Query 002318
Match_columns 936
No_of_seqs 277 out of 830
Neff 8.2
Searched_HMMs 46136
Date Thu Mar 28 21:23:26 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002318.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/002318hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2034 Vacuolar sorting prote 100.0 3E-126 7E-131 1082.2 54.4 835 5-902 23-878 (911)
2 KOG2066 Vacuolar assembly/sort 100.0 2.6E-67 5.6E-72 591.0 45.2 712 21-886 39-825 (846)
3 KOG2114 Vacuolar assembly/sort 100.0 1E-48 2.2E-53 443.1 59.8 764 23-913 27-919 (933)
4 KOG2063 Vacuolar assembly/sort 100.0 7.4E-34 1.6E-38 335.7 44.1 531 289-883 243-867 (877)
5 PF05131 Pep3_Vps18: Pep3/Vps1 100.0 1.6E-30 3.5E-35 250.2 16.7 146 248-404 1-147 (147)
6 smart00299 CLH Clathrin heavy 99.7 4.1E-16 9E-21 152.0 11.0 130 591-744 7-139 (140)
7 PF10367 Vps39_2: Vacuolar sor 99.6 2.2E-16 4.8E-21 146.9 7.5 107 757-880 2-108 (109)
8 PF00637 Clathrin: Region in C 99.4 3.1E-14 6.8E-19 139.3 -2.0 134 590-745 6-140 (143)
9 KOG2079 Vacuolar assembly/sort 98.8 2.1E-07 4.6E-12 110.7 19.0 328 522-885 789-1170(1206)
10 KOG0985 Vesicle coat protein c 98.5 3.6E-06 7.7E-11 99.3 19.7 221 499-761 890-1130(1666)
11 KOG0985 Vesicle coat protein c 98.3 0.0004 8.7E-09 82.7 29.1 372 367-793 1054-1456(1666)
12 KOG3617 WD40 and TPR repeat-co 98.2 0.00019 4.1E-09 83.7 22.1 253 369-743 834-1093(1416)
13 KOG2114 Vacuolar assembly/sort 98.0 0.00015 3.2E-09 85.4 16.2 168 541-722 341-516 (933)
14 cd00200 WD40 WD40 domain, foun 97.9 0.021 4.5E-07 60.5 30.5 151 21-199 9-164 (289)
15 PF04053 Coatomer_WDAD: Coatom 97.9 0.0022 4.8E-08 74.1 23.2 137 31-200 79-223 (443)
16 smart00299 CLH Clathrin heavy 97.7 0.0013 2.9E-08 63.8 15.1 129 420-575 7-136 (140)
17 cd00200 WD40 WD40 domain, foun 97.6 0.0027 5.8E-08 67.4 18.7 150 21-197 135-288 (289)
18 PF00780 CNH: CNH domain; Int 97.4 0.035 7.5E-07 60.4 23.9 244 26-324 2-265 (275)
19 KOG2048 WD40 repeat protein [G 97.3 0.0059 1.3E-07 70.5 15.5 161 24-199 433-602 (691)
20 KOG1538 Uncharacterized conser 97.2 0.073 1.6E-06 61.5 22.7 68 522-589 761-830 (1081)
21 KOG0289 mRNA splicing factor [ 97.1 0.009 1.9E-07 65.7 14.8 134 22-174 348-485 (506)
22 PF13639 zf-RING_2: Ring finge 97.1 0.00027 5.9E-09 53.8 2.2 37 834-886 1-37 (44)
23 KOG2079 Vacuolar assembly/sort 97.1 0.24 5.1E-06 60.8 26.7 118 21-147 89-206 (1206)
24 PF04053 Coatomer_WDAD: Coatom 97.0 0.48 1E-05 55.1 28.4 77 334-413 236-317 (443)
25 KOG0315 G-protein beta subunit 96.7 0.082 1.8E-06 54.6 16.4 154 24-199 88-244 (311)
26 KOG0305 Anaphase promoting com 96.6 0.59 1.3E-05 54.2 24.5 142 30-199 187-330 (484)
27 TIGR02917 PEP_TPR_lipo putativ 96.6 0.71 1.5E-05 58.4 28.6 139 516-659 575-729 (899)
28 PF12861 zf-Apc11: Anaphase-pr 96.5 0.0034 7.4E-08 54.1 4.1 51 830-886 18-68 (85)
29 PLN03077 Protein ECB2; Provisi 96.4 0.98 2.1E-05 57.7 28.0 141 514-658 294-449 (857)
30 KOG1587 Cytoplasmic dynein int 96.4 0.14 3.1E-06 60.6 18.4 148 20-177 241-410 (555)
31 KOG1036 Mitotic spindle checkp 96.4 0.07 1.5E-06 56.7 13.9 144 22-190 136-294 (323)
32 KOG2066 Vacuolar assembly/sort 96.3 0.23 4.9E-06 59.2 19.2 79 495-575 622-701 (846)
33 KOG3621 WD40 repeat-containing 96.3 1.5 3.3E-05 51.8 25.3 322 22-381 36-372 (726)
34 KOG1446 Histone H3 (Lys4) meth 96.3 0.24 5.1E-06 53.0 17.3 151 23-199 144-302 (311)
35 PLN03081 pentatricopeptide (PP 96.3 0.56 1.2E-05 58.4 23.9 309 369-709 131-487 (697)
36 PF00637 Clathrin: Region in C 96.2 0.0002 4.2E-09 69.9 -5.5 132 420-577 7-138 (143)
37 PLN03218 maturation of RBCL 1; 96.2 1.7 3.7E-05 56.2 28.0 304 362-708 371-708 (1060)
38 KOG0289 mRNA splicing factor [ 96.1 0.24 5.1E-06 55.0 16.8 113 65-198 303-417 (506)
39 PLN03218 maturation of RBCL 1; 96.1 1.4 3E-05 57.0 26.5 266 367-658 412-709 (1060)
40 PLN03077 Protein ECB2; Provisi 96.1 3.2 7E-05 53.0 30.3 277 395-709 327-650 (857)
41 PF13923 zf-C3HC4_2: Zinc fing 96.0 0.0025 5.5E-08 47.0 0.7 22 864-885 11-32 (39)
42 PF12678 zf-rbx1: RING-H2 zinc 95.9 0.0038 8.3E-08 53.2 1.7 48 833-886 19-66 (73)
43 KOG0646 WD40 repeat protein [G 95.9 0.2 4.4E-06 56.0 15.1 71 17-95 77-150 (476)
44 PF08662 eIF2A: Eukaryotic tra 95.8 0.44 9.4E-06 49.1 16.7 132 41-200 39-181 (194)
45 KOG0270 WD40 repeat-containing 95.7 0.21 4.5E-06 55.6 14.3 142 29-197 254-401 (463)
46 PF10366 Vps39_1: Vacuolar sor 95.7 0.026 5.7E-07 52.0 6.3 50 496-546 15-64 (108)
47 PLN00181 protein SPA1-RELATED; 95.7 0.46 9.9E-06 60.1 19.7 150 22-198 533-688 (793)
48 cd00162 RING RING-finger (Real 95.6 0.0094 2E-07 44.9 2.8 33 835-885 1-33 (45)
49 TIGR00990 3a0801s09 mitochondr 95.6 2.7 5.9E-05 51.5 25.5 135 519-658 342-492 (615)
50 KOG1539 WD repeat protein [Gen 95.6 0.38 8.2E-06 57.5 16.6 131 20-173 75-210 (910)
51 TIGR02917 PEP_TPR_lipo putativ 95.6 1.1 2.3E-05 56.8 22.7 80 369-448 575-663 (899)
52 PRK15174 Vi polysaccharide exp 95.5 2.1 4.6E-05 52.8 24.1 269 365-659 46-344 (656)
53 KOG1941 Acetylcholine receptor 95.5 0.15 3.3E-06 55.4 11.9 56 833-903 365-420 (518)
54 KOG0316 Conserved WD40 repeat- 95.5 0.28 6.1E-06 50.4 13.1 162 11-200 136-299 (307)
55 KOG2106 Uncharacterized conser 95.4 0.82 1.8E-05 51.8 17.6 162 16-198 324-519 (626)
56 PLN00181 protein SPA1-RELATED; 95.2 1 2.2E-05 57.1 20.6 156 21-199 575-737 (793)
57 PRK11447 cellulose synthase su 95.2 17 0.00036 48.3 32.3 52 367-418 152-208 (1157)
58 KOG1539 WD repeat protein [Gen 95.1 0.15 3.3E-06 60.7 11.4 147 24-198 453-604 (910)
59 PLN03081 pentatricopeptide (PP 95.0 4.6 0.0001 50.3 25.4 19 827-845 647-666 (697)
60 smart00184 RING Ring finger. E 95.0 0.023 5.1E-07 41.0 3.0 21 864-884 10-30 (39)
61 KOG1274 WD40 repeat protein [G 94.8 1.2 2.7E-05 53.9 17.7 153 23-199 98-261 (933)
62 PRK11447 cellulose synthase su 94.8 4.1 8.9E-05 53.9 25.0 49 370-418 360-412 (1157)
63 PTZ00420 coronin; Provisional 94.7 3.4 7.5E-05 49.6 21.9 116 21-146 74-197 (568)
64 PTZ00421 coronin; Provisional 94.7 1.9 4.1E-05 51.1 19.5 154 25-199 34-197 (493)
65 PHA02929 N1R/p28-like protein; 94.7 0.069 1.5E-06 56.0 6.7 42 831-884 172-214 (238)
66 KOG2063 Vacuolar assembly/sort 94.7 0.27 5.8E-06 60.7 12.5 187 425-627 596-795 (877)
67 KOG2048 WD40 repeat protein [G 94.7 1.8 3.9E-05 50.8 18.3 158 21-200 25-184 (691)
68 KOG0315 G-protein beta subunit 94.5 1.5 3.3E-05 45.6 15.3 150 24-199 43-196 (311)
69 PTZ00421 coronin; Provisional 94.5 3.1 6.8E-05 49.3 20.6 114 21-146 75-198 (493)
70 KOG1273 WD40 repeat protein [G 94.5 1.8 3.9E-05 46.4 16.2 149 23-199 67-224 (405)
71 PF00097 zf-C3HC4: Zinc finger 94.4 0.013 2.8E-07 43.7 0.4 22 864-885 11-32 (41)
72 KOG3617 WD40 and TPR repeat-co 94.2 1.5 3.2E-05 52.7 16.3 73 514-586 806-881 (1416)
73 KOG2055 WD40 repeat protein [G 94.0 1.2 2.6E-05 50.1 14.4 155 1-174 233-394 (514)
74 PF10366 Vps39_1: Vacuolar sor 93.9 0.071 1.5E-06 49.1 4.3 62 637-709 3-64 (108)
75 KOG0291 WD40-repeat-containing 93.9 3.3 7.2E-05 49.4 18.3 165 7-198 251-420 (893)
76 KOG0294 WD40 repeat-containing 93.8 2.5 5.5E-05 45.4 15.8 91 21-120 43-137 (362)
77 KOG0266 WD40 repeat-containing 93.8 2.2 4.8E-05 50.1 17.6 153 22-199 160-317 (456)
78 KOG0284 Polyadenylation factor 93.7 0.57 1.2E-05 51.7 11.3 160 22-208 139-301 (464)
79 KOG1734 Predicted RING-contain 93.6 0.025 5.3E-07 58.5 0.7 43 832-883 223-265 (328)
80 PRK11788 tetratricopeptide rep 93.4 5.1 0.00011 45.6 19.5 49 370-418 78-134 (389)
81 KOG0643 Translation initiation 93.3 4.2 9.1E-05 42.9 16.1 152 21-197 52-219 (327)
82 KOG3616 Selective LIM binding 93.0 3.3 7.2E-05 49.1 16.3 213 365-596 1109-1359(1636)
83 KOG0310 Conserved WD40 repeat- 92.9 21 0.00044 40.9 30.1 161 13-199 60-226 (487)
84 KOG0273 Beta-transducin family 92.9 3 6.5E-05 47.1 15.4 152 22-200 236-389 (524)
85 KOG1920 IkappaB kinase complex 92.9 2.1 4.5E-05 53.7 15.4 44 375-418 922-966 (1265)
86 KOG2055 WD40 repeat protein [G 92.9 0.45 9.7E-06 53.3 9.0 142 24-190 306-455 (514)
87 KOG0646 WD40 repeat protein [G 92.8 0.98 2.1E-05 50.7 11.5 131 23-175 176-329 (476)
88 PF14634 zf-RING_5: zinc-RING 92.7 0.092 2E-06 39.8 2.5 33 835-883 1-33 (44)
89 KOG0293 WD40 repeat-containing 92.6 0.61 1.3E-05 51.5 9.4 122 7-140 380-507 (519)
90 PRK11788 tetratricopeptide rep 92.6 6.6 0.00014 44.7 18.9 48 371-418 45-96 (389)
91 KOG1493 Anaphase-promoting com 92.4 0.04 8.8E-07 45.7 0.2 55 829-889 16-70 (84)
92 KOG0271 Notchless-like WD40 re 92.3 6.4 0.00014 43.5 16.5 170 7-199 98-275 (480)
93 KOG0278 Serine/threonine kinas 92.1 2.5 5.3E-05 44.1 12.5 144 28-195 152-302 (334)
94 KOG1920 IkappaB kinase complex 91.9 27 0.00058 44.5 23.0 65 680-744 948-1013(1265)
95 KOG0318 WD40 repeat stress pro 91.7 11 0.00023 43.5 17.9 130 23-174 365-496 (603)
96 KOG0283 WD40 repeat-containing 91.3 3.1 6.8E-05 50.0 14.1 152 21-199 409-575 (712)
97 COG5194 APC11 Component of SCF 91.3 0.23 5.1E-06 41.7 3.4 50 833-885 20-69 (88)
98 KOG1274 WD40 repeat protein [G 90.9 5.4 0.00012 48.7 15.4 146 24-198 18-166 (933)
99 PTZ00420 coronin; Provisional 90.7 16 0.00034 44.1 19.5 71 21-100 125-199 (568)
100 KOG2076 RNA polymerase III tra 90.7 34 0.00073 42.3 21.8 80 613-709 429-508 (895)
101 COG5540 RING-finger-containing 90.6 0.15 3.3E-06 53.7 2.3 38 832-885 322-359 (374)
102 smart00504 Ubox Modified RING 90.5 0.15 3.3E-06 41.8 1.7 32 835-885 3-34 (63)
103 KOG0266 WD40 repeat-containing 90.4 9.8 0.00021 44.8 17.5 153 21-197 203-361 (456)
104 KOG2076 RNA polymerase III tra 90.4 19 0.00041 44.3 19.5 25 394-418 142-166 (895)
105 KOG2445 Nuclear pore complex c 90.3 13 0.00029 40.1 16.1 79 112-199 171-257 (361)
106 KOG0279 G protein beta subunit 90.2 15 0.00033 39.1 16.2 149 24-198 108-260 (315)
107 KOG2321 WD40 repeat protein [G 90.1 4.2 9.1E-05 47.1 13.1 121 34-175 148-281 (703)
108 KOG4714 Nucleoporin [Nuclear s 90.1 0.89 1.9E-05 47.5 7.2 72 20-99 178-255 (319)
109 PRK14720 transcript cleavage f 90.1 24 0.00052 44.5 20.7 253 370-684 40-303 (906)
110 KOG0305 Anaphase promoting com 90.1 2.3 5.1E-05 49.4 11.4 132 21-175 260-397 (484)
111 KOG0647 mRNA export protein (c 90.0 2.9 6.4E-05 44.7 11.0 148 22-199 157-318 (347)
112 KOG2041 WD40 repeat protein [G 89.7 4.9 0.00011 47.6 13.3 90 514-603 858-951 (1189)
113 COG5243 HRD1 HRD ubiquitin lig 89.6 0.78 1.7E-05 49.9 6.6 100 775-886 235-334 (491)
114 KOG0288 WD40 repeat protein Ti 89.6 6.2 0.00013 44.0 13.4 117 39-175 320-441 (459)
115 PF12569 NARP1: NMDA receptor- 89.6 10 0.00022 45.1 16.5 50 369-418 12-65 (517)
116 KOG0295 WD40 repeat-containing 89.3 17 0.00038 40.0 16.3 149 30-198 204-362 (406)
117 PF07035 Mic1: Colon cancer-as 89.3 6.2 0.00013 39.3 12.3 96 617-721 13-114 (167)
118 KOG0291 WD40-repeat-containing 89.3 20 0.00043 43.2 17.9 155 20-200 54-219 (893)
119 TIGR00990 3a0801s09 mitochondr 89.2 26 0.00056 42.9 20.6 74 375-448 308-393 (615)
120 KOG0318 WD40 repeat stress pro 89.2 8.4 0.00018 44.3 14.4 133 24-175 446-583 (603)
121 PF08553 VID27: VID27 cytoplas 89.2 6.2 0.00013 48.9 14.6 132 39-197 502-644 (794)
122 PF08596 Lgl_C: Lethal giant l 89.2 3.6 7.9E-05 47.2 12.1 86 21-148 86-175 (395)
123 KOG2321 WD40 repeat protein [G 89.1 6.9 0.00015 45.4 13.7 107 23-137 179-293 (703)
124 KOG1446 Histone H3 (Lys4) meth 89.1 37 0.00081 36.8 20.8 166 15-199 8-216 (311)
125 PF13432 TPR_16: Tetratricopep 88.5 0.98 2.1E-05 36.9 5.2 49 370-418 6-58 (65)
126 PF14559 TPR_19: Tetratricopep 88.5 0.48 1E-05 39.1 3.4 48 371-418 1-52 (68)
127 PF08662 eIF2A: Eukaryotic tra 88.5 8.1 0.00018 39.7 13.2 110 71-199 11-132 (194)
128 PF13920 zf-C3HC4_3: Zinc fing 88.2 0.27 6E-06 38.3 1.6 33 833-884 2-35 (50)
129 KOG2110 Uncharacterized conser 88.1 7.3 0.00016 42.9 12.6 121 9-147 118-249 (391)
130 KOG4628 Predicted E3 ubiquitin 88.1 0.89 1.9E-05 50.2 5.9 36 835-886 231-266 (348)
131 KOG4340 Uncharacterized conser 87.8 19 0.00041 38.8 15.1 70 360-431 9-83 (459)
132 KOG0270 WD40 repeat-containing 87.8 6.4 0.00014 44.2 12.2 155 29-202 190-362 (463)
133 KOG0288 WD40 repeat protein Ti 87.8 3.1 6.6E-05 46.3 9.6 95 22-120 342-441 (459)
134 KOG0264 Nucleosome remodeling 87.7 8.3 0.00018 43.4 13.1 150 33-199 192-346 (422)
135 TIGR00540 hemY_coli hemY prote 87.7 42 0.0009 38.8 20.0 111 540-658 269-395 (409)
136 KOG0268 Sof1-like rRNA process 87.4 5.2 0.00011 43.9 10.9 59 12-75 49-119 (433)
137 KOG1188 WD40 repeat protein [G 87.4 12 0.00027 40.8 13.6 157 6-175 53-221 (376)
138 PRK10049 pgaA outer membrane p 87.2 94 0.002 39.2 28.0 45 614-659 375-419 (765)
139 PRK05137 tolB translocation pr 86.9 21 0.00046 41.6 17.1 144 30-198 165-320 (435)
140 PF13445 zf-RING_UBOX: RING-ty 86.8 0.45 9.8E-06 35.9 2.0 23 864-886 13-35 (43)
141 KOG0275 Conserved WD40 repeat- 86.8 23 0.0005 38.3 15.0 109 24-147 309-424 (508)
142 COG3063 PilF Tfp pilus assembl 86.6 2.4 5.2E-05 44.0 7.6 78 376-456 91-175 (250)
143 PF14446 Prok-RING_1: Prokaryo 86.5 0.4 8.6E-06 37.7 1.5 35 832-882 4-39 (54)
144 PLN03208 E3 ubiquitin-protein 86.3 0.6 1.3E-05 47.1 3.1 37 830-885 15-51 (193)
145 KOG4378 Nuclear protein COP1 [ 86.3 8.4 0.00018 43.9 12.1 120 34-175 180-303 (673)
146 COG4946 Uncharacterized protei 85.9 6.9 0.00015 44.4 11.1 92 22-121 362-454 (668)
147 PF12816 Vps8: Golgi CORVET co 85.7 2.7 6E-05 43.2 7.7 73 629-709 18-91 (196)
148 PRK03629 tolB translocation pr 85.6 33 0.00071 40.0 17.7 143 30-197 163-316 (429)
149 KOG1840 Kinesin light chain [C 85.5 9.2 0.0002 45.1 12.8 52 367-418 205-268 (508)
150 KOG1036 Mitotic spindle checkp 85.5 14 0.0003 39.9 12.7 112 65-200 13-124 (323)
151 PF15227 zf-C3HC4_4: zinc fing 85.2 0.47 1E-05 35.6 1.3 22 866-887 12-33 (42)
152 KOG0276 Vesicle coat complex C 85.1 91 0.002 37.1 32.7 105 24-142 186-295 (794)
153 PF14779 BBS1: Ciliary BBSome 85.1 1.7 3.7E-05 46.2 5.9 85 5-95 161-255 (257)
154 PF08450 SGL: SMP-30/Gluconola 85.0 34 0.00074 36.2 16.2 79 30-119 11-94 (246)
155 PF12895 Apc3: Anaphase-promot 84.9 1.9 4.1E-05 37.4 5.3 47 370-416 34-83 (84)
156 KOG0268 Sof1-like rRNA process 84.9 6.1 0.00013 43.4 9.9 155 19-200 185-345 (433)
157 KOG0639 Transducin-like enhanc 84.7 4.6 0.0001 45.9 9.1 151 11-190 541-694 (705)
158 KOG0282 mRNA splicing factor [ 84.6 4.1 8.9E-05 46.2 8.8 150 23-199 216-371 (503)
159 PF08450 SGL: SMP-30/Gluconola 84.5 58 0.0013 34.4 19.7 161 25-200 43-213 (246)
160 TIGR02800 propeller_TolB tol-p 84.4 42 0.0009 38.6 17.8 142 32-198 202-352 (417)
161 KOG0286 G-protein beta subunit 84.2 56 0.0012 35.3 16.3 153 1-174 117-282 (343)
162 KOG0271 Notchless-like WD40 re 83.9 17 0.00036 40.4 12.7 98 65-177 115-212 (480)
163 KOG0307 Vesicle coat complex C 83.7 2.7 5.8E-05 52.4 7.5 167 16-200 111-284 (1049)
164 KOG0307 Vesicle coat complex C 83.7 8.4 0.00018 48.2 11.7 202 32-256 81-294 (1049)
165 KOG1407 WD40 repeat protein [F 83.7 25 0.00055 37.2 13.3 122 29-174 157-281 (313)
166 PF07569 Hira: TUP1-like enhan 83.1 4.5 9.7E-05 42.5 8.1 73 23-99 14-96 (219)
167 KOG4445 Uncharacterized conser 83.0 0.59 1.3E-05 49.4 1.4 64 832-911 114-177 (368)
168 KOG0293 WD40 repeat-containing 82.9 19 0.00041 40.3 12.7 151 22-195 225-379 (519)
169 KOG0273 Beta-transducin family 82.9 42 0.0009 38.4 15.6 118 65-199 359-481 (524)
170 KOG1407 WD40 repeat protein [F 82.7 47 0.001 35.3 14.8 136 29-192 75-211 (313)
171 KOG0282 mRNA splicing factor [ 82.6 8.6 0.00019 43.7 10.3 55 31-93 312-367 (503)
172 KOG0641 WD40 repeat protein [G 82.6 63 0.0014 33.3 15.5 116 22-148 184-305 (350)
173 KOG2930 SCF ubiquitin ligase, 82.4 1.4 3E-05 39.2 3.2 50 833-885 46-96 (114)
174 PRK04922 tolB translocation pr 82.3 52 0.0011 38.3 17.6 114 22-147 204-325 (433)
175 TIGR03866 PQQ_ABC_repeats PQQ- 82.3 44 0.00096 35.7 16.1 107 24-147 75-188 (300)
176 PF03178 CPSF_A: CPSF A subuni 82.1 88 0.0019 34.7 19.3 161 21-199 88-264 (321)
177 KOG1524 WD40 repeat-containing 82.0 73 0.0016 37.1 17.2 115 19-145 143-285 (737)
178 KOG0828 Predicted E3 ubiquitin 81.6 0.54 1.2E-05 52.9 0.6 51 829-884 567-620 (636)
179 KOG4649 PQQ (pyrrolo-quinoline 81.4 78 0.0017 33.7 15.8 109 25-147 57-166 (354)
180 KOG0316 Conserved WD40 repeat- 81.1 76 0.0017 33.3 17.9 87 25-121 23-112 (307)
181 PRK05137 tolB translocation pr 81.0 59 0.0013 37.9 17.4 155 19-198 199-364 (435)
182 PF13838 Clathrin_H_link: Clat 80.9 7.5 0.00016 32.2 6.8 54 391-444 6-64 (66)
183 PRK15174 Vi polysaccharide exp 80.8 1.5E+02 0.0033 36.6 27.8 259 371-658 86-377 (656)
184 TIGR03300 assembly_YfgL outer 80.8 27 0.00059 39.6 14.3 138 25-197 235-376 (377)
185 PF08309 LVIVD: LVIVD repeat; 80.8 6 0.00013 29.7 5.7 33 22-54 2-35 (42)
186 KOG1538 Uncharacterized conser 80.8 26 0.00056 41.6 13.4 117 65-200 93-213 (1081)
187 KOG0263 Transcription initiati 80.3 38 0.00081 41.0 14.9 105 23-143 537-646 (707)
188 PF13371 TPR_9: Tetratricopept 79.8 2.1 4.5E-05 35.8 3.5 49 370-418 4-56 (73)
189 PF09976 TPR_21: Tetratricopep 79.4 3.4 7.3E-05 40.1 5.3 58 369-427 56-120 (145)
190 PF09943 DUF2175: Uncharacteri 79.4 2 4.3E-05 38.5 3.2 37 835-888 4-40 (101)
191 KOG1188 WD40 repeat protein [G 79.2 29 0.00062 38.1 12.4 143 32-197 41-193 (376)
192 PRK02889 tolB translocation pr 79.2 56 0.0012 38.0 16.4 142 31-197 164-313 (427)
193 TIGR00599 rad18 DNA repair pro 78.9 1.2 2.5E-05 50.6 2.1 35 830-883 23-57 (397)
194 KOG0296 Angio-associated migra 78.6 18 0.00038 40.0 10.6 145 31-200 202-356 (399)
195 PRK01742 tolB translocation pr 78.5 74 0.0016 37.0 17.1 133 41-198 184-322 (429)
196 KOG0308 Conserved WD40 repeat- 78.1 49 0.0011 39.4 14.6 113 22-147 118-244 (735)
197 TIGR02521 type_IV_pilW type IV 77.7 35 0.00076 34.6 12.9 49 370-418 40-92 (234)
198 KOG2096 WD40 repeat protein [G 77.7 18 0.00038 39.3 10.1 109 24-146 190-308 (420)
199 KOG1240 Protein kinase contain 77.5 6.5 0.00014 49.6 7.9 61 21-85 1195-1260(1431)
200 KOG3970 Predicted E3 ubiquitin 77.4 1.5 3.3E-05 44.3 2.2 35 833-884 50-84 (299)
201 PRK02889 tolB translocation pr 77.3 98 0.0021 36.0 17.6 114 20-146 194-316 (427)
202 TIGR03866 PQQ_ABC_repeats PQQ- 76.9 1.1E+02 0.0023 32.6 30.0 119 32-174 2-123 (300)
203 KOG0772 Uncharacterized conser 76.9 41 0.0009 38.8 13.2 167 17-198 163-345 (641)
204 PRK04922 tolB translocation pr 76.5 72 0.0016 37.1 16.3 132 42-198 185-322 (433)
205 TIGR00570 cdk7 CDK-activating 76.3 1.3 2.9E-05 48.1 1.6 37 833-883 3-39 (309)
206 PRK04792 tolB translocation pr 76.3 89 0.0019 36.6 17.0 145 29-198 181-336 (448)
207 PHA02926 zinc finger-like prot 76.0 3 6.5E-05 42.8 3.8 43 831-885 168-212 (242)
208 PRK03629 tolB translocation pr 76.0 1.2E+02 0.0027 35.1 18.0 116 19-147 196-320 (429)
209 PF13429 TPR_15: Tetratricopep 75.9 4.2 9.2E-05 44.2 5.5 153 535-709 79-239 (280)
210 COG4946 Uncharacterized protei 75.9 72 0.0016 36.6 14.6 148 25-200 325-479 (668)
211 KOG3616 Selective LIM binding 75.7 21 0.00045 42.7 10.8 77 365-444 795-874 (1636)
212 TIGR03302 OM_YfiO outer membra 75.6 82 0.0018 32.9 15.1 48 371-418 43-97 (235)
213 TIGR03300 assembly_YfgL outer 75.6 57 0.0012 37.0 14.9 106 25-148 59-165 (377)
214 KOG0650 WD40 repeat nucleolar 75.1 15 0.00032 43.1 9.3 102 12-121 598-716 (733)
215 KOG4378 Nuclear protein COP1 [ 75.0 1.1E+02 0.0025 35.3 15.9 160 13-199 113-279 (673)
216 KOG0319 WD40-repeat-containing 75.0 32 0.0007 41.3 12.2 155 21-198 62-220 (775)
217 KOG0283 WD40 repeat-containing 74.8 69 0.0015 39.1 15.1 166 22-211 370-544 (712)
218 PF04841 Vps16_N: Vps16, N-ter 74.8 1.4E+02 0.0029 34.7 17.6 69 22-97 81-154 (410)
219 PF14763 HPS3_C: Hermansky-Pud 74.3 13 0.00029 40.1 8.2 93 694-790 247-345 (353)
220 KOG0978 E3 ubiquitin ligase in 74.0 4.7 0.0001 48.6 5.4 20 864-883 655-674 (698)
221 PF08553 VID27: VID27 cytoplas 73.8 85 0.0018 39.2 16.1 104 31-146 542-649 (794)
222 COG4847 Uncharacterized protei 73.5 4.4 9.4E-05 35.5 3.6 39 833-888 6-44 (103)
223 KOG0802 E3 ubiquitin ligase [P 73.4 2.1 4.4E-05 51.5 2.3 40 832-885 290-329 (543)
224 KOG0301 Phospholipase A2-activ 73.3 47 0.001 39.8 12.9 121 10-147 168-289 (745)
225 KOG0640 mRNA cleavage stimulat 73.3 21 0.00046 38.5 9.3 143 13-175 164-315 (430)
226 KOG0645 WD40 repeat protein [G 73.3 65 0.0014 34.4 12.7 139 21-174 14-159 (312)
227 KOG0650 WD40 repeat nucleolar 73.3 9.1 0.0002 44.7 7.1 113 14-141 559-675 (733)
228 PRK00178 tolB translocation pr 73.0 1.4E+02 0.003 34.6 17.5 145 29-198 161-317 (430)
229 PF06977 SdiA-regulated: SdiA- 72.9 78 0.0017 33.9 13.8 150 29-198 73-248 (248)
230 PRK15359 type III secretion sy 72.1 18 0.00038 35.1 8.2 79 370-448 33-120 (144)
231 TIGR02521 type_IV_pilW type IV 71.8 73 0.0016 32.2 13.4 50 369-418 73-126 (234)
232 TIGR02800 propeller_TolB tol-p 71.7 1.1E+02 0.0024 35.0 16.2 113 23-147 235-355 (417)
233 KOG2395 Protein involved in va 71.6 53 0.0012 38.3 12.5 56 127-195 440-495 (644)
234 KOG2106 Uncharacterized conser 71.2 37 0.00079 39.1 11.1 101 22-137 408-511 (626)
235 KOG0294 WD40 repeat-containing 71.1 41 0.0009 36.6 10.9 103 21-138 83-190 (362)
236 PF13424 TPR_12: Tetratricopep 70.8 4.7 0.0001 34.2 3.4 50 369-418 13-73 (78)
237 TIGR01063 gyrA DNA gyrase, A s 70.8 2.7E+02 0.0058 35.4 20.0 162 20-198 587-767 (800)
238 PF04762 IKI3: IKI3 family; I 70.7 15 0.00033 47.0 9.3 203 539-763 699-928 (928)
239 KOG0649 WD40 repeat protein [G 70.3 32 0.00069 36.1 9.5 109 23-143 64-183 (325)
240 KOG2096 WD40 repeat protein [G 70.3 23 0.0005 38.4 8.8 103 22-135 279-391 (420)
241 KOG0279 G protein beta subunit 69.9 1.6E+02 0.0036 31.6 25.8 284 19-358 13-309 (315)
242 KOG4328 WD40 protein [Function 69.8 51 0.0011 37.6 11.7 136 21-175 186-332 (498)
243 KOG2111 Uncharacterized conser 69.5 1.8E+02 0.0039 31.9 17.4 156 20-198 93-254 (346)
244 KOG2932 E3 ubiquitin ligase in 69.4 2.4 5.2E-05 45.2 1.4 35 834-886 91-125 (389)
245 KOG2139 WD40 repeat protein [G 69.3 1.9E+02 0.0042 32.2 16.5 111 22-148 196-313 (445)
246 PRK09782 bacteriophage N4 rece 69.2 1.7E+02 0.0036 38.1 18.0 12 732-743 249-260 (987)
247 KOG1912 WD40 repeat protein [G 69.1 2.9E+02 0.0062 34.1 21.1 223 111-364 56-306 (1062)
248 PRK00178 tolB translocation pr 69.0 2.2E+02 0.0049 32.8 18.8 115 21-147 198-320 (430)
249 PF13414 TPR_11: TPR repeat; P 68.7 6.5 0.00014 32.3 3.8 49 370-418 12-65 (69)
250 KOG0265 U5 snRNP-specific prot 68.6 70 0.0015 34.7 11.9 146 25-195 180-333 (338)
251 KOG2280 Vacuolar assembly/sort 68.6 2.9E+02 0.0063 34.0 33.0 104 24-135 86-191 (829)
252 KOG0310 Conserved WD40 repeat- 68.5 2.2E+02 0.0047 33.0 16.4 131 20-175 152-289 (487)
253 PRK10747 putative protoheme IX 68.2 2.3E+02 0.0049 32.6 27.0 275 372-708 95-385 (398)
254 TIGR02795 tol_pal_ybgF tol-pal 67.6 24 0.00052 31.9 7.8 48 371-418 12-66 (119)
255 PF14835 zf-RING_6: zf-RING of 67.3 1.4 2.9E-05 36.1 -0.7 34 832-883 6-39 (65)
256 KOG1900 Nuclear pore complex, 67.2 83 0.0018 40.7 14.0 121 36-174 94-251 (1311)
257 KOG0276 Vesicle coat complex C 66.8 1.9E+02 0.0041 34.6 15.7 151 24-198 60-213 (794)
258 PRK11189 lipoprotein NlpI; Pro 66.6 1.5E+02 0.0032 32.5 15.0 78 371-448 74-160 (296)
259 KOG1273 WD40 repeat protein [G 66.5 44 0.00095 36.3 10.0 89 68-175 26-116 (405)
260 PRK05560 DNA gyrase subunit A; 66.4 3.1E+02 0.0067 34.8 19.3 158 22-198 591-770 (805)
261 KOG1272 WD40-repeat-containing 66.0 14 0.0003 42.0 6.4 69 20-96 250-321 (545)
262 KOG1897 Damage-specific DNA bi 65.5 3.7E+02 0.0081 34.1 19.8 106 128-256 595-702 (1096)
263 KOG1840 Kinesin light chain [C 65.5 1.9E+02 0.0041 34.4 16.1 50 369-418 249-310 (508)
264 KOG2111 Uncharacterized conser 65.2 2.2E+02 0.0047 31.3 18.4 126 2-148 122-258 (346)
265 COG2976 Uncharacterized protei 64.7 21 0.00046 36.3 6.9 50 369-418 134-186 (207)
266 KOG0771 Prolactin regulatory e 64.7 1.1E+02 0.0024 34.5 13.1 30 19-48 144-173 (398)
267 KOG0306 WD40-repeat-containing 64.6 3.4E+02 0.0074 33.3 25.2 66 23-96 67-135 (888)
268 KOG2394 WD40 protein DMR-N9 [G 64.4 46 0.00099 38.7 10.2 113 23-145 221-361 (636)
269 KOG1587 Cytoplasmic dynein int 64.1 37 0.0008 40.7 10.0 115 24-148 350-474 (555)
270 KOG0277 Peroxisomal targeting 63.8 1.5E+02 0.0032 31.6 12.8 150 27-198 24-176 (311)
271 KOG0299 U3 snoRNP-associated p 63.5 2.1E+02 0.0045 32.9 14.9 30 111-147 328-357 (479)
272 KOG4497 Uncharacterized conser 63.1 64 0.0014 35.3 10.4 102 22-138 319-424 (447)
273 PRK11138 outer membrane biogen 63.0 1.8E+02 0.0039 33.3 15.5 103 25-147 250-354 (394)
274 KOG2879 Predicted E3 ubiquitin 62.9 3.9 8.4E-05 43.2 1.5 37 830-884 236-272 (298)
275 PRK10866 outer membrane biogen 62.7 1.2E+02 0.0025 32.4 12.8 49 370-418 41-96 (243)
276 smart00132 LIM Zinc-binding do 62.5 3.3 7.1E-05 29.8 0.6 29 835-880 1-29 (39)
277 PF04840 Vps16_C: Vps16, C-ter 62.5 30 0.00065 38.5 8.5 66 496-562 225-290 (319)
278 KOG1523 Actin-related protein 62.2 1.5E+02 0.0032 32.5 13.0 156 21-199 10-175 (361)
279 PF13429 TPR_15: Tetratricopep 61.6 52 0.0011 35.6 10.2 46 371-416 87-135 (280)
280 KOG0320 Predicted E3 ubiquitin 61.2 5.8 0.00012 39.3 2.2 35 834-885 132-166 (187)
281 KOG2003 TPR repeat-containing 61.2 44 0.00095 37.9 9.1 46 546-591 536-586 (840)
282 smart00744 RINGv The RING-vari 61.1 9.9 0.00021 29.6 3.1 23 865-887 14-41 (49)
283 PRK13979 DNA topoisomerase IV 61.1 2.7E+02 0.0058 36.0 17.3 160 27-199 512-688 (957)
284 KOG0827 Predicted E3 ubiquitin 61.1 4.5 9.7E-05 44.6 1.6 15 869-883 25-39 (465)
285 KOG0308 Conserved WD40 repeat- 61.1 76 0.0017 37.8 11.4 150 21-200 171-327 (735)
286 KOG2034 Vacuolar sorting prote 61.0 85 0.0018 39.0 12.2 48 513-560 363-415 (911)
287 COG5170 CDC55 Serine/threonine 60.8 23 0.00049 38.3 6.6 120 65-195 26-167 (460)
288 PF09295 ChAPs: ChAPs (Chs5p-A 60.4 46 0.00099 38.2 9.6 109 615-762 186-294 (395)
289 PF04097 Nic96: Nup93/Nic96; 60.2 4E+02 0.0086 32.7 18.3 35 675-709 418-452 (613)
290 PRK10049 pgaA outer membrane p 60.0 4.5E+02 0.0097 33.2 31.3 83 369-451 23-114 (765)
291 KOG1034 Transcriptional repres 59.5 9.8 0.00021 41.3 3.7 67 26-96 314-381 (385)
292 COG4105 ComL DNA uptake lipopr 59.0 2.5E+02 0.0055 30.0 14.4 145 392-558 35-191 (254)
293 KOG0321 WD40 repeat-containing 59.0 95 0.0021 37.0 11.6 117 24-147 221-348 (720)
294 KOG1332 Vesicle coat complex C 58.9 30 0.00066 36.3 7.0 119 65-200 11-136 (299)
295 cd00189 TPR Tetratricopeptide 58.8 21 0.00045 29.6 5.3 49 370-418 9-61 (100)
296 KOG0295 WD40 repeat-containing 58.4 88 0.0019 34.8 10.6 80 32-120 305-386 (406)
297 KOG0264 Nucleosome remodeling 58.4 2.5E+02 0.0054 32.1 14.4 152 31-199 240-403 (422)
298 COG5152 Uncharacterized conser 58.3 4.6 9.9E-05 40.3 1.0 35 835-888 198-232 (259)
299 PRK04792 tolB translocation pr 58.2 2.4E+02 0.0053 32.9 15.6 90 25-120 265-359 (448)
300 PF13570 PQQ_3: PQQ-like domai 57.9 14 0.0003 27.0 3.3 25 24-48 14-38 (40)
301 KOG0272 U4/U6 small nuclear ri 57.3 1.1E+02 0.0024 34.6 11.4 129 23-175 219-355 (459)
302 PRK11138 outer membrane biogen 57.2 1.1E+02 0.0024 35.0 12.4 103 26-144 289-392 (394)
303 COG5432 RAD18 RING-finger-cont 57.1 5.9 0.00013 41.9 1.6 35 831-884 23-57 (391)
304 PF12895 Apc3: Anaphase-promot 57.1 10 0.00022 32.8 2.9 44 373-416 1-50 (84)
305 PRK05561 DNA topoisomerase IV 56.7 3.5E+02 0.0077 33.9 17.1 153 26-198 502-664 (742)
306 TIGR01062 parC_Gneg DNA topois 56.4 3.7E+02 0.008 33.6 17.0 156 25-198 488-652 (735)
307 KOG4499 Ca2+-binding protein R 56.3 35 0.00075 35.7 6.8 56 3-59 196-252 (310)
308 KOG2395 Protein involved in va 56.2 3E+02 0.0064 32.5 14.7 100 33-146 396-500 (644)
309 PF11793 FANCL_C: FANCL C-term 56.2 3 6.4E-05 35.2 -0.6 42 833-888 2-46 (70)
310 KOG1058 Vesicle coat complex C 56.2 3.2E+02 0.007 33.6 15.5 78 750-828 396-480 (948)
311 KOG1007 WD repeat protein TSSC 55.9 61 0.0013 34.9 8.7 109 22-140 124-239 (370)
312 KOG0265 U5 snRNP-specific prot 55.9 1.7E+02 0.0036 31.9 11.9 123 31-175 102-226 (338)
313 KOG4649 PQQ (pyrrolo-quinoline 55.5 2.9E+02 0.0063 29.6 14.8 111 25-162 14-132 (354)
314 KOG0647 mRNA export protein (c 55.4 2.2E+02 0.0049 31.0 12.8 123 54-200 18-145 (347)
315 KOG0317 Predicted E3 ubiquitin 54.9 7.5 0.00016 41.5 2.0 37 829-884 235-271 (293)
316 PF12569 NARP1: NMDA receptor- 54.5 4.5E+02 0.0097 31.5 25.7 122 517-646 13-156 (517)
317 KOG1332 Vesicle coat complex C 54.5 1.2E+02 0.0026 32.0 10.4 112 28-148 20-136 (299)
318 KOG4227 WD40 repeat protein [G 54.4 1.2E+02 0.0027 33.8 11.0 95 22-121 106-205 (609)
319 PF09976 TPR_21: Tetratricopep 54.4 31 0.00066 33.3 6.2 93 372-470 22-129 (145)
320 KOG0772 Uncharacterized conser 54.2 79 0.0017 36.7 9.8 124 65-201 167-300 (641)
321 PRK10803 tol-pal system protei 54.2 43 0.00093 36.2 7.7 48 371-418 153-207 (263)
322 PF11768 DUF3312: Protein of u 54.1 4.4E+02 0.0096 31.4 16.1 69 111-199 260-328 (545)
323 KOG0973 Histone transcription 54.1 1.4E+02 0.0029 37.8 12.5 153 23-198 15-199 (942)
324 KOG0274 Cdc4 and related F-box 54.0 4.7E+02 0.01 31.5 17.4 145 22-198 250-398 (537)
325 KOG1524 WD40 repeat-containing 53.9 1.5E+02 0.0033 34.6 12.0 154 10-200 58-216 (737)
326 PF07719 TPR_2: Tetratricopept 53.4 26 0.00056 24.0 4.0 27 392-418 2-28 (34)
327 KOG0321 WD40 repeat-containing 53.0 2.8E+02 0.006 33.4 14.1 109 31-148 64-177 (720)
328 KOG0804 Cytoplasmic Zn-finger 53.0 7 0.00015 44.1 1.5 41 834-889 176-216 (493)
329 KOG3060 Uncharacterized conser 52.9 2.5E+02 0.0054 30.1 12.5 39 391-429 86-124 (289)
330 KOG1963 WD40 repeat protein [G 52.8 1.1E+02 0.0024 37.7 11.3 112 12-143 201-319 (792)
331 KOG0287 Postreplication repair 51.3 8.8 0.00019 41.6 1.8 36 832-886 22-57 (442)
332 PRK13979 DNA topoisomerase IV 51.3 5.3E+02 0.012 33.4 17.7 68 23-95 609-686 (957)
333 PF04840 Vps16_C: Vps16, C-ter 51.2 3.9E+02 0.0084 29.8 22.3 107 619-740 194-301 (319)
334 KOG3799 Rab3 effector RIM1 and 51.2 64 0.0014 30.3 7.1 18 828-845 60-77 (169)
335 PF12341 DUF3639: Protein of u 51.2 25 0.00054 23.7 3.2 22 23-44 3-24 (27)
336 smart00777 Mad3_BUB1_I Mad3/BU 51.1 74 0.0016 30.2 7.8 110 548-707 6-122 (125)
337 KOG0285 Pleiotropic regulator 50.4 4.1E+02 0.0088 29.8 14.8 150 22-198 152-305 (460)
338 PF08311 Mad3_BUB1_I: Mad3/BUB 49.9 18 0.00038 34.4 3.5 111 548-708 6-123 (126)
339 PRK05560 DNA gyrase subunit A; 49.9 5E+02 0.011 33.0 17.2 159 27-199 494-669 (805)
340 KOG0285 Pleiotropic regulator 49.8 2.6E+02 0.0057 31.2 12.5 110 24-148 196-309 (460)
341 KOG0284 Polyadenylation factor 49.6 47 0.001 37.3 7.0 114 66-200 97-210 (464)
342 KOG4497 Uncharacterized conser 49.3 96 0.0021 34.0 9.0 83 28-120 58-143 (447)
343 COG5110 RPN1 26S proteasome re 49.2 34 0.00074 39.8 6.1 95 641-739 188-296 (881)
344 KOG2110 Uncharacterized conser 48.7 4.4E+02 0.0095 29.6 16.5 156 22-198 88-246 (391)
345 PF12854 PPR_1: PPR repeat 48.2 25 0.00054 24.8 3.2 24 537-560 10-33 (34)
346 TIGR01063 gyrA DNA gyrase, A s 47.4 3.2E+02 0.0069 34.7 14.9 159 27-199 492-667 (800)
347 PRK10747 putative protoheme IX 47.2 3.3E+02 0.0071 31.3 14.2 26 393-418 265-290 (398)
348 PF07035 Mic1: Colon cancer-as 46.9 2.6E+02 0.0056 28.0 11.2 65 496-560 46-115 (167)
349 PF12894 Apc4_WD40: Anaphase-p 46.8 42 0.00091 25.9 4.5 31 111-147 12-42 (47)
350 TIGR00540 hemY_coli hemY prote 46.2 5.1E+02 0.011 29.7 23.1 103 552-657 247-359 (409)
351 KOG2445 Nuclear pore complex c 46.1 3.2E+02 0.007 30.0 12.2 103 65-175 13-122 (361)
352 KOG1063 RNA polymerase II elon 46.0 5.6E+02 0.012 31.2 15.2 157 23-198 527-697 (764)
353 KOG0286 G-protein beta subunit 45.9 4.3E+02 0.0094 28.8 17.8 151 23-199 57-216 (343)
354 PF11598 COMP: Cartilage oligo 45.8 84 0.0018 24.0 5.7 23 786-808 4-26 (45)
355 KOG0306 WD40-repeat-containing 45.7 4.3E+02 0.0094 32.5 14.4 146 24-197 417-577 (888)
356 TIGR02552 LcrH_SycD type III s 45.7 61 0.0013 30.3 6.7 49 370-418 26-78 (135)
357 PF03178 CPSF_A: CPSF A subuni 45.5 2.4E+02 0.0052 31.2 12.4 115 22-144 130-263 (321)
358 KOG2002 TPR-containing nuclear 45.2 5.6E+02 0.012 32.6 15.6 50 369-418 278-334 (1018)
359 KOG2005 26S proteasome regulat 45.2 58 0.0013 39.0 7.2 52 690-742 245-297 (878)
360 PF13934 ELYS: Nuclear pore co 45.1 50 0.0011 34.8 6.4 52 364-417 83-134 (226)
361 KOG0274 Cdc4 and related F-box 45.1 4.4E+02 0.0096 31.7 15.0 144 22-197 332-479 (537)
362 PRK01742 tolB translocation pr 44.7 3E+02 0.0064 32.0 13.4 111 20-145 202-323 (429)
363 KOG1240 Protein kinase contain 44.3 3.5E+02 0.0076 35.2 13.9 157 22-199 1049-1224(1431)
364 PF07754 DUF1610: Domain of un 44.1 10 0.00022 24.8 0.5 10 836-845 1-10 (24)
365 PF10571 UPF0547: Uncharacteri 44.0 8.3 0.00018 25.7 0.2 11 835-845 2-12 (26)
366 KOG0299 U3 snoRNP-associated p 43.5 4.5E+02 0.0097 30.4 13.4 155 21-199 286-455 (479)
367 COG5184 ATS1 Alpha-tubulin sup 43.4 5.8E+02 0.013 29.8 14.5 69 19-93 173-253 (476)
368 KOG1517 Guanine nucleotide bin 43.1 1.5E+02 0.0034 37.6 10.5 94 24-120 1214-1314(1387)
369 PF00780 CNH: CNH domain; Int 42.9 4.4E+02 0.0096 28.0 20.7 63 72-147 2-65 (275)
370 PF12451 VPS11_C: Vacuolar pro 42.8 12 0.00025 29.2 0.8 22 892-913 19-40 (49)
371 PLN03088 SGT1, suppressor of 42.6 66 0.0014 36.4 7.3 49 370-418 11-63 (356)
372 COG4257 Vgb Streptogramin lyas 42.6 4.8E+02 0.01 28.4 15.6 188 27-251 109-340 (353)
373 KOG0272 U4/U6 small nuclear ri 42.4 1.2E+02 0.0025 34.5 8.6 88 22-119 346-439 (459)
374 PF04841 Vps16_N: Vps16, N-ter 42.3 2.2E+02 0.0047 33.0 11.6 82 27-119 186-268 (410)
375 PRK12370 invasion protein regu 42.3 2.4E+02 0.0052 34.1 12.5 18 542-559 449-466 (553)
376 KOG0643 Translation initiation 42.0 2.5E+02 0.0054 30.2 10.5 103 65-192 10-114 (327)
377 KOG0269 WD40 repeat-containing 41.7 1.5E+02 0.0032 36.3 9.9 128 30-175 99-230 (839)
378 KOG4328 WD40 protein [Function 41.6 84 0.0018 35.9 7.5 102 24-138 282-391 (498)
379 KOG0642 Cell-cycle nuclear pro 41.5 4.5E+02 0.0097 31.2 13.3 71 23-97 346-425 (577)
380 PF00412 LIM: LIM domain; Int 41.3 5.7 0.00012 31.7 -1.1 28 836-880 1-28 (58)
381 TIGR01061 parC_Gpos DNA topois 41.2 8.3E+02 0.018 30.7 17.5 159 26-198 492-664 (738)
382 PF04363 DUF496: Protein of un 41.1 69 0.0015 27.9 5.2 36 768-803 38-73 (95)
383 PF04564 U-box: U-box domain; 41.0 14 0.0003 31.3 1.2 35 832-885 3-37 (73)
384 PF13525 YfiO: Outer membrane 40.9 4.1E+02 0.009 27.1 18.7 46 371-416 15-67 (203)
385 KOG0319 WD40-repeat-containing 40.8 6.7E+02 0.015 30.8 14.9 166 7-200 9-179 (775)
386 KOG4367 Predicted Zn-finger pr 40.6 25 0.00054 39.3 3.2 40 831-889 2-41 (699)
387 KOG0547 Translocase of outer m 39.9 96 0.0021 36.0 7.7 23 537-559 540-562 (606)
388 KOG0973 Histone transcription 39.7 4.2E+02 0.0091 33.7 13.7 132 24-174 132-274 (942)
389 PF13176 TPR_7: Tetratricopept 39.5 45 0.00098 23.7 3.5 23 395-417 3-25 (36)
390 PF13176 TPR_7: Tetratricopept 39.4 31 0.00068 24.5 2.6 22 538-559 3-24 (36)
391 KOG0296 Angio-associated migra 39.3 6E+02 0.013 28.6 17.6 152 22-200 65-220 (399)
392 KOG1408 WD40 repeat protein [F 39.2 3.3E+02 0.0072 33.2 12.0 112 22-146 597-713 (1080)
393 TIGR00756 PPR pentatricopeptid 39.2 33 0.0007 23.3 2.7 24 537-560 3-26 (35)
394 KOG1070 rRNA processing protei 39.0 6.2E+02 0.014 33.7 15.0 120 535-659 1531-1660(1710)
395 TIGR02795 tol_pal_ybgF tol-pal 38.8 47 0.001 29.9 4.5 50 369-418 47-103 (119)
396 KOG0553 TPR repeat-containing 38.7 34 0.00074 37.1 3.9 48 371-418 125-176 (304)
397 PRK09782 bacteriophage N4 rece 38.7 1.3E+02 0.0027 39.2 9.6 43 614-658 592-634 (987)
398 KOG2177 Predicted E3 ubiquitin 38.6 15 0.00033 40.1 1.4 33 832-883 12-44 (386)
399 PF10433 MMS1_N: Mono-function 38.4 3.2E+02 0.007 32.4 12.7 152 30-198 221-388 (504)
400 PF01535 PPR: PPR repeat; Int 38.2 34 0.00074 22.7 2.6 25 537-561 3-27 (31)
401 KOG2376 Signal recognition par 37.9 5.7E+02 0.012 30.8 13.6 65 376-445 356-425 (652)
402 PF04423 Rad50_zn_hook: Rad50 37.7 11 0.00023 30.0 -0.1 25 815-845 8-32 (54)
403 KOG0292 Vesicle coat complex C 37.6 9.6E+02 0.021 30.4 27.2 72 365-440 647-718 (1202)
404 PF07569 Hira: TUP1-like enhan 37.2 1.1E+02 0.0024 32.0 7.5 28 71-101 16-43 (219)
405 KOG0281 Beta-TrCP (transducin 37.0 4.2E+02 0.0091 29.5 11.5 31 22-52 278-309 (499)
406 PF10282 Lactonase: Lactonase, 36.6 6.4E+02 0.014 28.1 17.6 146 17-173 188-345 (345)
407 KOG0269 WD40 repeat-containing 36.4 93 0.002 37.9 7.2 84 31-122 189-275 (839)
408 KOG0302 Ribosome Assembly prot 35.8 3.5E+02 0.0076 30.5 10.9 116 66-198 258-376 (440)
409 KOG0313 Microtubule binding pr 35.6 6.6E+02 0.014 28.4 12.9 148 24-200 263-418 (423)
410 PF13181 TPR_8: Tetratricopept 35.4 71 0.0015 21.8 4.0 27 392-418 2-28 (34)
411 KOG4121 Nuclear pore complex, 35.2 3.2E+02 0.0068 34.8 11.5 122 394-565 775-897 (1128)
412 smart00564 PQQ beta-propeller 34.8 72 0.0016 21.7 3.9 24 28-51 3-27 (33)
413 KOG2376 Signal recognition par 34.7 8.9E+02 0.019 29.2 20.4 48 371-418 89-137 (652)
414 PRK02603 photosystem I assembl 34.6 65 0.0014 32.0 5.1 73 376-448 18-100 (172)
415 PF10168 Nup88: Nuclear pore c 34.5 4.1E+02 0.009 33.2 12.8 77 65-147 84-180 (717)
416 TIGR03302 OM_YfiO outer membra 34.3 5.4E+02 0.012 26.5 15.2 153 389-559 31-191 (235)
417 KOG0292 Vesicle coat complex C 34.3 6E+02 0.013 32.0 13.4 106 23-148 11-125 (1202)
418 PF13041 PPR_2: PPR repeat fam 34.1 40 0.00086 25.8 2.7 24 537-560 6-29 (50)
419 PF14781 BBS2_N: Ciliary BBSom 33.7 4.4E+02 0.0096 25.4 11.4 84 101-198 40-123 (136)
420 PF13512 TPR_18: Tetratricopep 33.2 60 0.0013 31.5 4.2 46 371-416 20-72 (142)
421 PF13525 YfiO: Outer membrane 33.1 68 0.0015 33.0 5.1 153 390-558 4-165 (203)
422 KOG3630 Nuclear pore complex, 33.1 5.1E+02 0.011 33.6 12.8 53 110-174 198-252 (1405)
423 smart00036 CNH Domain found in 33.1 1.7E+02 0.0037 32.3 8.5 68 116-198 3-71 (302)
424 PF04641 Rtf2: Rtf2 RING-finge 33.0 24 0.00053 38.0 1.8 35 833-883 113-148 (260)
425 COG1729 Uncharacterized protei 32.9 92 0.002 33.4 6.0 48 371-418 151-205 (262)
426 PF13428 TPR_14: Tetratricopep 32.8 73 0.0016 23.6 3.9 26 393-418 3-28 (44)
427 KOG1007 WD repeat protein TSSC 32.8 3.4E+02 0.0073 29.6 9.8 102 30-143 182-286 (370)
428 PF10602 RPN7: 26S proteasome 32.7 1.3E+02 0.0029 30.3 6.9 55 375-429 17-75 (177)
429 KOG1063 RNA polymerase II elon 32.6 9.2E+02 0.02 29.5 14.3 116 23-146 574-699 (764)
430 PF03704 BTAD: Bacterial trans 32.4 62 0.0013 31.1 4.4 35 391-425 62-96 (146)
431 PF02239 Cytochrom_D1: Cytochr 32.4 3.2E+02 0.0069 31.1 10.8 80 31-120 5-87 (369)
432 PF06977 SdiA-regulated: SdiA- 32.4 6.5E+02 0.014 26.9 23.3 118 66-199 22-148 (248)
433 PF09295 ChAPs: ChAPs (Chs5p-A 32.4 80 0.0017 36.3 5.8 73 365-437 204-285 (395)
434 PF13414 TPR_11: TPR repeat; P 32.0 66 0.0014 26.1 3.9 28 391-418 3-30 (69)
435 PRK05423 hypothetical protein; 31.9 1.1E+02 0.0024 27.1 5.1 38 766-803 43-80 (104)
436 PF11789 zf-Nse: Zinc-finger o 31.8 19 0.00041 29.0 0.5 33 833-883 11-43 (57)
437 KOG0547 Translocase of outer m 31.6 5.3E+02 0.011 30.3 11.8 46 710-762 517-563 (606)
438 PF02318 FYVE_2: FYVE-type zin 31.4 53 0.0011 30.7 3.5 36 832-881 53-88 (118)
439 PLN03088 SGT1, suppressor of 31.2 54 0.0012 37.1 4.3 49 370-418 45-97 (356)
440 PLN00033 photosystem II stabil 31.1 8.7E+02 0.019 28.0 17.3 124 31-174 249-379 (398)
441 COG2956 Predicted N-acetylgluc 31.1 7.9E+02 0.017 27.5 18.3 59 369-427 77-143 (389)
442 PF07649 C1_3: C1-like domain; 31.0 37 0.00081 23.2 1.8 28 835-879 2-30 (30)
443 KOG0263 Transcription initiati 30.5 1.5E+02 0.0032 36.2 7.6 66 22-95 578-646 (707)
444 KOG2314 Translation initiation 30.5 5.3E+02 0.011 30.6 11.6 134 43-200 429-575 (698)
445 PRK14720 transcript cleavage f 30.3 8.9E+02 0.019 31.1 14.7 114 539-659 121-249 (906)
446 COG5574 PEX10 RING-finger-cont 30.2 25 0.00054 37.2 1.2 32 832-882 214-245 (271)
447 cd00189 TPR Tetratricopeptide 30.2 59 0.0013 26.7 3.5 49 370-418 43-95 (100)
448 PF00515 TPR_1: Tetratricopept 30.1 96 0.0021 21.2 3.9 27 392-418 2-28 (34)
449 PRK14574 hmsH outer membrane p 30.0 1.3E+03 0.027 29.5 17.3 86 365-451 38-133 (822)
450 TIGR02658 TTQ_MADH_Hv methylam 29.8 6.9E+02 0.015 28.3 12.6 124 31-169 206-349 (352)
451 KOG4236 Serine/threonine prote 29.6 17 0.00036 42.3 -0.2 43 833-889 156-198 (888)
452 PF14938 SNAP: Soluble NSF att 29.4 4E+02 0.0087 28.8 10.6 142 374-559 28-180 (282)
453 KOG0640 mRNA cleavage stimulat 29.2 3.6E+02 0.0079 29.5 9.5 155 24-200 115-291 (430)
454 KOG1523 Actin-related protein 29.1 3.6E+02 0.0077 29.8 9.5 96 66-175 11-110 (361)
455 PRK01029 tolB translocation pr 29.1 8.2E+02 0.018 28.4 13.7 114 25-148 284-405 (428)
456 PF13540 RCC1_2: Regulator of 28.9 1.5E+02 0.0033 20.2 4.6 25 24-48 1-25 (30)
457 PF12234 Rav1p_C: RAVE protein 28.7 85 0.0018 38.2 5.4 72 649-725 435-508 (631)
458 smart00249 PHD PHD zinc finger 28.7 31 0.00067 25.5 1.2 15 868-882 18-32 (47)
459 KOG1126 DNA-binding cell divis 28.5 5.6E+02 0.012 31.1 11.8 139 544-705 465-612 (638)
460 PRK15359 type III secretion sy 28.3 75 0.0016 30.7 4.2 49 370-418 67-119 (144)
461 PRK10370 formate-dependent nit 28.0 1.9E+02 0.004 29.7 7.2 90 364-453 72-177 (198)
462 PF07282 OrfB_Zn_ribbon: Putat 28.0 62 0.0013 26.9 3.0 36 833-881 28-63 (69)
463 KOG3881 Uncharacterized conser 27.8 3.1E+02 0.0067 31.0 8.9 79 31-119 216-299 (412)
464 PF13360 PQQ_2: PQQ-like domai 27.7 6.7E+02 0.015 25.6 13.3 37 24-60 115-152 (238)
465 TIGR02552 LcrH_SycD type III s 27.7 86 0.0019 29.3 4.4 49 370-418 60-112 (135)
466 KOG2377 Uncharacterized conser 27.6 2.8E+02 0.0061 32.0 8.7 112 20-141 65-179 (657)
467 PRK01029 tolB translocation pr 27.5 3.2E+02 0.0069 31.8 9.9 91 24-120 329-424 (428)
468 COG5219 Uncharacterized conser 27.5 33 0.00072 42.4 1.7 49 829-889 1465-1513(1525)
469 PRK04043 tolB translocation pr 27.0 6.1E+02 0.013 29.4 12.1 113 24-148 190-311 (419)
470 COG3071 HemY Uncharacterized e 27.0 6.2E+02 0.013 28.8 11.2 50 369-418 161-214 (400)
471 KOG2005 26S proteasome regulat 26.8 3.2E+02 0.0069 33.2 9.2 124 564-709 178-311 (878)
472 COG2888 Predicted Zn-ribbon RN 26.8 30 0.00065 27.9 0.8 31 833-879 9-42 (61)
473 KOG0275 Conserved WD40 repeat- 26.8 8.9E+02 0.019 26.7 12.2 105 30-148 359-469 (508)
474 KOG1814 Predicted E3 ubiquitin 26.6 47 0.001 37.4 2.6 33 836-884 187-219 (445)
475 CHL00033 ycf3 photosystem I as 26.1 1.1E+02 0.0023 30.2 5.0 48 371-418 45-99 (168)
476 PRK14574 hmsH outer membrane p 25.9 8.2E+02 0.018 31.2 13.6 122 516-639 76-210 (822)
477 KOG2727 Rab3 GTPase-activating 25.9 3.5E+02 0.0076 34.1 9.6 63 105-176 73-140 (1244)
478 COG3063 PilF Tfp pilus assembl 25.8 2.6E+02 0.0057 29.5 7.6 81 371-451 113-204 (250)
479 PF13812 PPR_3: Pentatricopept 25.8 88 0.0019 21.1 3.1 25 536-560 3-27 (34)
480 PF14870 PSII_BNR: Photosynthe 25.7 9.3E+02 0.02 26.6 16.6 106 24-144 107-213 (302)
481 KOG1070 rRNA processing protei 25.7 1.4E+03 0.031 30.7 15.1 77 376-456 1519-1600(1710)
482 PF11571 Med27: Mediator compl 25.6 24 0.00052 31.3 0.1 32 833-878 54-89 (90)
483 PF11768 DUF3312: Protein of u 25.3 2.6E+02 0.0056 33.2 8.3 65 24-97 262-328 (545)
484 PF02239 Cytochrom_D1: Cytochr 25.1 1E+03 0.023 26.9 15.3 62 31-100 48-110 (369)
485 KOG4739 Uncharacterized protei 25.0 36 0.00078 35.7 1.3 30 835-881 5-34 (233)
486 COG5222 Uncharacterized conser 24.9 45 0.00097 35.6 1.9 33 834-884 275-307 (427)
487 PRK04043 tolB translocation pr 24.9 1.1E+03 0.024 27.2 17.8 106 30-148 154-267 (419)
488 PF14559 TPR_19: Tetratricopep 24.7 1.7E+02 0.0038 23.4 5.2 21 540-560 31-51 (68)
489 KOG4547 WD40 repeat-containing 24.6 1.2E+03 0.027 27.7 15.3 118 32-176 71-195 (541)
490 KOG1409 Uncharacterized conser 24.2 1E+03 0.023 26.6 15.9 152 24-198 71-225 (404)
491 PF00130 C1_1: Phorbol esters/ 24.0 30 0.00065 27.0 0.4 36 831-881 9-45 (53)
492 KOG0300 WD40 repeat-containing 23.8 9.1E+02 0.02 26.6 11.2 95 28-139 281-379 (481)
493 KOG2164 Predicted E3 ubiquitin 23.7 35 0.00075 39.6 0.9 57 833-918 186-242 (513)
494 KOG1408 WD40 repeat protein [F 23.6 1.3E+03 0.027 28.6 13.2 112 64-198 595-711 (1080)
495 smart00028 TPR Tetratricopepti 23.5 1.1E+02 0.0024 19.1 3.2 26 393-418 3-28 (34)
496 KOG0826 Predicted E3 ubiquitin 23.3 43 0.00093 36.6 1.5 38 833-888 300-337 (357)
497 PF13432 TPR_16: Tetratricopep 23.3 1.1E+02 0.0024 24.5 3.7 23 396-418 2-24 (65)
498 PF13431 TPR_17: Tetratricopep 23.2 98 0.0021 21.8 2.9 32 377-411 2-33 (34)
499 PF00400 WD40: WD domain, G-be 23.1 2.7E+02 0.0058 19.4 6.4 34 160-198 6-39 (39)
500 COG2956 Predicted N-acetylgluc 23.0 1.1E+03 0.024 26.4 15.7 54 365-418 145-207 (389)
No 1
>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=3.2e-126 Score=1082.15 Aligned_cols=835 Identities=42% Similarity=0.686 Sum_probs=721.4
Q ss_pred CcceehhHHHHHhhcCCCceeEEEEeCCEEEEEecCCeEEEEeC-CCCCceeeEcCCCCCCccceeEEEeCCCCCeEEEE
Q 002318 5 RQVFQVDVLERYAAKGRGVITCMSAGNDVIVLGTSKGWLIRHDF-GAGDSYDIDLSAGRPGEQSIHKVFVDPGGSHCIAT 83 (936)
Q Consensus 5 ~~~f~~~~~~~~~~~~~~~i~~l~v~~n~l~l~~~~g~l~ridl-~~~~~~~~~l~~~~~~~~~i~~i~lDp~G~hlli~ 83 (936)
+++|..+.+...+|- ..|.+++|++|++|+.+. ++| + .+.+..++++++.. .++++++|+||+|+|+++.
T Consensus 23 ~~~~s~~~~~~~~~~--~~~~~l~vs~~~~i~~l~---l~~--~~~~~~~~d~~l~k~~--~~~~~k~f~dp~Gs~i~ia 93 (911)
T KOG2034|consen 23 FLTFSREKIHLKVPS--EDIDQLAVSKNWLIMRLG---LLD--LGRANNPIDCELGKKL--EAKIHKMFLDPTGSHILIA 93 (911)
T ss_pred hhhccccceEEecCC--ccceeEEeecceEEEEee---ccc--cCCCCCccccccccee--cceeeEEEeCCCCcEEEEE
Confidence 345555555554442 236777777777777766 333 6 56656677777654 4699999999999999999
Q ss_pred eecCCCccEEEEecCCCCceeccCCCCceEEEEEecCCCCCCCCcceEEEEcCCCcEEEEEEecCCcccceeeEEeeeC-
Q 002318 84 IVGSGGAETFYTHAKWSKPRVLSKLKGLVVNAVAWNRQQITEASTKEIILGTDTGQLHEMAVDEKDKREKYIKLLFELN- 162 (936)
Q Consensus 84 ~~~~~~g~~~Y~~~~~~k~k~L~klkg~~I~sVaw~~~~~~~~st~~iLiGt~~G~i~e~~i~~~~~~~~~~k~v~~l~- 162 (936)
++ ++.++|+|.. .|+|.|+|+||+.|++|+|. .++++|+++++||.+|.++|..+...++...+.+.++.+-
T Consensus 94 ~~---s~~~m~t~~~-~k~r~Ltk~k~~~veav~w~---ite~st~~~li~t~qg~~~e~~~~~~~~~~~q~~~l~~l~~ 166 (911)
T KOG2034|consen 94 TT---STEYLYTHDN-QKVRVLTKLKGQLVEAVAWW---ITESSTLPILIGTIQGFIFELELPKNKKGIAQIKRLINLIL 166 (911)
T ss_pred ec---CCceEEeccc-CceeeHHHHhhhhHHHHHhh---ccCCCchhhhhccccceEEEeccCccccchhhHHHHHhhhc
Confidence 99 7899999987 78999999999999999994 6788999999999999999999877654444444444332
Q ss_pred -CCCCceeeEEEEeeccCCCceEEEEEECCCeEEEEecC-----CchHHHHhhhhcccccccccCCCcCCCcceeee---
Q 002318 163 -ELPEAFMGLQMETASLSNGTRYYVMAVTPTRLYSFTGF-----GSLDTVFASYLDRAVHFMELPGEILNSELHFFI--- 233 (936)
Q Consensus 163 -~~~~~I~gi~~~~~~~~~~~~~~i~ast~~rly~f~~~-----~~l~~~f~~~~~~~~~~~el~~~~~~s~~~~~~--- 233 (936)
..|.||.++.-. +|++++++|+.|+|.|.++ .+|...|..|.+.++++.+.+.+.+.+.+.+++
T Consensus 167 ~~e~~pv~~Le~~-------~r~~~~~tt~q~il~f~~t~~a~~~~f~~~f~~~~~~~h~i~s~k~~~~~~~~~f~~~~~ 239 (911)
T KOG2034|consen 167 SNEPAPVVKLEGE-------RRYFVSATTPQRILMFLATEGAEFTSFSPFFAGYMELEHPIRSFKSDEGFSNLRFSTMPK 239 (911)
T ss_pred cCCCCceeeeccc-------cceEEEEechhhhHhhHhhhcCcccccchhhhcccccCCccccccchhhhhhheeecCCc
Confidence 226778766643 4899999999999999865 357788888877767777766655555555543
Q ss_pred ccCCCceEEEeecCceEEEEeccCCCCCCCCCCCccccccccccccccCCCCCCCCccccccCCceEEEEECCEEEEEec
Q 002318 234 KQRRAVHFAWLSGAGIYHGGLNFGAQRSSPNGDENFVENKALLSYSKLSEGAEAVKPGSMAVSEYHFLLLMGNKVKVVNR 313 (936)
Q Consensus 234 ~~~~~~~faW~t~~gi~~g~i~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~p~si~lT~fHillL~~~~l~ivn~ 313 (936)
..+.|..+||+++.||-+|.+....+++ ...+.+.-.++++ +.+++..++|.+|++|+||++||+.|++.+||+
T Consensus 240 ~~a~pk~~aw~~~~gi~~G~~~~~~n~~-----~~ll~~e~~~e~~-~~eg~~~~~p~~ivLT~yH~LLl~~d~V~avs~ 313 (911)
T KOG2034|consen 240 NIAEPKTWAWKSPDGINFGNVNIYANRD-----QDLLEEEFNIELP-LGEGRKLEPPKAIVLTEFHFLLLYADRVLAVSL 313 (911)
T ss_pred cchhHHHHHhhCCCcceeccccccCCch-----HHHHHHhhhhccc-cccCCCCCCcceehHHHHHHHHHhcCceeeeec
Confidence 2356899999999999999887643221 1122221112222 223333467999999999999999999999999
Q ss_pred CCCcEEEEEEecCCCCCcccceeEEEeecCCCeEEEEeCCcEEEEEcccchhhHHHHHHchhhHHHHHHhcCC-hhhHHH
Q 002318 314 ISEQIIEELQFDQTSDSISRGIIGLCSDATAGVFYAYDQNSIFQVSVNDEGRDMWKVYLDMKEYAAALANCRD-PLQRDQ 392 (936)
Q Consensus 314 l~~~vv~~~~~~~~~~~~~~~~~gl~~D~~~~~~~i~S~~~i~~~~~~~e~~~~W~~ll~~~~f~~Al~~~~~-~~~~~~ 392 (936)
+|+++|+++.++. +..|.++|+|+|...++||+||.+.++++.+.+|.|++|+.|+++|+|++|+++|++ |..++.
T Consensus 314 Ln~~vI~~~~~n~---s~~g~~LGlv~D~va~~~w~YTq~~vf~~~vndE~R~vWk~yLd~g~y~kAL~~ar~~p~~le~ 390 (911)
T KOG2034|consen 314 LNGEVIYRDQFNE---SELGGILGLVSDSVAETFWLYTQTSVFEYGVNDEARDVWKTYLDKGEFDKALEIARTRPDALET 390 (911)
T ss_pred cCccccchhccCc---hhcccceeeeeccccceEEEEEeceeeeeeeccchHHHHHHHHhcchHHHHHHhccCCHHHHHH
Confidence 9999999999964 247899999999999999999999999999999999999999999999999999997 589999
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhcCCCChHHHHHHhcCcChHHHHHHHHHHHhhcccCchhHHHHHHHHHHHHHHHHH
Q 002318 393 VYLVQAEAAFATKDFHRAASFYAKINYILSFEEITLKFISVSEQDALRTFLLRKLDNLAKDDKCQITMISTWATELYLDK 472 (936)
Q Consensus 393 I~~~~~~~L~~~g~y~~Aa~~y~~~~~~~~~E~v~lkFl~~~~~~~L~~YL~~~l~~l~~~~~~~~~lL~~Wl~ely~~~ 472 (936)
|+.+|||++|+.++|..||++||++. .+||+|+|||+..++.++|..||.+||+++++.+++|+++|++|++|+|+.+
T Consensus 391 Vl~~qAdf~f~~k~y~~AA~~yA~t~--~~FEEVaLKFl~~~~~~~L~~~L~KKL~~lt~~dk~q~~~Lv~WLlel~L~~ 468 (911)
T KOG2034|consen 391 VLLKQADFLFQDKEYLRAAEIYAETL--SSFEEVALKFLEINQERALRTFLDKKLDRLTPEDKTQRDALVTWLLELYLEQ 468 (911)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHhh--hhHHHHHHHHHhcCCHHHHHHHHHHHHhhCChHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999998 8999999999999999999999999999999999999999999999999999
Q ss_pred HhhhhcccchhhccchHHHHHHHHHHHHHHhcccccCCHHHHHHHHHHcCChhHHHHHHHhhhhHHHHHHHHHhcccHHH
Q 002318 473 INRLLLEDDTALENRSSEYQSIMREFRAFLSDCKDVLDEATTMKLLESYGRVEELVFFASLKEQHEIVVHHYIQQGEAKK 552 (936)
Q Consensus 473 l~~~~~e~~~~~~~~~~~~~~~~~~l~~fl~~~~~~ld~~tv~~ll~~~g~~e~~l~~a~~~~dy~~ll~~yi~~~~~~~ 552 (936)
||+++..+....++...+++....+|..|+..++..+|.+++|+++.+||+.+++++||.+++||+.|+.+|+++++|++
T Consensus 469 Ln~l~~~de~~~en~~~~~~~~~re~~~~~~~~~~~~nretv~~l~~~~~~~e~ll~fA~l~~d~~~vv~~~~q~e~yee 548 (911)
T KOG2034|consen 469 LNDLDSTDEEALENWRLEYDEVQREFSKFLVLHKDELNRETVYQLLASHGRQEELLQFANLIKDYEFVVSYWIQQENYEE 548 (911)
T ss_pred HhcccccChhHHHHHHHHHHHHHHHHHHHHHhhHHhhhHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99996444344456667778888889999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhCCCCchhhHHhhHHHHHhHChHHHHHHHHccCCCCCCcchhHhhhcCCCCCCCCChHHHHHHHHHHHhhcCCCC
Q 002318 553 ALQMLRKPAVPIDLQYKFAPDLIMLDAYETVESWMTTNNLNPRKLIPAMMRYSSEPHAKNETHEVIKYLEFCVHRLHNED 632 (936)
Q Consensus 553 AL~~L~~~~d~~~li~k~~~~Ll~~~p~~ti~ll~~~~~ld~~~li~~L~~~~~~~~~~~~~~~~~~YLe~li~~~~~~~ 632 (936)
||++|.++.+ .++.|+|++.|+.+.|.+||+.|++.+.++|.+++|.+++|....+.....+.+++||++|+...+..+
T Consensus 549 aLevL~~~~~-~el~yk~ap~Li~~~p~~tV~~wm~~~d~~~~~li~~~L~~~~~~~~~~~~~~~i~yl~f~~~~l~~~~ 627 (911)
T KOG2034|consen 549 ALEVLLNQRN-PELFYKYAPELITHSPKETVSAWMAQKDLDPNRLIPPILSYFSNWHSEYEENQAIRYLEFCIEVLGMTN 627 (911)
T ss_pred HHHHHHhccc-hhhHHHhhhHHHhcCcHHHHHHHHHccccCchhhhHHHHHHHhcCCccccHHHHHHHHHHHHHhccCcC
Confidence 9999999966 699999999999999999999999999999999999999998777766788999999999999999999
Q ss_pred HhHHHHHHHHhhcCCChHHHHHHHHHhhCCCCCCCCcccCChHHHHHHHHhcCcceeeehhhhccccHHHHHHHHHhcCH
Q 002318 633 PGVHNLLLSLYAKQEDDSALLRFLQCKFGKGRENGPEFFYDPKYALRLCLKEKRMRACVHIYGMMSMHEEAVALALQVDP 712 (936)
Q Consensus 633 ~~~hn~ll~Ly~~~~~~~~Ll~fL~~~~~~~~~~~~~~~yd~~~aLrlc~~~~~~~~~v~L~~~~g~~~eAl~l~l~~di 712 (936)
+.+||.++.||+++. ++.++.+|... +. .+...+||+++|+|+|.+++..+++|+||++|++|++||++|++.|+
T Consensus 628 ~~ihn~ll~lya~~~-~~~ll~~le~~-~~---~~~~~~YDl~~alRlc~~~~~~ra~V~l~~~l~l~~~aVdlAL~~d~ 702 (911)
T KOG2034|consen 628 PAIHNSLLHLYAKHE-RDDLLLYLEII-KF---MKSRVHYDLDYALRLCLKFKKTRACVFLLCMLNLFEDAVDLALQFDI 702 (911)
T ss_pred HHHHHHHHHHhhcCC-ccchHHHHHHH-hh---ccccceecHHHHHHHHHHhCccceeeeHHHHHHHHHHHHHHHhhcCH
Confidence 999999999999987 56777777765 11 12237899999999999999999999999999999999999999999
Q ss_pred HHHHHHhhccCCCHHHHHHHHHHHHHHHhhcccCCChHhHHHHHHHHHhcCCccccccccCcCCCCcchhHHHHHHHHHH
Q 002318 713 ELAMAEADKVEDDEDLRKKLWLMVAKHVIEQEKGTKRENIRKAIAFLKETDGLLKIEDILPFFPDFALIDDFKEAICSSL 792 (936)
Q Consensus 713 ~lA~~~a~~~~~d~~~~kkLWl~ll~~~i~~~~~~~~~~i~~~l~~L~~~~~~L~i~diL~~~p~~~~I~~~Kd~I~~~L 792 (936)
++|+..|+.+++|+++||+||+++++|++.+. .++++++.+|+++ ++|+|+|+||+|||+++|++||+.||+.|
T Consensus 703 dlak~~A~~~ee~e~lrKkLWLkIAkh~v~~~-----~~ikk~i~~Lk~~-~lLkiedlLpffpdf~~id~~keaic~~L 776 (911)
T KOG2034|consen 703 DLAKVIANDPEEDEDLRKKLWLKIAKHVVKQE-----NDIKKAIRFLKEN-ELLTIEDLLPFFPDFTKIDNLKEAICDFL 776 (911)
T ss_pred HHHhhhhcChhhHHHHHHHHHHHHHHHHHHhh-----ccHHHHHHHhccC-cccchhhhhccccchhhhhhhHHHHHHHH
Confidence 99999999999999999999999999999885 5899999999995 69999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccEeecccccccccchhhhhcccccccccccCCCCCCCCEEEEcCCC
Q 002318 793 DDYNKQIEQLKQEMNDATHGADNIRNDISALAQRYAVIDRDEDCGVCRRKILVAGRDYRMARGYASVGPMAPFYVFPCGH 872 (936)
Q Consensus 793 ~~y~~~i~~l~~~m~~~~~~~~~i~~~i~~~~~r~~~i~~~~~C~~C~k~L~~~~~~~~~~~~~~~~~~~~~fvvFpCgH 872 (936)
++|+.+|++++.+|.+++..+..|+.+++++++||.+++|++.|.+|+++|.. + ||+||||||
T Consensus 777 ~~~n~rieel~~em~eat~~a~~I~~~~~~l~~ry~v~ep~d~C~~C~~~ll~-----~------------pF~vf~CgH 839 (911)
T KOG2034|consen 777 EDYNKRIEELQEEMIEATELADEIRTEISKLRQRYRVLEPQDSCDHCGRPLLI-----K------------PFYVFPCGH 839 (911)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhcceEEecCccchHHhcchhhc-----C------------cceeeeccc
Confidence 99999999999999999999999999999999999999999999999999999 7 999999999
Q ss_pred hhHHHhHHHHHhhcCCcc---------chHHHHHHHhhh
Q 002318 873 AFHAQCLIAHVTQCTNET---------QVSVVDIVLSYK 902 (936)
Q Consensus 873 ~fH~~CL~~~~~~~~~~~---------~~~~~~~~~~~~ 902 (936)
+||.+|+...+.+.++.+ +.+++++...++
T Consensus 840 ~FH~~Cl~~~v~~~~~~~~~~~~a~~l~~k~~~l~~~l~ 878 (911)
T KOG2034|consen 840 CFHRDCLIRHVLSLLSEELSQKTAIELQAKRKKLKNELE 878 (911)
T ss_pred hHHHHHHHHHHHccccHhhhhhhhhhhhhHHHHHHHHHH
Confidence 999999999998887754 345666666666
No 2
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=2.6e-67 Score=590.97 Aligned_cols=712 Identities=19% Similarity=0.258 Sum_probs=534.0
Q ss_pred CCceeEEEEeCCEEEEEecCCeEEEEeCCCCCceeeEcCCCCCCccceeEEEeCCCCCeEEEEeecCCCccEEEEecCCC
Q 002318 21 RGVITCMSAGNDVIVLGTSKGWLIRHDFGAGDSYDIDLSAGRPGEQSIHKVFVDPGGSHCIATIVGSGGAETFYTHAKWS 100 (936)
Q Consensus 21 ~~~i~~l~v~~n~l~l~~~~g~l~ridl~~~~~~~~~l~~~~~~~~~i~~i~lDp~G~hlli~~~~~~~g~~~Y~~~~~~ 100 (936)
+|+|+|.+|+..++++|+++|.++..+.+.+.-..+. + + .+ |-.|+|+..|++ ||.+--....+.
T Consensus 39 ~D~is~~av~~~~~~~GtH~g~v~~~~~~~~~~~~~~-~-s----~~------~~~Gey~asCS~---DGkv~I~sl~~~ 103 (846)
T KOG2066|consen 39 NDAISCCAVHDKFFALGTHRGAVYLTTCQGNPKTNFD-H-S----SS------ILEGEYVASCSD---DGKVVIGSLFTD 103 (846)
T ss_pred hhHHHHHHhhcceeeeccccceEEEEecCCccccccc-c-c----cc------ccCCceEEEecC---CCcEEEeeccCC
Confidence 3689999999999999999999999999333211121 1 1 11 889999999999 998866655555
Q ss_pred CceeccCCCCceEEEEEecCCCCCCCCcceEEEEcCCCc-EEEEEEecCCcccceeeEEeeeCCCCCceeeEEEEeeccC
Q 002318 101 KPRVLSKLKGLVVNAVAWNRQQITEASTKEIILGTDTGQ-LHEMAVDEKDKREKYIKLLFELNELPEAFMGLQMETASLS 179 (936)
Q Consensus 101 k~k~L~klkg~~I~sVaw~~~~~~~~st~~iLiGt~~G~-i~e~~i~~~~~~~~~~k~v~~l~~~~~~I~gi~~~~~~~~ 179 (936)
+-...-. .+++|+|||++|. .+..+++.|+.|+..|. ++|..+-+ +.+.+ .+.+..|||.+|.|..
T Consensus 104 ~~~~~~d-f~rpiksial~Pd-~~~~~sk~fv~GG~aglvL~er~wlg------nk~~v-~l~~~eG~I~~i~W~g---- 170 (846)
T KOG2066|consen 104 DEITQYD-FKRPIKSIALHPD-FSRQQSKQFVSGGMAGLVLSERNWLG------NKDSV-VLSEGEGPIHSIKWRG---- 170 (846)
T ss_pred ccceeEe-cCCcceeEEeccc-hhhhhhhheeecCcceEEEehhhhhc------Cccce-eeecCccceEEEEecC----
Confidence 4333223 4689999999954 45567899999999973 23444443 34555 5666679999999983
Q ss_pred CCceEEEEEEC-CCeEEEEecCCchHHHHhhhhcccccccccCCCcCCCcceeeeccCCCceEEEeecCceEEEEeccCC
Q 002318 180 NGTRYYVMAVT-PTRLYSFTGFGSLDTVFASYLDRAVHFMELPGEILNSELHFFIKQRRAVHFAWLSGAGIYHGGLNFGA 258 (936)
Q Consensus 180 ~~~~~~i~ast-~~rly~f~~~~~l~~~f~~~~~~~~~~~el~~~~~~s~~~~~~~~~~~~~faW~t~~gi~~g~i~~~~ 258 (936)
.+++||+. +.++|.-..+.. +..+|++.+ ..+++.+|+.+.|++...+++||.+..
T Consensus 171 ---~lIAWand~Gv~vyd~~~~~~--------------l~~i~~p~~-----~~R~e~fpphl~W~~~~~LVIGW~d~v- 227 (846)
T KOG2066|consen 171 ---NLIAWANDDGVKVYDTPTRQR--------------LTNIPPPSQ-----SVRPELFPPHLHWQDEDRLVIGWGDSV- 227 (846)
T ss_pred ---cEEEEecCCCcEEEeccccce--------------eeccCCCCC-----CCCcccCCCceEecCCCeEEEecCCeE-
Confidence 69999986 889996543222 223332221 123456789999999999999998753
Q ss_pred CCCCCCCCCcccccccccccc--ccCCCCCCCCccccccCCceEEEEE--CCEEEEEecCCCcE--EEEEEecC------
Q 002318 259 QRSSPNGDENFVENKALLSYS--KLSEGAEAVKPGSMAVSEYHFLLLM--GNKVKVVNRISEQI--IEELQFDQ------ 326 (936)
Q Consensus 259 ~~~~~~~~~~~~~~~~l~~~~--~l~~~~~~~~p~si~lT~fHillL~--~~~l~ivn~l~~~v--v~~~~~~~------ 326 (936)
..+.+.+... .... .+|.. ..+.+++.+-|.|++.++. +++|.++......- -+...++.
T Consensus 228 -~i~~I~~~~s------~~a~~~~~~~~-~~V~~~s~f~~s~~isGla~lg~qLv~L~f~~~~~~~e~~s~~~~~r~~~~ 299 (846)
T KOG2066|consen 228 -KICSIKKRSS------SEARSFRLPSL-KKVEIVSHFETSFYISGLAPLGDQLVVLGFDKDISEGEFTSARPSSRAKGN 299 (846)
T ss_pred -EEEEEecccc------cccccccCCcc-ceeeeEEEeeeeeeeeccccccceeEEEeeecccccccccccchhhhccCC
Confidence 1111110100 0000 11211 1356888899999998775 68888887766421 11111110
Q ss_pred ---------CCC---CcccceeE----------EEee-cCCCeEEEEeCCcEEEEEcccc-hhhHHHHHHchhhHHHHHH
Q 002318 327 ---------TSD---SISRGIIG----------LCSD-ATAGVFYAYDQNSIFQVSVNDE-GRDMWKVYLDMKEYAAALA 382 (936)
Q Consensus 327 ---------~~~---~~~~~~~g----------l~~D-~~~~~~~i~S~~~i~~~~~~~e-~~~~W~~ll~~~~f~~Al~ 382 (936)
+.. ++.-.++| +.-+ ...++|||+||++|+++++++. ||..| ++++++|++||+
T Consensus 300 ~peir~~~~~~~Ei~~Dal~~~~~e~~~~~DY~L~~~~~~~~~yyIvspkDiV~a~~~~~~Dhi~W--ll~~k~yeeAl~ 377 (846)
T KOG2066|consen 300 RPEIRIVSLNNDEICSDALIVRGFEELSINDYHLGGHPKTEPLYYIVSPKDIVVAKERDQEDHIDW--LLEKKKYEEALD 377 (846)
T ss_pred CceEEeccccchhhhhhhhhhcchhhcCCccccccCCCCCCceEEEecCCceEEEeecCcchhHHH--HHHhhHHHHHHH
Confidence 000 00001111 1111 3568999999999999998886 99999 999999999999
Q ss_pred hcCC----h--hhHHHHHHHHHHHHHhcCCHHHHHHHHHHhc--CCCChHHHHHHhcCcChHHHHHHHHHHHhhccc---
Q 002318 383 NCRD----P--LQRDQVYLVQAEAAFATKDFHRAASFYAKIN--YILSFEEITLKFISVSEQDALRTFLLRKLDNLA--- 451 (936)
Q Consensus 383 ~~~~----~--~~~~~I~~~~~~~L~~~g~y~~Aa~~y~~~~--~~~~~E~v~lkFl~~~~~~~L~~YL~~~l~~l~--- 451 (936)
+++. . .....|+..|.+||+..|+|++||..+.+.. ....||.++.+|.+.+++..+.+|||+.-++|+
T Consensus 378 ~~k~~~~~~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~gn~~~eWe~~V~~f~e~~~l~~Ia~~lPt~~~rL~p~v 457 (846)
T KOG2066|consen 378 AAKASIGNEERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLGNNAAEWELWVFKFAELDQLTDIAPYLPTGPPRLKPLV 457 (846)
T ss_pred HHHhccCCccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhcchHHHHHHHHHHhccccccchhhccCCCCCcccCchH
Confidence 9873 1 2478999999999999999999999988765 347999999999999999999999998755444
Q ss_pred ----------CchhHHHHHHHHHHHHHHHHH--HhhhhcccchhhccchHHHHHHHHHHHHHHhcccccCCHHHHHHHHH
Q 002318 452 ----------KDDKCQITMISTWATELYLDK--INRLLLEDDTALENRSSEYQSIMREFRAFLSDCKDVLDEATTMKLLE 519 (936)
Q Consensus 452 ----------~~~~~~~~lL~~Wl~ely~~~--l~~~~~e~~~~~~~~~~~~~~~~~~l~~fl~~~~~~ld~~tv~~ll~ 519 (936)
.+...+..++..|+..+|... +++. ..++++ . ..++ .+.+
T Consensus 458 YemvLve~L~~~~~~F~e~i~~Wp~~Lys~l~iisa~------------------~~q~~q---~-----Se~~--~L~e 509 (846)
T KOG2066|consen 458 YEMVLVEFLASDVKGFLELIKEWPGHLYSVLTIISAT------------------EPQIKQ---N-----SEST--ALLE 509 (846)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCChhhhhhhHHHhhc------------------chHHHh---h-----ccch--hHHH
Confidence 456778889999999999754 2222 122222 0 0011 1222
Q ss_pred HcCChhHHHHHHHhhhhHHHHHHHHHhcccHHHHHHHHhCCCCc--hhhH---------HhhHHHHHhHChHHHHHHHHc
Q 002318 520 SYGRVEELVFFASLKEQHEIVVHHYIQQGEAKKALQMLRKPAVP--IDLQ---------YKFAPDLIMLDAYETVESWMT 588 (936)
Q Consensus 520 ~~g~~e~~l~~a~~~~dy~~ll~~yi~~~~~~~AL~~L~~~~d~--~~li---------~k~~~~Ll~~~p~~ti~ll~~ 588 (936)
. ++.+|..+++|.+|++++.+..+. .+++ .+-...||..+.+++++++++
T Consensus 510 ~-------------------La~LYl~d~~Y~~Al~~ylklk~~~vf~lI~k~nL~d~i~~~Iv~Lmll~skka~~lLld 570 (846)
T KOG2066|consen 510 V-------------------LAHLYLYDNKYEKALPIYLKLQDKDVFDLIKKHNLFDQIKDQIVLLMLLDSKKAIDLLLD 570 (846)
T ss_pred H-------------------HHHHHHHccChHHHHHHHHhccChHHHHHHHHHhhHHHHHHHHHHHHccchhhHHHHHhh
Confidence 2 677888999999999988887642 2333 333455777888899999998
Q ss_pred cC-CCCCCcchhHhhhcCCCCCCCCChHHHHHHHHHHHhhcCCCCHhHHHHHHHHhhcCCChHHHHHHHHHhhCCCCCCC
Q 002318 589 TN-NLNPRKLIPAMMRYSSEPHAKNETHEVIKYLEFCVHRLHNEDPGVHNLLLSLYAKQEDDSALLRFLQCKFGKGRENG 667 (936)
Q Consensus 589 ~~-~ld~~~li~~L~~~~~~~~~~~~~~~~~~YLe~li~~~~~~~~~~hn~ll~Ly~~~~~~~~Ll~fL~~~~~~~~~~~ 667 (936)
+. .++|..+++++... +.++..||..++.++......+|+.+++|||+++ +.+|++||+++
T Consensus 571 n~d~ip~a~Vveql~~~---------P~~l~~YL~kl~~rd~~~~~~y~dk~I~LYAEyD-rk~LLPFLr~s-------- 632 (846)
T KOG2066|consen 571 NRDSISPSEVVEQLEDN---------PKLLYCYLHKLFKRDHFMGSEYHDKQIELYAEYD-RKKLLPFLRKS-------- 632 (846)
T ss_pred ccccCCHHHHHHHHhcC---------hHHHHHHHHHHhhcCccccchhhhHHHHHHHHHh-HhhhhHHHHhc--------
Confidence 86 89999999999853 4689999999999988778899999999999998 89999999998
Q ss_pred CcccCChHHHHHHHHhcCcceeeehhhhccccHHHHHHHHHh--cCHHHHHHHhhccCCCHHHHHHHHHHHHHHHhhccc
Q 002318 668 PEFFYDPKYALRLCLKEKRMRACVHIYGMMSMHEEAVALALQ--VDPELAMAEADKVEDDEDLRKKLWLMVAKHVIEQEK 745 (936)
Q Consensus 668 ~~~~yd~~~aLrlc~~~~~~~~~v~L~~~~g~~~eAl~l~l~--~di~lA~~~a~~~~~d~~~~kkLWl~ll~~~i~~~~ 745 (936)
.+|++++|+++|.+.+++++.||||+|||++.+||.++++ .|+++|++|| +.++|++ ||..++.+++++|+
T Consensus 633 --~~Y~lekA~eiC~q~~~~~E~VYlLgrmGn~k~AL~lII~el~die~AIefv-Keq~D~e----LWe~LI~~~ldkPe 705 (846)
T KOG2066|consen 633 --QNYNLEKALEICSQKNFYEELVYLLGRMGNAKEALKLIINELRDIEKAIEFV-KEQDDSE----LWEDLINYSLDKPE 705 (846)
T ss_pred --CCCCHHHHHHHHHhhCcHHHHHHHHHhhcchHHHHHHHHHHhhCHHHHHHHH-HhcCCHH----HHHHHHHHhhcCcH
Confidence 7999999999999999999999999999999999999999 9999999999 6677887 99999999999984
Q ss_pred CCChHhHHHHHHHHHhcCCccccccccCcCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 002318 746 GTKRENIRKAIAFLKETDGLLKIEDILPFFPDFALIDDFKEAICSSLDDYNKQIEQLKQEMNDATHGADNIRNDISALAQ 825 (936)
Q Consensus 746 ~~~~~~i~~~l~~L~~~~~~L~i~diL~~~p~~~~I~~~Kd~I~~~L~~y~~~i~~l~~~m~~~~~~~~~i~~~i~~~~~ 825 (936)
.++.+++++..-+|++ |+..+|+++.|+++||.|.++|++|+.|.+..+..-+.....+..+..++.+.++
T Consensus 706 -----~~~~ll~i~~~~dpl~----ii~kip~g~~IPnLrdsl~Kil~dy~~q~el~~~c~~i~~nd~~~l~~k~~~~~~ 776 (846)
T KOG2066|consen 706 -----FIKALLNIGEHEDPLL----IIRKIPDGLEIPNLRDSLVKILQDYNLQLELRQGCYDILKNDSKSLLNKFLKTAR 776 (846)
T ss_pred -----HHHHHHHhhhcccHHH----HHhcCCCCCCCccHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5666666555556665 4555999999999999999999999999987765555444557778888889999
Q ss_pred ccEeecccccccccchhhhhcccccccccccCCCCCCCCEEEEcCCChhHHHhHHHHHhhc
Q 002318 826 RYAVIDRDEDCGVCRRKILVAGRDYRMARGYASVGPMAPFYVFPCGHAFHAQCLIAHVTQC 886 (936)
Q Consensus 826 r~~~i~~~~~C~~C~k~L~~~~~~~~~~~~~~~~~~~~~fvvFpCgH~fH~~CL~~~~~~~ 886 (936)
|++.+.-.++|+.|.++...++.. ...++||.|||.||..|+..+....
T Consensus 777 ~Gv~v~~e~rc~~c~~~~l~~~~~------------~~~~~v~~c~h~yhk~c~~~~~~~~ 825 (846)
T KOG2066|consen 777 RGVLVSVEERCSSCFEPNLPSGAA------------FDSVVVFHCGHMYHKECLMMESLRN 825 (846)
T ss_pred cCeeEeehhhhhhhcccccccCcc------------cceeeEEEccchhhhcccccHHHhc
Confidence 999999899999999999874321 1379999999999999999887665
No 3
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1e-48 Score=443.07 Aligned_cols=764 Identities=16% Similarity=0.219 Sum_probs=485.4
Q ss_pred ceeEEEEeCCEEEEEecCCeEEEEeCCCCCceeeEcCCCCCCccceeEEEeCCCCCeEEEEeecCCC-------------
Q 002318 23 VITCMSAGNDVIVLGTSKGWLIRHDFGAGDSYDIDLSAGRPGEQSIHKVFVDPGGSHCIATIVGSGG------------- 89 (936)
Q Consensus 23 ~i~~l~v~~n~l~l~~~~g~l~ridl~~~~~~~~~l~~~~~~~~~i~~i~lDp~G~hlli~~~~~~~------------- 89 (936)
+|+|..-+...+++|+..|.|..++-.-.....++... .+.|..+|++..-. .++|..-.+.
T Consensus 27 ~isc~~s~~~~vvigt~~G~V~~Ln~s~~~~~~fqa~~----~siv~~L~~~~~~~-~L~sv~Ed~~~np~llkiw~lek 101 (933)
T KOG2114|consen 27 AISCCSSSTGSVVIGTADGRVVILNSSFQLIRGFQAYE----QSIVQFLYILNKQN-FLFSVGEDEQGNPVLLKIWDLEK 101 (933)
T ss_pred ceeEEcCCCceEEEeeccccEEEecccceeeehheecc----hhhhhHhhcccCce-EEEEEeecCCCCceEEEEecccc
Confidence 89999999999999999999999876222223444431 12356666653322 3333220001
Q ss_pred ------ccEEEEecCCCCceeccCCCCceEEEEEecCCCCCCCCcceEEEEcCCCcEEEEEEecCCcccceeeEEeeeCC
Q 002318 90 ------AETFYTHAKWSKPRVLSKLKGLVVNAVAWNRQQITEASTKEIILGTDTGQLHEMAVDEKDKREKYIKLLFELNE 163 (936)
Q Consensus 90 ------g~~~Y~~~~~~k~k~L~klkg~~I~sVaw~~~~~~~~st~~iLiGt~~G~i~e~~i~~~~~~~~~~k~v~~l~~ 163 (936)
..++|.|+-.+-.-+. --.++.+++... +-..|++|=.+|.|+-+.=+ -..|+..|+-|..++
T Consensus 102 ~~~n~sP~c~~~~ri~~~~np~---~~~p~s~l~Vs~------~l~~Iv~Gf~nG~V~~~~GD--i~RDrgsr~~~~~~~ 170 (933)
T KOG2114|consen 102 VDKNNSPQCLYEHRIFTIKNPT---NPSPASSLAVSE------DLKTIVCGFTNGLVICYKGD--ILRDRGSRQDYSHRG 170 (933)
T ss_pred cCCCCCcceeeeeeeeccCCCC---CCCcceEEEEEc------cccEEEEEecCcEEEEEcCc--chhccccceeeeccC
Confidence 2223333322211110 124677777762 24589999999988866322 134677788888876
Q ss_pred CCCceeeEEEEeeccCCCceEEEEEECCC--eEEEEecCCchHHHHhhhhcccccccccCCCcCCCcceeeeccCCCceE
Q 002318 164 LPEAFMGLQMETASLSNGTRYYVMAVTPT--RLYSFTGFGSLDTVFASYLDRAVHFMELPGEILNSELHFFIKQRRAVHF 241 (936)
Q Consensus 164 ~~~~I~gi~~~~~~~~~~~~~~i~ast~~--rly~f~~~~~l~~~f~~~~~~~~~~~el~~~~~~s~~~~~~~~~~~~~f 241 (936)
. +||||+.+..- ...++||+|+. .+|-..|.++...+-+ +.. + .+..+...+....|
T Consensus 171 ~-~pITgL~~~~d-----~~s~lFv~Tt~~V~~y~l~gr~p~~~~ld---~~G-----~-------~lnCss~~~~t~qf 229 (933)
T KOG2114|consen 171 K-EPITGLALRSD-----GKSVLFVATTEQVMLYSLSGRTPSLKVLD---NNG-----I-------SLNCSSFSDGTYQF 229 (933)
T ss_pred C-CCceeeEEecC-----CceeEEEEecceeEEEEecCCCcceeeec---cCC-----c-------cceeeecCCCCccE
Confidence 4 79999999842 23335555555 5665555432111100 000 0 01111111111234
Q ss_pred EEeecCceEEEEeccCCCCCCCCCCCccccccccccccccCCCCCCCCccccccCCceEEEEEC-CEEEEEecCCCcEEE
Q 002318 242 AWLSGAGIYHGGLNFGAQRSSPNGDENFVENKALLSYSKLSEGAEAVKPGSMAVSEYHFLLLMG-NKVKVVNRISEQIIE 320 (936)
Q Consensus 242 aW~t~~gi~~g~i~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~p~si~lT~fHillL~~-~~l~ivn~l~~~vv~ 320 (936)
.-..+.++|+..-+-. ..++ .+.+-.=|.++.++ +.+.+|..-.+-...
T Consensus 230 Ica~~e~l~fY~sd~~--------~~cf----------------------af~~g~kk~~~~~~~g~~L~v~~~~~~~~~ 279 (933)
T KOG2114|consen 230 ICAGSEFLYFYDSDGR--------GPCF----------------------AFEVGEKKEMLVFSFGLLLCVTTDKGTENT 279 (933)
T ss_pred EEecCceEEEEcCCCc--------ceee----------------------eecCCCeEEEEEEecCEEEEEEccCCCCCc
Confidence 4444444554221110 0011 11111112222222 222222222211110
Q ss_pred EEEecC-----CCCCcccceeE---E---Eeec---CCCeEEEEeCCcEEEEEcccchhhHHHHHHchhhHHHHHHhcCC
Q 002318 321 ELQFDQ-----TSDSISRGIIG---L---CSDA---TAGVFYAYDQNSIFQVSVNDEGRDMWKVYLDMKEYAAALANCRD 386 (936)
Q Consensus 321 ~~~~~~-----~~~~~~~~~~g---l---~~D~---~~~~~~i~S~~~i~~~~~~~e~~~~W~~ll~~~~f~~Al~~~~~ 386 (936)
..+... +...-..+..+ + ..|. .+..++++|.+++..-.++.....+..++++|++|+.|+.+|+.
T Consensus 280 s~s~ss~~~i~~~~d~~n~~v~ys~vl~~l~d~l~~w~~~~~vltsdg~~~~L~ek~le~kL~iL~kK~ly~~Ai~LAk~ 359 (933)
T KOG2114|consen 280 SLSNSSSNRIFKAYDLRNRYVLYSSVLEDLSDNLIEWSFDCLVLTSDGVVHELIEKDLETKLDILFKKNLYKVAINLAKS 359 (933)
T ss_pred ccCccchhheeehhhhcCcccchHHhHHHHHHHHHhcCCcEEEEecCCceeeeeeccHHHHHHHHHHhhhHHHHHHHHHh
Confidence 000000 00000000000 0 0010 12367777777766666666667778889999999999999984
Q ss_pred ----hhhHHHHHHHHHHHHHhcCCHHHHHHHHHHhcCCCChHHHHHHhcCcChHHHHHHHHHHHhhcccCchhHHHHHHH
Q 002318 387 ----PLQRDQVYLVQAEAAFATKDFHRAASFYAKINYILSFEEITLKFISVSEQDALRTFLLRKLDNLAKDDKCQITMIS 462 (936)
Q Consensus 387 ----~~~~~~I~~~~~~~L~~~g~y~~Aa~~y~~~~~~~~~E~v~lkFl~~~~~~~L~~YL~~~l~~l~~~~~~~~~lL~ 462 (936)
+..+..|+++||+|||.+|+|++|+.+|.++.+..+..+|+.+|++++.+..|+.||+..... .-+.+.++++|.
T Consensus 360 ~~~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~le~s~Vi~kfLdaq~IknLt~YLe~L~~~-gla~~dhttlLL 438 (933)
T KOG2114|consen 360 QHLDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGFLEPSEVIKKFLDAQRIKNLTSYLEALHKK-GLANSDHTTLLL 438 (933)
T ss_pred cCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHcccCChHHHHHHhcCHHHHHHHHHHHHHHHHc-ccccchhHHHHH
Confidence 568999999999999999999999999999998789999999999999999999999985443 223334556653
Q ss_pred HHHHHHHHHHHhhhhcccchhhccchHHHHHHHHHHHHHHhcccc---cCCHHHHHHHHHHcCChhHHHHHHHhhhhHHH
Q 002318 463 TWATELYLDKINRLLLEDDTALENRSSEYQSIMREFRAFLSDCKD---VLDEATTMKLLESYGRVEELVFFASLKEQHEI 539 (936)
Q Consensus 463 ~Wl~ely~~~l~~~~~e~~~~~~~~~~~~~~~~~~l~~fl~~~~~---~ld~~tv~~ll~~~g~~e~~l~~a~~~~dy~~ 539 (936)
.+|. ++.+ .+++.+|++.... .+|.+++.++|+..|+.+++.++|+..+.++.
T Consensus 439 ----ncYi-Klkd-------------------~~kL~efI~~~~~g~~~fd~e~al~Ilr~snyl~~a~~LA~k~~~he~ 494 (933)
T KOG2114|consen 439 ----NCYI-KLKD-------------------VEKLTEFISKCDKGEWFFDVETALEILRKSNYLDEAELLATKFKKHEW 494 (933)
T ss_pred ----HHHH-Hhcc-------------------hHHHHHHHhcCCCcceeeeHHHHHHHHHHhChHHHHHHHHHHhccCHH
Confidence 3342 2222 3577888875321 46999999999999999999999999999999
Q ss_pred HHHHHHh-cccHHHHHHHHhCCCC--chhhHHhhHHHHHhHChHHHHHHHHccC--C-----------C-CCCcchhHhh
Q 002318 540 VVHHYIQ-QGEAKKALQMLRKPAV--PIDLQYKFAPDLIMLDAYETVESWMTTN--N-----------L-NPRKLIPAMM 602 (936)
Q Consensus 540 ll~~yi~-~~~~~~AL~~L~~~~d--~~~li~k~~~~Ll~~~p~~ti~ll~~~~--~-----------l-d~~~li~~L~ 602 (936)
++...++ .++|++||+++.+++- ....+.+|+.+||.++|++|+.++++.- . + ++.+.++.++
T Consensus 495 vl~ille~~~ny~eAl~yi~slp~~e~l~~l~kyGk~Ll~h~P~~t~~ili~~~t~~~~~~~~~~~s~~~~~~~~i~if~ 574 (933)
T KOG2114|consen 495 VLDILLEDLHNYEEALRYISSLPISELLRTLNKYGKILLEHDPEETMKILIELITELNSQGKGKSLSNIPDSIEFIGIFS 574 (933)
T ss_pred HHHHHHHHhcCHHHHHHHHhcCCHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHhhcCCCCCCchhhcCccchhheeeec
Confidence 9988776 5889999999999973 3457789999999999999999998651 0 1 1222222222
Q ss_pred hcCCCCCCCCChHHHHHHHHHHHhhcCCCCH--hHHHHHHHHhh----------------------cC----CChH-H--
Q 002318 603 RYSSEPHAKNETHEVIKYLEFCVHRLHNEDP--GVHNLLLSLYA----------------------KQ----EDDS-A-- 651 (936)
Q Consensus 603 ~~~~~~~~~~~~~~~~~YLe~li~~~~~~~~--~~hn~ll~Ly~----------------------~~----~~~~-~-- 651 (936)
. .......||+.+....+.... .+..+..+++. ++ .|++ +
T Consensus 575 ~---------~~~~~~~Fl~~~~E~s~~s~e~~~i~~t~~~~~l~~~sf~~~~~~~n~~~~l~h~~~~~~~~sdpq~kt~ 645 (933)
T KOG2114|consen 575 Q---------NYQILLNFLESMSEISPDSEEVLEIIYTLLELSLMQKSFVTKPFEFNLEAELAHYQQYEGFDSDPQVKTT 645 (933)
T ss_pred c---------CHHHHHHHHHHHHhcCCCchhhhccccchhhhhhhhccccccchhhccHHHHHHHHhhcccccChhhhhc
Confidence 1 223445555543322111100 11111111111 00 0000 0
Q ss_pred -----HHH-----------HHHHhhCCCCCCCCcccCChHHHHHHHHhcCcceeeehhhhccccHHHHHHHHHh-cCHHH
Q 002318 652 -----LLR-----------FLQCKFGKGRENGPEFFYDPKYALRLCLKEKRMRACVHIYGMMSMHEEAVALALQ-VDPEL 714 (936)
Q Consensus 652 -----Ll~-----------fL~~~~~~~~~~~~~~~yd~~~aLrlc~~~~~~~~~v~L~~~~g~~~eAl~l~l~-~di~l 714 (936)
.+. ++..+ ++. .+....+||.+.||-+|+..++.++..|+|.+++.+.+-+..... .|+|.
T Consensus 646 ~~~~l~~~~~~~~~~~~~~~l~ks-n~l-~d~~~~nvd~d~al~l~qm~df~dg~ly~~~k~k~~~dl~~~~~q~~d~E~ 723 (933)
T KOG2114|consen 646 TLYDLYLELDAEDVPERTIILRKS-NKL-LDYAASNVDEDAALLLSQMSDFTDGLLYSYEKLKEGQDLMLYFQQISDPET 723 (933)
T ss_pred cchhhHHHHHhhhcccccchhhhh-cch-hhhhhccccchHHHHHHHHhCCCchHHHHHhhccchHHHHHHHHHhhChHH
Confidence 001 11111 111 112235799999999999999999999999999999999998888 89999
Q ss_pred HHHHhhccCC-CHHHHHHHHHHHHHHHhhcccC-CChHhHHHHHHHHHhcC--CccccccccCcCCCCcchhHHHHHHHH
Q 002318 715 AMAEADKVED-DEDLRKKLWLMVAKHVIEQEKG-TKRENIRKAIAFLKETD--GLLKIEDILPFFPDFALIDDFKEAICS 790 (936)
Q Consensus 715 A~~~a~~~~~-d~~~~kkLWl~ll~~~i~~~~~-~~~~~i~~~l~~L~~~~--~~L~i~diL~~~p~~~~I~~~Kd~I~~ 790 (936)
++..|+...+ |+ +||..+++|.++...- ...+.+.++++.+.... |.+.+-++|. -+...++..+||+|.+
T Consensus 724 ~it~~~~~g~~~p----~l~~~~L~yF~~~~~i~~~~~~v~~vl~~I~~~~~ippl~VL~~La-kn~~ltls~IkD~ii~ 798 (933)
T KOG2114|consen 724 VITLCERLGKEDP----SLWLHALKYFVSEESIEDCYEIVYKVLEAIEMQERIPPLHVLQILA-KNGTLTLSVIKDYIIK 798 (933)
T ss_pred HHHHHHHhCccCh----HHHHHHHHHHhhhcchhhHHHHHHHHHHHHHhcccCCHHHHHHHHh-cCCceEEehhHHHHHH
Confidence 9999976642 34 4999999999987521 11346677777665543 4444444554 2446789999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccEeecccccccccchhhhhcccccccccccCCCCCCCCEEEEcC
Q 002318 791 SLDDYNKQIEQLKQEMNDATHGADNIRNDISALAQRYAVIDRDEDCGVCRRKILVAGRDYRMARGYASVGPMAPFYVFPC 870 (936)
Q Consensus 791 ~L~~y~~~i~~l~~~m~~~~~~~~~i~~~i~~~~~r~~~i~~~~~C~~C~k~L~~~~~~~~~~~~~~~~~~~~~fvvFpC 870 (936)
.|+.|+.+|++.+..++.+.+..+++++++..++.+..++ +.++|+.|+-+|.. |+|+|.|
T Consensus 799 ~l~~~~~~I~qd~~~Ie~yk~~i~e~r~~l~~lr~sa~i~-q~skCs~C~~~Ldl------------------P~VhF~C 859 (933)
T KOG2114|consen 799 WLNKYSTIIEQDEDAIEVYKKDIEEKRQELETLRTSAQIF-QVSKCSACEGTLDL------------------PFVHFLC 859 (933)
T ss_pred HHHhhhHHHHhhHHHHHHHHHHHHHHHHHHHHhhccccee-eeeeecccCCcccc------------------ceeeeec
Confidence 9999999999999999999999999999999999986554 57999999999998 9999999
Q ss_pred CChhHHHhHHH--HHhhcCCc---------------cchHHHHHHHhhhccCCccccccc
Q 002318 871 GHAFHAQCLIA--HVTQCTNE---------------TQVSVVDIVLSYKRLQSGWNTVAS 913 (936)
Q Consensus 871 gH~fH~~CL~~--~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~ 913 (936)
||+||++|+.+ ..+|-|-+ ....+.+|+.+++...|||+|||-
T Consensus 860 gHsyHqhC~e~~~~~CP~C~~e~~~~m~l~~s~~q~~~~~~~~f~~~~e~s~D~fsvite 919 (933)
T KOG2114|consen 860 GHSYHQHCLEDKEDKCPKCLPELRGVMDLKRSQEQKKTDDFDEFFHQSEGSKDSFSVITE 919 (933)
T ss_pred ccHHHHHhhccCcccCCccchhhhhhHHHHHHHHHhhhhHHHHHHHhhcccCCcceeehh
Confidence 99999999992 12222221 123477899999988899999874
No 4
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=7.4e-34 Score=335.65 Aligned_cols=531 Identities=18% Similarity=0.279 Sum_probs=377.2
Q ss_pred CccccccCCceEEEEECCEEEEEecCCCcEEEEE-EecCCCCCcccceeEEEeecCCCeEEEEeCCcEEEEEcccchhhH
Q 002318 289 KPGSMAVSEYHFLLLMGNKVKVVNRISEQIIEEL-QFDQTSDSISRGIIGLCSDATAGVFYAYDQNSIFQVSVNDEGRDM 367 (936)
Q Consensus 289 ~p~si~lT~fHillL~~~~l~ivn~l~~~vv~~~-~~~~~~~~~~~~~~gl~~D~~~~~~~i~S~~~i~~~~~~~e~~~~ 367 (936)
.|.+++.+.++++.+.+..+.|.+..+++.|++. .+ +....++. ...+++|+.+-.++|.+.+....+..
T Consensus 243 ~P~~v~~~~PYlIa~~~~~veI~s~~~~qlvQSI~~~--------~~~~~l~s-~~~~i~~~~~~s~v~~L~p~~~~~~q 313 (877)
T KOG2063|consen 243 VPLSVVVESPYLIALLDRSVEIRSKLDGQLVQSITPL--------SNGRSLLS-AHNGIIFVASLSNVWILVPVSNFEKQ 313 (877)
T ss_pred cchhhcccCceEEEEccccEEEEeccCHHHhhccccc--------cccceeee-cCCcEEEEEeccceEEEEeccchHHH
Confidence 5999999999999999999999999999999887 44 23344443 34589999999999999987755666
Q ss_pred HHHHHchhhHHHHHHhcCC-----hhhH---HHHHHHH-HHHHHhcCCHHHHHHHHHHhcCCCChHHHHHHhcCc--Ch-
Q 002318 368 WKVYLDMKEYAAALANCRD-----PLQR---DQVYLVQ-AEAAFATKDFHRAASFYAKINYILSFEEITLKFISV--SE- 435 (936)
Q Consensus 368 W~~ll~~~~f~~Al~~~~~-----~~~~---~~I~~~~-~~~L~~~g~y~~Aa~~y~~~~~~~~~E~v~lkFl~~--~~- 435 (936)
-..|+..+.|++|+.+++. |... ..+...+ |-.+|.+|+|++|++.|.++. ...-.|+..|.+. ..
T Consensus 314 i~~lL~~k~fe~ai~L~e~~~~~~p~~~~~i~~~~~l~~a~~lf~q~~f~ea~~~F~~~~--~d~~~vi~lfP~l~p~~~ 391 (877)
T KOG2063|consen 314 IQDLLQEKSFEEAISLAEILDSPNPKEKRQISCIKILIDAFELFLQKQFEEAMSLFEKSE--IDPRHVISLFPDLLPSEN 391 (877)
T ss_pred HHHHHHhhhHHHHHHHHhccCCCChHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhc--cChHHHHHhchhhcCCcc
Confidence 6678888899999999872 3333 3445555 777999999999999999987 5556777777531 00
Q ss_pred --------HH----------------HHHHHHHHHhhcccCchhHHHHHHHHHHHHHHHHH-HhhhhcccchhhccchHH
Q 002318 436 --------QD----------------ALRTFLLRKLDNLAKDDKCQITMISTWATELYLDK-INRLLLEDDTALENRSSE 490 (936)
Q Consensus 436 --------~~----------------~L~~YL~~~l~~l~~~~~~~~~lL~~Wl~ely~~~-l~~~~~e~~~~~~~~~~~ 490 (936)
.+ ++..|+........+.... ..|+ |.+. .+.. . .+...+.
T Consensus 392 ~~~~~~~~vp~~~~~~~~~~~v~a~l~~~~ylt~~r~~~~~~l~~-~~m~-------~~~~~~~~~-----~-s~~~~~~ 457 (877)
T KOG2063|consen 392 SSIEFTGVVPIRAPELRGGDLVPAVLALIVYLTQSRREENKKLNK-YKML-------YMNYFKNTL-----I-SELLKSD 457 (877)
T ss_pred cccceeeeccCchhhhccCcccchhhhhhhHhHHHHHHHHHHHHH-hhhh-------HHhhhhccC-----c-chhhccc
Confidence 11 2333333211100000000 0000 0000 0000 0 0000000
Q ss_pred HHHHHHHH-HHHHhcccccCCHHHHHHHHHH---cCChhHHHHHHHhhhhHHHHHHHHHhcccHHHHHHHHhCCCC----
Q 002318 491 YQSIMREF-RAFLSDCKDVLDEATTMKLLES---YGRVEELVFFASLKEQHEIVVHHYIQQGEAKKALQMLRKPAV---- 562 (936)
Q Consensus 491 ~~~~~~~l-~~fl~~~~~~ld~~tv~~ll~~---~g~~e~~l~~a~~~~dy~~ll~~yi~~~~~~~AL~~L~~~~d---- 562 (936)
...+...+ ..+++.|.. .|+..+..+++. |...+++-..-+..+.|..++.+|-..|+|++||++|.++.+
T Consensus 458 ~~~~~~~IDttLlk~Yl~-~n~~~v~~llrlen~~c~vee~e~~L~k~~~y~~Li~LY~~kg~h~~AL~ll~~l~d~~~~ 536 (877)
T KOG2063|consen 458 LNDILELIDTTLLKCYLE-TNPGLVGPLLRLENNHCDVEEIETVLKKSKKYRELIELYATKGMHEKALQLLRDLVDEDSD 536 (877)
T ss_pred hHHHHHHHHHHHHHHHHh-cCchhhhhhhhccCCCcchHHHHHHHHhcccHHHHHHHHHhccchHHHHHHHHHHhccccc
Confidence 11111111 111222211 133344444432 334455555555555566666666666666666666554321
Q ss_pred ----------------------chhhHHhhHHHHHhHChHHHHHHHHcc-----CCCCCCcchhHhhhcCCCCCCCCChH
Q 002318 563 ----------------------PIDLQYKFAPDLIMLDAYETVESWMTT-----NNLNPRKLIPAMMRYSSEPHAKNETH 615 (936)
Q Consensus 563 ----------------------~~~li~k~~~~Ll~~~p~~ti~ll~~~-----~~ld~~~li~~L~~~~~~~~~~~~~~ 615 (936)
..+++.+|+.|++..+|+.++++|+.. +.+++++++..|... .+.
T Consensus 537 ~d~~~~~~~e~ii~YL~~l~~~~~~Li~~y~~wvl~~~p~~gi~Ift~~~~~~~~sis~~~Vl~~l~~~--------~~~ 608 (877)
T KOG2063|consen 537 TDSFQLDGLEKIIEYLKKLGAENLDLILEYADWVLNKNPEAGIQIFTSEDKQEAESISRDDVLNYLKSK--------EPK 608 (877)
T ss_pred cccchhhhHHHHHHHHHHhcccchhHHHHHhhhhhccCchhheeeeeccChhhhccCCHHHHHHHhhhh--------Ccc
Confidence 248999999999999999999999872 489999999888764 346
Q ss_pred HHHHHHHHHHhhcCCCCHhHHHHHHHHhhcCC---------------C--hHHHHHHHHHhhCCCCCCCCcccCChHHHH
Q 002318 616 EVIKYLEFCVHRLHNEDPGVHNLLLSLYAKQE---------------D--DSALLRFLQCKFGKGRENGPEFFYDPKYAL 678 (936)
Q Consensus 616 ~~~~YLe~li~~~~~~~~~~hn~ll~Ly~~~~---------------~--~~~Ll~fL~~~~~~~~~~~~~~~yd~~~aL 678 (936)
.+++|||+++..+...++.+|+.|+.||++.- . +++|..||+.+ ..||++..|
T Consensus 609 l~I~YLE~li~~~~~~~~~lht~ll~ly~e~v~~~~~~~~kg~e~~E~~~rekl~~~l~~s----------~~Y~p~~~L 678 (877)
T KOG2063|consen 609 LLIPYLEHLISDNRLTSTLLHTVLLKLYLEKVLEQASTDGKGEEAPETTVREKLLDFLESS----------DLYDPQLLL 678 (877)
T ss_pred hhHHHHHHHhHhccccchHHHHHHHHHHHHHHhhccCchhccccchhhhHHHHHHHHhhhh----------cccCcchhh
Confidence 79999999999998889999999999998721 1 57899999988 689999988
Q ss_pred HHHHhcCcceeeehhhhccccHHHHHHHHHh--cCHHHHHHHhhccCCCHHHHHHHHHHHHHHHhhcccCCChHhHHHHH
Q 002318 679 RLCLKEKRMRACVHIYGMMSMHEEAVALALQ--VDPELAMAEADKVEDDEDLRKKLWLMVAKHVIEQEKGTKRENIRKAI 756 (936)
Q Consensus 679 rlc~~~~~~~~~v~L~~~~g~~~eAl~l~l~--~di~lA~~~a~~~~~d~~~~kkLWl~ll~~~i~~~~~~~~~~i~~~l 756 (936)
.-....+++++++.+++|||+|++||+++++ +|++.|..||....++.+.+++.++.+++.++...... +..-..++
T Consensus 679 ~~~~~~~l~ee~aill~rl~khe~aL~Iyv~~L~d~~~A~~Yc~~~y~~~~~~~~~y~~lL~~~l~~~~d~-~~~~~~il 757 (877)
T KOG2063|consen 679 ERLNGDELYEERAILLGRLGKHEEALHIYVHELDDIDAAESYCLPQYESDKTNKEIYLTLLRIYLNPIHDY-KSGPLYIL 757 (877)
T ss_pred hhccchhHHHHHHHHHhhhhhHHHHHHHHHHHhcchhHHHHHHHHhccCCCcccHHHHHHHHHHhcchhhc-cccchhhh
Confidence 8888889999999999999999999999999 99999999997765544557789999999888762111 12345667
Q ss_pred HHHHhcCCccccccccCcCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHhcccEeecccc
Q 002318 757 AFLKETDGLLKIEDILPFFPDFALIDDFKEAICSSLDDYNKQIEQLKQEMNDATHGADNIR--NDISALAQRYAVIDRDE 834 (936)
Q Consensus 757 ~~L~~~~~~L~i~diL~~~p~~~~I~~~Kd~I~~~L~~y~~~i~~l~~~m~~~~~~~~~i~--~~i~~~~~r~~~i~~~~ 834 (936)
+||+.....++...+++.+|+.+.+.++.+.+.+.|+....+.... +|..+...++.+. .++.+.++..+++....
T Consensus 758 ~~l~~h~~r~d~~~~~~~Lp~~~sl~~~~~~l~~~Lr~~~~~~r~~--q~~~~l~q~E~~~~~~~l~~~~s~~~~l~~~~ 835 (877)
T KOG2063|consen 758 NFLQKHADRLDLAQVLKLLPDDISLKDLCSFLSKLLRKRFEALRTT--QVQKSLLQAELLPSTEELNKLRSSKIQLNDES 835 (877)
T ss_pred hHHHhhhhhcCHHHHHHhCCccCcHhHHHHHHHHHHHHHHHhcchh--HHHHHHHHHhhcchHHHHHHhhcceEEEchhh
Confidence 7888877789999999999999999999999999999876655443 3555555566654 55677888899999999
Q ss_pred cccccchhhhhcccccccccccCCCCCCCCEEEEcCCChhHHHhHHHHH
Q 002318 835 DCGVCRRKILVAGRDYRMARGYASVGPMAPFYVFPCGHAFHAQCLIAHV 883 (936)
Q Consensus 835 ~C~~C~k~L~~~~~~~~~~~~~~~~~~~~~fvvFpCgH~fH~~CL~~~~ 883 (936)
.|.+|.+++.. . .|++||-|+..|..|..+.-
T Consensus 836 ~C~~C~k~i~~-----s------------~f~ryp~g~lvh~~C~~~~q 867 (877)
T KOG2063|consen 836 LCSICEKRIGT-----S------------VFVRYPNGILVHLSCAKDLQ 867 (877)
T ss_pred HhHHHHhhhcC-----e------------eEEECCCCcEEEEEeechhc
Confidence 99999999998 5 89999999999999997653
No 5
>PF05131 Pep3_Vps18: Pep3/Vps18/deep orange family; InterPro: IPR007810 This region is found in a number of proteins identified as being involved in Golgi function and vacuolar sorting. The molecular function of this region is unknown. Proteins containing this domain also contain a C-terminal ring finger domain.
Probab=99.97 E-value=1.6e-30 Score=250.21 Aligned_cols=146 Identities=43% Similarity=0.821 Sum_probs=130.8
Q ss_pred ceEEEEeccCCCCCCCCCCCccccccccccccccCCCCCCCCccccccCCceEEEEECCEEEEEecCCCcEEEEEEecCC
Q 002318 248 GIYHGGLNFGAQRSSPNGDENFVENKALLSYSKLSEGAEAVKPGSMAVSEYHFLLLMGNKVKVVNRISEQIIEELQFDQT 327 (936)
Q Consensus 248 gi~~g~i~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~p~si~lT~fHillL~~~~l~ivn~l~~~vv~~~~~~~~ 327 (936)
|||+|+++..++.+ +.++.+..+++++.++... ..|+|+++|+||+++|++++|+|+|++|+++|+++.+.
T Consensus 1 GI~~G~l~~~~~~~-----~~v~~~~~~l~~~~~~~~~--~~p~si~lT~~H~llL~~~~l~~vn~L~~~vV~e~~~~-- 71 (147)
T PF05131_consen 1 GIYHGNLNFGSQNS-----ENVLSNAKLLPYSELPNSS--SPPLSIALTEFHLLLLYSDRLIAVNRLNNKVVFEESLL-- 71 (147)
T ss_pred CeEEEeecCCCCcc-----cccccchhhcccccCCCCC--CCcceEEeeceeeeEEeCCEEEEEEecCCcEEEEEEec--
Confidence 89999999864422 3445566678888877643 35999999999999999999999999999999999983
Q ss_pred CCCcccceeEEEeecCCCeEEEEeCCcEEEEEcccchhhHHHHHHchhhHHHHHHhcCC-hhhHHHHHHHHHHHHHhc
Q 002318 328 SDSISRGIIGLCSDATAGVFYAYDQNSIFQVSVNDEGRDMWKVYLDMKEYAAALANCRD-PLQRDQVYLVQAEAAFAT 404 (936)
Q Consensus 328 ~~~~~~~~~gl~~D~~~~~~~i~S~~~i~~~~~~~e~~~~W~~ll~~~~f~~Al~~~~~-~~~~~~I~~~~~~~L~~~ 404 (936)
.+.|+++||++|+.+++||+||++.||++.+++|+|++|++||++|+|++|+++|++ +.+|+.|+.++|++||++
T Consensus 72 --~~~~~~~gl~~D~~~~t~W~ys~~~I~ei~i~~E~r~vWk~yl~~~~fd~Al~~~~~~~~~~d~V~~~qa~~lf~k 147 (147)
T PF05131_consen 72 --ETGGKILGLCRDPSSNTFWLYSSNSIFEIVINNEDRDVWKIYLDKGDFDEALQYCKTNPAQRDQVLIKQADHLFQK 147 (147)
T ss_pred --cCCcceeeEEEcCCCCeEEEEeCCeeEEEEcCcchHHHHHHHHhcCcHHHHHHHccCCHHHHHHHHHHHHHHHhhC
Confidence 236899999999999999999999999999999999999999999999999999998 999999999999999975
No 6
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=99.66 E-value=4.1e-16 Score=152.05 Aligned_cols=130 Identities=22% Similarity=0.342 Sum_probs=115.5
Q ss_pred CCCCCcchhHhhhcCCCCCCCCChHHHHHHHHHHHhhcCCCCHhHHHHHHHHhhcCCChHHHHHHHH-HhhCCCCCCCCc
Q 002318 591 NLNPRKLIPAMMRYSSEPHAKNETHEVIKYLEFCVHRLHNEDPGVHNLLLSLYAKQEDDSALLRFLQ-CKFGKGRENGPE 669 (936)
Q Consensus 591 ~ld~~~li~~L~~~~~~~~~~~~~~~~~~YLe~li~~~~~~~~~~hn~ll~Ly~~~~~~~~Ll~fL~-~~~~~~~~~~~~ 669 (936)
.++++++|+.+.... .+++++.||++++..+ ..++.+||+|+++|++++ +.++++||+ ++
T Consensus 7 ~~~~~~vv~~~~~~~-------~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~~~-~~~ll~~l~~~~---------- 67 (140)
T smart00299 7 PIDVSEVVELFEKRN-------LLEELIPYLESALKLN-SENPALQTKLIELYAKYD-PQKEIERLDNKS---------- 67 (140)
T ss_pred cCCHHHHHHHHHhCC-------cHHHHHHHHHHHHccC-ccchhHHHHHHHHHHHHC-HHHHHHHHHhcc----------
Confidence 678899999998643 3678999999999886 478899999999999987 789999999 54
Q ss_pred ccCChHHHHHHHHhcCcceeeehhhhccccHHHHHHHHHh--cCHHHHHHHhhccCCCHHHHHHHHHHHHHHHhhcc
Q 002318 670 FFYDPKYALRLCLKEKRMRACVHIYGMMSMHEEAVALALQ--VDPELAMAEADKVEDDEDLRKKLWLMVAKHVIEQE 744 (936)
Q Consensus 670 ~~yd~~~aLrlc~~~~~~~~~v~L~~~~g~~~eAl~l~l~--~di~lA~~~a~~~~~d~~~~kkLWl~ll~~~i~~~ 744 (936)
.+||+++|+++|.++++++++++||+++|+|++||+++++ +|++.|+++|.+.. +++ +|..+++++++.+
T Consensus 68 ~~yd~~~~~~~c~~~~l~~~~~~l~~k~~~~~~Al~~~l~~~~d~~~a~~~~~~~~-~~~----lw~~~~~~~l~~~ 139 (140)
T smart00299 68 NHYDIEKVGKLCEKAKLYEEAVELYKKDGNFKDAIVTLIEHLGNYEKAIEYFVKQN-NPE----LWAEVLKALLDKP 139 (140)
T ss_pred ccCCHHHHHHHHHHcCcHHHHHHHHHhhcCHHHHHHHHHHcccCHHHHHHHHHhCC-CHH----HHHHHHHHHHccC
Confidence 6899999999999999999999999999999999999998 69999999996643 555 9999999998764
No 7
>PF10367 Vps39_2: Vacuolar sorting protein 39 domain 2; InterPro: IPR019453 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised In Vps39 this domain is involved in localisation and in mediating the interactions with Vps11 [].
Probab=99.65 E-value=2.2e-16 Score=146.89 Aligned_cols=107 Identities=28% Similarity=0.532 Sum_probs=92.5
Q ss_pred HHHHhcCCccccccccCcCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccEeecccccc
Q 002318 757 AFLKETDGLLKIEDILPFFPDFALIDDFKEAICSSLDDYNKQIEQLKQEMNDATHGADNIRNDISALAQRYAVIDRDEDC 836 (936)
Q Consensus 757 ~~L~~~~~~L~i~diL~~~p~~~~I~~~Kd~I~~~L~~y~~~i~~l~~~m~~~~~~~~~i~~~i~~~~~r~~~i~~~~~C 836 (936)
++|++..+.+++.++|+++|++++|++++++|+++|+++..+....+.+..........++.++...+++++.|++++.|
T Consensus 2 ~lL~~~~~~ld~~~vL~~LP~~~~l~~l~~fl~~~l~~~~~~~~~~~i~~~l~~~~~~~~~~~l~~~~~~~v~i~~~~~C 81 (109)
T PF10367_consen 2 ELLNEHGSRLDPIDVLKLLPDDWPLSDLSDFLCKSLRKYSNRKRESQIEKNLLKSENLQLKYELVKLRSRSVVITESTKC 81 (109)
T ss_pred hhHHhccccCCHHHHHHhCcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhcCceEEECCCCCc
Confidence 57777667899999999999999999999999999999998887766444433334555667888899999999999999
Q ss_pred cccchhhhhcccccccccccCCCCCCCCEEEEcCCChhHHHhHH
Q 002318 837 GVCRRKILVAGRDYRMARGYASVGPMAPFYVFPCGHAFHAQCLI 880 (936)
Q Consensus 837 ~~C~k~L~~~~~~~~~~~~~~~~~~~~~fvvFpCgH~fH~~CL~ 880 (936)
++|+++|.+ . .|++|||||.||..|..
T Consensus 82 ~vC~k~l~~-----~------------~f~~~p~~~v~H~~C~~ 108 (109)
T PF10367_consen 82 SVCGKPLGN-----S------------VFVVFPCGHVVHYSCIK 108 (109)
T ss_pred cCcCCcCCC-----c------------eEEEeCCCeEEeccccc
Confidence 999999998 5 99999999999999974
No 8
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=99.38 E-value=3.1e-14 Score=139.31 Aligned_cols=134 Identities=33% Similarity=0.508 Sum_probs=113.3
Q ss_pred CCCCCCcchhHhhhcCCCCCCCCChHHHHHHHHHHHhhcCCCCHhHHHHHHHHhhcCCChHHHHHHHHHhhCCCCCCCCc
Q 002318 590 NNLNPRKLIPAMMRYSSEPHAKNETHEVIKYLEFCVHRLHNEDPGVHNLLLSLYAKQEDDSALLRFLQCKFGKGRENGPE 669 (936)
Q Consensus 590 ~~ld~~~li~~L~~~~~~~~~~~~~~~~~~YLe~li~~~~~~~~~~hn~ll~Ly~~~~~~~~Ll~fL~~~~~~~~~~~~~ 669 (936)
...++..+|..+.+.. ....+++||+.++.+....++.+|+.|+.+|++.++.++|++||+++
T Consensus 6 ~~~~~~~vi~~~~~~~-------~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~---------- 68 (143)
T PF00637_consen 6 DPLEISEVISAFEERN-------QPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTS---------- 68 (143)
T ss_dssp TTSCSCCCHHHCTTTT--------GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSS----------
T ss_pred CccCHHHHHHHHHhCC-------CHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcccc----------
Confidence 3678888998887632 34678899999998777778999999999999998448999999977
Q ss_pred ccCChHHHHHHHHhcCcceeeehhhhccccHHHHHHHHHh-cCHHHHHHHhhccCCCHHHHHHHHHHHHHHHhhccc
Q 002318 670 FFYDPKYALRLCLKEKRMRACVHIYGMMSMHEEAVALALQ-VDPELAMAEADKVEDDEDLRKKLWLMVAKHVIEQEK 745 (936)
Q Consensus 670 ~~yd~~~aLrlc~~~~~~~~~v~L~~~~g~~~eAl~l~l~-~di~lA~~~a~~~~~d~~~~kkLWl~ll~~~i~~~~ 745 (936)
..||++.|+++|.++++++++++||+++|+|++|++++.. +|++.|.++|.+.. |++ +|..+++++++.++
T Consensus 69 ~~yd~~~~~~~c~~~~l~~~a~~Ly~~~~~~~~al~i~~~~~~~~~a~e~~~~~~-~~~----l~~~l~~~~l~~~~ 140 (143)
T PF00637_consen 69 NNYDLDKALRLCEKHGLYEEAVYLYSKLGNHDEALEILHKLKDYEEAIEYAKKVD-DPE----LWEQLLKYCLDSKP 140 (143)
T ss_dssp SSS-CTHHHHHHHTTTSHHHHHHHHHCCTTHTTCSSTSSSTHCSCCCTTTGGGCS-SSH----HHHHHHHHHCTSTC
T ss_pred cccCHHHHHHHHHhcchHHHHHHHHHHcccHHHHHHHHHHHccHHHHHHHHHhcC-cHH----HHHHHHHHHHhcCc
Confidence 5799999999999999999999999999999999998444 78999999996665 444 99999999998753
No 9
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.78 E-value=2.1e-07 Score=110.70 Aligned_cols=328 Identities=16% Similarity=0.170 Sum_probs=183.9
Q ss_pred CChhHHHHHHHhhhhHHHHHHHHHhcccHHHHHHHHhCCCCc----hhhHH-------------hhHHHHHh---HChHH
Q 002318 522 GRVEELVFFASLKEQHEIVVHHYIQQGEAKKALQMLRKPAVP----IDLQY-------------KFAPDLIM---LDAYE 581 (936)
Q Consensus 522 g~~e~~l~~a~~~~dy~~ll~~yi~~~~~~~AL~~L~~~~d~----~~li~-------------k~~~~Ll~---~~p~~ 581 (936)
-..++-+.-|+..+.|..+..+|.+.++|+.||+.+.+.++. .+.++ ++...+++ ..-..
T Consensus 789 ~~de~~il~a~~~~~y~Vl~hi~~k~~kyed~l~~iLe~n~ek~~~~~fvs~e~e~l~~~~~~fr~l~~i~e~fti~~~~ 868 (1206)
T KOG2079|consen 789 RTDENFILEAKEKNFYKVLFHIYKKENKYEDALSLILETNDEKEYNTDFVSIEDEILKKCPPGFRELGKITEVFTIFDLL 868 (1206)
T ss_pred cChHHHHHHhhhcccceeHHHHHhhhhhHHHHHHHHHHhhhhhccccceEeeehhhhccCCcchHHHHHHHhhccchHHH
Confidence 444556777888888889999999999999999988765420 00111 11111111 11223
Q ss_pred HHHHHHccCCCCCCcchhHhhhcCCCCCCCCChHHHHHHHHHHHhhcC---CCCHhHHHHHHHHhhc-CCChHHHHHH--
Q 002318 582 TVESWMTTNNLNPRKLIPAMMRYSSEPHAKNETHEVIKYLEFCVHRLH---NEDPGVHNLLLSLYAK-QEDDSALLRF-- 655 (936)
Q Consensus 582 ti~ll~~~~~ld~~~li~~L~~~~~~~~~~~~~~~~~~YLe~li~~~~---~~~~~~hn~ll~Ly~~-~~~~~~Ll~f-- 655 (936)
+.++++.+. ..++..+................-+||..+++... ..|..+.+..+++||+ ...++.++.|
T Consensus 869 ~~rlli~hc----~d~fa~~~~n~~re~l~v~l~l~~k~l~Klfs~~si~neLd~~l~el~~E~~ckwm~sre~Il~f~~ 944 (1206)
T KOG2079|consen 869 LSRLLIEHC----VDIFADFDYNLHREILEVKLELTQKYLDKLFSTPSINNELDKRLRELHIELNCKWMSSREMILWFNG 944 (1206)
T ss_pred HHHHHHHHH----HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCcchhHHHHHHHHHHHHHHHhccccchhHHHHHHH
Confidence 333333321 00011000000000000012334478888877654 3467889999999999 4435557777
Q ss_pred -HHHhhCCCCCCCCcccCChHHHHHHHHhcC--cceeeehhhhccccHHHHHHHHHh-----cC--------HHHHHHHh
Q 002318 656 -LQCKFGKGRENGPEFFYDPKYALRLCLKEK--RMRACVHIYGMMSMHEEAVALALQ-----VD--------PELAMAEA 719 (936)
Q Consensus 656 -L~~~~~~~~~~~~~~~yd~~~aLrlc~~~~--~~~~~v~L~~~~g~~~eAl~l~l~-----~d--------i~lA~~~a 719 (936)
+... ..+ .+.|.++..+- ..+..++++.....+.+|..+... .+ .++.+.++
T Consensus 945 ~v~~n----------ag~--~~~l~ll~~~s~h~~r~vI~e~l~~~~~a~af~l~feel~~nk~~~ni~s~~~~~tms~~ 1012 (1206)
T KOG2079|consen 945 TVLSN----------AGS--LQILDLLNQDSNHEARAVIHERLESFNLAVAFLLSFEELCLNKGKTNISSLLESLTMSFD 1012 (1206)
T ss_pred HHHhc----------cch--HHHHHHHhcChHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHh
Confidence 3333 223 56777776653 344556666667777777776654 11 34445555
Q ss_pred hccC-CCH--HHHHHHHHHHHHHHhhcccCCChHhHHHH-----HHHHHhcCCccccccccCcCCCC--cchhHHHHHHH
Q 002318 720 DKVE-DDE--DLRKKLWLMVAKHVIEQEKGTKRENIRKA-----IAFLKETDGLLKIEDILPFFPDF--ALIDDFKEAIC 789 (936)
Q Consensus 720 ~~~~-~d~--~~~kkLWl~ll~~~i~~~~~~~~~~i~~~-----l~~L~~~~~~L~i~diL~~~p~~--~~I~~~Kd~I~ 789 (936)
+... +++ ..-.+||..+++++..-++..+ ..+.+. ++++... ...-+..+|. -|++ ++++|+|+.|.
T Consensus 1013 d~~ss~t~ts~r~erl~~~l~t~v~~fee~~e-~~~~ksl~~~~lqlv~t~-~~~~~~~lLe-~~~nv~~tf~D~kqlLl 1089 (1206)
T KOG2079|consen 1013 DCNSSGTETSSRWERLITFLITLVGKFEEHDE-DLCNKSLQEAFLQLVRTK-SSSQMSSLLE-HQDNVLMTFQDLKQLLL 1089 (1206)
T ss_pred hhhccCCccHHHHHHHHHHHHHHhccchhhhH-HHHHHHHHHHHHHHHHhc-cHHHHHHHHc-CCccceeehhhHHHHHH
Confidence 4332 121 1223467777766665443321 122222 2333221 1111333443 3443 68999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-ccEeecccccccccchhhhhcccccccccccCCCCCCCCEEEE
Q 002318 790 SSLDDYNKQIEQLKQEMNDATHGADNIRNDISALAQ-RYAVIDRDEDCGVCRRKILVAGRDYRMARGYASVGPMAPFYVF 868 (936)
Q Consensus 790 ~~L~~y~~~i~~l~~~m~~~~~~~~~i~~~i~~~~~-r~~~i~~~~~C~~C~k~L~~~~~~~~~~~~~~~~~~~~~fvvF 868 (936)
.+++.|..+-+..+........+...+..+.+.... |++.+. ...|..|+++++. +. .-.+|
T Consensus 1090 ~~~~s~~~e~el~~~s~kii~~~~l~l~~~~r~~~shr~~~ih-t~~c~~c~q~~~~-h~---------------~~~~F 1152 (1206)
T KOG2079|consen 1090 NVFNSYKLERELSELSQKIIEDSSLDLVQQYRKFLSHRGWSIH-TDDCEICGQKIWA-HL---------------DPLLF 1152 (1206)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHhhccCceec-CcchHhhhhhhhc-cC---------------cchhe
Confidence 999999888776554444333455556666665444 777774 7899999999984 32 44566
Q ss_pred c-CCChhHHHhHHHHHhh
Q 002318 869 P-CGHAFHAQCLIAHVTQ 885 (936)
Q Consensus 869 p-CgH~fH~~CL~~~~~~ 885 (936)
. |||.-|..|..+.-.+
T Consensus 1153 l~wgh~qh~qc~~~~d~~ 1170 (1206)
T KOG2079|consen 1153 LAWGHVQHHQCMISVDLK 1170 (1206)
T ss_pred eeccchhhHHHHHHHhhc
Confidence 5 9999999888776543
No 10
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.55 E-value=3.6e-06 Score=99.34 Aligned_cols=221 Identities=17% Similarity=0.262 Sum_probs=153.3
Q ss_pred HHHHhcccccCCHHHHHHHHHH------------cCChhHHHHHHHhhhhHHHHHHHHHhcccHHHHHHHHhCCCCchhh
Q 002318 499 RAFLSDCKDVLDEATTMKLLES------------YGRVEELVFFASLKEQHEIVVHHYIQQGEAKKALQMLRKPAVPIDL 566 (936)
Q Consensus 499 ~~fl~~~~~~ld~~tv~~ll~~------------~g~~e~~l~~a~~~~dy~~ll~~yi~~~~~~~AL~~L~~~~d~~~l 566 (936)
+.||+.+. ..|..+|=..|+. -++..+++..+..+.-|.....|.+.+.+.+-.-++|...+.
T Consensus 890 E~fLkeN~-yYDs~vVGkYCEKRDP~lA~vaYerGqcD~elI~vcNeNSlfK~~aRYlv~R~D~~LW~~VL~e~n~---- 964 (1666)
T KOG0985|consen 890 ERFLKENP-YYDSKVVGKYCEKRDPHLACVAYERGQCDLELINVCNENSLFKSQARYLVERSDPDLWAKVLNEENP---- 964 (1666)
T ss_pred HHhcccCC-cchhhHHhhhhcccCCceEEEeecccCCcHHHHHhcCchhHHHHHHHHHHhccChHHHHHHHhccCh----
Confidence 45666532 2355555555554 355677888888788888888888887775555555544321
Q ss_pred HHhhHHHHHhHChHHHHHHHHccCCCCCCcc---hhHhhhcCCCCCCCCChHHHHHHHHHHHhhcCC--CCHhHHHHHHH
Q 002318 567 QYKFAPDLIMLDAYETVESWMTTNNLNPRKL---IPAMMRYSSEPHAKNETHEVIKYLEFCVHRLHN--EDPGVHNLLLS 641 (936)
Q Consensus 567 i~k~~~~Ll~~~p~~ti~ll~~~~~ld~~~l---i~~L~~~~~~~~~~~~~~~~~~YLe~li~~~~~--~~~~~hn~ll~ 641 (936)
|-..|+. +.|+.-+. ..-||+.+ +.+++.-+ -+++.+..||.++-++.. ....+.|+|+-
T Consensus 965 ---~rRqLiD----qVv~tal~-E~~dPe~vS~tVkAfMtad-------Lp~eLIELLEKIvL~~S~Fse~~nLQnLLiL 1029 (1666)
T KOG0985|consen 965 ---YRRQLID----QVVQTALP-ETQDPEEVSVTVKAFMTAD-------LPNELIELLEKIVLDNSVFSENRNLQNLLIL 1029 (1666)
T ss_pred ---HHHHHHH----HHHHhcCC-ccCChHHHHHHHHHHHhcC-------CcHHHHHHHHHHhcCCcccccchhhhhhHHH
Confidence 1123321 11211111 14455543 45555532 467899999999876543 34567888774
Q ss_pred HhhcCCChHHHHHHHHHhhCCCCCCCCcccCChHHHHHHHHhcCcceeeehhhhccccHHHHHHHHHh--cCHHHHHHHh
Q 002318 642 LYAKQEDDSALLRFLQCKFGKGRENGPEFFYDPKYALRLCLKEKRMRACVHIYGMMSMHEEAVALALQ--VDPELAMAEA 719 (936)
Q Consensus 642 Ly~~~~~~~~Ll~fL~~~~~~~~~~~~~~~yd~~~aLrlc~~~~~~~~~v~L~~~~g~~~eAl~l~l~--~di~lA~~~a 719 (936)
--++. |+.++++|+.+- .+||.+.+-.+|.+++++++..-||.+-.++..|+.++++ ++++.|-+||
T Consensus 1030 tAika-d~trVm~YI~rL----------dnyDa~~ia~iai~~~LyEEAF~ifkkf~~n~~A~~VLie~i~~ldRA~efA 1098 (1666)
T KOG0985|consen 1030 TAIKA-DRTRVMEYINRL----------DNYDAPDIAEIAIENQLYEEAFAIFKKFDMNVSAIQVLIENIGSLDRAYEFA 1098 (1666)
T ss_pred HHhhc-ChHHHHHHHHHh----------ccCCchhHHHHHhhhhHHHHHHHHHHHhcccHHHHHHHHHHhhhHHHHHHHH
Confidence 44444 489999999998 7899999999999999999999999999999999999999 7899999999
Q ss_pred hccCCCHHHHHHHHHHHHHHHhhcccCCChHhHHHHHH-HHHh
Q 002318 720 DKVEDDEDLRKKLWLMVAKHVIEQEKGTKRENIRKAIA-FLKE 761 (936)
Q Consensus 720 ~~~~~d~~~~kkLWl~ll~~~i~~~~~~~~~~i~~~l~-~L~~ 761 (936)
++.+. ++ +|.++++.-++. ..++.+++ +|+.
T Consensus 1099 e~~n~-p~----vWsqlakAQL~~------~~v~dAieSyika 1130 (1666)
T KOG0985|consen 1099 ERCNE-PA----VWSQLAKAQLQG------GLVKDAIESYIKA 1130 (1666)
T ss_pred HhhCC-hH----HHHHHHHHHHhc------CchHHHHHHHHhc
Confidence 88764 44 999999988876 34555554 4443
No 11
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.33 E-value=0.0004 Score=82.69 Aligned_cols=372 Identities=13% Similarity=0.122 Sum_probs=225.6
Q ss_pred HHHHHHchhhHHHHHHhcCC-----hh---------------------hHHHHHHHHHHHHHhcCCHHHHHHHHHHhcCC
Q 002318 367 MWKVYLDMKEYAAALANCRD-----PL---------------------QRDQVYLVQAEAAFATKDFHRAASFYAKINYI 420 (936)
Q Consensus 367 ~W~~ll~~~~f~~Al~~~~~-----~~---------------------~~~~I~~~~~~~L~~~g~y~~Aa~~y~~~~~~ 420 (936)
+-.+-++.+.||+|..+-+. .+ .-..|-.+-|..-+++|...+|++.|.+..+.
T Consensus 1054 ia~iai~~~LyEEAF~ifkkf~~n~~A~~VLie~i~~ldRA~efAe~~n~p~vWsqlakAQL~~~~v~dAieSyikadDp 1133 (1666)
T KOG0985|consen 1054 IAEIAIENQLYEEAFAIFKKFDMNVSAIQVLIENIGSLDRAYEFAERCNEPAVWSQLAKAQLQGGLVKDAIESYIKADDP 1133 (1666)
T ss_pred HHHHHhhhhHHHHHHHHHHHhcccHHHHHHHHHHhhhHHHHHHHHHhhCChHHHHHHHHHHHhcCchHHHHHHHHhcCCc
Confidence 34567777788888777542 00 11367777788888999999999999999877
Q ss_pred CChHHHHHHhcCcChHHHHHHHHHHHhhcccCchhHHHHHHHHHHHHHHHHHHhhhhcccchhhccchHHHHHHHHHHHH
Q 002318 421 LSFEEITLKFISVSEQDALRTFLLRKLDNLAKDDKCQITMISTWATELYLDKINRLLLEDDTALENRSSEYQSIMREFRA 500 (936)
Q Consensus 421 ~~~E~v~lkFl~~~~~~~L~~YL~~~l~~l~~~~~~~~~lL~~Wl~ely~~~l~~~~~e~~~~~~~~~~~~~~~~~~l~~ 500 (936)
..+.+|+..=-+.+..+.|..||.-.-...+.. ..-..++.. | .+.+++ .+++.
T Consensus 1134 s~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~-~id~eLi~A-----y-Akt~rl-------------------~elE~ 1187 (1666)
T KOG0985|consen 1134 SNYLEVIDVASRTGKYEDLVKYLLMARKKVREP-YIDSELIFA-----Y-AKTNRL-------------------TELEE 1187 (1666)
T ss_pred HHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCc-cchHHHHHH-----H-HHhchH-------------------HHHHH
Confidence 789999999888999999999998644433321 111122211 1 233332 45667
Q ss_pred HHhcccccCCHHHHHHHHHHcCChhHHHHHHHhhhhHHHHHHHHHhcccHHHHHHHHhCCCCchhhHHhhHHHHHhHChH
Q 002318 501 FLSDCKDVLDEATTMKLLESYGRVEELVFFASLKEQHEIVVHHYIQQGEAKKALQMLRKPAVPIDLQYKFAPDLIMLDAY 580 (936)
Q Consensus 501 fl~~~~~~ld~~tv~~ll~~~g~~e~~l~~a~~~~dy~~ll~~yi~~~~~~~AL~~L~~~~d~~~li~k~~~~Ll~~~p~ 580 (936)
|+..... -+...|=+-|-..|.++.+--+..-..+|..+..-....|+|..|.+.-++-+. ...+.+-...-++...-
T Consensus 1188 fi~gpN~-A~i~~vGdrcf~~~~y~aAkl~y~~vSN~a~La~TLV~LgeyQ~AVD~aRKAns-~ktWK~VcfaCvd~~EF 1265 (1666)
T KOG0985|consen 1188 FIAGPNV-ANIQQVGDRCFEEKMYEAAKLLYSNVSNFAKLASTLVYLGEYQGAVDAARKANS-TKTWKEVCFACVDKEEF 1265 (1666)
T ss_pred HhcCCCc-hhHHHHhHHHhhhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhccc-hhHHHHHHHHHhchhhh
Confidence 7764321 233344445555666666666666677888899888999999999998877654 23333322222211111
Q ss_pred HHHHHHHccCCCCCCcchhHhhhcCCCCCCCCChHHHHHHHHHHHhhcCCCCHhHHHHHHHHhhcCCChHHHHHHHHHhh
Q 002318 581 ETVESWMTTNNLNPRKLIPAMMRYSSEPHAKNETHEVIKYLEFCVHRLHNEDPGVHNLLLSLYAKQEDDSALLRFLQCKF 660 (936)
Q Consensus 581 ~ti~ll~~~~~ld~~~li~~L~~~~~~~~~~~~~~~~~~YLe~li~~~~~~~~~~hn~ll~Ly~~~~~~~~Ll~fL~~~~ 660 (936)
+.-++.=-+--+-.+. ++.|..|.+..+ .-++.+..||.-+.- ...-......|..||+++. ++++++-|+-.-
T Consensus 1266 rlAQiCGL~iivhade-Leeli~~Yq~rG---yFeElIsl~Ea~LGL-ERAHMgmfTELaiLYskyk-p~km~EHl~LFw 1339 (1666)
T KOG0985|consen 1266 RLAQICGLNIIVHADE-LEELIEYYQDRG---YFEELISLLEAGLGL-ERAHMGMFTELAILYSKYK-PEKMMEHLKLFW 1339 (1666)
T ss_pred hHHHhcCceEEEehHh-HHHHHHHHHhcC---cHHHHHHHHHhhhch-hHHHHHHHHHHHHHHHhcC-HHHHHHHHHHHH
Confidence 1111110000011122 344444432211 122344444432210 0112356667778999998 689999888762
Q ss_pred CCCCCCCCcccCChHHHHHHHHhcCcceeeehhhhccccHHHHHHHHHhcC-----HHHHHHHhhccCCCHHHHHHHHHH
Q 002318 661 GKGRENGPEFFYDPKYALRLCLKEKRMRACVHIYGMMSMHEEAVALALQVD-----PELAMAEADKVEDDEDLRKKLWLM 735 (936)
Q Consensus 661 ~~~~~~~~~~~yd~~~aLrlc~~~~~~~~~v~L~~~~g~~~eAl~l~l~~d-----i~lA~~~a~~~~~d~~~~kkLWl~ 735 (936)
...++.+++|-|.+..++.+.||||.+-..|+.|.-.++++- -..-+++..+.. +-+ |+-+
T Consensus 1340 ---------sRvNipKviRA~eqahlW~ElvfLY~~y~eyDNAa~tmm~h~teaw~~~~FKdii~kVa-NvE----lyYk 1405 (1666)
T KOG0985|consen 1340 ---------SRVNIPKVIRAAEQAHLWSELVFLYDKYEEYDNAALTMMEHPTEAWDHGQFKDIITKVA-NVE----LYYK 1405 (1666)
T ss_pred ---------HhcchHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHhCChhhhhhhhHHHHHHHHh-hHH----HHHH
Confidence 467899999999999999999999999999999998888742 222334443433 334 7777
Q ss_pred HHHHHhhcccCCChHhHHHHHHHHHhcCCccccccccCcCCCCcchhHHHHHHHHHHH
Q 002318 736 VAKHVIEQEKGTKRENIRKAIAFLKETDGLLKIEDILPFFPDFALIDDFKEAICSSLD 793 (936)
Q Consensus 736 ll~~~i~~~~~~~~~~i~~~l~~L~~~~~~L~i~diL~~~p~~~~I~~~Kd~I~~~L~ 793 (936)
.+...++... ..+..++..| .|.|.......+|...-.++-+|.++.....
