Query 002318
Match_columns 936
No_of_seqs 277 out of 830
Neff 8.2
Searched_HMMs 29240
Date Mon Mar 25 21:30:35 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002318.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/002318hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1xi4_A Clathrin heavy chain; a 99.4 4.7E-11 1.6E-15 148.6 29.8 372 365-792 1053-1456(1630)
2 1b89_A Protein (clathrin heavy 99.2 2.6E-10 9E-15 128.7 17.8 366 371-793 12-384 (449)
3 1xi4_A Clathrin heavy chain; a 99.2 3.3E-07 1.1E-11 114.7 46.3 366 289-717 260-641 (1630)
4 3mkq_A Coatomer beta'-subunit; 98.6 0.00059 2E-08 84.0 46.1 92 22-121 185-281 (814)
5 3lvg_A Clathrin heavy chain 1; 98.3 1.7E-08 6E-13 112.0 -4.8 358 371-807 180-567 (624)
6 1b89_A Protein (clathrin heavy 98.2 2.1E-05 7.1E-10 88.9 17.8 169 500-701 261-449 (449)
7 1gxr_A ESG1, transducin-like e 98.2 0.0019 6.4E-08 69.5 32.0 157 21-199 51-212 (337)
8 1bpo_A Protein (clathrin); cla 98.0 0.0081 2.8E-07 66.9 32.2 363 29-450 33-425 (494)
9 3lvg_A Clathrin heavy chain 1; 98.0 1.2E-08 4.1E-13 113.3 -14.3 315 375-743 39-363 (624)
10 1gxr_A ESG1, transducin-like e 97.8 0.00085 2.9E-08 72.2 20.6 149 21-198 183-334 (337)
11 1r5m_A SIR4-interacting protei 97.8 0.0045 1.6E-07 68.8 27.2 151 21-198 108-275 (425)
12 4a11_B DNA excision repair pro 97.8 0.048 1.7E-06 60.0 35.3 161 21-199 43-216 (408)
13 1sq9_A Antiviral protein SKI8; 97.8 0.018 6.1E-07 63.6 31.6 162 20-199 15-214 (397)
14 4aez_A CDC20, WD repeat-contai 97.8 0.016 5.6E-07 64.6 31.4 149 24-199 96-246 (401)
15 3k26_A Polycomb protein EED; W 97.8 0.00035 1.2E-08 76.3 16.6 163 20-200 17-191 (366)
16 3mkq_A Coatomer beta'-subunit; 97.7 0.0089 3E-07 73.3 30.4 153 21-198 13-169 (814)
17 4ery_A WD repeat-containing pr 97.7 0.0016 5.4E-08 70.0 20.9 152 21-199 23-178 (312)
18 1sq9_A Antiviral protein SKI8; 97.7 0.0013 4.3E-08 73.1 20.3 162 21-198 186-392 (397)
19 3zwl_B Eukaryotic translation 97.7 0.027 9.3E-07 60.9 30.9 158 21-199 32-204 (369)
20 3jrp_A Fusion protein of prote 97.7 0.0023 7.7E-08 70.1 22.0 167 21-199 55-238 (379)
21 1k8k_C P40, ARP2/3 complex 41 97.7 0.00093 3.2E-08 73.3 18.8 156 21-198 8-170 (372)
22 3ow8_A WD repeat-containing pr 97.7 0.0015 5E-08 71.2 19.5 152 21-198 80-234 (321)
23 3ow8_A WD repeat-containing pr 97.7 0.0019 6.5E-08 70.3 20.1 149 22-198 165-318 (321)
24 2ovr_B FBW7, F-BOX/WD repeat p 97.7 0.049 1.7E-06 61.5 32.8 146 21-198 159-305 (445)
25 1got_B GT-beta; complex (GTP-b 97.7 0.0016 5.4E-08 71.4 19.5 151 21-197 184-339 (340)
26 3odt_A Protein DOA1; ubiquitin 97.6 0.039 1.3E-06 58.2 29.5 149 21-198 18-171 (313)
27 3f3f_A Nucleoporin SEH1; struc 97.6 0.004 1.4E-07 66.7 21.8 169 20-198 109-334 (351)
28 1r5m_A SIR4-interacting protei 97.6 0.0017 5.9E-08 72.3 19.1 157 21-197 247-421 (425)
29 1k8k_C P40, ARP2/3 complex 41 97.6 0.0036 1.2E-07 68.5 21.2 163 20-199 51-231 (372)
30 4aez_A CDC20, WD repeat-contai 97.6 0.0022 7.4E-08 71.9 19.7 152 20-198 175-333 (401)
31 4ery_A WD repeat-containing pr 97.6 0.0049 1.7E-07 66.1 21.7 152 21-198 65-220 (312)
32 3zwl_B Eukaryotic translation 97.6 0.0023 7.9E-08 69.7 19.1 153 21-199 74-247 (369)
33 3ei3_B DNA damage-binding prot 97.6 0.0048 1.7E-07 68.2 21.7 161 20-199 117-280 (383)
34 3ei3_B DNA damage-binding prot 97.5 0.0025 8.6E-08 70.6 18.8 155 21-199 73-234 (383)
35 3jrp_A Fusion protein of prote 97.5 0.0062 2.1E-07 66.6 21.4 163 20-198 100-284 (379)
36 1vyh_C Platelet-activating fac 97.5 0.0044 1.5E-07 69.9 20.6 150 21-198 108-262 (410)
37 2pbi_B Guanine nucleotide-bind 97.5 0.0045 1.6E-07 68.2 20.2 150 22-197 197-353 (354)
38 3k26_A Polycomb protein EED; W 97.5 0.0015 5.1E-08 71.2 15.8 156 22-199 70-258 (366)
39 1vyh_C Platelet-activating fac 97.5 0.0056 1.9E-07 69.0 21.0 159 21-199 192-367 (410)
40 1got_B GT-beta; complex (GTP-b 97.5 0.0074 2.5E-07 65.9 21.4 155 21-199 143-299 (340)
41 2ynn_A Coatomer subunit beta'; 97.4 0.0057 2E-07 65.6 19.9 153 20-198 12-169 (304)
42 2hes_X YDR267CP; beta-propelle 97.4 0.011 3.8E-07 64.3 22.3 161 20-198 13-181 (330)
43 4gqb_B Methylosome protein 50; 97.4 0.0043 1.5E-07 68.3 19.1 155 21-199 127-287 (344)
44 3odt_A Protein DOA1; ubiquitin 97.4 0.0042 1.5E-07 65.9 18.3 149 20-198 103-252 (313)
45 2aq5_A Coronin-1A; WD40 repeat 97.4 0.0068 2.3E-07 67.7 20.8 155 21-199 81-252 (402)
46 3jro_A Fusion protein of prote 97.4 0.0046 1.6E-07 75.8 20.9 165 21-199 53-236 (753)
47 3frx_A Guanine nucleotide-bind 97.4 0.01 3.5E-07 64.2 21.5 158 21-199 65-225 (319)
48 3f3f_A Nucleoporin SEH1; struc 97.4 0.0063 2.2E-07 65.2 19.7 162 20-198 56-246 (351)
49 4g56_B MGC81050 protein; prote 97.4 0.0047 1.6E-07 68.2 18.6 155 21-199 139-299 (357)
50 4gga_A P55CDC, cell division c 97.4 0.082 2.8E-06 59.3 29.3 143 30-199 115-259 (420)
51 1pgu_A Actin interacting prote 97.4 0.004 1.4E-07 73.4 18.8 160 21-198 446-611 (615)
52 3i2n_A WD repeat-containing pr 97.3 0.019 6.5E-07 62.1 22.7 165 20-198 110-288 (357)
53 3fm0_A Protein CIAO1; WDR39,SG 97.3 0.0095 3.2E-07 65.3 20.2 156 23-198 18-178 (345)
54 3i2n_A WD repeat-containing pr 97.3 0.0059 2E-07 66.2 18.4 157 23-198 166-350 (357)
55 3sfz_A APAF-1, apoptotic pepti 97.3 0.047 1.6E-06 70.6 29.6 153 21-198 615-771 (1249)
56 3dwl_C Actin-related protein 2 97.3 0.0046 1.6E-07 68.1 17.4 161 20-198 54-233 (377)
57 4aow_A Guanine nucleotide-bind 97.3 0.19 6.7E-06 53.6 29.7 161 21-199 38-202 (340)
58 3dwl_C Actin-related protein 2 97.3 0.0011 3.9E-08 73.0 12.0 154 21-198 11-174 (377)
59 2xpi_A Anaphase-promoting comp 97.3 0.15 5.3E-06 59.5 31.1 216 512-760 343-574 (597)
60 1p22_A F-BOX/WD-repeat protein 97.3 0.012 4E-07 66.7 20.6 149 22-199 134-283 (435)
61 1yfq_A Cell cycle arrest prote 97.3 0.0069 2.4E-07 65.4 18.0 152 21-198 56-222 (342)
62 4a11_B DNA excision repair pro 97.3 0.016 5.6E-07 63.8 21.4 159 22-199 142-363 (408)
63 2xzm_R RACK1; ribosome, transl 97.2 0.026 9E-07 61.5 22.6 158 21-199 76-242 (343)
64 2ymu_A WD-40 repeat protein; u 97.2 0.0083 2.8E-07 70.3 19.7 150 21-198 426-577 (577)
65 4e54_B DNA damage-binding prot 97.2 0.0037 1.3E-07 70.9 16.1 154 21-198 119-279 (435)
66 2pm9_A Protein WEB1, protein t 97.2 0.0062 2.1E-07 67.8 17.7 159 21-198 165-334 (416)
67 3vl1_A 26S proteasome regulato 97.2 0.017 5.7E-07 64.5 21.2 161 20-199 138-320 (420)
68 2pm7_B Protein transport prote 97.2 0.031 1.1E-06 59.5 22.6 164 21-198 53-235 (297)
69 3fm0_A Protein CIAO1; WDR39,SG 97.2 0.031 1.1E-06 61.0 22.4 156 21-198 61-222 (345)
70 3mmy_A MRNA export factor; mRN 97.2 0.0097 3.3E-07 64.6 18.0 151 20-198 38-196 (368)
71 1yfq_A Cell cycle arrest prote 97.2 0.015 5.2E-07 62.6 19.4 133 20-172 149-301 (342)
72 3v7d_B Cell division control p 97.2 0.32 1.1E-05 54.8 31.4 156 24-199 125-297 (464)
73 3iz6_a 40S ribosomal protein R 97.1 0.013 4.5E-07 65.1 18.9 154 22-198 206-372 (380)
74 2xyi_A Probable histone-bindin 97.1 0.0092 3.2E-07 67.6 17.9 158 21-199 128-307 (430)
75 4gqb_B Methylosome protein 50; 97.1 0.024 8.1E-07 62.3 20.3 157 22-198 83-243 (344)
76 2ynn_A Coatomer subunit beta'; 97.1 0.027 9.3E-07 60.2 20.3 156 22-199 56-215 (304)
77 2ymu_A WD-40 repeat protein; u 97.1 0.016 5.6E-07 67.7 19.9 150 21-198 385-536 (577)
78 1p22_A F-BOX/WD-repeat protein 97.1 0.018 6.2E-07 65.1 19.4 148 21-198 213-362 (435)
79 2ovr_B FBW7, F-BOX/WD repeat p 97.0 0.023 8E-07 64.2 20.3 146 20-198 198-345 (445)
80 1erj_A Transcriptional repress 97.0 0.023 8E-07 63.3 19.8 153 23-198 125-284 (393)
81 2pbi_B Guanine nucleotide-bind 97.0 0.051 1.7E-06 59.6 22.1 154 21-198 154-312 (354)
82 4g56_B MGC81050 protein; prote 97.0 0.013 4.4E-07 64.7 17.1 161 20-198 93-255 (357)
83 2xpi_A Anaphase-promoting comp 97.0 0.07 2.4E-06 62.5 24.4 61 690-761 481-541 (597)
84 3v7d_B Cell division control p 97.0 0.02 6.9E-07 65.0 19.1 146 21-198 270-418 (464)
85 1w3b_A UDP-N-acetylglucosamine 97.0 0.092 3.1E-06 57.8 23.9 330 370-761 8-364 (388)
86 3jro_A Fusion protein of prote 97.0 0.01 3.5E-07 72.8 17.3 162 21-198 99-282 (753)
87 2xyi_A Probable histone-bindin 96.9 0.04 1.4E-06 62.2 21.0 161 21-198 231-407 (430)
88 2aq5_A Coronin-1A; WD40 repeat 96.9 0.016 5.5E-07 64.6 17.5 154 24-199 37-205 (402)
89 4aow_A Guanine nucleotide-bind 96.9 0.022 7.6E-07 61.1 17.9 155 21-198 171-334 (340)
90 1pgu_A Actin interacting prote 96.9 0.018 6.2E-07 67.6 18.6 153 20-198 62-235 (615)
91 3vl1_A 26S proteasome regulato 96.9 0.015 5.3E-07 64.8 16.6 147 26-199 63-210 (420)
92 3gre_A Serine/threonine-protei 96.9 0.039 1.3E-06 62.0 19.9 161 20-198 167-356 (437)
93 2pm9_A Protein WEB1, protein t 96.9 0.011 3.8E-07 65.7 15.1 161 20-198 112-291 (416)
94 2xzm_R RACK1; ribosome, transl 96.8 0.038 1.3E-06 60.2 19.1 151 21-198 162-337 (343)
95 2hes_X YDR267CP; beta-propelle 96.8 0.076 2.6E-06 57.5 21.4 162 22-198 108-277 (330)
96 4e54_B DNA damage-binding prot 96.8 0.011 3.8E-07 67.0 15.2 157 21-199 164-325 (435)
97 2vdu_B TRNA (guanine-N(7)-)-me 96.8 0.024 8.1E-07 64.5 17.9 155 23-198 104-268 (450)
98 3dm0_A Maltose-binding peripla 96.8 0.038 1.3E-06 66.7 20.5 155 21-199 430-590 (694)
99 3gre_A Serine/threonine-protei 96.8 0.018 6E-07 64.9 16.0 160 21-199 63-243 (437)
100 3mmy_A MRNA export factor; mRN 96.7 0.054 1.8E-06 58.5 18.8 147 21-190 170-335 (368)
101 2oaj_A Protein SNI1; WD40 repe 96.7 0.031 1E-06 70.0 18.8 154 21-199 58-240 (902)
102 2vdu_B TRNA (guanine-N(7)-)-me 96.7 0.064 2.2E-06 60.8 20.0 113 21-148 149-272 (450)
103 3frx_A Guanine nucleotide-bind 96.7 0.063 2.2E-06 57.8 19.1 160 21-199 17-183 (319)
104 3ieg_A DNAJ homolog subfamily 96.6 0.12 4E-06 55.5 20.9 49 370-418 12-64 (359)
105 2pm7_B Protein transport prote 96.6 0.13 4.4E-06 54.7 20.6 161 21-198 9-186 (297)
106 3bws_A Protein LP49; two-domai 96.6 0.77 2.6E-05 51.0 27.8 154 22-198 123-289 (433)
107 3vgz_A Uncharacterized protein 96.5 1 3.6E-05 48.1 27.7 151 23-199 42-213 (353)
108 3dw8_B Serine/threonine-protei 96.5 0.05 1.7E-06 61.0 17.5 118 20-148 225-374 (447)
109 4ayc_A E3 ubiquitin-protein li 96.5 0.0048 1.6E-07 58.4 7.4 34 832-884 52-85 (138)
110 1erj_A Transcriptional repress 96.4 0.15 5.1E-06 56.6 20.7 159 21-199 165-339 (393)
111 3dw8_B Serine/threonine-protei 96.4 0.058 2E-06 60.5 16.9 162 21-199 28-256 (447)
112 3dm0_A Maltose-binding peripla 96.4 0.066 2.3E-06 64.6 18.4 155 21-198 382-547 (694)
113 2gw1_A Mitochondrial precursor 96.3 0.42 1.4E-05 54.2 24.1 47 370-418 15-66 (514)
114 2ecm_A Ring finger and CHY zin 96.3 0.001 3.5E-08 51.9 1.2 39 832-885 4-42 (55)
115 4ggc_A P55CDC, cell division c 96.2 1.4 4.9E-05 46.0 29.9 146 25-198 29-178 (318)
116 1l0q_A Surface layer protein; 96.2 1.9 6.5E-05 46.9 28.6 139 33-199 4-145 (391)
117 3bg1_A Protein SEC13 homolog; 96.2 0.081 2.8E-06 56.8 16.1 163 21-198 103-290 (316)
118 3e5z_A Putative gluconolactona 96.2 1.1 3.7E-05 47.0 24.7 94 24-133 30-130 (296)
119 4h5i_A Guanine nucleotide-exch 96.1 0.12 4E-06 57.0 17.5 153 24-199 136-298 (365)
120 4a2l_A BT_4663, two-component 96.1 2.4 8.1E-05 51.8 31.0 283 21-362 356-659 (795)
121 3sfz_A APAF-1, apoptotic pepti 96.1 0.032 1.1E-06 72.1 14.7 149 22-198 962-1113(1249)
122 3lrv_A PRE-mRNA-splicing facto 96.1 0.066 2.3E-06 58.2 15.1 152 23-199 78-242 (343)
123 1nr0_A Actin interacting prote 96.1 0.25 8.6E-06 58.5 21.3 155 21-199 59-219 (611)
124 3lrv_A PRE-mRNA-splicing facto 96.1 0.12 4.1E-06 56.1 16.9 111 22-146 126-243 (343)
125 1chc_A Equine herpes virus-1 r 96.1 0.0013 4.5E-08 53.9 0.7 37 831-885 3-39 (68)
126 1w3b_A UDP-N-acetylglucosamine 96.0 0.35 1.2E-05 53.0 20.8 292 369-708 41-363 (388)
127 2y4t_A DNAJ homolog subfamily 96.0 0.49 1.7E-05 52.8 22.3 275 369-659 34-355 (450)
128 2kiz_A E3 ubiquitin-protein li 96.0 0.0025 8.4E-08 52.4 2.2 39 831-885 12-50 (69)
129 2oaj_A Protein SNI1; WD40 repe 96.0 0.14 4.8E-06 63.9 19.2 154 21-198 17-179 (902)
130 3vu4_A KMHSV2; beta-propeller 96.0 0.35 1.2E-05 52.8 20.2 106 29-148 145-272 (355)
131 2ep4_A Ring finger protein 24; 96.0 0.0026 8.9E-08 53.0 2.1 40 830-885 12-51 (74)
132 1l0q_A Surface layer protein; 95.9 0.34 1.2E-05 53.1 20.1 150 22-199 74-231 (391)
133 3bws_A Protein LP49; two-domai 95.9 0.19 6.6E-06 56.0 18.1 151 21-198 169-331 (433)
134 3vu4_A KMHSV2; beta-propeller 95.9 0.11 3.8E-06 56.9 15.8 116 21-148 195-337 (355)
135 1iym_A EL5; ring-H2 finger, ub 95.9 0.0015 5.1E-08 51.0 0.2 40 830-885 2-42 (55)
136 2ysj_A Tripartite motif-contai 95.8 0.0026 9E-08 51.2 1.5 37 830-885 17-53 (63)
137 3v9f_A Two-component system se 95.8 3.9 0.00013 49.7 30.5 285 22-363 313-612 (781)
138 3fp2_A TPR repeat-containing p 95.7 0.74 2.5E-05 52.6 22.7 204 517-761 252-487 (537)
139 3hxj_A Pyrrolo-quinoline quino 95.7 0.9 3.1E-05 48.2 21.9 58 298-363 266-324 (330)
140 3bg1_A Protein SEC13 homolog; 95.7 0.22 7.6E-06 53.3 16.8 168 21-199 57-245 (316)
141 2ea6_A Ring finger protein 4; 95.7 0.0045 1.6E-07 50.6 2.5 43 831-885 13-55 (69)
142 4a2l_A BT_4663, two-component 95.7 4.1 0.00014 49.6 30.1 285 22-363 310-615 (795)
143 3iz6_a 40S ribosomal protein R 95.6 0.28 9.6E-06 54.1 17.8 158 22-199 158-327 (380)
144 1x4j_A Ring finger protein 38; 95.6 0.0025 8.6E-08 53.4 0.7 38 832-885 22-59 (75)
145 3ng2_A RNF4, snurf, ring finge 95.6 0.0031 1.1E-07 52.0 1.0 43 831-885 8-50 (71)
146 2ecl_A Ring-box protein 2; RNF 95.5 0.0043 1.5E-07 52.8 1.7 50 832-886 14-64 (81)
147 2l0b_A E3 ubiquitin-protein li 95.4 0.0043 1.5E-07 54.2 1.5 38 832-885 39-76 (91)
148 2xeu_A Ring finger protein 4; 95.4 0.0062 2.1E-07 48.9 2.4 41 833-885 3-43 (64)
149 1xip_A Nucleoporin NUP159; bet 95.4 0.69 2.3E-05 51.5 19.6 125 24-174 90-222 (388)
150 2oit_A Nucleoporin 214KDA; NH2 95.4 0.14 4.7E-06 58.1 14.4 114 22-146 93-222 (434)
151 3sf4_A G-protein-signaling mod 95.3 3.6 0.00012 44.5 25.6 49 370-418 18-74 (406)
152 2ect_A Ring finger protein 126 95.3 0.0033 1.1E-07 53.0 0.4 39 831-885 13-51 (78)
153 1nr0_A Actin interacting prote 95.3 0.72 2.4E-05 54.5 21.0 112 21-146 147-269 (611)
154 4gga_A P55CDC, cell division c 95.3 1.3 4.3E-05 49.4 22.1 151 21-198 189-350 (420)
155 2hqs_A Protein TOLB; TOLB, PAL 95.2 0.99 3.4E-05 50.5 20.8 154 20-198 177-341 (415)
156 4h5i_A Guanine nucleotide-exch 95.1 0.51 1.8E-05 51.8 17.7 153 21-198 176-340 (365)
157 3ro2_A PINS homolog, G-protein 95.1 2.6 8.9E-05 43.9 22.8 49 370-418 14-70 (338)
158 2j04_A TAU60, YPL007P, hypothe 95.1 0.44 1.5E-05 55.5 17.3 154 21-199 85-252 (588)
159 2hqs_A Protein TOLB; TOLB, PAL 95.1 0.81 2.8E-05 51.2 19.4 133 41-198 159-297 (415)
160 2djb_A Polycomb group ring fin 95.1 0.0059 2E-07 50.6 1.1 38 830-885 12-49 (72)
161 2ysl_A Tripartite motif-contai 95.0 0.0054 1.8E-07 50.9 0.7 36 830-884 17-52 (73)
162 3g4e_A Regucalcin; six bladed 95.0 0.5 1.7E-05 50.1 16.5 87 31-135 25-115 (297)
163 2ecj_A Tripartite motif-contai 94.9 0.0053 1.8E-07 48.3 0.5 35 831-884 13-47 (58)
164 1g25_A CDK-activating kinase a 94.9 0.012 4.2E-07 47.5 2.7 37 833-884 3-40 (65)
165 2ojh_A Uncharacterized protein 94.9 1.5 5E-05 45.0 19.7 155 21-198 41-203 (297)
166 2ct2_A Tripartite motif protei 94.9 0.01 3.4E-07 51.1 2.2 42 830-886 12-53 (88)
167 2ojh_A Uncharacterized protein 94.8 0.64 2.2E-05 47.8 16.5 146 23-190 130-291 (297)
168 3vgz_A Uncharacterized protein 94.7 0.8 2.7E-05 49.0 17.7 158 24-198 91-259 (353)
169 4a1s_A PINS, partner of inscut 94.7 3.1 0.00011 45.4 23.0 50 369-418 56-113 (411)
170 2j04_B YDR362CP, TAU91; beta p 94.7 0.19 6.4E-06 58.7 13.2 151 22-198 267-425 (524)
171 2d8t_A Dactylidin, ring finger 94.7 0.0082 2.8E-07 49.6 1.0 34 832-884 14-47 (71)
172 2y4t_A DNAJ homolog subfamily 94.7 1.8 6E-05 48.1 20.9 243 390-659 25-321 (450)
173 3dpl_R Ring-box protein 1; ubi 94.7 0.014 4.8E-07 52.3 2.6 53 832-885 36-88 (106)
174 3ieg_A DNAJ homolog subfamily 94.7 1 3.4E-05 47.9 18.2 81 369-449 79-183 (359)
175 2c2l_A CHIP, carboxy terminus 94.6 0.29 1E-05 51.7 13.3 78 614-709 20-97 (281)
176 3hym_B Cell division cycle pro 94.6 1.9 6.5E-05 45.2 19.9 79 614-709 209-295 (330)
177 2oit_A Nucleoporin 214KDA; NH2 94.4 0.8 2.7E-05 51.8 17.3 100 22-136 150-259 (434)
178 4ggc_A P55CDC, cell division c 94.4 1.1 3.6E-05 47.1 17.4 156 23-198 152-312 (318)
179 3hym_B Cell division cycle pro 94.4 1.1 3.8E-05 47.0 17.6 249 369-643 30-314 (330)
180 1t1h_A Gspef-atpub14, armadill 94.4 0.011 3.7E-07 49.7 1.2 37 830-885 5-41 (78)
181 1pby_B Quinohemoprotein amine 94.2 4 0.00014 42.9 21.6 141 32-198 2-160 (337)
182 2yur_A Retinoblastoma-binding 94.2 0.011 3.9E-07 49.2 0.9 37 830-885 12-49 (74)
183 2ckl_A Polycomb group ring fin 94.2 0.012 3.9E-07 53.1 1.0 37 831-885 13-49 (108)
184 2j04_A TAU60, YPL007P, hypothe 94.2 0.59 2E-05 54.5 15.5 150 23-197 131-295 (588)
185 3mkr_A Coatomer subunit epsilo 94.1 0.64 2.2E-05 49.3 14.9 48 369-416 7-59 (291)
186 2ecw_A Tripartite motif-contai 94.1 0.017 5.8E-07 49.2 1.9 37 830-885 16-52 (85)
187 2y43_A E3 ubiquitin-protein li 94.0 0.0078 2.7E-07 53.3 -0.5 36 832-885 21-56 (99)
188 1v87_A Deltex protein 2; ring- 94.0 0.013 4.4E-07 53.4 0.9 52 832-884 24-75 (114)
189 1xnf_A Lipoprotein NLPI; TPR, 94.0 1.1 3.7E-05 45.8 15.9 28 390-417 42-69 (275)
190 1pjx_A Dfpase, DIISOPROPYLFLUO 94.0 6.9 0.00024 40.8 26.3 104 23-137 19-136 (314)
191 3lrq_A E3 ubiquitin-protein li 93.9 0.009 3.1E-07 53.1 -0.3 38 831-886 20-57 (100)
192 2ecy_A TNF receptor-associated 93.9 0.011 3.8E-07 47.9 0.2 35 831-884 13-47 (66)
193 3g4e_A Regucalcin; six bladed 93.8 3 0.0001 43.9 19.4 161 22-199 54-227 (297)
194 2csy_A Zinc finger protein 183 93.6 0.021 7.3E-07 48.3 1.4 33 833-884 15-47 (81)
195 3fl2_A E3 ubiquitin-protein li 93.5 0.014 4.7E-07 54.1 0.0 34 832-884 51-84 (124)
196 1ri6_A Putative isomerase YBHE 93.4 3 0.0001 44.0 18.7 158 23-198 85-259 (343)
197 3v9f_A Two-component system se 93.4 0.73 2.5E-05 56.3 15.3 154 21-199 362-522 (781)
198 2ecv_A Tripartite motif-contai 93.4 0.014 4.8E-07 49.8 -0.1 37 830-885 16-52 (85)
199 2dg1_A DRP35, lactonase; beta 93.2 4 0.00014 43.2 19.5 149 23-198 46-210 (333)
200 2z3z_A Dipeptidyl aminopeptida 93.2 0.75 2.6E-05 55.1 14.8 98 23-135 83-199 (706)
201 2ecn_A Ring finger protein 141 93.2 0.024 8.4E-07 46.4 1.1 35 830-884 12-46 (70)
202 3vtx_A MAMA; tetratricopeptide 93.1 0.8 2.7E-05 44.0 12.4 49 370-418 14-66 (184)
203 1fch_A Peroxisomal targeting s 93.0 1 3.6E-05 48.4 14.3 45 374-418 38-91 (368)
204 2z2n_A Virginiamycin B lyase; 92.9 4.8 0.00017 41.4 19.1 150 22-199 15-169 (299)
205 4eqf_A PEX5-related protein; a 92.8 1.6 5.5E-05 47.1 15.6 49 370-418 74-126 (365)
206 3ztg_A E3 ubiquitin-protein li 92.7 0.034 1.1E-06 48.3 1.4 36 830-884 10-46 (92)
207 2ckl_B Ubiquitin ligase protei 92.6 0.029 9.9E-07 54.7 1.0 35 833-885 54-88 (165)
208 2egp_A Tripartite motif-contai 92.6 0.018 6.1E-07 48.4 -0.5 37 830-885 9-45 (79)
209 2qc5_A Streptogramin B lactona 92.6 10 0.00035 38.9 30.4 150 22-199 20-174 (300)
210 3ott_A Two-component system se 92.4 0.52 1.8E-05 57.4 12.1 110 21-143 145-256 (758)
211 3hxj_A Pyrrolo-quinoline quino 92.4 0.25 8.4E-06 52.8 8.1 108 22-146 215-323 (330)
212 2ghs_A AGR_C_1268P; regucalcin 92.4 10 0.00035 40.4 21.3 160 22-199 90-258 (326)
213 2gw1_A Mitochondrial precursor 92.3 2.8 9.7E-05 47.2 17.6 50 369-418 47-100 (514)
214 3as5_A MAMA; tetratricopeptide 92.2 1.6 5.5E-05 41.0 13.1 49 370-418 17-69 (186)
215 1q7f_A NHL, brain tumor CG1071 92.2 5.9 0.0002 40.9 18.6 151 23-199 78-236 (286)
216 3dr2_A Exported gluconolactona 92.2 13 0.00044 39.0 22.5 56 33-97 59-114 (305)
217 1ri6_A Putative isomerase YBHE 92.0 6.8 0.00023 41.1 19.2 154 23-197 130-304 (343)
218 4ap4_A E3 ubiquitin ligase RNF 92.0 0.047 1.6E-06 50.8 1.5 43 832-886 6-48 (133)
219 1pjx_A Dfpase, DIISOPROPYLFLUO 92.0 9.5 0.00033 39.6 20.1 164 22-199 71-254 (314)
220 2ghs_A AGR_C_1268P; regucalcin 91.9 2.9 9.9E-05 44.8 16.0 141 25-198 52-207 (326)
221 1e4u_A Transcriptional repress 91.7 0.026 9E-07 47.5 -0.5 36 831-883 9-46 (78)
222 2ho1_A Type 4 fimbrial biogene 91.6 1.2 4.1E-05 45.0 11.9 49 370-418 46-98 (252)
223 3l11_A E3 ubiquitin-protein li 91.5 0.042 1.4E-06 50.0 0.6 33 832-883 14-46 (115)
224 1fch_A Peroxisomal targeting s 91.4 4.1 0.00014 43.5 16.8 50 369-418 72-125 (368)
225 3hct_A TNF receptor-associated 91.4 0.054 1.9E-06 49.5 1.2 38 830-886 15-52 (118)
226 1jm7_A BRCA1, breast cancer ty 91.4 0.032 1.1E-06 50.4 -0.4 34 833-885 21-54 (112)
227 2z2n_A Virginiamycin B lyase; 91.2 9.2 0.00031 39.2 18.8 149 22-198 57-210 (299)
228 4a0k_B E3 ubiquitin-protein li 91.2 0.042 1.4E-06 50.0 0.2 53 832-885 47-99 (117)
229 3uq3_A Heat shock protein STI1 91.0 5.2 0.00018 39.9 16.2 49 370-418 14-65 (258)
230 2ecf_A Dipeptidyl peptidase IV 90.8 2.4 8.2E-05 50.9 15.5 114 22-147 37-181 (741)
231 3u4y_A Uncharacterized protein 90.6 18 0.00062 37.8 20.7 152 23-198 42-204 (331)
232 1rwi_B Serine/threonine-protei 90.6 4.5 0.00015 41.2 15.4 150 23-199 68-220 (270)
233 1jmx_B Amine dehydrogenase; ox 90.5 1.4 4.7E-05 46.9 11.7 144 30-198 10-172 (349)
234 2qc5_A Streptogramin B lactona 90.5 12 0.00042 38.3 19.0 148 22-198 62-215 (300)
235 3u4t_A TPR repeat-containing p 90.5 9.2 0.00032 38.6 17.7 57 539-595 113-174 (272)
236 2q7f_A YRRB protein; TPR, prot 90.5 1 3.5E-05 45.0 10.0 48 371-418 33-84 (243)
237 1z6u_A NP95-like ring finger p 90.3 0.056 1.9E-06 51.8 0.2 33 833-884 78-110 (150)
238 1bor_A Transcription factor PM 90.1 0.024 8.2E-07 44.3 -2.1 30 833-881 6-35 (56)
239 2f42_A STIP1 homology and U-bo 90.1 0.41 1.4E-05 46.9 6.2 40 827-885 100-139 (179)
240 3scy_A Hypothetical bacterial 90.1 22 0.00074 37.9 21.2 118 22-147 100-242 (361)
241 3ro2_A PINS homolog, G-protein 90.1 5.2 0.00018 41.5 15.7 50 369-418 51-110 (338)
242 3e5z_A Putative gluconolactona 90.0 3.6 0.00012 43.0 14.3 128 40-199 152-284 (296)
243 3ott_A Two-component system se 90.0 3.1 0.0001 50.5 15.5 111 22-145 103-218 (758)
244 2j04_B YDR362CP, TAU91; beta p 89.7 3.6 0.00012 47.7 15.0 139 39-199 181-340 (524)
245 2pl2_A Hypothetical conserved 89.7 1.9 6.4E-05 43.2 11.1 49 370-418 14-66 (217)
246 3mkq_B Coatomer subunit alpha; 89.6 4.4 0.00015 39.4 13.1 62 364-429 8-69 (177)
247 3cv0_A Peroxisome targeting si 89.6 3.8 0.00013 42.7 14.2 203 368-588 28-265 (327)
248 4ap4_A E3 ubiquitin ligase RNF 89.6 0.14 4.6E-06 47.5 2.3 22 864-885 91-112 (133)
249 1q7f_A NHL, brain tumor CG1071 89.6 20 0.00069 36.7 19.7 150 23-198 122-277 (286)
250 4eqf_A PEX5-related protein; a 89.5 3.5 0.00012 44.3 14.1 50 369-418 107-160 (365)
251 3hfq_A Uncharacterized protein 89.4 17 0.00058 38.5 19.4 154 23-197 142-313 (347)
252 2d8s_A Cellular modulator of i 89.2 0.09 3.1E-06 44.4 0.6 38 832-886 14-56 (80)
253 2yhc_A BAMD, UPF0169 lipoprote 89.0 15 0.0005 36.5 17.5 49 370-418 13-68 (225)
254 3gw4_A Uncharacterized protein 89.0 3.8 0.00013 39.5 12.6 48 371-418 2-53 (203)
255 1k32_A Tricorn protease; prote 89.0 4.6 0.00016 50.9 16.5 148 23-198 297-458 (1045)
256 1rmd_A RAG1; V(D)J recombinati 88.9 0.086 2.9E-06 48.0 0.3 34 833-885 23-56 (116)
257 3mkr_A Coatomer subunit epsilo 88.9 6.3 0.00022 41.4 15.2 51 367-417 40-91 (291)
258 3cv0_A Peroxisome targeting si 88.7 11 0.00036 39.2 16.9 240 391-655 21-308 (327)
259 3uc1_A DNA gyrase subunit A; D 88.7 24 0.00083 37.9 19.7 159 22-199 95-277 (327)
260 3nf1_A KLC 1, kinesin light ch 88.6 4.4 0.00015 41.8 13.7 50 369-418 35-96 (311)
261 4gq1_A NUP37; propeller, trans 88.4 3.3 0.00011 45.6 13.1 112 27-147 97-218 (393)
262 3vtx_A MAMA; tetratricopeptide 88.4 5.4 0.00018 37.9 13.2 28 391-418 5-32 (184)
263 3knv_A TNF receptor-associated 88.1 0.16 5.5E-06 47.9 1.6 36 830-884 28-63 (141)
264 1xnf_A Lipoprotein NLPI; TPR, 88.0 12 0.00041 37.7 16.3 49 370-418 52-104 (275)
265 2vq2_A PILW, putative fimbrial 88.0 8.2 0.00028 37.4 14.6 79 370-448 17-105 (225)
266 3kci_A Probable E3 ubiquitin-p 88.0 25 0.00086 38.6 19.9 157 23-198 54-238 (389)
267 4a1s_A PINS, partner of inscut 87.9 6.4 0.00022 42.9 15.0 42 377-418 199-250 (411)
268 3ulq_A Response regulator aspa 87.5 5.5 0.00019 43.3 14.1 49 370-418 152-211 (383)
269 3uq3_A Heat shock protein STI1 87.5 3.7 0.00013 41.0 11.9 49 370-418 47-106 (258)
270 1rwi_B Serine/threonine-protei 87.5 9.4 0.00032 38.7 15.1 106 23-143 25-134 (270)
271 4gq1_A NUP37; propeller, trans 87.0 13 0.00046 40.5 17.0 164 20-199 185-389 (393)
272 3u4y_A Uncharacterized protein 86.9 12 0.00041 39.2 16.1 121 31-174 9-136 (331)
273 3scy_A Hypothetical bacterial 86.8 8.9 0.00031 41.1 15.2 117 23-148 212-338 (361)
274 2ct0_A Non-SMC element 1 homol 86.8 0.18 6.2E-06 41.8 1.0 37 832-886 14-50 (74)
275 1jm7_B BARD1, BRCA1-associated 86.8 0.053 1.8E-06 49.5 -2.5 35 832-884 21-55 (117)
276 1pby_B Quinohemoprotein amine 86.8 13 0.00046 38.6 16.3 64 23-97 83-161 (337)
277 3l6v_A GYRA, DNA gyrase subuni 86.8 24 0.00082 38.6 18.4 155 29-199 5-178 (370)
278 1xip_A Nucleoporin NUP159; bet 86.6 9.2 0.00032 42.3 15.1 135 23-198 39-188 (388)
279 3qky_A Outer membrane assembly 86.4 6.3 0.00021 40.1 13.0 49 370-418 24-79 (261)
280 1wim_A KIAA0161 protein; ring 85.9 0.29 1E-05 42.5 1.9 35 833-884 5-40 (94)
281 1wp5_A Topoisomerase IV; broke 85.8 19 0.00065 38.6 16.7 154 30-199 4-172 (323)
282 3ulq_A Response regulator aspa 85.5 43 0.0015 36.0 20.9 48 371-418 113-170 (383)
283 2ecf_A Dipeptidyl peptidase IV 85.3 6.7 0.00023 46.9 14.4 99 23-137 110-229 (741)
284 1suu_A DNA gyrase subunit A; t 85.2 34 0.0012 36.4 18.3 156 29-199 6-179 (312)
285 3q7m_A Lipoprotein YFGL, BAMB; 85.2 9.4 0.00032 41.3 14.4 103 25-147 233-337 (376)
286 3kci_A Probable E3 ubiquitin-p 85.2 31 0.001 37.8 18.7 155 23-198 160-342 (389)
287 3dsm_A Uncharacterized protein 85.1 8.6 0.0003 41.0 13.8 106 24-146 133-252 (328)
288 2dg1_A DRP35, lactonase; beta 84.9 40 0.0014 35.2 21.2 160 22-199 87-261 (333)
289 4gyw_A UDP-N-acetylglucosamine 84.8 2.8 9.7E-05 50.6 10.5 49 370-418 18-70 (723)
290 3sf4_A G-protein-signaling mod 84.6 8.4 0.00029 41.5 13.6 42 377-418 163-214 (406)
291 3fp2_A TPR repeat-containing p 84.3 2 7E-05 48.8 8.7 197 369-588 251-487 (537)
292 3hrp_A Uncharacterized protein 84.0 27 0.00092 38.6 17.6 110 23-147 132-249 (409)
293 3q15_A PSP28, response regulat 84.0 10 0.00034 41.2 13.9 49 370-418 150-209 (378)
294 2y1n_A E3 ubiquitin-protein li 82.9 0.46 1.6E-05 52.3 2.3 33 833-884 332-364 (389)
295 3ei3_A DNA damage-binding prot 82.7 61 0.0021 41.2 21.9 198 22-255 514-723 (1158)
296 3dr2_A Exported gluconolactona 82.6 9.3 0.00032 40.1 12.6 146 24-198 133-303 (305)
297 3q15_A PSP28, response regulat 82.0 10 0.00035 41.1 12.9 48 371-418 111-168 (378)
298 2pl2_A Hypothetical conserved 81.9 33 0.0011 33.7 15.8 156 392-559 6-176 (217)
299 3pbp_A Nucleoporin NUP82; beta 81.9 58 0.002 36.3 18.5 130 4-147 9-158 (452)
300 4ic3_A E3 ubiquitin-protein li 81.4 0.31 1.1E-05 40.3 0.1 31 833-882 24-55 (74)
301 2ho1_A Type 4 fimbrial biogene 81.4 14 0.0005 36.7 13.0 33 386-418 32-64 (252)
302 3pe7_A Oligogalacturonate lyas 81.0 28 0.00097 37.2 16.1 81 31-118 47-130 (388)
303 4gco_A Protein STI-1; structur 80.9 2.6 8.7E-05 38.2 6.3 50 369-418 21-74 (126)
304 3no2_A Uncharacterized protein 80.8 20 0.00069 37.2 14.2 98 31-144 5-105 (276)
305 4d9s_A UVB-resistance protein 80.7 71 0.0024 35.1 19.4 157 20-198 14-198 (406)
306 4abn_A Tetratricopeptide repea 80.3 12 0.00042 42.3 13.2 49 370-418 111-164 (474)
307 1xfd_A DIP, dipeptidyl aminope 80.3 17 0.00058 43.1 15.1 78 24-107 63-151 (723)
308 4ga2_A E3 SUMO-protein ligase 80.1 1.6 5.5E-05 40.8 4.8 48 371-418 7-58 (150)
309 4i17_A Hypothetical protein; T 80.1 16 0.00056 35.9 12.7 49 370-418 16-69 (228)
310 3edt_B KLC 2, kinesin light ch 79.7 29 0.00099 34.6 14.8 50 369-418 51-112 (283)
311 1zvt_A Topoisomerase IV subuni 79.4 35 0.0012 35.1 15.2 150 31-199 2-161 (256)
312 3qqz_A Putative uncharacterize 79.4 59 0.002 33.4 16.9 154 26-199 74-251 (255)
313 3hfq_A Uncharacterized protein 79.3 65 0.0022 33.7 20.9 117 22-147 86-218 (347)
314 3u4t_A TPR repeat-containing p 79.2 10 0.00036 38.2 11.2 49 370-418 46-101 (272)
315 3no0_A DNA gyrase subunit A; D 78.8 66 0.0022 33.5 21.9 156 21-198 67-243 (276)
316 2gop_A Trilobed protease; beta 78.7 43 0.0015 35.1 16.3 96 23-135 16-122 (347)
317 3ro3_A PINS homolog, G-protein 78.6 32 0.0011 30.6 13.5 49 370-418 18-76 (164)
318 2kr4_A Ubiquitin conjugation f 77.9 0.7 2.4E-05 39.3 1.2 37 830-885 11-47 (85)
319 3q7m_A Lipoprotein YFGL, BAMB; 77.6 12 0.00041 40.4 11.6 105 23-143 269-374 (376)
320 3hcs_A TNF receptor-associated 77.5 0.69 2.4E-05 45.0 1.2 37 830-885 15-51 (170)
321 1zi0_A DNA gyrase subunit A; b 77.5 76 0.0026 33.5 17.9 153 31-199 3-174 (307)
322 3dsm_A Uncharacterized protein 76.7 60 0.0021 34.2 16.8 152 23-199 85-251 (328)
323 2vq2_A PILW, putative fimbrial 76.3 55 0.0019 31.2 19.9 30 389-418 6-35 (225)
324 1k32_A Tricorn protease; prote 75.9 21 0.00072 44.8 14.7 110 23-146 339-460 (1045)
325 2yu4_A E3 SUMO-protein ligase 75.9 0.96 3.3E-05 39.2 1.6 35 832-885 6-41 (94)
326 2kre_A Ubiquitin conjugation f 75.9 0.77 2.6E-05 40.4 0.9 36 830-884 26-61 (100)
327 1l8d_A DNA double-strand break 75.8 5 0.00017 35.8 6.5 48 792-845 12-59 (112)
328 2h6f_A Protein farnesyltransfe 74.9 33 0.0011 37.6 14.3 121 517-645 106-246 (382)
329 2xev_A YBGF; tetratricopeptide 74.7 14 0.00048 32.3 9.4 49 370-418 11-66 (129)
330 4ga2_A E3 SUMO-protein ligase 74.6 4.8 0.00016 37.5 6.4 50 369-418 39-92 (150)
331 3ffl_A Anaphase-promoting comp 74.4 4.6 0.00016 38.8 6.0 54 365-418 24-90 (167)
332 3qky_A Outer membrane assembly 74.2 67 0.0023 32.1 15.7 151 391-559 15-173 (261)
333 1wgm_A Ubiquitin conjugation f 74.1 0.91 3.1E-05 39.8 1.0 37 830-885 19-56 (98)
334 1jmx_B Amine dehydrogenase; ox 74.0 54 0.0019 34.0 15.5 65 24-100 94-176 (349)
335 3tc9_A Hypothetical hydrolase; 73.9 91 0.0031 34.5 17.9 151 24-198 139-298 (430)
336 3ma5_A Tetratricopeptide repea 73.7 5.6 0.00019 34.0 6.1 49 370-418 16-68 (100)
337 2z3z_A Dipeptidyl aminopeptida 73.7 45 0.0015 39.3 16.3 139 39-198 233-388 (706)
338 4b4t_Q 26S proteasome regulato 73.5 14 0.00049 40.4 11.0 50 369-418 12-82 (434)
339 2kc7_A BFR218_protein; tetratr 72.6 4 0.00014 34.4 4.8 49 370-418 9-62 (99)
340 3uc1_A DNA gyrase subunit A; D 72.0 51 0.0017 35.3 14.5 153 31-199 3-174 (327)
341 3upv_A Heat shock protein STI1 72.0 5.5 0.00019 35.2 5.9 49 370-418 13-65 (126)
342 4a5s_A Dipeptidyl peptidase 4 72.0 32 0.0011 41.2 14.4 130 7-147 4-141 (740)
343 1xfd_A DIP, dipeptidyl aminope 71.9 16 0.00054 43.4 11.6 114 24-147 19-143 (723)
344 1qqe_A Vesicular transport pro 71.9 64 0.0022 33.2 15.2 49 370-418 46-104 (292)
345 1ouv_A Conserved hypothetical 71.8 59 0.002 32.7 14.7 49 370-418 15-69 (273)
346 3fvz_A Peptidyl-glycine alpha- 71.6 1E+02 0.0035 32.2 18.9 111 22-144 24-172 (329)
347 2fp8_A Strictosidine synthase; 71.4 87 0.003 32.7 16.3 61 25-85 22-99 (322)
348 3vk6_A E3 ubiquitin-protein li 70.8 1.8 6E-05 37.6 1.9 31 835-883 3-33 (101)
349 1elw_A TPR1-domain of HOP; HOP 70.6 7 0.00024 33.2 6.1 49 370-418 13-65 (118)
350 2kck_A TPR repeat; tetratricop 70.5 6.2 0.00021 33.2 5.7 49 370-418 15-67 (112)
351 2q7f_A YRRB protein; TPR, prot 70.5 25 0.00086 34.4 11.1 49 370-418 66-118 (243)
352 3gyz_A Chaperone protein IPGC; 70.3 6.9 0.00024 36.8 6.3 49 370-418 45-97 (151)
353 2ecg_A Baculoviral IAP repeat- 70.1 0.75 2.6E-05 38.0 -0.5 29 833-880 25-54 (75)
354 2dba_A Smooth muscle cell asso 69.9 11 0.00038 33.7 7.6 49 370-418 37-92 (148)
355 2bkl_A Prolyl endopeptidase; m 69.7 72 0.0025 37.7 16.8 161 22-197 70-257 (695)
356 4d9s_A UVB-resistance protein 69.5 1.3E+02 0.0046 32.8 20.2 155 22-198 68-250 (406)
357 2xcb_A PCRH, regulatory protei 69.5 6.4 0.00022 35.9 5.8 49 370-418 27-79 (142)
358 1na3_A Designed protein CTPR2; 68.9 4.2 0.00014 33.3 4.0 49 370-418 18-70 (91)
359 2ifu_A Gamma-SNAP; membrane fu 68.2 35 0.0012 35.6 12.2 50 369-418 44-103 (307)
360 2xdw_A Prolyl endopeptidase; a 68.0 1.9E+02 0.0066 34.0 28.7 161 23-198 75-265 (710)
361 3sz7_A HSC70 cochaperone (SGT) 67.8 8 0.00027 36.1 6.3 50 369-418 19-72 (164)
362 3edt_B KLC 2, kinesin light ch 67.4 45 0.0015 33.1 12.5 44 375-418 22-70 (283)
363 2lni_A Stress-induced-phosphop 67.4 7.8 0.00027 33.9 5.8 49 370-418 25-77 (133)
364 2vgx_A Chaperone SYCD; alterna 67.4 8.3 0.00028 35.8 6.2 49 370-418 30-82 (148)
365 2vyi_A SGTA protein; chaperone 67.0 9.5 0.00033 33.0 6.3 50 369-418 20-73 (131)
366 3azo_A Aminopeptidase; POP fam 66.6 1.5E+02 0.005 34.4 18.5 152 31-198 90-271 (662)
367 2bkl_A Prolyl endopeptidase; m 66.6 67 0.0023 38.0 15.5 137 25-174 171-328 (695)
368 3u3w_A Transcriptional activat 66.5 1.2E+02 0.0041 31.0 16.2 21 539-559 201-221 (293)
369 4gcn_A Protein STI-1; structur 66.2 7 0.00024 35.1 5.2 25 393-417 85-109 (127)
370 2l6j_A TPR repeat-containing p 66.1 5.1 0.00017 34.1 4.1 49 370-418 13-65 (111)
371 1na0_A Designed protein CTPR3; 66.1 10 0.00036 32.4 6.3 49 370-418 18-70 (125)
372 3qqz_A Putative uncharacterize 65.2 46 0.0016 34.3 11.8 108 17-137 22-141 (255)
373 4g1t_A Interferon-induced prot 64.9 1.6E+02 0.0055 32.0 22.0 49 370-418 60-121 (472)
374 2vje_B MDM4 protein; proto-onc 64.9 1.3 4.4E-05 35.2 -0.1 35 832-883 6-41 (63)
375 3o4h_A Acylamino-acid-releasin 64.5 39 0.0013 38.9 12.6 109 25-147 115-227 (582)
376 3b7f_A Glycosyl hydrolase, BNR 64.3 58 0.002 35.4 13.4 102 31-143 22-143 (394)
377 2fp8_A Strictosidine synthase; 64.2 1.3E+02 0.0046 31.1 15.9 138 23-174 81-237 (322)
378 2vje_A E3 ubiquitin-protein li 63.9 2.2 7.6E-05 33.9 1.1 34 832-884 7-43 (64)
379 3k9i_A BH0479 protein; putativ 63.8 4.9 0.00017 35.3 3.6 30 389-418 25-54 (117)
380 2vsy_A XCC0866; transferase, g 63.7 31 0.0011 39.7 11.5 44 375-418 3-50 (568)
381 3qil_A Clathrin heavy chain 1; 63.7 1.1 3.8E-05 40.3 -0.8 103 692-805 14-117 (125)
382 3b7f_A Glycosyl hydrolase, BNR 63.6 77 0.0026 34.4 14.3 114 22-143 55-204 (394)
383 1nir_A Nitrite reductase; hemo 63.2 2.1E+02 0.0071 32.6 19.1 153 24-199 181-353 (543)
384 4gcn_A Protein STI-1; structur 63.2 5.8 0.0002 35.7 4.0 46 371-417 18-68 (127)
385 3o4h_A Acylamino-acid-releasin 63.1 59 0.002 37.3 13.8 138 28-198 158-312 (582)
386 4gz8_A Semaphorin-3A; multi-do 62.9 7 0.00024 46.3 5.6 60 23-85 413-489 (667)
387 3htk_C E3 SUMO-protein ligase 62.9 2.1 7.2E-05 44.3 1.0 35 833-885 181-215 (267)
388 3u3w_A Transcriptional activat 62.6 53 0.0018 33.8 12.2 51 368-418 82-142 (293)
389 1tl2_A L10, protein (tachylect 62.5 18 0.00061 36.6 7.7 101 22-144 41-152 (236)
390 2qfc_A PLCR protein; TPR, HTH, 62.2 1.3E+02 0.0044 30.7 15.1 50 369-418 83-142 (293)
391 3n71_A Histone lysine methyltr 62.1 72 0.0025 36.2 13.9 48 371-418 319-378 (490)
392 1yr2_A Prolyl oligopeptidase; 61.9 2E+02 0.0068 34.1 18.7 136 25-174 212-372 (741)
393 2r5s_A Uncharacterized protein 61.4 83 0.0028 29.3 12.4 49 370-418 15-67 (176)
394 1hxi_A PEX5, peroxisome target 61.2 7.6 0.00026 34.6 4.4 49 370-418 26-78 (121)
395 4gco_A Protein STI-1; structur 61.1 6.9 0.00024 35.2 4.2 50 369-418 55-108 (126)
396 4abn_A Tetratricopeptide repea 60.4 59 0.002 36.5 12.9 74 375-448 82-165 (474)
397 1elr_A TPR2A-domain of HOP; HO 60.3 8.8 0.0003 33.3 4.7 15 403-417 50-64 (131)
398 3q49_B STIP1 homology and U bo 60.2 9.9 0.00034 33.7 5.1 50 369-418 17-70 (137)
399 1q47_A Semaphorin 3A; beta pro 58.9 16 0.00055 41.7 7.6 60 23-85 405-481 (495)
400 3kya_A Putative phosphatase; s 58.9 2.4E+02 0.0082 31.9 18.4 159 24-197 141-337 (496)
401 3mvd_K Regulator of chromosome 58.5 2.1E+02 0.0072 31.2 20.3 155 22-198 127-319 (423)
402 2yho_A E3 ubiquitin-protein li 58.4 1 3.5E-05 37.7 -1.9 31 833-882 18-49 (79)
403 3azo_A Aminopeptidase; POP fam 58.2 1.3E+02 0.0045 34.8 15.9 149 21-189 23-206 (662)
404 3upv_A Heat shock protein STI1 58.1 7.9 0.00027 34.1 4.0 50 369-418 46-99 (126)
405 1zfo_A LAsp-1; LIM domain, zin 58.1 0.8 2.7E-05 30.9 -2.1 29 833-879 3-31 (31)
406 3iuj_A Prolyl endopeptidase; h 58.0 2.8E+02 0.0097 32.5 19.0 109 30-147 184-314 (693)
407 3sjl_D Methylamine dehydrogena 57.9 1.1E+02 0.0037 33.6 13.9 157 26-199 82-254 (386)
408 2kat_A Uncharacterized protein 57.8 7.3 0.00025 33.8 3.6 25 393-417 21-45 (115)
409 1elr_A TPR2A-domain of HOP; HO 57.6 15 0.00053 31.6 5.9 24 394-417 7-30 (131)
410 1hz4_A MALT regulatory protein 57.5 1.9E+02 0.0065 30.3 16.8 50 369-418 61-120 (373)
411 2fo7_A Synthetic consensus TPR 57.2 27 0.00094 29.9 7.5 78 370-447 10-96 (136)
412 3ro3_A PINS homolog, G-protein 56.8 42 0.0014 29.8 9.1 29 388-416 6-34 (164)
413 1a17_A Serine/threonine protei 56.8 17 0.00059 33.1 6.3 49 370-418 22-74 (166)
414 1jof_A Carboxy-CIS,CIS-muconat 56.7 2E+02 0.0068 30.4 17.3 100 39-147 117-224 (365)
415 2xev_A YBGF; tetratricopeptide 56.2 13 0.00046 32.4 5.2 49 370-418 48-103 (129)
416 4gyw_A UDP-N-acetylglucosamine 56.1 26 0.00089 42.1 9.2 44 614-658 93-136 (723)
417 3rkv_A Putative peptidylprolyl 55.5 9.1 0.00031 35.6 4.1 49 370-418 72-124 (162)
418 2lni_A Stress-induced-phosphop 55.5 8.8 0.0003 33.6 3.8 50 369-418 58-111 (133)
419 3gyz_A Chaperone protein IPGC; 55.4 9.1 0.00031 35.9 4.1 50 369-418 78-131 (151)
420 2fo7_A Synthetic consensus TPR 55.0 19 0.00065 31.0 6.0 49 370-418 44-96 (136)
421 3urz_A Uncharacterized protein 54.6 19 0.00063 35.3 6.4 48 370-418 13-81 (208)
422 1elw_A TPR1-domain of HOP; HOP 54.5 10 0.00035 32.1 4.0 49 370-418 47-99 (118)
423 2fbn_A 70 kDa peptidylprolyl i 54.2 17 0.00059 35.0 6.0 49 370-418 47-115 (198)
424 3sz7_A HSC70 cochaperone (SGT) 54.0 10 0.00035 35.4 4.2 50 369-418 53-106 (164)
425 2qfc_A PLCR protein; TPR, HTH, 53.9 1.8E+02 0.0063 29.5 14.6 26 393-418 77-102 (293)
426 3as5_A MAMA; tetratricopeptide 53.6 24 0.00081 32.5 6.8 50 369-418 50-103 (186)
427 3mvd_K Regulator of chromosome 53.4 1.5E+02 0.0052 32.4 14.5 152 23-198 25-204 (423)
428 2pzi_A Probable serine/threoni 53.0 63 0.0022 38.3 11.9 47 372-418 402-460 (681)
429 3fvz_A Peptidyl-glycine alpha- 53.0 1.9E+02 0.0065 30.1 14.8 96 23-120 144-250 (329)
430 3mv2_B Coatomer subunit epsilo 52.9 85 0.0029 33.3 11.5 19 540-558 217-235 (310)
431 2pzi_A Probable serine/threoni 52.8 47 0.0016 39.4 10.7 49 370-418 442-494 (681)
432 1vyx_A ORF K3, K3RING; zinc-bi 52.7 3.8 0.00013 32.2 0.7 36 832-886 5-45 (60)
433 3nf1_A KLC 1, kinesin light ch 52.5 1.2E+02 0.0042 30.4 12.8 31 388-418 24-54 (311)
434 1qqe_A Vesicular transport pro 52.4 2E+02 0.007 29.2 16.4 59 537-595 161-231 (292)
435 2ea5_A Cell growth regulator w 52.4 2.4 8.2E-05 34.2 -0.6 31 832-881 14-45 (68)
436 2vyi_A SGTA protein; chaperone 52.4 11 0.00039 32.5 4.0 50 369-418 54-107 (131)
437 3oky_B Putative uncharacterize 52.4 11 0.00036 43.7 4.6 62 24-85 405-489 (565)
438 4b4t_Q 26S proteasome regulato 51.8 78 0.0027 34.2 11.8 24 395-418 8-31 (434)
439 3pe7_A Oligogalacturonate lyas 51.6 2.3E+02 0.008 29.6 16.6 86 22-110 188-284 (388)
440 2xcb_A PCRH, regulatory protei 50.9 12 0.00043 33.9 4.2 49 370-418 61-113 (142)
441 3rkv_A Putative peptidylprolyl 50.2 27 0.00091 32.3 6.5 49 370-418 20-90 (162)
442 3l6v_A GYRA, DNA gyrase subuni 49.8 2.8E+02 0.0096 30.0 20.7 166 22-198 99-313 (370)
443 2dba_A Smooth muscle cell asso 49.6 11 0.00037 33.8 3.5 49 370-418 74-126 (148)
444 2ond_A Cleavage stimulation fa 49.5 1.5E+02 0.0052 30.5 13.1 28 391-418 99-126 (308)
445 2vgx_A Chaperone SYCD; alterna 49.4 14 0.00047 34.2 4.2 49 370-418 64-116 (148)
446 3t6p_A Baculoviral IAP repeat- 49.0 2.8 9.7E-05 45.6 -0.8 31 832-881 294-325 (345)
447 2xzh_A Clathrin heavy chain 1; 49.0 2.8E+02 0.0096 29.8 28.2 298 29-385 34-354 (365)
448 1yr2_A Prolyl oligopeptidase; 48.9 2.4E+02 0.0082 33.4 16.3 161 22-198 109-300 (741)
449 2ifu_A Gamma-SNAP; membrane fu 48.6 68 0.0023 33.3 10.1 23 537-559 158-180 (307)
450 1wil_A KIAA1045 protein; ring 48.5 4.2 0.00014 33.9 0.3 33 830-882 12-47 (89)
451 1hh8_A P67PHOX, NCF-2, neutrop 48.5 23 0.00078 34.2 5.9 49 370-418 15-64 (213)
452 1nir_A Nitrite reductase; hemo 48.3 3.5E+02 0.012 30.7 29.7 100 31-143 149-253 (543)
453 1hh8_A P67PHOX, NCF-2, neutrop 48.1 44 0.0015 32.0 8.0 49 370-418 46-98 (213)
454 2kck_A TPR repeat; tetratricop 47.9 9.4 0.00032 32.1 2.6 50 369-418 48-104 (112)
455 3q49_B STIP1 homology and U bo 47.5 15 0.0005 32.6 4.0 49 370-418 52-104 (137)
456 3sre_A PON1, serum paraoxonase 47.5 2.6E+02 0.0088 30.1 14.6 56 30-85 59-134 (355)
457 3k9i_A BH0479 protein; putativ 47.4 41 0.0014 29.0 6.9 48 370-418 36-88 (117)
458 3qou_A Protein YBBN; thioredox 47.4 1E+02 0.0035 31.6 11.2 113 541-658 124-244 (287)
459 1npe_A Nidogen, entactin; glyc 47.2 2.3E+02 0.0078 28.2 21.7 113 23-147 37-155 (267)
460 3of7_A Regulator of chromosome 47.1 3.4E+02 0.012 30.2 20.0 110 23-146 205-340 (473)
461 3al9_A Plexin-A2; beta-propell 46.4 27 0.00092 40.3 6.8 60 23-85 401-470 (539)
462 1a12_A RCC1, regulator of chro 46.2 3.2E+02 0.011 29.6 18.2 71 22-97 111-190 (413)
463 1a17_A Serine/threonine protei 46.0 15 0.00053 33.5 4.0 49 370-418 56-108 (166)
464 1na0_A Designed protein CTPR3; 45.4 17 0.00058 30.9 4.0 49 370-418 52-104 (125)
465 2e2e_A Formate-dependent nitri 45.2 28 0.00095 32.5 5.8 48 371-418 20-71 (177)
466 2fbn_A 70 kDa peptidylprolyl i 45.1 14 0.00047 35.7 3.6 49 370-418 97-149 (198)
467 3no2_A Uncharacterized protein 45.0 2.6E+02 0.009 28.3 14.0 111 24-146 79-194 (276)
468 3nw0_A Non-structural maintena 44.9 6.5 0.00022 40.3 1.2 35 833-885 180-214 (238)
469 3m0c_C LDL receptor, low-densi 44.1 4.7E+02 0.016 31.4 17.7 61 22-85 424-490 (791)
470 3qww_A SET and MYND domain-con 44.1 17 0.00058 40.8 4.6 49 370-418 349-409 (433)
471 1p5q_A FKBP52, FK506-binding p 43.6 36 0.0012 36.3 7.1 79 370-448 156-258 (336)
472 3nvq_A Semaphorin-7A; beta-pro 43.2 47 0.0016 38.6 8.1 61 22-85 362-438 (590)
473 1wp5_A Topoisomerase IV; broke 43.2 3.2E+02 0.011 28.8 21.7 162 22-198 92-274 (323)
474 3c5m_A Oligogalacturonate lyas 43.1 3.1E+02 0.011 28.6 15.2 95 40-146 167-272 (396)
475 3urz_A Uncharacterized protein 42.9 15 0.00053 35.9 3.6 50 369-418 62-115 (208)
476 1ijq_A LDL receptor, low-densi 42.8 3.1E+02 0.01 28.5 20.8 153 23-198 78-235 (316)
477 2h6f_A Protein farnesyltransfe 42.5 94 0.0032 33.8 10.3 62 357-418 89-159 (382)
478 4g26_A Pentatricopeptide repea 42.1 2.9E+02 0.01 31.1 14.8 139 516-658 34-200 (501)
479 2w18_A PALB2, fancn, partner a 41.5 3.6E+02 0.012 29.0 17.1 51 32-84 194-245 (356)
480 2v5f_A Prolyl 4-hydroxylase su 40.9 29 0.00098 29.8 4.7 49 370-418 14-73 (104)
481 2bay_A PRE-mRNA splicing facto 40.8 6.7 0.00023 30.8 0.4 34 834-886 4-38 (61)
482 3ol2_B Plexin-B1; beta-propell 40.5 52 0.0018 37.7 7.9 59 23-85 388-455 (528)
483 1zvu_A Topoisomerase IV subuni 40.4 2.8E+02 0.0097 32.7 14.0 153 29-199 470-631 (716)
484 3iuj_A Prolyl endopeptidase; h 40.2 3.1E+02 0.011 32.1 15.3 89 24-119 236-336 (693)
485 2oiz_A Aromatic amine dehydrog 40.2 2.3E+02 0.0079 30.1 13.0 113 26-146 54-181 (361)
486 1zbd_B Rabphilin-3A; G protein 40.0 25 0.00086 32.4 4.2 74 785-880 15-88 (134)
487 1ihg_A Cyclophilin 40; ppiase 39.8 43 0.0015 36.3 7.0 49 370-418 232-300 (370)
488 3qwp_A SET and MYND domain-con 39.4 51 0.0017 36.7 7.6 49 370-418 338-398 (429)
489 1zi0_A DNA gyrase subunit A; b 39.1 3.6E+02 0.012 28.2 20.6 160 22-198 95-274 (307)
490 1z68_A Fibroblast activation p 38.7 45 0.0015 39.5 7.5 73 24-106 62-146 (719)
491 4g26_A Pentatricopeptide repea 38.1 94 0.0032 35.3 9.7 147 539-709 31-200 (501)
492 3mzk_B Protein transport prote 38.0 3.8E+02 0.013 29.8 14.2 44 694-743 160-204 (441)
493 2hr2_A Hypothetical protein; a 37.9 26 0.00088 33.4 4.1 49 370-418 66-129 (159)
494 2e2e_A Formate-dependent nitri 37.5 45 0.0016 31.0 6.0 50 369-418 52-108 (177)
495 2vsy_A XCC0866; transferase, g 37.5 47 0.0016 38.1 7.2 80 369-448 31-119 (568)
496 1suu_A DNA gyrase subunit A; t 37.2 3.8E+02 0.013 28.0 20.9 157 22-197 100-279 (312)
497 3k1l_B Fancl; UBC, ring, RWD, 37.0 4.5 0.00015 43.3 -1.5 46 832-888 307-352 (381)
498 2xm6_A Protein corresponding t 36.8 4.6E+02 0.016 28.8 17.7 13 547-559 272-284 (490)
499 4i17_A Hypothetical protein; T 36.8 27 0.00092 34.2 4.4 49 370-418 51-103 (228)
500 3f6q_B LIM and senescent cell 36.3 5.3 0.00018 32.0 -0.9 32 832-880 10-41 (72)
No 1
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.41 E-value=4.7e-11 Score=148.60 Aligned_cols=372 Identities=14% Similarity=0.104 Sum_probs=249.8
Q ss_pred hhHHHHHHchhhHHHHHHhcCC---h--h---------------------hHHHHHHHHHHHHHhcCCHHHHHHHHHHhc
Q 002318 365 RDMWKVYLDMKEYAAALANCRD---P--L---------------------QRDQVYLVQAEAAFATKDFHRAASFYAKIN 418 (936)
Q Consensus 365 ~~~W~~ll~~~~f~~Al~~~~~---~--~---------------------~~~~I~~~~~~~L~~~g~y~~Aa~~y~~~~ 418 (936)
..+..++.+.|+|++|.++-+. . + ....+..++|..+...|+|.+|+..|.+..
T Consensus 1053 ~eIA~Iai~lglyEEAf~IYkKa~~~~~A~~VLie~i~nldrAiE~Aervn~p~vWsqLAKAql~~G~~kEAIdsYiKAd 1132 (1630)
T 1xi4_A 1053 PDIANIAISNELFEEAFAIFRKFDVNTSAVQVLIEHIGNLDRAYEFAERCNEPAVWSQLAKAQLQKGMVKEAIDSYIKAD 1132 (1630)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHcCCHHHHHHHHHHHHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCHHHHHHHHHhcC
Confidence 4567788888999998887441 0 0 124788899999999999999999999987
Q ss_pred CCCChHHHHHHhcCcChHHHHHHHHHHHhhcccCchhHHHHHHHHHHHHHHHHHHhhhhcccchhhccchHHHHHHHHHH
Q 002318 419 YILSFEEITLKFISVSEQDALRTFLLRKLDNLAKDDKCQITMISTWATELYLDKINRLLLEDDTALENRSSEYQSIMREF 498 (936)
Q Consensus 419 ~~~~~E~v~lkFl~~~~~~~L~~YL~~~l~~l~~~~~~~~~lL~~Wl~ely~~~l~~~~~e~~~~~~~~~~~~~~~~~~l 498 (936)
+...|.+|+..+.+.++.+.+..||..-....+ + ..+-+|+...|-. ++++ +++
T Consensus 1133 D~say~eVa~~~~~lGkyEEAIeyL~mArk~~~-e-----~~Idt~LafaYAK-l~rl-------------------eel 1186 (1630)
T 1xi4_A 1133 DPSSYMEVVQAANTSGNWEELVKYLQMARKKAR-E-----SYVETELIFALAK-TNRL-------------------AEL 1186 (1630)
T ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcc-c-----ccccHHHHHHHHh-hcCH-------------------HHH
Confidence 667888999999999999999999986443221 1 1234456666642 2322 245
Q ss_pred HHHHhcccccCCHHHHHHHHHHcCChhHHHHHHHhhhhHHHHHHHHHhcccHHHHHHHHhCCCCchhhHHhhHHHHHhHC
Q 002318 499 RAFLSDCKDVLDEATTMKLLESYGRVEELVFFASLKEQHEIVVHHYIQQGEAKKALQMLRKPAVPIDLQYKFAPDLIMLD 578 (936)
Q Consensus 499 ~~fl~~~~~~ld~~tv~~ll~~~g~~e~~l~~a~~~~dy~~ll~~yi~~~~~~~AL~~L~~~~d~~~li~k~~~~Ll~~~ 578 (936)
..|+..... -+...+-+.+.+.|++++|+.+....++|..++..|++.|+|++|++...+-.+ .+.+.+.+...++..
T Consensus 1187 e~fI~~~n~-ad~~~iGd~le~eg~YeeA~~~Y~kA~ny~rLA~tLvkLge~q~AIEaarKA~n-~~aWkev~~acve~~ 1264 (1630)
T 1xi4_A 1187 EEFINGPNN-AHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANS-TRTWKEVCFACVDGK 1264 (1630)
T ss_pred HHHHhCCCH-HHHHHHHHHHHhcCCHHHHHHHHHhhhHHHHHHHHHHHhCCHHHHHHHHHHhCC-HHHHHHHHHHHhhhh
Confidence 666653321 122345667889999999999999999999999999999999999999988766 355554444443211
Q ss_pred h-HHHHHHHHccCCCCCCcchhHhhhcCCCCCCCCChHHHHHHHHHHHhhcCCCCHhHHHHHHHHhhcCCChHHHHHHHH
Q 002318 579 A-YETVESWMTTNNLNPRKLIPAMMRYSSEPHAKNETHEVIKYLEFCVHRLHNEDPGVHNLLLSLYAKQEDDSALLRFLQ 657 (936)
Q Consensus 579 p-~~ti~ll~~~~~ld~~~li~~L~~~~~~~~~~~~~~~~~~YLe~li~~~~~~~~~~hn~ll~Ly~~~~~~~~Ll~fL~ 657 (936)
- ..+....+. -..+|+.+ +.+..|.... ..-+++++++|.-+.-. ..-..+++.+-.||+++. ++++++.++
T Consensus 1265 Ef~LA~~cgl~-Iiv~~deL-eeli~yYe~~---G~feEAI~LlE~aL~Le-raH~gmftELaiLyaKy~-peklmEhlk 1337 (1630)
T 1xi4_A 1265 EFRLAQMCGLH-IVVHADEL-EELINYYQDR---GYFEELITMLEAALGLE-RAHMGMFTELAILYSKFK-PQKMREHLE 1337 (1630)
T ss_pred HHHHHHHHHHh-hhcCHHHH-HHHHHHHHHc---CCHHHHHHHHHHHhccC-hhHhHHHHHHHHHHHhCC-HHHHHHHHH
Confidence 1 111111111 11233332 2332222111 24567999999877543 233567778888999998 689999998
Q ss_pred HhhCCCCCCCCcccCChHHHHHHHHhcCcceeeehhhhccccHHHHHHHHHhc-----CHHHHHHHhhccCCCHHHHHHH
Q 002318 658 CKFGKGRENGPEFFYDPKYALRLCLKEKRMRACVHIYGMMSMHEEAVALALQV-----DPELAMAEADKVEDDEDLRKKL 732 (936)
Q Consensus 658 ~~~~~~~~~~~~~~yd~~~aLrlc~~~~~~~~~v~L~~~~g~~~eAl~l~l~~-----di~lA~~~a~~~~~d~~~~kkL 732 (936)
-.. ..-+..+++|.|.+...+.+.|+||.+-|.|+.|+..++++ +-+.-++.+.+.. +.+ |
T Consensus 1338 ~f~---------~rini~k~~r~~e~~~lW~elv~LY~~~~e~dnA~~tm~~h~~~a~~~~~Fk~~i~kv~-n~e----l 1403 (1630)
T 1xi4_A 1338 LFW---------SRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNHPTDAWKEGQFKDIITKVA-NVE----L 1403 (1630)
T ss_pred HHH---------HhcccchHhHHHHHHHHHHHHHHHHHhcccHHHHHHHHHhccHhhhhhHHHHHHhcccc-cHH----H
Confidence 873 35678899999999999999999999999999999888873 2334444554544 565 8
Q ss_pred HHHHHHHHhhcccCCChHhHHHHHHHHHhcCCccccccccCcCCCCcchhHHHHHHHHHH
Q 002318 733 WLMVAKHVIEQEKGTKRENIRKAIAFLKETDGLLKIEDILPFFPDFALIDDFKEAICSSL 792 (936)
Q Consensus 733 Wl~ll~~~i~~~~~~~~~~i~~~l~~L~~~~~~L~i~diL~~~p~~~~I~~~Kd~I~~~L 792 (936)
+-+.+.+.+.... ..+..++..| .|.+....+..++-..-.++-+|.++...-
T Consensus 1404 yykai~Fyl~~~P----~~lndLl~~l---~~rlD~~R~V~l~~~~~~l~lik~yl~~vq 1456 (1630)
T 1xi4_A 1404 YYRAIQFYLEFKP----LLLNDLLMVL---SPRLDHTRAVNYFSKVKQLPLVKPYLRSVQ 1456 (1630)
T ss_pred HHHHHHHHHhhCh----HHHHHHHHHh---hhcCChHHHHHHHHHcCChHHhHHHHHHHH
Confidence 8888888886532 3344444444 234444444444443444555666554443
No 2
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.19 E-value=2.6e-10 Score=128.68 Aligned_cols=366 Identities=13% Similarity=0.084 Sum_probs=169.9
Q ss_pred HHc-hhhHHHHHHhcCChhhHHHHHHHHHHHHHhcCCHHHHHHHHHHhcCCCChHHHHHHhcCcChHHHHHHHHHHHhhc
Q 002318 371 YLD-MKEYAAALANCRDPLQRDQVYLVQAEAAFATKDFHRAASFYAKINYILSFEEITLKFISVSEQDALRTFLLRKLDN 449 (936)
Q Consensus 371 ll~-~~~f~~Al~~~~~~~~~~~I~~~~~~~L~~~g~y~~Aa~~y~~~~~~~~~E~v~lkFl~~~~~~~L~~YL~~~l~~ 449 (936)
+++ .|..++|.++++.-.. +.+-..-|..++.+|++.+|.+.|.++.+...|..|+......++.+.+..|+..-.+.
T Consensus 12 ll~~~~~ld~A~~fae~~~~-~~vWs~La~A~l~~g~~~eAIdsfika~D~~~y~~V~~~ae~~g~~EeAi~yl~~ark~ 90 (449)
T 1b89_A 12 LIEHIGNLDRAYEFAERCNE-PAVWSQLAKAQLQKGMVKEAIDSYIKADDPSSYMEVVQAANTSGNWEELVKYLQMARKK 90 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHccCHHHHHHHHHhCCC-hHHHHHHHHHHHHcCCHHHHHHHHHcCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh
Confidence 444 4679999999875322 24888999999999999999999999876667888888888888888888898865443
Q ss_pred ccCchhHHHHHHHHHHHHHHHHHHhhhhcccchhhccchHHHHHHHHHHHHHHhcccccCCHHHHHHHHHHcCChhHHHH
Q 002318 450 LAKDDKCQITMISTWATELYLDKINRLLLEDDTALENRSSEYQSIMREFRAFLSDCKDVLDEATTMKLLESYGRVEELVF 529 (936)
Q Consensus 450 l~~~~~~~~~lL~~Wl~ely~~~l~~~~~e~~~~~~~~~~~~~~~~~~l~~fl~~~~~~ld~~tv~~ll~~~g~~e~~l~ 529 (936)
++. .. +.+=++.+|. +++++ .+..+|++.... -....+-+.+...|..+++..
T Consensus 91 ~~~-~~-----i~~~Li~~Y~-Klg~l-------------------~e~e~f~~~pn~-~a~~~IGd~~~~~g~yeeA~~ 143 (449)
T 1b89_A 91 ARE-SY-----VETELIFALA-KTNRL-------------------AELEEFINGPNN-AHIQQVGDRCYDEKMYDAAKL 143 (449)
T ss_dssp -------------------------CH-------------------HHHTTTTTCC-----------------CTTTHHH
T ss_pred Ccc-ch-----hHHHHHHHHH-HhCCH-------------------HHHHHHHcCCcH-HHHHHHHHHHHHcCCHHHHHH
Confidence 221 11 1222333443 22222 224455544211 123344556778899999999
Q ss_pred HHHhhhhHHHHHHHHHhcccHHHHHHHHhCCCCchhhHHhhHHHHHhH-ChHHHHHHHHccCCCCCCcchhHhhhcCCCC
Q 002318 530 FASLKEQHEIVVHHYIQQGEAKKALQMLRKPAVPIDLQYKFAPDLIML-DAYETVESWMTTNNLNPRKLIPAMMRYSSEP 608 (936)
Q Consensus 530 ~a~~~~dy~~ll~~yi~~~~~~~AL~~L~~~~d~~~li~k~~~~Ll~~-~p~~ti~ll~~~~~ld~~~li~~L~~~~~~~ 608 (936)
+......|..+++.+++.|+|.+|++...+..+ ...+..-....+.. .=+.+....+. -...|+.+.....-|.+.
T Consensus 144 ~Y~~a~n~~~LA~~L~~Lg~yq~AVea~~KA~~-~~~Wk~v~~aCv~~~ef~lA~~~~l~-L~~~ad~l~~lv~~Yek~- 220 (449)
T 1b89_A 144 LYNNVSNFGRLASTLVHLGEYQAAVDGARKANS-TRTWKEVCFACVDGKEFRLAQMCGLH-IVVHADELEELINYYQDR- 220 (449)
T ss_dssp HHHHTTCHHHHHHHHHTTTCHHHHHHHHHHHTC-HHHHHHHHHHHHHTTCHHHHHHTTTT-TTTCHHHHHHHHHHHHHT-
T ss_pred HHHHhhhHHHHHHHHHHhccHHHHHHHHHHcCC-chhHHHHHHHHHHcCcHHHHHHHHHH-HHhCHhhHHHHHHHHHHC-
Confidence 999999999999999999999999999988754 34443333333322 11222111111 123444433322222211
Q ss_pred CCCCChHHHHHHHHHHHhhcCCCCHhHHHHHHHHhhcCCChHHHHHHHHHhhCCCCCCCCcccCChHHHHHHHHhcCcce
Q 002318 609 HAKNETHEVIKYLEFCVHRLHNEDPGVHNLLLSLYAKQEDDSALLRFLQCKFGKGRENGPEFFYDPKYALRLCLKEKRMR 688 (936)
Q Consensus 609 ~~~~~~~~~~~YLe~li~~~~~~~~~~hn~ll~Ly~~~~~~~~Ll~fL~~~~~~~~~~~~~~~yd~~~aLrlc~~~~~~~ 688 (936)
...+.++.+|+.-+... ..-..+...|-.||+++. ++++++.|+-.. ..-++++++|.|.+...+.
T Consensus 221 ---G~~eEai~lLe~aL~le-~ah~~~ftel~il~~ky~-p~k~~ehl~~~~---------~~ini~k~~~~~~~~~~w~ 286 (449)
T 1b89_A 221 ---GYFEELITMLEAALGLE-RAHMGMFTELAILYSKFK-PQKMREHLELFW---------SRVNIPKVLRAAEQAHLWA 286 (449)
T ss_dssp ---TCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHTTC-HHHHHHHHHHHS---------TTSCHHHHHHHHHTTTCHH
T ss_pred ---CCHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHHhcC-HHHHHHHHHHHH---------HHhcCcHHHHHHHHHHHHH
Confidence 24567999999887554 233567777888999998 799999999872 4578999999999999999
Q ss_pred eeehhhhccccHHHHHHHHHhc-----CHHHHHHHhhccCCCHHHHHHHHHHHHHHHhhcccCCChHhHHHHHHHHHhcC
Q 002318 689 ACVHIYGMMSMHEEAVALALQV-----DPELAMAEADKVEDDEDLRKKLWLMVAKHVIEQEKGTKRENIRKAIAFLKETD 763 (936)
Q Consensus 689 ~~v~L~~~~g~~~eAl~l~l~~-----di~lA~~~a~~~~~d~~~~kkLWl~ll~~~i~~~~~~~~~~i~~~l~~L~~~~ 763 (936)
+.|+||..-+.|+.|+..++++ |-+.=++++.++. +.| |+-+.+.+.+.... ..+..++..| .
T Consensus 287 e~~~ly~~~~e~d~A~~tm~~h~~~a~~~~~f~~~~~kv~-n~e----lyYkai~fyl~~~p----~~l~~ll~~l---~ 354 (449)
T 1b89_A 287 ELVFLYDKYEEYDNAIITMMNHPTDAWKEGQFKDIITKVA-NVE----LYYRAIQFYLEFKP----LLLNDLLMVL---S 354 (449)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHSTTTTCCHHHHHHHHHHCS-STH----HHHHHHHHHHHHCG----GGHHHHHHHH---G
T ss_pred HHHHHHHhhchHHHHHHHHHhCChhhhhhHHHHHHHhchh-HHH----HHHHHHHHHHhcCH----HHHHHHHHHH---H
Confidence 9999999999999999999983 4667777777775 344 77788888775432 3455555554 2
Q ss_pred CccccccccCcCCCCcchhHHHHHHHHHHH
Q 002318 764 GLLKIEDILPFFPDFALIDDFKEAICSSLD 793 (936)
Q Consensus 764 ~~L~i~diL~~~p~~~~I~~~Kd~I~~~L~ 793 (936)
|.+....++.++...-.++-+|.++...-.
T Consensus 355 ~~ld~~r~v~~~~~~~~l~l~~~yl~~v~~ 384 (449)
T 1b89_A 355 PRLDHTRAVNYFSKVKQLPLVKPYLRSVQN 384 (449)
T ss_dssp GGCCHHHHHHHHHHTTCTTTTHHHHHHHHT
T ss_pred hccCcHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 344444454444444456666666644443
No 3
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.19 E-value=3.3e-07 Score=114.71 Aligned_cols=366 Identities=13% Similarity=0.104 Sum_probs=230.8
Q ss_pred CccccccC-CceEEEEE--CCEEEEEecCCCcEEEEEEecCCCCCcccceeEEEeecCCCeEEEEeCCcEEEEEcccchh
Q 002318 289 KPGSMAVS-EYHFLLLM--GNKVKVVNRISEQIIEELQFDQTSDSISRGIIGLCSDATAGVFYAYDQNSIFQVSVNDEGR 365 (936)
Q Consensus 289 ~p~si~lT-~fHillL~--~~~l~ivn~l~~~vv~~~~~~~~~~~~~~~~~gl~~D~~~~~~~i~S~~~i~~~~~~~e~~ 365 (936)
=|++|-++ .|-++.+. ..-|.+++.-++..+|...+. .+++---+.+..++-+..+..++-+.-..-+|+.
T Consensus 260 fpv~~~vs~k~g~iy~itk~G~~~~~d~~t~~~i~~~ris------~~~iF~~~~~~~~~g~~~vnr~G~vl~v~v~~~~ 333 (1630)
T 1xi4_A 260 FPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYMNRIS------GETIFVTAPHEATAGIIGVNRKGQVLSVCVEEEN 333 (1630)
T ss_pred cceEEEeccccCEEEEEecCceEEEEecccchhhhhcccc------CCceEEeccCCCCCceEEEcCCceEEEEEEccch
Confidence 47877665 33344333 466677777777777766652 1233333334455677778888877777778888
Q ss_pred hHHHHHHchhhHHHHHHhcCC--hhhHHHHHHHHHHHHHhcCCHHHHHHHHHHhc-CCCChHHHHHHhcC----cChHHH
Q 002318 366 DMWKVYLDMKEYAAALANCRD--PLQRDQVYLVQAEAAFATKDFHRAASFYAKIN-YILSFEEITLKFIS----VSEQDA 438 (936)
Q Consensus 366 ~~W~~ll~~~~f~~Al~~~~~--~~~~~~I~~~~~~~L~~~g~y~~Aa~~y~~~~-~~~~~E~v~lkFl~----~~~~~~ 438 (936)
.+=.+.-...+-+.|+.+|.. -..-+.+...+-+.||..|+|.+||++.+.+- +..--.+.+-+|.. .|+..+
T Consensus 334 iv~yi~~~l~~~~la~~~a~r~~lpGad~l~~~~F~~l~~~g~y~~AA~~aa~sp~giLRt~~ti~rfk~~~~~pgq~~p 413 (1630)
T 1xi4_A 334 IIPYITNVLQNPDLALRMAVRNNLAGAEELFARKFNALFAQGNYSEAAKVAANAPKGILRTPDTIRRFQSVPAQPGQTSP 413 (1630)
T ss_pred hhhhHhhccCCHHHHHHHHHhcCCCCchhHHHHHHHHHHHcCCHHHHHHHHHhCccccccCHHHHHHHHcCCCCCCCCCH
Confidence 888555567788999999864 34567888888999999999999999999873 22333456678876 457889
Q ss_pred HHHHHHHHhhcccCchhHHHHHHHHHHHHHHHHHHhhhhcccchhhccchHHHHHHHHHHHHHHhcccccCCHHHHHHHH
Q 002318 439 LRTFLLRKLDNLAKDDKCQITMISTWATELYLDKINRLLLEDDTALENRSSEYQSIMREFRAFLSDCKDVLDEATTMKLL 518 (936)
Q Consensus 439 L~~YL~~~l~~l~~~~~~~~~lL~~Wl~ely~~~l~~~~~e~~~~~~~~~~~~~~~~~~l~~fl~~~~~~ld~~tv~~ll 518 (936)
|..|....|+.-+-+... -+|+----+. +.-++-+++++++.+-.+.+ ..=+++
T Consensus 414 ll~YF~~ll~~g~Ln~~e--------SlEl~r~vl~-----------------q~r~~lle~Wl~e~KL~~SE-eLGDlv 467 (1630)
T 1xi4_A 414 LLQYFGILLDQGQLNKYE--------SLELCRPVLQ-----------------QGRKQLLEKWLKEDKLECSE-ELGDLV 467 (1630)
T ss_pred HHHHHHHHHhcCCCcHHH--------HHHHHHHHHH-----------------hchHHHHHHHHHhCCccccH-HHHHHH
Confidence 999999877653211100 0011000000 00012223333332221111 122444
Q ss_pred HHcCChhHHHHHHHhhhhHHHHHHHHHhcccHHHHHHHHhCCCCchhhHHhhHHHHHhHChHHHHHHHH---cc--CCCC
Q 002318 519 ESYGRVEELVFFASLKEQHEIVVHHYIQQGEAKKALQMLRKPAVPIDLQYKFAPDLIMLDAYETVESWM---TT--NNLN 593 (936)
Q Consensus 519 ~~~g~~e~~l~~a~~~~dy~~ll~~yi~~~~~~~AL~~L~~~~d~~~li~k~~~~Ll~~~p~~ti~ll~---~~--~~ld 593 (936)
+.+ +...++......+-+..++..+.+.|++++++.+..+.....+.+ .-...+++.+|+.++++-. +. +.+|
T Consensus 468 ~~~-d~~lAl~iY~~a~~~~Kvi~~l~~~gq~~ki~~Y~~~~~~~pDy~-~ll~~~~~~~P~~~~~fa~~L~~~~~p~~d 545 (1630)
T 1xi4_A 468 KSV-DPTLALSVYLRANVPNKVIQCFAETGQVQKIVLYAKKVGYTPDWI-FLLRNVMRISPDQGQQFAQMLVQDEEPLAD 545 (1630)
T ss_pred Hhc-ChHHHHHHHHhcCCcHHHHHHHHHhCCHHHHHHHHhccCCCccHH-HHHHHHhhcChHHHHHHHHHHhcCCCCccC
Confidence 444 344566666677778889999999999999999988764322322 2233455677997776543 22 3577
Q ss_pred CCcchhHhhhcCCCCCCCCChHHHHHHHHHHHhhcCCCCHhHHHHHHHHhhcCCChHHHHHHHHHhhCCCCCCCCcccCC
Q 002318 594 PRKLIPAMMRYSSEPHAKNETHEVIKYLEFCVHRLHNEDPGVHNLLLSLYAKQEDDSALLRFLQCKFGKGRENGPEFFYD 673 (936)
Q Consensus 594 ~~~li~~L~~~~~~~~~~~~~~~~~~YLe~li~~~~~~~~~~hn~ll~Ly~~~~~~~~Ll~fL~~~~~~~~~~~~~~~yd 673 (936)
+.+++..|++.. .-.++..||-.+++.+...+..+...++++-....+ +=.-..|... .-++||
T Consensus 546 ~~~ivd~f~~~~-------~iq~~t~fLld~lk~n~~e~~~LQTrlle~Nl~~~p-qvadail~~~--------~fthyd 609 (1630)
T 1xi4_A 546 ITQIVDVFMEYN-------LIQQCTAFLLDALKNNRPSEGPLQTRLLEMNLMHAP-QVADAILGNQ--------MFTHYD 609 (1630)
T ss_pred HHHHHHHHHhcC-------cHHHHHHHHHHHHhCCChhhhhHhHHHHHHhhccch-hHHHHHHhcC--------cccccc
Confidence 777788887643 345688888877777766677899999998887653 2122233322 126899
Q ss_pred hHHHHHHHHhcCcceeeehhhhccccHHHHHHHHHh-cCHHHHHH
Q 002318 674 PKYALRLCLKEKRMRACVHIYGMMSMHEEAVALALQ-VDPELAMA 717 (936)
Q Consensus 674 ~~~aLrlc~~~~~~~~~v~L~~~~g~~~eAl~l~l~-~di~lA~~ 717 (936)
-..+-.+|++ .|+++.|++.+-+ .||..++-
T Consensus 610 ~~~IA~LCE~-------------aGl~qrale~y~d~~dikR~~~ 641 (1630)
T 1xi4_A 610 RAHIAQLCEK-------------AGLLQRALEHFTDLYDIKRAVV 641 (1630)
T ss_pred HHHHHHHHHH-------------cCcHHHHHHhcCCHHHHHHHhh
Confidence 9999999975 4667777776655 56655544
No 4
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=98.61 E-value=0.00059 Score=83.96 Aligned_cols=92 Identities=5% Similarity=-0.111 Sum_probs=69.0
Q ss_pred CceeEEEEe----CCEEEEEecCCeEEEEeC-CCCCceeeEcCCCCCCccceeEEEeCCCCCeEEEEeecCCCccEEEEe
Q 002318 22 GVITCMSAG----NDVIVLGTSKGWLIRHDF-GAGDSYDIDLSAGRPGEQSIHKVFVDPGGSHCIATIVGSGGAETFYTH 96 (936)
Q Consensus 22 ~~i~~l~v~----~n~l~l~~~~g~l~ridl-~~~~~~~~~l~~~~~~~~~i~~i~lDp~G~hlli~~~~~~~g~~~Y~~ 96 (936)
..+++++.+ ++.++.|..+|.|..+|+ .+..+..+.-+ ...|..+-.+|.|..+++++. +|....++
T Consensus 185 ~~v~~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~-----~~~v~~~~~~~~~~~l~~~~~---dg~v~vwd 256 (814)
T 3mkq_A 185 RGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGH-----MSNVSFAVFHPTLPIIISGSE---DGTLKIWN 256 (814)
T ss_dssp TCCCEEEECCSTTCCEEEEECTTSEEEEEETTTTEEEEEEECC-----SSCEEEEEECSSSSEEEEEET---TSCEEEEE
T ss_pred CCEEEEEEEECCCCCEEEEEeCCCEEEEEECCCCcEEEEEcCC-----CCCEEEEEEcCCCCEEEEEeC---CCeEEEEE
Confidence 457888884 568999999999999999 55545555443 367999999999999888887 89988887
Q ss_pred cCCCCceeccCCCCceEEEEEecCC
Q 002318 97 AKWSKPRVLSKLKGLVVNAVAWNRQ 121 (936)
Q Consensus 97 ~~~~k~k~L~klkg~~I~sVaw~~~ 121 (936)
....+.....+..+..|.+++|.++
T Consensus 257 ~~~~~~~~~~~~~~~~v~~~~~~~~ 281 (814)
T 3mkq_A 257 SSTYKVEKTLNVGLERSWCIATHPT 281 (814)
T ss_dssp TTTCSEEEEECCSSSSEEEEEECTT
T ss_pred CCCCcEEEEeecCCCcEEEEEEccC
Confidence 7654433322234468999999953
No 5
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=98.32 E-value=1.7e-08 Score=111.99 Aligned_cols=358 Identities=18% Similarity=0.148 Sum_probs=231.8
Q ss_pred HHchhhHHHHHHhcCC---hhhHHHHHHHHHHHHHhcCCHHHHHHHHHHhc-CCCChHHHHHHhcCcChHHHHHHHHHHH
Q 002318 371 YLDMKEYAAALANCRD---PLQRDQVYLVQAEAAFATKDFHRAASFYAKIN-YILSFEEITLKFISVSEQDALRTFLLRK 446 (936)
Q Consensus 371 ll~~~~f~~Al~~~~~---~~~~~~I~~~~~~~L~~~g~y~~Aa~~y~~~~-~~~~~E~v~lkFl~~~~~~~L~~YL~~~ 446 (936)
|+.-|+|..|.+.|+. +..-.+|.. ..++.++|.-|..+=-... ..+..++++..+-+.|..+.|+..|+..
T Consensus 180 LV~L~~yq~AVdaArKAns~ktWKeV~~----ACvd~~EfrLAqicGLniIvhadeL~elv~~YE~~G~f~ELIsLlEag 255 (624)
T 3lvg_A 180 LVHLGEYQAAVDGARKANSTRTWKEVCF----ACVDGKEFRLAQMCGLHIVVHADELEELINYYQDRGYFEELITMLEAA 255 (624)
T ss_dssp SSSCSGGGSSTTTTTTCCSSCSHHHHTH----HHHHSCTTTTTTHHHHHHHCCSSCCSGGGSSSSTTCCCTTSTTTHHHH
T ss_pred HHHHHHHHHHHHHHHhcCChhHHHHHHH----HHhCchHHHHHHHhcchhcccHHHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 6667888888888774 333345544 5666888887755444443 3467788888888889999999999998
Q ss_pred hhcccCchhHHHHHHHHHHHHHHHHHHhhhhcccchhhccchHHHHHHHHHHHHHHhcccccCCHHHHHHHHHHcCChhH
Q 002318 447 LDNLAKDDKCQITMISTWATELYLDKINRLLLEDDTALENRSSEYQSIMREFRAFLSDCKDVLDEATTMKLLESYGRVEE 526 (936)
Q Consensus 447 l~~l~~~~~~~~~lL~~Wl~ely~~~l~~~~~e~~~~~~~~~~~~~~~~~~l~~fl~~~~~~ld~~tv~~ll~~~g~~e~ 526 (936)
+..-+.+-.++.. |.-||. + -+ -+++...|+-+-..++..-++..++...--.|
T Consensus 256 lglErAHmGmFTE-----LaILYs-K---Y~-----------------PeKlmEHlklf~sriNipKviracE~ahLW~E 309 (624)
T 3lvg_A 256 LGLERAHMGMFTE-----LAILYS-K---FK-----------------PQKMREHLELFWSRVNIPKVLRAAEQAHLWAE 309 (624)
T ss_dssp TTSTTCCHHHHHH-----HHHHHH-S---SC-----------------TTHHHHHHTTSSSSSCCTTTHHHHTTTTCHHH
T ss_pred hCCCchhHHHHHH-----HHHHHH-h---cC-----------------HHHHHHHHHHHHHhccHHHHHHHHHHHhhHHH
Confidence 8633333333221 122332 1 11 02344445544445565555566665554444
Q ss_pred HHHHHHhhhhHHHHHHHHHhcccHHHHHHHHhCCC-C---------------chhhHHhhHHHHHhHChHHHHHHHHcc-
Q 002318 527 LVFFASLKEQHEIVVHHYIQQGEAKKALQMLRKPA-V---------------PIDLQYKFAPDLIMLDAYETVESWMTT- 589 (936)
Q Consensus 527 ~l~~a~~~~dy~~ll~~yi~~~~~~~AL~~L~~~~-d---------------~~~li~k~~~~Ll~~~p~~ti~ll~~~- 589 (936)
++-+|.+-.+|+.|...+...+ + ..+++|+-..-.++..|....++|.-.
T Consensus 310 -------------lvfLY~~ydE~DnA~ltMi~h~~~Aw~h~~Fkdii~KVaN~EiyYKAi~FYL~e~P~lL~DLL~vL~ 376 (624)
T 3lvg_A 310 -------------LVFLYDKYEEYDNAIITMMNHPTDAWKEGQFKDIITKVANVELYYRAIQFYLEFKPLLLNDLLMVLS 376 (624)
T ss_dssp -------------HHHHHHHHTCHHHHHHTTTSCHHHHCCGGGGTTTGGGCSCSHHHHHHHHHHTTSCCTTSHHHHHHHC
T ss_pred -------------HHHHHhcchhHHHHHHHHHhCChhhccHHHHHHHHHHcchHHHHHHHHHHHHHhChHHHHHHHHhcc
Confidence 4447888888888877776552 1 258899888888888998888888655
Q ss_pred CCCCCCcchhHhhhcCCCCCCCCChHHHHHHHHHHHhhcCCCCHhHHHHHHHHhhcCCChHHHHHHHHHhhCCCCCCCCc
Q 002318 590 NNLNPRKLIPAMMRYSSEPHAKNETHEVIKYLEFCVHRLHNEDPGVHNLLLSLYAKQEDDSALLRFLQCKFGKGRENGPE 669 (936)
Q Consensus 590 ~~ld~~~li~~L~~~~~~~~~~~~~~~~~~YLe~li~~~~~~~~~~hn~ll~Ly~~~~~~~~Ll~fL~~~~~~~~~~~~~ 669 (936)
+++|+.+++..+.+-.. -.+...||+.+ .+...+.+.+.|-+||++.+|-+.|..-+...
T Consensus 377 prlDh~RvV~~~~k~~~-------LpLIkpYL~~V---q~~N~~aVNeAln~L~IEEEDy~~LR~SId~y---------- 436 (624)
T 3lvg_A 377 PRLDHTRAVNYFSKVKQ-------LPLVKPYLRSV---QNHNNKSVNESLNNLFITEEDYQALRTSIDAY---------- 436 (624)
T ss_dssp TTCCSTTTHHHHHTTTC-------GGGGTGGGTSC---CCSCCHHHHHHHHHHHHHTTCCHHHHHTTSSC----------
T ss_pred ccCChHHHHHHHHhcCC-------chhhHHHHHHH---HHhhHHHHHHHHHHHHhhhhhHHHHHHHHHHh----------
Confidence 48999999998876432 12333476644 34456899999999999988777766555544
Q ss_pred ccCChHHHHHHHHhcC---cceeeehhhhccccHHHHHHHHHh-cCHHHHHHHhhccCCCHHHHHHHHHHHHHHHhhccc
Q 002318 670 FFYDPKYALRLCLKEK---RMRACVHIYGMMSMHEEAVALALQ-VDPELAMAEADKVEDDEDLRKKLWLMVAKHVIEQEK 745 (936)
Q Consensus 670 ~~yd~~~aLrlc~~~~---~~~~~v~L~~~~g~~~eAl~l~l~-~di~lA~~~a~~~~~d~~~~kkLWl~ll~~~i~~~~ 745 (936)
.+||--....-++++. |.+-.++||.+.++|++|+.+.-+ +-...|++.|.... |.+ +=..|++++++..+
T Consensus 437 dNFD~i~LA~rLEkHeL~eFRrIAA~LYkkn~rw~qsi~l~KkDklykDAietAa~S~-~~e----laeeLL~yFv~~g~ 511 (624)
T 3lvg_A 437 DNFDNISLAQRLEKHELIEFRRIAAYLFKGNNRWKQSVELCKKDSLYKDAMQYASESK-DTE----LAEELLQWFLQEEK 511 (624)
T ss_dssp CCSCTTHHHHHHHTCSSHHHHHHHHHHHHTTCHHHHHSSCSSTTCCTTGGGTTTTTCC-CTT----HHHHHHHHHHHHCS
T ss_pred ccccHHHHHHHHhhCchHHHHHHHHHHHHhcccHHHHHHHHHhcccHHHHHHHHHHcC-CHH----HHHHHHHHHHHcCc
Confidence 5788666556677776 567899999999999999999887 56888999985544 555 77788999887643
Q ss_pred CCChHhHHHHHHHHHhcCCccccccccCc-----CCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002318 746 GTKRENIRKAIAFLKETDGLLKIEDILPF-----FPDFALIDDFKEAICSSLDDYNKQIEQLKQEMN 807 (936)
Q Consensus 746 ~~~~~~i~~~l~~L~~~~~~L~i~diL~~-----~p~~~~I~~~Kd~I~~~L~~y~~~i~~l~~~m~ 807 (936)
. .+ ....|=.|-.++...-+|.+ +-|+ ...+++..+++|+.+++.+.....
T Consensus 512 ~----Ec--F~a~LytCYdLlrpDvVlElaW~~~l~D~-----~mPY~Iq~~re~~~kv~~L~~~~~ 567 (624)
T 3lvg_A 512 R----EC--FGACLFTCYDLLRPDVVLETAWRHNIMDF-----AMPYFIQVMKEYLTKVDKLDASES 567 (624)
T ss_dssp T----HH--HHHHHHHTSSSSSCHHHHHHHHHSCSSSC-----CCCSSTTTTTTHHHHHHHHHHHHH
T ss_pred h----HH--HHHHHHHHhhccChHHHHHHHHHhccccc-----ccchHHHHHHHHHHHHHHHHHHHH
Confidence 1 11 12233334334433333322 1111 112335567778888877765444
No 6
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=98.24 E-value=2.1e-05 Score=88.90 Aligned_cols=169 Identities=14% Similarity=0.097 Sum_probs=119.3
Q ss_pred HHHhcccccCCHHHHHHHHHHcCChhHHHHHHHhhhhHHHHHHHHHhcccHHHHHHHHhCCC-C---------------c
Q 002318 500 AFLSDCKDVLDEATTMKLLESYGRVEELVFFASLKEQHEIVVHHYIQQGEAKKALQMLRKPA-V---------------P 563 (936)
Q Consensus 500 ~fl~~~~~~ld~~tv~~ll~~~g~~e~~l~~a~~~~dy~~ll~~yi~~~~~~~AL~~L~~~~-d---------------~ 563 (936)
..++.+-..++...+...++... -+..++-+|++.++|+.|...+...+ + .
T Consensus 261 ehl~~~~~~ini~k~~~~~~~~~-------------~w~e~~~ly~~~~e~d~A~~tm~~h~~~a~~~~~f~~~~~kv~n 327 (449)
T 1b89_A 261 EHLELFWSRVNIPKVLRAAEQAH-------------LWAELVFLYDKYEEYDNAIITMMNHPTDAWKEGQFKDIITKVAN 327 (449)
T ss_dssp HHHHHHSTTSCHHHHHHHHHTTT-------------CHHHHHHHHHHTTCHHHHHHHHHHSTTTTCCHHHHHHHHHHCSS
T ss_pred HHHHHHHHHhcCcHHHHHHHHHH-------------HHHHHHHHHHhhchHHHHHHHHHhCChhhhhhHHHHHHHhchhH
Confidence 33333334566666655555533 34456668888888888888777654 2 2
Q ss_pred hhhHHhhHHHHHhHChHHHHHHHHcc-CCCCCCcchhHhhhcCCCCCCCCChHHHHHHHHHHHhhcCCCCHhHHHHHHHH
Q 002318 564 IDLQYKFAPDLIMLDAYETVESWMTT-NNLNPRKLIPAMMRYSSEPHAKNETHEVIKYLEFCVHRLHNEDPGVHNLLLSL 642 (936)
Q Consensus 564 ~~li~k~~~~Ll~~~p~~ti~ll~~~-~~ld~~~li~~L~~~~~~~~~~~~~~~~~~YLe~li~~~~~~~~~~hn~ll~L 642 (936)
.+++|+-....+...|....+++... +++|+.+++..+..-.. -.....||+.+-. ...+.+.+.|-.|
T Consensus 328 ~elyYkai~fyl~~~p~~l~~ll~~l~~~ld~~r~v~~~~~~~~-------l~l~~~yl~~v~~---~n~~~vnealn~l 397 (449)
T 1b89_A 328 VELYYRAIQFYLEFKPLLLNDLLMVLSPRLDHTRAVNYFSKVKQ-------LPLVKPYLRSVQN---HNNKSVNESLNNL 397 (449)
T ss_dssp THHHHHHHHHHHHHCGGGHHHHHHHHGGGCCHHHHHHHHHHTTC-------TTTTHHHHHHHHT---TCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhccCcHHHHHHHHHcCC-------cHHHHHHHHHHHH---hhHHHHHHHHHHH
Confidence 58899999999999999988888665 48999999988866432 1346679987653 3468999999999
Q ss_pred hhcCCChHHHHHHHHHhhCCCCCCCCcccCChHHHHHHHHhcC---cceeeehhhhccccHH
Q 002318 643 YAKQEDDSALLRFLQCKFGKGRENGPEFFYDPKYALRLCLKEK---RMRACVHIYGMMSMHE 701 (936)
Q Consensus 643 y~~~~~~~~Ll~fL~~~~~~~~~~~~~~~yd~~~aLrlc~~~~---~~~~~v~L~~~~g~~~ 701 (936)
|++.+|-+.|..-+... .+||--....-+++|. |.+-.++||.+.++|+
T Consensus 398 ~ieeed~~~lr~si~~~----------~nfd~~~l~~~le~h~l~~~r~iaa~~~~~~~~~~ 449 (449)
T 1b89_A 398 FITEEDYQALRTSIDAY----------DNFDNISLAQRLEKHELIEFRRIAAYLFKGNNRWK 449 (449)
T ss_dssp HHHTTCHHHHHHHHHHC----------CCSCHHHHHHHHTTCSSHHHHHHHHHHHC------
T ss_pred HHhhhhHHHHHHHHHHh----------cCcCHHHHHHHHhcCchHHHHHHHHHHHHhccCCC
Confidence 99988888888888877 6898766666667776 5668889998887763
No 7
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=98.19 E-value=0.0019 Score=69.48 Aligned_cols=157 Identities=13% Similarity=0.118 Sum_probs=106.1
Q ss_pred CCceeEEEEeCC--EEEEEecCCeEEEEeC-CCCCceeeEcCCCCCCccceeEEEeCCCCCeEEEEeecCCCccEEEEec
Q 002318 21 RGVITCMSAGND--VIVLGTSKGWLIRHDF-GAGDSYDIDLSAGRPGEQSIHKVFVDPGGSHCIATIVGSGGAETFYTHA 97 (936)
Q Consensus 21 ~~~i~~l~v~~n--~l~l~~~~g~l~ridl-~~~~~~~~~l~~~~~~~~~i~~i~lDp~G~hlli~~~~~~~g~~~Y~~~ 97 (936)
.+.|++++.+++ .++.+. +|.|..||+ .+.....+...........|..+-.+|.|..+++++. +|....++.
T Consensus 51 ~~~v~~~~~~~~~~~l~~~~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~---d~~i~~~d~ 126 (337)
T 1gxr_A 51 GEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGE---ASTLSIWDL 126 (337)
T ss_dssp SSCCCEEEECSSSSEEEEEC-BSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSSEEEEEES---SSEEEEEEC
T ss_pred CCceEEEEEecCCcEEEEcC-CCeEEEEECCCCCceeeeecccccCCCCcEEEEEEcCCCCEEEEEcC---CCcEEEEEC
Confidence 457899999754 677776 899999999 5443332221110112468999999999999998887 898888877
Q ss_pred CCCCceeccCC--CCceEEEEEecCCCCCCCCcceEEEEcCCCcEEEEEEecCCcccceeeEEeeeCCCCCceeeEEEEe
Q 002318 98 KWSKPRVLSKL--KGLVVNAVAWNRQQITEASTKEIILGTDTGQLHEMAVDEKDKREKYIKLLFELNELPEAFMGLQMET 175 (936)
Q Consensus 98 ~~~k~k~L~kl--kg~~I~sVaw~~~~~~~~st~~iLiGt~~G~i~e~~i~~~~~~~~~~k~v~~l~~~~~~I~gi~~~~ 175 (936)
...+.+....+ ....|.+++|++. ...++.|+.+|.|+...+... +.+..+....++|+++.|..
T Consensus 127 ~~~~~~~~~~~~~~~~~i~~~~~~~~------~~~l~~~~~dg~v~~~d~~~~-------~~~~~~~~~~~~i~~~~~~~ 193 (337)
T 1gxr_A 127 AAPTPRIKAELTSSAPACYALAISPD------SKVCFSCCSDGNIAVWDLHNQ-------TLVRQFQGHTDGASCIDISN 193 (337)
T ss_dssp CCC--EEEEEEECSSSCEEEEEECTT------SSEEEEEETTSCEEEEETTTT-------EEEEEECCCSSCEEEEEECT
T ss_pred CCCCcceeeecccCCCceEEEEECCC------CCEEEEEeCCCcEEEEeCCCC-------ceeeeeecccCceEEEEECC
Confidence 66553333222 3457999999942 247889999999998876543 22223332236799999963
Q ss_pred eccCCCceEEEEEECCCeEEEEec
Q 002318 176 ASLSNGTRYYVMAVTPTRLYSFTG 199 (936)
Q Consensus 176 ~~~~~~~~~~i~ast~~rly~f~~ 199 (936)
+.+.++.++....++.|.-
T Consensus 194 -----~~~~l~~~~~dg~i~~~d~ 212 (337)
T 1gxr_A 194 -----DGTKLWTGGLDNTVRSWDL 212 (337)
T ss_dssp -----TSSEEEEEETTSEEEEEET
T ss_pred -----CCCEEEEEecCCcEEEEEC
Confidence 2357777777888887753
No 8
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=98.02 E-value=0.0081 Score=66.88 Aligned_cols=363 Identities=14% Similarity=0.158 Sum_probs=205.0
Q ss_pred EeCCEEEEEecCC---eEEEEeC-CCCCceeeEcCCCCCCccceeEEEeCCCCCeEEEEeecCCCccEE-EEecCCC-Cc
Q 002318 29 AGNDVIVLGTSKG---WLIRHDF-GAGDSYDIDLSAGRPGEQSIHKVFVDPGGSHCIATIVGSGGAETF-YTHAKWS-KP 102 (936)
Q Consensus 29 v~~n~l~l~~~~g---~l~ridl-~~~~~~~~~l~~~~~~~~~i~~i~lDp~G~hlli~~~~~~~g~~~-Y~~~~~~-k~ 102 (936)
-+++++|+=-..| +|..+|+ +|+++.+-++.. ...-++|+-.-+.+.. |... -.+.... |.
T Consensus 33 ESDkyicVrE~~~~~~~vvIiDl~~~~~~~rrpi~A--------dsAIMnP~~~iiALra-----g~~lQiFnle~K~kl 99 (494)
T 1bpo_A 33 ESDKFICIREKVGEQAQVVIIDMNDPSNPIRRPISA--------DSAIMNPASKVIALKA-----GKTLQIFNIEMKSKM 99 (494)
T ss_dssp EETTEEEEEECCTTCCEEEEEETTSTTSCEEEECCC--------SEEEECSSSSCEEEEE-----TTEEEEEETTTTEEE
T ss_pred ecCceEEEEecCCCCCeEEEEECCCCCcceeccccc--------ceeeeCCCCcEEEEec-----CCeEEEEchHHhhhh
Confidence 3566788776544 8999999 999987766652 3355788887555543 4333 3344332 22
Q ss_pred eeccCCCCceEEEEEecCCCCCCCCcceEEEEcCCCcEEEEEEecCCcccceeeEEeeeCCCCCceeeEEEEeeccCCCc
Q 002318 103 RVLSKLKGLVVNAVAWNRQQITEASTKEIILGTDTGQLHEMAVDEKDKREKYIKLLFELNELPEAFMGLQMETASLSNGT 182 (936)
Q Consensus 103 k~L~klkg~~I~sVaw~~~~~~~~st~~iLiGt~~G~i~e~~i~~~~~~~~~~k~v~~l~~~~~~I~gi~~~~~~~~~~~ 182 (936)
|.-. -.-+|.-=-|-. ...+-+=|.+. +|.-.+++...+.+-+..--+|.+ ..|.+-..+ .+.
T Consensus 100 ks~~--~~e~VvfWkWis-------~~~l~lVT~ta-VyHWsi~~~s~P~kvFdR~~~L~~--~QIInY~~d-----~~~ 162 (494)
T 1bpo_A 100 KAHT--MTDDVTFWKWIS-------LNTVALVTDNA-VYHWSMEGESQPVKMFDRHSSLAG--CQIINYRTD-----AKQ 162 (494)
T ss_dssp EEEE--CSSCCCEEEEEE-------TTEEEEECSSE-EEEEESSSSCCCEEEEECCGGGTT--CEEEEEEEC-----TTS
T ss_pred ccee--cCCCceEEEecC-------CCeEEEEcCCe-eEEecccCCCCchhheecchhccc--ceEEEEEEC-----CCC
Confidence 2211 112444445552 12455556655 898888654222222222223332 335554443 334
Q ss_pred eEEEEEEC---CCeEEEEecCCchHHHHhhhhcccc-------cccc--cCCCcCCCcceeeeccCCCceEEEeecCc--
Q 002318 183 RYYVMAVT---PTRLYSFTGFGSLDTVFASYLDRAV-------HFME--LPGEILNSELHFFIKQRRAVHFAWLSGAG-- 248 (936)
Q Consensus 183 ~~~i~ast---~~rly~f~~~~~l~~~f~~~~~~~~-------~~~e--l~~~~~~s~~~~~~~~~~~~~faW~t~~g-- 248 (936)
+|++++-- +.|+ .| .-+||+.-++... .|.. ++++...+.+ -.|||-+..|
T Consensus 163 kW~~l~GI~~~~~~v---~G---~mQLYS~er~~sQ~ieGhaa~F~~~~~~g~~~~~~l---------f~fa~r~~~g~k 227 (494)
T 1bpo_A 163 KWLLLTGISAQQNRV---VG---AMQLYSVDRKVSQPIEGHAASFAQFKMEGNAEESTL---------FCFAVRGQAGGK 227 (494)
T ss_dssp SEEEEEEEEEETTEE---EE---EEEEEESTTCCEEEECCSEEEEEEEECTTCSSEEEE---------EEEEECSTTCCE
T ss_pred CeEEEEeecccCCcc---cc---eEEEeeccccccchheeeeeeeEEEecCCCCCCceE---------EEEEEecCCCcE
Confidence 56654321 2222 23 1223332222111 1211 1111111111 1356665544
Q ss_pred eEEEEeccCCCCCCCCCCCccccccccccccccCCCCCCCCccccccC-CceEEEEE--CCEEEEEecCCCcEEEEEEec
Q 002318 249 IYHGGLNFGAQRSSPNGDENFVENKALLSYSKLSEGAEAVKPGSMAVS-EYHFLLLM--GNKVKVVNRISEQIIEELQFD 325 (936)
Q Consensus 249 i~~g~i~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~p~si~lT-~fHillL~--~~~l~ivn~l~~~vv~~~~~~ 325 (936)
+.+=+++..+. ..+.+... ..+. .+|+....+=|++|-++ .|-++.+. ..-|.+++..++..+|...+.
T Consensus 228 Lhi~Ei~~~~~-----~~~~f~kk--~vdv-~fppe~~~DFPvamqvs~kygviyviTK~G~i~lyDleTgt~i~~nrIs 299 (494)
T 1bpo_A 228 LHIIEVGTPPT-----GNQPFPKK--AVDV-FFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYMNRIS 299 (494)
T ss_dssp EEEEECSCCCT-----TCCCCCCE--EEEC-CCCTTSTTCCEEEEEEETTTTEEEEEETTSEEEEEETTTCCEEEEEECC
T ss_pred EEEEEcCCCcc-----CCCCccce--eeee-eCCcccccCceeEEEecccCCEEEEEecCceEEEEecccceeeeeeccc
Confidence 44433332211 11222111 1111 12222223348888666 44455443 588888999999999988873
Q ss_pred CCCCCcccceeEEEeecCCCeEEEEeCCcEEEEEcccchhhHHHHHHchhhHHHHHHhcCC--hhhHHHHHHHHHHHHHh
Q 002318 326 QTSDSISRGIIGLCSDATAGVFYAYDQNSIFQVSVNDEGRDMWKVYLDMKEYAAALANCRD--PLQRDQVYLVQAEAAFA 403 (936)
Q Consensus 326 ~~~~~~~~~~~gl~~D~~~~~~~i~S~~~i~~~~~~~e~~~~W~~ll~~~~f~~Al~~~~~--~~~~~~I~~~~~~~L~~ 403 (936)
.+.+.--+.+..++-+..+..++-+....-||+..+=++.-...+-+.|+.+|.. -..-+....++-+.||.
T Consensus 300 ------~~~iF~t~~~~~~~Gi~~Vnr~GqVl~v~v~e~~ivpyi~~~l~n~~lA~~lA~R~~LpGAd~L~~~~F~~l~~ 373 (494)
T 1bpo_A 300 ------GETIFVTAPHEATAGIIGVNRKGQVLSVCVEEENIIPYITNVLQNPDLALRMAVRNNLAGAEELFARKFNALFA 373 (494)
T ss_dssp ------SSCEEEEEEETTTTEEEEEETTCEEEEEEECTTTHHHHHHHTTCCHHHHHHHHHHTTCSSCHHHHHHHHHHHHH
T ss_pred ------CCceEEecccCCCCcEEEEccCceEEEEEEccccchhhhhhccCCHHHHHHHHHhcCCccHHHHHHHHHHHHHH
Confidence 2345444555667889999999988888888989998666667889999999863 22345568888999999
Q ss_pred cCCHHHHHHHHHHhc-CCCChHHHHHHhcCc----ChHHHHHHHHHHHhhcc
Q 002318 404 TKDFHRAASFYAKIN-YILSFEEITLKFISV----SEQDALRTFLLRKLDNL 450 (936)
Q Consensus 404 ~g~y~~Aa~~y~~~~-~~~~~E~v~lkFl~~----~~~~~L~~YL~~~l~~l 450 (936)
.|+|++||+.-+.+- +..--.+.+-+|... ++..+|..|....|+.-
T Consensus 374 ~g~y~~AA~~aA~sP~giLRt~~Ti~rFk~vp~~pgq~splL~YF~~Ll~~g 425 (494)
T 1bpo_A 374 QGNYSEAAKVAANAPKGILRTPDTIRRFQSVPAQPGQTSPLLQYFGILLDQG 425 (494)
T ss_dssp TTCHHHHHHHHHHSGGGSSCSHHHHHHHTTSCCCTTSCCHHHHHHHHHHHHS
T ss_pred cCCHHHHHHHHHhCccccccCHHHHHHHhcCCCCCCCCCHHHHHHHHHhccC
Confidence 999999999999873 223345677899764 56788999999877653
No 9
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=98.00 E-value=1.2e-08 Score=113.29 Aligned_cols=315 Identities=15% Similarity=0.109 Sum_probs=204.4
Q ss_pred hhHHHHHHhcCChhhHHHHHHHHHHHHHhcCCHHHHHHHHHHhcCCCChHHHHHHhcCcChHHHHHHHHHHHhhcccCch
Q 002318 375 KEYAAALANCRDPLQRDQVYLVQAEAAFATKDFHRAASFYAKINYILSFEEITLKFISVSEQDALRTFLLRKLDNLAKDD 454 (936)
Q Consensus 375 ~~f~~Al~~~~~~~~~~~I~~~~~~~L~~~g~y~~Aa~~y~~~~~~~~~E~v~lkFl~~~~~~~L~~YL~~~l~~l~~~~ 454 (936)
+..+.|.++|+. -....|-.+-|...+..|+..+|+..|.+..+...+.+|+-.=-..++.+.|..||.---..++ ++
T Consensus 39 ~~ldRa~eyA~~-~n~p~VWs~LgkAqL~~~~v~eAIdsyIkA~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~k-e~ 116 (624)
T 3lvg_A 39 GNLDRAYEFAER-CNEPAVWSQLAKAQLQKGMVKEAIDSYIKADDPSSYMEVVQAANTSGNWEELVKYLQMARKKAR-ES 116 (624)
T ss_dssp CCSTTTTTSSSS-CCCCCCSSSHHHHTTTSSSCTTTTTSSCCCSCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTCC-ST
T ss_pred cccHHHHHHHHH-hCCccHHHHHHHHHHccCchHHHHHHHHhCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhc-cc
Confidence 446667777652 0112233334555566789999999999998778999999998889999999999996333332 22
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhhcccchhhccchHHHHHHHHHHHHHHhcccccCCHHHHHHHHHHcCChhHHHHHHHhh
Q 002318 455 KCQITMISTWATELYLDKINRLLLEDDTALENRSSEYQSIMREFRAFLSDCKDVLDEATTMKLLESYGRVEELVFFASLK 534 (936)
Q Consensus 455 ~~~~~lL~~Wl~ely~~~l~~~~~e~~~~~~~~~~~~~~~~~~l~~fl~~~~~~ld~~tv~~ll~~~g~~e~~l~~a~~~ 534 (936)
..-..++. .| .+++++ .+++.||.... .-|...|-+-|=..|.++.+--+...+
T Consensus 117 ~IDteLi~-----ay-Ak~~rL-------------------~elEefl~~~N-~A~iq~VGDrcf~e~lYeAAKilys~i 170 (624)
T 3lvg_A 117 YVETELIF-----AL-AKTNRL-------------------AELEEFINGPN-NAHIQQVGDRCYDEKMYDAAKLLYNNV 170 (624)
T ss_dssp TTTHHHHH-----HH-HTSCSS-------------------STTTSTTSCCS-SSCTHHHHHHHHHSCCSTTSSTTGGGS
T ss_pred ccHHHHHH-----HH-HhhCcH-------------------HHHHHHHcCCC-cccHHHHHHHHHHccCHHHHHHHHHhC
Confidence 22122221 12 233333 23456666532 336677777777888888887777788
Q ss_pred hhHHHHHHHHHhcccHHHHHHHHhCCCCchhhHHhhHHHHHh-----HChHHHHHHHHccCCCCCCcchhHhhhcCCCCC
Q 002318 535 EQHEIVVHHYIQQGEAKKALQMLRKPAVPIDLQYKFAPDLIM-----LDAYETVESWMTTNNLNPRKLIPAMMRYSSEPH 609 (936)
Q Consensus 535 ~dy~~ll~~yi~~~~~~~AL~~L~~~~d~~~li~k~~~~Ll~-----~~p~~ti~ll~~~~~ld~~~li~~L~~~~~~~~ 609 (936)
.+|..+..-++..++|..|.+.-++-+.. ..+.+-...=++ ..---.+.++ +.++.|-..+..|....
T Consensus 171 sN~akLAstLV~L~~yq~AVdaArKAns~-ktWKeV~~ACvd~~EfrLAqicGLniI-----vhadeL~elv~~YE~~G- 243 (624)
T 3lvg_A 171 SNFGRLASTLVHLGEYQAAVDGARKANST-RTWKEVCFACVDGKEFRLAQMCGLHIV-----VHADELEELINYYQDRG- 243 (624)
T ss_dssp CCCTTTSSSSSSCSGGGSSTTTTTTCCSS-CSHHHHTHHHHHSCTTTTTTHHHHHHH-----CCSSCCSGGGSSSSTTC-
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHhcCCh-hHHHHHHHHHhCchHHHHHHHhcchhc-----ccHHHHHHHHHHHHhCC-
Confidence 88999999999999999999988776642 333221111111 1111123333 34555433333333221
Q ss_pred CCCChHHHHHHHHHHHhhcCCCCHhHHHHHHHHhhcCCChHHHHHHHHHhhCCCCCCCCcccCChHHHHHHHHhcCccee
Q 002318 610 AKNETHEVIKYLEFCVHRLHNEDPGVHNLLLSLYAKQEDDSALLRFLQCKFGKGRENGPEFFYDPKYALRLCLKEKRMRA 689 (936)
Q Consensus 610 ~~~~~~~~~~YLe~li~~~~~~~~~~hn~ll~Ly~~~~~~~~Ll~fL~~~~~~~~~~~~~~~yd~~~aLrlc~~~~~~~~ 689 (936)
.-++.+.-||.=+. ....-..+..-|-.||+++. ++||++.|+-.. ...++.+++|.|++..++.+
T Consensus 244 ---~f~ELIsLlEaglg-lErAHmGmFTELaILYsKY~-PeKlmEHlklf~---------sriNipKviracE~ahLW~E 309 (624)
T 3lvg_A 244 ---YFEELITMLEAALG-LERAHMGMFTELAILYSKFK-PQKMREHLELFW---------SRVNIPKVLRAAEQAHLWAE 309 (624)
T ss_dssp ---CCTTSTTTHHHHTT-STTCCHHHHHHHHHHHHSSC-TTHHHHHHTTSS---------SSSCCTTTHHHHTTTTCHHH
T ss_pred ---CHHHHHHHHHHHhC-CCchhHHHHHHHHHHHHhcC-HHHHHHHHHHHH---------HhccHHHHHHHHHHHhhHHH
Confidence 22345666665442 22233567788888999998 689999999862 45788999999999999999
Q ss_pred eehhhhccccHHHHHHHHHhc-----CHHHHHHHhhccCCCHHHHHHHHHHHHHHHhhc
Q 002318 690 CVHIYGMMSMHEEAVALALQV-----DPELAMAEADKVEDDEDLRKKLWLMVAKHVIEQ 743 (936)
Q Consensus 690 ~v~L~~~~g~~~eAl~l~l~~-----di~lA~~~a~~~~~d~~~~kkLWl~ll~~~i~~ 743 (936)
.||||..-..|+.|+..++.+ |-+.-++++.+.. +.| ++-+.+.+.++.
T Consensus 310 lvfLY~~ydE~DnA~ltMi~h~~~Aw~h~~Fkdii~KVa-N~E----iyYKAi~FYL~e 363 (624)
T 3lvg_A 310 LVFLYDKYEEYDNAIITMMNHPTDAWKEGQFKDIITKVA-NVE----LYYRAIQFYLEF 363 (624)
T ss_dssp HHHHHHHHTCHHHHHHTTTSCHHHHCCGGGGTTTGGGCS-CSH----HHHHHHHHHTTS
T ss_pred HHHHHhcchhHHHHHHHHHhCChhhccHHHHHHHHHHcc-hHH----HHHHHHHHHHHh
Confidence 999999999999999988873 3444455554544 333 666666666654
No 10
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=97.84 E-value=0.00085 Score=72.25 Aligned_cols=149 Identities=11% Similarity=0.119 Sum_probs=107.9
Q ss_pred CCceeEEEEeC--CEEEEEecCCeEEEEeC-CCCCceeeEcCCCCCCccceeEEEeCCCCCeEEEEeecCCCccEEEEec
Q 002318 21 RGVITCMSAGN--DVIVLGTSKGWLIRHDF-GAGDSYDIDLSAGRPGEQSIHKVFVDPGGSHCIATIVGSGGAETFYTHA 97 (936)
Q Consensus 21 ~~~i~~l~v~~--n~l~l~~~~g~l~ridl-~~~~~~~~~l~~~~~~~~~i~~i~lDp~G~hlli~~~~~~~g~~~Y~~~ 97 (936)
.+.|++++.+. +.++.+..+|.|..+|+ .+..+..+.. ...+..+-++|.|.++++++. +|..+.++.
T Consensus 183 ~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~------~~~v~~~~~s~~~~~l~~~~~---~~~i~~~~~ 253 (337)
T 1gxr_A 183 TDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQHDF------TSQIFSLGYCPTGEWLAVGME---SSNVEVLHV 253 (337)
T ss_dssp SSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEEC------SSCEEEEEECTTSSEEEEEET---TSCEEEEET
T ss_pred cCceEEEEECCCCCEEEEEecCCcEEEEECCCCceEeeecC------CCceEEEEECCCCCEEEEEcC---CCcEEEEEC
Confidence 45799999964 48999999999999999 5554444443 257899999999999999887 898888887
Q ss_pred CCCCceeccCCCCceEEEEEecCCCCCCCCcceEEEEcCCCcEEEEEEecCCcccceeeEEeeeCCCCCceeeEEEEeec
Q 002318 98 KWSKPRVLSKLKGLVVNAVAWNRQQITEASTKEIILGTDTGQLHEMAVDEKDKREKYIKLLFELNELPEAFMGLQMETAS 177 (936)
Q Consensus 98 ~~~k~k~L~klkg~~I~sVaw~~~~~~~~st~~iLiGt~~G~i~e~~i~~~~~~~~~~k~v~~l~~~~~~I~gi~~~~~~ 177 (936)
...+...+.. ....|.+++|++. ...++.|+.+|.|....+...+ .+..... +.+|+++.|..
T Consensus 254 ~~~~~~~~~~-~~~~v~~~~~~~~------~~~l~~~~~dg~i~~~~~~~~~-------~~~~~~~-~~~v~~~~~s~-- 316 (337)
T 1gxr_A 254 NKPDKYQLHL-HESCVLSLKFAYC------GKWFVSTGKDNLLNAWRTPYGA-------SIFQSKE-SSSVLSCDISV-- 316 (337)
T ss_dssp TSSCEEEECC-CSSCEEEEEECTT------SSEEEEEETTSEEEEEETTTCC-------EEEEEEC-SSCEEEEEECT--
T ss_pred CCCCeEEEcC-CccceeEEEECCC------CCEEEEecCCCcEEEEECCCCe-------EEEEecC-CCcEEEEEECC--
Confidence 7666555543 3458999999942 2368889999999888765431 1122222 36799999863
Q ss_pred cCCCceEEEEEECCCeEEEEe
Q 002318 178 LSNGTRYYVMAVTPTRLYSFT 198 (936)
Q Consensus 178 ~~~~~~~~i~ast~~rly~f~ 198 (936)
+.++++.++....++-|.
T Consensus 317 ---~~~~l~~~~~dg~i~iw~ 334 (337)
T 1gxr_A 317 ---DDKYIVTGSGDKKATVYE 334 (337)
T ss_dssp ---TSCEEEEEETTSCEEEEE
T ss_pred ---CCCEEEEecCCCeEEEEE
Confidence 335777777777777663
No 11
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=97.83 E-value=0.0045 Score=68.77 Aligned_cols=151 Identities=17% Similarity=0.157 Sum_probs=104.4
Q ss_pred CCceeEEEEeC--CEEEEEecCCeEEEEeCCCCCceeeEcCCCCCCccceeEEEeCCCCCeEEEEeecCCCccEEEEecC
Q 002318 21 RGVITCMSAGN--DVIVLGTSKGWLIRHDFGAGDSYDIDLSAGRPGEQSIHKVFVDPGGSHCIATIVGSGGAETFYTHAK 98 (936)
Q Consensus 21 ~~~i~~l~v~~--n~l~l~~~~g~l~ridl~~~~~~~~~l~~~~~~~~~i~~i~lDp~G~hlli~~~~~~~g~~~Y~~~~ 98 (936)
.+.|+|++.+. +.|+.|..+|.|..+|..+..+..+.-+ ...|..+..+|.|.++++++. +|....++..
T Consensus 108 ~~~v~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~-----~~~v~~~~~~~~~~~l~~~~~---d~~i~iwd~~ 179 (425)
T 1r5m_A 108 TNQVTCLAWSHDGNSIVTGVENGELRLWNKTGALLNVLNFH-----RAPIVSVKWNKDGTHIISMDV---ENVTILWNVI 179 (425)
T ss_dssp CBCEEEEEECTTSSEEEEEETTSCEEEEETTSCEEEEECCC-----CSCEEEEEECTTSSEEEEEET---TCCEEEEETT
T ss_pred CCceEEEEEcCCCCEEEEEeCCCeEEEEeCCCCeeeeccCC-----CccEEEEEECCCCCEEEEEec---CCeEEEEECC
Confidence 34799999984 5899999999999999744444444333 468999999999999998887 8988888765
Q ss_pred CCCceeccCCCCce---------------EEEEEecCCCCCCCCcceEEEEcCCCcEEEEEEecCCcccceeeEEeeeCC
Q 002318 99 WSKPRVLSKLKGLV---------------VNAVAWNRQQITEASTKEIILGTDTGQLHEMAVDEKDKREKYIKLLFELNE 163 (936)
Q Consensus 99 ~~k~k~L~klkg~~---------------I~sVaw~~~~~~~~st~~iLiGt~~G~i~e~~i~~~~~~~~~~k~v~~l~~ 163 (936)
..+.....+..... |.+++|.+. +.+++|+.+|.|+...+.... ... .+..
T Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~g~i~~~d~~~~~----~~~---~~~~ 245 (425)
T 1r5m_A 180 SGTVMQHFELKETGGSSINAENHSGDGSLGVDVEWVDD-------DKFVIPGPKGAIFVYQITEKT----PTG---KLIG 245 (425)
T ss_dssp TTEEEEEECCC---------------CCCBSCCEEEET-------TEEEEECGGGCEEEEETTCSS----CSE---EECC
T ss_pred CCcEEEEeeccccCccceeeccccCCcceeeEEEEcCC-------CEEEEEcCCCeEEEEEcCCCc----eee---eecc
Confidence 54322221222222 889999842 479999999999988775431 112 2222
Q ss_pred CCCceeeEEEEeeccCCCceEEEEEECCCeEEEEe
Q 002318 164 LPEAFMGLQMETASLSNGTRYYVMAVTPTRLYSFT 198 (936)
Q Consensus 164 ~~~~I~gi~~~~~~~~~~~~~~i~ast~~rly~f~ 198 (936)
..++|+++.|.. +.++++.++....++-|.
T Consensus 246 ~~~~i~~~~~~~-----~~~~l~~~~~d~~i~i~d 275 (425)
T 1r5m_A 246 HHGPISVLEFND-----TNKLLLSASDDGTLRIWH 275 (425)
T ss_dssp CSSCEEEEEEET-----TTTEEEEEETTSCEEEEC
T ss_pred CCCceEEEEECC-----CCCEEEEEcCCCEEEEEE
Confidence 236799999973 235777777777787775
No 12
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=97.82 E-value=0.048 Score=59.98 Aligned_cols=161 Identities=10% Similarity=0.026 Sum_probs=108.3
Q ss_pred CCceeEEEEeC---CEEEEEecCCeEEEEeC-CCCCceeeEcCC--------CCCCccceeEEEeCC-CCCeEEEEeecC
Q 002318 21 RGVITCMSAGN---DVIVLGTSKGWLIRHDF-GAGDSYDIDLSA--------GRPGEQSIHKVFVDP-GGSHCIATIVGS 87 (936)
Q Consensus 21 ~~~i~~l~v~~---n~l~l~~~~g~l~ridl-~~~~~~~~~l~~--------~~~~~~~i~~i~lDp-~G~hlli~~~~~ 87 (936)
.+.|+|++.+. +.++.|..+|.|..+|+ .+.....+.... .......|..+-..| .|..++.++.
T Consensus 43 ~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~-- 120 (408)
T 4a11_B 43 GGGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSVETVQWYPHDTGMFTSSSF-- 120 (408)
T ss_dssp SSCEEEEEECTTTCCEEEEEETTSCEEEEECCCCSSSSCEEECEEEEECTTCTTCCSSCEEEEEECTTCTTCEEEEET--
T ss_pred CCcEEEEEEecCCCCEEEEEcCCCeEEEEECCCCcccceEeccccccccccccccCCCcEEEEEEccCCCcEEEEEeC--
Confidence 46799999975 78999999999999999 555443333110 011246899999999 6667777776
Q ss_pred CCccEEEEecCCCCceeccCCCCceEEEEEecCCCCCCCCcceEEEEcCCCcEEEEEEecCCcccceeeEEeeeCCCCCc
Q 002318 88 GGAETFYTHAKWSKPRVLSKLKGLVVNAVAWNRQQITEASTKEIILGTDTGQLHEMAVDEKDKREKYIKLLFELNELPEA 167 (936)
Q Consensus 88 ~~g~~~Y~~~~~~k~k~L~klkg~~I~sVaw~~~~~~~~st~~iLiGt~~G~i~e~~i~~~~~~~~~~k~v~~l~~~~~~ 167 (936)
+|....++....+.....+ ....+.+++|.+.. .+..-++.|+.+|.|....+.... ... .+....++
T Consensus 121 -d~~i~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~---~~~~~~~~~~~~~~v~~~d~~~~~----~~~---~~~~~~~~ 188 (408)
T 4a11_B 121 -DKTLKVWDTNTLQTADVFN-FEETVYSHHMSPVS---TKHCLVAVGTRGPKVQLCDLKSGS----CSH---ILQGHRQE 188 (408)
T ss_dssp -TSEEEEEETTTTEEEEEEE-CSSCEEEEEECSSC---SSCCEEEEEESSSSEEEEESSSSC----CCE---EECCCCSC
T ss_pred -CCeEEEeeCCCCccceecc-CCCceeeeEeecCC---CCCcEEEEEcCCCeEEEEeCCCcc----eee---eecCCCCc
Confidence 7888888776654333333 34579999998532 123478889999999998876431 122 23322367
Q ss_pred eeeEEEEeeccCCCceEEEEEECCCeEEEEec
Q 002318 168 FMGLQMETASLSNGTRYYVMAVTPTRLYSFTG 199 (936)
Q Consensus 168 I~gi~~~~~~~~~~~~~~i~ast~~rly~f~~ 199 (936)
|+++.|.. .....++.++....++-|.-
T Consensus 189 v~~~~~~~----~~~~ll~~~~~dg~i~i~d~ 216 (408)
T 4a11_B 189 ILAVSWSP----RYDYILATASADSRVKLWDV 216 (408)
T ss_dssp EEEEEECS----SCTTEEEEEETTSCEEEEET
T ss_pred EEEEEECC----CCCcEEEEEcCCCcEEEEEC
Confidence 99999973 22235666677777887753
No 13
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=97.81 E-value=0.018 Score=63.63 Aligned_cols=162 Identities=12% Similarity=0.027 Sum_probs=107.8
Q ss_pred CCCceeEEEEeCCEEEEEecCCeEEEEeC-CCC------CceeeEcCCCCCCccceeEEEeCCC----C---CeEEEEee
Q 002318 20 GRGVITCMSAGNDVIVLGTSKGWLIRHDF-GAG------DSYDIDLSAGRPGEQSIHKVFVDPG----G---SHCIATIV 85 (936)
Q Consensus 20 ~~~~i~~l~v~~n~l~l~~~~g~l~ridl-~~~------~~~~~~l~~~~~~~~~i~~i~lDp~----G---~hlli~~~ 85 (936)
-.+.|+|++.+++.++.|..+|.|..||+ .+. .+..+.-+ ...|..+...|. | .++++++.
T Consensus 15 h~~~i~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~h-----~~~v~~~~~~~~~~~~g~~~~~l~s~~~ 89 (397)
T 1sq9_A 15 HDADIFSVSACNSFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVH-----KSGLHHVDVLQAIERDAFELCLVATTSF 89 (397)
T ss_dssp SSSCEEEEEECSSEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECC-----TTCEEEEEEEEEEETTTEEEEEEEEEET
T ss_pred hhcCeEEEEecCCeEEEEcCCCEEEEEECCCcccccCCCcceEEecC-----CCcEEEEEEecccccCCccccEEEEEcC
Confidence 34679999999999999999999999999 544 23344433 467999999999 9 88888887
Q ss_pred cCCCccEEEEecCCCC------ceeccCCC----CceEEEEEecCCCCCCCCcce-EEEEcCCCcEEEEEEec------C
Q 002318 86 GSGGAETFYTHAKWSK------PRVLSKLK----GLVVNAVAWNRQQITEASTKE-IILGTDTGQLHEMAVDE------K 148 (936)
Q Consensus 86 ~~~~g~~~Y~~~~~~k------~k~L~klk----g~~I~sVaw~~~~~~~~st~~-iLiGt~~G~i~e~~i~~------~ 148 (936)
+|..+.++....+ .+.+.... +..|.+++|++... .+... ++.|+.+|.|+...+.. .
T Consensus 90 ---dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~--~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~ 164 (397)
T 1sq9_A 90 ---SGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASND--RLLSHRLVATDVKGTTYIWKFHPFADESNS 164 (397)
T ss_dssp ---TSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC------CEEEEEEETTSCEEEEEEESSSSHHHH
T ss_pred ---CCCEEEEEccCCcccccccceeecccccccCCCcEEEEEEeeccC--CCCceEEEEEeCCCcEEEEeCCcccccccc
Confidence 8988877755444 34444322 35899999993210 12235 88899999999988875 2
Q ss_pred CcccceeeE--Eeee-----CCCCCceeeEEEEeeccCCCceEEEEEECCCeEEEEec
Q 002318 149 DKREKYIKL--LFEL-----NELPEAFMGLQMETASLSNGTRYYVMAVTPTRLYSFTG 199 (936)
Q Consensus 149 ~~~~~~~k~--v~~l-----~~~~~~I~gi~~~~~~~~~~~~~~i~ast~~rly~f~~ 199 (936)
.. .+ +.. .+.. .....+|+++.|.. +. .++.++....++.|.-
T Consensus 165 ~~-~~-~~~~~~~~~~~~~~~~~~~~i~~~~~~~-----~~-~l~~~~~dg~i~i~d~ 214 (397)
T 1sq9_A 165 LT-LN-WSPTLELQGTVESPMTPSQFATSVDISE-----RG-LIATGFNNGTVQISEL 214 (397)
T ss_dssp TT-TC-CCCEEEEEEEECCSSSSCCCCCEEEECT-----TS-EEEEECTTSEEEEEET
T ss_pred ce-ee-ccCcceeeeeeccccCCCCCceEEEECC-----Cc-eEEEEeCCCcEEEEEC
Confidence 11 11 100 1111 11236799999972 22 5555555777887754
No 14
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=97.81 E-value=0.016 Score=64.64 Aligned_cols=149 Identities=12% Similarity=0.083 Sum_probs=105.6
Q ss_pred eeEEEEeCCEEEEEecCCeEEEEeC-CCCCceeeEcCCCCCCccceeEEEeCCCCCeEEEEeecCCCccEEEEecCCCC-
Q 002318 24 ITCMSAGNDVIVLGTSKGWLIRHDF-GAGDSYDIDLSAGRPGEQSIHKVFVDPGGSHCIATIVGSGGAETFYTHAKWSK- 101 (936)
Q Consensus 24 i~~l~v~~n~l~l~~~~g~l~ridl-~~~~~~~~~l~~~~~~~~~i~~i~lDp~G~hlli~~~~~~~g~~~Y~~~~~~k- 101 (936)
+.+++.+++.++.+..+|.|..||+ .+.....+..+ ....|..+-..|.|.++++++. +|....+.....+
T Consensus 96 ~~~~~~s~~~l~~~~~d~~v~lw~~~~~~~~~~~~~~----~~~~v~~v~~s~~~~~l~~~~~---dg~i~iwd~~~~~~ 168 (401)
T 4aez_A 96 LNLLDWSNLNVVAVALERNVYVWNADSGSVSALAETD----ESTYVASVKWSHDGSFLSVGLG---NGLVDIYDVESQTK 168 (401)
T ss_dssp CBCEEECTTSEEEEEETTEEEEEETTTCCEEEEEECC----TTCCEEEEEECTTSSEEEEEET---TSCEEEEETTTCCE
T ss_pred EEEEeecCCCEEEEECCCeEEEeeCCCCcEeEeeecC----CCCCEEEEEECCCCCEEEEECC---CCeEEEEECcCCeE
Confidence 4458888888888889999999999 55444444443 1468999999999999999988 8998888765544
Q ss_pred ceeccCCCCceEEEEEecCCCCCCCCcceEEEEcCCCcEEEEEEecCCcccceeeEEeeeCCCCCceeeEEEEeeccCCC
Q 002318 102 PRVLSKLKGLVVNAVAWNRQQITEASTKEIILGTDTGQLHEMAVDEKDKREKYIKLLFELNELPEAFMGLQMETASLSNG 181 (936)
Q Consensus 102 ~k~L~klkg~~I~sVaw~~~~~~~~st~~iLiGt~~G~i~e~~i~~~~~~~~~~k~v~~l~~~~~~I~gi~~~~~~~~~~ 181 (936)
.+.+. .....|.+++|++ ..++.|+.+|.|....+.... ..... +.-. .++|+++.|.. +
T Consensus 169 ~~~~~-~~~~~v~~~~~~~--------~~l~~~~~dg~i~i~d~~~~~---~~~~~-~~~~--~~~v~~~~~~~-----~ 228 (401)
T 4aez_A 169 LRTMA-GHQARVGCLSWNR--------HVLSSGSRSGAIHHHDVRIAN---HQIGT-LQGH--SSEVCGLAWRS-----D 228 (401)
T ss_dssp EEEEC-CCSSCEEEEEEET--------TEEEEEETTSEEEEEETTSSS---CEEEE-EECC--SSCEEEEEECT-----T
T ss_pred EEEec-CCCCceEEEEECC--------CEEEEEcCCCCEEEEecccCc---ceeeE-EcCC--CCCeeEEEEcC-----C
Confidence 33333 2345899999962 278999999999988775321 11222 2222 36799999973 3
Q ss_pred ceEEEEEECCCeEEEEec
Q 002318 182 TRYYVMAVTPTRLYSFTG 199 (936)
Q Consensus 182 ~~~~i~ast~~rly~f~~ 199 (936)
.++++.++....++-|.-
T Consensus 229 ~~~l~s~~~d~~v~iwd~ 246 (401)
T 4aez_A 229 GLQLASGGNDNVVQIWDA 246 (401)
T ss_dssp SSEEEEEETTSCEEEEET
T ss_pred CCEEEEEeCCCeEEEccC
Confidence 367777777777887754
No 15
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=97.78 E-value=0.00035 Score=76.30 Aligned_cols=163 Identities=3% Similarity=-0.044 Sum_probs=109.9
Q ss_pred CCCceeEEEEe------CCEEEEEecCCeEEEEeC-CCCCceeeEcCCCCCCccceeEEEeCCC----CCeEEEEeecCC
Q 002318 20 GRGVITCMSAG------NDVIVLGTSKGWLIRHDF-GAGDSYDIDLSAGRPGEQSIHKVFVDPG----GSHCIATIVGSG 88 (936)
Q Consensus 20 ~~~~i~~l~v~------~n~l~l~~~~g~l~ridl-~~~~~~~~~l~~~~~~~~~i~~i~lDp~----G~hlli~~~~~~ 88 (936)
-.+.|+|++.+ +..++.+..+|.|..+|+ ....+..+.-.........|..+-..|. |..+++++.
T Consensus 17 h~~~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~--- 93 (366)
T 3k26_A 17 HNQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRLLQSYVDADADENFYTCAWTYDSNTSHPLLAVAGS--- 93 (366)
T ss_dssp TCSCEEEEEECTTCCTTSCEEEEEEETTEEEEEEECGGGCEEEEEEEECSCTTCCEEEEEEEECTTTCCEEEEEEET---
T ss_pred CCCceEEEEEecccCCCCceEEEECCCCEEEEEEcCCCcEEEeeeeccccCCCCcEEEEEeccCCCCCCCEEEEecC---
Confidence 34679999999 567888888999999999 5555555543322222467899988888 667777777
Q ss_pred CccEEEEecCCCCc-eeccCCCCceEEEEEecCCCCCCCCcceEEEEcCCCcEEEEEEecCCcccceeeEEeeeCCCCCc
Q 002318 89 GAETFYTHAKWSKP-RVLSKLKGLVVNAVAWNRQQITEASTKEIILGTDTGQLHEMAVDEKDKREKYIKLLFELNELPEA 167 (936)
Q Consensus 89 ~g~~~Y~~~~~~k~-k~L~klkg~~I~sVaw~~~~~~~~st~~iLiGt~~G~i~e~~i~~~~~~~~~~k~v~~l~~~~~~ 167 (936)
+|....++....+. +.+. -....|.+++|++. +...++.|+.+|.|....+... +....+-.+.....+
T Consensus 94 dg~i~v~d~~~~~~~~~~~-~~~~~i~~~~~~~~-----~~~~l~s~~~dg~i~iwd~~~~----~~~~~~~~~~~~~~~ 163 (366)
T 3k26_A 94 RGIIRIINPITMQCIKHYV-GHGNAINELKFHPR-----DPNLLLSVSKDHALRLWNIQTD----TLVAIFGGVEGHRDE 163 (366)
T ss_dssp TCEEEEECTTTCCEEEEEE-SCCSCEEEEEECSS-----CTTEEEEEETTSCEEEEETTTT----EEEEEECSTTSCSSC
T ss_pred CCEEEEEEchhceEeeeec-CCCCcEEEEEECCC-----CCCEEEEEeCCCeEEEEEeecC----eEEEEecccccccCc
Confidence 88888887655443 2232 23468999999952 2237888999999998877543 112221111222467
Q ss_pred eeeEEEEeeccCCCceEEEEEECCCeEEEEecC
Q 002318 168 FMGLQMETASLSNGTRYYVMAVTPTRLYSFTGF 200 (936)
Q Consensus 168 I~gi~~~~~~~~~~~~~~i~ast~~rly~f~~~ 200 (936)
|+++.|.. +.+.++.++....++.|.-.
T Consensus 164 v~~~~~~~-----~~~~l~~~~~dg~i~i~d~~ 191 (366)
T 3k26_A 164 VLSADYDL-----LGEKIMSCGMDHSLKLWRIN 191 (366)
T ss_dssp EEEEEECT-----TSSEEEEEETTSCEEEEESC
T ss_pred eeEEEECC-----CCCEEEEecCCCCEEEEECC
Confidence 99999973 33577777777888878643
No 16
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=97.75 E-value=0.0089 Score=73.32 Aligned_cols=153 Identities=7% Similarity=0.015 Sum_probs=111.1
Q ss_pred CCceeEEEEeC--CEEEEEecCCeEEEEeC-CCCCceeeEcCCCCCCccceeEEEeCCCCCeEEEEeecCCCccEEEEec
Q 002318 21 RGVITCMSAGN--DVIVLGTSKGWLIRHDF-GAGDSYDIDLSAGRPGEQSIHKVFVDPGGSHCIATIVGSGGAETFYTHA 97 (936)
Q Consensus 21 ~~~i~~l~v~~--n~l~l~~~~g~l~ridl-~~~~~~~~~l~~~~~~~~~i~~i~lDp~G~hlli~~~~~~~g~~~Y~~~ 97 (936)
++.|+|++.++ +.++.|..+|.|..||+ .+..+..+..+ ...|..+-.+|.|..+++++. +|....++.
T Consensus 13 ~~~v~~i~~sp~~~~la~~~~~g~v~iwd~~~~~~~~~~~~~-----~~~v~~~~~s~~~~~l~~~~~---dg~i~vw~~ 84 (814)
T 3mkq_A 13 SDRVKGIDFHPTEPWVLTTLYSGRVEIWNYETQVEVRSIQVT-----ETPVRAGKFIARKNWIIVGSD---DFRIRVFNY 84 (814)
T ss_dssp CSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECC-----SSCEEEEEEEGGGTEEEEEET---TSEEEEEET
T ss_pred CCceEEEEECCCCCEEEEEeCCCEEEEEECCCCceEEEEecC-----CCcEEEEEEeCCCCEEEEEeC---CCeEEEEEC
Confidence 46799999995 58999999999999999 65555556544 468999999999999999888 899988876
Q ss_pred CCCCc-eeccCCCCceEEEEEecCCCCCCCCcceEEEEcCCCcEEEEEEecCCcccceeeEEeeeCCCCCceeeEEEEee
Q 002318 98 KWSKP-RVLSKLKGLVVNAVAWNRQQITEASTKEIILGTDTGQLHEMAVDEKDKREKYIKLLFELNELPEAFMGLQMETA 176 (936)
Q Consensus 98 ~~~k~-k~L~klkg~~I~sVaw~~~~~~~~st~~iLiGt~~G~i~e~~i~~~~~~~~~~k~v~~l~~~~~~I~gi~~~~~ 176 (936)
...+. ..+.. ....|++++|++. ...++.|+.+|.|....+..+ ......+.-. +++|+++.|..
T Consensus 85 ~~~~~~~~~~~-~~~~v~~~~~s~~------~~~l~~~~~dg~i~vw~~~~~----~~~~~~~~~~--~~~v~~~~~~p- 150 (814)
T 3mkq_A 85 NTGEKVVDFEA-HPDYIRSIAVHPT------KPYVLSGSDDLTVKLWNWENN----WALEQTFEGH--EHFVMCVAFNP- 150 (814)
T ss_dssp TTCCEEEEEEC-CSSCEEEEEECSS------SSEEEEEETTSEEEEEEGGGT----SEEEEEEECC--SSCEEEEEEET-
T ss_pred CCCcEEEEEec-CCCCEEEEEEeCC------CCEEEEEcCCCEEEEEECCCC----ceEEEEEcCC--CCcEEEEEEEc-
Confidence 55442 33332 3357999999943 236888999999988877543 1222323333 36799999973
Q ss_pred ccCCCceEEEEEECCCeEEEEe
Q 002318 177 SLSNGTRYYVMAVTPTRLYSFT 198 (936)
Q Consensus 177 ~~~~~~~~~i~ast~~rly~f~ 198 (936)
.+.+.++.++....+.-|.
T Consensus 151 ---~~~~~l~~~~~dg~v~vwd 169 (814)
T 3mkq_A 151 ---KDPSTFASGCLDRTVKVWS 169 (814)
T ss_dssp ---TEEEEEEEEETTSEEEEEE
T ss_pred ---CCCCEEEEEeCCCeEEEEE
Confidence 1335777777778888775
No 17
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=97.75 E-value=0.0016 Score=70.02 Aligned_cols=152 Identities=10% Similarity=0.001 Sum_probs=107.3
Q ss_pred CCceeEEEEeC--CEEEEEecCCeEEEEeC-CCCCceeeEcCCCCCCccceeEEEeCCCCCeEEEEeecCCCccEEEEec
Q 002318 21 RGVITCMSAGN--DVIVLGTSKGWLIRHDF-GAGDSYDIDLSAGRPGEQSIHKVFVDPGGSHCIATIVGSGGAETFYTHA 97 (936)
Q Consensus 21 ~~~i~~l~v~~--n~l~l~~~~g~l~ridl-~~~~~~~~~l~~~~~~~~~i~~i~lDp~G~hlli~~~~~~~g~~~Y~~~ 97 (936)
.+.|+++++++ +.|+.|..+|.|..+|+ .+.....+.-+ ...|..+-.+|.|.+++.++. +|....++.
T Consensus 23 ~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~h-----~~~v~~~~~~~~~~~l~s~~~---d~~i~vwd~ 94 (312)
T 4ery_A 23 TKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGH-----KLGISDVAWSSDSNLLVSASD---DKTLKIWDV 94 (312)
T ss_dssp SSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCC-----SSCEEEEEECTTSSEEEEEET---TSEEEEEET
T ss_pred CCcEEEEEECCCCCEEEEeeCCCeEEEEeCCCcccchhhccC-----CCceEEEEEcCCCCEEEEECC---CCEEEEEEC
Confidence 35699999986 47889999999999999 54433333322 467999999999999998888 899888887
Q ss_pred CCCCce-eccCCCCceEEEEEecCCCCCCCCcceEEEEcCCCcEEEEEEecCCcccceeeEEeeeCCCCCceeeEEEEee
Q 002318 98 KWSKPR-VLSKLKGLVVNAVAWNRQQITEASTKEIILGTDTGQLHEMAVDEKDKREKYIKLLFELNELPEAFMGLQMETA 176 (936)
Q Consensus 98 ~~~k~k-~L~klkg~~I~sVaw~~~~~~~~st~~iLiGt~~G~i~e~~i~~~~~~~~~~k~v~~l~~~~~~I~gi~~~~~ 176 (936)
...+.. .+. .....|.+++|++. ...++.|+.+|.|....+... +.+..+.....+|+++.|..
T Consensus 95 ~~~~~~~~~~-~~~~~v~~~~~~~~------~~~l~s~~~d~~i~iwd~~~~-------~~~~~~~~~~~~v~~~~~~~- 159 (312)
T 4ery_A 95 SSGKCLKTLK-GHSNYVFCCNFNPQ------SNLIVSGSFDESVRIWDVKTG-------KCLKTLPAHSDPVSAVHFNR- 159 (312)
T ss_dssp TTCCEEEEEE-CCSSCEEEEEECSS------SSEEEEEETTSCEEEEETTTC-------CEEEEECCCSSCEEEEEECT-
T ss_pred CCCcEEEEEc-CCCCCEEEEEEcCC------CCEEEEEeCCCcEEEEECCCC-------EEEEEecCCCCcEEEEEEcC-
Confidence 655432 232 23457999999942 237888999999988776543 12223333236799999863
Q ss_pred ccCCCceEEEEEECCCeEEEEec
Q 002318 177 SLSNGTRYYVMAVTPTRLYSFTG 199 (936)
Q Consensus 177 ~~~~~~~~~i~ast~~rly~f~~ 199 (936)
+.+.++.++....+.-|.-
T Consensus 160 ----~~~~l~~~~~d~~i~~wd~ 178 (312)
T 4ery_A 160 ----DGSLIVSSSYDGLCRIWDT 178 (312)
T ss_dssp ----TSSEEEEEETTSCEEEEET
T ss_pred ----CCCEEEEEeCCCcEEEEEC
Confidence 2357777777777777753
No 18
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=97.73 E-value=0.0013 Score=73.11 Aligned_cols=162 Identities=14% Similarity=0.150 Sum_probs=107.9
Q ss_pred CCceeEEEEeCC-EEEEEecCCeEEEEeC-CCCCceeeEc---CCCCCCccceeEEEeCCCCCeEEEEeecCCC---ccE
Q 002318 21 RGVITCMSAGND-VIVLGTSKGWLIRHDF-GAGDSYDIDL---SAGRPGEQSIHKVFVDPGGSHCIATIVGSGG---AET 92 (936)
Q Consensus 21 ~~~i~~l~v~~n-~l~l~~~~g~l~ridl-~~~~~~~~~l---~~~~~~~~~i~~i~lDp~G~hlli~~~~~~~---g~~ 92 (936)
...|++++++.+ .++.|..+|.|..+|+ .+..+..+.. +.. ....|..+.++|.|.++++++. + |..
T Consensus 186 ~~~i~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~h~~--~~~~i~~i~~~~~~~~l~~~~~---d~~~g~i 260 (397)
T 1sq9_A 186 SQFATSVDISERGLIATGFNNGTVQISELSTLRPLYNFESQHSMIN--NSNSIRSVKFSPQGSLLAIAHD---SNSFGCI 260 (397)
T ss_dssp CCCCCEEEECTTSEEEEECTTSEEEEEETTTTEEEEEEECCC---C--CCCCEEEEEECSSTTEEEEEEE---ETTEEEE
T ss_pred CCCceEEEECCCceEEEEeCCCcEEEEECCCCceeEEEeccccccc--cCCccceEEECCCCCEEEEEec---CCCCceE
Confidence 456999999866 8888889999999999 5555555554 210 1367999999999999999888 7 888
Q ss_pred EEEecCCCCc-eeccCC------------CCceEEEEEecCCCCCCCCcceEEEEcCCCcEEEEEEecCCcccceeeEEe
Q 002318 93 FYTHAKWSKP-RVLSKL------------KGLVVNAVAWNRQQITEASTKEIILGTDTGQLHEMAVDEKDKREKYIKLLF 159 (936)
Q Consensus 93 ~Y~~~~~~k~-k~L~kl------------kg~~I~sVaw~~~~~~~~st~~iLiGt~~G~i~e~~i~~~~~~~~~~k~v~ 159 (936)
..+.....+. +.+... ....|.+++|++. ..-++.|+.+|.|....+... +.+.. +
T Consensus 261 ~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~------~~~l~~~~~dg~i~iwd~~~~----~~~~~-~ 329 (397)
T 1sq9_A 261 TLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDS------GETLCSAGWDGKLRFWDVKTK----ERITT-L 329 (397)
T ss_dssp EEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSS------SSEEEEEETTSEEEEEETTTT----EEEEE-E
T ss_pred EEEECCCCcccceeccCcccccccccccccCCcEEEEEECCC------CCEEEEEeCCCeEEEEEcCCC----ceeEE-E
Confidence 7777655442 223210 3458999999942 237888999999988876543 11222 2
Q ss_pred eeC----CC---------------CCceeeEEEEeecc-----CCCceEEEEEECCCeEEEEe
Q 002318 160 ELN----EL---------------PEAFMGLQMETASL-----SNGTRYYVMAVTPTRLYSFT 198 (936)
Q Consensus 160 ~l~----~~---------------~~~I~gi~~~~~~~-----~~~~~~~i~ast~~rly~f~ 198 (936)
..+ .- .++|+++.|..-.. +.+.++++.++....+.-|.
T Consensus 330 ~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~l~s~~~dg~i~iw~ 392 (397)
T 1sq9_A 330 NMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKGWRSGMGADLNESLCCVCLDRSIRWFR 392 (397)
T ss_dssp ECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEECTTTSBSTTCTTSCEEEEEETTTEEEEEE
T ss_pred ecccCcccchhhhhccccccccccCCceeEEEeccccccccccccccceEEEecCCCcEEEEE
Confidence 210 11 36799999984100 00115777777777777664
No 19
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=97.73 E-value=0.027 Score=60.95 Aligned_cols=158 Identities=11% Similarity=0.032 Sum_probs=109.8
Q ss_pred CCceeEEEEeC--CEEEEEecCCeEEEEeC-CCCCceeeEcCCCCCCccceeEEEeCCCCCeEEEEeecCCCccEEEEec
Q 002318 21 RGVITCMSAGN--DVIVLGTSKGWLIRHDF-GAGDSYDIDLSAGRPGEQSIHKVFVDPGGSHCIATIVGSGGAETFYTHA 97 (936)
Q Consensus 21 ~~~i~~l~v~~--n~l~l~~~~g~l~ridl-~~~~~~~~~l~~~~~~~~~i~~i~lDp~G~hlli~~~~~~~g~~~Y~~~ 97 (936)
.+.|+|++.+. +.++.|..+|.|..||+ ....+..+.-+ ...|..+-++|.|.++++++. +|....++.
T Consensus 32 ~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h-----~~~v~~~~~~~~~~~l~s~~~---dg~i~iwd~ 103 (369)
T 3zwl_B 32 ERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGERLGTLDGH-----TGTIWSIDVDCFTKYCVTGSA---DYSIKLWDV 103 (369)
T ss_dssp SSCEEEEEECTTSCEEEEEESSSCEEEEETTTCCEEEEECCC-----SSCEEEEEECTTSSEEEEEET---TTEEEEEET
T ss_pred eceEEEEEEcCCCCEEEEEeCCCEEEEEeCCCchhhhhhhhc-----CCcEEEEEEcCCCCEEEEEeC---CCeEEEEEC
Confidence 46799999975 58899999999999999 55544444433 468999999999999998887 899988887
Q ss_pred CCCCceeccCCCCceEEEEEecCCCCCCCCcceEEEEcCC-----CcEEEEEEecCCccc-------ceeeEEeeeCCCC
Q 002318 98 KWSKPRVLSKLKGLVVNAVAWNRQQITEASTKEIILGTDT-----GQLHEMAVDEKDKRE-------KYIKLLFELNELP 165 (936)
Q Consensus 98 ~~~k~k~L~klkg~~I~sVaw~~~~~~~~st~~iLiGt~~-----G~i~e~~i~~~~~~~-------~~~k~v~~l~~~~ 165 (936)
...+.....+ .+..|.+++|++. ...++.|+.+ |.|....+....... .....+ ......
T Consensus 104 ~~~~~~~~~~-~~~~v~~~~~~~~------~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 175 (369)
T 3zwl_B 104 SNGQCVATWK-SPVPVKRVEFSPC------GNYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKI-ITHEGL 175 (369)
T ss_dssp TTCCEEEEEE-CSSCEEEEEECTT------SSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEE-ECCTTC
T ss_pred CCCcEEEEee-cCCCeEEEEEccC------CCEEEEecCCccCCCCEEEEEEecCCccceeecccccceeeec-cCCcCc
Confidence 6655433333 4568999999942 2377888887 999988886542110 111111 111111
Q ss_pred CceeeEEEEeeccCCCceEEEEEECCCeEEEEec
Q 002318 166 EAFMGLQMETASLSNGTRYYVMAVTPTRLYSFTG 199 (936)
Q Consensus 166 ~~I~gi~~~~~~~~~~~~~~i~ast~~rly~f~~ 199 (936)
.+|+.+.|.. +.++++.++....++.|.-
T Consensus 176 ~~~~~~~~~~-----~~~~l~~~~~dg~i~i~d~ 204 (369)
T 3zwl_B 176 DAATVAGWST-----KGKYIIAGHKDGKISKYDV 204 (369)
T ss_dssp CCEEEEEECG-----GGCEEEEEETTSEEEEEET
T ss_pred cceeEEEEcC-----CCCEEEEEcCCCEEEEEEC
Confidence 2688888863 3357777777888887764
No 20
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=97.72 E-value=0.0023 Score=70.15 Aligned_cols=167 Identities=11% Similarity=0.085 Sum_probs=109.6
Q ss_pred CCceeEEEEe----CCEEEEEecCCeEEEEeC-CCCCceeeEcCCCCCCccceeEEEeCCC--CCeEEEEeecCCCccEE
Q 002318 21 RGVITCMSAG----NDVIVLGTSKGWLIRHDF-GAGDSYDIDLSAGRPGEQSIHKVFVDPG--GSHCIATIVGSGGAETF 93 (936)
Q Consensus 21 ~~~i~~l~v~----~n~l~l~~~~g~l~ridl-~~~~~~~~~l~~~~~~~~~i~~i~lDp~--G~hlli~~~~~~~g~~~ 93 (936)
.+.|++++.+ ++.++.|..+|.|..||+ .+.......+. .....|..+-..|. |..+++++. +|...
