~~~~~~~~~~~~l~~L~l~~N~~~~ 308 (332)
T 2ft3_A 245 ELHLDNNKLSRVP--AGLPDLKLLQVVYLHTNNITKVGV---NDFCPVGFGVKRAYYNGISLFNNPVPY 308 (332)
T ss_dssp EEECCSSCCCBCC--TTGGGCTTCCEEECCSSCCCBCCT---TSSSCSSCCSSSCCBSEEECCSSSSCG
T ss_pred EEECCCCcCeecC--hhhhcCccCCEEECCCCCCCccCh---hHccccccccccccccceEeecCcccc
Confidence 8888888888776 457778888888888888875532 1111 13557778888888764
No 29
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.87 E-value=2.9e-22 Score=214.73 Aligned_cols=205 Identities=20% Similarity=0.167 Sum_probs=134.4
Q ss_pred CCCCcEEEccCCCCCCCCCCCCCCCCCCcEEEeeCCCCCccchhhHhhhhhhhhhhhccCC-CcccchhcccchhcccCC
Q 002315 86 LTSLKVVSALPPPARDPTPLSLLPFCRLKVLELRGCDLSTSAAKGLLELRHTLEKIICHNS-TNALRHVFASRIVEIKDS 164 (937)
Q Consensus 86 L~~Lk~LdLs~N~Is~~iP~sLs~L~~L~~LdLS~N~Ls~~lp~~L~~L~~Ll~LlL~~N~-L~~L~~l~~~~i~~l~~l 164 (937)
.++|+.|+|++|.++...+..|..+++|++|+|++|.+++..|..|..+++|.++.+.+|. +..+... .+
T Consensus 31 ~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~---------~~ 101 (285)
T 1ozn_A 31 PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPA---------TF 101 (285)
T ss_dssp CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTT---------TT
T ss_pred CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHH---------Hh
Confidence 4577888888888877766777788888888888888877666666666655555555553 3333211 11
Q ss_pred CCCCCccEEEccCCcCccc-hhhcCCCCCCcEEECCCCCCCCCc--CcCCCCCCCEEECCCCCCCCccc-ccccccccce
Q 002315 165 PQWNRLSFVSCSCNRLVIM-DESLQLLPAVETLDLSRNKFAKVD--NLRKCVNLKHLDLGFNNLRSIAA-FSEVSCHIVK 240 (937)
Q Consensus 165 ~~l~~L~~L~Ls~N~Ls~L-P~sL~~L~~L~~LdLs~N~L~~l~--~L~~L~~L~~LdLS~N~Lt~L~~-l~~~l~sL~~ 240 (937)
..+++|++|++++|.++.+ |..+..+++|++|+|++|.++.++ .|..+++|+.|+|++|.|+.++. .+..+++|+.
T Consensus 102 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~ 181 (285)
T 1ozn_A 102 HGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDR 181 (285)
T ss_dssp TTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCE
T ss_pred cCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCHHHhcCccccCE
Confidence 2445677777777777655 345666777777777777776654 36667777777777777766654 2444567777
Q ss_pred ecccCcccccc-c-cCCCCCCCCEEEccCCCCCCCchhhhhcCCCCCCEEEecCCCCCCCcc
Q 002315 241 LVLRNNALTTL-R-GIENLKSLEGLDISYNIISTFSELEFLASLPYLLNLWLEGNPLCCSRW 300 (937)
Q Consensus 241 L~Ls~N~Lt~L-p-~L~~L~sL~~LdLS~N~Ls~l~~l~~L~~L~sL~~L~Ls~NpLt~~~~ 300 (937)
|+|++|.|+.+ + .+..+++|+.|+|++|.|+.++. ..+..+++|+.|+|++|++.|.+.
T Consensus 182 L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~l~~N~~~c~~~ 242 (285)
T 1ozn_A 182 LLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPT-EALAPLRALQYLRLNDNPWVCDCR 242 (285)
T ss_dssp EECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCH-HHHTTCTTCCEEECCSSCEECSGG
T ss_pred EECCCCcccccCHhHccCcccccEeeCCCCcCCcCCH-HHcccCcccCEEeccCCCccCCCC
Confidence 77777777665 2 56666777777777777776653 456667777777777777766653
No 30
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.87 E-value=3.6e-22 Score=235.36 Aligned_cols=294 Identities=16% Similarity=0.091 Sum_probs=163.8
Q ss_pred cCCcEEEecCCCccchHh-hhhhcccchhccCCC-CCc---------ccccccccCCCCCcchHHHHHhcCCCCCcEEEc
Q 002315 26 EGSIVLKLNPAGLHYVQS-RLEALRELERLLAGA-PLD---------YLRAYVSDLGDHRALEQLRRILKLLTSLKVVSA 94 (937)
Q Consensus 26 ~~l~~L~L~~~~L~~Lp~-~L~~L~~Le~L~~g~-~L~---------~L~l~vLdLs~n~~le~Lp~~L~~L~~Lk~LdL 94 (937)
...+.|++..+.+..++. .+..+++|+.|.... .+. .-.+..+++++|......|..|+++++|++|+|
T Consensus 32 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L 111 (606)
T 3vq2_A 32 SSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVA 111 (606)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCEEEC
T ss_pred CCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccChhhcCCcccCCEEEc
Confidence 455666666666665543 444555554444311 111 112335566666544444666666777777777
Q ss_pred cCCCCCCCCCCCCCCCCCCcEEEeeCCCCCc-cchhhHhhhhhhhhhhhccCCCcccchhcccchhc-------------
Q 002315 95 LPPPARDPTPLSLLPFCRLKVLELRGCDLST-SAAKGLLELRHTLEKIICHNSTNALRHVFASRIVE------------- 160 (937)
Q Consensus 95 s~N~Is~~iP~sLs~L~~L~~LdLS~N~Ls~-~lp~~L~~L~~Ll~LlL~~N~L~~L~~l~~~~i~~------------- 160 (937)
++|.+....|..|+.+++|++|+|++|.+++ .+|..+..+++|..+.+.+|.+..+....+..+..
T Consensus 112 ~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~~l~~L~l~~n 191 (606)
T 3vq2_A 112 VETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLN 191 (606)
T ss_dssp TTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEECTTTTHHHHHCTTCCCEEECTTC
T ss_pred cCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcceecChhhhhhhhccccccceeeccCC
Confidence 6666666655666666666666666666654 34666666666666666665544332110000000
Q ss_pred --------------------------------------------------------------------------------
Q 002315 161 -------------------------------------------------------------------------------- 160 (937)
Q Consensus 161 -------------------------------------------------------------------------------- 160 (937)
T Consensus 192 ~l~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~ 271 (606)
T 3vq2_A 192 PIDFIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYT 271 (606)
T ss_dssp CCCEECTTTTTTCEEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCGGGGTTGGGSEEEEEEECCC
T ss_pred CcceeCcccccCceeeeeeccCCccchhHHHHHhccccccccccccccccccCCcccccChHHhhhhhhccHhheecccc
Confidence
Q ss_pred ------ccCCCCCCCccEEEccCCcCccchhhcCCCCCCcEEECCCCCCCCCc---------------------CcCCCC
Q 002315 161 ------IKDSPQWNRLSFVSCSCNRLVIMDESLQLLPAVETLDLSRNKFAKVD---------------------NLRKCV 213 (937)
Q Consensus 161 ------l~~l~~l~~L~~L~Ls~N~Ls~LP~sL~~L~~L~~LdLs~N~L~~l~---------------------~L~~L~ 213 (937)
++.+..+++|+.|++++|.+..+| .+..+++|+.|++++|.+..++ .+..++
T Consensus 272 ~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~-~l~~~~~L~~L~l~~n~l~~lp~~~l~~L~~L~l~~n~~~~~~~~~~l~ 350 (606)
T 3vq2_A 272 NDFSDDIVKFHCLANVSAMSLAGVSIKYLE-DVPKHFKWQSLSIIRCQLKQFPTLDLPFLKSLTLTMNKGSISFKKVALP 350 (606)
T ss_dssp TTCCGGGGSCGGGTTCSEEEEESCCCCCCC-CCCTTCCCSEEEEESCCCSSCCCCCCSSCCEEEEESCSSCEECCCCCCT
T ss_pred ccccccccccccCCCCCEEEecCccchhhh-hccccccCCEEEcccccCcccccCCCCccceeeccCCcCccchhhccCC
Confidence 000112334444444444444444 4444555555555555554433 344555
Q ss_pred CCCEEECCCCCCCCc---ccccccccccceecccCccccccc-cCCCCCCCCEEEccCCCCCCCchhhhhcCCCCCCEEE
Q 002315 214 NLKHLDLGFNNLRSI---AAFSEVSCHIVKLVLRNNALTTLR-GIENLKSLEGLDISYNIISTFSELEFLASLPYLLNLW 289 (937)
Q Consensus 214 ~L~~LdLS~N~Lt~L---~~l~~~l~sL~~L~Ls~N~Lt~Lp-~L~~L~sL~~LdLS~N~Ls~l~~l~~L~~L~sL~~L~ 289 (937)
+|+.|+|++|.++.+ +.....+++|+.|+|++|.++.++ .+..+++|+.|+|++|.+..+++...+..+++|+.|+
T Consensus 351 ~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ 430 (606)
T 3vq2_A 351 SLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAIIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLD 430 (606)
T ss_dssp TCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEEECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEE
T ss_pred CCCEEECcCCccCCCcchhhhhccCCcccEeECCCCccccchhhccCCCCCCeeECCCCccCCccChhhhhccccCCEEE
Confidence 666666666666554 333344567777777777777665 6677777777777777777665434566777777777
Q ss_pred ecCCCCCCCcchhhhHhhhcCCCceeccCCccCC
Q 002315 290 LEGNPLCCSRWYRAQVFSYFAHPAKLKVDGKEIS 323 (937)
Q Consensus 290 Ls~NpLt~~~~~r~~~~~~l~~L~~L~LdgN~Is 323 (937)
+++|.+.... +..+..++.|+.|+|++|.++
T Consensus 431 l~~n~l~~~~---~~~~~~l~~L~~L~l~~n~l~ 461 (606)
T 3vq2_A 431 ISYTNTKIDF---DGIFLGLTSLNTLKMAGNSFK 461 (606)
T ss_dssp CTTSCCEECC---TTTTTTCTTCCEEECTTCEEG
T ss_pred CcCCCCCccc---hhhhcCCCCCCEEECCCCcCC
Confidence 7777765432 233555666777777777665
No 31
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.87 E-value=5.1e-22 Score=214.70 Aligned_cols=236 Identities=17% Similarity=0.097 Sum_probs=191.1
Q ss_pred chHHHHHhcCCCCCcEEEccCCCCCCCCCCCCCCCCCCcEEEeeCCCCCcc--chhhHhhhhhhhhhhhccCCCcccchh
Q 002315 76 LEQLRRILKLLTSLKVVSALPPPARDPTPLSLLPFCRLKVLELRGCDLSTS--AAKGLLELRHTLEKIICHNSTNALRHV 153 (937)
Q Consensus 76 le~Lp~~L~~L~~Lk~LdLs~N~Is~~iP~sLs~L~~L~~LdLS~N~Ls~~--lp~~L~~L~~Ll~LlL~~N~L~~L~~l 153 (937)
+..+|..+ .++|+.|+|++|.+....+..|..+++|++|+|++|.++.. .+..+..+++|..+.+.+|.+..++..
T Consensus 19 l~~ip~~~--~~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~l~~~ 96 (306)
T 2z66_A 19 LTSVPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSN 96 (306)
T ss_dssp CSSCCSCC--CTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCSEEEEEEE
T ss_pred cccCCCCC--CCCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCCccccChhh
Confidence 34444422 36899999999999876666688999999999999999853 367777888999999999987765543
Q ss_pred cccchhcccCCCCCCCccEEEccCCcCccchh--hcCCCCCCcEEECCCCCCCCCc--CcCCCCCCCEEECCCCCCCC--
Q 002315 154 FASRIVEIKDSPQWNRLSFVSCSCNRLVIMDE--SLQLLPAVETLDLSRNKFAKVD--NLRKCVNLKHLDLGFNNLRS-- 227 (937)
Q Consensus 154 ~~~~i~~l~~l~~l~~L~~L~Ls~N~Ls~LP~--sL~~L~~L~~LdLs~N~L~~l~--~L~~L~~L~~LdLS~N~Lt~-- 227 (937)
+ ..+++|++|++++|.++.++. .+..+++|++|++++|.+..+. .+..+++|+.|+|++|.++.
T Consensus 97 ~----------~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 166 (306)
T 2z66_A 97 F----------LGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENF 166 (306)
T ss_dssp E----------ETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGE
T ss_pred c----------CCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCcccccc
Confidence 2 256789999999999997764 7889999999999999988653 58889999999999999886
Q ss_pred cccccccccccceecccCcccccc-c-cCCCCCCCCEEEccCCCCCCCchhhhhcCCCCCCEEEecCCCCCCCcchhhhH
Q 002315 228 IAAFSEVSCHIVKLVLRNNALTTL-R-GIENLKSLEGLDISYNIISTFSELEFLASLPYLLNLWLEGNPLCCSRWYRAQV 305 (937)
Q Consensus 228 L~~l~~~l~sL~~L~Ls~N~Lt~L-p-~L~~L~sL~~LdLS~N~Ls~l~~l~~L~~L~sL~~L~Ls~NpLt~~~~~r~~~ 305 (937)
++.....+++|+.|+|++|.|+.+ + .+..+++|+.|+|++|.|+.++. ..+..+++|+.|+|++|++.... ...
T Consensus 167 ~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~-~~~~~l~~L~~L~L~~N~l~~~~---~~~ 242 (306)
T 2z66_A 167 LPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDT-FPYKCLNSLQVLDYSLNHIMTSK---KQE 242 (306)
T ss_dssp ECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCS-GGGTTCTTCCEEECTTSCCCBCS---SSS
T ss_pred chhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccCh-hhccCcccCCEeECCCCCCcccC---HHH
Confidence 566667778999999999999987 3 78889999999999999998875 45788999999999999997653 233
Q ss_pred hhhc-CCCceeccCCccCChhhH
Q 002315 306 FSYF-AHPAKLKVDGKEISTREL 327 (937)
Q Consensus 306 ~~~l-~~L~~L~LdgN~Is~~e~ 327 (937)
+..+ +.|+.++|++|++++...
T Consensus 243 ~~~~~~~L~~L~L~~N~~~~~c~ 265 (306)
T 2z66_A 243 LQHFPSSLAFLNLTQNDFACTCE 265 (306)
T ss_dssp CCCCCTTCCEEECTTCCEECSGG
T ss_pred HHhhhccCCEEEccCCCeecccC
Confidence 4455 479999999999987654
No 32
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.87 E-value=1.7e-23 Score=228.94 Aligned_cols=245 Identities=21% Similarity=0.177 Sum_probs=204.9
Q ss_pred CCcEEEecCCCcc---chHhhhhhcccchhccCCCCCcccccccccCCC-CCcchHHHHHhcCCCCCcEEEccCCCCCCC
Q 002315 27 GSIVLKLNPAGLH---YVQSRLEALRELERLLAGAPLDYLRAYVSDLGD-HRALEQLRRILKLLTSLKVVSALPPPARDP 102 (937)
Q Consensus 27 ~l~~L~L~~~~L~---~Lp~~L~~L~~Le~L~~g~~L~~L~l~vLdLs~-n~~le~Lp~~L~~L~~Lk~LdLs~N~Is~~ 102 (937)
..+.|++..+.+. .+|..+..++.|+. +++++ +...+.+|..|.++++|++|+|++|.+++.
T Consensus 51 ~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~--------------L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~ 116 (313)
T 1ogq_A 51 RVNNLDLSGLNLPKPYPIPSSLANLPYLNF--------------LYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGA 116 (313)
T ss_dssp CEEEEEEECCCCSSCEECCGGGGGCTTCSE--------------EEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEE
T ss_pred eEEEEECCCCCccCCcccChhHhCCCCCCe--------------eeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCc
Confidence 4567888888876 47777766665444 44553 566667888899999999999999999989
Q ss_pred CCCCCCCCCCCcEEEeeCCCCCccchhhHhhhhhhhhhhhccCCCc-ccchhcccchhcccCCCCCC-CccEEEccCCcC
Q 002315 103 TPLSLLPFCRLKVLELRGCDLSTSAAKGLLELRHTLEKIICHNSTN-ALRHVFASRIVEIKDSPQWN-RLSFVSCSCNRL 180 (937)
Q Consensus 103 iP~sLs~L~~L~~LdLS~N~Ls~~lp~~L~~L~~Ll~LlL~~N~L~-~L~~l~~~~i~~l~~l~~l~-~L~~L~Ls~N~L 180 (937)
+|..|..+++|++|+|++|.+++.+|..+..+++|.++.+.+|.+. .++..+ ..++ .|+.|++++|.+
T Consensus 117 ~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l----------~~l~~~L~~L~L~~N~l 186 (313)
T 1ogq_A 117 IPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSY----------GSFSKLFTSMTISRNRL 186 (313)
T ss_dssp CCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGG----------GCCCTTCCEEECCSSEE
T ss_pred CCHHHhCCCCCCEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHH----------hhhhhcCcEEECcCCee
Confidence 9999999999999999999999889999999999999999999876 343322 2344 899999999999
Q ss_pred c-cchhhcCCCCCCcEEECCCCCCCCC--cCcCCCCCCCEEECCCCCCCCcccccccccccceecccCccccc-cc-cCC
Q 002315 181 V-IMDESLQLLPAVETLDLSRNKFAKV--DNLRKCVNLKHLDLGFNNLRSIAAFSEVSCHIVKLVLRNNALTT-LR-GIE 255 (937)
Q Consensus 181 s-~LP~sL~~L~~L~~LdLs~N~L~~l--~~L~~L~~L~~LdLS~N~Lt~L~~l~~~l~sL~~L~Ls~N~Lt~-Lp-~L~ 255 (937)
. .+|..+..+. |+.|+|++|.+... ..|..+++|+.|+|++|.++..++....+++|+.|+|++|.|++ +| .+.
T Consensus 187 ~~~~~~~~~~l~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~ 265 (313)
T 1ogq_A 187 TGKIPPTFANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLT 265 (313)
T ss_dssp EEECCGGGGGCC-CSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGGGCCCCTTCCEEECCSSCCEECCCGGGG
T ss_pred eccCChHHhCCc-ccEEECcCCcccCcCCHHHhcCCCCCEEECCCCceeeecCcccccCCCCEEECcCCcccCcCChHHh
Confidence 9 7888888887 99999999999864 36889999999999999999766666677999999999999985 55 789
Q ss_pred CCCCCCEEEccCCCCCCCchhhhhcCCCCCCEEEecCCCCCCC
Q 002315 256 NLKSLEGLDISYNIISTFSELEFLASLPYLLNLWLEGNPLCCS 298 (937)
Q Consensus 256 ~L~sL~~LdLS~N~Ls~l~~l~~L~~L~sL~~L~Ls~NpLt~~ 298 (937)
.+++|+.|+|++|+|++.. +....+++|+.|++.+|+..|.
T Consensus 266 ~l~~L~~L~Ls~N~l~~~i--p~~~~l~~L~~l~l~~N~~lc~ 306 (313)
T 1ogq_A 266 QLKFLHSLNVSFNNLCGEI--PQGGNLQRFDVSAYANNKCLCG 306 (313)
T ss_dssp GCTTCCEEECCSSEEEEEC--CCSTTGGGSCGGGTCSSSEEES
T ss_pred cCcCCCEEECcCCcccccC--CCCccccccChHHhcCCCCccC
Confidence 9999999999999998432 2247889999999999995444
No 33
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.87 E-value=2.3e-21 Score=222.62 Aligned_cols=261 Identities=21% Similarity=0.265 Sum_probs=160.4
Q ss_pred hhcCCcEEEecCCCccchHhhhhhcccchhccCCCCCcccccccccCCCCCcchHHHHHhcCCCCCcEEEccCCCCCCCC
Q 002315 24 LIEGSIVLKLNPAGLHYVQSRLEALRELERLLAGAPLDYLRAYVSDLGDHRALEQLRRILKLLTSLKVVSALPPPARDPT 103 (937)
Q Consensus 24 lL~~l~~L~L~~~~L~~Lp~~L~~L~~Le~L~~g~~L~~L~l~vLdLs~n~~le~Lp~~L~~L~~Lk~LdLs~N~Is~~i 103 (937)
.+..++.|++..+.+..++. +..+++|+.|.. ++|.... ++. +.++++|++|+|++|.+.+..
T Consensus 66 ~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~l--------------~~n~l~~-~~~-~~~l~~L~~L~L~~n~l~~~~ 128 (466)
T 1o6v_A 66 YLNNLTQINFSNNQLTDITP-LKNLTKLVDILM--------------NNNQIAD-ITP-LANLTNLTGLTLFNNQITDID 128 (466)
T ss_dssp GCTTCCEEECCSSCCCCCGG-GTTCTTCCEEEC--------------CSSCCCC-CGG-GTTCTTCCEEECCSSCCCCCG
T ss_pred hhcCCCEEECCCCccCCchh-hhccccCCEEEC--------------CCCcccc-Chh-hcCCCCCCEEECCCCCCCCCh
Confidence 35678999999999998876 666666555443 3332222 222 556666666666666665542
Q ss_pred CCCCCCCCCCcEEEeeCCCCCccch-------------------hhHhhhhhhhhhhhccCCCcccchhcccchhcccCC
Q 002315 104 PLSLLPFCRLKVLELRGCDLSTSAA-------------------KGLLELRHTLEKIICHNSTNALRHVFASRIVEIKDS 164 (937)
Q Consensus 104 P~sLs~L~~L~~LdLS~N~Ls~~lp-------------------~~L~~L~~Ll~LlL~~N~L~~L~~l~~~~i~~l~~l 164 (937)
+ +..+++|++|+|++|.+.+... ..+..+++|..+.+.+|.+..++ .+
T Consensus 129 ~--~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~-----------~l 195 (466)
T 1o6v_A 129 P--LKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDIS-----------VL 195 (466)
T ss_dssp G--GTTCTTCSEEEEEEEEECCCGGGTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSSCCCCCG-----------GG
T ss_pred H--HcCCCCCCEEECCCCccCCChhhccCCcccEeecCCcccCchhhccCCCCCEEECcCCcCCCCh-----------hh
Confidence 2 5566666666666665554210 11444445555555555444332 12
Q ss_pred CCCCCccEEEccCCcCccchhhcCCCCCCcEEECCCCCCCCCcCcCCCCCCCEEECCCCCCCCcccccccccccceeccc
Q 002315 165 PQWNRLSFVSCSCNRLVIMDESLQLLPAVETLDLSRNKFAKVDNLRKCVNLKHLDLGFNNLRSIAAFSEVSCHIVKLVLR 244 (937)
Q Consensus 165 ~~l~~L~~L~Ls~N~Ls~LP~sL~~L~~L~~LdLs~N~L~~l~~L~~L~~L~~LdLS~N~Lt~L~~l~~~l~sL~~L~Ls 244 (937)
..+++|+.|++++|.+..++. +..+++|+.|++++|.+..++.+..+++|+.|+|++|.++.+++ ...+++|+.|+|+
T Consensus 196 ~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~ 273 (466)
T 1o6v_A 196 AKLTNLESLIATNNQISDITP-LGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAP-LSGLTKLTELKLG 273 (466)
T ss_dssp GGCTTCSEEECCSSCCCCCGG-GGGCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCCCGG-GTTCTTCSEEECC
T ss_pred ccCCCCCEEEecCCccccccc-ccccCCCCEEECCCCCcccchhhhcCCCCCEEECCCCccccchh-hhcCCCCCEEECC
Confidence 345667777777777765543 55667777777777777766666667777777777777766655 3344667777777
Q ss_pred CccccccccCCCCCCCCEEEccCCCCCCCchhhhhcCCCCCCEEEecCCCCCCCcchhhhHhhhcCCCceeccCCccCCh
Q 002315 245 NNALTTLRGIENLKSLEGLDISYNIISTFSELEFLASLPYLLNLWLEGNPLCCSRWYRAQVFSYFAHPAKLKVDGKEIST 324 (937)
Q Consensus 245 ~N~Lt~Lp~L~~L~sL~~LdLS~N~Ls~l~~l~~L~~L~sL~~L~Ls~NpLt~~~~~r~~~~~~l~~L~~L~LdgN~Is~ 324 (937)
+|.++.++.+..+++|+.|+|++|.+..+++ +..+++|+.|+|++|++..... +..++.|+.|+|.+|+++.
T Consensus 274 ~n~l~~~~~~~~l~~L~~L~L~~n~l~~~~~---~~~l~~L~~L~L~~n~l~~~~~-----~~~l~~L~~L~l~~n~l~~ 345 (466)
T 1o6v_A 274 ANQISNISPLAGLTALTNLELNENQLEDISP---ISNLKNLTYLTLYFNNISDISP-----VSSLTKLQRLFFYNNKVSD 345 (466)
T ss_dssp SSCCCCCGGGTTCTTCSEEECCSSCCSCCGG---GGGCTTCSEEECCSSCCSCCGG-----GGGCTTCCEEECCSSCCCC
T ss_pred CCccCccccccCCCccCeEEcCCCcccCchh---hcCCCCCCEEECcCCcCCCchh-----hccCccCCEeECCCCccCC
Confidence 7777666656666777777777777766543 5566667777777776654431 3456666666666666654
No 34
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.87 E-value=8e-22 Score=244.14 Aligned_cols=291 Identities=15% Similarity=0.134 Sum_probs=192.5
Q ss_pred hhcCCcEEEecCCCc-cchHhhhhhcccchhccCCCC--Ccc---------c--------ccccccCCCCCcchHHHH--
Q 002315 24 LIEGSIVLKLNPAGL-HYVQSRLEALRELERLLAGAP--LDY---------L--------RAYVSDLGDHRALEQLRR-- 81 (937)
Q Consensus 24 lL~~l~~L~L~~~~L-~~Lp~~L~~L~~Le~L~~g~~--L~~---------L--------~l~vLdLs~n~~le~Lp~-- 81 (937)
-+..++.|++..+.+ ..+|..+..|++|+.|....+ +.. + .+..+++++|... .+|.
T Consensus 489 ~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~ 567 (876)
T 4ecn_A 489 NLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASA 567 (876)
T ss_dssp GCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHH
T ss_pred cCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChh
Confidence 467789999988864 678888888888887766433 221 1 3556777777655 6777
Q ss_pred HhcCCCCCcEEEccCCCCCCCCCCCCCCCCCCcEEEeeCCCCCccchhhHhhhhh-hhhhhhccCCCcccchhcccc---
Q 002315 82 ILKLLTSLKVVSALPPPARDPTPLSLLPFCRLKVLELRGCDLSTSAAKGLLELRH-TLEKIICHNSTNALRHVFASR--- 157 (937)
Q Consensus 82 ~L~~L~~Lk~LdLs~N~Is~~iP~sLs~L~~L~~LdLS~N~Ls~~lp~~L~~L~~-Ll~LlL~~N~L~~L~~l~~~~--- 157 (937)
.+.++++|+.|+|++|.++ .+| .|..+++|+.|+|++|.++ .+|..+..+++ |..+.+.+|.+..++..+...
T Consensus 568 ~l~~L~~L~~L~Ls~N~l~-~lp-~~~~L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~~lp~~~~~~~~~ 644 (876)
T 4ecn_A 568 SLQKMVKLGLLDCVHNKVR-HLE-AFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLKYIPNIFNAKSVY 644 (876)
T ss_dssp HHTTCTTCCEEECTTSCCC-BCC-CCCTTSEESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCCCSCCSCCCTTCSS
T ss_pred hhhcCCCCCEEECCCCCcc-cch-hhcCCCcceEEECcCCccc-cchHHHhhccccCCEEECcCCCCCcCchhhhccccC
Confidence 7888888888888888887 666 7888888888888888887 57777888888 888888888877666433210
Q ss_pred -hhc-----------ccCCC------CCCCccEEEccCCcCccchhhc-CCCCCCcEEECCCCCCCCCcC--cC------
Q 002315 158 -IVE-----------IKDSP------QWNRLSFVSCSCNRLVIMDESL-QLLPAVETLDLSRNKFAKVDN--LR------ 210 (937)
Q Consensus 158 -i~~-----------l~~l~------~l~~L~~L~Ls~N~Ls~LP~sL-~~L~~L~~LdLs~N~L~~l~~--L~------ 210 (937)
+.. ++.+. .+++|+.|+|++|.|..+|..+ ..+++|+.|+|++|.|..++. +.
T Consensus 645 ~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L~~ip~~~~~~~~~~l 724 (876)
T 4ecn_A 645 VMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNY 724 (876)
T ss_dssp CEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSCCCSCCCTTSSSCTTSCC
T ss_pred CCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCCccCHHHHccCCCCCEEECCCCcCCccChHHhccccccc
Confidence 000 01111 2236777777777777666644 366777777777777766541 11
Q ss_pred -CCCCCCEEECCCCCCCCcccccc--cccccceecccCccccccc-cCCCCCCCCEEEccC------CCCCCCchhhhhc
Q 002315 211 -KCVNLKHLDLGFNNLRSIAAFSE--VSCHIVKLVLRNNALTTLR-GIENLKSLEGLDISY------NIISTFSELEFLA 280 (937)
Q Consensus 211 -~L~~L~~LdLS~N~Lt~L~~l~~--~l~sL~~L~Ls~N~Lt~Lp-~L~~L~sL~~LdLS~------N~Ls~l~~l~~L~ 280 (937)
++++|+.|+|++|.|+.+|.... .+++|+.|+|++|+|+.+| .+..+++|+.|+|++ |.+....+ ..+.
T Consensus 725 ~nl~~L~~L~Ls~N~L~~lp~~l~~~~l~~L~~L~Ls~N~L~~lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip-~~l~ 803 (876)
T 4ecn_A 725 KNTYLLTTIDLRFNKLTSLSDDFRATTLPYLSNMDVSYNCFSSFPTQPLNSSQLKAFGIRHQRDAEGNRILRQWP-TGIT 803 (876)
T ss_dssp TTGGGCCEEECCSSCCCCCCGGGSTTTCTTCCEEECCSSCCSSCCCGGGGCTTCCEEECCCCBCTTCCBCCCCCC-TTGG
T ss_pred cccCCccEEECCCCCCccchHHhhhccCCCcCEEEeCCCCCCccchhhhcCCCCCEEECCCCCCcccccccccCh-HHHh
Confidence 22367777777777776665554 5667777777777777765 566677777777765 44443222 4566
Q ss_pred CCCCCCEEEecCCCCCCCcchhhhHhhhcCCCceeccCCccCChh
Q 002315 281 SLPYLLNLWLEGNPLCCSRWYRAQVFSYFAHPAKLKVDGKEISTR 325 (937)
Q Consensus 281 ~L~sL~~L~Ls~NpLt~~~~~r~~~~~~l~~L~~L~LdgN~Is~~ 325 (937)
.+++|+.|+|++|++...+.. .++.|+.|+|++|++...
T Consensus 804 ~L~~L~~L~Ls~N~L~~Ip~~------l~~~L~~LdLs~N~l~~i 842 (876)
T 4ecn_A 804 TCPSLIQLQIGSNDIRKVDEK------LTPQLYILDIADNPNISI 842 (876)
T ss_dssp GCSSCCEEECCSSCCCBCCSC------CCSSSCEEECCSCTTCEE
T ss_pred cCCCCCEEECCCCCCCccCHh------hcCCCCEEECCCCCCCcc
Confidence 677777777777777444321 125677777777776543
No 35
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.87 E-value=4.1e-22 Score=243.29 Aligned_cols=226 Identities=20% Similarity=0.187 Sum_probs=160.7
Q ss_pred CCCCcEEEccCCCCCCCCCCCCCCCCCCcEEEeeCCCCCccchhhHhhhhhhhhhhhccCCCcc-cchhcccchhcccCC
Q 002315 86 LTSLKVVSALPPPARDPTPLSLLPFCRLKVLELRGCDLSTSAAKGLLELRHTLEKIICHNSTNA-LRHVFASRIVEIKDS 164 (937)
Q Consensus 86 L~~Lk~LdLs~N~Is~~iP~sLs~L~~L~~LdLS~N~Ls~~lp~~L~~L~~Ll~LlL~~N~L~~-L~~l~~~~i~~l~~l 164 (937)
+++|+.|+|++|.+++.+|..|..+++|++|+|++|.+++.+|..+..+++|..+.+.+|.+.. ++.. +
T Consensus 393 ~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~----------~ 462 (768)
T 3rgz_A 393 KNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQE----------L 462 (768)
T ss_dssp TCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGG----------G
T ss_pred cCCccEEECCCCccccccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHH----------H
Confidence 4445555555555555555555555555555555555555555555555555555555554331 1111 2
Q ss_pred CCCCCccEEEccCCcCc-cchhhcCCCCCCcEEECCCCCCCC-Cc-CcCCCCCCCEEECCCCCCCC-cccccccccccce
Q 002315 165 PQWNRLSFVSCSCNRLV-IMDESLQLLPAVETLDLSRNKFAK-VD-NLRKCVNLKHLDLGFNNLRS-IAAFSEVSCHIVK 240 (937)
Q Consensus 165 ~~l~~L~~L~Ls~N~Ls-~LP~sL~~L~~L~~LdLs~N~L~~-l~-~L~~L~~L~~LdLS~N~Lt~-L~~l~~~l~sL~~ 240 (937)
..+++|+.|++++|.+. .+|..+..+++|++|+|++|++.+ +| .+..+++|+.|+|++|.+++ +|.....+++|+.
T Consensus 463 ~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~ 542 (768)
T 3rgz_A 463 MYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIW 542 (768)
T ss_dssp GGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCE
T ss_pred cCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCE
Confidence 24678889999999888 778888889999999999998885 34 67888899999999998884 5666667788999
Q ss_pred ecccCccccc-cc-------------------------------------------------------------------
Q 002315 241 LVLRNNALTT-LR------------------------------------------------------------------- 252 (937)
Q Consensus 241 L~Ls~N~Lt~-Lp------------------------------------------------------------------- 252 (937)
|+|++|.+++ +|
T Consensus 543 L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g 622 (768)
T 3rgz_A 543 LDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGG 622 (768)
T ss_dssp EECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEE
T ss_pred EECCCCccCCcCChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhccccccccccccceecc
Confidence 9999998763 22
Q ss_pred ----cCCCCCCCCEEEccCCCCCCCchhhhhcCCCCCCEEEecCCCCCCCcchhhhHhhhcCCCceeccCCccCChh
Q 002315 253 ----GIENLKSLEGLDISYNIISTFSELEFLASLPYLLNLWLEGNPLCCSRWYRAQVFSYFAHPAKLKVDGKEISTR 325 (937)
Q Consensus 253 ----~L~~L~sL~~LdLS~N~Ls~l~~l~~L~~L~sL~~L~Ls~NpLt~~~~~r~~~~~~l~~L~~L~LdgN~Is~~ 325 (937)
.+..+++|+.|+|++|++++..+ ..++.++.|+.|+|++|.++... +..+..++.|+.|+|++|.++..
T Consensus 623 ~~~~~~~~l~~L~~LdLs~N~l~g~ip-~~l~~l~~L~~L~Ls~N~l~g~i---p~~l~~L~~L~~LdLs~N~l~g~ 695 (768)
T 3rgz_A 623 HTSPTFDNNGSMMFLDMSYNMLSGYIP-KEIGSMPYLFILNLGHNDISGSI---PDEVGDLRGLNILDLSSNKLDGR 695 (768)
T ss_dssp ECCCSCSSSBCCCEEECCSSCCBSCCC-GGGGGCTTCCEEECCSSCCCSCC---CGGGGGCTTCCEEECCSSCCEEC
T ss_pred cCchhhhccccccEEECcCCcccccCC-HHHhccccCCEEeCcCCccCCCC---ChHHhCCCCCCEEECCCCcccCc
Confidence 13345788999999999986443 67889999999999999998543 35677889999999999998743
No 36
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.87 E-value=1.2e-22 Score=219.60 Aligned_cols=267 Identities=21% Similarity=0.227 Sum_probs=206.4
Q ss_pred EEEecCCCccchHhhhhhcccchhccCCCCCcccccccccCCCCCcchHHHH-HhcCCCCCcEEEccCCCCCCC--CCCC
Q 002315 30 VLKLNPAGLHYVQSRLEALRELERLLAGAPLDYLRAYVSDLGDHRALEQLRR-ILKLLTSLKVVSALPPPARDP--TPLS 106 (937)
Q Consensus 30 ~L~L~~~~L~~Lp~~L~~L~~Le~L~~g~~L~~L~l~vLdLs~n~~le~Lp~-~L~~L~~Lk~LdLs~N~Is~~--iP~s 106 (937)
.+++...++..+|..+. .. +..+++++|... .+|. .|.++++|+.|+|++|.+... .|..
T Consensus 11 ~l~c~~~~l~~ip~~~~--~~--------------l~~L~L~~n~l~-~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~ 73 (306)
T 2z66_A 11 EIRCNSKGLTSVPTGIP--SS--------------ATRLELESNKLQ-SLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQS 73 (306)
T ss_dssp EEECCSSCCSSCCSCCC--TT--------------CCEEECCSSCCC-CCCTTTTTTCTTCSEEECCSSCCCEEEEEEHH
T ss_pred EEEcCCCCcccCCCCCC--CC--------------CCEEECCCCccC-ccCHhHhhccccCCEEECCCCccCcccCcccc
Confidence 56777777777775332 11 223556666543 4544 578999999999999998743 3566
Q ss_pred CCCCCCCcEEEeeCCCCCccchhhHhhhhhhhhhhhccCCCcccchhcccchhcccCCCCCCCccEEEccCCcCcc-chh
Q 002315 107 LLPFCRLKVLELRGCDLSTSAAKGLLELRHTLEKIICHNSTNALRHVFASRIVEIKDSPQWNRLSFVSCSCNRLVI-MDE 185 (937)
Q Consensus 107 Ls~L~~L~~LdLS~N~Ls~~lp~~L~~L~~Ll~LlL~~N~L~~L~~l~~~~i~~l~~l~~l~~L~~L~Ls~N~Ls~-LP~ 185 (937)
+..+++|++|+|++|.+.. +|..+..+++|..+.+.+|.+..+... ..+..+++|++|++++|.+.. .|.
T Consensus 74 ~~~~~~L~~L~Ls~n~i~~-l~~~~~~l~~L~~L~l~~n~l~~~~~~--------~~~~~l~~L~~L~l~~n~l~~~~~~ 144 (306)
T 2z66_A 74 DFGTTSLKYLDLSFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEF--------SVFLSLRNLIYLDISHTHTRVAFNG 144 (306)
T ss_dssp HHSCSCCCEEECCSCSEEE-EEEEEETCTTCCEEECTTSEEESSTTT--------TTTTTCTTCCEEECTTSCCEECSTT
T ss_pred cccccccCEEECCCCcccc-ChhhcCCCCCCCEEECCCCcccccccc--------hhhhhccCCCEEECCCCcCCccchh
Confidence 7789999999999999986 666788999999999999976655431 123467899999999999984 455
Q ss_pred hcCCCCCCcEEECCCCCCCC--C-cCcCCCCCCCEEECCCCCCCCcc-cccccccccceecccCccccccc--cCCCCCC
Q 002315 186 SLQLLPAVETLDLSRNKFAK--V-DNLRKCVNLKHLDLGFNNLRSIA-AFSEVSCHIVKLVLRNNALTTLR--GIENLKS 259 (937)
Q Consensus 186 sL~~L~~L~~LdLs~N~L~~--l-~~L~~L~~L~~LdLS~N~Lt~L~-~l~~~l~sL~~L~Ls~N~Lt~Lp--~L~~L~s 259 (937)
.+..+++|++|+|++|.+.. + ..+..+++|+.|+|++|.|+.++ ..+..+++|+.|+|++|.|+.++ .+..+++
T Consensus 145 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~ 224 (306)
T 2z66_A 145 IFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNS 224 (306)
T ss_dssp TTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTT
T ss_pred hcccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCccc
Confidence 78899999999999999986 3 47889999999999999999874 45566789999999999999975 6889999
Q ss_pred CCEEEccCCCCCCCchhhhhcCCC-CCCEEEecCCCCCCCcchhhhHhhhcCCCceeccCCccCCh
Q 002315 260 LEGLDISYNIISTFSELEFLASLP-YLLNLWLEGNPLCCSRWYRAQVFSYFAHPAKLKVDGKEIST 324 (937)
Q Consensus 260 L~~LdLS~N~Ls~l~~l~~L~~L~-sL~~L~Ls~NpLt~~~~~r~~~~~~l~~L~~L~LdgN~Is~ 324 (937)
|+.|+|++|.|....+ ..+..++ +|+.|+|++|++.|.+... .....+...+.+.++.+.+.|
T Consensus 225 L~~L~L~~N~l~~~~~-~~~~~~~~~L~~L~L~~N~~~~~c~~~-~~~~~l~~~~~~~~~~~~~~C 288 (306)
T 2z66_A 225 LQVLDYSLNHIMTSKK-QELQHFPSSLAFLNLTQNDFACTCEHQ-SFLQWIKDQRQLLVEVERMEC 288 (306)
T ss_dssp CCEEECTTSCCCBCSS-SSCCCCCTTCCEEECTTCCEECSGGGH-HHHHHHHHTGGGBSCGGGCBE
T ss_pred CCEeECCCCCCcccCH-HHHHhhhccCCEEEccCCCeecccChH-HHHHHHHhhhhhhcccccccc
Confidence 9999999999998764 5677775 9999999999999987543 222334444444555555544
No 37
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.87 E-value=7.3e-22 Score=216.49 Aligned_cols=237 Identities=16% Similarity=0.138 Sum_probs=202.3
Q ss_pred cccccCCCCCcchHHHHHhcCCCCCcEEEccCCCCCCCCCCCCCCCCCCcEEEeeCCCCCccchhhHhhhhhhhhhhhcc
Q 002315 65 AYVSDLGDHRALEQLRRILKLLTSLKVVSALPPPARDPTPLSLLPFCRLKVLELRGCDLSTSAAKGLLELRHTLEKIICH 144 (937)
Q Consensus 65 l~vLdLs~n~~le~Lp~~L~~L~~Lk~LdLs~N~Is~~iP~sLs~L~~L~~LdLS~N~Ls~~lp~~L~~L~~Ll~LlL~~ 144 (937)
+..++++++. +..+|..+ .++|+.|+|++|.+....|..|..+++|++|+|++|.+++..|..|..+++|..+.+.+
T Consensus 35 l~~l~~~~~~-l~~ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 111 (332)
T 2ft3_A 35 LRVVQCSDLG-LKAVPKEI--SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISK 111 (332)
T ss_dssp TTEEECCSSC-CSSCCSCC--CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCS
T ss_pred CCEEECCCCC-ccccCCCC--CCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCC
Confidence 3445666554 44566544 47999999999999988888999999999999999999998899999999999999999
Q ss_pred CCCcccchhcccchhcccCCCCCCCccEEEccCCcCccchh-hcCCCCCCcEEECCCCCCCC--C--cCcCCCCCCCEEE
Q 002315 145 NSTNALRHVFASRIVEIKDSPQWNRLSFVSCSCNRLVIMDE-SLQLLPAVETLDLSRNKFAK--V--DNLRKCVNLKHLD 219 (937)
Q Consensus 145 N~L~~L~~l~~~~i~~l~~l~~l~~L~~L~Ls~N~Ls~LP~-sL~~L~~L~~LdLs~N~L~~--l--~~L~~L~~L~~Ld 219 (937)
|.+..++..+ .++|++|++++|.|..+|. .+..+++|+.|++++|.++. + ..+..+ +|+.|+
T Consensus 112 n~l~~l~~~~------------~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~ 178 (332)
T 2ft3_A 112 NHLVEIPPNL------------PSSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLR 178 (332)
T ss_dssp SCCCSCCSSC------------CTTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCB
T ss_pred CcCCccCccc------------cccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEE
Confidence 9887666432 2589999999999998876 58999999999999999964 2 356667 999999
Q ss_pred CCCCCCCCcccccccccccceecccCccccccc--cCCCCCCCCEEEccCCCCCCCchhhhhcCCCCCCEEEecCCCCCC
Q 002315 220 LGFNNLRSIAAFSEVSCHIVKLVLRNNALTTLR--GIENLKSLEGLDISYNIISTFSELEFLASLPYLLNLWLEGNPLCC 297 (937)
Q Consensus 220 LS~N~Lt~L~~l~~~l~sL~~L~Ls~N~Lt~Lp--~L~~L~sL~~LdLS~N~Ls~l~~l~~L~~L~sL~~L~Ls~NpLt~ 297 (937)
+++|.++.++.... ++|+.|+|++|.|+.++ .+..+++|+.|+|++|.|+.+++ ..+..+++|+.|+|++|.++.
T Consensus 179 l~~n~l~~l~~~~~--~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~-~~~~~l~~L~~L~L~~N~l~~ 255 (332)
T 2ft3_A 179 ISEAKLTGIPKDLP--ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIEN-GSLSFLPTLRELHLDNNKLSR 255 (332)
T ss_dssp CCSSBCSSCCSSSC--SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCT-TGGGGCTTCCEEECCSSCCCB
T ss_pred CcCCCCCccCcccc--CCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCCh-hHhhCCCCCCEEECCCCcCee
Confidence 99999999886443 78999999999999975 78999999999999999999875 568899999999999999985
Q ss_pred CcchhhhHhhhcCCCceeccCCccCCh
Q 002315 298 SRWYRAQVFSYFAHPAKLKVDGKEIST 324 (937)
Q Consensus 298 ~~~~r~~~~~~l~~L~~L~LdgN~Is~ 324 (937)
.+ ..+..++.|+.++|++|+++.
T Consensus 256 lp----~~l~~l~~L~~L~l~~N~l~~ 278 (332)
T 2ft3_A 256 VP----AGLPDLKLLQVVYLHTNNITK 278 (332)
T ss_dssp CC----TTGGGCTTCCEEECCSSCCCB
T ss_pred cC----hhhhcCccCCEEECCCCCCCc
Confidence 54 336678999999999999975
No 38
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.87 E-value=1.1e-21 Score=232.72 Aligned_cols=226 Identities=20% Similarity=0.202 Sum_probs=137.2
Q ss_pred HhcCCCCCcEEEccCCCCCCCCCCCCCCCCCCcEEEeeCCCCCccchhhHhhhhhhhhhhhccCCCcccchhcccchhcc
Q 002315 82 ILKLLTSLKVVSALPPPARDPTPLSLLPFCRLKVLELRGCDLSTSAAKGLLELRHTLEKIICHNSTNALRHVFASRIVEI 161 (937)
Q Consensus 82 ~L~~L~~Lk~LdLs~N~Is~~iP~sLs~L~~L~~LdLS~N~Ls~~lp~~L~~L~~Ll~LlL~~N~L~~L~~l~~~~i~~l 161 (937)
.+..+++|+.|+|++|.+.+..|..|..+++|++|+|++|.|++..|..|..+++|..|.+.+|.+..++...+
T Consensus 70 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~------ 143 (597)
T 3oja_B 70 LLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIF------ 143 (597)
T ss_dssp HHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTT------
T ss_pred HHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCCCCCCCHHHh------
Confidence 45566666666666666666555566666666666666666666555556666666666666665554443221
Q ss_pred cCCCCCCCccEEEccCCcCccchh-hcCCCCCCcEEECCCCCCCCCcCcCCC----------------------------
Q 002315 162 KDSPQWNRLSFVSCSCNRLVIMDE-SLQLLPAVETLDLSRNKFAKVDNLRKC---------------------------- 212 (937)
Q Consensus 162 ~~l~~l~~L~~L~Ls~N~Ls~LP~-sL~~L~~L~~LdLs~N~L~~l~~L~~L---------------------------- 212 (937)
..+++|++|+|++|.|..++. .|..+++|++|+|++|.++.++ +..+
T Consensus 144 ---~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~-~~~l~~L~~L~l~~n~l~~l~~~~~L~~L~ls 219 (597)
T 3oja_B 144 ---HNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD-LSLIPSLFHANVSYNLLSTLAIPIAVEELDAS 219 (597)
T ss_dssp ---TTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCC-GGGCTTCSEEECCSSCCSEEECCTTCSEEECC
T ss_pred ---ccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcC-hhhhhhhhhhhcccCccccccCCchhheeecc
Confidence 234455666666665554433 4555556666666665555432 1111
Q ss_pred ------------CCCCEEECCCCCCCCcccccccccccceecccCcccccc-c-cCCCCCCCCEEEccCCCCCCCchhhh
Q 002315 213 ------------VNLKHLDLGFNNLRSIAAFSEVSCHIVKLVLRNNALTTL-R-GIENLKSLEGLDISYNIISTFSELEF 278 (937)
Q Consensus 213 ------------~~L~~LdLS~N~Lt~L~~l~~~l~sL~~L~Ls~N~Lt~L-p-~L~~L~sL~~LdLS~N~Ls~l~~l~~ 278 (937)
++|+.|+|++|.++.++ ....+++|+.|+|++|.|+.+ | .+..+++|+.|+|++|.|+.++ ..
T Consensus 220 ~n~l~~~~~~~~~~L~~L~L~~n~l~~~~-~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~--~~ 296 (597)
T 3oja_B 220 HNSINVVRGPVNVELTILKLQHNNLTDTA-WLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALN--LY 296 (597)
T ss_dssp SSCCCEEECSCCSCCCEEECCSSCCCCCG-GGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSCCCEEE--CS
T ss_pred CCcccccccccCCCCCEEECCCCCCCCCh-hhccCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCCCCCCCC--cc
Confidence 24555555555555432 233456777777777777765 2 6677777777777777777765 34
Q ss_pred hcCCCCCCEEEecCCCCCCCcchhhhHhhhcCCCceeccCCccCCh
Q 002315 279 LASLPYLLNLWLEGNPLCCSRWYRAQVFSYFAHPAKLKVDGKEIST 324 (937)
Q Consensus 279 L~~L~sL~~L~Ls~NpLt~~~~~r~~~~~~l~~L~~L~LdgN~Is~ 324 (937)
+..+++|+.|+|++|++...+ ..+..++.|+.|+|++|.++.
T Consensus 297 ~~~l~~L~~L~Ls~N~l~~i~----~~~~~l~~L~~L~L~~N~l~~ 338 (597)
T 3oja_B 297 GQPIPTLKVLDLSHNHLLHVE----RNQPQFDRLENLYLDHNSIVT 338 (597)
T ss_dssp SSCCTTCCEEECCSSCCCCCG----GGHHHHTTCSEEECCSSCCCC
T ss_pred cccCCCCcEEECCCCCCCccC----cccccCCCCCEEECCCCCCCC
Confidence 456777888888888777544 234567778888888887764
No 39
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.87 E-value=3.1e-22 Score=221.30 Aligned_cols=271 Identities=16% Similarity=0.132 Sum_probs=215.2
Q ss_pred EEEecCCCccchHhhhhhcccchhccCCCCCcccccccccCCCCCcchHHHHHhcCCCCCcEEEccCCCCCCCCCCCCCC
Q 002315 30 VLKLNPAGLHYVQSRLEALRELERLLAGAPLDYLRAYVSDLGDHRALEQLRRILKLLTSLKVVSALPPPARDPTPLSLLP 109 (937)
Q Consensus 30 ~L~L~~~~L~~Lp~~L~~L~~Le~L~~g~~L~~L~l~vLdLs~n~~le~Lp~~L~~L~~Lk~LdLs~N~Is~~iP~sLs~ 109 (937)
..++....+..+|..+. + .+..+++++|......+..+.++++|+.|+|++|.+++..|..|..
T Consensus 35 ~c~~~~~~l~~iP~~~~--~--------------~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~ 98 (353)
T 2z80_A 35 ICKGSSGSLNSIPSGLT--E--------------AVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSS 98 (353)
T ss_dssp EEECCSTTCSSCCTTCC--T--------------TCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTT
T ss_pred EeeCCCCCccccccccc--c--------------cCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCC
Confidence 46666777777765432 1 2334667777654433447899999999999999999988889999
Q ss_pred CCCCcEEEeeCCCCCccchhhHhhhhhhhhhhhccCCCcccchhcccchhcccCCCCCCCccEEEccCC-cCccch-hhc
Q 002315 110 FCRLKVLELRGCDLSTSAAKGLLELRHTLEKIICHNSTNALRHVFASRIVEIKDSPQWNRLSFVSCSCN-RLVIMD-ESL 187 (937)
Q Consensus 110 L~~L~~LdLS~N~Ls~~lp~~L~~L~~Ll~LlL~~N~L~~L~~l~~~~i~~l~~l~~l~~L~~L~Ls~N-~Ls~LP-~sL 187 (937)
+++|++|+|++|.+++..+..+..+++|.++.+.+|.+..++.. ..+..+++|++|++++| .+..++ ..+
T Consensus 99 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~--------~~~~~l~~L~~L~l~~n~~~~~~~~~~~ 170 (353)
T 2z80_A 99 LGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGET--------SLFSHLTKLQILRVGNMDTFTKIQRKDF 170 (353)
T ss_dssp CTTCCEEECCSSCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSS--------CSCTTCTTCCEEEEEESSSCCEECTTTT
T ss_pred CCCCCEEECCCCcCCcCCHhHhCCCccCCEEECCCCCCcccCch--------hhhccCCCCcEEECCCCccccccCHHHc
Confidence 99999999999999986666699999999999999987766540 11346789999999999 577664 578
Q ss_pred CCCCCCcEEECCCCCCCCC--cCcCCCCCCCEEECCCCCCCCccccc-ccccccceecccCccccccc-----cCCCCCC
Q 002315 188 QLLPAVETLDLSRNKFAKV--DNLRKCVNLKHLDLGFNNLRSIAAFS-EVSCHIVKLVLRNNALTTLR-----GIENLKS 259 (937)
Q Consensus 188 ~~L~~L~~LdLs~N~L~~l--~~L~~L~~L~~LdLS~N~Lt~L~~l~-~~l~sL~~L~Ls~N~Lt~Lp-----~L~~L~s 259 (937)
..+++|++|++++|.+..+ ..+..+++|++|+|++|.++.++... ..+++|+.|+|++|.++.++ ....+..
T Consensus 171 ~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~ 250 (353)
T 2z80_A 171 AGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSL 250 (353)
T ss_dssp TTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCC
T ss_pred cCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCccccchhhhhhhcccccEEECCCCccccccccccccccccch
Confidence 9999999999999999886 37889999999999999998887643 34689999999999998853 2345678
Q ss_pred CCEEEccCCCCCCCch---hhhhcCCCCCCEEEecCCCCCCCcchhhhHhhhcCCCceeccCCccCChhhH
Q 002315 260 LEGLDISYNIISTFSE---LEFLASLPYLLNLWLEGNPLCCSRWYRAQVFSYFAHPAKLKVDGKEISTREL 327 (937)
Q Consensus 260 L~~LdLS~N~Ls~l~~---l~~L~~L~sL~~L~Ls~NpLt~~~~~r~~~~~~l~~L~~L~LdgN~Is~~e~ 327 (937)
++.++|+++.+.+... ...+..+++|+.|+|++|.++..+ ...+..++.|+.++|++|++.+...
T Consensus 251 l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~~i~---~~~~~~l~~L~~L~L~~N~~~~~~~ 318 (353)
T 2z80_A 251 IKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLKSVP---DGIFDRLTSLQKIWLHTNPWDCSCP 318 (353)
T ss_dssp CCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCCCCC---TTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred hhccccccccccCcchhhhHHHHhcccCCCEEECCCCCCCccC---HHHHhcCCCCCEEEeeCCCccCcCC
Confidence 9999999998876211 145788999999999999998554 3445778999999999999998764
No 40
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.86 E-value=3.9e-21 Score=225.73 Aligned_cols=160 Identities=21% Similarity=0.180 Sum_probs=128.9
Q ss_pred CCCCCccEEEccCCcCcc-chhhcCCCCCCcEEECCCCCCCCCc----CcCCCCCCCEEECCCCCCCC-ccc-ccccccc
Q 002315 165 PQWNRLSFVSCSCNRLVI-MDESLQLLPAVETLDLSRNKFAKVD----NLRKCVNLKHLDLGFNNLRS-IAA-FSEVSCH 237 (937)
Q Consensus 165 ~~l~~L~~L~Ls~N~Ls~-LP~sL~~L~~L~~LdLs~N~L~~l~----~L~~L~~L~~LdLS~N~Lt~-L~~-l~~~l~s 237 (937)
..+++|++|++++|.++. +|..+..+++|+.|+|++|+++.++ .+..+++|+.|+|++|.++. ++. ....+++
T Consensus 350 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~ 429 (562)
T 3a79_B 350 PSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAES 429 (562)
T ss_dssp SSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTT
T ss_pred cCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCccc
Confidence 456788889999998885 6778888999999999999888764 47888999999999999887 665 3456688
Q ss_pred cceecccCccccccccCCCC-CCCCEEEccCCCCCCCchhhhhcCCCCCCEEEecCCCCCCCcchhhhHhhhcCCCceec
Q 002315 238 IVKLVLRNNALTTLRGIENL-KSLEGLDISYNIISTFSELEFLASLPYLLNLWLEGNPLCCSRWYRAQVFSYFAHPAKLK 316 (937)
Q Consensus 238 L~~L~Ls~N~Lt~Lp~L~~L-~sL~~LdLS~N~Ls~l~~l~~L~~L~sL~~L~Ls~NpLt~~~~~r~~~~~~l~~L~~L~ 316 (937)
|+.|+|++|+|++.. +..+ ++|+.|+|++|+|+.+| ..+..+++|+.|+|++|.++..+. ..+..++.|+.++
T Consensus 430 L~~L~l~~n~l~~~~-~~~l~~~L~~L~L~~N~l~~ip--~~~~~l~~L~~L~L~~N~l~~l~~---~~~~~l~~L~~L~ 503 (562)
T 3a79_B 430 ILVLNLSSNMLTGSV-FRCLPPKVKVLDLHNNRIMSIP--KDVTHLQALQELNVASNQLKSVPD---GVFDRLTSLQYIW 503 (562)
T ss_dssp CCEEECCSSCCCGGG-GSSCCTTCSEEECCSSCCCCCC--TTTTSSCCCSEEECCSSCCCCCCT---TSTTTCTTCCCEE
T ss_pred CCEEECCCCCCCcch-hhhhcCcCCEEECCCCcCcccC--hhhcCCCCCCEEECCCCCCCCCCH---HHHhcCCCCCEEE
Confidence 999999999887631 1223 69999999999999987 445599999999999999986652 2467889999999
Q ss_pred cCCccCChhhHHHH
Q 002315 317 VDGKEISTRELWER 330 (937)
Q Consensus 317 LdgN~Is~~e~~~~ 330 (937)
|++|++.|......
T Consensus 504 l~~N~~~c~c~~~~ 517 (562)
T 3a79_B 504 LHDNPWDCTCPGIR 517 (562)
T ss_dssp CCSCCBCCCHHHHH
T ss_pred ecCCCcCCCcchHH
Confidence 99999998775443
No 41
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.86 E-value=5.2e-22 Score=233.94 Aligned_cols=242 Identities=16% Similarity=0.091 Sum_probs=199.9
Q ss_pred cccCCCCCcchHHHHHhcCCCCCcEEEccCCCCCCCCCCCCCCCCCCcEEEeeCCCCCcc--chhhHhhhhhhhhhhhcc
Q 002315 67 VSDLGDHRALEQLRRILKLLTSLKVVSALPPPARDPTPLSLLPFCRLKVLELRGCDLSTS--AAKGLLELRHTLEKIICH 144 (937)
Q Consensus 67 vLdLs~n~~le~Lp~~L~~L~~Lk~LdLs~N~Is~~iP~sLs~L~~L~~LdLS~N~Ls~~--lp~~L~~L~~Ll~LlL~~ 144 (937)
.+++++|.. +.+| .+ .+++|+.|++++|..... ..+..+++|++|+|++|.+++. .|..+..+++|..+.+.+
T Consensus 311 ~L~l~~n~l-~~lp-~~-~l~~L~~L~l~~n~~~~~--~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~ 385 (606)
T 3vq2_A 311 SLSIIRCQL-KQFP-TL-DLPFLKSLTLTMNKGSIS--FKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSF 385 (606)
T ss_dssp EEEEESCCC-SSCC-CC-CCSSCCEEEEESCSSCEE--CCCCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCS
T ss_pred EEEcccccC-cccc-cC-CCCccceeeccCCcCccc--hhhccCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCC
Confidence 345566655 6677 34 889999999999865443 3677899999999999999875 378889999999999999
Q ss_pred CCCcccchhcccchhcccCCCCCCCccEEEccCCcCccchh--hcCCCCCCcEEECCCCCCCCC--cCcCCCCCCCEEEC
Q 002315 145 NSTNALRHVFASRIVEIKDSPQWNRLSFVSCSCNRLVIMDE--SLQLLPAVETLDLSRNKFAKV--DNLRKCVNLKHLDL 220 (937)
Q Consensus 145 N~L~~L~~l~~~~i~~l~~l~~l~~L~~L~Ls~N~Ls~LP~--sL~~L~~L~~LdLs~N~L~~l--~~L~~L~~L~~LdL 220 (937)
|.+..++. .+..+++|+.|++++|.+..++. .+..+++|++|++++|.+... ..+..+++|+.|+|
T Consensus 386 n~l~~~~~----------~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 455 (606)
T 3vq2_A 386 NGAIIMSA----------NFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKM 455 (606)
T ss_dssp CSEEEECC----------CCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEEC
T ss_pred Cccccchh----------hccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccchhhhcCCCCCCEEEC
Confidence 87666542 23467899999999999996654 788999999999999999874 36889999999999
Q ss_pred CCCCCCC--cccccccccccceecccCccccccc--cCCCCCCCCEEEccCCCCCCCchhhhhcCCCCCCEEEecCCCCC
Q 002315 221 GFNNLRS--IAAFSEVSCHIVKLVLRNNALTTLR--GIENLKSLEGLDISYNIISTFSELEFLASLPYLLNLWLEGNPLC 296 (937)
Q Consensus 221 S~N~Lt~--L~~l~~~l~sL~~L~Ls~N~Lt~Lp--~L~~L~sL~~LdLS~N~Ls~l~~l~~L~~L~sL~~L~Ls~NpLt 296 (937)
++|.++. ++..+..+++|+.|+|++|.|+.++ .+..+++|+.|+|++|+++.+.+ ..+..+++|+.|+|++|+++
T Consensus 456 ~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-~~~~~l~~L~~L~l~~N~l~ 534 (606)
T 3vq2_A 456 AGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDS-SHYNQLYSLSTLDCSFNRIE 534 (606)
T ss_dssp TTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEG-GGTTTCTTCCEEECTTSCCC
T ss_pred CCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEECCCCcCCCcCH-HHccCCCcCCEEECCCCcCc
Confidence 9999986 5666677899999999999999863 68999999999999999999754 67899999999999999998
Q ss_pred CCcchhhhHhhhcC-CCceeccCCccCChhhHH
Q 002315 297 CSRWYRAQVFSYFA-HPAKLKVDGKEISTRELW 328 (937)
Q Consensus 297 ~~~~~r~~~~~~l~-~L~~L~LdgN~Is~~e~~ 328 (937)
..+. . +..++ .|+.++|++|++.|....
