BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 002316
(936 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q6YYA3|CRS1_ORYSJ Chloroplastic group IIA intron splicing facilitator CRS1,
chloroplastic OS=Oryza sativa subsp. japonica
GN=Os08g0360100 PE=2 SV=1
Length = 725
Score = 379 bits (972), Expect = e-104, Method: Compositional matrix adjust.
Identities = 229/601 (38%), Positives = 348/601 (57%), Gaps = 49/601 (8%)
Query: 224 FPWEKRKEEVAEGRWLVKRRSSRTSL---AELTLPESELRRLRNLTFQTKSKTRIKGAGL 280
PW ++E + +V RR +T + AE L EL RLR + R K AG+
Sbjct: 125 VPWAAARDEETK---VVLRREKKTRVPTRAETELEAGELERLRRAARGKERWARAKKAGI 181
Query: 281 TQAVVDIIHEKW-KTSEIVRLKIEGAPALNMKRMHEILERKTGGLVIWRSGTAVSLYRGV 339
T VV+ + +W K E+ ++I M R EILE KTGGLV+W G +YRG
Sbjct: 182 TDEVVEEVRGQWAKGQELAGVRIVEPLRRCMDRAREILEIKTGGLVVWTRGGIHFVYRGS 241
Query: 340 SYEVPSVQLNKRIYKRNELPASSVSQATDKQIHKQISMSGNSLSAAADKTAQDPSNFDSY 399
SY ++ KR H+ LS T+ +P++ Y
Sbjct: 242 SY----LENAKR--------------------HRDFVNYNEELSPV---TSNNPTSQGKY 274
Query: 400 NNVHATQVNLETASEEQETDFVREVKYEDEVEKLLDGLGPRYTDWPGCDPLPVDADMLPG 459
+ T N +++++ ++ YE EV +LLD LGPR+ DW PLPVDAD+LP
Sbjct: 275 WSKDETLTNDNDEADDKDDKPIKGTLYEREVNRLLDSLGPRFIDWWWNTPLPVDADLLPE 334
Query: 460 IVPGYQPPFRVLPYGVRSTLARKEATNLQRLARVLPPHFALGRSRQLQGLAVAMIKLWEK 519
+VP ++ PFR P GVR LA +E T L++ AR LP HF LGR+ +LQGLA A++KLWEK
Sbjct: 335 VVPDFKTPFRQCPPGVRPALADEELTYLRKHARPLPTHFVLGRNTKLQGLAAAILKLWEK 394
Query: 520 SSIAKIALKRGVQLTTSERMVEDIKKLTGGTLLSRNKDFLVFYRGKNFLSPDVTEALQER 579
S IAK+A+K G+Q T E+M ++K+LTGGT++ RNKD+++ YRGK+FL V E++ ER
Sbjct: 395 SLIAKVAVKVGIQNTNHEQMARNLKRLTGGTVILRNKDYIIIYRGKDFLPGGVAESVIER 454
Query: 580 ERLAKSLQDEEEQARLRASAFVLPSIETIEKSGTAGTLKETLDANSRWGKRLDDSHKENL 639
E Q +EE+ARL+ + + + + GT +E D + +R ++ N
Sbjct: 455 ESQVHDQQAKEEEARLKMADSLQMIVGLSSERSYVGTFREYQDFHDSHARRTTEN---NF 511
Query: 640 VREAEVRRHAYLVQKLEKKLARAE-------RKLLRAERALSKVEESLKPAERQADPESI 692
+ E ++H +LEK+L E +K+ R+ + L+K+ S P+++ D E +
Sbjct: 512 RIQLEAKKH-----RLEKELKDQEWRLSMLTKKIERSNQVLAKLHSSWSPSKKDGDRELL 566
Query: 693 TDEERFMFRKLGLRMKAFLLLGRRGVFDGTVENMHLHWKYRELVKIIVKVKTFDQAKKIA 752
T+EER +FRK+GL+M +LLGRRGVF+G +E +H HWK++E+VK+I K Q +
Sbjct: 567 TEEERRIFRKIGLKMDEHVLLGRRGVFEGVIEEIHQHWKHKEVVKVITKQNQASQITYTS 626
Query: 753 LALEAESGGVLVSVDKISKGYAMVVYRGKDYQRPSTLRPKNLLTKRKALARSIELQRQEA 812
+ LE E+GG L+++++ + +A+++YRGK+Y+RP+ P NLLTKR+AL RSIE+QR+ +
Sbjct: 627 MMLEVETGGTLIAIERFTTSHAIILYRGKNYRRPTKSAPSNLLTKREALQRSIEVQRRGS 686
Query: 813 L 813
+
Sbjct: 687 M 687
>sp|Q9FYT6|CRS1_MAIZE Chloroplastic group IIA intron splicing facilitator CRS1,
chloroplastic OS=Zea mays GN=CRS1 PE=1 SV=1
Length = 715
Score = 374 bits (961), Expect = e-102, Method: Compositional matrix adjust.