T Consensus 55 ~~~v~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~---~~~~~v~~~~~~~~~~~~~l~~~~~---d~~i~ 128 (379)
T 3jrp_A 55 EGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGRWSQIAVHA---VHSASVNSVQWAPHEYGPLLLVASS---DGKVS 128 (379)
T ss_dssp SSCEEEEEECCGGGCSEEEEEETTSCEEEEEEETTEEEEEEEEC---CCSSCEEEEEECCGGGCSEEEEEET---TSEEE
T ss_pred CCcEEEEEeCCCCCCCEEEEeccCCEEEEEEcCCCceeEeeeec---CCCcceEEEEeCCCCCCCEEEEecC---CCcEE
Confidence 4579999997 689999999999999999 43311111121 11468999999999 998888887 88887
Q ss_pred EEecCCCC---ceeccCCCCceEEEEEecCCCCC-------CCCcceEEEEcCCCcEEEEEEecCCcccceeeEEeeeCC
Q 002318 94 YTHAKWSK---PRVLSKLKGLVVNAVAWNRQQIT-------EASTKEIILGTDTGQLHEMAVDEKDKREKYIKLLFELNE 163 (936)
Q Consensus 94 Y~~~~~~k---~k~L~klkg~~I~sVaw~~~~~~-------~~st~~iLiGt~~G~i~e~~i~~~~~~~~~~k~v~~l~~ 163 (936)
.+.....+ ...+. -....|.+++|++.... ..+...++.|+.+|.|....+.... .....+..+..
T Consensus 129 v~d~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~---~~~~~~~~~~~ 204 (379)
T 3jrp_A 129 VVEFKENGTTSPIIID-AHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDA---QTYVLESTLEG 204 (379)
T ss_dssp EEECCTTSCCCEEEEE-CCTTCEEEEEECCCC----------CTTCEEEEEETTSCEEEEEEETTT---TEEEEEEEECC
T ss_pred EEecCCCCceeeEEec-CCCCceEEEEEcCccccccccccCCCCCCEEEEEeCCCeEEEEEecCCC---cceeeEEEEec
Confidence 77765542 12222 23458999999953100 0023478899999999988886542 12233334443
Q ss_pred CCCceeeEEEEeeccCCCceEEEEEECCCeEEEEec
Q 002318 164 LPEAFMGLQMETASLSNGTRYYVMAVTPTRLYSFTG 199 (936)
Q Consensus 164 ~~~~I~gi~~~~~~~~~~~~~~i~ast~~rly~f~~ 199 (936)
-.++|+++.|.... ...++++.++....++-|.-
T Consensus 205 h~~~v~~~~~sp~~--~~~~~l~s~~~dg~i~iwd~ 238 (379)
T 3jrp_A 205 HSDWVRDVAWSPTV--LLRSYLASVSQDRTCIIWTQ 238 (379)
T ss_dssp CSSCEEEEEECCCC--SSSEEEEEEETTSCEEEEEE
T ss_pred ccCcEeEEEECCCC--CCCCeEEEEeCCCEEEEEeC
Confidence 34679999997310 00367777777777776753
No 21
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=97.72 E-value=0.00093 Score=73.28 Aligned_cols=156 Identities=10% Similarity=0.106 Sum_probs=108.0
Q ss_pred CCceeEEEEeCC--EEEEEecCCeEEEEeC-CCC--CceeeEcCCCCCCccceeEEEeCCCCCeEEEEeecCCCccEEEE
Q 002318 21 RGVITCMSAGND--VIVLGTSKGWLIRHDF-GAG--DSYDIDLSAGRPGEQSIHKVFVDPGGSHCIATIVGSGGAETFYT 95 (936)
Q Consensus 21 ~~~i~~l~v~~n--~l~l~~~~g~l~ridl-~~~--~~~~~~l~~~~~~~~~i~~i~lDp~G~hlli~~~~~~~g~~~Y~ 95 (936)
.+.|+|++.+.+ .++.|..+|.|..+|+ ... .+..+.-+ ...|..+.++|.|..+++++. +|....+
T Consensus 8 ~~~i~~~~~s~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~h-----~~~v~~~~~~~~~~~l~~~~~---dg~i~vw 79 (372)
T 1k8k_C 8 VEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEH-----NGQVTGVDWAPDSNRIVTCGT---DRNAYVW 79 (372)
T ss_dssp SSCCCEEEECTTSSEEEEECSSSEEEEEEEETTEEEEEEEEECC-----SSCEEEEEEETTTTEEEEEET---TSCEEEE
T ss_pred CCCeEEEEECCCCCEEEEEeCCCEEEEEeCCCCcEEeeeeecCC-----CCcccEEEEeCCCCEEEEEcC---CCeEEEE
Confidence 357999999755 8899999999999999 443 34444433 468999999999999998887 8988877
Q ss_pred ecCCCCceeccCC--CCceEEEEEecCCCCCCCCcceEEEEcCCCcEEEEEEecCCcccceeeEEeeeCCCCCceeeEEE
Q 002318 96 HAKWSKPRVLSKL--KGLVVNAVAWNRQQITEASTKEIILGTDTGQLHEMAVDEKDKREKYIKLLFELNELPEAFMGLQM 173 (936)
Q Consensus 96 ~~~~~k~k~L~kl--kg~~I~sVaw~~~~~~~~st~~iLiGt~~G~i~e~~i~~~~~~~~~~k~v~~l~~~~~~I~gi~~ 173 (936)
+....+......+ .+..|.+++|++. ...++.|+.+|.|....+..... ....+.+ ..+ ...+|+++.|
T Consensus 80 d~~~~~~~~~~~~~~~~~~v~~~~~~~~------~~~l~~~~~d~~v~i~d~~~~~~-~~~~~~~-~~~-~~~~i~~~~~ 150 (372)
T 1k8k_C 80 TLKGRTWKPTLVILRINRAARCVRWAPN------EKKFAVGSGSRVISICYFEQEND-WWVCKHI-KKP-IRSTVLSLDW 150 (372)
T ss_dssp EEETTEEEEEEECCCCSSCEEEEEECTT------SSEEEEEETTSSEEEEEEETTTT-EEEEEEE-CTT-CCSCEEEEEE
T ss_pred ECCCCeeeeeEEeecCCCceeEEEECCC------CCEEEEEeCCCEEEEEEecCCCc-ceeeeee-ecc-cCCCeeEEEE
Confidence 7655442222111 3458999999942 24788999999998888875421 1112222 111 1367999999
Q ss_pred EeeccCCCceEEEEEECCCeEEEEe
Q 002318 174 ETASLSNGTRYYVMAVTPTRLYSFT 198 (936)
Q Consensus 174 ~~~~~~~~~~~~i~ast~~rly~f~ 198 (936)
.. +.++++.++....++-|.
T Consensus 151 ~~-----~~~~l~~~~~dg~i~~~d 170 (372)
T 1k8k_C 151 HP-----NSVLLAAGSCDFKCRIFS 170 (372)
T ss_dssp CT-----TSSEEEEEETTSCEEEEE
T ss_pred cC-----CCCEEEEEcCCCCEEEEE
Confidence 73 335777777777777775
No 22
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=97.68 E-value=0.0015 Score=71.18 Aligned_cols=152 Identities=11% Similarity=0.110 Sum_probs=106.8
Q ss_pred CCceeEEEEeCC--EEEEEecCCeEEEEeC-CCCCceeeEcCCCCCCccceeEEEeCCCCCeEEEEeecCCCccEEEEec
Q 002318 21 RGVITCMSAGND--VIVLGTSKGWLIRHDF-GAGDSYDIDLSAGRPGEQSIHKVFVDPGGSHCIATIVGSGGAETFYTHA 97 (936)
Q Consensus 21 ~~~i~~l~v~~n--~l~l~~~~g~l~ridl-~~~~~~~~~l~~~~~~~~~i~~i~lDp~G~hlli~~~~~~~g~~~Y~~~ 97 (936)
...|++++++.+ .++-|..+|+|..||+ .+..+..+..+ ...+..+-..|.|.+++.++. +|....+..
T Consensus 80 ~~~v~~~~~~~~~~~l~s~s~D~~i~lWd~~~~~~~~~~~~~-----~~~~~~~~~spdg~~l~~g~~---dg~v~i~~~ 151 (321)
T 3ow8_A 80 QLGVVSVDISHTLPIAASSSLDAHIRLWDLENGKQIKSIDAG-----PVDAWTLAFSPDSQYLATGTH---VGKVNIFGV 151 (321)
T ss_dssp SSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECC-----TTCCCCEEECTTSSEEEEECT---TSEEEEEET
T ss_pred CCCEEEEEECCCCCEEEEEeCCCcEEEEECCCCCEEEEEeCC-----CccEEEEEECCCCCEEEEEcC---CCcEEEEEc
Confidence 356889988765 6777888999999999 65555555443 346777889999999998887 888877776
Q ss_pred CCCCceeccCCCCceEEEEEecCCCCCCCCcceEEEEcCCCcEEEEEEecCCcccceeeEEeeeCCCCCceeeEEEEeec
Q 002318 98 KWSKPRVLSKLKGLVVNAVAWNRQQITEASTKEIILGTDTGQLHEMAVDEKDKREKYIKLLFELNELPEAFMGLQMETAS 177 (936)
Q Consensus 98 ~~~k~k~L~klkg~~I~sVaw~~~~~~~~st~~iLiGt~~G~i~e~~i~~~~~~~~~~k~v~~l~~~~~~I~gi~~~~~~ 177 (936)
...+........+..|.+++|+++ ...++.|+.+|.|....+..+ +.+..+..-..+|+++.|..
T Consensus 152 ~~~~~~~~~~~~~~~v~~~~~spd------g~~lasg~~dg~i~iwd~~~~-------~~~~~~~~h~~~v~~l~~sp-- 216 (321)
T 3ow8_A 152 ESGKKEYSLDTRGKFILSIAYSPD------GKYLASGAIDGIINIFDIATG-------KLLHTLEGHAMPIRSLTFSP-- 216 (321)
T ss_dssp TTCSEEEEEECSSSCEEEEEECTT------SSEEEEEETTSCEEEEETTTT-------EEEEEECCCSSCCCEEEECT--
T ss_pred CCCceeEEecCCCceEEEEEECCC------CCEEEEEcCCCeEEEEECCCC-------cEEEEEcccCCceeEEEEcC--
Confidence 555433322235678999999943 247888999999988766442 23334443346799999963
Q ss_pred cCCCceEEEEEECCCeEEEEe
Q 002318 178 LSNGTRYYVMAVTPTRLYSFT 198 (936)
Q Consensus 178 ~~~~~~~~i~ast~~rly~f~ 198 (936)
+.++++.++....+.-|.
T Consensus 217 ---d~~~l~s~s~dg~i~iwd 234 (321)
T 3ow8_A 217 ---DSQLLVTASDDGYIKIYD 234 (321)
T ss_dssp ---TSCEEEEECTTSCEEEEE
T ss_pred ---CCCEEEEEcCCCeEEEEE
Confidence 335677666667777674
No 23
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=97.67 E-value=0.0019 Score=70.31 Aligned_cols=149 Identities=9% Similarity=0.093 Sum_probs=104.9
Q ss_pred CceeEEEEeC--CEEEEEecCCeEEEEeC-CCCCceeeEcCCCCCCccceeEEEeCCCCCeEEEEeecCCCccEEEEecC
Q 002318 22 GVITCMSAGN--DVIVLGTSKGWLIRHDF-GAGDSYDIDLSAGRPGEQSIHKVFVDPGGSHCIATIVGSGGAETFYTHAK 98 (936)
Q Consensus 22 ~~i~~l~v~~--n~l~l~~~~g~l~ridl-~~~~~~~~~l~~~~~~~~~i~~i~lDp~G~hlli~~~~~~~g~~~Y~~~~ 98 (936)
..|++++.+. +.++.|..+|.|..+|+ .+..+..+.-+ ...|..+-.+|.|..++.++. +|....++..
T Consensus 165 ~~v~~~~~spdg~~lasg~~dg~i~iwd~~~~~~~~~~~~h-----~~~v~~l~~spd~~~l~s~s~---dg~i~iwd~~ 236 (321)
T 3ow8_A 165 KFILSIAYSPDGKYLASGAIDGIINIFDIATGKLLHTLEGH-----AMPIRSLTFSPDSQLLVTASD---DGYIKIYDVQ 236 (321)
T ss_dssp SCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCC-----SSCCCEEEECTTSCEEEEECT---TSCEEEEETT
T ss_pred ceEEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEccc-----CCceeEEEEcCCCCEEEEEcC---CCeEEEEECC
Confidence 4588888875 48999999999999999 54444444333 367899999999998888877 8988877765
Q ss_pred CCCceeccCCCC--ceEEEEEecCCCCCCCCcceEEEEcCCCcEEEEEEecCCcccceeeEEeeeCCCCCceeeEEEEee
Q 002318 99 WSKPRVLSKLKG--LVVNAVAWNRQQITEASTKEIILGTDTGQLHEMAVDEKDKREKYIKLLFELNELPEAFMGLQMETA 176 (936)
Q Consensus 99 ~~k~k~L~klkg--~~I~sVaw~~~~~~~~st~~iLiGt~~G~i~e~~i~~~~~~~~~~k~v~~l~~~~~~I~gi~~~~~ 176 (936)
..+. +..+.| ..|.+++|++. ...++.|+.+|.|....+..+ +.+..+.+-.++|.++.|..
T Consensus 237 ~~~~--~~~~~~h~~~v~~~~~sp~------~~~l~s~s~D~~v~iwd~~~~-------~~~~~~~~h~~~v~~v~~s~- 300 (321)
T 3ow8_A 237 HANL--AGTLSGHASWVLNVAFCPD------DTHFVSSSSDKSVKVWDVGTR-------TCVHTFFDHQDQVWGVKYNG- 300 (321)
T ss_dssp TCCE--EEEECCCSSCEEEEEECTT------SSEEEEEETTSCEEEEETTTT-------EEEEEECCCSSCEEEEEECT-
T ss_pred Ccce--eEEEcCCCCceEEEEECCC------CCEEEEEeCCCcEEEEeCCCC-------EEEEEEcCCCCcEEEEEECC-
Confidence 5432 223344 46999999953 236888999999888766542 22333433236799999962
Q ss_pred ccCCCceEEEEEECCCeEEEEe
Q 002318 177 SLSNGTRYYVMAVTPTRLYSFT 198 (936)
Q Consensus 177 ~~~~~~~~~i~ast~~rly~f~ 198 (936)
+.+.++-++....+.-|.
T Consensus 301 ----~g~~l~s~~~d~~i~vwd 318 (321)
T 3ow8_A 301 ----NGSKIVSVGDDQEIHIYD 318 (321)
T ss_dssp ----TSSEEEEEETTCCEEEEE
T ss_pred ----CCCEEEEEeCCCeEEEEe
Confidence 335677767777777675
No 24
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=97.66 E-value=0.049 Score=61.51 Aligned_cols=146 Identities=10% Similarity=0.048 Sum_probs=99.9
Q ss_pred CCceeEEEEeCCEEEEEecCCeEEEEeC-CCCCceeeEcCCCCCCccceeEEEeCCCCCeEEEEeecCCCccEEEEecCC
Q 002318 21 RGVITCMSAGNDVIVLGTSKGWLIRHDF-GAGDSYDIDLSAGRPGEQSIHKVFVDPGGSHCIATIVGSGGAETFYTHAKW 99 (936)
Q Consensus 21 ~~~i~~l~v~~n~l~l~~~~g~l~ridl-~~~~~~~~~l~~~~~~~~~i~~i~lDp~G~hlli~~~~~~~g~~~Y~~~~~ 99 (936)
.+.|++++.+++.++.|..+|+|..+|+ .+..+..+.-+ ...|..+..+ |..+++++. +|....++...
T Consensus 159 ~~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~h-----~~~v~~~~~~--~~~l~s~s~---dg~i~~wd~~~ 228 (445)
T 2ovr_B 159 TGGVWSSQMRDNIIISGSTDRTLKVWNAETGECIHTLYGH-----TSTVRCMHLH--EKRVVSGSR---DATLRVWDIET 228 (445)
T ss_dssp SSCEEEEEEETTEEEEEETTSCEEEEETTTTEEEEEECCC-----SSCEEEEEEE--TTEEEEEET---TSEEEEEESSS
T ss_pred CCCEEEEEecCCEEEEEeCCCeEEEEECCcCcEEEEECCC-----CCcEEEEEec--CCEEEEEeC---CCEEEEEECCC
Confidence 4568899999999999999999999998 54444444333 3567777775 566777777 88888887665
Q ss_pred CCceeccCCCCceEEEEEecCCCCCCCCcceEEEEcCCCcEEEEEEecCCcccceeeEEeeeCCCCCceeeEEEEeeccC
Q 002318 100 SKPRVLSKLKGLVVNAVAWNRQQITEASTKEIILGTDTGQLHEMAVDEKDKREKYIKLLFELNELPEAFMGLQMETASLS 179 (936)
Q Consensus 100 ~k~k~L~klkg~~I~sVaw~~~~~~~~st~~iLiGt~~G~i~e~~i~~~~~~~~~~k~v~~l~~~~~~I~gi~~~~~~~~ 179 (936)
.+.....+.....|.+++|+. ..++.|+.+|.|....+... +.+..+....++|+++.+.
T Consensus 229 ~~~~~~~~~~~~~v~~~~~~~--------~~l~~~~~dg~i~iwd~~~~-------~~~~~~~~~~~~v~~~~~~----- 288 (445)
T 2ovr_B 229 GQCLHVLMGHVAAVRCVQYDG--------RRVVSGAYDFMVKVWDPETE-------TCLHTLQGHTNRVYSLQFD----- 288 (445)
T ss_dssp CCEEEEEECCSSCEEEEEECS--------SCEEEEETTSCEEEEEGGGT-------EEEEEECCCSSCEEEEEEC-----
T ss_pred CcEEEEEcCCcccEEEEEECC--------CEEEEEcCCCEEEEEECCCC-------cEeEEecCCCCceEEEEEC-----
Confidence 543222222345899999951 26899999999988766542 2233343334679998883
Q ss_pred CCceEEEEEECCCeEEEEe
Q 002318 180 NGTRYYVMAVTPTRLYSFT 198 (936)
Q Consensus 180 ~~~~~~i~ast~~rly~f~ 198 (936)
+ +.++.++....++-|.
T Consensus 289 ~--~~l~~~~~d~~i~i~d 305 (445)
T 2ovr_B 289 G--IHVVSGSLDTSIRVWD 305 (445)
T ss_dssp S--SEEEEEETTSCEEEEE
T ss_pred C--CEEEEEeCCCeEEEEE
Confidence 2 5677777777787775
No 25
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=97.66 E-value=0.0016 Score=71.37 Aligned_cols=151 Identities=11% Similarity=0.028 Sum_probs=104.2
Q ss_pred CCceeEEEEeCC--EEEEEecCCeEEEEeC-CCCCceeeEcCCCCCCccceeEEEeCCCCCeEEEEeecCCCccEEEEec
Q 002318 21 RGVITCMSAGND--VIVLGTSKGWLIRHDF-GAGDSYDIDLSAGRPGEQSIHKVFVDPGGSHCIATIVGSGGAETFYTHA 97 (936)
Q Consensus 21 ~~~i~~l~v~~n--~l~l~~~~g~l~ridl-~~~~~~~~~l~~~~~~~~~i~~i~lDp~G~hlli~~~~~~~g~~~Y~~~ 97 (936)
.+.|++++++++ .++.|..+|+|..||+ .+..+..+.-+ ...|..+-++|.|..++.++. +|....+..
T Consensus 184 ~~~v~~~~~~~~~~~l~sg~~d~~v~~wd~~~~~~~~~~~~h-----~~~v~~v~~~p~~~~l~s~s~---d~~v~iwd~ 255 (340)
T 1got_B 184 TGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGH-----ESDINAICFFPNGNAFATGSD---DATCRLFDL 255 (340)
T ss_dssp SSCEEEEEECTTSSEEEEEETTSCEEEEETTTCSEEEEECCC-----SSCEEEEEECTTSSEEEEEET---TSCEEEEET
T ss_pred CCceEEEEECCCCCEEEEEeCCCcEEEEECCCCeeEEEEcCC-----cCCEEEEEEcCCCCEEEEEcC---CCcEEEEEC
Confidence 456899999754 8888999999999999 54444444333 467999999999999998887 899988876
Q ss_pred CCCCceeccCCCC--ceEEEEEecCCCCCCCCcceEEEEcCCCcEEEEEEecCCcccceeeEEeeeCCCCCceeeEEEEe
Q 002318 98 KWSKPRVLSKLKG--LVVNAVAWNRQQITEASTKEIILGTDTGQLHEMAVDEKDKREKYIKLLFELNELPEAFMGLQMET 175 (936)
Q Consensus 98 ~~~k~k~L~klkg--~~I~sVaw~~~~~~~~st~~iLiGt~~G~i~e~~i~~~~~~~~~~k~v~~l~~~~~~I~gi~~~~ 175 (936)
...+........+ ..|++++|++. ..-++.|+.+|.|....+... +.+..+.+-.++|+++.|..
T Consensus 256 ~~~~~~~~~~~~~~~~~v~~~~~s~~------g~~l~~g~~d~~i~vwd~~~~-------~~~~~~~~h~~~v~~~~~s~ 322 (340)
T 1got_B 256 RADQELMTYSHDNIICGITSVSFSKS------GRLLLAGYDDFNCNVWDALKA-------DRAGVLAGHDNRVSCLGVTD 322 (340)
T ss_dssp TTTEEEEEECCTTCCSCEEEEEECTT------SSEEEEEETTSEEEEEETTTC-------CEEEEEECCSSCEEEEEECT
T ss_pred CCCcEEEEEccCCcccceEEEEECCC------CCEEEEECCCCeEEEEEcccC-------cEeeEeecCCCcEEEEEEcC
Confidence 5543222111122 46999999943 347888999999887765432 12223333236799999862
Q ss_pred eccCCCceEEEEEECCCeEEEE
Q 002318 176 ASLSNGTRYYVMAVTPTRLYSF 197 (936)
Q Consensus 176 ~~~~~~~~~~i~ast~~rly~f 197 (936)
+.++++-++....++-|
T Consensus 323 -----dg~~l~s~s~D~~i~iW 339 (340)
T 1got_B 323 -----DGMAVATGSWDSFLKIW 339 (340)
T ss_dssp -----TSSCEEEEETTSCEEEE
T ss_pred -----CCCEEEEEcCCccEEec
Confidence 23567776767777766
No 26
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=97.63 E-value=0.039 Score=58.24 Aligned_cols=149 Identities=7% Similarity=-0.049 Sum_probs=102.6
Q ss_pred CCceeEEEEe-CCEEEEEecCCeEEEEeC-CCCCceeeEcCCCCCCccceeEEEeCCCCCeEEEEeecCCCccEEEEecC
Q 002318 21 RGVITCMSAG-NDVIVLGTSKGWLIRHDF-GAGDSYDIDLSAGRPGEQSIHKVFVDPGGSHCIATIVGSGGAETFYTHAK 98 (936)
Q Consensus 21 ~~~i~~l~v~-~n~l~l~~~~g~l~ridl-~~~~~~~~~l~~~~~~~~~i~~i~lDp~G~hlli~~~~~~~g~~~Y~~~~ 98 (936)
.+.|+|++.. ++.++.|..+|.|..+|+ .......+..+ ...|..+-.+|.|.++++++. +|....+...
T Consensus 18 ~~~v~~~~~~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~-----~~~v~~~~~~~~~~~l~~~~~---dg~i~~~~~~ 89 (313)
T 3odt_A 18 DQDVRDVVAVDDSKVASVSRDGTVRLWSKDDQWLGTVVYTG-----QGFLNSVCYDSEKELLLFGGK---DTMINGVPLF 89 (313)
T ss_dssp SSCEEEEEEEETTEEEEEETTSEEEEEEESSSEEEEEEEEC-----SSCEEEEEEETTTTEEEEEET---TSCEEEEETT
T ss_pred CCCcEEEEecCCCEEEEEEcCCcEEEEECCCCEEEEEeecC-----CccEEEEEECCCCCEEEEecC---CCeEEEEEee
Confidence 4578998874 558999999999999999 44334444443 468999999999999999888 8988766643
Q ss_pred CCC-ceeccCC--CCceEEEEEecCCCCCCCCcceEEEEcCCCcEEEEEEecCCcccceeeEEeeeCCCCCceeeEEEEe
Q 002318 99 WSK-PRVLSKL--KGLVVNAVAWNRQQITEASTKEIILGTDTGQLHEMAVDEKDKREKYIKLLFELNELPEAFMGLQMET 175 (936)
Q Consensus 99 ~~k-~k~L~kl--kg~~I~sVaw~~~~~~~~st~~iLiGt~~G~i~e~~i~~~~~~~~~~k~v~~l~~~~~~I~gi~~~~ 175 (936)
... .+.+..+ ....|.+++|+. ..++.|+.+|.|.... .. + ....+... ..+|.++.+..
T Consensus 90 ~~~~~~~~~~~~~~~~~i~~~~~~~--------~~l~~~~~d~~i~~~d--~~----~-~~~~~~~~--~~~v~~~~~~~ 152 (313)
T 3odt_A 90 ATSGEDPLYTLIGHQGNVCSLSFQD--------GVVISGSWDKTAKVWK--EG----S-LVYNLQAH--NASVWDAKVVS 152 (313)
T ss_dssp CCTTSCC-CEECCCSSCEEEEEEET--------TEEEEEETTSEEEEEE--TT----E-EEEEEECC--SSCEEEEEEEE
T ss_pred ecCCCCcccchhhcccCEEEEEecC--------CEEEEEeCCCCEEEEc--CC----c-EEEecccC--CCceeEEEEcc
Confidence 321 2222222 345899999962 2789999999988775 21 1 12222333 36799999874
Q ss_pred eccCCCceEEEEEECCCeEEEEe
Q 002318 176 ASLSNGTRYYVMAVTPTRLYSFT 198 (936)
Q Consensus 176 ~~~~~~~~~~i~ast~~rly~f~ 198 (936)
. +.+.++.++....++.|.
T Consensus 153 ~----~~~~l~~~~~d~~i~i~d 171 (313)
T 3odt_A 153 F----SENKFLTASADKTIKLWQ 171 (313)
T ss_dssp T----TTTEEEEEETTSCEEEEE
T ss_pred C----CCCEEEEEECCCCEEEEe
Confidence 2 235777777788888776
No 27
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=97.62 E-value=0.004 Score=66.72 Aligned_cols=169 Identities=15% Similarity=0.136 Sum_probs=113.2
Q ss_pred CCCceeEEEEe----CCEEEEEecCCeEEEEeC-CCCCceeeEcCCC--------CCCccceeEEEeCCC---CCeEEEE
Q 002318 20 GRGVITCMSAG----NDVIVLGTSKGWLIRHDF-GAGDSYDIDLSAG--------RPGEQSIHKVFVDPG---GSHCIAT 83 (936)
Q Consensus 20 ~~~~i~~l~v~----~n~l~l~~~~g~l~ridl-~~~~~~~~~l~~~--------~~~~~~i~~i~lDp~---G~hlli~ 83 (936)
..+.|++++.+ ++.++.|..+|.|..+|+ .+..+..+.++.. ......+..+-..|. |..++++
T Consensus 109 ~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~ 188 (351)
T 3f3f_A 109 SKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALEPSDLRSWTLTSEMKVLSIPPANHLQSDFCLSWCPSRFSPEKLAVS 188 (351)
T ss_dssp CSSCEEEEEECCGGGCSEEEEEETTCEEEEEECSSTTCTTCCEEEEEEESCSCCCSSCSCCCEEEEECCCSSSCCEEEEE
T ss_pred cCCceeEEEEcCCCCCcEEEEecCCCcEEEecCCChHHhccccccccccccccccCCcccceeEEEeccCCCCCcEEEEe
Confidence 34679999999 558999999999999999 6665544332110 112357888888887 8888888
Q ss_pred eecCCCccEEEEecCCCCceeccCCCC--ceEEEEEecCCCCCCCCcceEEEEcCCCcEEEEEEecCCc-----------
Q 002318 84 IVGSGGAETFYTHAKWSKPRVLSKLKG--LVVNAVAWNRQQITEASTKEIILGTDTGQLHEMAVDEKDK----------- 150 (936)
Q Consensus 84 ~~~~~~g~~~Y~~~~~~k~k~L~klkg--~~I~sVaw~~~~~~~~st~~iLiGt~~G~i~e~~i~~~~~----------- 150 (936)
+. +|...|......+.+.+..+.+ ..|++++|++.... ...-++.|+.+|.|....+.....
T Consensus 189 ~~---~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~p~~~~--~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~ 263 (351)
T 3f3f_A 189 AL---EQAIIYQRGKDGKLHVAAKLPGHKSLIRSISWAPSIGR--WYQLIATGCKDGRIRIFKITEKLSPLASEESLTNS 263 (351)
T ss_dssp ET---TEEEEEEECTTSCEEEEEECCCCCSCEEEEEECCCSSC--SSEEEEEEETTSCEEEEEEEECC------------
T ss_pred cC---CCcEEEEccCCCceeeeeecCCCCcceeEEEECCCCCC--cceEEEEEcCCCeEEEEeCCCCcCccccCCcccce
Confidence 87 7888777776666555555554 48999999953210 114688899999999888764310
Q ss_pred ----------------------------ccceeeEEeeeCCCCCceeeEEEEeeccCCCceEEEEEECCCeEEEEe
Q 002318 151 ----------------------------REKYIKLLFELNELPEAFMGLQMETASLSNGTRYYVMAVTPTRLYSFT 198 (936)
Q Consensus 151 ----------------------------~~~~~k~v~~l~~~~~~I~gi~~~~~~~~~~~~~~i~ast~~rly~f~ 198 (936)
.....+.+..+..-.++|+++.|.. +.++++.++....+.-|.
T Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~-----~~~~l~s~~~dg~v~iw~ 334 (351)
T 3f3f_A 264 NMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVELLSEHDDHNGEVWSVSWNL-----TGTILSSAGDDGKVRLWK 334 (351)
T ss_dssp ---------------------------CCSEEEEEEEEECTTSSCEEEEEECS-----SSCCEEEEETTSCEEEEE
T ss_pred eccCCCcccccccccccccccceeeeecccccccEEEEEecccccEEEEEEcC-----CCCEEEEecCCCcEEEEe
Confidence 0011234444443346799999863 235777777777777674
No 28
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=97.60 E-value=0.0017 Score=72.27 Aligned_cols=157 Identities=13% Similarity=0.060 Sum_probs=106.0
Q ss_pred CCceeEEEEe--CCEEEEEecCCeEEEEeC-CCCCceeeEcCCCCCCccceeEEEeCCCCCeEEEEeecCCCccEEEEec
Q 002318 21 RGVITCMSAG--NDVIVLGTSKGWLIRHDF-GAGDSYDIDLSAGRPGEQSIHKVFVDPGGSHCIATIVGSGGAETFYTHA 97 (936)
Q Consensus 21 ~~~i~~l~v~--~n~l~l~~~~g~l~ridl-~~~~~~~~~l~~~~~~~~~i~~i~lDp~G~hlli~~~~~~~g~~~Y~~~ 97 (936)
.+.|++++.+ ++.++.|..+|.|..+|+ ....+..+.-+ ...|..+...|.| .+++++. +|..+.++.
T Consensus 247 ~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~-----~~~i~~~~~~~~~-~l~~~~~---d~~i~i~d~ 317 (425)
T 1r5m_A 247 HGPISVLEFNDTNKLLLSASDDGTLRIWHGGNGNSQNCFYGH-----SQSIVSASWVGDD-KVISCSM---DGSVRLWSL 317 (425)
T ss_dssp SSCEEEEEEETTTTEEEEEETTSCEEEECSSSBSCSEEECCC-----SSCEEEEEEETTT-EEEEEET---TSEEEEEET
T ss_pred CCceEEEEECCCCCEEEEEcCCCEEEEEECCCCccceEecCC-----CccEEEEEECCCC-EEEEEeC---CCcEEEEEC
Confidence 4568999997 457999999999999999 55555544333 3679999999999 7777776 788888876
Q ss_pred CCCCceeccCCCCceEEEEEecCCCCCCCCcceEEEEcCCCcEEEEEEecCCccc-------------ceeeEEeeeCCC
Q 002318 98 KWSKPRVLSKLKGLVVNAVAWNRQQITEASTKEIILGTDTGQLHEMAVDEKDKRE-------------KYIKLLFELNEL 164 (936)
Q Consensus 98 ~~~k~k~L~klkg~~I~sVaw~~~~~~~~st~~iLiGt~~G~i~e~~i~~~~~~~-------------~~~k~v~~l~~~ 164 (936)
...+........+..|.+++|++. ..-++.|+.+|.|....+....... ...+.+..+...
T Consensus 318 ~~~~~~~~~~~~~~~i~~~~~s~~------~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 391 (425)
T 1r5m_A 318 KQNTLLALSIVDGVPIFAGRISQD------GQKYAVAFMDGQVNVYDLKKLNSKSRSLYGNRDGILNPLPIPLYASYQSS 391 (425)
T ss_dssp TTTEEEEEEECTTCCEEEEEECTT------SSEEEEEETTSCEEEEECHHHHC--------------CEECCEEEEECCT
T ss_pred CCCcEeEecccCCccEEEEEEcCC------CCEEEEEECCCeEEEEECCCCccceeeeecccccccCcccchhhhhhcCc
Confidence 555433322234568999999942 2378889999999988876431000 001133344432
Q ss_pred CC--ceeeEEEEeeccCCCceEEEEEECCCeEEEE
Q 002318 165 PE--AFMGLQMETASLSNGTRYYVMAVTPTRLYSF 197 (936)
Q Consensus 165 ~~--~I~gi~~~~~~~~~~~~~~i~ast~~rly~f 197 (936)
.. +|+++.|.. +.++++.++....++-|
T Consensus 392 ~~~~~v~~~~~s~-----~~~~l~~~~~dg~i~iw 421 (425)
T 1r5m_A 392 QDNDYIFDLSWNC-----AGNKISVAYSLQEGSVV 421 (425)
T ss_dssp TCCCCEEEEEECT-----TSSEEEEEESSSCCEEE
T ss_pred ccCCceEEEEccC-----CCceEEEEecCceEEEE
Confidence 22 799999963 33577777777666655
No 29
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=97.59 E-value=0.0036 Score=68.45 Aligned_cols=163 Identities=10% Similarity=0.004 Sum_probs=108.9
Q ss_pred CCCceeEEEEe--CCEEEEEecCCeEEEEeC-CCCCceeeEcCCCCCCccceeEEEeCCCCCeEEEEeecCCCccEEEEe
Q 002318 20 GRGVITCMSAG--NDVIVLGTSKGWLIRHDF-GAGDSYDIDLSAGRPGEQSIHKVFVDPGGSHCIATIVGSGGAETFYTH 96 (936)
Q Consensus 20 ~~~~i~~l~v~--~n~l~l~~~~g~l~ridl-~~~~~~~~~l~~~~~~~~~i~~i~lDp~G~hlli~~~~~~~g~~~Y~~ 96 (936)
..+.|++++.+ ++.++.|..+|.|..+|+ .......+.+.. ....|..+..+|.|..+++++. +|..+.+.
T Consensus 51 h~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~---~~~~v~~~~~~~~~~~l~~~~~---d~~v~i~d 124 (372)
T 1k8k_C 51 HNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTWKPTLVILR---INRAARCVRWAPNEKKFAVGSG---SRVISICY 124 (372)
T ss_dssp CSSCEEEEEEETTTTEEEEEETTSCEEEEEEETTEEEEEEECCC---CSSCEEEEEECTTSSEEEEEET---TSSEEEEE
T ss_pred CCCcccEEEEeCCCCEEEEEcCCCeEEEEECCCCeeeeeEEeec---CCCceeEEEECCCCCEEEEEeC---CCEEEEEE
Confidence 44679999998 668999999999999999 433222333221 1467999999999999999887 88887766
Q ss_pred cCCCC----ceeccCCCCceEEEEEecCCCCCCCCcceEEEEcCCCcEEEEEEecCCcc-----------cceeeEEeee
Q 002318 97 AKWSK----PRVLSKLKGLVVNAVAWNRQQITEASTKEIILGTDTGQLHEMAVDEKDKR-----------EKYIKLLFEL 161 (936)
Q Consensus 97 ~~~~k----~k~L~klkg~~I~sVaw~~~~~~~~st~~iLiGt~~G~i~e~~i~~~~~~-----------~~~~k~v~~l 161 (936)
....+ .+.+..-....|.+++|++. ...++.|+.+|.|....+...... ...-+.+..+
T Consensus 125 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~------~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (372)
T 1k8k_C 125 FEQENDWWVCKHIKKPIRSTVLSLDWHPN------SVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFES 198 (372)
T ss_dssp EETTTTEEEEEEECTTCCSCEEEEEECTT------SSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEEC
T ss_pred ecCCCcceeeeeeecccCCCeeEEEEcCC------CCEEEEEcCCCCEEEEEcccccccccccccccccccchhhheEec
Confidence 54443 22332223468999999942 247889999999988876421000 0011233334
Q ss_pred CCCCCceeeEEEEeeccCCCceEEEEEECCCeEEEEec
Q 002318 162 NELPEAFMGLQMETASLSNGTRYYVMAVTPTRLYSFTG 199 (936)
Q Consensus 162 ~~~~~~I~gi~~~~~~~~~~~~~~i~ast~~rly~f~~ 199 (936)
....++|+++.|.. +.++++.++....++-|.-
T Consensus 199 ~~~~~~v~~~~~~~-----~~~~l~~~~~d~~i~i~d~ 231 (372)
T 1k8k_C 199 SSSCGWVHGVCFSA-----NGSRVAWVSHDSTVCLADA 231 (372)
T ss_dssp CCCSSCEEEEEECS-----SSSEEEEEETTTEEEEEEG
T ss_pred CCCCCeEEEEEECC-----CCCEEEEEeCCCEEEEEEC
Confidence 33346799999963 2357777777888887753
No 30
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=97.59 E-value=0.0022 Score=71.95 Aligned_cols=152 Identities=16% Similarity=0.165 Sum_probs=104.8
Q ss_pred CCCceeEEEEeCCEEEEEecCCeEEEEeC-CCCCc-eeeEcCCCCCCccceeEEEeCCCCCeEEEEeecCCCccEEEEec
Q 002318 20 GRGVITCMSAGNDVIVLGTSKGWLIRHDF-GAGDS-YDIDLSAGRPGEQSIHKVFVDPGGSHCIATIVGSGGAETFYTHA 97 (936)
Q Consensus 20 ~~~~i~~l~v~~n~l~l~~~~g~l~ridl-~~~~~-~~~~l~~~~~~~~~i~~i~lDp~G~hlli~~~~~~~g~~~Y~~~ 97 (936)
..+.|++++..++.++.|..+|.|..+|+ ..... ..+.-+ ...|..+..+|.|.++++++. +|....+..
T Consensus 175 ~~~~v~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~-----~~~v~~~~~~~~~~~l~s~~~---d~~v~iwd~ 246 (401)
T 4aez_A 175 HQARVGCLSWNRHVLSSGSRSGAIHHHDVRIANHQIGTLQGH-----SSEVCGLAWRSDGLQLASGGN---DNVVQIWDA 246 (401)
T ss_dssp CSSCEEEEEEETTEEEEEETTSEEEEEETTSSSCEEEEEECC-----SSCEEEEEECTTSSEEEEEET---TSCEEEEET
T ss_pred CCCceEEEEECCCEEEEEcCCCCEEEEecccCcceeeEEcCC-----CCCeeEEEEcCCCCEEEEEeC---CCeEEEccC
Confidence 34579999999999999999999999999 34432 233322 468999999999999999988 899988887
Q ss_pred CCCCceeccCCCCceEEEEEecCCCCCCCCcceEEE---EcCCCcEEEEEEecCCcccceeeEEeeeCCCCCceeeEEEE
Q 002318 98 KWSKPRVLSKLKGLVVNAVAWNRQQITEASTKEIIL---GTDTGQLHEMAVDEKDKREKYIKLLFELNELPEAFMGLQME 174 (936)
Q Consensus 98 ~~~k~k~L~klkg~~I~sVaw~~~~~~~~st~~iLi---Gt~~G~i~e~~i~~~~~~~~~~k~v~~l~~~~~~I~gi~~~ 174 (936)
...+......-....|++++|++.. ..+++ |+.+|.|....+... +..+. +.. +++|+++.|.
T Consensus 247 ~~~~~~~~~~~~~~~v~~~~~~p~~------~~ll~~~~gs~d~~i~i~d~~~~----~~~~~-~~~---~~~v~~~~~s 312 (401)
T 4aez_A 247 RSSIPKFTKTNHNAAVKAVAWCPWQ------SNLLATGGGTMDKQIHFWNAATG----ARVNT-VDA---GSQVTSLIWS 312 (401)
T ss_dssp TCSSEEEEECCCSSCCCEEEECTTS------TTEEEEECCTTTCEEEEEETTTC----CEEEE-EEC---SSCEEEEEEC
T ss_pred CCCCccEEecCCcceEEEEEECCCC------CCEEEEecCCCCCEEEEEECCCC----CEEEE-EeC---CCcEEEEEEC
Confidence 6654332222234689999999532 24454 457999988876543 12222 232 2679999997
Q ss_pred eeccCCCceEEEEEE--CCCeEEEEe
Q 002318 175 TASLSNGTRYYVMAV--TPTRLYSFT 198 (936)
Q Consensus 175 ~~~~~~~~~~~i~as--t~~rly~f~ 198 (936)
. +.+.++.++ ....++-|.
T Consensus 313 ~-----~~~~l~~~~g~~dg~i~v~~ 333 (401)
T 4aez_A 313 P-----HSKEIMSTHGFPDNNLSIWS 333 (401)
T ss_dssp S-----SSSEEEEEECTTTCEEEEEE
T ss_pred C-----CCCeEEEEeecCCCcEEEEe
Confidence 3 335666655 466677664
No 31
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=97.58 E-value=0.0049 Score=66.09 Aligned_cols=152 Identities=13% Similarity=0.099 Sum_probs=106.7
Q ss_pred CCceeEEEEeC--CEEEEEecCCeEEEEeC-CCCCceeeEcCCCCCCccceeEEEeCCCCCeEEEEeecCCCccEEEEec
Q 002318 21 RGVITCMSAGN--DVIVLGTSKGWLIRHDF-GAGDSYDIDLSAGRPGEQSIHKVFVDPGGSHCIATIVGSGGAETFYTHA 97 (936)
Q Consensus 21 ~~~i~~l~v~~--n~l~l~~~~g~l~ridl-~~~~~~~~~l~~~~~~~~~i~~i~lDp~G~hlli~~~~~~~g~~~Y~~~ 97 (936)
...|++++.+. +.++.|..+|.|..+|+ .+..+..+.-+ ...|..+..+|.|..++.++. +|....++.
T Consensus 65 ~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~-----~~~v~~~~~~~~~~~l~s~~~---d~~i~iwd~ 136 (312)
T 4ery_A 65 KLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGH-----SNYVFCCNFNPQSNLIVSGSF---DESVRIWDV 136 (312)
T ss_dssp SSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECC-----SSCEEEEEECSSSSEEEEEET---TSCEEEEET
T ss_pred CCceEEEEEcCCCCEEEEECCCCEEEEEECCCCcEEEEEcCC-----CCCEEEEEEcCCCCEEEEEeC---CCcEEEEEC
Confidence 45689999875 58899999999999999 55544445444 467899999999999998887 899988887
Q ss_pred CCCCc-eeccCCCCceEEEEEecCCCCCCCCcceEEEEcCCCcEEEEEEecCCcccceeeEEeeeCCCCCceeeEEEEee
Q 002318 98 KWSKP-RVLSKLKGLVVNAVAWNRQQITEASTKEIILGTDTGQLHEMAVDEKDKREKYIKLLFELNELPEAFMGLQMETA 176 (936)
Q Consensus 98 ~~~k~-k~L~klkg~~I~sVaw~~~~~~~~st~~iLiGt~~G~i~e~~i~~~~~~~~~~k~v~~l~~~~~~I~gi~~~~~ 176 (936)
...+. +.+.. ....|.+++|++. ...++.|+.+|.|....+... +.++.+..-. ..+|..+.|..
T Consensus 137 ~~~~~~~~~~~-~~~~v~~~~~~~~------~~~l~~~~~d~~i~~wd~~~~----~~~~~~~~~~--~~~~~~~~~~~- 202 (312)
T 4ery_A 137 KTGKCLKTLPA-HSDPVSAVHFNRD------GSLIVSSSYDGLCRIWDTASG----QCLKTLIDDD--NPPVSFVKFSP- 202 (312)
T ss_dssp TTCCEEEEECC-CSSCEEEEEECTT------SSEEEEEETTSCEEEEETTTC----CEEEEECCSS--CCCEEEEEECT-
T ss_pred CCCEEEEEecC-CCCcEEEEEEcCC------CCEEEEEeCCCcEEEEECCCC----ceeeEEeccC--CCceEEEEECC-
Confidence 65543 33322 3458999999842 237888999999988766442 1223322112 25688888862
Q ss_pred ccCCCceEEEEEECCCeEEEEe
Q 002318 177 SLSNGTRYYVMAVTPTRLYSFT 198 (936)
Q Consensus 177 ~~~~~~~~~i~ast~~rly~f~ 198 (936)
+.++++.++....+.-|.
T Consensus 203 ----~~~~l~~~~~d~~i~iwd 220 (312)
T 4ery_A 203 ----NGKYILAATLDNTLKLWD 220 (312)
T ss_dssp ----TSSEEEEEETTTEEEEEE
T ss_pred ----CCCEEEEEcCCCeEEEEE
Confidence 336777777777777674
No 32
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=97.57 E-value=0.0023 Score=69.65 Aligned_cols=153 Identities=14% Similarity=0.210 Sum_probs=104.9
Q ss_pred CCceeEEEEe--CCEEEEEecCCeEEEEeC-CCCCceeeEcCCCCCCccceeEEEeCCCCCeEEEEeecCCC-----ccE
Q 002318 21 RGVITCMSAG--NDVIVLGTSKGWLIRHDF-GAGDSYDIDLSAGRPGEQSIHKVFVDPGGSHCIATIVGSGG-----AET 92 (936)
Q Consensus 21 ~~~i~~l~v~--~n~l~l~~~~g~l~ridl-~~~~~~~~~l~~~~~~~~~i~~i~lDp~G~hlli~~~~~~~-----g~~ 92 (936)
.+.|++++.+ ++.++.+..+|.|..+|+ .+..+..+.. ...|..+-.+|.|.++++++. + |..
T Consensus 74 ~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~------~~~v~~~~~~~~~~~l~~~~~---~~~~~~g~i 144 (369)
T 3zwl_B 74 TGTIWSIDVDCFTKYCVTGSADYSIKLWDVSNGQCVATWKS------PVPVKRVEFSPCGNYFLAILD---NVMKNPGSI 144 (369)
T ss_dssp SSCEEEEEECTTSSEEEEEETTTEEEEEETTTCCEEEEEEC------SSCEEEEEECTTSSEEEEEEC---CBTTBCCEE
T ss_pred CCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEeec------CCCeEEEEEccCCCEEEEecC---CccCCCCEE
Confidence 4579999998 568999999999999999 6555555552 357999999999999999887 6 777
Q ss_pred EEEecCCCC------------ceeccCCC-CceEEEEEecCCCCCCCCcceEEEEcCCCcEEEEEEecCCcccceeeEEe
Q 002318 93 FYTHAKWSK------------PRVLSKLK-GLVVNAVAWNRQQITEASTKEIILGTDTGQLHEMAVDEKDKREKYIKLLF 159 (936)
Q Consensus 93 ~Y~~~~~~k------------~k~L~klk-g~~I~sVaw~~~~~~~~st~~iLiGt~~G~i~e~~i~~~~~~~~~~k~v~ 159 (936)
+.+.....+ ...+.... ...|.+++|++. ...+++|+.+|.|+...+... .+..+. +
T Consensus 145 ~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~l~~~~~dg~i~i~d~~~~---~~~~~~-~ 214 (369)
T 3zwl_B 145 NIYEIERDSATHELTKVSEEPIHKIITHEGLDAATVAGWSTK------GKYIIAGHKDGKISKYDVSNN---YEYVDS-I 214 (369)
T ss_dssp EEEEEEECTTTCCEEEECSSCSEEEECCTTCCCEEEEEECGG------GCEEEEEETTSEEEEEETTTT---TEEEEE-E
T ss_pred EEEEecCCccceeecccccceeeeccCCcCccceeEEEEcCC------CCEEEEEcCCCEEEEEECCCC---cEeEEE-E
Confidence 665543221 11111111 128999999842 347888999999988876542 111222 2
Q ss_pred eeCCCCCceeeEEEEeeccCCCceEEEEEECCCeEEEEec
Q 002318 160 ELNELPEAFMGLQMETASLSNGTRYYVMAVTPTRLYSFTG 199 (936)
Q Consensus 160 ~l~~~~~~I~gi~~~~~~~~~~~~~~i~ast~~rly~f~~ 199 (936)
... .++|+++.|.. +.++++.++....++.|.-
T Consensus 215 ~~~--~~~v~~~~~~~-----~~~~l~~~~~d~~i~v~d~ 247 (369)
T 3zwl_B 215 DLH--EKSISDMQFSP-----DLTYFITSSRDTNSFLVDV 247 (369)
T ss_dssp ECC--SSCEEEEEECT-----TSSEEEEEETTSEEEEEET
T ss_pred ecC--CCceeEEEECC-----CCCEEEEecCCceEEEEEC
Confidence 333 36799999973 3367777777788887753
No 33
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=97.55 E-value=0.0048 Score=68.22 Aligned_cols=161 Identities=7% Similarity=-0.003 Sum_probs=111.2
Q ss_pred CCCceeEEEEeC---CEEEEEecCCeEEEEeCCCCCceeeEcCCCCCCccceeEEEeCCCCCeEEEEeecCCCccEEEEe
Q 002318 20 GRGVITCMSAGN---DVIVLGTSKGWLIRHDFGAGDSYDIDLSAGRPGEQSIHKVFVDPGGSHCIATIVGSGGAETFYTH 96 (936)
Q Consensus 20 ~~~~i~~l~v~~---n~l~l~~~~g~l~ridl~~~~~~~~~l~~~~~~~~~i~~i~lDp~G~hlli~~~~~~~g~~~Y~~ 96 (936)
..+.|++++.+. +.++.|..+|.|..+|+....+..+..+.. ....|..+-+.|.|..+++++. +|..+.+.
T Consensus 117 h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~~~~~---d~~i~i~d 191 (383)
T 3ei3_B 117 PGDAITGMKFNQFNTNQLFVSSIRGATTLRDFSGSVIQVFAKTDS--WDYWYCCVDVSVSRQMLATGDS---TGRLLLLG 191 (383)
T ss_dssp TTCBEEEEEEETTEEEEEEEEETTTEEEEEETTSCEEEEEECCCC--SSCCEEEEEEETTTTEEEEEET---TSEEEEEE
T ss_pred cCCceeEEEeCCCCCCEEEEEeCCCEEEEEECCCCceEEEeccCC--CCCCeEEEEECCCCCEEEEECC---CCCEEEEE
Confidence 346799999976 688999999999999995444444443321 2367999999999999998888 89998888
Q ss_pred cCCCCceeccCCCCceEEEEEecCCCCCCCCcceEEEEcCCCcEEEEEEecCCcccceeeEEeeeCCCCCceeeEEEEee
Q 002318 97 AKWSKPRVLSKLKGLVVNAVAWNRQQITEASTKEIILGTDTGQLHEMAVDEKDKREKYIKLLFELNELPEAFMGLQMETA 176 (936)
Q Consensus 97 ~~~~k~k~L~klkg~~I~sVaw~~~~~~~~st~~iLiGt~~G~i~e~~i~~~~~~~~~~k~v~~l~~~~~~I~gi~~~~~ 176 (936)
......+.+.. ....|.+++|++.. ..-++.|+.+|.|....+...+......+. +. . .++|+++.|...
T Consensus 192 ~~~~~~~~~~~-h~~~v~~~~~~~~~-----~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~-~~-~--~~~v~~~~~s~~ 261 (383)
T 3ei3_B 192 LDGHEIFKEKL-HKAKVTHAEFNPRC-----DWLMATSSVDATVKLWDLRNIKDKNSYIAE-MP-H--EKPVNAAYFNPT 261 (383)
T ss_dssp TTSCEEEEEEC-SSSCEEEEEECSSC-----TTEEEEEETTSEEEEEEGGGCCSTTCEEEE-EE-C--SSCEEEEEECTT
T ss_pred CCCCEEEEecc-CCCcEEEEEECCCC-----CCEEEEEeCCCEEEEEeCCCCCcccceEEE-ec-C--CCceEEEEEcCC
Confidence 75444444432 34589999999431 125888999999988877653211122222 22 2 367999999720
Q ss_pred ccCCCceEEEEEECCCeEEEEec
Q 002318 177 SLSNGTRYYVMAVTPTRLYSFTG 199 (936)
Q Consensus 177 ~~~~~~~~~i~ast~~rly~f~~ 199 (936)
+.++++.++....++-|.-
T Consensus 262 ----~~~~l~~~~~d~~i~iwd~ 280 (383)
T 3ei3_B 262 ----DSTKLLTTDQRNEIRVYSS 280 (383)
T ss_dssp ----TSCEEEEEESSSEEEEEET
T ss_pred ----CCCEEEEEcCCCcEEEEEC
Confidence 3367777777788887753
No 34
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=97.52 E-value=0.0025 Score=70.59 Aligned_cols=155 Identities=12% Similarity=0.084 Sum_probs=108.4
Q ss_pred CCceeEEEEeC---CEEEEEecCCeEEEEeC-CCCCceeeEcCCCCCCccceeEEEeCC-CCCeEEEEeecCCCccEEEE
Q 002318 21 RGVITCMSAGN---DVIVLGTSKGWLIRHDF-GAGDSYDIDLSAGRPGEQSIHKVFVDP-GGSHCIATIVGSGGAETFYT 95 (936)
Q Consensus 21 ~~~i~~l~v~~---n~l~l~~~~g~l~ridl-~~~~~~~~~l~~~~~~~~~i~~i~lDp-~G~hlli~~~~~~~g~~~Y~ 95 (936)
.+.|+|++.+. +.++.|..+|.|..||+ .+.....+... .....|..+-..| .|..+++++. +|....+
T Consensus 73 ~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~---~h~~~v~~~~~~~~~~~~l~s~~~---d~~i~iw 146 (383)
T 3ei3_B 73 DRRVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQNKTSFIQGM---GPGDAITGMKFNQFNTNQLFVSSI---RGATTLR 146 (383)
T ss_dssp SSCEEEEEECSSCTTEEEEEEBTSCEEEEETTSTTCEEEECCC---STTCBEEEEEEETTEEEEEEEEET---TTEEEEE
T ss_pred CCCEEEEEECCCCCCEEEEEcCCCeEEEEeCCCcccceeeecC---CcCCceeEEEeCCCCCCEEEEEeC---CCEEEEE
Confidence 46799999987 47999999999999999 55544444331 1246899999999 6777777776 8999888
Q ss_pred ecCCCCceeccCCCC--ceEEEEEecCCCCCCCCcceEEEEcCCCcEEEEEEecCCcccceeeEEeeeCCCCCceeeEEE
Q 002318 96 HAKWSKPRVLSKLKG--LVVNAVAWNRQQITEASTKEIILGTDTGQLHEMAVDEKDKREKYIKLLFELNELPEAFMGLQM 173 (936)
Q Consensus 96 ~~~~~k~k~L~klkg--~~I~sVaw~~~~~~~~st~~iLiGt~~G~i~e~~i~~~~~~~~~~k~v~~l~~~~~~I~gi~~ 173 (936)
.......+.+....+ ..|.+++|++. ...++.|+.+|.|....+... .+.. +... .++|+++.|
T Consensus 147 d~~~~~~~~~~~~~~~~~~v~~~~~~~~------~~~l~~~~~d~~i~i~d~~~~-----~~~~-~~~h--~~~v~~~~~ 212 (383)
T 3ei3_B 147 DFSGSVIQVFAKTDSWDYWYCCVDVSVS------RQMLATGDSTGRLLLLGLDGH-----EIFK-EKLH--KAKVTHAEF 212 (383)
T ss_dssp ETTSCEEEEEECCCCSSCCEEEEEEETT------TTEEEEEETTSEEEEEETTSC-----EEEE-EECS--SSCEEEEEE
T ss_pred ECCCCceEEEeccCCCCCCeEEEEECCC------CCEEEEECCCCCEEEEECCCC-----EEEE-eccC--CCcEEEEEE
Confidence 877655555544333 45999999943 247889999999988877321 1222 2223 367999999
Q ss_pred EeeccCCCceEEEEEECCCeEEEEec
Q 002318 174 ETASLSNGTRYYVMAVTPTRLYSFTG 199 (936)
Q Consensus 174 ~~~~~~~~~~~~i~ast~~rly~f~~ 199 (936)
.. .....++.++....++-|.-
T Consensus 213 ~~----~~~~~l~s~~~d~~i~iwd~ 234 (383)
T 3ei3_B 213 NP----RCDWLMATSSVDATVKLWDL 234 (383)
T ss_dssp CS----SCTTEEEEEETTSEEEEEEG
T ss_pred CC----CCCCEEEEEeCCCEEEEEeC
Confidence 73 22226777777777887753
No 35
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=97.49 E-value=0.0062 Score=66.55 Aligned_cols=163 Identities=10% Similarity=0.096 Sum_probs=108.2
Q ss_pred CCCceeEEEEeC----CEEEEEecCCeEEEEeC-CCCCceeeEcCCCCCCccceeEEEeCC-------------CCCeEE
Q 002318 20 GRGVITCMSAGN----DVIVLGTSKGWLIRHDF-GAGDSYDIDLSAGRPGEQSIHKVFVDP-------------GGSHCI 81 (936)
Q Consensus 20 ~~~~i~~l~v~~----n~l~l~~~~g~l~ridl-~~~~~~~~~l~~~~~~~~~i~~i~lDp-------------~G~hll 81 (936)
..+.|++++.+. +.++.|..+|.|..+|+ .+.....+.+.. ....|..+-.+| .|..++
T Consensus 100 ~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~---~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~ 176 (379)
T 3jrp_A 100 HSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDA---HAIGVNSASWAPATIEEDGEHNGTKESRKFV 176 (379)
T ss_dssp CSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSCCCEEEEEC---CTTCEEEEEECCCC----------CTTCEEE
T ss_pred CCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCceeeEEecC---CCCceEEEEEcCccccccccccCCCCCCEEE
Confidence 345799999984 58999999999999999 544333333321 136799999999 588888
Q ss_pred EEeecCCCccEEEEecCCCC--ceeccCCC--CceEEEEEecCCCCCCCCcceEEEEcCCCcEEEEEEecCCcccceeeE
Q 002318 82 ATIVGSGGAETFYTHAKWSK--PRVLSKLK--GLVVNAVAWNRQQITEASTKEIILGTDTGQLHEMAVDEKDKREKYIKL 157 (936)
Q Consensus 82 i~~~~~~~g~~~Y~~~~~~k--~k~L~klk--g~~I~sVaw~~~~~~~~st~~iLiGt~~G~i~e~~i~~~~~~~~~~k~ 157 (936)
+++. +|..+.+.....+ ...+..+. ...|.+++|++.. ....-++.|+.+|.|....+.... ......
T Consensus 177 ~~~~---dg~i~i~d~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~---~~~~~l~s~~~dg~i~iwd~~~~~--~~~~~~ 248 (379)
T 3jrp_A 177 TGGA---DNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTV---LLRSYLASVSQDRTCIIWTQDNEQ--GPWKKT 248 (379)
T ss_dssp EEET---TSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCC---SSSEEEEEEETTSCEEEEEESSTT--SCCEEE
T ss_pred EEeC---CCeEEEEEecCCCcceeeEEEEecccCcEeEEEECCCC---CCCCeEEEEeCCCEEEEEeCCCCC--ccceee
Confidence 8887 8888777654332 12223333 3579999999531 013478888999999888776531 112233
Q ss_pred EeeeCCCCCceeeEEEEeeccCCCceEEEEEECCCeEEEEe
Q 002318 158 LFELNELPEAFMGLQMETASLSNGTRYYVMAVTPTRLYSFT 198 (936)
Q Consensus 158 v~~l~~~~~~I~gi~~~~~~~~~~~~~~i~ast~~rly~f~ 198 (936)
++.....+.+|+++.|.. +.++++.++....++-|.
T Consensus 249 ~~~~~~~~~~v~~~~~s~-----~g~~l~~~~~dg~i~iw~ 284 (379)
T 3jrp_A 249 LLKEEKFPDVLWRASWSL-----SGNVLALSGGDNKVTLWK 284 (379)
T ss_dssp ESSSSCCSSCEEEEEECS-----SSCCEEEEESSSSEEEEE
T ss_pred eeccccCCCcEEEEEEcC-----CCCEEEEecCCCcEEEEe
Confidence 333322346799999973 335677777776676664
No 36
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=97.49 E-value=0.0044 Score=69.86 Aligned_cols=150 Identities=11% Similarity=0.075 Sum_probs=105.3
Q ss_pred CCceeEEEEeC--CEEEEEecCCeEEEEeC-CCCCceeeEcCCCCCCccceeEEEeCCCCCeEEEEeecCCCccEEEEec
Q 002318 21 RGVITCMSAGN--DVIVLGTSKGWLIRHDF-GAGDSYDIDLSAGRPGEQSIHKVFVDPGGSHCIATIVGSGGAETFYTHA 97 (936)
Q Consensus 21 ~~~i~~l~v~~--n~l~l~~~~g~l~ridl-~~~~~~~~~l~~~~~~~~~i~~i~lDp~G~hlli~~~~~~~g~~~Y~~~ 97 (936)
++.|+|++.++ +.++-|..+|+|..||+ .+.....+.-+ ...|..+-++|.|..++.++. +|....++.
T Consensus 108 ~~~V~~~~~~p~~~~l~s~s~Dg~i~vwd~~~~~~~~~l~~h-----~~~V~~v~~~~~~~~l~sgs~---D~~i~iwd~ 179 (410)
T 1vyh_C 108 RSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGH-----TDSVQDISFDHSGKLLASCSA---DMTIKLWDF 179 (410)
T ss_dssp SSCEEEEEECSSSSEEEEEESSSCEEEEETTTCCCCEEECCC-----SSCEEEEEECTTSSEEEEEET---TSCCCEEET
T ss_pred CCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEEecc-----CCcEEEEEEcCCCCEEEEEeC---CCeEEEEeC
Confidence 35699999986 48889999999999999 55554444444 468999999999999888887 898887776
Q ss_pred CCCCceeccCCCC--ceEEEEEecCCCCCCCCcceEEEEcCCCcEEEEEEecCCcccceeeEEeeeCCCCCceeeEEEEe
Q 002318 98 KWSKPRVLSKLKG--LVVNAVAWNRQQITEASTKEIILGTDTGQLHEMAVDEKDKREKYIKLLFELNELPEAFMGLQMET 175 (936)
Q Consensus 98 ~~~k~k~L~klkg--~~I~sVaw~~~~~~~~st~~iLiGt~~G~i~e~~i~~~~~~~~~~k~v~~l~~~~~~I~gi~~~~ 175 (936)
...+ .+..++| ..|.+|+|++. ...++.|+.+|.|....+..+ +.++. +.-. ...|..+.+.
T Consensus 180 ~~~~--~~~~~~~h~~~V~~v~~~p~------~~~l~s~s~D~~i~~wd~~~~----~~~~~-~~~h--~~~v~~~~~~- 243 (410)
T 1vyh_C 180 QGFE--CIRTMHGHDHNVSSVSIMPN------GDHIVSASRDKTIKMWEVQTG----YCVKT-FTGH--REWVRMVRPN- 243 (410)
T ss_dssp TSSC--EEECCCCCSSCEEEEEECSS------SSEEEEEETTSEEEEEETTTC----CEEEE-EECC--SSCEEEEEEC-
T ss_pred CCCc--eeEEEcCCCCCEEEEEEeCC------CCEEEEEeCCCeEEEEECCCC----cEEEE-EeCC--CccEEEEEEC-
Confidence 5543 2333344 47999999942 236888999999888766543 11222 2222 3568888775
Q ss_pred eccCCCceEEEEEECCCeEEEEe
Q 002318 176 ASLSNGTRYYVMAVTPTRLYSFT 198 (936)
Q Consensus 176 ~~~~~~~~~~i~ast~~rly~f~ 198 (936)
.+.++++.++....+.-|.
T Consensus 244 ----~~g~~l~s~s~D~~v~vwd 262 (410)
T 1vyh_C 244 ----QDGTLIASCSNDQTVRVWV 262 (410)
T ss_dssp ----TTSSEEEEEETTSCEEEEE
T ss_pred ----CCCCEEEEEcCCCeEEEEE
Confidence 2335677767677777675
No 37
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=97.49 E-value=0.0045 Score=68.21 Aligned_cols=150 Identities=11% Similarity=0.081 Sum_probs=104.6
Q ss_pred CceeEEEEeC----CEEEEEecCCeEEEEeC-CCCCceeeEcCCCCCCccceeEEEeCCCCCeEEEEeecCCCccEEEEe
Q 002318 22 GVITCMSAGN----DVIVLGTSKGWLIRHDF-GAGDSYDIDLSAGRPGEQSIHKVFVDPGGSHCIATIVGSGGAETFYTH 96 (936)
Q Consensus 22 ~~i~~l~v~~----n~l~l~~~~g~l~ridl-~~~~~~~~~l~~~~~~~~~i~~i~lDp~G~hlli~~~~~~~g~~~Y~~ 96 (936)
..|+|++++. +.++.|..+|+|..||+ .+..+..+..+ ...|..+-.+|.|..++.++. +|....+.
T Consensus 197 ~~v~~~~~~~~~~g~~l~sgs~Dg~v~~wd~~~~~~~~~~~~h-----~~~v~~v~~~p~~~~l~s~s~---D~~v~lwd 268 (354)
T 2pbi_B 197 ADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQCVQAFETH-----ESDVNSVRYYPSGDAFASGSD---DATCRLYD 268 (354)
T ss_dssp SCEEEEEECCCSSCCEEEEEETTSCEEEEETTTCCEEEEECCC-----SSCEEEEEECTTSSEEEEEET---TSCEEEEE
T ss_pred CCeEEEEEEeCCCCCEEEEEeCCCeEEEEECCCCcEEEEecCC-----CCCeEEEEEeCCCCEEEEEeC---CCeEEEEE
Confidence 4588888853 68999999999999999 55544444443 467999999999999888887 89888887
Q ss_pred cCCCCce-eccCC-CCceEEEEEecCCCCCCCCcceEEEEcCCCcEEEEEEecCCcccceeeEEeeeCCCCCceeeEEEE
Q 002318 97 AKWSKPR-VLSKL-KGLVVNAVAWNRQQITEASTKEIILGTDTGQLHEMAVDEKDKREKYIKLLFELNELPEAFMGLQME 174 (936)
Q Consensus 97 ~~~~k~k-~L~kl-kg~~I~sVaw~~~~~~~~st~~iLiGt~~G~i~e~~i~~~~~~~~~~k~v~~l~~~~~~I~gi~~~ 174 (936)
....+.. .+..- ....+.+++|++. ..-++.|+.+|.|....+..+ +.+..+.+-.++|+++.|.
T Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~s~~------g~~l~~g~~d~~i~vwd~~~~-------~~~~~l~~h~~~v~~l~~s 335 (354)
T 2pbi_B 269 LRADREVAIYSKESIIFGASSVDFSLS------GRLLFAGYNDYTINVWDVLKG-------SRVSILFGHENRVSTLRVS 335 (354)
T ss_dssp TTTTEEEEEECCTTCCSCEEEEEECTT------SSEEEEEETTSCEEEEETTTC-------SEEEEECCCSSCEEEEEEC
T ss_pred CCCCcEEEEEcCCCcccceeEEEEeCC------CCEEEEEECCCcEEEEECCCC-------ceEEEEECCCCcEEEEEEC
Confidence 6554322 22211 1247899999842 236788899999988776433 1122333324679999996
Q ss_pred eeccCCCceEEEEEECCCeEEEE
Q 002318 175 TASLSNGTRYYVMAVTPTRLYSF 197 (936)
Q Consensus 175 ~~~~~~~~~~~i~ast~~rly~f 197 (936)
. +.++++.++....+.-|
T Consensus 336 p-----dg~~l~sgs~D~~v~vW 353 (354)
T 2pbi_B 336 P-----DGTAFCSGSWDHTLRVW 353 (354)
T ss_dssp T-----TSSCEEEEETTSEEEEE
T ss_pred C-----CCCEEEEEcCCCCEEec
Confidence 2 33577777777777766
No 38
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=97.47 E-value=0.0015 Score=71.22 Aligned_cols=156 Identities=7% Similarity=-0.045 Sum_probs=107.5
Q ss_pred CceeEEEEeCC------EEEEEecCCeEEEEeC-CCCCceeeEcCCCCCCccceeEEEeCC-CCCeEEEEeecCCCccEE
Q 002318 22 GVITCMSAGND------VIVLGTSKGWLIRHDF-GAGDSYDIDLSAGRPGEQSIHKVFVDP-GGSHCIATIVGSGGAETF 93 (936)
Q Consensus 22 ~~i~~l~v~~n------~l~l~~~~g~l~ridl-~~~~~~~~~l~~~~~~~~~i~~i~lDp-~G~hlli~~~~~~~g~~~ 93 (936)
+.|++++.+.+ .++.|..+|.|..+|+ .+..+..+.-+ ...|..+...| .|..+++++. +|...
T Consensus 70 ~~v~~~~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~-----~~~i~~~~~~~~~~~~l~s~~~---dg~i~ 141 (366)
T 3k26_A 70 ENFYTCAWTYDSNTSHPLLAVAGSRGIIRIINPITMQCIKHYVGH-----GNAINELKFHPRDPNLLLSVSK---DHALR 141 (366)
T ss_dssp CCEEEEEEEECTTTCCEEEEEEETTCEEEEECTTTCCEEEEEESC-----CSCEEEEEECSSCTTEEEEEET---TSCEE
T ss_pred CcEEEEEeccCCCCCCCEEEEecCCCEEEEEEchhceEeeeecCC-----CCcEEEEEECCCCCCEEEEEeC---CCeEE
Confidence 56899999877 8999999999999999 55545555433 46899999999 8888888887 89998
Q ss_pred EEecCCCCc-eecc--CCCCceEEEEEecCCCCCCCCcceEEEEcCCCcEEEEEEecCCcccceee--------------
Q 002318 94 YTHAKWSKP-RVLS--KLKGLVVNAVAWNRQQITEASTKEIILGTDTGQLHEMAVDEKDKREKYIK-------------- 156 (936)
Q Consensus 94 Y~~~~~~k~-k~L~--klkg~~I~sVaw~~~~~~~~st~~iLiGt~~G~i~e~~i~~~~~~~~~~k-------------- 156 (936)
.++....+. ..+. .-.+..|.+++|++. ...++.|+.+|.|....+..... ...++
T Consensus 142 iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~------~~~l~~~~~dg~i~i~d~~~~~~-~~~~~~~~~~~~~~~~~~~ 214 (366)
T 3k26_A 142 LWNIQTDTLVAIFGGVEGHRDEVLSADYDLL------GEKIMSCGMDHSLKLWRINSKRM-MNAIKESYDYNPNKTNRPF 214 (366)
T ss_dssp EEETTTTEEEEEECSTTSCSSCEEEEEECTT------SSEEEEEETTSCEEEEESCSHHH-HHHHHHHHTCCGGGCSSCC
T ss_pred EEEeecCeEEEEecccccccCceeEEEECCC------CCEEEEecCCCCEEEEECCCCcc-ccccceeEEecCCCCcccc
Confidence 888765433 2232 123468999999942 24788899999999887754310 00000
Q ss_pred --------EEeeeCCCCCceeeEEEEeeccCCCceEEEEEECCCeEEEEec
Q 002318 157 --------LLFELNELPEAFMGLQMETASLSNGTRYYVMAVTPTRLYSFTG 199 (936)
Q Consensus 157 --------~v~~l~~~~~~I~gi~~~~~~~~~~~~~~i~ast~~rly~f~~ 199 (936)
.........++|+++.|. + ++++.++....++.|.-
T Consensus 215 ~~~~~~~~~~~~~~~~~~~v~~~~~~-----~--~~l~~~~~d~~i~~wd~ 258 (366)
T 3k26_A 215 ISQKIHFPDFSTRDIHRNYVDCVRWL-----G--DLILSKSCENAIVCWKP 258 (366)
T ss_dssp CCEEECCCSEEECSSCSSCCCEEEEE-----T--TEEEEECSSSEEEEEEE
T ss_pred cceeeccCccccccCCcceEEEEEEc-----C--CEEEEEecCCEEEEEeC
Confidence 000111123679999997 1 46777667788887753
No 39
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=97.47 E-value=0.0056 Score=69.00 Aligned_cols=159 Identities=10% Similarity=0.054 Sum_probs=109.3
Q ss_pred CCceeEEEEeC--CEEEEEecCCeEEEEeC-CCCCceeeEcCCCCCCccceeEEEeCCCCCeEEEEeecCCCccEEEEec
Q 002318 21 RGVITCMSAGN--DVIVLGTSKGWLIRHDF-GAGDSYDIDLSAGRPGEQSIHKVFVDPGGSHCIATIVGSGGAETFYTHA 97 (936)
Q Consensus 21 ~~~i~~l~v~~--n~l~l~~~~g~l~ridl-~~~~~~~~~l~~~~~~~~~i~~i~lDp~G~hlli~~~~~~~g~~~Y~~~ 97 (936)
.+.|+++++++ +.++.|..+|+|..||+ .+..+..+.-+ ...|..+..+|.|..++.++. +|....+..
T Consensus 192 ~~~V~~v~~~p~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~h-----~~~v~~~~~~~~g~~l~s~s~---D~~v~vwd~ 263 (410)
T 1vyh_C 192 DHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGH-----REWVRMVRPNQDGTLIASCSN---DQTVRVWVV 263 (410)
T ss_dssp SSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECC-----SSCEEEEEECTTSSEEEEEET---TSCEEEEET
T ss_pred CCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEeCC-----CccEEEEEECCCCCEEEEEcC---CCeEEEEEC
Confidence 35699999964 58999999999999999 55555555444 357899999999999998888 899988877
Q ss_pred CCCCceeccCCCCceEEEEEecCCCCC-------C-------CCcceEEEEcCCCcEEEEEEecCCcccceeeEEeeeCC
Q 002318 98 KWSKPRVLSKLKGLVVNAVAWNRQQIT-------E-------ASTKEIILGTDTGQLHEMAVDEKDKREKYIKLLFELNE 163 (936)
Q Consensus 98 ~~~k~k~L~klkg~~I~sVaw~~~~~~-------~-------~st~~iLiGt~~G~i~e~~i~~~~~~~~~~k~v~~l~~ 163 (936)
...+....-+-....|.+++|.+.... . ....-++.|+.+|.|....+..+ +.+..+.+
T Consensus 264 ~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~~i~iwd~~~~-------~~~~~~~~ 336 (410)
T 1vyh_C 264 ATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTG-------MCLMTLVG 336 (410)
T ss_dssp TTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTT-------EEEEEEEC
T ss_pred CCCceeeEecCCCceEEEEEEcCcccccchhhhccccccccCCCCCEEEEEeCCCeEEEEECCCC-------ceEEEEEC
Confidence 665443322224468999999954210 0 01224777889998887766432 12223332
Q ss_pred CCCceeeEEEEeeccCCCceEEEEEECCCeEEEEec
Q 002318 164 LPEAFMGLQMETASLSNGTRYYVMAVTPTRLYSFTG 199 (936)
Q Consensus 164 ~~~~I~gi~~~~~~~~~~~~~~i~ast~~rly~f~~ 199 (936)
-..+|+++.|.. +.++++-++....++-|.-
T Consensus 337 h~~~v~~v~~~~-----~g~~l~s~s~D~~i~vwd~ 367 (410)
T 1vyh_C 337 HDNWVRGVLFHS-----GGKFILSCADDKTLRVWDY 367 (410)
T ss_dssp CSSCEEEEEECS-----SSSCEEEEETTTEEEEECC
T ss_pred CCCcEEEEEEcC-----CCCEEEEEeCCCeEEEEEC
Confidence 236799999862 2357777777888888853
No 40
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=97.46 E-value=0.0074 Score=65.94 Aligned_cols=155 Identities=8% Similarity=0.087 Sum_probs=104.9
Q ss_pred CCceeEEEEe-CCEEEEEecCCeEEEEeC-CCCCceeeEcCCCCCCccceeEEEeCCCCCeEEEEeecCCCccEEEEecC
Q 002318 21 RGVITCMSAG-NDVIVLGTSKGWLIRHDF-GAGDSYDIDLSAGRPGEQSIHKVFVDPGGSHCIATIVGSGGAETFYTHAK 98 (936)
Q Consensus 21 ~~~i~~l~v~-~n~l~l~~~~g~l~ridl-~~~~~~~~~l~~~~~~~~~i~~i~lDp~G~hlli~~~~~~~g~~~Y~~~~ 98 (936)
.+.|+|++.. ++.++.|..+|+|..||+ .+..+..+.-+ ...|..+.+.|.|..++.++. +|....++..
T Consensus 143 ~~~v~~~~~~~~~~l~s~s~d~~i~~wd~~~~~~~~~~~~h-----~~~v~~~~~~~~~~~l~sg~~---d~~v~~wd~~ 214 (340)
T 1got_B 143 TGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGH-----TGDVMSLSLAPDTRLFVSGAC---DASAKLWDVR 214 (340)
T ss_dssp SSCEEEEEEEETTEEEEEETTSCEEEEETTTTEEEEEECCC-----SSCEEEEEECTTSSEEEEEET---TSCEEEEETT
T ss_pred CccEEEEEECCCCcEEEEECCCcEEEEECCCCcEEEEEcCC-----CCceEEEEECCCCCEEEEEeC---CCcEEEEECC
Confidence 3457777764 567888899999999999 54444444333 367999999999998888877 8999888876
Q ss_pred CCCceeccCCCCceEEEEEecCCCCCCCCcceEEEEcCCCcEEEEEEecCCcccceeeEEeeeCCCCCceeeEEEEeecc
Q 002318 99 WSKPRVLSKLKGLVVNAVAWNRQQITEASTKEIILGTDTGQLHEMAVDEKDKREKYIKLLFELNELPEAFMGLQMETASL 178 (936)
Q Consensus 99 ~~k~k~L~klkg~~I~sVaw~~~~~~~~st~~iLiGt~~G~i~e~~i~~~~~~~~~~k~v~~l~~~~~~I~gi~~~~~~~ 178 (936)
..+....-+-....|.+|+|++. ...++.|+.+|.|....+... +... .+..+....+|+.+.|..
T Consensus 215 ~~~~~~~~~~h~~~v~~v~~~p~------~~~l~s~s~d~~v~iwd~~~~----~~~~-~~~~~~~~~~v~~~~~s~--- 280 (340)
T 1got_B 215 EGMCRQTFTGHESDINAICFFPN------GNAFATGSDDATCRLFDLRAD----QELM-TYSHDNIICGITSVSFSK--- 280 (340)
T ss_dssp TCSEEEEECCCSSCEEEEEECTT------SSEEEEEETTSCEEEEETTTT----EEEE-EECCTTCCSCEEEEEECT---
T ss_pred CCeeEEEEcCCcCCEEEEEEcCC------CCEEEEEcCCCcEEEEECCCC----cEEE-EEccCCcccceEEEEECC---
Confidence 55432211113357999999953 247889999999887766432 1111 122222224688888862
Q ss_pred CCCceEEEEEECCCeEEEEec
Q 002318 179 SNGTRYYVMAVTPTRLYSFTG 199 (936)
Q Consensus 179 ~~~~~~~i~ast~~rly~f~~ 199 (936)
+.++++.++....++-|.-
T Consensus 281 --~g~~l~~g~~d~~i~vwd~ 299 (340)
T 1got_B 281 --SGRLLLAGYDDFNCNVWDA 299 (340)
T ss_dssp --TSSEEEEEETTSEEEEEET
T ss_pred --CCCEEEEECCCCeEEEEEc
Confidence 3367777777888887863
No 41
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=97.44 E-value=0.0057 Score=65.64 Aligned_cols=153 Identities=7% Similarity=0.033 Sum_probs=108.5
Q ss_pred CCCceeEEEEeC--CEEEEEecCCeEEEEeC-CCCCceeeEcCCCCCCccceeEEEeCCCCCeEEEEeecCCCccEEEEe
Q 002318 20 GRGVITCMSAGN--DVIVLGTSKGWLIRHDF-GAGDSYDIDLSAGRPGEQSIHKVFVDPGGSHCIATIVGSGGAETFYTH 96 (936)
Q Consensus 20 ~~~~i~~l~v~~--n~l~l~~~~g~l~ridl-~~~~~~~~~l~~~~~~~~~i~~i~lDp~G~hlli~~~~~~~g~~~Y~~ 96 (936)
-.+.|++++.+. +.++-|..+|+|..||+ .+..+..+..+ ...|..+-+.|.|.+++.++. +|....++
T Consensus 12 h~~~V~~~~fsp~~~~l~s~~~dg~v~lWd~~~~~~~~~~~~~-----~~~v~~~~~~~~~~~l~s~s~---d~~i~vwd 83 (304)
T 2ynn_A 12 RSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVRSIQVT-----ETPVRAGKFIARKNWIIVGSD---DFRIRVFN 83 (304)
T ss_dssp ECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECC-----SSCEEEEEEEGGGTEEEEEET---TSEEEEEE
T ss_pred CCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCceeEEeecc-----CCcEEEEEEeCCCCEEEEECC---CCEEEEEE
Confidence 346799999985 47888999999999999 55555555554 457888999999999999888 89988888
Q ss_pred cCCCCceeccCCCC--ceEEEEEecCCCCCCCCcceEEEEcCCCcEEEEEEecCCcccceeeEEeeeCCCCCceeeEEEE
Q 002318 97 AKWSKPRVLSKLKG--LVVNAVAWNRQQITEASTKEIILGTDTGQLHEMAVDEKDKREKYIKLLFELNELPEAFMGLQME 174 (936)
Q Consensus 97 ~~~~k~k~L~klkg--~~I~sVaw~~~~~~~~st~~iLiGt~~G~i~e~~i~~~~~~~~~~k~v~~l~~~~~~I~gi~~~ 174 (936)
....+. +..+++ ..|.+|+|++. ...++.|+.+|.|....+..+ ..+...+.-. ..+|+++.|.
T Consensus 84 ~~~~~~--~~~~~~h~~~v~~~~~~~~------~~~l~sgs~D~~v~lWd~~~~----~~~~~~~~~h--~~~v~~v~~~ 149 (304)
T 2ynn_A 84 YNTGEK--VVDFEAHPDYIRSIAVHPT------KPYVLSGSDDLTVKLWNWENN----WALEQTFEGH--EHFVMCVAFN 149 (304)
T ss_dssp TTTCCE--EEEEECCSSCEEEEEECSS------SSEEEEEETTSCEEEEEGGGT----TEEEEEECCC--CSCEEEEEEC
T ss_pred CCCCcE--EEEEeCCCCcEEEEEEcCC------CCEEEEECCCCeEEEEECCCC----cchhhhhccc--CCcEEEEEEC
Confidence 655432 222333 47999999943 236888999999988776543 1223333323 3679999986
Q ss_pred eeccCCCceEEEEEECCCeEEEEe
Q 002318 175 TASLSNGTRYYVMAVTPTRLYSFT 198 (936)
Q Consensus 175 ~~~~~~~~~~~i~ast~~rly~f~ 198 (936)
. .+...++.++....+.-|.
T Consensus 150 p----~~~~~l~sgs~D~~v~iwd 169 (304)
T 2ynn_A 150 P----KDPSTFASGCLDRTVKVWS 169 (304)
T ss_dssp T----TCTTEEEEEETTSEEEEEE
T ss_pred C----CCCCEEEEEeCCCeEEEEE
Confidence 3 1235677767777777775
No 42
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=97.44 E-value=0.011 Score=64.28 Aligned_cols=161 Identities=13% Similarity=0.076 Sum_probs=104.8
Q ss_pred CCCceeEEEEeCCEEEEEecCCeEEEEeCCCCCceee-EcCCCCCCccceeEEEeCCCCCeEEEEeecCCCccEEEEecC
Q 002318 20 GRGVITCMSAGNDVIVLGTSKGWLIRHDFGAGDSYDI-DLSAGRPGEQSIHKVFVDPGGSHCIATIVGSGGAETFYTHAK 98 (936)
Q Consensus 20 ~~~~i~~l~v~~n~l~l~~~~g~l~ridl~~~~~~~~-~l~~~~~~~~~i~~i~lDp~G~hlli~~~~~~~g~~~Y~~~~ 98 (936)
-.+.|.+++.+.+.|+-|..+|+|..+|+.......+ .+... .-...|..+-..|.|..++.++. +|....++..
T Consensus 13 h~~~v~~~~~s~~~las~~~D~~i~lw~~~~~~~~~~~~~~~~-~h~~~v~~v~~sp~~~~las~s~---D~~v~iw~~~ 88 (330)
T 2hes_X 13 YKEKIWSFDFSQGILATGSTDRKIKLVSVKYDDFTLIDVLDET-AHKKAIRSVAWRPHTSLLAAGSF---DSTVSIWAKE 88 (330)
T ss_dssp CSSCEEEEEEETTEEEEEESSSCEEEEECSSSCCEEEEEECTT-CCCSCEEEEEECTTSSEEEEEET---TSCEEEEEC-
T ss_pred CCCceeeeccCCCEEEEEcCCCEEEEEEecCCCeEEEEEEecC-CccCCEEEEEECCCCCEEEEEeC---CCcEEEEEcc
Confidence 3467999999999999999999999999933222212 12111 01467999999999999888887 8888777653
Q ss_pred CC-----CceeccCCCC--ceEEEEEecCCCCCCCCcceEEEEcCCCcEEEEEEecCCcccceeeEEeeeCCCCCceeeE
Q 002318 99 WS-----KPRVLSKLKG--LVVNAVAWNRQQITEASTKEIILGTDTGQLHEMAVDEKDKREKYIKLLFELNELPEAFMGL 171 (936)
Q Consensus 99 ~~-----k~k~L~klkg--~~I~sVaw~~~~~~~~st~~iLiGt~~G~i~e~~i~~~~~~~~~~k~v~~l~~~~~~I~gi 171 (936)
.. ..+.+..++| ..|.+|+|++. ...++.|+.+|.|....+..... ..+.+..+.+-..+|+++
T Consensus 89 ~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~------g~~las~s~D~~v~iwd~~~~~~---~~~~~~~~~~h~~~v~~v 159 (330)
T 2hes_X 89 ESADRTFEMDLLAIIEGHENEVKGVAWSND------GYYLATCSRDKSVWIWETDESGE---EYECISVLQEHSQDVKHV 159 (330)
T ss_dssp ------CCCEEEEEEC----CEEEEEECTT------SCEEEEEETTSCEEEEECCTTCC---CCEEEEEECCCSSCEEEE
T ss_pred cCcCccccceeEEEEcCCCCcEEEEEECCC------CCEEEEEeCCCEEEEEeccCCCC---CeEEEEEeccCCCceEEE
Confidence 21 1233334445 37999999943 23678889999998877743211 122233343323679999
Q ss_pred EEEeeccCCCceEEEEEECCCeEEEEe
Q 002318 172 QMETASLSNGTRYYVMAVTPTRLYSFT 198 (936)
Q Consensus 172 ~~~~~~~~~~~~~~i~ast~~rly~f~ 198 (936)
.|.. +.+.++-++....+.-|.
T Consensus 160 ~~~p-----~~~~l~s~s~D~~i~iW~ 181 (330)
T 2hes_X 160 IWHP-----SEALLASSSYDDTVRIWK 181 (330)
T ss_dssp EECS-----SSSEEEEEETTSCEEEEE
T ss_pred EECC-----CCCEEEEEcCCCeEEEEE
Confidence 9963 235677777666666664
No 43
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=97.43 E-value=0.0043 Score=68.31 Aligned_cols=155 Identities=12% Similarity=0.190 Sum_probs=103.5
Q ss_pred CCceeEEEEeC--CEEEEEecCCeEEEEeC-CCCCceeeEcCCCCCCccceeEEEeCCCCCeEEEE-eecCCCccEEEEe
Q 002318 21 RGVITCMSAGN--DVIVLGTSKGWLIRHDF-GAGDSYDIDLSAGRPGEQSIHKVFVDPGGSHCIAT-IVGSGGAETFYTH 96 (936)
Q Consensus 21 ~~~i~~l~v~~--n~l~l~~~~g~l~ridl-~~~~~~~~~l~~~~~~~~~i~~i~lDp~G~hlli~-~~~~~~g~~~Y~~ 96 (936)
.+.|+|++++. +.|+-|..+|+|..+|+ .+..+..+.-+ ...|..+-..|.|..++++ +. +|....++
T Consensus 127 ~~~V~~v~~spdg~~l~sgs~d~~i~iwd~~~~~~~~~~~~h-----~~~V~~~~~~~~~~~~l~s~s~---D~~v~iwd 198 (344)
T 4gqb_B 127 DDIVSTVSVLSSGTQAVSGSKDICIKVWDLAQQVVLSSYRAH-----AAQVTCVAASPHKDSVFLSCSE---DNRILLWD 198 (344)
T ss_dssp SSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCC-----SSCEEEEEECSSCTTEEEEEET---TSCEEEEE
T ss_pred CCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCc-----CCceEEEEecCCCCCceeeecc---cccccccc
Confidence 45799999975 48899999999999999 55444444333 4689999999999876654 44 78888887
Q ss_pred cCCCCc-eecc-CCCCceEEEEEecCCCCCCCCcceEEEEcCCCcEEEEEEecCCcccceeeEEeeeCCCCCceeeEEEE
Q 002318 97 AKWSKP-RVLS-KLKGLVVNAVAWNRQQITEASTKEIILGTDTGQLHEMAVDEKDKREKYIKLLFELNELPEAFMGLQME 174 (936)
Q Consensus 97 ~~~~k~-k~L~-klkg~~I~sVaw~~~~~~~~st~~iLiGt~~G~i~e~~i~~~~~~~~~~k~v~~l~~~~~~I~gi~~~ 174 (936)
....+. +.+. ...+..+.+++|++.. ..-++.|+.+|.|....+... +.+..+..-..+|+++.|.
T Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~-----~~~l~sg~~dg~v~~wd~~~~-------~~~~~~~~h~~~v~~v~fs 266 (344)
T 4gqb_B 199 TRCPKPASQIGCSAPGYLPTSLAWHPQQ-----SEVFVFGDENGTVSLVDTKST-------SCVLSSAVHSQCVTGLVFS 266 (344)
T ss_dssp TTSSSCEEECC----CCCEEEEEECSSC-----TTEEEEEETTSEEEEEESCC---------CCEEEECCSSCEEEEEEC
T ss_pred ccccceeeeeecceeeccceeeeecCCC-----CcceEEeccCCcEEEEECCCC-------cEEEEEcCCCCCEEEEEEc
Confidence 766543 2332 2346689999999432 224667999999887765432 2222333223679999986
Q ss_pred eeccCCCceEEEEEECCCeEEEEec
Q 002318 175 TASLSNGTRYYVMAVTPTRLYSFTG 199 (936)
Q Consensus 175 ~~~~~~~~~~~i~ast~~rly~f~~ 199 (936)
. ...++++-++....++-|.-
T Consensus 267 p----~g~~~lasgs~D~~i~vwd~ 287 (344)
T 4gqb_B 267 P----HSVPFLASLSEDCSLAVLDS 287 (344)
T ss_dssp S----SSSCCEEEEETTSCEEEECT
T ss_pred c----CCCeEEEEEeCCCeEEEEEC
Confidence 3 22356666777777887753
No 44
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=97.42 E-value=0.0042 Score=65.94 Aligned_cols=149 Identities=11% Similarity=0.076 Sum_probs=102.6
Q ss_pred CCCceeEEEEeCCEEEEEecCCeEEEEeCCCCCceeeEcCCCCCCccceeEEEeCC-CCCeEEEEeecCCCccEEEEecC
Q 002318 20 GRGVITCMSAGNDVIVLGTSKGWLIRHDFGAGDSYDIDLSAGRPGEQSIHKVFVDP-GGSHCIATIVGSGGAETFYTHAK 98 (936)
Q Consensus 20 ~~~~i~~l~v~~n~l~l~~~~g~l~ridl~~~~~~~~~l~~~~~~~~~i~~i~lDp-~G~hlli~~~~~~~g~~~Y~~~~ 98 (936)
..+.|++++..++.++.|..+|.|..+|. ...+..+..+ ...|..+-..| .|..+++++. +|....++.
T Consensus 103 ~~~~i~~~~~~~~~l~~~~~d~~i~~~d~-~~~~~~~~~~-----~~~v~~~~~~~~~~~~l~~~~~---d~~i~i~d~- 172 (313)
T 3odt_A 103 HQGNVCSLSFQDGVVISGSWDKTAKVWKE-GSLVYNLQAH-----NASVWDAKVVSFSENKFLTASA---DKTIKLWQN- 172 (313)
T ss_dssp CSSCEEEEEEETTEEEEEETTSEEEEEET-TEEEEEEECC-----SSCEEEEEEEETTTTEEEEEET---TSCEEEEET-
T ss_pred cccCEEEEEecCCEEEEEeCCCCEEEEcC-CcEEEecccC-----CCceeEEEEccCCCCEEEEEEC---CCCEEEEec-
Confidence 44679999999999999999999999993 2223333333 35677776666 8888888887 888877762
Q ss_pred CCCceeccCCCCceEEEEEecCCCCCCCCcceEEEEcCCCcEEEEEEecCCcccceeeEEeeeCCCCCceeeEEEEeecc
Q 002318 99 WSKPRVLSKLKGLVVNAVAWNRQQITEASTKEIILGTDTGQLHEMAVDEKDKREKYIKLLFELNELPEAFMGLQMETASL 178 (936)
Q Consensus 99 ~~k~k~L~klkg~~I~sVaw~~~~~~~~st~~iLiGt~~G~i~e~~i~~~~~~~~~~k~v~~l~~~~~~I~gi~~~~~~~ 178 (936)
....+.+....+..|.+++|.+. +.++.|+.+|.|....+... +.+..+..-.++|+++.|..
T Consensus 173 ~~~~~~~~~~~~~~i~~~~~~~~-------~~~~~~~~dg~i~i~d~~~~-------~~~~~~~~~~~~i~~~~~~~--- 235 (313)
T 3odt_A 173 DKVIKTFSGIHNDVVRHLAVVDD-------GHFISCSNDGLIKLVDMHTG-------DVLRTYEGHESFVYCIKLLP--- 235 (313)
T ss_dssp TEEEEEECSSCSSCEEEEEEEET-------TEEEEEETTSEEEEEETTTC-------CEEEEEECCSSCEEEEEECT---
T ss_pred CceEEEEeccCcccEEEEEEcCC-------CeEEEccCCCeEEEEECCch-------hhhhhhhcCCceEEEEEEec---
Confidence 22233344335568999999842 24999999999988876543 12222322236799999873
Q ss_pred CCCceEEEEEECCCeEEEEe
Q 002318 179 SNGTRYYVMAVTPTRLYSFT 198 (936)
Q Consensus 179 ~~~~~~~i~ast~~rly~f~ 198 (936)
. +.++.++....++-|.
T Consensus 236 -~--~~l~~~~~dg~v~iwd 252 (313)
T 3odt_A 236 -N--GDIVSCGEDRTVRIWS 252 (313)
T ss_dssp -T--SCEEEEETTSEEEEEC
T ss_pred -C--CCEEEEecCCEEEEEE
Confidence 2 2366666788888775
No 45
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=97.41 E-value=0.0068 Score=67.72 Aligned_cols=155 Identities=8% Similarity=0.059 Sum_probs=101.3
Q ss_pred CCceeEEEEeC---CEEEEEecCCeEEEEeC-CCC-------CceeeEcCCCCCCccceeEEEeCCCCC-eEEEEeecCC
Q 002318 21 RGVITCMSAGN---DVIVLGTSKGWLIRHDF-GAG-------DSYDIDLSAGRPGEQSIHKVFVDPGGS-HCIATIVGSG 88 (936)
Q Consensus 21 ~~~i~~l~v~~---n~l~l~~~~g~l~ridl-~~~-------~~~~~~l~~~~~~~~~i~~i~lDp~G~-hlli~~~~~~ 88 (936)
.+.|++++.+. +.++.|..+|+|..||+ ... .+..+.-+ ...|..+-..|.|. .++.++.
T Consensus 81 ~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~h-----~~~v~~~~~~p~~~~~l~s~~~--- 152 (402)
T 2aq5_A 81 TAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGH-----TKRVGIVAWHPTAQNVLLSAGC--- 152 (402)
T ss_dssp SSCEEEEEECTTCTTEEEEEETTSEEEEEECCTTCCSSCBCSCSEEEECC-----SSCEEEEEECSSBTTEEEEEET---
T ss_pred CCCEEEEEeCCCCCCEEEEEeCCCeEEEEEccCCCCccccCCceEEecCC-----CCeEEEEEECcCCCCEEEEEcC---
Confidence 45799999964 69999999999999999 442 23333333 46899999999995 5666665
Q ss_pred CccEEEEecCCCCc-eecc-CCCCceEEEEEecCCCCCCCCcceEEEEcCCCcEEEEEEecCCcccceeeEEeeeCCCCC
Q 002318 89 GAETFYTHAKWSKP-RVLS-KLKGLVVNAVAWNRQQITEASTKEIILGTDTGQLHEMAVDEKDKREKYIKLLFELNELPE 166 (936)
Q Consensus 89 ~g~~~Y~~~~~~k~-k~L~-klkg~~I~sVaw~~~~~~~~st~~iLiGt~~G~i~e~~i~~~~~~~~~~k~v~~l~~~~~ 166 (936)
+|....++....+. ..+. .-....|.+++|++. ...++.|+.+|.|....+... +....+..... ..
T Consensus 153 dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~------~~~l~~~~~d~~i~iwd~~~~----~~~~~~~~~~~-~~ 221 (402)
T 2aq5_A 153 DNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWSRD------GALICTSCRDKRVRVIEPRKG----TVVAEKDRPHE-GT 221 (402)
T ss_dssp TSCEEEEETTTTEEEEEECTTTCCSCEEEEEECTT------SSCEEEEETTSEEEEEETTTT----EEEEEEECSSC-SS
T ss_pred CCEEEEEECCCCCccEEEecCCCCCceEEEEECCC------CCEEEEEecCCcEEEEeCCCC----ceeeeeccCCC-CC
Confidence 89888888765543 2231 223458999999942 237889999999988776543 11222111221 12
Q ss_pred ceeeEEEEeeccCCCceEEEEE---ECCCeEEEEec
Q 002318 167 AFMGLQMETASLSNGTRYYVMA---VTPTRLYSFTG 199 (936)
Q Consensus 167 ~I~gi~~~~~~~~~~~~~~i~a---st~~rly~f~~ 199 (936)
.+..+.|.. +.++++.. +....++-|.-
T Consensus 222 ~~~~~~~~~-----~~~~l~~g~~~~~d~~i~iwd~ 252 (402)
T 2aq5_A 222 RPVHAVFVS-----EGKILTTGFSRMSERQVALWDT 252 (402)
T ss_dssp SCCEEEECS-----TTEEEEEEECTTCCEEEEEEET
T ss_pred cceEEEEcC-----CCcEEEEeccCCCCceEEEEcC
Confidence 378888862 23455554 34667776753
No 46
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=97.41 E-value=0.0046 Score=75.81 Aligned_cols=165 Identities=10% Similarity=0.104 Sum_probs=110.4
Q ss_pred CCceeEEEEe----CCEEEEEecCCeEEEEeC-CCC--CceeeEcCCCCCCccceeEEEeCCC--CCeEEEEeecCCCcc
Q 002318 21 RGVITCMSAG----NDVIVLGTSKGWLIRHDF-GAG--DSYDIDLSAGRPGEQSIHKVFVDPG--GSHCIATIVGSGGAE 91 (936)
Q Consensus 21 ~~~i~~l~v~----~n~l~l~~~~g~l~ridl-~~~--~~~~~~l~~~~~~~~~i~~i~lDp~--G~hlli~~~~~~~g~ 91 (936)
.+.|++++.+ ++.++.|..+|.|..||+ .+. .+..+.-+ ...|..+-..|. |..+++++. +|.
T Consensus 53 ~~~V~~l~~s~~~~~~~l~s~s~Dg~I~vwd~~~~~~~~~~~~~~h-----~~~V~~v~~sp~~~~~~l~sgs~---dg~ 124 (753)
T 3jro_A 53 EGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGRWSQIAVHAVH-----SASVNSVQWAPHEYGPLLLVASS---DGK 124 (753)
T ss_dssp SSCEEEEEECCTTSCSEEEEEETTSCEEEEEEETTEEEEEEEECCC-----SSCEEEEEECCGGGCSEEEEEET---TSE
T ss_pred cCceEEEEecCCCCCCEEEEEeCCCeEEEEECCCCcccccccccCC-----CCCeEEEEECCCCCCCEEEEEeC---CCc
Confidence 4679999997 679999999999999999 432 22222222 468999999999 998888887 898
Q ss_pred EEEEecCCCC---ceeccCCCCceEEEEEecCCCC-------CCCCcceEEEEcCCCcEEEEEEecCCcccceeeEEeee
Q 002318 92 TFYTHAKWSK---PRVLSKLKGLVVNAVAWNRQQI-------TEASTKEIILGTDTGQLHEMAVDEKDKREKYIKLLFEL 161 (936)
Q Consensus 92 ~~Y~~~~~~k---~k~L~klkg~~I~sVaw~~~~~-------~~~st~~iLiGt~~G~i~e~~i~~~~~~~~~~k~v~~l 161 (936)
...+...... ...+.. ....|.+++|++... ...+...++.|+.+|.|....+.... ...+.+..+
T Consensus 125 I~vwdl~~~~~~~~~~~~~-~~~~v~~l~~~p~~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~---~~~~~~~~~ 200 (753)
T 3jro_A 125 VSVVEFKENGTTSPIIIDA-HAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDA---QTYVLESTL 200 (753)
T ss_dssp EEEEECCSSSCCCCEEEEC-CSSCEEEEEECCCC---------CGGGCCEEEEETTSCEEEEEEETTT---TEEEEEEEE
T ss_pred EEEEEeecCCCcceeEeec-CCCceEEEEecCcccccccccccCCCCCEEEEEECCCeEEEEeccCCc---ccceeeeee
Confidence 8877765442 222222 345899999995310 00124579999999999998886542 122333344
Q ss_pred CCCCCceeeEEEEeeccCCCceEEEEEECCCeEEEEec
Q 002318 162 NELPEAFMGLQMETASLSNGTRYYVMAVTPTRLYSFTG 199 (936)
Q Consensus 162 ~~~~~~I~gi~~~~~~~~~~~~~~i~ast~~rly~f~~ 199 (936)
..-.++|+++.|.... ...++++.++....++-|.-
T Consensus 201 ~~h~~~V~~l~~sp~~--~~~~~l~s~s~Dg~I~iwd~ 236 (753)
T 3jro_A 201 EGHSDWVRDVAWSPTV--LLRSYLASVSQDRTCIIWTQ 236 (753)
T ss_dssp CCCSSCEEEEEECCCC--SSSEEEEEEESSSCEEEEEE
T ss_pred cCCCCcEEEEEeccCC--CCCCEEEEEecCCEEEEecC
Confidence 4334679999997310 00367777777777777753
No 47
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=97.41 E-value=0.01 Score=64.19 Aligned_cols=158 Identities=9% Similarity=-0.043 Sum_probs=108.1
Q ss_pred CCceeEEEEeC--CEEEEEecCCeEEEEeC-CCCCceeeEcCCCCCCccceeEEEeCCCCCeEEEEeecCCCccEEEEec
Q 002318 21 RGVITCMSAGN--DVIVLGTSKGWLIRHDF-GAGDSYDIDLSAGRPGEQSIHKVFVDPGGSHCIATIVGSGGAETFYTHA 97 (936)
Q Consensus 21 ~~~i~~l~v~~--n~l~l~~~~g~l~ridl-~~~~~~~~~l~~~~~~~~~i~~i~lDp~G~hlli~~~~~~~g~~~Y~~~ 97 (936)
.+.|++++.+. +.++-|-.+|+|..||+ .+..+..+.-+ ...|..+-++|.|.+++.++. +|....+..
T Consensus 65 ~~~v~~~~~s~dg~~l~s~s~D~~v~~wd~~~~~~~~~~~~h-----~~~v~~~~~~~~~~~l~s~s~---D~~i~vwd~ 136 (319)
T 3frx_A 65 SHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGH-----KSDVMSVDIDKKASMIISGSR---DKTIKVWTI 136 (319)
T ss_dssp SSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECC-----SSCEEEEEECTTSCEEEEEET---TSCEEEEET
T ss_pred cccEEEEEECCCCCEEEEEeCCCEEEEEECCCCCeeEEEccC-----CCcEEEEEEcCCCCEEEEEeC---CCeEEEEEC
Confidence 35688888875 48888999999999999 65555555544 467999999999999998888 898888876
Q ss_pred CCCCceeccCCCCceEEEEEecCCCCCCCCcceEEEEcCCCcEEEEEEecCCcccceeeEEeeeCCCCCceeeEEEEeec
Q 002318 98 KWSKPRVLSKLKGLVVNAVAWNRQQITEASTKEIILGTDTGQLHEMAVDEKDKREKYIKLLFELNELPEAFMGLQMETAS 177 (936)
Q Consensus 98 ~~~k~k~L~klkg~~I~sVaw~~~~~~~~st~~iLiGt~~G~i~e~~i~~~~~~~~~~k~v~~l~~~~~~I~gi~~~~~~ 177 (936)
.......+.. ....|.+++|.+......+...++.|+.+|.|....+... +....+.+-.++|.++.|..
T Consensus 137 ~~~~~~~~~~-h~~~v~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~-------~~~~~~~~h~~~v~~~~~sp-- 206 (319)
T 3frx_A 137 KGQCLATLLG-HNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQF-------QIEADFIGHNSNINTLTASP-- 206 (319)
T ss_dssp TSCEEEEECC-CSSCEEEEEECCC------CCEEEEEETTSCEEEEETTTT-------EEEEEECCCCSCEEEEEECT--
T ss_pred CCCeEEEEec-cCCcEEEEEEccCCCCCCCccEEEEEeCCCEEEEEECCcc-------hhheeecCCCCcEEEEEEcC--
Confidence 5543333322 2347999999854332223446888999999887766432 22223333236799998862
Q ss_pred cCCCceEEEEEECCCeEEEEec
Q 002318 178 LSNGTRYYVMAVTPTRLYSFTG 199 (936)
Q Consensus 178 ~~~~~~~~i~ast~~rly~f~~ 199 (936)
+.++++.++....+.-|.-
T Consensus 207 ---~g~~l~s~~~dg~i~iwd~ 225 (319)
T 3frx_A 207 ---DGTLIASAGKDGEIMLWNL 225 (319)
T ss_dssp ---TSSEEEEEETTCEEEEEET
T ss_pred ---CCCEEEEEeCCCeEEEEEC
Confidence 3357777777777887753
No 48
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=97.40 E-value=0.0063 Score=65.16 Aligned_cols=162 Identities=9% Similarity=0.043 Sum_probs=104.6
Q ss_pred CCCceeEEEEe----CCEEEEEecCCeEEEEeC-CCCCc------eee-EcCCCCCCccceeEEEeCCC--CCeEEEEee
Q 002318 20 GRGVITCMSAG----NDVIVLGTSKGWLIRHDF-GAGDS------YDI-DLSAGRPGEQSIHKVFVDPG--GSHCIATIV 85 (936)
Q Consensus 20 ~~~~i~~l~v~----~n~l~l~~~~g~l~ridl-~~~~~------~~~-~l~~~~~~~~~i~~i~lDp~--G~hlli~~~ 85 (936)
..+.|++++.+ ++.++.|..+|.|..||+ .+... ..+ .+. .....|..+-.+|. |.++++++.
T Consensus 56 ~~~~v~~~~~~~~~d~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~---~~~~~v~~~~~~~~~~~~~l~~~~~ 132 (351)
T 3f3f_A 56 HDSSIVAIDWASPEYGRIIASASYDKTVKLWEEDPDQEECSGRRWNKLCTLN---DSKGSLYSVKFAPAHLGLKLACLGN 132 (351)
T ss_dssp CSSCEEEEEECCGGGCSEEEEEETTSCEEEEEECTTSCTTSSCSEEEEEEEC---CCSSCEEEEEECCGGGCSEEEEEET
T ss_pred CCCcEEEEEEcCCCCCCEEEEEcCCCeEEEEecCCCcccccccCcceeeeec---ccCCceeEEEEcCCCCCcEEEEecC
Confidence 34579999997 578999999999999999 43211 111 111 12468999999999 999998887
Q ss_pred cCCCccEEEEecCCCCc-eecc------------CCCCceEEEEEecCCCCCCCCcceEEEEcCCCcEEEEEEecCCccc
Q 002318 86 GSGGAETFYTHAKWSKP-RVLS------------KLKGLVVNAVAWNRQQITEASTKEIILGTDTGQLHEMAVDEKDKRE 152 (936)
Q Consensus 86 ~~~~g~~~Y~~~~~~k~-k~L~------------klkg~~I~sVaw~~~~~~~~st~~iLiGt~~G~i~e~~i~~~~~~~ 152 (936)
+|....++....+. +.+. .-....+.+++|++... +...+++|+.+|.+........
T Consensus 133 ---dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~---~~~~l~~~~~~~~~~~~~~~~~---- 202 (351)
T 3f3f_A 133 ---DGILRLYDALEPSDLRSWTLTSEMKVLSIPPANHLQSDFCLSWCPSRF---SPEKLAVSALEQAIIYQRGKDG---- 202 (351)
T ss_dssp ---TCEEEEEECSSTTCTTCCEEEEEEESCSCCCSSCSCCCEEEEECCCSS---SCCEEEEEETTEEEEEEECTTS----
T ss_pred ---CCcEEEecCCChHHhccccccccccccccccCCcccceeEEEeccCCC---CCcEEEEecCCCcEEEEccCCC----
Confidence 89888877544321 1110 01335789999995422 2458899999997744332221
Q ss_pred ceeeEEeeeCCCCCceeeEEEEeeccCCC--ceEEEEEECCCeEEEEe
Q 002318 153 KYIKLLFELNELPEAFMGLQMETASLSNG--TRYYVMAVTPTRLYSFT 198 (936)
Q Consensus 153 ~~~k~v~~l~~~~~~I~gi~~~~~~~~~~--~~~~i~ast~~rly~f~ 198 (936)
..+.+..+..-.++|+++.|... +. .++++.++....++-|.
T Consensus 203 -~~~~~~~~~~h~~~i~~~~~~p~---~~~~~~~l~s~~~dg~i~iwd 246 (351)
T 3f3f_A 203 -KLHVAAKLPGHKSLIRSISWAPS---IGRWYQLIATGCKDGRIRIFK 246 (351)
T ss_dssp -CEEEEEECCCCCSCEEEEEECCC---SSCSSEEEEEEETTSCEEEEE
T ss_pred -ceeeeeecCCCCcceeEEEECCC---CCCcceEEEEEcCCCeEEEEe
Confidence 23334455443468999999731 11 15677777777677664
No 49
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=97.38 E-value=0.0047 Score=68.21 Aligned_cols=155 Identities=10% Similarity=0.148 Sum_probs=103.5
Q ss_pred CCceeEEEEeC--CEEEEEecCCeEEEEeC-CCCCceeeEcCCCCCCccceeEEEeCCCCCeEEEE-eecCCCccEEEEe
Q 002318 21 RGVITCMSAGN--DVIVLGTSKGWLIRHDF-GAGDSYDIDLSAGRPGEQSIHKVFVDPGGSHCIAT-IVGSGGAETFYTH 96 (936)
Q Consensus 21 ~~~i~~l~v~~--n~l~l~~~~g~l~ridl-~~~~~~~~~l~~~~~~~~~i~~i~lDp~G~hlli~-~~~~~~g~~~Y~~ 96 (936)
.+.|+|++++. +.++.|..+|.|..+|+ .+..+..+..+ ...|..+-+.|.|..++++ .. +|....++
T Consensus 139 ~~~V~~v~~spdg~~l~sgs~dg~v~iwd~~~~~~~~~~~~h-----~~~v~~v~~s~~~~~~~~s~~~---dg~v~~wd 210 (357)
T 4g56_B 139 DDIVKTLSVFSDGTQAVSGGKDFSVKVWDLSQKAVLKSYNAH-----SSEVNCVAACPGKDTIFLSCGE---DGRILLWD 210 (357)
T ss_dssp SSCEEEEEECSSSSEEEEEETTSCEEEEETTTTEEEEEECCC-----SSCEEEEEECTTCSSCEEEEET---TSCEEECC
T ss_pred CCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCC-----CCCEEEEEEccCCCceeeeecc---CCceEEEE
Confidence 35799999985 48899999999999999 55545545444 4679999999998765554 44 78887776
Q ss_pred cCCCCceeccCC--CCceEEEEEecCCCCCCCCcceEEEEcCCCcEEEEEEecCCcccceeeEEeeeCCCCCceeeEEEE
Q 002318 97 AKWSKPRVLSKL--KGLVVNAVAWNRQQITEASTKEIILGTDTGQLHEMAVDEKDKREKYIKLLFELNELPEAFMGLQME 174 (936)
Q Consensus 97 ~~~~k~k~L~kl--kg~~I~sVaw~~~~~~~~st~~iLiGt~~G~i~e~~i~~~~~~~~~~k~v~~l~~~~~~I~gi~~~ 174 (936)
....+......+ ....|.+|+|++.. ..-+..|+.+|.|....+... +..+ .+.....+|+++.|.
T Consensus 211 ~~~~~~~~~~~~~~~~~~v~~v~~sp~~-----~~~la~g~~d~~i~~wd~~~~----~~~~---~~~~~~~~v~~l~~s 278 (357)
T 4g56_B 211 TRKPKPATRIDFCASDTIPTSVTWHPEK-----DDTFACGDETGNVSLVNIKNP----DSAQ---TSAVHSQNITGLAYS 278 (357)
T ss_dssp TTSSSCBCBCCCTTCCSCEEEEEECTTS-----TTEEEEEESSSCEEEEESSCG----GGCE---EECCCSSCEEEEEEC
T ss_pred CCCCceeeeeeeccccccccchhhhhcc-----cceEEEeecccceeEEECCCC----cEeE---EEeccceeEEEEEEc
Confidence 655443222222 34579999998532 225677999999988776543 1122 233223679999986
Q ss_pred eeccCCCceEEEEEECCCeEEEEec
Q 002318 175 TASLSNGTRYYVMAVTPTRLYSFTG 199 (936)
Q Consensus 175 ~~~~~~~~~~~i~ast~~rly~f~~ 199 (936)
. ...++++-++....++-|.-
T Consensus 279 p----~~~~~lasgs~D~~i~iwd~ 299 (357)
T 4g56_B 279 Y----HSSPFLASISEDCTVAVLDA 299 (357)
T ss_dssp S----SSSCCEEEEETTSCEEEECT
T ss_pred C----CCCCEEEEEeCCCEEEEEEC
Confidence 3 22356666676777887753
No 50
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=97.37 E-value=0.082 Score=59.31 Aligned_cols=143 Identities=14% Similarity=0.149 Sum_probs=95.8
Q ss_pred eCCEEEEEecCCeEEEEeC-CCCCceeeEcCCCCCCccceeEEEeCCCCCeEEEEeecCCCccEEEEecCCCCc-eeccC
Q 002318 30 GNDVIVLGTSKGWLIRHDF-GAGDSYDIDLSAGRPGEQSIHKVFVDPGGSHCIATIVGSGGAETFYTHAKWSKP-RVLSK 107 (936)
Q Consensus 30 ~~n~l~l~~~~g~l~ridl-~~~~~~~~~l~~~~~~~~~i~~i~lDp~G~hlli~~~~~~~g~~~Y~~~~~~k~-k~L~k 107 (936)
++|+|++|+ +++|+.||. .+..+..+.++. ....|+.+-..|.|.++++++. +|....++....+. +.+.
T Consensus 115 ~~n~lAvgl-d~tV~lWd~~tg~~~~~~~~~~---~~~~V~sv~fspdg~~lasgs~---Dg~v~iWd~~~~~~~~~~~- 186 (420)
T 4gga_A 115 SGNVLAVAL-DNSVYLWSASSGDILQLLQMEQ---PGEYISSVAWIKEGNYLAVGTS---SAEVQLWDVQQQKRLRNMT- 186 (420)
T ss_dssp TTSEEEEEE-TTEEEEEETTTCCEEEEEECCS---TTCCEEEEEECTTSSEEEEEET---TSCEEEEETTTTEEEEEEC-
T ss_pred CCCEEEEEe-CCEEEEEECCCCCEEEEEEecC---CCCcEEEEEECCCCCEEEEEEC---CCeEEEEEcCCCcEEEEEe-
Confidence 467899998 679999999 555444455542 2467999999999999999988 89998888765532 2222
Q ss_pred CCCceEEEEEecCCCCCCCCcceEEEEcCCCcEEEEEEecCCcccceeeEEeeeCCCCCceeeEEEEeeccCCCceEEEE
Q 002318 108 LKGLVVNAVAWNRQQITEASTKEIILGTDTGQLHEMAVDEKDKREKYIKLLFELNELPEAFMGLQMETASLSNGTRYYVM 187 (936)
Q Consensus 108 lkg~~I~sVaw~~~~~~~~st~~iLiGt~~G~i~e~~i~~~~~~~~~~k~v~~l~~~~~~I~gi~~~~~~~~~~~~~~i~ 187 (936)
-....|.+++|+. .-++.|+.+|.+........ ...+. .+..-..++.++.+.. ..+.++.
T Consensus 187 ~h~~~v~~~s~~~--------~~l~sgs~d~~i~~~d~~~~---~~~~~---~~~~h~~~~~~~~~~~-----~g~~l~s 247 (420)
T 4gga_A 187 SHSARVGSLSWNS--------YILSSGSRSGHIHHHDVRVA---EHHVA---TLSGHSQEVCGLRWAP-----DGRHLAS 247 (420)
T ss_dssp CCSSCEEEEEEET--------TEEEEEETTSEEEEEETTSS---SCEEE---EEECCSSCEEEEEECT-----TSSEEEE
T ss_pred CCCCceEEEeeCC--------CEEEEEeCCCceeEeeeccc---ceeeE---EecccccceeeeeecC-----CCCeeee
Confidence 1335788999982 26777889998877655432 11122 2322235688888863 2356666
Q ss_pred EECCCeEEEEec
Q 002318 188 AVTPTRLYSFTG 199 (936)
Q Consensus 188 ast~~rly~f~~ 199 (936)
.+....+.-|..
T Consensus 248 ~~~D~~v~i~~~ 259 (420)
T 4gga_A 248 GGNDNLVNVWPS 259 (420)
T ss_dssp EETTSCEEEEES
T ss_pred eeccccceEEee
Confidence 666666766653
No 51
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=97.36 E-value=0.004 Score=73.40 Aligned_cols=160 Identities=12% Similarity=0.099 Sum_probs=107.6
Q ss_pred CCceeEEEEeCCEEEEEec-CCeEEEEeCCCCCceeeEcCCCCCCccceeEEEeCCCCCeEEEEeecCCCccEEEEecCC
Q 002318 21 RGVITCMSAGNDVIVLGTS-KGWLIRHDFGAGDSYDIDLSAGRPGEQSIHKVFVDPGGSHCIATIVGSGGAETFYTHAKW 99 (936)
Q Consensus 21 ~~~i~~l~v~~n~l~l~~~-~g~l~ridl~~~~~~~~~l~~~~~~~~~i~~i~lDp~G~hlli~~~~~~~g~~~Y~~~~~ 99 (936)
...+++++++++.++.|.. +|.|..+|+.........+. .....|..+-++|.|.++++++. +|..+.++...
T Consensus 446 ~~~~~~~~~~~~~l~~~~~~d~~i~~~~~~~~~~~~~~~~---~~~~~v~~~~~s~~g~~l~~~~~---dg~i~iw~~~~ 519 (615)
T 1pgu_A 446 NSPGSAVSLSQNYVAVGLEEGNTIQVFKLSDLEVSFDLKT---PLRAKPSYISISPSETYIAAGDV---MGKILLYDLQS 519 (615)
T ss_dssp SSCEEEEEECSSEEEEEETTTSCEEEEETTEEEEEEECSS---CCSSCEEEEEECTTSSEEEEEET---TSCEEEEETTT
T ss_pred CCCceEEEEcCCEEEEeecCCCeEEEEECCCccccccccC---CccCceEEEEECCCCCEEEEcCC---CCeEEEeeCCC
Confidence 3568999999999999999 99999999932222111121 12468999999999999999988 89998888765
Q ss_pred CCcee-ccCCCCceEEEEEecCCCC----CCCCcceEEEEcCCCcEEEEEEecCCcccceeeEEeeeCCCCCceeeEEEE
Q 002318 100 SKPRV-LSKLKGLVVNAVAWNRQQI----TEASTKEIILGTDTGQLHEMAVDEKDKREKYIKLLFELNELPEAFMGLQME 174 (936)
Q Consensus 100 ~k~k~-L~klkg~~I~sVaw~~~~~----~~~st~~iLiGt~~G~i~e~~i~~~~~~~~~~k~v~~l~~~~~~I~gi~~~ 174 (936)
.+... +.......|++++|++... ...+..-++.|+.+|.|+...+.... +.+..+..-.++|+++.|.
T Consensus 520 ~~~~~~~~~~h~~~v~~~~~sp~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~------~~~~~~~~h~~~v~~l~~s 593 (615)
T 1pgu_A 520 REVKTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPM------KIIKALNAHKDGVNNLLWE 593 (615)
T ss_dssp TEEEECCSCCCSSCEEEEEECCCC------CCSCCEEEEEETTSCEEEEESSCTT------CCEEETTSSTTCEEEEEEE
T ss_pred CcceeEeecCCCCceeEEEEcCccccccccccCCCEEEEEcCCCcEEEEECCCCc------eechhhhcCccceEEEEEc
Confidence 43322 2211346899999995110 00123478888999999998876531 1222233224679999998
Q ss_pred eeccCCCceEEEEEECCCeEEEEe
Q 002318 175 TASLSNGTRYYVMAVTPTRLYSFT 198 (936)
Q Consensus 175 ~~~~~~~~~~~i~ast~~rly~f~ 198 (936)
. +.+ ++.++....++.|.
T Consensus 594 ~-----~~~-l~s~~~d~~v~iw~ 611 (615)
T 1pgu_A 594 T-----PST-LVSSGADACIKRWN 611 (615)
T ss_dssp E-----TTE-EEEEETTSCEEEEE
T ss_pred C-----CCC-eEEecCCceEEEEe
Confidence 4 224 66666677777663
No 52
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=97.34 E-value=0.019 Score=62.11 Aligned_cols=165 Identities=11% Similarity=0.094 Sum_probs=107.5
Q ss_pred CCCceeEEEEe--------CCEEEEEecCCeEEEEeC-CCC-CceeeEcCCCCCCccceeEEE----eCCCCCeEEEEee
Q 002318 20 GRGVITCMSAG--------NDVIVLGTSKGWLIRHDF-GAG-DSYDIDLSAGRPGEQSIHKVF----VDPGGSHCIATIV 85 (936)
Q Consensus 20 ~~~~i~~l~v~--------~n~l~l~~~~g~l~ridl-~~~-~~~~~~l~~~~~~~~~i~~i~----lDp~G~hlli~~~ 85 (936)
..+.|++++.. ++.++.|..+|.|..+|+ .+. .+..+..+... ....|..+- ++|.|.++++++.
T Consensus 110 ~~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~l~~~~~ 188 (357)
T 3i2n_A 110 HKEIINAIDGIGGLGIGEGAPEIVTGSRDGTVKVWDPRQKDDPVANMEPVQGE-NKRDCWTVAFGNAYNQEERVVCAGYD 188 (357)
T ss_dssp CSSCEEEEEEESGGGCC-CCCEEEEEETTSCEEEECTTSCSSCSEEECCCTTS-CCCCEEEEEEECCCC-CCCEEEEEET
T ss_pred cccceEEEeeccccccCCCccEEEEEeCCCeEEEEeCCCCCCcceeccccCCC-CCCceEEEEEEeccCCCCCEEEEEcc
Confidence 34568888653 459999999999999999 554 45555444221 124677776 6799999999888
Q ss_pred cCCCccEEEEecCCCCceeccCCCCceEEEEEecCCCCCCCCcceEEEEcCCCcEEEEEEecCCcccceeeEEeeeCCCC
Q 002318 86 GSGGAETFYTHAKWSKPRVLSKLKGLVVNAVAWNRQQITEASTKEIILGTDTGQLHEMAVDEKDKREKYIKLLFELNELP 165 (936)
Q Consensus 86 ~~~~g~~~Y~~~~~~k~k~L~klkg~~I~sVaw~~~~~~~~st~~iLiGt~~G~i~e~~i~~~~~~~~~~k~v~~l~~~~ 165 (936)
+|..+.++....+...... ....|.+++|++.. .+...++.|+.+|.|....+.... ....+... .+....
T Consensus 189 ---d~~i~i~d~~~~~~~~~~~-~~~~v~~~~~~~~~---~~~~~l~~~~~dg~i~i~d~~~~~-~~~~~~~~-~~~~~~ 259 (357)
T 3i2n_A 189 ---NGDIKLFDLRNMALRWETN-IKNGVCSLEFDRKD---ISMNKLVATSLEGKFHVFDMRTQH-PTKGFASV-SEKAHK 259 (357)
T ss_dssp ---TSEEEEEETTTTEEEEEEE-CSSCEEEEEESCSS---SSCCEEEEEESTTEEEEEEEEEEE-TTTEEEEE-EEECCS
T ss_pred ---CCeEEEEECccCceeeecC-CCCceEEEEcCCCC---CCCCEEEEECCCCeEEEEeCcCCC-cccceeee-ccCCCc
Confidence 8999888877665544433 24589999999521 023478999999999888776531 11112111 222224
Q ss_pred CceeeEEEEeeccCCCceEEEEEECCCeEEEEe
Q 002318 166 EAFMGLQMETASLSNGTRYYVMAVTPTRLYSFT 198 (936)
Q Consensus 166 ~~I~gi~~~~~~~~~~~~~~i~ast~~rly~f~ 198 (936)
.+|+++.|.. ....+++.++....++-|.
T Consensus 260 ~~v~~~~~~~----~~~~~l~~~~~dg~i~iwd 288 (357)
T 3i2n_A 260 STVWQVRHLP----QNRELFLTAGGAGGLHLWK 288 (357)
T ss_dssp SCEEEEEEET----TEEEEEEEEETTSEEEEEE
T ss_pred CCEEEEEECC----CCCcEEEEEeCCCcEEEee
Confidence 6799999973 2222566666677777675
No 53
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=97.33 E-value=0.0095 Score=65.25 Aligned_cols=156 Identities=15% Similarity=0.113 Sum_probs=105.2
Q ss_pred ceeEEEEeC--CEEEEEecCCeEEEEeC-CCCCceeeEcCCCCCCccceeEEEeCCCCCeEEEEeecCCCccEEEEecCC
Q 002318 23 VITCMSAGN--DVIVLGTSKGWLIRHDF-GAGDSYDIDLSAGRPGEQSIHKVFVDPGGSHCIATIVGSGGAETFYTHAKW 99 (936)
Q Consensus 23 ~i~~l~v~~--n~l~l~~~~g~l~ridl-~~~~~~~~~l~~~~~~~~~i~~i~lDp~G~hlli~~~~~~~g~~~Y~~~~~ 99 (936)
.|.+++.+. +.|+.|-.+|+|..+|+ .........+... -...|..+-.+|.|.+++.++. +|....+....
T Consensus 18 ~v~~l~~sp~g~~las~~~D~~i~iw~~~~~~~~~~~~~~~~--h~~~v~~~~~sp~g~~l~s~s~---D~~v~iw~~~~ 92 (345)
T 3fm0_A 18 RCWFLAWNPAGTLLASCGGDRRIRIWGTEGDSWICKSVLSEG--HQRTVRKVAWSPCGNYLASASF---DATTCIWKKNQ 92 (345)
T ss_dssp CEEEEEECTTSSCEEEEETTSCEEEEEEETTEEEEEEEECSS--CSSCEEEEEECTTSSEEEEEET---TSCEEEEEECC
T ss_pred cEEEEEECCCCCEEEEEcCCCeEEEEEcCCCcceeeeeeccc--cCCcEEEEEECCCCCEEEEEEC---CCcEEEEEccC
Confidence 688888875 47888889999999999 4332222222211 2468999999999999999887 89887776655
Q ss_pred CCceeccCCCC--ceEEEEEecCCCCCCCCcceEEEEcCCCcEEEEEEecCCcccceeeEEeeeCCCCCceeeEEEEeec
Q 002318 100 SKPRVLSKLKG--LVVNAVAWNRQQITEASTKEIILGTDTGQLHEMAVDEKDKREKYIKLLFELNELPEAFMGLQMETAS 177 (936)
Q Consensus 100 ~k~k~L~klkg--~~I~sVaw~~~~~~~~st~~iLiGt~~G~i~e~~i~~~~~~~~~~k~v~~l~~~~~~I~gi~~~~~~ 177 (936)
...+.+..++| ..|.+|+|++. ...++.|+.+|.|....+.... ..+.+..+..-..+|+.+.|..
T Consensus 93 ~~~~~~~~~~~h~~~v~~v~~sp~------~~~l~s~s~D~~v~iwd~~~~~----~~~~~~~~~~h~~~v~~~~~~p-- 160 (345)
T 3fm0_A 93 DDFECVTTLEGHENEVKSVAWAPS------GNLLATCSRDKSVWVWEVDEED----EYECVSVLNSHTQDVKHVVWHP-- 160 (345)
T ss_dssp C-EEEEEEECCCSSCEEEEEECTT------SSEEEEEETTSCEEEEEECTTS----CEEEEEEECCCCSCEEEEEECS--
T ss_pred CCeEEEEEccCCCCCceEEEEeCC------CCEEEEEECCCeEEEEECCCCC----CeEEEEEecCcCCCeEEEEECC--
Confidence 44444444455 47999999943 2378889999999988876431 1222323333236799999863
Q ss_pred cCCCceEEEEEECCCeEEEEe
Q 002318 178 LSNGTRYYVMAVTPTRLYSFT 198 (936)
Q Consensus 178 ~~~~~~~~i~ast~~rly~f~ 198 (936)
+.++++.++....+.-|.
T Consensus 161 ---~~~~l~s~s~d~~i~~w~ 178 (345)
T 3fm0_A 161 ---SQELLASASYDDTVKLYR 178 (345)
T ss_dssp ---SSSCEEEEETTSCEEEEE
T ss_pred ---CCCEEEEEeCCCcEEEEE
Confidence 235677777666565554
No 54
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=97.32 E-value=0.0059 Score=66.19 Aligned_cols=157 Identities=11% Similarity=0.069 Sum_probs=102.5
Q ss_pred ceeEEE------EeCCEEEEEecCCeEEEEeC-CCCCceeeEcCCCCCCccceeEEEeCC---CCCeEEEEeecCCCccE
Q 002318 23 VITCMS------AGNDVIVLGTSKGWLIRHDF-GAGDSYDIDLSAGRPGEQSIHKVFVDP---GGSHCIATIVGSGGAET 92 (936)
Q Consensus 23 ~i~~l~------v~~n~l~l~~~~g~l~ridl-~~~~~~~~~l~~~~~~~~~i~~i~lDp---~G~hlli~~~~~~~g~~ 92 (936)
.+.+++ -.++.++.|..+|.|..+|+ .+.... ..-+ ...|..+-++| .|..+++++. +|..
T Consensus 166 ~v~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~-~~~~-----~~~v~~~~~~~~~~~~~~l~~~~~---dg~i 236 (357)
T 3i2n_A 166 DCWTVAFGNAYNQEERVVCAGYDNGDIKLFDLRNMALRW-ETNI-----KNGVCSLEFDRKDISMNKLVATSL---EGKF 236 (357)
T ss_dssp CEEEEEEECCCC-CCCEEEEEETTSEEEEEETTTTEEEE-EEEC-----SSCEEEEEESCSSSSCCEEEEEES---TTEE
T ss_pred ceEEEEEEeccCCCCCEEEEEccCCeEEEEECccCceee-ecCC-----CCceEEEEcCCCCCCCCEEEEECC---CCeE
Confidence 678887 46789999999999999999 443322 2111 35799999999 8999999887 8888
Q ss_pred EEEecCCCC-ceecc--C--CCCceEEEEEecCCCCCCCCcceEEEEcCCCcEEEEEEecCCcc------------ccee
Q 002318 93 FYTHAKWSK-PRVLS--K--LKGLVVNAVAWNRQQITEASTKEIILGTDTGQLHEMAVDEKDKR------------EKYI 155 (936)
Q Consensus 93 ~Y~~~~~~k-~k~L~--k--lkg~~I~sVaw~~~~~~~~st~~iLiGt~~G~i~e~~i~~~~~~------------~~~~ 155 (936)
+.++....+ .+.+. . -....|.+++|++. ...-++.|+.+|.|....+...... ....
T Consensus 237 ~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-----~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~g~~~~~~~~~ 311 (357)
T 3i2n_A 237 HVFDMRTQHPTKGFASVSEKAHKSTVWQVRHLPQ-----NRELFLTAGGAGGLHLWKYEYPIQRSKKDSEGIEMGVAGSV 311 (357)
T ss_dssp EEEEEEEEETTTEEEEEEEECCSSCEEEEEEETT-----EEEEEEEEETTSEEEEEEEECCSCC--CCTTSCCCCCCCEE
T ss_pred EEEeCcCCCcccceeeeccCCCcCCEEEEEECCC-----CCcEEEEEeCCCcEEEeecCCCcccccccCCCCcccccccc
Confidence 766643322 11111 1 23458999999942 1124788899999988887643111 0122
Q ss_pred eEEeeeCCCCCceeeEEEEeeccCCCceEEE-EEECCCeEEEEe
Q 002318 156 KLLFELNELPEAFMGLQMETASLSNGTRYYV-MAVTPTRLYSFT 198 (936)
Q Consensus 156 k~v~~l~~~~~~I~gi~~~~~~~~~~~~~~i-~ast~~rly~f~ 198 (936)
+.+..+..-.++|+++.|.. +.++++ -++....++-|.
T Consensus 312 ~~~~~~~~~~~~v~~~~~s~-----~~~~l~~s~~~d~~i~iw~ 350 (357)
T 3i2n_A 312 SLLQNVTLSTQPISSLDWSP-----DKRGLCVCSSFDQTVRVLI 350 (357)
T ss_dssp EEEEEEECCSSCEEEEEECS-----SSTTEEEEEETTSEEEEEE
T ss_pred ceeeccccCCCCeeEEEEcC-----CCCeEEEEecCCCcEEEEE
Confidence 44444544347899999973 224555 356577777774
No 55
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=97.31 E-value=0.047 Score=70.60 Aligned_cols=153 Identities=9% Similarity=-0.004 Sum_probs=109.8
Q ss_pred CCceeEEEEeCC--EEEEEecCCeEEEEeC-CCCCceeeEcCCCCCCccceeEEEeCCCCCeEEEEeecCCCccEEEEec
Q 002318 21 RGVITCMSAGND--VIVLGTSKGWLIRHDF-GAGDSYDIDLSAGRPGEQSIHKVFVDPGGSHCIATIVGSGGAETFYTHA 97 (936)
Q Consensus 21 ~~~i~~l~v~~n--~l~l~~~~g~l~ridl-~~~~~~~~~l~~~~~~~~~i~~i~lDp~G~hlli~~~~~~~g~~~Y~~~ 97 (936)
.+.|+|++++.+ .++.|..+|+|..||+ ....+..+.-+ ...|..+-++|.|..+++++. +|....++.
T Consensus 615 ~~~v~~~~~s~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~h-----~~~v~~~~~s~~~~~l~s~~~---d~~v~vwd~ 686 (1249)
T 3sfz_A 615 TDAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLLDIKAH-----EDEVLCCAFSSDDSYIATCSA---DKKVKIWDS 686 (1249)
T ss_dssp SSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCC-----SSCEEEEEECTTSSEEEEEET---TSEEEEEET
T ss_pred cccEEEEEECCCCCEEEEEeCCCeEEEEECCCCCEEEEeccC-----CCCEEEEEEecCCCEEEEEeC---CCeEEEEEC
Confidence 467999999765 8888899999999999 65555555433 468999999999999998887 899988887
Q ss_pred CCCCce-eccCCCCceEEEEEecCCCCCCCCcceEEEEcCCCcEEEEEEecCCcccceeeEEeeeCCCCCceeeEEEEee
Q 002318 98 KWSKPR-VLSKLKGLVVNAVAWNRQQITEASTKEIILGTDTGQLHEMAVDEKDKREKYIKLLFELNELPEAFMGLQMETA 176 (936)
Q Consensus 98 ~~~k~k-~L~klkg~~I~sVaw~~~~~~~~st~~iLiGt~~G~i~e~~i~~~~~~~~~~k~v~~l~~~~~~I~gi~~~~~ 176 (936)
...+.. .+. ..+..|.+++|.+.. +..-++.|+.+|.|....+..+ +.+..+..-.++|+++.|..
T Consensus 687 ~~~~~~~~~~-~~~~~v~~~~~~~~~----~~~~l~sg~~d~~v~vwd~~~~-------~~~~~~~~h~~~v~~~~~sp- 753 (1249)
T 3sfz_A 687 ATGKLVHTYD-EHSEQVNCCHFTNKS----NHLLLATGSNDFFLKLWDLNQK-------ECRNTMFGHTNSVNHCRFSP- 753 (1249)
T ss_dssp TTCCEEEEEE-CCSSCEEEEEECSSS----SCCEEEEEETTSCEEEEETTSS-------SEEEEECCCSSCEEEEEECS-
T ss_pred CCCceEEEEc-CCCCcEEEEEEecCC----CceEEEEEeCCCeEEEEECCCc-------chhheecCCCCCEEEEEEec-
Confidence 665432 232 234589999998431 2335677889999988776543 12223333346799999873
Q ss_pred ccCCCceEEEEEECCCeEEEEe
Q 002318 177 SLSNGTRYYVMAVTPTRLYSFT 198 (936)
Q Consensus 177 ~~~~~~~~~i~ast~~rly~f~ 198 (936)
+.+.++.++....+.-|.
T Consensus 754 ----~~~~l~s~s~dg~v~vwd 771 (1249)
T 3sfz_A 754 ----DDELLASCSADGTLRLWD 771 (1249)
T ss_dssp ----STTEEEEEESSSEEEEEE
T ss_pred ----CCCEEEEEECCCeEEEEe
Confidence 235777777777788775
No 56
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=97.30 E-value=0.0046 Score=68.12 Aligned_cols=161 Identities=9% Similarity=-0.000 Sum_probs=102.2
Q ss_pred CCCceeEEEEeC--CEEEEEecCCeEEEEeC-CCCCcee-eEcCCCCCCccceeEEEeCCCCCeEEEEeecCCCccEEEE
Q 002318 20 GRGVITCMSAGN--DVIVLGTSKGWLIRHDF-GAGDSYD-IDLSAGRPGEQSIHKVFVDPGGSHCIATIVGSGGAETFYT 95 (936)
Q Consensus 20 ~~~~i~~l~v~~--n~l~l~~~~g~l~ridl-~~~~~~~-~~l~~~~~~~~~i~~i~lDp~G~hlli~~~~~~~g~~~Y~ 95 (936)
..+.|++++.+. +.++.|..+|.|..+|+ .+..... ..+. .....|..+-..|.|.++++++. +|....+
T Consensus 54 h~~~v~~~~~s~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~~~---~~~~~v~~~~~~~~~~~l~~~~~---d~~i~iw 127 (377)
T 3dwl_C 54 HDKIVTCVDWAPKSNRIVTCSQDRNAYVYEKRPDGTWKQTLVLL---RLNRAATFVRWSPNEDKFAVGSG---ARVISVC 127 (377)
T ss_dssp CSSCEEEEEECTTTCCEEEEETTSSEEEC------CCCCEEECC---CCSSCEEEEECCTTSSCCEEEES---SSCEEEC
T ss_pred CCceEEEEEEeCCCCEEEEEeCCCeEEEEEcCCCCceeeeeEec---ccCCceEEEEECCCCCEEEEEec---CCeEEEE
Confidence 346799999985 58899999999999999 4441111 1121 11468999999999999999888 8888776
Q ss_pred ecCCCC----ceeccCCCCceEEEEEecCCCCCCCCcceEEEEcCCCcEEEEEEecCCcc-----------cceeeEEee
Q 002318 96 HAKWSK----PRVLSKLKGLVVNAVAWNRQQITEASTKEIILGTDTGQLHEMAVDEKDKR-----------EKYIKLLFE 160 (936)
Q Consensus 96 ~~~~~k----~k~L~klkg~~I~sVaw~~~~~~~~st~~iLiGt~~G~i~e~~i~~~~~~-----------~~~~k~v~~ 160 (936)
+....+ .+.+..-....|.+++|++. ...++.|+.+|.|....+...+.. .+.-+.+..
T Consensus 128 d~~~~~~~~~~~~~~~~h~~~v~~~~~~~~------~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 201 (377)
T 3dwl_C 128 YFEQENDWWVSKHLKRPLRSTILSLDWHPN------NVLLAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAE 201 (377)
T ss_dssp CC-----CCCCEEECSSCCSCEEEEEECTT------SSEEEEEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEEC
T ss_pred EECCcccceeeeEeecccCCCeEEEEEcCC------CCEEEEEeCCCEEEEEEEEecccCCCccccccccccchhhhhhc
Confidence 654443 44554323458999999942 237888999999988887532100 011223333
Q ss_pred eCCCCCceeeEEEEeeccCCCceEEEEEECCCeEEEEe
Q 002318 161 LNELPEAFMGLQMETASLSNGTRYYVMAVTPTRLYSFT 198 (936)
Q Consensus 161 l~~~~~~I~gi~~~~~~~~~~~~~~i~ast~~rly~f~ 198 (936)
+ .-.++|+++.|.. +.++++.++....++-|.
T Consensus 202 ~-~~~~~v~~~~~sp-----~~~~l~~~~~d~~i~iwd 233 (377)
T 3dwl_C 202 Y-PSGGWVHAVGFSP-----SGNALAYAGHDSSVTIAY 233 (377)
T ss_dssp C-CCSSSEEEEEECT-----TSSCEEEEETTTEEC-CE
T ss_pred c-cCCceEEEEEECC-----CCCEEEEEeCCCcEEEEE
Confidence 3 3246799999863 235777777777676564
No 57
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=97.27 E-value=0.19 Score=53.55 Aligned_cols=161 Identities=12% Similarity=0.064 Sum_probs=102.4
Q ss_pred CCceeEEEEe---CCEEEEEecCCeEEEEeC-CCCCceeeEcCCCCCCccceeEEEeCCCCCeEEEEeecCCCccEEEEe
Q 002318 21 RGVITCMSAG---NDVIVLGTSKGWLIRHDF-GAGDSYDIDLSAGRPGEQSIHKVFVDPGGSHCIATIVGSGGAETFYTH 96 (936)
Q Consensus 21 ~~~i~~l~v~---~n~l~l~~~~g~l~ridl-~~~~~~~~~l~~~~~~~~~i~~i~lDp~G~hlli~~~~~~~g~~~Y~~ 96 (936)
.+.|+|++++ +++|+-|-.+|+|..||+ .++......+..-..-...|..+.++|.|.+++.+.. +|....+.
T Consensus 38 ~~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~~~~~~~l~~h~~~V~~~~~s~dg~~l~s~~~---d~~i~~~~ 114 (340)
T 4aow_A 38 NGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQFALSGSW---DGTLRLWD 114 (340)
T ss_dssp SSCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSCSEEEEEEECCCSSCEEEEEECTTSSEEEEEET---TSEEEEEE
T ss_pred cCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcccceeeEEEeCCCCCEEEEEECCCCCEEEEEcc---cccceEEe
Confidence 4679999998 357888889999999999 4433222222111111468999999999999998887 89888777
Q ss_pred cCCCCceeccCCCCceEEEEEecCCCCCCCCcceEEEEcCCCcEEEEEEecCCcccceeeEEeeeCCCCCceeeEEEEee
Q 002318 97 AKWSKPRVLSKLKGLVVNAVAWNRQQITEASTKEIILGTDTGQLHEMAVDEKDKREKYIKLLFELNELPEAFMGLQMETA 176 (936)
Q Consensus 97 ~~~~k~k~L~klkg~~I~sVaw~~~~~~~~st~~iLiGt~~G~i~e~~i~~~~~~~~~~k~v~~l~~~~~~I~gi~~~~~ 176 (936)
................+.++.|.+. ...++.|+.+|.+....+... .+....+..-..+|..+.+...
T Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~------~~~l~s~s~d~~~~~~d~~~~------~~~~~~~~~~~~~v~~~~~~~~ 182 (340)
T 4aow_A 115 LTTGTTTRRFVGHTKDVLSVAFSSD------NRQIVSGSRDKTIKLWNTLGV------CKYTVQDESHSEWVSCVRFSPN 182 (340)
T ss_dssp TTTTEEEEEEECCSSCEEEEEECTT------SSCEEEEETTSCEEEECTTSC------EEEEECSSSCSSCEEEEEECSC
T ss_pred ecccceeeeecCCCCceeEEEEeec------CccceeecCCCeEEEEEeCCC------ceEEEEeccccCcccceEEccC
Confidence 6665444433334567778888732 237888999998876544321 2222233322356888877532
Q ss_pred ccCCCceEEEEEECCCeEEEEec
Q 002318 177 SLSNGTRYYVMAVTPTRLYSFTG 199 (936)
Q Consensus 177 ~~~~~~~~~i~ast~~rly~f~~ 199 (936)
+...+++-++....+..|.-
T Consensus 183 ---~~~~~~~s~~~d~~i~i~d~ 202 (340)
T 4aow_A 183 ---SSNPIIVSCGWDKLVKVWNL 202 (340)
T ss_dssp ---SSSCEEEEEETTSCEEEEET
T ss_pred ---CCCcEEEEEcCCCEEEEEEC
Confidence 22334555555666766643
No 58
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=97.27 E-value=0.0011 Score=73.03 Aligned_cols=154 Identities=10% Similarity=0.099 Sum_probs=99.9
Q ss_pred CCceeEEEEe--CCEEEEEecCCeEEEEeC-CC--CCceeeEcCCCCCCccceeEEEeCCCCCeEEEEeecCCCccEEEE
Q 002318 21 RGVITCMSAG--NDVIVLGTSKGWLIRHDF-GA--GDSYDIDLSAGRPGEQSIHKVFVDPGGSHCIATIVGSGGAETFYT 95 (936)
Q Consensus 21 ~~~i~~l~v~--~n~l~l~~~~g~l~ridl-~~--~~~~~~~l~~~~~~~~~i~~i~lDp~G~hlli~~~~~~~g~~~Y~ 95 (936)
.+.|+|++.+ ++.++.|..+|.|..+|+ .. ..+..+.-+ ...|..+-..|.|.+++.++. +|....+
T Consensus 11 ~~~v~~~~~s~~g~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~h-----~~~v~~~~~s~~~~~l~s~s~---d~~v~vw 82 (377)
T 3dwl_C 11 PKPSYEHAFNSQRTEFVTTTATNQVELYEQDGNGWKHARTFSDH-----DKIVTCVDWAPKSNRIVTCSQ---DRNAYVY 82 (377)
T ss_dssp SSCCSCCEECSSSSEEECCCSSSCBCEEEEETTEEEECCCBCCC-----SSCEEEEEECTTTCCEEEEET---TSSEEEC
T ss_pred CCcEEEEEECCCCCEEEEecCCCEEEEEEccCCceEEEEEEecC-----CceEEEEEEeCCCCEEEEEeC---CCeEEEE
Confidence 3568999998 558888888999999999 43 222222222 468999999999999998887 8988777
Q ss_pred ecCCCC----ceeccCCCCceEEEEEecCCCCCCCCcceEEEEcCCCcEEEEEEecCCcccceeeEEeeeCC-CCCceee
Q 002318 96 HAKWSK----PRVLSKLKGLVVNAVAWNRQQITEASTKEIILGTDTGQLHEMAVDEKDKREKYIKLLFELNE-LPEAFMG 170 (936)
Q Consensus 96 ~~~~~k----~k~L~klkg~~I~sVaw~~~~~~~~st~~iLiGt~~G~i~e~~i~~~~~~~~~~k~v~~l~~-~~~~I~g 170 (936)
+....+ ...+.. ....|.+++|++. ...++.|+.+|.|....+..... ....+. +.. -.++|++
T Consensus 83 d~~~~~~~~~~~~~~~-~~~~v~~~~~~~~------~~~l~~~~~d~~i~iwd~~~~~~-~~~~~~---~~~~h~~~v~~ 151 (377)
T 3dwl_C 83 EKRPDGTWKQTLVLLR-LNRAATFVRWSPN------EDKFAVGSGARVISVCYFEQEND-WWVSKH---LKRPLRSTILS 151 (377)
T ss_dssp ------CCCCEEECCC-CSSCEEEEECCTT------SSCCEEEESSSCEEECCC------CCCCEE---ECSSCCSCEEE
T ss_pred EcCCCCceeeeeEecc-cCCceEEEEECCC------CCEEEEEecCCeEEEEEECCccc-ceeeeE---eecccCCCeEE
Confidence 765443 223332 3458999999942 23788999999988776654311 001222 222 2367999
Q ss_pred EEEEeeccCCCceEEEEEECCCeEEEEe
Q 002318 171 LQMETASLSNGTRYYVMAVTPTRLYSFT 198 (936)
Q Consensus 171 i~~~~~~~~~~~~~~i~ast~~rly~f~ 198 (936)
+.|.. +.++++.++....++-|.
T Consensus 152 ~~~~~-----~~~~l~~~~~d~~i~iwd 174 (377)
T 3dwl_C 152 LDWHP-----NNVLLAAGCADRKAYVLS 174 (377)
T ss_dssp EEECT-----TSSEEEEEESSSCEEEEE
T ss_pred EEEcC-----CCCEEEEEeCCCEEEEEE
Confidence 99973 335777777777677665
No 59
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=97.26 E-value=0.15 Score=59.49 Aligned_cols=216 Identities=15% Similarity=0.093 Sum_probs=122.6
Q ss_pred HHHHHHHHHcCChhHHHHHHHhh--------hhHHHHHHHHHhcccHHHHHHHHhCC----CCchhhHHhhHHHHHh-HC
Q 002318 512 ATTMKLLESYGRVEELVFFASLK--------EQHEIVVHHYIQQGEAKKALQMLRKP----AVPIDLQYKFAPDLIM-LD 578 (936)
Q Consensus 512 ~tv~~ll~~~g~~e~~l~~a~~~--------~dy~~ll~~yi~~~~~~~AL~~L~~~----~d~~~li~k~~~~Ll~-~~ 578 (936)
.....++...|+.++++.+.+.. .-+..+...|...|++++|++++.+. ++....+...+..+.. ..
T Consensus 343 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 422 (597)
T 2xpi_A 343 PLHLASLHESGEKNKLYLISNDLVDRHPEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGE 422 (597)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHCTTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Confidence 34556677789998888877643 23455678889999999999988753 2223444555554443 56
Q ss_pred hHHHHHHHHccCCCCCCcchh--Hh-hhcCCCCCCCCChHHHHHHHHHHHhhcCCCCHhHHHHHHHHhhcCCChHHHHHH
Q 002318 579 AYETVESWMTTNNLNPRKLIP--AM-MRYSSEPHAKNETHEVIKYLEFCVHRLHNEDPGVHNLLLSLYAKQEDDSALLRF 655 (936)
Q Consensus 579 p~~ti~ll~~~~~ld~~~li~--~L-~~~~~~~~~~~~~~~~~~YLe~li~~~~~~~~~~hn~ll~Ly~~~~~~~~Ll~f 655 (936)
++++++.+.+...++|..... .+ ..|.. ....+.+..+++..+...+ .++..++.+..+|.+.++.++.+.+
T Consensus 423 ~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~ 497 (597)
T 2xpi_A 423 HDQAISAYTTAARLFQGTHLPYLFLGMQHMQ----LGNILLANEYLQSSYALFQ-YDPLLLNELGVVAFNKSDMQTAINH 497 (597)
T ss_dssp HHHHHHHHHHHHHTTTTCSHHHHHHHHHHHH----HTCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHhCccchHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHhCCHHHHHHH
Confidence 777887775432333332111 11 11110 0135678888888876544 4678888899999887665666666
Q ss_pred HHHhhCCCCCCCCcccCChHHHHHHHHhcCcceeeehhhhccccHHHHHHHHHhcCHHHHHHHhhccCCCHHHHHHHHHH
Q 002318 656 LQCKFGKGRENGPEFFYDPKYALRLCLKEKRMRACVHIYGMMSMHEEAVALALQVDPELAMAEADKVEDDEDLRKKLWLM 735 (936)
Q Consensus 656 L~~~~~~~~~~~~~~~yd~~~aLrlc~~~~~~~~~v~L~~~~g~~~eAl~l~l~~di~lA~~~a~~~~~d~~~~kkLWl~ 735 (936)
++..... .+....+++... ..+...+.+|.+.|++++|+..+-+ |.+. .+ ++.. .|..
T Consensus 498 ~~~~~~~----~~~~~~~p~~~~------~~~~~l~~~~~~~g~~~~A~~~~~~-----~~~~--~p-~~~~----~~~~ 555 (597)
T 2xpi_A 498 FQNALLL----VKKTQSNEKPWA------ATWANLGHAYRKLKMYDAAIDALNQ-----GLLL--ST-NDAN----VHTA 555 (597)
T ss_dssp HHHHHHH----HHHSCCCSGGGH------HHHHHHHHHHHHTTCHHHHHHHHHH-----HHHH--SS-CCHH----HHHH
T ss_pred HHHHHHh----hhccccchhhHH------HHHHHHHHHHHHhcCHHHHHHHHHH-----HHHh--CC-CChH----HHHH
Confidence 6553000 000011222100 0112244667888888888876643 2221 12 2343 7777
Q ss_pred HHHHHhhcccCCChHhHHHHHHHHH
Q 002318 736 VAKHVIEQEKGTKRENIRKAIAFLK 760 (936)
Q Consensus 736 ll~~~i~~~~~~~~~~i~~~l~~L~ 760 (936)
++...... ++.+++.+.++
T Consensus 556 l~~~~~~~------g~~~~A~~~~~ 574 (597)
T 2xpi_A 556 IALVYLHK------KIPGLAITHLH 574 (597)
T ss_dssp HHHHHHHT------TCHHHHHHHHH
T ss_pred HHHHHHHh------CCHHHHHHHHH
Confidence 77777665 34556665553
No 60
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=97.26 E-value=0.012 Score=66.67 Aligned_cols=149 Identities=9% Similarity=0.001 Sum_probs=103.8
Q ss_pred CceeEEEEeCCEEEEEecCCeEEEEeC-CCCCceeeEcCCCCCCccceeEEEeCCCCCeEEEEeecCCCccEEEEecCCC
Q 002318 22 GVITCMSAGNDVIVLGTSKGWLIRHDF-GAGDSYDIDLSAGRPGEQSIHKVFVDPGGSHCIATIVGSGGAETFYTHAKWS 100 (936)
Q Consensus 22 ~~i~~l~v~~n~l~l~~~~g~l~ridl-~~~~~~~~~l~~~~~~~~~i~~i~lDp~G~hlli~~~~~~~g~~~Y~~~~~~ 100 (936)
+.|+|++..++.++.|..+|.|..+|+ .+..+..+.-+ ...|..+-. .|..+++++. +|....++....
T Consensus 134 ~~v~~~~~d~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h-----~~~v~~l~~--~~~~l~sg~~---dg~i~vwd~~~~ 203 (435)
T 1p22_A 134 KGVYCLQYDDQKIVSGLRDNTIKIWDKNTLECKRILTGH-----TGSVLCLQY--DERVIITGSS---DSTVRVWDVNTG 203 (435)
T ss_dssp CCEEEEECCSSEEEEEESSSCEEEEESSSCCEEEEECCC-----SSCEEEEEC--CSSEEEEEET---TSCEEEEESSSC
T ss_pred CcEEEEEECCCEEEEEeCCCeEEEEeCCCCeEEEEEcCC-----CCcEEEEEE--CCCEEEEEcC---CCeEEEEECCCC
Confidence 458999999999999999999999999 55444444333 356777766 5778888777 899988887655
Q ss_pred CceeccCCCCceEEEEEecCCCCCCCCcceEEEEcCCCcEEEEEEecCCcccceeeEEeeeCCCCCceeeEEEEeeccCC
Q 002318 101 KPRVLSKLKGLVVNAVAWNRQQITEASTKEIILGTDTGQLHEMAVDEKDKREKYIKLLFELNELPEAFMGLQMETASLSN 180 (936)
Q Consensus 101 k~k~L~klkg~~I~sVaw~~~~~~~~st~~iLiGt~~G~i~e~~i~~~~~~~~~~k~v~~l~~~~~~I~gi~~~~~~~~~ 180 (936)
+...--+.....|.+++|++ +.++.|+.+|.|....+.... ...... .+.+..++|+++.+. +
T Consensus 204 ~~~~~~~~h~~~v~~l~~~~--------~~l~s~s~dg~i~vwd~~~~~--~~~~~~--~~~~~~~~v~~~~~~-----~ 266 (435)
T 1p22_A 204 EMLNTLIHHCEAVLHLRFNN--------GMMVTCSKDRSIAVWDMASPT--DITLRR--VLVGHRAAVNVVDFD-----D 266 (435)
T ss_dssp CEEEEECCCCSCEEEEECCT--------TEEEEEETTSCEEEEECSSSS--CCEEEE--EECCCSSCEEEEEEE-----T
T ss_pred cEEEEEcCCCCcEEEEEEcC--------CEEEEeeCCCcEEEEeCCCCC--Cceeee--EecCCCCcEEEEEeC-----C
Confidence 43221122345899999972 279999999999988776531 111112 222223679999984 2
Q ss_pred CceEEEEEECCCeEEEEec
Q 002318 181 GTRYYVMAVTPTRLYSFTG 199 (936)
Q Consensus 181 ~~~~~i~ast~~rly~f~~ 199 (936)
+.++.++....+.-|.-
T Consensus 267 --~~l~s~~~dg~i~vwd~ 283 (435)
T 1p22_A 267 --KYIVSASGDRTIKVWNT 283 (435)
T ss_dssp --TEEEEEETTSEEEEEET
T ss_pred --CEEEEEeCCCeEEEEEC
Confidence 57777777888887753
No 61
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=97.26 E-value=0.0069 Score=65.36 Aligned_cols=152 Identities=13% Similarity=0.106 Sum_probs=104.3
Q ss_pred CCceeEEEEe--CC-EEEEEecCCeEEEEeC-CCCCceeeEcCCCCCCccceeEEEeCCCCCeEEEEeecCCCccEEEEe
Q 002318 21 RGVITCMSAG--ND-VIVLGTSKGWLIRHDF-GAGDSYDIDLSAGRPGEQSIHKVFVDPGGSHCIATIVGSGGAETFYTH 96 (936)
Q Consensus 21 ~~~i~~l~v~--~n-~l~l~~~~g~l~ridl-~~~~~~~~~l~~~~~~~~~i~~i~lDp~G~hlli~~~~~~~g~~~Y~~ 96 (936)
.+.|++++.+ ++ .++.|..+|.|..||+ .......+.-. .....|..+...| |..++.++. +|....++
T Consensus 56 ~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~---~~~~~v~~l~~~~-~~~l~s~~~---d~~i~iwd 128 (342)
T 1yfq_A 56 KHPLLCCNFIDNTDLQIYVGTVQGEILKVDLIGSPSFQALTNN---EANLGICRICKYG-DDKLIAASW---DGLIEVID 128 (342)
T ss_dssp SSCEEEEEEEESSSEEEEEEETTSCEEEECSSSSSSEEECBSC---CCCSCEEEEEEET-TTEEEEEET---TSEEEEEC
T ss_pred CCceEEEEECCCCCcEEEEEcCCCeEEEEEeccCCceEecccc---CCCCceEEEEeCC-CCEEEEEcC---CCeEEEEc
Confidence 4579999997 45 8999999999999999 77766444330 0146899999999 988888887 88888777
Q ss_pred cCC---------CC-ceeccCCCCceEEEEEecCCCCCCCCcceEEEEcCCCcEEEEEEec-CCcccceeeEEeeeCCCC
Q 002318 97 AKW---------SK-PRVLSKLKGLVVNAVAWNRQQITEASTKEIILGTDTGQLHEMAVDE-KDKREKYIKLLFELNELP 165 (936)
Q Consensus 97 ~~~---------~k-~k~L~klkg~~I~sVaw~~~~~~~~st~~iLiGt~~G~i~e~~i~~-~~~~~~~~k~v~~l~~~~ 165 (936)
... .+ .+.+. ....|.+++|++. .+++|+.+|.|....+.. .. ...+.. ..+ .+
T Consensus 129 ~~~~~~~~~~~~~~~~~~~~--~~~~v~~~~~~~~--------~l~~~~~d~~i~i~d~~~~~~---~~~~~~-~~~-~~ 193 (342)
T 1yfq_A 129 PRNYGDGVIAVKNLNSNNTK--VKNKIFTMDTNSS--------RLIVGMNNSQVQWFRLPLCED---DNGTIE-ESG-LK 193 (342)
T ss_dssp HHHHTTBCEEEEESCSSSSS--SCCCEEEEEECSS--------EEEEEESTTEEEEEESSCCTT---CCCEEE-ECS-CS
T ss_pred ccccccccccccCCeeeEEe--eCCceEEEEecCC--------cEEEEeCCCeEEEEECCcccc---ccceee-ecC-CC
Confidence 543 32 22232 3458999999832 299999999999887765 21 111221 222 13
Q ss_pred CceeeEEEEeeccCCCceEEEEEECCCeEEEEe
Q 002318 166 EAFMGLQMETASLSNGTRYYVMAVTPTRLYSFT 198 (936)
Q Consensus 166 ~~I~gi~~~~~~~~~~~~~~i~ast~~rly~f~ 198 (936)
.+|+++.|... +.+.++.++....++-|.
T Consensus 194 ~~i~~i~~~~~----~~~~l~~~~~dg~i~i~~ 222 (342)
T 1yfq_A 194 YQIRDVALLPK----EQEGYACSSIDGRVAVEF 222 (342)
T ss_dssp SCEEEEEECSG----GGCEEEEEETTSEEEEEE
T ss_pred CceeEEEECCC----CCCEEEEEecCCcEEEEE
Confidence 57999998620 346777777777766553
No 62
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=97.26 E-value=0.016 Score=63.83 Aligned_cols=159 Identities=8% Similarity=0.003 Sum_probs=103.3
Q ss_pred CceeEEEEeC-----CEEEEEecCCeEEEEeC-CCCCceeeEcCCCCCCccceeEEEeCCCCCeEE-EEeecCCCccEEE
Q 002318 22 GVITCMSAGN-----DVIVLGTSKGWLIRHDF-GAGDSYDIDLSAGRPGEQSIHKVFVDPGGSHCI-ATIVGSGGAETFY 94 (936)
Q Consensus 22 ~~i~~l~v~~-----n~l~l~~~~g~l~ridl-~~~~~~~~~l~~~~~~~~~i~~i~lDp~G~hll-i~~~~~~~g~~~Y 94 (936)
..+.+++... +.++.|..+|.|..+|+ .+..+..+.-+ ...|..+-.+|.|.+++ +++. +|....
T Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~-----~~~v~~~~~~~~~~~ll~~~~~---dg~i~i 213 (408)
T 4a11_B 142 ETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGSCSHILQGH-----RQEILAVSWSPRYDYILATASA---DSRVKL 213 (408)
T ss_dssp SCEEEEEECSSCSSCCEEEEEESSSSEEEEESSSSCCCEEECCC-----CSCEEEEEECSSCTTEEEEEET---TSCEEE
T ss_pred CceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCCcceeeeecCC-----CCcEEEEEECCCCCcEEEEEcC---CCcEEE
Confidence 4567777754 28999999999999999 66655555433 46899999999999855 4454 788877
Q ss_pred EecCCCC--ceec------------c--CCCCceEEEEEecCCCCCCCCcceEEEEcCCCcEEEEEEecCCcc-------
Q 002318 95 THAKWSK--PRVL------------S--KLKGLVVNAVAWNRQQITEASTKEIILGTDTGQLHEMAVDEKDKR------- 151 (936)
Q Consensus 95 ~~~~~~k--~k~L------------~--klkg~~I~sVaw~~~~~~~~st~~iLiGt~~G~i~e~~i~~~~~~------- 151 (936)
++....+ .+.+ . .-....|.+++|++. ...++.|+.+|.|....+......
T Consensus 214 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~------~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~ 287 (408)
T 4a11_B 214 WDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSD------GLHLLTVGTDNRMRLWNSSNGENTLVNYGKV 287 (408)
T ss_dssp EETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECTT------SSEEEEEETTSCEEEEETTTCCBCCCCCCCC
T ss_pred EECCCCCcccccccccccccceeeccccccccCceeEEEEcCC------CCEEEEecCCCeEEEEECCCCccceeccccc
Confidence 7653321 1111 0 123458999999942 237888999999988877543100
Q ss_pred -------------------------c--------ceeeEEeeeCCCCCceeeEEEEeeccCCCceEEEEEECCCeEEEEe
Q 002318 152 -------------------------E--------KYIKLLFELNELPEAFMGLQMETASLSNGTRYYVMAVTPTRLYSFT 198 (936)
Q Consensus 152 -------------------------~--------~~~k~v~~l~~~~~~I~gi~~~~~~~~~~~~~~i~ast~~rly~f~ 198 (936)
+ ...+.+..+..-.++|+++.|.. +.++++.++....++-|.
T Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~-----~~~~l~s~~~dg~i~iw~ 362 (408)
T 4a11_B 288 CNNSKKGLKFTVSCGCSSEFVFVPYGSTIAVYTVYSGEQITMLKGHYKTVDCCVFQS-----NFQELYSGSRDCNILAWV 362 (408)
T ss_dssp CCCCSSCCCCEECCSSSSCEEEEEETTEEEEEETTTCCEEEEECCCSSCEEEEEEET-----TTTEEEEEETTSCEEEEE
T ss_pred cccccccceeEEecCCCceEEEEecCCEEEEEECcCCcceeeeccCCCeEEEEEEcC-----CCCEEEEECCCCeEEEEe
Confidence 0 00122223333246789998873 235777777777788775
Q ss_pred c
Q 002318 199 G 199 (936)
Q Consensus 199 ~ 199 (936)
-
T Consensus 363 ~ 363 (408)
T 4a11_B 363 P 363 (408)
T ss_dssp E
T ss_pred C
Confidence 3
No 63
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=97.24 E-value=0.026 Score=61.47 Aligned_cols=158 Identities=8% Similarity=-0.000 Sum_probs=106.5
Q ss_pred CCceeEEEEeC--CEEEEEecCCeEEEEeC-CCCCceeeEcCCCCCCccceeEEEeCCCCCeEEEEeecCCCccEEEEec
Q 002318 21 RGVITCMSAGN--DVIVLGTSKGWLIRHDF-GAGDSYDIDLSAGRPGEQSIHKVFVDPGGSHCIATIVGSGGAETFYTHA 97 (936)
Q Consensus 21 ~~~i~~l~v~~--n~l~l~~~~g~l~ridl-~~~~~~~~~l~~~~~~~~~i~~i~lDp~G~hlli~~~~~~~g~~~Y~~~ 97 (936)
.+.|++++.+. ++++-|..+|+|..||+ .+..+..+.-+ ...|..+-++|.|.+++.++. +|....++.