T Consensus 535 ~~p~---~-~~~l~~~L~~l~l~~N~~~c~c~~ 563 (606)
T 3vq2_A 535 TSKG---I-LQHFPKSLAFFNLTNNSVACICEH 563 (606)
T ss_dssp CEES---C-GGGSCTTCCEEECCSCCCCCSSTT
T ss_pred ccCH---h-HhhhcccCcEEEccCCCcccCCcc
Confidence 6552 2 55665 599999999999986644
No 42
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.86 E-value=1.3e-21 Score=233.96 Aligned_cols=269 Identities=16% Similarity=0.147 Sum_probs=208.6
Q ss_pred hhcCCcEEEecCCCccchH-hhhhhcccchhccCCCCC---c-----------ccccccccCCCCCcchHHHHHhcCCCC
Q 002315 24 LIEGSIVLKLNPAGLHYVQ-SRLEALRELERLLAGAPL---D-----------YLRAYVSDLGDHRALEQLRRILKLLTS 88 (937)
Q Consensus 24 lL~~l~~L~L~~~~L~~Lp-~~L~~L~~Le~L~~g~~L---~-----------~L~l~vLdLs~n~~le~Lp~~L~~L~~ 88 (937)
.+.+++.|++..+.+..++ ..+..+++|+.+....+. . .-.+..+++++|...+..|..+..+++
T Consensus 327 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~ 406 (680)
T 1ziw_A 327 WLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGH 406 (680)
T ss_dssp TCTTCCEEECCSCCBCCCCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTT
T ss_pred cCCCCCEEECCCCccCCCChhHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhCCCC
Confidence 3566778888888777654 335666666665542210 0 013445677777766666677888888
Q ss_pred CcEEEccCCCCCCCCC-CCCCCCCCCcEEEeeCCCCCccchhhHhhhhhhhhhhhccCCCcccchhcccchhcccCCCCC
Q 002315 89 LKVVSALPPPARDPTP-LSLLPFCRLKVLELRGCDLSTSAAKGLLELRHTLEKIICHNSTNALRHVFASRIVEIKDSPQW 167 (937)
Q Consensus 89 Lk~LdLs~N~Is~~iP-~sLs~L~~L~~LdLS~N~Ls~~lp~~L~~L~~Ll~LlL~~N~L~~L~~l~~~~i~~l~~l~~l 167 (937)
|+.|+|++|.+.+.+| ..|..+++|++|+|++|.+.+..+..|..++.+..+.+.+|.+..+... + ..+..+
T Consensus 407 L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~-p------~~~~~l 479 (680)
T 1ziw_A 407 LEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSS-P------SPFQPL 479 (680)
T ss_dssp CCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCS-S------CTTTTC
T ss_pred CCEEeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhccccccccccC-C------cccccC
Confidence 8888888888876444 6778888888888888888877777788888888888887765433211 1 123467
Q ss_pred CCccEEEccCCcCccchh-hcCCCCCCcEEECCCCCCCCCc----------CcCCCCCCCEEECCCCCCCCccc-ccccc
Q 002315 168 NRLSFVSCSCNRLVIMDE-SLQLLPAVETLDLSRNKFAKVD----------NLRKCVNLKHLDLGFNNLRSIAA-FSEVS 235 (937)
Q Consensus 168 ~~L~~L~Ls~N~Ls~LP~-sL~~L~~L~~LdLs~N~L~~l~----------~L~~L~~L~~LdLS~N~Lt~L~~-l~~~l 235 (937)
++|+.|++++|.|+.+|. .|..+++|++|+|++|.++.++ .|..+++|+.|+|++|.|+.++. .+..+
T Consensus 480 ~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l 559 (680)
T 1ziw_A 480 RNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDL 559 (680)
T ss_dssp TTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCCCCTTTTTTC
T ss_pred CCCCEEECCCCCCCcCChhhhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCCCCCCHHHcccc
Confidence 899999999999998876 5899999999999999998652 37889999999999999999886 45678
Q ss_pred cccceecccCccccccc--cCCCCCCCCEEEccCCCCCCCchhhhhc-CCCCCCEEEecCCCCCCCcc
Q 002315 236 CHIVKLVLRNNALTTLR--GIENLKSLEGLDISYNIISTFSELEFLA-SLPYLLNLWLEGNPLCCSRW 300 (937)
Q Consensus 236 ~sL~~L~Ls~N~Lt~Lp--~L~~L~sL~~LdLS~N~Ls~l~~l~~L~-~L~sL~~L~Ls~NpLt~~~~ 300 (937)
++|+.|+|++|+|+.++ .+..+++|+.|+|++|+|+.+++ ..+. .+++|+.|+|++||+.|.|.
T Consensus 560 ~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~-~~~~~~~~~L~~l~l~~N~~~c~c~ 626 (680)
T 1ziw_A 560 FELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEK-KVFGPAFRNLTELDMRFNPFDCTCE 626 (680)
T ss_dssp TTCCEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCCCBCCH-HHHHHHHTTCSEEECTTCCCCBCCC
T ss_pred cCcceeECCCCCCCcCCHhHhCCCCCCCEEECCCCcCCccCh-hHhcccccccCEEEccCCCcccCCc
Confidence 99999999999999986 57899999999999999999875 4455 68899999999999999884
No 43
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.86 E-value=3.8e-21 Score=223.61 Aligned_cols=288 Identities=17% Similarity=0.157 Sum_probs=186.4
Q ss_pred hcCCcEEEecCCCccch-HhhhhhcccchhccCCC-CCc---------ccccccccCCCCCcchHHHHHhcCCCCCcEEE
Q 002315 25 IEGSIVLKLNPAGLHYV-QSRLEALRELERLLAGA-PLD---------YLRAYVSDLGDHRALEQLRRILKLLTSLKVVS 93 (937)
Q Consensus 25 L~~l~~L~L~~~~L~~L-p~~L~~L~~Le~L~~g~-~L~---------~L~l~vLdLs~n~~le~Lp~~L~~L~~Lk~Ld 93 (937)
...++.|++..+.+..+ |..+..+++|+.|.... .+. .-.+..+++++|...+..|..|+.+++|++|+
T Consensus 25 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 104 (549)
T 2z81_A 25 TAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLN 104 (549)
T ss_dssp CTTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEE
T ss_pred CCCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEE
Confidence 35677888888887766 34566666666655421 111 11345678888876666677788899999999
Q ss_pred ccCCCCCC-CCCCCCCCCCCCcEEEeeCCCC-CccchhhHhhhhhhhhhhhccCCCcccchhccc---------------
Q 002315 94 ALPPPARD-PTPLSLLPFCRLKVLELRGCDL-STSAAKGLLELRHTLEKIICHNSTNALRHVFAS--------------- 156 (937)
Q Consensus 94 Ls~N~Is~-~iP~sLs~L~~L~~LdLS~N~L-s~~lp~~L~~L~~Ll~LlL~~N~L~~L~~l~~~--------------- 156 (937)
|++|.+.+ ..|..|..+++|++|+|++|.+ ....+..|..+++|.++.+.+|.+.........
T Consensus 105 Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~ 184 (549)
T 2z81_A 105 LMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSES 184 (549)
T ss_dssp CTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSBS
T ss_pred CCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhccccCceEecccCcc
Confidence 98888876 3466777888888888888773 333334566666666666666554321100000
Q ss_pred ----------------------chhcc-----------------------------------------------------
Q 002315 157 ----------------------RIVEI----------------------------------------------------- 161 (937)
Q Consensus 157 ----------------------~i~~l----------------------------------------------------- 161 (937)
.+..+
T Consensus 185 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~ 264 (549)
T 2z81_A 185 AFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLN 264 (549)
T ss_dssp TTHHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEESCEEE
T ss_pred cccchhhHhhcccccEEEccCCccccccccccchhhhhhcccceeccccccchhHHHHHHHHhhhhcccccccccccccc
Confidence 00000
Q ss_pred -------------cCC--------------------------CCCCCccEEEccCCcCccchhhc-CCCCCCcEEECCCC
Q 002315 162 -------------KDS--------------------------PQWNRLSFVSCSCNRLVIMDESL-QLLPAVETLDLSRN 201 (937)
Q Consensus 162 -------------~~l--------------------------~~l~~L~~L~Ls~N~Ls~LP~sL-~~L~~L~~LdLs~N 201 (937)
..+ ..+.+|+.|++++|.+..+|..+ ..+++|++|+|++|
T Consensus 265 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~~ip~~~~~~l~~L~~L~Ls~N 344 (549)
T 2z81_A 265 GLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSEN 344 (549)
T ss_dssp CCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSCCCCCCHHHHHHCTTCCEEECCSS
T ss_pred ccccccccchhhhhhhcccccccccccccchhhhcccchhhhhhcccceEEEeccCccccCCHHHHhcCccccEEEccCC
Confidence 000 00134566666666666666655 46888888888888
Q ss_pred CCCCC-----cCcCCCCCCCEEECCCCCCCCccc---ccccccccceecccCccccccc-cCCCCCCCCEEEccCCCCCC
Q 002315 202 KFAKV-----DNLRKCVNLKHLDLGFNNLRSIAA---FSEVSCHIVKLVLRNNALTTLR-GIENLKSLEGLDISYNIIST 272 (937)
Q Consensus 202 ~L~~l-----~~L~~L~~L~~LdLS~N~Lt~L~~---l~~~l~sL~~L~Ls~N~Lt~Lp-~L~~L~sL~~LdLS~N~Ls~ 272 (937)
.+.+. ..+..+++|+.|+|++|.|+.++. ....+++|+.|+|++|+|+.+| .+..+++|++|+|++|.|+.
T Consensus 345 ~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~~~~L~~L~Ls~N~l~~ 424 (549)
T 2z81_A 345 LMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFHPMPDSCQWPEKMRFLNLSSTGIRV 424 (549)
T ss_dssp CCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCCCCCCCSCCCCCTTCCEEECTTSCCSC
T ss_pred ccccccccchhhhhccccCcEEEccCCcccccccchhhhhcCCCCCEEECCCCCCccCChhhcccccccEEECCCCCccc
Confidence 88762 236778888888888888887753 3456688888899888888876 67778888888888888887
Q ss_pred CchhhhhcCCCCCCEEEecCCCCCCCcchhhhHhhhcCCCceeccCCccCC
Q 002315 273 FSELEFLASLPYLLNLWLEGNPLCCSRWYRAQVFSYFAHPAKLKVDGKEIS 323 (937)
Q Consensus 273 l~~l~~L~~L~sL~~L~Ls~NpLt~~~~~r~~~~~~l~~L~~L~LdgN~Is 323 (937)
++. .+ .++|+.|+|++|.++... ..++.|+.|+|++|.++
T Consensus 425 l~~--~~--~~~L~~L~Ls~N~l~~~~-------~~l~~L~~L~Ls~N~l~ 464 (549)
T 2z81_A 425 VKT--CI--PQTLEVLDVSNNNLDSFS-------LFLPRLQELYISRNKLK 464 (549)
T ss_dssp CCT--TS--CTTCSEEECCSSCCSCCC-------CCCTTCCEEECCSSCCS
T ss_pred ccc--hh--cCCceEEECCCCChhhhc-------ccCChhcEEECCCCccC
Confidence 663 11 246666666666665332 24566777777777766
No 44
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.86 E-value=9.4e-22 Score=228.54 Aligned_cols=219 Identities=17% Similarity=0.165 Sum_probs=176.5
Q ss_pred CCCCCcEEEccCCCCCCCCCCCCCCCCCCcEEEeeCCCCCccchhhHhhhhhhhhhhhccCCCcccchhcccchhcccCC
Q 002315 85 LLTSLKVVSALPPPARDPTPLSLLPFCRLKVLELRGCDLSTSAAKGLLELRHTLEKIICHNSTNALRHVFASRIVEIKDS 164 (937)
Q Consensus 85 ~L~~Lk~LdLs~N~Is~~iP~sLs~L~~L~~LdLS~N~Ls~~lp~~L~~L~~Ll~LlL~~N~L~~L~~l~~~~i~~l~~l 164 (937)
.+++|+.|+|++|.+++..|..|..+++|++|+|++|.+++..| +..+++|..|.+++|.+..++.
T Consensus 32 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~~------------ 97 (487)
T 3oja_A 32 SAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELLV------------ 97 (487)
T ss_dssp TGGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEEE------------
T ss_pred cCCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCCC------------
Confidence 34489999999999888888888899999999999999887555 7888888888888887655432
Q ss_pred CCCCCccEEEccCCcCccchhhcCCCCCCcEEECCCCCCCCCc--CcCCCCCCCEEECCCCCCCCccc-cc-ccccccce
Q 002315 165 PQWNRLSFVSCSCNRLVIMDESLQLLPAVETLDLSRNKFAKVD--NLRKCVNLKHLDLGFNNLRSIAA-FS-EVSCHIVK 240 (937)
Q Consensus 165 ~~l~~L~~L~Ls~N~Ls~LP~sL~~L~~L~~LdLs~N~L~~l~--~L~~L~~L~~LdLS~N~Lt~L~~-l~-~~l~sL~~ 240 (937)
.++|+.|++++|.|+.++.. .+++|+.|+|++|.|+.++ .+..+++|+.|+|++|.|+++++ .. ..+++|+.
T Consensus 98 --~~~L~~L~L~~N~l~~~~~~--~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~ 173 (487)
T 3oja_A 98 --GPSIETLHAANNNISRVSCS--RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEH 173 (487)
T ss_dssp --CTTCCEEECCSSCCCCEEEC--CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCE
T ss_pred --CCCcCEEECcCCcCCCCCcc--ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccE
Confidence 25789999999999877643 5688999999999998863 67788999999999999987543 22 35688999
Q ss_pred ecccCccccccccCCCCCCCCEEEccCCCCCCCchhhhhcCCCCCCEEEecCCCCCCCcchhhhHhhhcCCCceeccCCc
Q 002315 241 LVLRNNALTTLRGIENLKSLEGLDISYNIISTFSELEFLASLPYLLNLWLEGNPLCCSRWYRAQVFSYFAHPAKLKVDGK 320 (937)
Q Consensus 241 L~Ls~N~Lt~Lp~L~~L~sL~~LdLS~N~Ls~l~~l~~L~~L~sL~~L~Ls~NpLt~~~~~r~~~~~~l~~L~~L~LdgN 320 (937)
|+|++|.|+.++.+..+++|+.|+|++|.|+++++ .+..+++|+.|+|++|.++..+ ..+..++.|+.++|++|
T Consensus 174 L~Ls~N~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~--~~~~l~~L~~L~Ls~N~l~~lp----~~l~~l~~L~~L~l~~N 247 (487)
T 3oja_A 174 LNLQYNFIYDVKGQVVFAKLKTLDLSSNKLAFMGP--EFQSAAGVTWISLRNNKLVLIE----KALRFSQNLEHFDLRGN 247 (487)
T ss_dssp EECTTSCCCEEECCCCCTTCCEEECCSSCCCEECG--GGGGGTTCSEEECTTSCCCEEC----TTCCCCTTCCEEECTTC
T ss_pred EecCCCccccccccccCCCCCEEECCCCCCCCCCH--hHcCCCCccEEEecCCcCcccc----hhhccCCCCCEEEcCCC
Confidence 99999999988877788999999999999998773 4778889999999999988544 23556788999999999
Q ss_pred cCChhhH
Q 002315 321 EISTREL 327 (937)
Q Consensus 321 ~Is~~e~ 327 (937)
++.|...
T Consensus 248 ~l~c~~~ 254 (487)
T 3oja_A 248 GFHCGTL 254 (487)
T ss_dssp CBCHHHH
T ss_pred CCcCcch
Confidence 9986543
No 45
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.86 E-value=7.2e-22 Score=218.37 Aligned_cols=252 Identities=19% Similarity=0.191 Sum_probs=201.1
Q ss_pred hhcCCcEEEecCCCccchHh-hhhhcccchhccCCCCCcccccccccCCCCCcchHHHHHhcCCCCCcEEEccCCCCCCC
Q 002315 24 LIEGSIVLKLNPAGLHYVQS-RLEALRELERLLAGAPLDYLRAYVSDLGDHRALEQLRRILKLLTSLKVVSALPPPARDP 102 (937)
Q Consensus 24 lL~~l~~L~L~~~~L~~Lp~-~L~~L~~Le~L~~g~~L~~L~l~vLdLs~n~~le~Lp~~L~~L~~Lk~LdLs~N~Is~~ 102 (937)
+...++.|++..+.+..++. .+..+++|+. +++++|...+..+..|.++++|++|+|++|.++..
T Consensus 50 ~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~--------------L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~ 115 (353)
T 2z80_A 50 LTEAVKSLDLSNNRITYISNSDLQRCVNLQA--------------LVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNL 115 (353)
T ss_dssp CCTTCCEEECTTSCCCEECTTTTTTCTTCCE--------------EECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSC
T ss_pred ccccCcEEECCCCcCcccCHHHhccCCCCCE--------------EECCCCccCccCHhhcCCCCCCCEEECCCCcCCcC
Confidence 34578899999999988775 4555554443 45566655554566789999999999999999987
Q ss_pred CCCCCCCCCCCcEEEeeCCCCCccch-hhHhhhhhhhhhhhccCC-CcccchhcccchhcccCCCCCCCccEEEccCCcC
Q 002315 103 TPLSLLPFCRLKVLELRGCDLSTSAA-KGLLELRHTLEKIICHNS-TNALRHVFASRIVEIKDSPQWNRLSFVSCSCNRL 180 (937)
Q Consensus 103 iP~sLs~L~~L~~LdLS~N~Ls~~lp-~~L~~L~~Ll~LlL~~N~-L~~L~~l~~~~i~~l~~l~~l~~L~~L~Ls~N~L 180 (937)
.+..|..+++|++|+|++|.++...+ ..+..+++|..+.+.+|. +..+... .+..+++|+.|++++|.+
T Consensus 116 ~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~---------~~~~l~~L~~L~l~~n~l 186 (353)
T 2z80_A 116 SSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRK---------DFAGLTFLEELEIDASDL 186 (353)
T ss_dssp CHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTT---------TTTTCCEEEEEEEEETTC
T ss_pred CHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHH---------HccCCCCCCEEECCCCCc
Confidence 66669999999999999999987444 478899999999999883 4444321 234678999999999999
Q ss_pred ccc-hhhcCCCCCCcEEECCCCCCCCCc--CcCCCCCCCEEECCCCCCCCcccc----cccccccceecccCccccc---
Q 002315 181 VIM-DESLQLLPAVETLDLSRNKFAKVD--NLRKCVNLKHLDLGFNNLRSIAAF----SEVSCHIVKLVLRNNALTT--- 250 (937)
Q Consensus 181 s~L-P~sL~~L~~L~~LdLs~N~L~~l~--~L~~L~~L~~LdLS~N~Lt~L~~l----~~~l~sL~~L~Ls~N~Lt~--- 250 (937)
..+ |..+..+++|++|++++|.+..++ .+..+++|+.|+|++|.++.++.. ......++.++|+++.+..
T Consensus 187 ~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l 266 (353)
T 2z80_A 187 QSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESL 266 (353)
T ss_dssp CEECTTTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHHHH
T ss_pred CccCHHHHhccccCCeecCCCCccccchhhhhhhcccccEEECCCCccccccccccccccccchhhccccccccccCcch
Confidence 965 778999999999999999998875 345689999999999999986531 1234567777777777765
Q ss_pred --cc-cCCCCCCCCEEEccCCCCCCCchhhhhcCCCCCCEEEecCCCCCCCc
Q 002315 251 --LR-GIENLKSLEGLDISYNIISTFSELEFLASLPYLLNLWLEGNPLCCSR 299 (937)
Q Consensus 251 --Lp-~L~~L~sL~~LdLS~N~Ls~l~~l~~L~~L~sL~~L~Ls~NpLt~~~ 299 (937)
+| .+..+++|+.|+|++|+|+.++. ..+..+++|+.|+|++|++.|.+
T Consensus 267 ~~l~~~l~~l~~L~~L~Ls~N~l~~i~~-~~~~~l~~L~~L~L~~N~~~~~~ 317 (353)
T 2z80_A 267 FQVMKLLNQISGLLELEFSRNQLKSVPD-GIFDRLTSLQKIWLHTNPWDCSC 317 (353)
T ss_dssp HHHHHHHHTCTTCCEEECCSSCCCCCCT-TTTTTCTTCCEEECCSSCBCCCH
T ss_pred hhhHHHHhcccCCCEEECCCCCCCccCH-HHHhcCCCCCEEEeeCCCccCcC
Confidence 44 67889999999999999999874 44689999999999999999886
No 46
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.85 E-value=6.6e-21 Score=222.05 Aligned_cols=136 Identities=19% Similarity=0.191 Sum_probs=96.6
Q ss_pred cCCCCCCcEEECCCCCCCCC---cCcCCCCCCCEEECCCCCCCCcc-cccccccccceecccCccccc--cc-cCCCCCC
Q 002315 187 LQLLPAVETLDLSRNKFAKV---DNLRKCVNLKHLDLGFNNLRSIA-AFSEVSCHIVKLVLRNNALTT--LR-GIENLKS 259 (937)
Q Consensus 187 L~~L~~L~~LdLs~N~L~~l---~~L~~L~~L~~LdLS~N~Lt~L~-~l~~~l~sL~~L~Ls~N~Lt~--Lp-~L~~L~s 259 (937)
+..+++|++|++++|.+..+ ..+..+++|++|+|++|.+..+. ..+..+++|+.|+|++|.++. +| .+..+++
T Consensus 392 ~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~ 471 (570)
T 2z63_A 392 FLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRN 471 (570)
T ss_dssp EETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTT
T ss_pred ccccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccC
Confidence 33444444444444444432 13556667777777777666543 344456788888888888862 54 7788899
Q ss_pred CCEEEccCCCCCCCchhhhhcCCCCCCEEEecCCCCCCCcchhhhHhhhcCCCceeccCCccCChhh
Q 002315 260 LEGLDISYNIISTFSELEFLASLPYLLNLWLEGNPLCCSRWYRAQVFSYFAHPAKLKVDGKEISTRE 326 (937)
Q Consensus 260 L~~LdLS~N~Ls~l~~l~~L~~L~sL~~L~Ls~NpLt~~~~~r~~~~~~l~~L~~L~LdgN~Is~~e 326 (937)
|+.|+|++|.++.+++ ..+..+++|+.|+|++|.++..+ ...+..++.|+.++|++|++++..
T Consensus 472 L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~l~~n~l~~~~---~~~~~~l~~L~~L~l~~N~~~~~~ 534 (570)
T 2z63_A 472 LTFLDLSQCQLEQLSP-TAFNSLSSLQVLNMASNQLKSVP---DGIFDRLTSLQKIWLHTNPWDCSC 534 (570)
T ss_dssp CCEEECTTSCCCEECT-TTTTTCTTCCEEECCSSCCSCCC---TTTTTTCTTCCEEECCSSCBCCCT
T ss_pred CCEEECCCCccccCCh-hhhhcccCCCEEeCCCCcCCCCC---HHHhhcccCCcEEEecCCcccCCC
Confidence 9999999999888743 56788899999999999988654 345667888999999999998765
No 47
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.85 E-value=1.1e-20 Score=204.96 Aligned_cols=202 Identities=24% Similarity=0.193 Sum_probs=168.5
Q ss_pred hcCCCCCcEEEccCCCCCCCCCCCCCCCCCCcEEEeeCCCCCccchhhHhhhhhhhhhhhccCCCcccchhcccchhccc
Q 002315 83 LKLLTSLKVVSALPPPARDPTPLSLLPFCRLKVLELRGCDLSTSAAKGLLELRHTLEKIICHNSTNALRHVFASRIVEIK 162 (937)
Q Consensus 83 L~~L~~Lk~LdLs~N~Is~~iP~sLs~L~~L~~LdLS~N~Ls~~lp~~L~~L~~Ll~LlL~~N~L~~L~~l~~~~i~~l~ 162 (937)
+.++++|+.|++++|.++.. |..+. ++|+.|+|++|.|++..+..|..+++|..+.+.+|.+..++..
T Consensus 6 ~~~l~~l~~l~~~~~~l~~i-p~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~--------- 73 (290)
T 1p9a_G 6 VSKVASHLEVNCDKRNLTAL-PPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD--------- 73 (290)
T ss_dssp EECSTTCCEEECTTSCCSSC-CSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECC---------
T ss_pred ccccCCccEEECCCCCCCcC-CCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCC---------
Confidence 56788999999999998754 55553 7899999999999988888888888888888888877665432
Q ss_pred CCCCCCCccEEEccCCcCccchhhcCCCCCCcEEECCCCCCCCCc--CcCCCCCCCEEECCCCCCCCcccc-cccccccc
Q 002315 163 DSPQWNRLSFVSCSCNRLVIMDESLQLLPAVETLDLSRNKFAKVD--NLRKCVNLKHLDLGFNNLRSIAAF-SEVSCHIV 239 (937)
Q Consensus 163 ~l~~l~~L~~L~Ls~N~Ls~LP~sL~~L~~L~~LdLs~N~L~~l~--~L~~L~~L~~LdLS~N~Lt~L~~l-~~~l~sL~ 239 (937)
..+++|+.|++++|.|..+|..+..+++|++|+|++|+|+.++ .|..+++|+.|+|++|.|+.++.. +..+++|+
T Consensus 74 --~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~ 151 (290)
T 1p9a_G 74 --GTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLE 151 (290)
T ss_dssp --SCCTTCCEEECCSSCCSSCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCC
T ss_pred --CCCCcCCEEECCCCcCCcCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCC
Confidence 3567899999999999999888888999999999999999875 588899999999999999988763 34678899
Q ss_pred eecccCccccccc--cCCCCCCCCEEEccCCCCCCCchhhhhcCCCCCCEEEecCCCCCCCcc
Q 002315 240 KLVLRNNALTTLR--GIENLKSLEGLDISYNIISTFSELEFLASLPYLLNLWLEGNPLCCSRW 300 (937)
Q Consensus 240 ~L~Ls~N~Lt~Lp--~L~~L~sL~~LdLS~N~Ls~l~~l~~L~~L~sL~~L~Ls~NpLt~~~~ 300 (937)
.|+|++|+|+.++ .+..+++|+.|+|++|+|+.+| ..+..+++|+.|+|.+||+.|.+.
T Consensus 152 ~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~ip--~~~~~~~~L~~l~L~~Np~~C~c~ 212 (290)
T 1p9a_G 152 KLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIP--KGFFGSHLLPFAFLHGNPWLCNCE 212 (290)
T ss_dssp EEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCCCCC--TTTTTTCCCSEEECCSCCBCCSGG
T ss_pred EEECCCCcCCccCHHHhcCcCCCCEEECCCCcCCccC--hhhcccccCCeEEeCCCCccCcCc
Confidence 9999999999886 4678899999999999999887 456677789999999999988874
No 48
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.85 E-value=2.7e-21 Score=225.36 Aligned_cols=154 Identities=20% Similarity=0.178 Sum_probs=102.7
Q ss_pred CCCCccEEEccCCcCccchhhcCCCCCCcEEECCCCCCCCCcC---------------------cCCCCCCCEEECCCCC
Q 002315 166 QWNRLSFVSCSCNRLVIMDESLQLLPAVETLDLSRNKFAKVDN---------------------LRKCVNLKHLDLGFNN 224 (937)
Q Consensus 166 ~l~~L~~L~Ls~N~Ls~LP~sL~~L~~L~~LdLs~N~L~~l~~---------------------L~~L~~L~~LdLS~N~ 224 (937)
.+++|+.|++++|.+..+|..+..+ +|+.|++++|.+..++. ...+++|+.|+|++|.
T Consensus 280 ~l~~L~~L~l~~~~l~~l~~~~~~~-~L~~L~l~~n~~~~l~~~~l~~L~~L~l~~n~~~~~~~~~~~~~L~~L~l~~n~ 358 (570)
T 2z63_A 280 CLTNVSSFSLVSVTIERVKDFSYNF-GWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNG 358 (570)
T ss_dssp GGTTCSEEEEESCEECSCCBCCSCC-CCSEEEEESCBCSSCCBCBCSSCCEEEEESCBSCCBCCCCBCTTCCEEECCSSC
T ss_pred CcCcccEEEecCccchhhhhhhccC-CccEEeeccCcccccCcccccccCEEeCcCCccccccccccCCCCCEEeCcCCc
Confidence 3567888888888888887777766 77777777777665432 1345667777777777
Q ss_pred CCCcc---cccccccccceecccCccccccc-cCCCCCCCCEEEccCCCCCCCchhhhhcCCCCCCEEEecCCCCCCCcc
Q 002315 225 LRSIA---AFSEVSCHIVKLVLRNNALTTLR-GIENLKSLEGLDISYNIISTFSELEFLASLPYLLNLWLEGNPLCCSRW 300 (937)
Q Consensus 225 Lt~L~---~l~~~l~sL~~L~Ls~N~Lt~Lp-~L~~L~sL~~LdLS~N~Ls~l~~l~~L~~L~sL~~L~Ls~NpLt~~~~ 300 (937)
++.+. .....+++|+.|+|++|.++.++ .+..+++|+.|++++|.+...++...+..+++|+.|+|++|.+....
T Consensus 359 l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~- 437 (570)
T 2z63_A 359 LSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAF- 437 (570)
T ss_dssp CBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEEEETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECC-
T ss_pred cCccccccccccccCccCEEECCCCccccccccccccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCcccccc-
Confidence 66542 33344567777777777776654 46677777777777777766544345667777777777777765432
Q ss_pred hhhhHhhhcCCCceeccCCccCC
Q 002315 301 YRAQVFSYFAHPAKLKVDGKEIS 323 (937)
Q Consensus 301 ~r~~~~~~l~~L~~L~LdgN~Is 323 (937)
...+..++.|+.|+|.+|.++
T Consensus 438 --~~~~~~l~~L~~L~l~~n~l~ 458 (570)
T 2z63_A 438 --NGIFNGLSSLEVLKMAGNSFQ 458 (570)
T ss_dssp --TTTTTTCTTCCEEECTTCEEG
T ss_pred --hhhhhcCCcCcEEECcCCcCc
Confidence 234556677777777777764
No 49
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.85 E-value=7.8e-21 Score=220.09 Aligned_cols=97 Identities=16% Similarity=0.183 Sum_probs=49.8
Q ss_pred cCCcEEEecCCCccchH-hhhhhcccchhccCCC-CCcc---------cccccccCCCCCcchHHHHHhcCCCCCcEEEc
Q 002315 26 EGSIVLKLNPAGLHYVQ-SRLEALRELERLLAGA-PLDY---------LRAYVSDLGDHRALEQLRRILKLLTSLKVVSA 94 (937)
Q Consensus 26 ~~l~~L~L~~~~L~~Lp-~~L~~L~~Le~L~~g~-~L~~---------L~l~vLdLs~n~~le~Lp~~L~~L~~Lk~LdL 94 (937)
..++.|++..+.+..++ ..+..+++|+.|.... .+.. -.+..+|+++|... .+|.. .+++|++|+|
T Consensus 21 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~--~l~~L~~L~L 97 (520)
T 2z7x_B 21 QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLV-KISCH--PTVNLKHLDL 97 (520)
T ss_dssp TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCCC-EEECC--CCCCCSEEEC
T ss_pred ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCcee-ecCcc--ccCCccEEec
Confidence 56677777777777654 4566666555544311 1110 11223444444322 34433 4555555555
Q ss_pred cCCCCCC-CCCCCCCCCCCCcEEEeeCCCCCc
Q 002315 95 LPPPARD-PTPLSLLPFCRLKVLELRGCDLST 125 (937)
Q Consensus 95 s~N~Is~-~iP~sLs~L~~L~~LdLS~N~Ls~ 125 (937)
++|.+++ .+|..|+.+++|++|+|++|.|++
T Consensus 98 ~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~ 129 (520)
T 2z7x_B 98 SFNAFDALPICKEFGNMSQLKFLGLSTTHLEK 129 (520)
T ss_dssp CSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG
T ss_pred cCCccccccchhhhccCCcceEEEecCcccch
Confidence 5555554 245555555555555555555544
No 50
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.85 E-value=6.1e-21 Score=210.33 Aligned_cols=224 Identities=14% Similarity=0.073 Sum_probs=165.1
Q ss_pred CCCCCcEEEccCCCCCCCCCCCCCCCCCCcEEEeeCCCCCccchhhHhhhhhhhhhhhccCCCcccchhcccchhcccCC
Q 002315 85 LLTSLKVVSALPPPARDPTPLSLLPFCRLKVLELRGCDLSTSAAKGLLELRHTLEKIICHNSTNALRHVFASRIVEIKDS 164 (937)
Q Consensus 85 ~L~~Lk~LdLs~N~Is~~iP~sLs~L~~L~~LdLS~N~Ls~~lp~~L~~L~~Ll~LlL~~N~L~~L~~l~~~~i~~l~~l 164 (937)
..++|+.|+|++|.+. .+|..+..+++|++|+|++|.++ .+|..+..+++|..+.+.+|.+..++..+
T Consensus 79 ~~~~l~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~~lp~~l---------- 146 (328)
T 4fcg_A 79 TQPGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLRALPASI---------- 146 (328)
T ss_dssp TSTTCCEEEEESSCCS-SCCSCGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCCCCCGGG----------
T ss_pred cccceeEEEccCCCch-hcChhhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccccCcHHH----------
Confidence 3577888888888877 55777777888888888888887 57777788888888888887766554432
Q ss_pred CCCCCccEEEccCCcC-ccchhhcCC---------CCCCcEEECCCCCCCCCc-CcCCCCCCCEEECCCCCCCCcccccc
Q 002315 165 PQWNRLSFVSCSCNRL-VIMDESLQL---------LPAVETLDLSRNKFAKVD-NLRKCVNLKHLDLGFNNLRSIAAFSE 233 (937)
Q Consensus 165 ~~l~~L~~L~Ls~N~L-s~LP~sL~~---------L~~L~~LdLs~N~L~~l~-~L~~L~~L~~LdLS~N~Lt~L~~l~~ 233 (937)
..+++|++|++++|.+ ..+|..+.. +++|++|+|++|.|+.++ .+..+++|++|+|++|.++.++....
T Consensus 147 ~~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~N~l~~l~~~l~ 226 (328)
T 4fcg_A 147 ASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSPLSALGPAIH 226 (328)
T ss_dssp GGCTTCCEEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCCCCCGGGGGCTTCCEEEEESSCCCCCCGGGG
T ss_pred hcCcCCCEEECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcCcchHhhcCCCCCCEEEccCCCCCcCchhhc
Confidence 2456788888888544 466665543 888888888888888775 57788888888888888888877666
Q ss_pred cccccceecccCccccc-cc-cCCCCCCCCEEEccCCCCCCCchhhhhcCCCCCCEEEecCCCCCCCcchhhhHhhhcCC
Q 002315 234 VSCHIVKLVLRNNALTT-LR-GIENLKSLEGLDISYNIISTFSELEFLASLPYLLNLWLEGNPLCCSRWYRAQVFSYFAH 311 (937)
Q Consensus 234 ~l~sL~~L~Ls~N~Lt~-Lp-~L~~L~sL~~LdLS~N~Ls~l~~l~~L~~L~sL~~L~Ls~NpLt~~~~~r~~~~~~l~~ 311 (937)
.+++|+.|+|++|.+.. +| .+..+++|+.|+|++|.+....+ ..+..+++|+.|+|++|++...- +..+..++.
T Consensus 227 ~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p-~~~~~l~~L~~L~L~~n~~~~~i---P~~l~~L~~ 302 (328)
T 4fcg_A 227 HLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLP-LDIHRLTQLEKLDLRGCVNLSRL---PSLIAQLPA 302 (328)
T ss_dssp GCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCC-TTGGGCTTCCEEECTTCTTCCCC---CGGGGGSCT
T ss_pred cCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcc-hhhhcCCCCCEEeCCCCCchhhc---cHHHhhccC
Confidence 77888888888877665 44 67788888888888876655332 45778888888888888776442 245667788
Q ss_pred CceeccCCccCCh
Q 002315 312 PAKLKVDGKEIST 324 (937)
Q Consensus 312 L~~L~LdgN~Is~ 324 (937)
++.+.+..+.+..
T Consensus 303 L~~l~l~~~~~~~ 315 (328)
T 4fcg_A 303 NCIILVPPHLQAQ 315 (328)
T ss_dssp TCEEECCGGGSCC
T ss_pred ceEEeCCHHHHHH
Confidence 8888888776653
No 51
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.85 E-value=3.7e-22 Score=218.13 Aligned_cols=229 Identities=16% Similarity=0.151 Sum_probs=188.3
Q ss_pred cccccCCCCCcchHHHHHhcCCCCCcEEEccCCCCCCCCCCCCCCCCCCcEEEeeCCCCCccchhhHhhhhhhhhhhhcc
Q 002315 65 AYVSDLGDHRALEQLRRILKLLTSLKVVSALPPPARDPTPLSLLPFCRLKVLELRGCDLSTSAAKGLLELRHTLEKIICH 144 (937)
Q Consensus 65 l~vLdLs~n~~le~Lp~~L~~L~~Lk~LdLs~N~Is~~iP~sLs~L~~L~~LdLS~N~Ls~~lp~~L~~L~~Ll~LlL~~ 144 (937)
+..+++++|......|..|..+++|+.|+|++|.+++..| |..+++|++|+|++|.|++..+ .+++..+.+.+
T Consensus 36 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n~l~~l~~-----~~~L~~L~l~~ 108 (317)
T 3o53_A 36 VKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELLV-----GPSIETLHAAN 108 (317)
T ss_dssp CSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECCSSEEEEEEE-----CTTCCEEECCS
T ss_pred CCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECcCCccccccC-----CCCcCEEECCC
Confidence 3446778877666667899999999999999999987654 8999999999999999987432 36788888999
Q ss_pred CCCcccchhcccchhcccCCCCCCCccEEEccCCcCccchh-hcCCCCCCcEEECCCCCCCCCc--Cc-CCCCCCCEEEC
Q 002315 145 NSTNALRHVFASRIVEIKDSPQWNRLSFVSCSCNRLVIMDE-SLQLLPAVETLDLSRNKFAKVD--NL-RKCVNLKHLDL 220 (937)
Q Consensus 145 N~L~~L~~l~~~~i~~l~~l~~l~~L~~L~Ls~N~Ls~LP~-sL~~L~~L~~LdLs~N~L~~l~--~L-~~L~~L~~LdL 220 (937)
|.+..+... .+++|+.|++++|.++.++. .+..+++|++|+|++|.+..++ .+ ..+++|++|+|
T Consensus 109 n~l~~~~~~------------~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L 176 (317)
T 3o53_A 109 NNISRVSCS------------RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNL 176 (317)
T ss_dssp SCCSEEEEC------------CCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEEC
T ss_pred CccCCcCcc------------ccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEEC
Confidence 987665431 35689999999999997765 7888999999999999999863 44 47899999999
Q ss_pred CCCCCCCcccccccccccceecccCccccccc-cCCCCCCCCEEEccCCCCCCCchhhhhcCCCCCCEEEecCCCCCCCc
Q 002315 221 GFNNLRSIAAFSEVSCHIVKLVLRNNALTTLR-GIENLKSLEGLDISYNIISTFSELEFLASLPYLLNLWLEGNPLCCSR 299 (937)
Q Consensus 221 S~N~Lt~L~~l~~~l~sL~~L~Ls~N~Lt~Lp-~L~~L~sL~~LdLS~N~Ls~l~~l~~L~~L~sL~~L~Ls~NpLt~~~ 299 (937)
++|.|+.++.... +++|+.|+|++|+|+.++ .+..+++|+.|+|++|.|+.++ ..+..+++|+.|+|++|++.|..
T Consensus 177 ~~N~l~~~~~~~~-l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~L~~N~l~~l~--~~~~~l~~L~~L~l~~N~~~~~~ 253 (317)
T 3o53_A 177 QYNFIYDVKGQVV-FAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLVLIE--KALRFSQNLEHFDLRGNGFHCGT 253 (317)
T ss_dssp TTSCCCEEECCCC-CTTCCEEECCSSCCCEECGGGGGGTTCSEEECTTSCCCEEC--TTCCCCTTCCEEECTTCCCBHHH
T ss_pred CCCcCcccccccc-cccCCEEECCCCcCCcchhhhcccCcccEEECcCCcccchh--hHhhcCCCCCEEEccCCCccCcC
Confidence 9999998866543 689999999999999985 7889999999999999999987 45889999999999999998553
Q ss_pred chhhhHhhhcCCCceecc
Q 002315 300 WYRAQVFSYFAHPAKLKV 317 (937)
Q Consensus 300 ~~r~~~~~~l~~L~~L~L 317 (937)
....+..++.++.+.+
T Consensus 254 --~~~~~~~~~~L~~l~l 269 (317)
T 3o53_A 254 --LRDFFSKNQRVQTVAK 269 (317)
T ss_dssp --HHHHHHTCHHHHHHHH
T ss_pred --HHHHHhccccceEEEC
Confidence 2344555555555544
No 52
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.85 E-value=2.1e-20 Score=219.09 Aligned_cols=118 Identities=19% Similarity=0.150 Sum_probs=92.1
Q ss_pred cCCCCCCCEEECCCCCCC-C-cccccccccccceecccCccccccc--cCCCCCCCCEEEccCCCCCCCchhhhhcCCCC
Q 002315 209 LRKCVNLKHLDLGFNNLR-S-IAAFSEVSCHIVKLVLRNNALTTLR--GIENLKSLEGLDISYNIISTFSELEFLASLPY 284 (937)
Q Consensus 209 L~~L~~L~~LdLS~N~Lt-~-L~~l~~~l~sL~~L~Ls~N~Lt~Lp--~L~~L~sL~~LdLS~N~Ls~l~~l~~L~~L~s 284 (937)
+..++.|+.|+|++|.+. . ++..+..+++|+.|+|++|+|+.++ .|..+++|+.|+|++|+|+.+++ ..+..+++
T Consensus 465 ~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~-~~~~~l~~ 543 (635)
T 4g8a_A 465 FNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDT-FPYKCLNS 543 (635)
T ss_dssp TTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCBCCC-GGGTTCTT
T ss_pred cccchhhhhhhhhhcccccccCchhhhhccccCEEECCCCccCCcChHHHcCCCCCCEEECCCCcCCCCCh-hHHhCCCC
Confidence 344566666777666533 2 3344556789999999999999974 68999999999999999999875 66889999
Q ss_pred CCEEEecCCCCCCCcchhhhHhhhc-CCCceeccCCccCChhhHHHH
Q 002315 285 LLNLWLEGNPLCCSRWYRAQVFSYF-AHPAKLKVDGKEISTRELWER 330 (937)
Q Consensus 285 L~~L~Ls~NpLt~~~~~r~~~~~~l-~~L~~L~LdgN~Is~~e~~~~ 330 (937)
|+.|+|++|.|+..+ +..+..+ +.|+.|+|++||+.|.+...+
T Consensus 544 L~~L~Ls~N~l~~~~---~~~l~~l~~~L~~L~L~~Np~~C~C~~~~ 587 (635)
T 4g8a_A 544 LQVLDYSLNHIMTSK---KQELQHFPSSLAFLNLTQNDFACTCEHQS 587 (635)
T ss_dssp CCEEECTTSCCCBCC---SSCTTCCCTTCCEEECTTCCBCCSGGGHH
T ss_pred CCEEECCCCcCCCCC---HHHHHhhhCcCCEEEeeCCCCcccCCcHH
Confidence 999999999998654 2344455 579999999999998875443
No 53
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.85 E-value=1.9e-21 Score=214.41 Aligned_cols=230 Identities=16% Similarity=0.123 Sum_probs=185.5
Q ss_pred cccccCCCCCcchHHHHHhcCCCCCcEEEccCCCCCCCCCCCCCCCCCCcEEEeeCCCCCccchhhHhhhhhhhhhhhcc
Q 002315 65 AYVSDLGDHRALEQLRRILKLLTSLKVVSALPPPARDPTPLSLLPFCRLKVLELRGCDLSTSAAKGLLELRHTLEKIICH 144 (937)
Q Consensus 65 l~vLdLs~n~~le~Lp~~L~~L~~Lk~LdLs~N~Is~~iP~sLs~L~~L~~LdLS~N~Ls~~lp~~L~~L~~Ll~LlL~~ 144 (937)
+..++++++.. ..+|..+.++++|++|+|++|.+. .+|..|+.+++|++|+|++|.++ .+|..+..+++|..+.+.+
T Consensus 83 l~~L~L~~n~l-~~lp~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L~~ 159 (328)
T 4fcg_A 83 RVALELRSVPL-PQFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIRA 159 (328)
T ss_dssp CCEEEEESSCC-SSCCSCGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEEEEE
T ss_pred eeEEEccCCCc-hhcChhhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEECCC
Confidence 34466666654 467887888999999999999998 77889999999999999999998 5788899999999999988
Q ss_pred CC-CcccchhcccchhcccCCCCCCCccEEEccCCcCccchhhcCCCCCCcEEECCCCCCCCCc-CcCCCCCCCEEECCC
Q 002315 145 NS-TNALRHVFASRIVEIKDSPQWNRLSFVSCSCNRLVIMDESLQLLPAVETLDLSRNKFAKVD-NLRKCVNLKHLDLGF 222 (937)
Q Consensus 145 N~-L~~L~~l~~~~i~~l~~l~~l~~L~~L~Ls~N~Ls~LP~sL~~L~~L~~LdLs~N~L~~l~-~L~~L~~L~~LdLS~ 222 (937)
|+ +..++..+.. ......+..+++|++|++++|.|+.+|..+..+++|++|+|++|.+..++ .+..+++|+.|+|++
T Consensus 160 n~~~~~~p~~~~~-~~~~~~~~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~N~l~~l~~~l~~l~~L~~L~Ls~ 238 (328)
T 4fcg_A 160 CPELTELPEPLAS-TDASGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSPLSALGPAIHHLPKLEELDLRG 238 (328)
T ss_dssp ETTCCCCCSCSEE-EC-CCCEEESTTCCEEEEEEECCCCCCGGGGGCTTCCEEEEESSCCCCCCGGGGGCTTCCEEECTT
T ss_pred CCCccccChhHhh-ccchhhhccCCCCCEEECcCCCcCcchHhhcCCCCCCEEEccCCCCCcCchhhccCCCCCEEECcC
Confidence 64 3333332211 00011123478999999999999999999999999999999999999975 788999999999999
Q ss_pred CCCCC-cccccccccccceecccCccccc-cc-cCCCCCCCCEEEccCCCCCCCchhhhhcCCCCCCEEEecCCCCCCCc
Q 002315 223 NNLRS-IAAFSEVSCHIVKLVLRNNALTT-LR-GIENLKSLEGLDISYNIISTFSELEFLASLPYLLNLWLEGNPLCCSR 299 (937)
Q Consensus 223 N~Lt~-L~~l~~~l~sL~~L~Ls~N~Lt~-Lp-~L~~L~sL~~LdLS~N~Ls~l~~l~~L~~L~sL~~L~Ls~NpLt~~~ 299 (937)
|.+.+ ++..+..+++|+.|+|++|.+.. +| .+..+++|+.|+|++|.+.+..+ ..+..+++|+.+.+..|.+....
T Consensus 239 n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP-~~l~~L~~L~~l~l~~~~~~~l~ 317 (328)
T 4fcg_A 239 CTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLP-SLIAQLPANCIILVPPHLQAQLD 317 (328)
T ss_dssp CTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCC-GGGGGSCTTCEEECCGGGSCC--
T ss_pred CcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhcc-HHHhhccCceEEeCCHHHHHHHh
Confidence 88765 55566778999999999987665 55 78999999999999988765332 77999999999999988776443
No 54
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.85 E-value=2.4e-20 Score=199.85 Aligned_cols=226 Identities=17% Similarity=0.146 Sum_probs=192.3
Q ss_pred CcEEEccCCCCCCCCCCCCCCCCCCcEEEeeCCCCCccchhhHhhhhhhhhhhhccCCCcccchhcccchhcccCCCCCC
Q 002315 89 LKVVSALPPPARDPTPLSLLPFCRLKVLELRGCDLSTSAAKGLLELRHTLEKIICHNSTNALRHVFASRIVEIKDSPQWN 168 (937)
Q Consensus 89 Lk~LdLs~N~Is~~iP~sLs~L~~L~~LdLS~N~Ls~~lp~~L~~L~~Ll~LlL~~N~L~~L~~l~~~~i~~l~~l~~l~ 168 (937)
-+.++++++.++.. |..+ .++|+.|+|++|.++...+..|..++++..+.+.+|.+..+... .+..++
T Consensus 13 ~~~~~c~~~~l~~i-p~~~--~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~---------~~~~l~ 80 (285)
T 1ozn_A 13 KVTTSCPQQGLQAV-PVGI--PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAA---------AFTGLA 80 (285)
T ss_dssp SCEEECCSSCCSSC-CTTC--CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTT---------TTTTCT
T ss_pred CeEEEcCcCCcccC-CcCC--CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHh---------hcCCcc
Confidence 36788888888754 5544 47999999999999998778899999999999999987765332 124678
Q ss_pred CccEEEccCCc-Cccc-hhhcCCCCCCcEEECCCCCCCCCc--CcCCCCCCCEEECCCCCCCCcccc-cccccccceecc
Q 002315 169 RLSFVSCSCNR-LVIM-DESLQLLPAVETLDLSRNKFAKVD--NLRKCVNLKHLDLGFNNLRSIAAF-SEVSCHIVKLVL 243 (937)
Q Consensus 169 ~L~~L~Ls~N~-Ls~L-P~sL~~L~~L~~LdLs~N~L~~l~--~L~~L~~L~~LdLS~N~Lt~L~~l-~~~l~sL~~L~L 243 (937)
+|++|++++|. +..+ |..+..+++|++|+|++|.+..++ .+..+++|++|+|++|.++.++.. +..+++|+.|+|
T Consensus 81 ~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 160 (285)
T 1ozn_A 81 LLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFL 160 (285)
T ss_dssp TCCEEECCSCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCEEeCCCCCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEEC
Confidence 99999999997 8877 568999999999999999999874 588999999999999999988763 556799999999
Q ss_pred cCccccccc--cCCCCCCCCEEEccCCCCCCCchhhhhcCCCCCCEEEecCCCCCCCcchhhhHhhhcCCCceeccCCcc
Q 002315 244 RNNALTTLR--GIENLKSLEGLDISYNIISTFSELEFLASLPYLLNLWLEGNPLCCSRWYRAQVFSYFAHPAKLKVDGKE 321 (937)
Q Consensus 244 s~N~Lt~Lp--~L~~L~sL~~LdLS~N~Ls~l~~l~~L~~L~sL~~L~Ls~NpLt~~~~~r~~~~~~l~~L~~L~LdgN~ 321 (937)
++|+|+.++ .+..+++|+.|+|++|.|+.+.+ ..+..+++|+.|+|++|.++..+ ...+..++.|+.++|.+|+
T Consensus 161 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~l~~n~l~~~~---~~~~~~l~~L~~L~l~~N~ 236 (285)
T 1ozn_A 161 HGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHP-HAFRDLGRLMTLYLFANNLSALP---TEALAPLRALQYLRLNDNP 236 (285)
T ss_dssp CSSCCCEECTTTTTTCTTCCEEECCSSCCCEECT-TTTTTCTTCCEEECCSSCCSCCC---HHHHTTCTTCCEEECCSSC
T ss_pred CCCcccccCHHHhcCccccCEEECCCCcccccCH-hHccCcccccEeeCCCCcCCcCC---HHHcccCcccCEEeccCCC
Confidence 999999986 48899999999999999998754 67889999999999999998654 3557789999999999999
Q ss_pred CChhhHHHH
Q 002315 322 ISTRELWER 330 (937)
Q Consensus 322 Is~~e~~~~ 330 (937)
+.+......
T Consensus 237 ~~c~~~~~~ 245 (285)
T 1ozn_A 237 WVCDCRARP 245 (285)
T ss_dssp EECSGGGHH
T ss_pred ccCCCCcHH
Confidence 998765443
No 55
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.84 E-value=8.7e-22 Score=228.83 Aligned_cols=236 Identities=17% Similarity=0.171 Sum_probs=191.9
Q ss_pred EEecCCCccchHhhhhhcccchhccCCCCCcccccccccCCCCCcchHHHHHhcCCCCCcEEEccCCCCCCCCCCCCCCC
Q 002315 31 LKLNPAGLHYVQSRLEALRELERLLAGAPLDYLRAYVSDLGDHRALEQLRRILKLLTSLKVVSALPPPARDPTPLSLLPF 110 (937)
Q Consensus 31 L~L~~~~L~~Lp~~L~~L~~Le~L~~g~~L~~L~l~vLdLs~n~~le~Lp~~L~~L~~Lk~LdLs~N~Is~~iP~sLs~L 110 (937)
+.+.......+|..+..+.. ..-.+..+++++|......|..|..+++|++|+|++|.+++..| |..+
T Consensus 12 ~~~~~~~~~~l~~~l~~l~~----------~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l 79 (487)
T 3oja_A 12 YKIEKVTDSSLKQALASLRQ----------SAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESL 79 (487)
T ss_dssp EEEESCCTTTHHHHHHTTST----------TGGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTC
T ss_pred eecccCchhhhHHHHHHhcc----------cCCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccC
Confidence 34555555566666654431 01124457778877666667789999999999999999987755 9999
Q ss_pred CCCcEEEeeCCCCCccchhhHhhhhhhhhhhhccCCCcccchhcccchhcccCCCCCCCccEEEccCCcCccc-hhhcCC
Q 002315 111 CRLKVLELRGCDLSTSAAKGLLELRHTLEKIICHNSTNALRHVFASRIVEIKDSPQWNRLSFVSCSCNRLVIM-DESLQL 189 (937)
Q Consensus 111 ~~L~~LdLS~N~Ls~~lp~~L~~L~~Ll~LlL~~N~L~~L~~l~~~~i~~l~~l~~l~~L~~L~Ls~N~Ls~L-P~sL~~ 189 (937)
++|++|+|++|.|++..+ .++|..+.+.+|.+..+... .+++|+.|+|++|.|+.+ |..+..
T Consensus 80 ~~L~~L~Ls~N~l~~l~~-----~~~L~~L~L~~N~l~~~~~~------------~l~~L~~L~L~~N~l~~~~~~~~~~ 142 (487)
T 3oja_A 80 STLRTLDLNNNYVQELLV-----GPSIETLHAANNNISRVSCS------------RGQGKKNIYLANNKITMLRDLDEGC 142 (487)
T ss_dssp TTCCEEECCSSEEEEEEE-----CTTCCEEECCSSCCCCEEEC------------CCSSCEEEECCSSCCCSGGGBCGGG
T ss_pred CCCCEEEecCCcCCCCCC-----CCCcCEEECcCCcCCCCCcc------------ccCCCCEEECCCCCCCCCCchhhcC
Confidence 999999999999987443 26788888999987665431 356899999999999966 457889
Q ss_pred CCCCcEEECCCCCCCCC--cCcC-CCCCCCEEECCCCCCCCcccccccccccceecccCccccccc-cCCCCCCCCEEEc
Q 002315 190 LPAVETLDLSRNKFAKV--DNLR-KCVNLKHLDLGFNNLRSIAAFSEVSCHIVKLVLRNNALTTLR-GIENLKSLEGLDI 265 (937)
Q Consensus 190 L~~L~~LdLs~N~L~~l--~~L~-~L~~L~~LdLS~N~Lt~L~~l~~~l~sL~~L~Ls~N~Lt~Lp-~L~~L~sL~~LdL 265 (937)
+++|+.|+|++|.|+.+ ..+. .+++|+.|+|++|.|+.++... .+++|+.|+|++|.|+.++ .+..+++|+.|+|
T Consensus 143 l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~~~~~-~l~~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~L 221 (487)
T 3oja_A 143 RSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQV-VFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISL 221 (487)
T ss_dssp GSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEECCC-CCTTCCEEECCSSCCCEECGGGGGGTTCSEEEC
T ss_pred CCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCccccccccc-cCCCCCEEECCCCCCCCCCHhHcCCCCccEEEe
Confidence 99999999999999985 2554 7899999999999999987655 3689999999999999975 7889999999999
Q ss_pred cCCCCCCCchhhhhcCCCCCCEEEecCCCCCCC
Q 002315 266 SYNIISTFSELEFLASLPYLLNLWLEGNPLCCS 298 (937)
Q Consensus 266 S~N~Ls~l~~l~~L~~L~sL~~L~Ls~NpLt~~ 298 (937)
++|.|+.+| ..+..+++|+.|+|++|++.|.
T Consensus 222 s~N~l~~lp--~~l~~l~~L~~L~l~~N~l~c~ 252 (487)
T 3oja_A 222 RNNKLVLIE--KALRFSQNLEHFDLRGNGFHCG 252 (487)
T ss_dssp TTSCCCEEC--TTCCCCTTCCEEECTTCCBCHH
T ss_pred cCCcCcccc--hhhccCCCCCEEEcCCCCCcCc
Confidence 999999987 4588899999999999999855
No 56
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.84 E-value=3.3e-21 Score=210.15 Aligned_cols=202 Identities=20% Similarity=0.184 Sum_probs=137.3
Q ss_pred CCCCCcEEEccCCCCCCCCCCCC--CCCCCCcEEEeeCCCCCccchhhHhhhhhhhhhhhccCCCcccchhcccchhccc
Q 002315 85 LLTSLKVVSALPPPARDPTPLSL--LPFCRLKVLELRGCDLSTSAAKGLLELRHTLEKIICHNSTNALRHVFASRIVEIK 162 (937)
Q Consensus 85 ~L~~Lk~LdLs~N~Is~~iP~sL--s~L~~L~~LdLS~N~Ls~~lp~~L~~L~~Ll~LlL~~N~L~~L~~l~~~~i~~l~ 162 (937)
++++|++|+|++|.+++.+|..+ ..+++|++|+|++|.+++. |..+..+...
T Consensus 93 ~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~------------------------- 146 (312)
T 1wwl_A 93 GISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATR-DAWLAELQQW------------------------- 146 (312)
T ss_dssp TTSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSS-SSHHHHHHTT-------------------------
T ss_pred CcCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcch-hHHHHHHHHh-------------------------
Confidence 79999999999999998888876 8999999999999999986 7777776310
Q ss_pred CCCCCCCccEEEccCCcCccch-hhcCCCCCCcEEECCCCCCCCC----cC--cCCCCCCCEEECCCCCCCCccc----c
Q 002315 163 DSPQWNRLSFVSCSCNRLVIMD-ESLQLLPAVETLDLSRNKFAKV----DN--LRKCVNLKHLDLGFNNLRSIAA----F 231 (937)
Q Consensus 163 ~l~~l~~L~~L~Ls~N~Ls~LP-~sL~~L~~L~~LdLs~N~L~~l----~~--L~~L~~L~~LdLS~N~Lt~L~~----l 231 (937)
.+++|++|++++|.|..++ ..+..+++|++|+|++|++.+. +. +..+++|++|+|++|.|+.++. .