T Consensus 1406 Ai~FYl~~~P----~llnDlL~vL---~pRlDh~r~v~~f~K~~~lpLikpyl~~vq~ 1456 (1666)
T KOG0985|consen 1406 AIQFYLDFHP----LLLNDLLTVL---SPRLDHTRTVSIFSKAGQLPLIKPYLRAVQS 1456 (1666)
T ss_pred HHHHHHHhCh----HHHHHHHHhc---ccccCchHHHHHHHhcCCCcccHHHHHHHHh
Confidence 7777776421 2344545444 4566666666666655556666666655443
No 12
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.19 E-value=0.00019 Score=83.68 Aligned_cols=253 Identities=19% Similarity=0.175 Sum_probs=158.4
Q ss_pred HHHHchhhHHHHHHhcCC--hhhHHHHHHHHHHHHHhcCCHHHHHHHHHHhcCCCChHHHHHHhcCcChHHHHHHHHHHH
Q 002318 369 KVYLDMKEYAAALANCRD--PLQRDQVYLVQAEAAFATKDFHRAASFYAKINYILSFEEITLKFISVSEQDALRTFLLRK 446 (936)
Q Consensus 369 ~~ll~~~~f~~Al~~~~~--~~~~~~I~~~~~~~L~~~g~y~~Aa~~y~~~~~~~~~E~v~lkFl~~~~~~~L~~YL~~~ 446 (936)
|+|-..|++++|+++|+. ..++..-+..||.+|-..+|...|.++|.++. .+--+|.+++.+ ...++..|+.++
T Consensus 834 KlyQs~g~w~eA~eiAE~~DRiHLr~Tyy~yA~~Lear~Di~~AleyyEK~~--~hafev~rmL~e--~p~~~e~Yv~~~ 909 (1416)
T KOG3617|consen 834 KLYQSQGMWSEAFEIAETKDRIHLRNTYYNYAKYLEARRDIEAALEYYEKAG--VHAFEVFRMLKE--YPKQIEQYVRRK 909 (1416)
T ss_pred HHHHhcccHHHHHHHHhhccceehhhhHHHHHHHHHhhccHHHHHHHHHhcC--ChHHHHHHHHHh--ChHHHHHHHHhc
Confidence 445556888888888774 45778889999999999999999999999997 333356666542 244555566542
Q ss_pred hhcccCchhHHHHHHHHHHHHHHHHHHhhhhcccchhhccchHHHHHHHHHHHHHHhcccccCCHHHHHHHHHHcCChhH
Q 002318 447 LDNLAKDDKCQITMISTWATELYLDKINRLLLEDDTALENRSSEYQSIMREFRAFLSDCKDVLDEATTMKLLESYGRVEE 526 (936)
Q Consensus 447 l~~l~~~~~~~~~lL~~Wl~ely~~~l~~~~~e~~~~~~~~~~~~~~~~~~l~~fl~~~~~~ld~~tv~~ll~~~g~~e~ 526 (936)
-+ + ++.++|- +.|++.|..+.
T Consensus 910 ~d------~---~L~~WWg--------------------------------------------------qYlES~Gemda 930 (1416)
T KOG3617|consen 910 RD------E---SLYSWWG--------------------------------------------------QYLESVGEMDA 930 (1416)
T ss_pred cc------h---HHHHHHH--------------------------------------------------HHHhcccchHH
Confidence 21 1 4555551 36788899999
Q ss_pred HHHHHHhhhhHHHHHHHHHhcccHHHHHHHHhCCCCchhhHHhhHHHHH-hHChHHHHHHHHccCCCCCCcchhHhhhcC
Q 002318 527 LVFFASLKEQHEIVVHHYIQQGEAKKALQMLRKPAVPIDLQYKFAPDLI-MLDAYETVESWMTTNNLNPRKLIPAMMRYS 605 (936)
Q Consensus 527 ~l~~a~~~~dy~~ll~~yi~~~~~~~AL~~L~~~~d~~~li~k~~~~Ll-~~~p~~ti~ll~~~~~ld~~~li~~L~~~~ 605 (936)
++.|....+||-.++.+...+|+.++|-++-....| ....|..+...- .-+-.++|.++.+. .+|.+
T Consensus 931 Al~~Y~~A~D~fs~VrI~C~qGk~~kAa~iA~esgd-~AAcYhlaR~YEn~g~v~~Av~FfTrA---------qafsn-- 998 (1416)
T KOG3617|consen 931 ALSFYSSAKDYFSMVRIKCIQGKTDKAARIAEESGD-KAACYHLARMYENDGDVVKAVKFFTRA---------QAFSN-- 998 (1416)
T ss_pred HHHHHHHhhhhhhheeeEeeccCchHHHHHHHhccc-HHHHHHHHHHhhhhHHHHHHHHHHHHH---------HHHHH--
Confidence 999999999999999999999999999998887777 344443332221 00111223333220 01110
Q ss_pred CCCCCCCChHHHHHHHHHHHhhcCCCCHhHHHHHHHHhhcCCChHHHHHHHHHhhCCCCCCCCcccCChHHHHHHHHhcC
Q 002318 606 SEPHAKNETHEVIKYLEFCVHRLHNEDPGVHNLLLSLYAKQEDDSALLRFLQCKFGKGRENGPEFFYDPKYALRLCLKEK 685 (936)
Q Consensus 606 ~~~~~~~~~~~~~~YLe~li~~~~~~~~~~hn~ll~Ly~~~~~~~~Ll~fL~~~~~~~~~~~~~~~yd~~~aLrlc~~~~ 685 (936)
+ |.|.-+.+-.++|...--.+ ..-|.-.|.|..++.+
T Consensus 999 -----------A----------------------IRlcKEnd~~d~L~nlal~s----------~~~d~v~aArYyEe~g 1035 (1416)
T KOG3617|consen 999 -----------A----------------------IRLCKENDMKDRLANLALMS----------GGSDLVSAARYYEELG 1035 (1416)
T ss_pred -----------H----------------------HHHHHhcCHHHHHHHHHhhc----------CchhHHHHHHHHHHcc
Confidence 2 22222222123333322222 1236667777777776
Q ss_pred -cceeeehhhhccccHHHHHHHHHh-cCHHHHHHHhh--ccCCCHHHHHHHHHHHHHHHhhc
Q 002318 686 -RMRACVHIYGMMSMHEEAVALALQ-VDPELAMAEAD--KVEDDEDLRKKLWLMVAKHVIEQ 743 (936)
Q Consensus 686 -~~~~~v~L~~~~g~~~eAl~l~l~-~di~lA~~~a~--~~~~d~~~~kkLWl~ll~~~i~~ 743 (936)
...-.|-||-|.|+...||+++.. ...+.-.-++. .+..|++ |...-++++.+.
T Consensus 1036 ~~~~~AVmLYHkAGm~~kALelAF~tqQf~aL~lIa~DLd~~sDp~----ll~RcadFF~~~ 1093 (1416)
T KOG3617|consen 1036 GYAHKAVMLYHKAGMIGKALELAFRTQQFSALDLIAKDLDAGSDPK----LLRRCADFFENN 1093 (1416)
T ss_pred hhhhHHHHHHHhhcchHHHHHHHHhhcccHHHHHHHHhcCCCCCHH----HHHHHHHHHHhH
Confidence 667788899999999999999998 33222112221 1233554 555666666554
No 13
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.98 E-value=0.00015 Score=85.36 Aligned_cols=168 Identities=19% Similarity=0.256 Sum_probs=113.2
Q ss_pred HHHHHhcccHHHHHHHHhCCCCc----hhhHHhhHHHHHh-HChHHHHHHHHcc-CCCCCCcchhHhhhcCCCCCCCCCh
Q 002318 541 VHHYIQQGEAKKALQMLRKPAVP----IDLQYKFAPDLIM-LDAYETVESWMTT-NNLNPRKLIPAMMRYSSEPHAKNET 614 (936)
Q Consensus 541 l~~yi~~~~~~~AL~~L~~~~d~----~~li~k~~~~Ll~-~~p~~ti~ll~~~-~~ld~~~li~~L~~~~~~~~~~~~~ 614 (936)
++..++...|.-|+.+-+++... .++..+|+.-|.. -+-+++++-.++. +.++|..++..++.- ..-
T Consensus 341 L~iL~kK~ly~~Ai~LAk~~~~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~le~s~Vi~kfLda-------q~I 413 (933)
T KOG2114|consen 341 LDILFKKNLYKVAINLAKSQHLDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGFLEPSEVIKKFLDA-------QRI 413 (933)
T ss_pred HHHHHHhhhHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHcccCChHHHHHHhcCH-------HHH
Confidence 33334444455555554444321 2344455555553 2334444444443 356666665544321 112
Q ss_pred HHHHHHHHHHHhhcCCCCHhHHHHHHHHhhcCCChHHHHHHHHHhhCCCCCCCCcccCChHHHHHHHHhcCcceeeehhh
Q 002318 615 HEVIKYLEFCVHRLHNEDPGVHNLLLSLYAKQEDDSALLRFLQCKFGKGRENGPEFFYDPKYALRLCLKEKRMRACVHIY 694 (936)
Q Consensus 615 ~~~~~YLe~li~~~~~~~~~~hn~ll~Ly~~~~~~~~Ll~fL~~~~~~~~~~~~~~~yd~~~aLrlc~~~~~~~~~v~L~ 694 (936)
..+..|||.|... +.....--.+|+..|++..|-++|..|++... +..-.+|++.|+++|++.++.+++-+|=
T Consensus 414 knLt~YLe~L~~~-gla~~dhttlLLncYiKlkd~~kL~efI~~~~------~g~~~fd~e~al~Ilr~snyl~~a~~LA 486 (933)
T KOG2114|consen 414 KNLTSYLEALHKK-GLANSDHTTLLLNCYIKLKDVEKLTEFISKCD------KGEWFFDVETALEILRKSNYLDEAELLA 486 (933)
T ss_pred HHHHHHHHHHHHc-ccccchhHHHHHHHHHHhcchHHHHHHHhcCC------CcceeeeHHHHHHHHHHhChHHHHHHHH
Confidence 4588899999865 33334444567789999888899999999861 1124789999999999999999999999
Q ss_pred hccccHHHHHHHHHh--cCHHHHHHHhhcc
Q 002318 695 GMMSMHEEAVALALQ--VDPELAMAEADKV 722 (936)
Q Consensus 695 ~~~g~~~eAl~l~l~--~di~lA~~~a~~~ 722 (936)
.+-++|+.++++.++ +|++.|..|...-
T Consensus 487 ~k~~~he~vl~ille~~~ny~eAl~yi~sl 516 (933)
T KOG2114|consen 487 TKFKKHEWVLDILLEDLHNYEEALRYISSL 516 (933)
T ss_pred HHhccCHHHHHHHHHHhcCHHHHHHHHhcC
Confidence 999999999999999 8999999998654
No 14
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=97.89 E-value=0.021 Score=60.52 Aligned_cols=151 Identities=12% Similarity=0.127 Sum_probs=99.8
Q ss_pred CCceeEEEEeC--CEEEEEecCCeEEEEeC-CCCCceeeEcCCCCCCccceeEEEeCCCCCeEEEEeecCCCccEEEEec
Q 002318 21 RGVITCMSAGN--DVIVLGTSKGWLIRHDF-GAGDSYDIDLSAGRPGEQSIHKVFVDPGGSHCIATIVGSGGAETFYTHA 97 (936)
Q Consensus 21 ~~~i~~l~v~~--n~l~l~~~~g~l~ridl-~~~~~~~~~l~~~~~~~~~i~~i~lDp~G~hlli~~~~~~~g~~~Y~~~ 97 (936)
++.|+|++.++ +.++.|..+|.+..+|+ .......+..+ ...+..+-..|.|.++++++. +|..+.++.
T Consensus 9 ~~~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~-----~~~i~~~~~~~~~~~l~~~~~---~~~i~i~~~ 80 (289)
T cd00200 9 TGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGH-----TGPVRDVAASADGTYLASGSS---DKTIRLWDL 80 (289)
T ss_pred CCCEEEEEEcCCCCEEEEeecCcEEEEEEeeCCCcEEEEecC-----CcceeEEEECCCCCEEEEEcC---CCeEEEEEc
Confidence 46799999988 78899999999999999 43333333333 356778888899988888887 788887776
Q ss_pred CCC-CceeccCCCCceEEEEEecCCCCCCCCcceEEEEcC-CCcEEEEEEecCCcccceeeEEeeeCCCCCceeeEEEEe
Q 002318 98 KWS-KPRVLSKLKGLVVNAVAWNRQQITEASTKEIILGTD-TGQLHEMAVDEKDKREKYIKLLFELNELPEAFMGLQMET 175 (936)
Q Consensus 98 ~~~-k~k~L~klkg~~I~sVaw~~~~~~~~st~~iLiGt~-~G~i~e~~i~~~~~~~~~~k~v~~l~~~~~~I~gi~~~~ 175 (936)
... ..+.+.. ....|.+++|++. +.+++++. +|.|....+... +.+..+...+++|+++.|..
T Consensus 81 ~~~~~~~~~~~-~~~~i~~~~~~~~-------~~~~~~~~~~~~i~~~~~~~~-------~~~~~~~~~~~~i~~~~~~~ 145 (289)
T cd00200 81 ETGECVRTLTG-HTSYVSSVAFSPD-------GRILSSSSRDKTIKVWDVETG-------KCLTTLRGHTDWVNSVAFSP 145 (289)
T ss_pred CcccceEEEec-cCCcEEEEEEcCC-------CCEEEEecCCCeEEEEECCCc-------EEEEEeccCCCcEEEEEEcC
Confidence 553 2233321 2336999999943 35666655 899988877532 22223332235799999873
Q ss_pred eccCCCceEEEEEECCCeEEEEec
Q 002318 176 ASLSNGTRYYVMAVTPTRLYSFTG 199 (936)
Q Consensus 176 ~~~~~~~~~~i~ast~~rly~f~~ 199 (936)
..++++..+....++.|.-
T Consensus 146 -----~~~~l~~~~~~~~i~i~d~ 164 (289)
T cd00200 146 -----DGTFVASSSQDGTIKLWDL 164 (289)
T ss_pred -----cCCEEEEEcCCCcEEEEEc
Confidence 2245554443677776653
No 15
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=97.86 E-value=0.0022 Score=74.12 Aligned_cols=137 Identities=16% Similarity=0.214 Sum_probs=67.4
Q ss_pred CCEEEEEecCCeEEEE-eCCCCCceeeEcCCCCCCccceeEEEeCCCCCeEEEEeecCCCccEEEEecCCCCceeccCCC
Q 002318 31 NDVIVLGTSKGWLIRH-DFGAGDSYDIDLSAGRPGEQSIHKVFVDPGGSHCIATIVGSGGAETFYTHAKWSKPRVLSKLK 109 (936)
Q Consensus 31 ~n~l~l~~~~g~l~ri-dl~~~~~~~~~l~~~~~~~~~i~~i~lDp~G~hlli~~~~~~~g~~~Y~~~~~~k~k~L~klk 109 (936)
+|-.++-..+++|..+ ++....+..+++| ..+.+||- |.-++++++ ++-.+|= |...+.+.+..
T Consensus 79 ~n~yAv~~~~~~I~I~kn~~~~~~k~i~~~------~~~~~If~---G~LL~~~~~---~~i~~yD---w~~~~~i~~i~ 143 (443)
T PF04053_consen 79 RNRYAVLESSSTIKIYKNFKNEVVKSIKLP------FSVEKIFG---GNLLGVKSS---DFICFYD---WETGKLIRRID 143 (443)
T ss_dssp SSEEEEE-TTS-EEEEETTEE-TT-----S------S-EEEEE----SSSEEEEET---TEEEEE----TTT--EEEEES
T ss_pred CccEEEEECCCeEEEEEcCccccceEEcCC------cccceEEc---CcEEEEECC---CCEEEEE---hhHcceeeEEe
Confidence 3444444445555553 5544445566665 35788998 887877776 3355553 33334455544
Q ss_pred CceEEEEEecCCCCCCCCcceEEEEcCCCcEEEEEEecC-------CcccceeeEEeeeCCCCCceeeEEEEeeccCCCc
Q 002318 110 GLVVNAVAWNRQQITEASTKEIILGTDTGQLHEMAVDEK-------DKREKYIKLLFELNELPEAFMGLQMETASLSNGT 182 (936)
Q Consensus 110 g~~I~sVaw~~~~~~~~st~~iLiGt~~G~i~e~~i~~~-------~~~~~~~k~v~~l~~~~~~I~gi~~~~~~~~~~~ 182 (936)
--.|+.|.|++. ..-+.+.|++. +|....+.. ++.|..+..+.++. ..|.+..|. +
T Consensus 144 v~~vk~V~Ws~~------g~~val~t~~~-i~il~~~~~~~~~~~~~g~e~~f~~~~E~~---~~IkSg~W~-----~-- 206 (443)
T PF04053_consen 144 VSAVKYVIWSDD------GELVALVTKDS-IYILKYNLEAVAAIPEEGVEDAFELIHEIS---ERIKSGCWV-----E-- 206 (443)
T ss_dssp S-E-EEEEE-TT------SSEEEEE-S-S-EEEEEE-HHHHHHBTTTB-GGGEEEEEEE----S--SEEEEE-----T--
T ss_pred cCCCcEEEEECC------CCEEEEEeCCe-EEEEEecchhcccccccCchhceEEEEEec---ceeEEEEEE-----c--
Confidence 345899999942 12455555554 665554322 34455677777766 468888887 2
Q ss_pred eEEEEEECCCeEEEEecC
Q 002318 183 RYYVMAVTPTRLYSFTGF 200 (936)
Q Consensus 183 ~~~i~ast~~rly~f~~~ 200 (936)
.++++ ||..||..+.|+
T Consensus 207 d~fiY-tT~~~lkYl~~G 223 (443)
T PF04053_consen 207 DCFIY-TTSNHLKYLVNG 223 (443)
T ss_dssp TEEEE-E-TTEEEEEETT
T ss_pred CEEEE-EcCCeEEEEEcC
Confidence 36666 665688878764
No 16
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=97.67 E-value=0.0013 Score=63.82 Aligned_cols=129 Identities=19% Similarity=0.148 Sum_probs=99.6
Q ss_pred CCChHHHHHHhcCcChHHHHHHHHHHHhhcccCchhHHHHHHHHHHHHHHHHHHhhhhcccchhhccchHHHHHHHHHHH
Q 002318 420 ILSFEEITLKFISVSEQDALRTFLLRKLDNLAKDDKCQITMISTWATELYLDKINRLLLEDDTALENRSSEYQSIMREFR 499 (936)
Q Consensus 420 ~~~~E~v~lkFl~~~~~~~L~~YL~~~l~~l~~~~~~~~~lL~~Wl~ely~~~l~~~~~e~~~~~~~~~~~~~~~~~~l~ 499 (936)
..+.+.|+..|.+.+....|..||......-..+ .-+.+-++++|... . ..++-
T Consensus 7 ~~~~~~vv~~~~~~~~~~~l~~yLe~~~~~~~~~-----~~~~~~li~ly~~~-~--------------------~~~ll 60 (140)
T smart00299 7 PIDVSEVVELFEKRNLLEELIPYLESALKLNSEN-----PALQTKLIELYAKY-D--------------------PQKEI 60 (140)
T ss_pred cCCHHHHHHHHHhCCcHHHHHHHHHHHHccCccc-----hhHHHHHHHHHHHH-C--------------------HHHHH
Confidence 3678999999999999999999999866543222 23455566777521 1 23455
Q ss_pred HHHhcccccCCHHHHHHHHHHcCChhHHHHHHHhhhhHHHHHHHHHhc-ccHHHHHHHHhCCCCchhhHHhhHHHHH
Q 002318 500 AFLSDCKDVLDEATTMKLLESYGRVEELVFFASLKEQHEIVVHHYIQQ-GEAKKALQMLRKPAVPIDLQYKFAPDLI 575 (936)
Q Consensus 500 ~fl~~~~~~ld~~tv~~ll~~~g~~e~~l~~a~~~~dy~~ll~~yi~~-~~~~~AL~~L~~~~d~~~li~k~~~~Ll 575 (936)
.|++...+..|.+.+..+|+.+|..+++++++...|+|..++..+++. ++++.|+++..+..+ .+++.+-+...+
T Consensus 61 ~~l~~~~~~yd~~~~~~~c~~~~l~~~~~~l~~k~~~~~~Al~~~l~~~~d~~~a~~~~~~~~~-~~lw~~~~~~~l 136 (140)
T smart00299 61 ERLDNKSNHYDIEKVGKLCEKAKLYEEAVELYKKDGNFKDAIVTLIEHLGNYEKAIEYFVKQNN-PELWAEVLKALL 136 (140)
T ss_pred HHHHhccccCCHHHHHHHHHHcCcHHHHHHHHHhhcCHHHHHHHHHHcccCHHHHHHHHHhCCC-HHHHHHHHHHHH
Confidence 667644457899999999999999999999999999999999999988 899999999998766 477666554444
No 17
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=97.65 E-value=0.0027 Score=67.41 Aligned_cols=150 Identities=9% Similarity=0.064 Sum_probs=99.2
Q ss_pred CCceeEEEEeC--CEEEEEecCCeEEEEeC-CCCCceeeEcCCCCCCccceeEEEeCCCCCeEEEEeecCCCccEEEEec
Q 002318 21 RGVITCMSAGN--DVIVLGTSKGWLIRHDF-GAGDSYDIDLSAGRPGEQSIHKVFVDPGGSHCIATIVGSGGAETFYTHA 97 (936)
Q Consensus 21 ~~~i~~l~v~~--n~l~l~~~~g~l~ridl-~~~~~~~~~l~~~~~~~~~i~~i~lDp~G~hlli~~~~~~~g~~~Y~~~ 97 (936)
.+.|+++++++ ++++.+..+|.|..+|+ .+.....+..+ ...|..+..+|.|.++++++. +|....++.
T Consensus 135 ~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~-----~~~i~~~~~~~~~~~l~~~~~---~~~i~i~d~ 206 (289)
T cd00200 135 TDWVNSVAFSPDGTFVASSSQDGTIKLWDLRTGKCVATLTGH-----TGEVNSVAFSPDGEKLLSSSS---DGTIKLWDL 206 (289)
T ss_pred CCcEEEEEEcCcCCEEEEEcCCCcEEEEEccccccceeEecC-----ccccceEEECCCcCEEEEecC---CCcEEEEEC
Confidence 34689999988 45555555999999999 55555555533 357899999999999999987 788877776
Q ss_pred CCCCceeccCCCCceEEEEEecCCCCCCCCcceEEEEcC-CCcEEEEEEecCCcccceeeEEeeeCCCCCceeeEEEEee
Q 002318 98 KWSKPRVLSKLKGLVVNAVAWNRQQITEASTKEIILGTD-TGQLHEMAVDEKDKREKYIKLLFELNELPEAFMGLQMETA 176 (936)
Q Consensus 98 ~~~k~k~L~klkg~~I~sVaw~~~~~~~~st~~iLiGt~-~G~i~e~~i~~~~~~~~~~k~v~~l~~~~~~I~gi~~~~~ 176 (936)
...+....-+.....|.+++|++. +.++++.. +|.|+...+... +.+..+...+.+|.++.|..
T Consensus 207 ~~~~~~~~~~~~~~~i~~~~~~~~-------~~~~~~~~~~~~i~i~~~~~~-------~~~~~~~~~~~~i~~~~~~~- 271 (289)
T cd00200 207 STGKCLGTLRGHENGVNSVAFSPD-------GYLLASGSEDGTIRVWDLRTG-------ECVQTLSGHTNSVTSLAWSP- 271 (289)
T ss_pred CCCceecchhhcCCceEEEEEcCC-------CcEEEEEcCCCcEEEEEcCCc-------eeEEEccccCCcEEEEEECC-
Confidence 543322221112348999999942 35666555 899998877542 11222222235799999873
Q ss_pred ccCCCceEEEEEECCCeEEEE
Q 002318 177 SLSNGTRYYVMAVTPTRLYSF 197 (936)
Q Consensus 177 ~~~~~~~~~i~ast~~rly~f 197 (936)
+.+.++.++....+.-|
T Consensus 272 ----~~~~l~~~~~d~~i~iw 288 (289)
T cd00200 272 ----DGKRLASGSADGTIRIW 288 (289)
T ss_pred ----CCCEEEEecCCCeEEec
Confidence 22466665666666655
No 18
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=97.42 E-value=0.035 Score=60.42 Aligned_cols=244 Identities=14% Similarity=0.206 Sum_probs=128.8
Q ss_pred EEEEeCCEEEEEecCCeEEEEeC-CCCCceeeEcCCCCCCccceeEEEeCCCCCeEEEEeecCCCccEEEEecCCCC---
Q 002318 26 CMSAGNDVIVLGTSKGWLIRHDF-GAGDSYDIDLSAGRPGEQSIHKVFVDPGGSHCIATIVGSGGAETFYTHAKWSK--- 101 (936)
Q Consensus 26 ~l~v~~n~l~l~~~~g~l~ridl-~~~~~~~~~l~~~~~~~~~i~~i~lDp~G~hlli~~~~~~~g~~~Y~~~~~~k--- 101 (936)
|.+..++.|++|+..| |+..++ ++....++.- ..+|.++-+-|.-.-+++-++ |..++.+...-.
T Consensus 2 c~~~~~~~L~vGt~~G-l~~~~~~~~~~~~~i~~------~~~I~ql~vl~~~~~llvLsd----~~l~~~~L~~l~~~~ 70 (275)
T PF00780_consen 2 CADSWGDRLLVGTEDG-LYVYDLSDPSKPTRILK------LSSITQLSVLPELNLLLVLSD----GQLYVYDLDSLEPVS 70 (275)
T ss_pred CcccCCCEEEEEECCC-EEEEEecCCccceeEee------cceEEEEEEecccCEEEEEcC----CccEEEEchhhcccc
Confidence 6788999999999999 899998 5555443321 134999999888777777664 777766532211
Q ss_pred -------------ceeccCCCCceEEEEEecCCCCCCCCcceEEEEcCCCcEEEEEEecCCccc-ceeeEEeeeCCCCCc
Q 002318 102 -------------PRVLSKLKGLVVNAVAWNRQQITEASTKEIILGTDTGQLHEMAVDEKDKRE-KYIKLLFELNELPEA 167 (936)
Q Consensus 102 -------------~k~L~klkg~~I~sVaw~~~~~~~~st~~iLiGt~~G~i~e~~i~~~~~~~-~~~k~v~~l~~~~~~ 167 (936)
...+.+.+| +..++-. . .......++++.++ .|.-+.+..+.... +..|. +.++ ++
T Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~--v~~f~~~--~-~~~~~~~L~va~kk-~i~i~~~~~~~~~f~~~~ke-~~lp---~~ 140 (275)
T PF00780_consen 71 TSAPLAFPKSRSLPTKLPETKG--VSFFAVN--G-GHEGSRRLCVAVKK-KILIYEWNDPRNSFSKLLKE-ISLP---DP 140 (275)
T ss_pred ccccccccccccccccccccCC--eeEEeec--c-ccccceEEEEEECC-EEEEEEEECCcccccceeEE-EEcC---CC
Confidence 113444454 3344411 1 11122344444444 56666665542233 45566 3666 56
Q ss_pred eeeEEEEeeccCCCceEEEEEECCCeEEEEecCC--chHHHHhhhhcccccccccCCCcCCCcceeeeccCCCceEEEee
Q 002318 168 FMGLQMETASLSNGTRYYVMAVTPTRLYSFTGFG--SLDTVFASYLDRAVHFMELPGEILNSELHFFIKQRRAVHFAWLS 245 (936)
Q Consensus 168 I~gi~~~~~~~~~~~~~~i~ast~~rly~f~~~~--~l~~~f~~~~~~~~~~~el~~~~~~s~~~~~~~~~~~~~faW~t 245 (936)
+.++.|.. +.+++++. ...+ ...-. ....++..-.. ...+ ........++..+.-.+ ..-+.-.+
T Consensus 141 ~~~i~~~~-------~~i~v~~~-~~f~-~idl~~~~~~~l~~~~~~-~~~~--~~~~~~~~~~~~~~~~~-~e~Ll~~~ 207 (275)
T PF00780_consen 141 PSSIAFLG-------NKICVGTS-KGFY-LIDLNTGSPSELLDPSDS-SSSF--KSRNSSSKPLGIFQLSD-NEFLLCYD 207 (275)
T ss_pred cEEEEEeC-------CEEEEEeC-CceE-EEecCCCCceEEeCccCC-cchh--hhcccCCCceEEEEeCC-ceEEEEec
Confidence 89999972 45555443 3333 33211 11111110000 0000 00000000111111001 12222335
Q ss_pred cCceEEEEeccCCCCCCCCCCCccccccccccccccCCCCCCCCccccccCCceEEEEECCEEEEEecCCCcEEEEEEe
Q 002318 246 GAGIYHGGLNFGAQRSSPNGDENFVENKALLSYSKLSEGAEAVKPGSMAVSEYHFLLLMGNKVKVVNRISEQIIEELQF 324 (936)
Q Consensus 246 ~~gi~~g~i~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~p~si~lT~fHillL~~~~l~ivn~l~~~vv~~~~~ 324 (936)
+.|+|+..-. .. .. ...++- ...|.+++....|++++.++.|.|.+..+++.++....
T Consensus 208 ~~g~fv~~~G----------~~--~r-~~~i~W--------~~~p~~~~~~~pyli~~~~~~iEV~~~~~~~lvQ~i~~ 265 (275)
T PF00780_consen 208 NIGVFVNKNG----------EP--SR-KSTIQW--------SSAPQSVAYSSPYLIAFSSNSIEVRSLETGELVQTIPL 265 (275)
T ss_pred ceEEEEcCCC----------Cc--Cc-ccEEEc--------CCchhEEEEECCEEEEECCCEEEEEECcCCcEEEEEEC
Confidence 5555552211 00 00 111111 12589999999999999999999999999999998776
No 19
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=97.26 E-value=0.0059 Score=70.54 Aligned_cols=161 Identities=16% Similarity=0.212 Sum_probs=111.8
Q ss_pred eeEEEEeCCEEEEEe-cCCeEEEEeC-CCCCceeeEcCCCCCCccceeEEEeCCCCCeEEEEeecCCCccEEEEecCCCC
Q 002318 24 ITCMSAGNDVIVLGT-SKGWLIRHDF-GAGDSYDIDLSAGRPGEQSIHKVFVDPGGSHCIATIVGSGGAETFYTHAKWSK 101 (936)
Q Consensus 24 i~~l~v~~n~l~l~~-~~g~l~ridl-~~~~~~~~~l~~~~~~~~~i~~i~lDp~G~hlli~~~~~~~g~~~Y~~~~~~k 101 (936)
...+.+.+|.+++.- ..+.+...++ .|+..+-..+-.. .....|.++++.|.|+++.+.+. .|..|.++....+
T Consensus 433 ~i~ftid~~k~~~~s~~~~~le~~el~~ps~kel~~~~~~-~~~~~I~~l~~SsdG~yiaa~~t---~g~I~v~nl~~~~ 508 (691)
T KOG2048|consen 433 AISFTIDKNKLFLVSKNIFSLEEFELETPSFKELKSIQSQ-AKCPSISRLVVSSDGNYIAAIST---RGQIFVYNLETLE 508 (691)
T ss_pred eeEEEecCceEEEEecccceeEEEEecCcchhhhhccccc-cCCCcceeEEEcCCCCEEEEEec---cceEEEEEcccce
Confidence 355677777777766 7788888898 7776543333222 23478999999999999988887 7999999887777
Q ss_pred ceecc-CCCCceEEEEEecCCCCCCCCcceEEEEcCCCcEEEEEEecCC--cccceeeEEeeeCC----CCCceeeEEEE
Q 002318 102 PRVLS-KLKGLVVNAVAWNRQQITEASTKEIILGTDTGQLHEMAVDEKD--KREKYIKLLFELNE----LPEAFMGLQME 174 (936)
Q Consensus 102 ~k~L~-klkg~~I~sVaw~~~~~~~~st~~iLiGt~~G~i~e~~i~~~~--~~~~~~k~v~~l~~----~~~~I~gi~~~ 174 (936)
-+.|. ++ +..||++++.++. ...+++.|+++++||+.++.++ +..+.-. +.+|. .++++.||.+.
T Consensus 509 ~~~l~~rl-n~~vTa~~~~~~~-----~~~lvvats~nQv~efdi~~~~l~~ws~~nt--~nlpk~~~~l~~~~~gisfd 580 (691)
T KOG2048|consen 509 SHLLKVRL-NIDVTAAAFSPFV-----RNRLVVATSNNQVFEFDIEARNLTRWSKNNT--RNLPKEPKTLIPGIPGISFD 580 (691)
T ss_pred eecchhcc-Ccceeeeeccccc-----cCcEEEEecCCeEEEEecchhhhhhhhhccc--cccccChhhcCCCCceEEeC
Confidence 77776 44 4899999999653 4589999999999999996652 1111111 23332 24679999998
Q ss_pred eeccCCCceEEEEEECCCeEEEEec
Q 002318 175 TASLSNGTRYYVMAVTPTRLYSFTG 199 (936)
Q Consensus 175 ~~~~~~~~~~~i~ast~~rly~f~~ 199 (936)
| ++..+++++-++-..+..|.+
T Consensus 581 --~-~n~s~~~~~~a~w~~~id~~~ 602 (691)
T KOG2048|consen 581 --P-KNSSRFIVYDAHWSCLIDFSL 602 (691)
T ss_pred --C-CCccEEEEEcCcEEEEEecCC
Confidence 2 355566666444445555544
No 20
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=97.17 E-value=0.073 Score=61.48 Aligned_cols=68 Identities=12% Similarity=0.029 Sum_probs=50.5
Q ss_pred CChhHHHHHHHhhhhHHHHHHHHHhcccHHHHHHHHhCCCCc-hhhHHhhHHHHHhHChH-HHHHHHHcc
Q 002318 522 GRVEELVFFASLKEQHEIVVHHYIQQGEAKKALQMLRKPAVP-IDLQYKFAPDLIMLDAY-ETVESWMTT 589 (936)
Q Consensus 522 g~~e~~l~~a~~~~dy~~ll~~yi~~~~~~~AL~~L~~~~d~-~~li~k~~~~Ll~~~p~-~ti~ll~~~ 589 (936)
..+-.+.+.-..+||-..+++++++-++|.+|+.+-.+++.. .+..+.|+.||-+.+.- ++-..+.+.
T Consensus 761 ~~~gLAaeIF~k~gD~ksiVqlHve~~~W~eAFalAe~hPe~~~dVy~pyaqwLAE~DrFeEAqkAfhkA 830 (1081)
T KOG1538|consen 761 DSPGLAAEIFLKMGDLKSLVQLHVETQRWDEAFALAEKHPEFKDDVYMPYAQWLAENDRFEEAQKAFHKA 830 (1081)
T ss_pred cccchHHHHHHHhccHHHHhhheeecccchHhHhhhhhCccccccccchHHHHhhhhhhHHHHHHHHHHh
Confidence 334445556677889999999999999999999999988753 36678999999876553 344444443
No 21
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=97.15 E-value=0.009 Score=65.72 Aligned_cols=134 Identities=13% Similarity=0.074 Sum_probs=97.7
Q ss_pred CceeEEEEeCCEEEEE--ecCCeEEEEeC-CCCCceeeEcCCCCCCccceeEEEeCCCCCeEEEEeecCCCccEEEEecC
Q 002318 22 GVITCMSAGNDVIVLG--TSKGWLIRHDF-GAGDSYDIDLSAGRPGEQSIHKVFVDPGGSHCIATIVGSGGAETFYTHAK 98 (936)
Q Consensus 22 ~~i~~l~v~~n~l~l~--~~~g~l~ridl-~~~~~~~~~l~~~~~~~~~i~~i~lDp~G~hlli~~~~~~~g~~~Y~~~~ 98 (936)
..++|.+++.+=+.+| +.+|.|-.||+ .++++.+|+.+ .++|.-|-+..+|.+|.+.++ +|.+..+...
T Consensus 348 v~~ts~~fHpDgLifgtgt~d~~vkiwdlks~~~~a~Fpgh-----t~~vk~i~FsENGY~Lat~ad---d~~V~lwDLR 419 (506)
T KOG0289|consen 348 VEYTSAAFHPDGLIFGTGTPDGVVKIWDLKSQTNVAKFPGH-----TGPVKAISFSENGYWLATAAD---DGSVKLWDLR 419 (506)
T ss_pred ceeEEeeEcCCceEEeccCCCceEEEEEcCCccccccCCCC-----CCceeEEEeccCceEEEEEec---CCeEEEEEeh
Confidence 3489999999866555 57899999999 88899888876 579999999999999999999 9988888753
Q ss_pred CCC-ceeccCCCCceEEEEEecCCCCCCCCcceEEEEcCCCcEEEEEEecCCcccceeeEEeeeCCCCCceeeEEEE
Q 002318 99 WSK-PRVLSKLKGLVVNAVAWNRQQITEASTKEIILGTDTGQLHEMAVDEKDKREKYIKLLFELNELPEAFMGLQME 174 (936)
Q Consensus 99 ~~k-~k~L~klkg~~I~sVaw~~~~~~~~st~~iLiGt~~G~i~e~~i~~~~~~~~~~k~v~~l~~~~~~I~gi~~~ 174 (936)
-.+ .+.+.---+..+.++.|+. +..-+.+|.++-.||.+. +..+.|..+-++++..++.+|+.+.
T Consensus 420 Kl~n~kt~~l~~~~~v~s~~fD~------SGt~L~~~g~~l~Vy~~~-----k~~k~W~~~~~~~~~sg~st~v~Fg 485 (506)
T KOG0289|consen 420 KLKNFKTIQLDEKKEVNSLSFDQ------SGTYLGIAGSDLQVYICK-----KKTKSWTEIKELADHSGLSTGVRFG 485 (506)
T ss_pred hhcccceeeccccccceeEEEcC------CCCeEEeecceeEEEEEe-----cccccceeeehhhhcccccceeeec
Confidence 322 2222111234799999993 222556677777777763 2234677776676644678999885
No 22
>PF13639 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 1IYM_A 2EP4_A 2ECT_A 2JRJ_A 2ECN_A 2ECM_A 3NG2_A 2EA6_A ....
Probab=97.12 E-value=0.00027 Score=53.79 Aligned_cols=37 Identities=24% Similarity=0.735 Sum_probs=30.5
Q ss_pred ccccccchhhhhcccccccccccCCCCCCCCEEEEcCCChhHHHhHHHHHhhc
Q 002318 834 EDCGVCRRKILVAGRDYRMARGYASVGPMAPFYVFPCGHAFHAQCLIAHVTQC 886 (936)
Q Consensus 834 ~~C~~C~k~L~~~~~~~~~~~~~~~~~~~~~fvvFpCgH~fH~~CL~~~~~~~ 886 (936)
+.|.+|...+... . .++.++|||.||.+|+...+...
T Consensus 1 d~C~IC~~~~~~~----~------------~~~~l~C~H~fh~~Ci~~~~~~~ 37 (44)
T PF13639_consen 1 DECPICLEEFEDG----E------------KVVKLPCGHVFHRSCIKEWLKRN 37 (44)
T ss_dssp -CETTTTCBHHTT----S------------CEEEETTSEEEEHHHHHHHHHHS
T ss_pred CCCcCCChhhcCC----C------------eEEEccCCCeeCHHHHHHHHHhC
Confidence 3699999998761 2 78999999999999999988653
No 23
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.06 E-value=0.24 Score=60.83 Aligned_cols=118 Identities=15% Similarity=0.171 Sum_probs=83.2
Q ss_pred CCceeEEEEeCCEEEEEecCCeEEEEeCCCCCceeeEcCCCCCCccceeEEEeCCCCCeEEEEeecCCCccEEEEecCCC
Q 002318 21 RGVITCMSAGNDVIVLGTSKGWLIRHDFGAGDSYDIDLSAGRPGEQSIHKVFVDPGGSHCIATIVGSGGAETFYTHAKWS 100 (936)
Q Consensus 21 ~~~i~~l~v~~n~l~l~~~~g~l~ridl~~~~~~~~~l~~~~~~~~~i~~i~lDp~G~hlli~~~~~~~g~~~Y~~~~~~ 100 (936)
+..+++.|+.+-++++|++.|.++..|...+ .. +++..-...++|+.+.....|..++.... +|.+..+.-+..
T Consensus 89 ~~~v~s~a~~~~~ivi~Ts~ghvl~~d~~~n-L~--~~~~ne~v~~~Vtsvafn~dg~~l~~G~~---~G~V~v~D~~~~ 162 (1206)
T KOG2079|consen 89 AAGVISSAIVVVPIVIGTSHGHVLLSDMTGN-LG--PLHQNERVQGPVTSVAFNQDGSLLLAGLG---DGHVTVWDMHRA 162 (1206)
T ss_pred CcceeeeeeeeeeEEEEcCchhhhhhhhhcc-cc--hhhcCCccCCcceeeEecCCCceeccccC---CCcEEEEEccCC
Confidence 3457888999999999999999999998332 11 12222223578999999999998888776 899999998887
Q ss_pred CceeccCCCCceEEEEEecCCCCCCCCcceEEEEcCCCcEEEEEEec
Q 002318 101 KPRVLSKLKGLVVNAVAWNRQQITEASTKEIILGTDTGQLHEMAVDE 147 (936)
Q Consensus 101 k~k~L~klkg~~I~sVaw~~~~~~~~st~~iLiGt~~G~i~e~~i~~ 147 (936)
|+-.+-...|.+.++|-.... ++..| ..|.|...|..|+..+..
T Consensus 163 k~l~~i~e~~ap~t~vi~v~~-t~~nS--~llt~D~~Gsf~~lv~nk 206 (1206)
T KOG2079|consen 163 KILKVITEHGAPVTGVIFVGR-TSQNS--KLLTSDTGGSFWKLVFNK 206 (1206)
T ss_pred cceeeeeecCCccceEEEEEE-eCCCc--EEEEccCCCceEEEEech
Confidence 665544456666665544311 12222 577777889999998865
No 24
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=97.02 E-value=0.48 Score=55.09 Aligned_cols=77 Identities=12% Similarity=0.047 Sum_probs=39.9
Q ss_pred ceeEEEeecCCCeEEEEeCC-cEEEEEcccchhhHHHHHHchhhHHHHHHhcCChhhH----HHHHHHHHHHHHhcCCHH
Q 002318 334 GIIGLCSDATAGVFYAYDQN-SIFQVSVNDEGRDMWKVYLDMKEYAAALANCRDPLQR----DQVYLVQAEAAFATKDFH 408 (936)
Q Consensus 334 ~~~gl~~D~~~~~~~i~S~~-~i~~~~~~~e~~~~W~~ll~~~~f~~Al~~~~~~~~~----~~I~~~~~~~L~~~g~y~ 408 (936)
.++|... ..+.+|++-.+ .|+.+.+ +-.-...+..+-+++|++|+++.+...-. ..-+.+-+.+|.++|-++
T Consensus 236 yllgy~~--~~~~ly~~Dr~~~v~~~~l-d~~~~~fk~av~~~d~~~v~~~i~~~~ll~~i~~~~~~~i~~fL~~~G~~e 312 (443)
T PF04053_consen 236 YLLGYLP--KENRLYLIDRDGNVISYEL-DLSELEFKTAVLRGDFEEVLRMIAASNLLPNIPKDQGQSIARFLEKKGYPE 312 (443)
T ss_dssp EEEEEET--TTTEEEEE-TT--EEEEE---HHHHHHHHHHHTT-HHH-----HHHHTGGG--HHHHHHHHHHHHHTT-HH
T ss_pred EEEEEEc--cCCEEEEEECCCCEEEEEE-CHHHHHHHHHHHcCChhhhhhhhhhhhhcccCChhHHHHHHHHHHHCCCHH
Confidence 4555542 35778888765 4555544 34556677788999999987775421111 233566677777777666
Q ss_pred HHHHH
Q 002318 409 RAASF 413 (936)
Q Consensus 409 ~Aa~~ 413 (936)
.|.+.
T Consensus 313 ~AL~~ 317 (443)
T PF04053_consen 313 LALQF 317 (443)
T ss_dssp HHHHH
T ss_pred HHHhh
Confidence 66554
No 25
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=96.70 E-value=0.082 Score=54.58 Aligned_cols=154 Identities=6% Similarity=0.069 Sum_probs=105.3
Q ss_pred eeEEEEeCCEEEEEecCCeEEEEeC-CCCCceeeEcCCCCCCccceeEEEeCCCCCeEEEEeecCCCccEEEEecCCCC-
Q 002318 24 ITCMSAGNDVIVLGTSKGWLIRHDF-GAGDSYDIDLSAGRPGEQSIHKVFVDPGGSHCIATIVGSGGAETFYTHAKWSK- 101 (936)
Q Consensus 24 i~~l~v~~n~l~l~~~~g~l~ridl-~~~~~~~~~l~~~~~~~~~i~~i~lDp~G~hlli~~~~~~~g~~~Y~~~~~~k- 101 (936)
...+...+++||-|-.+|++-.||+ .|.--..++.+ ++|+.+-+.|+-.+||++.+ +|....+....+.
T Consensus 88 aVgF~~dgrWMyTgseDgt~kIWdlR~~~~qR~~~~~------spVn~vvlhpnQteLis~dq---sg~irvWDl~~~~c 158 (311)
T KOG0315|consen 88 AVGFQCDGRWMYTGSEDGTVKIWDLRSLSCQRNYQHN------SPVNTVVLHPNQTELISGDQ---SGNIRVWDLGENSC 158 (311)
T ss_pred EEEEeecCeEEEecCCCceEEEEeccCcccchhccCC------CCcceEEecCCcceEEeecC---CCcEEEEEccCCcc
Confidence 4456667889999999999999999 66554555554 67999999999999999999 8999888765552
Q ss_pred ceeccCCCCceEEEEEecCCCCCCCCcceEEEE-cCCCcEEEEEEecCCcccceeeEEeeeCCCCCceeeEEEEeeccCC
Q 002318 102 PRVLSKLKGLVVNAVAWNRQQITEASTKEIILG-TDTGQLHEMAVDEKDKREKYIKLLFELNELPEAFMGLQMETASLSN 180 (936)
Q Consensus 102 ~k~L~klkg~~I~sVaw~~~~~~~~st~~iLiG-t~~G~i~e~~i~~~~~~~~~~k~v~~l~~~~~~I~gi~~~~~~~~~ 180 (936)
.+.|.---+..|+|++..+ .|+.|+| +++|..|--.+..+. ...-+..+.+++--.+-|+...+. .
T Consensus 159 ~~~liPe~~~~i~sl~v~~-------dgsml~a~nnkG~cyvW~l~~~~-~~s~l~P~~k~~ah~~~il~C~lS-----P 225 (311)
T KOG0315|consen 159 THELIPEDDTSIQSLTVMP-------DGSMLAAANNKGNCYVWRLLNHQ-TASELEPVHKFQAHNGHILRCLLS-----P 225 (311)
T ss_pred ccccCCCCCcceeeEEEcC-------CCcEEEEecCCccEEEEEccCCC-ccccceEhhheecccceEEEEEEC-----C
Confidence 2233333567899888873 2466666 677999987776531 111234444443212334544443 3
Q ss_pred CceEEEEEECCCeEEEEec
Q 002318 181 GTRYYVMAVTPTRLYSFTG 199 (936)
Q Consensus 181 ~~~~~i~ast~~rly~f~~ 199 (936)
+.++++-+++..-.+-|.-
T Consensus 226 d~k~lat~ssdktv~iwn~ 244 (311)
T KOG0315|consen 226 DVKYLATCSSDKTVKIWNT 244 (311)
T ss_pred CCcEEEeecCCceEEEEec
Confidence 4578888788888887854
No 26
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=96.61 E-value=0.59 Score=54.18 Aligned_cols=142 Identities=15% Similarity=0.197 Sum_probs=93.5
Q ss_pred eCCEEEEEecCCeEEEEeC-CCCCceeeEcCCCCCCccceeEEEeCCCCCeEEEEeecCCCccEEEEecCCCC-ceeccC
Q 002318 30 GNDVIVLGTSKGWLIRHDF-GAGDSYDIDLSAGRPGEQSIHKVFVDPGGSHCIATIVGSGGAETFYTHAKWSK-PRVLSK 107 (936)
Q Consensus 30 ~~n~l~l~~~~g~l~ridl-~~~~~~~~~l~~~~~~~~~i~~i~lDp~G~hlli~~~~~~~g~~~Y~~~~~~k-~k~L~k 107 (936)
+.|++++|+.. .||+|+- ...-..-.++. ...|+-+--+|.|.||.|-+. +|.+.-++....| .+.+.-
T Consensus 187 s~n~laValg~-~vylW~~~s~~v~~l~~~~-----~~~vtSv~ws~~G~~LavG~~---~g~v~iwD~~~~k~~~~~~~ 257 (484)
T KOG0305|consen 187 SANVLAVALGQ-SVYLWSASSGSVTELCSFG-----EELVTSVKWSPDGSHLAVGTS---DGTVQIWDVKEQKKTRTLRG 257 (484)
T ss_pred cCCeEEEEecc-eEEEEecCCCceEEeEecC-----CCceEEEEECCCCCEEEEeec---CCeEEEEehhhccccccccC
Confidence 45688888887 8999988 43322233343 467899999999999999998 8999888765543 333321
Q ss_pred CCCceEEEEEecCCCCCCCCcceEEEEcCCCcEEEEEEecCCcccceeeEEeeeCCCCCceeeEEEEeeccCCCceEEEE
Q 002318 108 LKGLVVNAVAWNRQQITEASTKEIILGTDTGQLHEMAVDEKDKREKYIKLLFELNELPEAFMGLQMETASLSNGTRYYVM 187 (936)
Q Consensus 108 lkg~~I~sVaw~~~~~~~~st~~iLiGt~~G~i~e~~i~~~~~~~~~~k~v~~l~~~~~~I~gi~~~~~~~~~~~~~~i~ 187 (936)
...-.|-+++|+. ..+..|+.+|.|....+...+. .+. .++... ..|+|++|..- .++++-
T Consensus 258 ~h~~rvg~laW~~--------~~lssGsr~~~I~~~dvR~~~~---~~~-~~~~H~--qeVCgLkws~d-----~~~lAS 318 (484)
T KOG0305|consen 258 SHASRVGSLAWNS--------SVLSSGSRDGKILNHDVRISQH---VVS-TLQGHR--QEVCGLKWSPD-----GNQLAS 318 (484)
T ss_pred CcCceeEEEeccC--------ceEEEecCCCcEEEEEEecchh---hhh-hhhccc--ceeeeeEECCC-----CCeecc
Confidence 1335899999992 2788999999999988865421 122 233343 45999999742 122222
Q ss_pred EECCCeEEEEec
Q 002318 188 AVTPTRLYSFTG 199 (936)
Q Consensus 188 ast~~rly~f~~ 199 (936)
--.+.+++-|.+
T Consensus 319 GgnDN~~~Iwd~ 330 (484)
T KOG0305|consen 319 GGNDNVVFIWDG 330 (484)
T ss_pred CCCccceEeccC
Confidence 223456666655
No 27
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=96.61 E-value=0.71 Score=58.41 Aligned_cols=139 Identities=14% Similarity=0.105 Sum_probs=64.4
Q ss_pred HHHHHcCChhHHHHHHHhh--------hhHHHHHHHHHhcccHHHHHHHHhCC----CCchhhHHhhHHHHH-hHChHHH
Q 002318 516 KLLESYGRVEELVFFASLK--------EQHEIVVHHYIQQGEAKKALQMLRKP----AVPIDLQYKFAPDLI-MLDAYET 582 (936)
Q Consensus 516 ~ll~~~g~~e~~l~~a~~~--------~dy~~ll~~yi~~~~~~~AL~~L~~~----~d~~~li~k~~~~Ll-~~~p~~t 582 (936)
..+...|..++++.+.+.. .-+..+...|...|++++|++.+.+. ++....++..+..+. ..+++++
T Consensus 575 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 654 (899)
T TIGR02917 575 QYYLGKGQLKKALAILNEAADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPDSALALLLLADAYAVMKNYAKA 654 (899)
T ss_pred HHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHH
Confidence 3445566666666655543 12344556666777777777766532 221233333333332 2445555
Q ss_pred HHHHHccCCCCCCcchhH--hhh-cCCCCCCCCChHHHHHHHHHHHhhcCCCCHhHHHHHHHHhhcCCChHHHHHHHHHh
Q 002318 583 VESWMTTNNLNPRKLIPA--MMR-YSSEPHAKNETHEVIKYLEFCVHRLHNEDPGVHNLLLSLYAKQEDDSALLRFLQCK 659 (936)
Q Consensus 583 i~ll~~~~~ld~~~li~~--L~~-~~~~~~~~~~~~~~~~YLe~li~~~~~~~~~~hn~ll~Ly~~~~~~~~Ll~fL~~~ 659 (936)
+..+.+....+|...... +.. +.. ....+.+..+++.+....+ .++..+..+..+|...++.++.+.+++..
T Consensus 655 ~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~A~~~~~~~ 729 (899)
T TIGR02917 655 ITSLKRALELKPDNTEAQIGLAQLLLA----AKRTESAKKIAKSLQKQHP-KAALGFELEGDLYLRQKDYPAAIQAYRKA 729 (899)
T ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhhCc-CChHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 555543323333321110 000 000 0123456666666654433 33455555555665554445555555443
No 28
>PF12861 zf-Apc11: Anaphase-promoting complex subunit 11 RING-H2 finger
Probab=96.48 E-value=0.0034 Score=54.07 Aligned_cols=51 Identities=24% Similarity=0.513 Sum_probs=40.2
Q ss_pred ecccccccccchhhhhcccccccccccCCCCCCCCEEEEcCCChhHHHhHHHHHhhc
Q 002318 830 IDRDEDCGVCRRKILVAGRDYRMARGYASVGPMAPFYVFPCGHAFHAQCLIAHVTQC 886 (936)
Q Consensus 830 i~~~~~C~~C~k~L~~~~~~~~~~~~~~~~~~~~~fvvFpCgH~fH~~CL~~~~~~~ 886 (936)
+..++.|.+|..++.+ .- ..+..++...|++.-.|+|.||..|+.+-+...
T Consensus 18 ~~~dd~CgICr~~fdg-----~C-p~Ck~Pgd~Cplv~g~C~H~FH~hCI~kWl~~~ 68 (85)
T PF12861_consen 18 VANDDVCGICRMPFDG-----CC-PDCKFPGDDCPLVWGKCSHNFHMHCILKWLSTQ 68 (85)
T ss_pred cCCCCceeeEeccccc-----CC-CCccCCCCCCceeeccCccHHHHHHHHHHHccc
Confidence 4568899999999987 21 234445667799988999999999999988654
No 29
>PLN03077 Protein ECB2; Provisional
Probab=96.42 E-value=0.98 Score=57.70 Aligned_cols=141 Identities=11% Similarity=0.073 Sum_probs=79.4
Q ss_pred HHHHHHHcCChhHHHHHHHhh---------hhHHHHHHHHHhcccHHHHHHHHhCCCCc-hhhHHhhHHHHH-hHChHHH
Q 002318 514 TMKLLESYGRVEELVFFASLK---------EQHEIVVHHYIQQGEAKKALQMLRKPAVP-IDLQYKFAPDLI-MLDAYET 582 (936)
Q Consensus 514 v~~ll~~~g~~e~~l~~a~~~---------~dy~~ll~~yi~~~~~~~AL~~L~~~~d~-~~li~k~~~~Ll-~~~p~~t 582 (936)
+...+...|..+.+..+.... .-|..++..|...|++++|.+++.+...+ ...+.-....+. ...++++
T Consensus 294 ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~~s~n~li~~~~~~g~~~~A 373 (857)
T PLN03077 294 VISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMISGYEKNGLPDKA 373 (857)
T ss_pred HHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCCCCeeeHHHHHHHHHhCCCHHHH
Confidence 333344456655554443322 23778999999999999999999887532 111111112222 2456778
Q ss_pred HHHHHcc--CCCCCCc--chhHhhhcCCCCCCCCChHHHHHHHHHHHhhcCCCCHhHHHHHHHHhhcCCChHHHHHHHHH
Q 002318 583 VESWMTT--NNLNPRK--LIPAMMRYSSEPHAKNETHEVIKYLEFCVHRLHNEDPGVHNLLLSLYAKQEDDSALLRFLQC 658 (936)
Q Consensus 583 i~ll~~~--~~ld~~~--li~~L~~~~~~~~~~~~~~~~~~YLe~li~~~~~~~~~~hn~ll~Ly~~~~~~~~Ll~fL~~ 658 (936)
+++|-+. ..+.|.. +...+..+... ...+.+...++.+.......+..++|.++..|++.++-++....++.
T Consensus 374 ~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~----g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~ 449 (857)
T PLN03077 374 LETYALMEQDNVSPDEITIASVLSACACL----GDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHN 449 (857)
T ss_pred HHHHHHHHHhCCCCCceeHHHHHHHHhcc----chHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 8877432 3444443 22222222211 12345667777776655555677888888888886644445555544
No 30
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=96.39 E-value=0.14 Score=60.57 Aligned_cols=148 Identities=11% Similarity=0.120 Sum_probs=88.1
Q ss_pred CCCceeEEEEe---CCEEEEEecCCeEEEEeC-CCCC--ceeeEcCCCCCCccceeEEEe-CCCCCeEEEEeecCCCccE
Q 002318 20 GRGVITCMSAG---NDVIVLGTSKGWLIRHDF-GAGD--SYDIDLSAGRPGEQSIHKVFV-DPGGSHCIATIVGSGGAET 92 (936)
Q Consensus 20 ~~~~i~~l~v~---~n~l~l~~~~g~l~ridl-~~~~--~~~~~l~~~~~~~~~i~~i~l-Dp~G~hlli~~~~~~~g~~ 92 (936)
.+..++|+..+ .+.|+.|+.+|+|..||+ .+.. ...+-.......+.-+.-+|+ ++.+.-++.++. ||..
T Consensus 241 ~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~~~~~~~~f~s~ss---DG~i 317 (555)
T KOG1587|consen 241 SPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWLQNEHNTEFFSLSS---DGSI 317 (555)
T ss_pred cCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEEeccCCCCceEEEec---CCcE
Confidence 34568888875 579999999999999999 5554 211111111112234455666 444533666666 8999
Q ss_pred EEEecCCCC-----------c-eeccCCCCceEEEEEecCCCCCCCCcceEEEEcCCCcEEEEEEecCC-cccceeeEE-
Q 002318 93 FYTHAKWSK-----------P-RVLSKLKGLVVNAVAWNRQQITEASTKEIILGTDTGQLHEMAVDEKD-KREKYIKLL- 158 (936)
Q Consensus 93 ~Y~~~~~~k-----------~-k~L~klkg~~I~sVaw~~~~~~~~st~~iLiGt~~G~i~e~~i~~~~-~~~~~~k~v- 158 (936)
.++....-. . +....-+-+.+++++|.+.. -..|++||..|.||.+.-.+.. ..+...|.+
T Consensus 318 ~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~-----p~~FiVGTe~G~v~~~~r~g~~~~~~~~~~~~~ 392 (555)
T KOG1587|consen 318 CSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTD-----PNHFIVGTEEGKVYKGCRKGYTPAPEVSYKGHS 392 (555)
T ss_pred eeeeccccccchhhcccccccccccccccccceeeEeeccCC-----CceEEEEcCCcEEEEEeccCCcccccccccccc
Confidence 998642211 0 00111134689999998432 2379999999999996654431 122222322
Q ss_pred -eeeCCCCCceeeEEEEeec
Q 002318 159 -FELNELPEAFMGLQMETAS 177 (936)
Q Consensus 159 -~~l~~~~~~I~gi~~~~~~ 177 (936)
+... .+||+.|.+..+.
T Consensus 393 ~~~~h--~g~v~~v~~nPF~ 410 (555)
T KOG1587|consen 393 TFITH--IGPVYAVSRNPFY 410 (555)
T ss_pred ccccc--CcceEeeecCCCc
Confidence 2223 4789999887653
No 31
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=96.38 E-value=0.07 Score=56.69 Aligned_cols=144 Identities=18% Similarity=0.252 Sum_probs=94.8
Q ss_pred CceeEEEEeCCEEEEEecCCeEEEEeC-CCCCceeeEcCCCCCCccceeEEEeCCCCCeEEEEeecCCCccEE--EEecC
Q 002318 22 GVITCMSAGNDVIVLGTSKGWLIRHDF-GAGDSYDIDLSAGRPGEQSIHKVFVDPGGSHCIATIVGSGGAETF--YTHAK 98 (936)
Q Consensus 22 ~~i~~l~v~~n~l~l~~~~g~l~ridl-~~~~~~~~~l~~~~~~~~~i~~i~lDp~G~hlli~~~~~~~g~~~--Y~~~~ 98 (936)
++|-|+.|.+|.|++|+.+..++.+|| +-+... +.-. ++=...++.|-+-|+|.=-++++- +|-+. |++.+
T Consensus 136 kkVy~~~v~g~~LvVg~~~r~v~iyDLRn~~~~~--q~re-S~lkyqtR~v~~~pn~eGy~~sSi---eGRVavE~~d~s 209 (323)
T KOG1036|consen 136 KKVYCMDVSGNRLVVGTSDRKVLIYDLRNLDEPF--QRRE-SSLKYQTRCVALVPNGEGYVVSSI---EGRVAVEYFDDS 209 (323)
T ss_pred ceEEEEeccCCEEEEeecCceEEEEEcccccchh--hhcc-ccceeEEEEEEEecCCCceEEEee---cceEEEEccCCc
Confidence 479999999999999999999999999 433322 1111 111367888999997766666666 68776 34433
Q ss_pred ----CC----CceeccCCCC----ceEEEEEecCCCCCCCCcceEEEEcCCCcEEEEEEecCCcccceeeEEeeeCCCCC
Q 002318 99 ----WS----KPRVLSKLKG----LVVNAVAWNRQQITEASTKEIILGTDTGQLHEMAVDEKDKREKYIKLLFELNELPE 166 (936)
Q Consensus 99 ----~~----k~k~L~klkg----~~I~sVaw~~~~~~~~st~~iLiGt~~G~i~e~~i~~~~~~~~~~k~v~~l~~~~~ 166 (936)
+. |.+.+.. +| ++|.+++|.|- .+.|..|.++|.|-.-.+..+ |.+.+++.-+.
T Consensus 210 ~~~~skkyaFkCHr~~~-~~~~~~yPVNai~Fhp~------~~tfaTgGsDG~V~~Wd~~~r-------Krl~q~~~~~~ 275 (323)
T KOG1036|consen 210 EEAQSKKYAFKCHRLSE-KDTEIIYPVNAIAFHPI------HGTFATGGSDGIVNIWDLFNR-------KRLKQLAKYET 275 (323)
T ss_pred hHHhhhceeEEeeeccc-CCceEEEEeceeEeccc------cceEEecCCCceEEEccCcch-------hhhhhccCCCC
Confidence 22 3444433 44 79999999953 358999999997765444332 33444554345
Q ss_pred ceeeEEEEeeccCCCceEEEEEEC
Q 002318 167 AFMGLQMETASLSNGTRYYVMAVT 190 (936)
Q Consensus 167 ~I~gi~~~~~~~~~~~~~~i~ast 190 (936)
.|..+.+... + ..+++|++
T Consensus 276 SI~slsfs~d---G--~~LAia~s 294 (323)
T KOG1036|consen 276 SISSLSFSMD---G--SLLAIASS 294 (323)
T ss_pred ceEEEEeccC---C--CeEEEEec
Confidence 6888887631 2 45666544
No 32
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.33 E-value=0.23 Score=59.17 Aligned_cols=79 Identities=13% Similarity=0.224 Sum_probs=64.2
Q ss_pred HHHHHHHHhcccccCCHHHHHHHHHHcCChhHHHHHHHhhhhHHHHHHHHHhc-ccHHHHHHHHhCCCCchhhHHhhHHH
Q 002318 495 MREFRAFLSDCKDVLDEATTMKLLESYGRVEELVFFASLKEQHEIVVHHYIQQ-GEAKKALQMLRKPAVPIDLQYKFAPD 573 (936)
Q Consensus 495 ~~~l~~fl~~~~~~ld~~tv~~ll~~~g~~e~~l~~a~~~~dy~~ll~~yi~~-~~~~~AL~~L~~~~d~~~li~k~~~~ 573 (936)
+..|-.||++..+ .+.+-++++|.+.|.++|.+|+.-.+|.....+..-+++ ++.++|+++.+.+.| .+|+......
T Consensus 622 rk~LLPFLr~s~~-Y~lekA~eiC~q~~~~~E~VYlLgrmGn~k~AL~lII~el~die~AIefvKeq~D-~eLWe~LI~~ 699 (846)
T KOG2066|consen 622 RKKLLPFLRKSQN-YNLEKALEICSQKNFYEELVYLLGRMGNAKEALKLIINELRDIEKAIEFVKEQDD-SELWEDLINY 699 (846)
T ss_pred HhhhhHHHHhcCC-CCHHHHHHHHHhhCcHHHHHHHHHhhcchHHHHHHHHHHhhCHHHHHHHHHhcCC-HHHHHHHHHH
Confidence 4567788886554 478889999999999999999999999888888887764 899999999999988 4777655444
Q ss_pred HH
Q 002318 574 LI 575 (936)
Q Consensus 574 Ll 575 (936)
-+
T Consensus 700 ~l 701 (846)
T KOG2066|consen 700 SL 701 (846)
T ss_pred hh
Confidence 44
No 33
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=96.29 E-value=1.5 Score=51.80 Aligned_cols=322 Identities=14% Similarity=0.135 Sum_probs=158.0
Q ss_pred CceeEEEEeCCEEEEEecCCeEEEEeCCCCCceeeEcCCCCCCccceeEEEeCCCCCeEEEEeecCCCccEE-EEecCCC
Q 002318 22 GVITCMSAGNDVIVLGTSKGWLIRHDFGAGDSYDIDLSAGRPGEQSIHKVFVDPGGSHCIATIVGSGGAETF-YTHAKWS 100 (936)
Q Consensus 22 ~~i~~l~v~~n~l~l~~~~g~l~ridl~~~~~~~~~l~~~~~~~~~i~~i~lDp~G~hlli~~~~~~~g~~~-Y~~~~~~ 100 (936)
.+.||++...+.++||.+.|.||.++-+......+.-. .+.+.+.-+.+.+.-..+.+.+. +|-+- |.....-
T Consensus 36 v~lTc~dst~~~l~~GsS~G~lyl~~R~~~~~~~~~~~---~~~~~~~~~~vs~~e~lvAagt~---~g~V~v~ql~~~~ 109 (726)
T KOG3621|consen 36 VKLTCVDATEEYLAMGSSAGSVYLYNRHTGEMRKLKNE---GATGITCVRSVSSVEYLVAAGTA---SGRVSVFQLNKEL 109 (726)
T ss_pred EEEEEeecCCceEEEecccceEEEEecCchhhhccccc---CccceEEEEEecchhHhhhhhcC---CceEEeehhhccC
Confidence 35899999999999999999999998744433222111 12355666677777776666666 56553 2221111
Q ss_pred C-----ceeccCCCCceEEEEEecCCCCCCCCcceEEEEcCCCcEEEEEEecCCc-ccceeeEEeeeCCCCCceeeEEEE
Q 002318 101 K-----PRVLSKLKGLVVNAVAWNRQQITEASTKEIILGTDTGQLHEMAVDEKDK-REKYIKLLFELNELPEAFMGLQME 174 (936)
Q Consensus 101 k-----~k~L~klkg~~I~sVaw~~~~~~~~st~~iLiGt~~G~i~e~~i~~~~~-~~~~~k~v~~l~~~~~~I~gi~~~ 174 (936)
+ +.+.-|-.++.|+|++|+. +...+-.|..+|.|....++.+.- .-+ ...+...+ ++|--|-..
T Consensus 110 p~~~~~~t~~d~~~~~rVTal~Ws~------~~~k~ysGD~~Gkv~~~~L~s~~~~~~~-~q~il~~d---s~IVQlD~~ 179 (726)
T KOG3621|consen 110 PRDLDYVTPCDKSHKCRVTALEWSK------NGMKLYSGDSQGKVVLTELDSRQAFLSK-SQEILSED---SEIVQLDYL 179 (726)
T ss_pred CCcceeeccccccCCceEEEEEecc------cccEEeecCCCceEEEEEechhhhhccc-cceeeccC---cceEEeecc
Confidence 1 1223322378999999993 235899999999999999987310 001 11222233 557666554
Q ss_pred eeccCCCceEEEEEECCCeEEEEe-cCCchHHHHhhhhccccccc--ccCCCcCCCcceeeeccCCCceEEE-eecCceE
Q 002318 175 TASLSNGTRYYVMAVTPTRLYSFT-GFGSLDTVFASYLDRAVHFM--ELPGEILNSELHFFIKQRRAVHFAW-LSGAGIY 250 (936)
Q Consensus 175 ~~~~~~~~~~~i~ast~~rly~f~-~~~~l~~~f~~~~~~~~~~~--el~~~~~~s~~~~~~~~~~~~~faW-~t~~gi~ 250 (936)
+..++++|-+|=+-|. ...++.++=++-+++...|. -+|+.-..++...|- .+|..=.| .+-.|.+
T Consensus 180 --------q~~LLVStl~r~~Lc~tE~eti~QIG~k~R~~~~~~GACF~~g~~~~q~~~Iyc--aRPG~RlWead~~G~V 249 (726)
T KOG3621|consen 180 --------QSYLLVSTLTRCILCQTEAETITQIGKKPRKSLIDFGACFFPGQCKAQKPQIYC--ARPGLRLWEADFAGEV 249 (726)
T ss_pred --------cceehHhhhhhhheeecchhHHHHhcCCCcCCccccceEEeeccccCCCceEEE--ecCCCceEEeecceeE
Confidence 3555566644433332 21223222121122111111 122211111122221 23444445 4556666
Q ss_pred EEEeccCCCCCCCCCCCcccccccc--ccccccCCCC-CCCCccccccCCceEEEEECCEEEEEecCCCcEEEEEEecCC
Q 002318 251 HGGLNFGAQRSSPNGDENFVENKAL--LSYSKLSEGA-EAVKPGSMAVSEYHFLLLMGNKVKVVNRISEQIIEELQFDQT 327 (936)
Q Consensus 251 ~g~i~~~~~~~~~~~~~~~~~~~~l--~~~~~l~~~~-~~~~p~si~lT~fHillL~~~~l~ivn~l~~~vv~~~~~~~~ 327 (936)
+.+.-+...-..++.. .+..+.+ =++.-++.++ +-.-++...+...-++.-..-.|.|++.-|.+++--.+-
T Consensus 250 ~~Thqfk~ala~~p~p--~i~~~s~esp~~~~~~~~~q~ls~~k~~~l~~~~vLa~te~Giyv~d~~~~~v~l~se~--- 324 (726)
T KOG3621|consen 250 IKTHQFKDALARPPAP--EIPIRSLESPNQRSLPSGTQHLSLSKSSTLHSDRVLAWTEVGIYVFDSNNSQVYLWSEG--- 324 (726)
T ss_pred EEeeehhhhhccCCCC--cccCCCcCCccccCCCCCccccccceeEEeecceEEEeecceEEEEEeccceEEEeecC---
Confidence 6554332110000000 0100000 0011111110 111234444444444444455577788777776532111
Q ss_pred CCCcccceeEEEeecCCCeEEEEeCCc-EEEEEcccchhhHHHHHHchhhHHHHH
Q 002318 328 SDSISRGIIGLCSDATAGVFYAYDQNS-IFQVSVNDEGRDMWKVYLDMKEYAAAL 381 (936)
Q Consensus 328 ~~~~~~~~~gl~~D~~~~~~~i~S~~~-i~~~~~~~e~~~~W~~ll~~~~f~~Al 381 (936)
.+.++.+.. ..+.+|++..+. +..+.+..-.+-.-+ ++.+|++--++
T Consensus 325 ----~~DI~dVs~--~~neiFvL~~d~~l~~~sv~s~qr~l~~-l~~~G~~m~~~ 372 (726)
T KOG3621|consen 325 ----GHDILDVSH--CGNEIFVLNLDRGLKVESVASRQRKLES-LCRCGKEMFVL 372 (726)
T ss_pred ----CCceeEEee--cCceEEEEecCCceeEEEeehhHHHHHH-HHhhchhhhhh
Confidence 234544443 467888888766 666665444343333 66666444333
No 34
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=96.28 E-value=0.24 Score=52.97 Aligned_cols=151 Identities=13% Similarity=0.159 Sum_probs=94.9
Q ss_pred ceeEEEEeCCEEEEEecCCeEEEEeC---CCCCceeeEcCCCCCCccceeEEEeCCCCCeEEEEeecCCCccEEEEecCC
Q 002318 23 VITCMSAGNDVIVLGTSKGWLIRHDF---GAGDSYDIDLSAGRPGEQSIHKVFVDPGGSHCIATIVGSGGAETFYTHAKW 99 (936)
Q Consensus 23 ~i~~l~v~~n~l~l~~~~g~l~ridl---~~~~~~~~~l~~~~~~~~~i~~i~lDp~G~hlli~~~~~~~g~~~Y~~~~~ 99 (936)
.|.++.-.+-++++|..++.|-.+|+ +......+.++. ......++|-..|.|..++++|+ .+..|-+..-.
T Consensus 144 pi~AfDp~GLifA~~~~~~~IkLyD~Rs~dkgPF~tf~i~~--~~~~ew~~l~FS~dGK~iLlsT~---~s~~~~lDAf~ 218 (311)
T KOG1446|consen 144 PIAAFDPEGLIFALANGSELIKLYDLRSFDKGPFTTFSITD--NDEAEWTDLEFSPDGKSILLSTN---ASFIYLLDAFD 218 (311)
T ss_pred cceeECCCCcEEEEecCCCeEEEEEecccCCCCceeEccCC--CCccceeeeEEcCCCCEEEEEeC---CCcEEEEEccC
Confidence 46777778888888888888888898 233334455543 22478999999999999999998 56555444311
Q ss_pred CCce---eccCC-CCceEEEEEecCCCCCCCCcceEEEEcCCCcEEEEEEecCCcccceeeEEeeeCC-CCCceeeEEEE
Q 002318 100 SKPR---VLSKL-KGLVVNAVAWNRQQITEASTKEIILGTDTGQLHEMAVDEKDKREKYIKLLFELNE-LPEAFMGLQME 174 (936)
Q Consensus 100 ~k~k---~L~kl-kg~~I~sVaw~~~~~~~~st~~iLiGt~~G~i~e~~i~~~~~~~~~~k~v~~l~~-~~~~I~gi~~~ 174 (936)
-..+ ....- .+.. -+.++.|+ +.-||.|..+|.|+-..++.+ +.|..+.+ ..+|++.++|.
T Consensus 219 G~~~~tfs~~~~~~~~~-~~a~ftPd------s~Fvl~gs~dg~i~vw~~~tg-------~~v~~~~~~~~~~~~~~~fn 284 (311)
T KOG1446|consen 219 GTVKSTFSGYPNAGNLP-LSATFTPD------SKFVLSGSDDGTIHVWNLETG-------KKVAVLRGPNGGPVSCVRFN 284 (311)
T ss_pred CcEeeeEeeccCCCCcc-eeEEECCC------CcEEEEecCCCcEEEEEcCCC-------cEeeEecCCCCCCccccccC
Confidence 1100 00000 1122 23345422 224444556699999988654 22223322 23678888875
Q ss_pred eeccCCCceEEEEEECCCeEEEEec
Q 002318 175 TASLSNGTRYYVMAVTPTRLYSFTG 199 (936)
Q Consensus 175 ~~~~~~~~~~~i~ast~~rly~f~~ 199 (936)
. ++..+||+.++|--|..
T Consensus 285 P-------~~~mf~sa~s~l~fw~p 302 (311)
T KOG1446|consen 285 P-------RYAMFVSASSNLVFWLP 302 (311)
T ss_pred C-------ceeeeeecCceEEEEec
Confidence 3 79999999999987864
No 35
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=96.25 E-value=0.56 Score=58.39 Aligned_cols=309 Identities=10% Similarity=0.104 Sum_probs=158.4
Q ss_pred HHHHchhhHHHHHHhcCC----h-hhHHHHHHHHHHHHHhcCCHHHHHHHHHHhc--CCCChHHHHHHhcCcChHHHHHH
Q 002318 369 KVYLDMKEYAAALANCRD----P-LQRDQVYLVQAEAAFATKDFHRAASFYAKIN--YILSFEEITLKFISVSEQDALRT 441 (936)
Q Consensus 369 ~~ll~~~~f~~Al~~~~~----~-~~~~~I~~~~~~~L~~~g~y~~Aa~~y~~~~--~~~~~E~v~lkFl~~~~~~~L~~ 441 (936)
+.+...+.++.|.++-.. . ..-..+...-++.+...|++++|.+.|.+.. +...|..++.-|.+.++.+.-..
T Consensus 131 ~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~~~~~t~n~li~~~~~~g~~~~A~~ 210 (697)
T PLN03081 131 EACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVLLMHVKCGMLIDARRLFDEMPERNLASWGTIIGGLVDAGNYREAFA 210 (697)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHHHHHHHhcCCCHHHHHHHHhcCCCCCeeeHHHHHHHHHHCcCHHHHHH
Confidence 335555677776666321 0 0012445555667777889999999888754 34578888888888887655445
Q ss_pred HHHHHhh-cccCchhHHHHHHHHHHHHHHHHHHhhhhcccchhhccchHHHHHHHHHHHHHHhccc---ccCCHHHHHHH
Q 002318 442 FLLRKLD-NLAKDDKCQITMISTWATELYLDKINRLLLEDDTALENRSSEYQSIMREFRAFLSDCK---DVLDEATTMKL 517 (936)
Q Consensus 442 YL~~~l~-~l~~~~~~~~~lL~~Wl~ely~~~l~~~~~e~~~~~~~~~~~~~~~~~~l~~fl~~~~---~~ld~~tv~~l 517 (936)
.+....+ ....+..+...+|... . ....+. ...++...+.+.. +..--.++.+.
T Consensus 211 lf~~M~~~g~~p~~~t~~~ll~a~-----~-~~~~~~----------------~~~~l~~~~~~~g~~~d~~~~n~Li~~ 268 (697)
T PLN03081 211 LFREMWEDGSDAEPRTFVVMLRAS-----A-GLGSAR----------------AGQQLHCCVLKTGVVGDTFVSCALIDM 268 (697)
T ss_pred HHHHHHHhCCCCChhhHHHHHHHH-----h-cCCcHH----------------HHHHHHHHHHHhCCCccceeHHHHHHH
Confidence 5444332 2233333433333221 1 111110 0111222221111 11123456677
Q ss_pred HHHcCChhHHHHHHHhhh-----hHHHHHHHHHhcccHHHHHHHHhCCCC---chhhHHhhHHHH---Hh-HChHHHHHH
Q 002318 518 LESYGRVEELVFFASLKE-----QHEIVVHHYIQQGEAKKALQMLRKPAV---PIDLQYKFAPDL---IM-LDAYETVES 585 (936)
Q Consensus 518 l~~~g~~e~~l~~a~~~~-----dy~~ll~~yi~~~~~~~AL~~L~~~~d---~~~li~k~~~~L---l~-~~p~~ti~l 585 (936)
+...|+.+++..+.+.+. -|..++.-|.+.|++++|++++.+... ..+ ..-|...+ .. ...+++.++
T Consensus 269 y~k~g~~~~A~~vf~~m~~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd-~~t~~~ll~a~~~~g~~~~a~~i 347 (697)
T PLN03081 269 YSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSID-QFTFSIMIRIFSRLALLEHAKQA 347 (697)
T ss_pred HHHCCCHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhccchHHHHHH
Confidence 778888888887776542 478889999999999999998865421 011 11122211 11 122233333
Q ss_pred H---HccCCCCCCc-chhHhhh-cCCCCCCCCChHHHHHHHHHHHhhcCCCCHhHHHHHHHHhhcCCChHHHHHHHHHhh
Q 002318 586 W---MTTNNLNPRK-LIPAMMR-YSSEPHAKNETHEVIKYLEFCVHRLHNEDPGVHNLLLSLYAKQEDDSALLRFLQCKF 660 (936)
Q Consensus 586 l---~~~~~ld~~~-li~~L~~-~~~~~~~~~~~~~~~~YLe~li~~~~~~~~~~hn~ll~Ly~~~~~~~~Ll~fL~~~~ 660 (936)
+ .+. .+++.. +...|.. |.+. ..-+.+...++.+. ..+...+|.++.-|++.+..++.+.+++.-.
T Consensus 348 ~~~m~~~-g~~~d~~~~~~Li~~y~k~----G~~~~A~~vf~~m~----~~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~ 418 (697)
T PLN03081 348 HAGLIRT-GFPLDIVANTALVDLYSKW----GRMEDARNVFDRMP----RKNLISWNALIAGYGNHGRGTKAVEMFERMI 418 (697)
T ss_pred HHHHHHh-CCCCCeeehHHHHHHHHHC----CCHHHHHHHHHhCC----CCCeeeHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3 222 233322 2222222 2111 12344555544432 2355678888888888665455555554421
Q ss_pred CCCCC-CCC---------cccCChHHHHHHHHh----cC------cceeeehhhhccccHHHHHHHHHh
Q 002318 661 GKGRE-NGP---------EFFYDPKYALRLCLK----EK------RMRACVHIYGMMSMHEEAVALALQ 709 (936)
Q Consensus 661 ~~~~~-~~~---------~~~yd~~~aLrlc~~----~~------~~~~~v~L~~~~g~~~eAl~l~l~ 709 (936)
..+.. +.. ...-+++.|+++... ++ .+..+|-+|++.|+.++|++++-+
T Consensus 419 ~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~ 487 (697)
T PLN03081 419 AEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRR 487 (697)
T ss_pred HhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHH
Confidence 10100 000 011234555555432 22 234578899999999999998754
No 36
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=96.23 E-value=0.0002 Score=69.89 Aligned_cols=132 Identities=17% Similarity=0.229 Sum_probs=95.2
Q ss_pred CCChHHHHHHhcCcChHHHHHHHHHHHhhcccCchhHHHHHHHHHHHHHHHHHHhhhhcccchhhccchHHHHHHHHHHH
Q 002318 420 ILSFEEITLKFISVSEQDALRTFLLRKLDNLAKDDKCQITMISTWATELYLDKINRLLLEDDTALENRSSEYQSIMREFR 499 (936)
Q Consensus 420 ~~~~E~v~lkFl~~~~~~~L~~YL~~~l~~l~~~~~~~~~lL~~Wl~ely~~~l~~~~~e~~~~~~~~~~~~~~~~~~l~ 499 (936)
..+.++|+..|.+.+....|..||......-...+ ..+.+-++++|... .. .+++.
T Consensus 7 ~~~~~~vi~~~~~~~~~~~l~~yLe~~~~~~~~~~----~~~~~~L~~ly~~~-~~-------------------~~~l~ 62 (143)
T PF00637_consen 7 PLEISEVISAFEERNQPEELIEYLEALVKENKENN----PDLHTLLLELYIKY-DP-------------------YEKLL 62 (143)
T ss_dssp TSCSCCCHHHCTTTT-GGGCTCCHHHHHHTSTC-S----HHHHHHHHHHHHCT-TT-------------------CCHHH
T ss_pred ccCHHHHHHHHHhCCCHHHHHHHHHHHHhcccccC----HHHHHHHHHHHHhc-CC-------------------chHHH
Confidence 35677899999999999999999998664332222 23344456667521 10 13677
Q ss_pred HHHhcccccCCHHHHHHHHHHcCChhHHHHHHHhhhhHHHHHHHHHhcccHHHHHHHHhCCCCchhhHHhhHHHHHhH
Q 002318 500 AFLSDCKDVLDEATTMKLLESYGRVEELVFFASLKEQHEIVVHHYIQQGEAKKALQMLRKPAVPIDLQYKFAPDLIML 577 (936)
Q Consensus 500 ~fl~~~~~~ld~~tv~~ll~~~g~~e~~l~~a~~~~dy~~ll~~yi~~~~~~~AL~~L~~~~d~~~li~k~~~~Ll~~ 577 (936)
.||+.+.. +|.+.+.++|.++|..+++++++...|+|+..+..+...+++++|+++..+.++ .+++......++..
T Consensus 63 ~~L~~~~~-yd~~~~~~~c~~~~l~~~a~~Ly~~~~~~~~al~i~~~~~~~~~a~e~~~~~~~-~~l~~~l~~~~l~~ 138 (143)
T PF00637_consen 63 EFLKTSNN-YDLDKALRLCEKHGLYEEAVYLYSKLGNHDEALEILHKLKDYEEAIEYAKKVDD-PELWEQLLKYCLDS 138 (143)
T ss_dssp HTTTSSSS-S-CTHHHHHHHTTTSHHHHHHHHHCCTTHTTCSSTSSSTHCSCCCTTTGGGCSS-SHHHHHHHHHHCTS
T ss_pred HHcccccc-cCHHHHHHHHHhcchHHHHHHHHHHcccHHHHHHHHHHHccHHHHHHHHHhcCc-HHHHHHHHHHHHhc
Confidence 88886554 799999999999999999999999999999988875566889999988888876 47766655555443
No 37
>PLN03218 maturation of RBCL 1; Provisional
Probab=96.21 E-value=1.7 Score=56.17 Aligned_cols=304 Identities=11% Similarity=0.029 Sum_probs=142.5
Q ss_pred cchhhHHHHHHchhhHHHHHHhcCChh-----hH-HHHHHHHHHHHHhcCCHHHHHHHHHHhc--CCCChHHHHHHhcCc
Q 002318 362 DEGRDMWKVYLDMKEYAAALANCRDPL-----QR-DQVYLVQAEAAFATKDFHRAASFYAKIN--YILSFEEITLKFISV 433 (936)
Q Consensus 362 ~e~~~~W~~ll~~~~f~~Al~~~~~~~-----~~-~~I~~~~~~~L~~~g~y~~Aa~~y~~~~--~~~~~E~v~lkFl~~ 433 (936)
.+......-+++.|++++|+++.+.=. .- ..+.......+-..|.+.+|...+.... +...|..++.-+...
T Consensus 371 ~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~pd~~Tyn~LL~a~~k~ 450 (1060)
T PLN03218 371 PEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRNPTLSTFNMLMSVCASS 450 (1060)
T ss_pred hHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHhC
Confidence 344555566778899999998864210 11 1233344455667788888888776643 112344444445555
Q ss_pred ChHHHHHHHHHHHhh-cccCchhHHHHHHHHHHHHHHHHHHhhhhcccchhhccchHHHHHHHHHHHHHHhcccccCCH-
Q 002318 434 SEQDALRTFLLRKLD-NLAKDDKCQITMISTWATELYLDKINRLLLEDDTALENRSSEYQSIMREFRAFLSDCKDVLDE- 511 (936)
Q Consensus 434 ~~~~~L~~YL~~~l~-~l~~~~~~~~~lL~~Wl~ely~~~l~~~~~e~~~~~~~~~~~~~~~~~~l~~fl~~~~~~ld~- 511 (936)
++.+.-...+..... .+..+..+. +-++..|.. ...+ .....-|+...+... .-|.
T Consensus 451 g~~e~A~~lf~~M~~~Gl~pD~~ty-----nsLI~~y~k-~G~v---------------d~A~~vf~eM~~~Gv-~Pdvv 508 (1060)
T PLN03218 451 QDIDGALRVLRLVQEAGLKADCKLY-----TTLISTCAK-SGKV---------------DAMFEVFHEMVNAGV-EANVH 508 (1060)
T ss_pred cCHHHHHHHHHHHHHcCCCCCHHHH-----HHHHHHHHh-CcCH---------------HHHHHHHHHHHHcCC-CCCHH
Confidence 555444333333222 122232222 222333321 1111 111111222211110 1122
Q ss_pred --HHHHHHHHHcCChhHHHHHHHhhh---------hHHHHHHHHHhcccHHHHHHHHhCCCC-----chhhHHhhHHHH-
Q 002318 512 --ATTMKLLESYGRVEELVFFASLKE---------QHEIVVHHYIQQGEAKKALQMLRKPAV-----PIDLQYKFAPDL- 574 (936)
Q Consensus 512 --~tv~~ll~~~g~~e~~l~~a~~~~---------dy~~ll~~yi~~~~~~~AL~~L~~~~d-----~~~li~k~~~~L- 574 (936)
.+++..+...|+.++++.+.+.+. -|..++.-|.+.|++++|++++..... ..+ ..-|...+
T Consensus 509 TynaLI~gy~k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD-~vTynaLI~ 587 (1060)
T PLN03218 509 TFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPD-HITVGALMK 587 (1060)
T ss_pred HHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCc-HHHHHHHHH
Confidence 234455566777777776665542 377777888888888888877654310 011 11111111
Q ss_pred --H-hHChHHHHHHHHcc--CCCCCCc-chhHh-hhcCCCCCCCCChHHHHHHHHHHHhhcCCCCHhHHHHHHHHhhcCC
Q 002318 575 --I-MLDAYETVESWMTT--NNLNPRK-LIPAM-MRYSSEPHAKNETHEVIKYLEFCVHRLHNEDPGVHNLLLSLYAKQE 647 (936)
Q Consensus 575 --l-~~~p~~ti~ll~~~--~~ld~~~-li~~L-~~~~~~~~~~~~~~~~~~YLe~li~~~~~~~~~~hn~ll~Ly~~~~ 647 (936)
. ....+++.+++-+. ..+.|.. ....+ ..|.+. ...+.++..++.+....-..+...++.++..|++.+
T Consensus 588 ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~----G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G 663 (1060)
T PLN03218 588 ACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQK----GDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAG 663 (1060)
T ss_pred HHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhc----CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCC
Confidence 1 12344555555322 1232221 11111 122111 134556666666655443445667777777777755
Q ss_pred ChHHHHHHHHHhhCCCCCCCCcccCChHHHHHHHHhcCcceeeehhhhccccHHHHHHHHH
Q 002318 648 DDSALLRFLQCKFGKGRENGPEFFYDPKYALRLCLKEKRMRACVHIYGMMSMHEEAVALAL 708 (936)
Q Consensus 648 ~~~~Ll~fL~~~~~~~~~~~~~~~yd~~~aLrlc~~~~~~~~~v~L~~~~g~~~eAl~l~l 708 (936)
+-++.+.+++.-... ...++.. .+...+..|++.|++++|+.+.-
T Consensus 664 ~~eeA~~l~~eM~k~--------G~~pd~~--------tynsLI~ay~k~G~~eeA~~lf~ 708 (1060)
T PLN03218 664 DLDKAFEILQDARKQ--------GIKLGTV--------SYSSLMGACSNAKNWKKALELYE 708 (1060)
T ss_pred CHHHHHHHHHHHHHc--------CCCCCHH--------HHHHHHHHHHhCCCHHHHHHHHH
Confidence 444444444443100 1111110 12344556777777777776654
No 38
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=96.12 E-value=0.24 Score=54.98 Aligned_cols=113 Identities=9% Similarity=0.115 Sum_probs=74.8
Q ss_pred ccceeEEEeCCCCCeEEEEeecCCCccEEEEecCCC-CceeccC-CCCceEEEEEecCCCCCCCCcceEEEEcCCCcEEE
Q 002318 65 EQSIHKVFVDPGGSHCIATIVGSGGAETFYTHAKWS-KPRVLSK-LKGLVVNAVAWNRQQITEASTKEIILGTDTGQLHE 142 (936)
Q Consensus 65 ~~~i~~i~lDp~G~hlli~~~~~~~g~~~Y~~~~~~-k~k~L~k-lkg~~I~sVaw~~~~~~~~st~~iLiGt~~G~i~e 142 (936)
+++|+.+.+.|+|.+++..++ +|..-+...+.- ..-..+. -.++.++|.+|.|+. -=|-.||.+|.|=.
T Consensus 303 ~~~V~~ls~h~tgeYllsAs~---d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHpDg------Lifgtgt~d~~vki 373 (506)
T KOG0289|consen 303 EEPVTGLSLHPTGEYLLSASN---DGTWAFSDISSGSQLTVVSDETSDVEYTSAAFHPDG------LIFGTGTPDGVVKI 373 (506)
T ss_pred cccceeeeeccCCcEEEEecC---CceEEEEEccCCcEEEEEeeccccceeEEeeEcCCc------eEEeccCCCceEEE
Confidence 579999999999999999988 675544333222 1111221 245889999999542 24455678997766
Q ss_pred EEEecCCcccceeeEEeeeCCCCCceeeEEEEeeccCCCceEEEEEECCCeEEEEe
Q 002318 143 MAVDEKDKREKYIKLLFELNELPEAFMGLQMETASLSNGTRYYVMAVTPTRLYSFT 198 (936)
Q Consensus 143 ~~i~~~~~~~~~~k~v~~l~~~~~~I~gi~~~~~~~~~~~~~~i~ast~~rly~f~ 198 (936)
..+... ..+-.+|+-.+||+.|.|.. +..|++.++....+.-|+
T Consensus 374 wdlks~-------~~~a~Fpght~~vk~i~FsE-----NGY~Lat~add~~V~lwD 417 (506)
T KOG0289|consen 374 WDLKSQ-------TNVAKFPGHTGPVKAISFSE-----NGYWLATAADDGSVKLWD 417 (506)
T ss_pred EEcCCc-------cccccCCCCCCceeEEEecc-----CceEEEEEecCCeEEEEE
Confidence 666543 24556776568999999962 334666666566577675
No 39
>PLN03218 maturation of RBCL 1; Provisional
Probab=96.12 E-value=1.4 Score=56.97 Aligned_cols=266 Identities=8% Similarity=0.041 Sum_probs=141.1
Q ss_pred HHHHHHchhhHHHHHHhcCC-hhhHHHHHHHHHHHHHhcCCHHHHHHHHHHhc------CCCChHHHHHHhcCcChHHHH
Q 002318 367 MWKVYLDMKEYAAALANCRD-PLQRDQVYLVQAEAAFATKDFHRAASFYAKIN------YILSFEEITLKFISVSEQDAL 439 (936)
Q Consensus 367 ~W~~ll~~~~f~~Al~~~~~-~~~~~~I~~~~~~~L~~~g~y~~Aa~~y~~~~------~~~~~E~v~lkFl~~~~~~~L 439 (936)
.++.+.+.|.+++|+.+++. +.--......-...+...|++++|.+++.+.. +...|..++..+.+.++.+..
T Consensus 412 li~~~~~~g~~~eAl~lf~~M~~pd~~Tyn~LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A 491 (1060)
T PLN03218 412 FFKACKKQRAVKEAFRFAKLIRNPTLSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAM 491 (1060)
T ss_pred HHHHHHHCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHH
Confidence 34556677889999988753 11011222233444567899999999987764 123455666777777777766
Q ss_pred HHHHHHHhhc-ccCchhHHHHHHHHHHHHHHHHHHhhhhcccchhhccchHHHHHHHHHHHHHHhcccccCCH---HHHH
Q 002318 440 RTFLLRKLDN-LAKDDKCQITMISTWATELYLDKINRLLLEDDTALENRSSEYQSIMREFRAFLSDCKDVLDE---ATTM 515 (936)
Q Consensus 440 ~~YL~~~l~~-l~~~~~~~~~lL~~Wl~ely~~~l~~~~~e~~~~~~~~~~~~~~~~~~l~~fl~~~~~~ld~---~tv~ 515 (936)
...+....+. ...+..+...+| ..|... ..+ .+...-|+..... .-.-|. .+++
T Consensus 492 ~~vf~eM~~~Gv~PdvvTynaLI-----~gy~k~-G~~---------------eeAl~lf~~M~~~-Gv~PD~vTYnsLI 549 (1060)
T PLN03218 492 FEVFHEMVNAGVEANVHTFGALI-----DGCARA-GQV---------------AKAFGAYGIMRSK-NVKPDRVVFNALI 549 (1060)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHH-----HHHHHC-cCH---------------HHHHHHHHHHHHc-CCCCCHHHHHHHH
Confidence 6655543321 223333332332 222211 111 1111112221111 111122 2344
Q ss_pred HHHHHcCChhHHHHHHHhhh-----------hHHHHHHHHHhcccHHHHHHHHhCCCC----chhhHHh-hHHHHH-hHC
Q 002318 516 KLLESYGRVEELVFFASLKE-----------QHEIVVHHYIQQGEAKKALQMLRKPAV----PIDLQYK-FAPDLI-MLD 578 (936)
Q Consensus 516 ~ll~~~g~~e~~l~~a~~~~-----------dy~~ll~~yi~~~~~~~AL~~L~~~~d----~~~li~k-~~~~Ll-~~~ 578 (936)
..+...|..+++..+...+. -|..++..|...|++++|++++..+.. +....|. ....+. ...
T Consensus 550 ~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~ 629 (1060)
T PLN03218 550 SACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGD 629 (1060)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCC
Confidence 55566788888877655442 277788889999999999888865421 0011111 111111 245
Q ss_pred hHHHHHHHHcc--CCCCCCc-chhHhh-hcCCCCCCCCChHHHHHHHHHHHhhcCCCCHhHHHHHHHHhhcCCChHHHHH
Q 002318 579 AYETVESWMTT--NNLNPRK-LIPAMM-RYSSEPHAKNETHEVIKYLEFCVHRLHNEDPGVHNLLLSLYAKQEDDSALLR 654 (936)
Q Consensus 579 p~~ti~ll~~~--~~ld~~~-li~~L~-~~~~~~~~~~~~~~~~~YLe~li~~~~~~~~~~hn~ll~Ly~~~~~~~~Ll~ 654 (936)
.++++++|-+. ..+.|.. .+..|. .|... ...+.+..+++.+.......+...++.++..|++.++-++...
T Consensus 630 ~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~----G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~ 705 (1060)
T PLN03218 630 WDFALSIYDDMKKKGVKPDEVFFSALVDVAGHA----GDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALE 705 (1060)
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhC----CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHH
Confidence 56777777433 2444442 112222 12111 1345678888887766555677889999999988665444444
Q ss_pred HHHH
Q 002318 655 FLQC 658 (936)
Q Consensus 655 fL~~ 658 (936)
+++.
T Consensus 706 lf~e 709 (1060)
T PLN03218 706 LYED 709 (1060)
T ss_pred HHHH
Confidence 4443
No 40
>PLN03077 Protein ECB2; Provisional
Probab=96.11 E-value=3.2 Score=53.02 Aligned_cols=277 Identities=11% Similarity=0.067 Sum_probs=133.1
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHhc--CCCChHHHHHHhcCcChHHHHHHHHHH-HhhcccCchhHHHHHHHHHHHHHHHH
Q 002318 395 LVQAEAAFATKDFHRAASFYAKIN--YILSFEEITLKFISVSEQDALRTFLLR-KLDNLAKDDKCQITMISTWATELYLD 471 (936)
Q Consensus 395 ~~~~~~L~~~g~y~~Aa~~y~~~~--~~~~~E~v~lkFl~~~~~~~L~~YL~~-~l~~l~~~~~~~~~lL~~Wl~ely~~ 471 (936)
..-++.+...|++++|.+.|.+.. +...|..++.-|.+.++.+.-...+.. .-..+..+..+...+|..+ .
T Consensus 327 n~Li~~y~k~g~~~~A~~vf~~m~~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~-----~- 400 (857)
T PLN03077 327 NSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSAC-----A- 400 (857)
T ss_pred HHHHHHHHhcCCHHHHHHHHhhCCCCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHH-----h-
Confidence 344456667788888888777653 345677777777777765544444433 2233344444433333221 0
Q ss_pred HHhhhhcccchhhccchHHHHHHHHHHHHHHhcccccCC---HHHHHHHHHHcCChhHHHHHHHhhhh-----HHHHHHH
Q 002318 472 KINRLLLEDDTALENRSSEYQSIMREFRAFLSDCKDVLD---EATTMKLLESYGRVEELVFFASLKEQ-----HEIVVHH 543 (936)
Q Consensus 472 ~l~~~~~e~~~~~~~~~~~~~~~~~~l~~fl~~~~~~ld---~~tv~~ll~~~g~~e~~l~~a~~~~d-----y~~ll~~ 543 (936)
+...+ ... .++...+.+..-..+ -.++++.+...|+.+++..+.+.+.+ |..++.-
T Consensus 401 ~~g~~---------------~~a-~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~vs~~~mi~~ 464 (857)
T PLN03077 401 CLGDL---------------DVG-VKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPEKDVISWTSIIAG 464 (857)
T ss_pred ccchH---------------HHH-HHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCeeeHHHHHHH
Confidence 11111 000 111111111111111 22345566677888888777665533 7778888
Q ss_pred HHhcccHHHHHHHHhCCCC-chhhHHhhHHHHHh----HChHHHHH---HHHccCCCCCCc-----chhHhhhcCCCCCC
Q 002318 544 YIQQGEAKKALQMLRKPAV-PIDLQYKFAPDLIM----LDAYETVE---SWMTTNNLNPRK-----LIPAMMRYSSEPHA 610 (936)
Q Consensus 544 yi~~~~~~~AL~~L~~~~d-~~~li~k~~~~Ll~----~~p~~ti~---ll~~~~~ld~~~-----li~~L~~~~~~~~~ 610 (936)
|.+.|++++|++++.+... ...-...|...|-. -..+...+ ..++. .+.++. |+..+.+..
T Consensus 465 ~~~~g~~~eA~~lf~~m~~~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~-g~~~~~~~~naLi~~y~k~G----- 538 (857)
T PLN03077 465 LRLNNRCFEALIFFRQMLLTLKPNSVTLIAALSACARIGALMCGKEIHAHVLRT-GIGFDGFLPNALLDLYVRCG----- 538 (857)
T ss_pred HHHCCCHHHHHHHHHHHHhCCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHh-CCCccceechHHHHHHHHcC-----
Confidence 8888888888887765311 00000111111110 01111111 11221 222222 222222211
Q ss_pred CCChHHHHHHHHHHHhhcCCCCHhHHHHHHHHhhcCCChHHHHHHHHHhhCCCCCCCCcccC-------------ChHHH
Q 002318 611 KNETHEVIKYLEFCVHRLHNEDPGVHNLLLSLYAKQEDDSALLRFLQCKFGKGRENGPEFFY-------------DPKYA 677 (936)
Q Consensus 611 ~~~~~~~~~YLe~li~~~~~~~~~~hn~ll~Ly~~~~~~~~Ll~fL~~~~~~~~~~~~~~~y-------------d~~~a 677 (936)
.-+.+...++.+ ..+...+|.++..|++.+..++.+..++.-...+.. | ... +++.|
T Consensus 539 --~~~~A~~~f~~~-----~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~--P-d~~T~~~ll~a~~~~g~v~ea 608 (857)
T PLN03077 539 --RMNYAWNQFNSH-----EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVN--P-DEVTFISLLCACSRSGMVTQG 608 (857)
T ss_pred --CHHHHHHHHHhc-----CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC--C-CcccHHHHHHHHhhcChHHHH
Confidence 223344433332 356778999999998876555555555542111110 1 111 23444
Q ss_pred HHHHH----hcC------cceeeehhhhccccHHHHHHHHHh
Q 002318 678 LRLCL----KEK------RMRACVHIYGMMSMHEEAVALALQ 709 (936)
Q Consensus 678 Lrlc~----~~~------~~~~~v~L~~~~g~~~eAl~l~l~ 709 (936)
+++.. +++ .+..+|.+|++.|+.++|.+++-+
T Consensus 609 ~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~ 650 (857)
T PLN03077 609 LEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINK 650 (857)
T ss_pred HHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 44332 222 234567788888888888888755
No 41
>PF13923 zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger); PDB: 3HCU_A 2ECI_A 2JMD_A 3HCS_B 3HCT_A 3ZTG_A 2YUR_A 3L11_A.
Probab=95.97 E-value=0.0025 Score=47.02 Aligned_cols=22 Identities=36% Similarity=0.905 Sum_probs=19.9
Q ss_pred CEEEEcCCChhHHHhHHHHHhh
Q 002318 864 PFYVFPCGHAFHAQCLIAHVTQ 885 (936)
Q Consensus 864 ~fvvFpCgH~fH~~CL~~~~~~ 885 (936)
++++.+|||.|+.+|+.+.+..
T Consensus 11 ~~~~~~CGH~fC~~C~~~~~~~ 32 (39)
T PF13923_consen 11 PVVVTPCGHSFCKECIEKYLEK 32 (39)
T ss_dssp EEEECTTSEEEEHHHHHHHHHC
T ss_pred cCEECCCCCchhHHHHHHHHHC
Confidence 7899999999999999988765
No 42
>PF12678 zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This domain constitutes a conserved region found in proteins that participate in diverse functions relevant to chromosome metabolism and cell cycle control [].The domain contains 8 cysteine/ histidine residues which are proposed to be the conserved residues involved in zinc binding.; PDB: 4A0C_D 4A0L_I 4A0K_B 2ECL_A 1LDK_C 3RTR_F 3DQV_Y 1U6G_B 1LDJ_B 2HYE_D ....
Probab=95.92 E-value=0.0038 Score=53.15 Aligned_cols=48 Identities=27% Similarity=0.638 Sum_probs=31.7
Q ss_pred cccccccchhhhhcccccccccccCCCCCCCCEEEEcCCChhHHHhHHHHHhhc
Q 002318 833 DEDCGVCRRKILVAGRDYRMARGYASVGPMAPFYVFPCGHAFHAQCLIAHVTQC 886 (936)
Q Consensus 833 ~~~C~~C~k~L~~~~~~~~~~~~~~~~~~~~~fvvFpCgH~fH~~CL~~~~~~~ 886 (936)
.+.|++|..++.....+-. ..+...+++.-+|||.||..|+.+.+...
T Consensus 19 ~d~C~IC~~~l~~~~~~~~------~~~~~~~i~~~~C~H~FH~~Ci~~Wl~~~ 66 (73)
T PF12678_consen 19 DDNCAICREPLEDPCPECQ------APQDECPIVWGPCGHIFHFHCISQWLKQN 66 (73)
T ss_dssp CSBETTTTSBTTSTTCCHH------HCTTTS-EEEETTSEEEEHHHHHHHHTTS
T ss_pred CCcccccChhhhChhhhhc------CCccccceEecccCCCEEHHHHHHHHhcC
Confidence 4569999999955322110 01122467777899999999999877543
No 43
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=95.88 E-value=0.2 Score=55.99 Aligned_cols=71 Identities=18% Similarity=0.112 Sum_probs=53.0
Q ss_pred hhcCCCceeEEEEeCC--EEEEEecCCeEEEEeC-CCCCceeeEcCCCCCCccceeEEEeCCCCCeEEEEeecCCCccEE
Q 002318 17 AAKGRGVITCMSAGND--VIVLGTSKGWLIRHDF-GAGDSYDIDLSAGRPGEQSIHKVFVDPGGSHCIATIVGSGGAETF 93 (936)
Q Consensus 17 ~~~~~~~i~~l~v~~n--~l~l~~~~g~l~ridl-~~~~~~~~~l~~~~~~~~~i~~i~lDp~G~hlli~~~~~~~g~~~ 93 (936)
...-|+.++|++..|+ +++.|+..|.||.|-+ .+.-..-+.-| =..|+.+-+.-.|.|+|..++ ||.++
T Consensus 77 ~~v~Pg~v~al~s~n~G~~l~ag~i~g~lYlWelssG~LL~v~~aH-----YQ~ITcL~fs~dgs~iiTgsk---Dg~V~ 148 (476)
T KOG0646|consen 77 YIVLPGPVHALASSNLGYFLLAGTISGNLYLWELSSGILLNVLSAH-----YQSITCLKFSDDGSHIITGSK---DGAVL 148 (476)
T ss_pred hcccccceeeeecCCCceEEEeecccCcEEEEEeccccHHHHHHhh-----ccceeEEEEeCCCcEEEecCC---CccEE
Confidence 3445678999999886 7788889999999999 55443333222 256888888888999988888 88886
Q ss_pred EE
Q 002318 94 YT 95 (936)
Q Consensus 94 Y~ 95 (936)
-+
T Consensus 149 vW 150 (476)
T KOG0646|consen 149 VW 150 (476)
T ss_pred EE
Confidence 54
No 44
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=95.80 E-value=0.44 Score=49.07 Aligned_cols=132 Identities=19% Similarity=0.213 Sum_probs=80.3
Q ss_pred CeEEEEeCCCCCceeeEcCCCCCCccceeEEEeCCCCCeEEEEeecCCCccEEEEecCCCCceeccCCCCceEEEEEecC
Q 002318 41 GWLIRHDFGAGDSYDIDLSAGRPGEQSIHKVFVDPGGSHCIATIVGSGGAETFYTHAKWSKPRVLSKLKGLVVNAVAWNR 120 (936)
Q Consensus 41 g~l~ridl~~~~~~~~~l~~~~~~~~~i~~i~lDp~G~hlli~~~~~~~g~~~Y~~~~~~k~k~L~klkg~~I~sVaw~~ 120 (936)
..|+++|.....+..+++.. .++|+.+--.|+|..++|++... .+..-..+.+ .+.+..+....+.+|.|+|
T Consensus 39 ~~l~~~~~~~~~~~~i~l~~----~~~I~~~~WsP~g~~favi~g~~-~~~v~lyd~~---~~~i~~~~~~~~n~i~wsP 110 (194)
T PF08662_consen 39 FELFYLNEKNIPVESIELKK----EGPIHDVAWSPNGNEFAVIYGSM-PAKVTLYDVK---GKKIFSFGTQPRNTISWSP 110 (194)
T ss_pred EEEEEEecCCCccceeeccC----CCceEEEEECcCCCEEEEEEccC-CcccEEEcCc---ccEeEeecCCCceEEEECC
Confidence 46888888434456666653 34699999999999988876411 2333333333 3444445556788999994
Q ss_pred CCCCCCCcceEEEEcC---CCcEEEEEEecCCcccceeeEEeeeCCCCCceeeEEEEeeccCCCceEEEEEECC------
Q 002318 121 QQITEASTKEIILGTD---TGQLHEMAVDEKDKREKYIKLLFELNELPEAFMGLQMETASLSNGTRYYVMAVTP------ 191 (936)
Q Consensus 121 ~~~~~~st~~iLiGt~---~G~i~e~~i~~~~~~~~~~k~v~~l~~~~~~I~gi~~~~~~~~~~~~~~i~ast~------ 191 (936)
. .+-+++|+. .|.|....+.. .+.+.+... .-++.+.|.. +.++++.++|.
T Consensus 111 ~------G~~l~~~g~~n~~G~l~~wd~~~-------~~~i~~~~~--~~~t~~~WsP-----dGr~~~ta~t~~r~~~d 170 (194)
T PF08662_consen 111 D------GRFLVLAGFGNLNGDLEFWDVRK-------KKKISTFEH--SDATDVEWSP-----DGRYLATATTSPRLRVD 170 (194)
T ss_pred C------CCEEEEEEccCCCcEEEEEECCC-------CEEeecccc--CcEEEEEEcC-----CCCEEEEEEeccceecc
Confidence 3 236666643 46666654432 344433332 3378888873 34778777662
Q ss_pred --CeEEEEecC
Q 002318 192 --TRLYSFTGF 200 (936)
Q Consensus 192 --~rly~f~~~ 200 (936)
-+|+.|.|.
T Consensus 171 ng~~Iw~~~G~ 181 (194)
T PF08662_consen 171 NGFKIWSFQGR 181 (194)
T ss_pred ccEEEEEecCe
Confidence 267777664
No 45
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=95.73 E-value=0.21 Score=55.60 Aligned_cols=142 Identities=15% Similarity=0.183 Sum_probs=88.1
Q ss_pred EeCCEEEEEecCCeEEEEeC-CCCCceeeEcCCCCCCccceeEEEeCCCCCeEEEE-eecCCCccEE-EEecCCC-Ccee
Q 002318 29 AGNDVIVLGTSKGWLIRHDF-GAGDSYDIDLSAGRPGEQSIHKVFVDPGGSHCIAT-IVGSGGAETF-YTHAKWS-KPRV 104 (936)
Q Consensus 29 v~~n~l~l~~~~g~l~ridl-~~~~~~~~~l~~~~~~~~~i~~i~lDp~G~hlli~-~~~~~~g~~~-Y~~~~~~-k~k~ 104 (936)
--.|+|+=|-...+|..||+ .+.-...+.-+ ..+|..+-..|..--.+++ +- +|.+- +=++... -.+.
T Consensus 254 ~~~nVLaSgsaD~TV~lWD~~~g~p~~s~~~~-----~k~Vq~l~wh~~~p~~LLsGs~---D~~V~l~D~R~~~~s~~~ 325 (463)
T KOG0270|consen 254 NFRNVLASGSADKTVKLWDVDTGKPKSSITHH-----GKKVQTLEWHPYEPSVLLSGSY---DGTVALKDCRDPSNSGKE 325 (463)
T ss_pred ccceeEEecCCCceEEEEEcCCCCcceehhhc-----CCceeEEEecCCCceEEEeccc---cceEEeeeccCccccCce
Confidence 34568888899999999999 44433333322 3678888888875555554 33 45443 2223111 1111
Q ss_pred ccCCCCceEEEEEecCCCCCCCCcceEEEEcCCCcEEEEEEecCCcccceeeEEeee--CCCCCceeeEEEEeeccCCCc
Q 002318 105 LSKLKGLVVNAVAWNRQQITEASTKEIILGTDTGQLHEMAVDEKDKREKYIKLLFEL--NELPEAFMGLQMETASLSNGT 182 (936)
Q Consensus 105 L~klkg~~I~sVaw~~~~~~~~st~~iLiGt~~G~i~e~~i~~~~~~~~~~k~v~~l--~~~~~~I~gi~~~~~~~~~~~ 182 (936)
- |+ .-.|+.|+|++. +...|++||.+|.+|.+.+...+ +.++++ .+ ++|.||.+.. ...
T Consensus 326 w-k~-~g~VEkv~w~~~-----se~~f~~~tddG~v~~~D~R~~~------~~vwt~~AHd--~~ISgl~~n~----~~p 386 (463)
T KOG0270|consen 326 W-KF-DGEVEKVAWDPH-----SENSFFVSTDDGTVYYFDIRNPG------KPVWTLKAHD--DEISGLSVNI----QTP 386 (463)
T ss_pred E-Ee-ccceEEEEecCC-----CceeEEEecCCceEEeeecCCCC------CceeEEEecc--CCcceEEecC----CCC
Confidence 1 12 238999999954 45689999999999998775431 444444 44 6799999974 334
Q ss_pred eEEEEEECCCeEEEE
Q 002318 183 RYYVMAVTPTRLYSF 197 (936)
Q Consensus 183 ~~~i~ast~~rly~f 197 (936)
+++..++|..-+--|
T Consensus 387 ~~l~t~s~d~~Vklw 401 (463)
T KOG0270|consen 387 GLLSTASTDKVVKLW 401 (463)
T ss_pred cceeeccccceEEEE
Confidence 566666664444433
No 46
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=95.68 E-value=0.026 Score=52.00 Aligned_cols=50 Identities=18% Similarity=0.132 Sum_probs=34.1
Q ss_pred HHHHHHHhcccccCCHHHHHHHHHHcCChhHHHHHHHhhhhHHHHHHHHHh
Q 002318 496 REFRAFLSDCKDVLDEATTMKLLESYGRVEELVFFASLKEQHEIVVHHYIQ 546 (936)
Q Consensus 496 ~~l~~fl~~~~~~ld~~tv~~ll~~~g~~e~~l~~a~~~~dy~~ll~~yi~ 546 (936)
..+..|++.. +.+|.+.+.+.|.++|++.+++.|....|.|+..++++..
T Consensus 15 ~~l~~llr~~-N~C~~~~~e~~L~~~~~~~eL~~lY~~kg~h~~AL~ll~~ 64 (108)
T PF10366_consen 15 SLLGPLLRLP-NYCDLEEVEEVLKEHGKYQELVDLYQGKGLHRKALELLKK 64 (108)
T ss_pred HHHHHHHccC-CcCCHHHHHHHHHHcCCHHHHHHHHHccCccHHHHHHHHH
Confidence 4566788765 6678999888998888877766655555555555544443
No 47
>PLN00181 protein SPA1-RELATED; Provisional
Probab=95.67 E-value=0.46 Score=60.10 Aligned_cols=150 Identities=7% Similarity=0.019 Sum_probs=99.9
Q ss_pred CceeEEEEe---CCEEEEEecCCeEEEEeC-CCCCceeeEcCCCCCCccceeEEEeCC-CCCeEEEEeecCCCccEEEEe
Q 002318 22 GVITCMSAG---NDVIVLGTSKGWLIRHDF-GAGDSYDIDLSAGRPGEQSIHKVFVDP-GGSHCIATIVGSGGAETFYTH 96 (936)
Q Consensus 22 ~~i~~l~v~---~n~l~l~~~~g~l~ridl-~~~~~~~~~l~~~~~~~~~i~~i~lDp-~G~hlli~~~~~~~g~~~Y~~ 96 (936)
..+++++.+ ++.++.|..+|+|..||+ ....+..+.-+ ...|..+-.+| .|..++.++. +|....++
T Consensus 533 ~~v~~l~~~~~~~~~las~~~Dg~v~lWd~~~~~~~~~~~~H-----~~~V~~l~~~p~~~~~L~Sgs~---Dg~v~iWd 604 (793)
T PLN00181 533 SKLSGICWNSYIKSQVASSNFEGVVQVWDVARSQLVTEMKEH-----EKRVWSIDYSSADPTLLASGSD---DGSVKLWS 604 (793)
T ss_pred CceeeEEeccCCCCEEEEEeCCCeEEEEECCCCeEEEEecCC-----CCCEEEEEEcCCCCCEEEEEcC---CCEEEEEE
Confidence 457778775 468888899999999999 55444444433 36799999987 5777777776 89888887
Q ss_pred cCCCC-ceeccCCCCceEEEEEecCCCCCCCCcceEEEEcCCCcEEEEEEecCCcccceeeEEeeeCCCCCceeeEEEEe
Q 002318 97 AKWSK-PRVLSKLKGLVVNAVAWNRQQITEASTKEIILGTDTGQLHEMAVDEKDKREKYIKLLFELNELPEAFMGLQMET 175 (936)
Q Consensus 97 ~~~~k-~k~L~klkg~~I~sVaw~~~~~~~~st~~iLiGt~~G~i~e~~i~~~~~~~~~~k~v~~l~~~~~~I~gi~~~~ 175 (936)
....+ ...+. . ...|.+++|.++ +...++.|+.+|.|+...+.... . .+..+..-..+|+.+.|..
T Consensus 605 ~~~~~~~~~~~-~-~~~v~~v~~~~~-----~g~~latgs~dg~I~iwD~~~~~---~---~~~~~~~h~~~V~~v~f~~ 671 (793)
T PLN00181 605 INQGVSIGTIK-T-KANICCVQFPSE-----SGRSLAFGSADHKVYYYDLRNPK---L---PLCTMIGHSKTVSYVRFVD 671 (793)
T ss_pred CCCCcEEEEEe-c-CCCeEEEEEeCC-----CCCEEEEEeCCCeEEEEECCCCC---c---cceEecCCCCCEEEEEEeC
Confidence 65433 22232 1 247899999743 23478889999999988765321 1 1122222235799998851
Q ss_pred eccCCCceEEEEEECCCeEEEEe
Q 002318 176 ASLSNGTRYYVMAVTPTRLYSFT 198 (936)
Q Consensus 176 ~~~~~~~~~~i~ast~~rly~f~ 198 (936)
+ ..++.+++...+.-|.
T Consensus 672 ----~--~~lvs~s~D~~ikiWd 688 (793)
T PLN00181 672 ----S--STLVSSSTDNTLKLWD 688 (793)
T ss_pred ----C--CEEEEEECCCEEEEEe
Confidence 2 4666667777677675
No 48
>cd00162 RING RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H)
Probab=95.64 E-value=0.0094 Score=44.86 Aligned_cols=33 Identities=27% Similarity=0.832 Sum_probs=26.0
Q ss_pred cccccchhhhhcccccccccccCCCCCCCCEEEEcCCChhHHHhHHHHHhh
Q 002318 835 DCGVCRRKILVAGRDYRMARGYASVGPMAPFYVFPCGHAFHAQCLIAHVTQ 885 (936)
Q Consensus 835 ~C~~C~k~L~~~~~~~~~~~~~~~~~~~~~fvvFpCgH~fH~~CL~~~~~~ 885 (936)
.|.+|...+.. ++.+.+|||.||..|+......
T Consensus 1 ~C~iC~~~~~~------------------~~~~~~C~H~~c~~C~~~~~~~ 33 (45)
T cd00162 1 ECPICLEEFRE------------------PVVLLPCGHVFCRSCIDKWLKS 33 (45)
T ss_pred CCCcCchhhhC------------------ceEecCCCChhcHHHHHHHHHh
Confidence 48889888733 6667779999999999987654
No 49
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=95.58 E-value=2.7 Score=51.46 Aligned_cols=135 Identities=14% Similarity=0.118 Sum_probs=72.0
Q ss_pred HHcCChhHHHHHHHhh--------hhHHHHHHHHHhcccHHHHHHHHhCC----CCchhhHHhhHHHHHh-HChHHHHHH
Q 002318 519 ESYGRVEELVFFASLK--------EQHEIVVHHYIQQGEAKKALQMLRKP----AVPIDLQYKFAPDLIM-LDAYETVES 585 (936)
Q Consensus 519 ~~~g~~e~~l~~a~~~--------~dy~~ll~~yi~~~~~~~AL~~L~~~----~d~~~li~k~~~~Ll~-~~p~~ti~l 585 (936)
...|+.++++...+.. ..|-.+...|...|+|++|+..+.+. ++..+.++..+..++. .+.++++..
T Consensus 342 ~~~g~~~eA~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~ 421 (615)
T TIGR00990 342 CLKGKHLEALADLSKSIELDPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKD 421 (615)
T ss_pred HHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 3467777776665542 23344556677778888888776532 2223455544444432 455566666
Q ss_pred HHccCCCCCCcchhHhh---hcCCCCCCCCChHHHHHHHHHHHhhcCCCCHhHHHHHHHHhhcCCChHHHHHHHHH
Q 002318 586 WMTTNNLNPRKLIPAMM---RYSSEPHAKNETHEVIKYLEFCVHRLHNEDPGVHNLLLSLYAKQEDDSALLRFLQC 658 (936)
Q Consensus 586 l~~~~~ld~~~li~~L~---~~~~~~~~~~~~~~~~~YLe~li~~~~~~~~~~hn~ll~Ly~~~~~~~~Ll~fL~~ 658 (936)
+.+.-.++|......+. -+.. ......++.+++.++...+ .++.+++.+-.+|...++.++.+..++.
T Consensus 422 ~~kal~l~P~~~~~~~~la~~~~~----~g~~~eA~~~~~~al~~~P-~~~~~~~~lg~~~~~~g~~~~A~~~~~~ 492 (615)
T TIGR00990 422 YQKSIDLDPDFIFSHIQLGVTQYK----EGSIASSMATFRRCKKNFP-EAPDVYNYYGELLLDQNKFDEAIEKFDT 492 (615)
T ss_pred HHHHHHcCccCHHHHHHHHHHHHH----CCCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 64443455554322110 0000 0134557777777765543 3466677777777665544444444444
No 50
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=95.57 E-value=0.38 Score=57.48 Aligned_cols=131 Identities=16% Similarity=0.242 Sum_probs=83.8
Q ss_pred CCCceeEEEEeCCEEEEEecCCeEEEEeCCCCCceeeEcCCCCCCccceeEEEeCCCCCeEEEEeecCCCccEEEEecCC
Q 002318 20 GRGVITCMSAGNDVIVLGTSKGWLIRHDFGAGDSYDIDLSAGRPGEQSIHKVFVDPGGSHCIATIVGSGGAETFYTHAKW 99 (936)
Q Consensus 20 ~~~~i~~l~v~~n~l~l~~~~g~l~ridl~~~~~~~~~l~~~~~~~~~i~~i~lDp~G~hlli~~~~~~~g~~~Y~~~~~ 99 (936)
=++.|+|++.....++.|..+ .|+.+-- +..+..+-.+. ..+|+ ++.|.|+|++.+.. ++-.|.++...
T Consensus 75 lp~~I~alas~~~~vy~A~g~-~i~~~~r-gk~i~~~~~~~----~a~v~--~l~~fGe~lia~d~---~~~l~vw~~s~ 143 (910)
T KOG1539|consen 75 LPDKITALASDKDYVYVASGN-KIYAYAR-GKHIRHTTLLH----GAKVH--LLLPFGEHLIAVDI---SNILFVWKTSS 143 (910)
T ss_pred CCCceEEEEecCceEEEecCc-EEEEEEc-cceEEEEeccc----cceEE--EEeeecceEEEEEc---cCcEEEEEecc
Confidence 357899999999999988877 4554433 11122222221 13444 35789999999998 78888777655
Q ss_pred CCc-----eeccCCCCceEEEEEecCCCCCCCCcceEEEEcCCCcEEEEEEecCCcccceeeEEeeeCCCCCceeeEEE
Q 002318 100 SKP-----RVLSKLKGLVVNAVAWNRQQITEASTKEIILGTDTGQLHEMAVDEKDKREKYIKLLFELNELPEAFMGLQM 173 (936)
Q Consensus 100 ~k~-----k~L~klkg~~I~sVaw~~~~~~~~st~~iLiGt~~G~i~e~~i~~~~~~~~~~k~v~~l~~~~~~I~gi~~ 173 (936)
.+. -.+.+..|-.|+++.=.+.+. ..|++|.++|.+-..++..+ |.||++++-+..||.|+-
T Consensus 144 ~~~e~~l~~~~~~~~~~~Ital~HP~TYL-----NKIvvGs~~G~lql~Nvrt~-------K~v~~f~~~~s~IT~ieq 210 (910)
T KOG1539|consen 144 IQEELYLQSTFLKVEGDFITALLHPSTYL-----NKIVVGSSQGRLQLWNVRTG-------KVVYTFQEFFSRITAIEQ 210 (910)
T ss_pred ccccccccceeeeccCCceeeEecchhhe-----eeEEEeecCCcEEEEEeccC-------cEEEEecccccceeEecc
Confidence 211 123334455688876542222 38999999999999888765 667777653344555543
No 51
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=95.55 E-value=1.1 Score=56.79 Aligned_cols=80 Identities=21% Similarity=0.265 Sum_probs=49.4
Q ss_pred HHHHchhhHHHHHHhcCCh----hhHHHHHHHHHHHHHhcCCHHHHHHHHHHhcC-----CCChHHHHHHhcCcChHHHH
Q 002318 369 KVYLDMKEYAAALANCRDP----LQRDQVYLVQAEAAFATKDFHRAASFYAKINY-----ILSFEEITLKFISVSEQDAL 439 (936)
Q Consensus 369 ~~ll~~~~f~~Al~~~~~~----~~~~~I~~~~~~~L~~~g~y~~Aa~~y~~~~~-----~~~~E~v~lkFl~~~~~~~L 439 (936)
..|.+.|++++|+++.+.- ..-..+....|.-+...|+|++|...|.+... ...+.....-+...++.+.-
T Consensus 575 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 654 (899)
T TIGR02917 575 QYYLGKGQLKKALAILNEAADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPDSALALLLLADAYAVMKNYAKA 654 (899)
T ss_pred HHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHH
Confidence 3477889999998887531 12235667778888888999999888877541 11233334444455555554
Q ss_pred HHHHHHHhh
Q 002318 440 RTFLLRKLD 448 (936)
Q Consensus 440 ~~YL~~~l~ 448 (936)
..++.+-+.
T Consensus 655 ~~~~~~~~~ 663 (899)
T TIGR02917 655 ITSLKRALE 663 (899)
T ss_pred HHHHHHHHh
Confidence 455554443
No 52
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=95.52 E-value=2.1 Score=52.81 Aligned_cols=269 Identities=9% Similarity=0.008 Sum_probs=138.2
Q ss_pred hhHHHHHHchhhHHHHHHhcCC-----hhhHHHHHHHHHHHHHhcCCHHHHHHHHHHhcC-----CCChHHHHHHhcCcC
Q 002318 365 RDMWKVYLDMKEYAAALANCRD-----PLQRDQVYLVQAEAAFATKDFHRAASFYAKINY-----ILSFEEITLKFISVS 434 (936)
Q Consensus 365 ~~~W~~ll~~~~f~~Al~~~~~-----~~~~~~I~~~~~~~L~~~g~y~~Aa~~y~~~~~-----~~~~E~v~lkFl~~~ 434 (936)
+.+-.-++..|++++|+.+++. |.. ...+...|--++..|++++|...|.+... ...+-.....+...+
T Consensus 46 ~~~~~~~~~~g~~~~A~~l~~~~l~~~p~~-~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P~~~~a~~~la~~l~~~g 124 (656)
T PRK15174 46 ILFAIACLRKDETDVGLTLLSDRVLTAKNG-RDLLRRWVISPLASSQPDAVLQVVNKLLAVNVCQPEDVLLVASVLLKSK 124 (656)
T ss_pred HHHHHHHHhcCCcchhHHHhHHHHHhCCCc-hhHHHHHhhhHhhcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcC
Confidence 4555668888999999999763 333 33444455566679999999999988751 112333344445566
Q ss_pred hHHHHHHHHHHHhhcccCchhHHHHHHHHHHHHHHHHHHhhhhcccchhhccchHHHHHHHHHHHHHHhcccccCCHHHH
Q 002318 435 EQDALRTFLLRKLDNLAKDDKCQITMISTWATELYLDKINRLLLEDDTALENRSSEYQSIMREFRAFLSDCKDVLDEATT 514 (936)
Q Consensus 435 ~~~~L~~YL~~~l~~l~~~~~~~~~lL~~Wl~ely~~~l~~~~~e~~~~~~~~~~~~~~~~~~l~~fl~~~~~~ld~~tv 514 (936)
+.+.-...+..-+..-+.+... ...+..+|.. ..+ ..+....+++.+....+ +....
T Consensus 125 ~~~~Ai~~l~~Al~l~P~~~~a-----~~~la~~l~~-~g~---------------~~eA~~~~~~~~~~~P~--~~~a~ 181 (656)
T PRK15174 125 QYATVADLAEQAWLAFSGNSQI-----FALHLRTLVL-MDK---------------ELQAISLARTQAQEVPP--RGDMI 181 (656)
T ss_pred CHHHHHHHHHHHHHhCCCcHHH-----HHHHHHHHHH-CCC---------------hHHHHHHHHHHHHhCCC--CHHHH
Confidence 6655555555544432222211 1112223221 111 11112222333222111 11110
Q ss_pred --HHHHHHcCChhHHHHHHHhhhh------H---HHHHHHHHhcccHHHHHHHHhCC----CCchhhHHhhHHHHHhH-C
Q 002318 515 --MKLLESYGRVEELVFFASLKEQ------H---EIVVHHYIQQGEAKKALQMLRKP----AVPIDLQYKFAPDLIML-D 578 (936)
Q Consensus 515 --~~ll~~~g~~e~~l~~a~~~~d------y---~~ll~~yi~~~~~~~AL~~L~~~----~d~~~li~k~~~~Ll~~-~ 578 (936)
.-.+...|+.++++..++..-. . ..+...+...|++++|+..+.+. ++.....+..+..+... .
T Consensus 182 ~~~~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~~~~~~~~Lg~~l~~~G~ 261 (656)
T PRK15174 182 ATCLSFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGLDGAALRRSLGLAYYQSGR 261 (656)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCC
Confidence 1124456888888776654211 0 12345677889999999887642 33345555566655542 2
Q ss_pred hH----HHHHHHHccCCCCCCcchhHhhhcCCCCCCCCChHHHHHHHHHHHhhcCCCCHhHHHHHHHHhhcCCChHHHHH
Q 002318 579 AY----ETVESWMTTNNLNPRKLIPAMMRYSSEPHAKNETHEVIKYLEFCVHRLHNEDPGVHNLLLSLYAKQEDDSALLR 654 (936)
Q Consensus 579 p~----~ti~ll~~~~~ld~~~li~~L~~~~~~~~~~~~~~~~~~YLe~li~~~~~~~~~~hn~ll~Ly~~~~~~~~Ll~ 654 (936)
.. +++..+-+.-.++|... .....+-...........++.+++..+...+ .++.++..+...|...++.++.+.
T Consensus 262 ~~eA~~~A~~~~~~Al~l~P~~~-~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P-~~~~a~~~La~~l~~~G~~~eA~~ 339 (656)
T PRK15174 262 SREAKLQAAEHWRHALQFNSDNV-RIVTLYADALIRTGQNEKAIPLLQQSLATHP-DLPYVRAMYARALRQVGQYTAASD 339 (656)
T ss_pred chhhHHHHHHHHHHHHhhCCCCH-HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCCHHHHHH
Confidence 22 25555544334556532 1111110000001234678888888876654 356677777777777655555555
Q ss_pred HHHHh
Q 002318 655 FLQCK 659 (936)
Q Consensus 655 fL~~~ 659 (936)
.++..
T Consensus 340 ~l~~a 344 (656)
T PRK15174 340 EFVQL 344 (656)
T ss_pred HHHHH
Confidence 55443
No 53
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=95.48 E-value=0.15 Score=55.42 Aligned_cols=56 Identities=25% Similarity=0.516 Sum_probs=37.9
Q ss_pred cccccccchhhhhcccccccccccCCCCCCCCEEEEcCCChhHHHhHHHHHhhcCCccchHHHHHHHhhhc
Q 002318 833 DEDCGVCRRKILVAGRDYRMARGYASVGPMAPFYVFPCGHAFHAQCLIAHVTQCTNETQVSVVDIVLSYKR 903 (936)
Q Consensus 833 ~~~C~~C~k~L~~~~~~~~~~~~~~~~~~~~~fvvFpCgH~fH~~CL~~~~~~~~~~~~~~~~~~~~~~~~ 903 (936)
+--|..||+.+.. + +..+=..||.|.||.+|+...+.+..+-+=-.--++..++++
T Consensus 365 ~L~Cg~CGe~~Gl-----k----------~e~LqALpCsHIfH~rCl~e~L~~n~~rsCP~CrklrSs~~r 420 (518)
T KOG1941|consen 365 ELYCGLCGESIGL-----K----------NERLQALPCSHIFHLRCLQEILENNGTRSCPNCRKLRSSMKR 420 (518)
T ss_pred hhhhhhhhhhhcC-----C----------cccccccchhHHHHHHHHHHHHHhCCCCCCccHHHHHhhccC
Confidence 3469999999988 4 225678899999999999987754443221112245555554
No 54
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=95.47 E-value=0.28 Score=50.35 Aligned_cols=162 Identities=12% Similarity=0.134 Sum_probs=101.7
Q ss_pred hHHHHHhhcCCCceeEEEEeCCEEEEEecCCeEEEEeC-CCCCceeeEcCCCCCCccceeEEEeCCCCCeEEEEeecCCC
Q 002318 11 DVLERYAAKGRGVITCMSAGNDVIVLGTSKGWLIRHDF-GAGDSYDIDLSAGRPGEQSIHKVFVDPGGSHCIATIVGSGG 89 (936)
Q Consensus 11 ~~~~~~~~~~~~~i~~l~v~~n~l~l~~~~g~l~ridl-~~~~~~~~~l~~~~~~~~~i~~i~lDp~G~hlli~~~~~~~ 89 (936)
+|++- +..+.|.|+++.|+...++-|...|++-++|+ .+....++- ..+|+.+.+.|.|.-.++++- +
T Consensus 136 ePiQi-ldea~D~V~Si~v~~heIvaGS~DGtvRtydiR~G~l~sDy~-------g~pit~vs~s~d~nc~La~~l---~ 204 (307)
T KOG0316|consen 136 EPIQI-LDEAKDGVSSIDVAEHEIVAGSVDGTVRTYDIRKGTLSSDYF-------GHPITSVSFSKDGNCSLASSL---D 204 (307)
T ss_pred Cccch-hhhhcCceeEEEecccEEEeeccCCcEEEEEeecceeehhhc-------CCcceeEEecCCCCEEEEeec---c
Confidence 34443 35677889999999999999999999999999 444332221 257999999999999988887 5
Q ss_pred ccEEEEecCCCCceeccCCCCceEEEEEecCCCCCCCCcceEEEEcCCCcEEEEEEecCCcccceeeEEeeeCCCCCc-e
Q 002318 90 AETFYTHAKWSKPRVLSKLKGLVVNAVAWNRQQITEASTKEIILGTDTGQLHEMAVDEKDKREKYIKLLFELNELPEA-F 168 (936)
Q Consensus 90 g~~~Y~~~~~~k~k~L~klkg~~I~sVaw~~~~~~~~st~~iLiGt~~G~i~e~~i~~~~~~~~~~k~v~~l~~~~~~-I 168 (936)
+..--+...+- +.|...||+.=..--.+-.. ++ +.-.++=|+++|.+|...+... +++-.++-...+ |
T Consensus 205 stlrLlDk~tG--klL~sYkGhkn~eykldc~l-~q-sdthV~sgSEDG~Vy~wdLvd~-------~~~sk~~~~~~v~v 273 (307)
T KOG0316|consen 205 STLRLLDKETG--KLLKSYKGHKNMEYKLDCCL-NQ-SDTHVFSGSEDGKVYFWDLVDE-------TQISKLSVVSTVIV 273 (307)
T ss_pred ceeeecccchh--HHHHHhcccccceeeeeeee-cc-cceeEEeccCCceEEEEEeccc-------eeeeeeccCCceeE
Confidence 66655554433 45655666544433332111 11 2224555678899999988653 344444421123 5
Q ss_pred eeEEEEeeccCCCceEEEEEECCCeEEEEecC
Q 002318 169 MGLQMETASLSNGTRYYVMAVTPTRLYSFTGF 200 (936)
Q Consensus 169 ~gi~~~~~~~~~~~~~~i~ast~~rly~f~~~ 200 (936)
++|.... ....++. ++..+.|.|.+.
T Consensus 274 ~dl~~hp-----~~~~f~~-A~~~~~~~~~~~ 299 (307)
T KOG0316|consen 274 TDLSCHP-----TMDDFIT-ATGHGDLFWYQE 299 (307)
T ss_pred Eeeeccc-----CccceeE-ecCCceeceeeh
Confidence 5555542 1123444 566777778764
No 55
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=95.40 E-value=0.82 Score=51.78 Aligned_cols=162 Identities=9% Similarity=0.124 Sum_probs=110.5
Q ss_pred HhhcCCCceeEEEEeCCEEEEEecCCeEEEEeC-CCCCce---------eeEcCCCC-----C-----------------
Q 002318 16 YAAKGRGVITCMSAGNDVIVLGTSKGWLIRHDF-GAGDSY---------DIDLSAGR-----P----------------- 63 (936)
Q Consensus 16 ~~~~~~~~i~~l~v~~n~l~l~~~~g~l~ridl-~~~~~~---------~~~l~~~~-----~----------------- 63 (936)
+.|+..+.|..++-...=+++||..+.|+.=.+ +.-... -+-++... .
T Consensus 324 elPe~~G~iRtv~e~~~di~vGTtrN~iL~Gt~~~~f~~~v~gh~delwgla~hps~~q~~T~gqdk~v~lW~~~k~~wt 403 (626)
T KOG2106|consen 324 ELPEQFGPIRTVAEGKGDILVGTTRNFILQGTLENGFTLTVQGHGDELWGLATHPSKNQLLTCGQDKHVRLWNDHKLEWT 403 (626)
T ss_pred cCchhcCCeeEEecCCCcEEEeeccceEEEeeecCCceEEEEecccceeeEEcCCChhheeeccCcceEEEccCCceeEE
Confidence 455555778888888777999999999998877 332210 01111110 0
Q ss_pred --CccceeEEEeCCCCCeEEEEeecCCCccEEEEecCCCCceeccCCCCceEEEEEecCCCCCCCCcceEEEEcCCCcEE
Q 002318 64 --GEQSIHKVFVDPGGSHCIATIVGSGGAETFYTHAKWSKPRVLSKLKGLVVNAVAWNRQQITEASTKEIILGTDTGQLH 141 (936)
Q Consensus 64 --~~~~i~~i~lDp~G~hlli~~~~~~~g~~~Y~~~~~~k~k~L~klkg~~I~sVaw~~~~~~~~st~~iLiGt~~G~i~ 141 (936)
-..+...+-+||+| |+++-+. .|--+.++......-.+.+- |-++++|+++++ .--+-+|+.++.||
T Consensus 404 ~~~~d~~~~~~fhpsg-~va~Gt~---~G~w~V~d~e~~~lv~~~~d-~~~ls~v~ysp~------G~~lAvgs~d~~iy 472 (626)
T KOG2106|consen 404 KIIEDPAECADFHPSG-VVAVGTA---TGRWFVLDTETQDLVTIHTD-NEQLSVVRYSPD------GAFLAVGSHDNHIY 472 (626)
T ss_pred EEecCceeEeeccCcc-eEEEeec---cceEEEEecccceeEEEEec-CCceEEEEEcCC------CCEEEEecCCCeEE
Confidence 02566677789999 9999988 79888888766555556554 889999999953 23788999999999
Q ss_pred EEEEecCCcccceeeEEeeeCCCCCceeeEEEEeeccCCCceEEEEEECCCeEEEEe
Q 002318 142 EMAVDEKDKREKYIKLLFELNELPEAFMGLQMETASLSNGTRYYVMAVTPTRLYSFT 198 (936)
Q Consensus 142 e~~i~~~~~~~~~~k~v~~l~~~~~~I~gi~~~~~~~~~~~~~~i~ast~~rly~f~ 198 (936)
.+.+..+++ ..+.+=...+ .||+-+-|.. +.++++-.|.+-.|..|.
T Consensus 473 iy~Vs~~g~---~y~r~~k~~g--s~ithLDwS~-----Ds~~~~~~S~d~eiLyW~ 519 (626)
T KOG2106|consen 473 IYRVSANGR---KYSRVGKCSG--SPITHLDWSS-----DSQFLVSNSGDYEILYWK 519 (626)
T ss_pred EEEECCCCc---EEEEeeeecC--ceeEEeeecC-----CCceEEeccCceEEEEEc
Confidence 999987532 2333323444 6799999973 346777666555555583
No 56
>PLN00181 protein SPA1-RELATED; Provisional
Probab=95.23 E-value=1 Score=57.05 Aligned_cols=156 Identities=10% Similarity=0.085 Sum_probs=98.9
Q ss_pred CCceeEEEEeC---CEEEEEecCCeEEEEeC-CCCCceeeEcCCCCCCccceeEEEe-CCCCCeEEEEeecCCCccEEEE
Q 002318 21 RGVITCMSAGN---DVIVLGTSKGWLIRHDF-GAGDSYDIDLSAGRPGEQSIHKVFV-DPGGSHCIATIVGSGGAETFYT 95 (936)
Q Consensus 21 ~~~i~~l~v~~---n~l~l~~~~g~l~ridl-~~~~~~~~~l~~~~~~~~~i~~i~l-Dp~G~hlli~~~~~~~g~~~Y~ 95 (936)
.+.|++++.+. +.++-|..+|+|..||+ .+..+..+..+ ..|..+-. .+.|.++++++. +|..+++
T Consensus 575 ~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~~~~------~~v~~v~~~~~~g~~latgs~---dg~I~iw 645 (793)
T PLN00181 575 EKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIGTIKTK------ANICCVQFPSESGRSLAFGSA---DHKVYYY 645 (793)
T ss_pred CCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEEEEEecC------CCeEEEEEeCCCCCEEEEEeC---CCeEEEE
Confidence 35699999973 57888999999999999 55444444322 24555544 677998888887 8999888
Q ss_pred ecCCCCceeccCCCC--ceEEEEEecCCCCCCCCcceEEEEcCCCcEEEEEEecCCcccceeeEEeeeCCCCCceeeEEE
Q 002318 96 HAKWSKPRVLSKLKG--LVVNAVAWNRQQITEASTKEIILGTDTGQLHEMAVDEKDKREKYIKLLFELNELPEAFMGLQM 173 (936)
Q Consensus 96 ~~~~~k~k~L~klkg--~~I~sVaw~~~~~~~~st~~iLiGt~~G~i~e~~i~~~~~~~~~~k~v~~l~~~~~~I~gi~~ 173 (936)
+....+. ++..+.| ..|.+|+|.+ ...++.|+.+|.|-...+..... ....+.+..+.+-...+..+.+
T Consensus 646 D~~~~~~-~~~~~~~h~~~V~~v~f~~-------~~~lvs~s~D~~ikiWd~~~~~~-~~~~~~l~~~~gh~~~i~~v~~ 716 (793)
T PLN00181 646 DLRNPKL-PLCTMIGHSKTVSYVRFVD-------SSTLVSSSTDNTLKLWDLSMSIS-GINETPLHSFMGHTNVKNFVGL 716 (793)
T ss_pred ECCCCCc-cceEecCCCCCEEEEEEeC-------CCEEEEEECCCEEEEEeCCCCcc-ccCCcceEEEcCCCCCeeEEEE
Confidence 8755431 1222233 4799999962 13688899999877766542210 0011233344332245676766
Q ss_pred EeeccCCCceEEEEEECCCeEEEEec
Q 002318 174 ETASLSNGTRYYVMAVTPTRLYSFTG 199 (936)
Q Consensus 174 ~~~~~~~~~~~~i~ast~~rly~f~~ 199 (936)
.. ..++++.++....++-|.-
T Consensus 717 s~-----~~~~lasgs~D~~v~iw~~ 737 (793)
T PLN00181 717 SV-----SDGYIATGSETNEVFVYHK 737 (793)
T ss_pred cC-----CCCEEEEEeCCCEEEEEEC
Confidence 52 2357777777788887763
No 57
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=95.18 E-value=17 Score=48.29 Aligned_cols=52 Identities=8% Similarity=0.096 Sum_probs=38.3
Q ss_pred HHHHHHc-hhhHHHHHHhcCCh----hhHHHHHHHHHHHHHhcCCHHHHHHHHHHhc
Q 002318 367 MWKVYLD-MKEYAAALANCRDP----LQRDQVYLVQAEAAFATKDFHRAASFYAKIN 418 (936)
Q Consensus 367 ~W~~ll~-~~~f~~Al~~~~~~----~~~~~I~~~~~~~L~~~g~y~~Aa~~y~~~~ 418 (936)
.|..+.. .|++++|++..+.- .....+....|..++..|++++|.+.+.+..
T Consensus 152 y~~~~~~~~g~~~~A~~~L~~ll~~~P~~~~~~~~LA~ll~~~g~~~eAl~~l~~~~ 208 (1157)
T PRK11447 152 YWRLVAKLPAQRPEAINQLQRLNADYPGNTGLRNTLALLLFSSGRRDEGFAVLEQMA 208 (1157)
T ss_pred HHHHHhhCCccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHh
Confidence 4554433 48899999886531 1234577889999999999999999998864
No 58
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=95.11 E-value=0.15 Score=60.70 Aligned_cols=147 Identities=12% Similarity=0.174 Sum_probs=99.3
Q ss_pred eeEEEEeCCEEEEEecCCeEEEEeC-CCCCceee---EcCCCCCCccceeEEEeCCCCCeEEEEeecCCCccEEEEecCC
Q 002318 24 ITCMSAGNDVIVLGTSKGWLIRHDF-GAGDSYDI---DLSAGRPGEQSIHKVFVDPGGSHCIATIVGSGGAETFYTHAKW 99 (936)
Q Consensus 24 i~~l~v~~n~l~l~~~~g~l~ridl-~~~~~~~~---~l~~~~~~~~~i~~i~lDp~G~hlli~~~~~~~g~~~Y~~~~~ 99 (936)
..|+...+|+.++|+++|.|-++++ .+--...+ +.+ +..|+.+-+|.+++-++.++. +|..-|+..+.
T Consensus 453 av~vs~CGNF~~IG~S~G~Id~fNmQSGi~r~sf~~~~ah-----~~~V~gla~D~~n~~~vsa~~---~Gilkfw~f~~ 524 (910)
T KOG1539|consen 453 AVCVSFCGNFVFIGYSKGTIDRFNMQSGIHRKSFGDSPAH-----KGEVTGLAVDGTNRLLVSAGA---DGILKFWDFKK 524 (910)
T ss_pred EEEEeccCceEEEeccCCeEEEEEcccCeeecccccCccc-----cCceeEEEecCCCceEEEccC---cceEEEEecCC
Confidence 4555567999999999999999999 33333333 233 578999999999987777776 89999998755
Q ss_pred CCceeccCC-CCceEEEEEecCCCCCCCCcceEEEEcCCCcEEEEEEecCCcccceeeEEeeeCCCCCceeeEEEEeecc
Q 002318 100 SKPRVLSKL-KGLVVNAVAWNRQQITEASTKEIILGTDTGQLHEMAVDEKDKREKYIKLLFELNELPEAFMGLQMETASL 178 (936)
Q Consensus 100 ~k~k~L~kl-kg~~I~sVaw~~~~~~~~st~~iLiGt~~G~i~e~~i~~~~~~~~~~k~v~~l~~~~~~I~gi~~~~~~~ 178 (936)
.-+ +.++ -|+.|+++.-.+ ..+-+.++..+=.|..+....+ +.++. +-+-...|+...+.
T Consensus 525 k~l--~~~l~l~~~~~~iv~hr------~s~l~a~~~ddf~I~vvD~~t~----kvvR~---f~gh~nritd~~FS---- 585 (910)
T KOG1539|consen 525 KVL--KKSLRLGSSITGIVYHR------VSDLLAIALDDFSIRVVDVVTR----KVVRE---FWGHGNRITDMTFS---- 585 (910)
T ss_pred cce--eeeeccCCCcceeeeee------hhhhhhhhcCceeEEEEEchhh----hhhHH---hhccccceeeeEeC----
Confidence 432 2222 256777766663 2345666666766777666543 12222 22212568988886
Q ss_pred CCCceEEEEEECCCeEEEEe
Q 002318 179 SNGTRYYVMAVTPTRLYSFT 198 (936)
Q Consensus 179 ~~~~~~~i~ast~~rly~f~ 198 (936)
.+.||+|.|+-++.+..|+
T Consensus 586 -~DgrWlisasmD~tIr~wD 604 (910)
T KOG1539|consen 586 -PDGRWLISASMDSTIRTWD 604 (910)
T ss_pred -CCCcEEEEeecCCcEEEEe
Confidence 4558999998878888785
No 59
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=95.02 E-value=4.6 Score=50.26 Aligned_cols=19 Identities=21% Similarity=0.342 Sum_probs=11.1
Q ss_pred cEeeccc-ccccccchhhhh
Q 002318 827 YAVIDRD-EDCGVCRRKILV 845 (936)
Q Consensus 827 ~~~i~~~-~~C~~C~k~L~~ 845 (936)
.++|..+ ..|.-|+..+-.
T Consensus 647 ~i~i~knlr~c~dch~~~k~ 666 (697)
T PLN03081 647 PLQITQSHRICKDCHKVIKF 666 (697)
T ss_pred eEEEecCCEECCCchhhHHH
Confidence 3444433 569999865533
No 60
>smart00184 RING Ring finger. E3 ubiquitin-protein ligase activity is intrinsic to the RING domain of c-Cbl and is likely to be a general function of this domain; Various RING fingers exhibit binding activity towards E2 ubiquitin-conjugating enzymes (Ubc' s)
Probab=94.98 E-value=0.023 Score=41.02 Aligned_cols=21 Identities=33% Similarity=0.793 Sum_probs=18.4
Q ss_pred CEEEEcCCChhHHHhHHHHHh
Q 002318 864 PFYVFPCGHAFHAQCLIAHVT 884 (936)
Q Consensus 864 ~fvvFpCgH~fH~~CL~~~~~ 884 (936)
..++.+|||.||..|+.....
T Consensus 10 ~~~~~~C~H~~c~~C~~~~~~ 30 (39)
T smart00184 10 DPVVLPCGHTFCRSCIRKWLK 30 (39)
T ss_pred CcEEecCCChHHHHHHHHHHH
Confidence 677889999999999988765
No 61
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=94.76 E-value=1.2 Score=53.94 Aligned_cols=153 Identities=12% Similarity=0.157 Sum_probs=98.9
Q ss_pred ceeEEEEeCC--EEEEEecCCeEEEEeC-CCCCceeeEcCCCCCCccceeEEEeCCCCCeEEEEeecCCCccEEEEecCC
Q 002318 23 VITCMSAGND--VIVLGTSKGWLIRHDF-GAGDSYDIDLSAGRPGEQSIHKVFVDPGGSHCIATIVGSGGAETFYTHAKW 99 (936)
Q Consensus 23 ~i~~l~v~~n--~l~l~~~~g~l~ridl-~~~~~~~~~l~~~~~~~~~i~~i~lDp~G~hlli~~~~~~~g~~~Y~~~~~ 99 (936)
.|.+++|+.+ +++.|-..=.|-.++. +.+......-+ +++|.++-+||+|..|.+++- +|.++.+..+.
T Consensus 98 p~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s~~~~lrgh-----~apVl~l~~~p~~~fLAvss~---dG~v~iw~~~~ 169 (933)
T KOG1274|consen 98 PIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSSQEKVLRGH-----DAPVLQLSYDPKGNFLAVSSC---DGKVQIWDLQD 169 (933)
T ss_pred cceEEEEecCCcEEEeecCceeEEEEeccccchheeeccc-----CCceeeeeEcCCCCEEEEEec---CceEEEEEccc
Confidence 4777777776 9999999888888888 55554333322 689999999999999999998 99999998765
Q ss_pred CCc-eeccCC------C-CceEEEEEecCCCCCCCCcceEEEEcCCCcEEEEEEecCCcccceeeEEeeeCCCCCceeeE
Q 002318 100 SKP-RVLSKL------K-GLVVNAVAWNRQQITEASTKEIILGTDTGQLHEMAVDEKDKREKYIKLLFELNELPEAFMGL 171 (936)
Q Consensus 100 ~k~-k~L~kl------k-g~~I~sVaw~~~~~~~~st~~iLiGt~~G~i~e~~i~~~~~~~~~~k~v~~l~~~~~~I~gi 171 (936)
... +.|.++ - ...+.-+||.|. .|.+++-..++.|--+..++ .+..++..-+.. ...++.+
T Consensus 170 ~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk------~g~la~~~~d~~Vkvy~r~~---we~~f~Lr~~~~--ss~~~~~ 238 (933)
T KOG1274|consen 170 GILSKTLTGVDKDNEFILSRICTRLAWHPK------GGTLAVPPVDNTVKVYSRKG---WELQFKLRDKLS--SSKFSDL 238 (933)
T ss_pred chhhhhcccCCccccccccceeeeeeecCC------CCeEEeeccCCeEEEEccCC---ceeheeeccccc--ccceEEE
Confidence 432 112221 1 346778999943 46888888888777665443 222222222222 2338888
Q ss_pred EEEeeccCCCceEEEEEECCCeEEEEec
Q 002318 172 QMETASLSNGTRYYVMAVTPTRLYSFTG 199 (936)
Q Consensus 172 ~~~~~~~~~~~~~~i~ast~~rly~f~~ 199 (936)
.|.. + ..|+.-.+....+.-|.-
T Consensus 239 ~wsP----n-G~YiAAs~~~g~I~vWnv 261 (933)
T KOG1274|consen 239 QWSP----N-GKYIAASTLDGQILVWNV 261 (933)
T ss_pred EEcC----C-CcEEeeeccCCcEEEEec
Confidence 8874 2 244444344555555643
No 62
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=94.76 E-value=4.1 Score=53.88 Aligned_cols=49 Identities=20% Similarity=0.213 Sum_probs=38.0
Q ss_pred HHHchhhHHHHHHhcCCh----hhHHHHHHHHHHHHHhcCCHHHHHHHHHHhc
Q 002318 370 VYLDMKEYAAALANCRDP----LQRDQVYLVQAEAAFATKDFHRAASFYAKIN 418 (936)
Q Consensus 370 ~ll~~~~f~~Al~~~~~~----~~~~~I~~~~~~~L~~~g~y~~Aa~~y~~~~ 418 (936)
.++++|++++|++..+.. ..-.......|+-++..|++++|.+.|.+..
T Consensus 360 ~~~~~g~~~eA~~~~~~Al~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL 412 (1157)
T PRK11447 360 AALKANNLAQAERLYQQARQVDNTDSYAVLGLGDVAMARKDYAAAERYYQQAL 412 (1157)
T ss_pred HHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 456889999999987531 1223466677999999999999999999875
No 63
>PTZ00420 coronin; Provisional
Probab=94.75 E-value=3.4 Score=49.56 Aligned_cols=116 Identities=8% Similarity=0.007 Sum_probs=74.6
Q ss_pred CCceeEEEEeC---CEEEEEecCCeEEEEeC-CCCC-ceeeEcCCC--CCCccceeEEEeCCCCCeEEEEeecCCCccEE
Q 002318 21 RGVITCMSAGN---DVIVLGTSKGWLIRHDF-GAGD-SYDIDLSAG--RPGEQSIHKVFVDPGGSHCIATIVGSGGAETF 93 (936)
Q Consensus 21 ~~~i~~l~v~~---n~l~l~~~~g~l~ridl-~~~~-~~~~~l~~~--~~~~~~i~~i~lDp~G~hlli~~~~~~~g~~~ 93 (936)
.+.|.+++.+. ++|+-|..+|+|..||+ .... +..+.-|.. ..-...|..+-.+|.|..+++++. .+|...
T Consensus 74 ~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~sVaf~P~g~~iLaSgS--~DgtIr 151 (568)
T PTZ00420 74 TSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKISIIDWNPMNYYIMCSSG--FDSFVN 151 (568)
T ss_pred CCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcEEEEEECCCCCeEEEEEe--CCCeEE
Confidence 35799999984 58899999999999999 4322 111100000 011367999999999998776532 178888
Q ss_pred EEecCCCCc-eeccCCCCceEEEEEecCCCCCCCCcceEEEEcCCCcEEEEEEe
Q 002318 94 YTHAKWSKP-RVLSKLKGLVVNAVAWNRQQITEASTKEIILGTDTGQLHEMAVD 146 (936)
Q Consensus 94 Y~~~~~~k~-k~L~klkg~~I~sVaw~~~~~~~~st~~iLiGt~~G~i~e~~i~ 146 (936)
.+.....+. ..+. .+..|.+++|++. ..-++.|+.+|.|....+.
T Consensus 152 IWDl~tg~~~~~i~--~~~~V~Slswspd------G~lLat~s~D~~IrIwD~R 197 (568)
T PTZ00420 152 IWDIENEKRAFQIN--MPKKLSSLKWNIK------GNLLSGTCVGKHMHIIDPR 197 (568)
T ss_pred EEECCCCcEEEEEe--cCCcEEEEEECCC------CCEEEEEecCCEEEEEECC
Confidence 887655432 2232 2457999999942 1144446678877666543
No 64
>PTZ00421 coronin; Provisional
Probab=94.72 E-value=1.9 Score=51.10 Aligned_cols=154 Identities=10% Similarity=0.026 Sum_probs=91.8
Q ss_pred eEEEEeCCEEEEEec-CCeEEEEeC-CCCCceeeEcCCCCCCccceeEEEeCC-CCCeEEEEeecCCCccEEEEecCCCC
Q 002318 25 TCMSAGNDVIVLGTS-KGWLIRHDF-GAGDSYDIDLSAGRPGEQSIHKVFVDP-GGSHCIATIVGSGGAETFYTHAKWSK 101 (936)
Q Consensus 25 ~~l~v~~n~l~l~~~-~g~l~ridl-~~~~~~~~~l~~~~~~~~~i~~i~lDp-~G~hlli~~~~~~~g~~~Y~~~~~~k 101 (936)
..++++.+++++... .|.+..+.+ ...+...- .|.-.+-.+.|..+-.+| .|..++.++. +|....++.....