T Consensus 76 ~~~V~~~~~~~~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~h-----~~~v~~v~~sp~~~~l~s~~~---d~~i~~wd~ 147 (343)
T 2xzm_R 76 NHFVSDLALSQENCFAISSSWDKTLRLWDLRTGTTYKRFVGH-----QSEVYSVAFSPDNRQILSAGA---EREIKLWNI 147 (343)
T ss_dssp SSCEEEEEECSSTTEEEEEETTSEEEEEETTSSCEEEEEECC-----CSCEEEEEECSSTTEEEEEET---TSCEEEEES
T ss_pred CCceEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEEEcCC-----CCcEEEEEECCCCCEEEEEcC---CCEEEEEec
Confidence 35689999875 57888889999999999 55555555444 468999999999999998887 899888876
Q ss_pred CCCCceeccCC--CCceEEEEEecCCCCCC----CCcceEEEEcCCCcEEEEEEecCCcccceeeEEeeeCCCCCceeeE
Q 002318 98 KWSKPRVLSKL--KGLVVNAVAWNRQQITE----ASTKEIILGTDTGQLHEMAVDEKDKREKYIKLLFELNELPEAFMGL 171 (936)
Q Consensus 98 ~~~k~k~L~kl--kg~~I~sVaw~~~~~~~----~st~~iLiGt~~G~i~e~~i~~~~~~~~~~k~v~~l~~~~~~I~gi 171 (936)
.......+... ....|.+++|++..... .....++.|+.+|.|..... + .+.+..+..-+++|+++
T Consensus 148 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~--~------~~~~~~~~~h~~~v~~~ 219 (343)
T 2xzm_R 148 LGECKFSSAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWNT--N------FQIRYTFKAHESNVNHL 219 (343)
T ss_dssp SSCEEEECCTTTSCSSCEEEEEECCCCCSCSCCCSSCCEEEEEETTSEEEEEET--T------TEEEEEEECCSSCEEEE
T ss_pred cCCceeeeecccCCCceeeeeeeccccccccccCCCCCEEEEEcCCCEEEEEcC--C------CceeEEEcCccccceEE
Confidence 53322222221 23479999999543110 11246788899998876652 1 11222232223679999
Q ss_pred EEEeeccCCCceEEEEEECCCeEEEEec
Q 002318 172 QMETASLSNGTRYYVMAVTPTRLYSFTG 199 (936)
Q Consensus 172 ~~~~~~~~~~~~~~i~ast~~rly~f~~ 199 (936)
.|.. +.++++.++....++-|.-
T Consensus 220 ~~s~-----~g~~l~sgs~dg~v~iwd~ 242 (343)
T 2xzm_R 220 SISP-----NGKYIATGGKDKKLLIWDI 242 (343)
T ss_dssp EECT-----TSSEEEEEETTCEEEEEES
T ss_pred EECC-----CCCEEEEEcCCCeEEEEEC
Confidence 9862 3367887777888887753
No 64
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=97.24 E-value=0.0083 Score=70.27 Aligned_cols=150 Identities=9% Similarity=0.055 Sum_probs=103.6
Q ss_pred CCceeEEEEeC--CEEEEEecCCeEEEEeCCCCCceeeEcCCCCCCccceeEEEeCCCCCeEEEEeecCCCccEEEEecC
Q 002318 21 RGVITCMSAGN--DVIVLGTSKGWLIRHDFGAGDSYDIDLSAGRPGEQSIHKVFVDPGGSHCIATIVGSGGAETFYTHAK 98 (936)
Q Consensus 21 ~~~i~~l~v~~--n~l~l~~~~g~l~ridl~~~~~~~~~l~~~~~~~~~i~~i~lDp~G~hlli~~~~~~~g~~~Y~~~~ 98 (936)
...|++++++. +.++.+..+|.|..+|+....+..+.-+ ...|..+.++|.|..++.++. +|....++..
T Consensus 426 ~~~v~~~~~s~d~~~l~~~~~d~~v~~w~~~~~~~~~~~~~-----~~~v~~~~~spd~~~las~~~---d~~i~iw~~~ 497 (577)
T 2ymu_A 426 SSSVWGVAFSPDDQTIASASDDKTVKLWNRNGQLLQTLTGH-----SSSVRGVAFSPDGQTIASASD---DKTVKLWNRN 497 (577)
T ss_dssp SSCEEEEEECTTSSEEEEEETTSEEEEEETTSCEEEEEECC-----SSCEEEEEECTTSCEEEEEET---TSEEEEEETT
T ss_pred CCCeEEEEECCCCCEEEEEcCCCEEEEEECCCCEEEEEcCC-----CCCEEEEEEcCCCCEEEEEeC---CCEEEEEcCC
Confidence 45689999974 5888999999999999854444444333 367999999999999888887 8988888764
Q ss_pred CCCceeccCCCCceEEEEEecCCCCCCCCcceEEEEcCCCcEEEEEEecCCcccceeeEEeeeCCCCCceeeEEEEeecc
Q 002318 99 WSKPRVLSKLKGLVVNAVAWNRQQITEASTKEIILGTDTGQLHEMAVDEKDKREKYIKLLFELNELPEAFMGLQMETASL 178 (936)
Q Consensus 99 ~~k~k~L~klkg~~I~sVaw~~~~~~~~st~~iLiGt~~G~i~e~~i~~~~~~~~~~k~v~~l~~~~~~I~gi~~~~~~~ 178 (936)
....+.+.. ....|++|+|.++ ..-++.|+.+|.|....... +.+.. +.-. .++|+++.|..
T Consensus 498 ~~~~~~~~~-h~~~v~~l~~s~d------g~~l~s~~~dg~v~lwd~~~-----~~~~~-~~~h--~~~v~~~~fs~--- 559 (577)
T 2ymu_A 498 GQLLQTLTG-HSSSVRGVAFSPD------GQTIASASDDKTVKLWNRNG-----QLLQT-LTGH--SSSVWGVAFSP--- 559 (577)
T ss_dssp SCEEEEEEC-CSSCEEEEEECTT------SSCEEEEETTSEEEEECTTS-----CEEEE-EECC--SSCEEEEEECT---
T ss_pred CCEEEEEeC-CCCCEEEEEEcCC------CCEEEEEECcCEEEEEeCCC-----CEEEE-EcCC--CCCEEEEEEcC---
Confidence 433344432 2358999999843 23677889999887664321 12222 2222 36799999862
Q ss_pred CCCceEEEEEECCCeEEEEe
Q 002318 179 SNGTRYYVMAVTPTRLYSFT 198 (936)
Q Consensus 179 ~~~~~~~i~ast~~rly~f~ 198 (936)
+.++++-++.+..+..|.
T Consensus 560 --dg~~l~s~~~D~~i~~Wd 577 (577)
T 2ymu_A 560 --DGQTIASASSDKTVKLWN 577 (577)
T ss_dssp --TSSCEEEEETTSCEEEEC
T ss_pred --CCCEEEEEeCCCEEEEeC
Confidence 335677777777787773
No 65
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=97.24 E-value=0.0037 Score=70.95 Aligned_cols=154 Identities=13% Similarity=0.139 Sum_probs=102.8
Q ss_pred CCceeEEEEe---CCEEEEEecCCeEEEEeC-CCCCceeeEcCCCCCCccceeEEEeCCC-CCeEEEEeecCCCccEEEE
Q 002318 21 RGVITCMSAG---NDVIVLGTSKGWLIRHDF-GAGDSYDIDLSAGRPGEQSIHKVFVDPG-GSHCIATIVGSGGAETFYT 95 (936)
Q Consensus 21 ~~~i~~l~v~---~n~l~l~~~~g~l~ridl-~~~~~~~~~l~~~~~~~~~i~~i~lDp~-G~hlli~~~~~~~g~~~Y~ 95 (936)
.+.|+||+.+ +++|+.|..+|.|..||+ .++....+.+. +-...|..|-..|. |..++.++. ||.+..+
T Consensus 119 ~~~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~~~~~~~---gH~~~V~~l~f~p~~~~~l~s~s~---D~~v~iw 192 (435)
T 4e54_B 119 DRRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTFIKGI---GAGGSITGLKFNPLNTNQFYASSM---EGTTRLQ 192 (435)
T ss_dssp SSCEEEEEECSSCTTCEEEEETTSCEEEECSSCCSCCEEECCC---SSSCCCCEEEECSSCTTEEEEECS---SSCEEEE
T ss_pred CCCEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCceeEEEcc---CCCCCEEEEEEeCCCCCEEEEEeC---CCEEEEe
Confidence 3469999997 368999999999999999 55443333322 11468999999985 777777766 8988888
Q ss_pred ecCCCCceeccCCC--CceEEEEEecCCCCCCCCcceEEEEcCCCcEEEEEEecCCcccceeeEEeeeCCCCCceeeEEE
Q 002318 96 HAKWSKPRVLSKLK--GLVVNAVAWNRQQITEASTKEIILGTDTGQLHEMAVDEKDKREKYIKLLFELNELPEAFMGLQM 173 (936)
Q Consensus 96 ~~~~~k~k~L~klk--g~~I~sVaw~~~~~~~~st~~iLiGt~~G~i~e~~i~~~~~~~~~~k~v~~l~~~~~~I~gi~~ 173 (936)
+......+.+.... +..+.+++|++. ..-++.|+.+|.|....+... .+..+..-..+|++|.|
T Consensus 193 d~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~l~~g~~dg~i~~wd~~~~--------~~~~~~~h~~~v~~v~~ 258 (435)
T 4e54_B 193 DFKGNILRVFASSDTINIWFCSLDVSAS------SRMVVTGDNVGNVILLNMDGK--------ELWNLRMHKKKVTHVAL 258 (435)
T ss_dssp ETTSCEEEEEECCSSCSCCCCCEEEETT------TTEEEEECSSSBEEEEESSSC--------BCCCSBCCSSCEEEEEE
T ss_pred eccCCceeEEeccCCCCccEEEEEECCC------CCEEEEEeCCCcEeeeccCcc--------eeEEEecccceEEeeee
Confidence 87655444433222 345788999842 347888999999988776432 12233322367999998
Q ss_pred EeeccCCCceEEEEEECCCeEEEEe
Q 002318 174 ETASLSNGTRYYVMAVTPTRLYSFT 198 (936)
Q Consensus 174 ~~~~~~~~~~~~i~ast~~rly~f~ 198 (936)
.. ....+++.++....+.-|.
T Consensus 259 ~p----~~~~~~~s~s~d~~v~iwd 279 (435)
T 4e54_B 259 NP----CCDWFLATASVDQTVKIWD 279 (435)
T ss_dssp CT----TCSSEEEEEETTSBCCEEE
T ss_pred cC----CCceEEEEecCcceeeEEe
Confidence 63 2234566666666666564
No 66
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=97.24 E-value=0.0062 Score=67.79 Aligned_cols=159 Identities=8% Similarity=0.068 Sum_probs=103.4
Q ss_pred CCceeEEEEeC---CEEEEEecCCeEEEEeC-CCCCceeeEcCCCCC-CccceeEEEeCCCCCe-EEEEeecCCCc---c
Q 002318 21 RGVITCMSAGN---DVIVLGTSKGWLIRHDF-GAGDSYDIDLSAGRP-GEQSIHKVFVDPGGSH-CIATIVGSGGA---E 91 (936)
Q Consensus 21 ~~~i~~l~v~~---n~l~l~~~~g~l~ridl-~~~~~~~~~l~~~~~-~~~~i~~i~lDp~G~h-lli~~~~~~~g---~ 91 (936)
.+.|++++.+. +.++.|..+|.|..+|+ .+..+..+..+.... ....|..+-.+|.|.. +++++. +| .
T Consensus 165 ~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~---d~~~~~ 241 (416)
T 2pm9_A 165 VDEVISLAWNQSLAHVFASAGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATG---SDNDPS 241 (416)
T ss_dssp SCCCCEEEECSSCTTEEEEESSSSCEEEEETTTTEEEEEECCCCCSSCCCCCEEEEEECSSCTTEEEEEEC---CSSSCC
T ss_pred CCCeeEEEeCCCCCcEEEEEcCCCCEEEEECCCCCcceEEeccccccccCCceEEEEECCCCCCEEEEEEC---CCCCce
Confidence 45799999985 48899999999999999 555555554442110 0367999999999854 555555 55 7
Q ss_pred EEEEecCCC-C-ceeccCCCCceEEEEEecCCCCCCCCcceEEEEcCCCcEEEEEEecCCcccceeeEEeeeCCCCCcee
Q 002318 92 TFYTHAKWS-K-PRVLSKLKGLVVNAVAWNRQQITEASTKEIILGTDTGQLHEMAVDEKDKREKYIKLLFELNELPEAFM 169 (936)
Q Consensus 92 ~~Y~~~~~~-k-~k~L~klkg~~I~sVaw~~~~~~~~st~~iLiGt~~G~i~e~~i~~~~~~~~~~k~v~~l~~~~~~I~ 169 (936)
...+..... + .+.+..-....|.+++|++.. ..-++.|+.+|.|....+... +.+..+..-.++|+
T Consensus 242 i~~~d~~~~~~~~~~~~~~~~~~v~~~~~s~~~-----~~~l~s~~~dg~v~~wd~~~~-------~~~~~~~~~~~~v~ 309 (416)
T 2pm9_A 242 ILIWDLRNANTPLQTLNQGHQKGILSLDWCHQD-----EHLLLSSGRDNTVLLWNPESA-------EQLSQFPARGNWCF 309 (416)
T ss_dssp CCEEETTSTTSCSBCCCSCCSSCEEEEEECSSC-----SSCEEEEESSSEEEEECSSSC-------CEEEEEECSSSCCC
T ss_pred EEEEeCCCCCCCcEEeecCccCceeEEEeCCCC-----CCeEEEEeCCCCEEEeeCCCC-------ccceeecCCCCceE
Confidence 766665543 2 222321234589999998522 247888999999887765442 22233332236799
Q ss_pred eEEEEeeccCCCceEEEEEECCCeEEEEe
Q 002318 170 GLQMETASLSNGTRYYVMAVTPTRLYSFT 198 (936)
Q Consensus 170 gi~~~~~~~~~~~~~~i~ast~~rly~f~ 198 (936)
++.|.. ...++++.++....+.-|.
T Consensus 310 ~~~~s~----~~~~~l~s~~~d~~i~iw~ 334 (416)
T 2pm9_A 310 KTKFAP----EAPDLFACASFDNKIEVQT 334 (416)
T ss_dssp CEEECT----TCTTEEEECCSSSEEEEEE
T ss_pred EEEECC----CCCCEEEEEecCCcEEEEE
Confidence 999973 2224666666677777675
No 67
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=97.23 E-value=0.017 Score=64.52 Aligned_cols=161 Identities=11% Similarity=0.054 Sum_probs=108.3
Q ss_pred CCCceeEEEEeC--CEEEEEecCCeEEEEeC-CCCCceeeEcCCCCCCccceeEEEeCCCCCeEEEEeecCCCccEEEEe
Q 002318 20 GRGVITCMSAGN--DVIVLGTSKGWLIRHDF-GAGDSYDIDLSAGRPGEQSIHKVFVDPGGSHCIATIVGSGGAETFYTH 96 (936)
Q Consensus 20 ~~~~i~~l~v~~--n~l~l~~~~g~l~ridl-~~~~~~~~~l~~~~~~~~~i~~i~lDp~G~hlli~~~~~~~g~~~Y~~ 96 (936)
..+.|++++.+. +.++.|..+|.|..||+ .+..+..+.-+ ...|..+-.+|.|..++.++. +|....++
T Consensus 138 h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h-----~~~v~~~~~~~~~~~l~s~~~---d~~v~iwd 209 (420)
T 3vl1_A 138 HVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLIGH-----RATVTDIAIIDRGRNVLSASL---DGTIRLWE 209 (420)
T ss_dssp SSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCCCEEEECC-----SSCEEEEEEETTTTEEEEEET---TSCEEEEE
T ss_pred ccCccEEEEECCCCCEEEEEeCCCeEEEEeCCCCcCceEEcCC-----CCcEEEEEEcCCCCEEEEEcC---CCcEEEeE
Confidence 346799999974 48999999999999999 66666666544 468999999999999998887 89888887
Q ss_pred cCCCCc-eeccC--CCCceEEEEEecCCCCC---------------CCCcceEEEEcCCCcEEEEEEecCCcccceeeEE
Q 002318 97 AKWSKP-RVLSK--LKGLVVNAVAWNRQQIT---------------EASTKEIILGTDTGQLHEMAVDEKDKREKYIKLL 158 (936)
Q Consensus 97 ~~~~k~-k~L~k--lkg~~I~sVaw~~~~~~---------------~~st~~iLiGt~~G~i~e~~i~~~~~~~~~~k~v 158 (936)
....+. +.+.. -....|.+++|.+.... ..+...++.|+.+|.|....+... +.+
T Consensus 210 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~-------~~~ 282 (420)
T 3vl1_A 210 CGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGKYVIAGHVSGVITVHNVFSK-------EQT 282 (420)
T ss_dssp TTTTEEEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTTEEEEEEETTSCEEEEETTTC-------CEE
T ss_pred CCCCceeEEeecCCCCCCCccEEEEecCCcceeeecccCcccceEEcCCCCEEEEEcCCCeEEEEECCCC-------cee
Confidence 655432 22221 12346777777422100 113457888999999988776543 122
Q ss_pred eeeCC-CCCceeeEEEEeeccCCCceEEEEEECCCeEEEEec
Q 002318 159 FELNE-LPEAFMGLQMETASLSNGTRYYVMAVTPTRLYSFTG 199 (936)
Q Consensus 159 ~~l~~-~~~~I~gi~~~~~~~~~~~~~~i~ast~~rly~f~~ 199 (936)
..+.. ...+|+++.|.. ....+++.++....++-|.-
T Consensus 283 ~~~~~~~~~~v~~~~~~~----~~~~~l~~g~~dg~i~vwd~ 320 (420)
T 3vl1_A 283 IQLPSKFTCSCNSLTVDG----NNANYIYAGYENGMLAQWDL 320 (420)
T ss_dssp EEECCTTSSCEEEEEECS----SCTTEEEEEETTSEEEEEET
T ss_pred EEcccccCCCceeEEEeC----CCCCEEEEEeCCCeEEEEEc
Confidence 22321 136799999973 22237777777888888853
No 68
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=97.23 E-value=0.031 Score=59.51 Aligned_cols=164 Identities=11% Similarity=0.115 Sum_probs=105.3
Q ss_pred CCceeEEEEe----CCEEEEEecCCeEEEEeC-CCC--CceeeEcCCCCCCccceeEEEeCCC--CCeEEEEeecCCCcc
Q 002318 21 RGVITCMSAG----NDVIVLGTSKGWLIRHDF-GAG--DSYDIDLSAGRPGEQSIHKVFVDPG--GSHCIATIVGSGGAE 91 (936)
Q Consensus 21 ~~~i~~l~v~----~n~l~l~~~~g~l~ridl-~~~--~~~~~~l~~~~~~~~~i~~i~lDp~--G~hlli~~~~~~~g~ 91 (936)
.+.|.+++.+ ++.|+-|..+|+|..||+ .+. .+..+..+ ...|..+-..|. |..+++++. +|.
T Consensus 53 ~~~V~~v~~s~~~~g~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~h-----~~~v~~v~~~p~~~g~~l~s~s~---d~~ 124 (297)
T 2pm7_B 53 EGPVWRVDWAHPKFGTILASCSYDGKVMIWKEENGRWSQIAVHAVH-----SASVNSVQWAPHEYGPMLLVASS---DGK 124 (297)
T ss_dssp SSCEEEEEECCGGGCSEEEEEETTTEEEEEEBSSSCBCCCEEECCC-----SSCEEEEEECCGGGCSEEEEEET---TSE
T ss_pred cCCeEEEEecCCCcCCEEEEEcCCCEEEEEEcCCCceEEEEEeecC-----CCceeEEEeCcCCCCcEEEEEEC---CCc
Confidence 4579999985 578999999999999999 432 22222222 357999999987 888888887 888
Q ss_pred EEEEecCCCC---ceeccCCCCceEEEEEecCCCCCC-------CCcceEEEEcCCCcEEEEEEecCCcccceeeEEeee
Q 002318 92 TFYTHAKWSK---PRVLSKLKGLVVNAVAWNRQQITE-------ASTKEIILGTDTGQLHEMAVDEKDKREKYIKLLFEL 161 (936)
Q Consensus 92 ~~Y~~~~~~k---~k~L~klkg~~I~sVaw~~~~~~~-------~st~~iLiGt~~G~i~e~~i~~~~~~~~~~k~v~~l 161 (936)
...+...... ...+. -....|.+++|++..... .....++.|+.+|.|....+.... +....+..+
T Consensus 125 v~~wd~~~~~~~~~~~~~-~h~~~v~~~~~~p~~~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~---~~~~~~~~l 200 (297)
T 2pm7_B 125 VSVVEFKENGTTSPIIID-AHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDA---QTYVLESTL 200 (297)
T ss_dssp EEEEEBCSSSCBCCEEEE-CCSSCEEEEEECCCC------------CCEEEEEETTSCEEEEEEETTT---TEEEEEEEE
T ss_pred EEEEEecCCCceeeeeee-cccCccceEeecCCcccccccCCCCCCcceEEEEcCCCcEEEEEEcCCC---ceEEEEEEe
Confidence 8777654432 22222 123479999999542110 013468889999999888776431 122233345
Q ss_pred CCCCCceeeEEEEeeccCCCceEEEEEECCCeEEEEe
Q 002318 162 NELPEAFMGLQMETASLSNGTRYYVMAVTPTRLYSFT 198 (936)
Q Consensus 162 ~~~~~~I~gi~~~~~~~~~~~~~~i~ast~~rly~f~ 198 (936)
.+-.++|.++.|.... ...++++-++....+.-|.
T Consensus 201 ~~H~~~V~~v~~sp~~--~~~~~las~s~D~~v~iWd 235 (297)
T 2pm7_B 201 EGHSDWVRDVAWSPTV--LLRSYMASVSQDRTCIIWT 235 (297)
T ss_dssp CCCSSCEEEEEECCCC--SSSEEEEEEETTSCEEEEE
T ss_pred cCCCCceEEEEECCCC--CCceEEEEEECCCcEEEEE
Confidence 4334679999997311 1135677777777777674
No 69
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=97.19 E-value=0.031 Score=61.05 Aligned_cols=156 Identities=9% Similarity=0.042 Sum_probs=106.3
Q ss_pred CCceeEEEEeC--CEEEEEecCCeEEEEeCCCCCceee-EcCCCCCCccceeEEEeCCCCCeEEEEeecCCCccEEEEec
Q 002318 21 RGVITCMSAGN--DVIVLGTSKGWLIRHDFGAGDSYDI-DLSAGRPGEQSIHKVFVDPGGSHCIATIVGSGGAETFYTHA 97 (936)
Q Consensus 21 ~~~i~~l~v~~--n~l~l~~~~g~l~ridl~~~~~~~~-~l~~~~~~~~~i~~i~lDp~G~hlli~~~~~~~g~~~Y~~~ 97 (936)
.+.|++++.+. +.|+.|..+|++..+|++......+ .+. .-...|..+-..|.|..++.++. +|....+..
T Consensus 61 ~~~v~~~~~sp~g~~l~s~s~D~~v~iw~~~~~~~~~~~~~~---~h~~~v~~v~~sp~~~~l~s~s~---D~~v~iwd~ 134 (345)
T 3fm0_A 61 QRTVRKVAWSPCGNYLASASFDATTCIWKKNQDDFECVTTLE---GHENEVKSVAWAPSGNLLATCSR---DKSVWVWEV 134 (345)
T ss_dssp SSCEEEEEECTTSSEEEEEETTSCEEEEEECCC-EEEEEEEC---CCSSCEEEEEECTTSSEEEEEET---TSCEEEEEE
T ss_pred CCcEEEEEECCCCCEEEEEECCCcEEEEEccCCCeEEEEEcc---CCCCCceEEEEeCCCCEEEEEEC---CCeEEEEEC
Confidence 35699999974 5899999999999999943332211 121 11468999999999999998888 898887776
Q ss_pred CCCC-ceeccCCC--CceEEEEEecCCCCCCCCcceEEEEcCCCcEEEEEEecCCcccceeeEEeeeCCCCCceeeEEEE
Q 002318 98 KWSK-PRVLSKLK--GLVVNAVAWNRQQITEASTKEIILGTDTGQLHEMAVDEKDKREKYIKLLFELNELPEAFMGLQME 174 (936)
Q Consensus 98 ~~~k-~k~L~klk--g~~I~sVaw~~~~~~~~st~~iLiGt~~G~i~e~~i~~~~~~~~~~k~v~~l~~~~~~I~gi~~~ 174 (936)
...+ ...+..+. ...|.+|+|++. ..-++.|+.+|.|....+... .+..+..+.+-.++|+++.|.
T Consensus 135 ~~~~~~~~~~~~~~h~~~v~~~~~~p~------~~~l~s~s~d~~i~~w~~~~~-----~~~~~~~~~~h~~~v~~l~~s 203 (345)
T 3fm0_A 135 DEEDEYECVSVLNSHTQDVKHVVWHPS------QELLASASYDDTVKLYREEED-----DWVCCATLEGHESTVWSLAFD 203 (345)
T ss_dssp CTTSCEEEEEEECCCCSCEEEEEECSS------SSCEEEEETTSCEEEEEEETT-----EEEEEEEECCCSSCEEEEEEC
T ss_pred CCCCCeEEEEEecCcCCCeEEEEECCC------CCEEEEEeCCCcEEEEEecCC-----CEEEEEEecCCCCceEEEEEC
Confidence 4432 22233233 347999999953 236888999999888776543 122233444334679999997
Q ss_pred eeccCCCceEEEEEECCCeEEEEe
Q 002318 175 TASLSNGTRYYVMAVTPTRLYSFT 198 (936)
Q Consensus 175 ~~~~~~~~~~~i~ast~~rly~f~ 198 (936)
. +.++++.++....+.-|.
T Consensus 204 p-----~g~~l~s~s~D~~v~iW~ 222 (345)
T 3fm0_A 204 P-----SGQRLASCSDDRTVRIWR 222 (345)
T ss_dssp T-----TSSEEEEEETTSCEEEEE
T ss_pred C-----CCCEEEEEeCCCeEEEec
Confidence 3 336777777777777674
No 70
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=97.17 E-value=0.0097 Score=64.57 Aligned_cols=151 Identities=11% Similarity=0.161 Sum_probs=102.8
Q ss_pred CCCceeEEEEeC-----CEEEEEecCCeEEEEeC-CCCCce--eeEcCCCCCCccceeEEEeCCCCCeEEEEeecCCCcc
Q 002318 20 GRGVITCMSAGN-----DVIVLGTSKGWLIRHDF-GAGDSY--DIDLSAGRPGEQSIHKVFVDPGGSHCIATIVGSGGAE 91 (936)
Q Consensus 20 ~~~~i~~l~v~~-----n~l~l~~~~g~l~ridl-~~~~~~--~~~l~~~~~~~~~i~~i~lDp~G~hlli~~~~~~~g~ 91 (936)
..+.|+|++.++ +.|+.|..+|.|..||+ ...... .+.-+ ...|..+-..|.|.++++++. +|.
T Consensus 38 h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h-----~~~v~~~~~~~~~~~l~s~~~---dg~ 109 (368)
T 3mmy_A 38 PDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMH-----TGPVLDVCWSDDGSKVFTASC---DKT 109 (368)
T ss_dssp CSSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSCEEEEEEEEC-----SSCEEEEEECTTSSEEEEEET---TSE
T ss_pred CCCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCceeEEEeccc-----cCCEEEEEECcCCCEEEEEcC---CCc
Confidence 346799999997 47899999999999999 423332 22222 468999999999999998887 899
Q ss_pred EEEEecCCCCceeccCCCCceEEEEEecCCCCCCCCcceEEEEcCCCcEEEEEEecCCcccceeeEEeeeCCCCCceeeE
Q 002318 92 TFYTHAKWSKPRVLSKLKGLVVNAVAWNRQQITEASTKEIILGTDTGQLHEMAVDEKDKREKYIKLLFELNELPEAFMGL 171 (936)
Q Consensus 92 ~~Y~~~~~~k~k~L~klkg~~I~sVaw~~~~~~~~st~~iLiGt~~G~i~e~~i~~~~~~~~~~k~v~~l~~~~~~I~gi 171 (936)
...++....+...+.. ....|++++|.+. .+...++.|+.+|.|....+...+ ....+..+ ..+..+
T Consensus 110 v~iwd~~~~~~~~~~~-~~~~v~~~~~~~~----~~~~~l~~~~~dg~i~vwd~~~~~-----~~~~~~~~---~~~~~~ 176 (368)
T 3mmy_A 110 AKMWDLSSNQAIQIAQ-HDAPVKTIHWIKA----PNYSCVMTGSWDKTLKFWDTRSSN-----PMMVLQLP---ERCYCA 176 (368)
T ss_dssp EEEEETTTTEEEEEEE-CSSCEEEEEEEEC----SSCEEEEEEETTSEEEEECSSCSS-----CSEEEECS---SCEEEE
T ss_pred EEEEEcCCCCceeecc-ccCceEEEEEEeC----CCCCEEEEccCCCcEEEEECCCCc-----EEEEEecC---CCceEE
Confidence 9888877665554433 4568999999421 123468889999998887665431 11222333 345555
Q ss_pred EEEeeccCCCceEEEEEECCCeEEEEe
Q 002318 172 QMETASLSNGTRYYVMAVTPTRLYSFT 198 (936)
Q Consensus 172 ~~~~~~~~~~~~~~i~ast~~rly~f~ 198 (936)
.+.. ..+++++....++.|.
T Consensus 177 ~~~~-------~~~~~~~~~~~i~~~~ 196 (368)
T 3mmy_A 177 DVIY-------PMAVVATAERGLIVYQ 196 (368)
T ss_dssp EEET-------TEEEEEEGGGCEEEEE
T ss_pred EecC-------CeeEEEeCCCcEEEEE
Confidence 5541 3566666666666564
No 71
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=97.16 E-value=0.015 Score=62.64 Aligned_cols=133 Identities=9% Similarity=0.105 Sum_probs=92.0
Q ss_pred CCCceeEEEEeCCEEEEEecCCeEEEEeC-C-CCCc-eeeEcCCCCCCccceeEEEeCC-CCCeEEEEeecCCCccEEEE
Q 002318 20 GRGVITCMSAGNDVIVLGTSKGWLIRHDF-G-AGDS-YDIDLSAGRPGEQSIHKVFVDP-GGSHCIATIVGSGGAETFYT 95 (936)
Q Consensus 20 ~~~~i~~l~v~~n~l~l~~~~g~l~ridl-~-~~~~-~~~~l~~~~~~~~~i~~i~lDp-~G~hlli~~~~~~~g~~~Y~ 95 (936)
.++.|++++.+++.++.|..+|.|..+|+ . +... .....+. ...|..+-.+| .|..+++++. +|....+
T Consensus 149 ~~~~v~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~----~~~i~~i~~~~~~~~~l~~~~~---dg~i~i~ 221 (342)
T 1yfq_A 149 VKNKIFTMDTNSSRLIVGMNNSQVQWFRLPLCEDDNGTIEESGL----KYQIRDVALLPKEQEGYACSSI---DGRVAVE 221 (342)
T ss_dssp SCCCEEEEEECSSEEEEEESTTEEEEEESSCCTTCCCEEEECSC----SSCEEEEEECSGGGCEEEEEET---TSEEEEE
T ss_pred eCCceEEEEecCCcEEEEeCCCeEEEEECCccccccceeeecCC----CCceeEEEECCCCCCEEEEEec---CCcEEEE
Confidence 34679999999999999999999999999 5 4432 2222221 35789999999 9999988887 8887665
Q ss_pred ecCCC--C--ceeccCCCCc-----------eEEEEEecCCCCCCCCcceEEEEcCCCcEEEEEEecCCcccceeeEEee
Q 002318 96 HAKWS--K--PRVLSKLKGL-----------VVNAVAWNRQQITEASTKEIILGTDTGQLHEMAVDEKDKREKYIKLLFE 160 (936)
Q Consensus 96 ~~~~~--k--~k~L~klkg~-----------~I~sVaw~~~~~~~~st~~iLiGt~~G~i~e~~i~~~~~~~~~~k~v~~ 160 (936)
..... . .+.+..++++ .|.+++|++. ...++.|+.+|.|....+... +.+..
T Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~------~~~l~~~~~dg~i~vwd~~~~-------~~~~~ 288 (342)
T 1yfq_A 222 FFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPR------HKFLYTAGSDGIISCWNLQTR-------KKIKN 288 (342)
T ss_dssp ECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECTT------TCCEEEEETTSCEEEEETTTT-------EEEEE
T ss_pred EEcCCCcccccccceeeecccccccccccceeEEEEEEcCC------CCEEEEecCCceEEEEcCccH-------hHhhh
Confidence 44332 0 1112222333 8999999942 236889999999988776543 22334
Q ss_pred eCCC-CCceeeEE
Q 002318 161 LNEL-PEAFMGLQ 172 (936)
Q Consensus 161 l~~~-~~~I~gi~ 172 (936)
+..- .++|+++.
T Consensus 289 ~~~~h~~~v~~~~ 301 (342)
T 1yfq_A 289 FAKFNEDSVVKIA 301 (342)
T ss_dssp CCCCSSSEEEEEE
T ss_pred hhcccCCCceEec
Confidence 4433 36788887
No 72
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=97.16 E-value=0.32 Score=54.81 Aligned_cols=156 Identities=11% Similarity=0.051 Sum_probs=102.0
Q ss_pred eeEEEEeCCEEEEEecCCeEEEEeC-CCCCceeeEcCCCCCCccceeEEEeCCCCCeEEEEeecCCCccEEEEecCCCCc
Q 002318 24 ITCMSAGNDVIVLGTSKGWLIRHDF-GAGDSYDIDLSAGRPGEQSIHKVFVDPGGSHCIATIVGSGGAETFYTHAKWSKP 102 (936)
Q Consensus 24 i~~l~v~~n~l~l~~~~g~l~ridl-~~~~~~~~~l~~~~~~~~~i~~i~lDp~G~hlli~~~~~~~g~~~Y~~~~~~k~ 102 (936)
++|++..++.++.|..+|+|..+|+ .+..+..+.-+ ...|..+...|.| .++.++. +|....++....+.
T Consensus 125 ~~~~~~~~~~l~sgs~dg~i~vwd~~~~~~~~~~~~h-----~~~V~~l~~~~~~-~l~s~s~---dg~i~vwd~~~~~~ 195 (464)
T 3v7d_B 125 ITCLQFEDNYVITGADDKMIRVYDSINKKFLLQLSGH-----DGGVWALKYAHGG-ILVSGST---DRTVRVWDIKKGCC 195 (464)
T ss_dssp EEEEEEETTEEEEEETTSCEEEEETTTTEEEEEECCC-----SSCEEEEEECSTT-EEEEEET---TSCEEEEETTTTEE
T ss_pred EEEEEECCCEEEEEcCCCcEEEEECCCCcEEEEEeCC-----CcCEEEEEEcCCC-EEEEEeC---CCCEEEEECCCCcE
Confidence 7899999999999999999999999 55444444333 4689999999988 6666666 89998888765542
Q ss_pred eeccCCCCceEEEEEecCCCCCCCCcceEEEEcCCCcEEEEEEecCCccc-----ceee-----------EEeeeCCCCC
Q 002318 103 RVLSKLKGLVVNAVAWNRQQITEASTKEIILGTDTGQLHEMAVDEKDKRE-----KYIK-----------LLFELNELPE 166 (936)
Q Consensus 103 k~L~klkg~~I~sVaw~~~~~~~~st~~iLiGt~~G~i~e~~i~~~~~~~-----~~~k-----------~v~~l~~~~~ 166 (936)
...-+-....|.+++|.+. .+...++.|+.+|.|....+....... .... .+..+.+...
T Consensus 196 ~~~~~~h~~~v~~l~~~~~----~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 271 (464)
T 3v7d_B 196 THVFEGHNSTVRCLDIVEY----KNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMA 271 (464)
T ss_dssp EEEECCCSSCEEEEEEEES----SSCEEEEEEETTSCEEEEECCCCCCC------CCSSEEESCGGGCTTEEEEECCCSS
T ss_pred EEEECCCCCccEEEEEecC----CCCCEEEEEcCCCcEEEeeCCCCcccccccccCCcceEeeccCCCeEEEEEccCccc
Confidence 2221223458999999842 133578899999999988776431100 0000 0112222224
Q ss_pred ceeeEEEEeeccCCCceEEEEEECCCeEEEEec
Q 002318 167 AFMGLQMETASLSNGTRYYVMAVTPTRLYSFTG 199 (936)
Q Consensus 167 ~I~gi~~~~~~~~~~~~~~i~ast~~rly~f~~ 199 (936)
+|..+... .+.++.++....++-|.-
T Consensus 272 ~v~~~~~~-------~~~l~~~~~d~~i~vwd~ 297 (464)
T 3v7d_B 272 SVRTVSGH-------GNIVVSGSYDNTLIVWDV 297 (464)
T ss_dssp CEEEEEEE-------TTEEEEEETTSCEEEEET
T ss_pred eEEEEcCC-------CCEEEEEeCCCeEEEEEC
Confidence 56666433 257777777777887753
No 73
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=97.13 E-value=0.013 Score=65.05 Aligned_cols=154 Identities=12% Similarity=0.060 Sum_probs=101.2
Q ss_pred CceeEEEEe---CCEEEEEecCCeEEEEeC-CCCC-ceeeEcCCCCCCccceeEEEeCCCCCeEEEEeecCCCccEEEEe
Q 002318 22 GVITCMSAG---NDVIVLGTSKGWLIRHDF-GAGD-SYDIDLSAGRPGEQSIHKVFVDPGGSHCIATIVGSGGAETFYTH 96 (936)
Q Consensus 22 ~~i~~l~v~---~n~l~l~~~~g~l~ridl-~~~~-~~~~~l~~~~~~~~~i~~i~lDp~G~hlli~~~~~~~g~~~Y~~ 96 (936)
..+.+++++ +++++-|..+|+|..||+ .+.. +..+.-+ ...|..+-+.|.|.+++.++. +|....++
T Consensus 206 ~~v~~~~~~~~~~~~l~sgs~D~~v~~wd~~~~~~~~~~~~~h-----~~~v~~v~~~p~~~~l~s~s~---D~~i~lwd 277 (380)
T 3iz6_a 206 ADVLSLSINSLNANMFISGSCDTTVRLWDLRITSRAVRTYHGH-----EGDINSVKFFPDGQRFGTGSD---DGTCRLFD 277 (380)
T ss_dssp SCEEEEEECSSSCCEEEEEETTSCEEEEETTTTCCCCEEECCC-----SSCCCEEEECTTSSEEEEECS---SSCEEEEE
T ss_pred cCeEEEEeecCCCCEEEEEECCCeEEEEECCCCCcceEEECCc-----CCCeEEEEEecCCCeEEEEcC---CCeEEEEE
Confidence 457888884 478999999999999999 3433 3333333 467999999999999988888 89998887
Q ss_pred cCCCCc-eeccCCC------CceEEEEEecCCCCCCCCcceEEEEcCCCcEEEEEEecCCcccceeeEEeee-CCCCCce
Q 002318 97 AKWSKP-RVLSKLK------GLVVNAVAWNRQQITEASTKEIILGTDTGQLHEMAVDEKDKREKYIKLLFEL-NELPEAF 168 (936)
Q Consensus 97 ~~~~k~-k~L~klk------g~~I~sVaw~~~~~~~~st~~iLiGt~~G~i~e~~i~~~~~~~~~~k~v~~l-~~~~~~I 168 (936)
....+. +.+..-. ...|++++|++. ...++.|+.+|.|+...+... +....+-.+ ..-.++|
T Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~------g~~l~~g~~dg~i~vwd~~~~----~~~~~~~~~~~~h~~~v 347 (380)
T 3iz6_a 278 MRTGHQLQVYNREPDRNDNELPIVTSVAFSIS------GRLLFAGYSNGDCYVWDTLLA----EMVLNLGTLQNSHEGRI 347 (380)
T ss_dssp TTTTEEEEEECCCCSSSCCSSCSCSEEEECSS------SSEEEEECTTSCEEEEETTTC----CEEEEECCSCSSCCCCC
T ss_pred CCCCcEEEEecccccccccccCceEEEEECCC------CCEEEEEECCCCEEEEECCCC----ceEEEEecccCCCCCce
Confidence 655432 2221111 124899999842 347888999999988765432 112222111 1123679
Q ss_pred eeEEEEeeccCCCceEEEEEECCCeEEEEe
Q 002318 169 MGLQMETASLSNGTRYYVMAVTPTRLYSFT 198 (936)
Q Consensus 169 ~gi~~~~~~~~~~~~~~i~ast~~rly~f~ 198 (936)
+++.|.. +.++++-++....+.-|.
T Consensus 348 ~~l~~s~-----dg~~l~sgs~D~~i~iW~ 372 (380)
T 3iz6_a 348 SCLGLSS-----DGSALCTGSWDKNLKIWA 372 (380)
T ss_dssp CEEEECS-----SSSEEEEECTTSCEEEEE
T ss_pred EEEEECC-----CCCEEEEeeCCCCEEEEe
Confidence 9999963 335666666666666664
No 74
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=97.13 E-value=0.0092 Score=67.56 Aligned_cols=158 Identities=10% Similarity=0.033 Sum_probs=101.7
Q ss_pred CCceeEEEEeCC---EEEEEecCCeEEEEeC-CC----------CCceeeEcCCCCCCccceeEEEeCCCCC-eEEEEee
Q 002318 21 RGVITCMSAGND---VIVLGTSKGWLIRHDF-GA----------GDSYDIDLSAGRPGEQSIHKVFVDPGGS-HCIATIV 85 (936)
Q Consensus 21 ~~~i~~l~v~~n---~l~l~~~~g~l~ridl-~~----------~~~~~~~l~~~~~~~~~i~~i~lDp~G~-hlli~~~ 85 (936)
++.|++++.+.+ +++.|..+|.|..+|+ .. .....+.-+ ...|..+-.+|.|. +++++..
T Consensus 128 ~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h-----~~~v~~l~~~~~~~~~l~s~~~ 202 (430)
T 2xyi_A 128 EGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGH-----QKEGYGLSWNPNLNGYLLSASD 202 (430)
T ss_dssp SSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEECC-----SSCCCCEEECTTSTTEEEEECT
T ss_pred CCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccCccccCCCcEEecCC-----CCCeEEEEeCCCCCCeEEEEeC
Confidence 457999999864 7888899999999999 31 222222222 35788999999999 6666665
Q ss_pred cCCCccEEEEecCCCC-----ceeccCCCC--ceEEEEEecCCCCCCCCcceEEEEcCCCcEEEEEEecCCcccceeeEE
Q 002318 86 GSGGAETFYTHAKWSK-----PRVLSKLKG--LVVNAVAWNRQQITEASTKEIILGTDTGQLHEMAVDEKDKREKYIKLL 158 (936)
Q Consensus 86 ~~~~g~~~Y~~~~~~k-----~k~L~klkg--~~I~sVaw~~~~~~~~st~~iLiGt~~G~i~e~~i~~~~~~~~~~k~v 158 (936)
+|....+.....+ ......+.+ ..|.+|+|++.. ..-|+.|+.+|.|....+..... .+....
T Consensus 203 ---dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~-----~~~l~s~~~dg~i~i~d~~~~~~-~~~~~~- 272 (430)
T 2xyi_A 203 ---DHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLH-----ESLFGSVADDQKLMIWDTRNNNT-SKPSHT- 272 (430)
T ss_dssp ---TSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSC-----TTEEEEEETTSEEEEEETTCSCS-SSCSEE-
T ss_pred ---CCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCC-----CCEEEEEeCCCeEEEEECCCCCC-CcceeE-
Confidence 7888888765521 111222233 479999999532 23677889999999887754310 111222
Q ss_pred eeeCCCCCceeeEEEEeeccCCCceEEEEEECCCeEEEEec
Q 002318 159 FELNELPEAFMGLQMETASLSNGTRYYVMAVTPTRLYSFTG 199 (936)
Q Consensus 159 ~~l~~~~~~I~gi~~~~~~~~~~~~~~i~ast~~rly~f~~ 199 (936)
+.-. .++|+.|.|.. ....+++.++....+.-|.-
T Consensus 273 ~~~~--~~~v~~i~~~p----~~~~~l~tg~~dg~v~vwd~ 307 (430)
T 2xyi_A 273 VDAH--TAEVNCLSFNP----YSEFILATGSADKTVALWDL 307 (430)
T ss_dssp EECC--SSCEEEEEECS----SCTTEEEEEETTSEEEEEET
T ss_pred eecC--CCCeEEEEeCC----CCCCEEEEEeCCCeEEEEeC
Confidence 1222 36799999973 22235666666777777753
No 75
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=97.10 E-value=0.024 Score=62.31 Aligned_cols=157 Identities=9% Similarity=0.007 Sum_probs=102.3
Q ss_pred CceeEEEEeC-CEEEEEecCCeEEEEeC-CCCCceeeEcCCCCCCccceeEEEeCCCCCeEEEEeecCCCccEEEEecCC
Q 002318 22 GVITCMSAGN-DVIVLGTSKGWLIRHDF-GAGDSYDIDLSAGRPGEQSIHKVFVDPGGSHCIATIVGSGGAETFYTHAKW 99 (936)
Q Consensus 22 ~~i~~l~v~~-n~l~l~~~~g~l~ridl-~~~~~~~~~l~~~~~~~~~i~~i~lDp~G~hlli~~~~~~~g~~~Y~~~~~ 99 (936)
..|++++.++ +.++.|..+|+|..||+ .+............ -...|..+-+.|.|.+++.++. +|....++...
T Consensus 83 ~~v~~~~~s~d~~l~~~s~dg~v~lWd~~~~~~~~~~~~~~~~-H~~~V~~v~~spdg~~l~sgs~---d~~i~iwd~~~ 158 (344)
T 4gqb_B 83 AGVADLTWVGERGILVASDSGAVELWELDENETLIVSKFCKYE-HDDIVSTVSVLSSGTQAVSGSK---DICIKVWDLAQ 158 (344)
T ss_dssp SCEEEEEEETTTEEEEEETTSEEEEEEECTTSSCEEEEEEEEC-CSSCEEEEEECTTSSEEEEEET---TSCEEEEETTT
T ss_pred CCEEEEEEeCCCeEEEEECCCEEEEEeccCCCceeEeeccccC-CCCCEEEEEECCCCCEEEEEeC---CCeEEEEECCC
Confidence 3588898765 57889999999999999 55544333322111 1468999999999999999888 89998888765
Q ss_pred CCceeccCCCC--ceEEEEEecCCCCCCCCcceEEEEcCCCcEEEEEEecCCcccceeeEEeeeCCCCCceeeEEEEeec
Q 002318 100 SKPRVLSKLKG--LVVNAVAWNRQQITEASTKEIILGTDTGQLHEMAVDEKDKREKYIKLLFELNELPEAFMGLQMETAS 177 (936)
Q Consensus 100 ~k~k~L~klkg--~~I~sVaw~~~~~~~~st~~iLiGt~~G~i~e~~i~~~~~~~~~~k~v~~l~~~~~~I~gi~~~~~~ 177 (936)
.+ .+..++| ..|.+++|++.. ..-++.|+.+|.|....+... +....+ ........++++.|..
T Consensus 159 ~~--~~~~~~~h~~~V~~~~~~~~~-----~~~l~s~s~D~~v~iwd~~~~----~~~~~~-~~~~~~~~~~~~~~~p-- 224 (344)
T 4gqb_B 159 QV--VLSSYRAHAAQVTCVAASPHK-----DSVFLSCSEDNRILLWDTRCP----KPASQI-GCSAPGYLPTSLAWHP-- 224 (344)
T ss_dssp TE--EEEEECCCSSCEEEEEECSSC-----TTEEEEEETTSCEEEEETTSS----SCEEEC-C----CCCEEEEEECS--
T ss_pred Cc--EEEEEcCcCCceEEEEecCCC-----CCceeeecccccccccccccc----ceeeee-ecceeeccceeeeecC--
Confidence 43 3334444 489999998432 124667889999887665432 112222 1121124578888762
Q ss_pred cCCCceEEEEEECCCeEEEEe
Q 002318 178 LSNGTRYYVMAVTPTRLYSFT 198 (936)
Q Consensus 178 ~~~~~~~~i~ast~~rly~f~ 198 (936)
.+.++++.++....+.-|.
T Consensus 225 --~~~~~l~sg~~dg~v~~wd 243 (344)
T 4gqb_B 225 --QQSEVFVFGDENGTVSLVD 243 (344)
T ss_dssp --SCTTEEEEEETTSEEEEEE
T ss_pred --CCCcceEEeccCCcEEEEE
Confidence 2235666666677777674
No 76
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=97.09 E-value=0.027 Score=60.23 Aligned_cols=156 Identities=9% Similarity=0.024 Sum_probs=105.1
Q ss_pred CceeEEEEe--CCEEEEEecCCeEEEEeC-CCCCceeeEcCCCCCCccceeEEEeCCCCCeEEEEeecCCCccEEEEecC
Q 002318 22 GVITCMSAG--NDVIVLGTSKGWLIRHDF-GAGDSYDIDLSAGRPGEQSIHKVFVDPGGSHCIATIVGSGGAETFYTHAK 98 (936)
Q Consensus 22 ~~i~~l~v~--~n~l~l~~~~g~l~ridl-~~~~~~~~~l~~~~~~~~~i~~i~lDp~G~hlli~~~~~~~g~~~Y~~~~ 98 (936)
..|.+++.+ ++.++.|..+|+|..+|+ .+..+..+.-+ ...|..+-+.|.|.+++.++. +|....++..
T Consensus 56 ~~v~~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~h-----~~~v~~~~~~~~~~~l~sgs~---D~~v~lWd~~ 127 (304)
T 2ynn_A 56 TPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAH-----PDYIRSIAVHPTKPYVLSGSD---DLTVKLWNWE 127 (304)
T ss_dssp SCEEEEEEEGGGTEEEEEETTSEEEEEETTTCCEEEEEECC-----SSCEEEEEECSSSSEEEEEET---TSCEEEEEGG
T ss_pred CcEEEEEEeCCCCEEEEECCCCEEEEEECCCCcEEEEEeCC-----CCcEEEEEEcCCCCEEEEECC---CCeEEEEECC
Confidence 457777665 578999999999999999 66655556554 467999999999999998888 8999888765
Q ss_pred CC-CceeccCCCCceEEEEEecCCCCCCCCcceEEEEcCCCcEEEEEEecCCcccceeeEEeeeCCCCCceeeEEEEeec
Q 002318 99 WS-KPRVLSKLKGLVVNAVAWNRQQITEASTKEIILGTDTGQLHEMAVDEKDKREKYIKLLFELNELPEAFMGLQMETAS 177 (936)
Q Consensus 99 ~~-k~k~L~klkg~~I~sVaw~~~~~~~~st~~iLiGt~~G~i~e~~i~~~~~~~~~~k~v~~l~~~~~~I~gi~~~~~~ 177 (936)
.. +.....+-....|.+|+|++.. ...++.|+.+|.|....+.... . ...+ ... ...+|..+.+...+
T Consensus 128 ~~~~~~~~~~~h~~~v~~v~~~p~~-----~~~l~sgs~D~~v~iwd~~~~~---~-~~~~-~~~-~~~~v~~~~~~~~~ 196 (304)
T 2ynn_A 128 NNWALEQTFEGHEHFVMCVAFNPKD-----PSTFASGCLDRTVKVWSLGQST---P-NFTL-TTG-QERGVNYVDYYPLP 196 (304)
T ss_dssp GTTEEEEEECCCCSCEEEEEECTTC-----TTEEEEEETTSEEEEEETTCSS---C-SEEE-ECC-CTTCEEEEEECCST
T ss_pred CCcchhhhhcccCCcEEEEEECCCC-----CCEEEEEeCCCeEEEEECCCCC---c-ccee-ccC-CcCcEEEEEEEEcC
Confidence 43 2222211234579999999532 2378889999988877664321 1 1111 111 12457777775422
Q ss_pred cCCCceEEEEEECCCeEEEEec
Q 002318 178 LSNGTRYYVMAVTPTRLYSFTG 199 (936)
Q Consensus 178 ~~~~~~~~i~ast~~rly~f~~ 199 (936)
+.++++.++....+.-|.-
T Consensus 197 ---~~~~l~s~s~D~~i~iWd~ 215 (304)
T 2ynn_A 197 ---DKPYMITASDDLTIKIWDY 215 (304)
T ss_dssp ---TCCEEEEEETTSEEEEEET
T ss_pred ---CCCEEEEEcCCCeEEEEeC
Confidence 3357777777777887753
No 77
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=97.07 E-value=0.016 Score=67.75 Aligned_cols=150 Identities=8% Similarity=0.040 Sum_probs=104.9
Q ss_pred CCceeEEEEeC--CEEEEEecCCeEEEEeCCCCCceeeEcCCCCCCccceeEEEeCCCCCeEEEEeecCCCccEEEEecC
Q 002318 21 RGVITCMSAGN--DVIVLGTSKGWLIRHDFGAGDSYDIDLSAGRPGEQSIHKVFVDPGGSHCIATIVGSGGAETFYTHAK 98 (936)
Q Consensus 21 ~~~i~~l~v~~--n~l~l~~~~g~l~ridl~~~~~~~~~l~~~~~~~~~i~~i~lDp~G~hlli~~~~~~~g~~~Y~~~~ 98 (936)
...|++++++. +.|+.|..+|.|..+|.++..+..+.-+ ...|..+-+.|.|..+++++. +|....++..
T Consensus 385 ~~~v~~~~~s~dg~~l~~~~~d~~v~~~~~~~~~~~~~~~~-----~~~v~~~~~s~d~~~l~~~~~---d~~v~~w~~~ 456 (577)
T 2ymu_A 385 SSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGH-----SSSVWGVAFSPDDQTIASASD---DKTVKLWNRN 456 (577)
T ss_dssp SSCEEEEEECTTSSCEEEEETTSEEEEECTTCCEEEEEECC-----SSCEEEEEECTTSSEEEEEET---TSEEEEEETT
T ss_pred CCCeEEEEECCCCCEEEEEeCCCEEEEEeCCCCEEEEecCC-----CCCeEEEEECCCCCEEEEEcC---CCEEEEEECC
Confidence 45689999985 4788899999999999854444444433 367999999999999998887 8888877765
Q ss_pred CCCceeccCCCCceEEEEEecCCCCCCCCcceEEEEcCCCcEEEEEEecCCcccceeeEEeeeCCCCCceeeEEEEeecc
Q 002318 99 WSKPRVLSKLKGLVVNAVAWNRQQITEASTKEIILGTDTGQLHEMAVDEKDKREKYIKLLFELNELPEAFMGLQMETASL 178 (936)
Q Consensus 99 ~~k~k~L~klkg~~I~sVaw~~~~~~~~st~~iLiGt~~G~i~e~~i~~~~~~~~~~k~v~~l~~~~~~I~gi~~~~~~~ 178 (936)
....+.+.. ....|++++|.++ ..-++.|+.+|.|....... +.++. +.-. ..+|++|.|..
T Consensus 457 ~~~~~~~~~-~~~~v~~~~~spd------~~~las~~~d~~i~iw~~~~-----~~~~~-~~~h--~~~v~~l~~s~--- 518 (577)
T 2ymu_A 457 GQLLQTLTG-HSSSVRGVAFSPD------GQTIASASDDKTVKLWNRNG-----QLLQT-LTGH--SSSVRGVAFSP--- 518 (577)
T ss_dssp SCEEEEEEC-CSSCEEEEEECTT------SCEEEEEETTSEEEEEETTS-----CEEEE-EECC--SSCEEEEEECT---
T ss_pred CCEEEEEcC-CCCCEEEEEEcCC------CCEEEEEeCCCEEEEEcCCC-----CEEEE-EeCC--CCCEEEEEEcC---
Confidence 544444433 3458999999843 23677889999887665322 12222 2223 36799999862
Q ss_pred CCCceEEEEEECCCeEEEEe
Q 002318 179 SNGTRYYVMAVTPTRLYSFT 198 (936)
Q Consensus 179 ~~~~~~~i~ast~~rly~f~ 198 (936)
+.++++.++....++-|.
T Consensus 519 --dg~~l~s~~~dg~v~lwd 536 (577)
T 2ymu_A 519 --DGQTIASASDDKTVKLWN 536 (577)
T ss_dssp --TSSCEEEEETTSEEEEEC
T ss_pred --CCCEEEEEECcCEEEEEe
Confidence 336777777777788774
No 78
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=97.06 E-value=0.018 Score=65.07 Aligned_cols=148 Identities=9% Similarity=0.075 Sum_probs=100.6
Q ss_pred CCceeEEEEeCCEEEEEecCCeEEEEeC-CCCCceeeEcCCCCCCccceeEEEeCCCCCeEEEEeecCCCccEEEEecCC
Q 002318 21 RGVITCMSAGNDVIVLGTSKGWLIRHDF-GAGDSYDIDLSAGRPGEQSIHKVFVDPGGSHCIATIVGSGGAETFYTHAKW 99 (936)
Q Consensus 21 ~~~i~~l~v~~n~l~l~~~~g~l~ridl-~~~~~~~~~l~~~~~~~~~i~~i~lDp~G~hlli~~~~~~~g~~~Y~~~~~ 99 (936)
.+.|++++.+++.++.|..+|.|..+|+ .+..+........ ....|..+-. .|.++++++. +|....++...
T Consensus 213 ~~~v~~l~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~--~~~~v~~~~~--~~~~l~s~~~---dg~i~vwd~~~ 285 (435)
T 1p22_A 213 CEAVLHLRFNNGMMVTCSKDRSIAVWDMASPTDITLRRVLVG--HRAAVNVVDF--DDKYIVSASG---DRTIKVWNTST 285 (435)
T ss_dssp CSCEEEEECCTTEEEEEETTSCEEEEECSSSSCCEEEEEECC--CSSCEEEEEE--ETTEEEEEET---TSEEEEEETTT
T ss_pred CCcEEEEEEcCCEEEEeeCCCcEEEEeCCCCCCceeeeEecC--CCCcEEEEEe--CCCEEEEEeC---CCeEEEEECCc
Confidence 4568999999999999999999999999 5554422122111 1356776666 5788888887 89888887665
Q ss_pred CCc-eeccCCCCceEEEEEecCCCCCCCCcceEEEEcCCCcEEEEEEecCCcccceeeEEeeeCCCCCceeeEEEEeecc
Q 002318 100 SKP-RVLSKLKGLVVNAVAWNRQQITEASTKEIILGTDTGQLHEMAVDEKDKREKYIKLLFELNELPEAFMGLQMETASL 178 (936)
Q Consensus 100 ~k~-k~L~klkg~~I~sVaw~~~~~~~~st~~iLiGt~~G~i~e~~i~~~~~~~~~~k~v~~l~~~~~~I~gi~~~~~~~ 178 (936)
.+. +.+. .....|.+++|+. ..++.|+.+|.|....+..+ +.+..+..-.++|+++.+.
T Consensus 286 ~~~~~~~~-~~~~~v~~~~~~~--------~~l~~g~~dg~i~iwd~~~~-------~~~~~~~~h~~~v~~~~~~---- 345 (435)
T 1p22_A 286 CEFVRTLN-GHKRGIACLQYRD--------RLVVSGSSDNTIRLWDIECG-------ACLRVLEGHEELVRCIRFD---- 345 (435)
T ss_dssp CCEEEEEE-CCSSCEEEEEEET--------TEEEEEETTSCEEEEETTTC-------CEEEEECCCSSCEEEEECC----
T ss_pred CcEEEEEc-CCCCcEEEEEeCC--------CEEEEEeCCCeEEEEECCCC-------CEEEEEeCCcCcEEEEEec----
Confidence 443 2232 2335899999962 37999999999988877543 2223333334679998883
Q ss_pred CCCceEEEEEECCCeEEEEe
Q 002318 179 SNGTRYYVMAVTPTRLYSFT 198 (936)
Q Consensus 179 ~~~~~~~i~ast~~rly~f~ 198 (936)
+ +.++.++....+.-|.
T Consensus 346 -~--~~l~sg~~dg~i~vwd 362 (435)
T 1p22_A 346 -N--KRIVSGAYDGKIKVWD 362 (435)
T ss_dssp -S--SEEEEEETTSCEEEEE
T ss_pred -C--CEEEEEeCCCcEEEEE
Confidence 2 5677777777787775
No 79
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=97.05 E-value=0.023 Score=64.23 Aligned_cols=146 Identities=10% Similarity=0.086 Sum_probs=102.1
Q ss_pred CCCceeEEEEeCCEEEEEecCCeEEEEeC-CCCCceeeEcCCCCCCccceeEEEeCCCCCeEEEEeecCCCccEEEEecC
Q 002318 20 GRGVITCMSAGNDVIVLGTSKGWLIRHDF-GAGDSYDIDLSAGRPGEQSIHKVFVDPGGSHCIATIVGSGGAETFYTHAK 98 (936)
Q Consensus 20 ~~~~i~~l~v~~n~l~l~~~~g~l~ridl-~~~~~~~~~l~~~~~~~~~i~~i~lDp~G~hlli~~~~~~~g~~~Y~~~~ 98 (936)
..+.|+|++.+++.++.|..+|.|..+|+ .+..+..+.-+ ...|..+.. .|.++++++. +|....++..
T Consensus 198 h~~~v~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~-----~~~v~~~~~--~~~~l~~~~~---dg~i~iwd~~ 267 (445)
T 2ovr_B 198 HTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQCLHVLMGH-----VAAVRCVQY--DGRRVVSGAY---DFMVKVWDPE 267 (445)
T ss_dssp CSSCEEEEEEETTEEEEEETTSEEEEEESSSCCEEEEEECC-----SSCEEEEEE--CSSCEEEEET---TSCEEEEEGG
T ss_pred CCCcEEEEEecCCEEEEEeCCCEEEEEECCCCcEEEEEcCC-----cccEEEEEE--CCCEEEEEcC---CCEEEEEECC
Confidence 34579999999999999999999999999 55544444433 356777776 5788888887 8998888765
Q ss_pred CCCc-eeccCCCCceEEEEEecCCCCCCCCcceEEEEcCCCcEEEEEEecCCcccceeeEEeeeCCCCCceeeEEEEeec
Q 002318 99 WSKP-RVLSKLKGLVVNAVAWNRQQITEASTKEIILGTDTGQLHEMAVDEKDKREKYIKLLFELNELPEAFMGLQMETAS 177 (936)
Q Consensus 99 ~~k~-k~L~klkg~~I~sVaw~~~~~~~~st~~iLiGt~~G~i~e~~i~~~~~~~~~~k~v~~l~~~~~~I~gi~~~~~~ 177 (936)
..+. +.+. .....|.+++|+ ...++.|+.+|.|....+... +.+..+.....++.++.+.
T Consensus 268 ~~~~~~~~~-~~~~~v~~~~~~--------~~~l~~~~~d~~i~i~d~~~~-------~~~~~~~~~~~~v~~~~~~--- 328 (445)
T 2ovr_B 268 TETCLHTLQ-GHTNRVYSLQFD--------GIHVVSGSLDTSIRVWDVETG-------NCIHTLTGHQSLTSGMELK--- 328 (445)
T ss_dssp GTEEEEEEC-CCSSCEEEEEEC--------SSEEEEEETTSCEEEEETTTC-------CEEEEECCCCSCEEEEEEE---
T ss_pred CCcEeEEec-CCCCceEEEEEC--------CCEEEEEeCCCeEEEEECCCC-------CEEEEEcCCcccEEEEEEe---
Confidence 5432 2232 123579999995 137999999999988876543 2223333323568888775
Q ss_pred cCCCceEEEEEECCCeEEEEe
Q 002318 178 LSNGTRYYVMAVTPTRLYSFT 198 (936)
Q Consensus 178 ~~~~~~~~i~ast~~rly~f~ 198 (936)
+ +.++.++....++-|.
T Consensus 329 --~--~~l~~~~~dg~i~vwd 345 (445)
T 2ovr_B 329 --D--NILVSGNADSTVKIWD 345 (445)
T ss_dssp --T--TEEEEEETTSCEEEEE
T ss_pred --C--CEEEEEeCCCeEEEEE
Confidence 2 4677777777777675
No 80
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=97.03 E-value=0.023 Score=63.30 Aligned_cols=153 Identities=10% Similarity=-0.003 Sum_probs=103.2
Q ss_pred ceeEEEEeC--CEEEEEecCCeEEEEeC-CCCCceeeEcCCCCCCccceeEEEeCCCCCeEEEEeecCCCccEEEEecCC
Q 002318 23 VITCMSAGN--DVIVLGTSKGWLIRHDF-GAGDSYDIDLSAGRPGEQSIHKVFVDPGGSHCIATIVGSGGAETFYTHAKW 99 (936)
Q Consensus 23 ~i~~l~v~~--n~l~l~~~~g~l~ridl-~~~~~~~~~l~~~~~~~~~i~~i~lDp~G~hlli~~~~~~~g~~~Y~~~~~ 99 (936)
.|++++.+. +.++.|..+|.|..||+ ....+..+.-+ ...|..+-..|.|.+++.++. +|....++...
T Consensus 125 ~v~~v~~s~dg~~l~s~~~d~~i~iwd~~~~~~~~~~~~h-----~~~v~~~~~~p~~~~l~s~s~---d~~v~iwd~~~ 196 (393)
T 1erj_A 125 YIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGH-----EQDIYSLDYFPSGDKLVSGSG---DRTVRIWDLRT 196 (393)
T ss_dssp BEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCC-----SSCEEEEEECTTSSEEEEEET---TSEEEEEETTT
T ss_pred eEEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEccC-----CCCEEEEEEcCCCCEEEEecC---CCcEEEEECCC
Confidence 488999974 58999999999999999 44333333322 467999999999999988887 89998887765
Q ss_pred CCceeccCCCCceEEEEEecCCCCCCCCcceEEEEcCCCcEEEEEEecCCcccceeeEEe----eeCCCCCceeeEEEEe
Q 002318 100 SKPRVLSKLKGLVVNAVAWNRQQITEASTKEIILGTDTGQLHEMAVDEKDKREKYIKLLF----ELNELPEAFMGLQMET 175 (936)
Q Consensus 100 ~k~k~L~klkg~~I~sVaw~~~~~~~~st~~iLiGt~~G~i~e~~i~~~~~~~~~~k~v~----~l~~~~~~I~gi~~~~ 175 (936)
.+...... ....+.+++|.+. +..-++.|+.+|.|....+..+. ....+- ...+-.++|+++.|..
T Consensus 197 ~~~~~~~~-~~~~v~~~~~~~~-----~~~~l~~~s~d~~v~iwd~~~~~----~~~~~~~~~~~~~~h~~~v~~v~~~~ 266 (393)
T 1erj_A 197 GQCSLTLS-IEDGVTTVAVSPG-----DGKYIAAGSLDRAVRVWDSETGF----LVERLDSENESGTGHKDSVYSVVFTR 266 (393)
T ss_dssp TEEEEEEE-CSSCEEEEEECST-----TCCEEEEEETTSCEEEEETTTCC----EEEEEC------CCCSSCEEEEEECT
T ss_pred CeeEEEEE-cCCCcEEEEEECC-----CCCEEEEEcCCCcEEEEECCCCc----EEEeecccccCCCCCCCCEEEEEECC
Confidence 44322112 2347999999842 23478889999998877654321 111110 0011135799999863
Q ss_pred eccCCCceEEEEEECCCeEEEEe
Q 002318 176 ASLSNGTRYYVMAVTPTRLYSFT 198 (936)
Q Consensus 176 ~~~~~~~~~~i~ast~~rly~f~ 198 (936)
+.++++.++....+.-|.
T Consensus 267 -----~g~~l~s~s~d~~v~~wd 284 (393)
T 1erj_A 267 -----DGQSVVSGSLDRSVKLWN 284 (393)
T ss_dssp -----TSSEEEEEETTSEEEEEE
T ss_pred -----CCCEEEEEeCCCEEEEEE
Confidence 235777777777787775
No 81
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=97.02 E-value=0.051 Score=59.63 Aligned_cols=154 Identities=8% Similarity=0.048 Sum_probs=101.0
Q ss_pred CCceeEEEEeCC--EEEEEecCCeEEEEeC-CCCCceeeEcCCCCCCccceeEEEeCC--CCCeEEEEeecCCCccEEEE
Q 002318 21 RGVITCMSAGND--VIVLGTSKGWLIRHDF-GAGDSYDIDLSAGRPGEQSIHKVFVDP--GGSHCIATIVGSGGAETFYT 95 (936)
Q Consensus 21 ~~~i~~l~v~~n--~l~l~~~~g~l~ridl-~~~~~~~~~l~~~~~~~~~i~~i~lDp--~G~hlli~~~~~~~g~~~Y~ 95 (936)
.+.|++++.+++ .++.|..+|+|..||+ .+..+..+.-+ ...|..+-+.| .|..++.++. +|....+
T Consensus 154 ~~~v~~~~~~~~~~~l~t~s~D~~v~lwd~~~~~~~~~~~~h-----~~~v~~~~~~~~~~g~~l~sgs~---Dg~v~~w 225 (354)
T 2pbi_B 154 TNYLSACSFTNSDMQILTASGDGTCALWDVESGQLLQSFHGH-----GADVLCLDLAPSETGNTFVSGGC---DKKAMVW 225 (354)
T ss_dssp SSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECC-----SSCEEEEEECCCSSCCEEEEEET---TSCEEEE
T ss_pred CCcEEEEEEeCCCCEEEEEeCCCcEEEEeCCCCeEEEEEcCC-----CCCeEEEEEEeCCCCCEEEEEeC---CCeEEEE
Confidence 345788887654 7888999999999999 55555555544 35677777765 5778887777 8999888
Q ss_pred ecCCCCceeccCCCCceEEEEEecCCCCCCCCcceEEEEcCCCcEEEEEEecCCcccceeeEEeeeCCCCCceeeEEEEe
Q 002318 96 HAKWSKPRVLSKLKGLVVNAVAWNRQQITEASTKEIILGTDTGQLHEMAVDEKDKREKYIKLLFELNELPEAFMGLQMET 175 (936)
Q Consensus 96 ~~~~~k~k~L~klkg~~I~sVaw~~~~~~~~st~~iLiGt~~G~i~e~~i~~~~~~~~~~k~v~~l~~~~~~I~gi~~~~ 175 (936)
+....+....-+.....|.+|+|++. ...++.|+.+|.|....+... + ...++.......+++.+.|.
T Consensus 226 d~~~~~~~~~~~~h~~~v~~v~~~p~------~~~l~s~s~D~~v~lwd~~~~----~-~~~~~~~~~~~~~~~~~~~s- 293 (354)
T 2pbi_B 226 DMRSGQCVQAFETHESDVNSVRYYPS------GDAFASGSDDATCRLYDLRAD----R-EVAIYSKESIIFGASSVDFS- 293 (354)
T ss_dssp ETTTCCEEEEECCCSSCEEEEEECTT------SSEEEEEETTSCEEEEETTTT----E-EEEEECCTTCCSCEEEEEEC-
T ss_pred ECCCCcEEEEecCCCCCeEEEEEeCC------CCEEEEEeCCCeEEEEECCCC----c-EEEEEcCCCcccceeEEEEe-
Confidence 87665432221223458999999943 237889999999887766432 1 11222222212356777765
Q ss_pred eccCCCceEEEEEECCCeEEEEe
Q 002318 176 ASLSNGTRYYVMAVTPTRLYSFT 198 (936)
Q Consensus 176 ~~~~~~~~~~i~ast~~rly~f~ 198 (936)
.+.++++.++....++-|.
T Consensus 294 ----~~g~~l~~g~~d~~i~vwd 312 (354)
T 2pbi_B 294 ----LSGRLLFAGYNDYTINVWD 312 (354)
T ss_dssp ----TTSSEEEEEETTSCEEEEE
T ss_pred ----CCCCEEEEEECCCcEEEEE
Confidence 2235677767777777775
No 82
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=97.00 E-value=0.013 Score=64.67 Aligned_cols=161 Identities=6% Similarity=-0.042 Sum_probs=98.3
Q ss_pred CCCceeEEEEeC-CEEEEEecCCeEEEEeC-CCCCceeeEcCCCCCCccceeEEEeCCCCCeEEEEeecCCCccEEEEec
Q 002318 20 GRGVITCMSAGN-DVIVLGTSKGWLIRHDF-GAGDSYDIDLSAGRPGEQSIHKVFVDPGGSHCIATIVGSGGAETFYTHA 97 (936)
Q Consensus 20 ~~~~i~~l~v~~-n~l~l~~~~g~l~ridl-~~~~~~~~~l~~~~~~~~~i~~i~lDp~G~hlli~~~~~~~g~~~Y~~~ 97 (936)
..+.|++++.++ +.++.|..+|+|..||+ .+........... .-...|..+-+.|.|.+++.++. +|....++.
T Consensus 93 ~~~~V~~~~~s~d~~~l~~s~dg~v~lWd~~~~~~~~~~~~~~~-~h~~~V~~v~~spdg~~l~sgs~---dg~v~iwd~ 168 (357)
T 4g56_B 93 TEAGVTDVAWVSEKGILVASDSGAVELWEILEKESLLVNKFAKY-EHDDIVKTLSVFSDGTQAVSGGK---DFSVKVWDL 168 (357)
T ss_dssp CSSCEEEEEEETTTEEEEEETTSCEEEC--------CCCCEEEC-CCSSCEEEEEECSSSSEEEEEET---TSCEEEEET
T ss_pred CCCCEEEEEEcCCCCEEEEECCCEEEEeeccccceeEEEeeccC-CCCCCEEEEEECCCCCEEEEEeC---CCeEEEEEC
Confidence 345689999875 56777888999999999 4443221111111 11468999999999999998887 899988877
Q ss_pred CCCCceeccCCCCceEEEEEecCCCCCCCCcceEEEEcCCCcEEEEEEecCCcccceeeEEeeeCCCCCceeeEEEEeec
Q 002318 98 KWSKPRVLSKLKGLVVNAVAWNRQQITEASTKEIILGTDTGQLHEMAVDEKDKREKYIKLLFELNELPEAFMGLQMETAS 177 (936)
Q Consensus 98 ~~~k~k~L~klkg~~I~sVaw~~~~~~~~st~~iLiGt~~G~i~e~~i~~~~~~~~~~k~v~~l~~~~~~I~gi~~~~~~ 177 (936)
...+....-+.....|.+|+|.+.. ...++.|+.+|.|....+...+ .... +.......+|+++.|..
T Consensus 169 ~~~~~~~~~~~h~~~v~~v~~s~~~-----~~~~~s~~~dg~v~~wd~~~~~----~~~~-~~~~~~~~~v~~v~~sp-- 236 (357)
T 4g56_B 169 SQKAVLKSYNAHSSEVNCVAACPGK-----DTIFLSCGEDGRILLWDTRKPK----PATR-IDFCASDTIPTSVTWHP-- 236 (357)
T ss_dssp TTTEEEEEECCCSSCEEEEEECTTC-----SSCEEEEETTSCEEECCTTSSS----CBCB-CCCTTCCSCEEEEEECT--
T ss_pred CCCcEEEEEcCCCCCEEEEEEccCC-----CceeeeeccCCceEEEECCCCc----eeee-eeeccccccccchhhhh--
Confidence 6554322212233589999998432 2367888999988765543321 1111 12222235688888862
Q ss_pred cCCCceEEEEEECCCeEEEEe
Q 002318 178 LSNGTRYYVMAVTPTRLYSFT 198 (936)
Q Consensus 178 ~~~~~~~~i~ast~~rly~f~ 198 (936)
....+++.++....++-|.
T Consensus 237 --~~~~~la~g~~d~~i~~wd 255 (357)
T 4g56_B 237 --EKDDTFACGDETGNVSLVN 255 (357)
T ss_dssp --TSTTEEEEEESSSCEEEEE
T ss_pred --cccceEEEeecccceeEEE
Confidence 2234666666666777664
No 83
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=96.99 E-value=0.07 Score=62.49 Aligned_cols=61 Identities=15% Similarity=0.053 Sum_probs=34.5
Q ss_pred eehhhhccccHHHHHHHHHhcCHHHHHHHhhccCCCHHHHHHHHHHHHHHHhhcccCCChHhHHHHHHHHHh
Q 002318 690 CVHIYGMMSMHEEAVALALQVDPELAMAEADKVEDDEDLRKKLWLMVAKHVIEQEKGTKRENIRKAIAFLKE 761 (936)
Q Consensus 690 ~v~L~~~~g~~~eAl~l~l~~di~lA~~~a~~~~~d~~~~kkLWl~ll~~~i~~~~~~~~~~i~~~l~~L~~ 761 (936)
.+.+|.+.|++++|+.++-+ |.+.......+++..-..|..++..+... ++.+.++..+++
T Consensus 481 l~~~~~~~g~~~~A~~~~~~-----~~~~~~~~~~~p~~~~~~~~~l~~~~~~~------g~~~~A~~~~~~ 541 (597)
T 2xpi_A 481 LGVVAFNKSDMQTAINHFQN-----ALLLVKKTQSNEKPWAATWANLGHAYRKL------KMYDAAIDALNQ 541 (597)
T ss_dssp HHHHHHHTTCHHHHHHHHHH-----HHHHHHHSCCCSGGGHHHHHHHHHHHHHT------TCHHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHH-----HHHhhhccccchhhHHHHHHHHHHHHHHh------cCHHHHHHHHHH
Confidence 45567777788777776543 22222111112222234788888877765 356777766644
No 84
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=96.99 E-value=0.02 Score=64.99 Aligned_cols=146 Identities=12% Similarity=0.144 Sum_probs=102.1
Q ss_pred CCceeEEEEeCCEEEEEecCCeEEEEeC-CCCCceeeEcCCCCCCccceeEEEeCCCCCeEEEEeecCCCccEEEEecCC
Q 002318 21 RGVITCMSAGNDVIVLGTSKGWLIRHDF-GAGDSYDIDLSAGRPGEQSIHKVFVDPGGSHCIATIVGSGGAETFYTHAKW 99 (936)
Q Consensus 21 ~~~i~~l~v~~n~l~l~~~~g~l~ridl-~~~~~~~~~l~~~~~~~~~i~~i~lDp~G~hlli~~~~~~~g~~~Y~~~~~ 99 (936)
...+.++...++.++.|..+|.|..+|+ .+..+..+.-+ ...|..+.++|.|..+++++. +|....++...
T Consensus 270 ~~~v~~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~-----~~~v~~~~~~~~~~~l~sg~~---dg~i~vwd~~~ 341 (464)
T 3v7d_B 270 MASVRTVSGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGH-----TDRIYSTIYDHERKRCISASM---DTTIRIWDLEN 341 (464)
T ss_dssp SSCEEEEEEETTEEEEEETTSCEEEEETTTTEEEEEECCC-----SSCEEEEEEETTTTEEEEEET---TSCEEEEETTT
T ss_pred cceEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEecCC-----CCCEEEEEEcCCCCEEEEEeC---CCcEEEEECCC
Confidence 3568899999999999999999999999 55444444333 467999999999999999888 89988887655
Q ss_pred CCceeccCCC--CceEEEEEecCCCCCCCCcceEEEEcCCCcEEEEEEecCCcccceeeEEeeeCCCCCceeeEEEEeec
Q 002318 100 SKPRVLSKLK--GLVVNAVAWNRQQITEASTKEIILGTDTGQLHEMAVDEKDKREKYIKLLFELNELPEAFMGLQMETAS 177 (936)
Q Consensus 100 ~k~k~L~klk--g~~I~sVaw~~~~~~~~st~~iLiGt~~G~i~e~~i~~~~~~~~~~k~v~~l~~~~~~I~gi~~~~~~ 177 (936)
.+ .+..++ ...|.+++|++ ..++.|+.+|.|....+... +..+.... +.++..+.+..
T Consensus 342 ~~--~~~~~~~h~~~v~~~~~~~--------~~l~s~s~dg~v~vwd~~~~-------~~~~~~~~-~~~~~~~~~~~-- 401 (464)
T 3v7d_B 342 GE--LMYTLQGHTALVGLLRLSD--------KFLVSAAADGSIRGWDANDY-------SRKFSYHH-TNLSAITTFYV-- 401 (464)
T ss_dssp TE--EEEEECCCSSCEEEEEECS--------SEEEEEETTSEEEEEETTTC-------CEEEEEEC-TTCCCEEEEEE--
T ss_pred Cc--EEEEEeCCCCcEEEEEEcC--------CEEEEEeCCCcEEEEECCCC-------ceeeeecC-CCCccEEEEEe--
Confidence 43 222333 35899999982 27899999999887766542 12223322 24566666653
Q ss_pred cCCCceEEEEEECCCeEEEEe
Q 002318 178 LSNGTRYYVMAVTPTRLYSFT 198 (936)
Q Consensus 178 ~~~~~~~~i~ast~~rly~f~ 198 (936)
+.++++..+ ...++-|.
T Consensus 402 ---~~~~l~~~~-dg~i~iwd 418 (464)
T 3v7d_B 402 ---SDNILVSGS-ENQFNIYN 418 (464)
T ss_dssp ---CSSEEEEEE-TTEEEEEE
T ss_pred ---CCCEEEEec-CCeEEEEE
Confidence 124555544 67788775
No 85
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=96.97 E-value=0.092 Score=57.82 Aligned_cols=330 Identities=14% Similarity=0.088 Sum_probs=161.9
Q ss_pred HHHchhhHHHHHHhcCC-----hhhHHHHHHHHHHHHHhcCCHHHHHHHHHHhc--CCC---ChHHHHHHhcCcChHHHH
Q 002318 370 VYLDMKEYAAALANCRD-----PLQRDQVYLVQAEAAFATKDFHRAASFYAKIN--YIL---SFEEITLKFISVSEQDAL 439 (936)
Q Consensus 370 ~ll~~~~f~~Al~~~~~-----~~~~~~I~~~~~~~L~~~g~y~~Aa~~y~~~~--~~~---~~E~v~lkFl~~~~~~~L 439 (936)
.++..|+|++|++.++. |. -..+....|..++..|++++|...+.+.. +.. .|-....-+...++.+.-
T Consensus 8 ~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~~~~A 86 (388)
T 1w3b_A 8 REYQAGDFEAAERHCMQLWRQEPD-NTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEA 86 (388)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHH
Confidence 47889999999998753 22 23566677888999999999999887654 111 122333334445555444
Q ss_pred HHHHHHHhhcccCchhHHHHHHHHHHHHHHHHHHhhhhcccchhhccchHHHHHHHHHHHHHHhcccccCC-HHHHHHHH
Q 002318 440 RTFLLRKLDNLAKDDKCQITMISTWATELYLDKINRLLLEDDTALENRSSEYQSIMREFRAFLSDCKDVLD-EATTMKLL 518 (936)
Q Consensus 440 ~~YL~~~l~~l~~~~~~~~~lL~~Wl~ely~~~l~~~~~e~~~~~~~~~~~~~~~~~~l~~fl~~~~~~ld-~~tv~~ll 518 (936)
..++..-+..-+.+... ...+..+|.. ..+. .+....+++.+....+... ....-.++
T Consensus 87 ~~~~~~al~~~p~~~~~-----~~~l~~~~~~-~g~~---------------~~A~~~~~~al~~~p~~~~~~~~l~~~~ 145 (388)
T 1w3b_A 87 IEHYRHALRLKPDFIDG-----YINLAAALVA-AGDM---------------EGAVQAYVSALQYNPDLYCVRSDLGNLL 145 (388)
T ss_dssp HHHHHHHHHHCTTCHHH-----HHHHHHHHHH-HSCS---------------SHHHHHHHHHHHHCTTCTHHHHHHHHHH
T ss_pred HHHHHHHHHcCcchHHH-----HHHHHHHHHH-cCCH---------------HHHHHHHHHHHHhCCCcHHHHHHHHHHH
Confidence 44444433322222111 1122233321 1111 0112223333332221111 11233456
Q ss_pred HHcCChhHHHHHHHhh--------hhHHHHHHHHHhcccHHHHHHHHhCC----CCchhhHHhhHHHHHh-HChHHHHHH
Q 002318 519 ESYGRVEELVFFASLK--------EQHEIVVHHYIQQGEAKKALQMLRKP----AVPIDLQYKFAPDLIM-LDAYETVES 585 (936)
Q Consensus 519 ~~~g~~e~~l~~a~~~--------~dy~~ll~~yi~~~~~~~AL~~L~~~----~d~~~li~k~~~~Ll~-~~p~~ti~l 585 (936)
...|+.++++.+.+.. .-|..+...|...|++++|++.+.+. ++..+.+...+..+.. ...++++..
T Consensus 146 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~ 225 (388)
T 1w3b_A 146 KALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAA 225 (388)
T ss_dssp HTTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHH
T ss_pred HHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHH
Confidence 6678888887765542 22455667788888888888877642 2323444444444432 334455555
Q ss_pred HHccCCCCCCcchhH--h-hhcCCCCCCCCChHHHHHHHHHHHhhcCCCCHhHHHHHHHHhhcCCChHHHHHHHHHhhCC
Q 002318 586 WMTTNNLNPRKLIPA--M-MRYSSEPHAKNETHEVIKYLEFCVHRLHNEDPGVHNLLLSLYAKQEDDSALLRFLQCKFGK 662 (936)
Q Consensus 586 l~~~~~ld~~~li~~--L-~~~~~~~~~~~~~~~~~~YLe~li~~~~~~~~~~hn~ll~Ly~~~~~~~~Ll~fL~~~~~~ 662 (936)
+.+.-.++|...... + ..+.. ......++.+++..+...+ ..+..+..+..+|.+.++.++-+.+++..-..
T Consensus 226 ~~~al~~~p~~~~~~~~l~~~~~~----~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 300 (388)
T 1w3b_A 226 YLRALSLSPNHAVVHGNLACVYYE----QGLIDLAIDTYRRAIELQP-HFPDAYCNLANALKEKGSVAEAEDCYNTALRL 300 (388)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHTCS-SCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred HHHHHhhCcCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 433222333321110 0 00000 0134567777777765543 34556666666666654444555555443000
Q ss_pred CCCCCCcccCChHHHHHHHHhcCcceeeehhhhccccHHHHHHHHHhcCHHHHHHHhhccCCCHHHHHHHHHHHHHHHhh
Q 002318 663 GRENGPEFFYDPKYALRLCLKEKRMRACVHIYGMMSMHEEAVALALQVDPELAMAEADKVEDDEDLRKKLWLMVAKHVIE 742 (936)
Q Consensus 663 ~~~~~~~~~yd~~~aLrlc~~~~~~~~~v~L~~~~g~~~eAl~l~l~~di~lA~~~a~~~~~d~~~~kkLWl~ll~~~i~ 742 (936)
.+-+.+.. .....+|.+.|++++|+..+-+ |.+ ...++.. .|..++..+..
T Consensus 301 -------~p~~~~~~----------~~l~~~~~~~g~~~~A~~~~~~-----al~---~~p~~~~----~~~~l~~~~~~ 351 (388)
T 1w3b_A 301 -------CPTHADSL----------NNLANIKREQGNIEEAVRLYRK-----ALE---VFPEFAA----AHSNLASVLQQ 351 (388)
T ss_dssp -------CTTCHHHH----------HHHHHHHHTTTCHHHHHHHHHH-----HTT---SCTTCHH----HHHHHHHHHHT
T ss_pred -------CcccHHHH----------HHHHHHHHHcCCHHHHHHHHHH-----HHh---cCCCcHH----HHHHHHHHHHH
Confidence 01111111 1223456677777777765543 111 1112332 67777776665
Q ss_pred cccCCChHhHHHHHHHHHh
Q 002318 743 QEKGTKRENIRKAIAFLKE 761 (936)
Q Consensus 743 ~~~~~~~~~i~~~l~~L~~ 761 (936)
. ++..+++..+++
T Consensus 352 ~------g~~~~A~~~~~~ 364 (388)
T 1w3b_A 352 Q------GKLQEALMHYKE 364 (388)
T ss_dssp T------TCCHHHHHHHHH
T ss_pred c------CCHHHHHHHHHH
Confidence 4 345566655543
No 86
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=96.97 E-value=0.01 Score=72.76 Aligned_cols=162 Identities=10% Similarity=0.105 Sum_probs=107.6
Q ss_pred CCceeEEEEe----CCEEEEEecCCeEEEEeC-CCCCceeeEcCCCCCCccceeEEEeCCC-------------CCeEEE
Q 002318 21 RGVITCMSAG----NDVIVLGTSKGWLIRHDF-GAGDSYDIDLSAGRPGEQSIHKVFVDPG-------------GSHCIA 82 (936)
Q Consensus 21 ~~~i~~l~v~----~n~l~l~~~~g~l~ridl-~~~~~~~~~l~~~~~~~~~i~~i~lDp~-------------G~hlli 82 (936)
.+.|+|++++ ++.++.|..+|.|..+|+ .+.......+.. ....|..+..+|. |..+++
T Consensus 99 ~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~~~~~~~~~---~~~~v~~l~~~p~~~~~~~~~~~~~d~~~l~s 175 (753)
T 3jro_A 99 SASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDA---HAIGVNSASWAPATIEEDGEHNGTKESRKFVT 175 (753)
T ss_dssp SSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSCCCCEEEEC---CSSCEEEEEECCCC---------CGGGCCEEE
T ss_pred CCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCCcceeEeec---CCCceEEEEecCcccccccccccCCCCCEEEE
Confidence 4579999998 459999999999999999 553333333321 1367999999994 888888
Q ss_pred EeecCCCccEEEEecCCCC--ceeccCCC--CceEEEEEecCCCCCCCCcceEEEEcCCCcEEEEEEecCCcccceeeEE
Q 002318 83 TIVGSGGAETFYTHAKWSK--PRVLSKLK--GLVVNAVAWNRQQITEASTKEIILGTDTGQLHEMAVDEKDKREKYIKLL 158 (936)
Q Consensus 83 ~~~~~~~g~~~Y~~~~~~k--~k~L~klk--g~~I~sVaw~~~~~~~~st~~iLiGt~~G~i~e~~i~~~~~~~~~~k~v 158 (936)
++. +|....++..... ...+..++ ...|++++|++.. ....-++.|+.+|.|....+.... ......+
T Consensus 176 gs~---dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~---~~~~~l~s~s~Dg~I~iwd~~~~~--~~~~~~~ 247 (753)
T 3jro_A 176 GGA---DNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTV---LLRSYLASVSQDRTCIIWTQDNEQ--GPWKKTL 247 (753)
T ss_dssp EET---TSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCC---SSSEEEEEEESSSCEEEEEESSSS--SCCBCCB
T ss_pred EEC---CCeEEEEeccCCcccceeeeeecCCCCcEEEEEeccCC---CCCCEEEEEecCCEEEEecCCCCC--CcceeEE
Confidence 887 8988777654332 12333333 3579999999532 013478888999999988876542 1112233
Q ss_pred eeeCCCCCceeeEEEEeeccCCCceEEEEEECCCeEEEEe
Q 002318 159 FELNELPEAFMGLQMETASLSNGTRYYVMAVTPTRLYSFT 198 (936)
Q Consensus 159 ~~l~~~~~~I~gi~~~~~~~~~~~~~~i~ast~~rly~f~ 198 (936)
......+++|+++.|.. +.++++.++....++-|.
T Consensus 248 ~~~~~~~~~v~~l~~sp-----dg~~l~s~s~Dg~I~vwd 282 (753)
T 3jro_A 248 LKEEKFPDVLWRASWSL-----SGNVLALSGGDNKVTLWK 282 (753)
T ss_dssp SSSSCCSSCCCCEEECT-----TTCCEEEECSSSCEECCB
T ss_pred eccCCCCCceEEEEEcC-----CCCEEEEEcCCCEEEEEe
Confidence 33333346799999963 235666666677777675
No 87
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=96.95 E-value=0.04 Score=62.22 Aligned_cols=161 Identities=11% Similarity=0.069 Sum_probs=103.8
Q ss_pred CCceeEEEEe---CCEEEEEecCCeEEEEeC-CCC---CceeeEcCCCCCCccceeEEEeCCCCCeEEEEeecCCCccEE
Q 002318 21 RGVITCMSAG---NDVIVLGTSKGWLIRHDF-GAG---DSYDIDLSAGRPGEQSIHKVFVDPGGSHCIATIVGSGGAETF 93 (936)
Q Consensus 21 ~~~i~~l~v~---~n~l~l~~~~g~l~ridl-~~~---~~~~~~l~~~~~~~~~i~~i~lDp~G~hlli~~~~~~~g~~~ 93 (936)
...|.+++.+ +++++.+..+|.|..+|+ .+. .+..+..+ ...|+.+-..|.|.+++++.. .+|...
T Consensus 231 ~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~-----~~~v~~i~~~p~~~~~l~tg~--~dg~v~ 303 (430)
T 2xyi_A 231 TAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAH-----TAEVNCLSFNPYSEFILATGS--ADKTVA 303 (430)
T ss_dssp SSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCSSSCSEEEECC-----SSCEEEEEECSSCTTEEEEEE--TTSEEE
T ss_pred CCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCCCcceeEeecC-----CCCeEEEEeCCCCCCEEEEEe--CCCeEE
Confidence 3468999995 468889999999999999 442 23334333 467999999999998665543 178887
Q ss_pred EEecCCC--CceeccCCCCceEEEEEecCCCCCCCCcceEEEEcCCCcEEEEEEecCCcc-------cceeeEEeeeCCC
Q 002318 94 YTHAKWS--KPRVLSKLKGLVVNAVAWNRQQITEASTKEIILGTDTGQLHEMAVDEKDKR-------EKYIKLLFELNEL 164 (936)
Q Consensus 94 Y~~~~~~--k~k~L~klkg~~I~sVaw~~~~~~~~st~~iLiGt~~G~i~e~~i~~~~~~-------~~~~k~v~~l~~~ 164 (936)
.+..... ....+.. ....|.+|+|++.. ..-++.|+.+|.|....+...... +.....++...+-
T Consensus 304 vwd~~~~~~~~~~~~~-h~~~v~~i~~sp~~-----~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h 377 (430)
T 2xyi_A 304 LWDLRNLKLKLHSFES-HKDEIFQVQWSPHN-----ETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGH 377 (430)
T ss_dssp EEETTCTTSCSEEEEC-CSSCEEEEEECSSC-----TTEEEEEETTSCCEEEEGGGTTCCCCHHHHHHCCTTEEEECCCC
T ss_pred EEeCCCCCCCeEEeec-CCCCEEEEEECCCC-----CCEEEEEeCCCcEEEEeCCCCccccCccccccCCcceEEEcCCC
Confidence 7776542 2333332 34589999999531 124777888999988887642110 0001334444433
Q ss_pred CCceeeEEEEeeccCCCceEEEEEECCCeEEEEe
Q 002318 165 PEAFMGLQMETASLSNGTRYYVMAVTPTRLYSFT 198 (936)
Q Consensus 165 ~~~I~gi~~~~~~~~~~~~~~i~ast~~rly~f~ 198 (936)
.++|+++.|.. .....++.++....+.-|.
T Consensus 378 ~~~v~~~~~~p----~~~~~l~s~s~dg~i~iw~ 407 (430)
T 2xyi_A 378 TAKISDFSWNP----NEPWIICSVSEDNIMQVWQ 407 (430)
T ss_dssp SSCEEEEEECS----SSTTEEEEEETTSEEEEEE
T ss_pred CCCceEEEECC----CCCCEEEEEECCCCEEEeE
Confidence 36799999973 2222555556677777674
No 88
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=96.95 E-value=0.016 Score=64.60 Aligned_cols=154 Identities=9% Similarity=0.088 Sum_probs=101.3
Q ss_pred eeEEEEeCCEEEE---EecCCeEEEEeC-CCCCc-eeeEcCCCCCCccceeEEEeCC-CCCeEEEEeecCCCccEEEEec
Q 002318 24 ITCMSAGNDVIVL---GTSKGWLIRHDF-GAGDS-YDIDLSAGRPGEQSIHKVFVDP-GGSHCIATIVGSGGAETFYTHA 97 (936)
Q Consensus 24 i~~l~v~~n~l~l---~~~~g~l~ridl-~~~~~-~~~~l~~~~~~~~~i~~i~lDp-~G~hlli~~~~~~~g~~~Y~~~ 97 (936)
..+++++.+.+.+ |..+|.|..+|+ ..... ..+..- ..-...|..+-.+| .|..+++++. +|....++.
T Consensus 37 ~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~~~~~~--~~h~~~V~~~~~~p~~~~~l~s~s~---dg~v~vw~~ 111 (402)
T 2aq5_A 37 SGFCAVNPKFMALICEASGGGAFLVLPLGKTGRVDKNVPLV--CGHTAPVLDIAWCPHNDNVIASGSE---DCTVMVWEI 111 (402)
T ss_dssp SCSEEECSSEEEEEBCCSSSCCEEEEETTCCEECCTTCCCB--CCCSSCEEEEEECTTCTTEEEEEET---TSEEEEEEC
T ss_pred CCcEEECCCeEEEEEEEcCCCEEEEEECccCCCCCCCCceE--ecCCCCEEEEEeCCCCCCEEEEEeC---CCeEEEEEc
Confidence 3568888888766 456899999999 43222 111111 11246899999999 8888888887 898888776
Q ss_pred CCCCc-----eeccCCC--CceEEEEEecCCCCCCCCcceEEEEcCCCcEEEEEEecCCcccceeeEEeee--CCCCCce
Q 002318 98 KWSKP-----RVLSKLK--GLVVNAVAWNRQQITEASTKEIILGTDTGQLHEMAVDEKDKREKYIKLLFEL--NELPEAF 168 (936)
Q Consensus 98 ~~~k~-----k~L~klk--g~~I~sVaw~~~~~~~~st~~iLiGt~~G~i~e~~i~~~~~~~~~~k~v~~l--~~~~~~I 168 (936)
...+. +.+..+. ...|.+++|++.. ..-++.|+.+|.|....+... +.+..+ ..-+++|
T Consensus 112 ~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~-----~~~l~s~~~dg~i~iwd~~~~-------~~~~~~~~~~~~~~v 179 (402)
T 2aq5_A 112 PDGGLVLPLREPVITLEGHTKRVGIVAWHPTA-----QNVLLSAGCDNVILVWDVGTG-------AAVLTLGPDVHPDTI 179 (402)
T ss_dssp CTTCCSSCBCSCSEEEECCSSCEEEEEECSSB-----TTEEEEEETTSCEEEEETTTT-------EEEEEECTTTCCSCE
T ss_pred cCCCCccccCCceEEecCCCCeEEEEEECcCC-----CCEEEEEcCCCEEEEEECCCC-------CccEEEecCCCCCce
Confidence 54321 2222223 3589999999431 136788899999988776543 223334 3234679
Q ss_pred eeEEEEeeccCCCceEEEEEECCCeEEEEec
Q 002318 169 MGLQMETASLSNGTRYYVMAVTPTRLYSFTG 199 (936)
Q Consensus 169 ~gi~~~~~~~~~~~~~~i~ast~~rly~f~~ 199 (936)
+++.|.. +.+.++.++....++-|.-
T Consensus 180 ~~~~~~~-----~~~~l~~~~~d~~i~iwd~ 205 (402)
T 2aq5_A 180 YSVDWSR-----DGALICTSCRDKRVRVIEP 205 (402)
T ss_dssp EEEEECT-----TSSCEEEEETTSEEEEEET
T ss_pred EEEEECC-----CCCEEEEEecCCcEEEEeC
Confidence 9999973 2356777777888887753
No 89
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=96.93 E-value=0.022 Score=61.14 Aligned_cols=155 Identities=12% Similarity=0.116 Sum_probs=100.3
Q ss_pred CCceeEEEEeCC----EEEEEecCCeEEEEeC-CCCCceeeEcCCCCCCccceeEEEeCCCCCeEEEEeecCCCccEEEE
Q 002318 21 RGVITCMSAGND----VIVLGTSKGWLIRHDF-GAGDSYDIDLSAGRPGEQSIHKVFVDPGGSHCIATIVGSGGAETFYT 95 (936)
Q Consensus 21 ~~~i~~l~v~~n----~l~l~~~~g~l~ridl-~~~~~~~~~l~~~~~~~~~i~~i~lDp~G~hlli~~~~~~~g~~~Y~ 95 (936)
.+.+++++.+.+ +++-+..+|.|..+|+ .+..+..+.-+ ...|..+-++|.|..++.++. +|....+
T Consensus 171 ~~~v~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~h-----~~~v~~~~~s~~~~~l~s~s~---Dg~i~iw 242 (340)
T 4aow_A 171 SEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIGH-----TGYLNTVTVSPDGSLCASGGK---DGQAMLW 242 (340)
T ss_dssp SSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTTEEEEEECCC-----SSCEEEEEECTTSSEEEEEET---TCEEEEE
T ss_pred cCcccceEEccCCCCcEEEEEcCCCEEEEEECCCCceeeEecCC-----CCcEEEEEECCCCCEEEEEeC---CCeEEEE
Confidence 345778877543 5667778899999999 44433333322 367999999999999888887 8998887
Q ss_pred ecCCCCc-eeccCCCCceEEEEEecCCCCCCCCcceEEEEcCCCcEEEEEEecCCcccceee---EEeeeCCCCCceeeE
Q 002318 96 HAKWSKP-RVLSKLKGLVVNAVAWNRQQITEASTKEIILGTDTGQLHEMAVDEKDKREKYIK---LLFELNELPEAFMGL 171 (936)
Q Consensus 96 ~~~~~k~-k~L~klkg~~I~sVaw~~~~~~~~st~~iLiGt~~G~i~e~~i~~~~~~~~~~k---~v~~l~~~~~~I~gi 171 (936)
.....+. +.+. .+..|.+++|.+. +.++.|+.+|.|....+...... ..++ .......-+.+|+++
T Consensus 243 d~~~~~~~~~~~--~~~~v~~~~~~~~-------~~~~~~~~d~~i~iwd~~~~~~~-~~~~~~~~~~~~~~h~~~v~~l 312 (340)
T 4aow_A 243 DLNEGKHLYTLD--GGDIINALCFSPN-------RYWLCAATGPSIKIWDLEGKIIV-DELKQEVISTSSKAEPPQCTSL 312 (340)
T ss_dssp ETTTTEEEEEEE--CSSCEEEEEECSS-------SSEEEEEETTEEEEEETTTTEEE-EEECCC-------CCCCCEEEE
T ss_pred EeccCceeeeec--CCceEEeeecCCC-------CceeeccCCCEEEEEECCCCeEE-EeccccceeeeccCCCCCEEEE
Confidence 7655432 2222 2357999999842 47899999999887766543100 0000 000111224679999
Q ss_pred EEEeeccCCCceEEEEEECCCeEEEEe
Q 002318 172 QMETASLSNGTRYYVMAVTPTRLYSFT 198 (936)
Q Consensus 172 ~~~~~~~~~~~~~~i~ast~~rly~f~ 198 (936)
.|.. +.++++-++....++-|.
T Consensus 313 ~~s~-----dg~~l~sgs~Dg~v~iW~ 334 (340)
T 4aow_A 313 AWSA-----DGQTLFAGYTDNLVRVWQ 334 (340)
T ss_dssp EECT-----TSSEEEEEETTSCEEEEE
T ss_pred EECC-----CCCEEEEEeCCCEEEEEe
Confidence 8862 336777777777777774
No 90
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=96.93 E-value=0.018 Score=67.63 Aligned_cols=153 Identities=10% Similarity=0.051 Sum_probs=102.4
Q ss_pred CCCc-eeEEEEeC----CEEEEEecCCeEEEEeC-CC--------CCceeeEcCCCCCCccceeEEEeCCCCCeEEEEee
Q 002318 20 GRGV-ITCMSAGN----DVIVLGTSKGWLIRHDF-GA--------GDSYDIDLSAGRPGEQSIHKVFVDPGGSHCIATIV 85 (936)
Q Consensus 20 ~~~~-i~~l~v~~----n~l~l~~~~g~l~ridl-~~--------~~~~~~~l~~~~~~~~~i~~i~lDp~G~hlli~~~ 85 (936)
..+. |+|++.+. +.|+.|..+|.|..||+ .+ .....+..+ ...|..+-++|.|..+++++.
T Consensus 62 h~~~~v~~~~~sp~~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~-----~~~v~~~~~s~~~~~l~~~~~ 136 (615)
T 1pgu_A 62 HGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVL-----AGPISDISWDFEGRRLCVVGE 136 (615)
T ss_dssp TTTSCEEEEEECSSTTCCEEEEEETTSEEEEEEEEEEGGGTEEEEEEEEEEECC-----SSCEEEEEECTTSSEEEEEEC
T ss_pred CCCceEEEEEECcCCCCCEEEEecCCCEEEEEeCCCCcccccccccccchhhcc-----cccEEEEEEeCCCCEEEEecc
Confidence 3467 99999987 78999999999999999 43 112222222 468999999999999998886
Q ss_pred cCCC----ccEEEEecCCCCceeccCCCCceEEEEEecCCCCCCCCcceEEEEcCCCcEEEEEEecCCcccceeeEEeee
Q 002318 86 GSGG----AETFYTHAKWSKPRVLSKLKGLVVNAVAWNRQQITEASTKEIILGTDTGQLHEMAVDEKDKREKYIKLLFEL 161 (936)
Q Consensus 86 ~~~~----g~~~Y~~~~~~k~k~L~klkg~~I~sVaw~~~~~~~~st~~iLiGt~~G~i~e~~i~~~~~~~~~~k~v~~l 161 (936)
+ |..+.+. .....+.+.. ....|.+++|++.. ...++.|+.+|.|....+... +.+..+
T Consensus 137 ---~~~~~~~v~~~d-~~~~~~~~~~-~~~~v~~~~~~~~~-----~~~l~~~~~d~~v~vwd~~~~-------~~~~~~ 199 (615)
T 1pgu_A 137 ---GRDNFGVFISWD-SGNSLGEVSG-HSQRINACHLKQSR-----PMRSMTVGDDGSVVFYQGPPF-------KFSASD 199 (615)
T ss_dssp ---CSSCSEEEEETT-TCCEEEECCS-CSSCEEEEEECSSS-----SCEEEEEETTTEEEEEETTTB-------EEEEEE
T ss_pred ---CCCCccEEEEEE-CCCcceeeec-CCccEEEEEECCCC-----CcEEEEEeCCCcEEEEeCCCc-------ceeeee
Confidence 4 4554444 2222333332 34589999999431 226888999999888765432 223334
Q ss_pred CCCCC---ceeeEEEEeeccCCCceEEEEEECCCeEEEEe
Q 002318 162 NELPE---AFMGLQMETASLSNGTRYYVMAVTPTRLYSFT 198 (936)
Q Consensus 162 ~~~~~---~I~gi~~~~~~~~~~~~~~i~ast~~rly~f~ 198 (936)
....+ +|+++.|.. .+.++++.++....++-|.
T Consensus 200 ~~~~~~~~~v~~~~~~~----~~~~~l~~~~~dg~i~vwd 235 (615)
T 1pgu_A 200 RTHHKQGSFVRDVEFSP----DSGEFVITVGSDRKISCFD 235 (615)
T ss_dssp CSSSCTTCCEEEEEECS----TTCCEEEEEETTCCEEEEE
T ss_pred cccCCCCceEEEEEECC----CCCCEEEEEeCCCeEEEEE
Confidence 33234 799999973 1135777777777788776
No 91
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=96.88 E-value=0.015 Score=64.78 Aligned_cols=147 Identities=7% Similarity=-0.025 Sum_probs=98.6
Q ss_pred EEEEeCCEEEEEecCCeEEEEeC-CCCCceeeEcCCCCCCccceeEEEeCCCCCeEEEEeecCCCccEEEEecCCCCcee
Q 002318 26 CMSAGNDVIVLGTSKGWLIRHDF-GAGDSYDIDLSAGRPGEQSIHKVFVDPGGSHCIATIVGSGGAETFYTHAKWSKPRV 104 (936)
Q Consensus 26 ~l~v~~n~l~l~~~~g~l~ridl-~~~~~~~~~l~~~~~~~~~i~~i~lDp~G~hlli~~~~~~~g~~~Y~~~~~~k~k~ 104 (936)
++.-.++.++.|..+|.|..+|+ .......+.. ...+.-.+..|.|..+++++. +|....++....+...
T Consensus 63 ~~s~~g~~l~~~~~d~~v~i~d~~~~~~~~~~~~------~~~~~~~~~~~~~~~l~~~~~---dg~i~iwd~~~~~~~~ 133 (420)
T 3vl1_A 63 TFEKVGSHLYKARLDGHDFLFNTIIRDGSKMLKR------ADYTAVDTAKLQMRRFILGTT---EGDIKVLDSNFNLQRE 133 (420)
T ss_dssp EEEEEETTEEEEEETTEEEEEECCSEETTTTSCS------CCEEEEEEECSSSCEEEEEET---TSCEEEECTTSCEEEE
T ss_pred eeeecCCeEEEEEcCCcEEEEEecccceeeEEec------CCceEEEEEecCCCEEEEEEC---CCCEEEEeCCCcceee
Confidence 45556678899999999999999 3332221111 134445577899999888887 8998888766554444
Q ss_pred ccCCCCceEEEEEecCCCCCCCCcceEEEEcCCCcEEEEEEecCCcccceeeEEeeeCCCCCceeeEEEEeeccCCCceE
Q 002318 105 LSKLKGLVVNAVAWNRQQITEASTKEIILGTDTGQLHEMAVDEKDKREKYIKLLFELNELPEAFMGLQMETASLSNGTRY 184 (936)
Q Consensus 105 L~klkg~~I~sVaw~~~~~~~~st~~iLiGt~~G~i~e~~i~~~~~~~~~~k~v~~l~~~~~~I~gi~~~~~~~~~~~~~ 184 (936)
..+-....|++++|++. ...++.|+.+|.|....+...+ ..+. +.-. .++|+++.|.. +.+.
T Consensus 134 ~~~~h~~~v~~~~~~~~------~~~l~s~s~d~~i~iwd~~~~~----~~~~-~~~h--~~~v~~~~~~~-----~~~~ 195 (420)
T 3vl1_A 134 IDQAHVSEITKLKFFPS------GEALISSSQDMQLKIWSVKDGS----NPRT-LIGH--RATVTDIAIID-----RGRN 195 (420)
T ss_dssp ETTSSSSCEEEEEECTT------SSEEEEEETTSEEEEEETTTCC----CCEE-EECC--SSCEEEEEEET-----TTTE
T ss_pred ecccccCccEEEEECCC------CCEEEEEeCCCeEEEEeCCCCc----CceE-EcCC--CCcEEEEEEcC-----CCCE
Confidence 33234468999999942 2378889999999888775431 1222 2222 36799999973 2357
Q ss_pred EEEEECCCeEEEEec
Q 002318 185 YVMAVTPTRLYSFTG 199 (936)
Q Consensus 185 ~i~ast~~rly~f~~ 199 (936)
++.++....+.-|.-
T Consensus 196 l~s~~~d~~v~iwd~ 210 (420)
T 3vl1_A 196 VLSASLDGTIRLWEC 210 (420)
T ss_dssp EEEEETTSCEEEEET
T ss_pred EEEEcCCCcEEEeEC
Confidence 777777777777753
No 92
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=96.86 E-value=0.039 Score=62.04 Aligned_cols=161 Identities=11% Similarity=0.016 Sum_probs=106.4
Q ss_pred CCCceeEEEEe----CCEEEEEecCCeEEEEeC-CCCCceeeEcCCCCCCccceeEEEeCCCCCeEEEEeecCCCccEEE
Q 002318 20 GRGVITCMSAG----NDVIVLGTSKGWLIRHDF-GAGDSYDIDLSAGRPGEQSIHKVFVDPGGSHCIATIVGSGGAETFY 94 (936)
Q Consensus 20 ~~~~i~~l~v~----~n~l~l~~~~g~l~ridl-~~~~~~~~~l~~~~~~~~~i~~i~lDp~G~hlli~~~~~~~g~~~Y 94 (936)
..+.++|++.. ++.++.|..+|.|..+|+ .+..+..+..+. ....|..+-++|.|.++++++. +|....
T Consensus 167 ~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~---h~~~v~~~~~s~~~~~l~s~~~---dg~i~i 240 (437)
T 3gre_A 167 KNEYAVRMRAFVNEEKSLLVALTNLSRVIIFDIRTLERLQIIENSP---RHGAVSSICIDEECCVLILGTT---RGIIDI 240 (437)
T ss_dssp SCCCEEEEEEEECSSCEEEEEEETTSEEEEEETTTCCEEEEEECCG---GGCCEEEEEECTTSCEEEEEET---TSCEEE
T ss_pred cccCceEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCeeeEEEccCC---CCCceEEEEECCCCCEEEEEcC---CCeEEE
Confidence 34567777744 779999999999999999 666566665531 1368999999999999999988 899888
Q ss_pred EecCCCCc-eeccCCCCceEEEEEecCCCCCCCCcceEEEEcCCCcEEEEEEecCCcccceeeEEee-------------
Q 002318 95 THAKWSKP-RVLSKLKGLVVNAVAWNRQQITEASTKEIILGTDTGQLHEMAVDEKDKREKYIKLLFE------------- 160 (936)
Q Consensus 95 ~~~~~~k~-k~L~klkg~~I~sVaw~~~~~~~~st~~iLiGt~~G~i~e~~i~~~~~~~~~~k~v~~------------- 160 (936)
++....+. +.+.--....|++++|.+... .+..-++.|+.+|.|....+.... ..+.+..
T Consensus 241 wd~~~~~~~~~~~~~~~~~v~~~~~~~~~s--~~~~~l~s~~~dg~i~iwd~~~~~----~~~~~~~~~~~~~~~~~~~~ 314 (437)
T 3gre_A 241 WDIRFNVLIRSWSFGDHAPITHVEVCQFYG--KNSVIVVGGSSKTFLTIWNFVKGH----CQYAFINSDEQPSMEHFLPI 314 (437)
T ss_dssp EETTTTEEEEEEBCTTCEEEEEEEECTTTC--TTEEEEEEESTTEEEEEEETTTTE----EEEEEESSSSCCCGGGGSCB
T ss_pred EEcCCccEEEEEecCCCCceEEEEeccccC--CCccEEEEEcCCCcEEEEEcCCCc----EEEEEEcCCCCCccceeccc
Confidence 87765432 222211235899999985322 134467778899988887765431 1111110
Q ss_pred --------eCC--CCCceeeEEEEeeccCCCceEEEEEECCCeEEEEe
Q 002318 161 --------LNE--LPEAFMGLQMETASLSNGTRYYVMAVTPTRLYSFT 198 (936)
Q Consensus 161 --------l~~--~~~~I~gi~~~~~~~~~~~~~~i~ast~~rly~f~ 198 (936)
+.+ ..++|+.+.|. + + ++++.++....++.|.
T Consensus 315 ~~~l~~~~~~~~~~~~~v~~l~~~--~--~--~~l~s~~~d~~i~~wd 356 (437)
T 3gre_A 315 EKGLEELNFCGIRSLNALSTISVS--N--D--KILLTDEATSSIVMFS 356 (437)
T ss_dssp CSSGGGCCCCCCCSGGGGCCEEEE--T--T--EEEEEEGGGTEEEEEE
T ss_pred ccccccceecccccCCceEEEEEC--C--c--eEEEecCCCCeEEEEE
Confidence 000 12457888886 1 2 5666666678888785
No 93
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=96.85 E-value=0.011 Score=65.70 Aligned_cols=161 Identities=8% Similarity=0.096 Sum_probs=103.2
Q ss_pred CCCceeEEEEe---CCEEEEEecCCeEEEEeC-CCCCc----eeeEcCCCCCCccceeEEEeCCCC-CeEEEEeecCCCc
Q 002318 20 GRGVITCMSAG---NDVIVLGTSKGWLIRHDF-GAGDS----YDIDLSAGRPGEQSIHKVFVDPGG-SHCIATIVGSGGA 90 (936)
Q Consensus 20 ~~~~i~~l~v~---~n~l~l~~~~g~l~ridl-~~~~~----~~~~l~~~~~~~~~i~~i~lDp~G-~hlli~~~~~~~g 90 (936)
..+.|++++.+ ++.++.|..+|.|..+|+ .+... ..+.+.........|..+-.+|.| ..+++++. +|
T Consensus 112 h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~---dg 188 (416)
T 2pm9_A 112 HSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMNKCTESPSNYTPLTPGQSMSSVDEVISLAWNQSLAHVFASAGS---SN 188 (416)
T ss_dssp SSSCCCEEEECSSSTTBEEEECSSSCEEBCBTTTTSSCTTTCCCBCCCCSCCSSCCCCEEEECSSCTTEEEEESS---SS
T ss_pred CccceEEEEEcCCCCCEEEEEcCCCeEEEEECCCCccccccccccccccccCCCCCeeEEEeCCCCCcEEEEEcC---CC
Confidence 34579999998 568999999999999999 44310 111111111124689999999995 55555555 78
Q ss_pred cEEEEecCCCCceeccCCC------CceEEEEEecCCCCCCCCcceEEEEcCCC---cEEEEEEecCCcccceeeEEeee
Q 002318 91 ETFYTHAKWSKPRVLSKLK------GLVVNAVAWNRQQITEASTKEIILGTDTG---QLHEMAVDEKDKREKYIKLLFEL 161 (936)
Q Consensus 91 ~~~Y~~~~~~k~k~L~klk------g~~I~sVaw~~~~~~~~st~~iLiGt~~G---~i~e~~i~~~~~~~~~~k~v~~l 161 (936)
....++....+.....+.. +..|.+++|++.. ..-++.|+.+| .|....+..... ..+ .+
T Consensus 189 ~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-----~~~l~~~~~d~~~~~i~~~d~~~~~~---~~~---~~ 257 (416)
T 2pm9_A 189 FASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHPKN-----STRVATATGSDNDPSILIWDLRNANT---PLQ---TL 257 (416)
T ss_dssp CEEEEETTTTEEEEEECCCCCSSCCCCCEEEEEECSSC-----TTEEEEEECCSSSCCCCEEETTSTTS---CSB---CC
T ss_pred CEEEEECCCCCcceEEeccccccccCCceEEEEECCCC-----CCEEEEEECCCCCceEEEEeCCCCCC---CcE---Ee
Confidence 8888877655432222222 5689999999531 23688888888 888877654311 111 22
Q ss_pred C-CCCCceeeEEEEeeccCCCceEEEEEECCCeEEEEe
Q 002318 162 N-ELPEAFMGLQMETASLSNGTRYYVMAVTPTRLYSFT 198 (936)
Q Consensus 162 ~-~~~~~I~gi~~~~~~~~~~~~~~i~ast~~rly~f~ 198 (936)
. .-..+|+++.|.. .+.++++.++....++-|.
T Consensus 258 ~~~~~~~v~~~~~s~----~~~~~l~s~~~dg~v~~wd 291 (416)
T 2pm9_A 258 NQGHQKGILSLDWCH----QDEHLLLSSGRDNTVLLWN 291 (416)
T ss_dssp CSCCSSCEEEEEECS----SCSSCEEEEESSSEEEEEC
T ss_pred ecCccCceeEEEeCC----CCCCeEEEEeCCCCEEEee
Confidence 2 2236799999963 1335777777778888775
No 94
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=96.85 E-value=0.038 Score=60.22 Aligned_cols=151 Identities=11% Similarity=0.117 Sum_probs=97.7
Q ss_pred CCceeEEEEeC------------CEEEEEecCCeEEEEeCCCCCceeeEcCCCCCCccceeEEEeCCCCCeEEEEeecCC
Q 002318 21 RGVITCMSAGN------------DVIVLGTSKGWLIRHDFGAGDSYDIDLSAGRPGEQSIHKVFVDPGGSHCIATIVGSG 88 (936)
Q Consensus 21 ~~~i~~l~v~~------------n~l~l~~~~g~l~ridl~~~~~~~~~l~~~~~~~~~i~~i~lDp~G~hlli~~~~~~ 88 (936)
.+.|+|++.+. +.++.|..+|+|..+|........+.-+ ...|..+-++|.|.+++.++.
T Consensus 162 ~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~h-----~~~v~~~~~s~~g~~l~sgs~--- 233 (343)
T 2xzm_R 162 SDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWNTNFQIRYTFKAH-----ESNVNHLSISPNGKYIATGGK--- 233 (343)
T ss_dssp SSCEEEEEECCCCCSCSCCCSSCCEEEEEETTSEEEEEETTTEEEEEEECC-----SSCEEEEEECTTSSEEEEEET---
T ss_pred CceeeeeeeccccccccccCCCCCEEEEEcCCCEEEEEcCCCceeEEEcCc-----cccceEEEECCCCCEEEEEcC---
Confidence 34688998876 4688899999999999733222233333 367999999999999998887
Q ss_pred CccEEEEecC-CCC-ceeccCCCCceEEEEEecCCCCCCCCcceEEEEcCCCcEEEEEEecCCcccceeeEEeeeC----
Q 002318 89 GAETFYTHAK-WSK-PRVLSKLKGLVVNAVAWNRQQITEASTKEIILGTDTGQLHEMAVDEKDKREKYIKLLFELN---- 162 (936)
Q Consensus 89 ~g~~~Y~~~~-~~k-~k~L~klkg~~I~sVaw~~~~~~~~st~~iLiGt~~G~i~e~~i~~~~~~~~~~k~v~~l~---- 162 (936)
+|....++.. ..+ .+.+. .+..|.+|+|++. +.+|.++.++.|....+..... .. +..+.
T Consensus 234 dg~v~iwd~~~~~~~~~~~~--~~~~v~~v~~sp~-------~~~la~~~d~~v~iw~~~~~~~-~~----~~~~~~~~~ 299 (343)
T 2xzm_R 234 DKKLLIWDILNLTYPQREFD--AGSTINQIAFNPK-------LQWVAVGTDQGVKIFNLMTQSK-AP----VCTIEAEPI 299 (343)
T ss_dssp TCEEEEEESSCCSSCSEEEE--CSSCEEEEEECSS-------SCEEEEEESSCEEEEESSSCCS-CS----EEECCCCSG
T ss_pred CCeEEEEECCCCcccceeec--CCCcEEEEEECCC-------CCEEEEECCCCEEEEEeCCCCC-Cc----eEEeecCcc
Confidence 8999888763 222 22222 3568999999942 2566666676677666543211 01 11111
Q ss_pred -------CCCCceeeEEEEeeccCCCceEEEEEECCCeEEEEe
Q 002318 163 -------ELPEAFMGLQMETASLSNGTRYYVMAVTPTRLYSFT 198 (936)
Q Consensus 163 -------~~~~~I~gi~~~~~~~~~~~~~~i~ast~~rly~f~ 198 (936)
+...+|+++.|.. ..+.++.++....+.-|.
T Consensus 300 ~~~~~~~~~~~~v~~~~~sp-----~g~~l~sg~~Dg~v~~w~ 337 (343)
T 2xzm_R 300 TKAEGQKGKNPQCTSLAWNA-----LGKKLFAGFTDGVIRTFS 337 (343)
T ss_dssp GGBTTBCCSCCCEEEEEECS-----SSCCEEEEETTSEEEEEE
T ss_pred hhhhhhcCCCCceEEEEECC-----CCCeEEEecCCceEEEEE
Confidence 1124688888863 235677777777666563
No 95
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=96.85 E-value=0.076 Score=57.47 Aligned_cols=162 Identities=9% Similarity=0.027 Sum_probs=102.9
Q ss_pred CceeEEEEeC--CEEEEEecCCeEEEEeC-CCCCc-eeeEcCCCCCCccceeEEEeCCCCCeEEEEeecCCCccEEEEec
Q 002318 22 GVITCMSAGN--DVIVLGTSKGWLIRHDF-GAGDS-YDIDLSAGRPGEQSIHKVFVDPGGSHCIATIVGSGGAETFYTHA 97 (936)
Q Consensus 22 ~~i~~l~v~~--n~l~l~~~~g~l~ridl-~~~~~-~~~~l~~~~~~~~~i~~i~lDp~G~hlli~~~~~~~g~~~Y~~~ 97 (936)
+.|++++.++ +.|+-|..+|+|..+|+ ..... ..+..-.. -...|..+-.+|.|.+++.++. +|....+..
T Consensus 108 ~~V~~v~~sp~g~~las~s~D~~v~iwd~~~~~~~~~~~~~~~~--h~~~v~~v~~~p~~~~l~s~s~---D~~i~iW~~ 182 (330)
T 2hes_X 108 NEVKGVAWSNDGYYLATCSRDKSVWIWETDESGEEYECISVLQE--HSQDVKHVIWHPSEALLASSSY---DDTVRIWKD 182 (330)
T ss_dssp -CEEEEEECTTSCEEEEEETTSCEEEEECCTTCCCCEEEEEECC--CSSCEEEEEECSSSSEEEEEET---TSCEEEEEE
T ss_pred CcEEEEEECCCCCEEEEEeCCCEEEEEeccCCCCCeEEEEEecc--CCCceEEEEECCCCCEEEEEcC---CCeEEEEEC
Confidence 5689999974 58888889999999999 43322 11211111 1367999999999999888887 888877765
Q ss_pred CCCCceeccCCCC--ceEEEEEecCCCCCCCCcceEEEEcCCCcEEEEEEecCCc-ccceeeEEeeeCC-CCCceeeEEE
Q 002318 98 KWSKPRVLSKLKG--LVVNAVAWNRQQITEASTKEIILGTDTGQLHEMAVDEKDK-REKYIKLLFELNE-LPEAFMGLQM 173 (936)
Q Consensus 98 ~~~k~k~L~klkg--~~I~sVaw~~~~~~~~st~~iLiGt~~G~i~e~~i~~~~~-~~~~~k~v~~l~~-~~~~I~gi~~ 173 (936)
.....+.+..++| ..|.+++|++.. ....++.|+.+|.|....+..... ....+..+..+++ -..+|..+.|
T Consensus 183 ~~~~~~~~~~~~~h~~~v~~~~~~~~~----~~~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~ 258 (330)
T 2hes_X 183 YDDDWECVAVLNGHEGTVWSSDFDKTE----GVFRLCSGSDDSTVRVWKYMGDDEDDQQEWVCEAILPDVHKRQVYNVAW 258 (330)
T ss_dssp ETTEEEEEEEECCCSSCEEEEEECCSS----SSCEEEEEETTSCEEEEEEEEECTTSCEEEEEEEECCSCCSSCEEEEEE
T ss_pred CCCCeeEEEEccCCCCcEEEEEecCCC----CeeEEEEEeCCCeEEEEEecCCCccccceeEEeeecccccccceEEEEE
Confidence 4332233444444 379999999532 123577899999988777654311 1111233333432 2367999998
Q ss_pred EeeccCCCceEEEEEECCCeEEEEe
Q 002318 174 ETASLSNGTRYYVMAVTPTRLYSFT 198 (936)
Q Consensus 174 ~~~~~~~~~~~~i~ast~~rly~f~ 198 (936)
. + + +.++.++....+.-|.
T Consensus 259 s--~--~--~~l~s~~~dg~v~iw~ 277 (330)
T 2hes_X 259 G--F--N--GLIASVGADGVLAVYE 277 (330)
T ss_dssp C--T--T--SCEEEEETTSCEEEEE
T ss_pred c--C--C--CEEEEEeCCCEEEEEE
Confidence 6 1 2 3566666666666664
No 96
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=96.85 E-value=0.011 Score=66.99 Aligned_cols=157 Identities=9% Similarity=-0.034 Sum_probs=102.1
Q ss_pred CCceeEEEEe---CCEEEEEecCCeEEEEeCCCCCceeeEcCCCCCCccceeEEEeCCCCCeEEEEeecCCCccEEEEec
Q 002318 21 RGVITCMSAG---NDVIVLGTSKGWLIRHDFGAGDSYDIDLSAGRPGEQSIHKVFVDPGGSHCIATIVGSGGAETFYTHA 97 (936)
Q Consensus 21 ~~~i~~l~v~---~n~l~l~~~~g~l~ridl~~~~~~~~~l~~~~~~~~~i~~i~lDp~G~hlli~~~~~~~g~~~Y~~~ 97 (936)
.+.|+|++.+ ++.|+-|-.+|+|..||+.......+.-.. .....+..+-++|.|.++++.+. +|..+.++.
T Consensus 164 ~~~V~~l~f~p~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~l~~g~~---dg~i~~wd~ 238 (435)
T 4e54_B 164 GGSITGLKFNPLNTNQFYASSMEGTTRLQDFKGNILRVFASSD--TINIWFCSLDVSASSRMVVTGDN---VGNVILLNM 238 (435)
T ss_dssp SCCCCEEEECSSCTTEEEEECSSSCEEEEETTSCEEEEEECCS--SCSCCCCCEEEETTTTEEEEECS---SSBEEEEES
T ss_pred CCCEEEEEEeCCCCCEEEEEeCCCEEEEeeccCCceeEEeccC--CCCccEEEEEECCCCCEEEEEeC---CCcEeeecc
Confidence 3579999986 468888999999999999443333222221 11345677888999999888887 899988887
Q ss_pred CCCCceeccCCCC--ceEEEEEecCCCCCCCCcceEEEEcCCCcEEEEEEecCCcccceeeEEeeeCCCCCceeeEEEEe
Q 002318 98 KWSKPRVLSKLKG--LVVNAVAWNRQQITEASTKEIILGTDTGQLHEMAVDEKDKREKYIKLLFELNELPEAFMGLQMET 175 (936)
Q Consensus 98 ~~~k~k~L~klkg--~~I~sVaw~~~~~~~~st~~iLiGt~~G~i~e~~i~~~~~~~~~~k~v~~l~~~~~~I~gi~~~~ 175 (936)
.... +..+++ ..|.+|+|++.. ..-++.|+.+|.|....+..... ...+.....-..+|+++.|..
T Consensus 239 ~~~~---~~~~~~h~~~v~~v~~~p~~-----~~~~~s~s~d~~v~iwd~~~~~~----~~~~~~~~~h~~~v~~~~~sp 306 (435)
T 4e54_B 239 DGKE---LWNLRMHKKKVTHVALNPCC-----DWFLATASVDQTVKIWDLRQVRG----KASFLYSLPHRHPVNAACFSP 306 (435)
T ss_dssp SSCB---CCCSBCCSSCEEEEEECTTC-----SSEEEEEETTSBCCEEETTTCCS----SSCCSBCCBCSSCEEECCBCT
T ss_pred Ccce---eEEEecccceEEeeeecCCC-----ceEEEEecCcceeeEEecccccc----cceEEEeeeccccccceeECC
Confidence 5543 333444 479999998431 22466788999887766543211 111111111135799988862
Q ss_pred eccCCCceEEEEEECCCeEEEEec
Q 002318 176 ASLSNGTRYYVMAVTPTRLYSFTG 199 (936)
Q Consensus 176 ~~~~~~~~~~i~ast~~rly~f~~ 199 (936)
+.++++.++....++-|.-
T Consensus 307 -----dg~~l~s~~~D~~i~iwd~ 325 (435)
T 4e54_B 307 -----DGARLLTTDQKSEIRVYSA 325 (435)
T ss_dssp -----TSSEEEEEESSSCEEEEES
T ss_pred -----CCCeeEEEcCCCEEEEEEC
Confidence 2357777777777777753
No 97
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=96.83 E-value=0.024 Score=64.46 Aligned_cols=155 Identities=7% Similarity=-0.009 Sum_probs=103.1
Q ss_pred ceeEEEEeCC--EE-EEEecCCeEEEEeCC--CCC-ceeeEcCCCCCCccceeEEEeCCCCCeEEEEeecCCCccEEEEe
Q 002318 23 VITCMSAGND--VI-VLGTSKGWLIRHDFG--AGD-SYDIDLSAGRPGEQSIHKVFVDPGGSHCIATIVGSGGAETFYTH 96 (936)
Q Consensus 23 ~i~~l~v~~n--~l-~l~~~~g~l~ridl~--~~~-~~~~~l~~~~~~~~~i~~i~lDp~G~hlli~~~~~~~g~~~Y~~ 96 (936)
.|+|++++.+ .| +.|..+|.|..||+. ... ...+.-+. ....|..+-++|.|.++++++. +|..+.+.
T Consensus 104 ~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~---~~~~v~~~~~sp~~~~l~~~~~---~g~v~~~~ 177 (450)
T 2vdu_B 104 YIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLRKRFC---FSKRPNAISIAEDDTTVIIADK---FGDVYSID 177 (450)
T ss_dssp CEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEEEEE---CSSCEEEEEECTTSSEEEEEET---TSEEEEEE
T ss_pred ceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCceeeeeeccc---CCCCceEEEEcCCCCEEEEEeC---CCcEEEEe
Confidence 6999999865 54 777789999999994 222 23332110 1357899999999999999887 89998887
Q ss_pred cCCCCce--eccCCC--CceEEEEEecCCCCCCCCcceEEEEcCCCcEEEEEEecCCcccceeeEEeeeCCCCCceeeEE
Q 002318 97 AKWSKPR--VLSKLK--GLVVNAVAWNRQQITEASTKEIILGTDTGQLHEMAVDEKDKREKYIKLLFELNELPEAFMGLQ 172 (936)
Q Consensus 97 ~~~~k~k--~L~klk--g~~I~sVaw~~~~~~~~st~~iLiGt~~G~i~e~~i~~~~~~~~~~k~v~~l~~~~~~I~gi~ 172 (936)
....+.. .+..+. ...|.+|+|++.. ....-++.|+.+|.|....+..+. ..... +.+-.++|+++.
T Consensus 178 ~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~---~~~~~l~s~~~d~~i~vwd~~~~~----~~~~~--~~~h~~~v~~~~ 248 (450)
T 2vdu_B 178 INSIPEEKFTQEPILGHVSMLTDVHLIKDS---DGHQFIITSDRDEHIKISHYPQCF----IVDKW--LFGHKHFVSSIC 248 (450)
T ss_dssp TTSCCCSSCCCCCSEECSSCEEEEEEEECT---TSCEEEEEEETTSCEEEEEESCTT----CEEEE--CCCCSSCEEEEE
T ss_pred cCCcccccccceeeecccCceEEEEEcCCC---CCCcEEEEEcCCCcEEEEECCCCc----eeeee--ecCCCCceEEEE
Confidence 5443322 111223 3479999999531 013478888999999988875431 12221 222236799998
Q ss_pred EEeeccCCCceEEEEEECCCeEEEEe
Q 002318 173 METASLSNGTRYYVMAVTPTRLYSFT 198 (936)
Q Consensus 173 ~~~~~~~~~~~~~i~ast~~rly~f~ 198 (936)
|. . .++++.++....++-|.
T Consensus 249 ~s--d----~~~l~s~~~d~~v~vwd 268 (450)
T 2vdu_B 249 CG--K----DYLLLSAGGDDKIFAWD 268 (450)
T ss_dssp EC--S----TTEEEEEESSSEEEEEE
T ss_pred EC--C----CCEEEEEeCCCeEEEEE
Confidence 86 1 25777777788888775
No 98
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=96.81 E-value=0.038 Score=66.73 Aligned_cols=155 Identities=8% Similarity=-0.022 Sum_probs=106.6
Q ss_pred CCceeEEEEeC--CEEEEEecCCeEEEEeC-CCCCceeeEcCCCCCCccceeEEEeCCCCCeEEEEeecCCCccEEEEec
Q 002318 21 RGVITCMSAGN--DVIVLGTSKGWLIRHDF-GAGDSYDIDLSAGRPGEQSIHKVFVDPGGSHCIATIVGSGGAETFYTHA 97 (936)
Q Consensus 21 ~~~i~~l~v~~--n~l~l~~~~g~l~ridl-~~~~~~~~~l~~~~~~~~~i~~i~lDp~G~hlli~~~~~~~g~~~Y~~~ 97 (936)
.+.|+|++++. +.++-|..+|+|..||+ .+..+..+.-| ...|..+-.+|.|.+++.++. +|....++.
T Consensus 430 ~~~v~~v~~s~~g~~l~sgs~Dg~v~vwd~~~~~~~~~~~~h-----~~~v~~~~~s~~~~~l~s~s~---D~~i~iwd~ 501 (694)
T 3dm0_A 430 SHFVEDVVLSSDGQFALSGSWDGELRLWDLAAGVSTRRFVGH-----TKDVLSVAFSLDNRQIVSASR---DRTIKLWNT 501 (694)
T ss_dssp SSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECC-----SSCEEEEEECTTSSCEEEEET---TSCEEEECT
T ss_pred CCcEEEEEECCCCCEEEEEeCCCcEEEEECCCCcceeEEeCC-----CCCEEEEEEeCCCCEEEEEeC---CCEEEEEEC
Confidence 35689999875 58888999999999999 55544455444 467999999999999999888 898887775
Q ss_pred CCCCceec-cCCCC--ceEEEEEecCCCCCCCCcceEEEEcCCCcEEEEEEecCCcccceeeEEeeeCCCCCceeeEEEE
Q 002318 98 KWSKPRVL-SKLKG--LVVNAVAWNRQQITEASTKEIILGTDTGQLHEMAVDEKDKREKYIKLLFELNELPEAFMGLQME 174 (936)
Q Consensus 98 ~~~k~k~L-~klkg--~~I~sVaw~~~~~~~~st~~iLiGt~~G~i~e~~i~~~~~~~~~~k~v~~l~~~~~~I~gi~~~ 174 (936)
.......+ ....+ ..|.+++|++.. ....++.|+.+|.|....+... +.+..+..-.++|+++.|.
T Consensus 502 ~~~~~~~~~~~~~~h~~~v~~~~~~~~~----~~~~l~s~s~d~~v~vwd~~~~-------~~~~~~~~h~~~v~~v~~s 570 (694)
T 3dm0_A 502 LGECKYTISEGGEGHRDWVSCVRFSPNT----LQPTIVSASWDKTVKVWNLSNC-------KLRSTLAGHTGYVSTVAVS 570 (694)
T ss_dssp TSCEEEEECSSTTSCSSCEEEEEECSCS----SSCEEEEEETTSCEEEEETTTC-------CEEEEECCCSSCEEEEEEC
T ss_pred CCCcceeeccCCCCCCCcEEEEEEeCCC----CcceEEEEeCCCeEEEEECCCC-------cEEEEEcCCCCCEEEEEEe
Confidence 43322222 22223 369999999432 1236888999999888766432 1222333323679999987
Q ss_pred eeccCCCceEEEEEECCCeEEEEec
Q 002318 175 TASLSNGTRYYVMAVTPTRLYSFTG 199 (936)
Q Consensus 175 ~~~~~~~~~~~i~ast~~rly~f~~ 199 (936)
. +.++++.++....+.-|.-
T Consensus 571 p-----dg~~l~sg~~Dg~i~iwd~ 590 (694)
T 3dm0_A 571 P-----DGSLCASGGKDGVVLLWDL 590 (694)
T ss_dssp T-----TSSEEEEEETTSBCEEEET
T ss_pred C-----CCCEEEEEeCCCeEEEEEC
Confidence 3 3367777777777776753
No 99
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=96.76 E-value=0.018 Score=64.90 Aligned_cols=160 Identities=6% Similarity=0.065 Sum_probs=103.8
Q ss_pred CCceeEEEEeC---CEEEEEecCCeEEEEeC-C---CCCce-eeEcCCCCCCccceeEEEeCCCCCeEEEEeecCCCccE
Q 002318 21 RGVITCMSAGN---DVIVLGTSKGWLIRHDF-G---AGDSY-DIDLSAGRPGEQSIHKVFVDPGGSHCIATIVGSGGAET 92 (936)
Q Consensus 21 ~~~i~~l~v~~---n~l~l~~~~g~l~ridl-~---~~~~~-~~~l~~~~~~~~~i~~i~lDp~G~hlli~~~~~~~g~~ 92 (936)
.+.|+|+++++ +.|+.|..+|+|..||+ . ..... ..... -...|..+-..|.|..+++++. +|..
T Consensus 63 ~~~V~~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~----h~~~v~~~~~~~~~~~l~s~s~---dg~i 135 (437)
T 3gre_A 63 PNSITSSAVSPGETPYLITGSDQGVIKIWNLKEIIVGEVYSSSLTYD----CSSTVTQITMIPNFDAFAVSSK---DGQI 135 (437)
T ss_dssp TSCEEEEEEECSSSCEEEEEETTSEEEEEEHHHHHTTCCCSCSEEEE----CSSCEEEEEECTTSSEEEEEET---TSEE
T ss_pred CCceEEEEECCCCCCEEEEecCCceEEEeECcccccCcccceeeecc----CCCCEEEEEEeCCCCEEEEEeC---CCEE
Confidence 46799999988 58999999999999999 4 22111 11211 1468999999999999999888 8988
Q ss_pred EEEecC---CCCceeccCCCCceEEEEEecCC--CC--------CCCCcceEEEEcCCCcEEEEEEecCCcccceeeEEe
Q 002318 93 FYTHAK---WSKPRVLSKLKGLVVNAVAWNRQ--QI--------TEASTKEIILGTDTGQLHEMAVDEKDKREKYIKLLF 159 (936)
Q Consensus 93 ~Y~~~~---~~k~k~L~klkg~~I~sVaw~~~--~~--------~~~st~~iLiGt~~G~i~e~~i~~~~~~~~~~k~v~ 159 (936)
..+... ..+ .+..+++..|.++.|++. .. ...+...++.|+.+|.|....+... +.... +
T Consensus 136 ~vwd~~~~~~~~--~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~----~~~~~-~ 208 (437)
T 3gre_A 136 IVLKVNHYQQES--EVKFLNCECIRKINLKNFGKNEYAVRMRAFVNEEKSLLVALTNLSRVIIFDIRTL----ERLQI-I 208 (437)
T ss_dssp EEEEEEEEEETT--EEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECSSCEEEEEEETTSEEEEEETTTC----CEEEE-E
T ss_pred EEEEeccccCCc--eeeccccceeEEEEccCcccccCceEEEEEEcCCCCEEEEEeCCCeEEEEeCCCC----eeeEE-E
Confidence 777652 222 222234557777776631 00 0113457888999999988776543 11222 2
Q ss_pred eeCCCCCceeeEEEEeeccCCCceEEEEEECCCeEEEEec
Q 002318 160 ELNELPEAFMGLQMETASLSNGTRYYVMAVTPTRLYSFTG 199 (936)
Q Consensus 160 ~l~~~~~~I~gi~~~~~~~~~~~~~~i~ast~~rly~f~~ 199 (936)
..+...++|+++.|.. +.++++.++....+.-|.-
T Consensus 209 ~~~~h~~~v~~~~~s~-----~~~~l~s~~~dg~i~iwd~ 243 (437)
T 3gre_A 209 ENSPRHGAVSSICIDE-----ECCVLILGTTRGIIDIWDI 243 (437)
T ss_dssp ECCGGGCCEEEEEECT-----TSCEEEEEETTSCEEEEET
T ss_pred ccCCCCCceEEEEECC-----CCCEEEEEcCCCeEEEEEc
Confidence 2210125799999862 3467777777777887753
No 100
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=96.69 E-value=0.054 Score=58.52 Aligned_cols=147 Identities=12% Similarity=0.096 Sum_probs=91.8
Q ss_pred CCceeEEEEeCCEEEEEecCCeEEEEeC-CCCCc-eeeEcCCCCCCccceeEEEeCCCCCe--EEEEeecCCCccEEEEe
Q 002318 21 RGVITCMSAGNDVIVLGTSKGWLIRHDF-GAGDS-YDIDLSAGRPGEQSIHKVFVDPGGSH--CIATIVGSGGAETFYTH 96 (936)
Q Consensus 21 ~~~i~~l~v~~n~l~l~~~~g~l~ridl-~~~~~-~~~~l~~~~~~~~~i~~i~lDp~G~h--lli~~~~~~~g~~~Y~~ 96 (936)
+..+.++...++.++++..+|.+..+|+ ..... ..+..+ ......+..++.++.... +++++. +|....+.
T Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~---dg~i~i~~ 244 (368)
T 3mmy_A 170 PERCYCADVIYPMAVVATAERGLIVYQLENQPSEFRRIESP--LKHQHRCVAIFKDKQNKPTGFALGSI---EGRVAIHY 244 (368)
T ss_dssp SSCEEEEEEETTEEEEEEGGGCEEEEECSSSCEEEEECCCS--CSSCEEEEEEEECTTSCEEEEEEEET---TSEEEEEE
T ss_pred CCCceEEEecCCeeEEEeCCCcEEEEEeccccchhhhcccc--ccCCCceEEEcccCCCCCCeEEEecC---CCcEEEEe
Confidence 3468889999999999999999999999 33222 222222 111234444454444322 666666 78877666
Q ss_pred cCCCCc-eeccCCCCc--------------eEEEEEecCCCCCCCCcceEEEEcCCCcEEEEEEecCCcccceeeEEeee
Q 002318 97 AKWSKP-RVLSKLKGL--------------VVNAVAWNRQQITEASTKEIILGTDTGQLHEMAVDEKDKREKYIKLLFEL 161 (936)
Q Consensus 97 ~~~~k~-k~L~klkg~--------------~I~sVaw~~~~~~~~st~~iLiGt~~G~i~e~~i~~~~~~~~~~k~v~~l 161 (936)
...... +.+..++++ .|++++|++. ..-++.|+.+|.|....+... +.+..+
T Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~------~~~l~s~~~dg~i~iwd~~~~-------~~~~~~ 311 (368)
T 3mmy_A 245 INPPNPAKDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHPV------HGTLATVGSDGRFSFWDKDAR-------TKLKTS 311 (368)
T ss_dssp SSCSCHHHHSEEEECSEEC----CCCEEECCEEEEEECTT------TCCEEEEETTSCEEEEETTTT-------EEEEEC
T ss_pred cCCCCccccceeeeeeecccccccccccccceEEEEEecC------CCEEEEEccCCeEEEEECCCC-------cEEEEe
Confidence 554432 333334444 4999999952 247889999999988876543 223344
Q ss_pred CCCCCceeeEEEEeeccCCCceEEEEEEC
Q 002318 162 NELPEAFMGLQMETASLSNGTRYYVMAVT 190 (936)
Q Consensus 162 ~~~~~~I~gi~~~~~~~~~~~~~~i~ast 190 (936)
..-.++|+++.|.. +.++++.++.
T Consensus 312 ~~~~~~v~~~~~s~-----~g~~l~~~s~ 335 (368)
T 3mmy_A 312 EQLDQPISACCFNH-----NGNIFAYASS 335 (368)
T ss_dssp CCCSSCEEEEEECT-----TSSCEEEEEC
T ss_pred cCCCCCceEEEECC-----CCCeEEEEec
Confidence 43346799999962 3356666655
No 101
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=96.69 E-value=0.031 Score=69.96 Aligned_cols=154 Identities=9% Similarity=0.049 Sum_probs=106.0
Q ss_pred CCceeEEEEeCC-EEEEEecCCeEEEEeC-CCCCceeeEcCCCCCCccceeEEEeCCCCCeEEEEeecCCCccEEEEecC
Q 002318 21 RGVITCMSAGND-VIVLGTSKGWLIRHDF-GAGDSYDIDLSAGRPGEQSIHKVFVDPGGSHCIATIVGSGGAETFYTHAK 98 (936)
Q Consensus 21 ~~~i~~l~v~~n-~l~l~~~~g~l~ridl-~~~~~~~~~l~~~~~~~~~i~~i~lDp~G~hlli~~~~~~~g~~~Y~~~~ 98 (936)
.+.|++++.+.+ .|+-|..+|+|..||+ .+..+..+.. ...|..+-++|.|.++++.+. +|....++..
T Consensus 58 ~~~V~~l~fspg~~L~S~s~D~~v~lWd~~~~~~~~~~~~------~~~V~~v~~sp~g~~l~sgs~---dg~V~lwd~~ 128 (902)
T 2oaj_A 58 RSAIKEMRFVKGIYLVVINAKDTVYVLSLYSQKVLTTVFV------PGKITSIDTDASLDWMLIGLQ---NGSMIVYDID 128 (902)
T ss_dssp CCCEEEEEEETTTEEEEEETTCEEEEEETTTCSEEEEEEC------SSCEEEEECCTTCSEEEEEET---TSCEEEEETT
T ss_pred CCCEEEEEEcCCCEEEEEECcCeEEEEECCCCcEEEEEcC------CCCEEEEEECCCCCEEEEEcC---CCcEEEEECC
Confidence 457999998855 5888889999999999 6555555542 257999999999999999988 8999888776
Q ss_pred CCCcee--c-------cCCCC--ceEEEEEecCCCCCCCCcceEEEEcCCCcEEEEEEecCCcccceeeEEeeeC---C-
Q 002318 99 WSKPRV--L-------SKLKG--LVVNAVAWNRQQITEASTKEIILGTDTGQLHEMAVDEKDKREKYIKLLFELN---E- 163 (936)
Q Consensus 99 ~~k~k~--L-------~klkg--~~I~sVaw~~~~~~~~st~~iLiGt~~G~i~e~~i~~~~~~~~~~k~v~~l~---~- 163 (936)
..+... + ..+++ ..|++|+|++. +.+.+++|+.+|.| ...+... +..+. +... +
T Consensus 129 ~~~~~~~~i~~~~~~~~~~~~h~~~V~sl~~sp~-----~~~~l~~g~~dg~v-lWd~~~~----~~~~~-~~~~~~~g~ 197 (902)
T 2oaj_A 129 RDQLSSFKLDNLQKSSFFPAARLSPIVSIQWNPR-----DIGTVLISYEYVTL-TYSLVEN----EIKQS-FIYELPPFA 197 (902)
T ss_dssp TTEEEEEEECCHHHHHTCSSSCCCCCCEEEEETT-----EEEEEEEECSSCEE-EEETTTT----EEEEE-ECCCBCTTC
T ss_pred CCccccceeccccccccccccCCCCeEEEEEccC-----CCCEEEEEeCCCcE-EEECCCC----ceEEE-EecccCCcC
Confidence 544211 1 12233 47999999953 23579999999988 5555432 11222 2211 0
Q ss_pred ------------CCCceeeEEEEeeccCCCceEEEEEECCCeEEEEec
Q 002318 164 ------------LPEAFMGLQMETASLSNGTRYYVMAVTPTRLYSFTG 199 (936)
Q Consensus 164 ------------~~~~I~gi~~~~~~~~~~~~~~i~ast~~rly~f~~ 199 (936)
...+|+++.|.. +.++++.++....+.-|..
T Consensus 198 ~~~~~~~~~~~~h~~~V~~v~fsp-----dg~~lasgs~Dg~i~lWd~ 240 (902)
T 2oaj_A 198 PGGDFSEKTNEKRTPKVIQSLYHP-----NSLHIITIHEDNSLVFWDA 240 (902)
T ss_dssp CCSTTCCCTTSCBCCCEEEEEECT-----TSSEEEEEETTCCEEEEET
T ss_pred CCcccccccccccCCCeEEEEEcC-----CCCEEEEEECCCeEEEEEC
Confidence 014699999973 2367887787888888864
No 102
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=96.68 E-value=0.064 Score=60.83 Aligned_cols=113 Identities=7% Similarity=-0.028 Sum_probs=80.8
Q ss_pred CCceeEEEEeC--CEEEEEecCCeEEEEeC-CCCCce----eeEcCCCCCCccceeEEEeCCC---CCeEEEEeecCCCc
Q 002318 21 RGVITCMSAGN--DVIVLGTSKGWLIRHDF-GAGDSY----DIDLSAGRPGEQSIHKVFVDPG---GSHCIATIVGSGGA 90 (936)
Q Consensus 21 ~~~i~~l~v~~--n~l~l~~~~g~l~ridl-~~~~~~----~~~l~~~~~~~~~i~~i~lDp~---G~hlli~~~~~~~g 90 (936)
+..|++++.+. +.|+.|..+|.++.+|+ .+.... .+.-+ ...|..+-.+|. |.+++.++. +|
T Consensus 149 ~~~v~~~~~sp~~~~l~~~~~~g~v~~~~~~~~~~~~~~~~~~~~h-----~~~v~~~~~sp~~~~~~~l~s~~~---d~ 220 (450)
T 2vdu_B 149 SKRPNAISIAEDDTTVIIADKFGDVYSIDINSIPEEKFTQEPILGH-----VSMLTDVHLIKDSDGHQFIITSDR---DE 220 (450)
T ss_dssp SSCEEEEEECTTSSEEEEEETTSEEEEEETTSCCCSSCCCCCSEEC-----SSCEEEEEEEECTTSCEEEEEEET---TS
T ss_pred CCCceEEEEcCCCCEEEEEeCCCcEEEEecCCcccccccceeeecc-----cCceEEEEEcCCCCCCcEEEEEcC---CC
Confidence 35689999975 58999999999999999 544332 22222 367999999999 888888877 88
Q ss_pred cEEEEecCCCCc-eeccCCCCceEEEEEecCCCCCCCCcceEEEEcCCCcEEEEEEecC
Q 002318 91 ETFYTHAKWSKP-RVLSKLKGLVVNAVAWNRQQITEASTKEIILGTDTGQLHEMAVDEK 148 (936)
Q Consensus 91 ~~~Y~~~~~~k~-k~L~klkg~~I~sVaw~~~~~~~~st~~iLiGt~~G~i~e~~i~~~ 148 (936)
..+.++....+. +.+..-....|.+++|+ . ..-++.|+.+|.|....+..+
T Consensus 221 ~i~vwd~~~~~~~~~~~~~h~~~v~~~~~s-d------~~~l~s~~~d~~v~vwd~~~~ 272 (450)
T 2vdu_B 221 HIKISHYPQCFIVDKWLFGHKHFVSSICCG-K------DYLLLSAGGDDKIFAWDWKTG 272 (450)
T ss_dssp CEEEEEESCTTCEEEECCCCSSCEEEEEEC-S------TTEEEEEESSSEEEEEETTTC
T ss_pred cEEEEECCCCceeeeeecCCCCceEEEEEC-C------CCEEEEEeCCCeEEEEECCCC
Confidence 888777655442 22121133589999997 2 237888999999988776543
No 103
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=96.68 E-value=0.063 Score=57.83 Aligned_cols=160 Identities=9% Similarity=0.146 Sum_probs=103.5
Q ss_pred CCceeEEEEeC---CEEEEEecCCeEEEEeC-CCCCceeeEcCCCCCCccceeEEEeCCCCCeEEEEeecCCCccEEEEe
Q 002318 21 RGVITCMSAGN---DVIVLGTSKGWLIRHDF-GAGDSYDIDLSAGRPGEQSIHKVFVDPGGSHCIATIVGSGGAETFYTH 96 (936)
Q Consensus 21 ~~~i~~l~v~~---n~l~l~~~~g~l~ridl-~~~~~~~~~l~~~~~~~~~i~~i~lDp~G~hlli~~~~~~~g~~~Y~~ 96 (936)
.+.|++++++. ++|+-|-.+|+|..||+ ..+.....++..-..-...|..+.+.|.|.+++.++. +|....++
T Consensus 17 ~~~V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~---D~~v~~wd 93 (319)
T 3frx_A 17 NGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASW---DKTLRLWD 93 (319)
T ss_dssp SSCEEEEEECSSCTTEEEEEETTSEEEEEEEEEETTEEEEEEEEEECCSSCEEEEEECTTSSEEEEEET---TSEEEEEE
T ss_pred cceEEEEEccCCCccEEEEecCCccEEEecCCCCCccccccceEEeCCcccEEEEEECCCCCEEEEEeC---CCEEEEEE
Confidence 35699999974 68999999999999999 3332211111100111468999999999999999888 89998888
Q ss_pred cCCCCceeccCCCC--ceEEEEEecCCCCCCCCcceEEEEcCCCcEEEEEEecCCcccceeeEEeeeCCCCCceeeEEEE
Q 002318 97 AKWSKPRVLSKLKG--LVVNAVAWNRQQITEASTKEIILGTDTGQLHEMAVDEKDKREKYIKLLFELNELPEAFMGLQME 174 (936)
Q Consensus 97 ~~~~k~k~L~klkg--~~I~sVaw~~~~~~~~st~~iLiGt~~G~i~e~~i~~~~~~~~~~k~v~~l~~~~~~I~gi~~~ 174 (936)
....+ .+..+.| ..|.+|+|++. ...++.|+.+|.|....+... .+. .+.+-..+|..+.+.
T Consensus 94 ~~~~~--~~~~~~~h~~~v~~~~~~~~------~~~l~s~s~D~~i~vwd~~~~-----~~~---~~~~h~~~v~~~~~~ 157 (319)
T 3frx_A 94 VATGE--TYQRFVGHKSDVMSVDIDKK------ASMIISGSRDKTIKVWTIKGQ-----CLA---TLLGHNDWVSQVRVV 157 (319)
T ss_dssp TTTTE--EEEEEECCSSCEEEEEECTT------SCEEEEEETTSCEEEEETTSC-----EEE---EECCCSSCEEEEEEC
T ss_pred CCCCC--eeEEEccCCCcEEEEEEcCC------CCEEEEEeCCCeEEEEECCCC-----eEE---EEeccCCcEEEEEEc
Confidence 75543 2333333 47999999842 237888999998887765431 122 233223568888886
Q ss_pred eeccC-CCceEEEEEECCCeEEEEec
Q 002318 175 TASLS-NGTRYYVMAVTPTRLYSFTG 199 (936)
Q Consensus 175 ~~~~~-~~~~~~i~ast~~rly~f~~ 199 (936)
..... .+...++-++....+..|.-
T Consensus 158 ~~~~~~~~~~~l~s~~~d~~i~~wd~ 183 (319)
T 3frx_A 158 PNEKADDDSVTIISAGNDKMVKAWNL 183 (319)
T ss_dssp CC------CCEEEEEETTSCEEEEET
T ss_pred cCCCCCCCccEEEEEeCCCEEEEEEC
Confidence 32110 12235666666777777753
No 104
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=96.63 E-value=0.12 Score=55.45 Aligned_cols=49 Identities=18% Similarity=0.106 Sum_probs=39.6
Q ss_pred HHHchhhHHHHHHhcCCh----hhHHHHHHHHHHHHHhcCCHHHHHHHHHHhc
Q 002318 370 VYLDMKEYAAALANCRDP----LQRDQVYLVQAEAAFATKDFHRAASFYAKIN 418 (936)
Q Consensus 370 ~ll~~~~f~~Al~~~~~~----~~~~~I~~~~~~~L~~~g~y~~Aa~~y~~~~ 418 (936)
.++..|+|++|+.+.+.. .....+....|..++..|+|++|...|.+..
T Consensus 12 ~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~ 64 (359)
T 3ieg_A 12 KLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVI 64 (359)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 478899999999987631 1234678889999999999999999998865
No 105
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=96.61 E-value=0.13 Score=54.68 Aligned_cols=161 Identities=9% Similarity=0.091 Sum_probs=101.1
Q ss_pred CCceeEEEEe--CCEEEEEecCCeEEEEeCCCC---CceeeEcCCCCCCccceeEEEeCC--CCCeEEEEeecCCCccEE
Q 002318 21 RGVITCMSAG--NDVIVLGTSKGWLIRHDFGAG---DSYDIDLSAGRPGEQSIHKVFVDP--GGSHCIATIVGSGGAETF 93 (936)
Q Consensus 21 ~~~i~~l~v~--~n~l~l~~~~g~l~ridl~~~---~~~~~~l~~~~~~~~~i~~i~lDp--~G~hlli~~~~~~~g~~~ 93 (936)
.+.|++++.+ ++.|+-|..+|+|..+|+... .+..+.-+ ...|..+-..| .|..++.++. +|...
T Consensus 9 ~~~V~~~~~s~~g~~las~s~D~~v~iw~~~~~~~~~~~~l~gH-----~~~V~~v~~s~~~~g~~l~s~s~---D~~v~ 80 (297)
T 2pm7_B 9 NEMIHDAVMDYYGKRMATCSSDKTIKIFEVEGETHKLIDTLTGH-----EGPVWRVDWAHPKFGTILASCSY---DGKVM 80 (297)
T ss_dssp SSCEEEEEECTTSSEEEEEETTSCEEEEEBCSSCBCCCEEECCC-----SSCEEEEEECCGGGCSEEEEEET---TTEEE
T ss_pred cCceEEEEECCCCCEEEEEeCCCEEEEEecCCCCcEEEEEEccc-----cCCeEEEEecCCCcCCEEEEEcC---CCEEE
Confidence 3568999987 568999999999999999322 22223222 46788887754 3888888877 89998
Q ss_pred EEecCCCCceeccCCC--CceEEEEEecCCCCCCCCcceEEEEcCCCcEEEEEEecCCcccceeeEEeeeCCCCCceeeE
Q 002318 94 YTHAKWSKPRVLSKLK--GLVVNAVAWNRQQITEASTKEIILGTDTGQLHEMAVDEKDKREKYIKLLFELNELPEAFMGL 171 (936)
Q Consensus 94 Y~~~~~~k~k~L~klk--g~~I~sVaw~~~~~~~~st~~iLiGt~~G~i~e~~i~~~~~~~~~~k~v~~l~~~~~~I~gi 171 (936)
.++....+...+..+. ...|.+|+|++.. ....++.|+.+|.|....+....... ...+.-. ..+|.++
T Consensus 81 iWd~~~~~~~~~~~~~~h~~~v~~v~~~p~~----~g~~l~s~s~d~~v~~wd~~~~~~~~---~~~~~~h--~~~v~~~ 151 (297)
T 2pm7_B 81 IWKEENGRWSQIAVHAVHSASVNSVQWAPHE----YGPMLLVASSDGKVSVVEFKENGTTS---PIIIDAH--AIGVNSA 151 (297)
T ss_dssp EEEBSSSCBCCCEEECCCSSCEEEEEECCGG----GCSEEEEEETTSEEEEEEBCSSSCBC---CEEEECC--SSCEEEE
T ss_pred EEEcCCCceEEEEEeecCCCceeEEEeCcCC----CCcEEEEEECCCcEEEEEecCCCcee---eeeeecc--cCccceE
Confidence 8876554322333233 3579999999531 12368889999998887775431111 1122222 3568999
Q ss_pred EEEeeccC--------CCceEEEEEECCCeEEEEe
Q 002318 172 QMETASLS--------NGTRYYVMAVTPTRLYSFT 198 (936)
Q Consensus 172 ~~~~~~~~--------~~~~~~i~ast~~rly~f~ 198 (936)
.|...... ...+.++.++....+.-|.
T Consensus 152 ~~~p~~~~~~~~~~~~~~~~~l~sgs~D~~v~lwd 186 (297)
T 2pm7_B 152 SWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWK 186 (297)
T ss_dssp EECCCC------------CCEEEEEETTSCEEEEE
T ss_pred eecCCcccccccCCCCCCcceEEEEcCCCcEEEEE
Confidence 88642100 0124677666666666564
No 106
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=96.56 E-value=0.77 Score=50.97 Aligned_cols=154 Identities=6% Similarity=-0.053 Sum_probs=90.7
Q ss_pred CceeEEEEeC-CEE-EEEecCCeEEEEeC-CCCCceeeEcCCCCCCccceeEEEeCCCCCeEEEEeecCCCccEEEEecC
Q 002318 22 GVITCMSAGN-DVI-VLGTSKGWLIRHDF-GAGDSYDIDLSAGRPGEQSIHKVFVDPGGSHCIATIVGSGGAETFYTHAK 98 (936)
Q Consensus 22 ~~i~~l~v~~-n~l-~l~~~~g~l~ridl-~~~~~~~~~l~~~~~~~~~i~~i~lDp~G~hlli~~~~~~~g~~~Y~~~~ 98 (936)
+.+.+++++. +.+ +.+..+|.|.+||+ ....+..+..+........|..+.++|.|..++.++. +|..+.+...
T Consensus 123 ~~~~~~~~s~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~---d~~v~~~d~~ 199 (433)
T 3bws_A 123 FQPKSVRFIDNTRLAIPLLEDEGMDVLDINSGQTVRLSPPEKYKKKLGFVETISIPEHNELWVSQMQ---ANAVHVFDLK 199 (433)
T ss_dssp SCBCCCEESSSSEEEEEBTTSSSEEEEETTTCCEEEECCCHHHHTTCCEEEEEEEGGGTEEEEEEGG---GTEEEEEETT
T ss_pred CCceEEEEeCCCeEEEEeCCCCeEEEEECCCCeEeeecCcccccccCCceeEEEEcCCCEEEEEECC---CCEEEEEECC
Confidence 3456778763 444 44445678999999 4443322221110112357888999999987766666 7888877765
Q ss_pred CCCce-eccCCCCceEEEEEecCCCCCCCCcceEE-EEcCCCcEEEEEEecCCcccceeeEEeeeCCCCCceeeEEEEee
Q 002318 99 WSKPR-VLSKLKGLVVNAVAWNRQQITEASTKEII-LGTDTGQLHEMAVDEKDKREKYIKLLFELNELPEAFMGLQMETA 176 (936)
Q Consensus 99 ~~k~k-~L~klkg~~I~sVaw~~~~~~~~st~~iL-iGt~~G~i~e~~i~~~~~~~~~~k~v~~l~~~~~~I~gi~~~~~ 176 (936)
..+.. .+. ..+..+.+++|++. ...++ .|..+|.|+...+... +.+..++. .+.+.++.|..
T Consensus 200 ~~~~~~~~~-~~~~~~~~~~~~~~------~~~l~~~~~~~~~i~~~d~~~~-------~~~~~~~~-~~~~~~~~~~~- 263 (433)
T 3bws_A 200 TLAYKATVD-LTGKWSKILLYDPI------RDLVYCSNWISEDISVIDRKTK-------LEIRKTDK-IGLPRGLLLSK- 263 (433)
T ss_dssp TCCEEEEEE-CSSSSEEEEEEETT------TTEEEEEETTTTEEEEEETTTT-------EEEEECCC-CSEEEEEEECT-
T ss_pred CceEEEEEc-CCCCCeeEEEEcCC------CCEEEEEecCCCcEEEEECCCC-------cEEEEecC-CCCceEEEEcC-
Confidence 54432 232 34668999999943 12453 4457898887765432 22223332 24578888862
Q ss_pred ccCCCceEEEEEE--------CCCeEEEEe
Q 002318 177 SLSNGTRYYVMAV--------TPTRLYSFT 198 (936)
Q Consensus 177 ~~~~~~~~~i~as--------t~~rly~f~ 198 (936)
+.+.+++++ +...++.|.
T Consensus 264 ----~g~~l~~~~~~~~~~~~~dg~i~~~d 289 (433)
T 3bws_A 264 ----DGKELYIAQFSASNQESGGGRLGIYS 289 (433)
T ss_dssp ----TSSEEEEEEEESCTTCSCCEEEEEEE
T ss_pred ----CCCEEEEEECCCCccccCCCeEEEEE
Confidence 224566555 244677665
No 107
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=96.53 E-value=1 Score=48.06 Aligned_cols=151 Identities=12% Similarity=0.027 Sum_probs=92.2
Q ss_pred ceeEEEEeC--CEEEEEec-------CCeEEEEeC-CCCCceeeEcCCCCCCccceeEEEeCCCCCeEEEEeecCCCccE
Q 002318 23 VITCMSAGN--DVIVLGTS-------KGWLIRHDF-GAGDSYDIDLSAGRPGEQSIHKVFVDPGGSHCIATIVGSGGAET 92 (936)
Q Consensus 23 ~i~~l~v~~--n~l~l~~~-------~g~l~ridl-~~~~~~~~~l~~~~~~~~~i~~i~lDp~G~hlli~~~~~~~g~~ 92 (936)
.+.+++++. +.++++.. +|.|+++|+ ....+..++.+ ..+..+.++|.|.+++++.. .++..
T Consensus 42 ~~~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~------~~~~~~~~s~dg~~l~v~~~--~~~~v 113 (353)
T 3vgz_A 42 GAYEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVTLEVTQAIHND------LKPFGATINNTTQTLWFGNT--VNSAV 113 (353)
T ss_dssp SEEEEEEETTTTEEEEEECCCTTTEESEEEEEECTTTCCEEEEEEES------SCCCSEEEETTTTEEEEEET--TTTEE
T ss_pred CccceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCCCeEEEEEecC------CCcceEEECCCCCEEEEEec--CCCEE
Confidence 356777776 47888774 568999999 65555666654 24577889999999888765 24666
Q ss_pred EEEecCCCCceeccCCC-C--------ceEEEEEecCCCCCCCCcceEEEEc--CCCcEEEEEEecCCcccceeeEEeee
Q 002318 93 FYTHAKWSKPRVLSKLK-G--------LVVNAVAWNRQQITEASTKEIILGT--DTGQLHEMAVDEKDKREKYIKLLFEL 161 (936)
Q Consensus 93 ~Y~~~~~~k~k~L~klk-g--------~~I~sVaw~~~~~~~~st~~iLiGt--~~G~i~e~~i~~~~~~~~~~k~v~~l 161 (936)
+.++....+........ + ..+.+++|++. .+.+++++ .+|.|+...+... +.+..+
T Consensus 114 ~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d------g~~l~~~~~~~~~~i~~~d~~~~-------~~~~~~ 180 (353)
T 3vgz_A 114 TAIDAKTGEVKGRLVLDDRKRTEEVRPLQPRELVADDA------TNTVYISGIGKESVIWVVDGGNI-------KLKTAI 180 (353)
T ss_dssp EEEETTTCCEEEEEESCCCCCCSSCCCCEEEEEEEETT------TTEEEEEEESSSCEEEEEETTTT-------EEEEEE
T ss_pred EEEeCCCCeeEEEEecCCCccccccCCCCCceEEECCC------CCEEEEEecCCCceEEEEcCCCC-------ceEEEe
Confidence 66766555432211111 1 13789999843 23566665 3677887765432 122223
Q ss_pred CCCCCceeeEEEEeeccCCCceEEEEEECCCeEEEEec
Q 002318 162 NELPEAFMGLQMETASLSNGTRYYVMAVTPTRLYSFTG 199 (936)
Q Consensus 162 ~~~~~~I~gi~~~~~~~~~~~~~~i~ast~~rly~f~~ 199 (936)
+.....+.++.|.. +.+.+++++....++.|..