T Consensus 147 ---~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~ 223 (312)
T 1wwl_A 147 ---LKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSAL 223 (312)
T ss_dssp ---CCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHH
T ss_pred ---hcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHH
Confidence 1246677777777776555 4666777777777777765541 12 2666777777777777765432 1
Q ss_pred cccccccceecccCcccccc---ccCCCCCCCCEEEccCCCCCCCchhhhhcCCCCCCEEEecCCCCCCCcchhhhHhhh
Q 002315 232 SEVSCHIVKLVLRNNALTTL---RGIENLKSLEGLDISYNIISTFSELEFLASLPYLLNLWLEGNPLCCSRWYRAQVFSY 308 (937)
Q Consensus 232 ~~~l~sL~~L~Ls~N~Lt~L---p~L~~L~sL~~LdLS~N~Ls~l~~l~~L~~L~sL~~L~Ls~NpLt~~~~~r~~~~~~ 308 (937)
...+++|+.|+|++|.|+.. +.+..+++|++|+|++|.|+.+|. .+. ++|+.|+|++|+++..+. +..
T Consensus 224 ~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~~ip~--~~~--~~L~~L~Ls~N~l~~~p~-----~~~ 294 (312)
T 1wwl_A 224 AAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQVPK--GLP--AKLSVLDLSYNRLDRNPS-----PDE 294 (312)
T ss_dssp HHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCSSCCS--SCC--SEEEEEECCSSCCCSCCC-----TTT
T ss_pred HhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccChhhh--hcc--CCceEEECCCCCCCCChh-----Hhh
Confidence 22346677777777777663 244556677777777777776652 222 567777777777765431 445
Q ss_pred cCCCceeccCCccCCh
Q 002315 309 FAHPAKLKVDGKEIST 324 (937)
Q Consensus 309 l~~L~~L~LdgN~Is~ 324 (937)
++.|+.++|++|+++.
T Consensus 295 l~~L~~L~L~~N~l~~ 310 (312)
T 1wwl_A 295 LPQVGNLSLKGNPFLD 310 (312)
T ss_dssp SCEEEEEECTTCTTTC
T ss_pred CCCCCEEeccCCCCCC
Confidence 6667777777777654
No 57
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.84 E-value=7.9e-21 Score=202.64 Aligned_cols=203 Identities=23% Similarity=0.316 Sum_probs=144.4
Q ss_pred CCCcEEEccCCCCCCCCCCCCCCCCCCcEEEeeCCCCCccchhhHhhhhhhhhhhhccCCCcccchhcccchhcccCCCC
Q 002315 87 TSLKVVSALPPPARDPTPLSLLPFCRLKVLELRGCDLSTSAAKGLLELRHTLEKIICHNSTNALRHVFASRIVEIKDSPQ 166 (937)
Q Consensus 87 ~~Lk~LdLs~N~Is~~iP~sLs~L~~L~~LdLS~N~Ls~~lp~~L~~L~~Ll~LlL~~N~L~~L~~l~~~~i~~l~~l~~ 166 (937)
++|+.|+|++|.+++..+..|..+++|++|+|++|.++...+..|..+++|..+.+.+|.+..+... .+..
T Consensus 28 ~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~---------~~~~ 98 (276)
T 2z62_A 28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALG---------AFSG 98 (276)
T ss_dssp TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTT---------TTTT
T ss_pred CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChh---------hhcC
Confidence 4678888888888777666777888888888888888776666666666666666666655444321 1234
Q ss_pred CCCccEEEccCCcCccchh-hcCCCCCCcEEECCCCCCCCC--c-CcCCCCCCCEEECCCCCCCCccc-ccccccccc--
Q 002315 167 WNRLSFVSCSCNRLVIMDE-SLQLLPAVETLDLSRNKFAKV--D-NLRKCVNLKHLDLGFNNLRSIAA-FSEVSCHIV-- 239 (937)
Q Consensus 167 l~~L~~L~Ls~N~Ls~LP~-sL~~L~~L~~LdLs~N~L~~l--~-~L~~L~~L~~LdLS~N~Lt~L~~-l~~~l~sL~-- 239 (937)
+++|++|++++|.+..++. .+..+++|++|++++|.+..+ + .+..+++|+.|+|++|.|+.++. ....++.|+
T Consensus 99 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l 178 (276)
T 2z62_A 99 LSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLL 178 (276)
T ss_dssp CTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTC
T ss_pred CccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhcccc
Confidence 5678888888888876655 577788888888888888763 3 67777888888888888877653 333344555
Q ss_pred --eecccCccccccc-cCCCCCCCCEEEccCCCCCCCchhhhhcCCCCCCEEEecCCCCCCCc
Q 002315 240 --KLVLRNNALTTLR-GIENLKSLEGLDISYNIISTFSELEFLASLPYLLNLWLEGNPLCCSR 299 (937)
Q Consensus 240 --~L~Ls~N~Lt~Lp-~L~~L~sL~~LdLS~N~Ls~l~~l~~L~~L~sL~~L~Ls~NpLt~~~ 299 (937)
.|++++|.|+.++ ......+|+.|+|++|.|+.++. ..+..+++|+.|+|++|++.|.+
T Consensus 179 ~l~L~ls~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~l~~N~~~c~c 240 (276)
T 2z62_A 179 NLSLDLSLNPMNFIQPGAFKEIRLKELALDTNQLKSVPD-GIFDRLTSLQKIWLHTNPWDCSC 240 (276)
T ss_dssp CEEEECCSSCCCEECTTSSCSCCEEEEECCSSCCSCCCT-TTTTTCCSCCEEECCSSCBCCCT
T ss_pred ceeeecCCCcccccCccccCCCcccEEECCCCceeecCH-hHhcccccccEEEccCCcccccC
Confidence 7788888887764 44445578888888888887764 45677888888888888888775
No 58
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.84 E-value=2.5e-20 Score=229.92 Aligned_cols=291 Identities=18% Similarity=0.134 Sum_probs=193.7
Q ss_pred hhcCCcEEEecCCCccch-HhhhhhcccchhccCCCC----------C-cccccccccCCCCCcchHHHHHhcCCCCCcE
Q 002315 24 LIEGSIVLKLNPAGLHYV-QSRLEALRELERLLAGAP----------L-DYLRAYVSDLGDHRALEQLRRILKLLTSLKV 91 (937)
Q Consensus 24 lL~~l~~L~L~~~~L~~L-p~~L~~L~~Le~L~~g~~----------L-~~L~l~vLdLs~n~~le~Lp~~L~~L~~Lk~ 91 (937)
+...++.|++..+.+..+ |..+..+.+|+.|....+ + ..-.+..++|++|......|..|.++++|++
T Consensus 22 lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~ 101 (844)
T 3j0a_A 22 VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFE 101 (844)
T ss_dssp SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCC
T ss_pred CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCE
Confidence 556778888888888766 556677777766655332 1 1122456788888776666888888999999
Q ss_pred EEccCCCCCCCCCCC--CCCCCCCcEEEeeCCCCCccch-hhHhhhhhhhhhhhccCCCcccchhcccch--hccc----
Q 002315 92 VSALPPPARDPTPLS--LLPFCRLKVLELRGCDLSTSAA-KGLLELRHTLEKIICHNSTNALRHVFASRI--VEIK---- 162 (937)
Q Consensus 92 LdLs~N~Is~~iP~s--Ls~L~~L~~LdLS~N~Ls~~lp-~~L~~L~~Ll~LlL~~N~L~~L~~l~~~~i--~~l~---- 162 (937)
|+|++|.+.+.+|.. |..+++|++|+|++|.+++..+ ..|..+++|.++.+.+|.+..+.......+ ..+.
T Consensus 102 L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L 181 (844)
T 3j0a_A 102 LRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSL 181 (844)
T ss_dssp EECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCCCEE
T ss_pred eeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCCccceEEC
Confidence 999888888766654 8888999999999998887544 578888888888888887654322111111 0000
Q ss_pred -----------CCCCCC------CccEEEccCCcCc-cchhhc------------------------------------C
Q 002315 163 -----------DSPQWN------RLSFVSCSCNRLV-IMDESL------------------------------------Q 188 (937)
Q Consensus 163 -----------~l~~l~------~L~~L~Ls~N~Ls-~LP~sL------------------------------------~ 188 (937)
.+..+. .|+.|++++|.+. .+|..+ .
T Consensus 182 ~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~ 261 (844)
T 3j0a_A 182 AANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFA 261 (844)
T ss_dssp CCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTT
T ss_pred CCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccccCCCChhhhh
Confidence 011111 3777777777654 222111 1
Q ss_pred C--CCCCcEEECCCCCCCCC--cCcCCCCCCCEEECCCCCCCCccc-ccccccccceecccCcccccc-c-cCCCCCCCC
Q 002315 189 L--LPAVETLDLSRNKFAKV--DNLRKCVNLKHLDLGFNNLRSIAA-FSEVSCHIVKLVLRNNALTTL-R-GIENLKSLE 261 (937)
Q Consensus 189 ~--L~~L~~LdLs~N~L~~l--~~L~~L~~L~~LdLS~N~Lt~L~~-l~~~l~sL~~L~Ls~N~Lt~L-p-~L~~L~sL~ 261 (937)
. .++|+.|+|++|.+..+ ..|..+++|+.|+|++|.|+.+++ .+..+++|+.|+|++|.|+.+ + .+..+++|+
T Consensus 262 ~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~ 341 (844)
T 3j0a_A 262 GLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVA 341 (844)
T ss_dssp TTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCSCSCSSCTTCC
T ss_pred ccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccCHHHhcCCCCCC
Confidence 1 25677777777777764 256777777777887777776643 444567777788877777775 2 677777778
Q ss_pred EEEccCCCCCCCchhhhhcCCCCCCEEEecCCCCCCCcchhhhHhhhcCCCceeccCCccCC
Q 002315 262 GLDISYNIISTFSELEFLASLPYLLNLWLEGNPLCCSRWYRAQVFSYFAHPAKLKVDGKEIS 323 (937)
Q Consensus 262 ~LdLS~N~Ls~l~~l~~L~~L~sL~~L~Ls~NpLt~~~~~r~~~~~~l~~L~~L~LdgN~Is 323 (937)
.|+|++|.|..++. ..+..+++|+.|+|++|.++..+ .++.|+.+.|.+|.++
T Consensus 342 ~L~L~~N~i~~~~~-~~~~~l~~L~~L~Ls~N~l~~i~--------~~~~L~~L~l~~N~l~ 394 (844)
T 3j0a_A 342 YIDLQKNHIAIIQD-QTFKFLEKLQTLDLRDNALTTIH--------FIPSIPDIFLSGNKLV 394 (844)
T ss_dssp EEECCSCCCCCCCS-SCSCSCCCCCEEEEETCCSCCCS--------SCCSCSEEEEESCCCC
T ss_pred EEECCCCCCCccCh-hhhcCCCCCCEEECCCCCCCccc--------CCCCcchhccCCCCcc
Confidence 88887777777654 45667777777777777776433 1556667777777665
No 59
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.84 E-value=1.1e-20 Score=206.36 Aligned_cols=218 Identities=17% Similarity=0.184 Sum_probs=171.7
Q ss_pred cCCCCCcEEEccCCCCCCCCCCCCCCCCCCcEEEeeCCCCCccchhhHhhhhhhhhhhhccCCCcccchhcccchhcccC
Q 002315 84 KLLTSLKVVSALPPPARDPTPLSLLPFCRLKVLELRGCDLSTSAAKGLLELRHTLEKIICHNSTNALRHVFASRIVEIKD 163 (937)
Q Consensus 84 ~~L~~Lk~LdLs~N~Is~~iP~sLs~L~~L~~LdLS~N~Ls~~lp~~L~~L~~Ll~LlL~~N~L~~L~~l~~~~i~~l~~ 163 (937)
..+++|+.|++++|.+... | .+..+++|++|+|++|.+++..+ +..+++|..+.+.+|.+..++.
T Consensus 38 ~~l~~L~~L~l~~~~i~~l-~-~~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n~l~~~~~----------- 102 (308)
T 1h6u_A 38 ADLDGITTLSAFGTGVTTI-E-GVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLKNVSA----------- 102 (308)
T ss_dssp HHHHTCCEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCSCCGG-----------
T ss_pred HHcCCcCEEEeeCCCccCc-h-hhhccCCCCEEEccCCcCCCChh--HccCCCCCEEEccCCcCCCchh-----------
Confidence 3467888888888888764 3 57888888888888888877444 7778888888888887665532
Q ss_pred CCCCCCccEEEccCCcCccchhhcCCCCCCcEEECCCCCCCCCcCcCCCCCCCEEECCCCCCCCcccccccccccceecc
Q 002315 164 SPQWNRLSFVSCSCNRLVIMDESLQLLPAVETLDLSRNKFAKVDNLRKCVNLKHLDLGFNNLRSIAAFSEVSCHIVKLVL 243 (937)
Q Consensus 164 l~~l~~L~~L~Ls~N~Ls~LP~sL~~L~~L~~LdLs~N~L~~l~~L~~L~~L~~LdLS~N~Lt~L~~l~~~l~sL~~L~L 243 (937)
+..+++|+.|++++|.|+.++. +..+++|++|+|++|.++.++.+..+++|+.|+|++|.++.++. ...+++|+.|+|
T Consensus 103 ~~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l 180 (308)
T 1h6u_A 103 IAGLQSIKTLDLTSTQITDVTP-LAGLSNLQVLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTP-LANLSKLTTLKA 180 (308)
T ss_dssp GTTCTTCCEEECTTSCCCCCGG-GTTCTTCCEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEEC
T ss_pred hcCCCCCCEEECCCCCCCCchh-hcCCCCCCEEECCCCccCcCccccCCCCccEEEccCCcCCCChh-hcCCCCCCEEEC
Confidence 2356789999999999998865 88999999999999999998888899999999999999998877 556689999999
Q ss_pred cCccccccccCCCCCCCCEEEccCCCCCCCchhhhhcCCCCCCEEEecCCCCCCCcchhhhHhhhcCCCceeccCCccCC
Q 002315 244 RNNALTTLRGIENLKSLEGLDISYNIISTFSELEFLASLPYLLNLWLEGNPLCCSRWYRAQVFSYFAHPAKLKVDGKEIS 323 (937)
Q Consensus 244 s~N~Lt~Lp~L~~L~sL~~LdLS~N~Ls~l~~l~~L~~L~sL~~L~Ls~NpLt~~~~~r~~~~~~l~~L~~L~LdgN~Is 323 (937)
++|.|+.++.+..+++|++|+|++|.|+.+++ +..+++|+.|+|++|++++.+......+... .....++|+.+.
T Consensus 181 ~~n~l~~~~~l~~l~~L~~L~L~~N~l~~~~~---l~~l~~L~~L~l~~N~i~~~~~~~~~~~~~~--~~~~~~~g~~~~ 255 (308)
T 1h6u_A 181 DDNKISDISPLASLPNLIEVHLKNNQISDVSP---LANTSNLFIVTLTNQTITNQPVFYNNNLVVP--NVVKGPSGAPIA 255 (308)
T ss_dssp CSSCCCCCGGGGGCTTCCEEECTTSCCCBCGG---GTTCTTCCEEEEEEEEEECCCEECCSEEEEE--CCCBCTTSCBCC
T ss_pred CCCccCcChhhcCCCCCCEEEccCCccCcccc---ccCCCCCCEEEccCCeeecCCeeecccEecc--ceeECCCCCCCC
Confidence 99999998888899999999999999998763 7889999999999999987653322211111 124456666654
No 60
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.83 E-value=8.1e-20 Score=194.94 Aligned_cols=133 Identities=25% Similarity=0.335 Sum_probs=99.4
Q ss_pred CCCCccEEEccCCcCccchh-hcCCCCCCcEEECCCCCCCCCc--CcCCCCCCCEEECCCCCCCCcccc-ccccccccee
Q 002315 166 QWNRLSFVSCSCNRLVIMDE-SLQLLPAVETLDLSRNKFAKVD--NLRKCVNLKHLDLGFNNLRSIAAF-SEVSCHIVKL 241 (937)
Q Consensus 166 ~l~~L~~L~Ls~N~Ls~LP~-sL~~L~~L~~LdLs~N~L~~l~--~L~~L~~L~~LdLS~N~Lt~L~~l-~~~l~sL~~L 241 (937)
.+++|++|++++|.|..+|. .|..+++|++|+|++|.++.++ .|..+++|++|+|++|.|+.++.. +..+++|+.|
T Consensus 83 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L 162 (270)
T 2o6q_A 83 ELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKEL 162 (270)
T ss_dssp SCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred CCCCCCEEECCCCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCccccee
Confidence 34577788888888876665 4577788888888888887764 467778888888888888777653 4456778888
Q ss_pred cccCccccccc--cCCCCCCCCEEEccCCCCCCCchhhhhcCCCCCCEEEecCCCCCCCc
Q 002315 242 VLRNNALTTLR--GIENLKSLEGLDISYNIISTFSELEFLASLPYLLNLWLEGNPLCCSR 299 (937)
Q Consensus 242 ~Ls~N~Lt~Lp--~L~~L~sL~~LdLS~N~Ls~l~~l~~L~~L~sL~~L~Ls~NpLt~~~ 299 (937)
+|++|.|+.++ .+..+++|++|+|++|.|+.++. ..+..+++|+.|+|++||+.|.+
T Consensus 163 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~-~~~~~l~~L~~L~l~~N~~~c~c 221 (270)
T 2o6q_A 163 RLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPE-GAFDSLEKLKMLQLQENPWDCTC 221 (270)
T ss_dssp ECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCCT-TTTTTCTTCCEEECCSSCBCCSS
T ss_pred EecCCcCcEeChhHhccCCCcCEEECCCCcCCcCCH-HHhccccCCCEEEecCCCeeCCC
Confidence 88888887765 46777888888888888887764 45677778888888888887776
No 61
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.83 E-value=3.8e-20 Score=217.28 Aligned_cols=128 Identities=18% Similarity=0.189 Sum_probs=80.9
Q ss_pred CCCCCCcEEECCCCCCCCC--cCcCCCCCCCEEECCCCCCCCccc---ccccccccceecccCccccc-cc--cCCCCCC
Q 002315 188 QLLPAVETLDLSRNKFAKV--DNLRKCVNLKHLDLGFNNLRSIAA---FSEVSCHIVKLVLRNNALTT-LR--GIENLKS 259 (937)
Q Consensus 188 ~~L~~L~~LdLs~N~L~~l--~~L~~L~~L~~LdLS~N~Lt~L~~---l~~~l~sL~~L~Ls~N~Lt~-Lp--~L~~L~s 259 (937)
..+++|++|++++|.++.. ..+..+++|+.|+|++|.|+.++. .+..+++|+.|+|++|.++. +| .+..+++
T Consensus 350 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~ 429 (562)
T 3a79_B 350 PSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAES 429 (562)
T ss_dssp SSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTT
T ss_pred cCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCccc
Confidence 4566677777777777662 356667777777777777766542 23445677777777777766 54 3566677
Q ss_pred CCEEEccCCCCCCCchhhhhcCC-CCCCEEEecCCCCCCCcchhhhHhhhcCCCceeccCCccCC
Q 002315 260 LEGLDISYNIISTFSELEFLASL-PYLLNLWLEGNPLCCSRWYRAQVFSYFAHPAKLKVDGKEIS 323 (937)
Q Consensus 260 L~~LdLS~N~Ls~l~~l~~L~~L-~sL~~L~Ls~NpLt~~~~~r~~~~~~l~~L~~L~LdgN~Is 323 (937)
|+.|+|++|.|++.. +..+ ++|+.|+|++|.++..+ ...+ .++.|+.|+|++|.++
T Consensus 430 L~~L~l~~n~l~~~~----~~~l~~~L~~L~L~~N~l~~ip---~~~~-~l~~L~~L~L~~N~l~ 486 (562)
T 3a79_B 430 ILVLNLSSNMLTGSV----FRCLPPKVKVLDLHNNRIMSIP---KDVT-HLQALQELNVASNQLK 486 (562)
T ss_dssp CCEEECCSSCCCGGG----GSSCCTTCSEEECCSSCCCCCC---TTTT-SSCCCSEEECCSSCCC
T ss_pred CCEEECCCCCCCcch----hhhhcCcCCEEECCCCcCcccC---hhhc-CCCCCCEEECCCCCCC
Confidence 777777777765422 2233 46777777777776443 1222 5677777777777775
No 62
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.82 E-value=5.3e-22 Score=216.45 Aligned_cols=154 Identities=19% Similarity=0.082 Sum_probs=128.0
Q ss_pred CCCCccEEEccCCcCccchhhcCCC-----CCCcEEECCCCCCCCCc--CcCCCCCCCEEECCCCCCCCc---cccc--c
Q 002315 166 QWNRLSFVSCSCNRLVIMDESLQLL-----PAVETLDLSRNKFAKVD--NLRKCVNLKHLDLGFNNLRSI---AAFS--E 233 (937)
Q Consensus 166 ~l~~L~~L~Ls~N~Ls~LP~sL~~L-----~~L~~LdLs~N~L~~l~--~L~~L~~L~~LdLS~N~Lt~L---~~l~--~ 233 (937)
.+++|++|++++|.|+.+|..+..+ ++|++|+|++|+|..++ .|..+++|++|+|++|.+.+. +... .
T Consensus 119 ~l~~L~~L~Ls~N~l~~~~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~ 198 (312)
T 1wwl_A 119 TGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPL 198 (312)
T ss_dssp CSCCCSEEEEESCBCSSSSSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCTT
T ss_pred cCCCccEEEccCCCCcchhHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHHHhc
Confidence 5678999999999999878777766 89999999999999875 789999999999999998753 2222 5
Q ss_pred cccccceecccCccccccc-----cCCCCCCCCEEEccCCCCCCCchhhhhcCCCCCCEEEecCCCCCCCcchhhhHhhh
Q 002315 234 VSCHIVKLVLRNNALTTLR-----GIENLKSLEGLDISYNIISTFSELEFLASLPYLLNLWLEGNPLCCSRWYRAQVFSY 308 (937)
Q Consensus 234 ~l~sL~~L~Ls~N~Lt~Lp-----~L~~L~sL~~LdLS~N~Ls~l~~l~~L~~L~sL~~L~Ls~NpLt~~~~~r~~~~~~ 308 (937)
.+++|+.|+|++|+|+.++ .+..+++|+.|+|++|.|++.++...+..+++|+.|+|++|.++..+. . +
T Consensus 199 ~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~~ip~---~-~-- 272 (312)
T 1wwl_A 199 KFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQVPK---G-L-- 272 (312)
T ss_dssp SCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCSSCCS---S-C--
T ss_pred cCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccChhhh---h-c--
Confidence 6789999999999999653 345789999999999999987644556778999999999999985542 1 1
Q ss_pred cCCCceeccCCccCChh
Q 002315 309 FAHPAKLKVDGKEISTR 325 (937)
Q Consensus 309 l~~L~~L~LdgN~Is~~ 325 (937)
.+.|+.|+|++|.++..
T Consensus 273 ~~~L~~L~Ls~N~l~~~ 289 (312)
T 1wwl_A 273 PAKLSVLDLSYNRLDRN 289 (312)
T ss_dssp CSEEEEEECCSSCCCSC
T ss_pred cCCceEEECCCCCCCCC
Confidence 17899999999999864
No 63
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.82 E-value=2.7e-19 Score=214.33 Aligned_cols=258 Identities=20% Similarity=0.196 Sum_probs=169.7
Q ss_pred cCCcEEEecCCCccchHhhhhhcccchhccCCCCCcccccccccCCCCCcchHHHHHhcCCCCCcEEEccCCCCCCCCCC
Q 002315 26 EGSIVLKLNPAGLHYVQSRLEALRELERLLAGAPLDYLRAYVSDLGDHRALEQLRRILKLLTSLKVVSALPPPARDPTPL 105 (937)
Q Consensus 26 ~~l~~L~L~~~~L~~Lp~~L~~L~~Le~L~~g~~L~~L~l~vLdLs~n~~le~Lp~~L~~L~~Lk~LdLs~N~Is~~iP~ 105 (937)
.+.+.|++..+.+..+|..+. ++|+.| ++++|. +..+|. .+++|++|+|++|.|+.. |.
T Consensus 40 ~~l~~L~ls~n~L~~lp~~l~--~~L~~L--------------~L~~N~-l~~lp~---~l~~L~~L~Ls~N~l~~l-p~ 98 (622)
T 3g06_A 40 NGNAVLNVGESGLTTLPDCLP--AHITTL--------------VIPDNN-LTSLPA---LPPELRTLEVSGNQLTSL-PV 98 (622)
T ss_dssp HCCCEEECCSSCCSCCCSCCC--TTCSEE--------------EECSCC-CSCCCC---CCTTCCEEEECSCCCSCC-CC
T ss_pred CCCcEEEecCCCcCccChhhC--CCCcEE--------------EecCCC-CCCCCC---cCCCCCEEEcCCCcCCcC-CC
Confidence 457899999999998886543 223322 233332 222332 345555555555555432 22
Q ss_pred CCCCCCCCcEEEeeCCCCCccchhhHhhhhhhhhhhhccCCCcccchhcc---------cchhcccCCCCCCCccEEEcc
Q 002315 106 SLLPFCRLKVLELRGCDLSTSAAKGLLELRHTLEKIICHNSTNALRHVFA---------SRIVEIKDSPQWNRLSFVSCS 176 (937)
Q Consensus 106 sLs~L~~L~~LdLS~N~Ls~~lp~~L~~L~~Ll~LlL~~N~L~~L~~l~~---------~~i~~l~~l~~l~~L~~L~Ls 176 (937)
.+++|++|+|++|.|++ +|. .+++|..+.+.+|.+..++..+. +.+..++ ..+.+|+.|+++
T Consensus 99 ---~l~~L~~L~Ls~N~l~~-l~~---~l~~L~~L~L~~N~l~~lp~~l~~L~~L~Ls~N~l~~l~--~~~~~L~~L~L~ 169 (622)
T 3g06_A 99 ---LPPGLLELSIFSNPLTH-LPA---LPSGLCKLWIFGNQLTSLPVLPPGLQELSVSDNQLASLP--ALPSELCKLWAY 169 (622)
T ss_dssp ---CCTTCCEEEECSCCCCC-CCC---CCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSCCC--CCCTTCCEEECC
T ss_pred ---CCCCCCEEECcCCcCCC-CCC---CCCCcCEEECCCCCCCcCCCCCCCCCEEECcCCcCCCcC--CccCCCCEEECC
Confidence 34555555555555554 222 23344444455554444332110 0001111 123467777777
Q ss_pred CCcCccchhhcCCCCCCcEEECCCCCCCCCcCcCCCCCCCEEECCCCCCCCcccccccccccceecccCccccccccCCC
Q 002315 177 CNRLVIMDESLQLLPAVETLDLSRNKFAKVDNLRKCVNLKHLDLGFNNLRSIAAFSEVSCHIVKLVLRNNALTTLRGIEN 256 (937)
Q Consensus 177 ~N~Ls~LP~sL~~L~~L~~LdLs~N~L~~l~~L~~L~~L~~LdLS~N~Lt~L~~l~~~l~sL~~L~Ls~N~Lt~Lp~L~~ 256 (937)
+|.|+.+| ..+++|+.|+|++|.|+.++.. +++|+.|++++|.|+.++.. +++|+.|+|++|.|+.+| ..
T Consensus 170 ~N~l~~l~---~~~~~L~~L~Ls~N~l~~l~~~--~~~L~~L~L~~N~l~~l~~~---~~~L~~L~Ls~N~L~~lp--~~ 239 (622)
T 3g06_A 170 NNQLTSLP---MLPSGLQELSVSDNQLASLPTL--PSELYKLWAYNNRLTSLPAL---PSGLKELIVSGNRLTSLP--VL 239 (622)
T ss_dssp SSCCSCCC---CCCTTCCEEECCSSCCSCCCCC--CTTCCEEECCSSCCSSCCCC---CTTCCEEECCSSCCSCCC--CC
T ss_pred CCCCCCCc---ccCCCCcEEECCCCCCCCCCCc--cchhhEEECcCCcccccCCC---CCCCCEEEccCCccCcCC--CC
Confidence 77777766 4467888888888888877643 47888888888888887753 378999999999999988 56
Q ss_pred CCCCCEEEccCCCCCCCchhhhhcCCCCCCEEEecCCCCCCCcchhhhHhhhcCCCceeccCCccCChhhHHHHHH
Q 002315 257 LKSLEGLDISYNIISTFSELEFLASLPYLLNLWLEGNPLCCSRWYRAQVFSYFAHPAKLKVDGKEISTRELWERQL 332 (937)
Q Consensus 257 L~sL~~LdLS~N~Ls~l~~l~~L~~L~sL~~L~Ls~NpLt~~~~~r~~~~~~l~~L~~L~LdgN~Is~~e~~~~~~ 332 (937)
+++|+.|+|++|.|+.+|. .+++|+.|+|++|.|+..+ ..+..++.|+.|+|.+|+++.........
T Consensus 240 l~~L~~L~Ls~N~L~~lp~-----~~~~L~~L~Ls~N~L~~lp----~~l~~l~~L~~L~L~~N~l~~~~~~~l~~ 306 (622)
T 3g06_A 240 PSELKELMVSGNRLTSLPM-----LPSGLLSLSVYRNQLTRLP----ESLIHLSSETTVNLEGNPLSERTLQALRE 306 (622)
T ss_dssp CTTCCEEECCSSCCSCCCC-----CCTTCCEEECCSSCCCSCC----GGGGGSCTTCEEECCSCCCCHHHHHHHHH
T ss_pred CCcCcEEECCCCCCCcCCc-----ccccCcEEeCCCCCCCcCC----HHHhhccccCEEEecCCCCCCcCHHHHHh
Confidence 7899999999999999874 6789999999999998554 44778999999999999999766554333
No 64
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.82 E-value=1.7e-19 Score=222.36 Aligned_cols=288 Identities=16% Similarity=0.180 Sum_probs=204.0
Q ss_pred hhcCCcEEEecCC-Cccch-HhhhhhcccchhccCCC-CCcc---------cccccccCCCCCcchHHHHH--hcCCCCC
Q 002315 24 LIEGSIVLKLNPA-GLHYV-QSRLEALRELERLLAGA-PLDY---------LRAYVSDLGDHRALEQLRRI--LKLLTSL 89 (937)
Q Consensus 24 lL~~l~~L~L~~~-~L~~L-p~~L~~L~~Le~L~~g~-~L~~---------L~l~vLdLs~n~~le~Lp~~--L~~L~~L 89 (937)
-+..++.|++..+ .+..+ |..+..|++|+.|.... .+.. -.+..+++++|...+.+|.. +.++++|
T Consensus 46 ~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L 125 (844)
T 3j0a_A 46 FLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKAL 125 (844)
T ss_dssp SCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSC
T ss_pred ccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCC
Confidence 3566778888777 33445 55666666666655421 1111 12346778888766655554 8899999
Q ss_pred cEEEccCCCCCCCCC-CCCCCCCCCcEEEeeCCCCCccchhhHhhh--hhhhhhhhccCCCcccc---------------
Q 002315 90 KVVSALPPPARDPTP-LSLLPFCRLKVLELRGCDLSTSAAKGLLEL--RHTLEKIICHNSTNALR--------------- 151 (937)
Q Consensus 90 k~LdLs~N~Is~~iP-~sLs~L~~L~~LdLS~N~Ls~~lp~~L~~L--~~Ll~LlL~~N~L~~L~--------------- 151 (937)
+.|+|++|.+.+..+ ..|+++++|++|+|++|.+++..+..+..+ ++|..+.+..|.+....
T Consensus 126 ~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~ 205 (844)
T 3j0a_A 126 TRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMV 205 (844)
T ss_dssp CEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCC
T ss_pred CEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCCccceEECCCCccccccccchhhcCCccccCc
Confidence 999999999988755 579999999999999999998888888777 56666666666443211
Q ss_pred --hh--------------cccch------------------------hc--ccCCCC--CCCccEEEccCCcCccc-hhh
Q 002315 152 --HV--------------FASRI------------------------VE--IKDSPQ--WNRLSFVSCSCNRLVIM-DES 186 (937)
Q Consensus 152 --~l--------------~~~~i------------------------~~--l~~l~~--l~~L~~L~Ls~N~Ls~L-P~s 186 (937)
.+ +...+ .. ...+.. .++|+.|++++|.+..+ |..
T Consensus 206 L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~ 285 (844)
T 3j0a_A 206 LEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRV 285 (844)
T ss_dssp BSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCC
T ss_pred eeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccccCCCChhhhhccccCCccEEECCCCcccccChhh
Confidence 00 00000 00 000111 26799999999999855 457
Q ss_pred cCCCCCCcEEECCCCCCCCCc--CcCCCCCCCEEECCCCCCCCcc-cccccccccceecccCccccccc--cCCCCCCCC
Q 002315 187 LQLLPAVETLDLSRNKFAKVD--NLRKCVNLKHLDLGFNNLRSIA-AFSEVSCHIVKLVLRNNALTTLR--GIENLKSLE 261 (937)
Q Consensus 187 L~~L~~L~~LdLs~N~L~~l~--~L~~L~~L~~LdLS~N~Lt~L~-~l~~~l~sL~~L~Ls~N~Lt~Lp--~L~~L~sL~ 261 (937)
|..+++|+.|+|++|.|..+. .|..+++|++|+|++|.++.+. ..+..+++|+.|+|++|.|+.++ .+..+++|+
T Consensus 286 ~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~ 365 (844)
T 3j0a_A 286 FETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQ 365 (844)
T ss_dssp SSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCSCSCSSCTTCCEEECCSCCCCCCCSSCSCSCCCCC
T ss_pred hhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccCHHHhcCCCCCCEEECCCCCCCccChhhhcCCCCCC
Confidence 889999999999999998863 6889999999999999998874 45567789999999999998875 588899999
Q ss_pred EEEccCCCCCCCchhhhhcCCCCCCEEEecCCCCCCCcchhhhHhhhcCCCceeccCCccCCh
Q 002315 262 GLDISYNIISTFSELEFLASLPYLLNLWLEGNPLCCSRWYRAQVFSYFAHPAKLKVDGKEIST 324 (937)
Q Consensus 262 ~LdLS~N~Ls~l~~l~~L~~L~sL~~L~Ls~NpLt~~~~~r~~~~~~l~~L~~L~LdgN~Is~ 324 (937)
.|+|++|.|+.++. +++|+.|++++|++...+.. ...++.++|.+|.++.
T Consensus 366 ~L~Ls~N~l~~i~~------~~~L~~L~l~~N~l~~l~~~-------~~~l~~L~ls~N~l~~ 415 (844)
T 3j0a_A 366 TLDLRDNALTTIHF------IPSIPDIFLSGNKLVTLPKI-------NLTANLIHLSENRLEN 415 (844)
T ss_dssp EEEEETCCSCCCSS------CCSCSEEEEESCCCCCCCCC-------CTTCCEEECCSCCCCS
T ss_pred EEECCCCCCCcccC------CCCcchhccCCCCccccccc-------ccccceeecccCcccc
Confidence 99999999987652 66777888887777644321 2334455555555543
No 65
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.82 E-value=3.3e-19 Score=205.70 Aligned_cols=252 Identities=17% Similarity=0.162 Sum_probs=177.5
Q ss_pred hcCCcEEEecCCCccchHhhhhhcccchhccCCCCCcccccccccCCCCCcchHHHHHhcCCCCCcEEEccCCCCCCCCC
Q 002315 25 IEGSIVLKLNPAGLHYVQSRLEALRELERLLAGAPLDYLRAYVSDLGDHRALEQLRRILKLLTSLKVVSALPPPARDPTP 104 (937)
Q Consensus 25 L~~l~~L~L~~~~L~~Lp~~L~~L~~Le~L~~g~~L~~L~l~vLdLs~n~~le~Lp~~L~~L~~Lk~LdLs~N~Is~~iP 104 (937)
+..++.|++..+.+..+| .+..++.|+.| ++++|... .+| +..+++|++|+|++|.+++. |
T Consensus 41 l~~L~~L~Ls~n~l~~~~-~l~~l~~L~~L--------------~Ls~n~l~-~~~--~~~l~~L~~L~Ls~N~l~~~-~ 101 (457)
T 3bz5_A 41 LATLTSLDCHNSSITDMT-GIEKLTGLTKL--------------ICTSNNIT-TLD--LSQNTNLTYLACDSNKLTNL-D 101 (457)
T ss_dssp HTTCCEEECCSSCCCCCT-TGGGCTTCSEE--------------ECCSSCCS-CCC--CTTCTTCSEEECCSSCCSCC-C
T ss_pred cCCCCEEEccCCCcccCh-hhcccCCCCEE--------------EccCCcCC-eEc--cccCCCCCEEECcCCCCcee-e
Confidence 566788888888888776 45555544433 34444322 233 67788888888888888775 3
Q ss_pred CCCCCCCCCcEEEeeCCCCCccchhhHhhhhhhhhhhhccCCCcccchhcccchhcccCCCCCCCccEEEccCC-cCccc
Q 002315 105 LSLLPFCRLKVLELRGCDLSTSAAKGLLELRHTLEKIICHNSTNALRHVFASRIVEIKDSPQWNRLSFVSCSCN-RLVIM 183 (937)
Q Consensus 105 ~sLs~L~~L~~LdLS~N~Ls~~lp~~L~~L~~Ll~LlL~~N~L~~L~~l~~~~i~~l~~l~~l~~L~~L~Ls~N-~Ls~L 183 (937)
|+.+++|++|+|++|.+++ +| +..+++|..+.+.+|.+..++ +..+++|++|++++| .+..+
T Consensus 102 --~~~l~~L~~L~L~~N~l~~-l~--~~~l~~L~~L~l~~N~l~~l~------------l~~l~~L~~L~l~~n~~~~~~ 164 (457)
T 3bz5_A 102 --VTPLTKLTYLNCDTNKLTK-LD--VSQNPLLTYLNCARNTLTEID------------VSHNTQLTELDCHLNKKITKL 164 (457)
T ss_dssp --CTTCTTCCEEECCSSCCSC-CC--CTTCTTCCEEECTTSCCSCCC------------CTTCTTCCEEECTTCSCCCCC
T ss_pred --cCCCCcCCEEECCCCcCCe-ec--CCCCCcCCEEECCCCccceec------------cccCCcCCEEECCCCCccccc
Confidence 7888888888888888887 33 777888888888888766542 235677888888888 45555
Q ss_pred hhhcCCCCCCcEEECCCCCCCCCcCcCCCCCCCEEECCCCCCCCcccccccccccceecccCccccccccCCCCCCCCEE
Q 002315 184 DESLQLLPAVETLDLSRNKFAKVDNLRKCVNLKHLDLGFNNLRSIAAFSEVSCHIVKLVLRNNALTTLRGIENLKSLEGL 263 (937)
Q Consensus 184 P~sL~~L~~L~~LdLs~N~L~~l~~L~~L~~L~~LdLS~N~Lt~L~~l~~~l~sL~~L~Ls~N~Lt~Lp~L~~L~sL~~L 263 (937)
.+..+++|+.|++++|.++.++ +..+++|+.|++++|.++.++ ...+++|+.|+|++|+|+.+| +..+++|+.|
T Consensus 165 --~~~~l~~L~~L~ls~n~l~~l~-l~~l~~L~~L~l~~N~l~~~~--l~~l~~L~~L~Ls~N~l~~ip-~~~l~~L~~L 238 (457)
T 3bz5_A 165 --DVTPQTQLTTLDCSFNKITELD-VSQNKLLNRLNCDTNNITKLD--LNQNIQLTFLDCSSNKLTEID-VTPLTQLTYF 238 (457)
T ss_dssp --CCTTCTTCCEEECCSSCCCCCC-CTTCTTCCEEECCSSCCSCCC--CTTCTTCSEEECCSSCCSCCC-CTTCTTCSEE
T ss_pred --ccccCCcCCEEECCCCccceec-cccCCCCCEEECcCCcCCeec--cccCCCCCEEECcCCcccccC-ccccCCCCEE
Confidence 4677888888888888888876 778888888888888888773 445678888888888888887 7788888888
Q ss_pred EccCCCCCCCchhhhhcCCCCCCEEEecCCCCCCCcch-----hhhHhhhcCCCceeccCCccC
Q 002315 264 DISYNIISTFSELEFLASLPYLLNLWLEGNPLCCSRWY-----RAQVFSYFAHPAKLKVDGKEI 322 (937)
Q Consensus 264 dLS~N~Ls~l~~l~~L~~L~sL~~L~Ls~NpLt~~~~~-----r~~~~~~l~~L~~L~LdgN~I 322 (937)
+|++|.|++++ +..+++|+.|++++|.+...... ....+..++.|+.|+|++|+.
T Consensus 239 ~l~~N~l~~~~----~~~l~~L~~L~l~~n~L~~L~l~~n~~~~~~~~~~l~~L~~L~Ls~n~~ 298 (457)
T 3bz5_A 239 DCSVNPLTELD----VSTLSKLTTLHCIQTDLLEIDLTHNTQLIYFQAEGCRKIKELDVTHNTQ 298 (457)
T ss_dssp ECCSSCCSCCC----CTTCTTCCEEECTTCCCSCCCCTTCTTCCEEECTTCTTCCCCCCTTCTT
T ss_pred EeeCCcCCCcC----HHHCCCCCEEeccCCCCCEEECCCCccCCcccccccccCCEEECCCCcc
Confidence 88888888865 34556666665555555432100 001123457788888888764
No 66
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.81 E-value=1.9e-19 Score=210.98 Aligned_cols=85 Identities=20% Similarity=0.176 Sum_probs=63.0
Q ss_pred cccceecccCccccc--cc-cCCCCCCCCEEEccCCCCCCCchhhhhcCCCCCCEEEecCCCCCCCcchhhhHhhhcCCC
Q 002315 236 CHIVKLVLRNNALTT--LR-GIENLKSLEGLDISYNIISTFSELEFLASLPYLLNLWLEGNPLCCSRWYRAQVFSYFAHP 312 (937)
Q Consensus 236 ~sL~~L~Ls~N~Lt~--Lp-~L~~L~sL~~LdLS~N~Ls~l~~l~~L~~L~sL~~L~Ls~NpLt~~~~~r~~~~~~l~~L 312 (937)
+.|+.|+|++|.+.. +| .+..+++|+.|+|++|+|+.+++ ..+..+++|+.|+|++|.|+..+ ...+..++.|
T Consensus 469 ~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~-~~f~~l~~L~~L~Ls~N~l~~l~---~~~~~~l~~L 544 (635)
T 4g8a_A 469 SSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSP-TAFNSLSSLQVLNMSHNNFFSLD---TFPYKCLNSL 544 (635)
T ss_dssp TTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECT-TTTTTCTTCCEEECTTSCCCBCC---CGGGTTCTTC
T ss_pred hhhhhhhhhhcccccccCchhhhhccccCEEECCCCccCCcCh-HHHcCCCCCCEEECCCCcCCCCC---hhHHhCCCCC
Confidence 456666666665433 23 57778888888888888888764 66788888888888888887554 3456778888
Q ss_pred ceeccCCccCCh
Q 002315 313 AKLKVDGKEIST 324 (937)
Q Consensus 313 ~~L~LdgN~Is~ 324 (937)
+.|+|++|.++.
T Consensus 545 ~~L~Ls~N~l~~ 556 (635)
T 4g8a_A 545 QVLDYSLNHIMT 556 (635)
T ss_dssp CEEECTTSCCCB
T ss_pred CEEECCCCcCCC
Confidence 888888888863
No 67
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.81 E-value=1.1e-19 Score=209.56 Aligned_cols=258 Identities=17% Similarity=0.124 Sum_probs=154.9
Q ss_pred cCCcEEEecCCCccchHhhhhhcccchhccCCC-------C--Ccc---c-----------ccccccCCCCCcchHHHHH
Q 002315 26 EGSIVLKLNPAGLHYVQSRLEALRELERLLAGA-------P--LDY---L-----------RAYVSDLGDHRALEQLRRI 82 (937)
Q Consensus 26 ~~l~~L~L~~~~L~~Lp~~L~~L~~Le~L~~g~-------~--L~~---L-----------~l~vLdLs~n~~le~Lp~~ 82 (937)
..++.|.+..+.+..+|..+..|.+|+.+.... + +.. + .+..++++++. +..+|..
T Consensus 11 ~~L~~L~l~~n~l~~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~-l~~lp~~ 89 (454)
T 1jl5_A 11 TFLQEPLRHSSNLTEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLG-LSSLPEL 89 (454)
T ss_dssp -----------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTSC-CSCCCSC
T ss_pred ccchhhhcccCchhhCChhHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhccCCCEEEecCCc-cccCCCC
Confidence 456778888888989998888888877754310 0 000 0 12334555544 2223331
Q ss_pred hcCCCCCcEEEccCCCCCCCCCCCCCCCCCCcEEEeeCCCCCccchhhHhhhhhhhhhhhccCCCcccchhcccchhccc
Q 002315 83 LKLLTSLKVVSALPPPARDPTPLSLLPFCRLKVLELRGCDLSTSAAKGLLELRHTLEKIICHNSTNALRHVFASRIVEIK 162 (937)
Q Consensus 83 L~~L~~Lk~LdLs~N~Is~~iP~sLs~L~~L~~LdLS~N~Ls~~lp~~L~~L~~Ll~LlL~~N~L~~L~~l~~~~i~~l~ 162 (937)
.++|+.|+|++|.+++ +|.. +++|++|++++|.+++ +|.. .+++.++.+.+|.+..++
T Consensus 90 ---~~~L~~L~l~~n~l~~-lp~~---~~~L~~L~l~~n~l~~-l~~~---~~~L~~L~L~~n~l~~lp----------- 147 (454)
T 1jl5_A 90 ---PPHLESLVASCNSLTE-LPEL---PQSLKSLLVDNNNLKA-LSDL---PPLLEYLGVSNNQLEKLP----------- 147 (454)
T ss_dssp ---CTTCSEEECCSSCCSS-CCCC---CTTCCEEECCSSCCSC-CCSC---CTTCCEEECCSSCCSSCC-----------
T ss_pred ---cCCCCEEEccCCcCCc-cccc---cCCCcEEECCCCccCc-ccCC---CCCCCEEECcCCCCCCCc-----------
Confidence 3566777777676665 3432 3667777777776665 2211 135556666666554433
Q ss_pred CCCCCCCccEEEccCCcCccchhhcCCCCCCcEEECCCCCCCCCcCcCCCCCCCEEECCCCCCCCcccccccccccceec
Q 002315 163 DSPQWNRLSFVSCSCNRLVIMDESLQLLPAVETLDLSRNKFAKVDNLRKCVNLKHLDLGFNNLRSIAAFSEVSCHIVKLV 242 (937)
Q Consensus 163 ~l~~l~~L~~L~Ls~N~Ls~LP~sL~~L~~L~~LdLs~N~L~~l~~L~~L~~L~~LdLS~N~Lt~L~~l~~~l~sL~~L~ 242 (937)
.+..+++|++|++++|.++.+|.. +++|++|++++|.++.++.+..+++|+.|++++|.+++++... ++|+.|+
T Consensus 148 ~~~~l~~L~~L~l~~N~l~~lp~~---~~~L~~L~L~~n~l~~l~~~~~l~~L~~L~l~~N~l~~l~~~~---~~L~~L~ 221 (454)
T 1jl5_A 148 ELQNSSFLKIIDVDNNSLKKLPDL---PPSLEFIAAGNNQLEELPELQNLPFLTAIYADNNSLKKLPDLP---LSLESIV 221 (454)
T ss_dssp CCTTCTTCCEEECCSSCCSCCCCC---CTTCCEEECCSSCCSSCCCCTTCTTCCEEECCSSCCSSCCCCC---TTCCEEE
T ss_pred ccCCCCCCCEEECCCCcCcccCCC---cccccEEECcCCcCCcCccccCCCCCCEEECCCCcCCcCCCCc---CcccEEE
Confidence 234667888888888888877654 3478888888888888877888888888888888888776543 5788888
Q ss_pred ccCccccccccCCCCCCCCEEEccCCCCCCCchhhhhcCCCCCCEEEecCCCCCCCcchhhhHhhhcCCCceeccCCccC
Q 002315 243 LRNNALTTLRGIENLKSLEGLDISYNIISTFSELEFLASLPYLLNLWLEGNPLCCSRWYRAQVFSYFAHPAKLKVDGKEI 322 (937)
Q Consensus 243 Ls~N~Lt~Lp~L~~L~sL~~LdLS~N~Ls~l~~l~~L~~L~sL~~L~Ls~NpLt~~~~~r~~~~~~l~~L~~L~LdgN~I 322 (937)
+++|.++.+|.+..+++|++|++++|+++.++. .+++|+.|++++|.+...+. .++.|+.++|++|.+
T Consensus 222 l~~n~l~~lp~~~~l~~L~~L~l~~N~l~~l~~-----~~~~L~~L~l~~N~l~~l~~-------~~~~L~~L~ls~N~l 289 (454)
T 1jl5_A 222 AGNNILEELPELQNLPFLTTIYADNNLLKTLPD-----LPPSLEALNVRDNYLTDLPE-------LPQSLTFLDVSENIF 289 (454)
T ss_dssp CCSSCCSSCCCCTTCTTCCEEECCSSCCSSCCS-----CCTTCCEEECCSSCCSCCCC-------CCTTCCEEECCSSCC
T ss_pred CcCCcCCcccccCCCCCCCEEECCCCcCCcccc-----cccccCEEECCCCcccccCc-------ccCcCCEEECcCCcc
Confidence 888888888778888888888888888887763 24678888888888875442 236688888888887
Q ss_pred Ch
Q 002315 323 ST 324 (937)
Q Consensus 323 s~ 324 (937)
+.
T Consensus 290 ~~ 291 (454)
T 1jl5_A 290 SG 291 (454)
T ss_dssp SE
T ss_pred Cc
Confidence 64
No 68
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.80 E-value=5.2e-19 Score=188.56 Aligned_cols=219 Identities=15% Similarity=0.138 Sum_probs=179.3
Q ss_pred EEEccCCCCCCCCCCCCCCCCCCcEEEeeCCCCCccchhhHhhhhhhhhhhhccCCCcccchhcccchhcccCCCCCCCc
Q 002315 91 VVSALPPPARDPTPLSLLPFCRLKVLELRGCDLSTSAAKGLLELRHTLEKIICHNSTNALRHVFASRIVEIKDSPQWNRL 170 (937)
Q Consensus 91 ~LdLs~N~Is~~iP~sLs~L~~L~~LdLS~N~Ls~~lp~~L~~L~~Ll~LlL~~N~L~~L~~l~~~~i~~l~~l~~l~~L 170 (937)
.++..+..+.. +|..+. ++|++|+|++|.+++..+..|..+++|..+.+.+|.+..+.... +..+++|
T Consensus 11 ~~~c~~~~l~~-ip~~l~--~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~---------~~~l~~L 78 (276)
T 2z62_A 11 TYQCMELNFYK-IPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGA---------YQSLSHL 78 (276)
T ss_dssp EEECTTSCCSS-CCSSSC--TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTT---------TTTCTTC
T ss_pred eEEecCCCccc-cCCCCC--CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHH---------ccCCcCC
Confidence 34555555543 455553 68999999999999977778999999999999999877665422 2467899
Q ss_pred cEEEccCCcCccch-hhcCCCCCCcEEECCCCCCCCCc--CcCCCCCCCEEECCCCCCCC--cccccccccccceecccC
Q 002315 171 SFVSCSCNRLVIMD-ESLQLLPAVETLDLSRNKFAKVD--NLRKCVNLKHLDLGFNNLRS--IAAFSEVSCHIVKLVLRN 245 (937)
Q Consensus 171 ~~L~Ls~N~Ls~LP-~sL~~L~~L~~LdLs~N~L~~l~--~L~~L~~L~~LdLS~N~Lt~--L~~l~~~l~sL~~L~Ls~ 245 (937)
++|++++|.++.++ ..+..+++|++|++++|.+..++ .+..+++|++|+|++|.++. ++..+..+++|+.|+|++
T Consensus 79 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~ 158 (276)
T 2z62_A 79 STLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSS 158 (276)
T ss_dssp CEEECTTCCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCS
T ss_pred CEEECCCCccCccChhhhcCCccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCC
Confidence 99999999999776 57899999999999999999875 58899999999999999997 466677789999999999
Q ss_pred ccccccc--cCCCCCCCC----EEEccCCCCCCCchhhhhcCCCCCCEEEecCCCCCCCcchhhhHhhhcCCCceeccCC
Q 002315 246 NALTTLR--GIENLKSLE----GLDISYNIISTFSELEFLASLPYLLNLWLEGNPLCCSRWYRAQVFSYFAHPAKLKVDG 319 (937)
Q Consensus 246 N~Lt~Lp--~L~~L~sL~----~LdLS~N~Ls~l~~l~~L~~L~sL~~L~Ls~NpLt~~~~~r~~~~~~l~~L~~L~Ldg 319 (937)
|+|+.++ .+..+++|+ .|+|++|.|..++. ......+|+.|+|++|.++..+ ...+..++.|+.++|++
T Consensus 159 N~l~~~~~~~~~~l~~L~~l~l~L~ls~n~l~~~~~--~~~~~~~L~~L~L~~n~l~~~~---~~~~~~l~~L~~L~l~~ 233 (276)
T 2z62_A 159 NKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQP--GAFKEIRLKELALDTNQLKSVP---DGIFDRLTSLQKIWLHT 233 (276)
T ss_dssp SCCCEECGGGGHHHHTCTTCCEEEECCSSCCCEECT--TSSCSCCEEEEECCSSCCSCCC---TTTTTTCCSCCEEECCS
T ss_pred CCCCcCCHHHhhhhhhccccceeeecCCCcccccCc--cccCCCcccEEECCCCceeecC---HhHhcccccccEEEccC
Confidence 9999864 455555555 89999999998873 3344558999999999998664 34567789999999999
Q ss_pred ccCChhh
Q 002315 320 KEISTRE 326 (937)
Q Consensus 320 N~Is~~e 326 (937)
|++.+..
T Consensus 234 N~~~c~c 240 (276)
T 2z62_A 234 NPWDCSC 240 (276)
T ss_dssp SCBCCCT
T ss_pred CcccccC
Confidence 9999875
No 69
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.80 E-value=8.1e-19 Score=202.39 Aligned_cols=220 Identities=20% Similarity=0.186 Sum_probs=180.6
Q ss_pred ccCCCCCcchHHHHHhcCCCCCcEEEccCCCCCCCCCCCCCCCCCCcEEEeeCCCCCccchhhHhhhhhhhhhhhccCCC
Q 002315 68 SDLGDHRALEQLRRILKLLTSLKVVSALPPPARDPTPLSLLPFCRLKVLELRGCDLSTSAAKGLLELRHTLEKIICHNST 147 (937)
Q Consensus 68 LdLs~n~~le~Lp~~L~~L~~Lk~LdLs~N~Is~~iP~sLs~L~~L~~LdLS~N~Ls~~lp~~L~~L~~Ll~LlL~~N~L 147 (937)
++++++... .+| .+..+++|++|+|++|.+++. | ++.+++|++|+|++|.|++. + +..+++|..+.+.+|.+
T Consensus 47 L~Ls~n~l~-~~~-~l~~l~~L~~L~Ls~n~l~~~-~--~~~l~~L~~L~Ls~N~l~~~-~--~~~l~~L~~L~L~~N~l 118 (457)
T 3bz5_A 47 LDCHNSSIT-DMT-GIEKLTGLTKLICTSNNITTL-D--LSQNTNLTYLACDSNKLTNL-D--VTPLTKLTYLNCDTNKL 118 (457)
T ss_dssp EECCSSCCC-CCT-TGGGCTTCSEEECCSSCCSCC-C--CTTCTTCSEEECCSSCCSCC-C--CTTCTTCCEEECCSSCC
T ss_pred EEccCCCcc-cCh-hhcccCCCCEEEccCCcCCeE-c--cccCCCCCEEECcCCCCcee-e--cCCCCcCCEEECCCCcC
Confidence 455555433 345 578899999999999999875 3 88999999999999999884 3 78888999999999977
Q ss_pred cccchhcccchhcccCCCCCCCccEEEccCCcCccchhhcCCCCCCcEEECCCC-CCCCCcCcCCCCCCCEEECCCCCCC
Q 002315 148 NALRHVFASRIVEIKDSPQWNRLSFVSCSCNRLVIMDESLQLLPAVETLDLSRN-KFAKVDNLRKCVNLKHLDLGFNNLR 226 (937)
Q Consensus 148 ~~L~~l~~~~i~~l~~l~~l~~L~~L~Ls~N~Ls~LP~sL~~L~~L~~LdLs~N-~L~~l~~L~~L~~L~~LdLS~N~Lt 226 (937)
..++ +..+++|++|++++|.|+.++ +..+++|++|++++| .+..+ .+..+++|+.|+|++|.|+
T Consensus 119 ~~l~------------~~~l~~L~~L~l~~N~l~~l~--l~~l~~L~~L~l~~n~~~~~~-~~~~l~~L~~L~ls~n~l~ 183 (457)
T 3bz5_A 119 TKLD------------VSQNPLLTYLNCARNTLTEID--VSHNTQLTELDCHLNKKITKL-DVTPQTQLTTLDCSFNKIT 183 (457)
T ss_dssp SCCC------------CTTCTTCCEEECTTSCCSCCC--CTTCTTCCEEECTTCSCCCCC-CCTTCTTCCEEECCSSCCC
T ss_pred Ceec------------CCCCCcCCEEECCCCccceec--cccCCcCCEEECCCCCccccc-ccccCCcCCEEECCCCccc
Confidence 6542 246778999999999999874 788999999999999 45555 6888999999999999999
Q ss_pred CcccccccccccceecccCccccccccCCCCCCCCEEEccCCCCCCCchhhhhcCCCCCCEEEecCCCCCCCcchhhhHh
Q 002315 227 SIAAFSEVSCHIVKLVLRNNALTTLRGIENLKSLEGLDISYNIISTFSELEFLASLPYLLNLWLEGNPLCCSRWYRAQVF 306 (937)
Q Consensus 227 ~L~~l~~~l~sL~~L~Ls~N~Lt~Lp~L~~L~sL~~LdLS~N~Ls~l~~l~~L~~L~sL~~L~Ls~NpLt~~~~~r~~~~ 306 (937)
.++ ...+++|+.|++++|.|+.++ +..+++|+.|+|++|+|+++| +..+++|+.|++++|+++..+ +
T Consensus 184 ~l~--l~~l~~L~~L~l~~N~l~~~~-l~~l~~L~~L~Ls~N~l~~ip----~~~l~~L~~L~l~~N~l~~~~------~ 250 (457)
T 3bz5_A 184 ELD--VSQNKLLNRLNCDTNNITKLD-LNQNIQLTFLDCSSNKLTEID----VTPLTQLTYFDCSVNPLTELD------V 250 (457)
T ss_dssp CCC--CTTCTTCCEEECCSSCCSCCC-CTTCTTCSEEECCSSCCSCCC----CTTCTTCSEEECCSSCCSCCC------C
T ss_pred eec--cccCCCCCEEECcCCcCCeec-cccCCCCCEEECcCCcccccC----ccccCCCCEEEeeCCcCCCcC------H
Confidence 987 456689999999999999984 888999999999999999975 678899999999999998654 2
Q ss_pred hhcCCCceeccCCccCC
Q 002315 307 SYFAHPAKLKVDGKEIS 323 (937)
Q Consensus 307 ~~l~~L~~L~LdgN~Is 323 (937)
..++.|+.+.+.+|.+.
T Consensus 251 ~~l~~L~~L~l~~n~L~ 267 (457)
T 3bz5_A 251 STLSKLTTLHCIQTDLL 267 (457)
T ss_dssp TTCTTCCEEECTTCCCS
T ss_pred HHCCCCCEEeccCCCCC
Confidence 35667777777777664
No 70
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.80 E-value=7.3e-19 Score=202.62 Aligned_cols=219 Identities=20% Similarity=0.163 Sum_probs=125.7
Q ss_pred cccCCCCCcchHHHHHhcCCCCCcEEEccCCCCCCCCCCCCCCCCCCcEEEeeCCCCCccchhhHhhhhhhhhhhhccCC
Q 002315 67 VSDLGDHRALEQLRRILKLLTSLKVVSALPPPARDPTPLSLLPFCRLKVLELRGCDLSTSAAKGLLELRHTLEKIICHNS 146 (937)
Q Consensus 67 vLdLs~n~~le~Lp~~L~~L~~Lk~LdLs~N~Is~~iP~sLs~L~~L~~LdLS~N~Ls~~lp~~L~~L~~Ll~LlL~~N~ 146 (937)
.+++++|...+ +| .+..+++|++|++++|.+++ +|..+ ++|++|+|++|.+++ +| .+..+++|..+.+.+|.