T Consensus 34 ~~~~~n~~~~a~~w~~~gg~~v~~~~~~G~~~~~-~~~l~GH~~~V~~v~fsP~d~~~LaSgS~---DgtIkIWdi~~~~ 109 (493)
T PTZ00421 34 NTIACNDRFIAVPWQQLGSTAVLKHTDYGKLASN-PPILLGQEGPIIDVAFNPFDPQKLFTASE---DGTIMGWGIPEEG 109 (493)
T ss_pred CcEeECCceEEEEEecCCceEEeeccccccCCCC-CceEeCCCCCEEEEEEcCCCCCEEEEEeC---CCEEEEEecCCCc
Confidence 357778888777653 244445555 33332210 111112246899999999 6777777777 8988777653321
Q ss_pred -----ceeccCCCC--ceEEEEEecCCCCCCCCcceEEEEcCCCcEEEEEEecCCcccceeeEEeeeCCCCCceeeEEEE
Q 002318 102 -----PRVLSKLKG--LVVNAVAWNRQQITEASTKEIILGTDTGQLHEMAVDEKDKREKYIKLLFELNELPEAFMGLQME 174 (936)
Q Consensus 102 -----~k~L~klkg--~~I~sVaw~~~~~~~~st~~iLiGt~~G~i~e~~i~~~~~~~~~~k~v~~l~~~~~~I~gi~~~ 174 (936)
..++..+.| ..|.+|+|++.. ..-++.|+.+|.|....+..+ +.+..+..-..+|.++.|.
T Consensus 110 ~~~~~~~~l~~L~gH~~~V~~l~f~P~~-----~~iLaSgs~DgtVrIWDl~tg-------~~~~~l~~h~~~V~sla~s 177 (493)
T PTZ00421 110 LTQNISDPIVHLQGHTKKVGIVSFHPSA-----MNVLASAGADMVVNVWDVERG-------KAVEVIKCHSDQITSLEWN 177 (493)
T ss_pred cccccCcceEEecCCCCcEEEEEeCcCC-----CCEEEEEeCCCEEEEEECCCC-------eEEEEEcCCCCceEEEEEE
Confidence 123334445 479999999532 125667888998887766543 1223333323679999997
Q ss_pred eeccCCCceEEEEEECCCeEEEEec
Q 002318 175 TASLSNGTRYYVMAVTPTRLYSFTG 199 (936)
Q Consensus 175 ~~~~~~~~~~~i~ast~~rly~f~~ 199 (936)
. +.+.++.++.+..+.-|.-
T Consensus 178 p-----dG~lLatgs~Dg~IrIwD~ 197 (493)
T PTZ00421 178 L-----DGSLLCTTSKDKKLNIIDP 197 (493)
T ss_pred C-----CCCEEEEecCCCEEEEEEC
Confidence 3 2245555555677776753
No 65
>PHA02929 N1R/p28-like protein; Provisional
Probab=94.72 E-value=0.069 Score=56.03 Aligned_cols=42 Identities=21% Similarity=0.559 Sum_probs=28.7
Q ss_pred cccccccccchhhhhcccccccccccCCCCCCCCEEEE-cCCChhHHHhHHHHHh
Q 002318 831 DRDEDCGVCRRKILVAGRDYRMARGYASVGPMAPFYVF-PCGHAFHAQCLIAHVT 884 (936)
Q Consensus 831 ~~~~~C~~C~k~L~~~~~~~~~~~~~~~~~~~~~fvvF-pCgH~fH~~CL~~~~~ 884 (936)
..+..|++|...+.......+ .+.+- +|||.||.+|+.....
T Consensus 172 ~~~~eC~ICle~~~~~~~~~~------------~~~vl~~C~H~FC~~CI~~Wl~ 214 (238)
T PHA02929 172 SKDKECAICMEKVYDKEIKNM------------YFGILSNCNHVFCIECIDIWKK 214 (238)
T ss_pred CCCCCCccCCcccccCccccc------------cceecCCCCCcccHHHHHHHHh
Confidence 456789999998775211000 23343 6999999999988764
No 66
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.69 E-value=0.27 Score=60.72 Aligned_cols=187 Identities=13% Similarity=0.173 Sum_probs=107.1
Q ss_pred HHHHHhcCcChHHHHHHHHHHHhhcccCchhHHHHHHHHHHHHHHHHHHhhhhcccchhhccchHHHHH-HHHHHHHHHh
Q 002318 425 EITLKFISVSEQDALRTFLLRKLDNLAKDDKCQITMISTWATELYLDKINRLLLEDDTALENRSSEYQS-IMREFRAFLS 503 (936)
Q Consensus 425 ~v~lkFl~~~~~~~L~~YL~~~l~~l~~~~~~~~~lL~~Wl~ely~~~l~~~~~e~~~~~~~~~~~~~~-~~~~l~~fl~ 503 (936)
+.++.|++..+.+.++.||+.-...-+ ..-+.+-+-++.+|..+++.....+..+ ++..+. ..+++..|+.
T Consensus 596 ~~Vl~~l~~~~~~l~I~YLE~li~~~~----~~~~~lht~ll~ly~e~v~~~~~~~~kg----~e~~E~~~rekl~~~l~ 667 (877)
T KOG2063|consen 596 DDVLNYLKSKEPKLLIPYLEHLISDNR----LTSTLLHTVLLKLYLEKVLEQASTDGKG----EEAPETTVREKLLDFLE 667 (877)
T ss_pred HHHHHHhhhhCcchhHHHHHHHhHhcc----ccchHHHHHHHHHHHHHHhhccCchhcc----ccchhhhHHHHHHHHhh
Confidence 456677888888899999986443222 2235677888899998877321000000 011111 3667777776
Q ss_pred cccccCCHHHHHHHHHHcCChhHHHHHHHhhhhHHHHHHHHHhc-ccHHHHHHHHhCCCC----chhhHHhhHHHHHhH-
Q 002318 504 DCKDVLDEATTMKLLESYGRVEELVFFASLKEQHEIVVHHYIQQ-GEAKKALQMLRKPAV----PIDLQYKFAPDLIML- 577 (936)
Q Consensus 504 ~~~~~ld~~tv~~ll~~~g~~e~~l~~a~~~~dy~~ll~~yi~~-~~~~~AL~~L~~~~d----~~~li~k~~~~Ll~~- 577 (936)
... ..++..+.+-+...+.+++.--+-...+.|+..+++|... ++|+.|..+...+.. ..+.+......++..
T Consensus 668 ~s~-~Y~p~~~L~~~~~~~l~ee~aill~rl~khe~aL~Iyv~~L~d~~~A~~Yc~~~y~~~~~~~~~y~~lL~~~l~~~ 746 (877)
T KOG2063|consen 668 SSD-LYDPQLLLERLNGDELYEERAILLGRLGKHEEALHIYVHELDDIDAAESYCLPQYESDKTNKEIYLTLLRIYLNPI 746 (877)
T ss_pred hhc-ccCcchhhhhccchhHHHHHHHHHhhhhhHHHHHHHHHHHhcchhHHHHHHHHhccCCCcccHHHHHHHHHHhcch
Confidence 432 3366665555556666666655555678888888888864 889999888875532 123333333344322
Q ss_pred -----ChHHHHHHHHccC-CCCCCcchhHhhhcCCCCCCCCChHHHHHHHHHHHhh
Q 002318 578 -----DAYETVESWMTTN-NLNPRKLIPAMMRYSSEPHAKNETHEVIKYLEFCVHR 627 (936)
Q Consensus 578 -----~p~~ti~ll~~~~-~ld~~~li~~L~~~~~~~~~~~~~~~~~~YLe~li~~ 627 (936)
.|....+++.++. ++|+..+++.|-..- .-.....++..++..
T Consensus 747 ~d~~~~~~~il~~l~~h~~r~d~~~~~~~Lp~~~-------sl~~~~~~l~~~Lr~ 795 (877)
T KOG2063|consen 747 HDYKSGPLYILNFLQKHADRLDLAQVLKLLPDDI-------SLKDLCSFLSKLLRK 795 (877)
T ss_pred hhccccchhhhhHHHhhhhhcCHHHHHHhCCccC-------cHhHHHHHHHHHHHH
Confidence 2333444444443 677776655543321 223466666666644
No 67
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=94.68 E-value=1.8 Score=50.84 Aligned_cols=158 Identities=11% Similarity=0.086 Sum_probs=104.5
Q ss_pred CCceeEEEEeC--CEEEEEecCCeEEEEeCCCCCceeeEcCCCCCCccceeEEEeCCCCCeEEEEeecCCCccEEEEecC
Q 002318 21 RGVITCMSAGN--DVIVLGTSKGWLIRHDFGAGDSYDIDLSAGRPGEQSIHKVFVDPGGSHCIATIVGSGGAETFYTHAK 98 (936)
Q Consensus 21 ~~~i~~l~v~~--n~l~l~~~~g~l~ridl~~~~~~~~~l~~~~~~~~~i~~i~lDp~G~hlli~~~~~~~g~~~Y~~~~ 98 (936)
|..|+|||.++ |.|+++-.+|.|=.|++.++=..+-.++-+ .+.+|..+.--+.|+ |+.+.- +|...-++..
T Consensus 25 Ps~I~slA~s~kS~~lAvsRt~g~IEiwN~~~~w~~~~vi~g~--~drsIE~L~W~e~~R-LFS~g~---sg~i~EwDl~ 98 (691)
T KOG2048|consen 25 PSEIVSLAYSHKSNQLAVSRTDGNIEIWNLSNNWFLEPVIHGP--EDRSIESLAWAEGGR-LFSSGL---SGSITEWDLH 98 (691)
T ss_pred ccceEEEEEeccCCceeeeccCCcEEEEccCCCceeeEEEecC--CCCceeeEEEccCCe-EEeecC---CceEEEEecc
Confidence 34699999875 589999999999999995554444445532 356788877766665 555554 7998888776
Q ss_pred CCCceeccCCCCceEEEEEecCCCCCCCCcceEEEEcCCCcEEEEEEecCCcccceeeEEeeeCCCCCceeeEEEEeecc
Q 002318 99 WSKPRVLSKLKGLVVNAVAWNRQQITEASTKEIILGTDTGQLHEMAVDEKDKREKYIKLLFELNELPEAFMGLQMETASL 178 (936)
Q Consensus 99 ~~k~k~L~klkg~~I~sVaw~~~~~~~~st~~iLiGt~~G~i~e~~i~~~~~~~~~~k~v~~l~~~~~~I~gi~~~~~~~ 178 (936)
.-|++.--.--|-.|=|+|-++.. ..+.||+.+|++|...+.++. -. .+.+ |+-..+.|.+|.|..-
T Consensus 99 ~lk~~~~~d~~gg~IWsiai~p~~------~~l~IgcddGvl~~~s~~p~~--I~-~~r~--l~rq~sRvLslsw~~~-- 165 (691)
T KOG2048|consen 99 TLKQKYNIDSNGGAIWSIAINPEN------TILAIGCDDGVLYDFSIGPDK--IT-YKRS--LMRQKSRVLSLSWNPT-- 165 (691)
T ss_pred cCceeEEecCCCcceeEEEeCCcc------ceEEeecCCceEEEEecCCce--EE-EEee--cccccceEEEEEecCC--
Confidence 665554444467788899998432 378999999999998887641 11 1222 2222366888888631
Q ss_pred CCCceEEEEEECCCeEEEEecC
Q 002318 179 SNGTRYYVMAVTPTRLYSFTGF 200 (936)
Q Consensus 179 ~~~~~~~i~ast~~rly~f~~~ 200 (936)
..-++.-+.+.++--|++.
T Consensus 166 ---~~~i~~Gs~Dg~Iriwd~~ 184 (691)
T KOG2048|consen 166 ---GTKIAGGSIDGVIRIWDVK 184 (691)
T ss_pred ---ccEEEecccCceEEEEEcC
Confidence 1224444445666667653
No 68
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=94.47 E-value=1.5 Score=45.59 Aligned_cols=150 Identities=13% Similarity=0.076 Sum_probs=101.9
Q ss_pred eeEEEEeCCEEEEEecC-CeEEEEeC---CCCCceeeEcCCCCCCccceeEEEeCCCCCeEEEEeecCCCccEEEEecCC
Q 002318 24 ITCMSAGNDVIVLGTSK-GWLIRHDF---GAGDSYDIDLSAGRPGEQSIHKVFVDPGGSHCIATIVGSGGAETFYTHAKW 99 (936)
Q Consensus 24 i~~l~v~~n~l~l~~~~-g~l~ridl---~~~~~~~~~l~~~~~~~~~i~~i~lDp~G~hlli~~~~~~~g~~~Y~~~~~ 99 (936)
+..+.+.++-=.+|... -.|-.+|+ +|..+..|+.|.+ -|.-+-+...|+.+...++ ||.+-.+...+
T Consensus 43 VNrLeiTpdk~~LAaa~~qhvRlyD~~S~np~Pv~t~e~h~k-----NVtaVgF~~dgrWMyTgse---Dgt~kIWdlR~ 114 (311)
T KOG0315|consen 43 VNRLEITPDKKDLAAAGNQHVRLYDLNSNNPNPVATFEGHTK-----NVTAVGFQCDGRWMYTGSE---DGTVKIWDLRS 114 (311)
T ss_pred eeeEEEcCCcchhhhccCCeeEEEEccCCCCCceeEEeccCC-----ceEEEEEeecCeEEEecCC---CceEEEEeccC
Confidence 45555555544444433 34555588 6667788988843 4778888888999999888 99998888766
Q ss_pred CCceeccCCCCceEEEEEecCCCCCCCCcceEEEEcCCCcEEEEEEecCCcccceeeEEeeeCCCCCceeeEEEEeeccC
Q 002318 100 SKPRVLSKLKGLVVNAVAWNRQQITEASTKEIILGTDTGQLHEMAVDEKDKREKYIKLLFELNELPEAFMGLQMETASLS 179 (936)
Q Consensus 100 ~k~k~L~klkg~~I~sVaw~~~~~~~~st~~iLiGt~~G~i~e~~i~~~~~~~~~~k~v~~l~~~~~~I~gi~~~~~~~~ 179 (936)
.....+-+ ..-.|.+|..++.+ ++.+.|+++|.|---.+..+ ....++ +|+...+|+++.+..
T Consensus 115 ~~~qR~~~-~~spVn~vvlhpnQ------teLis~dqsg~irvWDl~~~----~c~~~l--iPe~~~~i~sl~v~~---- 177 (311)
T KOG0315|consen 115 LSCQRNYQ-HNSPVNTVVLHPNQ------TELISGDQSGNIRVWDLGEN----SCTHEL--IPEDDTSIQSLTVMP---- 177 (311)
T ss_pred cccchhcc-CCCCcceEEecCCc------ceEEeecCCCcEEEEEccCC----cccccc--CCCCCcceeeEEEcC----
Confidence 55444333 34799999999654 48999999999987766443 112222 455446788888763
Q ss_pred CCceEEEEEECCCeEEEEec
Q 002318 180 NGTRYYVMAVTPTRLYSFTG 199 (936)
Q Consensus 180 ~~~~~~i~ast~~rly~f~~ 199 (936)
+...++-|++..+.|-|.-
T Consensus 178 -dgsml~a~nnkG~cyvW~l 196 (311)
T KOG0315|consen 178 -DGSMLAAANNKGNCYVWRL 196 (311)
T ss_pred -CCcEEEEecCCccEEEEEc
Confidence 2246666677889998953
No 69
>PTZ00421 coronin; Provisional
Probab=94.46 E-value=3.1 Score=49.26 Aligned_cols=114 Identities=12% Similarity=0.144 Sum_probs=75.5
Q ss_pred CCceeEEEEeC---CEEEEEecCCeEEEEeC-CCCCcee----e-EcCCCCCCccceeEEEeCCCCCeEEE-EeecCCCc
Q 002318 21 RGVITCMSAGN---DVIVLGTSKGWLIRHDF-GAGDSYD----I-DLSAGRPGEQSIHKVFVDPGGSHCIA-TIVGSGGA 90 (936)
Q Consensus 21 ~~~i~~l~v~~---n~l~l~~~~g~l~ridl-~~~~~~~----~-~l~~~~~~~~~i~~i~lDp~G~hlli-~~~~~~~g 90 (936)
.+.|++++.+. +.|+.|..+|+|..||+ .+..... + .+. +-..+|..+-..|.+..+++ ++. +|
T Consensus 75 ~~~V~~v~fsP~d~~~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~---gH~~~V~~l~f~P~~~~iLaSgs~---Dg 148 (493)
T PTZ00421 75 EGPIIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQ---GHTKKVGIVSFHPSAMNVLASAGA---DM 148 (493)
T ss_pred CCCEEEEEEcCCCCCEEEEEeCCCEEEEEecCCCccccccCcceEEec---CCCCcEEEEEeCcCCCCEEEEEeC---CC
Confidence 35699999974 68999999999999999 3321111 1 111 11467899999999765444 454 78
Q ss_pred cEEEEecCCCCceeccCCCCceEEEEEecCCCCCCCCcceEEEEcCCCcEEEEEEe
Q 002318 91 ETFYTHAKWSKPRVLSKLKGLVVNAVAWNRQQITEASTKEIILGTDTGQLHEMAVD 146 (936)
Q Consensus 91 ~~~Y~~~~~~k~k~L~klkg~~I~sVaw~~~~~~~~st~~iLiGt~~G~i~e~~i~ 146 (936)
....++....+....-+.....|.+++|++. ...++.|+.+|.|....+.
T Consensus 149 tVrIWDl~tg~~~~~l~~h~~~V~sla~spd------G~lLatgs~Dg~IrIwD~r 198 (493)
T PTZ00421 149 VVNVWDVERGKAVEVIKCHSDQITSLEWNLD------GSLLCTTSKDKKLNIIDPR 198 (493)
T ss_pred EEEEEECCCCeEEEEEcCCCCceEEEEEECC------CCEEEEecCCCEEEEEECC
Confidence 8888887654432211112347999999942 2367788999988776553
No 70
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=94.45 E-value=1.8 Score=46.44 Aligned_cols=149 Identities=18% Similarity=0.199 Sum_probs=87.8
Q ss_pred ceeEEEEeCC--EEEEEecCCeEEEEeC-CCCCceeeEcCCCCCCccceeEEEeCCCCCe-EEEEeecCCCccEEEEecC
Q 002318 23 VITCMSAGND--VIVLGTSKGWLIRHDF-GAGDSYDIDLSAGRPGEQSIHKVFVDPGGSH-CIATIVGSGGAETFYTHAK 98 (936)
Q Consensus 23 ~i~~l~v~~n--~l~l~~~~g~l~ridl-~~~~~~~~~l~~~~~~~~~i~~i~lDp~G~h-lli~~~~~~~g~~~Y~~~~ 98 (936)
+|+|++-+.+ .|.-+..+.++..||+ .|+-+.+|.++ ++|...-..|.-.. +++|-- +-.-+.+..+
T Consensus 67 pi~sl~WS~dgr~LltsS~D~si~lwDl~~gs~l~rirf~------spv~~~q~hp~k~n~~va~~~---~~sp~vi~~s 137 (405)
T KOG1273|consen 67 PITSLCWSRDGRKLLTSSRDWSIKLWDLLKGSPLKRIRFD------SPVWGAQWHPRKRNKCVATIM---EESPVVIDFS 137 (405)
T ss_pred ceeEEEecCCCCEeeeecCCceeEEEeccCCCceeEEEcc------CccceeeeccccCCeEEEEEe---cCCcEEEEec
Confidence 4899988754 7777888899999999 99988999887 45666666665544 444433 2333344444
Q ss_pred CCCceeccCCCCceEE----EEEecCCCCCCCCcceEEEEcCCCcEEEEEEecCCcccceeeEEeeeCCC-CCceeeEEE
Q 002318 99 WSKPRVLSKLKGLVVN----AVAWNRQQITEASTKEIILGTDTGQLHEMAVDEKDKREKYIKLLFELNEL-PEAFMGLQM 173 (936)
Q Consensus 99 ~~k~k~L~klkg~~I~----sVaw~~~~~~~~st~~iLiGt~~G~i~e~~i~~~~~~~~~~k~v~~l~~~-~~~I~gi~~ 173 (936)
.++.+.|++-..-+-. ++.+++ ...-|+.||.+|.|..+.-+.- +.+..+.-. ...|..|.+
T Consensus 138 ~~~h~~Lp~d~d~dln~sas~~~fdr------~g~yIitGtsKGkllv~~a~t~-------e~vas~rits~~~IK~I~~ 204 (405)
T KOG1273|consen 138 DPKHSVLPKDDDGDLNSSASHGVFDR------RGKYIITGTSKGKLLVYDAETL-------ECVASFRITSVQAIKQIIV 204 (405)
T ss_pred CCceeeccCCCccccccccccccccC------CCCEEEEecCcceEEEEecchh-------eeeeeeeechheeeeEEEE
Confidence 4555566643222222 222331 2347999999999988865432 222222110 123555555
Q ss_pred EeeccCCCceEEEEEECCCeEEEEec
Q 002318 174 ETASLSNGTRYYVMAVTPTRLYSFTG 199 (936)
Q Consensus 174 ~~~~~~~~~~~~i~ast~~rly~f~~ 199 (936)
.+ ++ +++++ .|..|+.+-+.
T Consensus 205 s~---~g--~~lii-NtsDRvIR~ye 224 (405)
T KOG1273|consen 205 SR---KG--RFLII-NTSDRVIRTYE 224 (405)
T ss_pred ec---cC--cEEEE-ecCCceEEEEe
Confidence 43 33 56666 66566665543
No 71
>PF00097 zf-C3HC4: Zinc finger, C3HC4 type (RING finger); InterPro: IPR018957 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C3HC4 type zinc-finger (RING finger) is a cysteine-rich domain of 40 to 60 residues that coordinates two zinc ions, and has the consensus sequence: C-X2-C-X(9-39)-C-X(1-3)-H-X(2-3)-C-X2-C-X(4-48)-C-X2-C where X is any amino acid []. Many proteins containing a RING finger play a key role in the ubiquitination pathway []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1CHC_A 2ECW_A 2Y43_B 1V87_A 2DJB_A 2H0D_B 3RPG_C 3KNV_A 2CKL_B 1JM7_A ....
Probab=94.40 E-value=0.013 Score=43.66 Aligned_cols=22 Identities=36% Similarity=0.967 Sum_probs=19.2
Q ss_pred CEEEEcCCChhHHHhHHHHHhh
Q 002318 864 PFYVFPCGHAFHAQCLIAHVTQ 885 (936)
Q Consensus 864 ~fvvFpCgH~fH~~CL~~~~~~ 885 (936)
+.++.+|||.|+..|+.+.+..
T Consensus 11 ~~~~~~C~H~fC~~C~~~~~~~ 32 (41)
T PF00097_consen 11 PVILLPCGHSFCRDCLRKWLEN 32 (41)
T ss_dssp EEEETTTSEEEEHHHHHHHHHH
T ss_pred CCEEecCCCcchHHHHHHHHHh
Confidence 5568899999999999998875
No 72
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=94.19 E-value=1.5 Score=52.68 Aligned_cols=73 Identities=18% Similarity=0.203 Sum_probs=55.1
Q ss_pred HHHHHHHcCChhHHHHHHHhhhhHHHHHHHHHhcccHHHHHHHHhCCC--CchhhHHhhHHHHHh-HChHHHHHHH
Q 002318 514 TMKLLESYGRVEELVFFASLKEQHEIVVHHYIQQGEAKKALQMLRKPA--VPIDLQYKFAPDLIM-LDAYETVESW 586 (936)
Q Consensus 514 v~~ll~~~g~~e~~l~~a~~~~dy~~ll~~yi~~~~~~~AL~~L~~~~--d~~~li~k~~~~Ll~-~~p~~ti~ll 586 (936)
+.-|-..-|..|+++.+...++.|+-+=.+|-..|.|++|+++-.... ......|+|+..|-. .+-+.+++.+
T Consensus 806 vAvLAieLgMlEeA~~lYr~ckR~DLlNKlyQs~g~w~eA~eiAE~~DRiHLr~Tyy~yA~~Lear~Di~~Aleyy 881 (1416)
T KOG3617|consen 806 VAVLAIELGMLEEALILYRQCKRYDLLNKLYQSQGMWSEAFEIAETKDRIHLRNTYYNYAKYLEARRDIEAALEYY 881 (1416)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHhhccceehhhhHHHHHHHHHhhccHHHHHHHH
Confidence 333666789999999999999999999999999999999999876543 234668899988853 3334444444
No 73
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=93.98 E-value=1.2 Score=50.09 Aligned_cols=155 Identities=17% Similarity=0.185 Sum_probs=99.8
Q ss_pred CCcCCcceehhHHHHH------hhcCCCceeEEEEeCC-EEEEEecCCeEEEEeCCCCCceeeEcCCCCCCccceeEEEe
Q 002318 1 MDLMRQVFQVDVLERY------AAKGRGVITCMSAGND-VIVLGTSKGWLIRHDFGAGDSYDIDLSAGRPGEQSIHKVFV 73 (936)
Q Consensus 1 ~~~~~~~f~~~~~~~~------~~~~~~~i~~l~v~~n-~l~l~~~~g~l~ridl~~~~~~~~~l~~~~~~~~~i~~i~l 73 (936)
||..-++|+||--... +.++|-.-.+++-.+. .+|.+.....+|.+||...++..+..|.... ...+++.-+
T Consensus 233 ~d~~lrifqvDGk~N~~lqS~~l~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~ak~~k~~~~~g~e-~~~~e~FeV 311 (514)
T KOG2055|consen 233 LDGTLRIFQVDGKVNPKLQSIHLEKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLETAKVTKLKPPYGVE-EKSMERFEV 311 (514)
T ss_pred CCCcEEEEEecCccChhheeeeeccCccceeeecCCCceEEEecccceEEEEeeccccccccccCCCCcc-cchhheeEe
Confidence 3555567777643322 2233333345555555 7888889999999999555566666554322 346778889
Q ss_pred CCCCCeEEEEeecCCCccEEEEecCCCCceeccCCCCceEEEEEecCCCCCCCCcceEEEEcCCCcEEEEEEecCCcccc
Q 002318 74 DPGGSHCIATIVGSGGAETFYTHAKWSKPRVLSKLKGLVVNAVAWNRQQITEASTKEIILGTDTGQLHEMAVDEKDKREK 153 (936)
Q Consensus 74 Dp~G~hlli~~~~~~~g~~~Y~~~~~~k~k~L~klkg~~I~sVaw~~~~~~~~st~~iLiGt~~G~i~e~~i~~~~~~~~ 153 (936)
.|.|..+++.-+ +|..+-+|..+...-.=-|+-| .|+.++|.. +++.+++-+..|.||...+..+
T Consensus 312 Shd~~fia~~G~---~G~I~lLhakT~eli~s~KieG-~v~~~~fsS------dsk~l~~~~~~GeV~v~nl~~~----- 376 (514)
T KOG2055|consen 312 SHDSNFIAIAGN---NGHIHLLHAKTKELITSFKIEG-VVSDFTFSS------DSKELLASGGTGEVYVWNLRQN----- 376 (514)
T ss_pred cCCCCeEEEccc---CceEEeehhhhhhhhheeeecc-EEeeEEEec------CCcEEEEEcCCceEEEEecCCc-----
Confidence 999998888777 7888777766543211123333 899999981 2368888888999999988764
Q ss_pred eeeEEeeeCCCCCceeeEEEE
Q 002318 154 YIKLLFELNELPEAFMGLQME 174 (936)
Q Consensus 154 ~~k~v~~l~~~~~~I~gi~~~ 174 (936)
+.++..-+ .+.|.|..+.
T Consensus 377 --~~~~rf~D-~G~v~gts~~ 394 (514)
T KOG2055|consen 377 --SCLHRFVD-DGSVHGTSLC 394 (514)
T ss_pred --ceEEEEee-cCccceeeee
Confidence 23333332 2567777665
No 74
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=93.92 E-value=0.071 Score=49.14 Aligned_cols=62 Identities=19% Similarity=0.249 Sum_probs=55.6
Q ss_pred HHHHHHhhcCCChHHHHHHHHHhhCCCCCCCCcccCChHHHHHHHHhcCcceeeehhhhccccHHHHHHHHHh
Q 002318 637 NLLLSLYAKQEDDSALLRFLQCKFGKGRENGPEFFYDPKYALRLCLKEKRMRACVHIYGMMSMHEEAVALALQ 709 (936)
Q Consensus 637 n~ll~Ly~~~~~~~~Ll~fL~~~~~~~~~~~~~~~yd~~~aLrlc~~~~~~~~~v~L~~~~g~~~eAl~l~l~ 709 (936)
..|+..|+... +..+.+||+.. ...|++.+-+.+++++++.+.+.+|..-|+|++|+++..+
T Consensus 3 TaLlk~Yl~~~-~~~l~~llr~~----------N~C~~~~~e~~L~~~~~~~eL~~lY~~kg~h~~AL~ll~~ 64 (108)
T PF10366_consen 3 TALLKCYLETN-PSLLGPLLRLP----------NYCDLEEVEEVLKEHGKYQELVDLYQGKGLHRKALELLKK 64 (108)
T ss_pred HHHHHHHHHhC-HHHHHHHHccC----------CcCCHHHHHHHHHHcCCHHHHHHHHHccCccHHHHHHHHH
Confidence 35778888874 68899999875 5799999999999999999999999999999999999887
No 75
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=93.88 E-value=3.3 Score=49.39 Aligned_cols=165 Identities=12% Similarity=0.159 Sum_probs=105.0
Q ss_pred ceehhHHHHHhhcCCCceeEEEEeC--CEEEEEecCCeEEEEeC-CCCCceeeEcCCCCCCccceeEEEeCCCCCeEEEE
Q 002318 7 VFQVDVLERYAAKGRGVITCMSAGN--DVIVLGTSKGWLIRHDF-GAGDSYDIDLSAGRPGEQSIHKVFVDPGGSHCIAT 83 (936)
Q Consensus 7 ~f~~~~~~~~~~~~~~~i~~l~v~~--n~l~l~~~~g~l~ridl-~~~~~~~~~l~~~~~~~~~i~~i~lDp~G~hlli~ 83 (936)
+|-..+..+.+.+.+.+++|.+.+. ++|+.|.++|......+ .-+-+....+ ++.+|..+-+..+|..+.+.
T Consensus 251 ~~~~k~~k~~ln~~~~kvtaa~fH~~t~~lvvgFssG~f~LyelP~f~lih~LSi-----s~~~I~t~~~N~tGDWiA~g 325 (893)
T KOG0291|consen 251 IFWYKTKKHYLNQNSSKVTAAAFHKGTNLLVVGFSSGEFGLYELPDFNLIHSLSI-----SDQKILTVSFNSTGDWIAFG 325 (893)
T ss_pred eEEEEEEeeeecccccceeeeeccCCceEEEEEecCCeeEEEecCCceEEEEeec-----ccceeeEEEecccCCEEEEc
Confidence 3333333344455556788888875 58899999999989888 3222332222 25799999999999999887
Q ss_pred eecCCCccEEEEecCCCCceeccCCCCc--eEEEEEecCCCCCCCCcceEEEEcCCCcEEEEEEecCCcccceeeEEeee
Q 002318 84 IVGSGGAETFYTHAKWSKPRVLSKLKGL--VVNAVAWNRQQITEASTKEIILGTDTGQLHEMAVDEKDKREKYIKLLFEL 161 (936)
Q Consensus 84 ~~~~~~g~~~Y~~~~~~k~k~L~klkg~--~I~sVaw~~~~~~~~st~~iLiGt~~G~i~e~~i~~~~~~~~~~k~v~~l 161 (936)
+. .-|+...+.-++.. -+-|..|| .|+|++..++ ..-|..|..+|.|=-.....+ .|-..|.=
T Consensus 326 ~~--klgQLlVweWqsEs--YVlKQQgH~~~i~~l~YSpD------gq~iaTG~eDgKVKvWn~~Sg-----fC~vTFte 390 (893)
T KOG0291|consen 326 CS--KLGQLLVWEWQSES--YVLKQQGHSDRITSLAYSPD------GQLIATGAEDGKVKVWNTQSG-----FCFVTFTE 390 (893)
T ss_pred CC--ccceEEEEEeeccc--eeeeccccccceeeEEECCC------CcEEEeccCCCcEEEEeccCc-----eEEEEecc
Confidence 64 25677666544432 13344554 7999999843 348889999998866555443 34444443
Q ss_pred CCCCCceeeEEEEeeccCCCceEEEEEECCCeEEEEe
Q 002318 162 NELPEAFMGLQMETASLSNGTRYYVMAVTPTRLYSFT 198 (936)
Q Consensus 162 ~~~~~~I~gi~~~~~~~~~~~~~~i~ast~~rly~f~ 198 (936)
+. ..|+++.|..- .+.++-++-..++-.|+
T Consensus 391 Ht--s~Vt~v~f~~~-----g~~llssSLDGtVRAwD 420 (893)
T KOG0291|consen 391 HT--SGVTAVQFTAR-----GNVLLSSSLDGTVRAWD 420 (893)
T ss_pred CC--CceEEEEEEec-----CCEEEEeecCCeEEeee
Confidence 43 56999999852 13344333355555554
No 76
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=93.81 E-value=2.5 Score=45.45 Aligned_cols=91 Identities=18% Similarity=0.152 Sum_probs=69.2
Q ss_pred CCceeEEEEeCCEEEEEecCCeEEEEeC-CCCCceeeEcCCCCCCccceeEEEeCCCCC--eEEEEeecCCCccEEEEec
Q 002318 21 RGVITCMSAGNDVIVLGTSKGWLIRHDF-GAGDSYDIDLSAGRPGEQSIHKVFVDPGGS--HCIATIVGSGGAETFYTHA 97 (936)
Q Consensus 21 ~~~i~~l~v~~n~l~l~~~~g~l~ridl-~~~~~~~~~l~~~~~~~~~i~~i~lDp~G~--hlli~~~~~~~g~~~Y~~~ 97 (936)
.++|+|+||+..+++=|-.+-+|+.+|+ ...+...+--| .++|+-+-.+|.-. |||.+++ ||...-+..
T Consensus 43 ~~sitavAVs~~~~aSGssDetI~IYDm~k~~qlg~ll~H-----agsitaL~F~~~~S~shLlS~sd---DG~i~iw~~ 114 (362)
T KOG0294|consen 43 AGSITALAVSGPYVASGSSDETIHIYDMRKRKQLGILLSH-----AGSITALKFYPPLSKSHLLSGSD---DGHIIIWRV 114 (362)
T ss_pred ccceeEEEecceeEeccCCCCcEEEEeccchhhhcceecc-----ccceEEEEecCCcchhheeeecC---CCcEEEEEc
Confidence 3579999999999999999999999999 55555544444 46888888887766 9999999 999987764
Q ss_pred -CCCCceeccCCCCceEEEEEecC
Q 002318 98 -KWSKPRVLSKLKGLVVNAVAWNR 120 (936)
Q Consensus 98 -~~~k~k~L~klkg~~I~sVaw~~ 120 (936)
+|.-.+.+.--+|. |+-++..|
T Consensus 115 ~~W~~~~slK~H~~~-Vt~lsiHP 137 (362)
T KOG0294|consen 115 GSWELLKSLKAHKGQ-VTDLSIHP 137 (362)
T ss_pred CCeEEeeeecccccc-cceeEecC
Confidence 33333444333444 99999984
No 77
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=93.79 E-value=2.2 Score=50.13 Aligned_cols=153 Identities=18% Similarity=0.203 Sum_probs=98.8
Q ss_pred CceeEEEEeCCE--EEEEecCCeEEEEeC-CCCCceeeEcCCCCCCccceeEEEeCCCCCeEEEEeecCCCccEEEEecC
Q 002318 22 GVITCMSAGNDV--IVLGTSKGWLIRHDF-GAGDSYDIDLSAGRPGEQSIHKVFVDPGGSHCIATIVGSGGAETFYTHAK 98 (936)
Q Consensus 22 ~~i~~l~v~~n~--l~l~~~~g~l~ridl-~~~~~~~~~l~~~~~~~~~i~~i~lDp~G~hlli~~~~~~~g~~~Y~~~~ 98 (936)
..|+|+.++++- ++-+..++.+..++. .........+ .+-...|..+-..|.|..++-++. ++...-+..
T Consensus 160 ~sv~~~~fs~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~l---~~h~~~v~~~~fs~d~~~l~s~s~---D~tiriwd~- 232 (456)
T KOG0266|consen 160 PSVTCVDFSPDGRALAAASSDGLIRIWKLEGIKSNLLREL---SGHTRGVSDVAFSPDGSYLLSGSD---DKTLRIWDL- 232 (456)
T ss_pred CceEEEEEcCCCCeEEEccCCCcEEEeecccccchhhccc---cccccceeeeEECCCCcEEEEecC---CceEEEeec-
Confidence 468898888774 444556677777777 3221111112 122467999999999997666666 666655555
Q ss_pred CCCceeccCCCCc--eEEEEEecCCCCCCCCcceEEEEcCCCcEEEEEEecCCcccceeeEEeeeCCCCCceeeEEEEee
Q 002318 99 WSKPRVLSKLKGL--VVNAVAWNRQQITEASTKEIILGTDTGQLHEMAVDEKDKREKYIKLLFELNELPEAFMGLQMETA 176 (936)
Q Consensus 99 ~~k~k~L~klkg~--~I~sVaw~~~~~~~~st~~iLiGt~~G~i~e~~i~~~~~~~~~~k~v~~l~~~~~~I~gi~~~~~ 176 (936)
....+.+..++|| .|.|++|++. + ..++-|+.+|.|..-.+... .+...+.... ++|+++.+..
T Consensus 233 ~~~~~~~~~l~gH~~~v~~~~f~p~-----g-~~i~Sgs~D~tvriWd~~~~-----~~~~~l~~hs--~~is~~~f~~- 298 (456)
T KOG0266|consen 233 KDDGRNLKTLKGHSTYVTSVAFSPD-----G-NLLVSGSDDGTVRIWDVRTG-----ECVRKLKGHS--DGISGLAFSP- 298 (456)
T ss_pred cCCCeEEEEecCCCCceEEEEecCC-----C-CEEEEecCCCcEEEEeccCC-----eEEEeeeccC--CceEEEEECC-
Confidence 2222445555675 8999999943 1 48999999999998877653 2344444443 5799998863
Q ss_pred ccCCCceEEEEEECCCeEEEEec
Q 002318 177 SLSNGTRYYVMAVTPTRLYSFTG 199 (936)
Q Consensus 177 ~~~~~~~~~i~ast~~rly~f~~ 199 (936)
+.+.++-++....+.-|+-
T Consensus 299 ----d~~~l~s~s~d~~i~vwd~ 317 (456)
T KOG0266|consen 299 ----DGNLLVSASYDGTIRVWDL 317 (456)
T ss_pred ----CCCEEEEcCCCccEEEEEC
Confidence 3356666665777776753
No 78
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=93.75 E-value=0.57 Score=51.73 Aligned_cols=160 Identities=14% Similarity=0.186 Sum_probs=107.6
Q ss_pred CceeEEEEeCC--EEEEEecCCeEEEEeCCCCCceeeEcCCCCCCccceeEEEeCCCCCeEEEEeecCCCccEEEEecCC
Q 002318 22 GVITCMSAGND--VIVLGTSKGWLIRHDFGAGDSYDIDLSAGRPGEQSIHKVFVDPGGSHCIATIVGSGGAETFYTHAKW 99 (936)
Q Consensus 22 ~~i~~l~v~~n--~l~l~~~~g~l~ridl~~~~~~~~~l~~~~~~~~~i~~i~lDp~G~hlli~~~~~~~g~~~Y~~~~~ 99 (936)
.+|++|.++.| +|+=|-..|.|-.|+++-+.|..++-+. .+.|+.+-+.|+-.-.+.|++ +|..-.++...
T Consensus 139 s~Vr~m~ws~~g~wmiSgD~gG~iKyWqpnmnnVk~~~ahh----~eaIRdlafSpnDskF~t~Sd---Dg~ikiWdf~~ 211 (464)
T KOG0284|consen 139 SPVRTMKWSHNGTWMISGDKGGMIKYWQPNMNNVKIIQAHH----AEAIRDLAFSPNDSKFLTCSD---DGTIKIWDFRM 211 (464)
T ss_pred ccceeEEEccCCCEEEEcCCCceEEecccchhhhHHhhHhh----hhhhheeccCCCCceeEEecC---CCeEEEEeccC
Confidence 46899998877 5555667788989999777787777663 478999999999888888888 89888888766
Q ss_pred CCc-eeccCCCCceEEEEEecCCCCCCCCcceEEEEcCCCcEEEEEEecCCcccceeeEEeeeCCCCCceeeEEEEeecc
Q 002318 100 SKP-RVLSKLKGLVVNAVAWNRQQITEASTKEIILGTDTGQLHEMAVDEKDKREKYIKLLFELNELPEAFMGLQMETASL 178 (936)
Q Consensus 100 ~k~-k~L~klkg~~I~sVaw~~~~~~~~st~~iLiGt~~G~i~e~~i~~~~~~~~~~k~v~~l~~~~~~I~gi~~~~~~~ 178 (936)
.|. +.| .-.|.+|+||+|.+. .+-|..|+++. .-.-++++.+ ..|..+..-...|+++.|..
T Consensus 212 ~kee~vL-~GHgwdVksvdWHP~------kgLiasgskDn--lVKlWDprSg-----~cl~tlh~HKntVl~~~f~~--- 274 (464)
T KOG0284|consen 212 PKEERVL-RGHGWDVKSVDWHPT------KGLIASGSKDN--LVKLWDPRSG-----SCLATLHGHKNTVLAVKFNP--- 274 (464)
T ss_pred Cchhhee-ccCCCCcceeccCCc------cceeEEccCCc--eeEeecCCCc-----chhhhhhhccceEEEEEEcC---
Confidence 653 445 446789999999953 34778888877 2233455422 22333332124589999973
Q ss_pred CCCceEEEEEECCCeEEEEecCCchHHHHh
Q 002318 179 SNGTRYYVMAVTPTRLYSFTGFGSLDTVFA 208 (936)
Q Consensus 179 ~~~~~~~i~ast~~rly~f~~~~~l~~~f~ 208 (936)
+..+++-++-++.+--|+-. .+..||.
T Consensus 275 --n~N~Llt~skD~~~kv~DiR-~mkEl~~ 301 (464)
T KOG0284|consen 275 --NGNWLLTGSKDQSCKVFDIR-TMKELFT 301 (464)
T ss_pred --CCCeeEEccCCceEEEEehh-HhHHHHH
Confidence 22677766654433333322 3555554
No 79
>KOG1734 consensus Predicted RING-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=93.62 E-value=0.025 Score=58.49 Aligned_cols=43 Identities=30% Similarity=0.648 Sum_probs=32.2
Q ss_pred ccccccccchhhhhcccccccccccCCCCCCCCEEEEcCCChhHHHhHHHHH
Q 002318 832 RDEDCGVCRRKILVAGRDYRMARGYASVGPMAPFYVFPCGHAFHAQCLIAHV 883 (936)
Q Consensus 832 ~~~~C~~C~k~L~~~~~~~~~~~~~~~~~~~~~fvvFpCgH~fH~~CL~~~~ 883 (936)
.+..|++||+.+.- . .+..+.-.+.+-..|+|+||..|....+
T Consensus 223 ~d~vCaVCg~~~~~-----s----~~eegvienty~LsCnHvFHEfCIrGWc 265 (328)
T KOG1734|consen 223 SDSVCAVCGQQIDV-----S----VDEEGVIENTYKLSCNHVFHEFCIRGWC 265 (328)
T ss_pred CcchhHhhcchhee-----e----cchhhhhhhheeeecccchHHHhhhhhe
Confidence 46789999999887 2 1122223467888999999999998765
No 80
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=93.39 E-value=5.1 Score=45.61 Aligned_cols=49 Identities=14% Similarity=0.162 Sum_probs=30.7
Q ss_pred HHHchhhHHHHHHhcCC----h----hhHHHHHHHHHHHHHhcCCHHHHHHHHHHhc
Q 002318 370 VYLDMKEYAAALANCRD----P----LQRDQVYLVQAEAAFATKDFHRAASFYAKIN 418 (936)
Q Consensus 370 ~ll~~~~f~~Al~~~~~----~----~~~~~I~~~~~~~L~~~g~y~~Aa~~y~~~~ 418 (936)
.+..+|+|++|+.+.+. + ..+..+....|..++..|+|++|...|.+..
T Consensus 78 ~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~~l 134 (389)
T PRK11788 78 LFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGLLDRAEELFLQLV 134 (389)
T ss_pred HHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 35667777777766431 1 1223455666777777777777777777654
No 81
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=93.30 E-value=4.2 Score=42.89 Aligned_cols=152 Identities=13% Similarity=0.201 Sum_probs=95.0
Q ss_pred CCceeEEEEeCC--EEEEEecCCeEEEEeC-CCCCceeeEcCCCCCCccceeEEEeCCCCCeEEEEeecCCCccEEEEe-
Q 002318 21 RGVITCMSAGND--VIVLGTSKGWLIRHDF-GAGDSYDIDLSAGRPGEQSIHKVFVDPGGSHCIATIVGSGGAETFYTH- 96 (936)
Q Consensus 21 ~~~i~~l~v~~n--~l~l~~~~g~l~ridl-~~~~~~~~~l~~~~~~~~~i~~i~lDp~G~hlli~~~~~~~g~~~Y~~- 96 (936)
.++|-|++|... .|.-|..+.++..||. .+.++..++.+ .+|.++-+++.|+.+++||+.. -|....++
T Consensus 52 tGavW~~Did~~s~~liTGSAD~t~kLWDv~tGk~la~~k~~------~~Vk~~~F~~~gn~~l~~tD~~-mg~~~~v~~ 124 (327)
T KOG0643|consen 52 TGAVWCCDIDWDSKHLITGSADQTAKLWDVETGKQLATWKTN------SPVKRVDFSFGGNLILASTDKQ-MGYTCFVSV 124 (327)
T ss_pred CceEEEEEecCCcceeeeccccceeEEEEcCCCcEEEEeecC------CeeEEEeeccCCcEEEEEehhh-cCcceEEEE
Confidence 356788888765 5566667788888898 66666666665 6789999999999999999821 23222222
Q ss_pred --cC-------CC-CceeccCCCCceEEEEEecCCCCCCCCcceEEEEcCCCcEEEEEEecCCcccceeeEEeeeCCCCC
Q 002318 97 --AK-------WS-KPRVLSKLKGLVVNAVAWNRQQITEASTKEIILGTDTGQLHEMAVDEKDKREKYIKLLFELNELPE 166 (936)
Q Consensus 97 --~~-------~~-k~k~L~klkg~~I~sVaw~~~~~~~~st~~iLiGt~~G~i~e~~i~~~~~~~~~~k~v~~l~~~~~ 166 (936)
.. +. ....+.- ..-.|+++.|.+- ..-|+-|.++|.|-.+.+..+ ..+++. -+..+ .
T Consensus 125 fdi~~~~~~~~s~ep~~kI~t-~~skit~a~Wg~l------~~~ii~Ghe~G~is~~da~~g---~~~v~s-~~~h~--~ 191 (327)
T KOG0643|consen 125 FDIRDDSSDIDSEEPYLKIPT-PDSKITSALWGPL------GETIIAGHEDGSISIYDARTG---KELVDS-DEEHS--S 191 (327)
T ss_pred EEccCChhhhcccCceEEecC-Cccceeeeeeccc------CCEEEEecCCCcEEEEEcccC---ceeeec-hhhhc--c
Confidence 11 11 1222221 3468999999932 236788899999988877543 111111 12222 4
Q ss_pred ceeeEEEEeeccCCCceEEEEEEC--CCeEEEE
Q 002318 167 AFMGLQMETASLSNGTRYYVMAVT--PTRLYSF 197 (936)
Q Consensus 167 ~I~gi~~~~~~~~~~~~~~i~ast--~~rly~f 197 (936)
.|+.+++.+ ...++|-+++ ..+|.++
T Consensus 192 ~Ind~q~s~-----d~T~FiT~s~Dttakl~D~ 219 (327)
T KOG0643|consen 192 KINDLQFSR-----DRTYFITGSKDTTAKLVDV 219 (327)
T ss_pred ccccccccC-----CcceEEecccCccceeeec
Confidence 688888863 3456666665 3455544
No 82
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=92.96 E-value=3.3 Score=49.06 Aligned_cols=213 Identities=18% Similarity=0.238 Sum_probs=109.5
Q ss_pred hhHHHHHHchhhHHHHHHhcCC--hhhHHHH------------------HHHHHHHHHhcCCHHHHHHHHHHhc-C----
Q 002318 365 RDMWKVYLDMKEYAAALANCRD--PLQRDQV------------------YLVQAEAAFATKDFHRAASFYAKIN-Y---- 419 (936)
Q Consensus 365 ~~~W~~ll~~~~f~~Al~~~~~--~~~~~~I------------------~~~~~~~L~~~g~y~~Aa~~y~~~~-~---- 419 (936)
....+.|.+.+.+..||.+|++ |.+...| ...+|.+.-+.|+|..|...|-+.. +
T Consensus 1109 ~i~l~yf~e~~lw~dalri~kdylp~q~a~iqeeyek~~~k~gargvd~fvaqak~weq~gd~rkav~~~lkinrdst~n 1188 (1636)
T KOG3616|consen 1109 DIALNYFIEAELWPDALRIAKDYLPHQAAAIQEEYEKEALKKGARGVDGFVAQAKEWEQAGDWRKAVDALLKINRDSTDN 1188 (1636)
T ss_pred chHHHHHHHhccChHHHHHHHhhChhHHHHHHHHHHHHHHhccccccHHHHHHHHHHHhcccHHHHHHHHhhhccCCCCc
Confidence 4556778999999999999997 5443322 3456777778888999988888874 1
Q ss_pred ----CCChH---HHHHHhcCcChH-HHHHHHHHHHhhcccCchhHHHHHHHHHHHHHHHHHHhhhhcccchhhccchHHH
Q 002318 420 ----ILSFE---EITLKFISVSEQ-DALRTFLLRKLDNLAKDDKCQITMISTWATELYLDKINRLLLEDDTALENRSSEY 491 (936)
Q Consensus 420 ----~~~~E---~v~lkFl~~~~~-~~L~~YL~~~l~~l~~~~~~~~~lL~~Wl~ely~~~l~~~~~e~~~~~~~~~~~~ 491 (936)
...|| +...||+-.+.. +.+-.-++. |.....+... ..++. +..+-...|+++-+ .+ +-
T Consensus 1189 d~l~e~~~~kaadl~ikfl~~d~nme~i~aa~~a-l~~~~~~e~a-ael~l--~f~~~keaida~~~-----~e----ew 1255 (1636)
T KOG3616|consen 1189 DALAEHCTEKAADLSIKFLMGDENMEVIGAAGGA-LDEAGCHEAA-AELLL--LFDLSKEAIDAFCE-----AE----EW 1255 (1636)
T ss_pred HHHHHHHHHHHHhhhhhhcCCccchhhHHhcchh-hhcccccHHH-HHHHH--HhhhHHHHHHHHHh-----HH----HH
Confidence 11343 345566644332 222222222 2222222221 11110 01111111333310 00 00
Q ss_pred HHHHHHHHHHHhcccccCCHHHHHHHHHHcCChhHHHHHHHhhhhHHHHHHHHHhcccHHHHHHHHhCCCCc---hhhHH
Q 002318 492 QSIMREFRAFLSDCKDVLDEATTMKLLESYGRVEELVFFASLKEQHEIVVHHYIQQGEAKKALQMLRKPAVP---IDLQY 568 (936)
Q Consensus 492 ~~~~~~l~~fl~~~~~~ld~~tv~~ll~~~g~~e~~l~~a~~~~dy~~ll~~yi~~~~~~~AL~~L~~~~d~---~~li~ 568 (936)
.+.+.--+.+.-.+.+.+|+ .--+.|.+.|+.++++.. |--..+++|+.+++|++|++.-.+++-. ...+-
T Consensus 1256 akakqvake~~p~~~~~idk-~yke~lknegkl~eli~v-----dviaaidl~ien~qwdk~idtak~qnykpil~kyva 1329 (1636)
T KOG3616|consen 1256 AKAKQVAKELDPEMEDEIDK-HYKEFLKNEGKLDELIDV-----DVIAAIDLMIENDQWDKAIDTAKKQNYKPILDKYVA 1329 (1636)
T ss_pred HHHHHHHHHhCchhhHHHHH-HHHHHHhccCccccccch-----hHHHHHHHHHhcccHHHHHHHHHhcccHHHHHHHHH
Confidence 00000001111011110110 111356677777777653 2334678999999999999999988631 12344
Q ss_pred hhHHHHHh-HChHHHHHHHHccC-CCCCCc
Q 002318 569 KFAPDLIM-LDAYETVESWMTTN-NLNPRK 596 (936)
Q Consensus 569 k~~~~Ll~-~~p~~ti~ll~~~~-~ld~~~ 596 (936)
.|+..|+. .+..++..++.+++ .-+|..
T Consensus 1330 ~yaa~li~~~d~aq~lal~~q~ga~anpan 1359 (1636)
T KOG3616|consen 1330 LYAAHLIHEGDLAQALALLEQHGAPANPAN 1359 (1636)
T ss_pred HHHHHHHhcCcHHHHHHHHHHhCCCCCccc
Confidence 56667764 45556777777765 555543
No 83
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=92.94 E-value=21 Score=40.85 Aligned_cols=161 Identities=11% Similarity=0.104 Sum_probs=105.2
Q ss_pred HHHHhhcCCCceeEEEEe--CCEEEEEecCCeEEEEeCCC-CCceeeEcCCCCCCccceeEEEeCCCCCeEEEEeecCCC
Q 002318 13 LERYAAKGRGVITCMSAG--NDVIVLGTSKGWLIRHDFGA-GDSYDIDLSAGRPGEQSIHKVFVDPGGSHCIATIVGSGG 89 (936)
Q Consensus 13 ~~~~~~~~~~~i~~l~v~--~n~l~l~~~~g~l~ridl~~-~~~~~~~l~~~~~~~~~i~~i~lDp~G~hlli~~~~~~~ 89 (936)
+.+.++++.+-+.++.+- +..++.|-.+|.|-.+|..+ .-+..+.-+ ..+++.++..|.+..++++.+ ++
T Consensus 60 ~~k~~srFk~~v~s~~fR~DG~LlaaGD~sG~V~vfD~k~r~iLR~~~ah-----~apv~~~~f~~~d~t~l~s~s--Dd 132 (487)
T KOG0310|consen 60 VRKTFSRFKDVVYSVDFRSDGRLLAAGDESGHVKVFDMKSRVILRQLYAH-----QAPVHVTKFSPQDNTMLVSGS--DD 132 (487)
T ss_pred hhhhHHhhccceeEEEeecCCeEEEccCCcCcEEEeccccHHHHHHHhhc-----cCceeEEEecccCCeEEEecC--CC
Confidence 456688899999999998 88999999999999999733 112222222 578999999999877776654 25
Q ss_pred ccEEEEecCCCCceeccCCCCc--eEEEEEecCCCCCCCCcceEEEEcCCCcEEEEEEecCCcccceeeEEeeeCCCCCc
Q 002318 90 AETFYTHAKWSKPRVLSKLKGL--VVNAVAWNRQQITEASTKEIILGTDTGQLHEMAVDEKDKREKYIKLLFELNELPEA 167 (936)
Q Consensus 90 g~~~Y~~~~~~k~k~L~klkg~--~I~sVaw~~~~~~~~st~~iLiGt~~G~i~e~~i~~~~~~~~~~k~v~~l~~~~~~ 167 (936)
+..-|+..+..-+ ...+.|+ .|+|.+|.+.+ . --++-|+-||.|=...+.... ..+++++- ..|
T Consensus 133 ~v~k~~d~s~a~v--~~~l~~htDYVR~g~~~~~~-~----hivvtGsYDg~vrl~DtR~~~------~~v~elnh-g~p 198 (487)
T KOG0310|consen 133 KVVKYWDLSTAYV--QAELSGHTDYVRCGDISPAN-D----HIVVTGSYDGKVRLWDTRSLT------SRVVELNH-GCP 198 (487)
T ss_pred ceEEEEEcCCcEE--EEEecCCcceeEeeccccCC-C----eEEEecCCCceEEEEEeccCC------ceeEEecC-CCc
Confidence 6667887755443 2244554 79999999432 1 145668889987665543320 23456653 267
Q ss_pred eeeEEEEeeccCCCceEEEEEEC-CCeEEEEec
Q 002318 168 FMGLQMETASLSNGTRYYVMAVT-PTRLYSFTG 199 (936)
Q Consensus 168 I~gi~~~~~~~~~~~~~~i~ast-~~rly~f~~ 199 (936)
|..+.+-. + ...++-|.. ..|+.+..+
T Consensus 199 Ve~vl~lp----s-gs~iasAgGn~vkVWDl~~ 226 (487)
T KOG0310|consen 199 VESVLALP----S-GSLIASAGGNSVKVWDLTT 226 (487)
T ss_pred eeeEEEcC----C-CCEEEEcCCCeEEEEEecC
Confidence 99888762 1 135555544 346666663
No 84
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=92.94 E-value=3 Score=47.09 Aligned_cols=152 Identities=12% Similarity=0.109 Sum_probs=109.9
Q ss_pred CceeEEEEe--CCEEEEEecCCeEEEEeCCCCCceeeEcCCCCCCccceeEEEeCCCCCeEEEEeecCCCccEEEEecCC
Q 002318 22 GVITCMSAG--NDVIVLGTSKGWLIRHDFGAGDSYDIDLSAGRPGEQSIHKVFVDPGGSHCIATIVGSGGAETFYTHAKW 99 (936)
Q Consensus 22 ~~i~~l~v~--~n~l~l~~~~g~l~ridl~~~~~~~~~l~~~~~~~~~i~~i~lDp~G~hlli~~~~~~~g~~~Y~~~~~ 99 (936)
.-|||++-+ ++.|+.|..+|.+-.|+..++.+..+-.+ .++|..+--.-+|.|++.... +|...-++...
T Consensus 236 kdVT~L~Wn~~G~~LatG~~~G~~riw~~~G~l~~tl~~H-----kgPI~slKWnk~G~yilS~~v---D~ttilwd~~~ 307 (524)
T KOG0273|consen 236 KDVTSLDWNNDGTLLATGSEDGEARIWNKDGNLISTLGQH-----KGPIFSLKWNKKGTYILSGGV---DGTTILWDAHT 307 (524)
T ss_pred CCcceEEecCCCCeEEEeecCcEEEEEecCchhhhhhhcc-----CCceEEEEEcCCCCEEEeccC---CccEEEEeccC
Confidence 348999999 78999999999999999977776666666 468999999999999999887 88888877755
Q ss_pred CCceeccCCCCceEEEEEecCCCCCCCCcceEEEEcCCCcEEEEEEecCCcccceeeEEeeeCCCCCceeeEEEEeeccC
Q 002318 100 SKPRVLSKLKGLVVNAVAWNRQQITEASTKEIILGTDTGQLHEMAVDEKDKREKYIKLLFELNELPEAFMGLQMETASLS 179 (936)
Q Consensus 100 ~k~k~L~klkg~~I~sVaw~~~~~~~~st~~iLiGt~~G~i~e~~i~~~~~~~~~~k~v~~l~~~~~~I~gi~~~~~~~~ 179 (936)
-..++.-.++--+---|-|-.. .+|.+-..+|.|+-+.++.. +-.+.+.- .. ++|.+|+|...
T Consensus 308 g~~~q~f~~~s~~~lDVdW~~~-------~~F~ts~td~~i~V~kv~~~----~P~~t~~G-H~--g~V~alk~n~t--- 370 (524)
T KOG0273|consen 308 GTVKQQFEFHSAPALDVDWQSN-------DEFATSSTDGCIHVCKVGED----RPVKTFIG-HH--GEVNALKWNPT--- 370 (524)
T ss_pred ceEEEeeeeccCCccceEEecC-------ceEeecCCCceEEEEEecCC----Ccceeeec-cc--CceEEEEECCC---
Confidence 5444443343333345678622 28888899999999999764 22344322 33 67999999731
Q ss_pred CCceEEEEEECCCeEEEEecC
Q 002318 180 NGTRYYVMAVTPTRLYSFTGF 200 (936)
Q Consensus 180 ~~~~~~i~ast~~rly~f~~~ 200 (936)
...+.-+|.+..|--|.++
T Consensus 371 --g~LLaS~SdD~TlkiWs~~ 389 (524)
T KOG0273|consen 371 --GSLLASCSDDGTLKIWSMG 389 (524)
T ss_pred --CceEEEecCCCeeEeeecC
Confidence 2355555567778778854
No 85
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=92.92 E-value=2.1 Score=53.74 Aligned_cols=44 Identities=23% Similarity=0.223 Sum_probs=34.2
Q ss_pred hhHHHHHHhcC-ChhhHHHHHHHHHHHHHhcCCHHHHHHHHHHhc
Q 002318 375 KEYAAALANCR-DPLQRDQVYLVQAEAAFATKDFHRAASFYAKIN 418 (936)
Q Consensus 375 ~~f~~Al~~~~-~~~~~~~I~~~~~~~L~~~g~y~~Aa~~y~~~~ 418 (936)
|.|.+||.+-+ ++..+..|+..||+||-+++.|++||-.|..+.
T Consensus 922 ~Ly~~aL~ly~~~~e~~k~i~~~ya~hL~~~~~~~~Aal~Ye~~G 966 (1265)
T KOG1920|consen 922 GLYDEALALYKPDSEKQKVIYEAYADHLREELMSDEAALMYERCG 966 (1265)
T ss_pred ccchhhhheeccCHHHHHHHHHHHHHHHHHhccccHHHHHHHHhc
Confidence 34444444433 245678999999999999999999999999986
No 86
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=92.92 E-value=0.45 Score=53.31 Aligned_cols=142 Identities=11% Similarity=0.137 Sum_probs=94.4
Q ss_pred eeEEEEe--CCEEEEEecCCeEEEEeC-CCCCceeeEcCCCCCCccceeEEEeCCCCCeEEEEeecCCCccEEEEecCCC
Q 002318 24 ITCMSAG--NDVIVLGTSKGWLIRHDF-GAGDSYDIDLSAGRPGEQSIHKVFVDPGGSHCIATIVGSGGAETFYTHAKWS 100 (936)
Q Consensus 24 i~~l~v~--~n~l~l~~~~g~l~ridl-~~~~~~~~~l~~~~~~~~~i~~i~lDp~G~hlli~~~~~~~g~~~Y~~~~~~ 100 (936)
+-.+.|+ +++++++=.+|.|+.+-- ..+-+..+.++ +.|..+-.+..|.++++|.. +|++|.++...+
T Consensus 306 ~e~FeVShd~~fia~~G~~G~I~lLhakT~eli~s~Kie------G~v~~~~fsSdsk~l~~~~~---~GeV~v~nl~~~ 376 (514)
T KOG2055|consen 306 MERFEVSHDSNFIAIAGNNGHIHLLHAKTKELITSFKIE------GVVSDFTFSSDSKELLASGG---TGEVYVWNLRQN 376 (514)
T ss_pred hheeEecCCCCeEEEcccCceEEeehhhhhhhhheeeec------cEEeeEEEecCCcEEEEEcC---CceEEEEecCCc
Confidence 4455444 458888889999998866 66666777776 68888999999999999987 899999998776
Q ss_pred CceeccCCC---CceEEEEEecCCCCCCCCcceEEEEcCCCcEEEEEEecC--CcccceeeEEeeeCCCCCceeeEEEEe
Q 002318 101 KPRVLSKLK---GLVVNAVAWNRQQITEASTKEIILGTDTGQLHEMAVDEK--DKREKYIKLLFELNELPEAFMGLQMET 175 (936)
Q Consensus 101 k~k~L~klk---g~~I~sVaw~~~~~~~~st~~iLiGt~~G~i~e~~i~~~--~~~~~~~k~v~~l~~~~~~I~gi~~~~ 175 (936)
+ .+.++. +..-+++|-... ..-+-+|++.|.+-.+..+.- ++.-+-+|.+-+|- ..|+++.|.
T Consensus 377 ~--~~~rf~D~G~v~gts~~~S~n------g~ylA~GS~~GiVNIYd~~s~~~s~~PkPik~~dNLt---t~Itsl~Fn- 444 (514)
T KOG2055|consen 377 S--CLHRFVDDGSVHGTSLCISLN------GSYLATGSDSGIVNIYDGNSCFASTNPKPIKTVDNLT---TAITSLQFN- 444 (514)
T ss_pred c--eEEEEeecCccceeeeeecCC------CceEEeccCcceEEEeccchhhccCCCCchhhhhhhh---eeeeeeeeC-
Confidence 4 333332 345666665421 226778899997766654321 11112233333343 458888886
Q ss_pred eccCCCceEEEEEEC
Q 002318 176 ASLSNGTRYYVMAVT 190 (936)
Q Consensus 176 ~~~~~~~~~~i~ast 190 (936)
.+.+.+.|||+
T Consensus 445 ----~d~qiLAiaS~ 455 (514)
T KOG2055|consen 445 ----HDAQILAIASR 455 (514)
T ss_pred ----cchhhhhhhhh
Confidence 34577888777
No 87
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=92.80 E-value=0.98 Score=50.74 Aligned_cols=131 Identities=17% Similarity=0.185 Sum_probs=91.2
Q ss_pred ceeEEEEeCC----EEEEEecCCeEEEEeC-CCCCceeeEcCCCCCCccceeEEEeCCCCCeEEEEeecCCCccEEEEec
Q 002318 23 VITCMSAGND----VIVLGTSKGWLIRHDF-GAGDSYDIDLSAGRPGEQSIHKVFVDPGGSHCIATIVGSGGAETFYTHA 97 (936)
Q Consensus 23 ~i~~l~v~~n----~l~l~~~~g~l~ridl-~~~~~~~~~l~~~~~~~~~i~~i~lDp~G~hlli~~~~~~~g~~~Y~~~ 97 (936)
+||.|.+.++ .++-+-.+.++-.||+ ...-...+-+| .+|+-+-+||.++++.|-+. .|..|-.+.
T Consensus 176 sITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LLlti~fp------~si~av~lDpae~~~yiGt~---~G~I~~~~~ 246 (476)
T KOG0646|consen 176 SITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVLLLTITFP------SSIKAVALDPAERVVYIGTE---EGKIFQNLL 246 (476)
T ss_pred eeEEEEecCCCccceEEEecCCceEEEEEeccceeeEEEecC------CcceeEEEcccccEEEecCC---cceEEeeeh
Confidence 4899999887 5677778888889999 66666667676 57899999999999999998 888764432
Q ss_pred -CC----------------CCceeccCCCC-ceEEEEEecCCCCCCCCcceEEEEcCCCcEEEEEEecCCcccceeeEEe
Q 002318 98 -KW----------------SKPRVLSKLKG-LVVNAVAWNRQQITEASTKEIILGTDTGQLHEMAVDEKDKREKYIKLLF 159 (936)
Q Consensus 98 -~~----------------~k~k~L~klkg-~~I~sVaw~~~~~~~~st~~iLiGt~~G~i~e~~i~~~~~~~~~~k~v~ 159 (936)
++ ++.+.+.--+| ..|+|.|.+-+ .--.|.|..+|.+.--.+.++ +.+|.+.
T Consensus 247 ~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~D------gtlLlSGd~dg~VcvWdi~S~----Q~iRtl~ 316 (476)
T KOG0646|consen 247 FKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAISTD------GTLLLSGDEDGKVCVWDIYSK----QCIRTLQ 316 (476)
T ss_pred hcCCcccccccccccccccceeeeeccccCCcceeEEEEecC------ccEEEeeCCCCCEEEEecchH----HHHHHHh
Confidence 11 12233322222 48999999822 125666889999887766543 4556554
Q ss_pred eeCCCCCceeeEEEEe
Q 002318 160 ELNELPEAFMGLQMET 175 (936)
Q Consensus 160 ~l~~~~~~I~gi~~~~ 175 (936)
+.. +||+.+.+..
T Consensus 317 ~~k---gpVtnL~i~~ 329 (476)
T KOG0646|consen 317 TSK---GPVTNLQINP 329 (476)
T ss_pred hhc---cccceeEeec
Confidence 333 7899998853
No 88
>PF14634 zf-RING_5: zinc-RING finger domain
Probab=92.74 E-value=0.092 Score=39.84 Aligned_cols=33 Identities=30% Similarity=0.613 Sum_probs=26.8
Q ss_pred cccccchhhhhcccccccccccCCCCCCCCEEEEcCCChhHHHhHHHHH
Q 002318 835 DCGVCRRKILVAGRDYRMARGYASVGPMAPFYVFPCGHAFHAQCLIAHV 883 (936)
Q Consensus 835 ~C~~C~k~L~~~~~~~~~~~~~~~~~~~~~fvvFpCgH~fH~~CL~~~~ 883 (936)
.|.+|.++.... + ++++.+|||.|...|+....
T Consensus 1 ~C~~C~~~~~~~----~------------~~~l~~CgH~~C~~C~~~~~ 33 (44)
T PF14634_consen 1 HCNICFEKYSEE----R------------RPRLTSCGHIFCEKCLKKLK 33 (44)
T ss_pred CCcCcCccccCC----C------------CeEEcccCCHHHHHHHHhhc
Confidence 488899888220 3 79999999999999998866
No 89
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=92.63 E-value=0.61 Score=51.53 Aligned_cols=122 Identities=17% Similarity=0.202 Sum_probs=74.6
Q ss_pred ceehhHHHHH-hhcCCCceeEEEEeCC--EEEEEecCCeEEEEeC-CCCCceeeEcCCCCCCccceeEEEeCCCCCeEEE
Q 002318 7 VFQVDVLERY-AAKGRGVITCMSAGND--VIVLGTSKGWLIRHDF-GAGDSYDIDLSAGRPGEQSIHKVFVDPGGSHCIA 82 (936)
Q Consensus 7 ~f~~~~~~~~-~~~~~~~i~~l~v~~n--~l~l~~~~g~l~ridl-~~~~~~~~~l~~~~~~~~~i~~i~lDp~G~hlli 82 (936)
+|..+++.-. .-.....|++++.+++ ...+-+.+..++.||+ .+-.|.++.=++. +.-.|+.-|-- |.--+|
T Consensus 380 l~~~e~~~dr~lise~~~its~~iS~d~k~~LvnL~~qei~LWDl~e~~lv~kY~Ghkq--~~fiIrSCFgg--~~~~fi 455 (519)
T KOG0293|consen 380 LYNREARVDRGLISEEQPITSFSISKDGKLALVNLQDQEIHLWDLEENKLVRKYFGHKQ--GHFIIRSCFGG--GNDKFI 455 (519)
T ss_pred eechhhhhhhccccccCceeEEEEcCCCcEEEEEcccCeeEEeecchhhHHHHhhcccc--cceEEEeccCC--CCcceE
Confidence 4444443332 3333456999999876 5567778999999999 6666666654432 22344444432 332444
Q ss_pred EeecCCCccEEEEecCCCCceeccCCCCc--eEEEEEecCCCCCCCCcceEEEEcCCCcE
Q 002318 83 TIVGSGGAETFYTHAKWSKPRVLSKLKGL--VVNAVAWNRQQITEASTKEIILGTDTGQL 140 (936)
Q Consensus 83 ~~~~~~~g~~~Y~~~~~~k~k~L~klkg~--~I~sVaw~~~~~~~~st~~iLiGt~~G~i 140 (936)
.+.|. ++.+|-+|+.+.| +|..|.|+ .|.||+|||.. . .-+-=|+.+|.|
T Consensus 456 aSGSE-D~kvyIWhr~sgk--ll~~LsGHs~~vNcVswNP~~-p----~m~ASasDDgtI 507 (519)
T KOG0293|consen 456 ASGSE-DSKVYIWHRISGK--LLAVLSGHSKTVNCVSWNPAD-P----EMFASASDDGTI 507 (519)
T ss_pred EecCC-CceEEEEEccCCc--eeEeecCCcceeeEEecCCCC-H----HHhhccCCCCeE
Confidence 44322 8999999998875 45555664 78999999542 1 133445566755
No 90
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=92.57 E-value=6.6 Score=44.68 Aligned_cols=48 Identities=10% Similarity=0.019 Sum_probs=33.4
Q ss_pred HHchhhHHHHHHhcCCh----hhHHHHHHHHHHHHHhcCCHHHHHHHHHHhc
Q 002318 371 YLDMKEYAAALANCRDP----LQRDQVYLVQAEAAFATKDFHRAASFYAKIN 418 (936)
Q Consensus 371 ll~~~~f~~Al~~~~~~----~~~~~I~~~~~~~L~~~g~y~~Aa~~y~~~~ 418 (936)
++..|++++|+...+.. ..-..+....|..++..|+|++|...+.+..
T Consensus 45 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l 96 (389)
T PRK11788 45 FLLNEQPDKAIDLFIEMLKVDPETVELHLALGNLFRRRGEVDRAIRIHQNLL 96 (389)
T ss_pred HHhcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCcHHHHHHHHHHHh
Confidence 44567888888776531 1123456677888888999999988887654
No 91
>KOG1493 consensus Anaphase-promoting complex (APC), subunit 11 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=92.41 E-value=0.04 Score=45.70 Aligned_cols=55 Identities=29% Similarity=0.475 Sum_probs=41.7
Q ss_pred eecccccccccchhhhhcccccccccccCCCCCCCCEEEEcCCChhHHHhHHHHHhhcCCc
Q 002318 829 VIDRDEDCGVCRRKILVAGRDYRMARGYASVGPMAPFYVFPCGHAFHAQCLIAHVTQCTNE 889 (936)
Q Consensus 829 ~i~~~~~C~~C~k~L~~~~~~~~~~~~~~~~~~~~~fvvFpCgH~fH~~CL~~~~~~~~~~ 889 (936)
...+++.|.+|.-+..+. =+.+..++.+.|+|.=.|.|.||..|+.+.+....+.
T Consensus 16 W~~~~e~CGiCRm~Fdg~------Cp~Ck~PgDdCPLv~G~C~h~fh~hCI~~wl~~~tsq 70 (84)
T KOG1493|consen 16 WDAPDETCGICRMPFDGC------CPDCKLPGDDCPLVWGYCLHAFHAHCILKWLNTPTSQ 70 (84)
T ss_pred EcCCCCccceEecccCCc------CCCCcCCCCCCccHHHHHHHHHHHHHHHHHhcCcccc
Confidence 345788999999988872 2334456778899877899999999999887554443
No 92
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=92.34 E-value=6.4 Score=43.47 Aligned_cols=170 Identities=11% Similarity=0.117 Sum_probs=105.9
Q ss_pred ceehhHHHHHhhcC---CCceeEEEEeCC--EEEEEecCCeEEEEeCC-CCCceeeEcCCCCCCccceeEEEeCCCCCeE
Q 002318 7 VFQVDVLERYAAKG---RGVITCMSAGND--VIVLGTSKGWLIRHDFG-AGDSYDIDLSAGRPGEQSIHKVFVDPGGSHC 80 (936)
Q Consensus 7 ~f~~~~~~~~~~~~---~~~i~~l~v~~n--~l~l~~~~g~l~ridl~-~~~~~~~~l~~~~~~~~~i~~i~lDp~G~hl 80 (936)
+|.+.+|-|--+-. .++|.|++.+.. .|+-|-.+.++-.||+. ......+.=+ ..=|..+--.|.|.++
T Consensus 98 vfrvrpvtrCssS~~GH~e~Vl~~~fsp~g~~l~tGsGD~TvR~WD~~TeTp~~t~KgH-----~~WVlcvawsPDgk~i 172 (480)
T KOG0271|consen 98 VFRVRPVTRCSSSIAGHGEAVLSVQFSPTGSRLVTGSGDTTVRLWDLDTETPLFTCKGH-----KNWVLCVAWSPDGKKI 172 (480)
T ss_pred hhcccccceeccccCCCCCcEEEEEecCCCceEEecCCCceEEeeccCCCCcceeecCC-----ccEEEEEEECCCcchh
Confidence 56665555543322 245888888885 55555566678888992 2111112222 3456777789999999
Q ss_pred EEEeecCCCccEEEEecCCC--CceeccCCCCceEEEEEecCCCCCCCCcceEEEEcCCCcEEEEEEecCCcccceeeEE
Q 002318 81 IATIVGSGGAETFYTHAKWS--KPRVLSKLKGLVVNAVAWNRQQITEASTKEIILGTDTGQLHEMAVDEKDKREKYIKLL 158 (936)
Q Consensus 81 li~~~~~~~g~~~Y~~~~~~--k~k~L~klkg~~I~sVaw~~~~~~~~st~~iLiGt~~G~i~e~~i~~~~~~~~~~k~v 158 (936)
...+. +|+...++.++- ..+.|.. ...-|+++||.|-+... ..+.+.-++++|.+..-.+..+ +.+
T Consensus 173 ASG~~---dg~I~lwdpktg~~~g~~l~g-H~K~It~Lawep~hl~p-~~r~las~skDg~vrIWd~~~~-------~~~ 240 (480)
T KOG0271|consen 173 ASGSK---DGSIRLWDPKTGQQIGRALRG-HKKWITALAWEPLHLVP-PCRRLASSSKDGSVRIWDTKLG-------TCV 240 (480)
T ss_pred hcccc---CCeEEEecCCCCCcccccccC-cccceeEEeecccccCC-CccceecccCCCCEEEEEccCc-------eEE
Confidence 88777 899988885443 3455643 22489999999765433 3445666677898887666543 345
Q ss_pred eeeCCCCCceeeEEEEeeccCCCceEEEEEECCCeEEEEec
Q 002318 159 FELNELPEAFMGLQMETASLSNGTRYYVMAVTPTRLYSFTG 199 (936)
Q Consensus 159 ~~l~~~~~~I~gi~~~~~~~~~~~~~~i~ast~~rly~f~~ 199 (936)
+.+.+-..|||.|.|- ..+++.-.|-..++--|..
T Consensus 241 ~~lsgHT~~VTCvrwG------G~gliySgS~DrtIkvw~a 275 (480)
T KOG0271|consen 241 RTLSGHTASVTCVRWG------GEGLIYSGSQDRTIKVWRA 275 (480)
T ss_pred EEeccCccceEEEEEc------CCceEEecCCCceEEEEEc
Confidence 5565534679999995 2245554444555555643
No 93
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=92.11 E-value=2.5 Score=44.06 Aligned_cols=144 Identities=10% Similarity=0.102 Sum_probs=94.3
Q ss_pred EEeCCEEEEEecCCeEEEEeC-CCCCceeeEcCCCCCCccceeEEEeCCCCCeEEEEeecCCCccEEEEecCCCCceecc
Q 002318 28 SAGNDVIVLGTSKGWLIRHDF-GAGDSYDIDLSAGRPGEQSIHKVFVDPGGSHCIATIVGSGGAETFYTHAKWSKPRVLS 106 (936)
Q Consensus 28 ~v~~n~l~l~~~~g~l~ridl-~~~~~~~~~l~~~~~~~~~i~~i~lDp~G~hlli~~~~~~~g~~~Y~~~~~~k~k~L~ 106 (936)
+-+.+.+.=.+..++|-.||. ...+|+.++++ ..|+.+-+.+.|+.+-|+-. +.+-++...+.. .|+
T Consensus 152 c~eD~~iLSSadd~tVRLWD~rTgt~v~sL~~~------s~VtSlEvs~dG~ilTia~g----ssV~Fwdaksf~--~lK 219 (334)
T KOG0278|consen 152 CHEDKCILSSADDKTVRLWDHRTGTEVQSLEFN------SPVTSLEVSQDGRILTIAYG----SSVKFWDAKSFG--LLK 219 (334)
T ss_pred eccCceEEeeccCCceEEEEeccCcEEEEEecC------CCCcceeeccCCCEEEEecC----ceeEEecccccc--cee
Confidence 345556666688899999999 88889989887 46788889999986666543 555566654432 121
Q ss_pred CCC-CceEEEEEecCCCCCCCCcceEEEEcCCCcEEEEEEecCCcccceeeEEeeeCCCCCceeeEEEEeec-----cCC
Q 002318 107 KLK-GLVVNAVAWNRQQITEASTKEIILGTDTGQLHEMAVDEKDKREKYIKLLFELNELPEAFMGLQMETAS-----LSN 180 (936)
Q Consensus 107 klk-g~~I~sVaw~~~~~~~~st~~iLiGt~~G~i~e~~i~~~~~~~~~~k~v~~l~~~~~~I~gi~~~~~~-----~~~ 180 (936)
..+ -+.|+|....|. ..-|+.|.+++.+|-+....+...+. | ..+-++||..+.+..-. ++.
T Consensus 220 s~k~P~nV~SASL~P~------k~~fVaGged~~~~kfDy~TgeEi~~-----~-nkgh~gpVhcVrFSPdGE~yAsGSE 287 (334)
T KOG0278|consen 220 SYKMPCNVESASLHPK------KEFFVAGGEDFKVYKFDYNTGEEIGS-----Y-NKGHFGPVHCVRFSPDGELYASGSE 287 (334)
T ss_pred eccCccccccccccCC------CceEEecCcceEEEEEeccCCceeee-----c-ccCCCCceEEEEECCCCceeeccCC
Confidence 111 268888888743 25899999999999887765422222 2 12236889999986421 112
Q ss_pred CceEEEEEECCCeEE
Q 002318 181 GTRYYVMAVTPTRLY 195 (936)
Q Consensus 181 ~~~~~i~ast~~rly 195 (936)
+....+|.+|+..-|
T Consensus 288 DGTirlWQt~~~~~~ 302 (334)
T KOG0278|consen 288 DGTIRLWQTTPGKTY 302 (334)
T ss_pred CceEEEEEecCCCch
Confidence 334566666666666
No 94
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=91.93 E-value=27 Score=44.46 Aligned_cols=65 Identities=17% Similarity=0.074 Sum_probs=46.9
Q ss_pred HHHhcCcceeeehhhhccccHHHHHHHHHh-cCHHHHHHHhhccCCCHHHHHHHHHHHHHHHhhcc
Q 002318 680 LCLKEKRMRACVHIYGMMSMHEEAVALALQ-VDPELAMAEADKVEDDEDLRKKLWLMVAKHVIEQE 744 (936)
Q Consensus 680 lc~~~~~~~~~v~L~~~~g~~~eAl~l~l~-~di~lA~~~a~~~~~d~~~~kkLWl~ll~~~i~~~ 744 (936)
.|.+...++.++..|.+.|+.++|+.-+.. +|...|...+.+-..+.++-..+=..++..+..+.
T Consensus 948 hL~~~~~~~~Aal~Ye~~GklekAl~a~~~~~dWr~~l~~a~ql~~~~de~~~~a~~L~s~L~e~~ 1013 (1265)
T KOG1920|consen 948 HLREELMSDEAALMYERCGKLEKALKAYKECGDWREALSLAAQLSEGKDELVILAEELVSRLVEQR 1013 (1265)
T ss_pred HHHHhccccHHHHHHHHhccHHHHHHHHHHhccHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHcc
Confidence 356667888999999999999999999998 99999998886443333332333355555555543
No 95
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=91.69 E-value=11 Score=43.51 Aligned_cols=130 Identities=16% Similarity=0.172 Sum_probs=80.7
Q ss_pred ceeEEEEeC-CEEEEEecCCeEEEEeC-CCCCceeeEcCCCCCCccceeEEEeCCCCCeEEEEeecCCCccEEEEecCCC
Q 002318 23 VITCMSAGN-DVIVLGTSKGWLIRHDF-GAGDSYDIDLSAGRPGEQSIHKVFVDPGGSHCIATIVGSGGAETFYTHAKWS 100 (936)
Q Consensus 23 ~i~~l~v~~-n~l~l~~~~g~l~ridl-~~~~~~~~~l~~~~~~~~~i~~i~lDp~G~hlli~~~~~~~g~~~Y~~~~~~ 100 (936)
.|++|++++ ..++..--+.+|-++++ +..-.....++...+ + ..+-+.+.|..+++.+. ++-+ .+.. .+
T Consensus 365 qI~~~~~~~~~~~~t~g~Dd~l~~~~~~~~~~t~~~~~~lg~Q---P-~~lav~~d~~~avv~~~---~~iv-~l~~-~~ 435 (603)
T KOG0318|consen 365 QIKGMAASESGELFTIGWDDTLRVISLKDNGYTKSEVVKLGSQ---P-KGLAVLSDGGTAVVACI---SDIV-LLQD-QT 435 (603)
T ss_pred eEEEEeecCCCcEEEEecCCeEEEEecccCcccccceeecCCC---c-eeEEEcCCCCEEEEEec---CcEE-EEec-CC
Confidence 488999988 55544444458999988 333333222232222 2 37888888887777776 3433 3322 22
Q ss_pred CceeccCCCCceEEEEEecCCCCCCCCcceEEEEcCCCcEEEEEEecCCcccceeeEEeeeCCCCCceeeEEEE
Q 002318 101 KPRVLSKLKGLVVNAVAWNRQQITEASTKEIILGTDTGQLHEMAVDEKDKREKYIKLLFELNELPEAFMGLQME 174 (936)
Q Consensus 101 k~k~L~klkg~~I~sVaw~~~~~~~~st~~iLiGt~~G~i~e~~i~~~~~~~~~~k~v~~l~~~~~~I~gi~~~ 174 (936)
++-.++ -++..++||.++. ..++.+|.++|.|+.+.|.+....+. -.+-+-.++|+.|.+.
T Consensus 436 ~~~~~~--~~y~~s~vAv~~~------~~~vaVGG~Dgkvhvysl~g~~l~ee-----~~~~~h~a~iT~vayS 496 (603)
T KOG0318|consen 436 KVSSIP--IGYESSAVAVSPD------GSEVAVGGQDGKVHVYSLSGDELKEE-----AKLLEHRAAITDVAYS 496 (603)
T ss_pred cceeec--cccccceEEEcCC------CCEEEEecccceEEEEEecCCcccce-----eeeecccCCceEEEEC
Confidence 332333 4688999999953 34899999999999999987532111 1111223789999997
No 96
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=91.34 E-value=3.1 Score=50.04 Aligned_cols=152 Identities=13% Similarity=0.190 Sum_probs=102.1
Q ss_pred CCceeEEEEe---CCEEEEEecCCeEEEEeC-CCCCceeeEcCCCCCCccceeEEEeCCCCCeEEEEeecCCCccEEEEe
Q 002318 21 RGVITCMSAG---NDVIVLGTSKGWLIRHDF-GAGDSYDIDLSAGRPGEQSIHKVFVDPGGSHCIATIVGSGGAETFYTH 96 (936)
Q Consensus 21 ~~~i~~l~v~---~n~l~l~~~~g~l~ridl-~~~~~~~~~l~~~~~~~~~i~~i~lDp~G~hlli~~~~~~~g~~~Y~~ 96 (936)
+|-+||+|.+ .|...=|.-+|+|-+|++ +..-+...+++ .-|+-+..-|.|...+|-|= +|.+.+++
T Consensus 409 ndfVTcVaFnPvDDryFiSGSLD~KvRiWsI~d~~Vv~W~Dl~------~lITAvcy~PdGk~avIGt~---~G~C~fY~ 479 (712)
T KOG0283|consen 409 NDFVTCVAFNPVDDRYFISGSLDGKVRLWSISDKKVVDWNDLR------DLITAVCYSPDGKGAVIGTF---NGYCRFYD 479 (712)
T ss_pred CCeeEEEEecccCCCcEeecccccceEEeecCcCeeEeehhhh------hhheeEEeccCCceEEEEEe---ccEEEEEE
Confidence 3568888866 467888889999999999 66656777886 57899999999999999998 89886554
Q ss_pred cCCCCc--------eeccCCCCceEEEEEecCCCCCCCCcceEEEEcCCCcEEEEEEecCCcccceeeEEeeeCC---CC
Q 002318 97 AKWSKP--------RVLSKLKGLVVNAVAWNRQQITEASTKEIILGTDTGQLHEMAVDEKDKREKYIKLLFELNE---LP 165 (936)
Q Consensus 97 ~~~~k~--------k~L~klkg~~I~sVaw~~~~~~~~st~~iLiGt~~G~i~e~~i~~~~~~~~~~k~v~~l~~---~~ 165 (936)
..-.|. +.=.|-+|..||.+.+.+... + ++|+-|+|-.|=.+.+...+ .+.++.+ ..
T Consensus 480 t~~lk~~~~~~I~~~~~Kk~~~~rITG~Q~~p~~~---~--~vLVTSnDSrIRI~d~~~~~-------lv~KfKG~~n~~ 547 (712)
T KOG0283|consen 480 TEGLKLVSDFHIRLHNKKKKQGKRITGLQFFPGDP---D--EVLVTSNDSRIRIYDGRDKD-------LVHKFKGFRNTS 547 (712)
T ss_pred ccCCeEEEeeeEeeccCccccCceeeeeEecCCCC---C--eEEEecCCCceEEEeccchh-------hhhhhcccccCC
Confidence 322211 111234567899999985321 2 89999999887766553321 1112221 01
Q ss_pred CceeeEEEEeeccCCCceEEEEEECCCeEEEEec
Q 002318 166 EAFMGLQMETASLSNGTRYYVMAVTPTRLYSFTG 199 (936)
Q Consensus 166 ~~I~gi~~~~~~~~~~~~~~i~ast~~rly~f~~ 199 (936)
+++.+ .+. .+.++||.++-..-+|-|..
T Consensus 548 SQ~~A-sfs-----~Dgk~IVs~seDs~VYiW~~ 575 (712)
T KOG0283|consen 548 SQISA-SFS-----SDGKHIVSASEDSWVYIWKN 575 (712)
T ss_pred cceee-eEc-----cCCCEEEEeecCceEEEEeC
Confidence 12221 221 23378999998999999975
No 97
>COG5194 APC11 Component of SCF ubiquitin ligase and anaphase-promoting complex [Posttranslational modification, protein turnover, chaperones / Cell division and chromosome partitioning]
Probab=91.27 E-value=0.23 Score=41.71 Aligned_cols=50 Identities=26% Similarity=0.568 Sum_probs=34.4
Q ss_pred cccccccchhhhhcccccccccccCCCCCCCCEEEEcCCChhHHHhHHHHHhh
Q 002318 833 DEDCGVCRRKILVAGRDYRMARGYASVGPMAPFYVFPCGHAFHAQCLIAHVTQ 885 (936)
Q Consensus 833 ~~~C~~C~k~L~~~~~~~~~~~~~~~~~~~~~fvvFpCgH~fH~~CL~~~~~~ 885 (936)
-+.|++|.-.+.+..++=+ .+ ..++...+.+-=-|.|+||..|..+.+..
T Consensus 20 id~CaICRnhim~~C~eCq--~~-~~~~~eC~v~wG~CnHaFH~HCI~rWL~T 69 (88)
T COG5194 20 IDVCAICRNHIMGTCPECQ--FG-MTPGDECPVVWGVCNHAFHDHCIYRWLDT 69 (88)
T ss_pred cchhhhhhccccCcCcccc--cC-CCCCCcceEEEEecchHHHHHHHHHHHhh
Confidence 4789999999888433210 11 12344557777789999999999987643
No 98
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=90.87 E-value=5.4 Score=48.71 Aligned_cols=146 Identities=13% Similarity=0.204 Sum_probs=96.3
Q ss_pred eeEEEEeCCEEEEEecCCeEEEEeC-CC-CCceeeEcCCCCCCccceeEEEeCCCCCeEEEEeecCCCccEEEEecCCCC
Q 002318 24 ITCMSAGNDVIVLGTSKGWLIRHDF-GA-GDSYDIDLSAGRPGEQSIHKVFVDPGGSHCIATIVGSGGAETFYTHAKWSK 101 (936)
Q Consensus 24 i~~l~v~~n~l~l~~~~g~l~ridl-~~-~~~~~~~l~~~~~~~~~i~~i~lDp~G~hlli~~~~~~~g~~~Y~~~~~~k 101 (936)
-.|++-.++++|..-++|.|-.|+- .+ ++...|++. ...|..|-.+. .|++.++. ++.+.-....+..
T Consensus 18 ~i~~d~~gefi~tcgsdg~ir~~~~~sd~e~P~ti~~~-----g~~v~~ia~~s--~~f~~~s~---~~tv~~y~fps~~ 87 (933)
T KOG1274|consen 18 LICYDPDGEFICTCGSDGDIRKWKTNSDEEEPETIDIS-----GELVSSIACYS--NHFLTGSE---QNTVLRYKFPSGE 87 (933)
T ss_pred EEEEcCCCCEEEEecCCCceEEeecCCcccCCchhhcc-----CceeEEEeecc--cceEEeec---cceEEEeeCCCCC
Confidence 3577888999999999999999976 55 444445442 36777777764 48999988 7777544444444
Q ss_pred ce-eccCCCCceEEEEEecCCCCCCCCcceEEEEcCCCcEEEEEEecCCcccceeeEEeeeCCCCCceeeEEEEeeccCC
Q 002318 102 PR-VLSKLKGLVVNAVAWNRQQITEASTKEIILGTDTGQLHEMAVDEKDKREKYIKLLFELNELPEAFMGLQMETASLSN 180 (936)
Q Consensus 102 ~k-~L~klkg~~I~sVaw~~~~~~~~st~~iLiGt~~G~i~e~~i~~~~~~~~~~k~v~~l~~~~~~I~gi~~~~~~~~~ 180 (936)
.. .|.++ -.+|+.++++. +..-+..|+.+-.|--...+.. .-+. .+-+-.+||.+|.+..
T Consensus 88 ~~~iL~Rf-tlp~r~~~v~g------~g~~iaagsdD~~vK~~~~~D~-----s~~~--~lrgh~apVl~l~~~p----- 148 (933)
T KOG1274|consen 88 EDTILARF-TLPIRDLAVSG------SGKMIAAGSDDTAVKLLNLDDS-----SQEK--VLRGHDAPVLQLSYDP----- 148 (933)
T ss_pred ccceeeee-eccceEEEEec------CCcEEEeecCceeEEEEecccc-----chhe--eecccCCceeeeeEcC-----
Confidence 33 46654 47999999993 2225666666654554444332 1122 2222237899999973
Q ss_pred CceEEEEEECCCeEEEEe
Q 002318 181 GTRYYVMAVTPTRLYSFT 198 (936)
Q Consensus 181 ~~~~~i~ast~~rly~f~ 198 (936)
+..++++++++..++-|.
T Consensus 149 ~~~fLAvss~dG~v~iw~ 166 (933)
T KOG1274|consen 149 KGNFLAVSSCDGKVQIWD 166 (933)
T ss_pred CCCEEEEEecCceEEEEE
Confidence 346888888888888775
No 99
>PTZ00420 coronin; Provisional
Probab=90.71 E-value=16 Score=44.07 Aligned_cols=71 Identities=10% Similarity=0.156 Sum_probs=51.8
Q ss_pred CCceeEEEEeCC---EEEEEecCCeEEEEeC-CCCCceeeEcCCCCCCccceeEEEeCCCCCeEEEEeecCCCccEEEEe
Q 002318 21 RGVITCMSAGND---VIVLGTSKGWLIRHDF-GAGDSYDIDLSAGRPGEQSIHKVFVDPGGSHCIATIVGSGGAETFYTH 96 (936)
Q Consensus 21 ~~~i~~l~v~~n---~l~l~~~~g~l~ridl-~~~~~~~~~l~~~~~~~~~i~~i~lDp~G~hlli~~~~~~~g~~~Y~~ 96 (936)
.+.|++++.+.+ +++-|..+|+|..||+ .+..+..+..+ ..|..+..+|.|..+++++. ++....+.
T Consensus 125 ~~~V~sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~~~~i~~~------~~V~SlswspdG~lLat~s~---D~~IrIwD 195 (568)
T PTZ00420 125 KKKISIIDWNPMNYYIMCSSGFDSFVNIWDIENEKRAFQINMP------KKLSSLKWNIKGNLLSGTCV---GKHMHIID 195 (568)
T ss_pred CCcEEEEEECCCCCeEEEEEeCCCeEEEEECCCCcEEEEEecC------CcEEEEEECCCCCEEEEEec---CCEEEEEE
Confidence 356899999863 4556778899999999 55544444322 46899999999998877766 68787777
Q ss_pred cCCC
Q 002318 97 AKWS 100 (936)
Q Consensus 97 ~~~~ 100 (936)
....
T Consensus 196 ~Rsg 199 (568)
T PTZ00420 196 PRKQ 199 (568)
T ss_pred CCCC
Confidence 6543
No 100
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=90.69 E-value=34 Score=42.31 Aligned_cols=80 Identities=18% Similarity=0.179 Sum_probs=51.2
Q ss_pred ChHHHHHHHHHHHhhcCCCCHhHHHHHHHHhhcCCChHHHHHHHHHhhCCCCCCCCcccCChHHHHHHHHhcCcceeeeh
Q 002318 613 ETHEVIKYLEFCVHRLHNEDPGVHNLLLSLYAKQEDDSALLRFLQCKFGKGRENGPEFFYDPKYALRLCLKEKRMRACVH 692 (936)
Q Consensus 613 ~~~~~~~YLe~li~~~~~~~~~~hn~ll~Ly~~~~~~~~Ll~fL~~~~~~~~~~~~~~~yd~~~aLrlc~~~~~~~~~v~ 692 (936)
....+++||.-+.+..+.....++-.+-..|.+.+..+..+.|-+.-- . .. ..++|.-.-| .-
T Consensus 429 ~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl---~-~~-p~~~D~Ri~L------------as 491 (895)
T KOG2076|consen 429 KYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEYEEAIEFYEKVL---I-LA-PDNLDARITL------------AS 491 (895)
T ss_pred cHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhHHHHHHHHHHHH---h-cC-CCchhhhhhH------------HH
Confidence 467899999999887766666777777788877543444555544320 0 00 1344443322 24
Q ss_pred hhhccccHHHHHHHHHh
Q 002318 693 IYGMMSMHEEAVALALQ 709 (936)
Q Consensus 693 L~~~~g~~~eAl~l~l~ 709 (936)
||.++|++++|+..+=.
T Consensus 492 l~~~~g~~EkalEtL~~ 508 (895)
T KOG2076|consen 492 LYQQLGNHEKALETLEQ 508 (895)
T ss_pred HHHhcCCHHHHHHHHhc
Confidence 68899999999998765
No 101
>COG5540 RING-finger-containing ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=90.62 E-value=0.15 Score=53.70 Aligned_cols=38 Identities=24% Similarity=0.684 Sum_probs=31.0
Q ss_pred ccccccccchhhhhcccccccccccCCCCCCCCEEEEcCCChhHHHhHHHHHhh
Q 002318 832 RDEDCGVCRRKILVAGRDYRMARGYASVGPMAPFYVFPCGHAFHAQCLIAHVTQ 885 (936)
Q Consensus 832 ~~~~C~~C~k~L~~~~~~~~~~~~~~~~~~~~~fvvFpCgH~fH~~CL~~~~~~ 885 (936)
.+-.|++|-....- +++.+|-||.|.||..|+.+.+..
T Consensus 322 ~GveCaICms~fiK----------------~d~~~vlPC~H~FH~~Cv~kW~~~ 359 (374)
T COG5540 322 KGVECAICMSNFIK----------------NDRLRVLPCDHRFHVGCVDKWLLG 359 (374)
T ss_pred CCceEEEEhhhhcc----------------cceEEEeccCceechhHHHHHHhh
Confidence 34679999887754 137999999999999999998863
No 102
>smart00504 Ubox Modified RING finger domain. Modified RING finger domain, without the full complement of Zn2+-binding ligands. Probable involvement in E2-dependent ubiquitination.
Probab=90.49 E-value=0.15 Score=41.77 Aligned_cols=32 Identities=13% Similarity=0.390 Sum_probs=27.2
Q ss_pred cccccchhhhhcccccccccccCCCCCCCCEEEEcCCChhHHHhHHHHHhh
Q 002318 835 DCGVCRRKILVAGRDYRMARGYASVGPMAPFYVFPCGHAFHAQCLIAHVTQ 885 (936)
Q Consensus 835 ~C~~C~k~L~~~~~~~~~~~~~~~~~~~~~fvvFpCgH~fH~~CL~~~~~~ 885 (936)
.|++|++.+.. | |+.+|||.|-..|+.+.+..
T Consensus 3 ~Cpi~~~~~~~------------------P-v~~~~G~v~~~~~i~~~~~~ 34 (63)
T smart00504 3 LCPISLEVMKD------------------P-VILPSGQTYERRAIEKWLLS 34 (63)
T ss_pred CCcCCCCcCCC------------------C-EECCCCCEEeHHHHHHHHHH
Confidence 59999988766 6 56799999999999998865
No 103
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=90.43 E-value=9.8 Score=44.75 Aligned_cols=153 Identities=14% Similarity=0.195 Sum_probs=96.5
Q ss_pred CCceeEEEEeCC--EEEEEecCCeEEEEeC-CCCC-ceeeEcCCCCCCccceeEEEeCCCCCeEEEEeecCCCccEEEEe
Q 002318 21 RGVITCMSAGND--VIVLGTSKGWLIRHDF-GAGD-SYDIDLSAGRPGEQSIHKVFVDPGGSHCIATIVGSGGAETFYTH 96 (936)
Q Consensus 21 ~~~i~~l~v~~n--~l~l~~~~g~l~ridl-~~~~-~~~~~l~~~~~~~~~i~~i~lDp~G~hlli~~~~~~~g~~~Y~~ 96 (936)
...|.+++.+.+ .++=|..+++|-.||+ .+.. +..+.=| ...|+.+-++|.| +++++.. +++.+..++
T Consensus 203 ~~~v~~~~fs~d~~~l~s~s~D~tiriwd~~~~~~~~~~l~gH-----~~~v~~~~f~p~g-~~i~Sgs--~D~tvriWd 274 (456)
T KOG0266|consen 203 TRGVSDVAFSPDGSYLLSGSDDKTLRIWDLKDDGRNLKTLKGH-----STYVTSVAFSPDG-NLLVSGS--DDGTVRIWD 274 (456)
T ss_pred ccceeeeEECCCCcEEEEecCCceEEEeeccCCCeEEEEecCC-----CCceEEEEecCCC-CEEEEec--CCCcEEEEe
Confidence 345888888776 4566667789999999 5533 3333333 3578999999999 5555433 289999998
Q ss_pred cCCCCceeccCCCCc--eEEEEEecCCCCCCCCcceEEEEcCCCcEEEEEEecCCcccceeeEEeeeCCCCCceeeEEEE
Q 002318 97 AKWSKPRVLSKLKGL--VVNAVAWNRQQITEASTKEIILGTDTGQLHEMAVDEKDKREKYIKLLFELNELPEAFMGLQME 174 (936)
Q Consensus 97 ~~~~k~k~L~klkg~--~I~sVaw~~~~~~~~st~~iLiGt~~G~i~e~~i~~~~~~~~~~k~v~~l~~~~~~I~gi~~~ 174 (936)
...-+ .+.+++++ .|++++++++ ...++.|+.+|.|....+.... .+-.+.+ .-.+.+.|++.+.+.
T Consensus 275 ~~~~~--~~~~l~~hs~~is~~~f~~d------~~~l~s~s~d~~i~vwd~~~~~--~~~~~~~-~~~~~~~~~~~~~fs 343 (456)
T KOG0266|consen 275 VRTGE--CVRKLKGHSDGISGLAFSPD------GNLLVSASYDGTIRVWDLETGS--KLCLKLL-SGAENSAPVTSVQFS 343 (456)
T ss_pred ccCCe--EEEeeeccCCceEEEEECCC------CCEEEEcCCCccEEEEECCCCc--eeeeecc-cCCCCCCceeEEEEC
Confidence 87633 33344443 8999999942 3488888889999888776531 1111222 222211268888886
Q ss_pred eeccCCCceEEEEEECCCeEEEE
Q 002318 175 TASLSNGTRYYVMAVTPTRLYSF 197 (936)
Q Consensus 175 ~~~~~~~~~~~i~ast~~rly~f 197 (936)
. +..+++.++.+..+-.|
T Consensus 344 p-----~~~~ll~~~~d~~~~~w 361 (456)
T KOG0266|consen 344 P-----NGKYLLSASLDRTLKLW 361 (456)
T ss_pred C-----CCcEEEEecCCCeEEEE
Confidence 3 33566666555344434
No 104
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=90.38 E-value=19 Score=44.32 Aligned_cols=25 Identities=24% Similarity=0.324 Sum_probs=22.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhc
Q 002318 394 YLVQAEAAFATKDFHRAASFYAKIN 418 (936)
Q Consensus 394 ~~~~~~~L~~~g~y~~Aa~~y~~~~ 418 (936)
+...|.++|..|++++|.+++.+.+
T Consensus 142 ll~eAN~lfarg~~eeA~~i~~EvI 166 (895)
T KOG2076|consen 142 LLGEANNLFARGDLEEAEEILMEVI 166 (895)
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 4578999999999999999998876
No 105
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=90.34 E-value=13 Score=40.06 Aligned_cols=79 Identities=14% Similarity=0.196 Sum_probs=48.0
Q ss_pred eEEEEEecCCCCCCCCcceEEEEcCC-------CcEEEEEEecCCcccceeeEEeeeCCCCCceeeEEEEeeccCCCceE
Q 002318 112 VVNAVAWNRQQITEASTKEIILGTDT-------GQLHEMAVDEKDKREKYIKLLFELNELPEAFMGLQMETASLSNGTRY 184 (936)
Q Consensus 112 ~I~sVaw~~~~~~~~st~~iLiGt~~-------G~i~e~~i~~~~~~~~~~k~v~~l~~~~~~I~gi~~~~~~~~~~~~~ 184 (936)
..-||.||+ ++..+..|.+|..+ -.|||+.=.. +.+..+-+|++.+.||+.|.|....+ .....
T Consensus 171 ~~~CvsWn~---sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~-----rKw~kva~L~d~~dpI~di~wAPn~G-r~y~~ 241 (361)
T KOG2445|consen 171 PCFCVSWNP---SRMHEPLIAVGSDEDAPHLNKVKIYEYNENG-----RKWLKVAELPDHTDPIRDISWAPNIG-RSYHL 241 (361)
T ss_pred cceEEeecc---ccccCceEEEEcccCCccccceEEEEecCCc-----ceeeeehhcCCCCCcceeeeeccccC-Cceee
Confidence 455888883 34456788888765 4455553222 23566668888788999999986432 12334
Q ss_pred EEEEECC-CeEEEEec
Q 002318 185 YVMAVTP-TRLYSFTG 199 (936)
Q Consensus 185 ~i~ast~-~rly~f~~ 199 (936)
+.+|+.. .|+|...+
T Consensus 242 lAvA~kDgv~I~~v~~ 257 (361)
T KOG2445|consen 242 LAVATKDGVRIFKVKV 257 (361)
T ss_pred EEEeecCcEEEEEEee
Confidence 4554444 55654433
No 106
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=90.21 E-value=15 Score=39.13 Aligned_cols=149 Identities=16% Similarity=0.126 Sum_probs=100.0
Q ss_pred eeEEEEeCC--EEEEEecCCeEEEEeCCCCCceeeEcCCCCCC-ccceeEEEeCCCC-CeEEEEeecCCCccEEEEecCC
Q 002318 24 ITCMSAGND--VIVLGTSKGWLIRHDFGAGDSYDIDLSAGRPG-EQSIHKVFVDPGG-SHCIATIVGSGGAETFYTHAKW 99 (936)
Q Consensus 24 i~~l~v~~n--~l~l~~~~g~l~ridl~~~~~~~~~l~~~~~~-~~~i~~i~lDp~G-~hlli~~~~~~~g~~~Y~~~~~ 99 (936)
+.|+|++.+ +++-|..+.+|..+|.-+.. .+.+.. .+ .+=|..+-+.|+- +-.|+++. -|+.+--++...
T Consensus 108 Vlsva~s~dn~qivSGSrDkTiklwnt~g~c--k~t~~~--~~~~~WVscvrfsP~~~~p~Ivs~s--~DktvKvWnl~~ 181 (315)
T KOG0279|consen 108 VLSVAFSTDNRQIVSGSRDKTIKLWNTLGVC--KYTIHE--DSHREWVSCVRFSPNESNPIIVSAS--WDKTVKVWNLRN 181 (315)
T ss_pred eEEEEecCCCceeecCCCcceeeeeeecccE--EEEEec--CCCcCcEEEEEEcCCCCCcEEEEcc--CCceEEEEccCC
Confidence 578888764 88999999999999983332 233331 12 4679999999995 44444432 177777888766
Q ss_pred CCceeccCCCCceEEEEEecCCCCCCCCcceEEEEcCCCcEEEEEEecCCcccceeeEEeeeCCCCCceeeEEEEeeccC
Q 002318 100 SKPRVLSKLKGLVVNAVAWNRQQITEASTKEIILGTDTGQLHEMAVDEKDKREKYIKLLFELNELPEAFMGLQMETASLS 179 (936)
Q Consensus 100 ~k~k~L~klkg~~I~sVaw~~~~~~~~st~~iLiGt~~G~i~e~~i~~~~~~~~~~k~v~~l~~~~~~I~gi~~~~~~~~ 179 (936)
-+.+.----+...++.|+..++- + -+.=|.++|.++.-.+..+ |.+|.++.. .+|.++.|.
T Consensus 182 ~~l~~~~~gh~~~v~t~~vSpDG----s--lcasGgkdg~~~LwdL~~~-------k~lysl~a~-~~v~sl~fs----- 242 (315)
T KOG0279|consen 182 CQLRTTFIGHSGYVNTVTVSPDG----S--LCASGGKDGEAMLWDLNEG-------KNLYSLEAF-DIVNSLCFS----- 242 (315)
T ss_pred cchhhccccccccEEEEEECCCC----C--EEecCCCCceEEEEEccCC-------ceeEeccCC-CeEeeEEec-----
Confidence 65544221245689999999542 1 2333889999999888764 447777643 468888885
Q ss_pred CCceEEEEEECCCeEEEEe
Q 002318 180 NGTRYYVMAVTPTRLYSFT 198 (936)
Q Consensus 180 ~~~~~~i~ast~~rly~f~ 198 (936)
++++.+.+.|.+.+--|.
T Consensus 243 -pnrywL~~at~~sIkIwd 260 (315)
T KOG0279|consen 243 -PNRYWLCAATATSIKIWD 260 (315)
T ss_pred -CCceeEeeccCCceEEEe
Confidence 347777777765555564
No 107
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=90.14 E-value=4.2 Score=47.08 Aligned_cols=121 Identities=12% Similarity=0.058 Sum_probs=69.6
Q ss_pred EEEEecCCeEEEEeC-CCCCceeeEcCCCCCCccceeEEEeCCCCCeEEEE-eecCCCccEEEEecCCC-Cceecc----
Q 002318 34 IVLGTSKGWLIRHDF-GAGDSYDIDLSAGRPGEQSIHKVFVDPGGSHCIAT-IVGSGGAETFYTHAKWS-KPRVLS---- 106 (936)
Q Consensus 34 l~l~~~~g~l~ridl-~~~~~~~~~l~~~~~~~~~i~~i~lDp~G~hlli~-~~~~~~g~~~Y~~~~~~-k~k~L~---- 106 (936)
|++|-....|||++| ++-=.. |.... .+.++-+-+.|-- +||.| |. +|.+=+|..... .+..|-
T Consensus 148 ly~~gsg~evYRlNLEqGrfL~----P~~~~-~~~lN~v~in~~h-gLla~Gt~---~g~VEfwDpR~ksrv~~l~~~~~ 218 (703)
T KOG2321|consen 148 LYLVGSGSEVYRLNLEQGRFLN----PFETD-SGELNVVSINEEH-GLLACGTE---DGVVEFWDPRDKSRVGTLDAASS 218 (703)
T ss_pred EEEeecCcceEEEEcccccccc----ccccc-cccceeeeecCcc-ceEEeccc---CceEEEecchhhhhheeeecccc
Confidence 445555559999999 443222 22221 3567888887643 45554 44 677766653221 111111
Q ss_pred --CCCC----ceEEEEEecCCCCCCCCcceEEEEcCCCcEEEEEEecCCcccceeeEEeeeCCCCCceeeEEEEe
Q 002318 107 --KLKG----LVVNAVAWNRQQITEASTKEIILGTDTGQLHEMAVDEKDKREKYIKLLFELNELPEAFMGLQMET 175 (936)
Q Consensus 107 --klkg----~~I~sVaw~~~~~~~~st~~iLiGt~~G~i~e~~i~~~~~~~~~~k~v~~l~~~~~~I~gi~~~~ 175 (936)
..-| ..|+++.|.++ .-.+-+||+.|.+|.+.|-.+. +-..-.+.| +-||-.|.|..
T Consensus 219 v~s~pg~~~~~svTal~F~d~------gL~~aVGts~G~v~iyDLRa~~-pl~~kdh~~-----e~pi~~l~~~~ 281 (703)
T KOG2321|consen 219 VNSHPGGDAAPSVTALKFRDD------GLHVAVGTSTGSVLIYDLRASK-PLLVKDHGY-----ELPIKKLDWQD 281 (703)
T ss_pred cCCCccccccCcceEEEecCC------ceeEEeeccCCcEEEEEcccCC-ceeecccCC-----ccceeeecccc
Confidence 0111 35999999843 3489999999999999997651 111111112 24588888864
No 108
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=90.12 E-value=0.89 Score=47.53 Aligned_cols=72 Identities=14% Similarity=0.149 Sum_probs=54.6
Q ss_pred CCCceeEEEEe---CCEEEEEecCCeEEEEeC-CCCCce-eeEcCCCCCCccceeEEEeCCC-CCeEEEEeecCCCccEE
Q 002318 20 GRGVITCMSAG---NDVIVLGTSKGWLIRHDF-GAGDSY-DIDLSAGRPGEQSIHKVFVDPG-GSHCIATIVGSGGAETF 93 (936)
Q Consensus 20 ~~~~i~~l~v~---~n~l~l~~~~g~l~ridl-~~~~~~-~~~l~~~~~~~~~i~~i~lDp~-G~hlli~~~~~~~g~~~ 93 (936)
.-+++++++.+ ++++|.|+..|.+-.||. +...+. -+..+ ...|..+.+.|+ +.||+.|++ +|..+
T Consensus 178 ~~~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~ah-----k~~i~eV~FHpk~p~~Lft~se---dGslw 249 (319)
T KOG4714|consen 178 ALDAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVSLLKAH-----KAEIWEVHFHPKNPEHLFTCSE---DGSLW 249 (319)
T ss_pred ccccchhhhCCcccccEEEEecCCCeEEEEEcccccchHHHHHHh-----hhhhhheeccCCCchheeEecC---CCcEE
Confidence 34558888876 568899999999999999 432221 11222 467889999987 999999999 99999
Q ss_pred EEecCC
Q 002318 94 YTHAKW 99 (936)
Q Consensus 94 Y~~~~~ 99 (936)
.+..+.
T Consensus 250 ~wdas~ 255 (319)
T KOG4714|consen 250 HWDAST 255 (319)
T ss_pred EEcCCC
Confidence 887653
No 109
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=90.07 E-value=24 Score=44.53 Aligned_cols=253 Identities=13% Similarity=0.103 Sum_probs=132.0
Q ss_pred HHHchhhHHHHHHhcCC----hhhHHHHHHHHHHHHHhcCCHHHHHHHHHHhcCCCChHHHHHHhcCcChHHHHHHHHHH
Q 002318 370 VYLDMKEYAAALANCRD----PLQRDQVYLVQAEAAFATKDFHRAASFYAKINYILSFEEITLKFISVSEQDALRTFLLR 445 (936)
Q Consensus 370 ~ll~~~~f~~Al~~~~~----~~~~~~I~~~~~~~L~~~g~y~~Aa~~y~~~~~~~~~E~v~lkFl~~~~~~~L~~YL~~ 445 (936)
.+...+++++|+++|+. +...-..+...|.-+++++++.+|+.. ... -.|...... .+..|+..
T Consensus 40 ~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l---------~~~~~~~~~-~~ve~~~~ 107 (906)
T PRK14720 40 AYKSENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLL--NLI---------DSFSQNLKW-AIVEHICD 107 (906)
T ss_pred HHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhh--hhh---------hhcccccch-hHHHHHHH
Confidence 45588999999999873 123345555566677888888888776 222 112222222 45566665
Q ss_pred HhhcccCchhHHHHHHHHHHHHHHHHHHhhhhcccchhhccchHHHHHHHHHHHHHHhccccc-CC-HHHHHHHHHHcCC
Q 002318 446 KLDNLAKDDKCQITMISTWATELYLDKINRLLLEDDTALENRSSEYQSIMREFRAFLSDCKDV-LD-EATTMKLLESYGR 523 (936)
Q Consensus 446 ~l~~l~~~~~~~~~lL~~Wl~ely~~~l~~~~~e~~~~~~~~~~~~~~~~~~l~~fl~~~~~~-ld-~~tv~~ll~~~g~ 523 (936)
.+.....+.. .| --+.++|. +++.. .+...-.++.|+-..+. .= ..-+|.+-.. .
T Consensus 108 ~i~~~~~~k~----Al-~~LA~~Yd-k~g~~---------------~ka~~~yer~L~~D~~n~~aLNn~AY~~ae~--d 164 (906)
T PRK14720 108 KILLYGENKL----AL-RTLAEAYA-KLNEN---------------KKLKGVWERLVKADRDNPEIVKKLATSYEEE--D 164 (906)
T ss_pred HHHhhhhhhH----HH-HHHHHHHH-HcCCh---------------HHHHHHHHHHHhcCcccHHHHHHHHHHHHHh--h
Confidence 4433222211 11 12234442 11111 11122233333321100 00 0112222222 5
Q ss_pred hhHHHHHHHhhhhHHHHHHHHHhcccHHHHHHHHhCCC----CchhhHHhhHHHHHhH-ChHHHHHHHHccCCCCCCcch
Q 002318 524 VEELVFFASLKEQHEIVVHHYIQQGEAKKALQMLRKPA----VPIDLQYKFAPDLIML-DAYETVESWMTTNNLNPRKLI 598 (936)
Q Consensus 524 ~e~~l~~a~~~~dy~~ll~~yi~~~~~~~AL~~L~~~~----d~~~li~k~~~~Ll~~-~p~~ti~ll~~~~~ld~~~li 598 (936)
.+.++.++ ...+..|+..++|.+++++|.+.- +..+.+++.-..+... .-.+.+++ +.
T Consensus 165 L~KA~~m~------~KAV~~~i~~kq~~~~~e~W~k~~~~~~~d~d~f~~i~~ki~~~~~~~~~~~~-----------~~ 227 (906)
T PRK14720 165 KEKAITYL------KKAIYRFIKKKQYVGIEEIWSKLVHYNSDDFDFFLRIERKVLGHREFTRLVGL-----------LE 227 (906)
T ss_pred HHHHHHHH------HHHHHHHHhhhcchHHHHHHHHHHhcCcccchHHHHHHHHHHhhhccchhHHH-----------HH
Confidence 55555554 457778999999999999988752 3234444444333322 11222222 23
Q ss_pred hHhhhcCCCCCCCCChHHHHHHHHHHHhhcCCCCHhHHHHHHHHhhcCCChHHHHHHHHHhhCCCCCCCCcccCChHHHH
Q 002318 599 PAMMRYSSEPHAKNETHEVIKYLEFCVHRLHNEDPGVHNLLLSLYAKQEDDSALLRFLQCKFGKGRENGPEFFYDPKYAL 678 (936)
Q Consensus 599 ~~L~~~~~~~~~~~~~~~~~~YLe~li~~~~~~~~~~hn~ll~Ly~~~~~~~~Ll~fL~~~~~~~~~~~~~~~yd~~~aL 678 (936)
|....|... ..-+.++.+|+.+++-.+....+.++.....-.++.+.+.+-.||+-+ +..+ ..=++..++
T Consensus 228 ~l~~~y~~~----~~~~~~i~iLK~iL~~~~~n~~a~~~l~~~y~~kY~~~~~~ee~l~~s---~l~~---~~~~~~~~i 297 (906)
T PRK14720 228 DLYEPYKAL----EDWDEVIYILKKILEHDNKNNKAREELIRFYKEKYKDHSLLEDYLKMS---DIGN---NRKPVKDCI 297 (906)
T ss_pred HHHHHHhhh----hhhhHHHHHHHHHHhcCCcchhhHHHHHHHHHHHccCcchHHHHHHHh---cccc---CCccHHHHH
Confidence 444444432 134579999999998777666676666554444566667888899987 1222 123456666
Q ss_pred HHHHhc
Q 002318 679 RLCLKE 684 (936)
Q Consensus 679 rlc~~~ 684 (936)
.-+..+
T Consensus 298 ~~fek~ 303 (906)
T PRK14720 298 ADFEKN 303 (906)
T ss_pred HHHHHH
Confidence 666555
No 110
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=90.06 E-value=2.3 Score=49.37 Aligned_cols=132 Identities=13% Similarity=0.155 Sum_probs=94.2
Q ss_pred CCceeEEEEeCCEEEEEecCCeEEEEeC-CCCCcee-eEcCCCCCCccceeEEEeCCCCCeEEEEeecCCCccEEEEecC
Q 002318 21 RGVITCMSAGNDVIVLGTSKGWLIRHDF-GAGDSYD-IDLSAGRPGEQSIHKVFVDPGGSHCIATIVGSGGAETFYTHAK 98 (936)
Q Consensus 21 ~~~i~~l~v~~n~l~l~~~~g~l~ridl-~~~~~~~-~~l~~~~~~~~~i~~i~lDp~G~hlli~~~~~~~g~~~Y~~~~ 98 (936)
...|.|++-.++.+..|...|.|+..|+ .++...+ ...+ ...|-++-..+.|.++..-.+ |..++-+...
T Consensus 260 ~~rvg~laW~~~~lssGsr~~~I~~~dvR~~~~~~~~~~~H-----~qeVCgLkws~d~~~lASGgn---DN~~~Iwd~~ 331 (484)
T KOG0305|consen 260 ASRVGSLAWNSSVLSSGSRDGKILNHDVRISQHVVSTLQGH-----RQEVCGLKWSPDGNQLASGGN---DNVVFIWDGL 331 (484)
T ss_pred CceeEEEeccCceEEEecCCCcEEEEEEecchhhhhhhhcc-----cceeeeeEECCCCCeeccCCC---ccceEeccCC
Confidence 3468999999999999999999999999 6666555 3333 478999999999999888777 7777776664
Q ss_pred CCC-ceeccCCCCceEEEEEecCCCCCCCCcceEEE---EcCCCcEEEEEEecCCcccceeeEEeeeCCCCCceeeEEEE
Q 002318 99 WSK-PRVLSKLKGLVVNAVAWNRQQITEASTKEIIL---GTDTGQLHEMAVDEKDKREKYIKLLFELNELPEAFMGLQME 174 (936)
Q Consensus 99 ~~k-~k~L~klkg~~I~sVaw~~~~~~~~st~~iLi---Gt~~G~i~e~~i~~~~~~~~~~k~v~~l~~~~~~I~gi~~~ 174 (936)
... ...+...+ -.|+++||+|.+. .+|. ||.++.|..-....+. .+.. +. ..+.|++|.|.
T Consensus 332 ~~~p~~~~~~H~-aAVKA~awcP~q~------~lLAsGGGs~D~~i~fwn~~~g~----~i~~---vd-tgsQVcsL~Ws 396 (484)
T KOG0305|consen 332 SPEPKFTFTEHT-AAVKALAWCPWQS------GLLATGGGSADRCIKFWNTNTGA----RIDS---VD-TGSQVCSLIWS 396 (484)
T ss_pred CccccEEEeccc-eeeeEeeeCCCcc------CceEEcCCCcccEEEEEEcCCCc----Eecc---cc-cCCceeeEEEc
Confidence 443 33344433 4899999997652 3443 5788988887765431 1222 22 23679999997
Q ss_pred e
Q 002318 175 T 175 (936)
Q Consensus 175 ~ 175 (936)
+
T Consensus 397 k 397 (484)
T KOG0305|consen 397 K 397 (484)
T ss_pred C
Confidence 4
No 111
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=90.02 E-value=2.9 Score=44.70 Aligned_cols=148 Identities=12% Similarity=0.167 Sum_probs=92.8
Q ss_pred CceeEEEEeCCEEEEEecCCeEEEEeC--CCCCceeeEcCCCCCCccceeEEEeCCCCCeEEEEeecCCCccE--EEEec
Q 002318 22 GVITCMSAGNDVIVLGTSKGWLIRHDF--GAGDSYDIDLSAGRPGEQSIHKVFVDPGGSHCIATIVGSGGAET--FYTHA 97 (936)
Q Consensus 22 ~~i~~l~v~~n~l~l~~~~g~l~ridl--~~~~~~~~~l~~~~~~~~~i~~i~lDp~G~hlli~~~~~~~g~~--~Y~~~ 97 (936)
+.+-|+.|..-++++|+.+..|..++| .|.+..+++-|.+-+ .+-.-+|-|..|. +|=+.+ |-+ .|++.
T Consensus 157 eRvYa~Dv~~pm~vVata~r~i~vynL~n~~te~k~~~SpLk~Q--~R~va~f~d~~~~-alGsiE----Grv~iq~id~ 229 (347)
T KOG0647|consen 157 ERVYAADVLYPMAVVATAERHIAVYNLENPPTEFKRIESPLKWQ--TRCVACFQDKDGF-ALGSIE----GRVAIQYIDD 229 (347)
T ss_pred ceeeehhccCceeEEEecCCcEEEEEcCCCcchhhhhcCcccce--eeEEEEEecCCce-Eeeeec----ceEEEEecCC
Confidence 456789999999999999999999999 556666777775522 2344567787776 444444 644 57765
Q ss_pred CCCC------cee----ccCCCCceEEEEEecCCCCCCCCcceEEEEcCCCcEEEEEEecCCcccceeeEEeeeCCCCCc
Q 002318 98 KWSK------PRV----LSKLKGLVVNAVAWNRQQITEASTKEIILGTDTGQLHEMAVDEKDKREKYIKLLFELNELPEA 167 (936)
Q Consensus 98 ~~~k------~k~----L~klkg~~I~sVaw~~~~~~~~st~~iLiGt~~G~i~e~~i~~~~~~~~~~k~v~~l~~~~~~ 167 (936)
..++ .+. ... +=+.|.+|+|++. .|.|+..+++|..-.-.=+.+. .+|. .+..+.|
T Consensus 230 ~~~~~nFtFkCHR~~~~~~~-~VYaVNsi~FhP~------hgtlvTaGsDGtf~FWDkdar~----kLk~---s~~~~qp 295 (347)
T KOG0647|consen 230 PNPKDNFTFKCHRSTNSVND-DVYAVNSIAFHPV------HGTLVTAGSDGTFSFWDKDART----KLKT---SETHPQP 295 (347)
T ss_pred CCccCceeEEEeccCCCCCC-ceEEecceEeecc------cceEEEecCCceEEEecchhhh----hhhc---cCcCCCc
Confidence 4222 111 111 2368999999953 4689999999965443222210 1222 2222467
Q ss_pred eeeEEEEeeccCCCceEEEEEECCCeEEEEec
Q 002318 168 FMGLQMETASLSNGTRYYVMAVTPTRLYSFTG 199 (936)
Q Consensus 168 I~gi~~~~~~~~~~~~~~i~ast~~rly~f~~ 199 (936)
|+.-.+.+ +..+++.|.. |+|.-
T Consensus 296 Itcc~fn~-----~G~ifaYA~g----YDWSk 318 (347)
T KOG0647|consen 296 ITCCSFNR-----NGSIFAYALG----YDWSK 318 (347)
T ss_pred cceeEecC-----CCCEEEEEee----ccccc
Confidence 98888763 2357777654 66753
No 112
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=89.68 E-value=4.9 Score=47.55 Aligned_cols=90 Identities=17% Similarity=0.190 Sum_probs=63.7
Q ss_pred HHHHHHHcCChhHHHHHHHhhhhHHHHHHHHHhcccHHHHHHHHhCCC--CchhhHHhhHHHHHhH-ChHHHHHHHHccC
Q 002318 514 TMKLLESYGRVEELVFFASLKEQHEIVVHHYIQQGEAKKALQMLRKPA--VPIDLQYKFAPDLIML-DAYETVESWMTTN 590 (936)
Q Consensus 514 v~~ll~~~g~~e~~l~~a~~~~dy~~ll~~yi~~~~~~~AL~~L~~~~--d~~~li~k~~~~Ll~~-~p~~ti~ll~~~~ 590 (936)
+.+.+.+-|.=++++.-.-..++....+.-..+..+|.+|.++-.+.+ ....++-+++..|+.. ...++|++--+.+
T Consensus 858 ~a~mf~svGMC~qAV~a~Lr~s~pkaAv~tCv~LnQW~~avelaq~~~l~qv~tliak~aaqll~~~~~~eaIe~~Rka~ 937 (1189)
T KOG2041|consen 858 MADMFTSVGMCDQAVEAYLRRSLPKAAVHTCVELNQWGEAVELAQRFQLPQVQTLIAKQAAQLLADANHMEAIEKDRKAG 937 (1189)
T ss_pred HHHHHHhhchHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHhhcchHHHHHHhhhcc
Confidence 345666667777777766666777777777778889999999887754 2246888999998864 3456676654443
Q ss_pred -CCCCCcchhHhhh
Q 002318 591 -NLNPRKLIPAMMR 603 (936)
Q Consensus 591 -~ld~~~li~~L~~ 603 (936)
.+|..+|+..+..
T Consensus 938 ~~~daarll~qmae 951 (1189)
T KOG2041|consen 938 RHLDAARLLSQMAE 951 (1189)
T ss_pred cchhHHHHHHHHhH
Confidence 6888888777654
No 113
>COG5243 HRD1 HRD ubiquitin ligase complex, ER membrane component [Posttranslational modification, protein turnover, chaperones]
Probab=89.64 E-value=0.78 Score=49.87 Aligned_cols=100 Identities=14% Similarity=0.270 Sum_probs=50.9
Q ss_pred CCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccEeecccccccccchhhhhccccccccc
Q 002318 775 FPDFALIDDFKEAICSSLDDYNKQIEQLKQEMNDATHGADNIRNDISALAQRYAVIDRDEDCGVCRRKILVAGRDYRMAR 854 (936)
Q Consensus 775 ~p~~~~I~~~Kd~I~~~L~~y~~~i~~l~~~m~~~~~~~~~i~~~i~~~~~r~~~i~~~~~C~~C~k~L~~~~~~~~~~~ 854 (936)
+|--++|--+|+..--.+.-|+.-.+..+ ..+...++..-+......- .-..+..|.+|-.-+.-++-.. ..+
T Consensus 235 ~~~r~Pi~l~r~~~t~~~AL~~~i~~~~~-----~~r~~kdl~~~~~t~t~eq-l~n~D~~C~ICmde~~h~~~~~-~~~ 307 (491)
T COG5243 235 PYVRVPIYLIRQMYTCFYALFRRIREHAR-----FRRATKDLNAMYPTATEEQ-LTNSDRTCTICMDEMFHPDHEP-LPR 307 (491)
T ss_pred cchhchHHHHHHHHHHHHHHHHHHHHHHH-----HHHHhhHHHhhcchhhhhh-hcCCCCeEEEecccccCCCCcc-Ccc
Confidence 33446788888877666655543222222 1112222221111110000 0245678999998866543210 000
Q ss_pred ccCCCCCCCCEEEEcCCChhHHHhHHHHHhhc
Q 002318 855 GYASVGPMAPFYVFPCGHAFHAQCLIAHVTQC 886 (936)
Q Consensus 855 ~~~~~~~~~~fvvFpCgH~fH~~CL~~~~~~~ 886 (936)
+.+..==..||||.+|-.||.+.+...
T Consensus 308 -----~~~~~pKrLpCGHilHl~CLknW~ERq 334 (491)
T COG5243 308 -----GLDMTPKRLPCGHILHLHCLKNWLERQ 334 (491)
T ss_pred -----cccCCcccccccceeeHHHHHHHHHhc
Confidence 111112356999999999999987443
No 114
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=89.63 E-value=6.2 Score=44.00 Aligned_cols=117 Identities=10% Similarity=0.049 Sum_probs=76.3
Q ss_pred cCCeEEEEeC-CCCCceeeEcCCCCCCccceeEEEeCCCCCeEEEEeecCCCccEEEEecCCCCceec----cCCCCceE
Q 002318 39 SKGWLIRHDF-GAGDSYDIDLSAGRPGEQSIHKVFVDPGGSHCIATIVGSGGAETFYTHAKWSKPRVL----SKLKGLVV 113 (936)
Q Consensus 39 ~~g~l~ridl-~~~~~~~~~l~~~~~~~~~i~~i~lDp~G~hlli~~~~~~~g~~~Y~~~~~~k~k~L----~klkg~~I 113 (936)
..++|--||. .+..+.++++. ++|+.+-+.+.|.+++.|+. +-..=-+......++.. .-.-+++.
T Consensus 320 ~DkkvRfwD~Rs~~~~~sv~~g------g~vtSl~ls~~g~~lLsssR---Ddtl~viDlRt~eI~~~~sA~g~k~asDw 390 (459)
T KOG0288|consen 320 FDKKVRFWDIRSADKTRSVPLG------GRVTSLDLSMDGLELLSSSR---DDTLKVIDLRTKEIRQTFSAEGFKCASDW 390 (459)
T ss_pred cccceEEEeccCCceeeEeecC------cceeeEeeccCCeEEeeecC---CCceeeeecccccEEEEeecccccccccc
Confidence 4567777798 66666666553 69999999999999999976 33322233333223321 11135677
Q ss_pred EEEEecCCCCCCCCcceEEEEcCCCcEEEEEEecCCcccceeeEEeeeCCCCCceeeEEEEe
Q 002318 114 NAVAWNRQQITEASTKEIILGTDTGQLHEMAVDEKDKREKYIKLLFELNELPEAFMGLQMET 175 (936)
Q Consensus 114 ~sVaw~~~~~~~~st~~iLiGt~~G~i~e~~i~~~~~~~~~~k~v~~l~~~~~~I~gi~~~~ 175 (936)
+.|.|.|. ..-++-|+.+|.||.-.+..++ +..+..++..+..|+.+.|..
T Consensus 391 trvvfSpd------~~YvaAGS~dgsv~iW~v~tgK-----lE~~l~~s~s~~aI~s~~W~~ 441 (459)
T KOG0288|consen 391 TRVVFSPD------GSYVAAGSADGSVYIWSVFTGK-----LEKVLSLSTSNAAITSLSWNP 441 (459)
T ss_pred ceeEECCC------CceeeeccCCCcEEEEEccCce-----EEEEeccCCCCcceEEEEEcC
Confidence 78888743 2367778999999998887652 223335555444699999974
No 115
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=89.60 E-value=10 Score=45.11 Aligned_cols=50 Identities=18% Similarity=0.226 Sum_probs=43.3
Q ss_pred HHHHchhhHHHHHHhcCCh----hhHHHHHHHHHHHHHhcCCHHHHHHHHHHhc
Q 002318 369 KVYLDMKEYAAALANCRDP----LQRDQVYLVQAEAAFATKDFHRAASFYAKIN 418 (936)
Q Consensus 369 ~~ll~~~~f~~Al~~~~~~----~~~~~I~~~~~~~L~~~g~y~~Aa~~y~~~~ 418 (936)
.++.+.|+|++||++.++. ..+..+....|+.|+.-|++++|...|....
T Consensus 12 ~il~e~g~~~~AL~~L~~~~~~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li 65 (517)
T PF12569_consen 12 SILEEAGDYEEALEHLEKNEKQILDKLAVLEKRAELLLKLGRKEEAEKIYRELI 65 (517)
T ss_pred HHHHHCCCHHHHHHHHHhhhhhCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4578899999999997642 2567899999999999999999999999876
No 116
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=89.33 E-value=17 Score=40.01 Aligned_cols=149 Identities=11% Similarity=0.073 Sum_probs=93.9
Q ss_pred eCCEEEEEecCCeEEEEeC-CCCCceeeEcCCCCCCccceeEEEeCCCCCeEEEEeecCCCccEEEEecCCCCceeccCC
Q 002318 30 GNDVIVLGTSKGWLIRHDF-GAGDSYDIDLSAGRPGEQSIHKVFVDPGGSHCIATIVGSGGAETFYTHAKWSKPRVLSKL 108 (936)
Q Consensus 30 ~~n~l~l~~~~g~l~ridl-~~~~~~~~~l~~~~~~~~~i~~i~lDp~G~hlli~~~~~~~g~~~Y~~~~~~k~k~L~kl 108 (936)
.++.+.=+....+|..+|. .+-.+..++-| .+=|+-+-+...|.-+..|++ +..+-.+.....+.|.+-+-
T Consensus 204 ~gd~ilS~srD~tik~We~~tg~cv~t~~~h-----~ewvr~v~v~~DGti~As~s~---dqtl~vW~~~t~~~k~~lR~ 275 (406)
T KOG0295|consen 204 LGDHILSCSRDNTIKAWECDTGYCVKTFPGH-----SEWVRMVRVNQDGTIIASCSN---DQTLRVWVVATKQCKAELRE 275 (406)
T ss_pred cCCeeeecccccceeEEecccceeEEeccCc-----hHhEEEEEecCCeeEEEecCC---CceEEEEEeccchhhhhhhc
Confidence 4567777778889999999 66666666554 234444545555665666665 66666677666666676655
Q ss_pred CCceEEEEEecCCCCC--------CCCcceEEE-EcCCCcEEEEEEecCCcccceeeEEeeeCCCCCceeeEEEEeeccC
Q 002318 109 KGLVVNAVAWNRQQIT--------EASTKEIIL-GTDTGQLHEMAVDEKDKREKYIKLLFELNELPEAFMGLQMETASLS 179 (936)
Q Consensus 109 kg~~I~sVaw~~~~~~--------~~st~~iLi-Gt~~G~i~e~~i~~~~~~~~~~k~v~~l~~~~~~I~gi~~~~~~~~ 179 (936)
.-++|++|+|-|.... +++.+++|. |..|+.|=.-++.. .+.|++|.+-..=|.|+.+..
T Consensus 276 hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~t-------g~cL~tL~ghdnwVr~~af~p---- 344 (406)
T KOG0295|consen 276 HEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVST-------GMCLFTLVGHDNWVRGVAFSP---- 344 (406)
T ss_pred cccceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEeccC-------CeEEEEEecccceeeeeEEcC----
Confidence 6689999999865421 112233444 45566655554433 256677764334599999873
Q ss_pred CCceEEEEEECCCeEEEEe
Q 002318 180 NGTRYYVMAVTPTRLYSFT 198 (936)
Q Consensus 180 ~~~~~~i~ast~~rly~f~ 198 (936)
..+|++-++.+..|--|.
T Consensus 345 -~Gkyi~ScaDDktlrvwd 362 (406)
T KOG0295|consen 345 -GGKYILSCADDKTLRVWD 362 (406)
T ss_pred -CCeEEEEEecCCcEEEEE
Confidence 237888878766665554
No 117
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=89.33 E-value=6.2 Score=39.33 Aligned_cols=96 Identities=16% Similarity=0.122 Sum_probs=72.1
Q ss_pred HHHHHHHHHhhcCCCCHhHHHHHHHHhhcCCChHHHHHHHHHhhCCCCCCCCcccCChHHHHHHHHhcCc----ceeeeh
Q 002318 617 VIKYLEFCVHRLHNEDPGVHNLLLSLYAKQEDDSALLRFLQCKFGKGRENGPEFFYDPKYALRLCLKEKR----MRACVH 692 (936)
Q Consensus 617 ~~~YLe~li~~~~~~~~~~hn~ll~Ly~~~~~~~~Ll~fL~~~~~~~~~~~~~~~yd~~~aLrlc~~~~~----~~~~v~ 692 (936)
.+.|+..+....-..++.++..++.+.++.+....|..||+.. . ..-...-|..++.-.+. .+-..-
T Consensus 13 llEYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~qllq~~---V------i~DSk~lA~~LLs~~~~~~~~~Ql~lD 83 (167)
T PF07035_consen 13 LLEYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQLHQLLQYH---V------IPDSKPLACQLLSLGNQYPPAYQLGLD 83 (167)
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHhhc---c------cCCcHHHHHHHHHhHccChHHHHHHHH
Confidence 5567777766655567889999999999977667888888876 1 22345567777655443 445566
Q ss_pred hhhccc-cHHHHHHHHHh-cCHHHHHHHhhc
Q 002318 693 IYGMMS-MHEEAVALALQ-VDPELAMAEADK 721 (936)
Q Consensus 693 L~~~~g-~~~eAl~l~l~-~di~lA~~~a~~ 721 (936)
.+.|+| .|++-+++.|. +++-.|..|+.+
T Consensus 84 MLkRL~~~~~~iievLL~~g~vl~ALr~ar~ 114 (167)
T PF07035_consen 84 MLKRLGTAYEEIIEVLLSKGQVLEALRYARQ 114 (167)
T ss_pred HHHHhhhhHHHHHHHHHhCCCHHHHHHHHHH
Confidence 788999 89999998888 899999999965
No 118
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=89.31 E-value=20 Score=43.21 Aligned_cols=155 Identities=12% Similarity=0.148 Sum_probs=99.2
Q ss_pred CCCceeEEEEeCC--EEEEEecCCeEEEEeC-CCCCceeeEcCCCCCCccceeEEEeCCCCCeEEEEeecCCCccEEEEe
Q 002318 20 GRGVITCMSAGND--VIVLGTSKGWLIRHDF-GAGDSYDIDLSAGRPGEQSIHKVFVDPGGSHCIATIVGSGGAETFYTH 96 (936)
Q Consensus 20 ~~~~i~~l~v~~n--~l~l~~~~g~l~ridl-~~~~~~~~~l~~~~~~~~~i~~i~lDp~G~hlli~~~~~~~g~~~Y~~ 96 (936)
-+.+|++++.+++ ++...-+.|..+.+.+ ...-...+.+. .+|..|-..|+|....|+.. ...-.++
T Consensus 54 ~~~NI~~ialSp~g~lllavdE~g~~~lvs~~~r~Vlh~f~fk------~~v~~i~fSPng~~fav~~g----n~lqiw~ 123 (893)
T KOG0291|consen 54 TRYNITRIALSPDGTLLLAVDERGRALLVSLLSRSVLHRFNFK------RGVGAIKFSPNGKFFAVGCG----NLLQIWH 123 (893)
T ss_pred cCCceEEEEeCCCceEEEEEcCCCcEEEEecccceeeEEEeec------CccceEEECCCCcEEEEEec----ceeEEEe
Confidence 4567999999998 7777778899999888 54444455543 56888999999998888765 2222222
Q ss_pred c-C-----CCCceeccCCCC--ceEEEEEecCCCCCCCCcceEEEEcCCCcEEEEEEecCCcccceeeEEeeeCCCCCce
Q 002318 97 A-K-----WSKPRVLSKLKG--LVVNAVAWNRQQITEASTKEIILGTDTGQLHEMAVDEKDKREKYIKLLFELNELPEAF 168 (936)
Q Consensus 97 ~-~-----~~k~k~L~klkg--~~I~sVaw~~~~~~~~st~~iLiGt~~G~i~e~~i~~~~~~~~~~k~v~~l~~~~~~I 168 (936)
. + .+.+..-....| .+|+|+.|.. +++-|++|+++-..-...+++.+ .++. |.+.+-..+|
T Consensus 124 ~P~~~~~~~~pFvl~r~~~g~fddi~si~Ws~------DSr~l~~gsrD~s~rl~~v~~~k----~~~~-~~l~gHkd~V 192 (893)
T KOG0291|consen 124 APGEIKNEFNPFVLHRTYLGHFDDITSIDWSD------DSRLLVTGSRDLSARLFGVDGNK----NLFT-YALNGHKDYV 192 (893)
T ss_pred cCcchhcccCcceEeeeecCCccceeEEEecc------CCceEEeccccceEEEEEecccc----ccce-EeccCCCcce
Confidence 2 1 222222223344 4899999983 35678888888766666665432 1222 4555544678
Q ss_pred eeEEEEeeccCCCceEEEEEECCCeEEEEecC
Q 002318 169 MGLQMETASLSNGTRYYVMAVTPTRLYSFTGF 200 (936)
Q Consensus 169 ~gi~~~~~~~~~~~~~~i~ast~~rly~f~~~ 200 (936)
.+-.+.. + ..-++.++-..-++.|...
T Consensus 193 vacfF~~----~-~~~l~tvskdG~l~~W~~~ 219 (893)
T KOG0291|consen 193 VACFFGA----N-SLDLYTVSKDGALFVWTCD 219 (893)
T ss_pred EEEEecc----C-cceEEEEecCceEEEEEec
Confidence 8877763 2 2345555666777778654
No 119
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=89.24 E-value=26 Score=42.91 Aligned_cols=74 Identities=9% Similarity=0.008 Sum_probs=46.2
Q ss_pred hhHHHHHHhcCC-------hhhHHHHHHHHHHHHHhcCCHHHHHHHHHHhcCCC-----ChHHHHHHhcCcChHHHHHHH
Q 002318 375 KEYAAALANCRD-------PLQRDQVYLVQAEAAFATKDFHRAASFYAKINYIL-----SFEEITLKFISVSEQDALRTF 442 (936)
Q Consensus 375 ~~f~~Al~~~~~-------~~~~~~I~~~~~~~L~~~g~y~~Aa~~y~~~~~~~-----~~E~v~lkFl~~~~~~~L~~Y 442 (936)
+.|++|++..+. .......+...|..++..|++++|...|.+..... .|-.....+...++.+.-..+
T Consensus 308 ~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~ 387 (615)
T TIGR00990 308 ESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELDPRVTQSYIKRASMNLELGDPDKAEED 387 (615)
T ss_pred hhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHH
Confidence 578888877542 12334567788999999999999999999875211 112223334455555555555
Q ss_pred HHHHhh
Q 002318 443 LLRKLD 448 (936)
Q Consensus 443 L~~~l~ 448 (936)
+..-+.
T Consensus 388 ~~~al~ 393 (615)
T TIGR00990 388 FDKALK 393 (615)
T ss_pred HHHHHH
Confidence 554444
No 120
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=89.21 E-value=8.4 Score=44.28 Aligned_cols=133 Identities=14% Similarity=0.161 Sum_probs=84.9
Q ss_pred eeEEEEeC--CEEEEEecCCeEEEEeC-CCCCceeeEcCCCCCCccceeEEEeCCCCCeEEEEeecCCCccEEEEecCCC
Q 002318 24 ITCMSAGN--DVIVLGTSKGWLIRHDF-GAGDSYDIDLSAGRPGEQSIHKVFVDPGGSHCIATIVGSGGAETFYTHAKWS 100 (936)
Q Consensus 24 i~~l~v~~--n~l~l~~~~g~l~ridl-~~~~~~~~~l~~~~~~~~~i~~i~lDp~G~hlli~~~~~~~g~~~Y~~~~~~ 100 (936)
.+|+||++ +..++|-..|.|+.+-| ..+..++..+..- .++|+.|-..|.|.++.+|=. ++++.-+...+.
T Consensus 446 ~s~vAv~~~~~~vaVGG~Dgkvhvysl~g~~l~ee~~~~~h---~a~iT~vaySpd~~yla~~Da---~rkvv~yd~~s~ 519 (603)
T KOG0318|consen 446 SSAVAVSPDGSEVAVGGQDGKVHVYSLSGDELKEEAKLLEH---RAAITDVAYSPDGAYLAAGDA---SRKVVLYDVASR 519 (603)
T ss_pred cceEEEcCCCCEEEEecccceEEEEEecCCcccceeeeecc---cCCceEEEECCCCcEEEEecc---CCcEEEEEcccC
Confidence 36677765 47899999999999999 4343444332211 368999999999998888766 677765555554
Q ss_pred CceeccC--CCCceEEEEEecCCCCCCCCcceEEEEcCCCcEEEEEEecCCcccceeeEEeeeCCCCCceeeEEEEe
Q 002318 101 KPRVLSK--LKGLVVNAVAWNRQQITEASTKEIILGTDTGQLHEMAVDEKDKREKYIKLLFELNELPEAFMGLQMET 175 (936)
Q Consensus 101 k~k~L~k--lkg~~I~sVaw~~~~~~~~st~~iLiGt~~G~i~e~~i~~~~~~~~~~k~v~~l~~~~~~I~gi~~~~ 175 (936)
.++. +. +.--.|.||||+|.+ ..+-.|+-+-.|+-+.++. +.++++.- .-. +..|+++.|..
T Consensus 520 ~~~~-~~w~FHtakI~~~aWsP~n------~~vATGSlDt~Viiysv~k---P~~~i~ik-nAH--~~gVn~v~wld 583 (603)
T KOG0318|consen 520 EVKT-NRWAFHTAKINCVAWSPNN------KLVATGSLDTNVIIYSVKK---PAKHIIIK-NAH--LGGVNSVAWLD 583 (603)
T ss_pred ceec-ceeeeeeeeEEEEEeCCCc------eEEEeccccceEEEEEccC---hhhheEec-ccc--ccCceeEEEec
Confidence 4422 22 123479999999542 2566676777777776643 33342211 111 23389999973
No 121
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=89.19 E-value=6.2 Score=48.87 Aligned_cols=132 Identities=14% Similarity=0.176 Sum_probs=82.0
Q ss_pred cCCeEEEEeC-CCCCceeeEcCCCCCCccceeEEEeCC-----CCCeEEEEeecCCCccEEEEecCCCCceec-cCC---
Q 002318 39 SKGWLIRHDF-GAGDSYDIDLSAGRPGEQSIHKVFVDP-----GGSHCIATIVGSGGAETFYTHAKWSKPRVL-SKL--- 108 (936)
Q Consensus 39 ~~g~l~ridl-~~~~~~~~~l~~~~~~~~~i~~i~lDp-----~G~hlli~~~~~~~g~~~Y~~~~~~k~k~L-~kl--- 108 (936)
..+.||++|| .+.-|++..++. +.+|..+.-+. +....+++.+ +-..|-+.......+.+ ...
T Consensus 502 ~~~~ly~mDLe~GKVV~eW~~~~----~~~v~~~~p~~K~aqlt~e~tflGls---~n~lfriDpR~~~~k~v~~~~k~Y 574 (794)
T PF08553_consen 502 NPNKLYKMDLERGKVVEEWKVHD----DIPVVDIAPDSKFAQLTNEQTFLGLS---DNSLFRIDPRLSGNKLVDSQSKQY 574 (794)
T ss_pred CCCceEEEecCCCcEEEEeecCC----CcceeEecccccccccCCCceEEEEC---CCceEEeccCCCCCceeecccccc
Confidence 5688999999 788888888874 23467766653 2455677776 56666666433221111 011
Q ss_pred -CCceEEEEEecCCCCCCCCcceEEEEcCCCcEEEEEEecCCcccceeeEEeeeCCCCCceeeEEEEeeccCCCceEEEE
Q 002318 109 -KGLVVNAVAWNRQQITEASTKEIILGTDTGQLHEMAVDEKDKREKYIKLLFELNELPEAFMGLQMETASLSNGTRYYVM 187 (936)
Q Consensus 109 -kg~~I~sVaw~~~~~~~~st~~iLiGt~~G~i~e~~i~~~~~~~~~~k~v~~l~~~~~~I~gi~~~~~~~~~~~~~~i~ 187 (936)
.+...+|+|=. ..|.|.+|+.+|.|=.+.=. -+..|+. +|+-..||+||-+.. + +-.|+
T Consensus 575 ~~~~~Fs~~aTt-------~~G~iavgs~~G~IRLyd~~-----g~~AKT~--lp~lG~pI~~iDvt~-----D-Gkwil 634 (794)
T PF08553_consen 575 SSKNNFSCFATT-------EDGYIAVGSNKGDIRLYDRL-----GKRAKTA--LPGLGDPIIGIDVTA-----D-GKWIL 634 (794)
T ss_pred ccCCCceEEEec-------CCceEEEEeCCCcEEeeccc-----chhhhhc--CCCCCCCeeEEEecC-----C-CcEEE
Confidence 23455555543 35899999999988766411 1235664 555347899999974 1 34566
Q ss_pred EECCCeEEEE
Q 002318 188 AVTPTRLYSF 197 (936)
Q Consensus 188 ast~~rly~f 197 (936)
|||.+-|.-+
T Consensus 635 aTc~tyLlLi 644 (794)
T PF08553_consen 635 ATCKTYLLLI 644 (794)
T ss_pred EeecceEEEE
Confidence 7887766633
No 122
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=89.18 E-value=3.6 Score=47.17 Aligned_cols=86 Identities=19% Similarity=0.381 Sum_probs=53.5
Q ss_pred CCceeEEEEeC-CEEEEEecCCeEEEEeC-CCCCceeeEcCCCCCCccceeEEEeCCCCCeEEEEeecCCCccEEEEecC
Q 002318 21 RGVITCMSAGN-DVIVLGTSKGWLIRHDF-GAGDSYDIDLSAGRPGEQSIHKVFVDPGGSHCIATIVGSGGAETFYTHAK 98 (936)
Q Consensus 21 ~~~i~~l~v~~-n~l~l~~~~g~l~ridl-~~~~~~~~~l~~~~~~~~~i~~i~lDp~G~hlli~~~~~~~g~~~Y~~~~ 98 (936)
++.|++++.+| +++++|..+|.|..||+ +|.-+....+- .
T Consensus 86 ~g~vtal~~S~iGFvaigy~~G~l~viD~RGPavI~~~~i~------~-------------------------------- 127 (395)
T PF08596_consen 86 QGPVTALKNSDIGFVAIGYESGSLVVIDLRGPAVIYNENIR------E-------------------------------- 127 (395)
T ss_dssp S-SEEEEEE-BTSEEEEEETTSEEEEEETTTTEEEEEEEGG------G--------------------------------
T ss_pred CCcEeEEecCCCcEEEEEecCCcEEEEECCCCeEEeecccc------c--------------------------------
Confidence 36799999965 69999999999999999 65543322221 0
Q ss_pred CCCceeccCCCCceEEEEEecCCCC--CCCCcceEEEEcCCCcEEEEEEecC
Q 002318 99 WSKPRVLSKLKGLVVNAVAWNRQQI--TEASTKEIILGTDTGQLHEMAVDEK 148 (936)
Q Consensus 99 ~~k~k~L~klkg~~I~sVaw~~~~~--~~~st~~iLiGt~~G~i~e~~i~~~ 148 (936)
+.+++.++..|+++.|.--.. ...++-.+++||+.|.++-+.|.+.
T Consensus 128 ----~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L~vGTn~G~v~~fkIlp~ 175 (395)
T PF08596_consen 128 ----SFLSKSSSSYVTSIEFSVMTLGGDGYSSICLLVGTNSGNVLTFKILPS 175 (395)
T ss_dssp ------T-SS----EEEEEEEEEE-TTSSSEEEEEEEEETTSEEEEEEEEE-
T ss_pred ----cccccccccCeeEEEEEEEecCCCcccceEEEEEeCCCCEEEEEEecC
Confidence 123333556677777752111 2235567889999999999998753
No 123
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=89.06 E-value=6.9 Score=45.41 Aligned_cols=107 Identities=14% Similarity=0.248 Sum_probs=77.3
Q ss_pred ceeEEEEeCCEEEEEecCCeEEEEeC-CCCCceeeEcCCC---CC---CccceeEEEeCCCCCeEEEEeecCCCccEEEE
Q 002318 23 VITCMSAGNDVIVLGTSKGWLIRHDF-GAGDSYDIDLSAG---RP---GEQSIHKVFVDPGGSHCIATIVGSGGAETFYT 95 (936)
Q Consensus 23 ~i~~l~v~~n~l~l~~~~g~l~ridl-~~~~~~~~~l~~~---~~---~~~~i~~i~lDp~G~hlli~~~~~~~g~~~Y~ 95 (936)
+.+.+.-.+..++.|+.+|.|=-||. ..+.+..++++.. .+ ....|+-+-++-.|-|+.|-|. +|.+|..
T Consensus 179 N~v~in~~hgLla~Gt~~g~VEfwDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts---~G~v~iy 255 (703)
T KOG2321|consen 179 NVVSINEEHGLLACGTEDGVVEFWDPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTS---TGSVLIY 255 (703)
T ss_pred eeeeecCccceEEecccCceEEEecchhhhhheeeecccccCCCccccccCcceEEEecCCceeEEeecc---CCcEEEE
Confidence 34444555689999999999999999 8888877776644 11 1246899999888999999998 8999888
Q ss_pred ecCCCCceeccCC-CCceEEEEEecCCCCCCCCcceEEEEcCC
Q 002318 96 HAKWSKPRVLSKL-KGLVVNAVAWNRQQITEASTKEIILGTDT 137 (936)
Q Consensus 96 ~~~~~k~k~L~kl-kg~~I~sVaw~~~~~~~~st~~iLiGt~~ 137 (936)
.....++-.+.+- -+.+|..+.|.+. +++.-|+.+.+
T Consensus 256 DLRa~~pl~~kdh~~e~pi~~l~~~~~-----~~q~~v~S~Dk 293 (703)
T KOG2321|consen 256 DLRASKPLLVKDHGYELPIKKLDWQDT-----DQQNKVVSMDK 293 (703)
T ss_pred EcccCCceeecccCCccceeeeccccc-----CCCceEEecch
Confidence 7777766554331 2369999999843 33455554443
No 124
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=89.05 E-value=37 Score=36.79 Aligned_cols=166 Identities=11% Similarity=0.135 Sum_probs=100.8
Q ss_pred HHhhcCCCceeEEEEeCCEEEEE--ecCCeEEEEeC-CCCCceeeEcCCCC-----------------------------
Q 002318 15 RYAAKGRGVITCMSAGNDVIVLG--TSKGWLIRHDF-GAGDSYDIDLSAGR----------------------------- 62 (936)
Q Consensus 15 ~~~~~~~~~i~~l~v~~n~l~l~--~~~g~l~ridl-~~~~~~~~~l~~~~----------------------------- 62 (936)
+.|....+.|+++..+.+=.++. .++.+|..+|. ++..+..|.-++..
T Consensus 8 k~f~~~~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~~~ti~skkyG~~~~~Fth~~~~~i~sStk~d~tIryLsl 87 (311)
T KOG1446|consen 8 KVFRETNGKINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQVKTINSKKYGVDLACFTHHSNTVIHSSTKEDDTIRYLSL 87 (311)
T ss_pred cccccCCCceeEEEecCCCCEEEEecCCCeEEEEEcCCCceeeEeecccccccEEEEecCCceEEEccCCCCCceEEEEe
Confidence 44455567899999987744443 46668888899 77776544433220
Q ss_pred ----------CCccceeEEEeCCCCCeEEEEeecCCCccEEEEecCCCCceeccCCCCceEEEEEecCCCCCCCCcceEE
Q 002318 63 ----------PGEQSIHKVFVDPGGSHCIATIVGSGGAETFYTHAKWSKPRVLSKLKGLVVNAVAWNRQQITEASTKEII 132 (936)
Q Consensus 63 ----------~~~~~i~~i~lDp~G~hlli~~~~~~~g~~~Y~~~~~~k~k~L~klkg~~I~sVaw~~~~~~~~st~~iL 132 (936)
+-..+|+.|-+.|.+.-.+.++. |..+.+|..+.++..-+..+.+.+| +|+++.. -=|.