T Consensus 181 ~~~~~~~~~~~~s~-----dg~~l~~~~~~~~i~~~d~ 213 (353)
T 3vgz_A 181 QNTGKMSTGLALDS-----EGKRLYTTNADGELITIDT 213 (353)
T ss_dssp CCCCTTCCCCEEET-----TTTEEEEECTTSEEEEEET
T ss_pred cCCCCccceEEECC-----CCCEEEEEcCCCeEEEEEC
Confidence 31113477888862 2245666556677886653
No 108
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=96.51 E-value=0.05 Score=61.01 Aligned_cols=118 Identities=15% Similarity=0.098 Sum_probs=78.2
Q ss_pred CCCceeEEEEeC---CEEEEEecCCeEEEEeC-CCCC----ceeeEcCCCCCC-------ccceeEEEeCCCCCeEEEEe
Q 002318 20 GRGVITCMSAGN---DVIVLGTSKGWLIRHDF-GAGD----SYDIDLSAGRPG-------EQSIHKVFVDPGGSHCIATI 84 (936)
Q Consensus 20 ~~~~i~~l~v~~---n~l~l~~~~g~l~ridl-~~~~----~~~~~l~~~~~~-------~~~i~~i~lDp~G~hlli~~ 84 (936)
..+.|++++.++ +.++.|..+|.|..+|+ .+.. +..+..+..... ...|..+-++|.|.+++.++
T Consensus 225 ~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~ 304 (447)
T 3dw8_B 225 LTEVITAAEFHPNSCNTFVYSSSKGTIRLCDMRASALCDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRD 304 (447)
T ss_dssp CCCCEEEEEECSSCTTEEEEEETTSCEEEEETTTCSSSCTTCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEE
T ss_pred cCcceEEEEECCCCCcEEEEEeCCCeEEEEECcCCccccceeeEeccCCCccccccccccCceEEEEEECCCCCEEEEee
Confidence 345799999986 68999999999999999 5443 333433311000 02799999999999887665
Q ss_pred ecCCCccEEEEecCCCCceeccCCCCce-----------------EEEEEecCCCCCCCCcceEEEEcCCCcEEEEEEec
Q 002318 85 VGSGGAETFYTHAKWSKPRVLSKLKGLV-----------------VNAVAWNRQQITEASTKEIILGTDTGQLHEMAVDE 147 (936)
Q Consensus 85 ~~~~~g~~~Y~~~~~~k~k~L~klkg~~-----------------I~sVaw~~~~~~~~st~~iLiGt~~G~i~e~~i~~ 147 (936)
. |....++.... .+.+..+.++. +.+++|++. ...++.|+.+|.|+...+..
T Consensus 305 ~----~~v~iwd~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~s~~------~~~l~s~s~dg~v~iwd~~~ 373 (447)
T 3dw8_B 305 Y----LSVKVWDLNME-NRPVETYQVHEYLRSKLCSLYENDCIFDKFECCWNGS------DSVVMTGSYNNFFRMFDRNT 373 (447)
T ss_dssp S----SEEEEEETTCC-SSCSCCEESCGGGTTTHHHHHHTSGGGCCCCEEECTT------SSEEEEECSTTEEEEEETTT
T ss_pred C----CeEEEEeCCCC-ccccceeeccccccccccccccccccccceEEEECCC------CCEEEEeccCCEEEEEEcCC
Confidence 4 77777766541 12333334332 345899843 23688899999998877654
Q ss_pred C
Q 002318 148 K 148 (936)
Q Consensus 148 ~ 148 (936)
+
T Consensus 374 ~ 374 (447)
T 3dw8_B 374 K 374 (447)
T ss_dssp C
T ss_pred C
Confidence 3
No 109
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=96.50 E-value=0.0048 Score=58.42 Aligned_cols=34 Identities=18% Similarity=0.585 Sum_probs=26.8
Q ss_pred ccccccccchhhhhcccccccccccCCCCCCCCEEEEcCCChhHHHhHHHHHh
Q 002318 832 RDEDCGVCRRKILVAGRDYRMARGYASVGPMAPFYVFPCGHAFHAQCLIAHVT 884 (936)
Q Consensus 832 ~~~~C~~C~k~L~~~~~~~~~~~~~~~~~~~~~fvvFpCgH~fH~~CL~~~~~ 884 (936)
..-.|.+|...+.. | ++.||||.||..|+.....
T Consensus 52 ~~~~C~iC~~~~~~------------------~-~~~~CgH~fc~~Ci~~~~~ 85 (138)
T 4ayc_A 52 NELQCIICSEYFIE------------------A-VTLNCAHSFCSYCINEWMK 85 (138)
T ss_dssp HHSBCTTTCSBCSS------------------E-EEETTSCEEEHHHHHHHTT
T ss_pred ccCCCcccCcccCC------------------c-eECCCCCCccHHHHHHHHH
Confidence 34579999977654 3 5679999999999998764
No 110
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=96.44 E-value=0.15 Score=56.63 Aligned_cols=159 Identities=11% Similarity=0.095 Sum_probs=100.7
Q ss_pred CCceeEEEEe--CCEEEEEecCCeEEEEeC-CCCCceeeEcCCCCCCccceeEEEeCC-CCCeEEEEeecCCCccEEEEe
Q 002318 21 RGVITCMSAG--NDVIVLGTSKGWLIRHDF-GAGDSYDIDLSAGRPGEQSIHKVFVDP-GGSHCIATIVGSGGAETFYTH 96 (936)
Q Consensus 21 ~~~i~~l~v~--~n~l~l~~~~g~l~ridl-~~~~~~~~~l~~~~~~~~~i~~i~lDp-~G~hlli~~~~~~~g~~~Y~~ 96 (936)
.+.|++++.+ ++.|+.|..+|+|..||+ .+.....+.. ...+..+.+.| .|..+++++. +|....++
T Consensus 165 ~~~v~~~~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~------~~~v~~~~~~~~~~~~l~~~s~---d~~v~iwd 235 (393)
T 1erj_A 165 EQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSI------EDGVTTVAVSPGDGKYIAAGSL---DRAVRVWD 235 (393)
T ss_dssp SSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEEC------SSCEEEEEECSTTCCEEEEEET---TSCEEEEE
T ss_pred CCCEEEEEEcCCCCEEEEecCCCcEEEEECCCCeeEEEEEc------CCCcEEEEEECCCCCEEEEEcC---CCcEEEEE
Confidence 4568999986 458899999999999999 4443333332 24678888888 7888888887 89888777
Q ss_pred cCCCCc-eecc------CCCCceEEEEEecCCCCCCCCcceEEEEcCCCcEEEEEEecCCccc-----ceeeEEeeeCCC
Q 002318 97 AKWSKP-RVLS------KLKGLVVNAVAWNRQQITEASTKEIILGTDTGQLHEMAVDEKDKRE-----KYIKLLFELNEL 164 (936)
Q Consensus 97 ~~~~k~-k~L~------klkg~~I~sVaw~~~~~~~~st~~iLiGt~~G~i~e~~i~~~~~~~-----~~~k~v~~l~~~ 164 (936)
....+. +.+. .-....|.+|+|++. ...++.|+.+|.|....+....... ........+.+-
T Consensus 236 ~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~------g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~h 309 (393)
T 1erj_A 236 SETGFLVERLDSENESGTGHKDSVYSVVFTRD------GQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGH 309 (393)
T ss_dssp TTTCCEEEEEC------CCCSSCEEEEEECTT------SSEEEEEETTSEEEEEEC---------------CEEEEEECC
T ss_pred CCCCcEEEeecccccCCCCCCCCEEEEEECCC------CCEEEEEeCCCEEEEEECCCCCCcccccCCCCCcceEEEecc
Confidence 654432 1221 112347999999943 2478889999998887765321000 001111122221
Q ss_pred CCceeeEEEEeeccCCCceEEEEEECCCeEEEEec
Q 002318 165 PEAFMGLQMETASLSNGTRYYVMAVTPTRLYSFTG 199 (936)
Q Consensus 165 ~~~I~gi~~~~~~~~~~~~~~i~ast~~rly~f~~ 199 (936)
...|.++.+.. +.++++.++....++-|.-
T Consensus 310 ~~~v~~~~~~~-----~~~~l~sgs~D~~v~iwd~ 339 (393)
T 1erj_A 310 KDFVLSVATTQ-----NDEYILSGSKDRGVLFWDK 339 (393)
T ss_dssp SSCEEEEEECG-----GGCEEEEEETTSEEEEEET
T ss_pred cCcEEEEEECC-----CCCEEEEEeCCCeEEEEEC
Confidence 25688888762 3357777777888887863
No 111
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=96.37 E-value=0.058 Score=60.52 Aligned_cols=162 Identities=10% Similarity=0.152 Sum_probs=100.2
Q ss_pred CCceeEEEEeC--CEEEEEecCCeEEEEeC-CCCC-----------ceeeEcCCCC-------CCccceeEEEeCCCC--
Q 002318 21 RGVITCMSAGN--DVIVLGTSKGWLIRHDF-GAGD-----------SYDIDLSAGR-------PGEQSIHKVFVDPGG-- 77 (936)
Q Consensus 21 ~~~i~~l~v~~--n~l~l~~~~g~l~ridl-~~~~-----------~~~~~l~~~~-------~~~~~i~~i~lDp~G-- 77 (936)
.+.|+|++.+. +.|+.|..+|.|..||+ .+.. ...+.-+... .....|..+-..|.|
T Consensus 28 ~~~V~~v~~s~~g~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~~~~~ 107 (447)
T 3dw8_B 28 ADIISTVEFNHSGELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQKNA 107 (447)
T ss_dssp GGSEEEEEECSSSSEEEEEETTSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEEECCCCSS
T ss_pred cCcEEEEEECCCCCEEEEEcCCCeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCceEEEEEcCCCCc
Confidence 36799999986 48999999999999999 4331 2222222100 001679999999998
Q ss_pred CeEEEEeecCCCccEEEEecCCCCc----------------------------------------eeccCCCCceEEEEE
Q 002318 78 SHCIATIVGSGGAETFYTHAKWSKP----------------------------------------RVLSKLKGLVVNAVA 117 (936)
Q Consensus 78 ~hlli~~~~~~~g~~~Y~~~~~~k~----------------------------------------k~L~klkg~~I~sVa 117 (936)
.++++++. +|....+.....+. +.+..-....|.+++
T Consensus 108 ~~l~s~s~---d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~ 184 (447)
T 3dw8_B 108 AQFLLSTN---DKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHINSIS 184 (447)
T ss_dssp SEEEEEEC---SSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCCCEEE
T ss_pred ceEEEeCC---CCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcceEEEE
Confidence 78888877 88887776433111 011122345799999
Q ss_pred ecCCCCCCCCcceEEEEcCCCcEEEEEEecCCcccceeeEEe----eeCCCCCceeeEEEEeeccCCCceEEEEEECCCe
Q 002318 118 WNRQQITEASTKEIILGTDTGQLHEMAVDEKDKREKYIKLLF----ELNELPEAFMGLQMETASLSNGTRYYVMAVTPTR 193 (936)
Q Consensus 118 w~~~~~~~~st~~iLiGt~~G~i~e~~i~~~~~~~~~~k~v~----~l~~~~~~I~gi~~~~~~~~~~~~~~i~ast~~r 193 (936)
|++. ...++.| .+|.|....+... .+.++.+- .+..-.++|+++.|.. ...+.++.++....
T Consensus 185 ~~~~------~~~l~s~-~d~~i~iwd~~~~---~~~~~~~~~~~~~~~~~~~~v~~~~~~p----~~~~~l~s~~~dg~ 250 (447)
T 3dw8_B 185 INSD------YETYLSA-DDLRINLWHLEIT---DRSFNIVDIKPANMEELTEVITAAEFHP----NSCNTFVYSSSKGT 250 (447)
T ss_dssp ECTT------SSEEEEE-CSSEEEEEETTEE---EEEEEEEECCCSSGGGCCCCEEEEEECS----SCTTEEEEEETTSC
T ss_pred EcCC------CCEEEEe-CCCeEEEEECCCC---CceeeeeecccccccccCcceEEEEECC----CCCcEEEEEeCCCe
Confidence 9942 2256666 8999988776532 11222110 1222236799999973 21257777777777
Q ss_pred EEEEec
Q 002318 194 LYSFTG 199 (936)
Q Consensus 194 ly~f~~ 199 (936)
+.-|.-
T Consensus 251 i~iwd~ 256 (447)
T 3dw8_B 251 IRLCDM 256 (447)
T ss_dssp EEEEET
T ss_pred EEEEEC
Confidence 887763
No 112
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=96.36 E-value=0.066 Score=64.56 Aligned_cols=155 Identities=11% Similarity=0.086 Sum_probs=101.5
Q ss_pred CCceeEEEEe---CCEEEEEecCCeEEEEeC-CCCCce-----eeEcCCCCCCccceeEEEeCCCCCeEEEEeecCCCcc
Q 002318 21 RGVITCMSAG---NDVIVLGTSKGWLIRHDF-GAGDSY-----DIDLSAGRPGEQSIHKVFVDPGGSHCIATIVGSGGAE 91 (936)
Q Consensus 21 ~~~i~~l~v~---~n~l~l~~~~g~l~ridl-~~~~~~-----~~~l~~~~~~~~~i~~i~lDp~G~hlli~~~~~~~g~ 91 (936)
.+.|+|++.+ .++|+-|..+|+|..||+ ...... .+.-| ...|..+.+.|.|.+++.++. +|.
T Consensus 382 ~~~V~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~~~~~~~~~~~h-----~~~v~~v~~s~~g~~l~sgs~---Dg~ 453 (694)
T 3dm0_A 382 TDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGH-----SHFVEDVVLSSDGQFALSGSW---DGE 453 (694)
T ss_dssp SSCEEEEECCTTCCSEEEEEETTSEEEEEECCCSTTCSCEEEEEEECC-----SSCEEEEEECTTSSEEEEEET---TSE
T ss_pred CceeEEEEecCCCCCEEEEEeCCCcEEEEEccCCCcccccccceecCC-----CCcEEEEEECCCCCEEEEEeC---CCc
Confidence 4679999987 358999999999999999 433221 12222 467999999999999999888 899
Q ss_pred EEEEecCCCCc-eeccCCCCceEEEEEecCCCCCCCCcceEEEEcCCCcEEEEEEecCCcccceeeEEeee-CCCCCcee
Q 002318 92 TFYTHAKWSKP-RVLSKLKGLVVNAVAWNRQQITEASTKEIILGTDTGQLHEMAVDEKDKREKYIKLLFEL-NELPEAFM 169 (936)
Q Consensus 92 ~~Y~~~~~~k~-k~L~klkg~~I~sVaw~~~~~~~~st~~iLiGt~~G~i~e~~i~~~~~~~~~~k~v~~l-~~~~~~I~ 169 (936)
...++....+. +.+.. ....|.+|+|++. ...++.|+.+|.|....+... ....+... ..-...|+
T Consensus 454 v~vwd~~~~~~~~~~~~-h~~~v~~~~~s~~------~~~l~s~s~D~~i~iwd~~~~-----~~~~~~~~~~~h~~~v~ 521 (694)
T 3dm0_A 454 LRLWDLAAGVSTRRFVG-HTKDVLSVAFSLD------NRQIVSASRDRTIKLWNTLGE-----CKYTISEGGEGHRDWVS 521 (694)
T ss_dssp EEEEETTTTEEEEEEEC-CSSCEEEEEECTT------SSCEEEEETTSCEEEECTTSC-----EEEEECSSTTSCSSCEE
T ss_pred EEEEECCCCcceeEEeC-CCCCEEEEEEeCC------CCEEEEEeCCCEEEEEECCCC-----cceeeccCCCCCCCcEE
Confidence 98887655432 22321 2347999999943 247889999998876643221 11111111 11124588
Q ss_pred eEEEEeeccCCCceEEEEEECCCeEEEEe
Q 002318 170 GLQMETASLSNGTRYYVMAVTPTRLYSFT 198 (936)
Q Consensus 170 gi~~~~~~~~~~~~~~i~ast~~rly~f~ 198 (936)
++.|.. ++....++-++....+.-|.
T Consensus 522 ~~~~~~---~~~~~~l~s~s~d~~v~vwd 547 (694)
T 3dm0_A 522 CVRFSP---NTLQPTIVSASWDKTVKVWN 547 (694)
T ss_dssp EEEECS---CSSSCEEEEEETTSCEEEEE
T ss_pred EEEEeC---CCCcceEEEEeCCCeEEEEE
Confidence 888863 12224666666677777775
No 113
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=96.32 E-value=0.42 Score=54.22 Aligned_cols=47 Identities=13% Similarity=0.153 Sum_probs=36.0
Q ss_pred HHHchhhHHHHHHhcCC-----hhhHHHHHHHHHHHHHhcCCHHHHHHHHHHhc
Q 002318 370 VYLDMKEYAAALANCRD-----PLQRDQVYLVQAEAAFATKDFHRAASFYAKIN 418 (936)
Q Consensus 370 ~ll~~~~f~~Al~~~~~-----~~~~~~I~~~~~~~L~~~g~y~~Aa~~y~~~~ 418 (936)
.+++.|+|++|+...+. | -.......|..++..|+|++|...|.+..
T Consensus 15 ~~~~~g~~~~A~~~~~~al~~~p--~~~~~~~la~~~~~~g~~~~A~~~~~~al 66 (514)
T 2gw1_A 15 QFFRNKKYDDAIKYYNWALELKE--DPVFYSNLSACYVSVGDLKKVVEMSTKAL 66 (514)
T ss_dssp HHHHTSCHHHHHHHHHHHHHHCC--CHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHhccHHHHHHHHHHHHhcCc--cHHHHHhHHHHHHHHhhHHHHHHHHHHHh
Confidence 47778888888887652 3 24567778888888999999988888764
No 114
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=96.31 E-value=0.001 Score=51.92 Aligned_cols=39 Identities=26% Similarity=0.610 Sum_probs=30.6
Q ss_pred ccccccccchhhhhcccccccccccCCCCCCCCEEEEcCCChhHHHhHHHHHhh
Q 002318 832 RDEDCGVCRRKILVAGRDYRMARGYASVGPMAPFYVFPCGHAFHAQCLIAHVTQ 885 (936)
Q Consensus 832 ~~~~C~~C~k~L~~~~~~~~~~~~~~~~~~~~~fvvFpCgH~fH~~CL~~~~~~ 885 (936)
....|.+|...+...+ + ..++.+|||.||..|+...+..
T Consensus 4 ~~~~C~IC~~~~~~~~---~------------~~~~~~CgH~fc~~Ci~~~~~~ 42 (55)
T 2ecm_A 4 GSSGCPICLEDIHTSR---V------------VAHVLPCGHLLHRTCYEEMLKE 42 (55)
T ss_dssp CCCSCTTTCCCCCTTT---S------------CEEECTTSCEEETTHHHHHHHH
T ss_pred CCCcCcccChhhcCCC---c------------CeEecCCCCcccHHHHHHHHHc
Confidence 3568999998875521 1 6788999999999999987754
No 115
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=96.24 E-value=1.4 Score=46.02 Aligned_cols=146 Identities=14% Similarity=0.141 Sum_probs=92.6
Q ss_pred eEEEEe-CCEEEEEecCCeEEEEeC-CCCCceeeEcCCCCCCccceeEEEeCCCCCeEEEEeecCCCccEEEEecCCCCc
Q 002318 25 TCMSAG-NDVIVLGTSKGWLIRHDF-GAGDSYDIDLSAGRPGEQSIHKVFVDPGGSHCIATIVGSGGAETFYTHAKWSKP 102 (936)
Q Consensus 25 ~~l~v~-~n~l~l~~~~g~l~ridl-~~~~~~~~~l~~~~~~~~~i~~i~lDp~G~hlli~~~~~~~g~~~Y~~~~~~k~ 102 (936)
.+|+-+ +|+|+.|+ +|+|..||+ .+..+..+.++. ....|..+...|.|.+++.++. +|....++....+
T Consensus 29 ~~l~WS~~~~lAvg~-D~tV~iWd~~tg~~~~~~~~~~---~~~~V~~v~~~~~~~~l~sgs~---Dg~v~iw~~~~~~- 100 (318)
T 4ggc_A 29 NLVDWSSGNVLAVAL-DNSVYLWSASSGDILQLLQMEQ---PGEYISSVAWIKEGNYLAVGTS---SAEVQLWDVQQQK- 100 (318)
T ss_dssp BCEEECTTSEEEEEE-TTEEEEEETTTCCEEEEEECCS---TTCCEEEEEECTTSSEEEEEET---TSEEEEEETTTTE-
T ss_pred eEEEECCCCEEEEEe-CCEEEEEECCCCCEEEEEEecC---CCCeEEEEEECCCCCEEEEEEC---CCcEEEeecCCce-
Confidence 456665 46788887 679999999 555455555542 2467999999999999999888 8999888776543
Q ss_pred eeccCCCCc--eEEEEEecCCCCCCCCcceEEEEcCCCcEEEEEEecCCcccceeeEEeeeCCCCCceeeEEEEeeccCC
Q 002318 103 RVLSKLKGL--VVNAVAWNRQQITEASTKEIILGTDTGQLHEMAVDEKDKREKYIKLLFELNELPEAFMGLQMETASLSN 180 (936)
Q Consensus 103 k~L~klkg~--~I~sVaw~~~~~~~~st~~iLiGt~~G~i~e~~i~~~~~~~~~~k~v~~l~~~~~~I~gi~~~~~~~~~ 180 (936)
.+..++|+ .+.+++++. .-+..|+.+|.+........ ..... .+.....++..+.+..
T Consensus 101 -~~~~~~~h~~~~~~~~~~~--------~~l~s~~~~~~~~~~~~~~~---~~~~~---~~~~~~~~~~~~~~~~----- 160 (318)
T 4ggc_A 101 -RLRNMTSHSARVGSLSWNS--------YILSSGSRSGHIHHHDVRVA---EHHVA---TLSGHSQEVCGLRWAP----- 160 (318)
T ss_dssp -EEEEEECCSSCEEEEEEET--------TEEEEEETTSEEEEEETTSS---SCEEE---EEECCSSCEEEEEECT-----
T ss_pred -eEEEecCccceEEEeecCC--------CEEEEEecCCceEeeecCCC---ceeEE---EEcCccCceEEEEEcC-----
Confidence 33333443 555555551 25777888887766544332 11112 2222235577777652
Q ss_pred CceEEEEEECCCeEEEEe
Q 002318 181 GTRYYVMAVTPTRLYSFT 198 (936)
Q Consensus 181 ~~~~~i~ast~~rly~f~ 198 (936)
..+.++.++....+.-|.
T Consensus 161 ~~~~l~s~~~d~~i~iwd 178 (318)
T 4ggc_A 161 DGRHLASGGNDNLVNVWP 178 (318)
T ss_dssp TSSEEEEEETTSCEEEEE
T ss_pred CCCEEEEEecCcceeEEE
Confidence 235666666667777675
No 116
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=96.20 E-value=1.9 Score=46.94 Aligned_cols=139 Identities=8% Similarity=0.081 Sum_probs=86.0
Q ss_pred EEEEEecCCeEEEEeC-CCCCceeeEcCCCCCCccceeEEEeCCCCCeEEEEeecCCCccEEEEecCCCCceeccCCCCc
Q 002318 33 VIVLGTSKGWLIRHDF-GAGDSYDIDLSAGRPGEQSIHKVFVDPGGSHCIATIVGSGGAETFYTHAKWSKPRVLSKLKGL 111 (936)
Q Consensus 33 ~l~l~~~~g~l~ridl-~~~~~~~~~l~~~~~~~~~i~~i~lDp~G~hlli~~~~~~~g~~~Y~~~~~~k~k~L~klkg~ 111 (936)
+++.+..+|.|..||+ .......+..+ ..+..+-++|.|.+++++.. .+|..+.++....+...... .+.
T Consensus 4 l~vs~~~d~~v~v~d~~~~~~~~~~~~~------~~~~~~~~s~dg~~l~~~~~--~d~~i~v~d~~~~~~~~~~~-~~~ 74 (391)
T 1l0q_A 4 AYIANSESDNISVIDVTSNKVTATIPVG------SNPMGAVISPDGTKVYVANA--HSNDVSIIDTATNNVIATVP-AGS 74 (391)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEEECS------SSEEEEEECTTSSEEEEEEG--GGTEEEEEETTTTEEEEEEE-CSS
T ss_pred EEEEcCCCCEEEEEECCCCeEEEEeecC------CCcceEEECCCCCEEEEECC--CCCeEEEEECCCCeEEEEEE-CCC
Confidence 4556667899999999 44434444433 35789999999999877652 16777777765554333222 234
Q ss_pred eEEEEEecCCCCCCCCcceEEEE-cCCCcEEEEEEecCCcccceeeEEeeeCCCCCceeeEEEEeeccCCCceEEEEEE-
Q 002318 112 VVNAVAWNRQQITEASTKEIILG-TDTGQLHEMAVDEKDKREKYIKLLFELNELPEAFMGLQMETASLSNGTRYYVMAV- 189 (936)
Q Consensus 112 ~I~sVaw~~~~~~~~st~~iLiG-t~~G~i~e~~i~~~~~~~~~~k~v~~l~~~~~~I~gi~~~~~~~~~~~~~~i~as- 189 (936)
.+.+++|++. ...++++ ..+|.|+...+..+ + ....+... ..+.++.|.. +.+.++++.
T Consensus 75 ~v~~~~~spd------g~~l~~~~~~~~~v~v~d~~~~----~-~~~~~~~~---~~~~~~~~s~-----dg~~l~~~~~ 135 (391)
T 1l0q_A 75 SPQGVAVSPD------GKQVYVTNMASSTLSVIDTTSN----T-VAGTVKTG---KSPLGLALSP-----DGKKLYVTNN 135 (391)
T ss_dssp SEEEEEECTT------SSEEEEEETTTTEEEEEETTTT----E-EEEEEECS---SSEEEEEECT-----TSSEEEEEET
T ss_pred CccceEECCC------CCEEEEEECCCCEEEEEECCCC----e-EEEEEeCC---CCcceEEECC-----CCCEEEEEeC
Confidence 8999999943 2245444 45698888766543 1 12222332 4578888862 224454434
Q ss_pred CCCeEEEEec
Q 002318 190 TPTRLYSFTG 199 (936)
Q Consensus 190 t~~rly~f~~ 199 (936)
....++.|.-
T Consensus 136 ~~~~v~~~d~ 145 (391)
T 1l0q_A 136 GDKTVSVINT 145 (391)
T ss_dssp TTTEEEEEET
T ss_pred CCCEEEEEEC
Confidence 3778887753
No 117
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=96.19 E-value=0.081 Score=56.85 Aligned_cols=163 Identities=12% Similarity=0.103 Sum_probs=97.1
Q ss_pred CCceeEEEEeCC----EEEEEecCCeEEEEeC-CCCCceeeEcCCCCCCccceeEEEeCCC-----------------CC
Q 002318 21 RGVITCMSAGND----VIVLGTSKGWLIRHDF-GAGDSYDIDLSAGRPGEQSIHKVFVDPG-----------------GS 78 (936)
Q Consensus 21 ~~~i~~l~v~~n----~l~l~~~~g~l~ridl-~~~~~~~~~l~~~~~~~~~i~~i~lDp~-----------------G~ 78 (936)
.+.|.+++.+.+ +++.|..+|+|..+|+ .+.......... .....|..+..+|. |.
T Consensus 103 ~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~~~~~~~~~--~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (316)
T 3bg1_A 103 DSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVKKINN--AHTIGCNAVSWAPAVVPGSLIDHPSGQKPNYIK 180 (316)
T ss_dssp SSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSCEEECCBTT--SSSSCBCCCEECCCCCC------CCSCCCCCCC
T ss_pred CCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCCcceeeeec--cccCCcceEEEccccCCccccccccccCccccc
Confidence 356899999854 7899999999999999 432221111110 11234556666665 34
Q ss_pred eEEEEeecCCCccEEEEecCCC-CceeccCCCCc--eEEEEEecCCCCCCCCcceEEEEcCCCcEEEEEEecCCccccee
Q 002318 79 HCIATIVGSGGAETFYTHAKWS-KPRVLSKLKGL--VVNAVAWNRQQITEASTKEIILGTDTGQLHEMAVDEKDKREKYI 155 (936)
Q Consensus 79 hlli~~~~~~~g~~~Y~~~~~~-k~k~L~klkg~--~I~sVaw~~~~~~~~st~~iLiGt~~G~i~e~~i~~~~~~~~~~ 155 (936)
.++.++. +|....++.... +.+.+..++|+ .|.+|+|++... .....++.|+.+|.|....+..........
T Consensus 181 ~l~sgs~---D~~v~lWd~~~~~~~~~~~~l~~h~~~V~~v~~sp~~~--~~~~~las~s~D~~v~iw~~~~~~~~~~~~ 255 (316)
T 3bg1_A 181 RFASGGC---DNLIKLWKEEEDGQWKEEQKLEAHSDWVRDVAWAPSIG--LPTSTIASCSQDGRVFIWTCDDASSNTWSP 255 (316)
T ss_dssp BEECCBT---TSBCCEEEECTTSCEEEEECCBCCSSCEEEEECCCCSS--CSCCEEEEEETTCEEEEEECSSTTCCCCBC
T ss_pred eEEEecC---CCeEEEEEeCCCCccceeeecccCCCceEEEEecCCCC--CCCceEEEEcCCCeEEEEEccCccccchhh
Confidence 5555555 777766665432 22445556664 699999995421 112468889999999887765421111111
Q ss_pred eEEeeeCCCCCceeeEEEEeeccCCCceEEEEEECCCeEEEEe
Q 002318 156 KLLFELNELPEAFMGLQMETASLSNGTRYYVMAVTPTRLYSFT 198 (936)
Q Consensus 156 k~v~~l~~~~~~I~gi~~~~~~~~~~~~~~i~ast~~rly~f~ 198 (936)
+.+... .++|.++.|.. +.+.++.++....+.-|.
T Consensus 256 ~~~~~~---~~~v~~v~~sp-----~g~~las~~~D~~v~lw~ 290 (316)
T 3bg1_A 256 KLLHKF---NDVVWHVSWSI-----TANILAVSGGDNKVTLWK 290 (316)
T ss_dssp CEEEEC---SSCEEEEEECT-----TTCCEEEEESSSCEEEEE
T ss_pred hhhhcC---CCcEEEEEEcC-----CCCEEEEEcCCCeEEEEE
Confidence 222222 25799999863 235677777777677664
No 118
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=96.16 E-value=1.1 Score=47.05 Aligned_cols=94 Identities=9% Similarity=-0.111 Sum_probs=58.9
Q ss_pred eeEEEEe--CC-EEEEEecCCeEEEEeCCCCCceeeEcCCCCCCccceeEEEeCCCCCeEEEEeecCCCccEEEEecCCC
Q 002318 24 ITCMSAG--ND-VIVLGTSKGWLIRHDFGAGDSYDIDLSAGRPGEQSIHKVFVDPGGSHCIATIVGSGGAETFYTHAKWS 100 (936)
Q Consensus 24 i~~l~v~--~n-~l~l~~~~g~l~ridl~~~~~~~~~l~~~~~~~~~i~~i~lDp~G~hlli~~~~~~~g~~~Y~~~~~~ 100 (936)
..++++. ++ +++.++.+|.|+++|.... ...+..+ ...+..+.+||.|. +++++. +++..+.++....
T Consensus 30 ~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~-~~~~~~~-----~~~~~~l~~~~dg~-l~v~~~--~~~~i~~~d~~~g 100 (296)
T 3e5z_A 30 TEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ-LSPEMHP-----SHHQNGHCLNKQGH-LIACSH--GLRRLERQREPGG 100 (296)
T ss_dssp EEEEEEEGGGTEEEEEEGGGTEEEEEETTSC-EEEEESS-----CSSEEEEEECTTCC-EEEEET--TTTEEEEECSTTC
T ss_pred ccCCeEeCCCCEEEEEeCCCCEEEEEECCCC-eEEEECC-----CCCcceeeECCCCc-EEEEec--CCCeEEEEcCCCC
Confidence 4566665 44 7899999999999999433 5555544 34678999999998 556554 1356666665444
Q ss_pred CceeccCC-C---CceEEEEEecCCCCCCCCcceEEE
Q 002318 101 KPRVLSKL-K---GLVVNAVAWNRQQITEASTKEIIL 133 (936)
Q Consensus 101 k~k~L~kl-k---g~~I~sVaw~~~~~~~~st~~iLi 133 (936)
+.+.+... . ...+..+++++ .|.+++
T Consensus 101 ~~~~~~~~~~~~~~~~~~~i~~d~-------~G~l~v 130 (296)
T 3e5z_A 101 EWESIADSFEGKKLNSPNDVCLAP-------DGSLWF 130 (296)
T ss_dssp CEEEEECEETTEECCCCCCEEECT-------TSCEEE
T ss_pred cEEEEeeccCCCCCCCCCCEEECC-------CCCEEE
Confidence 44443211 1 12345677773 246777
No 119
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=96.14 E-value=0.12 Score=57.02 Aligned_cols=153 Identities=8% Similarity=0.058 Sum_probs=92.8
Q ss_pred eeEEEEeC--CEEEEEec--CCeEEEEeC-CCCCceeeEcCCCCCCccceeEEEeCCCCCeEEEEeecCCCccEEEEecC
Q 002318 24 ITCMSAGN--DVIVLGTS--KGWLIRHDF-GAGDSYDIDLSAGRPGEQSIHKVFVDPGGSHCIATIVGSGGAETFYTHAK 98 (936)
Q Consensus 24 i~~l~v~~--n~l~l~~~--~g~l~ridl-~~~~~~~~~l~~~~~~~~~i~~i~lDp~G~hlli~~~~~~~g~~~Y~~~~ 98 (936)
+.+++.+. +.+++|.. .|+|..||+ ....+..++- ...|..+-+.|.|.+++.+++ ++...+....
T Consensus 136 ~~~v~fSpDg~~la~as~~~d~~i~iwd~~~~~~~~~~~~------~~~V~~v~fspdg~~l~s~s~---~~~~~~~~~~ 206 (365)
T 4h5i_A 136 TKLVYISREGTVAAIASSKVPAIMRIIDPSDLTEKFEIET------RGEVKDLHFSTDGKVVAYITG---SSLEVISTVT 206 (365)
T ss_dssp EEEEEECTTSSCEEEEESCSSCEEEEEETTTTEEEEEEEC------SSCCCEEEECTTSSEEEEECS---SCEEEEETTT
T ss_pred EEEEEEcCCCCEEEEEECCCCCEEEEeECCCCcEEEEeCC------CCceEEEEEccCCceEEeccc---eeEEEEEecc
Confidence 45566654 57788774 589999999 5554444431 246899999999999888876 5544444333
Q ss_pred CCC-ceeccCCCCceEEEEEecCCCCCCCCcceEEEEcCCC----cEEEEEEecCCcccceeeEEeeeCCCCCceeeEEE
Q 002318 99 WSK-PRVLSKLKGLVVNAVAWNRQQITEASTKEIILGTDTG----QLHEMAVDEKDKREKYIKLLFELNELPEAFMGLQM 173 (936)
Q Consensus 99 ~~k-~k~L~klkg~~I~sVaw~~~~~~~~st~~iLiGt~~G----~i~e~~i~~~~~~~~~~k~v~~l~~~~~~I~gi~~ 173 (936)
... .+......+..|.+|+|.++ ...++.|+.+| .+....+... .........+.+...+|+++.|
T Consensus 207 ~~~~~~~~~~~~~~~v~~v~fspd------g~~l~~~s~d~~~~~~i~~~~~~~~---~~~~~~~~~~~~~~~~V~~~~~ 277 (365)
T 4h5i_A 207 GSCIARKTDFDKNWSLSKINFIAD------DTVLIAASLKKGKGIVLTKISIKSG---NTSVLRSKQVTNRFKGITSMDV 277 (365)
T ss_dssp CCEEEEECCCCTTEEEEEEEEEET------TEEEEEEEESSSCCEEEEEEEEETT---EEEEEEEEEEESSCSCEEEEEE
T ss_pred CcceeeeecCCCCCCEEEEEEcCC------CCEEEEEecCCcceeEEeecccccc---eecceeeeeecCCCCCeEeEEE
Confidence 222 22233335678999999843 23566666554 2333333222 1112222344433467999988
Q ss_pred EeeccCCCceEEEEEECCCeEEEEec
Q 002318 174 ETASLSNGTRYYVMAVTPTRLYSFTG 199 (936)
Q Consensus 174 ~~~~~~~~~~~~i~ast~~rly~f~~ 199 (936)
. .+.++++.++....+.-|.-
T Consensus 278 S-----pdg~~lasgs~D~~V~iwd~ 298 (365)
T 4h5i_A 278 D-----MKGELAVLASNDNSIALVKL 298 (365)
T ss_dssp C-----TTSCEEEEEETTSCEEEEET
T ss_pred C-----CCCCceEEEcCCCEEEEEEC
Confidence 6 23468888887777777753
No 120
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=96.13 E-value=2.4 Score=51.79 Aligned_cols=283 Identities=14% Similarity=0.146 Sum_probs=151.4
Q ss_pred CCceeEEEEe-CCEEEEEecCCeEEEEeCCCCCceeeEcCCC----CCCccceeEEEeCCCCCeEEEEeecCCCccEEEE
Q 002318 21 RGVITCMSAG-NDVIVLGTSKGWLIRHDFGAGDSYDIDLSAG----RPGEQSIHKVFVDPGGSHCIATIVGSGGAETFYT 95 (936)
Q Consensus 21 ~~~i~~l~v~-~n~l~l~~~~g~l~ridl~~~~~~~~~l~~~----~~~~~~i~~i~lDp~G~hlli~~~~~~~g~~~Y~ 95 (936)
...|.+++.. ++.||+|+.+|-|.++|........+..+.. ......|..++.|+.|..+.|.|. ++-.+.+
T Consensus 356 ~~~V~~i~~d~~g~lWiGt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~~lWigt~---~~Gl~~~ 432 (795)
T 4a2l_A 356 DNVVSCIVEDKDKNLWIGTNDGGLNLYNPITQRFTSYTLQEDESARGIGSNNIKAVYVDEKKSLVYIGTH---AGGLSIL 432 (795)
T ss_dssp CSSEEEEEECTTSCEEEEESSSCEEEECTTTCCEEEECCC------CCSCSCEEEEEEETTTTEEEEEET---TTEEEEE
T ss_pred CCeeEEEEECCCCCEEEEECCCCeEEEcCCCCcEEEEecCCCCcccCCCCccEEEEEEcCCCCEEEEEeC---cCceeEE
Confidence 3468898876 5689999999889999985455555543210 112357999999999976788876 4556777
Q ss_pred ecCCCCceeccC----CCCceEEEEEecCCCCCCCCcceEEEEcCCCcEEEEEEecCCcccceeeEEeeeC---C-CCCc
Q 002318 96 HAKWSKPRVLSK----LKGLVVNAVAWNRQQITEASTKEIILGTDTGQLHEMAVDEKDKREKYIKLLFELN---E-LPEA 167 (936)
Q Consensus 96 ~~~~~k~k~L~k----lkg~~I~sVaw~~~~~~~~st~~iLiGt~~G~i~e~~i~~~~~~~~~~k~v~~l~---~-~~~~ 167 (936)
+....+.+.+.. +.+..|.+++.++ .+.+.+||.+| |+.+....+ .++...... . ....
T Consensus 433 d~~~~~~~~~~~~~~~l~~~~v~~i~~d~-------~g~lwigt~~G-l~~~~~~~~-----~~~~~~~~~~~~~~~~~~ 499 (795)
T 4a2l_A 433 HRNSGQVENFNQRNSQLVNENVYAILPDG-------EGNLWLGTLSA-LVRFNPEQR-----SFTTIEKEKDGTPVVSKQ 499 (795)
T ss_dssp ETTTCCEEEECTTTSCCSCSCEEEEEECS-------SSCEEEEESSC-EEEEETTTT-----EEEECCBCTTCCBCCCCC
T ss_pred eCCCCcEEEeecCCCCcCCCeeEEEEECC-------CCCEEEEecCc-eeEEeCCCC-----eEEEccccccccccCCce
Confidence 766555555432 3456799998872 35899999977 665543221 222221110 0 0134
Q ss_pred eeeEEEEeeccCCCceEEEEEECCCeEEEEecCCchHHHHhhhhcccccccccCCCcCCCcce-eeeccCCCceEEEe-e
Q 002318 168 FMGLQMETASLSNGTRYYVMAVTPTRLYSFTGFGSLDTVFASYLDRAVHFMELPGEILNSELH-FFIKQRRAVHFAWL-S 245 (936)
Q Consensus 168 I~gi~~~~~~~~~~~~~~i~ast~~rly~f~~~~~l~~~f~~~~~~~~~~~el~~~~~~s~~~-~~~~~~~~~~faW~-t 245 (936)
|.+|.... .+. +|+.|..-||.|..... .| .+.... .....+...+. .+. + +..-.|+ |
T Consensus 500 i~~i~~d~------~g~-lWigt~~Gl~~~~~~~~---~~-~~~~~~-----~~~~l~~~~i~~i~~--d-~~g~lWigT 560 (795)
T 4a2l_A 500 ITTLFRDS------HKR-LWIGGEEGLSVFKQEGL---DI-QKASIL-----PVSNVTKLFTNCIYE--A-SNGIIWVGT 560 (795)
T ss_dssp EEEEEECT------TCC-EEEEESSCEEEEEEETT---EE-EECCCS-----CSCGGGGSCEEEEEE--C-TTSCEEEEE
T ss_pred EEEEEECC------CCC-EEEEeCCceEEEeCCCC---eE-EEecCC-----CCCCCCCCeeEEEEE--C-CCCCEEEEe
Confidence 67765542 122 44455467887764221 01 110000 00001111111 111 1 2233564 3
Q ss_pred cCceEEEEeccCCCCCCCCCCCcccccccccccc---ccCCCCCCCCccccccC-CceEEEEECCEEEEEecCCCcEEEE
Q 002318 246 GAGIYHGGLNFGAQRSSPNGDENFVENKALLSYS---KLSEGAEAVKPGSMAVS-EYHFLLLMGNKVKVVNRISEQIIEE 321 (936)
Q Consensus 246 ~~gi~~g~i~~~~~~~~~~~~~~~~~~~~l~~~~---~l~~~~~~~~p~si~lT-~fHillL~~~~l~ivn~l~~~vv~~ 321 (936)
..|++. ++... . .+ ..|. .++. ..+.+++.. +-++.+-....|..++.-++++.
T Consensus 561 ~~Gl~~--~d~~~--------~-~~-----~~~~~~~gl~~----~~i~~i~~d~~g~lWi~t~~Gl~~~~~~~~~~~-- 618 (795)
T 4a2l_A 561 REGFYC--FNEKD--------K-QI-----KRYNTTNGLPN----NVVYGILEDSFGRLWLSTNRGISCFNPETEKFR-- 618 (795)
T ss_dssp SSCEEE--EETTT--------T-EE-----EEECGGGTCSC----SCEEEEEECTTSCEEEEETTEEEEEETTTTEEE--
T ss_pred CCCcee--ECCCC--------C-cE-----EEeCCCCCCch----hheEEEEECCCCCEEEEcCCceEEEcCCCCcEE--
Confidence 347766 33210 0 11 1121 1221 124455544 34555666788888888776643
Q ss_pred EEecCCCCCcccc--eeEEEeecCCCeEEEEeCCcEEEEEccc
Q 002318 322 LQFDQTSDSISRG--IIGLCSDATAGVFYAYDQNSIFQVSVND 362 (936)
Q Consensus 322 ~~~~~~~~~~~~~--~~gl~~D~~~~~~~i~S~~~i~~~~~~~ 362 (936)
.+....+-.... ..+++.| .++.+|+-+.+++..+.+..
T Consensus 619 -~~~~~dGl~~~~f~~~~~~~~-~~G~l~~g~~~Gl~~~~p~~ 659 (795)
T 4a2l_A 619 -NFTESDGLQSNQFNTASYCRT-SVGQMYFGGINGITTFRPEL 659 (795)
T ss_dssp -EECGGGTCSCSCEEEEEEEEC-TTSCEEEEETTEEEEECGGG
T ss_pred -EcCCcCCCccccCccCceeEC-CCCeEEEecCCceEEEcHHH
Confidence 232111100111 1355665 56789999999999988754
No 121
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=96.12 E-value=0.032 Score=72.09 Aligned_cols=149 Identities=7% Similarity=0.049 Sum_probs=105.6
Q ss_pred CceeEEEEeC--CEEEEEecCCeEEEEeC-CCCCceeeEcCCCCCCccceeEEEeCCCCCeEEEEeecCCCccEEEEecC
Q 002318 22 GVITCMSAGN--DVIVLGTSKGWLIRHDF-GAGDSYDIDLSAGRPGEQSIHKVFVDPGGSHCIATIVGSGGAETFYTHAK 98 (936)
Q Consensus 22 ~~i~~l~v~~--n~l~l~~~~g~l~ridl-~~~~~~~~~l~~~~~~~~~i~~i~lDp~G~hlli~~~~~~~g~~~Y~~~~ 98 (936)
..++|++++. +.++.|..+|.|..+|+ .+.....+.-+ ...|..+..+|.|.+++.++. +|....++..
T Consensus 962 ~~i~~~~~sp~g~~l~~g~~~g~i~i~d~~~~~~~~~~~~h-----~~~v~~l~~s~dg~~l~s~~~---dg~i~vwd~~ 1033 (1249)
T 3sfz_A 962 AQVSCCCLSPHLEYVAFGDEDGAIKIIELPNNRVFSSGVGH-----KKAVRHIQFTADGKTLISSSE---DSVIQVWNWQ 1033 (1249)
T ss_dssp SCEEEEEECTTSSEEEEEETTSCCEEEETTTTSCEEECCCC-----SSCCCCEEECSSSSCEEEECS---SSBEEEEETT
T ss_pred CcEEEEEEcCCCCEEEEEcCCCCEEEEEcCCCceeeecccC-----CCceEEEEECCCCCEEEEEcC---CCEEEEEECC
Confidence 3577777765 48999999999999999 55444333322 467899999999999999888 8999888876
Q ss_pred CCCceeccCCCCceEEEEEecCCCCCCCCcceEEEEcCCCcEEEEEEecCCcccceeeEEeeeCCCCCceeeEEEEeecc
Q 002318 99 WSKPRVLSKLKGLVVNAVAWNRQQITEASTKEIILGTDTGQLHEMAVDEKDKREKYIKLLFELNELPEAFMGLQMETASL 178 (936)
Q Consensus 99 ~~k~k~L~klkg~~I~sVaw~~~~~~~~st~~iLiGt~~G~i~e~~i~~~~~~~~~~k~v~~l~~~~~~I~gi~~~~~~~ 178 (936)
..+...+.. ....|.+++|.+ .+.++.|+.+|.|....+..+. ..+. +... .++|+++.|..
T Consensus 1034 ~~~~~~~~~-~~~~v~~~~~~~-------~~~l~~~~~dg~v~vwd~~~~~----~~~~-~~~~--~~~v~~~~~s~--- 1095 (1249)
T 3sfz_A 1034 TGDYVFLQA-HQETVKDFRLLQ-------DSRLLSWSFDGTVKVWNVITGR----IERD-FTCH--QGTVLSCAISS--- 1095 (1249)
T ss_dssp TTEEECCBC-CSSCEEEEEECS-------SSEEEEEESSSEEEEEETTTTC----CCEE-EECC--SSCCCCEEECS---
T ss_pred CCceEEEec-CCCcEEEEEEcC-------CCcEEEEECCCcEEEEECCCCc----eeEE-Eccc--CCcEEEEEECC---
Confidence 655444432 346899999984 2379999999998887765431 1222 2333 36799999873
Q ss_pred CCCceEEEEEECCCeEEEEe
Q 002318 179 SNGTRYYVMAVTPTRLYSFT 198 (936)
Q Consensus 179 ~~~~~~~i~ast~~rly~f~ 198 (936)
+.++++.++....++-|.
T Consensus 1096 --d~~~l~s~s~d~~v~iwd 1113 (1249)
T 3sfz_A 1096 --DATKFSSTSADKTAKIWS 1113 (1249)
T ss_dssp --SSSSCEEECCSSCCCEEC
T ss_pred --CCCEEEEEcCCCcEEEEE
Confidence 235666666666666664
No 122
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=96.12 E-value=0.066 Score=58.17 Aligned_cols=152 Identities=9% Similarity=0.038 Sum_probs=95.3
Q ss_pred ceeEEEEeCCEEEEEecCCeEEEEeCC---------CCC-ceeeEcCCCCCCccceeEEEeCC--CCCeEEEEeecCCCc
Q 002318 23 VITCMSAGNDVIVLGTSKGWLIRHDFG---------AGD-SYDIDLSAGRPGEQSIHKVFVDP--GGSHCIATIVGSGGA 90 (936)
Q Consensus 23 ~i~~l~v~~n~l~l~~~~g~l~ridl~---------~~~-~~~~~l~~~~~~~~~i~~i~lDp--~G~hlli~~~~~~~g 90 (936)
.+.+++.++. ++-|..+|+|..+|.. ... +..+..+ ....|..+-.+| .|.+++.++. +|
T Consensus 78 ~v~~~~~~~~-~~s~s~D~~i~~w~~~~~~~~~~~~~~~~~~~~~~~----~~~~v~~~~~~~~~~~~~l~s~s~---dg 149 (343)
T 3lrv_A 78 NPRTGGEHPA-IISRGPCNRLLLLYPGNQITILDSKTNKVLREIEVD----SANEIIYMYGHNEVNTEYFIWADN---RG 149 (343)
T ss_dssp CCCTTCCCCS-EEEECSTTEEEEEETTTEEEEEETTTCCEEEEEECC----CSSCEEEEECCC---CCEEEEEET---TC
T ss_pred CceeeeeCCc-eEEecCCCeEEEEEccCceEEeecCCcceeEEeecC----CCCCEEEEEcCCCCCCCEEEEEeC---CC
Confidence 3555556666 5666677777777662 111 2223222 135799999999 9999988887 89
Q ss_pred cEEEEecCCCCceecc-CCCCceEEEEEecCCCCCCCCcceEEEEcCCCcEEEEEEecCCcccceeeEEeeeCCCCCcee
Q 002318 91 ETFYTHAKWSKPRVLS-KLKGLVVNAVAWNRQQITEASTKEIILGTDTGQLHEMAVDEKDKREKYIKLLFELNELPEAFM 169 (936)
Q Consensus 91 ~~~Y~~~~~~k~k~L~-klkg~~I~sVaw~~~~~~~~st~~iLiGt~~G~i~e~~i~~~~~~~~~~k~v~~l~~~~~~I~ 169 (936)
....+.....+...+. .-.+..|.+++|+++ ..-+..|+.+|.|....+.... .....+... -.++|+
T Consensus 150 ~i~~wd~~~~~~~~~~~~~~~~~i~~~~~~pd------g~~lasg~~dg~i~iwd~~~~~----~~~~~~~~~-h~~~v~ 218 (343)
T 3lrv_A 150 TIGFQSYEDDSQYIVHSAKSDVEYSSGVLHKD------SLLLALYSPDGILDVYNLSSPD----QASSRFPVD-EEAKIK 218 (343)
T ss_dssp CEEEEESSSSCEEEEECCCSSCCCCEEEECTT------SCEEEEECTTSCEEEEESSCTT----SCCEECCCC-TTSCEE
T ss_pred cEEEEECCCCcEEEEEecCCCCceEEEEECCC------CCEEEEEcCCCEEEEEECCCCC----CCccEEecc-CCCCEE
Confidence 9988887665543322 223346999999943 2356678999999888775431 111122331 136899
Q ss_pred eEEEEeeccCCCceEEEEEECCCeEEEEec
Q 002318 170 GLQMETASLSNGTRYYVMAVTPTRLYSFTG 199 (936)
Q Consensus 170 gi~~~~~~~~~~~~~~i~ast~~rly~f~~ 199 (936)
++.|.. +.++++.++.. .+.-|.-
T Consensus 219 ~l~fs~-----~g~~l~s~~~~-~v~iwd~ 242 (343)
T 3lrv_A 219 EVKFAD-----NGYWMVVECDQ-TVVCFDL 242 (343)
T ss_dssp EEEECT-----TSSEEEEEESS-BEEEEET
T ss_pred EEEEeC-----CCCEEEEEeCC-eEEEEEc
Confidence 999963 23566666644 7777753
No 123
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=96.10 E-value=0.25 Score=58.53 Aligned_cols=155 Identities=12% Similarity=0.116 Sum_probs=99.8
Q ss_pred CCceeEEEEeCC--EEEEEecCCeEEEEeC-CCCCceeeEcCCCCCCccceeEEEeCCCCCeEEEEeecC-CCccEEEEe
Q 002318 21 RGVITCMSAGND--VIVLGTSKGWLIRHDF-GAGDSYDIDLSAGRPGEQSIHKVFVDPGGSHCIATIVGS-GGAETFYTH 96 (936)
Q Consensus 21 ~~~i~~l~v~~n--~l~l~~~~g~l~ridl-~~~~~~~~~l~~~~~~~~~i~~i~lDp~G~hlli~~~~~-~~g~~~Y~~ 96 (936)
.+.|++++.+.+ .|+-|..+|+|..||+ .+.......++. -...|..+-.+|.|.+++++.... ..|..+-+.
T Consensus 59 ~~~v~~~~~spdg~~lasg~~d~~v~lWd~~~~~~~~~~~~~~---~~~~v~~v~fs~dg~~l~~~~~~~~~~~~v~~wd 135 (611)
T 1nr0_A 59 SHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILKTTIPV---FSGPVKDISWDSESKRIAAVGEGRERFGHVFLFD 135 (611)
T ss_dssp SSCEEEEEECTTSSEEEEEETTSEEEEEESSSTTCCEEEEEEC---SSSCEEEEEECTTSCEEEEEECCSSCSEEEEETT
T ss_pred CCceEEEEECCCCcEEEEEeCCCCEEEeECCCCcceeeEeecc---cCCceEEEEECCCCCEEEEEECCCCceeEEEEee
Confidence 456999999864 7888889999999999 544433222321 136899999999999988776510 012344333
Q ss_pred cCCCCceeccCCCC--ceEEEEEecCCCCCCCCcceEEEEcCCCcEEEEEEecCCcccceeeEEeeeCCCCCceeeEEEE
Q 002318 97 AKWSKPRVLSKLKG--LVVNAVAWNRQQITEASTKEIILGTDTGQLHEMAVDEKDKREKYIKLLFELNELPEAFMGLQME 174 (936)
Q Consensus 97 ~~~~k~k~L~klkg--~~I~sVaw~~~~~~~~st~~iLiGt~~G~i~e~~i~~~~~~~~~~k~v~~l~~~~~~I~gi~~~ 174 (936)
.. ..+..++| ..|.+|+|++.. ...++.|+.+|.|....... .+.+..+.+-..+|.++.|.
T Consensus 136 ~~----~~~~~l~gh~~~v~~v~f~p~~-----~~~l~s~s~D~~v~lwd~~~-------~~~~~~l~~H~~~V~~v~fs 199 (611)
T 1nr0_A 136 TG----TSNGNLTGQARAMNSVDFKPSR-----PFRIISGSDDNTVAIFEGPP-------FKFKSTFGEHTKFVHSVRYN 199 (611)
T ss_dssp TC----CBCBCCCCCSSCEEEEEECSSS-----SCEEEEEETTSCEEEEETTT-------BEEEEEECCCSSCEEEEEEC
T ss_pred CC----CCcceecCCCCCceEEEECCCC-----CeEEEEEeCCCeEEEEECCC-------CeEeeeeccccCceEEEEEC
Confidence 21 12233344 479999999531 12588899999988765432 12233444334679999986
Q ss_pred eeccCCCceEEEEEECCCeEEEEec
Q 002318 175 TASLSNGTRYYVMAVTPTRLYSFTG 199 (936)
Q Consensus 175 ~~~~~~~~~~~i~ast~~rly~f~~ 199 (936)
. +.+.++-++....+.-|..
T Consensus 200 p-----dg~~las~s~D~~i~lwd~ 219 (611)
T 1nr0_A 200 P-----DGSLFASTGGDGTIVLYNG 219 (611)
T ss_dssp T-----TSSEEEEEETTSCEEEEET
T ss_pred C-----CCCEEEEEECCCcEEEEEC
Confidence 3 2357777777777777763
No 124
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=96.06 E-value=0.12 Score=56.06 Aligned_cols=111 Identities=5% Similarity=-0.037 Sum_probs=75.9
Q ss_pred CceeEEEEeC----CEEEEEecCCeEEEEeC-CCCCceeeEcCCCCCCccceeEEEeCCCCCeEEEEeecCCCccEEEEe
Q 002318 22 GVITCMSAGN----DVIVLGTSKGWLIRHDF-GAGDSYDIDLSAGRPGEQSIHKVFVDPGGSHCIATIVGSGGAETFYTH 96 (936)
Q Consensus 22 ~~i~~l~v~~----n~l~l~~~~g~l~ridl-~~~~~~~~~l~~~~~~~~~i~~i~lDp~G~hlli~~~~~~~g~~~Y~~ 96 (936)
+.|.+++.+. +.++.|..+|+|..+|+ .+..+.....+ ....|..+.++|.|..+++++. +|....++
T Consensus 126 ~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~----~~~~i~~~~~~pdg~~lasg~~---dg~i~iwd 198 (343)
T 3lrv_A 126 NEIIYMYGHNEVNTEYFIWADNRGTIGFQSYEDDSQYIVHSAK----SDVEYSSGVLHKDSLLLALYSP---DGILDVYN 198 (343)
T ss_dssp SCEEEEECCC---CCEEEEEETTCCEEEEESSSSCEEEEECCC----SSCCCCEEEECTTSCEEEEECT---TSCEEEEE
T ss_pred CCEEEEEcCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEEecC----CCCceEEEEECCCCCEEEEEcC---CCEEEEEE
Confidence 5699999865 67888999999999999 44332211122 1346899999999998888777 89998888
Q ss_pred cCCCCc--eeccCCCCceEEEEEecCCCCCCCCcceEEEEcCCCcEEEEEEe
Q 002318 97 AKWSKP--RVLSKLKGLVVNAVAWNRQQITEASTKEIILGTDTGQLHEMAVD 146 (936)
Q Consensus 97 ~~~~k~--k~L~klkg~~I~sVaw~~~~~~~~st~~iLiGt~~G~i~e~~i~ 146 (936)
....+. ..+..-....|++|+|++. ...++.|+ ++.|....+.
T Consensus 199 ~~~~~~~~~~~~~~h~~~v~~l~fs~~------g~~l~s~~-~~~v~iwd~~ 243 (343)
T 3lrv_A 199 LSSPDQASSRFPVDEEAKIKEVKFADN------GYWMVVEC-DQTVVCFDLR 243 (343)
T ss_dssp SSCTTSCCEECCCCTTSCEEEEEECTT------SSEEEEEE-SSBEEEEETT
T ss_pred CCCCCCCccEEeccCCCCEEEEEEeCC------CCEEEEEe-CCeEEEEEcC
Confidence 766543 2343212468999999942 12455555 6666666554
No 125
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=96.05 E-value=0.0013 Score=53.87 Aligned_cols=37 Identities=27% Similarity=0.508 Sum_probs=29.9
Q ss_pred cccccccccchhhhhcccccccccccCCCCCCCCEEEEcCCChhHHHhHHHHHhh
Q 002318 831 DRDEDCGVCRRKILVAGRDYRMARGYASVGPMAPFYVFPCGHAFHAQCLIAHVTQ 885 (936)
Q Consensus 831 ~~~~~C~~C~k~L~~~~~~~~~~~~~~~~~~~~~fvvFpCgH~fH~~CL~~~~~~ 885 (936)
+.+..|.+|...+.. +.++.||||.||..|+.+....
T Consensus 3 ~~~~~C~IC~~~~~~------------------~~~~~~C~H~fc~~Ci~~~~~~ 39 (68)
T 1chc_A 3 TVAERCPICLEDPSN------------------YSMALPCLHAFCYVCITRWIRQ 39 (68)
T ss_dssp CCCCCCSSCCSCCCS------------------CEEETTTTEEESTTHHHHHHHH
T ss_pred CCCCCCeeCCccccC------------------CcEecCCCCeeHHHHHHHHHhC
Confidence 346789999887654 6688899999999999987643
No 126
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=96.04 E-value=0.35 Score=53.04 Aligned_cols=292 Identities=7% Similarity=-0.020 Sum_probs=153.2
Q ss_pred HHHHchhhHHHHHHhcCCh----hhHHHHHHHHHHHHHhcCCHHHHHHHHHHhc--CCC---ChHHHHHHhcCcChHHHH
Q 002318 369 KVYLDMKEYAAALANCRDP----LQRDQVYLVQAEAAFATKDFHRAASFYAKIN--YIL---SFEEITLKFISVSEQDAL 439 (936)
Q Consensus 369 ~~ll~~~~f~~Al~~~~~~----~~~~~I~~~~~~~L~~~g~y~~Aa~~y~~~~--~~~---~~E~v~lkFl~~~~~~~L 439 (936)
.+++..|++++|..+.+.. ..........|..++..|+|++|...|.+.. +.. .|-....-+...++.+.-
T Consensus 41 ~~~~~~~~~~~a~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A 120 (388)
T 1w3b_A 41 SIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGA 120 (388)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHH
T ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHcCCHHHH
Confidence 3467789999999886531 1234577788899999999999999998865 111 122222233333433222
Q ss_pred HHHHHHHhhcccCchhHHHHHHHHHHHHHHHHHHhhhhcccchhhccchHHHHHHHHHHHHHHhcccccCCHH---HHHH
Q 002318 440 RTFLLRKLDNLAKDDKCQITMISTWATELYLDKINRLLLEDDTALENRSSEYQSIMREFRAFLSDCKDVLDEA---TTMK 516 (936)
Q Consensus 440 ~~YL~~~l~~l~~~~~~~~~lL~~Wl~ely~~~l~~~~~e~~~~~~~~~~~~~~~~~~l~~fl~~~~~~ld~~---tv~~ 516 (936)
..++..-+..-+...... ..+..+|.. .. .+.+....+++.+....+ +.. ..-.
T Consensus 121 ~~~~~~al~~~p~~~~~~-----~~l~~~~~~-~g---------------~~~~A~~~~~~al~~~p~--~~~~~~~l~~ 177 (388)
T 1w3b_A 121 VQAYVSALQYNPDLYCVR-----SDLGNLLKA-LG---------------RLEEAKACYLKAIETQPN--FAVAWSNLGC 177 (388)
T ss_dssp HHHHHHHHHHCTTCTHHH-----HHHHHHHHT-TS---------------CHHHHHHHHHHHHHHCTT--CHHHHHHHHH
T ss_pred HHHHHHHHHhCCCcHHHH-----HHHHHHHHH-cc---------------CHHHHHHHHHHHHHhCCC--CHHHHHHHHH
Confidence 222222222211111110 111122210 01 111222333333332111 111 1223
Q ss_pred HHHHcCChhHHHHHHHhh--------hhHHHHHHHHHhcccHHHHHHHHhCC----CCchhhHHhhHHHHH-hHChHHHH
Q 002318 517 LLESYGRVEELVFFASLK--------EQHEIVVHHYIQQGEAKKALQMLRKP----AVPIDLQYKFAPDLI-MLDAYETV 583 (936)
Q Consensus 517 ll~~~g~~e~~l~~a~~~--------~dy~~ll~~yi~~~~~~~AL~~L~~~----~d~~~li~k~~~~Ll-~~~p~~ti 583 (936)
++...|+.++++.+.+.. .-|..+...|...+++++|+..+.+. ++........+..+. ....++++
T Consensus 178 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~ 257 (388)
T 1w3b_A 178 VFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAI 257 (388)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCCHHHHHHHHHHHHHcCCHHHHH
Confidence 455677777777666543 22445556777888888888876532 222333444444443 34566677
Q ss_pred HHHHccCCCCCCcch------hHhhhcCCCCCCCCChHHHHHHHHHHHhhcCCCCHhHHHHHHHHhhcCCChHHHHHHHH
Q 002318 584 ESWMTTNNLNPRKLI------PAMMRYSSEPHAKNETHEVIKYLEFCVHRLHNEDPGVHNLLLSLYAKQEDDSALLRFLQ 657 (936)
Q Consensus 584 ~ll~~~~~ld~~~li------~~L~~~~~~~~~~~~~~~~~~YLe~li~~~~~~~~~~hn~ll~Ly~~~~~~~~Ll~fL~ 657 (936)
+.+.+...++|...- ..+..- .....++.+++..+...+ .+...++.+..+|.+.++.++-+.+++
T Consensus 258 ~~~~~al~~~p~~~~~~~~l~~~~~~~-------g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~ 329 (388)
T 1w3b_A 258 DTYRRAIELQPHFPDAYCNLANALKEK-------GSVAEAEDCYNTALRLCP-THADSLNNLANIKREQGNIEEAVRLYR 329 (388)
T ss_dssp HHHHHHHHTCSSCHHHHHHHHHHHHHH-------SCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred HHHHHHHhhCCCCHHHHHHHHHHHHHc-------CCHHHHHHHHHHHHhhCc-ccHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 766443234443211 111111 134668888888876654 456778888888888766677777777
Q ss_pred HhhCCCCCCCCcccCChHHHHHHHHhcCcceeeehhhhccccHHHHHHHHH
Q 002318 658 CKFGKGRENGPEFFYDPKYALRLCLKEKRMRACVHIYGMMSMHEEAVALAL 708 (936)
Q Consensus 658 ~~~~~~~~~~~~~~yd~~~aLrlc~~~~~~~~~v~L~~~~g~~~eAl~l~l 708 (936)
..- ..+++.+- .+.....+|.++|++++|+..+-
T Consensus 330 ~al----------~~~p~~~~-------~~~~l~~~~~~~g~~~~A~~~~~ 363 (388)
T 1w3b_A 330 KAL----------EVFPEFAA-------AHSNLASVLQQQGKLQEALMHYK 363 (388)
T ss_dssp HHT----------TSCTTCHH-------HHHHHHHHHHTTTCCHHHHHHHH
T ss_pred HHH----------hcCCCcHH-------HHHHHHHHHHHcCCHHHHHHHHH
Confidence 751 11111111 01123456788999999988654
No 127
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=96.02 E-value=0.49 Score=52.80 Aligned_cols=275 Identities=13% Similarity=0.077 Sum_probs=143.1
Q ss_pred HHHHchhhHHHHHHhcCCh----hhHHHHHHHHHHHHHhcCCHHHHHHHHHHhc--CCC---ChHHHHHHhcCcChHHHH
Q 002318 369 KVYLDMKEYAAALANCRDP----LQRDQVYLVQAEAAFATKDFHRAASFYAKIN--YIL---SFEEITLKFISVSEQDAL 439 (936)
Q Consensus 369 ~~ll~~~~f~~Al~~~~~~----~~~~~I~~~~~~~L~~~g~y~~Aa~~y~~~~--~~~---~~E~v~lkFl~~~~~~~L 439 (936)
..++..|+|++|+.+.+.. ..-..+....|..++..|+|++|...|.+.. +.. .+-.....+...++.+.-
T Consensus 34 ~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A 113 (450)
T 2y4t_A 34 KKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQRGHLLLKQGKLDEA 113 (450)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHH
Confidence 3467889999999987531 1225677788999999999999999998865 111 122233334455666555
Q ss_pred HHHHHHHhhcccCch---hHHHHHHHHHHHHHHHHHHhhhhcccchhhccchHHHHHHHHHHHHHHhcccccCCHH---H
Q 002318 440 RTFLLRKLDNLAKDD---KCQITMISTWATELYLDKINRLLLEDDTALENRSSEYQSIMREFRAFLSDCKDVLDEA---T 513 (936)
Q Consensus 440 ~~YL~~~l~~l~~~~---~~~~~lL~~Wl~ely~~~l~~~~~e~~~~~~~~~~~~~~~~~~l~~fl~~~~~~ld~~---t 513 (936)
..++..-+..-+.+. .....+.......-+...-.... . ...+.+....+++.+..... +.. .
T Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~-~--------~~~~~~A~~~~~~~~~~~~~--~~~~~~~ 182 (450)
T 2y4t_A 114 EDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALNAF-G--------SGDYTAAIAFLDKILEVCVW--DAELREL 182 (450)
T ss_dssp HHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-H--------HTCHHHHHHHHHHHHHHCTT--CHHHHHH
T ss_pred HHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHHHHHHHHHH-H--------cCCHHHHHHHHHHHHHhCCC--ChHHHHH
Confidence 555555444333222 12111111100000000000000 0 01122223334444432211 222 2
Q ss_pred HHHHHHHcCChhHHHHHHHhh--------hhHHHHHHHHHhcccHHHHHHHHhCC----CCchhhHHhh-----------
Q 002318 514 TMKLLESYGRVEELVFFASLK--------EQHEIVVHHYIQQGEAKKALQMLRKP----AVPIDLQYKF----------- 570 (936)
Q Consensus 514 v~~ll~~~g~~e~~l~~a~~~--------~dy~~ll~~yi~~~~~~~AL~~L~~~----~d~~~li~k~----------- 570 (936)
...++...|+.++++...+.. .-+..+...|...|++++|++.+.+. ++.......+
T Consensus 183 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~ 262 (450)
T 2y4t_A 183 RAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIE 262 (450)
T ss_dssp HHHHHHHTTCGGGGHHHHHHHHHHHCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHH
Confidence 334566788888887776653 22455667888999999999988653 2222222211
Q ss_pred -HHHHH-hHChHHHHHHHHccCCCCCCc------chhHhh-hcCCCCCCCCChHHHHHHHHHHHhhcCCCCHhHHHHHHH
Q 002318 571 -APDLI-MLDAYETVESWMTTNNLNPRK------LIPAMM-RYSSEPHAKNETHEVIKYLEFCVHRLHNEDPGVHNLLLS 641 (936)
Q Consensus 571 -~~~Ll-~~~p~~ti~ll~~~~~ld~~~------li~~L~-~~~~~~~~~~~~~~~~~YLe~li~~~~~~~~~~hn~ll~ 641 (936)
+..++ ....++++..+.+...++|.. +.-.+. -+.. ......++.+++..+...+ .+...+..+..
T Consensus 263 ~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~a~~~~p-~~~~~~~~l~~ 337 (450)
T 2y4t_A 263 SAEELIRDGRYTDATSKYESVMKTEPSIAEYTVRSKERICHCFSK----DEKPVEAIRVCSEVLQMEP-DNVNALKDRAE 337 (450)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHT----TTCHHHHHHHHHHHHHHCT-TCHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHH----CCCHHHHHHHHHHHHHhCc-ccHHHHHHHHH
Confidence 33332 245566666664332233331 100010 0100 1235668888888776544 34667777777
Q ss_pred HhhcCCChHHHHHHHHHh
Q 002318 642 LYAKQEDDSALLRFLQCK 659 (936)
Q Consensus 642 Ly~~~~~~~~Ll~fL~~~ 659 (936)
.|...++.++-..+++..
T Consensus 338 ~~~~~~~~~~A~~~~~~a 355 (450)
T 2y4t_A 338 AYLIEEMYDEAIQDYETA 355 (450)
T ss_dssp HHHHTTCHHHHHHHHHHH
T ss_pred HHHHhcCHHHHHHHHHHH
Confidence 777766566666666664
No 128
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=96.02 E-value=0.0025 Score=52.38 Aligned_cols=39 Identities=26% Similarity=0.581 Sum_probs=30.6
Q ss_pred cccccccccchhhhhcccccccccccCCCCCCCCEEEEcCCChhHHHhHHHHHhh
Q 002318 831 DRDEDCGVCRRKILVAGRDYRMARGYASVGPMAPFYVFPCGHAFHAQCLIAHVTQ 885 (936)
Q Consensus 831 ~~~~~C~~C~k~L~~~~~~~~~~~~~~~~~~~~~fvvFpCgH~fH~~CL~~~~~~ 885 (936)
.....|.+|...+.. . ...++.||||.||..|+...+..
T Consensus 12 ~~~~~C~IC~~~~~~-----~-----------~~~~~~~C~H~fc~~Ci~~~~~~ 50 (69)
T 2kiz_A 12 DTEEKCTICLSILEE-----G-----------EDVRRLPCMHLFHQVCVDQWLIT 50 (69)
T ss_dssp TCCCSBTTTTBCCCS-----S-----------SCEEECTTSCEEEHHHHHHHHHH
T ss_pred CCCCCCeeCCccccC-----C-----------CcEEEeCCCCHHHHHHHHHHHHc
Confidence 345689999987754 1 16778899999999999987654
No 129
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=96.00 E-value=0.14 Score=63.92 Aligned_cols=154 Identities=10% Similarity=0.100 Sum_probs=101.4
Q ss_pred CCceeEEEEeC--CEEEEEecCCeEEEEeCCCCCceeeEcCCCCCCccceeEEEeCCCCCeEEEEeecCCCccEEEEecC
Q 002318 21 RGVITCMSAGN--DVIVLGTSKGWLIRHDFGAGDSYDIDLSAGRPGEQSIHKVFVDPGGSHCIATIVGSGGAETFYTHAK 98 (936)
Q Consensus 21 ~~~i~~l~v~~--n~l~l~~~~g~l~ridl~~~~~~~~~l~~~~~~~~~i~~i~lDp~G~hlli~~~~~~~g~~~Y~~~~ 98 (936)
++.|+|++.+. +.|+.|..+|+|..||....+. ...++ ....|..+-..| |.+++.++. +|....++..
T Consensus 17 ~~~V~~lafspdg~~lAsgs~Dg~I~lw~~~~~~~-~~~~~----~~~~V~~l~fsp-g~~L~S~s~---D~~v~lWd~~ 87 (902)
T 2oaj_A 17 SSKPIAAAFDFTQNLLAIATVTGEVHIYGQQQVEV-VIKLE----DRSAIKEMRFVK-GIYLVVINA---KDTVYVLSLY 87 (902)
T ss_dssp SSCEEEEEEETTTTEEEEEETTSEEEEECSTTCEE-EEECS----SCCCEEEEEEET-TTEEEEEET---TCEEEEEETT
T ss_pred CCCcEEEEECCCCCEEEEEeCCCEEEEEeCCCcEE-EEEcC----CCCCEEEEEEcC-CCEEEEEEC---cCeEEEEECC
Confidence 45799999986 4899999999999999832221 12222 146899999999 887777776 8998888876
Q ss_pred CCCc-eeccCCCCceEEEEEecCCCCCCCCcceEEEEcCCCcEEEEEEecCCcccceeeE--E----eeeCCCCCceeeE
Q 002318 99 WSKP-RVLSKLKGLVVNAVAWNRQQITEASTKEIILGTDTGQLHEMAVDEKDKREKYIKL--L----FELNELPEAFMGL 171 (936)
Q Consensus 99 ~~k~-k~L~klkg~~I~sVaw~~~~~~~~st~~iLiGt~~G~i~e~~i~~~~~~~~~~k~--v----~~l~~~~~~I~gi 171 (936)
..+. +.+. . ...|++|+|++. ...+++|+.+|.|....+..... ..++. + ..+..-.++|++|
T Consensus 88 ~~~~~~~~~-~-~~~V~~v~~sp~------g~~l~sgs~dg~V~lwd~~~~~~--~~~~i~~~~~~~~~~~~h~~~V~sl 157 (902)
T 2oaj_A 88 SQKVLTTVF-V-PGKITSIDTDAS------LDWMLIGLQNGSMIVYDIDRDQL--SSFKLDNLQKSSFFPAARLSPIVSI 157 (902)
T ss_dssp TCSEEEEEE-C-SSCEEEEECCTT------CSEEEEEETTSCEEEEETTTTEE--EEEEECCHHHHHTCSSSCCCCCCEE
T ss_pred CCcEEEEEc-C-CCCEEEEEECCC------CCEEEEEcCCCcEEEEECCCCcc--ccceeccccccccccccCCCCeEEE
Confidence 5442 2332 2 247999999943 24789999999998877654310 00000 0 1122224679999
Q ss_pred EEEeeccCCCceEEEEEECCCeEEEEe
Q 002318 172 QMETASLSNGTRYYVMAVTPTRLYSFT 198 (936)
Q Consensus 172 ~~~~~~~~~~~~~~i~ast~~rly~f~ 198 (936)
.|.. .+.+.++.++....+ -|.
T Consensus 158 ~~sp----~~~~~l~~g~~dg~v-lWd 179 (902)
T 2oaj_A 158 QWNP----RDIGTVLISYEYVTL-TYS 179 (902)
T ss_dssp EEET----TEEEEEEEECSSCEE-EEE
T ss_pred EEcc----CCCCEEEEEeCCCcE-EEE
Confidence 9973 223456665556666 675
No 130
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=95.96 E-value=0.35 Score=52.80 Aligned_cols=106 Identities=12% Similarity=0.114 Sum_probs=71.0
Q ss_pred EeCCEEEE--EecCCeEEEEeC-CCCC----------------ceeeEcCCCCCCccceeEEEeCCCCCeEEEEeecCCC
Q 002318 29 AGNDVIVL--GTSKGWLIRHDF-GAGD----------------SYDIDLSAGRPGEQSIHKVFVDPGGSHCIATIVGSGG 89 (936)
Q Consensus 29 v~~n~l~l--~~~~g~l~ridl-~~~~----------------~~~~~l~~~~~~~~~i~~i~lDp~G~hlli~~~~~~~ 89 (936)
++.+.+++ |..+|.|..+|+ .+.. +..+.-+ ...|..+-++|.|.+++.++. +
T Consensus 145 ~s~~~la~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h-----~~~v~~~~~s~~g~~l~s~s~---d 216 (355)
T 3vu4_A 145 FSNGLLVYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAH-----TNPIKMVRLNRKSDMVATCSQ---D 216 (355)
T ss_dssp EETTEEEEEESSCTTCEEEEECCC------------------CCEEECCC-----SSCEEEEEECTTSSEEEEEET---T
T ss_pred EEccEEEEeCCCcCcEEEEEECCCCCccccccccccccccCcccEEEEcc-----CCceEEEEECCCCCEEEEEeC---C
Confidence 33366666 467788888888 3221 2222222 468999999999999999888 8
Q ss_pred cc-EEEEecCCCC-ceeccCC-CCceEEEEEecCCCCCCCCcceEEEEcCCCcEEEEEEecC
Q 002318 90 AE-TFYTHAKWSK-PRVLSKL-KGLVVNAVAWNRQQITEASTKEIILGTDTGQLHEMAVDEK 148 (936)
Q Consensus 90 g~-~~Y~~~~~~k-~k~L~kl-kg~~I~sVaw~~~~~~~~st~~iLiGt~~G~i~e~~i~~~ 148 (936)
|. ...++....+ .+.+..- ....|.+++|+++ ...++.|+.+|.|....+...
T Consensus 217 ~~~v~iwd~~~~~~~~~~~~g~h~~~v~~~~~s~~------~~~l~s~s~d~~v~iw~~~~~ 272 (355)
T 3vu4_A 217 GTIIRVFKTEDGVLVREFRRGLDRADVVDMKWSTD------GSKLAVVSDKWTLHVFEIFND 272 (355)
T ss_dssp CSEEEEEETTTCCEEEEEECTTCCSCEEEEEECTT------SCEEEEEETTCEEEEEESSCC
T ss_pred CCEEEEEECCCCcEEEEEEcCCCCCcEEEEEECCC------CCEEEEEECCCEEEEEEccCC
Confidence 97 8777765543 3334311 3458999999953 236888899999988877543
No 131
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=95.95 E-value=0.0026 Score=53.04 Aligned_cols=40 Identities=35% Similarity=0.737 Sum_probs=31.6
Q ss_pred ecccccccccchhhhhcccccccccccCCCCCCCCEEEEcCCChhHHHhHHHHHhh
Q 002318 830 IDRDEDCGVCRRKILVAGRDYRMARGYASVGPMAPFYVFPCGHAFHAQCLIAHVTQ 885 (936)
Q Consensus 830 i~~~~~C~~C~k~L~~~~~~~~~~~~~~~~~~~~~fvvFpCgH~fH~~CL~~~~~~ 885 (936)
+.....|.+|...+.. . ..+++.||||.||..|+...+..
T Consensus 12 ~~~~~~C~IC~~~~~~-----~-----------~~~~~~~C~H~f~~~Ci~~~~~~ 51 (74)
T 2ep4_A 12 LNLHELCAVCLEDFKP-----R-----------DELGICPCKHAFHRKCLIKWLEV 51 (74)
T ss_dssp CCCSCBCSSSCCBCCS-----S-----------SCEEEETTTEEEEHHHHHHHHHH
T ss_pred CCCCCCCcCCCcccCC-----C-----------CcEEEcCCCCEecHHHHHHHHHc
Confidence 4456789999988765 1 15777899999999999987754
No 132
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=95.94 E-value=0.34 Score=53.08 Aligned_cols=150 Identities=8% Similarity=0.004 Sum_probs=94.4
Q ss_pred CceeEEEEe--CCEEEEEe-cCCeEEEEeC-CCCCceeeEcCCCCCCccceeEEEeCCCCCeEEEEeecCCCccEEEEec
Q 002318 22 GVITCMSAG--NDVIVLGT-SKGWLIRHDF-GAGDSYDIDLSAGRPGEQSIHKVFVDPGGSHCIATIVGSGGAETFYTHA 97 (936)
Q Consensus 22 ~~i~~l~v~--~n~l~l~~-~~g~l~ridl-~~~~~~~~~l~~~~~~~~~i~~i~lDp~G~hlli~~~~~~~g~~~Y~~~ 97 (936)
..+.+++++ ++.++++. .+|.|.++|+ .+..+..+..+ ..+..+.++|.|.+++++.. .+|..+.++.
T Consensus 74 ~~v~~~~~spdg~~l~~~~~~~~~v~v~d~~~~~~~~~~~~~------~~~~~~~~s~dg~~l~~~~~--~~~~v~~~d~ 145 (391)
T 1l0q_A 74 SSPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKTG------KSPLGLALSPDGKKLYVTNN--GDKTVSVINT 145 (391)
T ss_dssp SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECS------SSEEEEEECTTSSEEEEEET--TTTEEEEEET
T ss_pred CCccceEECCCCCEEEEEECCCCEEEEEECCCCeEEEEEeCC------CCcceEEECCCCCEEEEEeC--CCCEEEEEEC
Confidence 368899998 45666555 5699999999 44444444332 46789999999999866543 2688888876
Q ss_pred CCCCceeccCCCCceEEEEEecCCCCCCCCcceE-EEEcCCCcEEEEEEecCCcccceeeEEeeeCCCCCceeeEEEEee
Q 002318 98 KWSKPRVLSKLKGLVVNAVAWNRQQITEASTKEI-ILGTDTGQLHEMAVDEKDKREKYIKLLFELNELPEAFMGLQMETA 176 (936)
Q Consensus 98 ~~~k~k~L~klkg~~I~sVaw~~~~~~~~st~~i-LiGt~~G~i~e~~i~~~~~~~~~~k~v~~l~~~~~~I~gi~~~~~ 176 (936)
...+...... .+..+.+++|++. .+.+ +.|..+|.|+...+... + ....+... ..+.++.|..
T Consensus 146 ~~~~~~~~~~-~~~~~~~~~~~~d------g~~l~~~~~~~~~v~~~d~~~~----~-~~~~~~~~---~~~~~~~~~~- 209 (391)
T 1l0q_A 146 VTKAVINTVS-VGRSPKGIAVTPD------GTKVYVANFDSMSISVIDTVTN----S-VIDTVKVE---AAPSGIAVNP- 209 (391)
T ss_dssp TTTEEEEEEE-CCSSEEEEEECTT------SSEEEEEETTTTEEEEEETTTT----E-EEEEEECS---SEEEEEEECT-
T ss_pred CCCcEEEEEe-cCCCcceEEECCC------CCEEEEEeCCCCEEEEEECCCC----e-EEEEEecC---CCccceEECC-
Confidence 5554333222 2557899999843 1245 45667898888766442 1 22222222 4578887752
Q ss_pred ccCCCceEEEEEE---CCCeEEEEec
Q 002318 177 SLSNGTRYYVMAV---TPTRLYSFTG 199 (936)
Q Consensus 177 ~~~~~~~~~i~as---t~~rly~f~~ 199 (936)
+.+.+++++ ....++.|.-
T Consensus 210 ----~g~~l~~~~~~~~~~~v~~~d~ 231 (391)
T 1l0q_A 210 ----EGTKAYVTNVDKYFNTVSMIDT 231 (391)
T ss_dssp ----TSSEEEEEEECSSCCEEEEEET
T ss_pred ----CCCEEEEEecCcCCCcEEEEEC
Confidence 234566655 4677887763
No 133
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=95.90 E-value=0.19 Score=55.99 Aligned_cols=151 Identities=12% Similarity=0.077 Sum_probs=94.9
Q ss_pred CCceeEEEEe--CCEEEEEecCCeEEEEeC-CCCCceeeEcCCCCCCccceeEEEeCCCCCeEEEEeecCCCccEEEEec
Q 002318 21 RGVITCMSAG--NDVIVLGTSKGWLIRHDF-GAGDSYDIDLSAGRPGEQSIHKVFVDPGGSHCIATIVGSGGAETFYTHA 97 (936)
Q Consensus 21 ~~~i~~l~v~--~n~l~l~~~~g~l~ridl-~~~~~~~~~l~~~~~~~~~i~~i~lDp~G~hlli~~~~~~~g~~~Y~~~ 97 (936)
.+.+.+++++ +++++.+..+|.|.+||+ ....+..+..+ ...+..+.++|.|.+++++.. .+|..+.+..
T Consensus 169 ~~~v~~~~~~~~~~~~~s~~~d~~v~~~d~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~l~~~~~--~~~~i~~~d~ 241 (433)
T 3bws_A 169 LGFVETISIPEHNELWVSQMQANAVHVFDLKTLAYKATVDLT-----GKWSKILLYDPIRDLVYCSNW--ISEDISVIDR 241 (433)
T ss_dssp CCEEEEEEEGGGTEEEEEEGGGTEEEEEETTTCCEEEEEECS-----SSSEEEEEEETTTTEEEEEET--TTTEEEEEET
T ss_pred CCceeEEEEcCCCEEEEEECCCCEEEEEECCCceEEEEEcCC-----CCCeeEEEEcCCCCEEEEEec--CCCcEEEEEC
Confidence 3468899984 456677778899999999 54544445433 357899999999999987762 1677777776
Q ss_pred CCCCceeccCCCCceEEEEEecCCCCCCCCcceEEEEc--------CCCcEEEEEEecCCcccceeeEEeeeCCCCCcee
Q 002318 98 KWSKPRVLSKLKGLVVNAVAWNRQQITEASTKEIILGT--------DTGQLHEMAVDEKDKREKYIKLLFELNELPEAFM 169 (936)
Q Consensus 98 ~~~k~k~L~klkg~~I~sVaw~~~~~~~~st~~iLiGt--------~~G~i~e~~i~~~~~~~~~~k~v~~l~~~~~~I~ 169 (936)
...+...... .+..+.+++|++. .+.+++|+ .+|.|+...+... +.... ...+ +.+.
T Consensus 242 ~~~~~~~~~~-~~~~~~~~~~~~~------g~~l~~~~~~~~~~~~~dg~i~~~d~~~~----~~~~~-~~~~---~~~~ 306 (433)
T 3bws_A 242 KTKLEIRKTD-KIGLPRGLLLSKD------GKELYIAQFSASNQESGGGRLGIYSMDKE----KLIDT-IGPP---GNKR 306 (433)
T ss_dssp TTTEEEEECC-CCSEEEEEEECTT------SSEEEEEEEESCTTCSCCEEEEEEETTTT----EEEEE-EEEE---ECEE
T ss_pred CCCcEEEEec-CCCCceEEEEcCC------CCEEEEEECCCCccccCCCeEEEEECCCC----cEEee-ccCC---CCcc
Confidence 5543322222 2356999999843 23677776 4778887766432 11122 2222 3577
Q ss_pred eEEEEeeccCCCceEEEEE-ECCCeEEEEe
Q 002318 170 GLQMETASLSNGTRYYVMA-VTPTRLYSFT 198 (936)
Q Consensus 170 gi~~~~~~~~~~~~~~i~a-st~~rly~f~ 198 (936)
++.|.. +.+.++++ +...+++.|.
T Consensus 307 ~~~~~~-----~g~~l~~~~~~~~~v~v~d 331 (433)
T 3bws_A 307 HIVSGN-----TENKIYVSDMCCSKIEVYD 331 (433)
T ss_dssp EEEECS-----STTEEEEEETTTTEEEEEE
T ss_pred eEEECC-----CCCEEEEEecCCCEEEEEE
Confidence 887752 22344444 3466777665
No 134
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=95.90 E-value=0.11 Score=56.86 Aligned_cols=116 Identities=9% Similarity=0.009 Sum_probs=81.0
Q ss_pred CCceeEEEEeCC--EEEEEecCCe-EEEEeC-CCCCceeeEcCCCCCCccceeEEEeCCCCCeEEEEeecCCCccEEEEe
Q 002318 21 RGVITCMSAGND--VIVLGTSKGW-LIRHDF-GAGDSYDIDLSAGRPGEQSIHKVFVDPGGSHCIATIVGSGGAETFYTH 96 (936)
Q Consensus 21 ~~~i~~l~v~~n--~l~l~~~~g~-l~ridl-~~~~~~~~~l~~~~~~~~~i~~i~lDp~G~hlli~~~~~~~g~~~Y~~ 96 (936)
.+.|+|++.+.+ .|+-|..+|+ |..||+ .+..+..+.-.. ....|..+-.+|.|.+++.++. +|....++
T Consensus 195 ~~~v~~~~~s~~g~~l~s~s~d~~~v~iwd~~~~~~~~~~~~g~---h~~~v~~~~~s~~~~~l~s~s~---d~~v~iw~ 268 (355)
T 3vu4_A 195 TNPIKMVRLNRKSDMVATCSQDGTIIRVFKTEDGVLVREFRRGL---DRADVVDMKWSTDGSKLAVVSD---KWTLHVFE 268 (355)
T ss_dssp SSCEEEEEECTTSSEEEEEETTCSEEEEEETTTCCEEEEEECTT---CCSCEEEEEECTTSCEEEEEET---TCEEEEEE
T ss_pred CCceEEEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEEcCC---CCCcEEEEEECCCCCEEEEEEC---CCEEEEEE
Confidence 457999999764 7888889998 999999 666665554210 1368999999999999999888 88888777
Q ss_pred cCCCC---ceeccC--------------------CCCceEEEEEecCCCCCCCCcceEEEEcCCCcEEEEEEecC
Q 002318 97 AKWSK---PRVLSK--------------------LKGLVVNAVAWNRQQITEASTKEIILGTDTGQLHEMAVDEK 148 (936)
Q Consensus 97 ~~~~k---~k~L~k--------------------lkg~~I~sVaw~~~~~~~~st~~iLiGt~~G~i~e~~i~~~ 148 (936)
..... ...+.. -.......+||.++ ...+++|+.+|.+..+.+...
T Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~d------~~~l~~~~~dg~~~~~~~~~~ 337 (355)
T 3vu4_A 269 IFNDQDNKRHALKGWINMKYFQSEWSLCNFKLSVDKHVRGCKIAWISE------SSLVVVWPHTRMIETFKVVFD 337 (355)
T ss_dssp SSCCSCCCSEETTTTEECCCCCCSSCSEEEECCCCTTCCCCEEEESSS------SEEEEEETTTTEEEEEEEEEE
T ss_pred ccCCCCcccccccceeeccccccccceeEEEeccCCCCCceEEEEeCC------CCEEEEEeCCCeEEEEEEEcC
Confidence 54332 111211 01112366888832 347999999998888877654
No 135
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=95.87 E-value=0.0015 Score=51.02 Aligned_cols=40 Identities=30% Similarity=0.708 Sum_probs=29.9
Q ss_pred ecccccccccchhhhhcccccccccccCCCCCCCCEEEEc-CCChhHHHhHHHHHhh
Q 002318 830 IDRDEDCGVCRRKILVAGRDYRMARGYASVGPMAPFYVFP-CGHAFHAQCLIAHVTQ 885 (936)
Q Consensus 830 i~~~~~C~~C~k~L~~~~~~~~~~~~~~~~~~~~~fvvFp-CgH~fH~~CL~~~~~~ 885 (936)
++.+..|.+|...+.. . ...++.| |||.||.+|+.+.+..
T Consensus 2 ~~~~~~C~IC~~~~~~-----~-----------~~~~~~~~C~H~f~~~Ci~~w~~~ 42 (55)
T 1iym_A 2 MDDGVECAVCLAELED-----G-----------EEARFLPRCGHGFHAECVDMWLGS 42 (55)
T ss_dssp CCCSCCCTTTCCCCCT-----T-----------SCCEECSSSCCEECTTHHHHTTTT
T ss_pred CCCCCcCccCCccccC-----C-----------CceEECCCCCCcccHHHHHHHHHc
Confidence 3557789999988765 1 1456666 9999999999877543
No 136
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=95.83 E-value=0.0026 Score=51.18 Aligned_cols=37 Identities=22% Similarity=0.599 Sum_probs=29.2
Q ss_pred ecccccccccchhhhhcccccccccccCCCCCCCCEEEEcCCChhHHHhHHHHHhh
Q 002318 830 IDRDEDCGVCRRKILVAGRDYRMARGYASVGPMAPFYVFPCGHAFHAQCLIAHVTQ 885 (936)
Q Consensus 830 i~~~~~C~~C~k~L~~~~~~~~~~~~~~~~~~~~~fvvFpCgH~fH~~CL~~~~~~ 885 (936)
+.....|.+|...+.. +.+. +|||.||..|+.+.+..
T Consensus 17 ~~~~~~C~IC~~~~~~------------------p~~~-~CgH~fC~~Ci~~~~~~ 53 (63)
T 2ysj_A 17 LQEEVICPICLDILQK------------------PVTI-DCGHNFCLKCITQIGET 53 (63)
T ss_dssp CCCCCBCTTTCSBCSS------------------CEEC-TTSSEECHHHHHHHHHH
T ss_pred CccCCCCCcCCchhCC------------------eEEe-CCCCcchHHHHHHHHHc
Confidence 4456789999877665 5444 99999999999988763
No 137
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=95.76 E-value=3.9 Score=49.74 Aligned_cols=285 Identities=12% Similarity=0.058 Sum_probs=145.1
Q ss_pred CceeEEEEe-CCEEEEEecCCeEEEEeCCCCCceeeEcC-----CCCCCccceeEEEeCCCCCeEEEEeecCCCccEEEE
Q 002318 22 GVITCMSAG-NDVIVLGTSKGWLIRHDFGAGDSYDIDLS-----AGRPGEQSIHKVFVDPGGSHCIATIVGSGGAETFYT 95 (936)
Q Consensus 22 ~~i~~l~v~-~n~l~l~~~~g~l~ridl~~~~~~~~~l~-----~~~~~~~~i~~i~lDp~G~hlli~~~~~~~g~~~Y~ 95 (936)
..|.++... ++.||+|+..|-|.++|........+... ........|..|+.|+.|. +.|.|. ++-.+++
T Consensus 313 ~~v~~i~~D~~g~lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~-lWigt~---~~Gl~~~ 388 (781)
T 3v9f_A 313 ASARYIFQDSFNNIWIGTWGGGINFISNAPPTFHTWSYSPTQMNESSLSNKVVSSVCDDGQGK-LWIGTD---GGGINVF 388 (781)
T ss_dssp SCEEEEEECSSCCEEEEEBSSCEEEECSSCCSCEEEC----CCCSSCCSSSCEEEEEECTTSC-EEEEEB---SSCEEEE
T ss_pred CeEEEEEEeCCCCEEEEecCCeEEEeCCCCCcceeeccCccccccCCCCCcceEEEEEcCCCC-EEEEeC---CCcEEEE
Confidence 467888774 56899999888899999844444444321 1122246799999999886 777775 3445555
Q ss_pred ecCCCCceecc---CCCCceEEEEEecCCCCCCCCcceEEEEcCCCcEEEEEEecCCcccceeeEEeeeCC-CCCceeeE
Q 002318 96 HAKWSKPRVLS---KLKGLVVNAVAWNRQQITEASTKEIILGTDTGQLHEMAVDEKDKREKYIKLLFELNE-LPEAFMGL 171 (936)
Q Consensus 96 ~~~~~k~k~L~---klkg~~I~sVaw~~~~~~~~st~~iLiGt~~G~i~e~~i~~~~~~~~~~k~v~~l~~-~~~~I~gi 171 (936)
+....+.+... .+.+..|.+++-++ .+.+.+||..|-|+.+....+ .++.. ..+. ....|.+|
T Consensus 389 ~~~~~~~~~~~~~~~~~~~~v~~i~~d~-------~g~lWigt~~~Gl~~~~~~~~-----~~~~~-~~~~~~~~~v~~i 455 (781)
T 3v9f_A 389 ENGKRVAIYNKENRELLSNSVLCSLKDS-------EGNLWFGTYLGNISYYNTRLK-----KFQII-ELEKNELLDVRVF 455 (781)
T ss_dssp ETTEEEEECC-----CCCSBEEEEEECT-------TSCEEEEETTEEEEEECSSSC-----EEEEC-CSTTTCCCCEEEE
T ss_pred ECCCCeEEEccCCCCCCCcceEEEEECC-------CCCEEEEeccCCEEEEcCCCC-----cEEEe-ccCCCCCCeEEEE
Confidence 55433222221 23445788888872 358999998544766533221 13332 1110 12347766
Q ss_pred EEEeeccCCCceEEEEEECCCeEEEEecCCchHHHHhhhhcccccccccC-CCcCCCcceeeeccCCCceEEEeec--Cc
Q 002318 172 QMETASLSNGTRYYVMAVTPTRLYSFTGFGSLDTVFASYLDRAVHFMELP-GEILNSELHFFIKQRRAVHFAWLSG--AG 248 (936)
Q Consensus 172 ~~~~~~~~~~~~~~i~ast~~rly~f~~~~~l~~~f~~~~~~~~~~~el~-~~~~~s~~~~~~~~~~~~~faW~t~--~g 248 (936)
.... .+. +|+.|..-|+.|..... .|.. +...+ ...+...+.... .+ +..-.|+.. .|
T Consensus 456 ~~d~------~g~-lwigt~~Gl~~~~~~~~---~~~~-------~~~~~~~~~~~~~i~~i~-~d-~~g~lWigt~~~G 516 (781)
T 3v9f_A 456 YEDK------NKK-IWIGTHAGVFVIDLASK---KVIH-------HYDTSNSQLLENFVRSIA-QD-SEGRFWIGTFGGG 516 (781)
T ss_dssp EECT------TSE-EEEEETTEEEEEESSSS---SCCE-------EECTTTSSCSCSCEEEEE-EC-TTCCEEEEESSSC
T ss_pred EECC------CCC-EEEEECCceEEEeCCCC---eEEe-------cccCcccccccceeEEEE-Ec-CCCCEEEEEcCCC
Confidence 6542 123 45455577888864321 0110 11111 001111111111 11 233356543 57
Q ss_pred eEEEEeccCCCCCCCCCCCccccccccccccccCCCCCCCCccccccC-CceEEEEECCEE-EEEecCCCcEEEEEEecC
Q 002318 249 IYHGGLNFGAQRSSPNGDENFVENKALLSYSKLSEGAEAVKPGSMAVS-EYHFLLLMGNKV-KVVNRISEQIIEELQFDQ 326 (936)
Q Consensus 249 i~~g~i~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~p~si~lT-~fHillL~~~~l-~ivn~l~~~vv~~~~~~~ 326 (936)
++. ++... ..+ ..+.. +.+-....+.++... +-++.+-...-| ..++.-+++.. .+..
T Consensus 517 l~~--~~~~~---------~~~-----~~~~~-~~~l~~~~i~~i~~d~~g~lWi~T~~Glv~~~d~~~~~~~---~~~~ 576 (781)
T 3v9f_A 517 VGI--YTPDM---------QLV-----RKFNQ-YEGFCSNTINQIYRSSKGQMWLATGEGLVCFPSARNFDYQ---VFQR 576 (781)
T ss_dssp EEE--ECTTC---------CEE-----EEECT-TTTCSCSCEEEEEECTTSCEEEEETTEEEEESCTTTCCCE---EECG
T ss_pred EEE--EeCCC---------CeE-----EEccC-CCCCCCCeeEEEEECCCCCEEEEECCCceEEECCCCCcEE---Eccc
Confidence 766 33210 011 11111 000001123455443 334444445666 66666555532 2221
Q ss_pred CCCCcccceeEEEeecCCCeEEEEeCCcEEEEEcccc
Q 002318 327 TSDSISRGIIGLCSDATAGVFYAYDQNSIFQVSVNDE 363 (936)
Q Consensus 327 ~~~~~~~~~~gl~~D~~~~~~~i~S~~~i~~~~~~~e 363 (936)
..+-....+.+++.| ..+.+|+.+.++|+++.+...
T Consensus 577 ~~gl~~~~i~~i~~d-~~g~lW~~t~~Gl~~~~~~~~ 612 (781)
T 3v9f_A 577 KEGLPNTHIRAISED-KNGNIWASTNTGISCYITSKK 612 (781)
T ss_dssp GGTCSCCCCCEEEEC-SSSCEEEECSSCEEEEETTTT
T ss_pred cCCCCCceEEEEEEC-CCCCEEEEcCCceEEEECCCC
Confidence 111113467788888 467899999999999987643
No 138
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=95.74 E-value=0.74 Score=52.63 Aligned_cols=204 Identities=12% Similarity=0.147 Sum_probs=110.6
Q ss_pred HHHHcCChhHHHHHHHhh-------hhHHHHHHHHHhcccHHHHHHHHhCC----CCchhhHHhhHHHHHh-HChHHHHH
Q 002318 517 LLESYGRVEELVFFASLK-------EQHEIVVHHYIQQGEAKKALQMLRKP----AVPIDLQYKFAPDLIM-LDAYETVE 584 (936)
Q Consensus 517 ll~~~g~~e~~l~~a~~~-------~dy~~ll~~yi~~~~~~~AL~~L~~~----~d~~~li~k~~~~Ll~-~~p~~ti~ 584 (936)
+....|+.++++.+.+.. .-+..+...|...|+|++|++.+.+. ++....+...+..++. ...++++.
T Consensus 252 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 331 (537)
T 3fp2_A 252 FHFLKNNLLDAQVLLQESINLHPTPNSYIFLALTLADKENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYFILQDYKNAKE 331 (537)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHhcccHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHH
Confidence 444567777777666653 22445556777888999998887643 2323555555555543 46677777
Q ss_pred HHHccCCCCCCcchh--Hhh-hcCCCCCCCCChHHHHHHHHHHHhhcCCCCHhHHHHHHHHhhcCCChHHHHHHHHHhhC
Q 002318 585 SWMTTNNLNPRKLIP--AMM-RYSSEPHAKNETHEVIKYLEFCVHRLHNEDPGVHNLLLSLYAKQEDDSALLRFLQCKFG 661 (936)
Q Consensus 585 ll~~~~~ld~~~li~--~L~-~~~~~~~~~~~~~~~~~YLe~li~~~~~~~~~~hn~ll~Ly~~~~~~~~Ll~fL~~~~~ 661 (936)
.+.+...++|..... .+- -+.. ......++.+++..+...+. +..++..+..+|...++.++-+.+++..
T Consensus 332 ~~~~a~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~a-- 404 (537)
T 3fp2_A 332 DFQKAQSLNPENVYPYIQLACLLYK----QGKFTESEAFFNETKLKFPT-LPEVPTFFAEILTDRGDFDTAIKQYDIA-- 404 (537)
T ss_dssp HHHHHHHHCTTCSHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCTT-CTHHHHHHHHHHHHTTCHHHHHHHHHHH--
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHhCCHHHHHHHHHHH--
Confidence 764432233332111 010 0000 02356688888888776543 4566666777777765555555554432
Q ss_pred CCCCCCCcccCChHHHHHHHHhcCcce-------eeehhhhcc----------ccHHHHHHHHHhcCHHHHHHHhhccCC
Q 002318 662 KGRENGPEFFYDPKYALRLCLKEKRMR-------ACVHIYGMM----------SMHEEAVALALQVDPELAMAEADKVED 724 (936)
Q Consensus 662 ~~~~~~~~~~yd~~~aLrlc~~~~~~~-------~~v~L~~~~----------g~~~eAl~l~l~~di~lA~~~a~~~~~ 724 (936)
+++........ ....+|.++ |++++|+..+-. |.+. .+ +
T Consensus 405 ----------------~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~-----a~~~--~p-~ 460 (537)
T 3fp2_A 405 ----------------KRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTK-----ACEL--DP-R 460 (537)
T ss_dssp ----------------HHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHH-----HHHH--CT-T
T ss_pred ----------------HHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHH-----HHHh--CC-C
Confidence 22222111110 112345555 888888876543 2222 12 2
Q ss_pred CHHHHHHHHHHHHHHHhhcccCCChHhHHHHHHHHHh
Q 002318 725 DEDLRKKLWLMVAKHVIEQEKGTKRENIRKAIAFLKE 761 (936)
Q Consensus 725 d~~~~kkLWl~ll~~~i~~~~~~~~~~i~~~l~~L~~ 761 (936)
+.+ .|..++...... ++...+++.++.
T Consensus 461 ~~~----~~~~l~~~~~~~------g~~~~A~~~~~~ 487 (537)
T 3fp2_A 461 SEQ----AKIGLAQLKLQM------EKIDEAIELFED 487 (537)
T ss_dssp CHH----HHHHHHHHHHHT------TCHHHHHHHHHH
T ss_pred CHH----HHHHHHHHHHHh------ccHHHHHHHHHH
Confidence 333 788888877765 356666665544
No 139
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=95.73 E-value=0.9 Score=48.23 Aligned_cols=58 Identities=17% Similarity=0.058 Sum_probs=36.5
Q ss_pred ceEEEEECC-EEEEEecCCCcEEEEEEecCCCCCcccceeEEEeecCCCeEEEEeCCcEEEEEcccc
Q 002318 298 YHFLLLMGN-KVKVVNRISEQIIEELQFDQTSDSISRGIIGLCSDATAGVFYAYDQNSIFQVSVNDE 363 (936)
Q Consensus 298 fHillL~~~-~l~ivn~l~~~vv~~~~~~~~~~~~~~~~~gl~~D~~~~~~~i~S~~~i~~~~~~~e 363 (936)
-++.+-..+ .|..++. +++.+....+. ...+..++.| ..+.+|+-+.++++.+.....
T Consensus 266 g~l~v~t~~ggl~~~d~-~g~~~~~~~~~------~~~~~~~~~d-~~g~l~~gt~~G~~~~~~~~~ 324 (330)
T 3hxj_A 266 DTIYFGSYDGHLYAINP-DGTEKWNFETG------SWIIATPVID-ENGTIYFGTRNGKFYALFNLE 324 (330)
T ss_dssp SCEEEECTTCEEEEECT-TSCEEEEEECS------SCCCSCCEEC-TTCCEEEECTTSCEEEEEC--
T ss_pred CeEEEecCCCCEEEECC-CCcEEEEEEcC------CccccceEEc-CCCEEEEEcCCCeEEEEeccc
Confidence 344444444 7888885 77777665542 1234456665 457899999999888876543
No 140
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=95.70 E-value=0.22 Score=53.34 Aligned_cols=168 Identities=11% Similarity=0.023 Sum_probs=103.7
Q ss_pred CCceeEEEEe----CCEEEEEecCCeEEEEeC-CCCCceeeEcCCCCCCccceeEEEeCCC--CCeEEEEeecCCCccEE
Q 002318 21 RGVITCMSAG----NDVIVLGTSKGWLIRHDF-GAGDSYDIDLSAGRPGEQSIHKVFVDPG--GSHCIATIVGSGGAETF 93 (936)
Q Consensus 21 ~~~i~~l~v~----~n~l~l~~~~g~l~ridl-~~~~~~~~~l~~~~~~~~~i~~i~lDp~--G~hlli~~~~~~~g~~~ 93 (936)
.+.|.+++.+ ++.|+-|-.+|+|..||+ .+.......+. .-...|..+-..|. |..++.++. +|...
T Consensus 57 ~~~V~~v~~~~~~~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~~---~h~~~V~~v~~~p~~~g~~lasgs~---D~~i~ 130 (316)
T 3bg1_A 57 EGPVWQVAWAHPMYGNILASCSYDRKVIIWREENGTWEKSHEHA---GHDSSVNSVCWAPHDYGLILACGSS---DGAIS 130 (316)
T ss_dssp SSCEEEEEECCGGGSSCEEEEETTSCEEEECCSSSCCCEEEEEC---CCSSCCCEEEECCTTTCSCEEEECS---SSCEE
T ss_pred CccEEEEEeCCCCCCCEEEEEECCCEEEEEECCCCcceEEEEcc---CCCCceEEEEECCCCCCcEEEEEcC---CCCEE
Confidence 4579999985 578999999999999999 43211112222 11357899999887 777777777 88887
Q ss_pred EEecCCCC-ceeccCCCC--ceEEEEEecCCCCCC-----------CCcceEEEEcCCCcEEEEEEecCCcccceeeEEe
Q 002318 94 YTHAKWSK-PRVLSKLKG--LVVNAVAWNRQQITE-----------ASTKEIILGTDTGQLHEMAVDEKDKREKYIKLLF 159 (936)
Q Consensus 94 Y~~~~~~k-~k~L~klkg--~~I~sVaw~~~~~~~-----------~st~~iLiGt~~G~i~e~~i~~~~~~~~~~k~v~ 159 (936)
.+...... ......+.+ ..|.+++|++..... .....++.|+.+|.|....+... ..++.+.
T Consensus 131 lwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~----~~~~~~~ 206 (316)
T 3bg1_A 131 LLTYTGEGQWEVKKINNAHTIGCNAVSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEED----GQWKEEQ 206 (316)
T ss_dssp EEEECSSSCEEECCBTTSSSSCBCCCEECCCCCC------CCSCCCCCCCBEECCBTTSBCCEEEECTT----SCEEEEE
T ss_pred EEecCCCCCcceeeeeccccCCcceEEEccccCCccccccccccCccccceEEEecCCCeEEEEEeCCC----Cccceee
Confidence 76654331 212222233 468899999642110 01236778888998877666432 1123333
Q ss_pred eeCCCCCceeeEEEEeeccCCCceEEEEEECCCeEEEEec
Q 002318 160 ELNELPEAFMGLQMETASLSNGTRYYVMAVTPTRLYSFTG 199 (936)
Q Consensus 160 ~l~~~~~~I~gi~~~~~~~~~~~~~~i~ast~~rly~f~~ 199 (936)
.+..-.++|.++.|.... +...+.++-++....+.-|.-
T Consensus 207 ~l~~h~~~V~~v~~sp~~-~~~~~~las~s~D~~v~iw~~ 245 (316)
T 3bg1_A 207 KLEAHSDWVRDVAWAPSI-GLPTSTIASCSQDGRVFIWTC 245 (316)
T ss_dssp CCBCCSSCEEEEECCCCS-SCSCCEEEEEETTCEEEEEEC
T ss_pred ecccCCCceEEEEecCCC-CCCCceEEEEcCCCeEEEEEc
Confidence 444334679999987421 001256777777888887853
No 141
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=95.68 E-value=0.0045 Score=50.60 Aligned_cols=43 Identities=21% Similarity=0.413 Sum_probs=31.7
Q ss_pred cccccccccchhhhhcccccccccccCCCCCCCCEEEEcCCChhHHHhHHHHHhh
Q 002318 831 DRDEDCGVCRRKILVAGRDYRMARGYASVGPMAPFYVFPCGHAFHAQCLIAHVTQ 885 (936)
Q Consensus 831 ~~~~~C~~C~k~L~~~~~~~~~~~~~~~~~~~~~fvvFpCgH~fH~~CL~~~~~~ 885 (936)
.....|.+|...+...... ...+++.+|||.||..|+...+..
T Consensus 13 ~~~~~C~IC~~~~~~~~~~------------~~~~~~~~CgH~fc~~Ci~~~~~~ 55 (69)
T 2ea6_A 13 SGTVSCPICMDGYSEIVQN------------GRLIVSTECGHVFCSQCLRDSLKN 55 (69)
T ss_dssp TCCCCCTTTCCCHHHHTTT------------TCCEEECSSSCEEEHHHHHHHHHH
T ss_pred CCCCCCcccCccccccccc------------cCCeEeCCCCChhcHHHHHHHHHc
Confidence 4567899999887762100 015678899999999999988754
No 142
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=95.65 E-value=4.1 Score=49.64 Aligned_cols=285 Identities=12% Similarity=0.068 Sum_probs=148.0
Q ss_pred CceeEEEEe-CCEEEEEecCCeEEEEeCCCCCceeeEcCC--CCCCccceeEEEeCCCCCeEEEEeecCCCccEEEEecC
Q 002318 22 GVITCMSAG-NDVIVLGTSKGWLIRHDFGAGDSYDIDLSA--GRPGEQSIHKVFVDPGGSHCIATIVGSGGAETFYTHAK 98 (936)
Q Consensus 22 ~~i~~l~v~-~n~l~l~~~~g~l~ridl~~~~~~~~~l~~--~~~~~~~i~~i~lDp~G~hlli~~~~~~~g~~~Y~~~~ 98 (936)
..|.++... ++.||+|+..|-|.++|........+.... .......|..|+.|+.|. +-|.|. +|-.++++..
T Consensus 310 ~~i~~i~~D~~g~lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~l~~~~V~~i~~d~~g~-lWiGt~---~~Gl~~~~~~ 385 (795)
T 4a2l_A 310 RSVRSIFMDSQGGMWLGTYFGGLNYYHPIRNRFKNIRNIPYKNSLSDNVVSCIVEDKDKN-LWIGTN---DGGLNLYNPI 385 (795)
T ss_dssp SCEEEEEECTTSCEEEEESSSCEEEECGGGGSSEEECCCTTSSSCSCSSEEEEEECTTSC-EEEEES---SSCEEEECTT
T ss_pred CcEEEEEEeCCcCEEEEECCCCeEEeCCCcccceEEcCCCCCCCCCCCeeEEEEECCCCC-EEEEEC---CCCeEEEcCC
Confidence 458888775 568999999888999988333344332211 111245799999999986 777777 5556677665
Q ss_pred CCCceecc--------CCCCceEEEEEecCCCCCCCCcce-EEEEcCCCcEEEEEEecCCcccceeeEEee----eCCCC
Q 002318 99 WSKPRVLS--------KLKGLVVNAVAWNRQQITEASTKE-IILGTDTGQLHEMAVDEKDKREKYIKLLFE----LNELP 165 (936)
Q Consensus 99 ~~k~k~L~--------klkg~~I~sVaw~~~~~~~~st~~-iLiGt~~G~i~e~~i~~~~~~~~~~k~v~~----l~~~~ 165 (936)
..+.+... .+.+..|.+++.++ .+. +.+||..|-|+.+....+ .++.... ++.
T Consensus 386 ~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~-------~g~~lWigt~~~Gl~~~d~~~~-----~~~~~~~~~~~l~~-- 451 (795)
T 4a2l_A 386 TQRFTSYTLQEDESARGIGSNNIKAVYVDE-------KKSLVYIGTHAGGLSILHRNSG-----QVENFNQRNSQLVN-- 451 (795)
T ss_dssp TCCEEEECCC------CCSCSCEEEEEEET-------TTTEEEEEETTTEEEEEETTTC-----CEEEECTTTSCCSC--
T ss_pred CCcEEEEecCCCCcccCCCCccEEEEEEcC-------CCCEEEEEeCcCceeEEeCCCC-----cEEEeecCCCCcCC--
Confidence 55444432 13356789998872 357 999998654776654322 1222211 221
Q ss_pred CceeeEEEEeeccCCCceEEEEEECCCeEEEEecCCchHHHHhhhhcccccccccCCCcCCCcceeeeccCCCceEEEe-
Q 002318 166 EAFMGLQMETASLSNGTRYYVMAVTPTRLYSFTGFGSLDTVFASYLDRAVHFMELPGEILNSELHFFIKQRRAVHFAWL- 244 (936)
Q Consensus 166 ~~I~gi~~~~~~~~~~~~~~i~ast~~rly~f~~~~~l~~~f~~~~~~~~~~~el~~~~~~s~~~~~~~~~~~~~faW~- 244 (936)
..|.+|.... .+. +|+.|..-|+.|..... .|..+.. ..-+...+...+.... .+ +..-.|+
T Consensus 452 ~~v~~i~~d~------~g~-lwigt~~Gl~~~~~~~~---~~~~~~~-----~~~~~~~~~~~i~~i~-~d-~~g~lWig 514 (795)
T 4a2l_A 452 ENVYAILPDG------EGN-LWLGTLSALVRFNPEQR---SFTTIEK-----EKDGTPVVSKQITTLF-RD-SHKRLWIG 514 (795)
T ss_dssp SCEEEEEECS------SSC-EEEEESSCEEEEETTTT---EEEECCB-----CTTCCBCCCCCEEEEE-EC-TTCCEEEE
T ss_pred CeeEEEEECC------CCC-EEEEecCceeEEeCCCC---eEEEccc-----cccccccCCceEEEEE-EC-CCCCEEEE
Confidence 3466666542 122 44445467887764221 0111100 0000111111111111 11 2233453
Q ss_pred ecCceEEEEeccCCCCCCCCCCCccccccccccc---cccCCCCCCCCccccccC-CceEEEEECCEEEEEecCCCcEEE
Q 002318 245 SGAGIYHGGLNFGAQRSSPNGDENFVENKALLSY---SKLSEGAEAVKPGSMAVS-EYHFLLLMGNKVKVVNRISEQIIE 320 (936)
Q Consensus 245 t~~gi~~g~i~~~~~~~~~~~~~~~~~~~~l~~~---~~l~~~~~~~~p~si~lT-~fHillL~~~~l~ivn~l~~~vv~ 320 (936)
|..|++.-..... .+ . +... ..++ ...+.++... +-.+.+-....|..++.-+++..
T Consensus 515 t~~Gl~~~~~~~~-----------~~-~--~~~~~~~~~l~----~~~i~~i~~d~~g~lWigT~~Gl~~~d~~~~~~~- 575 (795)
T 4a2l_A 515 GEEGLSVFKQEGL-----------DI-Q--KASILPVSNVT----KLFTNCIYEASNGIIWVGTREGFYCFNEKDKQIK- 575 (795)
T ss_dssp ESSCEEEEEEETT-----------EE-E--ECCCSCSCGGG----GSCEEEEEECTTSCEEEEESSCEEEEETTTTEEE-
T ss_pred eCCceEEEeCCCC-----------eE-E--EecCCCCCCCC----CCeeEEEEECCCCCEEEEeCCCceeECCCCCcEE-
Confidence 3367766322211 00 0 0000 0011 1123444443 33344444457777777666543
Q ss_pred EEEecCCCCCcccceeEEEeecCCCeEEEEeCCcEEEEEcccc
Q 002318 321 ELQFDQTSDSISRGIIGLCSDATAGVFYAYDQNSIFQVSVNDE 363 (936)
Q Consensus 321 ~~~~~~~~~~~~~~~~gl~~D~~~~~~~i~S~~~i~~~~~~~e 363 (936)
.+....+-....+.+++.| ..+.+|+.|.++|+++.+...
T Consensus 576 --~~~~~~gl~~~~i~~i~~d-~~g~lWi~t~~Gl~~~~~~~~ 615 (795)
T 4a2l_A 576 --RYNTTNGLPNNVVYGILED-SFGRLWLSTNRGISCFNPETE 615 (795)
T ss_dssp --EECGGGTCSCSCEEEEEEC-TTSCEEEEETTEEEEEETTTT
T ss_pred --EeCCCCCCchhheEEEEEC-CCCCEEEEcCCceEEEcCCCC
Confidence 2221111113467888887 457899999999999987643
No 143
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=95.63 E-value=0.28 Score=54.07 Aligned_cols=158 Identities=8% Similarity=0.051 Sum_probs=99.2
Q ss_pred CceeEEEEe---CCEEEEEecCCeEEEEeC-CCCCceeeEcCCCCCCccceeEEEeCC-CCCeEEEEeecCCCccEEEEe
Q 002318 22 GVITCMSAG---NDVIVLGTSKGWLIRHDF-GAGDSYDIDLSAGRPGEQSIHKVFVDP-GGSHCIATIVGSGGAETFYTH 96 (936)
Q Consensus 22 ~~i~~l~v~---~n~l~l~~~~g~l~ridl-~~~~~~~~~l~~~~~~~~~i~~i~lDp-~G~hlli~~~~~~~g~~~Y~~ 96 (936)
+.|++++.. ++.++-|..+|+|..||+ .+..+..+..+.+..-...|..+...| .|..++.++. +|....+.
T Consensus 158 ~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sgs~---D~~v~~wd 234 (380)
T 3iz6_a 158 GYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSINSLNANMFISGSC---DTTVRLWD 234 (380)
T ss_dssp SCCCCCBCCSSSSSCEEEECTTSCEEEECTTTCCEEEEECCCSSSSCCSCEEEEEECSSSCCEEEEEET---TSCEEEEE
T ss_pred cceEEEEEecCCCCEEEEECCCCcEEEEEcCCCcEEEEeecccCCCCccCeEEEEeecCCCCEEEEEEC---CCeEEEEE
Confidence 345555554 346888999999999999 655544443222222246788888876 5666666666 89988887
Q ss_pred cCCC--CceeccCCCCceEEEEEecCCCCCCCCcceEEEEcCCCcEEEEEEecCCcccceeeEEeeeCC-----CCCcee
Q 002318 97 AKWS--KPRVLSKLKGLVVNAVAWNRQQITEASTKEIILGTDTGQLHEMAVDEKDKREKYIKLLFELNE-----LPEAFM 169 (936)
Q Consensus 97 ~~~~--k~k~L~klkg~~I~sVaw~~~~~~~~st~~iLiGt~~G~i~e~~i~~~~~~~~~~k~v~~l~~-----~~~~I~ 169 (936)
.... ..+.+.. ....|.+|+|+++ ...|+.|+.+|.|....+..+. ...++.... ....|+
T Consensus 235 ~~~~~~~~~~~~~-h~~~v~~v~~~p~------~~~l~s~s~D~~i~lwd~~~~~-----~~~~~~~~~~~~~~~~~~v~ 302 (380)
T 3iz6_a 235 LRITSRAVRTYHG-HEGDINSVKFFPD------GQRFGTGSDDGTCRLFDMRTGH-----QLQVYNREPDRNDNELPIVT 302 (380)
T ss_dssp TTTTCCCCEEECC-CSSCCCEEEECTT------SSEEEEECSSSCEEEEETTTTE-----EEEEECCCCSSSCCSSCSCS
T ss_pred CCCCCcceEEECC-cCCCeEEEEEecC------CCeEEEEcCCCeEEEEECCCCc-----EEEEecccccccccccCceE
Confidence 6532 2233321 2247999999953 2378889999998877665431 122222211 112478
Q ss_pred eEEEEeeccCCCceEEEEEECCCeEEEEec
Q 002318 170 GLQMETASLSNGTRYYVMAVTPTRLYSFTG 199 (936)
Q Consensus 170 gi~~~~~~~~~~~~~~i~ast~~rly~f~~ 199 (936)
++.|.. +.++++.++....++-|.-
T Consensus 303 ~~~~s~-----~g~~l~~g~~dg~i~vwd~ 327 (380)
T 3iz6_a 303 SVAFSI-----SGRLLFAGYSNGDCYVWDT 327 (380)
T ss_dssp EEEECS-----SSSEEEEECTTSCEEEEET
T ss_pred EEEECC-----CCCEEEEEECCCCEEEEEC
Confidence 888863 2357777777888888864
No 144
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=95.63 E-value=0.0025 Score=53.35 Aligned_cols=38 Identities=32% Similarity=0.652 Sum_probs=30.2
Q ss_pred ccccccccchhhhhcccccccccccCCCCCCCCEEEEcCCChhHHHhHHHHHhh
Q 002318 832 RDEDCGVCRRKILVAGRDYRMARGYASVGPMAPFYVFPCGHAFHAQCLIAHVTQ 885 (936)
Q Consensus 832 ~~~~C~~C~k~L~~~~~~~~~~~~~~~~~~~~~fvvFpCgH~fH~~CL~~~~~~ 885 (936)
....|.+|...+.. . ..+++.||||.||..|+...+..
T Consensus 22 ~~~~C~IC~~~~~~-----~-----------~~~~~l~C~H~fh~~Ci~~w~~~ 59 (75)
T 1x4j_A 22 EQTLCVVCMCDFES-----R-----------QLLRVLPCNHEFHAKCVDKWLKA 59 (75)
T ss_dssp SCCEETTTTEECCB-----T-----------CEEEEETTTEEEETTHHHHHHHH
T ss_pred CCCCCeECCcccCC-----C-----------CeEEEECCCCHhHHHHHHHHHHc
Confidence 45689999988765 2 15778899999999999988754
No 145
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=95.56 E-value=0.0031 Score=51.99 Aligned_cols=43 Identities=21% Similarity=0.413 Sum_probs=31.6
Q ss_pred cccccccccchhhhhcccccccccccCCCCCCCCEEEEcCCChhHHHhHHHHHhh
Q 002318 831 DRDEDCGVCRRKILVAGRDYRMARGYASVGPMAPFYVFPCGHAFHAQCLIAHVTQ 885 (936)
Q Consensus 831 ~~~~~C~~C~k~L~~~~~~~~~~~~~~~~~~~~~fvvFpCgH~fH~~CL~~~~~~ 885 (936)
+....|.+|...+..+... ....++.+|||.||..|+...+..
T Consensus 8 ~~~~~C~IC~~~~~~~~~~------------~~~~~~~~CgH~fc~~Ci~~~~~~ 50 (71)
T 3ng2_A 8 SGTVSCPICMDGYSEIVQN------------GRLIVSTECGHVFCSQCLRDSLKN 50 (71)
T ss_dssp TTCCBCTTTCCBHHHHHTT------------TCCEEECTTSCEEEHHHHHHHHHH
T ss_pred CCCCCCcccChhhhccccc------------cCCeEeCCCCChHhHHHHHHHHHc
Confidence 4567899999887662100 015678899999999999988753
No 146
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=95.51 E-value=0.0043 Score=52.84 Aligned_cols=50 Identities=22% Similarity=0.385 Sum_probs=29.1
Q ss_pred ccccccccchhhhhcccc-cccccccCCCCCCCCEEEEcCCChhHHHhHHHHHhhc
Q 002318 832 RDEDCGVCRRKILVAGRD-YRMARGYASVGPMAPFYVFPCGHAFHAQCLIAHVTQC 886 (936)
Q Consensus 832 ~~~~C~~C~k~L~~~~~~-~~~~~~~~~~~~~~~fvvFpCgH~fH~~CL~~~~~~~ 886 (936)
.+..|++|...+...-.. .. .........+.-+|||.||.+|+...+...
T Consensus 14 ~~~~C~IC~~~~~~~C~iC~~-----~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~ 64 (81)
T 2ecl_A 14 ECDTCAICRVQVMDACLRCQA-----ENKQEDCVVVWGECNHSFHNCCMSLWVKQN 64 (81)
T ss_dssp CCSCBTTTTBCTTSCCTTHHH-----HTCTTTCCEEEETTSCEEEHHHHHHHTTTC
T ss_pred CCCCCcccChhhhccCccccc-----ccCCCceEEEeCCCCCccChHHHHHHHHhC
Confidence 467799999888541000 00 000001133444599999999999887543
No 147
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=95.44 E-value=0.0043 Score=54.16 Aligned_cols=38 Identities=21% Similarity=0.541 Sum_probs=29.9
Q ss_pred ccccccccchhhhhcccccccccccCCCCCCCCEEEEcCCChhHHHhHHHHHhh
Q 002318 832 RDEDCGVCRRKILVAGRDYRMARGYASVGPMAPFYVFPCGHAFHAQCLIAHVTQ 885 (936)
Q Consensus 832 ~~~~C~~C~k~L~~~~~~~~~~~~~~~~~~~~~fvvFpCgH~fH~~CL~~~~~~ 885 (936)
....|.+|...+.. . ...++.||||.||..|+...+..
T Consensus 39 ~~~~C~IC~~~~~~-----~-----------~~~~~l~C~H~Fh~~Ci~~wl~~ 76 (91)
T 2l0b_A 39 QEMCCPICCSEYVK-----G-----------DVATELPCHHYFHKPCVSIWLQK 76 (91)
T ss_dssp SCSEETTTTEECCT-----T-----------CEEEEETTTEEEEHHHHHHHHTT
T ss_pred CCCCCcccChhhcC-----C-----------CcEEecCCCChHHHHHHHHHHHc
Confidence 45679999987755 2 15778899999999999987653
No 148
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=95.44 E-value=0.0062 Score=48.91 Aligned_cols=41 Identities=24% Similarity=0.451 Sum_probs=30.4
Q ss_pred cccccccchhhhhcccccccccccCCCCCCCCEEEEcCCChhHHHhHHHHHhh
Q 002318 833 DEDCGVCRRKILVAGRDYRMARGYASVGPMAPFYVFPCGHAFHAQCLIAHVTQ 885 (936)
Q Consensus 833 ~~~C~~C~k~L~~~~~~~~~~~~~~~~~~~~~fvvFpCgH~fH~~CL~~~~~~ 885 (936)
...|.+|...+.......+ ..++.+|||.||..|+...+..
T Consensus 3 ~~~C~IC~~~~~~~~~~~~------------~~~~~~CgH~fc~~Ci~~~~~~ 43 (64)
T 2xeu_A 3 MVSCPICMDGYSEIVQNGR------------LIVSTECGHVFCSQCLRDSLKN 43 (64)
T ss_dssp CCBCTTTCCBHHHHHHTTC------------CEEEETTSCEEEHHHHHHHHHH
T ss_pred CCCCCccChhhhCccccCC------------CEEeCCCCCchhHHHHHHHHHc
Confidence 4679999988765210001 5688899999999999988754
No 149
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=95.39 E-value=0.69 Score=51.48 Aligned_cols=125 Identities=8% Similarity=0.065 Sum_probs=81.1
Q ss_pred eeEEEEeCCEEEEEecCCeEEEEeC-CCCCceeeEcCCCCCCccceeEEEeCCCCCeEEEEeecCCCccEEEEecCCCCc
Q 002318 24 ITCMSAGNDVIVLGTSKGWLIRHDF-GAGDSYDIDLSAGRPGEQSIHKVFVDPGGSHCIATIVGSGGAETFYTHAKWSKP 102 (936)
Q Consensus 24 i~~l~v~~n~l~l~~~~g~l~ridl-~~~~~~~~~l~~~~~~~~~i~~i~lDp~G~hlli~~~~~~~g~~~Y~~~~~~k~ 102 (936)
|++++..+++|+++ .+|.|..+|. .-.+....... ...|..+. |.+..++++++ +|..+-++.+..+.
T Consensus 90 V~~l~fd~~~L~v~-~~~~l~v~dv~sl~~~~~~~~~-----~~~v~~i~--~~~p~~av~~~---dG~L~v~dl~~~~~ 158 (388)
T 1xip_A 90 VIFVCFHGDQVLVS-TRNALYSLDLEELSEFRTVTSF-----EKPVFQLK--NVNNTLVILNS---VNDLSALDLRTKST 158 (388)
T ss_dssp EEEEEEETTEEEEE-ESSEEEEEESSSTTCEEEEEEC-----SSCEEEEE--ECSSEEEEEET---TSEEEEEETTTCCE
T ss_pred eeEEEECCCEEEEE-cCCcEEEEEchhhhccCcccee-----ecceeeEE--ecCCCEEEEEC---CCCEEEEEccCCcc
Confidence 89999988999999 8899999998 44444333322 12344432 22334888887 89999888765544
Q ss_pred eeccCCCCceEEEEEecCCCCCCCCcceEEEEcCCCcEEEEEEecCCcccceeeEEeee----CC---CCCceeeEEEE
Q 002318 103 RVLSKLKGLVVNAVAWNRQQITEASTKEIILGTDTGQLHEMAVDEKDKREKYIKLLFEL----NE---LPEAFMGLQME 174 (936)
Q Consensus 103 k~L~klkg~~I~sVaw~~~~~~~~st~~iLiGt~~G~i~e~~i~~~~~~~~~~k~v~~l----~~---~~~~I~gi~~~ 174 (936)
..+. -.|+||+|++. | +.+|..+|.|..+..+... -.-|..+.. .+ .+..|.+|.|.
T Consensus 159 ~~~~----~~Vs~v~WSpk-------G-~~vg~~dg~i~~~~~~~~~---~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl 222 (388)
T 1xip_A 159 KQLA----QNVTSFDVTNS-------Q-LAVLLKDRSFQSFAWRNGE---MEKQFEFSLPSELEELPVEEYSPLSVTIL 222 (388)
T ss_dssp EEEE----ESEEEEEECSS-------E-EEEEETTSCEEEEEEETTE---EEEEEEECCCHHHHTSCTTTSEEEEEEES
T ss_pred cccc----CCceEEEEcCC-------c-eEEEEcCCcEEEEcCCCcc---ccccceecCCcccccccCCCeeEEEEEEe
Confidence 4432 37999999932 3 7899999998888665431 000222211 11 13568999997
No 150
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=95.38 E-value=0.14 Score=58.12 Aligned_cols=114 Identities=10% Similarity=0.046 Sum_probs=74.8
Q ss_pred CceeEEEEeC--CEEEE----EecCCeEEEEeC-CC--------CCceeeEcCCCCCCccceeEEEeCCC-CCeEEEEee
Q 002318 22 GVITCMSAGN--DVIVL----GTSKGWLIRHDF-GA--------GDSYDIDLSAGRPGEQSIHKVFVDPG-GSHCIATIV 85 (936)
Q Consensus 22 ~~i~~l~v~~--n~l~l----~~~~g~l~ridl-~~--------~~~~~~~l~~~~~~~~~i~~i~lDp~-G~hlli~~~ 85 (936)
+.|++++.+. +.|++ |..+|.|..||+ .. ..+..+.... .-...|..+-.+|. |..++.++.
T Consensus 93 ~~v~~l~~spdg~~lav~~~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~--~h~~~V~~v~~~p~~~~~las~s~ 170 (434)
T 2oit_A 93 FPIHHLALSCDNLTLSACMMSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLK--DAGGMVIDMKWNPTVPSMVAVCLA 170 (434)
T ss_dssp SCEEEEEECTTSCEEEEEEEETTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCC--SGGGSEEEEEECSSCTTEEEEEET
T ss_pred CcccEEEEcCCCCEEEEEEeccCCCceEEEEEccccccCCcCCcceeeeeeccC--CCCCceEEEEECCCCCCEEEEEEC
Confidence 3589999985 46664 335789999998 33 1112233321 11468999999998 666666676
Q ss_pred cCCCccEEEEecCCCCceeccCCCCceEEEEEecCCCCCCCCcceEEEEcCCCcEEEEEEe
Q 002318 86 GSGGAETFYTHAKWSKPRVLSKLKGLVVNAVAWNRQQITEASTKEIILGTDTGQLHEMAVD 146 (936)
Q Consensus 86 ~~~~g~~~Y~~~~~~k~k~L~klkg~~I~sVaw~~~~~~~~st~~iLiGt~~G~i~e~~i~ 146 (936)
+|....+.....+...-..-.+..|.+++|++. ...++.|+.+|.|....+.
T Consensus 171 ---Dg~v~iwD~~~~~~~~~~~~~~~~v~~v~wspd------g~~lasgs~dg~v~iwd~~ 222 (434)
T 2oit_A 171 ---DGSIAVLQVTETVKVCATLPSTVAVTSVCWSPK------GKQLAVGKQNGTVVQYLPT 222 (434)
T ss_dssp ---TSCEEEEEESSSEEEEEEECGGGCEEEEEECTT------SSCEEEEETTSCEEEECTT
T ss_pred ---CCeEEEEEcCCCcceeeccCCCCceeEEEEcCC------CCEEEEEcCCCcEEEEccC
Confidence 899988877554221111112358999999943 2378899999998877554
No 151
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=95.34 E-value=3.6 Score=44.55 Aligned_cols=49 Identities=12% Similarity=0.085 Sum_probs=39.3
Q ss_pred HHHchhhHHHHHHhcCC--------hhhHHHHHHHHHHHHHhcCCHHHHHHHHHHhc
Q 002318 370 VYLDMKEYAAALANCRD--------PLQRDQVYLVQAEAAFATKDFHRAASFYAKIN 418 (936)
Q Consensus 370 ~ll~~~~f~~Al~~~~~--------~~~~~~I~~~~~~~L~~~g~y~~Aa~~y~~~~ 418 (936)
.++..|+|++|+.+.+. +..+..+....|..++..|+|++|...|.+..
T Consensus 18 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 74 (406)
T 3sf4_A 18 RLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDL 74 (406)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 47788999999988652 23346788899999999999999999887754
No 152
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=95.33 E-value=0.0033 Score=52.99 Aligned_cols=39 Identities=26% Similarity=0.726 Sum_probs=30.8
Q ss_pred cccccccccchhhhhcccccccccccCCCCCCCCEEEEcCCChhHHHhHHHHHhh
Q 002318 831 DRDEDCGVCRRKILVAGRDYRMARGYASVGPMAPFYVFPCGHAFHAQCLIAHVTQ 885 (936)
Q Consensus 831 ~~~~~C~~C~k~L~~~~~~~~~~~~~~~~~~~~~fvvFpCgH~fH~~CL~~~~~~ 885 (936)
.....|.+|...+.. . ...++.+|||.||..|+...+..
T Consensus 13 ~~~~~C~IC~~~~~~-----~-----------~~~~~~~C~H~fc~~Ci~~~~~~ 51 (78)
T 2ect_A 13 GSGLECPVCKEDYAL-----G-----------ESVRQLPCNHLFHDSCIVPWLEQ 51 (78)
T ss_dssp SSSCCCTTTTSCCCT-----T-----------SCEEECTTSCEEETTTTHHHHTT
T ss_pred CCCCCCeeCCccccC-----C-----------CCEEEeCCCCeecHHHHHHHHHc
Confidence 346789999988765 2 15677899999999999988754
No 153
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=95.33 E-value=0.72 Score=54.53 Aligned_cols=112 Identities=12% Similarity=0.079 Sum_probs=78.4
Q ss_pred CCceeEEEEeCC---EEEEEecCCeEEEEeCCCCCc-eeeEcCCCCCCccceeEEEeCCCCCeEEEEeecCCCccEEEEe
Q 002318 21 RGVITCMSAGND---VIVLGTSKGWLIRHDFGAGDS-YDIDLSAGRPGEQSIHKVFVDPGGSHCIATIVGSGGAETFYTH 96 (936)
Q Consensus 21 ~~~i~~l~v~~n---~l~l~~~~g~l~ridl~~~~~-~~~~l~~~~~~~~~i~~i~lDp~G~hlli~~~~~~~g~~~Y~~ 96 (936)
.+.|.+++.+++ .++-|..+|+|..+|..+.+. ..+.-+ ...|..+-+.|.|..++.++. +|....++
T Consensus 147 ~~~v~~v~f~p~~~~~l~s~s~D~~v~lwd~~~~~~~~~l~~H-----~~~V~~v~fspdg~~las~s~---D~~i~lwd 218 (611)
T 1nr0_A 147 ARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEH-----TKFVHSVRYNPDGSLFASTGG---DGTIVLYN 218 (611)
T ss_dssp SSCEEEEEECSSSSCEEEEEETTSCEEEEETTTBEEEEEECCC-----SSCEEEEEECTTSSEEEEEET---TSCEEEEE
T ss_pred CCCceEEEECCCCCeEEEEEeCCCeEEEEECCCCeEeeeeccc-----cCceEEEEECCCCCEEEEEEC---CCcEEEEE
Confidence 356899999875 588899999999999843322 222222 467999999999998888887 89998887
Q ss_pred cCCCC-ceeccC------CCCceEEEEEecCCCCCCCCcceEEEEcCCCcEEEEEEe
Q 002318 97 AKWSK-PRVLSK------LKGLVVNAVAWNRQQITEASTKEIILGTDTGQLHEMAVD 146 (936)
Q Consensus 97 ~~~~k-~k~L~k------lkg~~I~sVaw~~~~~~~~st~~iLiGt~~G~i~e~~i~ 146 (936)
....+ .+.+.. -....|.+|+|+++ ...++.|+.+|.|....+.
T Consensus 219 ~~~g~~~~~~~~~~~~~~~h~~~V~~v~~spd------g~~l~s~s~D~~v~lWd~~ 269 (611)
T 1nr0_A 219 GVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPD------GTKIASASADKTIKIWNVA 269 (611)
T ss_dssp TTTCCEEEECBCTTSSSCSSSSCEEEEEECTT------SSEEEEEETTSEEEEEETT
T ss_pred CCCCcEeeeeccccccccccCCCEEEEEECCC------CCEEEEEeCCCeEEEEeCC
Confidence 54433 223321 12347999999953 2367788888887765553
No 154
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=95.32 E-value=1.3 Score=49.36 Aligned_cols=151 Identities=13% Similarity=0.118 Sum_probs=98.2
Q ss_pred CCceeEEEEeCCEEEEEecCCeEEEEeC-CCCC-ceeeEcCCCCCCccceeEEEeCCCCCeEEEEeecCCCccEEEEecC
Q 002318 21 RGVITCMSAGNDVIVLGTSKGWLIRHDF-GAGD-SYDIDLSAGRPGEQSIHKVFVDPGGSHCIATIVGSGGAETFYTHAK 98 (936)
Q Consensus 21 ~~~i~~l~v~~n~l~l~~~~g~l~ridl-~~~~-~~~~~l~~~~~~~~~i~~i~lDp~G~hlli~~~~~~~g~~~Y~~~~ 98 (936)
...+.|++..+++++.|..+|.+..+|. .+.. +..+.-+ ...+..+...|.|.+++.+.. +|....+...
T Consensus 189 ~~~v~~~s~~~~~l~sgs~d~~i~~~d~~~~~~~~~~~~~h-----~~~~~~~~~~~~g~~l~s~~~---D~~v~i~~~~ 260 (420)
T 4gga_A 189 SARVGSLSWNSYILSSGSRSGHIHHHDVRVAEHHVATLSGH-----SQEVCGLRWAPDGRHLASGGN---DNLVNVWPSA 260 (420)
T ss_dssp SSCEEEEEEETTEEEEEETTSEEEEEETTSSSCEEEEEECC-----SSCEEEEEECTTSSEEEEEET---TSCEEEEESS
T ss_pred CCceEEEeeCCCEEEEEeCCCceeEeeecccceeeEEeccc-----ccceeeeeecCCCCeeeeeec---cccceEEeec
Confidence 4568999999999999999999999999 3333 2333333 467899999999999999888 8888777654
Q ss_pred CCC-----ceeccCCCCceEEEEEecCCCCCCCCcceEEE--EcCCCcEEEEEEecCCcccceeeEEeeeCCCCCceeeE
Q 002318 99 WSK-----PRVLSKLKGLVVNAVAWNRQQITEASTKEIIL--GTDTGQLHEMAVDEKDKREKYIKLLFELNELPEAFMGL 171 (936)
Q Consensus 99 ~~k-----~k~L~klkg~~I~sVaw~~~~~~~~st~~iLi--Gt~~G~i~e~~i~~~~~~~~~~k~v~~l~~~~~~I~gi 171 (936)
..+ .+.... ....|.+++|.+.. ..-+.+ |+.+|.|....+..+ + +...+... .++..+
T Consensus 261 ~~~~~~~~~~~~~~-~~~~V~~~~~~p~~-----~~~la~~~gs~D~~I~iwd~~t~----~-~~~~~~~~---~~v~~~ 326 (420)
T 4gga_A 261 PGEGGWVPLQTFTQ-HQGAVKAVAWCPWQ-----SNVLATGGGTSDRHIRIWNVCSG----A-CLSAVDAH---SQVCSI 326 (420)
T ss_dssp CCSSCSCCSEEECC-CSSCEEEEEECTTC-----TTEEEEEECTTTCEEEEEETTTT----E-EEEEEECS---SCEEEE
T ss_pred cccccceeeeeecc-cCCceeeeeeCCCc-----ccEEEEEeecCCCEEEEEeCCcc----c-cceeeccc---cceeee
Confidence 332 122221 23579999999542 113333 467898877655432 1 11112222 468888
Q ss_pred EEEeeccCCCceEEEEEE--CCCeEEEEe
Q 002318 172 QMETASLSNGTRYYVMAV--TPTRLYSFT 198 (936)
Q Consensus 172 ~~~~~~~~~~~~~~i~as--t~~rly~f~ 198 (936)
.|.. ..+.++.++ ....++-|.
T Consensus 327 ~~~~-----~~~~lv~~sg~~d~~I~iwd 350 (420)
T 4gga_A 327 LWSP-----HYKELISGHGFAQNQLVIWK 350 (420)
T ss_dssp EEET-----TTTEEEEEECTTTCCEEEEE
T ss_pred eecC-----CCCeEEEEEecCCCEEEEEE
Confidence 8762 235666655 346677675
No 155
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=95.23 E-value=0.99 Score=50.47 Aligned_cols=154 Identities=10% Similarity=0.129 Sum_probs=93.8
Q ss_pred CCCceeEEEEeCC--EEEEEecC---CeEEEEeCCCCCceeeEcCCCCCCccceeEEEeCCCCCeEEEEeecCCCccEEE
Q 002318 20 GRGVITCMSAGND--VIVLGTSK---GWLIRHDFGAGDSYDIDLSAGRPGEQSIHKVFVDPGGSHCIATIVGSGGAETFY 94 (936)
Q Consensus 20 ~~~~i~~l~v~~n--~l~l~~~~---g~l~ridl~~~~~~~~~l~~~~~~~~~i~~i~lDp~G~hlli~~~~~~~g~~~Y 94 (936)
..+.+.+++.+.+ .++.+... +.|+.+|+...+...+.-+ ...+..+-.+|.|.+++++....++...|.
T Consensus 177 ~~~~v~~~~~Spdg~~la~~s~~~~~~~i~~~d~~tg~~~~l~~~-----~~~~~~~~~spdg~~la~~~~~~g~~~i~~ 251 (415)
T 2hqs_A 177 SPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVASF-----PRHNGAPAFSPDGSKLAFALSKTGSLNLYV 251 (415)
T ss_dssp ESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEEEEECC-----SSCEEEEEECTTSSEEEEEECTTSSCEEEE
T ss_pred CCCcceeeEEcCCCCEEEEEEecCCCcEEEEEECCCCcEEEeecC-----CCcccCEEEcCCCCEEEEEEecCCCceEEE
Confidence 3456888888854 56666555 3999999933333333222 246888999999999886654212334666
Q ss_pred EecCCCCceeccCCCCceEEEEEecCCCCCCCCcceEEEEcCC-C--cEEEEEEecCCcccceeeEEeeeCCCCCceeeE
Q 002318 95 THAKWSKPRVLSKLKGLVVNAVAWNRQQITEASTKEIILGTDT-G--QLHEMAVDEKDKREKYIKLLFELNELPEAFMGL 171 (936)
Q Consensus 95 ~~~~~~k~k~L~klkg~~I~sVaw~~~~~~~~st~~iLiGt~~-G--~i~e~~i~~~~~~~~~~k~v~~l~~~~~~I~gi 171 (936)
++....+.+.+... +..+.+++|.++ ...++.++.+ | .||...+..+. .+.+ ... ...+.++
T Consensus 252 ~d~~~~~~~~l~~~-~~~~~~~~~spd------g~~l~~~s~~~g~~~i~~~d~~~~~-----~~~l-~~~--~~~~~~~ 316 (415)
T 2hqs_A 252 MDLASGQIRQVTDG-RSNNTEPTWFPD------SQNLAFTSDQAGRPQVYKVNINGGA-----PQRI-TWE--GSQNQDA 316 (415)
T ss_dssp EETTTCCEEECCCC-SSCEEEEEECTT------SSEEEEEECTTSSCEEEEEETTSSC-----CEEC-CCS--SSEEEEE
T ss_pred EECCCCCEEeCcCC-CCcccceEECCC------CCEEEEEECCCCCcEEEEEECCCCC-----EEEE-ecC--CCcccCe
Confidence 77766666666643 357999999843 2357777653 5 56666554321 2222 122 2457777
Q ss_pred EEEeeccCCCceEEEEEECC---CeEEEEe
Q 002318 172 QMETASLSNGTRYYVMAVTP---TRLYSFT 198 (936)
Q Consensus 172 ~~~~~~~~~~~~~~i~ast~---~rly~f~ 198 (936)
.|.. +.+++++++.. ..++.|.
T Consensus 317 ~~sp-----dG~~l~~~~~~~g~~~i~~~d 341 (415)
T 2hqs_A 317 DVSS-----DGKFMVMVSSNGGQQHIAKQD 341 (415)
T ss_dssp EECT-----TSSEEEEEEECSSCEEEEEEE
T ss_pred EECC-----CCCEEEEEECcCCceEEEEEE
Confidence 7752 33567666542 4677665
No 156
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=95.12 E-value=0.51 Score=51.76 Aligned_cols=153 Identities=10% Similarity=0.050 Sum_probs=93.1
Q ss_pred CCceeEEEEeCC--EEEEEecCCeEEEEeC-CCCCceeeEcCCCCCCccceeEEEeCCCCCeEEEEeecCCCcc----EE
Q 002318 21 RGVITCMSAGND--VIVLGTSKGWLIRHDF-GAGDSYDIDLSAGRPGEQSIHKVFVDPGGSHCIATIVGSGGAE----TF 93 (936)
Q Consensus 21 ~~~i~~l~v~~n--~l~l~~~~g~l~ridl-~~~~~~~~~l~~~~~~~~~i~~i~lDp~G~hlli~~~~~~~g~----~~ 93 (936)
.+.|.+++.+++ .++.+. .+.+.+++. .+..+...... .....|..+-..|.|..++.++. ++. ..
T Consensus 176 ~~~V~~v~fspdg~~l~s~s-~~~~~~~~~~~~~~~~~~~~~---~~~~~v~~v~fspdg~~l~~~s~---d~~~~~~i~ 248 (365)
T 4h5i_A 176 RGEVKDLHFSTDGKVVAYIT-GSSLEVISTVTGSCIARKTDF---DKNWSLSKINFIADDTVLIAASL---KKGKGIVLT 248 (365)
T ss_dssp SSCCCEEEECTTSSEEEEEC-SSCEEEEETTTCCEEEEECCC---CTTEEEEEEEEEETTEEEEEEEE---SSSCCEEEE
T ss_pred CCceEEEEEccCCceEEecc-ceeEEEEEeccCcceeeeecC---CCCCCEEEEEEcCCCCEEEEEec---CCcceeEEe
Confidence 456899999865 555555 556777877 44433222111 12467899999999999888876 442 22
Q ss_pred EEecCCCCc-----eeccCCCCceEEEEEecCCCCCCCCcceEEEEcCCCcEEEEEEecCCcccceeeEEeeeCCCCCce
Q 002318 94 YTHAKWSKP-----RVLSKLKGLVVNAVAWNRQQITEASTKEIILGTDTGQLHEMAVDEKDKREKYIKLLFELNELPEAF 168 (936)
Q Consensus 94 Y~~~~~~k~-----k~L~klkg~~I~sVaw~~~~~~~~st~~iLiGt~~G~i~e~~i~~~~~~~~~~k~v~~l~~~~~~I 168 (936)
-+.....+. +.+.. ....|+||+|+++ ..-+..|+.+|.|....+... +.++.+.+-. ..+|
T Consensus 249 ~~~~~~~~~~~~~~~~~~~-~~~~V~~~~~Spd------g~~lasgs~D~~V~iwd~~~~----~~~~~~~~gH--~~~V 315 (365)
T 4h5i_A 249 KISIKSGNTSVLRSKQVTN-RFKGITSMDVDMK------GELAVLASNDNSIALVKLKDL----SMSKIFKQAH--SFAI 315 (365)
T ss_dssp EEEEETTEEEEEEEEEEES-SCSCEEEEEECTT------SCEEEEEETTSCEEEEETTTT----EEEEEETTSS--SSCE
T ss_pred ecccccceecceeeeeecC-CCCCeEeEEECCC------CCceEEEcCCCEEEEEECCCC----cEEEEecCcc--cCCE
Confidence 233222211 22222 2347999999953 236778999999888766432 1222222222 3679
Q ss_pred eeEEEEeeccCCCceEEEEEECCCeEEEEe
Q 002318 169 MGLQMETASLSNGTRYYVMAVTPTRLYSFT 198 (936)
Q Consensus 169 ~gi~~~~~~~~~~~~~~i~ast~~rly~f~ 198 (936)
++|.|.. +.++++-++....+.-|.
T Consensus 316 ~~v~fSp-----dg~~laS~S~D~tvrvw~ 340 (365)
T 4h5i_A 316 TEVTISP-----DSTYVASVSAANTIHIIK 340 (365)
T ss_dssp EEEEECT-----TSCEEEEEETTSEEEEEE
T ss_pred EEEEECC-----CCCEEEEEeCCCeEEEEE
Confidence 9999973 346788777777666663
No 157
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=95.11 E-value=2.6 Score=43.89 Aligned_cols=49 Identities=12% Similarity=0.085 Sum_probs=39.0
Q ss_pred HHHchhhHHHHHHhcCC--------hhhHHHHHHHHHHHHHhcCCHHHHHHHHHHhc
Q 002318 370 VYLDMKEYAAALANCRD--------PLQRDQVYLVQAEAAFATKDFHRAASFYAKIN 418 (936)
Q Consensus 370 ~ll~~~~f~~Al~~~~~--------~~~~~~I~~~~~~~L~~~g~y~~Aa~~y~~~~ 418 (936)
.++..|+|++|+.+.+. +..+..+....|..++..|+|++|...|.+..
T Consensus 14 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 70 (338)
T 3ro2_A 14 RLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDL 70 (338)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHhccHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 46788999999888652 23346788899999999999999999887754
No 158
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=95.10 E-value=0.44 Score=55.54 Aligned_cols=154 Identities=10% Similarity=0.099 Sum_probs=102.3
Q ss_pred CCceeEEEEeCC--EEEEEecCCeEEEEeCCCCCceeeEcCCCCCCccceeEEEeCCCCCeEEEEeecCCCccEEEEecC
Q 002318 21 RGVITCMSAGND--VIVLGTSKGWLIRHDFGAGDSYDIDLSAGRPGEQSIHKVFVDPGGSHCIATIVGSGGAETFYTHAK 98 (936)
Q Consensus 21 ~~~i~~l~v~~n--~l~l~~~~g~l~ridl~~~~~~~~~l~~~~~~~~~i~~i~lDp~G~hlli~~~~~~~g~~~Y~~~~ 98 (936)
.+.|++++-+++ .|+.+..+|.+..||... .+..++ +...-....|+.+...|.|..+++++. +|..-.++..
T Consensus 85 ~~~V~~vawSPdG~~LAs~s~dg~V~iwd~~~-~l~~l~-~~~~~~~~sv~svafSPDG~~LAsgs~---DGtVkIWd~~ 159 (588)
T 2j04_A 85 VCYPRVCKPSPIDDWMAVLSNNGNVSVFKDNK-MLTNLD-SKGNLSSRTYHCFEWNPIESSIVVGNE---DGELQFFSIR 159 (588)
T ss_dssp SCCEEEEEECSSSSCEEEEETTSCEEEEETTE-EEEECC-CSSCSTTTCEEEEEECSSSSCEEEEET---TSEEEEEECC
T ss_pred CCcEEEEEECCCCCEEEEEeCCCcEEEEeCCc-eeeecc-CCCccccccEEEEEEcCCCCEEEEEcC---CCEEEEEECC
Confidence 356889888876 788999999999999722 233333 322111346999999999999999998 9999888766
Q ss_pred CCCc-----eeccCCC------CceEEEEEecCCCCCCCCcceEEEEcCCCcEEEEEEecCCcccc-eeeEEeeeCCCCC
Q 002318 99 WSKP-----RVLSKLK------GLVVNAVAWNRQQITEASTKEIILGTDTGQLHEMAVDEKDKREK-YIKLLFELNELPE 166 (936)
Q Consensus 99 ~~k~-----k~L~klk------g~~I~sVaw~~~~~~~~st~~iLiGt~~G~i~e~~i~~~~~~~~-~~k~v~~l~~~~~ 166 (936)
..+. -.+..++ ...|.+|+|.+ .| ++.|+.++.|+...+..+. .+ ..+.+...+ ..
T Consensus 160 ~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSP-------dg-Laass~D~tVrlWd~~~~~--~~~~~~tL~~~h--~~ 227 (588)
T 2j04_A 160 KNSENTPEFYFESSIRLSDAGSKDWVTHIVWYE-------DV-LVAALSNNSVFSMTVSASS--HQPVSRMIQNAS--RR 227 (588)
T ss_dssp CCTTTCCCCEEEEEEECSCTTCCCCEEEEEEET-------TE-EEEEETTCCEEEECCCSSS--SCCCEEEEECCC--SS
T ss_pred CCccccccceeeeeeecccccccccEEEEEEcC-------Cc-EEEEeCCCeEEEEECCCCc--cccceeeecccc--cC
Confidence 5532 0122221 13799999994 24 8899999999988776542 11 111221122 25
Q ss_pred ceeeEEEEeeccCCCceEEEEEECCCeEEEEec
Q 002318 167 AFMGLQMETASLSNGTRYYVMAVTPTRLYSFTG 199 (936)
Q Consensus 167 ~I~gi~~~~~~~~~~~~~~i~ast~~rly~f~~ 199 (936)
.|.++.|. + +.++.++ +..+.-|.-
T Consensus 228 ~V~svaFs-----g--~~LASa~-~~tIkLWd~ 252 (588)
T 2j04_A 228 KITDLKIV-----D--YKVVLTC-PGYVHKIDL 252 (588)
T ss_dssp CCCCEEEE-----T--TEEEEEC-SSEEEEEET
T ss_pred cEEEEEEE-----C--CEEEEEe-CCeEEEEEC
Confidence 69999996 2 4566554 467777763
No 159
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=95.06 E-value=0.81 Score=51.21 Aligned_cols=133 Identities=14% Similarity=0.112 Sum_probs=83.5
Q ss_pred CeEEEEeCCCCCceeeEcCCCCCCccceeEEEeCCCCCeEEEEeecCCCccEEEEecCCCCceeccCCCCceEEEEEecC
Q 002318 41 GWLIRHDFGAGDSYDIDLSAGRPGEQSIHKVFVDPGGSHCIATIVGSGGAETFYTHAKWSKPRVLSKLKGLVVNAVAWNR 120 (936)
Q Consensus 41 g~l~ridl~~~~~~~~~l~~~~~~~~~i~~i~lDp~G~hlli~~~~~~~g~~~Y~~~~~~k~k~L~klkg~~I~sVaw~~ 120 (936)
+.|..+|+....+..+.-+ ...+..+-..|.|.+++.++...+++..+.++....+.+.+....+ .+.+++|++
T Consensus 159 ~~i~i~d~~g~~~~~l~~~-----~~~v~~~~~Spdg~~la~~s~~~~~~~i~~~d~~tg~~~~l~~~~~-~~~~~~~sp 232 (415)
T 2hqs_A 159 YELRVSDYDGYNQFVVHRS-----PQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVASFPR-HNGAPAFSP 232 (415)
T ss_dssp EEEEEEETTSCSCEEEEEE-----SSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEEEEECCSS-CEEEEEECT
T ss_pred ceEEEEcCCCCCCEEEeCC-----CCcceeeEEcCCCCEEEEEEecCCCcEEEEEECCCCcEEEeecCCC-cccCEEEcC
Confidence 7999999944444444322 3578999999999998888761112366667776666666665443 799999995
Q ss_pred CCCCCCCcceEE-EEcCCCc--EEEEEEecCCcccceeeEEeeeCCCCCceeeEEEEeeccCCCceEEEEEECCC---eE
Q 002318 121 QQITEASTKEII-LGTDTGQ--LHEMAVDEKDKREKYIKLLFELNELPEAFMGLQMETASLSNGTRYYVMAVTPT---RL 194 (936)
Q Consensus 121 ~~~~~~st~~iL-iGt~~G~--i~e~~i~~~~~~~~~~k~v~~l~~~~~~I~gi~~~~~~~~~~~~~~i~ast~~---rl 194 (936)
+ ...++ .++.+|. |+...+..+ ..+.+ ...++.+.++.|.. +.+.+++++... ++
T Consensus 233 d------g~~la~~~~~~g~~~i~~~d~~~~-----~~~~l---~~~~~~~~~~~~sp-----dg~~l~~~s~~~g~~~i 293 (415)
T 2hqs_A 233 D------GSKLAFALSKTGSLNLYVMDLASG-----QIRQV---TDGRSNNTEPTWFP-----DSQNLAFTSDQAGRPQV 293 (415)
T ss_dssp T------SSEEEEEECTTSSCEEEEEETTTC-----CEEEC---CCCSSCEEEEEECT-----TSSEEEEEECTTSSCEE
T ss_pred C------CCEEEEEEecCCCceEEEEECCCC-----CEEeC---cCCCCcccceEECC-----CCCEEEEEECCCCCcEE
Confidence 3 12455 4555554 777665432 12332 22235688888862 336777766532 78
Q ss_pred EEEe
Q 002318 195 YSFT 198 (936)
Q Consensus 195 y~f~ 198 (936)
|.|.
T Consensus 294 ~~~d 297 (415)
T 2hqs_A 294 YKVN 297 (415)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 8775
No 160
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=95.05 E-value=0.0059 Score=50.58 Aligned_cols=38 Identities=18% Similarity=0.495 Sum_probs=29.6
Q ss_pred ecccccccccchhhhhcccccccccccCCCCCCCCEEEEcCCChhHHHhHHHHHhh
Q 002318 830 IDRDEDCGVCRRKILVAGRDYRMARGYASVGPMAPFYVFPCGHAFHAQCLIAHVTQ 885 (936)
Q Consensus 830 i~~~~~C~~C~k~L~~~~~~~~~~~~~~~~~~~~~fvvFpCgH~fH~~CL~~~~~~ 885 (936)
+.....|.+|...+.. +..+-+|||.||..|+...+..
T Consensus 12 ~~~~~~C~IC~~~~~~------------------p~~~~~CgH~fC~~Ci~~~~~~ 49 (72)
T 2djb_A 12 LTPYILCSICKGYLID------------------ATTITECLHTFCKSCIVRHFYY 49 (72)
T ss_dssp CCGGGSCTTTSSCCSS------------------CEECSSSCCEECHHHHHHHHHH
T ss_pred cCCCCCCCCCChHHHC------------------cCEECCCCCHHHHHHHHHHHHc
Confidence 4456789999877665 5554599999999999988754
No 161
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=94.99 E-value=0.0054 Score=50.89 Aligned_cols=36 Identities=22% Similarity=0.602 Sum_probs=28.2
Q ss_pred ecccccccccchhhhhcccccccccccCCCCCCCCEEEEcCCChhHHHhHHHHHh
Q 002318 830 IDRDEDCGVCRRKILVAGRDYRMARGYASVGPMAPFYVFPCGHAFHAQCLIAHVT 884 (936)
Q Consensus 830 i~~~~~C~~C~k~L~~~~~~~~~~~~~~~~~~~~~fvvFpCgH~fH~~CL~~~~~ 884 (936)
+.....|.+|...+.. + ++.+|||.||..|+...+.
T Consensus 17 ~~~~~~C~IC~~~~~~------------------~-~~~~CgH~fC~~Ci~~~~~ 52 (73)
T 2ysl_A 17 LQEEVICPICLDILQK------------------P-VTIDCGHNFCLKCITQIGE 52 (73)
T ss_dssp CCCCCBCTTTCSBCSS------------------E-EECTTCCEEEHHHHHHHCS
T ss_pred CccCCEeccCCcccCC------------------e-EEcCCCChhhHHHHHHHHH
Confidence 3456789999986654 3 3459999999999998875
No 162
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=94.97 E-value=0.5 Score=50.08 Aligned_cols=87 Identities=17% Similarity=0.148 Sum_probs=58.0
Q ss_pred CCEEEEEecCCeEEEEeCCCCCceeeEcCCCCCCccceeEEEeCCCCCeEEEEeecCCCccEEEEecCCCCceeccCC--
Q 002318 31 NDVIVLGTSKGWLIRHDFGAGDSYDIDLSAGRPGEQSIHKVFVDPGGSHCIATIVGSGGAETFYTHAKWSKPRVLSKL-- 108 (936)
Q Consensus 31 ~n~l~l~~~~g~l~ridl~~~~~~~~~l~~~~~~~~~i~~i~lDp~G~hlli~~~~~~~g~~~Y~~~~~~k~k~L~kl-- 108 (936)
+.++|....++.|+++|........+..+ ..+..+.+||.|. +++++. ...+.++....+.+.+...
T Consensus 25 ~~l~~~d~~~~~i~~~d~~~~~~~~~~~~------~~~~~i~~~~dG~-l~v~~~----~~l~~~d~~~g~~~~~~~~~~ 93 (297)
T 3g4e_A 25 NSLLFVDIPAKKVCRWDSFTKQVQRVTMD------APVSSVALRQSGG-YVATIG----TKFCALNWKEQSAVVLATVDN 93 (297)
T ss_dssp TEEEEEETTTTEEEEEETTTCCEEEEECS------SCEEEEEEBTTSS-EEEEET----TEEEEEETTTTEEEEEEECCT
T ss_pred CEEEEEECCCCEEEEEECCCCcEEEEeCC------CceEEEEECCCCC-EEEEEC----CeEEEEECCCCcEEEEEecCC
Confidence 34667778899999999944444445443 4688999999998 777765 4566666555444444322
Q ss_pred --CCceEEEEEecCCCCCCCCcceEEEEc
Q 002318 109 --KGLVVNAVAWNRQQITEASTKEIILGT 135 (936)
Q Consensus 109 --kg~~I~sVaw~~~~~~~~st~~iLiGt 135 (936)
....+..+++++ .|.+.+||
T Consensus 94 ~~~~~~~~di~~d~-------dG~l~~~~ 115 (297)
T 3g4e_A 94 DKKNNRFNDGKVDP-------AGRYFAGT 115 (297)
T ss_dssp TCSSEEEEEEEECT-------TSCEEEEE
T ss_pred CCCCCCCCCEEECC-------CCCEEEec
Confidence 234577888873 24688887
No 163
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=94.93 E-value=0.0053 Score=48.30 Aligned_cols=35 Identities=26% Similarity=0.690 Sum_probs=27.7
Q ss_pred cccccccccchhhhhcccccccccccCCCCCCCCEEEEcCCChhHHHhHHHHHh
Q 002318 831 DRDEDCGVCRRKILVAGRDYRMARGYASVGPMAPFYVFPCGHAFHAQCLIAHVT 884 (936)
Q Consensus 831 ~~~~~C~~C~k~L~~~~~~~~~~~~~~~~~~~~~fvvFpCgH~fH~~CL~~~~~ 884 (936)
.....|.+|...+.. + ++.+|||.||..|+.....