T Consensus 135 ~L~L~~n~l~~-lp-~~~~l~~L~~L~l~~N~l~~-lp~~~---~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~l~~N~ 206 (454)
T 1jl5_A 135 YLGVSNNQLEK-LP-ELQNSSFLKIIDVDNNSLKK-LPDLP---PSLEFIAAGNNQLEE-LP-ELQNLPFLTAIYADNNS 206 (454)
T ss_dssp EEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSC-CCCCC---TTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSC
T ss_pred EEECcCCCCCC-Cc-ccCCCCCCCEEECCCCcCcc-cCCCc---ccccEEECcCCcCCc-Cc-cccCCCCCCEEECCCCc
Confidence 44555444332 44 35566666666666666554 23322 356666666666655 33 45666666666666665
Q ss_pred CcccchhcccchhcccCCCCCCCccEEEccCCcCccchhhcCCCCCCcEEECCCCCCCCCcCcCCCCCCCEEECCCCCCC
Q 002315 147 TNALRHVFASRIVEIKDSPQWNRLSFVSCSCNRLVIMDESLQLLPAVETLDLSRNKFAKVDNLRKCVNLKHLDLGFNNLR 226 (937)
Q Consensus 147 L~~L~~l~~~~i~~l~~l~~l~~L~~L~Ls~N~Ls~LP~sL~~L~~L~~LdLs~N~L~~l~~L~~L~~L~~LdLS~N~Lt 226 (937)
+..++.. .++|+.|++++|.+..+| .+..+++|++|++++|+++.++.+ +++|+.|++++|.++
T Consensus 207 l~~l~~~-------------~~~L~~L~l~~n~l~~lp-~~~~l~~L~~L~l~~N~l~~l~~~--~~~L~~L~l~~N~l~ 270 (454)
T 1jl5_A 207 LKKLPDL-------------PLSLESIVAGNNILEELP-ELQNLPFLTTIYADNNLLKTLPDL--PPSLEALNVRDNYLT 270 (454)
T ss_dssp CSSCCCC-------------CTTCCEEECCSSCCSSCC-CCTTCTTCCEEECCSSCCSSCCSC--CTTCCEEECCSSCCS
T ss_pred CCcCCCC-------------cCcccEEECcCCcCCccc-ccCCCCCCCEEECCCCcCCccccc--ccccCEEECCCCccc
Confidence 5443321 136777777777777666 366777777777777777665532 356666666666666
Q ss_pred CcccccccccccceecccCccccccccCC-----------------CC-CCCCEEEccCCCCCCCchhhhhcCCCCCCEE
Q 002315 227 SIAAFSEVSCHIVKLVLRNNALTTLRGIE-----------------NL-KSLEGLDISYNIISTFSELEFLASLPYLLNL 288 (937)
Q Consensus 227 ~L~~l~~~l~sL~~L~Ls~N~Lt~Lp~L~-----------------~L-~sL~~LdLS~N~Ls~l~~l~~L~~L~sL~~L 288 (937)
.++.. +++|+.|++++|.+++++.+. .+ ++|+.|+|++|++++++. .+++|+.|
T Consensus 271 ~l~~~---~~~L~~L~ls~N~l~~l~~~~~~L~~L~l~~N~l~~i~~~~~~L~~L~Ls~N~l~~lp~-----~~~~L~~L 342 (454)
T 1jl5_A 271 DLPEL---PQSLTFLDVSENIFSGLSELPPNLYYLNASSNEIRSLCDLPPSLEELNVSNNKLIELPA-----LPPRLERL 342 (454)
T ss_dssp CCCCC---CTTCCEEECCSSCCSEESCCCTTCCEEECCSSCCSEECCCCTTCCEEECCSSCCSCCCC-----CCTTCCEE
T ss_pred ccCcc---cCcCCEEECcCCccCcccCcCCcCCEEECcCCcCCcccCCcCcCCEEECCCCccccccc-----cCCcCCEE
Confidence 65442 245555555555555433211 12 366666666666666542 24667777
Q ss_pred EecCCCCCCCcchhhhHhhhcCCCceeccCCccCCh
Q 002315 289 WLEGNPLCCSRWYRAQVFSYFAHPAKLKVDGKEIST 324 (937)
Q Consensus 289 ~Ls~NpLt~~~~~r~~~~~~l~~L~~L~LdgN~Is~ 324 (937)
++++|.++..+. .++.|+.++|++|+++.
T Consensus 343 ~L~~N~l~~lp~-------~l~~L~~L~L~~N~l~~ 371 (454)
T 1jl5_A 343 IASFNHLAEVPE-------LPQNLKQLHVEYNPLRE 371 (454)
T ss_dssp ECCSSCCSCCCC-------CCTTCCEEECCSSCCSS
T ss_pred ECCCCccccccc-------hhhhccEEECCCCCCCc
Confidence 777777764442 24667777777777653
No 71
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.79 E-value=1e-18 Score=189.55 Aligned_cols=203 Identities=20% Similarity=0.176 Sum_probs=171.4
Q ss_pred CCCCCCCCcEEEeeCCCCCccchhhHhhhhhhhhhhhccCCCcccchhcccchhcccCCCCCCCccEEEccCCcCccchh
Q 002315 106 SLLPFCRLKVLELRGCDLSTSAAKGLLELRHTLEKIICHNSTNALRHVFASRIVEIKDSPQWNRLSFVSCSCNRLVIMDE 185 (937)
Q Consensus 106 sLs~L~~L~~LdLS~N~Ls~~lp~~L~~L~~Ll~LlL~~N~L~~L~~l~~~~i~~l~~l~~l~~L~~L~Ls~N~Ls~LP~ 185 (937)
.+..+++|+.|++++|.++. +|..+. +.+..+.+.+|.+..+.... +..+++|+.|+|++|.|+.++.
T Consensus 5 ~~~~l~~l~~l~~~~~~l~~-ip~~~~--~~l~~L~L~~N~l~~~~~~~---------~~~l~~L~~L~L~~n~l~~~~~ 72 (290)
T 1p9a_G 5 EVSKVASHLEVNCDKRNLTA-LPPDLP--KDTTILHLSENLLYTFSLAT---------LMPYTRLTQLNLDRAELTKLQV 72 (290)
T ss_dssp EEECSTTCCEEECTTSCCSS-CCSCCC--TTCCEEECTTSCCSEEEGGG---------GTTCTTCCEEECTTSCCCEEEC
T ss_pred cccccCCccEEECCCCCCCc-CCCCCC--CCCCEEEcCCCcCCccCHHH---------hhcCCCCCEEECCCCccCcccC
Confidence 36788999999999999986 554443 46778889999877664322 2357899999999999998876
Q ss_pred hcCCCCCCcEEECCCCCCCCCc-CcCCCCCCCEEECCCCCCCCccc-ccccccccceecccCccccccc--cCCCCCCCC
Q 002315 186 SLQLLPAVETLDLSRNKFAKVD-NLRKCVNLKHLDLGFNNLRSIAA-FSEVSCHIVKLVLRNNALTTLR--GIENLKSLE 261 (937)
Q Consensus 186 sL~~L~~L~~LdLs~N~L~~l~-~L~~L~~L~~LdLS~N~Lt~L~~-l~~~l~sL~~L~Ls~N~Lt~Lp--~L~~L~sL~ 261 (937)
. ..+++|++|+|++|.|..++ .+..+++|++|+|++|.|+.+++ .+..+++|+.|+|++|+|+.++ .+..+++|+
T Consensus 73 ~-~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~ 151 (290)
T 1p9a_G 73 D-GTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLE 151 (290)
T ss_dssp C-SCCTTCCEEECCSSCCSSCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCC
T ss_pred C-CCCCcCCEEECCCCcCCcCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCC
Confidence 4 78999999999999999987 57889999999999999999875 4567799999999999999986 478999999
Q ss_pred EEEccCCCCCCCchhhhhcCCCCCCEEEecCCCCCCCcchhhhHhhhcCCCceeccCCccCChhh
Q 002315 262 GLDISYNIISTFSELEFLASLPYLLNLWLEGNPLCCSRWYRAQVFSYFAHPAKLKVDGKEISTRE 326 (937)
Q Consensus 262 ~LdLS~N~Ls~l~~l~~L~~L~sL~~L~Ls~NpLt~~~~~r~~~~~~l~~L~~L~LdgN~Is~~e 326 (937)
.|+|++|+|+.++. ..+..+++|+.|+|++|+++..+ ..+.....|+.++|.+|++.|..
T Consensus 152 ~L~L~~N~l~~l~~-~~~~~l~~L~~L~L~~N~l~~ip----~~~~~~~~L~~l~L~~Np~~C~c 211 (290)
T 1p9a_G 152 KLSLANNNLTELPA-GLLNGLENLDTLLLQENSLYTIP----KGFFGSHLLPFAFLHGNPWLCNC 211 (290)
T ss_dssp EEECTTSCCSCCCT-TTTTTCTTCCEEECCSSCCCCCC----TTTTTTCCCSEEECCSCCBCCSG
T ss_pred EEECCCCcCCccCH-HHhcCcCCCCEEECCCCcCCccC----hhhcccccCCeEEeCCCCccCcC
Confidence 99999999999885 56788999999999999998665 22345668999999999998865
No 72
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.79 E-value=1.3e-20 Score=210.87 Aligned_cols=214 Identities=17% Similarity=0.186 Sum_probs=118.3
Q ss_pred HHHhcCCCCCcEEEccCCCC---CCCCCCCC-------CCCCCCcEEEeeCCCCCc----cchhhHhhhhhhhhhhhccC
Q 002315 80 RRILKLLTSLKVVSALPPPA---RDPTPLSL-------LPFCRLKVLELRGCDLST----SAAKGLLELRHTLEKIICHN 145 (937)
Q Consensus 80 p~~L~~L~~Lk~LdLs~N~I---s~~iP~sL-------s~L~~L~~LdLS~N~Ls~----~lp~~L~~L~~Ll~LlL~~N 145 (937)
+..+..+++|+.|+|++|.+ .+.+|..+ ..+++|++|+|++|.|+. .+|..+..+
T Consensus 53 ~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~----------- 121 (386)
T 2ca6_A 53 SENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKH----------- 121 (386)
T ss_dssp HHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTTTHHHHHHHHHHC-----------
T ss_pred HHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCCHHHHHHHHHHHHhC-----------
Confidence 33455666777777666433 33334333 566667777777776665 233333333
Q ss_pred CCcccchhcccchhcccCCCCCCCccEEEccCCcCc-----cchhhcCCC---------CCCcEEECCCCCCCC--Cc--
Q 002315 146 STNALRHVFASRIVEIKDSPQWNRLSFVSCSCNRLV-----IMDESLQLL---------PAVETLDLSRNKFAK--VD-- 207 (937)
Q Consensus 146 ~L~~L~~l~~~~i~~l~~l~~l~~L~~L~Ls~N~Ls-----~LP~sL~~L---------~~L~~LdLs~N~L~~--l~-- 207 (937)
++|++|+|++|.|+ .++..+..+ ++|++|+|++|.|+. ++
T Consensus 122 ----------------------~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l 179 (386)
T 2ca6_A 122 ----------------------TPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEW 179 (386)
T ss_dssp ----------------------TTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHH
T ss_pred ----------------------CCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHH
Confidence 45666666666665 222233333 666666666666652 22
Q ss_pred --CcCCCCCCCEEECCCCCCCC------cccccccccccceecccCcccc-----ccc-cCCCCCCCCEEEccCCCCCCC
Q 002315 208 --NLRKCVNLKHLDLGFNNLRS------IAAFSEVSCHIVKLVLRNNALT-----TLR-GIENLKSLEGLDISYNIISTF 273 (937)
Q Consensus 208 --~L~~L~~L~~LdLS~N~Lt~------L~~l~~~l~sL~~L~Ls~N~Lt-----~Lp-~L~~L~sL~~LdLS~N~Ls~l 273 (937)
.+..+++|+.|+|++|.|+. ++.....+++|+.|+|++|.|+ .++ .+..+++|+.|+|++|.|+..
T Consensus 180 ~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~ 259 (386)
T 2ca6_A 180 AKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSAR 259 (386)
T ss_dssp HHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHH
T ss_pred HHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchh
Confidence 34455666667776666661 1213344566677777777663 233 556667777777777776653
Q ss_pred chh---hhh--cCCCCCCEEEecCCCCCCC--cchhhhHhhhcCCCceeccCCccCChhh
Q 002315 274 SEL---EFL--ASLPYLLNLWLEGNPLCCS--RWYRAQVFSYFAHPAKLKVDGKEISTRE 326 (937)
Q Consensus 274 ~~l---~~L--~~L~sL~~L~Ls~NpLt~~--~~~r~~~~~~l~~L~~L~LdgN~Is~~e 326 (937)
... ..+ ..+++|+.|+|++|+++.. ..+...++..++.|+.|+|.+|+++...
T Consensus 260 ~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~ 319 (386)
T 2ca6_A 260 GAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEED 319 (386)
T ss_dssp HHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTS
T ss_pred hHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcch
Confidence 111 233 2366777777777776531 0111222244567777777777776555
No 73
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.79 E-value=1.4e-19 Score=196.84 Aligned_cols=202 Identities=20% Similarity=0.162 Sum_probs=152.8
Q ss_pred CCCCCcEEEccCCCCCCCCCCCC--CCCCCCcEEEeeCCCCCccchhhHhhhhhhhhhhhccCCCcccchhcccchhccc
Q 002315 85 LLTSLKVVSALPPPARDPTPLSL--LPFCRLKVLELRGCDLSTSAAKGLLELRHTLEKIICHNSTNALRHVFASRIVEIK 162 (937)
Q Consensus 85 ~L~~Lk~LdLs~N~Is~~iP~sL--s~L~~L~~LdLS~N~Ls~~lp~~L~~L~~Ll~LlL~~N~L~~L~~l~~~~i~~l~ 162 (937)
.+++|++|+|++|.+.+..|..+ ..+++|++|+|++|.+++..+. +....
T Consensus 89 ~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~-~~~~~--------------------------- 140 (310)
T 4glp_A 89 AYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSW-LAELQ--------------------------- 140 (310)
T ss_dssp HHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSS-HHHHH---------------------------
T ss_pred ccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhh-hHHHH---------------------------
Confidence 35779999999999999999888 8999999999999999864331 11000
Q ss_pred CCCCCCCccEEEccCCcCccch-hhcCCCCCCcEEECCCCCCCC---Cc---CcCCCCCCCEEECCCCCCCCcccc----
Q 002315 163 DSPQWNRLSFVSCSCNRLVIMD-ESLQLLPAVETLDLSRNKFAK---VD---NLRKCVNLKHLDLGFNNLRSIAAF---- 231 (937)
Q Consensus 163 ~l~~l~~L~~L~Ls~N~Ls~LP-~sL~~L~~L~~LdLs~N~L~~---l~---~L~~L~~L~~LdLS~N~Lt~L~~l---- 231 (937)
+..+++|++|++++|.|..++ ..+..+++|++|+|++|++.. ++ .+..+++|++|+|++|.|+.++..
T Consensus 141 -~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l 219 (310)
T 4glp_A 141 -QWLKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAAL 219 (310)
T ss_dssp -TTBCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHH
T ss_pred -hhhccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHH
Confidence 013457888888888888665 477888889999999888764 21 346788888899999888876652
Q ss_pred cccccccceecccCcccccc-c-cCCCC---CCCCEEEccCCCCCCCchhhhhcCCCCCCEEEecCCCCCCCcchhhhHh
Q 002315 232 SEVSCHIVKLVLRNNALTTL-R-GIENL---KSLEGLDISYNIISTFSELEFLASLPYLLNLWLEGNPLCCSRWYRAQVF 306 (937)
Q Consensus 232 ~~~l~sL~~L~Ls~N~Lt~L-p-~L~~L---~sL~~LdLS~N~Ls~l~~l~~L~~L~sL~~L~Ls~NpLt~~~~~r~~~~ 306 (937)
...+++|++|+|++|.|+.+ | .+..+ ++|++|+|++|+|+.+|. .+ .++|+.|+|++|+++..+. +
T Consensus 220 ~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~~lp~--~~--~~~L~~L~Ls~N~l~~~~~-----~ 290 (310)
T 4glp_A 220 AAAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLEQVPK--GL--PAKLRVLDLSSNRLNRAPQ-----P 290 (310)
T ss_dssp HHHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCCSCCS--CC--CSCCSCEECCSCCCCSCCC-----T
T ss_pred HhcCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCCchhh--hh--cCCCCEEECCCCcCCCCch-----h
Confidence 34557888999999988885 3 45554 688899999998888763 23 3788889999998875532 3
Q ss_pred hhcCCCceeccCCccCCh
Q 002315 307 SYFAHPAKLKVDGKEIST 324 (937)
Q Consensus 307 ~~l~~L~~L~LdgN~Is~ 324 (937)
..++.|+.|+|++|+++.
T Consensus 291 ~~l~~L~~L~L~~N~l~~ 308 (310)
T 4glp_A 291 DELPEVDNLTLDGNPFLV 308 (310)
T ss_dssp TSCCCCSCEECSSTTTSC
T ss_pred hhCCCccEEECcCCCCCC
Confidence 467888888999988874
No 74
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.79 E-value=3.8e-19 Score=185.93 Aligned_cols=186 Identities=13% Similarity=0.161 Sum_probs=99.2
Q ss_pred chHHHHHhcCCCCCcEEEccCCCCCCCCCCCCCCCCCCcEEEeeCCC-CCccchhhHhhhhhhhhhhhcc-CCCcccchh
Q 002315 76 LEQLRRILKLLTSLKVVSALPPPARDPTPLSLLPFCRLKVLELRGCD-LSTSAAKGLLELRHTLEKIICH-NSTNALRHV 153 (937)
Q Consensus 76 le~Lp~~L~~L~~Lk~LdLs~N~Is~~iP~sLs~L~~L~~LdLS~N~-Ls~~lp~~L~~L~~Ll~LlL~~-N~L~~L~~l 153 (937)
+..+|. + .++|+.|+|++|.++...+..|..+++|++|+|++|. ++...+..|..+++|..+.+.+ |.+..++..
T Consensus 23 l~~ip~-~--~~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~ 99 (239)
T 2xwt_C 23 IQRIPS-L--PPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPD 99 (239)
T ss_dssp CSSCCC-C--CTTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTT
T ss_pred ccccCC-C--CCcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHH
Confidence 444554 2 3489999999999988877789999999999999997 8775555565555444444444 443333321
Q ss_pred cccchhcccCCCCCCCccEEEccCCcCccchhhcCCCCCCc---EEECCCC-CCCCCc--CcCCCCCCC-EEECCCCCCC
Q 002315 154 FASRIVEIKDSPQWNRLSFVSCSCNRLVIMDESLQLLPAVE---TLDLSRN-KFAKVD--NLRKCVNLK-HLDLGFNNLR 226 (937)
Q Consensus 154 ~~~~i~~l~~l~~l~~L~~L~Ls~N~Ls~LP~sL~~L~~L~---~LdLs~N-~L~~l~--~L~~L~~L~-~LdLS~N~Lt 226 (937)
.+ ..+++|++|++++|.++.+|. +..+++|+ +|++++| .++.++ .|..+++|+ .|+|++|.++
T Consensus 100 ~f---------~~l~~L~~L~l~~n~l~~lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~ 169 (239)
T 2xwt_C 100 AL---------KELPLLKFLGIFNTGLKMFPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFT 169 (239)
T ss_dssp SE---------ECCTTCCEEEEEEECCCSCCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCC
T ss_pred Hh---------CCCCCCCEEeCCCCCCccccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCc
Confidence 11 123344444554444444443 44444444 4444444 444432 244444444 4444444444
Q ss_pred CcccccccccccceecccCcc-ccccc--cCCCC-CCCCEEEccCCCCCCCc
Q 002315 227 SIAAFSEVSCHIVKLVLRNNA-LTTLR--GIENL-KSLEGLDISYNIISTFS 274 (937)
Q Consensus 227 ~L~~l~~~l~sL~~L~Ls~N~-Lt~Lp--~L~~L-~sL~~LdLS~N~Ls~l~ 274 (937)
.++......++|+.|+|++|+ |+.++ .+..+ ++|+.|+|++|.|+.++
T Consensus 170 ~i~~~~~~~~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~l~ 221 (239)
T 2xwt_C 170 SVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALP 221 (239)
T ss_dssp EECTTTTTTCEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCCCCC
T ss_pred ccCHhhcCCCCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCccccCC
Confidence 444322222344444444442 44442 33444 44444444444444443
No 75
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.78 E-value=1.1e-18 Score=190.41 Aligned_cols=207 Identities=22% Similarity=0.264 Sum_probs=179.3
Q ss_pred EccCCCCCCCCCCCCCCCCCCcEEEeeCCCCCccchhhHhhhhhhhhhhhccCCCcccchhcccchhcccCCCCCCCccE
Q 002315 93 SALPPPARDPTPLSLLPFCRLKVLELRGCDLSTSAAKGLLELRHTLEKIICHNSTNALRHVFASRIVEIKDSPQWNRLSF 172 (937)
Q Consensus 93 dLs~N~Is~~iP~sLs~L~~L~~LdLS~N~Ls~~lp~~L~~L~~Ll~LlL~~N~L~~L~~l~~~~i~~l~~l~~l~~L~~ 172 (937)
.+..+.+.+. ..+..+++|+.|++++|.++. ++ .+..+++|..+.+.+|.+..++. +..+++|++
T Consensus 25 ~l~~~~~~~~--~~~~~l~~L~~L~l~~~~i~~-l~-~~~~l~~L~~L~L~~n~i~~~~~-----------~~~l~~L~~ 89 (308)
T 1h6u_A 25 AAGKSNVTDT--VTQADLDGITTLSAFGTGVTT-IE-GVQYLNNLIGLELKDNQITDLAP-----------LKNLTKITE 89 (308)
T ss_dssp HTTCSSTTSE--ECHHHHHTCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG-----------GTTCCSCCE
T ss_pred HhCCCCcCce--ecHHHcCCcCEEEeeCCCccC-ch-hhhccCCCCEEEccCCcCCCChh-----------HccCCCCCE
Confidence 3444555443 235578999999999999987 44 68899999999999998777654 236789999
Q ss_pred EEccCCcCccchhhcCCCCCCcEEECCCCCCCCCcCcCCCCCCCEEECCCCCCCCcccccccccccceecccCccccccc
Q 002315 173 VSCSCNRLVIMDESLQLLPAVETLDLSRNKFAKVDNLRKCVNLKHLDLGFNNLRSIAAFSEVSCHIVKLVLRNNALTTLR 252 (937)
Q Consensus 173 L~Ls~N~Ls~LP~sL~~L~~L~~LdLs~N~L~~l~~L~~L~~L~~LdLS~N~Lt~L~~l~~~l~sL~~L~Ls~N~Lt~Lp 252 (937)
|++++|.++.++ .+..+++|++|+|++|.++.++.+..+++|+.|+|++|.++.++. ...+++|+.|+|++|.|+.++
T Consensus 90 L~L~~n~l~~~~-~~~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~~ 167 (308)
T 1h6u_A 90 LELSGNPLKNVS-AIAGLQSIKTLDLTSTQITDVTPLAGLSNLQVLYLDLNQITNISP-LAGLTNLQYLSIGNAQVSDLT 167 (308)
T ss_dssp EECCSCCCSCCG-GGTTCTTCCEEECTTSCCCCCGGGTTCTTCCEEECCSSCCCCCGG-GGGCTTCCEEECCSSCCCCCG
T ss_pred EEccCCcCCCch-hhcCCCCCCEEECCCCCCCCchhhcCCCCCCEEECCCCccCcCcc-ccCCCCccEEEccCCcCCCCh
Confidence 999999999886 689999999999999999999889999999999999999999887 456689999999999999998
Q ss_pred cCCCCCCCCEEEccCCCCCCCchhhhhcCCCCCCEEEecCCCCCCCcchhhhHhhhcCCCceeccCCccCCh
Q 002315 253 GIENLKSLEGLDISYNIISTFSELEFLASLPYLLNLWLEGNPLCCSRWYRAQVFSYFAHPAKLKVDGKEIST 324 (937)
Q Consensus 253 ~L~~L~sL~~LdLS~N~Ls~l~~l~~L~~L~sL~~L~Ls~NpLt~~~~~r~~~~~~l~~L~~L~LdgN~Is~ 324 (937)
.+..+++|+.|+|++|.|+.++. +..+++|+.|+|++|++...+ .+..++.|+.++|++|+++.
T Consensus 168 ~l~~l~~L~~L~l~~n~l~~~~~---l~~l~~L~~L~L~~N~l~~~~-----~l~~l~~L~~L~l~~N~i~~ 231 (308)
T 1h6u_A 168 PLANLSKLTTLKADDNKISDISP---LASLPNLIEVHLKNNQISDVS-----PLANTSNLFIVTLTNQTITN 231 (308)
T ss_dssp GGTTCTTCCEEECCSSCCCCCGG---GGGCTTCCEEECTTSCCCBCG-----GGTTCTTCCEEEEEEEEEEC
T ss_pred hhcCCCCCCEEECCCCccCcChh---hcCCCCCCEEEccCCccCccc-----cccCCCCCCEEEccCCeeec
Confidence 89999999999999999999874 788999999999999998655 25678999999999999974
No 76
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.78 E-value=1.5e-18 Score=185.50 Aligned_cols=179 Identities=22% Similarity=0.324 Sum_probs=151.8
Q ss_pred hcCCCCCcEEEccCCCCCCCCCCCCCCCCCCcEEEeeCCCCCccchhhHhhhhhhhhhhhccCCCcccchhcccchhccc
Q 002315 83 LKLLTSLKVVSALPPPARDPTPLSLLPFCRLKVLELRGCDLSTSAAKGLLELRHTLEKIICHNSTNALRHVFASRIVEIK 162 (937)
Q Consensus 83 L~~L~~Lk~LdLs~N~Is~~iP~sLs~L~~L~~LdLS~N~Ls~~lp~~L~~L~~Ll~LlL~~N~L~~L~~l~~~~i~~l~ 162 (937)
+..+++|+.|++.+|.+... ..+..+++|++|+|++|.+++. + .+
T Consensus 37 ~~~l~~L~~L~l~~~~i~~~--~~l~~l~~L~~L~l~~n~l~~~-~-~l------------------------------- 81 (272)
T 3rfs_A 37 QNELNSIDQIIANNSDIKSV--QGIQYLPNVRYLALGGNKLHDI-S-AL------------------------------- 81 (272)
T ss_dssp HHHHTTCCEEECTTSCCCCC--TTGGGCTTCCEEECTTSCCCCC-G-GG-------------------------------
T ss_pred cccccceeeeeeCCCCcccc--cccccCCCCcEEECCCCCCCCc-h-hh-------------------------------
Confidence 34578999999999988754 4588899999999999998762 2 22
Q ss_pred CCCCCCCccEEEccCCcCccchh-hcCCCCCCcEEECCCCCCCCCc--CcCCCCCCCEEECCCCCCCCcccc-ccccccc
Q 002315 163 DSPQWNRLSFVSCSCNRLVIMDE-SLQLLPAVETLDLSRNKFAKVD--NLRKCVNLKHLDLGFNNLRSIAAF-SEVSCHI 238 (937)
Q Consensus 163 ~l~~l~~L~~L~Ls~N~Ls~LP~-sL~~L~~L~~LdLs~N~L~~l~--~L~~L~~L~~LdLS~N~Lt~L~~l-~~~l~sL 238 (937)
..+++|++|++++|.|+.++. .+..+++|++|+|++|.++.++ .|..+++|++|+|++|.|+.+++. +..+++|
T Consensus 82 --~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L 159 (272)
T 3rfs_A 82 --KELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNL 159 (272)
T ss_dssp --TTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC
T ss_pred --cCCCCCCEEECCCCccCccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccC
Confidence 135689999999999997765 4789999999999999999875 388999999999999999988764 4567899
Q ss_pred ceecccCccccccc--cCCCCCCCCEEEccCCCCCCCchhhhhcCCCCCCEEEecCCCCCCCc
Q 002315 239 VKLVLRNNALTTLR--GIENLKSLEGLDISYNIISTFSELEFLASLPYLLNLWLEGNPLCCSR 299 (937)
Q Consensus 239 ~~L~Ls~N~Lt~Lp--~L~~L~sL~~LdLS~N~Ls~l~~l~~L~~L~sL~~L~Ls~NpLt~~~ 299 (937)
+.|+|++|+|+.++ .+..+++|+.|+|++|.|+.+++ ..+..+++|+.|+|++|++.|.+
T Consensus 160 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~-~~~~~l~~L~~L~l~~N~~~~~~ 221 (272)
T 3rfs_A 160 TELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPD-GVFDRLTSLQYIWLHDNPWDCTC 221 (272)
T ss_dssp CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCT-TTTTTCTTCCEEECCSSCBCCCT
T ss_pred CEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCccCH-HHHhCCcCCCEEEccCCCccccC
Confidence 99999999999986 47899999999999999999875 56789999999999999998765
No 77
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.77 E-value=1.3e-18 Score=188.63 Aligned_cols=198 Identities=20% Similarity=0.211 Sum_probs=161.4
Q ss_pred cCCCCCcEEEccCCCCCCCCCCCCCCCCCCcEEEeeCCCCCccchhhHhhhhhhhhhhhccCCCcccchhcccchhcccC
Q 002315 84 KLLTSLKVVSALPPPARDPTPLSLLPFCRLKVLELRGCDLSTSAAKGLLELRHTLEKIICHNSTNALRHVFASRIVEIKD 163 (937)
Q Consensus 84 ~~L~~Lk~LdLs~N~Is~~iP~sLs~L~~L~~LdLS~N~Ls~~lp~~L~~L~~Ll~LlL~~N~L~~L~~l~~~~i~~l~~ 163 (937)
..+++|+.|++++|.+... ..+..+++|++|+|++|.+++..+ +.
T Consensus 43 ~~l~~L~~L~l~~~~i~~~--~~~~~l~~L~~L~L~~n~l~~~~~--l~------------------------------- 87 (291)
T 1h6t_A 43 NELNSIDQIIANNSDIKSV--QGIQYLPNVTKLFLNGNKLTDIKP--LA------------------------------- 87 (291)
T ss_dssp HHHHTCCEEECTTSCCCCC--TTGGGCTTCCEEECCSSCCCCCGG--GT-------------------------------
T ss_pred hhcCcccEEEccCCCcccC--hhHhcCCCCCEEEccCCccCCCcc--cc-------------------------------
Confidence 4578899999999998765 358889999999999999986332 22
Q ss_pred CCCCCCccEEEccCCcCccchhhcCCCCCCcEEECCCCCCCCCcCcCCCCCCCEEECCCCCCCCcccccccccccceecc
Q 002315 164 SPQWNRLSFVSCSCNRLVIMDESLQLLPAVETLDLSRNKFAKVDNLRKCVNLKHLDLGFNNLRSIAAFSEVSCHIVKLVL 243 (937)
Q Consensus 164 l~~l~~L~~L~Ls~N~Ls~LP~sL~~L~~L~~LdLs~N~L~~l~~L~~L~~L~~LdLS~N~Lt~L~~l~~~l~sL~~L~L 243 (937)
.+++|++|++++|.++.+|. +..+++|++|+|++|.|..++.+..+++|+.|+|++|.++.++ ....+++|+.|+|
T Consensus 88 --~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~L~~n~i~~~~~l~~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~L 163 (291)
T 1h6t_A 88 --NLKNLGWLFLDENKVKDLSS-LKDLKKLKSLSLEHNGISDINGLVHLPQLESLYLGNNKITDIT-VLSRLTKLDTLSL 163 (291)
T ss_dssp --TCTTCCEEECCSSCCCCGGG-GTTCTTCCEEECTTSCCCCCGGGGGCTTCCEEECCSSCCCCCG-GGGGCTTCSEEEC
T ss_pred --cCCCCCEEECCCCcCCCChh-hccCCCCCEEECCCCcCCCChhhcCCCCCCEEEccCCcCCcch-hhccCCCCCEEEc
Confidence 34579999999999998764 8899999999999999999988999999999999999999884 4456689999999
Q ss_pred cCccccccccCCCCCCCCEEEccCCCCCCCchhhhhcCCCCCCEEEecCCCCCCCcchhhhHhhhcCCCceeccCCccCC
Q 002315 244 RNNALTTLRGIENLKSLEGLDISYNIISTFSELEFLASLPYLLNLWLEGNPLCCSRWYRAQVFSYFAHPAKLKVDGKEIS 323 (937)
Q Consensus 244 s~N~Lt~Lp~L~~L~sL~~LdLS~N~Ls~l~~l~~L~~L~sL~~L~Ls~NpLt~~~~~r~~~~~~l~~L~~L~LdgN~Is 323 (937)
++|.|+.++.+..+++|+.|+|++|.|+.++ .+..+++|+.|+|++|+++..+.+....+...+ ....+++..++
T Consensus 164 ~~N~l~~~~~l~~l~~L~~L~L~~N~i~~l~---~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~~~--~l~~l~~~~i~ 238 (291)
T 1h6t_A 164 EDNQISDIVPLAGLTKLQNLYLSKNHISDLR---ALAGLKNLDVLELFSQECLNKPINHQSNLVVPN--TVKNTDGSLVT 238 (291)
T ss_dssp CSSCCCCCGGGTTCTTCCEEECCSSCCCBCG---GGTTCTTCSEEEEEEEEEECCCEECCSEEEEEC--CCBCTTSCBCC
T ss_pred cCCccccchhhcCCCccCEEECCCCcCCCCh---hhccCCCCCEEECcCCcccCCccccccccEEcc--eEECCCCCCcC
Confidence 9999999877999999999999999999875 378899999999999999876543332222222 33456777776
Q ss_pred hh
Q 002315 324 TR 325 (937)
Q Consensus 324 ~~ 325 (937)
..
T Consensus 239 ~~ 240 (291)
T 1h6t_A 239 PE 240 (291)
T ss_dssp EE
T ss_pred CC
Confidence 44
No 78
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.77 E-value=3.9e-18 Score=204.28 Aligned_cols=223 Identities=21% Similarity=0.189 Sum_probs=153.4
Q ss_pred ccccCCCCCcchHHHHHhcCCCCCcEEEccCCCCCCCCCCCCCCCCCCcEEEeeCCCCCccchhhHhhhhhhhhhhhccC
Q 002315 66 YVSDLGDHRALEQLRRILKLLTSLKVVSALPPPARDPTPLSLLPFCRLKVLELRGCDLSTSAAKGLLELRHTLEKIICHN 145 (937)
Q Consensus 66 ~vLdLs~n~~le~Lp~~L~~L~~Lk~LdLs~N~Is~~iP~sLs~L~~L~~LdLS~N~Ls~~lp~~L~~L~~Ll~LlL~~N 145 (937)
..++++++. +..+|..+. ++|+.|+|++|.|+.+ |. .+++|++|+|++|.|+. +|. .+++|..|.+.+|
T Consensus 43 ~~L~ls~n~-L~~lp~~l~--~~L~~L~L~~N~l~~l-p~---~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N 111 (622)
T 3g06_A 43 AVLNVGESG-LTTLPDCLP--AHITTLVIPDNNLTSL-PA---LPPELRTLEVSGNQLTS-LPV---LPPGLLELSIFSN 111 (622)
T ss_dssp CEEECCSSC-CSCCCSCCC--TTCSEEEECSCCCSCC-CC---CCTTCCEEEECSCCCSC-CCC---CCTTCCEEEECSC
T ss_pred cEEEecCCC-cCccChhhC--CCCcEEEecCCCCCCC-CC---cCCCCCEEEcCCCcCCc-CCC---CCCCCCEEECcCC
Confidence 345666655 346676544 8999999999999854 54 57999999999999986 554 6678888999999
Q ss_pred CCcccchhcc---------cchhcccCCCCCCCccEEEccCCcCccchhhcCCCCCCcEEECCCCCCCCCcCcCCCCCCC
Q 002315 146 STNALRHVFA---------SRIVEIKDSPQWNRLSFVSCSCNRLVIMDESLQLLPAVETLDLSRNKFAKVDNLRKCVNLK 216 (937)
Q Consensus 146 ~L~~L~~l~~---------~~i~~l~~l~~l~~L~~L~Ls~N~Ls~LP~sL~~L~~L~~LdLs~N~L~~l~~L~~L~~L~ 216 (937)
.+..++.... +.+..++. .+++|++|++++|.|+.+|. .+++|+.|++++|.|+.++ ..+++|+
T Consensus 112 ~l~~l~~~l~~L~~L~L~~N~l~~lp~--~l~~L~~L~Ls~N~l~~l~~---~~~~L~~L~L~~N~l~~l~--~~~~~L~ 184 (622)
T 3g06_A 112 PLTHLPALPSGLCKLWIFGNQLTSLPV--LPPGLQELSVSDNQLASLPA---LPSELCKLWAYNNQLTSLP--MLPSGLQ 184 (622)
T ss_dssp CCCCCCCCCTTCCEEECCSSCCSCCCC--CCTTCCEEECCSSCCSCCCC---CCTTCCEEECCSSCCSCCC--CCCTTCC
T ss_pred cCCCCCCCCCCcCEEECCCCCCCcCCC--CCCCCCEEECcCCcCCCcCC---ccCCCCEEECCCCCCCCCc--ccCCCCc
Confidence 8877665210 01111111 12455555555555555543 2345555555555555554 3446777
Q ss_pred EEECCCCCCCCcccccccccccceecccCccccccccCCCCCCCCEEEccCCCCCCCchhhhhcCCCCCCEEEecCCCCC
Q 002315 217 HLDLGFNNLRSIAAFSEVSCHIVKLVLRNNALTTLRGIENLKSLEGLDISYNIISTFSELEFLASLPYLLNLWLEGNPLC 296 (937)
Q Consensus 217 ~LdLS~N~Lt~L~~l~~~l~sL~~L~Ls~N~Lt~Lp~L~~L~sL~~LdLS~N~Ls~l~~l~~L~~L~sL~~L~Ls~NpLt 296 (937)
.|+|++|.|+.++.. +++|+.|++++|.|+.++.. +++|+.|+|++|.|+.++ ..+++|+.|+|++|.|+
T Consensus 185 ~L~Ls~N~l~~l~~~---~~~L~~L~L~~N~l~~l~~~--~~~L~~L~Ls~N~L~~lp-----~~l~~L~~L~Ls~N~L~ 254 (622)
T 3g06_A 185 ELSVSDNQLASLPTL---PSELYKLWAYNNRLTSLPAL--PSGLKELIVSGNRLTSLP-----VLPSELKELMVSGNRLT 254 (622)
T ss_dssp EEECCSSCCSCCCCC---CTTCCEEECCSSCCSSCCCC--CTTCCEEECCSSCCSCCC-----CCCTTCCEEECCSSCCS
T ss_pred EEECCCCCCCCCCCc---cchhhEEECcCCcccccCCC--CCCCCEEEccCCccCcCC-----CCCCcCcEEECCCCCCC
Confidence 777777777776653 35777778888877777632 478888888888888876 35678899999999887
Q ss_pred CCcchhhhHhhhcCCCceeccCCccCC
Q 002315 297 CSRWYRAQVFSYFAHPAKLKVDGKEIS 323 (937)
Q Consensus 297 ~~~~~r~~~~~~l~~L~~L~LdgN~Is 323 (937)
..+. .++.|+.|+|++|.++
T Consensus 255 ~lp~-------~~~~L~~L~Ls~N~L~ 274 (622)
T 3g06_A 255 SLPM-------LPSGLLSLSVYRNQLT 274 (622)
T ss_dssp CCCC-------CCTTCCEEECCSSCCC
T ss_pred cCCc-------ccccCcEEeCCCCCCC
Confidence 6553 4577889999999887
No 79
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.77 E-value=1.9e-19 Score=201.34 Aligned_cols=223 Identities=18% Similarity=0.126 Sum_probs=173.4
Q ss_pred chHHHHHhcCCCCCcEEEccCCCCCCCC----CCCCCCCCCCcEEEeeCCCC---CccchhhHhhhhhhhhhhhccCCCc
Q 002315 76 LEQLRRILKLLTSLKVVSALPPPARDPT----PLSLLPFCRLKVLELRGCDL---STSAAKGLLELRHTLEKIICHNSTN 148 (937)
Q Consensus 76 le~Lp~~L~~L~~Lk~LdLs~N~Is~~i----P~sLs~L~~L~~LdLS~N~L---s~~lp~~L~~L~~Ll~LlL~~N~L~ 148 (937)
+..++..+..+++|+.|+|++|.++... +..|..+++|++|+|++|.+ ++.+|.++..+...
T Consensus 21 ~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~----------- 89 (386)
T 2ca6_A 21 EKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQA----------- 89 (386)
T ss_dssp HHTTSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHH-----------
T ss_pred HHHHHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHH-----------
Confidence 5566778888999999999999997753 34588899999999999754 44556666544310
Q ss_pred ccchhcccchhcccCCCCCCCccEEEccCCcCcc-----chhhcCCCCCCcEEECCCCCCCCCc------CcCCC-----
Q 002315 149 ALRHVFASRIVEIKDSPQWNRLSFVSCSCNRLVI-----MDESLQLLPAVETLDLSRNKFAKVD------NLRKC----- 212 (937)
Q Consensus 149 ~L~~l~~~~i~~l~~l~~l~~L~~L~Ls~N~Ls~-----LP~sL~~L~~L~~LdLs~N~L~~l~------~L~~L----- 212 (937)
+..+++|++|+|++|.|.. +|..+..+++|++|+|++|.|.... .+..+
T Consensus 90 ---------------l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~ 154 (386)
T 2ca6_A 90 ---------------LLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKK 154 (386)
T ss_dssp ---------------HTTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHH
T ss_pred ---------------HhhCCcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhh
Confidence 1245789999999999985 7888999999999999999997421 23344
Q ss_pred ----CCCCEEECCCCCCC--Cccc---ccccccccceecccCccccc------cc-cCCCCCCCCEEEccCCCCC-----
Q 002315 213 ----VNLKHLDLGFNNLR--SIAA---FSEVSCHIVKLVLRNNALTT------LR-GIENLKSLEGLDISYNIIS----- 271 (937)
Q Consensus 213 ----~~L~~LdLS~N~Lt--~L~~---l~~~l~sL~~L~Ls~N~Lt~------Lp-~L~~L~sL~~LdLS~N~Ls----- 271 (937)
++|++|+|++|.|+ .++. ....+++|+.|+|++|+|+. ++ .+..+++|+.|+|++|.|+
T Consensus 155 ~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~ 234 (386)
T 2ca6_A 155 AKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSS 234 (386)
T ss_dssp HHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHH
T ss_pred cccCCCCcEEECCCCCCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHH
Confidence 89999999999997 3442 33456899999999999983 35 7889999999999999995
Q ss_pred CCchhhhhcCCCCCCEEEecCCCCCCCcch-hhhHhhh--cCCCceeccCCccCChhh
Q 002315 272 TFSELEFLASLPYLLNLWLEGNPLCCSRWY-RAQVFSY--FAHPAKLKVDGKEISTRE 326 (937)
Q Consensus 272 ~l~~l~~L~~L~sL~~L~Ls~NpLt~~~~~-r~~~~~~--l~~L~~L~LdgN~Is~~e 326 (937)
.++ ..+..+++|+.|+|++|.++..... ....+.. ++.|+.|+|.+|.++...
T Consensus 235 ~l~--~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g 290 (386)
T 2ca6_A 235 ALA--IALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDA 290 (386)
T ss_dssp HHH--HHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHH
T ss_pred HHH--HHHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHH
Confidence 333 5678899999999999999754211 1233433 789999999999999754
No 80
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.76 E-value=3.9e-18 Score=181.86 Aligned_cols=177 Identities=20% Similarity=0.185 Sum_probs=145.5
Q ss_pred CCCcEEEccCCCCCCCCCCCCCCCCCCcEEEeeCCCCCccchhhHhhhhhhhhhhhccCCCcccchhcccchhcccCCCC
Q 002315 87 TSLKVVSALPPPARDPTPLSLLPFCRLKVLELRGCDLSTSAAKGLLELRHTLEKIICHNSTNALRHVFASRIVEIKDSPQ 166 (937)
Q Consensus 87 ~~Lk~LdLs~N~Is~~iP~sLs~L~~L~~LdLS~N~Ls~~lp~~L~~L~~Ll~LlL~~N~L~~L~~l~~~~i~~l~~l~~ 166 (937)
++|+.|+|++|.+....+..|..+++|++|+|++|.|+...+..|..+++|.++.+.+|.+..++... +..
T Consensus 37 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~---------~~~ 107 (270)
T 2o6q_A 37 ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALPIGV---------FDQ 107 (270)
T ss_dssp TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSSCCCCCCTTT---------TTT
T ss_pred CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCCcCCcCCHhH---------ccc
Confidence 56788888888887776667888888888888888887655555677777777777777766554322 235
Q ss_pred CCCccEEEccCCcCccchh-hcCCCCCCcEEECCCCCCCCCc--CcCCCCCCCEEECCCCCCCCcccc-cccccccceec
Q 002315 167 WNRLSFVSCSCNRLVIMDE-SLQLLPAVETLDLSRNKFAKVD--NLRKCVNLKHLDLGFNNLRSIAAF-SEVSCHIVKLV 242 (937)
Q Consensus 167 l~~L~~L~Ls~N~Ls~LP~-sL~~L~~L~~LdLs~N~L~~l~--~L~~L~~L~~LdLS~N~Lt~L~~l-~~~l~sL~~L~ 242 (937)
+++|++|++++|.++.+|. .|..+++|++|+|++|.|+.++ .|..+++|+.|+|++|.|+.+++. +..+++|+.|+
T Consensus 108 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 187 (270)
T 2o6q_A 108 LVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLK 187 (270)
T ss_dssp CSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEE
T ss_pred ccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeChhHhccCCCcCEEE
Confidence 6789999999999997765 5789999999999999999986 488999999999999999998863 45678999999
Q ss_pred ccCccccccc--cCCCCCCCCEEEccCCCCCC
Q 002315 243 LRNNALTTLR--GIENLKSLEGLDISYNIIST 272 (937)
Q Consensus 243 Ls~N~Lt~Lp--~L~~L~sL~~LdLS~N~Ls~ 272 (937)
|++|.|+.++ .+..+++|+.|+|++|.+..
T Consensus 188 L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c 219 (270)
T 2o6q_A 188 LDNNQLKRVPEGAFDSLEKLKMLQLQENPWDC 219 (270)
T ss_dssp CCSSCCSCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred CCCCcCCcCCHHHhccccCCCEEEecCCCeeC
Confidence 9999999986 58889999999999999865
No 81
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.75 E-value=1.5e-17 Score=175.60 Aligned_cols=175 Identities=22% Similarity=0.310 Sum_probs=140.3
Q ss_pred CCCcEEEccCCCCCCCCCCCCCCCCCCcEEEeeCCCCCccchhhHhhhhhhhhhhhccCCCcccchhcccchhcccCCCC
Q 002315 87 TSLKVVSALPPPARDPTPLSLLPFCRLKVLELRGCDLSTSAAKGLLELRHTLEKIICHNSTNALRHVFASRIVEIKDSPQ 166 (937)
Q Consensus 87 ~~Lk~LdLs~N~Is~~iP~sLs~L~~L~~LdLS~N~Ls~~lp~~L~~L~~Ll~LlL~~N~L~~L~~l~~~~i~~l~~l~~ 166 (937)
...+.++++++.+.. +|..+. ++|+.|+|++|.+++..+..|. .
T Consensus 14 ~~~~~l~~~~~~l~~-~p~~~~--~~l~~L~L~~n~l~~~~~~~~~---------------------------------~ 57 (251)
T 3m19_A 14 EGKKEVDCQGKSLDS-VPSGIP--ADTEKLDLQSTGLATLSDATFR---------------------------------G 57 (251)
T ss_dssp GGGTEEECTTCCCSS-CCSCCC--TTCCEEECTTSCCCCCCTTTTT---------------------------------T
T ss_pred CCCeEEecCCCCccc-cCCCCC--CCCCEEEccCCCcCccCHhHhc---------------------------------C
Confidence 356788888888774 455554 6888888888888775554332 3
Q ss_pred CCCccEEEccCCcCccchh-hcCCCCCCcEEECCCCCCCCCc--CcCCCCCCCEEECCCCCCCCcccc-cccccccceec
Q 002315 167 WNRLSFVSCSCNRLVIMDE-SLQLLPAVETLDLSRNKFAKVD--NLRKCVNLKHLDLGFNNLRSIAAF-SEVSCHIVKLV 242 (937)
Q Consensus 167 l~~L~~L~Ls~N~Ls~LP~-sL~~L~~L~~LdLs~N~L~~l~--~L~~L~~L~~LdLS~N~Lt~L~~l-~~~l~sL~~L~ 242 (937)
+++|++|+|++|.|+.++. .|..+++|++|+|++|.|+.++ .|..+++|++|+|++|.|+.+++. +..+++|+.|+
T Consensus 58 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~ 137 (251)
T 3m19_A 58 LTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELR 137 (251)
T ss_dssp CTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred cccCCEEECCCCcCCccCHhHhccCCcCCEEECCCCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEE
Confidence 4478888888888886654 5788888999999999888875 578888999999999999888764 35678899999
Q ss_pred ccCccccccc--cCCCCCCCCEEEccCCCCCCCchhhhhcCCCCCCEEEecCCCCCCC
Q 002315 243 LRNNALTTLR--GIENLKSLEGLDISYNIISTFSELEFLASLPYLLNLWLEGNPLCCS 298 (937)
Q Consensus 243 Ls~N~Lt~Lp--~L~~L~sL~~LdLS~N~Ls~l~~l~~L~~L~sL~~L~Ls~NpLt~~ 298 (937)
|++|+|+.++ .+..+++|++|+|++|.|+.++. ..+..+++|+.|+|++|++.|.
T Consensus 138 Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~-~~~~~l~~L~~L~l~~N~~~c~ 194 (251)
T 3m19_A 138 LNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPH-GAFDRLGKLQTITLFGNQFDCS 194 (251)
T ss_dssp CCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCT-TTTTTCTTCCEEECCSCCBCTT
T ss_pred CcCCcCCccCHHHcCcCcCCCEEECCCCcCCccCH-HHHhCCCCCCEEEeeCCceeCC
Confidence 9999998876 58889999999999999998875 5688899999999999999887
No 82
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.75 E-value=5.3e-19 Score=192.33 Aligned_cols=196 Identities=19% Similarity=0.145 Sum_probs=143.9
Q ss_pred cccccCCCCCcchHHHHHh--cCCCCCcEEEccCCCCCCCCC----CCCCCCCCCcEEEeeCCCCCccchhhHhhhhhhh
Q 002315 65 AYVSDLGDHRALEQLRRIL--KLLTSLKVVSALPPPARDPTP----LSLLPFCRLKVLELRGCDLSTSAAKGLLELRHTL 138 (937)
Q Consensus 65 l~vLdLs~n~~le~Lp~~L--~~L~~Lk~LdLs~N~Is~~iP----~sLs~L~~L~~LdLS~N~Ls~~lp~~L~~L~~Ll 138 (937)
+..+++++|...+..|..+ ..+++|+.|+|++|.+.+..+ ..+..+++|++|+|++|.+++..+..|..
T Consensus 93 L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~----- 167 (310)
T 4glp_A 93 LKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRA----- 167 (310)
T ss_dssp CCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCC-----
T ss_pred eeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhcc-----
Confidence 3446677777777777766 889999999999999987655 44567999999999999998765554433
Q ss_pred hhhhccCCCcccchhcccchhcccCCCCCCCccEEEccCCcCcc---chh--hcCCCCCCcEEECCCCCCCCCcC-----
Q 002315 139 EKIICHNSTNALRHVFASRIVEIKDSPQWNRLSFVSCSCNRLVI---MDE--SLQLLPAVETLDLSRNKFAKVDN----- 208 (937)
Q Consensus 139 ~LlL~~N~L~~L~~l~~~~i~~l~~l~~l~~L~~L~Ls~N~Ls~---LP~--sL~~L~~L~~LdLs~N~L~~l~~----- 208 (937)
+++|++|+|++|++.. ++. .+..+++|++|+|++|+|+.++.
T Consensus 168 ----------------------------l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l 219 (310)
T 4glp_A 168 ----------------------------FPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAAL 219 (310)
T ss_dssp ----------------------------CTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHH
T ss_pred ----------------------------CCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHH
Confidence 4467778888877652 332 23567788888888888876542
Q ss_pred cCCCCCCCEEECCCCCCCCc-ccccccc---cccceecccCccccccccCCCCCCCCEEEccCCCCCCCchhhhhcCCCC
Q 002315 209 LRKCVNLKHLDLGFNNLRSI-AAFSEVS---CHIVKLVLRNNALTTLRGIENLKSLEGLDISYNIISTFSELEFLASLPY 284 (937)
Q Consensus 209 L~~L~~L~~LdLS~N~Lt~L-~~l~~~l---~sL~~L~Ls~N~Lt~Lp~L~~L~sL~~LdLS~N~Ls~l~~l~~L~~L~s 284 (937)
+..+++|++|+|++|.|+.+ |.....+ ++|+.|+|++|+|+.+|... .++|+.|+|++|+|++++. +..+++
T Consensus 220 ~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~-~~~L~~L~Ls~N~l~~~~~---~~~l~~ 295 (310)
T 4glp_A 220 AAAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLEQVPKGL-PAKLRVLDLSSNRLNRAPQ---PDELPE 295 (310)
T ss_dssp HHHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCCSCCSCC-CSCCSCEECCSCCCCSCCC---TTSCCC
T ss_pred HhcCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCCchhhhh-cCCCCEEECCCCcCCCCch---hhhCCC
Confidence 35677888888888888776 4333332 68888888888888776211 2788888888888888753 567788
Q ss_pred CCEEEecCCCCCC
Q 002315 285 LLNLWLEGNPLCC 297 (937)
Q Consensus 285 L~~L~Ls~NpLt~ 297 (937)
|+.|+|++|+|+.
T Consensus 296 L~~L~L~~N~l~~ 308 (310)
T 4glp_A 296 VDNLTLDGNPFLV 308 (310)
T ss_dssp CSCEECSSTTTSC
T ss_pred ccEEECcCCCCCC
Confidence 8888888888864
No 83
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.75 E-value=1.1e-18 Score=194.20 Aligned_cols=256 Identities=15% Similarity=0.116 Sum_probs=187.3
Q ss_pred cCCCCCcchHHHHHhcCCCCCcEEEccCCCCCCCCC----CCCCCCC-CCcEEEeeCCCCCccchhhHhhh-----hhhh
Q 002315 69 DLGDHRALEQLRRILKLLTSLKVVSALPPPARDPTP----LSLLPFC-RLKVLELRGCDLSTSAAKGLLEL-----RHTL 138 (937)
Q Consensus 69 dLs~n~~le~Lp~~L~~L~~Lk~LdLs~N~Is~~iP----~sLs~L~-~L~~LdLS~N~Ls~~lp~~L~~L-----~~Ll 138 (937)
+++.+...+.+|..+...++|+.|+|++|.+++..+ ..|..++ +|++|+|++|.|++..+..+..+ +++.
T Consensus 4 ~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~ 83 (362)
T 3goz_A 4 KLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVT 83 (362)
T ss_dssp ECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCC
T ss_pred ccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCcc
Confidence 456666667778877777789999999998887766 6777888 89999999999888777777776 7888
Q ss_pred hhhhccCCCcccchhc-ccchhcccCCCCC-CCccEEEccCCcCccchh-----hcCCC-CCCcEEECCCCCCCCC----
Q 002315 139 EKIICHNSTNALRHVF-ASRIVEIKDSPQW-NRLSFVSCSCNRLVIMDE-----SLQLL-PAVETLDLSRNKFAKV---- 206 (937)
Q Consensus 139 ~LlL~~N~L~~L~~l~-~~~i~~l~~l~~l-~~L~~L~Ls~N~Ls~LP~-----sL~~L-~~L~~LdLs~N~L~~l---- 206 (937)
++.+.+|.+....... ...+ ..+ ++|+.|++++|.|+..+. .+..+ ++|++|+|++|.|+..
T Consensus 84 ~L~Ls~n~l~~~~~~~l~~~l------~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~ 157 (362)
T 3goz_A 84 SLNLSGNFLSYKSSDELVKTL------AAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDE 157 (362)
T ss_dssp EEECCSSCGGGSCHHHHHHHH------HTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHH
T ss_pred EEECcCCcCChHHHHHHHHHH------HhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHH
Confidence 8888888766443221 1111 123 589999999999985543 34453 6999999999999853
Q ss_pred --cCcCCCC-CCCEEECCCCCCCCccc-----ccccc-cccceecccCccccc-----cc-cCCC-CCCCCEEEccCCCC
Q 002315 207 --DNLRKCV-NLKHLDLGFNNLRSIAA-----FSEVS-CHIVKLVLRNNALTT-----LR-GIEN-LKSLEGLDISYNII 270 (937)
Q Consensus 207 --~~L~~L~-~L~~LdLS~N~Lt~L~~-----l~~~l-~sL~~L~Ls~N~Lt~-----Lp-~L~~-L~sL~~LdLS~N~L 270 (937)
..+..++ +|++|+|++|.|+.... ....+ ++|+.|+|++|.|+. ++ .+.. .++|+.|+|++|.|
T Consensus 158 l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l 237 (362)
T 3goz_A 158 LIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCL 237 (362)
T ss_dssp HHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCC
T ss_pred HHHHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCC
Confidence 1345555 99999999999987553 22233 489999999999988 33 4444 46999999999999
Q ss_pred CCCch---hhhhcCCCCCCEEEecCCCCCCCcch----hhhHhhhcCCCceeccCCccCChhhHHHH
Q 002315 271 STFSE---LEFLASLPYLLNLWLEGNPLCCSRWY----RAQVFSYFAHPAKLKVDGKEISTRELWER 330 (937)
Q Consensus 271 s~l~~---l~~L~~L~sL~~L~Ls~NpLt~~~~~----r~~~~~~l~~L~~L~LdgN~Is~~e~~~~ 330 (937)
+..+. ...+..+++|+.|+|++|.+...... ....+..++.|+.++|++|++........
T Consensus 238 ~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~~~~~~~ 304 (362)
T 3goz_A 238 HGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPSHSIPI 304 (362)
T ss_dssp CCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCGGGCHHH
T ss_pred CcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCCCcchHHH
Confidence 98754 13457789999999999996544211 11234456678899999999987754443
No 84
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.74 E-value=8.1e-19 Score=199.31 Aligned_cols=267 Identities=21% Similarity=0.181 Sum_probs=136.4
Q ss_pred hcCCcEEEecCCCcc-----chHhhhhhcccchhccCCCC-Cc---------cc-----ccccccCCCCCcc----hHHH
Q 002315 25 IEGSIVLKLNPAGLH-----YVQSRLEALRELERLLAGAP-LD---------YL-----RAYVSDLGDHRAL----EQLR 80 (937)
Q Consensus 25 L~~l~~L~L~~~~L~-----~Lp~~L~~L~~Le~L~~g~~-L~---------~L-----~l~vLdLs~n~~l----e~Lp 80 (937)
+..++.|++..+.+. .++..+..++.|+.|..... +. .+ .+..+++++|... ..++
T Consensus 27 ~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~ 106 (461)
T 1z7x_W 27 LQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLS 106 (461)
T ss_dssp HTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHHHHH
T ss_pred cCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhhCCCceeEEEccCCCCCHHHHHHHH
Confidence 457788888888887 45666666666655544211 10 01 2445566665544 2556
Q ss_pred HHhcCCCCCcEEEccCCCCCCCCCCC-----CCCCCCCcEEEeeCCCCCccc----hhhHhhhhhhhhhhhccCCCcccc
Q 002315 81 RILKLLTSLKVVSALPPPARDPTPLS-----LLPFCRLKVLELRGCDLSTSA----AKGLLELRHTLEKIICHNSTNALR 151 (937)
Q Consensus 81 ~~L~~L~~Lk~LdLs~N~Is~~iP~s-----Ls~L~~L~~LdLS~N~Ls~~l----p~~L~~L~~Ll~LlL~~N~L~~L~ 151 (937)
..+..+++|+.|+|++|.+.+..+.. +..+++|++|+|++|.++... +..+..++++.++.+.+|.+....
