Query 002320
Match_columns 936
No_of_seqs 468 out of 1861
Neff 5.0
Searched_HMMs 46136
Date Thu Mar 28 21:26:01 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002320.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/002320hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1244 Predicted transcriptio 99.0 7.2E-11 1.6E-15 125.2 0.2 103 543-705 221-329 (336)
2 KOG0956 PHD finger protein AF1 98.9 4.8E-10 1E-14 130.3 4.7 142 567-714 19-187 (900)
3 PRK10314 putative acyltransfer 98.9 3.5E-09 7.6E-14 105.6 9.8 115 763-889 16-135 (153)
4 COG1246 ArgA N-acetylglutamate 98.9 2.8E-09 6E-14 106.6 6.9 90 800-893 38-128 (153)
5 PF13508 Acetyltransf_7: Acety 98.9 1.4E-08 3E-13 89.2 10.6 76 805-885 4-79 (79)
6 PF00583 Acetyltransf_1: Acety 98.8 1.9E-08 4.1E-13 87.5 9.4 74 810-884 2-83 (83)
7 KOG1512 PHD Zn-finger protein 98.8 1.7E-09 3.6E-14 115.6 1.5 81 567-705 276-361 (381)
8 PF13673 Acetyltransf_10: Acet 98.8 4.9E-08 1.1E-12 90.2 10.2 74 804-883 44-117 (117)
9 PF15446 zf-PHD-like: PHD/FYVE 98.7 1.9E-08 4.1E-13 101.3 5.0 133 548-686 1-143 (175)
10 PTZ00330 acetyltransferase; Pr 98.6 2E-07 4.4E-12 89.6 10.1 83 805-888 53-141 (147)
11 KOG4323 Polycomb-like PHD Zn-f 98.6 3.9E-08 8.5E-13 112.7 5.5 209 544-775 81-300 (464)
12 PRK10146 aminoalkylphosphonic 98.6 2.4E-07 5.2E-12 88.8 9.0 80 807-887 50-137 (144)
13 PLN02706 glucosamine 6-phospha 98.5 3.8E-07 8.2E-12 88.7 10.0 82 805-887 54-143 (150)
14 PF13527 Acetyltransf_9: Acety 98.5 4.3E-07 9.4E-12 85.6 10.0 111 764-886 10-127 (127)
15 PRK07922 N-acetylglutamate syn 98.5 3.9E-07 8.5E-12 92.2 9.6 79 807-888 48-127 (169)
16 KOG0954 PHD finger protein [Ge 98.5 5.4E-08 1.2E-12 114.6 3.4 153 540-708 265-440 (893)
17 PLN02825 amino-acid N-acetyltr 98.5 5.2E-07 1.1E-11 106.2 11.2 89 807-897 410-499 (515)
18 cd02169 Citrate_lyase_ligase C 98.5 3.7E-07 7.9E-12 101.0 9.3 74 808-887 10-83 (297)
19 KOG0825 PHD Zn-finger protein 98.5 3.9E-08 8.5E-13 115.9 1.7 52 644-706 213-265 (1134)
20 PRK07757 acetyltransferase; Pr 98.5 6.2E-07 1.3E-11 87.4 9.8 82 807-891 44-125 (152)
21 COG5141 PHD zinc finger-contai 98.5 4E-08 8.7E-13 111.3 1.6 131 544-691 191-342 (669)
22 KOG4299 PHD Zn-finger protein 98.4 8.7E-08 1.9E-12 112.1 3.2 59 536-603 241-305 (613)
23 PRK03624 putative acetyltransf 98.4 6.4E-07 1.4E-11 84.2 8.5 82 805-888 46-130 (140)
24 TIGR01575 rimI ribosomal-prote 98.4 1.5E-06 3.2E-11 81.0 10.8 80 807-888 34-116 (131)
25 KOG4299 PHD Zn-finger protein 98.4 1.2E-07 2.7E-12 110.8 3.6 49 648-705 255-303 (613)
26 COG2153 ElaA Predicted acyltra 98.4 8.1E-07 1.8E-11 88.1 8.7 83 807-890 53-138 (155)
27 KOG0955 PHD finger protein BR1 98.4 1.5E-07 3.3E-12 116.8 4.2 129 544-689 217-367 (1051)
28 KOG0383 Predicted helicase [Ge 98.4 1.3E-07 2.9E-12 113.5 3.2 155 575-771 1-162 (696)
29 TIGR01890 N-Ac-Glu-synth amino 98.4 1.2E-06 2.6E-11 101.1 10.6 84 807-892 325-409 (429)
30 TIGR02382 wecD_rffC TDP-D-fuco 98.4 2E-06 4.3E-11 88.2 10.1 80 808-888 103-185 (191)
31 PRK10975 TDP-fucosamine acetyl 98.3 2.1E-06 4.6E-11 87.9 10.2 86 802-888 100-188 (194)
32 TIGR00124 cit_ly_ligase [citra 98.3 1.6E-06 3.5E-11 97.3 9.8 82 802-889 29-110 (332)
33 TIGR03827 GNAT_ablB putative b 98.3 2.9E-06 6.3E-11 91.8 10.6 84 804-888 158-245 (266)
34 PRK05279 N-acetylglutamate syn 98.3 2.4E-06 5.2E-11 98.9 10.2 84 807-892 337-421 (441)
35 PRK09491 rimI ribosomal-protei 98.3 5.6E-06 1.2E-10 80.3 10.7 85 802-888 38-125 (146)
36 PRK12308 bifunctional arginino 98.2 2.7E-06 6E-11 102.4 9.6 82 807-891 506-587 (614)
37 KOG3396 Glucosamine-phosphate 98.1 5.2E-06 1.1E-10 81.6 7.4 85 804-889 53-145 (150)
38 PRK13688 hypothetical protein; 98.1 9.3E-06 2E-10 82.0 9.2 77 807-889 48-134 (156)
39 PRK09831 putative acyltransfer 98.1 7E-06 1.5E-10 80.3 8.0 73 807-890 56-128 (147)
40 PRK10140 putative acetyltransf 98.1 1.4E-05 3E-10 77.9 9.9 85 804-890 51-143 (162)
41 PHA00673 acetyltransferase dom 98.1 2.1E-05 4.7E-10 79.5 10.7 83 805-888 56-146 (154)
42 TIGR03448 mycothiol_MshD mycot 98.1 2.5E-05 5.3E-10 84.5 11.7 81 805-888 47-128 (292)
43 KOG4443 Putative transcription 98.1 1.7E-06 3.6E-11 101.8 2.3 79 566-700 31-112 (694)
44 TIGR03448 mycothiol_MshD mycot 97.9 3.4E-05 7.3E-10 83.5 9.5 76 812-888 208-288 (292)
45 TIGR02406 ectoine_EctA L-2,4-d 97.9 4.6E-05 9.9E-10 76.1 9.3 83 805-888 40-128 (157)
46 KOG3139 N-acetyltransferase [G 97.9 6.9E-05 1.5E-09 75.8 9.8 73 815-888 68-146 (165)
47 PF08445 FR47: FR47-like prote 97.9 7.3E-05 1.6E-09 68.1 9.1 73 814-888 8-82 (86)
48 PF00628 PHD: PHD-finger; Int 97.9 2.8E-06 6E-11 69.6 -0.2 48 649-705 2-49 (51)
49 TIGR03103 trio_acet_GNAT GNAT- 97.9 5.7E-05 1.2E-09 90.1 10.5 85 803-888 122-217 (547)
50 PF13420 Acetyltransf_4: Acety 97.8 0.00014 3E-09 70.8 10.7 80 807-888 53-139 (155)
51 COG0456 RimI Acetyltransferase 97.8 5.8E-05 1.3E-09 74.7 8.0 76 814-890 72-156 (177)
52 smart00249 PHD PHD zinc finger 97.8 1.8E-05 4E-10 62.1 3.4 46 649-704 2-47 (47)
53 PRK01346 hypothetical protein; 97.8 8.4E-05 1.8E-09 84.9 9.8 80 806-888 49-136 (411)
54 cd04301 NAT_SF N-Acyltransfera 97.8 0.0001 2.3E-09 58.5 7.6 61 807-867 2-64 (65)
55 COG3393 Predicted acetyltransf 97.7 8.6E-05 1.9E-09 80.4 8.3 83 805-888 178-262 (268)
56 PRK10514 putative acetyltransf 97.7 0.00016 3.5E-09 69.6 9.1 75 808-890 54-128 (145)
57 KOG1512 PHD Zn-finger protein 97.7 1.5E-05 3.1E-10 86.1 1.9 53 541-602 309-362 (381)
58 KOG0383 Predicted helicase [Ge 97.7 2.3E-05 5E-10 94.7 3.8 49 543-603 44-94 (696)
59 PRK10562 putative acetyltransf 97.7 0.00017 3.7E-09 70.1 8.8 76 807-889 51-126 (145)
60 PF00628 PHD: PHD-finger; Int 97.7 2.5E-05 5.4E-10 64.0 2.3 46 548-602 1-50 (51)
61 PRK15130 spermidine N1-acetylt 97.6 0.00027 5.9E-09 71.5 10.0 81 806-888 59-145 (186)
62 PF13523 Acetyltransf_8: Acety 97.6 0.00036 7.9E-09 68.2 10.4 86 802-888 46-141 (152)
63 PF13718 GNAT_acetyltr_2: GNAT 97.6 0.00037 8E-09 73.2 10.3 88 800-888 23-176 (196)
64 TIGR03585 PseH pseudaminic aci 97.6 0.00051 1.1E-08 66.8 10.5 81 807-890 54-140 (156)
65 KOG1244 Predicted transcriptio 97.6 2.8E-05 6.2E-10 83.5 1.7 51 545-604 280-332 (336)
66 TIGR01686 FkbH FkbH-like domai 97.6 0.00026 5.7E-09 78.8 9.4 82 803-886 230-319 (320)
67 KOG1473 Nucleosome remodeling 97.6 1.7E-05 3.8E-10 97.4 -0.1 127 544-708 342-480 (1414)
68 TIGR01211 ELP3 histone acetylt 97.5 0.00026 5.7E-09 84.0 9.6 76 812-888 422-516 (522)
69 PHA01807 hypothetical protein 97.5 0.0002 4.3E-09 72.3 7.3 76 804-879 53-135 (153)
70 smart00249 PHD PHD zinc finger 97.4 0.00013 2.8E-09 57.3 3.4 44 548-600 1-47 (47)
71 KOG3397 Acetyltransferases [Ge 97.4 0.00025 5.5E-09 72.4 5.6 83 805-889 56-142 (225)
72 COG5034 TNG2 Chromatin remodel 97.3 0.00024 5.3E-09 76.2 4.9 49 543-602 218-269 (271)
73 KOG1973 Chromatin remodeling p 97.2 0.00014 3E-09 79.9 2.3 49 544-603 217-268 (274)
74 COG3153 Predicted acetyltransf 97.2 0.001 2.2E-08 68.6 8.3 135 763-916 13-152 (171)
75 PRK10809 ribosomal-protein-S5- 97.2 0.0013 2.9E-08 67.0 9.3 83 804-888 77-166 (194)
76 PRK10151 ribosomal-protein-L7/ 97.1 0.0031 6.6E-08 63.5 10.4 81 807-889 70-156 (179)
77 COG5034 TNG2 Chromatin remodel 97.1 0.00024 5.2E-09 76.2 2.0 47 645-706 220-269 (271)
78 PF13302 Acetyltransf_3: Acety 97.1 0.0032 6.9E-08 59.8 9.5 79 804-884 56-142 (142)
79 KOG1973 Chromatin remodeling p 97.0 0.00022 4.7E-09 78.4 1.3 35 664-705 229-266 (274)
80 KOG0825 PHD Zn-finger protein 97.0 0.00022 4.9E-09 85.2 1.5 49 545-602 214-265 (1134)
81 KOG0957 PHD finger protein [Ge 97.0 0.00034 7.3E-09 80.4 2.2 127 548-686 121-276 (707)
82 COG1247 Sortase and related ac 96.9 0.0048 1E-07 63.6 9.3 113 798-916 46-166 (169)
83 KOG3216 Diamine acetyltransfer 96.8 0.013 2.9E-07 59.2 11.5 123 759-888 15-146 (163)
84 KOG4443 Putative transcription 96.8 0.00058 1.2E-08 81.1 1.9 139 537-705 59-200 (694)
85 KOG0957 PHD finger protein [Ge 96.6 0.00064 1.4E-08 78.3 1.1 46 648-704 546-595 (707)
86 PF13831 PHD_2: PHD-finger; PD 96.3 0.00084 1.8E-08 52.3 -0.3 34 568-601 2-36 (36)
87 cd04718 BAH_plant_2 BAH, or Br 96.3 0.002 4.3E-08 64.8 1.9 26 676-706 1-26 (148)
88 PF12746 GNAT_acetyltran: GNAT 96.2 0.031 6.7E-07 61.5 10.6 79 808-888 169-247 (265)
89 KOG0955 PHD finger protein BR1 96.1 0.0035 7.6E-08 79.1 3.2 53 645-708 218-270 (1051)
90 KOG0956 PHD finger protein AF1 96.0 0.0032 6.9E-08 75.1 2.0 50 645-705 4-55 (900)
91 cd04718 BAH_plant_2 BAH, or Br 95.7 0.0056 1.2E-07 61.7 2.0 25 579-603 1-27 (148)
92 PF08444 Gly_acyl_tr_C: Aralky 95.7 0.022 4.7E-07 53.1 5.6 73 809-887 4-79 (89)
93 KOG1245 Chromatin remodeling c 95.6 0.0033 7.1E-08 82.0 0.2 62 644-716 1106-1167(1404)
94 COG1444 Predicted P-loop ATPas 95.5 0.017 3.6E-07 71.1 5.4 58 829-888 532-591 (758)
95 COG0454 WecD Histone acetyltra 95.4 0.021 4.6E-07 48.0 4.3 44 834-883 87-130 (156)
96 PF14542 Acetyltransf_CG: GCN5 95.1 0.11 2.3E-06 47.0 8.0 57 808-865 3-59 (78)
97 PF12568 DUF3749: Acetyltransf 95.0 0.17 3.6E-06 50.2 9.8 80 804-888 40-125 (128)
98 COG3053 CitC Citrate lyase syn 94.8 0.1 2.2E-06 57.9 8.4 79 804-888 37-115 (352)
99 KOG4144 Arylalkylamine N-acety 94.8 0.02 4.4E-07 58.0 2.9 60 828-888 101-161 (190)
100 COG1670 RimL Acetyltransferase 94.5 0.18 4E-06 49.4 8.9 90 800-891 62-161 (187)
101 KOG2488 Acetyltransferase (GNA 94.2 0.14 2.9E-06 53.8 7.2 84 804-888 93-182 (202)
102 KOG0954 PHD finger protein [Ge 94.2 0.021 4.5E-07 69.0 1.5 50 645-705 270-319 (893)
103 COG2388 Predicted acetyltransf 94.0 0.13 2.7E-06 49.0 6.0 60 802-863 15-74 (99)
104 COG5141 PHD zinc finger-contai 93.9 0.023 5.1E-07 65.8 1.2 48 647-705 194-241 (669)
105 KOG1245 Chromatin remodeling c 93.7 0.016 3.4E-07 75.9 -0.6 51 544-603 1106-1158(1404)
106 KOG4323 Polycomb-like PHD Zn-f 93.6 0.036 7.9E-07 64.8 2.1 50 547-603 169-224 (464)
107 KOG3138 Predicted N-acetyltran 92.9 0.091 2E-06 55.1 3.7 61 828-889 89-153 (187)
108 COG4552 Eis Predicted acetyltr 92.6 0.15 3.2E-06 57.9 5.0 84 798-888 35-127 (389)
109 PF06852 DUF1248: Protein of u 92.1 0.72 1.6E-05 48.3 9.0 82 805-888 48-137 (181)
110 smart00258 SAND SAND domain. 92.1 0.13 2.8E-06 46.3 3.0 50 260-311 19-69 (73)
111 COG1243 ELP3 Histone acetyltra 92.0 0.13 2.8E-06 60.1 3.7 51 837-888 459-509 (515)
112 PF13831 PHD_2: PHD-finger; PD 91.9 0.024 5.3E-07 44.2 -1.5 33 665-704 2-35 (36)
113 PF13480 Acetyltransf_6: Acety 91.1 1.2 2.7E-05 42.0 8.8 66 804-870 71-136 (142)
114 KOG3234 Acetyltransferase, (GN 90.9 0.31 6.7E-06 49.9 4.6 59 827-886 68-129 (173)
115 TIGR03694 exosort_acyl putativ 90.5 2.3 4.9E-05 46.3 11.2 121 760-885 15-195 (241)
116 PF01342 SAND: SAND domain; I 90.5 0.1 2.2E-06 47.9 0.8 55 255-311 18-78 (82)
117 KOG3235 Subunit of the major N 89.2 1.2 2.5E-05 46.0 7.1 82 807-888 44-135 (193)
118 KOG2036 Predicted P-loop ATPas 89.1 0.35 7.5E-06 58.9 3.8 52 782-855 590-641 (1011)
119 PF12861 zf-Apc11: Anaphase-pr 88.1 0.23 5E-06 46.0 1.2 60 544-604 19-81 (85)
120 PF12678 zf-rbx1: RING-H2 zinc 87.1 0.16 3.5E-06 45.4 -0.4 54 546-601 19-73 (73)
121 PF07897 DUF1675: Protein of u 85.9 1.1 2.5E-05 49.9 5.3 68 226-297 209-283 (284)
122 PRK13834 putative autoinducer 85.5 5 0.00011 42.8 9.7 118 761-885 15-162 (207)
123 PF00765 Autoind_synth: Autoin 84.8 5.2 0.00011 41.9 9.2 116 762-885 8-152 (182)
124 COG3981 Predicted acetyltransf 83.7 2.1 4.5E-05 44.6 5.6 67 804-872 70-141 (174)
125 PF13639 zf-RING_2: Ring finge 83.0 0.12 2.5E-06 41.3 -2.9 44 547-601 1-44 (44)
126 PF14446 Prok-RING_1: Prokaryo 82.4 0.78 1.7E-05 39.2 1.7 34 545-586 4-37 (54)
127 KOG1473 Nucleosome remodeling 78.8 1 2.3E-05 57.2 1.8 45 647-705 345-389 (1414)
128 KOG2535 RNA polymerase II elon 78.5 6.2 0.00013 45.1 7.4 67 820-890 481-549 (554)
129 PF07227 DUF1423: Protein of u 78.0 2.3 5.1E-05 49.9 4.2 56 649-708 131-193 (446)
130 cd04264 DUF619-NAGS DUF619 dom 77.1 5.2 0.00011 38.2 5.5 49 810-858 14-64 (99)
131 PF11793 FANCL_C: FANCL C-term 74.2 1.8 3.9E-05 38.5 1.6 52 547-604 3-65 (70)
132 PF13832 zf-HC5HC2H_2: PHD-zin 72.9 1.6 3.5E-05 41.3 1.0 33 647-687 56-90 (110)
133 PF02474 NodA: Nodulation prot 72.6 5.5 0.00012 41.7 4.7 51 828-879 85-135 (196)
134 PF14446 Prok-RING_1: Prokaryo 69.8 3.1 6.8E-05 35.6 1.9 35 647-686 6-40 (54)
135 PF13771 zf-HC5HC2H: PHD-like 69.7 1.8 3.8E-05 39.4 0.5 32 647-686 37-70 (90)
136 KOG4628 Predicted E3 ubiquitin 66.4 4.7 0.0001 46.3 3.1 47 547-605 230-278 (348)
137 COG5628 Predicted acetyltransf 66.1 23 0.0005 35.3 7.2 71 808-883 41-118 (143)
138 cd04265 DUF619-NAGS-U DUF619 d 62.5 15 0.00032 35.2 5.1 44 815-858 20-64 (99)
139 TIGR03019 pepcterm_femAB FemAB 61.5 18 0.00038 40.7 6.5 80 807-887 198-280 (330)
140 PF15446 zf-PHD-like: PHD/FYVE 57.4 5.9 0.00013 41.2 1.6 34 649-685 2-35 (175)
141 KOG1734 Predicted RING-contain 56.2 2.8 6E-05 46.4 -1.0 56 544-604 222-280 (328)
142 COG3818 Predicted acetyltransf 53.3 35 0.00077 34.5 6.2 56 836-891 92-151 (167)
143 PHA02929 N1R/p28-like protein; 52.1 5.7 0.00012 43.5 0.6 54 545-604 173-226 (238)
144 PF04377 ATE_C: Arginine-tRNA- 50.1 73 0.0016 31.8 7.9 63 803-866 38-100 (128)
145 PRK00756 acyltransferase NodA; 48.0 29 0.00063 36.3 4.8 40 827-867 84-123 (196)
146 KOG4135 Predicted phosphogluco 47.3 40 0.00087 34.8 5.6 58 828-886 107-168 (185)
147 PF13880 Acetyltransf_13: ESCO 47.0 14 0.00031 33.3 2.2 27 831-857 8-34 (70)
148 PRK14852 hypothetical protein; 46.7 52 0.0011 42.8 7.8 84 805-888 76-181 (989)
149 KOG2752 Uncharacterized conser 46.6 17 0.00038 41.1 3.2 101 566-685 64-167 (345)
150 PF13901 DUF4206: Domain of un 46.2 19 0.0004 38.4 3.3 47 543-602 149-197 (202)
151 COG5194 APC11 Component of SCF 46.0 6.1 0.00013 36.5 -0.3 56 547-604 21-80 (88)
152 KOG1493 Anaphase-promoting com 45.3 3.3 7.1E-05 37.9 -2.1 59 546-605 20-81 (84)
153 PLN02400 cellulose synthase 44.3 29 0.00063 45.3 5.1 58 543-606 33-90 (1085)
154 PF14569 zf-UDP: Zinc-binding 43.5 5.1 0.00011 36.7 -1.1 57 543-605 6-62 (80)
155 PF13444 Acetyltransf_5: Acety 43.1 49 0.0011 31.0 5.2 24 826-849 76-99 (101)
156 KOG1701 Focal adhesion adaptor 42.3 4.6 9.9E-05 47.2 -2.0 36 548-603 276-311 (468)
157 PF10497 zf-4CXXC_R1: Zinc-fin 41.7 12 0.00026 36.1 0.9 49 544-602 5-69 (105)
158 PF01853 MOZ_SAS: MOZ/SAS fami 41.4 87 0.0019 33.4 7.2 85 761-861 25-113 (188)
159 cd00162 RING RING-finger (Real 40.8 8.4 0.00018 29.2 -0.2 31 570-602 12-43 (45)
160 PF13832 zf-HC5HC2H_2: PHD-zin 40.4 15 0.00032 34.8 1.4 31 545-586 54-86 (110)
161 PF01233 NMT: Myristoyl-CoA:pr 39.2 2.4E+02 0.0052 29.6 9.8 112 744-866 22-148 (162)
162 PLN02638 cellulose synthase A 38.0 21 0.00045 46.5 2.5 58 543-606 14-71 (1079)
163 KOG1428 Inhibitor of type V ad 37.5 5.6 0.00012 52.1 -2.4 32 575-606 3506-3545(3738)
164 PF02591 DUF164: Putative zinc 37.4 12 0.00027 31.6 0.3 34 545-578 21-54 (56)
165 PLN02436 cellulose synthase A 37.3 24 0.00052 45.9 2.9 58 543-606 33-90 (1094)
166 KOG1246 DNA-binding protein ju 36.8 25 0.00053 45.4 2.9 48 648-707 157-204 (904)
167 PF12261 T_hemolysin: Thermost 36.2 67 0.0015 33.9 5.5 63 827-894 86-150 (179)
168 PF11793 FANCL_C: FANCL C-term 36.2 18 0.0004 32.2 1.2 34 648-684 4-39 (70)
169 KOG0804 Cytoplasmic Zn-finger 35.7 16 0.00034 43.2 0.9 46 545-602 174-219 (493)
170 KOG1298 Squalene monooxygenase 33.7 33 0.00071 40.4 2.9 186 21-246 97-319 (509)
171 PF05502 Dynactin_p62: Dynacti 33.7 40 0.00088 40.6 3.9 33 568-603 3-35 (483)
172 PLN02189 cellulose synthase 33.3 30 0.00065 45.0 2.8 57 544-606 32-88 (1040)
173 PF04958 AstA: Arginine N-succ 33.1 62 0.0013 37.4 5.0 77 758-852 30-145 (342)
174 KOG2779 N-myristoyl transferas 32.3 1.5E+02 0.0033 34.6 7.8 133 745-888 80-241 (421)
175 PLN03238 probable histone acet 32.3 89 0.0019 35.4 5.9 31 831-861 158-188 (290)
176 PRK01305 arginyl-tRNA-protein 32.2 2.2E+02 0.0047 31.5 8.8 59 807-866 147-205 (240)
177 TIGR03244 arg_catab_AstA argin 30.6 90 0.002 36.1 5.7 50 803-852 54-141 (336)
178 TIGR03245 arg_AOST_alph argini 30.2 86 0.0019 36.2 5.5 50 803-852 55-142 (336)
179 TIGR03243 arg_catab_AOST argin 29.8 90 0.002 36.1 5.6 50 803-852 54-141 (335)
180 PRK10456 arginine succinyltran 29.1 89 0.0019 36.2 5.4 50 803-852 56-143 (344)
181 TIGR02174 CXXU_selWTH selT/sel 28.9 38 0.00082 30.2 2.0 29 40-69 39-67 (72)
182 PLN00104 MYST -like histone ac 28.7 52 0.0011 39.3 3.5 30 831-860 309-338 (450)
183 PF10367 Vps39_2: Vacuolar sor 28.4 42 0.00091 31.0 2.3 32 544-585 76-107 (109)
184 KOG0827 Predicted E3 ubiquitin 28.0 13 0.00028 43.2 -1.4 47 547-603 5-54 (465)
185 KOG3581 Creatine kinases [Ener 27.9 41 0.00088 38.1 2.3 43 765-807 77-126 (363)
186 KOG1246 DNA-binding protein ju 27.8 43 0.00093 43.3 2.9 50 544-603 153-204 (904)
187 PLN02915 cellulose synthase A 27.8 41 0.00089 43.8 2.7 56 545-606 14-69 (1044)
188 KOG3612 PHD Zn-finger protein 27.5 40 0.00087 40.8 2.4 46 556-602 59-107 (588)
189 KOG2747 Histone acetyltransfer 27.4 52 0.0011 38.7 3.2 25 831-855 263-287 (396)
190 KOG1081 Transcription factor N 27.2 19 0.00042 43.0 -0.2 65 647-728 90-163 (463)
191 COG5540 RING-finger-containing 26.1 25 0.00054 39.8 0.3 50 543-603 320-370 (374)
192 KOG1472 Histone acetyltransfer 26.0 18 0.00039 45.2 -0.8 95 796-891 410-508 (720)
193 PF14545 DBB: Dof, BCAP, and B 25.4 2.1E+02 0.0045 29.4 6.7 63 801-896 64-126 (142)
194 PRK13361 molybdenum cofactor b 24.8 1.7E+02 0.0037 33.1 6.7 68 254-335 242-310 (329)
195 KOG1632 Uncharacterized PHD Zn 24.8 41 0.00088 38.9 1.8 44 666-713 74-119 (345)
196 COG3916 LasI N-acyl-L-homoseri 24.8 3.6E+02 0.0077 29.4 8.5 82 801-883 50-158 (209)
197 PF10262 Rdx: Rdx family; Int 24.5 21 0.00046 31.9 -0.4 27 41-68 42-68 (76)
198 KOG1829 Uncharacterized conser 23.9 26 0.00057 43.0 0.0 36 545-586 339-374 (580)
199 PF07227 DUF1423: Protein of u 22.7 58 0.0013 38.8 2.5 43 560-602 136-191 (446)
200 COG0143 MetG Methionyl-tRNA sy 22.7 77 0.0017 39.0 3.6 30 647-684 143-172 (558)
201 PF03107 C1_2: C1 domain; Int 22.3 79 0.0017 23.6 2.3 28 548-585 2-30 (30)
202 KOG4628 Predicted E3 ubiquitin 22.2 41 0.00088 38.9 1.1 45 648-706 231-275 (348)
203 KOG1081 Transcription factor N 22.0 57 0.0012 39.2 2.3 46 544-602 87-132 (463)
204 PF10497 zf-4CXXC_R1: Zinc-fin 21.9 30 0.00064 33.4 -0.0 51 648-706 9-69 (105)
205 PHA02926 zinc finger-like prot 21.9 38 0.00083 37.0 0.8 60 543-605 167-230 (242)
206 KOG1829 Uncharacterized conser 21.8 32 0.00069 42.2 0.2 51 543-602 508-558 (580)
207 PLN02195 cellulose synthase A 21.8 66 0.0014 41.8 2.9 56 544-605 4-59 (977)
208 KOG1642 Ribonuclease, T2 famil 21.7 43 0.00092 37.2 1.1 59 275-333 116-189 (263)
209 PF13901 DUF4206: Domain of un 21.6 70 0.0015 34.1 2.7 34 649-683 155-188 (202)
210 PTZ00064 histone acetyltransfe 21.5 1.3E+02 0.0028 36.6 5.0 32 830-861 386-417 (552)
211 PF07649 C1_3: C1-like domain; 21.1 34 0.00074 25.4 0.2 28 649-682 3-30 (30)
212 PF13771 zf-HC5HC2H: PHD-like 21.1 55 0.0012 29.7 1.5 32 544-586 34-67 (90)
213 PF08746 zf-RING-like: RING-li 20.6 35 0.00076 27.8 0.1 39 549-600 1-43 (43)
214 KOG0317 Predicted E3 ubiquitin 20.1 28 0.00062 39.1 -0.7 52 542-607 235-286 (293)
No 1
>KOG1244 consensus Predicted transcription factor Requiem/NEURO-D4 [Transcription]
Probab=98.99 E-value=7.2e-11 Score=125.24 Aligned_cols=103 Identities=27% Similarity=0.731 Sum_probs=80.8
Q ss_pred cCCccccccccccCCcCcc-cccCCCCcEEeccCCCCccccccCCC-----CCcCCCCcccccccccccccccccccccc
Q 002320 543 NGLGIICHCCNSEVSPSQF-EAHADGGNLLPCDGCPRAFHKECASL-----SSIPQGDWYCKYCQNMFERKRFLQHDANA 616 (936)
Q Consensus 543 ~~~~i~C~~C~~evSpS~F-E~hadgG~Ll~CD~Cp~afH~~CL~L-----~~vP~g~W~Cp~C~~~~~~e~~v~~n~~a 616 (936)
.-...+|..|... |.- ....-..+|+.|..|+++-|..||.. ..|....|.|..|+.
T Consensus 221 a~Pn~YCDFclgd---sr~nkkt~~peelvscsdcgrsghpsclqft~nm~~avk~yrwqcieck~-------------- 283 (336)
T KOG1244|consen 221 AQPNPYCDFCLGD---SRENKKTGMPEELVSCSDCGRSGHPSCLQFTANMIAAVKTYRWQCIECKY-------------- 283 (336)
T ss_pred ccCCcccceeccc---cccccccCCchhhcchhhcCCCCCcchhhhhHHHHHHHHhheeeeeecce--------------
Confidence 3455678888741 000 00113568999999999999999973 345677899999973
Q ss_pred cccccccccCchhhccchheeecccccccCCccccccCCCCCCCCCCCCceeeCCCcCcccCCCccccCcCCcccCCCCC
Q 002320 617 VEAGRVSGVDSVEQITKRCIRIVKNLEAELSGCLLCRGCDFSKSGFGPRTILLCDQCEREFHVGCLKKHKMADLRELPKG 696 (936)
Q Consensus 617 ia~Gr~~Gvd~ieqi~~rciR~vkd~e~e~~~C~iC~~~d~s~sg~~~g~LI~CDqC~rayHv~CL~p~~l~~L~evPeg 696 (936)
|.+|+-++ +++.|++||-|++.||++||.| +|.+.|+|
T Consensus 284 --------------------------------csicgtse------nddqllfcddcdrgyhmyclsp----pm~eppeg 321 (336)
T KOG1244|consen 284 --------------------------------CSICGTSE------NDDQLLFCDDCDRGYHMYCLSP----PMVEPPEG 321 (336)
T ss_pred --------------------------------eccccCcC------CCceeEeecccCCceeeEecCC----CcCCCCCC
Confidence 99999764 6789999999999999999998 78899999
Q ss_pred cceecCCch
Q 002320 697 KWFCCMDCS 705 (936)
Q Consensus 697 ~WfC~~~C~ 705 (936)
.|-| .-|-
T Consensus 322 swsc-~KOG 329 (336)
T KOG1244|consen 322 SWSC-HLCL 329 (336)
T ss_pred chhH-HHHH
Confidence 9999 6674
No 2
>KOG0956 consensus PHD finger protein AF10 [General function prediction only]
Probab=98.95 E-value=4.8e-10 Score=130.34 Aligned_cols=142 Identities=23% Similarity=0.503 Sum_probs=89.7
Q ss_pred CCcEEeccC--CCCccccccCCCCCcCCCCccccccccc-----------ccccccccccccc----------ccccccc
Q 002320 567 GGNLLPCDG--CPRAFHKECASLSSIPQGDWYCKYCQNM-----------FERKRFLQHDANA----------VEAGRVS 623 (936)
Q Consensus 567 gG~Ll~CD~--Cp~afH~~CL~L~~vP~g~W~Cp~C~~~-----------~~~e~~v~~n~~a----------ia~Gr~~ 623 (936)
...|+.||+ |.-+.|+.|+++.+||.|.|||+.|... .++.+.+.+..|. +..-+|.
T Consensus 19 eNPLVYCDG~nCsVAVHQaCYGIvqVPtGpWfCrKCesqeraarvrCeLCP~kdGALKkTDn~GWAHVVCALYIPEVrFg 98 (900)
T KOG0956|consen 19 ENPLVYCDGHNCSVAVHQACYGIVQVPTGPWFCRKCESQERAARVRCELCPHKDGALKKTDNGGWAHVVCALYIPEVRFG 98 (900)
T ss_pred cCceeeecCCCceeeeehhcceeEecCCCchhhhhhhhhhhhccceeecccCcccceecccCCCceEEEEEeeccceeec
Confidence 458999995 9999999999999999999999999653 1122233222221 1122233
Q ss_pred ccCchhhccchheeecccccccCCccccccCCCCCCCCCCCCceeeCC--CcCcccCCCccccCcCCcccCC--CCCcce
Q 002320 624 GVDSVEQITKRCIRIVKNLEAELSGCLLCRGCDFSKSGFGPRTILLCD--QCEREFHVGCLKKHKMADLREL--PKGKWF 699 (936)
Q Consensus 624 Gvd~ieqi~~rciR~vkd~e~e~~~C~iC~~~d~s~sg~~~g~LI~CD--qC~rayHv~CL~p~~l~~L~ev--Peg~Wf 699 (936)
.|...|.|.-..+.+ +.-+..||||.+-+- ......|..|.|. .|.++||+.|.+..++-.-++. -+---|
T Consensus 99 NV~TMEPIiLq~VP~----dRfnKtCYIC~E~Gr-pnkA~~GACMtCNKs~CkqaFHVTCAQ~~GLLCEE~gn~~dNVKY 173 (900)
T KOG0956|consen 99 NVHTMEPIILQDVPH----DRFNKTCYICNEEGR-PNKAAKGACMTCNKSGCKQAFHVTCAQRAGLLCEEEGNISDNVKY 173 (900)
T ss_pred ccccccceeeccCch----hhhcceeeeecccCC-ccccccccceecccccchhhhhhhHhhhhccceecccccccccee
Confidence 333444332211111 223356999997531 1223456789997 6999999999998765433321 112247
Q ss_pred ecCCchhhHHHHHhh
Q 002320 700 CCMDCSRINSVLQNL 714 (936)
Q Consensus 700 C~~~C~~I~~kLqkL 714 (936)
| ..|+..+.+|.+-
T Consensus 174 C-GYCk~HfsKlkk~ 187 (900)
T KOG0956|consen 174 C-GYCKYHFSKLKKS 187 (900)
T ss_pred c-hhHHHHHHHhhcC
Confidence 8 8999999999764
No 3
>PRK10314 putative acyltransferase; Provisional
Probab=98.94 E-value=3.5e-09 Score=105.58 Aligned_cols=115 Identities=15% Similarity=0.103 Sum_probs=86.9
Q ss_pred HHHHHHHHHhhcCCCcccCCcCCCcchhhhccCCCCccc--CCcEEEEEEeCCeEEEEEEEEEecc--ceeEeeeeeecc
Q 002320 763 LLSQAVAIFHDCFDPIVDSISGRDLIPSMVYGNLRGQEF--GGMYCAILTVNSSVVSAGILRVFGQ--EVAELPLVATSK 838 (936)
Q Consensus 763 ~La~Al~If~EcFdPiid~rSgrDLIp~MVy~~~~r~df--~GfY~~VL~~~~~vVsaA~lri~g~--~~AEIp~vAT~~ 838 (936)
.+..|+.+=++-|-.= -+.+. .++...|. ..++ +++..++++||+|++...+. ..++|.+|||++
T Consensus 16 ~~~~~~~lR~~VF~~e----q~~~~------~e~D~~d~~~~~~h-~~~~~~~~~vg~~r~~~~~~~~~~~~i~rv~V~~ 84 (153)
T PRK10314 16 QLYALLQLRCAVFVVE----QNCPY------QDIDGDDLTGDNRH-ILGWKNDELVAYARILKSDDDLEPVVIGRVIVSE 84 (153)
T ss_pred HHHHHHHHHHHHhhhh----cCCCc------cccCCCCCCCCcEE-EEEEECCEEEEEEEEecCCCCCCCEEEEEEEECH
Confidence 4678888888888321 11111 11222233 2233 45567899999999987543 368999999999
Q ss_pred CCcCCChhHHHHHHHHHHhhhc-CceEEEecchhhHHHHhHhccCcEEcCHH
Q 002320 839 INHGKGYFQLLFACIEKLLSFL-RVKSIVLPAAEEAESIWTDKFGFKKIDPE 889 (936)
Q Consensus 839 ~~RgqG~gr~L~~~IE~~L~~l-gV~~LvlpA~~ea~~~w~~kfGF~~i~~~ 889 (936)
+|||+|+|+.||..+++.++.. +...++|.|...|++||.+ |||..+++.