Identities = 217/544 (39%), Positives = 323/544 (59%), Gaps = 52/544 (9%)
Query: 274 RIKGAGLTQAVVDIIHEKWKTSE-IVRLKIEGAPALNMKRMHEILERKTGGLVIWRSGTA 332
R K AG+T VV + +W + E + ++I +M R EILE KTGGLV+W G
Sbjct: 190 RAKKAGVTDEVVKEVRREWASGEELAAVRIVEPLRRSMDRAREILEIKTGGLVVWTKGDM 249
Query: 333 VSLYRGVSYEVPSVQLNKRIYKRNELPASSVSQATDKQIHKQISMSGNSLSAAADKTAQD 392
+YRG Y Q K H ++
Sbjct: 250 HFVYRGSKY-----------------------QQNAKHSHTFLT---------------- 270
Query: 393 PSNFDSYNNVH---ATQVNLETASEEQETDFVREVKYEDEVEKLLDGLGPRYTDWPGCDP 449
NVH A Q N ++ +++ + V+ YE EV +LLD LGPR+ DW P
Sbjct: 271 --------NVHKDDAFQENDQSICGQKDEEPVKGTLYEREVNRLLDTLGPRFVDWWWDTP 322
Query: 450 LPVDADMLPGIVPGYQPPFRVLPYGVRSTLARKEATNLQRLARVLPPHFALGRSRQLQGL 509
LPVDAD+LP VPG + P+R+ P GVR TLA +E T L++LAR+LP HFALGR+ +LQGL
Sbjct: 323 LPVDADLLPEFVPGSKTPYRLCPPGVRPTLADEELTYLRKLARLLPTHFALGRNTRLQGL 382
Query: 510 AVAMIKLWEKSSIAKIALKRGVQLTTSERMVEDIKKLTGGTLLSRNKDFLVFYRGKNFLS 569
A A++KLWEKS IAKIA+K G+Q T +E+M ++K LTGGT++ RNKDF++ YRGK+FL
Sbjct: 383 AAAILKLWEKSLIAKIAVKIGIQNTNNEQMAWNLKHLTGGTVILRNKDFIILYRGKDFLP 442
Query: 570 PDVTEALQERERLAKSLQDEEEQARLRASAFVLPSIETIEKSGTAGTLKETLDANSRWGK 629
V + + +RE Q +EE+ARL+A L + + + + GT +E ++++
Sbjct: 443 GGVAQTVIQREAQVHDEQVKEEEARLKA-VDSLQMVGELSEESSLGTFREYQGFHAKFVH 501
Query: 630 RLDDSHKENLVREAEVRRHAYLVQKLEKKLARAERKLLRAERALSKVEESLKPAERQADP 689
++ + EAE R ++ E KL+ +K+ R+ +AL+K+ S P+E+ AD
Sbjct: 502 ENTENSNTMIELEAEKYRLEKELKDHEWKLSVLNKKIERSNQALAKLHSSWSPSEQSADR 561
Query: 690 ESITDEERFMFRKLGLRMKAFLLLGRRGVFDGTVENMHLHWKYRELVKIIVKVKTFDQAK 749
E +T+EE+ MFR++G +M +LLGRRG+FDG +E +H HWK++E+VK+I K Q
Sbjct: 562 EHLTEEEKIMFRRIGRKMDGLVLLGRRGIFDGVIEEIHQHWKHKEVVKVITKQNQTRQIM 621
Query: 750 KIALALEAESGGVLVSVDKISKGYAMVVYRGKDYQRPSTLRPKNLLTKRKALARSIELQR 809
A LE E+GG+L++V+K++ +A+++YRGK+Y+RP+ NLLTKR+AL RSIE+QR
Sbjct: 622 YAASLLEVETGGILIAVEKLTTSHAIILYRGKNYRRPAKSSFSNLLTKREALRRSIEVQR 681
Query: 810 QEAL 813
+ ++
Sbjct: 682 RGSM 685
Score = 43.9 bits (102), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 85/371 (22%), Positives = 148/371 (39%), Gaps = 79/371 (21%)
Query: 253 TLPESELRRLRNLT------FQTKSKTRIKGAGLTQAVVDIIHEKWKTSEIVRLKIE-GA 305
TL + EL LR L F TR++G L A++ + W+ S I ++ ++ G
Sbjct: 351 TLADEELTYLRKLARLLPTHFALGRNTRLQG--LAAAILKL----WEKSLIAKIAVKIGI 404
Query: 306 PALNMKRMHEILERKTGGLVIWRSGTAVSLYRGVSYEVPSVQLNKRIYKRNELPASSVSQ 365
N ++M L+ TGG VI R+ + LYRG + +P + + + +R +Q
Sbjct: 405 QNTNNEQMAWNLKHLTGGTVILRNKDFIILYRGKDF-LPG-GVAQTVIQRE-------AQ 455
Query: 366 ATDKQIHKQISM--SGNSLSAAADKTAQDP-SNFDSYNNVHATQV-----NLETASEEQE 417
D+Q+ ++ + + +SL + + + F Y HA V N T E +
Sbjct: 456 VHDEQVKEEEARLKAVDSLQMVGELSEESSLGTFREYQGFHAKFVHENTENSNTMIELEA 515
Query: 418 TDFVREVKYED----------EVEKLLDGLGPRYTDWPGCDPLPVDADMLPGIVPGYQPP 467
+ E + +D ++E+ L ++ W P AD
Sbjct: 516 EKYRLEKELKDHEWKLSVLNKKIERSNQALAKLHSSW---SPSEQSAD------------ 560
Query: 468 FRVLPYGVRSTLARKEATNLQRLARVLPPHFALGRSRQLQGLAVAMIKLWEKSSIAKIAL 527
R L +E +R+ R + LGR G+ + + W+ + K+
Sbjct: 561 --------REHLTEEEKIMFRRIGRKMDGLVLLGRRGIFDGVIEEIHQHWKHKEVVKVIT 612
Query: 528 K----RGVQLTTSERMVEDIKKLTGGTLLSRNK----DFLVFYRGKNFLSP---DVTEAL 576
K R + S VE TGG L++ K ++ YRGKN+ P + L
Sbjct: 613 KQNQTRQIMYAASLLEVE-----TGGILIAVEKLTTSHAIILYRGKNYRRPAKSSFSNLL 667
Query: 577 QERERLAKSLQ 587
+RE L +S++
Sbjct: 668 TKREALRRSIE 678
>sp|Q9LF10|CRS1_ARATH Chloroplastic group IIA intron splicing facilitator CRS1,
chloroplastic OS=Arabidopsis thaliana GN=At5g16180 PE=2
SV=2
Length = 720
Score = 311 bits (798), Expect = 1e-83, Method: Compositional matrix adjust.