T Consensus 13 ~~~~~C~IC~~~~~~------------------p-~~~~CgH~fC~~Ci~~~~~ 47 (58)
T 2ecj_A 13 QVEASCSVCLEYLKE------------------P-VIIECGHNFCKACITRWWE 47 (58)
T ss_dssp CCCCBCSSSCCBCSS------------------C-CCCSSCCCCCHHHHHHHTT
T ss_pred ccCCCCccCCcccCc------------------c-EeCCCCCccCHHHHHHHHH
Confidence 456789999987765 3 3469999999999998754
No 164
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=94.92 E-value=0.012 Score=47.48 Aligned_cols=37 Identities=24% Similarity=0.521 Sum_probs=28.2
Q ss_pred cccccccch-hhhhcccccccccccCCCCCCCCEEEEcCCChhHHHhHHHHHh
Q 002318 833 DEDCGVCRR-KILVAGRDYRMARGYASVGPMAPFYVFPCGHAFHAQCLIAHVT 884 (936)
Q Consensus 833 ~~~C~~C~k-~L~~~~~~~~~~~~~~~~~~~~~fvvFpCgH~fH~~CL~~~~~ 884 (936)
...|.+|.. .+..+. ..+++.+|||.||..|+.+...
T Consensus 3 ~~~C~IC~~~~~~~~~---------------~~~~~~~CgH~fC~~Ci~~~~~ 40 (65)
T 1g25_A 3 DQGCPRCKTTKYRNPS---------------LKLMVNVCGHTLCESCVDLLFV 40 (65)
T ss_dssp TTCCSTTTTHHHHCSS---------------CCEEECTTCCCEEHHHHHHHHH
T ss_pred CCcCCcCCCCccCCCc---------------cCeecCCCCCHhHHHHHHHHHH
Confidence 467999998 555521 1467789999999999988754
No 165
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=94.91 E-value=1.5 Score=45.04 Aligned_cols=155 Identities=14% Similarity=0.176 Sum_probs=90.9
Q ss_pred CCceeEEEEeCC--EEEEEecCCeEEEEeC-CCCCceeeEcCCCCCCccceeEEEeCCCCCeEEEEeecC-CCccEEEEe
Q 002318 21 RGVITCMSAGND--VIVLGTSKGWLIRHDF-GAGDSYDIDLSAGRPGEQSIHKVFVDPGGSHCIATIVGS-GGAETFYTH 96 (936)
Q Consensus 21 ~~~i~~l~v~~n--~l~l~~~~g~l~ridl-~~~~~~~~~l~~~~~~~~~i~~i~lDp~G~hlli~~~~~-~~g~~~Y~~ 96 (936)
.+.+.+++.+.+ .++.+. +|.|+++|+ .+.+...+.-. .....+..+..+|.|..++++.... +....|.+.
T Consensus 41 ~~~v~~~~~spdg~~l~~~~-~~~i~~~d~~~~~~~~~~~~~---~~~~~~~~~~~spdg~~l~~~~~~~~~~~~l~~~~ 116 (297)
T 2ojh_A 41 PELFEAPNWSPDGKYLLLNS-EGLLYRLSLAGDPSPEKVDTG---FATICNNDHGISPDGALYAISDKVEFGKSAIYLLP 116 (297)
T ss_dssp SSCCEEEEECTTSSEEEEEE-TTEEEEEESSSCCSCEECCCT---TCCCBCSCCEECTTSSEEEEEECTTTSSCEEEEEE
T ss_pred CcceEeeEECCCCCEEEEEc-CCeEEEEeCCCCCCceEeccc---cccccccceEECCCCCEEEEEEeCCCCcceEEEEE
Confidence 456889998854 666654 789999999 52443322211 1135678889999999998888411 135566666
Q ss_pred cCCCCceeccCCCCceEEEEEecCCCCCCCCcceEE-EEcCCCcEEEEEEecCCcccceeeEEeeeCCCCCceeeEEEEe
Q 002318 97 AKWSKPRVLSKLKGLVVNAVAWNRQQITEASTKEII-LGTDTGQLHEMAVDEKDKREKYIKLLFELNELPEAFMGLQMET 175 (936)
Q Consensus 97 ~~~~k~k~L~klkg~~I~sVaw~~~~~~~~st~~iL-iGt~~G~i~e~~i~~~~~~~~~~k~v~~l~~~~~~I~gi~~~~ 175 (936)
....+.+.+... ..+.+++|+++ ...++ .+..+|.+....++...+ ..+. +...++.+.++.|..
T Consensus 117 ~~~~~~~~~~~~--~~~~~~~~spd------g~~l~~~~~~~~~~~l~~~~~~~~---~~~~---~~~~~~~~~~~~~s~ 182 (297)
T 2ojh_A 117 STGGTPRLMTKN--LPSYWHGWSPD------GKSFTYCGIRDQVFDIYSMDIDSG---VETR---LTHGEGRNDGPDYSP 182 (297)
T ss_dssp TTCCCCEECCSS--SSEEEEEECTT------SSEEEEEEEETTEEEEEEEETTTC---CEEE---CCCSSSCEEEEEECT
T ss_pred CCCCceEEeecC--CCccceEECCC------CCEEEEEECCCCceEEEEEECCCC---cceE---cccCCCccccceECC
Confidence 656666666643 35899999843 22455 456677544444432211 1222 222235688888862
Q ss_pred eccCCCceEEEEEEC---CCeEEEEe
Q 002318 176 ASLSNGTRYYVMAVT---PTRLYSFT 198 (936)
Q Consensus 176 ~~~~~~~~~~i~ast---~~rly~f~ 198 (936)
+.+.+++++. ..++|.+.
T Consensus 183 -----dg~~l~~~~~~~~~~~i~~~~ 203 (297)
T 2ojh_A 183 -----DGRWIYFNSSRTGQMQIWRVR 203 (297)
T ss_dssp -----TSSEEEEEECTTSSCEEEEEE
T ss_pred -----CCCEEEEEecCCCCccEEEEC
Confidence 2345666553 34666553
No 166
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=94.87 E-value=0.01 Score=51.15 Aligned_cols=42 Identities=19% Similarity=0.433 Sum_probs=31.6
Q ss_pred ecccccccccchhhhhcccccccccccCCCCCCCCEEEEcCCChhHHHhHHHHHhhc
Q 002318 830 IDRDEDCGVCRRKILVAGRDYRMARGYASVGPMAPFYVFPCGHAFHAQCLIAHVTQC 886 (936)
Q Consensus 830 i~~~~~C~~C~k~L~~~~~~~~~~~~~~~~~~~~~fvvFpCgH~fH~~CL~~~~~~~ 886 (936)
+.....|.+|...+.... ...++.+|||.||..|+...+...
T Consensus 12 ~~~~~~C~IC~~~~~~~~---------------~~~~~~~CgH~fC~~Ci~~~~~~~ 53 (88)
T 2ct2_A 12 LREVLECPICMESFTEEQ---------------LRPKLLHCGHTICRQCLEKLLASS 53 (88)
T ss_dssp CCSCCBCTTTCCBCCTTS---------------SCEEECSSSCEEEHHHHHHHHHHC
T ss_pred ccCCCCCccCCccccccC---------------CCeEECCCCChhhHHHHHHHHHcC
Confidence 345678999998776511 136778999999999999987653
No 167
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=94.77 E-value=0.64 Score=47.84 Aligned_cols=146 Identities=9% Similarity=0.014 Sum_probs=82.2
Q ss_pred ceeEEEEeC--CEEE-EEecCCe--EEEEeCCCCCceeeEcCCCCCCccceeEEEeCCCCCeEEEEeecCCCccEEEEec
Q 002318 23 VITCMSAGN--DVIV-LGTSKGW--LIRHDFGAGDSYDIDLSAGRPGEQSIHKVFVDPGGSHCIATIVGSGGAETFYTHA 97 (936)
Q Consensus 23 ~i~~l~v~~--n~l~-l~~~~g~--l~ridl~~~~~~~~~l~~~~~~~~~i~~i~lDp~G~hlli~~~~~~~g~~~Y~~~ 97 (936)
.+.+++.+. +.++ .+..+|. |+.+|+.......+.-+ ...+..+..+|.|.++++++...+....|-+..
T Consensus 130 ~~~~~~~spdg~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~-----~~~~~~~~~s~dg~~l~~~~~~~~~~~i~~~~~ 204 (297)
T 2ojh_A 130 PSYWHGWSPDGKSFTYCGIRDQVFDIYSMDIDSGVETRLTHG-----EGRNDGPDYSPDGRWIYFNSSRTGQMQIWRVRV 204 (297)
T ss_dssp SEEEEEECTTSSEEEEEEEETTEEEEEEEETTTCCEEECCCS-----SSCEEEEEECTTSSEEEEEECTTSSCEEEEEET
T ss_pred CccceEECCCCCEEEEEECCCCceEEEEEECCCCcceEcccC-----CCccccceECCCCCEEEEEecCCCCccEEEECC
Confidence 367777764 3454 5667775 45555533333222111 357889999999999888764212233444444
Q ss_pred CCCCceeccCCCCceEEEEEecCCCCCCCCcceEEEEcCC-----------CcEEEEEEecCCcccceeeEEeeeCCCCC
Q 002318 98 KWSKPRVLSKLKGLVVNAVAWNRQQITEASTKEIILGTDT-----------GQLHEMAVDEKDKREKYIKLLFELNELPE 166 (936)
Q Consensus 98 ~~~k~k~L~klkg~~I~sVaw~~~~~~~~st~~iLiGt~~-----------G~i~e~~i~~~~~~~~~~k~v~~l~~~~~ 166 (936)
...+.+.+.. .+..+.+++|.++ ...++.++.+ +.|+...+..+ ..+.+..+.+.++
T Consensus 205 ~~~~~~~~~~-~~~~~~~~~~s~d------g~~l~~~~~~~~~~~~~~~~~~~l~~~d~~~~-----~~~~~~~~~~~~~ 272 (297)
T 2ojh_A 205 DGSSVERITD-SAYGDWFPHPSPS------GDKVVFVSYDADVFDHPRDLDVRVQLMDMDGG-----NVETLFDLFGGQG 272 (297)
T ss_dssp TSSCEEECCC-CSEEEEEEEECTT------SSEEEEEEEETTCCSCCSSEEEEEEEEETTSC-----SCEEEEEEEESTT
T ss_pred CCCCcEEEec-CCcccCCeEECCC------CCEEEEEEcCCCCCcccccCceEEEEEecCCC-----CceeeeccCCCCc
Confidence 5555666654 3468999999843 2356777665 34666555432 1233444332235
Q ss_pred ceeeEEEEeeccCCCceEEEEEEC
Q 002318 167 AFMGLQMETASLSNGTRYYVMAVT 190 (936)
Q Consensus 167 ~I~gi~~~~~~~~~~~~~~i~ast 190 (936)
+|.++.|. .+.+.+++++.
T Consensus 273 ~~~~~~~s-----pdg~~l~~~~~ 291 (297)
T 2ojh_A 273 TMNSPNWS-----PDGDEFAYVRY 291 (297)
T ss_dssp TSCSCCBC-----TTSSEEEEEEE
T ss_pred ccccceEC-----CCCCEEEEEEe
Confidence 67877775 22345665544
No 168
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=94.74 E-value=0.8 Score=48.98 Aligned_cols=158 Identities=10% Similarity=0.107 Sum_probs=93.6
Q ss_pred eeEEEEeC--CEEEEEec-CCeEEEEeC-CCCCceeeEcCCCCCC----ccceeEEEeCCCCCeEEEEeecCCCccEEEE
Q 002318 24 ITCMSAGN--DVIVLGTS-KGWLIRHDF-GAGDSYDIDLSAGRPG----EQSIHKVFVDPGGSHCIATIVGSGGAETFYT 95 (936)
Q Consensus 24 i~~l~v~~--n~l~l~~~-~g~l~ridl-~~~~~~~~~l~~~~~~----~~~i~~i~lDp~G~hlli~~~~~~~g~~~Y~ 95 (936)
..+++++. +.++++.. +|.|..+|+ ....+..+.++..... ...+..+.++|.|.+++++.. +.++..+.+
T Consensus 91 ~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~-~~~~~i~~~ 169 (353)
T 3vgz_A 91 PFGATINNTTQTLWFGNTVNSAVTAIDAKTGEVKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGI-GKESVIWVV 169 (353)
T ss_dssp CCSEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEE-SSSCEEEEE
T ss_pred cceEEECCCCCEEEEEecCCCEEEEEeCCCCeeEEEEecCCCccccccCCCCCceEEECCCCCEEEEEec-CCCceEEEE
Confidence 46677765 55666654 689999999 6555566666532110 013688999999999999873 114667777
Q ss_pred ecCCCCceeccCCCCceEEEEEecCCCCCCCCcceEEEEcCCCcEEEEEEecCCcccceeeEEeeeCC--CCCceeeEEE
Q 002318 96 HAKWSKPRVLSKLKGLVVNAVAWNRQQITEASTKEIILGTDTGQLHEMAVDEKDKREKYIKLLFELNE--LPEAFMGLQM 173 (936)
Q Consensus 96 ~~~~~k~k~L~klkg~~I~sVaw~~~~~~~~st~~iLiGt~~G~i~e~~i~~~~~~~~~~k~v~~l~~--~~~~I~gi~~ 173 (936)
+....+........+..+.+++|+++ .+.+.+++.+|.|+...+... + ....+..+. ....+.++.|
T Consensus 170 d~~~~~~~~~~~~~~~~~~~~~~s~d------g~~l~~~~~~~~i~~~d~~~~----~-~~~~~~~~~~~~~~~~~~~~~ 238 (353)
T 3vgz_A 170 DGGNIKLKTAIQNTGKMSTGLALDSE------GKRLYTTNADGELITIDTADN----K-ILSRKKLLDDGKEHFFINISL 238 (353)
T ss_dssp ETTTTEEEEEECCCCTTCCCCEEETT------TTEEEEECTTSEEEEEETTTT----E-EEEEEECCCSSSCCCEEEEEE
T ss_pred cCCCCceEEEecCCCCccceEEECCC------CCEEEEEcCCCeEEEEECCCC----e-EEEEEEcCCCCCCcccceEEE
Confidence 76554433322223556888899842 236888888898886544332 1 122223322 1234677887
Q ss_pred EeeccCCCceEEEEEEC-CCeEEEEe
Q 002318 174 ETASLSNGTRYYVMAVT-PTRLYSFT 198 (936)
Q Consensus 174 ~~~~~~~~~~~~i~ast-~~rly~f~ 198 (936)
.. +.+.++++.. ...++.|.
T Consensus 239 s~-----dg~~l~~~~~~~~~v~~~d 259 (353)
T 3vgz_A 239 DT-----ARQRAFITDSKAAEVLVVD 259 (353)
T ss_dssp ET-----TTTEEEEEESSSSEEEEEE
T ss_pred CC-----CCCEEEEEeCCCCEEEEEE
Confidence 63 2244544444 36777664
No 169
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=94.74 E-value=3.1 Score=45.43 Aligned_cols=50 Identities=14% Similarity=0.131 Sum_probs=39.7
Q ss_pred HHHHchhhHHHHHHhcCC--------hhhHHHHHHHHHHHHHhcCCHHHHHHHHHHhc
Q 002318 369 KVYLDMKEYAAALANCRD--------PLQRDQVYLVQAEAAFATKDFHRAASFYAKIN 418 (936)
Q Consensus 369 ~~ll~~~~f~~Al~~~~~--------~~~~~~I~~~~~~~L~~~g~y~~Aa~~y~~~~ 418 (936)
..++..|+|++|+.+.+. +..+..+....|..++..|+|++|...|.+..
T Consensus 56 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al 113 (411)
T 4a1s_A 56 ERLCNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDL 113 (411)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHhCcHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 346788999999988652 22345788899999999999999999987764
No 170
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=94.72 E-value=0.19 Score=58.65 Aligned_cols=151 Identities=11% Similarity=0.100 Sum_probs=93.5
Q ss_pred CceeEEEEeC-CEEEEEecCCeEEEEeC-CCCCc-eeeEcCCCCCCccceeEE--EeCCCCCe-EEEEeecCCCccEEEE
Q 002318 22 GVITCMSAGN-DVIVLGTSKGWLIRHDF-GAGDS-YDIDLSAGRPGEQSIHKV--FVDPGGSH-CIATIVGSGGAETFYT 95 (936)
Q Consensus 22 ~~i~~l~v~~-n~l~l~~~~g~l~ridl-~~~~~-~~~~l~~~~~~~~~i~~i--~lDp~G~h-lli~~~~~~~g~~~Y~ 95 (936)
+.++|++.++ +.|+.|..+|+|..||+ .+... ..+..+ ...|..| +..|.|.+ ++.++. ||....+
T Consensus 267 ~~v~sv~~s~~~~lasgs~DgtV~lWD~~~~~~~~~~~~~H-----~~~V~sv~~~~s~~g~~~laS~S~---D~tvklW 338 (524)
T 2j04_B 267 SLITTFDFLSPTTVVCGFKNGFVAEFDLTDPEVPSFYDQVH-----DSYILSVSTAYSDFEDTVVSTVAV---DGYFYIF 338 (524)
T ss_dssp TCEEEEEESSSSEEEEEETTSEEEEEETTBCSSCSEEEECS-----SSCEEEEEEECCTTSCCEEEEEET---TSEEEEE
T ss_pred CCEEEEEecCCCeEEEEeCCCEEEEEECCCCCCceEEeecc-----cccEEEEEEEcCCCCCeEEEEecc---CCeEEEE
Confidence 5689999854 68999999999999999 45332 223444 4679998 45777844 455555 8888777
Q ss_pred ecCCCC-ceecc-CCCCceEEEEEecCCCCCCCCcceEEEEcCCCcEEEEEEecCCcccceeeEEeeeCCCCCceeeEEE
Q 002318 96 HAKWSK-PRVLS-KLKGLVVNAVAWNRQQITEASTKEIILGTDTGQLHEMAVDEKDKREKYIKLLFELNELPEAFMGLQM 173 (936)
Q Consensus 96 ~~~~~k-~k~L~-klkg~~I~sVaw~~~~~~~~st~~iLiGt~~G~i~e~~i~~~~~~~~~~k~v~~l~~~~~~I~gi~~ 173 (936)
+....+ .+.+. ...+..|.+|+|++. ...++.|+.++.|....+... +....+. -. .++|++|.|
T Consensus 339 D~~~~~~~~~~~~~~~~~~v~~v~fsp~------~~~l~s~~~d~tv~lwd~~~~----~~~~~l~-gH--~~~V~sva~ 405 (524)
T 2j04_B 339 NPKDIATTKTTVSRFRGSNLVPVVYCPQ------IYSYIYSDGASSLRAVPSRAA----FAVHPLV-SR--ETTITAIGV 405 (524)
T ss_dssp CGGGHHHHCEEEEECSCCSCCCEEEETT------TTEEEEECSSSEEEEEETTCT----TCCEEEE-EC--SSCEEEEEC
T ss_pred ECCCCCcccccccccccCcccceEeCCC------cCeEEEeCCCCcEEEEECccc----ccceeee-cC--CCceEEEEe
Confidence 764432 11221 122235889999953 235777888887655433221 1122322 23 267999998
Q ss_pred EeeccCCCceEEEEEECCCeEEEEe
Q 002318 174 ETASLSNGTRYYVMAVTPTRLYSFT 198 (936)
Q Consensus 174 ~~~~~~~~~~~~i~ast~~rly~f~ 198 (936)
.. ..+.++-++....+.-|.
T Consensus 406 Sp-----~g~~l~Sgs~Dgtv~lwd 425 (524)
T 2j04_B 406 SR-----LHPMVLAGSADGSLIITN 425 (524)
T ss_dssp CS-----SCCBCEEEETTTEEECCB
T ss_pred CC-----CCCeEEEEECCCEEEEEe
Confidence 63 224666667777777564
No 171
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=94.67 E-value=0.0082 Score=49.56 Aligned_cols=34 Identities=24% Similarity=0.625 Sum_probs=26.7
Q ss_pred ccccccccchhhhhcccccccccccCCCCCCCCEEEEcCCChhHHHhHHHHHh
Q 002318 832 RDEDCGVCRRKILVAGRDYRMARGYASVGPMAPFYVFPCGHAFHAQCLIAHVT 884 (936)
Q Consensus 832 ~~~~C~~C~k~L~~~~~~~~~~~~~~~~~~~~~fvvFpCgH~fH~~CL~~~~~ 884 (936)
....|.+|...+.. + ++.+|||.||..|+...+.
T Consensus 14 ~~~~C~IC~~~~~~------------------~-~~~~CgH~fC~~Ci~~~~~ 47 (71)
T 2d8t_A 14 TVPECAICLQTCVH------------------P-VSLPCKHVFCYLCVKGASW 47 (71)
T ss_dssp SCCBCSSSSSBCSS------------------E-EEETTTEEEEHHHHHHCTT
T ss_pred CCCCCccCCcccCC------------------C-EEccCCCHHHHHHHHHHHH
Confidence 45689999876544 3 5679999999999987654
No 172
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=94.67 E-value=1.8 Score=48.13 Aligned_cols=243 Identities=12% Similarity=0.080 Sum_probs=118.5
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHhcC--C---CChHHHHHHhcCcChHHHHHHHHHHHhhcccCchhHHHHHHHHH
Q 002318 390 RDQVYLVQAEAAFATKDFHRAASFYAKINY--I---LSFEEITLKFISVSEQDALRTFLLRKLDNLAKDDKCQITMISTW 464 (936)
Q Consensus 390 ~~~I~~~~~~~L~~~g~y~~Aa~~y~~~~~--~---~~~E~v~lkFl~~~~~~~L~~YL~~~l~~l~~~~~~~~~lL~~W 464 (936)
-.......|..++..|+|++|...|.+... . ..|-.....+...++.+.-..++..-+..-+.+... ..-
T Consensus 25 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~-----~~~ 99 (450)
T 2y4t_A 25 DVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDFTAA-----RLQ 99 (450)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH-----HHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHH-----HHH
Confidence 345677789999999999999999988651 1 112223333444555554444444434332222111 111
Q ss_pred HHHHHHHHHhhhhcccchhhccchHHHHHHHHHHHHHHhcccccCCH---HH---------------HHHHHHHcCChhH
Q 002318 465 ATELYLDKINRLLLEDDTALENRSSEYQSIMREFRAFLSDCKDVLDE---AT---------------TMKLLESYGRVEE 526 (936)
Q Consensus 465 l~ely~~~l~~~~~e~~~~~~~~~~~~~~~~~~l~~fl~~~~~~ld~---~t---------------v~~ll~~~g~~e~ 526 (936)
+..+|.. ... +.+...-|++.+....+ +. .. ....+...|+.++
T Consensus 100 l~~~~~~-~g~---------------~~~A~~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 161 (450)
T 2y4t_A 100 RGHLLLK-QGK---------------LDEAEDDFKKVLKSNPS--ENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTA 161 (450)
T ss_dssp HHHHHHH-TTC---------------HHHHHHHHHHHHTSCCC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHHHH-cCC---------------HHHHHHHHHHHHhcCCC--ChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHH
Confidence 2233321 111 11122223333321110 00 11 0123455677777
Q ss_pred HHHHHHhh--------hhHHHHHHHHHhcccHHHHHHHHhCC----CCchhhHHhhHHHHHh-HChHHHHHHHHccCCCC
Q 002318 527 LVFFASLK--------EQHEIVVHHYIQQGEAKKALQMLRKP----AVPIDLQYKFAPDLIM-LDAYETVESWMTTNNLN 593 (936)
Q Consensus 527 ~l~~a~~~--------~dy~~ll~~yi~~~~~~~AL~~L~~~----~d~~~li~k~~~~Ll~-~~p~~ti~ll~~~~~ld 593 (936)
++.+.+.. .-+..+...|...|++++|++.+.+. ++....++..+..+.. .+.++++..+.+...++
T Consensus 162 A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 241 (450)
T 2y4t_A 162 AIAFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHELSLSEVRECLKLD 241 (450)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhCCCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 77766643 12445667888888988888887653 2223445555555443 45666666664332233
Q ss_pred CCcchh--Hh-------------hhcCCCCCCCCChHHHHHHHHHHHhhcCCCC---HhHHHHHHHHhhcCCChHHHHHH
Q 002318 594 PRKLIP--AM-------------MRYSSEPHAKNETHEVIKYLEFCVHRLHNED---PGVHNLLLSLYAKQEDDSALLRF 655 (936)
Q Consensus 594 ~~~li~--~L-------------~~~~~~~~~~~~~~~~~~YLe~li~~~~~~~---~~~hn~ll~Ly~~~~~~~~Ll~f 655 (936)
|..... .+ ..+.. ......++.+++..+...+... ...+..+..+|.+.++.++.+.+
T Consensus 242 p~~~~~~~~~~~~~~~~~~~~~~~~~~~----~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 317 (450)
T 2y4t_A 242 QDHKRCFAHYKQVKKLNKLIESAEELIR----DGRYTDATSKYESVMKTEPSIAEYTVRSKERICHCFSKDEKPVEAIRV 317 (450)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHHHHHHHH----HTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHTTTCHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHCCCHHHHHHH
Confidence 332110 00 00000 0134557777777766544321 12445555566665545555555
Q ss_pred HHHh
Q 002318 656 LQCK 659 (936)
Q Consensus 656 L~~~ 659 (936)
++..
T Consensus 318 ~~~a 321 (450)
T 2y4t_A 318 CSEV 321 (450)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5543
No 173
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Probab=94.66 E-value=0.014 Score=52.35 Aligned_cols=53 Identities=21% Similarity=0.412 Sum_probs=32.5
Q ss_pred ccccccccchhhhhcccccccccccCCCCCCCCEEEEcCCChhHHHhHHHHHhh
Q 002318 832 RDEDCGVCRRKILVAGRDYRMARGYASVGPMAPFYVFPCGHAFHAQCLIAHVTQ 885 (936)
Q Consensus 832 ~~~~C~~C~k~L~~~~~~~~~~~~~~~~~~~~~fvvFpCgH~fH~~CL~~~~~~ 885 (936)
....|++|...+....+.- ..+.....+...+.+.-+|||.||..|+...+..
T Consensus 36 ~~d~CaIC~~~~~~~c~~C-~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~ 88 (106)
T 3dpl_R 36 VVDNCAICRNHIMDLCIEC-QANQASATSEECTVAWGVCNHAFHFHCISRWLKT 88 (106)
T ss_dssp CSCCCSSSCSCTTSCCTTH-HHHTTCC---CCCEEEETTSCEEEHHHHHHHHTT
T ss_pred CCCCCccCChhHhCcCchh-hccccccCCccceEeecccCcEECHHHHHHHHHc
Confidence 4678999998877521100 0000011222346777899999999999988754
No 174
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=94.66 E-value=1 Score=47.95 Aligned_cols=81 Identities=21% Similarity=0.166 Sum_probs=44.8
Q ss_pred HHHHchhhHHHHHHhcC-----Chh--hHHHHH------------HHHHHHHHhcCCHHHHHHHHHHhc--CCC---ChH
Q 002318 369 KVYLDMKEYAAALANCR-----DPL--QRDQVY------------LVQAEAAFATKDFHRAASFYAKIN--YIL---SFE 424 (936)
Q Consensus 369 ~~ll~~~~f~~Al~~~~-----~~~--~~~~I~------------~~~~~~L~~~g~y~~Aa~~y~~~~--~~~---~~E 424 (936)
.++...|+|++|++..+ .|. ....+. ...|..++..|+|++|...|.+.. ... .+.
T Consensus 79 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 158 (359)
T 3ieg_A 79 HLLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVCVWDAELRE 158 (359)
T ss_dssp HHHHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HHHHHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCchHHHH
Confidence 34667788888887754 230 111122 223788888888888888887754 111 122
Q ss_pred HHHHHhcCcChHHHHHHHHHHHhhc
Q 002318 425 EITLKFISVSEQDALRTFLLRKLDN 449 (936)
Q Consensus 425 ~v~lkFl~~~~~~~L~~YL~~~l~~ 449 (936)
....-+...++.+.-..++..-+..
T Consensus 159 ~~~~~~~~~~~~~~A~~~~~~~~~~ 183 (359)
T 3ieg_A 159 LRAECFIKEGEPRKAISDLKAASKL 183 (359)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 3333344555555555555554443
No 175
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=94.56 E-value=0.29 Score=51.66 Aligned_cols=78 Identities=13% Similarity=-0.115 Sum_probs=48.8
Q ss_pred hHHHHHHHHHHHhhcCCCCHhHHHHHHHHhhcCCChHHHHHHHHHhhCCCCCCCCcccCChHHHHHHHHhcCcceeeehh
Q 002318 614 THEVIKYLEFCVHRLHNEDPGVHNLLLSLYAKQEDDSALLRFLQCKFGKGRENGPEFFYDPKYALRLCLKEKRMRACVHI 693 (936)
Q Consensus 614 ~~~~~~YLe~li~~~~~~~~~~hn~ll~Ly~~~~~~~~Ll~fL~~~~~~~~~~~~~~~yd~~~aLrlc~~~~~~~~~v~L 693 (936)
...++.+++..+...+. +..++..+-..|...++.++.+..++.. ...+++.+-- +-....+
T Consensus 20 ~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~~~~~~A~~~~~~a----------l~~~p~~~~~-------~~~lg~~ 81 (281)
T 2c2l_A 20 YPEAAACYGRAITRNPL-VAVYYTNRALCYLKMQQPEQALADCRRA----------LELDGQSVKA-------HFFLGQC 81 (281)
T ss_dssp HHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHTTCHHHHHHHHHHH----------TTSCTTCHHH-------HHHHHHH
T ss_pred HHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHhcCHHHHHHHHHHH----------HHhCCCCHHH-------HHHHHHH
Confidence 45688888888776553 4666666666777766566777777765 1122222111 1123456
Q ss_pred hhccccHHHHHHHHHh
Q 002318 694 YGMMSMHEEAVALALQ 709 (936)
Q Consensus 694 ~~~~g~~~eAl~l~l~ 709 (936)
|.++|++++|+..+-.
T Consensus 82 ~~~~g~~~~A~~~~~~ 97 (281)
T 2c2l_A 82 QLEMESYDEAIANLQR 97 (281)
T ss_dssp HHHTTCHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHH
Confidence 7889999999987654
No 176
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=94.56 E-value=1.9 Score=45.22 Aligned_cols=79 Identities=14% Similarity=0.053 Sum_probs=43.1
Q ss_pred hHHHHHHHHHHHhhcC--------CCCHhHHHHHHHHhhcCCChHHHHHHHHHhhCCCCCCCCcccCChHHHHHHHHhcC
Q 002318 614 THEVIKYLEFCVHRLH--------NEDPGVHNLLLSLYAKQEDDSALLRFLQCKFGKGRENGPEFFYDPKYALRLCLKEK 685 (936)
Q Consensus 614 ~~~~~~YLe~li~~~~--------~~~~~~hn~ll~Ly~~~~~~~~Ll~fL~~~~~~~~~~~~~~~yd~~~aLrlc~~~~ 685 (936)
...++.+++..+...+ ......+..+..+|...++.++-+.+++..-.. ..-+.. +
T Consensus 209 ~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~-------~~~~~~-~-------- 272 (330)
T 3hym_B 209 WKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVL-------IPQNAS-T-------- 272 (330)
T ss_dssp HHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-------STTCSH-H--------
T ss_pred HHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhh-------CccchH-H--------
Confidence 4567777777765431 223456777777777766556666666554100 000111 1
Q ss_pred cceeeehhhhccccHHHHHHHHHh
Q 002318 686 RMRACVHIYGMMSMHEEAVALALQ 709 (936)
Q Consensus 686 ~~~~~v~L~~~~g~~~eAl~l~l~ 709 (936)
+.....+|.++|++++|+..+-.
T Consensus 273 -~~~la~~~~~~g~~~~A~~~~~~ 295 (330)
T 3hym_B 273 -YSAIGYIHSLMGNFENAVDYFHT 295 (330)
T ss_dssp -HHHHHHHHHHHTCHHHHHHHHHT
T ss_pred -HHHHHHHHHHhccHHHHHHHHHH
Confidence 11234566778888887776554
No 177
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=94.43 E-value=0.8 Score=51.75 Aligned_cols=100 Identities=12% Similarity=0.079 Sum_probs=69.0
Q ss_pred CceeEEEEeC---CEEEEEecCCeEEEEeC-CCCCceeeEcCCCCCCccceeEEEeCCCCCeEEEEeecCCCccEEEEec
Q 002318 22 GVITCMSAGN---DVIVLGTSKGWLIRHDF-GAGDSYDIDLSAGRPGEQSIHKVFVDPGGSHCIATIVGSGGAETFYTHA 97 (936)
Q Consensus 22 ~~i~~l~v~~---n~l~l~~~~g~l~ridl-~~~~~~~~~l~~~~~~~~~i~~i~lDp~G~hlli~~~~~~~g~~~Y~~~ 97 (936)
+.|++++.+. ++++.|..+|+|..||+ ....+....-+ ...|..+-.+|.|.++++++. +|....+..
T Consensus 150 ~~V~~v~~~p~~~~~las~s~Dg~v~iwD~~~~~~~~~~~~~-----~~~v~~v~wspdg~~lasgs~---dg~v~iwd~ 221 (434)
T 2oit_A 150 GMVIDMKWNPTVPSMVAVCLADGSIAVLQVTETVKVCATLPS-----TVAVTSVCWSPKGKQLAVGKQ---NGTVVQYLP 221 (434)
T ss_dssp GSEEEEEECSSCTTEEEEEETTSCEEEEEESSSEEEEEEECG-----GGCEEEEEECTTSSCEEEEET---TSCEEEECT
T ss_pred CceEEEEECCCCCCEEEEEECCCeEEEEEcCCCcceeeccCC-----CCceeEEEEcCCCCEEEEEcC---CCcEEEEcc
Confidence 5699999974 58899999999999999 44222111111 367999999999999999988 899887776
Q ss_pred CCCCceeccCCC------CceEEEEEecCCCCCCCCcceEEEEcC
Q 002318 98 KWSKPRVLSKLK------GLVVNAVAWNRQQITEASTKEIILGTD 136 (936)
Q Consensus 98 ~~~k~k~L~klk------g~~I~sVaw~~~~~~~~st~~iLiGt~ 136 (936)
.....+.+..-. ...|.+|+|++ .+.++++..
T Consensus 222 ~~~~~~~~~~~~~~~~~~~~~v~~v~w~~-------~~~~l~~~~ 259 (434)
T 2oit_A 222 TLQEKKVIPCPPFYESDHPVRVLDVLWIG-------TYVFAIVYA 259 (434)
T ss_dssp TCCEEEEECCCTTCCTTSCEEEEEEEEEE-------TTEEEEEEE
T ss_pred CCcccccccCCcccCCCCceeEEEEEEec-------CceEEEEEc
Confidence 522222222111 13899999983 236776544
No 178
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=94.43 E-value=1.1 Score=47.10 Aligned_cols=156 Identities=13% Similarity=0.044 Sum_probs=94.8
Q ss_pred ceeEEEEe--CCEEEEEecCCeEEEEeC-CCCCceeeEcCCCCCCccceeEEEeCCCCCeEEEEeecCCCccEEEEecCC
Q 002318 23 VITCMSAG--NDVIVLGTSKGWLIRHDF-GAGDSYDIDLSAGRPGEQSIHKVFVDPGGSHCIATIVGSGGAETFYTHAKW 99 (936)
Q Consensus 23 ~i~~l~v~--~n~l~l~~~~g~l~ridl-~~~~~~~~~l~~~~~~~~~i~~i~lDp~G~hlli~~~~~~~g~~~Y~~~~~ 99 (936)
.+.+++.. ++.++.|..+|.|..+|+ .+.......... ......|..+...|.+..++.....+.++....++...
T Consensus 152 ~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~ 230 (318)
T 4ggc_A 152 EVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTF-TQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCS 230 (318)
T ss_dssp CEEEEEECTTSSEEEEEETTSCEEEEESSCBTTBSCCSEEE-CCCCSCEEEEEECTTSTTEEEEEECTTTCEEEEEETTT
T ss_pred ceEEEEEcCCCCEEEEEecCcceeEEECCCCcccccceeee-cccCCceEEEEecCCCCcEEEEEecCCCCEEEEEeccc
Confidence 45555544 458888999999999999 433322111111 11235788888888888877665422245555555544
Q ss_pred CCceeccCCCCceEEEEEecCCCCCCCCcceEEEE--cCCCcEEEEEEecCCcccceeeEEeeeCCCCCceeeEEEEeec
Q 002318 100 SKPRVLSKLKGLVVNAVAWNRQQITEASTKEIILG--TDTGQLHEMAVDEKDKREKYIKLLFELNELPEAFMGLQMETAS 177 (936)
Q Consensus 100 ~k~k~L~klkg~~I~sVaw~~~~~~~~st~~iLiG--t~~G~i~e~~i~~~~~~~~~~k~v~~l~~~~~~I~gi~~~~~~ 177 (936)
.+...... ....+.+++|.+. ...++++ +.+|.|....+... +.+..+.+-.++|+++.|..
T Consensus 231 ~~~~~~~~-~~~~v~~~~~~~~------~~~~~~~sg~~d~~i~iwd~~~~-------~~~~~l~gH~~~V~~l~~sp-- 294 (318)
T 4ggc_A 231 GACLSAVD-AHSQVCSILWSPH------YKELISGHGFAQNQLVIWKYPTM-------AKVAELKGHTSRVLSLTMSP-- 294 (318)
T ss_dssp CCEEEEEE-CSSCEEEEEEETT------TTEEEEEECTTTCCEEEEETTTC-------CEEEEECCCSSCEEEEEECT--
T ss_pred cccccccc-ceeeeeeeeeccc------ccceEEEEEcCCCEEEEEECCCC-------cEEEEEcCCCCCEEEEEEcC--
Confidence 43332222 4568999999843 2356665 47899887766432 23334443236799999962
Q ss_pred cCCCceEEEEEECCCeEEEEe
Q 002318 178 LSNGTRYYVMAVTPTRLYSFT 198 (936)
Q Consensus 178 ~~~~~~~~i~ast~~rly~f~ 198 (936)
+.++++-++....+.-|.
T Consensus 295 ---dg~~l~S~s~D~~v~iWd 312 (318)
T 4ggc_A 295 ---DGATVASAAADETLRLWR 312 (318)
T ss_dssp ---TSSCEEEEETTTEEEEEC
T ss_pred ---CCCEEEEEecCCeEEEEE
Confidence 235677777777787774
No 179
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=94.42 E-value=1.1 Score=47.05 Aligned_cols=249 Identities=10% Similarity=-0.055 Sum_probs=123.6
Q ss_pred HHHHchhhHHHHHHhcCCh----hhHHHHHHHHHHHHHhcCCHHHHHHHHHHhc--C---CCChHHHHHHhcCcC-hHHH
Q 002318 369 KVYLDMKEYAAALANCRDP----LQRDQVYLVQAEAAFATKDFHRAASFYAKIN--Y---ILSFEEITLKFISVS-EQDA 438 (936)
Q Consensus 369 ~~ll~~~~f~~Al~~~~~~----~~~~~I~~~~~~~L~~~g~y~~Aa~~y~~~~--~---~~~~E~v~lkFl~~~-~~~~ 438 (936)
..++..|+|++|+++++.- .....+...++..++..|++++|...+.+.. . ...|-....-+...+ +.+.
T Consensus 30 ~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 109 (330)
T 3hym_B 30 ERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKANELFYLSHKLVDLYPSNPVSWFAVGCYYLMVGHKNEH 109 (330)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHHHHHHHHHSCSCHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhhhhHHH
Confidence 4577889999999987631 1223455567777888899999998887764 1 112333333444555 5665
Q ss_pred HHHHHHHHhhcccCchhHHHHHHHHHHHHHHHHHHhhhhcccchhhccchHHHHHHHHHHHHHHhcccccCC-HHHHHHH
Q 002318 439 LRTFLLRKLDNLAKDDKCQITMISTWATELYLDKINRLLLEDDTALENRSSEYQSIMREFRAFLSDCKDVLD-EATTMKL 517 (936)
Q Consensus 439 L~~YL~~~l~~l~~~~~~~~~lL~~Wl~ely~~~l~~~~~e~~~~~~~~~~~~~~~~~~l~~fl~~~~~~ld-~~tv~~l 517 (936)
-..++..-+..-+.+... ...+..+|... .. +.+....+++.+....+... .-.+..+
T Consensus 110 A~~~~~~a~~~~~~~~~~-----~~~l~~~~~~~-~~---------------~~~A~~~~~~a~~~~~~~~~~~~~l~~~ 168 (330)
T 3hym_B 110 ARRYLSKATTLEKTYGPA-----WIAYGHSFAVE-SE---------------HDQAMAAYFTAAQLMKGCHLPMLYIGLE 168 (330)
T ss_dssp HHHHHHHHHTTCTTCTHH-----HHHHHHHHHHH-TC---------------HHHHHHHHHHHHHHTTTCSHHHHHHHHH
T ss_pred HHHHHHHHHHhCCccHHH-----HHHHHHHHHHc-cC---------------HHHHHHHHHHHHHhccccHHHHHHHHHH
Confidence 555555545433332221 22333444321 11 11112222222222111100 0112234
Q ss_pred HHHcCChhHHHHHHHhh--------hhHHHHHHHHHhcccHHHHHHHHhCC-------------CCchhhHHhhHHHHHh
Q 002318 518 LESYGRVEELVFFASLK--------EQHEIVVHHYIQQGEAKKALQMLRKP-------------AVPIDLQYKFAPDLIM 576 (936)
Q Consensus 518 l~~~g~~e~~l~~a~~~--------~dy~~ll~~yi~~~~~~~AL~~L~~~-------------~d~~~li~k~~~~Ll~ 576 (936)
+...|+.++++.+.+.. .-+..+...|...|+|++|++.+.+. +.....+...+..+..
T Consensus 169 ~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~ 248 (330)
T 3hym_B 169 YGLTNNSKLAERFFSQALSIAPEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRK 248 (330)
T ss_dssp HHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHH
Confidence 45567777766665542 12344566777888888888776532 1112344455555543
Q ss_pred -HChHHHHHHHHccCCCCCCcch--hHhh-hcCCCCCCCCChHHHHHHHHHHHhhcCCCCHhHHHHHHHHh
Q 002318 577 -LDAYETVESWMTTNNLNPRKLI--PAMM-RYSSEPHAKNETHEVIKYLEFCVHRLHNEDPGVHNLLLSLY 643 (936)
Q Consensus 577 -~~p~~ti~ll~~~~~ld~~~li--~~L~-~~~~~~~~~~~~~~~~~YLe~li~~~~~~~~~~hn~ll~Ly 643 (936)
...++++..+.+...++|.... -.+- -+.. ......+..+++..+...+. ++..+..+...|
T Consensus 249 ~g~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~ 314 (330)
T 3hym_B 249 LKKYAEALDYHRQALVLIPQNASTYSAIGYIHSL----MGNFENAVDYFHTALGLRRD-DTFSVTMLGHCI 314 (330)
T ss_dssp TTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHH----HTCHHHHHHHHHTTTTTCSC-CHHHHHHHHHHH
T ss_pred hcCHHHHHHHHHHHHhhCccchHHHHHHHHHHHH----hccHHHHHHHHHHHHccCCC-chHHHHHHHHHH
Confidence 4556666666433222333211 1110 0000 01346688888887765543 455555555444
No 180
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=94.39 E-value=0.011 Score=49.75 Aligned_cols=37 Identities=8% Similarity=0.226 Sum_probs=29.2
Q ss_pred ecccccccccchhhhhcccccccccccCCCCCCCCEEEEcCCChhHHHhHHHHHhh
Q 002318 830 IDRDEDCGVCRRKILVAGRDYRMARGYASVGPMAPFYVFPCGHAFHAQCLIAHVTQ 885 (936)
Q Consensus 830 i~~~~~C~~C~k~L~~~~~~~~~~~~~~~~~~~~~fvvFpCgH~fH~~CL~~~~~~ 885 (936)
+...-.|.+|...+.. | ++.+|||.|+..|+...+..
T Consensus 5 ~~~~~~C~IC~~~~~~------------------P-v~~~CgH~fc~~Ci~~~~~~ 41 (78)
T 1t1h_A 5 FPEYFRCPISLELMKD------------------P-VIVSTGQTYERSSIQKWLDA 41 (78)
T ss_dssp CSSSSSCTTTSCCCSS------------------E-EEETTTEEEEHHHHHHHHTT
T ss_pred CcccCCCCCccccccC------------------C-EEcCCCCeecHHHHHHHHHH
Confidence 4456789999987655 4 44599999999999998854
No 181
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=94.25 E-value=4 Score=42.87 Aligned_cols=141 Identities=12% Similarity=0.026 Sum_probs=82.3
Q ss_pred CEEEEEecCCeEEEEeC-CCCCceeeEcCCCCCCccceeEEEeCCCCCeEEEEeecCCCccEEEEecCCCCce-eccCCC
Q 002318 32 DVIVLGTSKGWLIRHDF-GAGDSYDIDLSAGRPGEQSIHKVFVDPGGSHCIATIVGSGGAETFYTHAKWSKPR-VLSKLK 109 (936)
Q Consensus 32 n~l~l~~~~g~l~ridl-~~~~~~~~~l~~~~~~~~~i~~i~lDp~G~hlli~~~~~~~g~~~Y~~~~~~k~k-~L~klk 109 (936)
++++.+..+|.|..+|+ ....+..+.++... ..+..+-++|.|.+++++.. .++..+-+.....+.. .+.--.
T Consensus 2 ~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~---~~~~~~~~s~dg~~l~v~~~--~~~~v~~~d~~~~~~~~~~~~~~ 76 (337)
T 1pby_B 2 DYILAPARPDKLVVIDTEKMAVDKVITIADAG---PTPMVPMVAPGGRIAYATVN--KSESLVKIDLVTGETLGRIDLST 76 (337)
T ss_dssp EEEEEEETTTEEEEEETTTTEEEEEEECTTCT---TCCCCEEECTTSSEEEEEET--TTTEEEEEETTTCCEEEEEECCB
T ss_pred cEEEEcCCCCeEEEEECCCCcEEEEEEcCCCC---CCccceEEcCCCCEEEEEeC--CCCeEEEEECCCCCeEeeEEcCC
Confidence 46778889999999999 55555556655210 04678899999999888765 1466766765544432 222100
Q ss_pred ----CceEEEEEecCCCCCCCCcceEEEEc------------CCCcEEEEEEecCCcccceeeEEeeeCCCCCceeeEEE
Q 002318 110 ----GLVVNAVAWNRQQITEASTKEIILGT------------DTGQLHEMAVDEKDKREKYIKLLFELNELPEAFMGLQM 173 (936)
Q Consensus 110 ----g~~I~sVaw~~~~~~~~st~~iLiGt------------~~G~i~e~~i~~~~~~~~~~k~v~~l~~~~~~I~gi~~ 173 (936)
+..+.+++|+++ .+.+.++. .++.|+...+... + ....+..+ ..+.++.|
T Consensus 77 ~~~~~~~~~~~~~s~d------g~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~----~-~~~~~~~~---~~~~~~~~ 142 (337)
T 1pby_B 77 PEERVKSLFGAALSPD------GKTLAIYESPVRLELTHFEVQPTRVALYDAETL----S-RRKAFEAP---RQITMLAW 142 (337)
T ss_dssp TTEEEECTTCEEECTT------SSEEEEEEEEEEECSSCEEECCCEEEEEETTTT----E-EEEEEECC---SSCCCEEE
T ss_pred cccccccccceEECCC------CCEEEEEecccccccccccccCceEEEEECCCC----c-EEEEEeCC---CCcceeEE
Confidence 114667888842 22566664 4577777665432 1 11222333 34777877
Q ss_pred EeeccCCCceEEEEEECCCeEEEEe
Q 002318 174 ETASLSNGTRYYVMAVTPTRLYSFT 198 (936)
Q Consensus 174 ~~~~~~~~~~~~i~ast~~rly~f~ 198 (936)
.. +.+.++++ ...++.|.
T Consensus 143 s~-----dg~~l~~~--~~~i~~~d 160 (337)
T 1pby_B 143 AR-----DGSKLYGL--GRDLHVMD 160 (337)
T ss_dssp CT-----TSSCEEEE--SSSEEEEE
T ss_pred CC-----CCCEEEEe--CCeEEEEE
Confidence 52 22445444 45677665
No 182
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=94.24 E-value=0.011 Score=49.18 Aligned_cols=37 Identities=22% Similarity=0.641 Sum_probs=29.0
Q ss_pred ecccccccccchhhhhcccccccccccCCCCCCCCEEEEc-CCChhHHHhHHHHHhh
Q 002318 830 IDRDEDCGVCRRKILVAGRDYRMARGYASVGPMAPFYVFP-CGHAFHAQCLIAHVTQ 885 (936)
Q Consensus 830 i~~~~~C~~C~k~L~~~~~~~~~~~~~~~~~~~~~fvvFp-CgH~fH~~CL~~~~~~ 885 (936)
+.....|.+|...+.. +. +.+ |||.||..|+...+..
T Consensus 12 ~~~~~~C~IC~~~~~~------------------p~-~~~~CgH~fC~~Ci~~~~~~ 49 (74)
T 2yur_A 12 IPDELLCLICKDIMTD------------------AV-VIPCCGNSYCDECIRTALLE 49 (74)
T ss_dssp SCGGGSCSSSCCCCTT------------------CE-ECSSSCCEECTTHHHHHHHH
T ss_pred CCCCCCCcCCChHHhC------------------Ce-EcCCCCCHHHHHHHHHHHHh
Confidence 3456789999876655 44 478 9999999999988864
No 183
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=94.22 E-value=0.012 Score=53.13 Aligned_cols=37 Identities=16% Similarity=0.450 Sum_probs=28.8
Q ss_pred cccccccccchhhhhcccccccccccCCCCCCCCEEEEcCCChhHHHhHHHHHhh
Q 002318 831 DRDEDCGVCRRKILVAGRDYRMARGYASVGPMAPFYVFPCGHAFHAQCLIAHVTQ 885 (936)
Q Consensus 831 ~~~~~C~~C~k~L~~~~~~~~~~~~~~~~~~~~~fvvFpCgH~fH~~CL~~~~~~ 885 (936)
.....|.+|...+.. +..+-+|||.||..|+...+..
T Consensus 13 ~~~~~C~IC~~~~~~------------------p~~~~~CgH~fC~~Ci~~~~~~ 49 (108)
T 2ckl_A 13 NPHLMCVLCGGYFID------------------ATTIIECLHSFCKTCIVRYLET 49 (108)
T ss_dssp GGGTBCTTTSSBCSS------------------EEEETTTCCEEEHHHHHHHHTS
T ss_pred CCcCCCccCChHHhC------------------cCEeCCCCChhhHHHHHHHHHh
Confidence 456789999877655 5444499999999999988643
No 184
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=94.19 E-value=0.59 Score=54.46 Aligned_cols=150 Identities=13% Similarity=0.137 Sum_probs=91.6
Q ss_pred ceeEEEEe--CCEEEEEecCCeEEEEeCCCCCc--------eeeEcCCCCCCccceeEEEeCCCCCeEEEEeecCCCccE
Q 002318 23 VITCMSAG--NDVIVLGTSKGWLIRHDFGAGDS--------YDIDLSAGRPGEQSIHKVFVDPGGSHCIATIVGSGGAET 92 (936)
Q Consensus 23 ~i~~l~v~--~n~l~l~~~~g~l~ridl~~~~~--------~~~~l~~~~~~~~~i~~i~lDp~G~hlli~~~~~~~g~~ 92 (936)
.+.+++.+ ++.|+.|..+|+|..||+..... ..++..... -...|..+-..|.| +++++. ++.+
T Consensus 131 sv~svafSPDG~~LAsgs~DGtVkIWd~~~~~l~~~~~i~l~ti~~~~~g-h~~~V~sVawSPdg--Laass~---D~tV 204 (588)
T 2j04_A 131 TYHCFEWNPIESSIVVGNEDGELQFFSIRKNSENTPEFYFESSIRLSDAG-SKDWVTHIVWYEDV--LVAALS---NNSV 204 (588)
T ss_dssp CEEEEEECSSSSCEEEEETTSEEEEEECCCCTTTCCCCEEEEEEECSCTT-CCCCEEEEEEETTE--EEEEET---TCCE
T ss_pred cEEEEEEcCCCCEEEEEcCCCEEEEEECCCCccccccceeeeeeeccccc-ccccEEEEEEcCCc--EEEEeC---CCeE
Confidence 48888865 45999999999999999933322 333333221 13689999999999 555554 6888
Q ss_pred EEEecCCCCce----eccCCCCceEEEEEecCCCCCCCCcceEEEEcCCCcEEEEEEecCCcccceeeEEeeeCCCCCce
Q 002318 93 FYTHAKWSKPR----VLSKLKGLVVNAVAWNRQQITEASTKEIILGTDTGQLHEMAVDEKDKREKYIKLLFELNELPEAF 168 (936)
Q Consensus 93 ~Y~~~~~~k~k----~L~klkg~~I~sVaw~~~~~~~~st~~iLiGt~~G~i~e~~i~~~~~~~~~~k~v~~l~~~~~~I 168 (936)
+-++....+.+ .|.......|.+|+|. . ..|+.+.+|.|....+..+ ....+... -.++|
T Consensus 205 rlWd~~~~~~~~~~~tL~~~h~~~V~svaFs-g--------~~LASa~~~tIkLWd~~~~------~~~~~~~g-h~~~V 268 (588)
T 2j04_A 205 FSMTVSASSHQPVSRMIQNASRRKITDLKIV-D--------YKVVLTCPGYVHKIDLKNY------SISSLKTG-SLENF 268 (588)
T ss_dssp EEECCCSSSSCCCEEEEECCCSSCCCCEEEE-T--------TEEEEECSSEEEEEETTTT------EEEEEECS-CCSCC
T ss_pred EEEECCCCccccceeeecccccCcEEEEEEE-C--------CEEEEEeCCeEEEEECCCC------eEEEEEcC-CCceE
Confidence 77777665532 2432233479999997 1 3444444688888776553 11123333 23679
Q ss_pred eeEEEEeeccCCCceEEEEEE-CCCeEEEE
Q 002318 169 MGLQMETASLSNGTRYYVMAV-TPTRLYSF 197 (936)
Q Consensus 169 ~gi~~~~~~~~~~~~~~i~as-t~~rly~f 197 (936)
.++.+ |.+++...++++. +++|++.+
T Consensus 269 ~~va~---~~s~d~~~La~a~edG~klw~~ 295 (588)
T 2j04_A 269 HIIPL---NHEKESTILLMSNKTSYKVLLE 295 (588)
T ss_dssp CEEEE---TTCSSCEEEEECSSCEEEEEES
T ss_pred EEEEe---eeCCCCCEEEEEcCCCCEEEee
Confidence 99887 1113334555555 33456654
No 185
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=94.15 E-value=0.64 Score=49.33 Aligned_cols=48 Identities=10% Similarity=0.108 Sum_probs=36.3
Q ss_pred HHHHchhhHHHHHHhcC-----ChhhHHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 002318 369 KVYLDMKEYAAALANCR-----DPLQRDQVYLVQAEAAFATKDFHRAASFYAK 416 (936)
Q Consensus 369 ~~ll~~~~f~~Al~~~~-----~~~~~~~I~~~~~~~L~~~g~y~~Aa~~y~~ 416 (936)
+..+..|+|..|+..++ +|..........+..++..|+|++|...+..
T Consensus 7 ~~~~~~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~ 59 (291)
T 3mkr_A 7 KNAFYIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKP 59 (291)
T ss_dssp HHHHHTTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT
T ss_pred HHHHHHHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhcc
Confidence 45788899999999864 2444445556678899999999999876643
No 186
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=94.14 E-value=0.017 Score=49.21 Aligned_cols=37 Identities=22% Similarity=0.590 Sum_probs=29.3
Q ss_pred ecccccccccchhhhhcccccccccccCCCCCCCCEEEEcCCChhHHHhHHHHHhh
Q 002318 830 IDRDEDCGVCRRKILVAGRDYRMARGYASVGPMAPFYVFPCGHAFHAQCLIAHVTQ 885 (936)
Q Consensus 830 i~~~~~C~~C~k~L~~~~~~~~~~~~~~~~~~~~~fvvFpCgH~fH~~CL~~~~~~ 885 (936)
+.....|.+|...+.. +. +.+|||.||..|+......
T Consensus 16 ~~~~~~C~IC~~~~~~------------------p~-~~~CgH~fC~~Ci~~~~~~ 52 (85)
T 2ecw_A 16 IKEEVTCPICLELLKE------------------PV-SADCNHSFCRACITLNYES 52 (85)
T ss_dssp CCTTTSCTTTCSCCSS------------------CE-ECTTSCCBCHHHHHHHHHH
T ss_pred CccCCCCcCCChhhCc------------------ce-eCCCCCHHHHHHHHHHHHh
Confidence 3456789999877654 44 6799999999999988765
No 187
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=94.05 E-value=0.0078 Score=53.31 Aligned_cols=36 Identities=17% Similarity=0.516 Sum_probs=28.0
Q ss_pred ccccccccchhhhhcccccccccccCCCCCCCCEEEEcCCChhHHHhHHHHHhh
Q 002318 832 RDEDCGVCRRKILVAGRDYRMARGYASVGPMAPFYVFPCGHAFHAQCLIAHVTQ 885 (936)
Q Consensus 832 ~~~~C~~C~k~L~~~~~~~~~~~~~~~~~~~~~fvvFpCgH~fH~~CL~~~~~~ 885 (936)
....|.+|...+.. +.+..+|||.||..|+......
T Consensus 21 ~~~~C~IC~~~~~~------------------p~~~~~CgH~fC~~Ci~~~~~~ 56 (99)
T 2y43_A 21 DLLRCGICFEYFNI------------------AMIIPQCSHNYCSLCIRKFLSY 56 (99)
T ss_dssp HHTBCTTTCSBCSS------------------EEECTTTCCEEEHHHHHHHHTT
T ss_pred CCCCcccCChhhCC------------------cCEECCCCCHhhHHHHHHHHHC
Confidence 34679999877665 4444489999999999988753
No 188
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=94.01 E-value=0.013 Score=53.36 Aligned_cols=52 Identities=35% Similarity=0.592 Sum_probs=30.4
Q ss_pred ccccccccchhhhhcccccccccccCCCCCCCCEEEEcCCChhHHHhHHHHHh
Q 002318 832 RDEDCGVCRRKILVAGRDYRMARGYASVGPMAPFYVFPCGHAFHAQCLIAHVT 884 (936)
Q Consensus 832 ~~~~C~~C~k~L~~~~~~~~~~~~~~~~~~~~~fvvFpCgH~fH~~CL~~~~~ 884 (936)
++..|.+|...+........ ........+.....+-+|||.||..|+...+.
T Consensus 24 ~~~~C~ICl~~~~~~~~~~~-~~~~~~~~~~~~~~~~~C~H~Fh~~Ci~~wl~ 75 (114)
T 1v87_A 24 PEEDCIICMEKLAVASGYSD-MTDSKALGPMVVGRLTKCSHAFHLLCLLAMYC 75 (114)
T ss_dssp CSCEETTTTEETTSCCSTTT-TCCCSSSCSSCCEEESSSCCEECHHHHHHHHH
T ss_pred CCCcCccCChhhcCcccccc-cccccccCcccceecCCCCCcccHHHHHHHHH
Confidence 45789999988865211000 00000001112344678999999999998873
No 189
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=93.96 E-value=1.1 Score=45.83 Aligned_cols=28 Identities=11% Similarity=-0.083 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHh
Q 002318 390 RDQVYLVQAEAAFATKDFHRAASFYAKI 417 (936)
Q Consensus 390 ~~~I~~~~~~~L~~~g~y~~Aa~~y~~~ 417 (936)
...+....|..++..|+|++|...|.+.
T Consensus 42 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a 69 (275)
T 1xnf_A 42 RAQLLYERGVLYDSLGLRALARNDFSQA 69 (275)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcccHHHHHHHHHHH
Confidence 3444455555555555555555555443
No 190
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=93.95 E-value=6.9 Score=40.75 Aligned_cols=104 Identities=10% Similarity=-0.007 Sum_probs=62.4
Q ss_pred ceeEEEEe-CCEEEEE--------ecCCeEEEEeCCCCCceeeEcCCCCCCccceeEEEeCCCCCeEEEEeecCCCccEE
Q 002318 23 VITCMSAG-NDVIVLG--------TSKGWLIRHDFGAGDSYDIDLSAGRPGEQSIHKVFVDPGGSHCIATIVGSGGAETF 93 (936)
Q Consensus 23 ~i~~l~v~-~n~l~l~--------~~~g~l~ridl~~~~~~~~~l~~~~~~~~~i~~i~lDp~G~hlli~~~~~~~g~~~ 93 (936)
...++++. ++.+|++ +.+|.|+++|....++..+..|........+..+.+||.+..+++++. .+..+
T Consensus 19 ~~~~~~~~~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~~~~~g~l~v~~~---~~~l~ 95 (314)
T 1pjx_A 19 GAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQLFVADM---RLGLL 95 (314)
T ss_dssp TCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSEEEEEET---TTEEE
T ss_pred CccCceECCCCCEEEEEeccccCCCCCCEEEEEeCCCCcEEEEEecccCCCCCCCceEEEecCCCcEEEEEC---CCCEE
Confidence 34677775 4567766 788999999983344444443211111246889999999345677664 34455
Q ss_pred EEecCCCCceec-cC----CCCceEEEEEecCCCCCCCCcceEEEEcCC
Q 002318 94 YTHAKWSKPRVL-SK----LKGLVVNAVAWNRQQITEASTKEIILGTDT 137 (936)
Q Consensus 94 Y~~~~~~k~k~L-~k----lkg~~I~sVaw~~~~~~~~st~~iLiGt~~ 137 (936)
.++.. .+.+.+ .. ..+..+.++++++ .+.+.+++..
T Consensus 96 ~~d~~-g~~~~~~~~~~~~~~~~~~~~i~~d~-------~g~l~v~~~~ 136 (314)
T 1pjx_A 96 VVQTD-GTFEEIAKKDSEGRRMQGCNDCAFDY-------EGNLWITAPA 136 (314)
T ss_dssp EEETT-SCEEECCSBCTTSCBCBCCCEEEECT-------TSCEEEEECB
T ss_pred EEeCC-CCEEEEEeccCCCccccCCcCEEECC-------CCCEEEEecC
Confidence 56655 444444 21 1224578899983 2478888753
No 191
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=93.93 E-value=0.009 Score=53.09 Aligned_cols=38 Identities=16% Similarity=0.238 Sum_probs=30.1
Q ss_pred cccccccccchhhhhcccccccccccCCCCCCCCEEEEcCCChhHHHhHHHHHhhc
Q 002318 831 DRDEDCGVCRRKILVAGRDYRMARGYASVGPMAPFYVFPCGHAFHAQCLIAHVTQC 886 (936)
Q Consensus 831 ~~~~~C~~C~k~L~~~~~~~~~~~~~~~~~~~~~fvvFpCgH~fH~~CL~~~~~~~ 886 (936)
.....|.+|...+.. +..+.+|||.||..|+...+...
T Consensus 20 ~~~~~C~IC~~~~~~------------------p~~~~~CgH~FC~~Ci~~~~~~~ 57 (100)
T 3lrq_A 20 AEVFRCFICMEKLRD------------------ARLCPHCSKLCCFSCIRRWLTEQ 57 (100)
T ss_dssp HHHTBCTTTCSBCSS------------------EEECTTTCCEEEHHHHHHHHHHT
T ss_pred CCCCCCccCCccccC------------------ccccCCCCChhhHHHHHHHHHHC
Confidence 345689999988765 55557999999999999887544
No 192
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=93.92 E-value=0.011 Score=47.93 Aligned_cols=35 Identities=26% Similarity=0.617 Sum_probs=27.7
Q ss_pred cccccccccchhhhhcccccccccccCCCCCCCCEEEEcCCChhHHHhHHHHHh
Q 002318 831 DRDEDCGVCRRKILVAGRDYRMARGYASVGPMAPFYVFPCGHAFHAQCLIAHVT 884 (936)
Q Consensus 831 ~~~~~C~~C~k~L~~~~~~~~~~~~~~~~~~~~~fvvFpCgH~fH~~CL~~~~~ 884 (936)
.....|.+|...+.. +.. .+|||.||..|+...+.
T Consensus 13 ~~~~~C~IC~~~~~~------------------p~~-~~CgH~fC~~Ci~~~~~ 47 (66)
T 2ecy_A 13 EDKYKCEKCHLVLCS------------------PKQ-TECGHRFCESCMAALLS 47 (66)
T ss_dssp CCCEECTTTCCEESS------------------CCC-CSSSCCCCHHHHHHHHT
T ss_pred CcCCCCCCCChHhcC------------------eeE-CCCCCHHHHHHHHHHHH
Confidence 446689999977655 333 59999999999999874
No 193
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=93.82 E-value=3 Score=43.92 Aligned_cols=161 Identities=8% Similarity=0.100 Sum_probs=87.1
Q ss_pred CceeEEEEeC-CEEEEEecCCeEEEEeCCCCCceeeEcCCCCCCccceeEEEeCCCCCeEEEEeecC---------CCcc
Q 002318 22 GVITCMSAGN-DVIVLGTSKGWLIRHDFGAGDSYDIDLSAGRPGEQSIHKVFVDPGGSHCIATIVGS---------GGAE 91 (936)
Q Consensus 22 ~~i~~l~v~~-n~l~l~~~~g~l~ridl~~~~~~~~~l~~~~~~~~~i~~i~lDp~G~hlli~~~~~---------~~g~ 91 (936)
..+.++++.. +-+++++ .+.|+++|+.......+.-+........++.+.+||.|. +.+++... ..|.
T Consensus 54 ~~~~~i~~~~dG~l~v~~-~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~di~~d~dG~-l~~~~~~~~~~~~~~~~~~~~ 131 (297)
T 3g4e_A 54 APVSSVALRQSGGYVATI-GTKFCALNWKEQSAVVLATVDNDKKNNRFNDGKVDPAGR-YFAGTMAEETAPAVLERHQGA 131 (297)
T ss_dssp SCEEEEEEBTTSSEEEEE-TTEEEEEETTTTEEEEEEECCTTCSSEEEEEEEECTTSC-EEEEEEECCSBTTBCCTTCEE
T ss_pred CceEEEEECCCCCEEEEE-CCeEEEEECCCCcEEEEEecCCCCCCCCCCCEEECCCCC-EEEecCCcccccccccCCCcE
Confidence 4678888863 3477777 568999999433344332221111235688999999998 55554210 1245
Q ss_pred EEEEecCCCCceeccCCCCceEEEEEecCCCCCCCCcceE-EEEcCCCcEEEEEEecCCcccceeeEEeeeCCCCCceee
Q 002318 92 TFYTHAKWSKPRVLSKLKGLVVNAVAWNRQQITEASTKEI-ILGTDTGQLHEMAVDEKDKREKYIKLLFELNELPEAFMG 170 (936)
Q Consensus 92 ~~Y~~~~~~k~k~L~klkg~~I~sVaw~~~~~~~~st~~i-LiGt~~G~i~e~~i~~~~~~~~~~k~v~~l~~~~~~I~g 170 (936)
.|.+... .+...+.. .......++|+++ .+.+ +..+.++.|+.+.++..++.-..-+.+..++..++...|
T Consensus 132 l~~~d~~-g~~~~~~~-~~~~pngi~~spd------g~~lyv~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g 203 (297)
T 3g4e_A 132 LYSLFPD-HHVKKYFD-QVDISNGLDWSLD------HKIFYYIDSLSYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDG 203 (297)
T ss_dssp EEEECTT-SCEEEEEE-EESBEEEEEECTT------SCEEEEEEGGGTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEE
T ss_pred EEEEECC-CCEEEEee-ccccccceEEcCC------CCEEEEecCCCCcEEEEeccCCCCcccCcEEEEECCCCCCCCCe
Confidence 6666543 22222221 1124578999843 1234 445667889888875322211112333445432245788
Q ss_pred EEEEeeccCCCceEEEEEE--CCCeEEEEec
Q 002318 171 LQMETASLSNGTRYYVMAV--TPTRLYSFTG 199 (936)
Q Consensus 171 i~~~~~~~~~~~~~~i~as--t~~rly~f~~ 199 (936)
+.+.. + +. +|++ ...+++.|..
T Consensus 204 ~~~d~-----~-G~-lwva~~~~~~v~~~d~ 227 (297)
T 3g4e_A 204 MCIDA-----E-GK-LWVACYNGGRVIRLDP 227 (297)
T ss_dssp EEEBT-----T-SC-EEEEEETTTEEEEECT
T ss_pred eEECC-----C-CC-EEEEEcCCCEEEEEcC
Confidence 88762 1 22 3333 3567887753
No 194
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=93.56 E-value=0.021 Score=48.34 Aligned_cols=33 Identities=30% Similarity=0.672 Sum_probs=26.7
Q ss_pred cccccccchhhhhcccccccccccCCCCCCCCEEEEcCCChhHHHhHHHHHh
Q 002318 833 DEDCGVCRRKILVAGRDYRMARGYASVGPMAPFYVFPCGHAFHAQCLIAHVT 884 (936)
Q Consensus 833 ~~~C~~C~k~L~~~~~~~~~~~~~~~~~~~~~fvvFpCgH~fH~~CL~~~~~ 884 (936)
...|.+|...+.. +. +.+|||.||..|+...+.
T Consensus 15 ~~~C~IC~~~~~~------------------p~-~~~CgH~fC~~Ci~~~~~ 47 (81)
T 2csy_A 15 PFRCFICRQAFQN------------------PV-VTKCRHYFCESCALEHFR 47 (81)
T ss_dssp CSBCSSSCSBCCS------------------EE-ECTTSCEEEHHHHHHHHH
T ss_pred CCCCcCCCchhcC------------------ee-EccCCCHhHHHHHHHHHH
Confidence 4579999877654 43 579999999999998875
No 195
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=93.48 E-value=0.014 Score=54.11 Aligned_cols=34 Identities=21% Similarity=0.471 Sum_probs=27.1
Q ss_pred ccccccccchhhhhcccccccccccCCCCCCCCEEEEcCCChhHHHhHHHHHh
Q 002318 832 RDEDCGVCRRKILVAGRDYRMARGYASVGPMAPFYVFPCGHAFHAQCLIAHVT 884 (936)
Q Consensus 832 ~~~~C~~C~k~L~~~~~~~~~~~~~~~~~~~~~fvvFpCgH~fH~~CL~~~~~ 884 (936)
....|.+|...+.. | +..||||.||..|+.....
T Consensus 51 ~~~~C~IC~~~~~~------------------p-~~~~CgH~fC~~Ci~~~~~ 84 (124)
T 3fl2_A 51 ETFQCICCQELVFR------------------P-ITTVCQHNVCKDCLDRSFR 84 (124)
T ss_dssp HHTBCTTTSSBCSS------------------E-EECTTSCEEEHHHHHHHHH
T ss_pred cCCCCCcCChHHcC------------------c-EEeeCCCcccHHHHHHHHh
Confidence 45679999977665 4 3459999999999998765
No 196
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=93.40 E-value=3 Score=44.00 Aligned_cols=158 Identities=9% Similarity=0.085 Sum_probs=88.6
Q ss_pred ceeEEEEeCC--EEEEEe-cCCeEEEEeC-CCCCceeeE-cCCCCCCccceeEEEeCCCCCeEEEEe-ecCCCccEEEEe
Q 002318 23 VITCMSAGND--VIVLGT-SKGWLIRHDF-GAGDSYDID-LSAGRPGEQSIHKVFVDPGGSHCIATI-VGSGGAETFYTH 96 (936)
Q Consensus 23 ~i~~l~v~~n--~l~l~~-~~g~l~ridl-~~~~~~~~~-l~~~~~~~~~i~~i~lDp~G~hlli~~-~~~~~g~~~Y~~ 96 (936)
.+.+++++.+ .++++. .+|.|..+|+ ++.....+. ++ ....+..+.++|.|.+++++. . ++..+.+.
T Consensus 85 ~~~~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~----~~~~~~~~~~s~dg~~l~~~~~~---~~~v~~~d 157 (343)
T 1ri6_A 85 SLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVE----GLDGCHSANISPDNRTLWVPALK---QDRICLFT 157 (343)
T ss_dssp CCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEEC----CCTTBCCCEECTTSSEEEEEEGG---GTEEEEEE
T ss_pred CCcEEEEcCCCCEEEEEecCCCeEEEEECCCCcccccccccc----CCCCceEEEECCCCCEEEEecCC---CCEEEEEE
Confidence 5688888754 566665 4788999999 332211121 11 124578899999999998887 4 57776666
Q ss_pred cCC-CCcee-----ccCCCCceEEEEEecCCCCCCCCcceEEEEc-CCCcEEEEEEecCCcccceeeEEeeeCCC---CC
Q 002318 97 AKW-SKPRV-----LSKLKGLVVNAVAWNRQQITEASTKEIILGT-DTGQLHEMAVDEKDKREKYIKLLFELNEL---PE 166 (936)
Q Consensus 97 ~~~-~k~k~-----L~klkg~~I~sVaw~~~~~~~~st~~iLiGt-~~G~i~e~~i~~~~~~~~~~k~v~~l~~~---~~ 166 (936)
... .+... +.--.|..+.+++|++. ...+++++ .+|.|....++...+.......+-.++.. ..
T Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pd------g~~l~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 231 (343)
T 1ri6_A 158 VSDDGHLVAQDPAEVTTVEGAGPRHMVFHPN------EQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTR 231 (343)
T ss_dssp ECTTSCEEEEEEEEEECSTTCCEEEEEECTT------SSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCC
T ss_pred ecCCCceeeecccccccCCCCCcceEEECCC------CCEEEEEeCCCCEEEEEEecCCCCcEEEEeeccccCccccccC
Confidence 544 33321 22124568899999843 12454444 67888887775422222222333223321 12
Q ss_pred ceeeEEEEeeccCCCceEEEEEE-CCCeEEEEe
Q 002318 167 AFMGLQMETASLSNGTRYYVMAV-TPTRLYSFT 198 (936)
Q Consensus 167 ~I~gi~~~~~~~~~~~~~~i~as-t~~rly~f~ 198 (936)
.+.++.|.. +.++++++. ....++.|.
T Consensus 232 ~~~~i~~s~-----dg~~l~v~~~~~~~i~v~d 259 (343)
T 1ri6_A 232 WAADIHITP-----DGRHLYACDRTASLITVFS 259 (343)
T ss_dssp CEEEEEECT-----TSSEEEEEETTTTEEEEEE
T ss_pred CccceEECC-----CCCEEEEEecCCCEEEEEE
Confidence 355677752 224554444 355666564
No 197
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=93.35 E-value=0.73 Score=56.28 Aligned_cols=154 Identities=14% Similarity=0.130 Sum_probs=93.1
Q ss_pred CCceeEEEEeC-CEEEEEecCCeEEEEeCCCCCceeeEcCCCCCCccceeEEEeCCCCCeEEEEeecCCCccEEEEecCC
Q 002318 21 RGVITCMSAGN-DVIVLGTSKGWLIRHDFGAGDSYDIDLSAGRPGEQSIHKVFVDPGGSHCIATIVGSGGAETFYTHAKW 99 (936)
Q Consensus 21 ~~~i~~l~v~~-n~l~l~~~~g~l~ridl~~~~~~~~~l~~~~~~~~~i~~i~lDp~G~hlli~~~~~~~g~~~Y~~~~~ 99 (936)
.+.|.+++... +.||+|+.++-|+++|........+.-+ .......|..|+.|+.|. +.|.|. ++-.++++...
T Consensus 362 ~~~v~~i~~d~~g~lWigt~~~Gl~~~~~~~~~~~~~~~~-~~~~~~~v~~i~~d~~g~-lWigt~---~~Gl~~~~~~~ 436 (781)
T 3v9f_A 362 NKVVSSVCDDGQGKLWIGTDGGGINVFENGKRVAIYNKEN-RELLSNSVLCSLKDSEGN-LWFGTY---LGNISYYNTRL 436 (781)
T ss_dssp SSCEEEEEECTTSCEEEEEBSSCEEEEETTEEEEECC------CCCSBEEEEEECTTSC-EEEEET---TEEEEEECSSS
T ss_pred CcceEEEEEcCCCCEEEEeCCCcEEEEECCCCeEEEccCC-CCCCCcceEEEEECCCCC-EEEEec---cCCEEEEcCCC
Confidence 35689998875 7999999888899999833223333111 112246799999999886 666665 45566777655
Q ss_pred CCceecc--CCCCceEEEEEecCCCCCCCCcceEEEEcCCCcEEEEEEecCCcccceeeEEeeeCC---CCCceeeEEEE
Q 002318 100 SKPRVLS--KLKGLVVNAVAWNRQQITEASTKEIILGTDTGQLHEMAVDEKDKREKYIKLLFELNE---LPEAFMGLQME 174 (936)
Q Consensus 100 ~k~k~L~--klkg~~I~sVaw~~~~~~~~st~~iLiGt~~G~i~e~~i~~~~~~~~~~k~v~~l~~---~~~~I~gi~~~ 174 (936)
.+.+.+. .+.+..|.+++.++ .+.+.+||..| |+.+..... .++.....+. ....|.+|...
T Consensus 437 ~~~~~~~~~~~~~~~v~~i~~d~-------~g~lwigt~~G-l~~~~~~~~-----~~~~~~~~~~~~~~~~~i~~i~~d 503 (781)
T 3v9f_A 437 KKFQIIELEKNELLDVRVFYEDK-------NKKIWIGTHAG-VFVIDLASK-----KVIHHYDTSNSQLLENFVRSIAQD 503 (781)
T ss_dssp CEEEECCSTTTCCCCEEEEEECT-------TSEEEEEETTE-EEEEESSSS-----SCCEEECTTTSSCSCSCEEEEEEC
T ss_pred CcEEEeccCCCCCCeEEEEEECC-------CCCEEEEECCc-eEEEeCCCC-----eEEecccCcccccccceeEEEEEc
Confidence 5555543 23456899998872 35899999977 666554322 1222221211 01347777654
Q ss_pred eeccCCCceEEEEEEC-CCeEEEEec
Q 002318 175 TASLSNGTRYYVMAVT-PTRLYSFTG 199 (936)
Q Consensus 175 ~~~~~~~~~~~i~ast-~~rly~f~~ 199 (936)
. .+. +|+.| ..-||.|..
T Consensus 504 ~------~g~-lWigt~~~Gl~~~~~ 522 (781)
T 3v9f_A 504 S------EGR-FWIGTFGGGVGIYTP 522 (781)
T ss_dssp T------TCC-EEEEESSSCEEEECT
T ss_pred C------CCC-EEEEEcCCCEEEEeC
Confidence 2 122 44455 366887764
No 198
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=93.35 E-value=0.014 Score=49.75 Aligned_cols=37 Identities=27% Similarity=0.756 Sum_probs=28.4
Q ss_pred ecccccccccchhhhhcccccccccccCCCCCCCCEEEEcCCChhHHHhHHHHHhh
Q 002318 830 IDRDEDCGVCRRKILVAGRDYRMARGYASVGPMAPFYVFPCGHAFHAQCLIAHVTQ 885 (936)
Q Consensus 830 i~~~~~C~~C~k~L~~~~~~~~~~~~~~~~~~~~~fvvFpCgH~fH~~CL~~~~~~ 885 (936)
+.....|.+|...+.. +. +.+|||.||..|+...+..
T Consensus 16 ~~~~~~C~IC~~~~~~------------------p~-~~~CgH~fC~~Ci~~~~~~ 52 (85)
T 2ecv_A 16 VKEEVTCPICLELLTQ------------------PL-SLDCGHSFCQACLTANHKK 52 (85)
T ss_dssp CCCCCCCTTTCSCCSS------------------CB-CCSSSCCBCTTHHHHHHHH
T ss_pred ccCCCCCCCCCcccCC------------------ce-eCCCCCHHHHHHHHHHHHH
Confidence 3456789999987654 33 3599999999999987654
No 199
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=93.23 E-value=4 Score=43.25 Aligned_cols=149 Identities=9% Similarity=0.139 Sum_probs=83.8
Q ss_pred ceeEEEEe--CCEEEEEecCCeEEEEeCCCCCceeeEcCCCCCCccceeEEEeCCCCCeEEEEeecCCC----ccEEEEe
Q 002318 23 VITCMSAG--NDVIVLGTSKGWLIRHDFGAGDSYDIDLSAGRPGEQSIHKVFVDPGGSHCIATIVGSGG----AETFYTH 96 (936)
Q Consensus 23 ~i~~l~v~--~n~l~l~~~~g~l~ridl~~~~~~~~~l~~~~~~~~~i~~i~lDp~G~hlli~~~~~~~----g~~~Y~~ 96 (936)
...++++. +++.+.++.+|.|+++|.....+..+..+. ...+..+.+||.|. +++++.. + +..+.++
T Consensus 46 ~~~~~~~~~~g~l~~~~~~~~~i~~~d~~~~~~~~~~~~~----~~~~~~i~~~~dg~-l~v~~~~--~~~~~~~i~~~d 118 (333)
T 2dg1_A 46 QLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKRPFVSH----KANPAAIKIHKDGR-LFVCYLG--DFKSTGGIFAAT 118 (333)
T ss_dssp CEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECS----SSSEEEEEECTTSC-EEEEECT--TSSSCCEEEEEC
T ss_pred cccCcEECCCCCEEEEECCCCEEEEEeCCCCcEEEEeeCC----CCCcceEEECCCCc-EEEEeCC--CCCCCceEEEEe
Confidence 35667775 344456788899999999444444443221 35689999999996 5555440 2 3566666
Q ss_pred cCCCCce-ecc-CCCCceEEEEEecCCCCCCCCcceEEEEcCC-------CcEEEEEEecCCcccceeeEEeeeCCCCCc
Q 002318 97 AKWSKPR-VLS-KLKGLVVNAVAWNRQQITEASTKEIILGTDT-------GQLHEMAVDEKDKREKYIKLLFELNELPEA 167 (936)
Q Consensus 97 ~~~~k~k-~L~-klkg~~I~sVaw~~~~~~~~st~~iLiGt~~-------G~i~e~~i~~~~~~~~~~k~v~~l~~~~~~ 167 (936)
....+.+ .+. ...+..+.+++|++. +.+++++.. |.||....+.. .++.+..-. ..
T Consensus 119 ~~~~~~~~~~~~~~~~~~~~~i~~d~~-------g~l~v~~~~~~~~~~~~~l~~~~~~~~-----~~~~~~~~~---~~ 183 (333)
T 2dg1_A 119 ENGDNLQDIIEDLSTAYCIDDMVFDSK-------GGFYFTDFRGYSTNPLGGVYYVSPDFR-----TVTPIIQNI---SV 183 (333)
T ss_dssp TTSCSCEEEECSSSSCCCEEEEEECTT-------SCEEEEECCCBTTBCCEEEEEECTTSC-----CEEEEEEEE---SS
T ss_pred CCCCEEEEEEccCccCCcccceEECCC-------CCEEEEeccccccCCCceEEEEeCCCC-----EEEEeecCC---Cc
Confidence 5555544 222 123567899999832 478888763 55665533221 122221111 23
Q ss_pred eeeEEEEeeccCCCceEEEEEEC-CCeEEEEe
Q 002318 168 FMGLQMETASLSNGTRYYVMAVT-PTRLYSFT 198 (936)
Q Consensus 168 I~gi~~~~~~~~~~~~~~i~ast-~~rly~f~ 198 (936)
+.++.|.. +.+.+.++.+ ..+++.|.
T Consensus 184 ~~~i~~~~-----dg~~l~v~~~~~~~i~~~d 210 (333)
T 2dg1_A 184 ANGIALST-----DEKVLWVTETTANRLHRIA 210 (333)
T ss_dssp EEEEEECT-----TSSEEEEEEGGGTEEEEEE
T ss_pred ccceEECC-----CCCEEEEEeCCCCeEEEEE
Confidence 56777652 2234444443 45676664
No 200
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=93.16 E-value=0.75 Score=55.15 Aligned_cols=98 Identities=9% Similarity=0.016 Sum_probs=64.4
Q ss_pred ceeEEEEeCCEEEEEecCCeEEEEeCCCCCceeeEcCCCCCCccceeEEEeCCCCCeEEEEeecCCCccEEEEecCC---
Q 002318 23 VITCMSAGNDVIVLGTSKGWLIRHDFGAGDSYDIDLSAGRPGEQSIHKVFVDPGGSHCIATIVGSGGAETFYTHAKW--- 99 (936)
Q Consensus 23 ~i~~l~v~~n~l~l~~~~g~l~ridl~~~~~~~~~l~~~~~~~~~i~~i~lDp~G~hlli~~~~~~~g~~~Y~~~~~--- 99 (936)
.|++++++.+-.++...+|.|+.+|+...+...+.-+ ...+..+-++|.|.+++.+ . ++..|.+....
T Consensus 83 ~v~~~~~spd~~~~~~~~~~i~~~d~~~~~~~~l~~~-----~~~~~~~~~SpdG~~la~~-~---~~~i~v~~~~~~~~ 153 (706)
T 2z3z_A 83 PSFRTLDAGRGLVVLFTQGGLVGFDMLARKVTYLFDT-----NEETASLDFSPVGDRVAYV-R---NHNLYIARGGKLGE 153 (706)
T ss_dssp CCEEEEETTTTEEEEEETTEEEEEETTTTEEEEEECC-----TTCCTTCEECTTSSEEEEE-E---TTEEEEEECBCTTS
T ss_pred CceeEEECCCCeEEEEECCEEEEEECCCCceEEccCC-----cccccCCcCCCCCCEEEEE-E---CCeEEEEecCcccc
Confidence 5899999976334444669999999933333322211 2456778889999998885 4 58888888776
Q ss_pred --CCceeccCCCCce--------------EEEEEecCCCCCCCCcceEEEEc
Q 002318 100 --SKPRVLSKLKGLV--------------VNAVAWNRQQITEASTKEIILGT 135 (936)
Q Consensus 100 --~k~k~L~klkg~~--------------I~sVaw~~~~~~~~st~~iLiGt 135 (936)
.+.+.+....+.. +.+++|+++ .+.|+.++
T Consensus 154 ~~g~~~~~~~~~~~~~~~g~~~~~ee~~~~~~~~~SpD------g~~la~~~ 199 (706)
T 2z3z_A 154 GMSRAIAVTIDGTETLVYGQAVHQREFGIEKGTFWSPK------GSCLAFYR 199 (706)
T ss_dssp CCCCCEESCSCCBTTEEESSCCGGGCTTCCCSEEECTT------SSEEEEEE
T ss_pred cCCCcEEeccCCCCCeEcccchhhhhcCCCceEEECCC------CCEEEEEE
Confidence 6666665433222 489999953 23566554
No 201
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=93.15 E-value=0.024 Score=46.40 Aligned_cols=35 Identities=23% Similarity=0.717 Sum_probs=26.8
Q ss_pred ecccccccccchhhhhcccccccccccCCCCCCCCEEEEcCCChhHHHhHHHHHh
Q 002318 830 IDRDEDCGVCRRKILVAGRDYRMARGYASVGPMAPFYVFPCGHAFHAQCLIAHVT 884 (936)
Q Consensus 830 i~~~~~C~~C~k~L~~~~~~~~~~~~~~~~~~~~~fvvFpCgH~fH~~CL~~~~~ 884 (936)
+.....|.+|...+. . ++.||||.||..|+...+.
T Consensus 12 ~~~~~~C~IC~~~~~-------------------~-~~~~CgH~fc~~Ci~~~~~ 46 (70)
T 2ecn_A 12 LTDEEECCICMDGRA-------------------D-LILPCAHSFCQKCIDKWSD 46 (70)
T ss_dssp CCCCCCCSSSCCSCC-------------------S-EEETTTEEECHHHHHHSSC
T ss_pred CCCCCCCeeCCcCcc-------------------C-cccCCCCcccHHHHHHHHH
Confidence 345678999975432 4 7889999999999987654
No 202
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=93.10 E-value=0.8 Score=44.02 Aligned_cols=49 Identities=10% Similarity=0.020 Sum_probs=31.2
Q ss_pred HHHchhhHHHHHHhcCChh----hHHHHHHHHHHHHHhcCCHHHHHHHHHHhc
Q 002318 370 VYLDMKEYAAALANCRDPL----QRDQVYLVQAEAAFATKDFHRAASFYAKIN 418 (936)
Q Consensus 370 ~ll~~~~f~~Al~~~~~~~----~~~~I~~~~~~~L~~~g~y~~Aa~~y~~~~ 418 (936)
.+.++|+|++|++..+... .-..+....|.-++..|++++|...+.+..
T Consensus 14 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~ 66 (184)
T 3vtx_A 14 KKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFV 66 (184)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 3566777777777765311 123456666777777777777777766653
No 203
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=92.95 E-value=1 Score=48.40 Aligned_cols=45 Identities=11% Similarity=0.228 Sum_probs=24.8
Q ss_pred hhhHHHHHH-hcC--------ChhhHHHHHHHHHHHHHhcCCHHHHHHHHHHhc
Q 002318 374 MKEYAAALA-NCR--------DPLQRDQVYLVQAEAAFATKDFHRAASFYAKIN 418 (936)
Q Consensus 374 ~~~f~~Al~-~~~--------~~~~~~~I~~~~~~~L~~~g~y~~Aa~~y~~~~ 418 (936)
.|+|++|++ ..+ +|..........|..++..|+|++|...|.+..
T Consensus 38 ~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al 91 (368)
T 1fch_A 38 LSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAV 91 (368)
T ss_dssp --------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 467888876 321 122233455677888888999999988888765
No 204
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=92.93 E-value=4.8 Score=41.44 Aligned_cols=150 Identities=7% Similarity=0.001 Sum_probs=88.2
Q ss_pred CceeEEEEe-CCEEEEEec-CCeEEEEeCCCCCceeeEcCCCCCCccceeEEEeCCCCCeEEEEeecCCCccEEEEecCC
Q 002318 22 GVITCMSAG-NDVIVLGTS-KGWLIRHDFGAGDSYDIDLSAGRPGEQSIHKVFVDPGGSHCIATIVGSGGAETFYTHAKW 99 (936)
Q Consensus 22 ~~i~~l~v~-~n~l~l~~~-~g~l~ridl~~~~~~~~~l~~~~~~~~~i~~i~lDp~G~hlli~~~~~~~g~~~Y~~~~~ 99 (936)
..+.++++. ++.+|++.. +|.|+++|.. ..+..+.++.. ...+..+.+||.|.. .+++. ++|..+.++..
T Consensus 15 ~~~~~i~~d~~g~l~v~~~~~~~v~~~d~~-~~~~~~~~~~~---~~~~~~i~~~~~g~l-~v~~~--~~~~i~~~~~~- 86 (299)
T 2z2n_A 15 TGPYGITVSDKGKVWITQHKANMISCINLD-GKITEYPLPTP---DAKVMCLTISSDGEV-WFTEN--AANKIGRITKK- 86 (299)
T ss_dssp CCEEEEEECTTSCEEEEETTTTEEEEECTT-CCEEEEECSST---TCCEEEEEECTTSCE-EEEET--TTTEEEEECTT-
T ss_pred CCccceEECCCCCEEEEecCCCcEEEEcCC-CCeEEecCCcc---cCceeeEEECCCCCE-EEeCC--CCCeEEEECCC-
Confidence 457899887 457888887 6899999996 55666665522 357899999999974 44433 14666666544
Q ss_pred CCceeccC-CCCceEEEEEecCCCCCCCCcceEEEEcC-CCcEEEEEEecCCcccceeeEEeeeCCCCCceeeEEEEeec
Q 002318 100 SKPRVLSK-LKGLVVNAVAWNRQQITEASTKEIILGTD-TGQLHEMAVDEKDKREKYIKLLFELNELPEAFMGLQMETAS 177 (936)
Q Consensus 100 ~k~k~L~k-lkg~~I~sVaw~~~~~~~~st~~iLiGt~-~G~i~e~~i~~~~~~~~~~k~v~~l~~~~~~I~gi~~~~~~ 177 (936)
.+.+.+.- ..+..+.++++++ .+.+.+++. .|.|+...... .++. +.++.....+.++.+..
T Consensus 87 g~~~~~~~~~~~~~~~~i~~~~-------~g~l~v~~~~~~~i~~~d~~g------~~~~-~~~~~~~~~~~~i~~~~-- 150 (299)
T 2z2n_A 87 GIIKEYTLPNPDSAPYGITEGP-------NGDIWFTEMNGNRIGRITDDG------KIRE-YELPNKGSYPSFITLGS-- 150 (299)
T ss_dssp SCEEEEECSSTTCCEEEEEECT-------TSCEEEEETTTTEEEEECTTC------CEEE-EECSSTTCCEEEEEECT--
T ss_pred CcEEEEeCCCcCCCceeeEECC-------CCCEEEEecCCceEEEECCCC------CEEE-ecCCCCCCCCceEEEcC--
Confidence 23332221 1345788899883 236777764 56677654311 1222 23332123467777652
Q ss_pred cCCCceEEEEEEC-CCeEEEEec
Q 002318 178 LSNGTRYYVMAVT-PTRLYSFTG 199 (936)
Q Consensus 178 ~~~~~~~~i~ast-~~rly~f~~ 199 (936)
+ +.+.++++ ...++.|..
T Consensus 151 ---~-g~l~v~~~~~~~i~~~~~ 169 (299)
T 2z2n_A 151 ---D-NALWFTENQNNAIGRITE 169 (299)
T ss_dssp ---T-SCEEEEETTTTEEEEECT
T ss_pred ---C-CCEEEEeCCCCEEEEEcC
Confidence 1 22333333 467887754
No 205
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=92.81 E-value=1.6 Score=47.07 Aligned_cols=49 Identities=4% Similarity=-0.054 Sum_probs=40.2
Q ss_pred HHHchhhHHHHHHhcCCh----hhHHHHHHHHHHHHHhcCCHHHHHHHHHHhc
Q 002318 370 VYLDMKEYAAALANCRDP----LQRDQVYLVQAEAAFATKDFHRAASFYAKIN 418 (936)
Q Consensus 370 ~ll~~~~f~~Al~~~~~~----~~~~~I~~~~~~~L~~~g~y~~Aa~~y~~~~ 418 (936)
.++..|+|++|+++.+.. ..-..+....|..++..|+|++|...|.+..
T Consensus 74 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al 126 (365)
T 4eqf_A 74 KRLKEGDLPVTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQRCL 126 (365)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 478899999999997631 1235678889999999999999999998875
No 206
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=92.72 E-value=0.034 Score=48.33 Aligned_cols=36 Identities=22% Similarity=0.643 Sum_probs=28.6
Q ss_pred ecccccccccchhhhhcccccccccccCCCCCCCCEEEEc-CCChhHHHhHHHHHh
Q 002318 830 IDRDEDCGVCRRKILVAGRDYRMARGYASVGPMAPFYVFP-CGHAFHAQCLIAHVT 884 (936)
Q Consensus 830 i~~~~~C~~C~k~L~~~~~~~~~~~~~~~~~~~~~fvvFp-CgH~fH~~CL~~~~~ 884 (936)
+...-.|.+|...+.. |. +.| |||.|+..|+.....
T Consensus 10 ~~~~~~C~IC~~~~~~------------------p~-~~~~CgH~fC~~Ci~~~~~ 46 (92)
T 3ztg_A 10 IPDELLCLICKDIMTD------------------AV-VIPCCGNSYCDECIRTALL 46 (92)
T ss_dssp CCTTTEETTTTEECSS------------------CE-ECTTTCCEECHHHHHHHHH
T ss_pred CCcCCCCCCCChhhcC------------------ce-ECCCCCCHHHHHHHHHHHH
Confidence 4556789999977665 54 568 999999999998864
No 207
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=92.63 E-value=0.029 Score=54.70 Aligned_cols=35 Identities=23% Similarity=0.509 Sum_probs=27.8
Q ss_pred cccccccchhhhhcccccccccccCCCCCCCCEEEEcCCChhHHHhHHHHHhh
Q 002318 833 DEDCGVCRRKILVAGRDYRMARGYASVGPMAPFYVFPCGHAFHAQCLIAHVTQ 885 (936)
Q Consensus 833 ~~~C~~C~k~L~~~~~~~~~~~~~~~~~~~~~fvvFpCgH~fH~~CL~~~~~~ 885 (936)
...|.+|...+.. +..+-+|||.||..|+...+..
T Consensus 54 ~~~C~IC~~~~~~------------------p~~~~~CgH~fC~~Ci~~~~~~ 88 (165)
T 2ckl_B 54 ELMCPICLDMLKN------------------TMTTKECLHRFCADCIITALRS 88 (165)
T ss_dssp HHBCTTTSSBCSS------------------EEEETTTCCEEEHHHHHHHHHT
T ss_pred CCCCcccChHhhC------------------cCEeCCCCChhHHHHHHHHHHh
Confidence 4589999877665 5555599999999999988754
No 208
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=92.62 E-value=0.018 Score=48.42 Aligned_cols=37 Identities=19% Similarity=0.663 Sum_probs=27.9
Q ss_pred ecccccccccchhhhhcccccccccccCCCCCCCCEEEEcCCChhHHHhHHHHHhh
Q 002318 830 IDRDEDCGVCRRKILVAGRDYRMARGYASVGPMAPFYVFPCGHAFHAQCLIAHVTQ 885 (936)
Q Consensus 830 i~~~~~C~~C~k~L~~~~~~~~~~~~~~~~~~~~~fvvFpCgH~fH~~CL~~~~~~ 885 (936)
+.....|.+|...+.. +. +.+|||.||..|+.+.+..
T Consensus 9 ~~~~~~C~IC~~~~~~------------------p~-~l~CgH~fC~~Ci~~~~~~ 45 (79)
T 2egp_A 9 VQEEVTCPICLELLTE------------------PL-SLDCGHSLCRACITVSNKE 45 (79)
T ss_dssp CCCCCEETTTTEECSS------------------CC-CCSSSCCCCHHHHSCCCCC
T ss_pred cccCCCCcCCCcccCC------------------ee-ECCCCCHHHHHHHHHHHHh
Confidence 3456789999987654 33 3599999999999876543
No 209
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=92.61 E-value=10 Score=38.86 Aligned_cols=150 Identities=8% Similarity=0.007 Sum_probs=89.0
Q ss_pred CceeEEEEe-CCEEEEEe-cCCeEEEEeCCCCCceeeEcCCCCCCccceeEEEeCCCCCeEEEEeecCCCccEEEEecCC
Q 002318 22 GVITCMSAG-NDVIVLGT-SKGWLIRHDFGAGDSYDIDLSAGRPGEQSIHKVFVDPGGSHCIATIVGSGGAETFYTHAKW 99 (936)
Q Consensus 22 ~~i~~l~v~-~n~l~l~~-~~g~l~ridl~~~~~~~~~l~~~~~~~~~i~~i~lDp~G~hlli~~~~~~~g~~~Y~~~~~ 99 (936)
....++++. ++.+|++. .+|.|.++|.. ..+..+.++.. ...+..|.+||.|. +.++.. +++..+.++..
T Consensus 20 ~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~-~~~~~~~~~~~---~~~~~~i~~~~~g~-l~v~~~--~~~~v~~~d~~- 91 (300)
T 2qc5_A 20 SGPYGITSSEDGKVWFTQHKANKISSLDQS-GRIKEFEVPTP---DAKVMCLIVSSLGD-IWFTEN--GANKIGKLSKK- 91 (300)
T ss_dssp CCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEECSST---TCCEEEEEECTTSC-EEEEET--TTTEEEEECTT-
T ss_pred CCcceeeECCCCCEEEEcCCCCeEEEECCC-CceEEEECCCC---CCcceeEEECCCCC-EEEEec--CCCeEEEECCC-
Confidence 357888886 45688887 47899999986 55666666521 35789999999997 455443 14556666554
Q ss_pred CCceeccC-CCCceEEEEEecCCCCCCCCcceEEEEcC-CCcEEEEEEecCCcccceeeEEeeeCCCCCceeeEEEEeec
Q 002318 100 SKPRVLSK-LKGLVVNAVAWNRQQITEASTKEIILGTD-TGQLHEMAVDEKDKREKYIKLLFELNELPEAFMGLQMETAS 177 (936)
Q Consensus 100 ~k~k~L~k-lkg~~I~sVaw~~~~~~~~st~~iLiGt~-~G~i~e~~i~~~~~~~~~~k~v~~l~~~~~~I~gi~~~~~~ 177 (936)
.+.+.... ..+..+.++++++ .+.+.+++. .|.|+....+ + .+.. +.++.....+.+|.+..
T Consensus 92 g~~~~~~~~~~~~~~~~i~~~~-------~g~l~v~~~~~~~i~~~~~~-g-----~~~~-~~~~~~~~~~~~i~~d~-- 155 (300)
T 2qc5_A 92 GGFTEYPLPQPDSGPYGITEGL-------NGDIWFTQLNGDRIGKLTAD-G-----TIYE-YDLPNKGSYPAFITLGS-- 155 (300)
T ss_dssp SCEEEEECSSTTCCEEEEEECS-------TTCEEEEETTTTEEEEECTT-S-----CEEE-EECSSTTCCEEEEEECT--
T ss_pred CCeEEecCCCCCCCCccceECC-------CCCEEEEccCCCeEEEECCC-C-----CEEE-ccCCCCCCCceeEEECC--
Confidence 33332211 1245788999983 246788765 5677765433 1 1222 23442123467777652
Q ss_pred cCCCceEEEEEEC-CCeEEEEec
Q 002318 178 LSNGTRYYVMAVT-PTRLYSFTG 199 (936)
Q Consensus 178 ~~~~~~~~i~ast-~~rly~f~~ 199 (936)
..+ +.+++. ..+++.|..
T Consensus 156 ---~g~-l~v~~~~~~~i~~~~~ 174 (300)
T 2qc5_A 156 ---DNA-LWFTENQNNSIGRITN 174 (300)
T ss_dssp ---TSS-EEEEETTTTEEEEECT
T ss_pred ---CCC-EEEEecCCCeEEEECC
Confidence 123 333333 567887754
No 210
>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A
Probab=92.42 E-value=0.52 Score=57.37 Aligned_cols=110 Identities=17% Similarity=0.207 Sum_probs=74.1
Q ss_pred CCceeEEEEe-CCEEEEEecCCeEEEEeCCCCCceeeEcCCCC-CCccceeEEEeCCCCCeEEEEeecCCCccEEEEecC
Q 002318 21 RGVITCMSAG-NDVIVLGTSKGWLIRHDFGAGDSYDIDLSAGR-PGEQSIHKVFVDPGGSHCIATIVGSGGAETFYTHAK 98 (936)
Q Consensus 21 ~~~i~~l~v~-~n~l~l~~~~g~l~ridl~~~~~~~~~l~~~~-~~~~~i~~i~lDp~G~hlli~~~~~~~g~~~Y~~~~ 98 (936)
...|.++... ++.||+|+.+| |+++|........+..|... .....|..|+.|+.|..+.|.|. +| .++++..
T Consensus 145 ~~~i~~i~~d~~g~lWigt~~G-l~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~~~~lWigt~---~G-l~~~~~~ 219 (758)
T 3ott_A 145 NNTIYSIIRTKDNQIYVGTYNG-LCRYIPSNGKFEGIPLPVHSSQSNLFVNSLLEDTTRQCVWIGTE---GY-LFQYFPS 219 (758)
T ss_dssp CSCEEEEEECTTCCEEEEETTE-EEEEETTTTEEEEECCCCCTTCSSCCEEEEEEETTTTEEEEEEE---EE-EEEEETT
T ss_pred CCeEEEEEEcCCCCEEEEeCCC-HhhCccCCCceEEecCCCccccccceeEEEEEECCCCEEEEEEC---CC-CeEEcCC
Confidence 3468888876 78999999865 88999843444444444221 11245899999999888888887 44 5566655
Q ss_pred CCCceeccCCCCceEEEEEecCCCCCCCCcceEEEEcCCCcEEEE
Q 002318 99 WSKPRVLSKLKGLVVNAVAWNRQQITEASTKEIILGTDTGQLHEM 143 (936)
Q Consensus 99 ~~k~k~L~klkg~~I~sVaw~~~~~~~~st~~iLiGt~~G~i~e~ 143 (936)
..+.+....+.+..|.+++-+ +.+.+.|||.+| |+.+
T Consensus 220 ~~~~~~~~~l~~~~i~~i~~d-------~~g~lWigT~~G-l~~~ 256 (758)
T 3ott_A 220 TGQIKQTEAFHNNSIKSLALD-------GNGDLLAGTDNG-LYVY 256 (758)
T ss_dssp TTEEEEEEEEEEEEEEEEEEC-------TTCCEEEEETTE-EEEE
T ss_pred CCeEEeccCCCCCeEEEEEEc-------CCCCEEEEeCCc-eeEE
Confidence 544444433345578888876 246899999888 5544
No 211
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=92.39 E-value=0.25 Score=52.76 Aligned_cols=108 Identities=8% Similarity=0.077 Sum_probs=67.0
Q ss_pred CceeEEEEeCC-EEEEEecCCeEEEEeCCCCCceeeEcCCCCCCccceeEEEeCCCCCeEEEEeecCCCccEEEEecCCC
Q 002318 22 GVITCMSAGND-VIVLGTSKGWLIRHDFGAGDSYDIDLSAGRPGEQSIHKVFVDPGGSHCIATIVGSGGAETFYTHAKWS 100 (936)
Q Consensus 22 ~~i~~l~v~~n-~l~l~~~~g~l~ridl~~~~~~~~~l~~~~~~~~~i~~i~lDp~G~hlli~~~~~~~g~~~Y~~~~~~ 100 (936)
..+.++++.++ .+|+|+.+|.|+++|........+..+. ..+..+.+|+.| ++.+++. +|..+.++.. .
T Consensus 215 ~~~~~~~~~~~g~l~v~t~~~gl~~~~~~g~~~~~~~~~~-----~~~~~~~~~~~g-~l~v~t~---~ggl~~~d~~-g 284 (330)
T 3hxj_A 215 WTVTRPAISEDGTIYVTSLDGHLYAINPDGTEKWRFKTGK-----RIESSPVIGNTD-TIYFGSY---DGHLYAINPD-G 284 (330)
T ss_dssp CCCSCCEECTTSCEEEEETTTEEEEECTTSCEEEEEECSS-----CCCSCCEECTTS-CEEEECT---TCEEEEECTT-S
T ss_pred cceeceEECCCCeEEEEcCCCeEEEECCCCCEeEEeeCCC-----CccccceEcCCC-eEEEecC---CCCEEEECCC-C
Confidence 45788888865 9999999999999987545455554432 223345667767 5777777 6677666642 2
Q ss_pred CceeccCCCCceEEEEEecCCCCCCCCcceEEEEcCCCcEEEEEEe
Q 002318 101 KPRVLSKLKGLVVNAVAWNRQQITEASTKEIILGTDTGQLHEMAVD 146 (936)
Q Consensus 101 k~k~L~klkg~~I~sVaw~~~~~~~~st~~iLiGt~~G~i~e~~i~ 146 (936)
+...-..+.+..+.+++.+ ..+.+.+||.+|.++....+
T Consensus 285 ~~~~~~~~~~~~~~~~~~d-------~~g~l~~gt~~G~~~~~~~~ 323 (330)
T 3hxj_A 285 TEKWNFETGSWIIATPVID-------ENGTIYFGTRNGKFYALFNL 323 (330)
T ss_dssp CEEEEEECSSCCCSCCEEC-------TTCCEEEECTTSCEEEEEC-
T ss_pred cEEEEEEcCCccccceEEc-------CCCEEEEEcCCCeEEEEecc
Confidence 2111111223334444443 24689999999988876543
No 212
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=92.38 E-value=10 Score=40.36 Aligned_cols=160 Identities=9% Similarity=0.073 Sum_probs=84.6
Q ss_pred CceeEEEEe-CCEEEEEecCCeEEEEeCCCCCceeeEcCCCCCCccceeEEEeCCCCCeEEEEeecC----CCccEEEEe
Q 002318 22 GVITCMSAG-NDVIVLGTSKGWLIRHDFGAGDSYDIDLSAGRPGEQSIHKVFVDPGGSHCIATIVGS----GGAETFYTH 96 (936)
Q Consensus 22 ~~i~~l~v~-~n~l~l~~~~g~l~ridl~~~~~~~~~l~~~~~~~~~i~~i~lDp~G~hlli~~~~~----~~g~~~Y~~ 96 (936)
..+.+++.. ++-+++++.+ .|+++|.....+..+.-.........++.+.+||.|. +.+++... ..+..|.+.
T Consensus 90 ~~v~~i~~~~dg~l~v~~~~-gl~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~-l~v~~~~~~~~~~~~~l~~~~ 167 (326)
T 2ghs_A 90 FMGSALAKISDSKQLIASDD-GLFLRDTATGVLTLHAELESDLPGNRSNDGRMHPSGA-LWIGTMGRKAETGAGSIYHVA 167 (326)
T ss_dssp SCEEEEEEEETTEEEEEETT-EEEEEETTTCCEEEEECSSTTCTTEEEEEEEECTTSC-EEEEEEETTCCTTCEEEEEEE
T ss_pred CcceEEEEeCCCeEEEEECC-CEEEEECCCCcEEEEeeCCCCCCCCCCCCEEECCCCC-EEEEeCCCcCCCCceEEEEEe
Confidence 457888874 5678888865 4999999333343332111111124688999999998 45544310 125666666
Q ss_pred cCCCCceeccCCCCceEEEEEecCCCCCCCCcceEEE-EcCCCcEEEEEEecCCc-ccceeeEEeeeCCCCCceeeEEEE
Q 002318 97 AKWSKPRVLSKLKGLVVNAVAWNRQQITEASTKEIIL-GTDTGQLHEMAVDEKDK-REKYIKLLFELNELPEAFMGLQME 174 (936)
Q Consensus 97 ~~~~k~k~L~klkg~~I~sVaw~~~~~~~~st~~iLi-Gt~~G~i~e~~i~~~~~-~~~~~k~v~~l~~~~~~I~gi~~~ 174 (936)
..+.+.+.. ......+++|+++ .+.+.+ .+.++.|+.+.++...+ .....+.+..++...+...|+.+.
T Consensus 168 --~g~~~~~~~-~~~~~~~i~~s~d------g~~lyv~~~~~~~I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d 238 (326)
T 2ghs_A 168 --KGKVTKLFA-DISIPNSICFSPD------GTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCD 238 (326)
T ss_dssp --TTEEEEEEE-EESSEEEEEECTT------SCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEEC
T ss_pred --CCcEEEeeC-CCcccCCeEEcCC------CCEEEEEECCCCEEEEEEcccccCCcccCceEEEECCCCCCCCCeeEEC
Confidence 233333321 1124568899843 123434 45568888887751111 111112223343222446777775
Q ss_pred eeccCCCceEEEEEEC--CCeEEEEec
Q 002318 175 TASLSNGTRYYVMAVT--PTRLYSFTG 199 (936)
Q Consensus 175 ~~~~~~~~~~~i~ast--~~rly~f~~ 199 (936)
. + +. +|+++ ..+|+.|..
T Consensus 239 ~-----~-G~-lwva~~~~~~v~~~d~ 258 (326)
T 2ghs_A 239 A-----E-GH-IWNARWGEGAVDRYDT 258 (326)
T ss_dssp T-----T-SC-EEEEEETTTEEEEECT
T ss_pred C-----C-CC-EEEEEeCCCEEEEECC
Confidence 2 1 22 33343 567887753
No 213
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=92.35 E-value=2.8 Score=47.17 Aligned_cols=50 Identities=16% Similarity=0.184 Sum_probs=39.9
Q ss_pred HHHHchhhHHHHHHhcCChh----hHHHHHHHHHHHHHhcCCHHHHHHHHHHhc
Q 002318 369 KVYLDMKEYAAALANCRDPL----QRDQVYLVQAEAAFATKDFHRAASFYAKIN 418 (936)
Q Consensus 369 ~~ll~~~~f~~Al~~~~~~~----~~~~I~~~~~~~L~~~g~y~~Aa~~y~~~~ 418 (936)
..++..|+|++|++.++... .-.......|.-++..|+|++|...|.+..
T Consensus 47 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 100 (514)
T 2gw1_A 47 ACYVSVGDLKKVVEMSTKALELKPDYSKVLLRRASANEGLGKFADAMFDLSVLS 100 (514)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 35788899999999976321 223677788999999999999999998764
No 214
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=92.22 E-value=1.6 Score=41.05 Aligned_cols=49 Identities=14% Similarity=0.020 Sum_probs=38.5
Q ss_pred HHHchhhHHHHHHhcCCh----hhHHHHHHHHHHHHHhcCCHHHHHHHHHHhc
Q 002318 370 VYLDMKEYAAALANCRDP----LQRDQVYLVQAEAAFATKDFHRAASFYAKIN 418 (936)
Q Consensus 370 ~ll~~~~f~~Al~~~~~~----~~~~~I~~~~~~~L~~~g~y~~Aa~~y~~~~ 418 (936)
.++..|+|++|++..+.. .....+....|..++..|++++|...|.+..
T Consensus 17 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 69 (186)
T 3as5_A 17 SHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSL 69 (186)
T ss_dssp HHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 477889999999987641 2235677788899999999999999888764
No 215
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=92.21 E-value=5.9 Score=40.85 Aligned_cols=151 Identities=12% Similarity=0.051 Sum_probs=86.2
Q ss_pred ceeEEEE--eCCEEEEEec--CCeEEEEeCCCCCceeeEcCCCCCCccceeEEEeCCCCCeEEEEeecCCCccEEEEecC
Q 002318 23 VITCMSA--GNDVIVLGTS--KGWLIRHDFGAGDSYDIDLSAGRPGEQSIHKVFVDPGGSHCIATIVGSGGAETFYTHAK 98 (936)
Q Consensus 23 ~i~~l~v--~~n~l~l~~~--~g~l~ridl~~~~~~~~~l~~~~~~~~~i~~i~lDp~G~hlli~~~~~~~g~~~Y~~~~ 98 (936)
...++++ .++.++++.. ++.|.++|.....+..+..+ ....+..|.+||.|. ++++.. +++..+.+...
T Consensus 78 ~p~~i~~~~~~g~l~v~~~~~~~~i~~~d~~g~~~~~~~~~----~~~~~~~i~~~~~g~-l~v~~~--~~~~i~~~~~~ 150 (286)
T 1q7f_A 78 YPNRVAVVRNSGDIIVTERSPTHQIQIYNQYGQFVRKFGAT----ILQHPRGVTVDNKGR-IIVVEC--KVMRVIIFDQN 150 (286)
T ss_dssp SEEEEEEETTTTEEEEEECGGGCEEEEECTTSCEEEEECTT----TCSCEEEEEECTTSC-EEEEET--TTTEEEEECTT
T ss_pred CceEEEEEcCCCeEEEEcCCCCCEEEEECCCCcEEEEecCc----cCCCceEEEEeCCCC-EEEEEC--CCCEEEEEcCC
Confidence 4688898 4678888874 78999999744434444332 124678999999996 555543 14566666543
Q ss_pred CCCceeccC-CCCceEEEEEecCCCCCCCCcceEEEEc-CCCcEEEEEEecCCcccceeeEEeeeCCCCCceeeEEEEee
Q 002318 99 WSKPRVLSK-LKGLVVNAVAWNRQQITEASTKEIILGT-DTGQLHEMAVDEKDKREKYIKLLFELNELPEAFMGLQMETA 176 (936)
Q Consensus 99 ~~k~k~L~k-lkg~~I~sVaw~~~~~~~~st~~iLiGt-~~G~i~e~~i~~~~~~~~~~k~v~~l~~~~~~I~gi~~~~~ 176 (936)
....+.+.. -....+.+|++++. +.+++++ .++.|+.+..+. +.++.+ ...+....+.+|.+..
T Consensus 151 g~~~~~~~~~~~~~~p~~i~~~~~-------g~l~v~~~~~~~i~~~~~~g-----~~~~~~-~~~g~~~~p~~i~~d~- 216 (286)
T 1q7f_A 151 GNVLHKFGCSKHLEFPNGVVVNDK-------QEIFISDNRAHCVKVFNYEG-----QYLRQI-GGEGITNYPIGVGINS- 216 (286)
T ss_dssp SCEEEEEECTTTCSSEEEEEECSS-------SEEEEEEGGGTEEEEEETTC-----CEEEEE-SCTTTSCSEEEEEECT-
T ss_pred CCEEEEeCCCCccCCcEEEEECCC-------CCEEEEECCCCEEEEEcCCC-----CEEEEE-ccCCccCCCcEEEECC-
Confidence 332333321 11235889999832 4677764 467787765432 122221 2221113467888762
Q ss_pred ccCCCceEEEEEEC-CC-eEEEEec
Q 002318 177 SLSNGTRYYVMAVT-PT-RLYSFTG 199 (936)
Q Consensus 177 ~~~~~~~~~i~ast-~~-rly~f~~ 199 (936)
+ +.++++.. .. +++.|..
T Consensus 217 ----~-G~l~v~~~~~~~~i~~~~~ 236 (286)
T 1q7f_A 217 ----N-GEILIADNHNNFNLTIFTQ 236 (286)
T ss_dssp ----T-CCEEEEECSSSCEEEEECT
T ss_pred ----C-CCEEEEeCCCCEEEEEECC
Confidence 1 23444443 43 7887753
No 216
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=92.18 E-value=13 Score=38.97 Aligned_cols=56 Identities=7% Similarity=-0.110 Sum_probs=38.2
Q ss_pred EEEEEecCCeEEEEeCCCCCceeeEcCCCCCCccceeEEEeCCCCCeEEEEeecCCCccEEEEec
Q 002318 33 VIVLGTSKGWLIRHDFGAGDSYDIDLSAGRPGEQSIHKVFVDPGGSHCIATIVGSGGAETFYTHA 97 (936)
Q Consensus 33 ~l~l~~~~g~l~ridl~~~~~~~~~l~~~~~~~~~i~~i~lDp~G~hlli~~~~~~~g~~~Y~~~ 97 (936)
++|.++.+|.|+++|... .+..+..+ ...+..+.+||.|. +++|+. +++..+.++.
T Consensus 59 l~~~d~~~~~i~~~~~~g-~~~~~~~~-----~~~~~gl~~d~dG~-l~v~~~--~~~~v~~~~~ 114 (305)
T 3dr2_A 59 LVWSDLVGRRVLGWREDG-TVDVLLDA-----TAFTNGNAVDAQQR-LVHCEH--GRRAITRSDA 114 (305)
T ss_dssp EEEEETTTTEEEEEETTS-CEEEEEES-----CSCEEEEEECTTSC-EEEEET--TTTEEEEECT
T ss_pred EEEEECCCCEEEEEeCCC-CEEEEeCC-----CCccceeeECCCCC-EEEEEC--CCCEEEEECC
Confidence 678888999999999832 24444433 24678999999997 677764 1245555554
No 217
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=92.04 E-value=6.8 Score=41.11 Aligned_cols=154 Identities=6% Similarity=0.020 Sum_probs=88.6
Q ss_pred ceeEEEEeCC--EEEEEe-cCCeEEEEeCCC-CCcee-----eEcCCCCCCccceeEEEeCCCCCeEEEEeecCCCccEE
Q 002318 23 VITCMSAGND--VIVLGT-SKGWLIRHDFGA-GDSYD-----IDLSAGRPGEQSIHKVFVDPGGSHCIATIVGSGGAETF 93 (936)
Q Consensus 23 ~i~~l~v~~n--~l~l~~-~~g~l~ridl~~-~~~~~-----~~l~~~~~~~~~i~~i~lDp~G~hlli~~~~~~~g~~~ 93 (936)
.+.+++++.+ .++++. .+|.|.++|+.. ..+.. +..+. ...+..+.++|.|..++++.. .++...
T Consensus 130 ~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~pdg~~l~~~~~--~~~~i~ 203 (343)
T 1ri6_A 130 GCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVE----GAGPRHMVFHPNEQYAYCVNE--LNSSVD 203 (343)
T ss_dssp TBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEECST----TCCEEEEEECTTSSEEEEEET--TTTEEE
T ss_pred CceEEEECCCCCEEEEecCCCCEEEEEEecCCCceeeecccccccCC----CCCcceEEECCCCCEEEEEeC--CCCEEE
Confidence 4677888754 777776 789999999933 44432 22321 246788999999999888763 146665
Q ss_pred EEecCC--CCce---eccCCC-----CceEEEEEecCCCCCCCCcceEEEEc-CCCcEEEEEEecCCcccceeeEEeeeC
Q 002318 94 YTHAKW--SKPR---VLSKLK-----GLVVNAVAWNRQQITEASTKEIILGT-DTGQLHEMAVDEKDKREKYIKLLFELN 162 (936)
Q Consensus 94 Y~~~~~--~k~k---~L~klk-----g~~I~sVaw~~~~~~~~st~~iLiGt-~~G~i~e~~i~~~~~~~~~~k~v~~l~ 162 (936)
.+.... .+.+ .+..+. ...+.+++|+++ .+.++++. .+|.|....+....+ ..+.+..++
T Consensus 204 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~s~d------g~~l~v~~~~~~~i~v~d~~~~~~---~~~~~~~~~ 274 (343)
T 1ri6_A 204 VWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPD------GRHLYACDRTASLITVFSVSEDGS---VLSKEGFQP 274 (343)
T ss_dssp EEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTT------SSEEEEEETTTTEEEEEEECTTSC---CEEEEEEEE
T ss_pred EEEecCCCCcEEEEeeccccCccccccCCccceEECCC------CCEEEEEecCCCEEEEEEEcCCCC---ceEEeeeec
Confidence 555422 2221 121111 135778999843 12455444 578888887763211 133333333
Q ss_pred CCCCceeeEEEEeeccCCCceEEEEEEC-CCeEEEE
Q 002318 163 ELPEAFMGLQMETASLSNGTRYYVMAVT-PTRLYSF 197 (936)
Q Consensus 163 ~~~~~I~gi~~~~~~~~~~~~~~i~ast-~~rly~f 197 (936)
.. +.+.++.|.. +.+++++++. ...+.-|
T Consensus 275 ~~-~~~~~~~~s~-----dg~~l~~~~~~~~~v~v~ 304 (343)
T 1ri6_A 275 TE-TQPRGFNVDH-----SGKYLIAAGQKSHHISVY 304 (343)
T ss_dssp CS-SSCCCEEECT-----TSSEEEEECTTTCEEEEE
T ss_pred CC-CccceEEECC-----CCCEEEEecCCCCeEEEE
Confidence 21 3378888862 2345655552 4566655
No 218
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=92.01 E-value=0.047 Score=50.76 Aligned_cols=43 Identities=23% Similarity=0.450 Sum_probs=31.1
Q ss_pred ccccccccchhhhhcccccccccccCCCCCCCCEEEEcCCChhHHHhHHHHHhhc
Q 002318 832 RDEDCGVCRRKILVAGRDYRMARGYASVGPMAPFYVFPCGHAFHAQCLIAHVTQC 886 (936)
Q Consensus 832 ~~~~C~~C~k~L~~~~~~~~~~~~~~~~~~~~~fvvFpCgH~fH~~CL~~~~~~~ 886 (936)
....|++|...+..+-...+ ..++.+|||.||.+|+...+...
T Consensus 6 ~~~~C~IC~~~~~~~~~~~~------------~~~~~~CgH~fc~~Ci~~~~~~~ 48 (133)
T 4ap4_A 6 GTVSCPICMDGYSEIVQNGR------------LIVSTECGHVFCSQCLRDSLKNA 48 (133)
T ss_dssp CSCBCTTTCCBHHHHHHTTC------------CEEEETTCCEEEHHHHHHHHTTC
T ss_pred CCCCCcccChhhhCcccccc------------CeEecCCCChhhHHHHHHHHHhC
Confidence 45689999988765200001 46888999999999999987543
No 219
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=91.95 E-value=9.5 Score=39.64 Aligned_cols=164 Identities=12% Similarity=0.109 Sum_probs=87.3
Q ss_pred CceeEEEEeC--CEEEEEecCCeEEEEeCCCCCceee-EcCCCCCCccceeEEEeCCCCCeEEEEeecCCC---------
Q 002318 22 GVITCMSAGN--DVIVLGTSKGWLIRHDFGAGDSYDI-DLSAGRPGEQSIHKVFVDPGGSHCIATIVGSGG--------- 89 (936)
Q Consensus 22 ~~i~~l~v~~--n~l~l~~~~g~l~ridl~~~~~~~~-~l~~~~~~~~~i~~i~lDp~G~hlli~~~~~~~--------- 89 (936)
+.+.++++.. +.+|++...+.|+++|.. .++..+ .-.........++.+.+||.|. +.+++.. +
T Consensus 71 ~~~~~i~~~~~~g~l~v~~~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~i~~d~~g~-l~v~~~~--~~~~~~~~~~ 146 (314)
T 1pjx_A 71 GIPAGCQCDRDANQLFVADMRLGLLVVQTD-GTFEEIAKKDSEGRRMQGCNDCAFDYEGN-LWITAPA--GEVAPADYTR 146 (314)
T ss_dssp CCEEEEEECSSSSEEEEEETTTEEEEEETT-SCEEECCSBCTTSCBCBCCCEEEECTTSC-EEEEECB--CBCTTSCCCB
T ss_pred CCCceEEEecCCCcEEEEECCCCEEEEeCC-CCEEEEEeccCCCccccCCcCEEECCCCC-EEEEecC--cccccccccc
Confidence 3578888875 589999987799999986 444332 1111111124688999999996 5555431 2
Q ss_pred ------ccEEEEecCCCCceeccCCCCceEEEEEecCCCCCCCCcceEEEE-cCCCcEEEEEEecCCcccceeeEEeeeC
Q 002318 90 ------AETFYTHAKWSKPRVLSKLKGLVVNAVAWNRQQITEASTKEIILG-TDTGQLHEMAVDEKDKREKYIKLLFELN 162 (936)
Q Consensus 90 ------g~~~Y~~~~~~k~k~L~klkg~~I~sVaw~~~~~~~~st~~iLiG-t~~G~i~e~~i~~~~~~~~~~k~v~~l~ 162 (936)
+..+.++.. .+.+.+.. .......++|+.- ...+.+.+.++ +.++.|+.+.++.. +.....+.+..++
T Consensus 147 ~~~~~~~~l~~~~~~-g~~~~~~~-~~~~~~~i~~~~~--~d~dg~~l~v~~~~~~~i~~~~~~~~-g~~~~~~~~~~~~ 221 (314)
T 1pjx_A 147 SMQEKFGSIYCFTTD-GQMIQVDT-AFQFPNGIAVRHM--NDGRPYQLIVAETPTKKLWSYDIKGP-AKIENKKVWGHIP 221 (314)
T ss_dssp TTSSSCEEEEEECTT-SCEEEEEE-EESSEEEEEEEEC--TTSCEEEEEEEETTTTEEEEEEEEET-TEEEEEEEEEECC
T ss_pred cccCCCCeEEEECCC-CCEEEecc-CCCCcceEEEecc--cCCCCCEEEEEECCCCeEEEEECCCC-CccccceEEEECC
Confidence 456666544 33333221 1124577888710 00012245555 45678888776522 1111122333444
Q ss_pred CCC-CceeeEEEEeeccCCCceEEEEEECCCeEEEEec
Q 002318 163 ELP-EAFMGLQMETASLSNGTRYYVMAVTPTRLYSFTG 199 (936)
Q Consensus 163 ~~~-~~I~gi~~~~~~~~~~~~~~i~ast~~rly~f~~ 199 (936)
... +.+.+|.+.. +.+.++-..+...++.|..
T Consensus 222 ~~~~~~p~~i~~d~-----~G~l~v~~~~~~~i~~~d~ 254 (314)
T 1pjx_A 222 GTHEGGADGMDFDE-----DNNLLVANWGSSHIEVFGP 254 (314)
T ss_dssp CCSSCEEEEEEEBT-----TCCEEEEEETTTEEEEECT
T ss_pred CCCCCCCCceEECC-----CCCEEEEEcCCCEEEEEcC
Confidence 321 3467777752 1122222225678888854
No 220
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=91.85 E-value=2.9 Score=44.81 Aligned_cols=141 Identities=11% Similarity=0.013 Sum_probs=82.5
Q ss_pred eEEEEeC---CEEEEEecCCeEEEEeCCCCCceeeEcCCCCCCccceeEEEeCCCCCeEEEEeecCCCccEEEEecCCCC
Q 002318 25 TCMSAGN---DVIVLGTSKGWLIRHDFGAGDSYDIDLSAGRPGEQSIHKVFVDPGGSHCIATIVGSGGAETFYTHAKWSK 101 (936)
Q Consensus 25 ~~l~v~~---n~l~l~~~~g~l~ridl~~~~~~~~~l~~~~~~~~~i~~i~lDp~G~hlli~~~~~~~g~~~Y~~~~~~k 101 (936)
.+.+.+. .++|.+...|.|+++|.....+..+..+ ..+..+..+|.|.. ++++. +| .+.++....+
T Consensus 52 egp~~~~~~~~l~~~d~~~~~i~~~d~~~~~~~~~~~~------~~v~~i~~~~dg~l-~v~~~---~g-l~~~d~~~g~ 120 (326)
T 2ghs_A 52 EGPTFDPASGTAWWFNILERELHELHLASGRKTVHALP------FMGSALAKISDSKQ-LIASD---DG-LFLRDTATGV 120 (326)
T ss_dssp EEEEEETTTTEEEEEEGGGTEEEEEETTTTEEEEEECS------SCEEEEEEEETTEE-EEEET---TE-EEEEETTTCC
T ss_pred cCCeEeCCCCEEEEEECCCCEEEEEECCCCcEEEEECC------CcceEEEEeCCCeE-EEEEC---CC-EEEEECCCCc
Confidence 4556654 3667777889999999943444444443 46888999999974 45555 45 6566654445
Q ss_pred ceeccCC----CCceEEEEEecCCCCCCCCcceEEEEcC-------CCcEEEEEEecCCcccceeeEEeeeCCCCCceee
Q 002318 102 PRVLSKL----KGLVVNAVAWNRQQITEASTKEIILGTD-------TGQLHEMAVDEKDKREKYIKLLFELNELPEAFMG 170 (936)
Q Consensus 102 ~k~L~kl----kg~~I~sVaw~~~~~~~~st~~iLiGt~-------~G~i~e~~i~~~~~~~~~~k~v~~l~~~~~~I~g 170 (936)
.+.+... .+..+.+++|++ .|.+.+|+. .|.||.+. + + .++.+..-. ....+
T Consensus 121 ~~~~~~~~~~~~~~~~~~i~~d~-------~G~l~v~~~~~~~~~~~~~l~~~~-~-g-----~~~~~~~~~---~~~~~ 183 (326)
T 2ghs_A 121 LTLHAELESDLPGNRSNDGRMHP-------SGALWIGTMGRKAETGAGSIYHVA-K-G-----KVTKLFADI---SIPNS 183 (326)
T ss_dssp EEEEECSSTTCTTEEEEEEEECT-------TSCEEEEEEETTCCTTCEEEEEEE-T-T-----EEEEEEEEE---SSEEE
T ss_pred EEEEeeCCCCCCCCCCCCEEECC-------CCCEEEEeCCCcCCCCceEEEEEe-C-C-----cEEEeeCCC---cccCC
Confidence 4444322 234688999983 246888875 36677765 2 1 123322111 22467
Q ss_pred EEEEeeccCCCceEEEEEEC-CCeEEEEe
Q 002318 171 LQMETASLSNGTRYYVMAVT-PTRLYSFT 198 (936)
Q Consensus 171 i~~~~~~~~~~~~~~i~ast-~~rly~f~ 198 (936)
+.|.. +.+.+.++.+ ..+|+.|.
T Consensus 184 i~~s~-----dg~~lyv~~~~~~~I~~~d 207 (326)
T 2ghs_A 184 ICFSP-----DGTTGYFVDTKVNRLMRVP 207 (326)
T ss_dssp EEECT-----TSCEEEEEETTTCEEEEEE
T ss_pred eEEcC-----CCCEEEEEECCCCEEEEEE
Confidence 77752 2244555544 45677664
No 221
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=91.69 E-value=0.026 Score=47.50 Aligned_cols=36 Identities=19% Similarity=0.521 Sum_probs=27.4
Q ss_pred cccccccccchhhhhcccccccccccCCCCCCCCEEEEc--CCChhHHHhHHHHH
Q 002318 831 DRDEDCGVCRRKILVAGRDYRMARGYASVGPMAPFYVFP--CGHAFHAQCLIAHV 883 (936)
Q Consensus 831 ~~~~~C~~C~k~L~~~~~~~~~~~~~~~~~~~~~fvvFp--CgH~fH~~CL~~~~ 883 (936)
.....|++|-.++.. . +..++| |||.|+..|+.+..
T Consensus 9 ~~~~~CpICle~~~~-----~------------d~~~~p~~CGH~fC~~Cl~~~~ 46 (78)
T 1e4u_A 9 EDPVECPLCMEPLEI-----D------------DINFFPCTCGYQICRFCWHRIR 46 (78)
T ss_dssp CCCCBCTTTCCBCCT-----T------------TTTCCSSTTSCCCCHHHHHHHT
T ss_pred ccCCcCCccCccCcc-----c------------cccccccCCCCCcCHHHHHHHH
Confidence 456689999997754 2 334556 99999999998775
No 222
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=91.58 E-value=1.2 Score=45.04 Aligned_cols=49 Identities=16% Similarity=-0.001 Sum_probs=37.8
Q ss_pred HHHchhhHHHHHHhcCCh----hhHHHHHHHHHHHHHhcCCHHHHHHHHHHhc
Q 002318 370 VYLDMKEYAAALANCRDP----LQRDQVYLVQAEAAFATKDFHRAASFYAKIN 418 (936)
Q Consensus 370 ~ll~~~~f~~Al~~~~~~----~~~~~I~~~~~~~L~~~g~y~~Aa~~y~~~~ 418 (936)
.++..|+|++|+++.+.. .....+....|..++..|+|++|.+.|.+..
T Consensus 46 ~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~ 98 (252)
T 2ho1_A 46 GYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKAL 98 (252)
T ss_dssp HHHHTTCTGGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHcCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 367788999988886531 1234677788999999999999999998765
No 223
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=91.50 E-value=0.042 Score=49.95 Aligned_cols=33 Identities=27% Similarity=0.830 Sum_probs=25.8
Q ss_pred ccccccccchhhhhcccccccccccCCCCCCCCEEEEcCCChhHHHhHHHHH
Q 002318 832 RDEDCGVCRRKILVAGRDYRMARGYASVGPMAPFYVFPCGHAFHAQCLIAHV 883 (936)
Q Consensus 832 ~~~~C~~C~k~L~~~~~~~~~~~~~~~~~~~~~fvvFpCgH~fH~~CL~~~~ 883 (936)
....|.+|...+.. +.. .+|||.||..|+....
T Consensus 14 ~~~~C~iC~~~~~~------------------p~~-~~CgH~fC~~Ci~~~~ 46 (115)
T 3l11_A 14 SECQCGICMEILVE------------------PVT-LPCNHTLCKPCFQSTV 46 (115)
T ss_dssp HHHBCTTTCSBCSS------------------CEE-CTTSCEECHHHHCCCC
T ss_pred CCCCCccCCcccCc------------------eeE-cCCCCHHhHHHHHHHH
Confidence 35679999977665 544 4999999999997654
No 224
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=91.45 E-value=4.1 Score=43.51 Aligned_cols=50 Identities=8% Similarity=-0.076 Sum_probs=39.8
Q ss_pred HHHHchhhHHHHHHhcCC----hhhHHHHHHHHHHHHHhcCCHHHHHHHHHHhc
Q 002318 369 KVYLDMKEYAAALANCRD----PLQRDQVYLVQAEAAFATKDFHRAASFYAKIN 418 (936)
Q Consensus 369 ~~ll~~~~f~~Al~~~~~----~~~~~~I~~~~~~~L~~~g~y~~Aa~~y~~~~ 418 (936)
..++..|+|++|+.+.+. ...-..+....|.-++..|+|++|...|.+..
T Consensus 72 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 125 (368)
T 1fch_A 72 LRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCL 125 (368)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHH
Confidence 348889999999998753 12234577788999999999999999998865
No 225
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=91.44 E-value=0.054 Score=49.53 Aligned_cols=38 Identities=24% Similarity=0.688 Sum_probs=29.4
Q ss_pred ecccccccccchhhhhcccccccccccCCCCCCCCEEEEcCCChhHHHhHHHHHhhc
Q 002318 830 IDRDEDCGVCRRKILVAGRDYRMARGYASVGPMAPFYVFPCGHAFHAQCLIAHVTQC 886 (936)
Q Consensus 830 i~~~~~C~~C~k~L~~~~~~~~~~~~~~~~~~~~~fvvFpCgH~fH~~CL~~~~~~~ 886 (936)
+...-.|.+|...+.. + ++.+|||.|+..|+...+...
T Consensus 15 ~~~~~~C~IC~~~~~~------------------p-~~~~CgH~fC~~Ci~~~~~~~ 52 (118)
T 3hct_A 15 LESKYECPICLMALRE------------------A-VQTPCGHRFCKACIIKSIRDA 52 (118)
T ss_dssp CCGGGBCTTTCSBCSS------------------E-EECTTSCEEEHHHHHHHHHHH
T ss_pred CCCCCCCCcCChhhcC------------------e-EECCcCChhhHHHHHHHHhhC
Confidence 4456689999977765 5 446999999999999876543
No 226
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=91.37 E-value=0.032 Score=50.35 Aligned_cols=34 Identities=26% Similarity=0.588 Sum_probs=26.6
Q ss_pred cccccccchhhhhcccccccccccCCCCCCCCEEEEcCCChhHHHhHHHHHhh
Q 002318 833 DEDCGVCRRKILVAGRDYRMARGYASVGPMAPFYVFPCGHAFHAQCLIAHVTQ 885 (936)
Q Consensus 833 ~~~C~~C~k~L~~~~~~~~~~~~~~~~~~~~~fvvFpCgH~fH~~CL~~~~~~ 885 (936)
...|.+|...+.. +. +.||||.||..|+...+..
T Consensus 21 ~~~C~IC~~~~~~------------------p~-~~~CgH~fC~~Ci~~~~~~ 54 (112)
T 1jm7_A 21 ILECPICLELIKE------------------PV-STKCDHIFCKFCMLKLLNQ 54 (112)
T ss_dssp HTSCSSSCCCCSS------------------CC-BCTTSCCCCSHHHHHHHHS
T ss_pred CCCCcccChhhcC------------------eE-ECCCCCHHHHHHHHHHHHh
Confidence 4579999886644 33 3699999999999988754
No 227
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=91.20 E-value=9.2 Score=39.24 Aligned_cols=149 Identities=11% Similarity=0.103 Sum_probs=85.3
Q ss_pred CceeEEEEe-CCEEEEEec-CCeEEEEeCCCCCceeeEcCCCCCCccceeEEEeCCCCCeEEEEeecCCCccEEEEecCC
Q 002318 22 GVITCMSAG-NDVIVLGTS-KGWLIRHDFGAGDSYDIDLSAGRPGEQSIHKVFVDPGGSHCIATIVGSGGAETFYTHAKW 99 (936)
Q Consensus 22 ~~i~~l~v~-~n~l~l~~~-~g~l~ridl~~~~~~~~~l~~~~~~~~~i~~i~lDp~G~hlli~~~~~~~g~~~Y~~~~~ 99 (936)
..+.++++. ++.+|++.. +|.|+++|.. ..+..+.+|. ....+..+.+||.|. +.++.. +++..+.++. .
T Consensus 57 ~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~---~~~~~~~i~~~~~g~-l~v~~~--~~~~i~~~d~-~ 128 (299)
T 2z2n_A 57 AKVMCLTISSDGEVWFTENAANKIGRITKK-GIIKEYTLPN---PDSAPYGITEGPNGD-IWFTEM--NGNRIGRITD-D 128 (299)
T ss_dssp CCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEECSS---TTCCEEEEEECTTSC-EEEEET--TTTEEEEECT-T
T ss_pred CceeeEEECCCCCEEEeCCCCCeEEEECCC-CcEEEEeCCC---cCCCceeeEECCCCC-EEEEec--CCceEEEECC-C
Confidence 457889884 557888876 7899999984 3355566552 135689999999985 555543 1455655655 3
Q ss_pred CCceecc-CCCCceEEEEEecCCCCCCCCcceEEEEcC-CCcEEEEEEecCCcccceeeEEeeeCCCCCceeeEEEEeec
Q 002318 100 SKPRVLS-KLKGLVVNAVAWNRQQITEASTKEIILGTD-TGQLHEMAVDEKDKREKYIKLLFELNELPEAFMGLQMETAS 177 (936)
Q Consensus 100 ~k~k~L~-klkg~~I~sVaw~~~~~~~~st~~iLiGt~-~G~i~e~~i~~~~~~~~~~k~v~~l~~~~~~I~gi~~~~~~ 177 (936)
.+..... ...+..+.++++++. +.+.+++. .+.|+.... .+ .+.. +.++.....+.+|.+..
T Consensus 129 g~~~~~~~~~~~~~~~~i~~~~~-------g~l~v~~~~~~~i~~~~~-~g-----~~~~-~~~~~~~~~~~~i~~~~-- 192 (299)
T 2z2n_A 129 GKIREYELPNKGSYPSFITLGSD-------NALWFTENQNNAIGRITE-SG-----DITE-FKIPTPASGPVGITKGN-- 192 (299)
T ss_dssp CCEEEEECSSTTCCEEEEEECTT-------SCEEEEETTTTEEEEECT-TC-----CEEE-EECSSTTCCEEEEEECT--
T ss_pred CCEEEecCCCCCCCCceEEEcCC-------CCEEEEeCCCCEEEEEcC-CC-----cEEE-eeCCCCCCcceeEEECC--
Confidence 3333221 113457889999832 36777764 477776644 11 1222 23332223466777652
Q ss_pred cCCCceEEEEEEC-CCeEEEEe
Q 002318 178 LSNGTRYYVMAVT-PTRLYSFT 198 (936)
Q Consensus 178 ~~~~~~~~i~ast-~~rly~f~ 198 (936)
+.+ +.+++. ...++.|.
T Consensus 193 ---~g~-l~v~~~~~~~i~~~~ 210 (299)
T 2z2n_A 193 ---DDA-LWFVEIIGNKIGRIT 210 (299)
T ss_dssp ---TSS-EEEEETTTTEEEEEC
T ss_pred ---CCC-EEEEccCCceEEEEC
Confidence 112 333332 56677664
No 228
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}
Probab=91.16 E-value=0.042 Score=50.04 Aligned_cols=53 Identities=21% Similarity=0.428 Sum_probs=0.9
Q ss_pred ccccccccchhhhhcccccccccccCCCCCCCCEEEEcCCChhHHHhHHHHHhh
Q 002318 832 RDEDCGVCRRKILVAGRDYRMARGYASVGPMAPFYVFPCGHAFHAQCLIAHVTQ 885 (936)
Q Consensus 832 ~~~~C~~C~k~L~~~~~~~~~~~~~~~~~~~~~fvvFpCgH~fH~~CL~~~~~~ 885 (936)
..+.|++|...+....+.-+ .+.....+...+.+.-+|||.||..|+...+..
T Consensus 47 ~~d~CaICl~~~~~~c~~C~-~~~~~~~~~~~~v~~~~C~H~FH~~CI~~Wl~~ 99 (117)
T 4a0k_B 47 VVDNCAICRNHIMDLCIECQ-ANQASATSEECTVAWGVCNHAFHFHCISRWLKT 99 (117)
T ss_dssp CC----------------------------------------------------
T ss_pred CCCcCeECChhhcCcChhhh-cccccccccccccccCCcCceEcHHHHHHHHHc
Confidence 35789999998876221000 000000111223444589999999999887644
No 229
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=91.05 E-value=5.2 Score=39.92 Aligned_cols=49 Identities=10% Similarity=0.186 Sum_probs=36.5
Q ss_pred HHHchhhHHHHHHhcCChh---hHHHHHHHHHHHHHhcCCHHHHHHHHHHhc
Q 002318 370 VYLDMKEYAAALANCRDPL---QRDQVYLVQAEAAFATKDFHRAASFYAKIN 418 (936)
Q Consensus 370 ~ll~~~~f~~Al~~~~~~~---~~~~I~~~~~~~L~~~g~y~~Aa~~y~~~~ 418 (936)
.++..|+|++|+++.+... .-..+....|.-++..|+|++|...|.+..
T Consensus 14 ~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~ 65 (258)
T 3uq3_A 14 KFYKARQFDEAIEHYNKAWELHKDITYLNNRAAAEYEKGEYETAISTLNDAV 65 (258)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSCCTHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHhccHHHHHHHHHHHHHhhccHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 4677788888888765311 334677788888889999999988887764
No 230
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=90.83 E-value=2.4 Score=50.92 Aligned_cols=114 Identities=11% Similarity=0.024 Sum_probs=74.2
Q ss_pred CceeEEEEeCC--EEEEEec-CC-----eEEEEeC-CCCCceeeEcCCCCC-------------------CccceeEEEe
Q 002318 22 GVITCMSAGND--VIVLGTS-KG-----WLIRHDF-GAGDSYDIDLSAGRP-------------------GEQSIHKVFV 73 (936)
Q Consensus 22 ~~i~~l~v~~n--~l~l~~~-~g-----~l~ridl-~~~~~~~~~l~~~~~-------------------~~~~i~~i~l 73 (936)
..+++++.+.+ .|+.+.. +| .|+++|+ .+....-+..+.... +...|..+-+
T Consensus 37 ~~~~~~~~SpdG~~la~~~~~d~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 116 (741)
T 2ecf_A 37 PTLMKPKVAPDGSRVTFLRGKDSDRNQLDLWSYDIGSGQTRLLVDSKVVLPGTETLSDEEKARRERQRIAAMTGIVDYQW 116 (741)
T ss_dssp CCCEEEEECTTSSEEEEEECCSSCTTEEEEEEEETTTCCEEEEECGGGTC--------------------CCEESCCCEE
T ss_pred CCCCCceEecCCCEEEEEeccCCCCcccEEEEEECCCCceeEccchhhcccccccccchhhhhhhhhhhccccCcceeEE
Confidence 45889999854 7777776 77 8999999 443322222211000 0023778889
Q ss_pred CCCCCeEEEEeecCCCccEEEEecCCC---CceeccCCCCceEEEEEecCCCCCCCCcceEEEEcCCCcEEEEEEec
Q 002318 74 DPGGSHCIATIVGSGGAETFYTHAKWS---KPRVLSKLKGLVVNAVAWNRQQITEASTKEIILGTDTGQLHEMAVDE 147 (936)
Q Consensus 74 Dp~G~hlli~~~~~~~g~~~Y~~~~~~---k~k~L~klkg~~I~sVaw~~~~~~~~st~~iLiGt~~G~i~e~~i~~ 147 (936)
+|.|.++++++. +..+.++.... +.+.+... +..+.+++|+++ .+.|+.++ ++.|+...+..
T Consensus 117 SpDg~~l~~~~~----~~i~~~d~~~~~~~~~~~l~~~-~~~~~~~~~SPD------G~~la~~~-~~~i~~~d~~~ 181 (741)
T 2ecf_A 117 SPDAQRLLFPLG----GELYLYDLKQEGKAAVRQLTHG-EGFATDAKLSPK------GGFVSFIR-GRNLWVIDLAS 181 (741)
T ss_dssp CTTSSEEEEEET----TEEEEEESSSCSTTSCCBCCCS-SSCEEEEEECTT------SSEEEEEE-TTEEEEEETTT
T ss_pred CCCCCEEEEEeC----CcEEEEECCCCCcceEEEcccC-CcccccccCCCC------CCEEEEEe-CCcEEEEecCC
Confidence 999999988875 88887877665 56666543 357999999953 22455554 56787776654
No 231
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=90.59 E-value=18 Score=37.78 Aligned_cols=152 Identities=8% Similarity=-0.014 Sum_probs=84.4
Q ss_pred ceeEEEEeC--CEEEEEec-CCeEEEEeC-CCCC-ceeeEcCCCCCCccceeEEEeCCCCCeEEEEeecCCCc---cEEE
Q 002318 23 VITCMSAGN--DVIVLGTS-KGWLIRHDF-GAGD-SYDIDLSAGRPGEQSIHKVFVDPGGSHCIATIVGSGGA---ETFY 94 (936)
Q Consensus 23 ~i~~l~v~~--n~l~l~~~-~g~l~ridl-~~~~-~~~~~l~~~~~~~~~i~~i~lDp~G~hlli~~~~~~~g---~~~Y 94 (936)
.. +++++. +.++++.. ++.|+++|+ .... ...+... ......+.++|.|.+++++.. ++ ..+.
T Consensus 42 ~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~-----~~~~~~~~~s~dg~~l~~~~~---~~~~~~i~v 112 (331)
T 3u4y_A 42 FV-DTAITSDCSNVVVTSDFCQTLVQIETQLEPPKVVAIQEG-----QSSMADVDITPDDQFAVTVTG---LNHPFNMQS 112 (331)
T ss_dssp EE-EEEECSSSCEEEEEESTTCEEEEEECSSSSCEEEEEEEC-----SSCCCCEEECTTSSEEEECCC---SSSSCEEEE
T ss_pred cc-eEEEcCCCCEEEEEeCCCCeEEEEECCCCceeEEecccC-----CCCccceEECCCCCEEEEecC---CCCcccEEE
Confidence 44 788864 45666655 789999999 4433 3333332 223333889999999994433 32 6666
Q ss_pred EecCCCCceeccCCCCceEEEEEecCCCCCCCCcceEEEEc-CCCc-EEEEEEecCCcccceeeEEeeeCCCCCceeeEE
Q 002318 95 THAKWSKPRVLSKLKGLVVNAVAWNRQQITEASTKEIILGT-DTGQ-LHEMAVDEKDKREKYIKLLFELNELPEAFMGLQ 172 (936)
Q Consensus 95 ~~~~~~k~k~L~klkg~~I~sVaw~~~~~~~~st~~iLiGt-~~G~-i~e~~i~~~~~~~~~~k~v~~l~~~~~~I~gi~ 172 (936)
+.....+...... .+....+++|+++ .+.+++++ .++. |..+.++........-.. .++. .....++.
T Consensus 113 ~d~~~~~~~~~~~-~~~~~~~~~~spd------g~~l~~~~~~~~~~i~~~~~~~~g~~~~~~~~--~~~~-~~~~~~~~ 182 (331)
T 3u4y_A 113 YSFLKNKFISTIP-IPYDAVGIAISPN------GNGLILIDRSSANTVRRFKIDADGVLFDTGQE--FISG-GTRPFNIT 182 (331)
T ss_dssp EETTTTEEEEEEE-CCTTEEEEEECTT------SSCEEEEEETTTTEEEEEEECTTCCEEEEEEE--EECS-SSSEEEEE
T ss_pred EECCCCCeEEEEE-CCCCccceEECCC------CCEEEEEecCCCceEEEEEECCCCcEeecCCc--cccC-CCCccceE
Confidence 6665544332222 2456789999943 12455554 4477 777777643211000012 1222 13467777
Q ss_pred EEeeccCCCceEEEEEEC-CCeEEEEe
Q 002318 173 METASLSNGTRYYVMAVT-PTRLYSFT 198 (936)
Q Consensus 173 ~~~~~~~~~~~~~i~ast-~~rly~f~ 198 (936)
|.. +.++++++.. ...++.|.
T Consensus 183 ~sp-----dg~~l~v~~~~~~~v~v~d 204 (331)
T 3u4y_A 183 FTP-----DGNFAFVANLIGNSIGILE 204 (331)
T ss_dssp ECT-----TSSEEEEEETTTTEEEEEE
T ss_pred ECC-----CCCEEEEEeCCCCeEEEEE
Confidence 752 2345555553 56677665
No 232
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=90.56 E-value=4.5 Score=41.22 Aligned_cols=150 Identities=9% Similarity=0.094 Sum_probs=82.4
Q ss_pred ceeEEEEeC-CEEEEEecCCeEEEEeCCCCCceeeEcCCCCCCccceeEEEeCCCCCeEEEEeecCCCccEEEEecCCCC
Q 002318 23 VITCMSAGN-DVIVLGTSKGWLIRHDFGAGDSYDIDLSAGRPGEQSIHKVFVDPGGSHCIATIVGSGGAETFYTHAKWSK 101 (936)
Q Consensus 23 ~i~~l~v~~-n~l~l~~~~g~l~ridl~~~~~~~~~l~~~~~~~~~i~~i~lDp~G~hlli~~~~~~~g~~~Y~~~~~~k 101 (936)
.+.++++.. +.+|++..+|.|+++|........+... +...+..+.+||.|. ++++... ++..+.+......
T Consensus 68 ~p~~i~~~~~g~l~v~~~~~~i~~~d~~~~~~~~~~~~----~~~~p~~i~~~~~g~-l~v~~~~--~~~i~~~~~~~~~ 140 (270)
T 1rwi_B 68 QPQGLAVDGAGTVYVTDFNNRVVTLAAGSNNQTVLPFD----GLNYPEGLAVDTQGA-VYVADRG--NNRVVKLAAGSKT 140 (270)
T ss_dssp SCCCEEECTTCCEEEEETTTEEEEECTTCSCCEECCCC----SCSSEEEEEECTTCC-EEEEEGG--GTEEEEECTTCCS
T ss_pred CcceeEECCCCCEEEEcCCCEEEEEeCCCceEeeeecC----CcCCCcceEECCCCC-EEEEECC--CCEEEEEECCCce
Confidence 467888873 4688887788999999944433333222 124678999999997 6665431 4566666443332
Q ss_pred ceeccCCCCceEEEEEecCCCCCCCCcceEEEEcC-CCcEEEEEEecCCcccceeeEEeeeCCCCCceeeEEEEeeccCC
Q 002318 102 PRVLSKLKGLVVNAVAWNRQQITEASTKEIILGTD-TGQLHEMAVDEKDKREKYIKLLFELNELPEAFMGLQMETASLSN 180 (936)
Q Consensus 102 ~k~L~klkg~~I~sVaw~~~~~~~~st~~iLiGt~-~G~i~e~~i~~~~~~~~~~k~v~~l~~~~~~I~gi~~~~~~~~~ 180 (936)
...........+.++++++ .+.+.+++. ++.|+....... .... ..... ...+.+|.+..
T Consensus 141 ~~~~~~~~~~~p~~i~~~~-------~g~l~v~~~~~~~i~~~~~~~~-----~~~~-~~~~~-~~~p~~i~~d~----- 201 (270)
T 1rwi_B 141 QTVLPFTGLNDPDGVAVDN-------SGNVYVTDTDNNRVVKLEAESN-----NQVV-LPFTD-ITAPWGIAVDE----- 201 (270)
T ss_dssp CEECCCCSCCSCCCEEECT-------TCCEEEEEGGGTEEEEECTTTC-----CEEE-CCCSS-CCSEEEEEECT-----
T ss_pred eEeeccccCCCceeEEEeC-------CCCEEEEECCCCEEEEEecCCC-----ceEe-ecccC-CCCceEEEECC-----
Confidence 2222111112567788873 235777764 567776654332 1111 11111 13467877752
Q ss_pred CceEEEEEEC-CCeEEEEec
Q 002318 181 GTRYYVMAVT-PTRLYSFTG 199 (936)
Q Consensus 181 ~~~~~i~ast-~~rly~f~~ 199 (936)
+ +.+.+++. ..+++.|..
T Consensus 202 ~-g~l~v~~~~~~~v~~~~~ 220 (270)
T 1rwi_B 202 A-GTVYVTEHNTNQVVKLLA 220 (270)
T ss_dssp T-CCEEEEETTTSCEEEECT
T ss_pred C-CCEEEEECCCCcEEEEcC
Confidence 1 23333333 567887753
No 233
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=90.52 E-value=1.4 Score=46.89 Aligned_cols=144 Identities=10% Similarity=0.096 Sum_probs=83.2
Q ss_pred eCCEEEEEecCCeEEEEeC-CCCCceeeEcCCCCCCccceeEEEeCCCCCeEEEEeecCCCccEEEEecCCCCceeccCC
Q 002318 30 GNDVIVLGTSKGWLIRHDF-GAGDSYDIDLSAGRPGEQSIHKVFVDPGGSHCIATIVGSGGAETFYTHAKWSKPRVLSKL 108 (936)
Q Consensus 30 ~~n~l~l~~~~g~l~ridl-~~~~~~~~~l~~~~~~~~~i~~i~lDp~G~hlli~~~~~~~g~~~Y~~~~~~k~k~L~kl 108 (936)
.+++++.+..+|+|.+||+ ....+..+.++. ...+..+-++|.|.+++++.. +++..+.+.....+......+
T Consensus 10 ~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~----~~~~~~~~~s~dg~~~~v~~~--~~~~i~~~d~~t~~~~~~~~~ 83 (349)
T 1jmx_B 10 GHEYMIVTNYPNNLHVVDVASDTVYKSCVMPD----KFGPGTAMMAPDNRTAYVLNN--HYGDIYGIDLDTCKNTFHANL 83 (349)
T ss_dssp TCEEEEEEETTTEEEEEETTTTEEEEEEECSS----CCSSCEEEECTTSSEEEEEET--TTTEEEEEETTTTEEEEEEES
T ss_pred CCEEEEEeCCCCeEEEEECCCCcEEEEEecCC----CCCCceeEECCCCCEEEEEeC--CCCcEEEEeCCCCcEEEEEEc
Confidence 4456667778999999999 555455666552 124677889999998888764 256777676654433221111
Q ss_pred C------CceEEEEEecCCCCCCCCcceEEEEcCC------------CcEEEEEEecCCcccceeeEEeeeCCCCCceee
Q 002318 109 K------GLVVNAVAWNRQQITEASTKEIILGTDT------------GQLHEMAVDEKDKREKYIKLLFELNELPEAFMG 170 (936)
Q Consensus 109 k------g~~I~sVaw~~~~~~~~st~~iLiGt~~------------G~i~e~~i~~~~~~~~~~k~v~~l~~~~~~I~g 170 (936)
. +..+.+++|+++ .+.++++..+ +.|+...+..+. ..+.. ..+..+ ..+.+
T Consensus 84 ~~~~~~~~~~~~~~~~spd------g~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~-~~~~~-~~~~~~---~~~~~ 152 (349)
T 1jmx_B 84 SSVPGEVGRSMYSFAISPD------GKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGL-EAKPV-RTFPMP---RQVYL 152 (349)
T ss_dssp CCSTTEEEECSSCEEECTT------SSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGG-GBCCS-EEEECC---SSCCC
T ss_pred ccccccccccccceEECCC------CCEEEEEcccccccccccccCCCeEEEEECCCcc-cccee-eeccCC---Ccccc
Confidence 1 233778899842 2367777654 777777665421 11111 122333 45778
Q ss_pred EEEEeeccCCCceEEEEEECCCeEEEEe
Q 002318 171 LQMETASLSNGTRYYVMAVTPTRLYSFT 198 (936)
Q Consensus 171 i~~~~~~~~~~~~~~i~ast~~rly~f~ 198 (936)
+.|.. +.+ +++++ ..++.|.
T Consensus 153 ~~~s~-----dg~--l~~~~-~~i~~~d 172 (349)
T 1jmx_B 153 MRAAD-----DGS--LYVAG-PDIYKMD 172 (349)
T ss_dssp EEECT-----TSC--EEEES-SSEEEEC
T ss_pred eeECC-----CCc--EEEcc-CcEEEEe
Confidence 87752 223 33344 3477665
No 234
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=90.49 E-value=12 Score=38.26 Aligned_cols=148 Identities=10% Similarity=0.086 Sum_probs=85.8
Q ss_pred CceeEEEEeC-CEEEEEec-CCeEEEEeCCCCCceeeEcCCCCCCccceeEEEeCCCCCeEEEEeecCCCccEEEEecCC
Q 002318 22 GVITCMSAGN-DVIVLGTS-KGWLIRHDFGAGDSYDIDLSAGRPGEQSIHKVFVDPGGSHCIATIVGSGGAETFYTHAKW 99 (936)
Q Consensus 22 ~~i~~l~v~~-n~l~l~~~-~g~l~ridl~~~~~~~~~l~~~~~~~~~i~~i~lDp~G~hlli~~~~~~~g~~~Y~~~~~ 99 (936)
..+.++++.. +.+|++.. ++.|+++|.. .....+.++.. ...+..+.+||.|. +.++.. +++..+.+...
T Consensus 62 ~~~~~i~~~~~g~l~v~~~~~~~v~~~d~~-g~~~~~~~~~~---~~~~~~i~~~~~g~-l~v~~~--~~~~i~~~~~~- 133 (300)
T 2qc5_A 62 AKVMCLIVSSLGDIWFTENGANKIGKLSKK-GGFTEYPLPQP---DSGPYGITEGLNGD-IWFTQL--NGDRIGKLTAD- 133 (300)
T ss_dssp CCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEECSST---TCCEEEEEECSTTC-EEEEET--TTTEEEEECTT-
T ss_pred CcceeEEECCCCCEEEEecCCCeEEEECCC-CCeEEecCCCC---CCCCccceECCCCC-EEEEcc--CCCeEEEECCC-
Confidence 4578888854 56777776 6899999996 44555665522 25689999999996 555543 13556656554
Q ss_pred CCcee--ccCCCCceEEEEEecCCCCCCCCcceEEEEcC-CCcEEEEEEecCCcccceeeEEeeeCCCCCceeeEEEEee
Q 002318 100 SKPRV--LSKLKGLVVNAVAWNRQQITEASTKEIILGTD-TGQLHEMAVDEKDKREKYIKLLFELNELPEAFMGLQMETA 176 (936)
Q Consensus 100 ~k~k~--L~klkg~~I~sVaw~~~~~~~~st~~iLiGt~-~G~i~e~~i~~~~~~~~~~k~v~~l~~~~~~I~gi~~~~~ 176 (936)
.+... +.. .+..+.++++++. +.+.+++. .+.|+.+.... .+.. +.++.....+.+|.+..
T Consensus 134 g~~~~~~~~~-~~~~~~~i~~d~~-------g~l~v~~~~~~~i~~~~~~g------~~~~-~~~~~~~~~~~~i~~d~- 197 (300)
T 2qc5_A 134 GTIYEYDLPN-KGSYPAFITLGSD-------NALWFTENQNNSIGRITNTG------KLEE-YPLPTNAAAPVGITSGN- 197 (300)
T ss_dssp SCEEEEECSS-TTCCEEEEEECTT-------SSEEEEETTTTEEEEECTTC------CEEE-EECSSTTCCEEEEEECT-
T ss_pred CCEEEccCCC-CCCCceeEEECCC-------CCEEEEecCCCeEEEECCCC------cEEE-eeCCCCCCCcceEEECC-
Confidence 33332 221 3457888898832 35777765 56677664421 1222 33432223467777652
Q ss_pred ccCCCceEEEEEEC-CCeEEEEe
Q 002318 177 SLSNGTRYYVMAVT-PTRLYSFT 198 (936)
Q Consensus 177 ~~~~~~~~~i~ast-~~rly~f~ 198 (936)
. +.+.+++. ..+++.|.
T Consensus 198 ---~--g~l~v~~~~~~~i~~~~ 215 (300)
T 2qc5_A 198 ---D--GALWFVEIMGNKIGRIT 215 (300)
T ss_dssp ---T--SSEEEEETTTTEEEEEC
T ss_pred ---C--CCEEEEccCCCEEEEEc
Confidence 1 22333333 45677664
No 235
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=90.46 E-value=9.2 Score=38.63 Aligned_cols=57 Identities=14% Similarity=0.213 Sum_probs=37.3
Q ss_pred HHHHHHHhcccHHHHHHHHhCC----CCchhhHHhhH-HHHHhHChHHHHHHHHccCCCCCC
Q 002318 539 IVVHHYIQQGEAKKALQMLRKP----AVPIDLQYKFA-PDLIMLDAYETVESWMTTNNLNPR 595 (936)
Q Consensus 539 ~ll~~yi~~~~~~~AL~~L~~~----~d~~~li~k~~-~~Ll~~~p~~ti~ll~~~~~ld~~ 595 (936)
.+...|...|+|++|++.+.+. ++....++..+ ......+.+++++.+.+...++|.
T Consensus 113 ~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~ 174 (272)
T 3u4t_A 113 QIGSYFYNKGNFPLAIQYMEKQIRPTTTDPKVFYELGQAYYYNKEYVKADSSFVKVLELKPN 174 (272)
T ss_dssp HHHHHHHHTTCHHHHHHHHGGGCCSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHccCHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcc
Confidence 4666788889999999988753 22245556666 556666777777777543334444
No 236
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=90.46 E-value=1 Score=45.02 Aligned_cols=48 Identities=19% Similarity=0.236 Sum_probs=28.7
Q ss_pred HHchhhHHHHHHhcCC----hhhHHHHHHHHHHHHHhcCCHHHHHHHHHHhc
Q 002318 371 YLDMKEYAAALANCRD----PLQRDQVYLVQAEAAFATKDFHRAASFYAKIN 418 (936)
Q Consensus 371 ll~~~~f~~Al~~~~~----~~~~~~I~~~~~~~L~~~g~y~~Aa~~y~~~~ 418 (936)
++..|+|++|+.+.+. ...-..+....|..++..|+|++|...|.+..
T Consensus 33 ~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~ 84 (243)
T 2q7f_A 33 GSEFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKAL 84 (243)
T ss_dssp ---------CCTTHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHhhCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 6677888888776542 11234677788899999999999999988764
No 237
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=90.27 E-value=0.056 Score=51.76 Aligned_cols=33 Identities=21% Similarity=0.445 Sum_probs=26.7
Q ss_pred cccccccchhhhhcccccccccccCCCCCCCCEEEEcCCChhHHHhHHHHHh
Q 002318 833 DEDCGVCRRKILVAGRDYRMARGYASVGPMAPFYVFPCGHAFHAQCLIAHVT 884 (936)
Q Consensus 833 ~~~C~~C~k~L~~~~~~~~~~~~~~~~~~~~~fvvFpCgH~fH~~CL~~~~~ 884 (936)
...|.+|...+.. |. +.||||.||..|+...+.
T Consensus 78 ~~~C~IC~~~~~~------------------pv-~~~CgH~fC~~Ci~~~~~ 110 (150)
T 1z6u_A 78 SFMCVCCQELVYQ------------------PV-TTECFHNVCKDCLQRSFK 110 (150)
T ss_dssp HTBCTTTSSBCSS------------------EE-ECTTSCEEEHHHHHHHHH
T ss_pred CCEeecCChhhcC------------------CE-EcCCCCchhHHHHHHHHH
Confidence 4579999887655 44 469999999999998875
No 238
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=90.13 E-value=0.024 Score=44.34 Aligned_cols=30 Identities=30% Similarity=0.652 Sum_probs=23.7
Q ss_pred cccccccchhhhhcccccccccccCCCCCCCCEEEEcCCChhHHHhHHH
Q 002318 833 DEDCGVCRRKILVAGRDYRMARGYASVGPMAPFYVFPCGHAFHAQCLIA 881 (936)
Q Consensus 833 ~~~C~~C~k~L~~~~~~~~~~~~~~~~~~~~~fvvFpCgH~fH~~CL~~ 881 (936)
.-.|.+|...+.. + ++.||||.|+..|+..
T Consensus 6 ~~~C~IC~~~~~~------------------p-~~l~CgH~fC~~Ci~~ 35 (56)
T 1bor_A 6 FLRCQQCQAEAKC------------------P-KLLPCLHTLCSGCLEA 35 (56)
T ss_dssp CSSCSSSCSSCBC------------------C-SCSTTSCCSBTTTCSS
T ss_pred CCCceEeCCccCC------------------e-EEcCCCCcccHHHHcc
Confidence 4579999876654 3 4579999999999865
No 239
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C
Probab=90.12 E-value=0.41 Score=46.91 Aligned_cols=40 Identities=13% Similarity=0.124 Sum_probs=32.1
Q ss_pred cEeecccccccccchhhhhcccccccccccCCCCCCCCEEEEcCCChhHHHhHHHHHhh
Q 002318 827 YAVIDRDEDCGVCRRKILVAGRDYRMARGYASVGPMAPFYVFPCGHAFHAQCLIAHVTQ 885 (936)
Q Consensus 827 ~~~i~~~~~C~~C~k~L~~~~~~~~~~~~~~~~~~~~~fvvFpCgH~fH~~CL~~~~~~ 885 (936)
...+...-.|++|+..+.. |++. ||||+|-..|+......