T Consensus 85 ~~rG~GiG~~Lm~~~~~~~~~~~~~~~i~L~a~~~a~~fY~k-~GF~~~g~~ 135 (153)
T PRK10314 85 ALRGEKVGQQLMSKTLESCTRHWPDKPVYLGAQAHLQNFYQS-FGFIPVTEV 135 (153)
T ss_pred HHhCCCHHHHHHHHHHHHHHHHCCCCcEEEehHHHHHHHHHH-CCCEECCCc
Confidence 9999999999999999988775 7889999999999999999 999999873
No 4
>COG1246 ArgA N-acetylglutamate synthase and related acetyltransferases [Amino acid transport and metabolism]
Probab=98.89 E-value=2.8e-09 Score=106.59 Aligned_cols=90 Identities=19% Similarity=0.275 Sum_probs=77.9
Q ss_pred ccCCcEEEEEEeCCeEEEEEEEE-EeccceeEeeeeeeccCCcCCChhHHHHHHHHHHhhhcCceEEEecchhhHHHHhH
Q 002320 800 EFGGMYCAILTVNSSVVSAGILR-VFGQEVAELPLVATSKINHGKGYFQLLFACIEKLLSFLRVKSIVLPAAEEAESIWT 878 (936)
Q Consensus 800 df~GfY~~VL~~~~~vVsaA~lr-i~g~~~AEIp~vAT~~~~RgqG~gr~L~~~IE~~L~~lgV~~LvlpA~~ea~~~w~ 878 (936)
++..|+ +++.+|.+||||.++ +.+.+++||.-+||+|+||++|+|..|+..|+..++.+|++++++.+. . .+-|.
T Consensus 38 ~i~dF~--i~E~~g~viGC~aL~~~~~~~~gE~~~laV~pd~r~~G~G~~Ll~~~~~~Ar~~gi~~lf~LTt-~-~~~~F 113 (153)
T COG1246 38 EIDDFT--IIERDGKVIGCAALHPVLEEDLGELRSLAVHPDYRGSGRGERLLERLLADARELGIKELFVLTT-R-SPEFF 113 (153)
T ss_pred HHhhhe--eeeeCCcEEEEEeecccCccCeeeEEEEEECHHhcCCCcHHHHHHHHHHHHHHcCCceeeeeec-c-cHHHH
Confidence 445566 558899999999999 788999999999999999999999999999999999999999999984 2 45566
Q ss_pred hccCcEEcCHHHHHH
Q 002320 879 DKFGFKKIDPELLSI 893 (936)
Q Consensus 879 ~kfGF~~i~~~~~~~ 893 (936)
.++||+.++.+++..
T Consensus 114 ~~~GF~~vd~~~LP~ 128 (153)
T COG1246 114 AERGFTRVDKDELPE 128 (153)
T ss_pred HHcCCeECccccCCH
Confidence 669999999966543
No 5
>PF13508 Acetyltransf_7: Acetyltransferase (GNAT) domain; PDB: 3EY5_A 3FRM_B 3D8P_B 3GY9_A 3GYA_A 3S6F_A 2Q7B_A 1CM0_B 1XEB_B 1Y7R_A ....
Probab=98.88 E-value=1.4e-08 Score=89.22 Aligned_cols=76 Identities=18% Similarity=0.156 Sum_probs=66.1
Q ss_pred EEEEEEeCCeEEEEEEEEEeccceeEeeeeeeccCCcCCChhHHHHHHHHHHhhhcCceEEEecchhhHHHHhHhccCcE
Q 002320 805 YCAILTVNSSVVSAGILRVFGQEVAELPLVATSKINHGKGYFQLLFACIEKLLSFLRVKSIVLPAAEEAESIWTDKFGFK 884 (936)
Q Consensus 805 Y~~VL~~~~~vVsaA~lri~g~~~AEIp~vAT~~~~RgqG~gr~L~~~IE~~L~~lgV~~LvlpA~~ea~~~w~~kfGF~ 884 (936)
+.++++.++++||++.+...+ +.+.|..++|+|+|||+|+|+.||..+.+.+.. ..+++.+.+.+.+||++ +||+
T Consensus 4 ~~~~~~~~~~ivG~~~~~~~~-~~~~i~~~~v~~~~rg~Gig~~ll~~~~~~~~~---~~i~l~~~~~~~~fY~~-~GF~ 78 (79)
T PF13508_consen 4 RFFVAEDDGEIVGFIRLWPNE-DFAYIGYLAVDPEYRGKGIGSKLLNYLLEKAKS---KKIFLFTNPAAIKFYEK-LGFE 78 (79)
T ss_dssp EEEEEEETTEEEEEEEEEETT-TEEEEEEEEE-GGGTTSSHHHHHHHHHHHHHTC---SEEEEEEEHHHHHHHHH-TTEE
T ss_pred EEEEEEECCEEEEEEEEEEcC-CEEEEEEEEECHHHcCCCHHHHHHHHHHHHcCC---CcEEEEEcHHHHHHHHH-CcCC
Confidence 457889999999999996655 599999999999999999999999999888844 56678888999999999 9998
Q ss_pred E
Q 002320 885 K 885 (936)
Q Consensus 885 ~ 885 (936)
+
T Consensus 79 ~ 79 (79)
T PF13508_consen 79 E 79 (79)
T ss_dssp E
T ss_pred C
Confidence 5
No 6
>PF00583 Acetyltransf_1: Acetyltransferase (GNAT) family; InterPro: IPR000182 The N-acetyltransferases (NAT) (EC 2.3.1.-) are enzymes that use acetyl coenzyme A (CoA) to transfer an acetyl group to a substrate, a reaction implicated in various functions from bacterial antibiotic resistance to mammalian circadian rhythm and chromatin remodeling. The Gcn5-related N-acetyltransferases (GNAT) catalyze the transfer of the acetyl from the CoA donor to a primary amine of the acceptor. The GNAT proteins share a domain composed of four conserved sequence motifs A-D [, ]. This GNAT domain is named after yeast GCN5 (from General Control Nonrepressed) and related histone acetyltransferases (HATs) like Hat1 and PCAF. HATs acetylate lysine residues of amino terminal histone tails, resulting in transcription activation. Another category of GNAT, the aminoglycoside N-acetyltransferases, confer antibiotic resistance by catalyzing the acetylation of amino groups in aminoglycoside antibiotics []. GNAT proteins can also have anabolic and catabolic functions in both prokaryotes and eukaryotes [, , , , ]. The acetyltransferase/GNAT domain forms a structurally conserved fold of 6 to 7 beta strands (B) and 4 helices (H) in the topology B1-H1-H2-B2-B3-B4-H3-B5-H4-B6, followed by a C-terminal strand which may be from the same monomer or contributed by another [, ]. Motifs D (B2-B3), A (B4-H3) and B (B5-H4) are collectively called the HAT core [, , ], while the N-terminal motif C (B1-H1) is less conserved. Some proteins known to contain a GNAT domain: Yeast GCN5 and Hat1, which are histone acetyltransferases (EC 2.3.1.48). Human PCAF, a histone acetyltransferase. Mammalian serotonin N-acetyltransferase (SNAT) or arylalkylamine NAT (AANAT), which acetylates serotonin into a circadian neurohormone that may participate in light-dark rhythms, and human mood and behavior. Mammalian glucosamine 6-phosphate N-acetyltransferase (GNA1) (EC 2.3.1.4). Escherichia coli rimI and rimJ, which acetylate the N-terminal alanine of ribosomal proteins S18 and S5, respectively (EC 2.3.1.128). Mycobacterium tuberculosis aminoglycoside 2'-N-acetyltransferase (aac), which acetylates the 2' hydroxyl or amino group of a broad spectrum of aminoglycoside antibiotics. Bacillus subtilis bltD and paiA, which acetylate spermine and spermidine. This entry represents the entire GNAT domain.; GO: 0008080 N-acetyltransferase activity, 0008152 metabolic process; PDB: 3T9Y_A 2R7H_B 2OZH_A 1Y9W_B 1VKC_B 2OH1_C 3R9E_B 3R9G_B 3R9F_A 3R96_A ....
Probab=98.83 E-value=1.9e-08 Score=87.52 Aligned_cols=74 Identities=20% Similarity=0.238 Sum_probs=67.3
Q ss_pred EeCCeEEEEEEEEEecc-----ceeEeeeeeeccCCcCCChhHHHHHHHHHHhhhcCceEEEecchh---hHHHHhHhcc
Q 002320 810 TVNSSVVSAGILRVFGQ-----EVAELPLVATSKINHGKGYFQLLFACIEKLLSFLRVKSIVLPAAE---EAESIWTDKF 881 (936)
Q Consensus 810 ~~~~~vVsaA~lri~g~-----~~AEIp~vAT~~~~RgqG~gr~L~~~IE~~L~~lgV~~LvlpA~~---ea~~~w~~kf 881 (936)
+.+++|||++.+++... ..+.|..++|+++|||+|+|+.|++.+++.++..|+..+.+.... .+..||.+ +
T Consensus 2 ~~~~~ivg~~~~~~~~~~~~~~~~~~i~~~~v~~~~r~~Gig~~L~~~~~~~~~~~g~~~i~~~~~~~n~~~~~~~~k-~ 80 (83)
T PF00583_consen 2 EEDGQIVGFASLRPPPEPFDHGNHAYIHRLAVDPEYRGQGIGSKLLQAAEEWARKRGIKRIYLDVSPDNPAARRFYEK-L 80 (83)
T ss_dssp EETTEEEEEEEEEEEETTTTTTTEEEEEEEEECGGGTTSSHHHHHHHHHHHHHHHTTESEEEEEEETTGHHHHHHHHH-T
T ss_pred cCCCEEEEEEEEEECCCccccCCEEEEEEEEEcHHHhhCCCchhhhhhhhhhHHhcCccEEEEEEeCCCHHHHHHHHH-c
Confidence 68999999999999886 599999999999999999999999999999999999998887655 45699998 9
Q ss_pred CcE
Q 002320 882 GFK 884 (936)
Q Consensus 882 GF~ 884 (936)
||+
T Consensus 81 Gf~ 83 (83)
T PF00583_consen 81 GFE 83 (83)
T ss_dssp TEE
T ss_pred CCC
Confidence 996
No 7
>KOG1512 consensus PHD Zn-finger protein [General function prediction only]
Probab=98.78 E-value=1.7e-09 Score=115.57 Aligned_cols=81 Identities=31% Similarity=0.784 Sum_probs=68.3
Q ss_pred CCcEEeccCCCCccccccCCCC-----CcCCCCcccccccccccccccccccccccccccccccCchhhccchheeeccc
Q 002320 567 GGNLLPCDGCPRAFHKECASLS-----SIPQGDWYCKYCQNMFERKRFLQHDANAVEAGRVSGVDSVEQITKRCIRIVKN 641 (936)
Q Consensus 567 gG~Ll~CD~Cp~afH~~CL~L~-----~vP~g~W~Cp~C~~~~~~e~~v~~n~~aia~Gr~~Gvd~ieqi~~rciR~vkd 641 (936)
...+++|..|..++|..|+.+. .+....|.|..|+-
T Consensus 276 ~~S~I~C~~C~~~~HP~Ci~M~~elv~~~KTY~W~C~~C~l--------------------------------------- 316 (381)
T KOG1512|consen 276 RNSWIVCKPCATRPHPYCVAMIPELVGQYKTYFWKCSSCEL--------------------------------------- 316 (381)
T ss_pred hccceeecccccCCCCcchhcCHHHHhHHhhcchhhcccHh---------------------------------------
Confidence 4689999999999999999742 34557899999972
Q ss_pred ccccCCccccccCCCCCCCCCCCCceeeCCCcCcccCCCccccCcCCcccCCCCCcceecCCch
Q 002320 642 LEAELSGCLLCRGCDFSKSGFGPRTILLCDQCEREFHVGCLKKHKMADLRELPKGKWFCCMDCS 705 (936)
Q Consensus 642 ~e~e~~~C~iC~~~d~s~sg~~~g~LI~CDqC~rayHv~CL~p~~l~~L~evPeg~WfC~~~C~ 705 (936)
|.+|++.. .+..+++||.|++.||..|+ .|..+|.|.|.|-..|.
T Consensus 317 -------C~IC~~P~------~E~E~~FCD~CDRG~HT~CV------GL~~lP~G~WICD~~C~ 361 (381)
T KOG1512|consen 317 -------CRICLGPV------IESEHLFCDVCDRGPHTLCV------GLQDLPRGEWICDMRCR 361 (381)
T ss_pred -------hhccCCcc------cchheeccccccCCCCcccc------ccccccCccchhhhHHH
Confidence 99999863 57789999999999999999 57899999999955574
No 8
>PF13673 Acetyltransf_10: Acetyltransferase (GNAT) domain; PDB: 2FIW_A 1BOB_A 3FNC_B 3EXN_A.
Probab=98.75 E-value=4.9e-08 Score=90.17 Aligned_cols=74 Identities=18% Similarity=0.227 Sum_probs=65.0
Q ss_pred cEEEEEEeCCeEEEEEEEEEeccceeEeeeeeeccCCcCCChhHHHHHHHHHHhhhcCceEEEecchhhHHHHhHhccCc
Q 002320 804 MYCAILTVNSSVVSAGILRVFGQEVAELPLVATSKINHGKGYFQLLFACIEKLLSFLRVKSIVLPAAEEAESIWTDKFGF 883 (936)
Q Consensus 804 fY~~VL~~~~~vVsaA~lri~g~~~AEIp~vAT~~~~RgqG~gr~L~~~IE~~L~~lgV~~LvlpA~~ea~~~w~~kfGF 883 (936)
...+|++.++++||.+.++ .-++|..+.|+|+|||+|+|++|++.+++.++. |++.+.+.+...|.+||++ +||
T Consensus 44 ~~~~v~~~~~~ivG~~~~~----~~~~i~~l~v~p~~r~~Gig~~Ll~~~~~~~~~-~~~~l~~~~~~~a~~~y~~-~GF 117 (117)
T PF13673_consen 44 HTIFVAEEGGEIVGFAWLE----PDGEISHLYVLPEYRGRGIGRALLDAAEKEAKD-GIRRLTVEANERARRFYRK-LGF 117 (117)
T ss_dssp CEEEEEEETTEEEEEEEEE----TCEEEEEEEE-GGGTTSSHHHHHHHHHHHHHTT-TCEEEEEEC-HHHHHHHHH-TT-
T ss_pred CEEEEEEECCEEEEEEEEc----CCCeEEEEEEChhhcCCcHHHHHHHHHHHHHHc-CCcEEEEEeCHHHHHHHHh-CCC
Confidence 4557889999999999986 345599999999999999999999999999988 9999999999999999999 998
No 9
>PF15446 zf-PHD-like: PHD/FYVE-zinc-finger like domain
Probab=98.67 E-value=1.9e-08 Score=101.33 Aligned_cols=133 Identities=19% Similarity=0.378 Sum_probs=83.6
Q ss_pred ccccccccCCcCcccccCCCCcEEeccCCCCccccccCCC--------CCcCCCC--ccccccccccccccccccccccc
Q 002320 548 ICHCCNSEVSPSQFEAHADGGNLLPCDGCPRAFHKECASL--------SSIPQGD--WYCKYCQNMFERKRFLQHDANAV 617 (936)
Q Consensus 548 ~C~~C~~evSpS~FE~hadgG~Ll~CD~Cp~afH~~CL~L--------~~vP~g~--W~Cp~C~~~~~~e~~v~~n~~ai 617 (936)
.|..|......+ ..|.|+.|.+|..+||..||+. +.|..+. ..|..|....++++..++.....
T Consensus 1 ~C~~C~~~g~~~------~kG~Lv~CQGCs~sYHk~CLG~Rs~ReHlVTKVg~d~FVLQCr~Cig~~~kKD~~aP~~~~C 74 (175)
T PF15446_consen 1 TCDTCGYEGDDR------NKGPLVYCQGCSSSYHKACLGPRSQREHLVTKVGDDDFVLQCRRCIGIAHKKDPRAPHHGMC 74 (175)
T ss_pred CcccccCCCCCc------cCCCeEEcCccChHHHhhhcCCccccceeeEEEcCCceEEechhhcChhhcccCCCCCCCcc
Confidence 377786432222 4789999999999999999973 3444444 67999987777777777766655
Q ss_pred ccccccccCchhhccchheeecccccccCCccccccCCCCCCCCCCCCceeeCCCcCcccCCCccccCc
Q 002320 618 EAGRVSGVDSVEQITKRCIRIVKNLEAELSGCLLCRGCDFSKSGFGPRTILLCDQCEREFHVGCLKKHK 686 (936)
Q Consensus 618 a~Gr~~Gvd~ieqi~~rciR~vkd~e~e~~~C~iC~~~d~s~sg~~~g~LI~CDqC~rayHv~CL~p~~ 686 (936)
......|....+-......+..+....++++=......+....+..++.|+.|..|.++||+..|++.+
T Consensus 75 ~~C~~~G~~c~pfr~r~T~kQEe~~ReeNgG~DPit~Vd~~lvnN~~nVLFRC~~C~RawH~~HLP~~~ 143 (175)
T PF15446_consen 75 QQCKKPGPSCKPFRPRKTPKQEEKLREENGGVDPITPVDPELVNNPDNVLFRCTSCHRAWHFEHLPPPS 143 (175)
T ss_pred cccCCCCCCCcccCCCCCcHHHHHHHHHcCCCCCCccCCHHHccChhheEEecCCccceeehhhCCCCc
Confidence 555555544333222222233333333333333333333333344577889999999999999998853
No 10
>PTZ00330 acetyltransferase; Provisional
Probab=98.61 E-value=2e-07 Score=89.63 Aligned_cols=83 Identities=14% Similarity=0.207 Sum_probs=72.1
Q ss_pred EEEEEEeCCeEEEEEEEEEec------cceeEeeeeeeccCCcCCChhHHHHHHHHHHhhhcCceEEEecchhhHHHHhH
Q 002320 805 YCAILTVNSSVVSAGILRVFG------QEVAELPLVATSKINHGKGYFQLLFACIEKLLSFLRVKSIVLPAAEEAESIWT 878 (936)
Q Consensus 805 Y~~VL~~~~~vVsaA~lri~g------~~~AEIp~vAT~~~~RgqG~gr~L~~~IE~~L~~lgV~~LvlpA~~ea~~~w~ 878 (936)
+.++...++++||.+.+.+.. ...++|-.+.+.|+|||+|+|+.|+..+++.+...|+..+++.+...|..||+
T Consensus 53 ~~~~~~~~~~~vG~~~~~~~~~~~~~~~~~~~i~~~~V~~~~rg~Gig~~l~~~~~~~a~~~~~~~l~l~~n~~a~~~y~ 132 (147)
T PTZ00330 53 RVFVHSPTQRIVGTASLFVEPKFTRGGKCVGHIEDVVVDPSYRGQGLGRALISDLCEIARSSGCYKVILDCTEDMVAFYK 132 (147)
T ss_pred EEEEEeCCCEEEEEEEEEeccccccCCCceEEEEEEEECHHHcCCCHHHHHHHHHHHHHHHCCCCEEEEecChHHHHHHH
Confidence 345556789999999886532 23578889999999999999999999999999999999999999999999999
Q ss_pred hccCcEEcCH
Q 002320 879 DKFGFKKIDP 888 (936)
Q Consensus 879 ~kfGF~~i~~ 888 (936)
+ +||.....
T Consensus 133 k-~GF~~~~~ 141 (147)
T PTZ00330 133 K-LGFRACER 141 (147)
T ss_pred H-CCCEEece
Confidence 9 99998764
No 11
>KOG4323 consensus Polycomb-like PHD Zn-finger protein [General function prediction only]
Probab=98.60 E-value=3.9e-08 Score=112.70 Aligned_cols=209 Identities=18% Similarity=0.253 Sum_probs=129.1
Q ss_pred CCccccccccccCCcCcccccCCCCcEEeccCCCCccccccCCCCCcCCCCccccccccccccccccccccccccccccc
Q 002320 544 GLGIICHCCNSEVSPSQFEAHADGGNLLPCDGCPRAFHKECASLSSIPQGDWYCKYCQNMFERKRFLQHDANAVEAGRVS 623 (936)
Q Consensus 544 ~~~i~C~~C~~evSpS~FE~hadgG~Ll~CD~Cp~afH~~CL~L~~vP~g~W~Cp~C~~~~~~e~~v~~n~~aia~Gr~~ 623 (936)
.....|.+|..+... .+.++..|+.|.++||+.|.-......+.|.+..|..........+. ..|+..
T Consensus 81 ~~e~~~nv~~s~~~~-------p~~e~~~~~r~~~~~~q~~~i~~~~~~~~~~~~~c~~~~~~~~g~a~-----K~g~~a 148 (464)
T KOG4323|consen 81 SSELNPNVLTSETVL-------PENEKVICGRCKSGYHQGCNIPRFPSLDIGESTECVFPIFSQEGGAL-----KKGRLA 148 (464)
T ss_pred ccccCCccccccccc-------CchhhhhhhhhccCcccccCccCcCcCCccccccccccccccccccc-----cccccc
Confidence 455678888854322 35678999999999999998544444567888888765321111110 011111
Q ss_pred c-cCchh--hccchheeecccccccCCccccccCCCCCCCCCCCCceeeCCCcCcccCCCccccCcCCcccCCCCCccee
Q 002320 624 G-VDSVE--QITKRCIRIVKNLEAELSGCLLCRGCDFSKSGFGPRTILLCDQCEREFHVGCLKKHKMADLRELPKGKWFC 700 (936)
Q Consensus 624 G-vd~ie--qi~~rciR~vkd~e~e~~~C~iC~~~d~s~sg~~~g~LI~CDqC~rayHv~CL~p~~l~~L~evPeg~WfC 700 (936)
+ +-.++ ...+.. ....+. .|.+|...... ..+.||+|+.|..+||..|.++.....+..-|...|||
T Consensus 149 ~~~l~y~~~~l~wD~-----~~~~n~-qc~vC~~g~~~----~~NrmlqC~~C~~~fHq~Chqp~i~~~l~~D~~~~w~C 218 (464)
T KOG4323|consen 149 RPSLPYPEASLDWDS-----GHKVNL-QCSVCYCGGPG----AGNRMLQCDKCRQWYHQACHQPLIKDELAGDPFYEWFC 218 (464)
T ss_pred cccccCcccccccCc-----cccccc-eeeeeecCCcC----ccceeeeecccccHHHHHhccCCCCHhhccCccceEee
Confidence 1 00000 000000 001112 29888865322 34589999999999999999986555555557889999
Q ss_pred cCCchhhHHHHHhhhhcccccCchhhh--hhhh--hcccCccccccccCceEEEcc-CCCCC---hhhHHHHHHHHHHHh
Q 002320 701 CMDCSRINSVLQNLLVQEAEKLPEFHL--NAIK--KYAGNSLETVSDIDVRWRLLS-GKAAT---PETRLLLSQAVAIFH 772 (936)
Q Consensus 701 ~~~C~~I~~kLqkLl~~~~e~lp~sll--~~Ik--k~~e~gle~~~~~di~W~lLs-gk~~s---~e~~~~La~Al~If~ 772 (936)
..|..-..++..+-..|++.++..+. ..+. ++..+-+++.-...-.|..|. |...+ .+....+..|++-..
T Consensus 219 -~~C~~~~~~~~r~t~~~~dv~~lal~~~~~~~~~k~~~~~~ei~~f~e~~~~slp~~e~~tsp~~~~~~~~lsal~~~~ 297 (464)
T KOG4323|consen 219 -DVCNRGPKKVPRLTLRWADVLHLALYNLKPMLKKKYFKSLVEILLFCEESWPSLPFYEPKTSPVTERSSSLLSALSSYK 297 (464)
T ss_pred -hhhccchhhccccccccccccchhhhhhhhhhccCCcccHHHHHHHHhhccccccccCCccccccchhhHHHHhhhccc
Confidence 89999889998888888887754443 2333 445555455445566777764 44444 245667778887777
Q ss_pred hcC
Q 002320 773 DCF 775 (936)
Q Consensus 773 EcF 775 (936)
..|
T Consensus 298 ~~f 300 (464)
T KOG4323|consen 298 SRF 300 (464)
T ss_pred ccc
Confidence 666
No 12
>PRK10146 aminoalkylphosphonic acid N-acetyltransferase; Provisional
Probab=98.56 E-value=2.4e-07 Score=88.84 Aligned_cols=80 Identities=14% Similarity=0.091 Sum_probs=68.7
Q ss_pred EEEEeCCeEEEEEEEEEec-----cceeEeeeeeeccCCcCCChhHHHHHHHHHHhhhcCceEEEecch---hhHHHHhH
Q 002320 807 AILTVNSSVVSAGILRVFG-----QEVAELPLVATSKINHGKGYFQLLFACIEKLLSFLRVKSIVLPAA---EEAESIWT 878 (936)
Q Consensus 807 ~VL~~~~~vVsaA~lri~g-----~~~AEIp~vAT~~~~RgqG~gr~L~~~IE~~L~~lgV~~LvlpA~---~ea~~~w~ 878 (936)
+|++.++++||.+.+.... ...++|..++|+|+|||+|+|+.||..+++.++..|+..+.|.+. ..|+.||+
T Consensus 50 ~v~~~~~~ivG~~~~~~~~~~~~~~~~~~i~~l~v~p~~rg~GiG~~Ll~~~~~~a~~~~~~~i~l~~~~~n~~a~~fY~ 129 (144)
T PRK10146 50 HLALLDGEVVGMIGLHLQFHLHHVNWIGEIQELVVMPQARGLNVGSKLLAWAEEEARQAGAEMTELSTNVKRHDAHRFYL 129 (144)
T ss_pred EEEEECCEEEEEEEEEecccccccchhheeheeEECHHHcCCCHHHHHHHHHHHHHHHcCCcEEEEecCCCchHHHHHHH
Confidence 4567889999999987632 225789899999999999999999999999999999999988765 48999999
Q ss_pred hccCcEEcC
Q 002320 879 DKFGFKKID 887 (936)
Q Consensus 879 ~kfGF~~i~ 887 (936)
+ +||....
T Consensus 130 ~-~Gf~~~~ 137 (144)
T PRK10146 130 R-EGYEQSH 137 (144)
T ss_pred H-cCCchhh
Confidence 9 9997653
No 13
>PLN02706 glucosamine 6-phosphate N-acetyltransferase
Probab=98.54 E-value=3.8e-07 Score=88.71 Aligned_cols=82 Identities=13% Similarity=0.272 Sum_probs=69.1
Q ss_pred EEEEEEe--CCeEEEEEEEEEec------cceeEeeeeeeccCCcCCChhHHHHHHHHHHhhhcCceEEEecchhhHHHH
Q 002320 805 YCAILTV--NSSVVSAGILRVFG------QEVAELPLVATSKINHGKGYFQLLFACIEKLLSFLRVKSIVLPAAEEAESI 876 (936)
Q Consensus 805 Y~~VL~~--~~~vVsaA~lri~g------~~~AEIp~vAT~~~~RgqG~gr~L~~~IE~~L~~lgV~~LvlpA~~ea~~~ 876 (936)
|.++++. ++++||.+.+.+.. ..++.|.-+++.++|||+|+|+.|+..+++.+..+|++++++........|
T Consensus 54 ~~~~~~~~~~~~ivG~~~~~~~~~~~~~~~~~~~i~~i~V~~~~rg~GiG~~ll~~~~~~a~~~g~~~i~l~~~~~N~~~ 133 (150)
T PLN02706 54 LICVIEDAASGRIIATGSVFVERKFIRNCGKVGHIEDVVVDSAARGKGLGKKIIEALTEHARSAGCYKVILDCSEENKAF 133 (150)
T ss_pred EEEEEEeCCCCcEEEEEEEEEEeecccCCCcEEEEEEEEECHHHcCCCHHHHHHHHHHHHHHHcCCCEEEEEeccccHHH
Confidence 3344454 68999999885432 356677789999999999999999999999999999999999988888899
Q ss_pred hHhccCcEEcC
Q 002320 877 WTDKFGFKKID 887 (936)
Q Consensus 877 w~~kfGF~~i~ 887 (936)
|.+ +||...+
T Consensus 134 y~k-~GF~~~g 143 (150)
T PLN02706 134 YEK-CGYVRKE 143 (150)
T ss_pred HHH-CcCEEeh
Confidence 998 9999764
No 14
>PF13527 Acetyltransf_9: Acetyltransferase (GNAT) domain; PDB: 3SXN_C 2I00_D 1M4D_B 1M44_A 1M4G_B 1M4I_A 2OZG_A 2HV2_F 3N7Z_A 3RYO_B ....
Probab=98.54 E-value=4.3e-07 Score=85.57 Aligned_cols=111 Identities=19% Similarity=0.224 Sum_probs=80.0
Q ss_pred HHHHHHHHhhcCCCcccCCcCCCcchhhhccCCCCcccCCcEEEEEEeCCeEEEEEEEEEe-----cc--ceeEeeeeee
Q 002320 764 LSQAVAIFHDCFDPIVDSISGRDLIPSMVYGNLRGQEFGGMYCAILTVNSSVVSAGILRVF-----GQ--EVAELPLVAT 836 (936)
Q Consensus 764 La~Al~If~EcFdPiid~rSgrDLIp~MVy~~~~r~df~GfY~~VL~~~~~vVsaA~lri~-----g~--~~AEIp~vAT 836 (936)
+.+..+++.++|.+-.... ..+.+. ..-+..-++++.+.+++|||.+.+... |. .++-|--|||
T Consensus 10 ~~~i~~l~~~~F~~~~~~~------~~~~~~---~~~~~~~~~~~~~~~~~ivg~~~~~~~~~~~~g~~~~~~~i~~v~v 80 (127)
T PF13527_consen 10 FEQIIELFNEAFGDSESPP------EIWEYF---RNLYGPGRCVVAEDDGKIVGHVGLIPRRLSVGGKKFKAAYIGDVAV 80 (127)
T ss_dssp HHHHHHHHHHHTTT-CHHH------HHHHHH---HHHHHTTEEEEEEETTEEEEEEEEEEEEEEETTEEEEEEEEEEEEE
T ss_pred HHHHHHHHHHHCCCCCCch------hhhhhh---hcccCcCcEEEEEECCEEEEEEEEEEEEEEECCEEEEEEEEEEEEE
Confidence 4677788889995433221 122222 111112356778889999998877554 33 5899999999
Q ss_pred ccCCcCCChhHHHHHHHHHHhhhcCceEEEecchhhHHHHhHhccCcEEc
Q 002320 837 SKINHGKGYFQLLFACIEKLLSFLRVKSIVLPAAEEAESIWTDKFGFKKI 886 (936)
Q Consensus 837 ~~~~RgqG~gr~L~~~IE~~L~~lgV~~LvlpA~~ea~~~w~~kfGF~~i 886 (936)
.|+|||+|+++.||..+++.++..|+.-+++-+ ...++|.+ |||+.+
T Consensus 81 ~p~~R~~Gl~~~L~~~~~~~~~~~g~~~~~l~~--~~~~~Y~~-~G~~~~ 127 (127)
T PF13527_consen 81 DPEYRGRGLGRQLMRALLERARERGVPFIFLFP--SSPPFYRR-FGFEYA 127 (127)
T ss_dssp -GGGTTSSHHHHHHHHHHHHHHHTT-SEEEEE---SSHHHHHH-TTEEEE
T ss_pred CHHHcCCCHHHHHHHHHHHHHHhCCCCEEEEec--CChhhhhc-CCCEEC
Confidence 999999999999999999999999999999877 34789988 999864
No 15
>PRK07922 N-acetylglutamate synthase; Validated
Probab=98.51 E-value=3.9e-07 Score=92.20 Aligned_cols=79 Identities=20% Similarity=0.323 Sum_probs=70.9
Q ss_pred EEEE-eCCeEEEEEEEEEeccceeEeeeeeeccCCcCCChhHHHHHHHHHHhhhcCceEEEecchhhHHHHhHhccCcEE
Q 002320 807 AILT-VNSSVVSAGILRVFGQEVAELPLVATSKINHGKGYFQLLFACIEKLLSFLRVKSIVLPAAEEAESIWTDKFGFKK 885 (936)
Q Consensus 807 ~VL~-~~~~vVsaA~lri~g~~~AEIp~vAT~~~~RgqG~gr~L~~~IE~~L~~lgV~~LvlpA~~ea~~~w~~kfGF~~ 885 (936)
++++ .++++||.+.+.+...+.++|..++++++|||+|+|+.||+.+++.++..|+.++++... +..||++ +||..
T Consensus 48 ~va~~~~~~iiG~~~~~~~~~~~~~i~~l~V~p~~rgkGiG~~Ll~~~~~~a~~~g~~~l~~~~~--~~~fY~k-~GF~~ 124 (169)
T PRK07922 48 WVAEHLDGEVVGCGALHVMWEDLAEIRTVAVDPAARGRGVGHAIVERLLDVARELGLSRVFVLTF--EVEFFAR-HGFVE 124 (169)
T ss_pred EEEEecCCcEEEEEEEeecCCCceEEEEEEECHHHhCCCHHHHHHHHHHHHHHHcCCCEEEEEec--cHHHHHH-CCCEE
Confidence 4666 889999999988877789999999999999999999999999999999999999987654 4789999 99999
Q ss_pred cCH
Q 002320 886 IDP 888 (936)
Q Consensus 886 i~~ 888 (936)
++.
T Consensus 125 ~~~ 127 (169)
T PRK07922 125 IDG 127 (169)
T ss_pred Ccc
Confidence 875
No 16
>KOG0954 consensus PHD finger protein [General function prediction only]
Probab=98.50 E-value=5.4e-08 Score=114.58 Aligned_cols=153 Identities=22% Similarity=0.475 Sum_probs=95.8
Q ss_pred ccccCCccccccccccCCcCcccccCCCCcEEeccCCCCccccccCCCCCcCCCCccccccccccccc--------cccc
Q 002320 540 GYKNGLGIICHCCNSEVSPSQFEAHADGGNLLPCDGCPRAFHKECASLSSIPQGDWYCKYCQNMFERK--------RFLQ 611 (936)
Q Consensus 540 G~~~~~~i~C~~C~~evSpS~FE~hadgG~Ll~CD~Cp~afH~~CL~L~~vP~g~W~Cp~C~~~~~~e--------~~v~ 611 (936)
|+...+..+|.+|....+. ++.+|++||.|....|+.|+++..+|+|.|.|..|.-..++. +.+.
T Consensus 265 gie~dedviCDvCrspD~e-------~~neMVfCd~Cn~cVHqaCyGIle~p~gpWlCr~Calg~~ppCvLCPkkGGamK 337 (893)
T KOG0954|consen 265 GIEYDEDVICDVCRSPDSE-------EANEMVFCDKCNICVHQACYGILEVPEGPWLCRTCALGIEPPCVLCPKKGGAMK 337 (893)
T ss_pred eeeccccceeceecCCCcc-------ccceeEEeccchhHHHHhhhceeecCCCCeeehhccccCCCCeeeccccCCccc
Confidence 3445588899999964432 578999999999999999999999999999999997654332 2222
Q ss_pred ccccccccccccccCchhhccchheeecccc--------cccCCccccccCCCCCCCCCCCCceeeCC--CcCcccCCCc
Q 002320 612 HDANAVEAGRVSGVDSVEQITKRCIRIVKNL--------EAELSGCLLCRGCDFSKSGFGPRTILLCD--QCEREFHVGC 681 (936)
Q Consensus 612 ~n~~aia~Gr~~Gvd~ieqi~~rciR~vkd~--------e~e~~~C~iC~~~d~s~sg~~~g~LI~CD--qC~rayHv~C 681 (936)
+.......-.+.-.-|++++...|......+ +.....|.+|+. ..|..|+|. .|..+||+.|
T Consensus 338 ~~~sgT~wAHvsCALwIPEVsie~~ekmePItkfs~IpesRwslvC~LCk~--------k~GACIqCs~k~C~t~fHv~C 409 (893)
T KOG0954|consen 338 PTKSGTKWAHVSCALWIPEVSIECPEKMEPITKFSHIPESRWSLVCNLCKV--------KSGACIQCSNKTCRTAFHVTC 409 (893)
T ss_pred ccCCCCeeeEeeeeeccceeeccCHhhcCcccccCCCcHHHHHHHHHHhcc--------cCcceEEecccchhhhccchh
Confidence 2111111111111224444443332211111 122345999996 357889997 7999999999
Q ss_pred cccCcCCcc---cCCC--CCcceecCCchhhH
Q 002320 682 LKKHKMADL---RELP--KGKWFCCMDCSRIN 708 (936)
Q Consensus 682 L~p~~l~~L---~evP--eg~WfC~~~C~~I~ 708 (936)
...+|+..- .+.. ...-|| ..|..+.