Identities = 174/391 (44%), Positives = 250/391 (63%), Gaps = 7/391 (1%)
Query: 426 YEDEVEKLLDGLGPRYTDWPGCDPLPVDADMLPGIVPGYQPPFRVLPYGVRSTLARKEAT 485
YE E ++LLDGLGPRY DW P PVDAD+LP +V GY P R P R+ L +E T
Sbjct: 308 YEREADRLLDGLGPRYMDWWMRRPFPVDADLLPEVVNGYMTPSRRCPPNTRAKLTDEELT 367
Query: 486 NLQRLARVLPPHFALGRSRQLQGLAVAMIKLWEKSSIAKIALKRGVQLTTSERMVEDIKK 545
L+ +A+ LP HF LGR+ LQGLA A++KLWEK IAKIA+K G T +E M ++++
Sbjct: 368 YLRNIAQPLPFHFVLGRNYGLQGLASAIVKLWEKCIIAKIAIKWGALNTNNEEMADELRY 427
Query: 546 LTGGTLLSRNKDFLVFYRGKNFLSPDVTEALQERERLAKSLQDEEEQARLRASAF--VLP 603
LTGG L+ RNK +V YRGK+FLS +V + +++RERL Q EE R V+
Sbjct: 428 LTGGVLILRNKYLIVLYRGKDFLSDEVADLVEDRERLLSRYQHFEETKRESDIELLEVVT 487
Query: 604 SIETIEKSGTAGTLKETLDANSRWGKRLDDSHKENLVREAEVRRHAYLVQKLEKKLARAE 663
+ + ++++ +GTL E + ++G + NL EAE R ++ E KL+ +
Sbjct: 488 NGKQLKETNKSGTLLEFQELQRKFG----EMDPRNLETEAEKARLEKELKSQEHKLSILK 543
Query: 664 RKLLRAERALSKVEESLKPAERQADPESITDEERFMFRKLGLRMKAFLLLGRRGVFDGTV 723
K+ ++ L K+ KP+E D E +T+EER R++GL+M + L+LGRRGVF G +
Sbjct: 544 SKIEKSNMELFKLNSLWKPSEGDDDIEILTNEERECLRRIGLKMNSSLVLGRRGVFFGVM 603
Query: 724 ENMHLHWKYRELVKIIVKVKTFDQAKKIALALEAESGGVLVSVDKISKGYAMVVYRGKDY 783
E +H HWK+RE+ K+I K F + A ALE ES GVL+S++K+ +G+A+++YRGK+Y
Sbjct: 604 EGLHQHWKHREVAKVITMQKLFSRVVYTAKALETESNGVLISIEKLKEGHAILIYRGKNY 663
Query: 784 QRPST-LRPKNLLTKRKALARSIELQRQEAL 813
+RPS+ L +NLLTKRKAL RS+ +QR +L
Sbjct: 664 KRPSSKLMAQNLLTKRKALQRSVVMQRLGSL 694
Score = 69.7 bits (169), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 41/118 (34%), Positives = 66/118 (55%), Gaps = 7/118 (5%)
Query: 223 KFPWEKRKEEVAEGRWLVKR--RSSRTSLAELTLPESELRRLRNLTFQTKSKTRIKGAGL 280
K PWE+ +E R++++R + S + AEL L E L RLR + + ++ AG+
Sbjct: 179 KMPWEREEE-----RFILRRMKKESVPTTAELILDEGLLNRLRREASKMRKWVNVRKAGV 233
Query: 281 TQAVVDIIHEKWKTSEIVRLKIEGAPALNMKRMHEILERKTGGLVIWRSGTAVSLYRG 338
T+ VV+ I WK +E+ ++ + NM+R EI+E KTGGLV+ + +YRG
Sbjct: 234 TELVVNKIKSMWKLNELAMVRFDVPLCRNMERAQEIIEMKTGGLVVLSKKEFLVVYRG 291
Score = 37.0 bits (84), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 36/115 (31%), Positives = 52/115 (45%), Gaps = 11/115 (9%)
Query: 232 EVAEGRWLVKRRSSRTSLAELTLPESELRRLRN----LTFQTKSKTRIKGAGLTQAVVDI 287
EV G RR + A+LT + EL LRN L F GL A+V +
Sbjct: 341 EVVNGYMTPSRRCPPNTRAKLT--DEELTYLRNIAQPLPFHFVLGRNYGLQGLASAIVKL 398
Query: 288 IHEKWKTSEIVRLKIE-GAPALNMKRMHEILERKTGGLVIWRSGTAVSLYRGVSY 341
W+ I ++ I+ GA N + M + L TGG++I R+ + LYRG +
Sbjct: 399 ----WEKCIIAKIAIKWGALNTNNEEMADELRYLTGGVLILRNKYLIVLYRGKDF 449
Score = 35.8 bits (81), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 30/117 (25%), Positives = 56/117 (47%), Gaps = 20/117 (17%)
Query: 262 LRNLTFQTKSKTRIKGAGLTQAVVDIIHEKWKTSEIVRLKIEGAPALNMKRMH------- 314
LR + + S + G+ V++ +H+ WK E+ A + M+++
Sbjct: 580 LRRIGLKMNSSLVLGRRGVFFGVMEGLHQHWKHREV-------AKVITMQKLFSRVVYTA 632
Query: 315 EILERKTGGLVI----WRSGTAVSLYRGVSYEVPSVQLNKR--IYKRNELPASSVSQ 365
+ LE ++ G++I + G A+ +YRG +Y+ PS +L + + KR L S V Q
Sbjct: 633 KALETESNGVLISIEKLKEGHAILIYRGKNYKRPSSKLMAQNLLTKRKALQRSVVMQ 689
>sp|Q67XL4|Y3544_ARATH Uncharacterized CRM domain-containing protein At3g25440,
chloroplastic OS=Arabidopsis thaliana GN=At3g25440 PE=2
SV=1
Length = 444
Score = 115 bits (287), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 64/182 (35%), Positives = 111/182 (60%), Gaps = 6/182 (3%)
Query: 653 QKLEKKLARAERKLLRAERALSKVEESLKPAERQADPESITDEERFMFRKLGLRMKAFLL 712
+K+ KL +A +K R + K+E S + AE DPE +T EE F + K+GL+ K ++
Sbjct: 139 EKILNKLRKARKKEERLMETMKKLEPS-ESAETTHDPEILTPEEHFYYLKMGLKCKNYVP 197
Query: 713 LGRRGVFDGTVENMHLHWKYRELVKIIVKVKTFDQAKKIALALEAESGGVLVSVDKISKG 772
+GRRG++ G + NMHLHWK + +++++K T D+ K+IA+ L +GG+++ V +G
Sbjct: 198 VGRRGIYQGVILNMHLHWKKHQTLQVVIKTFTPDEVKEIAVELARLTGGIVLDV---HEG 254
Query: 773 YAMVVYRGKDYQRPST--LRPKNLLTKRKALARSIELQRQEALLKHVATLESNAGRLRSE 830
+++YRGK+Y +P T + P+ L ++KAL +S A+ K++ LE L+++
Sbjct: 255 NTIIMYRGKNYVQPPTEIMSPRITLPRKKALDKSKCRDALRAVRKYIPRLEQELQLLQAQ 314
Query: 831 IE 832
E
Sbjct: 315 AE 316
Score = 41.2 bits (95), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 32/113 (28%), Positives = 57/113 (50%), Gaps = 5/113 (4%)