T Consensus 107 ~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~ 186 (461)
T 1z7x_W 107 STLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAG 186 (461)
T ss_dssp HHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBCHHHH
T ss_pred HHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCCcchHH
Confidence 66666667777777666664322221 122456666666666666532 444455566666666666543211
Q ss_pred hh-cccchhcccCCCCCCCccEEEccCCcCcc-----chhhcCCCCCCcEEECCCCCCCCC------cC-cCCCCCCCEE
Q 002315 152 HV-FASRIVEIKDSPQWNRLSFVSCSCNRLVI-----MDESLQLLPAVETLDLSRNKFAKV------DN-LRKCVNLKHL 218 (937)
Q Consensus 152 ~l-~~~~i~~l~~l~~l~~L~~L~Ls~N~Ls~-----LP~sL~~L~~L~~LdLs~N~L~~l------~~-L~~L~~L~~L 218 (937)
.. +...+. ...++|+.|++++|.++. ++..+..+++|++|+|++|.+... +. +..+++|+.|
T Consensus 187 ~~~l~~~l~-----~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L 261 (461)
T 1z7x_W 187 VRVLCQGLK-----DSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTL 261 (461)
T ss_dssp HHHHHHHHH-----HSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEE
T ss_pred HHHHHHHHh-----cCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEE
Confidence 10 000000 012356666666666653 445555566666666666655542 11 2235566666
Q ss_pred ECCCCCCCC-----cccccccccccceecccCcccccc-----c-c-CCCCCCCCEEEccCCCCCCCch---hhhhcCCC
Q 002315 219 DLGFNNLRS-----IAAFSEVSCHIVKLVLRNNALTTL-----R-G-IENLKSLEGLDISYNIISTFSE---LEFLASLP 283 (937)
Q Consensus 219 dLS~N~Lt~-----L~~l~~~l~sL~~L~Ls~N~Lt~L-----p-~-L~~L~sL~~LdLS~N~Ls~l~~---l~~L~~L~ 283 (937)
+|++|.|+. ++.....+++|+.|+|++|.|+.. . . ....++|+.|+|++|.++.... ...+..++
T Consensus 262 ~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~ 341 (461)
T 1z7x_W 262 WIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNR 341 (461)
T ss_dssp ECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCS
T ss_pred ECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCC
Confidence 666666554 233333345566666666655431 1 1 1122455555555555544211 12234445
Q ss_pred CCCEEEecCCCCC
Q 002315 284 YLLNLWLEGNPLC 296 (937)
Q Consensus 284 sL~~L~Ls~NpLt 296 (937)
+|+.|+|++|.+.
T Consensus 342 ~L~~L~Ls~n~i~ 354 (461)
T 1z7x_W 342 FLLELQISNNRLE 354 (461)
T ss_dssp SCCEEECCSSBCH
T ss_pred CccEEEccCCccc
Confidence 5555555555553
No 85
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.74 E-value=7.9e-18 Score=175.91 Aligned_cols=201 Identities=16% Similarity=0.146 Sum_probs=167.9
Q ss_pred CCCCCCCCCCCCcEEEeeCCCCCccchhhHhhhhhhhhhhhccCC-CcccchhcccchhcccCCCCCCCccEEEccC-Cc
Q 002315 102 PTPLSLLPFCRLKVLELRGCDLSTSAAKGLLELRHTLEKIICHNS-TNALRHVFASRIVEIKDSPQWNRLSFVSCSC-NR 179 (937)
Q Consensus 102 ~iP~sLs~L~~L~~LdLS~N~Ls~~lp~~L~~L~~Ll~LlL~~N~-L~~L~~l~~~~i~~l~~l~~l~~L~~L~Ls~-N~ 179 (937)
.+|. +. ++|++|+|++|.|++..+..|..++++..+.+.+|. +..++...+ ..+++|++|++++ |.
T Consensus 25 ~ip~-~~--~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f---------~~l~~L~~L~l~~~n~ 92 (239)
T 2xwt_C 25 RIPS-LP--PSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSF---------YNLSKVTHIEIRNTRN 92 (239)
T ss_dssp SCCC-CC--TTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTE---------ESCTTCCEEEEEEETT
T ss_pred ccCC-CC--CcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHc---------CCCcCCcEEECCCCCC
Confidence 3455 43 489999999999999777789999999999999996 777765332 2567999999998 99
Q ss_pred Cccchh-hcCCCCCCcEEECCCCCCCCCcCcCCCCCCC---EEECCCC-CCCCcccc-cccccccc-eecccCccccccc
Q 002315 180 LVIMDE-SLQLLPAVETLDLSRNKFAKVDNLRKCVNLK---HLDLGFN-NLRSIAAF-SEVSCHIV-KLVLRNNALTTLR 252 (937)
Q Consensus 180 Ls~LP~-sL~~L~~L~~LdLs~N~L~~l~~L~~L~~L~---~LdLS~N-~Lt~L~~l-~~~l~sL~-~L~Ls~N~Lt~Lp 252 (937)
|+.+|. .|..+++|++|++++|.++.++.+..+++|+ .|+|++| .++.++.. +..+++|+ .|+|++|+|+.++
T Consensus 93 l~~i~~~~f~~l~~L~~L~l~~n~l~~lp~~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~ 172 (239)
T 2xwt_C 93 LTYIDPDALKELPLLKFLGIFNTGLKMFPDLTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQ 172 (239)
T ss_dssp CCEECTTSEECCTTCCEEEEEEECCCSCCCCTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEEC
T ss_pred eeEcCHHHhCCCCCCCEEeCCCCCCccccccccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcccC
Confidence 998875 7889999999999999999998888899998 9999999 99988763 55678999 9999999999886
Q ss_pred -cCCCCCCCCEEEccCCC-CCCCchhhhhcCC-CCCCEEEecCCCCCCCcchhhhHhhhcCCCceeccCCcc
Q 002315 253 -GIENLKSLEGLDISYNI-ISTFSELEFLASL-PYLLNLWLEGNPLCCSRWYRAQVFSYFAHPAKLKVDGKE 321 (937)
Q Consensus 253 -~L~~L~sL~~LdLS~N~-Ls~l~~l~~L~~L-~sL~~L~Ls~NpLt~~~~~r~~~~~~l~~L~~L~LdgN~ 321 (937)
.....++|+.|+|++|+ ++.++. ..+..+ ++|+.|+|++|+++..+.. .++.++.|.+.++.
T Consensus 173 ~~~~~~~~L~~L~L~~n~~l~~i~~-~~~~~l~~~L~~L~l~~N~l~~l~~~------~~~~L~~L~l~~~~ 237 (239)
T 2xwt_C 173 GYAFNGTKLDAVYLNKNKYLTVIDK-DAFGGVYSGPSLLDVSQTSVTALPSK------GLEHLKELIARNTW 237 (239)
T ss_dssp TTTTTTCEEEEEECTTCTTCCEECT-TTTTTCSBCCSEEECTTCCCCCCCCT------TCTTCSEEECTTC-
T ss_pred HhhcCCCCCCEEEcCCCCCcccCCH-HHhhccccCCcEEECCCCccccCChh------HhccCceeeccCcc
Confidence 33333899999999995 998864 667888 9999999999999866532 46788888887753
No 86
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.73 E-value=9.6e-19 Score=198.69 Aligned_cols=257 Identities=16% Similarity=0.074 Sum_probs=170.0
Q ss_pred ccccCCCCCcchHHHHH-----hcCCCCCcEEEccCCCCCCCC----CCCCCCCCCCcEEEeeCCCCCccchhhHhh---
Q 002315 66 YVSDLGDHRALEQLRRI-----LKLLTSLKVVSALPPPARDPT----PLSLLPFCRLKVLELRGCDLSTSAAKGLLE--- 133 (937)
Q Consensus 66 ~vLdLs~n~~le~Lp~~-----L~~L~~Lk~LdLs~N~Is~~i----P~sLs~L~~L~~LdLS~N~Ls~~lp~~L~~--- 133 (937)
..+++++|......+.. ...+++|+.|+|++|.++... +..+..+++|++|+|++|.++...+..+..
T Consensus 116 ~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~ 195 (461)
T 1z7x_W 116 QELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLK 195 (461)
T ss_dssp CEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHH
T ss_pred eEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHh
Confidence 35677777654332322 233668999999998887643 455667789999999999887655554443
Q ss_pred --hhhhhhhhhccCCCcccchh-cccchhcccCCCCCCCccEEEccCCcCccc-----hh-hcCCCCCCcEEECCCCCCC
Q 002315 134 --LRHTLEKIICHNSTNALRHV-FASRIVEIKDSPQWNRLSFVSCSCNRLVIM-----DE-SLQLLPAVETLDLSRNKFA 204 (937)
Q Consensus 134 --L~~Ll~LlL~~N~L~~L~~l-~~~~i~~l~~l~~l~~L~~L~Ls~N~Ls~L-----P~-sL~~L~~L~~LdLs~N~L~ 204 (937)
++++..+.+.+|.+...... ++..+ ..+++|+.|++++|.++.. +. .+..+++|++|+|++|.++
T Consensus 196 ~~~~~L~~L~L~~n~l~~~~~~~l~~~l------~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~ 269 (461)
T 1z7x_W 196 DSPCQLEALKLESCGVTSDNCRDLCGIV------ASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGIT 269 (461)
T ss_dssp HSCCCCCEEECTTSCCBTTHHHHHHHHH------HHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCC
T ss_pred cCCCCceEEEccCCCCcHHHHHHHHHHH------HhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCC
Confidence 34777888888876542211 11111 2456888899998888732 22 3346788899999988888
Q ss_pred C-----Cc-CcCCCCCCCEEECCCCCCCCccc--c----cccccccceecccCcccccc-----c-cCCCCCCCCEEEcc
Q 002315 205 K-----VD-NLRKCVNLKHLDLGFNNLRSIAA--F----SEVSCHIVKLVLRNNALTTL-----R-GIENLKSLEGLDIS 266 (937)
Q Consensus 205 ~-----l~-~L~~L~~L~~LdLS~N~Lt~L~~--l----~~~l~sL~~L~Ls~N~Lt~L-----p-~L~~L~sL~~LdLS 266 (937)
. ++ .+..+++|++|+|++|.++.... + ....++|+.|+|++|.++.. + .+..+++|+.|+|+
T Consensus 270 ~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls 349 (461)
T 1z7x_W 270 AKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQIS 349 (461)
T ss_dssp HHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECC
T ss_pred HHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEcc
Confidence 6 22 46667888899999888764321 1 11225888899998888763 2 45667888899999
Q ss_pred CCCCCCCchh---hhhcC-CCCCCEEEecCCCCCCCc-chhhhHhhhcCCCceeccCCccCChhhHH
Q 002315 267 YNIISTFSEL---EFLAS-LPYLLNLWLEGNPLCCSR-WYRAQVFSYFAHPAKLKVDGKEISTRELW 328 (937)
Q Consensus 267 ~N~Ls~l~~l---~~L~~-L~sL~~L~Ls~NpLt~~~-~~r~~~~~~l~~L~~L~LdgN~Is~~e~~ 328 (937)
+|.|.+.... ..+.. .++|+.|+|++|.++... ......+..++.|+.++|++|+++.....
T Consensus 350 ~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N~i~~~~~~ 416 (461)
T 1z7x_W 350 NNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGIL 416 (461)
T ss_dssp SSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCCHHHHH
T ss_pred CCccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCccEEECCCCCCCHHHHH
Confidence 8888764321 11222 678889999988886321 01234456678888889999988876543
No 87
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.72 E-value=1.4e-17 Score=198.94 Aligned_cols=176 Identities=22% Similarity=0.232 Sum_probs=138.9
Q ss_pred hcCCCCCcEEEccCCCCCCCCCCCCCCCCCCcEEEeeCCCCCccchhhHhhhhhhhhhhhccCCCcccchhcccchhccc
Q 002315 83 LKLLTSLKVVSALPPPARDPTPLSLLPFCRLKVLELRGCDLSTSAAKGLLELRHTLEKIICHNSTNALRHVFASRIVEIK 162 (937)
Q Consensus 83 L~~L~~Lk~LdLs~N~Is~~iP~sLs~L~~L~~LdLS~N~Ls~~lp~~L~~L~~Ll~LlL~~N~L~~L~~l~~~~i~~l~ 162 (937)
+..|++|+.|+|++|.|... ..|..+++|+.|+|++|.|++..| +..
T Consensus 39 ~~~L~~L~~L~l~~n~i~~l--~~l~~l~~L~~L~Ls~N~l~~~~~--l~~----------------------------- 85 (605)
T 1m9s_A 39 QNELNSIDQIIANNSDIKSV--QGIQYLPNVTKLFLNGNKLTDIKP--LTN----------------------------- 85 (605)
T ss_dssp HHHHTTCCCCBCTTCCCCCC--TTGGGCTTCCEEECTTSCCCCCGG--GGG-----------------------------
T ss_pred hhcCCCCCEEECcCCCCCCC--hHHccCCCCCEEEeeCCCCCCChh--hcc-----------------------------
Confidence 35678899999999998765 358899999999999999987433 322
Q ss_pred CCCCCCCccEEEccCCcCccchhhcCCCCCCcEEECCCCCCCCCcCcCCCCCCCEEECCCCCCCCcccccccccccceec
Q 002315 163 DSPQWNRLSFVSCSCNRLVIMDESLQLLPAVETLDLSRNKFAKVDNLRKCVNLKHLDLGFNNLRSIAAFSEVSCHIVKLV 242 (937)
Q Consensus 163 ~l~~l~~L~~L~Ls~N~Ls~LP~sL~~L~~L~~LdLs~N~L~~l~~L~~L~~L~~LdLS~N~Lt~L~~l~~~l~sL~~L~ 242 (937)
+++|+.|+|++|.|..+| .+..+++|+.|+|++|.|..++.+..+++|+.|+|++|.|+.++ .+..+++|+.|+
T Consensus 86 ----l~~L~~L~Ls~N~l~~l~-~l~~l~~L~~L~Ls~N~l~~l~~l~~l~~L~~L~Ls~N~l~~l~-~l~~l~~L~~L~ 159 (605)
T 1m9s_A 86 ----LKNLGWLFLDENKIKDLS-SLKDLKKLKSLSLEHNGISDINGLVHLPQLESLYLGNNKITDIT-VLSRLTKLDTLS 159 (605)
T ss_dssp ----CTTCCEEECCSSCCCCCT-TSTTCTTCCEEECTTSCCCCCGGGGGCTTCSEEECCSSCCCCCG-GGGSCTTCSEEE
T ss_pred ----CCCCCEEECcCCCCCCCh-hhccCCCCCEEEecCCCCCCCccccCCCccCEEECCCCccCCch-hhcccCCCCEEE
Confidence 346788888888888775 67788888888888888888877888888888888888888773 344567888888
Q ss_pred ccCccccccccCCCCCCCCEEEccCCCCCCCchhhhhcCCCCCCEEEecCCCCCCCcc
Q 002315 243 LRNNALTTLRGIENLKSLEGLDISYNIISTFSELEFLASLPYLLNLWLEGNPLCCSRW 300 (937)
Q Consensus 243 Ls~N~Lt~Lp~L~~L~sL~~LdLS~N~Ls~l~~l~~L~~L~sL~~L~Ls~NpLt~~~~ 300 (937)
|++|.|+.++.+..+++|+.|+|++|.|+.++ .+..+++|+.|+|++|++...+.
T Consensus 160 Ls~N~l~~~~~l~~l~~L~~L~Ls~N~i~~l~---~l~~l~~L~~L~L~~N~l~~~p~ 214 (605)
T 1m9s_A 160 LEDNQISDIVPLAGLTKLQNLYLSKNHISDLR---ALAGLKNLDVLELFSQECLNKPI 214 (605)
T ss_dssp CCSSCCCCCGGGTTCTTCCEEECCSSCCCBCG---GGTTCTTCSEEECCSEEEECCCC
T ss_pred CcCCcCCCchhhccCCCCCEEECcCCCCCCCh---HHccCCCCCEEEccCCcCcCCcc
Confidence 88888888766888888888888888888764 36778888888888888876653
No 88
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.71 E-value=5.5e-17 Score=171.14 Aligned_cols=170 Identities=18% Similarity=0.199 Sum_probs=141.2
Q ss_pred ccCCCCCcchHHHHHhcCCCCCcEEEccCCCCCCCCCCCCCCCCCCcEEEeeCCCCCccchhhHhhhhhhhhhhhccCCC
Q 002315 68 SDLGDHRALEQLRRILKLLTSLKVVSALPPPARDPTPLSLLPFCRLKVLELRGCDLSTSAAKGLLELRHTLEKIICHNST 147 (937)
Q Consensus 68 LdLs~n~~le~Lp~~L~~L~~Lk~LdLs~N~Is~~iP~sLs~L~~L~~LdLS~N~Ls~~lp~~L~~L~~Ll~LlL~~N~L 147 (937)
++++++. +..+|..+. ++|+.|+|++|.+.+..+..|..+++|++|+|++|.|++..+..|.
T Consensus 19 l~~~~~~-l~~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~--------------- 80 (251)
T 3m19_A 19 VDCQGKS-LDSVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFD--------------- 80 (251)
T ss_dssp EECTTCC-CSSCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTT---------------
T ss_pred EecCCCC-ccccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhc---------------
Confidence 4444433 444554433 6899999999999999888999999999999999999875554333
Q ss_pred cccchhcccchhcccCCCCCCCccEEEccCCcCccchh-hcCCCCCCcEEECCCCCCCCCc--CcCCCCCCCEEECCCCC
Q 002315 148 NALRHVFASRIVEIKDSPQWNRLSFVSCSCNRLVIMDE-SLQLLPAVETLDLSRNKFAKVD--NLRKCVNLKHLDLGFNN 224 (937)
Q Consensus 148 ~~L~~l~~~~i~~l~~l~~l~~L~~L~Ls~N~Ls~LP~-sL~~L~~L~~LdLs~N~L~~l~--~L~~L~~L~~LdLS~N~ 224 (937)
.+++|++|++++|.|+.+|. .|..+++|++|+|++|.|+.++ .|..+++|+.|+|++|.
T Consensus 81 ------------------~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~ 142 (251)
T 3m19_A 81 ------------------DLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQ 142 (251)
T ss_dssp ------------------TCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred ------------------cCCcCCEEECCCCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCc
Confidence 34578999999999997765 6788999999999999999876 37889999999999999
Q ss_pred CCCccc-ccccccccceecccCccccccc--cCCCCCCCCEEEccCCCCCCC
Q 002315 225 LRSIAA-FSEVSCHIVKLVLRNNALTTLR--GIENLKSLEGLDISYNIISTF 273 (937)
Q Consensus 225 Lt~L~~-l~~~l~sL~~L~Ls~N~Lt~Lp--~L~~L~sL~~LdLS~N~Ls~l 273 (937)
|+.+++ .+..+++|+.|+|++|+|+.++ .+..+++|+.|+|++|.+...
T Consensus 143 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~ 194 (251)
T 3m19_A 143 LQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDCS 194 (251)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCTT
T ss_pred CCccCHHHcCcCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCceeCC
Confidence 999887 4556789999999999999975 688999999999999999764
No 89
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.71 E-value=7.1e-17 Score=172.53 Aligned_cols=197 Identities=20% Similarity=0.239 Sum_probs=162.1
Q ss_pred CCcEEEccCCCCCCCCCCCCCCCCCCcEEEeeCCCCCccchhhHhhhhhhhhhhhccCCCcccchhcccchhcccCCCCC
Q 002315 88 SLKVVSALPPPARDPTPLSLLPFCRLKVLELRGCDLSTSAAKGLLELRHTLEKIICHNSTNALRHVFASRIVEIKDSPQW 167 (937)
Q Consensus 88 ~Lk~LdLs~N~Is~~iP~sLs~L~~L~~LdLS~N~Ls~~lp~~L~~L~~Ll~LlL~~N~L~~L~~l~~~~i~~l~~l~~l 167 (937)
++..+++..+.+... ..+..+++|+.|++++|.++. ++ .+. .+
T Consensus 20 ~l~~l~l~~~~~~~~--~~~~~l~~L~~L~l~~~~i~~-~~-~l~---------------------------------~l 62 (272)
T 3rfs_A 20 ETIKANLKKKSVTDA--VTQNELNSIDQIIANNSDIKS-VQ-GIQ---------------------------------YL 62 (272)
T ss_dssp HHHHHHHTCSCTTSE--ECHHHHTTCCEEECTTSCCCC-CT-TGG---------------------------------GC
T ss_pred HHHHHHhcCcccccc--cccccccceeeeeeCCCCccc-cc-ccc---------------------------------cC
Confidence 334456666665544 345677889999999888864 11 121 34
Q ss_pred CCccEEEccCCcCccchhhcCCCCCCcEEECCCCCCCCCc--CcCCCCCCCEEECCCCCCCCcccc-cccccccceeccc
Q 002315 168 NRLSFVSCSCNRLVIMDESLQLLPAVETLDLSRNKFAKVD--NLRKCVNLKHLDLGFNNLRSIAAF-SEVSCHIVKLVLR 244 (937)
Q Consensus 168 ~~L~~L~Ls~N~Ls~LP~sL~~L~~L~~LdLs~N~L~~l~--~L~~L~~L~~LdLS~N~Lt~L~~l-~~~l~sL~~L~Ls 244 (937)
++|++|++++|.+..++ .+..+++|++|+|++|.++.++ .|..+++|++|+|++|.++.+++. +..+++|+.|+|+
T Consensus 63 ~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 141 (272)
T 3rfs_A 63 PNVRYLALGGNKLHDIS-ALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLA 141 (272)
T ss_dssp TTCCEEECTTSCCCCCG-GGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCCcEEECCCCCCCCch-hhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECC
Confidence 58999999999999875 7889999999999999999876 488999999999999999998764 4567999999999
Q ss_pred Cccccccc--cCCCCCCCCEEEccCCCCCCCchhhhhcCCCCCCEEEecCCCCCCCcchhhhHhhhcCCCceeccCCccC
Q 002315 245 NNALTTLR--GIENLKSLEGLDISYNIISTFSELEFLASLPYLLNLWLEGNPLCCSRWYRAQVFSYFAHPAKLKVDGKEI 322 (937)
Q Consensus 245 ~N~Lt~Lp--~L~~L~sL~~LdLS~N~Ls~l~~l~~L~~L~sL~~L~Ls~NpLt~~~~~r~~~~~~l~~L~~L~LdgN~I 322 (937)
+|.|+.++ .+..+++|+.|+|++|.|+.+++ ..+..+++|+.|+|++|++...+ ...+..++.|+.++|.+|++
T Consensus 142 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~L~~N~l~~~~---~~~~~~l~~L~~L~l~~N~~ 217 (272)
T 3rfs_A 142 HNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPE-GVFDKLTQLKDLRLYQNQLKSVP---DGVFDRLTSLQYIWLHDNPW 217 (272)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCT-TTTTTCTTCCEEECCSSCCSCCC---TTTTTTCTTCCEEECCSSCB
T ss_pred CCccCccCHHHhccCccCCEEECCCCCcCccCH-HHhcCCccCCEEECCCCcCCccC---HHHHhCCcCCCEEEccCCCc
Confidence 99999986 47899999999999999999875 56789999999999999998654 34567889999999999999
Q ss_pred Chhh
Q 002315 323 STRE 326 (937)
Q Consensus 323 s~~e 326 (937)
.+..
T Consensus 218 ~~~~ 221 (272)
T 3rfs_A 218 DCTC 221 (272)
T ss_dssp CCCT
T ss_pred cccC
Confidence 8654
No 90
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.71 E-value=5e-17 Score=192.87 Aligned_cols=181 Identities=19% Similarity=0.244 Sum_probs=112.8
Q ss_pred CCCcEEEccCCCCCCCCCCCCCCCCCCcEEEeeCCCCCccchhhHhhhhhhhhhhhccCCCcccchhcccchhcccCCCC
Q 002315 87 TSLKVVSALPPPARDPTPLSLLPFCRLKVLELRGCDLSTSAAKGLLELRHTLEKIICHNSTNALRHVFASRIVEIKDSPQ 166 (937)
Q Consensus 87 ~~Lk~LdLs~N~Is~~iP~sLs~L~~L~~LdLS~N~Ls~~lp~~L~~L~~Ll~LlL~~N~L~~L~~l~~~~i~~l~~l~~ 166 (937)
.+|+.|+|++|.+++ +|..+ +++|++|+|++|.|+. +| ..++
T Consensus 59 ~~L~~L~Ls~n~L~~-lp~~l--~~~L~~L~Ls~N~l~~-ip---~~l~------------------------------- 100 (571)
T 3cvr_A 59 NQFSELQLNRLNLSS-LPDNL--PPQITVLEITQNALIS-LP---ELPA------------------------------- 100 (571)
T ss_dssp TTCSEEECCSSCCSC-CCSCC--CTTCSEEECCSSCCSC-CC---CCCT-------------------------------
T ss_pred CCccEEEeCCCCCCc-cCHhH--cCCCCEEECcCCCCcc-cc---cccC-------------------------------
Confidence 489999999999987 57666 3899999999999984 44 2223
Q ss_pred CCCccEEEccCCcCccchhhcCCCCCCcEEECCCCCCCCCcCcCCCCCCCEEECCCCCCCCcccccccccccceecccCc
Q 002315 167 WNRLSFVSCSCNRLVIMDESLQLLPAVETLDLSRNKFAKVDNLRKCVNLKHLDLGFNNLRSIAAFSEVSCHIVKLVLRNN 246 (937)
Q Consensus 167 l~~L~~L~Ls~N~Ls~LP~sL~~L~~L~~LdLs~N~L~~l~~L~~L~~L~~LdLS~N~Lt~L~~l~~~l~sL~~L~Ls~N 246 (937)
+|++|++++|.|+.+|. +.. +|+.|+|++|.|+.++. .+++|+.|+|++|.|+.++. .+++|+.|+|++|
T Consensus 101 --~L~~L~Ls~N~l~~ip~-l~~--~L~~L~Ls~N~l~~lp~--~l~~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~N 170 (571)
T 3cvr_A 101 --SLEYLDACDNRLSTLPE-LPA--SLKHLDVDNNQLTMLPE--LPALLEYINADNNQLTMLPE---LPTSLEVLSVRNN 170 (571)
T ss_dssp --TCCEEECCSSCCSCCCC-CCT--TCCEEECCSSCCSCCCC--CCTTCCEEECCSSCCSCCCC---CCTTCCEEECCSS
T ss_pred --CCCEEEccCCCCCCcch-hhc--CCCEEECCCCcCCCCCC--cCccccEEeCCCCccCcCCC---cCCCcCEEECCCC
Confidence 45666666666666655 433 66666666666666555 45666666666666666554 3456666666666
Q ss_pred cccccccCCCCCCCCEEEccCCCCCCCchhhhhcCCCCC-------CEEEecCCCCCCCcchhhhHhhhcCCCceeccCC
Q 002315 247 ALTTLRGIENLKSLEGLDISYNIISTFSELEFLASLPYL-------LNLWLEGNPLCCSRWYRAQVFSYFAHPAKLKVDG 319 (937)
Q Consensus 247 ~Lt~Lp~L~~L~sL~~LdLS~N~Ls~l~~l~~L~~L~sL-------~~L~Ls~NpLt~~~~~r~~~~~~l~~L~~L~Ldg 319 (937)
.|+.+|.+. ++|+.|+|++|.|+.+|. +.. +| +.|+|++|.|+..+ ..+..++.|+.|+|++
T Consensus 171 ~L~~lp~l~--~~L~~L~Ls~N~L~~lp~---~~~--~L~~~~~~L~~L~Ls~N~l~~lp----~~l~~l~~L~~L~L~~ 239 (571)
T 3cvr_A 171 QLTFLPELP--ESLEALDVSTNLLESLPA---VPV--RNHHSEETEIFFRCRENRITHIP----ENILSLDPTCTIILED 239 (571)
T ss_dssp CCSCCCCCC--TTCCEEECCSSCCSSCCC---CC----------CCEEEECCSSCCCCCC----GGGGGSCTTEEEECCS
T ss_pred CCCCcchhh--CCCCEEECcCCCCCchhh---HHH--hhhcccccceEEecCCCcceecC----HHHhcCCCCCEEEeeC
Confidence 666665533 566666666666665553 222 44 66666666665443 1222356666666666
Q ss_pred ccCChhh
Q 002315 320 KEISTRE 326 (937)
Q Consensus 320 N~Is~~e 326 (937)
|+++...
T Consensus 240 N~l~~~~ 246 (571)
T 3cvr_A 240 NPLSSRI 246 (571)
T ss_dssp SSCCHHH
T ss_pred CcCCCcC
Confidence 6666543
No 91
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.70 E-value=1.1e-17 Score=186.16 Aligned_cols=226 Identities=18% Similarity=0.147 Sum_probs=173.0
Q ss_pred ccCCCCCcchHHH----HHhcCCC-CCcEEEccCCCCCCCCCCCCCCC-----CCCcEEEeeCCCCCccchhhHhhh---
Q 002315 68 SDLGDHRALEQLR----RILKLLT-SLKVVSALPPPARDPTPLSLLPF-----CRLKVLELRGCDLSTSAAKGLLEL--- 134 (937)
Q Consensus 68 LdLs~n~~le~Lp----~~L~~L~-~Lk~LdLs~N~Is~~iP~sLs~L-----~~L~~LdLS~N~Ls~~lp~~L~~L--- 134 (937)
+|+++|.....-+ ..+..++ +|+.|+|++|.+++..+..|..+ ++|++|+|++|.+++..+..+...
T Consensus 27 L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~ 106 (362)
T 3goz_A 27 LDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELVKTLAA 106 (362)
T ss_dssp EECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHHT
T ss_pred EEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHHHHHHHHHh
Confidence 5566665433333 7788898 89999999999988877777765 999999999999988777766654
Q ss_pred --hhhhhhhhccCCCcccchhcccchhcccCCCC-CCCccEEEccCCcCc-----cchhhcCCCC-CCcEEECCCCCCCC
Q 002315 135 --RHTLEKIICHNSTNALRHVFASRIVEIKDSPQ-WNRLSFVSCSCNRLV-----IMDESLQLLP-AVETLDLSRNKFAK 205 (937)
Q Consensus 135 --~~Ll~LlL~~N~L~~L~~l~~~~i~~l~~l~~-l~~L~~L~Ls~N~Ls-----~LP~sL~~L~-~L~~LdLs~N~L~~ 205 (937)
+++.++.+.+|.+........... +.. .++|++|+|++|.|+ .++..+..++ +|++|+|++|.|+.
T Consensus 107 ~~~~L~~L~Ls~N~l~~~~~~~l~~~-----l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~ 181 (362)
T 3goz_A 107 IPFTITVLDLGWNDFSSKSSSEFKQA-----FSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLAS 181 (362)
T ss_dssp SCTTCCEEECCSSCGGGSCHHHHHHH-----HTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGG
T ss_pred CCCCccEEECcCCcCCcHHHHHHHHH-----HHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCCCch
Confidence 788899999998765543221110 112 258999999999998 5566677776 99999999999987
Q ss_pred Cc------CcCCC-CCCCEEECCCCCCCC-----ccccccc-ccccceecccCccccccc------cCCCCCCCCEEEcc
Q 002315 206 VD------NLRKC-VNLKHLDLGFNNLRS-----IAAFSEV-SCHIVKLVLRNNALTTLR------GIENLKSLEGLDIS 266 (937)
Q Consensus 206 l~------~L~~L-~~L~~LdLS~N~Lt~-----L~~l~~~-l~sL~~L~Ls~N~Lt~Lp------~L~~L~sL~~LdLS 266 (937)
.. .+..+ ++|+.|+|++|.|+. ++..... .++|+.|+|++|.|+..+ .+..+++|+.|+|+
T Consensus 182 ~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~ 261 (362)
T 3goz_A 182 KNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLD 261 (362)
T ss_dssp SCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEE
T ss_pred hhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEec
Confidence 53 34555 599999999999987 4433333 358999999999998852 46788999999999
Q ss_pred CCCCCCCchh------hhhcCCCCCCEEEecCCCCCCC
Q 002315 267 YNIISTFSEL------EFLASLPYLLNLWLEGNPLCCS 298 (937)
Q Consensus 267 ~N~Ls~l~~l------~~L~~L~sL~~L~Ls~NpLt~~ 298 (937)
+|.+..+... ..+..+++|+.|+|++|++...
T Consensus 262 ~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~~ 299 (362)
T 3goz_A 262 YDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPS 299 (362)
T ss_dssp HHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCGG
T ss_pred cCCccccCHHHHHHHHHHhccCCceEEEecCCCcCCCc
Confidence 9997765531 2456788899999999999755
No 92
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.69 E-value=6.8e-17 Score=175.07 Aligned_cols=185 Identities=22% Similarity=0.245 Sum_probs=157.1
Q ss_pred EccCCCCCCCCCCCCCCCCCCcEEEeeCCCCCccchhhHhhhhhhhhhhhccCCCcccchhcccchhcccCCCCCCCccE
Q 002315 93 SALPPPARDPTPLSLLPFCRLKVLELRGCDLSTSAAKGLLELRHTLEKIICHNSTNALRHVFASRIVEIKDSPQWNRLSF 172 (937)
Q Consensus 93 dLs~N~Is~~iP~sLs~L~~L~~LdLS~N~Ls~~lp~~L~~L~~Ll~LlL~~N~L~~L~~l~~~~i~~l~~l~~l~~L~~ 172 (937)
.+..+.+.+. ..+..+++|+.|++++|.+... + .+. .+++|+.
T Consensus 30 ~l~~~~~~~~--~~~~~l~~L~~L~l~~~~i~~~-~-~~~---------------------------------~l~~L~~ 72 (291)
T 1h6t_A 30 NLKKKSVTDA--VTQNELNSIDQIIANNSDIKSV-Q-GIQ---------------------------------YLPNVTK 72 (291)
T ss_dssp HTTCSCTTSE--ECHHHHHTCCEEECTTSCCCCC-T-TGG---------------------------------GCTTCCE
T ss_pred HhcCCCcccc--cchhhcCcccEEEccCCCcccC-h-hHh---------------------------------cCCCCCE
Confidence 4555555543 2345678899999999988752 2 121 3458999
Q ss_pred EEccCCcCccchhhcCCCCCCcEEECCCCCCCCCcCcCCCCCCCEEECCCCCCCCcccccccccccceecccCccccccc
Q 002315 173 VSCSCNRLVIMDESLQLLPAVETLDLSRNKFAKVDNLRKCVNLKHLDLGFNNLRSIAAFSEVSCHIVKLVLRNNALTTLR 252 (937)
Q Consensus 173 L~Ls~N~Ls~LP~sL~~L~~L~~LdLs~N~L~~l~~L~~L~~L~~LdLS~N~Lt~L~~l~~~l~sL~~L~Ls~N~Lt~Lp 252 (937)
|++++|.++.++. +..+++|++|+|++|.++.++.+..+++|++|+|++|.|+.++. ...+++|+.|+|++|.|+.++
T Consensus 73 L~L~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~L~~n~i~~~~~-l~~l~~L~~L~l~~n~l~~~~ 150 (291)
T 1h6t_A 73 LFLNGNKLTDIKP-LANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLEHNGISDING-LVHLPQLESLYLGNNKITDIT 150 (291)
T ss_dssp EECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCGGGGTTCTTCCEEECTTSCCCCCGG-GGGCTTCCEEECCSSCCCCCG
T ss_pred EEccCCccCCCcc-cccCCCCCEEECCCCcCCCChhhccCCCCCEEECCCCcCCCChh-hcCCCCCCEEEccCCcCCcch
Confidence 9999999998877 99999999999999999999999999999999999999999864 445689999999999999999
Q ss_pred cCCCCCCCCEEEccCCCCCCCchhhhhcCCCCCCEEEecCCCCCCCcchhhhHhhhcCCCceeccCCccCCh
Q 002315 253 GIENLKSLEGLDISYNIISTFSELEFLASLPYLLNLWLEGNPLCCSRWYRAQVFSYFAHPAKLKVDGKEIST 324 (937)
Q Consensus 253 ~L~~L~sL~~LdLS~N~Ls~l~~l~~L~~L~sL~~L~Ls~NpLt~~~~~r~~~~~~l~~L~~L~LdgN~Is~ 324 (937)
.+..+++|+.|+|++|.|+.+++ +..+++|+.|+|++|.++..+ .+..++.|+.|+|.+|+++.
T Consensus 151 ~l~~l~~L~~L~L~~N~l~~~~~---l~~l~~L~~L~L~~N~i~~l~-----~l~~l~~L~~L~l~~n~i~~ 214 (291)
T 1h6t_A 151 VLSRLTKLDTLSLEDNQISDIVP---LAGLTKLQNLYLSKNHISDLR-----ALAGLKNLDVLELFSQECLN 214 (291)
T ss_dssp GGGGCTTCSEEECCSSCCCCCGG---GTTCTTCCEEECCSSCCCBCG-----GGTTCTTCSEEEEEEEEEEC
T ss_pred hhccCCCCCEEEccCCccccchh---hcCCCccCEEECCCCcCCCCh-----hhccCCCCCEEECcCCcccC
Confidence 99999999999999999999874 889999999999999998653 26678999999999999874
No 93
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.69 E-value=1e-17 Score=179.01 Aligned_cols=171 Identities=21% Similarity=0.203 Sum_probs=118.2
Q ss_pred CCCCcEEEccCCCCCCCCCCCCCCCCCCcEEEeeCCCCCccchhhHhhhhhhhhhhhccCCCcccchhcccchhcccCCC
Q 002315 86 LTSLKVVSALPPPARDPTPLSLLPFCRLKVLELRGCDLSTSAAKGLLELRHTLEKIICHNSTNALRHVFASRIVEIKDSP 165 (937)
Q Consensus 86 L~~Lk~LdLs~N~Is~~iP~sLs~L~~L~~LdLS~N~Ls~~lp~~L~~L~~Ll~LlL~~N~L~~L~~l~~~~i~~l~~l~ 165 (937)
+.+|..+++..|.+++.. .+..+++|+.|++++|.|+. ++ .+.
T Consensus 18 l~~l~~l~l~~~~i~~~~--~~~~l~~L~~L~l~~n~i~~-l~-~l~--------------------------------- 60 (263)
T 1xeu_A 18 LANAVKQNLGKQSVTDLV--SQKELSGVQNFNGDNSNIQS-LA-GMQ--------------------------------- 60 (263)
T ss_dssp HHHHHHHHHTCSCTTSEE--CHHHHTTCSEEECTTSCCCC-CT-TGG---------------------------------
T ss_pred HHHHHHHHhcCCCccccc--chhhcCcCcEEECcCCCccc-ch-HHh---------------------------------
Confidence 334445556666665442 45566677777777776654 22 121
Q ss_pred CCCCccEEEccCCcCccchhhcCCCCCCcEEECCCCCCCCCcCcCCCCCCCEEECCCCCCCCcccccccccccceecccC
Q 002315 166 QWNRLSFVSCSCNRLVIMDESLQLLPAVETLDLSRNKFAKVDNLRKCVNLKHLDLGFNNLRSIAAFSEVSCHIVKLVLRN 245 (937)
Q Consensus 166 ~l~~L~~L~Ls~N~Ls~LP~sL~~L~~L~~LdLs~N~L~~l~~L~~L~~L~~LdLS~N~Lt~L~~l~~~l~sL~~L~Ls~ 245 (937)
.+++|+.|++++|.|+.+|. +..+++|+.|+|++|+++.++.+.. ++|+.|+|++|.|+.++. ...+++|+.|+|++
T Consensus 61 ~l~~L~~L~L~~N~i~~~~~-l~~l~~L~~L~L~~N~l~~l~~~~~-~~L~~L~L~~N~l~~~~~-l~~l~~L~~L~Ls~ 137 (263)
T 1xeu_A 61 FFTNLKELHLSHNQISDLSP-LKDLTKLEELSVNRNRLKNLNGIPS-ACLSRLFLDNNELRDTDS-LIHLKNLEILSIRN 137 (263)
T ss_dssp GCTTCCEEECCSSCCCCCGG-GTTCSSCCEEECCSSCCSCCTTCCC-SSCCEEECCSSCCSBSGG-GTTCTTCCEEECTT
T ss_pred hCCCCCEEECCCCccCCChh-hccCCCCCEEECCCCccCCcCcccc-CcccEEEccCCccCCChh-hcCcccccEEECCC
Confidence 23467777777777776665 7777777777777777777765555 777888888887777654 34457788888888
Q ss_pred ccccccccCCCCCCCCEEEccCCCCCCCchhhhhcCCCCCCEEEecCCCCCCCc
Q 002315 246 NALTTLRGIENLKSLEGLDISYNIISTFSELEFLASLPYLLNLWLEGNPLCCSR 299 (937)
Q Consensus 246 N~Lt~Lp~L~~L~sL~~LdLS~N~Ls~l~~l~~L~~L~sL~~L~Ls~NpLt~~~ 299 (937)
|+|+.++.+..+++|+.|+|++|.|+.+ ..+..+++|+.|+|++|++++.+
T Consensus 138 N~i~~~~~l~~l~~L~~L~L~~N~i~~~---~~l~~l~~L~~L~l~~N~~~~~~ 188 (263)
T 1xeu_A 138 NKLKSIVMLGFLSKLEVLDLHGNEITNT---GGLTRLKKVNWIDLTGQKCVNEP 188 (263)
T ss_dssp SCCCBCGGGGGCTTCCEEECTTSCCCBC---TTSTTCCCCCEEEEEEEEEECCC
T ss_pred CcCCCChHHccCCCCCEEECCCCcCcch---HHhccCCCCCEEeCCCCcccCCc
Confidence 8887777777788888888888888876 34677888888888888887664
No 94
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.69 E-value=2.2e-19 Score=212.94 Aligned_cols=198 Identities=20% Similarity=0.196 Sum_probs=147.8
Q ss_pred CCCCCCcEEEeeCCCCCccchhhHhhhhhhhhhhhccCC-Ccccc---------hhcccchhcccCCCCCCCccEEE---
Q 002315 108 LPFCRLKVLELRGCDLSTSAAKGLLELRHTLEKIICHNS-TNALR---------HVFASRIVEIKDSPQWNRLSFVS--- 174 (937)
Q Consensus 108 s~L~~L~~LdLS~N~Ls~~lp~~L~~L~~Ll~LlL~~N~-L~~L~---------~l~~~~i~~l~~l~~l~~L~~L~--- 174 (937)
..+++|+.|+|++|.|+ .+|..++.+++|.++.+.+|. +..++ +..+..+ ..+++|+.|+
T Consensus 346 ~~~~~L~~L~Ls~n~L~-~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l------~~l~~L~~L~~l~ 418 (567)
T 1dce_A 346 ATDEQLFRCELSVEKST-VLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETL------QYFSTLKAVDPMR 418 (567)
T ss_dssp STTTTSSSCCCCHHHHH-HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHH------HHHHHHHHHCGGG
T ss_pred ccCccceeccCChhhHH-hhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHH------HHHHhcccCcchh
Confidence 45667777777777775 467777777777666654431 00000 0011111 1222344444
Q ss_pred -----------ccCCcCccchhhcCCCCCCcEEECCCCCCCCCcCcCCCCCCCEEECCCCCCCCcccccccccccceecc
Q 002315 175 -----------CSCNRLVIMDESLQLLPAVETLDLSRNKFAKVDNLRKCVNLKHLDLGFNNLRSIAAFSEVSCHIVKLVL 243 (937)
Q Consensus 175 -----------Ls~N~Ls~LP~sL~~L~~L~~LdLs~N~L~~l~~L~~L~~L~~LdLS~N~Lt~L~~l~~~l~sL~~L~L 243 (937)
+.+|.|..+|. ..|+.|+|++|.|+.+|.|..+++|+.|+|++|.|+.+|..+..+++|+.|+|
T Consensus 419 ~n~~~~L~~l~l~~n~i~~l~~-----~~L~~L~Ls~n~l~~lp~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L 493 (567)
T 1dce_A 419 AAYLDDLRSKFLLENSVLKMEY-----ADVRVLHLAHKDLTVLCHLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQA 493 (567)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH-----TTCSEEECTTSCCSSCCCGGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEEC
T ss_pred hcccchhhhhhhhcccccccCc-----cCceEEEecCCCCCCCcCccccccCcEeecCcccccccchhhhcCCCCCEEEC
Confidence 44444544433 25899999999999998899999999999999999999887888899999999
Q ss_pred cCccccccccCCCCCCCCEEEccCCCCCCCchhhhhcCCCCCCEEEecCCCCCCCcchhhhHhhhcCCCceecc
Q 002315 244 RNNALTTLRGIENLKSLEGLDISYNIISTFSELEFLASLPYLLNLWLEGNPLCCSRWYRAQVFSYFAHPAKLKV 317 (937)
Q Consensus 244 s~N~Lt~Lp~L~~L~sL~~LdLS~N~Ls~l~~l~~L~~L~sL~~L~Ls~NpLt~~~~~r~~~~~~l~~L~~L~L 317 (937)
++|.|+.+|.+..+++|+.|+|++|.|++++.+..+..+++|+.|+|++|+++..+.+....+..++.|+.|+|
T Consensus 494 s~N~l~~lp~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~l 567 (567)
T 1dce_A 494 SDNALENVDGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSILT 567 (567)
T ss_dssp CSSCCCCCGGGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEEC
T ss_pred CCCCCCCCcccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCccCC
Confidence 99999999999999999999999999999841267899999999999999999887776677777888888754
No 95
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.69 E-value=1.4e-17 Score=181.47 Aligned_cols=238 Identities=16% Similarity=0.152 Sum_probs=163.4
Q ss_pred cccCCCCCcchHHHHHhcCC--CCCcEEEccCCCCCCCCCCCCCCCCCCcEEEeeCCCCCcc-chhhHhhhhhhhhhhhc
Q 002315 67 VSDLGDHRALEQLRRILKLL--TSLKVVSALPPPARDPTPLSLLPFCRLKVLELRGCDLSTS-AAKGLLELRHTLEKIIC 143 (937)
Q Consensus 67 vLdLs~n~~le~Lp~~L~~L--~~Lk~LdLs~N~Is~~iP~sLs~L~~L~~LdLS~N~Ls~~-lp~~L~~L~~Ll~LlL~ 143 (937)
.+|++++... +..+..+ ++|+.|++.+|.+.+..+. +..+++|++|+|++|.+++. ++..+..+++|.++.+.
T Consensus 51 ~l~l~~~~~~---~~~~~~~~~~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~ 126 (336)
T 2ast_B 51 TLDLTGKNLH---PDVTGRLLSQGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLE 126 (336)
T ss_dssp EEECTTCBCC---HHHHHHHHHTTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECT
T ss_pred eeccccccCC---HHHHHhhhhccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCc
Confidence 4566666544 4556666 8999999999999887665 66799999999999999875 77778888888888887
Q ss_pred cCCCcccchhcccchhcccCCCCCCCccEEEccCC-cCc--cchhhcCCCCCCcEEECCCC-CCCC--Cc-CcCCCC-CC
Q 002315 144 HNSTNALRHVFASRIVEIKDSPQWNRLSFVSCSCN-RLV--IMDESLQLLPAVETLDLSRN-KFAK--VD-NLRKCV-NL 215 (937)
Q Consensus 144 ~N~L~~L~~l~~~~i~~l~~l~~l~~L~~L~Ls~N-~Ls--~LP~sL~~L~~L~~LdLs~N-~L~~--l~-~L~~L~-~L 215 (937)
+|.+... .+.. +..+++|++|++++| .++ .++..+..+++|++|+|++| .++. ++ .+..++ +|
T Consensus 127 ~~~l~~~---~~~~------l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L 197 (336)
T 2ast_B 127 GLRLSDP---IVNT------LAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETI 197 (336)
T ss_dssp TCBCCHH---HHHH------HTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTC
T ss_pred CcccCHH---HHHH------HhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCC
Confidence 7754321 1111 124668888888888 676 36666777888888888888 7775 22 466677 88
Q ss_pred CEEECCCCC--CC--CcccccccccccceecccCcc-ccc--cccCCCCCCCCEEEccCCC-CCCCchhhhhcCCCCCCE
Q 002315 216 KHLDLGFNN--LR--SIAAFSEVSCHIVKLVLRNNA-LTT--LRGIENLKSLEGLDISYNI-ISTFSELEFLASLPYLLN 287 (937)
Q Consensus 216 ~~LdLS~N~--Lt--~L~~l~~~l~sL~~L~Ls~N~-Lt~--Lp~L~~L~sL~~LdLS~N~-Ls~l~~l~~L~~L~sL~~ 287 (937)
++|+|++|. ++ .++.....+++|+.|+|++|. ++. ++.+..+++|+.|+|++|. +.. ..+..+..+++|+.
T Consensus 198 ~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~-~~~~~l~~~~~L~~ 276 (336)
T 2ast_B 198 TQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIP-ETLLELGEIPTLKT 276 (336)
T ss_dssp CEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCG-GGGGGGGGCTTCCE
T ss_pred CEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCH-HHHHHHhcCCCCCE
Confidence 888888884 43 344555556788888888887 554 3467778888888888885 222 12235677888888
Q ss_pred EEecCCCCCCCcchhhhHhhhcCCCceeccCCccCCh
Q 002315 288 LWLEGNPLCCSRWYRAQVFSYFAHPAKLKVDGKEIST 324 (937)
Q Consensus 288 L~Ls~NpLt~~~~~r~~~~~~l~~L~~L~LdgN~Is~ 324 (937)
|+|++| +.... + ..+. ..+..|.+++|.++.
T Consensus 277 L~l~~~-i~~~~-~--~~l~--~~l~~L~l~~n~l~~ 307 (336)
T 2ast_B 277 LQVFGI-VPDGT-L--QLLK--EALPHLQINCSHFTT 307 (336)
T ss_dssp EECTTS-SCTTC-H--HHHH--HHSTTSEESCCCSCC
T ss_pred EeccCc-cCHHH-H--HHHH--hhCcceEEecccCcc
Confidence 888888 43221 1 1111 224455577777763
No 96
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.68 E-value=8.4e-17 Score=178.30 Aligned_cols=224 Identities=14% Similarity=0.036 Sum_probs=166.6
Q ss_pred chHHHHHhcCCCCCcEEEccCCCCCCCCCCCCCCCCCCcEEEeeCCCCCccch-hhHhhhhhhhhhh-hccCCCcccchh
Q 002315 76 LEQLRRILKLLTSLKVVSALPPPARDPTPLSLLPFCRLKVLELRGCDLSTSAA-KGLLELRHTLEKI-ICHNSTNALRHV 153 (937)
Q Consensus 76 le~Lp~~L~~L~~Lk~LdLs~N~Is~~iP~sLs~L~~L~~LdLS~N~Ls~~lp-~~L~~L~~Ll~Ll-L~~N~L~~L~~l 153 (937)
+..+|..+ .++|+.|+|++|.|+.+.+.+|.++++|++|+|++|.+.+.+| ..|.+++++++++ +..|++..++..
T Consensus 21 Lt~iP~~l--~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~ 98 (350)
T 4ay9_X 21 VTEIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPE 98 (350)
T ss_dssp CCSCCTTC--CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEECTT
T ss_pred CCccCcCc--CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccCch
Confidence 44566543 3679999999999987767789999999999999999876554 4567787776654 445776666543
Q ss_pred cccchhcccCCCCCCCccEEEccCCcCccchh-hcCCCCCCcEEECCC-CCCCCCc--CcCCC-CCCCEEECCCCCCCCc
Q 002315 154 FASRIVEIKDSPQWNRLSFVSCSCNRLVIMDE-SLQLLPAVETLDLSR-NKFAKVD--NLRKC-VNLKHLDLGFNNLRSI 228 (937)
Q Consensus 154 ~~~~i~~l~~l~~l~~L~~L~Ls~N~Ls~LP~-sL~~L~~L~~LdLs~-N~L~~l~--~L~~L-~~L~~LdLS~N~Lt~L 228 (937)
. +..+++|++|++++|.|..+|. .+.....+..|++.. |.+..++ .|..+ ..|+.|+|++|.|+.+
T Consensus 99 ~---------f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~i 169 (350)
T 4ay9_X 99 A---------FQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEI 169 (350)
T ss_dssp S---------BCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEE
T ss_pred h---------hhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccccCC
Confidence 2 2356789999999999997765 455667788888855 6777764 45665 4688999999999998
Q ss_pred ccccccccccceeccc-Cccccccc--cCCCCCCCCEEEccCCCCCCCchhhhhcCCCCCCEEEecCCC-CCCCcchhhh
Q 002315 229 AAFSEVSCHIVKLVLR-NNALTTLR--GIENLKSLEGLDISYNIISTFSELEFLASLPYLLNLWLEGNP-LCCSRWYRAQ 304 (937)
Q Consensus 229 ~~l~~~l~sL~~L~Ls-~N~Lt~Lp--~L~~L~sL~~LdLS~N~Ls~l~~l~~L~~L~sL~~L~Ls~Np-Lt~~~~~r~~ 304 (937)
+...+...+|+.|+++ +|.++.+| .|..+++|+.|+|++|+|+.+|. ..+.+|+.|.+.++. +...+
T Consensus 170 ~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~----~~~~~L~~L~~l~~~~l~~lP----- 240 (350)
T 4ay9_X 170 HNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPS----YGLENLKKLRARSTYNLKKLP----- 240 (350)
T ss_dssp CTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCCS----SSCTTCCEEECTTCTTCCCCC-----
T ss_pred ChhhccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCccCh----hhhccchHhhhccCCCcCcCC-----
Confidence 8766666789999997 47888886 57899999999999999999874 345567777665543 44333
Q ss_pred HhhhcCCCceeccCC
Q 002315 305 VFSYFAHPAKLKVDG 319 (937)
Q Consensus 305 ~~~~l~~L~~L~Ldg 319 (937)
.+..++.|+.+.+..
T Consensus 241 ~l~~l~~L~~l~l~~ 255 (350)
T 4ay9_X 241 TLEKLVALMEASLTY 255 (350)
T ss_dssp CTTTCCSCCEEECSC
T ss_pred CchhCcChhhCcCCC
Confidence 245677888888753
No 97
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.67 E-value=1.7e-16 Score=169.63 Aligned_cols=171 Identities=19% Similarity=0.294 Sum_probs=148.4
Q ss_pred hhhhhhhhhhccCCCcccchhcccchhcccCCCCCCCccEEEccCCcCccchhhcCCCCCCcEEECCCCCCCCCcCcCCC
Q 002315 133 ELRHTLEKIICHNSTNALRHVFASRIVEIKDSPQWNRLSFVSCSCNRLVIMDESLQLLPAVETLDLSRNKFAKVDNLRKC 212 (937)
Q Consensus 133 ~L~~Ll~LlL~~N~L~~L~~l~~~~i~~l~~l~~l~~L~~L~Ls~N~Ls~LP~sL~~L~~L~~LdLs~N~L~~l~~L~~L 212 (937)
.+.++..+.+..|.+..+... ..+++|+.|++++|.|+.+| .+..+++|+.|+|++|+|+.++.+..+
T Consensus 17 ~l~~l~~l~l~~~~i~~~~~~-----------~~l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~L~~N~i~~~~~l~~l 84 (263)
T 1xeu_A 17 GLANAVKQNLGKQSVTDLVSQ-----------KELSGVQNFNGDNSNIQSLA-GMQFFTNLKELHLSHNQISDLSPLKDL 84 (263)
T ss_dssp HHHHHHHHHHTCSCTTSEECH-----------HHHTTCSEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCCGGGTTC
T ss_pred HHHHHHHHHhcCCCcccccch-----------hhcCcCcEEECcCCCcccch-HHhhCCCCCEEECCCCccCCChhhccC
Confidence 455666677777776655421 24568999999999999997 788999999999999999999889999
Q ss_pred CCCCEEECCCCCCCCcccccccccccceecccCccccccccCCCCCCCCEEEccCCCCCCCchhhhhcCCCCCCEEEecC
Q 002315 213 VNLKHLDLGFNNLRSIAAFSEVSCHIVKLVLRNNALTTLRGIENLKSLEGLDISYNIISTFSELEFLASLPYLLNLWLEG 292 (937)
Q Consensus 213 ~~L~~LdLS~N~Lt~L~~l~~~l~sL~~L~Ls~N~Lt~Lp~L~~L~sL~~LdLS~N~Ls~l~~l~~L~~L~sL~~L~Ls~ 292 (937)
++|+.|+|++|.|+.++.... ++|+.|+|++|.|+.++.+..+++|+.|+|++|+|++++ .+..+++|+.|+|++
T Consensus 85 ~~L~~L~L~~N~l~~l~~~~~--~~L~~L~L~~N~l~~~~~l~~l~~L~~L~Ls~N~i~~~~---~l~~l~~L~~L~L~~ 159 (263)
T 1xeu_A 85 TKLEELSVNRNRLKNLNGIPS--ACLSRLFLDNNELRDTDSLIHLKNLEILSIRNNKLKSIV---MLGFLSKLEVLDLHG 159 (263)
T ss_dssp SSCCEEECCSSCCSCCTTCCC--SSCCEEECCSSCCSBSGGGTTCTTCCEEECTTSCCCBCG---GGGGCTTCCEEECTT
T ss_pred CCCCEEECCCCccCCcCcccc--CcccEEEccCCccCCChhhcCcccccEEECCCCcCCCCh---HHccCCCCCEEECCC
Confidence 999999999999999887655 899999999999999999999999999999999999985 478899999999999
Q ss_pred CCCCCCcchhhhHhhhcCCCceeccCCccCChh
Q 002315 293 NPLCCSRWYRAQVFSYFAHPAKLKVDGKEISTR 325 (937)
Q Consensus 293 NpLt~~~~~r~~~~~~l~~L~~L~LdgN~Is~~ 325 (937)
|++... ..+..++.|+.++|.+|++++.
T Consensus 160 N~i~~~-----~~l~~l~~L~~L~l~~N~~~~~ 187 (263)
T 1xeu_A 160 NEITNT-----GGLTRLKKVNWIDLTGQKCVNE 187 (263)
T ss_dssp SCCCBC-----TTSTTCCCCCEEEEEEEEEECC
T ss_pred CcCcch-----HHhccCCCCCEEeCCCCcccCC
Confidence 999865 3466789999999999999743
No 98
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.65 E-value=1.1e-15 Score=181.54 Aligned_cols=142 Identities=23% Similarity=0.245 Sum_probs=117.7
Q ss_pred CCccEEEccCCcCccchhhcCCCCCCcEEECCCCCCCCCcCcCCCCCCCEEECCCCCCCCcccccccccccceecccCcc
Q 002315 168 NRLSFVSCSCNRLVIMDESLQLLPAVETLDLSRNKFAKVDNLRKCVNLKHLDLGFNNLRSIAAFSEVSCHIVKLVLRNNA 247 (937)
Q Consensus 168 ~~L~~L~Ls~N~Ls~LP~sL~~L~~L~~LdLs~N~L~~l~~L~~L~~L~~LdLS~N~Lt~L~~l~~~l~sL~~L~Ls~N~ 247 (937)
++|++|+|++|.|+.+| ..+++|+.|+|++|.|+.++.+.. +|+.|+|++|.|+.+|. .+++|+.|+|++|.
T Consensus 80 ~~L~~L~Ls~N~l~~ip---~~l~~L~~L~Ls~N~l~~ip~l~~--~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~N~ 151 (571)
T 3cvr_A 80 PQITVLEITQNALISLP---ELPASLEYLDACDNRLSTLPELPA--SLKHLDVDNNQLTMLPE---LPALLEYINADNNQ 151 (571)
T ss_dssp TTCSEEECCSSCCSCCC---CCCTTCCEEECCSSCCSCCCCCCT--TCCEEECCSSCCSCCCC---CCTTCCEEECCSSC
T ss_pred CCCCEEECcCCCCcccc---cccCCCCEEEccCCCCCCcchhhc--CCCEEECCCCcCCCCCC---cCccccEEeCCCCc
Confidence 36899999999999998 568999999999999999877554 99999999999999887 56899999999999
Q ss_pred ccccccCCCCCCCCEEEccCCCCCCCchhhhhcCCCCCCEEEecCCCCCCCcchhhhHhhhcCCCceeccCCccCCh
Q 002315 248 LTTLRGIENLKSLEGLDISYNIISTFSELEFLASLPYLLNLWLEGNPLCCSRWYRAQVFSYFAHPAKLKVDGKEIST 324 (937)
Q Consensus 248 Lt~Lp~L~~L~sL~~LdLS~N~Ls~l~~l~~L~~L~sL~~L~Ls~NpLt~~~~~r~~~~~~l~~L~~L~LdgN~Is~ 324 (937)
|+.+|. .+++|+.|+|++|.|+.+|. +. ++|+.|+|++|.|+..+.+....+...+.|+.|+|++|.|+.