T Consensus 88 ~dNkylRYF~GH~~~V~sL~~sP~~d~FlS~S~---D~tvrLWDlR~~~cqg~l~~~~~pi--~AfDp~G------LifA 156 (311)
T KOG1446|consen 88 HDNKYLRYFPGHKKRVNSLSVSPKDDTFLSSSL---DKTVRLWDLRVKKCQGLLNLSGRPI--AAFDPEG------LIFA 156 (311)
T ss_pred ecCceEEEcCCCCceEEEEEecCCCCeEEeccc---CCeEEeeEecCCCCceEEecCCCcc--eeECCCC------cEEE
Confidence 00368888999998876666666 8889999988877777766666665 4688421 1344
Q ss_pred EEcCCCcEEEEEEecCCcccceeeEEeeeCC-CCCceeeEEEEeeccCCCceEEEEEECCCeEEEEec
Q 002318 133 LGTDTGQLHEMAVDEKDKREKYIKLLFELNE-LPEAFMGLQMETASLSNGTRYYVMAVTPTRLYSFTG 199 (936)
Q Consensus 133 iGt~~G~i~e~~i~~~~~~~~~~k~v~~l~~-~~~~I~gi~~~~~~~~~~~~~~i~ast~~rly~f~~ 199 (936)
+|...+.|-.+.+..- ++.-.+.+.+++ .....++|++. ++.+++++-|+...+|-+.+
T Consensus 157 ~~~~~~~IkLyD~Rs~---dkgPF~tf~i~~~~~~ew~~l~FS-----~dGK~iLlsT~~s~~~~lDA 216 (311)
T KOG1446|consen 157 LANGSELIKLYDLRSF---DKGPFTTFSITDNDEAEWTDLEFS-----PDGKSILLSTNASFIYLLDA 216 (311)
T ss_pred EecCCCeEEEEEeccc---CCCCceeEccCCCCccceeeeEEc-----CCCCEEEEEeCCCcEEEEEc
Confidence 4544445555555322 111223334431 12347777776 44467777555666664443
No 125
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=88.53 E-value=0.98 Score=36.95 Aligned_cols=49 Identities=10% Similarity=0.293 Sum_probs=40.7
Q ss_pred HHHchhhHHHHHHhcCC----hhhHHHHHHHHHHHHHhcCCHHHHHHHHHHhc
Q 002318 370 VYLDMKEYAAALANCRD----PLQRDQVYLVQAEAAFATKDFHRAASFYAKIN 418 (936)
Q Consensus 370 ~ll~~~~f~~Al~~~~~----~~~~~~I~~~~~~~L~~~g~y~~Aa~~y~~~~ 418 (936)
.+++.|+|++|++..+. ...-..+....|.-++..|+|++|+..|.+..
T Consensus 6 ~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~ 58 (65)
T PF13432_consen 6 ALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERAL 58 (65)
T ss_dssp HHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 58899999999999753 33467889999999999999999999988764
No 126
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=88.53 E-value=0.48 Score=39.12 Aligned_cols=48 Identities=13% Similarity=0.236 Sum_probs=39.4
Q ss_pred HHchhhHHHHHHhcCCh----hhHHHHHHHHHHHHHhcCCHHHHHHHHHHhc
Q 002318 371 YLDMKEYAAALANCRDP----LQRDQVYLVQAEAAFATKDFHRAASFYAKIN 418 (936)
Q Consensus 371 ll~~~~f~~Al~~~~~~----~~~~~I~~~~~~~L~~~g~y~~Aa~~y~~~~ 418 (936)
+++.|+|++|+++.+.- ..-..+...+|.-++..|+|++|.+.+.+..
T Consensus 1 ll~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~ 52 (68)
T PF14559_consen 1 LLKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLL 52 (68)
T ss_dssp HHHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCH
T ss_pred ChhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 57899999999998742 2345778899999999999999999998865
No 127
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=88.50 E-value=8.1 Score=39.66 Aligned_cols=110 Identities=17% Similarity=0.226 Sum_probs=62.1
Q ss_pred EEeCCCCCeEEEEeecC--CCc-------cEEEEecCCCCceeccCCCCceEEEEEecCCCCCCCCcceEEEEcCCCcEE
Q 002318 71 VFVDPGGSHCIATIVGS--GGA-------ETFYTHAKWSKPRVLSKLKGLVVNAVAWNRQQITEASTKEIILGTDTGQLH 141 (936)
Q Consensus 71 i~lDp~G~hlli~~~~~--~~g-------~~~Y~~~~~~k~k~L~klkg~~I~sVaw~~~~~~~~st~~iLiGt~~G~i~ 141 (936)
++=.|.|.+|++.+... .+| +.||++....+...+.=-+.-.|.+|+|+|.. +.--++.|...+.|-
T Consensus 11 ~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP~g----~~favi~g~~~~~v~ 86 (194)
T PF08662_consen 11 LHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELKKEGPIHDVAWSPNG----NEFAVIYGSMPAKVT 86 (194)
T ss_pred EEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeeccCCCceEEEEECcCC----CEEEEEEccCCcccE
Confidence 44469999988887611 123 34455555444444421123369999999531 222233355555555
Q ss_pred EEEEecCCcccceeeEEeeeCCCCCceeeEEEEeeccCCCceEEEEEEC---CCeEEEEec
Q 002318 142 EMAVDEKDKREKYIKLLFELNELPEAFMGLQMETASLSNGTRYYVMAVT---PTRLYSFTG 199 (936)
Q Consensus 142 e~~i~~~~~~~~~~k~v~~l~~~~~~I~gi~~~~~~~~~~~~~~i~ast---~~rly~f~~ 199 (936)
.+.+. .+.+++++. .++..|.|.+ ..++++++.- +..|.-|.-
T Consensus 87 lyd~~--------~~~i~~~~~--~~~n~i~wsP-----~G~~l~~~g~~n~~G~l~~wd~ 132 (194)
T PF08662_consen 87 LYDVK--------GKKIFSFGT--QPRNTISWSP-----DGRFLVLAGFGNLNGDLEFWDV 132 (194)
T ss_pred EEcCc--------ccEeEeecC--CCceEEEECC-----CCCEEEEEEccCCCcEEEEEEC
Confidence 55442 455667764 5688899973 2367777653 234665543
No 128
>PF13920 zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger); PDB: 2YHN_B 2YHO_G 3T6P_A 2CSY_A 2VJE_B 2VJF_B 2HDP_B 2EA5_A 2ECG_A 3EB5_A ....
Probab=88.23 E-value=0.27 Score=38.33 Aligned_cols=33 Identities=33% Similarity=0.834 Sum_probs=25.9
Q ss_pred cccccccchhhhhcccccccccccCCCCCCCCEEEEcCCCh-hHHHhHHHHHh
Q 002318 833 DEDCGVCRRKILVAGRDYRMARGYASVGPMAPFYVFPCGHA-FHAQCLIAHVT 884 (936)
Q Consensus 833 ~~~C~~C~k~L~~~~~~~~~~~~~~~~~~~~~fvvFpCgH~-fH~~CL~~~~~ 884 (936)
+..|.+|.... + ..+++||||. |...|+.+...
T Consensus 2 ~~~C~iC~~~~-------~------------~~~~~pCgH~~~C~~C~~~~~~ 35 (50)
T PF13920_consen 2 DEECPICFENP-------R------------DVVLLPCGHLCFCEECAERLLK 35 (50)
T ss_dssp HSB-TTTSSSB-------S------------SEEEETTCEEEEEHHHHHHHHH
T ss_pred cCCCccCCccC-------C------------ceEEeCCCChHHHHHHhHHhcc
Confidence 45788888752 2 6789999999 99999998765
No 129
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=88.13 E-value=7.3 Score=42.90 Aligned_cols=121 Identities=10% Similarity=0.188 Sum_probs=86.2
Q ss_pred ehhHHHHHhhcCCCceeEEEEeCCEEEEEe----cCCeEEEEeC-CCCCceeeEcCCCCCCccceeEEEeCCCCCeEEEE
Q 002318 9 QVDVLERYAAKGRGVITCMSAGNDVIVLGT----SKGWLIRHDF-GAGDSYDIDLSAGRPGEQSIHKVFVDPGGSHCIAT 83 (936)
Q Consensus 9 ~~~~~~~~~~~~~~~i~~l~v~~n~l~l~~----~~g~l~ridl-~~~~~~~~~l~~~~~~~~~i~~i~lDp~G~hlli~ 83 (936)
.|.+++..+|... ..+++..+++--+++. .+|.|+.+|. +-..+..|+.| ++.|.-+-++|.|..+.-.
T Consensus 118 lLhTI~t~~~n~~-gl~AlS~n~~n~ylAyp~s~t~GdV~l~d~~nl~~v~~I~aH-----~~~lAalafs~~G~llATA 191 (391)
T KOG2110|consen 118 LLHTIETTPPNPK-GLCALSPNNANCYLAYPGSTTSGDVVLFDTINLQPVNTINAH-----KGPLAALAFSPDGTLLATA 191 (391)
T ss_pred eehhhhccCCCcc-ceEeeccCCCCceEEecCCCCCceEEEEEcccceeeeEEEec-----CCceeEEEECCCCCEEEEe
Confidence 3567777755443 3689999998777775 6799999999 77778889988 4688999999999877777
Q ss_pred eecCCCccEEEEe--cCCCCceeccCCCC---ceEEEEEecCCCCCCCCcceEEEEcCC-CcEEEEEEec
Q 002318 84 IVGSGGAETFYTH--AKWSKPRVLSKLKG---LVVNAVAWNRQQITEASTKEIILGTDT-GQLHEMAVDE 147 (936)
Q Consensus 84 ~~~~~~g~~~Y~~--~~~~k~k~L~klkg---~~I~sVaw~~~~~~~~st~~iLiGt~~-G~i~e~~i~~ 147 (936)
++ .|.+.=+. ..-.+..... +| +.|-|++|.++ ..||..+++ +.|.-..|+.
T Consensus 192 Se---KGTVIRVf~v~~G~kl~eFR--RG~~~~~IySL~Fs~d-------s~~L~~sS~TeTVHiFKL~~ 249 (391)
T KOG2110|consen 192 SE---KGTVIRVFSVPEGQKLYEFR--RGTYPVSIYSLSFSPD-------SQFLAASSNTETVHIFKLEK 249 (391)
T ss_pred cc---CceEEEEEEcCCccEeeeee--CCceeeEEEEEEECCC-------CCeEEEecCCCeEEEEEecc
Confidence 77 67765332 2223333333 34 57889999843 268888765 8787777754
No 130
>KOG4628 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=88.06 E-value=0.89 Score=50.21 Aligned_cols=36 Identities=28% Similarity=0.731 Sum_probs=30.1
Q ss_pred cccccchhhhhcccccccccccCCCCCCCCEEEEcCCChhHHHhHHHHHhhc
Q 002318 835 DCGVCRRKILVAGRDYRMARGYASVGPMAPFYVFPCGHAFHAQCLIAHVTQC 886 (936)
Q Consensus 835 ~C~~C~k~L~~~~~~~~~~~~~~~~~~~~~fvvFpCgH~fH~~CL~~~~~~~ 886 (936)
.|++|-..... . +.+.+-||+|.||..|....+.++
T Consensus 231 ~CaIClEdY~~-----G-----------dklRiLPC~H~FH~~CIDpWL~~~ 266 (348)
T KOG4628|consen 231 TCAICLEDYEK-----G-----------DKLRILPCSHKFHVNCIDPWLTQT 266 (348)
T ss_pred eEEEeeccccc-----C-----------CeeeEecCCCchhhccchhhHhhc
Confidence 89999877655 2 278899999999999999887665
No 131
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=87.80 E-value=19 Score=38.77 Aligned_cols=70 Identities=17% Similarity=0.159 Sum_probs=45.5
Q ss_pred cccchhhHHHHHHchhhHHHHHHhcCC-----hhhHHHHHHHHHHHHHhcCCHHHHHHHHHHhcCCCChHHHHHHhc
Q 002318 360 VNDEGRDMWKVYLDMKEYAAALANCRD-----PLQRDQVYLVQAEAAFATKDFHRAASFYAKINYILSFEEITLKFI 431 (936)
Q Consensus 360 ~~~e~~~~W~~ll~~~~f~~Al~~~~~-----~~~~~~I~~~~~~~L~~~g~y~~Aa~~y~~~~~~~~~E~v~lkFl 431 (936)
.+.|...+.+-++...+|+.|+++... |..|.. +..-|.-++...+|.+||.+|.+.. ..-+++--.+|-
T Consensus 9 ~EGeftaviy~lI~d~ry~DaI~~l~s~~Er~p~~rAg-LSlLgyCYY~~Q~f~~AA~CYeQL~-ql~P~~~qYrlY 83 (459)
T KOG4340|consen 9 PEGEFTAVVYRLIRDARYADAIQLLGSELERSPRSRAG-LSLLGYCYYRLQEFALAAECYEQLG-QLHPELEQYRLY 83 (459)
T ss_pred CCCchHHHHHHHHHHhhHHHHHHHHHHHHhcCccchHH-HHHHHHHHHHHHHHHHHHHHHHHHH-hhChHHHHHHHH
Confidence 345545556557999999999999653 333332 2334555666678999999999986 234444444543
No 132
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=87.76 E-value=6.4 Score=44.24 Aligned_cols=155 Identities=11% Similarity=0.127 Sum_probs=91.0
Q ss_pred EeCCEEEEEecCCeEEEEeC-CCCCce-eeEcCCCCC------------C---ccceeEEEeCCCCCeEEEEeecCCCcc
Q 002318 29 AGNDVIVLGTSKGWLIRHDF-GAGDSY-DIDLSAGRP------------G---EQSIHKVFVDPGGSHCIATIVGSGGAE 91 (936)
Q Consensus 29 v~~n~l~l~~~~g~l~ridl-~~~~~~-~~~l~~~~~------------~---~~~i~~i~lDp~G~hlli~~~~~~~g~ 91 (936)
-..|++++|+-+..|..||| --+.+. -+.|-.+.+ + ...|.-+--.-.-+|++.+.. + +..
T Consensus 190 ~~gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~nVLaSgs-a-D~T 267 (463)
T KOG0270|consen 190 GAGNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFRNVLASGS-A-DKT 267 (463)
T ss_pred CCcceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccccceeEEecC-C-Cce
Confidence 35789999999999999999 322221 122221100 0 011111222233456777654 1 566
Q ss_pred EEEEecCCCCceeccCCCCceEEEEEecCCCCCCCCcceEEEEcCCCcEEEEEEecCCcccceeeEEeeeCCCCCceeeE
Q 002318 92 TFYTHAKWSKPRVLSKLKGLVVNAVAWNRQQITEASTKEIILGTDTGQLHEMAVDEKDKREKYIKLLFELNELPEAFMGL 171 (936)
Q Consensus 92 ~~Y~~~~~~k~k~L~klkg~~I~sVaw~~~~~~~~st~~iLiGt~~G~i~e~~i~~~~~~~~~~k~v~~l~~~~~~I~gi 171 (936)
+--+....-+++....-.|-.|.+++|++.. + .-+|.|+-+|.+-.+.....+..-+.| +.. +.|.-+
T Consensus 268 V~lWD~~~g~p~~s~~~~~k~Vq~l~wh~~~-p----~~LLsGs~D~~V~l~D~R~~~~s~~~w----k~~---g~VEkv 335 (463)
T KOG0270|consen 268 VKLWDVDTGKPKSSITHHGKKVQTLEWHPYE-P----SVLLSGSYDGTVALKDCRDPSNSGKEW----KFD---GEVEKV 335 (463)
T ss_pred EEEEEcCCCCcceehhhcCCceeEEEecCCC-c----eEEEeccccceEEeeeccCccccCceE----Eec---cceEEE
Confidence 6677777777777666678899999999432 2 267778889877665442111111223 333 568889
Q ss_pred EEEeeccCCCceEEEEEEC-CCeEEEEecCCc
Q 002318 172 QMETASLSNGTRYYVMAVT-PTRLYSFTGFGS 202 (936)
Q Consensus 172 ~~~~~~~~~~~~~~i~ast-~~rly~f~~~~~ 202 (936)
.|.... -..++++| ..++|.|.-+.+
T Consensus 336 ~w~~~s-----e~~f~~~tddG~v~~~D~R~~ 362 (463)
T KOG0270|consen 336 AWDPHS-----ENSFFVSTDDGTVYYFDIRNP 362 (463)
T ss_pred EecCCC-----ceeEEEecCCceEEeeecCCC
Confidence 998542 24555565 789997875543
No 133
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=87.75 E-value=3.1 Score=46.31 Aligned_cols=95 Identities=15% Similarity=0.168 Sum_probs=64.6
Q ss_pred CceeEEEEeCCEE--EEEecCCeEEEEeCCCCCce-eeEcCCCCCCccceeEEEeCCCCCeEEEEeecCCCccEEEEecC
Q 002318 22 GVITCMSAGNDVI--VLGTSKGWLIRHDFGAGDSY-DIDLSAGRPGEQSIHKVFVDPGGSHCIATIVGSGGAETFYTHAK 98 (936)
Q Consensus 22 ~~i~~l~v~~n~l--~l~~~~g~l~ridl~~~~~~-~~~l~~~~~~~~~i~~i~lDp~G~hlli~~~~~~~g~~~Y~~~~ 98 (936)
+.||++.++-+-. .-.....++-.||+...++. -+.-+-... ..-.+++-+.|.|.+++.-+- +|.+|.|+..
T Consensus 342 g~vtSl~ls~~g~~lLsssRDdtl~viDlRt~eI~~~~sA~g~k~-asDwtrvvfSpd~~YvaAGS~---dgsv~iW~v~ 417 (459)
T KOG0288|consen 342 GRVTSLDLSMDGLELLSSSRDDTLKVIDLRTKEIRQTFSAEGFKC-ASDWTRVVFSPDGSYVAAGSA---DGSVYIWSVF 417 (459)
T ss_pred cceeeEeeccCCeEEeeecCCCceeeeecccccEEEEeecccccc-ccccceeEECCCCceeeeccC---CCcEEEEEcc
Confidence 3677777765533 22245667888888433332 222221111 234889999999999998876 8999999998
Q ss_pred CCCceeccCCCCce--EEEEEecC
Q 002318 99 WSKPRVLSKLKGLV--VNAVAWNR 120 (936)
Q Consensus 99 ~~k~k~L~klkg~~--I~sVaw~~ 120 (936)
..|.-..-+..+.. |+|++|++
T Consensus 418 tgKlE~~l~~s~s~~aI~s~~W~~ 441 (459)
T KOG0288|consen 418 TGKLEKVLSLSTSNAAITSLSWNP 441 (459)
T ss_pred CceEEEEeccCCCCcceEEEEEcC
Confidence 88876655566776 99999994
No 134
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=87.72 E-value=8.3 Score=43.42 Aligned_cols=150 Identities=14% Similarity=0.110 Sum_probs=89.6
Q ss_pred EEEEEecCCeEEEEeCCC-CCceeeEcCCC--CCCccceeEEEeCCCCCeEEEEeecCCCccEEEEecC--CCCceeccC
Q 002318 33 VIVLGTSKGWLIRHDFGA-GDSYDIDLSAG--RPGEQSIHKVFVDPGGSHCIATIVGSGGAETFYTHAK--WSKPRVLSK 107 (936)
Q Consensus 33 ~l~l~~~~g~l~ridl~~-~~~~~~~l~~~--~~~~~~i~~i~lDp~G~hlli~~~~~~~g~~~Y~~~~--~~k~k~L~k 107 (936)
-|.-|-.++++-.+|++. .....+..|+. .+-...|..+...|.-.-++.+.. .+|...-+... ..|+....+
T Consensus 192 ~Lls~~~d~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~--dd~~L~iwD~R~~~~~~~~~~~ 269 (422)
T KOG0264|consen 192 TLLSGSDDHTICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVG--DDGKLMIWDTRSNTSKPSHSVK 269 (422)
T ss_pred eEeeccCCCcEEEEeccccccCCccccceEEeecCCcceehhhccccchhhheeec--CCCeEEEEEcCCCCCCCccccc
Confidence 445555778899999922 22122222221 122478899999898877777655 25555555555 445555555
Q ss_pred CCCceEEEEEecCCCCCCCCcceEEEEcCCCcEEEEEEecCCcccceeeEEeeeCCCCCceeeEEEEeeccCCCceEEEE
Q 002318 108 LKGLVVNAVAWNRQQITEASTKEIILGTDTGQLHEMAVDEKDKREKYIKLLFELNELPEAFMGLQMETASLSNGTRYYVM 187 (936)
Q Consensus 108 lkg~~I~sVaw~~~~~~~~st~~iLiGt~~G~i~e~~i~~~~~~~~~~k~v~~l~~~~~~I~gi~~~~~~~~~~~~~~i~ 187 (936)
-.+..|.||+||+.. .--+..|+.+|.|....+-.- .+.++.+.+-...|..|+|.. ....++.-
T Consensus 270 ah~~~vn~~~fnp~~-----~~ilAT~S~D~tV~LwDlRnL------~~~lh~~e~H~dev~~V~WSP----h~etvLAS 334 (422)
T KOG0264|consen 270 AHSAEVNCVAFNPFN-----EFILATGSADKTVALWDLRNL------NKPLHTFEGHEDEVFQVEWSP----HNETVLAS 334 (422)
T ss_pred ccCCceeEEEeCCCC-----CceEEeccCCCcEEEeechhc------ccCceeccCCCcceEEEEeCC----CCCceeEe
Confidence 456799999999643 124444667898877655221 224555654335699999974 22234443
Q ss_pred EECCCeEEEEec
Q 002318 188 AVTPTRLYSFTG 199 (936)
Q Consensus 188 ast~~rly~f~~ 199 (936)
..+..|+.-|.-
T Consensus 335 Sg~D~rl~vWDl 346 (422)
T KOG0264|consen 335 SGTDRRLNVWDL 346 (422)
T ss_pred cccCCcEEEEec
Confidence 334788888863
No 135
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=87.72 E-value=42 Score=38.81 Aligned_cols=111 Identities=14% Similarity=0.104 Sum_probs=52.6
Q ss_pred HHHHHHhcccHHHHHHHHhC----CCCchh----hHHhhHHHHHhHChHH---HHHHHHccCCCCCC-cchhHhhh--cC
Q 002318 540 VVHHYIQQGEAKKALQMLRK----PAVPID----LQYKFAPDLIMLDAYE---TVESWMTTNNLNPR-KLIPAMMR--YS 605 (936)
Q Consensus 540 ll~~yi~~~~~~~AL~~L~~----~~d~~~----li~k~~~~Ll~~~p~~---ti~ll~~~~~ld~~-~li~~L~~--~~ 605 (936)
+...++..|++++|++.+.+ .++... ++..+ ..+-..++.+ .++.|.+...-||. .+.-.+-. +.
T Consensus 269 ~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~-~~l~~~~~~~~~~~~e~~lk~~p~~~~~~ll~sLg~l~~~ 347 (409)
T TIGR00540 269 LAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLPLCLPI-PRLKPEDNEKLEKLIEKQAKNVDDKPKCCINRALGQLLMK 347 (409)
T ss_pred HHHHHHHCCChHHHHHHHHHHHhhCCCcccchhHHHHHh-hhcCCCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHH
Confidence 55678889999999998864 344322 22111 1111123332 23333433333331 11111110 11
Q ss_pred CCCCCCCChHHHHHHHHH--HHhhcCCCCHhHHHHHHHHhhcCCChHHHHHHHHH
Q 002318 606 SEPHAKNETHEVIKYLEF--CVHRLHNEDPGVHNLLLSLYAKQEDDSALLRFLQC 658 (936)
Q Consensus 606 ~~~~~~~~~~~~~~YLe~--li~~~~~~~~~~hn~ll~Ly~~~~~~~~Ll~fL~~ 658 (936)
. .....+..|||. .+... .++..+..+..+|.+.++.++-..+.+.
T Consensus 348 ~-----~~~~~A~~~le~a~a~~~~--p~~~~~~~La~ll~~~g~~~~A~~~~~~ 395 (409)
T TIGR00540 348 H-----GEFIEAADAFKNVAACKEQ--LDANDLAMAADAFDQAGDKAEAAAMRQD 395 (409)
T ss_pred c-----ccHHHHHHHHHHhHHhhcC--CCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 0 134557788884 33332 2344555777777776555555444443
No 136
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=87.43 E-value=5.2 Score=43.89 Aligned_cols=59 Identities=19% Similarity=0.242 Sum_probs=45.6
Q ss_pred HHHHHhhcC--------CCceeEEEEeCCEE---EEEecCCeEEEEeC-CCCCceeeEcCCCCCCccceeEEEeCC
Q 002318 12 VLERYAAKG--------RGVITCMSAGNDVI---VLGTSKGWLIRHDF-GAGDSYDIDLSAGRPGEQSIHKVFVDP 75 (936)
Q Consensus 12 ~~~~~~~~~--------~~~i~~l~v~~n~l---~l~~~~g~l~ridl-~~~~~~~~~l~~~~~~~~~i~~i~lDp 75 (936)
+++|.|+++ +|-|.|||-+.+.| +-|-.+|.|..||+ +.+....++.+ .+-|.+|.+|.
T Consensus 49 KleR~fakPFv~~L~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~~~~~f~AH-----~G~V~Gi~v~~ 119 (433)
T KOG0268|consen 49 KLERVFAKPFVGSLDGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQRECIRTFKAH-----EGLVRGICVTQ 119 (433)
T ss_pred HHHHHhhccchhhccccccccchhhcCcchhhhhhccccCceEEEEehhhhhhhheeecc-----cCceeeEEecc
Confidence 455555543 56689999999985 77889999999999 77777777777 45778888876
No 137
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=87.36 E-value=12 Score=40.79 Aligned_cols=157 Identities=10% Similarity=0.063 Sum_probs=95.0
Q ss_pred cceehhH--HHHHhhcCCCceeEEEEeC----CEEEEEecCCeEEEEeC-CCCCceeeEcCCCCCCccceeEEEeCCCCC
Q 002318 6 QVFQVDV--LERYAAKGRGVITCMSAGN----DVIVLGTSKGWLIRHDF-GAGDSYDIDLSAGRPGEQSIHKVFVDPGGS 78 (936)
Q Consensus 6 ~~f~~~~--~~~~~~~~~~~i~~l~v~~----n~l~l~~~~g~l~ridl-~~~~~~~~~l~~~~~~~~~i~~i~lDp~G~ 78 (936)
.+|..++ .-..+.-.++.+.-+++.+ +.+.-+...|+|-.||+ -..++.++.-...+ .-.-+.+|-+..
T Consensus 53 ~lyd~~tg~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~----~~~f~~ld~nck 128 (376)
T KOG1188|consen 53 RLYDKGTGQLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQS----GTPFICLDLNCK 128 (376)
T ss_pred EEEeccchhhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCC----CCcceEeeccCc
Confidence 4566666 3334444444555555544 78899999999999999 44444445433211 123466777644
Q ss_pred eEEEEee---cCCCccEEEEe-cCCCC-ceeccCCCCceEEEEEecCCCCCCCCcceEEEEcCCCcEEEEEEecCCcccc
Q 002318 79 HCIATIV---GSGGAETFYTH-AKWSK-PRVLSKLKGLVVNAVAWNRQQITEASTKEIILGTDTGQLHEMAVDEKDKREK 153 (936)
Q Consensus 79 hlli~~~---~~~~g~~~Y~~-~~~~k-~k~L~klkg~~I~sVaw~~~~~~~~st~~iLiGt~~G~i~e~~i~~~~~~~~ 153 (936)
+=++|+. ...+..++.+. +.+.+ .+.+..-..-+||+|.|.|.. + .-+|-|+.+|.+-.+.++.. .+|-
T Consensus 129 ~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~-p----nlLlSGSvDGLvnlfD~~~d-~EeD 202 (376)
T KOG1188|consen 129 KNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSD-P----NLLLSGSVDGLVNLFDTKKD-NEED 202 (376)
T ss_pred CCeEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCC-C----CeEEeecccceEEeeecCCC-cchh
Confidence 4445443 11234445554 44445 677776667799999999543 2 25677889998887777654 2333
Q ss_pred eeeEEeeeCCCCCceeeEEEEe
Q 002318 154 YIKLLFELNELPEAFMGLQMET 175 (936)
Q Consensus 154 ~~k~v~~l~~~~~~I~gi~~~~ 175 (936)
-+-++++.. .+|..|.|..
T Consensus 203 aL~~viN~~---sSI~~igw~~ 221 (376)
T KOG1188|consen 203 ALLHVINHG---SSIHLIGWLS 221 (376)
T ss_pred hHHHhhccc---ceeeeeeeec
Confidence 344444443 5688888874
No 138
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=87.18 E-value=94 Score=39.23 Aligned_cols=45 Identities=9% Similarity=-0.142 Sum_probs=26.8
Q ss_pred hHHHHHHHHHHHhhcCCCCHhHHHHHHHHhhcCCChHHHHHHHHHh
Q 002318 614 THEVIKYLEFCVHRLHNEDPGVHNLLLSLYAKQEDDSALLRFLQCK 659 (936)
Q Consensus 614 ~~~~~~YLe~li~~~~~~~~~~hn~ll~Ly~~~~~~~~Ll~fL~~~ 659 (936)
...++..|+.++...+.. +.++..+..+|...++..+.+..|+..
T Consensus 375 ~~eA~~~l~~al~~~P~n-~~l~~~lA~l~~~~g~~~~A~~~l~~a 419 (765)
T PRK10049 375 LPQAEMRARELAYNAPGN-QGLRIDYASVLQARGWPRAAENELKKA 419 (765)
T ss_pred HHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 345666666666554433 566666666776655555566666554
No 139
>PRK05137 tolB translocation protein TolB; Provisional
Probab=86.86 E-value=21 Score=41.55 Aligned_cols=144 Identities=10% Similarity=0.139 Sum_probs=84.0
Q ss_pred eCCEEEEEecCC------eEEEEeCCCCCceeeEcCCCCCCccceeEEEeCCCCCeEEEEeecCCCccEEEEecCCCCce
Q 002318 30 GNDVIVLGTSKG------WLIRHDFGAGDSYDIDLSAGRPGEQSIHKVFVDPGGSHCIATIVGSGGAETFYTHAKWSKPR 103 (936)
Q Consensus 30 ~~n~l~l~~~~g------~l~ridl~~~~~~~~~l~~~~~~~~~i~~i~lDp~G~hlli~~~~~~~g~~~Y~~~~~~k~k 103 (936)
...+.|+.-.+| .|+.+|.+..+...+.-+ ...+......|.|.+++..+...+++..|-++....+.+
T Consensus 165 ~~~iafv~~~~~~~~~~~~l~~~d~dg~~~~~lt~~-----~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~ 239 (435)
T PRK05137 165 DTRIVYVAESGPKNKRIKRLAIMDQDGANVRYLTDG-----SSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQRE 239 (435)
T ss_pred CCeEEEEEeeCCCCCcceEEEEECCCCCCcEEEecC-----CCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEE
Confidence 344555554454 788888844444333211 356788888999999887765333456666666666667
Q ss_pred eccCCCCceEEEEEecCCCCCCCCcceEEEEc-CCC--cEEEEEEecCCcccceeeEEeeeCCCCCceeeEEEEeeccCC
Q 002318 104 VLSKLKGLVVNAVAWNRQQITEASTKEIILGT-DTG--QLHEMAVDEKDKREKYIKLLFELNELPEAFMGLQMETASLSN 180 (936)
Q Consensus 104 ~L~klkg~~I~sVaw~~~~~~~~st~~iLiGt-~~G--~i~e~~i~~~~~~~~~~k~v~~l~~~~~~I~gi~~~~~~~~~ 180 (936)
.+...+| .+.+.+|.++ ...+++.. .+| .||...+..+ ..+++..- ++..+...|. .
T Consensus 240 ~l~~~~g-~~~~~~~SPD------G~~la~~~~~~g~~~Iy~~d~~~~-----~~~~Lt~~---~~~~~~~~~s-----p 299 (435)
T PRK05137 240 LVGNFPG-MTFAPRFSPD------GRKVVMSLSQGGNTDIYTMDLRSG-----TTTRLTDS---PAIDTSPSYS-----P 299 (435)
T ss_pred EeecCCC-cccCcEECCC------CCEEEEEEecCCCceEEEEECCCC-----ceEEccCC---CCccCceeEc-----C
Confidence 7877766 5668899843 23565543 344 4777766543 13343222 2334556665 2
Q ss_pred CceEEEEEECC---CeEEEEe
Q 002318 181 GTRYYVMAVTP---TRLYSFT 198 (936)
Q Consensus 181 ~~~~~i~ast~---~rly~f~ 198 (936)
+.+.+++++.. ..+|.+.
T Consensus 300 DG~~i~f~s~~~g~~~Iy~~d 320 (435)
T PRK05137 300 DGSQIVFESDRSGSPQLYVMN 320 (435)
T ss_pred CCCEEEEEECCCCCCeEEEEE
Confidence 33567776642 3577664
No 140
>PF13445 zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A.
Probab=86.85 E-value=0.45 Score=35.86 Aligned_cols=23 Identities=39% Similarity=0.855 Sum_probs=16.3
Q ss_pred CEEEEcCCChhHHHhHHHHHhhc
Q 002318 864 PFYVFPCGHAFHAQCLIAHVTQC 886 (936)
Q Consensus 864 ~fvvFpCgH~fH~~CL~~~~~~~ 886 (936)
+=++-+|||+|-.+|+.+.....
T Consensus 13 ~P~~L~CGH~~c~~cl~~l~~~~ 35 (43)
T PF13445_consen 13 PPMVLPCGHVFCKDCLQKLSKKS 35 (43)
T ss_dssp -EEE-SSS-EEEHHHHHHHHHH-
T ss_pred CCEEEeCccHHHHHHHHHHHhcC
Confidence 45678899999999999887644
No 141
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=86.81 E-value=23 Score=38.27 Aligned_cols=109 Identities=17% Similarity=0.182 Sum_probs=77.8
Q ss_pred eeEEEEeCCEE-EEEecCCeEEEE-eC-CCCCceeeEcCCCCCCccceeEEEeCCCCCeEEEEeecCCCccEEEEecCCC
Q 002318 24 ITCMSAGNDVI-VLGTSKGWLIRH-DF-GAGDSYDIDLSAGRPGEQSIHKVFVDPGGSHCIATIVGSGGAETFYTHAKWS 100 (936)
Q Consensus 24 i~~l~v~~n~l-~l~~~~g~l~ri-dl-~~~~~~~~~l~~~~~~~~~i~~i~lDp~G~hlli~~~~~~~g~~~Y~~~~~~ 100 (936)
++|+..+.+-- .+........|| -+ .+.-..++.=+ .+-|+..-..+.|+|+|.++. +|.+-.||.+++
T Consensus 309 vt~l~FSrD~SqiLS~sfD~tvRiHGlKSGK~LKEfrGH-----sSyvn~a~ft~dG~~iisaSs---DgtvkvW~~Ktt 380 (508)
T KOG0275|consen 309 VTCLSFSRDNSQILSASFDQTVRIHGLKSGKCLKEFRGH-----SSYVNEATFTDDGHHIISASS---DGTVKVWHGKTT 380 (508)
T ss_pred eeEEEEccCcchhhcccccceEEEeccccchhHHHhcCc-----cccccceEEcCCCCeEEEecC---CccEEEecCcch
Confidence 79998886644 445555566666 33 33334455444 356777777789999999998 999999998775
Q ss_pred ----CceeccCCCCceEEEEEecCCCCCCCCcceEEEEcCCCcEEEEEEec
Q 002318 101 ----KPRVLSKLKGLVVNAVAWNRQQITEASTKEIILGTDTGQLHEMAVDE 147 (936)
Q Consensus 101 ----k~k~L~klkg~~I~sVaw~~~~~~~~st~~iLiGt~~G~i~e~~i~~ 147 (936)
..|++. .+..|.+|-.-|- ++..|++......||..++.+
T Consensus 381 eC~~Tfk~~~--~d~~vnsv~~~PK-----npeh~iVCNrsntv~imn~qG 424 (508)
T KOG0275|consen 381 ECLSTFKPLG--TDYPVNSVILLPK-----NPEHFIVCNRSNTVYIMNMQG 424 (508)
T ss_pred hhhhhccCCC--CcccceeEEEcCC-----CCceEEEEcCCCeEEEEeccc
Confidence 356666 5689999988843 244788887778899888865
No 142
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=86.63 E-value=2.4 Score=44.00 Aligned_cols=78 Identities=15% Similarity=0.089 Sum_probs=62.4
Q ss_pred hHHHHHHhcCChhhHHHHHHHHHHHHHhcCCHHHHHHHHHHhc-------CCCChHHHHHHhcCcChHHHHHHHHHHHhh
Q 002318 376 EYAAALANCRDPLQRDQVYLVQAEAAFATKDFHRAASFYAKIN-------YILSFEEITLKFISVSEQDALRTFLLRKLD 448 (936)
Q Consensus 376 ~f~~Al~~~~~~~~~~~I~~~~~~~L~~~g~y~~Aa~~y~~~~-------~~~~~E~v~lkFl~~~~~~~L~~YL~~~l~ 448 (936)
.|..|+.+.. ..-.|+-.||.+|-.+|+|++|.++|.+.. -..+||...+=+++.++.+.=..|+..-|.
T Consensus 91 ~YrkAlsl~p---~~GdVLNNYG~FLC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~ 167 (250)
T COG3063 91 SYRKALSLAP---NNGDVLNNYGAFLCAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALE 167 (250)
T ss_pred HHHHHHhcCC---CccchhhhhhHHHHhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHH
Confidence 5556665543 345789999999999999999999998875 246899888889999999999999998888
Q ss_pred cccCchhH
Q 002318 449 NLAKDDKC 456 (936)
Q Consensus 449 ~l~~~~~~ 456 (936)
..+..+..
T Consensus 168 ~dp~~~~~ 175 (250)
T COG3063 168 LDPQFPPA 175 (250)
T ss_pred hCcCCChH
Confidence 76665543
No 143
>PF14446 Prok-RING_1: Prokaryotic RING finger family 1
Probab=86.54 E-value=0.4 Score=37.73 Aligned_cols=35 Identities=29% Similarity=0.645 Sum_probs=28.7
Q ss_pred ccccccccchhhhhcccccccccccCCCCCCCCEEEEc-CCChhHHHhHHHH
Q 002318 832 RDEDCGVCRRKILVAGRDYRMARGYASVGPMAPFYVFP-CGHAFHAQCLIAH 882 (936)
Q Consensus 832 ~~~~C~~C~k~L~~~~~~~~~~~~~~~~~~~~~fvvFp-CgH~fH~~CL~~~ 882 (936)
.+.+|.+||+++.. . .+.||=| ||-.||++|-...
T Consensus 4 ~~~~C~~Cg~~~~~-----~-----------dDiVvCp~CgapyHR~C~~~~ 39 (54)
T PF14446_consen 4 EGCKCPVCGKKFKD-----G-----------DDIVVCPECGAPYHRDCWEKA 39 (54)
T ss_pred cCccChhhCCcccC-----C-----------CCEEECCCCCCcccHHHHhhC
Confidence 36789999999975 2 2788888 9999999998653
No 144
>PLN03208 E3 ubiquitin-protein ligase RMA2; Provisional
Probab=86.34 E-value=0.6 Score=47.12 Aligned_cols=37 Identities=30% Similarity=0.589 Sum_probs=27.9
Q ss_pred ecccccccccchhhhhcccccccccccCCCCCCCCEEEEcCCChhHHHhHHHHHhh
Q 002318 830 IDRDEDCGVCRRKILVAGRDYRMARGYASVGPMAPFYVFPCGHAFHAQCLIAHVTQ 885 (936)
Q Consensus 830 i~~~~~C~~C~k~L~~~~~~~~~~~~~~~~~~~~~fvvFpCgH~fH~~CL~~~~~~ 885 (936)
....-.|.+|...+.. + ++-+|||.|+..|+.+....
T Consensus 15 ~~~~~~CpICld~~~d------------------P-VvT~CGH~FC~~CI~~wl~~ 51 (193)
T PLN03208 15 SGGDFDCNICLDQVRD------------------P-VVTLCGHLFCWPCIHKWTYA 51 (193)
T ss_pred CCCccCCccCCCcCCC------------------c-EEcCCCchhHHHHHHHHHHh
Confidence 3345689999986533 4 55699999999999987643
No 145
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=86.26 E-value=8.4 Score=43.91 Aligned_cols=120 Identities=10% Similarity=0.179 Sum_probs=70.9
Q ss_pred EEEEecCCeEEEEeC-CCCCceee-EcCCCCCCccceeEEEeCCCCCeEEEEeecCCCccEEEEecCCCC--ceeccCCC
Q 002318 34 IVLGTSKGWLIRHDF-GAGDSYDI-DLSAGRPGEQSIHKVFVDPGGSHCIATIVGSGGAETFYTHAKWSK--PRVLSKLK 109 (936)
Q Consensus 34 l~l~~~~g~l~ridl-~~~~~~~~-~l~~~~~~~~~i~~i~lDp~G~hlli~~~~~~~g~~~Y~~~~~~k--~k~L~klk 109 (936)
|.++-.+|.|..||. ........ +.| ..+-..|.+.|...-+|++.. --...|+.....+ .+.|. -
T Consensus 180 L~~asd~G~VtlwDv~g~sp~~~~~~~H-----sAP~~gicfspsne~l~vsVG---~Dkki~~yD~~s~~s~~~l~--y 249 (673)
T KOG4378|consen 180 LSIASDKGAVTLWDVQGMSPIFHASEAH-----SAPCRGICFSPSNEALLVSVG---YDKKINIYDIRSQASTDRLT--Y 249 (673)
T ss_pred eEeeccCCeEEEEeccCCCcccchhhhc-----cCCcCcceecCCccceEEEec---ccceEEEeecccccccceee--e
Confidence 345556677777777 33322222 122 246678999999998888865 2333444322221 23343 4
Q ss_pred CceEEEEEecCCCCCCCCcceEEEEcCCCcEEEEEEecCCcccceeeEEeeeCCCCCceeeEEEEe
Q 002318 110 GLVVNAVAWNRQQITEASTKEIILGTDTGQLHEMAVDEKDKREKYIKLLFELNELPEAFMGLQMET 175 (936)
Q Consensus 110 g~~I~sVaw~~~~~~~~st~~iLiGt~~G~i~e~~i~~~~~~~~~~k~v~~l~~~~~~I~gi~~~~ 175 (936)
.++.++|||.+.- --..+|+.+|.||.+.+...+ .-++.+ ...+ ..|+.|.|..
T Consensus 250 ~~Plstvaf~~~G------~~L~aG~s~G~~i~YD~R~~k---~Pv~v~-sah~--~sVt~vafq~ 303 (673)
T KOG4378|consen 250 SHPLSTVAFSECG------TYLCAGNSKGELIAYDMRSTK---APVAVR-SAHD--ASVTRVAFQP 303 (673)
T ss_pred cCCcceeeecCCc------eEEEeecCCceEEEEecccCC---CCceEe-eecc--cceeEEEeee
Confidence 5789999998321 145668999999999886542 223333 2332 3488888864
No 146
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=85.85 E-value=6.9 Score=44.37 Aligned_cols=92 Identities=18% Similarity=0.204 Sum_probs=77.1
Q ss_pred CceeEEEEeCCEEEEEecCC-eEEEEeCCCCCceeeEcCCCCCCccceeEEEeCCCCCeEEEEeecCCCccEEEEecCCC
Q 002318 22 GVITCMSAGNDVIVLGTSKG-WLIRHDFGAGDSYDIDLSAGRPGEQSIHKVFVDPGGSHCIATIVGSGGAETFYTHAKWS 100 (936)
Q Consensus 22 ~~i~~l~v~~n~l~l~~~~g-~l~ridl~~~~~~~~~l~~~~~~~~~i~~i~lDp~G~hlli~~~~~~~g~~~Y~~~~~~ 100 (936)
..-.++.+.++-.++|+..| .|-.+|.+..++.+++-+ -+.|..+-++|.|..++++-+ .++.+-+....-
T Consensus 362 VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e~kr~e~~-----lg~I~av~vs~dGK~~vvaNd---r~el~vididng 433 (668)
T COG4946 362 VRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGEVKRIEKD-----LGNIEAVKVSPDGKKVVVAND---RFELWVIDIDNG 433 (668)
T ss_pred eEEEEEccCCcceEEeccCCceEEEEecCCceEEEeeCC-----ccceEEEEEcCCCcEEEEEcC---ceEEEEEEecCC
Confidence 34567888888999999999 888889977778888765 357999999999999999988 899999998888
Q ss_pred CceeccCCCCceEEEEEecCC
Q 002318 101 KPRVLSKLKGLVVNAVAWNRQ 121 (936)
Q Consensus 101 k~k~L~klkg~~I~sVaw~~~ 121 (936)
+++.+-|-.--.|+-++|.+.
T Consensus 434 nv~~idkS~~~lItdf~~~~n 454 (668)
T COG4946 434 NVRLIDKSEYGLITDFDWHPN 454 (668)
T ss_pred CeeEecccccceeEEEEEcCC
Confidence 888887655568999999853
No 147
>PF12816 Vps8: Golgi CORVET complex core vacuolar protein 8
Probab=85.66 E-value=2.7 Score=43.19 Aligned_cols=73 Identities=16% Similarity=0.203 Sum_probs=54.7
Q ss_pred CCCCHhHHHHHHHHhhcCCChHHHHHHHHHhhCCCCCCCCcccCChHHHHHHHHhcCcceeeehhh-hccccHHHHHHHH
Q 002318 629 HNEDPGVHNLLLSLYAKQEDDSALLRFLQCKFGKGRENGPEFFYDPKYALRLCLKEKRMRACVHIY-GMMSMHEEAVALA 707 (936)
Q Consensus 629 ~~~~~~~hn~ll~Ly~~~~~~~~Ll~fL~~~~~~~~~~~~~~~yd~~~aLrlc~~~~~~~~~v~L~-~~~g~~~eAl~l~ 707 (936)
....+.+-+.+++.|++.+.-+.+-..+-.- + -...|++.++++|++++++++.+|+| .-+++|--=+.-+
T Consensus 18 ~~lpp~v~k~lv~~y~~~~~~~~lE~lI~~L------D--~~~LDidq~i~lC~~~~LydalIYv~n~~l~DYvTPL~~l 89 (196)
T PF12816_consen 18 KSLPPEVFKALVEHYASKGRLERLEQLILHL------D--PSSLDIDQVIKLCKKHGLYDALIYVWNRALNDYVTPLEEL 89 (196)
T ss_pred CCCCHHHHHHHHHHHHHCCCHHHHHHHHHhC------C--HHhcCHHHHHHHHHHCCCCCeeeeeeeccccCCcHHHHHH
Confidence 3456889999999998866444444444432 1 14689999999999999999999999 4559997766666
Q ss_pred Hh
Q 002318 708 LQ 709 (936)
Q Consensus 708 l~ 709 (936)
+.
T Consensus 90 l~ 91 (196)
T PF12816_consen 90 LE 91 (196)
T ss_pred HH
Confidence 64
No 148
>PRK03629 tolB translocation protein TolB; Provisional
Probab=85.60 E-value=33 Score=39.98 Aligned_cols=143 Identities=13% Similarity=0.138 Sum_probs=83.0
Q ss_pred eCCEEEEEecCC-----eEEEEeCCCCCceeeEcCCCCCCccceeEEEeCCCCCeEEEEeecCCCccEEEEecCCCCcee
Q 002318 30 GNDVIVLGTSKG-----WLIRHDFGAGDSYDIDLSAGRPGEQSIHKVFVDPGGSHCIATIVGSGGAETFYTHAKWSKPRV 104 (936)
Q Consensus 30 ~~n~l~l~~~~g-----~l~ridl~~~~~~~~~l~~~~~~~~~i~~i~lDp~G~hlli~~~~~~~g~~~Y~~~~~~k~k~ 104 (936)
.+++.|+....+ .|...|.++.+...+ .. +...+...-..|.|.+++..+...+....|.++....+.+.
T Consensus 163 ~~riayv~~~~~~~~~~~l~~~d~dg~~~~~l--t~---~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~ 237 (429)
T PRK03629 163 RTRIAYVVQTNGGQFPYELRVSDYDGYNQFVV--HR---SPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQ 237 (429)
T ss_pred CCeEEEEEeeCCCCcceeEEEEcCCCCCCEEe--ec---CCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEE
Confidence 455666655433 688888844433322 21 13567888889999998876642223445555555566777
Q ss_pred ccCCCCceEEEEEecCCCCCCCCcceEEEE-cCCC--cEEEEEEecCCcccceeeEEeeeCCCCCceeeEEEEeeccCCC
Q 002318 105 LSKLKGLVVNAVAWNRQQITEASTKEIILG-TDTG--QLHEMAVDEKDKREKYIKLLFELNELPEAFMGLQMETASLSNG 181 (936)
Q Consensus 105 L~klkg~~I~sVaw~~~~~~~~st~~iLiG-t~~G--~i~e~~i~~~~~~~~~~k~v~~l~~~~~~I~gi~~~~~~~~~~ 181 (936)
|..++|. +.+++|.++ ...+++. +.+| .||...++.+ ..+++..- +..+.+..|.. +
T Consensus 238 l~~~~~~-~~~~~~SPD------G~~La~~~~~~g~~~I~~~d~~tg-----~~~~lt~~---~~~~~~~~wSP-----D 297 (429)
T PRK03629 238 VASFPRH-NGAPAFSPD------GSKLAFALSKTGSLNLYVMDLASG-----QIRQVTDG---RSNNTEPTWFP-----D 297 (429)
T ss_pred ccCCCCC-cCCeEECCC------CCEEEEEEcCCCCcEEEEEECCCC-----CEEEccCC---CCCcCceEECC-----C
Confidence 8777764 457899953 1245544 4445 4777766543 13443222 24467777762 3
Q ss_pred ceEEEEEECC---CeEEEE
Q 002318 182 TRYYVMAVTP---TRLYSF 197 (936)
Q Consensus 182 ~~~~i~ast~---~rly~f 197 (936)
.+.+++++.. .++|.+
T Consensus 298 G~~I~f~s~~~g~~~Iy~~ 316 (429)
T PRK03629 298 SQNLAYTSDQAGRPQVYKV 316 (429)
T ss_pred CCEEEEEeCCCCCceEEEE
Confidence 3677776653 367755
No 149
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=85.52 E-value=9.2 Score=45.14 Aligned_cols=52 Identities=13% Similarity=0.190 Sum_probs=40.5
Q ss_pred HHHHHHchhhHHHHHHhcCChhh------------HHHHHHHHHHHHHhcCCHHHHHHHHHHhc
Q 002318 367 MWKVYLDMKEYAAALANCRDPLQ------------RDQVYLVQAEAAFATKDFHRAASFYAKIN 418 (936)
Q Consensus 367 ~W~~ll~~~~f~~Al~~~~~~~~------------~~~I~~~~~~~L~~~g~y~~Aa~~y~~~~ 418 (936)
.=.+|..+|+|++|...|+...+ ...-...+|..|...++|.+|+.+|.+..
T Consensus 205 La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL 268 (508)
T KOG1840|consen 205 LAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEAL 268 (508)
T ss_pred HHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 34568889999999999974221 22333469999999999999999999876
No 150
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=85.48 E-value=14 Score=39.90 Aligned_cols=112 Identities=12% Similarity=0.118 Sum_probs=74.1
Q ss_pred ccceeEEEeCCCCCeEEEEeecCCCccEEEEecCCCCceeccCCCCceEEEEEecCCCCCCCCcceEEEEcCCCcEEEEE
Q 002318 65 EQSIHKVFVDPGGSHCIATIVGSGGAETFYTHAKWSKPRVLSKLKGLVVNAVAWNRQQITEASTKEIILGTDTGQLHEMA 144 (936)
Q Consensus 65 ~~~i~~i~lDp~G~hlli~~~~~~~g~~~Y~~~~~~k~k~L~klkg~~I~sVaw~~~~~~~~st~~iLiGt~~G~i~e~~ 144 (936)
.+.|..+-.+|.+.+|++++= +|..-.........+..-+ .+.++.+.+|-+. ..++.|+-+|.|--+.
T Consensus 13 ~d~IS~v~f~~~~~~LLvssW---DgslrlYdv~~~~l~~~~~-~~~plL~c~F~d~-------~~~~~G~~dg~vr~~D 81 (323)
T KOG1036|consen 13 EDGISSVKFSPSSSDLLVSSW---DGSLRLYDVPANSLKLKFK-HGAPLLDCAFADE-------STIVTGGLDGQVRRYD 81 (323)
T ss_pred hhceeeEEEcCcCCcEEEEec---cCcEEEEeccchhhhhhee-cCCceeeeeccCC-------ceEEEeccCceEEEEE
Confidence 578999999999999999988 8887544443333344333 4679999999842 2899999999999998
Q ss_pred EecCCcccceeeEEeeeCCCCCceeeEEEEeeccCCCceEEEEEECCCeEEEEecC
Q 002318 145 VDEKDKREKYIKLLFELNELPEAFMGLQMETASLSNGTRYYVMAVTPTRLYSFTGF 200 (936)
Q Consensus 145 i~~~~~~~~~~k~v~~l~~~~~~I~gi~~~~~~~~~~~~~~i~ast~~rly~f~~~ 200 (936)
++.+.. ..+..-.++|++|+.... .+.+|-.+=+.++-.|++.
T Consensus 82 ln~~~~--------~~igth~~~i~ci~~~~~-----~~~vIsgsWD~~ik~wD~R 124 (323)
T KOG1036|consen 82 LNTGNE--------DQIGTHDEGIRCIEYSYE-----VGCVISGSWDKTIKFWDPR 124 (323)
T ss_pred ecCCcc--------eeeccCCCceEEEEeecc-----CCeEEEcccCccEEEEecc
Confidence 876521 122222366888887631 1233332225666666654
No 151
>PF15227 zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB: 2EGP_A 2ECV_A 2ECJ_A 2YSL_A 2YSJ_A.
Probab=85.22 E-value=0.47 Score=35.62 Aligned_cols=22 Identities=32% Similarity=0.695 Sum_probs=17.2
Q ss_pred EEEcCCChhHHHhHHHHHhhcC
Q 002318 866 YVFPCGHAFHAQCLIAHVTQCT 887 (936)
Q Consensus 866 vvFpCgH~fH~~CL~~~~~~~~ 887 (936)
|..+|||+|=..|+.+......
T Consensus 12 v~l~CGH~FC~~Cl~~~~~~~~ 33 (42)
T PF15227_consen 12 VSLPCGHSFCRSCLERLWKEPS 33 (42)
T ss_dssp EE-SSSSEEEHHHHHHHHCCSS
T ss_pred cccCCcCHHHHHHHHHHHHccC
Confidence 4569999999999998875543
No 152
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=85.08 E-value=91 Score=37.08 Aligned_cols=105 Identities=14% Similarity=0.113 Sum_probs=70.1
Q ss_pred eeEEEEeCC----EEEEEecCCeEEEEeC-CCCCceeeEcCCCCCCccceeEEEeCCCCCeEEEEeecCCCccEEEEecC
Q 002318 24 ITCMSAGND----VIVLGTSKGWLIRHDF-GAGDSYDIDLSAGRPGEQSIHKVFVDPGGSHCIATIVGSGGAETFYTHAK 98 (936)
Q Consensus 24 i~~l~v~~n----~l~l~~~~g~l~ridl-~~~~~~~~~l~~~~~~~~~i~~i~lDp~G~hlli~~~~~~~g~~~Y~~~~ 98 (936)
|.|+.--.. .|.-|-.+.++-.||. ...-|+..+=| ..-|..++..|.=-.+|.++. ||.+--+|..
T Consensus 186 VN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk~CV~TLeGH-----t~Nvs~v~fhp~lpiiisgsE---DGTvriWhs~ 257 (794)
T KOG0276|consen 186 VNCVDYYTGGDKPYLISGADDLTIKVWDYQTKSCVQTLEGH-----TNNVSFVFFHPELPIIISGSE---DGTVRIWNSK 257 (794)
T ss_pred cceEEeccCCCcceEEecCCCceEEEeecchHHHHHHhhcc-----cccceEEEecCCCcEEEEecC---CccEEEecCc
Confidence 566665433 5666667778888899 55555555444 357899999999887777787 9999999987
Q ss_pred CCCceeccCCCCceEEEEEecCCCCCCCCcceEEEEcCCCcEEE
Q 002318 99 WSKPRVLSKLKGLVVNAVAWNRQQITEASTKEIILGTDTGQLHE 142 (936)
Q Consensus 99 ~~k~k~L~klkg~~I~sVaw~~~~~~~~st~~iLiGt~~G~i~e 142 (936)
+-+.-..-.+..-.|=||+=.+ .++.|++|-.+|.|..
T Consensus 258 Ty~lE~tLn~gleRvW~I~~~k------~~~~i~vG~Deg~i~v 295 (794)
T KOG0276|consen 258 TYKLEKTLNYGLERVWCIAAHK------GDGKIAVGFDEGSVTV 295 (794)
T ss_pred ceehhhhhhcCCceEEEEeecC------CCCeEEEeccCCcEEE
Confidence 6543222122223455555442 4568999999997654
No 153
>PF14779 BBS1: Ciliary BBSome complex subunit 1
Probab=85.08 E-value=1.7 Score=46.23 Aligned_cols=85 Identities=19% Similarity=0.237 Sum_probs=54.2
Q ss_pred CcceehhHHHHHhhcCCCceeEEEEeCC---------EEEEEecCCeEEEEeC-CCCCceeeEcCCCCCCccceeEEEeC
Q 002318 5 RQVFQVDVLERYAAKGRGVITCMSAGND---------VIVLGTSKGWLIRHDF-GAGDSYDIDLSAGRPGEQSIHKVFVD 74 (936)
Q Consensus 5 ~~~f~~~~~~~~~~~~~~~i~~l~v~~n---------~l~l~~~~g~l~ridl-~~~~~~~~~l~~~~~~~~~i~~i~lD 74 (936)
|.-| ++.......+-.+.||||+.=.+ .|++||++|.||.+|- .-.-..++.+|-.+. --.+.+.| |
T Consensus 161 ~~~f-i~~~k~~pl~~~t~ITcm~tikk~~~d~~a~scLViGTE~~~i~iLd~~af~il~~~~lpsvPv-~i~~~G~~-d 237 (257)
T PF14779_consen 161 REAF-IERYKDSPLKRQTVITCMATIKKSSADEDAVSCLVIGTESGEIYILDPQAFTILKQVQLPSVPV-FISVSGQY-D 237 (257)
T ss_pred HHHH-HHHHhcCCcccCceeEEeeeecccccCCCCcceEEEEecCCeEEEECchhheeEEEEecCCCce-EEEEEeee-e
Confidence 3345 45555555666678999997544 7899999999999999 445556788873211 01122222 2
Q ss_pred CCCCeEEEEeecCCCccEEEE
Q 002318 75 PGGSHCIATIVGSGGAETFYT 95 (936)
Q Consensus 75 p~G~hlli~~~~~~~g~~~Y~ 95 (936)
....-++|++. +|..|-+
T Consensus 238 evdyRI~Va~R---dg~iy~i 255 (257)
T PF14779_consen 238 EVDYRIVVACR---DGKIYTI 255 (257)
T ss_pred ccceEEEEEeC---CCEEEEE
Confidence 23344788888 8888654
No 154
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=85.02 E-value=34 Score=36.20 Aligned_cols=79 Identities=20% Similarity=0.144 Sum_probs=46.6
Q ss_pred eCCEEEEEecCCeEEEEeCCCCCceeeEcCCCCCCccceeEEEeCCCCCeEEEEeecCCCccEEEEecCCCCceeccCC-
Q 002318 30 GNDVIVLGTSKGWLIRHDFGAGDSYDIDLSAGRPGEQSIHKVFVDPGGSHCIATIVGSGGAETFYTHAKWSKPRVLSKL- 108 (936)
Q Consensus 30 ~~n~l~l~~~~g~l~ridl~~~~~~~~~l~~~~~~~~~i~~i~lDp~G~hlli~~~~~~~g~~~Y~~~~~~k~k~L~kl- 108 (936)
.+.+.|.-..+|.|+|+|+.......+.+|. ...+-+++.+..+++|.. .+...+ +....+...+...
T Consensus 11 ~g~l~~~D~~~~~i~~~~~~~~~~~~~~~~~-------~~G~~~~~~~g~l~v~~~---~~~~~~-d~~~g~~~~~~~~~ 79 (246)
T PF08450_consen 11 DGRLYWVDIPGGRIYRVDPDTGEVEVIDLPG-------PNGMAFDRPDGRLYVADS---GGIAVV-DPDTGKVTVLADLP 79 (246)
T ss_dssp TTEEEEEETTTTEEEEEETTTTEEEEEESSS-------EEEEEEECTTSEEEEEET---TCEEEE-ETTTTEEEEEEEEE
T ss_pred CCEEEEEEcCCCEEEEEECCCCeEEEEecCC-------CceEEEEccCCEEEEEEc---CceEEE-ecCCCcEEEEeecc
Confidence 4566677778999999999555555566662 466777733455677765 344434 5555444444332
Q ss_pred ----CCceEEEEEec
Q 002318 109 ----KGLVVNAVAWN 119 (936)
Q Consensus 109 ----kg~~I~sVaw~ 119 (936)
+......++++
T Consensus 80 ~~~~~~~~~ND~~vd 94 (246)
T PF08450_consen 80 DGGVPFNRPNDVAVD 94 (246)
T ss_dssp TTCSCTEEEEEEEE-
T ss_pred CCCcccCCCceEEEc
Confidence 23455556665
No 155
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=84.89 E-value=1.9 Score=37.43 Aligned_cols=47 Identities=13% Similarity=0.199 Sum_probs=28.4
Q ss_pred HHHchhhHHHHHHhcCCh---hhHHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 002318 370 VYLDMKEYAAALANCRDP---LQRDQVYLVQAEAAFATKDFHRAASFYAK 416 (936)
Q Consensus 370 ~ll~~~~f~~Al~~~~~~---~~~~~I~~~~~~~L~~~g~y~~Aa~~y~~ 416 (936)
.|+..|+|++|+++++.. ..-..+....|.-++..|+|++|.+.|.+
T Consensus 34 ~~~~~~~y~~A~~~~~~~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~l~~ 83 (84)
T PF12895_consen 34 CYFQQGKYEEAIELLQKLKLDPSNPDIHYLLARCLLKLGKYEEAIKALEK 83 (84)
T ss_dssp HHHHTTHHHHHHHHHHCHTHHHCHHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHhc
Confidence 456667777777776541 11234555567777777777777776654
No 156
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=84.88 E-value=6.1 Score=43.38 Aligned_cols=155 Identities=12% Similarity=0.190 Sum_probs=99.9
Q ss_pred cCCCceeEEEEe---CCEEEEEecCCeEEEEeC-CCCCceeeEcCCCCCCccceeEEEeCCCCCeEEEEeecCCCccEEE
Q 002318 19 KGRGVITCMSAG---NDVIVLGTSKGWLIRHDF-GAGDSYDIDLSAGRPGEQSIHKVFVDPGGSHCIATIVGSGGAETFY 94 (936)
Q Consensus 19 ~~~~~i~~l~v~---~n~l~l~~~~g~l~ridl-~~~~~~~~~l~~~~~~~~~i~~i~lDp~G~hlli~~~~~~~g~~~Y 94 (936)
=|-|.|+|+-.+ .++|.-+-+.+.|+.+|+ ....+..+-+- .+-+.|.-.|.|....+... -.+.|
T Consensus 185 wG~Dti~svkfNpvETsILas~~sDrsIvLyD~R~~~Pl~KVi~~------mRTN~IswnPeafnF~~a~E----D~nlY 254 (433)
T KOG0268|consen 185 WGADSISSVKFNPVETSILASCASDRSIVLYDLRQASPLKKVILT------MRTNTICWNPEAFNFVAANE----DHNLY 254 (433)
T ss_pred cCCCceeEEecCCCcchheeeeccCCceEEEecccCCccceeeee------ccccceecCccccceeeccc----cccce
Confidence 355777887654 457777878999999999 66666666553 56788999997764444433 33444
Q ss_pred EecCCCCceeccCCCC--ceEEEEEecCCCCCCCCcceEEEEcCCCcEEEEEEecCCcccceeeEEeeeCCCCCceeeEE
Q 002318 95 THAKWSKPRVLSKLKG--LVVNAVAWNRQQITEASTKEIILGTDTGQLHEMAVDEKDKREKYIKLLFELNELPEAFMGLQ 172 (936)
Q Consensus 95 ~~~~~~k~k~L~klkg--~~I~sVaw~~~~~~~~st~~iLiGt~~G~i~e~~i~~~~~~~~~~k~v~~l~~~~~~I~gi~ 172 (936)
.+.-..=-++|.-.+| -.|.+|.|+| ...+|+-|+-+-.|=.+..+.+. -+.+|...-+ ..|.++.
T Consensus 255 ~~DmR~l~~p~~v~~dhvsAV~dVdfsp------tG~EfvsgsyDksIRIf~~~~~~-----SRdiYhtkRM-q~V~~Vk 322 (433)
T KOG0268|consen 255 TYDMRNLSRPLNVHKDHVSAVMDVDFSP------TGQEFVSGSYDKSIRIFPVNHGH-----SRDIYHTKRM-QHVFCVK 322 (433)
T ss_pred ehhhhhhcccchhhcccceeEEEeccCC------CcchhccccccceEEEeecCCCc-----chhhhhHhhh-heeeEEE
Confidence 4321111133443444 4788999983 23589999988877777665442 2334444322 3488999
Q ss_pred EEeeccCCCceEEEEEECCCeEEEEecC
Q 002318 173 METASLSNGTRYYVMAVTPTRLYSFTGF 200 (936)
Q Consensus 173 ~~~~~~~~~~~~~i~ast~~rly~f~~~ 200 (936)
|.. +.++++-.|....+--|.+.
T Consensus 323 ~S~-----Dskyi~SGSdd~nvRlWka~ 345 (433)
T KOG0268|consen 323 YSM-----DSKYIISGSDDGNVRLWKAK 345 (433)
T ss_pred Eec-----cccEEEecCCCcceeeeecc
Confidence 973 45788877777777778765
No 157
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=84.65 E-value=4.6 Score=45.95 Aligned_cols=151 Identities=15% Similarity=0.148 Sum_probs=101.0
Q ss_pred hHHHHHhhcCCCceeEEEEe--CCEEEEEecCCeEEEEeC-CCCCceeeEcCCCCCCccceeEEEeCCCCCeEEEEeecC
Q 002318 11 DVLERYAAKGRGVITCMSAG--NDVIVLGTSKGWLIRHDF-GAGDSYDIDLSAGRPGEQSIHKVFVDPGGSHCIATIVGS 87 (936)
Q Consensus 11 ~~~~~~~~~~~~~i~~l~v~--~n~l~l~~~~g~l~ridl-~~~~~~~~~l~~~~~~~~~i~~i~lDp~G~hlli~~~~~ 87 (936)
+++.|+|+--.|-++|+.++ +--||-|--+++|-.||+ ..-++.+.++. +.|-.+---|+|..++|-|.
T Consensus 541 q~~VrqfqGhtDGascIdis~dGtklWTGGlDntvRcWDlregrqlqqhdF~------SQIfSLg~cP~~dWlavGMe-- 612 (705)
T KOG0639|consen 541 QTLVRQFQGHTDGASCIDISKDGTKLWTGGLDNTVRCWDLREGRQLQQHDFS------SQIFSLGYCPTGDWLAVGME-- 612 (705)
T ss_pred ceeeecccCCCCCceeEEecCCCceeecCCCccceeehhhhhhhhhhhhhhh------hhheecccCCCccceeeecc--
Confidence 35667777777889999999 558898888889999999 66666666654 44555566899999999999
Q ss_pred CCccEEEEecCCCCceeccCCCCceEEEEEecCCCCCCCCcceEEEEcCCCcEEEEEEecCCcccceeeEEeeeCCCCCc
Q 002318 88 GGAETFYTHAKWSKPRVLSKLKGLVVNAVAWNRQQITEASTKEIILGTDTGQLHEMAVDEKDKREKYIKLLFELNELPEA 167 (936)
Q Consensus 88 ~~g~~~Y~~~~~~k~k~L~klkg~~I~sVaw~~~~~~~~st~~iLiGt~~G~i~e~~i~~~~~~~~~~k~v~~l~~~~~~ 167 (936)
++.+..+|..-+.-..|. ++.--|-|+-|. ..|...+.|-+-.++-.. .-.|=..+|+.++. ++
T Consensus 613 -ns~vevlh~skp~kyqlh-lheScVLSlKFa-------~cGkwfvStGkDnlLnaw------rtPyGasiFqskE~-Ss 676 (705)
T KOG0639|consen 613 -NSNVEVLHTSKPEKYQLH-LHESCVLSLKFA-------YCGKWFVSTGKDNLLNAW------RTPYGASIFQSKES-SS 676 (705)
T ss_pred -cCcEEEEecCCccceeec-ccccEEEEEEec-------ccCceeeecCchhhhhhc------cCccccceeecccc-Cc
Confidence 898888887665545554 466778888887 234566655432222111 01223456777764 57
Q ss_pred eeeEEEEeeccCCCceEEEEEEC
Q 002318 168 FMGLQMETASLSNGTRYYVMAVT 190 (936)
Q Consensus 168 I~gi~~~~~~~~~~~~~~i~ast 190 (936)
|++--+.. +.++||--|.
T Consensus 677 VlsCDIS~-----ddkyIVTGSG 694 (705)
T KOG0639|consen 677 VLSCDISF-----DDKYIVTGSG 694 (705)
T ss_pred ceeeeecc-----CceEEEecCC
Confidence 87766653 2356665444
No 158
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=84.62 E-value=4.1 Score=46.20 Aligned_cols=150 Identities=8% Similarity=0.127 Sum_probs=96.7
Q ss_pred ceeEEEEeCC---EEEEEecCCeEEEEeC-C-CCCceeeEcCCCCCCccceeEEEeCCCCCeEEEEeecCCCccEEEEec
Q 002318 23 VITCMSAGND---VIVLGTSKGWLIRHDF-G-AGDSYDIDLSAGRPGEQSIHKVFVDPGGSHCIATIVGSGGAETFYTHA 97 (936)
Q Consensus 23 ~i~~l~v~~n---~l~l~~~~g~l~ridl-~-~~~~~~~~l~~~~~~~~~i~~i~lDp~G~hlli~~~~~~~g~~~Y~~~ 97 (936)
.|+++..-.. .+.=+.-+|.|+.|++ + ..-+..+.-+ ...|..+-..+.|.-.+.++= ++..-++..
T Consensus 216 gvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~~~lrtf~gH-----~k~Vrd~~~s~~g~~fLS~sf---D~~lKlwDt 287 (503)
T KOG0282|consen 216 GVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDRRCLRTFKGH-----RKPVRDASFNNCGTSFLSASF---DRFLKLWDT 287 (503)
T ss_pred ccchhhhccceeeEEEecCCCceEEEEEEecCcceehhhhcc-----hhhhhhhhccccCCeeeeeec---ceeeeeecc
Confidence 3555555443 3333445678999999 3 5556667666 356788888889988887765 565556655
Q ss_pred CCCCceeccCC-CCceEEEEEecCCCCCCCCcceEEEEcCCCcEEEEEEecCCcccceeeEEeeeCCCCCceeeEEEEee
Q 002318 98 KWSKPRVLSKL-KGLVVNAVAWNRQQITEASTKEIILGTDTGQLHEMAVDEKDKREKYIKLLFELNELPEAFMGLQMETA 176 (936)
Q Consensus 98 ~~~k~k~L~kl-kg~~I~sVaw~~~~~~~~st~~iLiGt~~G~i~e~~i~~~~~~~~~~k~v~~l~~~~~~I~gi~~~~~ 176 (936)
..-++ +.++ -|+.+.||-++++. -..||+|+.+|.|....+..++-...|-+. | ++|..|.+..
T Consensus 288 ETG~~--~~~f~~~~~~~cvkf~pd~-----~n~fl~G~sd~ki~~wDiRs~kvvqeYd~h---L----g~i~~i~F~~- 352 (503)
T KOG0282|consen 288 ETGQV--LSRFHLDKVPTCVKFHPDN-----QNIFLVGGSDKKIRQWDIRSGKVVQEYDRH---L----GAILDITFVD- 352 (503)
T ss_pred ccceE--EEEEecCCCceeeecCCCC-----CcEEEEecCCCcEEEEeccchHHHHHHHhh---h----hheeeeEEcc-
Confidence 44433 3333 37899999999654 348999999999999888665311111111 2 5688888873
Q ss_pred ccCCCceEEEEEECCCeEEEEec
Q 002318 177 SLSNGTRYYVMAVTPTRLYSFTG 199 (936)
Q Consensus 177 ~~~~~~~~~i~ast~~rly~f~~ 199 (936)
+.+.+|-.|....+.-|..
T Consensus 353 ----~g~rFissSDdks~riWe~ 371 (503)
T KOG0282|consen 353 ----EGRRFISSSDDKSVRIWEN 371 (503)
T ss_pred ----CCceEeeeccCccEEEEEc
Confidence 2356776666555555654
No 159
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=84.51 E-value=58 Score=34.40 Aligned_cols=161 Identities=18% Similarity=0.219 Sum_probs=90.1
Q ss_pred eEEEEe--CCEEEEEecCCeEEEEeCCCCCceee-EcCCCCCCccceeEEEeCCCCCeEEEEeecC----CC--ccEEEE
Q 002318 25 TCMSAG--NDVIVLGTSKGWLIRHDFGAGDSYDI-DLSAGRPGEQSIHKVFVDPGGSHCIATIVGS----GG--AETFYT 95 (936)
Q Consensus 25 ~~l~v~--~n~l~l~~~~g~l~ridl~~~~~~~~-~l~~~~~~~~~i~~i~lDp~G~hlli~~~~~----~~--g~~~Y~ 95 (936)
..+++. ++.++++...|.. ++|+...++..+ ..+.........+.+.+||.|. +.++.... .. |..|++
T Consensus 43 ~G~~~~~~~g~l~v~~~~~~~-~~d~~~g~~~~~~~~~~~~~~~~~~ND~~vd~~G~-ly~t~~~~~~~~~~~~g~v~~~ 120 (246)
T PF08450_consen 43 NGMAFDRPDGRLYVADSGGIA-VVDPDTGKVTVLADLPDGGVPFNRPNDVAVDPDGN-LYVTDSGGGGASGIDPGSVYRI 120 (246)
T ss_dssp EEEEEECTTSEEEEEETTCEE-EEETTTTEEEEEEEEETTCSCTEEEEEEEE-TTS--EEEEEECCBCTTCGGSEEEEEE
T ss_pred ceEEEEccCCEEEEEEcCceE-EEecCCCcEEEEeeccCCCcccCCCceEEEcCCCC-EEEEecCCCccccccccceEEE
Confidence 455555 7888888876554 448833344333 3321221246889999999998 55543311 01 668888
Q ss_pred ecCCCCceeccCCCCceEEEEEecCCCCCCCCcceEEE-EcCCCcEEEEEEecCCcccceeeEEeeeCCCCCceeeEEEE
Q 002318 96 HAKWSKPRVLSKLKGLVVNAVAWNRQQITEASTKEIIL-GTDTGQLHEMAVDEKDKREKYIKLLFELNELPEAFMGLQME 174 (936)
Q Consensus 96 ~~~~~k~k~L~klkg~~I~sVaw~~~~~~~~st~~iLi-Gt~~G~i~e~~i~~~~~~~~~~k~v~~l~~~~~~I~gi~~~ 174 (936)
... .+.+.+.. .-..-..++|++.. +.+.+ -|..+.|+.+.++.....-...+.++.++...+...|+.+.
T Consensus 121 ~~~-~~~~~~~~-~~~~pNGi~~s~dg------~~lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD 192 (246)
T PF08450_consen 121 DPD-GKVTVVAD-GLGFPNGIAFSPDG------KTLYVADSFNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVD 192 (246)
T ss_dssp ETT-SEEEEEEE-EESSEEEEEEETTS------SEEEEEETTTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEB
T ss_pred CCC-CeEEEEec-CcccccceEECCcc------hheeecccccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEc
Confidence 877 44444331 11345689999431 23443 46779999999975422122234445666533347899997
Q ss_pred eeccCCCceEEEEEECCCeEEEEecC
Q 002318 175 TASLSNGTRYYVMAVTPTRLYSFTGF 200 (936)
Q Consensus 175 ~~~~~~~~~~~i~ast~~rly~f~~~ 200 (936)
. +.+..+-.....+++.|...
T Consensus 193 ~-----~G~l~va~~~~~~I~~~~p~ 213 (246)
T PF08450_consen 193 S-----DGNLWVADWGGGRIVVFDPD 213 (246)
T ss_dssp T-----TS-EEEEEETTTEEEEEETT
T ss_pred C-----CCCEEEEEcCCCEEEEECCC
Confidence 3 11222222257889888654
No 160
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=84.35 E-value=42 Score=38.59 Aligned_cols=142 Identities=12% Similarity=0.160 Sum_probs=76.0
Q ss_pred CEEEEEecC---CeEEEEeCCCCCceeeEcCCCCCCccceeEEEeCCCCCeEEEEeecCCCccEEEEecCCCCceeccCC
Q 002318 32 DVIVLGTSK---GWLIRHDFGAGDSYDIDLSAGRPGEQSIHKVFVDPGGSHCIATIVGSGGAETFYTHAKWSKPRVLSKL 108 (936)
Q Consensus 32 n~l~l~~~~---g~l~ridl~~~~~~~~~l~~~~~~~~~i~~i~lDp~G~hlli~~~~~~~g~~~Y~~~~~~k~k~L~kl 108 (936)
+.|+.+... ..|+++|+.......+.-. ...+......|.|.++++++...++.+.|+++....+.+.|...
T Consensus 202 ~~la~~~~~~~~~~i~v~d~~~g~~~~~~~~-----~~~~~~~~~spDg~~l~~~~~~~~~~~i~~~d~~~~~~~~l~~~ 276 (417)
T TIGR02800 202 QKLAYVSFESGKPEIYVQDLATGQREKVASF-----PGMNGAPAFSPDGSKLAVSLSKDGNPDIYVMDLDGKQLTRLTNG 276 (417)
T ss_pred CEEEEEEcCCCCcEEEEEECCCCCEEEeecC-----CCCccceEECCCCCEEEEEECCCCCccEEEEECCCCCEEECCCC
Confidence 345544432 4799999932222222211 12334466789999988876532344677777766666777653
Q ss_pred CCceEEEEEecCCCCCCCCcceEEEEcCC-C--cEEEEEEecCCcccceeeEEeeeCCCCCceeeEEEEeeccCCCceEE
Q 002318 109 KGLVVNAVAWNRQQITEASTKEIILGTDT-G--QLHEMAVDEKDKREKYIKLLFELNELPEAFMGLQMETASLSNGTRYY 185 (936)
Q Consensus 109 kg~~I~sVaw~~~~~~~~st~~iLiGt~~-G--~i~e~~i~~~~~~~~~~k~v~~l~~~~~~I~gi~~~~~~~~~~~~~~ 185 (936)
.+ ...+.+|.++ .+.|++.+.+ | .||...+..++ .+.+ ...+ ..+....|.. +.+.+
T Consensus 277 ~~-~~~~~~~s~d------g~~l~~~s~~~g~~~iy~~d~~~~~-----~~~l-~~~~--~~~~~~~~sp-----dg~~i 336 (417)
T TIGR02800 277 PG-IDTEPSWSPD------GKSIAFTSDRGGSPQIYMMDADGGE-----VRRL-TFRG--GYNASPSWSP-----DGDLI 336 (417)
T ss_pred CC-CCCCEEECCC------CCEEEEEECCCCCceEEEEECCCCC-----EEEe-ecCC--CCccCeEECC-----CCCEE
Confidence 32 3457788742 2366666544 3 57777665431 2232 1121 2345555542 22566
Q ss_pred EEEECCC---eEEEEe
Q 002318 186 VMAVTPT---RLYSFT 198 (936)
Q Consensus 186 i~ast~~---rly~f~ 198 (936)
++++... ++|.+.
T Consensus 337 ~~~~~~~~~~~i~~~d 352 (417)
T TIGR02800 337 AFVHREGGGFNIAVMD 352 (417)
T ss_pred EEEEccCCceEEEEEe
Confidence 6655543 666554
No 161
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=84.24 E-value=56 Score=35.25 Aligned_cols=153 Identities=10% Similarity=0.152 Sum_probs=95.5
Q ss_pred CCcCCcceehhHH--------HHHhhcCCCceeEEE-EeCCEEEEEecCCeEEEEeC-CCCCceeeEcCCCCCCccceeE
Q 002318 1 MDLMRQVFQVDVL--------ERYAAKGRGVITCMS-AGNDVIVLGTSKGWLIRHDF-GAGDSYDIDLSAGRPGEQSIHK 70 (936)
Q Consensus 1 ~~~~~~~f~~~~~--------~~~~~~~~~~i~~l~-v~~n~l~l~~~~g~l~ridl-~~~~~~~~~l~~~~~~~~~i~~ 70 (936)
+||.-.+|.|.+. .+.++--.+-++|-. +.++.+.-|..+.+.-.||+ .+..+..+.=| .+-|-.
T Consensus 117 LdN~Csiy~ls~~d~~g~~~v~r~l~gHtgylScC~f~dD~~ilT~SGD~TCalWDie~g~~~~~f~GH-----~gDV~s 191 (343)
T KOG0286|consen 117 LDNKCSIYPLSTRDAEGNVRVSRELAGHTGYLSCCRFLDDNHILTGSGDMTCALWDIETGQQTQVFHGH-----TGDVMS 191 (343)
T ss_pred cCceeEEEecccccccccceeeeeecCccceeEEEEEcCCCceEecCCCceEEEEEcccceEEEEecCC-----cccEEE
Confidence 4666677777644 222322223344443 34566777778888999999 77767666544 356788
Q ss_pred EEeCC-CCCeEEEEeecCCCccEEEEecCCCCceeccCCCC--ceEEEEEecCCCCCCCCcceEEEEcCCCcEEEEEEec
Q 002318 71 VFVDP-GGSHCIATIVGSGGAETFYTHAKWSKPRVLSKLKG--LVVNAVAWNRQQITEASTKEIILGTDTGQLHEMAVDE 147 (936)
Q Consensus 71 i~lDp-~G~hlli~~~~~~~g~~~Y~~~~~~k~k~L~klkg--~~I~sVaw~~~~~~~~st~~iLiGt~~G~i~e~~i~~ 147 (936)
+-+-| +|+..+.+.- ++.-+-+.......++- +.| .+|.+|.|.|+ .-.|..|+.+|..=-+.|-.
T Consensus 192 lsl~p~~~ntFvSg~c---D~~aklWD~R~~~c~qt--F~ghesDINsv~ffP~------G~afatGSDD~tcRlyDlRa 260 (343)
T KOG0286|consen 192 LSLSPSDGNTFVSGGC---DKSAKLWDVRSGQCVQT--FEGHESDINSVRFFPS------GDAFATGSDDATCRLYDLRA 260 (343)
T ss_pred EecCCCCCCeEEeccc---ccceeeeeccCcceeEe--ecccccccceEEEccC------CCeeeecCCCceeEEEeecC
Confidence 88888 6654444333 67777777666554442 344 58999999953 23899999999877776654
Q ss_pred CCcccceeeEEeeeCCCCCceeeEEEE
Q 002318 148 KDKREKYIKLLFELNELPEAFMGLQME 174 (936)
Q Consensus 148 ~~~~~~~~k~v~~l~~~~~~I~gi~~~ 174 (936)
. +.+ .+|+-+..-.||+++.+.
T Consensus 261 D----~~~-a~ys~~~~~~gitSv~FS 282 (343)
T KOG0286|consen 261 D----QEL-AVYSHDSIICGITSVAFS 282 (343)
T ss_pred C----cEE-eeeccCcccCCceeEEEc
Confidence 3 222 234433333567877775
No 162
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=83.93 E-value=17 Score=40.36 Aligned_cols=98 Identities=17% Similarity=0.161 Sum_probs=62.6
Q ss_pred ccceeEEEeCCCCCeEEEEeecCCCccEEEEecCCCCceeccCCCCceEEEEEecCCCCCCCCcceEEEEcCCCcEEEEE
Q 002318 65 EQSIHKVFVDPGGSHCIATIVGSGGAETFYTHAKWSKPRVLSKLKGLVVNAVAWNRQQITEASTKEIILGTDTGQLHEMA 144 (936)
Q Consensus 65 ~~~i~~i~lDp~G~hlli~~~~~~~g~~~Y~~~~~~k~k~L~klkg~~I~sVaw~~~~~~~~st~~iLiGt~~G~i~e~~ 144 (936)
.+.|..+-..|+|.++..-+. |..+-.+......+...-|-...=|-||+|.|+. ..|.-|+.+|.|....
T Consensus 115 ~e~Vl~~~fsp~g~~l~tGsG---D~TvR~WD~~TeTp~~t~KgH~~WVlcvawsPDg------k~iASG~~dg~I~lwd 185 (480)
T KOG0271|consen 115 GEAVLSVQFSPTGSRLVTGSG---DTTVRLWDLDTETPLFTCKGHKNWVLCVAWSPDG------KKIASGSKDGSIRLWD 185 (480)
T ss_pred CCcEEEEEecCCCceEEecCC---CceEEeeccCCCCcceeecCCccEEEEEEECCCc------chhhccccCCeEEEec
Confidence 478999999999998776443 5666666665543333222223579999999542 3777899999887654
Q ss_pred EecCCcccceeeEEeeeCCCCCceeeEEEEeec
Q 002318 145 VDEKDKREKYIKLLFELNELPEAFMGLQMETAS 177 (936)
Q Consensus 145 i~~~~~~~~~~k~v~~l~~~~~~I~gi~~~~~~ 177 (936)
-+.+ +++-+. |++-...|+++.|++.-
T Consensus 186 pktg---~~~g~~---l~gH~K~It~Lawep~h 212 (480)
T KOG0271|consen 186 PKTG---QQIGRA---LRGHKKWITALAWEPLH 212 (480)
T ss_pred CCCC---Cccccc---ccCcccceeEEeecccc
Confidence 3322 222222 33222459999998653
No 163
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=83.71 E-value=2.7 Score=52.37 Aligned_cols=167 Identities=13% Similarity=0.173 Sum_probs=97.8
Q ss_pred HhhcCCCceeEEEE---eCCEEEEEecCCeEEEEeC-CCCCceeeEcCCCCCCccceeEEEeCCCCCeEEEEeecCCCcc
Q 002318 16 YAAKGRGVITCMSA---GNDVIVLGTSKGWLIRHDF-GAGDSYDIDLSAGRPGEQSIHKVFVDPGGSHCIATIVGSGGAE 91 (936)
Q Consensus 16 ~~~~~~~~i~~l~v---~~n~l~l~~~~g~l~ridl-~~~~~~~~~l~~~~~~~~~i~~i~lDp~G~hlli~~~~~~~g~ 91 (936)
...+-.+.|..+.+ ++|+|+=|-.+|.|+.||| +|+...... +....+.|..+.=.-.-.|++.+..+ +|.
T Consensus 111 ~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~iWDlnn~~tP~~~~---~~~~~~eI~~lsWNrkvqhILAS~s~--sg~ 185 (1049)
T KOG0307|consen 111 TKSKHTGPVLGLDFNPFQGNLLASGADDGEILIWDLNKPETPFTPG---SQAPPSEIKCLSWNRKVSHILASGSP--SGR 185 (1049)
T ss_pred hhcccCCceeeeeccccCCceeeccCCCCcEEEeccCCcCCCCCCC---CCCCcccceEeccchhhhHHhhccCC--CCC
Confidence 33444566777766 4679999999999999999 766643221 11123567777777888899988763 566
Q ss_pred EEEEecCCCC-ceeccCCCC-ceEEEEEecCCCCCCCCcceEEEEcCC-CcEEEEEEecCCcccceeeEEeeeCCCCCce
Q 002318 92 TFYTHAKWSK-PRVLSKLKG-LVVNAVAWNRQQITEASTKEIILGTDT-GQLHEMAVDEKDKREKYIKLLFELNELPEAF 168 (936)
Q Consensus 92 ~~Y~~~~~~k-~k~L~klkg-~~I~sVaw~~~~~~~~st~~iLiGt~~-G~i~e~~i~~~~~~~~~~k~v~~l~~~~~~I 168 (936)
.-.+..+.++ +-.++..-| +.+.+|+|+++.. | .+++.+.+ +.=..-.++-+. ...-+|. ++... ..|
T Consensus 186 ~~iWDlr~~~pii~ls~~~~~~~~S~l~WhP~~a----T-ql~~As~dd~~PviqlWDlR~-assP~k~-~~~H~--~Gi 256 (1049)
T KOG0307|consen 186 AVIWDLRKKKPIIKLSDTPGRMHCSVLAWHPDHA----T-QLLVASGDDSAPVIQLWDLRF-ASSPLKI-LEGHQ--RGI 256 (1049)
T ss_pred ceeccccCCCcccccccCCCccceeeeeeCCCCc----e-eeeeecCCCCCceeEeecccc-cCCchhh-hcccc--cce
Confidence 6677665543 223444334 6789999996542 2 78888765 322222233220 0001222 34444 338
Q ss_pred eeEEEEeeccCCCceEEEEEECCCeEEEEecC
Q 002318 169 MGLQMETASLSNGTRYYVMAVTPTRLYSFTGF 200 (936)
Q Consensus 169 ~gi~~~~~~~~~~~~~~i~ast~~rly~f~~~ 200 (936)
.++.|... +.++++--.-+.|++.|...
T Consensus 257 lslsWc~~----D~~lllSsgkD~~ii~wN~~ 284 (1049)
T KOG0307|consen 257 LSLSWCPQ----DPRLLLSSGKDNRIICWNPN 284 (1049)
T ss_pred eeeccCCC----CchhhhcccCCCCeeEecCC
Confidence 99999742 22233321126788888653
No 164
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=83.71 E-value=8.4 Score=48.19 Aligned_cols=202 Identities=12% Similarity=0.123 Sum_probs=111.4
Q ss_pred CEEEEEecCCeEEEEeCCCC-CceeeEc-CCCCCCccceeEEEeCCCCCeEEEEeecCCCccEEEEecCCCC-ceeccCC
Q 002318 32 DVIVLGTSKGWLIRHDFGAG-DSYDIDL-SAGRPGEQSIHKVFVDPGGSHCIATIVGSGGAETFYTHAKWSK-PRVLSKL 108 (936)
Q Consensus 32 n~l~l~~~~g~l~ridl~~~-~~~~~~l-~~~~~~~~~i~~i~lDp~G~hlli~~~~~~~g~~~Y~~~~~~k-~k~L~kl 108 (936)
++++-|+.+|.|..+|..+. .-.++++ -..+.-.+.|..+-+.|.+..++.+.. ++|+.|.++.+..+ +-.....
T Consensus 81 GlIaGG~edG~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa--~~geI~iWDlnn~~tP~~~~~~ 158 (1049)
T KOG0307|consen 81 GLIAGGLEDGNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQGNLLASGA--DDGEILIWDLNKPETPFTPGSQ 158 (1049)
T ss_pred ceeeccccCCceEEecchhhccCcchHHHhhhcccCCceeeeeccccCCceeeccC--CCCcEEEeccCCcCCCCCCCCC
Confidence 36888999999999998332 1111211 111111478999999999886665533 38999999865532 2222111
Q ss_pred -CCceEEEEEecCCCCCCCCcceEEEE-cCCCcEEEEEEecCCcccceeeEEeeeCCCC--CceeeEEEEeeccCCCceE
Q 002318 109 -KGLVVNAVAWNRQQITEASTKEIILG-TDTGQLHEMAVDEKDKREKYIKLLFELNELP--EAFMGLQMETASLSNGTRY 184 (936)
Q Consensus 109 -kg~~I~sVaw~~~~~~~~st~~iLiG-t~~G~i~e~~i~~~~~~~~~~k~v~~l~~~~--~~I~gi~~~~~~~~~~~~~ 184 (936)
.--.|++++||+.. ..||.. +.+|....-.+.. -+++.++.+.+ .-+.+|.|.. +....
T Consensus 159 ~~~~eI~~lsWNrkv------qhILAS~s~sg~~~iWDlr~-------~~pii~ls~~~~~~~~S~l~WhP----~~aTq 221 (1049)
T KOG0307|consen 159 APPSEIKCLSWNRKV------SHILASGSPSGRAVIWDLRK-------KKPIIKLSDTPGRMHCSVLAWHP----DHATQ 221 (1049)
T ss_pred CCcccceEeccchhh------hHHhhccCCCCCceeccccC-------CCcccccccCCCccceeeeeeCC----CCcee
Confidence 12489999999432 255553 3456444333322 15566666532 2267899984 44567
Q ss_pred EEEEECCCe---EEEEecC--CchHHHHhhhhcccccccccCCCcCCCcceeeeccCCCceEEEeecCceEEEEecc
Q 002318 185 YVMAVTPTR---LYSFTGF--GSLDTVFASYLDRAVHFMELPGEILNSELHFFIKQRRAVHFAWLSGAGIYHGGLNF 256 (936)
Q Consensus 185 ~i~ast~~r---ly~f~~~--~~l~~~f~~~~~~~~~~~el~~~~~~s~~~~~~~~~~~~~faW~t~~gi~~g~i~~ 256 (936)
+++||...+ +--|+=+ .+-.++|..+.. .+.-+.+......+.+..+ .....+.|-.++|=++|.+..
T Consensus 222 l~~As~dd~~PviqlWDlR~assP~k~~~~H~~---GilslsWc~~D~~lllSsg-kD~~ii~wN~~tgEvl~~~p~ 294 (1049)
T KOG0307|consen 222 LLVASGDDSAPVIQLWDLRFASSPLKILEGHQR---GILSLSWCPQDPRLLLSSG-KDNRIICWNPNTGEVLGELPA 294 (1049)
T ss_pred eeeecCCCCCceeEeecccccCCchhhhccccc---ceeeeccCCCCchhhhccc-CCCCeeEecCCCceEeeecCC
Confidence 777776432 3335422 111222221111 1222333322222333322 336789999999999998876
No 165
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=83.65 E-value=25 Score=37.19 Aligned_cols=122 Identities=12% Similarity=0.139 Sum_probs=79.5
Q ss_pred EeCCEEEEEecCCeEEEEeC-CCCCceeeEcCCCCCCccceeEEEeCCCCCeEEEEeecCCCccEEEEecCCC-Cceecc
Q 002318 29 AGNDVIVLGTSKGWLIRHDF-GAGDSYDIDLSAGRPGEQSIHKVFVDPGGSHCIATIVGSGGAETFYTHAKWS-KPRVLS 106 (936)
Q Consensus 29 v~~n~l~l~~~~g~l~ridl-~~~~~~~~~l~~~~~~~~~i~~i~lDp~G~hlli~~~~~~~g~~~Y~~~~~~-k~k~L~ 106 (936)
-.|++.++...+|.|-++.. .=..++.|.-|. +--..|-+||.|+|+.+-+. +..+--+..+-- =.|.++
T Consensus 157 ~~nd~Fflt~GlG~v~ILsypsLkpv~si~AH~-----snCicI~f~p~GryfA~GsA---DAlvSLWD~~ELiC~R~is 228 (313)
T KOG1407|consen 157 NSNDLFFLTNGLGCVEILSYPSLKPVQSIKAHP-----SNCICIEFDPDGRYFATGSA---DALVSLWDVDELICERCIS 228 (313)
T ss_pred CCCCEEEEecCCceEEEEeccccccccccccCC-----cceEEEEECCCCceEeeccc---cceeeccChhHhhhheeec
Confidence 56777777777799998876 334466676663 23466778999999998776 555544433221 246677
Q ss_pred CCCCceEEEEEecCCCCCCCCcceEEE-EcCCCcEEEEEEecCCcccceeeEEeeeCCCCCceeeEEEE
Q 002318 107 KLKGLVVNAVAWNRQQITEASTKEIIL-GTDTGQLHEMAVDEKDKREKYIKLLFELNELPEAFMGLQME 174 (936)
Q Consensus 107 klkg~~I~sVaw~~~~~~~~st~~iLi-Gt~~G~i~e~~i~~~~~~~~~~k~v~~l~~~~~~I~gi~~~ 174 (936)
++ ..+|+.+.|+.+ |++|- |+++-.|=.+.++.+ .++++++- .+|--.+.|.
T Consensus 229 Rl-dwpVRTlSFS~d-------g~~lASaSEDh~IDIA~vetG-------d~~~eI~~-~~~t~tVAWH 281 (313)
T KOG1407|consen 229 RL-DWPVRTLSFSHD-------GRMLASASEDHFIDIAEVETG-------DRVWEIPC-EGPTFTVAWH 281 (313)
T ss_pred cc-cCceEEEEeccC-------cceeeccCccceEEeEecccC-------CeEEEeec-cCCceeEEec
Confidence 75 689999999842 34444 555665555666554 23556653 2667888887
No 166
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=83.13 E-value=4.5 Score=42.48 Aligned_cols=73 Identities=8% Similarity=0.140 Sum_probs=51.2
Q ss_pred ceeEEEEeCCEEEEEecCCeEEEEeC-CCCCc-eeeEc-CCCC-------CCccceeEEEeCCCCCeEEEEeecCCCccE
Q 002318 23 VITCMSAGNDVIVLGTSKGWLIRHDF-GAGDS-YDIDL-SAGR-------PGEQSIHKVFVDPGGSHCIATIVGSGGAET 92 (936)
Q Consensus 23 ~i~~l~v~~n~l~l~~~~g~l~ridl-~~~~~-~~~~l-~~~~-------~~~~~i~~i~lDp~G~hlli~~~~~~~g~~ 92 (936)
.++.|...++.|...|.+|.++.||+ ...-+ ..+.+ |.-. .....|..+.++.+|.-+++-+ +|+.
T Consensus 14 ~~~~l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~ls----ng~~ 89 (219)
T PF07569_consen 14 PVSFLECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLS----NGDS 89 (219)
T ss_pred ceEEEEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEe----CCCE
Confidence 57889999999999999999999999 32221 11111 1011 2357899999999998655544 5888
Q ss_pred EEEecCC
Q 002318 93 FYTHAKW 99 (936)
Q Consensus 93 ~Y~~~~~ 99 (936)
|..+.+.
T Consensus 90 y~y~~~L 96 (219)
T PF07569_consen 90 YSYSPDL 96 (219)
T ss_pred EEecccc
Confidence 8776543
No 167
>KOG4445 consensus Uncharacterized conserved protein, contains RWD domain [Function unknown]
Probab=82.99 E-value=0.59 Score=49.41 Aligned_cols=64 Identities=20% Similarity=0.419 Sum_probs=47.2
Q ss_pred ccccccccchhhhhcccccccccccCCCCCCCCEEEEcCCChhHHHhHHHHHhhcCCccchHHHHHHHhhhccCCccccc
Q 002318 832 RDEDCGVCRRKILVAGRDYRMARGYASVGPMAPFYVFPCGHAFHAQCLIAHVTQCTNETQVSVVDIVLSYKRLQSGWNTV 911 (936)
Q Consensus 832 ~~~~C~~C~k~L~~~~~~~~~~~~~~~~~~~~~fvvFpCgH~fH~~CL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 911 (936)
|+..|.+|---+.. . ..|.+-+|-|.||..||.+++......-+..+.+.++......+-+.++
T Consensus 114 p~gqCvICLygfa~-----~-----------~~ft~T~C~Hy~H~~ClaRyl~~~~~~lrqe~q~~~~~~qh~~~~~eav 177 (368)
T KOG4445|consen 114 PNGQCVICLYGFAS-----S-----------PAFTVTACDHYMHFACLARYLTECLTGLRQEIQDAQKERQHMKEQVEAV 177 (368)
T ss_pred CCCceEEEEEeecC-----C-----------CceeeehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhh
Confidence 67789999766655 2 2599999999999999999998877765555666666555555555544
No 168
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=82.90 E-value=19 Score=40.32 Aligned_cols=151 Identities=10% Similarity=0.044 Sum_probs=88.7
Q ss_pred CceeEEEEeCCEEEEE--ecCCeEEEEeCCCCCceeeEcCCC-CCCccceeEEEeCCCCCeEEEEeecCCCccEEEEecC
Q 002318 22 GVITCMSAGNDVIVLG--TSKGWLIRHDFGAGDSYDIDLSAG-RPGEQSIHKVFVDPGGSHCIATIVGSGGAETFYTHAK 98 (936)
Q Consensus 22 ~~i~~l~v~~n~l~l~--~~~g~l~ridl~~~~~~~~~l~~~-~~~~~~i~~i~lDp~G~hlli~~~~~~~g~~~Y~~~~ 98 (936)
|.|--+..++|==++| ....+...++..++. ++.+-+. -+-..+|.-|--.|.-++++.|.. +-...-++..
T Consensus 225 dEVWfl~FS~nGkyLAsaSkD~Taiiw~v~~d~--~~kl~~tlvgh~~~V~yi~wSPDdryLlaCg~---~e~~~lwDv~ 299 (519)
T KOG0293|consen 225 DEVWFLQFSHNGKYLASASKDSTAIIWIVVYDV--HFKLKKTLVGHSQPVSYIMWSPDDRYLLACGF---DEVLSLWDVD 299 (519)
T ss_pred CcEEEEEEcCCCeeEeeccCCceEEEEEEecCc--ceeeeeeeecccCceEEEEECCCCCeEEecCc---hHheeeccCC
Confidence 4566667777654444 455667777662222 1333322 011357888888999999999987 4444444544
Q ss_pred CCCcee-ccCCCCceEEEEEecCCCCCCCCcceEEEEcCCCcEEEEEEecCCcccceeeEEeeeCCCCCceeeEEEEeec
Q 002318 99 WSKPRV-LSKLKGLVVNAVAWNRQQITEASTKEIILGTDTGQLHEMAVDEKDKREKYIKLLFELNELPEAFMGLQMETAS 177 (936)
Q Consensus 99 ~~k~k~-L~klkg~~I~sVaw~~~~~~~~st~~iLiGt~~G~i~e~~i~~~~~~~~~~k~v~~l~~~~~~I~gi~~~~~~ 177 (936)
..-.+. .++--|..+.|+||+|+ ...|+.|..++.|+-..++++. ...|+-+ ..| .|..+.+..
T Consensus 300 tgd~~~~y~~~~~~S~~sc~W~pD------g~~~V~Gs~dr~i~~wdlDgn~--~~~W~gv-r~~----~v~dlait~-- 364 (519)
T KOG0293|consen 300 TGDLRHLYPSGLGFSVSSCAWCPD------GFRFVTGSPDRTIIMWDLDGNI--LGNWEGV-RDP----KVHDLAITY-- 364 (519)
T ss_pred cchhhhhcccCcCCCcceeEEccC------CceeEecCCCCcEEEecCCcch--hhccccc-ccc----eeEEEEEcC--
Confidence 432222 22212578999999964 3479999999999998887751 1111111 111 255565542
Q ss_pred cCCCceEEEEEECCCeEE
Q 002318 178 LSNGTRYYVMAVTPTRLY 195 (936)
Q Consensus 178 ~~~~~~~~i~ast~~rly 195 (936)
+.++++.+++..++.
T Consensus 365 ---Dgk~vl~v~~d~~i~ 379 (519)
T KOG0293|consen 365 ---DGKYVLLVTVDKKIR 379 (519)
T ss_pred ---CCcEEEEEeccccee
Confidence 235677767765554
No 169
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=82.89 E-value=42 Score=38.39 Aligned_cols=118 Identities=9% Similarity=0.104 Sum_probs=76.6
Q ss_pred ccceeEEEeCCCCCeEEEEeecCCCccEEEEecCCCCceeccCCCC--ceEEEEEecCCCC--CCCCcceEEEE-cCCCc
Q 002318 65 EQSIHKVFVDPGGSHCIATIVGSGGAETFYTHAKWSKPRVLSKLKG--LVVNAVAWNRQQI--TEASTKEIILG-TDTGQ 139 (936)
Q Consensus 65 ~~~i~~i~lDp~G~hlli~~~~~~~g~~~Y~~~~~~k~k~L~klkg--~~I~sVaw~~~~~--~~~st~~iLiG-t~~G~ 139 (936)
..+|.-|--||+|.-|+.|++ ||..=-++.... .....|.+ ..|-++-|.|... +....+.+|+- ..++.
T Consensus 359 ~g~V~alk~n~tg~LLaS~Sd---D~TlkiWs~~~~--~~~~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dst 433 (524)
T KOG0273|consen 359 HGEVNALKWNPTGSLLASCSD---DGTLKIWSMGQS--NSVHDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDST 433 (524)
T ss_pred cCceEEEEECCCCceEEEecC---CCeeEeeecCCC--cchhhhhhhccceeeEeecCCCCccCCCcCCceEEEeecCCe
Confidence 468999999999999999999 898888874322 12223333 3688888885432 22234444444 56676
Q ss_pred EEEEEEecCCcccceeeEEeeeCCCCCceeeEEEEeeccCCCceEEEEEECCCeEEEEec
Q 002318 140 LHEMAVDEKDKREKYIKLLFELNELPEAFMGLQMETASLSNGTRYYVMAVTPTRLYSFTG 199 (936)
Q Consensus 140 i~e~~i~~~~~~~~~~k~v~~l~~~~~~I~gi~~~~~~~~~~~~~~i~ast~~rly~f~~ 199 (936)
+--..+... .+++.+..-.+||..+.+. ++.++++--+++.++.-|..
T Consensus 434 V~lwdv~~g-------v~i~~f~kH~~pVysvafS-----~~g~ylAsGs~dg~V~iws~ 481 (524)
T KOG0273|consen 434 VKLWDVESG-------VPIHTLMKHQEPVYSVAFS-----PNGRYLASGSLDGCVHIWST 481 (524)
T ss_pred EEEEEccCC-------ceeEeeccCCCceEEEEec-----CCCcEEEecCCCCeeEeccc
Confidence 666655543 4455564434789999987 33467777677777777754
No 170
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=82.66 E-value=47 Score=35.30 Aligned_cols=136 Identities=13% Similarity=0.164 Sum_probs=78.7
Q ss_pred EeCCEEEEEecCCeEEEEeC-CCCCceeeEcCCCCCCccceeEEEeCCCCCeEEEEeecCCCccEEEEecCCCCceeccC
Q 002318 29 AGNDVIVLGTSKGWLIRHDF-GAGDSYDIDLSAGRPGEQSIHKVFVDPGGSHCIATIVGSGGAETFYTHAKWSKPRVLSK 107 (936)
Q Consensus 29 v~~n~l~l~~~~g~l~ridl-~~~~~~~~~l~~~~~~~~~i~~i~lDp~G~hlli~~~~~~~g~~~Y~~~~~~k~k~L~k 107 (936)
-+++.++.+....++.+||. ....+.++... .+-|...| .|.|.|+++... +-..-.+.....|+..--+
T Consensus 75 ~~~d~~atas~dk~ir~wd~r~~k~~~~i~~~-----~eni~i~w-sp~g~~~~~~~k---dD~it~id~r~~~~~~~~~ 145 (313)
T KOG1407|consen 75 KHPDLFATASGDKTIRIWDIRSGKCTARIETK-----GENINITW-SPDGEYIAVGNK---DDRITFIDARTYKIVNEEQ 145 (313)
T ss_pred CCCcceEEecCCceEEEEEeccCcEEEEeecc-----CcceEEEE-cCCCCEEEEecC---cccEEEEEecccceeehhc
Confidence 35677788888888999999 55555555443 24444444 588999999877 5555566655554433333
Q ss_pred CCCceEEEEEecCCCCCCCCcceEEEEcCCCcEEEEEEecCCcccceeeEEeeeCCCCCceeeEEEEeeccCCCceEEEE
Q 002318 108 LKGLVVNAVAWNRQQITEASTKEIILGTDTGQLHEMAVDEKDKREKYIKLLFELNELPEAFMGLQMETASLSNGTRYYVM 187 (936)
Q Consensus 108 lkg~~I~sVaw~~~~~~~~st~~iLiGt~~G~i~e~~i~~~~~~~~~~k~v~~l~~~~~~I~gi~~~~~~~~~~~~~~i~ 187 (936)
..+.+.-++|+.++ .-|.+-+-.|.|-.... ..+|.|+.+.- +|...|.+..-|. .+++.+
T Consensus 146 -~~~e~ne~~w~~~n------d~Fflt~GlG~v~ILsy-------psLkpv~si~A--H~snCicI~f~p~---GryfA~ 206 (313)
T KOG1407|consen 146 -FKFEVNEISWNNSN------DLFFLTNGLGCVEILSY-------PSLKPVQSIKA--HPSNCICIEFDPD---GRYFAT 206 (313)
T ss_pred -ccceeeeeeecCCC------CEEEEecCCceEEEEec-------ccccccccccc--CCcceEEEEECCC---CceEee
Confidence 34678888998321 13444444475443322 13666666652 5565555554332 245555
Q ss_pred EECCC
Q 002318 188 AVTPT 192 (936)
Q Consensus 188 ast~~ 192 (936)
.+...
T Consensus 207 GsADA 211 (313)
T KOG1407|consen 207 GSADA 211 (313)
T ss_pred ccccc
Confidence 44433
No 171
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=82.61 E-value=8.6 Score=43.71 Aligned_cols=55 Identities=13% Similarity=0.138 Sum_probs=41.7
Q ss_pred CCEEEEEecCCeEEEEeC-CCCCceeeEcCCCCCCccceeEEEeCCCCCeEEEEeecCCCccEE
Q 002318 31 NDVIVLGTSKGWLIRHDF-GAGDSYDIDLSAGRPGEQSIHKVFVDPGGSHCIATIVGSGGAETF 93 (936)
Q Consensus 31 ~n~l~l~~~~g~l~ridl-~~~~~~~~~l~~~~~~~~~i~~i~lDp~G~hlli~~~~~~~g~~~ 93 (936)
.|+++.|+.+|+|..||. .++-+++++=+. +.|..|-.=|.|...+.+++ ++..-
T Consensus 312 ~n~fl~G~sd~ki~~wDiRs~kvvqeYd~hL-----g~i~~i~F~~~g~rFissSD---dks~r 367 (503)
T KOG0282|consen 312 QNIFLVGGSDKKIRQWDIRSGKVVQEYDRHL-----GAILDITFVDEGRRFISSSD---DKSVR 367 (503)
T ss_pred CcEEEEecCCCcEEEEeccchHHHHHHHhhh-----hheeeeEEccCCceEeeecc---CccEE
Confidence 389999999999999999 777778887663 45666666677887777777 55443
No 172
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=82.60 E-value=63 Score=33.34 Aligned_cols=116 Identities=12% Similarity=0.139 Sum_probs=72.8
Q ss_pred CceeEEEEeCCEEEE-EecCCeEEEEeC-CCCCceeeEcCCC--CCCccceeEEEeCCCCCeEEEEeecCCCccEEEEec
Q 002318 22 GVITCMSAGNDVIVL-GTSKGWLIRHDF-GAGDSYDIDLSAG--RPGEQSIHKVFVDPGGSHCIATIVGSGGAETFYTHA 97 (936)
Q Consensus 22 ~~i~~l~v~~n~l~l-~~~~g~l~ridl-~~~~~~~~~l~~~--~~~~~~i~~i~lDp~G~hlli~~~~~~~g~~~Y~~~ 97 (936)
+.|.++--=|+.|+. |....+|--||| -|..|..++-... ....+.|..+.+||+|+.+..-- +++....|--+
T Consensus 184 ghilalyswn~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav~vdpsgrll~sg~--~dssc~lydir 261 (350)
T KOG0641|consen 184 GHILALYSWNGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAVDPSGRLLASGH--ADSSCMLYDIR 261 (350)
T ss_pred ccEEEEEEecCcEEEccCCCceEEEEeeeccceeeeccCcccCCCcccceeEEEEECCCcceeeecc--CCCceEEEEee
Confidence 567777777777754 556666777799 7776665443322 22247899999999998444322 22334445443
Q ss_pred CCCCceeccCC--CCceEEEEEecCCCCCCCCcceEEEEcCCCcEEEEEEecC
Q 002318 98 KWSKPRVLSKL--KGLVVNAVAWNRQQITEASTKEIILGTDTGQLHEMAVDEK 148 (936)
Q Consensus 98 ~~~k~k~L~kl--kg~~I~sVaw~~~~~~~~st~~iLiGt~~G~i~e~~i~~~ 148 (936)
.. |.+.++ ..-+|+||-|.|.. --+|.|+-+-.|-.+.+.+.
T Consensus 262 g~---r~iq~f~phsadir~vrfsp~a------~yllt~syd~~ikltdlqgd 305 (350)
T KOG0641|consen 262 GG---RMIQRFHPHSADIRCVRFSPGA------HYLLTCSYDMKIKLTDLQGD 305 (350)
T ss_pred CC---ceeeeeCCCccceeEEEeCCCc------eEEEEecccceEEEeecccc
Confidence 33 223332 23589999999643 36777877887877777653
No 173
>KOG2930 consensus SCF ubiquitin ligase, Rbx1 component [Posttranslational modification, protein turnover, chaperones]
Probab=82.38 E-value=1.4 Score=39.16 Aligned_cols=50 Identities=20% Similarity=0.488 Sum_probs=30.2
Q ss_pred cccccccchhhhhcccccccccccCCCCCCCCEEEEc-CCChhHHHhHHHHHhh
Q 002318 833 DEDCGVCRRKILVAGRDYRMARGYASVGPMAPFYVFP-CGHAFHAQCLIAHVTQ 885 (936)
Q Consensus 833 ~~~C~~C~k~L~~~~~~~~~~~~~~~~~~~~~fvvFp-CgH~fH~~CL~~~~~~ 885 (936)
-+.|++|.--|....+.=++.++. ....-.|+.. |.|+||..|..+.+..
T Consensus 46 vDnCAICRnHIMd~CieCQa~~~~---~~~EC~VaWG~CNHaFH~hCisrWlkt 96 (114)
T KOG2930|consen 46 VDNCAICRNHIMDLCIECQANQSA---TSEECTVAWGVCNHAFHFHCISRWLKT 96 (114)
T ss_pred echhHHHHHHHHHHHHhhccCCCC---CCCceEEEeeecchHHHHHHHHHHHhh
Confidence 468999998887643310111111 1111345554 9999999999887643
No 174
>PRK04922 tolB translocation protein TolB; Provisional
Probab=82.29 E-value=52 Score=38.29 Aligned_cols=114 Identities=15% Similarity=0.176 Sum_probs=64.7
Q ss_pred CceeEEEEe--CCEEEEEe-c--CCeEEEEeCCCCCceeeEcCCCCCCccceeEEEeCCCCCeEEEEeecCCCccEEEEe
Q 002318 22 GVITCMSAG--NDVIVLGT-S--KGWLIRHDFGAGDSYDIDLSAGRPGEQSIHKVFVDPGGSHCIATIVGSGGAETFYTH 96 (936)
Q Consensus 22 ~~i~~l~v~--~n~l~l~~-~--~g~l~ridl~~~~~~~~~l~~~~~~~~~i~~i~lDp~G~hlli~~~~~~~g~~~Y~~ 96 (936)
+.+.+.+.+ ++.++.+. . ...|+++|+...+...+.-. .+.....-.+|.|.++++.....++.+.|.++
T Consensus 204 ~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~l~~~-----~g~~~~~~~SpDG~~l~~~~s~~g~~~Iy~~d 278 (433)
T PRK04922 204 EPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQRELVASF-----RGINGAPSFSPDGRRLALTLSRDGNPEIYVMD 278 (433)
T ss_pred CccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEEeccC-----CCCccCceECCCCCEEEEEEeCCCCceEEEEE
Confidence 345555655 34454443 2 34699999933332222111 12233566789999988775532334677777
Q ss_pred cCCCCceeccCCCCceEEEEEecCCCCCCCCcceEEEEcC-CC--cEEEEEEec
Q 002318 97 AKWSKPRVLSKLKGLVVNAVAWNRQQITEASTKEIILGTD-TG--QLHEMAVDE 147 (936)
Q Consensus 97 ~~~~k~k~L~klkg~~I~sVaw~~~~~~~~st~~iLiGt~-~G--~i~e~~i~~ 147 (936)
....+.+.+....+ ...+++|.++ .+.++.++. .| .||...+..
T Consensus 279 ~~~g~~~~lt~~~~-~~~~~~~spD------G~~l~f~sd~~g~~~iy~~dl~~ 325 (433)
T PRK04922 279 LGSRQLTRLTNHFG-IDTEPTWAPD------GKSIYFTSDRGGRPQIYRVAASG 325 (433)
T ss_pred CCCCCeEECccCCC-CccceEECCC------CCEEEEEECCCCCceEEEEECCC
Confidence 76667777765333 4567899842 235666554 34 477766544
No 175
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=82.26 E-value=44 Score=35.72 Aligned_cols=107 Identities=10% Similarity=0.102 Sum_probs=63.5
Q ss_pred eeEEEEe--CCEEEEEe-cCCeEEEEeC-CCCCceeeEcCCCCCCccceeEEEeCCCCCeEEEEeecCCCcc-EEEEecC
Q 002318 24 ITCMSAG--NDVIVLGT-SKGWLIRHDF-GAGDSYDIDLSAGRPGEQSIHKVFVDPGGSHCIATIVGSGGAE-TFYTHAK 98 (936)
Q Consensus 24 i~~l~v~--~n~l~l~~-~~g~l~ridl-~~~~~~~~~l~~~~~~~~~i~~i~lDp~G~hlli~~~~~~~g~-~~Y~~~~ 98 (936)
..+++++ ++.++++. .+|.|..+|+ ....+..++.+ ..+..+.++|.|..++++.. ++. .+++...
T Consensus 75 ~~~~~~~~~g~~l~~~~~~~~~l~~~d~~~~~~~~~~~~~------~~~~~~~~~~dg~~l~~~~~---~~~~~~~~d~~ 145 (300)
T TIGR03866 75 PELFALHPNGKILYIANEDDNLVTVIDIETRKVLAEIPVG------VEPEGMAVSPDGKIVVNTSE---TTNMAHFIDTK 145 (300)
T ss_pred ccEEEECCCCCEEEEEcCCCCeEEEEECCCCeEEeEeeCC------CCcceEEECCCCCEEEEEec---CCCeEEEEeCC
Confidence 3556665 34676654 4689999999 44334444322 23577889999998888776 443 3444543
Q ss_pred CCCc-eeccCCCCceEEEEEecCCCCCCCCcceEEEEc-CCCcEEEEEEec
Q 002318 99 WSKP-RVLSKLKGLVVNAVAWNRQQITEASTKEIILGT-DTGQLHEMAVDE 147 (936)
Q Consensus 99 ~~k~-k~L~klkg~~I~sVaw~~~~~~~~st~~iLiGt-~~G~i~e~~i~~ 147 (936)
..+. ..+. .+....+++|++. .+.+++++ .+|.|+...+..
T Consensus 146 ~~~~~~~~~--~~~~~~~~~~s~d------g~~l~~~~~~~~~v~i~d~~~ 188 (300)
T TIGR03866 146 TYEIVDNVL--VDQRPRFAEFTAD------GKELWVSSEIGGTVSVIDVAT 188 (300)
T ss_pred CCeEEEEEE--cCCCccEEEECCC------CCEEEEEcCCCCEEEEEEcCc
Confidence 3322 1121 2345678899842 22455565 478888776654
No 176
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=82.08 E-value=88 Score=34.66 Aligned_cols=161 Identities=12% Similarity=0.108 Sum_probs=88.1
Q ss_pred CCceeEEEEeCCEEEEEecCCeEEEEeC-CCCCceee-EcCCCCCCccceeEEEeCCCCCeEEEEeecCCCccEEE-Eec
Q 002318 21 RGVITCMSAGNDVIVLGTSKGWLIRHDF-GAGDSYDI-DLSAGRPGEQSIHKVFVDPGGSHCIATIVGSGGAETFY-THA 97 (936)
Q Consensus 21 ~~~i~~l~v~~n~l~l~~~~g~l~ridl-~~~~~~~~-~l~~~~~~~~~i~~i~lDp~G~hlli~~~~~~~g~~~Y-~~~ 97 (936)
++++++++.-++.+++|.. +.|+.+++ ..+..... ..+. ...+..+.. .|..+++..-- .|-.+| +..
T Consensus 88 ~g~V~ai~~~~~~lv~~~g-~~l~v~~l~~~~~l~~~~~~~~----~~~i~sl~~--~~~~I~vgD~~--~sv~~~~~~~ 158 (321)
T PF03178_consen 88 KGPVTAICSFNGRLVVAVG-NKLYVYDLDNSKTLLKKAFYDS----PFYITSLSV--FKNYILVGDAM--KSVSLLRYDE 158 (321)
T ss_dssp SS-EEEEEEETTEEEEEET-TEEEEEEEETTSSEEEEEEE-B----SSSEEEEEE--ETTEEEEEESS--SSEEEEEEET
T ss_pred cCcceEhhhhCCEEEEeec-CEEEEEEccCcccchhhheecc----eEEEEEEec--cccEEEEEEcc--cCEEEEEEEc
Confidence 4679999999999777765 59999999 44423322 2221 124444444 46666665431 233333 233
Q ss_pred CCCCceeccC-CCCceEEEEEecCCCCCCCCcceEEEEcCCCcEEEEEEecCC---cccc-eeeEE--eeeCCCCCceee
Q 002318 98 KWSKPRVLSK-LKGLVVNAVAWNRQQITEASTKEIILGTDTGQLHEMAVDEKD---KREK-YIKLL--FELNELPEAFMG 170 (936)
Q Consensus 98 ~~~k~k~L~k-lkg~~I~sVaw~~~~~~~~st~~iLiGt~~G~i~e~~i~~~~---~~~~-~~k~v--~~l~~~~~~I~g 170 (936)
...+...+.+ .....++++++-.+ . . .+++|+..|.|+-...++.. ...+ .+..+ |.++ ..|+.
T Consensus 159 ~~~~l~~va~d~~~~~v~~~~~l~d----~-~-~~i~~D~~gnl~~l~~~~~~~~~~~~~~~L~~~~~f~lg---~~v~~ 229 (321)
T PF03178_consen 159 ENNKLILVARDYQPRWVTAAEFLVD----E-D-TIIVGDKDGNLFVLRYNPEIPNSRDGDPKLERISSFHLG---DIVNS 229 (321)
T ss_dssp TTE-EEEEEEESS-BEEEEEEEE-S----S-S-EEEEEETTSEEEEEEE-SS-SSTTTTTTBEEEEEEEE-S---S-EEE
T ss_pred cCCEEEEEEecCCCccEEEEEEecC----C-c-EEEEEcCCCeEEEEEECCCCcccccccccceeEEEEECC---Cccce
Confidence 3344555554 23467899988721 1 2 89999999999988887531 1122 33333 5566 45888
Q ss_pred EEEEee-cc--CCC---ceEEEEEECCCeEEEEec
Q 002318 171 LQMETA-SL--SNG---TRYYVMAVTPTRLYSFTG 199 (936)
Q Consensus 171 i~~~~~-~~--~~~---~~~~i~ast~~rly~f~~ 199 (936)
+.-... |. +.+ ...++++|....++.+..
T Consensus 230 ~~~~~l~~~~~~~~~~~~~~i~~~T~~G~Ig~l~p 264 (321)
T PF03178_consen 230 FRRGSLIPRSGSSESPNRPQILYGTVDGSIGVLIP 264 (321)
T ss_dssp EEE--SS--SSSS-TTEEEEEEEEETTS-EEEEEE
T ss_pred EEEEEeeecCCCCcccccceEEEEecCCEEEEEEe
Confidence 743322 21 111 246888888888887766
No 177
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=82.04 E-value=73 Score=37.10 Aligned_cols=115 Identities=16% Similarity=0.139 Sum_probs=59.4
Q ss_pred cCCCceeEEEEeCCEE-EEEecCCeEEEEeCCC-CCceeeEcCCCCCCccceeEEEeCCCCCeEEEEeecCCCccEE---
Q 002318 19 KGRGVITCMSAGNDVI-VLGTSKGWLIRHDFGA-GDSYDIDLSAGRPGEQSIHKVFVDPGGSHCIATIVGSGGAETF--- 93 (936)
Q Consensus 19 ~~~~~i~~l~v~~n~l-~l~~~~g~l~ridl~~-~~~~~~~l~~~~~~~~~i~~i~lDp~G~hlli~~~~~~~g~~~--- 93 (936)
+...+|-|++-.+|-- ++-+..|.++.=-|.| ..+.+-.-+ ++-|..+--.|+.. +|.+. |+-|
T Consensus 143 Q~~~~v~c~~W~p~S~~vl~c~g~h~~IKpL~~n~k~i~WkAH-----DGiiL~~~W~~~s~--lI~sg----GED~kfK 211 (737)
T KOG1524|consen 143 QNEESIRCARWAPNSNSIVFCQGGHISIKPLAANSKIIRWRAH-----DGLVLSLSWSTQSN--IIASG----GEDFRFK 211 (737)
T ss_pred hcCceeEEEEECCCCCceEEecCCeEEEeecccccceeEEecc-----CcEEEEeecCcccc--ceeec----CCceeEE
Confidence 3345688888765532 3334556666656633 334344444 45666665566554 33332 4433
Q ss_pred EEecCCCCceeccCCCCceEEEEEecCCCC-----------CCC------------CcceEEEEcCCCcEEEEEE
Q 002318 94 YTHAKWSKPRVLSKLKGLVVNAVAWNRQQI-----------TEA------------STKEIILGTDTGQLHEMAV 145 (936)
Q Consensus 94 Y~~~~~~k~k~L~klkg~~I~sVaw~~~~~-----------~~~------------st~~iLiGt~~G~i~e~~i 145 (936)
.+...- ++-.-+.-..+.|+|||||++.. .+. +.-.+-+||..|+++.+.+
T Consensus 212 vWD~~G-~~Lf~S~~~ey~ITSva~npd~~~~v~S~nt~R~~~p~~GSifnlsWS~DGTQ~a~gt~~G~v~~A~~ 285 (737)
T KOG1524|consen 212 IWDAQG-ANLFTSAAEEYAITSVAFNPEKDYLLWSYNTARFSSPRVGSIFNLSWSADGTQATCGTSTGQLIVAYA 285 (737)
T ss_pred eecccC-cccccCChhccceeeeeeccccceeeeeeeeeeecCCCccceEEEEEcCCCceeeccccCceEEEeee
Confidence 122211 11111222467889999986520 111 1225567888888887654
No 178
>KOG0828 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=81.62 E-value=0.54 Score=52.88 Aligned_cols=51 Identities=27% Similarity=0.595 Sum_probs=33.6
Q ss_pred eecccccccccchhhhhcccccccccc-cCC--CCCCCCEEEEcCCChhHHHhHHHHHh
Q 002318 829 VIDRDEDCGVCRRKILVAGRDYRMARG-YAS--VGPMAPFYVFPCGHAFHAQCLIAHVT 884 (936)
Q Consensus 829 ~i~~~~~C~~C~k~L~~~~~~~~~~~~-~~~--~~~~~~fvvFpCgH~fH~~CL~~~~~ 884 (936)
.+.....|.+|-.++.. +...+ +.. -.+.....+-||+|.||..||.+.+.
T Consensus 567 ~~~~t~dC~ICMt~I~l-----~~~~s~~~~~~~~~~~nYm~tPC~HifH~~CL~~WMd 620 (636)
T KOG0828|consen 567 FVRRTNDCVICMTPIDL-----RSTGSDCMVASMMVRRNYMLTPCHHIFHRQCLLQWMD 620 (636)
T ss_pred hhhccccceEeccccce-----eeccCcchhhhhhhhccccccchHHHHHHHHHHHHHh
Confidence 34556789999999877 31111 111 11223466669999999999999875
No 179
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=81.38 E-value=78 Score=33.69 Aligned_cols=109 Identities=12% Similarity=0.032 Sum_probs=66.4
Q ss_pred eEEEEeCCEEEEEecCCeEEEEeC-CCCCceeeEcCCCCCCccceeEEEeCCCCCeEEEEeecCCCccEEEEecCCCCce
Q 002318 25 TCMSAGNDVIVLGTSKGWLIRHDF-GAGDSYDIDLSAGRPGEQSIHKVFVDPGGSHCIATIVGSGGAETFYTHAKWSKPR 103 (936)
Q Consensus 25 ~~l~v~~n~l~l~~~~g~l~ridl-~~~~~~~~~l~~~~~~~~~i~~i~lDp~G~hlli~~~~~~~g~~~Y~~~~~~k~k 103 (936)
.+..|-+|++++|..+|.||-++. .+++...+.+.- ..+ -+--+|++|.-+-+.+. ||..|-+...+.+.-
T Consensus 57 ~sa~vvgdfVV~GCy~g~lYfl~~~tGs~~w~f~~~~----~vk-~~a~~d~~~glIycgsh---d~~~yalD~~~~~cV 128 (354)
T KOG4649|consen 57 CSAIVVGDFVVLGCYSGGLYFLCVKTGSQIWNFVILE----TVK-VRAQCDFDGGLIYCGSH---DGNFYALDPKTYGCV 128 (354)
T ss_pred eeeEEECCEEEEEEccCcEEEEEecchhheeeeeehh----hhc-cceEEcCCCceEEEecC---CCcEEEecccccceE
Confidence 344568899999999999999999 777877776651 122 34567999986666665 666554554443211
Q ss_pred eccCCCCceEEEEEecCCCCCCCCcceEEEEcCCCcEEEEEEec
Q 002318 104 VLSKLKGLVVNAVAWNRQQITEASTKEIILGTDTGQLHEMAVDE 147 (936)
Q Consensus 104 ~L~klkg~~I~sVaw~~~~~~~~st~~iLiGt~~G~i~e~~i~~ 147 (936)
-=+|--|-...+=+.++- .+++-..+..|.++-...++
T Consensus 129 ykskcgG~~f~sP~i~~g------~~sly~a~t~G~vlavt~~~ 166 (354)
T KOG4649|consen 129 YKSKCGGGTFVSPVIAPG------DGSLYAAITAGAVLAVTKNP 166 (354)
T ss_pred EecccCCceeccceecCC------CceEEEEeccceEEEEccCC
Confidence 112333434444444421 23566666777777666554
No 180
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=81.06 E-value=76 Score=33.25 Aligned_cols=87 Identities=10% Similarity=0.031 Sum_probs=49.0
Q ss_pred eEEEEeCCEEEEEecCCeEEEEeC-CCCCceeeEcCCCCCCccceeEEEeCCCCCeEEEEeecCCCccEEEEecCCCCce
Q 002318 25 TCMSAGNDVIVLGTSKGWLIRHDF-GAGDSYDIDLSAGRPGEQSIHKVFVDPGGSHCIATIVGSGGAETFYTHAKWSKPR 103 (936)
Q Consensus 25 ~~l~v~~n~l~l~~~~g~l~ridl-~~~~~~~~~l~~~~~~~~~i~~i~lDp~G~hlli~~~~~~~g~~~Y~~~~~~k~k 103 (936)
...-|-.|.-.-.-+..+|-.|+. .+.-+.++.-+ .-.|..+.+......+..|- |+-.++|+.-.+- |
T Consensus 23 vryN~dGnY~ltcGsdrtvrLWNp~rg~liktYsgh-----G~EVlD~~~s~Dnskf~s~G---gDk~v~vwDV~TG--k 92 (307)
T KOG0316|consen 23 VRYNVDGNYCLTCGSDRTVRLWNPLRGALIKTYSGH-----GHEVLDAALSSDNSKFASCG---GDKAVQVWDVNTG--K 92 (307)
T ss_pred EEEccCCCEEEEcCCCceEEeecccccceeeeecCC-----CceeeeccccccccccccCC---CCceEEEEEcccC--e
Confidence 333444454333334445666677 55555555433 23455555533333333332 3667788887664 5
Q ss_pred eccCCCCc--eEEEEEecCC
Q 002318 104 VLSKLKGL--VVNAVAWNRQ 121 (936)
Q Consensus 104 ~L~klkg~--~I~sVaw~~~ 121 (936)
.+.|++|+ .|..|+||+.
T Consensus 93 v~Rr~rgH~aqVNtV~fNee 112 (307)
T KOG0316|consen 93 VDRRFRGHLAQVNTVRFNEE 112 (307)
T ss_pred eeeecccccceeeEEEecCc
Confidence 67777876 7889999965
No 181
>PRK05137 tolB translocation protein TolB; Provisional
Probab=81.00 E-value=59 Score=37.88 Aligned_cols=155 Identities=10% Similarity=0.107 Sum_probs=86.7
Q ss_pred cCCCceeEEEEeCC--EEEEEe-c--CCeEEEEeCCCCCceeeEcCCCCCCccceeEEEeCCCCCeEEEEeecCCCccEE
Q 002318 19 KGRGVITCMSAGND--VIVLGT-S--KGWLIRHDFGAGDSYDIDLSAGRPGEQSIHKVFVDPGGSHCIATIVGSGGAETF 93 (936)
Q Consensus 19 ~~~~~i~~l~v~~n--~l~l~~-~--~g~l~ridl~~~~~~~~~l~~~~~~~~~i~~i~lDp~G~hlli~~~~~~~g~~~ 93 (936)
.+.+.+.+.+.+.+ .|+.+. . ++.|+++|+...+...+.-. .+.+......|.|.+++++++..++.+.|
T Consensus 199 ~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~~l~~~-----~g~~~~~~~SPDG~~la~~~~~~g~~~Iy 273 (435)
T PRK05137 199 DGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQRELVGNF-----PGMTFAPRFSPDGRKVVMSLSQGGNTDIY 273 (435)
T ss_pred cCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEEEeecC-----CCcccCcEECCCCCEEEEEEecCCCceEE
Confidence 34445777777654 454433 2 35799999933333322111 13445566789999998776533345677
Q ss_pred EEecCCCCceeccCCCCceEEEEEecCCCCCCCCcceEEEEcCC-C--cEEEEEEecCCcccceeeEEeeeCCCCCceee
Q 002318 94 YTHAKWSKPRVLSKLKGLVVNAVAWNRQQITEASTKEIILGTDT-G--QLHEMAVDEKDKREKYIKLLFELNELPEAFMG 170 (936)
Q Consensus 94 Y~~~~~~k~k~L~klkg~~I~sVaw~~~~~~~~st~~iLiGt~~-G--~i~e~~i~~~~~~~~~~k~v~~l~~~~~~I~g 170 (936)
.++....+.+.|....+ ...+.+|.++ .+.|+..+.. | .||...++.+ ..+.+..- ++.+..
T Consensus 274 ~~d~~~~~~~~Lt~~~~-~~~~~~~spD------G~~i~f~s~~~g~~~Iy~~d~~g~-----~~~~lt~~---~~~~~~ 338 (435)
T PRK05137 274 TMDLRSGTTTRLTDSPA-IDTSPSYSPD------GSQIVFESDRSGSPQLYVMNADGS-----NPRRISFG---GGRYST 338 (435)
T ss_pred EEECCCCceEEccCCCC-ccCceeEcCC------CCEEEEEECCCCCCeEEEEECCCC-----CeEEeecC---CCcccC
Confidence 77777777788876433 4667899843 2366666543 3 5777665432 13444321 133555
Q ss_pred EEEEeeccCCCceEEEEEECC---CeEEEEe
Q 002318 171 LQMETASLSNGTRYYVMAVTP---TRLYSFT 198 (936)
Q Consensus 171 i~~~~~~~~~~~~~~i~ast~---~rly~f~ 198 (936)
..|.. +.+.+++++.. .+++.+.
T Consensus 339 ~~~Sp-----dG~~ia~~~~~~~~~~i~~~d 364 (435)
T PRK05137 339 PVWSP-----RGDLIAFTKQGGGQFSIGVMK 364 (435)
T ss_pred eEECC-----CCCEEEEEEcCCCceEEEEEE
Confidence 66652 23566665532 3555443
No 182
>PF13838 Clathrin_H_link: Clathrin-H-link; PDB: 2XZG_A 3GD1_I 1BPO_C 1C9I_B 1C9L_A.
Probab=80.95 E-value=7.5 Score=32.25 Aligned_cols=54 Identities=24% Similarity=0.320 Sum_probs=38.7
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHhc-CCCChHHHHHHhcCc----ChHHHHHHHHH
Q 002318 391 DQVYLVQAEAAFATKDFHRAASFYAKIN-YILSFEEITLKFISV----SEQDALRTFLL 444 (936)
Q Consensus 391 ~~I~~~~~~~L~~~g~y~~Aa~~y~~~~-~~~~~E~v~lkFl~~----~~~~~L~~YL~ 444 (936)
+.....+-+.||+.|+|.+||++.+.+- +..--.+.+-||-.. ++...|..|..
T Consensus 6 d~l~~~~F~~l~~~g~y~eAA~~AA~sP~giLRt~~Ti~rFk~~p~~pGq~splL~YF~ 64 (66)
T PF13838_consen 6 DDLYVQQFNELFSQGQYEEAAKVAANSPRGILRTPETINRFKQVPAQPGQPSPLLQYFG 64 (66)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHSGGGTT-SHHHHHHHHTS---TTS--HHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHhCccchhcCHHHHHHHHcCCCCCCCCCHHHHHHh
Confidence 4567788899999999999999999873 334456788888754 56677877765
No 183
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=80.85 E-value=1.5e+02 Score=36.60 Aligned_cols=259 Identities=10% Similarity=0.036 Sum_probs=131.4
Q ss_pred HHchhhHHHHHHhcCC-----hhhHHHHHHHHHHHHHhcCCHHHHHHHHHHhcCC--C---ChHHHHHHhcCcChHHHHH
Q 002318 371 YLDMKEYAAALANCRD-----PLQRDQVYLVQAEAAFATKDFHRAASFYAKINYI--L---SFEEITLKFISVSEQDALR 440 (936)
Q Consensus 371 ll~~~~f~~Al~~~~~-----~~~~~~I~~~~~~~L~~~g~y~~Aa~~y~~~~~~--~---~~E~v~lkFl~~~~~~~L~ 440 (936)
.+..|++++|++..+. |. -.......|.-+...|++++|...|.+.... . .+.....-+...++.+.-.
T Consensus 86 ~l~~g~~~~A~~~l~~~l~~~P~-~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~P~~~~a~~~la~~l~~~g~~~eA~ 164 (656)
T PRK15174 86 PLASSQPDAVLQVVNKLLAVNVC-QPEDVLLVASVLLKSKQYATVADLAEQAWLAFSGNSQIFALHLRTLVLMDKELQAI 164 (656)
T ss_pred HhhcCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCChHHHH
Confidence 3568899999988753 32 2345667788899999999999999887511 1 1222222334455544433
Q ss_pred HHHHHHhhcccCchhHHHHHHHHHHHHHHHHHHhhhhcccchhhccchHHHHHHHHHHHHHHhcccccCCHH---HHHHH
Q 002318 441 TFLLRKLDNLAKDDKCQITMISTWATELYLDKINRLLLEDDTALENRSSEYQSIMREFRAFLSDCKDVLDEA---TTMKL 517 (936)
Q Consensus 441 ~YL~~~l~~l~~~~~~~~~lL~~Wl~ely~~~l~~~~~e~~~~~~~~~~~~~~~~~~l~~fl~~~~~~ld~~---tv~~l 517 (936)
..+...+...+.+... ..|+.. +. ..+ ++.+....++.++...... +.. .....
T Consensus 165 ~~~~~~~~~~P~~~~a-----~~~~~~-l~-~~g---------------~~~eA~~~~~~~l~~~~~~-~~~~~~~l~~~ 221 (656)
T PRK15174 165 SLARTQAQEVPPRGDM-----IATCLS-FL-NKS---------------RLPEDHDLARALLPFFALE-RQESAGLAVDT 221 (656)
T ss_pred HHHHHHHHhCCCCHHH-----HHHHHH-HH-HcC---------------CHHHHHHHHHHHHhcCCCc-chhHHHHHHHH
Confidence 3333322222222111 112111 11 111 1122233344444432100 111 12245
Q ss_pred HHHcCChhHHHHHHHhh--------hhHHHHHHHHHhcccHHH----HHHHHhCC----CCchhhHHhhHHHHHh-HChH
Q 002318 518 LESYGRVEELVFFASLK--------EQHEIVVHHYIQQGEAKK----ALQMLRKP----AVPIDLQYKFAPDLIM-LDAY 580 (936)
Q Consensus 518 l~~~g~~e~~l~~a~~~--------~dy~~ll~~yi~~~~~~~----AL~~L~~~----~d~~~li~k~~~~Ll~-~~p~ 580 (936)
+...|+.++++...... .-+..+...|...|++++ |+..+.+. ++.......++..++. ...+
T Consensus 222 l~~~g~~~eA~~~~~~al~~~p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~ 301 (656)
T PRK15174 222 LCAVGKYQEAIQTGESALARGLDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFNSDNVRIVTLYADALIRTGQNE 301 (656)
T ss_pred HHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHH
Confidence 56778888887666542 113345677888899886 67766542 3334566677777765 4666
Q ss_pred HHHHHHHccCCCCCCcc--hhHhhh-cCCCCCCCCChHHHHHHHHHHHhhcCCCCHhHHHHHHHHhhcCCChHHHHHHHH
Q 002318 581 ETVESWMTTNNLNPRKL--IPAMMR-YSSEPHAKNETHEVIKYLEFCVHRLHNEDPGVHNLLLSLYAKQEDDSALLRFLQ 657 (936)
Q Consensus 581 ~ti~ll~~~~~ld~~~l--i~~L~~-~~~~~~~~~~~~~~~~YLe~li~~~~~~~~~~hn~ll~Ly~~~~~~~~Ll~fL~ 657 (936)
+++..+-+.-.++|..- ...+.. +.. ......++..++.++...+. ....+..+..+|...++.++-+..++
T Consensus 302 eA~~~l~~al~l~P~~~~a~~~La~~l~~----~G~~~eA~~~l~~al~~~P~-~~~~~~~~a~al~~~G~~deA~~~l~ 376 (656)
T PRK15174 302 KAIPLLQQSLATHPDLPYVRAMYARALRQ----VGQYTAASDEFVQLAREKGV-TSKWNRYAAAALLQAGKTSEAESVFE 376 (656)
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHH----CCCHHHHHHHHHHHHHhCcc-chHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 77776654334455431 111100 000 12345677777877765543 23344444445555444455555554
Q ss_pred H
Q 002318 658 C 658 (936)
Q Consensus 658 ~ 658 (936)
.
T Consensus 377 ~ 377 (656)
T PRK15174 377 H 377 (656)
T ss_pred H
Confidence 4
No 184
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=80.84 E-value=27 Score=39.64 Aligned_cols=138 Identities=12% Similarity=0.076 Sum_probs=75.5
Q ss_pred eEEEEeCCEEEEEecCCeEEEEeC-CCCCceeeEcCCCCCCccceeEEEeCCCCCeEEEEeecCCCccEEEEecCCCCce
Q 002318 25 TCMSAGNDVIVLGTSKGWLIRHDF-GAGDSYDIDLSAGRPGEQSIHKVFVDPGGSHCIATIVGSGGAETFYTHAKWSKPR 103 (936)
Q Consensus 25 ~~l~v~~n~l~l~~~~g~l~ridl-~~~~~~~~~l~~~~~~~~~i~~i~lDp~G~hlli~~~~~~~g~~~Y~~~~~~k~k 103 (936)
.+..+.++.++++..+|.++.+|. .++.+-+.+.+.. ...-+ .|.++++++. +|..+.++...-+..
T Consensus 235 ~~p~~~~~~vy~~~~~g~l~a~d~~tG~~~W~~~~~~~-------~~p~~--~~~~vyv~~~---~G~l~~~d~~tG~~~ 302 (377)
T TIGR03300 235 GDPVVDGGQVYAVSYQGRVAALDLRSGRVLWKRDASSY-------QGPAV--DDNRLYVTDA---DGVVVALDRRSGSEL 302 (377)
T ss_pred CccEEECCEEEEEEcCCEEEEEECCCCcEEEeeccCCc-------cCceE--eCCEEEEECC---CCeEEEEECCCCcEE
Confidence 345678999999999999999999 6655444433211 01111 3667888776 788877765433211
Q ss_pred -eccCCCCceEEEEEecCCCCCCCCcceEEEEcCCCcEEEEEEecCCcccceeeEEe--eeCCCCCceeeEEEEeeccCC
Q 002318 104 -VLSKLKGLVVNAVAWNRQQITEASTKEIILGTDTGQLHEMAVDEKDKREKYIKLLF--ELNELPEAFMGLQMETASLSN 180 (936)
Q Consensus 104 -~L~klkg~~I~sVaw~~~~~~~~st~~iLiGt~~G~i~e~~i~~~~~~~~~~k~v~--~l~~~~~~I~gi~~~~~~~~~ 180 (936)
...++.+....+.+. ..+.+++|+.+|.||......+ +.+. .+++ +++.+--.. . +
T Consensus 303 W~~~~~~~~~~ssp~i--------~g~~l~~~~~~G~l~~~d~~tG-------~~~~~~~~~~--~~~~~sp~~---~-~ 361 (377)
T TIGR03300 303 WKNDELKYRQLTAPAV--------VGGYLVVGDFEGYLHWLSREDG-------SFVARLKTDG--SGIASPPVV---V-G 361 (377)
T ss_pred EccccccCCccccCEE--------ECCEEEEEeCCCEEEEEECCCC-------CEEEEEEcCC--CccccCCEE---E-C
Confidence 011112221122111 1247888999999887655432 1222 3332 122111111 1 2
Q ss_pred CceEEEEEECCCeEEEE
Q 002318 181 GTRYYVMAVTPTRLYSF 197 (936)
Q Consensus 181 ~~~~~i~ast~~rly~f 197 (936)
+.+++++....||.|
T Consensus 362 --~~l~v~~~dG~l~~~ 376 (377)
T TIGR03300 362 --DGLLVQTRDGDLYAF 376 (377)
T ss_pred --CEEEEEeCCceEEEe
Confidence 346777888889876
No 185
>PF08309 LVIVD: LVIVD repeat; InterPro: IPR013211 This repeat is found in bacterial and archaeal cell surface proteins, many of which are hypothetical. The secondary structure corresponding to this repeat is predicted to comprise 4 beta-strands, which may associate to form a beta-propeller. The repeat copy number varies from 2-14. This repeat is sometimes found with the PKD domain IPR000601 from INTERPRO.
Probab=80.78 E-value=6 Score=29.69 Aligned_cols=33 Identities=9% Similarity=0.135 Sum_probs=29.3
Q ss_pred CceeEEEEeCCEEEEEecCCeEEEEeC-CCCCce
Q 002318 22 GVITCMSAGNDVIVLGTSKGWLIRHDF-GAGDSY 54 (936)
Q Consensus 22 ~~i~~l~v~~n~l~l~~~~g~l~ridl-~~~~~~ 54 (936)
+.+..++|.+|..|++..++-|..+|+ +|....
T Consensus 2 G~a~~v~v~g~yaYva~~~~Gl~IvDISnPs~P~ 35 (42)
T PF08309_consen 2 GDARDVAVSGNYAYVADGNNGLVIVDISNPSNPV 35 (42)
T ss_pred ceEEEEEEECCEEEEEeCCCCEEEEECCCCCCCE
Confidence 457899999999999998888999999 988765
No 186
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=80.76 E-value=26 Score=41.55 Aligned_cols=117 Identities=14% Similarity=0.141 Sum_probs=69.5
Q ss_pred ccceeEEEeCCCCCeEEEEeecCCCccEEEEecCCCCceeccCCCC-ceEEEEEecCCCCCCCCcceEEEEcCCCcEEEE
Q 002318 65 EQSIHKVFVDPGGSHCIATIVGSGGAETFYTHAKWSKPRVLSKLKG-LVVNAVAWNRQQITEASTKEIILGTDTGQLHEM 143 (936)
Q Consensus 65 ~~~i~~i~lDp~G~hlli~~~~~~~g~~~Y~~~~~~k~k~L~klkg-~~I~sVaw~~~~~~~~st~~iLiGt~~G~i~e~ 143 (936)
.+.|..+.+.|-.+|++.|+-+ +.. .+ ++..|.+.|.|- ..|-+.+|++ +..-+.+|-.+|.|-..
T Consensus 93 ~D~IQCMsFNP~~h~LasCsLs--dFg--lW---S~~qK~V~K~kss~R~~~CsWtn------DGqylalG~~nGTIsiR 159 (1081)
T KOG1538|consen 93 NDAIQCMSFNPITHQLASCSLS--DFG--LW---SPEQKSVSKHKSSSRIICCSWTN------DGQYLALGMFNGTISIR 159 (1081)
T ss_pred CCeeeEeecCchHHHhhhcchh--hcc--cc---ChhhhhHHhhhhheeEEEeeecC------CCcEEEEeccCceEEee
Confidence 3688889999999999999871 111 22 122244554443 4688889983 23477889999977655
Q ss_pred EEecCCcccceeeEEeeeCCC-CCceeeEEEEeeccCCCceEEEEEEC--CCeEEEEecC
Q 002318 144 AVDEKDKREKYIKLLFELNEL-PEAFMGLQMETASLSNGTRYYVMAVT--PTRLYSFTGF 200 (936)
Q Consensus 144 ~i~~~~~~~~~~k~v~~l~~~-~~~I~gi~~~~~~~~~~~~~~i~ast--~~rly~f~~~ 200 (936)
+-. .|. |...+=|++ .+||-||.|....+.|....+.++-= .-..|+.+|+
T Consensus 160 Nk~----gEe--k~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~LsG~ 213 (1081)
T KOG1538|consen 160 NKN----GEE--KVKIERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQLSGK 213 (1081)
T ss_pred cCC----CCc--ceEEeCCCCCCCCceEEEecCCCCCCccceEEEEeccceeEEEEecce
Confidence 221 122 222355442 37899999986554343334444322 3356666664
No 187
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=80.32 E-value=38 Score=40.98 Aligned_cols=105 Identities=11% Similarity=0.091 Sum_probs=76.0
Q ss_pred ceeEEEEeCCEEEEEe--cCCeEEEEeC-CCCCceeeEcCCCCCCccceeEEEeCCCCCeEEEEeecCCCccEEEEecCC
Q 002318 23 VITCMSAGNDVIVLGT--SKGWLIRHDF-GAGDSYDIDLSAGRPGEQSIHKVFVDPGGSHCIATIVGSGGAETFYTHAKW 99 (936)
Q Consensus 23 ~i~~l~v~~n~l~l~~--~~g~l~ridl-~~~~~~~~~l~~~~~~~~~i~~i~lDp~G~hlli~~~~~~~g~~~Y~~~~~ 99 (936)
-+.|++++.|-=|++| .+.++-.||. .+..|.-+-=| .++|+-+-+.|.|.+|..... +|-.-||...+
T Consensus 537 DV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~~VRiF~GH-----~~~V~al~~Sp~Gr~LaSg~e---d~~I~iWDl~~ 608 (707)
T KOG0263|consen 537 DVDCVSFHPNSNYVATGSSDRTVRLWDVSTGNSVRIFTGH-----KGPVTALAFSPCGRYLASGDE---DGLIKIWDLAN 608 (707)
T ss_pred ccceEEECCcccccccCCCCceEEEEEcCCCcEEEEecCC-----CCceEEEEEcCCCceEeeccc---CCcEEEEEcCC
Confidence 4789999999777776 4567888999 77766666444 578999999999999998887 89999998766
Q ss_pred CCceeccCCCCc--eEEEEEecCCCCCCCCcceEEEEcCCCcEEEE
Q 002318 100 SKPRVLSKLKGL--VVNAVAWNRQQITEASTKEIILGTDTGQLHEM 143 (936)
Q Consensus 100 ~k~k~L~klkg~--~I~sVaw~~~~~~~~st~~iLiGt~~G~i~e~ 143 (936)
.+ .+..++|+ .|.|+.|..+. +-++.|..+..|-.-
T Consensus 609 ~~--~v~~l~~Ht~ti~SlsFS~dg------~vLasgg~DnsV~lW 646 (707)
T KOG0263|consen 609 GS--LVKQLKGHTGTIYSLSFSRDG------NVLASGGADNSVRLW 646 (707)
T ss_pred Cc--chhhhhcccCceeEEEEecCC------CEEEecCCCCeEEEE
Confidence 42 34444554 78899997431 245556666555433
No 188
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=79.81 E-value=2.1 Score=35.77 Aligned_cols=49 Identities=18% Similarity=0.319 Sum_probs=40.8
Q ss_pred HHHchhhHHHHHHhcCCh----hhHHHHHHHHHHHHHhcCCHHHHHHHHHHhc
Q 002318 370 VYLDMKEYAAALANCRDP----LQRDQVYLVQAEAAFATKDFHRAASFYAKIN 418 (936)
Q Consensus 370 ~ll~~~~f~~Al~~~~~~----~~~~~I~~~~~~~L~~~g~y~~Aa~~y~~~~ 418 (936)
+|+..++|++|++.++.- ..-......+|.-++..|+|.+|.+.+.+..
T Consensus 4 ~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l 56 (73)
T PF13371_consen 4 IYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERAL 56 (73)
T ss_pred HHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHH
Confidence 589999999999998642 2345677789999999999999999998875
No 189
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=79.37 E-value=3.4 Score=40.11 Aligned_cols=58 Identities=19% Similarity=0.226 Sum_probs=33.3
Q ss_pred HHHHchhhHHHHHHhcC-------ChhhHHHHHHHHHHHHHhcCCHHHHHHHHHHhcCCCChHHHH
Q 002318 369 KVYLDMKEYAAALANCR-------DPLQRDQVYLVQAEAAFATKDFHRAASFYAKINYILSFEEIT 427 (936)
Q Consensus 369 ~~ll~~~~f~~Al~~~~-------~~~~~~~I~~~~~~~L~~~g~y~~Aa~~y~~~~~~~~~E~v~ 427 (936)
+.+++.|+|++|.+..+ ++.-+.....+.|.-++..|+|++|...+.... ..+|...+
T Consensus 56 ~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d~Al~~L~~~~-~~~~~~~~ 120 (145)
T PF09976_consen 56 KAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYDEALATLQQIP-DEAFKALA 120 (145)
T ss_pred HHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhcc-CcchHHHH
Confidence 34666677777766643 123345555666677777777777777665542 23454443
No 190
>PF09943 DUF2175: Uncharacterized protein conserved in archaea (DUF2175); InterPro: IPR018686 This family of various hypothetical archaeal proteins has no known function.
Probab=79.36 E-value=2 Score=38.50 Aligned_cols=37 Identities=16% Similarity=0.440 Sum_probs=30.5
Q ss_pred cccccchhhhhcccccccccccCCCCCCCCEEEEcCCChhHHHhHHHHHhhcCC
Q 002318 835 DCGVCRRKILVAGRDYRMARGYASVGPMAPFYVFPCGHAFHAQCLIAHVTQCTN 888 (936)
Q Consensus 835 ~C~~C~k~L~~~~~~~~~~~~~~~~~~~~~fvvFpCgH~fH~~CL~~~~~~~~~ 888 (936)
+|.+||+++.. . ..+-|.-+=..|..|+.....+-..
T Consensus 4 kC~iCg~~I~~-----g------------qlFTF~~kG~VH~~C~~~~~~~k~~ 40 (101)
T PF09943_consen 4 KCYICGKPIYE-----G------------QLFTFTKKGPVHYECFREKASKKLY 40 (101)
T ss_pred EEEecCCeeee-----c------------ceEEEecCCcEeHHHHHHHHhhhcc
Confidence 79999999887 4 6778888889999999988765443
No 191
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=79.23 E-value=29 Score=38.09 Aligned_cols=143 Identities=10% Similarity=0.038 Sum_probs=81.8
Q ss_pred CEEEEEecCCeEEEEeC-CCCCceeeEcCCCCCCccceeEEE-eCC-CCCeEEEEeecCCCccEEEEecCCCCceeccCC
Q 002318 32 DVIVLGTSKGWLIRHDF-GAGDSYDIDLSAGRPGEQSIHKVF-VDP-GGSHCIATIVGSGGAETFYTHAKWSKPRVLSKL 108 (936)
Q Consensus 32 n~l~l~~~~g~l~ridl-~~~~~~~~~l~~~~~~~~~i~~i~-lDp-~G~hlli~~~~~~~g~~~Y~~~~~~k~k~L~kl 108 (936)
+.|+.+++||.+..+|. ...-+++|.-|+. .++.+- ++- .++-++.|+. +|.+--+...+..-....+.