Query: 497 HFALGRSRQLQGLAVAMIKLWEKSSIAKIALKRGVQLTTSERMVEDIKKLTGGTLLSRNK 556
+ +GR QG+ + M W+K ++ +K E VE + +LTGG +L ++
Sbjct: 195 YVPVGRRGIYQGVILNMHLHWKKHQTLQVVIKTFTPDEVKEIAVE-LARLTGGIVLDVHE 253
Query: 557 -DFLVFYRGKNFLSPDVTEALQERERLAKSLQDEEEQAR--LRASAFVLPSIE 606
+ ++ YRGKN++ P TE + R L + ++ + R LRA +P +E
Sbjct: 254 GNTIIMYRGKNYVQPP-TEIMSPRITLPRKKALDKSKCRDALRAVRKYIPRLE 305
Score = 39.3 bits (90), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 25/99 (25%), Positives = 48/99 (48%), Gaps = 2/99 (2%)
Query: 251 ELTLPESELRRLRNLTFQTKSKTRIKGAGLTQAVVDIIHEKWKTSEIVRLKIEGAPALNM 310
E+ PE L+ + + K+ + G+ Q V+ +H WK + +++ I+ +
Sbjct: 175 EILTPEEHFYYLK-MGLKCKNYVPVGRRGIYQGVILNMHLHWKKHQTLQVVIKTFTPDEV 233
Query: 311 KRMHEILERKTGGLVI-WRSGTAVSLYRGVSYEVPSVQL 348
K + L R TGG+V+ G + +YRG +Y P ++
Sbjct: 234 KEIAVELARLTGGIVLDVHEGNTIIMYRGKNYVQPPTEI 272
>sp|Q84N48|CAF2P_MAIZE CRS2-associated factor 2, chloroplastic OS=Zea mays GN=CAF2 PE=1
SV=1
Length = 611
Score = 65.1 bits (157), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 48/149 (32%), Positives = 72/149 (48%), Gaps = 14/149 (9%)
Query: 201 RGGFSKESPLG--LGEEVGSDGEVKFPWEKRKEEVA-----EGRWLVKRRSSRTSLAELT 253
R G +PLG + V + G + E+RK ++A +GR SR +
Sbjct: 181 RRGVRLHTPLGQETPQTVSAHGIMMEVRERRKMDLARVSPGDGR-------SREEVLGEP 233
Query: 254 LPESELRRLRNLTFQTKSKTRIKGAGLTQAVVDIIHEKWKTSEIVRLKIEGAPALNMKRM 313
L SE+R L + I GLT ++++IH W+ EI +++ G P ++MK +
Sbjct: 234 LTPSEVRALVKPHISHNRQLNIGRDGLTHNMLEMIHCHWRRQEICKVRCRGVPTVDMKNL 293
Query: 314 HEILERKTGGLVIWRSGTAVSLYRGVSYE 342
LE K+GG VI R G V LYRG Y+
Sbjct: 294 CYHLEEKSGGKVIHRVGGVVFLYRGRHYD 322
Score = 43.5 bits (101), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 46/95 (48%), Gaps = 6/95 (6%)
Query: 690 ESITDEERFMFRKLGLRMKAFLLLGRRGVFDGTVENMHLHWKYRELVKIIVK-VKTFDQA 748
E +T E K + L +GR G+ +E +H HW+ +E+ K+ + V T D
Sbjct: 232 EPLTPSEVRALVKPHISHNRQLNIGRDGLTHNMLEMIHCHWRRQEICKVRCRGVPTVDM- 290
Query: 749 KKIALALEAESGGVLVSVDKISKGYAMVVYRGKDY 783
K + LE +SGG ++ G + +YRG+ Y
Sbjct: 291 KNLCYHLEEKSGGKVIH----RVGGVVFLYRGRHY 321
Score = 34.7 bits (78), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 30/108 (27%), Positives = 50/108 (46%), Gaps = 8/108 (7%)
Query: 689 PESITDEERFMFRKLGLRMKAFLLLGRRGVFDGTVENMHLHWKYRELVKIIVKVKTFDQA 748
P+ T EE R+ G + L + G++ V+++ ++ +LVKI +
Sbjct: 349 PDGFTKEEADEMRRKGRDLLPICKLAKNGIYITLVKDVRDAFEGSDLVKIDCEGLNPSDY 408
Query: 749 KKIALALEAESGGVLVSVDKISKGYAMVVYRGKD----YQRPSTLRPK 792
KKI L VL+S D ++++RGK+ Y +P TL PK
Sbjct: 409 KKIGAKLRDLVPCVLLSFDD----EQILMHRGKEWKSRYSKPLTLIPK 452
>sp|Q6Z4U2|CAF1M_ORYSJ CRS2-associated factor 1, mitochondrial OS=Oryza sativa subsp.
japonica GN=Os08g0174900 PE=2 SV=1
Length = 428
Score = 63.5 bits (153), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 44/74 (59%)
Query: 268 QTKSKTRIKGAGLTQAVVDIIHEKWKTSEIVRLKIEGAPALNMKRMHEILERKTGGLVIW 327
+TK + + GLT +++ IH WK E VR+K G P ++M+ + LE KTGGL+I
Sbjct: 173 RTKKQINLGRDGLTHNMLNDIHNHWKNDEAVRVKCLGVPTVDMQNVCHQLEDKTGGLIIH 232
Query: 328 RSGTAVSLYRGVSY 341
R G + LYRG Y
Sbjct: 233 RHGGQLILYRGRHY 246
Score = 43.5 bits (101), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 30/97 (30%), Positives = 51/97 (52%), Gaps = 8/97 (8%)
Query: 690 ESITDEER-FMFRKL-GLRMKAFLLLGRRGVFDGTVENMHLHWKYRELVKI-IVKVKTFD 746
E +T ER F+ K R K + LGR G+ + ++H HWK E V++ + V T D
Sbjct: 155 EPLTPAERAFLVSKCQKSRTKKQINLGRDGLTHNMLNDIHNHWKNDEAVRVKCLGVPTVD 214
Query: 747 QAKKIALALEAESGGVLVSVDKISKGYAMVVYRGKDY 783
+ + LE ++GG+++ G +++YRG+ Y
Sbjct: 215 M-QNVCHQLEDKTGGLIIH----RHGGQLILYRGRHY 246
Score = 38.9 bits (89), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 33/111 (29%), Positives = 49/111 (44%), Gaps = 4/111 (3%)
Query: 673 LSKVEESLKPAERQADPESITDEERFMFRKLGLRMKAFLLLGRRGVFDGTVENMHLHWKY 732
L K E + P + E +T EE RK GL + L + G + V + +
Sbjct: 258 LWKPAEPVYPRLIKTTIEGLTVEETKEMRKKGLYVPVLTKLAKNGYYASLVPMVRDAFLT 317
Query: 733 RELVKIIVKVKTFDQAKKIALALEAESGGVLVSVDKISKGYAMVVYRGKDY 783
ELV+I K +KI + L ++VS DK ++V+RGKDY
Sbjct: 318 DELVRIDSKGLPKSDYRKIGVKLRDLVPCIIVSFDK----EQIIVWRGKDY 364
>sp|Q657G7|CAF2P_ORYSJ CRS2-associated factor 2, chloroplastic OS=Oryza sativa subsp.
