Query 002316
Match_columns 936
No_of_seqs 352 out of 1007
Neff 3.8
Searched_HMMs 29240
Date Mon Mar 25 21:25:55 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002316.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/002316hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1jo0_A Hypothetical protein HI 99.9 2E-26 6.9E-31 211.3 12.7 88 253-340 2-89 (98)
2 1rq8_A Conserved hypothetical 99.9 2.4E-26 8.3E-31 212.8 13.2 96 691-791 1-96 (104)
3 1rq8_A Conserved hypothetical 99.9 3.4E-26 1.2E-30 211.9 12.9 88 253-340 1-88 (104)
4 1jo0_A Hypothetical protein HI 99.9 6.7E-26 2.3E-30 207.9 13.2 95 691-791 2-96 (98)
5 3ka5_A Ribosome-associated pro 64.2 14 0.0005 31.9 6.2 49 296-344 1-52 (65)
6 3k2t_A LMO2511 protein; lister 48.5 15 0.0005 30.9 3.6 48 296-343 1-51 (57)
7 3lyv_A Ribosome-associated fac 43.8 17 0.00059 31.5 3.4 49 296-344 2-53 (66)
8 3rrk_A V-type ATPase 116 kDa s 23.3 6.8E+02 0.023 26.4 15.0 33 646-678 102-137 (357)
9 1fxk_A Prefoldin; archaeal pro 23.3 3.8E+02 0.013 23.6 8.9 68 746-835 32-99 (107)
10 2e6x_A TT1592, hypothetical pr 22.5 34 0.0012 29.8 1.6 17 315-331 3-19 (69)
11 2zqm_A Prefoldin beta subunit 20.3 3.8E+02 0.013 23.9 8.3 67 747-835 38-104 (117)
No 1
>1jo0_A Hypothetical protein HI1333; structural genomics, YHBY_HAEI structure 2 function project, S2F, unknown function; 1.37A {Haemophilus influenzae} SCOP: d.68.4.1 PDB: 1ln4_A
Probab=99.94 E-value=2e-26 Score=211.31 Aligned_cols=88 Identities=23% Similarity=0.353 Sum_probs=86.5
Q ss_pred CCCHHHHHHHHhhhcCCCCeEEeCCCCCCHHHHHHHHHHHHhCCeEEEEecCCChhhHHHHHHHHHHHhCCeEEEEECcE
Q 002316 253 TLPESELRRLRNLTFQTKSKTRIKGAGLTQAVVDIIHEKWKTSEIVRLKIEGAPALNMKRMHEILERKTGGLVIWRSGTA 332 (936)
Q Consensus 253 tLt~kErr~LR~lAh~LkPvV~IGK~GLTd~VVeeI~~awekhELVKVKv~~~~~~dmk~~ae~LeekTGgeVVqrIG~v 332 (936)
+||++|+++||++||+|+|+|+|||+|||++|+++|+++|++||||||+|++++..+++++|++|+++|||++||+||++
T Consensus 2 ~Lt~kqr~~Lr~~ah~l~pvv~IGk~GlT~~vi~ei~~aL~~~ELIKVkvl~~~~~~~~e~a~~la~~t~a~~Vq~IG~~ 81 (98)
T 1jo0_A 2 TLSTKQKQFLKGLAHHLNPVVMLGGNGLTEGVLAEIENALNHHELIKVKVAGADRETKQLIINAIVRETKAAQVQTIGHI 81 (98)
T ss_dssp CCCHHHHHHHHHHHTTBCCSEEECTTCSCHHHHHHHHHHHHHHSEEEEEETTCCHHHHHHHHHHHHHHHCCEEEEEETTE
T ss_pred CCCHHHHHHHHHHhcCCCCeEEECCCCCCHHHHHHHHHHHHHCCeEEEEEeCCCHHHHHHHHHHHHHHhCCEEEEEECCE
Confidence 69999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEecCCC
Q 002316 333 VSLYRGVS 340 (936)
Q Consensus 333 iVLYRg~n 340 (936)
+||||+++
