BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 002318
(936 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1V87|A Chain A, Solution Structure Of The Ring-H2 Finger Domain Of Mouse
Deltex Protein 2
Length = 114
Score = 38.9 bits (89), Expect = 0.013, Method: Composition-based stats.
Identities = 20/49 (40%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
Query: 833 DEDCGVCRRKILVAGRDYRMARGYASVGPMAPFYVFPCGHAFHAQCLIA 881
+EDC +C K+ VA M A +GPM + C HAFH CL+A
Sbjct: 25 EEDCIICMEKLAVASGYSDMTDSKA-LGPMVVGRLTKCSHAFHLLCLLA 72
>pdb|1Q1A|A Chain A, Structure Of The Yeast Hst2 Protein Deacetylase In Ternary
Complex With 2'-O-Acetyl Adp Ribose And Histone Peptide
Length = 289
Score = 31.6 bits (70), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 20/79 (25%), Positives = 36/79 (45%), Gaps = 4/79 (5%)
Query: 245 SGAGIYHGGLNFGAQRSSPNGDENFVENKALLSYSKLSEGAEAVKPGSMAVSEYHFLLLM 304
G G+YH D +F ++ L Y+ A+ + PG+ S++H+LL +
Sbjct: 43 PGTGLYHNLARLKLPYPEAVFDVDFFQSDPLPFYTL----AKELYPGNFRPSKFHYLLKL 98
Query: 305 GNKVKVVNRISEQIIEELQ 323
V+ R+ Q I+ L+
Sbjct: 99 FQDKDVLKRVYTQNIDTLE 117
>pdb|1SZC|A Chain A, Structural Basis For Nicotinamide Cleavage And Adp-Ribose
Transfer By Nad+-Dependent Sir2 HistonePROTEIN
DEACETYLASES
pdb|1SZD|A Chain A, Structural Basis For Nicotinamide Cleavage And Adp-Ribose
Transfer By Nad+-Dependent Sir2 HistonePROTEIN
DEACETYLASES
Length = 297
Score = 31.6 bits (70), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 20/79 (25%), Positives = 36/79 (45%), Gaps = 4/79 (5%)
Query: 245 SGAGIYHGGLNFGAQRSSPNGDENFVENKALLSYSKLSEGAEAVKPGSMAVSEYHFLLLM 304
G G+YH D +F ++ L Y+ A+ + PG+ S++H+LL +
Sbjct: 50 PGTGLYHNLARLKLPYPEAVFDVDFFQSDPLPFYTL----AKELYPGNFRPSKFHYLLKL 105
Query: 305 GNKVKVVNRISEQIIEELQ 323
V+ R+ Q I+ L+
Sbjct: 106 FQDKDVLKRVYTQNIDTLE 124
>pdb|1Q17|A Chain A, Structure Of The Yeast Hst2 Protein Deacetylase In Ternary
Complex With 2'-O-Acetyl Adp Ribose And Histone Peptide
pdb|1Q17|B Chain B, Structure Of The Yeast Hst2 Protein Deacetylase In Ternary
Complex With 2'-O-Acetyl Adp Ribose And Histone Peptide
pdb|1Q17|C Chain C, Structure Of The Yeast Hst2 Protein Deacetylase In Ternary
Complex With 2'-O-Acetyl Adp Ribose And Histone Peptide
Length = 300
Score = 31.6 bits (70), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 20/79 (25%), Positives = 36/79 (45%), Gaps = 4/79 (5%)
Query: 245 SGAGIYHGGLNFGAQRSSPNGDENFVENKALLSYSKLSEGAEAVKPGSMAVSEYHFLLLM 304
G G+YH D +F ++ L Y+ A+ + PG+ S++H+LL +
Sbjct: 53 PGTGLYHNLARLKLPYPEAVFDVDFFQSDPLPFYTL----AKELYPGNFRPSKFHYLLKL 108
Query: 305 GNKVKVVNRISEQIIEELQ 323
V+ R+ Q I+ L+
Sbjct: 109 FQDKDVLKRVYTQNIDTLE 127
>pdb|2OD7|A Chain A, Crystal Structure Of Yhst2 Bound To The Intermediate