T Consensus 41 ~~vav~lSngsv~lyd~~tg~~l~~fk~~~~-----~~N~vrf~~~ds~h~v~s~ss---DG~Vr~wD~Rs~~e~a~~~~ 112 (376)
T KOG1188|consen 41 TAVAVSLSNGSVRLYDKGTGQLLEEFKGPPA-----TTNGVRFISCDSPHGVISCSS---DGTVRLWDIRSQAESARISW 112 (376)
T ss_pred eeEEEEecCCeEEEEeccchhhhheecCCCC-----cccceEEecCCCCCeeEEecc---CCeEEEEEeecchhhhheec
Confidence 67899999999999999 7777888887743 233332 333 4555666676 89887776555422222222
Q ss_pred CC---ceEEEEEecCCCCCCCCcceEEEEcCC----CcEEEEEEecCCcccceeeEEeeeCCCCCceeeEEEEeeccCCC
Q 002318 109 KG---LVVNAVAWNRQQITEASTKEIILGTDT----GQLHEMAVDEKDKREKYIKLLFELNELPEAFMGLQMETASLSNG 181 (936)
Q Consensus 109 kg---~~I~sVaw~~~~~~~~st~~iLiGt~~----G~i~e~~i~~~~~~~~~~k~v~~l~~~~~~I~gi~~~~~~~~~~ 181 (936)
.+ -...|++-|- ..+-|-+||.. ..++...+-. ..+-+.++.+... .-||.|.|.. ++
T Consensus 113 ~~~~~~~f~~ld~nc------k~~ii~~GtE~~~s~A~v~lwDvR~---~qq~l~~~~eSH~--DDVT~lrFHP----~~ 177 (376)
T KOG1188|consen 113 TQQSGTPFICLDLNC------KKNIIACGTELTRSDASVVLWDVRS---EQQLLRQLNESHN--DDVTQLRFHP----SD 177 (376)
T ss_pred cCCCCCcceEeeccC------cCCeEEeccccccCceEEEEEEecc---ccchhhhhhhhcc--CcceeEEecC----CC
Confidence 33 3566666651 12355566654 3333333322 1222444444443 3499999874 33
Q ss_pred ceEEEEEECCCeEEEE
Q 002318 182 TRYYVMAVTPTRLYSF 197 (936)
Q Consensus 182 ~~~~i~ast~~rly~f 197 (936)
...++-.|+..-+--|
T Consensus 178 pnlLlSGSvDGLvnlf 193 (376)
T KOG1188|consen 178 PNLLLSGSVDGLVNLF 193 (376)
T ss_pred CCeEEeecccceEEee
Confidence 4566666665544434
No 192
>PRK02889 tolB translocation protein TolB; Provisional
Probab=79.22 E-value=56 Score=37.99 Aligned_cols=142 Identities=13% Similarity=0.145 Sum_probs=78.7
Q ss_pred CCEEEEEecC--CeEEEEeCCCCCceeeEcCCCCCCccceeEEEeCCCCCeEEEEeecCCCccEEEEecCCCCceeccCC
Q 002318 31 NDVIVLGTSK--GWLIRHDFGAGDSYDIDLSAGRPGEQSIHKVFVDPGGSHCIATIVGSGGAETFYTHAKWSKPRVLSKL 108 (936)
Q Consensus 31 ~n~l~l~~~~--g~l~ridl~~~~~~~~~l~~~~~~~~~i~~i~lDp~G~hlli~~~~~~~g~~~Y~~~~~~k~k~L~kl 108 (936)
..+.++...+ ..|+.+|..+.....+.-. ...+...-..|.|++++..+...+....|.++....+.+.+..+
T Consensus 164 ~~iayv~~~~~~~~L~~~D~dG~~~~~l~~~-----~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~l~~~ 238 (427)
T PRK02889 164 TRIAYVIKTGNRYQLQISDADGQNAQSALSS-----PEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRVVANF 238 (427)
T ss_pred cEEEEEEccCCccEEEEECCCCCCceEeccC-----CCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEEeecC
Confidence 5555665443 3677888844433322111 24567777889999988876522223455566665566777766
Q ss_pred CCceEEEEEecCCCCCCCCcceEEEE-cCCCc--EEEEEEecCCcccceeeEEeeeCCCCCceeeEEEEeeccCCCceEE
Q 002318 109 KGLVVNAVAWNRQQITEASTKEIILG-TDTGQ--LHEMAVDEKDKREKYIKLLFELNELPEAFMGLQMETASLSNGTRYY 185 (936)
Q Consensus 109 kg~~I~sVaw~~~~~~~~st~~iLiG-t~~G~--i~e~~i~~~~~~~~~~k~v~~l~~~~~~I~gi~~~~~~~~~~~~~~ 185 (936)
+| .+.+++|.++ ...+++. +.+|. ||...+..+ ..+++..- .+..+...|. .+.+.+
T Consensus 239 ~g-~~~~~~~SPD------G~~la~~~~~~g~~~Iy~~d~~~~-----~~~~lt~~---~~~~~~~~wS-----pDG~~l 298 (427)
T PRK02889 239 KG-SNSAPAWSPD------GRTLAVALSRDGNSQIYTVNADGS-----GLRRLTQS---SGIDTEPFFS-----PDGRSI 298 (427)
T ss_pred CC-CccceEECCC------CCEEEEEEccCCCceEEEEECCCC-----CcEECCCC---CCCCcCeEEc-----CCCCEE
Confidence 66 4568999843 2356654 45564 666555432 13333221 1234555665 233567
Q ss_pred EEEECC---CeEEEE
Q 002318 186 VMAVTP---TRLYSF 197 (936)
Q Consensus 186 i~ast~---~rly~f 197 (936)
++++.. ..+|.+
T Consensus 299 ~f~s~~~g~~~Iy~~ 313 (427)
T PRK02889 299 YFTSDRGGAPQIYRM 313 (427)
T ss_pred EEEecCCCCcEEEEE
Confidence 776652 356654
No 193
>TIGR00599 rad18 DNA repair protein rad18. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=78.89 E-value=1.2 Score=50.56 Aligned_cols=35 Identities=26% Similarity=0.687 Sum_probs=27.8
Q ss_pred ecccccccccchhhhhcccccccccccCCCCCCCCEEEEcCCChhHHHhHHHHH
Q 002318 830 IDRDEDCGVCRRKILVAGRDYRMARGYASVGPMAPFYVFPCGHAFHAQCLIAHV 883 (936)
Q Consensus 830 i~~~~~C~~C~k~L~~~~~~~~~~~~~~~~~~~~~fvvFpCgH~fH~~CL~~~~ 883 (936)
++..-.|.+|...+.. ++ +-+|||.|+..|+...+
T Consensus 23 Le~~l~C~IC~d~~~~------------------Pv-itpCgH~FCs~CI~~~l 57 (397)
T TIGR00599 23 LDTSLRCHICKDFFDV------------------PV-LTSCSHTFCSLCIRRCL 57 (397)
T ss_pred cccccCCCcCchhhhC------------------cc-CCCCCCchhHHHHHHHH
Confidence 4456789999987655 54 57999999999999765
No 194
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=78.56 E-value=18 Score=39.97 Aligned_cols=145 Identities=12% Similarity=0.064 Sum_probs=81.4
Q ss_pred CCEEEEEecCCeEEEEeC-CCCCceeeEcCCCCCCccceeEEEeCCCCCeEEEEeecCCCccEEEEecCCCCceeccC--
Q 002318 31 NDVIVLGTSKGWLIRHDF-GAGDSYDIDLSAGRPGEQSIHKVFVDPGGSHCIATIVGSGGAETFYTHAKWSKPRVLSK-- 107 (936)
Q Consensus 31 ~n~l~l~~~~g~l~ridl-~~~~~~~~~l~~~~~~~~~i~~i~lDp~G~hlli~~~~~~~g~~~Y~~~~~~k~k~L~k-- 107 (936)
++-++-|..+|+|..||+ ......++.-. .....+.+-+...|.-++-|.. +|..+.++..+-|+.....
T Consensus 202 GKr~~tgy~dgti~~Wn~ktg~p~~~~~~~----e~~~~~~~~~~~~~~~~~~g~~---e~~~~~~~~~sgKVv~~~n~~ 274 (399)
T KOG0296|consen 202 GKRILTGYDDGTIIVWNPKTGQPLHKITQA----EGLELPCISLNLAGSTLTKGNS---EGVACGVNNGSGKVVNCNNGT 274 (399)
T ss_pred CceEEEEecCceEEEEecCCCceeEEeccc----ccCcCCccccccccceeEeccC---CccEEEEccccceEEEecCCC
Confidence 456788889999999999 54433322200 0112233444444544444443 4555555544444333221
Q ss_pred ------CCCceEEEEEecCCCCCCCCc-ceEEEEcCCCcEEEEEEecCCcccceeeEEeeeCCCCCceeeEEEEeeccCC
Q 002318 108 ------LKGLVVNAVAWNRQQITEAST-KEIILGTDTGQLHEMAVDEKDKREKYIKLLFELNELPEAFMGLQMETASLSN 180 (936)
Q Consensus 108 ------lkg~~I~sVaw~~~~~~~~st-~~iLiGt~~G~i~e~~i~~~~~~~~~~k~v~~l~~~~~~I~gi~~~~~~~~~ 180 (936)
-....++||++.+.. ++ .=+-+|.-+|.|..+.+-.. .+|.....+ .+|+.+.|..
T Consensus 275 ~~~l~~~~e~~~esve~~~~s----s~lpL~A~G~vdG~i~iyD~a~~-----~~R~~c~he---~~V~~l~w~~----- 337 (399)
T KOG0296|consen 275 VPELKPSQEELDESVESIPSS----SKLPLAACGSVDGTIAIYDLAAS-----TLRHICEHE---DGVTKLKWLN----- 337 (399)
T ss_pred Cccccccchhhhhhhhhcccc----cccchhhcccccceEEEEecccc-----hhheeccCC---CceEEEEEcC-----
Confidence 123456666666321 22 23456788898888766432 234433443 5699999983
Q ss_pred CceEEEEEECCCeEEEEecC
Q 002318 181 GTRYYVMAVTPTRLYSFTGF 200 (936)
Q Consensus 181 ~~~~~i~ast~~rly~f~~~ 200 (936)
..+++-++.+..+++|..+
T Consensus 338 -t~~l~t~c~~g~v~~wDaR 356 (399)
T KOG0296|consen 338 -TDYLLTACANGKVRQWDAR 356 (399)
T ss_pred -cchheeeccCceEEeeecc
Confidence 3466666668999999763
No 195
>PRK01742 tolB translocation protein TolB; Provisional
Probab=78.52 E-value=74 Score=36.99 Aligned_cols=133 Identities=10% Similarity=0.110 Sum_probs=76.2
Q ss_pred CeEEEEeCCCCCceeeEcCCCCCCccceeEEEeCCCCCeEEEEeecCCCccEEEEecCCCCceeccCCCCceEEEEEecC
Q 002318 41 GWLIRHDFGAGDSYDIDLSAGRPGEQSIHKVFVDPGGSHCIATIVGSGGAETFYTHAKWSKPRVLSKLKGLVVNAVAWNR 120 (936)
Q Consensus 41 g~l~ridl~~~~~~~~~l~~~~~~~~~i~~i~lDp~G~hlli~~~~~~~g~~~Y~~~~~~k~k~L~klkg~~I~sVaw~~ 120 (936)
..|..+|.+..+... +.. +...+...-..|.|.+++.++...++...|.++....+.+.+..++|+ ..+++|.+
T Consensus 184 ~~i~i~d~dg~~~~~--lt~---~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~~~~g~-~~~~~wSP 257 (429)
T PRK01742 184 YEVRVADYDGFNQFI--VNR---SSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVVASFRGH-NGAPAFSP 257 (429)
T ss_pred EEEEEECCCCCCceE--ecc---CCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEEecCCCc-cCceeECC
Confidence 478888884433322 221 135678888899999998776511123455566655556667777764 45799994
Q ss_pred CCCCCCCcceEEEEc-CCCc--EEEEEEecCCcccceeeEEeeeCCCCCceeeEEEEeeccCCCceEEEEEEC---CCeE
Q 002318 121 QQITEASTKEIILGT-DTGQ--LHEMAVDEKDKREKYIKLLFELNELPEAFMGLQMETASLSNGTRYYVMAVT---PTRL 194 (936)
Q Consensus 121 ~~~~~~st~~iLiGt-~~G~--i~e~~i~~~~~~~~~~k~v~~l~~~~~~I~gi~~~~~~~~~~~~~~i~ast---~~rl 194 (936)
+ ...++++. .+|. ||...+..+ ..+++.. .++.+.+..|.. +.+.+++++. ..++
T Consensus 258 D------G~~La~~~~~~g~~~Iy~~d~~~~-----~~~~lt~---~~~~~~~~~wSp-----DG~~i~f~s~~~g~~~I 318 (429)
T PRK01742 258 D------GSRLAFASSKDGVLNIYVMGANGG-----TPSQLTS---GAGNNTEPSWSP-----DGQSILFTSDRSGSPQV 318 (429)
T ss_pred C------CCEEEEEEecCCcEEEEEEECCCC-----CeEeecc---CCCCcCCEEECC-----CCCEEEEEECCCCCceE
Confidence 3 23666654 5664 555544332 1333322 224467777763 2356666664 3467
Q ss_pred EEEe
Q 002318 195 YSFT 198 (936)
Q Consensus 195 y~f~ 198 (936)
|.+.
T Consensus 319 ~~~~ 322 (429)
T PRK01742 319 YRMS 322 (429)
T ss_pred EEEE
Confidence 7653
No 196
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=78.09 E-value=49 Score=39.37 Aligned_cols=113 Identities=14% Similarity=0.203 Sum_probs=71.6
Q ss_pred CceeEEEE--eCC-EEEEEecCCeEEEEeC--CCC-Ccee------eEcCCCCCCccceeEEEeCCCCCeEEEEeecCCC
Q 002318 22 GVITCMSA--GND-VIVLGTSKGWLIRHDF--GAG-DSYD------IDLSAGRPGEQSIHKVFVDPGGSHCIATIVGSGG 89 (936)
Q Consensus 22 ~~i~~l~v--~~n-~l~l~~~~g~l~ridl--~~~-~~~~------~~l~~~~~~~~~i~~i~lDp~G~hlli~~~~~~~ 89 (936)
|=|.|+|+ .|| ..+=|--.+.|+.||+ .++ .+.. -.++ .++..+|..+-+.|+| .+|++.. ..
T Consensus 118 DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~--sG~k~siYSLA~N~t~-t~ivsGg--te 192 (735)
T KOG0308|consen 118 DYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLG--SGPKDSIYSLAMNQTG-TIIVSGG--TE 192 (735)
T ss_pred chheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhccccccccCC--CCCccceeeeecCCcc-eEEEecC--cc
Confidence 56899998 333 3344556789999999 333 2222 2222 2346788999999999 4555432 13
Q ss_pred ccEEEEecCCCCceeccCCCCc--eEEEEEecCCCCCCCCcceEEEEcCCCcEEEEEEec
Q 002318 90 AETFYTHAKWSKPRVLSKLKGL--VVNAVAWNRQQITEASTKEIILGTDTGQLHEMAVDE 147 (936)
Q Consensus 90 g~~~Y~~~~~~k~k~L~klkg~--~I~sVaw~~~~~~~~st~~iLiGt~~G~i~e~~i~~ 147 (936)
+..-.+.-.+. +.+.||+|| .|+++-.+++ ..++|-|+++|.|=.-.+..
T Consensus 193 k~lr~wDprt~--~kimkLrGHTdNVr~ll~~dD------Gt~~ls~sSDgtIrlWdLgq 244 (735)
T KOG0308|consen 193 KDLRLWDPRTC--KKIMKLRGHTDNVRVLLVNDD------GTRLLSASSDGTIRLWDLGQ 244 (735)
T ss_pred cceEEeccccc--cceeeeeccccceEEEEEcCC------CCeEeecCCCceEEeeeccc
Confidence 44434443332 346677886 8999999842 34899999999887665543
No 197
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=77.73 E-value=35 Score=34.61 Aligned_cols=49 Identities=16% Similarity=0.142 Sum_probs=37.6
Q ss_pred HHHchhhHHHHHHhcCCh----hhHHHHHHHHHHHHHhcCCHHHHHHHHHHhc
Q 002318 370 VYLDMKEYAAALANCRDP----LQRDQVYLVQAEAAFATKDFHRAASFYAKIN 418 (936)
Q Consensus 370 ~ll~~~~f~~Al~~~~~~----~~~~~I~~~~~~~L~~~g~y~~Aa~~y~~~~ 418 (936)
.++..|+|++|++..+.. ..........|..++..|++++|.+.|.+..
T Consensus 40 ~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al 92 (234)
T TIGR02521 40 GYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRAL 92 (234)
T ss_pred HHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 477889999999887531 1224566678889999999999999988765
No 198
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=77.72 E-value=18 Score=39.28 Aligned_cols=109 Identities=16% Similarity=0.140 Sum_probs=73.9
Q ss_pred eeEEEEeCCEEEEEe--cCCeEEEEeCCCCCceeeEcCCCCCCccceeEEEeCCCCCeEEEEeecCCCccEEEEec----
Q 002318 24 ITCMSAGNDVIVLGT--SKGWLIRHDFGAGDSYDIDLSAGRPGEQSIHKVFVDPGGSHCIATIVGSGGAETFYTHA---- 97 (936)
Q Consensus 24 i~~l~v~~n~l~l~~--~~g~l~ridl~~~~~~~~~l~~~~~~~~~i~~i~lDp~G~hlli~~~~~~~g~~~Y~~~---- 97 (936)
|-.+...+|--+|.+ ....|..||+.+.....|+-. ..+-+..-+.|.|+.+++|.= +.+++.+..
T Consensus 190 ~i~iGiA~~~k~imsas~dt~i~lw~lkGq~L~~idtn-----q~~n~~aavSP~GRFia~~gF---TpDVkVwE~~f~k 261 (420)
T KOG2096|consen 190 IINIGIAGNAKYIMSASLDTKICLWDLKGQLLQSIDTN-----QSSNYDAAVSPDGRFIAVSGF---TPDVKVWEPIFTK 261 (420)
T ss_pred eEEEeecCCceEEEEecCCCcEEEEecCCceeeeeccc-----cccccceeeCCCCcEEEEecC---CCCceEEEEEecc
Confidence 556777777665554 456799999965556666544 245677888999999999865 677765542
Q ss_pred -C-CCCceeccCCCCc--eEEEEEecCCCCCCCCcceEEEEcCCCcEEEEEEe
Q 002318 98 -K-WSKPRVLSKLKGL--VVNAVAWNRQQITEASTKEIILGTDTGQLHEMAVD 146 (936)
Q Consensus 98 -~-~~k~k~L~klkg~--~I~sVaw~~~~~~~~st~~iLiGt~~G~i~e~~i~ 146 (936)
. ...++..-.|||+ -|.+.||++ ++.+++.-+++|.+-...++
T Consensus 262 dG~fqev~rvf~LkGH~saV~~~aFsn------~S~r~vtvSkDG~wriwdtd 308 (420)
T KOG2096|consen 262 DGTFQEVKRVFSLKGHQSAVLAAAFSN------SSTRAVTVSKDGKWRIWDTD 308 (420)
T ss_pred CcchhhhhhhheeccchhheeeeeeCC------CcceeEEEecCCcEEEeecc
Confidence 1 1224445557886 688999984 34488888999986544443
No 199
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=77.52 E-value=6.5 Score=49.56 Aligned_cols=61 Identities=21% Similarity=0.288 Sum_probs=46.3
Q ss_pred CCceeEEEEeC--CEEEEEecCCeEEEEeC-CCCCceeeEcCCCCCCccceeEEEeCCCCC--eEEEEee
Q 002318 21 RGVITCMSAGN--DVIVLGTSKGWLIRHDF-GAGDSYDIDLSAGRPGEQSIHKVFVDPGGS--HCIATIV 85 (936)
Q Consensus 21 ~~~i~~l~v~~--n~l~l~~~~g~l~ridl-~~~~~~~~~l~~~~~~~~~i~~i~lDp~G~--hlli~~~ 85 (936)
-|.||++++.. ++|++|++.|.+..||| -...+...+-|. ...|+++|++|+-. -..|++.
T Consensus 1195 hG~vTSi~idp~~~WlviGts~G~l~lWDLRF~~~i~sw~~P~----~~~i~~v~~~~~~~~~S~~vs~~ 1260 (1431)
T KOG1240|consen 1195 HGLVTSIVIDPWCNWLVIGTSRGQLVLWDLRFRVPILSWEHPA----RAPIRHVWLCPTYPQESVSVSAG 1260 (1431)
T ss_pred ccceeEEEecCCceEEEEecCCceEEEEEeecCceeecccCcc----cCCcceEEeeccCCCCceEEEec
Confidence 36799999865 69999999999999999 555555565553 47899999999854 3444443
No 200
>KOG3970 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=77.41 E-value=1.5 Score=44.34 Aligned_cols=35 Identities=23% Similarity=0.547 Sum_probs=30.2
Q ss_pred cccccccchhhhhcccccccccccCCCCCCCCEEEEcCCChhHHHhHHHHHh
Q 002318 833 DEDCGVCRRKILVAGRDYRMARGYASVGPMAPFYVFPCGHAFHAQCLIAHVT 884 (936)
Q Consensus 833 ~~~C~~C~k~L~~~~~~~~~~~~~~~~~~~~~fvvFpCgH~fH~~CL~~~~~ 884 (936)
+-.|..|+.+|.. + .-+..-|-|.||.+||.....
T Consensus 50 ~pNC~LC~t~La~-----g------------dt~RLvCyhlfHW~ClneraA 84 (299)
T KOG3970|consen 50 NPNCRLCNTPLAS-----G------------DTTRLVCYHLFHWKCLNERAA 84 (299)
T ss_pred CCCCceeCCcccc-----C------------cceeehhhhhHHHHHhhHHHh
Confidence 4579999999988 5 778889999999999987653
No 201
>PRK02889 tolB translocation protein TolB; Provisional
Probab=77.34 E-value=98 Score=35.97 Aligned_cols=114 Identities=15% Similarity=0.172 Sum_probs=64.0
Q ss_pred CCCceeEEEEeC--CEEEEEe-cC--CeEEEEeCCCCCceeeE-cCCCCCCccceeEEEeCCCCCeEEEEeecCCCccEE
Q 002318 20 GRGVITCMSAGN--DVIVLGT-SK--GWLIRHDFGAGDSYDID-LSAGRPGEQSIHKVFVDPGGSHCIATIVGSGGAETF 93 (936)
Q Consensus 20 ~~~~i~~l~v~~--n~l~l~~-~~--g~l~ridl~~~~~~~~~-l~~~~~~~~~i~~i~lDp~G~hlli~~~~~~~g~~~ 93 (936)
+++.+.+.+.+. +.|+++. .+ ..|+++|+...+...+. .+ ..+...-..|.|.+++++++..++.+.|
T Consensus 194 ~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~l~~~~------g~~~~~~~SPDG~~la~~~~~~g~~~Iy 267 (427)
T PRK02889 194 SPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRVVANFK------GSNSAPAWSPDGRTLAVALSRDGNSQIY 267 (427)
T ss_pred CCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEEeecCC------CCccceEECCCCCEEEEEEccCCCceEE
Confidence 345567777764 4565544 33 46999999322222221 11 2334566789999998765522233455
Q ss_pred EEecCCCCceeccCCCCceEEEEEecCCCCCCCCcceEEEEcCC-C--cEEEEEEe
Q 002318 94 YTHAKWSKPRVLSKLKGLVVNAVAWNRQQITEASTKEIILGTDT-G--QLHEMAVD 146 (936)
Q Consensus 94 Y~~~~~~k~k~L~klkg~~I~sVaw~~~~~~~~st~~iLiGt~~-G--~i~e~~i~ 146 (936)
-++....+.+.|..-. ....+.+|.++ .+.|+..+.+ | .||...++
T Consensus 268 ~~d~~~~~~~~lt~~~-~~~~~~~wSpD------G~~l~f~s~~~g~~~Iy~~~~~ 316 (427)
T PRK02889 268 TVNADGSGLRRLTQSS-GIDTEPFFSPD------GRSIYFTSDRGGAPQIYRMPAS 316 (427)
T ss_pred EEECCCCCcEECCCCC-CCCcCeEEcCC------CCEEEEEecCCCCcEEEEEECC
Confidence 5566655667776532 24567889843 2356655443 3 45555443
No 202
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=76.90 E-value=1.1e+02 Score=32.64 Aligned_cols=119 Identities=11% Similarity=0.065 Sum_probs=69.9
Q ss_pred CEEEEEecCCeEEEEeC-CCCCceeeEcCCCCCCccceeEEEeCCCCCeEEEEeecCCCccEEEEecCCCCce-eccCCC
Q 002318 32 DVIVLGTSKGWLIRHDF-GAGDSYDIDLSAGRPGEQSIHKVFVDPGGSHCIATIVGSGGAETFYTHAKWSKPR-VLSKLK 109 (936)
Q Consensus 32 n~l~l~~~~g~l~ridl-~~~~~~~~~l~~~~~~~~~i~~i~lDp~G~hlli~~~~~~~g~~~Y~~~~~~k~k-~L~klk 109 (936)
++++-+..+|.|.++|+ ....+..+..+ ..+..+.++|.|..++++.. .++..+.++....+.. .+. .
T Consensus 2 ~~~~s~~~d~~v~~~d~~t~~~~~~~~~~------~~~~~l~~~~dg~~l~~~~~--~~~~v~~~d~~~~~~~~~~~--~ 71 (300)
T TIGR03866 2 KAYVSNEKDNTISVIDTATLEVTRTFPVG------QRPRGITLSKDGKLLYVCAS--DSDTIQVIDLATGEVIGTLP--S 71 (300)
T ss_pred cEEEEecCCCEEEEEECCCCceEEEEECC------CCCCceEECCCCCEEEEEEC--CCCeEEEEECCCCcEEEecc--C
Confidence 34556667899999999 55545555433 23566888999998877643 1566666665544332 233 2
Q ss_pred CceEEEEEecCCCCCCCCcceEEEEc-CCCcEEEEEEecCCcccceeeEEeeeCCCCCceeeEEEE
Q 002318 110 GLVVNAVAWNRQQITEASTKEIILGT-DTGQLHEMAVDEKDKREKYIKLLFELNELPEAFMGLQME 174 (936)
Q Consensus 110 g~~I~sVaw~~~~~~~~st~~iLiGt-~~G~i~e~~i~~~~~~~~~~k~v~~l~~~~~~I~gi~~~ 174 (936)
+..+..++|++. .+.+.+++ .+|.|....+... +.+..++. ...+.++.|.
T Consensus 72 ~~~~~~~~~~~~------g~~l~~~~~~~~~l~~~d~~~~-------~~~~~~~~-~~~~~~~~~~ 123 (300)
T TIGR03866 72 GPDPELFALHPN------GKILYIANEDDNLVTVIDIETR-------KVLAEIPV-GVEPEGMAVS 123 (300)
T ss_pred CCCccEEEECCC------CCEEEEEcCCCCeEEEEECCCC-------eEEeEeeC-CCCcceEEEC
Confidence 445678899842 22454543 4687777766432 22222321 1336777775
No 203
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=76.85 E-value=41 Score=38.84 Aligned_cols=167 Identities=11% Similarity=0.101 Sum_probs=95.1
Q ss_pred hhcCCCceeEEEEeCC--EEEEEecCCeEEEEeC-CCCCce-eeEcCCCCCCccceeEEEeCCCCCeEEEEeecCCCccE
Q 002318 17 AAKGRGVITCMSAGND--VIVLGTSKGWLIRHDF-GAGDSY-DIDLSAGRPGEQSIHKVFVDPGGSHCIATIVGSGGAET 92 (936)
Q Consensus 17 ~~~~~~~i~~l~v~~n--~l~l~~~~g~l~ridl-~~~~~~-~~~l~~~~~~~~~i~~i~lDp~G~hlli~~~~~~~g~~ 92 (936)
++-+..+|++++|-.+ -++-|--.-.|..||+ +-+... .+..-.+ ...-.|+.+--.|||..+++.+.++ .-
T Consensus 163 l~hgtk~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P-~E~h~i~sl~ys~Tg~~iLvvsg~a---qa 238 (641)
T KOG0772|consen 163 LKHGTKIVSALAVDPSGARFVSGSLDYTVKFWDFQGMDASMRSFRQLQP-CETHQINSLQYSVTGDQILVVSGSA---QA 238 (641)
T ss_pred ccCCceEEEEeeecCCCceeeeccccceEEEEecccccccchhhhccCc-ccccccceeeecCCCCeEEEEecCc---ce
Confidence 3445567888998776 3455666678999999 333322 1211111 1235778888889999888877622 11
Q ss_pred EEEec----------CCCCceeccCCCCc--eEEEEEecCCCCCCCCcceEEEEcCCCcEEEEEEecCCcccceeeEEee
Q 002318 93 FYTHA----------KWSKPRVLSKLKGL--VVNAVAWNRQQITEASTKEIILGTDTGQLHEMAVDEKDKREKYIKLLFE 160 (936)
Q Consensus 93 ~Y~~~----------~~~k~k~L~klkg~--~I~sVaw~~~~~~~~st~~iLiGt~~G~i~e~~i~~~~~~~~~~k~v~~ 160 (936)
-.+.+ .-.-.+-+..-||| .++|.+|+|. +...||....+|.+=.-.++..++--+.+|..-.
T Consensus 239 kl~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~-----~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~ 313 (641)
T KOG0772|consen 239 KLLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPD-----NKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKPA 313 (641)
T ss_pred eEEccCCceeeeeeccchhhhhhhccCCceeeeeccccccC-----cccceEEecCCCcEEEEecCCchhheeEEeeccC
Confidence 11111 11113445556775 7899999964 3458999999998766555543221122222211
Q ss_pred eCCCCCceeeEEEEeeccCCCceEEEEEECCCeEEEEe
Q 002318 161 LNELPEAFMGLQMETASLSNGTRYYVMAVTPTRLYSFT 198 (936)
Q Consensus 161 l~~~~~~I~gi~~~~~~~~~~~~~~i~ast~~rly~f~ 198 (936)
- +..-|++.-.|.+- + .+|+-+.-...+-.|.
T Consensus 314 ~-g~Rv~~tsC~~nrd---g--~~iAagc~DGSIQ~W~ 345 (641)
T KOG0772|consen 314 G-GKRVPVTSCAWNRD---G--KLIAAGCLDGSIQIWD 345 (641)
T ss_pred C-CcccCceeeecCCC---c--chhhhcccCCceeeee
Confidence 1 12245777777642 2 3444444467777786
No 204
>PRK04922 tolB translocation protein TolB; Provisional
Probab=76.48 E-value=72 Score=37.12 Aligned_cols=132 Identities=11% Similarity=0.127 Sum_probs=75.3
Q ss_pred eEEEEeCCCCCceeeEcCCCCCCccceeEEEeCCCCCeEEEEeecCCCccEEEEecCCCCceeccCCCCceEEEEEecCC
Q 002318 42 WLIRHDFGAGDSYDIDLSAGRPGEQSIHKVFVDPGGSHCIATIVGSGGAETFYTHAKWSKPRVLSKLKGLVVNAVAWNRQ 121 (936)
Q Consensus 42 ~l~ridl~~~~~~~~~l~~~~~~~~~i~~i~lDp~G~hlli~~~~~~~g~~~Y~~~~~~k~k~L~klkg~~I~sVaw~~~ 121 (936)
.|.++|....+...+.- +...+.....+|.|.+++.++...+....|.++....+.+.+..++| ...+++|.++
T Consensus 185 ~l~i~D~~g~~~~~lt~-----~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~l~~~~g-~~~~~~~SpD 258 (433)
T PRK04922 185 ALQVADSDGYNPQTILR-----SAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQRELVASFRG-INGAPSFSPD 258 (433)
T ss_pred EEEEECCCCCCceEeec-----CCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEEeccCCC-CccCceECCC
Confidence 57788884333332211 13456777778999998887652223456666766666677777666 3457899843
Q ss_pred CCCCCCcceEEEE-cCCC--cEEEEEEecCCcccceeeEEeeeCCCCCceeeEEEEeeccCCCceEEEEEECC---CeEE
Q 002318 122 QITEASTKEIILG-TDTG--QLHEMAVDEKDKREKYIKLLFELNELPEAFMGLQMETASLSNGTRYYVMAVTP---TRLY 195 (936)
Q Consensus 122 ~~~~~st~~iLiG-t~~G--~i~e~~i~~~~~~~~~~k~v~~l~~~~~~I~gi~~~~~~~~~~~~~~i~ast~---~rly 195 (936)
.+.+++. +.+| .||...+..+ .++++..-. +..+...|. .+.+.+++++.. ..+|
T Consensus 259 ------G~~l~~~~s~~g~~~Iy~~d~~~g-----~~~~lt~~~---~~~~~~~~s-----pDG~~l~f~sd~~g~~~iy 319 (433)
T PRK04922 259 ------GRRLALTLSRDGNPEIYVMDLGSR-----QLTRLTNHF---GIDTEPTWA-----PDGKSIYFTSDRGGRPQIY 319 (433)
T ss_pred ------CCEEEEEEeCCCCceEEEEECCCC-----CeEECccCC---CCccceEEC-----CCCCEEEEEECCCCCceEE
Confidence 2256554 3445 5888776543 134432221 224555664 233577776642 2477
Q ss_pred EEe
Q 002318 196 SFT 198 (936)
Q Consensus 196 ~f~ 198 (936)
.+.
T Consensus 320 ~~d 322 (433)
T PRK04922 320 RVA 322 (433)
T ss_pred EEE
Confidence 553
No 205
>TIGR00570 cdk7 CDK-activating kinase assembly factor MAT1. All proteins in this family for which functions are known are cyclin dependent protein kinases that are components of TFIIH, a complex that is involved in nucleotide excision repair and transcription initiation. Also known as MAT1 (menage a trois 1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=76.30 E-value=1.3 Score=48.05 Aligned_cols=37 Identities=22% Similarity=0.477 Sum_probs=27.7
Q ss_pred cccccccchhhhhcccccccccccCCCCCCCCEEEEcCCChhHHHhHHHHH
Q 002318 833 DEDCGVCRRKILVAGRDYRMARGYASVGPMAPFYVFPCGHAFHAQCLIAHV 883 (936)
Q Consensus 833 ~~~C~~C~k~L~~~~~~~~~~~~~~~~~~~~~fvvFpCgH~fH~~CL~~~~ 883 (936)
+..|++|......++ + ..|.+.+|||.|...|+....
T Consensus 3 ~~~CP~Ck~~~y~np---~-----------~kl~i~~CGH~~C~sCv~~l~ 39 (309)
T TIGR00570 3 DQGCPRCKTTKYRNP---S-----------LKLMVNVCGHTLCESCVDLLF 39 (309)
T ss_pred CCCCCcCCCCCccCc---c-----------cccccCCCCCcccHHHHHHHh
Confidence 468999998644411 1 156777999999999999865
No 206
>PRK04792 tolB translocation protein TolB; Provisional
Probab=76.28 E-value=89 Score=36.62 Aligned_cols=145 Identities=11% Similarity=0.126 Sum_probs=79.4
Q ss_pred EeCCEEEEEecCC-----eEEEEeCCCCCceeeEcCCCCCCccceeEEEeCCCCCeEEEEeecCCCccEEEEecCCCCce
Q 002318 29 AGNDVIVLGTSKG-----WLIRHDFGAGDSYDIDLSAGRPGEQSIHKVFVDPGGSHCIATIVGSGGAETFYTHAKWSKPR 103 (936)
Q Consensus 29 v~~n~l~l~~~~g-----~l~ridl~~~~~~~~~l~~~~~~~~~i~~i~lDp~G~hlli~~~~~~~g~~~Y~~~~~~k~k 103 (936)
+..++.|+....| .|...|....+...+ .. +...+...-.+|.|.+++..+...+....|.++....+.+
T Consensus 181 f~~riayv~~~~~~~~~~~l~i~d~dG~~~~~l-~~----~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~ 255 (448)
T PRK04792 181 FLTRIAYVVVNDKDKYPYQLMIADYDGYNEQML-LR----SPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVRE 255 (448)
T ss_pred ccCEEEEEEeeCCCCCceEEEEEeCCCCCceEe-ec----CCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeE
Confidence 4455556655443 566667733322211 11 1245666777899999888765222335666666666677
Q ss_pred eccCCCCceEEEEEecCCCCCCCCcceEEE-EcCCCc--EEEEEEecCCcccceeeEEeeeCCCCCceeeEEEEeeccCC
Q 002318 104 VLSKLKGLVVNAVAWNRQQITEASTKEIIL-GTDTGQ--LHEMAVDEKDKREKYIKLLFELNELPEAFMGLQMETASLSN 180 (936)
Q Consensus 104 ~L~klkg~~I~sVaw~~~~~~~~st~~iLi-Gt~~G~--i~e~~i~~~~~~~~~~k~v~~l~~~~~~I~gi~~~~~~~~~ 180 (936)
.+..++|. ..+.+|.++ ...|++ .+.+|. ||...+..+ ..+++..-. .......|..
T Consensus 256 ~lt~~~g~-~~~~~wSPD------G~~La~~~~~~g~~~Iy~~dl~tg-----~~~~lt~~~---~~~~~p~wSp----- 315 (448)
T PRK04792 256 KVTSFPGI-NGAPRFSPD------GKKLALVLSKDGQPEIYVVDIATK-----ALTRITRHR---AIDTEPSWHP----- 315 (448)
T ss_pred EecCCCCC-cCCeeECCC------CCEEEEEEeCCCCeEEEEEECCCC-----CeEECccCC---CCccceEECC-----
Confidence 78777664 347899843 225655 455564 777666543 133332211 2345556652
Q ss_pred CceEEEEEEC---CCeEEEEe
Q 002318 181 GTRYYVMAVT---PTRLYSFT 198 (936)
Q Consensus 181 ~~~~~i~ast---~~rly~f~ 198 (936)
+.+.+++++. ...+|.+.
T Consensus 316 DG~~I~f~s~~~g~~~Iy~~d 336 (448)
T PRK04792 316 DGKSLIFTSERGGKPQIYRVN 336 (448)
T ss_pred CCCEEEEEECCCCCceEEEEE
Confidence 2356666554 23566553
No 207
>PHA02926 zinc finger-like protein; Provisional
Probab=76.00 E-value=3 Score=42.76 Aligned_cols=43 Identities=21% Similarity=0.588 Sum_probs=29.8
Q ss_pred cccccccccchhhhhccc-ccccccccCCCCCCCCEEEE-cCCChhHHHhHHHHHhh
Q 002318 831 DRDEDCGVCRRKILVAGR-DYRMARGYASVGPMAPFYVF-PCGHAFHAQCLIAHVTQ 885 (936)
Q Consensus 831 ~~~~~C~~C~k~L~~~~~-~~~~~~~~~~~~~~~~fvvF-pCgH~fH~~CL~~~~~~ 885 (936)
+.+..|++|-..++.... +.| .|-+. +|+|+|+.+|+......
T Consensus 168 SkE~eCgICmE~I~eK~~~~eR------------rFGIL~~CnHsFCl~CIr~Wr~~ 212 (242)
T PHA02926 168 SKEKECGICYEVVYSKRLENDR------------YFGLLDSCNHIFCITCINIWHRT 212 (242)
T ss_pred cCCCCCccCccccccccccccc------------cccccCCCCchHHHHHHHHHHHh
Confidence 356789999988765210 002 34455 69999999999987653
No 208
>PRK03629 tolB translocation protein TolB; Provisional
Probab=75.97 E-value=1.2e+02 Score=35.14 Aligned_cols=116 Identities=9% Similarity=0.163 Sum_probs=68.2
Q ss_pred cCCCceeEEEEeCC--EEEEE-ec--CCeEEEEeCCCCCceeeE-cCCCCCCccceeEEEeCCCCCeEEEEeecCCCccE
Q 002318 19 KGRGVITCMSAGND--VIVLG-TS--KGWLIRHDFGAGDSYDID-LSAGRPGEQSIHKVFVDPGGSHCIATIVGSGGAET 92 (936)
Q Consensus 19 ~~~~~i~~l~v~~n--~l~l~-~~--~g~l~ridl~~~~~~~~~-l~~~~~~~~~i~~i~lDp~G~hlli~~~~~~~g~~ 92 (936)
.+++.+.+.+.+.+ .|++. .. ...|+++|+...+...+. .+ ..+...-..|.|.+++++....++.+.
T Consensus 196 ~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~l~~~~------~~~~~~~~SPDG~~La~~~~~~g~~~I 269 (429)
T PRK03629 196 RSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVASFP------RHNGAPAFSPDGSKLAFALSKTGSLNL 269 (429)
T ss_pred cCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEEccCCC------CCcCCeEECCCCCEEEEEEcCCCCcEE
Confidence 34455677777755 45443 22 346899999333332221 22 123346789999999887542223356
Q ss_pred EEEecCCCCceeccCCCCceEEEEEecCCCCCCCCcceEEEEcCCC---cEEEEEEec
Q 002318 93 FYTHAKWSKPRVLSKLKGLVVNAVAWNRQQITEASTKEIILGTDTG---QLHEMAVDE 147 (936)
Q Consensus 93 ~Y~~~~~~k~k~L~klkg~~I~sVaw~~~~~~~~st~~iLiGt~~G---~i~e~~i~~ 147 (936)
|.++....+.+.|.... ..+.+.+|.++ .+.|+..+.++ .||...++.
T Consensus 270 ~~~d~~tg~~~~lt~~~-~~~~~~~wSPD------G~~I~f~s~~~g~~~Iy~~d~~~ 320 (429)
T PRK03629 270 YVMDLASGQIRQVTDGR-SNNTEPTWFPD------SQNLAYTSDQAGRPQVYKVNING 320 (429)
T ss_pred EEEECCCCCEEEccCCC-CCcCceEECCC------CCEEEEEeCCCCCceEEEEECCC
Confidence 66677666777777532 46788999843 23566665543 577666544
No 209
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=75.90 E-value=4.2 Score=44.17 Aligned_cols=153 Identities=14% Similarity=0.054 Sum_probs=57.0
Q ss_pred hhHHHHHHHHHhcccHHHHHHHHhCCC---CchhhHHhhHHHHHh-HChHHHHHHHHc---cCCCCCCc-chhHhhhcCC
Q 002318 535 EQHEIVVHHYIQQGEAKKALQMLRKPA---VPIDLQYKFAPDLIM-LDAYETVESWMT---TNNLNPRK-LIPAMMRYSS 606 (936)
Q Consensus 535 ~dy~~ll~~yi~~~~~~~AL~~L~~~~---d~~~li~k~~~~Ll~-~~p~~ti~ll~~---~~~ld~~~-li~~L~~~~~ 606 (936)
+++..++.+ ...+++++|++++.+.- .....+..++..+.. .+.+++.+++-+ ....+.+. +.-.+-.+..
T Consensus 79 ~~~~~l~~l-~~~~~~~~A~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~ 157 (280)
T PF13429_consen 79 QDYERLIQL-LQDGDPEEALKLAEKAYERDGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYE 157 (280)
T ss_dssp ----------------------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHH
T ss_pred ccccccccc-cccccccccccccccccccccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHH
Confidence 355566666 67788888888775431 112333333332222 233344444322 11111111 1111111100
Q ss_pred CCCCCCChHHHHHHHHHHHhhcCCCCHhHHHHHHHHhhcCCChHHHHHHHHHhhCCCCCCCCcccCChHHHHHHHHhcCc
Q 002318 607 EPHAKNETHEVIKYLEFCVHRLHNEDPGVHNLLLSLYAKQEDDSALLRFLQCKFGKGRENGPEFFYDPKYALRLCLKEKR 686 (936)
Q Consensus 607 ~~~~~~~~~~~~~YLe~li~~~~~~~~~~hn~ll~Ly~~~~~~~~Ll~fL~~~~~~~~~~~~~~~yd~~~aLrlc~~~~~ 686 (936)
. ......++++++..+...+ .++.+.+.++.++++.++..++...|+..... . -....+
T Consensus 158 ~---~G~~~~A~~~~~~al~~~P-~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~-------~----------~~~~~~ 216 (280)
T PF13429_consen 158 Q---LGDPDKALRDYRKALELDP-DDPDARNALAWLLIDMGDYDEAREALKRLLKA-------A----------PDDPDL 216 (280)
T ss_dssp H---CCHHHHHHHHHHHHHHH-T-T-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH------------------HTSCCH
T ss_pred H---cCCHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHCCChHHHHHHHHHHHHH-------C----------cCHHHH
Confidence 0 0235678899999887766 46788999999999876555544454443100 0 011123
Q ss_pred ceeeehhhhccccHHHHHHHHHh
Q 002318 687 MRACVHIYGMMSMHEEAVALALQ 709 (936)
Q Consensus 687 ~~~~v~L~~~~g~~~eAl~l~l~ 709 (936)
.......|..+|++++|+..+-.
T Consensus 217 ~~~la~~~~~lg~~~~Al~~~~~ 239 (280)
T PF13429_consen 217 WDALAAAYLQLGRYEEALEYLEK 239 (280)
T ss_dssp CHHHHHHHHHHT-HHHHHHHHHH
T ss_pred HHHHHHHhccccccccccccccc
Confidence 34456678899999999998764
No 210
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=75.86 E-value=72 Score=36.59 Aligned_cols=148 Identities=17% Similarity=0.238 Sum_probs=96.8
Q ss_pred eEEEEeCCEEEEEecCCeEEEEeCCCCCceeeEcCCCCCCccceeEEEeCCCCCeEEEEeecCCCccEEE-EecCCCCce
Q 002318 25 TCMSAGNDVIVLGTSKGWLIRHDFGAGDSYDIDLSAGRPGEQSIHKVFVDPGGSHCIATIVGSGGAETFY-THAKWSKPR 103 (936)
Q Consensus 25 ~~l~v~~n~l~l~~~~g~l~ridl~~~~~~~~~l~~~~~~~~~i~~i~lDp~G~hlli~~~~~~~g~~~Y-~~~~~~k~k 103 (936)
-.+++.++-++...+.|+.+..+. .....++++.+. ..+-.++-.||.| .+|.++ +|+..= .+...-++|
T Consensus 325 edfa~~~Gd~ia~VSRGkaFi~~~--~~~~~iqv~~~~--~VrY~r~~~~~e~--~vigt~---dgD~l~iyd~~~~e~k 395 (668)
T COG4946 325 EDFAVVNGDYIALVSRGKAFIMRP--WDGYSIQVGKKG--GVRYRRIQVDPEG--DVIGTN---DGDKLGIYDKDGGEVK 395 (668)
T ss_pred hhhccCCCcEEEEEecCcEEEECC--CCCeeEEcCCCC--ceEEEEEccCCcc--eEEecc---CCceEEEEecCCceEE
Confidence 446788888888888999999887 222345666442 3666778888875 688888 786543 334444555
Q ss_pred eccCCCCceEEEEEecCCCCCCCCcceEEEEcCCCcEEEEEEecCCcccceeeEEeeeCCCCCceeeEEEEeeccCCCce
Q 002318 104 VLSKLKGLVVNAVAWNRQQITEASTKEIILGTDTGQLHEMAVDEKDKREKYIKLLFELNELPEAFMGLQMETASLSNGTR 183 (936)
Q Consensus 104 ~L~klkg~~I~sVaw~~~~~~~~st~~iLiGt~~G~i~e~~i~~~~~~~~~~k~v~~l~~~~~~I~gi~~~~~~~~~~~~ 183 (936)
.+.+--| .|.+|+-.+ +.+.+++|..++.|..+.|+.++ ++.+ +-++ .+-|+++.|. .+.+
T Consensus 396 r~e~~lg-~I~av~vs~------dGK~~vvaNdr~el~vididngn-----v~~i-dkS~-~~lItdf~~~-----~nsr 456 (668)
T COG4946 396 RIEKDLG-NIEAVKVSP------DGKKVVVANDRFELWVIDIDNGN-----VRLI-DKSE-YGLITDFDWH-----PNSR 456 (668)
T ss_pred EeeCCcc-ceEEEEEcC------CCcEEEEEcCceEEEEEEecCCC-----eeEe-cccc-cceeEEEEEc-----CCce
Confidence 5543223 799999983 23468999999999999997652 2332 2222 3569999997 3457
Q ss_pred EEEEEE------CCCeEEEEecC
Q 002318 184 YYVMAV------TPTRLYSFTGF 200 (936)
Q Consensus 184 ~~i~as------t~~rly~f~~~ 200 (936)
|++.+- -.-+||...|.
T Consensus 457 ~iAYafP~gy~tq~Iklydm~~~ 479 (668)
T COG4946 457 WIAYAFPEGYYTQSIKLYDMDGG 479 (668)
T ss_pred eEEEecCcceeeeeEEEEecCCC
Confidence 777642 23466766663
No 211
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=75.72 E-value=21 Score=42.74 Aligned_cols=77 Identities=16% Similarity=0.227 Sum_probs=49.3
Q ss_pred hhHHHHHHchhhHHHHHHhcC---ChhhHHHHHHHHHHHHHhcCCHHHHHHHHHHhcCCCChHHHHHHhcCcChHHHHHH
Q 002318 365 RDMWKVYLDMKEYAAALANCR---DPLQRDQVYLVQAEAAFATKDFHRAASFYAKINYILSFEEITLKFISVSEQDALRT 441 (936)
Q Consensus 365 ~~~W~~ll~~~~f~~Al~~~~---~~~~~~~I~~~~~~~L~~~g~y~~Aa~~y~~~~~~~~~E~v~lkFl~~~~~~~L~~ 441 (936)
.+...+|=+.|+++.|..++. .|...-..+..+|+.|=+.|+|.+|-++|.... .+..-+.++-..+..+..+.
T Consensus 795 ~dai~my~k~~kw~da~kla~e~~~~e~t~~~yiakaedldehgkf~eaeqlyiti~---~p~~aiqmydk~~~~ddmir 871 (1636)
T KOG3616|consen 795 KDAIDMYGKAGKWEDAFKLAEECHGPEATISLYIAKAEDLDEHGKFAEAEQLYITIG---EPDKAIQMYDKHGLDDDMIR 871 (1636)
T ss_pred HHHHHHHhccccHHHHHHHHHHhcCchhHHHHHHHhHHhHHhhcchhhhhheeEEcc---CchHHHHHHHhhCcchHHHH
Confidence 344445666677777776654 355556677788888888999999988887665 34455555555554444444
Q ss_pred HHH
Q 002318 442 FLL 444 (936)
Q Consensus 442 YL~ 444 (936)
.+.
T Consensus 872 lv~ 874 (1636)
T KOG3616|consen 872 LVE 874 (1636)
T ss_pred HHH
Confidence 444
No 212
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=75.63 E-value=82 Score=32.87 Aligned_cols=48 Identities=23% Similarity=0.290 Sum_probs=38.8
Q ss_pred HHchhhHHHHHHhcCC-----hh--hHHHHHHHHHHHHHhcCCHHHHHHHHHHhc
Q 002318 371 YLDMKEYAAALANCRD-----PL--QRDQVYLVQAEAAFATKDFHRAASFYAKIN 418 (936)
Q Consensus 371 ll~~~~f~~Al~~~~~-----~~--~~~~I~~~~~~~L~~~g~y~~Aa~~y~~~~ 418 (936)
++..|+|++|+...+. |. .........|..++..|+|++|...|.+..
T Consensus 43 ~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l 97 (235)
T TIGR03302 43 ALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFI 97 (235)
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 7788999999988652 32 234667888999999999999999998875
No 213
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=75.56 E-value=57 Score=37.00 Aligned_cols=106 Identities=15% Similarity=0.137 Sum_probs=64.4
Q ss_pred eEEEEeCCEEEEEecCCeEEEEeC-CCCCceeeEcCCCCCCccceeEEEeCCCCCeEEEEeecCCCccEEEEecCCCCce
Q 002318 25 TCMSAGNDVIVLGTSKGWLIRHDF-GAGDSYDIDLSAGRPGEQSIHKVFVDPGGSHCIATIVGSGGAETFYTHAKWSKPR 103 (936)
Q Consensus 25 ~~l~v~~n~l~l~~~~g~l~ridl-~~~~~~~~~l~~~~~~~~~i~~i~lDp~G~hlli~~~~~~~g~~~Y~~~~~~k~k 103 (936)
...++.++.++++..+|.|+.+|. .+..+-+.+++.... ...-++ +..+++.+. +|..|-++...-+.+
T Consensus 59 ~~p~v~~~~v~v~~~~g~v~a~d~~tG~~~W~~~~~~~~~-----~~p~v~--~~~v~v~~~---~g~l~ald~~tG~~~ 128 (377)
T TIGR03300 59 LQPAVAGGKVYAADADGTVVALDAETGKRLWRVDLDERLS-----GGVGAD--GGLVFVGTE---KGEVIALDAEDGKEL 128 (377)
T ss_pred cceEEECCEEEEECCCCeEEEEEccCCcEeeeecCCCCcc-----cceEEc--CCEEEEEcC---CCEEEEEECCCCcEe
Confidence 456788999999999999999998 776665666653211 112222 667777776 677776765433321
Q ss_pred eccCCCCceEEEEEecCCCCCCCCcceEEEEcCCCcEEEEEEecC
Q 002318 104 VLSKLKGLVVNAVAWNRQQITEASTKEIILGTDTGQLHEMAVDEK 148 (936)
Q Consensus 104 ~L~klkg~~I~sVaw~~~~~~~~st~~iLiGt~~G~i~e~~i~~~ 148 (936)
--.++.+. +. ..+.. ..+.+++++.+|.|+-.....+
T Consensus 129 W~~~~~~~-~~----~~p~v---~~~~v~v~~~~g~l~a~d~~tG 165 (377)
T TIGR03300 129 WRAKLSSE-VL----SPPLV---ANGLVVVRTNDGRLTALDAATG 165 (377)
T ss_pred eeeccCce-ee----cCCEE---ECCEEEEECCCCeEEEEEcCCC
Confidence 11112221 11 11111 2357899999999988776543
No 214
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=75.13 E-value=15 Score=43.07 Aligned_cols=102 Identities=17% Similarity=0.186 Sum_probs=69.0
Q ss_pred HHHHHhhcCCCceeEEEEeC--CEEEEEecCCeEEEEeC-CCCCc-eeeEcCCCCCCccceeEEEeCCCCCeEEEEeecC
Q 002318 12 VLERYAAKGRGVITCMSAGN--DVIVLGTSKGWLIRHDF-GAGDS-YDIDLSAGRPGEQSIHKVFVDPGGSHCIATIVGS 87 (936)
Q Consensus 12 ~~~~~~~~~~~~i~~l~v~~--n~l~l~~~~g~l~ridl-~~~~~-~~~~l~~~~~~~~~i~~i~lDp~G~hlli~~~~~ 87 (936)
-+.+.+..|..-|+.|+++. +.|++|...+++.-+|+ -.+.+ .....+ ...++.+-.++.=--+.++++
T Consensus 598 elvKkL~tg~kwiS~msihp~GDnli~gs~d~k~~WfDldlsskPyk~lr~H-----~~avr~Va~H~ryPLfas~sd-- 670 (733)
T KOG0650|consen 598 ELVKKLLTGSKWISSMSIHPNGDNLILGSYDKKMCWFDLDLSSKPYKTLRLH-----EKAVRSVAFHKRYPLFASGSD-- 670 (733)
T ss_pred HHHHHHhcCCeeeeeeeecCCCCeEEEecCCCeeEEEEcccCcchhHHhhhh-----hhhhhhhhhccccceeeeecC--
Confidence 44566677777899999999 89999999999999999 44333 334444 235666666654433334444
Q ss_pred CCccEEEEec-------CCCCceeccCCCCceEE------EEEecCC
Q 002318 88 GGAETFYTHA-------KWSKPRVLSKLKGLVVN------AVAWNRQ 121 (936)
Q Consensus 88 ~~g~~~Y~~~-------~~~k~k~L~klkg~~I~------sVaw~~~ 121 (936)
+|+.+..|. +.+-+-+|++|+|+..+ .+.|.|.
T Consensus 671 -Dgtv~Vfhg~VY~Dl~qnpliVPlK~L~gH~~~~~~gVLd~~wHP~ 716 (733)
T KOG0650|consen 671 -DGTVIVFHGMVYNDLLQNPLIVPLKRLRGHEKTNDLGVLDTIWHPR 716 (733)
T ss_pred -CCcEEEEeeeeehhhhcCCceEeeeeccCceeecccceEeecccCC
Confidence 687764442 33446789999998665 6779854
No 215
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=74.96 E-value=1.1e+02 Score=35.28 Aligned_cols=160 Identities=9% Similarity=0.114 Sum_probs=96.9
Q ss_pred HHHHhhcCCCceeEEEEeCCEEEEE--ecCCeEEEEeC-CCCCceeeEcCCCCCCccceeEEEeCCCCCeEEEEeecCCC
Q 002318 13 LERYAAKGRGVITCMSAGNDVIVLG--TSKGWLIRHDF-GAGDSYDIDLSAGRPGEQSIHKVFVDPGGSHCIATIVGSGG 89 (936)
Q Consensus 13 ~~~~~~~~~~~i~~l~v~~n~l~l~--~~~g~l~ridl-~~~~~~~~~l~~~~~~~~~i~~i~lDp~G~hlli~~~~~~~ 89 (936)
+.|.+..-.+.|+|+.-+++==+|| -..|-|+...+ .......+..+. .+.|+.+-..|.-+|+++... .+
T Consensus 113 ~hr~lkdh~stvt~v~YN~~DeyiAsvs~gGdiiih~~~t~~~tt~f~~~s----gqsvRll~ys~skr~lL~~as--d~ 186 (673)
T KOG4378|consen 113 IHRFLKDHQSTVTYVDYNNTDEYIASVSDGGDIIIHGTKTKQKTTTFTIDS----GQSVRLLRYSPSKRFLLSIAS--DK 186 (673)
T ss_pred HhhhccCCcceeEEEEecCCcceeEEeccCCcEEEEecccCccccceecCC----CCeEEEeecccccceeeEeec--cC
Confidence 3344444456799999988855554 46788999888 666666676662 356777888888888776643 27
Q ss_pred ccEEEEecCC--CCceeccCCCCceEEEEEecCCCCCCCCcceEEEE--cCCCcEEEEEEecCCcccceeeEEeeeCCCC
Q 002318 90 AETFYTHAKW--SKPRVLSKLKGLVVNAVAWNRQQITEASTKEIILG--TDTGQLHEMAVDEKDKREKYIKLLFELNELP 165 (936)
Q Consensus 90 g~~~Y~~~~~--~k~k~L~klkg~~I~sVaw~~~~~~~~st~~iLiG--t~~G~i~e~~i~~~~~~~~~~k~v~~l~~~~ 165 (936)
|.+..|..+. ++...+ +...-+..-|+|.+.+ +-|+- .-+-.|+.+.+..+ +..+.+ .- .
T Consensus 187 G~VtlwDv~g~sp~~~~~-~~HsAP~~gicfspsn-------e~l~vsVG~Dkki~~yD~~s~----~s~~~l-~y---~ 250 (673)
T KOG4378|consen 187 GAVTLWDVQGMSPIFHAS-EAHSAPCRGICFSPSN-------EALLVSVGYDKKINIYDIRSQ----ASTDRL-TY---S 250 (673)
T ss_pred CeEEEEeccCCCcccchh-hhccCCcCcceecCCc-------cceEEEecccceEEEeecccc----ccccee-ee---c
Confidence 8887665433 333223 2334577778888543 33332 34555777766543 333433 11 2
Q ss_pred CceeeEEEEeeccCCCceEEEEEECCCeEEEEec
Q 002318 166 EAFMGLQMETASLSNGTRYYVMAVTPTRLYSFTG 199 (936)
Q Consensus 166 ~~I~gi~~~~~~~~~~~~~~i~ast~~rly~f~~ 199 (936)
.|.+.+.+.. +..+++..+...++|+++=
T Consensus 251 ~Plstvaf~~-----~G~~L~aG~s~G~~i~YD~ 279 (673)
T KOG4378|consen 251 HPLSTVAFSE-----CGTYLCAGNSKGELIAYDM 279 (673)
T ss_pred CCcceeeecC-----CceEEEeecCCceEEEEec
Confidence 5688888852 1234444445789997753
No 216
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=74.96 E-value=32 Score=41.33 Aligned_cols=155 Identities=14% Similarity=0.107 Sum_probs=86.8
Q ss_pred CCceeEEEEeCC--EEEEEecCCeEEEEeC-CCCCceeeEcCCCCCCccceeEEEeCCCCCeEEEEeecCCCccEEEEec
Q 002318 21 RGVITCMSAGND--VIVLGTSKGWLIRHDF-GAGDSYDIDLSAGRPGEQSIHKVFVDPGGSHCIATIVGSGGAETFYTHA 97 (936)
Q Consensus 21 ~~~i~~l~v~~n--~l~l~~~~g~l~ridl-~~~~~~~~~l~~~~~~~~~i~~i~lDp~G~hlli~~~~~~~g~~~Y~~~ 97 (936)
++-|+++++..+ .|+-+.+++.+-.++| ...-+..... ....+|..+-+||+| +++.+.. .+|.+-.++.
T Consensus 62 ~d~ita~~l~~d~~~L~~a~rs~llrv~~L~tgk~irswKa----~He~Pvi~ma~~~~g-~LlAtgg--aD~~v~VWdi 134 (775)
T KOG0319|consen 62 EDEITALALTPDEEVLVTASRSQLLRVWSLPTGKLIRSWKA----IHEAPVITMAFDPTG-TLLATGG--ADGRVKVWDI 134 (775)
T ss_pred hhhhheeeecCCccEEEEeeccceEEEEEcccchHhHhHhh----ccCCCeEEEEEcCCC-ceEEecc--ccceEEEEEe
Confidence 345888888765 3444444544444477 3332332222 125789999999999 5544432 2677766655
Q ss_pred CCCCce-eccCCCCceEEEEEecCCCCCCCCcceEEEEcCCCcEEEEEEecCCcccceeeEEeeeCCCCCceeeEEEEee
Q 002318 98 KWSKPR-VLSKLKGLVVNAVAWNRQQITEASTKEIILGTDTGQLHEMAVDEKDKREKYIKLLFELNELPEAFMGLQMETA 176 (936)
Q Consensus 98 ~~~k~k-~L~klkg~~I~sVaw~~~~~~~~st~~iLiGt~~G~i~e~~i~~~~~~~~~~k~v~~l~~~~~~I~gi~~~~~ 176 (936)
.....- .+.- .|-.|.++.|++.. ...-+.-|..+|.++-..+... + .+-.+..... +.|+|+.+..
T Consensus 135 ~~~~~th~fkG-~gGvVssl~F~~~~----~~~lL~sg~~D~~v~vwnl~~~-~---tcl~~~~~H~--S~vtsL~~~~- 202 (775)
T KOG0319|consen 135 KNGYCTHSFKG-HGGVVSSLLFHPHW----NRWLLASGATDGTVRVWNLNDK-R---TCLHTMILHK--SAVTSLAFSE- 202 (775)
T ss_pred eCCEEEEEecC-CCceEEEEEeCCcc----chhheeecCCCceEEEEEcccC-c---hHHHHHHhhh--hheeeeeecc-
Confidence 444322 2322 23489999999543 2245666888999998888643 1 1111112222 5699999863
Q ss_pred ccCCCceEEEEEECCCeEEEEe
Q 002318 177 SLSNGTRYYVMAVTPTRLYSFT 198 (936)
Q Consensus 177 ~~~~~~~~~i~ast~~rly~f~ 198 (936)
+..-++-++-+.-++-|.
T Consensus 203 ----d~~~~ls~~RDkvi~vwd 220 (775)
T KOG0319|consen 203 ----DSLELLSVGRDKVIIVWD 220 (775)
T ss_pred ----CCceEEEeccCcEEEEee
Confidence 223333333355555554
No 217
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=74.80 E-value=69 Score=39.09 Aligned_cols=166 Identities=13% Similarity=0.093 Sum_probs=102.9
Q ss_pred CceeEEEEeCCEE-EEEecCCeEEEEeC-CCCCceeeEcCCCCCCccceeEEEeCCCCCeEEEE-eecCCCccEEEEecC
Q 002318 22 GVITCMSAGNDVI-VLGTSKGWLIRHDF-GAGDSYDIDLSAGRPGEQSIHKVFVDPGGSHCIAT-IVGSGGAETFYTHAK 98 (936)
Q Consensus 22 ~~i~~l~v~~n~l-~l~~~~g~l~ridl-~~~~~~~~~l~~~~~~~~~i~~i~lDp~G~hlli~-~~~~~~g~~~Y~~~~ 98 (936)
+-|..+.-+.|.+ .=+--+.++-.|++ ..+-..-| .| ..-|+.|-+.|.-..-+|+ +- ||.+--|+..
T Consensus 370 ~DILDlSWSKn~fLLSSSMDKTVRLWh~~~~~CL~~F-~H-----ndfVTcVaFnPvDDryFiSGSL---D~KvRiWsI~ 440 (712)
T KOG0283|consen 370 ADILDLSWSKNNFLLSSSMDKTVRLWHPGRKECLKVF-SH-----NDFVTCVAFNPVDDRYFISGSL---DGKVRLWSIS 440 (712)
T ss_pred hhheecccccCCeeEeccccccEEeecCCCcceeeEE-ec-----CCeeEEEEecccCCCcEeeccc---ccceEEeecC
Confidence 3466777665544 44445667888888 33333322 23 2578999999986665555 44 7888888887
Q ss_pred CCCceeccCCCCceEEEEEecCCCCCCCCcceEEEEcCCCcEEEEEEecCCcccceeeEE-eeeCC----CCCceeeEEE
Q 002318 99 WSKPRVLSKLKGLVVNAVAWNRQQITEASTKEIILGTDTGQLHEMAVDEKDKREKYIKLL-FELNE----LPEAFMGLQM 173 (936)
Q Consensus 99 ~~k~k~L~klkg~~I~sVaw~~~~~~~~st~~iLiGt~~G~i~e~~i~~~~~~~~~~k~v-~~l~~----~~~~I~gi~~ 173 (936)
-.++-.=..++ -.|++|++.|+ .+-.||||-+|....+..... ++.... ..+.. ....|||+++
T Consensus 441 d~~Vv~W~Dl~-~lITAvcy~Pd------Gk~avIGt~~G~C~fY~t~~l----k~~~~~~I~~~~~Kk~~~~rITG~Q~ 509 (712)
T KOG0283|consen 441 DKKVVDWNDLR-DLITAVCYSPD------GKGAVIGTFNGYCRFYDTEGL----KLVSDFHIRLHNKKKKQGKRITGLQF 509 (712)
T ss_pred cCeeEeehhhh-hhheeEEeccC------CceEEEEEeccEEEEEEccCC----eEEEeeeEeeccCccccCceeeeeEe
Confidence 77766656665 48999999954 347999999999998887654 111111 11211 1235999999
Q ss_pred EeeccCCCceEEEEEECCCeEEEEecCC-chHHHHhhhh
Q 002318 174 ETASLSNGTRYYVMAVTPTRLYSFTGFG-SLDTVFASYL 211 (936)
Q Consensus 174 ~~~~~~~~~~~~i~ast~~rly~f~~~~-~l~~~f~~~~ 211 (936)
.. ++..-+++.|.+.|+--|.|.. .+...|..+.
T Consensus 510 ~p----~~~~~vLVTSnDSrIRI~d~~~~~lv~KfKG~~ 544 (712)
T KOG0283|consen 510 FP----GDPDEVLVTSNDSRIRIYDGRDKDLVHKFKGFR 544 (712)
T ss_pred cC----CCCCeEEEecCCCceEEEeccchhhhhhhcccc
Confidence 74 2222344434467777666632 2444555443
No 218
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=74.79 E-value=1.4e+02 Score=34.68 Aligned_cols=69 Identities=17% Similarity=0.136 Sum_probs=42.8
Q ss_pred CceeEEEEeCC-EEEEEecCCeEEEEeCCCCCceeeEcCCCCC----CccceeEEEeCCCCCeEEEEeecCCCccEEEEe
Q 002318 22 GVITCMSAGND-VIVLGTSKGWLIRHDFGAGDSYDIDLSAGRP----GEQSIHKVFVDPGGSHCIATIVGSGGAETFYTH 96 (936)
Q Consensus 22 ~~i~~l~v~~n-~l~l~~~~g~l~ridl~~~~~~~~~l~~~~~----~~~~i~~i~lDp~G~hlli~~~~~~~g~~~Y~~ 96 (936)
+.|.+|...++ .|++.+.+|++.++|+.++. ++.++.... .+.+|-.++.-.+| ++|.|. ++..|++.
T Consensus 81 ~~iv~~~wt~~e~LvvV~~dG~v~vy~~~G~~--~fsl~~~i~~~~v~e~~i~~~~~~~~G--ivvLt~---~~~~~~v~ 153 (410)
T PF04841_consen 81 GRIVGMGWTDDEELVVVQSDGTVRVYDLFGEF--QFSLGEEIEEEKVLECRIFAIWFYKNG--IVVLTG---NNRFYVVN 153 (410)
T ss_pred CCEEEEEECCCCeEEEEEcCCEEEEEeCCCce--eechhhhccccCcccccccccccCCCC--EEEECC---CCeEEEEe
Confidence 57888888555 78889999999999994443 344332211 12344444555577 445555 57776665
Q ss_pred c
Q 002318 97 A 97 (936)
Q Consensus 97 ~ 97 (936)
.
T Consensus 154 n 154 (410)
T PF04841_consen 154 N 154 (410)
T ss_pred C
Confidence 4
No 219
>PF14763 HPS3_C: Hermansky-Pudlak syndrome 3, C-terminal
Probab=74.33 E-value=13 Score=40.12 Aligned_cols=93 Identities=12% Similarity=0.196 Sum_probs=61.8
Q ss_pred hhccccHHHHHHHHHhcCHHHHHHHhhccCCCHHHHHHHHHHHHHHHhhcccCC-C-----hHhHHHHHHHHHhcCCccc
Q 002318 694 YGMMSMHEEAVALALQVDPELAMAEADKVEDDEDLRKKLWLMVAKHVIEQEKGT-K-----RENIRKAIAFLKETDGLLK 767 (936)
Q Consensus 694 ~~~~g~~~eAl~l~l~~di~lA~~~a~~~~~d~~~~kkLWl~ll~~~i~~~~~~-~-----~~~i~~~l~~L~~~~~~L~ 767 (936)
..|+|.||+|++.+++.=.+.++.||+..-. ++.+.-.|.+++--+-+.-.-. . -+.+++++.++ ...+.
T Consensus 247 ~trL~~~E~sId~LLdrCPqAVV~YA~helk-~e~~~lWWkkLLpELc~rir~~~~~~~l~ls~LKEtLsvv---A~eLe 322 (353)
T PF14763_consen 247 ITRLGEYEKSIDKLLDRCPQAVVPYANHELK-EEHQELWWKKLLPELCDRIRCGGDRQELLLSSLKETLSVV---AMELE 322 (353)
T ss_pred hhhhccHHHHHHHHHHhCcHHHHHHhhhhcc-cchHHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHh---hccCC
Confidence 3688999999999999878888999955421 1233446888887666543211 0 12244444444 23578
Q ss_pred cccccCcCCCCcchhHHHHHHHH
Q 002318 768 IEDILPFFPDFALIDDFKEAICS 790 (936)
Q Consensus 768 i~diL~~~p~~~~I~~~Kd~I~~ 790 (936)
..|.|..+|++-+..-|=.++..
T Consensus 323 ~~dFLnlLPeDGtAaFFLPyLl~ 345 (353)
T PF14763_consen 323 LRDFLNLLPEDGTAAFFLPYLLY 345 (353)
T ss_pred HHHHHhhCCCccchHHHHHHHHH
Confidence 88999999998887777665543
No 220
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=74.01 E-value=4.7 Score=48.65 Aligned_cols=20 Identities=25% Similarity=0.655 Sum_probs=16.8
Q ss_pred CEEEEcCCChhHHHhHHHHH
Q 002318 864 PFYVFPCGHAFHAQCLIAHV 883 (936)
Q Consensus 864 ~fvvFpCgH~fH~~CL~~~~ 883 (936)
..|+-.|||+|...|+...+
T Consensus 655 d~vI~kC~H~FC~~Cvq~r~ 674 (698)
T KOG0978|consen 655 DAVITKCGHVFCEECVQTRY 674 (698)
T ss_pred hHHHHhcchHHHHHHHHHHH
Confidence 45667899999999998765
No 221
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=73.81 E-value=85 Score=39.25 Aligned_cols=104 Identities=13% Similarity=0.038 Sum_probs=66.2
Q ss_pred CCEEEEEecCCeEEEEeC--CCCCceeeEcCCCCCCccceeEEEeCCCCCeEEEEeecCCCccEEEEecCCCCceeccCC
Q 002318 31 NDVIVLGTSKGWLIRHDF--GAGDSYDIDLSAGRPGEQSIHKVFVDPGGSHCIATIVGSGGAETFYTHAKWSKPRVLSKL 108 (936)
Q Consensus 31 ~n~l~l~~~~g~l~ridl--~~~~~~~~~l~~~~~~~~~i~~i~lDp~G~hlli~~~~~~~g~~~Y~~~~~~k~k~L~kl 108 (936)
+..-++|+.++.|+|||. .++.+..-+...... ......+-.+..| |+.|.+. .|+.=..+.-..++|.+-.-
T Consensus 542 ~e~tflGls~n~lfriDpR~~~~k~v~~~~k~Y~~-~~~Fs~~aTt~~G-~iavgs~---~G~IRLyd~~g~~AKT~lp~ 616 (794)
T PF08553_consen 542 NEQTFLGLSDNSLFRIDPRLSGNKLVDSQSKQYSS-KNNFSCFATTEDG-YIAVGSN---KGDIRLYDRLGKRAKTALPG 616 (794)
T ss_pred CCceEEEECCCceEEeccCCCCCceeecccccccc-CCCceEEEecCCc-eEEEEeC---CCcEEeecccchhhhhcCCC
Confidence 446699999999999999 344333222222211 3466777778888 5677776 78875545433456663322
Q ss_pred CCceEEEEEecCCCCCCCCcceEEEEcCCC--cEEEEEEe
Q 002318 109 KGLVVNAVAWNRQQITEASTKEIILGTDTG--QLHEMAVD 146 (936)
Q Consensus 109 kg~~I~sVaw~~~~~~~~st~~iLiGt~~G--~i~e~~i~ 146 (936)
-|-+|+.|.-.. -|.-|+||-+- .|+.+.+.
T Consensus 617 lG~pI~~iDvt~-------DGkwilaTc~tyLlLi~t~~~ 649 (794)
T PF08553_consen 617 LGDPIIGIDVTA-------DGKWILATCKTYLLLIDTLIK 649 (794)
T ss_pred CCCCeeEEEecC-------CCcEEEEeecceEEEEEEeee
Confidence 478999998872 36888998774 34444443
No 222
>COG4847 Uncharacterized protein conserved in archaea [Function unknown]
Probab=73.49 E-value=4.4 Score=35.49 Aligned_cols=39 Identities=21% Similarity=0.351 Sum_probs=29.2
Q ss_pred cccccccchhhhhcccccccccccCCCCCCCCEEEEcCCChhHHHhHHHHHhhcCC
Q 002318 833 DEDCGVCRRKILVAGRDYRMARGYASVGPMAPFYVFPCGHAFHAQCLIAHVTQCTN 888 (936)
Q Consensus 833 ~~~C~~C~k~L~~~~~~~~~~~~~~~~~~~~~fvvFpCgH~fH~~CL~~~~~~~~~ 888 (936)
.-+|.+||.++.. . ..|-..+ .-+.|.+|+.....+-.+
T Consensus 6 ewkC~VCg~~iie-----G-----------qkFTF~~-kGsVH~eCl~~s~~~k~~ 44 (103)
T COG4847 6 EWKCYVCGGTIIE-----G-----------QKFTFTK-KGSVHYECLAESKRKKPG 44 (103)
T ss_pred eeeEeeeCCEeee-----c-----------cEEEEee-CCcchHHHHHHHHhcCcC
Confidence 3579999999887 2 1566666 889999999987655444
No 223
>KOG0802 consensus E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=73.36 E-value=2.1 Score=51.51 Aligned_cols=40 Identities=30% Similarity=0.638 Sum_probs=30.4
Q ss_pred ccccccccchhhhhcccccccccccCCCCCCCCEEEEcCCChhHHHhHHHHHhh
Q 002318 832 RDEDCGVCRRKILVAGRDYRMARGYASVGPMAPFYVFPCGHAFHAQCLIAHVTQ 885 (936)
Q Consensus 832 ~~~~C~~C~k~L~~~~~~~~~~~~~~~~~~~~~fvvFpCgH~fH~~CL~~~~~~ 885 (936)
....|.+|...+....- ..--.-||||.||..||.+....
T Consensus 290 ~~~~C~IC~e~l~~~~~--------------~~~~rL~C~Hifh~~CL~~W~er 329 (543)
T KOG0802|consen 290 SDELCIICLEELHSGHN--------------ITPKRLPCGHIFHDSCLRSWFER 329 (543)
T ss_pred cCCeeeeechhhccccc--------------cccceeecccchHHHHHHHHHHH
Confidence 36789999999987210 12456799999999999987643
No 224
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=73.33 E-value=47 Score=39.77 Aligned_cols=121 Identities=10% Similarity=0.089 Sum_probs=75.9
Q ss_pred hhHHHHHhhcCCCceeEEEEeCC-EEEEEecCCeEEEEeCCCCCceeeEcCCCCCCccceeEEEeCCCCCeEEEEeecCC
Q 002318 10 VDVLERYAAKGRGVITCMSAGND-VIVLGTSKGWLIRHDFGAGDSYDIDLSAGRPGEQSIHKVFVDPGGSHCIATIVGSG 88 (936)
Q Consensus 10 ~~~~~~~~~~~~~~i~~l~v~~n-~l~l~~~~g~l~ridl~~~~~~~~~l~~~~~~~~~i~~i~lDp~G~hlli~~~~~~ 88 (936)
=++..+.|.--.|-+..++|-++ -+.=.-..|.|.+||+.++.+.+..-+ ..-|..|-+-+.+.+++.|..
T Consensus 168 ~~~~l~tf~gHtD~VRgL~vl~~~~flScsNDg~Ir~w~~~ge~l~~~~gh-----tn~vYsis~~~~~~~Ivs~gE--- 239 (745)
T KOG0301|consen 168 GGTLLKTFSGHTDCVRGLAVLDDSHFLSCSNDGSIRLWDLDGEVLLEMHGH-----TNFVYSISMALSDGLIVSTGE--- 239 (745)
T ss_pred CCchhhhhccchhheeeeEEecCCCeEeecCCceEEEEeccCceeeeeecc-----ceEEEEEEecCCCCeEEEecC---
Confidence 35566666655666788888887 444445679999999966666665544 345666666667777777766
Q ss_pred CccEEEEecCCCCceeccCCCCceEEEEEecCCCCCCCCcceEEEEcCCCcEEEEEEec
Q 002318 89 GAETFYTHAKWSKPRVLSKLKGLVVNAVAWNRQQITEASTKEIILGTDTGQLHEMAVDE 147 (936)
Q Consensus 89 ~g~~~Y~~~~~~k~k~L~klkg~~I~sVaw~~~~~~~~st~~iLiGt~~G~i~e~~i~~ 147 (936)
|+..-.+.... ..+...+ +-+| .|+- .-..+|.|++|++||.|+-...+.
T Consensus 240 DrtlriW~~~e--~~q~I~l---Ptts-iWsa---~~L~NgDIvvg~SDG~VrVfT~~k 289 (745)
T KOG0301|consen 240 DRTLRIWKKDE--CVQVITL---PTTS-IWSA---KVLLNGDIVVGGSDGRVRVFTVDK 289 (745)
T ss_pred CceEEEeecCc--eEEEEec---Cccc-eEEE---EEeeCCCEEEeccCceEEEEEecc
Confidence 77775554431 1111111 2222 2441 122467999999999999887763
No 225
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=73.33 E-value=21 Score=38.50 Aligned_cols=143 Identities=8% Similarity=0.109 Sum_probs=81.5
Q ss_pred HHHHhhcCCCceeEEEEeCC--EEEEEecCCeEEEEeC-CCCCceeeEcCCCCCCccceeEEEeCCCCCeEEEEeecCCC
Q 002318 13 LERYAAKGRGVITCMSAGND--VIVLGTSKGWLIRHDF-GAGDSYDIDLSAGRPGEQSIHKVFVDPGGSHCIATIVGSGG 89 (936)
Q Consensus 13 ~~~~~~~~~~~i~~l~v~~n--~l~l~~~~g~l~ridl-~~~~~~~~~l~~~~~~~~~i~~i~lDp~G~hlli~~~~~~~ 89 (936)
|.|.+-.--|.|+++..+.+ +|.=|..+++|-.+|. .|.--.-+..- +....|..|...|+|++++|.|++. .
T Consensus 164 vIRTlYDH~devn~l~FHPre~ILiS~srD~tvKlFDfsK~saKrA~K~~---qd~~~vrsiSfHPsGefllvgTdHp-~ 239 (430)
T KOG0640|consen 164 VIRTLYDHVDEVNDLDFHPRETILISGSRDNTVKLFDFSKTSAKRAFKVF---QDTEPVRSISFHPSGEFLLVGTDHP-T 239 (430)
T ss_pred eEeehhhccCcccceeecchhheEEeccCCCeEEEEecccHHHHHHHHHh---hccceeeeEeecCCCceEEEecCCC-c
Confidence 33444344466889998876 6777788899999999 55432111111 2246899999999999999999832 1
Q ss_pred ccEEEEe----c-CCCCceeccCCCCceEEEEEecCCCCCCCCcc-eEEEEcCCCcEEEEEEecCCcccceeeEEeeeCC
Q 002318 90 AETFYTH----A-KWSKPRVLSKLKGLVVNAVAWNRQQITEASTK-EIILGTDTGQLHEMAVDEKDKREKYIKLLFELNE 163 (936)
Q Consensus 90 g~~~Y~~----~-~~~k~k~L~klkg~~I~sVaw~~~~~~~~st~-~iLiGt~~G~i~e~~i~~~~~~~~~~k~v~~l~~ 163 (936)
--.|=++ . +.+ +..-. + -.|++|-.+ +|+ -.+.|+++|.|=.. ++- .-+.++.+-+-.+
T Consensus 240 ~rlYdv~T~Qcfvsan-Pd~qh--t-~ai~~V~Ys-------~t~~lYvTaSkDG~Iklw--DGV--S~rCv~t~~~AH~ 304 (430)
T KOG0640|consen 240 LRLYDVNTYQCFVSAN-PDDQH--T-GAITQVRYS-------STGSLYVTASKDGAIKLW--DGV--SNRCVRTIGNAHG 304 (430)
T ss_pred eeEEeccceeEeeecC-ccccc--c-cceeEEEec-------CCccEEEEeccCCcEEee--ccc--cHHHHHHHHhhcC
Confidence 1122111 1 111 11111 1 278888887 233 45668888976432 211 1122222222333
Q ss_pred CCCceeeEEEEe
Q 002318 164 LPEAFMGLQMET 175 (936)
Q Consensus 164 ~~~~I~gi~~~~ 175 (936)
+ ..|++..|.+
T Consensus 305 g-sevcSa~Ftk 315 (430)
T KOG0640|consen 305 G-SEVCSAVFTK 315 (430)
T ss_pred C-ceeeeEEEcc
Confidence 2 4588888874
No 226
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=73.30 E-value=65 Score=34.41 Aligned_cols=139 Identities=10% Similarity=0.068 Sum_probs=85.6
Q ss_pred CCceeEEEEeCC---EEEEEecCCeEEEEeC-CCCCceeeEcCCCCCCccceeEEEeCCCCCeEEEEeecCCCccEEEEe
Q 002318 21 RGVITCMSAGND---VIVLGTSKGWLIRHDF-GAGDSYDIDLSAGRPGEQSIHKVFVDPGGSHCIATIVGSGGAETFYTH 96 (936)
Q Consensus 21 ~~~i~~l~v~~n---~l~l~~~~g~l~ridl-~~~~~~~~~l~~~~~~~~~i~~i~lDp~G~hlli~~~~~~~g~~~Y~~ 96 (936)
.+.+=.+|++.. +++-+-.+..|-.++. .++...=..+- ..+-.-.|+.+--.|.|+.|...+= ++.+--++
T Consensus 14 ~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~s~~ck~vl-d~~hkrsVRsvAwsp~g~~La~aSF---D~t~~Iw~ 89 (312)
T KOG0645|consen 14 KDRVWSVAWHPGKGVILASCGTDKAVRIWSTSSGDSWTCKTVL-DDGHKRSVRSVAWSPHGRYLASASF---DATVVIWK 89 (312)
T ss_pred CCcEEEEEeccCCceEEEeecCCceEEEEecCCCCcEEEEEec-cccchheeeeeeecCCCcEEEEeec---cceEEEee
Confidence 456888899888 6777777777877788 45554322111 1111357999999999996555544 56665555
Q ss_pred cCCCCceeccCCCCc--eEEEEEecCCCCCCCCcceEEEE-cCCCcEEEEEEecCCcccceeeEEeeeCCCCCceeeEEE
Q 002318 97 AKWSKPRVLSKLKGL--VVNAVAWNRQQITEASTKEIILG-TDTGQLHEMAVDEKDKREKYIKLLFELNELPEAFMGLQM 173 (936)
Q Consensus 97 ~~~~k~k~L~klkg~--~I~sVaw~~~~~~~~st~~iLiG-t~~G~i~e~~i~~~~~~~~~~k~v~~l~~~~~~I~gi~~ 173 (936)
.....+.-+..+.|+ .|+||||++ .|.+|-- +.+-.+..-+++.. .|-.+--|.+-.. .-|-.+.|
T Consensus 90 k~~~efecv~~lEGHEnEVK~Vaws~-------sG~~LATCSRDKSVWiWe~ded--dEfec~aVL~~Ht--qDVK~V~W 158 (312)
T KOG0645|consen 90 KEDGEFECVATLEGHENEVKCVAWSA-------SGNYLATCSRDKSVWIWEIDED--DEFECIAVLQEHT--QDVKHVIW 158 (312)
T ss_pred cCCCceeEEeeeeccccceeEEEEcC-------CCCEEEEeeCCCeEEEEEecCC--CcEEEEeeecccc--ccccEEEE
Confidence 544455667777785 899999993 3466655 44566777777643 2322333333222 22666777
Q ss_pred E
Q 002318 174 E 174 (936)
Q Consensus 174 ~ 174 (936)
.
T Consensus 159 H 159 (312)
T KOG0645|consen 159 H 159 (312)
T ss_pred c
Confidence 6
No 227
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=73.26 E-value=9.1 Score=44.69 Aligned_cols=113 Identities=18% Similarity=0.234 Sum_probs=71.9
Q ss_pred HHHhhcCCCceeEEEEeCC--EEEEEecCCeEEEEeC-CCCCceeeEcCCCCCCccceeEEEeCCCCCeEEEEeecCCCc
Q 002318 14 ERYAAKGRGVITCMSAGND--VIVLGTSKGWLIRHDF-GAGDSYDIDLSAGRPGEQSIHKVFVDPGGSHCIATIVGSGGA 90 (936)
Q Consensus 14 ~~~~~~~~~~i~~l~v~~n--~l~l~~~~g~l~ridl-~~~~~~~~~l~~~~~~~~~i~~i~lDp~G~hlli~~~~~~~g 90 (936)
+-.|.+..+.+.++..+.- .|+++|.+ .|-.+|| ...-|.+. ++ +.--|..+.++|.|.++|+.+. ++
T Consensus 559 Q~PF~kskG~vq~v~FHPs~p~lfVaTq~-~vRiYdL~kqelvKkL-~t----g~kwiS~msihp~GDnli~gs~---d~ 629 (733)
T KOG0650|consen 559 QSPFRKSKGLVQRVKFHPSKPYLFVATQR-SVRIYDLSKQELVKKL-LT----GSKWISSMSIHPNGDNLILGSY---DK 629 (733)
T ss_pred cCchhhcCCceeEEEecCCCceEEEEecc-ceEEEehhHHHHHHHH-hc----CCeeeeeeeecCCCCeEEEecC---CC
Confidence 3445567788888888876 55666666 6667799 53333322 22 1246788999999999999988 67
Q ss_pred cEEEEec-CCCCceeccCCCCceEEEEEecCCCCCCCCcceEEEEcCCCcEE
Q 002318 91 ETFYTHA-KWSKPRVLSKLKGLVVNAVAWNRQQITEASTKEIILGTDTGQLH 141 (936)
Q Consensus 91 ~~~Y~~~-~~~k~k~L~klkg~~I~sVaw~~~~~~~~st~~iLiGt~~G~i~ 141 (936)
....... -++|+..-.++.-..+++||+.+.. + =|-.|..+|.++
T Consensus 630 k~~WfDldlsskPyk~lr~H~~avr~Va~H~ry-P-----Lfas~sdDgtv~ 675 (733)
T KOG0650|consen 630 KMCWFDLDLSSKPYKTLRLHEKAVRSVAFHKRY-P-----LFASGSDDGTVI 675 (733)
T ss_pred eeEEEEcccCcchhHHhhhhhhhhhhhhhcccc-c-----eeeeecCCCcEE
Confidence 6654443 3334444334455689999999543 1 233455556544
No 228
>PRK00178 tolB translocation protein TolB; Provisional
Probab=72.96 E-value=1.4e+02 Score=34.63 Aligned_cols=145 Identities=12% Similarity=0.188 Sum_probs=79.7
Q ss_pred EeCCEEEEEecCC------eEEEEeCCCCCceeeEcCCCCCCccceeEEEeCCCCCeEEEEeecCCCccEEEEecCCCCc
Q 002318 29 AGNDVIVLGTSKG------WLIRHDFGAGDSYDIDLSAGRPGEQSIHKVFVDPGGSHCIATIVGSGGAETFYTHAKWSKP 102 (936)
Q Consensus 29 v~~n~l~l~~~~g------~l~ridl~~~~~~~~~l~~~~~~~~~i~~i~lDp~G~hlli~~~~~~~g~~~Y~~~~~~k~ 102 (936)
...++.|+....+ .|+.+|.+..+...+--. ...+......|.|.+++..+...+....|.++....+.
T Consensus 161 f~~~ia~v~~~~~~~~~~~~l~~~d~~g~~~~~l~~~-----~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~ 235 (430)
T PRK00178 161 FSTRILYVTAERFSVNTRYTLQRSDYDGARAVTLLQS-----REPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRR 235 (430)
T ss_pred ceeeEEEEEeeCCCCCcceEEEEECCCCCCceEEecC-----CCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCE
Confidence 4555666654332 366668744433322211 34567778889999988766521223455566666667
Q ss_pred eeccCCCCceEEEEEecCCCCCCCCcceEEEEc-CCC--cEEEEEEecCCcccceeeEEeeeCCCCCceeeEEEEeeccC
Q 002318 103 RVLSKLKGLVVNAVAWNRQQITEASTKEIILGT-DTG--QLHEMAVDEKDKREKYIKLLFELNELPEAFMGLQMETASLS 179 (936)
Q Consensus 103 k~L~klkg~~I~sVaw~~~~~~~~st~~iLiGt-~~G--~i~e~~i~~~~~~~~~~k~v~~l~~~~~~I~gi~~~~~~~~ 179 (936)
+.+...+|. +.+.+|.++ ...+++.. .+| .||...+..+ ..+.+..- ++..++..|.
T Consensus 236 ~~l~~~~g~-~~~~~~SpD------G~~la~~~~~~g~~~Iy~~d~~~~-----~~~~lt~~---~~~~~~~~~s----- 295 (430)
T PRK00178 236 EQITNFEGL-NGAPAWSPD------GSKLAFVLSKDGNPEIYVMDLASR-----QLSRVTNH---PAIDTEPFWG----- 295 (430)
T ss_pred EEccCCCCC-cCCeEECCC------CCEEEEEEccCCCceEEEEECCCC-----CeEEcccC---CCCcCCeEEC-----
Confidence 778877764 457899843 23566543 344 5777666543 13333221 1234455554
Q ss_pred CCceEEEEEEC---CCeEEEEe
Q 002318 180 NGTRYYVMAVT---PTRLYSFT 198 (936)
Q Consensus 180 ~~~~~~i~ast---~~rly~f~ 198 (936)
.+.+.+++++. ...+|.+.
T Consensus 296 pDg~~i~f~s~~~g~~~iy~~d 317 (430)
T PRK00178 296 KDGRTLYFTSDRGGKPQIYKVN 317 (430)
T ss_pred CCCCEEEEEECCCCCceEEEEE
Confidence 22356666554 23577553
No 229
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=72.87 E-value=78 Score=33.89 Aligned_cols=150 Identities=14% Similarity=0.167 Sum_probs=74.9
Q ss_pred EeCCEEEEEec-CCeEEEEeC-CC-CC-----ceeeEcCCCCCCccceeEEEeCCCCCeEEEEeecCCCcc-EEEEec--
Q 002318 29 AGNDVIVLGTS-KGWLIRHDF-GA-GD-----SYDIDLSAGRPGEQSIHKVFVDPGGSHCIATIVGSGGAE-TFYTHA-- 97 (936)
Q Consensus 29 v~~n~l~l~~~-~g~l~ridl-~~-~~-----~~~~~l~~~~~~~~~i~~i~lDp~G~hlli~~~~~~~g~-~~Y~~~-- 97 (936)
+.++.+++.-. .+.|+.+++ .. .. +..+++.....+..-+..+.-||.+..+++.-.. +.. .|-+..
T Consensus 73 ~g~~~~vl~~Er~~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~--~P~~l~~~~~~~ 150 (248)
T PF06977_consen 73 LGNGRYVLSEERDQRLYIFTIDDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKER--KPKRLYEVNGFP 150 (248)
T ss_dssp -STTEEEEEETTTTEEEEEEE----TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEES--SSEEEEEEESTT
T ss_pred ECCCEEEEEEcCCCcEEEEEEeccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCC--CChhhEEEcccc
Confidence 35567777663 788999988 22 21 2344544332233458999999999998887662 233 333433
Q ss_pred CCCCce-----ec--cCCCCceEEEEEecCCCCCCCCcceEEEEc-CCCcEEEEEEecCCcccceeeEEeeeCCCC----
Q 002318 98 KWSKPR-----VL--SKLKGLVVNAVAWNRQQITEASTKEIILGT-DTGQLHEMAVDEKDKREKYIKLLFELNELP---- 165 (936)
Q Consensus 98 ~~~k~k-----~L--~klkg~~I~sVaw~~~~~~~~st~~iLiGt-~~G~i~e~~i~~~~~~~~~~k~v~~l~~~~---- 165 (936)
...... .+ .++.-..+.++++++. |+.++|=+ ....|++...+++ ++..+.|....
T Consensus 151 ~~~~~~~~~~~~~~~~~~~~~d~S~l~~~p~------t~~lliLS~es~~l~~~d~~G~------~~~~~~L~~g~~gl~ 218 (248)
T PF06977_consen 151 GGFDLFVSDDQDLDDDKLFVRDLSGLSYDPR------TGHLLILSDESRLLLELDRQGR------VVSSLSLDRGFHGLS 218 (248)
T ss_dssp -SS--EEEE-HHHH-HT--SS---EEEEETT------TTEEEEEETTTTEEEEE-TT--------EEEEEE-STTGGG-S
T ss_pred CccceeeccccccccccceeccccceEEcCC------CCeEEEEECCCCeEEEECCCCC------EEEEEEeCCcccCcc
Confidence 111110 01 1233357889998832 44555544 4566767653332 44445665310
Q ss_pred ---CceeeEEEEeeccCCCceEEEEEECCCeEEEEe
Q 002318 166 ---EAFMGLQMETASLSNGTRYYVMAVTPTRLYSFT 198 (936)
Q Consensus 166 ---~~I~gi~~~~~~~~~~~~~~i~ast~~rly~f~ 198 (936)
..-.||.+.. .+-+.+++-|.++|.|.
T Consensus 219 ~~~~QpEGIa~d~------~G~LYIvsEpNlfy~f~ 248 (248)
T PF06977_consen 219 KDIPQPEGIAFDP------DGNLYIVSEPNLFYRFE 248 (248)
T ss_dssp S---SEEEEEE-T------T--EEEEETTTEEEEEE
T ss_pred cccCCccEEEECC------CCCEEEEcCCceEEEeC
Confidence 1357888873 24677778999999883
No 230
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=72.15 E-value=18 Score=35.12 Aligned_cols=79 Identities=11% Similarity=0.075 Sum_probs=51.6
Q ss_pred HHHchhhHHHHHHhcCC----hhhHHHHHHHHHHHHHhcCCHHHHHHHHHHhcC-----CCChHHHHHHhcCcChHHHHH
Q 002318 370 VYLDMKEYAAALANCRD----PLQRDQVYLVQAEAAFATKDFHRAASFYAKINY-----ILSFEEITLKFISVSEQDALR 440 (936)
Q Consensus 370 ~ll~~~~f~~Al~~~~~----~~~~~~I~~~~~~~L~~~g~y~~Aa~~y~~~~~-----~~~~E~v~lkFl~~~~~~~L~ 440 (936)
.+.++|+|++|+..++. ...-.......|.-+...|+|++|...|.+... ...+-....-+...++.+.-.
T Consensus 33 ~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~~~~a~~~lg~~l~~~g~~~eAi 112 (144)
T PRK15359 33 ASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDASHPEPVYQTGVCLKMMGEPGLAR 112 (144)
T ss_pred HHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHH
Confidence 47889999999988763 223456778889999999999999999998761 122233333344555554444
Q ss_pred HHHHHHhh
Q 002318 441 TFLLRKLD 448 (936)
Q Consensus 441 ~YL~~~l~ 448 (936)
.++..-+.
T Consensus 113 ~~~~~Al~ 120 (144)
T PRK15359 113 EAFQTAIK 120 (144)
T ss_pred HHHHHHHH
Confidence 44443333
No 231
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=71.81 E-value=73 Score=32.19 Aligned_cols=50 Identities=12% Similarity=0.094 Sum_probs=39.1
Q ss_pred HHHHchhhHHHHHHhcCCh----hhHHHHHHHHHHHHHhcCCHHHHHHHHHHhc
Q 002318 369 KVYLDMKEYAAALANCRDP----LQRDQVYLVQAEAAFATKDFHRAASFYAKIN 418 (936)
Q Consensus 369 ~~ll~~~~f~~Al~~~~~~----~~~~~I~~~~~~~L~~~g~y~~Aa~~y~~~~ 418 (936)
.++...|++++|+++.+.. ..-..+...+|..++..|+|++|.+.|.+..
T Consensus 73 ~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~ 126 (234)
T TIGR02521 73 LYYQQLGELEKAEDSFRRALTLNPNNGDVLNNYGTFLCQQGKYEQAMQQFEQAI 126 (234)
T ss_pred HHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 3577889999999886531 1223567788999999999999999999875
No 232
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=71.67 E-value=1.1e+02 Score=35.04 Aligned_cols=113 Identities=13% Similarity=0.110 Sum_probs=64.2
Q ss_pred ceeEEEEeC--CEEEEEec-C--CeEEEEeCCCCCceeeEcCCCCCCccceeEEEeCCCCCeEEEEeecCCCccEEEEec
Q 002318 23 VITCMSAGN--DVIVLGTS-K--GWLIRHDFGAGDSYDIDLSAGRPGEQSIHKVFVDPGGSHCIATIVGSGGAETFYTHA 97 (936)
Q Consensus 23 ~i~~l~v~~--n~l~l~~~-~--g~l~ridl~~~~~~~~~l~~~~~~~~~i~~i~lDp~G~hlli~~~~~~~g~~~Y~~~ 97 (936)
...+.+.+. +.+++... + ..|+.+|+......++... . .........|.|.+++++++..+....|.++.
T Consensus 235 ~~~~~~~spDg~~l~~~~~~~~~~~i~~~d~~~~~~~~l~~~--~---~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~ 309 (417)
T TIGR02800 235 MNGAPAFSPDGSKLAVSLSKDGNPDIYVMDLDGKQLTRLTNG--P---GIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDA 309 (417)
T ss_pred CccceEECCCCCEEEEEECCCCCccEEEEECCCCCEEECCCC--C---CCCCCEEECCCCCEEEEEECCCCCceEEEEEC
Confidence 344555554 35555442 2 3599999933333333211 1 12223455789999988876333346777776
Q ss_pred CCCCceeccCCCCceEEEEEecCCCCCCCCcceEEEEcCCC---cEEEEEEec
Q 002318 98 KWSKPRVLSKLKGLVVNAVAWNRQQITEASTKEIILGTDTG---QLHEMAVDE 147 (936)
Q Consensus 98 ~~~k~k~L~klkg~~I~sVaw~~~~~~~~st~~iLiGt~~G---~i~e~~i~~ 147 (936)
...+.+.+.. .+..+.+++|++. ...++.++.++ .|+.+.+..
T Consensus 310 ~~~~~~~l~~-~~~~~~~~~~spd------g~~i~~~~~~~~~~~i~~~d~~~ 355 (417)
T TIGR02800 310 DGGEVRRLTF-RGGYNASPSWSPD------GDLIAFVHREGGGFNIAVMDLDG 355 (417)
T ss_pred CCCCEEEeec-CCCCccCeEECCC------CCEEEEEEccCCceEEEEEeCCC
Confidence 6666666653 4556778889842 23566665554 566666543
No 233
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=71.55 E-value=53 Score=38.26 Aligned_cols=56 Identities=18% Similarity=0.277 Sum_probs=36.3
Q ss_pred CcceEEEEcCCCcEEEEEEecCCcccceeeEEeeeCCCCCceeeEEEEeeccCCCceEEEEEECCCeEE
Q 002318 127 STKEIILGTDTGQLHEMAVDEKDKREKYIKLLFELNELPEAFMGLQMETASLSNGTRYYVMAVTPTRLY 195 (936)
Q Consensus 127 st~~iLiGt~~G~i~e~~i~~~~~~~~~~k~v~~l~~~~~~I~gi~~~~~~~~~~~~~~i~ast~~rly 195 (936)
..|.|++|+.+|.|=.+. +..+..|+ -+|+-..||++|-+.. + +-.|++||.+-|.
T Consensus 440 ~sG~IvvgS~~GdIRLYd-----ri~~~AKT--AlPgLG~~I~hVdvta---d---GKwil~Tc~tyLl 495 (644)
T KOG2395|consen 440 ESGYIVVGSLKGDIRLYD-----RIGRRAKT--ALPGLGDAIKHVDVTA---D---GKWILATCKTYLL 495 (644)
T ss_pred CCceEEEeecCCcEEeeh-----hhhhhhhh--cccccCCceeeEEeec---c---CcEEEEecccEEE
Confidence 468999999999876552 22334555 3665446899998874 1 3456667766555
No 234
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=71.23 E-value=37 Score=39.15 Aligned_cols=101 Identities=15% Similarity=0.264 Sum_probs=71.6
Q ss_pred CceeEEEEeC-CEEEEEecCCeEEEEeCCCCCceeeEcCCCCCCccceeEEEeCCCCCeEEEEeecCCCccEEEE--ecC
Q 002318 22 GVITCMSAGN-DVIVLGTSKGWLIRHDFGAGDSYDIDLSAGRPGEQSIHKVFVDPGGSHCIATIVGSGGAETFYT--HAK 98 (936)
Q Consensus 22 ~~i~~l~v~~-n~l~l~~~~g~l~ridl~~~~~~~~~l~~~~~~~~~i~~i~lDp~G~hlli~~~~~~~g~~~Y~--~~~ 98 (936)
+...|++++. +.+++|+..|..+.+|....+. +.++.- .++++-+-..|.|..+.+.+. |+..|-. ..+
T Consensus 408 d~~~~~~fhpsg~va~Gt~~G~w~V~d~e~~~l--v~~~~d---~~~ls~v~ysp~G~~lAvgs~---d~~iyiy~Vs~~ 479 (626)
T KOG2106|consen 408 DPAECADFHPSGVVAVGTATGRWFVLDTETQDL--VTIHTD---NEQLSVVRYSPDGAFLAVGSH---DNHIYIYRVSAN 479 (626)
T ss_pred CceeEeeccCcceEEEeeccceEEEEeccccee--EEEEec---CCceEEEEEcCCCCEEEEecC---CCeEEEEEECCC
Confidence 3456666542 3999999999999999922322 333321 478899999999999999988 7776532 334
Q ss_pred CCCceeccCCCCceEEEEEecCCCCCCCCcceEEEEcCC
Q 002318 99 WSKPRVLSKLKGLVVNAVAWNRQQITEASTKEIILGTDT 137 (936)
Q Consensus 99 ~~k~k~L~klkg~~I~sVaw~~~~~~~~st~~iLiGt~~ 137 (936)
-.+...+.|-.|.+|+..-|..+ ..+|.+-+-
T Consensus 480 g~~y~r~~k~~gs~ithLDwS~D-------s~~~~~~S~ 511 (626)
T KOG2106|consen 480 GRKYSRVGKCSGSPITHLDWSSD-------SQFLVSNSG 511 (626)
T ss_pred CcEEEEeeeecCceeEEeeecCC-------CceEEeccC
Confidence 44566677778899999999833 267876443
No 235
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=71.08 E-value=41 Score=36.55 Aligned_cols=103 Identities=14% Similarity=0.185 Sum_probs=66.3
Q ss_pred CCceeEEEEeCCE----EEEEecCCeEEEEeCCC-CCceeeEcCCCCCCccceeEEEeCCCCCeEEEEeecCCCccEEEE
Q 002318 21 RGVITCMSAGNDV----IVLGTSKGWLIRHDFGA-GDSYDIDLSAGRPGEQSIHKVFVDPGGSHCIATIVGSGGAETFYT 95 (936)
Q Consensus 21 ~~~i~~l~v~~n~----l~l~~~~g~l~ridl~~-~~~~~~~l~~~~~~~~~i~~i~lDp~G~hlli~~~~~~~g~~~Y~ 95 (936)
.+.|+|+....+. |.-|-.+|.|..||..+ ..+..+.-+ ..+|+.|-+.|+|.-.|.... |+..--+
T Consensus 83 agsitaL~F~~~~S~shLlS~sdDG~i~iw~~~~W~~~~slK~H-----~~~Vt~lsiHPS~KLALsVg~---D~~lr~W 154 (362)
T KOG0294|consen 83 AGSITALKFYPPLSKSHLLSGSDDGHIIIWRVGSWELLKSLKAH-----KGQVTDLSIHPSGKLALSVGG---DQVLRTW 154 (362)
T ss_pred ccceEEEEecCCcchhheeeecCCCcEEEEEcCCeEEeeeeccc-----ccccceeEecCCCceEEEEcC---Cceeeee
Confidence 4678998877664 78888999999999833 334444444 356999999999997666554 5554445
Q ss_pred ecCCCCceeccCCCCceEEEEEecCCCCCCCCcceEEEEcCCC
Q 002318 96 HAKWSKPRVLSKLKGLVVNAVAWNRQQITEASTKEIILGTDTG 138 (936)
Q Consensus 96 ~~~~~k~k~L~klkg~~I~sVaw~~~~~~~~st~~iLiGt~~G 138 (936)
|.=.-+.-...+|+ ..-+.|-|.+ ++ -.|.++..++
T Consensus 155 NLV~Gr~a~v~~L~-~~at~v~w~~-~G-----d~F~v~~~~~ 190 (362)
T KOG0294|consen 155 NLVRGRVAFVLNLK-NKATLVSWSP-QG-----DHFVVSGRNK 190 (362)
T ss_pred hhhcCccceeeccC-CcceeeEEcC-CC-----CEEEEEeccE
Confidence 43222222223333 3566799993 21 2588877775
No 236
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=70.83 E-value=4.7 Score=34.18 Aligned_cols=50 Identities=20% Similarity=0.328 Sum_probs=38.8
Q ss_pred HHHHchhhHHHHHHhcCC---------h--hhHHHHHHHHHHHHHhcCCHHHHHHHHHHhc
Q 002318 369 KVYLDMKEYAAALANCRD---------P--LQRDQVYLVQAEAAFATKDFHRAASFYAKIN 418 (936)
Q Consensus 369 ~~ll~~~~f~~Al~~~~~---------~--~~~~~I~~~~~~~L~~~g~y~~Aa~~y~~~~ 418 (936)
.+|.+.|+|++|+.+.+. + ..........|.-+...|+|++|.+.|.++.
T Consensus 13 ~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al 73 (78)
T PF13424_consen 13 RVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKAL 73 (78)
T ss_dssp HHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 357788999999988652 1 1345677788999999999999999998875
No 237
>TIGR01063 gyrA DNA gyrase, A subunit. This model describes the common type II DNA topoisomerase (DNA gyrase). Two apparently independently arising families, one in the Proteobacteria and one in Gram-positive lineages, are both designated toposisomerase IV.
Probab=70.79 E-value=2.7e+02 Score=35.37 Aligned_cols=162 Identities=10% Similarity=0.109 Sum_probs=88.2
Q ss_pred CCCceeEEEEe----CCEEEEEecCCeEEEEeC-CCCCcee--eE-cCCCCCCccceeEEEeCCCCCeEEEEeecCCCcc
Q 002318 20 GRGVITCMSAG----NDVIVLGTSKGWLIRHDF-GAGDSYD--ID-LSAGRPGEQSIHKVFVDPGGSHCIATIVGSGGAE 91 (936)
Q Consensus 20 ~~~~i~~l~v~----~n~l~l~~~~g~l~ridl-~~~~~~~--~~-l~~~~~~~~~i~~i~lDp~G~hlli~~~~~~~g~ 91 (936)
+...+.++.+. +..+++.+.+|.+-|+++ .-....+ .. +... . ++.+..++.-.+..++++-|+ +|.
T Consensus 587 ~E~Iv~~i~~~~~~~~~~lvliT~~GyiKRi~l~~~~~~~r~G~~aiklk-e-~D~lv~v~~~~~~d~lll~Ts---~Gr 661 (800)
T TIGR01063 587 DERITAILSVKEFDDGLYLFFATKNGVVKKTSLTEFSNIRSNGIIAIKLD-D-GDELISVRLTSGDDEVMLGSK---NGK 661 (800)
T ss_pred CCeEEEEEEeccCCCCCEEEEEeCCCEEEEEEhHHhhhhccCCcccccCC-C-CCEEEEEEEeCCCCEEEEEEC---CCc
Confidence 33345555543 247999999999999988 2111111 10 1111 1 355666666556677888888 798
Q ss_pred EEEEecCC-------CCceeccCCC-CceEEEEEecCCCCCCCCcceEEEEcCCCcEEEEEEecC---CcccceeeEEee
Q 002318 92 TFYTHAKW-------SKPRVLSKLK-GLVVNAVAWNRQQITEASTKEIILGTDTGQLHEMAVDEK---DKREKYIKLLFE 160 (936)
Q Consensus 92 ~~Y~~~~~-------~k~k~L~klk-g~~I~sVaw~~~~~~~~st~~iLiGt~~G~i~e~~i~~~---~~~~~~~k~v~~ 160 (936)
.+.+.... .+...+.+++ |-.|.++..-++ ...+++.|++|.+..+.+..- .+.-+.++. +.
T Consensus 662 ~~r~~v~eIp~~gr~~~Gv~~i~L~~~E~Vv~~~~v~~------~~~ll~vT~~G~~Kr~~l~e~~~~~R~~kGv~~-ik 734 (800)
T TIGR01063 662 AVRFPEEDVRPMGRAARGVRGIKLKNEDFVVSLLVVSE------ESYLLIVTENGYGKRTSIEEYRETSRGGKGVKS-IK 734 (800)
T ss_pred EEEEEhhhcCCcCCCCCCeecccCCCCCEEEEEEEecc------ccEEEEEecCCcEEEEEHHHccccCCCCcceEE-EE
Confidence 88776422 1222222332 334555444311 236999999999888876421 111122222 35
Q ss_pred eCCCCCceeeEEEEeeccCCCceEEEEEECCCeEEEEe
Q 002318 161 LNELPEAFMGLQMETASLSNGTRYYVMAVTPTRLYSFT 198 (936)
Q Consensus 161 l~~~~~~I~gi~~~~~~~~~~~~~~i~ast~~rly~f~ 198 (936)
+.+.++.+.++.... + ...++++|+..++..|.
T Consensus 735 l~~~~d~lv~~~~v~----~-~~~v~liT~~G~~lrf~ 767 (800)
T TIGR01063 735 ITDRNGQVVGAIAVD----D-DDELMLITSAGKLIRTS 767 (800)
T ss_pred ccCCCCeEEEEEEec----C-CCeEEEEecCCeEEEee
Confidence 543223344444331 2 23577778788888774
No 238
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=70.74 E-value=15 Score=46.98 Aligned_cols=203 Identities=15% Similarity=0.195 Sum_probs=0.0
Q ss_pred HHHHHHHhcccHHHHHHHHhCCCCchhhHHhhHHHHHhHChHHHHHHHHccCCCCCCcchhHhhhcCCCCCCCCChHHHH
Q 002318 539 IVVHHYIQQGEAKKALQMLRKPAVPIDLQYKFAPDLIMLDAYETVESWMTTNNLNPRKLIPAMMRYSSEPHAKNETHEVI 618 (936)
Q Consensus 539 ~ll~~yi~~~~~~~AL~~L~~~~d~~~li~k~~~~Ll~~~p~~ti~ll~~~~~ld~~~li~~L~~~~~~~~~~~~~~~~~ 618 (936)
..+.-++..++|.+|+.+++++.-..+++++|.+..+..+ ++.|++ .++-...+..|+.--.+ ..-..-
T Consensus 699 ~~ir~~Ld~~~Y~~Af~~~RkhRIdlNll~Dh~p~~Fl~n----i~~Fv~--qi~~~~~lnLFls~L~~-----EDvt~t 767 (928)
T PF04762_consen 699 AGIRKLLDAKDYKEAFELCRKHRIDLNLLYDHNPEQFLEN----IELFVE--QIKDVDYLNLFLSSLRN-----EDVTKT 767 (928)
T ss_pred HHHHHHHhhccHHHHHHHHHHhccccceEEECCHHHHHHH----HHHHHH--hcCCHHHHHHHHHhccc-----cccccc
Q ss_pred HHHHHH-------------HhhcCCCCHhHHHHHHHHhh-cCCChHHHHHHHHHhhCCCCCCCCcccCChHHHHHHHHhc
Q 002318 619 KYLEFC-------------VHRLHNEDPGVHNLLLSLYA-KQEDDSALLRFLQCKFGKGRENGPEFFYDPKYALRLCLKE 684 (936)
Q Consensus 619 ~YLe~l-------------i~~~~~~~~~~hn~ll~Ly~-~~~~~~~Ll~fL~~~~~~~~~~~~~~~yd~~~aLrlc~~~ 684 (936)
.|=+.+ ......+-..+-+.+..-.. ..+...-++..|... -...+-+++.||++..+.
T Consensus 768 mY~~~~~~~~~~~~~~~~~~~~~~~KVn~ICdair~~l~~~~~~~~~l~~IlTa~-------vkk~Pp~le~aL~~I~~l 840 (928)
T PF04762_consen 768 MYKDTYPPSSEAQPNSNSSTASSESKVNKICDAIRKALEKPKDKDKYLQPILTAY-------VKKSPPDLEEALQLIKEL 840 (928)
T ss_pred ccccccccccccccccccCCCccccHHHHHHHHHHHHhcccccchhhHHHHHHHH-------HhcCchhHHHHHHHHHHH
Q ss_pred C-----cceeeehhhhccccHHHHHHHHHh-cCHHHHHHHhhccCCCHHHHHHHHHHHHHHHhhcccCCChHhHH-----
Q 002318 685 K-----RMRACVHIYGMMSMHEEAVALALQ-VDPELAMAEADKVEDDEDLRKKLWLMVAKHVIEQEKGTKRENIR----- 753 (936)
Q Consensus 685 ~-----~~~~~v~L~~~~g~~~eAl~l~l~-~di~lA~~~a~~~~~d~~~~kkLWl~ll~~~i~~~~~~~~~~i~----- 753 (936)
+ ..++.+.=+.-+=+..+--+.||- -|+++|.-+|++.+.||. =++-.++.+-..+..-.+-.|+
T Consensus 841 ~~~~~~~ae~alkyl~fLvDvn~Ly~~ALG~YDl~Lal~VAq~SQkDPK----EYLPfL~~L~~l~~~~rry~ID~hLkR 916 (928)
T PF04762_consen 841 REEDPESAEEALKYLCFLVDVNKLYDVALGTYDLELALMVAQQSQKDPK----EYLPFLQELQKLPPLYRRYKIDDHLKR 916 (928)
T ss_pred HhcChHHHHHHHhHheeeccHHHHHHHHhhhcCHHHHHHHHHHhccChH----HHHHHHHHHHhCChhheeeeHhhhhCC
Q ss_pred --HHHHHHHhcC
Q 002318 754 --KAIAFLKETD 763 (936)
Q Consensus 754 --~~l~~L~~~~ 763 (936)
+|++.|.+++
T Consensus 917 y~kAL~~L~~~G 928 (928)
T PF04762_consen 917 YEKALRHLSACG 928 (928)
T ss_pred HHHHHHHHHhhC
No 239
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=70.33 E-value=32 Score=36.06 Aligned_cols=109 Identities=12% Similarity=0.241 Sum_probs=69.6
Q ss_pred ceeEEEEeCCEEEEEecCCeEEEEeC-CCCC------ceeeEcCCC--CCCccceeEEEeCCCCCeEEEEeecCCCccEE
Q 002318 23 VITCMSAGNDVIVLGTSKGWLIRHDF-GAGD------SYDIDLSAG--RPGEQSIHKVFVDPGGSHCIATIVGSGGAETF 93 (936)
Q Consensus 23 ~i~~l~v~~n~l~l~~~~g~l~ridl-~~~~------~~~~~l~~~--~~~~~~i~~i~lDp~G~hlli~~~~~~~g~~~ 93 (936)
.|-.++...++|.-|-. |.|+-|-. .-.+ .-+..+|.. ....-.|+-+|+||.-.-++.... ||..|
T Consensus 64 piy~~~f~d~~Lls~gd-G~V~gw~W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~~AgG---D~~~y 139 (325)
T KOG0649|consen 64 PIYYLAFHDDFLLSGGD-GLVYGWEWNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSILFAGG---DGVIY 139 (325)
T ss_pred CeeeeeeehhheeeccC-ceEEEeeehhhhhhccchhhhhhcCccccCcccCCccceeEeccCCCcEEEecC---CeEEE
Confidence 46677777666655544 88887755 1111 112223321 112247999999999777777654 78888
Q ss_pred EEecCCCCceeccCCCCc--eEEEEEecCCCCCCCCcceEEEEcCCCcEEEE
Q 002318 94 YTHAKWSKPRVLSKLKGL--VVNAVAWNRQQITEASTKEIILGTDTGQLHEM 143 (936)
Q Consensus 94 Y~~~~~~k~k~L~klkg~--~I~sVaw~~~~~~~~st~~iLiGt~~G~i~e~ 143 (936)
-+....-+++.. +||+ .|-||+--+ +.+.||-|.++|.+-.-
T Consensus 140 ~~dlE~G~i~r~--~rGHtDYvH~vv~R~------~~~qilsG~EDGtvRvW 183 (325)
T KOG0649|consen 140 QVDLEDGRIQRE--YRGHTDYVHSVVGRN------ANGQILSGAEDGTVRVW 183 (325)
T ss_pred EEEecCCEEEEE--EcCCcceeeeeeecc------cCcceeecCCCccEEEE
Confidence 887766655443 3665 788888741 34699999999976443
No 240
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=70.27 E-value=23 Score=38.44 Aligned_cols=103 Identities=10% Similarity=0.111 Sum_probs=65.9
Q ss_pred CceeEEEEeCC--EEEEEecCCeEEEEeC--C------CCCceeeEcCCCCCCccceeEEEeCCCCCeEEEEeecCCCcc
Q 002318 22 GVITCMSAGND--VIVLGTSKGWLIRHDF--G------AGDSYDIDLSAGRPGEQSIHKVFVDPGGSHCIATIVGSGGAE 91 (936)
Q Consensus 22 ~~i~~l~v~~n--~l~l~~~~g~l~ridl--~------~~~~~~~~l~~~~~~~~~i~~i~lDp~G~hlli~~~~~~~g~ 91 (936)
.+++.+|.+|+ .++-+..+|+.-.||. + |--..+...|.-..+..++ ++-|.|.|.-+.++.. +.-
T Consensus 279 saV~~~aFsn~S~r~vtvSkDG~wriwdtdVrY~~~qDpk~Lk~g~~pl~aag~~p~-RL~lsP~g~~lA~s~g---s~l 354 (420)
T KOG2096|consen 279 SAVLAAAFSNSSTRAVTVSKDGKWRIWDTDVRYEAGQDPKILKEGSAPLHAAGSEPV-RLELSPSGDSLAVSFG---SDL 354 (420)
T ss_pred hheeeeeeCCCcceeEEEecCCcEEEeeccceEecCCCchHhhcCCcchhhcCCCce-EEEeCCCCcEEEeecC---Cce
Confidence 35788888887 5677778899888876 1 1112233333323333454 9999999998888875 333
Q ss_pred EEEEecCCCCceeccCCCCceEEEEEecCCCCCCCCcceEEEEc
Q 002318 92 TFYTHAKWSKPRVLSKLKGLVVNAVAWNRQQITEASTKEIILGT 135 (936)
Q Consensus 92 ~~Y~~~~~~k~k~L~klkg~~I~sVaw~~~~~~~~st~~iLiGt 135 (936)
..|-.+.-++--.+.+..+-.|+|++|. ++|.+++-+
T Consensus 355 ~~~~se~g~~~~~~e~~h~~~Is~is~~-------~~g~~~atc 391 (420)
T KOG2096|consen 355 KVFASEDGKDYPELEDIHSTTISSISYS-------SDGKYIATC 391 (420)
T ss_pred EEEEcccCccchhHHHhhcCceeeEEec-------CCCcEEeee
Confidence 3444444333334666677899999998 355666543
No 241
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=69.92 E-value=1.6e+02 Score=31.64 Aligned_cols=284 Identities=14% Similarity=0.150 Sum_probs=151.2
Q ss_pred cCCCceeEEEEe---CCEEEEEecCCeEEEEeCCCCCceeeEcCCCCC--CccceeEEEeCCCCCeEEEEeecCCCccEE
Q 002318 19 KGRGVITCMSAG---NDVIVLGTSKGWLIRHDFGAGDSYDIDLSAGRP--GEQSIHKVFVDPGGSHCIATIVGSGGAETF 93 (936)
Q Consensus 19 ~~~~~i~~l~v~---~n~l~l~~~~g~l~ridl~~~~~~~~~l~~~~~--~~~~i~~i~lDp~G~hlli~~~~~~~g~~~ 93 (936)
-.+|-|+.++.. .++++=+-...+++.++|..++. ++=.|.++. -.-.|.++-+.|.|.+++..+- +|...
T Consensus 13 gh~d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~dd~-~~G~~~r~~~GHsH~v~dv~~s~dg~~alS~sw---D~~lr 88 (315)
T KOG0279|consen 13 GHTDWVTALAIKIKNSDILVSASRDKTIIVWKLTSDDI-KYGVPVRRLTGHSHFVSDVVLSSDGNFALSASW---DGTLR 88 (315)
T ss_pred CCCceEEEEEeecCCCceEEEcccceEEEEEEeccCcc-ccCceeeeeeccceEecceEEccCCceEEeccc---cceEE
Confidence 345667777765 45778888889999999943332 122222211 1357889999999999998887 89998
Q ss_pred EEecCCCCceeccCCCCceEEEEEecCCCCCCCCcceEEEEcCCCcEEEEEEecCCcccceeeEEeeeCCC--CCceeeE
Q 002318 94 YTHAKWSKPRVLSKLKGLVVNAVAWNRQQITEASTKEIILGTDTGQLHEMAVDEKDKREKYIKLLFELNEL--PEAFMGL 171 (936)
Q Consensus 94 Y~~~~~~k~k~L~klkg~~I~sVaw~~~~~~~~st~~iLiGt~~G~i~e~~i~~~~~~~~~~k~v~~l~~~--~~~I~gi 171 (936)
-+....-+....--..+.+|.|||++++ .+.|+-|..+-.|-..++.+. + .|++.+. .+=|+.+
T Consensus 89 lWDl~~g~~t~~f~GH~~dVlsva~s~d------n~qivSGSrDkTiklwnt~g~------c--k~t~~~~~~~~WVscv 154 (315)
T KOG0279|consen 89 LWDLATGESTRRFVGHTKDVLSVAFSTD------NRQIVSGSRDKTIKLWNTLGV------C--KYTIHEDSHREWVSCV 154 (315)
T ss_pred EEEecCCcEEEEEEecCCceEEEEecCC------CceeecCCCcceeeeeeeccc------E--EEEEecCCCcCcEEEE
Confidence 8776554433322225679999999943 348999999988887776553 1 2344431 2348888
Q ss_pred EEEeeccCCCceEEEEEEC--CCeEEEEecC-CchHHHHhhhhcccccccccCCCcCCCcceeeeccCCCceEEEeecCc
Q 002318 172 QMETASLSNGTRYYVMAVT--PTRLYSFTGF-GSLDTVFASYLDRAVHFMELPGEILNSELHFFIKQRRAVHFAWLSGAG 248 (936)
Q Consensus 172 ~~~~~~~~~~~~~~i~ast--~~rly~f~~~-~~l~~~f~~~~~~~~~~~el~~~~~~s~~~~~~~~~~~~~faW~t~~g 248 (936)
.|.+ ++...+| +++ +.-+--|.-. ..+...|-.... -.+..++. |...+..+ +...-..+.|--+.|
T Consensus 155 rfsP----~~~~p~I-vs~s~DktvKvWnl~~~~l~~~~~gh~~-~v~t~~vS---pDGslcas-Ggkdg~~~LwdL~~~ 224 (315)
T KOG0279|consen 155 RFSP----NESNPII-VSASWDKTVKVWNLRNCQLRTTFIGHSG-YVNTVTVS---PDGSLCAS-GGKDGEAMLWDLNEG 224 (315)
T ss_pred EEcC----CCCCcEE-EEccCCceEEEEccCCcchhhccccccc-cEEEEEEC---CCCCEEec-CCCCceEEEEEccCC
Confidence 8873 2222333 343 4444445321 112211110000 00000100 10101111 111122333311111
Q ss_pred eEEEEeccCCCCCCCCCCCccccccccccccccCCCCCCCCccccccCCceEEEEECCEEEEEecCCCcEEEEEEecCCC
Q 002318 249 IYHGGLNFGAQRSSPNGDENFVENKALLSYSKLSEGAEAVKPGSMAVSEYHFLLLMGNKVKVVNRISEQIIEELQFDQTS 328 (936)
Q Consensus 249 i~~g~i~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~p~si~lT~fHillL~~~~l~ivn~l~~~vv~~~~~~~~~ 328 (936)
=- +...+.. ..+.-+.+.-+.|-++.+.+..|+|.++.++.+|++..++...
T Consensus 225 k~------------------------lysl~a~----~~v~sl~fspnrywL~~at~~sIkIwdl~~~~~v~~l~~d~~g 276 (315)
T KOG0279|consen 225 KN------------------------LYSLEAF----DIVNSLCFSPNRYWLCAATATSIKIWDLESKAVVEELKLDGIG 276 (315)
T ss_pred ce------------------------eEeccCC----CeEeeEEecCCceeEeeccCCceEEEeccchhhhhhccccccc
Confidence 00 1001100 0111233445678888888999999999999999987765422
Q ss_pred C-CcccceeEEEe--ecCCCeEEEEeCCcEEEE
Q 002318 329 D-SISRGIIGLCS--DATAGVFYAYDQNSIFQV 358 (936)
Q Consensus 329 ~-~~~~~~~gl~~--D~~~~~~~i~S~~~i~~~ 358 (936)
. ...+.++.+.. -....+.|.--.++++++
T Consensus 277 ~s~~~~~~~clslaws~dG~tLf~g~td~~irv 309 (315)
T KOG0279|consen 277 PSSKAGDPICLSLAWSADGQTLFAGYTDNVIRV 309 (315)
T ss_pred cccccCCcEEEEEEEcCCCcEEEeeecCCcEEE
Confidence 1 12234444332 223567776666665554
No 242
>KOG4328 consensus WD40 protein [Function unknown]
Probab=69.81 E-value=51 Score=37.56 Aligned_cols=136 Identities=13% Similarity=0.237 Sum_probs=82.7
Q ss_pred CCceeEEEEeC----CEEEEEecCCeEEEEeCC---CCCceeeEcCCCCCCccceeEEEeCCCCCe-EEEEeecCCCccE
Q 002318 21 RGVITCMSAGN----DVIVLGTSKGWLIRHDFG---AGDSYDIDLSAGRPGEQSIHKVFVDPGGSH-CIATIVGSGGAET 92 (936)
Q Consensus 21 ~~~i~~l~v~~----n~l~l~~~~g~l~ridl~---~~~~~~~~l~~~~~~~~~i~~i~lDp~G~h-lli~~~~~~~g~~ 92 (936)
.+.|+|++.+. ++++.|-..|.|-.||++ |+. +.+-+=.+. .++|.+|...|...- ++.++- +|..
T Consensus 186 ~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~-d~v~~f~~h--s~~Vs~l~F~P~n~s~i~ssSy---DGti 259 (498)
T KOG4328|consen 186 DRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDK-DGVYLFTPH--SGPVSGLKFSPANTSQIYSSSY---DGTI 259 (498)
T ss_pred ccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCcc-CceEEeccC--CccccceEecCCChhheeeecc---Ccee
Confidence 35699999874 788999999999999993 332 223222222 368999999998554 444444 7988
Q ss_pred EEEecCCCCceeccCCCC--ceEEEEEecCCCCCCCCcceEEEEcCCCcEEEEEEecC-CcccceeeEEeeeCCCCCcee
Q 002318 93 FYTHAKWSKPRVLSKLKG--LVVNAVAWNRQQITEASTKEIILGTDTGQLHEMAVDEK-DKREKYIKLLFELNELPEAFM 169 (936)
Q Consensus 93 ~Y~~~~~~k~k~L~klkg--~~I~sVaw~~~~~~~~st~~iLiGt~~G~i~e~~i~~~-~~~~~~~k~v~~l~~~~~~I~ 169 (936)
=|.+........+-.+++ .-+.+.-++ ...+.+|+|+.-| ....|+-+ ++.+ |.+ ..+.++ .|+
T Consensus 260 R~~D~~~~i~e~v~s~~~d~~~fs~~d~~------~e~~~vl~~~~~G--~f~~iD~R~~~s~-~~~--~~lh~k--KI~ 326 (498)
T KOG4328|consen 260 RLQDFEGNISEEVLSLDTDNIWFSSLDFS------AESRSVLFGDNVG--NFNVIDLRTDGSE-YEN--LRLHKK--KIT 326 (498)
T ss_pred eeeeecchhhHHHhhcCccceeeeecccc------CCCccEEEeeccc--ceEEEEeecCCcc-chh--hhhhhc--ccc
Confidence 888876654444433321 122222222 2457999999999 22233322 1111 222 245553 599
Q ss_pred eEEEEe
Q 002318 170 GLQMET 175 (936)
Q Consensus 170 gi~~~~ 175 (936)
++.+..
T Consensus 327 sv~~NP 332 (498)
T KOG4328|consen 327 SVALNP 332 (498)
T ss_pred eeecCC
Confidence 999874
No 243
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=69.50 E-value=1.8e+02 Score=31.92 Aligned_cols=156 Identities=16% Similarity=0.144 Sum_probs=90.5
Q ss_pred CCCceeEEEEeCCEEEEEecCCeEEEEeC--CCCCceeeEcCCCCCCccceeEEEeCCCCCeEEEEeecCCCccEEEEec
Q 002318 20 GRGVITCMSAGNDVIVLGTSKGWLIRHDF--GAGDSYDIDLSAGRPGEQSIHKVFVDPGGSHCIATIVGSGGAETFYTHA 97 (936)
Q Consensus 20 ~~~~i~~l~v~~n~l~l~~~~g~l~ridl--~~~~~~~~~l~~~~~~~~~i~~i~lDp~G~hlli~~~~~~~g~~~Y~~~ 97 (936)
+...|.++.+.-+-+++.+.+ +|+.+.. +|.....++.-..+ .+ =..++|+-.-.++..-+-..|++--++.
T Consensus 93 f~~~I~~V~l~r~riVvvl~~-~I~VytF~~n~k~l~~~et~~NP--kG---lC~~~~~~~k~~LafPg~k~GqvQi~dL 166 (346)
T KOG2111|consen 93 FNSEIKAVKLRRDRIVVVLEN-KIYVYTFPDNPKLLHVIETRSNP--KG---LCSLCPTSNKSLLAFPGFKTGQVQIVDL 166 (346)
T ss_pred eccceeeEEEcCCeEEEEecC-eEEEEEcCCChhheeeeecccCC--Cc---eEeecCCCCceEEEcCCCccceEEEEEh
Confidence 344689999999999999988 8888887 55554444432111 11 1334555333333322112477777777
Q ss_pred CCCCce--eccCCCCceEEEEEecCCCCCCCCcceEEEEcCCCcEEEEEEecCCcccceeeEEeeeCC--CCCceeeEEE
Q 002318 98 KWSKPR--VLSKLKGLVVNAVAWNRQQITEASTKEIILGTDTGQLHEMAVDEKDKREKYIKLLFELNE--LPEAFMGLQM 173 (936)
Q Consensus 98 ~~~k~k--~L~klkg~~I~sVaw~~~~~~~~st~~iLiGt~~G~i~e~~i~~~~~~~~~~k~v~~l~~--~~~~I~gi~~ 173 (936)
.++++. ..-+-..-.|.||+.|.+ ++ -+-.++.+|.+... ++..++ ..++++.- .+..|..|.+
T Consensus 167 ~~~~~~~p~~I~AH~s~Iacv~Ln~~-Gt-----~vATaStkGTLIRI-Fdt~~g-----~~l~E~RRG~d~A~iy~iaF 234 (346)
T KOG2111|consen 167 ASTKPNAPSIINAHDSDIACVALNLQ-GT-----LVATASTKGTLIRI-FDTEDG-----TLLQELRRGVDRADIYCIAF 234 (346)
T ss_pred hhcCcCCceEEEcccCceeEEEEcCC-cc-----EEEEeccCcEEEEE-EEcCCC-----cEeeeeecCCchheEEEEEe
Confidence 666652 223335669999999932 11 44456678977654 232211 12334431 1345777777
Q ss_pred EeeccCCCceEEEEEECCCeEEEEe
Q 002318 174 ETASLSNGTRYYVMAVTPTRLYSFT 198 (936)
Q Consensus 174 ~~~~~~~~~~~~i~ast~~rly~f~ 198 (936)
. .+..++.++|....|.-|.
T Consensus 235 S-----p~~s~LavsSdKgTlHiF~ 254 (346)
T KOG2111|consen 235 S-----PNSSWLAVSSDKGTLHIFS 254 (346)
T ss_pred C-----CCccEEEEEcCCCeEEEEE
Confidence 6 3457888888766666664
No 244
>KOG2932 consensus E3 ubiquitin ligase involved in ubiquitination of E-cadherin complex [Posttranslational modification, protein turnover, chaperones]
Probab=69.39 E-value=2.4 Score=45.17 Aligned_cols=35 Identities=29% Similarity=0.663 Sum_probs=27.8
Q ss_pred ccccccchhhhhcccccccccccCCCCCCCCEEEEcCCChhHHHhHHHHHhhc
Q 002318 834 EDCGVCRRKILVAGRDYRMARGYASVGPMAPFYVFPCGHAFHAQCLIAHVTQC 886 (936)
Q Consensus 834 ~~C~~C~k~L~~~~~~~~~~~~~~~~~~~~~fvvFpCgH~fH~~CL~~~~~~~ 886 (936)
.-|..|+++|.-.| | +.||.|+|..+|....-.+.
T Consensus 91 HfCd~Cd~PI~IYG---R---------------mIPCkHvFCl~CAr~~~dK~ 125 (389)
T KOG2932|consen 91 HFCDRCDFPIAIYG---R---------------MIPCKHVFCLECARSDSDKI 125 (389)
T ss_pred EeecccCCcceeee---c---------------ccccchhhhhhhhhcCcccc
Confidence 46999999987654 5 67999999999998765333
No 245
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=69.27 E-value=1.9e+02 Score=32.23 Aligned_cols=111 Identities=19% Similarity=0.213 Sum_probs=70.4
Q ss_pred CceeEEEEeCCEEEEEec---CCeEEEEeCCCCCceeeEcCCCCCCccceeEEEeCCCCCeEEEEeecCCCccEEE--Ee
Q 002318 22 GVITCMSAGNDVIVLGTS---KGWLIRHDFGAGDSYDIDLSAGRPGEQSIHKVFVDPGGSHCIATIVGSGGAETFY--TH 96 (936)
Q Consensus 22 ~~i~~l~v~~n~l~l~~~---~g~l~ridl~~~~~~~~~l~~~~~~~~~i~~i~lDp~G~hlli~~~~~~~g~~~Y--~~ 96 (936)
..||+|+-+++=.-+.+. +..+..||. +.-..++|+... .+-+..+--.|+|+.++..+- |+---. .+
T Consensus 196 ~pVtsmqwn~dgt~l~tAS~gsssi~iWdp--dtg~~~pL~~~g--lgg~slLkwSPdgd~lfaAt~---davfrlw~e~ 268 (445)
T KOG2139|consen 196 NPVTSMQWNEDGTILVTASFGSSSIMIWDP--DTGQKIPLIPKG--LGGFSLLKWSPDGDVLFAATC---DAVFRLWQEN 268 (445)
T ss_pred ceeeEEEEcCCCCEEeecccCcceEEEEcC--CCCCcccccccC--CCceeeEEEcCCCCEEEEecc---cceeeeehhc
Confidence 348999999996655553 356777776 333455665333 346778888999998888876 443322 35
Q ss_pred cCCCCceeccCCCCceEEEEEecCCCCCCCCcceEEEEcCC--CcEEEEEEecC
Q 002318 97 AKWSKPRVLSKLKGLVVNAVAWNRQQITEASTKEIILGTDT--GQLHEMAVDEK 148 (936)
Q Consensus 97 ~~~~k~k~L~klkg~~I~sVaw~~~~~~~~st~~iLiGt~~--G~i~e~~i~~~ 148 (936)
..+++-|-.. ..| .|...+|++. |++|+=+-- -.||.......
T Consensus 269 q~wt~erw~l-gsg-rvqtacWspc-------GsfLLf~~sgsp~lysl~f~~~ 313 (445)
T KOG2139|consen 269 QSWTKERWIL-GSG-RVQTACWSPC-------GSFLLFACSGSPRLYSLTFDGE 313 (445)
T ss_pred ccceecceec-cCC-ceeeeeecCC-------CCEEEEEEcCCceEEEEeecCC
Confidence 6666655432 156 8999999942 355554433 45777766544
No 246
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=69.18 E-value=1.7e+02 Score=38.07 Aligned_cols=12 Identities=8% Similarity=-0.028 Sum_probs=8.2
Q ss_pred HHHHHHHHHhhc
Q 002318 732 LWLMVAKHVIEQ 743 (936)
Q Consensus 732 LWl~ll~~~i~~ 743 (936)
+|..++++++..
T Consensus 249 l~~ala~~yi~~ 260 (987)
T PRK09782 249 SRITYATALAYR 260 (987)
T ss_pred HHHHHHHHHHHC
Confidence 677777766665
No 247
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=69.07 E-value=2.9e+02 Score=34.08 Aligned_cols=223 Identities=13% Similarity=0.219 Sum_probs=121.7
Q ss_pred ceEEEEEecCCCCCC----CCcceEEEEc--CCCcEEEEEEecCCcccceeeEEeeeCCCCCceeeEEEEeeccCCCceE
Q 002318 111 LVVNAVAWNRQQITE----ASTKEIILGT--DTGQLHEMAVDEKDKREKYIKLLFELNELPEAFMGLQMETASLSNGTRY 184 (936)
Q Consensus 111 ~~I~sVaw~~~~~~~----~st~~iLiGt--~~G~i~e~~i~~~~~~~~~~k~v~~l~~~~~~I~gi~~~~~~~~~~~~~ 184 (936)
-.|++|-|.+..... .++-..+|.. -.|.|.....-.. -++-.+.....||..+.|.... ...|.
T Consensus 56 s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil~d~~~~-------s~~~~l~~~~~~~qdl~W~~~r--d~Srd 126 (1062)
T KOG1912|consen 56 SAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIILVDFVLA-------SVINWLSHSNDSVQDLCWVPAR--DDSRD 126 (1062)
T ss_pred cceeEEEeccCCCchhccCccccceeEEeccccCcEEEEEehhh-------hhhhhhcCCCcchhheeeeecc--Ccchh
Confidence 589999998654221 1122445544 4488887665432 1111333323679999997542 34466
Q ss_pred EEEEEC-CCeEEEEecCCchHHHHhhhhcccccccccCCCcCCCcceeeeccC-CCceEEEeecCceEEEEeccCCCCCC
Q 002318 185 YVMAVT-PTRLYSFTGFGSLDTVFASYLDRAVHFMELPGEILNSELHFFIKQR-RAVHFAWLSGAGIYHGGLNFGAQRSS 262 (936)
Q Consensus 185 ~i~ast-~~rly~f~~~~~l~~~f~~~~~~~~~~~el~~~~~~s~~~~~~~~~-~~~~faW~t~~gi~~g~i~~~~~~~~ 262 (936)
++.|.+ +.-+--| ++.+.+.++ +|...+.. +..++.+. .+..|.-++..|++.---..+...+.
T Consensus 127 ~LlaIh~ss~lvLw-ntdtG~k~W-k~~ys~~i------------Ls~f~~DPfd~rh~~~l~s~g~vl~~~~l~~sep~ 192 (1062)
T KOG1912|consen 127 VLLAIHGSSTLVLW-NTDTGEKFW-KYDYSHEI------------LSCFRVDPFDSRHFCVLGSKGFVLSCKDLGLSEPD 192 (1062)
T ss_pred eeEEecCCcEEEEE-EccCCceee-ccccCCcc------------eeeeeeCCCCcceEEEEccCceEEEEeccCCCCCC
Confidence 666665 5555545 223223222 23221111 11122222 26788888999988753332211110
Q ss_pred CCCCCccccccccccccccC-------CC--CCCCCccccccC-----------CceEEEEECCEEEEEecCCCcEEEEE
Q 002318 263 PNGDENFVENKALLSYSKLS-------EG--AEAVKPGSMAVS-----------EYHFLLLMGNKVKVVNRISEQIIEEL 322 (936)
Q Consensus 263 ~~~~~~~~~~~~l~~~~~l~-------~~--~~~~~p~si~lT-----------~fHillL~~~~l~ivn~l~~~vv~~~ 322 (936)
.++..-.+.+. .+.++ .+ ..+.++-..++| ..|++++|+..|-|++..=+..+...
T Consensus 193 ~pgk~~qI~sd----~Sdl~~lere~at~ns~ts~~~sa~fity~a~faf~p~~rn~lfi~~prellv~dle~~~~l~vv 268 (1062)
T KOG1912|consen 193 VPGKEFQITSD----HSDLAHLERETATGNSTTSTPASAYFITYCAQFAFSPHWRNILFITFPRELLVFDLEYECCLAVV 268 (1062)
T ss_pred CCceeEEEecC----ccchhhhhhhhhccccccCCCcchhHHHHHHhhhcChhhhceEEEEeccceEEEcchhhceeEEE
Confidence 01111001110 01110 00 111222222332 46888999999999999999988888
Q ss_pred EecCCCCCcccceeEEEeecCCCeEEEEeCCcEEEEEcccch
Q 002318 323 QFDQTSDSISRGIIGLCSDATAGVFYAYDQNSIFQVSVNDEG 364 (936)
Q Consensus 323 ~~~~~~~~~~~~~~gl~~D~~~~~~~i~S~~~i~~~~~~~e~ 364 (936)
.++- +.-+++.+..|+.....|+.-.++-.-+.+++|.
T Consensus 269 pier----~~akfv~vlP~~~rd~LfclH~nG~ltirvrk~~ 306 (1062)
T KOG1912|consen 269 PIER----GGAKFVDVLPDPRRDALFCLHSNGRLTIRVRKEE 306 (1062)
T ss_pred Eecc----CCcceeEeccCCCcceEEEEecCCeEEEEEeecc
Confidence 8741 2347778888888888999999998888877773
No 248
>PRK00178 tolB translocation protein TolB; Provisional
Probab=68.98 E-value=2.2e+02 Score=32.83 Aligned_cols=115 Identities=14% Similarity=0.192 Sum_probs=67.0
Q ss_pred CCceeEEEEe--CCEE-EEEecC--CeEEEEeCCCCCceeeEcCCCCCCccceeEEEeCCCCCeEEEEeecCCCccEEEE
Q 002318 21 RGVITCMSAG--NDVI-VLGTSK--GWLIRHDFGAGDSYDIDLSAGRPGEQSIHKVFVDPGGSHCIATIVGSGGAETFYT 95 (936)
Q Consensus 21 ~~~i~~l~v~--~n~l-~l~~~~--g~l~ridl~~~~~~~~~l~~~~~~~~~i~~i~lDp~G~hlli~~~~~~~g~~~Y~ 95 (936)
.+.+.+.+.+ ++.| |+...+ ..|+++|+...+...+ ... .+.+......|.|.+++++++..++.+.|.+
T Consensus 198 ~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~l--~~~---~g~~~~~~~SpDG~~la~~~~~~g~~~Iy~~ 272 (430)
T PRK00178 198 REPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQI--TNF---EGLNGAPAWSPDGSKLAFVLSKDGNPEIYVM 272 (430)
T ss_pred CCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEEc--cCC---CCCcCCeEECCCCCEEEEEEccCCCceEEEE
Confidence 3456666666 3345 444443 4699999933333322 211 1233456778999999877653233466767
Q ss_pred ecCCCCceeccCCCCceEEEEEecCCCCCCCCcceEEEEcCC-C--cEEEEEEec
Q 002318 96 HAKWSKPRVLSKLKGLVVNAVAWNRQQITEASTKEIILGTDT-G--QLHEMAVDE 147 (936)
Q Consensus 96 ~~~~~k~k~L~klkg~~I~sVaw~~~~~~~~st~~iLiGt~~-G--~i~e~~i~~ 147 (936)
+....+.+.|.+..+ ...+..|.++ .+.|+..+.. | .||...+..
T Consensus 273 d~~~~~~~~lt~~~~-~~~~~~~spD------g~~i~f~s~~~g~~~iy~~d~~~ 320 (430)
T PRK00178 273 DLASRQLSRVTNHPA-IDTEPFWGKD------GRTLYFTSDRGGKPQIYKVNVNG 320 (430)
T ss_pred ECCCCCeEEcccCCC-CcCCeEECCC------CCEEEEEECCCCCceEEEEECCC
Confidence 777767777775433 4567789842 2366666543 3 577766644
No 249
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=68.72 E-value=6.5 Score=32.30 Aligned_cols=49 Identities=16% Similarity=0.272 Sum_probs=33.4
Q ss_pred HHHchhhHHHHHHhcCCh----hhHHHHHHHHHHHHHhcC-CHHHHHHHHHHhc
Q 002318 370 VYLDMKEYAAALANCRDP----LQRDQVYLVQAEAAFATK-DFHRAASFYAKIN 418 (936)
Q Consensus 370 ~ll~~~~f~~Al~~~~~~----~~~~~I~~~~~~~L~~~g-~y~~Aa~~y~~~~ 418 (936)
.++..|+|++|+...+.. ..-..+....|.-++..| +|.+|.+.|.+..
T Consensus 12 ~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al 65 (69)
T PF13414_consen 12 IYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKAL 65 (69)
T ss_dssp HHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHH
Confidence 467778888888776531 123457777777788887 6888887776653
No 250
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=68.63 E-value=70 Score=34.66 Aligned_cols=146 Identities=11% Similarity=0.133 Sum_probs=88.1
Q ss_pred eEEEEeCCEEEEEecCCeEEEEeCCCCCceeeEcCCCCCCccceeEEEeCCCCCeEEEEeecCCCccEEEEe--cCCCCc
Q 002318 25 TCMSAGNDVIVLGTSKGWLIRHDFGAGDSYDIDLSAGRPGEQSIHKVFVDPGGSHCIATIVGSGGAETFYTH--AKWSKP 102 (936)
Q Consensus 25 ~~l~v~~n~l~l~~~~g~l~ridl~~~~~~~~~l~~~~~~~~~i~~i~lDp~G~hlli~~~~~~~g~~~Y~~--~~~~k~ 102 (936)
.++.-....+..|.-+|.|-.||++.+++.-+ + ++..++|+.+++.|.|..++.-+- +...--+. ...+.-
T Consensus 180 v~f~d~s~qv~sggIdn~ikvWd~r~~d~~~~-l---sGh~DtIt~lsls~~gs~llsnsM---d~tvrvwd~rp~~p~~ 252 (338)
T KOG0265|consen 180 VGFKDTSDQVISGGIDNDIKVWDLRKNDGLYT-L---SGHADTITGLSLSRYGSFLLSNSM---DNTVRVWDVRPFAPSQ 252 (338)
T ss_pred EEecccccceeeccccCceeeeccccCcceEE-e---ecccCceeeEEeccCCCccccccc---cceEEEEEecccCCCC
Confidence 44445567888899999999999955554322 2 223579999999999998775332 22222111 111111
Q ss_pred eeccCCCC------ceEEEEEecCCCCCCCCcceEEEEcCCCcEEEEEEecCCcccceeeEEeeeCCCCCceeeEEEEee
Q 002318 103 RVLSKLKG------LVVNAVAWNRQQITEASTKEIILGTDTGQLHEMAVDEKDKREKYIKLLFELNELPEAFMGLQMETA 176 (936)
Q Consensus 103 k~L~klkg------~~I~sVaw~~~~~~~~st~~iLiGt~~G~i~e~~i~~~~~~~~~~k~v~~l~~~~~~I~gi~~~~~ 176 (936)
|.+.-+.| ...-.++|.+.. .-|=.|..+-.+|.-.-. +.+.+|.||+-.+.|..+.+..
T Consensus 253 R~v~if~g~~hnfeknlL~cswsp~~------~~i~ags~dr~vyvwd~~-------~r~~lyklpGh~gsvn~~~Fhp- 318 (338)
T KOG0265|consen 253 RCVKIFQGHIHNFEKNLLKCSWSPNG------TKITAGSADRFVYVWDTT-------SRRILYKLPGHYGSVNEVDFHP- 318 (338)
T ss_pred ceEEEeecchhhhhhhcceeeccCCC------CccccccccceEEEeecc-------cccEEEEcCCcceeEEEeeecC-
Confidence 22222222 233456888432 245566777766654332 4578999997656777777763
Q ss_pred ccCCCceEEEEEECCCeEE
Q 002318 177 SLSNGTRYYVMAVTPTRLY 195 (936)
Q Consensus 177 ~~~~~~~~~i~ast~~rly 195 (936)
...++..+++..++|
T Consensus 319 ----~e~iils~~sdk~i~ 333 (338)
T KOG0265|consen 319 ----TEPIILSCSSDKTIY 333 (338)
T ss_pred ----CCcEEEEeccCceeE
Confidence 235777777788888
No 251
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=68.61 E-value=2.9e+02 Score=33.97 Aligned_cols=104 Identities=12% Similarity=0.052 Sum_probs=62.7
Q ss_pred eeEEEEeCC-EEEEEecCCeEEEEeCCCCCceeeEcCCCCCCccceeEEEeCCCCCeEEEEeecCCCccEEEEecCC-CC
Q 002318 24 ITCMSAGND-VIVLGTSKGWLIRHDFGAGDSYDIDLSAGRPGEQSIHKVFVDPGGSHCIATIVGSGGAETFYTHAKW-SK 101 (936)
Q Consensus 24 i~~l~v~~n-~l~l~~~~g~l~ridl~~~~~~~~~l~~~~~~~~~i~~i~lDp~G~hlli~~~~~~~g~~~Y~~~~~-~k 101 (936)
+..|.-+.+ -|.+...+|++++.++.|+..+...+-.... ...|.-.+.-.+| +.+-+. +|..+-++... .+
T Consensus 86 lI~mgWs~~eeLI~v~k~g~v~Vy~~~ge~ie~~svg~e~~-~~~I~ec~~f~~G--Vavlt~---~g~v~~i~~~~~~~ 159 (829)
T KOG2280|consen 86 LIGMGWSDDEELICVQKDGTVHVYGLLGEFIESNSVGFESQ-MSDIVECRFFHNG--VAVLTV---SGQVILINGVEEPK 159 (829)
T ss_pred eeeecccCCceEEEEeccceEEEeecchhhhcccccccccc-cCceeEEEEecCc--eEEEec---CCcEEEEcCCCcch
Confidence 444444433 4566778999999999666655432211111 3567888887778 344444 68887776544 36
Q ss_pred ceeccCCCCceEEEEEecCCCCCCCCcceEEEEc
Q 002318 102 PRVLSKLKGLVVNAVAWNRQQITEASTKEIILGT 135 (936)
Q Consensus 102 ~k~L~klkg~~I~sVaw~~~~~~~~st~~iLiGt 135 (936)
.+.++...+.....-+|.-.. ...+-.+|++-
T Consensus 160 ~~~~~diP~~~~~~~~Wt~~~--~~~~~~~ll~v 191 (829)
T KOG2280|consen 160 LRKMPDIPYNELPKSCWTVFQ--PHRQSTILLDV 191 (829)
T ss_pred hhhCCCCCCccCCCcceeEec--CCCcceeEEee
Confidence 777777777777777886222 11233566653
No 252
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=68.54 E-value=2.2e+02 Score=32.96 Aligned_cols=131 Identities=11% Similarity=0.200 Sum_probs=83.0
Q ss_pred CCCceeEEEEeCC---EEEEEecCCeEEEEeCC-C-CCceeeEcCCCCCCccceeEEEeCCCCCeEEEEeecCCCccEEE
Q 002318 20 GRGVITCMSAGND---VIVLGTSKGWLIRHDFG-A-GDSYDIDLSAGRPGEQSIHKVFVDPGGSHCIATIVGSGGAETFY 94 (936)
Q Consensus 20 ~~~~i~~l~v~~n---~l~l~~~~g~l~ridl~-~-~~~~~~~l~~~~~~~~~i~~i~lDp~G~hlli~~~~~~~g~~~Y 94 (936)
..|-+.|.++++- +++-|--+|+|-.||.+ - +.+.++ .. +.+|..+-.=|.|..++.+. ...+=.
T Consensus 152 htDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~~~v~el--nh----g~pVe~vl~lpsgs~iasAg----Gn~vkV 221 (487)
T KOG0310|consen 152 HTDYVRCGDISPANDHIVVTGSYDGKVRLWDTRSLTSRVVEL--NH----GCPVESVLALPSGSLIASAG----GNSVKV 221 (487)
T ss_pred CcceeEeeccccCCCeEEEecCCCceEEEEEeccCCceeEEe--cC----CCceeeEEEcCCCCEEEEcC----CCeEEE
Confidence 3456777777665 88999999999999992 2 333333 32 36788888889887444332 133334
Q ss_pred EecCCCCceeccCC--CCceEEEEEecCCCCCCCCcceEEEEcCCCcEEEEEEecCCcccceeeEEeeeCCCCCceeeEE
Q 002318 95 THAKWSKPRVLSKL--KGLVVNAVAWNRQQITEASTKEIILGTDTGQLHEMAVDEKDKREKYIKLLFELNELPEAFMGLQ 172 (936)
Q Consensus 95 ~~~~~~k~k~L~kl--kg~~I~sVaw~~~~~~~~st~~iLiGt~~G~i~e~~i~~~~~~~~~~k~v~~l~~~~~~I~gi~ 172 (936)
|..-.- .+.+..+ .+..|||..+.. +....|-|.-||.+=-+.+.. +|.++...- |+||.++.
T Consensus 222 WDl~~G-~qll~~~~~H~KtVTcL~l~s------~~~rLlS~sLD~~VKVfd~t~-------~Kvv~s~~~-~~pvLsia 286 (487)
T KOG0310|consen 222 WDLTTG-GQLLTSMFNHNKTVTCLRLAS------DSTRLLSGSLDRHVKVFDTTN-------YKVVHSWKY-PGPVLSIA 286 (487)
T ss_pred EEecCC-ceehhhhhcccceEEEEEeec------CCceEeecccccceEEEEccc-------eEEEEeeec-ccceeeEE
Confidence 433211 0222222 345899999983 124888888898876665432 677766553 58999999
Q ss_pred EEe
Q 002318 173 MET 175 (936)
Q Consensus 173 ~~~ 175 (936)
+..
T Consensus 287 vs~ 289 (487)
T KOG0310|consen 287 VSP 289 (487)
T ss_pred ecC
Confidence 973
No 253
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=68.25 E-value=2.3e+02 Score=32.59 Aligned_cols=275 Identities=16% Similarity=0.100 Sum_probs=135.6
Q ss_pred HchhhHHHHHHhcCC-hhh--HHHH-HHHHHHHHHhcCCHHHHHHHHHHhcC--CCC-hHH--H-HHHhcCcChHHHHHH
Q 002318 372 LDMKEYAAALANCRD-PLQ--RDQV-YLVQAEAAFATKDFHRAASFYAKINY--ILS-FEE--I-TLKFISVSEQDALRT 441 (936)
Q Consensus 372 l~~~~f~~Al~~~~~-~~~--~~~I-~~~~~~~L~~~g~y~~Aa~~y~~~~~--~~~-~E~--v-~lkFl~~~~~~~L~~ 441 (936)
+-.|+|+.|.+.... +.. -..+ ...-+......|+++.|.+.|.+... ... +.. . +...+..++.+.-..
T Consensus 95 ~~eGd~~~A~k~l~~~~~~~~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~~~~~~~~~l~~a~l~l~~g~~~~Al~ 174 (398)
T PRK10747 95 LAEGDYQQVEKLMTRNADHAEQPVVNYLLAAEAAQQRGDEARANQHLERAAELADNDQLPVEITRVRIQLARNENHAARH 174 (398)
T ss_pred HhCCCHHHHHHHHHHHHhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHCCCHHHHHH
Confidence 334788888877543 221 1233 33446666889999999988887541 111 111 0 223345566666666
Q ss_pred HHHHHhhcccCchhHHHHHHHHHHHHHHHHHHhhhhcccchhhccchHHHHHHHHHHHHHHhcccccCCHHHHHHHHHHc
Q 002318 442 FLLRKLDNLAKDDKCQITMISTWATELYLDKINRLLLEDDTALENRSSEYQSIMREFRAFLSDCKDVLDEATTMKLLESY 521 (936)
Q Consensus 442 YL~~~l~~l~~~~~~~~~lL~~Wl~ely~~~l~~~~~e~~~~~~~~~~~~~~~~~~l~~fl~~~~~~ld~~tv~~ll~~~ 521 (936)
++....+.-+++... ..++.++|+.. ++. +....-+....+. ..++.+..-++...
T Consensus 175 ~l~~~~~~~P~~~~a-----l~ll~~~~~~~-gdw---------------~~a~~~l~~l~k~--~~~~~~~~~~l~~~- 230 (398)
T PRK10747 175 GVDKLLEVAPRHPEV-----LRLAEQAYIRT-GAW---------------SSLLDILPSMAKA--HVGDEEHRAMLEQQ- 230 (398)
T ss_pred HHHHHHhcCCCCHHH-----HHHHHHHHHHH-HhH---------------HHHHHHHHHHHHc--CCCCHHHHHHHHHH-
Confidence 666555444444322 33445555422 111 1111111111110 01122211111100
Q ss_pred CChhHHHHHHHhhhhHHHHHHHHHhcccHHHHHHHHhCCC----CchhhHHhhHHHHHh-HChHHHHHHHHccCCCCCC-
Q 002318 522 GRVEELVFFASLKEQHEIVVHHYIQQGEAKKALQMLRKPA----VPIDLQYKFAPDLIM-LDAYETVESWMTTNNLNPR- 595 (936)
Q Consensus 522 g~~e~~l~~a~~~~dy~~ll~~yi~~~~~~~AL~~L~~~~----d~~~li~k~~~~Ll~-~~p~~ti~ll~~~~~ld~~- 595 (936)
-|..++..-....+-+...+++.+++ +..++...|+..++. .+++++...+.+.-+.++.
T Consensus 231 --------------a~~~l~~~~~~~~~~~~l~~~w~~lp~~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~~~~~ 296 (398)
T PRK10747 231 --------------AWIGLMDQAMADQGSEGLKRWWKNQSRKTRHQVALQVAMAEHLIECDDHDTAQQIILDGLKRQYDE 296 (398)
T ss_pred --------------HHHHHHHHHHHhcCHHHHHHHHHhCCHHHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCH
Confidence 01112222223334444555555443 235677778877775 4556666666433222221
Q ss_pred cchhHhhhcCCCCCCCCChHHHHHHHHHHHhhcCCCCHhHHHHHHHHhhcCCChHHHHHHHHHhhCCCCCCCCcccCChH
Q 002318 596 KLIPAMMRYSSEPHAKNETHEVIKYLEFCVHRLHNEDPGVHNLLLSLYAKQEDDSALLRFLQCKFGKGRENGPEFFYDPK 675 (936)
Q Consensus 596 ~li~~L~~~~~~~~~~~~~~~~~~YLe~li~~~~~~~~~~hn~ll~Ly~~~~~~~~Ll~fL~~~~~~~~~~~~~~~yd~~ 675 (936)
.++........ .....++..++......+ .++.++-.+-.++...++-.+-..+++..-. ..-+..
T Consensus 297 ~l~~l~~~l~~-----~~~~~al~~~e~~lk~~P-~~~~l~l~lgrl~~~~~~~~~A~~~le~al~--------~~P~~~ 362 (398)
T PRK10747 297 RLVLLIPRLKT-----NNPEQLEKVLRQQIKQHG-DTPLLWSTLGQLLMKHGEWQEASLAFRAALK--------QRPDAY 362 (398)
T ss_pred HHHHHHhhccC-----CChHHHHHHHHHHHhhCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--------cCCCHH
Confidence 12211111111 234668888888886655 5688888888898887766777788877611 001111
Q ss_pred HHHHHHHhcCcceeeehhhhccccHHHHHHHHH
Q 002318 676 YALRLCLKEKRMRACVHIYGMMSMHEEAVALAL 708 (936)
Q Consensus 676 ~aLrlc~~~~~~~~~v~L~~~~g~~~eAl~l~l 708 (936)
..+. ...++.++|+.++|.++.-
T Consensus 363 ~~~~----------La~~~~~~g~~~~A~~~~~ 385 (398)
T PRK10747 363 DYAW----------LADALDRLHKPEEAAAMRR 385 (398)
T ss_pred HHHH----------HHHHHHHcCCHHHHHHHHH
Confidence 1122 3346778888888877654
No 254
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=67.62 E-value=24 Score=31.93 Aligned_cols=48 Identities=21% Similarity=0.268 Sum_probs=39.6
Q ss_pred HHchhhHHHHHHhcCC-----hh--hHHHHHHHHHHHHHhcCCHHHHHHHHHHhc
Q 002318 371 YLDMKEYAAALANCRD-----PL--QRDQVYLVQAEAAFATKDFHRAASFYAKIN 418 (936)
Q Consensus 371 ll~~~~f~~Al~~~~~-----~~--~~~~I~~~~~~~L~~~g~y~~Aa~~y~~~~ 418 (936)
+++.|+|++|.+.++. |. .........|.-++..|+|++|...|.+..