T Consensus 410 A~~aG~~~~~~~~~~D~v~~~s~c-~khs~~~ 440 (893)
T KOG0954|consen 410 AFEAGLEMKTILKENDEVKFKSYC-SKHSDHR 440 (893)
T ss_pred hhhcCCeeeeeeccCCchhheeec-ccccccc
Confidence 999875321 1111 234578 5665554
No 17
>PLN02825 amino-acid N-acetyltransferase
Probab=98.49 E-value=5.2e-07 Score=106.19 Aligned_cols=89 Identities=21% Similarity=0.291 Sum_probs=78.0
Q ss_pred EEEEeCCeEEEEEEEEEec-cceeEeeeeeeccCCcCCChhHHHHHHHHHHhhhcCceEEEecchhhHHHHhHhccCcEE
Q 002320 807 AILTVNSSVVSAGILRVFG-QEVAELPLVATSKINHGKGYFQLLFACIEKLLSFLRVKSIVLPAAEEAESIWTDKFGFKK 885 (936)
Q Consensus 807 ~VL~~~~~vVsaA~lri~g-~~~AEIp~vAT~~~~RgqG~gr~L~~~IE~~L~~lgV~~LvlpA~~ea~~~w~~kfGF~~ 885 (936)
+|++.++++||++.+..+. .+.+||-.+||+|+|||+|+|+.||+.+|+.++..|+++|++.+ ..+..||.+ +||..
T Consensus 410 ~V~e~Dg~IVG~aal~~~~~~~~aEI~~laV~P~yRGkGiG~~LL~~le~~Ar~~G~~~L~Llt-t~a~~fY~k-~GF~~ 487 (515)
T PLN02825 410 VVVEREGSIIACAALFPFFEEKCGEVAAIAVSPECRGQGQGDKLLDYIEKKAASLGLEKLFLLT-TRTADWFVR-RGFSE 487 (515)
T ss_pred EEEEECCEEEEEEEEEeecCCCcEEEEEEEECHHHcCCCHHHHHHHHHHHHHHHCCCCEEEEEe-CcHHHHHHH-CCCEE
Confidence 4678999999999987765 46899999999999999999999999999999999999999876 467888888 99999
Q ss_pred cCHHHHHHHHhc
Q 002320 886 IDPELLSIYRKR 897 (936)
Q Consensus 886 i~~~~~~~~~~~ 897 (936)
.+.+++..-++.
T Consensus 488 ~~~~~lp~~~~~ 499 (515)
T PLN02825 488 CSIESLPEARRK 499 (515)
T ss_pred eChhhCCHHHHh
Confidence 999777666554
No 18
>cd02169 Citrate_lyase_ligase Citrate lyase ligase. Citrate lyase ligase, also known as [Citrate (pro-3S)-lyase] ligase, is responsible for acetylation of the (2-(5''-phosphoribosyl)-3'-dephosphocoenzyme-A) prosthetic group of the gamma subunit of citrate lyase, converting the inactive thiol form of this enzyme to the active form. The acetylation of 1 molecule of deacetyl-citrate lyase to enzymatically active citrate lyase requires 6 molecules of ATP. The Adenylylyltranferase activity of the enzyme involves the formation of AMP and and pyrophosphate in the acetylation reaction.
Probab=98.49 E-value=3.7e-07 Score=100.96 Aligned_cols=74 Identities=15% Similarity=0.201 Sum_probs=67.7
Q ss_pred EEEeCCeEEEEEEEEEeccceeEeeeeeeccCCcCCChhHHHHHHHHHHhhhcCceEEEecchhhHHHHhHhccCcEEcC
Q 002320 808 ILTVNSSVVSAGILRVFGQEVAELPLVATSKINHGKGYFQLLFACIEKLLSFLRVKSIVLPAAEEAESIWTDKFGFKKID 887 (936)
Q Consensus 808 VL~~~~~vVsaA~lri~g~~~AEIp~vAT~~~~RgqG~gr~L~~~IE~~L~~lgV~~LvlpA~~ea~~~w~~kfGF~~i~ 887 (936)
+...++++||+|.+.. .+|..+||+|+|||+|+|+.||+.+++.++..|+..++|.+...+..||.+ +||..++
T Consensus 10 v~~~~~~iVG~~~l~~-----~~I~~vaV~p~~Rg~GiG~~Ll~~l~~~a~~~g~~~i~L~t~~~~~~fYek-~GF~~~~ 83 (297)
T cd02169 10 IFDDAGELIATGSIAG-----NVLKCVAVCPKYQGEGLALKIVSELINKAYEEGIFHLFLFTKPKNAKFFRG-LGFKELA 83 (297)
T ss_pred EEEECCEEEEEEEecc-----CEEEEEEECHHHcCCCHHHHHHHHHHHHHHHCCCCEEEEEEcccHHHHHHH-CCCEEec
Confidence 3456799999998852 469999999999999999999999999999999999999999999999998 9999998
No 19
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=98.49 E-value=3.9e-08 Score=115.89 Aligned_cols=52 Identities=40% Similarity=0.932 Sum_probs=45.8
Q ss_pred ccCCccccccCCCCCCCCCCCCceeeCCCcCcc-cCCCccccCcCCcccCCCCCcceecCCchh
Q 002320 644 AELSGCLLCRGCDFSKSGFGPRTILLCDQCERE-FHVGCLKKHKMADLRELPKGKWFCCMDCSR 706 (936)
Q Consensus 644 ~e~~~C~iC~~~d~s~sg~~~g~LI~CDqC~ra-yHv~CL~p~~l~~L~evPeg~WfC~~~C~~ 706 (936)
.+...|.+|..+| .+..||+||.|... ||++||+| +|.++|-+.||| .+|.-
T Consensus 213 ~E~~~C~IC~~~D------pEdVLLLCDsCN~~~YH~YCLDP----dl~eiP~~eWYC-~NC~d 265 (1134)
T KOG0825|consen 213 QEEVKCDICTVHD------PEDVLLLCDSCNKVYYHVYCLDP----DLSESPVNEWYC-TNCSL 265 (1134)
T ss_pred cccccceeeccCC------hHHhheeecccccceeeccccCc----ccccccccceec-Ccchh
Confidence 3456799999886 57789999999998 99999998 899999999999 89973
No 20
>PRK07757 acetyltransferase; Provisional
Probab=98.48 E-value=6.2e-07 Score=87.42 Aligned_cols=82 Identities=21% Similarity=0.312 Sum_probs=71.8
Q ss_pred EEEEeCCeEEEEEEEEEeccceeEeeeeeeccCCcCCChhHHHHHHHHHHhhhcCceEEEecchhhHHHHhHhccCcEEc
Q 002320 807 AILTVNSSVVSAGILRVFGQEVAELPLVATSKINHGKGYFQLLFACIEKLLSFLRVKSIVLPAAEEAESIWTDKFGFKKI 886 (936)
Q Consensus 807 ~VL~~~~~vVsaA~lri~g~~~AEIp~vAT~~~~RgqG~gr~L~~~IE~~L~~lgV~~LvlpA~~ea~~~w~~kfGF~~i 886 (936)
+++..++++||.+.+.+.+.+.++|-.++|.|+|||+|+|+.|+..+++.+...|+.++++-.. +..||.+ +||+.+
T Consensus 44 ~i~~~~~~lvG~~~l~~~~~~~~~i~~v~V~p~~rg~Glg~~Ll~~l~~~a~~~g~~~i~~~~~--~~~~Y~k-~GF~~~ 120 (152)
T PRK07757 44 YVAEEEGEIVGCCALHILWEDLAEIRSLAVSEDYRGQGIGRMLVEACLEEARELGVKRVFALTY--QPEFFEK-LGFREV 120 (152)
T ss_pred EEEEECCEEEEEEEEEeccCCceEEEEEEECHHHcCCCHHHHHHHHHHHHHHhCCCCeEEEEeC--cHHHHHH-CCCEEc
Confidence 3456789999999999988889999999999999999999999999999999999999875443 5689999 999999
Q ss_pred CHHHH
Q 002320 887 DPELL 891 (936)
Q Consensus 887 ~~~~~ 891 (936)
+..++
T Consensus 121 ~~~~~ 125 (152)
T PRK07757 121 DKEAL 125 (152)
T ss_pred ccccC
Confidence 87443
No 21
>COG5141 PHD zinc finger-containing protein [General function prediction only]
Probab=98.48 E-value=4e-08 Score=111.26 Aligned_cols=131 Identities=24% Similarity=0.527 Sum_probs=79.6
Q ss_pred CCccccccccccCCcCcccccCCCCcEEeccCCCCccccccCCCCCcCCCCccccccccccccccccccccccccccccc
Q 002320 544 GLGIICHCCNSEVSPSQFEAHADGGNLLPCDGCPRAFHKECASLSSIPQGDWYCKYCQNMFERKRFLQHDANAVEAGRVS 623 (936)
Q Consensus 544 ~~~i~C~~C~~evSpS~FE~hadgG~Ll~CD~Cp~afH~~CL~L~~vP~g~W~Cp~C~~~~~~e~~v~~n~~aia~Gr~~ 623 (936)
.-++.|.+|....+. ...-+++||+|..+.|+.|+++.-+|+|.|+|..|...-+...+ ........|.+.
T Consensus 191 ~~d~~C~~c~~t~~e-------N~naiVfCdgC~i~VHq~CYGI~f~peG~WlCrkCi~~~~~i~~--C~fCps~dGaFk 261 (669)
T COG5141 191 EFDDICTKCTSTHNE-------NSNAIVFCDGCEICVHQSCYGIQFLPEGFWLCRKCIYGEYQIRC--CSFCPSSDGAFK 261 (669)
T ss_pred hhhhhhHhccccccC-------CcceEEEecCcchhhhhhcccceecCcchhhhhhhcccccceeE--EEeccCCCCcee
Confidence 346778888853221 35688999999999999999999999999999999643211100 000011122221
Q ss_pred ccC-----------chhhcc------chheeeccc--ccccCCccccccCCCCCCCCCCCCceeeCC--CcCcccCCCcc
Q 002320 624 GVD-----------SVEQIT------KRCIRIVKN--LEAELSGCLLCRGCDFSKSGFGPRTILLCD--QCEREFHVGCL 682 (936)
Q Consensus 624 Gvd-----------~ieqi~------~rciR~vkd--~e~e~~~C~iC~~~d~s~sg~~~g~LI~CD--qC~rayHv~CL 682 (936)
..+ .++++. ..-++.++. ...+..+|.+|+. .+|+.|+|. .|-++||+.|.
T Consensus 262 qT~dgrW~H~iCA~~~pelsF~~l~~~dpI~~i~sVs~srwkl~C~iCk~--------~~GtcIqCs~~nC~~aYHVtCA 333 (669)
T COG5141 262 QTSDGRWGHVICAMFNPELSFGHLLSKDPIDNIASVSSSRWKLGCLICKE--------FGGTCIQCSYFNCTRAYHVTCA 333 (669)
T ss_pred eccCCchHhHhHHHhcchhccccccccchhhhhcccchhhHhheeeEEcc--------cCcceeeecccchhhhhhhhhh
Confidence 111 111110 000011111 1123346999997 478999998 59999999999
Q ss_pred ccCcCCccc
Q 002320 683 KKHKMADLR 691 (936)
Q Consensus 683 ~p~~l~~L~ 691 (936)
+..+.-++.
T Consensus 334 rrag~f~~~ 342 (669)
T COG5141 334 RRAGYFDLN 342 (669)
T ss_pred hhcchhhhh
Confidence 987755553
No 22
>KOG4299 consensus PHD Zn-finger protein [General function prediction only]
Probab=98.45 E-value=8.7e-08 Score=112.08 Aligned_cols=59 Identities=32% Similarity=0.841 Sum_probs=44.5
Q ss_pred eeccccccCCc--cccccccccCCcCcccccCCCCcEEeccCCCCccccccCC----CCCcCCCCccccccccc
Q 002320 536 KLLEGYKNGLG--IICHCCNSEVSPSQFEAHADGGNLLPCDGCPRAFHKECAS----LSSIPQGDWYCKYCQNM 603 (936)
Q Consensus 536 ~ll~G~~~~~~--i~C~~C~~evSpS~FE~hadgG~Ll~CD~Cp~afH~~CL~----L~~vP~g~W~Cp~C~~~ 603 (936)
...++++.-.. ++|..|++.. .| .+++|||+||++||+.||+ ...+|.|.|+|+.|...
T Consensus 241 ~~~D~~~~~~~~~~fCsaCn~~~---~F------~~~i~CD~Cp~sFH~~CLePPl~~eniP~g~W~C~ec~~k 305 (613)
T KOG4299|consen 241 RERDKNISVEDIEDFCSACNGSG---LF------NDIICCDGCPRSFHQTCLEPPLEPENIPPGSWFCPECKIK 305 (613)
T ss_pred hhhccccccCCHHHHHHHhCCcc---cc------ccceeecCCchHHHHhhcCCCCCcccCCCCccccCCCeee
Confidence 34445554444 4999999521 11 3569999999999999997 45899999999999765
No 23
>PRK03624 putative acetyltransferase; Provisional
Probab=98.44 E-value=6.4e-07 Score=84.24 Aligned_cols=82 Identities=20% Similarity=0.167 Sum_probs=68.4
Q ss_pred EEEEEEeCCeEEEEEEEEEeccceeEeeeeeeccCCcCCChhHHHHHHHHHHhhhcCceEEEecch---hhHHHHhHhcc
Q 002320 805 YCAILTVNSSVVSAGILRVFGQEVAELPLVATSKINHGKGYFQLLFACIEKLLSFLRVKSIVLPAA---EEAESIWTDKF 881 (936)
Q Consensus 805 Y~~VL~~~~~vVsaA~lri~g~~~AEIp~vAT~~~~RgqG~gr~L~~~IE~~L~~lgV~~LvlpA~---~ea~~~w~~kf 881 (936)
+.+++..++++||.+.+...+ +.+.+..++++|+|||+|+|+.|+..+++.+...|++++.+.+. ..+..+|.+ +
T Consensus 46 ~~~v~~~~~~~vG~~~~~~~~-~~~~i~~i~v~p~~rg~Gig~~ll~~~~~~~~~~~~~~~~~~~~~~N~~~~~~y~k-~ 123 (140)
T PRK03624 46 LFLVAEVGGEVVGTVMGGYDG-HRGWAYYLAVHPDFRGRGIGRALVARLEKKLIARGCPKINLQVREDNDAVLGFYEA-L 123 (140)
T ss_pred eEEEEEcCCcEEEEEEeeccC-CCceEEEEEECHHHhCCCHHHHHHHHHHHHHHHCCCCEEEEEEecCcHHHHHHHHH-c
Confidence 335667889999998876533 45678889999999999999999999999999999999877654 458899988 9
Q ss_pred CcEEcCH
Q 002320 882 GFKKIDP 888 (936)
Q Consensus 882 GF~~i~~ 888 (936)
||+..+.
T Consensus 124 GF~~~~~ 130 (140)
T PRK03624 124 GYEEQDR 130 (140)
T ss_pred CCccccE
Confidence 9997654
No 24
>TIGR01575 rimI ribosomal-protein-alanine acetyltransferase. Members of this model belong to the GCN5-related N-acetyltransferase (GNAT) superfamily. This model covers prokarotes and the archaea. The seed contains a characterized accession for Gram negative E. coli. An untraceable characterized accession (PIR|S66013) for Gram positive B. subtilis scores well (205.0) in the full alignment. Characterized members are lacking in the archaea. Noise cutoff (72.4) was set to exclude M. loti paralog of rimI. Trusted cutoff (80.0) was set at next highest scoring member in the mini-database.
Probab=98.44 E-value=1.5e-06 Score=81.02 Aligned_cols=80 Identities=18% Similarity=0.212 Sum_probs=68.4
Q ss_pred EEEEeCCeEEEEEEEEEeccceeEeeeeeeccCCcCCChhHHHHHHHHHHhhhcCceEEEe---cchhhHHHHhHhccCc
Q 002320 807 AILTVNSSVVSAGILRVFGQEVAELPLVATSKINHGKGYFQLLFACIEKLLSFLRVKSIVL---PAAEEAESIWTDKFGF 883 (936)
Q Consensus 807 ~VL~~~~~vVsaA~lri~g~~~AEIp~vAT~~~~RgqG~gr~L~~~IE~~L~~lgV~~Lvl---pA~~ea~~~w~~kfGF 883 (936)
++.+.++++||.+.+.... +...+-.++|.++|||||+|+.|+.++++.+...|+..+++ +....+..||++ +||
T Consensus 34 ~~~~~~~~~vg~~~~~~~~-~~~~i~~~~v~~~~rg~G~g~~ll~~~~~~~~~~~~~~i~~~~~~~n~~~~~~y~~-~Gf 111 (131)
T TIGR01575 34 LLARIGGKVVGYAGVQIVL-DEAHILNIAVKPEYQGQGIGRALLRELIDEAKGRGVNEIFLEVRVSNIAAQALYKK-LGF 111 (131)
T ss_pred EEEecCCeEEEEEEEEecC-CCeEEEEEEECHHHcCCCHHHHHHHHHHHHHHHcCCCeEEEEEecccHHHHHHHHH-cCC
Confidence 4556789999999987643 45778889999999999999999999999999999999988 455668899999 999
Q ss_pred EEcCH
Q 002320 884 KKIDP 888 (936)
Q Consensus 884 ~~i~~ 888 (936)
+.++.
T Consensus 112 ~~~~~ 116 (131)
T TIGR01575 112 NEIAI 116 (131)
T ss_pred Ccccc
Confidence 98765
No 25
>KOG4299 consensus PHD Zn-finger protein [General function prediction only]
Probab=98.42 E-value=1.2e-07 Score=110.79 Aligned_cols=49 Identities=39% Similarity=0.999 Sum_probs=41.5
Q ss_pred ccccccCCCCCCCCCCCCceeeCCCcCcccCCCccccCcCCcccCCCCCcceecCCch
Q 002320 648 GCLLCRGCDFSKSGFGPRTILLCDQCEREFHVGCLKKHKMADLRELPKGKWFCCMDCS 705 (936)
Q Consensus 648 ~C~iC~~~d~s~sg~~~g~LI~CDqC~rayHv~CL~p~~l~~L~evPeg~WfC~~~C~ 705 (936)
+|..|++.+ .| ..+|+||.|++.||+.||.|+. ..+.+|.|.||| +.|.
T Consensus 255 fCsaCn~~~----~F--~~~i~CD~Cp~sFH~~CLePPl--~~eniP~g~W~C-~ec~ 303 (613)
T KOG4299|consen 255 FCSACNGSG----LF--NDIICCDGCPRSFHQTCLEPPL--EPENIPPGSWFC-PECK 303 (613)
T ss_pred HHHHhCCcc----cc--ccceeecCCchHHHHhhcCCCC--CcccCCCCcccc-CCCe
Confidence 799999754 33 6789999999999999999842 367899999999 8897
No 26
>COG2153 ElaA Predicted acyltransferase [General function prediction only]
Probab=98.42 E-value=8.1e-07 Score=88.12 Aligned_cols=83 Identities=23% Similarity=0.222 Sum_probs=71.0
Q ss_pred EEEEeCCeEEEEEEEEEeccceeE--eeeeeeccCCcCCChhHHHHHHHHHHhhhcC-ceEEEecchhhHHHHhHhccCc
Q 002320 807 AILTVNSSVVSAGILRVFGQEVAE--LPLVATSKINHGKGYFQLLFACIEKLLSFLR-VKSIVLPAAEEAESIWTDKFGF 883 (936)
Q Consensus 807 ~VL~~~~~vVsaA~lri~g~~~AE--Ip~vAT~~~~RgqG~gr~L~~~IE~~L~~lg-V~~LvlpA~~ea~~~w~~kfGF 883 (936)
++...+|++|+.|+|-.-+....+ |.+|+|.+++||+|+|+.||....+.+.... =+.+.|.|+..++.||.. |||
T Consensus 53 ~~~~~~g~LvAyaRLl~~~~~~~~~~iGRV~v~~~~RG~glG~~Lm~~AL~~~~~~~p~~~v~l~AQahLq~fYa~-~GF 131 (155)
T COG2153 53 LGWTPDGELVAYARLLPPGAEYEEVSIGRVIVSPAARGQGLGQQLMEKALETAGREWPDKPVYLGAQAHLQDFYAS-FGF 131 (155)
T ss_pred EEEcCCCeEEEEEecCCCCCCcCceeeeeEEECHhhhccchhHHHHHHHHHHHHhhCCCCCeEEehHHHHHHHHHH-hCc
Confidence 333449999999999887776666 9999999999999999999987776665554 667999999999999999 999
Q ss_pred EEcCHHH
Q 002320 884 KKIDPEL 890 (936)
Q Consensus 884 ~~i~~~~ 890 (936)
.+.+++-
T Consensus 132 v~~~e~y 138 (155)
T COG2153 132 VRVGEEY 138 (155)
T ss_pred EEcCchh
Confidence 9999864
No 27
>KOG0955 consensus PHD finger protein BR140/LIN-49 [General function prediction only]
Probab=98.41 E-value=1.5e-07 Score=116.81 Aligned_cols=129 Identities=23% Similarity=0.546 Sum_probs=82.7
Q ss_pred CCccccccccccCCcCcccccCCCCcEEeccCCCCccccccCCCCCcCCCCccccccccccccccccccccccccccccc
Q 002320 544 GLGIICHCCNSEVSPSQFEAHADGGNLLPCDGCPRAFHKECASLSSIPQGDWYCKYCQNMFERKRFLQHDANAVEAGRVS 623 (936)
Q Consensus 544 ~~~i~C~~C~~evSpS~FE~hadgG~Ll~CD~Cp~afH~~CL~L~~vP~g~W~Cp~C~~~~~~e~~v~~n~~aia~Gr~~ 623 (936)
..+.+|.+|..-.. + ....+++||+|..++|+.|++..-+|+|.|.|..|....++. +.........|.+.
T Consensus 217 ~~D~~C~iC~~~~~--~-----n~n~ivfCD~Cnl~VHq~Cygi~~ipeg~WlCr~Cl~s~~~~--v~c~~cp~~~gAFk 287 (1051)
T KOG0955|consen 217 EEDAVCCICLDGEC--Q-----NSNVIVFCDGCNLAVHQECYGIPFIPEGQWLCRRCLQSPQRP--VRCLLCPSKGGAFK 287 (1051)
T ss_pred CCCccceeeccccc--C-----CCceEEEcCCCcchhhhhccCCCCCCCCcEeehhhccCcCcc--cceEeccCCCCcce
Confidence 57789999995211 1 346899999999999999999999999999999998654332 11111112222222
Q ss_pred ccC-----------chhhcc---------chheeecccccccCCccccccCCCCCCCCCCCCceeeCC--CcCcccCCCc
Q 002320 624 GVD-----------SVEQIT---------KRCIRIVKNLEAELSGCLLCRGCDFSKSGFGPRTILLCD--QCEREFHVGC 681 (936)
Q Consensus 624 Gvd-----------~ieqi~---------~rciR~vkd~e~e~~~C~iC~~~d~s~sg~~~g~LI~CD--qC~rayHv~C 681 (936)
..+ +++++. ...++.... ......|++|+.. +.|..|+|. .|-.+||++|
T Consensus 288 qt~dgrw~Hv~caiwipev~F~nt~~~E~I~~i~~i~~-aRwkL~cy~cK~~-------~~gaciqcs~~~c~~a~hvtc 359 (1051)
T KOG0955|consen 288 QTDDGRWAHVVCAIWIPEVSFANTVFLEPIDSIENIPP-ARWKLTCYICKQK-------GLGACIQCSKANCYTAFHVTC 359 (1051)
T ss_pred eccCCceeeeehhhcccccccccchhhccccchhcCcH-hhhhceeeeeccC-------CCCcceecchhhhhhhhhhhh
Confidence 111 122111 011112111 1233469999974 358899998 6999999999
Q ss_pred cccCcCCc
Q 002320 682 LKKHKMAD 689 (936)
Q Consensus 682 L~p~~l~~ 689 (936)
.+..|+.+
T Consensus 360 a~~agl~m 367 (1051)
T KOG0955|consen 360 ARRAGLYM 367 (1051)
T ss_pred HhhcCceE
Confidence 98877543
No 28
>KOG0383 consensus Predicted helicase [General function prediction only]
Probab=98.40 E-value=1.3e-07 Score=113.46 Aligned_cols=155 Identities=26% Similarity=0.495 Sum_probs=99.6
Q ss_pred CCCCccccccCC--CCCcCCCCcccccccccccccccccccccccccccccccCchhhccchheeecccccccCCccccc
Q 002320 575 GCPRAFHKECAS--LSSIPQGDWYCKYCQNMFERKRFLQHDANAVEAGRVSGVDSVEQITKRCIRIVKNLEAELSGCLLC 652 (936)
Q Consensus 575 ~Cp~afH~~CL~--L~~vP~g~W~Cp~C~~~~~~e~~v~~n~~aia~Gr~~Gvd~ieqi~~rciR~vkd~e~e~~~C~iC 652 (936)
.|+++||..|++ +..-|+++|.||.|...... +...+.. -...+...|.+|
T Consensus 1 ~~~r~~~~~~~~p~~~~~~~~~~k~~~~e~~~~~------------------~~~~~~~---------~~~~~~e~c~ic 53 (696)
T KOG0383|consen 1 TCPRAYHRVCLDPKLKEEPEMDPKCPGCESSSAQ------------------VEAKDDD---------WDDAEQEACRIC 53 (696)
T ss_pred CCCcccCcCCCCcccccCCcCCccCcchhhcccc------------------cccccCC---------cchhhhhhhhhh
Confidence 489999999997 55667899999999742110 0000000 012344679999
Q ss_pred cCCCCCCCCCCCCceeeCCCcCcccCCCccccCcCCcccCCCCCcceecCCchh--hHHHHHhhhhcccccC--c-hhhh
Q 002320 653 RGCDFSKSGFGPRTILLCDQCEREFHVGCLKKHKMADLRELPKGKWFCCMDCSR--INSVLQNLLVQEAEKL--P-EFHL 727 (936)
Q Consensus 653 ~~~d~s~sg~~~g~LI~CDqC~rayHv~CL~p~~l~~L~evPeg~WfC~~~C~~--I~~kLqkLl~~~~e~l--p-~sll 727 (936)
+. .+++|.||.|+.+||..|+.+ ++...|.+.|.| +.|.. -..+.++++.|...+. + ..-.
T Consensus 54 ~~---------~g~~l~c~tC~~s~h~~cl~~----pl~~~p~~~~~c-~Rc~~p~~~~k~~~il~~~~~~~~~~~~~~~ 119 (696)
T KOG0383|consen 54 AD---------GGELLWCDTCPASFHASCLGP----PLTPQPNGEFIC-PRCFCPKNAGKIEKILGWRWKPTPKPREGNQ 119 (696)
T ss_pred cC---------CCcEEEeccccHHHHHHccCC----CCCcCCccceee-eeeccCCCcccccccceeEecCCCCccccCc
Confidence 95 578999999999999999987 678888888999 58842 1224456665543332 2 2222
Q ss_pred hhhhhcccCccccccccCceEEEccCCCCChhhHHHHHHHHHHH
Q 002320 728 NAIKKYAGNSLETVSDIDVRWRLLSGKAATPETRLLLSQAVAIF 771 (936)
Q Consensus 728 ~~Ikk~~e~gle~~~~~di~W~lLsgk~~s~e~~~~La~Al~If 771 (936)
+.+..+...+ .....+.++|+.+++.++.|.-...+......+
T Consensus 120 ~~~~~~~~~~-~~~re~~vk~qg~s~~~c~~~~e~~~q~~~~~~ 162 (696)
T KOG0383|consen 120 GVISPRRSNG-IVEREFFVKWQGLSYWHCSWKSELLLQNPLNTL 162 (696)
T ss_pred CccCCccccc-chhhhcccccccCCccchhHHHHHHhhhhcccc
Confidence 2332111111 234567899999999999886666555444433
No 29
>TIGR01890 N-Ac-Glu-synth amino-acid N-acetyltransferase. This model represents a clade of amino-acid N-acetyltransferases acting mainly on glutamate in the first step of the "acetylated" ornithine biosynthesis pathway. For this reason it is also called N-acetylglutamate synthase. The enzyme may also act on aspartate.
Probab=98.39 E-value=1.2e-06 Score=101.07 Aligned_cols=84 Identities=15% Similarity=0.276 Sum_probs=73.2
Q ss_pred EEEEeCCeEEEEEEEEEec-cceeEeeeeeeccCCcCCChhHHHHHHHHHHhhhcCceEEEecchhhHHHHhHhccCcEE
Q 002320 807 AILTVNSSVVSAGILRVFG-QEVAELPLVATSKINHGKGYFQLLFACIEKLLSFLRVKSIVLPAAEEAESIWTDKFGFKK 885 (936)
Q Consensus 807 ~VL~~~~~vVsaA~lri~g-~~~AEIp~vAT~~~~RgqG~gr~L~~~IE~~L~~lgV~~LvlpA~~ea~~~w~~kfGF~~ 885 (936)
++++.++++||++.+..+. ...++|-.++|+|+|||+|+|+.||+.+++.+...|++.+++.+. .+..||.+ +||..
T Consensus 325 ~V~~~dg~iVG~~~~~~~~~~~~~~I~~l~V~p~~Rg~GiG~~Ll~~l~~~A~~~G~~~l~v~~~-~a~~fY~k-~GF~~ 402 (429)
T TIGR01890 325 SIIEHDGNIIGCAALYPYAEEDCGEMACLAVSPEYQDGGRGERLLAHIEDRARQMGISRLFVLTT-RTGHWFRE-RGFQT 402 (429)
T ss_pred EEEEECCEEEEEEEEEecCCCCeEEEEEEEECHHHcCCCHHHHHHHHHHHHHHHcCCCEEEEeec-chHHHHHH-CCCEE
Confidence 3567899999999998874 468999999999999999999999999999999999999877653 56889988 99999
Q ss_pred cCHHHHH
Q 002320 886 IDPELLS 892 (936)
Q Consensus 886 i~~~~~~ 892 (936)
++..++.
T Consensus 403 ~g~~~l~ 409 (429)
T TIGR01890 403 ASVDELP 409 (429)
T ss_pred CChhhCC
Confidence 9886543
No 30
>TIGR02382 wecD_rffC TDP-D-fucosamine acetyltransferase. This model represents the WecD protein (Formerly RffC) for the biosynthesis of enterobacterial common antigen (ECA), an outer leaflet, outer membrane glycolipid with a trisaccharide repeat unit. WecD is a member of the GNAT family of acetytransferases (pfam00583).
Probab=98.35 E-value=2e-06 Score=88.18 Aligned_cols=80 Identities=11% Similarity=0.031 Sum_probs=70.0
Q ss_pred EEEeCCeEEEEEEEEEeccceeEeeeeeeccCCcCCChhHHHHHHHHHHhhhcCceEEEecc---hhhHHHHhHhccCcE
Q 002320 808 ILTVNSSVVSAGILRVFGQEVAELPLVATSKINHGKGYFQLLFACIEKLLSFLRVKSIVLPA---AEEAESIWTDKFGFK 884 (936)
Q Consensus 808 VL~~~~~vVsaA~lri~g~~~AEIp~vAT~~~~RgqG~gr~L~~~IE~~L~~lgV~~LvlpA---~~ea~~~w~~kfGF~ 884 (936)
+...++++||.+.+.......++|-.+++.++|||+|+|+.|+..+++.+..+|+.+|.+.. -..|..||.+ +||+
T Consensus 103 ~~~~~g~iiG~i~l~~~~~~~~~i~~l~V~p~~rGkG~G~~ll~~~~~~a~~~g~~~I~l~v~~~N~~A~~~Y~k-lGF~ 181 (191)
T TIGR02382 103 LRDASGDPRGYVTLRELNDTDARIGLLAVFPGAQSRGIGAELMQTALNWCYARGLTRLRVATQMGNTAALRLYIR-SGAN 181 (191)
T ss_pred EEccCCeEEEEEEEEecCCCceEEEEEEECHHHcCCCHHHHHHHHHHHHHHHcCCCEEEEEeCCCCHHHHHHHHH-cCCc
Confidence 44568899999999877666789999999999999999999999999999999999999873 3468999998 9998
Q ss_pred EcCH
Q 002320 885 KIDP 888 (936)
Q Consensus 885 ~i~~ 888 (936)
..+.
T Consensus 182 ~~~~ 185 (191)
T TIGR02382 182 IEST 185 (191)
T ss_pred cccc
Confidence 6653
No 31
>PRK10975 TDP-fucosamine acetyltransferase; Provisional
Probab=98.35 E-value=2.1e-06 Score=87.91 Aligned_cols=86 Identities=12% Similarity=0.055 Sum_probs=71.6
Q ss_pred CCcEEEEEEeCCeEEEEEEEEEeccceeEeeeeeeccCCcCCChhHHHHHHHHHHhhhcCceEEEecch---hhHHHHhH
Q 002320 802 GGMYCAILTVNSSVVSAGILRVFGQEVAELPLVATSKINHGKGYFQLLFACIEKLLSFLRVKSIVLPAA---EEAESIWT 878 (936)
Q Consensus 802 ~GfY~~VL~~~~~vVsaA~lri~g~~~AEIp~vAT~~~~RgqG~gr~L~~~IE~~L~~lgV~~LvlpA~---~ea~~~w~ 878 (936)
..++.++...++++||.+.+...+...++|-.+++.++|||||+|+.|+..+++.+...|++++++... ..+..+|+
T Consensus 100 ~~~~~v~~~~~g~~vG~~~l~~~~~~~~~i~~~~V~p~~rg~Gig~~Ll~~~~~~a~~~g~~~i~l~v~~~N~~a~~~ye 179 (194)
T PRK10975 100 DHQCLLLRDASGQIQGFVTLRELNDTDARIGLLAVFPGAQGRGIGARLMQAALNWCQARGLTRLRVATQMGNLAALRLYI 179 (194)
T ss_pred CCcEEEEEcCCCCEEEEEEEEecCCCceEEEEEEEChhhcCCCHHHHHHHHHHHHHHHcCCCEEEEEeCCCcHHHHHHHH
Confidence 334434444678999999998766667899999999999999999999999999999999999987643 56899998
Q ss_pred hccCcEEcCH
Q 002320 879 DKFGFKKIDP 888 (936)
Q Consensus 879 ~kfGF~~i~~ 888 (936)
+ +||...+.
T Consensus 180 k-~Gf~~~~~ 188 (194)
T PRK10975 180 R-SGANIEST 188 (194)
T ss_pred H-CCCeEeEE
Confidence 8 99997653
No 32
>TIGR00124 cit_ly_ligase [citrate (pro-3S)-lyase] ligase. ATP is cleaved to AMP and pyrophosphate during the reaction. The carboxyl end is homologous to a number of cytidyltransferases that also release pyrophosphate.
Probab=98.34 E-value=1.6e-06 Score=97.32 Aligned_cols=82 Identities=17% Similarity=0.203 Sum_probs=73.1
Q ss_pred CCcEEEEEEeCCeEEEEEEEEEeccceeEeeeeeeccCCcCCChhHHHHHHHHHHhhhcCceEEEecchhhHHHHhHhcc
Q 002320 802 GGMYCAILTVNSSVVSAGILRVFGQEVAELPLVATSKINHGKGYFQLLFACIEKLLSFLRVKSIVLPAAEEAESIWTDKF 881 (936)
Q Consensus 802 ~GfY~~VL~~~~~vVsaA~lri~g~~~AEIp~vAT~~~~RgqG~gr~L~~~IE~~L~~lgV~~LvlpA~~ea~~~w~~kf 881 (936)
.-.|+++++.++++||+|++. + + .|..|||+++|||+|+|+.||..|++.+...|+..+++.+.+....||++ +
T Consensus 29 ~~d~~vv~~~~~~lVg~g~l~--g-~--~ik~vaV~~~~rG~Glg~~L~~~L~~~a~~~G~~~l~l~Tk~~~~~fy~k-l 102 (332)
T TIGR00124 29 PLEIFIAVYEDEEIIGCGGIA--G-N--VIKCVAIDESLRGEGLALQLMTELENLAYELGRFHLFIFTKPEYAALFEY-C 102 (332)
T ss_pred CCCEEEEEEECCEEEEEEEEe--c-C--EEEEEEEcHHHcCCCHHHHHHHHHHHHHHHcCCCEEEEEECchHHHHHHH-c
Confidence 335667888999999999973 3 2 48899999999999999999999999999999999999999999999988 9
Q ss_pred CcEEcCHH
Q 002320 882 GFKKIDPE 889 (936)
Q Consensus 882 GF~~i~~~ 889 (936)
||..+...
T Consensus 103 GF~~i~~~ 110 (332)
T TIGR00124 103 GFKTLAEA 110 (332)
T ss_pred CCEEeeee
Confidence 99998863
No 33
>TIGR03827 GNAT_ablB putative beta-lysine N-acetyltransferase. Members of this protein family are GNAT family acetyltransferases, based on a seed alignment in which every member is associated with a lysine 2,3-aminomutase family protein, usually as the adjacent gene. This family includes AblB, the enzyme beta-lysine acetyltransferase that completes the two-step synthesis of the osmolyte (compatible solute) N-epsilon-acetyl-beta-lysine; all members of the family may have this function. Note that N-epsilon-acetyl-beta-lysine has been observed only in methanogenic archaea (e.g. Methanosarcina) but that this model, paired with TIGR03820, suggests a much broader distribution.