T Consensus 152 l~~lp~--~l~~L~~L~Ls~N~L~~lp~---l~--~~L~~L~Ls~N~L~~lp~~~~~L~~~~~~L~~L~Ls~N~l~~ 221 (571)
T 3cvr_A 152 LTMLPE--LPTSLEVLSVRNNQLTFLPE---LP--ESLEALDVSTNLLESLPAVPVRNHHSEETEIFFRCRENRITH 221 (571)
T ss_dssp CSCCCC--CCTTCCEEECCSSCCSCCCC---CC--TTCCEEECCSSCCSSCCCCC--------CCEEEECCSSCCCC
T ss_pred cCcCCC--cCCCcCEEECCCCCCCCcch---hh--CCCCEEECcCCCCCchhhHHHhhhcccccceEEecCCCccee
Confidence 999986 68899999999999999874 44 899999999999986664211111112223999999999984
No 99
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.65 E-value=3.3e-16 Score=174.42 Aligned_cols=175 Identities=26% Similarity=0.276 Sum_probs=112.1
Q ss_pred cEEEccCCCCCCCCCCCCCCCCCCcEEEeeCCCCCccchhhHhhhhhhhhhhhccCCCcccchhcccchhcccCCCCCCC
Q 002315 90 KVVSALPPPARDPTPLSLLPFCRLKVLELRGCDLSTSAAKGLLELRHTLEKIICHNSTNALRHVFASRIVEIKDSPQWNR 169 (937)
Q Consensus 90 k~LdLs~N~Is~~iP~sLs~L~~L~~LdLS~N~Ls~~lp~~L~~L~~Ll~LlL~~N~L~~L~~l~~~~i~~l~~l~~l~~ 169 (937)
+.++++++.++. +|..+. +.|+.|+|++|.|++..+..+. ..+++
T Consensus 21 ~~l~c~~~~l~~-iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~--------------------------------~~l~~ 65 (361)
T 2xot_A 21 NILSCSKQQLPN-VPQSLP--SYTALLDLSHNNLSRLRAEWTP--------------------------------TRLTN 65 (361)
T ss_dssp TEEECCSSCCSS-CCSSCC--TTCSEEECCSSCCCEECTTSSS--------------------------------SCCTT
T ss_pred CEEEeCCCCcCc-cCccCC--CCCCEEECCCCCCCccChhhhh--------------------------------hcccc
Confidence 467777777764 354443 4577777777777653332221 03446
Q ss_pred ccEEEccCCcCccchh-hcCCCCCCcEEECCCCCCCCCc--CcCCCCCCCEEECCCCCCCCccc-ccccccccceecccC
Q 002315 170 LSFVSCSCNRLVIMDE-SLQLLPAVETLDLSRNKFAKVD--NLRKCVNLKHLDLGFNNLRSIAA-FSEVSCHIVKLVLRN 245 (937)
Q Consensus 170 L~~L~Ls~N~Ls~LP~-sL~~L~~L~~LdLs~N~L~~l~--~L~~L~~L~~LdLS~N~Lt~L~~-l~~~l~sL~~L~Ls~ 245 (937)
|+.|+|++|.|+.++. .|..+++|++|+|++|+|+.++ .|..+++|+.|+|++|.|+.+++ .+..+++|+.|+|++
T Consensus 66 L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~ 145 (361)
T 2xot_A 66 LHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQ 145 (361)
T ss_dssp CCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred cCEEECCCCcCCccChhhccCCCCCCEEECCCCcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCC
Confidence 7777777777776653 5777777777777777777654 46677777777777777776643 344556677777777
Q ss_pred ccccccc--cC---CCCCCCCEEEccCCCCCCCchhhhhcCCCC--CCEEEecCCCCCCCcc
Q 002315 246 NALTTLR--GI---ENLKSLEGLDISYNIISTFSELEFLASLPY--LLNLWLEGNPLCCSRW 300 (937)
Q Consensus 246 N~Lt~Lp--~L---~~L~sL~~LdLS~N~Ls~l~~l~~L~~L~s--L~~L~Ls~NpLt~~~~ 300 (937)
|+|+.++ .+ ..+++|+.|+|++|.|+.++. ..+..++. |+.|+|.+|||.|.|.
T Consensus 146 N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~-~~~~~l~~~~l~~l~l~~N~~~C~C~ 206 (361)
T 2xot_A 146 NQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPL-TDLQKLPAWVKNGLYLHNNPLECDCK 206 (361)
T ss_dssp SCCCSCCGGGTC----CTTCCEEECCSSCCCCCCH-HHHHHSCHHHHTTEECCSSCEECCHH
T ss_pred CcCCeeCHHHhcCcccCCcCCEEECCCCCCCccCH-HHhhhccHhhcceEEecCCCccCCcC
Confidence 7777664 22 457777777777777777663 44555555 3667777777777663
No 100
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.64 E-value=7.5e-16 Score=184.01 Aligned_cols=189 Identities=21% Similarity=0.229 Sum_probs=157.7
Q ss_pred CcEEEccCCCCCCCCCCCCCCCCCCcEEEeeCCCCCccchhhHhhhhhhhhhhhccCCCcccchhcccchhcccCCCCCC
Q 002315 89 LKVVSALPPPARDPTPLSLLPFCRLKVLELRGCDLSTSAAKGLLELRHTLEKIICHNSTNALRHVFASRIVEIKDSPQWN 168 (937)
Q Consensus 89 Lk~LdLs~N~Is~~iP~sLs~L~~L~~LdLS~N~Ls~~lp~~L~~L~~Ll~LlL~~N~L~~L~~l~~~~i~~l~~l~~l~ 168 (937)
+..+.|..+.+.+.. .+..|++|+.|+|++|.|.. ++ .+ ..++
T Consensus 23 l~~l~l~~~~i~~~~--~~~~L~~L~~L~l~~n~i~~-l~-~l---------------------------------~~l~ 65 (605)
T 1m9s_A 23 TIKDNLKKKSVTDAV--TQNELNSIDQIIANNSDIKS-VQ-GI---------------------------------QYLP 65 (605)
T ss_dssp HHHHHTTCSCTTSEE--CHHHHTTCCCCBCTTCCCCC-CT-TG---------------------------------GGCT
T ss_pred HHHHhccCCCccccc--chhcCCCCCEEECcCCCCCC-Ch-HH---------------------------------ccCC
Confidence 334455556555442 24567778888888877764 22 12 1356
Q ss_pred CccEEEccCCcCccchhhcCCCCCCcEEECCCCCCCCCcCcCCCCCCCEEECCCCCCCCcccccccccccceecccCccc
Q 002315 169 RLSFVSCSCNRLVIMDESLQLLPAVETLDLSRNKFAKVDNLRKCVNLKHLDLGFNNLRSIAAFSEVSCHIVKLVLRNNAL 248 (937)
Q Consensus 169 ~L~~L~Ls~N~Ls~LP~sL~~L~~L~~LdLs~N~L~~l~~L~~L~~L~~LdLS~N~Lt~L~~l~~~l~sL~~L~Ls~N~L 248 (937)
+|+.|+|++|.|..+|. +..+++|+.|+|++|.|..++.+..+++|+.|+|++|.|..++. ...+++|+.|+|++|.|
T Consensus 66 ~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~l~~l~~l~~l~~L~~L~Ls~N~l~~l~~-l~~l~~L~~L~Ls~N~l 143 (605)
T 1m9s_A 66 NVTKLFLNGNKLTDIKP-LTNLKNLGWLFLDENKIKDLSSLKDLKKLKSLSLEHNGISDING-LVHLPQLESLYLGNNKI 143 (605)
T ss_dssp TCCEEECTTSCCCCCGG-GGGCTTCCEEECCSSCCCCCTTSTTCTTCCEEECTTSCCCCCGG-GGGCTTCSEEECCSSCC
T ss_pred CCCEEEeeCCCCCCChh-hccCCCCCEEECcCCCCCCChhhccCCCCCEEEecCCCCCCCcc-ccCCCccCEEECCCCcc
Confidence 89999999999998876 88999999999999999999999999999999999999999865 44568999999999999
Q ss_pred cccccCCCCCCCCEEEccCCCCCCCchhhhhcCCCCCCEEEecCCCCCCCcchhhhHhhhcCCCceeccCCccCCh
Q 002315 249 TTLRGIENLKSLEGLDISYNIISTFSELEFLASLPYLLNLWLEGNPLCCSRWYRAQVFSYFAHPAKLKVDGKEIST 324 (937)
Q Consensus 249 t~Lp~L~~L~sL~~LdLS~N~Ls~l~~l~~L~~L~sL~~L~Ls~NpLt~~~~~r~~~~~~l~~L~~L~LdgN~Is~ 324 (937)
+.++.+..+++|+.|+|++|.|..+++ +..+++|+.|+|++|+|...+ .+..++.|+.|+|++|++..
T Consensus 144 ~~l~~l~~l~~L~~L~Ls~N~l~~~~~---l~~l~~L~~L~Ls~N~i~~l~-----~l~~l~~L~~L~L~~N~l~~ 211 (605)
T 1m9s_A 144 TDITVLSRLTKLDTLSLEDNQISDIVP---LAGLTKLQNLYLSKNHISDLR-----ALAGLKNLDVLELFSQECLN 211 (605)
T ss_dssp CCCGGGGSCTTCSEEECCSSCCCCCGG---GTTCTTCCEEECCSSCCCBCG-----GGTTCTTCSEEECCSEEEEC
T ss_pred CCchhhcccCCCCEEECcCCcCCCchh---hccCCCCCEEECcCCCCCCCh-----HHccCCCCCEEEccCCcCcC
Confidence 999999999999999999999999864 889999999999999998643 36678999999999999874
No 101
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.64 E-value=1.4e-15 Score=159.01 Aligned_cols=131 Identities=24% Similarity=0.341 Sum_probs=98.6
Q ss_pred CCccEEEccCCcCccc-hhhcCCCCCCcEEECCCCCCCCCc--CcCCCCCCCEEECCCCCCCCcccc-cccccccceecc
Q 002315 168 NRLSFVSCSCNRLVIM-DESLQLLPAVETLDLSRNKFAKVD--NLRKCVNLKHLDLGFNNLRSIAAF-SEVSCHIVKLVL 243 (937)
Q Consensus 168 ~~L~~L~Ls~N~Ls~L-P~sL~~L~~L~~LdLs~N~L~~l~--~L~~L~~L~~LdLS~N~Lt~L~~l-~~~l~sL~~L~L 243 (937)
++|++|+|++|.|..+ |..|..+++|+.|+|++|.|..++ .|..+++|+.|+|++|.|+.++.. +..+++|+.|+|
T Consensus 40 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L 119 (229)
T 3e6j_A 40 TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFM 119 (229)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCcCCccChhHhCcchhhCeEec
Confidence 4677888888888755 456777888888888888887764 367778888888888888777653 345677888888
Q ss_pred cCccccccc-cCCCCCCCCEEEccCCCCCCCchhhhhcCCCCCCEEEecCCCCCCCc
Q 002315 244 RNNALTTLR-GIENLKSLEGLDISYNIISTFSELEFLASLPYLLNLWLEGNPLCCSR 299 (937)
Q Consensus 244 s~N~Lt~Lp-~L~~L~sL~~LdLS~N~Ls~l~~l~~L~~L~sL~~L~Ls~NpLt~~~ 299 (937)
++|+|+.+| .+..+++|++|+|++|.|+.++. ..+..+++|+.|+|.+|++.|.+
T Consensus 120 s~N~l~~lp~~~~~l~~L~~L~L~~N~l~~~~~-~~~~~l~~L~~L~l~~N~~~c~c 175 (229)
T 3e6j_A 120 CCNKLTELPRGIERLTHLTHLALDQNQLKSIPH-GAFDRLSSLTHAYLFGNPWDCEC 175 (229)
T ss_dssp CSSCCCSCCTTGGGCTTCSEEECCSSCCCCCCT-TTTTTCTTCCEEECTTSCBCTTB
T ss_pred cCCcccccCcccccCCCCCEEECCCCcCCccCH-HHHhCCCCCCEEEeeCCCccCCc
Confidence 888888775 66777888888888888887764 55677778888888888887775
No 102
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.62 E-value=3e-15 Score=155.62 Aligned_cols=130 Identities=20% Similarity=0.309 Sum_probs=76.7
Q ss_pred CccEEEccCCcCccchh-hcCCCCCCcEEECCCCCCCCC--cCcCCCCCCCEEECCCCCCCCcccc-cccccccceeccc
Q 002315 169 RLSFVSCSCNRLVIMDE-SLQLLPAVETLDLSRNKFAKV--DNLRKCVNLKHLDLGFNNLRSIAAF-SEVSCHIVKLVLR 244 (937)
Q Consensus 169 ~L~~L~Ls~N~Ls~LP~-sL~~L~~L~~LdLs~N~L~~l--~~L~~L~~L~~LdLS~N~Lt~L~~l-~~~l~sL~~L~Ls 244 (937)
.|+.|++++|.|+.+|. .|..+++|+.|+|++|.|+.+ ..|..+++|++|+|++|.|+.++.. +..+++|+.|+|+
T Consensus 33 ~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~ 112 (220)
T 2v9t_B 33 TITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLLN 112 (220)
T ss_dssp TCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCCccCHhHccCCCCCCEEECC
Confidence 55666666666665544 455566666666666666654 2456666666666666666665542 2345566666666
Q ss_pred Cccccccc--cCCCCCCCCEEEccCCCCCCCchhhhhcCCCCCCEEEecCCCCCCCc
Q 002315 245 NNALTTLR--GIENLKSLEGLDISYNIISTFSELEFLASLPYLLNLWLEGNPLCCSR 299 (937)
Q Consensus 245 ~N~Lt~Lp--~L~~L~sL~~LdLS~N~Ls~l~~l~~L~~L~sL~~L~Ls~NpLt~~~ 299 (937)
+|+|+.++ .+..+++|+.|+|++|.|+.++. ..+..+++|+.|+|++|+|.|.+
T Consensus 113 ~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~-~~~~~l~~L~~L~L~~N~~~c~c 168 (220)
T 2v9t_B 113 ANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAK-GTFSPLRAIQTMHLAQNPFICDC 168 (220)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCT-TTTTTCTTCCEEECCSSCEECSG
T ss_pred CCCCCEeCHHHcCCCCCCCEEECCCCcCCEECH-HHHhCCCCCCEEEeCCCCcCCCC
Confidence 66666652 45556666666666666666543 34555666666666666666554
No 103
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.61 E-value=2.5e-15 Score=156.19 Aligned_cols=154 Identities=21% Similarity=0.209 Sum_probs=134.9
Q ss_pred cEEEccCCcCccchhhcCCCCCCcEEECCCCCCCCCc--CcCCCCCCCEEECCCCCCCCcc-cccccccccceecccCcc
Q 002315 171 SFVSCSCNRLVIMDESLQLLPAVETLDLSRNKFAKVD--NLRKCVNLKHLDLGFNNLRSIA-AFSEVSCHIVKLVLRNNA 247 (937)
Q Consensus 171 ~~L~Ls~N~Ls~LP~sL~~L~~L~~LdLs~N~L~~l~--~L~~L~~L~~LdLS~N~Lt~L~-~l~~~l~sL~~L~Ls~N~ 247 (937)
+.++++++.++.+|..+. ++|+.|+|++|.|+.++ .|..+++|+.|+|++|.|+.+. ..+..+++|+.|+|++|.
T Consensus 14 ~~v~c~~~~l~~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~ 91 (220)
T 2v9t_B 14 NIVDCRGKGLTEIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNK 91 (220)
T ss_dssp TEEECTTSCCSSCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSC
T ss_pred CEEEcCCCCcCcCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCc
Confidence 578999999999988654 78999999999999875 7899999999999999999874 456677999999999999
Q ss_pred ccccc--cCCCCCCCCEEEccCCCCCCCchhhhhcCCCCCCEEEecCCCCCCCcchhhhHhhhcCCCceeccCCccCChh
Q 002315 248 LTTLR--GIENLKSLEGLDISYNIISTFSELEFLASLPYLLNLWLEGNPLCCSRWYRAQVFSYFAHPAKLKVDGKEISTR 325 (937)
Q Consensus 248 Lt~Lp--~L~~L~sL~~LdLS~N~Ls~l~~l~~L~~L~sL~~L~Ls~NpLt~~~~~r~~~~~~l~~L~~L~LdgN~Is~~ 325 (937)
|+.++ .+..+++|+.|+|++|.|+.+++ ..+..+++|+.|+|++|.|+..+ ...+..++.|+.++|.+|++.|.
T Consensus 92 l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~-~~~~~l~~L~~L~L~~N~l~~~~---~~~~~~l~~L~~L~L~~N~~~c~ 167 (220)
T 2v9t_B 92 ITELPKSLFEGLFSLQLLLLNANKINCLRV-DAFQDLHNLNLLSLYDNKLQTIA---KGTFSPLRAIQTMHLAQNPFICD 167 (220)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSSCCCCCCT-TTTTTCTTCCEEECCSSCCSCCC---TTTTTTCTTCCEEECCSSCEECS
T ss_pred CCccCHhHccCCCCCCEEECCCCCCCEeCH-HHcCCCCCCCEEECCCCcCCEEC---HHHHhCCCCCCEEEeCCCCcCCC
Confidence 99987 47899999999999999999865 67889999999999999998665 34567789999999999999987
Q ss_pred hHHHH
Q 002315 326 ELWER 330 (937)
Q Consensus 326 e~~~~ 330 (937)
....+
T Consensus 168 c~l~~ 172 (220)
T 2v9t_B 168 CHLKW 172 (220)
T ss_dssp GGGHH
T ss_pred CccHH
Confidence 65443
No 104
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.61 E-value=1.6e-15 Score=154.42 Aligned_cols=150 Identities=18% Similarity=0.206 Sum_probs=126.0
Q ss_pred CCCCccEEEccCCcCccchhhcCCCCCCcEEECCCCCCCCCcCcCCCCCCCEEECCCCCCCC-cccccccccccceeccc
Q 002315 166 QWNRLSFVSCSCNRLVIMDESLQLLPAVETLDLSRNKFAKVDNLRKCVNLKHLDLGFNNLRS-IAAFSEVSCHIVKLVLR 244 (937)
Q Consensus 166 ~l~~L~~L~Ls~N~Ls~LP~sL~~L~~L~~LdLs~N~L~~l~~L~~L~~L~~LdLS~N~Lt~-L~~l~~~l~sL~~L~Ls 244 (937)
.+++|+.|++++|.|..+| .+..+++|++|++++|.+..++.+..+++|++|+|++|.++. .+.....+++|+.|+|+
T Consensus 42 ~l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~l~~n~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls 120 (197)
T 4ezg_A 42 QMNSLTYITLANINVTDLT-GIEYAHNIKDLTINNIHATNYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDIS 120 (197)
T ss_dssp HHHTCCEEEEESSCCSCCT-TGGGCTTCSEEEEESCCCSCCGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEECC
T ss_pred hcCCccEEeccCCCccChH-HHhcCCCCCEEEccCCCCCcchhhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEec
Confidence 3457899999999999888 788999999999999999888889999999999999999986 34455567899999999
Q ss_pred Cccccc--cccCCCCCCCCEEEccCCC-CCCCchhhhhcCCCCCCEEEecCCCCCCCcchhhhHhhhcCCCceeccCCcc
Q 002315 245 NNALTT--LRGIENLKSLEGLDISYNI-ISTFSELEFLASLPYLLNLWLEGNPLCCSRWYRAQVFSYFAHPAKLKVDGKE 321 (937)
Q Consensus 245 ~N~Lt~--Lp~L~~L~sL~~LdLS~N~-Ls~l~~l~~L~~L~sL~~L~Ls~NpLt~~~~~r~~~~~~l~~L~~L~LdgN~ 321 (937)
+|.|+. ++.+..+++|++|+|++|. +..++ .+..+++|+.|+|++|+++..+ .+..++.|+.+++++|+
T Consensus 121 ~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~---~l~~l~~L~~L~l~~n~i~~~~-----~l~~l~~L~~L~l~~N~ 192 (197)
T 4ezg_A 121 HSAHDDSILTKINTLPKVNSIDLSYNGAITDIM---PLKTLPELKSLNIQFDGVHDYR-----GIEDFPKLNQLYAFSQT 192 (197)
T ss_dssp SSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG---GGGGCSSCCEEECTTBCCCCCT-----TGGGCSSCCEEEECBC-
T ss_pred CCccCcHhHHHHhhCCCCCEEEccCCCCccccH---hhcCCCCCCEEECCCCCCcChH-----HhccCCCCCEEEeeCcc
Confidence 999987 4578899999999999998 88875 4788999999999999997643 45678999999999999
Q ss_pred CCh
Q 002315 322 IST 324 (937)
Q Consensus 322 Is~ 324 (937)
|..
T Consensus 193 i~~ 195 (197)
T 4ezg_A 193 IGG 195 (197)
T ss_dssp ---
T ss_pred cCC
Confidence 863
No 105
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.61 E-value=2.1e-15 Score=153.47 Aligned_cols=106 Identities=18% Similarity=0.274 Sum_probs=51.8
Q ss_pred CCCCCCcEEECCCCCCCC--CcCcCCCCCCCEEECCCCCCCC-cccccccccccceecccCcc-ccccccCCCCCCCCEE
Q 002315 188 QLLPAVETLDLSRNKFAK--VDNLRKCVNLKHLDLGFNNLRS-IAAFSEVSCHIVKLVLRNNA-LTTLRGIENLKSLEGL 263 (937)
Q Consensus 188 ~~L~~L~~LdLs~N~L~~--l~~L~~L~~L~~LdLS~N~Lt~-L~~l~~~l~sL~~L~Ls~N~-Lt~Lp~L~~L~sL~~L 263 (937)
..+++|++|++++|.++. ++.+..+++|++|+|++|.++. .+.....+++|+.|+|++|. ++.++.+..+++|+.|
T Consensus 85 ~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~~l~~l~~L~~L 164 (197)
T 4ezg_A 85 SGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIMPLKTLPELKSL 164 (197)
T ss_dssp TTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCGGGGGCSSCCEE
T ss_pred hcCCCCCEEEeECCccCcccChhhcCCCCCCEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCccccHhhcCCCCCCEE
Confidence 334444444444444443 2344444444444444444443 12222333455555555554 4455555556666666
Q ss_pred EccCCCCCCCchhhhhcCCCCCCEEEecCCCCC
Q 002315 264 DISYNIISTFSELEFLASLPYLLNLWLEGNPLC 296 (937)
Q Consensus 264 dLS~N~Ls~l~~l~~L~~L~sL~~L~Ls~NpLt 296 (937)
+|++|.|++++ .+..+++|+.|++++|+|.
T Consensus 165 ~l~~n~i~~~~---~l~~l~~L~~L~l~~N~i~ 194 (197)
T 4ezg_A 165 NIQFDGVHDYR---GIEDFPKLNQLYAFSQTIG 194 (197)
T ss_dssp ECTTBCCCCCT---TGGGCSSCCEEEECBC---
T ss_pred ECCCCCCcChH---HhccCCCCCEEEeeCcccC
Confidence 66666666554 2455666666666666653
No 106
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.60 E-value=3.9e-15 Score=165.77 Aligned_cols=157 Identities=23% Similarity=0.246 Sum_probs=133.3
Q ss_pred CccEEEccCCcCccchhh-cC-CCCCCcEEECCCCCCCCCc--CcCCCCCCCEEECCCCCCCCccc-ccccccccceecc
Q 002315 169 RLSFVSCSCNRLVIMDES-LQ-LLPAVETLDLSRNKFAKVD--NLRKCVNLKHLDLGFNNLRSIAA-FSEVSCHIVKLVL 243 (937)
Q Consensus 169 ~L~~L~Ls~N~Ls~LP~s-L~-~L~~L~~LdLs~N~L~~l~--~L~~L~~L~~LdLS~N~Lt~L~~-l~~~l~sL~~L~L 243 (937)
.++.|+|++|.|+.++.. +. .+++|+.|+|++|+|+.++ .|..+++|++|+|++|.|+.++. .+..+++|+.|+|
T Consensus 40 ~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 119 (361)
T 2xot_A 40 YTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLL 119 (361)
T ss_dssp TCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEEC
T ss_pred CCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCCcCCcCCHHHhCCCcCCCEEEC
Confidence 588999999999988764 55 8999999999999999875 69999999999999999999876 4566799999999
Q ss_pred cCccccccc--cCCCCCCCCEEEccCCCCCCCchhhhh---cCCCCCCEEEecCCCCCCCcchhhhHhhhcCC--Cceec
Q 002315 244 RNNALTTLR--GIENLKSLEGLDISYNIISTFSELEFL---ASLPYLLNLWLEGNPLCCSRWYRAQVFSYFAH--PAKLK 316 (937)
Q Consensus 244 s~N~Lt~Lp--~L~~L~sL~~LdLS~N~Ls~l~~l~~L---~~L~sL~~L~Ls~NpLt~~~~~r~~~~~~l~~--L~~L~ 316 (937)
++|+|+.++ .+..+++|+.|+|++|.|+.++. ..+ ..+++|+.|+|++|+|...+ ...+..++. ++.++
T Consensus 120 ~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~-~~~~~~~~l~~L~~L~L~~N~l~~l~---~~~~~~l~~~~l~~l~ 195 (361)
T 2xot_A 120 YNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPV-ELIKDGNKLPKLMLLDLSSNKLKKLP---LTDLQKLPAWVKNGLY 195 (361)
T ss_dssp CSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCG-GGTC----CTTCCEEECCSSCCCCCC---HHHHHHSCHHHHTTEE
T ss_pred CCCcccEECHHHhCCcccCCEEECCCCcCCeeCH-HHhcCcccCCcCCEEECCCCCCCccC---HHHhhhccHhhcceEE
Confidence 999999974 78999999999999999999875 444 57999999999999998665 344555655 47899
Q ss_pred cCCccCChhhHHH
Q 002315 317 VDGKEISTRELWE 329 (937)
Q Consensus 317 LdgN~Is~~e~~~ 329 (937)
|++|++.|.....
T Consensus 196 l~~N~~~C~C~l~ 208 (361)
T 2xot_A 196 LHNNPLECDCKLY 208 (361)
T ss_dssp CCSSCEECCHHHH
T ss_pred ecCCCccCCcCcH
Confidence 9999999887543
No 107
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.59 E-value=4.2e-15 Score=154.50 Aligned_cols=131 Identities=21% Similarity=0.306 Sum_probs=102.7
Q ss_pred CccEEEccCCcCccchh--hcCCCCCCcEEECCCCCCCCCc--CcCCCCCCCEEECCCCCCCCcccc-cccccccceecc
Q 002315 169 RLSFVSCSCNRLVIMDE--SLQLLPAVETLDLSRNKFAKVD--NLRKCVNLKHLDLGFNNLRSIAAF-SEVSCHIVKLVL 243 (937)
Q Consensus 169 ~L~~L~Ls~N~Ls~LP~--sL~~L~~L~~LdLs~N~L~~l~--~L~~L~~L~~LdLS~N~Lt~L~~l-~~~l~sL~~L~L 243 (937)
.++.|+|++|.|+.++. .|..+++|+.|+|++|.|+.++ .|..+++|++|+|++|.|+.+++. +..+++|+.|+|
T Consensus 33 ~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 112 (220)
T 2v70_A 33 YTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLML 112 (220)
T ss_dssp TCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCCCCGGGGTTCSSCCEEEC
T ss_pred CCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCccCccCHhHhcCCcCCCEEEC
Confidence 45788888888886632 4778888888888888888764 578888888888888888887653 456678888888
Q ss_pred cCccccccc--cCCCCCCCCEEEccCCCCCCCchhhhhcCCCCCCEEEecCCCCCCCcc
Q 002315 244 RNNALTTLR--GIENLKSLEGLDISYNIISTFSELEFLASLPYLLNLWLEGNPLCCSRW 300 (937)
Q Consensus 244 s~N~Lt~Lp--~L~~L~sL~~LdLS~N~Ls~l~~l~~L~~L~sL~~L~Ls~NpLt~~~~ 300 (937)
++|+|+.++ .+..+++|+.|+|++|.|+.+++ ..+..+++|+.|+|++|+|.|.+.
T Consensus 113 s~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~-~~~~~l~~L~~L~L~~N~l~c~c~ 170 (220)
T 2v70_A 113 RSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAP-GAFDTLHSLSTLNLLANPFNCNCY 170 (220)
T ss_dssp TTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCT-TTTTTCTTCCEEECCSCCEECSGG
T ss_pred CCCcCCeECHhHcCCCccCCEEECCCCcCCEECH-HHhcCCCCCCEEEecCcCCcCCCc
Confidence 888888863 67788888888888888888754 567788888888888888887764
No 108
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.59 E-value=4.2e-16 Score=169.78 Aligned_cols=223 Identities=16% Similarity=0.118 Sum_probs=175.2
Q ss_pred CCCCcEEEccCCCCCCCCCCCCCCC--CCCcEEEeeCCCCCccchhhHhhhhhhhhhhhccCCCcc--cchhcccchhcc
Q 002315 86 LTSLKVVSALPPPARDPTPLSLLPF--CRLKVLELRGCDLSTSAAKGLLELRHTLEKIICHNSTNA--LRHVFASRIVEI 161 (937)
Q Consensus 86 L~~Lk~LdLs~N~Is~~iP~sLs~L--~~L~~LdLS~N~Ls~~lp~~L~~L~~Ll~LlL~~N~L~~--L~~l~~~~i~~l 161 (937)
-..++.|++++|.+. |..+..+ ++|+.|++++|.+.+..+. +..++++..+.+.+|.+.. ++..
T Consensus 46 ~~~~~~l~l~~~~~~---~~~~~~~~~~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~-------- 113 (336)
T 2ast_B 46 ESLWQTLDLTGKNLH---PDVTGRLLSQGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGI-------- 113 (336)
T ss_dssp STTSSEEECTTCBCC---HHHHHHHHHTTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHH--------
T ss_pred chhheeeccccccCC---HHHHHhhhhccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHHHHHH--------
Confidence 345899999998876 5566777 8999999999999886654 5678889999999886532 2222
Q ss_pred cCCCCCCCccEEEccCCcCc-cchhhcCCCCCCcEEECCCC-CCCC--Cc-CcCCCCCCCEEECCCC-CCCC--cccccc
Q 002315 162 KDSPQWNRLSFVSCSCNRLV-IMDESLQLLPAVETLDLSRN-KFAK--VD-NLRKCVNLKHLDLGFN-NLRS--IAAFSE 233 (937)
Q Consensus 162 ~~l~~l~~L~~L~Ls~N~Ls-~LP~sL~~L~~L~~LdLs~N-~L~~--l~-~L~~L~~L~~LdLS~N-~Lt~--L~~l~~ 233 (937)
+..+++|++|++++|.++ .+|..+..+++|++|+|++| .++. ++ .+..+++|++|+|++| .++. ++....
T Consensus 114 --~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~ 191 (336)
T 2ast_B 114 --LSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVA 191 (336)
T ss_dssp --HTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHH
T ss_pred --HhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHH
Confidence 135679999999999998 67778999999999999999 6874 44 4778899999999999 8885 455566
Q ss_pred ccc-ccceecccCcc--cc--ccc-cCCCCCCCCEEEccCCC-CCCCchhhhhcCCCCCCEEEecCCCCCCCcchhhhHh
Q 002315 234 VSC-HIVKLVLRNNA--LT--TLR-GIENLKSLEGLDISYNI-ISTFSELEFLASLPYLLNLWLEGNPLCCSRWYRAQVF 306 (937)
Q Consensus 234 ~l~-sL~~L~Ls~N~--Lt--~Lp-~L~~L~sL~~LdLS~N~-Ls~l~~l~~L~~L~sL~~L~Ls~NpLt~~~~~r~~~~ 306 (937)
.++ +|+.|+|++|. ++ .++ .+..+++|+.|+|++|. ++.. .+..+..+++|+.|+|++|.-.. ......+
T Consensus 192 ~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~-~~~~l~~l~~L~~L~l~~~~~~~--~~~~~~l 268 (336)
T 2ast_B 192 HVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKND-CFQEFFQLNYLQHLSLSRCYDII--PETLLEL 268 (336)
T ss_dssp HSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGG-GGGGGGGCTTCCEEECTTCTTCC--GGGGGGG
T ss_pred hcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHH-HHHHHhCCCCCCEeeCCCCCCCC--HHHHHHH
Confidence 778 99999999994 54 344 56789999999999999 6543 33678889999999999996211 1122346
Q ss_pred hhcCCCceeccCCccCChhh
Q 002315 307 SYFAHPAKLKVDGKEISTRE 326 (937)
Q Consensus 307 ~~l~~L~~L~LdgN~Is~~e 326 (937)
..++.|+.|+|.++ ++...
T Consensus 269 ~~~~~L~~L~l~~~-i~~~~ 287 (336)
T 2ast_B 269 GEIPTLKTLQVFGI-VPDGT 287 (336)
T ss_dssp GGCTTCCEEECTTS-SCTTC
T ss_pred hcCCCCCEEeccCc-cCHHH
Confidence 77999999999999 76544
No 109
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.59 E-value=8.8e-15 Score=152.12 Aligned_cols=155 Identities=19% Similarity=0.250 Sum_probs=134.4
Q ss_pred ccEEEccCCcCccchhhcCCCCCCcEEECCCCCCCCCc---CcCCCCCCCEEECCCCCCCCccc-ccccccccceecccC
Q 002315 170 LSFVSCSCNRLVIMDESLQLLPAVETLDLSRNKFAKVD---NLRKCVNLKHLDLGFNNLRSIAA-FSEVSCHIVKLVLRN 245 (937)
Q Consensus 170 L~~L~Ls~N~Ls~LP~sL~~L~~L~~LdLs~N~L~~l~---~L~~L~~L~~LdLS~N~Lt~L~~-l~~~l~sL~~L~Ls~ 245 (937)
.+.+++++|.++.+|..+ ...++.|+|++|.|+.++ .|..+++|+.|+|++|.|+.+++ .+..+++|+.|+|++
T Consensus 13 ~~~l~~s~n~l~~iP~~~--~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~ 90 (220)
T 2v70_A 13 GTTVDCSNQKLNKIPEHI--PQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTS 90 (220)
T ss_dssp TTEEECCSSCCSSCCSCC--CTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CCEeEeCCCCcccCccCC--CCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCC
Confidence 358999999999998765 346799999999999873 48899999999999999999876 566779999999999
Q ss_pred ccccccc--cCCCCCCCCEEEccCCCCCCCchhhhhcCCCCCCEEEecCCCCCCCcchhhhHhhhcCCCceeccCCccCC
Q 002315 246 NALTTLR--GIENLKSLEGLDISYNIISTFSELEFLASLPYLLNLWLEGNPLCCSRWYRAQVFSYFAHPAKLKVDGKEIS 323 (937)
Q Consensus 246 N~Lt~Lp--~L~~L~sL~~LdLS~N~Ls~l~~l~~L~~L~sL~~L~Ls~NpLt~~~~~r~~~~~~l~~L~~L~LdgN~Is 323 (937)
|.|+.++ .+..+++|++|+|++|.|+.+++ ..+..+++|+.|+|++|.|+... +..+..++.|+.++|.+|++.
T Consensus 91 N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-~~~~~l~~L~~L~L~~N~l~~~~---~~~~~~l~~L~~L~L~~N~l~ 166 (220)
T 2v70_A 91 NRLENVQHKMFKGLESLKTLMLRSNRITCVGN-DSFIGLSSVRLLSLYDNQITTVA---PGAFDTLHSLSTLNLLANPFN 166 (220)
T ss_dssp SCCCCCCGGGGTTCSSCCEEECTTSCCCCBCT-TSSTTCTTCSEEECTTSCCCCBC---TTTTTTCTTCCEEECCSCCEE
T ss_pred CccCccCHhHhcCCcCCCEEECCCCcCCeECH-hHcCCCccCCEEECCCCcCCEEC---HHHhcCCCCCCEEEecCcCCc
Confidence 9999985 58999999999999999999865 67889999999999999998653 355778899999999999999
Q ss_pred hhhHHHH
Q 002315 324 TRELWER 330 (937)
Q Consensus 324 ~~e~~~~ 330 (937)
+......
T Consensus 167 c~c~l~~ 173 (220)
T 2v70_A 167 CNCYLAW 173 (220)
T ss_dssp CSGGGHH
T ss_pred CCCchHH
Confidence 8775443
No 110
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.59 E-value=1.2e-14 Score=151.93 Aligned_cols=151 Identities=22% Similarity=0.249 Sum_probs=133.2
Q ss_pred CccEEEccCCcCccchhhcCCCCCCcEEECCCCCCCCCc--CcCCCCCCCEEECCCCCCCCcccc-cccccccceecccC
Q 002315 169 RLSFVSCSCNRLVIMDESLQLLPAVETLDLSRNKFAKVD--NLRKCVNLKHLDLGFNNLRSIAAF-SEVSCHIVKLVLRN 245 (937)
Q Consensus 169 ~L~~L~Ls~N~Ls~LP~sL~~L~~L~~LdLs~N~L~~l~--~L~~L~~L~~LdLS~N~Lt~L~~l-~~~l~sL~~L~Ls~ 245 (937)
..+.++++++.+..+|..+. ++|+.|+|++|.|+.+. .|..+++|+.|+|++|.|+.++.. +..+++|+.|+|++
T Consensus 20 s~~~v~c~~~~l~~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~ 97 (229)
T 3e6j_A 20 SGTTVDCRSKRHASVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGT 97 (229)
T ss_dssp ETTEEECTTSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred eCCEeEccCCCcCccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCC
Confidence 35789999999999997654 89999999999999973 688999999999999999998864 45779999999999
Q ss_pred ccccccc--cCCCCCCCCEEEccCCCCCCCchhhhhcCCCCCCEEEecCCCCCCCcchhhhHhhhcCCCceeccCCccCC
Q 002315 246 NALTTLR--GIENLKSLEGLDISYNIISTFSELEFLASLPYLLNLWLEGNPLCCSRWYRAQVFSYFAHPAKLKVDGKEIS 323 (937)
Q Consensus 246 N~Lt~Lp--~L~~L~sL~~LdLS~N~Ls~l~~l~~L~~L~sL~~L~Ls~NpLt~~~~~r~~~~~~l~~L~~L~LdgN~Is 323 (937)
|+|+.++ .+..+++|+.|+|++|.|+.+| ..+..+++|+.|+|++|.|...+ ...+..++.|+.++|.+|++.
T Consensus 98 N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~lp--~~~~~l~~L~~L~L~~N~l~~~~---~~~~~~l~~L~~L~l~~N~~~ 172 (229)
T 3e6j_A 98 NQLTVLPSAVFDRLVHLKELFMCCNKLTELP--RGIERLTHLTHLALDQNQLKSIP---HGAFDRLSSLTHAYLFGNPWD 172 (229)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCCSCC--TTGGGCTTCSEEECCSSCCCCCC---TTTTTTCTTCCEEECTTSCBC
T ss_pred CcCCccChhHhCcchhhCeEeccCCcccccC--cccccCCCCCEEECCCCcCCccC---HHHHhCCCCCCEEEeeCCCcc
Confidence 9999986 4789999999999999999987 56789999999999999998655 345778899999999999999
Q ss_pred hhh
Q 002315 324 TRE 326 (937)
Q Consensus 324 ~~e 326 (937)
+..
T Consensus 173 c~c 175 (229)
T 3e6j_A 173 CEC 175 (229)
T ss_dssp TTB
T ss_pred CCc
Confidence 764
No 111
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.58 E-value=2.2e-17 Score=195.73 Aligned_cols=200 Identities=17% Similarity=0.096 Sum_probs=155.5
Q ss_pred cCCCCCcEEEccCCCCCCCCCCCCCCCCCCcEEEeeCCC-------------CCccchhhHhhhhhhhhhh-hccCCCcc
Q 002315 84 KLLTSLKVVSALPPPARDPTPLSLLPFCRLKVLELRGCD-------------LSTSAAKGLLELRHTLEKI-ICHNSTNA 149 (937)
Q Consensus 84 ~~L~~Lk~LdLs~N~Is~~iP~sLs~L~~L~~LdLS~N~-------------Ls~~lp~~L~~L~~Ll~Ll-L~~N~L~~ 149 (937)
..+++|+.|+|++|.+. .+|..++.+++|+.|++++|. +.+..|..+..+++|..+. +..|.+..
T Consensus 346 ~~~~~L~~L~Ls~n~L~-~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~~~ 424 (567)
T 1dce_A 346 ATDEQLFRCELSVEKST-VLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDD 424 (567)
T ss_dssp STTTTSSSCCCCHHHHH-HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHHH
T ss_pred ccCccceeccCChhhHH-hhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcccch
Confidence 34566666666666664 446666666666666665553 5567788888888888887 66665555
Q ss_pred cchhcc--cchhcccCCCCCCCccEEEccCCcCccchhhcCCCCCCcEEECCCCCCCCCc-CcCCCCCCCEEECCCCCCC
Q 002315 150 LRHVFA--SRIVEIKDSPQWNRLSFVSCSCNRLVIMDESLQLLPAVETLDLSRNKFAKVD-NLRKCVNLKHLDLGFNNLR 226 (937)
Q Consensus 150 L~~l~~--~~i~~l~~l~~l~~L~~L~Ls~N~Ls~LP~sL~~L~~L~~LdLs~N~L~~l~-~L~~L~~L~~LdLS~N~Lt 226 (937)
++.... +.+..++. ..|+.|+|++|.|+.+|. +..+++|+.|+|++|.|+.+| .|..+++|+.|+|++|.|+
T Consensus 425 L~~l~l~~n~i~~l~~----~~L~~L~Ls~n~l~~lp~-~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~ 499 (567)
T 1dce_A 425 LRSKFLLENSVLKMEY----ADVRVLHLAHKDLTVLCH-LEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALE 499 (567)
T ss_dssp HHHHHHHHHHHHHHHH----TTCSEEECTTSCCSSCCC-GGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCC
T ss_pred hhhhhhhcccccccCc----cCceEEEecCCCCCCCcC-ccccccCcEeecCcccccccchhhhcCCCCCEEECCCCCCC
Confidence 554322 12333221 258999999999999987 999999999999999999986 7999999999999999999
Q ss_pred CcccccccccccceecccCcccccc--c-cCCCCCCCCEEEccCCCCCCCchh--hhhcCCCCCCEEEe
Q 002315 227 SIAAFSEVSCHIVKLVLRNNALTTL--R-GIENLKSLEGLDISYNIISTFSEL--EFLASLPYLLNLWL 290 (937)
Q Consensus 227 ~L~~l~~~l~sL~~L~Ls~N~Lt~L--p-~L~~L~sL~~LdLS~N~Ls~l~~l--~~L~~L~sL~~L~L 290 (937)
++| .+..+++|+.|+|++|.|+.+ | .+..+++|+.|+|++|.|+++++. ..+..+|+|+.|++
T Consensus 500 ~lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~l 567 (567)
T 1dce_A 500 NVD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSILT 567 (567)
T ss_dssp CCG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEEC
T ss_pred CCc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCccCC
Confidence 988 556679999999999999997 5 789999999999999999987642 23445899999875
No 112
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.58 E-value=1.8e-15 Score=167.65 Aligned_cols=235 Identities=14% Similarity=0.107 Sum_probs=176.7
Q ss_pred cEEEecCCCccchHhhhhhcccchhccCCCCCcccccccccCCCCCcchHHHH-HhcCCCCCcEEEccCCCCCCCCC-CC
Q 002315 29 IVLKLNPAGLHYVQSRLEALRELERLLAGAPLDYLRAYVSDLGDHRALEQLRR-ILKLLTSLKVVSALPPPARDPTP-LS 106 (937)
Q Consensus 29 ~~L~L~~~~L~~Lp~~L~~L~~Le~L~~g~~L~~L~l~vLdLs~n~~le~Lp~-~L~~L~~Lk~LdLs~N~Is~~iP-~s 106 (937)
+++.....+|..||..+. .. +..++|++|+ +..+|. .|.++++|+.|+|++|.+.+.+| ..
T Consensus 12 ~~v~C~~~~Lt~iP~~l~--~~--------------l~~L~Ls~N~-i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~ 74 (350)
T 4ay9_X 12 RVFLCQESKVTEIPSDLP--RN--------------AIELRFVLTK-LRVIQKGAFSGFGDLEKIEISQNDVLEVIEADV 74 (350)
T ss_dssp TEEEEESTTCCSCCTTCC--TT--------------CSEEEEESCC-CSEECTTSSTTCTTCCEEEEECCTTCCEECTTS
T ss_pred CEEEecCCCCCccCcCcC--CC--------------CCEEEccCCc-CCCcCHHHHcCCCCCCEEECcCCCCCCccChhH
Confidence 356667777888876542 11 2235566665 445654 68999999999999999877555 57
Q ss_pred CCCCCCCcE-EEeeCCCCCccchhhHhhhhhhhhhhhccCCCcccchhcccchhcccCCCCCCCccEEEccC-CcCccch
Q 002315 107 LLPFCRLKV-LELRGCDLSTSAAKGLLELRHTLEKIICHNSTNALRHVFASRIVEIKDSPQWNRLSFVSCSC-NRLVIMD 184 (937)
Q Consensus 107 Ls~L~~L~~-LdLS~N~Ls~~lp~~L~~L~~Ll~LlL~~N~L~~L~~l~~~~i~~l~~l~~l~~L~~L~Ls~-N~Ls~LP 184 (937)
|.++++|.. +.+..|+|+...|..|..+++|..+.+.+|.+..++...+. ...++..|++.+ +.+..+|
T Consensus 75 f~~L~~l~~~l~~~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~---------~~~~l~~l~l~~~~~i~~l~ 145 (350)
T 4ay9_X 75 FSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKI---------HSLQKVLLDIQDNINIHTIE 145 (350)
T ss_dssp BCSCTTCCEEEEEEETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTC---------CBSSCEEEEEESCTTCCEEC
T ss_pred hhcchhhhhhhcccCCcccccCchhhhhccccccccccccccccCCchhhc---------ccchhhhhhhcccccccccc
Confidence 889988775 67778999998888999999999999999988776643221 334677888865 6788877
Q ss_pred h-hcCCCC-CCcEEECCCCCCCCCc-CcCCCCCCCEEECC-CCCCCCccc-ccccccccceecccCccccccccCCCCCC
Q 002315 185 E-SLQLLP-AVETLDLSRNKFAKVD-NLRKCVNLKHLDLG-FNNLRSIAA-FSEVSCHIVKLVLRNNALTTLRGIENLKS 259 (937)
Q Consensus 185 ~-sL~~L~-~L~~LdLs~N~L~~l~-~L~~L~~L~~LdLS-~N~Lt~L~~-l~~~l~sL~~L~Ls~N~Lt~Lp~L~~L~s 259 (937)
. .|..+. .|+.|+|++|+|+.++ ......+|+.|+++ +|.++.++. .+..+++|+.|+|++|+|+.+|. ..+.+
T Consensus 146 ~~~f~~~~~~l~~L~L~~N~i~~i~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~-~~~~~ 224 (350)
T 4ay9_X 146 RNSFVGLSFESVILWLNKNGIQEIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPS-YGLEN 224 (350)
T ss_dssp TTSSTTSBSSCEEEECCSSCCCEECTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCCS-SSCTT
T ss_pred ccchhhcchhhhhhccccccccCCChhhccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCccCh-hhhcc
Confidence 6 455654 6899999999999885 45566789999997 478999986 45677999999999999999973 33566
Q ss_pred CCEEEccC-CCCCCCchhhhhcCCCCCCEEEecCC
Q 002315 260 LEGLDISY-NIISTFSELEFLASLPYLLNLWLEGN 293 (937)
Q Consensus 260 L~~LdLS~-N~Ls~l~~l~~L~~L~sL~~L~Ls~N 293 (937)
|+.|.+.+ +.++.+|. +..+++|+.+++.++
T Consensus 225 L~~L~~l~~~~l~~lP~---l~~l~~L~~l~l~~~ 256 (350)
T 4ay9_X 225 LKKLRARSTYNLKKLPT---LEKLVALMEASLTYP 256 (350)
T ss_dssp CCEEECTTCTTCCCCCC---TTTCCSCCEEECSCH
T ss_pred chHhhhccCCCcCcCCC---chhCcChhhCcCCCC
Confidence 77776544 45677764 678899999999643
No 113
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.56 E-value=1.5e-14 Score=147.89 Aligned_cols=131 Identities=23% Similarity=0.369 Sum_probs=104.8
Q ss_pred CCccEEEccCCcCccchh-hcCCCCCCcEEECCCCCCCCCc--CcCCCCCCCEEECCCCCCCCcccc-cccccccceecc
Q 002315 168 NRLSFVSCSCNRLVIMDE-SLQLLPAVETLDLSRNKFAKVD--NLRKCVNLKHLDLGFNNLRSIAAF-SEVSCHIVKLVL 243 (937)
Q Consensus 168 ~~L~~L~Ls~N~Ls~LP~-sL~~L~~L~~LdLs~N~L~~l~--~L~~L~~L~~LdLS~N~Lt~L~~l-~~~l~sL~~L~L 243 (937)
++|++|++++|.|+.++. .|..+++|++|+|++|.|+.++ .|..+++|++|+|++|.|+.++.. +..+++|+.|+|
T Consensus 28 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 107 (208)
T 2o6s_A 28 AQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELAL 107 (208)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEEc
Confidence 468888888888887765 4678888888888888888875 367888888888888888887753 356688888888
Q ss_pred cCccccccc--cCCCCCCCCEEEccCCCCCCCchhhhhcCCCCCCEEEecCCCCCCCc
Q 002315 244 RNNALTTLR--GIENLKSLEGLDISYNIISTFSELEFLASLPYLLNLWLEGNPLCCSR 299 (937)
Q Consensus 244 s~N~Lt~Lp--~L~~L~sL~~LdLS~N~Ls~l~~l~~L~~L~sL~~L~Ls~NpLt~~~ 299 (937)
++|.|+.++ .+..+++|+.|+|++|.|+.++. ..+..+++|+.|+|++|++.+.+
T Consensus 108 ~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~-~~~~~l~~L~~L~l~~N~~~~~~ 164 (208)
T 2o6s_A 108 NTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPD-GVFDRLTSLQYIWLHDNPWDCTC 164 (208)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCT-TTTTTCTTCCEEECCSCCBCCCT
T ss_pred CCCcCcccCHhHhccCCcCCEEECCCCccceeCH-HHhccCCCccEEEecCCCeecCC
Confidence 888888875 37788888888888888888764 55778888888888888887654
No 114
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.55 E-value=1.5e-14 Score=147.75 Aligned_cols=147 Identities=18% Similarity=0.154 Sum_probs=73.0
Q ss_pred CCCcEEEccCCCCCCCCCCCCCCCCCCcEEEeeCCCCCccchhhHhhhhhhhhhhhccCCCcccchhcccchhcccCCCC
Q 002315 87 TSLKVVSALPPPARDPTPLSLLPFCRLKVLELRGCDLSTSAAKGLLELRHTLEKIICHNSTNALRHVFASRIVEIKDSPQ 166 (937)
Q Consensus 87 ~~Lk~LdLs~N~Is~~iP~sLs~L~~L~~LdLS~N~Ls~~lp~~L~~L~~Ll~LlL~~N~L~~L~~l~~~~i~~l~~l~~ 166 (937)
++|++|+|++|.+....+..|..+++|++|+|++|.++...+..|. .
T Consensus 28 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~---------------------------------~ 74 (208)
T 2o6s_A 28 AQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFN---------------------------------K 74 (208)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTT---------------------------------T
T ss_pred CCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcC---------------------------------C
Confidence 4566666666666655555556666666666666666543222222 2
Q ss_pred CCCccEEEccCCcCccchh-hcCCCCCCcEEECCCCCCCCCc--CcCCCCCCCEEECCCCCCCCcccc-cccccccceec
Q 002315 167 WNRLSFVSCSCNRLVIMDE-SLQLLPAVETLDLSRNKFAKVD--NLRKCVNLKHLDLGFNNLRSIAAF-SEVSCHIVKLV 242 (937)
Q Consensus 167 l~~L~~L~Ls~N~Ls~LP~-sL~~L~~L~~LdLs~N~L~~l~--~L~~L~~L~~LdLS~N~Lt~L~~l-~~~l~sL~~L~ 242 (937)
+++|++|++++|.|+.+|. .+..+++|++|+|++|.|+.++ .+..+++|+.|+|++|.|+.++.. +..+++|+.|+
T Consensus 75 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~ 154 (208)
T 2o6s_A 75 LTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIW 154 (208)
T ss_dssp CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEE
T ss_pred CCCcCEEECCCCcCCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEE
Confidence 2345555555555554443 2445555555555555555443 244555555555555555544432 22334455555
Q ss_pred ccCccccccccCCCCCCCCEEEccCCCCC
Q 002315 243 LRNNALTTLRGIENLKSLEGLDISYNIIS 271 (937)
Q Consensus 243 Ls~N~Lt~Lp~L~~L~sL~~LdLS~N~Ls 271 (937)
|++|.+. ..+++|+.|+++.|.++
T Consensus 155 l~~N~~~-----~~~~~l~~L~~~~n~~~ 178 (208)
T 2o6s_A 155 LHDNPWD-----CTCPGIRYLSEWINKHS 178 (208)
T ss_dssp CCSCCBC-----CCTTTTHHHHHHHHHCT
T ss_pred ecCCCee-----cCCCCHHHHHHHHHhCC
Confidence 5544332 22334444444444444
No 115
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.54 E-value=1.5e-16 Score=162.08 Aligned_cols=162 Identities=31% Similarity=0.410 Sum_probs=140.0
Q ss_pred CccEEEccCC--cCccchhhcCCCCCCcEEECCCCCCCCCcCcCCCCCCCEEECCCCCCCCcccccccccccceecccCc
Q 002315 169 RLSFVSCSCN--RLVIMDESLQLLPAVETLDLSRNKFAKVDNLRKCVNLKHLDLGFNNLRSIAAFSEVSCHIVKLVLRNN 246 (937)
Q Consensus 169 ~L~~L~Ls~N--~Ls~LP~sL~~L~~L~~LdLs~N~L~~l~~L~~L~~L~~LdLS~N~Lt~L~~l~~~l~sL~~L~Ls~N 246 (937)
.|+.+.+.++ .++.+|..+..+++|++|+|++|.|+.++.+..+++|+.|+|++|.|+.++.....+++|+.|+|++|
T Consensus 24 ~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~l~~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L~~N 103 (198)
T 1ds9_A 24 EAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEKISSLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYN 103 (198)
T ss_dssp TCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESCCCCHHHHTTCCEEEEEEEEECSCSSHHHHHHHCSEEEEEEE
T ss_pred chheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCccccccccCCCCCEEECCCCCcccccchhhcCCcCCEEECcCC
Confidence 4666666655 67788889999999999999999999999888999999999999999999887777789999999999
Q ss_pred cccccccCCCCCCCCEEEccCCCCCCCchhhhhcCCCCCCEEEecCCCCCCC-------cchhhhHhhhcCCCceeccCC
Q 002315 247 ALTTLRGIENLKSLEGLDISYNIISTFSELEFLASLPYLLNLWLEGNPLCCS-------RWYRAQVFSYFAHPAKLKVDG 319 (937)
Q Consensus 247 ~Lt~Lp~L~~L~sL~~LdLS~N~Ls~l~~l~~L~~L~sL~~L~Ls~NpLt~~-------~~~r~~~~~~l~~L~~L~Ldg 319 (937)
.|+.++.+..+++|+.|+|++|.|+.++.+..+..+++|+.|++++|++.+. ..++...+..++.|+.+ |+
T Consensus 104 ~l~~l~~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~L--d~ 181 (198)
T 1ds9_A 104 QIASLSGIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKL--DG 181 (198)
T ss_dssp ECCCHHHHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEE--CC
T ss_pred cCCcCCccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEE--CC
Confidence 9999988889999999999999999987666789999999999999999765 34455567778888765 69
Q ss_pred ccCChhhHHHHHH
Q 002315 320 KEISTRELWERQL 332 (937)
Q Consensus 320 N~Is~~e~~~~~~ 332 (937)
++++..++..+..
T Consensus 182 ~~i~~~e~~~a~~ 194 (198)
T 1ds9_A 182 MPVDVDEREQANV 194 (198)
T ss_dssp GGGTTTTTTHHHH
T ss_pred cccCHHHHHHHHh
Confidence 9999888777643
No 116
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.52 E-value=2e-15 Score=176.92 Aligned_cols=157 Identities=15% Similarity=0.076 Sum_probs=101.2
Q ss_pred CCCccEEEcc-----------CCcCc--cchhhcCCCCCCcEEECCCCCCCCC--cCcCC-CCCCCEEECC----CCCCC
Q 002315 167 WNRLSFVSCS-----------CNRLV--IMDESLQLLPAVETLDLSRNKFAKV--DNLRK-CVNLKHLDLG----FNNLR 226 (937)
Q Consensus 167 l~~L~~L~Ls-----------~N~Ls--~LP~sL~~L~~L~~LdLs~N~L~~l--~~L~~-L~~L~~LdLS----~N~Lt 226 (937)
+++|+.|+++ .|.++ .++..+..+++|++|+++.|.++.. ..+.. +++|+.|+|+ .|.++
T Consensus 341 ~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~ 420 (592)
T 3ogk_B 341 CKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERIT 420 (592)
T ss_dssp CTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCS
T ss_pred CCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCcccc
Confidence 4567777777 34555 2333344577777777777777652 23333 6778888885 56676
Q ss_pred Ccc------cccccccccceecccCc--cccc--cccC-CCCCCCCEEEccCCCCCCCchhhhhcCCCCCCEEEecCCCC
Q 002315 227 SIA------AFSEVSCHIVKLVLRNN--ALTT--LRGI-ENLKSLEGLDISYNIISTFSELEFLASLPYLLNLWLEGNPL 295 (937)
Q Consensus 227 ~L~------~l~~~l~sL~~L~Ls~N--~Lt~--Lp~L-~~L~sL~~LdLS~N~Ls~l~~l~~L~~L~sL~~L~Ls~NpL 295 (937)
..| .....+++|+.|+|+.| .++. +..+ ..+++|+.|+|++|.+++......+..+++|+.|+|++|++
T Consensus 421 ~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l 500 (592)
T 3ogk_B 421 DLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCF 500 (592)
T ss_dssp SCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCC
T ss_pred CchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCC
Confidence 542 23344678888888643 2544 2222 34778888888888887643334557788899999998887
Q ss_pred CCCcchhhhHhhhcCCCceeccCCccCChh
Q 002315 296 CCSRWYRAQVFSYFAHPAKLKVDGKEISTR 325 (937)
Q Consensus 296 t~~~~~r~~~~~~l~~L~~L~LdgN~Is~~ 325 (937)
+... ....+..++.|+.|+|.+|+++..
T Consensus 501 ~~~~--~~~~~~~l~~L~~L~ls~n~it~~ 528 (592)
T 3ogk_B 501 SERA--IAAAVTKLPSLRYLWVQGYRASMT 528 (592)
T ss_dssp BHHH--HHHHHHHCSSCCEEEEESCBCCTT
T ss_pred cHHH--HHHHHHhcCccCeeECcCCcCCHH
Confidence 4221 123345678888888888888754
No 117
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.50 E-value=3.3e-14 Score=140.40 Aligned_cols=133 Identities=19% Similarity=0.163 Sum_probs=113.0
Q ss_pred CCCccEEEccCCcCc--cchhhcCCCCCCcEEECCCCCCCCCcCcCCCCCCCEEECCCCCCCC-cccccccccccceecc
Q 002315 167 WNRLSFVSCSCNRLV--IMDESLQLLPAVETLDLSRNKFAKVDNLRKCVNLKHLDLGFNNLRS-IAAFSEVSCHIVKLVL 243 (937)
Q Consensus 167 l~~L~~L~Ls~N~Ls--~LP~sL~~L~~L~~LdLs~N~L~~l~~L~~L~~L~~LdLS~N~Lt~-L~~l~~~l~sL~~L~L 243 (937)
.++|+.|++++|.++ .+|..+..+++|+.|+|++|.|+.++.+..+++|++|+|++|.++. ++.....+++|+.|+|
T Consensus 23 ~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 102 (168)
T 2ell_A 23 PAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISVSNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNL 102 (168)
T ss_dssp TTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCCSSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEEC
T ss_pred cccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCChhhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEec
Confidence 468999999999998 8888888999999999999999988888999999999999999998 5555555789999999
Q ss_pred cCccccccc---cCCCCCCCCEEEccCCCCCCCchh--hhhcCCCCCCEEEecCCCCCCCc
Q 002315 244 RNNALTTLR---GIENLKSLEGLDISYNIISTFSEL--EFLASLPYLLNLWLEGNPLCCSR 299 (937)
Q Consensus 244 s~N~Lt~Lp---~L~~L~sL~~LdLS~N~Ls~l~~l--~~L~~L~sL~~L~Ls~NpLt~~~ 299 (937)
++|.|+.++ .+..+++|+.|+|++|.|+.++.. ..+..+++|+.|++++|++...+
T Consensus 103 s~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~ 163 (168)
T 2ell_A 103 SGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQEAP 163 (168)
T ss_dssp BSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSCBCC
T ss_pred cCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChhhcc
Confidence 999998863 678888999999999999887641 35788889999999998886543
No 118
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.49 E-value=9.7e-14 Score=141.63 Aligned_cols=128 Identities=27% Similarity=0.371 Sum_probs=109.6
Q ss_pred cEEEccCCcCccchhhcCCCCCCcEEECCCCCCCCCc-CcCCCCCCCEEECCCCCCCCccc-ccccccccceecccCccc
Q 002315 171 SFVSCSCNRLVIMDESLQLLPAVETLDLSRNKFAKVD-NLRKCVNLKHLDLGFNNLRSIAA-FSEVSCHIVKLVLRNNAL 248 (937)
Q Consensus 171 ~~L~Ls~N~Ls~LP~sL~~L~~L~~LdLs~N~L~~l~-~L~~L~~L~~LdLS~N~Lt~L~~-l~~~l~sL~~L~Ls~N~L 248 (937)
+.+++++|.|+.+|..+ .++|+.|+|++|.|+.++ .|..+++|+.|+|++|.|+.+++ .+..+++|+.|+|++|+|
T Consensus 13 ~~l~~~~~~l~~ip~~~--~~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l 90 (193)
T 2wfh_A 13 TVVRCSNKGLKVLPKGI--PRDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRL 90 (193)
T ss_dssp TEEECTTSCCSSCCSCC--CTTCCEEECCSSCCCSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred CEEEcCCCCCCcCCCCC--CCCCCEEECCCCcCchhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCcc
Confidence 57899999999888765 368999999999999875 78888999999999999998875 455678999999999999
Q ss_pred cccc--cCCCCCCCCEEEccCCCCCCCchhhhhcCCCCCCEEEecCCCCCCCcch
Q 002315 249 TTLR--GIENLKSLEGLDISYNIISTFSELEFLASLPYLLNLWLEGNPLCCSRWY 301 (937)
Q Consensus 249 t~Lp--~L~~L~sL~~LdLS~N~Ls~l~~l~~L~~L~sL~~L~Ls~NpLt~~~~~ 301 (937)
+.++ .+..+++|+.|+|++|.|+.++. ..+..+++|+.|+|++|+|.|.+..