T Consensus 12 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 66 (119)
T TIGR02795 12 VLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVV 66 (119)
T ss_pred HHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHH
Confidence 8889999999998753 22 235678889999999999999999998765
No 255
>PF14835 zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM7_B.
Probab=67.33 E-value=1.4 Score=36.06 Aligned_cols=34 Identities=21% Similarity=0.506 Sum_probs=18.2
Q ss_pred ccccccccchhhhhcccccccccccCCCCCCCCEEEEcCCChhHHHhHHHHH
Q 002318 832 RDEDCGVCRRKILVAGRDYRMARGYASVGPMAPFYVFPCGHAFHAQCLIAHV 883 (936)
Q Consensus 832 ~~~~C~~C~k~L~~~~~~~~~~~~~~~~~~~~~fvvFpCgH~fH~~CL~~~~ 883 (936)
..-+|+.|...+-. |+.++.|.|.|-+.|+.+.+
T Consensus 6 ~lLrCs~C~~~l~~------------------pv~l~~CeH~fCs~Ci~~~~ 39 (65)
T PF14835_consen 6 ELLRCSICFDILKE------------------PVCLGGCEHIFCSSCIRDCI 39 (65)
T ss_dssp HTTS-SSS-S--SS-------------------B---SSS--B-TTTGGGGT
T ss_pred HhcCCcHHHHHhcC------------------CceeccCccHHHHHHhHHhc
Confidence 34579999987665 88899999999999997654
No 256
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=67.17 E-value=83 Score=40.75 Aligned_cols=121 Identities=17% Similarity=0.255 Sum_probs=70.3
Q ss_pred EEecCCeEEEEeC-CCCCceeeE----------cCCCCCCccceeEEEeCCCCCeEEEEeecCCCccEEEEecCCC----
Q 002318 36 LGTSKGWLIRHDF-GAGDSYDID----------LSAGRPGEQSIHKVFVDPGGSHCIATIVGSGGAETFYTHAKWS---- 100 (936)
Q Consensus 36 l~~~~g~l~ridl-~~~~~~~~~----------l~~~~~~~~~i~~i~lDp~G~hlli~~~~~~~g~~~Y~~~~~~---- 100 (936)
=.+-++.|+.|+. +.++...++ +-++. .++|+ |.=.||+|-++ .-+.+-+.-...
T Consensus 94 WiTiDn~L~lWny~~~~e~~~~d~~shtIl~V~LvkPk------pgvFv-~~IqhlLvvaT---~~ei~ilgV~~~~~~~ 163 (1311)
T KOG1900|consen 94 WITIDNNLFLWNYESDNELAEYDGLSHTILKVGLVKPK------PGVFV-PEIQHLLVVAT---PVEIVILGVSFDEFTG 163 (1311)
T ss_pred EEEeCCeEEEEEcCCCCccccccchhhhheeeeeecCC------CCcch-hhhheeEEecc---cceEEEEEEEeccccC
Confidence 3455669999999 655554432 22222 23565 55678777766 455554331110
Q ss_pred ------CceeccCCCCceEEEEEecCCCCCCCCcceEEEEcCCCcEEEEEEecCCcccce-ee--------------EEe
Q 002318 101 ------KPRVLSKLKGLVVNAVAWNRQQITEASTKEIILGTDTGQLHEMAVDEKDKREKY-IK--------------LLF 159 (936)
Q Consensus 101 ------k~k~L~klkg~~I~sVaw~~~~~~~~st~~iLiGt~~G~i~e~~i~~~~~~~~~-~k--------------~v~ 159 (936)
.--.++ ..|..|.+|+-. .+|+|.+|+++|.|||..-...+++... ++ .+.
T Consensus 164 ~~~~f~~~~~i~-~dg~~V~~I~~t-------~nGRIF~~G~dg~lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~~ 235 (1311)
T KOG1900|consen 164 ELSIFNTSFKIS-VDGVSVNCITYT-------ENGRIFFAGRDGNLYELVYQAEDGWFGSRCRKICLTKSVLSSLVPSLL 235 (1311)
T ss_pred cccccccceeee-cCCceEEEEEec-------cCCcEEEeecCCCEEEEEEeccCchhhcccccccCchhHHHHhhhhhh
Confidence 001122 257888888833 4689999999999999877655433222 22 233
Q ss_pred eeC-CCCCceeeEEEE
Q 002318 160 ELN-ELPEAFMGLQME 174 (936)
Q Consensus 160 ~l~-~~~~~I~gi~~~ 174 (936)
+++ ...+||.-|.+.
T Consensus 236 ~~~~~~~dpI~qi~ID 251 (1311)
T KOG1900|consen 236 SVPGSSKDPIRQITID 251 (1311)
T ss_pred cCCCCCCCcceeeEec
Confidence 444 223578888886
No 257
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=66.78 E-value=1.9e+02 Score=34.56 Aligned_cols=151 Identities=11% Similarity=0.113 Sum_probs=97.0
Q ss_pred eeEEEEeCCEEEEEecCCeEEEEeC-CCCCceeeEcCCCCCCccceeEEEeCCCCCeEEEEeecCCCccEEEE--ecCCC
Q 002318 24 ITCMSAGNDVIVLGTSKGWLIRHDF-GAGDSYDIDLSAGRPGEQSIHKVFVDPGGSHCIATIVGSGGAETFYT--HAKWS 100 (936)
Q Consensus 24 i~~l~v~~n~l~l~~~~g~l~ridl-~~~~~~~~~l~~~~~~~~~i~~i~lDp~G~hlli~~~~~~~g~~~Y~--~~~~~ 100 (936)
...+..-.|+++.|..++.|-.++. ..+.|..++-| .+-|+.|-++||--+++.+++ |-..--+ ...|.
T Consensus 60 a~kfiaRknWiv~GsDD~~IrVfnynt~ekV~~FeAH-----~DyIR~iavHPt~P~vLtsSD---Dm~iKlW~we~~wa 131 (794)
T KOG0276|consen 60 AAKFIARKNWIVTGSDDMQIRVFNYNTGEKVKTFEAH-----SDYIRSIAVHPTLPYVLTSSD---DMTIKLWDWENEWA 131 (794)
T ss_pred hheeeeccceEEEecCCceEEEEecccceeeEEeecc-----ccceeeeeecCCCCeEEecCC---ccEEEEeeccCcee
Confidence 3456677899999999999999999 88999999998 478999999999999999887 5544333 33443
Q ss_pred CceeccCCCCceEEEEEecCCCCCCCCcceEEEEcCCCcEEEEEEecCCcccceeeEEeeeCCCCCceeeEEEEeeccCC
Q 002318 101 KPRVLSKLKGLVVNAVAWNRQQITEASTKEIILGTDTGQLHEMAVDEKDKREKYIKLLFELNELPEAFMGLQMETASLSN 180 (936)
Q Consensus 101 k~k~L~klkg~~I~sVaw~~~~~~~~st~~iLiGt~~G~i~e~~i~~~~~~~~~~k~v~~l~~~~~~I~gi~~~~~~~~~ 180 (936)
..+.-. -.-|.|-+||+||. ++..|.-++-++.|=--.+... ...+.|.+-+..|..|.+-. .+
T Consensus 132 ~~qtfe-GH~HyVMqv~fnPk-----D~ntFaS~sLDrTVKVWslgs~-------~~nfTl~gHekGVN~Vdyy~---~g 195 (794)
T KOG0276|consen 132 CEQTFE-GHEHYVMQVAFNPK-----DPNTFASASLDRTVKVWSLGSP-------HPNFTLEGHEKGVNCVDYYT---GG 195 (794)
T ss_pred eeeEEc-CcceEEEEEEecCC-----CccceeeeeccccEEEEEcCCC-------CCceeeeccccCcceEEecc---CC
Confidence 322221 13478999999953 2336777777765544444332 11123322122366665542 23
Q ss_pred CceEEEEEECCCeEEEEe
Q 002318 181 GTRYYVMAVTPTRLYSFT 198 (936)
Q Consensus 181 ~~~~~i~ast~~rly~f~ 198 (936)
++-++|-++.+..+--|+
T Consensus 196 dkpylIsgaDD~tiKvWD 213 (794)
T KOG0276|consen 196 DKPYLISGADDLTIKVWD 213 (794)
T ss_pred CcceEEecCCCceEEEee
Confidence 445677666655444453
No 258
>PRK11189 lipoprotein NlpI; Provisional
Probab=66.65 E-value=1.5e+02 Score=32.54 Aligned_cols=78 Identities=10% Similarity=0.035 Sum_probs=46.8
Q ss_pred HHchhhHHHHHHhcCC----hhhHHHHHHHHHHHHHhcCCHHHHHHHHHHhcCC-CChHHH----HHHhcCcChHHHHHH
Q 002318 371 YLDMKEYAAALANCRD----PLQRDQVYLVQAEAAFATKDFHRAASFYAKINYI-LSFEEI----TLKFISVSEQDALRT 441 (936)
Q Consensus 371 ll~~~~f~~Al~~~~~----~~~~~~I~~~~~~~L~~~g~y~~Aa~~y~~~~~~-~~~E~v----~lkFl~~~~~~~L~~ 441 (936)
|...|++++|+...+. ......+....|..+...|+|++|...|.+.... ..+... ..-+...++.+.-..
T Consensus 74 ~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~ 153 (296)
T PRK11189 74 YDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAYLNRGIALYYGGRYELAQD 153 (296)
T ss_pred HHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 4556777777765432 1123467788899999999999999999887511 222222 222334455555555
Q ss_pred HHHHHhh
Q 002318 442 FLLRKLD 448 (936)
Q Consensus 442 YL~~~l~ 448 (936)
.+..-+.
T Consensus 154 ~~~~al~ 160 (296)
T PRK11189 154 DLLAFYQ 160 (296)
T ss_pred HHHHHHH
Confidence 5554444
No 259
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=66.51 E-value=44 Score=36.35 Aligned_cols=89 Identities=11% Similarity=0.124 Sum_probs=58.3
Q ss_pred eeEEEeCCCCCeEEEEeecCCCccEEEEecCCCC-ceeccCCCCceEEEEEecCCCCCCCCcceEEE-EcCCCcEEEEEE
Q 002318 68 IHKVFVDPGGSHCIATIVGSGGAETFYTHAKWSK-PRVLSKLKGLVVNAVAWNRQQITEASTKEIIL-GTDTGQLHEMAV 145 (936)
Q Consensus 68 i~~i~lDp~G~hlli~~~~~~~g~~~Y~~~~~~k-~k~L~klkg~~I~sVaw~~~~~~~~st~~iLi-Gt~~G~i~e~~i 145 (936)
-..+-+.+.|.|+.+..+ +|.+.-+...... .|.|+- .-++|+|++|.+. |+.|+ .+.+-.|-.-.+
T Consensus 26 a~~~~Fs~~G~~lAvGc~---nG~vvI~D~~T~~iar~lsa-H~~pi~sl~WS~d-------gr~LltsS~D~si~lwDl 94 (405)
T KOG1273|consen 26 AECCQFSRWGDYLAVGCA---NGRVVIYDFDTFRIARMLSA-HVRPITSLCWSRD-------GRKLLTSSRDWSIKLWDL 94 (405)
T ss_pred cceEEeccCcceeeeecc---CCcEEEEEccccchhhhhhc-cccceeEEEecCC-------CCEeeeecCCceeEEEec
Confidence 356778899999999888 8988766655443 333432 3469999999842 34444 455666665555
Q ss_pred ecCCcccceeeEEeeeCCCCCceeeEEEEe
Q 002318 146 DEKDKREKYIKLLFELNELPEAFMGLQMET 175 (936)
Q Consensus 146 ~~~~~~~~~~k~v~~l~~~~~~I~gi~~~~ 175 (936)
..++ -++++ .++ +||.|.+|..
T Consensus 95 ~~gs----~l~ri-rf~---spv~~~q~hp 116 (405)
T KOG1273|consen 95 LKGS----PLKRI-RFD---SPVWGAQWHP 116 (405)
T ss_pred cCCC----ceeEE-Ecc---Cccceeeecc
Confidence 4431 23332 555 6899999974
No 260
>PRK05560 DNA gyrase subunit A; Validated
Probab=66.40 E-value=3.1e+02 Score=34.82 Aligned_cols=158 Identities=13% Similarity=0.141 Sum_probs=87.2
Q ss_pred CceeEEEEe----CCEEEEEecCCeEEEEeC-C--CCC---ceeeEcCCCCCCccceeEEEeCCCCCeEEEEeecCCCcc
Q 002318 22 GVITCMSAG----NDVIVLGTSKGWLIRHDF-G--AGD---SYDIDLSAGRPGEQSIHKVFVDPGGSHCIATIVGSGGAE 91 (936)
Q Consensus 22 ~~i~~l~v~----~n~l~l~~~~g~l~ridl-~--~~~---~~~~~l~~~~~~~~~i~~i~lDp~G~hlli~~~~~~~g~ 91 (936)
..+.++.+. +..+++.+.+|.+-|+++ . ... ..-+.+. .++.+..++.-.+..++++-|+ +|.
T Consensus 591 ~Iv~~i~~~~~~~e~~lvlvTk~GyiKRi~l~~~~~~~r~G~~~ikLk----e~D~lv~v~~~~~~d~lll~T~---~Gr 663 (805)
T PRK05560 591 KITAILPVREFDDDKYLFFATKNGTVKKTSLSEFSNIRSNGIIAINLD----EGDELIGVRLTDGDDDILLATK---NGK 663 (805)
T ss_pred eEEEEEeccCCCCCCEEEEEeCCCEEEEEEhHHhhhcccCCceeeccC----CCCEEEEEEEeCCCCEEEEEEC---CCc
Confidence 345555555 358999999999999987 2 111 1111222 1356666666566677888888 798
Q ss_pred EEEEecCC-------CCceeccCCC-C-ceEEEEEecCCCCCCCCcceEEEEcCCCcEEEEEEecC---CcccceeeEEe
Q 002318 92 TFYTHAKW-------SKPRVLSKLK-G-LVVNAVAWNRQQITEASTKEIILGTDTGQLHEMAVDEK---DKREKYIKLLF 159 (936)
Q Consensus 92 ~~Y~~~~~-------~k~k~L~klk-g-~~I~sVaw~~~~~~~~st~~iLiGt~~G~i~e~~i~~~---~~~~~~~k~v~ 159 (936)
.|.+.... .+...+.+|+ | ..+..+.+++ ....+++.|++|.+..+.+..- .+.-+... .+
T Consensus 664 ~~r~~~~eIp~~gr~~~Gv~~i~L~~~E~Vv~~~~v~~------~~~~il~vTk~G~iKr~~l~e~~~~~R~~kG~~-~l 736 (805)
T PRK05560 664 AIRFPESDVRPMGRTARGVRGIKLREGDEVVSMDVVRE------DSQEILTVTENGYGKRTPVSEYRLQGRGGKGVI-TI 736 (805)
T ss_pred EEEEEhhhcCccCcccCCcccccCCCCCEEEEEEEEcC------CCcEEEEEEeCCeEEEEEHHHhhccCCCCCcEE-ee
Confidence 88776422 1222233333 2 2344444441 1126999999998888876421 11111222 23
Q ss_pred eeCCCCCceeeEEEEeeccCCCceEEEEEECCCeEEEEe
Q 002318 160 ELNELPEAFMGLQMETASLSNGTRYYVMAVTPTRLYSFT 198 (936)
Q Consensus 160 ~l~~~~~~I~gi~~~~~~~~~~~~~~i~ast~~rly~f~ 198 (936)
.+.+.++.+.++.... ++ ..++++|...++..|.
T Consensus 737 kl~~~~d~lv~v~~v~----~~-~~v~i~T~~G~~lrf~ 770 (805)
T PRK05560 737 KITEKNGKLVGALPVD----DD-DEIMLITDSGKLIRTR 770 (805)
T ss_pred eccCCCCeEEEEEEec----CC-CeEEEEecCCeEEEEE
Confidence 4543223455544331 22 3466667777777674
No 261
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=65.99 E-value=14 Score=42.04 Aligned_cols=69 Identities=23% Similarity=0.203 Sum_probs=49.5
Q ss_pred CCCceeEEEEe--CCEEEEEecCCeEEEEeC-CCCCceeeEcCCCCCCccceeEEEeCCCCCeEEEEeecCCCccEEEEe
Q 002318 20 GRGVITCMSAG--NDVIVLGTSKGWLIRHDF-GAGDSYDIDLSAGRPGEQSIHKVFVDPGGSHCIATIVGSGGAETFYTH 96 (936)
Q Consensus 20 ~~~~i~~l~v~--~n~l~l~~~~g~l~ridl-~~~~~~~~~l~~~~~~~~~i~~i~lDp~G~hlli~~~~~~~g~~~Y~~ 96 (936)
+.+.+..|..+ |-++++|-.+|+|-.|.. -++-..++..+ .+.|..|-+||+|++++-+-- +..+=.|.
T Consensus 250 ~~G~~~vm~qNP~NaVih~GhsnGtVSlWSP~skePLvKiLcH-----~g~V~siAv~~~G~YMaTtG~---Dr~~kIWD 321 (545)
T KOG1272|consen 250 GAGRTDVMKQNPYNAVIHLGHSNGTVSLWSPNSKEPLVKILCH-----RGPVSSIAVDRGGRYMATTGL---DRKVKIWD 321 (545)
T ss_pred cCCccchhhcCCccceEEEcCCCceEEecCCCCcchHHHHHhc-----CCCcceEEECCCCcEEeeccc---ccceeEee
Confidence 33455555554 568899999999999988 55656666666 367999999999998876644 44444444
No 262
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=65.51 E-value=3.7e+02 Score=34.11 Aligned_cols=106 Identities=20% Similarity=0.225 Sum_probs=60.4
Q ss_pred cceEEEEcCCCcEEEEEEecCCcccceeeEEeeeCCCCCceeeEEEEeeccCCCceEEEEEEC--CCeEEEEecCCchHH
Q 002318 128 TKEIILGTDTGQLHEMAVDEKDKREKYIKLLFELNELPEAFMGLQMETASLSNGTRYYVMAVT--PTRLYSFTGFGSLDT 205 (936)
Q Consensus 128 t~~iLiGt~~G~i~e~~i~~~~~~~~~~k~v~~l~~~~~~I~gi~~~~~~~~~~~~~~i~ast--~~rly~f~~~~~l~~ 205 (936)
..-.|+++.+|.++.+.++-..+.....|.+ .++..| ++ +.++..++ +-.++|.+ |.-+|-+.|+--+..
T Consensus 595 ~~yLlvalgdG~l~~fv~d~~tg~lsd~Kk~-~lGt~P--~~---Lr~f~sk~--~t~vfa~sdrP~viY~~n~kLv~sp 666 (1096)
T KOG1897|consen 595 IHYLLVALGDGALLYFVLDINTGQLSDRKKV-TLGTQP--IS---LRTFSSKS--RTAVFALSDRPTVIYSSNGKLVYSP 666 (1096)
T ss_pred ceEEEEEcCCceEEEEEEEcccceEcccccc-ccCCCC--cE---EEEEeeCC--ceEEEEeCCCCEEEEecCCcEEEec
Confidence 3478889999999999987653323333433 455433 33 33333222 34444444 888886666421110
Q ss_pred HHhhhhcccccccccCCCcCCCcceeeeccCCCceEEEeecCceEEEEecc
Q 002318 206 VFASYLDRAVHFMELPGEILNSELHFFIKQRRAVHFAWLSGAGIYHGGLNF 256 (936)
Q Consensus 206 ~f~~~~~~~~~~~el~~~~~~s~~~~~~~~~~~~~faW~t~~gi~~g~i~~ 256 (936)
.+..|+-. ..-+....+|..++-.++.++.+|.++.
T Consensus 667 ---------ls~kev~~------~c~f~s~a~~d~l~~~~~~~l~i~tid~ 702 (1096)
T KOG1897|consen 667 ---------LSLKEVNH------MCPFNSDAYPDSLASANGGALTIGTIDE 702 (1096)
T ss_pred ---------cchHHhhh------hcccccccCCceEEEecCCceEEEEecc
Confidence 01111111 1112345678999999999999999985
No 263
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=65.48 E-value=1.9e+02 Score=34.42 Aligned_cols=50 Identities=14% Similarity=0.151 Sum_probs=38.5
Q ss_pred HHHHchhhHHHHHHhcCC------------hhhHHHHHHHHHHHHHhcCCHHHHHHHHHHhc
Q 002318 369 KVYLDMKEYAAALANCRD------------PLQRDQVYLVQAEAAFATKDFHRAASFYAKIN 418 (936)
Q Consensus 369 ~~ll~~~~f~~Al~~~~~------------~~~~~~I~~~~~~~L~~~g~y~~Aa~~y~~~~ 418 (936)
..|+..++|++|..+-+. ......++..-|.-+...|+|.+|..+|-+..
T Consensus 249 ~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al 310 (508)
T KOG1840|consen 249 LVYRSLGKYDEAVNLYEEALTIREEVFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERAL 310 (508)
T ss_pred HHHHHhccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHH
Confidence 458888888888877542 23566788888888899999999988877654
No 264
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=65.24 E-value=2.2e+02 Score=31.30 Aligned_cols=126 Identities=13% Similarity=0.207 Sum_probs=85.1
Q ss_pred CcCCcceehhHHHHHhhcCCCceeEEEEeCCEEEEE---ecCCeEEEEeC---CCCCceeeEcCCCCCCccceeEEEeCC
Q 002318 2 DLMRQVFQVDVLERYAAKGRGVITCMSAGNDVIVLG---TSKGWLIRHDF---GAGDSYDIDLSAGRPGEQSIHKVFVDP 75 (936)
Q Consensus 2 ~~~~~~f~~~~~~~~~~~~~~~i~~l~v~~n~l~l~---~~~g~l~ridl---~~~~~~~~~l~~~~~~~~~i~~i~lDp 75 (936)
||-+.++.+|++.. |+| .++++=..+..+++ .+.|.|=..|| .++....|.-| ++.|..+-+.-
T Consensus 122 ~n~k~l~~~et~~N--PkG---lC~~~~~~~k~~LafPg~k~GqvQi~dL~~~~~~~p~~I~AH-----~s~Iacv~Ln~ 191 (346)
T KOG2111|consen 122 DNPKLLHVIETRSN--PKG---LCSLCPTSNKSLLAFPGFKTGQVQIVDLASTKPNAPSIINAH-----DSDIACVALNL 191 (346)
T ss_pred CChhheeeeecccC--CCc---eEeecCCCCceEEEcCCCccceEEEEEhhhcCcCCceEEEcc-----cCceeEEEEcC
Confidence 56677777777653 445 78888777766554 57899999999 23223456666 57899999999
Q ss_pred CCCeEEEEeecCCCccEEEE-ec-CCCCceeccCCCC---ceEEEEEecCCCCCCCCcceEEEEcCCCcEEEEEEecC
Q 002318 76 GGSHCIATIVGSGGAETFYT-HA-KWSKPRVLSKLKG---LVVNAVAWNRQQITEASTKEIILGTDTGQLHEMAVDEK 148 (936)
Q Consensus 76 ~G~hlli~~~~~~~g~~~Y~-~~-~~~k~k~L~klkg---~~I~sVaw~~~~~~~~st~~iLiGt~~G~i~e~~i~~~ 148 (936)
.|.-+..++. .|...=+ +. .-.+...+. +| -.|-|+||+++. .-+-+.+++|.|.-..+...
T Consensus 192 ~Gt~vATaSt---kGTLIRIFdt~~g~~l~E~R--RG~d~A~iy~iaFSp~~------s~LavsSdKgTlHiF~l~~~ 258 (346)
T KOG2111|consen 192 QGTLVATAST---KGTLIRIFDTEDGTLLQELR--RGVDRADIYCIAFSPNS------SWLAVSSDKGTLHIFSLRDT 258 (346)
T ss_pred CccEEEEecc---CcEEEEEEEcCCCcEeeeee--cCCchheEEEEEeCCCc------cEEEEEcCCCeEEEEEeecC
Confidence 9987777777 6777533 22 222333344 34 489999999532 14445567799988888654
No 265
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=64.70 E-value=21 Score=36.35 Aligned_cols=50 Identities=24% Similarity=0.163 Sum_probs=32.1
Q ss_pred HHHHchhhHHHHHHhcCCh---hhHHHHHHHHHHHHHhcCCHHHHHHHHHHhc
Q 002318 369 KVYLDMKEYAAALANCRDP---LQRDQVYLVQAEAAFATKDFHRAASFYAKIN 418 (936)
Q Consensus 369 ~~ll~~~~f~~Al~~~~~~---~~~~~I~~~~~~~L~~~g~y~~Aa~~y~~~~ 418 (936)
+++++.|+||+||....+. .-...+....||-|+.+|+=.+|-.-|.+..
T Consensus 134 rvq~q~~k~D~AL~~L~t~~~~~w~~~~~elrGDill~kg~k~~Ar~ay~kAl 186 (207)
T COG2976 134 RVQLQQKKADAALKTLDTIKEESWAAIVAELRGDILLAKGDKQEARAAYEKAL 186 (207)
T ss_pred HHHHHhhhHHHHHHHHhccccccHHHHHHHHhhhHHHHcCchHHHHHHHHHHH
Confidence 4566777777777765542 2244556666777777777777777766654
No 266
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=64.67 E-value=1.1e+02 Score=34.50 Aligned_cols=30 Identities=13% Similarity=0.283 Sum_probs=24.3
Q ss_pred cCCCceeEEEEeCCEEEEEecCCeEEEEeC
Q 002318 19 KGRGVITCMSAGNDVIVLGTSKGWLIRHDF 48 (936)
Q Consensus 19 ~~~~~i~~l~v~~n~l~l~~~~g~l~ridl 48 (936)
.+...+.|+-..+..|..|-.+|++-.|+.
T Consensus 144 ~g~~k~vaf~~~gs~latgg~dg~lRv~~~ 173 (398)
T KOG0771|consen 144 FGQQKVVAFNGDGSKLATGGTDGTLRVWEW 173 (398)
T ss_pred cCcceEEEEcCCCCEeeeccccceEEEEec
Confidence 455567777777789999999999999995
No 267
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=64.63 E-value=3.4e+02 Score=33.32 Aligned_cols=66 Identities=11% Similarity=0.208 Sum_probs=50.5
Q ss_pred ceeEEEEeCCEE--EEEecCCeEEEEeC-CCCCceeeEcCCCCCCccceeEEEeCCCCCeEEEEeecCCCccEEEEe
Q 002318 23 VITCMSAGNDVI--VLGTSKGWLIRHDF-GAGDSYDIDLSAGRPGEQSIHKVFVDPGGSHCIATIVGSGGAETFYTH 96 (936)
Q Consensus 23 ~i~~l~v~~n~l--~l~~~~g~l~ridl-~~~~~~~~~l~~~~~~~~~i~~i~lDp~G~hlli~~~~~~~g~~~Y~~ 96 (936)
.+||+.++.+.+ ++|..+|.|-.+|+ ..+....+..| ...|+-+-.|..|.-++..+. ||+...+.
T Consensus 67 evt~l~~~~d~l~lAVGYaDGsVqif~~~s~~~~~tfngH-----K~AVt~l~fd~~G~rlaSGsk---Dt~IIvwD 135 (888)
T KOG0306|consen 67 EVTCLRSSDDILLLAVGYADGSVQIFSLESEEILITFNGH-----KAAVTTLKFDKIGTRLASGSK---DTDIIVWD 135 (888)
T ss_pred eEEEeeccCCcceEEEEecCceEEeeccCCCceeeeeccc-----ccceEEEEEcccCceEeecCC---CccEEEEE
Confidence 599999999988 99999999999999 44333333334 468999999999987777666 77765544
No 268
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=64.37 E-value=46 Score=38.72 Aligned_cols=113 Identities=16% Similarity=0.187 Sum_probs=72.2
Q ss_pred ceeEEE---EeCCEEEEEecCCeEEEEeC-CCCCce-----------eeEcCCC------------CCCccceeEEEeCC
Q 002318 23 VITCMS---AGNDVIVLGTSKGWLIRHDF-GAGDSY-----------DIDLSAG------------RPGEQSIHKVFVDP 75 (936)
Q Consensus 23 ~i~~l~---v~~n~l~l~~~~g~l~ridl-~~~~~~-----------~~~l~~~------------~~~~~~i~~i~lDp 75 (936)
.+||+. -..+....+-.+|.+|.+|. .+.... .+.+... .-+.+.|+.++..|
T Consensus 221 svT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~p~~~~~k~~~~f~i~t~ksk~~rNPv~~w~~~~g~in~f~FS~ 300 (636)
T KOG2394|consen 221 SVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATAPSYQALKDGDQFAILTSKSKKTRNPVARWHIGEGSINEFAFSP 300 (636)
T ss_pred ceEEEEEEeCCCceEEEEEecCceEEeeccccccCCCCcccccCCCCeeEEeeeeccccCCccceeEeccccccceeEcC
Confidence 466654 34556677778899999987 333221 1111110 00246899999999
Q ss_pred CCCeEEEEeecCCCccEEEEecCCCCceeccC-CCCceEEEEEecCCCCCCCCcceEEEEcCCCcEEEEEE
Q 002318 76 GGSHCIATIVGSGGAETFYTHAKWSKPRVLSK-LKGLVVNAVAWNRQQITEASTKEIILGTDTGQLHEMAV 145 (936)
Q Consensus 76 ~G~hlli~~~~~~~g~~~Y~~~~~~k~k~L~k-lkg~~I~sVaw~~~~~~~~st~~iLiGt~~G~i~e~~i 145 (936)
.|.||...+. +|-.-..|....+..-+.| ..| -..||+|.++ .+-|++|.+|-.+=-..+
T Consensus 301 DG~~LA~VSq---DGfLRvF~fdt~eLlg~mkSYFG-GLLCvcWSPD------GKyIvtGGEDDLVtVwSf 361 (636)
T KOG2394|consen 301 DGKYLATVSQ---DGFLRIFDFDTQELLGVMKSYFG-GLLCVCWSPD------GKYIVTGGEDDLVTVWSF 361 (636)
T ss_pred CCceEEEEec---CceEEEeeccHHHHHHHHHhhcc-ceEEEEEcCC------ccEEEecCCcceEEEEEe
Confidence 9999999998 8977666665543333222 122 5789999953 458999998865444433
No 269
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=64.07 E-value=37 Score=40.68 Aligned_cols=115 Identities=12% Similarity=0.030 Sum_probs=71.2
Q ss_pred eeEEEEe---CCEEEEEecCCeEEEEeCCCCCcee---eEcC-CCCCCccceeEEEeCCCCCeEEEEeecCCCccEEEEe
Q 002318 24 ITCMSAG---NDVIVLGTSKGWLIRHDFGAGDSYD---IDLS-AGRPGEQSIHKVFVDPGGSHCIATIVGSGGAETFYTH 96 (936)
Q Consensus 24 i~~l~v~---~n~l~l~~~~g~l~ridl~~~~~~~---~~l~-~~~~~~~~i~~i~lDp~G~hlli~~~~~~~g~~~Y~~ 96 (936)
++++... .+.+++||.-|.|++.+-.+-.... ++.+ ......++|+-|-..|.+.-++.++- +..+--++
T Consensus 350 ~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~~~~~~~~~~~~~~~~~h~g~v~~v~~nPF~~k~fls~g---DW~vriWs 426 (555)
T KOG1587|consen 350 ATSLKFEPTDPNHFIVGTEEGKVYKGCRKGYTPAPEVSYKGHSTFITHIGPVYAVSRNPFYPKNFLSVG---DWTVRIWS 426 (555)
T ss_pred eeeEeeccCCCceEEEEcCCcEEEEEeccCCcccccccccccccccccCcceEeeecCCCccceeeeec---cceeEecc
Confidence 5555554 5678999999999997662211111 1111 11223578999999999987777664 55555555
Q ss_pred cC-CCCceeccCCC-Cc-eEEEEEecCCCCCCCCcceEEEEcCCCcEEEEEEecC
Q 002318 97 AK-WSKPRVLSKLK-GL-VVNAVAWNRQQITEASTKEIILGTDTGQLHEMAVDEK 148 (936)
Q Consensus 97 ~~-~~k~k~L~klk-g~-~I~sVaw~~~~~~~~st~~iLiGt~~G~i~e~~i~~~ 148 (936)
.. ... +|.-++ .. .+++|||.+.. -.-|.+++.+|.|+.-.+..+
T Consensus 427 ~~~~~~--Pl~~~~~~~~~v~~vaWSptr-----pavF~~~d~~G~l~iWDLl~~ 474 (555)
T KOG1587|consen 427 EDVIAS--PLLSLDSSPDYVTDVAWSPTR-----PAVFATVDGDGNLDIWDLLQD 474 (555)
T ss_pred ccCCCC--cchhhhhccceeeeeEEcCcC-----ceEEEEEcCCCceehhhhhcc
Confidence 44 333 332222 23 39999999532 237888888998888766543
No 270
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=63.75 E-value=1.5e+02 Score=31.61 Aligned_cols=150 Identities=11% Similarity=0.102 Sum_probs=85.9
Q ss_pred EEEeCCEEEEEecCCeEEEEeC-CCCCceeeEcCCCCCCccceeEEEeCCCCCeEEEEeecCCCccEEEEecCCCCceec
Q 002318 27 MSAGNDVIVLGTSKGWLIRHDF-GAGDSYDIDLSAGRPGEQSIHKVFVDPGGSHCIATIVGSGGAETFYTHAKWSKPRVL 105 (936)
Q Consensus 27 l~v~~n~l~l~~~~g~l~ridl-~~~~~~~~~l~~~~~~~~~i~~i~lDp~G~hlli~~~~~~~g~~~Y~~~~~~k~k~L 105 (936)
+||+--..|-...+|+|+.+|+ +|..+.++.--.. .+.+-.+-=.+..++.++... |+|..--+.. ..+.++|
T Consensus 24 LavAt~q~yGl~G~G~L~ile~~~~~gi~e~~s~d~---~D~LfdV~Wse~~e~~~~~a~--GDGSLrl~d~-~~~s~Pi 97 (311)
T KOG0277|consen 24 LAVATAQHYGLAGNGRLFILEVTDPKGIQECQSYDT---EDGLFDVAWSENHENQVIAAS--GDGSLRLFDL-TMPSKPI 97 (311)
T ss_pred hheeehhhcccccCceEEEEecCCCCCeEEEEeeec---ccceeEeeecCCCcceEEEEe--cCceEEEecc-CCCCcch
Confidence 3444444455557899999999 6777665431111 234556666677777665543 3787755552 3344577
Q ss_pred cCCCC--ceEEEEEecCCCCCCCCcceEEEEcCCCcEEEEEEecCCcccceeeEEeeeCCCCCceeeEEEEeeccCCCce
Q 002318 106 SKLKG--LVVNAVAWNRQQITEASTKEIILGTDTGQLHEMAVDEKDKREKYIKLLFELNELPEAFMGLQMETASLSNGTR 183 (936)
Q Consensus 106 ~klkg--~~I~sVaw~~~~~~~~st~~iLiGt~~G~i~e~~i~~~~~~~~~~k~v~~l~~~~~~I~gi~~~~~~~~~~~~ 183 (936)
.++|- ..|-||-||.- ....+|.++=+|.|=.- .+. + .+++.+ ..+-..-|.+..|.. ...+
T Consensus 98 ~~~kEH~~EV~Svdwn~~-----~r~~~ltsSWD~TiKLW--~~~-r-~~Sv~T---f~gh~~~Iy~a~~sp----~~~n 161 (311)
T KOG0277|consen 98 HKFKEHKREVYSVDWNTV-----RRRIFLTSSWDGTIKLW--DPN-R-PNSVQT---FNGHNSCIYQAAFSP----HIPN 161 (311)
T ss_pred hHHHhhhhheEEeccccc-----cceeEEeeccCCceEee--cCC-C-CcceEe---ecCCccEEEEEecCC----CCCC
Confidence 77765 48999999932 23567777667865332 221 1 122222 333224467777763 2235
Q ss_pred EEEEEECCCeEEEEe
Q 002318 184 YYVMAVTPTRLYSFT 198 (936)
Q Consensus 184 ~~i~ast~~rly~f~ 198 (936)
.+.-+|++..+--|.
T Consensus 162 lfas~Sgd~~l~lwd 176 (311)
T KOG0277|consen 162 LFASASGDGTLRLWD 176 (311)
T ss_pred eEEEccCCceEEEEE
Confidence 777777766555554
No 271
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=63.47 E-value=2.1e+02 Score=32.88 Aligned_cols=30 Identities=17% Similarity=0.327 Sum_probs=24.3
Q ss_pred ceEEEEEecCCCCCCCCcceEEEEcCCCcEEEEEEec
Q 002318 111 LVVNAVAWNRQQITEASTKEIILGTDTGQLHEMAVDE 147 (936)
Q Consensus 111 ~~I~sVaw~~~~~~~~st~~iLiGt~~G~i~e~~i~~ 147 (936)
-.|.|||+-+ ...|+.|+.+|.|+.-.+..
T Consensus 328 ~sidcv~~In-------~~HfvsGSdnG~IaLWs~~K 357 (479)
T KOG0299|consen 328 GSIDCVAFIN-------DEHFVSGSDNGSIALWSLLK 357 (479)
T ss_pred CCeeeEEEec-------ccceeeccCCceEEEeeecc
Confidence 3799999973 23899999999999887754
No 272
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=63.06 E-value=64 Score=35.35 Aligned_cols=102 Identities=14% Similarity=0.138 Sum_probs=70.7
Q ss_pred CceeEEEEeCCEEEEEecC----CeEEEEeCCCCCceeeEcCCCCCCccceeEEEeCCCCCeEEEEeecCCCccEEEEec
Q 002318 22 GVITCMSAGNDVIVLGTSK----GWLIRHDFGAGDSYDIDLSAGRPGEQSIHKVFVDPGGSHCIATIVGSGGAETFYTHA 97 (936)
Q Consensus 22 ~~i~~l~v~~n~l~l~~~~----g~l~ridl~~~~~~~~~l~~~~~~~~~i~~i~lDp~G~hlli~~~~~~~g~~~Y~~~ 97 (936)
-.+.-+|.+.+--+++|.| +.|-.+|++.-++.-+-+. ..+|.-.--||+--.++|||. ....|++..
T Consensus 319 ~g~g~lafs~Ds~y~aTrnd~~PnalW~Wdlq~l~l~avLiQ-----k~piraf~WdP~~prL~vctg---~srLY~W~p 390 (447)
T KOG4497|consen 319 CGAGKLAFSCDSTYAATRNDKYPNALWLWDLQNLKLHAVLIQ-----KHPIRAFEWDPGRPRLVVCTG---KSRLYFWAP 390 (447)
T ss_pred cccceeeecCCceEEeeecCCCCceEEEEechhhhhhhhhhh-----ccceeEEEeCCCCceEEEEcC---CceEEEEcC
Confidence 3477889999999999988 4588889955544433332 246666666999999999997 445566666
Q ss_pred CCCCceeccCCCCceEEEEEecCCCCCCCCcceEEEEcCCC
Q 002318 98 KWSKPRVLSKLKGLVVNAVAWNRQQITEASTKEIILGTDTG 138 (936)
Q Consensus 98 ~~~k~k~L~klkg~~I~sVaw~~~~~~~~st~~iLiGt~~G 138 (936)
+....-..++ +|..|.++.|+-+. ..|++-+++.
T Consensus 391 sg~~~V~vP~-~GF~i~~l~W~~~g------~~i~l~~kDa 424 (447)
T KOG4497|consen 391 SGPRVVGVPK-KGFNIQKLQWLQPG------EFIVLCGKDA 424 (447)
T ss_pred CCceEEecCC-CCceeeeEEecCCC------cEEEEEcCCc
Confidence 6655445555 89999999999331 1355555554
No 273
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=62.96 E-value=1.8e+02 Score=33.26 Aligned_cols=103 Identities=13% Similarity=0.097 Sum_probs=58.1
Q ss_pred eEEEEeCCEEEEEecCCeEEEEeC-CCCCceeeEcCCCCCCccceeEEEeCCCCCeEEEEeecCCCccEEEEecCCCCce
Q 002318 25 TCMSAGNDVIVLGTSKGWLIRHDF-GAGDSYDIDLSAGRPGEQSIHKVFVDPGGSHCIATIVGSGGAETFYTHAKWSKPR 103 (936)
Q Consensus 25 ~~l~v~~n~l~l~~~~g~l~ridl-~~~~~~~~~l~~~~~~~~~i~~i~lDp~G~hlli~~~~~~~g~~~Y~~~~~~k~k 103 (936)
.+-++.++.++++..+|.++.+|. .++..-+.++... ..+- ..|.++++.+. +|..+-++...-+..
T Consensus 250 ~sP~v~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~-------~~~~--~~~~~vy~~~~---~g~l~ald~~tG~~~ 317 (394)
T PRK11138 250 TTPVVVGGVVYALAYNGNLVALDLRSGQIVWKREYGSV-------NDFA--VDGGRIYLVDQ---NDRVYALDTRGGVEL 317 (394)
T ss_pred CCcEEECCEEEEEEcCCeEEEEECCCCCEEEeecCCCc-------cCcE--EECCEEEEEcC---CCeEEEEECCCCcEE
Confidence 455678899999999999999999 6655444333210 1111 13566777766 677766665332210
Q ss_pred e-ccCCCCceEEEEEecCCCCCCCCcceEEEEcCCCcEEEEEEec
Q 002318 104 V-LSKLKGLVVNAVAWNRQQITEASTKEIILGTDTGQLHEMAVDE 147 (936)
Q Consensus 104 ~-L~klkg~~I~sVaw~~~~~~~~st~~iLiGt~~G~i~e~~i~~ 147 (936)
= -..+.+....+.+. ..+.+++|+.+|.|+-.....
T Consensus 318 W~~~~~~~~~~~sp~v--------~~g~l~v~~~~G~l~~ld~~t 354 (394)
T PRK11138 318 WSQSDLLHRLLTAPVL--------YNGYLVVGDSEGYLHWINRED 354 (394)
T ss_pred EcccccCCCcccCCEE--------ECCEEEEEeCCCEEEEEECCC
Confidence 0 01111111111111 135788999999888765433
No 274
>KOG2879 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=62.93 E-value=3.9 Score=43.16 Aligned_cols=37 Identities=24% Similarity=0.567 Sum_probs=30.3
Q ss_pred ecccccccccchhhhhcccccccccccCCCCCCCCEEEEcCCChhHHHhHHHHHh
Q 002318 830 IDRDEDCGVCRRKILVAGRDYRMARGYASVGPMAPFYVFPCGHAFHAQCLIAHVT 884 (936)
Q Consensus 830 i~~~~~C~~C~k~L~~~~~~~~~~~~~~~~~~~~~fvvFpCgH~fH~~CL~~~~~ 884 (936)
-+.+..|.+||.+=.. |+++=+|||.|..-|+.....
T Consensus 236 ~t~~~~C~~Cg~~Pti------------------P~~~~~C~HiyCY~Ci~ts~~ 272 (298)
T KOG2879|consen 236 GTSDTECPVCGEPPTI------------------PHVIGKCGHIYCYYCIATSRL 272 (298)
T ss_pred ccCCceeeccCCCCCC------------------Ceeeccccceeehhhhhhhhc
Confidence 3456789999987555 899999999999999987543
No 275
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=62.74 E-value=1.2e+02 Score=32.41 Aligned_cols=49 Identities=18% Similarity=0.143 Sum_probs=36.2
Q ss_pred HHHchhhHHHHHHhcCC-----h--hhHHHHHHHHHHHHHhcCCHHHHHHHHHHhc
Q 002318 370 VYLDMKEYAAALANCRD-----P--LQRDQVYLVQAEAAFATKDFHRAASFYAKIN 418 (936)
Q Consensus 370 ~ll~~~~f~~Al~~~~~-----~--~~~~~I~~~~~~~L~~~g~y~~Aa~~y~~~~ 418 (936)
.++++|+|++|.+..+. | ..........|+.++..|+|++|+..|.+..
T Consensus 41 ~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi 96 (243)
T PRK10866 41 QKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFI 96 (243)
T ss_pred HHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 36778999999988652 2 2345556788899999999999988776543
No 276
>smart00132 LIM Zinc-binding domain present in Lin-11, Isl-1, Mec-3. Zinc-binding domain family. Some LIM domains bind protein partners via tyrosine-containing motifs. LIM domains are found in many key regulators of developmental pathways.
Probab=62.54 E-value=3.3 Score=29.76 Aligned_cols=29 Identities=21% Similarity=0.545 Sum_probs=22.3
Q ss_pred cccccchhhhhcccccccccccCCCCCCCCEEEEcCCChhHHHhHH
Q 002318 835 DCGVCRRKILVAGRDYRMARGYASVGPMAPFYVFPCGHAFHAQCLI 880 (936)
Q Consensus 835 ~C~~C~k~L~~~~~~~~~~~~~~~~~~~~~fvvFpCgH~fH~~CL~ 880 (936)
+|..|+++|.. . ..++..=+..||.+|+.
T Consensus 1 ~C~~C~~~i~~-----~------------~~~~~~~~~~~H~~Cf~ 29 (39)
T smart00132 1 KCAGCGKPIRG-----G------------ELVLRALGKVWHPECFK 29 (39)
T ss_pred CccccCCcccC-----C------------cEEEEeCCccccccCCC
Confidence 58999999887 2 35566668899999874
No 277
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=62.49 E-value=30 Score=38.52 Aligned_cols=66 Identities=21% Similarity=0.199 Sum_probs=55.0
Q ss_pred HHHHHHHhcccccCCHHHHHHHHHHcCChhHHHHHHHhhhhHHHHHHHHHhcccHHHHHHHHhCCCC
Q 002318 496 REFRAFLSDCKDVLDEATTMKLLESYGRVEELVFFASLKEQHEIVVHHYIQQGEAKKALQMLRKPAV 562 (936)
Q Consensus 496 ~~l~~fl~~~~~~ld~~tv~~ll~~~g~~e~~l~~a~~~~dy~~ll~~yi~~~~~~~AL~~L~~~~d 562 (936)
++|..|-+.-+..+.-+..++.|-.+|...++..|-....+ +.-+.+|+.-|+|.+|.+.-.+..|
T Consensus 225 ~eL~~fa~skKsPIGyepFv~~~~~~~~~~eA~~yI~k~~~-~~rv~~y~~~~~~~~A~~~A~~~kd 290 (319)
T PF04840_consen 225 DELEKFAKSKKSPIGYEPFVEACLKYGNKKEASKYIPKIPD-EERVEMYLKCGDYKEAAQEAFKEKD 290 (319)
T ss_pred HHHHHHHhCCCCCCChHHHHHHHHHCCCHHHHHHHHHhCCh-HHHHHHHHHCCCHHHHHHHHHHcCC
Confidence 56667766656677788888888899999999888888888 8888999999999999998887776
No 278
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=62.21 E-value=1.5e+02 Score=32.54 Aligned_cols=156 Identities=13% Similarity=0.168 Sum_probs=88.6
Q ss_pred CCceeEEEEeCC--EEEEEecCCeEEEEeCCCCC-ceeeEcCCCCCCccceeEEEeCCCCCeEEEEeecCCCccEEEEec
Q 002318 21 RGVITCMSAGND--VIVLGTSKGWLIRHDFGAGD-SYDIDLSAGRPGEQSIHKVFVDPGGSHCIATIVGSGGAETFYTHA 97 (936)
Q Consensus 21 ~~~i~~l~v~~n--~l~l~~~~g~l~ridl~~~~-~~~~~l~~~~~~~~~i~~i~lDp~G~hlli~~~~~~~g~~~Y~~~ 97 (936)
...|+|.|-+.+ +++++..+..|..+--...+ -+....... -+..|+.|--.|.+..+.-|.. -.+-|+-.
T Consensus 10 ~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~~htls~--Hd~~vtgvdWap~snrIvtcs~----drnayVw~ 83 (361)
T KOG1523|consen 10 LEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSE--HDKIVTGVDWAPKSNRIVTCSH----DRNAYVWT 83 (361)
T ss_pred cCceeeeeecCCCceEEeccCCceEEEEEecCCCCceeceehhh--hCcceeEEeecCCCCceeEccC----CCCccccc
Confidence 346999999988 56666677777777552222 222221111 1468888888899988888876 33434433
Q ss_pred C-----CCCceeccCCCCceEEEEEecCCCCCCCCcceEEEEcCCCcEEEEEEecC-Cc-ccceeeEEeeeCCCCCceee
Q 002318 98 K-----WSKPRVLSKLKGLVVNAVAWNRQQITEASTKEIILGTDTGQLHEMAVDEK-DK-REKYIKLLFELNELPEAFMG 170 (936)
Q Consensus 98 ~-----~~k~k~L~klkg~~I~sVaw~~~~~~~~st~~iLiGt~~G~i~e~~i~~~-~~-~~~~~k~v~~l~~~~~~I~g 170 (936)
+ +.+.-.|.+ -|...++|-|.+ . ...|.+|+.--.|--+..+.. +- .- |.+ .-|- .+.|+.
T Consensus 84 ~~~~~~WkptlvLlR-iNrAAt~V~WsP-~-----enkFAVgSgar~isVcy~E~ENdWWVs---Khi-kkPi-rStv~s 151 (361)
T KOG1523|consen 84 QPSGGTWKPTLVLLR-INRAATCVKWSP-K-----ENKFAVGSGARLISVCYYEQENDWWVS---KHI-KKPI-RSTVTS 151 (361)
T ss_pred cCCCCeeccceeEEE-eccceeeEeecC-c-----CceEEeccCccEEEEEEEecccceehh---hhh-CCcc-ccceee
Confidence 2 333334555 377999999994 2 237999876554544444432 10 01 111 2221 255899
Q ss_pred EEEEeeccCCCceEEEEEECCCeEEEEec
Q 002318 171 LQMETASLSNGTRYYVMAVTPTRLYSFTG 199 (936)
Q Consensus 171 i~~~~~~~~~~~~~~i~ast~~rly~f~~ 199 (936)
+.|.. + .=.+..-+|+.+.+-|..
T Consensus 152 ldWhp----n-nVLlaaGs~D~k~rVfSa 175 (361)
T KOG1523|consen 152 LDWHP----N-NVLLAAGSTDGKCRVFSA 175 (361)
T ss_pred eeccC----C-cceecccccCcceeEEEE
Confidence 99984 2 112333334556665554
No 279
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=61.56 E-value=52 Score=35.55 Aligned_cols=46 Identities=15% Similarity=0.175 Sum_probs=11.8
Q ss_pred HHchhhHHHHHHhcCChh---hHHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 002318 371 YLDMKEYAAALANCRDPL---QRDQVYLVQAEAAFATKDFHRAASFYAK 416 (936)
Q Consensus 371 ll~~~~f~~Al~~~~~~~---~~~~I~~~~~~~L~~~g~y~~Aa~~y~~ 416 (936)
++..++|++|+++++... .-......++..+...|+++++...+.+
T Consensus 87 l~~~~~~~~A~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~ 135 (280)
T PF13429_consen 87 LLQDGDPEEALKLAEKAYERDGDPRYLLSALQLYYRLGDYDEAEELLEK 135 (280)
T ss_dssp -------------------------------H-HHHTT-HHHHHHHHHH
T ss_pred ccccccccccccccccccccccccchhhHHHHHHHHHhHHHHHHHHHHH
Confidence 456777777877765321 1234455666777777778777777666
No 280
>KOG0320 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=61.23 E-value=5.8 Score=39.28 Aligned_cols=35 Identities=23% Similarity=0.559 Sum_probs=24.9
Q ss_pred ccccccchhhhhcccccccccccCCCCCCCCEEEEcCCChhHHHhHHHHHhh
Q 002318 834 EDCGVCRRKILVAGRDYRMARGYASVGPMAPFYVFPCGHAFHAQCLIAHVTQ 885 (936)
Q Consensus 834 ~~C~~C~k~L~~~~~~~~~~~~~~~~~~~~~fvvFpCgH~fH~~CL~~~~~~ 885 (936)
.+|.+|--+... + .-+--.|||.|-+.|+.+.+..
T Consensus 132 ~~CPiCl~~~se-----k------------~~vsTkCGHvFC~~Cik~alk~ 166 (187)
T KOG0320|consen 132 YKCPICLDSVSE-----K------------VPVSTKCGHVFCSQCIKDALKN 166 (187)
T ss_pred cCCCceecchhh-----c------------cccccccchhHHHHHHHHHHHh
Confidence 468888766655 3 1122579999999999988743
No 281
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=61.19 E-value=44 Score=37.94 Aligned_cols=46 Identities=20% Similarity=0.234 Sum_probs=29.1
Q ss_pred hcccHHHHHHHHhCCC----CchhhHHhhHHHH-HhHChHHHHHHHHccCC
Q 002318 546 QQGEAKKALQMLRKPA----VPIDLQYKFAPDL-IMLDAYETVESWMTTNN 591 (936)
Q Consensus 546 ~~~~~~~AL~~L~~~~----d~~~li~k~~~~L-l~~~p~~ti~ll~~~~~ 591 (936)
..++.++||+...++. +..+.+++.+.+. +..+|.++|+++++...
T Consensus 536 ~~~~ldeald~f~klh~il~nn~evl~qianiye~led~aqaie~~~q~~s 586 (840)
T KOG2003|consen 536 ALGNLDEALDCFLKLHAILLNNAEVLVQIANIYELLEDPAQAIELLMQANS 586 (840)
T ss_pred HhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhcc
Confidence 3567778887776652 1235555555443 34688899999987643
No 282
>smart00744 RINGv The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins. Some of these proteins have been shown both in vivo and in vitro to have ubiquitin E3 ligase activity. The RING-variant domain is reminiscent of both the RING and the PHD domains and may represent an evolutionary intermediate. To describe this domain the term PHD/LAP domain has been used in the past. Extended description: The RING-variant (RINGv) domain contains a C4HC3 zinc-finger-like motif similar to the PHD domain, while some of the spacing between the Cys/His residues follow a pattern somewhat closer to that found in the RING domain. The RINGv domain, similar to the RING, PHD and LIM domains, is thought to bind two zinc ions co-ordinated by the highly conserved Cys and His residues. RING variant domain: C-x (2) -C-x(10-45)-C-x (1) -C-x (7) -H-x(2)-C-x(11-25)-C-x(2)-C As opposed to a PHD: C-x(1-2) -C-x (7-13)-C-x(2-4)-C-x(4-5)-H-x(2)-C-x(10-21)-C-x(2)-C Class
Probab=61.13 E-value=9.9 Score=29.57 Aligned_cols=23 Identities=26% Similarity=0.531 Sum_probs=18.4
Q ss_pred EEEEcCC-----ChhHHHhHHHHHhhcC
Q 002318 865 FYVFPCG-----HAFHAQCLIAHVTQCT 887 (936)
Q Consensus 865 fvvFpCg-----H~fH~~CL~~~~~~~~ 887 (936)
..+-||. |.+|..||...+....
T Consensus 14 ~l~~PC~C~G~~~~vH~~Cl~~W~~~~~ 41 (49)
T smart00744 14 PLVSPCRCKGSLKYVHQECLERWINESG 41 (49)
T ss_pred eeEeccccCCchhHHHHHHHHHHHHHcC
Confidence 3467885 9999999999987654
No 283
>PRK13979 DNA topoisomerase IV subunit A; Provisional
Probab=61.13 E-value=2.7e+02 Score=35.97 Aligned_cols=160 Identities=12% Similarity=0.161 Sum_probs=96.8
Q ss_pred EEEeCCEEEEEecCCeEEEEeC-CC--CCceeeEcCCCCCCccceeEEEeCCCCCeEEEEeecCCCccEEEEec------
Q 002318 27 MSAGNDVIVLGTSKGWLIRHDF-GA--GDSYDIDLSAGRPGEQSIHKVFVDPGGSHCIATIVGSGGAETFYTHA------ 97 (936)
Q Consensus 27 l~v~~n~l~l~~~~g~l~ridl-~~--~~~~~~~l~~~~~~~~~i~~i~lDp~G~hlli~~~~~~~g~~~Y~~~------ 97 (936)
+-...+++++.++.|.|-|+++ .- .......+.. ..++.+..++.-.+-.++++-|+ .|.+|.+..
T Consensus 512 lI~~E~v~v~lS~~GyIKr~~~~~~~~q~~g~~~~~~--ke~D~i~~~~~~~T~d~LL~FTn---~Gkvy~ikvy~IPe~ 586 (957)
T PRK13979 512 LIVVEDVVITLSNEGFIKRIPLKSYNRSNSNVEDIEY--REGDFNKFLIQSNTKDTLLIFTD---KGNMYQIKGINIPEF 586 (957)
T ss_pred cCCCcceEEEEecCCEEEEcccccccccccccccccc--CCCCceEEEEEEcCCCEEEEEEC---CCeEEEEEeeeCCCC
Confidence 4456788899999999999986 21 1111001111 12467888888888888999888 899988753
Q ss_pred C-CCCceeccCC------CCc-eEEEEEecCCCCCCCCcceEEEEcCCCcEEEEEEecCCcccceeeEEeeeCCCCCcee
Q 002318 98 K-WSKPRVLSKL------KGL-VVNAVAWNRQQITEASTKEIILGTDTGQLHEMAVDEKDKREKYIKLLFELNELPEAFM 169 (936)
Q Consensus 98 ~-~~k~k~L~kl------kg~-~I~sVaw~~~~~~~~st~~iLiGt~~G~i~e~~i~~~~~~~~~~k~v~~l~~~~~~I~ 169 (936)
+ ..+-.++..+ .|- .+..+.+++ . . ....+++.|++|.|--+.+..-...-+ -+..++|.+. ..+.
T Consensus 587 ~~~~~G~~I~nll~~~~~~~EkIv~i~~~~e-f-~--~~~~lv~~Tk~G~VKrt~L~ef~~~r~-~~~aikL~e~-DeLV 660 (957)
T PRK13979 587 KWKEKGERLDEIIKGIDLESEKIIEAYSIED-F-T--PQKDFIFITDSGGIKKTSLDKFVTNYT-KLMALKLKKG-EKLI 660 (957)
T ss_pred CcCCCCeEHHHhhhccCCCCCeEEEEEEecc-C-C--CCCEEEEEECCCeEEEEehhhcccccc-ceEEEEcCCC-CEEE
Confidence 1 1233443332 232 444455542 1 1 224699999999999988753211112 2566788763 3455
Q ss_pred eEEEEeeccCCCceEEEEEECCCeEEEEec
Q 002318 170 GLQMETASLSNGTRYYVMAVTPTRLYSFTG 199 (936)
Q Consensus 170 gi~~~~~~~~~~~~~~i~ast~~rly~f~~ 199 (936)
++.+.. ...+...++++|.......|..
T Consensus 661 ~v~~~~--~~~~~~~Iil~Tk~G~airF~~ 688 (957)
T PRK13979 661 KVKLVD--RTREEKFIKIKTKKGLSFTVEE 688 (957)
T ss_pred EEEEcC--CCCCCCEEEEEeCCCcEEEEEH
Confidence 665542 1112246788788788888864
No 284
>KOG0827 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=61.12 E-value=4.5 Score=44.61 Aligned_cols=15 Identities=47% Similarity=1.132 Sum_probs=13.4
Q ss_pred cCCChhHHHhHHHHH
Q 002318 869 PCGHAFHAQCLIAHV 883 (936)
Q Consensus 869 pCgH~fH~~CL~~~~ 883 (936)
.|||.||..||....
T Consensus 25 ~cGhifh~~cl~qwf 39 (465)
T KOG0827|consen 25 TCGHIFHTTCLTQWF 39 (465)
T ss_pred chhhHHHHHHHHHHH
Confidence 499999999999865
No 285
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=61.05 E-value=76 Score=37.83 Aligned_cols=150 Identities=11% Similarity=0.123 Sum_probs=98.2
Q ss_pred CCceeEEEEeCC--EEEEEecCCeEEEEeC-CCCCceeeEcCCCCCCccceeEEEeCCCCCeEEEEeecCCCccEEEEec
Q 002318 21 RGVITCMSAGND--VIVLGTSKGWLIRHDF-GAGDSYDIDLSAGRPGEQSIHKVFVDPGGSHCIATIVGSGGAETFYTHA 97 (936)
Q Consensus 21 ~~~i~~l~v~~n--~l~l~~~~g~l~ridl-~~~~~~~~~l~~~~~~~~~i~~i~lDp~G~hlli~~~~~~~g~~~Y~~~ 97 (936)
.+.|-++|..++ +++-|-..+-|-.||. ...++.++.-| ..-|.-+-+++.|..++..+. +|..--+..
T Consensus 171 k~siYSLA~N~t~t~ivsGgtek~lr~wDprt~~kimkLrGH-----TdNVr~ll~~dDGt~~ls~sS---DgtIrlWdL 242 (735)
T KOG0308|consen 171 KDSIYSLAMNQTGTIIVSGGTEKDLRLWDPRTCKKIMKLRGH-----TDNVRVLLVNDDGTRLLSASS---DGTIRLWDL 242 (735)
T ss_pred ccceeeeecCCcceEEEecCcccceEEeccccccceeeeecc-----ccceEEEEEcCCCCeEeecCC---CceEEeeec
Confidence 456889999998 7777777788888899 77777777755 467888999999999998887 887766665
Q ss_pred CCCCcee---ccCCCCceEEEEEecCCCCCCCCcceEEEEcCCCcEEEEEEecCCcccceeeEEeeeCCCCCceeeEEEE
Q 002318 98 KWSKPRV---LSKLKGLVVNAVAWNRQQITEASTKEIILGTDTGQLHEMAVDEKDKREKYIKLLFELNELPEAFMGLQME 174 (936)
Q Consensus 98 ~~~k~k~---L~klkg~~I~sVaw~~~~~~~~st~~iLiGt~~G~i~e~~i~~~~~~~~~~k~v~~l~~~~~~I~gi~~~ 174 (936)
+-.+.-. +.+ +| .=||. .+.+=..+--|.++|.||-+.+-.- +.... +-+..+||..+...
T Consensus 243 gqQrCl~T~~vH~-e~----VWaL~----~~~sf~~vYsG~rd~~i~~Tdl~n~----~~~tl---ick~daPv~~l~~~ 306 (735)
T KOG0308|consen 243 GQQRCLATYIVHK-EG----VWALQ----SSPSFTHVYSGGRDGNIYRTDLRNP----AKSTL---ICKEDAPVLKLHLH 306 (735)
T ss_pred cccceeeeEEecc-Cc----eEEEe----eCCCcceEEecCCCCcEEecccCCc----hhheE---eecCCCchhhhhhc
Confidence 4433211 221 11 22333 2234457888999999999988532 11122 22223778887775
Q ss_pred eeccCCCceEEEEEE-CCCeEEEEecC
Q 002318 175 TASLSNGTRYYVMAV-TPTRLYSFTGF 200 (936)
Q Consensus 175 ~~~~~~~~~~~i~as-t~~rly~f~~~ 200 (936)
.- + .-+ |++ |...+-.|.+.
T Consensus 307 ~~----~-~~~-WvtTtds~I~rW~~~ 327 (735)
T KOG0308|consen 307 EH----D-NSV-WVTTTDSSIKRWKLE 327 (735)
T ss_pred cc----c-CCc-eeeeccccceecCCc
Confidence 31 1 122 544 47788888664
No 286
>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport]
Probab=61.04 E-value=85 Score=38.98 Aligned_cols=48 Identities=17% Similarity=0.207 Sum_probs=32.4
Q ss_pred HHHHHHHHcCChhHHHHHHHhh-hhHHHHH----HHHHhcccHHHHHHHHhCC
Q 002318 513 TTMKLLESYGRVEELVFFASLK-EQHEIVV----HHYIQQGEAKKALQMLRKP 560 (936)
Q Consensus 513 tv~~ll~~~g~~e~~l~~a~~~-~dy~~ll----~~yi~~~~~~~AL~~L~~~ 560 (936)
-|..+.-.-|.++.|+..|... .--+.|+ ++|+++++|..|-+++.+.
T Consensus 363 ~vWk~yLd~g~y~kAL~~ar~~p~~le~Vl~~qAdf~f~~k~y~~AA~~yA~t 415 (911)
T KOG2034|consen 363 DVWKTYLDKGEFDKALEIARTRPDALETVLLKQADFLFQDKEYLRAAEIYAET 415 (911)
T ss_pred HHHHHHHhcchHHHHHHhccCCHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHh
Confidence 4556666678888888777766 3333333 5777888888888887665
No 287
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=60.81 E-value=23 Score=38.26 Aligned_cols=120 Identities=15% Similarity=0.181 Sum_probs=65.0
Q ss_pred ccceeEEEeCCCCCeEEEEeecCCCccEEEEecCCCC---ceeccCCCCc--------------eEEEEEecCCCCCCCC
Q 002318 65 EQSIHKVFVDPGGSHCIATIVGSGGAETFYTHAKWSK---PRVLSKLKGL--------------VVNAVAWNRQQITEAS 127 (936)
Q Consensus 65 ~~~i~~i~lDp~G~hlli~~~~~~~g~~~Y~~~~~~k---~k~L~klkg~--------------~I~sVaw~~~~~~~~s 127 (936)
.+.|+-+-.|.+|.++...-. .|-+-...+...+ -|.++.+.++ .|..+.|.++. .
T Consensus 26 ad~ItaVefd~tg~YlatGDk---gGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t----~ 98 (460)
T COG5170 26 ADKITAVEFDETGLYLATGDK---GGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDT----G 98 (460)
T ss_pred cceeeEEEeccccceEeecCC---CceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCC----C
Confidence 368899999999987654333 2433222211111 2333333333 35688998543 3
Q ss_pred cceEEEEcCCCcEE-----EEEEecCCcccceeeEEeeeCCCCCceeeEEEEeeccCCCceEEEEEECCCeEE
Q 002318 128 TKEIILGTDTGQLH-----EMAVDEKDKREKYIKLLFELNELPEAFMGLQMETASLSNGTRYYVMAVTPTRLY 195 (936)
Q Consensus 128 t~~iLiGt~~G~i~-----e~~i~~~~~~~~~~k~v~~l~~~~~~I~gi~~~~~~~~~~~~~~i~ast~~rly 195 (936)
...||+.|++-.|= |..+..- .+..+..-+..|. .||+++..-...|. .+....++|.+|+|+|
T Consensus 99 r~hFLlstNdktiKlWKiyeknlk~v--a~nnls~~~~~~~-~g~~~s~~~l~lpr-ls~hd~iiaa~p~rvy 167 (460)
T COG5170 99 RNHFLLSTNDKTIKLWKIYEKNLKVV--AENNLSDSFHSPM-GGPLTSTKELLLPR-LSEHDEIIAAKPCRVY 167 (460)
T ss_pred cceEEEecCCceeeeeeeecccchhh--hcccccccccccc-CCCcCCHHHhhccc-ccccceEEEeccceec
Confidence 34899999886543 3332210 1111112223332 36777665544442 3345788889999999
No 288
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=60.39 E-value=46 Score=38.22 Aligned_cols=109 Identities=22% Similarity=0.250 Sum_probs=64.3
Q ss_pred HHHHHHHHHHHhhcCCCCHhHHHHHHHHhhcCCChHHHHHHHHHhhCCCCCCCCcccCChHHHHHHHHhcCcceeeehhh
Q 002318 615 HEVIKYLEFCVHRLHNEDPGVHNLLLSLYAKQEDDSALLRFLQCKFGKGRENGPEFFYDPKYALRLCLKEKRMRACVHIY 694 (936)
Q Consensus 615 ~~~~~YLe~li~~~~~~~~~~hn~ll~Ly~~~~~~~~Ll~fL~~~~~~~~~~~~~~~yd~~~aLrlc~~~~~~~~~v~L~ 694 (936)
..++.+|+.+.... +.+.-.++.+|...+.+.+.+++|.+.- .-.+..+.-++. .+..|
T Consensus 186 ~~ai~lle~L~~~~----pev~~~LA~v~l~~~~E~~AI~ll~~aL----------~~~p~d~~LL~~-------Qa~fL 244 (395)
T PF09295_consen 186 DEAIELLEKLRERD----PEVAVLLARVYLLMNEEVEAIRLLNEAL----------KENPQDSELLNL-------QAEFL 244 (395)
T ss_pred HHHHHHHHHHHhcC----CcHHHHHHHHHHhcCcHHHHHHHHHHHH----------HhCCCCHHHHHH-------HHHHH
Confidence 45777888877654 4566667777777666777888887761 011111222222 22234
Q ss_pred hccccHHHHHHHHHhcCHHHHHHHhhccCCCHHHHHHHHHHHHHHHhhcccCCChHhHHHHHHHHHhc
Q 002318 695 GMMSMHEEAVALALQVDPELAMAEADKVEDDEDLRKKLWLMVAKHVIEQEKGTKRENIRKAIAFLKET 762 (936)
Q Consensus 695 ~~~g~~~eAl~l~l~~di~lA~~~a~~~~~d~~~~kkLWl~ll~~~i~~~~~~~~~~i~~~l~~L~~~ 762 (936)
-+.|+++.|+.++-+ |.+.+ | ++.+ .|..|++..+.. ++.+.|+-.|+.+
T Consensus 245 l~k~~~~lAL~iAk~-----av~ls--P-~~f~----~W~~La~~Yi~~------~d~e~ALlaLNs~ 294 (395)
T PF09295_consen 245 LSKKKYELALEIAKK-----AVELS--P-SEFE----TWYQLAECYIQL------GDFENALLALNSC 294 (395)
T ss_pred HhcCCHHHHHHHHHH-----HHHhC--c-hhHH----HHHHHHHHHHhc------CCHHHHHHHHhcC
Confidence 455555555554432 22211 2 2333 899999999987 4788888888765
No 289
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=60.22 E-value=4e+02 Score=32.69 Aligned_cols=35 Identities=14% Similarity=0.234 Sum_probs=27.7
Q ss_pred HHHHHHHHhcCcceeeehhhhccccHHHHHHHHHh
Q 002318 675 KYALRLCLKEKRMRACVHIYGMMSMHEEAVALALQ 709 (936)
Q Consensus 675 ~~aLrlc~~~~~~~~~v~L~~~~g~~~eAl~l~l~ 709 (936)
..|-+-|.+.+.++..|.||-..|.|+.||+++-.
T Consensus 418 ~~~A~~~e~~g~~~dAi~Ly~La~~~d~vl~lln~ 452 (613)
T PF04097_consen 418 EQAAREAEERGRFEDAILLYHLAEEYDKVLSLLNR 452 (613)
T ss_dssp HHHHHHHHHCT-HHHHHHHHHHTT-HHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHhhHHHHHHHHHH
Confidence 34555678899999999999999999999999754
No 290
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=60.01 E-value=4.5e+02 Score=33.18 Aligned_cols=83 Identities=11% Similarity=0.023 Sum_probs=55.8
Q ss_pred HHHHchhhHHHHHHhcCChh----hHHHHHHHHHHHHHhcCCHHHHHHHHHHhcCC-----CChHHHHHHhcCcChHHHH
Q 002318 369 KVYLDMKEYAAALANCRDPL----QRDQVYLVQAEAAFATKDFHRAASFYAKINYI-----LSFEEITLKFISVSEQDAL 439 (936)
Q Consensus 369 ~~ll~~~~f~~Al~~~~~~~----~~~~I~~~~~~~L~~~g~y~~Aa~~y~~~~~~-----~~~E~v~lkFl~~~~~~~L 439 (936)
.+..-.|++++|++++.... .-...+...|..+...|++++|+..|.+.... ..+-..+..+++.++.+.-
T Consensus 23 ~ia~~~g~~~~A~~~~~~~~~~~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~l~~~g~~~eA 102 (765)
T PRK10049 23 QIALWAGQDAEVITVYNRYRVHMQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQNDDYQRGLILTLADAGQYDEA 102 (765)
T ss_pred HHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHH
Confidence 44566799999998876421 22456788899999999999999999986411 1122344455667777766
Q ss_pred HHHHHHHhhccc
Q 002318 440 RTFLLRKLDNLA 451 (936)
Q Consensus 440 ~~YL~~~l~~l~ 451 (936)
..+|..-+..-+
T Consensus 103 ~~~l~~~l~~~P 114 (765)
T PRK10049 103 LVKAKQLVSGAP 114 (765)
T ss_pred HHHHHHHHHhCC
Confidence 677776554433
No 291
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=59.50 E-value=9.8 Score=41.34 Aligned_cols=67 Identities=10% Similarity=0.176 Sum_probs=48.3
Q ss_pred EEEEeCCEEEEEecCCeEEEEeCCCCCc-eeeEcCCCCCCccceeEEEeCCCCCeEEEEeecCCCccEEEEe
Q 002318 26 CMSAGNDVIVLGTSKGWLIRHDFGAGDS-YDIDLSAGRPGEQSIHKVFVDPGGSHCIATIVGSGGAETFYTH 96 (936)
Q Consensus 26 ~l~v~~n~l~l~~~~g~l~ridl~~~~~-~~~~l~~~~~~~~~i~~i~lDp~G~hlli~~~~~~~g~~~Y~~ 96 (936)
++.+..++|++|...|+++.+||.+++. .--.+..+. +...|.+..+...|..++.+++ +|.++=+.
T Consensus 314 ~~d~~~~~la~gnq~g~v~vwdL~~~ep~~~ttl~~s~-~~~tVRQ~sfS~dgs~lv~vcd---d~~Vwrwd 381 (385)
T KOG1034|consen 314 AFDPWQKMLALGNQSGKVYVWDLDNNEPPKCTTLTHSK-SGSTVRQTSFSRDGSILVLVCD---DGTVWRWD 381 (385)
T ss_pred eecHHHHHHhhccCCCcEEEEECCCCCCccCceEEecc-ccceeeeeeecccCcEEEEEeC---CCcEEEEE
Confidence 3445567889999999999999933333 222233222 2478999999999999998888 88886554
No 292
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=59.04 E-value=2.5e+02 Score=30.00 Aligned_cols=145 Identities=13% Similarity=0.260 Sum_probs=70.5
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHhcCCCChH----HHHHHhc----CcChHHHHHHHHHHHhhcccCchhHHHHHHHH
Q 002318 392 QVYLVQAEAAFATKDFHRAASFYAKINYILSFE----EITLKFI----SVSEQDALRTFLLRKLDNLAKDDKCQITMIST 463 (936)
Q Consensus 392 ~I~~~~~~~L~~~g~y~~Aa~~y~~~~~~~~~E----~v~lkFl----~~~~~~~L~~YL~~~l~~l~~~~~~~~~lL~~ 463 (936)
..+...|...+++|+|.+|++.|......-+|. ++-+..+ ..++.+.-..++..-+..-+.++.....
T Consensus 35 ~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~---- 110 (254)
T COG4105 35 SELYNEGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYA---- 110 (254)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHH----
Confidence 566777888888888888888888765212222 2222221 2334444444444333333333222111
Q ss_pred HHHHHHHHHHhhhhcccchhhccchHHHHHHHHHHHHHHhccccc---CCHHHHHHHHHHcCChhHHHHHHHhhhhHHH-
Q 002318 464 WATELYLDKINRLLLEDDTALENRSSEYQSIMREFRAFLSDCKDV---LDEATTMKLLESYGRVEELVFFASLKEQHEI- 539 (936)
Q Consensus 464 Wl~ely~~~l~~~~~e~~~~~~~~~~~~~~~~~~l~~fl~~~~~~---ld~~tv~~ll~~~g~~e~~l~~a~~~~dy~~- 539 (936)
.|+..+..+..-++... ...........|+.|+.++.+. -|...-+..+.. ..--|+.
T Consensus 111 ----~YlkgLs~~~~i~~~~r--Dq~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~i~~~~d------------~LA~~Em~ 172 (254)
T COG4105 111 ----YYLKGLSYFFQIDDVTR--DQSAARAAFAAFKELVQRYPNSRYAPDAKARIVKLND------------ALAGHEMA 172 (254)
T ss_pred ----HHHHHHHHhccCCcccc--CHHHHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHH------------HHHHHHHH
Confidence 13332222210000000 0122345567889999887652 233332222221 1112333
Q ss_pred HHHHHHhcccHHHHHHHHh
Q 002318 540 VVHHYIQQGEAKKALQMLR 558 (936)
Q Consensus 540 ll~~yi~~~~~~~AL~~L~ 558 (936)
+..+|..+|.|..|..-..
T Consensus 173 IaryY~kr~~~~AA~nR~~ 191 (254)
T COG4105 173 IARYYLKRGAYVAAINRFE 191 (254)
T ss_pred HHHHHHHhcChHHHHHHHH
Confidence 6689999999988876443
No 293
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=58.95 E-value=95 Score=37.00 Aligned_cols=117 Identities=9% Similarity=0.105 Sum_probs=76.1
Q ss_pred eeEEEEeCCEEE-EEe-cCCeEEEEeC-CCCCcee--------eEcCCCCCCccceeEEEeCCCCCeEEEEeecCCCccE
Q 002318 24 ITCMSAGNDVIV-LGT-SKGWLIRHDF-GAGDSYD--------IDLSAGRPGEQSIHKVFVDPGGSHCIATIVGSGGAET 92 (936)
Q Consensus 24 i~~l~v~~n~l~-l~~-~~g~l~ridl-~~~~~~~--------~~l~~~~~~~~~i~~i~lDp~G~hlli~~~~~~~g~~ 92 (936)
||-+.+..+... -+- .+|.|-.||| .+-...+ ++-+- .....+.++-+|.+|..++++.. |+..
T Consensus 221 vTvv~fkDe~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~s--krs~G~~nL~lDssGt~L~AsCt---D~sI 295 (720)
T KOG0321|consen 221 VTVVLFKDESTLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHS--KRSVGQVNLILDSSGTYLFASCT---DNSI 295 (720)
T ss_pred eEEEEEeccceeeeccCCCcceEEEeecccccccccCCCcccCccCcc--cceeeeEEEEecCCCCeEEEEec---CCcE
Confidence 445666555442 222 3788999999 4433322 21121 11256889999999999999877 7888
Q ss_pred EEEecCCCCceeccCCCCceEEEEEecCCCCCCCCcceEEEEcCCCcEEEEEEec
Q 002318 93 FYTHAKWSKPRVLSKLKGLVVNAVAWNRQQITEASTKEIILGTDTGQLHEMAVDE 147 (936)
Q Consensus 93 ~Y~~~~~~k~k~L~klkg~~I~sVaw~~~~~~~~st~~iLiGt~~G~i~e~~i~~ 147 (936)
|.++-.+....++.-++|+.+.++---. ....+...++=||.++..|.-.+..
T Consensus 296 y~ynm~s~s~sP~~~~sg~~~~sf~vks--~lSpd~~~l~SgSsd~~ayiw~vs~ 348 (720)
T KOG0321|consen 296 YFYNMRSLSISPVAEFSGKLNSSFYVKS--ELSPDDCSLLSGSSDEQAYIWVVSS 348 (720)
T ss_pred EEEeccccCcCchhhccCcccceeeeee--ecCCCCceEeccCCCcceeeeeecC
Confidence 8887766666677777888777654431 1222345788899999998877653
No 294
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=58.88 E-value=30 Score=36.28 Aligned_cols=119 Identities=13% Similarity=0.179 Sum_probs=77.2
Q ss_pred ccceeEEEeCCCCCeEEEEeecCCCccEEEEecCCC-CceeccCCCCc--eEEEEEecCCCCCCCCcceEEEEcC-CCcE
Q 002318 65 EQSIHKVFVDPGGSHCIATIVGSGGAETFYTHAKWS-KPRVLSKLKGL--VVNAVAWNRQQITEASTKEIILGTD-TGQL 140 (936)
Q Consensus 65 ~~~i~~i~lDp~G~hlli~~~~~~~g~~~Y~~~~~~-k~k~L~klkg~--~I~sVaw~~~~~~~~st~~iLiGt~-~G~i 140 (936)
.+.|+.+-+|-.|..|.-|+. |+.+-......+ +-+.|..|+|+ +|--|+|-+|.+ |.||-.++ +|.+
T Consensus 11 ~D~IHda~lDyygkrlATcsS---D~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~-----G~iLAScsYDgkV 82 (299)
T KOG1332|consen 11 EDMIHDAQLDYYGKRLATCSS---DGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKF-----GTILASCSYDGKV 82 (299)
T ss_pred hhhhhHhhhhhhcceeeeecC---CccEEEEEEcCCCCceeeeEecCCCCCeeEEeeccccc-----CcEeeEeecCceE
Confidence 467899999999999999987 887765554444 34778888886 899999998764 47887654 7877
Q ss_pred EEEEEecCCcccceeeEEeeeCCCCCceeeEEEEeeccCCCceEEEE-EEC--CCeEEEEecC
Q 002318 141 HEMAVDEKDKREKYIKLLFELNELPEAFMGLQMETASLSNGTRYYVM-AVT--PTRLYSFTGF 200 (936)
Q Consensus 141 ~e~~i~~~~~~~~~~k~v~~l~~~~~~I~gi~~~~~~~~~~~~~~i~-ast--~~rly~f~~~ 200 (936)
+.-.=+.+ .+.+.++-..-.++|.+|.|.. .+.+.++. |++ ..++..|.+.
T Consensus 83 IiWke~~g-----~w~k~~e~~~h~~SVNsV~wap----heygl~LacasSDG~vsvl~~~~~ 136 (299)
T KOG1332|consen 83 IIWKEENG-----RWTKAYEHAAHSASVNSVAWAP----HEYGLLLACASSDGKVSVLTYDSS 136 (299)
T ss_pred EEEecCCC-----chhhhhhhhhhcccceeecccc----cccceEEEEeeCCCcEEEEEEcCC
Confidence 65432222 2333333222125699999974 22334433 333 4567777653
No 295
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=58.75 E-value=21 Score=29.65 Aligned_cols=49 Identities=20% Similarity=0.319 Sum_probs=37.9
Q ss_pred HHHchhhHHHHHHhcCCh----hhHHHHHHHHHHHHHhcCCHHHHHHHHHHhc
Q 002318 370 VYLDMKEYAAALANCRDP----LQRDQVYLVQAEAAFATKDFHRAASFYAKIN 418 (936)
Q Consensus 370 ~ll~~~~f~~Al~~~~~~----~~~~~I~~~~~~~L~~~g~y~~Aa~~y~~~~ 418 (936)
.++..|+|++|+...+.. ..-..+....|..++..|++++|.+.|.+..
T Consensus 9 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 61 (100)
T cd00189 9 LYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKAL 61 (100)
T ss_pred HHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467789999999886531 1123677888999999999999999988765
No 296
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=58.44 E-value=88 Score=34.78 Aligned_cols=80 Identities=13% Similarity=0.104 Sum_probs=60.2
Q ss_pred CEEEEEecCCeEEEEeC-CCCCceeeEcCCCCCCccceeEEEeCCCCCeEEEEeecCCCccEEEEecCCCC-ceeccCCC
Q 002318 32 DVIVLGTSKGWLIRHDF-GAGDSYDIDLSAGRPGEQSIHKVFVDPGGSHCIATIVGSGGAETFYTHAKWSK-PRVLSKLK 109 (936)
Q Consensus 32 n~l~l~~~~g~l~ridl-~~~~~~~~~l~~~~~~~~~i~~i~lDp~G~hlli~~~~~~~g~~~Y~~~~~~k-~k~L~klk 109 (936)
.++.-|-.+++|-.||. .|--+-++.-+ +.=|..+-+.|.|.+++.|++ |+..-.+..+..+ .+.+. ..
T Consensus 305 ~~l~s~SrDktIk~wdv~tg~cL~tL~gh-----dnwVr~~af~p~Gkyi~ScaD---Dktlrvwdl~~~~cmk~~~-ah 375 (406)
T KOG0295|consen 305 QVLGSGSRDKTIKIWDVSTGMCLFTLVGH-----DNWVRGVAFSPGGKYILSCAD---DKTLRVWDLKNLQCMKTLE-AH 375 (406)
T ss_pred cEEEeecccceEEEEeccCCeEEEEEecc-----cceeeeeEEcCCCeEEEEEec---CCcEEEEEeccceeeeccC-CC
Confidence 37777888899999999 55444333333 467899999999999999999 8988777766654 34444 45
Q ss_pred CceEEEEEecC
Q 002318 110 GLVVNAVAWNR 120 (936)
Q Consensus 110 g~~I~sVaw~~ 120 (936)
-+.++|+.|..
T Consensus 376 ~hfvt~lDfh~ 386 (406)
T KOG0295|consen 376 EHFVTSLDFHK 386 (406)
T ss_pred cceeEEEecCC
Confidence 68999999984
No 297
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=58.42 E-value=2.5e+02 Score=32.11 Aligned_cols=152 Identities=13% Similarity=0.087 Sum_probs=84.3
Q ss_pred CCEEEEEecCCeEEEEeC-C-CCCceeeEcCCCCCCccceeEEEeCCCCCeEEEEeecCCCccEEEEecCCCCceeccCC
Q 002318 31 NDVIVLGTSKGWLIRHDF-G-AGDSYDIDLSAGRPGEQSIHKVFVDPGGSHCIATIVGSGGAETFYTHAKWSKPRVLSKL 108 (936)
Q Consensus 31 ~n~l~l~~~~g~l~ridl-~-~~~~~~~~l~~~~~~~~~i~~i~lDp~G~hlli~~~~~~~g~~~Y~~~~~~k~k~L~kl 108 (936)
.+.++-...+|.|.++|. . ++..... .+ . -+..|+.+-+.|.+..+|.+..+ ++.+.-+....-+. +|-.+
T Consensus 240 ~~lF~sv~dd~~L~iwD~R~~~~~~~~~-~~--a-h~~~vn~~~fnp~~~~ilAT~S~--D~tV~LwDlRnL~~-~lh~~ 312 (422)
T KOG0264|consen 240 EDLFGSVGDDGKLMIWDTRSNTSKPSHS-VK--A-HSAEVNCVAFNPFNEFILATGSA--DKTVALWDLRNLNK-PLHTF 312 (422)
T ss_pred hhhheeecCCCeEEEEEcCCCCCCCccc-cc--c-cCCceeEEEeCCCCCceEEeccC--CCcEEEeechhccc-Cceec
Confidence 445566778899999999 3 3333211 11 1 14789999999999988877542 67776666544321 23333
Q ss_pred CC--ceEEEEEecCCCCCCCCcceEEEE-cCCCcEEEEEEecCC-------cccceeeEEeeeCCCCCceeeEEEEeecc
Q 002318 109 KG--LVVNAVAWNRQQITEASTKEIILG-TDTGQLHEMAVDEKD-------KREKYIKLLFELNELPEAFMGLQMETASL 178 (936)
Q Consensus 109 kg--~~I~sVaw~~~~~~~~st~~iLiG-t~~G~i~e~~i~~~~-------~~~~~~k~v~~l~~~~~~I~gi~~~~~~~ 178 (936)
.| -.|-.|.|.|... .||-- ..+|.+.-..+..-+ ..+.-...+|.=.+=...|..+.|..
T Consensus 313 e~H~dev~~V~WSPh~e------tvLASSg~D~rl~vWDls~ig~eq~~eda~dgppEllF~HgGH~~kV~DfsWnp--- 383 (422)
T KOG0264|consen 313 EGHEDEVFQVEWSPHNE------TVLASSGTDRRLNVWDLSRIGEEQSPEDAEDGPPELLFIHGGHTAKVSDFSWNP--- 383 (422)
T ss_pred cCCCcceEEEEeCCCCC------ceeEecccCCcEEEEeccccccccChhhhccCCcceeEEecCcccccccccCCC---
Confidence 34 4899999996542 33332 346666555443110 01111122232222123477777763
Q ss_pred CCCceEEEEEECCCeEEEEec
Q 002318 179 SNGTRYYVMAVTPTRLYSFTG 199 (936)
Q Consensus 179 ~~~~~~~i~ast~~rly~f~~ 199 (936)
++...+.=|+-...|.-|.-
T Consensus 384 -~ePW~I~SvaeDN~LqIW~~ 403 (422)
T KOG0264|consen 384 -NEPWTIASVAEDNILQIWQM 403 (422)
T ss_pred -CCCeEEEEecCCceEEEeec
Confidence 33344444555667776743
No 298
>COG5152 Uncharacterized conserved protein, contains RING and CCCH-type Zn-fingers [General function prediction only]
Probab=58.27 E-value=4.6 Score=40.27 Aligned_cols=35 Identities=29% Similarity=0.693 Sum_probs=28.4
Q ss_pred cccccchhhhhcccccccccccCCCCCCCCEEEEcCCChhHHHhHHHHHhhcCC
Q 002318 835 DCGVCRRKILVAGRDYRMARGYASVGPMAPFYVFPCGHAFHAQCLIAHVTQCTN 888 (936)
Q Consensus 835 ~C~~C~k~L~~~~~~~~~~~~~~~~~~~~~fvvFpCgH~fH~~CL~~~~~~~~~ 888 (936)
.|.+|.+..-. . ||-.|||.|...|.+..+.+-..
T Consensus 198 ~C~iCKkdy~s-----p--------------vvt~CGH~FC~~Cai~~y~kg~~ 232 (259)
T COG5152 198 LCGICKKDYES-----P--------------VVTECGHSFCSLCAIRKYQKGDE 232 (259)
T ss_pred eehhchhhccc-----h--------------hhhhcchhHHHHHHHHHhccCCc
Confidence 79999987766 2 56789999999999998865433
No 299
>PRK04792 tolB translocation protein TolB; Provisional
Probab=58.17 E-value=2.4e+02 Score=32.94 Aligned_cols=90 Identities=13% Similarity=0.019 Sum_probs=51.1
Q ss_pred eEEEEeC--CEEEE-EecCC--eEEEEeCCCCCceeeEcCCCCCCccceeEEEeCCCCCeEEEEeecCCCccEEEEecCC
Q 002318 25 TCMSAGN--DVIVL-GTSKG--WLIRHDFGAGDSYDIDLSAGRPGEQSIHKVFVDPGGSHCIATIVGSGGAETFYTHAKW 99 (936)
Q Consensus 25 ~~l~v~~--n~l~l-~~~~g--~l~ridl~~~~~~~~~l~~~~~~~~~i~~i~lDp~G~hlli~~~~~~~g~~~Y~~~~~ 99 (936)
.+.+.+. +.+++ ...+| .|+++|+...++.++.-. .......-.+|.|.+++++++..++.+.|.++...
T Consensus 265 ~~~~wSPDG~~La~~~~~~g~~~Iy~~dl~tg~~~~lt~~-----~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~ 339 (448)
T PRK04792 265 GAPRFSPDGKKLALVLSKDGQPEIYVVDIATKALTRITRH-----RAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLAS 339 (448)
T ss_pred CCeeECCCCCEEEEEEeCCCCeEEEEEECCCCCeEECccC-----CCCccceEECCCCCEEEEEECCCCCceEEEEECCC
Confidence 4455553 34544 34455 499999933334333211 12234455689999998887633344566666665
Q ss_pred CCceeccCCCCceEEEEEecC
Q 002318 100 SKPRVLSKLKGLVVNAVAWNR 120 (936)
Q Consensus 100 ~k~k~L~klkg~~I~sVaw~~ 120 (936)
.+.+.|.. .|....+.+|.+
T Consensus 340 g~~~~Lt~-~g~~~~~~~~Sp 359 (448)
T PRK04792 340 GKVSRLTF-EGEQNLGGSITP 359 (448)
T ss_pred CCEEEEec-CCCCCcCeeECC
Confidence 56666652 344445678874
No 300
>PF13570 PQQ_3: PQQ-like domain; PDB: 3HXJ_B 3Q54_A.
Probab=57.87 E-value=14 Score=27.05 Aligned_cols=25 Identities=20% Similarity=0.236 Sum_probs=19.9
Q ss_pred eeEEEEeCCEEEEEecCCeEEEEeC
Q 002318 24 ITCMSAGNDVIVLGTSKGWLIRHDF 48 (936)
Q Consensus 24 i~~l~v~~n~l~l~~~~g~l~ridl 48 (936)
.++++|.++.+++++.+|.|+.+|.
T Consensus 14 ~~~~~v~~g~vyv~~~dg~l~ald~ 38 (40)
T PF13570_consen 14 WSSPAVAGGRVYVGTGDGNLYALDA 38 (40)
T ss_dssp -S--EECTSEEEEE-TTSEEEEEET
T ss_pred CcCCEEECCEEEEEcCCCEEEEEeC
Confidence 3678999999999999999999986
No 301
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=57.29 E-value=1.1e+02 Score=34.64 Aligned_cols=129 Identities=9% Similarity=0.061 Sum_probs=74.2
Q ss_pred ceeEEEEeC----CEEEEEecCCeEEEEeC-CCCCceeeEcCCCCCCccceeEEEeCCCCCeEEEEeecCCCccEEEEec
Q 002318 23 VITCMSAGN----DVIVLGTSKGWLIRHDF-GAGDSYDIDLSAGRPGEQSIHKVFVDPGGSHCIATIVGSGGAETFYTHA 97 (936)
Q Consensus 23 ~i~~l~v~~----n~l~l~~~~g~l~ridl-~~~~~~~~~l~~~~~~~~~i~~i~lDp~G~hlli~~~~~~~g~~~Y~~~ 97 (936)
.+.++..++ +.|+-+-.+|++-.|++ +-..+.+++=+ ..+|.++-..|.|++|...+= |..=--+..
T Consensus 219 ~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~e~~l~~l~gH-----~~RVs~VafHPsG~~L~Tasf---D~tWRlWD~ 290 (459)
T KOG0272|consen 219 RVGAAVFHPVDSDLNLATASADGTVKLWKLSQETPLQDLEGH-----LARVSRVAFHPSGKFLGTASF---DSTWRLWDL 290 (459)
T ss_pred ceeeEEEccCCCccceeeeccCCceeeeccCCCcchhhhhcc-----hhhheeeeecCCCceeeeccc---ccchhhccc
Confidence 355555544 46777778999999999 54555666555 378999999999998876543 221112222
Q ss_pred CCCCceeccCCCCceEEEEEecCCCCCCCCcceE-EEEcCC--CcEEEEEEecCCcccceeeEEeeeCCCCCceeeEEEE
Q 002318 98 KWSKPRVLSKLKGLVVNAVAWNRQQITEASTKEI-ILGTDT--GQLHEMAVDEKDKREKYIKLLFELNELPEAFMGLQME 174 (936)
Q Consensus 98 ~~~k~k~L~klkg~~I~sVaw~~~~~~~~st~~i-LiGt~~--G~i~e~~i~~~~~~~~~~k~v~~l~~~~~~I~gi~~~ 174 (936)
.+.+--.+..-....|-++||+++ |++ .-|+-+ |.|... + .-+.+.-|.+--.+|.++.|.
T Consensus 291 ~tk~ElL~QEGHs~~v~~iaf~~D-------GSL~~tGGlD~~~RvWDl----R-----tgr~im~L~gH~k~I~~V~fs 354 (459)
T KOG0272|consen 291 ETKSELLLQEGHSKGVFSIAFQPD-------GSLAATGGLDSLGRVWDL----R-----TGRCIMFLAGHIKEILSVAFS 354 (459)
T ss_pred ccchhhHhhcccccccceeEecCC-------CceeeccCccchhheeec----c-----cCcEEEEecccccceeeEeEC
Confidence 222222222222347999999943 232 234333 444433 2 123333344322569999997
Q ss_pred e
Q 002318 175 T 175 (936)
Q Consensus 175 ~ 175 (936)
.
T Consensus 355 P 355 (459)
T KOG0272|consen 355 P 355 (459)
T ss_pred C
Confidence 4
No 302
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=57.19 E-value=1.1e+02 Score=35.05 Aligned_cols=103 Identities=7% Similarity=0.031 Sum_probs=55.8
Q ss_pred EEEEeCCEEEEEecCCeEEEEeC-CCCCceeeEcCCCCCCccceeEEEeCCCCCeEEEEeecCCCccEEEEecCCCCcee
Q 002318 26 CMSAGNDVIVLGTSKGWLIRHDF-GAGDSYDIDLSAGRPGEQSIHKVFVDPGGSHCIATIVGSGGAETFYTHAKWSKPRV 104 (936)
Q Consensus 26 ~l~v~~n~l~l~~~~g~l~ridl-~~~~~~~~~l~~~~~~~~~i~~i~lDp~G~hlli~~~~~~~g~~~Y~~~~~~k~k~ 104 (936)
.+++.++.+|++..+|.|+.+|. .+..+-+.+.........++ + .+..+++.+. +|..+-++...-+..-
T Consensus 289 ~~~~~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~sp~----v--~~g~l~v~~~---~G~l~~ld~~tG~~~~ 359 (394)
T PRK11138 289 DFAVDGGRIYLVDQNDRVYALDTRGGVELWSQSDLLHRLLTAPV----L--YNGYLVVGDS---EGYLHWINREDGRFVA 359 (394)
T ss_pred CcEEECCEEEEEcCCCeEEEEECCCCcEEEcccccCCCcccCCE----E--ECCEEEEEeC---CCEEEEEECCCCCEEE
Confidence 46788999999999999999999 55443222211100000111 1 1556777766 7877666654322111
Q ss_pred ccCCCCceEEEEEecCCCCCCCCcceEEEEcCCCcEEEEE
Q 002318 105 LSKLKGLVVNAVAWNRQQITEASTKEIILGTDTGQLHEMA 144 (936)
Q Consensus 105 L~klkg~~I~sVaw~~~~~~~~st~~iLiGt~~G~i~e~~ 144 (936)
-.++-+..+ +..+.. ..+.+++||.+|.||...
T Consensus 360 ~~~~~~~~~----~s~P~~---~~~~l~v~t~~G~l~~~~ 392 (394)
T PRK11138 360 QQKVDSSGF----LSEPVV---ADDKLLIQARDGTVYAIT 392 (394)
T ss_pred EEEcCCCcc----eeCCEE---ECCEEEEEeCCceEEEEe
Confidence 111101111 111111 234899999999998754
No 303
>COG5432 RAD18 RING-finger-containing E3 ubiquitin ligase [Signal transduction mechanisms]
Probab=57.13 E-value=5.9 Score=41.89 Aligned_cols=35 Identities=29% Similarity=0.678 Sum_probs=28.0
Q ss_pred cccccccccchhhhhcccccccccccCCCCCCCCEEEEcCCChhHHHhHHHHHh
Q 002318 831 DRDEDCGVCRRKILVAGRDYRMARGYASVGPMAPFYVFPCGHAFHAQCLIAHVT 884 (936)
Q Consensus 831 ~~~~~C~~C~k~L~~~~~~~~~~~~~~~~~~~~~fvvFpCgH~fH~~CL~~~~~ 884 (936)
+...+|-+|.-.|.- + +.-+|||.|.+-|+..++.
T Consensus 23 Ds~lrC~IC~~~i~i-----p--------------~~TtCgHtFCslCIR~hL~ 57 (391)
T COG5432 23 DSMLRCRICDCRISI-----P--------------CETTCGHTFCSLCIRRHLG 57 (391)
T ss_pred hhHHHhhhhhheeec-----c--------------eecccccchhHHHHHHHhc
Confidence 345689999988766 2 4569999999999998864
No 304
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=57.10 E-value=10 Score=32.77 Aligned_cols=44 Identities=18% Similarity=0.289 Sum_probs=33.3
Q ss_pred chhhHHHHHHhcCC-----hh-hHHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 002318 373 DMKEYAAALANCRD-----PL-QRDQVYLVQAEAAFATKDFHRAASFYAK 416 (936)
Q Consensus 373 ~~~~f~~Al~~~~~-----~~-~~~~I~~~~~~~L~~~g~y~~Aa~~y~~ 416 (936)
++|+|+.|+.+.+. |. ....+....|.-+|..|+|++|...+.+
T Consensus 1 ~~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~ 50 (84)
T PF12895_consen 1 DQGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK 50 (84)
T ss_dssp HTT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC
T ss_pred CCccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 46888999988753 32 2456677789999999999999998855
No 305
>PRK05561 DNA topoisomerase IV subunit A; Validated
Probab=56.69 E-value=3.5e+02 Score=33.92 Aligned_cols=153 Identities=14% Similarity=0.153 Sum_probs=89.3
Q ss_pred EEEEeCCEEEEEecCCeEEEEeC-CCCCceeeEcCCCCCCccceeEEEeCCCCCeEEEEeecCCCccEEEEecCCC----
Q 002318 26 CMSAGNDVIVLGTSKGWLIRHDF-GAGDSYDIDLSAGRPGEQSIHKVFVDPGGSHCIATIVGSGGAETFYTHAKWS---- 100 (936)
Q Consensus 26 ~l~v~~n~l~l~~~~g~l~ridl-~~~~~~~~~l~~~~~~~~~i~~i~lDp~G~hlli~~~~~~~g~~~Y~~~~~~---- 100 (936)
.+-...+++++.+..|.|-|..+ .-... -+.+. .++.+..++.-.+..++++.|+ .|..|.+....-
T Consensus 502 dlI~~e~~lVllTk~GyIKR~~l~~f~~~-aikLk----e~D~Lv~v~~~~t~d~LllfT~---~Grv~r~~~~eIP~gr 573 (742)
T PRK05561 502 ALIPDEPVTVVLSKKGWVRRAKGHSIDAS-GLSFK----EGDSLLFAFEARTTDKLLLFTS---TGRVYSLPVHELPSAR 573 (742)
T ss_pred hcccCcceEEEEecCCEEEeccchhhhhh-ccccC----CCCeEEEEEEecCCCeEEEEEC---CCcEEEeEHHhCCCcC
Confidence 45566788999999999999988 21111 12221 2467888888777888999988 898887753221
Q ss_pred -Cce---eccCC-CCceEEEEEecCCCCCCCCcceEEEEcCCCcEEEEEEecCCcccceeeEEeeeCCCCCceeeEEEEe
Q 002318 101 -KPR---VLSKL-KGLVVNAVAWNRQQITEASTKEIILGTDTGQLHEMAVDEKDKREKYIKLLFELNELPEAFMGLQMET 175 (936)
Q Consensus 101 -k~k---~L~kl-kg~~I~sVaw~~~~~~~~st~~iLiGt~~G~i~e~~i~~~~~~~~~~k~v~~l~~~~~~I~gi~~~~ 175 (936)
+-. .+-+| .|-.|.++...+ ....+++.|++|.+-.+.+..-...-+.-+.+..+.+ ++.+-++....
T Consensus 574 a~Gv~i~~~i~L~~gE~Iv~~~~~~------~~~~lllvT~~G~~KRt~lse~~~~~R~gkg~i~Lk~-~D~Lv~a~~v~ 646 (742)
T PRK05561 574 GDGEPLTGLVDLAPGEEIVHVLAFD------PDQKLLLASSAGYGFVVTLEDLVARTRAGKAVINLKD-GDEVLPPVPVE 646 (742)
T ss_pred CCCcChhhhcCCCCCceEEEEEEEc------CCcEEEEEECCCcEEEEEhhhccccCCCCeEEEEeCC-CCEEEEEEEeC
Confidence 111 12223 233444444321 1236999999998888877532111111133344442 34455555431
Q ss_pred eccCCCceEEEEEECCCeEEEEe
Q 002318 176 ASLSNGTRYYVMAVTPTRLYSFT 198 (936)
Q Consensus 176 ~~~~~~~~~~i~ast~~rly~f~ 198 (936)
++ ..++++|...+...|.
T Consensus 647 ----~~-d~I~liT~~G~~irf~ 664 (742)
T PRK05561 647 ----DD-DHLAAITSNGRLLVFP 664 (742)
T ss_pred ----CC-CEEEEEeCCCcEEEEE
Confidence 22 3577777778887775
No 306
>TIGR01062 parC_Gneg DNA topoisomerase IV, A subunit, proteobacterial. Operationally, topoisomerase IV is a type II topoisomerase required for the decatenation of chromosome segregation. Not every bacterium has both a topo II and a topo IV. The topo IV families of the Gram-positive bacteria and the Gram-negative bacteria appear not to represent a single clade among the type II topoisomerases, and are represented by separate models for this reason.
Probab=56.42 E-value=3.7e+02 Score=33.65 Aligned_cols=156 Identities=12% Similarity=0.102 Sum_probs=89.7
Q ss_pred eEEEEeCCEEEEEecCCeEEEEeCCCCCceeeEcCCCCCCccceeEEEeCCCCCeEEEEeecCCCccEEEEecCC-----
Q 002318 25 TCMSAGNDVIVLGTSKGWLIRHDFGAGDSYDIDLSAGRPGEQSIHKVFVDPGGSHCIATIVGSGGAETFYTHAKW----- 99 (936)
Q Consensus 25 ~~l~v~~n~l~l~~~~g~l~ridl~~~~~~~~~l~~~~~~~~~i~~i~lDp~G~hlli~~~~~~~g~~~Y~~~~~----- 99 (936)
..+.....++++.+.+|.|-|..+..-...-+.+. . ++.+..++.-.+..++++-|+ +|..|-+....
T Consensus 488 ~~~i~~e~v~VilTk~G~IKr~~~~~~~~saikLK---e-gD~L~~~~~~~t~d~LllfTs---~Gr~yrf~v~eIP~GR 560 (735)
T TIGR01062 488 IDMIPKEPVTIILSKMGWVRSAKGHDIDLSTLKYK---A-GDSEKAIIEGKSNQKVVFIDS---TGRSYALDPDNLPSAR 560 (735)
T ss_pred hhcccCcceEEEEecCCEEEeccccccchhccCcC---C-CCeEEEEEEecCCCEEEEEEC---CCeEEEEEhHhcCcCc
Confidence 44556788999999999999997721111112221 1 356777777667777888887 79988765321
Q ss_pred CC---ceeccCC-CCceEEEEEecCCCCCCCCcceEEEEcCCCcEEEEEEecCCcccceeeEEeeeCCCCCceeeEEEEe
Q 002318 100 SK---PRVLSKL-KGLVVNAVAWNRQQITEASTKEIILGTDTGQLHEMAVDEKDKREKYIKLLFELNELPEAFMGLQMET 175 (936)
Q Consensus 100 ~k---~k~L~kl-kg~~I~sVaw~~~~~~~~st~~iLiGt~~G~i~e~~i~~~~~~~~~~k~v~~l~~~~~~I~gi~~~~ 175 (936)
.+ .+.+-++ .|-.|.++...++ ...+|+.|++|..+.+.+..-...-+.-|.+..+++. ..+.++...
T Consensus 561 ~aGgpV~~~L~L~~gE~Iv~~~~v~~------~~~lLlaT~~GyGKrt~lse~~~~~RaGKgvi~Lk~~-d~lv~v~~v- 632 (735)
T TIGR01062 561 GQGEPLTGKLLLPIGATITNILMYSP------NQLLLMASDAGYGFLCNFNDLIARNKAGKALINLPEN-ASVIAPLPV- 632 (735)
T ss_pred cCCceeEeeecCCCCCEEEEEEEecC------CcEEEEEEcCCcEEEEEhHhccccCcCCeEEEEeCCC-CEEEEEEEE-
Confidence 11 1111112 3445555554421 2369999999998888774321111222444455542 234443332
Q ss_pred eccCCCceEEEEEECCCeEEEEe
Q 002318 176 ASLSNGTRYYVMAVTPTRLYSFT 198 (936)
Q Consensus 176 ~~~~~~~~~~i~ast~~rly~f~ 198 (936)
.++...++++|...++..|.
T Consensus 633 ---~~~dd~V~liT~~GrlLrf~ 652 (735)
T TIGR01062 633 ---NGDSDMIAAITEAGRMLVFP 652 (735)
T ss_pred ---cCCCCEEEEEeCCCcEEEEE
Confidence 12223577778888998885
No 307
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=56.29 E-value=35 Score=35.70 Aligned_cols=56 Identities=11% Similarity=0.109 Sum_probs=39.1
Q ss_pred cCCcceehhHHHHHhhcCCCceeEEEEeCCEEEEEecCCeEEEEeC-CCCCceeeEcC
Q 002318 3 LMRQVFQVDVLERYAAKGRGVITCMSAGNDVIVLGTSKGWLIRHDF-GAGDSYDIDLS 59 (936)
Q Consensus 3 ~~~~~f~~~~~~~~~~~~~~~i~~l~v~~n~l~l~~~~g~l~ridl-~~~~~~~~~l~ 59 (936)
|-+.+|.|.+.+-.-+..||- .|+..+.|+-+-....|+|++.|+ .+....+|.+|
T Consensus 196 nr~~i~dlrk~~~~e~~~PDG-m~ID~eG~L~Va~~ng~~V~~~dp~tGK~L~eiklP 252 (310)
T KOG4499|consen 196 NRKVIFDLRKSQPFESLEPDG-MTIDTEGNLYVATFNGGTVQKVDPTTGKILLEIKLP 252 (310)
T ss_pred CcceeEEeccCCCcCCCCCCc-ceEccCCcEEEEEecCcEEEEECCCCCcEEEEEEcC
Confidence 456788888764443444455 566665444444446789999999 88888899998
No 308
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=56.24 E-value=3e+02 Score=32.49 Aligned_cols=100 Identities=12% Similarity=0.099 Sum_probs=55.3
Q ss_pred EEEEEecCCeEEEEeC--CCCCceeeEcCCCC--CCccceeEEEeCCCCCeEEEEeecCCCccEEEEecCCCCcee-ccC
Q 002318 33 VIVLGTSKGWLIRHDF--GAGDSYDIDLSAGR--PGEQSIHKVFVDPGGSHCIATIVGSGGAETFYTHAKWSKPRV-LSK 107 (936)
Q Consensus 33 ~l~l~~~~g~l~ridl--~~~~~~~~~l~~~~--~~~~~i~~i~lDp~G~hlli~~~~~~~g~~~Y~~~~~~k~k~-L~k 107 (936)
.-++|++++.|+|||. +..+ .+...... .....-..+-.-..| |+.|.+. .|+.--..+.-.++|. |+-
T Consensus 396 ~TlvGLs~n~vfriDpRv~~~~--kl~~~q~kqy~~k~nFsc~aTT~sG-~IvvgS~---~GdIRLYdri~~~AKTAlPg 469 (644)
T KOG2395|consen 396 QTLVGLSDNSVFRIDPRVQGKN--KLAVVQSKQYSTKNNFSCFATTESG-YIVVGSL---KGDIRLYDRIGRRAKTALPG 469 (644)
T ss_pred ccEEeecCCceEEecccccCcc--eeeeeeccccccccccceeeecCCc-eEEEeec---CCcEEeehhhhhhhhhcccc
Confidence 3489999999999999 3332 12111110 001122222223334 4555555 5665333333334454 444
Q ss_pred CCCceEEEEEecCCCCCCCCcceEEEEcCCCcEEEEEEe
Q 002318 108 LKGLVVNAVAWNRQQITEASTKEIILGTDTGQLHEMAVD 146 (936)
Q Consensus 108 lkg~~I~sVaw~~~~~~~~st~~iLiGt~~G~i~e~~i~ 146 (936)
-|-.|+.|--. ..|..|+||-+--|+.+...
T Consensus 470 -LG~~I~hVdvt-------adGKwil~Tc~tyLlLi~t~ 500 (644)
T KOG2395|consen 470 -LGDAIKHVDVT-------ADGKWILATCKTYLLLIDTL 500 (644)
T ss_pred -cCCceeeEEee-------ccCcEEEEecccEEEEEEEe
Confidence 37889888765 35789999988666655543
No 309
>PF11793 FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A.
Probab=56.20 E-value=3 Score=35.18 Aligned_cols=42 Identities=31% Similarity=0.638 Sum_probs=17.7
Q ss_pred cccccccchhhhhcccccccccccCCCCCCCCEEEE---cCCChhHHHhHHHHHhhcCC
Q 002318 833 DEDCGVCRRKILVAGRDYRMARGYASVGPMAPFYVF---PCGHAFHAQCLIAHVTQCTN 888 (936)
Q Consensus 833 ~~~C~~C~k~L~~~~~~~~~~~~~~~~~~~~~fvvF---pCgH~fH~~CL~~~~~~~~~ 888 (936)
+..|.+|...+...+ + .+-++= .|++.||..||.+......+
T Consensus 2 ~~~C~IC~~~~~~~~---~-----------~p~~~C~n~~C~~~fH~~CL~~wf~~~~~ 46 (70)
T PF11793_consen 2 ELECGICYSYRLDDG---E-----------IPDVVCPNPSCGKKFHLLCLSEWFLSLEK 46 (70)
T ss_dssp --S-SSS--SS-TT-------------------B--S-TT----B-SGGGHHHHHHHHS
T ss_pred CCCCCcCCcEecCCC---C-----------cCceEcCCcccCCHHHHHHHHHHHHHccc
Confidence 457999998766311 1 033333 59999999999998865544
No 310
>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=56.19 E-value=3.2e+02 Score=33.64 Aligned_cols=78 Identities=17% Similarity=0.250 Sum_probs=44.5
Q ss_pred HhHHHHHHHHHhcCCccccccccCcCCCCc-chhHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHH
Q 002318 750 ENIRKAIAFLKETDGLLKIEDILPFFPDFA-LIDDFKEAICSSLDDYNKQIEQLK------QEMNDATHGADNIRNDISA 822 (936)
Q Consensus 750 ~~i~~~l~~L~~~~~~L~i~diL~~~p~~~-~I~~~Kd~I~~~L~~y~~~i~~l~------~~m~~~~~~~~~i~~~i~~ 822 (936)
.-+..+++||.+.+ ...-.++|.|+.+-+ +.+++|..|+.-|-+--.+|..-+ -.+-+++....+++.-+..
T Consensus 396 tvV~~ll~fisD~N-~~aas~vl~FvrE~iek~p~Lr~~ii~~l~~~~~~irS~ki~rgalwi~GeYce~~~~i~~~~k~ 474 (948)
T KOG1058|consen 396 TVVSLLLDFISDSN-EAAASDVLMFVREAIEKFPNLRASIIEKLLETFPQIRSSKICRGALWILGEYCEGLSEIQSVIKI 474 (948)
T ss_pred HHHHHHHHHhccCC-HHHHHHHHHHHHHHHHhCchHHHHHHHHHHHhhhhhcccccchhHHHHHHHHHhhhHHHHHHHHH
Confidence 34566778887765 344556777766543 567788877766655545554433 2234455555555554444
Q ss_pred HhcccE
Q 002318 823 LAQRYA 828 (936)
Q Consensus 823 ~~~r~~ 828 (936)
.++..+
T Consensus 475 i~~slG 480 (948)
T KOG1058|consen 475 IRQSLG 480 (948)
T ss_pred HHHhcc
Confidence 444433
No 311
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=55.87 E-value=61 Score=34.91 Aligned_cols=109 Identities=13% Similarity=0.200 Sum_probs=65.6
Q ss_pred CceeEEEEeCCEE-EEEecCCeEEEEeC-CCCC-ceeeEcCCCCCCccceeE-EEe-CCCCCeEEEEeecCCCccEE-EE
Q 002318 22 GVITCMSAGNDVI-VLGTSKGWLIRHDF-GAGD-SYDIDLSAGRPGEQSIHK-VFV-DPGGSHCIATIVGSGGAETF-YT 95 (936)
Q Consensus 22 ~~i~~l~v~~n~l-~l~~~~g~l~ridl-~~~~-~~~~~l~~~~~~~~~i~~-i~l-Dp~G~hlli~~~~~~~g~~~-Y~ 95 (936)
++|.|+.-..|-+ ++.+..+.|..+++ .... +.++..+.......+.+. -|- ...|+.+....+ +... |=
T Consensus 124 g~i~cvew~Pns~klasm~dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgnqv~tt~d----~tl~~~D 199 (370)
T KOG1007|consen 124 GKINCVEWEPNSDKLASMDDNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGNQVATTSD----STLQFWD 199 (370)
T ss_pred CceeeEEEcCCCCeeEEeccCceEEEEcccCcchheeecccccccccceecccccCCCCccceEEEeCC----CcEEEEE
Confidence 5799999998876 77778899999999 4333 555555433221111111 111 235655555444 4444 44
Q ss_pred ecCCCCceeccCCCCceEEEEEecCCCCCCCCcceEEE-EcCCCcE
Q 002318 96 HAKWSKPRVLSKLKGLVVNAVAWNRQQITEASTKEIIL-GTDTGQL 140 (936)
Q Consensus 96 ~~~~~k~k~L~klkg~~I~sVaw~~~~~~~~st~~iLi-Gt~~G~i 140 (936)
.+..++.-.+.+-.|..++.+-+|+.. .-+|+ |+.+|-|
T Consensus 200 ~RT~~~~~sI~dAHgq~vrdlDfNpnk------q~~lvt~gDdgyv 239 (370)
T KOG1007|consen 200 LRTMKKNNSIEDAHGQRVRDLDFNPNK------QHILVTCGDDGYV 239 (370)
T ss_pred ccchhhhcchhhhhcceeeeccCCCCc------eEEEEEcCCCccE
Confidence 444455666777788999999999542 24444 4566744
No 312
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=55.85 E-value=1.7e+02 Score=31.92 Aligned_cols=123 Identities=11% Similarity=0.099 Sum_probs=66.8
Q ss_pred CCEEEEEecCCeEEEEeC-CCCCceeeEcCCCCCCccceeEEEeCCCCCeEEEEeecCCCccEEEEecCCCC-ceeccCC
Q 002318 31 NDVIVLGTSKGWLIRHDF-GAGDSYDIDLSAGRPGEQSIHKVFVDPGGSHCIATIVGSGGAETFYTHAKWSK-PRVLSKL 108 (936)
Q Consensus 31 ~n~l~l~~~~g~l~ridl-~~~~~~~~~l~~~~~~~~~i~~i~lDp~G~hlli~~~~~~~g~~~Y~~~~~~k-~k~L~kl 108 (936)
++.++-+-.+.+|.-||. .+..+.+...+ ..-|+-+..--.|-.++.+ . +.+|..--+...... ++...
T Consensus 102 ~s~i~S~gtDk~v~~wD~~tG~~~rk~k~h-----~~~vNs~~p~rrg~~lv~S-g-sdD~t~kl~D~R~k~~~~t~~-- 172 (338)
T KOG0265|consen 102 GSHILSCGTDKTVRGWDAETGKRIRKHKGH-----TSFVNSLDPSRRGPQLVCS-G-SDDGTLKLWDIRKKEAIKTFE-- 172 (338)
T ss_pred CCEEEEecCCceEEEEecccceeeehhccc-----cceeeecCccccCCeEEEe-c-CCCceEEEEeecccchhhccc--
Confidence 344444445557777777 55555555554 1223333322235544444 3 236766555544332 22221
Q ss_pred CCceEEEEEecCCCCCCCCcceEEEEcCCCcEEEEEEecCCcccceeeEEeeeCCCCCceeeEEEEe
Q 002318 109 KGLVVNAVAWNRQQITEASTKEIILGTDTGQLHEMAVDEKDKREKYIKLLFELNELPEAFMGLQMET 175 (936)
Q Consensus 109 kg~~I~sVaw~~~~~~~~st~~iLiGt~~G~i~e~~i~~~~~~~~~~k~v~~l~~~~~~I~gi~~~~ 175 (936)
--+.+++|+|+.. +-+++.|.=++.|=. ++.++ -.-+|.+.+-..||+|+...+
T Consensus 173 ~kyqltAv~f~d~------s~qv~sggIdn~ikv--Wd~r~-----~d~~~~lsGh~DtIt~lsls~ 226 (338)
T KOG0265|consen 173 NKYQLTAVGFKDT------SDQVISGGIDNDIKV--WDLRK-----NDGLYTLSGHADTITGLSLSR 226 (338)
T ss_pred cceeEEEEEeccc------ccceeeccccCceee--ecccc-----CcceEEeecccCceeeEEecc
Confidence 1379999999932 127777876665432 22221 133577776567899999875
No 313
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=55.50 E-value=2.9e+02 Score=29.60 Aligned_cols=111 Identities=14% Similarity=0.179 Sum_probs=67.8
Q ss_pred eEEEEeC---CEEEEEecCCeEEEEeC-CCCCceeeEcCCCCCCccceeEEEeCCCCCeEEEEeecCCCccEEEEecCCC
Q 002318 25 TCMSAGN---DVIVLGTSKGWLIRHDF-GAGDSYDIDLSAGRPGEQSIHKVFVDPGGSHCIATIVGSGGAETFYTHAKWS 100 (936)
Q Consensus 25 ~~l~v~~---n~l~l~~~~g~l~ridl-~~~~~~~~~l~~~~~~~~~i~~i~lDp~G~hlli~~~~~~~g~~~Y~~~~~~ 100 (936)
+=+.|-| -.+++|.+.|++.-+|. .++-.-|-.+. .+|..--+= -|..+.+-.- +|..|++..++-
T Consensus 14 spLVV~~dskT~v~igSHs~~~~avd~~sG~~~We~ilg------~RiE~sa~v-vgdfVV~GCy---~g~lYfl~~~tG 83 (354)
T KOG4649|consen 14 SPLVVCNDSKTLVVIGSHSGIVIAVDPQSGNLIWEAILG------VRIECSAIV-VGDFVVLGCY---SGGLYFLCVKTG 83 (354)
T ss_pred CcEEEecCCceEEEEecCCceEEEecCCCCcEEeehhhC------ceeeeeeEE-ECCEEEEEEc---cCcEEEEEecch
Confidence 4567777 57899999999999999 44433233232 233322221 4777777666 699988886553
Q ss_pred -C---ceeccCCCCceEEEEEecCCCCCCCCcceEEEEcCCCcEEEEEEecCCcccceeeEEeeeC
Q 002318 101 -K---PRVLSKLKGLVVNAVAWNRQQITEASTKEIILGTDTGQLHEMAVDEKDKREKYIKLLFELN 162 (936)
Q Consensus 101 -k---~k~L~klkg~~I~sVaw~~~~~~~~st~~iLiGt~~G~i~e~~i~~~~~~~~~~k~v~~l~ 162 (936)
+ ...+. .|++=|-. +.++|-|-+|+.+|..|-..... -+-||++.
T Consensus 84 s~~w~f~~~~-----~vk~~a~~-----d~~~glIycgshd~~~yalD~~~-------~~cVyksk 132 (354)
T KOG4649|consen 84 SQIWNFVILE-----TVKVRAQC-----DFDGGLIYCGSHDGNFYALDPKT-------YGCVYKSK 132 (354)
T ss_pred hheeeeeehh-----hhccceEE-----cCCCceEEEecCCCcEEEecccc-------cceEEecc
Confidence 1 12222 22222222 23678999999999998875432 35667654
No 314
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=55.41 E-value=2.2e+02 Score=31.01 Aligned_cols=123 Identities=11% Similarity=0.098 Sum_probs=77.6
Q ss_pred eeeEcCCCCCCccceeEEEeCCCCCeEEEEeecCCCccEEEEecC---CCCceeccCCCCceEEEEEecCCCCCCCCcce
Q 002318 54 YDIDLSAGRPGEQSIHKVFVDPGGSHCIATIVGSGGAETFYTHAK---WSKPRVLSKLKGLVVNAVAWNRQQITEASTKE 130 (936)
Q Consensus 54 ~~~~l~~~~~~~~~i~~i~lDp~G~hlli~~~~~~~g~~~Y~~~~---~~k~k~L~klkg~~I~sVaw~~~~~~~~st~~ 130 (936)
.++++|.+ +++.|..+-+.|....+++++. =+|.+-.+..+ ...+|.+..+ +-+|-+|+|+++ +-.
T Consensus 18 kd~ev~~p--P~DsIS~l~FSP~~~~~~~A~S--WD~tVR~wevq~~g~~~~ka~~~~-~~PvL~v~Wsdd------gsk 86 (347)
T KOG0647|consen 18 KDYEVPNP--PEDSISALAFSPQADNLLAAGS--WDGTVRIWEVQNSGQLVPKAQQSH-DGPVLDVCWSDD------GSK 86 (347)
T ss_pred cceecCCC--cccchheeEeccccCceEEecc--cCCceEEEEEecCCcccchhhhcc-CCCeEEEEEccC------Cce
Confidence 45667644 3679999999998777776643 15666544332 2234444443 459999999943 237
Q ss_pred EEEEcCCCcEEEEEEecCCcccceeeEEeeeCCCCCceeeEEEEeeccCCCceEEEEEEC--CCeEEEEecC
Q 002318 131 IILGTDTGQLHEMAVDEKDKREKYIKLLFELNELPEAFMGLQMETASLSNGTRYYVMAVT--PTRLYSFTGF 200 (936)
Q Consensus 131 iLiGt~~G~i~e~~i~~~~~~~~~~k~v~~l~~~~~~I~gi~~~~~~~~~~~~~~i~ast--~~rly~f~~~ 200 (936)
+..|..+|.+=...|..+. ..+| ...+ +||..+.|..-+ .+-.++|+ .+.|-.|+-+
T Consensus 87 Vf~g~~Dk~~k~wDL~S~Q-----~~~v-~~Hd--~pvkt~~wv~~~-----~~~cl~TGSWDKTlKfWD~R 145 (347)
T KOG0647|consen 87 VFSGGCDKQAKLWDLASGQ-----VSQV-AAHD--APVKTCHWVPGM-----NYQCLVTGSWDKTLKFWDTR 145 (347)
T ss_pred EEeeccCCceEEEEccCCC-----eeee-eecc--cceeEEEEecCC-----CcceeEecccccceeecccC
Confidence 8889999988888776641 3333 4555 679999997421 23344454 5556557654
No 315
>KOG0317 consensus Predicted E3 ubiquitin ligase, integral peroxisomal membrane protein [Posttranslational modification, protein turnover, chaperones]
Probab=54.94 E-value=7.5 Score=41.49 Aligned_cols=37 Identities=22% Similarity=0.636 Sum_probs=27.6
Q ss_pred eecccccccccchhhhhcccccccccccCCCCCCCCEEEEcCCChhHHHhHHHHHh
Q 002318 829 VIDRDEDCGVCRRKILVAGRDYRMARGYASVGPMAPFYVFPCGHAFHAQCLIAHVT 884 (936)
Q Consensus 829 ~i~~~~~C~~C~k~L~~~~~~~~~~~~~~~~~~~~~fvvFpCgH~fH~~CL~~~~~ 884 (936)
+-++..+|.+|=.....+. .-||||.|...|+.....
T Consensus 235 i~~a~~kC~LCLe~~~~pS-------------------aTpCGHiFCWsCI~~w~~ 271 (293)
T KOG0317|consen 235 IPEATRKCSLCLENRSNPS-------------------ATPCGHIFCWSCILEWCS 271 (293)
T ss_pred CCCCCCceEEEecCCCCCC-------------------cCcCcchHHHHHHHHHHc
Confidence 3345689999987765521 239999999999988764
No 316
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=54.51 E-value=4.5e+02 Score=31.47 Aligned_cols=122 Identities=16% Similarity=0.201 Sum_probs=64.4
Q ss_pred HHHHcCChhHHHHHHHhh--------hhHHHHHHHHHhcccHHHHHHHHhCC----CCchhhHHhhHHHHHhH------C
Q 002318 517 LLESYGRVEELVFFASLK--------EQHEIVVHHYIQQGEAKKALQMLRKP----AVPIDLQYKFAPDLIML------D 578 (936)
Q Consensus 517 ll~~~g~~e~~l~~a~~~--------~dy~~ll~~yi~~~~~~~AL~~L~~~----~d~~~li~k~~~~Ll~~------~ 578 (936)
++...|.++++|.+-+.. .-.+.-..+|+..|++++|..++..+ ++....+..+...+... .
T Consensus 13 il~e~g~~~~AL~~L~~~~~~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPdn~~Yy~~L~~~~g~~~~~~~~~ 92 (517)
T PF12569_consen 13 ILEEAGDYEEALEHLEKNEKQILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNPDNYDYYRGLEEALGLQLQLSDED 92 (517)
T ss_pred HHHHCCCHHHHHHHHHhhhhhCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHhhhccccccc
Confidence 666677777777665442 23455678999999999999887654 34323222333333111 1
Q ss_pred hHHHHHHHHcc----CCCCCCcchhHhhhcCCCCCCCCChHHHHHHHHHHHhhcCCCCHhHHHHHHHHhhcC
Q 002318 579 AYETVESWMTT----NNLNPRKLIPAMMRYSSEPHAKNETHEVIKYLEFCVHRLHNEDPGVHNLLLSLYAKQ 646 (936)
Q Consensus 579 p~~ti~ll~~~----~~ld~~~li~~L~~~~~~~~~~~~~~~~~~YLe~li~~~~~~~~~~hn~ll~Ly~~~ 646 (936)
.+...+++-+. +.-++.+-+| +.+... ..-...+-.||...+.+ .-|.+.+.+-.||...
T Consensus 93 ~~~~~~~y~~l~~~yp~s~~~~rl~--L~~~~g---~~F~~~~~~yl~~~l~K---gvPslF~~lk~Ly~d~ 156 (517)
T PF12569_consen 93 VEKLLELYDELAEKYPRSDAPRRLP--LDFLEG---DEFKERLDEYLRPQLRK---GVPSLFSNLKPLYKDP 156 (517)
T ss_pred HHHHHHHHHHHHHhCccccchhHhh--cccCCH---HHHHHHHHHHHHHHHhc---CCchHHHHHHHHHcCh
Confidence 23333333222 1222222222 111110 01123466777777654 2467888888899854
No 317
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=54.49 E-value=1.2e+02 Score=32.04 Aligned_cols=112 Identities=13% Similarity=0.203 Sum_probs=70.0
Q ss_pred EEeCCEEEEEecCCeEEEEeCCCCCceeeEcCCCCCCccceeEE-EeCCC-CCeEEEEeecCCCccEEEEec---CCCCc
Q 002318 28 SAGNDVIVLGTSKGWLIRHDFGAGDSYDIDLSAGRPGEQSIHKV-FVDPG-GSHCIATIVGSGGAETFYTHA---KWSKP 102 (936)
Q Consensus 28 ~v~~n~l~l~~~~g~l~ridl~~~~~~~~~l~~~~~~~~~i~~i-~lDp~-G~hlli~~~~~~~g~~~Y~~~---~~~k~ 102 (936)
....+-|+-..++|+|-.+...++........+. +-.++|-++ |..|. |..|..|+= +|.+..+.. .++|.
T Consensus 20 DyygkrlATcsSD~tVkIf~v~~n~~s~ll~~L~-Gh~GPVwqv~wahPk~G~iLAScsY---DgkVIiWke~~g~w~k~ 95 (299)
T KOG1332|consen 20 DYYGKRLATCSSDGTVKIFEVRNNGQSKLLAELT-GHSGPVWKVAWAHPKFGTILASCSY---DGKVIIWKEENGRWTKA 95 (299)
T ss_pred hhhcceeeeecCCccEEEEEEcCCCCceeeeEec-CCCCCeeEEeecccccCcEeeEeec---CceEEEEecCCCchhhh
Confidence 3455667777788887777773333211111111 113566664 77886 998998888 899987765 34443
Q ss_pred eeccCCCCceEEEEEecCCCCCCCCcceEEEEcCCCcEEEEEEecC
Q 002318 103 RVLSKLKGLVVNAVAWNRQQITEASTKEIILGTDTGQLHEMAVDEK 148 (936)
Q Consensus 103 k~L~klkg~~I~sVaw~~~~~~~~st~~iLiGt~~G~i~e~~i~~~ 148 (936)
..-.. ..-.|.||+|-|..+ .-.+.+|+++|.|--...+..
T Consensus 96 ~e~~~-h~~SVNsV~waphey----gl~LacasSDG~vsvl~~~~~ 136 (299)
T KOG1332|consen 96 YEHAA-HSASVNSVAWAPHEY----GLLLACASSDGKVSVLTYDSS 136 (299)
T ss_pred hhhhh-hcccceeeccccccc----ceEEEEeeCCCcEEEEEEcCC
Confidence 32222 224899999996543 336677899999887777654
No 318
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=54.41 E-value=1.2e+02 Score=33.78 Aligned_cols=95 Identities=15% Similarity=0.184 Sum_probs=64.7
Q ss_pred CceeEEEE--eCCEEEEEecCCeEEEEeCCCCCceeeEcCCCCCCccceeEEEeCCCCCeEEEEeecCCCccEEEEecCC
Q 002318 22 GVITCMSA--GNDVIVLGTSKGWLIRHDFGAGDSYDIDLSAGRPGEQSIHKVFVDPGGSHCIATIVGSGGAETFYTHAKW 99 (936)
Q Consensus 22 ~~i~~l~v--~~n~l~l~~~~g~l~ridl~~~~~~~~~l~~~~~~~~~i~~i~lDp~G~hlli~~~~~~~g~~~Y~~~~~ 99 (936)
.+|-|++. .|.+++-|-.+|+|+.-|+...+ .+.+-.-....+.|.++-+.|+-..++++|+ +|-+.++...-
T Consensus 106 SNIF~L~F~~~N~~~~SG~~~~~VI~HDiEt~q--si~V~~~~~~~~~VY~m~~~P~DN~~~~~t~---~~~V~~~D~Rd 180 (609)
T KOG4227|consen 106 SNIFSLEFDLENRFLYSGERWGTVIKHDIETKQ--SIYVANENNNRGDVYHMDQHPTDNTLIVVTR---AKLVSFIDNRD 180 (609)
T ss_pred cceEEEEEccCCeeEecCCCcceeEeeecccce--eeeeecccCcccceeecccCCCCceEEEEec---CceEEEEeccC
Confidence 35777776 46788999999999999993333 2333322222468999999999888888888 89888887543
Q ss_pred CC-c--eeccCCCCceEEEEEecCC
Q 002318 100 SK-P--RVLSKLKGLVVNAVAWNRQ 121 (936)
Q Consensus 100 ~k-~--k~L~klkg~~I~sVaw~~~ 121 (936)
.+ + -.+.--.|...-+|.|+|.
T Consensus 181 ~~~~~~~~~~AN~~~~F~t~~F~P~ 205 (609)
T KOG4227|consen 181 RQNPISLVLPANSGKNFYTAEFHPE 205 (609)
T ss_pred CCCCCceeeecCCCccceeeeecCC
Confidence 32 1 1122224667888999943
No 319
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=54.36 E-value=31 Score=33.33 Aligned_cols=93 Identities=19% Similarity=0.226 Sum_probs=53.1
Q ss_pred HchhhHHHHHHh----cCC-hh--hHHHHHHHHHHHHHhcCCHHHHHHHHHHhcCC---CChHHH-----HHHhcCcChH
Q 002318 372 LDMKEYAAALAN----CRD-PL--QRDQVYLVQAEAAFATKDFHRAASFYAKINYI---LSFEEI-----TLKFISVSEQ 436 (936)
Q Consensus 372 l~~~~f~~Al~~----~~~-~~--~~~~I~~~~~~~L~~~g~y~~Aa~~y~~~~~~---~~~E~v-----~lkFl~~~~~ 436 (936)
+..++...|-+. .++ |. .-.......|..++..|+|++|...|.+.... ..+..+ +.-.++.++.
T Consensus 22 ~~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~ 101 (145)
T PF09976_consen 22 LQAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQY 101 (145)
T ss_pred HHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCH
Confidence 346666666552 333 32 34566777899999999999999999887621 122222 2233456666
Q ss_pred HHHHHHHHHHhhcccCchhHHHHHHHHHHHHHHH
Q 002318 437 DALRTFLLRKLDNLAKDDKCQITMISTWATELYL 470 (936)
Q Consensus 437 ~~L~~YL~~~l~~l~~~~~~~~~lL~~Wl~ely~ 470 (936)
+.-...|.. .. +.........+..++|+
T Consensus 102 d~Al~~L~~----~~--~~~~~~~~~~~~Gdi~~ 129 (145)
T PF09976_consen 102 DEALATLQQ----IP--DEAFKALAAELLGDIYL 129 (145)
T ss_pred HHHHHHHHh----cc--CcchHHHHHHHHHHHHH
Confidence 655555543 11 12223344455556665
No 320
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=54.18 E-value=79 Score=36.70 Aligned_cols=124 Identities=11% Similarity=0.151 Sum_probs=71.7
Q ss_pred ccceeEEEeCCCCCeEEEEeecCCCccEEEEec-----CCCCceeccCCCCceEEEEEecCCCCCCCCcceEEEEc--CC
Q 002318 65 EQSIHKVFVDPGGSHCIATIVGSGGAETFYTHA-----KWSKPRVLSKLKGLVVNAVAWNRQQITEASTKEIILGT--DT 137 (936)
Q Consensus 65 ~~~i~~i~lDp~G~hlli~~~~~~~g~~~Y~~~-----~~~k~k~L~klkg~~I~sVaw~~~~~~~~st~~iLiGt--~~ 137 (936)
.-.|.-+-+||.|..++.-+- +-.+.++.. +..-+|.|.---++.|.|++|.+. ...||+-+ ..
T Consensus 167 tk~Vsal~~Dp~GaR~~sGs~---Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~T------g~~iLvvsg~aq 237 (641)
T KOG0772|consen 167 TKIVSALAVDPSGARFVSGSL---DYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSVT------GDQILVVSGSAQ 237 (641)
T ss_pred ceEEEEeeecCCCceeeeccc---cceEEEEecccccccchhhhccCcccccccceeeecCC------CCeEEEEecCcc
Confidence 467888999999987765332 222222322 233467777667899999999841 23555543 33
Q ss_pred CcEEEEE---EecCCcccceeeEEeeeCCCCCceeeEEEEeeccCCCceEEEEEECCCeEEEEecCC
Q 002318 138 GQLHEMA---VDEKDKREKYIKLLFELNELPEAFMGLQMETASLSNGTRYYVMAVTPTRLYSFTGFG 201 (936)
Q Consensus 138 G~i~e~~---i~~~~~~~~~~k~v~~l~~~~~~I~gi~~~~~~~~~~~~~~i~ast~~rly~f~~~~ 201 (936)
..||... +..--+-++|+.-++...+--..++...|... +...++-++-...|--|....
T Consensus 238 akl~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~----~k~~FlT~s~DgtlRiWdv~~ 300 (641)
T KOG0772|consen 238 AKLLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPD----NKEEFLTCSYDGTLRIWDVNN 300 (641)
T ss_pred eeEEccCCceeeeeeccchhhhhhhccCCceeeeeccccccC----cccceEEecCCCcEEEEecCC
Confidence 4333311 10001346888888777642234777788742 234455545566677787644
No 321
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=54.16 E-value=43 Score=36.21 Aligned_cols=48 Identities=13% Similarity=0.161 Sum_probs=39.0
Q ss_pred HHchhhHHHHHHhcCC-----hh--hHHHHHHHHHHHHHhcCCHHHHHHHHHHhc
Q 002318 371 YLDMKEYAAALANCRD-----PL--QRDQVYLVQAEAAFATKDFHRAASFYAKIN 418 (936)
Q Consensus 371 ll~~~~f~~Al~~~~~-----~~--~~~~I~~~~~~~L~~~g~y~~Aa~~y~~~~ 418 (936)
+++.|+|++|+...+. |. .....+...|+.++..|+|++|+..|.+..
T Consensus 153 ~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv 207 (263)
T PRK10803 153 VQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVV 207 (263)
T ss_pred HHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4677999999988653 32 346788999999999999999998877654
No 322
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=54.06 E-value=4.4e+02 Score=31.37 Aligned_cols=69 Identities=14% Similarity=0.160 Sum_probs=44.8
Q ss_pred ceEEEEEecCCCCCCCCcceEEEEcCCCcEEEEEEecCCcccceeeEEeeeCCCCCceeeEEEEeeccCCCceEEEEEEC
Q 002318 111 LVVNAVAWNRQQITEASTKEIILGTDTGQLHEMAVDEKDKREKYIKLLFELNELPEAFMGLQMETASLSNGTRYYVMAVT 190 (936)
Q Consensus 111 ~~I~sVaw~~~~~~~~st~~iLiGt~~G~i~e~~i~~~~~~~~~~k~v~~l~~~~~~I~gi~~~~~~~~~~~~~~i~ast 190 (936)
-.|.|+||++. ...+++|+.||.|.-+....+ ..+..+.+ -..+-|.|.. +.-.+++++.
T Consensus 260 s~v~~ca~sp~------E~kLvlGC~DgSiiLyD~~~~------~t~~~ka~---~~P~~iaWHp-----~gai~~V~s~ 319 (545)
T PF11768_consen 260 SQVICCARSPS------EDKLVLGCEDGSIILYDTTRG------VTLLAKAE---FIPTLIAWHP-----DGAIFVVGSE 319 (545)
T ss_pred CcceEEecCcc------cceEEEEecCCeEEEEEcCCC------eeeeeeec---ccceEEEEcC-----CCcEEEEEcC
Confidence 46888899843 348999999999998876543 22322333 3358888873 2245666556
Q ss_pred CCeEEEEec
Q 002318 191 PTRLYSFTG 199 (936)
Q Consensus 191 ~~rly~f~~ 199 (936)
..-|--|+-
T Consensus 320 qGelQ~FD~ 328 (545)
T PF11768_consen 320 QGELQCFDM 328 (545)
T ss_pred CceEEEEEe
Confidence 677777753
No 323
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=54.05 E-value=1.4e+02 Score=37.81 Aligned_cols=153 Identities=14% Similarity=0.164 Sum_probs=90.3
Q ss_pred ceeEEEEeCCEEEEEecC----CeEEEEeC---CCCCce-eeEcCCC----CCCccceeEEEeCCCCCeEEEEeecCCCc
Q 002318 23 VITCMSAGNDVIVLGTSK----GWLIRHDF---GAGDSY-DIDLSAG----RPGEQSIHKVFVDPGGSHCIATIVGSGGA 90 (936)
Q Consensus 23 ~i~~l~v~~n~l~l~~~~----g~l~ridl---~~~~~~-~~~l~~~----~~~~~~i~~i~lDp~G~hlli~~~~~~~g 90 (936)
.|-+++|+.+..-+|+.. |.+..|+. .++.-. ...+|+. ..-++.|+.++..|.|.++.+.++ +.
T Consensus 15 ~IfSIdv~pdg~~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~~sv~CVR~S~dG~~lAsGSD---D~ 91 (942)
T KOG0973|consen 15 SIFSIDVHPDGVKFATGGQVLDGGIVIWSQDPVLDEKEEKNENLPKHLCTMDDHDGSVNCVRFSPDGSYLASGSD---DR 91 (942)
T ss_pred eEEEEEecCCceeEecCCccccccceeeccccccchhhhhhcccchhheeeccccCceeEEEECCCCCeEeeccC---cc
Confidence 388999999999999866 23335544 222111 1114433 112479999999999999999988 76
Q ss_pred cEEEEecC-------------------CCCceeccCCCCceEEEEEecCCCCCCCCcceEEE-EcCCCcEEEEEEecCCc
Q 002318 91 ETFYTHAK-------------------WSKPRVLSKLKGLVVNAVAWNRQQITEASTKEIIL-GTDTGQLHEMAVDEKDK 150 (936)
Q Consensus 91 ~~~Y~~~~-------------------~~k~k~L~klkg~~I~sVaw~~~~~~~~st~~iLi-Gt~~G~i~e~~i~~~~~ 150 (936)
-..-+... |+....|.. +..+|.-|+|.+.. .+|+ |.-++.|...+-
T Consensus 92 ~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~-H~~DV~Dv~Wsp~~-------~~lvS~s~DnsViiwn~----- 158 (942)
T KOG0973|consen 92 LVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRG-HDSDVLDVNWSPDD-------SLLVSVSLDNSVIIWNA----- 158 (942)
T ss_pred eEEEeeecccCCcccccccccccccceeeEEEEEec-CCCccceeccCCCc-------cEEEEecccceEEEEcc-----
Confidence 65544432 222223322 34589999999531 3444 455666655432
Q ss_pred ccceeeEEeeeCCCCCceeeEEEEeeccCCCceEEEEEECCCeEEEEe
Q 002318 151 REKYIKLLFELNELPEAFMGLQMETASLSNGTRYYVMAVTPTRLYSFT 198 (936)
Q Consensus 151 ~~~~~k~v~~l~~~~~~I~gi~~~~~~~~~~~~~~i~ast~~rly~f~ 198 (936)
+.++.+-.+.+-.+.|-|+.|+.+. +|+.--+.+..|--|.
T Consensus 159 --~tF~~~~vl~~H~s~VKGvs~DP~G-----ky~ASqsdDrtikvwr 199 (942)
T KOG0973|consen 159 --KTFELLKVLRGHQSLVKGVSWDPIG-----KYFASQSDDRTLKVWR 199 (942)
T ss_pred --ccceeeeeeecccccccceEECCcc-----CeeeeecCCceEEEEE
Confidence 1223333344434789999998542 5665555555555564
No 324
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=54.02 E-value=4.7e+02 Score=31.51 Aligned_cols=145 Identities=13% Similarity=0.059 Sum_probs=93.6
Q ss_pred CceeEEEEe--CCEEEEEecCCeEEEEeC-CCCCceeeEcCCCCCCccceeEEEeCCCCCeEEEE-eecCCCccEEEEec
Q 002318 22 GVITCMSAG--NDVIVLGTSKGWLIRHDF-GAGDSYDIDLSAGRPGEQSIHKVFVDPGGSHCIAT-IVGSGGAETFYTHA 97 (936)
Q Consensus 22 ~~i~~l~v~--~n~l~l~~~~g~l~ridl-~~~~~~~~~l~~~~~~~~~i~~i~lDp~G~hlli~-~~~~~~g~~~Y~~~ 97 (936)
+.+.+++.. .+.++-|..+.++..||. .+.-+.-+..+ .+.|..+..++ ..+++ +- +-.+.-++.
T Consensus 250 g~V~~l~~~~~~~~lvsgS~D~t~rvWd~~sg~C~~~l~gh-----~stv~~~~~~~---~~~~sgs~---D~tVkVW~v 318 (537)
T KOG0274|consen 250 GGVWGLAFPSGGDKLVSGSTDKTERVWDCSTGECTHSLQGH-----TSSVRCLTIDP---FLLVSGSR---DNTVKVWDV 318 (537)
T ss_pred CCceeEEEecCCCEEEEEecCCcEEeEecCCCcEEEEecCC-----CceEEEEEccC---ceEeeccC---CceEEEEec
Confidence 457888888 999999999999999999 55544444444 46777777764 23333 22 566667777
Q ss_pred CCCCceeccCCCCceEEEEEecCCCCCCCCcceEEEEcCCCcEEEEEEecCCcccceeeEEeeeCCCCCceeeEEEEeec
Q 002318 98 KWSKPRVLSKLKGLVVNAVAWNRQQITEASTKEIILGTDTGQLHEMAVDEKDKREKYIKLLFELNELPEAFMGLQMETAS 177 (936)
Q Consensus 98 ~~~k~k~L~klkg~~I~sVaw~~~~~~~~st~~iLiGt~~G~i~e~~i~~~~~~~~~~k~v~~l~~~~~~I~gi~~~~~~ 177 (936)
...+.-.+..-.+-.|.+|..+. ..++-|+.+|.|--..+. ..+-+..+.+-.+.|+++.+..
T Consensus 319 ~n~~~l~l~~~h~~~V~~v~~~~--------~~lvsgs~d~~v~VW~~~-------~~~cl~sl~gH~~~V~sl~~~~-- 381 (537)
T KOG0274|consen 319 TNGACLNLLRGHTGPVNCVQLDE--------PLLVSGSYDGTVKVWDPR-------TGKCLKSLSGHTGRVYSLIVDS-- 381 (537)
T ss_pred cCcceEEEeccccccEEEEEecC--------CEEEEEecCceEEEEEhh-------hceeeeeecCCcceEEEEEecC--
Confidence 66554444332456899999982 278899999955444333 2455555554346788886652
Q ss_pred cCCCceEEEEEECCCeEEEEe
Q 002318 178 LSNGTRYYVMAVTPTRLYSFT 198 (936)
Q Consensus 178 ~~~~~~~~i~ast~~rly~f~ 198 (936)
+ ..++=.++.+.+-.|+
T Consensus 382 ---~-~~~~Sgs~D~~IkvWd 398 (537)
T KOG0274|consen 382 ---E-NRLLSGSLDTTIKVWD 398 (537)
T ss_pred ---c-ceEEeeeeccceEeec
Confidence 1 3445445555555564
No 325
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=53.95 E-value=1.5e+02 Score=34.62 Aligned_cols=154 Identities=14% Similarity=0.175 Sum_probs=88.4
Q ss_pred hhHHHHHhhcCCCceeEEEEeCCEEEEEecCCeEEEEeCCCCCce-eeEcCCCCCCccceeEEEeCCCCCeEEEEeecCC
Q 002318 10 VDVLERYAAKGRGVITCMSAGNDVIVLGTSKGWLIRHDFGAGDSY-DIDLSAGRPGEQSIHKVFVDPGGSHCIATIVGSG 88 (936)
Q Consensus 10 ~~~~~~~~~~~~~~i~~l~v~~n~l~l~~~~g~l~ridl~~~~~~-~~~l~~~~~~~~~i~~i~lDp~G~hlli~~~~~~ 88 (936)
+-|.++..+++.+. .-+++.+++.+++|+...++-.+ +|+ .++-+. +.|..---.|.|.-|+.+..
T Consensus 58 ~pt~~h~~~rs~~~----g~~~d~~~i~s~DGkf~il~k~~-rVE~sv~AH~-----~A~~~gRW~~dGtgLlt~GE--- 124 (737)
T KOG1524|consen 58 VPTDMHLGGRSSGG----GKGSDTLLICSNDGRFVILNKSA-RVERSISAHA-----AAISSGRWSPDGAGLLTAGE--- 124 (737)
T ss_pred CCccccccccccCC----CCCcceEEEEcCCceEEEecccc-hhhhhhhhhh-----hhhhhcccCCCCceeeeecC---
Confidence 33444444444322 44678889999999999887621 222 233331 23333334577877777766
Q ss_pred CccEEEEecCCCCcee-ccCCCCceEEEEEecCCCCCCCCcceEEEEcCCCcEEEEEEecCCcccceeeEE-eeeCCCCC
Q 002318 89 GAETFYTHAKWSKPRV-LSKLKGLVVNAVAWNRQQITEASTKEIILGTDTGQLHEMAVDEKDKREKYIKLL-FELNELPE 166 (936)
Q Consensus 89 ~g~~~Y~~~~~~k~k~-L~klkg~~I~sVaw~~~~~~~~st~~iLiGt~~G~i~e~~i~~~~~~~~~~k~v-~~l~~~~~ 166 (936)
||..-.+.++-- .|. |. ..+-.|.||+|.+.. ..| +=|+-|+++..-+..+ .|.+ +.-.+ |
T Consensus 125 DG~iKiWSrsGM-LRStl~-Q~~~~v~c~~W~p~S------~~v-l~c~g~h~~IKpL~~n------~k~i~WkAHD--G 187 (737)
T KOG1524|consen 125 DGVIKIWSRSGM-LRSTVV-QNEESIRCARWAPNS------NSI-VFCQGGHISIKPLAAN------SKIIRWRAHD--G 187 (737)
T ss_pred CceEEEEeccch-HHHHHh-hcCceeEEEEECCCC------Cce-EEecCCeEEEeecccc------cceeEEeccC--c
Confidence 787766654221 111 22 146799999999432 134 4477888888777665 2322 34554 5
Q ss_pred ceeeEEEEeeccCCCceEEEEEEC--CCeEEEEecC
Q 002318 167 AFMGLQMETASLSNGTRYYVMAVT--PTRLYSFTGF 200 (936)
Q Consensus 167 ~I~gi~~~~~~~~~~~~~~i~ast--~~rly~f~~~ 200 (936)
-|..+.|.... . +++|. +.|.--|++.
T Consensus 188 iiL~~~W~~~s-----~--lI~sgGED~kfKvWD~~ 216 (737)
T KOG1524|consen 188 LVLSLSWSTQS-----N--IIASGGEDFRFKIWDAQ 216 (737)
T ss_pred EEEEeecCccc-----c--ceeecCCceeEEeeccc
Confidence 68888887421 2 23343 5566667664
No 326
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=53.38 E-value=26 Score=23.95 Aligned_cols=27 Identities=11% Similarity=0.342 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHhc
Q 002318 392 QVYLVQAEAAFATKDFHRAASFYAKIN 418 (936)
Q Consensus 392 ~I~~~~~~~L~~~g~y~~Aa~~y~~~~ 418 (936)
.+....|..++..|+|++|.+.|.+..
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al 28 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKAL 28 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 456788999999999999999998864
No 327
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=53.03 E-value=2.8e+02 Score=33.35 Aligned_cols=109 Identities=12% Similarity=0.047 Sum_probs=64.5
Q ss_pred CCEEEEEecCCeEEEEeC--CCCCceeeEcCCCCC-CccceeEEEeCCCCCeEEEEeecCCCccEEEEecCCCCceeccC
Q 002318 31 NDVIVLGTSKGWLIRHDF--GAGDSYDIDLSAGRP-GEQSIHKVFVDPGGSHCIATIVGSGGAETFYTHAKWSKPRVLSK 107 (936)
Q Consensus 31 ~n~l~l~~~~g~l~ridl--~~~~~~~~~l~~~~~-~~~~i~~i~lDp~G~hlli~~~~~~~g~~~Y~~~~~~k~k~L~k 107 (936)
..+|++|...|.|...|- .-.+.++.++-.... ....+.-.|+ | |+-+||+.. |+..--.+.....+..-..-
T Consensus 64 eHiLavadE~G~i~l~dt~~~~fr~ee~~lk~~~aH~nAifDl~wa-p-ge~~lVsas--GDsT~r~Wdvk~s~l~G~~~ 139 (720)
T KOG0321|consen 64 EHILAVADEDGGIILFDTKSIVFRLEERQLKKPLAHKNAIFDLKWA-P-GESLLVSAS--GDSTIRPWDVKTSRLVGGRL 139 (720)
T ss_pred cceEEEecCCCceeeecchhhhcchhhhhhcccccccceeEeeccC-C-CceeEEEcc--CCceeeeeeeccceeeccee
Confidence 448999999999999988 222222222211110 1234444555 6 999999875 12222244433332222211
Q ss_pred CCC--ceEEEEEecCCCCCCCCcceEEEEcCCCcEEEEEEecC
Q 002318 108 LKG--LVVNAVAWNRQQITEASTKEIILGTDTGQLHEMAVDEK 148 (936)
Q Consensus 108 lkg--~~I~sVaw~~~~~~~~st~~iLiGt~~G~i~e~~i~~~ 148 (936)
+.| +.++|+||-+.+ .-.|..|..||.|..-.+..+
T Consensus 140 ~~GH~~SvkS~cf~~~n-----~~vF~tGgRDg~illWD~R~n 177 (720)
T KOG0321|consen 140 NLGHTGSVKSECFMPTN-----PAVFCTGGRDGEILLWDCRCN 177 (720)
T ss_pred ecccccccchhhhccCC-----CcceeeccCCCcEEEEEEecc
Confidence 345 589999998543 348999999999988776544
No 328
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=53.00 E-value=7 Score=44.10 Aligned_cols=41 Identities=22% Similarity=0.532 Sum_probs=30.9
Q ss_pred ccccccchhhhhcccccccccccCCCCCCCCEEEEcCCChhHHHhHHHHHhhcCCc
Q 002318 834 EDCGVCRRKILVAGRDYRMARGYASVGPMAPFYVFPCGHAFHAQCLIAHVTQCTNE 889 (936)
Q Consensus 834 ~~C~~C~k~L~~~~~~~~~~~~~~~~~~~~~fvvFpCgH~fH~~CL~~~~~~~~~~ 889 (936)
-.|++|-.++...- +.++--+|.|+||-.|+.+.-..++..
T Consensus 176 PTCpVCLERMD~s~---------------~gi~t~~c~Hsfh~~cl~~w~~~scpv 216 (493)
T KOG0804|consen 176 PTCPVCLERMDSST---------------TGILTILCNHSFHCSCLMKWWDSSCPV 216 (493)
T ss_pred CCcchhHhhcCccc---------------cceeeeecccccchHHHhhcccCcChh
Confidence 47999998887621 156777899999999999876555554
No 329
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=52.87 E-value=2.5e+02 Score=30.11 Aligned_cols=39 Identities=18% Similarity=0.149 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHhcCCCChHHHHHH
Q 002318 391 DQVYLVQAEAAFATKDFHRAASFYAKINYILSFEEITLK 429 (936)
Q Consensus 391 ~~I~~~~~~~L~~~g~y~~Aa~~y~~~~~~~~~E~v~lk 429 (936)
..|+..+|-.|-..|.|++|.++|......+|-..+++|
T Consensus 86 ~RV~~lkam~lEa~~~~~~A~e~y~~lL~ddpt~~v~~K 124 (289)
T KOG3060|consen 86 KRVGKLKAMLLEATGNYKEAIEYYESLLEDDPTDTVIRK 124 (289)
T ss_pred hhHHHHHHHHHHHhhchhhHHHHHHHHhccCcchhHHHH
Confidence 478899999999999999999999987632444444444
No 330
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=52.77 E-value=1.1e+02 Score=37.71 Aligned_cols=112 Identities=17% Similarity=0.261 Sum_probs=67.3
Q ss_pred HHHHHhhcCCCceeEEEEeCCEEEEEe--cCCeEEEE-eCC-CCCc---eeeEcCCCCCCccceeEEEeCCCCCeEEEEe
Q 002318 12 VLERYAAKGRGVITCMSAGNDVIVLGT--SKGWLIRH-DFG-AGDS---YDIDLSAGRPGEQSIHKVFVDPGGSHCIATI 84 (936)
Q Consensus 12 ~~~~~~~~~~~~i~~l~v~~n~l~l~~--~~g~l~ri-dl~-~~~~---~~~~l~~~~~~~~~i~~i~lDp~G~hlli~~ 84 (936)
++.+.++ ++|.+++.|-.|++. ..|+|+.| |.. -++. ..+.=+ -.+|..+-..++|..++...
T Consensus 201 ~~~Htf~-----~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH-----~~~V~~L~fS~~G~~LlSGG 270 (792)
T KOG1963|consen 201 TVHHTFN-----ITCVALSPNERYLAAGDSDGRILVWRDFGSSDDSETCTLLHWH-----HDEVNSLSFSSDGAYLLSGG 270 (792)
T ss_pred hhhhccc-----ceeEEeccccceEEEeccCCcEEEEeccccccccccceEEEec-----ccccceeEEecCCceEeecc
Confidence 4455553 799999888776665 67999998 553 1221 122223 24666677777777766543
Q ss_pred ecCCCccEEEEecCCCCceeccCCCCceEEEEEecCCCCCCCCcceEEEEcCCCcEEEE
Q 002318 85 VGSGGAETFYTHAKWSKPRVLSKLKGLVVNAVAWNRQQITEASTKEIILGTDTGQLHEM 143 (936)
Q Consensus 85 ~~~~~g~~~Y~~~~~~k~k~L~klkg~~I~sVaw~~~~~~~~st~~iLiGt~~G~i~e~ 143 (936)
. -|..--+.....+.+.|+++ |-+|..+.|.++. ++-..+++ |.+|...
T Consensus 271 ~---E~VLv~Wq~~T~~kqfLPRL-gs~I~~i~vS~ds----~~~sl~~~--DNqI~li 319 (792)
T KOG1963|consen 271 R---EGVLVLWQLETGKKQFLPRL-GSPILHIVVSPDS----DLYSLVLE--DNQIHLI 319 (792)
T ss_pred c---ceEEEEEeecCCCccccccc-CCeeEEEEEcCCC----CeEEEEec--CceEEEE
Confidence 3 22222333455567789997 7899999999432 33345554 4444443
No 331
>KOG0287 consensus Postreplication repair protein RAD18 [Replication, recombination and repair]
Probab=51.32 E-value=8.8 Score=41.58 Aligned_cols=36 Identities=25% Similarity=0.660 Sum_probs=27.6
Q ss_pred ccccccccchhhhhcccccccccccCCCCCCCCEEEEcCCChhHHHhHHHHHhhc
Q 002318 832 RDEDCGVCRRKILVAGRDYRMARGYASVGPMAPFYVFPCGHAFHAQCLIAHVTQC 886 (936)
Q Consensus 832 ~~~~C~~C~k~L~~~~~~~~~~~~~~~~~~~~~fvvFpCgH~fH~~CL~~~~~~~ 886 (936)
..-+|.+|..-+-- | ++-||||.|.+-|+..++...