T Consensus 82 ~vLyR~~~ 89 (98)
T 1jo0_A 82 LVLYRPSE 89 (98)
T ss_dssp EEEECCCS
T ss_pred EEEEccCC
Confidence 99999984
No 2
>1rq8_A Conserved hypothetical protein; structural genomics, SAV1595, YHBY, UPF0044, unknown function; NMR {Staphylococcus aureus} SCOP: d.68.4.1
Probab=99.94 E-value=2.4e-26 Score=212.83 Aligned_cols=96 Identities=23% Similarity=0.419 Sum_probs=91.2
Q ss_pred CCCHHHHHHHHhcccCCCceEEeCCCCCCHHHHHHHHHHHHhcCeEeEEEcCCCHHHHHHHHHHHHHHhCCEEEeccccc
Q 002316 691 SITDEERFMFRKLGLRMKAFLLLGRRGVFDGTVENMHLHWKYRELVKIIVKVKTFDQAKKIALALEAESGGVLVSVDKIS 770 (936)
Q Consensus 691 ~LT~eER~~LRklghkLKpvV~IGKrGVtdgVIeeIh~aLk~hELVKVkv~~~~~~d~keiA~~Le~~SGg~lVqV~k~~ 770 (936)
|||++||++||++||+|+|+|+||++|||++||++|+.+|++||||||+|.+++.++++++|+.||+.|||++|| +
T Consensus 1 mLt~kqr~~LR~~ah~Lkpvv~IGK~GlTe~vi~ei~~aL~~hELIKVkvl~~~~~d~~e~a~~la~~t~a~vVq----~ 76 (104)
T 1rq8_A 1 MLTGKQKRYLRSLAHNIDPIFQIGKGGINENMIKQIDDTLENRELIKVHVLQNNFDDKKELAETLSEATRSELVQ----V 76 (104)
T ss_dssp CCCHHHHHHHHHHTTSSCCSCEECSSSCCHHHHHHHHHHHHHSSEEEEEECCCCHHHHHHHHHHHHHHHTEEEEE----E
T ss_pred CCCHHHHHHHHHHhcCCCCeEEECCCCCCHHHHHHHHHHHHHCCcEEEEEeCCCHHHHHHHHHHHHHHhCCEEEE----E
Confidence 799999999999999999999999999999999999999999999999999999999999999999999999999 6
Q ss_pred cccEEEEEecCCCCCCCcCCC
Q 002316 771 KGYAMVVYRGKDYQRPSTLRP 791 (936)
Q Consensus 771 IG~tiILYRgkNY~rP~~l~P 791 (936)
||+++||||++. ..|....|
T Consensus 77 IG~~~VLYR~~~-~~~~i~~~ 96 (104)
T 1rq8_A 77 IGSMIVIYRESK-ENKEIELP 96 (104)
T ss_dssp ETTEEEEEECCC-SCCSCCCC
T ss_pred ECCEEEEEeCCC-CCCceecc
Confidence 999999999976 55665555
No 3
>1rq8_A Conserved hypothetical protein; structural genomics, SAV1595, YHBY, UPF0044, unknown function; NMR {Staphylococcus aureus} SCOP: d.68.4.1
Probab=99.93 E-value=3.4e-26 Score=211.85 Aligned_cols=88 Identities=18% Similarity=0.316 Sum_probs=86.8
Q ss_pred CCCHHHHHHHHhhhcCCCCeEEeCCCCCCHHHHHHHHHHHHhCCeEEEEecCCChhhHHHHHHHHHHHhCCeEEEEECcE
Q 002316 253 TLPESELRRLRNLTFQTKSKTRIKGAGLTQAVVDIIHEKWKTSEIVRLKIEGAPALNMKRMHEILERKTGGLVIWRSGTA 332 (936)
Q Consensus 253 tLt~kErr~LR~lAh~LkPvV~IGK~GLTd~VVeeI~~awekhELVKVKv~~~~~~dmk~~ae~LeekTGgeVVqrIG~v 332 (936)
|||++|+++||++||+|+|+|+|||+|||++|+++|+++|++||||||||++++..+++++|++|+++|||++||+||++
T Consensus 1 mLt~kqr~~LR~~ah~Lkpvv~IGK~GlTe~vi~ei~~aL~~hELIKVkvl~~~~~d~~e~a~~la~~t~a~vVq~IG~~ 80 (104)
T 1rq8_A 1 MLTGKQKRYLRSLAHNIDPIFQIGKGGINENMIKQIDDTLENRELIKVHVLQNNFDDKKELAETLSEATRSELVQVIGSM 80 (104)