Probab=98.31 E-value=2.9e-06 Score=91.78 Aligned_cols=84 Identities=15% Similarity=0.146 Sum_probs=70.4
Q ss_pred cEEEEEEeCCeEEEEEEEEEe-ccceeEeeeeeeccCCcCCChhHHHHHHHHHHhhhcCceEEEecchhh---HHHHhHh
Q 002320 804 MYCAILTVNSSVVSAGILRVF-GQEVAELPLVATSKINHGKGYFQLLFACIEKLLSFLRVKSIVLPAAEE---AESIWTD 879 (936)
Q Consensus 804 fY~~VL~~~~~vVsaA~lri~-g~~~AEIp~vAT~~~~RgqG~gr~L~~~IE~~L~~lgV~~LvlpA~~e---a~~~w~~ 879 (936)
.+.++++.++++||.+.+.+. +...+||--++|+|+|||+|+|+.||..+++.++..|++.+++.+... +..+|.+
T Consensus 158 ~~~~v~~~~g~iVG~~~~~~~~~~~~~eI~~i~V~P~yRG~GiG~~Ll~~l~~~a~~~g~~~l~~~~~~~n~~a~~ly~k 237 (266)
T TIGR03827 158 VVYFGVEDGGKIIALASAEMDPENGNAEMTDFATLPEYRGKGLAKILLAAMEKEMKEKGIRTAYTIARASSYGMNITFAR 237 (266)
T ss_pred cEEEEEEECCEEEEEEEEecCCCCCcEEEEEEEECHHHcCCCHHHHHHHHHHHHHHHCCCcEEEeehhhcchhHHHHHHH
Confidence 333566789999999998553 346799999999999999999999999999999999999999887654 3568877
Q ss_pred ccCcEEcCH
Q 002320 880 KFGFKKIDP 888 (936)
Q Consensus 880 kfGF~~i~~ 888 (936)
+||+..+.
T Consensus 238 -~GF~~~G~ 245 (266)
T TIGR03827 238 -LGYAYGGT 245 (266)
T ss_pred -cCCccccE
Confidence 99997665
No 34
>PRK05279 N-acetylglutamate synthase; Validated
Probab=98.29 E-value=2.4e-06 Score=98.87 Aligned_cols=84 Identities=18% Similarity=0.281 Sum_probs=72.8
Q ss_pred EEEEeCCeEEEEEEEEEec-cceeEeeeeeeccCCcCCChhHHHHHHHHHHhhhcCceEEEecchhhHHHHhHhccCcEE
Q 002320 807 AILTVNSSVVSAGILRVFG-QEVAELPLVATSKINHGKGYFQLLFACIEKLLSFLRVKSIVLPAAEEAESIWTDKFGFKK 885 (936)
Q Consensus 807 ~VL~~~~~vVsaA~lri~g-~~~AEIp~vAT~~~~RgqG~gr~L~~~IE~~L~~lgV~~LvlpA~~ea~~~w~~kfGF~~ 885 (936)
++++.++++||.+.+..+. ...++|..++|+|+|||+|+|+.||+.+++.++..|+..+++.+ ..+..||.+ +||..
T Consensus 337 ~va~~dg~iVG~~~~~~~~~~~~~~I~~l~V~p~~Rg~GiG~~Ll~~l~~~a~~~g~~~l~l~~-~~a~~fY~k-~GF~~ 414 (441)
T PRK05279 337 TVIERDGLIIGCAALYPFPEEKMGEMACLAVHPDYRGSGRGERLLKRIEQRARQLGLKRLFVLT-TRTAHWFLE-RGFVP 414 (441)
T ss_pred EEEEECCEEEEEEEEEEcCCCCeEEEEEEEECHHHcCCCHHHHHHHHHHHHHHHcCCCEEEEec-chHHHHHHH-CcCEE
Confidence 4567899999999877654 36799999999999999999999999999999999999998765 468999988 99999
Q ss_pred cCHHHHH
Q 002320 886 IDPELLS 892 (936)
Q Consensus 886 i~~~~~~ 892 (936)
++..++.
T Consensus 415 ~g~~~~~ 421 (441)
T PRK05279 415 VDVDDLP 421 (441)
T ss_pred CChhhCc
Confidence 9885543
No 35
>PRK09491 rimI ribosomal-protein-alanine N-acetyltransferase; Provisional
Probab=98.27 E-value=5.6e-06 Score=80.34 Aligned_cols=85 Identities=20% Similarity=0.194 Sum_probs=71.0
Q ss_pred CCcEEEEEEeCCeEEEEEEEEEeccceeEeeeeeeccCCcCCChhHHHHHHHHHHhhhcCceEEEec---chhhHHHHhH
Q 002320 802 GGMYCAILTVNSSVVSAGILRVFGQEVAELPLVATSKINHGKGYFQLLFACIEKLLSFLRVKSIVLP---AAEEAESIWT 878 (936)
Q Consensus 802 ~GfY~~VL~~~~~vVsaA~lri~g~~~AEIp~vAT~~~~RgqG~gr~L~~~IE~~L~~lgV~~Lvlp---A~~ea~~~w~ 878 (936)
.+++...+..++++||.+.++.... .+++-.+++.++|||+|+|+.|+..+++.+...|+..+++. .-..+..+|+
T Consensus 38 ~~~~~~~~~~~~~~vG~~~~~~~~~-~~~~~~i~v~~~~rg~G~g~~ll~~~~~~~~~~~~~~~~~~~~~~N~~a~~~y~ 116 (146)
T PRK09491 38 ERYLNLKLTVNGQMAAFAITQVVLD-EATLFNIAVDPDYQRQGLGRALLEHLIDELEKRGVATLWLEVRASNAAAIALYE 116 (146)
T ss_pred cCceEEEEEECCeEEEEEEEEeecC-ceEEEEEEECHHHccCCHHHHHHHHHHHHHHHCCCcEEEEEEccCCHHHHHHHH
Confidence 3455556678899999999876554 46678889999999999999999999999999999988875 4457889999
Q ss_pred hccCcEEcCH
Q 002320 879 DKFGFKKIDP 888 (936)
Q Consensus 879 ~kfGF~~i~~ 888 (936)
+ +||+..+.
T Consensus 117 k-~Gf~~~~~ 125 (146)
T PRK09491 117 S-LGFNEVTI 125 (146)
T ss_pred H-cCCEEeee
Confidence 9 99998765
No 36
>PRK12308 bifunctional argininosuccinate lyase/N-acetylglutamate synthase; Provisional
Probab=98.24 E-value=2.7e-06 Score=102.45 Aligned_cols=82 Identities=15% Similarity=0.208 Sum_probs=73.3
Q ss_pred EEEEeCCeEEEEEEEEEeccceeEeeeeeeccCCcCCChhHHHHHHHHHHhhhcCceEEEecchhhHHHHhHhccCcEEc
Q 002320 807 AILTVNSSVVSAGILRVFGQEVAELPLVATSKINHGKGYFQLLFACIEKLLSFLRVKSIVLPAAEEAESIWTDKFGFKKI 886 (936)
Q Consensus 807 ~VL~~~~~vVsaA~lri~g~~~AEIp~vAT~~~~RgqG~gr~L~~~IE~~L~~lgV~~LvlpA~~ea~~~w~~kfGF~~i 886 (936)
+|++.++++||.+.+.+...+.++|-.++|+|+|||||+|+.||+.+++.++..|+..+++.+ .+..||++ +||...
T Consensus 506 ~Va~~~g~IVG~~~l~~~~~~~~~I~~i~V~P~~rGkGIGk~Ll~~l~~~ak~~g~~~i~l~~--~a~~FYek-~GF~~~ 582 (614)
T PRK12308 506 AVAEHHGEVTGCASLYIYDSGLAEIRSLGVEAGWQVQGQGSALVQYLVEKARQMAIKKVFVLT--RVPEFFMK-QGFSPT 582 (614)
T ss_pred EEEEECCEEEEEEEEEEcCCCeEEEEEEEECHHHcCCCHHHHHHHHHHHHHHHCCCCEEEEee--CcHHHHHH-CCCEEC
Confidence 466889999999999887777899999999999999999999999999999999999998865 35789998 999999
Q ss_pred CHHHH
Q 002320 887 DPELL 891 (936)
Q Consensus 887 ~~~~~ 891 (936)
+...+
T Consensus 583 ~~~~~ 587 (614)
T PRK12308 583 SKSLL 587 (614)
T ss_pred CcccC
Confidence 87653
No 37
>KOG3396 consensus Glucosamine-phosphate N-acetyltransferase [Cell wall/membrane/envelope biogenesis]
Probab=98.15 E-value=5.2e-06 Score=81.63 Aligned_cols=85 Identities=18% Similarity=0.258 Sum_probs=75.1
Q ss_pred cEEEEEEeC--CeEEEEEEEEEe-----c-cceeEeeeeeeccCCcCCChhHHHHHHHHHHhhhcCceEEEecchhhHHH
Q 002320 804 MYCAILTVN--SSVVSAGILRVF-----G-QEVAELPLVATSKINHGKGYFQLLFACIEKLLSFLRVKSIVLPAAEEAES 875 (936)
Q Consensus 804 fY~~VL~~~--~~vVsaA~lri~-----g-~~~AEIp~vAT~~~~RgqG~gr~L~~~IE~~L~~lgV~~LvlpA~~ea~~ 875 (936)
+|.+|++.- ++||++|+|.|. + ..-.+|-=|+|+++||||++|+.|++.|-.++.++|+-.+.|.-.++..+
T Consensus 53 Y~i~Vied~~s~~vigtatL~IE~KfIh~~g~rGhiEDVVV~~~~rgk~LGkllv~~Lv~l~k~lgcYKi~LdC~~~nv~ 132 (150)
T KOG3396|consen 53 YYIVVIEDKESEKVIGTATLFIERKFIHGCGSRGHIEDVVVDSEYRGKQLGKLLVETLVDLAKSLGCYKIILDCDPKNVK 132 (150)
T ss_pred EEEEEEEeCCcCeEEEEEEEEEehhhhhcccccCceeEEEeChhhhhhHHhHHHHHHHHHHHHhcCcEEEEEecchhhhh
Confidence 787888853 899999999873 3 23567888999999999999999999999999999999999999999999
Q ss_pred HhHhccCcEEcCHH
Q 002320 876 IWTDKFGFKKIDPE 889 (936)
Q Consensus 876 ~w~~kfGF~~i~~~ 889 (936)
||.+ |||+..+.+
T Consensus 133 FYeK-cG~s~~~~~ 145 (150)
T KOG3396|consen 133 FYEK-CGYSNAGNE 145 (150)
T ss_pred HHHH-cCccccchh
Confidence 9999 999987643
No 38
>PRK13688 hypothetical protein; Provisional
Probab=98.13 E-value=9.3e-06 Score=81.99 Aligned_cols=77 Identities=18% Similarity=0.247 Sum_probs=60.3
Q ss_pred EEEEeCCeEEEEEEEEEe----------ccceeEeeeeeeccCCcCCChhHHHHHHHHHHhhhcCceEEEecchhhHHHH
Q 002320 807 AILTVNSSVVSAGILRVF----------GQEVAELPLVATSKINHGKGYFQLLFACIEKLLSFLRVKSIVLPAAEEAESI 876 (936)
Q Consensus 807 ~VL~~~~~vVsaA~lri~----------g~~~AEIp~vAT~~~~RgqG~gr~L~~~IE~~L~~lgV~~LvlpA~~ea~~~ 876 (936)
+++..++++||.+.+... ..+.++|-.++|.++|||||+|++||+.+++. ++. +.+.+...|..|
T Consensus 48 ~~~~~~~~~VG~~~l~~~dg~~~~~~~~~~~~~~L~~l~V~p~~rgkGiG~~Ll~~a~~~----~~~-~~~~~~~~a~~F 122 (156)
T PRK13688 48 YGIYYGDSLVARMSLYKKGGVEEPYFEDTQDYLELWKLEVLPKYQNRGYGEMLVDFAKSF----QLP-IKTIARNKSKDF 122 (156)
T ss_pred EEEEECCEEEEEEEEEecCCcccccccCCCCeEEEEEEEECHHHcCCCHHHHHHHHHHHh----CCe-EEEEeccchHHH
Confidence 345678999998877432 24678999999999999999999999876543 343 344566788999
Q ss_pred hHhccCcEEcCHH
Q 002320 877 WTDKFGFKKIDPE 889 (936)
Q Consensus 877 w~~kfGF~~i~~~ 889 (936)
|.+ +||..++..
T Consensus 123 Y~k-~GF~~~~~~ 134 (156)
T PRK13688 123 WLK-LGFTPVEYK 134 (156)
T ss_pred HHh-CCCEEeEEe
Confidence 999 999988765
No 39
>PRK09831 putative acyltransferase; Provisional
Probab=98.13 E-value=7e-06 Score=80.27 Aligned_cols=73 Identities=14% Similarity=0.156 Sum_probs=61.6
Q ss_pred EEEEeCCeEEEEEEEEEeccceeEeeeeeeccCCcCCChhHHHHHHHHHHhhhcCceEEEecchhhHHHHhHhccCcEEc
Q 002320 807 AILTVNSSVVSAGILRVFGQEVAELPLVATSKINHGKGYFQLLFACIEKLLSFLRVKSIVLPAAEEAESIWTDKFGFKKI 886 (936)
Q Consensus 807 ~VL~~~~~vVsaA~lri~g~~~AEIp~vAT~~~~RgqG~gr~L~~~IE~~L~~lgV~~LvlpA~~ea~~~w~~kfGF~~i 886 (936)
+|...++++||.+.+.. ..+..++|.|+|||+|+|+.||..+++.+.. +.+.+...|..||.+ +||..+
T Consensus 56 ~v~~~~~~iiG~~~~~~-----~~i~~~~v~p~~~g~GiG~~Ll~~~~~~~~~-----l~v~~~~~a~~~Y~k-~Gf~~~ 124 (147)
T PRK09831 56 RVAVINAQPVGFITCIE-----HYIDMLFVDPEYTRRGVASALLKPLIKSESE-----LTVDASITAKPFFER-YGFQTV 124 (147)
T ss_pred EEEEECCEEEEEEEehh-----ceeeeEEECHHHcCCCHHHHHHHHHHHHhhh-----eEeecchhhHHHHHH-CCCEEe
Confidence 45678899999988742 4677899999999999999999999998766 455666789999999 999999
Q ss_pred CHHH
Q 002320 887 DPEL 890 (936)
Q Consensus 887 ~~~~ 890 (936)
+...
T Consensus 125 g~~~ 128 (147)
T PRK09831 125 KQQR 128 (147)
T ss_pred eccc
Confidence 8855
No 40
>PRK10140 putative acetyltransferase YhhY; Provisional
Probab=98.12 E-value=1.4e-05 Score=77.85 Aligned_cols=85 Identities=18% Similarity=0.242 Sum_probs=68.0
Q ss_pred cEEEEEEeCCeEEEEEEEEEec----cceeEeeeeeeccCCcCCChhHHHHHHHHHHhhh-cCceEEEecc---hhhHHH
Q 002320 804 MYCAILTVNSSVVSAGILRVFG----QEVAELPLVATSKINHGKGYFQLLFACIEKLLSF-LRVKSIVLPA---AEEAES 875 (936)
Q Consensus 804 fY~~VL~~~~~vVsaA~lri~g----~~~AEIp~vAT~~~~RgqG~gr~L~~~IE~~L~~-lgV~~LvlpA---~~ea~~ 875 (936)
.+.+++..++++||.+.+.... ...+++. +.+.++|||+|+|+.|++.+...+.. .|.+++.+.. -..|..
T Consensus 51 ~~~~v~~~~~~~vG~~~~~~~~~~~~~~~~~~~-~~v~p~~rg~Gig~~ll~~l~~~~~~~~~~~~i~l~v~~~N~~a~~ 129 (162)
T PRK10140 51 IKQLVACIDGDVVGHLTIDVQQRPRRSHVADFG-ICVDSRWKNRGVASALMREMIEMCDNWLRVDRIELTVFVDNAPAIK 129 (162)
T ss_pred cEEEEEEECCEEEEEEEEecccccccceEEEEE-EEECHHHcCCCHHHHHHHHHHHHHHhhCCccEEEEEEEcCCHHHHH
Confidence 3456667889999999987542 2355654 89999999999999999999999888 7888876655 467889
Q ss_pred HhHhccCcEEcCHHH
Q 002320 876 IWTDKFGFKKIDPEL 890 (936)
Q Consensus 876 ~w~~kfGF~~i~~~~ 890 (936)
+|++ +||...+...
T Consensus 130 ~y~k-~GF~~~g~~~ 143 (162)
T PRK10140 130 VYKK-YGFEIEGTGK 143 (162)
T ss_pred HHHH-CCCEEEeecc
Confidence 9998 9999887643
No 41
>PHA00673 acetyltransferase domain containing protein
Probab=98.08 E-value=2.1e-05 Score=79.46 Aligned_cols=83 Identities=13% Similarity=0.089 Sum_probs=72.2
Q ss_pred EEEEEEeCCeEEEEEEEEEec------cceeEeeeeeeccCCcCCChhHHHHHHHHHHhhhcCceEEEecchhh--HHHH
Q 002320 805 YCAILTVNSSVVSAGILRVFG------QEVAELPLVATSKINHGKGYFQLLFACIEKLLSFLRVKSIVLPAAEE--AESI 876 (936)
Q Consensus 805 Y~~VL~~~~~vVsaA~lri~g------~~~AEIp~vAT~~~~RgqG~gr~L~~~IE~~L~~lgV~~LvlpA~~e--a~~~ 876 (936)
..+|.+.+|+|||++.+.+.. ...+.|--|-|++++||||+|+.||+.+++.++..|+..|.+.|.++ .+.|
T Consensus 56 ~llVa~~~g~vVG~~~l~~~p~l~~~~~~~~~Ie~l~V~~~~RGqGIG~~Ll~~A~~~Ar~~Gc~~lyis~~p~~~tv~f 135 (154)
T PHA00673 56 HFLGVFRGEELVGFACLLVTPVPHFKGQLIGTTESIFVAAAHRPGGAGMALLRATEALARDLGATGLYVSGPTEGRLVQL 135 (154)
T ss_pred EEEEEEECCEEEEEEEEEEecCCccCCccEEEEEEEEEChhccCCCHHHHHHHHHHHHHHHCCCCEEEEecCCCccchHH
Confidence 345667899999999988755 35678999999999999999999999999999999999999999874 5889
Q ss_pred hHhccCcEEcCH
Q 002320 877 WTDKFGFKKIDP 888 (936)
Q Consensus 877 w~~kfGF~~i~~ 888 (936)
|.+ .|++....
T Consensus 136 y~~-~g~~~~~~ 146 (154)
T PHA00673 136 LPA-AGYRETNR 146 (154)
T ss_pred HHh-CCchhhch
Confidence 999 99986543
No 42
>TIGR03448 mycothiol_MshD mycothiol biosynthesis acetyltransferase. Members of this family are MshD, the acetyltransferase that catalyzes the final step of mycothiol biosynthesis in various members of the Actinomyctes, Mycothiol replaces glutathione in these species.
Probab=98.07 E-value=2.5e-05 Score=84.53 Aligned_cols=81 Identities=7% Similarity=0.000 Sum_probs=65.0
Q ss_pred EEEEEEeCCeEEEEEEEEEeccceeEeeeeeeccCCcCCChhHHHHHHHHHHhhhcCceEEEecch-hhHHHHhHhccCc
Q 002320 805 YCAILTVNSSVVSAGILRVFGQEVAELPLVATSKINHGKGYFQLLFACIEKLLSFLRVKSIVLPAA-EEAESIWTDKFGF 883 (936)
Q Consensus 805 Y~~VL~~~~~vVsaA~lri~g~~~AEIp~vAT~~~~RgqG~gr~L~~~IE~~L~~lgV~~LvlpA~-~ea~~~w~~kfGF 883 (936)
+.++...++++||.+.+.......+++-.++|+|+|||+|+|+.||+.+++.+. +.-.+++... ..|+.||.+ +||
T Consensus 47 ~~~~~~~~~~~vG~~~~~~~~~~~~~~~~l~V~p~~rg~GiG~~Ll~~~~~~~~--~~~~~~~~~~n~~a~~fy~~-~Gf 123 (292)
T TIGR03448 47 RHLVAVDSDPIVGYANLVPARGTDPAMAELVVHPAHRRRGIGRALIRALLAKGG--GRLRVWAHGDLPAARALASR-LGL 123 (292)
T ss_pred eEEEEEECCEEEEEEEEEcCCCCcceEEEEEECHhhcCCCHHHHHHHHHHHhcc--CceEEEEcCCCHHHHHHHHH-CCC
Confidence 345667889999999988765555788899999999999999999999999865 2234555543 578999999 999
Q ss_pred EEcCH
Q 002320 884 KKIDP 888 (936)
Q Consensus 884 ~~i~~ 888 (936)
..+..
T Consensus 124 ~~~~~ 128 (292)
T TIGR03448 124 VPTRE 128 (292)
T ss_pred EEccE
Confidence 87765
No 43
>KOG4443 consensus Putative transcription factor HALR/MLL3, involved in embryonic development [General function prediction only]
Probab=98.05 E-value=1.7e-06 Score=101.76 Aligned_cols=79 Identities=32% Similarity=0.902 Sum_probs=64.4
Q ss_pred CCCcEEeccCCCCccccccCCC--CC-cCCCCcccccccccccccccccccccccccccccccCchhhccchheeecccc
Q 002320 566 DGGNLLPCDGCPRAFHKECASL--SS-IPQGDWYCKYCQNMFERKRFLQHDANAVEAGRVSGVDSVEQITKRCIRIVKNL 642 (936)
Q Consensus 566 dgG~Ll~CD~Cp~afH~~CL~L--~~-vP~g~W~Cp~C~~~~~~e~~v~~n~~aia~Gr~~Gvd~ieqi~~rciR~vkd~ 642 (936)
-.|.|+-|..|...||.+|+.+ .. +-.+-|.|+.|+.
T Consensus 31 ~ag~m~ac~~c~~~yH~~cvt~~~~~~~l~~gWrC~~crv---------------------------------------- 70 (694)
T KOG4443|consen 31 RAGRLLACSDCGQKYHPYCVTSWAQHAVLSGGWRCPSCRV---------------------------------------- 70 (694)
T ss_pred ccCcchhhhhhcccCCcchhhHHHhHHHhcCCcccCCcee----------------------------------------
Confidence 3568999999999999999962 11 1234499999973
Q ss_pred cccCCccccccCCCCCCCCCCCCceeeCCCcCcccCCCccccCcCCcccCCCCCccee
Q 002320 643 EAELSGCLLCRGCDFSKSGFGPRTILLCDQCEREFHVGCLKKHKMADLRELPKGKWFC 700 (936)
Q Consensus 643 e~e~~~C~iC~~~d~s~sg~~~g~LI~CDqC~rayHv~CL~p~~l~~L~evPeg~WfC 700 (936)
|..|+.. .++..++.|+.|+-+||.+|..| +++.+|.|.|+|
T Consensus 71 ------Ce~c~~~------gD~~kf~~Ck~cDvsyh~yc~~P----~~~~v~sg~~~c 112 (694)
T KOG4443|consen 71 ------CEACGTT------GDPKKFLLCKRCDVSYHCYCQKP----PNDKVPSGPWLC 112 (694)
T ss_pred ------eeecccc------CCcccccccccccccccccccCC----ccccccCccccc
Confidence 7778743 26788999999999999999998 678999999999
No 44
>TIGR03448 mycothiol_MshD mycothiol biosynthesis acetyltransferase. Members of this family are MshD, the acetyltransferase that catalyzes the final step of mycothiol biosynthesis in various members of the Actinomyctes, Mycothiol replaces glutathione in these species.
Probab=97.93 E-value=3.4e-05 Score=83.46 Aligned_cols=76 Identities=16% Similarity=0.192 Sum_probs=63.9
Q ss_pred CCeEEEEEEEEEecc--ceeEeeeeeeccCCcCCChhHHHHHHHHHHhhhcCceEEEecch---hhHHHHhHhccCcEEc
Q 002320 812 NSSVVSAGILRVFGQ--EVAELPLVATSKINHGKGYFQLLFACIEKLLSFLRVKSIVLPAA---EEAESIWTDKFGFKKI 886 (936)
Q Consensus 812 ~~~vVsaA~lri~g~--~~AEIp~vAT~~~~RgqG~gr~L~~~IE~~L~~lgV~~LvlpA~---~ea~~~w~~kfGF~~i 886 (936)
++++||.+.+.+... +.++|-.++|+|+|||+|+|+.|+..+++.+...|+..+.+... ..+..||++ +||+..
T Consensus 208 ~~~~vG~~~~~~~~~~~~~~~i~~~~V~p~~rg~GiG~~ll~~~~~~~~~~g~~~v~l~v~~~N~~a~~~y~k-~GF~~~ 286 (292)
T TIGR03448 208 PGELLGFHWTKVHPDEPALGEVYVVGVDPAAQGRGLGDALTLIGLHHLAARGLPAVMLYVEADNEAAVRTYEK-LGFTVA 286 (292)
T ss_pred CCcEEEEEEEEecCCCCceeEEEEEEECHHHcCCCHHHHHHHHHHHHHHHCCCCEEEEEEeCCCHHHHHHHHH-cCCEEc
Confidence 689999876665442 46788889999999999999999999999999999998777654 468999999 999876
Q ss_pred CH
Q 002320 887 DP 888 (936)
Q Consensus 887 ~~ 888 (936)
..
T Consensus 287 ~~ 288 (292)
T TIGR03448 287 EV 288 (292)
T ss_pred cc
Confidence 53
No 45
>TIGR02406 ectoine_EctA L-2,4-diaminobutyric acid acetyltransferase. This enzyme family is the EctA of ectoine biosynthesis. Ectoine is a compatible solute, analagous to trehalose, betaines, etc., found often in halotolerant organisms. EctA is L-2,4-diaminobutyric acid acetyltransferase, also called DABA acetyltransferase.
Probab=97.91 E-value=4.6e-05 Score=76.12 Aligned_cols=83 Identities=12% Similarity=0.096 Sum_probs=65.8
Q ss_pred EEEEEE-eCCeEEEEEEEEEe--ccceeEeeeeeeccCCcCCChhHHHHHHHHHHhhhcCceEEEec---chhhHHHHhH
Q 002320 805 YCAILT-VNSSVVSAGILRVF--GQEVAELPLVATSKINHGKGYFQLLFACIEKLLSFLRVKSIVLP---AAEEAESIWT 878 (936)
Q Consensus 805 Y~~VL~-~~~~vVsaA~lri~--g~~~AEIp~vAT~~~~RgqG~gr~L~~~IE~~L~~lgV~~Lvlp---A~~ea~~~w~ 878 (936)
+.++.+ .++++||.+.+... ..+.+.+-.+||+++|||+|+|+.|+..+++.+...++.++.+. .-..|..+|+
T Consensus 40 ~~~v~~~~~~~ivG~~~~~~~~~~~~~~~i~~l~V~p~~rg~GiG~~L~~~l~~~a~~~~~~~i~~~v~~~N~~a~~ly~ 119 (157)
T TIGR02406 40 TSIVAESEGGEIVGFVSGYLRPDRPDVLFVWQVAVDPRARGKGLARRLLEALLERVACERVRHLETTITPDNQASRALFK 119 (157)
T ss_pred cEEEEEcCCCeEEEEEEEEecCCCCCeEEEEEEEEChHhccCcHHHHHHHHHHHHHHhCCCCEEEEEEcCCCHHHHHHHH
Confidence 345556 46799998765432 34568899999999999999999999999999998888887765 4557788999
Q ss_pred hccCcEEcCH
Q 002320 879 DKFGFKKIDP 888 (936)
Q Consensus 879 ~kfGF~~i~~ 888 (936)
+ +||+....
T Consensus 120 k-~G~~~~~~ 128 (157)
T TIGR02406 120 A-LARRRGVH 128 (157)
T ss_pred H-hCcccCCC
Confidence 8 99986443
No 46
>KOG3139 consensus N-acetyltransferase [General function prediction only]
Probab=97.88 E-value=6.9e-05 Score=75.84 Aligned_cols=73 Identities=16% Similarity=0.171 Sum_probs=62.4
Q ss_pred EEEEEEEEEecc---ceeEeeeeeeccCCcCCChhHHHHHHHHHHhhhcCceEEEecch---hhHHHHhHhccCcEEcCH
Q 002320 815 VVSAGILRVFGQ---EVAELPLVATSKINHGKGYFQLLFACIEKLLSFLRVKSIVLPAA---EEAESIWTDKFGFKKIDP 888 (936)
Q Consensus 815 vVsaA~lri~g~---~~AEIp~vAT~~~~RgqG~gr~L~~~IE~~L~~lgV~~LvlpA~---~ea~~~w~~kfGF~~i~~ 888 (936)
.|||........ .-++|-.+||+++|||||+|++|+..+.+..+..|+..++|.+. ..|..+|++ |||.....
T Consensus 68 ~VGai~ck~~~~r~~~rgyi~mLaV~~e~Rg~GIg~aLvr~aId~m~~~g~~eVvLeTe~~n~~A~~LY~s-LGF~r~~r 146 (165)
T KOG3139|consen 68 TVGAIVCKLDTHRNTLRGYIAMLAVDSEYRGQGIGKALVRKAIDAMRSRGYSEVVLETEVTNLSALRLYES-LGFKRDKR 146 (165)
T ss_pred eEEEEEEeccccCCcceEEEEEEEechhhccccHHHHHHHHHHHHHHHCCCcEEEEeccccchHHHHHHHh-cCceEecc
Confidence 477766654332 35899999999999999999999999999999999999999874 578999999 99998654
No 47
>PF08445 FR47: FR47-like protein; InterPro: IPR013653 Proteins in this entry have a conserved region similar to the C-terminal region of the Drosophila melanogaster (Fruit fly) hypothetical protein FR47 (Q9VR51 from SWISSPROT). This protein has been found to consist of two N-acyltransferase-like domains swapped with the C-terminal strands. ; GO: 0016747 transferase activity, transferring acyl groups other than amino-acyl groups; PDB: 1SQH_A 3EC4_B.
Probab=97.87 E-value=7.3e-05 Score=68.12 Aligned_cols=73 Identities=16% Similarity=0.201 Sum_probs=55.1
Q ss_pred eEEEEEEEEEeccceeEeeeeeeccCCcCCChhHHHHHHHHHHhhhcCceEEEec--chhhHHHHhHhccCcEEcCH
Q 002320 814 SVVSAGILRVFGQEVAELPLVATSKINHGKGYFQLLFACIEKLLSFLRVKSIVLP--AAEEAESIWTDKFGFKKIDP 888 (936)
Q Consensus 814 ~vVsaA~lri~g~~~AEIp~vAT~~~~RgqG~gr~L~~~IE~~L~~lgV~~Lvlp--A~~ea~~~w~~kfGF~~i~~ 888 (936)
+.+..+.-.+.... ++|..+.|.|+|||+|+|+.|+.+|.+.+...|...++.- .-..++.+|++ +||+.+.+
T Consensus 8 ~~~~l~~~~~~~~~-g~i~~v~t~p~~RrrGlg~~lv~~l~~~~~~~g~~~~l~v~~~N~~s~~ly~k-lGf~~~~~ 82 (86)
T PF08445_consen 8 ELVALVAWIIRSDD-GEIGGVYTLPEHRRRGLGSALVAALARELLERGKTPFLYVDADNEASIRLYEK-LGFREIEE 82 (86)
T ss_dssp CCEEEEEEEEESCT-CCEEEEEE-GGGTTSSHHHHHHHHHHHHHHHTTSEEEEEEETT-HHHHHHHHH-CT-EEEEE
T ss_pred CccceeeEeeeCCC-cEEEEEEECHHHcCCCHHHHHHHHHHHHHHhCCCcEEEEEECCCHHHHHHHHH-cCCEEEEE
Confidence 44555554454444 9999999999999999999999999999888888764432 34467899999 99998753
No 48
>PF00628 PHD: PHD-finger; InterPro: IPR019787 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the PHD (homeodomain) zinc finger domain [,], which is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in chromatin-mediated transcriptional regulation. The PHD finger motif is reminiscent of, but distinct from the C3HC4 type RING finger. The function of this domain is not yet known but in analogy with the LIM domain it could be involved in protein-protein interaction and be important for the assembly or activity of multicomponent complexes involved in transcriptional activation or repression. Alternatively, the interactions could be intra-molecular and be important in maintaining the structural integrity of the protein. In similarity to the RING finger and the LIM domain, the PHD finger is thought to bind two zinc ions. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0005515 protein binding; PDB: 3ZVY_A 2LGG_A 3SOW_A 3SOU_B 3ASL_A 3ASK_A 3ZVZ_B 3T6R_A 2LGK_A 3SOX_B ....
Probab=97.87 E-value=2.8e-06 Score=69.65 Aligned_cols=48 Identities=31% Similarity=0.958 Sum_probs=36.9
Q ss_pred cccccCCCCCCCCCCCCceeeCCCcCcccCCCccccCcCCcccCCCCCcceecCCch
Q 002320 649 CLLCRGCDFSKSGFGPRTILLCDQCEREFHVGCLKKHKMADLRELPKGKWFCCMDCS 705 (936)
Q Consensus 649 C~iC~~~d~s~sg~~~g~LI~CDqC~rayHv~CL~p~~l~~L~evPeg~WfC~~~C~ 705 (936)
|.+|+..+ ..+.+|.||.|.++||..|+.+... ....+.+.|+| +.|.
T Consensus 2 C~vC~~~~------~~~~~i~C~~C~~~~H~~C~~~~~~--~~~~~~~~w~C-~~C~ 49 (51)
T PF00628_consen 2 CPVCGQSD------DDGDMIQCDSCNRWYHQECVGPPEK--AEEIPSGDWYC-PNCR 49 (51)
T ss_dssp BTTTTSSC------TTSSEEEBSTTSCEEETTTSTSSHS--HHSHHSSSBSS-HHHH
T ss_pred CcCCCCcC------CCCCeEEcCCCChhhCcccCCCChh--hccCCCCcEEC-cCCc
Confidence 88898742 5789999999999999999988431 12334569999 6775
No 49
>TIGR03103 trio_acet_GNAT GNAT-family acetyltransferase TIGR03103. Members of this protein family belong to the GNAT family of acetyltransferases. Each is part of a conserved three-gene cassette sparsely distributed across at least twenty different species known so far, including alpha, beta, and gamma Proteobacteria, Mycobacterium, and Prosthecochloris, which is a member of the Chlorobi. The other two members of the cassette are a probable protease and an asparagine synthetase family protein.
Probab=97.86 E-value=5.7e-05 Score=90.14 Aligned_cols=85 Identities=12% Similarity=0.133 Sum_probs=67.6
Q ss_pred CcEEEEEEe--CCeEEEEEEEEEe------ccceeEeeeeeeccCCcCCChhHHHHHHHHHHhhhcCceEEEecc---hh
Q 002320 803 GMYCAILTV--NSSVVSAGILRVF------GQEVAELPLVATSKINHGKGYFQLLFACIEKLLSFLRVKSIVLPA---AE 871 (936)
Q Consensus 803 GfY~~VL~~--~~~vVsaA~lri~------g~~~AEIp~vAT~~~~RgqG~gr~L~~~IE~~L~~lgV~~LvlpA---~~ 871 (936)
+.+.+|.+. ++++||.+....+ ....++|-.++|+|+|||+|+|+.||..+++.++..|+.++.|.. -.
T Consensus 122 ~~~~~vA~~~~~g~IVG~~~~~~~~~~~~d~~~~~~i~~l~V~P~~Rg~GIG~~Ll~~l~e~a~~~G~~~i~L~V~~~N~ 201 (547)
T TIGR03103 122 AITYLVAEDEASGAIIGTVMGVDHRKAFNDPEHGSSLWCLAVDPQAAHPGVGEALVRALAEHFQSRGCAYMDLSVMHDNE 201 (547)
T ss_pred CceEEEEEECCCCeEEEEEEEEeccccccCCCCCeEEEEEEECHHHcCCCHHHHHHHHHHHHHHHCCCCEEEEEEcCCCH
Confidence 334455553 6899999875332 123478889999999999999999999999999999999987653 46
Q ss_pred hHHHHhHhccCcEEcCH
Q 002320 872 EAESIWTDKFGFKKIDP 888 (936)
Q Consensus 872 ea~~~w~~kfGF~~i~~ 888 (936)
.|..||.+ +||..++.
T Consensus 202 ~Ai~fY~k-lGf~~~~~ 217 (547)
T TIGR03103 202 QAIALYEK-LGFRRIPV 217 (547)
T ss_pred HHHHHHHH-CCCEEeeE
Confidence 78999998 99987654
No 50
>PF13420 Acetyltransf_4: Acetyltransferase (GNAT) domain; PDB: 3DR8_A 3DR6_A 2AE6_B 2JLM_C 2J8R_A 1YVO_B 2J8M_A 2J8N_A 2BL1_A 3IWG_A ....