Analogue Adp-Hpd, And And Aceylated H4 Peptide
pdb|2OD9|A Chain A, Structural Basis For Nicotinamide Inhibition And Base
Exchange In Sir2 Enzymes
pdb|2QQF|A Chain A, Hst2 Bound To Adp-Hpd And Acetylated Histone H4
pdb|2QQG|A Chain A, Hst2 Bound To Adp-hpd, Acetyllated Histone H4 And
Nicotinamide
Length = 308
Score = 31.2 bits (69), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 20/79 (25%), Positives = 36/79 (45%), Gaps = 4/79 (5%)
Query: 245 SGAGIYHGGLNFGAQRSSPNGDENFVENKALLSYSKLSEGAEAVKPGSMAVSEYHFLLLM 304
G G+YH D +F ++ L Y+ A+ + PG+ S++H+LL +
Sbjct: 61 PGTGLYHNLARLKLPYPEAVFDVDFFQSDPLPFYTL----AKELYPGNFRPSKFHYLLKL 116
Query: 305 GNKVKVVNRISEQIIEELQ 323
V+ R+ Q I+ L+
Sbjct: 117 FQDKDVLKRVYTQNIDTLE 135
>pdb|3F46|A Chain A, The Crystal Structure Of C176a Mutated [fe]-Hydrogenase
(Hmd) Holoenzyme From Methanocaldococcus Jannaschii
pdb|3H65|A Chain A, The Crystal Structure Of C176a Mutated [fe]-Hydrogenase
(Hmd) Holoenzyme In Complex With
Methylenetetrahydromethanopterin
Length = 358
Score = 30.4 bits (67), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 16/64 (25%), Positives = 31/64 (48%), Gaps = 5/64 (7%)
Query: 572 PDLIMLDAYETVESWMTTNNLNPRKLIPAMMRYSSEPHAKNETHEVIKYLEFCVHRLHNE 631
P L+++D ++ E + NP ++P + K + E+ K + C+H +H E
Sbjct: 71 PGLVVIDEFDPKEVMEAHLSGNPESIMPKIREV-----VKAKAKELPKPPKACIHLVHPE 125
Query: 632 DPGV 635
D G+
Sbjct: 126 DVGL 129
>pdb|2B0J|A Chain A, The Crystal Structure Of The Apoenzyme Of The
Iron-Sulfur-Cluster-Free Hydrogenase (Hmd)
pdb|3F47|A Chain A, The Crystal Structure Of [fe]-Hydrogenase (Hmd) Holoenzyme
From Methanocaldococcus Jannaschii
Length = 358
Score = 30.4 bits (67), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 16/64 (25%), Positives = 31/64 (48%), Gaps = 5/64 (7%)
Query: 572 PDLIMLDAYETVESWMTTNNLNPRKLIPAMMRYSSEPHAKNETHEVIKYLEFCVHRLHNE 631
P L+++D ++ E + NP ++P + K + E+ K + C+H +H E
Sbjct: 71 PGLVVIDEFDPKEVMEAHLSGNPESIMPKIREV-----VKAKAKELPKPPKACIHLVHPE 125
Query: 632 DPGV 635
D G+
Sbjct: 126 DVGL 129
>pdb|3DAF|A Chain A, The Crystal Structure Of [fe]-Hydrogenase Holoenzyme (Hmd)
From Methanocaldococcus Jannaschii Cocrystallized With
Cyanide
pdb|3DAG|A Chain A, The Crystal Structure Of [fe]-Hydrogenase Holoenzyme (Hmd)
From Methanocaldococcus Jannaschii
Length = 358
Score = 30.4 bits (67), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 16/64 (25%), Positives = 31/64 (48%), Gaps = 5/64 (7%)
Query: 572 PDLIMLDAYETVESWMTTNNLNPRKLIPAMMRYSSEPHAKNETHEVIKYLEFCVHRLHNE 631
P L+++D ++ E + NP ++P + K + E+ K + C+H +H E
Sbjct: 71 PGLVVIDEFDPKEVMEAHLSGNPESIMPKIREV-----VKAKAKELPKPPKACIHLVHPE 125
Query: 632 DPGV 635
D G+
Sbjct: 126 DVGL 129
>pdb|3S2K|A Chain A, Structural Basis Of Wnt Signaling Inhibition By Dickkopf
Binding To Lrp56.