japonica GN=Os01g0323300 PE=2 SV=1
Length = 607
Score = 62.4 bits (150), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 36/99 (36%), Positives = 52/99 (52%), Gaps = 1/99 (1%)
Query: 243 RSSRTSLAELTLPESELRRLRNLTFQTKSKTRIKGAGLTQAVVDIIHEKWKTSEIVRLKI 302
RS L E L +E+R L + I GLT ++++IH W+ EI +++
Sbjct: 220 RSREEVLGE-PLTAAEVRDLVKPHISHNRQLNIGRDGLTHNMLEMIHCHWRRQEICKVRC 278
Query: 303 EGAPALNMKRMHEILERKTGGLVIWRSGTAVSLYRGVSY 341
G P ++MK + LE K+GG VI R G V LYRG +Y
Sbjct: 279 RGVPTVDMKNLCYHLEEKSGGKVIHRVGGVVFLYRGRNY 317
Score = 43.9 bits (102), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 47/86 (54%), Gaps = 8/86 (9%)
Query: 711 LLLGRRGVFDGTVENMHLHWKYRELVKIIVK-VKTFDQAKKIALALEAESGGVLVSVDKI 769
L +GR G+ +E +H HW+ +E+ K+ + V T D K + LE +SGG ++
Sbjct: 249 LNIGRDGLTHNMLEMIHCHWRRQEICKVRCRGVPTVDM-KNLCYHLEEKSGGKVIH---- 303
Query: 770 SKGYAMVVYRGKDYQRPSTLRPKNLL 795
G + +YRG++Y P T RP+ L
Sbjct: 304 RVGGVVFLYRGRNYN-PRT-RPRYPL 327
Score = 37.4 bits (85), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 35/124 (28%), Positives = 55/124 (44%), Gaps = 8/124 (6%)
Query: 673 LSKVEESLKPAERQADPESITDEERFMFRKLGLRMKAFLLLGRRGVFDGTVENMHLHWKY 732
L K + P Q PE +T EE R+ G + L + G++ V ++ ++
Sbjct: 329 LWKPATPVYPKLIQEAPEGLTKEEADEMRRRGKDLLPICKLAKNGIYIYLVRDVRDAFEG 388
Query: 733 RELVKIIVKVKTFDQAKKIALALEAESGGVLVSVDKISKGYAMVVYRGKD----YQRPST 788
+LVKI + KKI L VL+S D ++++RGK+ Y +P T
Sbjct: 389 SDLVKIDCEGLNPSDYKKIGAKLRDLVPCVLLSFDN----EQILMFRGKEWKSRYPKPLT 444
Query: 789 LRPK 792
L PK
Sbjct: 445 LIPK 448
>sp|Q0J7J7|CAF2M_ORYSJ CRS2-associated factor 2, mitochondrial OS=Oryza sativa subsp.
japonica GN=Os08g0188000 PE=2 SV=2
Length = 366
Score = 60.8 bits (146), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 41/125 (32%), Positives = 61/125 (48%), Gaps = 2/125 (1%)
Query: 220 GEVKFPWEKRKEEVAEGRWLVKRRSSRTSLAELTLPESELRRL--RNLTFQTKSKTRIKG 277
G + PW+ A G +SR + L E E+ +L R + +
Sbjct: 111 GRLDRPWDGVAAAAARGEGAGAAATSREEVLGEPLAEEEVAQLVERYRHSDCSRQINLGK 170
Query: 278 AGLTQAVVDIIHEKWKTSEIVRLKIEGAPALNMKRMHEILERKTGGLVIWRSGTAVSLYR 337
G+T ++D IH WK +E VR+K G P L+M + LE KTGG VI+R+ + LYR
Sbjct: 171 GGVTHNMIDDIHNHWKRAEAVRIKCLGVPTLDMDNICFHLEDKTGGKVIYRNINILILYR 230
Query: 338 GVSYE 342
G +Y+
Sbjct: 231 GRNYD 235
Score = 41.6 bits (96), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 43/78 (55%), Gaps = 9/78 (11%)
Query: 713 LGRRGVFDGTVENMHLHWKYRELVKI-IVKVKTFDQAKKIALALEAESGGVLVSVDKISK 771
LG+ GV ++++H HWK E V+I + V T D I LE ++GG ++ +
Sbjct: 168 LGKGGVTHNMIDDIHNHWKRAEAVRIKCLGVPTLDM-DNICFHLEDKTGGKVIYRNI--- 223
Query: 772 GYAMVVYRGKDY---QRP 786
+++YRG++Y QRP
Sbjct: 224 -NILILYRGRNYDPKQRP 240
>sp|Q8VYD9|CAF1M_ARATH CRS2-associated factor 1, mitochondrial OS=Arabidopsis thaliana
GN=At4g31010 PE=2 SV=1
Length = 405
Score = 59.3 bits (142), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 36/104 (34%), Positives = 58/104 (55%), Gaps = 2/104 (1%)
Query: 241 KRRSSRTSLAELTLPESELRRLRNLTFQTKSKTRIKGA--GLTQAVVDIIHEKWKTSEIV 298
KRR R + +L E+E + L L + K+K ++ GLT +++ ++ WK +E V
Sbjct: 146 KRRKVREKIQGASLTEAERKFLVELCQRNKTKRQVNLGRDGLTHNMLNDVYNHWKHAEAV 205
Query: 299 RLKIEGAPALNMKRMHEILERKTGGLVIWRSGTAVSLYRGVSYE 342
R+K G P L+MK + LE KT G V+ + + LYRG +Y+
Sbjct: 206 RVKCLGVPTLDMKNVIFHLEDKTFGQVVSKHSGTLVLYRGRNYD 249
Score = 42.4 bits (98), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 33/112 (29%), Positives = 57/112 (50%), Gaps = 8/112 (7%)
Query: 675 KVEESLKPAERQADPESITDEERFMFRKLGLRMKAF--LLLGRRGVFDGTVENMHLHWKY 732
K+EE + + S+T+ ER +L R K + LGR G+ + +++ HWK+
Sbjct: 142 KLEEKRRKVREKIQGASLTEAERKFLVELCQRNKTKRQVNLGRDGLTHNMLNDVYNHWKH 201
Query: 733 RELVKI-IVKVKTFDQAKKIALALEAESGGVLVSVDKISKGYAMVVYRGKDY 783
E V++ + V T D K + LE ++ G +VS +V+YRG++Y
Sbjct: 202 AEAVRVKCLGVPTLDM-KNVIFHLEDKTFGQVVS----KHSGTLVLYRGRNY 248