Probab=97.82 E-value=0.00014 Score=70.77 Aligned_cols=80 Identities=21% Similarity=0.286 Sum_probs=64.5
Q ss_pred EEEE-eCCeEEEEEEEEEec--cceeEeeeeeeccCCcCCChhHHHHHHHHHHh-hhcCceEEEec---chhhHHHHhHh
Q 002320 807 AILT-VNSSVVSAGILRVFG--QEVAELPLVATSKINHGKGYFQLLFACIEKLL-SFLRVKSIVLP---AAEEAESIWTD 879 (936)
Q Consensus 807 ~VL~-~~~~vVsaA~lri~g--~~~AEIp~vAT~~~~RgqG~gr~L~~~IE~~L-~~lgV~~Lvlp---A~~ea~~~w~~ 879 (936)
+++. .+|++||.+.++... ...+++- +-+.++||++|+|+.|+..|++.+ ..+|++++.+- --..++.||++
T Consensus 53 ~~v~~~~g~iiG~~~~~~~~~~~~~~~~~-~~v~~~~~~~gig~~l~~~l~~~af~~~~~~~i~~~v~~~N~~~i~~~~~ 131 (155)
T PF13420_consen 53 FLVAEEDGKIIGYVSLRDIDPYNHTAELS-IYVSPDYRGKGIGRKLLDELIEYAFKELGIHKIYLEVFSSNEKAINFYKK 131 (155)
T ss_dssp EEEEECTTEEEEEEEEEESSSGTTEEEEE-EEEEGGGTTSSHHHHHHHHHHHHH-HHTT-CEEEEEEETT-HHHHHHHHH
T ss_pred EEEEEcCCcEEEEEEEEeeeccCCEEEEe-eEEChhHCCCcHHHHHHHHHHHHhhhccCeEEEEEEEecCCHHHHHHHHh
Confidence 3444 599999999998655 3577777 445599999999999999999999 99999998754 35578999999
Q ss_pred ccCcEEcCH
Q 002320 880 KFGFKKIDP 888 (936)
Q Consensus 880 kfGF~~i~~ 888 (936)
+||+..+.
T Consensus 132 -~GF~~~g~ 139 (155)
T PF13420_consen 132 -LGFEEEGE 139 (155)
T ss_dssp -TTEEEEEE
T ss_pred -CCCEEEEE
Confidence 99998764
No 51
>COG0456 RimI Acetyltransferases [General function prediction only]
Probab=97.80 E-value=5.8e-05 Score=74.73 Aligned_cols=76 Identities=22% Similarity=0.251 Sum_probs=62.5
Q ss_pred eEEEEEEEE-Eecc----ceeEeeeeeeccCCcCCChhHHHHHHHHHHhhhcCc-eEEEecch---hhHHHHhHhccCcE
Q 002320 814 SVVSAGILR-VFGQ----EVAELPLVATSKINHGKGYFQLLFACIEKLLSFLRV-KSIVLPAA---EEAESIWTDKFGFK 884 (936)
Q Consensus 814 ~vVsaA~lr-i~g~----~~AEIp~vAT~~~~RgqG~gr~L~~~IE~~L~~lgV-~~LvlpA~---~ea~~~w~~kfGF~ 884 (936)
+++|....+ +.+. ..++|-.+||+|+|||+|+|+.|++.+++.+...+. ..++|-.. ..|+.+|.+ +||.
T Consensus 72 ~~~G~~~~~~~~~~~~~~~~~~i~~iaV~p~~r~~Gig~~Ll~~~~~~~~~~~~~~~~~L~V~~~N~~Ai~lY~~-~GF~ 150 (177)
T COG0456 72 KVVGFLLVRVVDGRPSADHEGHIYNLAVDPEYRGRGIGRALLDEALERLRERGLADKIVLEVRESNEAAIGLYRK-LGFE 150 (177)
T ss_pred ceeEEEEEEEecCCccccCccEEEEEEEChHhhcCCHHHHHHHHHHHHHHhcCCCceEEEEEecCChHHHHHHHH-cCCE
Confidence 478877775 3332 278999999999999999999999999999999886 77776654 468999999 9999
Q ss_pred EcCHHH
Q 002320 885 KIDPEL 890 (936)
Q Consensus 885 ~i~~~~ 890 (936)
.+....
T Consensus 151 ~~~~~~ 156 (177)
T COG0456 151 VVKIRK 156 (177)
T ss_pred EEeeeh
Confidence 987644
No 52
>smart00249 PHD PHD zinc finger. The plant homeodomain (PHD) finger is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in epigenetics and chromatin-mediated transcriptional regulation. The PHD finger binds two zinc ions using the so-called 'cross-brace' motif and is thus structurally related to the PRK01346 hypothetical protein; Provisional
Probab=97.78 E-value=8.4e-05 Score=84.87 Aligned_cols=80 Identities=16% Similarity=0.127 Sum_probs=67.6
Q ss_pred EEEEEeCCeEEEEEEEEEe------cc--ceeEeeeeeeccCCcCCChhHHHHHHHHHHhhhcCceEEEecchhhHHHHh
Q 002320 806 CAILTVNSSVVSAGILRVF------GQ--EVAELPLVATSKINHGKGYFQLLFACIEKLLSFLRVKSIVLPAAEEAESIW 877 (936)
Q Consensus 806 ~~VL~~~~~vVsaA~lri~------g~--~~AEIp~vAT~~~~RgqG~gr~L~~~IE~~L~~lgV~~LvlpA~~ea~~~w 877 (936)
+++.+.++++||.+.+..+ +. ..+.|-.|+|.|+|||+|+|+.||..+++.++..|+..++|.+.. ..||
T Consensus 49 ~~va~~~~~lvg~~~~~~~~~~~~~~~~~~~~~i~~v~V~P~~RgrGig~~Ll~~~l~~a~~~g~~~~~L~~~~--~~~Y 126 (411)
T PRK01346 49 TLGAFDGDEVVGTAGAFDLRLTVPGGAVLPAAGVTAVTVAPTHRRRGLLTALMREQLRRIRERGEPVAALTASE--GGIY 126 (411)
T ss_pred eEEEEECCEEEEEEEEeccccccCCCCccceeEEEEEEEChhhcCCCHHHHHHHHHHHHHHHCCCcEEEEECCc--hhhH
Confidence 3566789999999887643 22 468999999999999999999999999999999999988887665 4789
Q ss_pred HhccCcEEcCH
Q 002320 878 TDKFGFKKIDP 888 (936)
Q Consensus 878 ~~kfGF~~i~~ 888 (936)
.+ |||.....
T Consensus 127 ~r-~Gf~~~~~ 136 (411)
T PRK01346 127 GR-FGYGPATY 136 (411)
T ss_pred hh-CCCeeccc
Confidence 98 99987765
No 54
>cd04301 NAT_SF N-Acyltransferase superfamily: Various enzymes that characteristically catalyze the transfer of an acyl group to a substrate. NAT (N-Acyltransferase) is a large superfamily of enzymes that mostly catalyze the transfer of an acyl group to a substrate and are implicated in a variety of functions, ranging from bacterial antibiotic resistance to circadian rhythms in mammals. Members include GCN5-related N-Acetyltransferases (GNAT) such as Aminoglycoside N-acetyltransferases, Histone N-acetyltransferase (HAT) enzymes, and Serotonin N-acetyltransferase, which catalyze the transfer of an acetyl group to a substrate. The kinetic mechanism of most GNATs involves the ordered formation of a ternary complex: the reaction begins with Acetyl Coenzyme A (AcCoA) binding, followed by binding of substrate, then direct transfer of the acetyl group from AcCoA to the substrate, followed by product and subsequent CoA release. Other family members include Arginine/ornithine N-succinyltransfera
Probab=97.77 E-value=0.0001 Score=58.47 Aligned_cols=61 Identities=20% Similarity=0.117 Sum_probs=54.5
Q ss_pred EEEEeCCeEEEEEEEEEec--cceeEeeeeeeccCCcCCChhHHHHHHHHHHhhhcCceEEEe
Q 002320 807 AILTVNSSVVSAGILRVFG--QEVAELPLVATSKINHGKGYFQLLFACIEKLLSFLRVKSIVL 867 (936)
Q Consensus 807 ~VL~~~~~vVsaA~lri~g--~~~AEIp~vAT~~~~RgqG~gr~L~~~IE~~L~~lgV~~Lvl 867 (936)
+++..++++||.+.+.... ...+++-.++++++|||+|+|+.|+..+.+.+...|++++++
T Consensus 2 ~~~~~~~~~ig~~~~~~~~~~~~~~~l~~~~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~v~~ 64 (65)
T cd04301 2 LVAEDDGEIVGFASLSPDGSGGDTAYIGDLAVLPEYRGKGIGSALLEAAEEEARERGAKRLRL 64 (65)
T ss_pred EEEecCCEEEEEEEEEecCCCCccEEEEEEEECHHHcCcCHHHHHHHHHHHHHHHcCCcEEEe
Confidence 3556789999999988766 478999999999999999999999999999999999998875
No 55
>COG3393 Predicted acetyltransferase [General function prediction only]
Probab=97.73 E-value=8.6e-05 Score=80.38 Aligned_cols=83 Identities=20% Similarity=0.199 Sum_probs=70.4
Q ss_pred EEEEEEeCCeEEEEEEEEEeccceeEeeeeeeccCCcCCChhHHHHHHHHHHhhhcCceEEEec--chhhHHHHhHhccC
Q 002320 805 YCAILTVNSSVVSAGILRVFGQEVAELPLVATSKINHGKGYFQLLFACIEKLLSFLRVKSIVLP--AAEEAESIWTDKFG 882 (936)
Q Consensus 805 Y~~VL~~~~~vVsaA~lri~g~~~AEIp~vAT~~~~RgqG~gr~L~~~IE~~L~~lgV~~Lvlp--A~~ea~~~w~~kfG 882 (936)
.++.+..+|+||+.|...-.+..+|+|-.|.|.|+|||+||+.+|+..+-..+...|-...+.- .-+-|..+|.+ +|
T Consensus 178 ~~~f~~~d~~iVa~A~t~a~~~~~~~I~gV~T~peyR~kGyAt~lva~L~~~lL~eGk~~~L~~~~~N~~A~~iY~r-iG 256 (268)
T COG3393 178 RTYFLEGDGKIVAKAETAAENPAYAQINGVYTHPEYRGKGYATALVATLAAKLLAEGKIPCLFVNSDNPVARRIYQR-IG 256 (268)
T ss_pred eEEEEccCCcEEEeeeccccCCcceEEEEEEcCHHHccccHHHHHHHHHHHHHHhCCCeeEEEEecCCHHHHHHHHH-hC
Confidence 3444566679999999999999999999999999999999999999999988888887765544 44567889999 99
Q ss_pred cEEcCH
Q 002320 883 FKKIDP 888 (936)
Q Consensus 883 F~~i~~ 888 (936)
|+.+++
T Consensus 257 F~~~g~ 262 (268)
T COG3393 257 FREIGE 262 (268)
T ss_pred Ceecce
Confidence 998874
No 56
>PRK10514 putative acetyltransferase; Provisional
Probab=97.70 E-value=0.00016 Score=69.65 Aligned_cols=75 Identities=16% Similarity=0.115 Sum_probs=58.9
Q ss_pred EEEeCCeEEEEEEEEEeccceeEeeeeeeccCCcCCChhHHHHHHHHHHhhhcCceEEEecchhhHHHHhHhccCcEEcC
Q 002320 808 ILTVNSSVVSAGILRVFGQEVAELPLVATSKINHGKGYFQLLFACIEKLLSFLRVKSIVLPAAEEAESIWTDKFGFKKID 887 (936)
Q Consensus 808 VL~~~~~vVsaA~lri~g~~~AEIp~vAT~~~~RgqG~gr~L~~~IE~~L~~lgV~~LvlpA~~ea~~~w~~kfGF~~i~ 887 (936)
++..++++||.+.+.- .++..+++.++|||+|+|+.|++.+++.+.. +...+...-..+..+|++ +||+..+
T Consensus 54 ~~~~~~~~iG~~~~~~-----~~~~~~~v~p~~rgkGig~~Ll~~~~~~~~~--i~~~v~~~N~~a~~~yek-~Gf~~~~ 125 (145)
T PRK10514 54 AVDERDQPVGFMLLSG-----GHMEALFVDPDVRGCGVGRMLVEHALSLHPE--LTTDVNEQNEQAVGFYKK-MGFKVTG 125 (145)
T ss_pred EEecCCcEEEEEEEec-----CcEeEEEECHHhccCCHHHHHHHHHHHhccc--cEEEeecCCHHHHHHHHH-CCCEEec
Confidence 3356789999887642 3456799999999999999999999997643 444455566789999998 9999987
Q ss_pred HHH
Q 002320 888 PEL 890 (936)
Q Consensus 888 ~~~ 890 (936)
...
T Consensus 126 ~~~ 128 (145)
T PRK10514 126 RSE 128 (145)
T ss_pred ccc
Confidence 644
No 57
>KOG1512 consensus PHD Zn-finger protein [General function prediction only]
Probab=97.70 E-value=1.5e-05 Score=86.10 Aligned_cols=53 Identities=32% Similarity=0.790 Sum_probs=44.7
Q ss_pred cccCCccccccccccCCcCcccccCCCCcEEeccCCCCccccccCCCCCcCCCCcccc-cccc
Q 002320 541 YKNGLGIICHCCNSEVSPSQFEAHADGGNLLPCDGCPRAFHKECASLSSIPQGDWYCK-YCQN 602 (936)
Q Consensus 541 ~~~~~~i~C~~C~~evSpS~FE~hadgG~Ll~CD~Cp~afH~~CL~L~~vP~g~W~Cp-~C~~ 602 (936)
|..-+...|.+|+++.. ..++++||.|+++||..|++|..+|.|.|+|. .|..
T Consensus 309 W~C~~C~lC~IC~~P~~---------E~E~~FCD~CDRG~HT~CVGL~~lP~G~WICD~~C~~ 362 (381)
T KOG1512|consen 309 WKCSSCELCRICLGPVI---------ESEHLFCDVCDRGPHTLCVGLQDLPRGEWICDMRCRE 362 (381)
T ss_pred hhhcccHhhhccCCccc---------chheeccccccCCCCccccccccccCccchhhhHHHH
Confidence 44457788999997543 56899999999999999999999999999998 4643
No 58
>KOG0383 consensus Predicted helicase [General function prediction only]
Probab=97.70 E-value=2.3e-05 Score=94.68 Aligned_cols=49 Identities=39% Similarity=0.924 Sum_probs=42.6
Q ss_pred cCCccccccccccCCcCcccccCCCCcEEeccCCCCccccccCC--CCCcCCCCccccccccc
Q 002320 543 NGLGIICHCCNSEVSPSQFEAHADGGNLLPCDGCPRAFHKECAS--LSSIPQGDWYCKYCQNM 603 (936)
Q Consensus 543 ~~~~i~C~~C~~evSpS~FE~hadgG~Ll~CD~Cp~afH~~CL~--L~~vP~g~W~Cp~C~~~ 603 (936)
..+...|.+|. ++|++++||.|+.+||..|++ +...|.++|.|+.|...
T Consensus 44 ~~~~e~c~ic~------------~~g~~l~c~tC~~s~h~~cl~~pl~~~p~~~~~c~Rc~~p 94 (696)
T KOG0383|consen 44 DAEQEACRICA------------DGGELLWCDTCPASFHASCLGPPLTPQPNGEFICPRCFCP 94 (696)
T ss_pred hhhhhhhhhhc------------CCCcEEEeccccHHHHHHccCCCCCcCCccceeeeeeccC
Confidence 35667899999 799999999999999999997 66788888999999554
No 59
>PRK10562 putative acetyltransferase; Provisional
Probab=97.67 E-value=0.00017 Score=70.14 Aligned_cols=76 Identities=11% Similarity=0.095 Sum_probs=59.1
Q ss_pred EEEEeCCeEEEEEEEEEeccceeEeeeeeeccCCcCCChhHHHHHHHHHHhhhcCceEEEecchhhHHHHhHhccCcEEc
Q 002320 807 AILTVNSSVVSAGILRVFGQEVAELPLVATSKINHGKGYFQLLFACIEKLLSFLRVKSIVLPAAEEAESIWTDKFGFKKI 886 (936)
Q Consensus 807 ~VL~~~~~vVsaA~lri~g~~~AEIp~vAT~~~~RgqG~gr~L~~~IE~~L~~lgV~~LvlpA~~ea~~~w~~kfGF~~i 886 (936)
+++..++++||.+.+.. ...+..+++.++|||+|+|+.||+.+++.+..+. -.+...-..+..||++ +||+.+
T Consensus 51 ~v~~~~~~~iG~~~~~~----~~~i~~~~v~~~~rg~G~g~~ll~~~~~~~~~~~--~~v~~~N~~s~~~y~k-~Gf~~~ 123 (145)
T PRK10562 51 WVWEEDGKLLGFVSVLE----GRFVGALFVAPKAVRRGIGKALMQHVQQRYPHLS--LEVYQKNQRAVNFYHA-QGFRIV 123 (145)
T ss_pred EEEEECCEEEEEEEEee----ccEEEEEEECHHHcCCCHHHHHHHHHHhhCCeEE--EEEEcCChHHHHHHHH-CCCEEc
Confidence 45567789999988743 2467789999999999999999999999765432 2233456678999999 999998
Q ss_pred CHH
Q 002320 887 DPE 889 (936)
Q Consensus 887 ~~~ 889 (936)
+..
T Consensus 124 ~~~ 126 (145)
T PRK10562 124 DSA 126 (145)
T ss_pred ccc
Confidence 863
No 60
>PF00628 PHD: PHD-finger; InterPro: IPR019787 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the PHD (homeodomain) zinc finger domain [,], which is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in chromatin-mediated transcriptional regulation. The PHD finger motif is reminiscent of, but distinct from the C3HC4 type RING finger. The function of this domain is not yet known but in analogy with the LIM domain it could be involved in protein-protein interaction and be important for the assembly or activity of multicomponent complexes involved in transcriptional activation or repression. Alternatively, the interactions could be intra-molecular and be important in maintaining the structural integrity of the protein. In similarity to the RING finger and the LIM domain, the PHD finger is thought to bind two zinc ions. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0005515 protein binding; PDB: 3ZVY_A 2LGG_A 3SOW_A 3SOU_B 3ASL_A 3ASK_A 3ZVZ_B 3T6R_A 2LGK_A 3SOX_B ....
Probab=97.65 E-value=2.5e-05 Score=64.00 Aligned_cols=46 Identities=41% Similarity=1.174 Sum_probs=37.1
Q ss_pred ccccccccCCcCcccccCCCCcEEeccCCCCccccccCCCC----CcCCCCcccccccc
Q 002320 548 ICHCCNSEVSPSQFEAHADGGNLLPCDGCPRAFHKECASLS----SIPQGDWYCKYCQN 602 (936)
Q Consensus 548 ~C~~C~~evSpS~FE~hadgG~Ll~CD~Cp~afH~~CL~L~----~vP~g~W~Cp~C~~ 602 (936)
+|.+|++. .+.++++.|+.|.+.||..|+++. ..+.+.|+|+.|..
T Consensus 1 ~C~vC~~~---------~~~~~~i~C~~C~~~~H~~C~~~~~~~~~~~~~~w~C~~C~~ 50 (51)
T PF00628_consen 1 YCPVCGQS---------DDDGDMIQCDSCNRWYHQECVGPPEKAEEIPSGDWYCPNCRP 50 (51)
T ss_dssp EBTTTTSS---------CTTSSEEEBSTTSCEEETTTSTSSHSHHSHHSSSBSSHHHHH
T ss_pred eCcCCCCc---------CCCCCeEEcCCCChhhCcccCCCChhhccCCCCcEECcCCcC
Confidence 47888861 258899999999999999999854 34556999999974
No 61
>PRK15130 spermidine N1-acetyltransferase; Provisional
Probab=97.64 E-value=0.00027 Score=71.47 Aligned_cols=81 Identities=17% Similarity=0.137 Sum_probs=66.1
Q ss_pred EEEEEeCCeEEEEEEEEEec--cceeEeeeeeeccCCcCCChhHHHHHHHHHHhh-hcCceEEEecc---hhhHHHHhHh
Q 002320 806 CAILTVNSSVVSAGILRVFG--QEVAELPLVATSKINHGKGYFQLLFACIEKLLS-FLRVKSIVLPA---AEEAESIWTD 879 (936)
Q Consensus 806 ~~VL~~~~~vVsaA~lri~g--~~~AEIp~vAT~~~~RgqG~gr~L~~~IE~~L~-~lgV~~LvlpA---~~ea~~~w~~ 879 (936)
.++++.++++||.+.+.... ...+++. +++.++|||+|+|+.++..+.+.+. .+|++++++.. -..+..+|.+
T Consensus 59 ~~~i~~~g~~iG~~~~~~~~~~~~~~~~~-~~v~~~~~g~G~g~~l~~~l~~~~~~~~~~~rv~~~v~~~N~~s~~~yek 137 (186)
T PRK15130 59 RFVVECDGEKAGLVELVEINHVHRRAEFQ-IIISPEYQGKGLATRAAKLAMDYGFTVLNLYKLYLIVDKENEKAIHIYRK 137 (186)
T ss_pred EEEEEECCEEEEEEEEEeecCCCCeEEEE-EEECHHHcCCCHHHHHHHHHHHHHhhcCCceEEEEEEccCCHHHHHHHHH
Confidence 34567899999999886543 2456774 8999999999999999999998775 68999988764 4478999999
Q ss_pred ccCcEEcCH
Q 002320 880 KFGFKKIDP 888 (936)
Q Consensus 880 kfGF~~i~~ 888 (936)
+||+..+.
T Consensus 138 -~GF~~~~~ 145 (186)
T PRK15130 138 -LGFEVEGE 145 (186)
T ss_pred -CCCEEEEE
Confidence 99998765
No 62
>PF13523 Acetyltransf_8: Acetyltransferase (GNAT) domain; PDB: 2VQY_A 2BUE_A 1V0C_A 1YK3_D 2PR8_A 2QIR_A 2PRB_A 2QML_A 2PC1_A.
Probab=97.62 E-value=0.00036 Score=68.15 Aligned_cols=86 Identities=15% Similarity=0.130 Sum_probs=67.1
Q ss_pred CCcEEEEEEeCCeEEEEEEEEE------eccceeEeeeeeeccCCcCCChhHHHHHHHHHHhhhc-CceEEEecchh---
Q 002320 802 GGMYCAILTVNSSVVSAGILRV------FGQEVAELPLVATSKINHGKGYFQLLFACIEKLLSFL-RVKSIVLPAAE--- 871 (936)
Q Consensus 802 ~GfY~~VL~~~~~vVsaA~lri------~g~~~AEIp~vAT~~~~RgqG~gr~L~~~IE~~L~~l-gV~~LvlpA~~--- 871 (936)
.+.+.+|++.+|++||.+.+.- .......+-.+++.++|||+|+|+.++.++.+.+..- +++++++....
T Consensus 46 ~~~~~~v~~~dg~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rg~G~g~~~~~~~~~~~~~~~~~~~i~~~~~~~N~ 125 (152)
T PF13523_consen 46 PGHHPYVAEDDGEPIGYFEIYWPDEDYDADDGDRGIHRLIVDPEYRGQGLGKAMLRALIEFLFEDPGVDRIVLDPHEDNT 125 (152)
T ss_dssp TTEEEEEEEETTEEEEEEEEEEGGGSS---TTEEEEEEEESTGGGTTSSHHHHHHHHHHHHHHTSTT--EEEEEEBTT-H
T ss_pred CCceEEEEEECCEEEEEEEEecccccccCCCCEEEEeeeeechhhcCCCHHHHHHHHHHHHHHhCCCCCEEEEecCcCCH
Confidence 4566788899999999887642 1345677999999999999999999999999887765 89999988655
Q ss_pred hHHHHhHhccCcEEcCH
Q 002320 872 EAESIWTDKFGFKKIDP 888 (936)
Q Consensus 872 ea~~~w~~kfGF~~i~~ 888 (936)
.++..|++ +||+.+++
T Consensus 126 ~~~~~~~k-~GF~~~g~ 141 (152)
T PF13523_consen 126 RAIRLYEK-AGFRKVGE 141 (152)
T ss_dssp HHHHHHHH-TT-EEEEE
T ss_pred HHHHHHHH-cCCEEeeE
Confidence 67889998 99998764
No 63
>PF13718 GNAT_acetyltr_2: GNAT acetyltransferase 2; PDB: 2ZPA_B.
Probab=97.59 E-value=0.00037 Score=73.18 Aligned_cols=88 Identities=16% Similarity=0.133 Sum_probs=63.3
Q ss_pred ccCCcEEEEEEeCC--eEEEEEEEEEec-------------------------------------cceeEeeeeeeccCC
Q 002320 800 EFGGMYCAILTVNS--SVVSAGILRVFG-------------------------------------QEVAELPLVATSKIN 840 (936)
Q Consensus 800 df~GfY~~VL~~~~--~vVsaA~lri~g-------------------------------------~~~AEIp~vAT~~~~ 840 (936)
|=.++..++|..++ +|++|+-+-..| -.-+.|-+|||+|++
T Consensus 23 DaP~h~l~~l~~~~~p~il~~~~v~~EG~l~~~l~~~i~~g~rRp~G~LiP~~L~~~~~~~~f~~l~g~RIvRIAvhP~~ 102 (196)
T PF13718_consen 23 DAPNHRLFVLLQPGDPDILGVAQVALEGGLSKELIEAILSGGRRPKGHLIPQTLAQHFGDPEFAQLSGARIVRIAVHPDL 102 (196)
T ss_dssp H-TTEEEEEEE-SS--SEEEEEEEEEEE---HHHHHHHHTTS---SS-HHHHHHHHHSS-TTGGGSEEEEEEEEEE-CCC
T ss_pred cCCcceeehhccCCCceEEEEEEEEecCCCCHHHHHHHHhCCCCCCCCCHHHHHHHHhCCHHHHhhcceeEEEEEEChhh
Confidence 33456678888888 999999887766 236789999999999
Q ss_pred cCCChhHHHHHHHHHHh-------------------------hhcCceEEEec--chhhHHHHhHhccCcEEcCH
Q 002320 841 HGKGYFQLLFACIEKLL-------------------------SFLRVKSIVLP--AAEEAESIWTDKFGFKKIDP 888 (936)
Q Consensus 841 RgqG~gr~L~~~IE~~L-------------------------~~lgV~~Lvlp--A~~ea~~~w~~kfGF~~i~~ 888 (936)
|++|||+.|++.+++.+ ...+|..|=.. +.++...||.+ .||.++-=
T Consensus 103 q~~G~Gs~lL~~l~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~vDylGtSFG~t~~Ll~FW~k-~gf~pv~l 176 (196)
T PF13718_consen 103 QRMGYGSRLLQQLEQYAEGKIPSLSEQDKEKLPPLLSKLSDRRPPGVDYLGTSFGATPELLKFWQK-NGFVPVYL 176 (196)
T ss_dssp -SSSHHHHHHHHHHHT-----------------------------S-SEEEEEEE--HHHHHHHHC-TT-EEEEE
T ss_pred hcCCHHHHHHHHHHHHHhhhcccccccccccccccccccccccccCCCEEEeccCCCHHHHHHHHH-CCcEEEEE
Confidence 99999999999999999 46677765544 67888999999 99998743
No 64
>TIGR03585 PseH pseudaminic acid biosynthesis N-acetyl transferase. Sequences in this family are members of the pfam00583 (GNAT) superfamily of acetyltransferases and are proposed to perform a N-acetylation step in the process of pseudaminic acid biosynthesis in Campylobacter species. This gene is commonly observed in apparent operons with other genes responsible for the biosynthesis of pseudaminic acid and as a component of flagellar and exopolysaccharide biosynthesis loci. Significantly, many genomes containing other components of this pathway lack this gene, indicating that some other N-acetyl transferases may be incolved and/or the step is optional, resulting in a non-acetylated pseudaminic acid variant sugar.
Probab=97.57 E-value=0.00051 Score=66.79 Aligned_cols=81 Identities=14% Similarity=0.109 Sum_probs=66.2
Q ss_pred EEEEeCCeEEEEEEEEEec--cceeEeeeeeeccCCcCCChhHHHHHHHHHHhh-hcCceEEEe---cchhhHHHHhHhc
Q 002320 807 AILTVNSSVVSAGILRVFG--QEVAELPLVATSKINHGKGYFQLLFACIEKLLS-FLRVKSIVL---PAAEEAESIWTDK 880 (936)
Q Consensus 807 ~VL~~~~~vVsaA~lri~g--~~~AEIp~vAT~~~~RgqG~gr~L~~~IE~~L~-~lgV~~Lvl---pA~~ea~~~w~~k 880 (936)
++++.+|++||.+.+.... ...+++... +.+.+| +|+|+.++.++++.+. .+|++++++ +.-..++.+|.+
T Consensus 54 ~~~~~~g~~vG~~~~~~~~~~~~~~~~g~~-~~~~~~-~G~g~~~~~~~~~~a~~~~~~~~i~~~v~~~N~~s~~~y~k- 130 (156)
T TIGR03585 54 WIVCQESRPIGVISFTDINLVHKSAFWGIY-ANPFCK-PGVGSVLEEAALEYAFEHLGLHKLSLEVLEFNNKALKLYEK- 130 (156)
T ss_pred EEEEECCEEEEEEEEEecChhhCeEEEEEE-eChhhh-cCchHHHHHHHHHHHHhhCCeeEEEEEEeccCHHHHHHHHH-
Confidence 4557789999999987655 456788765 889999 9999999999999977 479999976 456678999999
Q ss_pred cCcEEcCHHH
Q 002320 881 FGFKKIDPEL 890 (936)
Q Consensus 881 fGF~~i~~~~ 890 (936)
+||+.++...
T Consensus 131 ~Gf~~~g~~~ 140 (156)
T TIGR03585 131 FGFEREGVFR 140 (156)
T ss_pred cCCeEeeeeh
Confidence 9999887543
No 65
>KOG1244 consensus Predicted transcription factor Requiem/NEURO-D4 [Transcription]
Probab=97.56 E-value=2.8e-05 Score=83.53 Aligned_cols=51 Identities=31% Similarity=0.813 Sum_probs=40.9
Q ss_pred CccccccccccCCcCcccccCCCCcEEeccCCCCccccccCC--CCCcCCCCcccccccccc
Q 002320 545 LGIICHCCNSEVSPSQFEAHADGGNLLPCDGCPRAFHKECAS--LSSIPQGDWYCKYCQNMF 604 (936)
Q Consensus 545 ~~i~C~~C~~evSpS~FE~hadgG~Ll~CD~Cp~afH~~CL~--L~~vP~g~W~Cp~C~~~~ 604 (936)
+.-.|.+|+... ..++|++||.|+++||++||. +.+.|+|.|.|..|...+
T Consensus 280 eck~csicgtse---------nddqllfcddcdrgyhmyclsppm~eppegswsc~KOG~~~ 332 (336)
T KOG1244|consen 280 ECKYCSICGTSE---------NDDQLLFCDDCDRGYHMYCLSPPMVEPPEGSWSCHLCLEEL 332 (336)
T ss_pred ecceeccccCcC---------CCceeEeecccCCceeeEecCCCcCCCCCCchhHHHHHHHH
Confidence 344566776421 467999999999999999996 678899999999997654
No 66
>TIGR01686 FkbH FkbH-like domain. The C-terminal portion of this domain is unique to this family (by BLAST).
Probab=97.55 E-value=0.00026 Score=78.81 Aligned_cols=82 Identities=11% Similarity=0.037 Sum_probs=68.4
Q ss_pred CcEEEEEEe---CCeEEEEEEEEEeccceeEeeeeeeccCCcCCChhHHHHHHHHHHhhhcCceEEEecc-----hhhHH
Q 002320 803 GMYCAILTV---NSSVVSAGILRVFGQEVAELPLVATSKINHGKGYFQLLFACIEKLLSFLRVKSIVLPA-----AEEAE 874 (936)
Q Consensus 803 GfY~~VL~~---~~~vVsaA~lri~g~~~AEIp~vAT~~~~RgqG~gr~L~~~IE~~L~~lgV~~LvlpA-----~~ea~ 874 (936)
..|++.+.. ++.+||.+.++.. .+.++|-.+++++.+||+|+|+.||..+++.++..|++.+++.. -..|.
T Consensus 230 ~~~~~~~~d~~gd~givG~~~~~~~-~~~~~I~~l~vs~r~~grGig~~Ll~~l~~~a~~~G~~~i~l~v~~~~~N~~A~ 308 (320)
T TIGR01686 230 EIVTVSMSDRFGDSGIIGIFVFEKK-EGNLFIDDLCMSCRALGRGVETRMLRWLFEQALDLGNHNARLYYRRTERNMPFL 308 (320)
T ss_pred CEEEEEEEecCCCCceEEEEEEEec-CCcEEEEEEEEcHhHhcCcHHHHHHHHHHHHHHHcCCCeEEEEEeeCCCchHHH
Confidence 355555443 5689999988764 46789999999999999999999999999999999999988854 35789
Q ss_pred HHhHhccCcEEc
Q 002320 875 SIWTDKFGFKKI 886 (936)
Q Consensus 875 ~~w~~kfGF~~i 886 (936)
.||.+ +||...
T Consensus 309 ~fY~~-~GF~~~ 319 (320)
T TIGR01686 309 SFYEQ-IGFEDE 319 (320)
T ss_pred HHHHH-cCCccC
Confidence 99998 999854
No 67
>KOG1473 consensus Nucleosome remodeling factor, subunit NURF301/BPTF [Chromatin structure and dynamics; Transcription]
Probab=97.55 E-value=1.7e-05 Score=97.36 Aligned_cols=127 Identities=25% Similarity=0.395 Sum_probs=83.8
Q ss_pred CCccccccccccCCcCcccccCCCCcEEeccCCCCccccccCC--CCCcCCCCccccccccccccccccccccccccccc
Q 002320 544 GLGIICHCCNSEVSPSQFEAHADGGNLLPCDGCPRAFHKECAS--LSSIPQGDWYCKYCQNMFERKRFLQHDANAVEAGR 621 (936)
Q Consensus 544 ~~~i~C~~C~~evSpS~FE~hadgG~Ll~CD~Cp~afH~~CL~--L~~vP~g~W~Cp~C~~~~~~e~~v~~n~~aia~Gr 621 (936)
.-+++|..|. +.|+++||..||+.||..|.. .-.+|...|.|--|... +. + |.
T Consensus 342 ~~ddhcrf~~------------d~~~~lc~Et~prvvhlEcv~hP~~~~~s~~~e~evc~~h--kv-------n----gv 396 (1414)
T KOG1473|consen 342 EYDDHCRFCH------------DLGDLLCCETCPRVVHLECVFHPRFAVPSAFWECEVCNIH--KV-------N----GV 396 (1414)
T ss_pred eecccccccC------------cccceeecccCCceEEeeecCCccccCCCccchhhhhhhh--cc-------C----cc
Confidence 4578999999 799999999999999999996 56789999999999742 11 1 11
Q ss_pred ccccCchhhccchheeecc--------cccccCCccccccCCCCCCCCCCCCceeeCCC-cCcccCC-CccccCcCCccc
Q 002320 622 VSGVDSVEQITKRCIRIVK--------NLEAELSGCLLCRGCDFSKSGFGPRTILLCDQ-CEREFHV-GCLKKHKMADLR 691 (936)
Q Consensus 622 ~~Gvd~ieqi~~rciR~vk--------d~e~e~~~C~iC~~~d~s~sg~~~g~LI~CDq-C~rayHv-~CL~p~~l~~L~ 691 (936)
+.++-+.++- .-.+|+.. ..-....-|.+|+. +++++.|+. |++.||. .||+..- --.
T Consensus 397 vd~vl~~~K~-~~~iR~~~iG~dr~gr~ywfi~rrl~Ie~~---------det~l~yysT~pqly~ll~cLd~~~--~e~ 464 (1414)
T KOG1473|consen 397 VDCVLPPSKN-VDSIRHTPIGRDRYGRKYWFISRRLRIEGM---------DETLLWYYSTCPQLYHLLRCLDRTY--VEM 464 (1414)
T ss_pred cccccChhhc-ccceeccCCCcCccccchhceeeeeEEecC---------CCcEEEEecCcHHHHHHHHHhchHH--HHH
Confidence 1111111110 00122210 01112234999985 578999997 9999999 9997421 123
Q ss_pred CCCCCcceecCCchhhH
Q 002320 692 ELPKGKWFCCMDCSRIN 708 (936)
Q Consensus 692 evPeg~WfC~~~C~~I~ 708 (936)
.++.+-|+| .+|-.-+
T Consensus 465 ~L~d~i~~~-~ee~~rq 480 (1414)
T KOG1473|consen 465 YLCDGIWER-REEIIRQ 480 (1414)
T ss_pred hhccchhhh-HHHHHHh
Confidence 578899999 7886433
No 68
>TIGR01211 ELP3 histone acetyltransferase, ELP3 family. The Saccharomyces cerevisiae member YPL086C has been characterized in vitro as an N-terminal acetyltransferase for all four core histones. It is a component of the RNA polymerase II holoenzyme, designated Elp3p for Elongator Protein 3. Members of this family are found in eukaryotes and archaea. These proteins are part of the larger set of GNAT acetyltransferases.