T Consensus 91 ~~i~~~~f~~l~~L~~L~L~~N~l~~~~~-~~~~~l~~L~~L~L~~N~~~C~c~l 144 (193)
T 2wfh_A 91 RCIPPRTFDGLKSLRLLSLHGNDISVVPE-GAFNDLSALSHLAIGANPLYCDCNM 144 (193)
T ss_dssp CBCCTTTTTTCTTCCEEECCSSCCCBCCT-TTTTTCTTCCEEECCSSCEECSGGG
T ss_pred CEeCHHHhCCCCCCCEEECCCCCCCeeCh-hhhhcCccccEEEeCCCCeecCCcC
Confidence 9975 58899999999999999998875 5678899999999999999988743
No 119
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.49 E-value=3.6e-14 Score=141.81 Aligned_cols=135 Identities=22% Similarity=0.288 Sum_probs=88.2
Q ss_pred CCCCCcEEECCCCCCCCCcCcCCCC-CCCEEECCCCCCCCcccccccccccceecccCccccccc-c-CCCCCCCCEEEc
Q 002315 189 LLPAVETLDLSRNKFAKVDNLRKCV-NLKHLDLGFNNLRSIAAFSEVSCHIVKLVLRNNALTTLR-G-IENLKSLEGLDI 265 (937)
Q Consensus 189 ~L~~L~~LdLs~N~L~~l~~L~~L~-~L~~LdLS~N~Lt~L~~l~~~l~sL~~L~Ls~N~Lt~Lp-~-L~~L~sL~~LdL 265 (937)
.+.+|+.|++++|.++.++.+..+. +|+.|+|++|.|+.+ .....+++|+.|+|++|.|+.++ . +..+++|++|+|
T Consensus 17 ~~~~L~~L~l~~n~l~~i~~~~~~~~~L~~L~Ls~N~l~~~-~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 95 (176)
T 1a9n_A 17 NAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKL-DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELIL 95 (176)
T ss_dssp CTTSCEEEECTTSCCCSCCCGGGGTTCCSEEECCSSCCCEE-CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEEC
T ss_pred CcCCceEEEeeCCCCchhHHhhhcCCCCCEEECCCCCCCcc-cccccCCCCCEEECCCCcccccCcchhhcCCCCCEEEC
Confidence 3445555555555555554444443 555555555555554 22333455666666666666554 2 366778888888
Q ss_pred cCCCCCCCchhhhhcCCCCCCEEEecCCCCCCCcchhhhHhhhcCCCceeccCCccCCh
Q 002315 266 SYNIISTFSELEFLASLPYLLNLWLEGNPLCCSRWYRAQVFSYFAHPAKLKVDGKEIST 324 (937)
Q Consensus 266 S~N~Ls~l~~l~~L~~L~sL~~L~Ls~NpLt~~~~~r~~~~~~l~~L~~L~LdgN~Is~ 324 (937)
++|.|..++.+..+..+++|+.|+|++|+++..+.++...+..++.|+.+++.+|.+..
T Consensus 96 ~~N~i~~~~~~~~l~~l~~L~~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~n~~~~ 154 (176)
T 1a9n_A 96 TNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQKVKLKE 154 (176)
T ss_dssp CSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTEECCHHH
T ss_pred CCCcCCcchhhHhhhcCCCCCEEEecCCCCCCcHhHHHHHHHHCCccceeCCCcCCHHH
Confidence 88888877755567788888888888888887776666677788888888887777643
No 120
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.49 E-value=1e-13 Score=140.95 Aligned_cols=128 Identities=25% Similarity=0.314 Sum_probs=112.2
Q ss_pred ccEEEccCCcCccchhhcCCCCCCcEEECCCCCCCCCc---CcCCCCCCCEEECCCCCCCCcc-cccccccccceecccC
Q 002315 170 LSFVSCSCNRLVIMDESLQLLPAVETLDLSRNKFAKVD---NLRKCVNLKHLDLGFNNLRSIA-AFSEVSCHIVKLVLRN 245 (937)
Q Consensus 170 L~~L~Ls~N~Ls~LP~sL~~L~~L~~LdLs~N~L~~l~---~L~~L~~L~~LdLS~N~Lt~L~-~l~~~l~sL~~L~Ls~ 245 (937)
.+.|++++|.|+.+|..+.. +|+.|+|++|.|..++ .|..+++|++|+|++|.|+.+. ..+..+++|+.|+|++
T Consensus 10 ~~~l~~s~~~l~~ip~~~~~--~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~ 87 (192)
T 1w8a_A 10 GTTVDCTGRGLKEIPRDIPL--HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGE 87 (192)
T ss_dssp TTEEECTTSCCSSCCSCCCT--TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred CCEEEcCCCCcCcCccCCCC--CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCC
Confidence 36899999999999886543 8999999999999875 2889999999999999999885 4566779999999999
Q ss_pred ccccccc--cCCCCCCCCEEEccCCCCCCCchhhhhcCCCCCCEEEecCCCCCCCcc
Q 002315 246 NALTTLR--GIENLKSLEGLDISYNIISTFSELEFLASLPYLLNLWLEGNPLCCSRW 300 (937)
Q Consensus 246 N~Lt~Lp--~L~~L~sL~~LdLS~N~Ls~l~~l~~L~~L~sL~~L~Ls~NpLt~~~~ 300 (937)
|+|+.++ .+..+++|++|+|++|+|+.+++ ..+..+++|+.|+|++|+|.|.+.
T Consensus 88 N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~-~~~~~l~~L~~L~L~~N~l~c~c~ 143 (192)
T 1w8a_A 88 NKIKEISNKMFLGLHQLKTLNLYDNQISCVMP-GSFEHLNSLTSLNLASNPFNCNCH 143 (192)
T ss_dssp CCCCEECSSSSTTCTTCCEEECCSSCCCEECT-TSSTTCTTCCEEECTTCCBCCSGG
T ss_pred CcCCccCHHHhcCCCCCCEEECCCCcCCeeCH-HHhhcCCCCCEEEeCCCCccCcCc
Confidence 9999975 58899999999999999998754 668899999999999999998874
No 121
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.46 E-value=1.4e-14 Score=169.71 Aligned_cols=285 Identities=12% Similarity=0.104 Sum_probs=180.1
Q ss_pred cCCcEEEecCCCccchHhhhhhcccchhccCCCCCcc-------------cccccccCCCCCcchHHHHHhcCCCCCcEE
Q 002315 26 EGSIVLKLNPAGLHYVQSRLEALRELERLLAGAPLDY-------------LRAYVSDLGDHRALEQLRRILKLLTSLKVV 92 (937)
Q Consensus 26 ~~l~~L~L~~~~L~~Lp~~L~~L~~Le~L~~g~~L~~-------------L~l~vLdLs~n~~le~Lp~~L~~L~~Lk~L 92 (937)
.+++.|++..+.+..++..+..++.|+.+..+..... -.+..++++.+ ....+|..+..+++|+.|
T Consensus 220 ~~L~~L~L~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~-~~~~l~~~~~~~~~L~~L 298 (592)
T 3ogk_B 220 RSLVSVKVGDFEILELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYM-GPNEMPILFPFAAQIRKL 298 (592)
T ss_dssp TTCCEEECSSCBGGGGHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTC-CTTTGGGGGGGGGGCCEE
T ss_pred CCCcEEeccCccHHHHHHHHhhhhHHHhhcccccccccchHHHHHHhhccccccccCcccc-chhHHHHHHhhcCCCcEE
Confidence 4566677776666666666666666655544210000 01112233332 234466667778888888
Q ss_pred EccCCCCCCCCC-CCCCCCCCCcEEEeeCCCCCc-cchhhHhhhhhhhhhhhcc-----------CCCcccchhcccchh
Q 002315 93 SALPPPARDPTP-LSLLPFCRLKVLELRGCDLST-SAAKGLLELRHTLEKIICH-----------NSTNALRHVFASRIV 159 (937)
Q Consensus 93 dLs~N~Is~~iP-~sLs~L~~L~~LdLS~N~Ls~-~lp~~L~~L~~Ll~LlL~~-----------N~L~~L~~l~~~~i~ 159 (937)
+|++|.+++... ..+..+++|+.|+|+ +.+.. .++..+..+++|.++.+.+ |.+.... +.
T Consensus 299 ~Ls~~~l~~~~~~~~~~~~~~L~~L~L~-~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~------~~ 371 (592)
T 3ogk_B 299 DLLYALLETEDHCTLIQKCPNLEVLETR-NVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRG------LI 371 (592)
T ss_dssp EETTCCCCHHHHHHHHTTCTTCCEEEEE-GGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHH------HH
T ss_pred ecCCCcCCHHHHHHHHHhCcCCCEEecc-CccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHH------HH
Confidence 888877654322 235677888888888 44433 3333345566777777762 2222110 00
Q ss_pred cccCCCCCCCccEEEccCCcCc-cchhhcCC-CCCCcEEECC----CCCCCCCc-------CcCCCCCCCEEECCCCC--
Q 002315 160 EIKDSPQWNRLSFVSCSCNRLV-IMDESLQL-LPAVETLDLS----RNKFAKVD-------NLRKCVNLKHLDLGFNN-- 224 (937)
Q Consensus 160 ~l~~l~~l~~L~~L~Ls~N~Ls-~LP~sL~~-L~~L~~LdLs----~N~L~~l~-------~L~~L~~L~~LdLS~N~-- 224 (937)
.+ ...+++|++|+++.|.++ ..+..+.. +++|+.|+++ .|.++..+ .+..+++|+.|+|++|.
T Consensus 372 ~l--~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~ 449 (592)
T 3ogk_B 372 AL--AQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGG 449 (592)
T ss_dssp HH--HHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGG
T ss_pred HH--HhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCC
Confidence 00 123678999999999988 33344544 8899999996 77887642 25568999999998643
Q ss_pred CCC--cccccccccccceecccCccccc--cc-cCCCCCCCCEEEccCCCCCCCchhhhhcCCCCCCEEEecCCCCCCCc
Q 002315 225 LRS--IAAFSEVSCHIVKLVLRNNALTT--LR-GIENLKSLEGLDISYNIISTFSELEFLASLPYLLNLWLEGNPLCCSR 299 (937)
Q Consensus 225 Lt~--L~~l~~~l~sL~~L~Ls~N~Lt~--Lp-~L~~L~sL~~LdLS~N~Ls~l~~l~~L~~L~sL~~L~Ls~NpLt~~~ 299 (937)
++. +......+++|+.|+|++|.++. ++ .+..+++|+.|+|++|.|+.......+..+++|+.|+|++|+++...
T Consensus 450 l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~it~~~ 529 (592)
T 3ogk_B 450 LTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRASMTG 529 (592)
T ss_dssp CCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHHHHHCSSCCEEEEESCBCCTTC
T ss_pred ccHHHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHHHHHhcCccCeeECcCCcCCHHH
Confidence 543 22233446899999999999986 34 45788999999999999865322234567899999999999988653
Q ss_pred chhhhHhhhcCCCceeccCCccC
Q 002315 300 WYRAQVFSYFAHPAKLKVDGKEI 322 (937)
Q Consensus 300 ~~r~~~~~~l~~L~~L~LdgN~I 322 (937)
. ......++.+....++.++.
T Consensus 530 ~--~~l~~~~p~l~~~~~~~~~~ 550 (592)
T 3ogk_B 530 Q--DLMQMARPYWNIELIPSRRV 550 (592)
T ss_dssp T--TGGGGCCTTEEEEEECCC--
T ss_pred H--HHHHHhCCCcEEEEecCccc
Confidence 1 12334567777777776644
No 122
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.46 E-value=3e-14 Score=173.55 Aligned_cols=178 Identities=15% Similarity=0.085 Sum_probs=97.7
Q ss_pred HHHHhcCCCCCcEEEccCCCCCCCCCCCCCCCCCCcEEEeeCCCCCccchhhHhhhhhhhhhhhccCCCcccchhcccch
Q 002315 79 LRRILKLLTSLKVVSALPPPARDPTPLSLLPFCRLKVLELRGCDLSTSAAKGLLELRHTLEKIICHNSTNALRHVFASRI 158 (937)
Q Consensus 79 Lp~~L~~L~~Lk~LdLs~N~Is~~iP~sLs~L~~L~~LdLS~N~Ls~~lp~~L~~L~~Ll~LlL~~N~L~~L~~l~~~~i 158 (937)
.+..+..+++|+.|+|++|.+. .+|..+..+++|++|+|++|.|+ .+|..|.
T Consensus 216 ~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~-------------------------- 267 (727)
T 4b8c_D 216 PKDSKYDDQLWHALDLSNLQIF-NISANIFKYDFLTRLYLNGNSLT-ELPAEIK-------------------------- 267 (727)
T ss_dssp ------CCCCCCEEECTTSCCS-CCCGGGGGCCSCSCCBCTTSCCS-CCCGGGG--------------------------
T ss_pred ChhhhccCCCCcEEECCCCCCC-CCChhhcCCCCCCEEEeeCCcCc-ccChhhh--------------------------
Confidence 3445555555555555555554 33444445555555555555555 3443333
Q ss_pred hcccCCCCCCCccEEEccCCcCccchhhcCCCCCCcEEECCCCCCCCCc-CcCCCCCCCEEECCCCCCCCccc-ccccc-
Q 002315 159 VEIKDSPQWNRLSFVSCSCNRLVIMDESLQLLPAVETLDLSRNKFAKVD-NLRKCVNLKHLDLGFNNLRSIAA-FSEVS- 235 (937)
Q Consensus 159 ~~l~~l~~l~~L~~L~Ls~N~Ls~LP~sL~~L~~L~~LdLs~N~L~~l~-~L~~L~~L~~LdLS~N~Lt~L~~-l~~~l- 235 (937)
.+++|++|+|++|.|+.+|..|..|++|++|+|++|.|+.+| .|..+++|+.|+|++|.|++.++ ....+
T Consensus 268 -------~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N~l~~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~ 340 (727)
T 4b8c_D 268 -------NLSNLRVLDLSHNRLTSLPAELGSCFQLKYFYFFDNMVTTLPWEFGNLCNLQFLGVEGNPLEKQFLKILTEKS 340 (727)
T ss_dssp -------GGTTCCEEECTTSCCSSCCSSGGGGTTCSEEECCSSCCCCCCSSTTSCTTCCCEECTTSCCCSHHHHHHHHHH
T ss_pred -------CCCCCCEEeCcCCcCCccChhhcCCCCCCEEECCCCCCCccChhhhcCCCccEEeCCCCccCCCChHHHhhcc
Confidence 245799999999999999999999999999999999999886 69999999999999999997654 22221
Q ss_pred cccceecccCccccccccCCCCCCCCEEEccCC--------CCCCCchhhhhcCCCCCCEEEecCCCCC
Q 002315 236 CHIVKLVLRNNALTTLRGIENLKSLEGLDISYN--------IISTFSELEFLASLPYLLNLWLEGNPLC 296 (937)
Q Consensus 236 ~sL~~L~Ls~N~Lt~Lp~L~~L~sL~~LdLS~N--------~Ls~l~~l~~L~~L~sL~~L~Ls~NpLt 296 (937)
..+..|+|++|.++... ...|..|+++.| .|..... ..+..+..+....++.|-++
T Consensus 341 ~~~~~l~l~~N~l~~~~----p~~l~~l~l~~n~~~~~~~~~l~~~~~-~~~~~l~~~~~~~ls~Nil~ 404 (727)
T 4b8c_D 341 VTGLIFYLRDNRPEIPL----PHERRFIEINTDGEPQREYDSLQQSTE-HLATDLAKRTFTVLSYNTLC 404 (727)
T ss_dssp HHHHHHHHHHCCCCCCC----CCC------------------------------------------CCC
T ss_pred hhhhHHhhccCcccCcC----ccccceeEeecccccccccCCcccccc-chhhcccccceeeeeccccc
Confidence 23345789999887631 245777888877 1222111 12233444555566666654
No 123
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.45 E-value=1e-13 Score=134.23 Aligned_cols=125 Identities=19% Similarity=0.227 Sum_probs=94.8
Q ss_pred CCCccEEEccCCcCc--cchhhcCCCCCCcEEECCCCCCCCCcCcCCCCCCCEEECCCCCCCC-cccccccccccceecc
Q 002315 167 WNRLSFVSCSCNRLV--IMDESLQLLPAVETLDLSRNKFAKVDNLRKCVNLKHLDLGFNNLRS-IAAFSEVSCHIVKLVL 243 (937)
Q Consensus 167 l~~L~~L~Ls~N~Ls--~LP~sL~~L~~L~~LdLs~N~L~~l~~L~~L~~L~~LdLS~N~Lt~-L~~l~~~l~sL~~L~L 243 (937)
.++|+.|++++|.++ .+|..+..+++|+.|++++|.++.++.+..+++|++|+|++|.|+. ++.....+++|+.|+|
T Consensus 16 ~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l 95 (149)
T 2je0_A 16 PSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSIANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNL 95 (149)
T ss_dssp GGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCCTTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEEC
T ss_pred CccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCchhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEEC
Confidence 357889999999998 8888888899999999999998888778888889999999988887 5555545677777777
Q ss_pred cCcccccc---ccCCCCCCCCEEEccCCCCCCCchh--hhhcCCCCCCEEEec
Q 002315 244 RNNALTTL---RGIENLKSLEGLDISYNIISTFSEL--EFLASLPYLLNLWLE 291 (937)
Q Consensus 244 s~N~Lt~L---p~L~~L~sL~~LdLS~N~Ls~l~~l--~~L~~L~sL~~L~Ls 291 (937)
++|.|+.+ ..+..+++|++|++++|.++.++.. ..+..+++|+.|+++
T Consensus 96 s~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 96 SGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp TTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred CCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence 77777764 3566677777777777777766531 245666677776654
No 124
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.44 E-value=1.4e-13 Score=135.78 Aligned_cols=136 Identities=28% Similarity=0.212 Sum_probs=119.2
Q ss_pred CCCCCCcEEECCCCCCC--CCc-CcCCCCCCCEEECCCCCCCCcccccccccccceecccCccccc-cc-cCCCCCCCCE
Q 002315 188 QLLPAVETLDLSRNKFA--KVD-NLRKCVNLKHLDLGFNNLRSIAAFSEVSCHIVKLVLRNNALTT-LR-GIENLKSLEG 262 (937)
Q Consensus 188 ~~L~~L~~LdLs~N~L~--~l~-~L~~L~~L~~LdLS~N~Lt~L~~l~~~l~sL~~L~Ls~N~Lt~-Lp-~L~~L~sL~~ 262 (937)
...++|+.|++++|.++ .++ .+..+++|+.|+|++|.|+.+ .....+++|+.|+|++|.|+. +| .+..+++|++
T Consensus 21 ~~~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~ 99 (168)
T 2ell_A 21 RTPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV-SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTH 99 (168)
T ss_dssp SCTTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC-SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCE
T ss_pred CCcccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh-hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCE
Confidence 44578999999999998 666 468899999999999999988 555667999999999999999 66 4456999999
Q ss_pred EEccCCCCCCCchhhhhcCCCCCCEEEecCCCCCCCcchhhhHhhhcCCCceeccCCccCCh
Q 002315 263 LDISYNIISTFSELEFLASLPYLLNLWLEGNPLCCSRWYRAQVFSYFAHPAKLKVDGKEIST 324 (937)
Q Consensus 263 LdLS~N~Ls~l~~l~~L~~L~sL~~L~Ls~NpLt~~~~~r~~~~~~l~~L~~L~LdgN~Is~ 324 (937)
|+|++|.|+.++.+..+..+++|+.|+|++|+++..+.++...+..++.|+.+++.+|.+..
T Consensus 100 L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~~ 161 (168)
T 2ell_A 100 LNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQE 161 (168)
T ss_dssp EECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSCB
T ss_pred EeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChhh
Confidence 99999999998766788999999999999999998877666788899999999999998763
No 125
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.43 E-value=1.3e-13 Score=137.73 Aligned_cols=131 Identities=21% Similarity=0.197 Sum_probs=114.2
Q ss_pred CCCCccEEEccCCcCccchhhcCCCCCCcEEECCCCCCCCCcCcCCCCCCCEEECCCCCCCCccccc-ccccccceeccc
Q 002315 166 QWNRLSFVSCSCNRLVIMDESLQLLPAVETLDLSRNKFAKVDNLRKCVNLKHLDLGFNNLRSIAAFS-EVSCHIVKLVLR 244 (937)
Q Consensus 166 ~l~~L~~L~Ls~N~Ls~LP~sL~~L~~L~~LdLs~N~L~~l~~L~~L~~L~~LdLS~N~Lt~L~~l~-~~l~sL~~L~Ls 244 (937)
.+.+|+.|++++|.|+.+|......++|+.|+|++|.|+.++.+..+++|++|+|++|.|+.+++.. ..+++|+.|+|+
T Consensus 17 ~~~~L~~L~l~~n~l~~i~~~~~~~~~L~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~ 96 (176)
T 1a9n_A 17 NAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKLDGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILT 96 (176)
T ss_dssp CTTSCEEEECTTSCCCSCCCGGGGTTCCSEEECCSSCCCEECCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEECC
T ss_pred CcCCceEEEeeCCCCchhHHhhhcCCCCCEEECCCCCCCcccccccCCCCCEEECCCCcccccCcchhhcCCCCCEEECC
Confidence 5678999999999999886544444599999999999999989999999999999999999988644 677999999999
Q ss_pred Cccccccc---cCCCCCCCCEEEccCCCCCCCchh--hhhcCCCCCCEEEecCCCCC
Q 002315 245 NNALTTLR---GIENLKSLEGLDISYNIISTFSEL--EFLASLPYLLNLWLEGNPLC 296 (937)
Q Consensus 245 ~N~Lt~Lp---~L~~L~sL~~LdLS~N~Ls~l~~l--~~L~~L~sL~~L~Ls~NpLt 296 (937)
+|.|+.++ .+..+++|+.|+|++|.+..++.. ..+..+++|+.|++++|++.
T Consensus 97 ~N~i~~~~~~~~l~~l~~L~~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~n~~~ 153 (176)
T 1a9n_A 97 NNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQKVKLK 153 (176)
T ss_dssp SCCCCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTEECCHH
T ss_pred CCcCCcchhhHhhhcCCCCCEEEecCCCCCCcHhHHHHHHHHCCccceeCCCcCCHH
Confidence 99999876 588899999999999999987641 14788999999999999874
No 126
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.42 E-value=1.1e-12 Score=130.59 Aligned_cols=127 Identities=23% Similarity=0.379 Sum_probs=109.7
Q ss_pred ccEEEccCCcCccchhhcCCCCCCcEEECCCCCCCCCc--CcCCCCCCCEEECCCCCCCCcccc-cccccccceecccCc
Q 002315 170 LSFVSCSCNRLVIMDESLQLLPAVETLDLSRNKFAKVD--NLRKCVNLKHLDLGFNNLRSIAAF-SEVSCHIVKLVLRNN 246 (937)
Q Consensus 170 L~~L~Ls~N~Ls~LP~sL~~L~~L~~LdLs~N~L~~l~--~L~~L~~L~~LdLS~N~Lt~L~~l-~~~l~sL~~L~Ls~N 246 (937)
.+.+++++|.++.+|..+ .++|+.|++++|.++.++ .|..+++|++|+|++|.|+.+++. +..+++|+.|+|++|
T Consensus 9 ~~~l~~~~~~l~~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N 86 (177)
T 2o6r_A 9 GTEIRCNSKGLTSVPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHEN 86 (177)
T ss_dssp TTEEECCSSCCSSCCTTC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CCEEEecCCCCccCCCCC--CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCC
Confidence 578999999999998654 478999999999999875 478899999999999999988764 456789999999999
Q ss_pred cccccc--cCCCCCCCCEEEccCCCCCCCchhhhhcCCCCCCEEEecCCCCCCCc
Q 002315 247 ALTTLR--GIENLKSLEGLDISYNIISTFSELEFLASLPYLLNLWLEGNPLCCSR 299 (937)
Q Consensus 247 ~Lt~Lp--~L~~L~sL~~LdLS~N~Ls~l~~l~~L~~L~sL~~L~Ls~NpLt~~~ 299 (937)
.|+.++ .+..+++|++|+|++|.|+.++. ..+..+++|+.|+|++|++.+.+
T Consensus 87 ~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~-~~~~~l~~L~~L~l~~N~~~~~~ 140 (177)
T 2o6r_A 87 KLQSLPNGVFDKLTQLKELALDTNQLKSVPD-GIFDRLTSLQKIWLHTNPWDCSC 140 (177)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCSCCCT-TTTTTCTTCCEEECCSSCBCCCH
T ss_pred CccccCHHHhhCCcccCEEECcCCcceEeCH-HHhcCCcccCEEEecCCCeeccC
Confidence 999976 47889999999999999998875 55678999999999999998875
No 127
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.39 E-value=4.6e-13 Score=129.54 Aligned_cols=129 Identities=26% Similarity=0.190 Sum_probs=111.9
Q ss_pred CCCCCcEEECCCCCCC--CCc-CcCCCCCCCEEECCCCCCCCcccccccccccceecccCccccc-cc-cCCCCCCCCEE
Q 002315 189 LLPAVETLDLSRNKFA--KVD-NLRKCVNLKHLDLGFNNLRSIAAFSEVSCHIVKLVLRNNALTT-LR-GIENLKSLEGL 263 (937)
Q Consensus 189 ~L~~L~~LdLs~N~L~--~l~-~L~~L~~L~~LdLS~N~Lt~L~~l~~~l~sL~~L~Ls~N~Lt~-Lp-~L~~L~sL~~L 263 (937)
..++|+.|++++|.++ .++ .+..+++|+.|+|++|.|+.+ .....+++|+.|+|++|.|+. +| .+..+++|++|
T Consensus 15 ~~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L 93 (149)
T 2je0_A 15 TPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI-ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHL 93 (149)
T ss_dssp CGGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC-TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEE
T ss_pred CCccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc-hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEE
Confidence 4578999999999998 565 568999999999999999988 555567899999999999999 66 45569999999
Q ss_pred EccCCCCCCCchhhhhcCCCCCCEEEecCCCCCCCcchhhhHhhhcCCCceeccC
Q 002315 264 DISYNIISTFSELEFLASLPYLLNLWLEGNPLCCSRWYRAQVFSYFAHPAKLKVD 318 (937)
Q Consensus 264 dLS~N~Ls~l~~l~~L~~L~sL~~L~Ls~NpLt~~~~~r~~~~~~l~~L~~L~Ld 318 (937)
+|++|.|+.++.+..+..+++|+.|++++|+++..+.++...+..++.|+.+++.
T Consensus 94 ~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 94 NLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp ECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred ECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence 9999999997655778999999999999999988776666778889999998875
No 128
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.39 E-value=8.8e-14 Score=162.76 Aligned_cols=206 Identities=15% Similarity=0.062 Sum_probs=123.7
Q ss_pred CCCCCcEEEeeCCCCCccchh-hHhhhhhhhhhhhccCCCcccchhcccchhcccCCCCCCCccEEEcc---------CC
Q 002315 109 PFCRLKVLELRGCDLSTSAAK-GLLELRHTLEKIICHNSTNALRHVFASRIVEIKDSPQWNRLSFVSCS---------CN 178 (937)
Q Consensus 109 ~L~~L~~LdLS~N~Ls~~lp~-~L~~L~~Ll~LlL~~N~L~~L~~l~~~~i~~l~~l~~l~~L~~L~Ls---------~N 178 (937)
.+++|+.|+|++|.++...+. .+..+++|.++.+.+| +. .. .+..+. ..+++|+.|++. .+
T Consensus 287 ~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~-~~---~~---~l~~l~--~~~~~L~~L~L~~~~~~g~~~~~ 357 (594)
T 2p1m_B 287 VCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY-IE---DA---GLEVLA--STCKDLRELRVFPSEPFVMEPNV 357 (594)
T ss_dssp HHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG-GH---HH---HHHHHH--HHCTTCCEEEEECSCTTCSSCSS
T ss_pred hhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc-cC---HH---HHHHHH--HhCCCCCEEEEecCcccccccCC
Confidence 346666666666665543222 2334555555555544 11 00 000000 125577777773 34
Q ss_pred cCcc--chhhcCCCCCCcEEECCCCCCCCC--cCcC-CCCCCCEEECC--C----CCCCCcc------ccccccccccee
Q 002315 179 RLVI--MDESLQLLPAVETLDLSRNKFAKV--DNLR-KCVNLKHLDLG--F----NNLRSIA------AFSEVSCHIVKL 241 (937)
Q Consensus 179 ~Ls~--LP~sL~~L~~L~~LdLs~N~L~~l--~~L~-~L~~L~~LdLS--~----N~Lt~L~------~l~~~l~sL~~L 241 (937)
.++. +......+++|+.|.+..|.++.. ..+. .+++|+.|+|+ + |.++..+ .....+++|+.|
T Consensus 358 ~l~~~~l~~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L 437 (594)
T 2p1m_B 358 ALTEQGLVSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRL 437 (594)
T ss_dssp CCCHHHHHHHHHHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEE
T ss_pred CCCHHHHHHHHHhchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEE
Confidence 4541 212223467888887777777652 2333 47888899888 4 5666432 223456789999
Q ss_pred cccCccccc--cccCCC-CCCCCEEEccCCCCCCCchhhhhcCCCCCCEEEecCCCCCCCcchhhhHhhhcCCCceeccC
Q 002315 242 VLRNNALTT--LRGIEN-LKSLEGLDISYNIISTFSELEFLASLPYLLNLWLEGNPLCCSRWYRAQVFSYFAHPAKLKVD 318 (937)
Q Consensus 242 ~Ls~N~Lt~--Lp~L~~-L~sL~~LdLS~N~Ls~l~~l~~L~~L~sL~~L~Ls~NpLt~~~~~r~~~~~~l~~L~~L~Ld 318 (937)
+|++ .++. ++.+.. +++|+.|+|++|.+++.........+++|+.|+|++|+++... .......++.|+.|+|.
T Consensus 438 ~L~~-~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~--~~~~~~~l~~L~~L~l~ 514 (594)
T 2p1m_B 438 SLSG-LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKA--LLANASKLETMRSLWMS 514 (594)
T ss_dssp ECCS-SCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHH--HHHTGGGGGGSSEEEEE
T ss_pred eecC-cccHHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHH--HHHHHHhCCCCCEEeee
Confidence 9977 5555 234443 7889999999999876432222266899999999999984221 11234557889999999
Q ss_pred CccCChhh
Q 002315 319 GKEISTRE 326 (937)
Q Consensus 319 gN~Is~~e 326 (937)
+|+++...
T Consensus 515 ~~~~~~~~ 522 (594)
T 2p1m_B 515 SCSVSFGA 522 (594)
T ss_dssp SSCCBHHH
T ss_pred CCCCCHHH
Confidence 99996544
No 129
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.37 E-value=3.7e-12 Score=129.91 Aligned_cols=131 Identities=18% Similarity=0.180 Sum_probs=114.0
Q ss_pred cEEECCCCCCCCCcCcCCCCCCCEEECCCCCCCCcccccccccccceecccCccccccc--cCCCCCCCCEEEccCCCCC
Q 002315 194 ETLDLSRNKFAKVDNLRKCVNLKHLDLGFNNLRSIAAFSEVSCHIVKLVLRNNALTTLR--GIENLKSLEGLDISYNIIS 271 (937)
Q Consensus 194 ~~LdLs~N~L~~l~~L~~L~~L~~LdLS~N~Lt~L~~l~~~l~sL~~L~Ls~N~Lt~Lp--~L~~L~sL~~LdLS~N~Ls 271 (937)
+.+++++|.|+.+|.- -.++|+.|+|++|.|+.++..+..+++|+.|+|++|.|+.++ .|..+++|+.|+|++|.|+
T Consensus 13 ~~l~~~~~~l~~ip~~-~~~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~ 91 (193)
T 2wfh_A 13 TVVRCSNKGLKVLPKG-IPRDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLR 91 (193)
T ss_dssp TEEECTTSCCSSCCSC-CCTTCCEEECCSSCCCSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC
T ss_pred CEEEcCCCCCCcCCCC-CCCCCCEEECCCCcCchhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccC
Confidence 6899999999998731 236899999999999999877777899999999999999985 5899999999999999999
Q ss_pred CCchhhhhcCCCCCCEEEecCCCCCCCcchhhhHhhhcCCCceeccCCccCChhhHHH
Q 002315 272 TFSELEFLASLPYLLNLWLEGNPLCCSRWYRAQVFSYFAHPAKLKVDGKEISTRELWE 329 (937)
Q Consensus 272 ~l~~l~~L~~L~sL~~L~Ls~NpLt~~~~~r~~~~~~l~~L~~L~LdgN~Is~~e~~~ 329 (937)
.+++ ..+..+++|+.|+|++|.|+..+ ...|..++.|+.++|++|++.|.....
T Consensus 92 ~i~~-~~f~~l~~L~~L~L~~N~l~~~~---~~~~~~l~~L~~L~L~~N~~~C~c~l~ 145 (193)
T 2wfh_A 92 CIPP-RTFDGLKSLRLLSLHGNDISVVP---EGAFNDLSALSHLAIGANPLYCDCNMQ 145 (193)
T ss_dssp BCCT-TTTTTCTTCCEEECCSSCCCBCC---TTTTTTCTTCCEEECCSSCEECSGGGH
T ss_pred EeCH-HHhCCCCCCCEEECCCCCCCeeC---hhhhhcCccccEEEeCCCCeecCCcCH
Confidence 9875 67889999999999999998554 345777899999999999998876543
No 130
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.35 E-value=3.7e-13 Score=163.95 Aligned_cols=132 Identities=20% Similarity=0.170 Sum_probs=97.8
Q ss_pred CCCCccEEEccCCcCccchhhcCCCCCCcEEECCCCCCCCCc-CcCCCCCCCEEECCCCCCCCcccccccccccceeccc
Q 002315 166 QWNRLSFVSCSCNRLVIMDESLQLLPAVETLDLSRNKFAKVD-NLRKCVNLKHLDLGFNNLRSIAAFSEVSCHIVKLVLR 244 (937)
Q Consensus 166 ~l~~L~~L~Ls~N~Ls~LP~sL~~L~~L~~LdLs~N~L~~l~-~L~~L~~L~~LdLS~N~Lt~L~~l~~~l~sL~~L~Ls 244 (937)
.++.|+.|+|++|.|..+|..+..+++|++|+|++|.|+.++ .|..|++|++|+|++|.|+.+|..+..+++|+.|+|+
T Consensus 222 ~l~~L~~L~Ls~n~l~~l~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~ 301 (727)
T 4b8c_D 222 DDQLWHALDLSNLQIFNISANIFKYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLTSLPAELGSCFQLKYFYFF 301 (727)
T ss_dssp CCCCCCEEECTTSCCSCCCGGGGGCCSCSCCBCTTSCCSCCCGGGGGGTTCCEEECTTSCCSSCCSSGGGGTTCSEEECC
T ss_pred cCCCCcEEECCCCCCCCCChhhcCCCCCCEEEeeCCcCcccChhhhCCCCCCEEeCcCCcCCccChhhcCCCCCCEEECC
Confidence 456788888888888888877778888888888888888775 5778888888888888888877766777888888888
Q ss_pred Cccccccc-cCCCCCCCCEEEccCCCCCCCchhhhhcCCC-CCCEEEecCCCCCCC
Q 002315 245 NNALTTLR-GIENLKSLEGLDISYNIISTFSELEFLASLP-YLLNLWLEGNPLCCS 298 (937)
Q Consensus 245 ~N~Lt~Lp-~L~~L~sL~~LdLS~N~Ls~l~~l~~L~~L~-sL~~L~Ls~NpLt~~ 298 (937)
+|.|+.+| .|..+++|+.|+|++|.|++.++ ..+..+. .+..|+|++|.++..
T Consensus 302 ~N~l~~lp~~~~~l~~L~~L~L~~N~l~~~~p-~~~~~~~~~~~~l~l~~N~l~~~ 356 (727)
T 4b8c_D 302 DNMVTTLPWEFGNLCNLQFLGVEGNPLEKQFL-KILTEKSVTGLIFYLRDNRPEIP 356 (727)
T ss_dssp SSCCCCCCSSTTSCTTCCCEECTTSCCCSHHH-HHHHHHHHHHHHHHHHHCCCCCC
T ss_pred CCCCCccChhhhcCCCccEEeCCCCccCCCCh-HHHhhcchhhhHHhhccCcccCc
Confidence 88888876 67888888888888888876543 3332221 122366777877643
No 131
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.32 E-value=9.9e-12 Score=126.22 Aligned_cols=130 Identities=22% Similarity=0.270 Sum_probs=112.2
Q ss_pred cEEECCCCCCCCCcC-cCCCCCCCEEECCCCCCCCcccc--cccccccceecccCcccccc-c-cCCCCCCCCEEEccCC
Q 002315 194 ETLDLSRNKFAKVDN-LRKCVNLKHLDLGFNNLRSIAAF--SEVSCHIVKLVLRNNALTTL-R-GIENLKSLEGLDISYN 268 (937)
Q Consensus 194 ~~LdLs~N~L~~l~~-L~~L~~L~~LdLS~N~Lt~L~~l--~~~l~sL~~L~Ls~N~Lt~L-p-~L~~L~sL~~LdLS~N 268 (937)
+.|++++|.++.+|. +. .+|+.|+|++|.|+.+++. +..+++|+.|+|++|.|+.+ + .+..+++|+.|+|++|
T Consensus 11 ~~l~~s~~~l~~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N 88 (192)
T 1w8a_A 11 TTVDCTGRGLKEIPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGEN 88 (192)
T ss_dssp TEEECTTSCCSSCCSCCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSC
T ss_pred CEEEcCCCCcCcCccCCC--CCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCC
Confidence 789999999999874 33 3899999999999998763 66789999999999999997 3 7899999999999999
Q ss_pred CCCCCchhhhhcCCCCCCEEEecCCCCCCCcchhhhHhhhcCCCceeccCCccCChhhHHH
Q 002315 269 IISTFSELEFLASLPYLLNLWLEGNPLCCSRWYRAQVFSYFAHPAKLKVDGKEISTRELWE 329 (937)
Q Consensus 269 ~Ls~l~~l~~L~~L~sL~~L~Ls~NpLt~~~~~r~~~~~~l~~L~~L~LdgN~Is~~e~~~ 329 (937)
+|+.++. ..+..+++|+.|+|++|.++... +..+..++.|+.++|++|++.+.....
T Consensus 89 ~l~~~~~-~~~~~l~~L~~L~L~~N~l~~~~---~~~~~~l~~L~~L~L~~N~l~c~c~l~ 145 (192)
T 1w8a_A 89 KIKEISN-KMFLGLHQLKTLNLYDNQISCVM---PGSFEHLNSLTSLNLASNPFNCNCHLA 145 (192)
T ss_dssp CCCEECS-SSSTTCTTCCEEECCSSCCCEEC---TTSSTTCTTCCEEECTTCCBCCSGGGH
T ss_pred cCCccCH-HHhcCCCCCCEEECCCCcCCeeC---HHHhhcCCCCCEEEeCCCCccCcCcch
Confidence 9999875 56889999999999999998543 345677899999999999999876543
No 132
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.30 E-value=1.1e-14 Score=148.29 Aligned_cols=61 Identities=26% Similarity=0.322 Sum_probs=29.6
Q ss_pred cccceecccCccccccc---cCCCCCCCCEEEccCCCCCCCch---------hhhhcCCCCCCEEEecCCCCCCC
Q 002315 236 CHIVKLVLRNNALTTLR---GIENLKSLEGLDISYNIISTFSE---------LEFLASLPYLLNLWLEGNPLCCS 298 (937)
Q Consensus 236 ~sL~~L~Ls~N~Lt~Lp---~L~~L~sL~~LdLS~N~Ls~l~~---------l~~L~~L~sL~~L~Ls~NpLt~~ 298 (937)
++|+.|+|++|.|+.++ .+..+++|++|++++|.+....+ ...+..+++|+.|+ +|+++..
T Consensus 115 ~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld--~~~i~~~ 187 (198)
T 1ds9_A 115 VNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD--GMPVDVD 187 (198)
T ss_dssp HHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC--CGGGTTT
T ss_pred CCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEEC--CcccCHH
Confidence 34444444444444322 24455555555555555543211 02255666777665 6666544
No 133
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.30 E-value=3.6e-13 Score=157.61 Aligned_cols=236 Identities=13% Similarity=0.101 Sum_probs=155.9
Q ss_pred hHHHHHhcCCCCCcEEEccCCCCCCCCC-CCCCCCCCCcEEEeeCCCCCccchhh-HhhhhhhhhhhhccC------CCc
Q 002315 77 EQLRRILKLLTSLKVVSALPPPARDPTP-LSLLPFCRLKVLELRGCDLSTSAAKG-LLELRHTLEKIICHN------STN 148 (937)
Q Consensus 77 e~Lp~~L~~L~~Lk~LdLs~N~Is~~iP-~sLs~L~~L~~LdLS~N~Ls~~lp~~-L~~L~~Ll~LlL~~N------~L~ 148 (937)
..++..+..+++|+.|+|++|.+++... ..+..+++|+.|+|++| ++...... ...+++|.++.+... ...
T Consensus 279 ~~l~~~~~~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~ 357 (594)
T 2p1m_B 279 AYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY-IEDAGLEVLASTCKDLRELRVFPSEPFVMEPNV 357 (594)
T ss_dssp GGGGGGHHHHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCTTCCEEEEECSCTTCSSCSS
T ss_pred hhHHHHHHhhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHhCCCCCEEEEecCcccccccCC
Confidence 3455555678999999999998764322 23568899999999998 54322222 334677777766321 111
Q ss_pred ccchhcccchhcccCCCCCCCccEEEccCCcCccc-hhhc-CCCCCCcEEECC--C----CCCCCCc-------CcCCCC
Q 002315 149 ALRHVFASRIVEIKDSPQWNRLSFVSCSCNRLVIM-DESL-QLLPAVETLDLS--R----NKFAKVD-------NLRKCV 213 (937)
Q Consensus 149 ~L~~l~~~~i~~l~~l~~l~~L~~L~Ls~N~Ls~L-P~sL-~~L~~L~~LdLs--~----N~L~~l~-------~L~~L~ 213 (937)
.+.... +..+. ..+++|+.|.+..|.++.. +..+ ..+++|+.|+|+ + |.++..+ .+..++
T Consensus 358 ~l~~~~---l~~l~--~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~ 432 (594)
T 2p1m_B 358 ALTEQG---LVSVS--MGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCK 432 (594)
T ss_dssp CCCHHH---HHHHH--HHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCT
T ss_pred CCCHHH---HHHHH--HhchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCC
Confidence 121111 11110 1357899999999998832 2333 358999999999 4 6676432 156778
Q ss_pred CCCEEECCCCCCCCc--ccccccccccceecccCcccccc--ccC-CCCCCCCEEEccCCCCCCCchhhhhcCCCCCCEE
Q 002315 214 NLKHLDLGFNNLRSI--AAFSEVSCHIVKLVLRNNALTTL--RGI-ENLKSLEGLDISYNIISTFSELEFLASLPYLLNL 288 (937)
Q Consensus 214 ~L~~LdLS~N~Lt~L--~~l~~~l~sL~~L~Ls~N~Lt~L--p~L-~~L~sL~~LdLS~N~Ls~l~~l~~L~~L~sL~~L 288 (937)
+|+.|+|++ .++.. ......+++|+.|+|++|.++.. ..+ ..+++|+.|+|++|.++.......+..+++|+.|
T Consensus 433 ~L~~L~L~~-~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L 511 (594)
T 2p1m_B 433 DLRRLSLSG-LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSL 511 (594)
T ss_dssp TCCEEECCS-SCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEE
T ss_pred CccEEeecC-cccHHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEE
Confidence 999999987 55532 22333468999999999999763 333 6689999999999999654332345568999999
Q ss_pred EecCCCCCCCcchhhhHhhhcCCCceeccCCcc
Q 002315 289 WLEGNPLCCSRWYRAQVFSYFAHPAKLKVDGKE 321 (937)
Q Consensus 289 ~Ls~NpLt~~~~~r~~~~~~l~~L~~L~LdgN~ 321 (937)
+|++|+++... .......++.++...+..+.
T Consensus 512 ~l~~~~~~~~~--~~~l~~~lp~l~i~~~~~~~ 542 (594)
T 2p1m_B 512 WMSSCSVSFGA--CKLLGQKMPKLNVEVIDERG 542 (594)
T ss_dssp EEESSCCBHHH--HHHHHHHCTTEEEEEECSSS
T ss_pred eeeCCCCCHHH--HHHHHHhCCCCEEEEecCCC
Confidence 99999994221 11223567778777766554
No 134
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.28 E-value=2.6e-12 Score=140.85 Aligned_cols=82 Identities=20% Similarity=0.205 Sum_probs=37.2
Q ss_pred CCCCCEEECCCCCCCCccc-ccccccccceecccCccccccc--cCCCCCCCC-EEEccCCCCCCCchhhhhcCCCCCCE
Q 002315 212 CVNLKHLDLGFNNLRSIAA-FSEVSCHIVKLVLRNNALTTLR--GIENLKSLE-GLDISYNIISTFSELEFLASLPYLLN 287 (937)
Q Consensus 212 L~~L~~LdLS~N~Lt~L~~-l~~~l~sL~~L~Ls~N~Lt~Lp--~L~~L~sL~-~LdLS~N~Ls~l~~l~~L~~L~sL~~ 287 (937)
+++|+.|+|++|.++.++. .+..+++|+.|+|.+| ++.++ +|..+++|+ .|+|.+ .++.++. ..|..+++|+.
T Consensus 225 ~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~-~aF~~c~~L~~ 301 (329)
T 3sb4_A 225 MPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEF-GAFMGCDNLRY 301 (329)
T ss_dssp CTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECT-TTTTTCTTEEE
T ss_pred cCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEch-hhhhCCccCCE
Confidence 3444444554444444443 2223344444544444 44442 444444554 455444 3444432 34444455555
Q ss_pred EEecCCCCC
Q 002315 288 LWLEGNPLC 296 (937)
Q Consensus 288 L~Ls~NpLt 296 (937)
|++.+|.+.
T Consensus 302 l~l~~n~i~ 310 (329)
T 3sb4_A 302 VLATGDKIT 310 (329)
T ss_dssp EEECSSCCC
T ss_pred EEeCCCccC
Confidence 555444444
No 135
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.23 E-value=8e-11 Score=117.20 Aligned_cols=130 Identities=18% Similarity=0.180 Sum_probs=111.1
Q ss_pred CcEEECCCCCCCCCcCcCCCCCCCEEECCCCCCCCcccc-cccccccceecccCccccccc--cCCCCCCCCEEEccCCC
Q 002315 193 VETLDLSRNKFAKVDNLRKCVNLKHLDLGFNNLRSIAAF-SEVSCHIVKLVLRNNALTTLR--GIENLKSLEGLDISYNI 269 (937)
Q Consensus 193 L~~LdLs~N~L~~l~~L~~L~~L~~LdLS~N~Lt~L~~l-~~~l~sL~~L~Ls~N~Lt~Lp--~L~~L~sL~~LdLS~N~ 269 (937)
.+.+++++|.++.++. .-.++|+.|+|++|.++.++.. +..+++|+.|+|++|.|+.++ .+..+++|+.|+|++|.
T Consensus 9 ~~~l~~~~~~l~~~p~-~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~ 87 (177)
T 2o6r_A 9 GTEIRCNSKGLTSVPT-GIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENK 87 (177)
T ss_dssp TTEEECCSSCCSSCCT-TCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred CCEEEecCCCCccCCC-CCCCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCC
Confidence 5789999999998872 2347999999999999998763 456799999999999999986 47899999999999999
Q ss_pred CCCCchhhhhcCCCCCCEEEecCCCCCCCcchhhhHhhhcCCCceeccCCccCChhhH
Q 002315 270 ISTFSELEFLASLPYLLNLWLEGNPLCCSRWYRAQVFSYFAHPAKLKVDGKEISTREL 327 (937)
Q Consensus 270 Ls~l~~l~~L~~L~sL~~L~Ls~NpLt~~~~~r~~~~~~l~~L~~L~LdgN~Is~~e~ 327 (937)
|+.++. ..+..+++|+.|+|++|.++..+ ...+..++.|+.++|.+|++.+...
T Consensus 88 l~~~~~-~~~~~l~~L~~L~l~~N~l~~~~---~~~~~~l~~L~~L~l~~N~~~~~~~ 141 (177)
T 2o6r_A 88 LQSLPN-GVFDKLTQLKELALDTNQLKSVP---DGIFDRLTSLQKIWLHTNPWDCSCP 141 (177)
T ss_dssp CCCCCT-TTTTTCTTCCEEECCSSCCSCCC---TTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred ccccCH-HHhhCCcccCEEECcCCcceEeC---HHHhcCCcccCEEEecCCCeeccCc
Confidence 999875 56788999999999999998654 3456678999999999999987653
No 136
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.19 E-value=7.2e-11 Score=117.79 Aligned_cols=104 Identities=25% Similarity=0.343 Sum_probs=66.6
Q ss_pred cEEECCCCCCCCCcC-cCCCCCCCEEECCCCCCCCccc-ccccccccceecccCccccccc--cCCCCCCCCEEEccCCC
Q 002315 194 ETLDLSRNKFAKVDN-LRKCVNLKHLDLGFNNLRSIAA-FSEVSCHIVKLVLRNNALTTLR--GIENLKSLEGLDISYNI 269 (937)
Q Consensus 194 ~~LdLs~N~L~~l~~-L~~L~~L~~LdLS~N~Lt~L~~-l~~~l~sL~~L~Ls~N~Lt~Lp--~L~~L~sL~~LdLS~N~ 269 (937)
+.|++++|.++.+|. + .++|+.|+|++|.|+.+++ .+..+++|+.|+|++|+|+.++ .+..+++|++|+|++|+
T Consensus 12 ~~l~~s~n~l~~ip~~~--~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~ 89 (170)
T 3g39_A 12 TTVDCSGKSLASVPTGI--PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQ 89 (170)
T ss_dssp TEEECTTSCCSSCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred CEEEeCCCCcCccCccC--CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCCc
Confidence 344444444444431 1 1445555555555555432 2334455555555556555554 35778889999999999
Q ss_pred CCCCchhhhhcCCCCCCEEEecCCCCCCCcc
Q 002315 270 ISTFSELEFLASLPYLLNLWLEGNPLCCSRW 300 (937)
Q Consensus 270 Ls~l~~l~~L~~L~sL~~L~Ls~NpLt~~~~ 300 (937)
|+.++. ..+..+++|+.|+|++|+|.|.+.
T Consensus 90 l~~~~~-~~~~~l~~L~~L~L~~N~~~c~c~ 119 (170)
T 3g39_A 90 LKSIPR-GAFDNLKSLTHIWLLNNPWDCACS 119 (170)
T ss_dssp CCCCCT-TTTTTCTTCCEEECCSSCBCTTBG
T ss_pred cCEeCH-HHhcCCCCCCEEEeCCCCCCCCch
Confidence 988874 567889999999999999998873
No 137
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.17 E-value=4.8e-11 Score=130.75 Aligned_cols=84 Identities=18% Similarity=0.188 Sum_probs=54.2
Q ss_pred ccccceecccCccccccc--cCCCCCCCCEEEccCCCCCCCchhhhhcCCCCCC-EEEecCCCCCCCcchhhhHhhhcCC
Q 002315 235 SCHIVKLVLRNNALTTLR--GIENLKSLEGLDISYNIISTFSELEFLASLPYLL-NLWLEGNPLCCSRWYRAQVFSYFAH 311 (937)
Q Consensus 235 l~sL~~L~Ls~N~Lt~Lp--~L~~L~sL~~LdLS~N~Ls~l~~l~~L~~L~sL~-~L~Ls~NpLt~~~~~r~~~~~~l~~ 311 (937)
+++|+.|+|++|+++.++ .|..+++|+.|+|.+| +..++. ..|..+++|+ .|.|.+ .+... ....|..++.
T Consensus 225 ~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~-~aF~~~~~L~~~l~l~~-~l~~I---~~~aF~~c~~ 298 (329)
T 3sb4_A 225 MPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQ-RVFSNCGRLAGTLELPA-SVTAI---EFGAFMGCDN 298 (329)
T ss_dssp CTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECT-TTTTTCTTCCEEEEECT-TCCEE---CTTTTTTCTT
T ss_pred cCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehH-HHhhCChhccEEEEEcc-cceEE---chhhhhCCcc
Confidence 456777777777777765 5677777777777766 666654 5566777777 777766 44322 2345666667
Q ss_pred CceeccCCccCCh
Q 002315 312 PAKLKVDGKEIST 324 (937)
Q Consensus 312 L~~L~LdgN~Is~ 324 (937)
|+.+.|++|.++.
T Consensus 299 L~~l~l~~n~i~~ 311 (329)
T 3sb4_A 299 LRYVLATGDKITT 311 (329)
T ss_dssp EEEEEECSSCCCE
T ss_pred CCEEEeCCCccCc
Confidence 7777776666653
No 138
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.15 E-value=1.4e-10 Score=116.38 Aligned_cols=87 Identities=21% Similarity=0.330 Sum_probs=59.2
Q ss_pred CCCCEEECCCCCCCCccc-ccccccccceecccCccccccc--cCCCCCCCCEEEccCCCCCCCchhhhhcCCCCCCEEE
Q 002315 213 VNLKHLDLGFNNLRSIAA-FSEVSCHIVKLVLRNNALTTLR--GIENLKSLEGLDISYNIISTFSELEFLASLPYLLNLW 289 (937)
Q Consensus 213 ~~L~~LdLS~N~Lt~L~~-l~~~l~sL~~L~Ls~N~Lt~Lp--~L~~L~sL~~LdLS~N~Ls~l~~l~~L~~L~sL~~L~ 289 (937)
++|+.|+|++|.|+.+++ .+..+++|+.|+|++|+|+.++ .+..+++|+.|+|++|+|+.++. ..+..+++|+.|+
T Consensus 33 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~l~~l~~-~~~~~l~~L~~L~ 111 (174)
T 2r9u_A 33 TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKSIPR-GAFDNLKSLTHIY 111 (174)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCT-TTTTTCTTCSEEE
T ss_pred CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCccceeCH-HHhccccCCCEEE
Confidence 444555555555554432 2334455555555555555554 35678889999999999988874 5578899999999
Q ss_pred ecCCCCCCCcc
Q 002315 290 LEGNPLCCSRW 300 (937)
Q Consensus 290 Ls~NpLt~~~~ 300 (937)
|++|+|.|.+.
T Consensus 112 L~~N~~~c~~~ 122 (174)
T 2r9u_A 112 LYNNPWDCECR 122 (174)
T ss_dssp CCSSCBCTTBG
T ss_pred eCCCCcccccc
Confidence 99999988863
No 139
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.09 E-value=3.4e-10 Score=112.87 Aligned_cols=104 Identities=24% Similarity=0.303 Sum_probs=92.4
Q ss_pred CccEEEccCCcCccchhhcCCCCCCcEEECCCCCCCCCc--CcCCCCCCCEEECCCCCCCCcccc-cccccccceecccC
Q 002315 169 RLSFVSCSCNRLVIMDESLQLLPAVETLDLSRNKFAKVD--NLRKCVNLKHLDLGFNNLRSIAAF-SEVSCHIVKLVLRN 245 (937)
Q Consensus 169 ~L~~L~Ls~N~Ls~LP~sL~~L~~L~~LdLs~N~L~~l~--~L~~L~~L~~LdLS~N~Lt~L~~l-~~~l~sL~~L~Ls~ 245 (937)
..+.|++++|.|+.+|..+ .++|+.|+|++|.|+.++ .|..+++|++|+|++|+|+.+++. +..+++|+.|+|++
T Consensus 10 ~~~~l~~s~n~l~~ip~~~--~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~ 87 (170)
T 3g39_A 10 SGTTVDCSGKSLASVPTGI--PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLND 87 (170)
T ss_dssp ETTEEECTTSCCSSCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCCEEEeCCCCcCccCccC--CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCC
Confidence 3578999999999999766 489999999999999984 589999999999999999998874 45779999999999
Q ss_pred ccccccc--cCCCCCCCCEEEccCCCCCCCc
Q 002315 246 NALTTLR--GIENLKSLEGLDISYNIISTFS 274 (937)
Q Consensus 246 N~Lt~Lp--~L~~L~sL~~LdLS~N~Ls~l~ 274 (937)
|+|+.++ .+..+++|+.|+|++|.+....
T Consensus 88 N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c 118 (170)
T 3g39_A 88 NQLKSIPRGAFDNLKSLTHIWLLNNPWDCAC 118 (170)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCBCTTB
T ss_pred CccCEeCHHHhcCCCCCCEEEeCCCCCCCCc
Confidence 9999986 5889999999999999998654
No 140
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.09 E-value=4.2e-10 Score=112.84 Aligned_cols=103 Identities=24% Similarity=0.322 Sum_probs=92.2
Q ss_pred ccEEEccCCcCccchhhcCCCCCCcEEECCCCCCCCCc--CcCCCCCCCEEECCCCCCCCcccc-cccccccceecccCc
Q 002315 170 LSFVSCSCNRLVIMDESLQLLPAVETLDLSRNKFAKVD--NLRKCVNLKHLDLGFNNLRSIAAF-SEVSCHIVKLVLRNN 246 (937)
Q Consensus 170 L~~L~Ls~N~Ls~LP~sL~~L~~L~~LdLs~N~L~~l~--~L~~L~~L~~LdLS~N~Lt~L~~l-~~~l~sL~~L~Ls~N 246 (937)
-+.+++++|.++.+|..+. ++|+.|+|++|.|+.++ .|..+++|+.|+|++|.|+.++.. +..+++|+.|+|++|
T Consensus 14 ~~~l~~~~n~l~~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N 91 (174)
T 2r9u_A 14 QTLVNCQNIRLASVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDN 91 (174)
T ss_dssp SSEEECCSSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CcEEEeCCCCCCccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCC
Confidence 3689999999999998664 89999999999999974 689999999999999999999874 457799999999999
Q ss_pred cccccc--cCCCCCCCCEEEccCCCCCCCc
Q 002315 247 ALTTLR--GIENLKSLEGLDISYNIISTFS 274 (937)
Q Consensus 247 ~Lt~Lp--~L~~L~sL~~LdLS~N~Ls~l~ 274 (937)
+|+.++ .+..+++|++|+|++|.+...+
T Consensus 92 ~l~~l~~~~~~~l~~L~~L~L~~N~~~c~~ 121 (174)
T 2r9u_A 92 HLKSIPRGAFDNLKSLTHIYLYNNPWDCEC 121 (174)
T ss_dssp CCCCCCTTTTTTCTTCSEEECCSSCBCTTB
T ss_pred ccceeCHHHhccccCCCEEEeCCCCccccc
Confidence 999986 4889999999999999998765
No 141
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.05 E-value=5.3e-11 Score=133.92 Aligned_cols=155 Identities=19% Similarity=0.192 Sum_probs=98.2
Q ss_pred CCccEEEccCCcCcc--chhhcCCCCCCcEEECCCCCCCCCc--C----c-CCCCCCCEEECCCCCCCCc-----ccccc
Q 002315 168 NRLSFVSCSCNRLVI--MDESLQLLPAVETLDLSRNKFAKVD--N----L-RKCVNLKHLDLGFNNLRSI-----AAFSE 233 (937)
Q Consensus 168 ~~L~~L~Ls~N~Ls~--LP~sL~~L~~L~~LdLs~N~L~~l~--~----L-~~L~~L~~LdLS~N~Lt~L-----~~l~~ 233 (937)
+.|+.|+|++|.|+. +......+++|+.|+|++|.|+... . + ...++|+.|+|++|.|+.. .....