Score = 37.4 bits (85), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 32/114 (28%), Positives = 50/114 (43%), Gaps = 4/114 (3%)
Query: 673 LSKVEESLKPAERQADPESITDEERFMFRKLGLRMKAFLLLGRRGVFDGTVENMHLHWKY 732
L K E + P + + ++ +E RK GL + A L + G + V + +
Sbjct: 260 LWKPHEPVYPRLIKTTIDGLSIDETKAMRKKGLAVPALTKLAKNGYYGSLVPMVRDAFLV 319
Query: 733 RELVKIIVKVKTFDQAKKIALALEAESGGVLVSVDKISKGYAMVVYRGKDYQRP 786
ELV+I KKI L +LV+ DK +V++RGKDY+ P
Sbjct: 320 SELVRIDCLGLERKDYKKIGAKLRDLVPCILVTFDK----EQVVIWRGKDYKPP 369
>sp|Q9FFU1|CAF2M_ARATH CRS2-associated factor 2, mitochondrial OS=Arabidopsis thaliana
GN=At5g54890 PE=2 SV=1
Length = 358
Score = 58.9 bits (141), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 26/65 (40%), Positives = 41/65 (63%)
Query: 278 AGLTQAVVDIIHEKWKTSEIVRLKIEGAPALNMKRMHEILERKTGGLVIWRSGTAVSLYR 337
G+T ++D IH WK +E VR+K G P L+M + LE K+GG +++R+ + LYR
Sbjct: 169 GGVTHNMIDDIHNHWKKAEAVRIKCLGVPTLDMDNICFHLEEKSGGKIVYRNINILVLYR 228
Query: 338 GVSYE 342
G +Y+
Sbjct: 229 GRNYD 233
Score = 42.0 bits (97), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 39/72 (54%), Gaps = 6/72 (8%)
Query: 713 LGRRGVFDGTVENMHLHWKYRELVKI-IVKVKTFDQAKKIALALEAESGGVLVSVDKISK 771
LG+ GV ++++H HWK E V+I + V T D I LE +SGG +V
Sbjct: 166 LGKGGVTHNMIDDIHNHWKKAEAVRIKCLGVPTLDM-DNICFHLEEKSGGKIVY----RN 220
Query: 772 GYAMVVYRGKDY 783
+V+YRG++Y
Sbjct: 221 INILVLYRGRNY 232
>sp|Q9LDA9|CAF2P_ARATH CRS2-associated factor 2, chloroplastic OS=Arabidopsis thaliana
GN=At1g23400 PE=2 SV=1
Length = 564
Score = 58.5 bits (140), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 39/63 (61%)
Query: 279 GLTQAVVDIIHEKWKTSEIVRLKIEGAPALNMKRMHEILERKTGGLVIWRSGTAVSLYRG 338
G T ++++IH WK + +++ +G P ++M + +LE KTGG +I R G V L+RG
Sbjct: 228 GFTHNMLELIHSHWKRRRVCKVRCKGVPTVDMNNVCRVLEEKTGGEIIHRVGGVVYLFRG 287
Query: 339 VSY 341
+Y
Sbjct: 288 RNY 290
Score = 38.9 bits (89), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 37/72 (51%), Gaps = 6/72 (8%)
Query: 713 LGRRGVFDGTVENMHLHWKYRELVKIIVK-VKTFDQAKKIALALEAESGGVLVSVDKISK 771
LGR G +E +H HWK R + K+ K V T D + LE ++GG ++
Sbjct: 224 LGRDGFTHNMLELIHSHWKRRRVCKVRCKGVPTVDM-NNVCRVLEEKTGGEIIH----RV 278
Query: 772 GYAMVVYRGKDY 783
G + ++RG++Y
Sbjct: 279 GGVVYLFRGRNY 290
Score = 36.2 bits (82), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 29/112 (25%), Positives = 51/112 (45%), Gaps = 4/112 (3%)
Query: 673 LSKVEESLKPAERQADPESITDEERFMFRKLGLRMKAFLLLGRRGVFDGTVENMHLHWKY 732
L K + P Q PE +T EE FR G ++ L + GV+ V+++ ++
Sbjct: 302 LWKPAAPVYPKLIQEVPEGLTKEEAHEFRVKGKSLRPICKLSKNGVYVSLVKDVRDAFEL 361
Query: 733 RELVKIIVKVKTFDQAKKIALALEAESGGVLVSVDKISKGYAMVVYRGKDYQ 784
LVK+ KKI L+ VL+S D ++++RG++++
Sbjct: 362 SSLVKVDCPGLEPSDYKKIGAKLKELVPCVLLSFDD----EQILMWRGREWK 409
>sp|Q9SL79|CAF1P_ARATH CRS2-associated factor 1, chloroplastic OS=Arabidopsis thaliana
GN=At2g20020 PE=1 SV=2
Length = 701
Score = 58.2 bits (139), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 49/88 (55%)
Query: 254 LPESELRRLRNLTFQTKSKTRIKGAGLTQAVVDIIHEKWKTSEIVRLKIEGAPALNMKRM 313
L + E+R L +T + + GLT +++ IH+ WK + ++K +G ++M +
Sbjct: 243 LTKEEVRELVTSCLKTTRQLNMGRDGLTHNMLNNIHDLWKRRRVCKIKCKGVCTVDMDNV 302
Query: 314 HEILERKTGGLVIWRSGTAVSLYRGVSY 341
E LE K GG VI+R G + L+RG +Y
Sbjct: 303 CEQLEEKIGGKVIYRRGGVLFLFRGRNY 330
Score = 40.0 bits (92), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 42/142 (29%), Positives = 63/142 (44%), Gaps = 13/142 (9%)
Query: 690 ESITDEERFMFRKLGLRMKAFLLLGRRGVFDGTVENMHLHWKYRELVKIIVK-VKTFDQA 748
E +T EE L+ L +GR G+ + N+H WK R + KI K V T D
Sbjct: 241 EPLTKEEVRELVTSCLKTTRQLNMGRDGLTHNMLNNIHDLWKRRRVCKIKCKGVCTVDM- 299
Query: 749 KKIALALEAESGGVLVSVDKISKGYAMVVYRGKDYQRPSTLRPKNLLTKRKALA----RS 804
+ LE + GG ++ +G + ++RG++Y RP+ L K +A R
Sbjct: 300 DNVCEQLEEKIGGKVI----YRRGGVLFLFRGRNYNH--RTRPRFPLMLWKPVAPVYPRL 353