Probab=97.54 E-value=0.00026 Score=84.03 Aligned_cols=76 Identities=16% Similarity=0.210 Sum_probs=63.7
Q ss_pred CCeEEEEEEEEEecccee-----------Eeeeeee--------ccCCcCCChhHHHHHHHHHHhhhcCceEEEecchhh
Q 002320 812 NSSVVSAGILRVFGQEVA-----------ELPLVAT--------SKINHGKGYFQLLFACIEKLLSFLRVKSIVLPAAEE 872 (936)
Q Consensus 812 ~~~vVsaA~lri~g~~~A-----------EIp~vAT--------~~~~RgqG~gr~L~~~IE~~L~~lgV~~LvlpA~~e 872 (936)
++.+||-.+++....+.. |+-..++ .++|||+|+|+.||+.+|+.++..|+..+++.+...
T Consensus 422 ~~~l~G~lrlr~~~~~~~~~~~~~~a~IrelhV~G~~~~~~~~~~~~~rg~GiG~~Ll~~ae~~Ar~~G~~~i~v~s~~~ 501 (522)
T TIGR01211 422 NDILIGFLRLRFPSEPAHRKEVDATALVRELHVYGSEVPIGERGDDEWQHRGYGRRLLEEAERIAAEEGSEKILVISGIG 501 (522)
T ss_pred CCeEEEEEEEecCcccccccccCCCceEEEEEEeeeeccccccCChhHhCcCHHHHHHHHHHHHHHHCCCCEEEEeeCch
Confidence 578888888887654322 5554444 578999999999999999999999999999999999
Q ss_pred HHHHhHhccCcEEcCH
Q 002320 873 AESIWTDKFGFKKIDP 888 (936)
Q Consensus 873 a~~~w~~kfGF~~i~~ 888 (936)
|..||.+ +||...++
T Consensus 502 A~~FY~k-lGf~~~g~ 516 (522)
T TIGR01211 502 VREYYRK-LGYELDGP 516 (522)
T ss_pred HHHHHHH-CCCEEEcc
Confidence 9999998 99998765
No 69
>PHA01807 hypothetical protein
Probab=97.54 E-value=0.0002 Score=72.34 Aligned_cols=76 Identities=7% Similarity=-0.024 Sum_probs=60.4
Q ss_pred cEEEEEEeCCeEEEEEEEEEecc----ceeEeeeeeeccCCcCCChhHHHHHHHHHHhhhcCceEEEecchh---hHHHH
Q 002320 804 MYCAILTVNSSVVSAGILRVFGQ----EVAELPLVATSKINHGKGYFQLLFACIEKLLSFLRVKSIVLPAAE---EAESI 876 (936)
Q Consensus 804 fY~~VL~~~~~vVsaA~lri~g~----~~AEIp~vAT~~~~RgqG~gr~L~~~IE~~L~~lgV~~LvlpA~~---ea~~~ 876 (936)
.+.++++.++++||.+.+..... .+.+|-.+.|.|+|||+|+|+.||+.+++.++..|+..|++-... .|..+
T Consensus 53 ~~~lva~~dg~lvG~~~l~~~~~~~~~~i~~l~~lYV~pe~RG~GiG~~Ll~~~~~~Ar~~G~~~l~l~v~~~n~~a~~~ 132 (153)
T PHA01807 53 RTELLVFRDGKLAGIAVLVFEDDPHVGPCLGVQWQYVLPEYRNAGVAREFLRELIRLAGEGNLPLIAFSHREGEGRYTIH 132 (153)
T ss_pred ceEEEEEECCEEEEEEEEEcCCCcceeeeccceeEEECHHHcCCCHHHHHHHHHHHHHHHCCCCEEEEEecCCcHHHHHH
Confidence 33366678999999999865432 234455579999999999999999999999999999998877544 56778
Q ss_pred hHh
Q 002320 877 WTD 879 (936)
Q Consensus 877 w~~ 879 (936)
|.+
T Consensus 133 y~~ 135 (153)
T PHA01807 133 YRR 135 (153)
T ss_pred HHh
Confidence 887
No 70
>smart00249 PHD PHD zinc finger. The plant homeodomain (PHD) finger is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in epigenetics and chromatin-mediated transcriptional regulation. The PHD finger binds two zinc ions using the so-called 'cross-brace' motif and is thus structurally related to the KOG3397 consensus Acetyltransferases [General function prediction only]
Probab=97.37 E-value=0.00025 Score=72.44 Aligned_cols=83 Identities=19% Similarity=0.279 Sum_probs=65.3
Q ss_pred EEEEEEe--CCeEEEEEEEEEec--cceeEeeeeeeccCCcCCChhHHHHHHHHHHhhhcCceEEEecchhhHHHHhHhc
Q 002320 805 YCAILTV--NSSVVSAGILRVFG--QEVAELPLVATSKINHGKGYFQLLFACIEKLLSFLRVKSIVLPAAEEAESIWTDK 880 (936)
Q Consensus 805 Y~~VL~~--~~~vVsaA~lri~g--~~~AEIp~vAT~~~~RgqG~gr~L~~~IE~~L~~lgV~~LvlpA~~ea~~~w~~k 880 (936)
.+.+|.. +.+||+-++|-... ...--+-.|.|.+.+||+|||+.||+.+|..++..|++.+.|.+.++ ..||++
T Consensus 56 ~sL~Ll~E~~~~VigH~rLS~i~n~~~al~VEsVVV~k~~RG~GFGk~lMk~~E~~~R~~gf~~~yLsT~DQ-~~FYe~- 133 (225)
T KOG3397|consen 56 MSLLLLNEENDEVLGHSRLSHLPNRDHALWVESVVVKKDQRGLGFGKFLMKSTEKWMREKGFNEAYLSTDDQ-CRFYES- 133 (225)
T ss_pred eeeeeecccccceeeeeccccCCCCCceeEEEEEEEehhhccccHHHHHHHHHHHHHHHhhhhheeeecccc-hhhhhh-
Confidence 3455544 35666666654333 24556778999999999999999999999999999999999998876 479999
Q ss_pred cCcEEcCHH
Q 002320 881 FGFKKIDPE 889 (936)
Q Consensus 881 fGF~~i~~~ 889 (936)
+||+.-+.-
T Consensus 134 lGYe~c~Pi 142 (225)
T KOG3397|consen 134 LGYEKCDPI 142 (225)
T ss_pred hcccccCce
Confidence 999976663
No 72
>COG5034 TNG2 Chromatin remodeling protein, contains PhD zinc finger [Chromatin structure and dynamics]
Probab=97.31 E-value=0.00024 Score=76.16 Aligned_cols=49 Identities=39% Similarity=1.068 Sum_probs=40.6
Q ss_pred cCCccccccccccCCcCcccccCCCCcEEeccC--CCCc-cccccCCCCCcCCCCcccccccc
Q 002320 543 NGLGIICHCCNSEVSPSQFEAHADGGNLLPCDG--CPRA-FHKECASLSSIPQGDWYCKYCQN 602 (936)
Q Consensus 543 ~~~~i~C~~C~~evSpS~FE~hadgG~Ll~CD~--Cp~a-fH~~CL~L~~vP~g~W~Cp~C~~ 602 (936)
.++.-+|. |++. ..|+|+-||+ |.+- ||+.|++|...|.|.|||+.|+.
T Consensus 218 e~e~lYCf-Cqqv----------SyGqMVaCDn~nCkrEWFH~~CVGLk~pPKG~WYC~eCk~ 269 (271)
T COG5034 218 EGEELYCF-CQQV----------SYGQMVACDNANCKREWFHLECVGLKEPPKGKWYCPECKK 269 (271)
T ss_pred cCceeEEE-eccc----------ccccceecCCCCCchhheeccccccCCCCCCcEeCHHhHh
Confidence 45666775 4432 4799999994 9996 99999999999999999999974
No 73
>KOG1973 consensus Chromatin remodeling protein, contains PHD Zn-finger [Chromatin structure and dynamics]
Probab=97.24 E-value=0.00014 Score=79.92 Aligned_cols=49 Identities=35% Similarity=0.929 Sum_probs=40.8
Q ss_pred CCccccccccccCCcCcccccCCCCcEEeccC--CC-CccccccCCCCCcCCCCccccccccc
Q 002320 544 GLGIICHCCNSEVSPSQFEAHADGGNLLPCDG--CP-RAFHKECASLSSIPQGDWYCKYCQNM 603 (936)
Q Consensus 544 ~~~i~C~~C~~evSpS~FE~hadgG~Ll~CD~--Cp-~afH~~CL~L~~vP~g~W~Cp~C~~~ 603 (936)
.+-.+|.|... ..|+|+-||. |+ .=||+.|++|..-|.|.|||+.|...
T Consensus 217 ~e~~yC~Cnqv-----------syg~Mi~CDn~~C~~eWFH~~CVGL~~~PkgkWyC~~C~~~ 268 (274)
T KOG1973|consen 217 DEPTYCICNQV-----------SYGKMIGCDNPGCPIEWFHFTCVGLKTKPKGKWYCPRCKAE 268 (274)
T ss_pred CCCEEEEeccc-----------ccccccccCCCCCCcceEEEeccccccCCCCcccchhhhhh
Confidence 35567776632 4899999997 99 56999999999999999999999853
No 74
>COG3153 Predicted acetyltransferase [General function prediction only]
Probab=97.24 E-value=0.001 Score=68.62 Aligned_cols=135 Identities=14% Similarity=0.152 Sum_probs=92.3
Q ss_pred HHHHHHHHHhhcCCCcccCCcCCCcchhhhccCCCCcccCCcEEEEEEeCCeEEEEEEEEEec-----cceeEeeeeeec
Q 002320 763 LLSQAVAIFHDCFDPIVDSISGRDLIPSMVYGNLRGQEFGGMYCAILTVNSSVVSAGILRVFG-----QEVAELPLVATS 837 (936)
Q Consensus 763 ~La~Al~If~EcFdPiid~rSgrDLIp~MVy~~~~r~df~GfY~~VL~~~~~vVsaA~lri~g-----~~~AEIp~vAT~ 837 (936)
-....-++.++.|.|- ...+++..+-.+ .+.++ --.+|-..++++|+...+--.. ...-=|-.+||+
T Consensus 13 d~~~i~~~~~~aF~~~----~e~~~v~~lR~~--~~~~~--~LslVA~d~g~vvG~Il~s~v~~~g~~~~~~~LaPLaV~ 84 (171)
T COG3153 13 DIPAIEALTREAFGPG----REAKLVDKLREG--GRPDL--TLSLVAEDDGEVVGHILFSPVTVGGEELGWLGLAPLAVD 84 (171)
T ss_pred hHHHHHHHHHHHhhcc----hHHHHHHHHHhc--CCccc--ceeEEEeeCCEEEEEEEEeEEEecCcccceEEEEeEEEc
Confidence 3445566777888632 333444433222 11111 2234556779999988765432 245667889999
Q ss_pred cCCcCCChhHHHHHHHHHHhhhcCceEEEecchhhHHHHhHhccCcEEcCHHHHHHHHhcCCceeeeCCCeeeeecccC
Q 002320 838 KINHGKGYFQLLFACIEKLLSFLRVKSIVLPAAEEAESIWTDKFGFKKIDPELLSIYRKRCSQLVTFKGTSMLQKRVPA 916 (936)
Q Consensus 838 ~~~RgqG~gr~L~~~IE~~L~~lgV~~LvlpA~~ea~~~w~~kfGF~~i~~~~~~~~~~~~~~ll~F~gt~~LqK~l~~ 916 (936)
++|||||+|++||...++.|+..|...+++--. -.+|. +|||.......+.- +.. +|.+.+|-+.|..
T Consensus 85 p~~qg~GIG~~Lvr~~le~a~~~G~~~v~vlGd---p~YY~-rfGF~~~~~~~l~~------p~~-~~~~~fl~~~L~~ 152 (171)
T COG3153 85 PEYQGQGIGSALVREGLEALRLAGASAVVVLGD---PTYYS-RFGFEPAAGAKLYA------PGP-VPDERFLALELGD 152 (171)
T ss_pred hhhcCCcHHHHHHHHHHHHHHHCCCCEEEEecC---ccccc-ccCcEEcccccccc------CCC-CCCceEEEEEccC
Confidence 999999999999999999999999999888766 45674 49999988765411 223 6777888887765
No 75
>PRK10809 ribosomal-protein-S5-alanine N-acetyltransferase; Provisional
Probab=97.24 E-value=0.0013 Score=67.00 Aligned_cols=83 Identities=8% Similarity=0.125 Sum_probs=65.0
Q ss_pred cEEEEEEeCCeEEEEEEEEEecc---ceeEeeeeeeccCCcCCChhHHHHHHHHHHhhh-cCceEEEecchh---hHHHH
Q 002320 804 MYCAILTVNSSVVSAGILRVFGQ---EVAELPLVATSKINHGKGYFQLLFACIEKLLSF-LRVKSIVLPAAE---EAESI 876 (936)
Q Consensus 804 fY~~VL~~~~~vVsaA~lri~g~---~~AEIp~vAT~~~~RgqG~gr~L~~~IE~~L~~-lgV~~LvlpA~~---ea~~~ 876 (936)
.|.+++..++++||.+.+..... ..+||. +.+.++|||||+|+.++..+.+.+.. +|++++++.... .+..+
T Consensus 77 ~~~i~~~~~~~~iG~i~l~~~~~~~~~~~eig-~~i~~~~~G~G~~~ea~~~ll~~~~~~l~l~~i~~~v~~~N~~S~~l 155 (194)
T PRK10809 77 YFALLDPDEKEIIGVANFSNVVRGSFHACYLG-YSLGQKWQGQGLMFEALQAAIRYMQRQQHMHRIMANYMPHNKRSGDL 155 (194)
T ss_pred EEEEEECCCCeEEEEEEEEeecCCCeeeEEEE-EEECHHHcCCCHHHHHHHHHHHHHHhcCCceEEEEEeeCCCHHHHHH
Confidence 45444445789999999876542 346665 45789999999999999999999865 799998887644 67789
Q ss_pred hHhccCcEEcCH
Q 002320 877 WTDKFGFKKIDP 888 (936)
Q Consensus 877 w~~kfGF~~i~~ 888 (936)
+.+ +||...+.
T Consensus 156 ~ek-~Gf~~~g~ 166 (194)
T PRK10809 156 LAR-LGFEKEGY 166 (194)
T ss_pred HHH-CCCcEEee
Confidence 999 99997665
No 76
>PRK10151 ribosomal-protein-L7/L12-serine acetyltransferase; Provisional
Probab=97.12 E-value=0.0031 Score=63.45 Aligned_cols=81 Identities=7% Similarity=0.076 Sum_probs=63.6
Q ss_pred EEEEeCCeEEEEEEEEEecc--ceeEeeeeeeccCCcCCChhHHHHHHHHHHhh-hcCceEEEecch---hhHHHHhHhc
Q 002320 807 AILTVNSSVVSAGILRVFGQ--EVAELPLVATSKINHGKGYFQLLFACIEKLLS-FLRVKSIVLPAA---EEAESIWTDK 880 (936)
Q Consensus 807 ~VL~~~~~vVsaA~lri~g~--~~AEIp~vAT~~~~RgqG~gr~L~~~IE~~L~-~lgV~~LvlpA~---~ea~~~w~~k 880 (936)
+++..++++||.+.+..... ..+||.. .+.++|||+|||+.++.++.+.+. .+|++++.+.+. ..+..++++
T Consensus 70 ~~i~~~~~~iG~~~l~~~~~~~~~~~ig~-~i~~~~~g~G~~tea~~~l~~~~~~~~~~~ri~~~v~~~N~~S~~v~ek- 147 (179)
T PRK10151 70 FMIFKEDELIGVLSFNRIEPLNKTAYIGY-WLDESHQGQGIISQALQALIHHYAQSGELRRFVIKCRVDNPASNQVALR- 147 (179)
T ss_pred EEEEECCEEEEEEEEEeeccCCCceEEEE-EEChhhcCCcHHHHHHHHHHHHHHhhCCccEEEEEEcCCCHHHHHHHHH-
Confidence 44456899999999876543 5688876 589999999999999999888775 578999877643 346778887
Q ss_pred cCcEEcCHH
Q 002320 881 FGFKKIDPE 889 (936)
Q Consensus 881 fGF~~i~~~ 889 (936)
+||+..+..
T Consensus 148 ~Gf~~~g~~ 156 (179)
T PRK10151 148 NGFTLEGCL 156 (179)
T ss_pred CCCEEEeEe
Confidence 999987653
No 77
>COG5034 TNG2 Chromatin remodeling protein, contains PhD zinc finger [Chromatin structure and dynamics]
Probab=97.08 E-value=0.00024 Score=76.20 Aligned_cols=47 Identities=40% Similarity=1.070 Sum_probs=38.1
Q ss_pred cCCccccccCCCCCCCCCCCCceeeCC--CcCc-ccCCCccccCcCCcccCCCCCcceecCCchh
Q 002320 645 ELSGCLLCRGCDFSKSGFGPRTILLCD--QCER-EFHVGCLKKHKMADLRELPKGKWFCCMDCSR 706 (936)
Q Consensus 645 e~~~C~iC~~~d~s~sg~~~g~LI~CD--qC~r-ayHv~CL~p~~l~~L~evPeg~WfC~~~C~~ 706 (936)
+..+|+ |.+.. =|.|+-|| .|++ |||..|+ .|++.|+|.||| ++|+.
T Consensus 220 e~lYCf-CqqvS-------yGqMVaCDn~nCkrEWFH~~CV------GLk~pPKG~WYC-~eCk~ 269 (271)
T COG5034 220 EELYCF-CQQVS-------YGQMVACDNANCKREWFHLECV------GLKEPPKGKWYC-PECKK 269 (271)
T ss_pred ceeEEE-ecccc-------cccceecCCCCCchhheecccc------ccCCCCCCcEeC-HHhHh
Confidence 334565 88753 46899999 5997 7999999 589999999999 89974
No 78
>PF13302 Acetyltransf_3: Acetyltransferase (GNAT) domain; PDB: 3TTH_C 3JUW_A 2ZXV_A 2Z0Z_A 2VI7_B 3EG7_F 1YRE_C 3IGR_B 3FBU_A 2FCK_A ....
Probab=97.08 E-value=0.0032 Score=59.84 Aligned_cols=79 Identities=15% Similarity=0.173 Sum_probs=60.4
Q ss_pred cEEEEEEe--CCeEEEEEEEEEe--ccceeEeeeeeeccCCcCCChhHHHHHHHHHHh-hhcCceEEEecchh---hHHH
Q 002320 804 MYCAILTV--NSSVVSAGILRVF--GQEVAELPLVATSKINHGKGYFQLLFACIEKLL-SFLRVKSIVLPAAE---EAES 875 (936)
Q Consensus 804 fY~~VL~~--~~~vVsaA~lri~--g~~~AEIp~vAT~~~~RgqG~gr~L~~~IE~~L-~~lgV~~LvlpA~~---ea~~ 875 (936)
+|.+++.. ++++||...+... ....+||. +.+.++|||+|+|..++..+.+.+ ..+|+.++.+.... .+..
T Consensus 56 ~~~~~i~~~~~~~~iG~i~~~~~~~~~~~~eig-~~i~~~~~g~G~~~~~~~~~~~~~~~~~~~~~i~a~~~~~N~~s~~ 134 (142)
T PF13302_consen 56 YYYFAIEDKDDGEIIGFIGLYNIDKNNNWAEIG-YWIGPDYRGKGYGTEALKLLLDWAFEELGLHRIIATVMADNEASRR 134 (142)
T ss_dssp EEEEEEEETTTTEEEEEEEEEEEETTTTEEEEE-EEEEGGGTTSSHHHHHHHHHHHHHHHTSTSSEEEEEEETT-HHHHH
T ss_pred ceEEEEEeccCCceEEEeeeeecccCCCccccc-cchhHHHHhhhHHHHHHHHHHHHHHhcCCcEEEEEEECcCCHHHHH
Confidence 44444443 4579999998443 36899999 668888999999999999999998 79999998877544 4455
Q ss_pred HhHhccCcE
Q 002320 876 IWTDKFGFK 884 (936)
Q Consensus 876 ~w~~kfGF~ 884 (936)
++.+ +||+
T Consensus 135 ~~~k-~GF~ 142 (142)
T PF13302_consen 135 LLEK-LGFE 142 (142)
T ss_dssp HHHH-TT-E
T ss_pred HHHH-cCCC
Confidence 6666 9985
No 79
>KOG1973 consensus Chromatin remodeling protein, contains PHD Zn-finger [Chromatin structure and dynamics]
Probab=97.04 E-value=0.00022 Score=78.38 Aligned_cols=35 Identities=40% Similarity=1.057 Sum_probs=31.2
Q ss_pred CCceeeCCC--cC-cccCCCccccCcCCcccCCCCCcceecCCch
Q 002320 664 PRTILLCDQ--CE-REFHVGCLKKHKMADLRELPKGKWFCCMDCS 705 (936)
Q Consensus 664 ~g~LI~CDq--C~-rayHv~CL~p~~l~~L~evPeg~WfC~~~C~ 705 (936)
-+.||-||. |+ .|||..|+ .|+..|.|+||| +.|.
T Consensus 229 yg~Mi~CDn~~C~~eWFH~~CV------GL~~~PkgkWyC-~~C~ 266 (274)
T KOG1973|consen 229 YGKMIGCDNPGCPIEWFHFTCV------GLKTKPKGKWYC-PRCK 266 (274)
T ss_pred cccccccCCCCCCcceEEEecc------ccccCCCCcccc-hhhh
Confidence 578999998 99 99999999 578889999999 5885
No 80
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=97.04 E-value=0.00022 Score=85.25 Aligned_cols=49 Identities=33% Similarity=0.840 Sum_probs=39.9
Q ss_pred CccccccccccCCcCcccccCCCCcEEeccCCCCc-cccccCC--CCCcCCCCcccccccc
Q 002320 545 LGIICHCCNSEVSPSQFEAHADGGNLLPCDGCPRA-FHKECAS--LSSIPQGDWYCKYCQN 602 (936)
Q Consensus 545 ~~i~C~~C~~evSpS~FE~hadgG~Ll~CD~Cp~a-fH~~CL~--L~~vP~g~W~Cp~C~~ 602 (936)
+...|.+|... ...+.||+||.|..+ ||.+||+ +.++|-+.|||++|.-
T Consensus 214 E~~~C~IC~~~---------DpEdVLLLCDsCN~~~YH~YCLDPdl~eiP~~eWYC~NC~d 265 (1134)
T KOG0825|consen 214 EEVKCDICTVH---------DPEDVLLLCDSCNKVYYHVYCLDPDLSESPVNEWYCTNCSL 265 (1134)
T ss_pred ccccceeeccC---------ChHHhheeecccccceeeccccCcccccccccceecCcchh
Confidence 34568889842 235688999999999 9999997 6779999999999953
No 81
>KOG0957 consensus PHD finger protein [General function prediction only]
Probab=96.98 E-value=0.00034 Score=80.44 Aligned_cols=127 Identities=29% Similarity=0.607 Sum_probs=75.4
Q ss_pred ccccccccCCcCcccccCCCCcEEeccCCCCccccccCCC---CCcCC-------CCccccccccccc-ccccccccccc
Q 002320 548 ICHCCNSEVSPSQFEAHADGGNLLPCDGCPRAFHKECASL---SSIPQ-------GDWYCKYCQNMFE-RKRFLQHDANA 616 (936)
Q Consensus 548 ~C~~C~~evSpS~FE~hadgG~Ll~CD~Cp~afH~~CL~L---~~vP~-------g~W~Cp~C~~~~~-~e~~v~~n~~a 616 (936)
+|.+|..+-+. |-|+++-||.|+...|..|++. ..||. ..|||.-|+..+. +.--+-+|...
T Consensus 121 iCcVClg~rs~-------da~ei~qCd~CGi~VHEgCYGv~dn~si~s~~s~~stepWfCeaC~~Gvs~P~CElCPn~~G 193 (707)
T KOG0957|consen 121 ICCVCLGQRSV-------DAGEILQCDKCGINVHEGCYGVLDNVSIPSGSSDCSTEPWFCEACLYGVSLPHCELCPNRFG 193 (707)
T ss_pred EEEEeecCccc-------cccceeeccccCceecccccccccccccCCCCccCCCCchhhhhHhcCCCCCccccCCCcCC
Confidence 78889865433 7899999999999999999983 23443 3599999987543 11111112111
Q ss_pred ccc----cc---------ccccCchhhccchheeecccccc---cCCccccccCCCCCCCCCCCCceeeCC--CcCcccC
Q 002320 617 VEA----GR---------VSGVDSVEQITKRCIRIVKNLEA---ELSGCLLCRGCDFSKSGFGPRTILLCD--QCEREFH 678 (936)
Q Consensus 617 ia~----Gr---------~~Gvd~ieqi~~rciR~vkd~e~---e~~~C~iC~~~d~s~sg~~~g~LI~CD--qC~rayH 678 (936)
++. |+ +.||- ..++..+|.-.+.++.+ -...|..|...-|.+. |..|.|| .|..+||
T Consensus 194 ifKetDigrWvH~iCALYvpGVa-fg~~~~l~~Vtl~em~ysk~Gak~Cs~Ced~~fARt----Gvci~CdaGMCk~YfH 268 (707)
T KOG0957|consen 194 IFKETDIGRWVHAICALYVPGVA-FGQTHTLCGVTLEEMDYSKFGAKTCSACEDKIFART----GVCIRCDAGMCKEYFH 268 (707)
T ss_pred cccccchhhHHHHHHHhhcCccc-cccccccccccHHHhhhhhhccchhccccchhhhhc----ceeeeccchhhhhhhh
Confidence 110 01 11111 11111222222222221 1134999998776654 4678898 6999999
Q ss_pred CCccccCc
Q 002320 679 VGCLKKHK 686 (936)
Q Consensus 679 v~CL~p~~ 686 (936)
+.|.+..|
T Consensus 269 VTCAQk~G 276 (707)
T KOG0957|consen 269 VTCAQKLG 276 (707)
T ss_pred hhHHhhhc
Confidence 99998765
No 82
>COG1247 Sortase and related acyltransferases [Cell envelope biogenesis, outer membrane]
Probab=96.87 E-value=0.0048 Score=63.58 Aligned_cols=113 Identities=16% Similarity=0.177 Sum_probs=81.3
Q ss_pred CcccCCcEEEEEEeC-CeEEEEEEEEEecc-----ceeEeeeeeeccCCcCCChhHHHHHHHHHHhhhcCceEEEec--c
Q 002320 798 GQEFGGMYCAILTVN-SSVVSAGILRVFGQ-----EVAELPLVATSKINHGKGYFQLLFACIEKLLSFLRVKSIVLP--A 869 (936)
Q Consensus 798 r~df~GfY~~VL~~~-~~vVsaA~lri~g~-----~~AEIp~vAT~~~~RgqG~gr~L~~~IE~~L~~lgV~~Lvlp--A 869 (936)
...=.||+.+|++.+ |++++-|.+..|-. .++|. .|=+++++||+|+|++|+.++.+.+..+|++.++-. +
T Consensus 46 ~~~~~g~p~~V~~~~~g~v~G~a~~~~fr~r~ay~~tve~-SiYv~~~~~g~GiG~~Ll~~Li~~~~~~g~~~lva~I~~ 124 (169)
T COG1247 46 GRTRDGYPVVVAEEEDGKVLGYASAGPFRERPAYRHTVEL-SIYLDPAARGKGLGKKLLQALITEARALGVRELVAGIES 124 (169)
T ss_pred hcccCCceEEEEEcCCCeEEEEEEeeeccCccccceEEEE-EEEECcccccccHHHHHHHHHHHHHHhCCeEEEEEEEcC
Confidence 334456888888766 99999998887663 34443 345789999999999999999999999999887643 2
Q ss_pred hhhHHHHhHhccCcEEcCHHHHHHHHhcCCceeeeCCCeeeeecccC
Q 002320 870 AEEAESIWTDKFGFKKIDPELLSIYRKRCSQLVTFKGTSMLQKRVPA 916 (936)
Q Consensus 870 ~~ea~~~w~~kfGF~~i~~~~~~~~~~~~~~ll~F~gt~~LqK~l~~ 916 (936)
...|.--...+|||...+.....- ...-.+-.+.+||+.|..
T Consensus 125 ~n~aSi~lh~~~GF~~~G~~~~vg-----~k~g~wld~~~~~~~l~~ 166 (169)
T COG1247 125 DNLASIALHEKLGFEEVGTFPEVG-----DKFGRWLDLVLMQLLLEE 166 (169)
T ss_pred CCcHhHHHHHHCCCEEeccccccc-----cccceEEeeeeeehhhcc
Confidence 223444444559999998844321 134456677888887754
No 83
>KOG3216 consensus Diamine acetyltransferase [Amino acid transport and metabolism]
Probab=96.81 E-value=0.013 Score=59.23 Aligned_cols=123 Identities=16% Similarity=0.135 Sum_probs=90.4
Q ss_pred hhHHHHHHHHHHHhhcCCCcccCCcCCCcchhhhccCCCCcccCCcEEEEEEe-CCeEEEEEEEEEec-----cceeEee
Q 002320 759 ETRLLLSQAVAIFHDCFDPIVDSISGRDLIPSMVYGNLRGQEFGGMYCAILTV-NSSVVSAGILRVFG-----QEVAELP 832 (936)
Q Consensus 759 e~~~~La~Al~If~EcFdPiid~rSgrDLIp~MVy~~~~r~df~GfY~~VL~~-~~~vVsaA~lri~g-----~~~AEIp 832 (936)
+.-..|-.-++.|.++=+|... |..+|..+ -|....|.-.+.+.++. +.++||-|.+..+- .+.--|-
T Consensus 15 ~~i~rLikela~Fek~~~~v~~--te~~l~~~----~F~d~~~~~~~v~~ie~~~~~~aGf~~yf~~ystW~~k~~iYle 88 (163)
T KOG3216|consen 15 EDILRLIKELAEFEKLEDQVEA--TEENLARD----GFIDPPFKHWLVAAIETSGEVVAGFALYFNNYSTWLGKQGIYLE 88 (163)
T ss_pred HHHHHHHHHHHHHHHhccchhh--chhhhhhh----hccCCCccEEEEEEEecCCCceeEEeeeecccccccccceEEEE
Confidence 4455666677788888777644 44444433 13344455555555555 78899988876532 3455677
Q ss_pred eeeeccCCcCCChhHHHHHHHHHHhhhcCceE---EEecchhhHHHHhHhccCcEEcCH
Q 002320 833 LVATSKINHGKGYFQLLFACIEKLLSFLRVKS---IVLPAAEEAESIWTDKFGFKKIDP 888 (936)
Q Consensus 833 ~vAT~~~~RgqG~gr~L~~~IE~~L~~lgV~~---LvlpA~~ea~~~w~~kfGF~~i~~ 888 (936)
=+=++++|||+|+|+.|++.+-+.+..+|+.+ +++.--..|+.+|++ .|++..+.
T Consensus 89 DlyV~e~yR~kG~Gs~Ll~~va~~A~~~G~~rv~w~vldwN~rAi~lY~k-~gaq~l~~ 146 (163)
T KOG3216|consen 89 DLYVREQYRGKGIGSKLLKFVAEEADKLGTPRVEWVVLDWNHRAILLYEK-VGAQDLKE 146 (163)
T ss_pred eeEecchhcccChHHHHHHHHHHHHHHcCCCcEEEEEeccchhHHHHHHH-hCccccce
Confidence 78899999999999999999999999999987 466667789999999 99987765
No 84
>KOG4443 consensus Putative transcription factor HALR/MLL3, involved in embryonic development [General function prediction only]
Probab=96.77 E-value=0.00058 Score=81.12 Aligned_cols=139 Identities=24% Similarity=0.501 Sum_probs=81.8
Q ss_pred eccccccCCccccccccccCCcCcccccCCCCcEEeccCCCCccccccCC--CCCcCCCCcccccccccccccccccccc
Q 002320 537 LLEGYKNGLGIICHCCNSEVSPSQFEAHADGGNLLPCDGCPRAFHKECAS--LSSIPQGDWYCKYCQNMFERKRFLQHDA 614 (936)
Q Consensus 537 ll~G~~~~~~i~C~~C~~evSpS~FE~hadgG~Ll~CD~Cp~afH~~CL~--L~~vP~g~W~Cp~C~~~~~~e~~v~~n~ 614 (936)
+-.||-....-+|..|+.. .|...+++|+.|+-+||-+|.. ...+|.|.|+|+.|...-+....+.
T Consensus 59 l~~gWrC~~crvCe~c~~~---------gD~~kf~~Ck~cDvsyh~yc~~P~~~~v~sg~~~ckk~~~c~qc~~~lp--- 126 (694)
T KOG4443|consen 59 LSGGWRCPSCRVCEACGTT---------GDPKKFLLCKRCDVSYHCYCQKPPNDKVPSGPWLCKKCTRCRQCDSTLP--- 126 (694)
T ss_pred hcCCcccCCceeeeecccc---------CCcccccccccccccccccccCCccccccCcccccHHHHhhhhcccccc---
Confidence 3456666677778778731 2678999999999999999996 6789999999998865433222111
Q ss_pred cccccccccccCchhhccchheeecccccccCCccccccCCCCCCCCCCCCceeeCCCcCcccCCCccccCcCCc-ccCC
Q 002320 615 NAVEAGRVSGVDSVEQITKRCIRIVKNLEAELSGCLLCRGCDFSKSGFGPRTILLCDQCEREFHVGCLKKHKMAD-LREL 693 (936)
Q Consensus 615 ~aia~Gr~~Gvd~ieqi~~rciR~vkd~e~e~~~C~iC~~~d~s~sg~~~g~LI~CDqC~rayHv~CL~p~~l~~-L~ev 693 (936)
| ...+... ....|..+ .....|.+|...- .. ...-.+++|++|.++-|-.|-....+.- ...+
T Consensus 127 -----g--~s~~~~~-~~~~~~~c-----~s~~~cPvc~~~Y--~~-~e~~~~~~c~~c~rwsh~~c~~~sdd~~~q~~v 190 (694)
T KOG4443|consen 127 -----G--LSLDLQE-GYLQCAPC-----ASLSYCPVCLIVY--QD-SESLPMVCCSICQRWSHGGCDGISDDKYMQAQV 190 (694)
T ss_pred -----c--cchhhhc-cCcccccc-----cccccCchHHHhh--hh-ccchhhHHHHHhcccccCCCCccchHHHHHHhh
Confidence 1 0011100 00011111 1124577776531 11 1223458999999999999986533211 1111
Q ss_pred CCCcceecCCch
Q 002320 694 PKGKWFCCMDCS 705 (936)
Q Consensus 694 Peg~WfC~~~C~ 705 (936)
.-.+-| ..|.
T Consensus 191 -D~~~~C-S~CR 200 (694)
T KOG4443|consen 191 -DLQYKC-STCR 200 (694)
T ss_pred -hhhccc-ceee
Confidence 135677 7886
No 85
>KOG0957 consensus PHD finger protein [General function prediction only]
Probab=96.64 E-value=0.00064 Score=78.25 Aligned_cols=46 Identities=35% Similarity=0.980 Sum_probs=39.5
Q ss_pred ccccccCCCCCCCCCCCCceeeCCCcCcccCCCccccCcCCcccCCCCC----cceecCCc
Q 002320 648 GCLLCRGCDFSKSGFGPRTILLCDQCEREFHVGCLKKHKMADLRELPKG----KWFCCMDC 704 (936)
Q Consensus 648 ~C~iC~~~d~s~sg~~~g~LI~CDqC~rayHv~CL~p~~l~~L~evPeg----~WfC~~~C 704 (936)
.|.+|+++. +.-.+++||.|...||++||.| ||+.+|+. .|.| ..|
T Consensus 546 sCgiCkks~------dQHll~~CDtC~lhYHlGCL~P----PLTR~Pkk~kn~gWqC-sEC 595 (707)
T KOG0957|consen 546 SCGICKKST------DQHLLTQCDTCHLHYHLGCLSP----PLTRLPKKNKNFGWQC-SEC 595 (707)
T ss_pred eeeeeccch------hhHHHhhcchhhceeeccccCC----ccccCcccccCcceee-ccc
Confidence 499999853 4567899999999999999998 78888864 5999 899
No 86
>PF13831 PHD_2: PHD-finger; PDB: 2L43_A 2KU3_A.
Probab=96.33 E-value=0.00084 Score=52.29 Aligned_cols=34 Identities=44% Similarity=1.111 Sum_probs=20.9
Q ss_pred CcEEeccCCCCccccccCCCCCcCCC-Cccccccc
Q 002320 568 GNLLPCDGCPRAFHKECASLSSIPQG-DWYCKYCQ 601 (936)
Q Consensus 568 G~Ll~CD~Cp~afH~~CL~L~~vP~g-~W~Cp~C~ 601 (936)
+.|+.|+.|.-+.|+.|+++..+|.+ +|+|..|+
T Consensus 2 n~ll~C~~C~v~VH~~CYGv~~~~~~~~W~C~~C~ 36 (36)
T PF13831_consen 2 NPLLFCDNCNVAVHQSCYGVSEVPDGDDWLCDRCE 36 (36)
T ss_dssp CEEEE-SSS--EEEHHHHT-SS--SS-----HHH-
T ss_pred CceEEeCCCCCcCChhhCCcccCCCCCcEECCcCC
Confidence 46899999999999999999888887 79999884
No 87
>cd04718 BAH_plant_2 BAH, or Bromo Adjacent Homology domain, plant-specific sub-family with unknown function. BAH domains are found in a variety of proteins playing roles in transcriptional silencing and the remodeling of chromatin. It is assumed that in most or all of these instances the BAH domain mediates protein-protein interactions.