T ss_dssp CCCHHHHHHHHHHTTSSCCSCEECSSSCCHHHHHHHHHHHHHSSEEEEEECCCCHHHHHHHHHHHHHHHTEEEEEEETTE
T ss_pred CCCHHHHHHHHHHhcCCCCeEEECCCCCCHHHHHHHHHHHHHCCcEEEEEeCCCHHHHHHHHHHHHHHhCCEEEEEECCE
Confidence 69999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEecCCC
Q 002316 333 VSLYRGVS 340 (936)
Q Consensus 333 iVLYRg~n 340 (936)
+||||+++
T Consensus 81 ~VLYR~~~ 88 (104)
T 1rq8_A 81 IVIYRESK 88 (104)
T ss_dssp EEEEECCC
T ss_pred EEEEeCCC
Confidence 99999986
No 4
>1jo0_A Hypothetical protein HI1333; structural genomics, YHBY_HAEI structure 2 function project, S2F, unknown function; 1.37A {Haemophilus influenzae} SCOP: d.68.4.1 PDB: 1ln4_A
Probab=99.93 E-value=6.7e-26 Score=207.86 Aligned_cols=95 Identities=19% Similarity=0.350 Sum_probs=89.2
Q ss_pred CCCHHHHHHHHhcccCCCceEEeCCCCCCHHHHHHHHHHHHhcCeEeEEEcCCCHHHHHHHHHHHHHHhCCEEEeccccc
Q 002316 691 SITDEERFMFRKLGLRMKAFLLLGRRGVFDGTVENMHLHWKYRELVKIIVKVKTFDQAKKIALALEAESGGVLVSVDKIS 770 (936)
Q Consensus 691 ~LT~eER~~LRklghkLKpvV~IGKrGVtdgVIeeIh~aLk~hELVKVkv~~~~~~d~keiA~~Le~~SGg~lVqV~k~~ 770 (936)
+||++||++||++||+|+|+|+||++|||++|+++|+.||++||||||+|.+++.++++++|++||+.|||++|| +
T Consensus 2 ~Lt~kqr~~Lr~~ah~l~pvv~IGk~GlT~~vi~ei~~aL~~~ELIKVkvl~~~~~~~~e~a~~la~~t~a~~Vq----~ 77 (98)
T 1jo0_A 2 TLSTKQKQFLKGLAHHLNPVVMLGGNGLTEGVLAEIENALNHHELIKVKVAGADRETKQLIINAIVRETKAAQVQ----T 77 (98)
T ss_dssp CCCHHHHHHHHHHHTTBCCSEEECTTCSCHHHHHHHHHHHHHHSEEEEEETTCCHHHHHHHHHHHHHHHCCEEEE----E
T ss_pred CCCHHHHHHHHHHhcCCCCeEEECCCCCCHHHHHHHHHHHHHCCeEEEEEeCCCHHHHHHHHHHHHHHhCCEEEE----E
Confidence 699999999999999999999999999999999999999999999999999999999999999999999999999 7
Q ss_pred cccEEEEEecCCCCCCCcCCC
Q 002316 771 KGYAMVVYRGKDYQRPSTLRP 791 (936)
Q Consensus 771 IG~tiILYRgkNY~rP~~l~P 791 (936)
||+++||||++.. |....|
T Consensus 78 IG~~~vLyR~~~~--~~i~lp 96 (98)
T 1jo0_A 78 IGHILVLYRPSEE--AKIQLP 96 (98)
T ss_dssp ETTEEEEECCCSS--CCBCCC
T ss_pred ECCEEEEEccCCC--CCcCCC
Confidence 9999999998743 444444
No 5
>3ka5_A Ribosome-associated protein Y (PSRP-1); structural genomics, PSI-2, protein structure initiative; 1.80A {Clostridium acetobutylicum}
Probab=64.17 E-value=14 Score=31.89 Aligned_cols=49 Identities=12% Similarity=0.114 Sum_probs=43.5
Q ss_pred CeEEEEecCCChhhHHHHHHHHHHHhCCeEEEEE---CcEEEEecCCCCCCc
Q 002316 296 EIVRLKIEGAPALNMKRMHEILERKTGGLVIWRS---GTAVSLYRGVSYEVP 344 (936)
Q Consensus 296 ELVKVKv~~~~~~dmk~~ae~LeekTGgeVVqrI---G~viVLYRg~nY~~P 344 (936)
++|+.|-....+.+.++++.+++-.-.--+|-++ |.+-|+||.++..+.