pdb|3S2K|B Chain B, Structural Basis Of Wnt Signaling Inhibition By Dickkopf
Binding To Lrp56
Length = 629
Score = 30.4 bits (67), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 17/27 (62%)
Query: 894 VVDIVLSYKRLQSGWNTVASGGLHISH 920
V+DI++ + QSGWN AS H SH
Sbjct: 249 VMDILVFHSSRQSGWNECASSNGHCSH 275
>pdb|3S8V|A Chain A, Crystal Structure Of Lrp6-Dkk1 Complex
pdb|3S8V|B Chain B, Crystal Structure Of Lrp6-Dkk1 Complex
pdb|3S8Z|A Chain A, Crystal Structure Of Lrp6-E3e4
Length = 623
Score = 30.4 bits (67), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 17/27 (62%)
Query: 894 VVDIVLSYKRLQSGWNTVASGGLHISH 920
V+DI++ + QSGWN AS H SH
Sbjct: 256 VMDILVFHSSRQSGWNECASSNGHCSH 282
>pdb|4A0P|A Chain A, Crystal Structure Of Lrp6p3e3p4e4
Length = 628
Score = 30.4 bits (67), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 17/27 (62%)
Query: 894 VVDIVLSYKRLQSGWNTVASGGLHISH 920
V+DI++ + QSGWN AS H SH
Sbjct: 251 VMDILVFHSSRQSGWNECASSNGHCSH 277
>pdb|1Q14|A Chain A, Structure And Autoregulation Of The Yeast Hst2 Homolog Of
Sir2
Length = 361
Score = 30.0 bits (66), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 20/78 (25%), Positives = 36/78 (46%), Gaps = 4/78 (5%)
Query: 246 GAGIYHGGLNFGAQRSSPNGDENFVENKALLSYSKLSEGAEAVKPGSMAVSEYHFLLLMG 305
G G+YH D +F ++ L Y+ A+ + PG+ S++H+LL +
Sbjct: 52 GTGLYHNLARLKLPYPEAVFDVDFFQSDPLPFYTL----AKELYPGNFRPSKFHYLLKLF 107
Query: 306 NKVKVVNRISEQIIEELQ 323
V+ R+ Q I+ L+
Sbjct: 108 QDKDVLKRVYTQNIDTLE 125
>pdb|1WP0|A Chain A, Human Sco1
pdb|1WP0|B Chain B, Human Sco1
pdb|1WP0|C Chain C, Human Sco1
Length = 165
Score = 30.0 bits (66), Expect = 6.5, Method: Composition-based stats.
Identities = 22/92 (23%), Positives = 38/92 (41%), Gaps = 17/92 (18%)
Query: 750 ENIRKAIAFLKETDGLLKIEDILPFFPDFALIDDFKEAICSSLDDYNKQIEQLKQEMNDA 809
E + K I + E D + + D+ P F D KEAI + + +++ ++
Sbjct: 39 EELEKXIQVVDEIDSITTLPDLTPLFISIDPERDTKEAIANYVKEFSPKLV--------- 89
Query: 810 THGADNIRNDISALAQRYAVI------DRDED 835
G R ++ +A+ Y V D DED
Sbjct: 90 --GLTGTREEVDQVARAYRVYYSPGPKDEDED 119
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.135 0.398
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 27,676,470
Number of Sequences: 62578
Number of extensions: 1161303
Number of successful extensions: 2983
Number of sequences better than 100.0: 19
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 16
Number of HSP's that attempted gapping in prelim test: 2978
Number of HSP's gapped (non-prelim): 20
length of query: 936
length of database: 14,973,337
effective HSP length: 108
effective length of query: 828
effective length of database: 8,214,913
effective search space: 6801947964
effective search space used: 6801947964
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 56 (26.2 bits)