T Consensus 22 ~lLRC~IC~eyf~i------------------p-~itpCsHtfCSlCIR~~L~~~ 57 (442)
T KOG0287|consen 22 DLLRCGICFEYFNI------------------P-MITPCSHTFCSLCIRKFLSYK 57 (442)
T ss_pred HHHHHhHHHHHhcC------------------c-eeccccchHHHHHHHHHhccC
Confidence 34589999977655 2 456899999999999887543
No 332
>PRK13979 DNA topoisomerase IV subunit A; Provisional
Probab=51.29 E-value=5.3e+02 Score=33.38 Aligned_cols=68 Identities=12% Similarity=0.066 Sum_probs=37.8
Q ss_pred ceeEEEEe----CCEEEEEecCCeEEEEeC-C--CCCceeeEcCCCCCCccceeEEEeCCCC---CeEEEEeecCCCccE
Q 002318 23 VITCMSAG----NDVIVLGTSKGWLIRHDF-G--AGDSYDIDLSAGRPGEQSIHKVFVDPGG---SHCIATIVGSGGAET 92 (936)
Q Consensus 23 ~i~~l~v~----~n~l~l~~~~g~l~ridl-~--~~~~~~~~l~~~~~~~~~i~~i~lDp~G---~hlli~~~~~~~g~~ 92 (936)
.+..+.+. +..++++|.+|.+-|..+ . ...-...-+... . ++.+-.+.+-..+ .++++.|. +|..
T Consensus 609 Iv~i~~~~ef~~~~~lv~~Tk~G~VKrt~L~ef~~~r~~~~aikL~-e-~DeLV~v~~~~~~~~~~~Iil~Tk---~G~a 683 (957)
T PRK13979 609 IIEAYSIEDFTPQKDFIFITDSGGIKKTSLDKFVTNYTKLMALKLK-K-GEKLIKVKLVDRTREEKFIKIKTK---KGLS 683 (957)
T ss_pred EEEEEEeccCCCCCEEEEEECCCeEEEEehhhccccccceEEEEcC-C-CCEEEEEEEcCCCCCCCEEEEEeC---CCcE
Confidence 44555552 246999999999999987 2 111111112221 2 3455555553332 46777777 6755
Q ss_pred EEE
Q 002318 93 FYT 95 (936)
Q Consensus 93 ~Y~ 95 (936)
.-+
T Consensus 684 irF 686 (957)
T PRK13979 684 FTV 686 (957)
T ss_pred EEE
Confidence 433
No 333
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=51.24 E-value=3.9e+02 Score=29.79 Aligned_cols=107 Identities=24% Similarity=0.198 Sum_probs=74.7
Q ss_pred HHHHHHHhhcCCCCHhHHHHHHHHhhcCCChHHHHHHHHHhhCCCCCCCCcccCChHHHHHHHHhcCcceeeehhhhccc
Q 002318 619 KYLEFCVHRLHNEDPGVHNLLLSLYAKQEDDSALLRFLQCKFGKGRENGPEFFYDPKYALRLCLKEKRMRACVHIYGMMS 698 (936)
Q Consensus 619 ~YLe~li~~~~~~~~~~hn~ll~Ly~~~~~~~~Ll~fL~~~~~~~~~~~~~~~yd~~~aLrlc~~~~~~~~~v~L~~~~g 698 (936)
+..+.+..+.+..++.++-.-+.-|++..+-++|..|-++. ++...| +--.+.|.+++...+......++.
T Consensus 194 k~A~kl~k~Fkv~dkrfw~lki~aLa~~~~w~eL~~fa~sk-------KsPIGy--epFv~~~~~~~~~~eA~~yI~k~~ 264 (319)
T PF04840_consen 194 KQAEKLKKEFKVPDKRFWWLKIKALAENKDWDELEKFAKSK-------KSPIGY--EPFVEACLKYGNKKEASKYIPKIP 264 (319)
T ss_pred HHHHHHHHHcCCcHHHHHHHHHHHHHhcCCHHHHHHHHhCC-------CCCCCh--HHHHHHHHHCCCHHHHHHHHHhCC
Confidence 45666777788889999999999999877677888887643 222456 446677888877666555556666
Q ss_pred cHHHHHHHHHh-cCHHHHHHHhhccCCCHHHHHHHHHHHHHHH
Q 002318 699 MHEEAVALALQ-VDPELAMAEADKVEDDEDLRKKLWLMVAKHV 740 (936)
Q Consensus 699 ~~~eAl~l~l~-~di~lA~~~a~~~~~d~~~~kkLWl~ll~~~ 740 (936)
. ++-+++++. ++...|.+.|-+.. |.+ +...|.+.+
T Consensus 265 ~-~~rv~~y~~~~~~~~A~~~A~~~k-d~~----~L~~i~~~~ 301 (319)
T PF04840_consen 265 D-EERVEMYLKCGDYKEAAQEAFKEK-DID----LLKQILKRC 301 (319)
T ss_pred h-HHHHHHHHHCCCHHHHHHHHHHcC-CHH----HHHHHHHHC
Confidence 6 888888888 88888888885544 444 444444443
No 334
>KOG3799 consensus Rab3 effector RIM1 and related proteins, contain Rab3a binding domain [Intracellular trafficking, secretion, and vesicular transport]
Probab=51.22 E-value=64 Score=30.33 Aligned_cols=18 Identities=28% Similarity=0.792 Sum_probs=13.5
Q ss_pred Eeecccccccccchhhhh
Q 002318 828 AVIDRDEDCGVCRRKILV 845 (936)
Q Consensus 828 ~~i~~~~~C~~C~k~L~~ 845 (936)
+-+.....|.+|.+.=+.
T Consensus 60 aGv~ddatC~IC~KTKFA 77 (169)
T KOG3799|consen 60 AGVGDDATCGICHKTKFA 77 (169)
T ss_pred cccCcCcchhhhhhcccc
Confidence 345668899999987655
No 335
>PF12341 DUF3639: Protein of unknown function (DUF3639) ; InterPro: IPR022100 This domain family is found in eukaryotes, and is approximately 30 amino acids in length. The family is found in association with PF00400 from PFAM. There are two completely conserved residues (E and R) that may be functionally important.
Probab=51.19 E-value=25 Score=23.72 Aligned_cols=22 Identities=32% Similarity=0.566 Sum_probs=19.3
Q ss_pred ceeEEEEeCCEEEEEecCCeEE
Q 002318 23 VITCMSAGNDVIVLGTSKGWLI 44 (936)
Q Consensus 23 ~i~~l~v~~n~l~l~~~~g~l~ 44 (936)
.|.|+++++++++++|+.+.|-
T Consensus 3 ~i~aia~g~~~vavaTS~~~lR 24 (27)
T PF12341_consen 3 EIEAIAAGDSWVAVATSAGYLR 24 (27)
T ss_pred eEEEEEccCCEEEEEeCCCeEE
Confidence 5899999999999999997653
No 336
>smart00777 Mad3_BUB1_I Mad3/BUB1 hoMad3/BUB1 homology region 1. Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of the binding of BUB1 and MAD3 to CDC20p.
Probab=51.12 E-value=74 Score=30.19 Aligned_cols=110 Identities=19% Similarity=0.221 Sum_probs=63.6
Q ss_pred ccHHHHHHHHhCCCCchhhHHhhHHHHHhHChHHHHHHHHccCCCCCCcchhHhhhcCCCCCCCCChHHHHHHHHHHHhh
Q 002318 548 GEAKKALQMLRKPAVPIDLQYKFAPDLIMLDAYETVESWMTTNNLNPRKLIPAMMRYSSEPHAKNETHEVIKYLEFCVHR 627 (936)
Q Consensus 548 ~~~~~AL~~L~~~~d~~~li~k~~~~Ll~~~p~~ti~ll~~~~~ld~~~li~~L~~~~~~~~~~~~~~~~~~YLe~li~~ 627 (936)
+.|++.|.-+-...|+.+.+.+|..|+.++-|..+ ..+.+ ...||.|+..
T Consensus 6 ~~~e~~i~~~~~~dDPL~~w~~yI~W~~~~~p~g~----------~~s~L--------------------~~lLerc~~~ 55 (125)
T smart00777 6 QAFEQELQDLYEGDDPLDLWLRYIKWTEENYPQGG----------KESGL--------------------LTLLERCIRY 55 (125)
T ss_pred HHHHHHHHhcccCCCChHHHHHHHHHHHHhCCCCC----------chhhH--------------------HHHHHHHHHH
Confidence 45666665455667888999999999987777421 01122 2333333332
Q ss_pred cC-----CCCHhHHHHHHHHhhc-CCChHHHHHHHHHhhCCCCCCCCcccCChHHHHHHHHhc-CcceeeehhhhccccH
Q 002318 628 LH-----NEDPGVHNLLLSLYAK-QEDDSALLRFLQCKFGKGRENGPEFFYDPKYALRLCLKE-KRMRACVHIYGMMSMH 700 (936)
Q Consensus 628 ~~-----~~~~~~hn~ll~Ly~~-~~~~~~Ll~fL~~~~~~~~~~~~~~~yd~~~aLrlc~~~-~~~~~~v~L~~~~g~~ 700 (936)
.. ..|+.+-. +...|++ .+++..+..||... + ++.+. -++++-+.++..+|++
T Consensus 56 f~~~~~YknD~RyLk-iWi~ya~~~~dp~~if~~L~~~-~------------------IG~~~AlfYe~~A~~lE~~g~~ 115 (125)
T smart00777 56 FEDDERYKNDPRYLK-IWLKYADNCDEPRELFQFLYSK-G------------------IGTKLALFYEEWAQLLEAAGRY 115 (125)
T ss_pred hhhhhhhcCCHHHHH-HHHHHHHhcCCHHHHHHHHHHC-C------------------cchhhHHHHHHHHHHHHHcCCH
Confidence 21 12332222 2224554 23467788888876 1 12221 2566677788999999
Q ss_pred HHHHHHH
Q 002318 701 EEAVALA 707 (936)
Q Consensus 701 ~eAl~l~ 707 (936)
.+|..+.
T Consensus 116 ~~A~~iy 122 (125)
T smart00777 116 KKADEVY 122 (125)
T ss_pred HHHHHHH
Confidence 9998765
No 337
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=50.40 E-value=4.1e+02 Score=29.77 Aligned_cols=150 Identities=9% Similarity=0.119 Sum_probs=95.5
Q ss_pred CceeEEEEeCC--EEEEEecCCeEEEEeCCCCCceeeEcCCCCCCccceeEEEeCCCCCeEEEEeecCCCccEEEEecCC
Q 002318 22 GVITCMSAGND--VIVLGTSKGWLIRHDFGAGDSYDIDLSAGRPGEQSIHKVFVDPGGSHCIATIVGSGGAETFYTHAKW 99 (936)
Q Consensus 22 ~~i~~l~v~~n--~l~l~~~~g~l~ridl~~~~~~~~~l~~~~~~~~~i~~i~lDp~G~hlli~~~~~~~g~~~Y~~~~~ 99 (936)
+=|.|++|... ++|-|..++++-+||+.-... ...++ +-.+.++.+-+.+.--+++.|.. ++.+-.+....
T Consensus 152 gWVr~vavdP~n~wf~tgs~DrtikIwDlatg~L-kltlt---Ghi~~vr~vavS~rHpYlFs~ge---dk~VKCwDLe~ 224 (460)
T KOG0285|consen 152 GWVRSVAVDPGNEWFATGSADRTIKIWDLATGQL-KLTLT---GHIETVRGVAVSKRHPYLFSAGE---DKQVKCWDLEY 224 (460)
T ss_pred ceEEEEeeCCCceeEEecCCCceeEEEEcccCeE-EEeec---chhheeeeeeecccCceEEEecC---CCeeEEEechh
Confidence 45889998654 666666788999999922221 23333 11467899999988889999998 88887777666
Q ss_pred CCceeccCCCCc--eEEEEEecCCCCCCCCcceEEEEcCCCcEEEEEEecCCcccceeeEEeeeCCCCCceeeEEEEeec
Q 002318 100 SKPRVLSKLKGL--VVNAVAWNRQQITEASTKEIILGTDTGQLHEMAVDEKDKREKYIKLLFELNELPEAFMGLQMETAS 177 (936)
Q Consensus 100 ~k~k~L~klkg~--~I~sVaw~~~~~~~~st~~iLiGt~~G~i~e~~i~~~~~~~~~~k~v~~l~~~~~~I~gi~~~~~~ 177 (936)
+| .+....|+ .|-|++..|. -..++.|..+..+---.+.. --+|+.+.+-..||..+......
T Consensus 225 nk--vIR~YhGHlS~V~~L~lhPT------ldvl~t~grDst~RvWDiRt-------r~~V~~l~GH~~~V~~V~~~~~d 289 (460)
T KOG0285|consen 225 NK--VIRHYHGHLSGVYCLDLHPT------LDVLVTGGRDSTIRVWDIRT-------RASVHVLSGHTNPVASVMCQPTD 289 (460)
T ss_pred hh--hHHHhccccceeEEEecccc------ceeEEecCCcceEEEeeecc-------cceEEEecCCCCcceeEEeecCC
Confidence 54 34444553 5777777732 23666677776544333322 23566676544679998887432
Q ss_pred cCCCceEEEEEECCCeEEEEe
Q 002318 178 LSNGTRYYVMAVTPTRLYSFT 198 (936)
Q Consensus 178 ~~~~~~~~i~ast~~rly~f~ 198 (936)
..+|-.|.+..+--|+
T Consensus 290 -----pqvit~S~D~tvrlWD 305 (460)
T KOG0285|consen 290 -----PQVITGSHDSTVRLWD 305 (460)
T ss_pred -----CceEEecCCceEEEee
Confidence 3566666655555454
No 338
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=49.90 E-value=18 Score=34.37 Aligned_cols=111 Identities=14% Similarity=0.198 Sum_probs=64.0
Q ss_pred ccHHHHHHHHhCCCCchhhHHhhHHHHHhHChHHHHHHHHccCCCCCCcchhHhhhcCCCCCCCCChHHHHHHHHHHHhh
Q 002318 548 GEAKKALQMLRKPAVPIDLQYKFAPDLIMLDAYETVESWMTTNNLNPRKLIPAMMRYSSEPHAKNETHEVIKYLEFCVHR 627 (936)
Q Consensus 548 ~~~~~AL~~L~~~~d~~~li~k~~~~Ll~~~p~~ti~ll~~~~~ld~~~li~~L~~~~~~~~~~~~~~~~~~YLe~li~~ 627 (936)
..|++.|.......|+.+.+.+|..|+.++.|.. +. .......|+.|+..
T Consensus 6 ~~~e~~i~~~~~~dDPL~~w~~yI~w~~~~~p~~-----------~~-------------------~~~L~~lLer~~~~ 55 (126)
T PF08311_consen 6 QEFEEQIRSYEEGDDPLDPWLRYIKWIEENYPSG-----------GK-------------------QSGLLELLERCIRK 55 (126)
T ss_dssp HHHHHHHHCCGGSS-CHHHHHHHHHHHHHHCTTC-----------CC-------------------CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHccCCCCChHHHHHHHHHHHHHCCCC-----------Cc-------------------hhHHHHHHHHHHHH
Confidence 4567777766666788999999999999887750 00 11233344444433
Q ss_pred cCC-----CCHhHHHHHHHHhhcC-CChHHHHHHHHHhhCCCCCCCCcccCChHHHHHHHHhc-CcceeeehhhhccccH
Q 002318 628 LHN-----EDPGVHNLLLSLYAKQ-EDDSALLRFLQCKFGKGRENGPEFFYDPKYALRLCLKE-KRMRACVHIYGMMSMH 700 (936)
Q Consensus 628 ~~~-----~~~~~hn~ll~Ly~~~-~~~~~Ll~fL~~~~~~~~~~~~~~~yd~~~aLrlc~~~-~~~~~~v~L~~~~g~~ 700 (936)
... .|+.+-. +...|++. .++..+..||... + ++.+. .++.+-+.++...|++
T Consensus 56 f~~~~~Y~nD~Rylk-iWi~ya~~~~~~~~if~~l~~~-~------------------IG~~~A~fY~~wA~~le~~~~~ 115 (126)
T PF08311_consen 56 FKDDERYKNDERYLK-IWIKYADLSSDPREIFKFLYSK-G------------------IGTKLALFYEEWAEFLEKRGNF 115 (126)
T ss_dssp HTTSGGGTT-HHHHH-HHHHHHTTBSHHHHHHHHHHHH-T------------------TSTTBHHHHHHHHHHHHHTT-H
T ss_pred HhhhHhhcCCHHHHH-HHHHHHHHccCHHHHHHHHHHc-C------------------ccHHHHHHHHHHHHHHHHcCCH
Confidence 221 2222222 22345553 2467788888876 1 12221 2556667778899999
Q ss_pred HHHHHHHH
Q 002318 701 EEAVALAL 708 (936)
Q Consensus 701 ~eAl~l~l 708 (936)
++|..+.-
T Consensus 116 ~~A~~I~~ 123 (126)
T PF08311_consen 116 KKADEIYQ 123 (126)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99988754
No 339
>PRK05560 DNA gyrase subunit A; Validated
Probab=49.86 E-value=5e+02 Score=32.98 Aligned_cols=159 Identities=14% Similarity=0.218 Sum_probs=90.2
Q ss_pred EEEeCCEEEEEecCCeEEEEeC-CCCC--ceeeEcC--CCCCCccceeEEEeCCCCCeEEEEeecCCCccEEEEecCC--
Q 002318 27 MSAGNDVIVLGTSKGWLIRHDF-GAGD--SYDIDLS--AGRPGEQSIHKVFVDPGGSHCIATIVGSGGAETFYTHAKW-- 99 (936)
Q Consensus 27 l~v~~n~l~l~~~~g~l~ridl-~~~~--~~~~~l~--~~~~~~~~i~~i~lDp~G~hlli~~~~~~~g~~~Y~~~~~-- 99 (936)
+....+++++.++.|.+-|+++ .-.. .....+. ... .+..+..++.=.++.++++-|+ +|.+|++....
T Consensus 494 lI~~E~v~vllS~~GyIKri~~~~~~~~~~~~~g~~~~klK-e~D~l~~~~~~~t~d~LllfTs---~Grv~~l~v~~iP 569 (805)
T PRK05560 494 LIPEEDVVVTLTHGGYIKRTPLDEYRAQRRGGKGVSGAKTK-EDDFVEHLFVASTHDTLLFFTN---RGRVYRLKVYEIP 569 (805)
T ss_pred ccCCCCEEEEEeCCCEEEEcchhhhhhhcccCCCccccccC-CCCeeEEEEEecCCCeEEEEec---CCeEEEEEhhhCc
Confidence 3446789999999999999987 2111 1101000 001 1357777888788888999888 89999885421
Q ss_pred -----CCceec---cCCC-C-ceEEEEEecCCCCCCCCcceEEEEcCCCcEEEEEEecCCcccceeeEEeeeCCCCCcee
Q 002318 100 -----SKPRVL---SKLK-G-LVVNAVAWNRQQITEASTKEIILGTDTGQLHEMAVDEKDKREKYIKLLFELNELPEAFM 169 (936)
Q Consensus 100 -----~k~k~L---~klk-g-~~I~sVaw~~~~~~~~st~~iLiGt~~G~i~e~~i~~~~~~~~~~k~v~~l~~~~~~I~ 169 (936)
.+-.++ -++. | ..|.++..++. .....+++.|++|.+--..+..-....+.-+....+.+. ..+.
T Consensus 570 ~~~~~~~G~~i~~ll~L~~~E~Iv~~i~~~~~----~~e~~lvlvTk~GyiKRi~l~~~~~~~r~G~~~ikLke~-D~lv 644 (805)
T PRK05560 570 EASRTARGRPIVNLLPLEPGEKITAILPVREF----DDDKYLFFATKNGTVKKTSLSEFSNIRSNGIIAINLDEG-DELI 644 (805)
T ss_pred CCCcCCCCeEHHHhcCCCCCceEEEEEeccCC----CCCCEEEEEeCCCEEEEEEhHHhhhcccCCceeeccCCC-CEEE
Confidence 122222 1221 2 34555666521 123468889999988777664321101111233445432 2344
Q ss_pred eEEEEeeccCCCceEEEEEECCCeEEEEec
Q 002318 170 GLQMETASLSNGTRYYVMAVTPTRLYSFTG 199 (936)
Q Consensus 170 gi~~~~~~~~~~~~~~i~ast~~rly~f~~ 199 (936)
++... ++...++++|...++|.|..
T Consensus 645 ~v~~~-----~~~d~lll~T~~Gr~~r~~~ 669 (805)
T PRK05560 645 GVRLT-----DGDDDILLATKNGKAIRFPE 669 (805)
T ss_pred EEEEe-----CCCCEEEEEECCCcEEEEEh
Confidence 44433 22356777788899998854
No 340
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=49.80 E-value=2.6e+02 Score=31.16 Aligned_cols=110 Identities=8% Similarity=-0.017 Sum_probs=75.3
Q ss_pred eeEEEEeCC--EEEEEecCCeEEEEeC-CCCCceeeEcCCCCCCccceeEEEeCCCCCeEEEEeecCCCccEEEEecCCC
Q 002318 24 ITCMSAGND--VIVLGTSKGWLIRHDF-GAGDSYDIDLSAGRPGEQSIHKVFVDPGGSHCIATIVGSGGAETFYTHAKWS 100 (936)
Q Consensus 24 i~~l~v~~n--~l~l~~~~g~l~ridl-~~~~~~~~~l~~~~~~~~~i~~i~lDp~G~hlli~~~~~~~g~~~Y~~~~~~ 100 (936)
+..++|++. .|+-+..++.|-.||| ...-+.++.=+. +.|..+-+.|+-.-++.+.. |...-.+.-...
T Consensus 196 vr~vavS~rHpYlFs~gedk~VKCwDLe~nkvIR~YhGHl-----S~V~~L~lhPTldvl~t~gr---Dst~RvWDiRtr 267 (460)
T KOG0285|consen 196 VRGVAVSKRHPYLFSAGEDKQVKCWDLEYNKVIRHYHGHL-----SGVYCLDLHPTLDVLVTGGR---DSTIRVWDIRTR 267 (460)
T ss_pred eeeeeecccCceEEEecCCCeeEEEechhhhhHHHhcccc-----ceeEEEeccccceeEEecCC---cceEEEeeeccc
Confidence 557888888 5677788999999999 555555665553 46889999999987777665 444445554333
Q ss_pred -CceeccCCCCceEEEEEecCCCCCCCCcceEEEEcCCCcEEEEEEecC
Q 002318 101 -KPRVLSKLKGLVVNAVAWNRQQITEASTKEIILGTDTGQLHEMAVDEK 148 (936)
Q Consensus 101 -k~k~L~klkg~~I~sVaw~~~~~~~~st~~iLiGt~~G~i~e~~i~~~ 148 (936)
++..|+- ....|.+|..++. ...|+-|+-++.|-.-.+-.+
T Consensus 268 ~~V~~l~G-H~~~V~~V~~~~~------dpqvit~S~D~tvrlWDl~ag 309 (460)
T KOG0285|consen 268 ASVHVLSG-HTNPVASVMCQPT------DPQVITGSHDSTVRLWDLRAG 309 (460)
T ss_pred ceEEEecC-CCCcceeEEeecC------CCceEEecCCceEEEeeeccC
Confidence 3334432 2248999999832 247899999998877655443
No 341
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=49.60 E-value=47 Score=37.32 Aligned_cols=114 Identities=11% Similarity=0.105 Sum_probs=73.8
Q ss_pred cceeEEEeCCCCCeEEEEeecCCCccEEEEecCCCCceeccCCCCceEEEEEecCCCCCCCCcceEEEEcCCCcEEEEEE
Q 002318 66 QSIHKVFVDPGGSHCIATIVGSGGAETFYTHAKWSKPRVLSKLKGLVVNAVAWNRQQITEASTKEIILGTDTGQLHEMAV 145 (936)
Q Consensus 66 ~~i~~i~lDp~G~hlli~~~~~~~g~~~Y~~~~~~k~k~L~klkg~~I~sVaw~~~~~~~~st~~iLiGt~~G~i~e~~i 145 (936)
..|..+-=-|.|+-|++.+. +|+.--++..+-.+..+..-.+..|+++.|.+ .+..+|...+| .+...+
T Consensus 97 c~V~~v~WtPeGRRLltgs~---SGEFtLWNg~~fnFEtilQaHDs~Vr~m~ws~-------~g~wmiSgD~g-G~iKyW 165 (464)
T KOG0284|consen 97 CPVNVVRWTPEGRRLLTGSQ---SGEFTLWNGTSFNFETILQAHDSPVRTMKWSH-------NGTWMISGDKG-GMIKYW 165 (464)
T ss_pred cceeeEEEcCCCceeEeecc---cccEEEecCceeeHHHHhhhhcccceeEEEcc-------CCCEEEEcCCC-ceEEec
Confidence 56777777899999999999 89998888877666666666788999999983 23566655554 222333
Q ss_pred ecCCcccceeeEEeeeCCCCCceeeEEEEeeccCCCceEEEEEECCCeEEEEecC
Q 002318 146 DEKDKREKYIKLLFELNELPEAFMGLQMETASLSNGTRYYVMAVTPTRLYSFTGF 200 (936)
Q Consensus 146 ~~~~~~~~~~k~v~~l~~~~~~I~gi~~~~~~~~~~~~~~i~ast~~rly~f~~~ 200 (936)
+.+ .+.+|.++.-. .+.|+++.+.. ++ .-++-+|...++--|...
T Consensus 166 qpn---mnnVk~~~ahh--~eaIRdlafSp----nD-skF~t~SdDg~ikiWdf~ 210 (464)
T KOG0284|consen 166 QPN---MNNVKIIQAHH--AEAIRDLAFSP----ND-SKFLTCSDDGTIKIWDFR 210 (464)
T ss_pred ccc---hhhhHHhhHhh--hhhhheeccCC----CC-ceeEEecCCCeEEEEecc
Confidence 332 11223222112 25699999873 22 345555667777767654
No 342
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=49.33 E-value=96 Score=34.03 Aligned_cols=83 Identities=13% Similarity=0.097 Sum_probs=56.1
Q ss_pred EEeCCEEEEEecCCeEEEEeC-CCCCceeeEcCCCCCCccceeEEEeCCCCCeEEEEeecCCCccE--EEEecCCCCcee
Q 002318 28 SAGNDVIVLGTSKGWLIRHDF-GAGDSYDIDLSAGRPGEQSIHKVFVDPGGSHCIATIVGSGGAET--FYTHAKWSKPRV 104 (936)
Q Consensus 28 ~v~~n~l~l~~~~g~l~ridl-~~~~~~~~~l~~~~~~~~~i~~i~lDp~G~hlli~~~~~~~g~~--~Y~~~~~~k~k~ 104 (936)
|-+--+||.+...|.|..++| +|+=..+|+-- ...+..+.-.|.|+|++..+. .+. -.+.....+.-.
T Consensus 58 ads~~ilC~~yk~~~vqvwsl~Qpew~ckIdeg-----~agls~~~WSPdgrhiL~tse----F~lriTVWSL~t~~~~~ 128 (447)
T KOG4497|consen 58 ADSCHILCVAYKDPKVQVWSLVQPEWYCKIDEG-----QAGLSSISWSPDGRHILLTSE----FDLRITVWSLNTQKGYL 128 (447)
T ss_pred ccceeeeeeeeccceEEEEEeecceeEEEeccC-----CCcceeeeECCCcceEeeeec----ceeEEEEEEeccceeEE
Confidence 344558899999999999999 99876666542 356777888999999999886 332 233333444434
Q ss_pred ccCCCCceEEEEEecC
Q 002318 105 LSKLKGLVVNAVAWNR 120 (936)
Q Consensus 105 L~klkg~~I~sVaw~~ 120 (936)
|+--|. .++-++|++
T Consensus 129 ~~~pK~-~~kg~~f~~ 143 (447)
T KOG4497|consen 129 LPHPKT-NVKGYAFHP 143 (447)
T ss_pred eccccc-CceeEEECC
Confidence 433332 347788884
No 343
>COG5110 RPN1 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=49.21 E-value=34 Score=39.81 Aligned_cols=95 Identities=19% Similarity=0.242 Sum_probs=58.2
Q ss_pred HHhhcCCChHHHHHHHHHhhCCCCCCCCcccCChHHHHHHHHhc-------------CcceeeehhhhccccHHHHHHHH
Q 002318 641 SLYAKQEDDSALLRFLQCKFGKGRENGPEFFYDPKYALRLCLKE-------------KRMRACVHIYGMMSMHEEAVALA 707 (936)
Q Consensus 641 ~Ly~~~~~~~~Ll~fL~~~~~~~~~~~~~~~yd~~~aLrlc~~~-------------~~~~~~v~L~~~~g~~~eAl~l~ 707 (936)
-.+.+++.+...++||.+-.+ + ++..+..|.+.+-|+|.-- .+.+-.--||-+||++.+||..+
T Consensus 188 pfflkHNaE~dAiDlL~Evg~--I-ekv~~fVd~~n~~RvclYl~~cv~llp~pedVa~l~ta~~IYlk~~~lt~av~~a 264 (881)
T COG5110 188 PFFLKHNAEFDAIDLLVEVGG--I-EKVLDFVDTHNYNRVCLYLEDCVPLLPPPEDVALLETALKIYLKMGDLTRAVVGA 264 (881)
T ss_pred HHHHhcccchHHHHHHHHhcc--h-hhhhhhhcccchhHHHHHHHHhhccCCChHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 344444444555666655411 1 1111344555556666321 12233446899999999999999
Q ss_pred Hh-cCHHHHHHHhhccCCCHHHHHHHHHHHHHH
Q 002318 708 LQ-VDPELAMAEADKVEDDEDLRKKLWLMVAKH 739 (936)
Q Consensus 708 l~-~di~lA~~~a~~~~~d~~~~kkLWl~ll~~ 739 (936)
+. ++.++++++|+.. .|+..+|++--.+++.
T Consensus 265 iRl~~~~~i~e~~~a~-~Dp~~kKQ~~YiLArq 296 (881)
T COG5110 265 IRLQKSKEIIEYVRAI-EDPDYKKQCLYILARQ 296 (881)
T ss_pred HhcccHHHHHHHHHhc-cChHHHHHHHHHHHhc
Confidence 99 8899999999544 4787777765555543
No 344
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=48.71 E-value=4.4e+02 Score=29.64 Aligned_cols=156 Identities=9% Similarity=0.106 Sum_probs=82.6
Q ss_pred CceeEEEEeCCEEEEEecCCeEEEEeC-CCCCceeeEcCCCCCCccceeEEEeCCCCCeEEEEeecCCCccEEEEecCCC
Q 002318 22 GVITCMSAGNDVIVLGTSKGWLIRHDF-GAGDSYDIDLSAGRPGEQSIHKVFVDPGGSHCIATIVGSGGAETFYTHAKWS 100 (936)
Q Consensus 22 ~~i~~l~v~~n~l~l~~~~g~l~ridl-~~~~~~~~~l~~~~~~~~~i~~i~lDp~G~hlli~~~~~~~g~~~Y~~~~~~ 100 (936)
..|.++.-.-+-|++-+.. .||.+|+ +-.-...|+.-.++. -.+--+...+.+.|+..=.. -..|+++-++...-
T Consensus 88 t~IL~VrmNr~RLvV~Lee-~IyIydI~~MklLhTI~t~~~n~--~gl~AlS~n~~n~ylAyp~s-~t~GdV~l~d~~nl 163 (391)
T KOG2110|consen 88 TSILAVRMNRKRLVVCLEE-SIYIYDIKDMKLLHTIETTPPNP--KGLCALSPNNANCYLAYPGS-TTSGDVVLFDTINL 163 (391)
T ss_pred CceEEEEEccceEEEEEcc-cEEEEecccceeehhhhccCCCc--cceEeeccCCCCceEEecCC-CCCceEEEEEcccc
Confidence 4577777777777777776 4899999 544444444221111 12333444555555554211 12688876665444
Q ss_pred CceeccCCCCceEEEEEecCCCCCCCCcceEEEEcCCCcEEEEEEecCCcccceeeEEeeeCC--CCCceeeEEEEeecc
Q 002318 101 KPRVLSKLKGLVVNAVAWNRQQITEASTKEIILGTDTGQLHEMAVDEKDKREKYIKLLFELNE--LPEAFMGLQMETASL 178 (936)
Q Consensus 101 k~k~L~klkg~~I~sVaw~~~~~~~~st~~iLiGt~~G~i~e~~i~~~~~~~~~~k~v~~l~~--~~~~I~gi~~~~~~~ 178 (936)
++...-.-..-.+-|+||+++ ..-+-.++.+|.|....--+. + ..+|++-- .+..|.+|.|..
T Consensus 164 ~~v~~I~aH~~~lAalafs~~------G~llATASeKGTVIRVf~v~~-G-----~kl~eFRRG~~~~~IySL~Fs~--- 228 (391)
T KOG2110|consen 164 QPVNTINAHKGPLAALAFSPD------GTLLATASEKGTVIRVFSVPE-G-----QKLYEFRRGTYPVSIYSLSFSP--- 228 (391)
T ss_pred eeeeEEEecCCceeEEEECCC------CCEEEEeccCceEEEEEEcCC-c-----cEeeeeeCCceeeEEEEEEECC---
Confidence 332222223348999999942 114445567898876543322 1 12344431 134466777752
Q ss_pred CCCceEEEEEECCCeEEEEe
Q 002318 179 SNGTRYYVMAVTPTRLYSFT 198 (936)
Q Consensus 179 ~~~~~~~i~ast~~rly~f~ 198 (936)
+.+++..++....+.-|.
T Consensus 229 --ds~~L~~sS~TeTVHiFK 246 (391)
T KOG2110|consen 229 --DSQFLAASSNTETVHIFK 246 (391)
T ss_pred --CCCeEEEecCCCeEEEEE
Confidence 335555555455566553
No 345
>PF12854 PPR_1: PPR repeat
Probab=48.18 E-value=25 Score=24.81 Aligned_cols=24 Identities=13% Similarity=0.393 Sum_probs=20.6
Q ss_pred HHHHHHHHHhcccHHHHHHHHhCC
Q 002318 537 HEIVVHHYIQQGEAKKALQMLRKP 560 (936)
Q Consensus 537 y~~ll~~yi~~~~~~~AL~~L~~~ 560 (936)
|..++.-|...|+.++|++++.+.
T Consensus 10 y~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 10 YNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHhC
Confidence 567888999999999999998754
No 346
>TIGR01063 gyrA DNA gyrase, A subunit. This model describes the common type II DNA topoisomerase (DNA gyrase). Two apparently independently arising families, one in the Proteobacteria and one in Gram-positive lineages, are both designated toposisomerase IV.
Probab=47.40 E-value=3.2e+02 Score=34.71 Aligned_cols=159 Identities=9% Similarity=0.144 Sum_probs=87.7
Q ss_pred EEEeCCEEEEEecCCeEEEEeC-CCCC--ce--eeEcCCCCCCccceeEEEeCCCCCeEEEEeecCCCccEEEEecCC--
Q 002318 27 MSAGNDVIVLGTSKGWLIRHDF-GAGD--SY--DIDLSAGRPGEQSIHKVFVDPGGSHCIATIVGSGGAETFYTHAKW-- 99 (936)
Q Consensus 27 l~v~~n~l~l~~~~g~l~ridl-~~~~--~~--~~~l~~~~~~~~~i~~i~lDp~G~hlli~~~~~~~g~~~Y~~~~~-- 99 (936)
+....+++++.++.|.+-|+++ .-.. .. ........ .++.+..++.=.++.++++.|+ .|.+|++....
T Consensus 492 li~~e~~~vllS~~GyIKri~~~~~~~~~~~~~g~s~~klK-e~D~l~~~~~~~t~d~LllfTs---~Grv~~l~~~~IP 567 (800)
T TIGR01063 492 LIARENVVVTLSHNGYVKRVPVSAYRLQKRGGKGVSGADMK-DDDFIEQLLVASTHDYLLFFTN---RGKVYWLKVYQIP 567 (800)
T ss_pred ccCcceEEEEEcCCCEEEecchhhhhhhcccCcCccccccC-CCCeeEEEEEecCCCeEEEEeC---CCcEEEEEhhhCc
Confidence 3445678899999999999987 2111 11 01111111 2357777888788888999998 89999886422
Q ss_pred -----CCceec---cCC-CC-ceEEEEEecCCCCCCCCcceEEEEcCCCcEEEEEEecCCcccceeeEEeeeCCCCCcee
Q 002318 100 -----SKPRVL---SKL-KG-LVVNAVAWNRQQITEASTKEIILGTDTGQLHEMAVDEKDKREKYIKLLFELNELPEAFM 169 (936)
Q Consensus 100 -----~k~k~L---~kl-kg-~~I~sVaw~~~~~~~~st~~iLiGt~~G~i~e~~i~~~~~~~~~~k~v~~l~~~~~~I~ 169 (936)
.+-.++ -++ .| ..|.++..++. . ....+++.|++|.+--+.+..-....+.-+...++.+. ..+.
T Consensus 568 ~~~r~~~G~~i~~ll~L~~~E~Iv~~i~~~~~--~--~~~~lvliT~~GyiKRi~l~~~~~~~r~G~~aiklke~-D~lv 642 (800)
T TIGR01063 568 EASRTAKGKPIVNLLPLQPDERITAILSVKEF--D--DGLYLFFATKNGVVKKTSLTEFSNIRSNGIIAIKLDDG-DELI 642 (800)
T ss_pred CCCcCCCCcCHHHhccCCCCCeEEEEEEeccC--C--CCCEEEEEeCCCEEEEEEhHHhhhhccCCcccccCCCC-CEEE
Confidence 111122 122 12 24445554321 1 12368889999988777664321000111222344331 2344
Q ss_pred eEEEEeeccCCCceEEEEEECCCeEEEEec
Q 002318 170 GLQMETASLSNGTRYYVMAVTPTRLYSFTG 199 (936)
Q Consensus 170 gi~~~~~~~~~~~~~~i~ast~~rly~f~~ 199 (936)
++... +....++++|+..++|.|..
T Consensus 643 ~v~~~-----~~~d~lll~Ts~Gr~~r~~v 667 (800)
T TIGR01063 643 SVRLT-----SGDDEVMLGSKNGKAVRFPE 667 (800)
T ss_pred EEEEe-----CCCCEEEEEECCCcEEEEEh
Confidence 44333 22245777788899998854
No 347
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=47.22 E-value=3.3e+02 Score=31.27 Aligned_cols=26 Identities=15% Similarity=0.070 Sum_probs=15.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhc
Q 002318 393 VYLVQAEAAFATKDFHRAASFYAKIN 418 (936)
Q Consensus 393 I~~~~~~~L~~~g~y~~Aa~~y~~~~ 418 (936)
+...||..+...|+.++|.+...+..
T Consensus 265 ~~~~~A~~l~~~g~~~~A~~~L~~~l 290 (398)
T PRK10747 265 LQVAMAEHLIECDDHDTAQQIILDGL 290 (398)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 44455666666666666666655544
No 348
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=46.91 E-value=2.6e+02 Score=28.02 Aligned_cols=65 Identities=12% Similarity=0.061 Sum_probs=42.8
Q ss_pred HHHHHHHhcccccCCHHHHHHHHHHcCCh----hHHHHHHHhhh-hHHHHHHHHHhcccHHHHHHHHhCC
Q 002318 496 REFRAFLSDCKDVLDEATTMKLLESYGRV----EELVFFASLKE-QHEIVVHHYIQQGEAKKALQMLRKP 560 (936)
Q Consensus 496 ~~l~~fl~~~~~~ld~~tv~~ll~~~g~~----e~~l~~a~~~~-dy~~ll~~yi~~~~~~~AL~~L~~~ 560 (936)
..+..|+....-.=.+..+..++...+.. .-++..-+..+ .|+.+++.++..|++-+|+++..+.
T Consensus 46 ~~L~qllq~~Vi~DSk~lA~~LLs~~~~~~~~~Ql~lDMLkRL~~~~~~iievLL~~g~vl~ALr~ar~~ 115 (167)
T PF07035_consen 46 SQLHQLLQYHVIPDSKPLACQLLSLGNQYPPAYQLGLDMLKRLGTAYEEIIEVLLSKGQVLEALRYARQY 115 (167)
T ss_pred HHHHHHHhhcccCCcHHHHHHHHHhHccChHHHHHHHHHHHHhhhhHHHHHHHHHhCCCHHHHHHHHHHc
Confidence 45666765432211344555555544443 33455555557 9999999999999999999999874
No 349
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=46.81 E-value=42 Score=25.85 Aligned_cols=31 Identities=23% Similarity=0.391 Sum_probs=24.4
Q ss_pred ceEEEEEecCCCCCCCCcceEEEEcCCCcEEEEEEec
Q 002318 111 LVVNAVAWNRQQITEASTKEIILGTDTGQLHEMAVDE 147 (936)
Q Consensus 111 ~~I~sVaw~~~~~~~~st~~iLiGt~~G~i~e~~i~~ 147 (936)
..|++++|+|. ..=|-+||.+|.|+-+.++.
T Consensus 12 ~~v~~~~w~P~------mdLiA~~t~~g~v~v~Rl~~ 42 (47)
T PF12894_consen 12 SRVSCMSWCPT------MDLIALGTEDGEVLVYRLNW 42 (47)
T ss_pred CcEEEEEECCC------CCEEEEEECCCeEEEEECCC
Confidence 47999999953 22677899999999988843
No 350
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=46.23 E-value=5.1e+02 Score=29.74 Aligned_cols=103 Identities=15% Similarity=0.119 Sum_probs=53.6
Q ss_pred HHHHHHhCCC----CchhhHHhhHHHHHh-HChHHHHHHHHccCCCCCCcc---hhHhhhcCCCCCCCCChHHHHHHHHH
Q 002318 552 KALQMLRKPA----VPIDLQYKFAPDLIM-LDAYETVESWMTTNNLNPRKL---IPAMMRYSSEPHAKNETHEVIKYLEF 623 (936)
Q Consensus 552 ~AL~~L~~~~----d~~~li~k~~~~Ll~-~~p~~ti~ll~~~~~ld~~~l---i~~L~~~~~~~~~~~~~~~~~~YLe~ 623 (936)
...+.+...+ +...+.+-++..++. ..++++.+.+-+.-+..|+.- ++.+..+.... +.+...+...++.
T Consensus 247 ~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~--~~~~~~~~~~~e~ 324 (409)
T TIGR00540 247 GLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLPLCLPIPRLK--PEDNEKLEKLIEK 324 (409)
T ss_pred HHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchhHHHHHhhhcC--CCChHHHHHHHHH
Confidence 3344444444 235677777777765 455566666543322222111 12222222110 1233456666666
Q ss_pred HHhhcCCCCH--hHHHHHHHHhhcCCChHHHHHHHH
Q 002318 624 CVHRLHNEDP--GVHNLLLSLYAKQEDDSALLRFLQ 657 (936)
Q Consensus 624 li~~~~~~~~--~~hn~ll~Ly~~~~~~~~Ll~fL~ 657 (936)
.....+ .++ .+...|-.+|...++-++-.++++
T Consensus 325 ~lk~~p-~~~~~~ll~sLg~l~~~~~~~~~A~~~le 359 (409)
T TIGR00540 325 QAKNVD-DKPKCCINRALGQLLMKHGEFIEAADAFK 359 (409)
T ss_pred HHHhCC-CChhHHHHHHHHHHHHHcccHHHHHHHHH
Confidence 654433 456 677777777777665667777777
No 351
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=46.10 E-value=3.2e+02 Score=29.95 Aligned_cols=103 Identities=10% Similarity=0.059 Sum_probs=65.0
Q ss_pred ccceeEEEeCCCCCeEEEEeecCCCccEEEEec--CCCCceeccC--CCCceEEEEEecCCCCCCCCcceEEEE-cCCC-
Q 002318 65 EQSIHKVFVDPGGSHCIATIVGSGGAETFYTHA--KWSKPRVLSK--LKGLVVNAVAWNRQQITEASTKEIILG-TDTG- 138 (936)
Q Consensus 65 ~~~i~~i~lDp~G~hlli~~~~~~~g~~~Y~~~--~~~k~k~L~k--lkg~~I~sVaw~~~~~~~~st~~iLiG-t~~G- 138 (936)
.+-|+.+-.|+.|+++..|+. |+.+-.+.. .+.+-..-++ -.+-.|-.|.|-+|.+ |.+|-- +-++
T Consensus 13 ~DlihdVs~D~~GRRmAtCSs---Dq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEf-----GqvvA~cS~Drt 84 (361)
T KOG2445|consen 13 KDLIHDVSFDFYGRRMATCSS---DQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEF-----GQVVATCSYDRT 84 (361)
T ss_pred cceeeeeeecccCceeeeccC---CCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccc-----cceEEEEecCCc
Confidence 467999999999999999988 776654442 1212222222 2355888999997754 355554 3343
Q ss_pred -cEEEEEEecCCcccceeeEEeeeCCCCCceeeEEEEe
Q 002318 139 -QLHEMAVDEKDKREKYIKLLFELNELPEAFMGLQMET 175 (936)
Q Consensus 139 -~i~e~~i~~~~~~~~~~k~v~~l~~~~~~I~gi~~~~ 175 (936)
.|+|=.-+.-+...+.+.....+.+..+.|+.|+|..
T Consensus 85 v~iWEE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP 122 (361)
T KOG2445|consen 85 VSIWEEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAP 122 (361)
T ss_pred eeeeeecccccccccceeEEEEEeecCCcceeEEEecc
Confidence 3454321111223456777777877668899999974
No 352
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=45.96 E-value=5.6e+02 Score=31.21 Aligned_cols=157 Identities=10% Similarity=0.087 Sum_probs=90.1
Q ss_pred ceeEEEEeC--CEEEEEecCC-----eEEEEeC-CCCCceeeEcCCCCCCccceeEEEeCCCCCeEEEEeecCCCccEEE
Q 002318 23 VITCMSAGN--DVIVLGTSKG-----WLIRHDF-GAGDSYDIDLSAGRPGEQSIHKVFVDPGGSHCIATIVGSGGAETFY 94 (936)
Q Consensus 23 ~i~~l~v~~--n~l~l~~~~g-----~l~ridl-~~~~~~~~~l~~~~~~~~~i~~i~lDp~G~hlli~~~~~~~g~~~Y 94 (936)
-|.|+++++ |+++=+..+. .|..++- +=.++.+++-| .-.|++|-..|.|++|+..+. |-..--
T Consensus 527 Ev~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W~~~~~L~~H-----sLTVT~l~FSpdg~~LLsvsR---DRt~sl 598 (764)
T KOG1063|consen 527 EVYALAISPTGNLIASACKSSLKEHAVIRLWNTANWLQVQELEGH-----SLTVTRLAFSPDGRYLLSVSR---DRTVSL 598 (764)
T ss_pred eEEEEEecCCCCEEeehhhhCCccceEEEEEeccchhhhheeccc-----ceEEEEEEECCCCcEEEEeec---CceEEe
Confidence 389999994 4554444332 2555555 44445556555 468999999999999999887 554432
Q ss_pred EecCCC-C----ceeccCCCCceEEEEEecCCCCCCCCcceEEEEcCCCcEEEEEEecCCcccceeeEEeeeCCCCCcee
Q 002318 95 THAKWS-K----PRVLSKLKGLVVNAVAWNRQQITEASTKEIILGTDTGQLHEMAVDEKDKREKYIKLLFELNELPEAFM 169 (936)
Q Consensus 95 ~~~~~~-k----~k~L~klkg~~I~sVaw~~~~~~~~st~~iLiGt~~G~i~e~~i~~~~~~~~~~k~v~~l~~~~~~I~ 169 (936)
...+.. + ...+ |-.-..|=+..|+|. ..-|..++.|-.+....+... .++|+..+-.++- ..+||
T Consensus 599 ~~~~~~~~~e~~fa~~-k~HtRIIWdcsW~pd------e~~FaTaSRDK~VkVW~~~~~--~d~~i~~~a~~~~-~~aVT 668 (764)
T KOG1063|consen 599 YEVQEDIKDEFRFACL-KAHTRIIWDCSWSPD------EKYFATASRDKKVKVWEEPDL--RDKYISRFACLKF-SLAVT 668 (764)
T ss_pred eeeecccchhhhhccc-cccceEEEEcccCcc------cceeEEecCCceEEEEeccCc--hhhhhhhhchhcc-CCcee
Confidence 222111 1 1111 112245666666643 224888888877666555432 2456655322221 26799
Q ss_pred eEEEEeeccCCCceEEEEEEC-CCeEEEEe
Q 002318 170 GLQMETASLSNGTRYYVMAVT-PTRLYSFT 198 (936)
Q Consensus 170 gi~~~~~~~~~~~~~~i~ast-~~rly~f~ 198 (936)
.|.+..... ++.+.+|-|-. ...|+-|.
T Consensus 669 Av~~~~~~~-~e~~~~vavGle~GeI~l~~ 697 (764)
T KOG1063|consen 669 AVAYLPVDH-NEKGDVVAVGLEKGEIVLWR 697 (764)
T ss_pred eEEeecccc-ccccceEEEEecccEEEEEe
Confidence 999976543 33444444444 66777664
No 353
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=45.93 E-value=4.3e+02 Score=28.81 Aligned_cols=151 Identities=15% Similarity=0.132 Sum_probs=90.0
Q ss_pred ceeEEEEeC--CEEEEEecCCeEEEEeC-CCCCceeeEcCCCCCCccceeEEEeCCCCCeEEEEeecCCCccEEEEecCC
Q 002318 23 VITCMSAGN--DVIVLGTSKGWLIRHDF-GAGDSYDIDLSAGRPGEQSIHKVFVDPGGSHCIATIVGSGGAETFYTHAKW 99 (936)
Q Consensus 23 ~i~~l~v~~--n~l~l~~~~g~l~ridl-~~~~~~~~~l~~~~~~~~~i~~i~lDp~G~hlli~~~~~~~g~~~Y~~~~~ 99 (936)
+|.||.-+. +-++=+..+|+|+.||. ..+.+.-|++| ..=|--.-..|.|..+..--- ++-...|-- +.
T Consensus 57 Ki~~~~ws~Dsr~ivSaSqDGklIvWDs~TtnK~haipl~-----s~WVMtCA~sPSg~~VAcGGL--dN~Csiy~l-s~ 128 (343)
T KOG0286|consen 57 KIYAMDWSTDSRRIVSASQDGKLIVWDSFTTNKVHAIPLP-----SSWVMTCAYSPSGNFVACGGL--DNKCSIYPL-ST 128 (343)
T ss_pred ceeeeEecCCcCeEEeeccCCeEEEEEcccccceeEEecC-----ceeEEEEEECCCCCeEEecCc--CceeEEEec-cc
Confidence 466666554 57788889999999999 88888888887 345555666899985544322 122223322 11
Q ss_pred C----CceeccCCCC--ceEEEEEecCCCCCCCCcceEEEEcCCCcEEEEEEecCCcccceeeEEeeeCCCCCceeeEEE
Q 002318 100 S----KPRVLSKLKG--LVVNAVAWNRQQITEASTKEIILGTDTGQLHEMAVDEKDKREKYIKLLFELNELPEAFMGLQM 173 (936)
Q Consensus 100 ~----k~k~L~klkg--~~I~sVaw~~~~~~~~st~~iLiGt~~G~i~e~~i~~~~~~~~~~k~v~~l~~~~~~I~gi~~ 173 (936)
. .++.-..+.| ..+.|.-|-++ +.||.|+-+...-.-.|+.+ +++..+.+-.+-|.+|.+
T Consensus 129 ~d~~g~~~v~r~l~gHtgylScC~f~dD-------~~ilT~SGD~TCalWDie~g-------~~~~~f~GH~gDV~slsl 194 (343)
T KOG0286|consen 129 RDAEGNVRVSRELAGHTGYLSCCRFLDD-------NHILTGSGDMTCALWDIETG-------QQTQVFHGHTGDVMSLSL 194 (343)
T ss_pred ccccccceeeeeecCccceeEEEEEcCC-------CceEecCCCceEEEEEcccc-------eEEEEecCCcccEEEEec
Confidence 1 1112122344 47888888743 38998888877666666554 222233332355888887
Q ss_pred EeeccCCCceEEEEEECCCeEEEEec
Q 002318 174 ETASLSNGTRYYVMAVTPTRLYSFTG 199 (936)
Q Consensus 174 ~~~~~~~~~~~~i~ast~~rly~f~~ 199 (936)
.. ++.+.+|-.+....-+-|.-
T Consensus 195 ~p----~~~ntFvSg~cD~~aklWD~ 216 (343)
T KOG0286|consen 195 SP----SDGNTFVSGGCDKSAKLWDV 216 (343)
T ss_pred CC----CCCCeEEecccccceeeeec
Confidence 63 23355555555555665653
No 354
>PF11598 COMP: Cartilage oligomeric matrix protein; InterPro: IPR024665 Thrombospondins are adhesive glycoproteins that mediate cell-to-cell and cell-to-matrix interactions. Cartilage oligomeric matrix protein may play a role in the structural integrity of cartilage via its interaction with other extracellular matrix proteins such as collagen and fibronectin [, ]. Thrombospondin 3 and 4 and cartilage oligomeric matrix proteins contain a five-stranded coiled-coil domain represented by this entry. This domain has a binding site between two internal rings formed by Leu37 and Thr40 [].; PDB: 1MZ9_D 1FBM_A 1VDF_E.
Probab=45.78 E-value=84 Score=24.05 Aligned_cols=23 Identities=17% Similarity=0.433 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 002318 786 EAICSSLDDYNKQIEQLKQEMND 808 (936)
Q Consensus 786 d~I~~~L~~y~~~i~~l~~~m~~ 808 (936)
..|.+.|.+.+.-+..++..|+.
T Consensus 4 ~~l~~ql~~l~~~l~elk~~l~~ 26 (45)
T PF11598_consen 4 SQLIKQLSELNQMLQELKELLRQ 26 (45)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666677777666666655554
No 355
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=45.68 E-value=4.3e+02 Score=32.46 Aligned_cols=146 Identities=16% Similarity=0.202 Sum_probs=86.9
Q ss_pred eeEEEEeCCEEEEEecCCeEEEEeC-CCCCceeeEcCCCCCCccceeEEEeCCCCCeEEEEeecCCCccEEEEec-----
Q 002318 24 ITCMSAGNDVIVLGTSKGWLIRHDF-GAGDSYDIDLSAGRPGEQSIHKVFVDPGGSHCIATIVGSGGAETFYTHA----- 97 (936)
Q Consensus 24 i~~l~v~~n~l~l~~~~g~l~ridl-~~~~~~~~~l~~~~~~~~~i~~i~lDp~G~hlli~~~~~~~g~~~Y~~~----- 97 (936)
.+++.=.++.+++|+.+|.|-.+|+ ..+.++.++-| ++.|=.|-+-|.|.-++..+. |-.+-++..
T Consensus 417 ~~~Fvpgd~~Iv~G~k~Gel~vfdlaS~~l~Eti~AH-----dgaIWsi~~~pD~~g~vT~sa---DktVkfWdf~l~~~ 488 (888)
T KOG0306|consen 417 ASKFVPGDRYIVLGTKNGELQVFDLASASLVETIRAH-----DGAIWSISLSPDNKGFVTGSA---DKTVKFWDFKLVVS 488 (888)
T ss_pred EEEecCCCceEEEeccCCceEEEEeehhhhhhhhhcc-----ccceeeeeecCCCCceEEecC---CcEEEEEeEEEEec
Confidence 4677778889999999999999999 88888888877 678888888888887666554 444433321
Q ss_pred -CCCCceecc-------CCCCceEEEEEecCCCCCCCCcceEE-EEcCCCcEEEEEEecCCcccceeeEEeeeCCCCCce
Q 002318 98 -KWSKPRVLS-------KLKGLVVNAVAWNRQQITEASTKEII-LGTDTGQLHEMAVDEKDKREKYIKLLFELNELPEAF 168 (936)
Q Consensus 98 -~~~k~k~L~-------klkg~~I~sVaw~~~~~~~~st~~iL-iGt~~G~i~e~~i~~~~~~~~~~k~v~~l~~~~~~I 168 (936)
..++-|.|+ ++ --.|-||...|+ +.+| +|--+..+--+.++. .+.+-.+| +-.=||
T Consensus 489 ~~gt~~k~lsl~~~rtLel-~ddvL~v~~Spd-------gk~LaVsLLdnTVkVyflDt----lKFflsLY---GHkLPV 553 (888)
T KOG0306|consen 489 VPGTQKKVLSLKHTRTLEL-EDDVLCVSVSPD-------GKLLAVSLLDNTVKVYFLDT----LKFFLSLY---GHKLPV 553 (888)
T ss_pred cCcccceeeeeccceEEec-cccEEEEEEcCC-------CcEEEEEeccCeEEEEEecc----eeeeeeec---ccccce
Confidence 122222221 11 237888888843 2333 343343333333332 12233333 211358
Q ss_pred eeEEEEeeccCCCceEEEEEECCCeEEEE
Q 002318 169 MGLQMETASLSNGTRYYVMAVTPTRLYSF 197 (936)
Q Consensus 169 ~gi~~~~~~~~~~~~~~i~ast~~rly~f 197 (936)
+++.+.. +...++-.+.+..+--|
T Consensus 554 ~smDIS~-----DSklivTgSADKnVKiW 577 (888)
T KOG0306|consen 554 LSMDISP-----DSKLIVTGSADKNVKIW 577 (888)
T ss_pred eEEeccC-----CcCeEEeccCCCceEEe
Confidence 8888763 23455554445555555
No 356
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=45.66 E-value=61 Score=30.31 Aligned_cols=49 Identities=18% Similarity=0.136 Sum_probs=32.2
Q ss_pred HHHchhhHHHHHHhcCCh----hhHHHHHHHHHHHHHhcCCHHHHHHHHHHhc
Q 002318 370 VYLDMKEYAAALANCRDP----LQRDQVYLVQAEAAFATKDFHRAASFYAKIN 418 (936)
Q Consensus 370 ~ll~~~~f~~Al~~~~~~----~~~~~I~~~~~~~L~~~g~y~~Aa~~y~~~~ 418 (936)
.+++.|+|++|++..+.- ..-..+....|.-++..|+|.+|...|.+..
T Consensus 26 ~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~ 78 (135)
T TIGR02552 26 NLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAA 78 (135)
T ss_pred HHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356677888887775421 1223555666777777788888887777664
No 357
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=45.54 E-value=2.4e+02 Score=31.18 Aligned_cols=115 Identities=16% Similarity=0.129 Sum_probs=57.9
Q ss_pred CceeEEEEeCCEEEEEecCCeEEEEeC--CCCCceeeEcCCCCCCccceeEEEe-CCCCCeEEEEeecCCCccEEEEecC
Q 002318 22 GVITCMSAGNDVIVLGTSKGWLIRHDF--GAGDSYDIDLSAGRPGEQSIHKVFV-DPGGSHCIATIVGSGGAETFYTHAK 98 (936)
Q Consensus 22 ~~i~~l~v~~n~l~l~~~~g~l~ridl--~~~~~~~~~l~~~~~~~~~i~~i~l-Dp~G~hlli~~~~~~~g~~~Y~~~~ 98 (936)
-.++++.+.+|.+++|..-..+..+.. .+.....+- +...+.....--|+ |. ..++++-. +|..+.+...
T Consensus 130 ~~i~sl~~~~~~I~vgD~~~sv~~~~~~~~~~~l~~va--~d~~~~~v~~~~~l~d~--~~~i~~D~---~gnl~~l~~~ 202 (321)
T PF03178_consen 130 FYITSLSVFKNYILVGDAMKSVSLLRYDEENNKLILVA--RDYQPRWVTAAEFLVDE--DTIIVGDK---DGNLFVLRYN 202 (321)
T ss_dssp SSEEEEEEETTEEEEEESSSSEEEEEEETTTE-EEEEE--EESS-BEEEEEEEE-SS--SEEEEEET---TSEEEEEEE-
T ss_pred EEEEEEeccccEEEEEEcccCEEEEEEEccCCEEEEEE--ecCCCccEEEEEEecCC--cEEEEEcC---CCeEEEEEEC
Confidence 368999999999999998777766644 333333221 11111223344455 55 44444444 5665544332
Q ss_pred CC---------CceeccCC-CCceEEEE---EecCCCCCCC---CcceEEEEcCCCcEEEEE
Q 002318 99 WS---------KPRVLSKL-KGLVVNAV---AWNRQQITEA---STKEIILGTDTGQLHEMA 144 (936)
Q Consensus 99 ~~---------k~k~L~kl-kg~~I~sV---aw~~~~~~~~---st~~iLiGt~~G~i~e~~ 144 (936)
.. +......+ -|-.|+++ ...+. .... ....++.||.+|.|+...
T Consensus 203 ~~~~~~~~~~~~L~~~~~f~lg~~v~~~~~~~l~~~-~~~~~~~~~~~i~~~T~~G~Ig~l~ 263 (321)
T PF03178_consen 203 PEIPNSRDGDPKLERISSFHLGDIVNSFRRGSLIPR-SGSSESPNRPQILYGTVDGSIGVLI 263 (321)
T ss_dssp SS-SSTTTTTTBEEEEEEEE-SS-EEEEEE--SS---SSSS-TTEEEEEEEEETTS-EEEEE
T ss_pred CCCcccccccccceeEEEEECCCccceEEEEEeeec-CCCCcccccceEEEEecCCEEEEEE
Confidence 11 22222221 14567776 54432 1111 124699999999999543
No 358
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=45.23 E-value=5.6e+02 Score=32.64 Aligned_cols=50 Identities=14% Similarity=0.228 Sum_probs=40.7
Q ss_pred HHHHchhhHHHHHHhcCCh-------hhHHHHHHHHHHHHHhcCCHHHHHHHHHHhc
Q 002318 369 KVYLDMKEYAAALANCRDP-------LQRDQVYLVQAEAAFATKDFHRAASFYAKIN 418 (936)
Q Consensus 369 ~~ll~~~~f~~Al~~~~~~-------~~~~~I~~~~~~~L~~~g~y~~Aa~~y~~~~ 418 (936)
..|+.+|+|+.++.++.+. ..+..=....|..+-.+|+|++|.++|.++.
T Consensus 278 n~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~ 334 (1018)
T KOG2002|consen 278 NHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESL 334 (1018)
T ss_pred HHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHH
Confidence 4488899999999998742 2344556788899999999999999999876
No 359
>KOG2005 consensus 26S proteasome regulatory complex, subunit RPN1/PSMD2 [Posttranslational modification, protein turnover, chaperones]
Probab=45.17 E-value=58 Score=38.99 Aligned_cols=52 Identities=23% Similarity=0.207 Sum_probs=42.1
Q ss_pred eehhhhccccHHHHHHHHHh-cCHHHHHHHhhccCCCHHHHHHHHHHHHHHHhh
Q 002318 690 CVHIYGMMSMHEEAVALALQ-VDPELAMAEADKVEDDEDLRKKLWLMVAKHVIE 742 (936)
Q Consensus 690 ~v~L~~~~g~~~eAl~l~l~-~di~lA~~~a~~~~~d~~~~kkLWl~ll~~~i~ 742 (936)
.--||.+++.|-+||..++. +|.+.+++++.... |+..+|++--.|+++=+.
T Consensus 245 a~~IYlKf~~~~~al~~ai~l~~~~~v~~vf~s~~-D~~~kKQ~~ymLaR~~i~ 297 (878)
T KOG2005|consen 245 ALKIYLKFNEYPRALVGAIRLDDMKEVKEVFTSCT-DPLLKKQMAYMLARHGIY 297 (878)
T ss_pred HHHHHHHHHHhHHHHHHHHhcCcHHHHHHHHHhcc-CHHHHHHHHHHHHhcCCc
Confidence 34578999999999999999 89999999996554 787888777777766543
No 360
>PF13934 ELYS: Nuclear pore complex assembly
Probab=45.09 E-value=50 Score=34.78 Aligned_cols=52 Identities=17% Similarity=0.168 Sum_probs=29.5
Q ss_pred hhhHHHHHHchhhHHHHHHhcCChhhHHHHHHHHHHHHHhcCCHHHHHHHHHHh
Q 002318 364 GRDMWKVYLDMKEYAAALANCRDPLQRDQVYLVQAEAAFATKDFHRAASFYAKI 417 (936)
Q Consensus 364 ~~~~W~~ll~~~~f~~Al~~~~~~~~~~~I~~~~~~~L~~~g~y~~Aa~~y~~~ 417 (936)
-+.-| ++++++|++|+++.-+|.....-..+-...|+.+|++..|.+++-..
T Consensus 83 ~~g~W--~LD~~~~~~A~~~L~~ps~~~~~~~~Il~~L~~~~~~~lAL~y~~~~ 134 (226)
T PF13934_consen 83 IQGFW--LLDHGDFEEALELLSHPSLIPWFPDKILQALLRRGDPKLALRYLRAV 134 (226)
T ss_pred HHHHH--HhChHhHHHHHHHhCCCCCCcccHHHHHHHHHHCCChhHHHHHHHhc
Confidence 35567 77777777777776554332222333444555567777555555444
No 361
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=45.07 E-value=4.4e+02 Score=31.69 Aligned_cols=144 Identities=10% Similarity=0.154 Sum_probs=82.3
Q ss_pred CceeEEEEeCCEEEEEecCCeEEEEeCC-CCCceeeEcCCCCCCccceeEEEeCCCCCeEEEEeecCCCccEEEEecCCC
Q 002318 22 GVITCMSAGNDVIVLGTSKGWLIRHDFG-AGDSYDIDLSAGRPGEQSIHKVFVDPGGSHCIATIVGSGGAETFYTHAKWS 100 (936)
Q Consensus 22 ~~i~~l~v~~n~l~l~~~~g~l~ridl~-~~~~~~~~l~~~~~~~~~i~~i~lDp~G~hlli~~~~~~~g~~~Y~~~~~~ 100 (936)
++|.|+...++.++-|...|+|-.||.. ..-+....-+ ..+|..+.+|+. .+++-.+. ++..--+.....
T Consensus 332 ~~V~~v~~~~~~lvsgs~d~~v~VW~~~~~~cl~sl~gH-----~~~V~sl~~~~~-~~~~Sgs~---D~~IkvWdl~~~ 402 (537)
T KOG0274|consen 332 GPVNCVQLDEPLLVSGSYDGTVKVWDPRTGKCLKSLSGH-----TGRVYSLIVDSE-NRLLSGSL---DTTIKVWDLRTK 402 (537)
T ss_pred ccEEEEEecCCEEEEEecCceEEEEEhhhceeeeeecCC-----cceEEEEEecCc-ceEEeeee---ccceEeecCCch
Confidence 4699999999999999999999999993 3333333333 478999999877 77777766 554434443333
Q ss_pred CceeccCCCCc--eEEEEEecCCCCCCCCcceEEEE-cCCCcEEEEEEecCCcccceeeEEeeeCCCCCceeeEEEEeec
Q 002318 101 KPRVLSKLKGL--VVNAVAWNRQQITEASTKEIILG-TDTGQLHEMAVDEKDKREKYIKLLFELNELPEAFMGLQMETAS 177 (936)
Q Consensus 101 k~k~L~klkg~--~I~sVaw~~~~~~~~st~~iLiG-t~~G~i~e~~i~~~~~~~~~~k~v~~l~~~~~~I~gi~~~~~~ 177 (936)
+ +-+.-++|+ .+.++.. .+.+|+. +.+|.|-.-.++.. .+..+++-+. -+.|+.+.+.
T Consensus 403 ~-~c~~tl~~h~~~v~~l~~---------~~~~Lvs~~aD~~Ik~WD~~~~-----~~~~~~~~~~-~~~v~~l~~~--- 463 (537)
T KOG0274|consen 403 R-KCIHTLQGHTSLVSSLLL---------RDNFLVSSSADGTIKLWDAEEG-----ECLRTLEGRH-VGGVSALALG--- 463 (537)
T ss_pred h-hhhhhhcCCccccccccc---------ccceeEeccccccEEEeecccC-----ceeeeeccCC-cccEEEeecC---
Confidence 1 222223332 2222111 2355554 67897766544332 2333322221 1334444442
Q ss_pred cCCCceEEEEEECCCeEEEE
Q 002318 178 LSNGTRYYVMAVTPTRLYSF 197 (936)
Q Consensus 178 ~~~~~~~~i~ast~~rly~f 197 (936)
...++.++++..++-|
T Consensus 464 ----~~~il~s~~~~~~~l~ 479 (537)
T KOG0274|consen 464 ----KEEILCSSDDGSVKLW 479 (537)
T ss_pred ----cceEEEEecCCeeEEE
Confidence 1355665667777766
No 362
>PRK01742 tolB translocation protein TolB; Provisional
Probab=44.67 E-value=3e+02 Score=31.95 Aligned_cols=111 Identities=15% Similarity=0.194 Sum_probs=61.6
Q ss_pred CCCceeEEEEeCC--EEEEE-ecC--CeEEEEeCCCCCceeeE-cCCCCCCccceeEEEeCCCCCeEEEEeecCCCc--c
Q 002318 20 GRGVITCMSAGND--VIVLG-TSK--GWLIRHDFGAGDSYDID-LSAGRPGEQSIHKVFVDPGGSHCIATIVGSGGA--E 91 (936)
Q Consensus 20 ~~~~i~~l~v~~n--~l~l~-~~~--g~l~ridl~~~~~~~~~-l~~~~~~~~~i~~i~lDp~G~hlli~~~~~~~g--~ 91 (936)
+.+.+.+.+.+.+ .|+.+ ..+ ..|+++|+...+...+. .+ +....+-..|.|.++++++.. +| .
T Consensus 202 ~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~~~~------g~~~~~~wSPDG~~La~~~~~--~g~~~ 273 (429)
T PRK01742 202 SSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVVASFR------GHNGAPAFSPDGSRLAFASSK--DGVLN 273 (429)
T ss_pred CCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEEecCC------CccCceeECCCCCEEEEEEec--CCcEE
Confidence 3445677777655 44443 332 47999999322222221 11 122346778999999887641 34 3
Q ss_pred EEEEecCCCCceeccCCCCceEEEEEecCCCCCCCCcceEEEEcC-CC--cEEEEEE
Q 002318 92 TFYTHAKWSKPRVLSKLKGLVVNAVAWNRQQITEASTKEIILGTD-TG--QLHEMAV 145 (936)
Q Consensus 92 ~~Y~~~~~~k~k~L~klkg~~I~sVaw~~~~~~~~st~~iLiGt~-~G--~i~e~~i 145 (936)
.|-++....+.+.|..- ...+.+++|.++ ...|+..+. +| .||....
T Consensus 274 Iy~~d~~~~~~~~lt~~-~~~~~~~~wSpD------G~~i~f~s~~~g~~~I~~~~~ 323 (429)
T PRK01742 274 IYVMGANGGTPSQLTSG-AGNNTEPSWSPD------GQSILFTSDRSGSPQVYRMSA 323 (429)
T ss_pred EEEEECCCCCeEeeccC-CCCcCCEEECCC------CCEEEEEECCCCCceEEEEEC
Confidence 34455555566777653 346789999843 224555543 35 4454433
No 363
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=44.26 E-value=3.5e+02 Score=35.20 Aligned_cols=157 Identities=12% Similarity=0.172 Sum_probs=94.7
Q ss_pred CceeEEEEeCC---EEEEEecCCeEEEEeC---CCC-CceeeEcCCCCCCccceeEEEeCCCCCeEEEEeecCCCccEEE
Q 002318 22 GVITCMSAGND---VIVLGTSKGWLIRHDF---GAG-DSYDIDLSAGRPGEQSIHKVFVDPGGSHCIATIVGSGGAETFY 94 (936)
Q Consensus 22 ~~i~~l~v~~n---~l~l~~~~g~l~ridl---~~~-~~~~~~l~~~~~~~~~i~~i~lDp~G~hlli~~~~~~~g~~~Y 94 (936)
.++..+||+.. +++-|-.+|+|-.||+ .++ .+.+-++--.. ...++..+=+=+.|+.+.++++ ||.+-.
T Consensus 1049 ~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~-~~sr~~~vt~~~~~~~~Av~t~---DG~v~~ 1124 (1431)
T KOG1240|consen 1049 SAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSP-EGSRVEKVTMCGNGDQFAVSTK---DGSVRV 1124 (1431)
T ss_pred ccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEec-cCCceEEEEeccCCCeEEEEcC---CCeEEE
Confidence 45567777765 4566678899999999 222 23332222111 2467788888889999999988 998865
Q ss_pred EecCC---C-----Ccee--ccCCCCceEEEEEecCCCCCCCCcceEEEEcCCCcEEEEEEecCCcccceeeEEe--eeC
Q 002318 95 THAKW---S-----KPRV--LSKLKGLVVNAVAWNRQQITEASTKEIILGTDTGQLHEMAVDEKDKREKYIKLLF--ELN 162 (936)
Q Consensus 95 ~~~~~---~-----k~k~--L~klkg~~I~sVaw~~~~~~~~st~~iLiGt~~G~i~e~~i~~~~~~~~~~k~v~--~l~ 162 (936)
+.... . +.|. +. ..|..+..-|++.. .-+--++.+|..|.|..-.+... ..++ +.+
T Consensus 1125 ~~id~~~~~~~~~~~~ri~n~~-~~g~vv~m~a~~~~----~~S~~lvy~T~~~~iv~~D~r~~-------~~~w~lk~~ 1192 (1431)
T KOG1240|consen 1125 LRIDHYNVSKRVATQVRIPNLK-KDGVVVSMHAFTAI----VQSHVLVYATDLSRIVSWDTRMR-------HDAWRLKNQ 1192 (1431)
T ss_pred EEccccccccceeeeeeccccc-CCCceEEeeccccc----ccceeEEEEEeccceEEecchhh-------hhHHhhhcC
Confidence 43222 1 1111 22 24677777777622 11235677888877765443221 1111 222
Q ss_pred CCCCceeeEEEEeeccCCCceEEEEEECCCeEEEEec
Q 002318 163 ELPEAFMGLQMETASLSNGTRYYVMAVTPTRLYSFTG 199 (936)
Q Consensus 163 ~~~~~I~gi~~~~~~~~~~~~~~i~ast~~rly~f~~ 199 (936)
...|-|+++.+.. ...|+++.||...|--|+=
T Consensus 1193 ~~hG~vTSi~idp-----~~~WlviGts~G~l~lWDL 1224 (1431)
T KOG1240|consen 1193 LRHGLVTSIVIDP-----WCNWLVIGTSRGQLVLWDL 1224 (1431)
T ss_pred ccccceeEEEecC-----CceEEEEecCCceEEEEEe
Confidence 2347799999974 2358999888888887863
No 364
>PF07754 DUF1610: Domain of unknown function (DUF1610); InterPro: IPR011668 This domain is found in archaeal species. It is likely to bind zinc via its four well-conserved cysteine residues.
Probab=44.11 E-value=10 Score=24.81 Aligned_cols=10 Identities=40% Similarity=0.833 Sum_probs=8.7
Q ss_pred ccccchhhhh
Q 002318 836 CGVCRRKILV 845 (936)
Q Consensus 836 C~~C~k~L~~ 845 (936)
|..||..|..
T Consensus 1 C~sC~~~i~~ 10 (24)
T PF07754_consen 1 CTSCGRPIAP 10 (24)
T ss_pred CccCCCcccC
Confidence 7889999888
No 365
>PF10571 UPF0547: Uncharacterised protein family UPF0547; InterPro: IPR018886 This domain may well be a type of zinc-finger as it carries two pairs of highly conserved cysteine residues though with no accompanying histidines. Several members are annotated as putative helicases.
Probab=43.96 E-value=8.3 Score=25.71 Aligned_cols=11 Identities=18% Similarity=0.546 Sum_probs=8.7
Q ss_pred cccccchhhhh
Q 002318 835 DCGVCRRKILV 845 (936)
Q Consensus 835 ~C~~C~k~L~~ 845 (936)
.|..|++.+..
T Consensus 2 ~CP~C~~~V~~ 12 (26)
T PF10571_consen 2 TCPECGAEVPE 12 (26)
T ss_pred cCCCCcCCchh
Confidence 68888888766
No 366
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=43.49 E-value=4.5e+02 Score=30.35 Aligned_cols=155 Identities=16% Similarity=0.131 Sum_probs=97.8
Q ss_pred CCceeEEEEeC--CEEEEEecCCeEEEEeCCCCCceeeEcCCCCCCccceeEEEeCCCCCeEEEEeecCCCccEEEEecC
Q 002318 21 RGVITCMSAGN--DVIVLGTSKGWLIRHDFGAGDSYDIDLSAGRPGEQSIHKVFVDPGGSHCIATIVGSGGAETFYTHAK 98 (936)
Q Consensus 21 ~~~i~~l~v~~--n~l~l~~~~g~l~ridl~~~~~~~~~l~~~~~~~~~i~~i~lDp~G~hlli~~~~~~~g~~~Y~~~~ 98 (936)
++.|..+.+.. +.+++|-.+.++..|++ |++++.|-.+. .+.|..+.+ -+-.|.++-++ +|..+-+...
T Consensus 286 qd~v~~IdaL~reR~vtVGgrDrT~rlwKi-~eesqlifrg~----~~sidcv~~-In~~HfvsGSd---nG~IaLWs~~ 356 (479)
T KOG0299|consen 286 QDGVLGIDALSRERCVTVGGRDRTVRLWKI-PEESQLIFRGG----EGSIDCVAF-INDEHFVSGSD---NGSIALWSLL 356 (479)
T ss_pred ccceeeechhcccceEEeccccceeEEEec-cccceeeeeCC----CCCeeeEEE-ecccceeeccC---CceEEEeeec
Confidence 45677776654 57788888999999999 77776554442 356666665 23568888888 9999888765
Q ss_pred CCCceeccCC--------C--C--ceEEEEEecCCCCCCCCcceEEEEcCCCcEEEEEEecCCcccceeeEEeeeCCCCC
Q 002318 99 WSKPRVLSKL--------K--G--LVVNAVAWNRQQITEASTKEIILGTDTGQLHEMAVDEKDKREKYIKLLFELNELPE 166 (936)
Q Consensus 99 ~~k~k~L~kl--------k--g--~~I~sVaw~~~~~~~~st~~iLiGt~~G~i~e~~i~~~~~~~~~~k~v~~l~~~~~ 166 (936)
..||-...++ . + .=|+|||-.+. +.=+..|.-+|.|=.-.+..+ .+.+..++.++ ..+
T Consensus 357 KKkplf~~~~AHgv~~~~~~~~~~~Witsla~i~~------sdL~asGS~~G~vrLW~i~~g---~r~i~~l~~ls-~~G 426 (479)
T KOG0299|consen 357 KKKPLFTSRLAHGVIPELDPVNGNFWITSLAVIPG------SDLLASGSWSGCVRLWKIEDG---LRAINLLYSLS-LVG 426 (479)
T ss_pred ccCceeEeeccccccCCccccccccceeeeEeccc------CceEEecCCCCceEEEEecCC---ccccceeeecc-ccc
Confidence 5444332221 0 0 14778887732 224556777887776666554 34567777777 357
Q ss_pred ceeeEEEEeeccCCCceEEEEEEC-CCeEEEEec
Q 002318 167 AFMGLQMETASLSNGTRYYVMAVT-PTRLYSFTG 199 (936)
Q Consensus 167 ~I~gi~~~~~~~~~~~~~~i~ast-~~rly~f~~ 199 (936)
-|.+|.|.. +.++++.... -+|+=.|..
T Consensus 427 fVNsl~f~~-----sgk~ivagiGkEhRlGRW~~ 455 (479)
T KOG0299|consen 427 FVNSLAFSN-----SGKRIVAGIGKEHRLGRWWC 455 (479)
T ss_pred EEEEEEEcc-----CCCEEEEecccccccceeeE
Confidence 799999863 2233443332 567777754
No 367
>COG5184 ATS1 Alpha-tubulin suppressor and related RCC1 domain-containing proteins [Cell division and chromosome partitioning / Cytoskeleton]
Probab=43.40 E-value=5.8e+02 Score=29.75 Aligned_cols=69 Identities=22% Similarity=0.296 Sum_probs=45.1
Q ss_pred cCCCceeEEEEeCCEEEEEecCCeEEEEeC-CCCC--------cee--e-EcCCCCCCccceeEEEeCCCCCeEEEEeec
Q 002318 19 KGRGVITCMSAGNDVIVLGTSKGWLIRHDF-GAGD--------SYD--I-DLSAGRPGEQSIHKVFVDPGGSHCIATIVG 86 (936)
Q Consensus 19 ~~~~~i~~l~v~~n~l~l~~~~g~l~ridl-~~~~--------~~~--~-~l~~~~~~~~~i~~i~lDp~G~hlli~~~~ 86 (936)
+++-.++.|+.+.+++++.+++|.|+-++- +-.+ .++ + ..|.... +..| +=+++.+.|++++++
T Consensus 173 ~s~~~vv~l~cg~e~svil~~~G~V~~~gt~r~~e~~~g~~~~s~k~~~~~~p~~v~-~~~i--~qla~G~dh~i~lt~- 248 (476)
T COG5184 173 KSHLRVVKLACGWEISVILTADGRVYSWGTFRCGELGQGSYKNSQKTSIQFTPLKVP-KKAI--VQLAAGADHLIALTN- 248 (476)
T ss_pred cCChheEEeecCCceEEEEccCCcEEEecCccccccccccccccccceeeeeeeecC-chhe--eeeccCCceEEEEec-
Confidence 344468999999999999999999998854 1111 111 1 1222111 1122 335788999999999
Q ss_pred CCCccEE
Q 002318 87 SGGAETF 93 (936)
Q Consensus 87 ~~~g~~~ 93 (936)
.|.+|
T Consensus 249 --~G~vy 253 (476)
T COG5184 249 --EGKVY 253 (476)
T ss_pred --CCcEE
Confidence 88887
No 368
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=43.15 E-value=1.5e+02 Score=37.58 Aligned_cols=94 Identities=13% Similarity=0.096 Sum_probs=59.9
Q ss_pred eeEEEEeCCEEEEEecCCeEEEEeC-CCCCceeeEcCCCCCCccceeEEEeCCCCCe-EEEEeecCCCccEEEEecCC-C
Q 002318 24 ITCMSAGNDVIVLGTSKGWLIRHDF-GAGDSYDIDLSAGRPGEQSIHKVFVDPGGSH-CIATIVGSGGAETFYTHAKW-S 100 (936)
Q Consensus 24 i~~l~v~~n~l~l~~~~g~l~ridl-~~~~~~~~~l~~~~~~~~~i~~i~lDp~G~h-lli~~~~~~~g~~~Y~~~~~-~ 100 (936)
.++=.+++|+++.|+.+|.|-.+|- -|..-.-+..-+......+|.++.+-+.|.- ++..+. +|+.+.+.... .
T Consensus 1214 LS~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~---~G~I~~~DlR~~~ 1290 (1387)
T KOG1517|consen 1214 LSADLVHGNIIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQRQGLGELVSGSQ---DGDIQLLDLRMSS 1290 (1387)
T ss_pred ecccccCCceEEEeecCCceEEeecccCCccccceeecccCCcccceeEEeecCCCcceeeecc---CCeEEEEecccCc
Confidence 3444577899999999999999998 3322111222222222345999999887765 666666 89999988766 3
Q ss_pred CceeccCCC----CceEEEEEecC
Q 002318 101 KPRVLSKLK----GLVVNAVAWNR 120 (936)
Q Consensus 101 k~k~L~klk----g~~I~sVaw~~ 120 (936)
+.-.+.--. |-..++..-.+
T Consensus 1291 ~e~~~~iv~~~~yGs~lTal~VH~ 1314 (1387)
T KOG1517|consen 1291 KETFLTIVAHWEYGSALTALTVHE 1314 (1387)
T ss_pred ccccceeeeccccCccceeeeecc
Confidence 333333222 54577777763
No 369
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=42.85 E-value=4.4e+02 Score=28.03 Aligned_cols=63 Identities=19% Similarity=0.221 Sum_probs=40.8
Q ss_pred EeCCCCCeEEEEeecCCCccEEEEec-CCCCceeccCCCCceEEEEEecCCCCCCCCcceEEEEcCCCcEEEEEEec
Q 002318 72 FVDPGGSHCIATIVGSGGAETFYTHA-KWSKPRVLSKLKGLVVNAVAWNRQQITEASTKEIILGTDTGQLHEMAVDE 147 (936)
Q Consensus 72 ~lDp~G~hlli~~~~~~~g~~~Y~~~-~~~k~k~L~klkg~~I~sVaw~~~~~~~~st~~iLiGt~~G~i~e~~i~~ 147 (936)
..+..|.++++.|+ +| .|+... +..+.+.+.+.+ .|+.++-.+.. .+|+-=.+|.|+.+.++.
T Consensus 2 c~~~~~~~L~vGt~---~G-l~~~~~~~~~~~~~i~~~~--~I~ql~vl~~~-------~~llvLsd~~l~~~~L~~ 65 (275)
T PF00780_consen 2 CADSWGDRLLVGTE---DG-LYVYDLSDPSKPTRILKLS--SITQLSVLPEL-------NLLLVLSDGQLYVYDLDS 65 (275)
T ss_pred CcccCCCEEEEEEC---CC-EEEEEecCCccceeEeecc--eEEEEEEeccc-------CEEEEEcCCccEEEEchh
Confidence 34678999999999 88 554444 444445544333 48888888432 344444568899888753
No 370
>PF12451 VPS11_C: Vacuolar protein sorting protein 11 C terminal; InterPro: IPR024763 Vps 11 is one of the evolutionarily conserved class C vacuolar protein sorting genes (c-vps: vps11, vps16, vps18, and vps33), whose products physically associate to form the c-vps protein complex required for vesicle docking and fusion. This entry represents the C-terminal domain of vps11.
Probab=42.85 E-value=12 Score=29.23 Aligned_cols=22 Identities=5% Similarity=-0.020 Sum_probs=19.5
Q ss_pred hHHHHHHHhhhccCCccccccc
Q 002318 892 VSVVDIVLSYKRLQSGWNTVAS 913 (936)
Q Consensus 892 ~~~~~~~~~~~~~~~~~~~~~~ 913 (936)
.....|+.+|++++|||.+||.
T Consensus 19 ~~~d~F~~~L~~s~D~F~vIae 40 (49)
T PF12451_consen 19 DQHDLFFKQLEESEDRFSVIAE 40 (49)
T ss_pred hcHHHHHHHHHhCCCCchhHHH
Confidence 4488899999999999999984
No 371
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=42.60 E-value=66 Score=36.45 Aligned_cols=49 Identities=16% Similarity=0.172 Sum_probs=38.6
Q ss_pred HHHchhhHHHHHHhcCChh----hHHHHHHHHHHHHHhcCCHHHHHHHHHHhc
Q 002318 370 VYLDMKEYAAALANCRDPL----QRDQVYLVQAEAAFATKDFHRAASFYAKIN 418 (936)
Q Consensus 370 ~ll~~~~f~~Al~~~~~~~----~~~~I~~~~~~~L~~~g~y~~Aa~~y~~~~ 418 (936)
.++..|+|++|+++.+... .-...+...|..++..|+|++|...+.+..
T Consensus 11 ~a~~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al 63 (356)
T PLN03088 11 EAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAI 63 (356)
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3677889999998865321 234677888999999999999999998875
No 372
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=42.58 E-value=4.8e+02 Score=28.35 Aligned_cols=188 Identities=15% Similarity=0.119 Sum_probs=91.0
Q ss_pred EEEeCCE-EEEEecCCeEEEEeCCCCCceeeEcCCCCCC----------------------------ccceeEEEeCCCC
Q 002318 27 MSAGNDV-IVLGTSKGWLIRHDFGAGDSYDIDLSAGRPG----------------------------EQSIHKVFVDPGG 77 (936)
Q Consensus 27 l~v~~n~-l~l~~~~g~l~ridl~~~~~~~~~l~~~~~~----------------------------~~~i~~i~lDp~G 77 (936)
+.+..+- .|+.-...-|.|+|-..-+++++++|..... ...+.++|--|.|
T Consensus 109 iv~gpdg~~Witd~~~aI~R~dpkt~evt~f~lp~~~a~~nlet~vfD~~G~lWFt~q~G~yGrLdPa~~~i~vfpaPqG 188 (353)
T COG4257 109 IVVGPDGSAWITDTGLAIGRLDPKTLEVTRFPLPLEHADANLETAVFDPWGNLWFTGQIGAYGRLDPARNVISVFPAPQG 188 (353)
T ss_pred EEECCCCCeeEecCcceeEEecCcccceEEeecccccCCCcccceeeCCCccEEEeeccccceecCcccCceeeeccCCC
Confidence 3444443 3443333389999996667899999976331 1233444444443
Q ss_pred Ce-EEEEeecCCCccEEEEecCCCCceeccCCCCceEEE-----------EEecCCCCCCCCcceEEEEcCC-CcEEEEE
Q 002318 78 SH-CIATIVGSGGAETFYTHAKWSKPRVLSKLKGLVVNA-----------VAWNRQQITEASTKEIILGTDT-GQLHEMA 144 (936)
Q Consensus 78 ~h-lli~~~~~~~g~~~Y~~~~~~k~k~L~klkg~~I~s-----------Vaw~~~~~~~~st~~iLiGt~~-G~i~e~~ 144 (936)
.- -.||.+ .+|++||....-+-.-.+--+.|+.=.- =.|.+ +-|.+=+-|.. |.++-+
T Consensus 189 ~gpyGi~at--pdGsvwyaslagnaiaridp~~~~aev~p~P~~~~~gsRriwsd------pig~~wittwg~g~l~rf- 259 (353)
T COG4257 189 GGPYGICAT--PDGSVWYASLAGNAIARIDPFAGHAEVVPQPNALKAGSRRIWSD------PIGRAWITTWGTGSLHRF- 259 (353)
T ss_pred CCCcceEEC--CCCcEEEEeccccceEEcccccCCcceecCCCcccccccccccC------ccCcEEEeccCCceeeEe-
Confidence 32 233433 2789988754333222222222211000 11221 22344444332 444433
Q ss_pred EecCCcccceeeEEeeeCCCCCceeeEEEEeeccCCCceEEEEEEC--CCeEEEEecCCchHHHHhhhhcccccccccCC
Q 002318 145 VDEKDKREKYIKLLFELNELPEAFMGLQMETASLSNGTRYYVMAVT--PTRLYSFTGFGSLDTVFASYLDRAVHFMELPG 222 (936)
Q Consensus 145 i~~~~~~~~~~k~v~~l~~~~~~I~gi~~~~~~~~~~~~~~i~ast--~~rly~f~~~~~l~~~f~~~~~~~~~~~el~~ 222 (936)
++. ..++.. |.||+....-.++.++. +-.||.+. ..-|.+|... ...|.++|.
T Consensus 260 -dPs---~~sW~e-ypLPgs~arpys~rVD~-------~grVW~sea~agai~rfdpe-------------ta~ftv~p~ 314 (353)
T COG4257 260 -DPS---VTSWIE-YPLPGSKARPYSMRVDR-------HGRVWLSEADAGAIGRFDPE-------------TARFTVLPI 314 (353)
T ss_pred -Ccc---ccccee-eeCCCCCCCcceeeecc-------CCcEEeeccccCceeecCcc-------------cceEEEecC
Confidence 221 233444 67776322234555542 23444332 3445555431 234678888
Q ss_pred CcCCCcceeeeccCCCceEEEeecCceEE
Q 002318 223 EILNSELHFFIKQRRAVHFAWLSGAGIYH 251 (936)
Q Consensus 223 ~~~~s~~~~~~~~~~~~~faW~t~~gi~~ 251 (936)
+.+++..... +...--.|.+..|+..
T Consensus 315 pr~n~gn~ql---~gr~ge~W~~e~gvd~ 340 (353)
T COG4257 315 PRPNSGNIQL---DGRPGELWFTEAGVDA 340 (353)
T ss_pred CCCCCCceec---cCCCCceeecccCcce
Confidence 7777653333 2234567888888754
No 373
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=42.44 E-value=1.2e+02 Score=34.52 Aligned_cols=88 Identities=16% Similarity=0.232 Sum_probs=60.7
Q ss_pred CceeEEEEeCC--EEEEEecCCeEEEEeC-CCCCceeeEcCCCCCCccceeEEEeCC-CCCeEEEEeecCCCccEEEEec
Q 002318 22 GVITCMSAGND--VIVLGTSKGWLIRHDF-GAGDSYDIDLSAGRPGEQSIHKVFVDP-GGSHCIATIVGSGGAETFYTHA 97 (936)
Q Consensus 22 ~~i~~l~v~~n--~l~l~~~~g~l~ridl-~~~~~~~~~l~~~~~~~~~i~~i~lDp-~G~hlli~~~~~~~g~~~Y~~~ 97 (936)
+.|..++.+.| .|+-|-.++++-.||| ....+..|+-+ ..-|+++-.+| .|..|+.|+- ++..+.|.+.
T Consensus 346 k~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r~~ly~ipAH-----~nlVS~Vk~~p~~g~fL~Tasy--D~t~kiWs~~ 418 (459)
T KOG0272|consen 346 KEILSVAFSPNGYHLATGSSDNTCKVWDLRMRSELYTIPAH-----SNLVSQVKYSPQEGYFLVTASY--DNTVKIWSTR 418 (459)
T ss_pred cceeeEeECCCceEEeecCCCCcEEEeeecccccceecccc-----cchhhheEecccCCeEEEEccc--CcceeeecCC
Confidence 34778888877 4555667789999999 66666666665 35789999999 5655555543 3456678888
Q ss_pred CCCCceeccCCCCc--eEEEEEec
Q 002318 98 KWSKPRVLSKLKGL--VVNAVAWN 119 (936)
Q Consensus 98 ~~~k~k~L~klkg~--~I~sVaw~ 119 (936)
.+.+.|.|. || .|-|+...
T Consensus 419 ~~~~~ksLa---GHe~kV~s~Dis 439 (459)
T KOG0272|consen 419 TWSPLKSLA---GHEGKVISLDIS 439 (459)
T ss_pred Ccccchhhc---CCccceEEEEec
Confidence 887776664 55 45566655
No 374
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=42.34 E-value=2.2e+02 Score=32.97 Aligned_cols=82 Identities=15% Similarity=0.136 Sum_probs=50.7
Q ss_pred EEEeCCEEEEEecCCeEEEEeCCCCCceeeEcCCCCCCccceeEEEeCCCCCeEEEEeecCCCccEEEEecCCCCceecc
Q 002318 27 MSAGNDVIVLGTSKGWLIRHDFGAGDSYDIDLSAGRPGEQSIHKVFVDPGGSHCIATIVGSGGAETFYTHAKWSKPRVLS 106 (936)
Q Consensus 27 l~v~~n~l~l~~~~g~l~ridl~~~~~~~~~l~~~~~~~~~i~~i~lDp~G~hlli~~~~~~~g~~~Y~~~~~~k~k~L~ 106 (936)
+.......++...++.++.+|-+.-+ . ++ +.+++.+|.+.|+|.++.+.++ +|..+.+.....+.-.--
T Consensus 186 l~~~~~~~i~~~~g~~i~~i~~~~~~--~--i~----~~~~i~~iavSpng~~iAl~t~---~g~l~v~ssDf~~~~~e~ 254 (410)
T PF04841_consen 186 LSSDRVVEILLANGETIYIIDENSFK--Q--ID----SDGPIIKIAVSPNGKFIALFTD---SGNLWVVSSDFSEKLCEF 254 (410)
T ss_pred eecCcceEEEEecCCEEEEEEccccc--c--cc----CCCCeEEEEECCCCCEEEEEEC---CCCEEEEECcccceeEEe
Confidence 33444445555566677777762211 1 22 2468999999999999999998 898877766554321111
Q ss_pred CC-CCceEEEEEec
Q 002318 107 KL-KGLVVNAVAWN 119 (936)
Q Consensus 107 kl-kg~~I~sVaw~ 119 (936)
+. .-...+.++|.
T Consensus 255 ~~~~~~~p~~~~WC 268 (410)
T PF04841_consen 255 DTDSKSPPKQMAWC 268 (410)
T ss_pred ecCcCCCCcEEEEE
Confidence 11 11356788898
No 375
>PRK12370 invasion protein regulator; Provisional
Probab=42.31 E-value=2.4e+02 Score=34.06 Aligned_cols=18 Identities=11% Similarity=0.185 Sum_probs=10.1
Q ss_pred HHHHhcccHHHHHHHHhC
Q 002318 542 HHYIQQGEAKKALQMLRK 559 (936)
Q Consensus 542 ~~yi~~~~~~~AL~~L~~ 559 (936)
..|...|++++|...+.+
T Consensus 449 ~~l~~~G~~~eA~~~~~~ 466 (553)
T PRK12370 449 MFLSLKGKHELARKLTKE 466 (553)
T ss_pred HHHHhCCCHHHHHHHHHH
Confidence 444555666666665544
No 376
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=41.97 E-value=2.5e+02 Score=30.19 Aligned_cols=103 Identities=14% Similarity=0.167 Sum_probs=67.8
Q ss_pred ccceeEEEeCCCCCeEEEEeecCCCccEEEEecCCCCceeccCCCCc--eEEEEEecCCCCCCCCcceEEEEcCCCcEEE
Q 002318 65 EQSIHKVFVDPGGSHCIATIVGSGGAETFYTHAKWSKPRVLSKLKGL--VVNAVAWNRQQITEASTKEIILGTDTGQLHE 142 (936)
Q Consensus 65 ~~~i~~i~lDp~G~hlli~~~~~~~g~~~Y~~~~~~k~k~L~klkg~--~I~sVaw~~~~~~~~st~~iLiGt~~G~i~e 142 (936)
.-+|++|--...|..|+.|..- ....++|.+... .|...+|| .|=|+.-+. +|..++.|..+-.+-.
T Consensus 10 ERplTqiKyN~eGDLlFscaKD-~~~~vw~s~nGe----rlGty~GHtGavW~~Did~------~s~~liTGSAD~t~kL 78 (327)
T KOG0643|consen 10 ERPLTQIKYNREGDLLFSCAKD-STPTVWYSLNGE----RLGTYDGHTGAVWCCDIDW------DSKHLITGSADQTAKL 78 (327)
T ss_pred ccccceEEecCCCcEEEEecCC-CCceEEEecCCc----eeeeecCCCceEEEEEecC------CcceeeeccccceeEE
Confidence 3578999999999999999871 134667775443 46666776 455555552 3568999998876655
Q ss_pred EEEecCCcccceeeEEeeeCCCCCceeeEEEEeeccCCCceEEEEEECCC
Q 002318 143 MAVDEKDKREKYIKLLFELNELPEAFMGLQMETASLSNGTRYYVMAVTPT 192 (936)
Q Consensus 143 ~~i~~~~~~~~~~k~v~~l~~~~~~I~gi~~~~~~~~~~~~~~i~ast~~ 192 (936)
-.++.+ |+++.++- +.||.++.+.. + +-+++++|..
T Consensus 79 WDv~tG-------k~la~~k~-~~~Vk~~~F~~----~--gn~~l~~tD~ 114 (327)
T KOG0643|consen 79 WDVETG-------KQLATWKT-NSPVKRVDFSF----G--GNLILASTDK 114 (327)
T ss_pred EEcCCC-------cEEEEeec-CCeeEEEeecc----C--CcEEEEEehh
Confidence 544443 56666653 47899999874 2 2344556644
No 377
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=41.71 E-value=1.5e+02 Score=36.31 Aligned_cols=128 Identities=11% Similarity=0.071 Sum_probs=81.8
Q ss_pred eCCEEEEEecCCeEEEEeC-CCCCce---eeEcCCCCCCccceeEEEeCCCCCeEEEEeecCCCccEEEEecCCCCceec
Q 002318 30 GNDVIVLGTSKGWLIRHDF-GAGDSY---DIDLSAGRPGEQSIHKVFVDPGGSHCIATIVGSGGAETFYTHAKWSKPRVL 105 (936)
Q Consensus 30 ~~n~l~l~~~~g~l~ridl-~~~~~~---~~~l~~~~~~~~~i~~i~lDp~G~hlli~~~~~~~g~~~Y~~~~~~k~k~L 105 (936)
.+|.|+.+-.+|.|..||| .+.+-. .+.=| .-.++++-..++--|++|+... ||.+=-+.....+-+..
T Consensus 99 ~~NlIAT~s~nG~i~vWdlnk~~rnk~l~~f~EH-----~Rs~~~ldfh~tep~iliSGSQ--Dg~vK~~DlR~~~S~~t 171 (839)
T KOG0269|consen 99 YSNLIATCSTNGVISVWDLNKSIRNKLLTVFNEH-----ERSANKLDFHSTEPNILISGSQ--DGTVKCWDLRSKKSKST 171 (839)
T ss_pred hhhhheeecCCCcEEEEecCccccchhhhHhhhh-----ccceeeeeeccCCccEEEecCC--CceEEEEeeeccccccc
Confidence 4566677778999999999 543211 11112 3578999999998898888542 67665666555544444
Q ss_pred cCCCCceEEEEEecCCCCCCCCcceEEEEcCCCcEEEEEEecCCcccceeeEEeeeCCCCCceeeEEEEe
Q 002318 106 SKLKGLVVNAVAWNRQQITEASTKEIILGTDTGQLHEMAVDEKDKREKYIKLLFELNELPEAFMGLQMET 175 (936)
Q Consensus 106 ~klkg~~I~sVaw~~~~~~~~st~~iLiGt~~G~i~e~~i~~~~~~~~~~k~v~~l~~~~~~I~gi~~~~ 175 (936)
..----.|+-|+|.+... -.|.-+...|.+-.-.|- .++++.+++ .-.. |||..+-|..
T Consensus 172 ~~~nSESiRDV~fsp~~~-----~~F~s~~dsG~lqlWDlR---qp~r~~~k~-~AH~--GpV~c~nwhP 230 (839)
T KOG0269|consen 172 FRSNSESIRDVKFSPGYG-----NKFASIHDSGYLQLWDLR---QPDRCEKKL-TAHN--GPVLCLNWHP 230 (839)
T ss_pred ccccchhhhceeeccCCC-----ceEEEecCCceEEEeecc---CchhHHHHh-hccc--CceEEEeecC
Confidence 321224799999995432 267777778866555443 234555553 3333 7899999973
No 378
>KOG4328 consensus WD40 protein [Function unknown]
Probab=41.57 E-value=84 Score=35.93 Aligned_cols=102 Identities=15% Similarity=0.185 Sum_probs=66.9
Q ss_pred eeEEEE--eCCEEEEEecCCeEEEEeC--CCCCceeeEcCCCCCCccceeEEEeCCCCCeEEEEeecCCCccEEEEecCC
Q 002318 24 ITCMSA--GNDVIVLGTSKGWLIRHDF--GAGDSYDIDLSAGRPGEQSIHKVFVDPGGSHCIATIVGSGGAETFYTHAKW 99 (936)
Q Consensus 24 i~~l~v--~~n~l~l~~~~g~l~ridl--~~~~~~~~~l~~~~~~~~~i~~i~lDp~G~hlli~~~~~~~g~~~Y~~~~~ 99 (936)
++.+++ .+..+++|...|....||+ +.++...+.++ +.+|..|-+.|.-.|.+++.. -++..--+....
T Consensus 282 fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~~~~~lh-----~kKI~sv~~NP~~p~~laT~s--~D~T~kIWD~R~ 354 (498)
T KOG4328|consen 282 FSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSEYENLRLH-----KKKITSVALNPVCPWFLATAS--LDQTAKIWDLRQ 354 (498)
T ss_pred eeeccccCCCccEEEeecccceEEEEeecCCccchhhhhh-----hcccceeecCCCCchheeecc--cCcceeeeehhh
Confidence 455544 4568899999999999999 55667777777 359999999999888777643 145543444322
Q ss_pred CCce---eccCC-CCceEEEEEecCCCCCCCCcceEEEEcCCC
Q 002318 100 SKPR---VLSKL-KGLVVNAVAWNRQQITEASTKEIILGTDTG 138 (936)
Q Consensus 100 ~k~k---~L~kl-kg~~I~sVaw~~~~~~~~st~~iLiGt~~G 138 (936)
-..| .|+.+ ..+.|.|+.|.| ++|.+|.-+.+-
T Consensus 355 l~~K~sp~lst~~HrrsV~sAyFSP------s~gtl~TT~~D~ 391 (498)
T KOG4328|consen 355 LRGKASPFLSTLPHRRSVNSAYFSP------SGGTLLTTCQDN 391 (498)
T ss_pred hcCCCCcceecccccceeeeeEEcC------CCCceEeeccCC
Confidence 2111 24433 346899999984 355655544443
No 379
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=41.49 E-value=4.5e+02 Score=31.15 Aligned_cols=71 Identities=6% Similarity=-0.004 Sum_probs=50.8
Q ss_pred ceeEEEEeCC--EEEEEecCCeEEEEeCCCCCceeeEcCCC-------CCCccceeEEEeCCCCCeEEEEeecCCCccEE
Q 002318 23 VITCMSAGND--VIVLGTSKGWLIRHDFGAGDSYDIDLSAG-------RPGEQSIHKVFVDPGGSHCIATIVGSGGAETF 93 (936)
Q Consensus 23 ~i~~l~v~~n--~l~l~~~~g~l~ridl~~~~~~~~~l~~~-------~~~~~~i~~i~lDp~G~hlli~~~~~~~g~~~ 93 (936)
.|-|++|..| ..|=|..+|+|-.|++- .+.+..+...+ .+-.+.|-.+++.++-..|++|+. +|.++
T Consensus 346 PVl~v~v~~n~~~~ysgg~Dg~I~~w~~p-~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~~Llscs~---DgTvr 421 (577)
T KOG0642|consen 346 PVLCVVVPSNGEHCYSGGIDGTIRCWNLP-PNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKDRLLSCSS---DGTVR 421 (577)
T ss_pred ceEEEEecCCceEEEeeccCceeeeeccC-CCCCcccccCcchhccceeccccceeeeeecccccceeeecC---CceEE
Confidence 4888888877 67889999999999882 22222222211 111467888899999999999988 89997
Q ss_pred EEec
Q 002318 94 YTHA 97 (936)
Q Consensus 94 Y~~~ 97 (936)
-+..
T Consensus 422 ~w~~ 425 (577)
T KOG0642|consen 422 LWEP 425 (577)
T ss_pred eecc
Confidence 6654
No 380
>PF00412 LIM: LIM domain; InterPro: IPR001781 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents LIM-type zinc finger (Znf) domains. LIM domains coordinate one or more zinc atoms, and are named after the three proteins (LIN-11, Isl1 and MEC-3) in which they were first found. They consist of two zinc-binding motifs that resemble GATA-like Znf's, however the residues holding the zinc atom(s) are variable, involving Cys, His, Asp or Glu residues. LIM domains are involved in proteins with differing functions, including gene expression, and cytoskeleton organisation and development [, ]. Protein containing LIM Znf domains include: Caenorhabditis elegans mec-3; a protein required for the differentiation of the set of six touch receptor neurons in this nematode. C. elegans. lin-11; a protein required for the asymmetric division of vulval blast cells. Vertebrate insulin gene enhancer binding protein isl-1. Isl-1 binds to one of the two cis-acting protein-binding domains of the insulin gene. Vertebrate homeobox proteins lim-1, lim-2 (lim-5) and lim3. Vertebrate lmx-1, which acts as a transcriptional activator by binding to the FLAT element; a beta-cell-specific transcriptional enhancer found in the insulin gene. Mammalian LH-2, a transcriptional regulatory protein involved in the control of cell differentiation in developing lymphoid and neural cell types. Drosophila melanogaster (Fruit fly) protein apterous, required for the normal development of the wing and halter imaginal discs. Vertebrate protein kinases LIMK-1 and LIMK-2. Mammalian rhombotins. Rhombotin 1 (RBTN1 or TTG-1) and rhombotin-2 (RBTN2 or TTG-2) are proteins of about 160 amino acids whose genes are disrupted by chromosomal translocations in T-cell leukemia. Mammalian and avian cysteine-rich protein (CRP), a 192 amino-acid protein of unknown function. Seems to interact with zyxin. Mammalian cysteine-rich intestinal protein (CRIP), a small protein which seems to have a role in zinc absorption and may function as an intracellular zinc transport protein. Vertebrate paxillin, a cytoskeletal focal adhesion protein. Mus musculus (Mouse) testin which should not be confused with rat testin which is a thiol protease homologue (see IPR000169 from INTERPRO). Helianthus annuus (Common sunflower) pollen specific protein SF3. Chicken zyxin. Zyxin is a low-abundance adhesion plaque protein which has been shown to interact with CRP. Yeast protein LRG1 which is involved in sporulation []. Saccharomyces cerevisiae (Baker's yeast) rho-type GTPase activating protein RGA1/DBM1. C. elegans homeobox protein ceh-14. C. elegans homeobox protein unc-97. S. cerevisiae hypothetical protein YKR090w. C. elegans hypothetical proteins C28H8.6. These proteins generally contain two tandem copies of the LIM domain in their N-terminal section. Zyxin and paxillin are exceptions in that they contain respectively three and four LIM domains at their C-terminal extremity. In apterous, isl-1, LH-2, lin-11, lim-1 to lim-3, lmx-1 and ceh-14 and mec-3 there is a homeobox domain some 50 to 95 amino acids after the LIM domains. LIM domains contain seven conserved cysteine residues and a histidine. The arrangement followed by these conserved residues is: C-x(2)-C-x(16,23)-H-x(2)-[CH]-x(2)-C-x(2)-C-x(16,21)-C-x(2,3)-[CHD] LIM domains bind two zinc ions []. LIM does not bind DNA, rather it seems to act as an interface for protein-protein interaction. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 2CO8_A 2EGQ_A 2CUR_A 3IXE_B 1CTL_A 1B8T_A 1X62_A 2DFY_C 1IML_A 2CUQ_A ....
Probab=41.32 E-value=5.7 Score=31.66 Aligned_cols=28 Identities=21% Similarity=0.591 Sum_probs=20.3
Q ss_pred ccccchhhhhcccccccccccCCCCCCCCEEEEcCCChhHHHhHH
Q 002318 836 CGVCRRKILVAGRDYRMARGYASVGPMAPFYVFPCGHAFHAQCLI 880 (936)
Q Consensus 836 C~~C~k~L~~~~~~~~~~~~~~~~~~~~~fvvFpCgH~fH~~CL~ 880 (936)
|..|+++|.. . ..++-.-|..||.+|+.
T Consensus 1 C~~C~~~I~~-----~------------~~~~~~~~~~~H~~Cf~ 28 (58)
T PF00412_consen 1 CARCGKPIYG-----T------------EIVIKAMGKFWHPECFK 28 (58)
T ss_dssp BTTTSSBESS-----S------------SEEEEETTEEEETTTSB
T ss_pred CCCCCCCccC-----c------------EEEEEeCCcEEEccccc
Confidence 7889998887 3 44444677788888864
No 381
>TIGR01061 parC_Gpos DNA topoisomerase IV, A subunit, Gram-positive. Operationally, topoisomerase IV is a type II topoisomerase required for the decatenation of chromosome segregation. Not every bacterium has both a topo II and a topo IV. The topo IV families of the Gram-positive bacteria and the Gram-negative bacteria appear not to represent a single clade among the type II topoisomerases, and are represented by separate models for this reason.
Probab=41.16 E-value=8.3e+02 Score=30.71 Aligned_cols=159 Identities=10% Similarity=0.100 Sum_probs=86.7
Q ss_pred EEEEeCCEEEEEecCCeEEEEeC-CCCCceeeEcCCCCCCccceeEEEeCCCCCeEEEEeecCCCccEEEEecC------
Q 002318 26 CMSAGNDVIVLGTSKGWLIRHDF-GAGDSYDIDLSAGRPGEQSIHKVFVDPGGSHCIATIVGSGGAETFYTHAK------ 98 (936)
Q Consensus 26 ~l~v~~n~l~l~~~~g~l~ridl-~~~~~~~~~l~~~~~~~~~i~~i~lDp~G~hlli~~~~~~~g~~~Y~~~~------ 98 (936)
.+...++++++.+.+|.|-|..+ .-......-+... .++.+..++.-.+..++++-|+ .|..|.+...
T Consensus 492 dli~~E~~lV~lTk~G~IKrt~l~~f~~~r~~ai~Lk--e~Delv~v~~~~~~d~IllfT~---~Gkv~r~~~~eIp~~g 566 (738)
T TIGR01061 492 ELIENEDYYVLITKAGYIKRTSNRSFASSKYTDFGSK--DDDILFAQTIANTTDQILIFTS---LGNIINIPVHKLADIR 566 (738)
T ss_pred hcccccceEEEEccCCEEEEeehhhhhhhcccccCCC--CCCEEEEEEEecCCCEEEEEeC---CCcEEEEEHHHCcCCC
Confidence 44567889999999999999988 2221111111111 2356667777666777888888 7988776531
Q ss_pred -CCCce---eccCC-CCceEEEEEecCCCCCCCCcceEEEEcCCCcEEEEEEecCC--cccceeeEEeeeCCCCCceeeE
Q 002318 99 -WSKPR---VLSKL-KGLVVNAVAWNRQQITEASTKEIILGTDTGQLHEMAVDEKD--KREKYIKLLFELNELPEAFMGL 171 (936)
Q Consensus 99 -~~k~k---~L~kl-kg~~I~sVaw~~~~~~~~st~~iLiGt~~G~i~e~~i~~~~--~~~~~~k~v~~l~~~~~~I~gi 171 (936)
..+-. .+-+| .|-.|.++....... + ....+++.|++|.+-.+.+..-. +.-+.. .++.+.+. ..+-++
T Consensus 567 r~a~Gv~Ivk~i~L~~~D~Iv~~~~v~~~~-~-~~~~ll~vT~~G~~KRt~l~e~~~~r~~kGv-~~ikLk~~-d~lV~a 642 (738)
T TIGR01061 567 WKDLGEHLSNKITFDENETIVFVGTMNEFD-V-DQPILVLASKLGMVKRIELTELNIKRNSKAT-LCIKLKDK-DHLISA 642 (738)
T ss_pred CCCCCcChhhcccCCCCCeEEEEEEecccc-C-CCcEEEEEecCCeEEEeEHHHhccccCCCce-EEEeccCC-CcEEEE
Confidence 11211 12223 234555555432210 0 11369999999988887764211 101112 23456543 234333
Q ss_pred EEEeeccCCCceEEEEEECCCeEEEEe
Q 002318 172 QMETASLSNGTRYYVMAVTPTRLYSFT 198 (936)
Q Consensus 172 ~~~~~~~~~~~~~~i~ast~~rly~f~ 198 (936)
... .+ ...++++|.......|.
T Consensus 643 ~~v----~~-~d~IlliT~~G~~iRf~ 664 (738)
T TIGR01061 643 FLQ----QK-DKLICLVSDLGYALVFH 664 (738)
T ss_pred EEe----CC-CCEEEEEECCCeEEEEE
Confidence 332 12 24566777777777775
No 382
>PF04363 DUF496: Protein of unknown function (DUF496); InterPro: IPR007458 Members of this family are uncharacterised proteins.
Probab=41.13 E-value=69 Score=27.91 Aligned_cols=36 Identities=14% Similarity=0.356 Sum_probs=29.3
Q ss_pred cccccCcCCCCcchhHHHHHHHHHHHHHHHHHHHHH
Q 002318 768 IEDILPFFPDFALIDDFKEAICSSLDDYNKQIEQLK 803 (936)
Q Consensus 768 i~diL~~~p~~~~I~~~Kd~I~~~L~~y~~~i~~l~ 803 (936)
+..+..++.+.+++++++..|..+-.+|...+...-
T Consensus 38 LdNL~~YI~~~Ms~edi~~II~nMr~DYEdRVDDyi 73 (95)
T PF04363_consen 38 LDNLSDYIKPDMSIEDIRAIIENMRSDYEDRVDDYI 73 (95)
T ss_pred HHHHHHHccCCCCHHHHHHHHHHHHhHHHHhHHHHH
Confidence 445677788899999999999999999988776543
No 383
>PF04564 U-box: U-box domain; InterPro: IPR003613 Quality control of intracellular proteins is essential for cellular homeostasis. Molecular chaperones recognise and contribute to the refolding of misfolded or unfolded proteins, whereas the ubiquitin-proteasome system mediates the degradation of such abnormal proteins. Ubiquitin-protein ligases (E3s) determine the substrate specificity for ubiquitylation and have been classified into HECT and RING-finger families. More recently, however, U-box proteins, which contain a domain (the U box) of about 70 amino acids that is conserved from yeast to humans, have been identified as a new type of E3 []. Members of the U-box family of proteins constitute a class of ubiquitin-protein ligases (E3s) distinct from the HECT-type and RING finger-containing E3 families []. Using yeast two-hybrid technology, all mammalian U-box proteins have been reported to interact with molecular chaperones or co-chaperones, including Hsp90, Hsp70, DnaJc7, EKN1, CRN, and VCP. This suggests that the function of U box-type E3s is to mediate the degradation of unfolded or misfolded proteins in conjunction with molecular chaperones as receptors that recognise such abnormal proteins [, ]. Unlike the RING finger domain, IPR001841 from INTERPRO, that is stabilised by Zn2+ ions coordinated by the cysteines and a histidine, the U-box scaffold is probably stabilised by a system of salt-bridges and hydrogen bonds. The charged and polar residues that participate in this network of bonds are more strongly conserved in the U-box proteins than in classic RING fingers, which supports their role in maintaining the stability of the U box. Thus, the U box appears to have evolved from a RING finger domain by appropriation of a new set of residues required to stabilise its structure, concomitant with the loss of the original, metal-chelating residues [].; GO: 0004842 ubiquitin-protein ligase activity, 0016567 protein ubiquitination, 0000151 ubiquitin ligase complex; PDB: 1T1H_A 2C2L_D 2C2V_V 1WGM_A 2KR4_A 3L1Z_B 3L1X_A 2KRE_A 3M63_A 2QIZ_A ....
Probab=41.01 E-value=14 Score=31.34 Aligned_cols=35 Identities=17% Similarity=0.410 Sum_probs=26.7
Q ss_pred ccccccccchhhhhcccccccccccCCCCCCCCEEEEcCCChhHHHhHHHHHhh
Q 002318 832 RDEDCGVCRRKILVAGRDYRMARGYASVGPMAPFYVFPCGHAFHAQCLIAHVTQ 885 (936)
Q Consensus 832 ~~~~C~~C~k~L~~~~~~~~~~~~~~~~~~~~~fvvFpCgH~fH~~CL~~~~~~ 885 (936)
+.-.|.+|+..+.. | |+-||||+|=+.|+.+.+..
T Consensus 3 ~~f~CpIt~~lM~d------------------P-Vi~~~G~tyer~~I~~~l~~ 37 (73)
T PF04564_consen 3 DEFLCPITGELMRD------------------P-VILPSGHTYERSAIERWLEQ 37 (73)
T ss_dssp GGGB-TTTSSB-SS------------------E-EEETTSEEEEHHHHHHHHCT
T ss_pred cccCCcCcCcHhhC------------------c-eeCCcCCEEcHHHHHHHHHc
Confidence 34579999987766 4 45699999999999998876
No 384
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=40.88 E-value=4.1e+02 Score=27.14 Aligned_cols=46 Identities=22% Similarity=0.278 Sum_probs=31.0
Q ss_pred HHchhhHHHHHHhcCC-------hhhHHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 002318 371 YLDMKEYAAALANCRD-------PLQRDQVYLVQAEAAFATKDFHRAASFYAK 416 (936)
Q Consensus 371 ll~~~~f~~Al~~~~~-------~~~~~~I~~~~~~~L~~~g~y~~Aa~~y~~ 416 (936)
++++|+|++|++..+. ...........|+.++..|+|.+|+..|.+
T Consensus 15 ~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~ 67 (203)
T PF13525_consen 15 ALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYER 67 (203)
T ss_dssp HHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 6777888888877542 224456677778888888888888776654
No 385
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=40.79 E-value=6.7e+02 Score=30.80 Aligned_cols=166 Identities=11% Similarity=0.086 Sum_probs=95.7
Q ss_pred ceehhHHHHHhhcCCCceeEEEEeCC--EEEEEecCCeEEEEeCCCCCceeeEcCCC-CCCccceeEEEeCCCCCeEEEE
Q 002318 7 VFQVDVLERYAAKGRGVITCMSAGND--VIVLGTSKGWLIRHDFGAGDSYDIDLSAG-RPGEQSIHKVFVDPGGSHCIAT 83 (936)
Q Consensus 7 ~f~~~~~~~~~~~~~~~i~~l~v~~n--~l~l~~~~g~l~ridl~~~~~~~~~l~~~-~~~~~~i~~i~lDp~G~hlli~ 83 (936)
.|+++....++-.|- . ++++.| +|+-+..+ .|..+|+.+..+. +|.. +.....|+.+-++|.+.+|+..
T Consensus 9 ~ya~ers~epiYtGG-~---~~~s~nG~~L~t~~~d-~Vi~idv~t~~~~---l~s~~~ed~d~ita~~l~~d~~~L~~a 80 (775)
T KOG0319|consen 9 SYALERSLEPIYTGG-P---VAWSSNGQHLYTACGD-RVIIIDVATGSIA---LPSGSNEDEDEITALALTPDEEVLVTA 80 (775)
T ss_pred hhhhhhcccceecCC-c---eeECCCCCEEEEecCc-eEEEEEccCCcee---cccCCccchhhhheeeecCCccEEEEe
Confidence 355555444444442 2 455544 44443333 6888899555443 4433 1234789999999999999998
Q ss_pred eecCCCccEEEEecCCCCceeccCC-CCceEEEEEecCCCCCCCCcceEEEEcCCCcEEEEEEecCCcccceeeEEeeeC
Q 002318 84 IVGSGGAETFYTHAKWSKPRVLSKL-KGLVVNAVAWNRQQITEASTKEIILGTDTGQLHEMAVDEKDKREKYIKLLFELN 162 (936)
Q Consensus 84 ~~~~~~g~~~Y~~~~~~k~k~L~kl-kg~~I~sVaw~~~~~~~~st~~iLiGt~~G~i~e~~i~~~~~~~~~~k~v~~l~ 162 (936)
.. ++..--++.+.-+.-..-|- .--+|--+++++. .+-.-.|+.+|.+---.+... |+.. .+.
T Consensus 81 ~r---s~llrv~~L~tgk~irswKa~He~Pvi~ma~~~~------g~LlAtggaD~~v~VWdi~~~-----~~th--~fk 144 (775)
T KOG0319|consen 81 SR---SQLLRVWSLPTGKLIRSWKAIHEAPVITMAFDPT------GTLLATGGADGRVKVWDIKNG-----YCTH--SFK 144 (775)
T ss_pred ec---cceEEEEEcccchHhHhHhhccCCCeEEEEEcCC------CceEEeccccceEEEEEeeCC-----EEEE--Eec
Confidence 88 45444444444332221111 1247777888832 134555778887766655443 4544 455
Q ss_pred CCCCceeeEEEEeeccCCCceEEEEE-ECCCeEEEEecC
Q 002318 163 ELPEAFMGLQMETASLSNGTRYYVMA-VTPTRLYSFTGF 200 (936)
Q Consensus 163 ~~~~~I~gi~~~~~~~~~~~~~~i~a-st~~rly~f~~~ 200 (936)
+-||+|..+.+...+ .+.++.+ .+...++.|...
T Consensus 145 G~gGvVssl~F~~~~----~~~lL~sg~~D~~v~vwnl~ 179 (775)
T KOG0319|consen 145 GHGGVVSSLLFHPHW----NRWLLASGATDGTVRVWNLN 179 (775)
T ss_pred CCCceEEEEEeCCcc----chhheeecCCCceEEEEEcc
Confidence 556889999987422 2333332 246778878764
No 386
>KOG4367 consensus Predicted Zn-finger protein [Function unknown]
Probab=40.63 E-value=25 Score=39.32 Aligned_cols=40 Identities=20% Similarity=0.465 Sum_probs=30.0
Q ss_pred cccccccccchhhhhcccccccccccCCCCCCCCEEEEcCCChhHHHhHHHHHhhcCCc
Q 002318 831 DRDEDCGVCRRKILVAGRDYRMARGYASVGPMAPFYVFPCGHAFHAQCLIAHVTQCTNE 889 (936)
Q Consensus 831 ~~~~~C~~C~k~L~~~~~~~~~~~~~~~~~~~~~fvvFpCgH~fH~~CL~~~~~~~~~~ 889 (936)
+.+-+|.+|+.-... =++.||||...+-|..+.......+
T Consensus 2 eeelkc~vc~~f~~e-------------------piil~c~h~lc~~ca~~~~~~tp~~ 41 (699)
T KOG4367|consen 2 EEELKCPVCGSFYRE-------------------PIILPCSHNLCQACARNILVQTPES 41 (699)
T ss_pred cccccCceehhhccC-------------------ceEeecccHHHHHHHHhhcccCCCC
Confidence 456789999975544 3678999999999999776554443
No 387
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=39.94 E-value=96 Score=36.04 Aligned_cols=23 Identities=22% Similarity=0.466 Sum_probs=17.3
Q ss_pred HHHHHHHHHhcccHHHHHHHHhC
Q 002318 537 HEIVVHHYIQQGEAKKALQMLRK 559 (936)
Q Consensus 537 y~~ll~~yi~~~~~~~AL~~L~~ 559 (936)
|+.+..+-+++|+.++|+++..+
T Consensus 540 ~~tlaq~~lQ~~~i~eAielFEk 562 (606)
T KOG0547|consen 540 YETLAQFELQRGKIDEAIELFEK 562 (606)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHH
Confidence 45577777888888888887765
No 388
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=39.65 E-value=4.2e+02 Score=33.68 Aligned_cols=132 Identities=11% Similarity=0.068 Sum_probs=81.5
Q ss_pred eeEEEEe--CCEEEEEecCCeEEEEeC-CCCCceeeEcCCCCCCccceeEEEeCCCCCeEEEEeecCCCccEEEEe-cCC
Q 002318 24 ITCMSAG--NDVIVLGTSKGWLIRHDF-GAGDSYDIDLSAGRPGEQSIHKVFVDPGGSHCIATIVGSGGAETFYTH-AKW 99 (936)
Q Consensus 24 i~~l~v~--~n~l~l~~~~g~l~ridl-~~~~~~~~~l~~~~~~~~~i~~i~lDp~G~hlli~~~~~~~g~~~Y~~-~~~ 99 (936)
|..++-+ ..+++-+--.++|+.+|. .-..+..+.-+ .+.|-.+-.||.|.++...++ |...-++. ..+
T Consensus 132 V~Dv~Wsp~~~~lvS~s~DnsViiwn~~tF~~~~vl~~H-----~s~VKGvs~DP~Gky~ASqsd---Drtikvwrt~dw 203 (942)
T KOG0973|consen 132 VLDVNWSPDDSLLVSVSLDNSVIIWNAKTFELLKVLRGH-----QSLVKGVSWDPIGKYFASQSD---DRTLKVWRTSDW 203 (942)
T ss_pred cceeccCCCccEEEEecccceEEEEccccceeeeeeecc-----cccccceEECCccCeeeeecC---CceEEEEEcccc
Confidence 5556666 445666667789999999 44555555555 367889999999999999888 89888887 333
Q ss_pred CCceeccCCCC-----ceEEEEEecCCCCCCCCcceEEEEcC--CCcEEEEEEecCCcccceeeEEeeeCCCCCceeeEE
Q 002318 100 SKPRVLSKLKG-----LVVNAVAWNRQQITEASTKEIILGTD--TGQLHEMAVDEKDKREKYIKLLFELNELPEAFMGLQ 172 (936)
Q Consensus 100 ~k~k~L~klkg-----~~I~sVaw~~~~~~~~st~~iLiGt~--~G~i~e~~i~~~~~~~~~~k~v~~l~~~~~~I~gi~ 172 (936)
.=.|.+.+..+ -.+.-..|.|+ |.+|.-.. +|-..-+.|-.++ .||.=+.|-+-.+|++.+.
T Consensus 204 ~i~k~It~pf~~~~~~T~f~RlSWSPD-------G~~las~nA~n~~~~~~~IieR~----tWk~~~~LvGH~~p~evvr 272 (942)
T KOG0973|consen 204 GIEKSITKPFEESPLTTFFLRLSWSPD-------GHHLASPNAVNGGKSTIAIIERG----TWKVDKDLVGHSAPVEVVR 272 (942)
T ss_pred eeeEeeccchhhCCCcceeeecccCCC-------cCeecchhhccCCcceeEEEecC----CceeeeeeecCCCceEEEE
Confidence 33445555433 35677889854 35555322 2334444443332 2443334433235677777
Q ss_pred EE
Q 002318 173 ME 174 (936)
Q Consensus 173 ~~ 174 (936)
+.
T Consensus 273 Fn 274 (942)
T KOG0973|consen 273 FN 274 (942)
T ss_pred eC
Confidence 74
No 389
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=39.54 E-value=45 Score=23.66 Aligned_cols=23 Identities=13% Similarity=0.218 Sum_probs=18.6
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHh
Q 002318 395 LVQAEAAFATKDFHRAASFYAKI 417 (936)
Q Consensus 395 ~~~~~~L~~~g~y~~Aa~~y~~~ 417 (936)
...|.-+...|+|++|+.+|.+.
T Consensus 3 ~~Lg~~~~~~g~~~~Ai~~y~~a 25 (36)
T PF13176_consen 3 NNLGRIYRQQGDYEKAIEYYEQA 25 (36)
T ss_dssp HHHHHHHHHCT-HHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHH
Confidence 35688889999999999999884
No 390
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=39.36 E-value=31 Score=24.50 Aligned_cols=22 Identities=27% Similarity=0.394 Sum_probs=17.1
Q ss_pred HHHHHHHHhcccHHHHHHHHhC
Q 002318 538 EIVVHHYIQQGEAKKALQMLRK 559 (936)
Q Consensus 538 ~~ll~~yi~~~~~~~AL~~L~~ 559 (936)
..+...|...|+|++|++++.+
T Consensus 3 ~~Lg~~~~~~g~~~~Ai~~y~~ 24 (36)
T PF13176_consen 3 NNLGRIYRQQGDYEKAIEYYEQ 24 (36)
T ss_dssp HHHHHHHHHCT-HHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHH
Confidence 4577889999999999998765
No 391
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=39.35 E-value=6e+02 Score=28.56 Aligned_cols=152 Identities=7% Similarity=0.090 Sum_probs=90.1
Q ss_pred CceeEEEEe--CCEEEEEecCCeEEEEeC-CCCCceeeEcCCCCCCccceeEEEeCCCCCeEEEEeecCCCccEEEEecC
Q 002318 22 GVITCMSAG--NDVIVLGTSKGWLIRHDF-GAGDSYDIDLSAGRPGEQSIHKVFVDPGGSHCIATIVGSGGAETFYTHAK 98 (936)
Q Consensus 22 ~~i~~l~v~--~n~l~l~~~~g~l~ridl-~~~~~~~~~l~~~~~~~~~i~~i~lDp~G~hlli~~~~~~~g~~~Y~~~~ 98 (936)
+.+-+++.+ +|+.+-|-....=|.||+ +.+...++.=+ ..+|+.+.....|..|.-.-- +|.++.+-.+
T Consensus 65 ~svFavsl~P~~~l~aTGGgDD~AflW~~~~ge~~~eltgH-----KDSVt~~~FshdgtlLATGdm---sG~v~v~~~s 136 (399)
T KOG0296|consen 65 DSVFAVSLHPNNNLVATGGGDDLAFLWDISTGEFAGELTGH-----KDSVTCCSFSHDGTLLATGDM---SGKVLVFKVS 136 (399)
T ss_pred CceEEEEeCCCCceEEecCCCceEEEEEccCCcceeEecCC-----CCceEEEEEccCceEEEecCC---CccEEEEEcc
Confidence 334444444 566777778888999999 65544444333 478899999888875544333 5888666554
Q ss_pred CCCcee-ccCCCCceEEEEEecCCCCCCCCcceEEEEcCCCcEEEEEEecCCcccceeeEEeeeCCCCCceeeEEEEeec
Q 002318 99 WSKPRV-LSKLKGLVVNAVAWNRQQITEASTKEIILGTDTGQLHEMAVDEKDKREKYIKLLFELNELPEAFMGLQMETAS 177 (936)
Q Consensus 99 ~~k~k~-L~klkg~~I~sVaw~~~~~~~~st~~iLiGt~~G~i~e~~i~~~~~~~~~~k~v~~l~~~~~~I~gi~~~~~~ 177 (936)
....+- +- ...-.|.=+.|.|. ..-++.|+++|.++-..|... .++|.. .=+. .|.+.=.+..
T Consensus 137 tg~~~~~~~-~e~~dieWl~WHp~------a~illAG~~DGsvWmw~ip~~----~~~kv~-~Gh~--~~ct~G~f~p-- 200 (399)
T KOG0296|consen 137 TGGEQWKLD-QEVEDIEWLKWHPR------AHILLAGSTDGSVWMWQIPSQ----ALCKVM-SGHN--SPCTCGEFIP-- 200 (399)
T ss_pred cCceEEEee-cccCceEEEEeccc------ccEEEeecCCCcEEEEECCCc----ceeeEe-cCCC--CCcccccccC--
Confidence 433222 21 13346777777742 124566889999999888652 344443 3333 4466555542
Q ss_pred cCCCceEEEEEECCCeEEEEecC
Q 002318 178 LSNGTRYYVMAVTPTRLYSFTGF 200 (936)
Q Consensus 178 ~~~~~~~~i~ast~~rly~f~~~ 200 (936)
.+ +.++-+.++..+.-|...
T Consensus 201 -dG--Kr~~tgy~dgti~~Wn~k 220 (399)
T KOG0296|consen 201 -DG--KRILTGYDDGTIIVWNPK 220 (399)
T ss_pred -CC--ceEEEEecCceEEEEecC
Confidence 12 334444556667778653
No 392
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=39.18 E-value=3.3e+02 Score=33.17 Aligned_cols=112 Identities=14% Similarity=0.154 Sum_probs=75.1
Q ss_pred CceeEEEEeCC--EEEEEecCCeEEEEeC-CCCCceeeEcCCCCCCccceeEEEeCCCCCeEEEEeecCCCccEEEEecC
Q 002318 22 GVITCMSAGND--VIVLGTSKGWLIRHDF-GAGDSYDIDLSAGRPGEQSIHKVFVDPGGSHCIATIVGSGGAETFYTHAK 98 (936)
Q Consensus 22 ~~i~~l~v~~n--~l~l~~~~g~l~ridl-~~~~~~~~~l~~~~~~~~~i~~i~lDp~G~hlli~~~~~~~g~~~Y~~~~ 98 (936)
..+-.|+|..+ .++.+..+..|-.+|+ .+.++..|.-.. +.++...++-+||.|-++..+.. +-...++...
T Consensus 597 tTlYDm~Vdp~~k~v~t~cQDrnirif~i~sgKq~k~FKgs~--~~eG~lIKv~lDPSgiY~atScs---dktl~~~Df~ 671 (1080)
T KOG1408|consen 597 TTLYDMAVDPTSKLVVTVCQDRNIRIFDIESGKQVKSFKGSR--DHEGDLIKVILDPSGIYLATSCS---DKTLCFVDFV 671 (1080)
T ss_pred ceEEEeeeCCCcceEEEEecccceEEEeccccceeeeecccc--cCCCceEEEEECCCccEEEEeec---CCceEEEEec
Confidence 34667888776 4566667777878888 777776665442 33578999999999999887765 5555455444
Q ss_pred CCCceeccCCCCc--eEEEEEecCCCCCCCCcceEEEEcCCCcEEEEEEe
Q 002318 99 WSKPRVLSKLKGL--VVNAVAWNRQQITEASTKEIILGTDTGQLHEMAVD 146 (936)
Q Consensus 99 ~~k~k~L~klkg~--~I~sVaw~~~~~~~~st~~iLiGt~~G~i~e~~i~ 146 (936)
+... +....|+ .|+-|-|.+ +.+.++=-..+|-||--.+.
T Consensus 672 sgEc--vA~m~GHsE~VTG~kF~n------DCkHlISvsgDgCIFvW~lp 713 (1080)
T KOG1408|consen 672 SGEC--VAQMTGHSEAVTGVKFLN------DCKHLISVSGDGCIFVWKLP 713 (1080)
T ss_pred cchh--hhhhcCcchheeeeeecc------cchhheeecCCceEEEEECc
Confidence 4332 2222443 788888873 34566666789999887664
No 393
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=39.17 E-value=33 Score=23.28 Aligned_cols=24 Identities=13% Similarity=0.364 Sum_probs=20.6
Q ss_pred HHHHHHHHHhcccHHHHHHHHhCC
Q 002318 537 HEIVVHHYIQQGEAKKALQMLRKP 560 (936)
Q Consensus 537 y~~ll~~yi~~~~~~~AL~~L~~~ 560 (936)
|..++.-|...+++++|++++.+.
T Consensus 3 ~n~li~~~~~~~~~~~a~~~~~~M 26 (35)
T TIGR00756 3 YNTLIDGLCKAGRVEEALELFKEM 26 (35)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHH
Confidence 567889999999999999998754
No 394
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=38.98 E-value=6.2e+02 Score=33.70 Aligned_cols=120 Identities=11% Similarity=0.108 Sum_probs=70.3
Q ss_pred hhHHHHHHHHHhcccHHHHHHHHhCC----CCchhhHHhhHHHHHhHChHHHHHHHHccC--CCC---CCcchhHhhhcC
Q 002318 535 EQHEIVVHHYIQQGEAKKALQMLRKP----AVPIDLQYKFAPDLIMLDAYETVESWMTTN--NLN---PRKLIPAMMRYS 605 (936)
Q Consensus 535 ~dy~~ll~~yi~~~~~~~AL~~L~~~----~d~~~li~k~~~~Ll~~~p~~ti~ll~~~~--~ld---~~~li~~L~~~~ 605 (936)
.=|..+..+|..-+++++|-++|... ......+..|+.-||.++.+++..-+++.. .++ ..++|..+....
T Consensus 1531 ~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLE 1610 (1710)
T KOG1070|consen 1531 TVHLKLLGIYEKSEKNDEADELLRLMLKKFGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLE 1610 (1710)
T ss_pred HHHHHHHHHHHHhhcchhHHHHHHHHHHHhcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHH
Confidence 33556777888888999998887643 222478889999999998877666554321 222 223333322210
Q ss_pred -CCCCCCCChHHHHHHHHHHHhhcCCCCHhHHHHHHHHhhcCCChHHHHHHHHHh
Q 002318 606 -SEPHAKNETHEVIKYLEFCVHRLHNEDPGVHNLLLSLYAKQEDDSALLRFLQCK 659 (936)
Q Consensus 606 -~~~~~~~~~~~~~~YLe~li~~~~~~~~~~hn~ll~Ly~~~~~~~~Ll~fL~~~ 659 (936)
+. ..++.+..-+|.++...+. -..+|+-|+..=+++.+.+.+.+.+++-
T Consensus 1611 Fk~----GDaeRGRtlfEgll~ayPK-RtDlW~VYid~eik~~~~~~vR~lfeRv 1660 (1710)
T KOG1070|consen 1611 FKY----GDAERGRTLFEGLLSAYPK-RTDLWSVYIDMEIKHGDIKYVRDLFERV 1660 (1710)
T ss_pred hhc----CCchhhHHHHHHHHhhCcc-chhHHHHHHHHHHccCCHHHHHHHHHHH
Confidence 00 1223445556666655442 3567777777666666555555555543
No 395
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=38.79 E-value=47 Score=29.95 Aligned_cols=50 Identities=16% Similarity=0.154 Sum_probs=40.6
Q ss_pred HHHHchhhHHHHHHhcCC-----hh--hHHHHHHHHHHHHHhcCCHHHHHHHHHHhc
Q 002318 369 KVYLDMKEYAAALANCRD-----PL--QRDQVYLVQAEAAFATKDFHRAASFYAKIN 418 (936)
Q Consensus 369 ~~ll~~~~f~~Al~~~~~-----~~--~~~~I~~~~~~~L~~~g~y~~Aa~~y~~~~ 418 (936)
..+++.|+|++|+.+.+. |. ....+....|..+...|++++|.+.|.+..
T Consensus 47 ~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 103 (119)
T TIGR02795 47 EAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGMSLQELGDKEKAKATLQQVI 103 (119)
T ss_pred HHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHHHHHHhCChHHHHHHHHHHH
Confidence 348889999999999763 22 245778899999999999999999988765
No 396
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=38.73 E-value=34 Score=37.14 Aligned_cols=48 Identities=25% Similarity=0.380 Sum_probs=31.6
Q ss_pred HHchhhHHHHHHhcCChhh----HHHHHHHHHHHHHhcCCHHHHHHHHHHhc
Q 002318 371 YLDMKEYAAALANCRDPLQ----RDQVYLVQAEAAFATKDFHRAASFYAKIN 418 (936)
Q Consensus 371 ll~~~~f~~Al~~~~~~~~----~~~I~~~~~~~L~~~g~y~~Aa~~y~~~~ 418 (936)
|.+-|+|+.|++-|+.... -..-+.+-|-.++..|+|.+|++.|.+..
T Consensus 125 y~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~~~A~~aykKaL 176 (304)
T KOG0553|consen 125 YSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKYEEAIEAYKKAL 176 (304)
T ss_pred HHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcHHHHHHHHHhhh
Confidence 7777777777777764322 22444556666777777777777777765
No 397
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=38.65 E-value=1.3e+02 Score=39.16 Aligned_cols=43 Identities=9% Similarity=0.074 Sum_probs=20.3
Q ss_pred hHHHHHHHHHHHhhcCCCCHhHHHHHHHHhhcCCChHHHHHHHHH
Q 002318 614 THEVIKYLEFCVHRLHNEDPGVHNLLLSLYAKQEDDSALLRFLQC 658 (936)
Q Consensus 614 ~~~~~~YLe~li~~~~~~~~~~hn~ll~Ly~~~~~~~~Ll~fL~~ 658 (936)
...++..++..+...+. ...+..+-.++.+.++.++.+.+++.
T Consensus 592 ~~eAl~~~~~AL~l~P~--~~a~~~LA~~l~~lG~~deA~~~l~~ 634 (987)
T PRK09782 592 PELALNDLTRSLNIAPS--ANAYVARATIYRQRHNVPAAVSDLRA 634 (987)
T ss_pred HHHHHHHHHHHHHhCCC--HHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 34566666655554442 34444444445444433444444443
No 398
>KOG2177 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=38.60 E-value=15 Score=40.12 Aligned_cols=33 Identities=30% Similarity=0.766 Sum_probs=28.2
Q ss_pred ccccccccchhhhhcccccccccccCCCCCCCCEEEEcCCChhHHHhHHHHH
Q 002318 832 RDEDCGVCRRKILVAGRDYRMARGYASVGPMAPFYVFPCGHAFHAQCLIAHV 883 (936)
Q Consensus 832 ~~~~C~~C~k~L~~~~~~~~~~~~~~~~~~~~~fvvFpCgH~fH~~CL~~~~ 883 (936)
..-.|.+|-..+.. + .+.||||.|-..|+....
T Consensus 12 ~~~~C~iC~~~~~~------------------p-~~l~C~H~~c~~C~~~~~ 44 (386)
T KOG2177|consen 12 EELTCPICLEYFRE------------------P-VLLPCGHNFCRACLTRSW 44 (386)
T ss_pred ccccChhhHHHhhc------------------C-ccccccchHhHHHHHHhc
Confidence 45679999988887 6 788999999999998855
No 399
>PF10433 MMS1_N: Mono-functional DNA-alkylating methyl methanesulfonate N-term; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 2B5N_C 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A ....
Probab=38.41 E-value=3.2e+02 Score=32.44 Aligned_cols=152 Identities=16% Similarity=0.138 Sum_probs=75.7
Q ss_pred eCCEEEEEecCCeEEEEeC-CCCC---ceeeE--cCCCCCCccceeEEEeCCCCCeEEEEeecCCCccEEEEecCCCCce
Q 002318 30 GNDVIVLGTSKGWLIRHDF-GAGD---SYDID--LSAGRPGEQSIHKVFVDPGGSHCIATIVGSGGAETFYTHAKWSKPR 103 (936)
Q Consensus 30 ~~n~l~l~~~~g~l~ridl-~~~~---~~~~~--l~~~~~~~~~i~~i~lDp~G~hlli~~~~~~~g~~~Y~~~~~~k~k 103 (936)
.++.++++..+|.|+.+.+ ..+. +..+. .+. .. .=.++++.+.++++.+. .|+..++.....+++
T Consensus 221 ~~~~~lL~~e~G~l~~l~l~~~~~~i~i~~~g~~~~~----~s--~l~~l~~g~d~lf~gs~---~gds~l~~~~~~~l~ 291 (504)
T PF10433_consen 221 DGDRILLQDEDGDLYLLTLDNDGGSISITYLGTLCSI----AS--SLTYLKNGGDYLFVGSE---FGDSQLLQISLSNLE 291 (504)
T ss_dssp TSSEEEEEETTSEEEEEEEEEEEEEEEEEEEEE--S-----ES--EEEEESTT--EEEEEES---SS-EEEEEEESESEE
T ss_pred CCCEEEEEeCCCeEEEEEEEECCCeEEEEEcCCcCCh----hh--eEEEEcCCCEEEEEEEe---cCCcEEEEEeCCCcE
Confidence 3568999999999999988 3221 12111 111 11 22355555789999988 566655554455666
Q ss_pred eccCCCC-ceEEEEEecCCCCCCCC----cceEEEEc---CCCcEEEEEEecCCcccceeeEEeeeCCCCCceeeEEEEe
Q 002318 104 VLSKLKG-LVVNAVAWNRQQITEAS----TKEIILGT---DTGQLHEMAVDEKDKREKYIKLLFELNELPEAFMGLQMET 175 (936)
Q Consensus 104 ~L~klkg-~~I~sVaw~~~~~~~~s----t~~iLiGt---~~G~i~e~~i~~~~~~~~~~k~v~~l~~~~~~I~gi~~~~ 175 (936)
.+..+.| -+|..++.-+....... ..+++..+ ++|.|-+..=.-+ .++.......++ + +++++..+
T Consensus 292 ~~~~~~N~~Pi~D~~v~~~~~~~~~~~~~~~~lv~~sG~g~~gsL~~lr~Gi~--~~~~~~~~~~l~---~-v~~iW~l~ 365 (504)
T PF10433_consen 292 VLDSLPNWGPIVDFCVVDSSNSGQPSNPSSDQLVACSGAGKRGSLRILRNGIG--IEGLELASSELP---G-VTGIWTLK 365 (504)
T ss_dssp EEEEE----SEEEEEEE-TSSSSS-------EEEEEESSGGG-EEEEEEESBE--EE--EEEEEEES---T-EEEEEEE-
T ss_pred EEEeccCcCCccceEEeccccCCCCcccccceEEEEECcCCCCcEEEEeccCC--ceeeeeeccCCC---C-ceEEEEee
Confidence 6666665 37777777533211111 11566543 5677776643221 110011112333 3 88887765
Q ss_pred eccCCCceEEEEEEC--CCeEEEEe
Q 002318 176 ASLSNGTRYYVMAVT--PTRLYSFT 198 (936)
Q Consensus 176 ~~~~~~~~~~i~ast--~~rly~f~ 198 (936)
....+ ..++++ |. .++++++.
T Consensus 366 ~~~~~-~~~lv~-S~~~~T~vl~~~ 388 (504)
T PF10433_consen 366 LSSSD-HSYLVL-SFPNETRVLQIS 388 (504)
T ss_dssp SSSSS-BSEEEE-EESSEEEEEEES
T ss_pred ecCCC-ceEEEE-EcCCceEEEEEe
Confidence 43212 345555 54 56788774
No 400
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=38.22 E-value=34 Score=22.67 Aligned_cols=25 Identities=16% Similarity=0.340 Sum_probs=21.1
Q ss_pred HHHHHHHHHhcccHHHHHHHHhCCC
Q 002318 537 HEIVVHHYIQQGEAKKALQMLRKPA 561 (936)
Q Consensus 537 y~~ll~~yi~~~~~~~AL~~L~~~~ 561 (936)
|..+++-|...+++++|++++.+..
T Consensus 3 y~~li~~~~~~~~~~~a~~~~~~M~ 27 (31)
T PF01535_consen 3 YNSLISGYCKMGQFEEALEVFDEMR 27 (31)
T ss_pred HHHHHHHHHccchHHHHHHHHHHHh
Confidence 5678899999999999999987653
No 401
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=37.91 E-value=5.7e+02 Score=30.75 Aligned_cols=65 Identities=11% Similarity=0.081 Sum_probs=43.0
Q ss_pred hHHHHHHhcC-----ChhhHHHHHHHHHHHHHhcCCHHHHHHHHHHhcCCCChHHHHHHhcCcChHHHHHHHHHH
Q 002318 376 EYAAALANCR-----DPLQRDQVYLVQAEAAFATKDFHRAASFYAKINYILSFEEITLKFISVSEQDALRTFLLR 445 (936)
Q Consensus 376 ~f~~Al~~~~-----~~~~~~~I~~~~~~~L~~~g~y~~Aa~~y~~~~~~~~~E~v~lkFl~~~~~~~L~~YL~~ 445 (936)
++-.|.++.. .|..-..|....++..+.+|++..|++++.... .+|-.. |.+.++..++.-++-.
T Consensus 356 ~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~--~~~~ss---~~~~~~~P~~V~aiv~ 425 (652)
T KOG2376|consen 356 KHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEVALEILSLFL--ESWKSS---ILEAKHLPGTVGAIVA 425 (652)
T ss_pred HHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHh--hhhhhh---hhhhccChhHHHHHHH
Confidence 4555555532 244446788999999999999999999998765 455444 4444555555554444
No 402
>PF04423 Rad50_zn_hook: Rad50 zinc hook motif; InterPro: IPR007517 The Mre11 complex (Mre11 Rad50 Nbs1) is central to chromosomal maintenance and functions in homologous recombination, telomere maintenance and sister chromatid association. The Rad50 coiled-coil region contains a dimer interface at the apex of the coiled coils in which pairs of conserved Cys-X-X-Cys motifs form interlocking hooks that bind one Zn ion. This alignment includes the zinc hook motif and a short stretch of coiled-coil on either side.; GO: 0004518 nuclease activity, 0005524 ATP binding, 0008270 zinc ion binding, 0006281 DNA repair; PDB: 1L8D_B.
Probab=37.73 E-value=11 Score=29.99 Aligned_cols=25 Identities=20% Similarity=0.441 Sum_probs=12.3
Q ss_pred HHHHHHHHHhcccEeecccccccccchhhhh
Q 002318 815 NIRNDISALAQRYAVIDRDEDCGVCRRKILV 845 (936)
Q Consensus 815 ~i~~~i~~~~~r~~~i~~~~~C~~C~k~L~~ 845 (936)
.+...+..+... ...|++|+++|..
T Consensus 8 ~~~k~i~~l~~~------~~~CPlC~r~l~~ 32 (54)
T PF04423_consen 8 ELKKYIEELKEA------KGCCPLCGRPLDE 32 (54)
T ss_dssp HHHHHHHHHTT-------SEE-TTT--EE-H
T ss_pred HHHHHHHHHhcC------CCcCCCCCCCCCH
Confidence 344445555432 2389999999976
No 403
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=37.60 E-value=9.6e+02 Score=30.40 Aligned_cols=72 Identities=17% Similarity=0.330 Sum_probs=52.2
Q ss_pred hhHHHHHHchhhHHHHHHhcCChhhHHHHHHHHHHHHHhcCCHHHHHHHHHHhcCCCChHHHHHHhcCcChHHHHH
Q 002318 365 RDMWKVYLDMKEYAAALANCRDPLQRDQVYLVQAEAAFATKDFHRAASFYAKINYILSFEEITLKFISVSEQDALR 440 (936)
Q Consensus 365 ~~~W~~ll~~~~f~~Al~~~~~~~~~~~I~~~~~~~L~~~g~y~~Aa~~y~~~~~~~~~E~v~lkFl~~~~~~~L~ 440 (936)
+....+-|+-|+.|.||+.|+.- ....+-.+-|+.-+.+|+.+-|-.+|.++. .||.....++=.+..+-|.
T Consensus 647 ~tRF~LaLe~gnle~ale~akkl-dd~d~w~rLge~Al~qgn~~IaEm~yQ~~k---nfekLsfLYliTgn~eKL~ 718 (1202)
T KOG0292|consen 647 RTRFELALECGNLEVALEAAKKL-DDKDVWERLGEEALRQGNHQIAEMCYQRTK---NFEKLSFLYLITGNLEKLS 718 (1202)
T ss_pred chheeeehhcCCHHHHHHHHHhc-CcHHHHHHHHHHHHHhcchHHHHHHHHHhh---hhhheeEEEEEeCCHHHHH
Confidence 45555688889999999988732 223566777888899999999988998884 7887766666555554443
No 404
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=37.16 E-value=1.1e+02 Score=32.00 Aligned_cols=28 Identities=21% Similarity=0.198 Sum_probs=23.5
Q ss_pred EEeCCCCCeEEEEeecCCCccEEEEecCCCC
Q 002318 71 VFVDPGGSHCIATIVGSGGAETFYTHAKWSK 101 (936)
Q Consensus 71 i~lDp~G~hlli~~~~~~~g~~~Y~~~~~~k 101 (936)
+|+...|+++++.|. +|..|-++....|
T Consensus 16 ~~l~~~~~~Ll~iT~---~G~l~vWnl~~~k 43 (219)
T PF07569_consen 16 SFLECNGSYLLAITS---SGLLYVWNLKKGK 43 (219)
T ss_pred EEEEeCCCEEEEEeC---CCeEEEEECCCCe
Confidence 668889999999998 8999999876643
No 405
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=36.99 E-value=4.2e+02 Score=29.46 Aligned_cols=31 Identities=13% Similarity=0.147 Sum_probs=27.0
Q ss_pred CceeEEEEeCCEEEEEecCCeEEEEeC-CCCC
Q 002318 22 GVITCMSAGNDVIVLGTSKGWLIRHDF-GAGD 52 (936)
Q Consensus 22 ~~i~~l~v~~n~l~l~~~~g~l~ridl-~~~~ 52 (936)
+++.++.++||+|+--..+.++-.||+ .|.+
T Consensus 278 eaVLhlrf~ng~mvtcSkDrsiaVWdm~sps~ 309 (499)
T KOG0281|consen 278 EAVLHLRFSNGYMVTCSKDRSIAVWDMASPTD 309 (499)
T ss_pred ceeEEEEEeCCEEEEecCCceeEEEeccCchH
Confidence 578899999999999999999999999 7765
No 406
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=36.64 E-value=6.4e+02 Score=28.13 Aligned_cols=146 Identities=12% Similarity=0.194 Sum_probs=0.0
Q ss_pred hhcCCCceeEEEEeCC--EEEEEe-cCCeEEEEeC--CCCCceeeE----cCCCCCCccceeEEEeCCCCCeEEEEeecC
Q 002318 17 AAKGRGVITCMSAGND--VIVLGT-SKGWLIRHDF--GAGDSYDID----LSAGRPGEQSIHKVFVDPGGSHCIATIVGS 87 (936)
Q Consensus 17 ~~~~~~~i~~l~v~~n--~l~l~~-~~g~l~ridl--~~~~~~~~~----l~~~~~~~~~i~~i~lDp~G~hlli~~~~~ 87 (936)
.+.+.+. .|++++.+ .+|+.. .++.|..+++ .......++ +|....+...-..|.++|.|++|.++....
T Consensus 188 ~~~G~GP-Rh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~ 266 (345)
T PF10282_consen 188 VPPGSGP-RHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRGS 266 (345)
T ss_dssp CSTTSSE-EEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECTT
T ss_pred cccCCCC-cEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccccccccCCceeEEEecCCCEEEEEeccC
Q ss_pred CCccEEEEecCCCCceeccCCC--CceEEEEEecCCCCCCCCcceEEEEcCC-CcEEEEEEecCCcccceeeEEeeeCCC
Q 002318 88 GGAETFYTHAKWSKPRVLSKLK--GLVVNAVAWNRQQITEASTKEIILGTDT-GQLHEMAVDEKDKREKYIKLLFELNEL 164 (936)
Q Consensus 88 ~~g~~~Y~~~~~~k~k~L~klk--g~~I~sVaw~~~~~~~~st~~iLiGt~~-G~i~e~~i~~~~~~~~~~k~v~~l~~~ 164 (936)
++=..|=++...-+.+.+.... |..-+.+++++ +.+-++++..+ +.|..+.++...+.-+.......+++
T Consensus 267 ~sI~vf~~d~~~g~l~~~~~~~~~G~~Pr~~~~s~------~g~~l~Va~~~s~~v~vf~~d~~tG~l~~~~~~~~~~~- 339 (345)
T PF10282_consen 267 NSISVFDLDPATGTLTLVQTVPTGGKFPRHFAFSP------DGRYLYVANQDSNTVSVFDIDPDTGKLTPVGSSVPIPS- 339 (345)
T ss_dssp TEEEEEEECTTTTTEEEEEEEEESSSSEEEEEE-T------TSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEEESSS-
T ss_pred CEEEEEEEecCCCceEEEEEEeCCCCCccEEEEeC------CCCEEEEEecCCCeEEEEEEeCCCCcEEEecccccCCC-
Q ss_pred CCceeeEEE
Q 002318 165 PEAFMGLQM 173 (936)
Q Consensus 165 ~~~I~gi~~ 173 (936)
...|.|
T Consensus 340 ---p~ci~f 345 (345)
T PF10282_consen 340 ---PVCIVF 345 (345)
T ss_dssp ---EEEEEE
T ss_pred ---CEEEeC
No 407
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=36.42 E-value=93 Score=37.91 Aligned_cols=84 Identities=10% Similarity=0.035 Sum_probs=60.7
Q ss_pred CCEEEEEecCCeEEEEeC-CCCCce-eeEcCCCCCCccceeEEEeCCCCCeEEEEeecCCCccEEEEecCCCCceeccCC
Q 002318 31 NDVIVLGTSKGWLIRHDF-GAGDSY-DIDLSAGRPGEQSIHKVFVDPGGSHCIATIVGSGGAETFYTHAKWSKPRVLSKL 108 (936)
Q Consensus 31 ~n~l~l~~~~g~l~ridl-~~~~~~-~~~l~~~~~~~~~i~~i~lDp~G~hlli~~~~~~~g~~~Y~~~~~~k~k~L~kl 108 (936)
.|..+-+..+|.|-.||+ +|.+.. .+--| .+.|..+-..|++..+.-+.. |+.+-.+.-..++++++.-.
T Consensus 189 ~~~F~s~~dsG~lqlWDlRqp~r~~~k~~AH-----~GpV~c~nwhPnr~~lATGGR---DK~vkiWd~t~~~~~~~~tI 260 (839)
T KOG0269|consen 189 GNKFASIHDSGYLQLWDLRQPDRCEKKLTAH-----NGPVLCLNWHPNREWLATGGR---DKMVKIWDMTDSRAKPKHTI 260 (839)
T ss_pred CceEEEecCCceEEEeeccCchhHHHHhhcc-----cCceEEEeecCCCceeeecCC---CccEEEEeccCCCccceeEE
Confidence 466777889999999999 888754 22233 468888999999998888777 88887776655444332211
Q ss_pred -CCceEEEEEecCCC
Q 002318 109 -KGLVVNAVAWNRQQ 122 (936)
Q Consensus 109 -kg~~I~sVaw~~~~ 122 (936)
-+.++..|.|-|..