Query: 805 IELQRQEALLKHVATLESNAGR 826
I+ Q E L + AT GR
Sbjct: 354 IQ-QVPEGLTRQEATNMRRKGR 374
Score = 38.5 bits (88), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 26/99 (26%), Positives = 49/99 (49%), Gaps = 4/99 (4%)
Query: 686 QADPESITDEERFMFRKLGLRMKAFLLLGRRGVFDGTVENMHLHWKYRELVKIIVKVKTF 745
Q PE +T +E R+ G + LG+ GV+ V+N+ ++ ELV+I +
Sbjct: 355 QQVPEGLTRQEATNMRRKGRELMPICKLGKNGVYCDLVKNVKEAFEVCELVRIDCQGMKG 414
Query: 746 DQAKKIALALEAESGGVLVSVDKISKGYAMVVYRGKDYQ 784
+KI L+ VLVS + ++++RG++++
Sbjct: 415 SDFRKIGAKLKDLVPCVLVSFE----NEQILIWRGREWK 449
Score = 35.0 bits (79), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 37/77 (48%), Gaps = 9/77 (11%)
Query: 499 ALGRSRQLQ----GLAVAMIK----LWEKSSIAKIALKRGVQLTTSERMVEDIKKLTGGT 550
L +RQL GL M+ LW++ + KI K GV + + E +++ GG
Sbjct: 255 CLKTTRQLNMGRDGLTHNMLNNIHDLWKRRRVCKIKCK-GVCTVDMDNVCEQLEEKIGGK 313
Query: 551 LLSRNKDFLVFYRGKNF 567
++ R L +RG+N+
Sbjct: 314 VIYRRGGVLFLFRGRNY 330
Score = 33.1 bits (74), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 27/110 (24%), Positives = 54/110 (49%), Gaps = 5/110 (4%)
Query: 460 IVPGYQPPFRVLPYGVRSTLARKEATNLQRLARVLPPHFALGRSRQLQGLAVAMIKLWEK 519
+ P Y + +P G L R+EATN++R R L P LG++ L + + +E
Sbjct: 346 VAPVYPRLIQQVPEG----LTRQEATNMRRKGRELMPICKLGKNGVYCDLVKNVKEAFEV 401
Query: 520 SSIAKIALKRGVQLTTSERMVEDIKKLTGGTLLSRNKDFLVFYRGKNFLS 569
+ +I + G++ + ++ +K L L+S + ++ +RG+ + S
Sbjct: 402 CELVRIDCQ-GMKGSDFRKIGAKLKDLVPCVLVSFENEQILIWRGREWKS 450
>sp|Q5VMQ5|CAF1P_ORYSJ CRS2-associated factor 1, chloroplastic OS=Oryza sativa subsp.
japonica GN=Os01g0495900 PE=2 SV=1
Length = 701
Score = 57.8 bits (138), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 31/98 (31%), Positives = 51/98 (52%)
Query: 244 SSRTSLAELTLPESELRRLRNLTFQTKSKTRIKGAGLTQAVVDIIHEKWKTSEIVRLKIE 303
+SR + L + E+ L T +TK + I GLT +++ IH WK + ++K +
Sbjct: 175 ASREEVLGEPLTKEEVDELVKATLKTKRQLNIGRDGLTHNMLENIHSHWKRKRVCKIKCK 234
Query: 304 GAPALNMKRMHEILERKTGGLVIWRSGTAVSLYRGVSY 341
G ++M + + LE K GG VI G + L+RG +Y
Sbjct: 235 GVCTVDMDNVCQQLEEKVGGKVIHHQGGVIFLFRGRNY 272
Score = 48.1 bits (113), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 31/95 (32%), Positives = 49/95 (51%), Gaps = 6/95 (6%)
Query: 690 ESITDEERFMFRKLGLRMKAFLLLGRRGVFDGTVENMHLHWKYRELVKIIVK-VKTFDQA 748
E +T EE K L+ K L +GR G+ +EN+H HWK + + KI K V T D
Sbjct: 183 EPLTKEEVDELVKATLKTKRQLNIGRDGLTHNMLENIHSHWKRKRVCKIKCKGVCTVDM- 241
Query: 749 KKIALALEAESGGVLVSVDKISKGYAMVVYRGKDY 783
+ LE + GG ++ +G + ++RG++Y
Sbjct: 242 DNVCQQLEEKVGGKVIH----HQGGVIFLFRGRNY 272
>sp|Q84N49|CAF1P_MAIZE CRS2-associated factor 1, chloroplastic OS=Zea mays GN=CAF1 PE=1
SV=1
Length = 674
Score = 55.1 bits (131), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 29/97 (29%), Positives = 50/97 (51%)
Query: 245 SRTSLAELTLPESELRRLRNLTFQTKSKTRIKGAGLTQAVVDIIHEKWKTSEIVRLKIEG 304
SR + L + E+ L + ++K + + GLT +++ IH WK + ++K +G
Sbjct: 176 SREDILGEPLTKEEVSELVKGSLKSKRQLNMGRDGLTHNMLENIHSHWKRKRVCKIKCKG 235
Query: 305 APALNMKRMHEILERKTGGLVIWRSGTAVSLYRGVSY 341
++M + LE K GG VI R G + L+RG +Y
Sbjct: 236 VCTIDMDNICHQLEEKVGGKVIHRQGGVIFLFRGRNY 272
Score = 48.5 bits (114), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 32/95 (33%), Positives = 49/95 (51%), Gaps = 6/95 (6%)
Query: 690 ESITDEERFMFRKLGLRMKAFLLLGRRGVFDGTVENMHLHWKYRELVKIIVK-VKTFDQA 748
E +T EE K L+ K L +GR G+ +EN+H HWK + + KI K V T D
Sbjct: 183 EPLTKEEVSELVKGSLKSKRQLNMGRDGLTHNMLENIHSHWKRKRVCKIKCKGVCTIDM- 241
Query: 749 KKIALALEAESGGVLVSVDKISKGYAMVVYRGKDY 783
I LE + GG ++ +G + ++RG++Y
Sbjct: 242 DNICHQLEEKVGGKVIH----RQGGVIFLFRGRNY 272
Score = 34.3 bits (77), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 51/255 (20%), Positives = 101/255 (39%), Gaps = 46/255 (18%)
Query: 689 PESITDEERFMFRKLGLRMKAFLLLGRRGVFDGTVENMHLHWKYRELVKIIVKVKTFDQA 748