Probab=96.28 E-value=0.002 Score=64.83 Aligned_cols=26 Identities=42% Similarity=1.106 Sum_probs=23.6
Q ss_pred ccCCCccccCcCCcccCCCCCcceecCCchh
Q 002320 676 EFHVGCLKKHKMADLRELPKGKWFCCMDCSR 706 (936)
Q Consensus 676 ayHv~CL~p~~l~~L~evPeg~WfC~~~C~~ 706 (936)
.||+.||+| +|+++|+|+|+| +.|..
T Consensus 1 g~H~~CL~P----pl~~~P~g~W~C-p~C~~ 26 (148)
T cd04718 1 GFHLCCLRP----PLKEVPEGDWIC-PFCEV 26 (148)
T ss_pred CcccccCCC----CCCCCCCCCcCC-CCCcC
Confidence 499999998 899999999999 78973
No 88
>PF12746 GNAT_acetyltran: GNAT acetyltransferase; PDB: 3G3S_B.
Probab=96.19 E-value=0.031 Score=61.54 Aligned_cols=79 Identities=14% Similarity=-0.001 Sum_probs=56.0
Q ss_pred EEEeCCeEEEEEEEEEeccceeEeeeeeeccCCcCCChhHHHHHHHHHHhhhcCceEEEecchhhHHHHhHhccCcEEcC
Q 002320 808 ILTVNSSVVSAGILRVFGQEVAELPLVATSKINHGKGYFQLLFACIEKLLSFLRVKSIVLPAAEEAESIWTDKFGFKKID 887 (936)
Q Consensus 808 VL~~~~~vVsaA~lri~g~~~AEIp~vAT~~~~RgqG~gr~L~~~IE~~L~~lgV~~LvlpA~~ea~~~w~~kfGF~~i~ 887 (936)
++..+++||+.|.-.....+.+||- |+|.++|||+|+++++-.++......-|+.+.|--+-.....+ -.|+||+...
T Consensus 169 ~i~~~~~iVs~~~s~~~~~~~~EI~-I~T~~~yR~kGLA~~~aa~~I~~Cl~~~l~P~WDc~N~~S~~l-A~kLGf~~~~ 246 (265)
T PF12746_consen 169 CILHDGEIVSGCSSYFVYENGIEID-IETHPEYRGKGLATAVAAAFILECLENGLYPSWDCHNLASIAL-AEKLGFHFDF 246 (265)
T ss_dssp EEEETTEEEEEEEEEEEETTEEEEE-EEE-CCCTTSSHHHHHHHHHHHHHHHTT-EEE-EESSHHHHHH-HHHCT--EEE
T ss_pred EEEECCEEEEEEEEEEEECCEEEEE-EEECHHhhcCCHHHHHHHHHHHHHHHCCCCcCeeCCCHHHHHH-HHHcCCcccc
Confidence 3456899999777666667788986 7899999999999999999999999999999886542222223 3359998654
Q ss_pred H
Q 002320 888 P 888 (936)
Q Consensus 888 ~ 888 (936)
+
T Consensus 247 ~ 247 (265)
T PF12746_consen 247 E 247 (265)
T ss_dssp E
T ss_pred e
Confidence 3
No 89
>KOG0955 consensus PHD finger protein BR140/LIN-49 [General function prediction only]
Probab=96.09 E-value=0.0035 Score=79.12 Aligned_cols=53 Identities=26% Similarity=0.736 Sum_probs=42.8
Q ss_pred cCCccccccCCCCCCCCCCCCceeeCCCcCcccCCCccccCcCCcccCCCCCcceecCCchhhH
Q 002320 645 ELSGCLLCRGCDFSKSGFGPRTILLCDQCEREFHVGCLKKHKMADLRELPKGKWFCCMDCSRIN 708 (936)
Q Consensus 645 e~~~C~iC~~~d~s~sg~~~g~LI~CDqC~rayHv~CL~p~~l~~L~evPeg~WfC~~~C~~I~ 708 (936)
+...|.+|.+++. .+-+.++.||.|..++|.+|.. .+-+|+|.|+| ..|-...
T Consensus 218 ~D~~C~iC~~~~~----~n~n~ivfCD~Cnl~VHq~Cyg------i~~ipeg~WlC-r~Cl~s~ 270 (1051)
T KOG0955|consen 218 EDAVCCICLDGEC----QNSNVIVFCDGCNLAVHQECYG------IPFIPEGQWLC-RRCLQSP 270 (1051)
T ss_pred CCccceeeccccc----CCCceEEEcCCCcchhhhhccC------CCCCCCCcEee-hhhccCc
Confidence 4467999999863 3457899999999999999995 34679999999 8996433
No 90
>KOG0956 consensus PHD finger protein AF10 [General function prediction only]
Probab=95.98 E-value=0.0032 Score=75.08 Aligned_cols=50 Identities=30% Similarity=0.968 Sum_probs=42.1
Q ss_pred cCCccccccCCCCCCCCCCCCceeeCC--CcCcccCCCccccCcCCcccCCCCCcceecCCch
Q 002320 645 ELSGCLLCRGCDFSKSGFGPRTILLCD--QCEREFHVGCLKKHKMADLRELPKGKWFCCMDCS 705 (936)
Q Consensus 645 e~~~C~iC~~~d~s~sg~~~g~LI~CD--qC~rayHv~CL~p~~l~~L~evPeg~WfC~~~C~ 705 (936)
-+++|.+|.+- -|-.++.|+.|| .|..+.|..|.. +.++|.|.||| ..|.
T Consensus 4 MVGGCCVCSDE----rGWaeNPLVYCDG~nCsVAVHQaCYG------IvqVPtGpWfC-rKCe 55 (900)
T KOG0956|consen 4 MVGGCCVCSDE----RGWAENPLVYCDGHNCSVAVHQACYG------IVQVPTGPWFC-RKCE 55 (900)
T ss_pred cccceeeecCc----CCCccCceeeecCCCceeeeehhcce------eEecCCCchhh-hhhh
Confidence 35789999863 345678999999 699999999994 57899999999 9996
No 91
>cd04718 BAH_plant_2 BAH, or Bromo Adjacent Homology domain, plant-specific sub-family with unknown function. BAH domains are found in a variety of proteins playing roles in transcriptional silencing and the remodeling of chromatin. It is assumed that in most or all of these instances the BAH domain mediates protein-protein interactions.
Probab=95.67 E-value=0.0056 Score=61.70 Aligned_cols=25 Identities=40% Similarity=1.132 Sum_probs=22.7
Q ss_pred ccccccCC--CCCcCCCCccccccccc
Q 002320 579 AFHKECAS--LSSIPQGDWYCKYCQNM 603 (936)
Q Consensus 579 afH~~CL~--L~~vP~g~W~Cp~C~~~ 603 (936)
+||+.||+ |..+|+|+|+||.|...
T Consensus 1 g~H~~CL~Ppl~~~P~g~W~Cp~C~~~ 27 (148)
T cd04718 1 GFHLCCLRPPLKEVPEGDWICPFCEVE 27 (148)
T ss_pred CcccccCCCCCCCCCCCCcCCCCCcCC
Confidence 59999997 88999999999999864
No 92
>PF08444 Gly_acyl_tr_C: Aralkyl acyl-CoA:amino acid N-acyltransferase, C-terminal region; InterPro: IPR013652 This entry represents mammalian-specific glycine N-acyltransferase (also called aralkyl acyl-CoA:amino acid N-acyltransferase; 2.3.1.13 from EC). Mitochondrial acyltransferases catalyse the transfer of an acyl group from acyl-CoA to the N terminus of glycine to produce N-acylglycine. These enzymes can conjugate a multitude of substrates to form a variety of N-acylglycines. The CoA derivatives of a number of aliphatic and aromatic acids, but not phenylacetyl-CoA or (indol-3-yl)acetyl-CoA, can act as donor [, ].
Probab=95.65 E-value=0.022 Score=53.08 Aligned_cols=73 Identities=16% Similarity=0.196 Sum_probs=56.1
Q ss_pred EEeCCeEEEEEEEEEeccceeEeeeeeeccCCcCCChhHHHHHHHHHHhhhcCceEEEecch---hhHHHHhHhccCcEE
Q 002320 809 LTVNSSVVSAGILRVFGQEVAELPLVATSKINHGKGYFQLLFACIEKLLSFLRVKSIVLPAA---EEAESIWTDKFGFKK 885 (936)
Q Consensus 809 L~~~~~vVsaA~lri~g~~~AEIp~vAT~~~~RgqG~gr~L~~~IE~~L~~lgV~~LvlpA~---~ea~~~w~~kfGF~~ 885 (936)
|--+|.+||=... +..+||+.-.|.|+|||||+.+.++..+.+.|..+|+.- .+... ...+.+-.+ +||..
T Consensus 4 lgpeG~PVSW~lm----dqtge~rmgyTlPeyR~~G~~~~v~~~~~~~L~~~g~P~-Y~hv~~~N~~~~r~~~~-lg~~~ 77 (89)
T PF08444_consen 4 LGPEGNPVSWSLM----DQTGEMRMGYTLPEYRGQGLMSQVMYHLAQYLHKLGFPF-YGHVDEDNEASQRLSKS-LGFIF 77 (89)
T ss_pred cCCCCCEeEEEEe----cccccccccccCHhHhcCCHHHHHHHHHHHHHHHCCCCe-EeehHhccHHHHHHHHH-CCCee
Confidence 3445778876554 678999999999999999999999999999999999873 33333 334444444 89987
Q ss_pred cC
Q 002320 886 ID 887 (936)
Q Consensus 886 i~ 887 (936)
++
T Consensus 78 ~p 79 (89)
T PF08444_consen 78 MP 79 (89)
T ss_pred cC
Confidence 75
No 93
>KOG1245 consensus Chromatin remodeling complex WSTF-ISWI, large subunit (contains heterochromatin localization, PHD and BROMO domains) [Chromatin structure and dynamics]
Probab=95.62 E-value=0.0033 Score=81.97 Aligned_cols=62 Identities=31% Similarity=0.698 Sum_probs=49.7
Q ss_pred ccCCccccccCCCCCCCCCCCCceeeCCCcCcccCCCccccCcCCcccCCCCCcceecCCchhhHHHHHhhhh
Q 002320 644 AELSGCLLCRGCDFSKSGFGPRTILLCDQCEREFHVGCLKKHKMADLRELPKGKWFCCMDCSRINSVLQNLLV 716 (936)
Q Consensus 644 ~e~~~C~iC~~~d~s~sg~~~g~LI~CDqC~rayHv~CL~p~~l~~L~evPeg~WfC~~~C~~I~~kLqkLl~ 716 (936)
.....|.+|... .....++.||.|..+||..|+++ .+..+|.++||| +.|..-+.......+
T Consensus 1106 ~~~~~c~~cr~k------~~~~~m~lc~~c~~~~h~~C~rp----~~~~~~~~dW~C-~~c~~e~~~rr~~~~ 1167 (1404)
T KOG1245|consen 1106 AVNALCKVCRRK------KQDEKMLLCDECLSGFHLFCLRP----ALSSVPPGDWMC-PSCRKEHRARRQKRF 1167 (1404)
T ss_pred cchhhhhhhhhc------ccchhhhhhHhhhhhHHHHhhhh----hhccCCcCCccC-Cccchhhhhhhhhhh
Confidence 344669999974 25678999999999999999998 688999999999 899877664444433
No 94
>COG1444 Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only]
Probab=95.47 E-value=0.017 Score=71.15 Aligned_cols=58 Identities=16% Similarity=0.106 Sum_probs=48.5
Q ss_pred eEeeeeeeccCCcCCChhHHHHHHHHHHhhhcCceEEEec--chhhHHHHhHhccCcEEcCH
Q 002320 829 AELPLVATSKINHGKGYFQLLFACIEKLLSFLRVKSIVLP--AAEEAESIWTDKFGFKKIDP 888 (936)
Q Consensus 829 AEIp~vAT~~~~RgqG~gr~L~~~IE~~L~~lgV~~Lvlp--A~~ea~~~w~~kfGF~~i~~ 888 (936)
+.|-+|||+|++|++|+|++|++.|.+++. .|+..+-.. +.++...||.+ -||.++--
T Consensus 532 ~RIvRIAvhPe~q~~GiGsrlL~~l~~~a~-~~~DwlgvsFG~t~~L~rFW~r-nGF~pVhl 591 (758)
T COG1444 532 WRIVRIAVHPELQRMGIGSRLLALLIEEAR-KGLDWLGVSFGYTEELLRFWLR-NGFVPVHL 591 (758)
T ss_pred eeEEEEEeCHHHHhcCHHHHHHHHHHHHHh-cCCCEEeeccCCCHHHHHHHHH-cCeEEEEe
Confidence 678899999999999999999999999986 444544433 67889999999 99998743
No 95
>COG0454 WecD Histone acetyltransferase HPA2 and related acetyltransferases [Transcription / General function prediction only]
Probab=95.39 E-value=0.021 Score=47.99 Aligned_cols=44 Identities=16% Similarity=0.120 Sum_probs=39.4
Q ss_pred eeeccCCcCCChhHHHHHHHHHHhhhcCceEEEecchhhHHHHhHhccCc
Q 002320 834 VATSKINHGKGYFQLLFACIEKLLSFLRVKSIVLPAAEEAESIWTDKFGF 883 (936)
Q Consensus 834 vAT~~~~RgqG~gr~L~~~IE~~L~~lgV~~LvlpA~~ea~~~w~~kfGF 883 (936)
++++++|||+|+|+.|++.+++.+...|+. ....+..+|.. +||
T Consensus 87 l~v~~~~rg~Gig~~Ll~~~~~~~~~~g~~-----~~~~~~~~~~~-~~~ 130 (156)
T COG0454 87 LYVLPEYRGKGIGSALLEAALEWARKRGIS-----LNRLALEVYEK-NGF 130 (156)
T ss_pred EEecchhhccchHHHHHHHHHHHHHHcCce-----ehHHHHHHHHh-cCC
Confidence 999999999999999999999999998887 55667788888 888
No 96
>PF14542 Acetyltransf_CG: GCN5-related N-acetyl-transferase; PDB: 2H5M_A 2Q44_A 1XMT_A 2Q4Y_A 2IL4_A 2EVN_A 1R57_A.
Probab=95.10 E-value=0.11 Score=47.02 Aligned_cols=57 Identities=12% Similarity=0.040 Sum_probs=48.5
Q ss_pred EEEeCCeEEEEEEEEEeccceeEeeeeeeccCCcCCChhHHHHHHHHHHhhhcCceEE
Q 002320 808 ILTVNSSVVSAGILRVFGQEVAELPLVATSKINHGKGYFQLLFACIEKLLSFLRVKSI 865 (936)
Q Consensus 808 VL~~~~~vVsaA~lri~g~~~AEIp~vAT~~~~RgqG~gr~L~~~IE~~L~~lgV~~L 865 (936)
.+..+|+.++...++. ..++-.|--.-|.+++||||+++.|++++-+.++..|.+=.
T Consensus 3 ~~~~~g~~~a~l~Y~~-~~~~~~i~hT~V~~~~rGqGia~~L~~~~l~~a~~~~~kv~ 59 (78)
T PF14542_consen 3 ELKDDGEEIAELTYRE-DGGVIVITHTEVPPELRGQGIAKKLVEAALDYARENGLKVV 59 (78)
T ss_dssp EEESSTTEEEEEEEEE-SSSEEEEEEEEE-CSSSTTTHHHHHHHHHHHHHHHTT-EEE
T ss_pred EEEECCEEEEEEEEEe-CCCEEEEEEEEECccccCCcHHHHHHHHHHHHHHHCCCEEE
Confidence 3567788999999977 67889999999999999999999999999999999987643
No 97
>PF12568 DUF3749: Acetyltransferase (GNAT) domain; InterPro: IPR024612 This domain is found in uncharacterised proteins from Gammaproteobacteria, and is approximately 40 amino acids in length. It contains two completely conserved residues (D and I) that may be functionally important. Proteins having this domain are frequently annotated as acetyltransferases of the GNAT family; however there is little accompanying annotation to confirm this.; PDB: 2K5T_A.
Probab=95.02 E-value=0.17 Score=50.16 Aligned_cols=80 Identities=18% Similarity=0.258 Sum_probs=55.8
Q ss_pred cEEEEEEeCCeEEEEEEEEEeccceeEeeeeeeccCCcCCChhHHHHHHHHHHhhhcCceEEEecch------hhHHHHh
Q 002320 804 MYCAILTVNSSVVSAGILRVFGQEVAELPLVATSKINHGKGYFQLLFACIEKLLSFLRVKSIVLPAA------EEAESIW 877 (936)
Q Consensus 804 fY~~VL~~~~~vVsaA~lri~g~~~AEIp~vAT~~~~RgqG~gr~L~~~IE~~L~~lgV~~LvlpA~------~ea~~~w 877 (936)
+|++ .-|+.++||+.+.+.| +-++|--+.|++.=||.|.|..|++.+.+.+.. |....+.+. ..+...+
T Consensus 40 l~aA--rFNdRlLgAv~v~~~~-~~~~L~~l~VRevTRrRGVG~yLlee~~rq~p~--i~~w~l~~~~~~~~~~~~~~~F 114 (128)
T PF12568_consen 40 LFAA--RFNDRLLGAVKVTISG-QQAELSDLCVREVTRRRGVGLYLLEEVLRQLPD--IKHWWLADEGVEPQDRAVMAAF 114 (128)
T ss_dssp EEEE--EETTEEEEEEEEEEET-TEEEEEEEEE-TT-SSSSHHHHHHHHHHHHS-S----EEEE--TT-S--THHHHHHH
T ss_pred EEEE--EechheeeeEEEEEcC-cceEEeeEEEeeccccccHHHHHHHHHHHHCCC--CcEEEEecCCCcccchHHHHHH
Confidence 5544 7899999999999976 479999999999999999999999999999954 455555433 2333344
Q ss_pred HhccCcEEcCH
Q 002320 878 TDKFGFKKIDP 888 (936)
Q Consensus 878 ~~kfGF~~i~~ 888 (936)
...+||...++
T Consensus 115 m~a~GF~~~~~ 125 (128)
T PF12568_consen 115 MQACGFSAQSD 125 (128)
T ss_dssp HHHHT-EE-SS
T ss_pred HHHcCccccCC
Confidence 44499987653
No 98
>COG3053 CitC Citrate lyase synthetase [Energy production and conversion]
Probab=94.82 E-value=0.1 Score=57.88 Aligned_cols=79 Identities=20% Similarity=0.298 Sum_probs=69.2
Q ss_pred cEEEEEEeCCeEEEEEEEEEeccceeEeeeeeeccCCcCCChhHHHHHHHHHHhhhcCceEEEecchhhHHHHhHhccCc
Q 002320 804 MYCAILTVNSSVVSAGILRVFGQEVAELPLVATSKINHGKGYFQLLFACIEKLLSFLRVKSIVLPAAEEAESIWTDKFGF 883 (936)
Q Consensus 804 fY~~VL~~~~~vVsaA~lri~g~~~AEIp~vAT~~~~RgqG~gr~L~~~IE~~L~~lgV~~LvlpA~~ea~~~w~~kfGF 883 (936)
.++++...|+++|++|++ .|. -|.-|||++.+||-|+.-.|+..|-..+-++|...||+-+-++-..++.. +||
T Consensus 37 ~~v~~~~~~~~iiacGsi--aGn---vikcvAvs~s~qGeGl~lkl~TeLin~ay~~g~~hLFiyTKp~~~~lFk~-~GF 110 (352)
T COG3053 37 YFVAIYRDNEEIIACGSI--AGN---VIKCVAVSESLQGEGLALKLVTELINLAYERGRTHLFIYTKPEYAALFKQ-CGF 110 (352)
T ss_pred EEEEEEcCCCcEEEeccc--ccc---eeEEEEechhcccccHHHHHHHHHHHHHHHcCCceEEEEechhHHHHHHh-CCc
Confidence 344444456999999995 453 48899999999999999999999999999999999999999999999999 999
Q ss_pred EEcCH
Q 002320 884 KKIDP 888 (936)
Q Consensus 884 ~~i~~ 888 (936)
..+..
T Consensus 111 ~~i~~ 115 (352)
T COG3053 111 SEIAS 115 (352)
T ss_pred eEeec
Confidence 99876
No 99
>KOG4144 consensus Arylalkylamine N-acetyltransferase [General function prediction only]
Probab=94.80 E-value=0.02 Score=58.03 Aligned_cols=60 Identities=20% Similarity=0.260 Sum_probs=51.1
Q ss_pred eeEeeeeeeccCCcCCChhHHHHHH-HHHHhhhcCceEEEecchhhHHHHhHhccCcEEcCH
Q 002320 828 VAELPLVATSKINHGKGYFQLLFAC-IEKLLSFLRVKSIVLPAAEEAESIWTDKFGFKKIDP 888 (936)
Q Consensus 828 ~AEIp~vAT~~~~RgqG~gr~L~~~-IE~~L~~lgV~~LvlpA~~ea~~~w~~kfGF~~i~~ 888 (936)
-+.|-.+|+.|+||.||++..|+.. |..+-..-=+++.+|=+-+..++||++ |||+.+++
T Consensus 101 ni~iHsl~Ihpa~rk~g~a~~Ll~~ylq~l~~q~i~~r~~Li~h~pLvPFYEr-~gFk~vgp 161 (190)
T KOG4144|consen 101 NIHIHSLAIHPAFRKQGRAPILLWRYLQHLGSQPIVRRAALICHDPLVPFYER-FGFKAVGP 161 (190)
T ss_pred ceeEEEEEecHHHHhcCcchhHHHHHHHHhhcCccccceeeeecCCccchhHh-cCceeecc
Confidence 3778889999999999999999877 544444555678899999999999999 99999998
No 100
>COG1670 RimL Acetyltransferases, including N-acetylases of ribosomal proteins [Translation, ribosomal structure and biogenesis]
Probab=94.54 E-value=0.18 Score=49.40 Aligned_cols=90 Identities=17% Similarity=0.172 Sum_probs=66.8
Q ss_pred ccCCcEEEEEEeCC--eEEEEEEEEEec----cceeEeeeeeeccCCcCCChhHHHHHHHHHHhhh-cCceEEEecchhh
Q 002320 800 EFGGMYCAILTVNS--SVVSAGILRVFG----QEVAELPLVATSKINHGKGYFQLLFACIEKLLSF-LRVKSIVLPAAEE 872 (936)
Q Consensus 800 df~GfY~~VL~~~~--~vVsaA~lri~g----~~~AEIp~vAT~~~~RgqG~gr~L~~~IE~~L~~-lgV~~LvlpA~~e 872 (936)
.-.+.|.+.+..++ ++||...+..+. .+.+|+...- .+.|+|+|++...+.++.+.+-. +|++++++-....
T Consensus 62 ~~~~~~~~~~~~~~~~~~iG~~~~~~~~~~~~~~~~~ig~~l-~~~~~g~G~~tea~~~~l~~~f~~~~l~ri~~~~~~~ 140 (187)
T COG1670 62 LGGGAFAIELKATGDGELIGVIGLSDIDRAANGDLAEIGYWL-DPEYWGKGYATEALRALLDYAFEELGLHRIEATVDPE 140 (187)
T ss_pred cCCceEEEEEEeCCCCeEEEEEEEEEeccccccceEEEEEEE-ChHHhcCchHHHHHHHHHHHhhhhcCceEEEEEecCC
Confidence 33456766666554 999999988655 5677777766 89999999999998888887555 9999988765543
Q ss_pred ---HHHHhHhccCcEEcCHHHH
Q 002320 873 ---AESIWTDKFGFKKIDPELL 891 (936)
Q Consensus 873 ---a~~~w~~kfGF~~i~~~~~ 891 (936)
+...+.+ +||+..+....
T Consensus 141 N~~S~rv~ek-~Gf~~eg~~~~ 161 (187)
T COG1670 141 NEASIRVYEK-LGFRLEGELRQ 161 (187)
T ss_pred CHHHHHHHHH-cCChhhhhhhh
Confidence 3456666 99997776443
No 101
>KOG2488 consensus Acetyltransferase (GNAT) domain-containing protein [General function prediction only]
Probab=94.17 E-value=0.14 Score=53.85 Aligned_cols=84 Identities=21% Similarity=0.281 Sum_probs=60.6
Q ss_pred cEEEEEEeCCeEEEEEEEEEe---ccceeEeeeeeeccCCcCCChhHHHHHHHHHHhhhcCceEEEe---cchhhHHHHh
Q 002320 804 MYCAILTVNSSVVSAGILRVF---GQEVAELPLVATSKINHGKGYFQLLFACIEKLLSFLRVKSIVL---PAAEEAESIW 877 (936)
Q Consensus 804 fY~~VL~~~~~vVsaA~lri~---g~~~AEIp~vAT~~~~RgqG~gr~L~~~IE~~L~~lgV~~Lvl---pA~~ea~~~w 877 (936)
-|.+.....+++||-+.+|.- |..++=.-=|-+.+.|||+|+|+.|++.+|.++..-+.+.++| ..-.-|.+||
T Consensus 93 ~Yi~a~~~~~~~vgf~~Frf~vd~g~~vlYcyEvqv~~~yR~kGiGk~LL~~l~~~a~~~~~~kVmLTVf~~N~~al~Fy 172 (202)
T KOG2488|consen 93 RYICAWNNKSKLVGFTMFRFTVDTGDPVLYCYEVQVASAYRGKGIGKFLLDTLEKLADSRHMRKVMLTVFSENIRALGFY 172 (202)
T ss_pred eEEEEEcCCCceeeEEEEEEEcccCCeEEEEEEEeehhhhhccChHHHHHHHHHHHHHHHHhhhheeeeecccchhHHHH
Confidence 453333333488888888862 2234433444566789999999999999999988887776554 4566789999
Q ss_pred HhccCcEEcCH
Q 002320 878 TDKFGFKKIDP 888 (936)
Q Consensus 878 ~~kfGF~~i~~ 888 (936)
.+ +||.+...
T Consensus 173 ~~-~gf~~~~~ 182 (202)
T KOG2488|consen 173 HR-LGFVVDEE 182 (202)
T ss_pred HH-cCcccCCC
Confidence 99 99987765
No 102
>KOG0954 consensus PHD finger protein [General function prediction only]
Probab=94.16 E-value=0.021 Score=69.00 Aligned_cols=50 Identities=32% Similarity=0.824 Sum_probs=42.1
Q ss_pred cCCccccccCCCCCCCCCCCCceeeCCCcCcccCCCccccCcCCcccCCCCCcceecCCch
Q 002320 645 ELSGCLLCRGCDFSKSGFGPRTILLCDQCEREFHVGCLKKHKMADLRELPKGKWFCCMDCS 705 (936)
Q Consensus 645 e~~~C~iC~~~d~s~sg~~~g~LI~CDqC~rayHv~CL~p~~l~~L~evPeg~WfC~~~C~ 705 (936)
+...|.+|..+| ......|++||.|.-..|..|.. +.++|++.|.| ..|.
T Consensus 270 edviCDvCrspD----~e~~neMVfCd~Cn~cVHqaCyG------Ile~p~gpWlC-r~Ca 319 (893)
T KOG0954|consen 270 EDVICDVCRSPD----SEEANEMVFCDKCNICVHQACYG------ILEVPEGPWLC-RTCA 319 (893)
T ss_pred ccceeceecCCC----ccccceeEEeccchhHHHHhhhc------eeecCCCCeee-hhcc
Confidence 345699999876 23578999999999999999994 67899999999 8886
No 103
>COG2388 Predicted acetyltransferase [General function prediction only]
Probab=93.95 E-value=0.13 Score=48.97 Aligned_cols=60 Identities=18% Similarity=0.154 Sum_probs=53.9
Q ss_pred CCcEEEEEEeCCeEEEEEEEEEeccceeEeeeeeeccCCcCCChhHHHHHHHHHHhhhcCce
Q 002320 802 GGMYCAILTVNSSVVSAGILRVFGQEVAELPLVATSKINHGKGYFQLLFACIEKLLSFLRVK 863 (936)
Q Consensus 802 ~GfY~~VL~~~~~vVsaA~lri~g~~~AEIp~vAT~~~~RgqG~gr~L~~~IE~~L~~lgV~ 863 (936)
.++| ++..+|+.++.++..-.|.+.--|.-.-|.+++||||+++.|+......++..|.+
T Consensus 15 ~~~y--~~~~~G~~~~e~~y~~~~~~~i~i~HT~V~d~lrGqGia~~L~~~al~~ar~~g~k 74 (99)
T COG2388 15 NGRY--VLTDEGEVIGEATYYDRGENLIIIDHTYVPDELRGQGIAQKLVEKALEEAREAGLK 74 (99)
T ss_pred ceEE--EEecCCcEEEEEEEecCCCCEEEEecCcCCHHHcCCcHHHHHHHHHHHHHHHcCCe
Confidence 4566 45888989999998888889999999999999999999999999999999999875
No 104
>COG5141 PHD zinc finger-containing protein [General function prediction only]
Probab=93.89 E-value=0.023 Score=65.83 Aligned_cols=48 Identities=31% Similarity=0.796 Sum_probs=38.2
Q ss_pred CccccccCCCCCCCCCCCCceeeCCCcCcccCCCccccCcCCcccCCCCCcceecCCch
Q 002320 647 SGCLLCRGCDFSKSGFGPRTILLCDQCEREFHVGCLKKHKMADLRELPKGKWFCCMDCS 705 (936)
Q Consensus 647 ~~C~iC~~~d~s~sg~~~g~LI~CDqC~rayHv~CL~p~~l~~L~evPeg~WfC~~~C~ 705 (936)
+.|.+|...+ ..+.++++.||.|+-+.|..|.. ..-+|+|.|+| ..|-
T Consensus 194 ~~C~~c~~t~----~eN~naiVfCdgC~i~VHq~CYG------I~f~peG~WlC-rkCi 241 (669)
T COG5141 194 DICTKCTSTH----NENSNAIVFCDGCEICVHQSCYG------IQFLPEGFWLC-RKCI 241 (669)
T ss_pred hhhHhccccc----cCCcceEEEecCcchhhhhhccc------ceecCcchhhh-hhhc
Confidence 4588888654 23457899999999999999995 45679999999 7773
No 105
>KOG1245 consensus Chromatin remodeling complex WSTF-ISWI, large subunit (contains heterochromatin localization, PHD and BROMO domains) [Chromatin structure and dynamics]
Probab=93.73 E-value=0.016 Score=75.93 Aligned_cols=51 Identities=35% Similarity=0.917 Sum_probs=43.6
Q ss_pred CCccccccccccCCcCcccccCCCCcEEeccCCCCccccccCC--CCCcCCCCccccccccc
Q 002320 544 GLGIICHCCNSEVSPSQFEAHADGGNLLPCDGCPRAFHKECAS--LSSIPQGDWYCKYCQNM 603 (936)
Q Consensus 544 ~~~i~C~~C~~evSpS~FE~hadgG~Ll~CD~Cp~afH~~CL~--L~~vP~g~W~Cp~C~~~ 603 (936)
.....|.+|.... +...++.|+.|...||..|+. +..+|.++|+||.|+..
T Consensus 1106 ~~~~~c~~cr~k~---------~~~~m~lc~~c~~~~h~~C~rp~~~~~~~~dW~C~~c~~e 1158 (1404)
T KOG1245|consen 1106 AVNALCKVCRRKK---------QDEKMLLCDECLSGFHLFCLRPALSSVPPGDWMCPSCRKE 1158 (1404)
T ss_pred cchhhhhhhhhcc---------cchhhhhhHhhhhhHHHHhhhhhhccCCcCCccCCccchh
Confidence 4668899999632 345899999999999999996 78999999999999865
No 106
>KOG4323 consensus Polycomb-like PHD Zn-finger protein [General function prediction only]
Probab=93.58 E-value=0.036 Score=64.77 Aligned_cols=50 Identities=28% Similarity=0.816 Sum_probs=38.9
Q ss_pred cccccccccCCcCcccccCCCCcEEeccCCCCccccccCC------CCCcCCCCccccccccc
Q 002320 547 IICHCCNSEVSPSQFEAHADGGNLLPCDGCPRAFHKECAS------LSSIPQGDWYCKYCQNM 603 (936)
Q Consensus 547 i~C~~C~~evSpS~FE~hadgG~Ll~CD~Cp~afH~~CL~------L~~vP~g~W~Cp~C~~~ 603 (936)
..|.+|....++ .+.+||.|++|..-||+.|.. +-.-+...|+|..|...
T Consensus 169 ~qc~vC~~g~~~-------~~NrmlqC~~C~~~fHq~Chqp~i~~~l~~D~~~~w~C~~C~~~ 224 (464)
T KOG4323|consen 169 LQCSVCYCGGPG-------AGNRMLQCDKCRQWYHQACHQPLIKDELAGDPFYEWFCDVCNRG 224 (464)
T ss_pred ceeeeeecCCcC-------ccceeeeecccccHHHHHhccCCCCHhhccCccceEeehhhccc
Confidence 348888865554 456999999999999999995 22336678999999864
No 107
>KOG3138 consensus Predicted N-acetyltransferase [General function prediction only]
Probab=92.94 E-value=0.091 Score=55.15 Aligned_cols=61 Identities=18% Similarity=0.188 Sum_probs=51.1
Q ss_pred eeEeeeeeeccCCcCCChhHHHHHHHHHHhhhcC-ceEEEecc---hhhHHHHhHhccCcEEcCHH
Q 002320 828 VAELPLVATSKINHGKGYFQLLFACIEKLLSFLR-VKSIVLPA---AEEAESIWTDKFGFKKIDPE 889 (936)
Q Consensus 828 ~AEIp~vAT~~~~RgqG~gr~L~~~IE~~L~~lg-V~~LvlpA---~~ea~~~w~~kfGF~~i~~~ 889 (936)
+.-|-.++|.+.||..|+|..|++.+.+.....+ ++++.+.+ ...|..||++ +||+.+...
T Consensus 89 ~~yi~~Lgvl~~yR~~gIGs~Ll~~~~~~~~~~~~~~~v~lHv~~~n~~ai~~Y~~-~gF~~~~~~ 153 (187)
T KOG3138|consen 89 VIYILSLGVLPRYRNKGIGSKLLEFVKKYCSEAHQCRRVYLHVQAVNESAIEFYEK-RGFEIVERL 153 (187)
T ss_pred eeEEEeecccHHHHhcchHHHHHHHHHHHHhcccccceEEEEEEeCCCcHHHHHHh-cCceEeecc
Confidence 5668899999999999999999999999988888 66666554 4567788888 999988763
No 108
>COG4552 Eis Predicted acetyltransferase involved in intracellular survival and related acetyltransferases [General function prediction only]
Probab=92.63 E-value=0.15 Score=57.89 Aligned_cols=84 Identities=18% Similarity=0.218 Sum_probs=64.9
Q ss_pred CcccCCcEEEEEEeCCeEEEEEEEEEe------cc---ceeEeeeeeeccCCcCCChhHHHHHHHHHHhhhcCceEEEec
Q 002320 798 GQEFGGMYCAILTVNSSVVSAGILRVF------GQ---EVAELPLVATSKINHGKGYFQLLFACIEKLLSFLRVKSIVLP 868 (936)
Q Consensus 798 r~df~GfY~~VL~~~~~vVsaA~lri~------g~---~~AEIp~vAT~~~~RgqG~gr~L~~~IE~~L~~lgV~~Lvlp 868 (936)
.+++.++| |++.|.++++ .|++. |. ..|-|-.||+.|+|||+|+-|.|+....+..++-|+.-.+|.
T Consensus 35 il~~~n~~--vi~~nqkl~s--~L~i~~f~~~f~~q~l~t~GIa~Vas~P~~R~~G~~~~Ll~~sLre~~~kG~p~s~L~ 110 (389)
T COG4552 35 ILAEPNSY--VIYMNQKLAS--RLHIPPFIFWFGNQVLPTAGIAGVASAPTYRRRGALRALLAHSLREIARKGYPVSALH 110 (389)
T ss_pred hccCCcce--EEeehhhhhh--cccccchheeeCCeeeeccceEEEEechhhccCcHHHHHHHHHHHHHHHcCCeeEEec
Confidence 34566677 4577766654 44443 32 356788999999999999999999999999999999988876
Q ss_pred chhhHHHHhHhccCcEEcCH
Q 002320 869 AAEEAESIWTDKFGFKKIDP 888 (936)
Q Consensus 869 A~~ea~~~w~~kfGF~~i~~ 888 (936)
+. ..+||.+ |||..-+.
T Consensus 111 P~--s~~iYrK-fGye~asn 127 (389)
T COG4552 111 PF--SGGIYRK-FGYEYASN 127 (389)
T ss_pred cC--chhhHhh-ccccccce
Confidence 65 3679999 99987665
No 109
>PF06852 DUF1248: Protein of unknown function (DUF1248); InterPro: IPR009658 This entry represents a conserved region within a number of proteins of unknown function that seem to be specific to Caenorhabditis elegans. Note that some proteins in the entry contain more than one copy of this region.