T Consensus 1 ~iVr~K~~~~kpMsveEAv~qmel~gh~F~vF~n~etg~~nVVYRR~dG~yG 52 (65)
T 3ka5_A 1 EIVKTKRFAIKPMSEEEAVLEMELLGHNFFVFQNGDSNEVNVVYKRKDGNYG 52 (65)
T ss_dssp CEEEEECSCCSCBCHHHHHHHHHHHTCSEEEEEETTTTEEEEEEECTTSCEE
T ss_pred CeEEEEeecCCCCCHHHHHHHHHhCCCcEEEEEeCCCCCEEEEEEeCCCCEE
Confidence 5789998888999999999999998888888888 789999999998874
No 6
>3k2t_A LMO2511 protein; listeria monocytogenes,binding, structural genomics, PSI-2, protein structure initiative; 2.40A {Listeria monocytogenes}
Probab=48.54 E-value=15 Score=30.95 Aligned_cols=48 Identities=13% Similarity=0.095 Sum_probs=38.2
Q ss_pred CeEEEEecCCChhhHHHHHHHHHHHhCCeEEEEE---CcEEEEecCCCCCC
Q 002316 296 EIVRLKIEGAPALNMKRMHEILERKTGGLVIWRS---GTAVSLYRGVSYEV 343 (936)
Q Consensus 296 ELVKVKv~~~~~~dmk~~ae~LeekTGgeVVqrI---G~viVLYRg~nY~~ 343 (936)
++|+.|-....+.+.++++.+|+-.-.--+|-++ |.+-|+||.++..+
T Consensus 1 ~ivr~K~~~~kpmsveEAv~qmel~gh~F~vF~n~~t~~~nVvYrR~dG~y 51 (57)
T 3k2t_A 1 EIVRTKQFSLKPMDSEEAVLQMNLLGHSFYVYTDAETNGTNIVYSRKDGKY 51 (57)
T ss_dssp CCCCCCC---CCBCHHHHHHHHHHHTCSEEEEEBSSSCCEEEEEECTTSCE
T ss_pred CeEEEEeccCCCCCHHHHHHHHHhCCCcEEEEEcCCCCCEEEEEEeCCCCE
Confidence 4667776777788999999999998888888877 88999999998776
No 7
>3lyv_A Ribosome-associated factor Y; ribosomal protein S30AE family, structural genomics, PSI-2, structure initiative; 2.70A {Streptococcus pyogenes}
Probab=43.84 E-value=17 Score=31.46 Aligned_cols=49 Identities=18% Similarity=0.247 Sum_probs=41.8
Q ss_pred CeEEEEecCCChhhHHHHHHHHHHHhCCeEEEEE---CcEEEEecCCCCCCc
Q 002316 296 EIVRLKIEGAPALNMKRMHEILERKTGGLVIWRS---GTAVSLYRGVSYEVP 344 (936)
Q Consensus 296 ELVKVKv~~~~~~dmk~~ae~LeekTGgeVVqrI---G~viVLYRg~nY~~P 344 (936)
++|+.|-....+.+.++++.+++-.-.--+|-++ |.+-|+||.++..+.
T Consensus 2 ~iVr~K~~~~kpMsveEAv~qMel~gh~F~vF~n~etg~~nVVYRR~dG~yG 53 (66)
T 3lyv_A 2 QVVRTKNVTLKPMDVEEARLQMELLGHDFFIYTDSEDGATNILYRREDGNLG 53 (66)
T ss_dssp CCCCCCCCCCCEECHHHHHHHHHTTTCSEEEEEETTTCSEEEEEECTTSSEE
T ss_pred eEEEEEEccCCCCCHHHHHHHHHcCCCcEEEEEeCCCCCEEEEEEECCCCEE
Confidence 4677777778889999999999988778888887 789999999998874
No 8
>3rrk_A V-type ATPase 116 kDa subunit; alpha beta fold, proton pump, subunit I/A, V-ATPase, proton; HET: NHE; 2.64A {Meiothermus ruber}
Probab=23.29 E-value=6.8e+02 Score=26.45 Aligned_cols=33 Identities=24% Similarity=0.151 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH---HHhhhc
Q 002316 646 RRHAYLVQKLEKKLARAERKLLRAERA---LSKVEE 678 (936)
Q Consensus 646 ~r~~~~vk~~e~kL~~a~~K~~rae~~---L~k~e~ 678 (936)
...+..++.++.++..++.++.+.+.. +..++.