T Consensus 101 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~ 180 (372)
T 3un9_A 101 HALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLA 180 (372)
T ss_dssp SCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHH
T ss_pred CCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHHhcCCccceeeCCCCCCChHHHHHHHHHHh
Confidence 468888888888762 2222233557888888888886531 2 2 3457788888888887642 22223
Q ss_pred cccccceecccCcccccc------ccCCCCCCCCEEEccCCCCCCCchh---hhhcCCCCCCEEEecCCCCCCCcchhhh
Q 002315 234 VSCHIVKLVLRNNALTTL------RGIENLKSLEGLDISYNIISTFSEL---EFLASLPYLLNLWLEGNPLCCSRWYRAQ 304 (937)
Q Consensus 234 ~l~sL~~L~Ls~N~Lt~L------p~L~~L~sL~~LdLS~N~Ls~l~~l---~~L~~L~sL~~L~Ls~NpLt~~~~~r~~ 304 (937)
.+++|++|+|++|.|+.. ..+..+++|+.|+|++|.|+..... ..+...++|+.|+|++|+|+... ..
T Consensus 181 ~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~~~g---~~ 257 (372)
T 3un9_A 181 GNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELSSEG---RQ 257 (372)
T ss_dssp TCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCCHHH---HH
T ss_pred cCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCCHHH---HH
Confidence 457788888888888762 2566778899999999998864321 23456788999999999987442 22
Q ss_pred HhhhcCC-----Cceec--cCCccCChh
Q 002315 305 VFSYFAH-----PAKLK--VDGKEISTR 325 (937)
Q Consensus 305 ~~~~l~~-----L~~L~--LdgN~Is~~ 325 (937)
.+..+.. ++.+. ++++.++..
T Consensus 258 ~L~~~~~~~~~~L~~l~~ll~~~~~~~~ 285 (372)
T 3un9_A 258 VLRDLGGAAEGGARVVVSLTEGTAVSEY 285 (372)
T ss_dssp HHHHCC------CEEECCCC----CHHH
T ss_pred HHHHHhcCCCccchhhHhhhcCCccCHH
Confidence 2322211 55666 667776543
No 142
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.04 E-value=3.4e-10 Score=124.27 Aligned_cols=106 Identities=25% Similarity=0.355 Sum_probs=65.3
Q ss_pred EEEccCC-cCccchhhcCCCCCCcEEECCC-CCCCCCc--CcCCCCCCCEEECCCCCCCCcccccccccccceecccCcc
Q 002315 172 FVSCSCN-RLVIMDESLQLLPAVETLDLSR-NKFAKVD--NLRKCVNLKHLDLGFNNLRSIAAFSEVSCHIVKLVLRNNA 247 (937)
Q Consensus 172 ~L~Ls~N-~Ls~LP~sL~~L~~L~~LdLs~-N~L~~l~--~L~~L~~L~~LdLS~N~Lt~L~~l~~~l~sL~~L~Ls~N~ 247 (937)
.++++++ .|+.||. +..+++|+.|+|++ |.|..++ .|..|++|+.|+|++|.|+++++.
T Consensus 12 ~v~~~~~n~l~~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~---------------- 74 (347)
T 2ifg_A 12 GLRCTRDGALDSLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPD---------------- 74 (347)
T ss_dssp CEECCSSCCCTTTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTT----------------
T ss_pred EEEcCCCCCCCccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHH----------------
Confidence 3455555 5655655 55555555555553 5555543 344555555555555544443321
Q ss_pred ccccccCCCCCCCCEEEccCCCCCCCchhhhhcCCCCCCEEEecCCCCCCCcch
Q 002315 248 LTTLRGIENLKSLEGLDISYNIISTFSELEFLASLPYLLNLWLEGNPLCCSRWY 301 (937)
Q Consensus 248 Lt~Lp~L~~L~sL~~LdLS~N~Ls~l~~l~~L~~L~sL~~L~Ls~NpLt~~~~~ 301 (937)
.|..+++|+.|+|++|+|+.++. ..+..++ |+.|+|.+|+|.|.+.+
T Consensus 75 -----~~~~l~~L~~L~l~~N~l~~~~~-~~~~~~~-L~~l~l~~N~~~c~c~l 121 (347)
T 2ifg_A 75 -----AFHFTPRLSRLNLSFNALESLSW-KTVQGLS-LQELVLSGNPLHCSCAL 121 (347)
T ss_dssp -----GGGSCSCCCEEECCSSCCSCCCS-TTTCSCC-CCEEECCSSCCCCCGGG
T ss_pred -----HhcCCcCCCEEeCCCCccceeCH-HHcccCC-ceEEEeeCCCccCCCcc
Confidence 45667788888888888888764 4445554 99999999999988753
No 143
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.97 E-value=2.5e-09 Score=121.51 Aligned_cols=218 Identities=11% Similarity=0.113 Sum_probs=146.6
Q ss_pred HhcCCCCCcEEEccCCCCCCCCCCCCCCCCCCcEEEeeCCCCCccchhhHhhhhhhhhhhhccCCCcccchhcccchhcc
Q 002315 82 ILKLLTSLKVVSALPPPARDPTPLSLLPFCRLKVLELRGCDLSTSAAKGLLELRHTLEKIICHNSTNALRHVFASRIVEI 161 (937)
Q Consensus 82 ~L~~L~~Lk~LdLs~N~Is~~iP~sLs~L~~L~~LdLS~N~Ls~~lp~~L~~L~~Ll~LlL~~N~L~~L~~l~~~~i~~l 161 (937)
.|.+ .+|+.+.|. +.+..+.+.+|..+++|+.|+|.+|.++......|. ...+..+.+. +++..+....
T Consensus 153 aF~~-~~L~~i~lp-~~l~~I~~~aF~~c~~L~~l~l~~n~l~~I~~~aF~-~~~L~~l~lp-~~l~~I~~~a------- 221 (401)
T 4fdw_A 153 AFFN-STVQEIVFP-STLEQLKEDIFYYCYNLKKADLSKTKITKLPASTFV-YAGIEEVLLP-VTLKEIGSQA------- 221 (401)
T ss_dssp TTTT-CCCCEEECC-TTCCEECSSTTTTCTTCCEEECTTSCCSEECTTTTT-TCCCSEEECC-TTCCEECTTT-------
T ss_pred hcCC-CCceEEEeC-CCccEehHHHhhCcccCCeeecCCCcceEechhhEe-ecccCEEEeC-CchheehhhH-------
Confidence 4555 368888885 466666677888888888888888888775555554 3455544444 2244443322
Q ss_pred cCCCCCCCccEEEccCCcCccchh-hcCCCCCCcEEECCCCCCCCCc--CcCCCCCCCEEECCCCCCC-----Cccc-cc
Q 002315 162 KDSPQWNRLSFVSCSCNRLVIMDE-SLQLLPAVETLDLSRNKFAKVD--NLRKCVNLKHLDLGFNNLR-----SIAA-FS 232 (937)
Q Consensus 162 ~~l~~l~~L~~L~Ls~N~Ls~LP~-sL~~L~~L~~LdLs~N~L~~l~--~L~~L~~L~~LdLS~N~Lt-----~L~~-l~ 232 (937)
+..+++|+.+.+..| ++.|+. .|.. .+|+.+.|. +.++.++ .|..+++|+.|.+.+|.+. .++. .+
T Consensus 222 --F~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L~~i~lp-~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF 296 (401)
T 4fdw_A 222 --FLKTSQLKTIEIPEN-VSTIGQEAFRE-SGITTVKLP-NGVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCL 296 (401)
T ss_dssp --TTTCTTCCCEECCTT-CCEECTTTTTT-CCCSEEEEE-TTCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTT
T ss_pred --hhCCCCCCEEecCCC-ccCcccccccc-CCccEEEeC-CCccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHh
Confidence 235677888888764 666665 4544 788888884 4566653 7888888999988887765 3443 44
Q ss_pred ccccccceecccCccccccc--cCCCCCCCCEEEccCCCCCCCchhhhhcCCCCCCEEEecCCCCCCCcchhhhHhhhcC
Q 002315 233 EVSCHIVKLVLRNNALTTLR--GIENLKSLEGLDISYNIISTFSELEFLASLPYLLNLWLEGNPLCCSRWYRAQVFSYFA 310 (937)
Q Consensus 233 ~~l~sL~~L~Ls~N~Lt~Lp--~L~~L~sL~~LdLS~N~Ls~l~~l~~L~~L~sL~~L~Ls~NpLt~~~~~r~~~~~~l~ 310 (937)
..+++|+.+.|. +.++.++ .|..|++|+.|.|..| ++.++. .+|..+ +|+.|.+.+|.+.... ...|..++
T Consensus 297 ~~c~~L~~l~l~-~~i~~I~~~aF~~c~~L~~l~lp~~-l~~I~~-~aF~~~-~L~~l~l~~n~~~~l~---~~~F~~~~ 369 (401)
T 4fdw_A 297 EGCPKLARFEIP-ESIRILGQGLLGGNRKVTQLTIPAN-VTQINF-SAFNNT-GIKEVKVEGTTPPQVF---EKVWYGFP 369 (401)
T ss_dssp TTCTTCCEECCC-TTCCEECTTTTTTCCSCCEEEECTT-CCEECT-TSSSSS-CCCEEEECCSSCCBCC---CSSCCCSC
T ss_pred hCCccCCeEEeC-CceEEEhhhhhcCCCCccEEEECcc-ccEEcH-HhCCCC-CCCEEEEcCCCCcccc---cccccCCC
Confidence 567888888888 4577774 7888889999988554 666654 567778 8999999888765432 23344443
Q ss_pred -CCceeccCCccC
Q 002315 311 -HPAKLKVDGKEI 322 (937)
Q Consensus 311 -~L~~L~LdgN~I 322 (937)
.+..+++..+.+
T Consensus 370 ~~l~~l~vp~~~~ 382 (401)
T 4fdw_A 370 DDITVIRVPAESV 382 (401)
T ss_dssp TTCCEEEECGGGH
T ss_pred CCccEEEeCHHHH
Confidence 466777766554
No 144
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.96 E-value=5.1e-10 Score=122.89 Aligned_cols=86 Identities=22% Similarity=0.259 Sum_probs=67.2
Q ss_pred CCCCCCccEEEccC-CcCccchh-hcCCCCCCcEEECCCCCCCCCc--CcCCCCCCCEEECCCCCCCCcccccccccccc
Q 002315 164 SPQWNRLSFVSCSC-NRLVIMDE-SLQLLPAVETLDLSRNKFAKVD--NLRKCVNLKHLDLGFNNLRSIAAFSEVSCHIV 239 (937)
Q Consensus 164 l~~l~~L~~L~Ls~-N~Ls~LP~-sL~~L~~L~~LdLs~N~L~~l~--~L~~L~~L~~LdLS~N~Lt~L~~l~~~l~sL~ 239 (937)
+..+++|+.|+|++ |.|+.+|. .|..+++|+.|+|++|+|+.++ .|..|++|+.|+|++|.|+.+++.......|+
T Consensus 27 l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~L~ 106 (347)
T 2ifg_A 27 LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGLSLQ 106 (347)
T ss_dssp SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCSCCCSTTTCSCCCC
T ss_pred CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCccceeCHHHcccCCce
Confidence 34677899999996 99998874 7999999999999999999874 68999999999999999998875432211244
Q ss_pred eecccCcccc
Q 002315 240 KLVLRNNALT 249 (937)
Q Consensus 240 ~L~Ls~N~Lt 249 (937)
.|+|.+|.|.
T Consensus 107 ~l~l~~N~~~ 116 (347)
T 2ifg_A 107 ELVLSGNPLH 116 (347)
T ss_dssp EEECCSSCCC
T ss_pred EEEeeCCCcc
Confidence 4554444443
No 145
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.96 E-value=3.8e-09 Score=120.02 Aligned_cols=217 Identities=11% Similarity=0.134 Sum_probs=148.1
Q ss_pred HhcCCCCCcEEEccCCCCCCCCCCCCCCCCCCcEEEeeCCCCCccchhhHhhhhhhhhhhhccCCCcccchhcccchhcc
Q 002315 82 ILKLLTSLKVVSALPPPARDPTPLSLLPFCRLKVLELRGCDLSTSAAKGLLELRHTLEKIICHNSTNALRHVFASRIVEI 161 (937)
Q Consensus 82 ~L~~L~~Lk~LdLs~N~Is~~iP~sLs~L~~L~~LdLS~N~Ls~~lp~~L~~L~~Ll~LlL~~N~L~~L~~l~~~~i~~l 161 (937)
.|.++ +|+.+.|..+ ++.+...+|.+ .+|+.+.|.+ .+....+.+|..+.+|..+.+..|.+..++...+.
T Consensus 131 aF~~~-~L~~i~l~~~-i~~I~~~aF~~-~~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~l~~I~~~aF~----- 201 (401)
T 4fdw_A 131 AFRNS-QIAKVVLNEG-LKSIGDMAFFN-STVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKTKITKLPASTFV----- 201 (401)
T ss_dssp TTTTC-CCSEEECCTT-CCEECTTTTTT-CCCCEEECCT-TCCEECSSTTTTCTTCCEEECTTSCCSEECTTTTT-----
T ss_pred hcccC-CccEEEeCCC-ccEECHHhcCC-CCceEEEeCC-CccEehHHHhhCcccCCeeecCCCcceEechhhEe-----
Confidence 45554 6777777444 66666666766 4688888775 66666666777777777777777766666554332
Q ss_pred cCCCCCCCccEEEccCCcCccchh-hcCCCCCCcEEECCCCCCCCCc--CcCCCCCCCEEECCCCCCCCccc-ccccccc
Q 002315 162 KDSPQWNRLSFVSCSCNRLVIMDE-SLQLLPAVETLDLSRNKFAKVD--NLRKCVNLKHLDLGFNNLRSIAA-FSEVSCH 237 (937)
Q Consensus 162 ~~l~~l~~L~~L~Ls~N~Ls~LP~-sL~~L~~L~~LdLs~N~L~~l~--~L~~L~~L~~LdLS~N~Lt~L~~-l~~~l~s 237 (937)
+..|+.+.+..+ +..|+. .|..+++|+.|.|..| ++.++ +|.. .+|+.+.| .+.++.++. .+..+++
T Consensus 202 -----~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L~~i~l-p~~i~~I~~~aF~~c~~ 272 (401)
T 4fdw_A 202 -----YAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGITTVKL-PNGVTNIASRAFYYCPE 272 (401)
T ss_dssp -----TCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-CCCSEEEE-ETTCCEECTTTTTTCTT
T ss_pred -----ecccCEEEeCCc-hheehhhHhhCCCCCCEEecCCC-ccCcccccccc-CCccEEEe-CCCccEEChhHhhCCCC
Confidence 346777777643 666654 6777778888888764 55543 5555 67888887 345666654 4446778
Q ss_pred cceecccCcccc-----ccc--cCCCCCCCCEEEccCCCCCCCchhhhhcCCCCCCEEEecCCCCCCCcchhhhHhhhcC
Q 002315 238 IVKLVLRNNALT-----TLR--GIENLKSLEGLDISYNIISTFSELEFLASLPYLLNLWLEGNPLCCSRWYRAQVFSYFA 310 (937)
Q Consensus 238 L~~L~Ls~N~Lt-----~Lp--~L~~L~sL~~LdLS~N~Ls~l~~l~~L~~L~sL~~L~Ls~NpLt~~~~~r~~~~~~l~ 310 (937)
|+.+.+.+|.+. .++ .|..|++|+.+.|. +.++.++. ..|..+++|+.|.|..| ++. +....|..+
T Consensus 273 L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~-~~i~~I~~-~aF~~c~~L~~l~lp~~-l~~---I~~~aF~~~- 345 (401)
T 4fdw_A 273 LAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIP-ESIRILGQ-GLLGGNRKVTQLTIPAN-VTQ---INFSAFNNT- 345 (401)
T ss_dssp CCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCC-TTCCEECT-TTTTTCCSCCEEEECTT-CCE---ECTTSSSSS-
T ss_pred CCEEEeCCccccCCcccEECHHHhhCCccCCeEEeC-CceEEEhh-hhhcCCCCccEEEECcc-ccE---EcHHhCCCC-
Confidence 888888887765 343 78888888888888 45777765 66788888999988655 442 233556677
Q ss_pred CCceeccCCccCC
Q 002315 311 HPAKLKVDGKEIS 323 (937)
Q Consensus 311 ~L~~L~LdgN~Is 323 (937)
.|+.+.+.+|.+.
T Consensus 346 ~L~~l~l~~n~~~ 358 (401)
T 4fdw_A 346 GIKEVKVEGTTPP 358 (401)
T ss_dssp CCCEEEECCSSCC
T ss_pred CCCEEEEcCCCCc
Confidence 7888888888765
No 146
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.92 E-value=1.6e-10 Score=130.07 Aligned_cols=178 Identities=21% Similarity=0.205 Sum_probs=114.6
Q ss_pred CCCCcEEEccCCCCCCCCCCCCC-----CCCCCcEEEeeCCCCCccchhhHhhhhhhhhhhhccCCCcccchhcccchhc
Q 002315 86 LTSLKVVSALPPPARDPTPLSLL-----PFCRLKVLELRGCDLSTSAAKGLLELRHTLEKIICHNSTNALRHVFASRIVE 160 (937)
Q Consensus 86 L~~Lk~LdLs~N~Is~~iP~sLs-----~L~~L~~LdLS~N~Ls~~lp~~L~~L~~Ll~LlL~~N~L~~L~~l~~~~i~~ 160 (937)
+++|+.|+|++|.|+......|. ..++|+.|+|++|.|+......+...
T Consensus 71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~-------------------------- 124 (372)
T 3un9_A 71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPV-------------------------- 124 (372)
T ss_dssp HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHH--------------------------
T ss_pred HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHH--------------------------
Confidence 56799999999998754333332 23799999999999875333222210
Q ss_pred ccCCCCCCCccEEEccCCcCccc-----hhhc-CCCCCCcEEECCCCCCCCC------cCcCCCCCCCEEECCCCCCCCc
Q 002315 161 IKDSPQWNRLSFVSCSCNRLVIM-----DESL-QLLPAVETLDLSRNKFAKV------DNLRKCVNLKHLDLGFNNLRSI 228 (937)
Q Consensus 161 l~~l~~l~~L~~L~Ls~N~Ls~L-----P~sL-~~L~~L~~LdLs~N~L~~l------~~L~~L~~L~~LdLS~N~Lt~L 228 (937)
+++|+.|+|++|.|+.. ...+ ...++|++|+|++|.|+.. ..+..+++|++|+|++|.|+..
T Consensus 125 ------L~~L~~L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~ 198 (372)
T 3un9_A 125 ------FLRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDE 198 (372)
T ss_dssp ------HHTEEEEECCSSCCCHHHHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHH
T ss_pred ------HHhccHhhcCCCCCCHHHHHHHHHHHHhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcH
Confidence 12577888888887632 2223 3467788888888887652 2346678888888888887742
Q ss_pred -----ccccccccccceecccCcccccc------ccCCCCCCCCEEEccCCCCCCCchhhhhcCC---CC--CCEEE--e
Q 002315 229 -----AAFSEVSCHIVKLVLRNNALTTL------RGIENLKSLEGLDISYNIISTFSELEFLASL---PY--LLNLW--L 290 (937)
Q Consensus 229 -----~~l~~~l~sL~~L~Ls~N~Lt~L------p~L~~L~sL~~LdLS~N~Ls~l~~l~~L~~L---~s--L~~L~--L 290 (937)
.......++|+.|+|++|.|+.. ..+..+++|++|+|++|.|+.... ..+..+ .. |+.+. +
T Consensus 199 g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~~~g~-~~L~~~~~~~~~~L~~l~~ll 277 (372)
T 3un9_A 199 GLELLAAQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELSSEGR-QVLRDLGGAAEGGARVVVSLT 277 (372)
T ss_dssp HHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCCHHHH-HHHHHCC------CEEECCCC
T ss_pred HHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCCHHHH-HHHHHHhcCCCccchhhHhhh
Confidence 22233446888899998888763 245567889999999999986432 333322 21 66666 6
Q ss_pred cCCCCC
Q 002315 291 EGNPLC 296 (937)
Q Consensus 291 s~NpLt 296 (937)
.+|.+.
T Consensus 278 ~~~~~~ 283 (372)
T 3un9_A 278 EGTAVS 283 (372)
T ss_dssp ----CH
T ss_pred cCCccC
Confidence 666663
No 147
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.34 E-value=5.4e-07 Score=101.14 Aligned_cols=156 Identities=15% Similarity=0.149 Sum_probs=88.5
Q ss_pred HHHHHhcCCCCCcEEEccCCCCCCCCCCCCCCCCCCcEEEeeCCCCCccchhhHhhhhhhhhhhhccCCCcccchhcccc
Q 002315 78 QLRRILKLLTSLKVVSALPPPARDPTPLSLLPFCRLKVLELRGCDLSTSAAKGLLELRHTLEKIICHNSTNALRHVFASR 157 (937)
Q Consensus 78 ~Lp~~L~~L~~Lk~LdLs~N~Is~~iP~sLs~L~~L~~LdLS~N~Ls~~lp~~L~~L~~Ll~LlL~~N~L~~L~~l~~~~ 157 (937)
.+...+..+|+|+.|.|++|.-. .++. +. +++|+.|+|..|.++......+..
T Consensus 163 ~L~~ll~~~P~L~~L~L~g~~~l-~l~~-~~-~~~L~~L~L~~~~l~~~~l~~l~~------------------------ 215 (362)
T 2ra8_A 163 DLSPVLDAMPLLNNLKIKGTNNL-SIGK-KP-RPNLKSLEIISGGLPDSVVEDILG------------------------ 215 (362)
T ss_dssp BCHHHHHTCTTCCEEEEECCBTC-BCCS-CB-CTTCSEEEEECSBCCHHHHHHHHH------------------------
T ss_pred CHHHHHhcCCCCcEEEEeCCCCc-eecc-cc-CCCCcEEEEecCCCChHHHHHHHH------------------------
Confidence 46677888999999999887311 2233 43 899999999999987544433331
Q ss_pred hhcccCCCCCCCccEEEccC--Cc------Cccchhhc--CCCCCCcEEECCCCCCCCC--c---CcCCCCCCCEEECCC
Q 002315 158 IVEIKDSPQWNRLSFVSCSC--NR------LVIMDESL--QLLPAVETLDLSRNKFAKV--D---NLRKCVNLKHLDLGF 222 (937)
Q Consensus 158 i~~l~~l~~l~~L~~L~Ls~--N~------Ls~LP~sL--~~L~~L~~LdLs~N~L~~l--~---~L~~L~~L~~LdLS~ 222 (937)
..+++|+.|+|+. |. +..+...+ ..+++|+.|+|.+|.+... . ....+++|++|+|+.
T Consensus 216 -------~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~ 288 (362)
T 2ra8_A 216 -------SDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISA 288 (362)
T ss_dssp -------SBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCS
T ss_pred -------ccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCC
Confidence 0123455555432 11 11222222 2356677777766666531 1 112456777777777
Q ss_pred CCCCCc-----ccccccccccceecccCcccccc--ccCCC-CCCCCEEEccCCC
Q 002315 223 NNLRSI-----AAFSEVSCHIVKLVLRNNALTTL--RGIEN-LKSLEGLDISYNI 269 (937)
Q Consensus 223 N~Lt~L-----~~l~~~l~sL~~L~Ls~N~Lt~L--p~L~~-L~sL~~LdLS~N~ 269 (937)
|.|+.. ......+++|+.|+|++|.|+.. ..+.. + ...++++.++
T Consensus 289 n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~~~~~l~~al--g~~~~~~~~~ 341 (362)
T 2ra8_A 289 GVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMKKELQKSL--PMKIDVSDSQ 341 (362)
T ss_dssp SCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCHHHHHHHHHHC--CSEEECCSBC
T ss_pred CCCChHHHHHHHhhcccCCcceEEECCCCcCCHHHHHHHHHHc--CCEEEecCCc
Confidence 776642 11223456777777777777652 22221 1 3446666665
No 148
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.25 E-value=1.7e-07 Score=101.10 Aligned_cols=103 Identities=30% Similarity=0.465 Sum_probs=72.8
Q ss_pred EECCCCCCCCccc----ccccccccceecccCccccccccC----CCCCCCCEEEccCCCCCCCchhhhhcCCCCCCEEE
Q 002315 218 LDLGFNNLRSIAA----FSEVSCHIVKLVLRNNALTTLRGI----ENLKSLEGLDISYNIISTFSELEFLASLPYLLNLW 289 (937)
Q Consensus 218 LdLS~N~Lt~L~~----l~~~l~sL~~L~Ls~N~Lt~Lp~L----~~L~sL~~LdLS~N~Ls~l~~l~~L~~L~sL~~L~ 289 (937)
++++.|....++. ....++.|+.|+|++|+|+.++.+ ..+++|+.|+|++|.|+++..+..+..+ +|+.|+
T Consensus 148 l~l~~N~~~~~~~~l~i~~~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~~l~~l~~l-~L~~L~ 226 (267)
T 3rw6_A 148 IDVVLNRRSCMAATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGL-KLEELW 226 (267)
T ss_dssp CCCCTTSHHHHHHHHHHHHHHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGGGGGGGTTS-CCSEEE
T ss_pred ccccCCHHHHHHHHHHHHHhhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCchhhhhcccC-CcceEE
Confidence 4555664443332 113356777777777777776533 3689999999999999998766666666 999999
Q ss_pred ecCCCCCCC----cchhhhHhhhcCCCceeccCCccCC
Q 002315 290 LEGNPLCCS----RWYRAQVFSYFAHPAKLKVDGKEIS 323 (937)
Q Consensus 290 Ls~NpLt~~----~~~r~~~~~~l~~L~~L~LdgN~Is 323 (937)
|++||++.. +.|+..++..++.|+ .|||.+++
T Consensus 227 L~~Npl~~~~~~~~~y~~~il~~~P~L~--~LDg~~v~ 262 (267)
T 3rw6_A 227 LDGNSLCDTFRDQSTYISAIRERFPKLL--RLDGHELP 262 (267)
T ss_dssp CTTSTTGGGCSSHHHHHHHHHHHCTTCC--EESSCBCC
T ss_pred ccCCcCccccCcchhHHHHHHHHCcccC--eECCcCCC
Confidence 999999752 367777788887665 55677765
No 149
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.22 E-value=5.7e-07 Score=90.96 Aligned_cols=122 Identities=20% Similarity=0.141 Sum_probs=87.4
Q ss_pred chHHHHHhcCCCCCcEEEccCC-CCCCC----CCCCCCCCCCCcEEEeeCCCCCccchhhHhhhhhhhhhhhccCCCccc
Q 002315 76 LEQLRRILKLLTSLKVVSALPP-PARDP----TPLSLLPFCRLKVLELRGCDLSTSAAKGLLELRHTLEKIICHNSTNAL 150 (937)
Q Consensus 76 le~Lp~~L~~L~~Lk~LdLs~N-~Is~~----iP~sLs~L~~L~~LdLS~N~Ls~~lp~~L~~L~~Ll~LlL~~N~L~~L 150 (937)
.+.+...+...+.|+.|+|++| .|... +...+...++|++|+|++|.|.......+...- .
T Consensus 25 ~~~l~~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L-------~------- 90 (185)
T 1io0_A 25 EETLKRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEML-------K------- 90 (185)
T ss_dssp HHHHHHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHH-------H-------
T ss_pred HHHHHHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHH-------H-------
Confidence 4456778889999999999998 87642 334566678999999999999764443333221 0
Q ss_pred chhcccchhcccCCCCCCCccEEEccCCcCcc-----chhhcCCCCCCcEEEC--CCCCCCCC------cCcCCCCCCCE
Q 002315 151 RHVFASRIVEIKDSPQWNRLSFVSCSCNRLVI-----MDESLQLLPAVETLDL--SRNKFAKV------DNLRKCVNLKH 217 (937)
Q Consensus 151 ~~l~~~~i~~l~~l~~l~~L~~L~Ls~N~Ls~-----LP~sL~~L~~L~~LdL--s~N~L~~l------~~L~~L~~L~~ 217 (937)
..+.|++|+|++|.|.. +...+...+.|++|+| ++|.|..- ..+...++|+.
T Consensus 91 ---------------~n~~L~~L~L~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~ 155 (185)
T 1io0_A 91 ---------------VNNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLK 155 (185)
T ss_dssp ---------------HCSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCE
T ss_pred ---------------hCCCcCEEECcCCcCCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCE
Confidence 12468889999998873 5567777788888888 77888752 24555677888
Q ss_pred EECCCCCCC
Q 002315 218 LDLGFNNLR 226 (937)
Q Consensus 218 LdLS~N~Lt 226 (937)
|+|++|.|.
T Consensus 156 L~L~~n~i~ 164 (185)
T 1io0_A 156 FGYHFTQQG 164 (185)
T ss_dssp EECCCSSHH
T ss_pred EeccCCCCC
Confidence 888888765
No 150
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.22 E-value=7.9e-07 Score=99.80 Aligned_cols=40 Identities=25% Similarity=0.309 Sum_probs=17.3
Q ss_pred CCCCCEEEccCCCCCCCch---hhhhcCCCCCCEEEecCCCCC
Q 002315 257 LKSLEGLDISYNIISTFSE---LEFLASLPYLLNLWLEGNPLC 296 (937)
Q Consensus 257 L~sL~~LdLS~N~Ls~l~~---l~~L~~L~sL~~L~Ls~NpLt 296 (937)
+++|++|+|+.|.|.+... ...+..+++|+.|+|++|.|+
T Consensus 278 ~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~ 320 (362)
T 2ra8_A 278 LPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLS 320 (362)
T ss_dssp GGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCC
T ss_pred CCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCC
Confidence 4455555555555443211 011123445555555555443
No 151
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.09 E-value=1.8e-06 Score=87.19 Aligned_cols=59 Identities=17% Similarity=0.184 Sum_probs=32.5
Q ss_pred CCccEEEccCCcCc-----cchhhcCCCCCCcEEECCCCCCCCC------cCcCCCCCCCEEEC--CCCCCC
Q 002315 168 NRLSFVSCSCNRLV-----IMDESLQLLPAVETLDLSRNKFAKV------DNLRKCVNLKHLDL--GFNNLR 226 (937)
Q Consensus 168 ~~L~~L~Ls~N~Ls-----~LP~sL~~L~~L~~LdLs~N~L~~l------~~L~~L~~L~~LdL--S~N~Lt 226 (937)
+.|++|+|++|.|. .+...+...++|++|+|++|.|..- ..+...++|++|+| ++|.|+
T Consensus 65 ~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~ 136 (185)
T 1io0_A 65 TYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLG 136 (185)
T ss_dssp CSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCC
T ss_pred CCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHHHHHHHHhCCCceEEEecCCCCCCC
Confidence 35666666666665 2334444555666666666666541 23444455555555 455554
No 152
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.03 E-value=2.5e-05 Score=87.51 Aligned_cols=141 Identities=13% Similarity=0.145 Sum_probs=66.4
Q ss_pred CCccEEEccCCcCccchh-hcCCCCCCcEEECCCCCCCC-CcCcCCCCCCCEEECCCCCCCCcccccccccccceecccC
Q 002315 168 NRLSFVSCSCNRLVIMDE-SLQLLPAVETLDLSRNKFAK-VDNLRKCVNLKHLDLGFNNLRSIAAFSEVSCHIVKLVLRN 245 (937)
Q Consensus 168 ~~L~~L~Ls~N~Ls~LP~-sL~~L~~L~~LdLs~N~L~~-l~~L~~L~~L~~LdLS~N~Lt~L~~l~~~l~sL~~L~Ls~ 245 (937)
..|+.+.+..+ ++.++. .+..+..|+.+.+..+...- ...|..+..|+.+.+..+.+.. ..+..+.+|+.+.+..
T Consensus 230 ~~l~~i~ip~~-~~~i~~~~f~~~~~l~~~~~~~~~~~i~~~~F~~~~~l~~~~~~~~~i~~--~~F~~~~~L~~i~l~~ 306 (394)
T 4fs7_A 230 TGVKNIIIPDS-FTELGKSVFYGCTDLESISIQNNKLRIGGSLFYNCSGLKKVIYGSVIVPE--KTFYGCSSLTEVKLLD 306 (394)
T ss_dssp CCCCEEEECTT-CCEECSSTTTTCSSCCEEEECCTTCEECSCTTTTCTTCCEEEECSSEECT--TTTTTCTTCCEEEECT
T ss_pred CCCceEEECCC-ceecccccccccccceeEEcCCCcceeeccccccccccceeccCceeecc--cccccccccccccccc
Confidence 34555555432 222322 45556666666665543221 1244455555555544332211 1222345555555544
Q ss_pred ccccccc--cCCCCCCCCEEEccCCCCCCCchhhhhcCCCCCCEEEecCCCCCCCcchhhhHhhhcCCCceeccC
Q 002315 246 NALTTLR--GIENLKSLEGLDISYNIISTFSELEFLASLPYLLNLWLEGNPLCCSRWYRAQVFSYFAHPAKLKVD 318 (937)
Q Consensus 246 N~Lt~Lp--~L~~L~sL~~LdLS~N~Ls~l~~l~~L~~L~sL~~L~Ls~NpLt~~~~~r~~~~~~l~~L~~L~Ld 318 (937)
+ ++.++ +|..+.+|+.++|..+ ++.++. .++..+.+|+.+.|..| +... ....|..+..|+.+.|.
T Consensus 307 ~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~-~aF~~c~~L~~i~lp~~-l~~I---~~~aF~~C~~L~~i~lp 374 (394)
T 4fs7_A 307 S-VKFIGEEAFESCTSLVSIDLPYL-VEEIGK-RSFRGCTSLSNINFPLS-LRKI---GANAFQGCINLKKVELP 374 (394)
T ss_dssp T-CCEECTTTTTTCTTCCEECCCTT-CCEECT-TTTTTCTTCCEECCCTT-CCEE---CTTTBTTCTTCCEEEEE
T ss_pred c-cceechhhhcCCCCCCEEEeCCc-ccEEhH-HhccCCCCCCEEEECcc-ccEe---hHHHhhCCCCCCEEEEC
Confidence 3 44442 4556666666666432 444443 44555666666666544 3321 22345555555555553
No 153
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=97.98 E-value=0.00011 Score=82.34 Aligned_cols=105 Identities=15% Similarity=0.176 Sum_probs=68.5
Q ss_pred cCCCCCCCEEECCCCCCCCccc-ccccccccceecccCccccccc--cCCCCCCCCEEEccCCCCCCCchhhhhcCCCCC
Q 002315 209 LRKCVNLKHLDLGFNNLRSIAA-FSEVSCHIVKLVLRNNALTTLR--GIENLKSLEGLDISYNIISTFSELEFLASLPYL 285 (937)
Q Consensus 209 L~~L~~L~~LdLS~N~Lt~L~~-l~~~l~sL~~L~Ls~N~Lt~Lp--~L~~L~sL~~LdLS~N~Ls~l~~l~~L~~L~sL 285 (937)
|..+..|+.+.+..+. ..+.. .+..++.|+.+.+. +.++.++ .|..+.+|+.+.|..+ ++.+.. .+|..+.+|
T Consensus 261 F~~c~~L~~i~lp~~~-~~I~~~aF~~c~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~-~aF~~C~~L 336 (394)
T 4gt6_A 261 FDSCAYLASVKMPDSV-VSIGTGAFMNCPALQDIEFS-SRITELPESVFAGCISLKSIDIPEG-ITQILD-DAFAGCEQL 336 (394)
T ss_dssp TTTCSSCCEEECCTTC-CEECTTTTTTCTTCCEEECC-TTCCEECTTTTTTCTTCCEEECCTT-CCEECT-TTTTTCTTC
T ss_pred eeecccccEEeccccc-ceecCcccccccccccccCC-CcccccCceeecCCCCcCEEEeCCc-ccEehH-hHhhCCCCC
Confidence 4455566666665432 22322 23345667777774 4566664 6788888999888754 666654 567888889
Q ss_pred CEEEecCCCCCCCcchhhhHhhhcCCCceeccCCcc
Q 002315 286 LNLWLEGNPLCCSRWYRAQVFSYFAHPAKLKVDGKE 321 (937)
Q Consensus 286 ~~L~Ls~NpLt~~~~~r~~~~~~l~~L~~L~LdgN~ 321 (937)
+.+.|..+ ++.. ....|..+..|+.+.+.++.
T Consensus 337 ~~i~ip~s-v~~I---~~~aF~~C~~L~~i~~~~~~ 368 (394)
T 4gt6_A 337 ERIAIPSS-VTKI---PESAFSNCTALNNIEYSGSR 368 (394)
T ss_dssp CEEEECTT-CCBC---CGGGGTTCTTCCEEEESSCH
T ss_pred CEEEECcc-cCEE---hHhHhhCCCCCCEEEECCce
Confidence 99988654 5433 34567788888888888764
No 154
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.73 E-value=5.3e-06 Score=89.42 Aligned_cols=80 Identities=33% Similarity=0.451 Sum_probs=40.1
Q ss_pred CCCCCcEEECCCCCCCCCcCcC----CCCCCCEEECCCCCCCCcccccccccccceecccCccccccccCCCCCCCCEEE
Q 002315 189 LLPAVETLDLSRNKFAKVDNLR----KCVNLKHLDLGFNNLRSIAAFSEVSCHIVKLVLRNNALTTLRGIENLKSLEGLD 264 (937)
Q Consensus 189 ~L~~L~~LdLs~N~L~~l~~L~----~L~~L~~LdLS~N~Lt~L~~l~~~l~sL~~L~Ls~N~Lt~Lp~L~~L~sL~~Ld 264 (937)
.+++|+.|+|++|+|+.++.+. .+++|+.|+|++|.|+.+..+ ..+..+ +|+.|+
T Consensus 168 ~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~~l--------------------~~l~~l-~L~~L~ 226 (267)
T 3rw6_A 168 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSEREL--------------------DKIKGL-KLEELW 226 (267)
T ss_dssp HCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGGGG--------------------GGGTTS-CCSEEE
T ss_pred hCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCchhh--------------------hhcccC-CcceEE
Confidence 4555555555555555543322 345555555555554443211 112223 677777
Q ss_pred ccCCCCCC-Cch-----hhhhcCCCCCCEEE
Q 002315 265 ISYNIIST-FSE-----LEFLASLPYLLNLW 289 (937)
Q Consensus 265 LS~N~Ls~-l~~-----l~~L~~L~sL~~L~ 289 (937)
|++|.+.. ++. ...+..+|+|+.|+
T Consensus 227 L~~Npl~~~~~~~~~y~~~il~~~P~L~~LD 257 (267)
T 3rw6_A 227 LDGNSLCDTFRDQSTYISAIRERFPKLLRLD 257 (267)
T ss_dssp CTTSTTGGGCSSHHHHHHHHHHHCTTCCEES
T ss_pred ccCCcCccccCcchhHHHHHHHHCcccCeEC
Confidence 77777653 211 12355677777664
No 155
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=97.66 E-value=0.0001 Score=82.60 Aligned_cols=205 Identities=13% Similarity=0.069 Sum_probs=144.9
Q ss_pred HHhcCCCCCcEEEccCCCCCCCCCCCCCCCCCCcEEEeeCCCCCccchhhHhhhhhhhhhhhccCCCcccc---------
Q 002315 81 RILKLLTSLKVVSALPPPARDPTPLSLLPFCRLKVLELRGCDLSTSAAKGLLELRHTLEKIICHNSTNALR--------- 151 (937)
Q Consensus 81 ~~L~~L~~Lk~LdLs~N~Is~~iP~sLs~L~~L~~LdLS~N~Ls~~lp~~L~~L~~Ll~LlL~~N~L~~L~--------- 151 (937)
..|.++++|+.+.|.+ .+.......|..+++|+.+.|..+ ++......|.....|..+.+..+. ..+.
T Consensus 156 ~aF~~c~~L~~i~l~~-~~~~I~~~~F~~c~~L~~i~l~~~-~~~I~~~~F~~~~~L~~i~~~~~~-~~i~~~~~~~~~l 232 (394)
T 4fs7_A 156 EAFATCESLEYVSLPD-SMETLHNGLFSGCGKLKSIKLPRN-LKIIRDYCFAECILLENMEFPNSL-YYLGDFALSKTGV 232 (394)
T ss_dssp TTTTTCTTCCEEECCT-TCCEECTTTTTTCTTCCBCCCCTT-CCEECTTTTTTCTTCCBCCCCTTC-CEECTTTTTTCCC
T ss_pred hhhcccCCCcEEecCC-ccceeccccccCCCCceEEEcCCC-ceEeCchhhccccccceeecCCCc-eEeehhhcccCCC
Confidence 4688899999999954 455566678999999999999876 555555667666665554443321 1111
Q ss_pred -hh-cccchhccc--CCCCCCCccEEEccCCcCccchhhcCCCCCCcEEECCCCCCCCCcCcCCCCCCCEEECCCCCCCC
Q 002315 152 -HV-FASRIVEIK--DSPQWNRLSFVSCSCNRLVIMDESLQLLPAVETLDLSRNKFAKVDNLRKCVNLKHLDLGFNNLRS 227 (937)
Q Consensus 152 -~l-~~~~i~~l~--~l~~l~~L~~L~Ls~N~Ls~LP~sL~~L~~L~~LdLs~N~L~~l~~L~~L~~L~~LdLS~N~Lt~ 227 (937)
.+ ++..+..+. .+..+..|+.+.+..+....-...|..+..|+.+.+..+.+.. ..|..+.+|+.+.+..+ ++.
T Consensus 233 ~~i~ip~~~~~i~~~~f~~~~~l~~~~~~~~~~~i~~~~F~~~~~l~~~~~~~~~i~~-~~F~~~~~L~~i~l~~~-i~~ 310 (394)
T 4fs7_A 233 KNIIIPDSFTELGKSVFYGCTDLESISIQNNKLRIGGSLFYNCSGLKKVIYGSVIVPE-KTFYGCSSLTEVKLLDS-VKF 310 (394)
T ss_dssp CEEEECTTCCEECSSTTTTCSSCCEEEECCTTCEECSCTTTTCTTCCEEEECSSEECT-TTTTTCTTCCEEEECTT-CCE
T ss_pred ceEEECCCceecccccccccccceeEEcCCCcceeeccccccccccceeccCceeecc-ccccccccccccccccc-cce
Confidence 11 112222222 2346778999999877554434578888999998887665432 26788899999999765 677
Q ss_pred ccc-ccccccccceecccCccccccc--cCCCCCCCCEEEccCCCCCCCchhhhhcCCCCCCEEEecCC
Q 002315 228 IAA-FSEVSCHIVKLVLRNNALTTLR--GIENLKSLEGLDISYNIISTFSELEFLASLPYLLNLWLEGN 293 (937)
Q Consensus 228 L~~-l~~~l~sL~~L~Ls~N~Lt~Lp--~L~~L~sL~~LdLS~N~Ls~l~~l~~L~~L~sL~~L~Ls~N 293 (937)
+.. .+..+.+|+.+.|..+ ++.++ +|.++.+|+.+.|..| ++.++. .++..+++|+.+.|..+
T Consensus 311 I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~-~aF~~C~~L~~i~lp~~ 376 (394)
T 4fs7_A 311 IGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIGA-NAFQGCINLKKVELPKR 376 (394)
T ss_dssp ECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECT-TTBTTCTTCCEEEEEGG
T ss_pred echhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEehH-HHhhCCCCCCEEEECCC
Confidence 765 3446789999999754 77774 7899999999999877 777765 67899999999999765
No 156
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=97.59 E-value=0.00053 Score=76.67 Aligned_cols=125 Identities=10% Similarity=0.182 Sum_probs=87.4
Q ss_pred hcCCCCCCcEEECCCCCCCCC--cCcCCCCCCCEEECCCCCCCCccc-ccccccccceecccCccccccc--cCCCCCCC
Q 002315 186 SLQLLPAVETLDLSRNKFAKV--DNLRKCVNLKHLDLGFNNLRSIAA-FSEVSCHIVKLVLRNNALTTLR--GIENLKSL 260 (937)
Q Consensus 186 sL~~L~~L~~LdLs~N~L~~l--~~L~~L~~L~~LdLS~N~Lt~L~~-l~~~l~sL~~L~Ls~N~Lt~Lp--~L~~L~sL 260 (937)
.|..+..|+.+.+..+.. .+ ..|..+..|+.+.+. +.++.++. .+..+.+|+.+.|..+ ++.+. +|.+|.+|
T Consensus 260 aF~~c~~L~~i~lp~~~~-~I~~~aF~~c~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L 336 (394)
T 4gt6_A 260 AFDSCAYLASVKMPDSVV-SIGTGAFMNCPALQDIEFS-SRITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQL 336 (394)
T ss_dssp TTTTCSSCCEEECCTTCC-EECTTTTTTCTTCCEEECC-TTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTC
T ss_pred eeeecccccEEecccccc-eecCcccccccccccccCC-CcccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCC
Confidence 677888999999976543 33 378889999999996 56777765 3446789999999764 77774 78999999
Q ss_pred CEEEccCCCCCCCchhhhhcCCCCCCEEEecCCCCCCCcchhhhHhhhcCCCceeccCCcc
Q 002315 261 EGLDISYNIISTFSELEFLASLPYLLNLWLEGNPLCCSRWYRAQVFSYFAHPAKLKVDGKE 321 (937)
Q Consensus 261 ~~LdLS~N~Ls~l~~l~~L~~L~sL~~L~Ls~NpLt~~~~~r~~~~~~l~~L~~L~LdgN~ 321 (937)
+.+.|..+ ++.+.. .+|..+++|+.+.+.+|... ...+.....|+.+.+..+.
T Consensus 337 ~~i~ip~s-v~~I~~-~aF~~C~~L~~i~~~~~~~~------~~~~~~~~~L~~i~i~~~~ 389 (394)
T 4gt6_A 337 ERIAIPSS-VTKIPE-SAFSNCTALNNIEYSGSRSQ------WNAISTDSGLQNLPVAPGS 389 (394)
T ss_dssp CEEEECTT-CCBCCG-GGGTTCTTCCEEEESSCHHH------HHTCBCCCCC---------
T ss_pred CEEEECcc-cCEEhH-hHhhCCCCCCEEEECCceee------hhhhhccCCCCEEEeCCCC
Confidence 99999654 777765 67899999999999987542 1223345556666655543
No 157
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=97.25 E-value=0.0024 Score=70.65 Aligned_cols=102 Identities=11% Similarity=0.132 Sum_probs=42.8
Q ss_pred hcCCCCCCcEEECCCCCCCCC--cCcCCCCCCCEEECCCCCCCCccc-ccccccccceecccCccccccc--cCCCCCCC
Q 002315 186 SLQLLPAVETLDLSRNKFAKV--DNLRKCVNLKHLDLGFNNLRSIAA-FSEVSCHIVKLVLRNNALTTLR--GIENLKSL 260 (937)
Q Consensus 186 sL~~L~~L~~LdLs~N~L~~l--~~L~~L~~L~~LdLS~N~Lt~L~~-l~~~l~sL~~L~Ls~N~Lt~Lp--~L~~L~sL 260 (937)
.+....+|+.+.+..+ +..+ ..+..+..|+.+.+..+ ++.+.. .+..+..|+.+.+..+ ++.++ .+..+++|
T Consensus 212 ~f~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L 288 (379)
T 4h09_A 212 GFSYGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCSNL 288 (379)
T ss_dssp TTTTCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CSEECTTTTTTCTTC
T ss_pred ccccccccceeeeccc-eeEEccccccCCccceEEEcCCC-ccEeCccccceeehhcccccccc-ceecccccccccccc
Confidence 3344444554444332 2222 13444445555554433 333332 1222344444444322 33332 34445555
Q ss_pred CEEEccCCCCCCCchhhhhcCCCCCCEEEec
Q 002315 261 EGLDISYNIISTFSELEFLASLPYLLNLWLE 291 (937)
Q Consensus 261 ~~LdLS~N~Ls~l~~l~~L~~L~sL~~L~Ls 291 (937)
+.+.+.++.++.++. ..+..+.+|+.+.|.
T Consensus 289 ~~i~l~~~~i~~I~~-~aF~~c~~L~~i~lp 318 (379)
T 4h09_A 289 TKVVMDNSAIETLEP-RVFMDCVKLSSVTLP 318 (379)
T ss_dssp CEEEECCTTCCEECT-TTTTTCTTCCEEECC
T ss_pred ccccccccccceehh-hhhcCCCCCCEEEcC
Confidence 555554444444433 334444555555553
No 158
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=97.23 E-value=0.005 Score=68.02 Aligned_cols=102 Identities=16% Similarity=0.282 Sum_probs=47.1
Q ss_pred hcCCCCCCcEEECCCCCCCCCc--CcCCCCCCCEEECCCCCCCCccc-ccccccccceecccCccccccc--cCCCCCCC
Q 002315 186 SLQLLPAVETLDLSRNKFAKVD--NLRKCVNLKHLDLGFNNLRSIAA-FSEVSCHIVKLVLRNNALTTLR--GIENLKSL 260 (937)
Q Consensus 186 sL~~L~~L~~LdLs~N~L~~l~--~L~~L~~L~~LdLS~N~Lt~L~~-l~~~l~sL~~L~Ls~N~Lt~Lp--~L~~L~sL 260 (937)
.+..+..|+.+.+..+ ++.+. .|..+.+|+.+.+..+ +..++. .+..+.+|+.+.+.++.++.++ .|.++.+|
T Consensus 235 ~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L 312 (379)
T 4h09_A 235 AFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKL 312 (379)
T ss_dssp TTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTC
T ss_pred cccCCccceEEEcCCC-ccEeCccccceeehhcccccccc-ceeccccccccccccccccccccccceehhhhhcCCCCC
Confidence 3444555555555443 33332 4444555555555332 333332 2223445555555555555543 45555555
Q ss_pred CEEEccCCCCCCCchhhhhcCCCCCCEEEec
Q 002315 261 EGLDISYNIISTFSELEFLASLPYLLNLWLE 291 (937)
Q Consensus 261 ~~LdLS~N~Ls~l~~l~~L~~L~sL~~L~Ls 291 (937)
+.+.|..+ ++.+.. .++..+.+|+.+.+.
T Consensus 313 ~~i~lp~~-l~~I~~-~aF~~C~~L~~i~ip 341 (379)
T 4h09_A 313 SSVTLPTA-LKTIQV-YAFKNCKALSTISYP 341 (379)
T ss_dssp CEEECCTT-CCEECT-TTTTTCTTCCCCCCC
T ss_pred CEEEcCcc-ccEEHH-HHhhCCCCCCEEEEC
Confidence 55555432 444432 344455555555543
No 159
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=96.90 E-value=0.00038 Score=70.47 Aligned_cols=34 Identities=9% Similarity=0.157 Sum_probs=20.7
Q ss_pred CCCcEEECCCCCCCC--CcCcCCCCCCCEEECCCCC
Q 002315 191 PAVETLDLSRNKFAK--VDNLRKCVNLKHLDLGFNN 224 (937)
Q Consensus 191 ~~L~~LdLs~N~L~~--l~~L~~L~~L~~LdLS~N~ 224 (937)
..|+.|+|+++.|+. +..+..+++|+.|+|++|.
T Consensus 61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~ 96 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCH 96 (176)
T ss_dssp CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCT
T ss_pred ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCC
Confidence 356777777766654 3455566666666666663
No 160
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=96.90 E-value=0.00083 Score=69.20 Aligned_cols=119 Identities=16% Similarity=0.183 Sum_probs=79.8
Q ss_pred HHHHHhcCCCCCcEEEccCC-CCCCC----CCCCCCCCCCCcEEEeeCCCCCccchhhHhhhhhhhhhhhccCCCcccch
Q 002315 78 QLRRILKLLTSLKVVSALPP-PARDP----TPLSLLPFCRLKVLELRGCDLSTSAAKGLLELRHTLEKIICHNSTNALRH 152 (937)
Q Consensus 78 ~Lp~~L~~L~~Lk~LdLs~N-~Is~~----iP~sLs~L~~L~~LdLS~N~Ls~~lp~~L~~L~~Ll~LlL~~N~L~~L~~ 152 (937)
.+...+.+-+.|+.|+|++| .|... +...+..-+.|+.|+|++|.|.......+...-. .|
T Consensus 32 ~l~~ll~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~-------~N------- 97 (197)
T 1pgv_A 32 CINRLREDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIE-------TS------- 97 (197)
T ss_dssp HHHHHHTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHH-------HC-------
T ss_pred HHHHHHhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHh-------cC-------
Confidence 46667788889999999875 66532 2345666788999999999987655544443311 11
Q ss_pred hcccchhcccCCCCCCCccEEEccCCcCc-----cchhhcCCCCCCcEEECCCCC---CCC-----C-cCcCCCCCCCEE
Q 002315 153 VFASRIVEIKDSPQWNRLSFVSCSCNRLV-----IMDESLQLLPAVETLDLSRNK---FAK-----V-DNLRKCVNLKHL 218 (937)
Q Consensus 153 l~~~~i~~l~~l~~l~~L~~L~Ls~N~Ls-----~LP~sL~~L~~L~~LdLs~N~---L~~-----l-~~L~~L~~L~~L 218 (937)
+.|+.|+|+.|.|. .|...+..-+.|++|+|++|. +.. + ..+..-+.|+.|
T Consensus 98 ---------------~tL~~L~L~~N~Ig~~Ga~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L 162 (197)
T 1pgv_A 98 ---------------PSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRV 162 (197)
T ss_dssp ---------------SSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEE
T ss_pred ---------------CccCeEecCCCcCCHHHHHHHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeE
Confidence 36888888888887 445567777778888887653 332 1 234555777888
Q ss_pred ECCCCCC
Q 002315 219 DLGFNNL 225 (937)
Q Consensus 219 dLS~N~L 225 (937)
+|+.|.+
T Consensus 163 ~l~~~~~ 169 (197)
T 1pgv_A 163 GISFASM 169 (197)
T ss_dssp ECCCCCH
T ss_pred eccCCCc
Confidence 8876654
No 161
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=96.72 E-value=0.0021 Score=61.54 Aligned_cols=61 Identities=21% Similarity=0.231 Sum_probs=48.3
Q ss_pred ceecccCcccc--ccccCCCCCCCCEEEccCCCCCCCchhhhhcCCCCCCEEEecCCCCCCCcch
Q 002315 239 VKLVLRNNALT--TLRGIENLKSLEGLDISYNIISTFSELEFLASLPYLLNLWLEGNPLCCSRWY 301 (937)
Q Consensus 239 ~~L~Ls~N~Lt--~Lp~L~~L~sL~~LdLS~N~Ls~l~~l~~L~~L~sL~~L~Ls~NpLt~~~~~ 301 (937)
..++.+++.|+ .+|. .-.++|+.|+|++|+|+.++. ..|..+++|+.|+|.+|||.|++.+
T Consensus 11 ~~v~Cs~~~L~~~~vP~-~lp~~l~~L~Ls~N~l~~l~~-~~f~~l~~L~~L~L~~NP~~CdC~l 73 (130)
T 3rfe_A 11 TLVDCGRRGLTWASLPT-AFPVDTTELVLTGNNLTALPP-GLLDALPALRTAHLGANPWRCDCRL 73 (130)
T ss_dssp TEEECCSSCCCTTTSCS-CCCTTCSEEECTTSCCSSCCT-TTGGGCTTCCEEECCSSCCBCSGGG
T ss_pred CEEEeCCCCCccccCCC-CCCcCCCEEECCCCcCCccCh-hhhhhccccCEEEecCCCeeccCcc
Confidence 36677777777 6662 112468999999999999875 6788899999999999999999854
No 162
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=96.68 E-value=0.0023 Score=64.74 Aligned_cols=80 Identities=19% Similarity=0.173 Sum_probs=55.5
Q ss_pred CCCCEEECCCCCCCC--cccccccccccceecccCc-cccc--cccCCCC----CCCCEEEccCCC-CCCCchhhhhcCC
Q 002315 213 VNLKHLDLGFNNLRS--IAAFSEVSCHIVKLVLRNN-ALTT--LRGIENL----KSLEGLDISYNI-ISTFSELEFLASL 282 (937)
Q Consensus 213 ~~L~~LdLS~N~Lt~--L~~l~~~l~sL~~L~Ls~N-~Lt~--Lp~L~~L----~sL~~LdLS~N~-Ls~l~~l~~L~~L 282 (937)
..|+.|+|+++.|+. +..+ ..+++|+.|+|++| .|++ +..+..+ ++|++|+|+++. |++- .+..+..+
T Consensus 61 ~~L~~LDLs~~~Itd~GL~~L-~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~-Gl~~L~~~ 138 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGFDHM-EGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDK-GIIALHHF 138 (176)
T ss_dssp CCEEEEEEESCCCCGGGGGGG-TTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHH-HHHHGGGC
T ss_pred ceEeEEeCcCCCccHHHHHHh-cCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHH-HHHHHhcC
Confidence 468888888888764 3233 35678888888888 4665 3445443 468888888874 6653 34567778
Q ss_pred CCCCEEEecCCC
Q 002315 283 PYLLNLWLEGNP 294 (937)
Q Consensus 283 ~sL~~L~Ls~Np 294 (937)
++|+.|+|++++
T Consensus 139 ~~L~~L~L~~c~ 150 (176)
T 3e4g_A 139 RNLKYLFLSDLP 150 (176)
T ss_dssp TTCCEEEEESCT
T ss_pred CCCCEEECCCCC
Confidence 888888888876
No 163
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=96.47 E-value=0.0029 Score=65.16 Aligned_cols=109 Identities=12% Similarity=0.089 Sum_probs=55.7
Q ss_pred hcCCCCCCcEEECCCC-CCCCC------cCcCCCCCCCEEECCCCCCCCc-----ccccccccccceecccCcccccc--
Q 002315 186 SLQLLPAVETLDLSRN-KFAKV------DNLRKCVNLKHLDLGFNNLRSI-----AAFSEVSCHIVKLVLRNNALTTL-- 251 (937)
Q Consensus 186 sL~~L~~L~~LdLs~N-~L~~l------~~L~~L~~L~~LdLS~N~Lt~L-----~~l~~~l~sL~~L~Ls~N~Lt~L-- 251 (937)
.+..-+.|+.|+|++| .|..- ..+..-+.|+.|+|++|.|... ......-+.|+.|+|++|.|..-
T Consensus 36 ll~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga 115 (197)
T 1pgv_A 36 LREDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELL 115 (197)
T ss_dssp HHTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHH
T ss_pred HHhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHH
Confidence 3444556666776664 55431 2455556677777777766531 11111224566666666666541
Q ss_pred ----ccCCCCCCCCEEEccCCCCCCCch------hhhhcCCCCCCEEEecCCC
Q 002315 252 ----RGIENLKSLEGLDISYNIISTFSE------LEFLASLPYLLNLWLEGNP 294 (937)
Q Consensus 252 ----p~L~~L~sL~~LdLS~N~Ls~l~~------l~~L~~L~sL~~L~Ls~Np 294 (937)
..+...+.|+.|+|++|....+.. ...+..-+.|+.|+++.|.
T Consensus 116 ~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~ 168 (197)
T 1pgv_A 116 ARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFAS 168 (197)
T ss_dssp HHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCC
T ss_pred HHHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCC
Confidence 245555667777776543211111 1234444556666665443
No 164
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=95.21 E-value=0.021 Score=54.39 Aligned_cols=53 Identities=23% Similarity=0.307 Sum_probs=35.1
Q ss_pred EEEccCCcCc--cchhhcCCCCCCcEEECCCCCCCCCc--CcCCCCCCCEEECCCCCCC
Q 002315 172 FVSCSCNRLV--IMDESLQLLPAVETLDLSRNKFAKVD--NLRKCVNLKHLDLGFNNLR 226 (937)
Q Consensus 172 ~L~Ls~N~Ls--~LP~sL~~L~~L~~LdLs~N~L~~l~--~L~~L~~L~~LdLS~N~Lt 226 (937)
.++++++.|+ .+|..+ .++|+.|+|++|+|+.++ .|..+++|+.|+|++|.+.
T Consensus 12 ~v~Cs~~~L~~~~vP~~l--p~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTAF--PVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp EEECCSSCCCTTTSCSCC--CTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred EEEeCCCCCccccCCCCC--CcCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence 6777777777 776542 235777777777777764 4666677777777776553
No 165
>4fxw_B Splicing factor 1; UHM, protein binding, phosphorylat; HET: SEP; 2.29A {Homo sapiens} PDB: 4fxx_A
Probab=42.77 E-value=13 Score=35.19 Aligned_cols=30 Identities=33% Similarity=0.701 Sum_probs=23.8
Q ss_pred CCCCCCcc--------------hhhhhhhhhhhHHHHHhhccce
Q 002315 595 RPGSPPHY--------------REDILHRRHNLVAEILQLSAES 624 (937)
Q Consensus 595 ~p~spp~~--------------~~d~l~rr~~~~~~~lq~~~~~ 624 (937)
+|..||.| +|-+-..||.||||++++-.++
T Consensus 72 SPSPpP~Yd~~G~R~NTRE~R~r~~LE~ER~~lIe~~~k~~P~f 115 (124)
T 4fxw_B 72 SPSPEPIYNSEGKRLNTREFRTRKKLEEERHNLITEMVALNPDF 115 (124)
T ss_dssp CCCCCCCBCTTSCBSSCHHHHHHHHHHHHHHHHHHHGGGTCSSC
T ss_pred CCCCCCccCccccccchHHHHHHHHHHHHHHHHHHHHHHHCcCC
Confidence 46678887 5667788999999999986653
Done!