T Consensus 100 ~~~ip~~f~CPI~~elm~D------------------PV~~-~~Ghtfer~~I~~~l~~ 139 (179)
T 2f42_A 100 KREIPDYLCGKISFELMRE------------------PCIT-PSGITYDRKDIEEHLQR 139 (179)
T ss_dssp CCCCCGGGBCTTTCSBCSS------------------EEEC-TTSCEEEHHHHHHHHHH
T ss_pred ccCCcHhhcccCccccCCC------------------CeEC-CCCCEECHHHHHHHHHh
Confidence 3456677889999987766 6555 99999999999998754
No 240
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=90.11 E-value=22 Score=37.91 Aligned_cols=118 Identities=15% Similarity=0.120 Sum_probs=67.3
Q ss_pred CceeEEEEeCCEEEEEe-cCCeEEEEeC-CCCCceeeE---cCCC------CCCccceeEEEeCCCCCeEEEEeecCCCc
Q 002318 22 GVITCMSAGNDVIVLGT-SKGWLIRHDF-GAGDSYDID---LSAG------RPGEQSIHKVFVDPGGSHCIATIVGSGGA 90 (936)
Q Consensus 22 ~~i~~l~v~~n~l~l~~-~~g~l~ridl-~~~~~~~~~---l~~~------~~~~~~i~~i~lDp~G~hlli~~~~~~~g 90 (936)
...+++++.++.|+++- .+|.|..+|+ ....+..+. .+.. +.....++.+.++|.|.+++++.. +++
T Consensus 100 ~~p~~~~~dg~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg~~l~~~~~--~~~ 177 (361)
T 3scy_A 100 ADPCYLTTNGKNIVTANYSGGSITVFPIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITPDGKYLLADDL--GTD 177 (361)
T ss_dssp SCEEEEEECSSEEEEEETTTTEEEEEEBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECTTSSEEEEEET--TTT
T ss_pred CCcEEEEECCCEEEEEECCCCEEEEEEeCCCCcCcccceeEEccCCCCCccccCCCcceEEEECCCCCEEEEEeC--CCC
Confidence 34678888777777776 5789999999 333222211 1100 111234688999999999988764 134
Q ss_pred cEEEEecC--CC----C-c------eeccCCCCceEEEEEecCCCCCCCCcceEEEEc-CCCcEEEEEEec
Q 002318 91 ETFYTHAK--WS----K-P------RVLSKLKGLVVNAVAWNRQQITEASTKEIILGT-DTGQLHEMAVDE 147 (936)
Q Consensus 91 ~~~Y~~~~--~~----k-~------k~L~klkg~~I~sVaw~~~~~~~~st~~iLiGt-~~G~i~e~~i~~ 147 (936)
...-+... .. + . .....-.+....+++|+++ .+.+.++. .+|.|....+..
T Consensus 178 ~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~spd------g~~l~v~~~~~~~v~v~~~~~ 242 (361)
T 3scy_A 178 QIHKFNINPNANADNKEKFLTKGTPEAFKVAPGSGPRHLIFNSD------GKFAYLINEIGGTVIAFRYAD 242 (361)
T ss_dssp EEEEEEECTTCCTTTCCCCEEEEEEEEEECCTTCCEEEEEECTT------SSEEEEEETTTCEEEEEEEET
T ss_pred EEEEEEEcCCCCcccccceeecccccceecCCCCCCeEEEEcCC------CCEEEEEcCCCCeEEEEEecC
Confidence 44333222 21 1 1 1111123567889999843 12454554 468888777763
No 241
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=90.09 E-value=5.2 Score=41.48 Aligned_cols=50 Identities=16% Similarity=0.167 Sum_probs=40.0
Q ss_pred HHHHchhhHHHHHHhcCC----------hhhHHHHHHHHHHHHHhcCCHHHHHHHHHHhc
Q 002318 369 KVYLDMKEYAAALANCRD----------PLQRDQVYLVQAEAAFATKDFHRAASFYAKIN 418 (936)
Q Consensus 369 ~~ll~~~~f~~Al~~~~~----------~~~~~~I~~~~~~~L~~~g~y~~Aa~~y~~~~ 418 (936)
..+...|+|++|+++.+. +.....+....|..++..|+|++|...|.+..
T Consensus 51 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 110 (338)
T 3ro2_A 51 NAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHL 110 (338)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 457778999999988653 22345778889999999999999999988765
No 242
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=90.02 E-value=3.6 Score=42.96 Aligned_cols=128 Identities=10% Similarity=0.043 Sum_probs=70.5
Q ss_pred CCeEEEEeCCCCCceeeEcCCCCCCccceeEEEeCCCCCeEEEEeecCCCccEEEEecC-CCCc----eeccCCCCceEE
Q 002318 40 KGWLIRHDFGAGDSYDIDLSAGRPGEQSIHKVFVDPGGSHCIATIVGSGGAETFYTHAK-WSKP----RVLSKLKGLVVN 114 (936)
Q Consensus 40 ~g~l~ridl~~~~~~~~~l~~~~~~~~~i~~i~lDp~G~hlli~~~~~~~g~~~Y~~~~-~~k~----k~L~klkg~~I~ 114 (936)
.|.|+++|.. ..+..+. . .....+.+.++|.|..+ ++.. .++..+-+... ..++ +.+ ...+-.+.
T Consensus 152 ~~~l~~~~~~-g~~~~~~-~----~~~~~~gi~~s~dg~~l-v~~~--~~~~i~~~~~~~~g~~~~~~~~~-~~~~~~p~ 221 (296)
T 3e5z_A 152 GRWVFRLAPD-GTLSAPI-R----DRVKPNGLAFLPSGNLL-VSDT--GDNATHRYCLNARGETEYQGVHF-TVEPGKTD 221 (296)
T ss_dssp SCEEEEECTT-SCEEEEE-C----CCSSEEEEEECTTSCEE-EEET--TTTEEEEEEECSSSCEEEEEEEE-CCSSSCCC
T ss_pred CcEEEEECCC-CCEEEee-c----CCCCCccEEECCCCCEE-EEeC--CCCeEEEEEECCCCcCcCCCeEe-eCCCCCCC
Confidence 5689999884 3333221 1 12456889999999988 5543 13445444432 1111 222 22233456
Q ss_pred EEEecCCCCCCCCcceEEEEcCCCcEEEEEEecCCcccceeeEEeeeCCCCCceeeEEEEeeccCCCceEEEEEECCCeE
Q 002318 115 AVAWNRQQITEASTKEIILGTDTGQLHEMAVDEKDKREKYIKLLFELNELPEAFMGLQMETASLSNGTRYYVMAVTPTRL 194 (936)
Q Consensus 115 sVaw~~~~~~~~st~~iLiGt~~G~i~e~~i~~~~~~~~~~k~v~~l~~~~~~I~gi~~~~~~~~~~~~~~i~ast~~rl 194 (936)
+++|++ .|.+.+++ .|.|+.+..+. +.+. .+..+. + ++++.+.. .+ +-.++++|...|
T Consensus 222 ~i~~d~-------~G~l~v~~-~~~v~~~~~~g-----~~~~-~~~~~~--~-~~~~~f~~----~d-~~~L~v~t~~~l 279 (296)
T 3e5z_A 222 GLRVDA-------GGLIWASA-GDGVHVLTPDG-----DELG-RVLTPQ--T-TSNLCFGG----PE-GRTLYMTVSTEF 279 (296)
T ss_dssp SEEEBT-------TSCEEEEE-TTEEEEECTTS-----CEEE-EEECSS--C-CCEEEEES----TT-SCEEEEEETTEE
T ss_pred eEEECC-------CCCEEEEc-CCeEEEECCCC-----CEEE-EEECCC--C-ceeEEEEC----CC-CCEEEEEcCCeE
Confidence 677772 35788888 66566554321 1222 245553 3 78887751 12 234555677889
Q ss_pred EEEec
Q 002318 195 YSFTG 199 (936)
Q Consensus 195 y~f~~ 199 (936)
|.+.-
T Consensus 280 ~~~~~ 284 (296)
T 3e5z_A 280 WSIET 284 (296)
T ss_dssp EEEEC
T ss_pred EEEEc
Confidence 98854
No 243
>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A
Probab=90.01 E-value=3.1 Score=50.49 Aligned_cols=111 Identities=13% Similarity=0.076 Sum_probs=68.9
Q ss_pred CceeEEEEeCCEEEEEecCCeEEEEeCCCCCceeeEcCCCCCCccceeEEEeCCCCCeEEEEeecCCCccEEEEecCCCC
Q 002318 22 GVITCMSAGNDVIVLGTSKGWLIRHDFGAGDSYDIDLSAGRPGEQSIHKVFVDPGGSHCIATIVGSGGAETFYTHAKWSK 101 (936)
Q Consensus 22 ~~i~~l~v~~n~l~l~~~~g~l~ridl~~~~~~~~~l~~~~~~~~~i~~i~lDp~G~hlli~~~~~~~g~~~Y~~~~~~k 101 (936)
..|.+++..++.||+|+.+ -|+++|........+.......+...|..|+.|+.|. +.|.|. +| .+.++....+
T Consensus 103 ~~i~~i~~~~g~lWigt~~-Gl~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~-lWigt~---~G-l~~~~~~~~~ 176 (758)
T 3ott_A 103 TDVRTMALQGDTLWLGALN-GLYTYQLQSRKLTSFDTRRNGLPNNTIYSIIRTKDNQ-IYVGTY---NG-LCRYIPSNGK 176 (758)
T ss_dssp SCEEEEEEETTEEEEEETT-EEEEEETTTCCEEEECHHHHCCSCSCEEEEEECTTCC-EEEEET---TE-EEEEETTTTE
T ss_pred ceEEEEEecCCcEEEEcCC-cceeEeCCCCeEEEeccCCCCcCCCeEEEEEEcCCCC-EEEEeC---CC-HhhCccCCCc
Confidence 4588888889999999987 6899998444555442110111235789999999886 566666 56 4444443333
Q ss_pred ceec--c---CCCCceEEEEEecCCCCCCCCcceEEEEcCCCcEEEEEE
Q 002318 102 PRVL--S---KLKGLVVNAVAWNRQQITEASTKEIILGTDTGQLHEMAV 145 (936)
Q Consensus 102 ~k~L--~---klkg~~I~sVaw~~~~~~~~st~~iLiGt~~G~i~e~~i 145 (936)
.+.+ . .+.+..|.++..++. .+.+.|||..| |+.+..
T Consensus 177 ~~~~~~~~~~~~~~~~i~~i~~d~~------~~~lWigt~~G-l~~~~~ 218 (758)
T 3ott_A 177 FEGIPLPVHSSQSNLFVNSLLEDTT------RQCVWIGTEGY-LFQYFP 218 (758)
T ss_dssp EEEECCCCCTTCSSCCEEEEEEETT------TTEEEEEEEEE-EEEEET
T ss_pred eEEecCCCccccccceeEEEEEECC------CCEEEEEECCC-CeEEcC
Confidence 3222 1 112345888888731 23689999766 665543
No 244
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=89.68 E-value=3.6 Score=47.66 Aligned_cols=139 Identities=6% Similarity=0.017 Sum_probs=81.0
Q ss_pred cCCeEEEEeCCCCCce-e--eEcCCCCCCccceeEEEeCCC------CCeEEEEeecCCCccEEEEecCCCCce------
Q 002318 39 SKGWLIRHDFGAGDSY-D--IDLSAGRPGEQSIHKVFVDPG------GSHCIATIVGSGGAETFYTHAKWSKPR------ 103 (936)
Q Consensus 39 ~~g~l~ridl~~~~~~-~--~~l~~~~~~~~~i~~i~lDp~------G~hlli~~~~~~~g~~~Y~~~~~~k~k------ 103 (936)
.+|+|-.||+...+.. . ..+.. ....|..+-..|. |..|+.++. +|.+..++....+..
T Consensus 181 ~D~tI~iWd~~~~~~~~~~~~~l~~---~~~~V~~v~wsp~~~~~~~~~~LAs~s~---DgtvrlWd~~~~~~~~~~~~~ 254 (524)
T 2j04_B 181 HSSCIQIFKMNTSTLHCVKVQTIVH---SFGEVWDLKWHEGCHAPHLVGCLSFVSQ---EGTINFLEIIDNATDVHVFKM 254 (524)
T ss_dssp -CEEEEEEEEETTTCCEEEEEEEEE---CCCSEEEEEECSSCCCSSSSCEEEEEET---TSCEEEEECCCCSSSSSEEEC
T ss_pred CCceEEEEEccCCCCCceEEEEEEe---cCCcEEEEEECCCCCCCCCCceEEEEec---CCeEEEEEcCCCcccccccee
Confidence 5577888898322221 1 11111 1256888888886 455665665 888888776443211
Q ss_pred ---eccCCCC--ceEEEEEecCCCCCCCCcceEEEEcCCCcEEEEEEecCCcccceeeEEeeeCCCCCceeeEEEEeecc
Q 002318 104 ---VLSKLKG--LVVNAVAWNRQQITEASTKEIILGTDTGQLHEMAVDEKDKREKYIKLLFELNELPEAFMGLQMETASL 178 (936)
Q Consensus 104 ---~L~klkg--~~I~sVaw~~~~~~~~st~~iLiGt~~G~i~e~~i~~~~~~~~~~k~v~~l~~~~~~I~gi~~~~~~~ 178 (936)
+...++| ..|+||+|+++ +.|+.|+.+|.|....+..+. .....+.... ++|++|.+.. +
T Consensus 255 ~~~p~~~l~~h~~~v~sv~~s~~-------~~lasgs~DgtV~lWD~~~~~----~~~~~~~~H~--~~V~sv~~~~-s- 319 (524)
T 2j04_B 255 CEKPSLTLSLADSLITTFDFLSP-------TTVVCGFKNGFVAEFDLTDPE----VPSFYDQVHD--SYILSVSTAY-S- 319 (524)
T ss_dssp CCSCSEEECCTTTCEEEEEESSS-------SEEEEEETTSEEEEEETTBCS----SCSEEEECSS--SCEEEEEEEC-C-
T ss_pred ecCceEEEEcCCCCEEEEEecCC-------CeEEEEeCCCEEEEEECCCCC----CceEEeeccc--ccEEEEEEEc-C-
Confidence 1112233 57999999832 269999999999887775321 1112223333 6799995432 1
Q ss_pred CCC-ceEEEEEECCCeEEEEec
Q 002318 179 SNG-TRYYVMAVTPTRLYSFTG 199 (936)
Q Consensus 179 ~~~-~~~~i~ast~~rly~f~~ 199 (936)
.. .++++-++....+.-|.-
T Consensus 320 -~~g~~~laS~S~D~tvklWD~ 340 (524)
T 2j04_B 320 -DFEDTVVSTVAVDGYFYIFNP 340 (524)
T ss_dssp -TTSCCEEEEEETTSEEEEECG
T ss_pred -CCCCeEEEEeccCCeEEEEEC
Confidence 22 256777777777777753
No 245
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=89.66 E-value=1.9 Score=43.16 Aligned_cols=49 Identities=14% Similarity=0.023 Sum_probs=38.5
Q ss_pred HHHchhhHHHHHHhcCC----hhhHHHHHHHHHHHHHhcCCHHHHHHHHHHhc
Q 002318 370 VYLDMKEYAAALANCRD----PLQRDQVYLVQAEAAFATKDFHRAASFYAKIN 418 (936)
Q Consensus 370 ~ll~~~~f~~Al~~~~~----~~~~~~I~~~~~~~L~~~g~y~~Aa~~y~~~~ 418 (936)
.+++.|+|++|+...+. ...-.......|.-++..|++++|...|.+..
T Consensus 14 ~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al 66 (217)
T 2pl2_A 14 QLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLV 66 (217)
T ss_dssp HHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 47888999999988652 12334667788899999999999999998865
No 246
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=89.62 E-value=4.4 Score=39.42 Aligned_cols=62 Identities=16% Similarity=0.223 Sum_probs=48.2
Q ss_pred hhhHHHHHHchhhHHHHHHhcCChhhHHHHHHHHHHHHHhcCCHHHHHHHHHHhcCCCChHHHHHH
Q 002318 364 GRDMWKVYLDMKEYAAALANCRDPLQRDQVYLVQAEAAFATKDFHRAASFYAKINYILSFEEITLK 429 (936)
Q Consensus 364 ~~~~W~~ll~~~~f~~Al~~~~~~~~~~~I~~~~~~~L~~~g~y~~Aa~~y~~~~~~~~~E~v~lk 429 (936)
.+..-.+-++.|+++.|+++|+.- .....-.+-|+.-+.+|+++-|.++|.++. .|+.+-+-
T Consensus 8 ~~~rF~LAL~lg~l~~A~e~a~~l-~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~---D~~~L~~L 69 (177)
T 3mkq_B 8 PHIRFDLALEYGNLDAALDEAKKL-NDSITWERLIQEALAQGNASLAEMIYQTQH---SFDKLSFL 69 (177)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHH-CCHHHHHHHHHHHHHTTCHHHHHHHHHHTT---CHHHHHHH
T ss_pred hHHHHHHHHhcCCHHHHHHHHHHh-CCHHHHHHHHHHHHHcCChHHHHHHHHHhC---CHHHHHHH
Confidence 345566789999999999998631 234567788999999999999999999986 67655443
No 247
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=89.62 E-value=3.8 Score=42.69 Aligned_cols=203 Identities=9% Similarity=-0.011 Sum_probs=104.4
Q ss_pred HHHHHchhhHHHHHHhcCCh----hhHHHHHHHHHHHHHhcCCHHHHHHHHHHhc--CCC---ChHHHHHHhcCcChHHH
Q 002318 368 WKVYLDMKEYAAALANCRDP----LQRDQVYLVQAEAAFATKDFHRAASFYAKIN--YIL---SFEEITLKFISVSEQDA 438 (936)
Q Consensus 368 W~~ll~~~~f~~Al~~~~~~----~~~~~I~~~~~~~L~~~g~y~~Aa~~y~~~~--~~~---~~E~v~lkFl~~~~~~~ 438 (936)
...++..|+|++|+.+.+.. .....+....|..++..|+|++|...|.+.. ... .+-.....+...++.+.
T Consensus 28 a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~ 107 (327)
T 3cv0_A 28 GLSMLKLANLAEAALAFEAVCQAAPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHNANA 107 (327)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCCHHHHHHHHHHHHHcCCHHH
Confidence 34588889999999887531 1234566677888999999999999888764 111 12223334445566555
Q ss_pred HHHHHHHHhhcccCchhHHHHH--------HHHHH-HH-HHHHHHhhhhcccchhhccchHHHHHHHHHHHHHHhccccc
Q 002318 439 LRTFLLRKLDNLAKDDKCQITM--------ISTWA-TE-LYLDKINRLLLEDDTALENRSSEYQSIMREFRAFLSDCKDV 508 (936)
Q Consensus 439 L~~YL~~~l~~l~~~~~~~~~l--------L~~Wl-~e-ly~~~l~~~~~e~~~~~~~~~~~~~~~~~~l~~fl~~~~~~ 508 (936)
-..++..-+..-+........+ ...|+ .. +|. ..+ .+.+...-+++.+.....
T Consensus 108 A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~---------------~~~~A~~~~~~~~~~~~~- 170 (327)
T 3cv0_A 108 ALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFA-APN---------------EYRECRTLLHAALEMNPN- 170 (327)
T ss_dssp HHHHHHHHHHTSTTTTTC--------------------CCTT-SHH---------------HHHHHHHHHHHHHHHSTT-
T ss_pred HHHHHHHHHHhCCccHHHHHHHhHHHHHHHHHHHHHHhHHHH-Hcc---------------cHHHHHHHHHHHHhhCCC-
Confidence 5555554443322221111100 00111 11 121 001 111112222222222111
Q ss_pred CCHHH---HHHHHHHcCChhHHHHHHHhh--------hhHHHHHHHHHhcccHHHHHHHHhCC----CCchhhHHhhHHH
Q 002318 509 LDEAT---TMKLLESYGRVEELVFFASLK--------EQHEIVVHHYIQQGEAKKALQMLRKP----AVPIDLQYKFAPD 573 (936)
Q Consensus 509 ld~~t---v~~ll~~~g~~e~~l~~a~~~--------~dy~~ll~~yi~~~~~~~AL~~L~~~----~d~~~li~k~~~~ 573 (936)
+... ...++...|+.++++.+.+.. .-+..+...|...|++++|++.+.+. ++.....+..+..
T Consensus 171 -~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~ 249 (327)
T 3cv0_A 171 -DAQLHASLGVLYNLSNNYDSAAANLRRAVELRPDDAQLWNKLGATLANGNRPQEALDAYNRALDINPGYVRVMYNMAVS 249 (327)
T ss_dssp -CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred -CHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHH
Confidence 1111 223455667777776666542 12445667888899999999887652 3323455555555
Q ss_pred HHh-HChHHHHHHHHc
Q 002318 574 LIM-LDAYETVESWMT 588 (936)
Q Consensus 574 Ll~-~~p~~ti~ll~~ 588 (936)
++. .++++++..+.+
T Consensus 250 ~~~~g~~~~A~~~~~~ 265 (327)
T 3cv0_A 250 YSNMSQYDLAAKQLVR 265 (327)
T ss_dssp HHHTTCHHHHHHHHHH
T ss_pred HHHhccHHHHHHHHHH
Confidence 543 467777777744
No 248
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=89.60 E-value=0.14 Score=47.53 Aligned_cols=22 Identities=32% Similarity=0.649 Sum_probs=18.5
Q ss_pred CEEEEcCCChhHHHhHHHHHhh
Q 002318 864 PFYVFPCGHAFHAQCLIAHVTQ 885 (936)
Q Consensus 864 ~fvvFpCgH~fH~~CL~~~~~~ 885 (936)
..+..+|||.||..|+...+..
T Consensus 91 ~~~~~~CgH~fc~~Ci~~~~~~ 112 (133)
T 4ap4_A 91 LIVSTECGHVFCSQCLRDSLKN 112 (133)
T ss_dssp CEEEETTSBEEEHHHHHHHHHH
T ss_pred ceEeCCCCChhhHHHHHHHHHc
Confidence 4578899999999999987654
No 249
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=89.56 E-value=20 Score=36.66 Aligned_cols=150 Identities=15% Similarity=0.080 Sum_probs=83.5
Q ss_pred ceeEEEEeC-CEEEEEe-cCCeEEEEeCCCCCceeeEcCCCCCCccceeEEEeCCCCCeEEEEeecCCCccEEEEecCCC
Q 002318 23 VITCMSAGN-DVIVLGT-SKGWLIRHDFGAGDSYDIDLSAGRPGEQSIHKVFVDPGGSHCIATIVGSGGAETFYTHAKWS 100 (936)
Q Consensus 23 ~i~~l~v~~-n~l~l~~-~~g~l~ridl~~~~~~~~~l~~~~~~~~~i~~i~lDp~G~hlli~~~~~~~g~~~Y~~~~~~ 100 (936)
...++++.. +.+|++. .++.|+++|.....+..+..+. ....+..|.+||.|. ++++.. .++..+.++....
T Consensus 122 ~~~~i~~~~~g~l~v~~~~~~~i~~~~~~g~~~~~~~~~~---~~~~p~~i~~~~~g~-l~v~~~--~~~~i~~~~~~g~ 195 (286)
T 1q7f_A 122 HPRGVTVDNKGRIIVVECKVMRVIIFDQNGNVLHKFGCSK---HLEFPNGVVVNDKQE-IFISDN--RAHCVKVFNYEGQ 195 (286)
T ss_dssp CEEEEEECTTSCEEEEETTTTEEEEECTTSCEEEEEECTT---TCSSEEEEEECSSSE-EEEEEG--GGTEEEEEETTCC
T ss_pred CceEEEEeCCCCEEEEECCCCEEEEEcCCCCEEEEeCCCC---ccCCcEEEEECCCCC-EEEEEC--CCCEEEEEcCCCC
Confidence 467888863 3466664 5789999998544444443321 124578999999997 555532 1456666665433
Q ss_pred CceeccCCCC--ceEEEEEecCCCCCCCCcceEEEEcCC-C-cEEEEEEecCCcccceeeEEeeeCCCCCceeeEEEEee
Q 002318 101 KPRVLSKLKG--LVVNAVAWNRQQITEASTKEIILGTDT-G-QLHEMAVDEKDKREKYIKLLFELNELPEAFMGLQMETA 176 (936)
Q Consensus 101 k~k~L~klkg--~~I~sVaw~~~~~~~~st~~iLiGt~~-G-~i~e~~i~~~~~~~~~~k~v~~l~~~~~~I~gi~~~~~ 176 (936)
..+.+.. .| ..+.++++++ .+.+++++.. + .|.....+. +.++.+ ........+.+|.+..
T Consensus 196 ~~~~~~~-~g~~~~p~~i~~d~-------~G~l~v~~~~~~~~i~~~~~~g-----~~~~~~-~~~~~~~~~~~i~~~~- 260 (286)
T 1q7f_A 196 YLRQIGG-EGITNYPIGVGINS-------NGEILIADNHNNFNLTIFTQDG-----QLISAL-ESKVKHAQCFDVALMD- 260 (286)
T ss_dssp EEEEESC-TTTSCSEEEEEECT-------TCCEEEEECSSSCEEEEECTTS-----CEEEEE-EESSCCSCEEEEEEET-
T ss_pred EEEEEcc-CCccCCCcEEEECC-------CCCEEEEeCCCCEEEEEECCCC-----CEEEEE-cccCCCCcceeEEECC-
Confidence 3333321 22 3678899983 2468887753 3 666553221 223332 3322112356787762
Q ss_pred ccCCCceEEEEEECCCeEEEEe
Q 002318 177 SLSNGTRYYVMAVTPTRLYSFT 198 (936)
Q Consensus 177 ~~~~~~~~~i~ast~~rly~f~ 198 (936)
+ +.+++++...+++-|.
T Consensus 261 ----~-g~l~vs~~~~~v~v~~ 277 (286)
T 1q7f_A 261 ----D-GSVVLASKDYRLYIYR 277 (286)
T ss_dssp ----T-TEEEEEETTTEEEEEE
T ss_pred ----C-CcEEEECCCCeEEEEE
Confidence 1 2345555666776663
No 250
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=89.54 E-value=3.5 Score=44.31 Aligned_cols=50 Identities=10% Similarity=-0.057 Sum_probs=39.8
Q ss_pred HHHHchhhHHHHHHhcCCh----hhHHHHHHHHHHHHHhcCCHHHHHHHHHHhc
Q 002318 369 KVYLDMKEYAAALANCRDP----LQRDQVYLVQAEAAFATKDFHRAASFYAKIN 418 (936)
Q Consensus 369 ~~ll~~~~f~~Al~~~~~~----~~~~~I~~~~~~~L~~~g~y~~Aa~~y~~~~ 418 (936)
..+...|+|++|++..+.. .....+....|.-+...|+|++|...|.+..
T Consensus 107 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 160 (365)
T 4eqf_A 107 ITQAENENEQAAIVALQRCLELQPNNLKALMALAVSYTNTSHQQDACEALKNWI 160 (365)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHccccHHHHHHHHHHHH
Confidence 3577889999999987632 1234677888999999999999999998875
No 251
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=89.42 E-value=17 Score=38.49 Aligned_cols=154 Identities=8% Similarity=0.064 Sum_probs=83.8
Q ss_pred ceeEEEEeC--CEEEEEecCCeEEEEeCC-CCCcee---eEcCCCCCCccceeEEEeCCCCCeEEEEeecCCCccEEEEe
Q 002318 23 VITCMSAGN--DVIVLGTSKGWLIRHDFG-AGDSYD---IDLSAGRPGEQSIHKVFVDPGGSHCIATIVGSGGAETFYTH 96 (936)
Q Consensus 23 ~i~~l~v~~--n~l~l~~~~g~l~ridl~-~~~~~~---~~l~~~~~~~~~i~~i~lDp~G~hlli~~~~~~~g~~~Y~~ 96 (936)
.+.+++++. ++++....++.|..+|+. ...+.. +..+. ...+..+-++|.|.+++++... ++....+.
T Consensus 142 ~~~~~~~spdg~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~----g~~p~~~~~spdg~~l~v~~~~--~~~v~v~~ 215 (347)
T 3hfq_A 142 HIHYTDLTPDNRLAVIDLGSDKVYVYNVSDAGQLSEQSVLTMEA----GFGPRHLVFSPDGQYAFLAGEL--SSQIASLK 215 (347)
T ss_dssp CEEEEEECTTSCEEEEETTTTEEEEEEECTTSCEEEEEEEECCT----TCCEEEEEECTTSSEEEEEETT--TTEEEEEE
T ss_pred CceEEEECCCCcEEEEeCCCCEEEEEEECCCCcEEEeeeEEcCC----CCCCceEEECCCCCEEEEEeCC--CCEEEEEE
Confidence 367788864 444444567889999994 333332 22331 2356789999999998887651 34443333
Q ss_pred cC--CCCcee---ccCCCC-----ceEEEEEecCCCCCCCCcceEEEE-cCCCcEEEEEEecCCcccceeeEEeeeCCCC
Q 002318 97 AK--WSKPRV---LSKLKG-----LVVNAVAWNRQQITEASTKEIILG-TDTGQLHEMAVDEKDKREKYIKLLFELNELP 165 (936)
Q Consensus 97 ~~--~~k~k~---L~klkg-----~~I~sVaw~~~~~~~~st~~iLiG-t~~G~i~e~~i~~~~~~~~~~k~v~~l~~~~ 165 (936)
.. ..+.+. +....+ ..+.+++|+++ .+.+.+. ..++.|....++.. + .++.+..++...
T Consensus 216 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~spd------G~~l~v~~~~~~~v~v~~~~~~-g---~~~~~~~~~~~~ 285 (347)
T 3hfq_A 216 YDTQTGAFTQLGIVKTIPADYTAHNGAAAIRLSHD------GHFLYVSNRGYNTLAVFAVTAD-G---HLTLIQQISTEG 285 (347)
T ss_dssp EETTTTEEEEEEEEESSCTTCCSCCEEEEEEECTT------SCEEEEEEETTTEEEEEEECGG-G---CEEEEEEEECSS
T ss_pred ecCCCCceEEeeeeeecCCCCCCCCcceeEEECCC------CCEEEEEeCCCCEEEEEEECCC-C---cEEEeEEEecCC
Confidence 22 122222 211111 45889999843 1234343 44687887777542 1 234443443211
Q ss_pred CceeeEEEEeeccCCCceEEEEEECC-CeEEEE
Q 002318 166 EAFMGLQMETASLSNGTRYYVMAVTP-TRLYSF 197 (936)
Q Consensus 166 ~~I~gi~~~~~~~~~~~~~~i~ast~-~rly~f 197 (936)
..+.++.|. .+.++++++... ..+.-|
T Consensus 286 ~~~~~~~~s-----pdg~~l~v~~~~~~~v~v~ 313 (347)
T 3hfq_A 286 DFPRDFDLD-----PTEAFVVVVNQNTDNATLY 313 (347)
T ss_dssp SCCCEEEEC-----TTSSEEEEEETTTTEEEEE
T ss_pred CCcCeEEEC-----CCCCEEEEEEcCCCcEEEE
Confidence 346788885 233566666653 445444
No 252
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=89.16 E-value=0.09 Score=44.41 Aligned_cols=38 Identities=24% Similarity=0.598 Sum_probs=28.2
Q ss_pred ccccccccchhhhhcccccccccccCCCCCCCCEEEEcCC-----ChhHHHhHHHHHhhc
Q 002318 832 RDEDCGVCRRKILVAGRDYRMARGYASVGPMAPFYVFPCG-----HAFHAQCLIAHVTQC 886 (936)
Q Consensus 832 ~~~~C~~C~k~L~~~~~~~~~~~~~~~~~~~~~fvvFpCg-----H~fH~~CL~~~~~~~ 886 (936)
....|.+|...... . .++ +-||+ |.||.+||...+...
T Consensus 14 ~~~~C~IC~~~~~~-----~-----------~~l-~~pC~C~Gs~h~fH~~Cl~~Wl~~~ 56 (80)
T 2d8s_A 14 SQDICRICHCEGDD-----E-----------SPL-ITPCHCTGSLHFVHQACLQQWIKSS 56 (80)
T ss_dssp TSCCCSSSCCCCCS-----S-----------SCE-ECSSSCCSSSCCEETTHHHHHHHHH
T ss_pred CCCCCeEcCccccC-----C-----------Cee-EeccccCCcCCeeCHHHHHHHHhhC
Confidence 45689999865433 1 154 57996 999999999988654
No 253
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=89.02 E-value=15 Score=36.52 Aligned_cols=49 Identities=18% Similarity=0.171 Sum_probs=40.1
Q ss_pred HHHchhhHHHHHHhcCC-----hh--hHHHHHHHHHHHHHhcCCHHHHHHHHHHhc
Q 002318 370 VYLDMKEYAAALANCRD-----PL--QRDQVYLVQAEAAFATKDFHRAASFYAKIN 418 (936)
Q Consensus 370 ~ll~~~~f~~Al~~~~~-----~~--~~~~I~~~~~~~L~~~g~y~~Aa~~y~~~~ 418 (936)
.+++.|+|++|+...+. |. .........|.-++..|+|++|+..|.+..
T Consensus 13 ~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l 68 (225)
T 2yhc_A 13 QKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFI 68 (225)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 48899999999988652 32 235678888999999999999999998864
No 254
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=88.95 E-value=3.8 Score=39.48 Aligned_cols=48 Identities=13% Similarity=0.153 Sum_probs=36.1
Q ss_pred HHchhhHHHHHH---hcC-ChhhHHHHHHHHHHHHHhcCCHHHHHHHHHHhc
Q 002318 371 YLDMKEYAAALA---NCR-DPLQRDQVYLVQAEAAFATKDFHRAASFYAKIN 418 (936)
Q Consensus 371 ll~~~~f~~Al~---~~~-~~~~~~~I~~~~~~~L~~~g~y~~Aa~~y~~~~ 418 (936)
++..|+|++|.+ ... ++.....+....|..++..|+|++|...|.+..
T Consensus 2 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 53 (203)
T 3gw4_A 2 AFEAHDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQ 53 (203)
T ss_dssp -----CHHHHHHHHHHHHTSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred ccccccHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHH
Confidence 467899999999 543 455677888899999999999999999988765
No 255
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=88.95 E-value=4.6 Score=50.95 Aligned_cols=148 Identities=9% Similarity=0.047 Sum_probs=95.2
Q ss_pred ceeEEEEe-CC--EEEEEecCCeEEEEeCCCCCceeeEcCCCCCCccceeEEEeCCCCCeEEEEeecCCCccEE-EEecC
Q 002318 23 VITCMSAG-ND--VIVLGTSKGWLIRHDFGAGDSYDIDLSAGRPGEQSIHKVFVDPGGSHCIATIVGSGGAETF-YTHAK 98 (936)
Q Consensus 23 ~i~~l~v~-~n--~l~l~~~~g~l~ridl~~~~~~~~~l~~~~~~~~~i~~i~lDp~G~hlli~~~~~~~g~~~-Y~~~~ 98 (936)
.+.+++.+ .+ .++++. .|.|+.+|+....... +.. .....+..+... .|.+++.+++ ++..+ -+...
T Consensus 297 ~v~~~~~S~pdG~~la~~~-~~~i~~~~~~~~~~~~--~~~--~~~~~~~~~~~s-dg~~l~~~s~---~~~l~~~~d~~ 367 (1045)
T 1k32_A 297 SKFAEDFSPLDGDLIAFVS-RGQAFIQDVSGTYVLK--VPE--PLRIRYVRRGGD-TKVAFIHGTR---EGDFLGIYDYR 367 (1045)
T ss_dssp GGGEEEEEECGGGCEEEEE-TTEEEEECTTSSBEEE--CSC--CSCEEEEEECSS-SEEEEEEEET---TEEEEEEEETT
T ss_pred ccceeeecCCCCCEEEEEE-cCEEEEEcCCCCceEE--ccC--CCcceEEeeeEc-CCCeEEEEEC---CCceEEEEECC
Confidence 47888888 43 555555 8899999993333322 221 112267788888 8998888876 56665 55666
Q ss_pred CCCceeccCCCCceEEEEEecCCCCCCCCcceEEEEcCCCcEEEEEEecCCcccceeeEEeeeCCCCCceeeEEEEeecc
Q 002318 99 WSKPRVLSKLKGLVVNAVAWNRQQITEASTKEIILGTDTGQLHEMAVDEKDKREKYIKLLFELNELPEAFMGLQMETASL 178 (936)
Q Consensus 99 ~~k~k~L~klkg~~I~sVaw~~~~~~~~st~~iLiGt~~G~i~e~~i~~~~~~~~~~k~v~~l~~~~~~I~gi~~~~~~~ 178 (936)
..+.+.+. -.+..+.+++|+++ .+.++.++.++.|+...+..+ ..+.+..-. .++|.++.|..
T Consensus 368 ~~~~~~l~-~~~~~~~~~~~SpD------G~~la~~~~~~~v~~~d~~tg-----~~~~~~~~~--~~~v~~~~~Sp--- 430 (1045)
T 1k32_A 368 TGKAEKFE-ENLGNVFAMGVDRN------GKFAVVANDRFEIMTVDLETG-----KPTVIERSR--EAMITDFTISD--- 430 (1045)
T ss_dssp TCCEEECC-CCCCSEEEEEECTT------SSEEEEEETTSEEEEEETTTC-----CEEEEEECS--SSCCCCEEECT---
T ss_pred CCCceEec-CCccceeeeEECCC------CCEEEEECCCCeEEEEECCCC-----ceEEeccCC--CCCccceEECC---
Confidence 66666666 34468999999943 346778888898987766543 134443333 36688998862
Q ss_pred CCCceEEEEEECC----------CeEEEEe
Q 002318 179 SNGTRYYVMAVTP----------TRLYSFT 198 (936)
Q Consensus 179 ~~~~~~~i~ast~----------~rly~f~ 198 (936)
+.+++++++.. ..++.|.
T Consensus 431 --DG~~la~~~~~~~~~~~~~~~~~i~l~d 458 (1045)
T 1k32_A 431 --NSRFIAYGFPLKHGETDGYVMQAIHVYD 458 (1045)
T ss_dssp --TSCEEEEEEEECSSTTCSCCEEEEEEEE
T ss_pred --CCCeEEEEecCccccccCCCCCeEEEEE
Confidence 33667666542 3677674
No 256
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=88.90 E-value=0.086 Score=47.96 Aligned_cols=34 Identities=21% Similarity=0.571 Sum_probs=27.1
Q ss_pred cccccccchhhhhcccccccccccCCCCCCCCEEEEcCCChhHHHhHHHHHhh
Q 002318 833 DEDCGVCRRKILVAGRDYRMARGYASVGPMAPFYVFPCGHAFHAQCLIAHVTQ 885 (936)
Q Consensus 833 ~~~C~~C~k~L~~~~~~~~~~~~~~~~~~~~~fvvFpCgH~fH~~CL~~~~~~ 885 (936)
...|.+|...+.. |.. .+|||.||..|+...+..
T Consensus 23 ~~~C~IC~~~~~~------------------p~~-~~CgH~fC~~Ci~~~~~~ 56 (116)
T 1rmd_A 23 SISCQICEHILAD------------------PVE-TSCKHLFCRICILRCLKV 56 (116)
T ss_dssp HTBCTTTCSBCSS------------------EEE-CTTSCEEEHHHHHHHHHH
T ss_pred CCCCCCCCcHhcC------------------cEE-cCCCCcccHHHHHHHHhH
Confidence 4679999877654 444 699999999999988754
No 257
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=88.89 E-value=6.3 Score=41.42 Aligned_cols=51 Identities=14% Similarity=0.170 Sum_probs=40.2
Q ss_pred HHHHHHchhhHHHHHHhcCCh-hhHHHHHHHHHHHHHhcCCHHHHHHHHHHh
Q 002318 367 MWKVYLDMKEYAAALANCRDP-LQRDQVYLVQAEAAFATKDFHRAASFYAKI 417 (936)
Q Consensus 367 ~W~~ll~~~~f~~Al~~~~~~-~~~~~I~~~~~~~L~~~g~y~~Aa~~y~~~ 417 (936)
.-+.|+..|+|++|+...+.. ..........+..+...|++++|.+.+.+.
T Consensus 40 l~r~yi~~g~~~~al~~~~~~~~~~~~a~~~la~~~~~~~~~~~A~~~l~~l 91 (291)
T 3mkr_A 40 LYRAYLAQRKYGVVLDEIKPSSAPELQAVRMFAEYLASHSRRDAIVAELDRE 91 (291)
T ss_dssp HHHHHHHTTCHHHHHHHSCTTSCHHHHHHHHHHHHHHCSTTHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHhcccCChhHHHHHHHHHHHcCCCcHHHHHHHHHHH
Confidence 346789999999999887642 123456667889999999999999998875
No 258
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=88.75 E-value=11 Score=39.16 Aligned_cols=240 Identities=11% Similarity=0.044 Sum_probs=116.6
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHhc--CCCC---hHHHHHHhcCcChHHHHHHHHHHHhhcccCchhHHHHHHHHHH
Q 002318 391 DQVYLVQAEAAFATKDFHRAASFYAKIN--YILS---FEEITLKFISVSEQDALRTFLLRKLDNLAKDDKCQITMISTWA 465 (936)
Q Consensus 391 ~~I~~~~~~~L~~~g~y~~Aa~~y~~~~--~~~~---~E~v~lkFl~~~~~~~L~~YL~~~l~~l~~~~~~~~~lL~~Wl 465 (936)
.......|..++..|+|++|...|.+.. +... |-....-+...++.+.-..++..-+..-+.+... ...+
T Consensus 21 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~-----~~~l 95 (327)
T 3cv0_A 21 HENPMEEGLSMLKLANLAEAALAFEAVCQAAPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAV-----HAAL 95 (327)
T ss_dssp SSCHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH-----HHHH
T ss_pred hHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCCHHH-----HHHH
Confidence 3456677899999999999999998864 1111 1222233344555555555555444432222111 1122
Q ss_pred HHHHHHHHhhhhcccchhhccchHHHHHHHHHHHHHHhcccccCCHHHH---------------HH-HHHHcCChhHHHH
Q 002318 466 TELYLDKINRLLLEDDTALENRSSEYQSIMREFRAFLSDCKDVLDEATT---------------MK-LLESYGRVEELVF 529 (936)
Q Consensus 466 ~ely~~~l~~~~~e~~~~~~~~~~~~~~~~~~l~~fl~~~~~~ld~~tv---------------~~-ll~~~g~~e~~l~ 529 (936)
..+|... . .+.+....+++.+.........-.. -. ++...|+.++++.
T Consensus 96 a~~~~~~-~---------------~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~ 159 (327)
T 3cv0_A 96 AVSHTNE-H---------------NANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRT 159 (327)
T ss_dssp HHHHHHT-T---------------CHHHHHHHHHHHHHTSTTTTTC--------------------CCTTSHHHHHHHHH
T ss_pred HHHHHHc-C---------------CHHHHHHHHHHHHHhCCccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHH
Confidence 2233211 1 1111222333333321111000000 00 1333455555555
Q ss_pred HHHhh--------hhHHHHHHHHHhcccHHHHHHHHhCC----CCchhhHHhhHHHHHh-HChHHHHHHHHccCCCCCCc
Q 002318 530 FASLK--------EQHEIVVHHYIQQGEAKKALQMLRKP----AVPIDLQYKFAPDLIM-LDAYETVESWMTTNNLNPRK 596 (936)
Q Consensus 530 ~a~~~--------~dy~~ll~~yi~~~~~~~AL~~L~~~----~d~~~li~k~~~~Ll~-~~p~~ti~ll~~~~~ld~~~ 596 (936)
+.+.. .-+..+...|...|++++|++.+.+. ++....+...+..+.. ..+++++..+.+.-.++|..
T Consensus 160 ~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~ 239 (327)
T 3cv0_A 160 LLHAALEMNPNDAQLHASLGVLYNLSNNYDSAAANLRRAVELRPDDAQLWNKLGATLANGNRPQEALDAYNRALDINPGY 239 (327)
T ss_dssp HHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHhhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC
Confidence 44432 22445667888999999999988653 2323555555655553 46777777775432233332
Q ss_pred chh--Hhh-hcCCCCCCCCChHHHHHHHHHHHhhcCCC-----------CHhHHHHHHHHhhcCCChHHHHHH
Q 002318 597 LIP--AMM-RYSSEPHAKNETHEVIKYLEFCVHRLHNE-----------DPGVHNLLLSLYAKQEDDSALLRF 655 (936)
Q Consensus 597 li~--~L~-~~~~~~~~~~~~~~~~~YLe~li~~~~~~-----------~~~~hn~ll~Ly~~~~~~~~Ll~f 655 (936)
... .+. -+.. ......++.+++..+...+.. ....+..+...|...++.++...+
T Consensus 240 ~~~~~~l~~~~~~----~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 308 (327)
T 3cv0_A 240 VRVMYNMAVSYSN----MSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELT 308 (327)
T ss_dssp HHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHH----hccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHH
Confidence 110 010 0100 023567888888887665432 345566666666665543333333
No 259
>3uc1_A DNA gyrase subunit A; DNA binding protein, topoisomerase, isomerase; HET: DNA; 1.65A {Mycobacterium tuberculosis}
Probab=88.74 E-value=24 Score=37.86 Aligned_cols=159 Identities=10% Similarity=0.109 Sum_probs=93.2
Q ss_pred CceeEEE-Ee----CCEEEEEecCCeEEEEeC-C---CCC--ceeeEcCCCCCCccceeEEEeCCCCCeEEEEeecCCCc
Q 002318 22 GVITCMS-AG----NDVIVLGTSKGWLIRHDF-G---AGD--SYDIDLSAGRPGEQSIHKVFVDPGGSHCIATIVGSGGA 90 (936)
Q Consensus 22 ~~i~~l~-v~----~n~l~l~~~~g~l~ridl-~---~~~--~~~~~l~~~~~~~~~i~~i~lDp~G~hlli~~~~~~~g 90 (936)
+.|.++. +. +..+++++++|.+-|..+ . +.. ..-+.+. .++.+..+++-.+..++++.|+ +|
T Consensus 95 e~i~~~~~~~~~~~e~~~v~~T~~G~iKr~~l~~~~~~~r~G~~~i~lk----e~D~lv~~~~~~~~d~ill~T~---~G 167 (327)
T 3uc1_A 95 ERIAQVIQIRGYTDAPYLVLATRNGLVKKSKLTDFDSNRSGGIVAVNLR----DNDELVGAVLCSAGDDLLLVSA---NG 167 (327)
T ss_dssp CCEEEEEEESSTTSSSEEEEEETTSEEEEEEGGGGCCCCSSCEESCBCC----TTCCEEEEEEECTTCEEEEEET---TS
T ss_pred CEEEEEEEeccCCCCCEEEEEcCCCEEEEeEHHHhhccccCceEEEEEC----CCCEEEEEEEecCCCEEEEEEC---CC
Confidence 4555554 43 468999999999999987 2 111 1112222 1356667776556678888888 89
Q ss_pred cEEEEecCCCCceecc---------CC-CCceEEEEEecCCCCCCCCcceEEEEcCCCcEEEEEEecC---CcccceeeE
Q 002318 91 ETFYTHAKWSKPRVLS---------KL-KGLVVNAVAWNRQQITEASTKEIILGTDTGQLHEMAVDEK---DKREKYIKL 157 (936)
Q Consensus 91 ~~~Y~~~~~~k~k~L~---------kl-kg~~I~sVaw~~~~~~~~st~~iLiGt~~G~i~e~~i~~~---~~~~~~~k~ 157 (936)
..+.+....+.++.+. +| .|-.|.++..-++ ...+|+.|++|.+-.+.+..- .+..+.++.
T Consensus 168 ~~~rf~~~~~eip~~gr~a~Gv~~i~L~~~d~Vv~~~~~~~------~~~ll~~T~~G~~Krt~l~e~~~~~R~~~G~~~ 241 (327)
T 3uc1_A 168 QSIRFSATDEALRPMGRATSGVQGMRFNIDDRLLSLNVVRE------GTYLLVATSGGYAKRTAIEEYPVQGRGGKGVLT 241 (327)
T ss_dssp EEEEEECCTTTSCCCCTTSBCEESSCCCTTCCEEEEEECCT------TCEEEEEETTSEEEEEEGGGSCBCCTTSCCEES
T ss_pred eEEEEECcccccCcCCcCCCCeeeecCCCCCEEEEEEEECC------CCEEEEEeCCCcEEEEEHHHccccCcCCCcEEE
Confidence 9988776521222222 22 2334555554421 237999999998888876422 111122332
Q ss_pred EeeeCCCCCceeeEEEEeeccCCCceEEEEEECCCeEEEEec
Q 002318 158 LFELNELPEAFMGLQMETASLSNGTRYYVMAVTPTRLYSFTG 199 (936)
Q Consensus 158 v~~l~~~~~~I~gi~~~~~~~~~~~~~~i~ast~~rly~f~~ 199 (936)
+++.+..+.+-++.... +...++++|...++..|.-
T Consensus 242 -~~l~~~~d~lv~~~~~~-----~~~~i~l~T~~G~~ir~~~ 277 (327)
T 3uc1_A 242 -VMYDRRRGRLVGALIVD-----DDSELYAVTSGGGVIRTAA 277 (327)
T ss_dssp -SCCCTTTCSEEEEEEEC-----TTCEEEEEEGGGCEEEEEG
T ss_pred -EEecCCCCeEEEEEEeC-----CCccEEEEcCCCeEEEEeh
Confidence 35544234566665541 2346777788888887853
No 260
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=88.64 E-value=4.4 Score=41.85 Aligned_cols=50 Identities=14% Similarity=0.178 Sum_probs=40.0
Q ss_pred HHHHchhhHHHHHHhcCC------------hhhHHHHHHHHHHHHHhcCCHHHHHHHHHHhc
Q 002318 369 KVYLDMKEYAAALANCRD------------PLQRDQVYLVQAEAAFATKDFHRAASFYAKIN 418 (936)
Q Consensus 369 ~~ll~~~~f~~Al~~~~~------------~~~~~~I~~~~~~~L~~~g~y~~Aa~~y~~~~ 418 (936)
..++..|+|++|+.+.+. +.....+....|..++..|+|++|...|.+..
T Consensus 35 ~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 96 (311)
T 3nf1_A 35 IQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDAL 96 (311)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 457788999999988653 23345778889999999999999999988765
No 261
>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A
Probab=88.45 E-value=3.3 Score=45.59 Aligned_cols=112 Identities=5% Similarity=-0.115 Sum_probs=72.6
Q ss_pred EEEeCCEEEEEecCCeEEEEeC-CCCCceeeEcCCCCCCccceeEEEeCC--------CCCeEEEEeecCCCccEEEEec
Q 002318 27 MSAGNDVIVLGTSKGWLIRHDF-GAGDSYDIDLSAGRPGEQSIHKVFVDP--------GGSHCIATIVGSGGAETFYTHA 97 (936)
Q Consensus 27 l~v~~n~l~l~~~~g~l~ridl-~~~~~~~~~l~~~~~~~~~i~~i~lDp--------~G~hlli~~~~~~~g~~~Y~~~ 97 (936)
..-.+++++-|..+++|..+|. .++......+....+=...|..+-..| .|+.++.++. |+...-++.
T Consensus 97 ~~~~~~~las~~~d~~v~lw~~~~~~~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~---D~tv~~Wd~ 173 (393)
T 4gq1_A 97 SPVYSLFLACVCQDNTVRLIITKNETIITQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQVIASVGD---DCTLIIWRL 173 (393)
T ss_dssp CCEEEEEEEEEETTSCEEEEEEETTEEEEEEEECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEET---TSEEEEEEE
T ss_pred cCCCCCEEEEEeCCCcEEEEECCCCccceeeeecccCCCCCceEEEEEccccccccCCCCCEEEEEEC---CCeEEEEEC
Confidence 3344567888889999999999 544333222221112246899998877 5666666666 898888876
Q ss_pred CCCC-ceeccCCCCceEEEEEecCCCCCCCCcceEEEEcCCCcEEEEEEec
Q 002318 98 KWSK-PRVLSKLKGLVVNAVAWNRQQITEASTKEIILGTDTGQLHEMAVDE 147 (936)
Q Consensus 98 ~~~k-~k~L~klkg~~I~sVaw~~~~~~~~st~~iLiGt~~G~i~e~~i~~ 147 (936)
...+ ...+... .-.|.+|+|+|. ....++.|+.+|.|....+..
T Consensus 174 ~~~~~~~~~~~~-~~~v~~v~~~p~-----~~~~l~~~~~d~~v~~wd~~t 218 (393)
T 4gq1_A 174 TDEGPILAGYPL-SSPGISVQFRPS-----NPNQLIVGERNGNIRIFDWTL 218 (393)
T ss_dssp ETTEEEEEEEEC-SSCEEEEEEETT-----EEEEEEEEETTSEEEEEETTC
T ss_pred CCCceeeeecCC-CCCcEEEEECCC-----CCceEEecCCCCEEEEEECCC
Confidence 4432 2333332 348899999953 223688899999988776643
No 262
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=88.42 E-value=5.4 Score=37.92 Aligned_cols=28 Identities=21% Similarity=0.342 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHhc
Q 002318 391 DQVYLVQAEAAFATKDFHRAASFYAKIN 418 (936)
Q Consensus 391 ~~I~~~~~~~L~~~g~y~~Aa~~y~~~~ 418 (936)
..|+..-|..++.+|+|++|...|.+..
T Consensus 5 ~~iy~~lG~~~~~~g~~~~A~~~~~~al 32 (184)
T 3vtx_A 5 TTIYMDIGDKKRTKGDFDGAIRAYKKVL 32 (184)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4677888999999999999999999875
No 263
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Probab=88.07 E-value=0.16 Score=47.95 Aligned_cols=36 Identities=25% Similarity=0.699 Sum_probs=29.3
Q ss_pred ecccccccccchhhhhcccccccccccCCCCCCCCEEEEcCCChhHHHhHHHHHh
Q 002318 830 IDRDEDCGVCRRKILVAGRDYRMARGYASVGPMAPFYVFPCGHAFHAQCLIAHVT 884 (936)
Q Consensus 830 i~~~~~C~~C~k~L~~~~~~~~~~~~~~~~~~~~~fvvFpCgH~fH~~CL~~~~~ 884 (936)
++..-.|.+|...+.. | +.-+|||.|+..|+...+.
T Consensus 28 l~~~~~C~IC~~~~~~------------------p-v~~~CgH~FC~~Ci~~~~~ 63 (141)
T 3knv_A 28 LEAKYLCSACRNVLRR------------------P-FQAQCGHRYCSFCLASILS 63 (141)
T ss_dssp CCGGGBCTTTCSBCSS------------------E-EECTTSCEEEHHHHHHHGG
T ss_pred CCcCcCCCCCChhhcC------------------c-EECCCCCccCHHHHHHHHh
Confidence 4556789999987766 5 4469999999999999765
No 264
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=88.00 E-value=12 Score=37.70 Aligned_cols=49 Identities=14% Similarity=0.120 Sum_probs=38.6
Q ss_pred HHHchhhHHHHHHhcCChh----hHHHHHHHHHHHHHhcCCHHHHHHHHHHhc
Q 002318 370 VYLDMKEYAAALANCRDPL----QRDQVYLVQAEAAFATKDFHRAASFYAKIN 418 (936)
Q Consensus 370 ~ll~~~~f~~Al~~~~~~~----~~~~I~~~~~~~L~~~g~y~~Aa~~y~~~~ 418 (936)
.+...|+|++|+++.+... ....+....|..++..|+|++|...|.+..
T Consensus 52 ~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al 104 (275)
T 1xnf_A 52 LYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVL 104 (275)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHcccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 4667899999998876321 234677788999999999999999998875
No 265
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=87.98 E-value=8.2 Score=37.40 Aligned_cols=79 Identities=15% Similarity=0.117 Sum_probs=52.0
Q ss_pred HHHchhhHHHHHHhcCCh----hhHHHHHHHHHHHHHhcCCHHHHHHHHHHhc--CC---CChHHHHHHhcCc-ChHHHH
Q 002318 370 VYLDMKEYAAALANCRDP----LQRDQVYLVQAEAAFATKDFHRAASFYAKIN--YI---LSFEEITLKFISV-SEQDAL 439 (936)
Q Consensus 370 ~ll~~~~f~~Al~~~~~~----~~~~~I~~~~~~~L~~~g~y~~Aa~~y~~~~--~~---~~~E~v~lkFl~~-~~~~~L 439 (936)
.++..|+|++|+++.+.. ..-..+....|..++..|+|++|...|.+.. .. ..+-.....+... ++.+.-
T Consensus 17 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~A 96 (225)
T 2vq2_A 17 EYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPDSAEINNNYGWFLCGRLNRPAES 96 (225)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCCHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCcHHHH
Confidence 467789999999987531 1224577788999999999999999998865 11 1122233344556 666555
Q ss_pred HHHHHHHhh
Q 002318 440 RTFLLRKLD 448 (936)
Q Consensus 440 ~~YL~~~l~ 448 (936)
..++..-+.
T Consensus 97 ~~~~~~~~~ 105 (225)
T 2vq2_A 97 MAYFDKALA 105 (225)
T ss_dssp HHHHHHHHT
T ss_pred HHHHHHHHc
Confidence 555555444
No 266
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens}
Probab=87.96 E-value=25 Score=38.55 Aligned_cols=157 Identities=20% Similarity=0.270 Sum_probs=95.4
Q ss_pred ceeEEEEeCCEEEEEecCCeEEEEeC-------CCCCceeeEcCC--CCCCccceeEEEeCCCCCeEEEEeecCCCccEE
Q 002318 23 VITCMSAGNDVIVLGTSKGWLIRHDF-------GAGDSYDIDLSA--GRPGEQSIHKVFVDPGGSHCIATIVGSGGAETF 93 (936)
Q Consensus 23 ~i~~l~v~~n~l~l~~~~g~l~ridl-------~~~~~~~~~l~~--~~~~~~~i~~i~lDp~G~hlli~~~~~~~g~~~ 93 (936)
.|..++...+..++.+.+|.|+-+=. .+. ......|. .......+..+.+...+.|.++-++ +|.+|
T Consensus 54 ~i~~i~~G~~~~~~l~~~G~v~~wG~n~~GqLG~g~-~~~~~~p~~v~~~~~~~~~~v~i~~G~~h~~al~~---~G~v~ 129 (389)
T 3kci_A 54 RPVQLIGGEQTLFAVTADGKLYATGYGAGGRLGIGG-TESVSTPTLLESIQHVFIKKVAVNSGGKHCLALSS---EGEVY 129 (389)
T ss_dssp CEEEEEEETTEEEEEETTSCEEEEECCGGGTTSSSS-SCCEEEEEECGGGTTSCEEEEEECTTCSEEEEEET---TSCEE
T ss_pred ceEEEEeCCCeEEEEcCCCcEEEEECCCCCCCCCCC-cCCccCCEEcccccCCceeEEEECcCCCeEEEEcC---CCCEE
Confidence 57899999999999999999999932 111 11222221 1112345666788888999998888 89999
Q ss_pred EEecCC------------CCceeccCCCCceEEEEEecCCCCCCCCcceEEEEcCCCcEEEEEEecC-----Cccccee-
Q 002318 94 YTHAKW------------SKPRVLSKLKGLVVNAVAWNRQQITEASTKEIILGTDTGQLHEMAVDEK-----DKREKYI- 155 (936)
Q Consensus 94 Y~~~~~------------~k~k~L~klkg~~I~sVaw~~~~~~~~st~~iLiGt~~G~i~e~~i~~~-----~~~~~~~- 155 (936)
-+..+. ..++.+..+.+..|..|+=... ..++=|++|.||-.--+.. ...+...
T Consensus 130 ~wG~n~~GqLG~g~~~~~~~p~~v~~l~~~~i~~va~G~~--------hs~alt~~G~v~~wG~n~~GqLG~~~~~~~~~ 201 (389)
T 3kci_A 130 SWGEAEDGKLGHGNRSPCDRPRVIESLRGIEVVDVAAGGA--------HSACVTAAGDLYTWGKGRYGRLGHSDSEDQLK 201 (389)
T ss_dssp EEECCGGGTTCSSSCCCEEEEEECGGGTTSCEEEEEECSS--------EEEEEETTSCEEEEECCGGGTTCSSSCCCEEE
T ss_pred EEeCCCCCcCCCCCCccCcCCeEecccCCCeEEEEEeCcC--------eEEEEeCCCeEEEeCCCCCCCcCCCCCccccc
Confidence 886422 2456677778888998886521 3455588999987654321 0111111
Q ss_pred -eEEeeeCCCCCceeeEEEEeeccCCCceEEEEEECCCeEEEEe
Q 002318 156 -KLLFELNELPEAFMGLQMETASLSNGTRYYVMAVTPTRLYSFT 198 (936)
Q Consensus 156 -k~v~~l~~~~~~I~gi~~~~~~~~~~~~~~i~ast~~rly~f~ 198 (936)
+.+-.+.+ .+|..|..- ......++++...++|.|-
T Consensus 202 p~~v~~~~~--~~v~~ia~G-----~g~~~t~~l~~~G~v~~wG 238 (389)
T 3kci_A 202 PKLVEALQG--HRVVDIACG-----SGDAQTLCLTDDDTVWSWG 238 (389)
T ss_dssp EEECGGGTT--SCEEEEEEC-----CSSCEEEEEETTTEEEEEE
T ss_pred ceEecccCC--CeEEEEEEc-----CCCcEEEEEccCCEEEEEe
Confidence 11111221 234444331 1124566667889999994
No 267
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=87.94 E-value=6.4 Score=42.87 Aligned_cols=42 Identities=10% Similarity=0.022 Sum_probs=33.4
Q ss_pred HHHHHHhcCC----------hhhHHHHHHHHHHHHHhcCCHHHHHHHHHHhc
Q 002318 377 YAAALANCRD----------PLQRDQVYLVQAEAAFATKDFHRAASFYAKIN 418 (936)
Q Consensus 377 f~~Al~~~~~----------~~~~~~I~~~~~~~L~~~g~y~~Aa~~y~~~~ 418 (936)
|++|+++.+. +.....+....|..++..|+|++|...|.+..
T Consensus 199 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 250 (411)
T 4a1s_A 199 LTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERL 250 (411)
T ss_dssp HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHH
Confidence 9999888653 22344678889999999999999999988765
No 268
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=87.52 E-value=5.5 Score=43.29 Aligned_cols=49 Identities=20% Similarity=0.198 Sum_probs=37.3
Q ss_pred HHHchhhHHHHHHhcCC-----------hhhHHHHHHHHHHHHHhcCCHHHHHHHHHHhc
Q 002318 370 VYLDMKEYAAALANCRD-----------PLQRDQVYLVQAEAAFATKDFHRAASFYAKIN 418 (936)
Q Consensus 370 ~ll~~~~f~~Al~~~~~-----------~~~~~~I~~~~~~~L~~~g~y~~Aa~~y~~~~ 418 (936)
.+...|+|++|+++.+. +.....+....|.-+...|+|++|...|.+..
T Consensus 152 ~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al 211 (383)
T 3ulq_A 152 SYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSLFATNFLDLKQYEDAISHFQKAY 211 (383)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 46677888888877642 12344677788999999999999999988765
No 269
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=87.51 E-value=3.7 Score=41.04 Aligned_cols=49 Identities=16% Similarity=0.230 Sum_probs=40.1
Q ss_pred HHHchhhHHHHHHhcCC-----hhh------HHHHHHHHHHHHHhcCCHHHHHHHHHHhc
Q 002318 370 VYLDMKEYAAALANCRD-----PLQ------RDQVYLVQAEAAFATKDFHRAASFYAKIN 418 (936)
Q Consensus 370 ~ll~~~~f~~Al~~~~~-----~~~------~~~I~~~~~~~L~~~g~y~~Aa~~y~~~~ 418 (936)
.+...|+|++|++..+. |.. ...+....|..++..|+|++|...|.+..
T Consensus 47 ~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~ 106 (258)
T 3uq3_A 47 AEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFARIGNAYHKLGDLKKTIEYYQKSL 106 (258)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 47888999999998763 211 15788899999999999999999998875
No 270
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=87.46 E-value=9.4 Score=38.72 Aligned_cols=106 Identities=10% Similarity=0.085 Sum_probs=64.3
Q ss_pred ceeEEEEeC-CEEEE-E-ecCCeEEEEeCCCCCceeeEcCCCCCCccceeEEEeCCCCCeEEEEeecCCCccEEEEecCC
Q 002318 23 VITCMSAGN-DVIVL-G-TSKGWLIRHDFGAGDSYDIDLSAGRPGEQSIHKVFVDPGGSHCIATIVGSGGAETFYTHAKW 99 (936)
Q Consensus 23 ~i~~l~v~~-n~l~l-~-~~~g~l~ridl~~~~~~~~~l~~~~~~~~~i~~i~lDp~G~hlli~~~~~~~g~~~Y~~~~~ 99 (936)
...++++.. +.+|+ + ..+|.|.++|........+... +...+..|.+||.|. ++++.. ++..+.++...
T Consensus 25 ~p~~i~~~~~g~l~v~~~~~~~~i~~~~~~~~~~~~~~~~----~~~~p~~i~~~~~g~-l~v~~~---~~~i~~~d~~~ 96 (270)
T 1rwi_B 25 SPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTVLPFN----GLYQPQGLAVDGAGT-VYVTDF---NNRVVTLAAGS 96 (270)
T ss_dssp CEEEEEECTTCCEEEEECSSSCEEEEECC-----EECCCC----SCCSCCCEEECTTCC-EEEEET---TTEEEEECTTC
T ss_pred CccceEECCCCCEEEEccCCCCcEEEecCCCcccceEeeC----CcCCcceeEECCCCC-EEEEcC---CCEEEEEeCCC
Confidence 457888853 46777 6 6778999999832222222111 124568899999998 777664 56777676655
Q ss_pred CCceeccCCCCceEEEEEecCCCCCCCCcceEEEEc-CCCcEEEE
Q 002318 100 SKPRVLSKLKGLVVNAVAWNRQQITEASTKEIILGT-DTGQLHEM 143 (936)
Q Consensus 100 ~k~k~L~klkg~~I~sVaw~~~~~~~~st~~iLiGt-~~G~i~e~ 143 (936)
.....+..-....+.++++++ .+.+.+++ .+|.|+..
T Consensus 97 ~~~~~~~~~~~~~p~~i~~~~-------~g~l~v~~~~~~~i~~~ 134 (270)
T 1rwi_B 97 NNQTVLPFDGLNYPEGLAVDT-------QGAVYVADRGNNRVVKL 134 (270)
T ss_dssp SCCEECCCCSCSSEEEEEECT-------TCCEEEEEGGGTEEEEE
T ss_pred ceEeeeecCCcCCCcceEECC-------CCCEEEEECCCCEEEEE
Confidence 444433211124688999983 23577764 45777766
No 271
>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A
Probab=87.03 E-value=13 Score=40.53 Aligned_cols=164 Identities=10% Similarity=0.044 Sum_probs=82.0
Q ss_pred CCCceeEEEEeC---CEEEEEecCCeEEEEeC-CCCCceeeEcCCC--------------------CCCccceeEE-EeC
Q 002318 20 GRGVITCMSAGN---DVIVLGTSKGWLIRHDF-GAGDSYDIDLSAG--------------------RPGEQSIHKV-FVD 74 (936)
Q Consensus 20 ~~~~i~~l~v~~---n~l~l~~~~g~l~ridl-~~~~~~~~~l~~~--------------------~~~~~~i~~i-~lD 74 (936)
....+.+++.+. +.++.|..+|+|..+|+ .+....+..-... ......+..+ |-.
T Consensus 185 ~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~v~~v~~~~ 264 (393)
T 4gq1_A 185 LSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPWLLTLNTLPLVNTCHSSGIASSLANVRWIG 264 (393)
T ss_dssp CSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC----------CSCCCSEEEESGGGC------CCSSSCSEEEEET
T ss_pred CCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCcccccccccCCcccceEEecccccceeeeecccccccceeeeeec
Confidence 345688999985 36888889999999999 5443222110000 0112345555 446
Q ss_pred CCCCeEEEEeecCCCccEEEEecCCCC-ceeccCCCCceEEEEEecCCCC-------------CCCCcceEEE-EcCCCc
Q 002318 75 PGGSHCIATIVGSGGAETFYTHAKWSK-PRVLSKLKGLVVNAVAWNRQQI-------------TEASTKEIIL-GTDTGQ 139 (936)
Q Consensus 75 p~G~hlli~~~~~~~g~~~Y~~~~~~k-~k~L~klkg~~I~sVaw~~~~~-------------~~~st~~iLi-Gt~~G~ 139 (936)
|.|..++.++. ++....++....+ .+.+.. ....+.++++.+... .....+.+++ |+.+|.
T Consensus 265 ~dg~~l~s~s~---d~~i~vwd~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sgs~Dg~ 340 (393)
T 4gq1_A 265 SDGSGILAMCK---SGAWLRWNLFANNDYNEISD-STMKLGPKNLLPNVQGISLFPSLLGACPHPRYMDYFATAHSQHGL 340 (393)
T ss_dssp TTTCEEEEECT---TSEEEEEEC--------------------CCSCSEEEECSSCCSSCCEECSSCTTEEEEEETTTTE
T ss_pred CCCCEEEEEeC---CCCEEEEECccCCCCceEee-ecCccccEEEccccccccccCcceeEEEccCCCCEEEEEECCCCE
Confidence 88998888776 6776665543321 111111 011223333321100 0011234544 677899
Q ss_pred EEEEEEecCCcccceeeEEeeeCCCCCceeeEEEEeeccCCCceEEEEEECCC-eEEEEec
Q 002318 140 LHEMAVDEKDKREKYIKLLFELNELPEAFMGLQMETASLSNGTRYYVMAVTPT-RLYSFTG 199 (936)
Q Consensus 140 i~e~~i~~~~~~~~~~k~v~~l~~~~~~I~gi~~~~~~~~~~~~~~i~ast~~-rly~f~~ 199 (936)
|....+..+. ......... .+|.++.|.. +.++++.++... .|++..|
T Consensus 341 V~lwd~~~~~----~~~~~~~~~---~~V~svafsp-----dG~~LA~as~~Gv~lvrL~g 389 (393)
T 4gq1_A 341 IQLINTYEKD----SNSIPIQLG---MPIVDFCWHQ-----DGSHLAIATEGSVLLTRLMG 389 (393)
T ss_dssp EEEEETTCTT----CCEEEEECS---SCEEEEEECT-----TSSEEEEEESSEEEEEEEGG
T ss_pred EEEEECCCCc----EEEEecCCC---CcEEEEEEcC-----CCCEEEEEeCCCeEEEEEeC
Confidence 9877665431 122222222 5799999973 346788877643 4555555
No 272
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=86.94 E-value=12 Score=39.17 Aligned_cols=121 Identities=7% Similarity=0.012 Sum_probs=68.4
Q ss_pred CCEEE-EEecCCeEEEEeC-CCCCceeeEcCCCCCCccceeEEEeCCCCCeEEEEeecCCCccEEEEecCCCCc--eecc
Q 002318 31 NDVIV-LGTSKGWLIRHDF-GAGDSYDIDLSAGRPGEQSIHKVFVDPGGSHCIATIVGSGGAETFYTHAKWSKP--RVLS 106 (936)
Q Consensus 31 ~n~l~-l~~~~g~l~ridl-~~~~~~~~~l~~~~~~~~~i~~i~lDp~G~hlli~~~~~~~g~~~Y~~~~~~k~--k~L~ 106 (936)
.+.++ .+..+|.|..+|+ .......+..+ ...+ .+-++|.|.+++++.. +++..+-+.....+. +.+.
T Consensus 9 ~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~-----~~~~-~~~~s~dg~~l~~~~~--~~~~i~~~d~~~~~~~~~~~~ 80 (331)
T 3u4y_A 9 SNFGIVVEQHLRRISFFSTDTLEILNQITLG-----YDFV-DTAITSDCSNVVVTSD--FCQTLVQIETQLEPPKVVAIQ 80 (331)
T ss_dssp CCEEEEEEGGGTEEEEEETTTCCEEEEEECC-----CCEE-EEEECSSSCEEEEEES--TTCEEEEEECSSSSCEEEEEE
T ss_pred CCEEEEEecCCCeEEEEeCcccceeeeEEcc-----CCcc-eEEEcCCCCEEEEEeC--CCCeEEEEECCCCceeEEecc
Confidence 45544 4456789999999 55444455544 2345 8899999999888876 245666666655543 2333
Q ss_pred CCCCceEEEEEecCCCCCCCCcceEEEEcCCC---cEEEEEEecCCcccceeeEEeeeCCCCCceeeEEEE
Q 002318 107 KLKGLVVNAVAWNRQQITEASTKEIILGTDTG---QLHEMAVDEKDKREKYIKLLFELNELPEAFMGLQME 174 (936)
Q Consensus 107 klkg~~I~sVaw~~~~~~~~st~~iLiGt~~G---~i~e~~i~~~~~~~~~~k~v~~l~~~~~~I~gi~~~ 174 (936)
. .+....+++|++. .+.++++...| .|....+... + ....+... ....++.|.
T Consensus 81 ~-~~~~~~~~~~s~d------g~~l~~~~~~~~~~~i~v~d~~~~----~-~~~~~~~~---~~~~~~~~s 136 (331)
T 3u4y_A 81 E-GQSSMADVDITPD------DQFAVTVTGLNHPFNMQSYSFLKN----K-FISTIPIP---YDAVGIAIS 136 (331)
T ss_dssp E-CSSCCCCEEECTT------SSEEEECCCSSSSCEEEEEETTTT----E-EEEEEECC---TTEEEEEEC
T ss_pred c-CCCCccceEECCC------CCEEEEecCCCCcccEEEEECCCC----C-eEEEEECC---CCccceEEC
Confidence 1 2223333899842 22344333332 6777765433 1 22222333 335788876
No 273
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=86.81 E-value=8.9 Score=41.06 Aligned_cols=117 Identities=14% Similarity=0.102 Sum_probs=68.3
Q ss_pred ceeEEEEeCC--EEEEEe-cCCeEEEEeCCCCCceeeE-cCCCCCCccceeEEEeCCCCCeEEEEeecCCC--ccEEE--
Q 002318 23 VITCMSAGND--VIVLGT-SKGWLIRHDFGAGDSYDID-LSAGRPGEQSIHKVFVDPGGSHCIATIVGSGG--AETFY-- 94 (936)
Q Consensus 23 ~i~~l~v~~n--~l~l~~-~~g~l~ridl~~~~~~~~~-l~~~~~~~~~i~~i~lDp~G~hlli~~~~~~~--g~~~Y-- 94 (936)
...+++++.+ .++++. .+|.|..+|+.......+. ++...........+.++|.|++++++.. . +....
T Consensus 212 ~~~~~~~spdg~~l~v~~~~~~~v~v~~~~~g~~~~~~~~~~~~~~~~~~~~i~~spdg~~l~v~~~---~~~~~i~v~~ 288 (361)
T 3scy_A 212 GPRHLIFNSDGKFAYLINEIGGTVIAFRYADGMLDEIQTVAADTVNAQGSGDIHLSPDGKYLYASNR---LKADGVAIFK 288 (361)
T ss_dssp CEEEEEECTTSSEEEEEETTTCEEEEEEEETTEEEEEEEEESCSSCCCCEEEEEECTTSSEEEEEEC---SSSCEEEEEE
T ss_pred CCeEEEEcCCCCEEEEEcCCCCeEEEEEecCCceEEeEEEecCCCCCCCcccEEECCCCCEEEEECC---CCCCEEEEEE
Confidence 3578888865 787777 5889999999322222221 2211111234678999999999988776 3 33332
Q ss_pred EecCCCCceeccCCC-CceEEEEEecCCCCCCCCcceEEEEc-CCCcEEEEEEecC
Q 002318 95 THAKWSKPRVLSKLK-GLVVNAVAWNRQQITEASTKEIILGT-DTGQLHEMAVDEK 148 (936)
Q Consensus 95 ~~~~~~k~k~L~klk-g~~I~sVaw~~~~~~~~st~~iLiGt-~~G~i~e~~i~~~ 148 (936)
+.....+.+.+..+. |..+.+++|+++ .+.++++. .++.|..+.++..
T Consensus 289 ~~~~~g~~~~~~~~~~g~~~~~~~~spd------g~~l~~~~~~~~~v~v~~~d~~ 338 (361)
T 3scy_A 289 VDETNGTLTKVGYQLTGIHPRNFIITPN------GKYLLVACRDTNVIQIFERDQA 338 (361)
T ss_dssp ECTTTCCEEEEEEEECSSCCCEEEECTT------SCEEEEEETTTTEEEEEEECTT
T ss_pred EcCCCCcEEEeeEecCCCCCceEEECCC------CCEEEEEECCCCCEEEEEEECC
Confidence 322222333332211 567889999843 23566665 4577776666643
No 274
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=86.79 E-value=0.18 Score=41.75 Aligned_cols=37 Identities=19% Similarity=0.547 Sum_probs=27.6
Q ss_pred ccccccccchhhhhcccccccccccCCCCCCCCEEEEcCCChhHHHhHHHHHhhc
Q 002318 832 RDEDCGVCRRKILVAGRDYRMARGYASVGPMAPFYVFPCGHAFHAQCLIAHVTQC 886 (936)
Q Consensus 832 ~~~~C~~C~k~L~~~~~~~~~~~~~~~~~~~~~fvvFpCgH~fH~~CL~~~~~~~ 886 (936)
....|++|...+.. +. + .+ .|+|.||..|+.+.+...
T Consensus 14 ~i~~C~IC~~~i~~-g~--~-----------C~----~C~h~fH~~Ci~kWl~~~ 50 (74)
T 2ct0_A 14 AVKICNICHSLLIQ-GQ--S-----------CE----TCGIRMHLPCVAKYFQSN 50 (74)
T ss_dssp SSCBCSSSCCBCSS-SE--E-----------CS----SSCCEECHHHHHHHSTTC
T ss_pred CCCcCcchhhHccc-CC--c-----------cC----CCCchhhHHHHHHHHHhc
Confidence 35789999988864 11 1 12 899999999999987544
No 275
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=86.77 E-value=0.053 Score=49.49 Aligned_cols=35 Identities=20% Similarity=0.488 Sum_probs=27.0
Q ss_pred ccccccccchhhhhcccccccccccCCCCCCCCEEEEcCCChhHHHhHHHHHh
Q 002318 832 RDEDCGVCRRKILVAGRDYRMARGYASVGPMAPFYVFPCGHAFHAQCLIAHVT 884 (936)
Q Consensus 832 ~~~~C~~C~k~L~~~~~~~~~~~~~~~~~~~~~fvvFpCgH~fH~~CL~~~~~ 884 (936)
..-.|.+|...+.. |++..+|||.|+..|+.....
T Consensus 21 ~~~~C~IC~~~~~~------------------pv~~~~CgH~fC~~Ci~~~~~ 55 (117)
T 1jm7_B 21 KLLRCSRCTNILRE------------------PVCLGGCEHIFCSNCVSDCIG 55 (117)
T ss_dssp HTTSCSSSCSCCSS------------------CBCCCSSSCCBCTTTGGGGTT
T ss_pred hCCCCCCCChHhhC------------------ccEeCCCCCHHHHHHHHHHhc
Confidence 35679999877655 544449999999999987754
No 276
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=86.77 E-value=13 Score=38.61 Aligned_cols=64 Identities=6% Similarity=-0.017 Sum_probs=42.7
Q ss_pred ceeEEEEe--CCEEEEEe------------cCCeEEEEeC-CCCCceeeEcCCCCCCccceeEEEeCCCCCeEEEEeecC
Q 002318 23 VITCMSAG--NDVIVLGT------------SKGWLIRHDF-GAGDSYDIDLSAGRPGEQSIHKVFVDPGGSHCIATIVGS 87 (936)
Q Consensus 23 ~i~~l~v~--~n~l~l~~------------~~g~l~ridl-~~~~~~~~~l~~~~~~~~~i~~i~lDp~G~hlli~~~~~ 87 (936)
.+.+++++ ++.++++. .++.|.++|+ ....+..++.+ ..+..+.++|.|.+++++ +
T Consensus 83 ~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~------~~~~~~~~s~dg~~l~~~-~-- 153 (337)
T 1pby_B 83 SLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEAP------RQITMLAWARDGSKLYGL-G-- 153 (337)
T ss_dssp CTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEECC------SSCCCEEECTTSSCEEEE-S--
T ss_pred cccceEECCCCCEEEEEecccccccccccccCceEEEEECCCCcEEEEEeCC------CCcceeEECCCCCEEEEe-C--
Confidence 35667776 45788875 4689999999 44434444432 346778899999988887 3
Q ss_pred CCccEEEEec
Q 002318 88 GGAETFYTHA 97 (936)
Q Consensus 88 ~~g~~~Y~~~ 97 (936)
+..+.+..
T Consensus 154 --~~i~~~d~ 161 (337)
T 1pby_B 154 --RDLHVMDP 161 (337)
T ss_dssp --SSEEEEET
T ss_pred --CeEEEEEC
Confidence 55554543
No 277
>3l6v_A GYRA, DNA gyrase subunit A; gyrase A C-terminal domain, GYRA C-terminal domain, DNA wrapping, beta-strand-bearing proline, ATP-binding; HET: DNA; 2.19A {Xanthomonas campestris PV}
Probab=86.76 E-value=24 Score=38.62 Aligned_cols=155 Identities=19% Similarity=0.254 Sum_probs=95.0
Q ss_pred EeCCEEEEEecCCeEEEEeC-C--CC-----CceeeEcCCCCCCccceeEEEeCCCCCeEEEEeecCCCccEEEEecC--
Q 002318 29 AGNDVIVLGTSKGWLIRHDF-G--AG-----DSYDIDLSAGRPGEQSIHKVFVDPGGSHCIATIVGSGGAETFYTHAK-- 98 (936)
Q Consensus 29 v~~n~l~l~~~~g~l~ridl-~--~~-----~~~~~~l~~~~~~~~~i~~i~lDp~G~hlli~~~~~~~g~~~Y~~~~-- 98 (936)
..+.++++.+++|.|-|..+ . +. -...+.+. .+..+..++.-.+..++++-|+ .|..|.+...
T Consensus 5 ~~e~~~v~lT~~GyIKr~~l~~y~~~~r~g~g~~~~~lk----e~D~l~~~~~~~t~d~ll~fT~---~G~~~~~~~~ei 77 (370)
T 3l6v_A 5 APEDVVVTLSHAGYAKRQPVSAYRAQRRGGRGRSAASTK----EEDFIDQLWLVNTHDTLLTFTS---SGKVFWLPVHQL 77 (370)
T ss_dssp CCCCEEEEEESSCEEEEEEHHHHHHTCCCCCCSEEEECS----CCCCEEEEEEECTTCEEEEEET---TSEEEEEEGGGS
T ss_pred cCCCEEEEEeCCCEEEEeeHHHhhhhccCCCCceecccC----CCCEEEEEEEecCCCEEEEEeC---CCeEEEEEHHHC
Confidence 35678999999999999976 1 11 12233332 2467888888777788998888 8999988732
Q ss_pred -----CCCceeccC---C-CCceEEEEEecCCCCCCCCcceEEEEcCCCcEEEEEEecCCcccceeeEEeeeCCCCCcee
Q 002318 99 -----WSKPRVLSK---L-KGLVVNAVAWNRQQITEASTKEIILGTDTGQLHEMAVDEKDKREKYIKLLFELNELPEAFM 169 (936)
Q Consensus 99 -----~~k~k~L~k---l-kg~~I~sVaw~~~~~~~~st~~iLiGt~~G~i~e~~i~~~~~~~~~~k~v~~l~~~~~~I~ 169 (936)
..+-.++.+ | .|-.|.++.--+.. . ....+|+.|++|.+--+.+..-...-+.=...++|.+. ..+.
T Consensus 78 p~~~r~a~G~~i~~ll~L~~~e~Iv~~~~~~~~-~--~~~~ll~~T~~G~vKrt~l~e~~~~~~~G~~ai~L~~~-d~lv 153 (370)
T 3l6v_A 78 PEAGSNARGRPIINWIPLESGERVQAVLPVREY-A--DNRYVFMATRNGTVKKTPLSEFAFRLARGKIAINLDEG-DALV 153 (370)
T ss_dssp CBCCTTSCCEEGGGSCCCCTTCCEEEEEEESCC-C--TTCEEEEEETTSEEEEEEGGGGCSCCTTCEESSCCCTT-CCEE
T ss_pred cCCCcccCCcCHhhccCCCCCCEEEEEEEeccC-C--CCcEEEEEeCCCeEEEeEHHHhhcccCCceEEEEeCCC-CEEE
Confidence 123333332 2 34455555433221 1 23489999999999888875321100111223466542 4566
Q ss_pred eEEEEeeccCCCceEEEEEECCCeEEEEec
Q 002318 170 GLQMETASLSNGTRYYVMAVTPTRLYSFTG 199 (936)
Q Consensus 170 gi~~~~~~~~~~~~~~i~ast~~rly~f~~ 199 (936)
++.... +...++++|...+++.|.-
T Consensus 154 ~v~~~~-----~~~~i~l~T~~G~~irf~~ 178 (370)
T 3l6v_A 154 GVALTD-----GDRDVLLFASNGKTVRFGE 178 (370)
T ss_dssp EEEEEC-----SCCEEEEEETTSEEEEEEG
T ss_pred EEEEeC-----CCceEEEEeCCCeEEEEEc
Confidence 666542 2346888899999998864
No 278
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=86.59 E-value=9.2 Score=42.29 Aligned_cols=135 Identities=9% Similarity=0.166 Sum_probs=84.9
Q ss_pred ceeEEEEeCC--EEEEEecCCeEEEEeC-CCC-----------CceeeEcCCCCCCccceeEEEeCCCCCeEEEEeecCC
Q 002318 23 VITCMSAGND--VIVLGTSKGWLIRHDF-GAG-----------DSYDIDLSAGRPGEQSIHKVFVDPGGSHCIATIVGSG 88 (936)
Q Consensus 23 ~i~~l~v~~n--~l~l~~~~g~l~ridl-~~~-----------~~~~~~l~~~~~~~~~i~~i~lDp~G~hlli~~~~~~ 88 (936)
.+..|+++|. .++.|..+|.++ +++ ... ....+++| . |+.+.+ .|..|.|+ .
T Consensus 39 ~~nlLais~~~gll~a~~~~~l~v-~~~~~l~~~~~~~~~~~~~~~~~~lp------~-V~~l~f--d~~~L~v~-~--- 104 (388)
T 1xip_A 39 SLQNLDISNSKSLFVAASGSKAVV-GELQLLRDHITSDSTPLTFKWEKEIP------D-VIFVCF--HGDQVLVS-T--- 104 (388)
T ss_dssp CCBCEEEETTTTEEEEEETTEEEE-EEHHHHHHHHHSSSCCCCCSEEEECT------T-EEEEEE--ETTEEEEE-E---
T ss_pred cccEEEEcCCCCEEEEeCCCEEEE-EEhhHhhhhhccccccccceEEeeCC------C-eeEEEE--CCCEEEEE-c---
Confidence 4788888865 777777765544 876 221 11234443 3 899999 88999999 5
Q ss_pred CccEEEEecCCC-CceeccCCCCceEEEEEecCCCCCCCCcceEEEEcCCCcEEEEEEecCCcccceeeEEeeeCCCCCc
Q 002318 89 GAETFYTHAKWS-KPRVLSKLKGLVVNAVAWNRQQITEASTKEIILGTDTGQLHEMAVDEKDKREKYIKLLFELNELPEA 167 (936)
Q Consensus 89 ~g~~~Y~~~~~~-k~k~L~klkg~~I~sVaw~~~~~~~~st~~iLiGt~~G~i~e~~i~~~~~~~~~~k~v~~l~~~~~~ 167 (936)
+|....+...+. +.+.+..+ ...+.++.|.++ .++++|++|.|+-..+..+. ... +. ..
T Consensus 105 ~~~l~v~dv~sl~~~~~~~~~-~~~v~~i~~~~p--------~~av~~~dG~L~v~dl~~~~-----~~~---~~---~~ 164 (388)
T 1xip_A 105 RNALYSLDLEELSEFRTVTSF-EKPVFQLKNVNN--------TLVILNSVNDLSALDLRTKS-----TKQ---LA---QN 164 (388)
T ss_dssp SSEEEEEESSSTTCEEEEEEC-SSCEEEEEECSS--------EEEEEETTSEEEEEETTTCC-----EEE---EE---ES
T ss_pred CCcEEEEEchhhhccCcccee-ecceeeEEecCC--------CEEEEECCCCEEEEEccCCc-----ccc---cc---CC
Confidence 576766654332 32323222 235778877743 29999999999988886431 112 22 35
Q ss_pred eeeEEEEeeccCCCceEEEEEECCCeEEEEe
Q 002318 168 FMGLQMETASLSNGTRYYVMAVTPTRLYSFT 198 (936)
Q Consensus 168 I~gi~~~~~~~~~~~~~~i~ast~~rly~f~ 198 (936)
|+++.|.. .+ .+++..+..+.+|.
T Consensus 165 Vs~v~WSp------kG-~~vg~~dg~i~~~~ 188 (388)
T 1xip_A 165 VTSFDVTN------SQ-LAVLLKDRSFQSFA 188 (388)
T ss_dssp EEEEEECS------SE-EEEEETTSCEEEEE
T ss_pred ceEEEEcC------Cc-eEEEEcCCcEEEEc
Confidence 99999973 23 45556667677673
No 279
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=86.41 E-value=6.3 Score=40.14 Aligned_cols=49 Identities=18% Similarity=0.251 Sum_probs=40.6
Q ss_pred HHHchhhHHHHHHhcCC-----hh--hHHHHHHHHHHHHHhcCCHHHHHHHHHHhc
Q 002318 370 VYLDMKEYAAALANCRD-----PL--QRDQVYLVQAEAAFATKDFHRAASFYAKIN 418 (936)
Q Consensus 370 ~ll~~~~f~~Al~~~~~-----~~--~~~~I~~~~~~~L~~~g~y~~Aa~~y~~~~ 418 (936)
.+++.|+|++|+...+. |. ....+....|.-++..|+|++|...|.+..
T Consensus 24 ~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l 79 (261)
T 3qky_A 24 EFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFI 79 (261)
T ss_dssp HHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHH
Confidence 47888999999998652 22 346788899999999999999999998875
No 280
>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=85.90 E-value=0.29 Score=42.51 Aligned_cols=35 Identities=23% Similarity=0.487 Sum_probs=26.9
Q ss_pred cccccccchhhhhcccccccccccCCCCCCCCEEEE-cCCChhHHHhHHHHHh
Q 002318 833 DEDCGVCRRKILVAGRDYRMARGYASVGPMAPFYVF-PCGHAFHAQCLIAHVT 884 (936)
Q Consensus 833 ~~~C~~C~k~L~~~~~~~~~~~~~~~~~~~~~fvvF-pCgH~fH~~CL~~~~~ 884 (936)
...|.+|-..+.. . .++.+ +|||.|..+|+..++.
T Consensus 5 ~~~C~IC~~~~~~-----~------------~~~~l~~CgH~FC~~Cl~~~~~ 40 (94)
T 1wim_A 5 SSGCKLCLGEYPV-----E------------QMTTIAQCQCIFCTLCLKQYVE 40 (94)
T ss_dssp BCCCSSSCCCCBG-----G------------GEEEETTTTEEEEHHHHHHHHH
T ss_pred CcCCcccCccccc-----c------------cceEcCCCCCcccHHHHHHHHH
Confidence 4579999877655 2 45555 6999999999998764
No 281
>1wp5_A Topoisomerase IV; broken beta-propeller, hairpin-invaded beta-propeller, six- bladed beta-propeller; 1.79A {Geobacillus stearothermophilus} SCOP: b.68.10.1
Probab=85.77 E-value=19 Score=38.63 Aligned_cols=154 Identities=10% Similarity=0.101 Sum_probs=92.9
Q ss_pred eCCEEEEEecCCeEEEEeC---CCCCceeeEcCCCCCCccceeEEEeCCCCCeEEEEeecCCCccEEEEecCC-------
Q 002318 30 GNDVIVLGTSKGWLIRHDF---GAGDSYDIDLSAGRPGEQSIHKVFVDPGGSHCIATIVGSGGAETFYTHAKW------- 99 (936)
Q Consensus 30 ~~n~l~l~~~~g~l~ridl---~~~~~~~~~l~~~~~~~~~i~~i~lDp~G~hlli~~~~~~~g~~~Y~~~~~------- 99 (936)
.+.++++.+++|.|-|..+ .......+.+ + .++.+..++.-.+..++++-|+ .|..|.+....
T Consensus 4 ~e~~~v~lT~~G~IKr~~~~~~~~~~~~~~~l--k--e~D~l~~~~~~~t~d~ll~fT~---~Gr~~~~~~~elp~~~r~ 76 (323)
T 1wp5_A 4 SEDVIVTVTKDGYVKRTSLRSYAASNGQDFAM--K--DTDRLLAMLEMNTKDVLLLFTN---KGNYLYCPVHELPDIRWK 76 (323)
T ss_dssp CCEEEEEEETTCEEEEEEHHHHHHTTTCCCCC--C--TTCCEEEEEEEETTSEEEEEET---TSEEEEEEGGGSCBCCTT
T ss_pred CCcEEEEEeCCCEEEEeEHHHhhhcCcccccc--C--CCCEEEEEEEECCCCEEEEEEC---CCEEEEEEHHHCcCCCCC
Confidence 3567899999999999976 1111111222 1 2467778888778888999998 89999886411
Q ss_pred CCceeccCC----CCceEEEEEecCCCCCCCCcceEEEEcCCCcEEEEEEecCCccc-ceeeEEeeeCCCCCceeeEEEE
Q 002318 100 SKPRVLSKL----KGLVVNAVAWNRQQITEASTKEIILGTDTGQLHEMAVDEKDKRE-KYIKLLFELNELPEAFMGLQME 174 (936)
Q Consensus 100 ~k~k~L~kl----kg~~I~sVaw~~~~~~~~st~~iLiGt~~G~i~e~~i~~~~~~~-~~~k~v~~l~~~~~~I~gi~~~ 174 (936)
.+-.++.++ .|-.|.++.--++. . ....+|+.|++|.+--+.+..-...- +.=...+++.+. ..+.++...
T Consensus 77 a~G~~i~~~i~L~~~e~Iv~~~~~~~~-~--~~~~ll~~T~~G~iKrt~l~e~~~~~r~~G~~ai~l~e~-d~lv~~~~~ 152 (323)
T 1wp5_A 77 DLGQHIANIIPIDRDEEIIKAIPINDF-E--LNGYFLFVTRNGMVKKTELKHYKAQRYSKPLTGINLKND-DQVVDVHLT 152 (323)
T ss_dssp SCCEEGGGTSCCCTTCCEEEEEEESCT-T--SSCEEEEEETTSEEEEEEGGGGCCSCCSSCEECSCCCTT-CCEEEEEEE
T ss_pred CCCcChhhccCCCCCCEEEEEEEeccc-C--CCceEEEEeCCCeEEEeEHHHhhhccccCceEEEEeCCC-CEEEEEEEe
Confidence 233333332 34445554333221 1 12369999999999888874221100 111233466653 456666654
Q ss_pred eeccCCCceEEEEEECCCeEEEEec
Q 002318 175 TASLSNGTRYYVMAVTPTRLYSFTG 199 (936)
Q Consensus 175 ~~~~~~~~~~~i~ast~~rly~f~~ 199 (936)
. +...++++|...+++.|..
T Consensus 153 ~-----~~~~i~l~T~~G~~irf~~ 172 (323)
T 1wp5_A 153 D-----GMNELFLVTHNGYALWFDE 172 (323)
T ss_dssp C-----SCSEEEEEETTSEEEEEEG
T ss_pred C-----CCCEEEEEeCCCcEEEEEH
Confidence 2 2346778899999998864
No 282
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=85.50 E-value=43 Score=35.95 Aligned_cols=48 Identities=15% Similarity=0.281 Sum_probs=39.2
Q ss_pred HHchhhHHHHHHhcCC----------hhhHHHHHHHHHHHHHhcCCHHHHHHHHHHhc
Q 002318 371 YLDMKEYAAALANCRD----------PLQRDQVYLVQAEAAFATKDFHRAASFYAKIN 418 (936)
Q Consensus 371 ll~~~~f~~Al~~~~~----------~~~~~~I~~~~~~~L~~~g~y~~Aa~~y~~~~ 418 (936)
+...|+|++|+++.+. +.....+....|..++..|+|++|...|.+..
T Consensus 113 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al 170 (383)
T 3ulq_A 113 ELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAY 170 (383)
T ss_dssp HHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 6777899999887542 33466888999999999999999999988875
No 283
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=85.27 E-value=6.7 Score=46.91 Aligned_cols=99 Identities=13% Similarity=0.081 Sum_probs=65.0
Q ss_pred ceeEEEEeCC--EEEEEecCCeEEEEeC-CCC--CceeeEcCCCCCCccceeEEEeCCCCCeEEEEeecCCCccEEEEec
Q 002318 23 VITCMSAGND--VIVLGTSKGWLIRHDF-GAG--DSYDIDLSAGRPGEQSIHKVFVDPGGSHCIATIVGSGGAETFYTHA 97 (936)
Q Consensus 23 ~i~~l~v~~n--~l~l~~~~g~l~ridl-~~~--~~~~~~l~~~~~~~~~i~~i~lDp~G~hlli~~~~~~~g~~~Y~~~ 97 (936)
.+.+++.+.+ .|+++.. +.|+++|+ ... .+..+.- ....+..+-..|.|.+++.+++ +..|.+..
T Consensus 110 ~v~~~~~SpDg~~l~~~~~-~~i~~~d~~~~~~~~~~~l~~-----~~~~~~~~~~SPDG~~la~~~~----~~i~~~d~ 179 (741)
T 2ecf_A 110 GIVDYQWSPDAQRLLFPLG-GELYLYDLKQEGKAAVRQLTH-----GEGFATDAKLSPKGGFVSFIRG----RNLWVIDL 179 (741)
T ss_dssp ESCCCEECTTSSEEEEEET-TEEEEEESSSCSTTSCCBCCC-----SSSCEEEEEECTTSSEEEEEET----TEEEEEET
T ss_pred CcceeEECCCCCEEEEEeC-CcEEEEECCCCCcceEEEccc-----CCcccccccCCCCCCEEEEEeC----CcEEEEec
Confidence 3677888755 6766665 89999999 431 3332211 1356889999999999888765 67777777
Q ss_pred CCCCceeccCCCCce----------------EEEEEecCCCCCCCCcceEEEEcCC
Q 002318 98 KWSKPRVLSKLKGLV----------------VNAVAWNRQQITEASTKEIILGTDT 137 (936)
Q Consensus 98 ~~~k~k~L~klkg~~----------------I~sVaw~~~~~~~~st~~iLiGt~~ 137 (936)
...+.+.+....+.. +.+++|+++ .+.|+.++.+
T Consensus 180 ~~g~~~~~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~SpD------g~~l~~~~~d 229 (741)
T 2ecf_A 180 ASGRQMQLTADGSTTIGNGIAEFVADEEMDRHTGYWWAPD------DSAIAYARID 229 (741)
T ss_dssp TTTEEEECCCCCCSSEEESCCCHHHHHHSCCCCSEEECTT------SSCEEEEEEE
T ss_pred CCCCEEEeccCCccceeccccceeeeeccccccceEECCC------CCEEEEEEEc
Confidence 666666655422222 478999953 2356666544
No 284
>1suu_A DNA gyrase subunit A; topoisomerase,DNA gyrase, beta-propeller, beta-pinwheel, ISO; HET: DNA; 1.75A {Borrelia burgdorferi} SCOP: b.68.10.1
Probab=85.21 E-value=34 Score=36.40 Aligned_cols=156 Identities=12% Similarity=0.132 Sum_probs=91.4
Q ss_pred EeCCEEEEEecCCeEEEEeC-CCCCce----ee-EcCCCCCCccceeEEEeCCCCCeEEEEeecCCCccEEEEecCC---
Q 002318 29 AGNDVIVLGTSKGWLIRHDF-GAGDSY----DI-DLSAGRPGEQSIHKVFVDPGGSHCIATIVGSGGAETFYTHAKW--- 99 (936)
Q Consensus 29 v~~n~l~l~~~~g~l~ridl-~~~~~~----~~-~l~~~~~~~~~i~~i~lDp~G~hlli~~~~~~~g~~~Y~~~~~--- 99 (936)
..+.++++.+++|.+-|..+ .-.... .+ -+..+ .++.+..++.-.+..++++.|+ .|..|.+....
T Consensus 6 ~~e~~~v~~T~~G~iKr~~~~~~~~~~~~~~g~~~~~lk--e~D~l~~~~~~~~~~~ll~~T~---~G~~~~~~~~~ip~ 80 (312)
T 1suu_A 6 QKENIVVMLTKKGFLKRLSQNEYKLQGTGGKGLSSFDLN--DGDEIVIALCVNTHDYLFMISN---EGKLYLINAYEIKD 80 (312)
T ss_dssp --CEEEEEEETTCBEEEEEGGGSCBCCSSCCCEECCCCC--TTCCEEEEEEEETTCEEEEEET---TSEEEEEEGGGSCC
T ss_pred CCCCEEEEEeCCCEEEEeEHHHhhccccCCCCceecccC--CCCEEEEEEEECCCCEEEEEEC---CCeEEEEEHHHCCC
Confidence 35678999999999999977 211110 11 11111 2356777777667778888888 89998887531
Q ss_pred ----CCcee---ccCC-CCceEEEEEecCCCCCCCCcceEEEEcCCCcEEEEEEecCC-cccceeeEEeeeCCCCCceee
Q 002318 100 ----SKPRV---LSKL-KGLVVNAVAWNRQQITEASTKEIILGTDTGQLHEMAVDEKD-KREKYIKLLFELNELPEAFMG 170 (936)
Q Consensus 100 ----~k~k~---L~kl-kg~~I~sVaw~~~~~~~~st~~iLiGt~~G~i~e~~i~~~~-~~~~~~k~v~~l~~~~~~I~g 170 (936)
.+-.+ +-++ .|-.|.++.--+.. .+...+|+.|++|.++-+.+..-. ...+. ....++.+ .+.+.+
T Consensus 81 ~~r~~~G~~i~~~l~l~~~e~i~~~~~~~~~---~~~~~ll~~T~~G~~kr~~l~~~~~~r~~G-~~~i~L~~-~d~lv~ 155 (312)
T 1suu_A 81 SSRASKGQNISELINLGDQEEILTIKNSKDL---TDDAYLLLTTASGKIARFESTDFKAVKSRG-VIVIKLND-KDFVTS 155 (312)
T ss_dssp -------CBGGGTSCCCTTCCEEEEEEESCC---CTTCEEEEEETTSEEEEEEGGGGCC----C-EECBCCCT-TCCEEE
T ss_pred CCccCCCcChhhccCCCCCCEEEEEEEeccC---CCCCEEEEEeCCCeEEEEEHHHhhccCCCc-EEEEecCC-CCEEEE
Confidence 11111 1122 34455555443221 123579999999999998874321 01112 22346665 356777
Q ss_pred EEEEeeccCCCceEEEEEECCCeEEEEec
Q 002318 171 LQMETASLSNGTRYYVMAVTPTRLYSFTG 199 (936)
Q Consensus 171 i~~~~~~~~~~~~~~i~ast~~rly~f~~ 199 (936)
+.... + ...++++|...+...|.-
T Consensus 156 ~~~~~----~-~~~i~l~T~~G~~~r~~~ 179 (312)
T 1suu_A 156 AEIVF----K-DEKVICLSKKGSAFIFNS 179 (312)
T ss_dssp EEEEC----T-TCEEEEEETTSEEEEEEG
T ss_pred EEEeC----C-CCEEEEEeCCCcEEEEEH
Confidence 76552 2 356888899999998854
No 285
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=85.20 E-value=9.4 Score=41.32 Aligned_cols=103 Identities=17% Similarity=0.181 Sum_probs=63.3
Q ss_pred eEEEEeCCEEEEEecCCeEEEEeC-CCCCceeeEcCCCCCCccceeEEEeCCCCCeEEEEeecCCCccEEEEecCCCCce
Q 002318 25 TCMSAGNDVIVLGTSKGWLIRHDF-GAGDSYDIDLSAGRPGEQSIHKVFVDPGGSHCIATIVGSGGAETFYTHAKWSKPR 103 (936)
Q Consensus 25 ~~l~v~~n~l~l~~~~g~l~ridl-~~~~~~~~~l~~~~~~~~~i~~i~lDp~G~hlli~~~~~~~g~~~Y~~~~~~k~k 103 (936)
...++.++.++++..+|.|+.+|. .+...-+.+.+ ....+.++ +.++++.+. +|..+.++...-+.+
T Consensus 233 ~~p~~~~~~v~~~~~~g~l~~~d~~tG~~~w~~~~~-------~~~~~~~~--~~~l~~~~~---~g~l~~~d~~tG~~~ 300 (376)
T 3q7m_A 233 TTPVVVNGVVFALAYNGNLTALDLRSGQIMWKRELG-------SVNDFIVD--GNRIYLVDQ---NDRVMALTIDGGVTL 300 (376)
T ss_dssp CCCEEETTEEEEECTTSCEEEEETTTCCEEEEECCC-------CEEEEEEE--TTEEEEEET---TCCEEEEETTTCCEE
T ss_pred CCcEEECCEEEEEecCcEEEEEECCCCcEEeeccCC-------CCCCceEE--CCEEEEEcC---CCeEEEEECCCCcEE
Confidence 445678999999999999999999 55544443332 12334443 667888877 788877776544322
Q ss_pred e-ccCCCCceEEEEEecCCCCCCCCcceEEEEcCCCcEEEEEEec
Q 002318 104 V-LSKLKGLVVNAVAWNRQQITEASTKEIILGTDTGQLHEMAVDE 147 (936)
Q Consensus 104 ~-L~klkg~~I~sVaw~~~~~~~~st~~iLiGt~~G~i~e~~i~~ 147 (936)
- ...+.+..+.+.+. ..+.+.+|+.+|.|+......
T Consensus 301 w~~~~~~~~~~~~~~~--------~~~~l~v~~~~g~l~~~d~~t 337 (376)
T 3q7m_A 301 WTQSDLLHRLLTSPVL--------YNGNLVVGDSEGYLHWINVED 337 (376)
T ss_dssp EEECTTTTSCCCCCEE--------ETTEEEEECTTSEEEEEETTT
T ss_pred EeecccCCCcccCCEE--------ECCEEEEEeCCCeEEEEECCC
Confidence 1 11111211222121 235899999999888776543
No 286
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens}
Probab=85.16 E-value=31 Score=37.84 Aligned_cols=155 Identities=13% Similarity=0.119 Sum_probs=90.8
Q ss_pred ceeEEEEeCCEEEEEecCCeEEEEeC-------CCCCceeeEcCC--CCCCccceeEEEeCCCCCeEEEEeecCCCccEE
Q 002318 23 VITCMSAGNDVIVLGTSKGWLIRHDF-------GAGDSYDIDLSA--GRPGEQSIHKVFVDPGGSHCIATIVGSGGAETF 93 (936)
Q Consensus 23 ~i~~l~v~~n~l~l~~~~g~l~ridl-------~~~~~~~~~l~~--~~~~~~~i~~i~lDp~G~hlli~~~~~~~g~~~ 93 (936)
.|..+++..+..++.+.+|.||-|=. .++.. ....|. ......+|..|..-....|.++.++ +|.+|
T Consensus 160 ~i~~va~G~~hs~alt~~G~v~~wG~n~~GqLG~~~~~-~~~~p~~v~~~~~~~v~~ia~G~g~~~t~~l~~---~G~v~ 235 (389)
T 3kci_A 160 EVVDVAAGGAHSACVTAAGDLYTWGKGRYGRLGHSDSE-DQLKPKLVEALQGHRVVDIACGSGDAQTLCLTD---DDTVW 235 (389)
T ss_dssp CEEEEEECSSEEEEEETTSCEEEEECCGGGTTCSSSCC-CEEEEEECGGGTTSCEEEEEECCSSCEEEEEET---TTEEE
T ss_pred eEEEEEeCcCeEEEEeCCCeEEEeCCCCCCCcCCCCCc-ccccceEecccCCCeEEEEEEcCCCcEEEEEcc---CCEEE
Confidence 68999999999999999999999943 11211 111121 1112356777776433478888887 89998
Q ss_pred EEecCC------------CCceeccCCCCceEEEEEecCCCCCCCCcceEEEEcCCCcEEEEEEecC-----Cccc--ce
Q 002318 94 YTHAKW------------SKPRVLSKLKGLVVNAVAWNRQQITEASTKEIILGTDTGQLHEMAVDEK-----DKRE--KY 154 (936)
Q Consensus 94 Y~~~~~------------~k~k~L~klkg~~I~sVaw~~~~~~~~st~~iLiGt~~G~i~e~~i~~~-----~~~~--~~ 154 (936)
-+..+. ..+..+..+.+..|..|+-... ..+.+ |++|.||-.--+.. ...+ ..
T Consensus 236 ~wG~n~~GqLG~g~~~~~~~p~~v~~~~~~~v~~v~~G~~-------hs~al-t~~G~v~~wG~n~~GqLG~g~~~~~~~ 307 (389)
T 3kci_A 236 SWGDGDYGKLGRGGSDGCKVPMKIDSLTGLGVVKVECGSQ-------FSVAL-TKSGAVYTWGKGDYHRLGHGSDDHVRR 307 (389)
T ss_dssp EEECCGGGTTSSSSCCCEEEEEECGGGTTSCEEEEEEETT-------EEEEE-ETTSCEEEEECCGGGTTCSSSCCCEEE
T ss_pred EEeCCCCCCCCCCCCCCccccEEecccCCCcEEEEeCCCC-------EEEEE-eCCCeEEEEeCCCCCCCCCCCCccccC
Confidence 776432 1345566667777888887621 13333 88999987654321 0111 11
Q ss_pred eeEEeeeCCCCCceeeEEEEeeccCCCceEEEEEECCCeEEEEe
Q 002318 155 IKLLFELNELPEAFMGLQMETASLSNGTRYYVMAVTPTRLYSFT 198 (936)
Q Consensus 155 ~k~v~~l~~~~~~I~gi~~~~~~~~~~~~~~i~ast~~rly~f~ 198 (936)
.+.+-.+.+ .+|..|.. +. ...+.++...++|.|-
T Consensus 308 P~~v~~l~~--~~v~~ia~------G~-~h~~al~~~G~v~~wG 342 (389)
T 3kci_A 308 PRQVQGLQG--KKVIAIAT------GS-LHCVCCTEDGEVYTWG 342 (389)
T ss_dssp EEECGGGTT--CCEEEEEE------CS-SEEEEEETTCCEEEEE
T ss_pred CeEeccCCC--CCEEEEEe------cc-CeEEEECCCCCEEEee
Confidence 122212222 23554443 22 3445557788999884
No 287
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=85.08 E-value=8.6 Score=41.02 Aligned_cols=106 Identities=10% Similarity=0.041 Sum_probs=65.6
Q ss_pred eeEEEEeCCEEEEEec--CCeEEEEeC-CCCCceeeEcCCCCCCccceeEEEeCCCCCeEEEEeecCCC----------c
Q 002318 24 ITCMSAGNDVIVLGTS--KGWLIRHDF-GAGDSYDIDLSAGRPGEQSIHKVFVDPGGSHCIATIVGSGG----------A 90 (936)
Q Consensus 24 i~~l~v~~n~l~l~~~--~g~l~ridl-~~~~~~~~~l~~~~~~~~~i~~i~lDp~G~hlli~~~~~~~----------g 90 (936)
..++++.++.+|++.. ++.|.+||+ ....+..+++. ...+.+.+||.|...+++.. + +
T Consensus 133 p~~i~~~~~~lyv~~~~~~~~v~viD~~t~~~~~~i~~g------~~p~~i~~~~dG~l~v~~~~---~~~~~~~~~~~~ 203 (328)
T 3dsm_A 133 TEQMVQYGKYVYVNCWSYQNRILKIDTETDKVVDELTIG------IQPTSLVMDKYNKMWTITDG---GYEGSPYGYEAP 203 (328)
T ss_dssp CCCEEEETTEEEEEECTTCCEEEEEETTTTEEEEEEECS------SCBCCCEECTTSEEEEEBCC---BCTTCSSCBCCC
T ss_pred cceEEEECCEEEEEcCCCCCEEEEEECCCCeEEEEEEcC------CCccceEEcCCCCEEEEECC---CccCCccccCCc
Confidence 4677889999999973 789999999 44444555553 23467899999985544443 2 4
Q ss_pred cEEEEecCCCCce-eccCCCCceEEEEEecCCCCCCCCcceEEEEcCCCcEEEEEEe
Q 002318 91 ETFYTHAKWSKPR-VLSKLKGLVVNAVAWNRQQITEASTKEIILGTDTGQLHEMAVD 146 (936)
Q Consensus 91 ~~~Y~~~~~~k~k-~L~klkg~~I~sVaw~~~~~~~~st~~iLiGt~~G~i~e~~i~ 146 (936)
..+-++....++. .+.--.|.....++|+++ .+.+.+... .|+.....
T Consensus 204 ~v~~id~~t~~v~~~~~~~~g~~p~~la~~~d------~~~lyv~~~--~v~~~d~~ 252 (328)
T 3dsm_A 204 SLYRIDAETFTVEKQFKFKLGDWPSEVQLNGT------RDTLYWINN--DIWRMPVE 252 (328)
T ss_dssp EEEEEETTTTEEEEEEECCTTCCCEEEEECTT------SCEEEEESS--SEEEEETT
T ss_pred eEEEEECCCCeEEEEEecCCCCCceeEEEecC------CCEEEEEcc--EEEEEECC
Confidence 5666776554433 221102446788999842 124444433 67755443
No 288
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=84.89 E-value=40 Score=35.15 Aligned_cols=160 Identities=12% Similarity=0.141 Sum_probs=86.1
Q ss_pred CceeEEEEe-CCEEEEEecC-----CeEEEEeCCCCCceeeEcCCCCCCccceeEEEeCCCCCeEEEEeecC----CCcc
Q 002318 22 GVITCMSAG-NDVIVLGTSK-----GWLIRHDFGAGDSYDIDLSAGRPGEQSIHKVFVDPGGSHCIATIVGS----GGAE 91 (936)
Q Consensus 22 ~~i~~l~v~-~n~l~l~~~~-----g~l~ridl~~~~~~~~~l~~~~~~~~~i~~i~lDp~G~hlli~~~~~----~~g~ 91 (936)
..+.++++. ++.++++... +.|+++|........+-... .....+..+.+||.|. +++++... .++.
T Consensus 87 ~~~~~i~~~~dg~l~v~~~~~~~~~~~i~~~d~~~~~~~~~~~~~--~~~~~~~~i~~d~~g~-l~v~~~~~~~~~~~~~ 163 (333)
T 2dg1_A 87 ANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDNLQDIIEDL--STAYCIDDMVFDSKGG-FYFTDFRGYSTNPLGG 163 (333)
T ss_dssp SSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCSCEEEECSS--SSCCCEEEEEECTTSC-EEEEECCCBTTBCCEE
T ss_pred CCcceEEECCCCcEEEEeCCCCCCCceEEEEeCCCCEEEEEEccC--ccCCcccceEECCCCC-EEEEeccccccCCCce
Confidence 568899986 4467777655 48999999434333221111 1135789999999996 45544300 1255
Q ss_pred EEEEecCCCCceeccCCCCceEEEEEecCCCCCCCCcceEEEE-cCCCcEEEEEEecCCccccee--eEEeeeCCCCCce
Q 002318 92 TFYTHAKWSKPRVLSKLKGLVVNAVAWNRQQITEASTKEIILG-TDTGQLHEMAVDEKDKREKYI--KLLFELNELPEAF 168 (936)
Q Consensus 92 ~~Y~~~~~~k~k~L~klkg~~I~sVaw~~~~~~~~st~~iLiG-t~~G~i~e~~i~~~~~~~~~~--k~v~~l~~~~~~I 168 (936)
.|.++....+.+.+.. ....+.+++|+++ .+.+.++ +.++.|+.+.+.........+ .....++. ...+
T Consensus 164 l~~~~~~~~~~~~~~~-~~~~~~~i~~~~d------g~~l~v~~~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~-~~~~ 235 (333)
T 2dg1_A 164 VYYVSPDFRTVTPIIQ-NISVANGIALSTD------EKVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTG-HEGP 235 (333)
T ss_dssp EEEECTTSCCEEEEEE-EESSEEEEEECTT------SSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCS-SSEE
T ss_pred EEEEeCCCCEEEEeec-CCCcccceEECCC------CCEEEEEeCCCCeEEEEEecCCCcCcccccceEEEecCC-CCCC
Confidence 6666654444444422 1124788999842 1235455 456888888774321111111 11123332 1246
Q ss_pred eeEEEEeeccCCCceEEEEEEC--CCeEEEEec
Q 002318 169 MGLQMETASLSNGTRYYVMAVT--PTRLYSFTG 199 (936)
Q Consensus 169 ~gi~~~~~~~~~~~~~~i~ast--~~rly~f~~ 199 (936)
.+|.+.. +.+ +|+++ ..+++.|..
T Consensus 236 ~~i~~d~-----~G~--l~v~~~~~~~v~~~d~ 261 (333)
T 2dg1_A 236 DSCCIDS-----DDN--LYVAMYGQGRVLVFNK 261 (333)
T ss_dssp EEEEEBT-----TCC--EEEEEETTTEEEEECT
T ss_pred CceEECC-----CCC--EEEEEcCCCEEEEECC
Confidence 7777752 112 33343 567887753
No 289
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=84.77 E-value=2.8 Score=50.62 Aligned_cols=49 Identities=12% Similarity=0.040 Sum_probs=39.1
Q ss_pred HHHchhhHHHHHHhcCChh----hHHHHHHHHHHHHHhcCCHHHHHHHHHHhc
Q 002318 370 VYLDMKEYAAALANCRDPL----QRDQVYLVQAEAAFATKDFHRAASFYAKIN 418 (936)
Q Consensus 370 ~ll~~~~f~~Al~~~~~~~----~~~~I~~~~~~~L~~~g~y~~Aa~~y~~~~ 418 (936)
+|.++|+|++|+++.+... .-...+...|.-|...|+|++|...|.+..
T Consensus 18 ~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al 70 (723)
T 4gyw_A 18 IKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAI 70 (723)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4788999999998876422 224677788999999999999999998875
No 290
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=84.64 E-value=8.4 Score=41.50 Aligned_cols=42 Identities=10% Similarity=0.065 Sum_probs=33.0
Q ss_pred HHHHHHhcCC----------hhhHHHHHHHHHHHHHhcCCHHHHHHHHHHhc
Q 002318 377 YAAALANCRD----------PLQRDQVYLVQAEAAFATKDFHRAASFYAKIN 418 (936)
Q Consensus 377 f~~Al~~~~~----------~~~~~~I~~~~~~~L~~~g~y~~Aa~~y~~~~ 418 (936)
|++|+++.+. +.....+....|..++..|+|++|...|.+..
T Consensus 163 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 214 (406)
T 3sf4_A 163 LQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRL 214 (406)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 8888877542 23345678888999999999999999988765
No 291
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=84.31 E-value=2 Score=48.85 Aligned_cols=197 Identities=9% Similarity=0.023 Sum_probs=101.0
Q ss_pred HHHHchhhHHHHHHhcCC-----hhhHHHHHHHHHHHHHhcCCHHHHHHHHHHhc--CC---CChHHHHHHhcCcChHHH
Q 002318 369 KVYLDMKEYAAALANCRD-----PLQRDQVYLVQAEAAFATKDFHRAASFYAKIN--YI---LSFEEITLKFISVSEQDA 438 (936)
Q Consensus 369 ~~ll~~~~f~~Al~~~~~-----~~~~~~I~~~~~~~L~~~g~y~~Aa~~y~~~~--~~---~~~E~v~lkFl~~~~~~~ 438 (936)
..+...|++++|++..+. |. ..+....|..++..|+|++|...|.+.. +. ..+-....-+...++.+.
T Consensus 251 ~~~~~~~~~~~A~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 328 (537)
T 3fp2_A 251 IFHFLKNNLLDAQVLLQESINLHPT--PNSYIFLALTLADKENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYFILQDYKN 328 (537)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCCC--HHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHhcccHHHHHHHHHHHHhcCCC--chHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHH
Confidence 347777888888888653 33 5667778888888888888888887764 11 112223333445566555
Q ss_pred HHHHHHHHhhcccCchhHHHHHHHHHHHHHHHHHHhhhhcccchhhccchHHHHHHHHHHHHHHhcccccCC-HHHHHHH
Q 002318 439 LRTFLLRKLDNLAKDDKCQITMISTWATELYLDKINRLLLEDDTALENRSSEYQSIMREFRAFLSDCKDVLD-EATTMKL 517 (936)
Q Consensus 439 L~~YL~~~l~~l~~~~~~~~~lL~~Wl~ely~~~l~~~~~e~~~~~~~~~~~~~~~~~~l~~fl~~~~~~ld-~~tv~~l 517 (936)
-..++..-+..-+.+... ...+..+|.. ... +.+...-+++.+....+..+ ....-.+
T Consensus 329 A~~~~~~a~~~~~~~~~~-----~~~la~~~~~-~g~---------------~~~A~~~~~~~~~~~~~~~~~~~~l~~~ 387 (537)
T 3fp2_A 329 AKEDFQKAQSLNPENVYP-----YIQLACLLYK-QGK---------------FTESEAFFNETKLKFPTLPEVPTFFAEI 387 (537)
T ss_dssp HHHHHHHHHHHCTTCSHH-----HHHHHHHHHH-TTC---------------HHHHHHHHHHHHHHCTTCTHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCHHH-----HHHHHHHHHH-cCC---------------HHHHHHHHHHHHHhCCCChHHHHHHHHH
Confidence 555555544433322211 1122333321 111 11112223333322211100 1123456
Q ss_pred HHHcCChhHHHHHHHhhhh--------------HHHHHHHHHhc----------ccHHHHHHHHhCC----CCchhhHHh
Q 002318 518 LESYGRVEELVFFASLKEQ--------------HEIVVHHYIQQ----------GEAKKALQMLRKP----AVPIDLQYK 569 (936)
Q Consensus 518 l~~~g~~e~~l~~a~~~~d--------------y~~ll~~yi~~----------~~~~~AL~~L~~~----~d~~~li~k 569 (936)
+...|+.++++.+.+..-. +-.....|... |+|++|+..+.+. ++.....+.
T Consensus 388 ~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~ 467 (537)
T 3fp2_A 388 LTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIG 467 (537)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HHHhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCCCCHHHHHH
Confidence 6666777776665554211 11223455555 8888888877642 232345555
Q ss_pred hHHHHHh-HChHHHHHHHHc
Q 002318 570 FAPDLIM-LDAYETVESWMT 588 (936)
Q Consensus 570 ~~~~Ll~-~~p~~ti~ll~~ 588 (936)
.+..+.. .+.+++++.+-+
T Consensus 468 l~~~~~~~g~~~~A~~~~~~ 487 (537)
T 3fp2_A 468 LAQLKLQMEKIDEAIELFED 487 (537)
T ss_dssp HHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHhccHHHHHHHHHH
Confidence 5555543 466677777644
No 292
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=84.02 E-value=27 Score=38.61 Aligned_cols=110 Identities=7% Similarity=-0.022 Sum_probs=67.2
Q ss_pred ceeEEEEe-CCEEEEEe-cCCeEEEEeCCCCCceeeEcCCCCCCccceeEEEeCCCCCeEEEEeecCCCc--cEEEEecC
Q 002318 23 VITCMSAG-NDVIVLGT-SKGWLIRHDFGAGDSYDIDLSAGRPGEQSIHKVFVDPGGSHCIATIVGSGGA--ETFYTHAK 98 (936)
Q Consensus 23 ~i~~l~v~-~n~l~l~~-~~g~l~ridl~~~~~~~~~l~~~~~~~~~i~~i~lDp~G~hlli~~~~~~~g--~~~Y~~~~ 98 (936)
....|++. ++.||++- .++.|.+||+....+..+.-. ..... +.+||.|.+++++.. ++ ..+.+...
T Consensus 132 ~P~~la~d~~g~lyv~d~~~~~I~~id~~~g~~~~~~~~-----~~~~~-ia~~~~g~~l~~~d~---~~~~~I~~~d~~ 202 (409)
T 3hrp_A 132 YMWGIAAVGNNTVLAYQRDDPRVRLISVDDNKVTTVHPG-----FKGGK-PAVTKDKQRVYSIGW---EGTHTVYVYMKA 202 (409)
T ss_dssp CEEEEEECSTTEEEEEETTTTEEEEEETTTTEEEEEEET-----CCBCB-CEECTTSSEEEEEBS---STTCEEEEEEGG
T ss_pred CceEEEEeCCCCEEEEecCCCcEEEEECCCCEEEEeecc-----CCCCc-eeEecCCCcEEEEec---CCCceEEEEEcC
Confidence 45788885 44566665 458999999954445444322 12334 889999998888765 34 56656543
Q ss_pred CCC-ceec---cCCCCceEEEEEecCCCCCCCCcceEEEEcCCCcEEEEEEec
Q 002318 99 WSK-PRVL---SKLKGLVVNAVAWNRQQITEASTKEIILGTDTGQLHEMAVDE 147 (936)
Q Consensus 99 ~~k-~k~L---~klkg~~I~sVaw~~~~~~~~st~~iLiGt~~G~i~e~~i~~ 147 (936)
... .+.+ ....+....++++++. .+.+.+...+|.|+.+..+.
T Consensus 203 ~~~~~~~~g~~~~~~~~~p~~iav~p~------~g~lyv~d~~~~I~~~d~~~ 249 (409)
T 3hrp_A 203 SGWAPTRIGQLGSTFSGKIGAVALDET------EEWLYFVDSNKNFGRFNVKT 249 (409)
T ss_dssp GTTCEEEEEECCTTSCSCCCBCEECTT------SSEEEEECTTCEEEEEETTT
T ss_pred CCceeEEeeeccchhcCCcEEEEEeCC------CCeEEEEECCCcEEEEECCC
Confidence 322 2233 0102345677888732 45788877778888776543
No 293
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=83.99 E-value=10 Score=41.18 Aligned_cols=49 Identities=16% Similarity=0.155 Sum_probs=37.9
Q ss_pred HHHchhhHHHHHHhcCC-----------hhhHHHHHHHHHHHHHhcCCHHHHHHHHHHhc
Q 002318 370 VYLDMKEYAAALANCRD-----------PLQRDQVYLVQAEAAFATKDFHRAASFYAKIN 418 (936)
Q Consensus 370 ~ll~~~~f~~Al~~~~~-----------~~~~~~I~~~~~~~L~~~g~y~~Aa~~y~~~~ 418 (936)
.+...|+|++|+.+.+. +.....+....|..++..|+|++|...|.+..
T Consensus 150 ~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al 209 (378)
T 3q15_A 150 AYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAAL 209 (378)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 47778888888877642 12345677788999999999999999988765
No 294
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*
Probab=82.93 E-value=0.46 Score=52.26 Aligned_cols=33 Identities=24% Similarity=0.552 Sum_probs=25.8
Q ss_pred cccccccchhhhhcccccccccccCCCCCCCCEEEEcCCChhHHHhHHHHHh
Q 002318 833 DEDCGVCRRKILVAGRDYRMARGYASVGPMAPFYVFPCGHAFHAQCLIAHVT 884 (936)
Q Consensus 833 ~~~C~~C~k~L~~~~~~~~~~~~~~~~~~~~~fvvFpCgH~fH~~CL~~~~~ 884 (936)
...|.+|-.... ..++.||||.||..|+.....
T Consensus 332 ~~~C~ICle~~~-------------------~pv~lpCGH~FC~~Ci~~wl~ 364 (389)
T 2y1n_A 332 FQLCKICAENDK-------------------DVKIEPCGHLMCTSCLTSWQE 364 (389)
T ss_dssp SSBCTTTSSSBC-------------------CEEEETTCCEECHHHHHHHHH
T ss_pred CCCCCccCcCCC-------------------CeEEeCCCChhhHHHHHHHHh
Confidence 468999975543 346789999999999987654
No 295
>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...
Probab=82.65 E-value=61 Score=41.21 Aligned_cols=198 Identities=12% Similarity=0.098 Sum_probs=104.5
Q ss_pred CceeEEEEeCCEEEEEecCCeEEEEeCCCCCce---eeEcCCCCCCccceeEEEeCCC------CCeEEEEeecCCCccE
Q 002318 22 GVITCMSAGNDVIVLGTSKGWLIRHDFGAGDSY---DIDLSAGRPGEQSIHKVFVDPG------GSHCIATIVGSGGAET 92 (936)
Q Consensus 22 ~~i~~l~v~~n~l~l~~~~g~l~ridl~~~~~~---~~~l~~~~~~~~~i~~i~lDp~------G~hlli~~~~~~~g~~ 92 (936)
..|++.++.++++++++ +|.|+.+.++..+.. +.+++ ..|..+.+.|. +..++|.+.. ++..
T Consensus 514 ~~I~~As~n~~~vvva~-g~~l~~fel~~~~L~~~~~~~l~------~evscl~i~~~~~~~~~s~~~aVg~~~--d~tv 584 (1158)
T 3ei3_A 514 KNISVASCNSSQVVVAV-GRALYYLQIHPQELRQISHTEME------HEVACLDITPLGDSNGLSPLCAIGLWT--DISA 584 (1158)
T ss_dssp CCCCEEEECSSEEEEEE-TTEEEEEEEETTEEEEEEEEECS------SCEEEEECCCCSSSTTCCSEEEEEETT--TTEE
T ss_pred CEEEEEEeCCCEEEEEE-CCEEEEEEeeCCceeeecccCCC------CceEEEEeecCCCCcccccEEEEEECC--CCEE
Confidence 36999999999999995 788888777322332 33333 46788888654 4678887631 4555
Q ss_pred EEEecCCCCceeccCCCC-ceEEEEEecCCCCCCCCcceEEEEcCCCcEEEEEEecCCcccceeeEEeeeCCCCCceeeE
Q 002318 93 FYTHAKWSKPRVLSKLKG-LVVNAVAWNRQQITEASTKEIILGTDTGQLHEMAVDEKDKREKYIKLLFELNELPEAFMGL 171 (936)
Q Consensus 93 ~Y~~~~~~k~k~L~klkg-~~I~sVaw~~~~~~~~st~~iLiGt~~G~i~e~~i~~~~~~~~~~k~v~~l~~~~~~I~gi 171 (936)
.-+....-.......+.+ ...+||..... .+.--+++|..+|.++.+.++...+.-...|.. .++. .|+.
T Consensus 585 ~I~sL~~l~~~~~~~L~~~~~p~si~l~~~----~~~~~L~igl~dG~l~~~~~d~~tg~l~d~r~~-~LG~--~pv~-- 655 (1158)
T 3ei3_A 585 RILKLPSFELLHKEMLGGEIIPRSILMTTF----ESSHYLLCALGDGALFYFGLNIETGLLSDRKKV-TLGT--QPTV-- 655 (1158)
T ss_dssp EEEETTTCCEEEEEECCSSCCEEEEEEEEE----TTEEEEEEEETTSEEEEEEECTTTCCEEEEEEE-ECCS--SCCE--
T ss_pred EEEECCCCCeEEEEECCCCCCCcEEEEEEe----CCCcEEEEEeCCCeEEEEEEcCCCCccccceeE-EcCC--CceE--
Confidence 544443322222222211 34566655521 123467889999999999887543222223333 3553 3343
Q ss_pred EEEeeccCCCceEEEEEEC--CCeEEEEecCCchHHHHhhhhcccccccccCCCcCCCcceeeeccCCCceEEEeecCce
Q 002318 172 QMETASLSNGTRYYVMAVT--PTRLYSFTGFGSLDTVFASYLDRAVHFMELPGEILNSELHFFIKQRRAVHFAWLSGAGI 249 (936)
Q Consensus 172 ~~~~~~~~~~~~~~i~ast--~~rly~f~~~~~l~~~f~~~~~~~~~~~el~~~~~~s~~~~~~~~~~~~~faW~t~~gi 249 (936)
+..++..+ +..|+|++ |..+|.-.| .+ .+..+.... -.-..-+....+|..|+-.++.++
T Consensus 656 -L~~~~~~~--~~~V~a~s~rp~liy~~~~--~l------------~~s~l~~~~-v~~~~~F~se~~~~g~v~~~~~~L 717 (1158)
T 3ei3_A 656 -LRTFRSLS--TTNVFACSDRPTVIYSSNH--KL------------VFSNVNLKE-VNYMCPLNSDGYPDSLALANNSTL 717 (1158)
T ss_dssp -EEEEESSS--CEEEEEESSSCEEEEESSS--SE------------EEEEBSSSC-CCEEEEECCSSSTTEEEEECSSCE
T ss_pred -EEEEeeCC--ceeEEEECCCCEEEEEcCC--ce------------EEeccChHH-hceEeccCcccCCCcEEEEcCCce
Confidence 33333223 34566665 444542111 11 111111110 000111222345777887888888
Q ss_pred EEEEec
Q 002318 250 YHGGLN 255 (936)
Q Consensus 250 ~~g~i~ 255 (936)
-+|.++
T Consensus 718 rI~~i~ 723 (1158)
T 3ei3_A 718 TIGTID 723 (1158)
T ss_dssp EEEEEC
T ss_pred EEEEec
Confidence 888775
No 296
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=82.64 E-value=9.3 Score=40.09 Aligned_cols=146 Identities=8% Similarity=0.029 Sum_probs=75.2
Q ss_pred eeEEEEe-CCEEEE-----Eec-------------CCeEEEEeCCCCCceeeEcCCCCCCccceeEEEeCCCCCeEEEEe
Q 002318 24 ITCMSAG-NDVIVL-----GTS-------------KGWLIRHDFGAGDSYDIDLSAGRPGEQSIHKVFVDPGGSHCIATI 84 (936)
Q Consensus 24 i~~l~v~-~n~l~l-----~~~-------------~g~l~ridl~~~~~~~~~l~~~~~~~~~i~~i~lDp~G~hlli~~ 84 (936)
+.++++. ++-+|+ |+. .+.|+++|.....+..+. . ....+.+.++|.|..+.++.
T Consensus 133 ~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~~~-~-----~~~p~gl~~spdg~~lyv~~ 206 (305)
T 3dr2_A 133 PNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQRMA-D-----LDHPNGLAFSPDEQTLYVSQ 206 (305)
T ss_dssp CCCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCEEEE-E-----ESSEEEEEECTTSSEEEEEE
T ss_pred CCCEEECCCCCEEEeCcCCCccccccccccccccCCCeEEEEcCCCCcEEEEe-c-----CCCCcceEEcCCCCEEEEEe
Confidence 4456666 446777 442 468999998323343332 2 13457788999999888876
Q ss_pred ecC---CCccEEEEecCCCC---ceeccCCCCceEEEEEecCCCCCCCCcceEEEEcCCCcEEEEEEecCCcccceeeEE
Q 002318 85 VGS---GGAETFYTHAKWSK---PRVLSKLKGLVVNAVAWNRQQITEASTKEIILGTDTGQLHEMAVDEKDKREKYIKLL 158 (936)
Q Consensus 85 ~~~---~~g~~~Y~~~~~~k---~k~L~klkg~~I~sVaw~~~~~~~~st~~iLiGt~~G~i~e~~i~~~~~~~~~~k~v 158 (936)
... +++..+-+...... .+.+.....-....++++ ..|.+.+++.+| |+.+..+. +.+. .
T Consensus 207 ~~~~~~~~~~i~~~~~~~~~l~~~~~~~~~~~~~pdgi~~d-------~~G~lwv~~~~g-v~~~~~~g-----~~~~-~ 272 (305)
T 3dr2_A 207 TPEQGHGSVEITAFAWRDGALHDRRHFASVPDGLPDGFCVD-------RGGWLWSSSGTG-VCVFDSDG-----QLLG-H 272 (305)
T ss_dssp CCC---CCCEEEEEEEETTEEEEEEEEECCSSSCCCSEEEC-------TTSCEEECCSSE-EEEECTTS-----CEEE-E
T ss_pred cCCcCCCCCEEEEEEecCCCccCCeEEEECCCCCCCeEEEC-------CCCCEEEecCCc-EEEECCCC-----CEEE-E
Confidence 510 00334333322111 111111111122345555 235788888666 55543221 1222 3
Q ss_pred eeeCCCCCceeeEEEEeeccCCCceEEEEEECCCeEEEEe
Q 002318 159 FELNELPEAFMGLQMETASLSNGTRYYVMAVTPTRLYSFT 198 (936)
Q Consensus 159 ~~l~~~~~~I~gi~~~~~~~~~~~~~~i~ast~~rly~f~ 198 (936)
+.+++ .+.++.+. + + +-.+|++|...||.+.
T Consensus 273 ~~~~~---~~~~~~f~--~---d-~~~L~it~~~~l~~~~ 303 (305)
T 3dr2_A 273 IPTPG---TASNCTFD--Q---A-QQRLFITGGPCLWMLP 303 (305)
T ss_dssp EECSS---CCCEEEEC--T---T-SCEEEEEETTEEEEEE
T ss_pred EECCC---ceeEEEEe--C---C-CCEEEEEcCCeEEEEE
Confidence 45553 36777775 2 1 2245556668898763
No 297
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=81.99 E-value=10 Score=41.09 Aligned_cols=48 Identities=23% Similarity=0.304 Sum_probs=38.5
Q ss_pred HHchhhHHHHHHhcCC----------hhhHHHHHHHHHHHHHhcCCHHHHHHHHHHhc
Q 002318 371 YLDMKEYAAALANCRD----------PLQRDQVYLVQAEAAFATKDFHRAASFYAKIN 418 (936)
Q Consensus 371 ll~~~~f~~Al~~~~~----------~~~~~~I~~~~~~~L~~~g~y~~Aa~~y~~~~ 418 (936)
+...|+|++|+.+.+. +.....+....|..++..|+|++|...|.+..
T Consensus 111 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al 168 (378)
T 3q15_A 111 EFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQAL 168 (378)
T ss_dssp HHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHH
Confidence 5677888888887542 33466788899999999999999999888765
No 298
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=81.94 E-value=33 Score=33.66 Aligned_cols=156 Identities=10% Similarity=0.007 Sum_probs=76.3
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHhcCCC-----ChHHHHHHhcCcChHHHHHHHHHHHhhcccCchhHHHHHHHHHHH
Q 002318 392 QVYLVQAEAAFATKDFHRAASFYAKINYIL-----SFEEITLKFISVSEQDALRTFLLRKLDNLAKDDKCQITMISTWAT 466 (936)
Q Consensus 392 ~I~~~~~~~L~~~g~y~~Aa~~y~~~~~~~-----~~E~v~lkFl~~~~~~~L~~YL~~~l~~l~~~~~~~~~lL~~Wl~ 466 (936)
......|..++..|+|++|...|.+..... .+-....-+...++.+.-..++.+-+..-+.+.... ..+.
T Consensus 6 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~-----~~lg 80 (217)
T 2pl2_A 6 QNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVARTPRYLGGY-----MVLS 80 (217)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH-----HHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHH-----HHHH
Confidence 355678899999999999999999875211 122233334455666555555555444333332221 1222
Q ss_pred HHHHHHHhhhhcccchhhccchHHHHHHHHHHHHHHhcccccCCHHH---HHHHHHHcCChhHHHHHHHhh-------hh
Q 002318 467 ELYLDKINRLLLEDDTALENRSSEYQSIMREFRAFLSDCKDVLDEAT---TMKLLESYGRVEELVFFASLK-------EQ 536 (936)
Q Consensus 467 ely~~~l~~~~~e~~~~~~~~~~~~~~~~~~l~~fl~~~~~~ld~~t---v~~ll~~~g~~e~~l~~a~~~-------~d 536 (936)
.+|....... +. .. ....++.+....+++-+....+ +... .-.++...|+.++++...+.. .-
T Consensus 81 ~~~~~~~~~~--~~-~~--~~~g~~~~A~~~~~~al~~~P~--~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~ 153 (217)
T 2pl2_A 81 EAYVALYRQA--ED-RE--RGKGYLEQALSVLKDAERVNPR--YAPLHLQRGLVYALLGERDKAEASLKQALALEDTPEI 153 (217)
T ss_dssp HHHHHHHHTC--SS-HH--HHHHHHHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHH
T ss_pred HHHHHhhhhh--hh-hc--ccccCHHHHHHHHHHHHHhCcc--cHHHHHHHHHHHHHcCChHHHHHHHHHHHhcccchHH
Confidence 2332210000 00 00 0001222333444444443221 1221 223455667777776655542 11
Q ss_pred HHHHHHHHHhcccHHHHHHHHhC
Q 002318 537 HEIVVHHYIQQGEAKKALQMLRK 559 (936)
Q Consensus 537 y~~ll~~yi~~~~~~~AL~~L~~ 559 (936)
+..+...|...|++++|+..+.+
T Consensus 154 ~~~la~~~~~~g~~~~A~~~~~~ 176 (217)
T 2pl2_A 154 RSALAELYLSMGRLDEALAQYAK 176 (217)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHH
Confidence 33445567777777777777654
No 299
>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A
Probab=81.87 E-value=58 Score=36.25 Aligned_cols=130 Identities=12% Similarity=0.100 Sum_probs=76.9
Q ss_pred CCcceehhHHHHHhhcCCCceeEEEEeCCEEEEEecCCeEEEE-eCCCCC-ceeeEcCCCCCCccceeEEEeCCCCCeEE
Q 002318 4 MRQVFQVDVLERYAAKGRGVITCMSAGNDVIVLGTSKGWLIRH-DFGAGD-SYDIDLSAGRPGEQSIHKVFVDPGGSHCI 81 (936)
Q Consensus 4 ~~~~f~~~~~~~~~~~~~~~i~~l~v~~n~l~l~~~~g~l~ri-dl~~~~-~~~~~l~~~~~~~~~i~~i~lDp~G~hll 81 (936)
+-|||.-..+... .+.-..++-.+.-++++.. ..+|+ ++.|+. -.-..+|.. ..-..|.++-+.|+|.+|.
T Consensus 9 ~~pif~~~~~~~~----s~R~~~~~~n~t~i~~a~~--n~iR~~~i~~~~~Yk~L~~~~~-i~f~~i~qlvlSpsG~lLA 81 (452)
T 3pbp_A 9 ALPIFQASLSASQ----SPRYIFSSQNGTRIVFIQD--NIIRWYNVLTDSLYHSLNFSRH-LVLDDTFHVISSTSGDLLC 81 (452)
T ss_dssp CCTTTCC----------CCEEEEEETTTTEEEEEET--TEEEEEETTTCSSCEEEECTTT-CCCCTTCEEEECTTSSEEE
T ss_pred eeeecccccccCC----CCcEEEEEcCCCEEEEEEC--CEEEEEECCCCCcceEEecCcc-cccCceeEEEECCCCCEEE
Confidence 5689976655552 2343445555556666655 46676 775443 333445420 1124689999999999999
Q ss_pred EEeecCCCccEEEEecCCCC-------------c--eeccCCC---CceEEEEEecCCCCCCCCcceEEEEcCCCcEEEE
Q 002318 82 ATIVGSGGAETFYTHAKWSK-------------P--RVLSKLK---GLVVNAVAWNRQQITEASTKEIILGTDTGQLHEM 143 (936)
Q Consensus 82 i~~~~~~~g~~~Y~~~~~~k-------------~--k~L~klk---g~~I~sVaw~~~~~~~~st~~iLiGt~~G~i~e~ 143 (936)
+.+. ..+..+...+.. + ..+.... .-.|+.|-|+|-.. ....+++=|+++.|..+
T Consensus 82 l~g~----~~V~Vv~LP~~~~~~~~~~~~~~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~---~ds~LVVLtsD~~Ir~y 154 (452)
T 3pbp_A 82 LFND----NEIFVMEVPWGYSNVEDVSIQDAFQIFHYSIDEEEVGPKSSIKKVLFHPKSY---RDSCIVVLKEDDTITMF 154 (452)
T ss_dssp EECS----SEEEEEECCTTCSCCCCHHHHHTTEEEEEEGGGCC--CCCCEEEEEECTTBG---GGCEEEEEETTSCEEEE
T ss_pred EecC----CeEEEEEecCccccCcccccccccceeEEEcCCcccCCCCceeEEEeccccC---CCCeEEEEecCCEEEEE
Confidence 9876 555555433211 1 1233222 24699999995432 23478888999999999
Q ss_pred EEec
Q 002318 144 AVDE 147 (936)
Q Consensus 144 ~i~~ 147 (936)
.+..
T Consensus 155 Dl~~ 158 (452)
T 3pbp_A 155 DILN 158 (452)
T ss_dssp ETTC
T ss_pred Eccc
Confidence 9875
No 300
>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A
Probab=81.38 E-value=0.31 Score=40.31 Aligned_cols=31 Identities=29% Similarity=0.679 Sum_probs=23.8
Q ss_pred cccccccchhhhhcccccccccccCCCCCCCCEEEEcCCCh-hHHHhHHHH
Q 002318 833 DEDCGVCRRKILVAGRDYRMARGYASVGPMAPFYVFPCGHA-FHAQCLIAH 882 (936)
Q Consensus 833 ~~~C~~C~k~L~~~~~~~~~~~~~~~~~~~~~fvvFpCgH~-fH~~CL~~~ 882 (936)
...|.+|...+.. .+..||||. |+..|+...
T Consensus 24 ~~~C~iC~~~~~~-------------------~~~~pCgH~~~C~~C~~~~ 55 (74)
T 4ic3_A 24 EKLCKICMDRNIA-------------------IVFVPCGHLVTCKQCAEAV 55 (74)
T ss_dssp HTBCTTTSSSBCC-------------------EEEETTCCBCCCHHHHTTC
T ss_pred CCCCCCCCCCCCC-------------------EEEcCCCChhHHHHhhhcC
Confidence 4579999865433 456699999 999998653
No 301
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=81.37 E-value=14 Score=36.66 Aligned_cols=33 Identities=9% Similarity=-0.009 Sum_probs=27.4
Q ss_pred ChhhHHHHHHHHHHHHHhcCCHHHHHHHHHHhc
Q 002318 386 DPLQRDQVYLVQAEAAFATKDFHRAASFYAKIN 418 (936)
Q Consensus 386 ~~~~~~~I~~~~~~~L~~~g~y~~Aa~~y~~~~ 418 (936)
+|.....+....|..++..|+|++|...|.+..
T Consensus 32 ~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al 64 (252)
T 2ho1_A 32 GRDEARDAYIQLGLGYLQRGNTEQAKVPLRKAL 64 (252)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCTGGGHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHcCChHHHHHHHHHHH
Confidence 355556778888999999999999999998764
No 302
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=81.01 E-value=28 Score=37.20 Aligned_cols=81 Identities=12% Similarity=0.153 Sum_probs=51.1
Q ss_pred CCEEEEEec-CC--eEEEEeCCCCCceeeEcCCCCCCccceeEEEeCCCCCeEEEEeecCCCccEEEEecCCCCceeccC
Q 002318 31 NDVIVLGTS-KG--WLIRHDFGAGDSYDIDLSAGRPGEQSIHKVFVDPGGSHCIATIVGSGGAETFYTHAKWSKPRVLSK 107 (936)
Q Consensus 31 ~n~l~l~~~-~g--~l~ridl~~~~~~~~~l~~~~~~~~~i~~i~lDp~G~hlli~~~~~~~g~~~Y~~~~~~k~k~L~k 107 (936)
++.|+++.. +| .|+++|+...+.. .+.. .....+......|.|.+++.... ++..|-++....+.+.+..
T Consensus 47 g~~l~~~~~~~g~~~l~~~d~~~g~~~--~lt~--~~~~~~~~~~~spdg~~l~~~~~---~~~l~~~d~~~g~~~~~~~ 119 (388)
T 3pe7_A 47 GSKLLFGGAFDGPWNYYLLDLNTQVAT--QLTE--GRGDNTFGGFLSPDDDALFYVKD---GRNLMRVDLATLEENVVYQ 119 (388)
T ss_dssp SCEEEEEECTTSSCEEEEEETTTCEEE--ECCC--SSCBCSSSCEECTTSSEEEEEET---TTEEEEEETTTCCEEEEEE
T ss_pred CCEEEEEEcCCCCceEEEEeCCCCceE--Eeee--CCCCCccceEEcCCCCEEEEEeC---CCeEEEEECCCCcceeeee
Confidence 456666665 56 5999999333222 2221 11223334678999999999887 6777777777766666665
Q ss_pred CCCceEEEEEe
Q 002318 108 LKGLVVNAVAW 118 (936)
Q Consensus 108 lkg~~I~sVaw 118 (936)
..+..+...+|
T Consensus 120 ~~~~~~~~~~~ 130 (388)
T 3pe7_A 120 VPAEWVGYGTW 130 (388)
T ss_dssp CCTTEEEEEEE
T ss_pred chhhcccccce
Confidence 55556666666
No 303
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=80.94 E-value=2.6 Score=38.20 Aligned_cols=50 Identities=16% Similarity=0.239 Sum_probs=39.5
Q ss_pred HHHHchhhHHHHHHhcCCh----hhHHHHHHHHHHHHHhcCCHHHHHHHHHHhc
Q 002318 369 KVYLDMKEYAAALANCRDP----LQRDQVYLVQAEAAFATKDFHRAASFYAKIN 418 (936)
Q Consensus 369 ~~ll~~~~f~~Al~~~~~~----~~~~~I~~~~~~~L~~~g~y~~Aa~~y~~~~ 418 (936)
..|+++|+|++|++..+.. ..-..+....|.-++..|+|++|...|.+..
T Consensus 21 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al 74 (126)
T 4gco_A 21 NEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCI 74 (126)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHH
Confidence 3588999999999886532 1234677788999999999999999998875
No 304
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=80.80 E-value=20 Score=37.16 Aligned_cols=98 Identities=7% Similarity=0.022 Sum_probs=61.4
Q ss_pred CCEEEEEecCCeEEEEeC-CCCCceeeEcCCCCCCccceeEEEeCCCCCeEEEEeecCCCccEEEEecCCCCceeccCCC
Q 002318 31 NDVIVLGTSKGWLIRHDF-GAGDSYDIDLSAGRPGEQSIHKVFVDPGGSHCIATIVGSGGAETFYTHAKWSKPRVLSKLK 109 (936)
Q Consensus 31 ~n~l~l~~~~g~l~ridl-~~~~~~~~~l~~~~~~~~~i~~i~lDp~G~hlli~~~~~~~g~~~Y~~~~~~k~k~L~klk 109 (936)
+++++.+-.++.|+.+|. .+..+-++..+. ...++.++++|.|+. +++. ++.++-++..-.....+.--.
T Consensus 5 ~~~lv~~~~~~~v~~~d~~tG~~~w~~~~~~----~~~~~~~~~~pdG~i-lvs~----~~~V~~~d~~G~~~W~~~~~~ 75 (276)
T 3no2_A 5 QHLLVGGSGWNKIAIINKDTKEIVWEYPLEK----GWECNSVAATKAGEI-LFSY----SKGAKMITRDGRELWNIAAPA 75 (276)
T ss_dssp CEEEEECTTCSEEEEEETTTTEEEEEEECCT----TCCCCEEEECTTSCE-EEEC----BSEEEEECTTSCEEEEEECCT
T ss_pred CcEEEeeCCCCEEEEEECCCCeEEEEeCCCc----cCCCcCeEECCCCCE-EEeC----CCCEEEECCCCCEEEEEcCCC
Confidence 467788888999999999 777777776652 135789999999974 4443 355555554222122222112
Q ss_pred CceEEEEEecCCCCCCCCcceEEEE-cC-CCcEEEEE
Q 002318 110 GLVVNAVAWNRQQITEASTKEIILG-TD-TGQLHEMA 144 (936)
Q Consensus 110 g~~I~sVaw~~~~~~~~st~~iLiG-t~-~G~i~e~~ 144 (936)
+..+.++++.+ .+.+|++ +. ++.|++..
T Consensus 76 ~~~~~~~~~~~-------dG~~lv~~~~~~~~v~~vd 105 (276)
T 3no2_A 76 GCEMQTARILP-------DGNALVAWCGHPSTILEVN 105 (276)
T ss_dssp TCEEEEEEECT-------TSCEEEEEESTTEEEEEEC
T ss_pred CccccccEECC-------CCCEEEEecCCCCEEEEEe
Confidence 35788888873 2356665 44 67776653
No 305
>4d9s_A UVB-resistance protein UVR8; UV resistance, UV-B photoreceptor, tryptophan chromophores, homodimer, COP1, chromatin-binding protein; 1.70A {Arabidopsis thaliana} PDB: 4dnw_A 4dnu_A 4dnv_A
Probab=80.65 E-value=71 Score=35.07 Aligned_cols=157 Identities=15% Similarity=0.125 Sum_probs=89.5
Q ss_pred CCCceeEEEEeCCEEEEEecCCeEEEEeC-C-----CCCceeeEcCC--CCCCccceeEEEeCCCCCeEEEEeecCCCc-
Q 002318 20 GRGVITCMSAGNDVIVLGTSKGWLIRHDF-G-----AGDSYDIDLSA--GRPGEQSIHKVFVDPGGSHCIATIVGSGGA- 90 (936)
Q Consensus 20 ~~~~i~~l~v~~n~l~l~~~~g~l~ridl-~-----~~~~~~~~l~~--~~~~~~~i~~i~lDp~G~hlli~~~~~~~g- 90 (936)
.+..|..+++..+..++.+.+|.|+-|=- . .........|. ......+|..|.. .+.|.++.++ +|
T Consensus 14 ~~~~v~~ia~G~~hs~al~~~g~v~~wG~n~~GqLG~g~~~~~~~P~~v~~l~~~~i~~va~--G~~ht~al~~---~gg 88 (406)
T 4d9s_A 14 PPRKVLIISAGASHSVALLSGDIVCSWGRGEDGQLGHGDAEDRPSPTQLSALDGHQIVSVTC--GADHTVAYSQ---SGM 88 (406)
T ss_dssp -CCCEEEEEECSSEEEEEETTTEEEEEECCTTSTTCSSSCCCEEEEEECGGGTTSCEEEEEE--CSSEEEEEET---TTT
T ss_pred CccceEEEecCCCeEEEEEeCCEEEEEeCCCCCCCCCCCcccCcCCEEecccCCCCEEEEEe--CcceEEEEEC---CCC
Confidence 34579999999999999999999999932 1 11111112221 1112346766665 4678776555 44
Q ss_pred cEEEEecCC------------CCceeccCCCCceEEEEEecCCCCCCCCcceEEEEcCCCcEEEEEEecC------Cccc
Q 002318 91 ETFYTHAKW------------SKPRVLSKLKGLVVNAVAWNRQQITEASTKEIILGTDTGQLHEMAVDEK------DKRE 152 (936)
Q Consensus 91 ~~~Y~~~~~------------~k~k~L~klkg~~I~sVaw~~~~~~~~st~~iLiGt~~G~i~e~~i~~~------~~~~ 152 (936)
++|-+..+. ..+.++..+.+..|+.|+-... ..++=|++|.||-.--+.. +...
T Consensus 89 ~v~~wG~n~~GqLG~g~~~~~~~p~~v~~l~~~~i~~ia~G~~--------h~~alt~~G~v~~wG~n~~GqLG~g~~~~ 160 (406)
T 4d9s_A 89 EVYSWGWGDFGRLGHGNSSDLFTPLPIKALHGIRIKQIACGDS--------HCLAVTMEGEVQSWGRNQNGQLGLGDTED 160 (406)
T ss_dssp EEEEEECCGGGTTCSSSCCCEEEEEECGGGTTCCEEEEEECSS--------EEEEEETTSCEEEEECCTTSTTCSSSCCC
T ss_pred EEEEEcCCCCcCCCCCCCCccccceEecccCCCCEEEEEEChh--------heEEEcCCCcEEEeCCCCCccCCCCCCCC
Confidence 887665321 1355666677888999887621 3445588999987654322 0111
Q ss_pred ce-eeEEeeeCCCCCceeeEEEEeeccCCCceEEEEEECCCeEEEEe
Q 002318 153 KY-IKLLFELNELPEAFMGLQMETASLSNGTRYYVMAVTPTRLYSFT 198 (936)
Q Consensus 153 ~~-~k~v~~l~~~~~~I~gi~~~~~~~~~~~~~~i~ast~~rly~f~ 198 (936)
.. .+.+-.+.+ .+|..|..- ....+.++...++|.|-
T Consensus 161 ~~~p~~v~~~~~--~~i~~va~G-------~~hs~alt~~G~v~~wG 198 (406)
T 4d9s_A 161 SLVPQKIQAFEG--IRIKMVAAG-------AEHTAAVTEDGDLYGWG 198 (406)
T ss_dssp EEEEEECGGGTT--CCEEEEEEC-------SSEEEEEETTSCEEEEE
T ss_pred cccceEecccCC--CcEEEEecC-------CCeEEEEeCCCCEEEee
Confidence 11 111111221 234444331 24566668889999994
No 306
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=80.32 E-value=12 Score=42.31 Aligned_cols=49 Identities=10% Similarity=0.042 Sum_probs=37.7
Q ss_pred HHHchhhH-HHHHHhcCCh----hhHHHHHHHHHHHHHhcCCHHHHHHHHHHhc
Q 002318 370 VYLDMKEY-AAALANCRDP----LQRDQVYLVQAEAAFATKDFHRAASFYAKIN 418 (936)
Q Consensus 370 ~ll~~~~f-~~Al~~~~~~----~~~~~I~~~~~~~L~~~g~y~~Aa~~y~~~~ 418 (936)
.++..|+| ++|+++.+.. .....+....|.-++..|+|++|.+.|.+..
T Consensus 111 ~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al 164 (474)
T 4abn_A 111 ALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSGAL 164 (474)
T ss_dssp HHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 36677889 8888886532 1224577788889999999999999998876
No 307
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=80.28 E-value=17 Score=43.14 Aligned_cols=78 Identities=12% Similarity=0.159 Sum_probs=52.0
Q ss_pred eeEEEEeCC--EEEEEecC---------CeEEEEeCCCCCceeeEcCCCCCCccceeEEEeCCCCCeEEEEeecCCCccE
Q 002318 24 ITCMSAGND--VIVLGTSK---------GWLIRHDFGAGDSYDIDLSAGRPGEQSIHKVFVDPGGSHCIATIVGSGGAET 92 (936)
Q Consensus 24 i~~l~v~~n--~l~l~~~~---------g~l~ridl~~~~~~~~~l~~~~~~~~~i~~i~lDp~G~hlli~~~~~~~g~~ 92 (936)
+.+++++.+ .|+.+... +.|+++|+...+...+... ......+..+...|.|+.++..++ +..
T Consensus 63 v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~--~~~~~~~~~~~~SPdG~~la~~~~----~~i 136 (723)
T 1xfd_A 63 AIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGDPQSLDPP--EVSNAKLQYAGWGPKGQQLIFIFE----NNI 136 (723)
T ss_dssp CSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCCCEECCCT--TCCSCCCSBCCBCSSTTCEEEEET----TEE
T ss_pred cceEEECCCCCEEEEEecCccceeecceeeEEEEECCCCceEeccCC--ccccccccccEECCCCCEEEEEEC----CeE
Confidence 788888855 67777653 7899999933333323221 111234778889999999888775 778
Q ss_pred EEEecCCCCceeccC
Q 002318 93 FYTHAKWSKPRVLSK 107 (936)
Q Consensus 93 ~Y~~~~~~k~k~L~k 107 (936)
|.++....+.+.+..
T Consensus 137 ~~~~~~~g~~~~~~~ 151 (723)
T 1xfd_A 137 YYCAHVGKQAIRVVS 151 (723)
T ss_dssp EEESSSSSCCEEEEC
T ss_pred EEEECCCCceEEEec
Confidence 777776666666654
No 308
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=80.09 E-value=1.6 Score=40.84 Aligned_cols=48 Identities=13% Similarity=0.157 Sum_probs=26.0
Q ss_pred HHchhhHHHHHHhcC----ChhhHHHHHHHHHHHHHhcCCHHHHHHHHHHhc
Q 002318 371 YLDMKEYAAALANCR----DPLQRDQVYLVQAEAAFATKDFHRAASFYAKIN 418 (936)
Q Consensus 371 ll~~~~f~~Al~~~~----~~~~~~~I~~~~~~~L~~~g~y~~Aa~~y~~~~ 418 (936)
+..+|++++|++..+ .+.+....+...|.-++..|+|++|.+.|.+..
T Consensus 7 ~~~~~~~e~ai~~~~~a~~~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al 58 (150)
T 4ga2_A 7 RRSKADVERYIASVQGSTPSPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYI 58 (150)
T ss_dssp CCCHHHHHHHHHHHHHHSCSHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHcChHHHHHHHHHHhcccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 345566666665533 123344444555666666666666666666543
No 309
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=80.06 E-value=16 Score=35.86 Aligned_cols=49 Identities=20% Similarity=0.193 Sum_probs=37.8
Q ss_pred HHHchhhHHHHHHhcCC-----hhhHHHHHHHHHHHHHhcCCHHHHHHHHHHhc
Q 002318 370 VYLDMKEYAAALANCRD-----PLQRDQVYLVQAEAAFATKDFHRAASFYAKIN 418 (936)
Q Consensus 370 ~ll~~~~f~~Al~~~~~-----~~~~~~I~~~~~~~L~~~g~y~~Aa~~y~~~~ 418 (936)
.++..|+|++|++..+. |..-..+....|.-++..|+|++|...|.+..
T Consensus 16 ~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al 69 (228)
T 4i17_A 16 DALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAI 69 (228)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHH
Confidence 47888999999988652 21223556668999999999999999998875
No 310
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=79.74 E-value=29 Score=34.62 Aligned_cols=50 Identities=16% Similarity=0.053 Sum_probs=39.9
Q ss_pred HHHHchhhHHHHHHhcCC------------hhhHHHHHHHHHHHHHhcCCHHHHHHHHHHhc
Q 002318 369 KVYLDMKEYAAALANCRD------------PLQRDQVYLVQAEAAFATKDFHRAASFYAKIN 418 (936)
Q Consensus 369 ~~ll~~~~f~~Al~~~~~------------~~~~~~I~~~~~~~L~~~g~y~~Aa~~y~~~~ 418 (936)
..+...|+|++|+++.+. +.....+....|..++..|+|++|...|.+..
T Consensus 51 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 112 (283)
T 3edt_B 51 LVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRAL 112 (283)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred HHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 357778999999888653 13345788889999999999999999988875
No 311
>1zvt_A Topoisomerase IV subunit A; beta-pinwheel, ATPase, supercoiling, decatenation, DNA bindi topology; 1.70A {Escherichia coli}
Probab=79.42 E-value=35 Score=35.14 Aligned_cols=150 Identities=12% Similarity=0.168 Sum_probs=89.9
Q ss_pred CCEEEEEecCCeEEEEeC-CCCCceeeEcCCCCCCccceeEEEeCCCCCeEEEEeecCCCccEEEEecCC-----CCcee
Q 002318 31 NDVIVLGTSKGWLIRHDF-GAGDSYDIDLSAGRPGEQSIHKVFVDPGGSHCIATIVGSGGAETFYTHAKW-----SKPRV 104 (936)
Q Consensus 31 ~n~l~l~~~~g~l~ridl-~~~~~~~~~l~~~~~~~~~i~~i~lDp~G~hlli~~~~~~~g~~~Y~~~~~-----~k~k~ 104 (936)
+.+.++.+++|.|-|..+ ... ...+.+. .++.+..++.-.+..++++.|+ .|..|.+.... .+-++
T Consensus 2 E~v~v~lT~~G~iKr~~~~~~~-~~~~~lk----e~D~l~~~~~~~t~~~ll~~T~---~Gr~~~~~~~elp~~r~~G~~ 73 (256)
T 1zvt_A 2 EPVTIVLSQMGWVRSAKGHDID-APGLNYK----AGDSFKAAVKGKSNQPVVFVDS---TGRSYAIDPITLPSARGQGEP 73 (256)
T ss_dssp CEEEEEEETTSEEEEEESSCCC-STTSCCC----TTCCEEEEEEEETTSCEEEEET---TSEEEEECGGGSCCSSSCCEE
T ss_pred CCEEEEEeCCCEEEEeeCCcCC-ceeccCC----CCCEEEEEEEeCCCCEEEEEeC---CCeEEEEEHHHCCCcCCCCeE
Confidence 456788999999999988 322 1112221 2467777777666778888888 89998886422 23333
Q ss_pred cc---CC-CCceEEEEEecCCCCCCCCcceEEEEcCCCcEEEEEEecCCcccceeeEEeeeCCCCCceeeEEEEeeccCC
Q 002318 105 LS---KL-KGLVVNAVAWNRQQITEASTKEIILGTDTGQLHEMAVDEKDKREKYIKLLFELNELPEAFMGLQMETASLSN 180 (936)
Q Consensus 105 L~---kl-kg~~I~sVaw~~~~~~~~st~~iLiGt~~G~i~e~~i~~~~~~~~~~k~v~~l~~~~~~I~gi~~~~~~~~~ 180 (936)
+. +| .|-.|.++.-.+ ....+|+.|++|.+.-+.+..-...-+.=+.+..+.+. ..+.++.... .
T Consensus 74 i~~~i~L~~~e~Iv~~~~~~------~~~~lll~T~~G~~Kr~~~~e~~~~~r~G~~~i~L~~~-d~lv~~~~~~----~ 142 (256)
T 1zvt_A 74 LTGKLTLPPGATVDHMLMES------DDQKLLMASDAGYGFVCTFNDLVARNRAGKALITLPEN-AHVMPPVVIE----D 142 (256)
T ss_dssp GGGTCCCCTTCCEEEEECCC------TTCEEEEEBTTSEEEEEEGGGGCCCSTTCEECBCCCTT-CCBCCCEECC----C
T ss_pred eeeeecCCCCCEEEEEEEeC------CCCEEEEEeCCCeEEEeEHHHhcccCcCceEEEEECCC-CEEEEEEEec----C
Confidence 22 22 244566663321 12369999999999988874311111122344566542 3465554431 1
Q ss_pred CceEEEEEECCCeEEEEec
Q 002318 181 GTRYYVMAVTPTRLYSFTG 199 (936)
Q Consensus 181 ~~~~~i~ast~~rly~f~~ 199 (936)
+...++++|...++..|.-
T Consensus 143 ~~~~i~l~T~~G~~lrf~~ 161 (256)
T 1zvt_A 143 ASDMLLAITQAGRMLMFPV 161 (256)
T ss_dssp TTCEEEEEETTSEEEEEEG
T ss_pred CCCEEEEEcCCCeEEEEEH
Confidence 2246778898999998853
No 312
>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}
Probab=79.41 E-value=59 Score=33.40 Aligned_cols=154 Identities=11% Similarity=0.155 Sum_probs=87.7
Q ss_pred EEEE-eCCEEEEEe-cCCeEEEEeC-CCCC---ceeeEcCCC-CCCccceeEEEeCCCCCeEEEEeecCCCc-cEEEEec
Q 002318 26 CMSA-GNDVIVLGT-SKGWLIRHDF-GAGD---SYDIDLSAG-RPGEQSIHKVFVDPGGSHCIATIVGSGGA-ETFYTHA 97 (936)
Q Consensus 26 ~l~v-~~n~l~l~~-~~g~l~ridl-~~~~---~~~~~l~~~-~~~~~~i~~i~lDp~G~hlli~~~~~~~g-~~~Y~~~ 97 (936)
.+++ .++.++++- .++.|+++++ .... +..+.++.. .....-...|..||.|..++++... +. ..|-++.
T Consensus 74 GIa~~~~g~~~vs~E~~~~l~~~~v~~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~--~p~~i~~~~g 151 (255)
T 3qqz_A 74 TIEYIGDNQFVISDERDYAIYVISLTPNSEVKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEK--NPIEVYKVNG 151 (255)
T ss_dssp EEEECSTTEEEEEETTTTEEEEEEECTTCCEEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEES--SSEEEEEEES
T ss_pred HeEEeCCCEEEEEECCCCcEEEEEcCCCCeeeeeeeeccccccccccCCcceEEEeCCCCEEEEEECc--CCceEEEEcc
Confidence 4443 566776765 5578888887 3222 344544431 1122347899999999999998772 22 3333331
Q ss_pred --CCCCceec------cCCCCceEEEEEecCCCCCCCCcceEEEEcC-CCcEEEEEEecCCcccceeeEEeeeCCCC---
Q 002318 98 --KWSKPRVL------SKLKGLVVNAVAWNRQQITEASTKEIILGTD-TGQLHEMAVDEKDKREKYIKLLFELNELP--- 165 (936)
Q Consensus 98 --~~~k~k~L------~klkg~~I~sVaw~~~~~~~~st~~iLiGt~-~G~i~e~~i~~~~~~~~~~k~v~~l~~~~--- 165 (936)
.....+.+ ..+.-..+.++++++ .|+.+++=+. ...|+++...+. ++..+.|....