T Consensus 102 ~~l~~~~~~l~~~~~~L~~~~~~l~~~~~~l~~L~p 137 (357)
T 3rrk_A 102 RPVASRAEVLGKERAALEEEIQTIELFGKAAEKLAA 137 (357)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhh
Confidence 345567778888888888888888888 777765
No 9
>1fxk_A Prefoldin; archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1 PDB: 1fxk_B
Probab=23.27 E-value=3.8e+02 Score=23.56 Aligned_cols=68 Identities=18% Similarity=0.224 Sum_probs=44.2
Q ss_pred HHHHHHHHHHHHHhCCEEEeccccccccEEEEEecCCCCCCCcCCCCccccHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 002316 746 DQAKKIALALEAESGGVLVSVDKISKGYAMVVYRGKDYQRPSTLRPKNLLTKRKALARSIELQRQEALLKHVATLESNAG 825 (936)
Q Consensus 746 ~d~keiA~~Le~~SGg~lVqV~k~~IG~tiILYRgkNY~rP~~l~P~nlLTKrkAl~rs~~~qr~~~l~~~i~~l~~~i~ 825 (936)
.+...+..+|...-...-|.. .||.++|- .++-+|.. .-..|.+.+..-|..|++++.
T Consensus 32 ~e~~~~~~EL~~l~~d~~vy~---~iG~vfv~-----------------~~~~e~~~--~L~~~~e~i~~~i~~le~~~~ 89 (107)
T 1fxk_A 32 NETQKALEELSRAADDAEVYK---SSGNILIR-----------------VAKDELTE--ELQEKLETLQLREKTIERQEE 89 (107)
T ss_dssp HHHHHHHHHHHHSCTTCCEEE---EETTEEEE-----------------ECHHHHHH--HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCCchHHH---HHhHHHHh-----------------ccHHHHHH--HHHHHHHHHHHHHHHHHHHHH
Confidence 344556667766544443442 79988774 33445544 235677777788888888888
Q ss_pred HHHHHHHHhh
Q 002316 826 RLRSEIEQMN 835 (936)
Q Consensus 826 ~l~~~l~~~~ 835 (936)
.++.+|..++
T Consensus 90 ~~~~~l~~lk 99 (107)
T 1fxk_A 90 RVMKKLQEMQ 99 (107)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 8888887765
No 10
>2e6x_A TT1592, hypothetical protein TTHA1281; unknown function protein, NPPSFA, national project on protei structural and functional analyses; 2.00A {Thermus thermophilus}
Probab=22.48 E-value=34 Score=29.82 Aligned_cols=17 Identities=35% Similarity=0.642 Sum_probs=14.6
Q ss_pred HHHHHHhCCeEEEEECc
Q 002316 315 EILERKTGGLVIWRSGT 331 (936)
Q Consensus 315 e~LeekTGgeVVqrIG~ 331 (936)
..+-++.|+.+|||||+
T Consensus 3 ~d~L~~LG~~LvWRiGk 19 (69)
T 2e6x_A 3 KDLLDKLGQHLVWRMGR 19 (69)
T ss_dssp HHHHHHTTCCEEEEEEE
T ss_pred HHHHHHHhceeEEeecc
Confidence 45667899999999997
No 11
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=20.29 E-value=3.8e+02 Score=23.87 Aligned_cols=67 Identities=25% Similarity=0.293 Sum_probs=39.8
Q ss_pred HHHHHHHHHHHHhCCEEEeccccccccEEEEEecCCCCCCCcCCCCccccHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 002316 747 QAKKIALALEAESGGVLVSVDKISKGYAMVVYRGKDYQRPSTLRPKNLLTKRKALARSIELQRQEALLKHVATLESNAGR 826 (936)
Q Consensus 747 d~keiA~~Le~~SGg~lVqV~k~~IG~tiILYRgkNY~rP~~l~P~nlLTKrkAl~rs~~~qr~~~l~~~i~~l~~~i~~ 826 (936)
+...+..+|...-...-|.. .||.++|- .++-+|.. .-..|.+.+..-|..|++++..
T Consensus 38 e~~~~~~eL~~l~~d~~vy~---~iG~vfv~-----------------~~~~ea~~--~L~~~~e~ie~~i~~le~~~~~ 95 (117)
T 2zqm_A 38 EAKKALDEIESLPDDAVVYK---TVGTLIVK-----------------TTKDKAVA--ELKEKIETLEVRLNALERQEKK 95 (117)
T ss_dssp HHHHHHHHHHTSCTTCCEEE---EETTEEEE-----------------ECHHHHHH--HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCCcHhHH---HhhHHHhh-----------------ccHHHHHH--HHHHHHHHHHHHHHHHHHHHHH
Confidence 34455566665444333442 78988764 23445544 2345666667777777777777
Q ss_pred HHHHHHHhh
Q 002316 827 LRSEIEQMN 835 (936)
Q Consensus 827 l~~~l~~~~ 835 (936)
++.+|.+++
T Consensus 96 l~~~l~~lk 104 (117)
T 2zqm_A 96 LNEKLKELT 104 (117)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 777766654
Done!