T Consensus 261 nTiapv~rVkWRP~~ 275 (839)
T KOG0269|consen 261 NTIAPVGRVKWRPAR 275 (839)
T ss_pred eecceeeeeeeccCc
Confidence 46799999998543
No 408
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=35.82 E-value=3.5e+02 Score=30.49 Aligned_cols=116 Identities=15% Similarity=0.214 Sum_probs=66.4
Q ss_pred cceeEEEeCCCCCeEEEEeecCCCccEEEEecCCC--CceeccCCCCceEEEEEecCCCCCCCCcceEEEEcCCCcEEEE
Q 002318 66 QSIHKVFVDPGGSHCIATIVGSGGAETFYTHAKWS--KPRVLSKLKGLVVNAVAWNRQQITEASTKEIILGTDTGQLHEM 143 (936)
Q Consensus 66 ~~i~~i~lDp~G~hlli~~~~~~~g~~~Y~~~~~~--k~k~L~klkg~~I~sVaw~~~~~~~~st~~iLiGt~~G~i~e~ 143 (936)
.+|..+-=.|+-.-+|.+..+ +|..-.+...+. |+-...|-.+-+|..|.||... .-+.-|..+|.+-.-
T Consensus 258 ~SVEDLqWSptE~~vfaScS~--DgsIrIWDiRs~~~~~~~~~kAh~sDVNVISWnr~~------~lLasG~DdGt~~iw 329 (440)
T KOG0302|consen 258 KSVEDLQWSPTEDGVFASCSC--DGSIRIWDIRSGPKKAAVSTKAHNSDVNVISWNRRE------PLLASGGDDGTLSIW 329 (440)
T ss_pred cchhhhccCCccCceEEeeec--CceEEEEEecCCCccceeEeeccCCceeeEEccCCc------ceeeecCCCceEEEE
Confidence 355555556776666665442 676666655443 3444566677899999999432 135567888977665
Q ss_pred EEecCCcccceeeEEeeeCCCCCceeeEEEEeeccCCCceEEEEEEC-CCeEEEEe
Q 002318 144 AVDEKDKREKYIKLLFELNELPEAFMGLQMETASLSNGTRYYVMAVT-PTRLYSFT 198 (936)
Q Consensus 144 ~i~~~~~~~~~~k~v~~l~~~~~~I~gi~~~~~~~~~~~~~~i~ast-~~rly~f~ 198 (936)
.|..-+ ..+-+-+ |+-.. +||++|.|... +. -++.|+. ...+-.|.
T Consensus 330 DLR~~~-~~~pVA~-fk~Hk--~pItsieW~p~----e~-s~iaasg~D~QitiWD 376 (440)
T KOG0302|consen 330 DLRQFK-SGQPVAT-FKYHK--APITSIEWHPH----ED-SVIAASGEDNQITIWD 376 (440)
T ss_pred Ehhhcc-CCCccee-EEecc--CCeeEEEeccc----cC-ceEEeccCCCcEEEEE
Confidence 553221 1111222 34444 67999999842 22 2333333 55565564
No 409
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=35.64 E-value=6.6e+02 Score=28.42 Aligned_cols=148 Identities=14% Similarity=0.171 Sum_probs=88.1
Q ss_pred eeEEEEeCC-EEEEEecCCeEEEEeC-CCCCceeeEcCCCCCCccceeEEEeCCCCCeEEEEeecCCCccEEEEecCCC-
Q 002318 24 ITCMSAGND-VIVLGTSKGWLIRHDF-GAGDSYDIDLSAGRPGEQSIHKVFVDPGGSHCIATIVGSGGAETFYTHAKWS- 100 (936)
Q Consensus 24 i~~l~v~~n-~l~l~~~~g~l~ridl-~~~~~~~~~l~~~~~~~~~i~~i~lDp~G~hlli~~~~~~~g~~~Y~~~~~~- 100 (936)
++++.-.+. .+|=+--+-+|-+||| .+....++--+ -.+..|-..| -.++++|.. +-...-++...+
T Consensus 263 Vs~V~w~d~~v~yS~SwDHTIk~WDletg~~~~~~~~~------ksl~~i~~~~-~~~Ll~~gs---sdr~irl~DPR~~ 332 (423)
T KOG0313|consen 263 VSSVVWSDATVIYSVSWDHTIKVWDLETGGLKSTLTTN------KSLNCISYSP-LSKLLASGS---SDRHIRLWDPRTG 332 (423)
T ss_pred eeeEEEcCCCceEeecccceEEEEEeecccceeeeecC------cceeEeeccc-ccceeeecC---CCCceeecCCCCC
Confidence 444444443 4455566678999999 66655555444 3567777777 446777654 222222332111
Q ss_pred --Cc--eeccCCCCceEEEEEecCCCCCCCCcceEEEEcCCCcEEEEEEecCCcccceee-EEeeeCCCCCceeeEEEEe
Q 002318 101 --KP--RVLSKLKGLVVNAVAWNRQQITEASTKEIILGTDTGQLHEMAVDEKDKREKYIK-LLFELNELPEAFMGLQMET 175 (936)
Q Consensus 101 --k~--k~L~klkg~~I~sVaw~~~~~~~~st~~iLiGt~~G~i~e~~i~~~~~~~~~~k-~v~~l~~~~~~I~gi~~~~ 175 (936)
++ ..+.--++ -|++|-|++. ++..|+=|.-+|.+---.+ |+.+ .+|.+..-...|..+.|..
T Consensus 333 ~gs~v~~s~~gH~n-wVssvkwsp~-----~~~~~~S~S~D~t~klWDv-------RS~k~plydI~~h~DKvl~vdW~~ 399 (423)
T KOG0313|consen 333 DGSVVSQSLIGHKN-WVSSVKWSPT-----NEFQLVSGSYDNTVKLWDV-------RSTKAPLYDIAGHNDKVLSVDWNE 399 (423)
T ss_pred CCceeEEeeecchh-hhhheecCCC-----CceEEEEEecCCeEEEEEe-------ccCCCcceeeccCCceEEEEeccC
Confidence 11 12332233 7999999953 4557777888886644332 2345 6888875446799999962
Q ss_pred eccCCCceEEEEEECCCeEEEEecC
Q 002318 176 ASLSNGTRYYVMAVTPTRLYSFTGF 200 (936)
Q Consensus 176 ~~~~~~~~~~i~ast~~rly~f~~~ 200 (936)
...++-..+.+.|+-|.|.
T Consensus 400 ------~~~IvSGGaD~~l~i~~~~ 418 (423)
T KOG0313|consen 400 ------GGLIVSGGADNKLRIFKGS 418 (423)
T ss_pred ------CceEEeccCcceEEEeccc
Confidence 2455555567888877663
No 410
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=35.36 E-value=71 Score=21.76 Aligned_cols=27 Identities=15% Similarity=0.244 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHhc
Q 002318 392 QVYLVQAEAAFATKDFHRAASFYAKIN 418 (936)
Q Consensus 392 ~I~~~~~~~L~~~g~y~~Aa~~y~~~~ 418 (936)
.+....|.-+...|++++|...|.++.
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~ 28 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKAL 28 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 456778999999999999999998875
No 411
>KOG4121 consensus Nuclear pore complex, Nup133 component (sc Nup133) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=35.16 E-value=3.2e+02 Score=34.82 Aligned_cols=122 Identities=11% Similarity=0.127 Sum_probs=0.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhcCCCChHHHHHHhcCcChHHHHHHHHHHHhhcccCchhHHHHHHHHHHHHHHHHHH
Q 002318 394 YLVQAEAAFATKDFHRAASFYAKINYILSFEEITLKFISVSEQDALRTFLLRKLDNLAKDDKCQITMISTWATELYLDKI 473 (936)
Q Consensus 394 ~~~~~~~L~~~g~y~~Aa~~y~~~~~~~~~E~v~lkFl~~~~~~~L~~YL~~~l~~l~~~~~~~~~lL~~Wl~ely~~~l 473 (936)
++.....|..-|.|+.||++-.+-. .|...+...-+.++.+.|..|...-.+. ++.+-..|..|+++
T Consensus 775 Rrdwlq~L~~vg~~e~Ai~iAEKY~---DfqsLV~lcdqld~kdrLq~y~~~~~e~----~~eFs~~lf~y~ve------ 841 (1128)
T KOG4121|consen 775 RRDWLQVLCKVGQYEQAIQIAEKYK---DFQSLVQLCDQLDQKDRLQDYETFFNEY----PKEFSFFLFEYLVE------ 841 (1128)
T ss_pred HHHHHHHHHhcchHHHHHHHHHHhh---hHHHHHHHHHhhCchhHHHHHHHHHHhh----hHHHHHHHHHHHHh------
Q ss_pred hhhhcccchhhccchHHHHHHHHHHHHHHhcccccCCHHHHHHHHHHcCChhHHHHHHHhhhhHHHHH-HHHHhcccHHH
Q 002318 474 NRLLLEDDTALENRSSEYQSIMREFRAFLSDCKDVLDEATTMKLLESYGRVEELVFFASLKEQHEIVV-HHYIQQGEAKK 552 (936)
Q Consensus 474 ~~~~~e~~~~~~~~~~~~~~~~~~l~~fl~~~~~~ld~~tv~~ll~~~g~~e~~l~~a~~~~dy~~ll-~~yi~~~~~~~ 552 (936)
..++.++...|.. ......+.+++ .||..+. -+-+..|+|++
T Consensus 842 --------------~~k~~eLl~~f~~---------~~s~L~qFf~~--------------~d~~~lsWi~ei~nGdy~r 884 (1128)
T KOG4121|consen 842 --------------HGKLGELLFRFPQ---------QHSVLIQFFQE--------------RDYGHLSWIQEILNGDYER 884 (1128)
T ss_pred --------------hchHHHHHhcchh---------hHHHHHHHHhh--------------ccccccHHHHHHhcCcHHH
Q ss_pred HHHHHhCCCCchh
Q 002318 553 ALQMLRKPAVPID 565 (936)
Q Consensus 553 AL~~L~~~~d~~~ 565 (936)
|-+.|.++....+
T Consensus 885 As~~L~~la~~e~ 897 (1128)
T KOG4121|consen 885 ASNTLLNLAVDEE 897 (1128)
T ss_pred HHHHHHHhcchHH
No 412
>smart00564 PQQ beta-propeller repeat. Beta-propeller repeat occurring in enzymes with pyrrolo-quinoline quinone (PQQ) as cofactor, in Ire1p-like Ser/Thr kinases, and in prokaryotic dehydrogenases.
Probab=34.78 E-value=72 Score=21.74 Aligned_cols=24 Identities=17% Similarity=0.270 Sum_probs=20.0
Q ss_pred EEeCCEEEEEecCCeEEEEeC-CCC
Q 002318 28 SAGNDVIVLGTSKGWLIRHDF-GAG 51 (936)
Q Consensus 28 ~v~~n~l~l~~~~g~l~ridl-~~~ 51 (936)
.+.++.++++..+|.|+-+|. .+.
T Consensus 3 ~~~~~~v~~~~~~g~l~a~d~~~G~ 27 (33)
T smart00564 3 VLSDGTVYVGSTDGTLYALDAKTGE 27 (33)
T ss_pred EEECCEEEEEcCCCEEEEEEcccCc
Confidence 456779999999999999998 544
No 413
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=34.74 E-value=8.9e+02 Score=29.19 Aligned_cols=48 Identities=13% Similarity=0.260 Sum_probs=34.6
Q ss_pred HHchhhHHHHHHhcCChhhH-HHHHHHHHHHHHhcCCHHHHHHHHHHhc
Q 002318 371 YLDMKEYAAALANCRDPLQR-DQVYLVQAEAAFATKDFHRAASFYAKIN 418 (936)
Q Consensus 371 ll~~~~f~~Al~~~~~~~~~-~~I~~~~~~~L~~~g~y~~Aa~~y~~~~ 418 (936)
.+..++-|+|+...+.-... +.+...+|+.++..|+|++|..+|....
T Consensus 89 ~Yrlnk~Dealk~~~~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~ 137 (652)
T KOG2376|consen 89 EYRLNKLDEALKTLKGLDRLDDKLLELRAQVLYRLERYDEALDIYQHLA 137 (652)
T ss_pred HHHcccHHHHHHHHhcccccchHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 44556666666655432222 3578899999999999999999998763
No 414
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=34.59 E-value=65 Score=32.00 Aligned_cols=73 Identities=15% Similarity=0.104 Sum_probs=40.5
Q ss_pred hHHHHHHhcCC--hhhHHHHHHHHHHHHHhcCCHHHHHHHHHHhcC--CCC------hHHHHHHhcCcChHHHHHHHHHH
Q 002318 376 EYAAALANCRD--PLQRDQVYLVQAEAAFATKDFHRAASFYAKINY--ILS------FEEITLKFISVSEQDALRTFLLR 445 (936)
Q Consensus 376 ~f~~Al~~~~~--~~~~~~I~~~~~~~L~~~g~y~~Aa~~y~~~~~--~~~------~E~v~lkFl~~~~~~~L~~YL~~ 445 (936)
++|..+.+... ...........|..+...|+|++|..+|.+... ..+ +......+...++.+.-..++.+
T Consensus 18 ~~~~~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 97 (172)
T PRK02603 18 MADLILKILPINKKAKEAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQ 97 (172)
T ss_pred HHHHHHHHcccccHhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 46666666542 234455667777777788888888887776541 111 22222333445555555555554
Q ss_pred Hhh
Q 002318 446 KLD 448 (936)
Q Consensus 446 ~l~ 448 (936)
-+.
T Consensus 98 al~ 100 (172)
T PRK02603 98 ALE 100 (172)
T ss_pred HHH
Confidence 444
No 415
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=34.50 E-value=4.1e+02 Score=33.18 Aligned_cols=77 Identities=16% Similarity=0.281 Sum_probs=50.8
Q ss_pred ccceeEEEeCCCCCeEEEEeecCCCcc-EEEEecCCCC------------cee-------ccCCCCceEEEEEecCCCCC
Q 002318 65 EQSIHKVFVDPGGSHCIATIVGSGGAE-TFYTHAKWSK------------PRV-------LSKLKGLVVNAVAWNRQQIT 124 (936)
Q Consensus 65 ~~~i~~i~lDp~G~hlli~~~~~~~g~-~~Y~~~~~~k------------~k~-------L~klkg~~I~sVaw~~~~~~ 124 (936)
.-.|++|-+.|+|.|+++... .|- +.++...+.+ .|. ...-.+..|..|.|.|...+
T Consensus 84 ~f~v~~i~~n~~g~~lal~G~---~~v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~ 160 (717)
T PF10168_consen 84 LFEVHQISLNPTGSLLALVGP---RGVVVLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSES 160 (717)
T ss_pred ceeEEEEEECCCCCEEEEEcC---CcEEEEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCC
Confidence 468999999999999999876 332 2344332211 111 11113468999999965322
Q ss_pred CCCcceEEEEcCCCcEEEEEEec
Q 002318 125 EASTKEIILGTDTGQLHEMAVDE 147 (936)
Q Consensus 125 ~~st~~iLiGt~~G~i~e~~i~~ 147 (936)
...+++=|+++.|-++.+..
T Consensus 161 ---~~~l~vLtsdn~lR~y~~~~ 180 (717)
T PF10168_consen 161 ---DSHLVVLTSDNTLRLYDISD 180 (717)
T ss_pred ---CCeEEEEecCCEEEEEecCC
Confidence 23788889999999998853
No 416
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=34.32 E-value=5.4e+02 Score=26.54 Aligned_cols=153 Identities=8% Similarity=0.137 Sum_probs=76.5
Q ss_pred hHHHHHHHHHHHHHhcCCHHHHHHHHHHhcCC---CChH-----HHHHHhcCcChHHHHHHHHHHHhhcccCchhHHHHH
Q 002318 389 QRDQVYLVQAEAAFATKDFHRAASFYAKINYI---LSFE-----EITLKFISVSEQDALRTFLLRKLDNLAKDDKCQITM 460 (936)
Q Consensus 389 ~~~~I~~~~~~~L~~~g~y~~Aa~~y~~~~~~---~~~E-----~v~lkFl~~~~~~~L~~YL~~~l~~l~~~~~~~~~l 460 (936)
.....+...|..++..|+|++|+..|.+.... .++. ....-+...++.+.-..++..-++.-+.+......
T Consensus 31 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a- 109 (235)
T TIGR03302 31 WPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYA- 109 (235)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHH-
Confidence 45678889999999999999999999876511 1221 22334455666666666666555444333221111
Q ss_pred HHHHHHHHHHHHHhhhhcccchhhccchHHHHHHHHHHHHHHhcccccCCHHHHHHHHHHcCChhHHHHHHHhhhhHHHH
Q 002318 461 ISTWATELYLDKINRLLLEDDTALENRSSEYQSIMREFRAFLSDCKDVLDEATTMKLLESYGRVEELVFFASLKEQHEIV 540 (936)
Q Consensus 461 L~~Wl~ely~~~l~~~~~e~~~~~~~~~~~~~~~~~~l~~fl~~~~~~ld~~tv~~ll~~~g~~e~~l~~a~~~~dy~~l 540 (936)
...+..+|...+.....+ .....+....+++++..+.+.... .+.+...+..... .....-.+
T Consensus 110 -~~~~g~~~~~~~~~~~~~--------~~~~~~A~~~~~~~~~~~p~~~~~---~~a~~~~~~~~~~-----~~~~~~~~ 172 (235)
T TIGR03302 110 -YYLRGLSNYNQIDRVDRD--------QTAAREAFEAFQELIRRYPNSEYA---PDAKKRMDYLRNR-----LAGKELYV 172 (235)
T ss_pred -HHHHHHHHHHhcccccCC--------HHHHHHHHHHHHHHHHHCCCChhH---HHHHHHHHHHHHH-----HHHHHHHH
Confidence 111222232221111000 012334455666766655432111 1111111111111 11112245
Q ss_pred HHHHHhcccHHHHHHHHhC
Q 002318 541 VHHYIQQGEAKKALQMLRK 559 (936)
Q Consensus 541 l~~yi~~~~~~~AL~~L~~ 559 (936)
..+|...|+|.+|+..+.+
T Consensus 173 a~~~~~~g~~~~A~~~~~~ 191 (235)
T TIGR03302 173 ARFYLKRGAYVAAINRFET 191 (235)
T ss_pred HHHHHHcCChHHHHHHHHH
Confidence 6788999999999987765
No 417
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=34.25 E-value=6e+02 Score=32.02 Aligned_cols=106 Identities=17% Similarity=0.177 Sum_probs=71.7
Q ss_pred ceeEEEEeCC--EEEEEecCCeEEEEeC-CCCCceeeEcCCCCCCccceeEEEeCCCCCeEEEEeecCCCccEE---EEe
Q 002318 23 VITCMSAGND--VIVLGTSKGWLIRHDF-GAGDSYDIDLSAGRPGEQSIHKVFVDPGGSHCIATIVGSGGAETF---YTH 96 (936)
Q Consensus 23 ~i~~l~v~~n--~l~l~~~~g~l~ridl-~~~~~~~~~l~~~~~~~~~i~~i~lDp~G~hlli~~~~~~~g~~~---Y~~ 96 (936)
.+-.++.+.. ++..++++|.|-.||. =..-+++++=| +++|+.|.++|++- ++|+ .|+-| .++
T Consensus 11 RvKglsFHP~rPwILtslHsG~IQlWDYRM~tli~rFdeH-----dGpVRgv~FH~~qp-lFVS-----GGDDykIkVWn 79 (1202)
T KOG0292|consen 11 RVKGLSFHPKRPWILTSLHSGVIQLWDYRMGTLIDRFDEH-----DGPVRGVDFHPTQP-LFVS-----GGDDYKIKVWN 79 (1202)
T ss_pred cccceecCCCCCEEEEeecCceeeeehhhhhhHHhhhhcc-----CCccceeeecCCCC-eEEe-----cCCccEEEEEe
Confidence 3456677776 6777889999999999 44556777776 68999999999986 5664 25554 344
Q ss_pred cCCCCceeccCCCCc--eEEEEEecCCCCCCCCcceEEEEc-CCCcEEEEEEecC
Q 002318 97 AKWSKPRVLSKLKGL--VVNAVAWNRQQITEASTKEIILGT-DTGQLHEMAVDEK 148 (936)
Q Consensus 97 ~~~~k~k~L~klkg~--~I~sVaw~~~~~~~~st~~iLiGt-~~G~i~e~~i~~~ 148 (936)
.+.. |-|-.|.|| .|+.|.|.+.. +-++.. .+-.|-.-++..+
T Consensus 80 Yk~r--rclftL~GHlDYVRt~~FHhey-------PWIlSASDDQTIrIWNwqsr 125 (1202)
T KOG0292|consen 80 YKTR--RCLFTLLGHLDYVRTVFFHHEY-------PWILSASDDQTIRIWNWQSR 125 (1202)
T ss_pred cccc--eehhhhccccceeEEeeccCCC-------ceEEEccCCCeEEEEeccCC
Confidence 4443 556677786 79999998543 444443 3344444444443
No 418
>PF13041 PPR_2: PPR repeat family
Probab=34.14 E-value=40 Score=25.79 Aligned_cols=24 Identities=17% Similarity=0.438 Sum_probs=21.6
Q ss_pred HHHHHHHHHhcccHHHHHHHHhCC
Q 002318 537 HEIVVHHYIQQGEAKKALQMLRKP 560 (936)
Q Consensus 537 y~~ll~~yi~~~~~~~AL~~L~~~ 560 (936)
|..++..|.+.|++++|++++.+.
T Consensus 6 yn~li~~~~~~~~~~~a~~l~~~M 29 (50)
T PF13041_consen 6 YNTLISGYCKAGKFEEALKLFKEM 29 (50)
T ss_pred HHHHHHHHHHCcCHHHHHHHHHHH
Confidence 677999999999999999998765
No 419
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=33.73 E-value=4.4e+02 Score=25.37 Aligned_cols=84 Identities=14% Similarity=0.212 Sum_probs=43.3
Q ss_pred CceeccCCCCceEEEEEecCCCCCCCCcceEEEEcCCCcEEEEEEecCCcccceeeEEeeeCCCCCceeeEEEEeeccCC
Q 002318 101 KPRVLSKLKGLVVNAVAWNRQQITEASTKEIILGTDTGQLHEMAVDEKDKREKYIKLLFELNELPEAFMGLQMETASLSN 180 (936)
Q Consensus 101 k~k~L~klkg~~I~sVaw~~~~~~~~st~~iLiGt~~G~i~e~~i~~~~~~~~~~k~v~~l~~~~~~I~gi~~~~~~~~~ 180 (936)
..+.|. -|..|+|++=-+-. .+..-.-+|+||... |+-+.++.+ .+-+.|. ++ ..|..|.+-.+. .
T Consensus 40 ~i~~LN--in~~italaaG~l~-~~~~~D~LliGt~t~-llaYDV~~N--~d~Fyke---~~---DGvn~i~~g~~~--~ 105 (136)
T PF14781_consen 40 DISFLN--INQEITALAAGRLK-PDDGRDCLLIGTQTS-LLAYDVENN--SDLFYKE---VP---DGVNAIVIGKLG--D 105 (136)
T ss_pred ceeEEE--CCCceEEEEEEecC-CCCCcCEEEEeccce-EEEEEcccC--chhhhhh---Cc---cceeEEEEEecC--C
Confidence 345565 57788888655322 122233677788776 666666554 1223333 33 236666665442 1
Q ss_pred CceEEEEEECCCeEEEEe
Q 002318 181 GTRYYVMAVTPTRLYSFT 198 (936)
Q Consensus 181 ~~~~~i~ast~~rly~f~ 198 (936)
...-++++-.++.+.=|.
T Consensus 106 ~~~~l~ivGGncsi~Gfd 123 (136)
T PF14781_consen 106 IPSPLVIVGGNCSIQGFD 123 (136)
T ss_pred CCCcEEEECceEEEEEeC
Confidence 223445545555555443
No 420
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=33.20 E-value=60 Score=31.50 Aligned_cols=46 Identities=24% Similarity=0.317 Sum_probs=32.1
Q ss_pred HHchhhHHHHHHhcCC-----h--hhHHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 002318 371 YLDMKEYAAALANCRD-----P--LQRDQVYLVQAEAAFATKDFHRAASFYAK 416 (936)
Q Consensus 371 ll~~~~f~~Al~~~~~-----~--~~~~~I~~~~~~~L~~~g~y~~Aa~~y~~ 416 (936)
.+++|+|++|.+..+. | .--.+....-|+.+|.+|+|++|+..|.+
T Consensus 20 ~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~r 72 (142)
T PF13512_consen 20 ALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDR 72 (142)
T ss_pred HHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 6778888888877552 2 22356666777788888888888776644
No 421
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=33.13 E-value=68 Score=33.03 Aligned_cols=153 Identities=13% Similarity=0.186 Sum_probs=69.1
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHhcC---CCChHHHHH-H----hcCcChHHHHHHHHHHHhhcccCchhHHHHHH
Q 002318 390 RDQVYLVQAEAAFATKDFHRAASFYAKINY---ILSFEEITL-K----FISVSEQDALRTFLLRKLDNLAKDDKCQITMI 461 (936)
Q Consensus 390 ~~~I~~~~~~~L~~~g~y~~Aa~~y~~~~~---~~~~E~v~l-k----Fl~~~~~~~L~~YL~~~l~~l~~~~~~~~~lL 461 (936)
-..-....|..++++|+|.+|++.|.+... ..++..-+. . +...++...=...+..-+..-+.++.. .-.
T Consensus 4 ~~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~--~~A 81 (203)
T PF13525_consen 4 TAEALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKA--DYA 81 (203)
T ss_dssp -HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTH--HHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcch--hhH
Confidence 345677889999999999999999998751 123333222 2 222333322222222222222322221 111
Q ss_pred HHHHHHHHHHHHhhhhcccchhhccchHHHHHHHHHHHHHHhcccccCCHHHHHHHHHHcCChhHHHHHHHhhhhHH-HH
Q 002318 462 STWATELYLDKINRLLLEDDTALENRSSEYQSIMREFRAFLSDCKDVLDEATTMKLLESYGRVEELVFFASLKEQHE-IV 540 (936)
Q Consensus 462 ~~Wl~ely~~~l~~~~~e~~~~~~~~~~~~~~~~~~l~~fl~~~~~~ld~~tv~~ll~~~g~~e~~l~~a~~~~dy~-~l 540 (936)
.-|+...+........ ..+.......+....|+.|+..+.+.--...+-..|.. +-+..-.++ .+
T Consensus 82 ~Y~~g~~~~~~~~~~~-----~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~---------l~~~la~~e~~i 147 (203)
T PF13525_consen 82 LYMLGLSYYKQIPGIL-----RSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLAE---------LRNRLAEHELYI 147 (203)
T ss_dssp HHHHHHHHHHHHHHHH------TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHH---------HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCccch-----hcccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHHH---------HHHHHHHHHHHH
Confidence 1222222322222210 00001123445677888888887653222222111111 111112222 36
Q ss_pred HHHHHhcccHHHHHHHHh
Q 002318 541 VHHYIQQGEAKKALQMLR 558 (936)
Q Consensus 541 l~~yi~~~~~~~AL~~L~ 558 (936)
..+|...|.|..|+.-..
T Consensus 148 a~~Y~~~~~y~aA~~r~~ 165 (203)
T PF13525_consen 148 ARFYYKRGKYKAAIIRFQ 165 (203)
T ss_dssp HHHHHCTT-HHHHHHHHH
T ss_pred HHHHHHcccHHHHHHHHH
Confidence 789999999999887654
No 422
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=33.08 E-value=5.1e+02 Score=33.59 Aligned_cols=53 Identities=17% Similarity=0.192 Sum_probs=33.0
Q ss_pred CceEEEEEecCCCCCCCCcceEEEEcCCCcEEEEEEecCCcccceeeEEe-eeCCC-CCceeeEEEE
Q 002318 110 GLVVNAVAWNRQQITEASTKEIILGTDTGQLHEMAVDEKDKREKYIKLLF-ELNEL-PEAFMGLQME 174 (936)
Q Consensus 110 g~~I~sVaw~~~~~~~~st~~iLiGt~~G~i~e~~i~~~~~~~~~~k~v~-~l~~~-~~~I~gi~~~ 174 (936)
+...+||+|.+. .+...||.++|.+..+.-... +|... ..+.. +..|++|.|.
T Consensus 198 t~~~Tav~WSpr------GKQl~iG~nnGt~vQy~P~le------ik~~ip~Pp~~e~yrvl~v~Wl 252 (1405)
T KOG3630|consen 198 TNSQTAVLWSPR------GKQLFIGRNNGTEVQYEPSLE------IKSEIPEPPVEENYRVLSVTWL 252 (1405)
T ss_pred ccceeeEEeccc------cceeeEecCCCeEEEeecccc------eeecccCCCcCCCcceeEEEEe
Confidence 456778888732 358899999998887754321 22211 12211 3668999997
No 423
>smart00036 CNH Domain found in NIK1-like kinases, mouse citron and yeast ROM1, ROM2. Unpublished observations.
Probab=33.07 E-value=1.7e+02 Score=32.26 Aligned_cols=68 Identities=19% Similarity=0.315 Sum_probs=0.0
Q ss_pred EEecCCCCCCCCcceEEEEcCCCcEEEEEEecCCcccceeeEEeeeCCCCCceeeEEEEeeccCCCceEEEEEECCCe-E
Q 002318 116 VAWNRQQITEASTKEIILGTDTGQLHEMAVDEKDKREKYIKLLFELNELPEAFMGLQMETASLSNGTRYYVMAVTPTR-L 194 (936)
Q Consensus 116 Vaw~~~~~~~~st~~iLiGt~~G~i~e~~i~~~~~~~~~~k~v~~l~~~~~~I~gi~~~~~~~~~~~~~~i~ast~~r-l 194 (936)
+-|+.+...+. ..+|+||++| ||-..+.... ..+..+.+. .+|+.+++. .+.+.+++.+...+ |
T Consensus 3 ~~~~~~~~~~~--~~lL~GTe~G-ly~~~~~~~~------~~~~kl~~~-~~v~q~~v~-----~~~~lLi~Lsgk~~~L 67 (302)
T smart00036 3 AKWNHPITCDG--KWLLVGTEEG-LYVLNISDQP------GTLEKLIGR-RSVTQIWVL-----EENNVLLMISGKKPQL 67 (302)
T ss_pred ceEccccccCC--cEEEEEeCCc-eEEEEcccCC------CCeEEecCc-CceEEEEEE-----hhhCEEEEEeCCcceE
Q ss_pred EEEe
Q 002318 195 YSFT 198 (936)
Q Consensus 195 y~f~ 198 (936)
|.+.
T Consensus 68 ~~~~ 71 (302)
T smart00036 68 YSHP 71 (302)
T ss_pred EEEE
No 424
>PF04641 Rtf2: Rtf2 RING-finger
Probab=33.03 E-value=24 Score=38.04 Aligned_cols=35 Identities=23% Similarity=0.402 Sum_probs=27.9
Q ss_pred cccccccchhhhhcccccccccccCCCCCCCCEEEE-cCCChhHHHhHHHHH
Q 002318 833 DEDCGVCRRKILVAGRDYRMARGYASVGPMAPFYVF-PCGHAFHAQCLIAHV 883 (936)
Q Consensus 833 ~~~C~~C~k~L~~~~~~~~~~~~~~~~~~~~~fvvF-pCgH~fH~~CL~~~~ 883 (936)
.-.|+++++.+.+ + .+||++ ||||+|=.+|+...-
T Consensus 113 ~~~CPvt~~~~~~-----~-----------~~fv~l~~cG~V~s~~alke~k 148 (260)
T PF04641_consen 113 RFICPVTGKEFNG-----K-----------HKFVYLRPCGCVFSEKALKELK 148 (260)
T ss_pred eeECCCCCcccCC-----c-----------eeEEEEcCCCCEeeHHHHHhhc
Confidence 4579999999966 3 266666 899999999998764
No 425
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=32.88 E-value=92 Score=33.45 Aligned_cols=48 Identities=23% Similarity=0.375 Sum_probs=37.3
Q ss_pred HHchhhHHHHHHhcCC-----h--hhHHHHHHHHHHHHHhcCCHHHHHHHHHHhc
Q 002318 371 YLDMKEYAAALANCRD-----P--LQRDQVYLVQAEAAFATKDFHRAASFYAKIN 418 (936)
Q Consensus 371 ll~~~~f~~Al~~~~~-----~--~~~~~I~~~~~~~L~~~g~y~~Aa~~y~~~~ 418 (936)
++..|+|..|.+..+. | .....-+.=.|+.+|.+|+|.+||..|....
T Consensus 151 ~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~ 205 (262)
T COG1729 151 LYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVV 205 (262)
T ss_pred HHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHH
Confidence 6666778888876542 2 2345677788999999999999999999875
No 426
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=32.78 E-value=73 Score=23.63 Aligned_cols=26 Identities=15% Similarity=0.052 Sum_probs=23.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhc
Q 002318 393 VYLVQAEAAFATKDFHRAASFYAKIN 418 (936)
Q Consensus 393 I~~~~~~~L~~~g~y~~Aa~~y~~~~ 418 (936)
+...+|..+.+.|++++|.+.|.+..
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l 28 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRAL 28 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 56778999999999999999999875
No 427
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=32.78 E-value=3.4e+02 Score=29.56 Aligned_cols=102 Identities=19% Similarity=0.148 Sum_probs=64.4
Q ss_pred eCCEEEEEecCCeEEEEeC-CCCCceeeEcCCCCCCccceeEEEeCCCCCeEEEEeecCCCccEEEEecCCCCceeccCC
Q 002318 30 GNDVIVLGTSKGWLIRHDF-GAGDSYDIDLSAGRPGEQSIHKVFVDPGGSHCIATIVGSGGAETFYTHAKWSKPRVLSKL 108 (936)
Q Consensus 30 ~~n~l~l~~~~g~l~ridl-~~~~~~~~~l~~~~~~~~~i~~i~lDp~G~hlli~~~~~~~g~~~Y~~~~~~k~k~L~kl 108 (936)
++..++.++..+++--||+ .-.+...|+=. -...|+.+-..|+-.|.|++.. ++|.+-.+....+|. ++..+
T Consensus 182 Hdgnqv~tt~d~tl~~~D~RT~~~~~sI~dA----Hgq~vrdlDfNpnkq~~lvt~g--DdgyvriWD~R~tk~-pv~el 254 (370)
T KOG1007|consen 182 HDGNQVATTSDSTLQFWDLRTMKKNNSIEDA----HGQRVRDLDFNPNKQHILVTCG--DDGYVRIWDTRKTKF-PVQEL 254 (370)
T ss_pred CccceEEEeCCCcEEEEEccchhhhcchhhh----hcceeeeccCCCCceEEEEEcC--CCccEEEEeccCCCc-ccccc
Confidence 3456677778888888888 33332223211 1357888999999999888754 367666676666652 33334
Q ss_pred CC--ceEEEEEecCCCCCCCCcceEEEEcCCCcEEEE
Q 002318 109 KG--LVVNAVAWNRQQITEASTKEIILGTDTGQLHEM 143 (936)
Q Consensus 109 kg--~~I~sVaw~~~~~~~~st~~iLiGt~~G~i~e~ 143 (936)
.| +=|=+|-+|+.. ..=||-|+++..+...
T Consensus 255 ~~HsHWvW~VRfn~~h-----dqLiLs~~SDs~V~Ls 286 (370)
T KOG1007|consen 255 PGHSHWVWAVRFNPEH-----DQLILSGGSDSAVNLS 286 (370)
T ss_pred CCCceEEEEEEecCcc-----ceEEEecCCCceeEEE
Confidence 44 678899999543 3466777777555443
No 428
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=32.67 E-value=1.3e+02 Score=30.29 Aligned_cols=55 Identities=15% Similarity=0.075 Sum_probs=38.7
Q ss_pred hhHHHHHHhcCCh---hhHHHHHHHHHHHHHhcCCHHHHHHHHHHhc-CCCChHHHHHH
Q 002318 375 KEYAAALANCRDP---LQRDQVYLVQAEAAFATKDFHRAASFYAKIN-YILSFEEITLK 429 (936)
Q Consensus 375 ~~f~~Al~~~~~~---~~~~~I~~~~~~~L~~~g~y~~Aa~~y~~~~-~~~~~E~v~lk 429 (936)
.+.+..++-+++. ......+...|+|+.+-|++++|.+.|.++. .......++-+
T Consensus 17 ~~Le~elk~~~~n~~kesir~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~ 75 (177)
T PF10602_consen 17 EKLEAELKDAKSNLGKESIRMALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDM 75 (177)
T ss_pred HHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHH
Confidence 4555666665543 3456677799999999999999999999976 22344544443
No 429
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=32.64 E-value=9.2e+02 Score=29.52 Aligned_cols=116 Identities=9% Similarity=0.045 Sum_probs=65.5
Q ss_pred ceeEEEEeCC--EEEEEecCCeEEEEeCCCCCceeeEcCCCCCCccceeEEEe---CCCCCeEEEEeecCCCccEEEEec
Q 002318 23 VITCMSAGND--VIVLGTSKGWLIRHDFGAGDSYDIDLSAGRPGEQSIHKVFV---DPGGSHCIATIVGSGGAETFYTHA 97 (936)
Q Consensus 23 ~i~~l~v~~n--~l~l~~~~g~l~ridl~~~~~~~~~l~~~~~~~~~i~~i~l---Dp~G~hlli~~~~~~~g~~~Y~~~ 97 (936)
.||.|+.+.+ .|.-+.++.+.-.+....+...++..... ..--+=||- .|.++...-++. |-.+-.+..
T Consensus 574 TVT~l~FSpdg~~LLsvsRDRt~sl~~~~~~~~~e~~fa~~---k~HtRIIWdcsW~pde~~FaTaSR---DK~VkVW~~ 647 (764)
T KOG1063|consen 574 TVTRLAFSPDGRYLLSVSRDRTVSLYEVQEDIKDEFRFACL---KAHTRIIWDCSWSPDEKYFATASR---DKKVKVWEE 647 (764)
T ss_pred EEEEEEECCCCcEEEEeecCceEEeeeeecccchhhhhccc---cccceEEEEcccCcccceeEEecC---CceEEEEec
Confidence 4788888765 44444455555555553333333332210 111122443 577777666666 666655544
Q ss_pred CCCCcee-----ccCCCCceEEEEEecCCCCCCCCcceEEEEcCCCcEEEEEEe
Q 002318 98 KWSKPRV-----LSKLKGLVVNAVAWNRQQITEASTKEIILGTDTGQLHEMAVD 146 (936)
Q Consensus 98 ~~~k~k~-----L~klkg~~I~sVaw~~~~~~~~st~~iLiGt~~G~i~e~~i~ 146 (936)
.....+- ..+ .+..|++|+|.+.... ...+-+-+|...|.|+.....
T Consensus 648 ~~~~d~~i~~~a~~~-~~~aVTAv~~~~~~~~-e~~~~vavGle~GeI~l~~~~ 699 (764)
T KOG1063|consen 648 PDLRDKYISRFACLK-FSLAVTAVAYLPVDHN-EKGDVVAVGLEKGEIVLWRRK 699 (764)
T ss_pred cCchhhhhhhhchhc-cCCceeeEEeeccccc-cccceEEEEecccEEEEEecc
Confidence 3331122 223 4679999999954433 244577899999999988764
No 430
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=32.44 E-value=62 Score=31.05 Aligned_cols=35 Identities=17% Similarity=0.192 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHhcCCCChHH
Q 002318 391 DQVYLVQAEAAFATKDFHRAASFYAKINYILSFEE 425 (936)
Q Consensus 391 ~~I~~~~~~~L~~~g~y~~Aa~~y~~~~~~~~~E~ 425 (936)
..+..+.++.+...|+|++|...+.+.....|+.+
T Consensus 62 ~~~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~~E 96 (146)
T PF03704_consen 62 LDALERLAEALLEAGDYEEALRLLQRALALDPYDE 96 (146)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred HHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCH
Confidence 34566677777777777777777766543345543
No 431
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=32.43 E-value=3.2e+02 Score=31.10 Aligned_cols=80 Identities=10% Similarity=-0.026 Sum_probs=52.0
Q ss_pred CCEEEEEe-cCCeEEEEeC-CCCCceeeEcCCCCCCccceeEEEeCCCCCeEEEEeecCCCccEEEEecCCCC-ceeccC
Q 002318 31 NDVIVLGT-SKGWLIRHDF-GAGDSYDIDLSAGRPGEQSIHKVFVDPGGSHCIATIVGSGGAETFYTHAKWSK-PRVLSK 107 (936)
Q Consensus 31 ~n~l~l~~-~~g~l~ridl-~~~~~~~~~l~~~~~~~~~i~~i~lDp~G~hlli~~~~~~~g~~~Y~~~~~~k-~k~L~k 107 (936)
.|++++.. .+|.|-.||. ....+.+|+... ..-..+...|.|+++.++.. +|...-+...+.+ .+.+.
T Consensus 5 ~~l~~V~~~~~~~v~viD~~t~~~~~~i~~~~-----~~h~~~~~s~Dgr~~yv~~r---dg~vsviD~~~~~~v~~i~- 75 (369)
T PF02239_consen 5 GNLFYVVERGSGSVAVIDGATNKVVARIPTGG-----APHAGLKFSPDGRYLYVANR---DGTVSVIDLATGKVVATIK- 75 (369)
T ss_dssp GGEEEEEEGGGTEEEEEETTT-SEEEEEE-ST-----TEEEEEE-TT-SSEEEEEET---TSEEEEEETTSSSEEEEEE-
T ss_pred ccEEEEEecCCCEEEEEECCCCeEEEEEcCCC-----CceeEEEecCCCCEEEEEcC---CCeEEEEECCcccEEEEEe-
Confidence 35666555 5799999999 666667776541 22234667899999999987 8888888876665 33443
Q ss_pred CCCceEEEEEecC
Q 002318 108 LKGLVVNAVAWNR 120 (936)
Q Consensus 108 lkg~~I~sVaw~~ 120 (936)
-|..-.+|++.+
T Consensus 76 -~G~~~~~i~~s~ 87 (369)
T PF02239_consen 76 -VGGNPRGIAVSP 87 (369)
T ss_dssp --SSEEEEEEE--
T ss_pred -cCCCcceEEEcC
Confidence 467788888873
No 432
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=32.39 E-value=6.5e+02 Score=26.91 Aligned_cols=118 Identities=17% Similarity=0.276 Sum_probs=62.6
Q ss_pred cceeEEEeCCCCCeEEEEeecCCCccEEEEecCCCCceeccCCCC-ceEEEEEecCCCCCCCCcceEEEEcC-CCcEEEE
Q 002318 66 QSIHKVFVDPGGSHCIATIVGSGGAETFYTHAKWSKPRVLSKLKG-LVVNAVAWNRQQITEASTKEIILGTD-TGQLHEM 143 (936)
Q Consensus 66 ~~i~~i~lDp~G~hlli~~~~~~~g~~~Y~~~~~~k~k~L~klkg-~~I~sVaw~~~~~~~~st~~iLiGt~-~G~i~e~ 143 (936)
.-+..|-.||...+|+..++. .+..|-+..+-.-.+.+ .+.| .+.+.|++.. .+.++|... ++.|+..
T Consensus 22 ~e~SGLTy~pd~~tLfaV~d~--~~~i~els~~G~vlr~i-~l~g~~D~EgI~y~g-------~~~~vl~~Er~~~L~~~ 91 (248)
T PF06977_consen 22 DELSGLTYNPDTGTLFAVQDE--PGEIYELSLDGKVLRRI-PLDGFGDYEGITYLG-------NGRYVLSEERDQRLYIF 91 (248)
T ss_dssp S-EEEEEEETTTTEEEEEETT--TTEEEEEETT--EEEEE-E-SS-SSEEEEEE-S-------TTEEEEEETTTTEEEEE
T ss_pred CCccccEEcCCCCeEEEEECC--CCEEEEEcCCCCEEEEE-eCCCCCCceeEEEEC-------CCEEEEEEcCCCcEEEE
Confidence 348999999998888888882 45665555432222222 1334 5788888862 247888775 6889999
Q ss_pred EEecCCcc-c-ceeeEEeeeCC---CCCceeeEEEEeeccCCCceEEEEEEC--CCeEEEEec
Q 002318 144 AVDEKDKR-E-KYIKLLFELNE---LPEAFMGLQMETASLSNGTRYYVMAVT--PTRLYSFTG 199 (936)
Q Consensus 144 ~i~~~~~~-~-~~~k~v~~l~~---~~~~I~gi~~~~~~~~~~~~~~i~ast--~~rly~f~~ 199 (936)
.++...+. . ..++. +.+.- .-..+.||.|.. ...+++ +|-- |.+||.+.+
T Consensus 92 ~~~~~~~~~~~~~~~~-~~l~~~~~~N~G~EGla~D~----~~~~L~-v~kE~~P~~l~~~~~ 148 (248)
T PF06977_consen 92 TIDDDTTSLDRADVQK-ISLGFPNKGNKGFEGLAYDP----KTNRLF-VAKERKPKRLYEVNG 148 (248)
T ss_dssp EE----TT--EEEEEE-EE---S---SS--EEEEEET----TTTEEE-EEEESSSEEEEEEES
T ss_pred EEeccccccchhhceE-EecccccCCCcceEEEEEcC----CCCEEE-EEeCCCChhhEEEcc
Confidence 98554211 1 11222 23321 112389999984 222344 3332 667777765
No 433
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=32.37 E-value=80 Score=36.26 Aligned_cols=73 Identities=19% Similarity=0.215 Sum_probs=52.9
Q ss_pred hhHHHHHHchhhHHHHHHhcCCh----hhHHHHHHHHHHHHHhcCCHHHHHHHHHHhc-----CCCChHHHHHHhcCcCh
Q 002318 365 RDMWKVYLDMKEYAAALANCRDP----LQRDQVYLVQAEAAFATKDFHRAASFYAKIN-----YILSFEEITLKFISVSE 435 (936)
Q Consensus 365 ~~~W~~ll~~~~f~~Al~~~~~~----~~~~~I~~~~~~~L~~~g~y~~Aa~~y~~~~-----~~~~~E~v~lkFl~~~~ 435 (936)
-...++++..++-.+|+++.... .+--.++..+|++|+.+|+|+.|.++..++. .-..|...+.-++..++
T Consensus 204 ~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~k~~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d 283 (395)
T PF09295_consen 204 VLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLLSKKKYELALEIAKKAVELSPSEFETWYQLAECYIQLGD 283 (395)
T ss_pred HHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCC
Confidence 34577788888888999886532 1226788899999999999999988887764 12355566666777766
Q ss_pred HH
Q 002318 436 QD 437 (936)
Q Consensus 436 ~~ 437 (936)
.+
T Consensus 284 ~e 285 (395)
T PF09295_consen 284 FE 285 (395)
T ss_pred HH
Confidence 54
No 434
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=31.97 E-value=66 Score=26.11 Aligned_cols=28 Identities=14% Similarity=0.345 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHhc
Q 002318 391 DQVYLVQAEAAFATKDFHRAASFYAKIN 418 (936)
Q Consensus 391 ~~I~~~~~~~L~~~g~y~~Aa~~y~~~~ 418 (936)
..+....|..++..|+|++|...|.+..
T Consensus 3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai 30 (69)
T PF13414_consen 3 AEAWYNLGQIYFQQGDYEEAIEYFEKAI 30 (69)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4577889999999999999999999986
No 435
>PRK05423 hypothetical protein; Provisional
Probab=31.86 E-value=1.1e+02 Score=27.09 Aligned_cols=38 Identities=13% Similarity=0.344 Sum_probs=30.3
Q ss_pred cccccccCcCCCCcchhHHHHHHHHHHHHHHHHHHHHH
Q 002318 766 LKIEDILPFFPDFALIDDFKEAICSSLDDYNKQIEQLK 803 (936)
Q Consensus 766 L~i~diL~~~p~~~~I~~~Kd~I~~~L~~y~~~i~~l~ 803 (936)
+.+..++.++.+++++++++..|..+-.+|...+...-
T Consensus 43 lLLdNL~~YIk~~Ms~e~i~~II~nMr~DYEdRVDDyi 80 (104)
T PRK05423 43 LLLDNLSDYIKPGMSIEEIQGIIANMKSDYEDRVDDYI 80 (104)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHhhHHHhhHHHH
Confidence 33445777888899999999999999999988776543
No 436
>PF11789 zf-Nse: Zinc-finger of the MIZ type in Nse subunit; PDB: 2YU4_A 3HTK_C.
Probab=31.84 E-value=19 Score=28.99 Aligned_cols=33 Identities=18% Similarity=0.461 Sum_probs=24.4
Q ss_pred cccccccchhhhhcccccccccccCCCCCCCCEEEEcCCChhHHHhHHHHH
Q 002318 833 DEDCGVCRRKILVAGRDYRMARGYASVGPMAPFYVFPCGHAFHAQCLIAHV 883 (936)
Q Consensus 833 ~~~C~~C~k~L~~~~~~~~~~~~~~~~~~~~~fvvFpCgH~fH~~CL~~~~ 883 (936)
+.+|.+..+++.. |..=-.|||.|=++.+..++
T Consensus 11 ~~~CPiT~~~~~~------------------PV~s~~C~H~fek~aI~~~i 43 (57)
T PF11789_consen 11 SLKCPITLQPFED------------------PVKSKKCGHTFEKEAILQYI 43 (57)
T ss_dssp -SB-TTTSSB-SS------------------EEEESSS--EEEHHHHHHHC
T ss_pred ccCCCCcCChhhC------------------CcCcCCCCCeecHHHHHHHH
Confidence 5689999998877 67777999999999999888
No 437
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=31.62 E-value=5.3e+02 Score=30.34 Aligned_cols=46 Identities=20% Similarity=0.232 Sum_probs=29.0
Q ss_pred cCHHHHHHHhhcc-CCCHHHHHHHHHHHHHHHhhcccCCChHhHHHHHHHHHhc
Q 002318 710 VDPELAMAEADKV-EDDEDLRKKLWLMVAKHVIEQEKGTKRENIRKAIAFLKET 762 (936)
Q Consensus 710 ~di~lA~~~a~~~-~~d~~~~kkLWl~ll~~~i~~~~~~~~~~i~~~l~~L~~~ 762 (936)
.|+..|...+.+. +-|+. ...-+..+++.-+.. +++.+++++.+++
T Consensus 517 ~d~~~a~~Ll~KA~e~Dpk-ce~A~~tlaq~~lQ~------~~i~eAielFEks 563 (606)
T KOG0547|consen 517 EDINQAENLLRKAIELDPK-CEQAYETLAQFELQR------GKIDEAIELFEKS 563 (606)
T ss_pred hhHHHHHHHHHHHHccCch-HHHHHHHHHHHHHHH------hhHHHHHHHHHHH
Confidence 6777777776554 22432 223567777777765 5788888877665
No 438
>PF02318 FYVE_2: FYVE-type zinc finger; InterPro: IPR003315 This entry represents the zinc-binding domain found in rabphilin Rab3A. The small G protein Rab3A plays an important role in the regulation of neurotransmitter release. The crystal structure of the small G protein Rab3A complexed with the effector domain of rabphilin-3A shows that the effector domain of rabphilin-3A contacts Rab3A in two distinct areas. The first interface involves the Rab3A switch I and switch II regions, which are sensitive to the nucleotide-binding state of Rab3A. The second interface consists of a deep pocket in Rab3A that interacts with a SGAWFF structural element of rabphilin-3A. Sequence and structure analysis, and biochemical data suggest that this pocket, or Rab complementarity-determining region (RabCDR), establishes a specific interaction between each Rab protein and its effectors. It has been suggested that RabCDRs could be major determinants of effector specificity during vesicle trafficking and fusion [].; GO: 0008270 zinc ion binding, 0017137 Rab GTPase binding, 0006886 intracellular protein transport; PDB: 2CSZ_A 2ZET_C 1ZBD_B 3BC1_B 2CJS_C 2A20_A.
Probab=31.42 E-value=53 Score=30.74 Aligned_cols=36 Identities=17% Similarity=0.349 Sum_probs=23.2
Q ss_pred ccccccccchhhhhcccccccccccCCCCCCCCEEEEcCCChhHHHhHHH
Q 002318 832 RDEDCGVCRRKILVAGRDYRMARGYASVGPMAPFYVFPCGHAFHAQCLIA 881 (936)
Q Consensus 832 ~~~~C~~C~k~L~~~~~~~~~~~~~~~~~~~~~fvvFpCgH~fH~~CL~~ 881 (936)
....|..|++++..... + ..+-.-|+|.+-.+|-..
T Consensus 53 ~~~~C~~C~~~fg~l~~--~------------~~~C~~C~~~VC~~C~~~ 88 (118)
T PF02318_consen 53 GERHCARCGKPFGFLFN--R------------GRVCVDCKHRVCKKCGVY 88 (118)
T ss_dssp CCSB-TTTS-BCSCTST--T------------CEEETTTTEEEETTSEEE
T ss_pred CCcchhhhCCcccccCC--C------------CCcCCcCCccccCccCCc
Confidence 46789999998543211 2 567777998888888654
No 439
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=31.19 E-value=54 Score=37.12 Aligned_cols=49 Identities=14% Similarity=0.318 Sum_probs=39.4
Q ss_pred HHHchhhHHHHHHhcCChh----hHHHHHHHHHHHHHhcCCHHHHHHHHHHhc
Q 002318 370 VYLDMKEYAAALANCRDPL----QRDQVYLVQAEAAFATKDFHRAASFYAKIN 418 (936)
Q Consensus 370 ~ll~~~~f~~Al~~~~~~~----~~~~I~~~~~~~L~~~g~y~~Aa~~y~~~~ 418 (936)
.|+..|+|++|+..++... .-...+...|..++..|+|++|...|.+..
T Consensus 45 ~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg~~~eA~~~~~~al 97 (356)
T PLN03088 45 ANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEEYQTAKAALEKGA 97 (356)
T ss_pred HHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 4788899999999876422 234567788999999999999999988765
No 440
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=31.12 E-value=8.7e+02 Score=27.98 Aligned_cols=124 Identities=12% Similarity=0.043 Sum_probs=67.3
Q ss_pred CCEEEEEecCCeEEEEeCCCCCc-eeeEcCCCCCCccceeEEEeCCCCCeEEEEeecCCCccEEEEecCCC-----Ccee
Q 002318 31 NDVIVLGTSKGWLIRHDFGAGDS-YDIDLSAGRPGEQSIHKVFVDPGGSHCIATIVGSGGAETFYTHAKWS-----KPRV 104 (936)
Q Consensus 31 ~n~l~l~~~~g~l~ridl~~~~~-~~~~l~~~~~~~~~i~~i~lDp~G~hlli~~~~~~~g~~~Y~~~~~~-----k~k~ 104 (936)
++-+++.-..|.++|-+-..... +.+..|. ...+..+-.++.|.-+ +.+. .|..+.....-. ....
T Consensus 249 dG~~~~vg~~G~~~~s~d~G~~~W~~~~~~~----~~~l~~v~~~~dg~l~-l~g~---~G~l~~S~d~G~~~~~~~f~~ 320 (398)
T PLN00033 249 DGDYVAVSSRGNFYLTWEPGQPYWQPHNRAS----ARRIQNMGWRADGGLW-LLTR---GGGLYVSKGTGLTEEDFDFEE 320 (398)
T ss_pred CCCEEEEECCccEEEecCCCCcceEEecCCC----ccceeeeeEcCCCCEE-EEeC---CceEEEecCCCCcccccceee
Confidence 33344444556777755422221 3344442 3567788777877655 4445 477655432221 2222
Q ss_pred ccC-CCCceEEEEEecCCCCCCCCcceEEEEcCCCcEEEEEEecCCcccceeeEEeeeCCCCCceeeEEEE
Q 002318 105 LSK-LKGLVVNAVAWNRQQITEASTKEIILGTDTGQLHEMAVDEKDKREKYIKLLFELNELPEAFMGLQME 174 (936)
Q Consensus 105 L~k-lkg~~I~sVaw~~~~~~~~st~~iLiGt~~G~i~e~~i~~~~~~~~~~k~v~~l~~~~~~I~gi~~~ 174 (936)
+.. -.+..+.+|++.+ .+.+++.+..|.++... +.+ +.|+.+-.-+..++++..|.+.
T Consensus 321 ~~~~~~~~~l~~v~~~~-------d~~~~a~G~~G~v~~s~-D~G----~tW~~~~~~~~~~~~ly~v~f~ 379 (398)
T PLN00033 321 ADIKSRGFGILDVGYRS-------KKEAWAAGGSGILLRST-DGG----KSWKRDKGADNIAANLYSVKFF 379 (398)
T ss_pred cccCCCCcceEEEEEcC-------CCcEEEEECCCcEEEeC-CCC----cceeEccccCCCCcceeEEEEc
Confidence 221 1345689999873 34788888999888764 332 2344432122334667777774
No 441
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=31.07 E-value=7.9e+02 Score=27.46 Aligned_cols=59 Identities=15% Similarity=0.063 Sum_probs=46.0
Q ss_pred HHHHchhhHHHHHHhcC----C----hhhHHHHHHHHHHHHHhcCCHHHHHHHHHHhcCCCChHHHH
Q 002318 369 KVYLDMKEYAAALANCR----D----PLQRDQVYLVQAEAAFATKDFHRAASFYAKINYILSFEEIT 427 (936)
Q Consensus 369 ~~ll~~~~f~~Al~~~~----~----~~~~~~I~~~~~~~L~~~g~y~~Aa~~y~~~~~~~~~E~v~ 427 (936)
++|-.+|.-|.|+.+=+ + ..+|......-|..+...|=|+.|-.+|....+...|.+=+
T Consensus 77 nLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DRAE~~f~~L~de~efa~~A 143 (389)
T COG2956 77 NLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDRAEDIFNQLVDEGEFAEGA 143 (389)
T ss_pred HHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhcchhhhHHH
Confidence 34677899999999844 2 35889999999999999999999999998876334444433
No 442
>PF07649 C1_3: C1-like domain; InterPro: IPR011424 This short domain is rich in cysteines and histidines. The pattern of conservation is similar to that found in IPR002219 from INTERPRO. C1 domains are protein kinase C-like zinc finger structures. Diacylglycerol (DAG) kinases (DGKs) have a two or three commonly conserved cysteine-rich C1 domains []. DGKs modulate the balance between the two signaling lipids, DAG and phosphatidic acid (PA), by phosphorylating DAG to yield PA []. The PKD (protein kinase D) family are novel DAG receptors. They have twin C1 domains, designated C1a and C1b, which bind DAG or phorbol esters. Individual C1 domains differ in ligand-binding activity and selectivity []. ; GO: 0047134 protein-disulfide reductase activity, 0055114 oxidation-reduction process; PDB: 1V5N_A.
Probab=30.97 E-value=37 Score=23.21 Aligned_cols=28 Identities=29% Similarity=0.660 Sum_probs=10.8
Q ss_pred cccccchhhhhcccccccccccCCCCCCCCEEE-EcCCChhHHHhH
Q 002318 835 DCGVCRRKILVAGRDYRMARGYASVGPMAPFYV-FPCGHAFHAQCL 879 (936)
Q Consensus 835 ~C~~C~k~L~~~~~~~~~~~~~~~~~~~~~fvv-FpCgH~fH~~CL 879 (936)
.|..|++++.+ . .+|. -.|.-.+|..|.
T Consensus 2 ~C~~C~~~~~~-----~------------~~Y~C~~Cdf~lH~~Ca 30 (30)
T PF07649_consen 2 RCDACGKPIDG-----G------------WFYRCSECDFDLHEECA 30 (30)
T ss_dssp --TTTS----S-------------------EEE-TTT-----HHHH
T ss_pred cCCcCCCcCCC-----C------------ceEECccCCCccChhcC
Confidence 69999999887 2 3333 359999999984
No 443
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=30.53 E-value=1.5e+02 Score=36.19 Aligned_cols=66 Identities=11% Similarity=0.068 Sum_probs=48.9
Q ss_pred CceeEEEEeCC--EEEEEecCCeEEEEeC-CCCCceeeEcCCCCCCccceeEEEeCCCCCeEEEEeecCCCccEEEE
Q 002318 22 GVITCMSAGND--VIVLGTSKGWLIRHDF-GAGDSYDIDLSAGRPGEQSIHKVFVDPGGSHCIATIVGSGGAETFYT 95 (936)
Q Consensus 22 ~~i~~l~v~~n--~l~l~~~~g~l~ridl-~~~~~~~~~l~~~~~~~~~i~~i~lDp~G~hlli~~~~~~~g~~~Y~ 95 (936)
+.|++++++.+ .|+-|-..|.|..||+ +...+..+.=+ .+.|..+-+...|.+|+++.. +-.+-.+
T Consensus 578 ~~V~al~~Sp~Gr~LaSg~ed~~I~iWDl~~~~~v~~l~~H-----t~ti~SlsFS~dg~vLasgg~---DnsV~lW 646 (707)
T KOG0263|consen 578 GPVTALAFSPCGRYLASGDEDGLIKIWDLANGSLVKQLKGH-----TGTIYSLSFSRDGNVLASGGA---DNSVRLW 646 (707)
T ss_pred CceEEEEEcCCCceEeecccCCcEEEEEcCCCcchhhhhcc-----cCceeEEEEecCCCEEEecCC---CCeEEEE
Confidence 35888888765 6666668899999999 77777655444 468899999999999988765 4444444
No 444
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=30.52 E-value=5.3e+02 Score=30.63 Aligned_cols=134 Identities=19% Similarity=0.271 Sum_probs=75.5
Q ss_pred EEEEeCCCCCceeeEcCCCCCCccceeEEEeCCCCCe-EEEEeecCCCccEEEEec-CCCCceeccCCCCceEEEEEecC
Q 002318 43 LIRHDFGAGDSYDIDLSAGRPGEQSIHKVFVDPGGSH-CIATIVGSGGAETFYTHA-KWSKPRVLSKLKGLVVNAVAWNR 120 (936)
Q Consensus 43 l~ridl~~~~~~~~~l~~~~~~~~~i~~i~lDp~G~h-lli~~~~~~~g~~~Y~~~-~~~k~k~L~klkg~~I~sVaw~~ 120 (936)
|+||+-..-.|+.+++. +.|...-=+|.|.- ++|+.+...+.-.||--. ...+++.++++--.....|-|.|
T Consensus 429 IfrireKdIpve~velk------e~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~~~~~lVk~~dk~~~N~vfwsP 502 (698)
T KOG2314|consen 429 IFRIREKDIPVEVVELK------ESVIAFAWEPHGDKFAVISGNTVKNTVSFYAVETNIKKPSLVKELDKKFANTVFWSP 502 (698)
T ss_pred EEEeeccCCCceeeecc------hheeeeeeccCCCeEEEEEccccccceeEEEeecCCCchhhhhhhcccccceEEEcC
Confidence 55555422223334442 56666666899876 555554212233456443 66677777777667899999994
Q ss_pred CCCCCCCcceEEEE---cCCCcEEEEEEecCCcccceeeEEeeeCCCCCceeeEEEEeeccCCCceEEEEEEC-------
Q 002318 121 QQITEASTKEIILG---TDTGQLHEMAVDEKDKREKYIKLLFELNELPEAFMGLQMETASLSNGTRYYVMAVT------- 190 (936)
Q Consensus 121 ~~~~~~st~~iLiG---t~~G~i~e~~i~~~~~~~~~~k~v~~l~~~~~~I~gi~~~~~~~~~~~~~~i~ast------- 190 (936)
. .+=+++| +..|.++.+..+.. .++.+ ..++- ..-+.+.|.. ..|+++-.+|
T Consensus 503 -k-----G~fvvva~l~s~~g~l~F~D~~~a-----~~k~~-~~~eh-~~at~veWDP-----tGRYvvT~ss~wrhk~d 564 (698)
T KOG2314|consen 503 -K-----GRFVVVAALVSRRGDLEFYDTDYA-----DLKDT-ASPEH-FAATEVEWDP-----TGRYVVTSSSSWRHKVD 564 (698)
T ss_pred -C-----CcEEEEEEecccccceEEEecchh-----hhhhc-cCccc-cccccceECC-----CCCEEEEeeehhhhccc
Confidence 2 1234444 34677877766532 13332 33331 1257788873 2366665555
Q ss_pred -CCeEEEEecC
Q 002318 191 -PTRLYSFTGF 200 (936)
Q Consensus 191 -~~rly~f~~~ 200 (936)
+=|||.|.|+
T Consensus 565 ~GYri~tfqGr 575 (698)
T KOG2314|consen 565 NGYRIFTFQGR 575 (698)
T ss_pred cceEEEEeecH
Confidence 2377877774
No 445
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=30.35 E-value=8.9e+02 Score=31.09 Aligned_cols=114 Identities=13% Similarity=0.134 Sum_probs=61.3
Q ss_pred HHHHHHHhcccHHHHHHHHhCC----CCchhhHHhhHHHHHhHChHHHHHHHHc-------cCCC-CCCcchhHhhhcCC
Q 002318 539 IVVHHYIQQGEAKKALQMLRKP----AVPIDLQYKFAPDLIMLDAYETVESWMT-------TNNL-NPRKLIPAMMRYSS 606 (936)
Q Consensus 539 ~ll~~yi~~~~~~~AL~~L~~~----~d~~~li~k~~~~Ll~~~p~~ti~ll~~-------~~~l-d~~~li~~L~~~~~ 606 (936)
.+..+|-..|++++|..++.+. ++....+-.||-.+-..+-+++.++..+ .... +...+.+-+..+.+
T Consensus 121 ~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae~dL~KA~~m~~KAV~~~i~~kq~~~~~e~W~k~~~~~~ 200 (906)
T PRK14720 121 TLAEAYAKLNENKKLKGVWERLVKADRDNPEIVKKLATSYEEEDKEKAITYLKKAIYRFIKKKQYVGIEEIWSKLVHYNS 200 (906)
T ss_pred HHHHHHHHcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHhcCc
Confidence 4777888889999888887653 2224555566655544455555444432 2211 11223344444433
Q ss_pred CCCCCCChHHHHHHHHHHHhhcCCCCHhHHHHHHHHhhcCC---ChHHHHHHHHHh
Q 002318 607 EPHAKNETHEVIKYLEFCVHRLHNEDPGVHNLLLSLYAKQE---DDSALLRFLQCK 659 (936)
Q Consensus 607 ~~~~~~~~~~~~~YLe~li~~~~~~~~~~hn~ll~Ly~~~~---~~~~Ll~fL~~~ 659 (936)
. .-+...++++.+....+ ....+.++.-||-.+. +-.+.+.+|+..
T Consensus 201 ~-----d~d~f~~i~~ki~~~~~--~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~i 249 (906)
T PRK14720 201 D-----DFDFFLRIERKVLGHRE--FTRLVGLLEDLYEPYKALEDWDEVIYILKKI 249 (906)
T ss_pred c-----cchHHHHHHHHHHhhhc--cchhHHHHHHHHHHHhhhhhhhHHHHHHHHH
Confidence 1 23456677777665433 2456666666665543 223566666654
No 446
>COG5574 PEX10 RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=30.22 E-value=25 Score=37.23 Aligned_cols=32 Identities=34% Similarity=0.662 Sum_probs=25.9
Q ss_pred ccccccccchhhhhcccccccccccCCCCCCCCEEEEcCCChhHHHhHHHH
Q 002318 832 RDEDCGVCRRKILVAGRDYRMARGYASVGPMAPFYVFPCGHAFHAQCLIAH 882 (936)
Q Consensus 832 ~~~~C~~C~k~L~~~~~~~~~~~~~~~~~~~~~fvvFpCgH~fH~~CL~~~ 882 (936)
.+.+|.+|-..... +..-||||.|--.||...
T Consensus 214 ~d~kC~lC~e~~~~-------------------ps~t~CgHlFC~~Cl~~~ 245 (271)
T COG5574 214 ADYKCFLCLEEPEV-------------------PSCTPCGHLFCLSCLLIS 245 (271)
T ss_pred cccceeeeecccCC-------------------cccccccchhhHHHHHHH
Confidence 47889999876544 456699999999999873
No 447
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=30.18 E-value=59 Score=26.68 Aligned_cols=49 Identities=18% Similarity=0.311 Sum_probs=37.1
Q ss_pred HHHchhhHHHHHHhcCCh----hhHHHHHHHHHHHHHhcCCHHHHHHHHHHhc
Q 002318 370 VYLDMKEYAAALANCRDP----LQRDQVYLVQAEAAFATKDFHRAASFYAKIN 418 (936)
Q Consensus 370 ~ll~~~~f~~Al~~~~~~----~~~~~I~~~~~~~L~~~g~y~~Aa~~y~~~~ 418 (936)
++...+++++|++..+.. .....+....|..++..|++++|...+.+..
T Consensus 43 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 95 (100)
T cd00189 43 AYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKLGKYEEALEAYEKAL 95 (100)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 366679999999886531 1223677888899999999999998887764
No 448
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=30.06 E-value=96 Score=21.16 Aligned_cols=27 Identities=22% Similarity=0.438 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHhc
Q 002318 392 QVYLVQAEAAFATKDFHRAASFYAKIN 418 (936)
Q Consensus 392 ~I~~~~~~~L~~~g~y~~Aa~~y~~~~ 418 (936)
.+....|.-++..|+|++|...|.+..
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al 28 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRAL 28 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHH
Confidence 355677888999999999999998865
No 449
>PRK14574 hmsH outer membrane protein; Provisional
Probab=30.05 E-value=1.3e+03 Score=29.54 Aligned_cols=86 Identities=15% Similarity=0.046 Sum_probs=45.8
Q ss_pred hhHHHHHHchhhHHHHHHhcCC-----hhhHHHHHHHHHHHHHhcCCHHHHHHHHHHhcCCC---ChHHH--HHHhcCcC
Q 002318 365 RDMWKVYLDMKEYAAALANCRD-----PLQRDQVYLVQAEAAFATKDFHRAASFYAKINYIL---SFEEI--TLKFISVS 434 (936)
Q Consensus 365 ~~~W~~ll~~~~f~~Al~~~~~-----~~~~~~I~~~~~~~L~~~g~y~~Aa~~y~~~~~~~---~~E~v--~lkFl~~~ 434 (936)
+...-+...+|+|+.|++..+. |.....|. .++..+...|++++|...+.+..... ..+.. +..+...+
T Consensus 38 y~~aii~~r~Gd~~~Al~~L~qaL~~~P~~~~av~-dll~l~~~~G~~~~A~~~~eka~~p~n~~~~~llalA~ly~~~g 116 (822)
T PRK14574 38 YDSLIIRARAGDTAPVLDYLQEESKAGPLQSGQVD-DWLQIAGWAGRDQEVIDVYERYQSSMNISSRGLASAARAYRNEK 116 (822)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHhhCccchhhHH-HHHHHHHHcCCcHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcC
Confidence 4444447788888888877542 33322333 55555556688888888777765211 11122 22444555
Q ss_pred hHHHHHHHHHHHhhccc
Q 002318 435 EQDALRTFLLRKLDNLA 451 (936)
Q Consensus 435 ~~~~L~~YL~~~l~~l~ 451 (936)
+.+.-...+..-+..-+
T Consensus 117 dyd~Aiely~kaL~~dP 133 (822)
T PRK14574 117 RWDQALALWQSSLKKDP 133 (822)
T ss_pred CHHHHHHHHHHHHhhCC
Confidence 55444444444444333
No 450
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=29.81 E-value=6.9e+02 Score=28.25 Aligned_cols=124 Identities=10% Similarity=0.116 Sum_probs=0.0
Q ss_pred CCEEEEEecCCeEEEEeC-CCCCceeeEcCCCCCCcc----ceeE---EEeCCCCCeEEEEeecCCCcc--------EEE
Q 002318 31 NDVIVLGTSKGWLIRHDF-GAGDSYDIDLSAGRPGEQ----SIHK---VFVDPGGSHCIATIVGSGGAE--------TFY 94 (936)
Q Consensus 31 ~n~l~l~~~~g~l~ridl-~~~~~~~~~l~~~~~~~~----~i~~---i~lDp~G~hlli~~~~~~~g~--------~~Y 94 (936)
+..+|+..+ |+|+.||+ ...-.....+.....+.. +.-. +-++|.|.+++|.+. .+. +..
T Consensus 206 g~~~~vs~e-G~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~lyV~~~---~~~~~thk~~~~~V 281 (352)
T TIGR02658 206 GRLVWPTYT-GKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHRARDRIYLLAD---QRAKWTHKTASRFL 281 (352)
T ss_pred CcEEEEecC-CeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcCCCCEEEEEec---CCccccccCCCCEE
Q ss_pred EecCCCCceeccCCC-CceEEEEEecCCCCCCCCcce-EEEEcC--CCcEEEEEEecCCcccceeeEEeeeCCCCCcee
Q 002318 95 THAKWSKPRVLSKLK-GLVVNAVAWNRQQITEASTKE-IILGTD--TGQLHEMAVDEKDKREKYIKLLFELNELPEAFM 169 (936)
Q Consensus 95 ~~~~~~k~k~L~klk-g~~I~sVaw~~~~~~~~st~~-iLiGt~--~G~i~e~~i~~~~~~~~~~k~v~~l~~~~~~I~ 169 (936)
.-......+.+.++. |..+.+|+++++. . .|..|+ .|.|.-+..... +-++.+..++..|.-+.
T Consensus 282 ~ViD~~t~kvi~~i~vG~~~~~iavS~Dg-------kp~lyvtn~~s~~VsViD~~t~----k~i~~i~~vg~~P~~~~ 349 (352)
T TIGR02658 282 FVVDAKTGKRLRKIELGHEIDSINVSQDA-------KPLLYALSTGDKTLYIFDAETG----KELSSVNQLGRGPQVIT 349 (352)
T ss_pred EEEECCCCeEEEEEeCCCceeeEEECCCC-------CeEEEEeCCCCCcEEEEECcCC----eEEeeeccCCCCCeEEe
No 451
>KOG4236 consensus Serine/threonine protein kinase PKC mu/PKD and related proteins [Signal transduction mechanisms]
Probab=29.55 E-value=17 Score=42.27 Aligned_cols=43 Identities=19% Similarity=0.450 Sum_probs=31.3
Q ss_pred cccccccchhhhhcccccccccccCCCCCCCCEEEEcCCChhHHHhHHHHHhhcCCc
Q 002318 833 DEDCGVCRRKILVAGRDYRMARGYASVGPMAPFYVFPCGHAFHAQCLIAHVTQCTNE 889 (936)
Q Consensus 833 ~~~C~~C~k~L~~~~~~~~~~~~~~~~~~~~~fvvFpCgH~fH~~CL~~~~~~~~~~ 889 (936)
-.-|..||.-|++.- | ..+-.+.||-.||++|.-+--.+..+.
T Consensus 156 PtFCD~CGEmL~GLv---r-----------QGlKC~gCglNyHKRCa~kipNNCsG~ 198 (888)
T KOG4236|consen 156 PTFCDFCGEMLFGLV---R-----------QGLKCEGCGLNYHKRCAFKIPNNCSGV 198 (888)
T ss_pred chHHHHHHHHHHHHH---H-----------ccccccCCCCcHhhhhhhcCCCCCCcc
Confidence 357999999999831 2 146678999999999997644444344
No 452
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=29.35 E-value=4e+02 Score=28.84 Aligned_cols=142 Identities=14% Similarity=0.145 Sum_probs=0.0
Q ss_pred hhhHHHHHHhcCChhhHHHHHHHHHHHHHhcCCHHHHHHHHHHhc-----------CCCChHHHHHHhcCcChHHHHHHH
Q 002318 374 MKEYAAALANCRDPLQRDQVYLVQAEAAFATKDFHRAASFYAKIN-----------YILSFEEITLKFISVSEQDALRTF 442 (936)
Q Consensus 374 ~~~f~~Al~~~~~~~~~~~I~~~~~~~L~~~g~y~~Aa~~y~~~~-----------~~~~~E~v~lkFl~~~~~~~L~~Y 442 (936)
..+|++|..+ ..+-|..+-..|+|.+|+..|.+.. -...+++.+.-+-+.+-..++..|
T Consensus 28 ~~~~e~Aa~~----------y~~Aa~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k~~~~~~Ai~~~ 97 (282)
T PF14938_consen 28 KPDYEEAADL----------YEKAANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYKKGDPDEAIECY 97 (282)
T ss_dssp CHHHHHHHHH----------HHHHHHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTHHHHHHHH
T ss_pred CCCHHHHHHH----------HHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhCHHHHHHHH
Q ss_pred HHHHhhcccCchhHHHHHHHHHHHHHHHHHHhhhhcccchhhccchHHHHHHHHHHHHHHhcccccCCHHHHHHHHHHcC
Q 002318 443 LLRKLDNLAKDDKCQITMISTWATELYLDKINRLLLEDDTALENRSSEYQSIMREFRAFLSDCKDVLDEATTMKLLESYG 522 (936)
Q Consensus 443 L~~~l~~l~~~~~~~~~lL~~Wl~ely~~~l~~~~~e~~~~~~~~~~~~~~~~~~l~~fl~~~~~~ld~~tv~~ll~~~g 522 (936)
-...--........+...+..=+.++|...+.+. .+...-+++=+.-+...=.....-+++..
T Consensus 98 ~~A~~~y~~~G~~~~aA~~~~~lA~~ye~~~~d~---------------e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~-- 160 (282)
T PF14938_consen 98 EKAIEIYREAGRFSQAAKCLKELAEIYEEQLGDY---------------EKAIEYYQKAAELYEQEGSPHSAAECLLK-- 160 (282)
T ss_dssp HHHHHHHHHCT-HHHHHHHHHHHHHHHCCTT--H---------------HHHHHHHHHHHHHHHHTT-HHHHHHHHHH--
T ss_pred HHHHHHHHhcCcHHHHHHHHHHHHHHHHHHcCCH---------------HHHHHHHHHHHHHHHHCCChhhHHHHHHH--
Q ss_pred ChhHHHHHHHhhhhHHHHHHHHHhcccHHHHHHHHhC
Q 002318 523 RVEELVFFASLKEQHEIVVHHYIQQGEAKKALQMLRK 559 (936)
Q Consensus 523 ~~e~~l~~a~~~~dy~~ll~~yi~~~~~~~AL~~L~~ 559 (936)
+..+++..++|++|++++.+
T Consensus 161 -----------------~A~l~~~l~~y~~A~~~~e~ 180 (282)
T PF14938_consen 161 -----------------AADLYARLGRYEEAIEIYEE 180 (282)
T ss_dssp -----------------HHHHHHHTT-HHHHHHHHHH
T ss_pred -----------------HHHHHHHhCCHHHHHHHHHH
No 453
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=29.17 E-value=3.6e+02 Score=29.51 Aligned_cols=155 Identities=11% Similarity=0.103 Sum_probs=89.3
Q ss_pred eeEEEEeCCEEEEEe--cCCeEEEEeCC----CCCceeeEcCCCCC----------CccceeEEEeCCCCCeEEEEeecC
Q 002318 24 ITCMSAGNDVIVLGT--SKGWLIRHDFG----AGDSYDIDLSAGRP----------GEQSIHKVFVDPGGSHCIATIVGS 87 (936)
Q Consensus 24 i~~l~v~~n~l~l~~--~~g~l~ridl~----~~~~~~~~l~~~~~----------~~~~i~~i~lDp~G~hlli~~~~~ 87 (936)
..|.+.+.+=+.+|| .+-.|-.+|.. .+.+.++.--.... -.+.|+.+-+.|+-..|+..++
T Consensus 115 cR~aafs~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHPre~ILiS~sr-- 192 (430)
T KOG0640|consen 115 CRAAAFSPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHPRETILISGSR-- 192 (430)
T ss_pred eeeeeeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecchhheEEeccC--
Confidence 455666666555555 44566666761 12222221110000 1257888888898876666666
Q ss_pred CCccEEEEecCCCCc----eeccCCCCceEEEEEecCCCCCCCCcceEEEEcCCCcEEEEEEecCCcccceeeEEeeeCC
Q 002318 88 GGAETFYTHAKWSKP----RVLSKLKGLVVNAVAWNRQQITEASTKEIILGTDTGQLHEMAVDEKDKREKYIKLLFELNE 163 (936)
Q Consensus 88 ~~g~~~Y~~~~~~k~----k~L~klkg~~I~sVaw~~~~~~~~st~~iLiGt~~G~i~e~~i~~~~~~~~~~k~v~~l~~ 163 (936)
++.+-....+.+.+ |.+.. -..|+|+.|.|. ..-+|+||..-.+-.+.++.- +.+-. ..|+
T Consensus 193 -D~tvKlFDfsK~saKrA~K~~qd--~~~vrsiSfHPs------GefllvgTdHp~~rlYdv~T~----Qcfvs--anPd 257 (430)
T KOG0640|consen 193 -DNTVKLFDFSKTSAKRAFKVFQD--TEPVRSISFHPS------GEFLLVGTDHPTLRLYDVNTY----QCFVS--ANPD 257 (430)
T ss_pred -CCeEEEEecccHHHHHHHHHhhc--cceeeeEeecCC------CceEEEecCCCceeEEeccce----eEeee--cCcc
Confidence 67665555544322 33432 368999999942 225677888876666666542 10000 1132
Q ss_pred C--CCceeeEEEEeeccCCCceEEEEEECCCeEEEEecC
Q 002318 164 L--PEAFMGLQMETASLSNGTRYYVMAVTPTRLYSFTGF 200 (936)
Q Consensus 164 ~--~~~I~gi~~~~~~~~~~~~~~i~ast~~rly~f~~~ 200 (936)
. .+.|+.+.+. ...+..+-+|-...+--|+|.
T Consensus 258 ~qht~ai~~V~Ys-----~t~~lYvTaSkDG~IklwDGV 291 (430)
T KOG0640|consen 258 DQHTGAITQVRYS-----STGSLYVTASKDGAIKLWDGV 291 (430)
T ss_pred cccccceeEEEec-----CCccEEEEeccCCcEEeeccc
Confidence 1 2568888886 334678888878888889885
No 454
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=29.15 E-value=3.6e+02 Score=29.79 Aligned_cols=96 Identities=15% Similarity=0.188 Sum_probs=60.5
Q ss_pred cceeEEEeCCCCCeEEEEeecCCCccEE-EEe--cC-CCCceeccCCCCceEEEEEecCCCCCCCCcceEEEEcCCCcEE
Q 002318 66 QSIHKVFVDPGGSHCIATIVGSGGAETF-YTH--AK-WSKPRVLSKLKGLVVNAVAWNRQQITEASTKEIILGTDTGQLH 141 (936)
Q Consensus 66 ~~i~~i~lDp~G~hlli~~~~~~~g~~~-Y~~--~~-~~k~k~L~klkg~~I~sVaw~~~~~~~~st~~iLiGt~~G~i~ 141 (936)
++|+..--.+.+..+.+|.+ +.++. |-- .+ +.+.+.|++ .+..|+.|.|++ . +.+|+-+..+-.-|
T Consensus 11 ~pitchAwn~drt~iAv~~~---~~evhiy~~~~~~~w~~~htls~-Hd~~vtgvdWap-~-----snrIvtcs~drnay 80 (361)
T KOG1523|consen 11 EPITCHAWNSDRTQIAVSPN---NHEVHIYSMLGADLWEPAHTLSE-HDKIVTGVDWAP-K-----SNRIVTCSHDRNAY 80 (361)
T ss_pred CceeeeeecCCCceEEeccC---CceEEEEEecCCCCceeceehhh-hCcceeEEeecC-C-----CCceeEccCCCCcc
Confidence 56777777788888888888 66664 322 23 456677765 678999999993 2 33788887664344
Q ss_pred EEEEecCCcccceeeEEeeeCCCCCceeeEEEEe
Q 002318 142 EMAVDEKDKREKYIKLLFELNELPEAFMGLQMET 175 (936)
Q Consensus 142 e~~i~~~~~~~~~~k~v~~l~~~~~~I~gi~~~~ 175 (936)
--.... +..+|....|-......++|.|..
T Consensus 81 Vw~~~~----~~~WkptlvLlRiNrAAt~V~WsP 110 (361)
T KOG1523|consen 81 VWTQPS----GGTWKPTLVLLRINRAATCVKWSP 110 (361)
T ss_pred ccccCC----CCeeccceeEEEeccceeeEeecC
Confidence 443311 223554433322225689999984
No 455
>PRK01029 tolB translocation protein TolB; Provisional
Probab=29.12 E-value=8.2e+02 Score=28.35 Aligned_cols=114 Identities=11% Similarity=0.049 Sum_probs=63.3
Q ss_pred eEEEEeCC--EEEEEe-cCC--eEEEEeCCCCCceeeEcCCCCCCccceeEEEeCCCCCeEEEEeecCCCccEEEEecCC
Q 002318 25 TCMSAGND--VIVLGT-SKG--WLIRHDFGAGDSYDIDLSAGRPGEQSIHKVFVDPGGSHCIATIVGSGGAETFYTHAKW 99 (936)
Q Consensus 25 ~~l~v~~n--~l~l~~-~~g--~l~ridl~~~~~~~~~l~~~~~~~~~i~~i~lDp~G~hlli~~~~~~~g~~~Y~~~~~ 99 (936)
++.+.+.+ .|++.. .+| .|+++++.+.......+... ...+...-..|.|.+++.++...+....+-++...
T Consensus 284 ~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~~~~~lt~~---~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~ 360 (428)
T PRK01029 284 GNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQSPRLLTKK---YRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLAT 360 (428)
T ss_pred CCeEECCCCCEEEEEECCCCCceEEEEECcccccceEEeccC---CCCccceeECCCCCEEEEEEcCCCCcEEEEEECCC
Confidence 45555544 555544 344 58888873221111112111 12344556789999998887632233455566666
Q ss_pred CCceeccCCCCceEEEEEecCCCCCCCCcceEEEEcC---CCcEEEEEEecC
Q 002318 100 SKPRVLSKLKGLVVNAVAWNRQQITEASTKEIILGTD---TGQLHEMAVDEK 148 (936)
Q Consensus 100 ~k~k~L~klkg~~I~sVaw~~~~~~~~st~~iLiGt~---~G~i~e~~i~~~ 148 (936)
.+.+.|..- ...+.+.+|.++ .+.|+..+. .+.||...++.+
T Consensus 361 g~~~~Lt~~-~~~~~~p~wSpD------G~~L~f~~~~~g~~~L~~vdl~~g 405 (428)
T PRK01029 361 GRDYQLTTS-PENKESPSWAID------SLHLVYSAGNSNESELYLISLITK 405 (428)
T ss_pred CCeEEccCC-CCCccceEECCC------CCEEEEEECCCCCceEEEEECCCC
Confidence 677788753 346788999843 224554332 255777666543
No 456
>PF13540 RCC1_2: Regulator of chromosome condensation (RCC1) repeat; PDB: 3QI0_D 1JTD_B 3QHY_B.
Probab=28.95 E-value=1.5e+02 Score=20.19 Aligned_cols=25 Identities=16% Similarity=0.029 Sum_probs=20.7
Q ss_pred eeEEEEeCCEEEEEecCCeEEEEeC
Q 002318 24 ITCMSAGNDVIVLGTSKGWLIRHDF 48 (936)
Q Consensus 24 i~~l~v~~n~l~l~~~~g~l~ridl 48 (936)
|+++++..+..+..+.+|.|+-+-.
T Consensus 1 V~~ia~G~~ht~al~~~g~v~~wG~ 25 (30)
T PF13540_consen 1 VVQIACGGYHTCALTSDGEVYCWGD 25 (30)
T ss_dssp EEEEEEESSEEEEEE-TTEEEEEE-
T ss_pred CEEEEecCCEEEEEEcCCCEEEEcC
Confidence 6789999999999999999998743
No 457
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=28.74 E-value=85 Score=38.17 Aligned_cols=72 Identities=28% Similarity=0.298 Sum_probs=47.1
Q ss_pred hHHHHHHHHHhhCCCCCCCCcccCChHHHHHHHHhcCcceeeehhhhccccHHHHHHHHHh--cCHHHHHHHhhccCCC
Q 002318 649 DSALLRFLQCKFGKGRENGPEFFYDPKYALRLCLKEKRMRACVHIYGMMSMHEEAVALALQ--VDPELAMAEADKVEDD 725 (936)
Q Consensus 649 ~~~Ll~fL~~~~~~~~~~~~~~~yd~~~aLrlc~~~~~~~~~v~L~~~~g~~~eAl~l~l~--~di~lA~~~a~~~~~d 725 (936)
..++.+||.+...... . ..=-+.-|..+..++.+..+.++.+ .-|..++||+++++ +|+.+|+.+|.-.++|
T Consensus 435 ~~k~~~Fl~ndF~~~r-w---r~AAlKNAyaLlsk~Ry~~AAaFFL-Lag~l~dAv~V~~~~l~D~qLAi~i~Rl~e~d 508 (631)
T PF12234_consen 435 QQKMAKFLSNDFTEPR-W---RTAALKNAYALLSKHRYEYAAAFFL-LAGSLKDAVNVCLRQLNDPQLAIAIARLYEGD 508 (631)
T ss_pred cHHHHHHHhhcCCChH-H---HHHHHHhHHHHHhcccHHHHHHHHH-hcccHHHHHHHHHHHccChhHHHHHHHHHcCC
Confidence 5789999976411000 0 0011344666777777665555433 45789999999999 8999999999554433
No 458
>smart00249 PHD PHD zinc finger. The plant homeodomain (PHD) finger is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in epigenetics and chromatin-mediated transcriptional regulation. The PHD finger binds two zinc ions using the so-called 'cross-brace' motif and is thus structurally related to the KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=28.47 E-value=5.6e+02 Score=31.07 Aligned_cols=139 Identities=16% Similarity=0.144 Sum_probs=70.7
Q ss_pred HHhcccHHHHHHHHhCC----CCchhhHHhhHHHHHhHChHHHHHHHHcc-CCCCCCcchhHhhhcCC-CCCCCCChHHH
Q 002318 544 YIQQGEAKKALQMLRKP----AVPIDLQYKFAPDLIMLDAYETVESWMTT-NNLNPRKLIPAMMRYSS-EPHAKNETHEV 617 (936)
Q Consensus 544 yi~~~~~~~AL~~L~~~----~d~~~li~k~~~~Ll~~~p~~ti~ll~~~-~~ld~~~li~~L~~~~~-~~~~~~~~~~~ 617 (936)
++....|++|.+..++- ++....+|-.+.+-+...--+.-++..+. -.++|...+- +-+-. -.+.....+.+
T Consensus 465 ~~~~ee~d~a~~~fr~Al~~~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~nsvi--~~~~g~~~~~~k~~d~A 542 (638)
T KOG1126|consen 465 SIATEEFDKAMKSFRKALGVDPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPSNSVI--LCHIGRIQHQLKRKDKA 542 (638)
T ss_pred hhhhHHHHhHHHHHHhhhcCCchhhHHHHhhhhheeccchhhHHHHHHHhhhcCCccchhH--HhhhhHHHHHhhhhhHH
Confidence 34455667776666542 22245666666666655444555555443 3777776431 11100 00001134568
Q ss_pred HHHHHHHHhhcCCCC-HhHHHHHHHHhhcCCChH--HHHHHHHHhhCCCCCCCCcccCChHHHHHHHHhcCcceeeehhh
Q 002318 618 IKYLEFCVHRLHNED-PGVHNLLLSLYAKQEDDS--ALLRFLQCKFGKGRENGPEFFYDPKYALRLCLKEKRMRACVHIY 694 (936)
Q Consensus 618 ~~YLe~li~~~~~~~-~~~hn~ll~Ly~~~~~~~--~Ll~fL~~~~~~~~~~~~~~~yd~~~aLrlc~~~~~~~~~v~L~ 694 (936)
+.+++.-+.-++... ..+|.-.+ |++-....+ ..+++|+.. -++.+.... ....+|
T Consensus 543 L~~~~~A~~ld~kn~l~~~~~~~i-l~~~~~~~eal~~LEeLk~~-------------vP~es~v~~-------llgki~ 601 (638)
T KOG1126|consen 543 LQLYEKAIHLDPKNPLCKYHRASI-LFSLGRYVEALQELEELKEL-------------VPQESSVFA-------LLGKIY 601 (638)
T ss_pred HHHHHHHHhcCCCCchhHHHHHHH-HHhhcchHHHHHHHHHHHHh-------------CcchHHHHH-------HHHHHH
Confidence 888887765544332 34444433 555543222 345666654 122222221 134567
Q ss_pred hccccHHHHHH
Q 002318 695 GMMSMHEEAVA 705 (936)
Q Consensus 695 ~~~g~~~eAl~ 705 (936)
.+||+++.|+.
T Consensus 602 k~~~~~~~Al~ 612 (638)
T KOG1126|consen 602 KRLGNTDLALL 612 (638)
T ss_pred HHHccchHHHH
Confidence 88999988875
No 460
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=28.28 E-value=75 Score=30.69 Aligned_cols=49 Identities=12% Similarity=0.094 Sum_probs=38.7
Q ss_pred HHHchhhHHHHHHhcCChh----hHHHHHHHHHHHHHhcCCHHHHHHHHHHhc
Q 002318 370 VYLDMKEYAAALANCRDPL----QRDQVYLVQAEAAFATKDFHRAASFYAKIN 418 (936)
Q Consensus 370 ~ll~~~~f~~Al~~~~~~~----~~~~I~~~~~~~L~~~g~y~~Aa~~y~~~~ 418 (936)
++...|+|++|+...+... .-...+...|.-++..|++++|...|.+..
T Consensus 67 ~~~~~g~~~~A~~~y~~Al~l~p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al 119 (144)
T PRK15359 67 TWMMLKEYTTAINFYGHALMLDASHPEPVYQTGVCLKMMGEPGLAREAFQTAI 119 (144)
T ss_pred HHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3677899999999865321 234677788889999999999999998875
No 461
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=28.05 E-value=1.9e+02 Score=29.72 Aligned_cols=90 Identities=13% Similarity=0.180 Sum_probs=54.3
Q ss_pred hhhHHH----HHHchhhHHHHHHhcCCh----hhHHHHHHHHHHHH-HhcCC--HHHHHHHHHHhcCC-----CChHHHH
Q 002318 364 GRDMWK----VYLDMKEYAAALANCRDP----LQRDQVYLVQAEAA-FATKD--FHRAASFYAKINYI-----LSFEEIT 427 (936)
Q Consensus 364 ~~~~W~----~ll~~~~f~~Al~~~~~~----~~~~~I~~~~~~~L-~~~g~--y~~Aa~~y~~~~~~-----~~~E~v~ 427 (936)
+...|. +|+..|+|++|+...+.. ..-..+...+|.-| +..|+ +++|.+.+.+.... ..+-...
T Consensus 72 ~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA 151 (198)
T PRK10370 72 NSEQWALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTALMLLA 151 (198)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHHH
Confidence 344564 467889999999886532 23457778888865 67777 58999998887511 1122222
Q ss_pred HHhcCcChHHHHHHHHHHHhhcccCc
Q 002318 428 LKFISVSEQDALRTFLLRKLDNLAKD 453 (936)
Q Consensus 428 lkFl~~~~~~~L~~YL~~~l~~l~~~ 453 (936)
.-+.+.++.+.=..+..+-++..+.+
T Consensus 152 ~~~~~~g~~~~Ai~~~~~aL~l~~~~ 177 (198)
T PRK10370 152 SDAFMQADYAQAIELWQKVLDLNSPR 177 (198)
T ss_pred HHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence 23334555555555555555544443
No 462
>PF07282 OrfB_Zn_ribbon: Putative transposase DNA-binding domain; InterPro: IPR010095 This entry represents a region of a sequence similarity between a family of putative transposases of Thermoanaerobacter tengcongensis, smaller related proteins from Bacillus anthracis, putative transposes described by IPR001959 from INTERPRO, and other proteins. More information about these proteins can be found at Protein of the Month: Transposase [].
Probab=27.98 E-value=62 Score=26.85 Aligned_cols=36 Identities=22% Similarity=0.373 Sum_probs=24.3
Q ss_pred cccccccchhhhhcccccccccccCCCCCCCCEEEEcCCChhHHHhHHH
Q 002318 833 DEDCGVCRRKILVAGRDYRMARGYASVGPMAPFYVFPCGHAFHAQCLIA 881 (936)
Q Consensus 833 ~~~C~~C~k~L~~~~~~~~~~~~~~~~~~~~~fvvFpCgH~fH~~CL~~ 881 (936)
++.|+.||...... ...+ .|.-..||+.+|.|-...
T Consensus 28 Sq~C~~CG~~~~~~-~~~r------------~~~C~~Cg~~~~rD~naA 63 (69)
T PF07282_consen 28 SQTCPRCGHRNKKR-RSGR------------VFTCPNCGFEMDRDVNAA 63 (69)
T ss_pred ccCccCcccccccc-cccc------------eEEcCCCCCEECcHHHHH
Confidence 57899999887661 1012 455555999999886543
No 463
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=27.82 E-value=3.1e+02 Score=30.98 Aligned_cols=79 Identities=15% Similarity=0.103 Sum_probs=54.5
Q ss_pred CCEEEEEecCCeEEEEeC--CCCCceeeEcCCCCCCccceeEEEeCCCCCeEEEEeecCCCccEEEEecCCCCceeccC-
Q 002318 31 NDVIVLGTSKGWLIRHDF--GAGDSYDIDLSAGRPGEQSIHKVFVDPGGSHCIATIVGSGGAETFYTHAKWSKPRVLSK- 107 (936)
Q Consensus 31 ~n~l~l~~~~g~l~ridl--~~~~~~~~~l~~~~~~~~~i~~i~lDp~G~hlli~~~~~~~g~~~Y~~~~~~k~k~L~k- 107 (936)
++.++-+|..+.|-.+|. +.-.|..|++. ...|..+-++|.|+.+++... .|+..-+..+.. +.+.-
T Consensus 216 ~~~fat~T~~hqvR~YDt~~qRRPV~~fd~~-----E~~is~~~l~p~gn~Iy~gn~---~g~l~~FD~r~~--kl~g~~ 285 (412)
T KOG3881|consen 216 NYKFATITRYHQVRLYDTRHQRRPVAQFDFL-----ENPISSTGLTPSGNFIYTGNT---KGQLAKFDLRGG--KLLGCG 285 (412)
T ss_pred CceEEEEecceeEEEecCcccCcceeEeccc-----cCcceeeeecCCCcEEEEecc---cchhheecccCc--eeeccc
Confidence 567888999999999999 44446677765 568999999999988777665 566655444332 22222
Q ss_pred CCCc--eEEEEEec
Q 002318 108 LKGL--VVNAVAWN 119 (936)
Q Consensus 108 lkg~--~I~sVaw~ 119 (936)
++|+ .|++|--.
T Consensus 286 ~kg~tGsirsih~h 299 (412)
T KOG3881|consen 286 LKGITGSIRSIHCH 299 (412)
T ss_pred cCCccCCcceEEEc
Confidence 3442 67777766
No 464
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=27.72 E-value=6.7e+02 Score=25.61 Aligned_cols=37 Identities=19% Similarity=0.208 Sum_probs=30.3
Q ss_pred eeEEEEeCCEEEEEecCCeEEEEeC-CCCCceeeEcCC
Q 002318 24 ITCMSAGNDVIVLGTSKGWLIRHDF-GAGDSYDIDLSA 60 (936)
Q Consensus 24 i~~l~v~~n~l~l~~~~g~l~ridl-~~~~~~~~~l~~ 60 (936)
....++.++.++++..+|.|+.+|+ .+..+-+.+++.
T Consensus 115 ~~~~~~~~~~~~~~~~~g~l~~~d~~tG~~~w~~~~~~ 152 (238)
T PF13360_consen 115 SSSPAVDGDRLYVGTSSGKLVALDPKTGKLLWKYPVGE 152 (238)
T ss_dssp -SEEEEETTEEEEEETCSEEEEEETTTTEEEEEEESST
T ss_pred ccCceEecCEEEEEeccCcEEEEecCCCcEEEEeecCC
Confidence 3567778999999999999999999 777777777754
No 465
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=27.66 E-value=86 Score=29.25 Aligned_cols=49 Identities=18% Similarity=0.107 Sum_probs=37.7
Q ss_pred HHHchhhHHHHHHhcCC----hhhHHHHHHHHHHHHHhcCCHHHHHHHHHHhc
Q 002318 370 VYLDMKEYAAALANCRD----PLQRDQVYLVQAEAAFATKDFHRAASFYAKIN 418 (936)
Q Consensus 370 ~ll~~~~f~~Al~~~~~----~~~~~~I~~~~~~~L~~~g~y~~Aa~~y~~~~ 418 (936)
.++..|+|++|..+.+. ...-.......|.-+...|++++|...|.+..
T Consensus 60 ~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 112 (135)
T TIGR02552 60 CCQMLKEYEEAIDAYALAAALDPDDPRPYFHAAECLLALGEPESALKALDLAI 112 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 46678999999987542 12234667778899999999999999987765
No 466
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=27.58 E-value=2.8e+02 Score=32.04 Aligned_cols=112 Identities=16% Similarity=0.097 Sum_probs=0.0
Q ss_pred CCCceeEEEEe--CCEEEEEecCCeEEEEeCCCCCceeeEcCCCCCCccceeEEEeCCCCCeEEEEeecCCCccEEEEec
Q 002318 20 GRGVITCMSAG--NDVIVLGTSKGWLIRHDFGAGDSYDIDLSAGRPGEQSIHKVFVDPGGSHCIATIVGSGGAETFYTHA 97 (936)
Q Consensus 20 ~~~~i~~l~v~--~n~l~l~~~~g~l~ridl~~~~~~~~~l~~~~~~~~~i~~i~lDp~G~hlli~~~~~~~g~~~Y~~~ 97 (936)
.+|+|-++-.+ |+++++--....|--++..|++..-+....-..+...|.+.|--.+-+-.+|++. |--+|-..
T Consensus 65 d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l~~~~~ck~k~~~IlGF~W~~s~e~A~i~~~----G~e~y~v~ 140 (657)
T KOG2377|consen 65 DKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQLEYTQECKTKNANILGFCWTSSTEIAFITDQ----GIEFYQVL 140 (657)
T ss_pred CCCceeEEEeccCcceEEEEecCceEEEEecCCCchhhHHHHHhccCcceeEEEEEecCeeEEEEecC----CeEEEEEc
Q ss_pred CCCCceeccCCCCceEEEEEecCCCCCCCCcceEEEEcC-CCcEE
Q 002318 98 KWSKPRVLSKLKGLVVNAVAWNRQQITEASTKEIILGTD-TGQLH 141 (936)
Q Consensus 98 ~~~k~k~L~klkg~~I~sVaw~~~~~~~~st~~iLiGt~-~G~i~ 141 (936)
...+--.+-|-+...|.=.+|.+ .|.-+|+.|. .|..+
T Consensus 141 pekrslRlVks~~~nvnWy~yc~------et~v~LL~t~~~~n~l 179 (657)
T KOG2377|consen 141 PEKRSLRLVKSHNLNVNWYMYCP------ETAVILLSTTVLENVL 179 (657)
T ss_pred hhhhhhhhhhhcccCccEEEEcc------ccceEeeecccccccc
No 467
>PRK01029 tolB translocation protein TolB; Provisional
Probab=27.55 E-value=3.2e+02 Score=31.79 Aligned_cols=91 Identities=15% Similarity=0.171 Sum_probs=54.7
Q ss_pred eeEEEEeC--CEEEEEe-cC--CeEEEEeCCCCCceeeEcCCCCCCccceeEEEeCCCCCeEEEEeecCCCccEEEEecC
Q 002318 24 ITCMSAGN--DVIVLGT-SK--GWLIRHDFGAGDSYDIDLSAGRPGEQSIHKVFVDPGGSHCIATIVGSGGAETFYTHAK 98 (936)
Q Consensus 24 i~~l~v~~--n~l~l~~-~~--g~l~ridl~~~~~~~~~l~~~~~~~~~i~~i~lDp~G~hlli~~~~~~~g~~~Y~~~~ 98 (936)
+.+.+.+. +.|++.. .+ ..|+++|+...+... +... ...+......|.|.+++..+...+.+..|.++..
T Consensus 329 ~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~~~--Lt~~---~~~~~~p~wSpDG~~L~f~~~~~g~~~L~~vdl~ 403 (428)
T PRK01029 329 SSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGRDYQ--LTTS---PENKESPSWAIDSLHLVYSAGNSNESELYLISLI 403 (428)
T ss_pred ccceeECCCCCEEEEEEcCCCCcEEEEEECCCCCeEE--ccCC---CCCccceEECCCCCEEEEEECCCCCceEEEEECC
Confidence 34455543 4554443 33 368888983333332 2211 1234556678999998887663334567777877
Q ss_pred CCCceeccCCCCceEEEEEecC
Q 002318 99 WSKPRVLSKLKGLVVNAVAWNR 120 (936)
Q Consensus 99 ~~k~k~L~klkg~~I~sVaw~~ 120 (936)
..+.+.|.+-.| .+...+|.+
T Consensus 404 ~g~~~~Lt~~~g-~~~~p~Ws~ 424 (428)
T PRK01029 404 TKKTRKIVIGSG-EKRFPSWGA 424 (428)
T ss_pred CCCEEEeecCCC-cccCceecC
Confidence 777777875433 578899984
No 468
>COG5219 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=27.45 E-value=33 Score=42.38 Aligned_cols=49 Identities=20% Similarity=0.497 Sum_probs=32.0
Q ss_pred eecccccccccchhhhhcccccccccccCCCCCCCCEEEEcCCChhHHHhHHHHHhhcCCc
Q 002318 829 VIDRDEDCGVCRRKILVAGRDYRMARGYASVGPMAPFYVFPCGHAFHAQCLIAHVTQCTNE 889 (936)
Q Consensus 829 ~i~~~~~C~~C~k~L~~~~~~~~~~~~~~~~~~~~~fvvFpCgH~fH~~CL~~~~~~~~~~ 889 (936)
..+.-+.|++|---|...+ | +-++. -.=-|.|-||..||-+....+.++
T Consensus 1465 ~fsG~eECaICYsvL~~vd---r---~lPsk------rC~TCknKFH~~CLyKWf~Ss~~s 1513 (1525)
T COG5219 1465 KFSGHEECAICYSVLDMVD---R---SLPSK------RCATCKNKFHTRCLYKWFASSARS 1513 (1525)
T ss_pred hcCCcchhhHHHHHHHHHh---c---cCCcc------ccchhhhhhhHHHHHHHHHhcCCC
Confidence 3456678999998887432 2 01100 011499999999999988766543
No 469
>PRK04043 tolB translocation protein TolB; Provisional
Probab=27.00 E-value=6.1e+02 Score=29.37 Aligned_cols=113 Identities=14% Similarity=0.154 Sum_probs=64.4
Q ss_pred eeEEEEeC--C-EEEEE-ec--CCeEEEEeCCCCCceeeEcCCCCCCccceeEEEeCCCCCeEEEEeecCCCccEEEEec
Q 002318 24 ITCMSAGN--D-VIVLG-TS--KGWLIRHDFGAGDSYDIDLSAGRPGEQSIHKVFVDPGGSHCIATIVGSGGAETFYTHA 97 (936)
Q Consensus 24 i~~l~v~~--n-~l~l~-~~--~g~l~ridl~~~~~~~~~l~~~~~~~~~i~~i~lDp~G~hlli~~~~~~~g~~~Y~~~ 97 (936)
+..-+.++ + .+++. .. +..|+++|+...+...+--. .+.....-..|.|.++++.....++++.|.++.
T Consensus 190 ~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~~-----~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~dl 264 (419)
T PRK04043 190 NIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIASS-----QGMLVVSDVSKDGSKLLLTMAPKGQPDIYLYDT 264 (419)
T ss_pred eEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEecC-----CCcEEeeEECCCCCEEEEEEccCCCcEEEEEEC
Confidence 34455554 3 34443 33 35699999933333333211 122222335899999988876445667777777
Q ss_pred CCCCceeccCCCCceEEEEEecCCCCCCCCcceEEEEcCC-C--cEEEEEEecC
Q 002318 98 KWSKPRVLSKLKGLVVNAVAWNRQQITEASTKEIILGTDT-G--QLHEMAVDEK 148 (936)
Q Consensus 98 ~~~k~k~L~klkg~~I~sVaw~~~~~~~~st~~iLiGt~~-G--~i~e~~i~~~ 148 (936)
...+.++|+...+.. .+-.|.++ .+.|+..+++ | .||...++.+
T Consensus 265 ~~g~~~~LT~~~~~d-~~p~~SPD------G~~I~F~Sdr~g~~~Iy~~dl~~g 311 (419)
T PRK04043 265 NTKTLTQITNYPGID-VNGNFVED------DKRIVFVSDRLGYPNIFMKKLNSG 311 (419)
T ss_pred CCCcEEEcccCCCcc-CccEECCC------CCEEEEEECCCCCceEEEEECCCC
Confidence 677778888765533 34578843 2356665543 2 5777776543
No 470
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=26.98 E-value=6.2e+02 Score=28.84 Aligned_cols=50 Identities=16% Similarity=0.274 Sum_probs=34.8
Q ss_pred HHHHchhhHHHHHHhcCC----hhhHHHHHHHHHHHHHhcCCHHHHHHHHHHhc
Q 002318 369 KVYLDMKEYAAALANCRD----PLQRDQVYLVQAEAAFATKDFHRAASFYAKIN 418 (936)
Q Consensus 369 ~~ll~~~~f~~Al~~~~~----~~~~~~I~~~~~~~L~~~g~y~~Aa~~y~~~~ 418 (936)
++++.+|+|+.|..-... ...-..|.+...+.++..|+|.+.-.+..+..
T Consensus 161 rlll~~~d~~aA~~~v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ 214 (400)
T COG3071 161 RLLLNRRDYPAARENVDQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPKLR 214 (400)
T ss_pred HHHHhCCCchhHHHHHHHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 457888888888765431 22345777788888888888888877766653
No 471
>KOG2005 consensus 26S proteasome regulatory complex, subunit RPN1/PSMD2 [Posttranslational modification, protein turnover, chaperones]
Probab=26.81 E-value=3.2e+02 Score=33.20 Aligned_cols=124 Identities=18% Similarity=0.164 Sum_probs=72.9
Q ss_pred hhhHHhhHHHHHhHChH-HHHHHHHccCCCCCCcchhHhhhcCCCCCCCCChHHHHHHHHHHHhhcCC-CCHhHHHHHHH
Q 002318 564 IDLQYKFAPDLIMLDAY-ETVESWMTTNNLNPRKLIPAMMRYSSEPHAKNETHEVIKYLEFCVHRLHN-EDPGVHNLLLS 641 (936)
Q Consensus 564 ~~li~k~~~~Ll~~~p~-~ti~ll~~~~~ld~~~li~~L~~~~~~~~~~~~~~~~~~YLe~li~~~~~-~~~~~hn~ll~ 641 (936)
.++..+-.+-.|.|+.+ +++++|++.+.+| .+++..... .-.....||..|..-.+. .+..+-.+.+.
T Consensus 178 ~~l~~~iV~f~mkHNAE~eAiDlL~Eve~id--~l~~~Vd~~--------n~~RvclYl~sc~~~lP~Pdd~~ll~~a~~ 247 (878)
T KOG2005|consen 178 LDLVQEIVPFHMKHNAEFEAIDLLMEVEGID--LLLDYVDEH--------NYQRVCLYLTSCVPLLPGPDDVALLRTALK 247 (878)
T ss_pred HHHHHHHHHHHHhccchhHHHHHHHHhhhHh--HHHHHhhhh--------hHHHHHHHHHHHhhcCCCchhhHHHHHHHH
Confidence 35556666777777665 7899998755443 233322211 123467799999876543 44568888888
Q ss_pred HhhcCCChHHHHHHHHHhhCCCCCCCCcccCChHHHHHHH---HhcCcceeeehhhhccccH-----HHHHHHHHh
Q 002318 642 LYAKQEDDSALLRFLQCKFGKGRENGPEFFYDPKYALRLC---LKEKRMRACVHIYGMMSMH-----EEAVALALQ 709 (936)
Q Consensus 642 Ly~~~~~~~~Ll~fL~~~~~~~~~~~~~~~yd~~~aLrlc---~~~~~~~~~v~L~~~~g~~-----~eAl~l~l~ 709 (936)
+|.++++-.+-+...-.- -|.+.+-++| .+.-...-+.|+++|.|.+ .+++.-++.
T Consensus 248 IYlKf~~~~~al~~ai~l------------~~~~~v~~vf~s~~D~~~kKQ~~ymLaR~~i~~e~~~~e~l~di~s 311 (878)
T KOG2005|consen 248 IYLKFNEYPRALVGAIRL------------DDMKEVKEVFTSCTDPLLKKQMAYMLARHGIYFELSEDEELQDILS 311 (878)
T ss_pred HHHHHHHhHHHHHHHHhc------------CcHHHHHHHHHhccCHHHHHHHHHHHHhcCCceecCcCHHHHHHHc
Confidence 999876322222211111 1344444444 3334556677888887766 356777776
No 472
>COG2888 Predicted Zn-ribbon RNA-binding protein with a function in translation [Translation, ribosomal structure and biogenesis]
Probab=26.78 E-value=30 Score=27.87 Aligned_cols=31 Identities=29% Similarity=0.575 Sum_probs=20.8
Q ss_pred cccccccchhhhhcccccccccccCCCCCCCCEEEEc---CCChhHHHhH
Q 002318 833 DEDCGVCRRKILVAGRDYRMARGYASVGPMAPFYVFP---CGHAFHAQCL 879 (936)
Q Consensus 833 ~~~C~~C~k~L~~~~~~~~~~~~~~~~~~~~~fvvFp---CgH~fH~~CL 879 (936)
-..|..||..|-. + ...++|+ ||-.--.+|-
T Consensus 9 ~~~CtSCg~~i~p-----~-----------e~~v~F~CPnCGe~~I~Rc~ 42 (61)
T COG2888 9 PPVCTSCGREIAP-----G-----------ETAVKFPCPNCGEVEIYRCA 42 (61)
T ss_pred CceeccCCCEecc-----C-----------CceeEeeCCCCCceeeehhh
Confidence 3589999999944 2 1788997 5655444444
No 473
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=26.76 E-value=8.9e+02 Score=26.67 Aligned_cols=105 Identities=14% Similarity=0.061 Sum_probs=63.8
Q ss_pred eCCEEEEEecCCeEEEEeC-CCCCceeeEcCCCCCCccceeEEEeCCC-CCeEEEEeecCCCccEEEEecCCCCceeccC
Q 002318 30 GNDVIVLGTSKGWLIRHDF-GAGDSYDIDLSAGRPGEQSIHKVFVDPG-GSHCIATIVGSGGAETFYTHAKWSKPRVLSK 107 (936)
Q Consensus 30 ~~n~l~l~~~~g~l~ridl-~~~~~~~~~l~~~~~~~~~i~~i~lDp~-G~hlli~~~~~~~g~~~Y~~~~~~k~k~L~k 107 (936)
.++-+.-+.++|+|-.|+. ..+-+..+..+ +.+.+|+.+.+-|. -.|++||-. +..+|..+-+-.-+|..+.
T Consensus 359 dG~~iisaSsDgtvkvW~~KtteC~~Tfk~~---~~d~~vnsv~~~PKnpeh~iVCNr---sntv~imn~qGQvVrsfsS 432 (508)
T KOG0275|consen 359 DGHHIISASSDGTVKVWHGKTTECLSTFKPL---GTDYPVNSVILLPKNPEHFIVCNR---SNTVYIMNMQGQVVRSFSS 432 (508)
T ss_pred CCCeEEEecCCccEEEecCcchhhhhhccCC---CCcccceeEEEcCCCCceEEEEcC---CCeEEEEeccceEEeeecc
Confidence 3456667788899999999 65656666544 24678999999876 679999987 5666555544333333321
Q ss_pred ---CCCceEEEEEecCCCCCCCCcceE-EEEcCCCcEEEEEEecC
Q 002318 108 ---LKGLVVNAVAWNRQQITEASTKEI-ILGTDTGQLHEMAVDEK 148 (936)
Q Consensus 108 ---lkg~~I~sVaw~~~~~~~~st~~i-LiGt~~G~i~e~~i~~~ 148 (936)
-.|-.|. .+..+ .|+. -+-..+|.+|-.....+
T Consensus 433 GkREgGdFi~-~~lSp-------kGewiYcigED~vlYCF~~~sG 469 (508)
T KOG0275|consen 433 GKREGGDFIN-AILSP-------KGEWIYCIGEDGVLYCFSVLSG 469 (508)
T ss_pred CCccCCceEE-EEecC-------CCcEEEEEccCcEEEEEEeecC
Confidence 1233333 33441 1233 33466777776666544
No 474
>KOG1814 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=26.61 E-value=47 Score=37.39 Aligned_cols=33 Identities=30% Similarity=0.700 Sum_probs=0.0
Q ss_pred ccccchhhhhcccccccccccCCCCCCCCEEEEcCCChhHHHhHHHHHh
Q 002318 836 CGVCRRKILVAGRDYRMARGYASVGPMAPFYVFPCGHAFHAQCLIAHVT 884 (936)
Q Consensus 836 C~~C~k~L~~~~~~~~~~~~~~~~~~~~~fvvFpCgH~fH~~CL~~~~~ 884 (936)
|.+|-..-.+ . .-|+.-||+|.|-+.|+.++..
T Consensus 187 C~ICf~e~~G-----~-----------~c~~~lpC~Hv~Ck~C~kdY~~ 219 (445)
T KOG1814|consen 187 CCICFEEQMG-----Q-----------HCFKFLPCSHVFCKSCLKDYFT 219 (445)
T ss_pred ceeeehhhcC-----c-----------ceeeecccchHHHHHHHHHHHH
No 475
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=26.07 E-value=1.1e+02 Score=30.20 Aligned_cols=48 Identities=21% Similarity=0.265 Sum_probs=30.2
Q ss_pred HHchhhHHHHHHhcCC-------hhhHHHHHHHHHHHHHhcCCHHHHHHHHHHhc
Q 002318 371 YLDMKEYAAALANCRD-------PLQRDQVYLVQAEAAFATKDFHRAASFYAKIN 418 (936)
Q Consensus 371 ll~~~~f~~Al~~~~~-------~~~~~~I~~~~~~~L~~~g~y~~Aa~~y~~~~ 418 (936)
+..+|+|++|+...+. +.....+....|.-+...|++++|...|.+..
T Consensus 45 ~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al 99 (168)
T CHL00033 45 AQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQAL 99 (168)
T ss_pred HHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4556777777766432 12233466677777777777777777776654
No 476
>PRK14574 hmsH outer membrane protein; Provisional
Probab=25.92 E-value=8.2e+02 Score=31.17 Aligned_cols=122 Identities=11% Similarity=0.067 Sum_probs=69.5
Q ss_pred HHHHHcCChhHHHHHHHhhhh------HHHH--HHHHHhcccHHHHHHHHhCC----CCchhhHHhhHHHHH-hHChHHH
Q 002318 516 KLLESYGRVEELVFFASLKEQ------HEIV--VHHYIQQGEAKKALQMLRKP----AVPIDLQYKFAPDLI-MLDAYET 582 (936)
Q Consensus 516 ~ll~~~g~~e~~l~~a~~~~d------y~~l--l~~yi~~~~~~~AL~~L~~~----~d~~~li~k~~~~Ll-~~~p~~t 582 (936)
.++-..|..++++.+++..-+ +..+ ...|...|+|++|++++.+. ++..+.+.-.+.... ...++++
T Consensus 76 ~l~~~~G~~~~A~~~~eka~~p~n~~~~~llalA~ly~~~gdyd~Aiely~kaL~~dP~n~~~l~gLa~~y~~~~q~~eA 155 (822)
T PRK14574 76 QIAGWAGRDQEVIDVYERYQSSMNISSRGLASAARAYRNEKRWDQALALWQSSLKKDPTNPDLISGMIMTQADAGRGGVV 155 (822)
T ss_pred HHHHHcCCcHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhhcCCHHHH
Confidence 455567999999998887532 3334 45888999999999998764 333344432222222 2456677
Q ss_pred HHHHHccCCCCCCcchhHhhhcCCCCCCCCChHHHHHHHHHHHhhcCCCCHhHHHHH
Q 002318 583 VESWMTTNNLNPRKLIPAMMRYSSEPHAKNETHEVIKYLEFCVHRLHNEDPGVHNLL 639 (936)
Q Consensus 583 i~ll~~~~~ld~~~li~~L~~~~~~~~~~~~~~~~~~YLe~li~~~~~~~~~~hn~l 639 (936)
++.+.+....+|....-.+..|.... ......++..++.++...+.....+.+++
T Consensus 156 l~~l~~l~~~dp~~~~~l~layL~~~--~~~~~~AL~~~ekll~~~P~n~e~~~~~~ 210 (822)
T PRK14574 156 LKQATELAERDPTVQNYMTLSYLNRA--TDRNYDALQASSEAVRLAPTSEEVLKNHL 210 (822)
T ss_pred HHHHHHhcccCcchHHHHHHHHHHHh--cchHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 77776655666653222222221100 01222488888888887665444333333
No 477
>KOG2727 consensus Rab3 GTPase-activating protein, non-catalytic subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=25.87 E-value=3.5e+02 Score=34.06 Aligned_cols=63 Identities=13% Similarity=0.182 Sum_probs=42.1
Q ss_pred ccCCCCceEEEEEecCCCCCCCCcce-----EEEEcCCCcEEEEEEecCCcccceeeEEeeeCCCCCceeeEEEEee
Q 002318 105 LSKLKGLVVNAVAWNRQQITEASTKE-----IILGTDTGQLHEMAVDEKDKREKYIKLLFELNELPEAFMGLQMETA 176 (936)
Q Consensus 105 L~klkg~~I~sVaw~~~~~~~~st~~-----iLiGt~~G~i~e~~i~~~~~~~~~~k~v~~l~~~~~~I~gi~~~~~ 176 (936)
|+.--+-.|||+.|-+-. +.+++|. |.+||..|.++.+.-.+ ..+++++ +. ..||.+++++..
T Consensus 73 l~dpe~e~ITa~~clpl~-n~s~dgr~dwtcVavGt~sGyV~FYTe~G----vllf~Q~--~~--edPVl~lk~r~~ 140 (1244)
T KOG2727|consen 73 LSDPEAESITAIECLPLD-NVSHDGRVDWTCVAVGTSSGYVLFYTETG----VLLFKQI--VH--EDPVLKLKVRGT 140 (1244)
T ss_pred cCCcccceeeeeeeeecc-ccccccccceeEEEEecccceEEEEeccc----HHHHHHH--hc--cCccceEEEEEe
Confidence 444456688888887443 4444444 68999999999987544 3445554 22 267999999864
No 478
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=25.83 E-value=2.6e+02 Score=29.50 Aligned_cols=81 Identities=12% Similarity=0.142 Sum_probs=57.8
Q ss_pred HHchhhHHHHHHhcC----Chh--hHHHHHHHHHHHHHhcCCHHHHHHHHHHhc-----CCCChHHHHHHhcCcChHHHH
Q 002318 371 YLDMKEYAAALANCR----DPL--QRDQVYLVQAEAAFATKDFHRAASFYAKIN-----YILSFEEITLKFISVSEQDAL 439 (936)
Q Consensus 371 ll~~~~f~~Al~~~~----~~~--~~~~I~~~~~~~L~~~g~y~~Aa~~y~~~~-----~~~~~E~v~lkFl~~~~~~~L 439 (936)
|+.+|+|++|++..+ +|. +.......-|-=-+..|+++.|...|.++. .-..+.+.+..-++.++...-
T Consensus 113 LC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~y~~A 192 (250)
T COG3063 113 LCAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLHYKAGDYAPA 192 (250)
T ss_pred HHhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHhcccchHH
Confidence 999999999998854 342 556666777777788999999999999886 123445555555666776666
Q ss_pred HHHHHHHhhccc
Q 002318 440 RTFLLRKLDNLA 451 (936)
Q Consensus 440 ~~YL~~~l~~l~ 451 (936)
..|+........
T Consensus 193 r~~~~~~~~~~~ 204 (250)
T COG3063 193 RLYLERYQQRGG 204 (250)
T ss_pred HHHHHHHHhccc
Confidence 777776555443
No 479
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=25.83 E-value=88 Score=21.15 Aligned_cols=25 Identities=16% Similarity=0.313 Sum_probs=20.4
Q ss_pred hHHHHHHHHHhcccHHHHHHHHhCC
Q 002318 536 QHEIVVHHYIQQGEAKKALQMLRKP 560 (936)
Q Consensus 536 dy~~ll~~yi~~~~~~~AL~~L~~~ 560 (936)
-|+.++..|...|+++.|++++...
T Consensus 3 ty~~ll~a~~~~g~~~~a~~~~~~M 27 (34)
T PF13812_consen 3 TYNALLRACAKAGDPDAALQLFDEM 27 (34)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 3677888999999999999887653
No 480
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=25.73 E-value=9.3e+02 Score=26.58 Aligned_cols=106 Identities=9% Similarity=0.095 Sum_probs=60.0
Q ss_pred eeEEEEeCCEEEEEecCCeEEEEeCCCCCceeeEcCCCCCCccceeEEEeCCCCCeEEEEeecCCCccEEEEe-cCCCCc
Q 002318 24 ITCMSAGNDVIVLGTSKGWLIRHDFGAGDSYDIDLSAGRPGEQSIHKVFVDPGGSHCIATIVGSGGAETFYTH-AKWSKP 102 (936)
Q Consensus 24 i~~l~v~~n~l~l~~~~g~l~ridl~~~~~~~~~l~~~~~~~~~i~~i~lDp~G~hlli~~~~~~~g~~~Y~~-~~~~k~ 102 (936)
..-.+..++...++...|.|||=.=.+..=+.+.-+ ..+.+..+-..+.|..++|+.. |..|-.- .....-
T Consensus 107 ~~i~~l~~~~~~l~~~~G~iy~T~DgG~tW~~~~~~----~~gs~~~~~r~~dG~~vavs~~----G~~~~s~~~G~~~w 178 (302)
T PF14870_consen 107 FGITALGDGSAELAGDRGAIYRTTDGGKTWQAVVSE----TSGSINDITRSSDGRYVAVSSR----GNFYSSWDPGQTTW 178 (302)
T ss_dssp EEEEEEETTEEEEEETT--EEEESSTTSSEEEEE-S--------EEEEEE-TTS-EEEEETT----SSEEEEE-TT-SS-
T ss_pred eEEEEcCCCcEEEEcCCCcEEEeCCCCCCeeEcccC----CcceeEeEEECCCCcEEEEECc----ccEEEEecCCCccc
Confidence 344566788888888999999964433332323222 2367888888899998888865 7775332 222222
Q ss_pred eeccCCCCceEEEEEecCCCCCCCCcceEEEEcCCCcEEEEE
Q 002318 103 RVLSKLKGLVVNAVAWNRQQITEASTKEIILGTDTGQLHEMA 144 (936)
Q Consensus 103 k~L~klkg~~I~sVaw~~~~~~~~st~~iLiGt~~G~i~e~~ 144 (936)
.+-.+.....|.+++|.++ +.+.+.++-|.|+...
T Consensus 179 ~~~~r~~~~riq~~gf~~~-------~~lw~~~~Gg~~~~s~ 213 (302)
T PF14870_consen 179 QPHNRNSSRRIQSMGFSPD-------GNLWMLARGGQIQFSD 213 (302)
T ss_dssp EEEE--SSS-EEEEEE-TT-------S-EEEEETTTEEEEEE
T ss_pred eEEccCccceehhceecCC-------CCEEEEeCCcEEEEcc
Confidence 3333334568999999943 4787888889888876
No 481
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=25.67 E-value=1.4e+03 Score=30.68 Aligned_cols=77 Identities=17% Similarity=0.132 Sum_probs=47.7
Q ss_pred hHHHHHHhcCChhhHHHHHHHHHHHHHhcCCHHHHHHHHHHhc-----CCCChHHHHHHhcCcChHHHHHHHHHHHhhcc
Q 002318 376 EYAAALANCRDPLQRDQVYLVQAEAAFATKDFHRAASFYAKIN-----YILSFEEITLKFISVSEQDALRTFLLRKLDNL 450 (936)
Q Consensus 376 ~f~~Al~~~~~~~~~~~I~~~~~~~L~~~g~y~~Aa~~y~~~~-----~~~~~E~v~lkFl~~~~~~~L~~YL~~~l~~l 450 (936)
=|++|-++|.. -.|+.+-..-|-..++|++|+++|.... ....|-.++--++..++..+....|+.-|..+
T Consensus 1519 VFeRAcqycd~----~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~l 1594 (1710)
T KOG1070|consen 1519 VFERACQYCDA----YTVHLKLLGIYEKSEKNDEADELLRLMLKKFGQTRKVWIMYADFLLRQNEAEAARELLKRALKSL 1594 (1710)
T ss_pred HHHHHHHhcch----HHHHHHHHHHHHHhhcchhHHHHHHHHHHHhcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhc
Confidence 35555555531 2455555555566667888888776554 11345455555566677788888888888888
Q ss_pred cCchhH
Q 002318 451 AKDDKC 456 (936)
Q Consensus 451 ~~~~~~ 456 (936)
++..+.
T Consensus 1595 Pk~eHv 1600 (1710)
T KOG1070|consen 1595 PKQEHV 1600 (1710)
T ss_pred chhhhH
Confidence 775444
No 482
>PF11571 Med27: Mediator complex subunit 27; InterPro: IPR021627 Mediator is a large complex of up to 33 proteins that is conserved from plants to fungi to humans - the number and representation of individual subunits varying with species. It is arranged into four different sections, a core, a head, a tail and a kinase-activity part, and the number of subunits within each of these is what varies with species. Overall, Mediator regulates the transcriptional activity of RNA polymerase II but it would appear that each of the four different sections has a slightly different function []. Mediator exists in two major forms in human cells: a smaller form that interacts strongly with pol II and activates transcription, and a large form that does not interact strongly with pol II and does not directly activate transcription. The ubiquitous expression of Med27 mRNA suggests a universal requirement for Med27 in transcriptional initiation. Loss of Crsp34/Med27 decreases amacrine cell number, but increases the number of rod photoreceptor cells [].
Probab=25.59 E-value=24 Score=31.33 Aligned_cols=32 Identities=19% Similarity=0.335 Sum_probs=20.8
Q ss_pred cccccccchhhhhcccccccccccCCCCCCCCEEEE----cCCChhHHHh
Q 002318 833 DEDCGVCRRKILVAGRDYRMARGYASVGPMAPFYVF----PCGHAFHAQC 878 (936)
Q Consensus 833 ~~~C~~C~k~L~~~~~~~~~~~~~~~~~~~~~fvvF----pCgH~fH~~C 878 (936)
.+.|..||+-|.... - -|=+.+ ...++||..|
T Consensus 54 s~pC~~C~klL~~~~---~-----------LPP~~r~~~~~~~~ayH~~C 89 (90)
T PF11571_consen 54 STPCKKCGKLLSSKA---F-----------LPPVRRPKDFRSWEAYHEGC 89 (90)
T ss_pred cchhhHHHhHhhhcc---c-----------CCCeeecccCCCCcccCccc
Confidence 578999999993210 1 133333 3468999999
No 483
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=25.27 E-value=2.6e+02 Score=33.22 Aligned_cols=65 Identities=18% Similarity=0.194 Sum_probs=46.3
Q ss_pred eeEEEE--eCCEEEEEecCCeEEEEeCCCCCceeeEcCCCCCCccceeEEEeCCCCCeEEEEeecCCCccEEEEec
Q 002318 24 ITCMSA--GNDVIVLGTSKGWLIRHDFGAGDSYDIDLSAGRPGEQSIHKVFVDPGGSHCIATIVGSGGAETFYTHA 97 (936)
Q Consensus 24 i~~l~v--~~n~l~l~~~~g~l~ridl~~~~~~~~~l~~~~~~~~~i~~i~lDp~G~hlli~~~~~~~g~~~Y~~~ 97 (936)
++|.|. ++..+++|..+|+|..+|.+..-+.-...+ -..+.+--.|.|.-++|+++ .|+.-.+..
T Consensus 262 v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~~t~~~ka~------~~P~~iaWHp~gai~~V~s~---qGelQ~FD~ 328 (545)
T PF11768_consen 262 VICCARSPSEDKLVLGCEDGSIILYDTTRGVTLLAKAE------FIPTLIAWHPDGAIFVVGSE---QGELQCFDM 328 (545)
T ss_pred ceEEecCcccceEEEEecCCeEEEEEcCCCeeeeeeec------ccceEEEEcCCCcEEEEEcC---CceEEEEEe
Confidence 455554 456899999999999999944444333333 23466778999999999988 788755543
No 484
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=25.10 E-value=1e+03 Score=26.93 Aligned_cols=62 Identities=11% Similarity=0.056 Sum_probs=43.1
Q ss_pred CCEEEEEecCCeEEEEeC-CCCCceeeEcCCCCCCccceeEEEeCCCCCeEEEEeecCCCccEEEEecCCC
Q 002318 31 NDVIVLGTSKGWLIRHDF-GAGDSYDIDLSAGRPGEQSIHKVFVDPGGSHCIATIVGSGGAETFYTHAKWS 100 (936)
Q Consensus 31 ~n~l~l~~~~g~l~ridl-~~~~~~~~~l~~~~~~~~~i~~i~lDp~G~hlli~~~~~~~g~~~Y~~~~~~ 100 (936)
++.+|++-.+|.|..||+ ....+.++..- .....+-+.|.|++++++... .+..--+.....
T Consensus 48 gr~~yv~~rdg~vsviD~~~~~~v~~i~~G------~~~~~i~~s~DG~~~~v~n~~--~~~v~v~D~~tl 110 (369)
T PF02239_consen 48 GRYLYVANRDGTVSVIDLATGKVVATIKVG------GNPRGIAVSPDGKYVYVANYE--PGTVSVIDAETL 110 (369)
T ss_dssp SSEEEEEETTSEEEEEETTSSSEEEEEE-S------SEEEEEEE--TTTEEEEEEEE--TTEEEEEETTT-
T ss_pred CCEEEEEcCCCeEEEEECCcccEEEEEecC------CCcceEEEcCCCCEEEEEecC--CCceeEeccccc
Confidence 478999999999999999 66666677653 345889999999999887641 355555555443
No 485
>KOG4739 consensus Uncharacterized protein involved in synaptonemal complex formation [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=25.03 E-value=36 Score=35.66 Aligned_cols=30 Identities=37% Similarity=0.792 Sum_probs=24.0
Q ss_pred cccccchhhhhcccccccccccCCCCCCCCEEEEcCCChhHHHhHHH
Q 002318 835 DCGVCRRKILVAGRDYRMARGYASVGPMAPFYVFPCGHAFHAQCLIA 881 (936)
Q Consensus 835 ~C~~C~k~L~~~~~~~~~~~~~~~~~~~~~fvvFpCgH~fH~~CL~~ 881 (936)
.|..|++.=.. . +|+.-.|+|+|-..|..-
T Consensus 5 hCn~C~~~~~~-----~------------~f~LTaC~HvfC~~C~k~ 34 (233)
T KOG4739|consen 5 HCNKCFRFPSQ-----D------------PFFLTACRHVFCEPCLKA 34 (233)
T ss_pred EeccccccCCC-----C------------ceeeeechhhhhhhhccc
Confidence 48888864333 3 999999999999999974
No 486
>COG5222 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=24.86 E-value=45 Score=35.59 Aligned_cols=33 Identities=24% Similarity=0.583 Sum_probs=25.5
Q ss_pred ccccccchhhhhcccccccccccCCCCCCCCEEEEcCCChhHHHhHHHHHh
Q 002318 834 EDCGVCRRKILVAGRDYRMARGYASVGPMAPFYVFPCGHAFHAQCLIAHVT 884 (936)
Q Consensus 834 ~~C~~C~k~L~~~~~~~~~~~~~~~~~~~~~fvvFpCgH~fH~~CL~~~~~ 884 (936)
-+|..|+..|.+ +.--=-|||.|...|+...+.
T Consensus 275 LkCplc~~Llrn------------------p~kT~cC~~~fc~eci~~al~ 307 (427)
T COG5222 275 LKCPLCHCLLRN------------------PMKTPCCGHTFCDECIGTALL 307 (427)
T ss_pred ccCcchhhhhhC------------------cccCccccchHHHHHHhhhhh
Confidence 689999999887 222224999999999996553
No 487
>PRK04043 tolB translocation protein TolB; Provisional
Probab=24.86 E-value=1.1e+03 Score=27.21 Aligned_cols=106 Identities=8% Similarity=-0.011 Sum_probs=59.9
Q ss_pred eCCEEEEEecC----CeEEEEeCCCCCceeeEcCCCCCCccceeEEEeCCCCCe-EEEEeecCCCccEEEEecCCCCcee
Q 002318 30 GNDVIVLGTSK----GWLIRHDFGAGDSYDIDLSAGRPGEQSIHKVFVDPGGSH-CIATIVGSGGAETFYTHAKWSKPRV 104 (936)
Q Consensus 30 ~~n~l~l~~~~----g~l~ridl~~~~~~~~~l~~~~~~~~~i~~i~lDp~G~h-lli~~~~~~~g~~~Y~~~~~~k~k~ 104 (936)
..++.++...+ ..|+..|.++.+...+-- + ..+..-...|.|++ ++.++..+++.+.|-++....+.+.
T Consensus 154 ~~r~~~v~~~~~~~~~~l~~~d~dg~~~~~~~~----~--~~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~ 227 (419)
T PRK04043 154 MKRKVVFSKYTGPKKSNIVLADYTLTYQKVIVK----G--GLNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEK 227 (419)
T ss_pred eeeEEEEEEccCCCcceEEEECCCCCceeEEcc----C--CCeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEE
Confidence 34555555433 367777773333322211 1 24445566799997 5555542224566667776677788
Q ss_pred ccCCCCceEEEEEecCCCCCCCCcceEEEEcC---CCcEEEEEEecC
Q 002318 105 LSKLKGLVVNAVAWNRQQITEASTKEIILGTD---TGQLHEMAVDEK 148 (936)
Q Consensus 105 L~klkg~~I~sVaw~~~~~~~~st~~iLiGt~---~G~i~e~~i~~~ 148 (936)
|...+|. ..+.+|.++ .+.+++... ++.||...+..+
T Consensus 228 lt~~~g~-~~~~~~SPD------G~~la~~~~~~g~~~Iy~~dl~~g 267 (419)
T PRK04043 228 IASSQGM-LVVSDVSKD------GSKLLLTMAPKGQPDIYLYDTNTK 267 (419)
T ss_pred EecCCCc-EEeeEECCC------CCEEEEEEccCCCcEEEEEECCCC
Confidence 8876664 456789843 225555432 356888776543
No 488
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=24.73 E-value=1.7e+02 Score=23.40 Aligned_cols=21 Identities=24% Similarity=0.529 Sum_probs=16.7
Q ss_pred HHHHHHhcccHHHHHHHHhCC
Q 002318 540 VVHHYIQQGEAKKALQMLRKP 560 (936)
Q Consensus 540 ll~~yi~~~~~~~AL~~L~~~ 560 (936)
+...|+..|++++|.+++.+.
T Consensus 31 la~~~~~~g~~~~A~~~l~~~ 51 (68)
T PF14559_consen 31 LAQCYLKQGQYDEAEELLERL 51 (68)
T ss_dssp HHHHHHHTT-HHHHHHHHHCC
T ss_pred HHHHHHHcCCHHHHHHHHHHH
Confidence 667888889999999988876
No 489
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=24.58 E-value=1.2e+03 Score=27.66 Aligned_cols=118 Identities=12% Similarity=0.144 Sum_probs=62.8
Q ss_pred CEEEEEecCCeEEEEeCCCCCceeeEcCCCCCCccceeEEEeCCCCCeEEEEeecCCCccEEEEecCCCCceeccCCCCc
Q 002318 32 DVIVLGTSKGWLIRHDFGAGDSYDIDLSAGRPGEQSIHKVFVDPGGSHCIATIVGSGGAETFYTHAKWSKPRVLSKLKGL 111 (936)
Q Consensus 32 n~l~l~~~~g~l~ridl~~~~~~~~~l~~~~~~~~~i~~i~lDp~G~hlli~~~~~~~g~~~Y~~~~~~k~k~L~klkg~ 111 (936)
.++++|+.+|.+..++....++...-..-.. .+.|+-+-......++-.+.. ++.+-|+..+. +
T Consensus 71 ~~lvlgt~~g~v~~ys~~~g~it~~~st~~h--~~~v~~~~~~~~~~ciyS~~a---d~~v~~~~~~~-----------~ 134 (541)
T KOG4547|consen 71 SMLVLGTPQGSVLLYSVAGGEITAKLSTDKH--YGNVNEILDAQRLGCIYSVGA---DLKVVYILEKE-----------K 134 (541)
T ss_pred eEEEeecCCccEEEEEecCCeEEEEEecCCC--CCcceeeecccccCceEecCC---ceeEEEEeccc-----------c
Confidence 3678999999999999944444322111111 245555554445555555544 67777776533 4
Q ss_pred eEEEEEecCCCCCCCCcceEEE-------EcCCCcEEEEEEecCCcccceeeEEeeeCCCCCceeeEEEEee
Q 002318 112 VVNAVAWNRQQITEASTKEIIL-------GTDTGQLHEMAVDEKDKREKYIKLLFELNELPEAFMGLQMETA 176 (936)
Q Consensus 112 ~I~sVaw~~~~~~~~st~~iLi-------Gt~~G~i~e~~i~~~~~~~~~~k~v~~l~~~~~~I~gi~~~~~ 176 (936)
.+.++.|.... . -.++.+ ++..+.|--..++.. +.+..+++-++||..+.+...
T Consensus 135 ~~~~~~~~~~~-~---~~sl~is~D~~~l~~as~~ik~~~~~~k-------evv~~ftgh~s~v~t~~f~~~ 195 (541)
T KOG4547|consen 135 VIIRIWKEQKP-L---VSSLCISPDGKILLTASRQIKVLDIETK-------EVVITFTGHGSPVRTLSFTTL 195 (541)
T ss_pred eeeeeeccCCC-c---cceEEEcCCCCEEEeccceEEEEEccCc-------eEEEEecCCCcceEEEEEEEe
Confidence 55666665221 1 112222 222333444444332 334455555678988888754
No 490
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=24.17 E-value=1e+03 Score=26.61 Aligned_cols=152 Identities=11% Similarity=0.158 Sum_probs=91.4
Q ss_pred eeEE--EEeCCEEEEEecCCeEEEEeCCCCCceeeEcCCCC-CCccceeEEEeCCCCCeEEEEeecCCCccEEEEecCCC
Q 002318 24 ITCM--SAGNDVIVLGTSKGWLIRHDFGAGDSYDIDLSAGR-PGEQSIHKVFVDPGGSHCIATIVGSGGAETFYTHAKWS 100 (936)
Q Consensus 24 i~~l--~v~~n~l~l~~~~g~l~ridl~~~~~~~~~l~~~~-~~~~~i~~i~lDp~G~hlli~~~~~~~g~~~Y~~~~~~ 100 (936)
.+++ .+....|++|+.+|++.-.-+ .++..+.-.++.. .-..++..+-.|-.-+.+++++. |-..-|.+..+.
T Consensus 71 ~~~~~y~~e~~~L~vg~~ngtvtefs~-sedfnkm~~~r~~~~h~~~v~~~if~~~~e~V~s~~~---dk~~~~hc~e~~ 146 (404)
T KOG1409|consen 71 CSAMEYVSESRRLYVGQDNGTVTEFAL-SEDFNKMTFLKDYLAHQARVSAIVFSLTHEWVLSTGK---DKQFAWHCTESG 146 (404)
T ss_pred ceEeeeeccceEEEEEEecceEEEEEh-hhhhhhcchhhhhhhhhcceeeEEecCCceeEEEecc---ccceEEEeeccC
Confidence 4444 455668999999999999877 1112222233221 11357788888888888888877 555545555443
Q ss_pred CceeccCCCCceEEEEEecCCCCCCCCcceEEEEcCCCcEEEEEEecCCcccceeeEEeeeCCCCCceeeEEEEeeccCC
Q 002318 101 KPRVLSKLKGLVVNAVAWNRQQITEASTKEIILGTDTGQLHEMAVDEKDKREKYIKLLFELNELPEAFMGLQMETASLSN 180 (936)
Q Consensus 101 k~k~L~klkg~~I~sVaw~~~~~~~~st~~iLiGt~~G~i~e~~i~~~~~~~~~~k~v~~l~~~~~~I~gi~~~~~~~~~ 180 (936)
.++-|+..++.+=..+. . -.---+|...|.|--..+... .+..++.+.+-.++|+.+.|...
T Consensus 147 -----~~lg~Y~~~~~~t~~~~-d---~~~~fvGd~~gqvt~lr~~~~-----~~~~i~~~~~h~~~~~~l~Wd~~---- 208 (404)
T KOG1409|consen 147 -----NRLGGYNFETPASALQF-D---ALYAFVGDHSGQITMLKLEQN-----GCQLITTFNGHTGEVTCLKWDPG---- 208 (404)
T ss_pred -----CcccceEeeccCCCCce-e---eEEEEecccccceEEEEEeec-----CCceEEEEcCcccceEEEEEcCC----
Confidence 23456666665544221 1 114456777788877777654 35566677655578999999842
Q ss_pred CceEEEEEECCCeEEEEe
Q 002318 181 GTRYYVMAVTPTRLYSFT 198 (936)
Q Consensus 181 ~~~~~i~ast~~rly~f~ 198 (936)
.+.+..-+.+.++.-|.
T Consensus 209 -~~~LfSg~~d~~vi~wd 225 (404)
T KOG1409|consen 209 -QRLLFSGASDHSVIMWD 225 (404)
T ss_pred -CcEEEeccccCceEEEe
Confidence 24444444566666664
No 491
>PF00130 C1_1: Phorbol esters/diacylglycerol binding domain (C1 domain); InterPro: IPR002219 Diacylglycerol (DAG) is an important second messenger. Phorbol esters (PE) are analogues of DAG and potent tumour promoters that cause a variety of physiological changes when administered to both cells and tissues. DAG activates a family of serine/threonine protein kinases, collectively known as protein kinase C (PKC) []. Phorbol esters can directly stimulate PKC. The N-terminal region of PKC, known as C1, has been shown [] to bind PE and DAG in a phospholipid and zinc-dependent fashion. The C1 region contains one or two copies (depending on the isozyme of PKC) of a cysteine-rich domain, which is about 50 amino-acid residues long, and which is essential for DAG/PE-binding. The DAG/PE-binding domain binds two zinc ions; the ligands of these metal ions are probably the six cysteines and two histidines that are conserved in this domain.; GO: 0035556 intracellular signal transduction; PDB: 1RFH_A 2FNF_X 3PFQ_A 1PTQ_A 1PTR_A 2VRW_B 1XA6_A 2ENN_A 1TBN_A 1TBO_A ....
Probab=24.00 E-value=30 Score=27.03 Aligned_cols=36 Identities=31% Similarity=0.585 Sum_probs=24.2
Q ss_pred cccccccccchhhhhcccccccccccCCCCCCCCEEEE-cCCChhHHHhHHH
Q 002318 831 DRDEDCGVCRRKILVAGRDYRMARGYASVGPMAPFYVF-PCGHAFHAQCLIA 881 (936)
Q Consensus 831 ~~~~~C~~C~k~L~~~~~~~~~~~~~~~~~~~~~fvvF-pCgH~fH~~CL~~ 881 (936)
.....|.+|++.|++.. + +-+.- -|+-.+|.+|+..
T Consensus 9 ~~~~~C~~C~~~i~g~~---~------------~g~~C~~C~~~~H~~C~~~ 45 (53)
T PF00130_consen 9 SKPTYCDVCGKFIWGLG---K------------QGYRCSWCGLVCHKKCLSK 45 (53)
T ss_dssp SSTEB-TTSSSBECSSS---S------------CEEEETTTT-EEETTGGCT
T ss_pred CCCCCCcccCcccCCCC---C------------CeEEECCCCChHhhhhhhh
Confidence 45678999999996621 2 33333 4999999999864
No 492
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=23.84 E-value=9.1e+02 Score=26.58 Aligned_cols=95 Identities=14% Similarity=0.159 Sum_probs=55.6
Q ss_pred EEeCCEEEEEecCCeEEEEeC-CCCCceeeEcCCCCCCccceeEEEeCCCCCeEEEEeecCCCccEEE-EecCCCCceec
Q 002318 28 SAGNDVIVLGTSKGWLIRHDF-GAGDSYDIDLSAGRPGEQSIHKVFVDPGGSHCIATIVGSGGAETFY-THAKWSKPRVL 105 (936)
Q Consensus 28 ~v~~n~l~l~~~~g~l~ridl-~~~~~~~~~l~~~~~~~~~i~~i~lDp~G~hlli~~~~~~~g~~~Y-~~~~~~k~k~L 105 (936)
-++.+.|+-|.=+.+-..||. .++-+. +. .+-+..+++....|+-..++-++. -.+|- +... .....+
T Consensus 281 L~gg~Q~vTaSWDRTAnlwDVEtge~v~----~L-tGHd~ELtHcstHptQrLVvTsSr----DtTFRLWDFR-eaI~sV 350 (481)
T KOG0300|consen 281 LAGGQQMVTASWDRTANLWDVETGEVVN----IL-TGHDSELTHCSTHPTQRLVVTSSR----DTTFRLWDFR-EAIQSV 350 (481)
T ss_pred hcCcceeeeeeccccceeeeeccCceec----cc-cCcchhccccccCCcceEEEEecc----CceeEeccch-hhccee
Confidence 345666666666667777787 333222 11 222578899999998875544444 33343 3332 334455
Q ss_pred cCCCCc--eEEEEEecCCCCCCCCcceEEEEcCCCc
Q 002318 106 SKLKGL--VVNAVAWNRQQITEASTKEIILGTDTGQ 139 (936)
Q Consensus 106 ~klkg~--~I~sVaw~~~~~~~~st~~iLiGt~~G~ 139 (936)
.-+.|+ .|+|+.|+.. -.++-|+.+..
T Consensus 351 ~VFQGHtdtVTS~vF~~d-------d~vVSgSDDrT 379 (481)
T KOG0300|consen 351 AVFQGHTDTVTSVVFNTD-------DRVVSGSDDRT 379 (481)
T ss_pred eeecccccceeEEEEecC-------CceeecCCCce
Confidence 666775 7888888832 15666665553
No 493
>KOG2164 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=23.70 E-value=35 Score=39.57 Aligned_cols=57 Identities=21% Similarity=0.335 Sum_probs=37.9
Q ss_pred cccccccchhhhhcccccccccccCCCCCCCCEEEEcCCChhHHHhHHHHHhhcCCccchHHHHHHHhhhccCCcccccc
Q 002318 833 DEDCGVCRRKILVAGRDYRMARGYASVGPMAPFYVFPCGHAFHAQCLIAHVTQCTNETQVSVVDIVLSYKRLQSGWNTVA 912 (936)
Q Consensus 833 ~~~C~~C~k~L~~~~~~~~~~~~~~~~~~~~~fvvFpCgH~fH~~CL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 912 (936)
...|++|-.+-.. + +.-.|||.|.-.|+..+..-. --..+++++=|+..|-
T Consensus 186 ~~~CPICL~~~~~------------------p-~~t~CGHiFC~~CiLqy~~~s----------~~~~~~~CPiC~s~I~ 236 (513)
T KOG2164|consen 186 DMQCPICLEPPSV------------------P-VRTNCGHIFCGPCILQYWNYS----------AIKGPCSCPICRSTIT 236 (513)
T ss_pred CCcCCcccCCCCc------------------c-cccccCceeeHHHHHHHHhhh----------cccCCccCCchhhhcc
Confidence 7889999865333 1 223499999999999988655 1234566666666665
Q ss_pred cCCccc
Q 002318 913 SGGLHI 918 (936)
Q Consensus 913 ~~~~~~ 918 (936)
-+.++.
T Consensus 237 ~kdl~p 242 (513)
T KOG2164|consen 237 LKDLLP 242 (513)
T ss_pred ccceee
Confidence 544443
No 494
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=23.61 E-value=1.3e+03 Score=28.62 Aligned_cols=112 Identities=11% Similarity=0.098 Sum_probs=60.6
Q ss_pred CccceeEEEeCCCCCeEEEEeecCCCccEEEEecCCCCceeccCCCC---c--eEEEEEecCCCCCCCCcceEEEEcCCC
Q 002318 64 GEQSIHKVFVDPGGSHCIATIVGSGGAETFYTHAKWSKPRVLSKLKG---L--VVNAVAWNRQQITEASTKEIILGTDTG 138 (936)
Q Consensus 64 ~~~~i~~i~lDp~G~hlli~~~~~~~g~~~Y~~~~~~k~k~L~klkg---~--~I~sVaw~~~~~~~~st~~iLiGt~~G 138 (936)
+...+..+-+||+..|+++... +-..-..+.++-|.+.+ +|| + ..--|-.+|. .--+...+++-
T Consensus 595 ~ktTlYDm~Vdp~~k~v~t~cQ---Drnirif~i~sgKq~k~--FKgs~~~eG~lIKv~lDPS------giY~atScsdk 663 (1080)
T KOG1408|consen 595 SKTTLYDMAVDPTSKLVVTVCQ---DRNIRIFDIESGKQVKS--FKGSRDHEGDLIKVILDPS------GIYLATSCSDK 663 (1080)
T ss_pred ccceEEEeeeCCCcceEEEEec---ccceEEEeccccceeee--ecccccCCCceEEEEECCC------ccEEEEeecCC
Confidence 3578999999999999877766 55554445444432222 233 1 1112233321 11222222333
Q ss_pred cEEEEEEecCCcccceeeEEeeeCCCCCceeeEEEEeeccCCCceEEEEEECCCeEEEEe
Q 002318 139 QLHEMAVDEKDKREKYIKLLFELNELPEAFMGLQMETASLSNGTRYYVMAVTPTRLYSFT 198 (936)
Q Consensus 139 ~i~e~~i~~~~~~~~~~k~v~~l~~~~~~I~gi~~~~~~~~~~~~~~i~ast~~rly~f~ 198 (936)
.|-.+..-.++ -+-++| +-.+.|||+.|. ++-+.+|-|+....++-|.
T Consensus 664 tl~~~Df~sgE----cvA~m~---GHsE~VTG~kF~-----nDCkHlISvsgDgCIFvW~ 711 (1080)
T KOG1408|consen 664 TLCFVDFVSGE----CVAQMT---GHSEAVTGVKFL-----NDCKHLISVSGDGCIFVWK 711 (1080)
T ss_pred ceEEEEeccch----hhhhhc---Ccchheeeeeec-----ccchhheeecCCceEEEEE
Confidence 33333222210 112222 112569999997 5568888889989999895
No 495
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=23.55 E-value=1.1e+02 Score=19.11 Aligned_cols=26 Identities=19% Similarity=0.276 Sum_probs=21.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhc
Q 002318 393 VYLVQAEAAFATKDFHRAASFYAKIN 418 (936)
Q Consensus 393 I~~~~~~~L~~~g~y~~Aa~~y~~~~ 418 (936)
+....|.-++..|+|++|...|.++.
T Consensus 3 ~~~~~a~~~~~~~~~~~a~~~~~~~~ 28 (34)
T smart00028 3 ALYNLGNAYLKLGDYDEALEYYEKAL 28 (34)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 45677888899999999999887765
No 496
>KOG0826 consensus Predicted E3 ubiquitin ligase involved in peroxisome organization [Posttranslational modification, protein turnover, chaperones]
Probab=23.35 E-value=43 Score=36.56 Aligned_cols=38 Identities=26% Similarity=0.430 Sum_probs=33.2
Q ss_pred cccccccchhhhhcccccccccccCCCCCCCCEEEEcCCChhHHHhHHHHHhhcCC
Q 002318 833 DEDCGVCRRKILVAGRDYRMARGYASVGPMAPFYVFPCGHAFHAQCLIAHVTQCTN 888 (936)
Q Consensus 833 ~~~C~~C~k~L~~~~~~~~~~~~~~~~~~~~~fvvFpCgH~fH~~CL~~~~~~~~~ 888 (936)
...|.+|-|...+ |-+++--|-+|...|...++.++..
T Consensus 300 ~~~CpvClk~r~N------------------ptvl~vSGyVfCY~Ci~~Yv~~~~~ 337 (357)
T KOG0826|consen 300 REVCPVCLKKRQN------------------PTVLEVSGYVFCYPCIFSYVVNYGH 337 (357)
T ss_pred cccChhHHhccCC------------------CceEEecceEEeHHHHHHHHHhcCC
Confidence 4679999999888 8899999999999999999976543
No 497
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=23.30 E-value=1.1e+02 Score=24.51 Aligned_cols=23 Identities=17% Similarity=0.293 Sum_probs=21.0
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhc
Q 002318 396 VQAEAAFATKDFHRAASFYAKIN 418 (936)
Q Consensus 396 ~~~~~L~~~g~y~~Aa~~y~~~~ 418 (936)
..|..++..|+|++|...|.+..
T Consensus 2 ~~a~~~~~~g~~~~A~~~~~~~l 24 (65)
T PF13432_consen 2 ALARALYQQGDYDEAIAAFEQAL 24 (65)
T ss_dssp HHHHHHHHCTHHHHHHHHHHHHH
T ss_pred hHHHHHHHcCCHHHHHHHHHHHH
Confidence 46889999999999999999986
No 498
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=23.17 E-value=98 Score=21.77 Aligned_cols=32 Identities=19% Similarity=0.254 Sum_probs=22.4
Q ss_pred HHHHHHhcCChhhHHHHHHHHHHHHHhcCCHHHHH
Q 002318 377 YAAALANCRDPLQRDQVYLVQAEAAFATKDFHRAA 411 (936)
Q Consensus 377 f~~Al~~~~~~~~~~~I~~~~~~~L~~~g~y~~Aa 411 (936)
|.+|+++--+ =......+|..|...|++++|.
T Consensus 2 y~kAie~~P~---n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 2 YKKAIELNPN---NAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred hHHHHHHCCC---CHHHHHHHHHHHHHCcCHHhhc
Confidence 5677776432 2345667788888999999885
No 499
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=23.13 E-value=2.7e+02 Score=19.37 Aligned_cols=34 Identities=0% Similarity=0.081 Sum_probs=23.5
Q ss_pred eeCCCCCceeeEEEEeeccCCCceEEEEEECCCeEEEEe
Q 002318 160 ELNELPEAFMGLQMETASLSNGTRYYVMAVTPTRLYSFT 198 (936)
Q Consensus 160 ~l~~~~~~I~gi~~~~~~~~~~~~~~i~ast~~rly~f~ 198 (936)
.+.+-.++|.+|.|.. ..++++-++.+..+..|.
T Consensus 6 ~~~~h~~~i~~i~~~~-----~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 6 TFRGHSSSINSIAWSP-----DGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEESSSSSEEEEEEET-----TSSEEEEEETTSEEEEEE
T ss_pred EEcCCCCcEEEEEEec-----ccccceeeCCCCEEEEEC
Confidence 3433347899999984 346788777778887663
No 500
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=23.03 E-value=1.1e+03 Score=26.41 Aligned_cols=54 Identities=22% Similarity=0.358 Sum_probs=39.9
Q ss_pred hhHHHHHHchhhHHHHHHhcCC---------hhhHHHHHHHHHHHHHhcCCHHHHHHHHHHhc
Q 002318 365 RDMWKVYLDMKEYAAALANCRD---------PLQRDQVYLVQAEAAFATKDFHRAASFYAKIN 418 (936)
Q Consensus 365 ~~~W~~ll~~~~f~~Al~~~~~---------~~~~~~I~~~~~~~L~~~g~y~~Aa~~y~~~~ 418 (936)
+.-..+|-.-.++++|++.|+. ..++.+..-..|+.+..+.+++.|...+.+..
T Consensus 145 qqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAl 207 (389)
T COG2956 145 QQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKKAL 207 (389)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHH
Confidence 4445567777899999988762 12456667778888888889999888887764
Done!