T Consensus 152 ~~~~~~l~i~~~~~~~~~~~~~d~S~l~~dp------~tg~lliLS~~s~~L~~~d~~g~------~~~~~~L~~g~~~l 219 (255)
T 3qqz_A 152 LLSSNELHISKDKALQRQFTLDDVSGAEFNQ------QKNTLLVLSHESRALQEVTLVGE------VIGEMSLTKGSRGL 219 (255)
T ss_dssp TTCSSCCEEEECHHHHHTCCSSCCCEEEEET------TTTEEEEEETTTTEEEEECTTCC------EEEEEECSTTGGGC
T ss_pred cccCCceeeecchhhccccccCCceeEEEcC------CCCeEEEEECCCCeEEEEcCCCC------EEEEEEcCCccCCc
Confidence 11111211 112224678999994 2456666544 466777754432 45556666310
Q ss_pred ----CceeeEEEEeeccCCCceEEEEEECCCeEEEEec
Q 002318 166 ----EAFMGLQMETASLSNGTRYYVMAVTPTRLYSFTG 199 (936)
Q Consensus 166 ----~~I~gi~~~~~~~~~~~~~~i~ast~~rly~f~~ 199 (936)
..-.||.+.. + +-+.+++-|..+|.|.-
T Consensus 220 ~~~~~qpEGia~d~-----~-G~lyIvsE~n~~y~f~~ 251 (255)
T 3qqz_A 220 SHNIKQAEGVAMDA-----S-GNIYIVSEPNRFYRFTP 251 (255)
T ss_dssp SSCCCSEEEEEECT-----T-CCEEEEETTTEEEEEEC
T ss_pred ccccCCCCeeEECC-----C-CCEEEEcCCceEEEEEe
Confidence 1347888873 2 23666688999998853
No 313
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=79.33 E-value=65 Score=33.72 Aligned_cols=117 Identities=11% Similarity=0.120 Sum_probs=67.0
Q ss_pred CceeEEEEeC--CEEEEEe-cCCeEEEEeCC-CCCceeeE-cCCC------CCCccceeEEEeCCCCCeEEEEeecCCCc
Q 002318 22 GVITCMSAGN--DVIVLGT-SKGWLIRHDFG-AGDSYDID-LSAG------RPGEQSIHKVFVDPGGSHCIATIVGSGGA 90 (936)
Q Consensus 22 ~~i~~l~v~~--n~l~l~~-~~g~l~ridl~-~~~~~~~~-l~~~------~~~~~~i~~i~lDp~G~hlli~~~~~~~g 90 (936)
....+++++. +.|+++- .+|.+..+|+. ......+. ++.. +.....++.+.++|.|. ++++.. +++
T Consensus 86 ~~p~~~a~spdg~~l~~~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~-l~v~~~--~~~ 162 (347)
T 3hfq_A 86 TPPAYVAVDEARQLVYSANYHKGTAEVMKIAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNR-LAVIDL--GSD 162 (347)
T ss_dssp CCCSEEEEETTTTEEEEEETTTTEEEEEEECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSC-EEEEET--TTT
T ss_pred CCCEEEEECCCCCEEEEEeCCCCEEEEEEeCCCCCeeecceeecCCCCCCccccCCCceEEEECCCCc-EEEEeC--CCC
Confidence 3467788875 4677776 67899999983 22332221 1111 01123588899999999 666543 145
Q ss_pred cEEEEecC-CCCceec---cCCCCceEEEEEecCCCCCCCCcceEEE-EcCCCcEEEEEEec
Q 002318 91 ETFYTHAK-WSKPRVL---SKLKGLVVNAVAWNRQQITEASTKEIIL-GTDTGQLHEMAVDE 147 (936)
Q Consensus 91 ~~~Y~~~~-~~k~k~L---~klkg~~I~sVaw~~~~~~~~st~~iLi-Gt~~G~i~e~~i~~ 147 (936)
..+.+... ..+...+ .-..|.....++|+++ .+.+++ +..++.|....++.
T Consensus 163 ~v~~~~~~~~g~~~~~~~~~~~~g~~p~~~~~spd------g~~l~v~~~~~~~v~v~~~~~ 218 (347)
T 3hfq_A 163 KVYVYNVSDAGQLSEQSVLTMEAGFGPRHLVFSPD------GQYAFLAGELSSQIASLKYDT 218 (347)
T ss_dssp EEEEEEECTTSCEEEEEEEECCTTCCEEEEEECTT------SSEEEEEETTTTEEEEEEEET
T ss_pred EEEEEEECCCCcEEEeeeEEcCCCCCCceEEECCC------CCEEEEEeCCCCEEEEEEecC
Confidence 55545443 2222222 1124556788999843 123444 45567777777764
No 314
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=79.16 E-value=10 Score=38.22 Aligned_cols=49 Identities=10% Similarity=0.118 Sum_probs=28.6
Q ss_pred HHHchhhHHHHHHhcCC-------hhhHHHHHHHHHHHHHhcCCHHHHHHHHHHhc
Q 002318 370 VYLDMKEYAAALANCRD-------PLQRDQVYLVQAEAAFATKDFHRAASFYAKIN 418 (936)
Q Consensus 370 ~ll~~~~f~~Al~~~~~-------~~~~~~I~~~~~~~L~~~g~y~~Aa~~y~~~~ 418 (936)
.++..|+|++|++.++. +..........|..+...|+|++|...|.+..
T Consensus 46 ~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a~ 101 (272)
T 3u4t_A 46 CYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKILMKKGQDSLAIQQYQAAV 101 (272)
T ss_dssp HHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 35566666666666431 11223445666666677777777776666653
No 315
>3no0_A DNA gyrase subunit A; DNA topology, topoisomerase, C-terminal DO gyrase, DNA binding protein, isomerase; HET: DNA GOL; 1.30A {Aquifex aeolicus}
Probab=78.83 E-value=66 Score=33.46 Aligned_cols=156 Identities=10% Similarity=0.075 Sum_probs=91.7
Q ss_pred CCceeEEEEe---CCEEEEEecCCeEEEEeC-CCC-C---ceeeEcCCCCCCccceeEEEeCCCCCeEEEEeecCCCccE
Q 002318 21 RGVITCMSAG---NDVIVLGTSKGWLIRHDF-GAG-D---SYDIDLSAGRPGEQSIHKVFVDPGGSHCIATIVGSGGAET 92 (936)
Q Consensus 21 ~~~i~~l~v~---~n~l~l~~~~g~l~ridl-~~~-~---~~~~~l~~~~~~~~~i~~i~lDp~G~hlli~~~~~~~g~~ 92 (936)
.+.|.++... +..+++++++|.+.|..+ .-. . +.-+.+. .++.+..+++-.+..++++.|+ +|..
T Consensus 67 ~e~i~~v~~~~~~~~~~v~~T~~G~iKr~~l~~~~~~~~G~~~i~lk----egD~l~~~~~~~~~~~ill~T~---~G~~ 139 (276)
T 3no0_A 67 EEKIVGAFIREKFGNRLLLATKKGYVKKIPLAEFEYKAQGMPIIKLT----EGDEVVSIASSVDETHILLFTK---KGRV 139 (276)
T ss_dssp TCCEEEEEEGGGSCSEEEEEETTSEEEEEEGGGTTTCSTTEECSCCC----TTCCEEEEEECCSSCEEEEEET---TSEE
T ss_pred CCEEEEEECCcCCCCEEEEEeCCCEEEEEEHHHhhhhcCCeEEEecC----CCCEEEEEEEeCCCCEEEEEEC---CCEE
Confidence 3556666543 468999999999999987 211 1 1112222 2357777777666778888888 8988
Q ss_pred EEEecCC-------CCceeccCCC-CceEEEEEecCCCCCCCCcceEEEEcCCCcEEEEEEecC---CcccceeeEEeee
Q 002318 93 FYTHAKW-------SKPRVLSKLK-GLVVNAVAWNRQQITEASTKEIILGTDTGQLHEMAVDEK---DKREKYIKLLFEL 161 (936)
Q Consensus 93 ~Y~~~~~-------~k~k~L~klk-g~~I~sVaw~~~~~~~~st~~iLiGt~~G~i~e~~i~~~---~~~~~~~k~v~~l 161 (936)
|-+.... .+-..+-+|+ |-.|.++.-.++ ...+++.|++|.+..+.+..- .+.-+.++.+
T Consensus 140 ~r~~~~eip~~gR~a~Gv~~i~L~~~d~vv~~~~~~~------~~~ll~~T~~G~~kr~~~~e~~~~~R~gkGv~~i--- 210 (276)
T 3no0_A 140 ARFSVREVPPSTPGARGVQGIKLEKNDETSGLRIWNG------EPYLLVITAKGRVKKISHEEIPKTNRGVKGTEVS--- 210 (276)
T ss_dssp EEEEGGGSCBCCTTCCCEECCCCCTTCCEEEEEEESS------CSEEEEEETTSCEEEEEGGGSCCCCTTCCCEECC---
T ss_pred EEEEhhhCCCcCCCCCCEEEEccCCCCEEEEEEEeCC------CCEEEEEeCCCcEEEeEHHHcccCCCCCcceEEE---
Confidence 8776422 1212222332 333444332211 248999999999988887532 1111223332
Q ss_pred CCCCCceeeEEEEeeccCCCceEEEEEECCCeEEE--Ee
Q 002318 162 NELPEAFMGLQMETASLSNGTRYYVMAVTPTRLYS--FT 198 (936)
Q Consensus 162 ~~~~~~I~gi~~~~~~~~~~~~~~i~ast~~rly~--f~ 198 (936)
. ..+++.++... ++...++++|...++.. |.
T Consensus 211 ~-~~~~lv~~~~~-----~~~~~i~~~t~~G~~ir~~~~ 243 (276)
T 3no0_A 211 G-TKDTLVDLIPI-----KEEVELLITTKNGKAFYDKIN 243 (276)
T ss_dssp C-SSSCEEEEEEE-----SSEEEEEEEETTSCEEEEEEE
T ss_pred c-CCCcEEEEEEe-----CCCCEEEEEcCCCeEEEeeeC
Confidence 2 23567766554 22356777788888887 74
No 316
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}
Probab=78.65 E-value=43 Score=35.12 Aligned_cols=96 Identities=7% Similarity=0.175 Sum_probs=60.0
Q ss_pred ceeEEEEeCCEEEEEec---------CCeEEEEeCCCCCceeeEcCCCCCCccceeEEEeCCCCCeEEEEeecC--CCcc
Q 002318 23 VITCMSAGNDVIVLGTS---------KGWLIRHDFGAGDSYDIDLSAGRPGEQSIHKVFVDPGGSHCIATIVGS--GGAE 91 (936)
Q Consensus 23 ~i~~l~v~~n~l~l~~~---------~g~l~ridl~~~~~~~~~l~~~~~~~~~i~~i~lDp~G~hlli~~~~~--~~g~ 91 (936)
.+...++.++.+++... .+.|+++|+...+...+ ..+..+...|.|.+++...... +...
T Consensus 16 ~~~~~~~dG~~i~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l---------~~~~~~~~SpDg~~la~~~~~~~~~~~~ 86 (347)
T 2gop_A 16 YLSDPRTKGELVAYVLTKANLKDNKYENTIVIENLKNNARRFI---------ENATMPRISPDGKKIAFMRANEEKKVSE 86 (347)
T ss_dssp EEEEEEEETTEEEEEEEEEETTTTEEEEEEEEEETTTCCEEEE---------ESCEEEEECTTSSEEEEEEEETTTTEEE
T ss_pred EcccceECCcEEEEEEeecCcccCCccceEEEEeCCCCceEEc---------ccCCCeEECCCCCEEEEEEeccCCCcce
Confidence 46677776667766542 46799999933333322 2467788999999988877621 1123
Q ss_pred EEEEecCCCCceeccCCCCceEEEEEecCCCCCCCCcceEEEEc
Q 002318 92 TFYTHAKWSKPRVLSKLKGLVVNAVAWNRQQITEASTKEIILGT 135 (936)
Q Consensus 92 ~~Y~~~~~~k~k~L~klkg~~I~sVaw~~~~~~~~st~~iLiGt 135 (936)
.|.+.....+.+.+....+ +.+++|.++ ...|+.+.
T Consensus 87 l~~~~~~~g~~~~l~~~~~--~~~~~wspd------g~~l~~~~ 122 (347)
T 2gop_A 87 IWVADLETLSSKKILEAKN--IRSLEWNED------SRKLLIVG 122 (347)
T ss_dssp EEEEETTTTEEEEEEEESE--EEEEEECTT------SSEEEEEE
T ss_pred EEEEECCCCceEEEEcCCC--ccceeECCC------CCEEEEEE
Confidence 4555555556666665443 999999843 23566664
No 317
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=78.64 E-value=32 Score=30.61 Aligned_cols=49 Identities=14% Similarity=0.175 Sum_probs=31.9
Q ss_pred HHHchhhHHHHHHhcCC----------hhhHHHHHHHHHHHHHhcCCHHHHHHHHHHhc
Q 002318 370 VYLDMKEYAAALANCRD----------PLQRDQVYLVQAEAAFATKDFHRAASFYAKIN 418 (936)
Q Consensus 370 ~ll~~~~f~~Al~~~~~----------~~~~~~I~~~~~~~L~~~g~y~~Aa~~y~~~~ 418 (936)
.+...|+|++|+.+.+. +.....+....|..++..|+|++|...|.+..
T Consensus 18 ~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~ 76 (164)
T 3ro3_A 18 THYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTL 76 (164)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 35666777777777542 11223466677777777888888877776654
No 318
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}
Probab=77.86 E-value=0.7 Score=39.32 Aligned_cols=37 Identities=11% Similarity=0.198 Sum_probs=28.9
Q ss_pred ecccccccccchhhhhcccccccccccCCCCCCCCEEEEcCCChhHHHhHHHHHhh
Q 002318 830 IDRDEDCGVCRRKILVAGRDYRMARGYASVGPMAPFYVFPCGHAFHAQCLIAHVTQ 885 (936)
Q Consensus 830 i~~~~~C~~C~k~L~~~~~~~~~~~~~~~~~~~~~fvvFpCgH~fH~~CL~~~~~~ 885 (936)
+...-.|.+|+..+.. | |+-+|||+|-..|+......
T Consensus 11 ~p~~~~CpI~~~~m~d------------------P-V~~~cGhtf~r~~I~~~l~~ 47 (85)
T 2kr4_A 11 APDEFRDPLMDTLMTD------------------P-VRLPSGTVMDRSIILRHLLN 47 (85)
T ss_dssp CCTTTBCTTTCSBCSS------------------E-EECTTSCEEEHHHHHHHHHH
T ss_pred CchheECcccCchhcC------------------C-eECCCCCEECHHHHHHHHhc
Confidence 3446789999977665 4 45689999999999998753
No 319
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=77.62 E-value=12 Score=40.44 Aligned_cols=105 Identities=6% Similarity=0.037 Sum_probs=62.1
Q ss_pred ceeEEEEeCCEEEEEecCCeEEEEeC-CCCCceeeEcCCCCCCccceeEEEeCCCCCeEEEEeecCCCccEEEEecCCCC
Q 002318 23 VITCMSAGNDVIVLGTSKGWLIRHDF-GAGDSYDIDLSAGRPGEQSIHKVFVDPGGSHCIATIVGSGGAETFYTHAKWSK 101 (936)
Q Consensus 23 ~i~~l~v~~n~l~l~~~~g~l~ridl-~~~~~~~~~l~~~~~~~~~i~~i~lDp~G~hlli~~~~~~~g~~~Y~~~~~~k 101 (936)
...++++.++.+++++.+|.|+.+|. .....-+.+.... ..+....+ .|.++++.+. +|..+.++...-+
T Consensus 269 ~~~~~~~~~~~l~~~~~~g~l~~~d~~tG~~~w~~~~~~~----~~~~~~~~--~~~~l~v~~~---~g~l~~~d~~tG~ 339 (376)
T 3q7m_A 269 SVNDFIVDGNRIYLVDQNDRVMALTIDGGVTLWTQSDLLH----RLLTSPVL--YNGNLVVGDS---EGYLHWINVEDGR 339 (376)
T ss_dssp CEEEEEEETTEEEEEETTCCEEEEETTTCCEEEEECTTTT----SCCCCCEE--ETTEEEEECT---TSEEEEEETTTCC
T ss_pred CCCCceEECCEEEEEcCCCeEEEEECCCCcEEEeecccCC----CcccCCEE--ECCEEEEEeC---CCeEEEEECCCCc
Confidence 35778999999999999999999999 5554433431111 11111122 2567888877 7888777765543
Q ss_pred ceeccCCCCceEEEEEecCCCCCCCCcceEEEEcCCCcEEEE
Q 002318 102 PRVLSKLKGLVVNAVAWNRQQITEASTKEIILGTDTGQLHEM 143 (936)
Q Consensus 102 ~k~L~klkg~~I~sVaw~~~~~~~~st~~iLiGt~~G~i~e~ 143 (936)
..--.++.+..+. ..+ ....+.+++||.+|.||.+
T Consensus 340 ~~~~~~~~~~~~~----~~~---~~~~~~l~v~~~~G~l~~~ 374 (376)
T 3q7m_A 340 FVAQQKVDSSGFQ----TEP---VAADGKLLIQAKDGTVYSI 374 (376)
T ss_dssp EEEEEECCTTCBC----SCC---EEETTEEEEEBTTSCEEEE
T ss_pred EEEEEecCCCcce----eCC---EEECCEEEEEeCCCEEEEE
Confidence 3221111111111 100 0123589999999998865
No 320
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}
Probab=77.50 E-value=0.69 Score=44.96 Aligned_cols=37 Identities=24% Similarity=0.713 Sum_probs=29.2
Q ss_pred ecccccccccchhhhhcccccccccccCCCCCCCCEEEEcCCChhHHHhHHHHHhh
Q 002318 830 IDRDEDCGVCRRKILVAGRDYRMARGYASVGPMAPFYVFPCGHAFHAQCLIAHVTQ 885 (936)
Q Consensus 830 i~~~~~C~~C~k~L~~~~~~~~~~~~~~~~~~~~~fvvFpCgH~fH~~CL~~~~~~ 885 (936)
+...-.|.+|...+.. |+ .-+|||.|...|+...+..
T Consensus 15 ~~~~~~C~IC~~~~~~------------------pv-~~~CgH~fC~~Ci~~~~~~ 51 (170)
T 3hcs_A 15 LESKYECPICLMALRE------------------AV-QTPCGHRFCKACIIKSIRD 51 (170)
T ss_dssp CCGGGBCTTTCSBCSS------------------EE-ECTTSCEEEHHHHHHHHHH
T ss_pred CCCCCCCCCCChhhcC------------------cE-ECCCCCHHHHHHHHHHHHh
Confidence 3455689999988766 54 4699999999999988753
No 321
>1zi0_A DNA gyrase subunit A; beta pinwheel, topoisomerase, spiralling beta pinwheel, DNA wrapping, isomerase, DNA bindng protein; HET: DNA; 2.60A {Escherichia coli}
Probab=77.48 E-value=76 Score=33.49 Aligned_cols=153 Identities=12% Similarity=0.196 Sum_probs=88.7
Q ss_pred CCEEEEEecCCeEEEEeC-CCCCc-------eeeEcCCCCCCccceeEEEeCCCCCeEEEEeecCCCccEEEEecCC---
Q 002318 31 NDVIVLGTSKGWLIRHDF-GAGDS-------YDIDLSAGRPGEQSIHKVFVDPGGSHCIATIVGSGGAETFYTHAKW--- 99 (936)
Q Consensus 31 ~n~l~l~~~~g~l~ridl-~~~~~-------~~~~l~~~~~~~~~i~~i~lDp~G~hlli~~~~~~~g~~~Y~~~~~--- 99 (936)
+.++++.+++|.|-|..+ .-... .-+.+. .++.+..++.-.+..++++-|+ .|..|.+....
T Consensus 3 e~~~v~~T~~G~iKr~~~~~~~~~~~~~~g~~~~~~k----e~D~l~~~~~~~~~~~ll~fT~---~G~~~~~~~~elp~ 75 (307)
T 1zi0_A 3 EDVVVTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIK----EEDFIDRLLVANTHDHILCFSS---RGRVYSMKVYQLPE 75 (307)
T ss_dssp CEEEEEEETTSEEEEEECC------------------------CCEEEEEEEETTCEEEEEET---TSEEEEEEGGGSCC
T ss_pred CcEEEEEeCCCEEEEeeHHHhhhhccCCCCceeeeeC----CCCEEEEEEEECCCCEEEEEEC---CCEEEEEEhhHCcC
Confidence 457899999999999988 21111 111111 2467777887777888999998 89999887411
Q ss_pred ----CCceecc---CC-CCceEEEEEecCCCCCCCCcceEEEEcCCCcEEEEEEecCCcccceeeEEeeeCCCCCceeeE
Q 002318 100 ----SKPRVLS---KL-KGLVVNAVAWNRQQITEASTKEIILGTDTGQLHEMAVDEKDKREKYIKLLFELNELPEAFMGL 171 (936)
Q Consensus 100 ----~k~k~L~---kl-kg~~I~sVaw~~~~~~~~st~~iLiGt~~G~i~e~~i~~~~~~~~~~k~v~~l~~~~~~I~gi 171 (936)
.+-.++. ++ .|-.|.++.--+.. . ....+++.|++|.+--+.+..-...-+.=...+++.+. ..+.++
T Consensus 76 ~~~~a~G~~i~~~l~l~~~e~i~~~~~~~~~-~--~~~~ll~~T~~G~~Krt~l~e~~~~~r~G~~~i~l~~~-d~lv~~ 151 (307)
T 1zi0_A 76 ATRGARGRPIVNLLPLEQDERITAILPVTEF-E--EGVKVFMATANGTVKKTVLTEFNRLRTAGKVAIKLVDG-DELIGV 151 (307)
T ss_dssp CCSSSCCEEGGGTSCCCTTCCEEEEEEESCC-C--TTCEEEEEETTSEEEEEEGGGGTTCCTTCEESSCCCTT-CCEEEE
T ss_pred CCCCCCCeEhhhccCCCCCCEEEEEEEeccC-C--CCcEEEEEeCCCeEEEEEHHHhhccccCCeEEEEECCC-CEEEEE
Confidence 2333222 22 34456665442111 1 12359999999999888774211100111233456543 456666
Q ss_pred EEEeeccCCCceEEEEEECCCeEEEEec
Q 002318 172 QMETASLSNGTRYYVMAVTPTRLYSFTG 199 (936)
Q Consensus 172 ~~~~~~~~~~~~~~i~ast~~rly~f~~ 199 (936)
.... + ...++++|...+++.|..
T Consensus 152 ~~~~----~-~~~i~l~T~~G~~irf~~ 174 (307)
T 1zi0_A 152 DLTS----G-EDEVMLFSAEGKVVRFKE 174 (307)
T ss_dssp EEEC----T-TCEEEEEETTSEEEEEEG
T ss_pred EEeC----C-CCEEEEECCCCcEEEEEH
Confidence 6542 2 346777899999998854
No 322
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=76.65 E-value=60 Score=34.20 Aligned_cols=152 Identities=8% Similarity=-0.020 Sum_probs=79.7
Q ss_pred ceeEEEE-eCCEEEEEe-cCCeEEEEeC-CCCCceeeEcCCCCCCccceeEEEeCCCCCeEEEEeecCCCccEEEEecCC
Q 002318 23 VITCMSA-GNDVIVLGT-SKGWLIRHDF-GAGDSYDIDLSAGRPGEQSIHKVFVDPGGSHCIATIVGSGGAETFYTHAKW 99 (936)
Q Consensus 23 ~i~~l~v-~~n~l~l~~-~~g~l~ridl-~~~~~~~~~l~~~~~~~~~i~~i~lDp~G~hlli~~~~~~~g~~~Y~~~~~ 99 (936)
....+++ .++.+|++. .+|.|.+||+ .......++++...........+.+ .|.+++++.. +.++..+.+....
T Consensus 85 ~p~~i~~~~~g~lyv~~~~~~~v~~iD~~t~~~~~~i~~g~~~~~~~~p~~i~~--~~~~lyv~~~-~~~~~v~viD~~t 161 (328)
T 3dsm_A 85 SPRYIHFLSDEKAYVTQIWDYRIFIINPKTYEITGYIECPDMDMESGSTEQMVQ--YGKYVYVNCW-SYQNRILKIDTET 161 (328)
T ss_dssp SEEEEEEEETTEEEEEEBSCSEEEEEETTTTEEEEEEECTTCCTTTCBCCCEEE--ETTEEEEEEC-TTCCEEEEEETTT
T ss_pred CCcEEEEeCCCeEEEEECCCCeEEEEECCCCeEEEEEEcCCccccCCCcceEEE--ECCEEEEEcC-CCCCEEEEEECCC
Confidence 4588888 788899888 7899999999 4433345665531110113455666 3667777752 0035565666544
Q ss_pred CCce-eccCCCCceEEEEEecCCCCCCCCcceEEEEcCC-----------CcEEEEEEecCCcccceeeEEeeeCCCCCc
Q 002318 100 SKPR-VLSKLKGLVVNAVAWNRQQITEASTKEIILGTDT-----------GQLHEMAVDEKDKREKYIKLLFELNELPEA 167 (936)
Q Consensus 100 ~k~k-~L~klkg~~I~sVaw~~~~~~~~st~~iLiGt~~-----------G~i~e~~i~~~~~~~~~~k~v~~l~~~~~~ 167 (936)
.+.. .+. -|.....+++++ .+.+++++.. +.|+....... .+...+.++.. ..
T Consensus 162 ~~~~~~i~--~g~~p~~i~~~~-------dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~-----~v~~~~~~~~g-~~ 226 (328)
T 3dsm_A 162 DKVVDELT--IGIQPTSLVMDK-------YNKMWTITDGGYEGSPYGYEAPSLYRIDAETF-----TVEKQFKFKLG-DW 226 (328)
T ss_dssp TEEEEEEE--CSSCBCCCEECT-------TSEEEEEBCCBCTTCSSCBCCCEEEEEETTTT-----EEEEEEECCTT-CC
T ss_pred CeEEEEEE--cCCCccceEEcC-------CCCEEEEECCCccCCccccCCceEEEEECCCC-----eEEEEEecCCC-CC
Confidence 3321 121 122234445542 2467777653 45665543221 12223355421 24
Q ss_pred eeeEEEEeeccCCCceEEEEEECCCeEEEEec
Q 002318 168 FMGLQMETASLSNGTRYYVMAVTPTRLYSFTG 199 (936)
Q Consensus 168 I~gi~~~~~~~~~~~~~~i~ast~~rly~f~~ 199 (936)
..++.+.. +.+.+.+ +.. .+|.|.-
T Consensus 227 p~~la~~~-----d~~~lyv-~~~-~v~~~d~ 251 (328)
T 3dsm_A 227 PSEVQLNG-----TRDTLYW-INN-DIWRMPV 251 (328)
T ss_dssp CEEEEECT-----TSCEEEE-ESS-SEEEEET
T ss_pred ceeEEEec-----CCCEEEE-Ecc-EEEEEEC
Confidence 67777752 2234444 333 6776653
No 323
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=76.27 E-value=55 Score=31.20 Aligned_cols=30 Identities=13% Similarity=0.083 Sum_probs=25.2
Q ss_pred hHHHHHHHHHHHHHhcCCHHHHHHHHHHhc
Q 002318 389 QRDQVYLVQAEAAFATKDFHRAASFYAKIN 418 (936)
Q Consensus 389 ~~~~I~~~~~~~L~~~g~y~~Aa~~y~~~~ 418 (936)
....+....|..++..|+|++|.+.|.+..
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 35 (225)
T 2vq2_A 6 QVSNIKTQLAMEYMRGQDYRQATASIEDAL 35 (225)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 345677888999999999999999998764
No 324
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=75.93 E-value=21 Score=44.80 Aligned_cols=110 Identities=14% Similarity=0.215 Sum_probs=71.1
Q ss_pred ceeEEEEe-CCEEEEEecCCeEE-EEeCCCCCceeeEcCCCCCCccceeEEEeCCCCCeEEEEeecCCCccEEEEecCCC
Q 002318 23 VITCMSAG-NDVIVLGTSKGWLI-RHDFGAGDSYDIDLSAGRPGEQSIHKVFVDPGGSHCIATIVGSGGAETFYTHAKWS 100 (936)
Q Consensus 23 ~i~~l~v~-~n~l~l~~~~g~l~-ridl~~~~~~~~~l~~~~~~~~~i~~i~lDp~G~hlli~~~~~~~g~~~Y~~~~~~ 100 (936)
.+.+++.+ ++.++.+...+.|+ .+|+.......+. + ....+..+.++|.|.+++++.. ++..+.++....
T Consensus 339 ~~~~~~~sdg~~l~~~s~~~~l~~~~d~~~~~~~~l~-~----~~~~~~~~~~SpDG~~la~~~~---~~~v~~~d~~tg 410 (1045)
T 1k32_A 339 RYVRRGGDTKVAFIHGTREGDFLGIYDYRTGKAEKFE-E----NLGNVFAMGVDRNGKFAVVAND---RFEIMTVDLETG 410 (1045)
T ss_dssp EEEEECSSSEEEEEEEETTEEEEEEEETTTCCEEECC-C----CCCSEEEEEECTTSSEEEEEET---TSEEEEEETTTC
T ss_pred eEEeeeEcCCCeEEEEECCCceEEEEECCCCCceEec-C----CccceeeeEECCCCCEEEEECC---CCeEEEEECCCC
Confidence 45556555 22455555677888 8898433333332 1 1357889999999999998887 788888887766
Q ss_pred CceeccCCCCceEEEEEecCCCCCCCCcceEEEEcCC----------CcEEEEEEe
Q 002318 101 KPRVLSKLKGLVVNAVAWNRQQITEASTKEIILGTDT----------GQLHEMAVD 146 (936)
Q Consensus 101 k~k~L~klkg~~I~sVaw~~~~~~~~st~~iLiGt~~----------G~i~e~~i~ 146 (936)
+.+.+..-....|.+++|.++ .+.++.++.+ +.|+...+.
T Consensus 411 ~~~~~~~~~~~~v~~~~~SpD------G~~la~~~~~~~~~~~~~~~~~i~l~d~~ 460 (1045)
T 1k32_A 411 KPTVIERSREAMITDFTISDN------SRFIAYGFPLKHGETDGYVMQAIHVYDME 460 (1045)
T ss_dssp CEEEEEECSSSCCCCEEECTT------SCEEEEEEEECSSTTCSCCEEEEEEEETT
T ss_pred ceEEeccCCCCCccceEECCC------CCeEEEEecCccccccCCCCCeEEEEECC
Confidence 666654323346889999843 2356565543 366665554
No 325
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=75.91 E-value=0.96 Score=39.23 Aligned_cols=35 Identities=14% Similarity=0.502 Sum_probs=27.4
Q ss_pred ccccccccchhhhhcccccccccccCCCCCCCCEEEEc-CCChhHHHhHHHHHhh
Q 002318 832 RDEDCGVCRRKILVAGRDYRMARGYASVGPMAPFYVFP-CGHAFHAQCLIAHVTQ 885 (936)
Q Consensus 832 ~~~~C~~C~k~L~~~~~~~~~~~~~~~~~~~~~fvvFp-CgH~fH~~CL~~~~~~ 885 (936)
..-.|++|...+.. |+ +-+ |||.|-..|+...+..
T Consensus 6 ~~~~CPI~~~~~~d------------------PV-~~~~cGh~f~r~cI~~~l~~ 41 (94)
T 2yu4_A 6 SGFTCPITKEEMKK------------------PV-KNKVCGHTYEEDAIVRMIES 41 (94)
T ss_dssp SCCBCTTTCSBCSS------------------EE-EESSSCCEEEHHHHHHHHHH
T ss_pred cEeECcCcCchhcC------------------CE-EcCCCCCeecHHHHHHHHHH
Confidence 35679999977665 44 455 9999999999988754
No 326
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B
Probab=75.87 E-value=0.77 Score=40.44 Aligned_cols=36 Identities=11% Similarity=0.189 Sum_probs=28.6
Q ss_pred ecccccccccchhhhhcccccccccccCCCCCCCCEEEEcCCChhHHHhHHHHHh
Q 002318 830 IDRDEDCGVCRRKILVAGRDYRMARGYASVGPMAPFYVFPCGHAFHAQCLIAHVT 884 (936)
Q Consensus 830 i~~~~~C~~C~k~L~~~~~~~~~~~~~~~~~~~~~fvvFpCgH~fH~~CL~~~~~ 884 (936)
+...-.|++|+..+.. | |+-||||+|-..|+.....
T Consensus 26 ~p~~~~CpI~~~~m~d------------------P-V~~~cGhtf~r~~I~~~l~ 61 (100)
T 2kre_A 26 APDEFRDPLMDTLMTD------------------P-VRLPSGTIMDRSIILRHLL 61 (100)
T ss_dssp CSTTTBCTTTCSBCSS------------------E-EEETTTEEEEHHHHHHHTT
T ss_pred CcHhhCCcCccCcccC------------------C-eECCCCCEEchHHHHHHHH
Confidence 4446789999877665 4 4568999999999999875
No 327
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=75.80 E-value=5 Score=35.79 Aligned_cols=48 Identities=15% Similarity=0.392 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccEeecccccccccchhhhh
Q 002318 792 LDDYNKQIEQLKQEMNDATHGADNIRNDISALAQRYAVIDRDEDCGVCRRKILV 845 (936)
Q Consensus 792 L~~y~~~i~~l~~~m~~~~~~~~~i~~~i~~~~~r~~~i~~~~~C~~C~k~L~~ 845 (936)
++++..++..++............+...+..+.. ++..|++||.++..
T Consensus 12 ~~~~~~~l~~L~~~~~~l~~~i~~l~~~l~~l~~------~g~~CPvCgs~l~~ 59 (112)
T 1l8d_A 12 KTTIEEERNEITQRIGELKNKIGDLKTAIEELKK------AKGKCPVCGRELTD 59 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT------CSEECTTTCCEECH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc------CCCCCCCCCCcCCH
Confidence 3444455555544433333333344444444422 37789999987765
No 328
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=74.90 E-value=33 Score=37.58 Aligned_cols=121 Identities=7% Similarity=0.005 Sum_probs=56.1
Q ss_pred HHHHcCChhHHHHHHHhh-----hh---HHHHHHHHHhccc-HHHHHHHHhCC----CCchhhHHhhHHHHHh-HChHHH
Q 002318 517 LLESYGRVEELVFFASLK-----EQ---HEIVVHHYIQQGE-AKKALQMLRKP----AVPIDLQYKFAPDLIM-LDAYET 582 (936)
Q Consensus 517 ll~~~g~~e~~l~~a~~~-----~d---y~~ll~~yi~~~~-~~~AL~~L~~~----~d~~~li~k~~~~Ll~-~~p~~t 582 (936)
++...|+.++++...+.. ++ |..+...|...|+ |++|++.+.+. ++....++..+..+.. ...+++
T Consensus 106 ~~~~~g~~~~Al~~~~~al~l~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~a~~~~g~~~~~~g~~~eA 185 (382)
T 2h6f_A 106 VLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLVEWLRDPSQE 185 (382)
T ss_dssp HHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTH
T ss_pred HHHHCCChHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHccCHHHH
Confidence 344556666665554432 11 2334456666775 88888776542 2323444444444432 344455
Q ss_pred HHHHHccCCCCCCcchh------HhhhcCCCCCCCCChHHHHHHHHHHHhhcCCCCHhHHHHHHHHhhc
Q 002318 583 VESWMTTNNLNPRKLIP------AMMRYSSEPHAKNETHEVIKYLEFCVHRLHNEDPGVHNLLLSLYAK 645 (936)
Q Consensus 583 i~ll~~~~~ld~~~li~------~L~~~~~~~~~~~~~~~~~~YLe~li~~~~~~~~~~hn~ll~Ly~~ 645 (936)
+..+-+.-.++|...-. .+.... ....++.+++..+..++.. ...++.+-.+|..
T Consensus 186 l~~~~kal~ldP~~~~a~~~lg~~~~~~g-------~~~eAl~~~~~al~l~P~~-~~a~~~lg~~l~~ 246 (382)
T 2h6f_A 186 LEFIADILNQDAKNYHAWQHRQWVIQEFK-------LWDNELQYVDQLLKEDVRN-NSVWNQRYFVISN 246 (382)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHHT-------CCTTHHHHHHHHHHHCTTC-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCccCHHHHHHHHHHHHHcC-------ChHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHH
Confidence 55553322344443110 011100 1123677777777665543 3344444444443
No 329
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=74.65 E-value=14 Score=32.29 Aligned_cols=49 Identities=18% Similarity=0.193 Sum_probs=39.8
Q ss_pred HHHchhhHHHHHHhcCC-----hh--hHHHHHHHHHHHHHhcCCHHHHHHHHHHhc
Q 002318 370 VYLDMKEYAAALANCRD-----PL--QRDQVYLVQAEAAFATKDFHRAASFYAKIN 418 (936)
Q Consensus 370 ~ll~~~~f~~Al~~~~~-----~~--~~~~I~~~~~~~L~~~g~y~~Aa~~y~~~~ 418 (936)
.+++.|+|++|+...+. |. ....+....|.-++..|+|++|...|.+..
T Consensus 11 ~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~ 66 (129)
T 2xev_A 11 DALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLV 66 (129)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 47889999999988652 22 334788889999999999999999998865
No 330
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=74.63 E-value=4.8 Score=37.47 Aligned_cols=50 Identities=16% Similarity=0.137 Sum_probs=40.9
Q ss_pred HHHHchhhHHHHHHhcCChh----hHHHHHHHHHHHHHhcCCHHHHHHHHHHhc
Q 002318 369 KVYLDMKEYAAALANCRDPL----QRDQVYLVQAEAAFATKDFHRAASFYAKIN 418 (936)
Q Consensus 369 ~~ll~~~~f~~Al~~~~~~~----~~~~I~~~~~~~L~~~g~y~~Aa~~y~~~~ 418 (936)
++|++.|+|++|++..+... .-..++...|.-++..|+|++|...|.+..
T Consensus 39 ~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al 92 (150)
T 4ga2_A 39 KLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYELEENTDKAVECYRRSV 92 (150)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCchHHHHHHHHHHH
Confidence 46889999999999876421 224678888999999999999999998875
No 331
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=74.38 E-value=4.6 Score=38.79 Aligned_cols=54 Identities=19% Similarity=0.166 Sum_probs=45.1
Q ss_pred hhHHHHHHchhhHHHHHHhcC-------------ChhhHHHHHHHHHHHHHhcCCHHHHHHHHHHhc
Q 002318 365 RDMWKVYLDMKEYAAALANCR-------------DPLQRDQVYLVQAEAAFATKDFHRAASFYAKIN 418 (936)
Q Consensus 365 ~~~W~~ll~~~~f~~Al~~~~-------------~~~~~~~I~~~~~~~L~~~g~y~~Aa~~y~~~~ 418 (936)
.+.-+.++++|.|+-|.-++. +|..+-+++.-+||.+|.+|+|..|...|.+..
T Consensus 24 ~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qAL 90 (167)
T 3ffl_A 24 IDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMAL 90 (167)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 344566999999999987753 145678899999999999999999999998875
No 332
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=74.17 E-value=67 Score=32.09 Aligned_cols=151 Identities=11% Similarity=0.089 Sum_probs=75.8
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHhcCC---CCh-HH----HHHHhcCcChHHHHHHHHHHHhhcccCchhHHHHHHH
Q 002318 391 DQVYLVQAEAAFATKDFHRAASFYAKINYI---LSF-EE----ITLKFISVSEQDALRTFLLRKLDNLAKDDKCQITMIS 462 (936)
Q Consensus 391 ~~I~~~~~~~L~~~g~y~~Aa~~y~~~~~~---~~~-E~----v~lkFl~~~~~~~L~~YL~~~l~~l~~~~~~~~~lL~ 462 (936)
.......|..++..|+|++|...|.+.... .++ .. ...-+...++.+.=..++..-+..-+.+... ....
T Consensus 15 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~--~~a~ 92 (261)
T 3qky_A 15 PQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRV--PQAE 92 (261)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTH--HHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchh--HHHH
Confidence 466778899999999999999999987621 111 11 2222344555555455555444433322211 1122
Q ss_pred HHHHHHHHHHHhhhhcccchhhccchHHHHHHHHHHHHHHhcccccCCHHHHHHHHHHcCChhHHHHHHHhhhhHHHHHH
Q 002318 463 TWATELYLDKINRLLLEDDTALENRSSEYQSIMREFRAFLSDCKDVLDEATTMKLLESYGRVEELVFFASLKEQHEIVVH 542 (936)
Q Consensus 463 ~Wl~ely~~~l~~~~~e~~~~~~~~~~~~~~~~~~l~~fl~~~~~~ld~~tv~~ll~~~g~~e~~l~~a~~~~dy~~ll~ 542 (936)
.++..+|......... ....+.+....|++++..+.+.-....+...+.. + .....+.+-.+..
T Consensus 93 ~~lg~~~~~~~~~~~~--------~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~~~------~--~~~~~~~~~~la~ 156 (261)
T 3qky_A 93 YERAMCYYKLSPPYEL--------DQTDTRKAIEAFQLFIDRYPNHELVDDATQKIRE------L--RAKLARKQYEAAR 156 (261)
T ss_dssp HHHHHHHHHHCCCTTS--------CCHHHHHHHHHHHHHHHHCTTCTTHHHHHHHHHH------H--HHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcccccc--------cchhHHHHHHHHHHHHHHCcCchhHHHHHHHHHH------H--HHHHHHHHHHHHH
Confidence 2333344321110000 0123444456667777655432222211111110 0 0011122345667
Q ss_pred HHHhcccHHHHHHHHhC
Q 002318 543 HYIQQGEAKKALQMLRK 559 (936)
Q Consensus 543 ~yi~~~~~~~AL~~L~~ 559 (936)
.|...|+|++|+..+.+
T Consensus 157 ~~~~~g~~~~A~~~~~~ 173 (261)
T 3qky_A 157 LYERRELYEAAAVTYEA 173 (261)
T ss_dssp HHHHTTCHHHHHHHHHH
T ss_pred HHHHccCHHHHHHHHHH
Confidence 88999999999998765
No 333
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2
Probab=74.12 E-value=0.91 Score=39.78 Aligned_cols=37 Identities=11% Similarity=0.101 Sum_probs=29.0
Q ss_pred ecccccccccchhhhhcccccccccccCCCCCCCCEEEEcCC-ChhHHHhHHHHHhh
Q 002318 830 IDRDEDCGVCRRKILVAGRDYRMARGYASVGPMAPFYVFPCG-HAFHAQCLIAHVTQ 885 (936)
Q Consensus 830 i~~~~~C~~C~k~L~~~~~~~~~~~~~~~~~~~~~fvvFpCg-H~fH~~CL~~~~~~ 885 (936)
+...-.|.+|...+.. |+ +-+|| |.|-+.|+...+..
T Consensus 19 ~p~~~~CpI~~~~m~d------------------PV-~~~cG~htf~r~cI~~~l~~ 56 (98)
T 1wgm_A 19 ACDEFLDPIMSTLMCD------------------PV-VLPSSRVTVDRSTIARHLLS 56 (98)
T ss_dssp CCTTTBCTTTCSBCSS------------------EE-ECTTTCCEEEHHHHHHHTTT
T ss_pred CcHhcCCcCccccccC------------------Ce-ECCCCCeEECHHHHHHHHHh
Confidence 4456789999977665 44 46999 99999999998753
No 334
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=74.01 E-value=54 Score=34.01 Aligned_cols=65 Identities=8% Similarity=0.035 Sum_probs=40.7
Q ss_pred eeEEEEeCC--EEEEEecC------------CeEEEEeC-CCCC---ceeeEcCCCCCCccceeEEEeCCCCCeEEEEee
Q 002318 24 ITCMSAGND--VIVLGTSK------------GWLIRHDF-GAGD---SYDIDLSAGRPGEQSIHKVFVDPGGSHCIATIV 85 (936)
Q Consensus 24 i~~l~v~~n--~l~l~~~~------------g~l~ridl-~~~~---~~~~~l~~~~~~~~~i~~i~lDp~G~hlli~~~ 85 (936)
+.+++++.+ .++++... +.|..+|+ .... +..+..| ..+..+-++|.|. ++++ .
T Consensus 94 ~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~------~~~~~~~~s~dg~-l~~~-~ 165 (349)
T 1jmx_B 94 MYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMP------RQVYLMRAADDGS-LYVA-G 165 (349)
T ss_dssp SSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEECC------SSCCCEEECTTSC-EEEE-S
T ss_pred ccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCccccceeeeccCC------CcccceeECCCCc-EEEc-c
Confidence 577888644 78887754 89999999 4221 2222332 2466777999998 6663 2
Q ss_pred cCCCccEEEEecCCC
Q 002318 86 GSGGAETFYTHAKWS 100 (936)
Q Consensus 86 ~~~~g~~~Y~~~~~~ 100 (936)
+..+.++....
T Consensus 166 ----~~i~~~d~~~~ 176 (349)
T 1jmx_B 166 ----PDIYKMDVKTG 176 (349)
T ss_dssp ----SSEEEECTTTC
T ss_pred ----CcEEEEeCCCC
Confidence 44655554443
No 335
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}
Probab=73.89 E-value=91 Score=34.52 Aligned_cols=151 Identities=13% Similarity=0.090 Sum_probs=82.9
Q ss_pred eeEEEEe---CCEEEEEecCCeEEEEeCCCCCceeeEcCCCCCCccceeEEEeCCCCCeEEEEeecCCC--ccEEEEecC
Q 002318 24 ITCMSAG---NDVIVLGTSKGWLIRHDFGAGDSYDIDLSAGRPGEQSIHKVFVDPGGSHCIATIVGSGG--AETFYTHAK 98 (936)
Q Consensus 24 i~~l~v~---~n~l~l~~~~g~l~ridl~~~~~~~~~l~~~~~~~~~i~~i~lDp~G~hlli~~~~~~~--g~~~Y~~~~ 98 (936)
-..+++. ++.||++-..+.|.+||+....+..+- + .......|-+||.|.+++++-..++. ...+++...
T Consensus 139 P~~lavdp~~~g~Lyv~d~~~~I~~id~~~~~v~~~~-~----~~~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~~~ 213 (430)
T 3tc9_A 139 AVWLSFDPKNHNHLYLVGEQHPTRLIDFEKEYVSTVY-S----GLSKVRTICWTHEADSMIITNDQNNNDRPNNYILTRE 213 (430)
T ss_dssp CCEEEEETTEEEEEEEEEBTEEEEEEETTTTEEEEEE-C----CCSCEEEEEECTTSSEEEEEECCSCTTSEEEEEEEGG
T ss_pred CCEEEECCCCCCeEEEEeCCCcEEEEECCCCEEEEEe-c----CCCCcceEEEeCCCCEEEEEeCCCCcccceEEEEeCC
Confidence 3788887 478888887789999999555554442 2 13467899999999988888641111 123334332
Q ss_pred C--CCceeccCCCCceEEEEEecCCCCCCCCcceEEEEc-CCCcEEEEEEecCCcccceeeEEeeeCCCCCceeeEEEEe
Q 002318 99 W--SKPRVLSKLKGLVVNAVAWNRQQITEASTKEIILGT-DTGQLHEMAVDEKDKREKYIKLLFELNELPEAFMGLQMET 175 (936)
Q Consensus 99 ~--~k~k~L~klkg~~I~sVaw~~~~~~~~st~~iLiGt-~~G~i~e~~i~~~~~~~~~~k~v~~l~~~~~~I~gi~~~~ 175 (936)
. ...+.+..+ .....+++++ ..+.+.+.. ..+.|+.+..+.. ....+..++.. ..-.+|.+..
T Consensus 214 g~~~~~~~l~~~--~~p~giavdp------~~g~lyv~d~~~~~V~~~~~~~~-----~~~~~~~~~~~-~~P~gia~~p 279 (430)
T 3tc9_A 214 SGFKVITELTKG--QNCNGAETHP------INGELYFNSWNAGQVFRYDFTTQ-----ETTPLFTIQDS-GWEFHIQFHP 279 (430)
T ss_dssp GTSCSEEEEEEC--SSCCCEEECT------TTCCEEEEETTTTEEEEEETTTT-----EEEEEEECSSS-SCCEEEEECT
T ss_pred CceeeeeeeccC--CCceEEEEeC------CCCEEEEEECCCCEEEEEECCCC-----cEEEEEEcCCC-CcceeEEEcC
Confidence 1 111233322 2344555652 134566654 3466666654332 12234444432 1246777752
Q ss_pred eccCCCceEEEEEEC-CCeEEEEe
Q 002318 176 ASLSNGTRYYVMAVT-PTRLYSFT 198 (936)
Q Consensus 176 ~~~~~~~~~~i~ast-~~rly~f~ 198 (936)
..+++.++.+ ..+++.|.
T Consensus 280 -----dG~~lyv~d~~~~~I~~~~ 298 (430)
T 3tc9_A 280 -----SGNYAYIVVVNQHYILRSD 298 (430)
T ss_dssp -----TSSEEEEEETTTTEEEEEE
T ss_pred -----CCCEEEEEECCCCEEEEEe
Confidence 2244555444 56777653
No 336
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=73.74 E-value=5.6 Score=33.98 Aligned_cols=49 Identities=16% Similarity=0.007 Sum_probs=37.4
Q ss_pred HHHchhhHHHHHHhcCChh----hHHHHHHHHHHHHHhcCCHHHHHHHHHHhc
Q 002318 370 VYLDMKEYAAALANCRDPL----QRDQVYLVQAEAAFATKDFHRAASFYAKIN 418 (936)
Q Consensus 370 ~ll~~~~f~~Al~~~~~~~----~~~~I~~~~~~~L~~~g~y~~Aa~~y~~~~ 418 (936)
.|++.|+|++|+...+... .-..+....|.-++..|+|++|...|.+..
T Consensus 16 ~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al 68 (100)
T 3ma5_A 16 EHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGI 68 (100)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4778899999998875321 123467788889999999999999888765
No 337
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=73.69 E-value=45 Score=39.28 Aligned_cols=139 Identities=11% Similarity=0.070 Sum_probs=71.7
Q ss_pred cCCeEEEEeCCCCCceeeEcCCCCCCccceeEEEeCCCCCeEEEEeecCCCc-----cEEEEecCCC-CceeccCCCC-c
Q 002318 39 SKGWLIRHDFGAGDSYDIDLSAGRPGEQSIHKVFVDPGGSHCIATIVGSGGA-----ETFYTHAKWS-KPRVLSKLKG-L 111 (936)
Q Consensus 39 ~~g~l~ridl~~~~~~~~~l~~~~~~~~~i~~i~lDp~G~hlli~~~~~~~g-----~~~Y~~~~~~-k~k~L~klkg-~ 111 (936)
..+.|+++|+...+...+... ......+..+...|.|.++++++. ++ ..+.++.... +.+.+....+ .
T Consensus 233 ~~~~l~~~d~~~~~~~~~~~~--~~~~~~~~~~~~spdg~~l~~~~~---~~~~~~~~v~~~d~~~g~~~~~~~~~~~~~ 307 (706)
T 2z3z_A 233 HHVTVGIYHLATGKTVYLQTG--EPKEKFLTNLSWSPDENILYVAEV---NRAQNECKVNAYDAETGRFVRTLFVETDKH 307 (706)
T ss_dssp CEEEEEEEETTTTEEEECCCC--SCTTCEEEEEEECTTSSEEEEEEE---CTTSCEEEEEEEETTTCCEEEEEEEEECSS
T ss_pred CeeEEEEEECCCCceEeeccC--CCCceeEeeEEEECCCCEEEEEEe---CCCCCeeEEEEEECCCCceeeEEEEccCCC
Confidence 346799999933333222221 112356889999999999988765 33 5556665544 3343321111 1
Q ss_pred ---eEEEEEecCCCCCCCCcceEE-EEcCCCcEEEEEEecCCcccceeeEEeeeCCCCCceee-EEEEeeccCCCceEEE
Q 002318 112 ---VVNAVAWNRQQITEASTKEII-LGTDTGQLHEMAVDEKDKREKYIKLLFELNELPEAFMG-LQMETASLSNGTRYYV 186 (936)
Q Consensus 112 ---~I~sVaw~~~~~~~~st~~iL-iGt~~G~i~e~~i~~~~~~~~~~k~v~~l~~~~~~I~g-i~~~~~~~~~~~~~~i 186 (936)
.+.+++|.+.. .+.+| .+..+|.+-...++... +..+. +.....++.+ +.|. .+.+.++
T Consensus 308 ~~~~~~~~~~sp~~-----dg~~l~~~~~~g~~~l~~~~~~~---~~~~~---l~~~~~~v~~~~~~s-----pdg~~l~ 371 (706)
T 2z3z_A 308 YVEPLHPLTFLPGS-----NNQFIWQSRRDGWNHLYLYDTTG---RLIRQ---VTKGEWEVTNFAGFD-----PKGTRLY 371 (706)
T ss_dssp CCCCCSCCEECTTC-----SSEEEEEECTTSSCEEEEEETTS---CEEEE---CCCSSSCEEEEEEEC-----TTSSEEE
T ss_pred eECccCCceeecCC-----CCEEEEEEccCCccEEEEEECCC---CEEEe---cCCCCeEEEeeeEEc-----CCCCEEE
Confidence 24567887410 12344 45556654444443221 11233 3322345766 5564 2235666
Q ss_pred EEECC-----CeEEEEe
Q 002318 187 MAVTP-----TRLYSFT 198 (936)
Q Consensus 187 ~ast~-----~rly~f~ 198 (936)
++++. .+||.|.
T Consensus 372 ~~~~~~~~~~~~l~~~d 388 (706)
T 2z3z_A 372 FESTEASPLERHFYCID 388 (706)
T ss_dssp EEESSSCTTCBEEEEEE
T ss_pred EEecCCCCceEEEEEEE
Confidence 65553 3788775
No 338
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=73.51 E-value=14 Score=40.38 Aligned_cols=50 Identities=10% Similarity=0.094 Sum_probs=37.7
Q ss_pred HHHHchhhHHHHHHhcCC-----h----------------hhHHHHHHHHHHHHHhcCCHHHHHHHHHHhc
Q 002318 369 KVYLDMKEYAAALANCRD-----P----------------LQRDQVYLVQAEAAFATKDFHRAASFYAKIN 418 (936)
Q Consensus 369 ~~ll~~~~f~~Al~~~~~-----~----------------~~~~~I~~~~~~~L~~~g~y~~Aa~~y~~~~ 418 (936)
+-+.+.|+|++|++..+. + .........-|.-++..|+|++|.+.|.+..
T Consensus 12 ~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~ 82 (434)
T 4b4t_Q 12 RRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHST 82 (434)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTH
T ss_pred HHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 458889999999987531 1 0123456677888999999999999998765
No 339
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=72.56 E-value=4 Score=34.36 Aligned_cols=49 Identities=18% Similarity=0.323 Sum_probs=38.9
Q ss_pred HHHchhhHHHHHHhcCC-----hhhHHHHHHHHHHHHHhcCCHHHHHHHHHHhc
Q 002318 370 VYLDMKEYAAALANCRD-----PLQRDQVYLVQAEAAFATKDFHRAASFYAKIN 418 (936)
Q Consensus 370 ~ll~~~~f~~Al~~~~~-----~~~~~~I~~~~~~~L~~~g~y~~Aa~~y~~~~ 418 (936)
.++..|+|++|++..+. |.....+....|..++..|+|++|...|.+..
T Consensus 9 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al 62 (99)
T 2kc7_A 9 ELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAI 62 (99)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 37889999999988763 32322378888999999999999999998875
No 340
>3uc1_A DNA gyrase subunit A; DNA binding protein, topoisomerase, isomerase; HET: DNA; 1.65A {Mycobacterium tuberculosis}
Probab=72.04 E-value=51 Score=35.30 Aligned_cols=153 Identities=13% Similarity=0.138 Sum_probs=91.8
Q ss_pred CCEEEEEecCCeEEEEeC-CCC-------CceeeEcCCCCCCccceeEEEeCCCCCeEEEEeecCCCccEEEEecC----
Q 002318 31 NDVIVLGTSKGWLIRHDF-GAG-------DSYDIDLSAGRPGEQSIHKVFVDPGGSHCIATIVGSGGAETFYTHAK---- 98 (936)
Q Consensus 31 ~n~l~l~~~~g~l~ridl-~~~-------~~~~~~l~~~~~~~~~i~~i~lDp~G~hlli~~~~~~~g~~~Y~~~~---- 98 (936)
+.++++.++.|.|-|..+ ... .+..+.+. .++.+..++.-.+..++++-|+ .|..|++...
T Consensus 3 E~v~v~ls~~GyiKr~~~~~y~~~~rgg~g~~~~~~k----e~D~~~~~~~~~t~d~ll~fT~---~Gr~y~~~~~~lp~ 75 (327)
T 3uc1_A 3 EDVVVTITETGYAKRTKTDLYRSQKRGGKGVQGAGLK----QDDIVAHFFVCSTHDLILFFTT---QGRVYRAKAYDLPE 75 (327)
T ss_dssp CEEEEEEETTSEEEEEEHHHHHHHC--------CCCC----GGGCEEEEEEEETTSEEEEEET---TSEEEEEEGGGSCB
T ss_pred ccEEEEEeCCCEEEEeeHHHhhhcccCCCCccccccC----CCCEEEEEEEeCCCCEEEEEeC---CCeEEEEEHHHCcC
Confidence 457889999999999976 111 11112111 2467888888888888888888 8999988631
Q ss_pred ---CCCceecc---CC-CCceEEEEEecCCCCCCCCcceEEEEcCCCcEEEEEEecCCcccceeeEEeeeCCCCCceeeE
Q 002318 99 ---WSKPRVLS---KL-KGLVVNAVAWNRQQITEASTKEIILGTDTGQLHEMAVDEKDKREKYIKLLFELNELPEAFMGL 171 (936)
Q Consensus 99 ---~~k~k~L~---kl-kg~~I~sVaw~~~~~~~~st~~iLiGt~~G~i~e~~i~~~~~~~~~~k~v~~l~~~~~~I~gi 171 (936)
..+-.+|. ++ .|-.|.++.--++. . ....+++.|++|.|.-+.+..-...-+.=+....+.+. ..+.++
T Consensus 76 ~~r~~~G~~i~~~l~l~~~e~i~~~~~~~~~-~--~e~~~v~~T~~G~iKr~~l~~~~~~~r~G~~~i~lke~-D~lv~~ 151 (327)
T 3uc1_A 76 ASRTARGQHVANLLAFQPEERIAQVIQIRGY-T--DAPYLVLATRNGLVKKSKLTDFDSNRSGGIVAVNLRDN-DELVGA 151 (327)
T ss_dssp CCSSSCCEEHHHHTTCCTTCCEEEEEEESST-T--SSSEEEEEETTSEEEEEEGGGGCCCCSSCEESCBCCTT-CCEEEE
T ss_pred CCccCCCEEHHHccCCCCCCEEEEEEEeccC-C--CCCEEEEEcCCCEEEEeEHHHhhccccCceEEEEECCC-CEEEEE
Confidence 12333322 22 34455555333221 1 23479999999999888775321111111233456542 346666
Q ss_pred EEEeeccCCCceEEEEEECCCeEEEEec
Q 002318 172 QMETASLSNGTRYYVMAVTPTRLYSFTG 199 (936)
Q Consensus 172 ~~~~~~~~~~~~~~i~ast~~rly~f~~ 199 (936)
.... ....++++|...++|.|..
T Consensus 152 ~~~~-----~~d~ill~T~~G~~~rf~~ 174 (327)
T 3uc1_A 152 VLCS-----AGDDLLLVSANGQSIRFSA 174 (327)
T ss_dssp EEEC-----TTCEEEEEETTSEEEEEEC
T ss_pred EEec-----CCCEEEEEECCCeEEEEEC
Confidence 5542 2356888899999998865
No 341
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=72.00 E-value=5.5 Score=35.21 Aligned_cols=49 Identities=16% Similarity=0.176 Sum_probs=39.4
Q ss_pred HHHchhhHHHHHHhcCChh----hHHHHHHHHHHHHHhcCCHHHHHHHHHHhc
Q 002318 370 VYLDMKEYAAALANCRDPL----QRDQVYLVQAEAAFATKDFHRAASFYAKIN 418 (936)
Q Consensus 370 ~ll~~~~f~~Al~~~~~~~----~~~~I~~~~~~~L~~~g~y~~Aa~~y~~~~ 418 (936)
.++..|+|++|++..+... .-..+....|.-++..|+|++|...|.+..
T Consensus 13 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al 65 (126)
T 3upv_A 13 EYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAI 65 (126)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 4788999999998865321 224678888999999999999999998875
No 342
>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...
Probab=71.98 E-value=32 Score=41.20 Aligned_cols=130 Identities=11% Similarity=0.006 Sum_probs=73.2
Q ss_pred ceehhHHHHHhhcCCCceeEEEEeCCEEEEEecCCeEEEEeCCCCCceeeEcCCCCCCc--cceeEEEeCCCCCeEEEEe
Q 002318 7 VFQVDVLERYAAKGRGVITCMSAGNDVIVLGTSKGWLIRHDFGAGDSYDIDLSAGRPGE--QSIHKVFVDPGGSHCIATI 84 (936)
Q Consensus 7 ~f~~~~~~~~~~~~~~~i~~l~v~~n~l~l~~~~g~l~ridl~~~~~~~~~l~~~~~~~--~~i~~i~lDp~G~hlli~~ 84 (936)
.|.++.+..- .+.....+++-+++=-+++..+|.|.++|+...+...+ +....... .....+.+.|.|.++++.+
T Consensus 4 ~~tl~~~~~~--~~~~~~~~~~w~~dg~~~~~~~~~i~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~Spdg~~l~~~~ 80 (740)
T 4a5s_A 4 TYTLTDYLKN--TYRLKLYSLRWISDHEYLYKQENNILVFNAEYGNSSVF-LENSTFDEFGHSINDYSISPDGQFILLEY 80 (740)
T ss_dssp ECCHHHHHHT--CSCCCCCCEEECSSSEEEEEETTEEEEEETTTCCEEEE-ECTTTTTTCCSCCCEEEECTTSSEEEEEE
T ss_pred ceeHHHHhcC--cccccccccEECCCCcEEEEcCCcEEEEECCCCceEEE-EechhhhhhcccccceEECCCCCEEEEEE
Confidence 3455555432 23334567777755334444489999999932332222 22111111 1234478899999999988
Q ss_pred ecC------CCccEEEEecCCCCceeccCCCCceEEEEEecCCCCCCCCcceEEEEcCCCcEEEEEEec
Q 002318 85 VGS------GGAETFYTHAKWSKPRVLSKLKGLVVNAVAWNRQQITEASTKEIILGTDTGQLHEMAVDE 147 (936)
Q Consensus 85 ~~~------~~g~~~Y~~~~~~k~k~L~klkg~~I~sVaw~~~~~~~~st~~iLiGt~~G~i~e~~i~~ 147 (936)
+.. ..|..|-++....+.+.|.... -.+.+++|+|+ .+.|..+ .++.||...+..
T Consensus 81 ~~~~~~r~~~~~~~~~~d~~~~~~~~l~~~~-~~~~~~~~SPd------G~~la~~-~~~~i~~~~~~~ 141 (740)
T 4a5s_A 81 NYVKQWRHSYTASYDIYDLNKRQLITEERIP-NNTQWVTWSPV------GHKLAYV-WNNDIYVKIEPN 141 (740)
T ss_dssp EEEECSSSCEEEEEEEEETTTTEECCSSCCC-TTEEEEEECSS------TTCEEEE-ETTEEEEESSTT
T ss_pred CCeeeEEEccceEEEEEECCCCcEEEcccCC-CcceeeEECCC------CCEEEEE-ECCeEEEEECCC
Confidence 710 0144445566665666665432 36899999953 1245444 667788766544
No 343
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=71.92 E-value=16 Score=43.42 Aligned_cols=114 Identities=10% Similarity=0.016 Sum_probs=68.1
Q ss_pred eeEEEEeCC--EEEEEecCCeEEEEeC-CCCCceeeEcCCCCCCccceeEEEeCCCCCeEEEEeecC------CCccEEE
Q 002318 24 ITCMSAGND--VIVLGTSKGWLIRHDF-GAGDSYDIDLSAGRPGEQSIHKVFVDPGGSHCIATIVGS------GGAETFY 94 (936)
Q Consensus 24 i~~l~v~~n--~l~l~~~~g~l~ridl-~~~~~~~~~l~~~~~~~~~i~~i~lDp~G~hlli~~~~~------~~g~~~Y 94 (936)
+.+++.+.+ +++ ...+|+|.++|+ .+.....+.-+ ......|..+.+.|.|.+++.+++.. .++..+-
T Consensus 19 ~~~~~~spdg~~~~-~~~dg~i~~~d~~~g~~~~~~~~~--~~~~~~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~i~~ 95 (723)
T 1xfd_A 19 DPEAKWISDTEFIY-REQKGTVRLWNVETNTSTVLIEGK--KIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVL 95 (723)
T ss_dssp CCCCCBSSSSCBCC-CCSSSCEEEBCGGGCCCEEEECTT--TTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEE
T ss_pred ccccEEcCCCcEEE-EeCCCCEEEEECCCCcEEEEeccc--cccccccceEEECCCCCEEEEEecCccceeecceeeEEE
Confidence 455565543 333 356789999999 54433222211 11012488999999999998887611 0145555
Q ss_pred EecCCCCceeccCCCCc--eEEEEEecCCCCCCCCcceEEEEcCCCcEEEEEEec
Q 002318 95 THAKWSKPRVLSKLKGL--VVNAVAWNRQQITEASTKEIILGTDTGQLHEMAVDE 147 (936)
Q Consensus 95 ~~~~~~k~k~L~klkg~--~I~sVaw~~~~~~~~st~~iLiGt~~G~i~e~~i~~ 147 (936)
++....+.+.|....++ .+.+++|+++ .+.+..++. +.|+...+..
T Consensus 96 ~d~~~~~~~~l~~~~~~~~~~~~~~~SPd------G~~la~~~~-~~i~~~~~~~ 143 (723)
T 1xfd_A 96 SKIPHGDPQSLDPPEVSNAKLQYAGWGPK------GQQLIFIFE-NNIYYCAHVG 143 (723)
T ss_dssp EESSSCCCEECCCTTCCSCCCSBCCBCSS------TTCEEEEET-TEEEEESSSS
T ss_pred EECCCCceEeccCCccccccccccEECCC------CCEEEEEEC-CeEEEEECCC
Confidence 66666566667654443 3889999953 235666554 6777765544
No 344
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=71.88 E-value=64 Score=33.24 Aligned_cols=49 Identities=12% Similarity=-0.016 Sum_probs=35.8
Q ss_pred HHHchhhHHHHHHhcCC----------hhhHHHHHHHHHHHHHhcCCHHHHHHHHHHhc
Q 002318 370 VYLDMKEYAAALANCRD----------PLQRDQVYLVQAEAAFATKDFHRAASFYAKIN 418 (936)
Q Consensus 370 ~ll~~~~f~~Al~~~~~----------~~~~~~I~~~~~~~L~~~g~y~~Aa~~y~~~~ 418 (936)
+|...|+|++|++..+. +.....++..-|.-+...|+|++|...|.+..
T Consensus 46 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al 104 (292)
T 1qqe_A 46 IYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAI 104 (292)
T ss_dssp HHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 46677888888877542 22234677778888889999999998888765
No 345
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=71.85 E-value=59 Score=32.73 Aligned_cols=49 Identities=20% Similarity=0.259 Sum_probs=36.9
Q ss_pred HHHchhhHHHHHHhcCChh--hHHHHHHHHHHHHHh----cCCHHHHHHHHHHhc
Q 002318 370 VYLDMKEYAAALANCRDPL--QRDQVYLVQAEAAFA----TKDFHRAASFYAKIN 418 (936)
Q Consensus 370 ~ll~~~~f~~Al~~~~~~~--~~~~I~~~~~~~L~~----~g~y~~Aa~~y~~~~ 418 (936)
.++..|+|++|+++.+... .-.......|..+.. .|++++|...|.+..
T Consensus 15 ~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~ 69 (273)
T 1ouv_A 15 KSYKEKDFTQAKKYFEKACDLKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKAC 69 (273)
T ss_dssp HHHHTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHH
Confidence 4777899999998865321 122456677888888 999999999998875
No 346
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=71.58 E-value=1e+02 Score=32.22 Aligned_cols=111 Identities=12% Similarity=0.072 Sum_probs=61.9
Q ss_pred CceeEEEEeC-CEEEEEecCC-------------------------eEEEEeCCCCCceeeEcCCCCCCccceeEEEeCC
Q 002318 22 GVITCMSAGN-DVIVLGTSKG-------------------------WLIRHDFGAGDSYDIDLSAGRPGEQSIHKVFVDP 75 (936)
Q Consensus 22 ~~i~~l~v~~-n~l~l~~~~g-------------------------~l~ridl~~~~~~~~~l~~~~~~~~~i~~i~lDp 75 (936)
+.++++|+.. +.++++...+ +|+++|.....+.... .. ..-.....|.+||
T Consensus 24 ~~v~~va~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~-~~--~~~~~p~gia~d~ 100 (329)
T 3fvz_A 24 GQVSGVALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQSS-GK--NLFYLPHGLSIDT 100 (329)
T ss_dssp SCEEEEEECTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEEEE-CT--TTCSSEEEEEECT
T ss_pred CCceEEEECCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEecc-CC--CccCCceEEEECC
Confidence 4689999976 3555555444 6999998323332211 11 1124678999999
Q ss_pred CCCeEEEEeecCCCccEEEEecCCC--CceeccC--------CCCceEEEEEecCCCCCCCCcceEEEEc--CCCcEEEE
Q 002318 76 GGSHCIATIVGSGGAETFYTHAKWS--KPRVLSK--------LKGLVVNAVAWNRQQITEASTKEIILGT--DTGQLHEM 143 (936)
Q Consensus 76 ~G~hlli~~~~~~~g~~~Y~~~~~~--k~k~L~k--------lkg~~I~sVaw~~~~~~~~st~~iLiGt--~~G~i~e~ 143 (936)
.|. ++++.. +++..+-+..... ....+.. -.-.....|++++. .+.+++.. .++.|...
T Consensus 101 ~g~-l~v~d~--~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~------~g~lyv~d~~~~~~I~~~ 171 (329)
T 3fvz_A 101 DGN-YWVTDV--ALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPS------TGAVFVSDGYCNSRIVQF 171 (329)
T ss_dssp TSC-EEEEET--TTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTT------TCCEEEEECSSCCEEEEE
T ss_pred CCC-EEEEEC--CCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCC------CCeEEEEeCCCCCeEEEE
Confidence 998 555533 1466665654332 2333321 01125788999842 23566654 35666655
Q ss_pred E
Q 002318 144 A 144 (936)
Q Consensus 144 ~ 144 (936)
.
T Consensus 172 ~ 172 (329)
T 3fvz_A 172 S 172 (329)
T ss_dssp C
T ss_pred c
Confidence 4
No 347
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=71.44 E-value=87 Score=32.65 Aligned_cols=61 Identities=7% Similarity=-0.064 Sum_probs=38.9
Q ss_pred eEEEEe--CCEEEEEecCCeEEEEeCCCCCceeeEcCCCCC---------------CccceeEEEeCCCCCeEEEEee
Q 002318 25 TCMSAG--NDVIVLGTSKGWLIRHDFGAGDSYDIDLSAGRP---------------GEQSIHKVFVDPGGSHCIATIV 85 (936)
Q Consensus 25 ~~l~v~--~n~l~l~~~~g~l~ridl~~~~~~~~~l~~~~~---------------~~~~i~~i~lDp~G~hlli~~~ 85 (936)
.++++. ++++|+++.+|.|+++|.....+..+..+.... ....+..|.+||.+.+++|+..
T Consensus 22 ~~i~~d~~g~~l~v~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g~l~v~d~ 99 (322)
T 2fp8_A 22 NSFTFDSTNKGFYTSVQDGRVIKYEGPNSGFVDFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNNQLYIVDC 99 (322)
T ss_dssp CCEECCTTCSSEEEECTTSEEEEECCTTTCEEEEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTTEEEEEET
T ss_pred eEEEEcCCCCEEEEEcCCCeEEEECCCCCceEEEecccccccccccccccchhccccCCCCceEEEcCCCCcEEEEEC
Confidence 456664 356999999999999998444455454322100 0135788999984346777754
No 348
>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}
Probab=70.84 E-value=1.8 Score=37.61 Aligned_cols=31 Identities=35% Similarity=0.619 Sum_probs=25.8
Q ss_pred cccccchhhhhcccccccccccCCCCCCCCEEEEcCCChhHHHhHHHHH
Q 002318 835 DCGVCRRKILVAGRDYRMARGYASVGPMAPFYVFPCGHAFHAQCLIAHV 883 (936)
Q Consensus 835 ~C~~C~k~L~~~~~~~~~~~~~~~~~~~~~fvvFpCgH~fH~~CL~~~~ 883 (936)
-|+.|+.|+... --+.||+|+|-.+|.....
T Consensus 3 fC~~C~~Pi~iy------------------gRmIPCkHvFCydCa~~~~ 33 (101)
T 3vk6_A 3 FCDKCGLPIKVY------------------GRMIPCKHVFCYDCAILHE 33 (101)
T ss_dssp BCTTTCSBCSEE------------------EEEETTCCEEEHHHHHHHH
T ss_pred ecCccCCCeEEE------------------eeeccccccHHHHHHHHHH
Confidence 499999998873 3378999999999998754
No 349
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=70.64 E-value=7 Score=33.22 Aligned_cols=49 Identities=16% Similarity=0.114 Sum_probs=38.3
Q ss_pred HHHchhhHHHHHHhcCCh----hhHHHHHHHHHHHHHhcCCHHHHHHHHHHhc
Q 002318 370 VYLDMKEYAAALANCRDP----LQRDQVYLVQAEAAFATKDFHRAASFYAKIN 418 (936)
Q Consensus 370 ~ll~~~~f~~Al~~~~~~----~~~~~I~~~~~~~L~~~g~y~~Aa~~y~~~~ 418 (936)
.++..|+|++|+...+.. ..-..+....|..++..|+|++|...|.+..
T Consensus 13 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~ 65 (118)
T 1elw_A 13 KALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTV 65 (118)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHH
Confidence 477889999999886531 1224577788999999999999999998865
No 350
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=70.50 E-value=6.2 Score=33.24 Aligned_cols=49 Identities=12% Similarity=0.351 Sum_probs=39.3
Q ss_pred HHHchhhHHHHHHhcCChh----hHHHHHHHHHHHHHhcCCHHHHHHHHHHhc
Q 002318 370 VYLDMKEYAAALANCRDPL----QRDQVYLVQAEAAFATKDFHRAASFYAKIN 418 (936)
Q Consensus 370 ~ll~~~~f~~Al~~~~~~~----~~~~I~~~~~~~L~~~g~y~~Aa~~y~~~~ 418 (936)
.++..|+|++|+.+.+... ....+....|..++..|+|++|...|.+..
T Consensus 15 ~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~ 67 (112)
T 2kck_A 15 LQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVI 67 (112)
T ss_dssp HHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 4788999999998865321 224577888999999999999999998875
No 351
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=70.47 E-value=25 Score=34.37 Aligned_cols=49 Identities=14% Similarity=0.175 Sum_probs=39.4
Q ss_pred HHHchhhHHHHHHhcCCh----hhHHHHHHHHHHHHHhcCCHHHHHHHHHHhc
Q 002318 370 VYLDMKEYAAALANCRDP----LQRDQVYLVQAEAAFATKDFHRAASFYAKIN 418 (936)
Q Consensus 370 ~ll~~~~f~~Al~~~~~~----~~~~~I~~~~~~~L~~~g~y~~Aa~~y~~~~ 418 (936)
.+...|+|++|+++.+.. .....+....|..++..|+|++|.+.|.+..
T Consensus 66 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~ 118 (243)
T 2q7f_A 66 LLSSVNELERALAFYDKALELDSSAATAYYGAGNVYVVKEMYKEAKDMFEKAL 118 (243)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 477889999999987632 1235677788999999999999999998865
No 352
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=70.27 E-value=6.9 Score=36.78 Aligned_cols=49 Identities=16% Similarity=0.045 Sum_probs=35.9
Q ss_pred HHHchhhHHHHHHhcCChh----hHHHHHHHHHHHHHhcCCHHHHHHHHHHhc
Q 002318 370 VYLDMKEYAAALANCRDPL----QRDQVYLVQAEAAFATKDFHRAASFYAKIN 418 (936)
Q Consensus 370 ~ll~~~~f~~Al~~~~~~~----~~~~I~~~~~~~L~~~g~y~~Aa~~y~~~~ 418 (936)
.+++.|+|++|+...+... .-.......|.-++..|+|++|...|.+..
T Consensus 45 ~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al 97 (151)
T 3gyz_A 45 DFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAF 97 (151)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHH
Confidence 4677888888888865311 223466677888888889999988888765
No 353
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=70.08 E-value=0.75 Score=37.99 Aligned_cols=29 Identities=28% Similarity=0.721 Sum_probs=21.9
Q ss_pred cccccccchhhhhcccccccccccCCCCCCCCEEEEcCCCh-hHHHhHH
Q 002318 833 DEDCGVCRRKILVAGRDYRMARGYASVGPMAPFYVFPCGHA-FHAQCLI 880 (936)
Q Consensus 833 ~~~C~~C~k~L~~~~~~~~~~~~~~~~~~~~~fvvFpCgH~-fH~~CL~ 880 (936)
...|.+|...... .++.||||. |...|+.
T Consensus 25 ~~~C~IC~~~~~~-------------------~~~~pCgH~~~C~~C~~ 54 (75)
T 2ecg_A 25 EKLCKICMDRNIA-------------------IVFVPCGHLVTCKQCAE 54 (75)
T ss_dssp HHSCSSSCSSCCC-------------------BCCSSSCCCCBCHHHHH
T ss_pred CCCCCcCCCCCCC-------------------EEEecCCCHHHHHHHhh
Confidence 3479999866433 344699999 9999995
No 354
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=69.93 E-value=11 Score=33.69 Aligned_cols=49 Identities=16% Similarity=0.207 Sum_probs=39.8
Q ss_pred HHHchhhHHHHHHhcCC-----hh--hHHHHHHHHHHHHHhcCCHHHHHHHHHHhc
Q 002318 370 VYLDMKEYAAALANCRD-----PL--QRDQVYLVQAEAAFATKDFHRAASFYAKIN 418 (936)
Q Consensus 370 ~ll~~~~f~~Al~~~~~-----~~--~~~~I~~~~~~~L~~~g~y~~Aa~~y~~~~ 418 (936)
.+++.|+|++|+++.+. |. ....+....|..++..|+|++|...|.+..
T Consensus 37 ~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~ 92 (148)
T 2dba_A 37 ELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAI 92 (148)
T ss_dssp HHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHH
Confidence 46788999999988642 32 246788899999999999999999998765
No 355
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Probab=69.72 E-value=72 Score=37.71 Aligned_cols=161 Identities=11% Similarity=0.092 Sum_probs=89.4
Q ss_pred CceeEEEEeCCEEEEEec-----CCeEEEEeC-CCCCceee-EcCCC-CCCccceeEEEeCCCCCeEEEEeecCCC--cc
Q 002318 22 GVITCMSAGNDVIVLGTS-----KGWLIRHDF-GAGDSYDI-DLSAG-RPGEQSIHKVFVDPGGSHCIATIVGSGG--AE 91 (936)
Q Consensus 22 ~~i~~l~v~~n~l~l~~~-----~g~l~ridl-~~~~~~~~-~l~~~-~~~~~~i~~i~lDp~G~hlli~~~~~~~--g~ 91 (936)
+.++...-.++.+++... .+.|+|.+. .+.. ..+ +.... ......+..+-+.|.|.+|+.+.+.+|+ ..
T Consensus 70 ~~~~~p~~dG~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~l~d~~~~a~~~~~~~~~~~~SPDG~~la~~~~~~G~~~~~ 148 (695)
T 2bkl_A 70 DSVSTPSRRNGRFFYVRTHKDKEKAILYWRQGESGQE-KVLLDPNGWSKDGTVSLGTWAVSWDGKKVAFAQKPNAADEAV 148 (695)
T ss_dssp CEECCCEEETTEEEEEEECTTCSSCEEEEEESTTSCC-EEEECGGGSSSSSCEEEEEEEECTTSSEEEEEEEETTCSCCE
T ss_pred ccCCCCEEECCEEEEEEEcCCCeEEEEEEEcCCCCCc-EEEEchHHhccCCCEEEEEEEECCCCCEEEEEECCCCCceEE
Confidence 456666778888887765 356899998 4432 222 11100 1112367888899999999988773222 34
Q ss_pred EEEEecCCCCceeccCCCCceEEEEEecCCCCCCCCcceEEEEcCCCc-------------EEEEEEecCCcccceeeEE
Q 002318 92 TFYTHAKWSKPRVLSKLKGLVVNAVAWNRQQITEASTKEIILGTDTGQ-------------LHEMAVDEKDKREKYIKLL 158 (936)
Q Consensus 92 ~~Y~~~~~~k~k~L~klkg~~I~sVaw~~~~~~~~st~~iLiGt~~G~-------------i~e~~i~~~~~~~~~~k~v 158 (936)
.+-++....+......+.+....+++|.++ .+.|+.++.++. ||...+...... -+.+
T Consensus 149 i~v~dl~tg~~~~~~~~~~~~~~~~~wspD------g~~l~~~~~d~~~~~~~~~~~~~~~v~~~~l~t~~~~---~~lv 219 (695)
T 2bkl_A 149 LHVIDVDSGEWSKVDVIEGGKYATPKWTPD------SKGFYYEWLPTDPSIKVDERPGYTTIRYHTLGTEPSK---DTVV 219 (695)
T ss_dssp EEEEETTTCCBCSSCCBSCCTTCCCEECTT------SSEEEEEECCCCTTSCGGGGGGGCEEEEEETTSCGGG---CEEE
T ss_pred EEEEECCCCCCcCCcccCcccccceEEecC------CCEEEEEEecCCCCCccccCCCCCEEEEEECCCCchh---ceEE
Confidence 555665554433111223333368999843 225666665443 777666543111 2345
Q ss_pred eeeCCCCCceeeEEEEeeccCCCceEEEEEECCC----eEEEE
Q 002318 159 FELNELPEAFMGLQMETASLSNGTRYYVMAVTPT----RLYSF 197 (936)
Q Consensus 159 ~~l~~~~~~I~gi~~~~~~~~~~~~~~i~ast~~----rly~f 197 (936)
+..++.+..+.++.|.. +.+++++.+... .+|.+
T Consensus 220 ~~~~~~~~~~~~~~~Sp-----DG~~l~~~~~~~~~~~~l~~~ 257 (695)
T 2bkl_A 220 HERTGDPTTFLQSDLSR-----DGKYLFVYILRGWSENDVYWK 257 (695)
T ss_dssp ECCCCCTTCEEEEEECT-----TSCCEEEEEEETTTEEEEEEE
T ss_pred EecCCCCEEEEEEEECC-----CCCEEEEEEeCCCCceEEEEE
Confidence 55554334577777752 235666655433 66655
No 356
>4d9s_A UVB-resistance protein UVR8; UV resistance, UV-B photoreceptor, tryptophan chromophores, homodimer, COP1, chromatin-binding protein; 1.70A {Arabidopsis thaliana} PDB: 4dnw_A 4dnu_A 4dnv_A
Probab=69.52 E-value=1.3e+02 Score=32.76 Aligned_cols=155 Identities=17% Similarity=0.192 Sum_probs=90.8
Q ss_pred CceeEEEEeCCEEEEEecCC-eEEEEeC-------CCCCce-eeEcCCCCCCccceeEEEeCCCCCeEEEEeecCCCccE
Q 002318 22 GVITCMSAGNDVIVLGTSKG-WLIRHDF-------GAGDSY-DIDLSAGRPGEQSIHKVFVDPGGSHCIATIVGSGGAET 92 (936)
Q Consensus 22 ~~i~~l~v~~n~l~l~~~~g-~l~ridl-------~~~~~~-~~~l~~~~~~~~~i~~i~lDp~G~hlli~~~~~~~g~~ 92 (936)
..|..++...+..+..+.+| .||-+=. .++... ..+.|.......+|.+|.. ...|.++-++ +|.+
T Consensus 68 ~~i~~va~G~~ht~al~~~gg~v~~wG~n~~GqLG~g~~~~~~~p~~v~~l~~~~i~~ia~--G~~h~~alt~---~G~v 142 (406)
T 4d9s_A 68 HQIVSVTCGADHTVAYSQSGMEVYSWGWGDFGRLGHGNSSDLFTPLPIKALHGIRIKQIAC--GDSHCLAVTM---EGEV 142 (406)
T ss_dssp SCEEEEEECSSEEEEEETTTTEEEEEECCGGGTTCSSSCCCEEEEEECGGGTTCCEEEEEE--CSSEEEEEET---TSCE
T ss_pred CCEEEEEeCcceEEEEECCCCEEEEEcCCCCcCCCCCCCCccccceEecccCCCCEEEEEE--ChhheEEEcC---CCcE
Confidence 36899999999988777765 9999932 112111 1222222222347888776 5778888888 8999
Q ss_pred EEEecCCC------------CceeccCCCCceEEEEEecCCCCCCCCcceEEEEcCCCcEEEEEEecC------Ccccce
Q 002318 93 FYTHAKWS------------KPRVLSKLKGLVVNAVAWNRQQITEASTKEIILGTDTGQLHEMAVDEK------DKREKY 154 (936)
Q Consensus 93 ~Y~~~~~~------------k~k~L~klkg~~I~sVaw~~~~~~~~st~~iLiGt~~G~i~e~~i~~~------~~~~~~ 154 (936)
|-+..+.. .++.+..+.+..|+.|+=... ..++=|++|.||-.-.+.. +...+.
T Consensus 143 ~~wG~n~~GqLG~g~~~~~~~p~~v~~~~~~~i~~va~G~~--------hs~alt~~G~v~~wG~n~~GqlG~g~~~~~~ 214 (406)
T 4d9s_A 143 QSWGRNQNGQLGLGDTEDSLVPQKIQAFEGIRIKMVAAGAE--------HTAAVTEDGDLYGWGWGRYGNLGLGDRTDRL 214 (406)
T ss_dssp EEEECCTTSTTCSSSCCCEEEEEECGGGTTCCEEEEEECSS--------EEEEEETTSCEEEEECCTTSTTCSSSSCCEE
T ss_pred EEeCCCCCccCCCCCCCCcccceEecccCCCcEEEEecCCC--------eEEEEeCCCCEEEeeCCCCCCCCCCCCCCcC
Confidence 88864321 345566667778888876521 3344488999997654322 111111
Q ss_pred -eeEEeeeCCCCCceeeEEEEeeccCCCceEEEEEECCCeEEEEe
Q 002318 155 -IKLLFELNELPEAFMGLQMETASLSNGTRYYVMAVTPTRLYSFT 198 (936)
Q Consensus 155 -~k~v~~l~~~~~~I~gi~~~~~~~~~~~~~~i~ast~~rly~f~ 198 (936)
.+.+..+.. .+|..|.-- ....++++...++|.|-
T Consensus 215 ~p~~v~~~~~--~~i~~va~G-------~~ht~~l~~~G~v~~wG 250 (406)
T 4d9s_A 215 VPERVTSTGG--EKMSMVACG-------WRHTISVSYSGALYTYG 250 (406)
T ss_dssp EEEECCCSTT--CCEEEEEEC-------SSEEEEEETTCCEEEEE
T ss_pred ccEEecccCC--ceEEEEEEC-------CCcEEEEcCCCCEEEee
Confidence 111111211 234444331 24566668889999984
No 357
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=69.47 E-value=6.4 Score=35.94 Aligned_cols=49 Identities=8% Similarity=-0.024 Sum_probs=38.4
Q ss_pred HHHchhhHHHHHHhcCCh----hhHHHHHHHHHHHHHhcCCHHHHHHHHHHhc
Q 002318 370 VYLDMKEYAAALANCRDP----LQRDQVYLVQAEAAFATKDFHRAASFYAKIN 418 (936)
Q Consensus 370 ~ll~~~~f~~Al~~~~~~----~~~~~I~~~~~~~L~~~g~y~~Aa~~y~~~~ 418 (936)
.++..|+|++|+...+.. ..-..+....|.-++..|+|++|...|.+..
T Consensus 27 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al 79 (142)
T 2xcb_A 27 NQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGA 79 (142)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 477889999999987531 1224566778889999999999999998875
No 358
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=68.86 E-value=4.2 Score=33.27 Aligned_cols=49 Identities=16% Similarity=0.357 Sum_probs=35.7
Q ss_pred HHHchhhHHHHHHhcCCh----hhHHHHHHHHHHHHHhcCCHHHHHHHHHHhc
Q 002318 370 VYLDMKEYAAALANCRDP----LQRDQVYLVQAEAAFATKDFHRAASFYAKIN 418 (936)
Q Consensus 370 ~ll~~~~f~~Al~~~~~~----~~~~~I~~~~~~~L~~~g~y~~Aa~~y~~~~ 418 (936)
.++..|+|++|+...+.. ..-..+....|..++..|+|++|...|.+..
T Consensus 18 ~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~ 70 (91)
T 1na3_A 18 AYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKAL 70 (91)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 467778888888876531 1224567778888888999999988887764
No 359
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=68.24 E-value=35 Score=35.61 Aligned_cols=50 Identities=8% Similarity=0.082 Sum_probs=34.8
Q ss_pred HHHHchhhHHHHHHhcCC----------hhhHHHHHHHHHHHHHhcCCHHHHHHHHHHhc
Q 002318 369 KVYLDMKEYAAALANCRD----------PLQRDQVYLVQAEAAFATKDFHRAASFYAKIN 418 (936)
Q Consensus 369 ~~ll~~~~f~~Al~~~~~----------~~~~~~I~~~~~~~L~~~g~y~~Aa~~y~~~~ 418 (936)
.+|...|+|++|++.... +......+...|..+...|+|++|...|.+..
T Consensus 44 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al 103 (307)
T 2ifu_A 44 VAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKAS 103 (307)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 346667888888877542 12234566677778888889988888887764
No 360
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*
Probab=67.98 E-value=1.9e+02 Score=33.96 Aligned_cols=161 Identities=14% Similarity=0.159 Sum_probs=89.0
Q ss_pred ceeEEEEeCCEEEEEecC-----CeEEEEeC-CCCCceeeEcCC-CCCCccceeEEEeCCCCCeEEEEeecCCCc--cEE
Q 002318 23 VITCMSAGNDVIVLGTSK-----GWLIRHDF-GAGDSYDIDLSA-GRPGEQSIHKVFVDPGGSHCIATIVGSGGA--ETF 93 (936)
Q Consensus 23 ~i~~l~v~~n~l~l~~~~-----g~l~ridl-~~~~~~~~~l~~-~~~~~~~i~~i~lDp~G~hlli~~~~~~~g--~~~ 93 (936)
.+++..-.++.+++.... +.|+|.|. .+....-++... ...+...+..+-..|.|..++.+++.+|+. ..+
T Consensus 75 ~~~~p~~dG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lld~~~l~~~~~~~~~~~~~SPDg~~la~~~~~~G~~~~~i~ 154 (710)
T 2xdw_A 75 KYSCHFKKGKRYFYFYNTGLQNQRVLYVQDSLEGEARVFLDPNILSDDGTVALRGYAFSEDGEYFAYGLSASGSDWVTIK 154 (710)
T ss_dssp EECCCEEETTEEEEEEECSSCSSCEEEEESSTTSCCEEEECGGGGCTTSCEEEEEEEECTTSSEEEEEEEETTCSCEEEE
T ss_pred cCCCCEEECCEEEEEEEcCCceEEEEEEEcCCCCCcEEEECHHHhccCCCEEEEEEEECCCCCEEEEEEcCCCCceEEEE
Confidence 455556778888776643 37899988 443211111111 111223678888899999998887622111 445
Q ss_pred EEecCCCCceeccCCCCceEEEEEecCCCCCCCCcceEEEEcCCCc----------------EEEEEEecCCcccceeeE
Q 002318 94 YTHAKWSKPRVLSKLKGLVVNAVAWNRQQITEASTKEIILGTDTGQ----------------LHEMAVDEKDKREKYIKL 157 (936)
Q Consensus 94 Y~~~~~~k~k~L~klkg~~I~sVaw~~~~~~~~st~~iLiGt~~G~----------------i~e~~i~~~~~~~~~~k~ 157 (936)
-++....+...+. +.+..+.+++|.++ .+.|+.++.++. ||...+..... .-+.
T Consensus 155 v~d~~tg~~~~~~-~~~~~~~~~~wspD------g~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~t~~~---~~~~ 224 (710)
T 2xdw_A 155 FMKVDGAKELPDV-LERVKFSCMAWTHD------GKGMFYNAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQS---EDIL 224 (710)
T ss_dssp EEETTTTEEEEEE-EEEECSCCEEECTT------SSEEEEEECCCCSSCCSSSCCCCCCCCEEEEEETTSCGG---GCEE
T ss_pred EEECCCCCCCccc-ccCcccceEEEEeC------CCEEEEEEECCccccccccccccCCCCEEEEEECCCCcc---cceE
Confidence 5555554444321 12334678999843 236777776644 77766644311 1234
Q ss_pred EeeeCCCCCceeeEEEEeeccCCCceEEEEEEC-----CCeEEEEe
Q 002318 158 LFELNELPEAFMGLQMETASLSNGTRYYVMAVT-----PTRLYSFT 198 (936)
Q Consensus 158 v~~l~~~~~~I~gi~~~~~~~~~~~~~~i~ast-----~~rly~f~ 198 (936)
++..++.+..+.++.|. .+.+++++.+. ...+|.+.
T Consensus 225 v~~~~~~~~~~~~~~~S-----pDg~~l~~~~~~~~~~~~~l~~~d 265 (710)
T 2xdw_A 225 CAEFPDEPKWMGGAELS-----DDGRYVLLSIREGCDPVNRLWYCD 265 (710)
T ss_dssp EECCTTCTTCEEEEEEC-----TTSCEEEEEEECSSSSCCEEEEEE
T ss_pred EeccCCCCeEEEEEEEc-----CCCCEEEEEEEccCCCccEEEEEE
Confidence 55554323446777775 23356666653 45677554
No 361
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=67.76 E-value=8 Score=36.10 Aligned_cols=50 Identities=18% Similarity=0.075 Sum_probs=40.3
Q ss_pred HHHHchhhHHHHHHhcCCh----hhHHHHHHHHHHHHHhcCCHHHHHHHHHHhc
Q 002318 369 KVYLDMKEYAAALANCRDP----LQRDQVYLVQAEAAFATKDFHRAASFYAKIN 418 (936)
Q Consensus 369 ~~ll~~~~f~~Al~~~~~~----~~~~~I~~~~~~~L~~~g~y~~Aa~~y~~~~ 418 (936)
..++..|+|++|+++.+.. ..-..+....|.-++..|+|++|...|.+..
T Consensus 19 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 72 (164)
T 3sz7_A 19 NAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELAT 72 (164)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 3578889999999987632 1235678888999999999999999998875
No 362
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=67.43 E-value=45 Score=33.13 Aligned_cols=44 Identities=14% Similarity=0.058 Sum_probs=34.8
Q ss_pred hhHHHHHHhcC-----ChhhHHHHHHHHHHHHHhcCCHHHHHHHHHHhc
Q 002318 375 KEYAAALANCR-----DPLQRDQVYLVQAEAAFATKDFHRAASFYAKIN 418 (936)
Q Consensus 375 ~~f~~Al~~~~-----~~~~~~~I~~~~~~~L~~~g~y~~Aa~~y~~~~ 418 (936)
..|++|+++++ ++.....+....|..++..|+|++|...|.+..
T Consensus 22 ~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 70 (283)
T 3edt_B 22 PLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDAL 70 (283)
T ss_dssp HHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 46777777754 234567788899999999999999999988765
No 363
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=67.40 E-value=7.8 Score=33.94 Aligned_cols=49 Identities=12% Similarity=0.135 Sum_probs=38.4
Q ss_pred HHHchhhHHHHHHhcCC----hhhHHHHHHHHHHHHHhcCCHHHHHHHHHHhc
Q 002318 370 VYLDMKEYAAALANCRD----PLQRDQVYLVQAEAAFATKDFHRAASFYAKIN 418 (936)
Q Consensus 370 ~ll~~~~f~~Al~~~~~----~~~~~~I~~~~~~~L~~~g~y~~Aa~~y~~~~ 418 (936)
.++..|+|++|+++.+. ...-..+....|.-++..|+|++|...|.+..
T Consensus 25 ~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~ 77 (133)
T 2lni_A 25 ECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECI 77 (133)
T ss_dssp HHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 46788999999988652 11235677888999999999999999998865
No 364
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=67.40 E-value=8.3 Score=35.76 Aligned_cols=49 Identities=12% Similarity=0.030 Sum_probs=37.1
Q ss_pred HHHchhhHHHHHHhcCCh----hhHHHHHHHHHHHHHhcCCHHHHHHHHHHhc
Q 002318 370 VYLDMKEYAAALANCRDP----LQRDQVYLVQAEAAFATKDFHRAASFYAKIN 418 (936)
Q Consensus 370 ~ll~~~~f~~Al~~~~~~----~~~~~I~~~~~~~L~~~g~y~~Aa~~y~~~~ 418 (936)
.++..|+|++|+...+.. ..-..+....|.-++..|+|++|...|.+..
T Consensus 30 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al 82 (148)
T 2vgx_A 30 NQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGA 82 (148)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 477889999999886531 1223556678888899999999999998865
No 365
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=67.03 E-value=9.5 Score=33.00 Aligned_cols=50 Identities=10% Similarity=0.058 Sum_probs=38.8
Q ss_pred HHHHchhhHHHHHHhcCCh----hhHHHHHHHHHHHHHhcCCHHHHHHHHHHhc
Q 002318 369 KVYLDMKEYAAALANCRDP----LQRDQVYLVQAEAAFATKDFHRAASFYAKIN 418 (936)
Q Consensus 369 ~~ll~~~~f~~Al~~~~~~----~~~~~I~~~~~~~L~~~g~y~~Aa~~y~~~~ 418 (936)
..++..|+|++|+++.+.. ..-..+....|..++..|+|++|...|.+..
T Consensus 20 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~ 73 (131)
T 2vyi_A 20 NEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAI 73 (131)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHH
Confidence 3467789999999886531 1224677888999999999999999998865
No 366
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=66.59 E-value=1.5e+02 Score=34.36 Aligned_cols=152 Identities=12% Similarity=0.005 Sum_probs=83.8
Q ss_pred CCE-EEEEe-cCCeEEEEeCC--C-CCceeeEcCCCCCCccceeEEEeCCCCCeEEEEeec-------CCCccEEEEecC
Q 002318 31 NDV-IVLGT-SKGWLIRHDFG--A-GDSYDIDLSAGRPGEQSIHKVFVDPGGSHCIATIVG-------SGGAETFYTHAK 98 (936)
Q Consensus 31 ~n~-l~l~~-~~g~l~ridl~--~-~~~~~~~l~~~~~~~~~i~~i~lDp~G~hlli~~~~-------~~~g~~~Y~~~~ 98 (936)
++. |+++. .++.|+++|+. . .....+.-.........+..+..+|.|..++.++.. .+....|-++..
T Consensus 90 g~~~la~~~~~~~~l~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~i~~~~~~ 169 (662)
T 3azo_A 90 GGPLLVFTHFGDQRLYAFEPDAPGGAVPRPLTPVSAVGGGLRWADPVLLPERGEVWCMAEEFTGEGPSDVRRFLAAVPLD 169 (662)
T ss_dssp SSCEEEEEBTTTCCEEEECTTSTTCCCCEECSCCCCSTTCEEEEEEEEETTTTEEEEEEEEECSSSTTCEEEEEEEEETT
T ss_pred CCeEEEEEECCCCeEEEEcCCCCCCCCCEeccCCccCCCCccccCcEECCCCCEEEEEEecccCCCCCCceeEEEEEECC
Confidence 455 55544 36789999985 2 333332211000013567888899999999888761 001355556665
Q ss_pred C------CCceecc-CCCCceEEEEEecCCCCCCCCcceEEEEcCC--------CcEEEEEEecCCcccceeeEEeeeCC
Q 002318 99 W------SKPRVLS-KLKGLVVNAVAWNRQQITEASTKEIILGTDT--------GQLHEMAVDEKDKREKYIKLLFELNE 163 (936)
Q Consensus 99 ~------~k~k~L~-klkg~~I~sVaw~~~~~~~~st~~iLiGt~~--------G~i~e~~i~~~~~~~~~~k~v~~l~~ 163 (936)
. .+.+.|. .- ...+.+++|+++ .+.|+.+..+ ..|+...++.. +.....+.+..-.
T Consensus 170 ~~~~~~~~~~~~l~~~~-~~~~~~~~~SpD------G~~la~~~~~~~~~~~~~~~i~~~d~~~~-g~~~~~~~l~~~~- 240 (662)
T 3azo_A 170 GSAAADRSAVRELSDDA-HRFVTGPRLSPD------GRQAVWLAWDHPRMPWEGTELKTARVTED-GRFADTRTLLGGP- 240 (662)
T ss_dssp STTTTCGGGSEESSCSC-SSEECCCEECTT------SSEEEEEEECTTCCTTTCEEEEEEEECTT-SCEEEEEEEEEET-
T ss_pred CCccccCCceeEEEecC-CCcccCceECCC------CCEEEEEECCCCCCCCCCcEEEEEEECCC-CcccccEEeCCCC-
Confidence 5 4566665 32 347888999843 2356655533 36887777631 1011234443322
Q ss_pred CCCceeeEEEEeeccCCCceEEEEEEC-CC--eEEEEe
Q 002318 164 LPEAFMGLQMETASLSNGTRYYVMAVT-PT--RLYSFT 198 (936)
Q Consensus 164 ~~~~I~gi~~~~~~~~~~~~~~i~ast-~~--rly~f~ 198 (936)
.+.+.++.|.. +.+ +++++. .. +||.+.
T Consensus 241 -~~~~~~~~~sp-----dg~-l~~~~~~~~~~~l~~~~ 271 (662)
T 3azo_A 241 -EEAIAQAEWAP-----DGS-LIVATDRTGWWNLHRVD 271 (662)
T ss_dssp -TBCEEEEEECT-----TSC-EEEEECTTSSCEEEEEC
T ss_pred -CceEcceEECC-----CCe-EEEEECCCCCeEEEEEE
Confidence 24577887762 224 445454 23 788775
No 367
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Probab=66.57 E-value=67 Score=38.00 Aligned_cols=137 Identities=9% Similarity=0.034 Sum_probs=75.9
Q ss_pred eEEEEeCC--EEEEEecCCe-------------EEEEeC-CCCCceeeEcCCCCCCccceeEEEeCCCCCeEEEEeecC-
Q 002318 25 TCMSAGND--VIVLGTSKGW-------------LIRHDF-GAGDSYDIDLSAGRPGEQSIHKVFVDPGGSHCIATIVGS- 87 (936)
Q Consensus 25 ~~l~v~~n--~l~l~~~~g~-------------l~ridl-~~~~~~~~~l~~~~~~~~~i~~i~lDp~G~hlli~~~~~- 87 (936)
..++.+++ .++.+...+. |+++++ .+......-... ......+..+..+|.|.++++++...
T Consensus 171 ~~~~wspDg~~l~~~~~d~~~~~~~~~~~~~~~v~~~~l~t~~~~~~lv~~~-~~~~~~~~~~~~SpDG~~l~~~~~~~~ 249 (695)
T 2bkl_A 171 ATPKWTPDSKGFYYEWLPTDPSIKVDERPGYTTIRYHTLGTEPSKDTVVHER-TGDPTTFLQSDLSRDGKYLFVYILRGW 249 (695)
T ss_dssp CCCEECTTSSEEEEEECCCCTTSCGGGGGGGCEEEEEETTSCGGGCEEEECC-CCCTTCEEEEEECTTSCCEEEEEEETT
T ss_pred cceEEecCCCEEEEEEecCCCCCccccCCCCCEEEEEECCCCchhceEEEec-CCCCEEEEEEEECCCCCEEEEEEeCCC
Confidence 45666644 6777765444 999999 443211121111 11124677888999999999887621
Q ss_pred CCccEEEEecCCCCceeccCCCCceEEEEEecCCCCCCCCcceEEEEcC----CCcEEEEEEecCCcccceeeEEeeeCC
Q 002318 88 GGAETFYTHAKWSKPRVLSKLKGLVVNAVAWNRQQITEASTKEIILGTD----TGQLHEMAVDEKDKREKYIKLLFELNE 163 (936)
Q Consensus 88 ~~g~~~Y~~~~~~k~k~L~klkg~~I~sVaw~~~~~~~~st~~iLiGt~----~G~i~e~~i~~~~~~~~~~k~v~~l~~ 163 (936)
++.+.|++.....+.+.|..-.+ .+.+..|. ..+ +++.|+ ++.|+...+... ....++.+..-..
T Consensus 250 ~~~~l~~~~~~~~~~~~l~~~~~-~~~~~~~~-------~g~-l~~~s~~~~~~~~l~~~d~~~~--~~~~~~~l~~~~~ 318 (695)
T 2bkl_A 250 SENDVYWKRPGEKDFRLLVKGVG-AKYEVHAW-------KDR-FYVLTDEGAPRQRVFEVDPAKP--ARASWKEIVPEDS 318 (695)
T ss_dssp TEEEEEEECTTCSSCEEEEECSS-CCEEEEEE-------TTE-EEEEECTTCTTCEEEEEBTTBC--SGGGCEEEECCCS
T ss_pred CceEEEEEcCCCCceEEeecCCC-ceEEEEec-------CCc-EEEEECCCCCCCEEEEEeCCCC--CccCCeEEecCCC
Confidence 12266777544445666654333 44556664 123 777775 477887766432 1122455532211
Q ss_pred CCCceeeEEEE
Q 002318 164 LPEAFMGLQME 174 (936)
Q Consensus 164 ~~~~I~gi~~~ 174 (936)
...|.++.+.
T Consensus 319 -~~~l~~~~~~ 328 (695)
T 2bkl_A 319 -SASLLSVSIV 328 (695)
T ss_dssp -SCEEEEEEEE
T ss_pred -CCeEEEEEEE
Confidence 1347777765
No 368
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=66.47 E-value=1.2e+02 Score=30.98 Aligned_cols=21 Identities=10% Similarity=0.040 Sum_probs=16.0
Q ss_pred HHHHHHHhcccHHHHHHHHhC
Q 002318 539 IVVHHYIQQGEAKKALQMLRK 559 (936)
Q Consensus 539 ~ll~~yi~~~~~~~AL~~L~~ 559 (936)
.+...|...|+|++|++++.+
T Consensus 201 nlg~~y~~~~~y~~A~~~~~~ 221 (293)
T 3u3w_A 201 NHAKALYLDSRYEESLYQVNK 221 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHH
Confidence 366678888898888887653
No 369
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=66.23 E-value=7 Score=35.15 Aligned_cols=25 Identities=12% Similarity=0.145 Sum_probs=12.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHh
Q 002318 393 VYLVQAEAAFATKDFHRAASFYAKI 417 (936)
Q Consensus 393 I~~~~~~~L~~~g~y~~Aa~~y~~~ 417 (936)
++...|..+...|+|++|.+.|.+.
T Consensus 85 ~~~~lg~~~~~~~~~~~A~~~~~ka 109 (127)
T 4gcn_A 85 AMSRAGNAFQKQNDLSLAVQWFHRS 109 (127)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 4444455555555555555555443
No 370
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=66.10 E-value=5.1 Score=34.12 Aligned_cols=49 Identities=14% Similarity=0.063 Sum_probs=35.8
Q ss_pred HHHchhhHHHHHHhcCCh----hhHHHHHHHHHHHHHhcCCHHHHHHHHHHhc
Q 002318 370 VYLDMKEYAAALANCRDP----LQRDQVYLVQAEAAFATKDFHRAASFYAKIN 418 (936)
Q Consensus 370 ~ll~~~~f~~Al~~~~~~----~~~~~I~~~~~~~L~~~g~y~~Aa~~y~~~~ 418 (936)
.++..|+|++|++..+.. ..-..+....|.-++..|+|++|...|.+..
T Consensus 13 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al 65 (111)
T 2l6j_A 13 SLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGL 65 (111)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 467788888888876531 1224567778888888889998888888765
No 371
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=66.07 E-value=10 Score=32.40 Aligned_cols=49 Identities=16% Similarity=0.357 Sum_probs=37.9
Q ss_pred HHHchhhHHHHHHhcCCh----hhHHHHHHHHHHHHHhcCCHHHHHHHHHHhc
Q 002318 370 VYLDMKEYAAALANCRDP----LQRDQVYLVQAEAAFATKDFHRAASFYAKIN 418 (936)
Q Consensus 370 ~ll~~~~f~~Al~~~~~~----~~~~~I~~~~~~~L~~~g~y~~Aa~~y~~~~ 418 (936)
.+...|+|++|+++.+.. ..-..+....|..++..|+|++|...|.+..
T Consensus 18 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~ 70 (125)
T 1na0_A 18 AYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKAL 70 (125)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 467789999999886531 1224567788999999999999999988764
No 372
>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}
Probab=65.16 E-value=46 Score=34.26 Aligned_cols=108 Identities=7% Similarity=-0.002 Sum_probs=63.8
Q ss_pred hhcCCCceeEEEEe--CCEEEE-EecCCeEEEEeCCCCCceeeEcCCCCCCccceeEEEeCCCCCeEEEEeecCCCccEE
Q 002318 17 AAKGRGVITCMSAG--NDVIVL-GTSKGWLIRHDFGAGDSYDIDLSAGRPGEQSIHKVFVDPGGSHCIATIVGSGGAETF 93 (936)
Q Consensus 17 ~~~~~~~i~~l~v~--~n~l~l-~~~~g~l~ridl~~~~~~~~~l~~~~~~~~~i~~i~lDp~G~hlli~~~~~~~g~~~ 93 (936)
.+.-.+.++.++.. ++.||. .-.++.|+++|+...-...+++. +..-...|-.++.|. ++|+.. +++..|
T Consensus 22 l~g~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~g~v~~~i~l~----g~~D~EGIa~~~~g~-~~vs~E--~~~~l~ 94 (255)
T 3qqz_A 22 IAGITNNISSLTWSAQSNTLFSTINKPAAIVEMTTNGDLIRTIPLD----FVKDLETIEYIGDNQ-FVISDE--RDYAIY 94 (255)
T ss_dssp CTTCCSCEEEEEEETTTTEEEEEEETTEEEEEEETTCCEEEEEECS----SCSSEEEEEECSTTE-EEEEET--TTTEEE
T ss_pred CCCcccCcceeEEeCCCCEEEEEECCCCeEEEEeCCCCEEEEEecC----CCCChHHeEEeCCCE-EEEEEC--CCCcEE
Confidence 34444679999998 567765 66789999999974444556553 224578888888885 444443 144444
Q ss_pred EEecCCCC-ce-------ec-cCCCCceEEEEEecCCCCCCCCcceEEEEcCC
Q 002318 94 YTHAKWSK-PR-------VL-SKLKGLVVNAVAWNRQQITEASTKEIILGTDT 137 (936)
Q Consensus 94 Y~~~~~~k-~k-------~L-~klkg~~I~sVaw~~~~~~~~st~~iLiGt~~ 137 (936)
-++..... .+ .+ ..-++...+.+||++. ++.+.+...+
T Consensus 95 ~~~v~~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~------~~~L~va~E~ 141 (255)
T 3qqz_A 95 VISLTPNSEVKILKKIKIPLQESPTNCGFEGLAYSRQ------DHTFWFFKEK 141 (255)
T ss_dssp EEEECTTCCEEEEEEEECCCSSCCCSSCCEEEEEETT------TTEEEEEEES
T ss_pred EEEcCCCCeeeeeeeeccccccccccCCcceEEEeCC------CCEEEEEECc
Confidence 44322211 11 11 1124566899999932 3366665444
No 373
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=64.95 E-value=1.6e+02 Score=32.00 Aligned_cols=49 Identities=12% Similarity=0.003 Sum_probs=36.6
Q ss_pred HHHchhhHHHHHHhcCChh-------------hHHHHHHHHHHHHHhcCCHHHHHHHHHHhc
Q 002318 370 VYLDMKEYAAALANCRDPL-------------QRDQVYLVQAEAAFATKDFHRAASFYAKIN 418 (936)
Q Consensus 370 ~ll~~~~f~~Al~~~~~~~-------------~~~~I~~~~~~~L~~~g~y~~Aa~~y~~~~ 418 (936)
++..+|+|++|++..+... .........|.-++..|+|++|...|.+..
T Consensus 60 ~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~ 121 (472)
T 4g1t_A 60 LKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVK 121 (472)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHH
Confidence 4677899999998864311 123445678889999999999999888764
No 374
>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*
Probab=64.86 E-value=1.3 Score=35.22 Aligned_cols=35 Identities=14% Similarity=0.172 Sum_probs=24.2
Q ss_pred ccccccccchhhhhcccccccccccCCCCCCCCEEEEcCCCh-hHHHhHHHHH
Q 002318 832 RDEDCGVCRRKILVAGRDYRMARGYASVGPMAPFYVFPCGHA-FHAQCLIAHV 883 (936)
Q Consensus 832 ~~~~C~~C~k~L~~~~~~~~~~~~~~~~~~~~~fvvFpCgH~-fH~~CL~~~~ 883 (936)
....|.+|...... . .+++.||||. |-..|.....
T Consensus 6 ~~~~C~IC~~~~~~-----~------------~~~~~pCgH~~~C~~C~~~~~ 41 (63)
T 2vje_B 6 LLKPCSLCEKRPRD-----G------------NIIHGRTGHLVTCFHCARRLK 41 (63)
T ss_dssp GGSBCTTTSSSBSC-----E------------EEEETTEEEEEECHHHHHHHH
T ss_pred cCCCCcccCCcCCC-----e------------EEEecCCCCHhHHHHHHHHHH
Confidence 35679999865433 1 2233399998 9999998765
No 375
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=64.50 E-value=39 Score=38.89 Aligned_cols=109 Identities=10% Similarity=0.021 Sum_probs=64.1
Q ss_pred eEEEEeCC-EEEEEecCCeEEEEeCCCCCceeeEcCCCCCCccceeEEEeCCCCCeEEEEeec-CCCccEEEEecCCCCc
Q 002318 25 TCMSAGND-VIVLGTSKGWLIRHDFGAGDSYDIDLSAGRPGEQSIHKVFVDPGGSHCIATIVG-SGGAETFYTHAKWSKP 102 (936)
Q Consensus 25 ~~l~v~~n-~l~l~~~~g~l~ridl~~~~~~~~~l~~~~~~~~~i~~i~lDp~G~hlli~~~~-~~~g~~~Y~~~~~~k~ 102 (936)
.+++-.++ +++.....+.+.++|+...+...+.-. .. ..+..+|.|+.++.++.. ++.+..|-++....+.
T Consensus 115 ~~~s~dg~~~~~~s~~~~~~~l~d~~~g~~~~l~~~-----~~--~~~~~spDG~~la~~~~~~~~~~~i~~~d~~~g~~ 187 (582)
T 3o4h_A 115 LSGVDTGEAVVFTGATEDRVALYALDGGGLRELARL-----PG--FGFVSDIRGDLIAGLGFFGGGRVSLFTSNLSSGGL 187 (582)
T ss_dssp EEEEECSSCEEEEEECSSCEEEEEEETTEEEEEEEE-----SS--CEEEEEEETTEEEEEEEEETTEEEEEEEETTTCCC
T ss_pred eeeCCCCCeEEEEecCCCCceEEEccCCcEEEeecC-----CC--ceEEECCCCCEEEEEEEcCCCCeEEEEEcCCCCCc
Confidence 34444554 445555666677888832233222211 01 567789999999877761 1115566667666677
Q ss_pred eeccCCCCceEEEEEecCCCCCCCCcceEEEEcCCC--cEEEEEEec
Q 002318 103 RVLSKLKGLVVNAVAWNRQQITEASTKEIILGTDTG--QLHEMAVDE 147 (936)
Q Consensus 103 k~L~klkg~~I~sVaw~~~~~~~~st~~iLiGt~~G--~i~e~~i~~ 147 (936)
+.|..-. ..+.+++|.++ .+.|..+..+| .|+...++.
T Consensus 188 ~~l~~~~-~~~~~~~~SpD------G~~l~~~~~~~~~~i~~~d~~~ 227 (582)
T 3o4h_A 188 RVFDSGE-GSFSSASISPG------MKVTAGLETAREARLVTVDPRD 227 (582)
T ss_dssp EEECCSS-CEEEEEEECTT------SCEEEEEECSSCEEEEEECTTT
T ss_pred eEeecCC-CccccceECCC------CCEEEEccCCCeeEEEEEcCCC
Confidence 7776533 46799999953 12455445567 677665543
No 376
>3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha}
Probab=64.29 E-value=58 Score=35.41 Aligned_cols=102 Identities=12% Similarity=-0.030 Sum_probs=59.6
Q ss_pred CCEEEEEecCCeEEEEeC--CCCCceeeEcCCCCCCccceeEEEeCC-CCCeEEEEeecCCCc----cEEEEecCCCCce
Q 002318 31 NDVIVLGTSKGWLIRHDF--GAGDSYDIDLSAGRPGEQSIHKVFVDP-GGSHCIATIVGSGGA----ETFYTHAKWSKPR 103 (936)
Q Consensus 31 ~n~l~l~~~~g~l~ridl--~~~~~~~~~l~~~~~~~~~i~~i~lDp-~G~hlli~~~~~~~g----~~~Y~~~~~~k~k 103 (936)
.+.|++|+..| |++++- ....-..+... .....|+.|.+|| ...++.+.+. .| -.|+....-..-+
T Consensus 22 ~g~l~vgt~~G-l~~~~~~~~g~~W~~~~~~---~~~~~v~~i~~dp~~~~~l~~g~~---~g~~g~gl~~s~D~G~tW~ 94 (394)
T 3b7f_A 22 PVMLLVATIKG-AWFLASDPARRTWELRGPV---FLGHTIHHIVQDPREPERMLMAAR---TGHLGPTVFRSDDGGGNWT 94 (394)
T ss_dssp CCEEEEEETTE-EEEEEECTTSCSEEEEEEE---STTSEEEEEEECSSSTTCEEEEEE---C--CCEEEEEESSTTSCCE
T ss_pred CCEEEEEecCc-eEEEECCCCCCCceECCcc---CCCCceEEEEECCCCCCeEEEEec---CCCCCccEEEeCCCCCCce
Confidence 56899999998 555544 22333333211 1136799999999 3557888887 45 5666543221112
Q ss_pred ecc---CC----------CCceEEEEEecCCCCCCCCcceEEEEcCCCcEEEE
Q 002318 104 VLS---KL----------KGLVVNAVAWNRQQITEASTKEIILGTDTGQLHEM 143 (936)
Q Consensus 104 ~L~---kl----------kg~~I~sVaw~~~~~~~~st~~iLiGt~~G~i~e~ 143 (936)
.+. .+ ....|.+++.++.. ..+.+.+||..|-||..
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~----~~~~l~~g~~~ggl~~S 143 (394)
T 3b7f_A 95 EATRPPAFNKAPEGETGRVVDHVFWLTPGHAS----EPGTWYAGTSPQGLFRS 143 (394)
T ss_dssp ECSBCCCCCCCC----CCCCCEEEEEEECCTT----STTCEEEEEETTEEEEE
T ss_pred ECCccccCCCcccccccccccceeEEEeCCCC----CCCEEEEEecCCcEEEE
Confidence 211 11 11368889988421 13579999988777765
No 377
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=64.23 E-value=1.3e+02 Score=31.14 Aligned_cols=138 Identities=12% Similarity=0.022 Sum_probs=73.2
Q ss_pred ceeEEEEe--CCEEEEEecCCeEEEEeCCCCCceeeEcCCCCCCccceeEEEeCC-CCCeEEEEeec-------------
Q 002318 23 VITCMSAG--NDVIVLGTSKGWLIRHDFGAGDSYDIDLSAGRPGEQSIHKVFVDP-GGSHCIATIVG------------- 86 (936)
Q Consensus 23 ~i~~l~v~--~n~l~l~~~~g~l~ridl~~~~~~~~~l~~~~~~~~~i~~i~lDp-~G~hlli~~~~------------- 86 (936)
....+++. ++.||++...+.|+++|.....+..+.-..........+.+.+|| .|. +.++...
T Consensus 81 ~p~gi~~~~~~g~l~v~d~~~~i~~~d~~~g~~~~~~~~~~~~~~~~p~~i~~d~~~G~-l~v~d~~~~~~~~~~~~~~~ 159 (322)
T 2fp8_A 81 RTYDISYNLQNNQLYIVDCYYHLSVVGSEGGHATQLATSVDGVPFKWLYAVTVDQRTGI-VYFTDVSTLYDDRGVQQIMD 159 (322)
T ss_dssp CEEEEEEETTTTEEEEEETTTEEEEECTTCEECEEEESEETTEECSCEEEEEECTTTCC-EEEEESCSSCCTTCHHHHHH
T ss_pred CCceEEEcCCCCcEEEEECCCCEEEEeCCCCEEEEecccCCCCcccccceEEEecCCCE-EEEECCcccccccccceehc
Confidence 35788888 589999987777999998322232221110000113568899999 894 6665431
Q ss_pred --CCCccEEEEecCCCCceeccCCCCceEEEEEecCCCCCCCCcceEEEE-cCCCcEEEEEEecCCcccceeeEEeeeCC
Q 002318 87 --SGGAETFYTHAKWSKPRVLSKLKGLVVNAVAWNRQQITEASTKEIILG-TDTGQLHEMAVDEKDKREKYIKLLFELNE 163 (936)
Q Consensus 87 --~~~g~~~Y~~~~~~k~k~L~klkg~~I~sVaw~~~~~~~~st~~iLiG-t~~G~i~e~~i~~~~~~~~~~k~v~~l~~ 163 (936)
..+|..|.+.....+.+.+.. ....-..|+|++. .+.+.+. +.++.|+.+.+.... ....+.+.+++
T Consensus 160 ~~~~~g~v~~~d~~~~~~~~~~~-~~~~p~gia~~~d------g~~lyv~d~~~~~I~~~~~~~~~--~~~~~~~~~~~- 229 (322)
T 2fp8_A 160 TSDKTGRLIKYDPSTKETTLLLK-ELHVPGGAEVSAD------SSFVLVAEFLSHQIVKYWLEGPK--KGTAEVLVKIP- 229 (322)
T ss_dssp HTCCCEEEEEEETTTTEEEEEEE-EESCCCEEEECTT------SSEEEEEEGGGTEEEEEESSSTT--TTCEEEEEECS-
T ss_pred ccCCCceEEEEeCCCCEEEEecc-CCccCcceEECCC------CCEEEEEeCCCCeEEEEECCCCc--CCccceEEeCC-
Confidence 012556666554333332211 0012335677732 1245565 556778887765421 11122322333
Q ss_pred CCCceeeEEEE
Q 002318 164 LPEAFMGLQME 174 (936)
Q Consensus 164 ~~~~I~gi~~~ 174 (936)
+ ..||.+.
T Consensus 230 --g-P~gi~~d 237 (322)
T 2fp8_A 230 --N-PGNIKRN 237 (322)
T ss_dssp --S-EEEEEEC
T ss_pred --C-CCCeEEC
Confidence 4 5787765
No 378
>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A
Probab=63.90 E-value=2.2 Score=33.93 Aligned_cols=34 Identities=18% Similarity=0.235 Sum_probs=24.1
Q ss_pred ccccccccchhhhhcccccccccccCCCCCCCCEEEE--cCCCh-hHHHhHHHHHh
Q 002318 832 RDEDCGVCRRKILVAGRDYRMARGYASVGPMAPFYVF--PCGHA-FHAQCLIAHVT 884 (936)
Q Consensus 832 ~~~~C~~C~k~L~~~~~~~~~~~~~~~~~~~~~fvvF--pCgH~-fH~~CL~~~~~ 884 (936)
.+..|.+|...... .++. ||||. |-..|+.....
T Consensus 7 ~~~~C~IC~~~~~~-------------------~~~~~~pCgH~~~C~~C~~~~~~ 43 (64)
T 2vje_A 7 AIEPCVICQGRPKN-------------------GCIVHGKTGHLMACFTCAKKLKK 43 (64)
T ss_dssp GGSCCTTTSSSCSC-------------------EEEEETTEEEEEECHHHHHHHHH
T ss_pred CcCCCCcCCCCCCC-------------------EEEECCCCCChhhHHHHHHHHHH
Confidence 45679999865433 2333 99999 67999987653
No 379
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=63.80 E-value=4.9 Score=35.29 Aligned_cols=30 Identities=13% Similarity=0.138 Sum_probs=18.9
Q ss_pred hHHHHHHHHHHHHHhcCCHHHHHHHHHHhc
Q 002318 389 QRDQVYLVQAEAAFATKDFHRAASFYAKIN 418 (936)
Q Consensus 389 ~~~~I~~~~~~~L~~~g~y~~Aa~~y~~~~ 418 (936)
....+....|.-++..|+|++|...|.+..
T Consensus 25 ~~~~~~~~lg~~~~~~~~~~~A~~~~~~al 54 (117)
T 3k9i_A 25 DLAECYLGLGSTFRTLGEYRKAEAVLANGV 54 (117)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 344556666666666667776666666653
No 380
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=63.72 E-value=31 Score=39.72 Aligned_cols=44 Identities=16% Similarity=0.060 Sum_probs=21.7
Q ss_pred hhHHHHHHhcCCh----hhHHHHHHHHHHHHHhcCCHHHHHHHHHHhc
Q 002318 375 KEYAAALANCRDP----LQRDQVYLVQAEAAFATKDFHRAASFYAKIN 418 (936)
Q Consensus 375 ~~f~~Al~~~~~~----~~~~~I~~~~~~~L~~~g~y~~Aa~~y~~~~ 418 (936)
|++++|++..+.. ..-.......|..++..|+|++|.+.|.+..
T Consensus 3 g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al 50 (568)
T 2vsy_A 3 ADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGL 50 (568)
T ss_dssp ------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 5667777665531 1223566677778888888888888887765
No 381
>3qil_A Clathrin heavy chain 1; clathrin trimerization domain, endocytosis, structural prote; 3.92A {Bos taurus}
Probab=63.65 E-value=1.1 Score=40.32 Aligned_cols=103 Identities=18% Similarity=0.153 Sum_probs=55.2
Q ss_pred hhhhccccHHHHHHHHHh-cCHHHHHHHhhccCCCHHHHHHHHHHHHHHHhhcccCCChHhHHHHHHHHHhcCCcccccc
Q 002318 692 HIYGMMSMHEEAVALALQ-VDPELAMAEADKVEDDEDLRKKLWLMVAKHVIEQEKGTKRENIRKAIAFLKETDGLLKIED 770 (936)
Q Consensus 692 ~L~~~~g~~~eAl~l~l~-~di~lA~~~a~~~~~d~~~~kkLWl~ll~~~i~~~~~~~~~~i~~~l~~L~~~~~~L~i~d 770 (936)
.+|.+.+.|++||.+.-+ +....|+++|.... |.+ +=..|+++++...+ ..+ ....|-.|-.+|...-
T Consensus 14 ~~ykkN~rw~qSI~L~KkDkLykDAietAa~S~-d~e----laEeLL~yFVe~g~----kEc--F~A~LytCYdLlrpDv 82 (125)
T 3qil_A 14 LVPRGSHMWKQSVELAKKDSLYKDAMQYASESK-DTE----LAEELLQWFLQEEK----REC--FGACLFTCYDLLRPDV 82 (125)
T ss_dssp CCSSSCCCCSSCCCCCSCCCCSSHHHHTTTSSC-CSH----HHHHHHHHHTTSCS----HHH--HHHHHHHHTTCSCTTH
T ss_pred chhhccccHHHHHHHHHhcccHHHHHHHHHHcC-CHH----HHHHHHHHHHHcCc----hHH--HHHHHHHHHhccChHH
Confidence 345666666666666555 44666777774433 444 66778888887632 111 1223333433444433
Q ss_pred ccCcCCCCcchhHHHHHHHHHHHHHHHHHHHHHHH
Q 002318 771 ILPFFPDFALIDDFKEAICSSLDDYNKQIEQLKQE 805 (936)
Q Consensus 771 iL~~~p~~~~I~~~Kd~I~~~L~~y~~~i~~l~~~ 805 (936)
+|.+-=-+--.+-...+++..+++|..+++.+...
T Consensus 83 VLElaWr~~l~Df~mPY~Iqv~re~~~kv~~L~~~ 117 (125)
T 3qil_A 83 VLELAWRHNIMDFAMPYFIQVMKEYLTKVDKLDAS 117 (125)
T ss_dssp HHHTTSSSSCCCCCCCSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhccccccchhHHHHHHHHHHHHHHHHHH
Confidence 44331000011222346678889999988876643
No 382
>3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha}
Probab=63.58 E-value=77 Score=34.35 Aligned_cols=114 Identities=12% Similarity=0.209 Sum_probs=68.0
Q ss_pred CceeEEEEe---CCEEEEEecCC----eEEEEeCCCCCceeeEcCC--CCC-------CccceeEEEeCCC--CCeEEEE
Q 002318 22 GVITCMSAG---NDVIVLGTSKG----WLIRHDFGAGDSYDIDLSA--GRP-------GEQSIHKVFVDPG--GSHCIAT 83 (936)
Q Consensus 22 ~~i~~l~v~---~n~l~l~~~~g----~l~ridl~~~~~~~~~l~~--~~~-------~~~~i~~i~lDp~--G~hlli~ 83 (936)
..|.+|++. ++.||+|+..| .|+|.+-....-..+..+. ... ....|..|.+||. ..++.+.
T Consensus 55 ~~v~~i~~dp~~~~~l~~g~~~g~~g~gl~~s~D~G~tW~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~l~~g 134 (394)
T 3b7f_A 55 HTIHHIVQDPREPERMLMAARTGHLGPTVFRSDDGGGNWTEATRPPAFNKAPEGETGRVVDHVFWLTPGHASEPGTWYAG 134 (394)
T ss_dssp SEEEEEEECSSSTTCEEEEEEC--CCEEEEEESSTTSCCEECSBCCCCCCCC----CCCCCEEEEEEECCTTSTTCEEEE
T ss_pred CceEEEEECCCCCCeEEEEecCCCCCccEEEeCCCCCCceECCccccCCCcccccccccccceeEEEeCCCCCCCEEEEE
Confidence 468999997 68999999998 8998754333333333221 000 0125777888984 5678877
Q ss_pred eecCCCccEEEEec---CCCCceecc---------------CCCCceEEEEEecCCCCCCCCcceEEEEcCCCcEEEE
Q 002318 84 IVGSGGAETFYTHA---KWSKPRVLS---------------KLKGLVVNAVAWNRQQITEASTKEIILGTDTGQLHEM 143 (936)
Q Consensus 84 ~~~~~~g~~~Y~~~---~~~k~k~L~---------------klkg~~I~sVaw~~~~~~~~st~~iLiGt~~G~i~e~ 143 (936)
+. .|-.|.... .+.+...+. -..+..|.+|+.++. +.+.+.+|+..|-||..
T Consensus 135 ~~---~ggl~~S~DgG~tW~~~~~~~~~p~~~~~~~~~~~g~~~~~~i~~i~~d~~-----~~~~l~vg~~~ggl~~s 204 (394)
T 3b7f_A 135 TS---PQGLFRSTDHGASWEPVAGFNDHPMRRAWTGGEQDGTPDGPKMHSILVDPR-----DPKHLYIGMSSGGVFES 204 (394)
T ss_dssp EE---TTEEEEESSTTSBCEECHHHHTCTTHHHHHCCC----CCCCEEEEEEECTT-----CTTCEEEEEETBEEEEE
T ss_pred ec---CCcEEEEcCCCCCeEECcCccCCccccccccccccCCCCCCceeEEEECCC-----CCCEEEEEECCCCEEEE
Confidence 76 566655542 222221110 012357889998842 23478999887767765
No 383
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=63.24 E-value=2.1e+02 Score=32.64 Aligned_cols=153 Identities=11% Similarity=0.118 Sum_probs=86.2
Q ss_pred eeEEEEeC--CEEEEEecCCeEEEEeCCCCCce-eeEcCCCCCCccceeEEEeCC----CCCeEEEEeecCCCccEEEEe
Q 002318 24 ITCMSAGN--DVIVLGTSKGWLIRHDFGAGDSY-DIDLSAGRPGEQSIHKVFVDP----GGSHCIATIVGSGGAETFYTH 96 (936)
Q Consensus 24 i~~l~v~~--n~l~l~~~~g~l~ridl~~~~~~-~~~l~~~~~~~~~i~~i~lDp----~G~hlli~~~~~~~g~~~Y~~ 96 (936)
+.+++++. +.++.+-..|+|..||+.+.... .-.++. ...+..+-++| .|.+++++... ++.+.-+.
T Consensus 181 ~~~v~~spdg~~l~v~~~d~~V~v~D~~~~t~~~~~~i~~----g~~p~~va~sp~~~~dg~~l~v~~~~--~~~v~v~D 254 (543)
T 1nir_A 181 VHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKI----GIEARSVESSKFKGYEDRYTIAGAYW--PPQFAIMD 254 (543)
T ss_dssp EEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEEC----CSEEEEEEECCSTTCTTTEEEEEEEE--SSEEEEEE
T ss_pred cceEEECCCCCEEEEECCCCeEEEEECcCCCCcEEEEEec----CCCcceEEeCCCcCCCCCEEEEEEcc--CCeEEEEe
Confidence 56777764 58999999999999999311111 112331 23568999999 99999888641 46665566
Q ss_pred cCCCCceeccCCCC-----------ceEEEEEecCCCCCCCCcceEEE-EcCCCcEEEEEEecCCcccceeeEEeeeCCC
Q 002318 97 AKWSKPRVLSKLKG-----------LVVNAVAWNRQQITEASTKEIIL-GTDTGQLHEMAVDEKDKREKYIKLLFELNEL 164 (936)
Q Consensus 97 ~~~~k~k~L~klkg-----------~~I~sVaw~~~~~~~~st~~iLi-Gt~~G~i~e~~i~~~~~~~~~~k~v~~l~~~ 164 (936)
....++...-...| -.+.+|++.+. .+.+++ +..+|.|........+ .++ +..++.
T Consensus 255 ~~t~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~------~~~~~vs~~~~g~i~vvd~~~~~----~l~-~~~i~~- 322 (543)
T 1nir_A 255 GETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHE------HPEFIVNVKETGKVLLVNYKDID----NLT-VTSIGA- 322 (543)
T ss_dssp TTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSS------SSEEEEEETTTTEEEEEECTTSS----SCE-EEEEEC-
T ss_pred ccccccceeecccCcccCccccccCCceEEEEECCC------CCEEEEEECCCCeEEEEEecCCC----cce-eEEecc-
Confidence 55443322111111 25778888742 124444 3456888777654321 122 112221
Q ss_pred CCceeeEEEEeeccCCCceEEEEEEC-CCeEEEEec
Q 002318 165 PEAFMGLQMETASLSNGTRYYVMAVT-PTRLYSFTG 199 (936)
Q Consensus 165 ~~~I~gi~~~~~~~~~~~~~~i~ast-~~rly~f~~ 199 (936)
...+.++.|. .+.++++.++. ...+.-|.-
T Consensus 323 ~~~~~~~~~s-----pdg~~l~va~~~~~~v~v~D~ 353 (543)
T 1nir_A 323 APFLHDGGWD-----SSHRYFMTAANNSNKVAVIDS 353 (543)
T ss_dssp CSSCCCEEEC-----TTSCEEEEEEGGGTEEEEEET
T ss_pred CcCccCceEC-----CCCCEEEEEecCCCeEEEEEC
Confidence 1346777775 23356655553 556665643
No 384
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=63.18 E-value=5.8 Score=35.70 Aligned_cols=46 Identities=22% Similarity=0.312 Sum_probs=23.3
Q ss_pred HHchhhHHHHHHhcCC-----hhhHHHHHHHHHHHHHhcCCHHHHHHHHHHh
Q 002318 371 YLDMKEYAAALANCRD-----PLQRDQVYLVQAEAAFATKDFHRAASFYAKI 417 (936)
Q Consensus 371 ll~~~~f~~Al~~~~~-----~~~~~~I~~~~~~~L~~~g~y~~Aa~~y~~~ 417 (936)
++++|+|++|++.-+. |. -..++...|.-++..|+|++|.+.|.+.
T Consensus 18 ~~~~~~~~~A~~~y~~Al~~~p~-~~~~~~nlg~~~~~~~~~~~A~~~~~~a 68 (127)
T 4gcn_A 18 AYKQKDFEKAHVHYDKAIELDPS-NITFYNNKAAVYFEEKKFAECVQFCEKA 68 (127)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhCCC-CHHHHHhHHHHHHHhhhHHHHHHHHHHH
Confidence 4555556655555331 11 1234444555555566666665555544
No 385
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=63.06 E-value=59 Score=37.27 Aligned_cols=138 Identities=11% Similarity=0.058 Sum_probs=78.7
Q ss_pred EEeCCEEEEEecC----CeEEEEeCCCCCceeeEcCCCCCCccceeEEEeCCCCCeEEEEeecCCCc--cEEEEecCCCC
Q 002318 28 SAGNDVIVLGTSK----GWLIRHDFGAGDSYDIDLSAGRPGEQSIHKVFVDPGGSHCIATIVGSGGA--ETFYTHAKWSK 101 (936)
Q Consensus 28 ~v~~n~l~l~~~~----g~l~ridl~~~~~~~~~l~~~~~~~~~i~~i~lDp~G~hlli~~~~~~~g--~~~Y~~~~~~k 101 (936)
.-.++.++.+... +.|+++|+...+...+ .. ....+..+-..|.|+.++.+.. +| ..|-++....+
T Consensus 158 spDG~~la~~~~~~~~~~~i~~~d~~~g~~~~l--~~---~~~~~~~~~~SpDG~~l~~~~~---~~~~~i~~~d~~~~~ 229 (582)
T 3o4h_A 158 DIRGDLIAGLGFFGGGRVSLFTSNLSSGGLRVF--DS---GEGSFSSASISPGMKVTAGLET---AREARLVTVDPRDGS 229 (582)
T ss_dssp EEETTEEEEEEEEETTEEEEEEEETTTCCCEEE--CC---SSCEEEEEEECTTSCEEEEEEC---SSCEEEEEECTTTCC
T ss_pred CCCCCEEEEEEEcCCCCeEEEEEcCCCCCceEe--ec---CCCccccceECCCCCEEEEccC---CCeeEEEEEcCCCCc
Confidence 3456778777665 7899999933334333 21 1356788899999999884444 55 55555555555
Q ss_pred ceeccCCCCceEEEEE--------ecCCCCCCCCcceEEEEcCCCcEEEEEEecCCcccceeeEEeeeCCCCCceeeEEE
Q 002318 102 PRVLSKLKGLVVNAVA--------WNRQQITEASTKEIILGTDTGQLHEMAVDEKDKREKYIKLLFELNELPEAFMGLQM 173 (936)
Q Consensus 102 ~k~L~klkg~~I~sVa--------w~~~~~~~~st~~iLiGt~~G~i~e~~i~~~~~~~~~~k~v~~l~~~~~~I~gi~~ 173 (936)
.+.+.. ....+.+++ |.++ ..-+..++.+|.+....+ +. .. ..+. +.|.++.+
T Consensus 230 ~~~~~~-~~~~~~~~~~~~~~~~~~spd------g~~~~~~~~~g~~~l~~~-g~------~~---~~~~--~~v~~~~~ 290 (582)
T 3o4h_A 230 VEDLEL-PSKDFSSYRPTAITWLGYLPD------GRLAVVARREGRSAVFID-GE------RV---EAPQ--GNHGRVVL 290 (582)
T ss_dssp EEECCC-SCSHHHHHCCSEEEEEEECTT------SCEEEEEEETTEEEEEET-TE------EE---CCCS--SEEEEEEE
T ss_pred EEEccC-CCcChhhhhhccccceeEcCC------CcEEEEEEcCCcEEEEEE-CC------ee---ccCC--CceEEEEe
Confidence 553332 233566666 8843 124455667786655555 21 11 1222 45777766
Q ss_pred EeeccCCCceEEEEEEC---CCeEEEEe
Q 002318 174 ETASLSNGTRYYVMAVT---PTRLYSFT 198 (936)
Q Consensus 174 ~~~~~~~~~~~~i~ast---~~rly~f~ 198 (936)
. ++ ++++.+++ |.++|.+.
T Consensus 291 s----dg--~~l~~~s~~~~p~~l~~~d 312 (582)
T 3o4h_A 291 W----RG--KLVTSHTSLSTPPRIVSLP 312 (582)
T ss_dssp E----TT--EEEEEEEETTEEEEEEEET
T ss_pred c----CC--EEEEEEcCCCCCCeEEEEc
Confidence 5 12 45555554 35677664
No 386
>4gz8_A Semaphorin-3A; multi-domain, cell-CELL signaling, plexin, glycosilate extracellular, signaling protein; HET: NAG BMA MAN; 3.30A {Mus musculus}
Probab=62.87 E-value=7 Score=46.34 Aligned_cols=60 Identities=12% Similarity=0.107 Sum_probs=42.7
Q ss_pred ceeEEEEeC--------CEEEEEecCCeEEEEeC-CCCC--------ceeeEcCCCCCCccceeEEEeCCCCCeEEEEee
Q 002318 23 VITCMSAGN--------DVIVLGTSKGWLIRHDF-GAGD--------SYDIDLSAGRPGEQSIHKVFVDPGGSHCIATIV 85 (936)
Q Consensus 23 ~i~~l~v~~--------n~l~l~~~~g~l~ridl-~~~~--------~~~~~l~~~~~~~~~i~~i~lDp~G~hlli~~~ 85 (936)
..|+++|.- .++++||.+|+|+++=+ .... ++++++-. ...+|..+-+|+.+.||+|.|.
T Consensus 413 ~lT~IaVd~v~~~~g~ytVlFLGT~~G~I~Kvv~~~~~~~~~~~~~~leEi~v~~---~~~pI~~L~ld~~~~~LYV~t~ 489 (667)
T 4gz8_A 413 QFTQIVVDRVDAEDGQYDVMFIGTDVGTVLKVVSVPKETWHDLEEVLLEEMTVFR---EPTTISAMELSTKQQQLYIGST 489 (667)
T ss_dssp CEEEEEEEEEECSSCEEEEEEEEETTSEEEEEEEEC------CEEEEEEEEECSS---SCCCCCEEEEETTTTEEEEEBS
T ss_pred ceeEEEEEEEecCCCcEEEEEEECCCCeEEEEEEcCCCCccccceEEEEEEeecC---CCceeeeEEEcCCCCEEEEEEC
Confidence 367888731 58999999999999854 2111 23444432 2368899999999999999987
No 387
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=62.86 E-value=2.1 Score=44.25 Aligned_cols=35 Identities=14% Similarity=0.343 Sum_probs=29.6
Q ss_pred cccccccchhhhhcccccccccccCCCCCCCCEEEEcCCChhHHHhHHHHHhh
Q 002318 833 DEDCGVCRRKILVAGRDYRMARGYASVGPMAPFYVFPCGHAFHAQCLIAHVTQ 885 (936)
Q Consensus 833 ~~~C~~C~k~L~~~~~~~~~~~~~~~~~~~~~fvvFpCgH~fH~~CL~~~~~~ 885 (936)
+-.|++|...+.. |+..-.|||+|-+.|+......
T Consensus 181 el~CPIcl~~f~D------------------PVts~~CGHsFcR~cI~~~~~~ 215 (267)
T 3htk_C 181 ELTCPITCKPYEA------------------PLISRKCNHVFDRDGIQNYLQG 215 (267)
T ss_dssp CSBCTTTSSBCSS------------------EEEESSSCCEEEHHHHHHHSTT
T ss_pred eeECcCccCcccC------------------CeeeCCCCCcccHHHHHHHHHh
Confidence 5689999998876 7766699999999999988754
No 388
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=62.57 E-value=53 Score=33.76 Aligned_cols=51 Identities=14% Similarity=0.046 Sum_probs=36.6
Q ss_pred HHHHHchhhHHHHHHhcCC--------hhhH--HHHHHHHHHHHHhcCCHHHHHHHHHHhc
Q 002318 368 WKVYLDMKEYAAALANCRD--------PLQR--DQVYLVQAEAAFATKDFHRAASFYAKIN 418 (936)
Q Consensus 368 W~~ll~~~~f~~Al~~~~~--------~~~~--~~I~~~~~~~L~~~g~y~~Aa~~y~~~~ 418 (936)
...++..|+|++|+++.+. +... ......-|..++..|+|++|...|.+..
T Consensus 82 i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al 142 (293)
T 3u3w_A 82 VIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLL 142 (293)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHH
Confidence 4457888999999998642 1212 2334456778888899999999998865
No 389
>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*
Probab=62.51 E-value=18 Score=36.64 Aligned_cols=101 Identities=10% Similarity=0.098 Sum_probs=59.8
Q ss_pred CceeEEEEe-CCEEEEEecCCeEEEEeC-CCCCceeeEcCCCCCCccce--------eEEEeCCCCCeEEEEeecCCCcc
Q 002318 22 GVITCMSAG-NDVIVLGTSKGWLIRHDF-GAGDSYDIDLSAGRPGEQSI--------HKVFVDPGGSHCIATIVGSGGAE 91 (936)
Q Consensus 22 ~~i~~l~v~-~n~l~l~~~~g~l~ridl-~~~~~~~~~l~~~~~~~~~i--------~~i~lDp~G~hlli~~~~~~~g~ 91 (936)
.++++|+.+ |+.||.+ .+|.|+++|. ......-+.. ...| .-+|+||+|...++ + +|.
T Consensus 41 ~~~~~laf~P~G~LYaV-~~G~Ly~~~~~t~~~~~W~~s------~t~IG~~Gw~~F~a~~fD~~G~LYav-~----dG~ 108 (236)
T 1tl2_A 41 SNFKFLFLSPGGELYGV-LNDKIYKGTPPTHDNDNWMGR------AKKIGNGGWNQFQFLFFDPNGYLYAV-S----KDK 108 (236)
T ss_dssp TTCSEEEECTTSCEEEE-ETTEEEEESCCCSTTCCHHHH------CEEEECSCGGGCSEEEECTTSCEEEE-E----TTE
T ss_pred ccceeEEECCCccEEEE-eCCeEEEECCCCCCccccccc------ccEecccccccceEEEECCCCCEEEe-C----CCE
Confidence 468899999 5677777 9999999997 2111111111 1233 67999999987777 4 598
Q ss_pred EEEEecCCCC-ceeccCCCCceEEEEEecCCCCCCCCcceEEEEcCCCcEEEEE
Q 002318 92 TFYTHAKWSK-PRVLSKLKGLVVNAVAWNRQQITEASTKEIILGTDTGQLHEMA 144 (936)
Q Consensus 92 ~~Y~~~~~~k-~k~L~klkg~~I~sVaw~~~~~~~~st~~iLiGt~~G~i~e~~ 144 (936)
.|-++...+. ..-|.. +-.|-.=.|. .-+.|..+.+|.||-..
T Consensus 109 iyr~~pP~~~~~~Wl~~--a~~vg~~gw~--------~~~~lff~p~G~Lyav~ 152 (236)
T 1tl2_A 109 LYKASPPQSDTDNWIAR--ATEVGSGGWS--------GFKFLFFHPNGYLYAVH 152 (236)
T ss_dssp EEEESCCCSTTCCHHHH--SEEEECSSGG--------GEEEEEECTTSCEEEEE
T ss_pred EEEeCCCcCCCCceecc--ccEeccCCCC--------ceEEEEECCCceEEEEe
Confidence 8877542211 111211 1222222454 12667777778887765
No 390
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=62.22 E-value=1.3e+02 Score=30.74 Aligned_cols=50 Identities=16% Similarity=0.068 Sum_probs=35.4
Q ss_pred HHHHchhhHHHHHHhcCC--------hh--hHHHHHHHHHHHHHhcCCHHHHHHHHHHhc
Q 002318 369 KVYLDMKEYAAALANCRD--------PL--QRDQVYLVQAEAAFATKDFHRAASFYAKIN 418 (936)
Q Consensus 369 ~~ll~~~~f~~Al~~~~~--------~~--~~~~I~~~~~~~L~~~g~y~~Aa~~y~~~~ 418 (936)
..++..|+|++|++..+. +. .........|..+...|+|++|...|.+..
T Consensus 83 ~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al 142 (293)
T 2qfc_A 83 IMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLL 142 (293)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHH
T ss_pred HHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHH
Confidence 357888999999887641 11 122334456778888999999999988764
No 391
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=62.14 E-value=72 Score=36.24 Aligned_cols=48 Identities=13% Similarity=0.191 Sum_probs=37.7
Q ss_pred HHchhhHHHHHHhcCC----------h--hhHHHHHHHHHHHHHhcCCHHHHHHHHHHhc
Q 002318 371 YLDMKEYAAALANCRD----------P--LQRDQVYLVQAEAAFATKDFHRAASFYAKIN 418 (936)
Q Consensus 371 ll~~~~f~~Al~~~~~----------~--~~~~~I~~~~~~~L~~~g~y~~Aa~~y~~~~ 418 (936)
+..+|+|++|+.+++. + .....++..-|.-+..+|+|++|..+|.++.
T Consensus 319 ~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL 378 (490)
T 3n71_A 319 ARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMV 378 (490)
T ss_dssp HHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 4467899999887642 1 2355677788888899999999999999886
No 392
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Probab=61.93 E-value=2e+02 Score=34.09 Aligned_cols=136 Identities=5% Similarity=-0.036 Sum_probs=74.2
Q ss_pred eEEEEeCC-EEEEEecCC--------------eEEEEeC-CCCCceeeEcCCCCCCccceeEEEeCCCCCeEEEEeecC-
Q 002318 25 TCMSAGND-VIVLGTSKG--------------WLIRHDF-GAGDSYDIDLSAGRPGEQSIHKVFVDPGGSHCIATIVGS- 87 (936)
Q Consensus 25 ~~l~v~~n-~l~l~~~~g--------------~l~ridl-~~~~~~~~~l~~~~~~~~~i~~i~lDp~G~hlli~~~~~- 87 (936)
..++.+++ .++.+...+ .|+++++ .+......-.... .....+..+..+|.|.++++.+...
T Consensus 212 ~~~~wspD~~l~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~lv~~~~-~~~~~~~~~~~SpDG~~l~~~~~~~~ 290 (741)
T 1yr2_A 212 SGLAWLGNDALLYSRFAEPKEGQAFQALNYNQTVWLHRLGTPQSADQPVFATP-ELPKRGHGASVSSDGRWVVITSSEGT 290 (741)
T ss_dssp CCCEESTTSEEEEEECCCC--------CCCCCEEEEEETTSCGGGCEEEECCT-TCTTCEEEEEECTTSCEEEEEEECTT
T ss_pred ccEEEECCCEEEEEEecCcccccccccCCCCCEEEEEECCCCchhCEEEeccC-CCCeEEEEEEECCCCCEEEEEEEccC
Confidence 34555553 555555433 4899999 3332112212211 1112477888999999999888621
Q ss_pred -CCccEEEEecCCC--C-ceeccCCCCceEEEEEecCCCCCCCCcceEEEEcCC----CcEEEEEEecCCcccceeeEEe
Q 002318 88 -GGAETFYTHAKWS--K-PRVLSKLKGLVVNAVAWNRQQITEASTKEIILGTDT----GQLHEMAVDEKDKREKYIKLLF 159 (936)
Q Consensus 88 -~~g~~~Y~~~~~~--k-~k~L~klkg~~I~sVaw~~~~~~~~st~~iLiGt~~----G~i~e~~i~~~~~~~~~~k~v~ 159 (936)
++.+.|++..... + .+.|..-.+. +.+..|. +.+.|++.|++ +.|+...++... ..++.++
T Consensus 291 ~~~~~l~~~d~~~~~~~~~~~l~~~~~~-~~~~~~~-------dg~~l~~~s~~~~~~~~l~~~d~~~~~---~~~~~l~ 359 (741)
T 1yr2_A 291 DPVNTVHVARVTNGKIGPVTALIPDLKA-QWDFVDG-------VGDQLWFVSGDGAPLKKIVRVDLSGST---PRFDTVV 359 (741)
T ss_dssp CSCCEEEEEEEETTEECCCEEEECSSSS-CEEEEEE-------ETTEEEEEECTTCTTCEEEEEECSSSS---CEEEEEE
T ss_pred CCcceEEEEECCCCCCcccEEecCCCCc-eEEEEec-------cCCEEEEEECCCCCCCEEEEEeCCCCc---cccEEEe
Confidence 1237777776554 4 5666543332 3344443 23478887764 458887765421 2355554
Q ss_pred eeCCCCCceeeEEEE
Q 002318 160 ELNELPEAFMGLQME 174 (936)
Q Consensus 160 ~l~~~~~~I~gi~~~ 174 (936)
++.+..+.++.+.
T Consensus 360 --~~~~~~l~~~~~~ 372 (741)
T 1yr2_A 360 --PESKDNLESVGIA 372 (741)
T ss_dssp --CCCSSEEEEEEEE
T ss_pred --cCCCCeEEEEEEE
Confidence 3323446666664
No 393
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=61.43 E-value=83 Score=29.28 Aligned_cols=49 Identities=31% Similarity=0.314 Sum_probs=40.5
Q ss_pred HHHchhhHHHHHHhcCCh----hhHHHHHHHHHHHHHhcCCHHHHHHHHHHhc
Q 002318 370 VYLDMKEYAAALANCRDP----LQRDQVYLVQAEAAFATKDFHRAASFYAKIN 418 (936)
Q Consensus 370 ~ll~~~~f~~Al~~~~~~----~~~~~I~~~~~~~L~~~g~y~~Aa~~y~~~~ 418 (936)
.++..|+|++|+...+.. ..-..+....|.-++..|++++|...|.+..
T Consensus 15 ~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~ 67 (176)
T 2r5s_A 15 ELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIP 67 (176)
T ss_dssp HHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCC
T ss_pred HHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhh
Confidence 488899999999997642 2234678888999999999999999998875
No 394
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=61.16 E-value=7.6 Score=34.57 Aligned_cols=49 Identities=10% Similarity=0.017 Sum_probs=39.6
Q ss_pred HHHchhhHHHHHHhcCChh----hHHHHHHHHHHHHHhcCCHHHHHHHHHHhc
Q 002318 370 VYLDMKEYAAALANCRDPL----QRDQVYLVQAEAAFATKDFHRAASFYAKIN 418 (936)
Q Consensus 370 ~ll~~~~f~~Al~~~~~~~----~~~~I~~~~~~~L~~~g~y~~Aa~~y~~~~ 418 (936)
.+++.|+|++|+...+... .-.......|.-++..|++++|...|.+..
T Consensus 26 ~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al 78 (121)
T 1hxi_A 26 SMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHAR 78 (121)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4889999999999876321 234667788999999999999999998875
No 395
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=61.10 E-value=6.9 Score=35.19 Aligned_cols=50 Identities=18% Similarity=0.331 Sum_probs=40.2
Q ss_pred HHHHchhhHHHHHHhcCChh----hHHHHHHHHHHHHHhcCCHHHHHHHHHHhc
Q 002318 369 KVYLDMKEYAAALANCRDPL----QRDQVYLVQAEAAFATKDFHRAASFYAKIN 418 (936)
Q Consensus 369 ~~ll~~~~f~~Al~~~~~~~----~~~~I~~~~~~~L~~~g~y~~Aa~~y~~~~ 418 (936)
..|++.|+|++|++.++... .-...+...|.-++..|+|++|.+.|.+..
T Consensus 55 ~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al 108 (126)
T 4gco_A 55 ACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRKAACLVAMREWSKAQRAYEDAL 108 (126)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred hHHHhhccHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 35788899999999876422 224677888999999999999999998875
No 396
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=60.38 E-value=59 Score=36.47 Aligned_cols=74 Identities=14% Similarity=0.188 Sum_probs=46.5
Q ss_pred hhHHHHHHhcC----ChhhHHHHHHHHHHHHHhcCCH-HHHHHHHHHhc--C---CCChHHHHHHhcCcChHHHHHHHHH
Q 002318 375 KEYAAALANCR----DPLQRDQVYLVQAEAAFATKDF-HRAASFYAKIN--Y---ILSFEEITLKFISVSEQDALRTFLL 444 (936)
Q Consensus 375 ~~f~~Al~~~~----~~~~~~~I~~~~~~~L~~~g~y-~~Aa~~y~~~~--~---~~~~E~v~lkFl~~~~~~~L~~YL~ 444 (936)
+.+++|++..+ .+.....+....|..++..|+| ++|.+.|.+.. + ...|-....-+...++.+.-..++.
T Consensus 82 ~~~~~al~~l~~~~~~~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~ 161 (474)
T 4abn_A 82 EEMEKTLQQMEEVLGSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFS 161 (474)
T ss_dssp HHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 34666666543 2234567888999999999999 99999998875 1 1123333444445555555455555
Q ss_pred HHhh
Q 002318 445 RKLD 448 (936)
Q Consensus 445 ~~l~ 448 (936)
.-+.
T Consensus 162 ~al~ 165 (474)
T 4abn_A 162 GALT 165 (474)
T ss_dssp HHHT
T ss_pred HHHh
Confidence 4444
No 397
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=60.32 E-value=8.8 Score=33.29 Aligned_cols=15 Identities=13% Similarity=0.372 Sum_probs=8.9
Q ss_pred hcCCHHHHHHHHHHh
Q 002318 403 ATKDFHRAASFYAKI 417 (936)
Q Consensus 403 ~~g~y~~Aa~~y~~~ 417 (936)
..|+|++|...|.+.
T Consensus 50 ~~~~~~~A~~~~~~~ 64 (131)
T 1elr_A 50 EKGDYNKCRELCEKA 64 (131)
T ss_dssp HHTCHHHHHHHHHHH
T ss_pred HhccHHHHHHHHHHH
Confidence 356666666666554
No 398
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=60.20 E-value=9.9 Score=33.74 Aligned_cols=50 Identities=12% Similarity=-0.006 Sum_probs=39.5
Q ss_pred HHHHchhhHHHHHHhcCCh----hhHHHHHHHHHHHHHhcCCHHHHHHHHHHhc
Q 002318 369 KVYLDMKEYAAALANCRDP----LQRDQVYLVQAEAAFATKDFHRAASFYAKIN 418 (936)
Q Consensus 369 ~~ll~~~~f~~Al~~~~~~----~~~~~I~~~~~~~L~~~g~y~~Aa~~y~~~~ 418 (936)
..++..|+|++|+...+.. ..-..+....|.-++..|+|++|...|.+..
T Consensus 17 ~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al 70 (137)
T 3q49_B 17 NRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRAL 70 (137)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 3577889999999886531 1224678888999999999999999998865
No 399
>1q47_A Semaphorin 3A; beta propeller, signaling protein; HET: NAG; 2.80A {Mus musculus} SCOP: b.69.12.1
Probab=58.90 E-value=16 Score=41.71 Aligned_cols=60 Identities=12% Similarity=0.077 Sum_probs=44.3
Q ss_pred ceeEEEEeC--------CEEEEEecCCeEEEEeCCCC---------CceeeEcCCCCCCccceeEEEeCCCCCeEEEEee
Q 002318 23 VITCMSAGN--------DVIVLGTSKGWLIRHDFGAG---------DSYDIDLSAGRPGEQSIHKVFVDPGGSHCIATIV 85 (936)
Q Consensus 23 ~i~~l~v~~--------n~l~l~~~~g~l~ridl~~~---------~~~~~~l~~~~~~~~~i~~i~lDp~G~hlli~~~ 85 (936)
..|++||.. .++++||.+|+|+++=+.++ .++++++-.. ..+|..+-+|+.+.+|.|.|.
T Consensus 405 ~lT~IaVd~v~~~~~~~tV~flGT~~G~l~Kvv~~~~~~~~~~~~~~~eei~v~~~---~~pI~~m~l~~~~~~Lyv~s~ 481 (495)
T 1q47_A 405 QFTQIVVDRVDAEDGQYDVMFIGTDVGTVLKVVSVPKETWHDLEEVLLEEMTVFRE---PTTISAMELSTKQQQLYIGST 481 (495)
T ss_dssp CEEEEEEEEEECSSCEEEEEEEEETTSCEEEEECC-----------CCEEECCSSS---CCCCCEEEEETTTTEEEEEBS
T ss_pred ceEEEEEEEEccCCCcEEEEEEeCCCcEEEEEEEcCCCCccccceEEEEEEeecCC---CCccceEEEcCCCCEEEEEEC
Confidence 468888874 27899999999999977222 2345555321 367899999999999999987
No 400
>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}
Probab=58.87 E-value=2.4e+02 Score=31.93 Aligned_cols=159 Identities=11% Similarity=0.101 Sum_probs=83.6
Q ss_pred eeEEEEeC---CEEEEEecC-CeEEEEeCCCCCceeeEcCCCCCCccceeEEEe-------CCCCCeEEEEeecCC----
Q 002318 24 ITCMSAGN---DVIVLGTSK-GWLIRHDFGAGDSYDIDLSAGRPGEQSIHKVFV-------DPGGSHCIATIVGSG---- 88 (936)
Q Consensus 24 i~~l~v~~---n~l~l~~~~-g~l~ridl~~~~~~~~~l~~~~~~~~~i~~i~l-------Dp~G~hlli~~~~~~---- 88 (936)
-..|++.. +.||++-.. +.|.+||+....+..+ ++...........|.+ |+.|.+|+++....+
T Consensus 141 p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~~l-~~~~~~~~~~p~~ia~~~~~~~~d~~G~~lyvad~~~~~~~~ 219 (496)
T 3kya_A 141 NGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRMLSSP-LNINTIPTNRIRSIAFNKKIEGYADEAEYMIVAIDYDGKGDE 219 (496)
T ss_dssp EEEEEEETTEEEEEEEEEETEEEEEEEETTTTEEEEE-ECCTTSSCSBEEEEEECCCBTTTBCTTCEEEEEECCCTTGGG
T ss_pred CCEEEEccCCCCEEEEEECCCCeEEEEECCCCEEEEE-EccCccccCCCcEEEEeecccccCCCCCEEEEEeCCCCCccc
Confidence 36788883 567777664 6788899954555543 2322112346899999 999999999876110
Q ss_pred CccEEEEecCCC-Cc------eeccCCCCceEEEEEecCCCCCCCCcceEEEEc-CCCcEEEEEEe-------cCCcc--
Q 002318 89 GAETFYTHAKWS-KP------RVLSKLKGLVVNAVAWNRQQITEASTKEIILGT-DTGQLHEMAVD-------EKDKR-- 151 (936)
Q Consensus 89 ~g~~~Y~~~~~~-k~------k~L~klkg~~I~sVaw~~~~~~~~st~~iLiGt-~~G~i~e~~i~-------~~~~~-- 151 (936)
+..++|+..... ++ +.+..+++ ...++.+ ...+.+.+.. .+|.|+.+.++ .+...
T Consensus 220 ~~~V~~i~r~~~G~~~~~~~~~~v~~~~~--p~giavd------p~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp 291 (496)
T 3kya_A 220 SPSVYIIKRNADGTFDDRSDIQLIAAYKQ--CNGATIH------PINGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDP 291 (496)
T ss_dssp EEEEEEEECCTTSCCSTTSCEEEEEEESC--CCCEEEC------TTTCCEEEEETTTTEEEEECHHHHHHHHHTTCCCCC
T ss_pred CceEEEEecCCCCceeecccceeeccCCC--ceEEEEc------CCCCeEEEEECCCCEEEEEecccccccccCceeecc
Confidence 013667643220 11 12221111 1122233 1245666554 45777777765 22110
Q ss_pred ---cc--eeeEEeeeCCCCCceeeEEEEeeccCCCceEEEEEEC-CCeEEEE
Q 002318 152 ---EK--YIKLLFELNELPEAFMGLQMETASLSNGTRYYVMAVT-PTRLYSF 197 (936)
Q Consensus 152 ---~~--~~k~v~~l~~~~~~I~gi~~~~~~~~~~~~~~i~ast-~~rly~f 197 (936)
.. -.++++.+++. +.-.+|.|.. ..+.+.++-+ ..+++.+
T Consensus 292 ~~~~~~g~~~~l~~~~~~-~~p~~ia~~p-----~G~~lYvaD~~~h~I~ki 337 (496)
T 3kya_A 292 IVKNNPNTFKQLFTIADP-SWEFQIFIHP-----TGKYAYFGVINNHYFMRS 337 (496)
T ss_dssp BGGGCTTTEEEEEECSSS-SCCEEEEECT-----TSSEEEEEETTTTEEEEE
T ss_pred cccccccccceeEecCCC-CCceEEEEcC-----CCCEEEEEeCCCCEEEEE
Confidence 00 03455666642 2246777762 2244455444 6677764
No 401
>3mvd_K Regulator of chromosome condensation; protein-DNA complex, nucleosome core particle (NCP), NCP-CHR factor complex; HET: DNA; 2.90A {Drosophila melanogaster}
Probab=58.47 E-value=2.1e+02 Score=31.20 Aligned_cols=155 Identities=10% Similarity=0.063 Sum_probs=90.8
Q ss_pred CceeEEEEeCCEEEEEecCCeEEEEeC-CCCC-------ceeeEcCCCCCCccceeEEEeCCCCCeEEEEeecCCCccEE
Q 002318 22 GVITCMSAGNDVIVLGTSKGWLIRHDF-GAGD-------SYDIDLSAGRPGEQSIHKVFVDPGGSHCIATIVGSGGAETF 93 (936)
Q Consensus 22 ~~i~~l~v~~n~l~l~~~~g~l~ridl-~~~~-------~~~~~l~~~~~~~~~i~~i~lDp~G~hlli~~~~~~~g~~~ 93 (936)
..|..+++..+..++.+.+|.||-|-. +... ......|.......+|.+|.. ...|.++-+. +|.+|
T Consensus 127 ~~i~~va~G~~hs~al~~~G~v~~wG~~~n~~GqlG~~~~~~~~~p~~~~~~~~i~~va~--G~~hs~alt~---~G~v~ 201 (423)
T 3mvd_K 127 GKALCISAGDSHSACLLEDGRVFAWGSFRDSHGNMGLTIDGNKRTPIDLMEGTVCCSIAS--GADHLVILTT---AGKVF 201 (423)
T ss_dssp SCEEEEEECSSEEEEEETTSCEEEEECEECSSSEEESBTTBCEEEEEESSTTCCEEEEEE--CSSEEEEEET---TSCEE
T ss_pred CCEEEEEcCcCeEEEEeCCCeEEEEeCCCCCCCCcCcCCCCCCceeeEecCCCcEEEEec--CCCeEEEEec---CCeEE
Confidence 568999999999999999999999953 1110 011122221222457888876 4678888887 89998
Q ss_pred EEecCC-----------------------CCceeccCCCCceEEEEEecCCCCCCCCcceEEEEcCCCcEEEEEEecCC-
Q 002318 94 YTHAKW-----------------------SKPRVLSKLKGLVVNAVAWNRQQITEASTKEIILGTDTGQLHEMAVDEKD- 149 (936)
Q Consensus 94 Y~~~~~-----------------------~k~k~L~klkg~~I~sVaw~~~~~~~~st~~iLiGt~~G~i~e~~i~~~~- 149 (936)
-+..+. ..+..+.-..+..|..|+=.. ...+++-|.+|.||-.-.+...