P +T +E R G ++ LG+ GV+ V + ++ +LV++
Sbjct: 300 PGGLTPDEATEMRTRGHQLPPICKLGKNGVYANLVNQVREAFEACDLVRVDCSGLNKSDC 359
Query: 749 KKIALALEAESGGVLVSVDKISKGYAMVVYRGKDYQRPSTLRPKNLLTKRKALARSIELQ 808
+KI L+ +L+S + ++++RG D++ S+L P L S E+
Sbjct: 360 RKIGAKLKDLVPCILLSFE----FEHILMWRGSDWK--SSLPP---------LENSYEVT 404
Query: 809 RQEALLKHVATLESNAGRLRSEIEQMNSVKGTGDEQLYDKLDSAYATEDDDSEDEGDEAY 868
+ + ES +G+ E V +G+ +L SA + + + DEG E +
Sbjct: 405 KVQ---------ESFSGK-----ESNEKVTHSGNVLAQIELVSAATSHKNWNLDEGQEKF 450
Query: 869 LEMYAGGNDNEDEIDNSTHNL------------EMESDFPYHAQDQESETELMDSESEAY 916
+ + + D + NS ++ E +D P ++MD
Sbjct: 451 KD-----STDSDMVLNSAKDVPALFHSTGISRTEPSADIPLEYSPLNPVCDIMDPSLNCR 505
Query: 917 TVHSTYCASTDIVEE 931
++ + C S +VE+
Sbjct: 506 SIPTNNCESRALVEK 520
>sp|Q9WX76|RRF_THET8 Ribosome-recycling factor OS=Thermus thermophilus (strain HB8 /
ATCC 27634 / DSM 579) GN=frr PE=1 SV=1
Length = 185
Score = 33.5 bits (75), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 30/117 (25%), Positives = 48/117 (41%), Gaps = 10/117 (8%)
Query: 309 NMKRMHEILERKTGGLVIWRSGTAVSLYRGVSYEVPSVQLNKRIYKRNELPASSVSQATD 368
+M++ E+LE GL R+ A+ L+ V Y V LN+ P + V Q+ D
Sbjct: 13 HMQKSLEVLEHNLAGLRTGRANPALLLHLKVEYYGAHVPLNQIATVTAPDPRTLVVQSWD 72
Query: 369 KQIHKQISMSGNSLSAAADKTAQDPSNFDSYNNVHATQVNLETASEEQETDFVREVK 425
+ N+L A + N A +N+ +EE+ D VR V+
Sbjct: 73 Q----------NALKAIEKAIRDSDLGLNPSNKGDALYINIPPLTEERRKDLVRAVR 119
>sp|Q72KE0|RRF_THET2 Ribosome-recycling factor OS=Thermus thermophilus (strain HB27 /
ATCC BAA-163 / DSM 7039) GN=frr PE=3 SV=1
Length = 185
Score = 33.5 bits (75), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 30/117 (25%), Positives = 48/117 (41%), Gaps = 10/117 (8%)
Query: 309 NMKRMHEILERKTGGLVIWRSGTAVSLYRGVSYEVPSVQLNKRIYKRNELPASSVSQATD 368
+M++ E+LE GL R+ A+ L+ V Y V LN+ P + V Q+ D
Sbjct: 13 HMQKSLEVLEHNLAGLRTGRANPALLLHLKVEYYGAHVPLNQIATVTAPDPRTLVVQSWD 72
Query: 369 KQIHKQISMSGNSLSAAADKTAQDPSNFDSYNNVHATQVNLETASEEQETDFVREVK 425
+ N+L A + N A +N+ +EE+ D VR V+
Sbjct: 73 Q----------NALKAIEKAIRDSDLGLNPSNKGDALYINIPPLTEERRKDLVRAVR 119
>sp|Q3IJ53|IF2_PSEHT Translation initiation factor IF-2 OS=Pseudoalteromonas
haloplanktis (strain TAC 125) GN=infB PE=3 SV=1
Length = 886
Score = 33.1 bits (74), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 49/185 (26%), Positives = 83/185 (44%), Gaps = 12/185 (6%)
Query: 515 KLWEKSSIAKIALKRGVQLTTSER--MVEDIKKLTGGT--------LLSRNKDFLVFYRG 564
KL ++ S A I + G +T +E+ +++ + K GGT L R + G
Sbjct: 19 KLLQQFSQAGITKQAGESVTEAEKATLLDHLSKQHGGTGSDGPARMTLQRKSKSTLSVTG 78
Query: 565 KNFLSPDVTEALQERERLAKSLQDEEEQARLRASAFVLPSIETIEKSGT-AGTLKETLDA 623
+ V +++ K E+EQ LR +A +E +K+ A LK +A
Sbjct: 79 STGKAKSVQVEVRKTRTYVKKSAMEQEQEELRLAAEEKLRLEEQQKAAQEAAELKAKQEA 138
Query: 624 NSRWGKRLDDSHKENLVREAEVRRHAYLVQKLEKKLARAERKLLRAERALSKVEE-SLKP 682
+ + D KE R+A+ R A Q ++ A++E+ + AER + EE +LK
Sbjct: 139 ERKAKEDADRKAKEEAKRKADAERKAKQKQMTPEQSAKSEKDRIEAERLQKEAEEAALKK 198
Query: 683 AERQA 687
AE +A
Sbjct: 199 AEEEA 203
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.314 0.131 0.373
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 355,528,542
Number of Sequences: 539616
Number of extensions: 16315686
Number of successful extensions: 52230
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 42
Number of HSP's successfully gapped in prelim test: 323
Number of HSP's that attempted gapping in prelim test: 50946
Number of HSP's gapped (non-prelim): 1438
length of query: 936
length of database: 191,569,459
effective HSP length: 127
effective length of query: 809
effective length of database: 123,038,227
effective search space: 99537925643
effective search space used: 99537925643
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 66 (30.0 bits)