T Consensus 202 ~wG~n~~GqLG~~~~~~~~~~~~~~~~~~~~p~~v~~~~~~~v~~i~~g~-------~~~~~~~~~~g~v~~wG~n~~gq 274 (423)
T 3mvd_K 202 TVGCAEQGQLGRLSERSISGEGRRGKRDLLRPTQLIITRAKPFEAIWATN-------YCTFMRESQTQVIWATGLNNFKQ 274 (423)
T ss_dssp EEECCTTSTTSSCCTTTTTSCSTTTTTTTSSCEEECCTTCCCEEEEEEET-------TEEEEEETTTCCEEEEEECTTCT
T ss_pred EeeCCcCCccCCCcccccccccccccccccCCeEEeecCCccEEEEEECC-------cEEEEEECCCCeEEEEeCCCCCc
Confidence 876321 133444333456777776552 1256665889999876654320
Q ss_pred ------cccceeeEEeeeCCCCCceeeEEEEeeccCCCceEEEEEECCCeEEEEe
Q 002318 150 ------KREKYIKLLFELNELPEAFMGLQMETASLSNGTRYYVMAVTPTRLYSFT 198 (936)
Q Consensus 150 ------~~~~~~k~v~~l~~~~~~I~gi~~~~~~~~~~~~~~i~ast~~rly~f~ 198 (936)
..+.....+ .++. ..|..|.- + ....++++...++|.|-
T Consensus 275 lg~~~~~~~~~~~p~-~~~~--~~v~~ia~------G-~~ht~alt~~G~v~~wG 319 (423)
T 3mvd_K 275 LAHETKGKEFALTPI-KTEL--KDIRHIAG------G-QHHTVILTTDLKCSVVG 319 (423)
T ss_dssp TSSCCTTCSEEEEEE-EECC--CSEEEEEE------C-SSEEEEEETTCCEEEEE
T ss_pred CCCCCCCCceeeeeE-EcCC--CCeEEEEc------c-cCeEEEEeCCCcEEEEE
Confidence 111112222 2221 23554433 2 24555667889999984
No 402
>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A
Probab=58.43 E-value=1 Score=37.73 Aligned_cols=31 Identities=26% Similarity=0.513 Sum_probs=23.3
Q ss_pred cccccccchhhhhcccccccccccCCCCCCCCEEEEcCCCh-hHHHhHHHH
Q 002318 833 DEDCGVCRRKILVAGRDYRMARGYASVGPMAPFYVFPCGHA-FHAQCLIAH 882 (936)
Q Consensus 833 ~~~C~~C~k~L~~~~~~~~~~~~~~~~~~~~~fvvFpCgH~-fH~~CL~~~ 882 (936)
...|.+|..... ..+..||||. |-..|+...
T Consensus 18 ~~~C~IC~~~~~-------------------~~v~~pCgH~~~C~~C~~~~ 49 (79)
T 2yho_A 18 AMLCMVCCEEEI-------------------NSTFCPCGHTVCCESCAAQL 49 (79)
T ss_dssp HTBCTTTSSSBC-------------------CEEEETTCBCCBCHHHHTTC
T ss_pred CCEeEEeCcccC-------------------cEEEECCCCHHHHHHHHHhc
Confidence 457999975432 4567799999 999998753
No 403
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=58.18 E-value=1.3e+02 Score=34.77 Aligned_cols=149 Identities=15% Similarity=0.139 Sum_probs=79.6
Q ss_pred CCceeEEEEeCCEEEEEec----CCeEEEEe-CCCCCceeeEcCCCCCCcccee---------EE-Ee-CCCCCe-EEEE
Q 002318 21 RGVITCMSAGNDVIVLGTS----KGWLIRHD-FGAGDSYDIDLSAGRPGEQSIH---------KV-FV-DPGGSH-CIAT 83 (936)
Q Consensus 21 ~~~i~~l~v~~n~l~l~~~----~g~l~rid-l~~~~~~~~~l~~~~~~~~~i~---------~i-~l-Dp~G~h-lli~ 83 (936)
...+.+++++++.+++... .|..-.+. .......++..+ ...+. .. |. .|.|.. ++.+
T Consensus 23 ~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~-----~~~~~~~~~~~~~~~~~~~~SPDg~~~la~~ 97 (662)
T 3azo_A 23 SGRPACVGAVGDEVWWVAPRPAEAGRATLVRRRADGAEESALPA-----PWNVRNRVFEYSGFPWAGVPRPAGGPLLVFT 97 (662)
T ss_dssp CSCCEEEEEETTEEEEEEEETTTTTEEEEEEECTTSCEEESSCT-----TCCBCCCGGGTCCCCEEEECCSSSSCEEEEE
T ss_pred CCccceeEEcCCeEEEEecCcccCCcEEEEEECCCCCcceeCCC-----CccccccccccCCccceeeeecCCCeEEEEE
Confidence 3568999999998887776 44443333 222223222211 11222 23 66 499999 6655
Q ss_pred eecCCCccEEEEecC--C-CCceeccCC----CCceEEEEEecCCCCCCCCcceEEEEcCC----------CcEEEEEEe
Q 002318 84 IVGSGGAETFYTHAK--W-SKPRVLSKL----KGLVVNAVAWNRQQITEASTKEIILGTDT----------GQLHEMAVD 146 (936)
Q Consensus 84 ~~~~~~g~~~Y~~~~--~-~k~k~L~kl----kg~~I~sVaw~~~~~~~~st~~iLiGt~~----------G~i~e~~i~ 146 (936)
.. .++..|-+... . .+.+.|... .+..+.+++|+++ .+.|+.++.+ ..|+...++
T Consensus 98 ~~--~~~~l~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~spD------g~~l~~~~~~~~~~~~~~~~~~i~~~~~~ 169 (662)
T 3azo_A 98 HF--GDQRLYAFEPDAPGGAVPRPLTPVSAVGGGLRWADPVLLPE------RGEVWCMAEEFTGEGPSDVRRFLAAVPLD 169 (662)
T ss_dssp BT--TTCCEEEECTTSTTCCCCEECSCCCCSTTCEEEEEEEEETT------TTEEEEEEEEECSSSTTCEEEEEEEEETT
T ss_pred EC--CCCeEEEEcCCCCCCCCCEeccCCccCCCCccccCcEECCC------CCEEEEEEecccCCCCCCceeEEEEEECC
Confidence 43 14566556554 2 566777654 2467899999953 2356666554 456666554
Q ss_pred cCCccc-ceeeEEeeeCCCCCceeeEEEEeeccCCCceEEEEEE
Q 002318 147 EKDKRE-KYIKLLFELNELPEAFMGLQMETASLSNGTRYYVMAV 189 (936)
Q Consensus 147 ~~~~~~-~~~k~v~~l~~~~~~I~gi~~~~~~~~~~~~~~i~as 189 (936)
.....+ ...+.+.. ..+..+.++.|. .+.+.+++++
T Consensus 170 ~~~~~~~~~~~~l~~--~~~~~~~~~~~S-----pDG~~la~~~ 206 (662)
T 3azo_A 170 GSAAADRSAVRELSD--DAHRFVTGPRLS-----PDGRQAVWLA 206 (662)
T ss_dssp STTTTCGGGSEESSC--SCSSEECCCEEC-----TTSSEEEEEE
T ss_pred CCccccCCceeEEEe--cCCCcccCceEC-----CCCCEEEEEE
Confidence 410000 11233320 112446666665 2335677766
No 404
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=58.13 E-value=7.9 Score=34.14 Aligned_cols=50 Identities=18% Similarity=0.357 Sum_probs=39.8
Q ss_pred HHHHchhhHHHHHHhcCChh----hHHHHHHHHHHHHHhcCCHHHHHHHHHHhc
Q 002318 369 KVYLDMKEYAAALANCRDPL----QRDQVYLVQAEAAFATKDFHRAASFYAKIN 418 (936)
Q Consensus 369 ~~ll~~~~f~~Al~~~~~~~----~~~~I~~~~~~~L~~~g~y~~Aa~~y~~~~ 418 (936)
..++..|+|++|+..++... .-.......|.-++..|+|++|...|.+..
T Consensus 46 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al 99 (126)
T 3upv_A 46 AALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAAR 99 (126)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhCHHHHHHHHHHHH
Confidence 34778899999999876321 224677888999999999999999998875
No 405
>1zfo_A LAsp-1; LIM domain, zinc-finger, metal-binding protein; NMR {Sus scrofa} SCOP: g.39.1.4
Probab=58.06 E-value=0.8 Score=30.85 Aligned_cols=29 Identities=17% Similarity=0.522 Sum_probs=20.7
Q ss_pred cccccccchhhhhcccccccccccCCCCCCCCEEEEcCCChhHHHhH
Q 002318 833 DEDCGVCRRKILVAGRDYRMARGYASVGPMAPFYVFPCGHAFHAQCL 879 (936)
Q Consensus 833 ~~~C~~C~k~L~~~~~~~~~~~~~~~~~~~~~fvvFpCgH~fH~~CL 879 (936)
+.+|..|++.+.... + +-.-|..||..|+
T Consensus 3 ~~~C~~C~k~Vy~~E---k---------------~~~~g~~~Hk~CF 31 (31)
T 1zfo_A 3 NPNCARCGKIVYPTE---K---------------VNCLDKFWHKACF 31 (31)
T ss_dssp CCBCSSSCSBCCGGG---C---------------CCSSSSCCCGGGC
T ss_pred CCcCCccCCEEecce---e---------------EEECCeEecccCC
Confidence 568999999987621 2 2245788998884
No 406
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*
Probab=58.00 E-value=2.8e+02 Score=32.50 Aligned_cols=109 Identities=10% Similarity=0.044 Sum_probs=61.1
Q ss_pred eCCEEEEEecCC-------------eEEEEeC-CCCCceeeEcCCCCC-CccceeEEEeCCCCCeEEEEeecCCC-ccEE
Q 002318 30 GNDVIVLGTSKG-------------WLIRHDF-GAGDSYDIDLSAGRP-GEQSIHKVFVDPGGSHCIATIVGSGG-AETF 93 (936)
Q Consensus 30 ~~n~l~l~~~~g-------------~l~ridl-~~~~~~~~~l~~~~~-~~~~i~~i~lDp~G~hlli~~~~~~~-g~~~ 93 (936)
.++.++.+...+ .|+++++ .+.. +...+-.... .......+..+|.|++++++..++++ .+.|
T Consensus 184 Dg~~l~y~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~-~~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~ 262 (693)
T 3iuj_A 184 GNEGFFYSSYDKPDGSELSARTDQHKVYFHRLGTAQE-DDRLVFGAIPAQHHRYVGATVTEDDRFLLISAANSTSGNRLY 262 (693)
T ss_dssp TTTEEEEEESSCCC-------CCCCEEEEEETTSCGG-GCEEEESCSGGGCCSEEEEEECTTSCEEEEEEESSSSCCEEE
T ss_pred CCCEEEEEEecCcccccccccCCCcEEEEEECCCCcc-cceEEEecCCCCCeEEEEEEEcCCCCEEEEEEccCCCCcEEE
Confidence 466777777653 4999999 3332 2222211111 11345678889999999888763222 3777
Q ss_pred EEecCCC--CceeccCCCCceEEEEEecCCCCCCCCcceEEEEcCC----CcEEEEEEec
Q 002318 94 YTHAKWS--KPRVLSKLKGLVVNAVAWNRQQITEASTKEIILGTDT----GQLHEMAVDE 147 (936)
Q Consensus 94 Y~~~~~~--k~k~L~klkg~~I~sVaw~~~~~~~~st~~iLiGt~~----G~i~e~~i~~ 147 (936)
++..... +++.|..-.+.. .++ |.++ .+.|++-|++ +.|+.+.+..
T Consensus 263 ~~d~~~~~~~~~~l~~~~~~~-~~~-~~~~------g~~l~~~t~~~~~~~~l~~~d~~~ 314 (693)
T 3iuj_A 263 VKDLSQENAPLLTVQGDLDAD-VSL-VDNK------GSTLYLLTNRDAPNRRLVTVDAAN 314 (693)
T ss_dssp EEETTSTTCCCEEEECSSSSC-EEE-EEEE------TTEEEEEECTTCTTCEEEEEETTS
T ss_pred EEECCCCCCceEEEeCCCCce-EEE-Eecc------CCEEEEEECCCCCCCEEEEEeCCC
Confidence 7776554 456665433333 232 3311 2366666543 6788877754
No 407
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=57.95 E-value=1.1e+02 Score=33.56 Aligned_cols=157 Identities=11% Similarity=0.041 Sum_probs=89.5
Q ss_pred EEEEeC--CEEEEEe----------cCCeEEEEeC-CCCCceeeEcCCC-C-CCccceeEEEeCCCCCeEEEEeecCCCc
Q 002318 26 CMSAGN--DVIVLGT----------SKGWLIRHDF-GAGDSYDIDLSAG-R-PGEQSIHKVFVDPGGSHCIATIVGSGGA 90 (936)
Q Consensus 26 ~l~v~~--n~l~l~~----------~~g~l~ridl-~~~~~~~~~l~~~-~-~~~~~i~~i~lDp~G~hlli~~~~~~~g 90 (936)
+++++. +.+|++- .++.|..||. ....+.++++|.. + ........+-++|.|++++|+.. ..++
T Consensus 82 ~va~spDG~~lyVan~~~~r~~~G~~~~~VsviD~~t~~v~~~I~v~~g~r~~~g~~P~~~a~spDGk~lyVan~-~~~~ 160 (386)
T 3sjl_D 82 NPVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQF-SPAP 160 (386)
T ss_dssp EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEEC-SSSC
T ss_pred cEEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCeEEEEEECCCccccccCCCCceEEEcCCCCEEEEEEc-CCCC
Confidence 477775 4777775 3578999999 6666778888741 1 01134578999999999999853 0135
Q ss_pred cEEEEecCCCCceeccCCCCceEEEEEecCCCCCCCCcceEEEEcCCCcEEEEEEecCCcccceeeEEeeeCCCCCcee-
Q 002318 91 ETFYTHAKWSKPRVLSKLKGLVVNAVAWNRQQITEASTKEIILGTDTGQLHEMAVDEKDKREKYIKLLFELNELPEAFM- 169 (936)
Q Consensus 91 ~~~Y~~~~~~k~k~L~klkg~~I~sVaw~~~~~~~~st~~iLiGt~~G~i~e~~i~~~~~~~~~~k~v~~l~~~~~~I~- 169 (936)
.+.-+.....++..--.+.|+ ..+.+. ..+.++..+.+|.+....+....+.......++. ++ ..|+.
T Consensus 161 ~VsVID~~t~~vv~tI~v~g~----~~~~P~-----g~~~~~~~~~DG~~~~v~~~~~g~v~~~~~~~~~-~~-~~~~~~ 229 (386)
T 3sjl_D 161 AVGVVDLEGKAFKRMLDVPDC----YHIFPT-----APDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFH-PE-DEFLIN 229 (386)
T ss_dssp EEEEEETTTTEEEEEEECCSE----EEEEEE-----ETTEEEEEETTSCEEEEECCSSSCCEEEECCCCS-CT-TSCBCS
T ss_pred eEEEEECCCCcEEEEEECCCc----ceeecC-----CCceeEEECCCCCEEEEECCCCCeEEEeecceec-cc-cccccc
Confidence 666777766553221123343 222211 2357888889999988887653221100011111 11 12232
Q ss_pred eEEEEeeccCCCceEEEEEECCCeEEEEec
Q 002318 170 GLQMETASLSNGTRYYVMAVTPTRLYSFTG 199 (936)
Q Consensus 170 gi~~~~~~~~~~~~~~i~ast~~rly~f~~ 199 (936)
...|.. ..+.++|+|...++|.+..
T Consensus 230 ~~~~~~-----~dG~~~~vs~~g~V~v~d~ 254 (386)
T 3sjl_D 230 HPAYSQ-----KAGRLVWPTYTGKIHQIDL 254 (386)
T ss_dssp CCEEET-----TTTEEEEEBTTSEEEEEEC
T ss_pred cceeEc-----CCCcEEEEeCCCEEEEEEC
Confidence 123331 1134556777888997764
No 408
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=57.79 E-value=7.3 Score=33.83 Aligned_cols=25 Identities=8% Similarity=0.089 Sum_probs=13.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHh
Q 002318 393 VYLVQAEAAFATKDFHRAASFYAKI 417 (936)
Q Consensus 393 I~~~~~~~L~~~g~y~~Aa~~y~~~ 417 (936)
+....|..++..|+|++|...|.+.
T Consensus 21 ~~~~lg~~~~~~g~~~~A~~~~~~a 45 (115)
T 2kat_A 21 LRFTLGKTYAEHEQFDAALPHLRAA 45 (115)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHH
Confidence 4444555555555555555555554
No 409
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=57.57 E-value=15 Score=31.62 Aligned_cols=24 Identities=29% Similarity=0.365 Sum_probs=11.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHh
Q 002318 394 YLVQAEAAFATKDFHRAASFYAKI 417 (936)
Q Consensus 394 ~~~~~~~L~~~g~y~~Aa~~y~~~ 417 (936)
....|..++..|+|++|...|.+.
T Consensus 7 ~~~l~~~~~~~~~~~~A~~~~~~a 30 (131)
T 1elr_A 7 EKELGNDAYKKKDFDTALKHYDKA 30 (131)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHH
Confidence 334444444455555555544443
No 410
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=57.53 E-value=1.9e+02 Score=30.34 Aligned_cols=50 Identities=20% Similarity=0.020 Sum_probs=33.3
Q ss_pred HHHHchhhHHHHHHhcCCh----------hhHHHHHHHHHHHHHhcCCHHHHHHHHHHhc
Q 002318 369 KVYLDMKEYAAALANCRDP----------LQRDQVYLVQAEAAFATKDFHRAASFYAKIN 418 (936)
Q Consensus 369 ~~ll~~~~f~~Al~~~~~~----------~~~~~I~~~~~~~L~~~g~y~~Aa~~y~~~~ 418 (936)
..+...|+|++|....+.. ..........|..++..|+|++|...|.+..
T Consensus 61 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al 120 (373)
T 1hz4_A 61 EVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAF 120 (373)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 3466778888887775421 1223445567778888888888888877654
No 411
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=57.17 E-value=27 Score=29.86 Aligned_cols=78 Identities=13% Similarity=0.264 Sum_probs=48.6
Q ss_pred HHHchhhHHHHHHhcCCh----hhHHHHHHHHHHHHHhcCCHHHHHHHHHHhc--CCC---ChHHHHHHhcCcChHHHHH
Q 002318 370 VYLDMKEYAAALANCRDP----LQRDQVYLVQAEAAFATKDFHRAASFYAKIN--YIL---SFEEITLKFISVSEQDALR 440 (936)
Q Consensus 370 ~ll~~~~f~~Al~~~~~~----~~~~~I~~~~~~~L~~~g~y~~Aa~~y~~~~--~~~---~~E~v~lkFl~~~~~~~L~ 440 (936)
.+...|+|++|+.+.+.. ..-..+....|..++..|++++|...|.+.. ... .+-.....+...++.+.-.
T Consensus 10 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 89 (136)
T 2fo7_A 10 AYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAI 89 (136)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHH
T ss_pred HHHHcCcHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHhcCHHHHH
Confidence 477889999999886531 1223566677888999999999999998764 111 1222333344555554444
Q ss_pred HHHHHHh
Q 002318 441 TFLLRKL 447 (936)
Q Consensus 441 ~YL~~~l 447 (936)
.++..-+
T Consensus 90 ~~~~~~~ 96 (136)
T 2fo7_A 90 EYYQKAL 96 (136)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 4444433
No 412
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=56.84 E-value=42 Score=29.76 Aligned_cols=29 Identities=7% Similarity=0.101 Sum_probs=14.8
Q ss_pred hhHHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 002318 388 LQRDQVYLVQAEAAFATKDFHRAASFYAK 416 (936)
Q Consensus 388 ~~~~~I~~~~~~~L~~~g~y~~Aa~~y~~ 416 (936)
..+..+....|..++..|+|++|...|.+
T Consensus 6 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 34 (164)
T 3ro3_A 6 AAQGRAFGNLGNTHYLLGNFRDAVIAHEQ 34 (164)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 33444455555555555555555555444
No 413
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=56.84 E-value=17 Score=33.15 Aligned_cols=49 Identities=16% Similarity=0.116 Sum_probs=38.5
Q ss_pred HHHchhhHHHHHHhcCCh----hhHHHHHHHHHHHHHhcCCHHHHHHHHHHhc
Q 002318 370 VYLDMKEYAAALANCRDP----LQRDQVYLVQAEAAFATKDFHRAASFYAKIN 418 (936)
Q Consensus 370 ~ll~~~~f~~Al~~~~~~----~~~~~I~~~~~~~L~~~g~y~~Aa~~y~~~~ 418 (936)
.++..|+|++|+...+.. ..-..+....|..++..|+|++|...|.+..
T Consensus 22 ~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~ 74 (166)
T 1a17_A 22 DYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAI 74 (166)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 467889999999886531 1224677788999999999999999998865
No 414
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1
Probab=56.73 E-value=2e+02 Score=30.35 Aligned_cols=100 Identities=11% Similarity=0.102 Sum_probs=55.7
Q ss_pred cCCeEEEEeCCC-CCc-eeeEcCCCCCCccceeEEEeCCCCCeEEEEeecCCCccEEEEecC-CCCceeccCC----CCc
Q 002318 39 SKGWLIRHDFGA-GDS-YDIDLSAGRPGEQSIHKVFVDPGGSHCIATIVGSGGAETFYTHAK-WSKPRVLSKL----KGL 111 (936)
Q Consensus 39 ~~g~l~ridl~~-~~~-~~~~l~~~~~~~~~i~~i~lDp~G~hlli~~~~~~~g~~~Y~~~~-~~k~k~L~kl----kg~ 111 (936)
.+|.+..+++.+ ... ..+.... ......++.+-++|.|++++++.. +++..+-+... ..+.+.+..+ .|.
T Consensus 117 ~~g~v~v~~~~~~g~~~~~~~~~~-~~~~~~~~~~~~spdG~~l~~~~~--~~~~v~~~~~~~~g~~~~~~~~~~~~~g~ 193 (365)
T 1jof_A 117 FAGYGNVFSVSETGKLEKNVQNYE-YQENTGIHGMVFDPTETYLYSADL--TANKLWTHRKLASGEVELVGSVDAPDPGD 193 (365)
T ss_dssp SCCEEEEEEECTTCCEEEEEEEEE-CCTTCCEEEEEECTTSSEEEEEET--TTTEEEEEEECTTSCEEEEEEEECSSTTC
T ss_pred CCceEEEEccCCCCcCcceEeeEE-eCCCCcceEEEECCCCCEEEEEcC--CCCEEEEEEECCCCCEEEeeeEecCCCCC
Confidence 577888888732 222 2232210 011356899999999999877653 13445444443 3333333222 256
Q ss_pred eEEEEEecCCCCCCCCcceEEEEcC-CCcEEEEEEec
Q 002318 112 VVNAVAWNRQQITEASTKEIILGTD-TGQLHEMAVDE 147 (936)
Q Consensus 112 ~I~sVaw~~~~~~~~st~~iLiGt~-~G~i~e~~i~~ 147 (936)
.+.+++|+++ .+.+.++.. ++.|....++.
T Consensus 194 ~p~~~~~spd------g~~l~v~~~~~~~v~v~~~~~ 224 (365)
T 1jof_A 194 HPRWVAMHPT------GNYLYALMEAGNRICEYVIDP 224 (365)
T ss_dssp CEEEEEECTT------SSEEEEEETTTTEEEEEEECT
T ss_pred CCCEeEECCC------CCEEEEEECCCCeEEEEEEeC
Confidence 7999999843 124445543 57776666653
No 415
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=56.18 E-value=13 Score=32.40 Aligned_cols=49 Identities=16% Similarity=0.224 Sum_probs=39.6
Q ss_pred HHHchhhHHHHHHhcCC-----hh--hHHHHHHHHHHHHHhcCCHHHHHHHHHHhc
Q 002318 370 VYLDMKEYAAALANCRD-----PL--QRDQVYLVQAEAAFATKDFHRAASFYAKIN 418 (936)
Q Consensus 370 ~ll~~~~f~~Al~~~~~-----~~--~~~~I~~~~~~~L~~~g~y~~Aa~~y~~~~ 418 (936)
.++..|+|++|+...+. |. ....+....|.-++..|++++|...|.+..
T Consensus 48 ~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 103 (129)
T 2xev_A 48 SYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLSQYGEGKNTEAQQTLQQVA 103 (129)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 47788999999988652 32 236778889999999999999999987764
No 416
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=56.08 E-value=26 Score=42.10 Aligned_cols=44 Identities=7% Similarity=0.018 Sum_probs=24.1
Q ss_pred hHHHHHHHHHHHhhcCCCCHhHHHHHHHHhhcCCChHHHHHHHHH
Q 002318 614 THEVIKYLEFCVHRLHNEDPGVHNLLLSLYAKQEDDSALLRFLQC 658 (936)
Q Consensus 614 ~~~~~~YLe~li~~~~~~~~~~hn~ll~Ly~~~~~~~~Ll~fL~~ 658 (936)
.+.++.+++..+...+. ....|+.+-.+|.+.++-++-+..+++
T Consensus 93 ~~~A~~~~~kAl~l~P~-~~~a~~~Lg~~~~~~g~~~eAi~~~~~ 136 (723)
T 4gyw_A 93 VQGALQCYTRAIQINPA-FADAHSNLASIHKDSGNIPEAIASYRT 136 (723)
T ss_dssp HHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 34566666666655443 345555556666665444444555444
No 417
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=55.45 E-value=9.1 Score=35.64 Aligned_cols=49 Identities=16% Similarity=0.226 Sum_probs=36.5
Q ss_pred HHHchhhHHHHHHhcCChh----hHHHHHHHHHHHHHhcCCHHHHHHHHHHhc
Q 002318 370 VYLDMKEYAAALANCRDPL----QRDQVYLVQAEAAFATKDFHRAASFYAKIN 418 (936)
Q Consensus 370 ~ll~~~~f~~Al~~~~~~~----~~~~I~~~~~~~L~~~g~y~~Aa~~y~~~~ 418 (936)
.|+..|+|++|+..++... .-...+...|.-++..|+|++|...|.+..
T Consensus 72 ~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al 124 (162)
T 3rkv_A 72 CYLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLL 124 (162)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHhcCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHH
Confidence 3667788888888876321 224567778888889999999988887765
No 418
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=55.45 E-value=8.8 Score=33.56 Aligned_cols=50 Identities=28% Similarity=0.371 Sum_probs=39.5
Q ss_pred HHHHchhhHHHHHHhcCCh----hhHHHHHHHHHHHHHhcCCHHHHHHHHHHhc
Q 002318 369 KVYLDMKEYAAALANCRDP----LQRDQVYLVQAEAAFATKDFHRAASFYAKIN 418 (936)
Q Consensus 369 ~~ll~~~~f~~Al~~~~~~----~~~~~I~~~~~~~L~~~g~y~~Aa~~y~~~~ 418 (936)
..+...|+|++|+++++.. .....+....|.-++..|+|++|.+.|.+..
T Consensus 58 ~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~ 111 (133)
T 2lni_A 58 ACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAALEAMKDYTKAMDVYQKAL 111 (133)
T ss_dssp HHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 3577889999999987632 1234677888999999999999999988765
No 419
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=55.39 E-value=9.1 Score=35.93 Aligned_cols=50 Identities=8% Similarity=0.065 Sum_probs=40.1
Q ss_pred HHHHchhhHHHHHHhcCChh----hHHHHHHHHHHHHHhcCCHHHHHHHHHHhc
Q 002318 369 KVYLDMKEYAAALANCRDPL----QRDQVYLVQAEAAFATKDFHRAASFYAKIN 418 (936)
Q Consensus 369 ~~ll~~~~f~~Al~~~~~~~----~~~~I~~~~~~~L~~~g~y~~Aa~~y~~~~ 418 (936)
..|...|+|++|++..+... .-..++...|.-++..|+|++|...|.+..
T Consensus 78 ~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~~lg~~~~~lg~~~eA~~~~~~al 131 (151)
T 3gyz_A 78 AIYQIKEQFQQAADLYAVAFALGKNDYTPVFHTGQCQLRLKAPLKAKECFELVI 131 (151)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHSSSCCHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHccHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 45778899999999876322 223677888999999999999999998875
No 420
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=55.01 E-value=19 Score=30.95 Aligned_cols=49 Identities=16% Similarity=0.359 Sum_probs=37.6
Q ss_pred HHHchhhHHHHHHhcCCh----hhHHHHHHHHHHHHHhcCCHHHHHHHHHHhc
Q 002318 370 VYLDMKEYAAALANCRDP----LQRDQVYLVQAEAAFATKDFHRAASFYAKIN 418 (936)
Q Consensus 370 ~ll~~~~f~~Al~~~~~~----~~~~~I~~~~~~~L~~~g~y~~Aa~~y~~~~ 418 (936)
.+...|++++|+.+.+.. ..-..+....|.-++..|+|++|.+.+.+..
T Consensus 44 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 96 (136)
T 2fo7_A 44 AYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKAL 96 (136)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred HHHHhcCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 467789999999886531 1223566778999999999999999998764
No 421
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=54.56 E-value=19 Score=35.29 Aligned_cols=48 Identities=17% Similarity=0.251 Sum_probs=37.1
Q ss_pred HHHchhhHHHHHHhcCC-----hhhHHHHHHH----------------HHHHHHhcCCHHHHHHHHHHhc
Q 002318 370 VYLDMKEYAAALANCRD-----PLQRDQVYLV----------------QAEAAFATKDFHRAASFYAKIN 418 (936)
Q Consensus 370 ~ll~~~~f~~Al~~~~~-----~~~~~~I~~~----------------~~~~L~~~g~y~~Aa~~y~~~~ 418 (936)
.+++.|+|++|+...+. |.. ..+... .|.-++..|+|++|...|.+..
T Consensus 13 ~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al 81 (208)
T 3urz_A 13 AAIEAGQNGQAVSYFRQTIALNIDR-TEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELL 81 (208)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCHHH-HHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHhCCCC-hHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 37889999999998753 322 233334 8999999999999999998875
No 422
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=54.51 E-value=10 Score=32.09 Aligned_cols=49 Identities=18% Similarity=0.149 Sum_probs=39.3
Q ss_pred HHHchhhHHHHHHhcCCh----hhHHHHHHHHHHHHHhcCCHHHHHHHHHHhc
Q 002318 370 VYLDMKEYAAALANCRDP----LQRDQVYLVQAEAAFATKDFHRAASFYAKIN 418 (936)
Q Consensus 370 ~ll~~~~f~~Al~~~~~~----~~~~~I~~~~~~~L~~~g~y~~Aa~~y~~~~ 418 (936)
.++..|+|++|+...+.. ..-..+....|.-++..|+|++|...|.+..
T Consensus 47 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~ 99 (118)
T 1elw_A 47 AYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFLNRFEEAKRTYEEGL 99 (118)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 467889999999987632 1234677888999999999999999998875
No 423
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=54.19 E-value=17 Score=34.99 Aligned_cols=49 Identities=16% Similarity=0.180 Sum_probs=38.1
Q ss_pred HHHchhhHHHHHHhcCC-----hhh---------------HHHHHHHHHHHHHhcCCHHHHHHHHHHhc
Q 002318 370 VYLDMKEYAAALANCRD-----PLQ---------------RDQVYLVQAEAAFATKDFHRAASFYAKIN 418 (936)
Q Consensus 370 ~ll~~~~f~~Al~~~~~-----~~~---------------~~~I~~~~~~~L~~~g~y~~Aa~~y~~~~ 418 (936)
.++..|+|++|+++.+. |.. ...+....|.-++..|+|++|...|.+..
T Consensus 47 ~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al 115 (198)
T 2fbn_A 47 EFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVL 115 (198)
T ss_dssp HHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 46778999999887542 111 12678889999999999999999998875
No 424
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=53.99 E-value=10 Score=35.38 Aligned_cols=50 Identities=16% Similarity=0.131 Sum_probs=40.2
Q ss_pred HHHHchhhHHHHHHhcCChh----hHHHHHHHHHHHHHhcCCHHHHHHHHHHhc
Q 002318 369 KVYLDMKEYAAALANCRDPL----QRDQVYLVQAEAAFATKDFHRAASFYAKIN 418 (936)
Q Consensus 369 ~~ll~~~~f~~Al~~~~~~~----~~~~I~~~~~~~L~~~g~y~~Aa~~y~~~~ 418 (936)
..|+..|+|++|+..++... .-..++...|.-++..|+|++|...|.+..
T Consensus 53 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al 106 (164)
T 3sz7_A 53 AAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGLARFDMADYKGAKEAYEKGI 106 (164)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 35788899999999876321 224677888999999999999999998875
No 425
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=53.86 E-value=1.8e+02 Score=29.45 Aligned_cols=26 Identities=8% Similarity=-0.130 Sum_probs=21.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhc
Q 002318 393 VYLVQAEAAFATKDFHRAASFYAKIN 418 (936)
Q Consensus 393 I~~~~~~~L~~~g~y~~Aa~~y~~~~ 418 (936)
.....+..++..|+|++|.+.|.+..
T Consensus 77 ~l~~~~~~~~~~~~y~~A~~~~~~~l 102 (293)
T 2qfc_A 77 QFKDQVIMLCKQKRYKEIYNKVWNEL 102 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHh
Confidence 34567889999999999999997654
No 426
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=53.55 E-value=24 Score=32.55 Aligned_cols=50 Identities=10% Similarity=0.070 Sum_probs=39.6
Q ss_pred HHHHchhhHHHHHHhcCCh----hhHHHHHHHHHHHHHhcCCHHHHHHHHHHhc
Q 002318 369 KVYLDMKEYAAALANCRDP----LQRDQVYLVQAEAAFATKDFHRAASFYAKIN 418 (936)
Q Consensus 369 ~~ll~~~~f~~Al~~~~~~----~~~~~I~~~~~~~L~~~g~y~~Aa~~y~~~~ 418 (936)
..+...|+|++|+++.+.. .....+....|..++..|++++|.+.|.+..
T Consensus 50 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~ 103 (186)
T 3as5_A 50 IAYVKTGAVDRGTELLERSLADAPDNVKVATVLGLTYVQVQKYDLAVPLLIKVA 103 (186)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 3577889999999987632 1234677788999999999999999998864
No 427
>3mvd_K Regulator of chromosome condensation; protein-DNA complex, nucleosome core particle (NCP), NCP-CHR factor complex; HET: DNA; 2.90A {Drosophila melanogaster}
Probab=53.43 E-value=1.5e+02 Score=32.42 Aligned_cols=152 Identities=11% Similarity=0.086 Sum_probs=83.3
Q ss_pred ceeEEEEeCCEEEEEecCCeEEEE------eC-CCCCceeeEcCCCCCCccceeEEEeCCCCCeEEEEeecCCCccEEEE
Q 002318 23 VITCMSAGNDVIVLGTSKGWLIRH------DF-GAGDSYDIDLSAGRPGEQSIHKVFVDPGGSHCIATIVGSGGAETFYT 95 (936)
Q Consensus 23 ~i~~l~v~~n~l~l~~~~g~l~ri------dl-~~~~~~~~~l~~~~~~~~~i~~i~lDp~G~hlli~~~~~~~g~~~Y~ 95 (936)
.+..+++..+..++.+.+|.||-| .| .++.+.....|........|.+|.. .+.|.++-+. +|.+|-+
T Consensus 25 ~~~~ia~g~~~~~~l~~~G~v~~wG~n~~GqLG~g~~~~~~~~p~~v~~l~~v~~va~--G~~h~~~l~~---~G~v~~w 99 (423)
T 3mvd_K 25 KRARIAFHLELPKRRTVLGNVLVCGNGDVGQLGLGEDILERKRLSPVAGIPDAVDISA--GGMHNLVLTK---SGDIYSF 99 (423)
T ss_dssp ----CCCCCCCCCCCCCCEEEEEEEECTTSTTCSCSSCCEEEEEEECCSCSSEEEEEE--CSSEEEEEET---TSCEEEE
T ss_pred eeeEEecCCccceeecCCCcEEEEeCCCCCCCCCCCCCccCcCCeEccCCCCceEEee--CCCeEEEEeC---CCeEEEe
Confidence 456788889999999999999999 23 2232222222222111234655555 5789888888 8999888
Q ss_pred ecCC--------------CCceeccCCCCceEEEEEecCCCCCCCCcceEEEEcCCCcEEEEEE--ecCC-----cccce
Q 002318 96 HAKW--------------SKPRVLSKLKGLVVNAVAWNRQQITEASTKEIILGTDTGQLHEMAV--DEKD-----KREKY 154 (936)
Q Consensus 96 ~~~~--------------~k~k~L~klkg~~I~sVaw~~~~~~~~st~~iLiGt~~G~i~e~~i--~~~~-----~~~~~ 154 (936)
..+. ..+..+. +. ..|..|+=... ..++=|++|.||-.-- +... .....
T Consensus 100 G~n~~GqLG~~~~~~~~~~~P~~v~-~~-~~i~~va~G~~--------hs~al~~~G~v~~wG~~~n~~GqlG~~~~~~~ 169 (423)
T 3mvd_K 100 GCNDEGALGRDTSEDGSESKPDLID-LP-GKALCISAGDS--------HSACLLEDGRVFAWGSFRDSHGNMGLTIDGNK 169 (423)
T ss_dssp ECCSSSTTCSCCCSTTSSSSCEECC-CS-SCEEEEEECSS--------EEEEEETTSCEEEEECEECSSSEEESBTTBCE
T ss_pred ECCCCcCCCCCCcCCccccCCeEEc-CC-CCEEEEEcCcC--------eEEEEeCCCeEEEEeCCCCCCCCcCcCCCCCC
Confidence 6422 2344443 22 25667765421 3344488999987654 2110 01111
Q ss_pred eeEEeeeCCCCCceeeEEEEeeccCCCceEEEEEECCCeEEEEe
Q 002318 155 IKLLFELNELPEAFMGLQMETASLSNGTRYYVMAVTPTRLYSFT 198 (936)
Q Consensus 155 ~k~v~~l~~~~~~I~gi~~~~~~~~~~~~~~i~ast~~rly~f~ 198 (936)
...+ .+.. ..+|..|..- ....+.++...++|.|-
T Consensus 170 ~~p~-~~~~-~~~i~~va~G-------~~hs~alt~~G~v~~wG 204 (423)
T 3mvd_K 170 RTPI-DLME-GTVCCSIASG-------ADHLVILTTAGKVFTVG 204 (423)
T ss_dssp EEEE-ESST-TCCEEEEEEC-------SSEEEEEETTSCEEEEE
T ss_pred ceee-EecC-CCcEEEEecC-------CCeEEEEecCCeEEEee
Confidence 1222 2221 1345555542 24566668889999994
No 428
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=53.04 E-value=63 Score=38.27 Aligned_cols=47 Identities=13% Similarity=0.142 Sum_probs=36.5
Q ss_pred HchhhHHHHHHhcCCh------------hhHHHHHHHHHHHHHhcCCHHHHHHHHHHhc
Q 002318 372 LDMKEYAAALANCRDP------------LQRDQVYLVQAEAAFATKDFHRAASFYAKIN 418 (936)
Q Consensus 372 l~~~~f~~Al~~~~~~------------~~~~~I~~~~~~~L~~~g~y~~Aa~~y~~~~ 418 (936)
+..|+|++|++..+.. ..-..+....|.-++..|+|++|...|.+..
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al 460 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLA 460 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHh
Confidence 5778999998775421 1223677888999999999999999998875
No 429
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=53.01 E-value=1.9e+02 Score=30.06 Aligned_cols=96 Identities=7% Similarity=-0.037 Sum_probs=55.8
Q ss_pred ceeEEEEe--CCEEEEEe--cCCeEEEEeCCCCCceeeEcCCCC-----CCccceeEEEeCCCCCeEEEEeecCCCccEE
Q 002318 23 VITCMSAG--NDVIVLGT--SKGWLIRHDFGAGDSYDIDLSAGR-----PGEQSIHKVFVDPGGSHCIATIVGSGGAETF 93 (936)
Q Consensus 23 ~i~~l~v~--~n~l~l~~--~~g~l~ridl~~~~~~~~~l~~~~-----~~~~~i~~i~lDp~G~hlli~~~~~~~g~~~ 93 (936)
....+++. ++.+|++- .++.|.++|.+...+..+..+-.. ..-.....|.+||.+.+++|+-. +++...
T Consensus 144 ~P~~ia~~~~~g~lyv~d~~~~~~I~~~~~~g~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~--~~~~I~ 221 (329)
T 3fvz_A 144 QPTDVAVEPSTGAVFVSDGYCNSRIVQFSPSGKFVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADR--ENGRIQ 221 (329)
T ss_dssp SEEEEEECTTTCCEEEEECSSCCEEEEECTTSCEEEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEET--TTTEEE
T ss_pred CCcEEEEeCCCCeEEEEeCCCCCeEEEEcCCCCEEEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEEC--CCCEEE
Confidence 46789998 47777777 489999999744434333221100 01134789999999667777754 145555
Q ss_pred EEecCCCC-ceecc-CCCCceEEEEEecC
Q 002318 94 YTHAKWSK-PRVLS-KLKGLVVNAVAWNR 120 (936)
Q Consensus 94 Y~~~~~~k-~k~L~-klkg~~I~sVaw~~ 120 (936)
-+....-+ .+.+. ...|..+.+++|.+
T Consensus 222 ~~~~~~G~~~~~~~~~~~~~~~~~~~~~p 250 (329)
T 3fvz_A 222 CFKTDTKEFVREIKHASFGRNVFAISYIP 250 (329)
T ss_dssp EEETTTCCEEEEECCTTTTTCEEEEEEET
T ss_pred EEECCCCcEEEEEeccccCCCcceeeecC
Confidence 55544222 22221 11344677888874
No 430
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=52.92 E-value=85 Score=33.27 Aligned_cols=19 Identities=16% Similarity=0.235 Sum_probs=15.1
Q ss_pred HHHHHHhcccHHHHHHHHh
Q 002318 540 VVHHYIQQGEAKKALQMLR 558 (936)
Q Consensus 540 ll~~yi~~~~~~~AL~~L~ 558 (936)
++..++..|+|++|-+.|.
T Consensus 217 Lln~~~~~g~~~eAe~~L~ 235 (310)
T 3mv2_B 217 LLNLHLQQRNIAEAQGIVE 235 (310)
T ss_dssp HHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHH
Confidence 3346889999999988875
No 431
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=52.81 E-value=47 Score=39.43 Aligned_cols=49 Identities=22% Similarity=0.264 Sum_probs=39.8
Q ss_pred HHHchhhHHHHHHhcCChh----hHHHHHHHHHHHHHhcCCHHHHHHHHHHhc
Q 002318 370 VYLDMKEYAAALANCRDPL----QRDQVYLVQAEAAFATKDFHRAASFYAKIN 418 (936)
Q Consensus 370 ~ll~~~~f~~Al~~~~~~~----~~~~I~~~~~~~L~~~g~y~~Aa~~y~~~~ 418 (936)
.|++.|+|++|++..+... .-...+...|.-++..|+|++|...|.+..
T Consensus 442 ~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al 494 (681)
T 2pzi_A 442 ALLDLGDVAKATRKLDDLAERVGWRWRLVWYRAVAELLTGDYDSATKHFTEVL 494 (681)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHhcCCHHHHHHHHHHHhccCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4788899999999876422 224677888999999999999999998875
No 432
>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3
Probab=52.68 E-value=3.8 Score=32.19 Aligned_cols=36 Identities=22% Similarity=0.453 Sum_probs=25.0
Q ss_pred ccccccccchhhhhcccccccccccCCCCCCCCEEEEcCC--C---hhHHHhHHHHHhhc
Q 002318 832 RDEDCGVCRRKILVAGRDYRMARGYASVGPMAPFYVFPCG--H---AFHAQCLIAHVTQC 886 (936)
Q Consensus 832 ~~~~C~~C~k~L~~~~~~~~~~~~~~~~~~~~~fvvFpCg--H---~fH~~CL~~~~~~~ 886 (936)
....|.+|...- + . ++ +-||. | .||..||...+...
T Consensus 5 ~~~~CrIC~~~~-~-----~------------~l-~~PC~C~gs~~~~H~~Cl~~W~~~~ 45 (60)
T 1vyx_A 5 DVPVCWICNEEL-G-----N------------ER-FRACGCTGELENVHRSCLSTWLTIS 45 (60)
T ss_dssp SCCEETTTTEEC-S-----C------------CC-CCSCCCSSGGGSCCHHHHHHHHHHH
T ss_pred CCCEeEEeecCC-C-----C------------ce-ecCcCCCCchhhhHHHHHHHHHHhC
Confidence 356799997541 1 1 44 57865 4 89999999988643
No 433
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=52.53 E-value=1.2e+02 Score=30.42 Aligned_cols=31 Identities=6% Similarity=-0.088 Sum_probs=26.6
Q ss_pred hhHHHHHHHHHHHHHhcCCHHHHHHHHHHhc
Q 002318 388 LQRDQVYLVQAEAAFATKDFHRAASFYAKIN 418 (936)
Q Consensus 388 ~~~~~I~~~~~~~L~~~g~y~~Aa~~y~~~~ 418 (936)
.....+....|..++..|+|++|...|.+..
T Consensus 24 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~ 54 (311)
T 3nf1_A 24 PARLRTLHNLVIQYASQGRYEVAVPLCKQAL 54 (311)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3456788889999999999999999998875
No 434
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=52.44 E-value=2e+02 Score=29.21 Aligned_cols=59 Identities=12% Similarity=-0.028 Sum_probs=34.6
Q ss_pred HHHHHHHHHhcccHHHHHHHHhCC----CCchh-------hHHhhHHHHH-hHChHHHHHHHHccCCCCCC
Q 002318 537 HEIVVHHYIQQGEAKKALQMLRKP----AVPID-------LQYKFAPDLI-MLDAYETVESWMTTNNLNPR 595 (936)
Q Consensus 537 y~~ll~~yi~~~~~~~AL~~L~~~----~d~~~-------li~k~~~~Ll-~~~p~~ti~ll~~~~~ld~~ 595 (936)
+..+...|...|+|++|++++.+. ++... .+...+..++ ..++.+++..+-+...++|.
T Consensus 161 ~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~ 231 (292)
T 1qqe_A 161 FIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPN 231 (292)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC---
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 344677888999999999987642 21111 2233333333 35778888888665455554
No 435
>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=52.40 E-value=2.4 Score=34.25 Aligned_cols=31 Identities=26% Similarity=0.755 Sum_probs=23.0
Q ss_pred ccccccccchhhhhcccccccccccCCCCCCCCEEEEcCCCh-hHHHhHHH
Q 002318 832 RDEDCGVCRRKILVAGRDYRMARGYASVGPMAPFYVFPCGHA-FHAQCLIA 881 (936)
Q Consensus 832 ~~~~C~~C~k~L~~~~~~~~~~~~~~~~~~~~~fvvFpCgH~-fH~~CL~~ 881 (936)
....|.+|..... ..++.||||. |...|+..
T Consensus 14 ~~~~C~IC~~~~~-------------------~~v~~pCgH~~~C~~C~~~ 45 (68)
T 2ea5_A 14 NSKDCVVCQNGTV-------------------NWVLLPCRHTCLCDGCVKY 45 (68)
T ss_dssp CSSCCSSSSSSCC-------------------CCEETTTTBCCSCTTHHHH
T ss_pred CCCCCCCcCcCCC-------------------CEEEECCCChhhhHHHHhc
Confidence 3567999975322 4566799999 99999984
No 436
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=52.38 E-value=11 Score=32.49 Aligned_cols=50 Identities=20% Similarity=0.311 Sum_probs=39.4
Q ss_pred HHHHchhhHHHHHHhcCCh----hhHHHHHHHHHHHHHhcCCHHHHHHHHHHhc
Q 002318 369 KVYLDMKEYAAALANCRDP----LQRDQVYLVQAEAAFATKDFHRAASFYAKIN 418 (936)
Q Consensus 369 ~~ll~~~~f~~Al~~~~~~----~~~~~I~~~~~~~L~~~g~y~~Aa~~y~~~~ 418 (936)
..+...|+|++|++..+.. ..-..+....|..++..|+|++|...|.+..
T Consensus 54 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 107 (131)
T 2vyi_A 54 AAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLALSSLNKHVEAVAYYKKAL 107 (131)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 3467889999999987631 1224677888999999999999999988765
No 437
>3oky_B Putative uncharacterized protein; transmembrane, ligand, SEMA-domain, cell-CELL signalling, SI protein; HET: NAG; 2.19A {Mus musculus} PDB: 3okw_A* 3afc_A* 3al8_A*
Probab=52.36 E-value=11 Score=43.75 Aligned_cols=62 Identities=15% Similarity=0.240 Sum_probs=43.1
Q ss_pred eeEEEEeC--------CEEEEEecCCeEEEEeCCC--C----C---ceeeEcCCC------CCCccceeEEEeCCCCCeE
Q 002318 24 ITCMSAGN--------DVIVLGTSKGWLIRHDFGA--G----D---SYDIDLSAG------RPGEQSIHKVFVDPGGSHC 80 (936)
Q Consensus 24 i~~l~v~~--------n~l~l~~~~g~l~ridl~~--~----~---~~~~~l~~~------~~~~~~i~~i~lDp~G~hl 80 (936)
.|++||.. .+|++||.+|+|+++=+.+ + + ++++++-.. .....+|..+-+|+.+.+|
T Consensus 405 lT~IaVd~~~g~~~~ytVlFLGTd~G~l~Kvv~~~~~~~~~~~~~~iEEi~vf~~~~~~~~~~~~~pI~~L~ls~~~~~L 484 (565)
T 3oky_B 405 LTKIAVDNAAGPYQNHTVVFLGSEKGIILKFLARIGSSGFLNGSLFLEEMNVYNPEKCSYDGVEDKRIMGMQLDRASGSL 484 (565)
T ss_dssp EEEEEEEEEETTTTCEEEEEEEETTSEEEEEEECC-----CCCCEEEEEEECCCHHHHCBTTBCCCCCCEEEEEGGGTEE
T ss_pred eEEEEEEEEecCCCceEEEEEECCCCeEEEEEecCCCCccccccEEEEEEEEeccccccccccCCCceEEEEEcCCCCEE
Confidence 68888873 6899999999999884421 1 1 234554321 0013578899999999999
Q ss_pred EEEee
Q 002318 81 IATIV 85 (936)
Q Consensus 81 li~~~ 85 (936)
.|.+.
T Consensus 485 YV~s~ 489 (565)
T 3oky_B 485 YVAFS 489 (565)
T ss_dssp EEECS
T ss_pred EEEec
Confidence 99887
No 438
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=51.84 E-value=78 Score=34.22 Aligned_cols=24 Identities=21% Similarity=0.342 Sum_probs=20.6
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHhc
Q 002318 395 LVQAEAAFATKDFHRAASFYAKIN 418 (936)
Q Consensus 395 ~~~~~~L~~~g~y~~Aa~~y~~~~ 418 (936)
...|..++.+|+|.+|.+.|.+..
T Consensus 8 l~~a~~l~~~~~y~eA~~~~~~~l 31 (434)
T 4b4t_Q 8 LEEARRLVNEKQYNEAEQVYLSLL 31 (434)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHH
Confidence 456888999999999999998764
No 439
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=51.63 E-value=2.3e+02 Score=29.64 Aligned_cols=86 Identities=9% Similarity=0.074 Sum_probs=50.2
Q ss_pred CceeEEEEeC---CEEEEEec------CCeEEEEeCCCCCceeeEcCCCCCCccceeEEEeCCCCCeEEEEeecCCCcc-
Q 002318 22 GVITCMSAGN---DVIVLGTS------KGWLIRHDFGAGDSYDIDLSAGRPGEQSIHKVFVDPGGSHCIATIVGSGGAE- 91 (936)
Q Consensus 22 ~~i~~l~v~~---n~l~l~~~------~g~l~ridl~~~~~~~~~l~~~~~~~~~i~~i~lDp~G~hlli~~~~~~~g~- 91 (936)
..+.+++++. +.++++.. ...|+.+|+.......+ ... .....+......|.|.+++..+...+...
T Consensus 188 ~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l--~~~-~~~~~~~~~~~spdg~~l~~~~~~~~~~~~ 264 (388)
T 3pe7_A 188 QWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGTNMRKV--KTH-AEGESCTHEFWVPDGSALVYVSYLKGSPDR 264 (388)
T ss_dssp SCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSCCCEES--CCC-CTTEEEEEEEECTTSSCEEEEEEETTCCCE
T ss_pred ccccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCCceEEe--eeC-CCCcccccceECCCCCEEEEEecCCCCCcc
Confidence 4577888877 34555544 23899999844433322 211 11135677788999998866655221122
Q ss_pred -EEEEecCCCCceeccCCCC
Q 002318 92 -TFYTHAKWSKPRVLSKLKG 110 (936)
Q Consensus 92 -~~Y~~~~~~k~k~L~klkg 110 (936)
.|.++....+.+.+..+.+
T Consensus 265 ~l~~~d~~~g~~~~l~~~~~ 284 (388)
T 3pe7_A 265 FIYSADPETLENRQLTSMPA 284 (388)
T ss_dssp EEEEECTTTCCEEEEEEECC
T ss_pred eEEEEecCCCceEEEEcCCC
Confidence 6566666666666665555
No 440
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=50.94 E-value=12 Score=33.87 Aligned_cols=49 Identities=16% Similarity=0.112 Sum_probs=38.6
Q ss_pred HHHchhhHHHHHHhcCChh----hHHHHHHHHHHHHHhcCCHHHHHHHHHHhc
Q 002318 370 VYLDMKEYAAALANCRDPL----QRDQVYLVQAEAAFATKDFHRAASFYAKIN 418 (936)
Q Consensus 370 ~ll~~~~f~~Al~~~~~~~----~~~~I~~~~~~~L~~~g~y~~Aa~~y~~~~ 418 (936)
.+...|+|++|+...+... .-..+....|.-++..|+|++|...|.+..
T Consensus 61 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al 113 (142)
T 2xcb_A 61 CRQSLGLYEQALQSYSYGALMDINEPRFPFHAAECHLQLGDLDGAESGFYSAR 113 (142)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4778899999998876321 223567788999999999999999998765
No 441
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=50.20 E-value=27 Score=32.26 Aligned_cols=49 Identities=20% Similarity=0.310 Sum_probs=38.3
Q ss_pred HHHchhhHHHHHHhcCChh----------------------hHHHHHHHHHHHHHhcCCHHHHHHHHHHhc
Q 002318 370 VYLDMKEYAAALANCRDPL----------------------QRDQVYLVQAEAAFATKDFHRAASFYAKIN 418 (936)
Q Consensus 370 ~ll~~~~f~~Al~~~~~~~----------------------~~~~I~~~~~~~L~~~g~y~~Aa~~y~~~~ 418 (936)
.++++|+|++|+...+... ....++...|.-++..|+|++|...|.+..
T Consensus 20 ~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al 90 (162)
T 3rkv_A 20 ELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVL 90 (162)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 4788899999888754211 123678888999999999999999998875
No 442
>3l6v_A GYRA, DNA gyrase subunit A; gyrase A C-terminal domain, GYRA C-terminal domain, DNA wrapping, beta-strand-bearing proline, ATP-binding; HET: DNA; 2.19A {Xanthomonas campestris PV}
Probab=49.77 E-value=2.8e+02 Score=30.00 Aligned_cols=166 Identities=11% Similarity=0.059 Sum_probs=89.9
Q ss_pred CceeEEEEe-----CCEEEEEecCCeEEEEeC-C-CC--CceeeEcCCCCCCccceeEEEeCCCCCeEEEEeecCCCccE
Q 002318 22 GVITCMSAG-----NDVIVLGTSKGWLIRHDF-G-AG--DSYDIDLSAGRPGEQSIHKVFVDPGGSHCIATIVGSGGAET 92 (936)
Q Consensus 22 ~~i~~l~v~-----~n~l~l~~~~g~l~ridl-~-~~--~~~~~~l~~~~~~~~~i~~i~lDp~G~hlli~~~~~~~g~~ 92 (936)
+.|.++.+- +..++++|.+|.+-|..+ . +. .-..+-+..+ . .+.+-.+.+-....++++.|+ +|..
T Consensus 99 e~Iv~~~~~~~~~~~~~ll~~T~~G~vKrt~l~e~~~~~~~G~~ai~L~-~-~d~lv~v~~~~~~~~i~l~T~---~G~~ 173 (370)
T 3l6v_A 99 ERVQAVLPVREYADNRYVFMATRNGTVKKTPLSEFAFRLARGKIAINLD-E-GDALVGVALTDGDRDVLLFAS---NGKT 173 (370)
T ss_dssp CCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGCSCCTTCEESSCCC-T-TCCEEEEEEECSCCEEEEEET---TSEE
T ss_pred CEEEEEEEeccCCCCcEEEEEeCCCeEEEeEHHHhhcccCCceEEEEeC-C-CCEEEEEEEeCCCceEEEEeC---CCeE
Confidence 455555442 358999999999999987 1 11 1111111111 1 345555555445667888887 7887
Q ss_pred EEEecCC-------CCceeccCC-CCceEEEEEecCCCC--------C---------------------CCCcceEEEEc
Q 002318 93 FYTHAKW-------SKPRVLSKL-KGLVVNAVAWNRQQI--------T---------------------EASTKEIILGT 135 (936)
Q Consensus 93 ~Y~~~~~-------~k~k~L~kl-kg~~I~sVaw~~~~~--------~---------------------~~st~~iLiGt 135 (936)
.-+.... .+--.+.+| .|-.|.+++..+... . ......+|+.|
T Consensus 174 irf~~~~v~~~gR~a~GV~~i~L~~~d~Vv~~~~~~~~~~~~~~~~~~~~~~~~~t~~g~~~~~~~~~~~~~~~~il~vT 253 (370)
T 3l6v_A 174 VRFGESTVRSMGRTATGVRGIRLAKGEEVVSLIVSERAGGVEDEVEDESAEEVVETTDGAEPAVIDVADNGDVAYILTAT 253 (370)
T ss_dssp EEEEGGGSCBCCTTCCCEECCCCCTTCCEEEEEEECCC-----------------------------------CEEEEEE
T ss_pred EEEEccccCccCCCCCCeeeEEeCCCCEEEEEEEeccccccccccccccccccccccccccccccccccccCCceEEEee
Confidence 6665321 122222233 244566665543100 0 00234799999
Q ss_pred CCCcEEEEEEecC---CcccceeeEEeeeCCCCCceeeEEEEeeccCCCceEEEEEECCCeEEEEe
Q 002318 136 DTGQLHEMAVDEK---DKREKYIKLLFELNELPEAFMGLQMETASLSNGTRYYVMAVTPTRLYSFT 198 (936)
Q Consensus 136 ~~G~i~e~~i~~~---~~~~~~~k~v~~l~~~~~~I~gi~~~~~~~~~~~~~~i~ast~~rly~f~ 198 (936)
++|..--+.+..- .+.-+-++. +++.+..+.+-++.+. ++...++++|...++..+.
T Consensus 254 e~G~gKrt~~~e~~~~~Rg~kGv~~-~k~~~~~g~lv~~~~v-----~~~d~i~liT~~G~~iR~~ 313 (370)
T 3l6v_A 254 ENGYGKRTPLAEYPRKGRGTQGVIG-IQTTERNGKLVRAVLL-----GSTDEVMLISDGGTLVRTR 313 (370)
T ss_dssp TTSEEEEEEGGGSCCBCTTSCCEES-SCCCTTTCSEEEEEEE-----CTTCEEEEEETTCCEEEEE
T ss_pred CCCCEEEEEHHHhcccccCCcceEE-EEecCCCCcEEEEEEe-----CCCceEEEEcCCCeEEEee
Confidence 9997776666421 112223333 3555444667777665 2234566668888888674
No 443
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=49.61 E-value=11 Score=33.78 Aligned_cols=49 Identities=10% Similarity=0.097 Sum_probs=39.2
Q ss_pred HHHchhhHHHHHHhcCChh----hHHHHHHHHHHHHHhcCCHHHHHHHHHHhc
Q 002318 370 VYLDMKEYAAALANCRDPL----QRDQVYLVQAEAAFATKDFHRAASFYAKIN 418 (936)
Q Consensus 370 ~ll~~~~f~~Al~~~~~~~----~~~~I~~~~~~~L~~~g~y~~Aa~~y~~~~ 418 (936)
.++..|+|++|++.++... .-..+....|.-++..|+|++|...|.+..
T Consensus 74 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al 126 (148)
T 2dba_A 74 CHLKLEDYDKAETEASKAIEKDGGDVKALYRRSQALEKLGRLDQAVLDLQRCV 126 (148)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHccHHHHHHHHHHHHhhCccCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4778899999999876321 224677888999999999999999998765
No 444
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=49.50 E-value=1.5e+02 Score=30.46 Aligned_cols=28 Identities=14% Similarity=0.300 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHhc
Q 002318 391 DQVYLVQAEAAFATKDFHRAASFYAKIN 418 (936)
Q Consensus 391 ~~I~~~~~~~L~~~g~y~~Aa~~y~~~~ 418 (936)
..+...+|..+...|++++|...|.+..
T Consensus 99 ~~~~~~~~~~~~~~~~~~~A~~~~~~al 126 (308)
T 2ond_A 99 MLLYFAYADYEESRMKYEKVHSIYNRLL 126 (308)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 3577788888888888888888888875
No 445
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=49.38 E-value=14 Score=34.17 Aligned_cols=49 Identities=14% Similarity=0.044 Sum_probs=38.7
Q ss_pred HHHchhhHHHHHHhcCChh----hHHHHHHHHHHHHHhcCCHHHHHHHHHHhc
Q 002318 370 VYLDMKEYAAALANCRDPL----QRDQVYLVQAEAAFATKDFHRAASFYAKIN 418 (936)
Q Consensus 370 ~ll~~~~f~~Al~~~~~~~----~~~~I~~~~~~~L~~~g~y~~Aa~~y~~~~ 418 (936)
.+...|+|++|++..+... .-.......|.-++..|++++|...|.+..
T Consensus 64 ~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al 116 (148)
T 2vgx_A 64 CRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAAECLLQXGELAEAESGLFLAQ 116 (148)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 5678899999999876321 223567778999999999999999998765
No 446
>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B
Probab=49.04 E-value=2.8 Score=45.56 Aligned_cols=31 Identities=29% Similarity=0.729 Sum_probs=23.8
Q ss_pred ccccccccchhhhhcccccccccccCCCCCCCCEEEEcCCCh-hHHHhHHH
Q 002318 832 RDEDCGVCRRKILVAGRDYRMARGYASVGPMAPFYVFPCGHA-FHAQCLIA 881 (936)
Q Consensus 832 ~~~~C~~C~k~L~~~~~~~~~~~~~~~~~~~~~fvvFpCgH~-fH~~CL~~ 881 (936)
....|.+|...... .+..||||. |...|+..
T Consensus 294 ~~~~C~IC~~~~~~-------------------~v~lpCgH~~fC~~C~~~ 325 (345)
T 3t6p_A 294 EERTCKVCMDKEVS-------------------VVFIPCGHLVVCQECAPS 325 (345)
T ss_dssp TTCBCTTTSSSBCC-------------------EEEETTCCEEECTTTGGG
T ss_pred CCCCCCccCCcCCc-------------------eEEcCCCChhHhHHHHhc
Confidence 34689999876544 345599999 99999874
No 447
>2xzh_A Clathrin heavy chain 1; endocytosis, endocytosis inhibition; HET: VH2; 1.69A {Homo sapiens} PDB: 2xzg_A* 3gc3_B 1utc_A 3gd1_I 1c9i_A 1c9l_A
Probab=49.03 E-value=2.8e+02 Score=29.78 Aligned_cols=298 Identities=11% Similarity=0.103 Sum_probs=155.3
Q ss_pred EeCCEEEEEecCC---eEEEEeC-CCCCceeeEcCCCCCCccceeEEEeCCCCCeEEEEeecCCCccEEEEecCCC-Cce
Q 002318 29 AGNDVIVLGTSKG---WLIRHDF-GAGDSYDIDLSAGRPGEQSIHKVFVDPGGSHCIATIVGSGGAETFYTHAKWS-KPR 103 (936)
Q Consensus 29 v~~n~l~l~~~~g---~l~ridl-~~~~~~~~~l~~~~~~~~~i~~i~lDp~G~hlli~~~~~~~g~~~Y~~~~~~-k~k 103 (936)
-+++++|+=-..| +|..+|+ +|+++.+-++.. ...-+.|+-.-+.+... ...--.+.... |.|
T Consensus 34 ESDkyicVrE~~~~~~~VvIiDl~n~~~~~Rrpi~A--------dsAIMnP~~~ViALrag----~~LQiFnletK~klk 101 (365)
T 2xzh_A 34 ESDKFICIREKVGEQAQVVIIDMNDPSNPIRRPISA--------DSAIMNPASKVIALKAG----KTLQIFNIEMKSKMK 101 (365)
T ss_dssp EETTEEEEEEEETTEEEEEEEETTSTTSCEEEECCC--------SEEEECSSSSEEEEEET----TEEEEEETTTTEEEE
T ss_pred ecCceEEEEecCCCCCEEEEEECCCCCCcccccccc--------ceeeeCCCccEEEEecC----CeEEEechHHhhhhc
Confidence 4566777766444 8999999 999987776652 22456898875554431 33333444332 222
Q ss_pred eccCCCCceEEEEEecCCCCCCCCcceEEEEcCCCcEEEEEEecCCcccceeeEEeeeCCCCCceeeEEEEeeccCCCce
Q 002318 104 VLSKLKGLVVNAVAWNRQQITEASTKEIILGTDTGQLHEMAVDEKDKREKYIKLLFELNELPEAFMGLQMETASLSNGTR 183 (936)
Q Consensus 104 ~L~klkg~~I~sVaw~~~~~~~~st~~iLiGt~~G~i~e~~i~~~~~~~~~~k~v~~l~~~~~~I~gi~~~~~~~~~~~~ 183 (936)
.-. -.-+|.-=.|-.+ ..+-+=|.+. +|.-.+++...+.+-+..--+|.+ ..|.+-..+ .+.+
T Consensus 102 s~~--~~e~VvfWkWis~-------~~L~lVT~ta-VyHWs~~~~s~P~kvFdR~~~L~~--~QIInY~~d-----~~~k 164 (365)
T 2xzh_A 102 AHT--MTDDVTFWKWISL-------NTVALVTDNA-VYHWSMEGESQPVKMFDRHSSLAG--CQIINYRTD-----AKQK 164 (365)
T ss_dssp EEE--CSSCEEEEEECSS-------SEEEEEESSE-EEEEESSTTCCCEEEEECCGGGTT--CEEEEEEEC-----TTSC
T ss_pred cee--cCCccEEEEecCC-------CeEEEEcCCc-EEEEcccCCCCCceeeecchhccc--ceEEEEEEC-----CCCC
Confidence 211 1125555556522 2444445555 888888654222222222122332 335544443 3345
Q ss_pred EEEEEEC---CCeEEEEecCCchHHHHhhhhcccc-------cccccCCCcCCCcceeeeccCCCc---eEEEeecCc--
Q 002318 184 YYVMAVT---PTRLYSFTGFGSLDTVFASYLDRAV-------HFMELPGEILNSELHFFIKQRRAV---HFAWLSGAG-- 248 (936)
Q Consensus 184 ~~i~ast---~~rly~f~~~~~l~~~f~~~~~~~~-------~~~el~~~~~~s~~~~~~~~~~~~---~faW~t~~g-- 248 (936)
|++++-- ..++ .| .-+||+.-++... .|..+.- .+...|+ .|||-+..|
T Consensus 165 W~~l~GI~~~~~~v---~G---~mQLYS~er~~sQ~ieGhaa~F~~~~~----------~g~~~~~~lf~fa~r~~~g~k 228 (365)
T 2xzh_A 165 WLLLTGISAQQNRV---VG---AMQLYSVDRKVSQPIEGHAASFAQFKM----------EGNAEESTLFCFAVRGQAGGK 228 (365)
T ss_dssp EEEEEEEEEETTEE---EE---EEEEEETTTTEEEEECCSEEEEEEECC----------TTCSSCEEEEEEEEEETTEEE
T ss_pred EEEEEeEeccCCcc---ce---eEEEEeecccccceeeeeeeeeEEEec----------CCCCCCceEEEEEEecCCCcE
Confidence 6555322 2222 23 1223332222111 1211111 1111122 466766654
Q ss_pred eEEEEeccCCCCCCCCCCCccccccccccccccCCCCCCCCccccccC-CceEEEEE--CCEEEEEecCCCcEEEEEEec
Q 002318 249 IYHGGLNFGAQRSSPNGDENFVENKALLSYSKLSEGAEAVKPGSMAVS-EYHFLLLM--GNKVKVVNRISEQIIEELQFD 325 (936)
Q Consensus 249 i~~g~i~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~p~si~lT-~fHillL~--~~~l~ivn~l~~~vv~~~~~~ 325 (936)
+-+=+++..+. ..+.+... ..+. .+|+....+=|++|-++ .|-++.+. ..-|.+++..++..+|...+.
T Consensus 229 LhIiEi~~~~~-----~~~~f~kk--~vdi-~fppea~~DFPVamqvs~kygviyviTK~G~ihlyDleTgt~i~~nrIS 300 (365)
T 2xzh_A 229 LHIIEVGTPPT-----GNQPFPKK--AVDV-FFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYMNRIS 300 (365)
T ss_dssp EEEEECSSCCT-----TCCCCCCE--EEEE-CCCTTCTTCCEEEEEEETTTTEEEEEETTSEEEEEETTTCCEEEEEECC
T ss_pred EEEEEcCCCCC-----CCCCcccc--ccee-eCCccccCCceEEEEecccCCEEEEEeCCcEEEEEEcccCcEEEEeccC
Confidence 33323322110 12222111 1111 12222223348888666 44455443 588888999999999988873
Q ss_pred CCCCCcccceeEEEeecCCCeEEEEeCCcEEEEEcccchhhHHHHHHchhhHHHHHHhcC
Q 002318 326 QTSDSISRGIIGLCSDATAGVFYAYDQNSIFQVSVNDEGRDMWKVYLDMKEYAAALANCR 385 (936)
Q Consensus 326 ~~~~~~~~~~~gl~~D~~~~~~~i~S~~~i~~~~~~~e~~~~W~~ll~~~~f~~Al~~~~ 385 (936)
.+.+.--+.+..++-+.++..++-+....-||+..+=++.-...+-+.|+++|.
T Consensus 301 ------~d~iF~ta~~~~~~Gi~~Vnr~GqVl~v~v~~~~ivpyi~~~l~n~~LA~~lA~ 354 (365)
T 2xzh_A 301 ------GETIFVTAPHEATAGIIGVNRKGQVLSVCVEEENIIPYITNVLQNPDLALRMAV 354 (365)
T ss_dssp ------SSCEEEEEEEGGGTEEEEEETTCEEEEEEECTTTHHHHHHHTTCCHHHHHHHHH
T ss_pred ------CCceEEecccCCCCcEEEEcCCCEEEEEEECcccEehhhhhcCCCHHHHHHHHH
Confidence 234443344556788999999998888888888888865556678889999874
No 448
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Probab=48.93 E-value=2.4e+02 Score=33.38 Aligned_cols=161 Identities=11% Similarity=0.118 Sum_probs=84.5
Q ss_pred CceeEEEEeCCEEEEEecC-----CeEEEEeCC---CCCceee-EcC-CCCCCccceeEEEeCCCCCeEEEEeecCCC--
Q 002318 22 GVITCMSAGNDVIVLGTSK-----GWLIRHDFG---AGDSYDI-DLS-AGRPGEQSIHKVFVDPGGSHCIATIVGSGG-- 89 (936)
Q Consensus 22 ~~i~~l~v~~n~l~l~~~~-----g~l~ridl~---~~~~~~~-~l~-~~~~~~~~i~~i~lDp~G~hlli~~~~~~~-- 89 (936)
+.+++..-.++.++..... +.|+|.+.. ..+...+ +.. ....+...+..+...|.|..++.+++.+|+
T Consensus 109 ~~~~~p~pdG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lld~~~l~~~~~~~~~~~~~SPDG~~la~~~~~~G~e~ 188 (741)
T 1yr2_A 109 ERFGLPQRRGASVFYSWNSGLMNQSQLLVRPADAPVGTKGRVLLDPNTWAKDGATALDAWAASDDGRLLAYSVQDGGSDW 188 (741)
T ss_dssp CEECCCEEETTEEEEEEECSSCSSCEEEEEETTSCTTCCCEEEECGGGCC----EEEEEEEECTTSSEEEEEEEETTCSE
T ss_pred cccCCCEEECCEEEEEEEcCCCeEEEEEEEcCCccCCCCCEEEECHHHhccCCCEEEEeEEECCCCCEEEEEEcCCCCce
Confidence 4456666778888766643 468888873 3322211 111 011112367788889999999888763222
Q ss_pred ccEEEEecCCCCceeccCCCCceEEEEEecCCCCCCCCcceEEEEcCCCc--------------EEEEEEecCCccccee
Q 002318 90 AETFYTHAKWSKPRVLSKLKGLVVNAVAWNRQQITEASTKEIILGTDTGQ--------------LHEMAVDEKDKREKYI 155 (936)
Q Consensus 90 g~~~Y~~~~~~k~k~L~klkg~~I~sVaw~~~~~~~~st~~iLiGt~~G~--------------i~e~~i~~~~~~~~~~ 155 (936)
...+-++....+..... ..+..+.+++|.+ + +.|+.++.++. ||...+.... .+ -
T Consensus 189 ~~i~v~dl~tg~~~~~~-~~~~~~~~~~wsp------D-~~l~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~-~~--~ 257 (741)
T 1yr2_A 189 RTVKFVGVADGKPLADE-LKWVKFSGLAWLG------N-DALLYSRFAEPKEGQAFQALNYNQTVWLHRLGTPQ-SA--D 257 (741)
T ss_dssp EEEEEEETTTCCEEEEE-EEEEESCCCEEST------T-SEEEEEECCCC--------CCCCCEEEEEETTSCG-GG--C
T ss_pred EEEEEEECCCCCCCCcc-CCCceeccEEEEC------C-CEEEEEEecCcccccccccCCCCCEEEEEECCCCc-hh--C
Confidence 23444555544433321 1222235788984 2 37777765543 5555543321 11 1
Q ss_pred eEEeeeCCCCCceeeEEEEeeccCCCceEEEEEEC-----CCeEEEEe
Q 002318 156 KLLFELNELPEAFMGLQMETASLSNGTRYYVMAVT-----PTRLYSFT 198 (936)
Q Consensus 156 k~v~~l~~~~~~I~gi~~~~~~~~~~~~~~i~ast-----~~rly~f~ 198 (936)
+.++..++.+..+.++.|. .+.+++++.+. ...+|.+.
T Consensus 258 ~lv~~~~~~~~~~~~~~~S-----pDG~~l~~~~~~~~~~~~~l~~~d 300 (741)
T 1yr2_A 258 QPVFATPELPKRGHGASVS-----SDGRWVVITSSEGTDPVNTVHVAR 300 (741)
T ss_dssp EEEECCTTCTTCEEEEEEC-----TTSCEEEEEEECTTCSCCEEEEEE
T ss_pred EEEeccCCCCeEEEEEEEC-----CCCCEEEEEEEccCCCcceEEEEE
Confidence 3455554422346777775 23356666653 23666553
No 449
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=48.55 E-value=68 Score=33.30 Aligned_cols=23 Identities=17% Similarity=0.117 Sum_probs=17.5
Q ss_pred HHHHHHHHHhcccHHHHHHHHhC
Q 002318 537 HEIVVHHYIQQGEAKKALQMLRK 559 (936)
Q Consensus 537 y~~ll~~yi~~~~~~~AL~~L~~ 559 (936)
+..+...|...|+|++|++++.+
T Consensus 158 ~~~lg~~~~~~g~~~~A~~~~~~ 180 (307)
T 2ifu_A 158 IGKASRLLVRQQKFDEAAASLQK 180 (307)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHH
Confidence 33466788888999999888764
No 450
>1wil_A KIAA1045 protein; ring finger domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: g.50.1.3
Probab=48.49 E-value=4.2 Score=33.89 Aligned_cols=33 Identities=36% Similarity=0.727 Sum_probs=23.3
Q ss_pred ecccccccccchhhhhcccccccccccCCCCCCCCEEEEc---CCChhHHHhHHHH
Q 002318 830 IDRDEDCGVCRRKILVAGRDYRMARGYASVGPMAPFYVFP---CGHAFHAQCLIAH 882 (936)
Q Consensus 830 i~~~~~C~~C~k~L~~~~~~~~~~~~~~~~~~~~~fvvFp---CgH~fH~~CL~~~ 882 (936)
|..+..|.+|..-=.. ..|| |+-+||..||.+.
T Consensus 12 ~~~D~~C~VC~~~t~~--------------------~l~pCRvC~RvfH~~CL~r~ 47 (89)
T 1wil_A 12 VVNDEMCDVCEVWTAE--------------------SLFPCRVCTRVFHDGCLRRM 47 (89)
T ss_dssp CCCSCCCTTTCCCCSS--------------------CCSSCSSSSSCCCHHHHHHH
T ss_pred CCCCcccCcccccccc--------------------ceeccccccccccHhhcccc
Confidence 3457889999842111 2455 7899999999875
No 451
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=48.48 E-value=23 Score=34.16 Aligned_cols=49 Identities=12% Similarity=0.103 Sum_probs=39.2
Q ss_pred HHHchhhHHHHHHhcCCh-hhHHHHHHHHHHHHHhcCCHHHHHHHHHHhc
Q 002318 370 VYLDMKEYAAALANCRDP-LQRDQVYLVQAEAAFATKDFHRAASFYAKIN 418 (936)
Q Consensus 370 ~ll~~~~f~~Al~~~~~~-~~~~~I~~~~~~~L~~~g~y~~Aa~~y~~~~ 418 (936)
.++..|+|++|++..+.. .....+....|.-++..|+|++|...|.+..
T Consensus 15 ~~~~~~~~~~A~~~~~~a~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al 64 (213)
T 1hh8_A 15 LAADKKDWKGALDAFSAVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSI 64 (213)
T ss_dssp HHHHTTCHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHhCCHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 477889999999986531 1134688889999999999999999998875
No 452
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=48.26 E-value=3.5e+02 Score=30.68 Aligned_cols=100 Identities=16% Similarity=0.032 Sum_probs=65.0
Q ss_pred CCEEEEEecCCeEEEEeC-CCCCceeeEcCCCCCCccceeEEEeCCCCCeEEEEeecCCCccEEEEec--CCCC-ceecc
Q 002318 31 NDVIVLGTSKGWLIRHDF-GAGDSYDIDLSAGRPGEQSIHKVFVDPGGSHCIATIVGSGGAETFYTHA--KWSK-PRVLS 106 (936)
Q Consensus 31 ~n~l~l~~~~g~l~ridl-~~~~~~~~~l~~~~~~~~~i~~i~lDp~G~hlli~~~~~~~g~~~Y~~~--~~~k-~k~L~ 106 (936)
+.+++.+..+|+|..||. ....+..++.. ..++.+-++|.|++++++.. ++.+.-+.. ...+ .+.+.
T Consensus 149 ~~~~vs~~~d~~V~v~D~~t~~~~~~i~~g------~~~~~v~~spdg~~l~v~~~---d~~V~v~D~~~~t~~~~~~i~ 219 (543)
T 1nir_A 149 NLFSVTLRDAGQIALVDGDSKKIVKVIDTG------YAVHISRMSASGRYLLVIGR---DARIDMIDLWAKEPTKVAEIK 219 (543)
T ss_dssp GEEEEEEGGGTEEEEEETTTCCEEEEEECS------TTEEEEEECTTSCEEEEEET---TSEEEEEETTSSSCEEEEEEE
T ss_pred CEEEEEEcCCCeEEEEECCCceEEEEEecC------cccceEEECCCCCEEEEECC---CCeEEEEECcCCCCcEEEEEe
Confidence 445555667789999999 55555556543 23788989999999999987 777777776 3332 22333
Q ss_pred CCCCceEEEEEecCCCCCCCCcceEEEEcC-CCcEEEE
Q 002318 107 KLKGLVVNAVAWNRQQITEASTKEIILGTD-TGQLHEM 143 (936)
Q Consensus 107 klkg~~I~sVaw~~~~~~~~st~~iLiGt~-~G~i~e~ 143 (936)
-|....+|+|++.. ..+.+.+.+|.. ++.|...
T Consensus 220 --~g~~p~~va~sp~~--~~dg~~l~v~~~~~~~v~v~ 253 (543)
T 1nir_A 220 --IGIEARSVESSKFK--GYEDRYTIAGAYWPPQFAIM 253 (543)
T ss_dssp --CCSEEEEEEECCST--TCTTTEEEEEEEESSEEEEE
T ss_pred --cCCCcceEEeCCCc--CCCCCEEEEEEccCCeEEEE
Confidence 36688999998410 001235666663 5766544
No 453
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=48.15 E-value=44 Score=32.01 Aligned_cols=49 Identities=12% Similarity=0.113 Sum_probs=39.7
Q ss_pred HHHchhhHHHHHHhcCCh----hhHHHHHHHHHHHHHhcCCHHHHHHHHHHhc
Q 002318 370 VYLDMKEYAAALANCRDP----LQRDQVYLVQAEAAFATKDFHRAASFYAKIN 418 (936)
Q Consensus 370 ~ll~~~~f~~Al~~~~~~----~~~~~I~~~~~~~L~~~g~y~~Aa~~y~~~~ 418 (936)
.++..|+|++|++..+.. .....+....|.-++..|+|++|...|.+..
T Consensus 46 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al 98 (213)
T 1hh8_A 46 MYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQTEKYDLAIKDLKEAL 98 (213)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 478889999999987632 1234677888999999999999999998875
No 454
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=47.86 E-value=9.4 Score=32.06 Aligned_cols=50 Identities=16% Similarity=0.114 Sum_probs=40.0
Q ss_pred HHHHchhhHHHHHHhcCC----hhh--HHHHHHHHHHHHHhc-CCHHHHHHHHHHhc
Q 002318 369 KVYLDMKEYAAALANCRD----PLQ--RDQVYLVQAEAAFAT-KDFHRAASFYAKIN 418 (936)
Q Consensus 369 ~~ll~~~~f~~Al~~~~~----~~~--~~~I~~~~~~~L~~~-g~y~~Aa~~y~~~~ 418 (936)
..++..|+|++|++..+. ... ...+....|.-++.. |++++|.+.+.+..
T Consensus 48 ~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~ 104 (112)
T 2kck_A 48 KALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKADALRYIEGKEVEAEIAEARAK 104 (112)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHHHHTTCSSCSHHHHHHHHHHG
T ss_pred HHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHHHHHHHhCCHHHHHHHHHHHh
Confidence 347788999999988652 122 457788899999999 99999999998875
No 455
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=47.49 E-value=15 Score=32.57 Aligned_cols=49 Identities=20% Similarity=0.343 Sum_probs=39.2
Q ss_pred HHHchhhHHHHHHhcCCh----hhHHHHHHHHHHHHHhcCCHHHHHHHHHHhc
Q 002318 370 VYLDMKEYAAALANCRDP----LQRDQVYLVQAEAAFATKDFHRAASFYAKIN 418 (936)
Q Consensus 370 ~ll~~~~f~~Al~~~~~~----~~~~~I~~~~~~~L~~~g~y~~Aa~~y~~~~ 418 (936)
.++..|+|++|+..++.. .....+....|.-++..|+|++|...|.+..
T Consensus 52 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~ 104 (137)
T 3q49_B 52 CYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAY 104 (137)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 477889999999887632 1234678889999999999999999988765
No 456
>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*
Probab=47.48 E-value=2.6e+02 Score=30.08 Aligned_cols=56 Identities=7% Similarity=0.075 Sum_probs=34.0
Q ss_pred eCCEEEEEe-------------cCCeEEEEeC-CC-CCceeeEcCCC--CCCccceeEEEeCC--CCC-eEEEEee
Q 002318 30 GNDVIVLGT-------------SKGWLIRHDF-GA-GDSYDIDLSAG--RPGEQSIHKVFVDP--GGS-HCIATIV 85 (936)
Q Consensus 30 ~~n~l~l~~-------------~~g~l~ridl-~~-~~~~~~~l~~~--~~~~~~i~~i~lDp--~G~-hlli~~~ 85 (936)
.++.+++++ ..|.|+++|+ .+ ..+.++.+.-. ....-..+.|.+.+ .|. .++|+--
T Consensus 59 ~~G~~~~s~~~~~pg~~~~~~~~~G~I~~~d~~~~~~~~~~l~~~g~~~~~~~f~PhGi~~~~d~dg~~~L~Vvnh 134 (355)
T 3sre_A 59 PNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLLVVNH 134 (355)
T ss_dssp TTSEEEEEECCC-----------CCEEEEEETTSSSCCEEECEEECSSCCGGGCCEEEEEEEECTTCCEEEEEEEC
T ss_pred CCCeEEEEeccccCCCcccCCCCCCeEEEEecCCCCCceEEEEccCCCCCcCceeeeeeEEEECCCCcEEEEEEEC
Confidence 357888887 7999999999 43 34555555321 11134678887744 454 4666643
No 457
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=47.44 E-value=41 Score=29.02 Aligned_cols=48 Identities=17% Similarity=0.252 Sum_probs=39.4
Q ss_pred HHHchhhHHHHHHhcCC-----hhhHHHHHHHHHHHHHhcCCHHHHHHHHHHhc
Q 002318 370 VYLDMKEYAAALANCRD-----PLQRDQVYLVQAEAAFATKDFHRAASFYAKIN 418 (936)
Q Consensus 370 ~ll~~~~f~~Al~~~~~-----~~~~~~I~~~~~~~L~~~g~y~~Aa~~y~~~~ 418 (936)
+|+..|+|++|++..+. |.. ..+....|.-++..|+|++|...|.+..
T Consensus 36 ~~~~~~~~~~A~~~~~~al~~~p~~-~~~~~~l~~~~~~~g~~~~A~~~~~~al 88 (117)
T 3k9i_A 36 TFRTLGEYRKAEAVLANGVKQFPNH-QALRVFYAMVLYNLGRYEQGVELLLKII 88 (117)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCc-hHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 46788999999998763 322 5678889999999999999999988765
No 458
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=47.35 E-value=1e+02 Score=31.60 Aligned_cols=113 Identities=14% Similarity=0.097 Sum_probs=51.7
Q ss_pred HHHHHhcccHHHHHHHHhCC----CCchhhHHhhHHHHHh-HChHHHHHHHHccCCCCCCcchhHhhh---cCCCCCCCC
Q 002318 541 VHHYIQQGEAKKALQMLRKP----AVPIDLQYKFAPDLIM-LDAYETVESWMTTNNLNPRKLIPAMMR---YSSEPHAKN 612 (936)
Q Consensus 541 l~~yi~~~~~~~AL~~L~~~----~d~~~li~k~~~~Ll~-~~p~~ti~ll~~~~~ld~~~li~~L~~---~~~~~~~~~ 612 (936)
...+...|++++|+..+.+. ++..+..+..+..++. ..+++++..+-+....+|......+.. +... .
T Consensus 124 a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~~~~l~~~----~ 199 (287)
T 3qou_A 124 AMQLMQESNYTDALPLLXDAWQLSNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQGLVAQIELLXQ----A 199 (287)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHHHHHHHHHHHHH----H
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHHHHHHHHHHHhh----c
Confidence 34455566666666655432 2223445555555443 455556655544333333221111100 0000 0
Q ss_pred ChHHHHHHHHHHHhhcCCCCHhHHHHHHHHhhcCCChHHHHHHHHH
Q 002318 613 ETHEVIKYLEFCVHRLHNEDPGVHNLLLSLYAKQEDDSALLRFLQC 658 (936)
Q Consensus 613 ~~~~~~~YLe~li~~~~~~~~~~hn~ll~Ly~~~~~~~~Ll~fL~~ 658 (936)
....++..++..+...+ .+...+..+-.+|...++.++-+..++.
T Consensus 200 ~~~~a~~~l~~al~~~P-~~~~~~~~la~~l~~~g~~~~A~~~l~~ 244 (287)
T 3qou_A 200 ADTPEIQQLQQQVAENP-EDAALATQLALQLHQVGRNEEALELLFG 244 (287)
T ss_dssp TSCHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred ccCccHHHHHHHHhcCC-ccHHHHHHHHHHHHHcccHHHHHHHHHH
Confidence 01225556666665554 3456666666677665544444444433
No 459
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=47.18 E-value=2.3e+02 Score=28.24 Aligned_cols=113 Identities=13% Similarity=0.053 Sum_probs=63.4
Q ss_pred ceeEEEEe--CCEEEEEe-cCCeEEEEeCCCCCceeeEcCCCCCCccceeEEEeCCCCCeEEEEeecCCCccEEEEecCC
Q 002318 23 VITCMSAG--NDVIVLGT-SKGWLIRHDFGAGDSYDIDLSAGRPGEQSIHKVFVDPGGSHCIATIVGSGGAETFYTHAKW 99 (936)
Q Consensus 23 ~i~~l~v~--~n~l~l~~-~~g~l~ridl~~~~~~~~~l~~~~~~~~~i~~i~lDp~G~hlli~~~~~~~g~~~Y~~~~~ 99 (936)
...++++. ++.||++- .++.|+++|++...+..+ ++. +....+.|.+||.|.++.++-. +++..+.+....
T Consensus 37 ~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~-~~~---~~~~p~~ia~d~~~~~lyv~d~--~~~~I~~~~~~g 110 (267)
T 1npe_A 37 VIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTI-IRQ---DLGSPEGIALDHLGRTIFWTDS--QLDRIEVAKMDG 110 (267)
T ss_dssp EEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEE-ECT---TCCCEEEEEEETTTTEEEEEET--TTTEEEEEETTS
T ss_pred cEEEEEEecCCCEEEEEECCCCEEEEEecCCCCcEEE-EEC---CCCCccEEEEEecCCeEEEEEC--CCCEEEEEEcCC
Confidence 45788886 46777665 568999999944433322 221 1246789999998888888754 134555554433
Q ss_pred CCceeccCCCCceEEEEEecCCCCCCCCcceEEEEcC---CCcEEEEEEec
Q 002318 100 SKPRVLSKLKGLVVNAVAWNRQQITEASTKEIILGTD---TGQLHEMAVDE 147 (936)
Q Consensus 100 ~k~k~L~klkg~~I~sVaw~~~~~~~~st~~iLiGt~---~G~i~e~~i~~ 147 (936)
...+.+.......-..+++++. .+.+.+... .+.|+...+++
T Consensus 111 ~~~~~~~~~~~~~P~~i~vd~~------~g~lyv~~~~~~~~~I~~~~~dg 155 (267)
T 1npe_A 111 TQRRVLFDTGLVNPRGIVTDPV------RGNLYWTDWNRDNPKIETSHMDG 155 (267)
T ss_dssp CSCEEEECSSCSSEEEEEEETT------TTEEEEEECCSSSCEEEEEETTS
T ss_pred CCEEEEEECCCCCccEEEEeeC------CCEEEEEECCCCCcEEEEEecCC
Confidence 3223332211134567777732 234544432 35666655543
No 460
>3of7_A Regulator of chromosome condensation; beta-propeller, guanine nucleotide exchange factor (GEF), GS histones, nucleus, cell cycle; 1.90A {Saccharomyces cerevisiae}
Probab=47.12 E-value=3.4e+02 Score=30.18 Aligned_cols=110 Identities=17% Similarity=0.220 Sum_probs=71.2
Q ss_pred ceeEEEEeCCEEEEEecCCeEEEEeC-CCCC-----ceee----EcCCCCCCccceeEEEeCCCCCeEEEEeecCCCccE
Q 002318 23 VITCMSAGNDVIVLGTSKGWLIRHDF-GAGD-----SYDI----DLSAGRPGEQSIHKVFVDPGGSHCIATIVGSGGAET 92 (936)
Q Consensus 23 ~i~~l~v~~n~l~l~~~~g~l~ridl-~~~~-----~~~~----~l~~~~~~~~~i~~i~lDp~G~hlli~~~~~~~g~~ 92 (936)
.|..+++..+..++.+.+|.||-|=. ...+ .... ..|... ....|.+|.. .+.|.++-+. +|.+
T Consensus 205 ~i~~va~G~~hs~alt~~G~v~~wG~n~~GqLG~~~~~~~~~~~~~p~~~-~~~~v~~Ia~--G~~hs~alt~---~G~v 278 (473)
T 3of7_A 205 NIVQLAPGKDHILFLDEEGMVFAWGNGQQNQLGRKVMERFRLKTLDPRPF-GLRHVKYIAS--GENHCFALTK---DNKL 278 (473)
T ss_dssp CEEEEEECSSEEEEEETTSCEEEEECCTTSTTSSCCCGGGTTTTCSCEEC-SCCSEEEEEE--CSSEEEEEET---TSCE
T ss_pred CEEEEEecCCeEEEEeCCCeEEEEeCCCCCCCCCCccccccccccCceec-CCcceEEEec--CCCeEEEEec---CCCE
Confidence 59999999999999999999999944 1111 1110 111111 1246777665 5778888888 8999
Q ss_pred EEEecCC----------------CCceeccCCCCceEEEEEecCCCCCCCCcceEEEEcCCCcEEEEEEe
Q 002318 93 FYTHAKW----------------SKPRVLSKLKGLVVNAVAWNRQQITEASTKEIILGTDTGQLHEMAVD 146 (936)
Q Consensus 93 ~Y~~~~~----------------~k~k~L~klkg~~I~sVaw~~~~~~~~st~~iLiGt~~G~i~e~~i~ 146 (936)
|-+..+. ..++.+.-+.+..|..|+=... ..+++ |++|.||-.--.
T Consensus 279 ~~wG~n~~GqlG~~~~~~~~~~~~~P~~v~~~~~~~i~~ia~G~~-------hs~~l-t~~G~v~~wG~n 340 (473)
T 3of7_A 279 VSWGLNQFGQCGVSEDVEDGALVTKPKRLALPDNVVIRSIAAGEH-------HSLIL-SQDGDLYSCGRL 340 (473)
T ss_dssp EEEEECTTSTTCCCSCCCTTCEEEEEEECCCCTTCCEEEEEECSS-------EEEEE-ETTSCEEEEEEC
T ss_pred EEeCCCCCCCcCCCCcccCCceeeccccccccCCccEEEEEeCCC-------eEEEE-eCCCeEEEEECC
Confidence 8876422 1345566566778888876521 13444 889999976553
No 461
>3al9_A Plexin-A2; beta-propeller, membrane protein, signaling protein; HET: NAG; 2.10A {Mus musculus} PDB: 3al8_B*
Probab=46.39 E-value=27 Score=40.33 Aligned_cols=60 Identities=13% Similarity=0.066 Sum_probs=44.2
Q ss_pred ceeEEEEeC----CEEEEEecCCeEEEEeC-CCC----CceeeEcCCCCCCcccee-EEEeCCCCCeEEEEee
Q 002318 23 VITCMSAGN----DVIVLGTSKGWLIRHDF-GAG----DSYDIDLSAGRPGEQSIH-KVFVDPGGSHCIATIV 85 (936)
Q Consensus 23 ~i~~l~v~~----n~l~l~~~~g~l~ridl-~~~----~~~~~~l~~~~~~~~~i~-~i~lDp~G~hlli~~~ 85 (936)
..|+++|.. .++++||.+|+|+++-+ ... ..+++++... ..+|. .+-+|+.+.+|+|.+.
T Consensus 401 ~lT~vav~~~~~~tV~flGT~~G~l~KV~l~~~~~~~~~~e~~~v~~~---~~pv~~~l~~~~~~~~Lyv~s~ 470 (539)
T 3al9_A 401 RLTSVASYVYNGYSVVFVGTKSGKLKKIRADGPPHGGVQYEMVSVFKD---GSPILRDMAFSINQLYLYVMSE 470 (539)
T ss_dssp CEEEEEEEEETTEEEEEEEETTSEEEEEEEEETTTEEEEEEEEECCTT---CCCCCSCCEECTTSSEEEEECS
T ss_pred ceEEEEeeccCCeEEEEEEcCCCeEEEEEeCCCCccceeEEEEEeecC---CCccccceEEccCCCeEEEEec
Confidence 578888874 38899999999999977 322 1345555421 25674 7889999999999987
No 462
>1a12_A RCC1, regulator of chromosome condensation 1; guanine nucleotide exchange factor, GEF, RAN, RAS-like nuclear GTP binding protein; 1.70A {Homo sapiens} SCOP: b.69.5.1 PDB: 1i2m_B
Probab=46.24 E-value=3.2e+02 Score=29.64 Aligned_cols=71 Identities=13% Similarity=0.083 Sum_probs=47.5
Q ss_pred CceeEEEEeCCEEEEEecCCeEEEEeC--C-------CCCceeeEcCCCCCCccceeEEEeCCCCCeEEEEeecCCCccE
Q 002318 22 GVITCMSAGNDVIVLGTSKGWLIRHDF--G-------AGDSYDIDLSAGRPGEQSIHKVFVDPGGSHCIATIVGSGGAET 92 (936)
Q Consensus 22 ~~i~~l~v~~n~l~l~~~~g~l~ridl--~-------~~~~~~~~l~~~~~~~~~i~~i~lDp~G~hlli~~~~~~~g~~ 92 (936)
..|..++...+..++.+.+|.||-|-. + ++.......|.......+|.+|.. ...|.++-+. +|++
T Consensus 111 ~~i~~va~G~~hs~alt~~G~v~~wG~~~n~~GqlG~~~~~~~~~~P~~v~~~~~i~~ia~--G~~hs~alt~---~G~v 185 (413)
T 1a12_A 111 EKVVQVSAGDSHTAALTDDGRVFLWGSFRDNNGVIGLLEPMKKSMVPVQVQLDVPVVKVAS--GNDHLVMLTA---DGDL 185 (413)
T ss_dssp SCEEEEEECSSEEEEEETTSCEEEEECEEETTEEEESSBBTBCEEEEEEECCSSCEEEEEE--CSSEEEEEET---TSCE
T ss_pred CcEEEEecCCCeEEEEcCCCcEEEeeCCcCCCCccCcCCccccccCCEEecCCCCEEEEEe--cCceEEEEcC---CCCE
Confidence 479999999999999999999999943 1 111111111211112356777766 4678888888 8999
Q ss_pred EEEec
Q 002318 93 FYTHA 97 (936)
Q Consensus 93 ~Y~~~ 97 (936)
|-+..
T Consensus 186 ~~wG~ 190 (413)
T 1a12_A 186 YTLGC 190 (413)
T ss_dssp EEEEC
T ss_pred EEeeC
Confidence 88764
No 463
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=45.97 E-value=15 Score=33.48 Aligned_cols=49 Identities=22% Similarity=0.285 Sum_probs=39.0
Q ss_pred HHHchhhHHHHHHhcCCh----hhHHHHHHHHHHHHHhcCCHHHHHHHHHHhc
Q 002318 370 VYLDMKEYAAALANCRDP----LQRDQVYLVQAEAAFATKDFHRAASFYAKIN 418 (936)
Q Consensus 370 ~ll~~~~f~~Al~~~~~~----~~~~~I~~~~~~~L~~~g~y~~Aa~~y~~~~ 418 (936)
.+...|+|++|++..+.. .....+....|.-++..|+|++|...|.+..
T Consensus 56 ~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~ 108 (166)
T 1a17_A 56 AYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFRAALRDYETVV 108 (166)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 477889999999987531 1234677888999999999999999998765
No 464
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=45.38 E-value=17 Score=30.93 Aligned_cols=49 Identities=16% Similarity=0.357 Sum_probs=37.7
Q ss_pred HHHchhhHHHHHHhcCCh----hhHHHHHHHHHHHHHhcCCHHHHHHHHHHhc
Q 002318 370 VYLDMKEYAAALANCRDP----LQRDQVYLVQAEAAFATKDFHRAASFYAKIN 418 (936)
Q Consensus 370 ~ll~~~~f~~Al~~~~~~----~~~~~I~~~~~~~L~~~g~y~~Aa~~y~~~~ 418 (936)
.+...|+|++|+.+.+.. .....+....|..++..|++++|...|.+..
T Consensus 52 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~ 104 (125)
T 1na0_A 52 AYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKAL 104 (125)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 467789999999886531 1223566788899999999999999988764
No 465
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=45.18 E-value=28 Score=32.52 Aligned_cols=48 Identities=15% Similarity=0.184 Sum_probs=30.4
Q ss_pred HHchhhHHHHHHhcCCh----hhHHHHHHHHHHHHHhcCCHHHHHHHHHHhc
Q 002318 371 YLDMKEYAAALANCRDP----LQRDQVYLVQAEAAFATKDFHRAASFYAKIN 418 (936)
Q Consensus 371 ll~~~~f~~Al~~~~~~----~~~~~I~~~~~~~L~~~g~y~~Aa~~y~~~~ 418 (936)
+++.|+|++|++..+.. ..-..+....|..++..|+|++|...|.+..
T Consensus 20 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al 71 (177)
T 2e2e_A 20 FASQQNPEAQLQALQDKIRANPQNSEQWALLGEYYLWQNDYSNSLLAYRQAL 71 (177)
T ss_dssp CC-----CCCCHHHHHHHHHCCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred hhhccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 44556666666554421 1223677888999999999999999998865
No 466
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=45.11 E-value=14 Score=35.69 Aligned_cols=49 Identities=14% Similarity=0.072 Sum_probs=39.3
Q ss_pred HHHchhhHHHHHHhcCCh----hhHHHHHHHHHHHHHhcCCHHHHHHHHHHhc
Q 002318 370 VYLDMKEYAAALANCRDP----LQRDQVYLVQAEAAFATKDFHRAASFYAKIN 418 (936)
Q Consensus 370 ~ll~~~~f~~Al~~~~~~----~~~~~I~~~~~~~L~~~g~y~~Aa~~y~~~~ 418 (936)
.++..|+|++|+..++.. ..-..+....|.-++..|+|++|...|.+..
T Consensus 97 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al 149 (198)
T 2fbn_A 97 CYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAA 149 (198)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 467889999999998642 1234677888999999999999999998765
No 467
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=44.99 E-value=2.6e+02 Score=28.35 Aligned_cols=111 Identities=7% Similarity=0.084 Sum_probs=59.6
Q ss_pred eeEEEEe--CCEEEEEec-CCeEEEEeCCCCCceeeEcCCCC-CCccceeEEEeCCCCCeEEEEeecCCCccEEEEecCC
Q 002318 24 ITCMSAG--NDVIVLGTS-KGWLIRHDFGAGDSYDIDLSAGR-PGEQSIHKVFVDPGGSHCIATIVGSGGAETFYTHAKW 99 (936)
Q Consensus 24 i~~l~v~--~n~l~l~~~-~g~l~ridl~~~~~~~~~l~~~~-~~~~~i~~i~lDp~G~hlli~~~~~~~g~~~Y~~~~~ 99 (936)
+.+.++. +++++.... +++|+.+|..+..+.++.+.... ........+..+|.|..+++.+. ++.++-++..-
T Consensus 79 ~~~~~~~~dG~~lv~~~~~~~~v~~vd~~Gk~l~~~~~~~~~~~~~~~~~~v~~~~~G~~lv~~~~---~~~v~~~d~~G 155 (276)
T 3no2_A 79 MQTARILPDGNALVAWCGHPSTILEVNMKGEVLSKTEFETGIERPHAQFRQINKNKKGNYLVPLFA---TSEVREIAPNG 155 (276)
T ss_dssp EEEEEECTTSCEEEEEESTTEEEEEECTTSCEEEEEEECCSCSSGGGSCSCCEECTTSCEEEEETT---TTEEEEECTTS
T ss_pred ccccEECCCCCEEEEecCCCCEEEEEeCCCCEEEEEeccCCCCcccccccCceECCCCCEEEEecC---CCEEEEECCCC
Confidence 4444433 445555555 78899888866666677664221 11124456677899987776665 67776666542
Q ss_pred CCceeccCCCCceEEEEEecCCCCCCCCcceEEEEc-CCCcEEEEEEe
Q 002318 100 SKPRVLSKLKGLVVNAVAWNRQQITEASTKEIILGT-DTGQLHEMAVD 146 (936)
Q Consensus 100 ~k~k~L~klkg~~I~sVaw~~~~~~~~st~~iLiGt-~~G~i~e~~i~ 146 (936)
....... ..+ ...+++.. ..+.+|+++ ..+.|++...+
T Consensus 156 ~~~w~~~-~~~-~~~~~~~~-------~~g~~~v~~~~~~~v~~~d~~ 194 (276)
T 3no2_A 156 QLLNSVK-LSG-TPFSSAFL-------DNGDCLVACGDAHCFVQLNLE 194 (276)
T ss_dssp CEEEEEE-CSS-CCCEEEEC-------TTSCEEEECBTTSEEEEECTT
T ss_pred CEEEEEE-CCC-CccceeEc-------CCCCEEEEeCCCCeEEEEeCc
Confidence 2111111 111 23334443 124566654 45667776543
No 468
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=44.94 E-value=6.5 Score=40.29 Aligned_cols=35 Identities=20% Similarity=0.601 Sum_probs=25.7
Q ss_pred cccccccchhhhhcccccccccccCCCCCCCCEEEEcCCChhHHHhHHHHHhh
Q 002318 833 DEDCGVCRRKILVAGRDYRMARGYASVGPMAPFYVFPCGHAFHAQCLIAHVTQ 885 (936)
Q Consensus 833 ~~~C~~C~k~L~~~~~~~~~~~~~~~~~~~~~fvvFpCgH~fH~~CL~~~~~~ 885 (936)
-..|.+|...+.. |. + ++ .|+|.||..|+.+....
T Consensus 180 i~~C~iC~~iv~~-g~--~-----------C~----~C~~~~H~~C~~~~~~~ 214 (238)
T 3nw0_A 180 VKICNICHSLLIQ-GQ--S-----------CE----TCGIRMHLPCVAKYFQS 214 (238)
T ss_dssp CCBCTTTCSBCSS-CE--E-----------CS----SSCCEECHHHHHHHTTT
T ss_pred CCcCcchhhHHhC-Cc--c-----------cC----ccChHHHHHHHHHHHHh
Confidence 5679999988775 21 1 11 39999999999987643
No 469
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=44.10 E-value=4.7e+02 Score=31.42 Aligned_cols=61 Identities=18% Similarity=0.101 Sum_probs=35.7
Q ss_pred CceeEEEEe--CCEEEEE-ecCCeEEEEeCCCCC---ceeeEcCCCCCCccceeEEEeCCCCCeEEEEee
Q 002318 22 GVITCMSAG--NDVIVLG-TSKGWLIRHDFGAGD---SYDIDLSAGRPGEQSIHKVFVDPGGSHCIATIV 85 (936)
Q Consensus 22 ~~i~~l~v~--~n~l~l~-~~~g~l~ridl~~~~---~~~~~l~~~~~~~~~i~~i~lDp~G~hlli~~~ 85 (936)
..+..|++. ++.||++ ..+++|+|++++... .....+.. +......|-+|+.|.+|.++-.
T Consensus 424 ~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~---~l~~P~GLAvD~~~~~LY~tD~ 490 (791)
T 3m0c_C 424 RNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISR---DIQAPDGLAVDWIHSNIYWTDS 490 (791)
T ss_dssp SSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECS---SCSCCCEEEEETTTTEEEEEET
T ss_pred CceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEEEec---CCCCcceeeeeecCCcEEEEec
Confidence 346777776 4566555 456889999993321 11122221 1245678899998888887754
No 470
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=44.08 E-value=17 Score=40.78 Aligned_cols=49 Identities=16% Similarity=0.177 Sum_probs=34.1
Q ss_pred HHHchhhHHHHHHhcCC------------hhhHHHHHHHHHHHHHhcCCHHHHHHHHHHhc
Q 002318 370 VYLDMKEYAAALANCRD------------PLQRDQVYLVQAEAAFATKDFHRAASFYAKIN 418 (936)
Q Consensus 370 ~ll~~~~f~~Al~~~~~------------~~~~~~I~~~~~~~L~~~g~y~~Aa~~y~~~~ 418 (936)
+|..+|+|++|+.+++. .......+..-|.-+..+|+|++|..+|.+..
T Consensus 349 ~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~qg~~~eA~~~~~~Al 409 (433)
T 3qww_A 349 VCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGRLYMGLENKAAGEKALKKAI 409 (433)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhccCHHHHHHHHHHHH
Confidence 45667888888877652 12344556677777788888888888887775
No 471
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=43.64 E-value=36 Score=36.26 Aligned_cols=79 Identities=18% Similarity=0.174 Sum_probs=50.6
Q ss_pred HHHchhhHHHHHHhcCC-----hhh--------------HHHHHHHHHHHHHhcCCHHHHHHHHHHhcCC--C---ChHH
Q 002318 370 VYLDMKEYAAALANCRD-----PLQ--------------RDQVYLVQAEAAFATKDFHRAASFYAKINYI--L---SFEE 425 (936)
Q Consensus 370 ~ll~~~~f~~Al~~~~~-----~~~--------------~~~I~~~~~~~L~~~g~y~~Aa~~y~~~~~~--~---~~E~ 425 (936)
.++..|+|++|++..+. |.. +..+....|.-++..|+|++|...|.+.... . .+-.
T Consensus 156 ~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~ 235 (336)
T 1p5q_A 156 VYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSR 235 (336)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHH
Confidence 47788999999887542 221 2478889999999999999999999987511 1 1112
Q ss_pred HHHHhcCcChHHHHHHHHHHHhh
Q 002318 426 ITLKFISVSEQDALRTFLLRKLD 448 (936)
Q Consensus 426 v~lkFl~~~~~~~L~~YL~~~l~ 448 (936)
...-+...++.+.-..++..-+.
T Consensus 236 lg~~~~~~g~~~~A~~~~~~al~ 258 (336)
T 1p5q_A 236 RGEAHLAVNDFELARADFQKVLQ 258 (336)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHH
Confidence 22333445555544455554444
No 472
>3nvq_A Semaphorin-7A; beta-propeller, signaling, signaling protein-protein binding; HET: NAG NDG; 2.40A {Homo sapiens}
Probab=43.24 E-value=47 Score=38.61 Aligned_cols=61 Identities=11% Similarity=0.053 Sum_probs=43.0
Q ss_pred CceeEEEEe-----C----CEEEEEecCCeEEEEeCCCCC-------ceeeEcCCCCCCccceeEEEeCCCCCeEEEEee
Q 002318 22 GVITCMSAG-----N----DVIVLGTSKGWLIRHDFGAGD-------SYDIDLSAGRPGEQSIHKVFVDPGGSHCIATIV 85 (936)
Q Consensus 22 ~~i~~l~v~-----~----n~l~l~~~~g~l~ridl~~~~-------~~~~~l~~~~~~~~~i~~i~lDp~G~hlli~~~ 85 (936)
...|+++|. + .++++||.+|+|+++=+.++. +.++++.. ...+|..+-+|+.+.+|+|.+.
T Consensus 362 ~~~T~IaVd~v~a~~g~~ytVlFLGT~~G~l~Kvv~~~~~~~~~~~~ieei~~~~---~~~pi~~L~ls~~~~~LyV~s~ 438 (590)
T 3nvq_A 362 YHYQKVAVHRMQASHGETFHVLYLTTDRGTIHKVVEPGEQEHSFAFNIMEIQPFR---RAAAIQTMSLDAERRKLYVSSQ 438 (590)
T ss_dssp SCEEEEEEEEEECTTSCEEEEEEEEETTSCEEEEECCCSSTTCCCEEEEEECCCS---SCCCCCEEEEETTTTEEEEECS
T ss_pred CcEEEEEEEEEeccCCCceEEEEEEcCCcEEEEEEecCCCCcceeEEEEEeeccC---CCCceeeEEEcCCCCEEEEEec
Confidence 456777754 2 488999999999998662221 13343321 1357899999999999999886
No 473
>1wp5_A Topoisomerase IV; broken beta-propeller, hairpin-invaded beta-propeller, six- bladed beta-propeller; 1.79A {Geobacillus stearothermophilus} SCOP: b.68.10.1
Probab=43.15 E-value=3.2e+02 Score=28.82 Aligned_cols=162 Identities=13% Similarity=0.180 Sum_probs=88.0
Q ss_pred CceeE-EEEe----CCEEEEEecCCeEEEEeC---CCCC-ceeeE-cCCCCCCccceeEEEeCCCCCeEEEEeecCCCcc
Q 002318 22 GVITC-MSAG----NDVIVLGTSKGWLIRHDF---GAGD-SYDID-LSAGRPGEQSIHKVFVDPGGSHCIATIVGSGGAE 91 (936)
Q Consensus 22 ~~i~~-l~v~----~n~l~l~~~~g~l~ridl---~~~~-~~~~~-l~~~~~~~~~i~~i~lDp~G~hlli~~~~~~~g~ 91 (936)
+.|.+ +.+. +..+++++.+|.+-|..+ .... -.-+. +..+ . ++.+..+.+-....++++.|+ +|.
T Consensus 92 e~Iv~~~~~~~~~~~~~ll~~T~~G~iKrt~l~e~~~~~r~~G~~ai~l~-e-~d~lv~~~~~~~~~~i~l~T~---~G~ 166 (323)
T 1wp5_A 92 EEIIKAIPINDFELNGYFLFVTRNGMVKKTELKHYKAQRYSKPLTGINLK-N-DDQVVDVHLTDGMNELFLVTH---NGY 166 (323)
T ss_dssp CCEEEEEEESCTTSSCEEEEEETTSEEEEEEGGGGCCSCCSSCEECSCCC-T-TCCEEEEEEECSCSEEEEEET---TSE
T ss_pred CEEEEEEEecccCCCceEEEEeCCCeEEEeEHHHhhhccccCceEEEEeC-C-CCEEEEEEEeCCCCEEEEEeC---CCc
Confidence 34555 4554 347999999999999977 1111 11111 1111 2 255656555445677888887 788
Q ss_pred EEEEecCC-------CCceeccCCC-CceEEEEEecCCCCCCCCcceEEEEcCCCcEEEEEEecC---CcccceeeEEee
Q 002318 92 TFYTHAKW-------SKPRVLSKLK-GLVVNAVAWNRQQITEASTKEIILGTDTGQLHEMAVDEK---DKREKYIKLLFE 160 (936)
Q Consensus 92 ~~Y~~~~~-------~k~k~L~klk-g~~I~sVaw~~~~~~~~st~~iLiGt~~G~i~e~~i~~~---~~~~~~~k~v~~ 160 (936)
.+-+.... .+.-.+.+|+ |-.|.+++.-++ ....+|+.|.+|....+.++.- .+.-+.++.+-.
T Consensus 167 ~irf~~~ev~~~gR~a~GV~~i~L~~~d~Vv~~~~~~~-----~~~~ll~vt~~G~gKr~~~~e~~~~~Rg~kGv~~~~~ 241 (323)
T 1wp5_A 167 ALWFDESEVSIVGVRAAGVKGMNLKEGDYIVSGQLITS-----KDESIVVATQRGAVKKMKLTEFEKATRAKRGVVILRE 241 (323)
T ss_dssp EEEEEGGGSCBCCSSCCCEECCCCCTTCCEEEEEEECC-----TTCEEEEEETTSEEEEEEGGGSCCCCTTSCCEECSCC
T ss_pred EEEEEHHHCcccCCCCcCEEEEEeCCCCEEEEEEEEcC-----CCcEEEEEECCCceEEEEHHHccccCCCCCCEECeee
Confidence 87665421 2222333443 445666655422 1126999999998777766431 111222333212
Q ss_pred eCCCCCceeeEEEEeeccCCCceEEEEEECCCeEEEEe
Q 002318 161 LNELPEAFMGLQMETASLSNGTRYYVMAVTPTRLYSFT 198 (936)
Q Consensus 161 l~~~~~~I~gi~~~~~~~~~~~~~~i~ast~~rly~f~ 198 (936)
++..++.+.++.... + ...++++|+..++..+.
T Consensus 242 ~~~~~~~l~~~~~v~----~-~~~i~~it~~g~~ir~~ 274 (323)
T 1wp5_A 242 LKANPHRISGFVVAQ----D-SDTIYLQTEKSFIETIK 274 (323)
T ss_dssp CSSSCCCEEEEEEEC----T-TCEEEEEETTSCEEEEE
T ss_pred cCCCCceEEEEEEeC----C-CCeEEEEeCCCeEEEEE
Confidence 332233566554431 2 23466668888888663
No 474
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}
Probab=43.07 E-value=3.1e+02 Score=28.59 Aligned_cols=95 Identities=13% Similarity=0.077 Sum_probs=55.7
Q ss_pred CCeEEEEeCCCCCceeeEcCCCCCCccceeEEEeCC-CCCeEEEEeecCCC----ccEEEEecCCCCceeccCCC-CceE
Q 002318 40 KGWLIRHDFGAGDSYDIDLSAGRPGEQSIHKVFVDP-GGSHCIATIVGSGG----AETFYTHAKWSKPRVLSKLK-GLVV 113 (936)
Q Consensus 40 ~g~l~ridl~~~~~~~~~l~~~~~~~~~i~~i~lDp-~G~hlli~~~~~~~----g~~~Y~~~~~~k~k~L~klk-g~~I 113 (936)
.+.|+++|+...+...+. + ....+..+...| .|.+++.+++ .+. ...+.+.....+.+.+..-. +..+
T Consensus 167 ~~~l~~~d~~~g~~~~~~-~----~~~~~~~~~~sp~dg~~l~~~~~-~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~ 240 (396)
T 3c5m_A 167 TCRLIKVDIETGELEVIH-Q----DTAWLGHPIYRPFDDSTVGFCHE-GPHDLVDARMWLVNEDGSNVRKIKEHAEGESC 240 (396)
T ss_dssp CEEEEEEETTTCCEEEEE-E----ESSCEEEEEEETTEEEEEEEEEC-SCSSSCSCCCEEEETTSCCCEESSCCCTTEEE
T ss_pred cceEEEEECCCCcEEeec-c----CCcccccceECCCCCCEEEEEec-CCCCCCCceEEEEECCCCceeEeeccCCCccc
Confidence 457899999333333332 1 124677888889 7888877765 111 34555665555566665421 4578
Q ss_pred EEEEecCCCCCCCCcceEEEEcCC-----CcEEEEEEe
Q 002318 114 NAVAWNRQQITEASTKEIILGTDT-----GQLHEMAVD 146 (936)
Q Consensus 114 ~sVaw~~~~~~~~st~~iLiGt~~-----G~i~e~~i~ 146 (936)
.+++|.++ .+.++.++.+ +.|+...+.
T Consensus 241 ~~~~~spd------g~~l~~~~~~~~~~~~~l~~~d~~ 272 (396)
T 3c5m_A 241 THEFWIPD------GSAMAYVSYFKGQTDRVIYKANPE 272 (396)
T ss_dssp EEEEECTT------SSCEEEEEEETTTCCEEEEEECTT
T ss_pred cceEECCC------CCEEEEEecCCCCccceEEEEECC
Confidence 99999843 2256666443 336665543
No 475
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=42.90 E-value=15 Score=35.90 Aligned_cols=50 Identities=20% Similarity=0.186 Sum_probs=40.0
Q ss_pred HHHHchhhHHHHHHhcCChh----hHHHHHHHHHHHHHhcCCHHHHHHHHHHhc
Q 002318 369 KVYLDMKEYAAALANCRDPL----QRDQVYLVQAEAAFATKDFHRAASFYAKIN 418 (936)
Q Consensus 369 ~~ll~~~~f~~Al~~~~~~~----~~~~I~~~~~~~L~~~g~y~~Aa~~y~~~~ 418 (936)
..|...|+|++|+...+... .-..+....|.-++..|+|++|...|.+..
T Consensus 62 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al 115 (208)
T 3urz_A 62 LAYKKNRNYDKAYLFYKELLQKAPNNVDCLEACAEMQVCRGQEKDALRMYEKIL 115 (208)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 34788999999999876321 224677788999999999999999998875
No 476
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1
Probab=42.77 E-value=3.1e+02 Score=28.45 Aligned_cols=153 Identities=10% Similarity=-0.026 Sum_probs=83.7
Q ss_pred ceeEEEEe--CCEEEEE-ecCCeEEEEeCCCCCceeeEcCCCCCCccceeEEEeCCCCCeEEEEeecCCCccEEEEecCC
Q 002318 23 VITCMSAG--NDVIVLG-TSKGWLIRHDFGAGDSYDIDLSAGRPGEQSIHKVFVDPGGSHCIATIVGSGGAETFYTHAKW 99 (936)
Q Consensus 23 ~i~~l~v~--~n~l~l~-~~~g~l~ridl~~~~~~~~~l~~~~~~~~~i~~i~lDp~G~hlli~~~~~~~g~~~Y~~~~~ 99 (936)
....+||. ++.||++ ..++.|.++|+++.....+ +.. .......|-+||.+.+++++-. +..+..+-+...-
T Consensus 78 ~p~glavd~~~~~ly~~d~~~~~I~~~~~~g~~~~~~-~~~---~~~~P~~iavdp~~g~ly~~d~-~~~~~I~~~~~dG 152 (316)
T 1ijq_A 78 APDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTL-FRE---NGSKPRAIVVDPVHGFMYWTDW-GTPAKIKKGGLNG 152 (316)
T ss_dssp CCCEEEEETTTTEEEEEETTTTEEEEEETTSSSEEEE-EEC---TTCCEEEEEEETTTTEEEEEEC-SSSCEEEEEETTS
T ss_pred CcCEEEEeecCCeEEEEECCCCEEEEEeCCCCceEEE-EEC---CCCCcceEEeCCCCCEEEEEcc-CCCCeEEEEcCCC
Confidence 34678885 5677766 5678999999954433322 211 1245689999998888888754 1014454444333
Q ss_pred CCceeccCCCCceEEEEEecCCCCCCCCcceEEEEc-CCCcEEEEEEecCCcccceeeEEeeeCCCCCceeeEEEEeecc
Q 002318 100 SKPRVLSKLKGLVVNAVAWNRQQITEASTKEIILGT-DTGQLHEMAVDEKDKREKYIKLLFELNELPEAFMGLQMETASL 178 (936)
Q Consensus 100 ~k~k~L~klkg~~I~sVaw~~~~~~~~st~~iLiGt-~~G~i~e~~i~~~~~~~~~~k~v~~l~~~~~~I~gi~~~~~~~ 178 (936)
...+.+..-....-..+||++. .+.+.+.. ..+.|+.+.+++. ..+.+...+....-..||.+.
T Consensus 153 ~~~~~~~~~~~~~P~gla~d~~------~~~lY~~D~~~~~I~~~d~dg~-----~~~~~~~~~~~~~~P~giav~---- 217 (316)
T 1ijq_A 153 VDIYSLVTENIQWPNGITLDLL------SGRLYWVDSKLHSISSIDVNGG-----NRKTILEDEKRLAHPFSLAVF---- 217 (316)
T ss_dssp CCEEEEECSSCSCEEEEEEETT------TTEEEEEETTTTEEEEEETTSC-----SCEEEEECTTTTSSEEEEEEE----
T ss_pred CCeEEEEECCCCCceEEEEecc------CCEEEEEECCCCeEEEEecCCC-----ceEEEeecCCccCCcEEEEEE----
Confidence 3333332212235678888832 23565554 4467777766543 123333332211224677774
Q ss_pred CCCceEEEEEEC-CCeEEEEe
Q 002318 179 SNGTRYYVMAVT-PTRLYSFT 198 (936)
Q Consensus 179 ~~~~~~~i~ast-~~rly~f~ 198 (936)
+ +.+.|+.. ..+++.+.
T Consensus 218 -~--~~ly~~d~~~~~V~~~~ 235 (316)
T 1ijq_A 218 -E--DKVFWTDIINEAIFSAN 235 (316)
T ss_dssp -T--TEEEEEETTTTEEEEEE
T ss_pred -C--CEEEEEECCCCeEEEEe
Confidence 1 34555443 55677554
No 477
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=42.46 E-value=94 Score=33.83 Aligned_cols=62 Identities=18% Similarity=0.229 Sum_probs=41.9
Q ss_pred EEEcccchhhHH----HHHHchhhHHHHHHhcCChh----hHHHHHHHHHHHHHhcCC-HHHHHHHHHHhc
Q 002318 357 QVSVNDEGRDMW----KVYLDMKEYAAALANCRDPL----QRDQVYLVQAEAAFATKD-FHRAASFYAKIN 418 (936)
Q Consensus 357 ~~~~~~e~~~~W----~~ll~~~~f~~Al~~~~~~~----~~~~I~~~~~~~L~~~g~-y~~Aa~~y~~~~ 418 (936)
.+.........| .++...|+|++|++..+... .-..+....|.-+...|+ |++|...|.+..
T Consensus 89 ai~~~p~~~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al 159 (382)
T 2h6f_A 89 QIIYSDKFRDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAII 159 (382)
T ss_dssp EECCCHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred hhhCChhhHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcccCHHHHHHHHHHHH
Confidence 333333444444 23566788999998865321 224567777888889996 999999998875
No 478
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=42.11 E-value=2.9e+02 Score=31.10 Aligned_cols=139 Identities=12% Similarity=0.124 Sum_probs=72.2
Q ss_pred HHHHHcCChhHHHHHHHhhh---------hHHHHHHHHHhcc---------cHHHHHHHHhCCC----CchhhHHh-hHH
Q 002318 516 KLLESYGRVEELVFFASLKE---------QHEIVVHHYIQQG---------EAKKALQMLRKPA----VPIDLQYK-FAP 572 (936)
Q Consensus 516 ~ll~~~g~~e~~l~~a~~~~---------dy~~ll~~yi~~~---------~~~~AL~~L~~~~----d~~~li~k-~~~ 572 (936)
+.+...|+.++++.+.+.+. -|..++..+...+ ..++|++++..+. .+....|. ...
T Consensus 34 d~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~tyn~lI~ 113 (501)
T 4g26_A 34 DMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNEATFTNGAR 113 (501)
T ss_dssp HHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCHHHHHHHHH
T ss_pred HHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCHHHHHHHHH
Confidence 34445677777766655442 2556666655432 3567777665421 01011111 011
Q ss_pred HHH-hHChHHHHHHHHcc--CCCCCCcc-h-hHhhhcCCCCCCCCChHHHHHHHHHHHhhcCCCCHhHHHHHHHHhhcCC
Q 002318 573 DLI-MLDAYETVESWMTT--NNLNPRKL-I-PAMMRYSSEPHAKNETHEVIKYLEFCVHRLHNEDPGVHNLLLSLYAKQE 647 (936)
Q Consensus 573 ~Ll-~~~p~~ti~ll~~~--~~ld~~~l-i-~~L~~~~~~~~~~~~~~~~~~YLe~li~~~~~~~~~~hn~ll~Ly~~~~ 647 (936)
.+. ...++++.+++-+. ..+.|... . ..+..|... ...+.+...++.+....-..+...++.+|..|++.+
T Consensus 114 ~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~----g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~~~g 189 (501)
T 4g26_A 114 LAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRK----GDADKAYEVDAHMVESEVVPEEPELAALLKVSMDTK 189 (501)
T ss_dssp HHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTT
T ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHC----CCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhCC
Confidence 111 24556666666332 34444431 1 111222111 134667888887776655567788899999998876
Q ss_pred ChHHHHHHHHH
Q 002318 648 DDSALLRFLQC 658 (936)
Q Consensus 648 ~~~~Ll~fL~~ 658 (936)
+-++...+|+.
T Consensus 190 ~~d~A~~ll~~ 200 (501)
T 4g26_A 190 NADKVYKTLQR 200 (501)
T ss_dssp CHHHHHHHHHH
T ss_pred CHHHHHHHHHH
Confidence 55555555544
No 479
>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A
Probab=41.45 E-value=3.6e+02 Score=28.95 Aligned_cols=51 Identities=8% Similarity=0.005 Sum_probs=33.7
Q ss_pred CEEEEEecCCeEEEEeC-CCCCceeeEcCCCCCCccceeEEEeCCCCCeEEEEe
Q 002318 32 DVIVLGTSKGWLIRHDF-GAGDSYDIDLSAGRPGEQSIHKVFVDPGGSHCIATI 84 (936)
Q Consensus 32 n~l~l~~~~g~l~ridl-~~~~~~~~~l~~~~~~~~~i~~i~lDp~G~hlli~~ 84 (936)
..++=|..+|+|-.||+ .+..+..+.-+... ...+..+-+.|.|..+++.+
T Consensus 194 ~~LaSgS~D~TIkIWDl~TGk~l~tL~g~~~~--v~~v~~vafSpdG~~lvs~s 245 (356)
T 2w18_A 194 EALLGTTIMNNIVIWNLKTGQLLKKMHIDDSY--QASVCHKAYSEMGLLFIVLS 245 (356)
T ss_dssp TEEEEEETTSEEEEEETTTCCEEEEEECCC-----CCCEEEEEEETTEEEEEEC
T ss_pred ceEEEecCCCcEEEEECCCCcEEEEEcCCCcc--eeeeEEEEECCCCCEEEEec
Confidence 67888889999999999 66656655433111 13455555678888766654
No 480
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=40.92 E-value=29 Score=29.82 Aligned_cols=49 Identities=14% Similarity=0.114 Sum_probs=37.5
Q ss_pred HHHchhhHHHHHHhcCC-----------hhhHHHHHHHHHHHHHhcCCHHHHHHHHHHhc
Q 002318 370 VYLDMKEYAAALANCRD-----------PLQRDQVYLVQAEAAFATKDFHRAASFYAKIN 418 (936)
Q Consensus 370 ~ll~~~~f~~Al~~~~~-----------~~~~~~I~~~~~~~L~~~g~y~~Aa~~y~~~~ 418 (936)
.++++|+|+.|..-.+. ...+..|+...|.-++..|+++.|...+.+..
T Consensus 14 ~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al 73 (104)
T 2v5f_A 14 VAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLL 73 (104)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 36777777777665331 12577899999999999999999999887764
No 481
>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A
Probab=40.76 E-value=6.7 Score=30.83 Aligned_cols=34 Identities=15% Similarity=0.137 Sum_probs=27.4
Q ss_pred ccccccchhhhhcccccccccccCCCCCCCCEEEE-cCCChhHHHhHHHHHhhc
Q 002318 834 EDCGVCRRKILVAGRDYRMARGYASVGPMAPFYVF-PCGHAFHAQCLIAHVTQC 886 (936)
Q Consensus 834 ~~C~~C~k~L~~~~~~~~~~~~~~~~~~~~~fvvF-pCgH~fH~~CL~~~~~~~ 886 (936)
-.|.+|++.+.. | |+- +|||.|=+.|+.+.+...
T Consensus 4 ~~CpIs~~~m~d------------------P-V~~~~sG~~yer~~I~~~l~~~ 38 (61)
T 2bay_A 4 MLCAISGKVPRR------------------P-VLSPKSRTIFEKSLLEQYVKDT 38 (61)
T ss_dssp CCCTTTCSCCSS------------------E-EEETTTTEEEEHHHHHHHHHHH
T ss_pred EEecCCCCCCCC------------------C-EEeCCCCcEEcHHHHHHHHHhC
Confidence 468888887766 5 555 899999999999998654
No 482
>3ol2_B Plexin-B1; beta-propeller, signalling, extacellular, signaling protein; HET: NAG BMA; 2.99A {Homo sapiens}
Probab=40.47 E-value=52 Score=37.71 Aligned_cols=59 Identities=17% Similarity=0.208 Sum_probs=43.9
Q ss_pred ceeEEEEe----CCEEEEEecCCeEEEEeCCC----CCceeeEcCCCCCCccce-eEEEeCCCCCeEEEEee
Q 002318 23 VITCMSAG----NDVIVLGTSKGWLIRHDFGA----GDSYDIDLSAGRPGEQSI-HKVFVDPGGSHCIATIV 85 (936)
Q Consensus 23 ~i~~l~v~----~n~l~l~~~~g~l~ridl~~----~~~~~~~l~~~~~~~~~i-~~i~lDp~G~hlli~~~ 85 (936)
..|+++|. -.++++||.+|+|+++=+.+ ...+++.++. ..+| ..+.+|+.+.+|+|.+.
T Consensus 388 ~lT~IaVd~~~g~tV~FlGT~~G~l~Kv~~~~~~~~~~~ee~~v~~----~~pi~~~l~l~~~~~~Lyv~s~ 455 (528)
T 3ol2_B 388 QLTAVAVTMEDGHTIAFLGDSQGQLHRVYLGPGSDGHPYSTQSIQQ----GSAVSRDLTFDGTFEHLYVMTQ 455 (528)
T ss_dssp CEEEEEEEEETTEEEEEEEETTSEEEEEECSSSCCSCCSEEEESST----TSCCCSCCEECTTSSEEEEECS
T ss_pred ceEEEEEEeecCeEEEEEECCCCeEEEEEEcCCCCeeEEeeeccCC----CCcceeeEEEecCCCEEEEEeC
Confidence 47888875 24889999999999987622 2345677642 2467 48999999999999887
No 483
>1zvu_A Topoisomerase IV subunit A; beta-pinwheel, ATPase, supercoiling, decatenation, DNA bindi topology; 3.00A {Escherichia coli}
Probab=40.41 E-value=2.8e+02 Score=32.70 Aligned_cols=153 Identities=12% Similarity=0.148 Sum_probs=85.6
Q ss_pred EeCCEEEEEecCCeEEEEeCCCCCceeeEcCCCCCCccceeEEEeCCCCCeEEEEeecCCCccEEEEecCC-----CCce
Q 002318 29 AGNDVIVLGTSKGWLIRHDFGAGDSYDIDLSAGRPGEQSIHKVFVDPGGSHCIATIVGSGGAETFYTHAKW-----SKPR 103 (936)
Q Consensus 29 v~~n~l~l~~~~g~l~ridl~~~~~~~~~l~~~~~~~~~i~~i~lDp~G~hlli~~~~~~~g~~~Y~~~~~-----~k~k 103 (936)
...++.+..++.|.|-|..-.+-........ .++.+..+|.-.+-.++++-|+ .|.+|.+.... .+-+
T Consensus 470 ~~e~v~v~ls~~GyiKr~~g~~~~~~~~~~k----~~D~~~~~~~~~t~d~ll~ft~---~Gr~y~~~~~~lP~~~~~G~ 542 (716)
T 1zvu_A 470 PSEPVTIVLSQMGWVRSAKGHDIDAPGLNYK----AGDSFKAAVKGKSNQPVVFVDS---TGRSYAIDPITLPSARGQGE 542 (716)
T ss_dssp CCCCCCEEEETTTEEEECCC-------------------CCEEECCCSSSCEEEEET---TSEEEEECTTTSCCCC---C
T ss_pred CCceEEEEEecCCeEeccCCCCcCccccccC----CCCeEEEEEEecCCCEEEEEec---CCcEEEEEeeecccccccCe
Confidence 3566778888999998842211111111111 2356778888777778888888 79998875311 2233
Q ss_pred eccCC----CCceEEEEEecCCCCCCCCcceEEEEcCCCcEEEEEEecCCcccceeeEEeeeCCCCCceeeEEEEeeccC
Q 002318 104 VLSKL----KGLVVNAVAWNRQQITEASTKEIILGTDTGQLHEMAVDEKDKREKYIKLLFELNELPEAFMGLQMETASLS 179 (936)
Q Consensus 104 ~L~kl----kg~~I~sVaw~~~~~~~~st~~iLiGt~~G~i~e~~i~~~~~~~~~~k~v~~l~~~~~~I~gi~~~~~~~~ 179 (936)
++..+ .|-.|.++--.+ ....++++|++|.+.-+.+..-...-+.=+...+|.+. ..+.++....
T Consensus 543 ~i~~ll~l~~~e~i~~~~~~~------~~~~l~~~T~~G~vk~~~l~~~~~~~~~g~~ai~L~~~-d~lv~~~~~~---- 611 (716)
T 1zvu_A 543 PLTGKLTLPPGATVDHMLMES------DDQKLLMASDAGYGFVCTFNDLVARNRAGKALITLPEN-AHVMPPVVIE---- 611 (716)
T ss_dssp BSTTTSCCCTTCCEEEEECCC------TTCEEEEEBTTSEEEEEEGGGGCCCSTTCEECBCCCTT-CCBCCCEECC----
T ss_pred eHHhccCCCCCCeEEEEEEec------CCceEEEEeCCceEEEecHHHhcccCccceEEEeeCCC-CEEEEEEEec----
Confidence 33322 344566654331 23579999999999988875321111222444567653 3354444321
Q ss_pred CCceEEEEEECCCeEEEEec
Q 002318 180 NGTRYYVMAVTPTRLYSFTG 199 (936)
Q Consensus 180 ~~~~~~i~ast~~rly~f~~ 199 (936)
.+...++++|...++..|..
T Consensus 612 ~~~~~v~l~t~~g~~lrf~~ 631 (716)
T 1zvu_A 612 DASDMLLAITQAGRMLMFPV 631 (716)
T ss_dssp CTTCEEEEEETTSEEEEEES
T ss_pred CCCCEEEEEeCCCeEEEEEH
Confidence 12247888899999998965
No 484
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*
Probab=40.23 E-value=3.1e+02 Score=32.13 Aligned_cols=89 Identities=13% Similarity=0.089 Sum_probs=48.5
Q ss_pred eeEEEEeC--CEEEEEecC----CeEEEEeC-CCC-CceeeEcCCCCCCccceeEEEeCCCCCeEEEEeecC-CCccEEE
Q 002318 24 ITCMSAGN--DVIVLGTSK----GWLIRHDF-GAG-DSYDIDLSAGRPGEQSIHKVFVDPGGSHCIATIVGS-GGAETFY 94 (936)
Q Consensus 24 i~~l~v~~--n~l~l~~~~----g~l~ridl-~~~-~~~~~~l~~~~~~~~~i~~i~lDp~G~hlli~~~~~-~~g~~~Y 94 (936)
..+++++. +.|++.... +.|+.+|+ .|+ ....+..+. ...... ++|.|.++++.++.. .++..+-
T Consensus 236 ~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~l~~~~-----~~~~~~-~~~~g~~l~~~t~~~~~~~~l~~ 309 (693)
T 3iuj_A 236 YVGATVTEDDRFLLISAANSTSGNRLYVKDLSQENAPLLTVQGDL-----DADVSL-VDNKGSTLYLLTNRDAPNRRLVT 309 (693)
T ss_dssp EEEEEECTTSCEEEEEEESSSSCCEEEEEETTSTTCCCEEEECSS-----SSCEEE-EEEETTEEEEEECTTCTTCEEEE
T ss_pred EEEEEEcCCCCEEEEEEccCCCCcEEEEEECCCCCCceEEEeCCC-----CceEEE-EeccCCEEEEEECCCCCCCEEEE
Confidence 45666654 466665542 48999999 654 344443331 222333 567889999988721 2355666
Q ss_pred EecCCCCc---eeccCCCCceEEEEEec
Q 002318 95 THAKWSKP---RVLSKLKGLVVNAVAWN 119 (936)
Q Consensus 95 ~~~~~~k~---k~L~klkg~~I~sVaw~ 119 (936)
+....... +.|..-.+..+ ++.++
T Consensus 310 ~d~~~~~~~~~~~l~~~~~~~~-~~s~~ 336 (693)
T 3iuj_A 310 VDAANPGPAHWRDLIPERQQVL-TVHSG 336 (693)
T ss_dssp EETTSCCGGGCEEEECCCSSCE-EEEEE
T ss_pred EeCCCCCccccEEEecCCCCEE-EEEEE
Confidence 66554433 44433333344 55544
No 485
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=40.16 E-value=2.3e+02 Score=30.06 Aligned_cols=113 Identities=12% Similarity=-0.020 Sum_probs=0.0
Q ss_pred EEEEe--CCEEEEEe----------cCCeEEEEeC-CCCCceeeEcCCCCC-CccceeEEEeCCCCCeEEEEeecCCCcc
Q 002318 26 CMSAG--NDVIVLGT----------SKGWLIRHDF-GAGDSYDIDLSAGRP-GEQSIHKVFVDPGGSHCIATIVGSGGAE 91 (936)
Q Consensus 26 ~l~v~--~n~l~l~~----------~~g~l~ridl-~~~~~~~~~l~~~~~-~~~~i~~i~lDp~G~hlli~~~~~~~g~ 91 (936)
+++++ ++.+|++- ..+.|..||. ....+.+++++.... .......+.++|.|++++++.. +..
T Consensus 54 ~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~~~~~i~~~~~~~~~g~~p~~i~~spdg~~l~v~n~---~~~ 130 (361)
T 2oiz_A 54 HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKLTFEKEISLPPKRVQGLNYDGLFRQTTDGKFIVLQNA---SPA 130 (361)
T ss_dssp EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTCCEEEEEEECTTBCCBCCCGGGEEECTTSSEEEEEEE---SSS
T ss_pred ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCCcEEEEEEcCccccccCCCcceEEECCCCCEEEEECC---CCC
Q ss_pred EEEEecCCCCceeccC-CCCceEEEEEecCCCCCCCCcceEEEEcCCCcEEEEEEe
Q 002318 92 TFYTHAKWSKPRVLSK-LKGLVVNAVAWNRQQITEASTKEIILGTDTGQLHEMAVD 146 (936)
Q Consensus 92 ~~Y~~~~~~k~k~L~k-lkg~~I~sVaw~~~~~~~~st~~iLiGt~~G~i~e~~i~ 146 (936)
.--.-......+.+.. +..-....+.+.+.... .++..+.+|.+....++
T Consensus 131 ~~v~v~d~~~~~~~~~~i~~~~~~~v~~~p~~~~-----~~~~~~~dg~~~~v~~~ 181 (361)
T 2oiz_A 131 TSIGIVDVAKGDYVEDVTAAAGCWSVIPQPNRPR-----SFMTICGDGGLLTINLG 181 (361)
T ss_dssp EEEEEEETTTTEEEEEEGGGTTEEEEEECTTSSS-----EEEEEETTSSEEEEEEC
T ss_pred CeEEEEECCCCcEEEEEecCCCcceeEEcCCCCe-----eEEEECCCCcEEEEEEC
No 486
>1zbd_B Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: g.50.1.1
Probab=40.01 E-value=25 Score=32.42 Aligned_cols=74 Identities=18% Similarity=0.324 Sum_probs=42.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccEeecccccccccchhhhhcccccccccccCCCCCCCC
Q 002318 785 KEAICSSLDDYNKQIEQLKQEMNDATHGADNIRNDISALAQRYAVIDRDEDCGVCRRKILVAGRDYRMARGYASVGPMAP 864 (936)
Q Consensus 785 Kd~I~~~L~~y~~~i~~l~~~m~~~~~~~~~i~~~i~~~~~r~~~i~~~~~C~~C~k~L~~~~~~~~~~~~~~~~~~~~~ 864 (936)
++.|...|+..... +...+ +....++.++.+++.+..- .....|..|++++...+. + .
T Consensus 15 ~~~Il~Vl~Rd~~l-~~~E~------~ri~kL~~~l~~~k~~~~~-~~~~~C~~C~~~~g~l~~--~------------g 72 (134)
T 1zbd_B 15 KEIINRVIARAEKM-ETMEQ------ERIGRLVDRLETMRKNVAG-DGVNRCILCGEQLGMLGS--A------------S 72 (134)
T ss_dssp HHHHHHHHHHHHHH-HHHHH------HHHHHHHHHHHHHHHTCCS-CSSSBCSSSCCBCSTTSC--C------------E
T ss_pred HHHHHHHHhhHHHH-HHhHH------HHHHHHHHHHHHHHHHhcc-CCCccccccCCCcccccC--C------------C
Confidence 45666666665322 21111 1134566777777655332 457789999999842110 1 4
Q ss_pred EEEEcCCChhHHHhHH
Q 002318 865 FYVFPCGHAFHAQCLI 880 (936)
Q Consensus 865 fvvFpCgH~fH~~CL~ 880 (936)
.+-.-|+|-+-.+|-.
T Consensus 73 ~~C~~C~~~VC~~C~~ 88 (134)
T 1zbd_B 73 VVCEDCKKNVCTKCGV 88 (134)
T ss_dssp EECTTTCCEEETTSEE
T ss_pred CCCCCCCcccccccCC
Confidence 4555688887777764
No 487
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=39.84 E-value=43 Score=36.34 Aligned_cols=49 Identities=10% Similarity=0.129 Sum_probs=38.8
Q ss_pred HHHchhhHHHHHHhcCChh--------------------hHHHHHHHHHHHHHhcCCHHHHHHHHHHhc
Q 002318 370 VYLDMKEYAAALANCRDPL--------------------QRDQVYLVQAEAAFATKDFHRAASFYAKIN 418 (936)
Q Consensus 370 ~ll~~~~f~~Al~~~~~~~--------------------~~~~I~~~~~~~L~~~g~y~~Aa~~y~~~~ 418 (936)
.++++|+|++|++..+... ....++...|.-++..|+|++|...|.+..
T Consensus 232 ~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al 300 (370)
T 1ihg_A 232 TFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEAL 300 (370)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHH
Confidence 4677889999988754211 234678889999999999999999999876
No 488
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=39.41 E-value=51 Score=36.73 Aligned_cols=49 Identities=10% Similarity=-0.016 Sum_probs=30.2
Q ss_pred HHHchhhHHHHHHhcCCh------------hhHHHHHHHHHHHHHhcCCHHHHHHHHHHhc
Q 002318 370 VYLDMKEYAAALANCRDP------------LQRDQVYLVQAEAAFATKDFHRAASFYAKIN 418 (936)
Q Consensus 370 ~ll~~~~f~~Al~~~~~~------------~~~~~I~~~~~~~L~~~g~y~~Aa~~y~~~~ 418 (936)
+|..+|+|++|+.+++.. ......+..-|.-+..+|+|++|..+|.+..
T Consensus 338 ~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~nLa~~~~~~g~~~eA~~~~~~Al 398 (429)
T 3qwp_A 338 ACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMKVGKLQLHQGMFPQAMKNLRLAF 398 (429)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 355667777777776521 1234445556666666777777777776665
No 489
>1zi0_A DNA gyrase subunit A; beta pinwheel, topoisomerase, spiralling beta pinwheel, DNA wrapping, isomerase, DNA bindng protein; HET: DNA; 2.60A {Escherichia coli}
Probab=39.12 E-value=3.6e+02 Score=28.16 Aligned_cols=160 Identities=13% Similarity=0.065 Sum_probs=87.8
Q ss_pred CceeEEEE-----eCCEEEEEecCCeEEEEeC---CCCCceeeE-cCCCCCCccceeEEEeCCCCCeEEEEeecCCCccE
Q 002318 22 GVITCMSA-----GNDVIVLGTSKGWLIRHDF---GAGDSYDID-LSAGRPGEQSIHKVFVDPGGSHCIATIVGSGGAET 92 (936)
Q Consensus 22 ~~i~~l~v-----~~n~l~l~~~~g~l~ridl---~~~~~~~~~-l~~~~~~~~~i~~i~lDp~G~hlli~~~~~~~g~~ 92 (936)
+.|.++.. .+..+++++.+|.+-|..+ .+..-..+. +... . .+.+-.+..-....++++.|+ +|..
T Consensus 95 e~i~~~~~~~~~~~~~~ll~~T~~G~~Krt~l~e~~~~~r~G~~~i~l~-~-~d~lv~~~~~~~~~~i~l~T~---~G~~ 169 (307)
T 1zi0_A 95 ERITAILPVTEFEEGVKVFMATANGTVKKTVLTEFNRLRTAGKVAIKLV-D-GDELIGVDLTSGEDEVMLFSA---EGKV 169 (307)
T ss_dssp CCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGTTCCTTCEESSCCC-T-TCCEEEEEEECTTCEEEEEET---TSEE
T ss_pred CEEEEEEEeccCCCCcEEEEEeCCCeEEEEEHHHhhccccCCeEEEEEC-C-CCEEEEEEEeCCCCEEEEECC---CCcE
Confidence 45666544 2347999999999999977 111111111 1111 1 245555555334557777777 7888
Q ss_pred EEEecCC-------CCceeccCC-CCceEEEEEecCCCCCCCCcceEEEEcCCCcEEEEEEecC---CcccceeeEEeee
Q 002318 93 FYTHAKW-------SKPRVLSKL-KGLVVNAVAWNRQQITEASTKEIILGTDTGQLHEMAVDEK---DKREKYIKLLFEL 161 (936)
Q Consensus 93 ~Y~~~~~-------~k~k~L~kl-kg~~I~sVaw~~~~~~~~st~~iLiGt~~G~i~e~~i~~~---~~~~~~~k~v~~l 161 (936)
+-+.... .+-..+.+| .|-.|.+++..++ ...+|+.|.+|..-.+.+..- .+.-+..+ ++.+
T Consensus 170 irf~~~~v~~~gr~a~Gv~~i~L~~~d~Vv~~~~~~~------~~~ll~~T~~G~~Kr~~~~e~~~~~Rg~kG~~-~~~~ 242 (307)
T 1zi0_A 170 VRFKESSVRAMGCNTTGVRGIRLGEGDKVVSLIVPRG------DGAILTATQNGYGKRTAVAEYPTKSRATKGVI-SIKV 242 (307)
T ss_dssp EEEEGGGSCBCCTTCCCEECCCCCTTCCEEEEECCCS------SCEEEEEETTSEEEEECGGGSCCCCTTSCCEE-SSCC
T ss_pred EEEEHHHcCccCCCCCCeEeEEeCCCCEEEEEEEecC------CCEEEEEEcCCceEEEEHHHhccCCCCCCCEE-eeEe
Confidence 7665422 121222233 3445666654411 126999999998666655311 11112222 2355
Q ss_pred CCCCCceeeEEEEeeccCCCceEEEEEECCCeEEEEe
Q 002318 162 NELPEAFMGLQMETASLSNGTRYYVMAVTPTRLYSFT 198 (936)
Q Consensus 162 ~~~~~~I~gi~~~~~~~~~~~~~~i~ast~~rly~f~ 198 (936)
.+.++.+-++.... + ..-++++|+..++..|.
T Consensus 243 ~~~~~~lv~~~~v~----~-~~~l~~~t~~g~~ir~~ 274 (307)
T 1zi0_A 243 TERNGLVVGAVQVD----D-CDQIMMITDAGTLVRTR 274 (307)
T ss_dssp CTTTCSEEEEEEEC----T-TCEEEEEESSCCEEEEE
T ss_pred cCCCCeEEEEEEeC----C-CceEEEEcCCCcEEEEe
Confidence 55456777766542 2 24566778888888774
No 490
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}
Probab=38.73 E-value=45 Score=39.47 Aligned_cols=73 Identities=14% Similarity=0.168 Sum_probs=50.2
Q ss_pred eeEEEEeCC--EEEEEec---------CCeEEEEeCCCCCc-eeeEcCCCCCCccceeEEEeCCCCCeEEEEeecCCCcc
Q 002318 24 ITCMSAGND--VIVLGTS---------KGWLIRHDFGAGDS-YDIDLSAGRPGEQSIHKVFVDPGGSHCIATIVGSGGAE 91 (936)
Q Consensus 24 i~~l~v~~n--~l~l~~~---------~g~l~ridl~~~~~-~~~~l~~~~~~~~~i~~i~lDp~G~hlli~~~~~~~g~ 91 (936)
+.+++++.+ .|+++.. .+.|+++|+...+. ....++ ..+..+...|.|++++.+.+ +.
T Consensus 62 ~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~~~g~~~~~~~l~------~~~~~~~~SPDG~~la~~~~----~~ 131 (719)
T 1z68_A 62 ASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIYDLSNGEFVRGNELP------RPIQYLCWSPVGSKLAYVYQ----NN 131 (719)
T ss_dssp CSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEECCSSCCC------SSBCCEEECSSTTCEEEEET----TE
T ss_pred eeeEEECCCCCeEEEEecCceeEEeecceEEEEEECCCCccccceecC------cccccceECCCCCEEEEEEC----Ce
Confidence 678888754 7777765 58999999932222 101222 34778899999999888754 78
Q ss_pred EEEEecCCCCceecc
Q 002318 92 TFYTHAKWSKPRVLS 106 (936)
Q Consensus 92 ~~Y~~~~~~k~k~L~ 106 (936)
.|++.....+.+.+.
T Consensus 132 i~~~~~~~g~~~~l~ 146 (719)
T 1z68_A 132 IYLKQRPGDPPFQIT 146 (719)
T ss_dssp EEEESSTTSCCEECC
T ss_pred EEEEeCCCCCcEEEe
Confidence 888877666666654
No 491
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=38.10 E-value=94 Score=35.32 Aligned_cols=147 Identities=7% Similarity=0.020 Sum_probs=77.6
Q ss_pred HHHHHHHhcccHHHHHHHHhCCCC--chhhHHhhHHHHHhH--------------ChHHHHHHHHc--cCCCCCCc----
Q 002318 539 IVVHHYIQQGEAKKALQMLRKPAV--PIDLQYKFAPDLIML--------------DAYETVESWMT--TNNLNPRK---- 596 (936)
Q Consensus 539 ~ll~~yi~~~~~~~AL~~L~~~~d--~~~li~k~~~~Ll~~--------------~p~~ti~ll~~--~~~ld~~~---- 596 (936)
.+++.|...|+.++|++++.+... ...-..-|.. ||.. .-+++.++|-+ ...+.|..
T Consensus 31 ~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~-Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~tyn 109 (501)
T 4g26_A 31 QKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNV-LLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNEATFT 109 (501)
T ss_dssp HHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHH-HHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCHHHHH
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHH-HHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCHHHHH
Confidence 367888899999999999875421 0011122322 2211 11344555522 23444443
Q ss_pred -chhHhhhcCCCCCCCCChHHHHHHHHHHHhhcCCCCHhHHHHHHHHhhcCCChHHHHHHHHHhhCCCCCCCCcccCChH
Q 002318 597 -LIPAMMRYSSEPHAKNETHEVIKYLEFCVHRLHNEDPGVHNLLLSLYAKQEDDSALLRFLQCKFGKGRENGPEFFYDPK 675 (936)
Q Consensus 597 -li~~L~~~~~~~~~~~~~~~~~~YLe~li~~~~~~~~~~hn~ll~Ly~~~~~~~~Ll~fL~~~~~~~~~~~~~~~yd~~ 675 (936)
+|..+.+. ...+.+...++.+....-..+...+|.+|..|++.++-++...+++.-...+. .-|..
T Consensus 110 ~lI~~~~~~-------g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~------~Pd~~ 176 (501)
T 4g26_A 110 NGARLAVAK-------DDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEV------VPEEP 176 (501)
T ss_dssp HHHHHHHHH-------TCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC------CCCHH
T ss_pred HHHHHHHhc-------CCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCC------CCCHH
Confidence 22222221 13456777777776554445677888888888886654444444443211110 11111
Q ss_pred HHHHHHHhcCcceeeehhhhccccHHHHHHHHHh
Q 002318 676 YALRLCLKEKRMRACVHIYGMMSMHEEAVALALQ 709 (936)
Q Consensus 676 ~aLrlc~~~~~~~~~v~L~~~~g~~~eAl~l~l~ 709 (936)
-+..++-.|++.|+.++|.+++-+
T Consensus 177 ----------ty~~Li~~~~~~g~~d~A~~ll~~ 200 (501)
T 4g26_A 177 ----------ELAALLKVSMDTKNADKVYKTLQR 200 (501)
T ss_dssp ----------HHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred ----------HHHHHHHHHhhCCCHHHHHHHHHH
Confidence 122344557788888888887654
No 492
>3mzk_B Protein transport protein SEC16; alpha-helical-stack, beta-propeller; 2.69A {Saccharomyces cerevisiae}
Probab=38.03 E-value=3.8e+02 Score=29.75 Aligned_cols=44 Identities=25% Similarity=0.366 Sum_probs=35.7
Q ss_pred hhccccHHHHHHHHHh-cCHHHHHHHhhccCCCHHHHHHHHHHHHHHHhhc
Q 002318 694 YGMMSMHEEAVALALQ-VDPELAMAEADKVEDDEDLRKKLWLMVAKHVIEQ 743 (936)
Q Consensus 694 ~~~~g~~~eAl~l~l~-~di~lA~~~a~~~~~d~~~~kkLWl~ll~~~i~~ 743 (936)
+-..|+.++||+.+++ ++...|.-+|... +++ +|.+..+.++.+
T Consensus 160 ~Ll~G~~e~Av~~al~~~lwa~ALlLAs~~--g~e----~~~~V~~~y~~~ 204 (441)
T 3mzk_B 160 FLQTGNHDEALRLALSKRDYAIALLVGSLM--GKD----RWSEVIQKYLYE 204 (441)
T ss_dssp HHHTTCHHHHHHHHHHTTCHHHHHHHHHTS--CHH----HHHHHHHHHHHC
T ss_pred HHHcCCHHHHHHHHHhCCcHHHHHHHHHhc--CHH----HHHHHHHHHHHh
Confidence 4567999999999999 7899999998443 444 899999888875
No 493
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=37.88 E-value=26 Score=33.37 Aligned_cols=49 Identities=14% Similarity=0.165 Sum_probs=37.8
Q ss_pred HHHchhhHHHHHHhcCChhhH-----------HHHH----HHHHHHHHhcCCHHHHHHHHHHhc
Q 002318 370 VYLDMKEYAAALANCRDPLQR-----------DQVY----LVQAEAAFATKDFHRAASFYAKIN 418 (936)
Q Consensus 370 ~ll~~~~f~~Al~~~~~~~~~-----------~~I~----~~~~~~L~~~g~y~~Aa~~y~~~~ 418 (936)
.+.+.|+|++|+..+...-.+ ...+ ...|.-|...|+|++|...|-+..
T Consensus 66 al~~Lgr~~eAl~~~~kAL~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAl 129 (159)
T 2hr2_A 66 ALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVV 129 (159)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHhhhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHH
Confidence 366778999999887532222 2445 788999999999999999999876
No 494
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=37.51 E-value=45 Score=30.97 Aligned_cols=50 Identities=18% Similarity=0.331 Sum_probs=38.2
Q ss_pred HHHHchhhHHHHHHhcCChh----hHHHHHHHHHHH-HHhcCCH--HHHHHHHHHhc
Q 002318 369 KVYLDMKEYAAALANCRDPL----QRDQVYLVQAEA-AFATKDF--HRAASFYAKIN 418 (936)
Q Consensus 369 ~~ll~~~~f~~Al~~~~~~~----~~~~I~~~~~~~-L~~~g~y--~~Aa~~y~~~~ 418 (936)
..++..|+|++|+.+.+... .-..+....|.. ++..|+| ++|...|.+..
T Consensus 52 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~~A~~~~~~al 108 (177)
T 2e2e_A 52 EYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTAQTRAMIDKAL 108 (177)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcchHHHHHHHHHHH
Confidence 35678899999999876421 124577788888 7789999 99999998765
No 495
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=37.46 E-value=47 Score=38.10 Aligned_cols=80 Identities=9% Similarity=-0.011 Sum_probs=52.3
Q ss_pred HHHHchhhHHHHHHhcCC----hhhHHHHHHHHHHHHHhcCCHHHHHHHHHHhc--CCC---ChHHHHHHhcCcChHHHH
Q 002318 369 KVYLDMKEYAAALANCRD----PLQRDQVYLVQAEAAFATKDFHRAASFYAKIN--YIL---SFEEITLKFISVSEQDAL 439 (936)
Q Consensus 369 ~~ll~~~~f~~Al~~~~~----~~~~~~I~~~~~~~L~~~g~y~~Aa~~y~~~~--~~~---~~E~v~lkFl~~~~~~~L 439 (936)
..++..|+|++|+++.+. ...-.......|.-++..|+|++|.+.|.+.. +.. .+-....-+...++.+.-
T Consensus 31 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A 110 (568)
T 2vsy_A 31 DAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLLQQASDAAPEHPGIALWLGHALEDAGQAEAA 110 (568)
T ss_dssp HHHHHHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHH
Confidence 357788999999998653 12235677888999999999999999999875 111 122233334445555554
Q ss_pred HHHHHHHhh
Q 002318 440 RTFLLRKLD 448 (936)
Q Consensus 440 ~~YL~~~l~ 448 (936)
..++..-+.
T Consensus 111 ~~~~~~al~ 119 (568)
T 2vsy_A 111 AAAYTRAHQ 119 (568)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 555554444
No 496
>1suu_A DNA gyrase subunit A; topoisomerase,DNA gyrase, beta-propeller, beta-pinwheel, ISO; HET: DNA; 1.75A {Borrelia burgdorferi} SCOP: b.68.10.1
Probab=37.17 E-value=3.8e+02 Score=27.98 Aligned_cols=157 Identities=9% Similarity=0.071 Sum_probs=86.2
Q ss_pred CceeEEEEe-----CCEEEEEecCCeEEEEeC--CCCC----ceeeEcCCCCCCccceeEEEeCCCCCeEEEEeecCCCc
Q 002318 22 GVITCMSAG-----NDVIVLGTSKGWLIRHDF--GAGD----SYDIDLSAGRPGEQSIHKVFVDPGGSHCIATIVGSGGA 90 (936)
Q Consensus 22 ~~i~~l~v~-----~n~l~l~~~~g~l~ridl--~~~~----~~~~~l~~~~~~~~~i~~i~lDp~G~hlli~~~~~~~g 90 (936)
+.|.++... +..+++++.+|.+.|..+ -+.. +.-+.+. . ++.+..+++-..+.++++.|. +|
T Consensus 100 e~i~~~~~~~~~~~~~~ll~~T~~G~~kr~~l~~~~~~r~~G~~~i~L~---~-~d~lv~~~~~~~~~~i~l~T~---~G 172 (312)
T 1suu_A 100 EEILTIKNSKDLTDDAYLLLTTASGKIARFESTDFKAVKSRGVIVIKLN---D-KDFVTSAEIVFKDEKVICLSK---KG 172 (312)
T ss_dssp CCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGCC----CEECBCCC---T-TCCEEEEEEECTTCEEEEEET---TS
T ss_pred CEEEEEEEeccCCCCCEEEEEeCCCeEEEEEHHHhhccCCCcEEEEecC---C-CCEEEEEEEeCCCCEEEEEeC---CC
Confidence 445555443 567999999999999988 2211 1112222 1 356666666434567888887 68
Q ss_pred cEEEEecCC-------CCceeccCC-CCceEEEEEecCCCCCCCCcceEEEEcCCCcEEEEEEecC---CcccceeeEEe
Q 002318 91 ETFYTHAKW-------SKPRVLSKL-KGLVVNAVAWNRQQITEASTKEIILGTDTGQLHEMAVDEK---DKREKYIKLLF 159 (936)
Q Consensus 91 ~~~Y~~~~~-------~k~k~L~kl-kg~~I~sVaw~~~~~~~~st~~iLiGt~~G~i~e~~i~~~---~~~~~~~k~v~ 159 (936)
..+-+.... .+-..+-++ .|-.|.+++.-++ ...+++.|++|....+.+..- .+.-+-++. +
T Consensus 173 ~~~r~~~~ev~~~gR~~~Gv~~i~L~~~d~vv~~~~v~~------~~~l~~vt~~G~~kr~~~~e~~~~~R~~kGv~~-~ 245 (312)
T 1suu_A 173 SAFIFNSRDVRLTNRGTQGVCGMKLKEGDLFVKVLSVKE------NPYLLIVSENGYGKRLNMSKISELKRGATGYTS-Y 245 (312)
T ss_dssp EEEEEEGGGSCBCCTTBCCEECCCCCTTCCEEEEEECTT------CSEEEEEETTSEEEEEEGGGSCBCCTTCCCEEC-S
T ss_pred cEEEEEHHHccccCCCCCCeEeEEeCCCCEEEEEEEECC------CCeEEEEECCCceEEEEHHHhcccCCCCCCEEe-e
Confidence 776554321 222333334 3555666665421 236999999998777776421 111223333 3
Q ss_pred eeC-CCCCceeeEEEEeeccCCCceEEEEEECCCeEEEE
Q 002318 160 ELN-ELPEAFMGLQMETASLSNGTRYYVMAVTPTRLYSF 197 (936)
Q Consensus 160 ~l~-~~~~~I~gi~~~~~~~~~~~~~~i~ast~~rly~f 197 (936)
.+. +.++.+.++.... +..-++++|...++..+
T Consensus 246 ~~~k~~~~~lv~~~~~~-----~~~~l~~~t~~g~~~r~ 279 (312)
T 1suu_A 246 KKSDKKAGSVVDAIAVS-----EDDEILLVSKRSKALRT 279 (312)
T ss_dssp CTTCTTTCSEEEEEEEC-----TTCEEEEEETTCEEEEE
T ss_pred EccCCCCCeEEEEEEeC-----CCCEEEEEeCCCeEEEE
Confidence 444 3344565544331 22355665666666655
No 497
>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}
Probab=37.02 E-value=4.5 Score=43.35 Aligned_cols=46 Identities=22% Similarity=0.335 Sum_probs=28.0
Q ss_pred ccccccccchhhhhcccccccccccCCCCCCCCEEEEcCCChhHHHhHHHHHhhcCC
Q 002318 832 RDEDCGVCRRKILVAGRDYRMARGYASVGPMAPFYVFPCGHAFHAQCLIAHVTQCTN 888 (936)
Q Consensus 832 ~~~~C~~C~k~L~~~~~~~~~~~~~~~~~~~~~fvvFpCgH~fH~~CL~~~~~~~~~ 888 (936)
....|++|-..+...+ .. ++. ..--=.|||.||..||.+......+
T Consensus 307 ~~~ECaICys~~l~~g---~l----Pdk----~C~n~~C~h~FH~~CL~kWLrs~~~ 352 (381)
T 3k1l_B 307 EELRCNICFAYRLDGG---EV----PLV----SCDNAKCVLKCHAVCLEEWFKTLMD 352 (381)
T ss_dssp SCCSCSSSCCSSCTTC---CC----CCB----CCSCTTCCCCBCSGGGHHHHHHHHS
T ss_pred CCccCcccceeecCCC---CC----ccc----cccCCccCCccchHHHHHHHHhCCC
Confidence 3457999997765521 10 000 0001169999999999998765433
No 498
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=36.83 E-value=4.6e+02 Score=28.77 Aligned_cols=13 Identities=46% Similarity=0.480 Sum_probs=8.5
Q ss_pred cccHHHHHHHHhC
Q 002318 547 QGEAKKALQMLRK 559 (936)
Q Consensus 547 ~~~~~~AL~~L~~ 559 (936)
.+++++|++.+.+
T Consensus 272 ~~d~~~A~~~~~~ 284 (490)
T 2xm6_A 272 AKEPLKALEWYRK 284 (490)
T ss_dssp SCCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHH
Confidence 5667777776654
No 499
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=36.81 E-value=27 Score=34.21 Aligned_cols=49 Identities=12% Similarity=0.025 Sum_probs=40.0
Q ss_pred HHHchhhHHHHHHhcCC----hhhHHHHHHHHHHHHHhcCCHHHHHHHHHHhc
Q 002318 370 VYLDMKEYAAALANCRD----PLQRDQVYLVQAEAAFATKDFHRAASFYAKIN 418 (936)
Q Consensus 370 ~ll~~~~f~~Al~~~~~----~~~~~~I~~~~~~~L~~~g~y~~Aa~~y~~~~ 418 (936)
.+...|+|++|++..+. ...-..+....|.-++..|+|++|...|.+..
T Consensus 51 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al 103 (228)
T 4i17_A 51 CADNIKKYKEAADYFDIAIKKNYNLANAYIGKSAAYRDMKNNQEYIATLTEGI 103 (228)
T ss_dssp HHHHTTCHHHHHHHHHHHHHTTCSHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHhhcHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 47778999999998763 22345778889999999999999999998875
No 500
>3f6q_B LIM and senescent cell antigen-like-containing domain protein 1; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 2kbx_B 3ixe_B
Probab=36.33 E-value=5.3 Score=32.03 Aligned_cols=32 Identities=22% Similarity=0.508 Sum_probs=23.9
Q ss_pred ccccccccchhhhhcccccccccccCCCCCCCCEEEEcCCChhHHHhHH
Q 002318 832 RDEDCGVCRRKILVAGRDYRMARGYASVGPMAPFYVFPCGHAFHAQCLI 880 (936)
Q Consensus 832 ~~~~C~~C~k~L~~~~~~~~~~~~~~~~~~~~~fvvFpCgH~fH~~CL~ 880 (936)
...+|..|+++|.. . ..++-.-|..||..|+.
T Consensus 10 ~~~~C~~C~~~i~~-----~------------e~~~~~~~~~~H~~CF~ 41 (72)
T 3f6q_B 10 ASATCERCKGGFAP-----A------------EKIVNSNGELYHEQCFV 41 (72)
T ss_dssp TTCBCTTTCCBCCT-----T------------CEEEEETTEEEETTTSS
T ss_pred CCccchhcCccccC-----C------------ceEEEeCcCeeCcCCCc
Confidence 46789999999986 2 44555667788888874
Done!