Probab=92.15 E-value=0.72 Score=48.34 Aligned_cols=82 Identities=18% Similarity=0.204 Sum_probs=59.0
Q ss_pred EEEEEEeCCeEEEEEEEEEec-------cceeEeeeeeeccCCcCCChhHHHHHHHH-HHhhhcCceEEEecchhhHHHH
Q 002320 805 YCAILTVNSSVVSAGILRVFG-------QEVAELPLVATSKINHGKGYFQLLFACIE-KLLSFLRVKSIVLPAAEEAESI 876 (936)
Q Consensus 805 Y~~VL~~~~~vVsaA~lri~g-------~~~AEIp~vAT~~~~RgqG~gr~L~~~IE-~~L~~lgV~~LvlpA~~ea~~~ 876 (936)
|.++++--..+|++..+-.+. ..+--+.+.=+.|+|||+|+++ |+..+. +.+.. +-...++-+...+..+
T Consensus 48 ~~~~~KgT~~via~~~~~~~~~l~~~~d~pl~~~G~~w~~p~yRg~~~~k-l~~~~~~~~~~~-~~~N~~~~~~~~~~~~ 125 (181)
T PF06852_consen 48 VLTCLKGTDRVIATVHLIRFDPLNPSPDKPLQFIGFFWIDPEYRGKGIMK-LQDDICMDELDS-VDDNSVAQGNVKMSNF 125 (181)
T ss_pred EEEEEcCCCcEEEEEEEEEeccCCCCCCCCeEEEeeeeeCCcccCcchHH-HHHHHHHHHhcc-CCCceeeecCHHHHHH
Confidence 444455556788877764433 2377778888999999999997 555554 44444 3456677788899999
Q ss_pred hHhccCcEEcCH
Q 002320 877 WTDKFGFKKIDP 888 (936)
Q Consensus 877 w~~kfGF~~i~~ 888 (936)
|.+-|||..++.
T Consensus 126 w~k~~G~~~~~h 137 (181)
T PF06852_consen 126 WHKMFGFDDYGH 137 (181)
T ss_pred HHHHhCCCCCcc
Confidence 999999988887
No 110
>smart00258 SAND SAND domain.
Probab=92.09 E-value=0.13 Score=46.33 Aligned_cols=50 Identities=24% Similarity=0.362 Sum_probs=40.7
Q ss_pred eCCeEEeeCcCCCCceeeCcchhhhcccc-ccCCcccceeccCCccHHHHHHH
Q 002320 260 RDGGILCSCSLCNGCRVIPPSKFEIHACK-QYRRASQYICFENGKSLLEVLRA 311 (936)
Q Consensus 260 ~~~GilC~C~~C~~~~v~s~s~FE~HAG~-~~~~p~~~I~lenG~sL~~v~~~ 311 (936)
..+|+.+-|..+++ +-+||++||.|||. ++++=-..|.. ||.+|+.+++.
T Consensus 19 f~~G~~~kCI~~~~-~~~TP~eFe~~~g~~~~K~WK~sIR~-~g~~Lr~L~~~ 69 (73)
T smart00258 19 FKCGISVKCIQYED-KWFTPKEFEIEGGKGKSKDWKRSIRC-GGSSLRTLMEN 69 (73)
T ss_pred hhcCcccCCccCCC-EEEChHHHHhhcCCcccCCcchheeE-CCccHHHHHHc
Confidence 45599999999986 89999999999995 46665666654 69999998874
No 111
>COG1243 ELP3 Histone acetyltransferase [Transcription / Chromatin structure and dynamics]
Probab=92.01 E-value=0.13 Score=60.11 Aligned_cols=51 Identities=16% Similarity=0.228 Sum_probs=45.9
Q ss_pred ccCCcCCChhHHHHHHHHHHhhhcCceEEEecchhhHHHHhHhccCcEEcCH
Q 002320 837 SKINHGKGYFQLLFACIEKLLSFLRVKSIVLPAAEEAESIWTDKFGFKKIDP 888 (936)
Q Consensus 837 ~~~~RgqG~gr~L~~~IE~~L~~lgV~~LvlpA~~ea~~~w~~kfGF~~i~~ 888 (936)
...||.+|||+.||+..|+.+++.|..++.+=+...+...|.+ |||...++
T Consensus 459 ~~~~QH~G~G~~L~~~AE~ia~ee~~~ki~viSgiG~ReYy~k-~GY~~~gp 509 (515)
T COG1243 459 EDEWQHRGYGRELLEEAERIAREEGAKKILVISGIGVREYYRK-LGYELDGP 509 (515)
T ss_pred cchhhcccHHHHHHHHHHHHHHhhccccEEEEecccHHHHHHH-hCccccCC
Confidence 4689999999999999999999999999988888888888887 99987664
No 112
>PF13831 PHD_2: PHD-finger; PDB: 2L43_A 2KU3_A.
Probab=91.93 E-value=0.024 Score=44.22 Aligned_cols=33 Identities=36% Similarity=1.075 Sum_probs=17.9
Q ss_pred CceeeCCCcCcccCCCccccCcCCcccCCCCC-cceecCCc
Q 002320 665 RTILLCDQCEREFHVGCLKKHKMADLRELPKG-KWFCCMDC 704 (936)
Q Consensus 665 g~LI~CDqC~rayHv~CL~p~~l~~L~evPeg-~WfC~~~C 704 (936)
+.||.|+.|.-..|..|..- ..+|.+ .|+| .-|
T Consensus 2 n~ll~C~~C~v~VH~~CYGv------~~~~~~~~W~C-~~C 35 (36)
T PF13831_consen 2 NPLLFCDNCNVAVHQSCYGV------SEVPDGDDWLC-DRC 35 (36)
T ss_dssp CEEEE-SSS--EEEHHHHT-------SS--SS------HHH
T ss_pred CceEEeCCCCCcCChhhCCc------ccCCCCCcEEC-CcC
Confidence 46999999999999999953 444555 7999 555
No 113
>PF13480 Acetyltransf_6: Acetyltransferase (GNAT) domain
Probab=91.11 E-value=1.2 Score=42.04 Aligned_cols=66 Identities=8% Similarity=-0.162 Sum_probs=56.5
Q ss_pred cEEEEEEeCCeEEEEEEEEEeccceeEeeeeeeccCCcCCChhHHHHHHHHHHhhhcCceEEEecch
Q 002320 804 MYCAILTVNSSVVSAGILRVFGQEVAELPLVATSKINHGKGYFQLLFACIEKLLSFLRVKSIVLPAA 870 (936)
Q Consensus 804 fY~~VL~~~~~vVsaA~lri~g~~~AEIp~vAT~~~~RgqG~gr~L~~~IE~~L~~lgV~~LvlpA~ 870 (936)
...++++.+|++|+++.....+ +.+..-..+++++|+..+.|..|+..+-+.+...|++.+=+-..
T Consensus 71 ~~l~~~~~~g~~va~~~~~~~~-~~~~~~~~g~~~~~~~~~~~~~l~~~~i~~a~~~g~~~~d~g~g 136 (142)
T PF13480_consen 71 LRLFVLYDGGEPVAFALGFRHG-GTLYYWYGGYDPEYRKYSPGRLLLWEAIRWAIERGLRYFDFGGG 136 (142)
T ss_pred EEEEEEEECCEEEEEEEEEEEC-CEEEEEEEEECHhhHhCCHHHHHHHHHHHHHHHCCCCEEEECCC
Confidence 4556778899999999775554 68889999999999999999999999999999999988766543
No 114
>KOG3234 consensus Acetyltransferase, (GNAT) family [General function prediction only]
Probab=90.91 E-value=0.31 Score=49.92 Aligned_cols=59 Identities=10% Similarity=0.091 Sum_probs=47.4
Q ss_pred ceeEeeeeeeccCCcCCChhHHHHHHHHHHhhhcCce---EEEecchhhHHHHhHhccCcEEc
Q 002320 827 EVAELPLVATSKINHGKGYFQLLFACIEKLLSFLRVK---SIVLPAAEEAESIWTDKFGFKKI 886 (936)
Q Consensus 827 ~~AEIp~vAT~~~~RgqG~gr~L~~~IE~~L~~lgV~---~LvlpA~~ea~~~w~~kfGF~~i 886 (936)
.-+++--+++.|+||++|++..||+.||+.....+.- -+|.-.-.-|..+|++ |||.+.
T Consensus 68 wh~HvTAltVap~~Rrl~la~~lm~~led~~d~~~a~fvDLfVr~sN~iAI~mYkk-LGY~~Y 129 (173)
T KOG3234|consen 68 WHGHVTALTVAPDYRRLGLAAKLMDTLEDVSDVDNAYFVDLFVRVSNQIAIDMYKK-LGYSVY 129 (173)
T ss_pred eeeEEEEEEechhHHHHHHHHHHHHHHHHHHHhhhhheeeeeeeccchhHHHHHHh-cCceEE
Confidence 3477888999999999999999999999988766433 3344455678999999 999863
No 115
>TIGR03694 exosort_acyl putative PEP-CTERM/exosortase system-associated acyltransferase. Members of this protein family are restricted to bacterial species with the PEP-CTERM/exosortase system predicted to act in exopolysaccharide-associated protein targeting. PSI-BLAST and CDD reveal relationships to the acyltransferase family that includes N-acyl-L-homoserine lactone synthetase. Several members of this family may be found in a single genome. These proteins likely contribute to chemical modifications in exopolysaccharide and biofilm structural material production.
Probab=90.54 E-value=2.3 Score=46.27 Aligned_cols=121 Identities=16% Similarity=0.093 Sum_probs=80.2
Q ss_pred hHHHHHHHHHHHhhcCCCcccCCcCCCcchhhhcc-CCCCcccCCcEEEEEE-eCCeEEEEEEEEEe-------------
Q 002320 760 TRLLLSQAVAIFHDCFDPIVDSISGRDLIPSMVYG-NLRGQEFGGMYCAILT-VNSSVVSAGILRVF------------- 824 (936)
Q Consensus 760 ~~~~La~Al~If~EcFdPiid~rSgrDLIp~MVy~-~~~r~df~GfY~~VL~-~~~~vVsaA~lri~------------- 824 (936)
+...+..|..+=++.|- +. -|-++..+---+ ++...|-...|.++.. .++++||++++...
T Consensus 15 ~~~~~~~~~~lR~~VFv---~e-~gw~~~~~~~~~~E~D~~D~~~~h~l~~~~~~g~vvG~~RLl~t~~~~p~~~~p~e~ 90 (241)
T TIGR03694 15 TPELLEEAFRLRYQVYC---EE-LGFEPPSDYPDGLETDEYDAHSVHSLLRHRRTGTFVGCVRLVLPNSSDPDQPFPFEK 90 (241)
T ss_pred CHHHHHHHHHHHHHHHH---Hh-cCCCCCCCCCCCCcCCCCCCCCcEEEEEECCCCCEEEEEEEeccccccccccccHHH
Confidence 34457778877777772 11 112211100011 3334444445544443 35899999998642
Q ss_pred -----------------ccceeEeeeeeeccCCcCC--------C--------------------hhHHHHHHHHHHhhh
Q 002320 825 -----------------GQEVAELPLVATSKINHGK--------G--------------------YFQLLFACIEKLLSF 859 (936)
Q Consensus 825 -----------------g~~~AEIp~vAT~~~~Rgq--------G--------------------~gr~L~~~IE~~L~~ 859 (936)
..+++|+-++|+.++||+. | +...|+.++-+.+..
T Consensus 91 ~~~~~~~~~~~~~~~~~~~~i~E~SRf~V~~~~r~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~a~~ 170 (241)
T TIGR03694 91 HCSHSLDGLFLDPRRLPRSRIAEVSRLAVSKDFRRRKGEKLKPSGVGVIETEAPFSESERRRFPHIPLGLYLGLIALSSA 170 (241)
T ss_pred HhccccchhhcCccccCCCceEEeehheECHhHhCCcccccccccccccccccccchhhcccCchHHHHHHHHHHHHHHH
Confidence 1369999999999999874 2 346799999999999
Q ss_pred cCceEEEecchhhHHHHhHhccCcEE
Q 002320 860 LRVKSIVLPAAEEAESIWTDKFGFKK 885 (936)
Q Consensus 860 lgV~~LvlpA~~ea~~~w~~kfGF~~ 885 (936)
.|+++++.-+.+.....+.+ +||..
T Consensus 171 ~Gi~~~~~v~~~~l~r~l~r-~G~~~ 195 (241)
T TIGR03694 171 NGITHWYAIMEPRLARLLSR-FGIQF 195 (241)
T ss_pred CCCcEEEEEeCHHHHHHHHH-hCCce
Confidence 99999999888888887766 88643
No 116
>PF01342 SAND: SAND domain; InterPro: IPR000770 The SAND domain (named after Sp100, AIRE-1, NucP41/75, DEAF-1) is a conserved ~80 residue region found in a number of nuclear proteins, many of which function in chromatin-dependent transcriptional control. These include proteins linked to various human diseases, such as the Sp100 (Speckled protein 100 kDa), NUDR (Nuclear DEAF-1 related), GMEB (Glucocorticoid Modulatory Element Binding) proteins and AIRE-1 (Autoimmune regulator 1) proteins. Proteins containing the SAND domain have a modular structure; the SAND domain can be associated with a number of other modules, including the bromodomain, the PHD finger and the MYND finger. Because no SAND domain has been found in yeast, it is thought that the SAND domain could be restricted to animal phyla. Many SAND domain-containing proteins, including NUDR, DEAF-1 (Deformed epidermal autoregulatory factor-1) and GMEB, have been shown to bind DNA sequences specifically. The SAND domain has been proposed to mediate the DNA binding activity of these proteins [, ]. The resolution of the 3D structure of the SAND domain from Sp100b has revealed that it consists of a novel alpha/beta fold. The SAND domain adopts a compact fold consisting of a strongly twisted, five-stranded antiparallel beta-sheet with four alpha-helices packing against one side of the beta-sheet. The opposite side of the beta-sheet is solvent exposed. The beta-sheet and alpha-helical parts of the structure form two distinct regions. Multiple hydrophobic residues pack between these regions to form a structural core. A conserved KDWK sequence motif is found within the alpha-helical, positively charged surface patch. The DNA binding surface has been mapped to the alpha-helical region encompassing the KDWK motif [].; GO: 0003677 DNA binding, 0005634 nucleus; PDB: 1OQJ_B 1UFN_A 1H5P_A.
Probab=90.53 E-value=0.1 Score=47.87 Aligned_cols=55 Identities=27% Similarity=0.470 Sum_probs=39.3
Q ss_pred eeEEEe-----CCeEEeeCcCCCCceeeCcchhhhcccccc-CCcccceeccCCccHHHHHHH
Q 002320 255 LRGIIR-----DGGILCSCSLCNGCRVIPPSKFEIHACKQY-RRASQYICFENGKSLLEVLRA 311 (936)
Q Consensus 255 l~G~i~-----~~GilC~C~~C~~~~v~s~s~FE~HAG~~~-~~p~~~I~lenG~sL~~v~~~ 311 (936)
++|++. ..|+...|-.++ .+-+||.+||.|||..+ |+=-..|.. +|.+|..+|++
T Consensus 18 ~~G~L~~~k~~~~g~~~kCI~~~-g~~~TP~eFE~~~G~~~sK~WK~SIr~-~g~~L~~li~~ 78 (82)
T PF01342_consen 18 VKGTLYKKKFVKQGICGKCIQCE-GRWFTPSEFERHGGKGSSKDWKRSIRC-GGEPLGKLIEK 78 (82)
T ss_dssp EEEEEEHHHH-TTGTTSS-EEET-TEEE-HHHHHHHHTTCTCS-HHHHSEE-TTEEHHHHHHT
T ss_pred eEEEEEHHHhhcccccCceEeeC-CcEECHHHHHhhcCcccCCCCCccEEE-CCEEHHHHHhh
Confidence 355554 445666677777 57999999999999874 445667877 89999998864
No 117
>KOG3235 consensus Subunit of the major N alpha-acetyltransferase [General function prediction only]
Probab=89.22 E-value=1.2 Score=45.96 Aligned_cols=82 Identities=13% Similarity=0.193 Sum_probs=62.2
Q ss_pred EEEE-eCCeEEEEEEEEEec-----cceeEeeeeeeccCCcCCChhHHHHHHHHH-HhhhcCceEEEecch---hhHHHH
Q 002320 807 AILT-VNSSVVSAGILRVFG-----QEVAELPLVATSKINHGKGYFQLLFACIEK-LLSFLRVKSIVLPAA---EEAESI 876 (936)
Q Consensus 807 ~VL~-~~~~vVsaA~lri~g-----~~~AEIp~vAT~~~~RgqG~gr~L~~~IE~-~L~~lgV~~LvlpA~---~ea~~~ 876 (936)
+|.+ .+|.|||-.....+. ..-.+|-.+||...||+.|+++.||..-.+ ++...+.+.+-|... ..|...
T Consensus 44 yVA~D~~gkiVGYvlAkmee~p~~~~~hGhItSlaV~rs~RrlGla~kLm~qa~rAm~E~~~A~yvsLHVR~SNraAl~L 123 (193)
T KOG3235|consen 44 YVAEDENGKIVGYVLAKMEEDPDDEPPHGHITSLAVKRSYRRLGLAQKLMNQASRAMVEVYEAKYVSLHVRKSNRAALHL 123 (193)
T ss_pred EEEEcCCCcEEEEeeeehhhcccCCCCCCeeEEeeehhhHHHhhHHHHHHHHHHHHHHHhhcceEEEEeeecccHHHHHh
Confidence 3445 568999987776654 225689999999999999999999987554 444556666666643 468999
Q ss_pred hHhccCcEEcCH
Q 002320 877 WTDKFGFKKIDP 888 (936)
Q Consensus 877 w~~kfGF~~i~~ 888 (936)
|++.+||.+.+-
T Consensus 124 Y~~tl~F~v~ev 135 (193)
T KOG3235|consen 124 YKNTLGFVVCEV 135 (193)
T ss_pred hhhccceEEeec
Confidence 999999998765
No 118
>KOG2036 consensus Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only]
Probab=89.07 E-value=0.35 Score=58.94 Aligned_cols=52 Identities=19% Similarity=0.246 Sum_probs=42.3
Q ss_pred CcCCCcchhhhccCCCCcccCCcEEEEEEeCCeEEEEEEEEEeccceeEeeeeeeccCCcCCChhHHHHHHHHH
Q 002320 782 ISGRDLIPSMVYGNLRGQEFGGMYCAILTVNSSVVSAGILRVFGQEVAELPLVATSKINHGKGYFQLLFACIEK 855 (936)
Q Consensus 782 rSgrDLIp~MVy~~~~r~df~GfY~~VL~~~~~vVsaA~lri~g~~~AEIp~vAT~~~~RgqG~gr~L~~~IE~ 855 (936)
+.+-|+||..|-..|.+.+|.+.| | |.|-+|||+|+|++-|||.+-++-|.+
T Consensus 590 ~a~GdlIpW~vseQf~D~~F~~l~-------G---------------aRIVRIAvhP~y~~MGYGsrAvqLL~~ 641 (1011)
T KOG2036|consen 590 RAAGDLIPWTVSEQFQDEDFPKLS-------G---------------ARIVRIAVHPEYQKMGYGSRAVQLLTD 641 (1011)
T ss_pred cccCCccceehhhhhcccchhccc-------C---------------ceEEEEEeccchhccCccHHHHHHHHH
Confidence 345699998887778788887777 2 567889999999999999887777766
No 119
>PF12861 zf-Apc11: Anaphase-promoting complex subunit 11 RING-H2 finger
Probab=88.08 E-value=0.23 Score=46.02 Aligned_cols=60 Identities=18% Similarity=0.346 Sum_probs=36.4
Q ss_pred CCccccccccccCCcCc--ccccCCCCcEEeccCCCCccccccCC-CCCcCCCCcccccccccc
Q 002320 544 GLGIICHCCNSEVSPSQ--FEAHADGGNLLPCDGCPRAFHKECAS-LSSIPQGDWYCKYCQNMF 604 (936)
Q Consensus 544 ~~~i~C~~C~~evSpS~--FE~hadgG~Ll~CD~Cp~afH~~CL~-L~~vP~g~W~Cp~C~~~~ 604 (936)
.+++.|++|...+.... -..-.|.-.++.+ .|.+.||.-|+. ..+-....-.||.|++.+
T Consensus 19 ~~dd~CgICr~~fdg~Cp~Ck~Pgd~Cplv~g-~C~H~FH~hCI~kWl~~~~~~~~CPmCR~~w 81 (85)
T PF12861_consen 19 ANDDVCGICRMPFDGCCPDCKFPGDDCPLVWG-KCSHNFHMHCILKWLSTQSSKGQCPMCRQPW 81 (85)
T ss_pred CCCCceeeEecccccCCCCccCCCCCCceeec-cCccHHHHHHHHHHHccccCCCCCCCcCCee
Confidence 34889999997654211 0001122244444 499999999995 212223456999999765
No 120
>PF12678 zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This domain constitutes a conserved region found in proteins that participate in diverse functions relevant to chromosome metabolism and cell cycle control [].The domain contains 8 cysteine/ histidine residues which are proposed to be the conserved residues involved in zinc binding.; PDB: 4A0C_D 4A0L_I 4A0K_B 2ECL_A 1LDK_C 3RTR_F 3DQV_Y 1U6G_B 1LDJ_B 2HYE_D ....
Probab=87.06 E-value=0.16 Score=45.37 Aligned_cols=54 Identities=20% Similarity=0.375 Sum_probs=33.6
Q ss_pred ccccccccccCCcCcccccCCCC-cEEeccCCCCccccccCCCCCcCCCCccccccc
Q 002320 546 GIICHCCNSEVSPSQFEAHADGG-NLLPCDGCPRAFHKECASLSSIPQGDWYCKYCQ 601 (936)
Q Consensus 546 ~i~C~~C~~evSpS~FE~hadgG-~Ll~CD~Cp~afH~~CL~L~~vP~g~W~Cp~C~ 601 (936)
.+.|.+|...+.....+..+++. -.+.-..|++.||..|+. .|-.....||.|+
T Consensus 19 ~d~C~IC~~~l~~~~~~~~~~~~~~~i~~~~C~H~FH~~Ci~--~Wl~~~~~CP~CR 73 (73)
T PF12678_consen 19 DDNCAICREPLEDPCPECQAPQDECPIVWGPCGHIFHFHCIS--QWLKQNNTCPLCR 73 (73)
T ss_dssp CSBETTTTSBTTSTTCCHHHCTTTS-EEEETTSEEEEHHHHH--HHHTTSSB-TTSS
T ss_pred CCcccccChhhhChhhhhcCCccccceEecccCCCEEHHHHH--HHHhcCCcCCCCC
Confidence 44599999877443333333332 333335699999999994 4444455899985
No 121
>PF07897 DUF1675: Protein of unknown function (DUF1675); InterPro: IPR012463 The members of this family are sequences derived from hypothetical plant proteins of unknown function. One member of this family (Q9SFV5 from SWISSPROT) is annotated as a putative RNA-binding protein, but no evidence was found to support this.
Probab=85.91 E-value=1.1 Score=49.90 Aligned_cols=68 Identities=16% Similarity=0.246 Sum_probs=44.5
Q ss_pred chhHHhhhcCCCCCceEEEEcCccccceeeeEEEeCC------eEEeeCcCCCCceeeCcchhhhccccc-cCCcccce
Q 002320 226 MTVTELFETGLLDGVSVVYMGGIKFQASGLRGIIRDG------GILCSCSLCNGCRVIPPSKFEIHACKQ-YRRASQYI 297 (936)
Q Consensus 226 ~~vk~Ll~tglleg~~V~Y~~~~~~~~~~l~G~i~~~------GilC~C~~C~~~~v~s~s~FE~HAG~~-~~~p~~~I 297 (936)
.+...-..+.+++.+|-.+-.+..-++....|+++.- -|+|-|- -.-+||.+|=.|||.. .-||-.||
T Consensus 209 ~~~~~~~~~~~~~~mp~v~t~g~gpng~~i~g~ly~y~~~~~v~i~c~ch----g~~~~~~efv~h~~~~~~~~p~~hi 283 (284)
T PF07897_consen 209 TNSGGDGSRNMMEDMPCVSTTGDGPNGKRIEGFLYKYGKGEEVRIVCVCH----GSFLSPAEFVKHAGGGDVANPLRHI 283 (284)
T ss_pred ccccccccccccccCCceeeccCCCCCceeeEEEEEecCCCeEEEEEEec----CCCCCHHHHHHhcCCCCcCCchhcc
Confidence 3444444455667777555433212334556665544 3888886 4689999999999987 45899998
No 122
>PRK13834 putative autoinducer synthesis protein; Provisional
Probab=85.51 E-value=5 Score=42.79 Aligned_cols=118 Identities=18% Similarity=0.089 Sum_probs=78.9
Q ss_pred HHHHHHHHHHHhhcCCCcccCCcCCCcchhhhcc-CCCCccc-CCcEEEEEEeCCeEEEEEEEEEe--------------
Q 002320 761 RLLLSQAVAIFHDCFDPIVDSISGRDLIPSMVYG-NLRGQEF-GGMYCAILTVNSSVVSAGILRVF-------------- 824 (936)
Q Consensus 761 ~~~La~Al~If~EcFdPiid~rSgrDLIp~MVy~-~~~r~df-~GfY~~VL~~~~~vVsaA~lri~-------------- 824 (936)
...+.++...=++.|. + +=|=++.. --+ +.-..|. .-.|.+....+|++||+++|-..
T Consensus 15 ~~~l~~~~rLR~~VF~---~-elgW~~~~--~~g~E~D~yD~~~~~yll~~~~~g~vvG~~RLlptt~p~ml~~~fp~l~ 88 (207)
T PRK13834 15 ASLLKQMHRLRARVFG---G-RLGWDVSI--TDGEERDQFDDLKPTYILAISDSGRVAGCARLLPAIGPTMLAQVFPQLL 88 (207)
T ss_pred HHHHHHHHHHHHHHhc---c-ccCCCCCC--CCCcCccCCCCCCCEEEEEEeCCCeEEEEEecccCCCcchhhhhcHHhc
Confidence 3457778877778883 1 11222211 011 3334443 33676666677899999987321
Q ss_pred -------ccceeEeeeeeeccCCc---CCC----hhHHHHHHHHHHhhhcCceEEEecchhhHHHHhHhccCcEE
Q 002320 825 -------GQEVAELPLVATSKINH---GKG----YFQLLFACIEKLLSFLRVKSIVLPAAEEAESIWTDKFGFKK 885 (936)
Q Consensus 825 -------g~~~AEIp~vAT~~~~R---gqG----~gr~L~~~IE~~L~~lgV~~LvlpA~~ea~~~w~~kfGF~~ 885 (936)
..+++|+-++|++++++ +.+ +...|+..+-+.+...|++.++.-.......++.+ +||..
T Consensus 89 ~~~~~~~~~~v~E~SRf~V~~~~~~~~~~~~~~~~~~~L~~~~~~~a~~~Gi~~~~~v~~~~~~r~l~r-~G~~~ 162 (207)
T PRK13834 89 PAGRLNAHPAMIESSRFCVDTALAEGRGGGQLHEATLTMFAGIIEWSMANGYTEIVTATDLRFERILAR-AGWPM 162 (207)
T ss_pred CCCCCCCCCCEEEEeeeEEcccccccccccccCHHHHHHHHHHHHHHHHCCCCEEEEEECHHHHHHHHH-cCCCe
Confidence 15799999999998753 222 45789999999999999999987777666777755 88753
No 123
>PF00765 Autoind_synth: Autoinducer synthetase; InterPro: IPR001690 Bacterial species have many methods of controlling gene expression and cell growth. Regulation of gene expression in response to changes in cell density is termed quorum sensing [, ]. Quorum-sensing bacteria produce, release and respond to hormone-like molecules (autoinducers) that accumulate in the external environment as the cell population grows. Once a threshold of these molecules is reached, a signal transduction cascade is triggered that ultimately leads to behavioural changes in the bacterium []. Autoinducers are thus clearly important mediators of molecular communication. Conjugal transfer of Agrobacterium octopine-type Ti plasmids is activated by octopine, a metabolite released from plant tumours []. Octopine causes conjugal donors to secrete a pheromone, Agrobacterium autoinducer (AAI), and exogenous AAI further stimulates conjugation. The putative AAI synthase and an AAI-responsive transcriptional regulator have been found to be encoded by the Ti plasmid traI and traR genes, respectively. TraR and TraI are similar to the LuxR and LuxI regulatory proteins of Vibrio fischeri, and AAI is similar in structure to the diffusable V. fischeri autoinducer, the inducing ligand of LuxR. TraR activates target genes in the presence of AAI and also activates traR and traI themselves, creating two positive-feedback loops. TraR-AAI-mediated activation in wild-type Agrobacterium strains is enhanced by culturing on solid media, suggesting a possible role in cell density sensing []. Production of light by the marine bacterium V. fischeri and by recombinant hosts containing cloned lux genes is controlled by the density of the culture []. Density-dependent regulation of lux gene expression has been shown to require a locus consisting of the luxR and luxI genes. In these and other Gram-negative bacteria, N-(3-oxohexanoyl)-L-homoserine lactone (OHHL) acts as the autoinducer by binding to transcriptional regulatory proteins and activating them []. OHHL and related molecules, such as N-butanoyl- (BHL), N-hexanoyl- (HHL) and N-oxododecanoyl- (PAI) homoserine lactones, are produced by a family of proteins that share a high level of sequence similarity. Proteins which currently members of this family include: luxI from V. fischeri. ahyI and asaI from Aeromonas species, which synthesize BHL and whose targets are ahyR and asaR respectively. carI from Erwinia carotovora. The target of OHHL is carR which activates genes involved in the biosynthesis of carbapenem antibiotics. eagI from Enterobacter agglomerans. The target of OHHL is not yet known. esaI from Erwinia stewartii. expI from Erwinia carotovora. lasI from Pseudomonas aeruginosa, which synthesizes PAI and whose target is lasR which activates the transcription of the elastase gene. rhlI (or vsmI) from P. aeruginosa, which synthesizes BHL and HHL and whose target is rhlR. swrI from Serratia liquefaciens, which synthesizes BHL. yenI from Yersinia enterocolitica. ; GO: 0007165 signal transduction; PDB: 3P2H_A 3P2F_A 1KZF_A 1K4J_A 1RO5_A.
Probab=84.77 E-value=5.2 Score=41.87 Aligned_cols=116 Identities=20% Similarity=0.173 Sum_probs=75.3
Q ss_pred HHHHHHHHHHhhcCCCcccCCcCCCcchhhhcc-CCCCccc-CCcEEEEEEeCCeEEEEEEEEEec--------------
Q 002320 762 LLLSQAVAIFHDCFDPIVDSISGRDLIPSMVYG-NLRGQEF-GGMYCAILTVNSSVVSAGILRVFG-------------- 825 (936)
Q Consensus 762 ~~La~Al~If~EcFdPiid~rSgrDLIp~MVy~-~~~r~df-~GfY~~VL~~~~~vVsaA~lri~g-------------- 825 (936)
..|.+....=|+.|. | +=|=|+ +. .-+ ++-..|- .-.|.+.+ .+|+++|+++|....
T Consensus 8 ~~l~~~~rlR~~vFv---~-rlgW~v-~~-~dg~E~DqyD~~~~~ylv~~-~~g~v~g~~RLlptt~p~ML~~~F~~ll~ 80 (182)
T PF00765_consen 8 RLLEEMFRLRHRVFV---D-RLGWDV-PC-EDGMEIDQYDDPDAVYLVAL-DDGRVVGCARLLPTTGPYMLSDVFPHLLP 80 (182)
T ss_dssp HHHHHHHHHHHHHHT---T-CSCCCH-HC-CTSEE--TTGCTT-EEEEEE-ETTEEEEEEEEEETTS--HHHHCTGGGHT
T ss_pred HHHHHHHHHHHHHHH---H-hhCCCC-cC-CCCcEeeecCCCCCeEEEEE-ECCEEEEEeeeccCCCcchhhhHHHHHhC
Confidence 445566666667771 1 111121 11 111 3334443 34785554 569999999987644
Q ss_pred -------cceeEeeeeeeccCCcC------CChhHHHHHHHHHHhhhcCceEEEecchhhHHHHhHhccCcEE
Q 002320 826 -------QEVAELPLVATSKINHG------KGYFQLLFACIEKLLSFLRVKSIVLPAAEEAESIWTDKFGFKK 885 (936)
Q Consensus 826 -------~~~AEIp~vAT~~~~Rg------qG~gr~L~~~IE~~L~~lgV~~LvlpA~~ea~~~w~~kfGF~~ 885 (936)
.+++|+-+++++++.++ .-+...|+.++-+.+.+.|++.++.-+......++.+ +||..
T Consensus 81 ~~~~p~~~~vwE~SRf~v~~~~~~~~~~~~~~~~~~L~~~~~e~a~~~gi~~~v~V~~~~~~r~l~r-~G~~~ 152 (182)
T PF00765_consen 81 DGPAPRSPDVWELSRFCVDPDRRRSRAGSRSPVTMELLLGMVEFALSNGIRHIVGVVDPAMERILRR-AGWPV 152 (182)
T ss_dssp TS---SSTTEEEEEEEEE-HCCCHHCHSCC-THHHHHHHHHHHHHHCTT-SEEEEEEEHHHHHHHHH-CT-EE
T ss_pred CCCCCCCCcceeeeEEEEcccccccccccccHHHHHHHHHHHHHHHHCCCCEEEEEEChHHHHHHHH-cCCce
Confidence 57999999999987432 2357889999999999999999998888778888887 99874
No 124
>COG3981 Predicted acetyltransferase [General function prediction only]
Probab=83.66 E-value=2.1 Score=44.63 Aligned_cols=67 Identities=15% Similarity=0.162 Sum_probs=52.7
Q ss_pred cEEEEEEeCCeEEEEEEEEEeccc-----eeEeeeeeeccCCcCCChhHHHHHHHHHHhhhcCceEEEecchhh
Q 002320 804 MYCAILTVNSSVVSAGILRVFGQE-----VAELPLVATSKINHGKGYFQLLFACIEKLLSFLRVKSIVLPAAEE 872 (936)
Q Consensus 804 fY~~VL~~~~~vVsaA~lri~g~~-----~AEIp~vAT~~~~RgqG~gr~L~~~IE~~L~~lgV~~LvlpA~~e 872 (936)
.|-++-+ ++++||.-.+|-.-.+ ..+| --+|+|+.||+||++.++.-..+.++.+|+.++.+-+..+
T Consensus 70 ~y~~v~~-d~~ivG~i~lRh~Ln~~ll~~gGHI-GY~VrPseR~KGYA~emLkl~L~~ar~lgi~~Vlvtcd~d 141 (174)
T COG3981 70 TYWAVDE-DGQIVGFINLRHQLNDFLLEEGGHI-GYSVRPSERRKGYAKEMLKLALEKARELGIKKVLVTCDKD 141 (174)
T ss_pred eEEEEec-CCcEEEEEEeeeecchHHHhcCCcc-cceeChhhhccCHHHHHHHHHHHHHHHcCCCeEEEEeCCC
Confidence 5545555 8999999999864432 2222 2469999999999999999999999999999998877653
No 125
>PF13639 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 1IYM_A 2EP4_A 2ECT_A 2JRJ_A 2ECN_A 2ECM_A 3NG2_A 2EA6_A ....
Probab=83.02 E-value=0.12 Score=41.31 Aligned_cols=44 Identities=23% Similarity=0.573 Sum_probs=27.9
Q ss_pred cccccccccCCcCcccccCCCCcEEeccCCCCccccccCCCCCcCCCCccccccc
Q 002320 547 IICHCCNSEVSPSQFEAHADGGNLLPCDGCPRAFHKECASLSSIPQGDWYCKYCQ 601 (936)
Q Consensus 547 i~C~~C~~evSpS~FE~hadgG~Ll~CD~Cp~afH~~CL~L~~vP~g~W~Cp~C~ 601 (936)
+.|.+|..++.. +..++... |++.||..|+. .|-.....||.|+
T Consensus 1 d~C~IC~~~~~~--------~~~~~~l~-C~H~fh~~Ci~--~~~~~~~~CP~CR 44 (44)
T PF13639_consen 1 DECPICLEEFED--------GEKVVKLP-CGHVFHRSCIK--EWLKRNNSCPVCR 44 (44)
T ss_dssp -CETTTTCBHHT--------TSCEEEET-TSEEEEHHHHH--HHHHHSSB-TTTH
T ss_pred CCCcCCChhhcC--------CCeEEEcc-CCCeeCHHHHH--HHHHhCCcCCccC
Confidence 358899876542 44555444 99999999994 2222234888885
No 126
>PF14446 Prok-RING_1: Prokaryotic RING finger family 1
Probab=82.40 E-value=0.78 Score=39.21 Aligned_cols=34 Identities=26% Similarity=0.833 Sum_probs=29.8
Q ss_pred CccccccccccCCcCcccccCCCCcEEeccCCCCccccccCC
Q 002320 545 LGIICHCCNSEVSPSQFEAHADGGNLLPCDGCPRAFHKECAS 586 (936)
Q Consensus 545 ~~i~C~~C~~evSpS~FE~hadgG~Ll~CD~Cp~afH~~CL~ 586 (936)
.+-.|.+|++.+. ++++++.|..|...||-.|..
T Consensus 4 ~~~~C~~Cg~~~~--------~~dDiVvCp~CgapyHR~C~~ 37 (54)
T PF14446_consen 4 EGCKCPVCGKKFK--------DGDDIVVCPECGAPYHRDCWE 37 (54)
T ss_pred cCccChhhCCccc--------CCCCEEECCCCCCcccHHHHh
Confidence 4568999998876 488999999999999999983
No 127
>KOG1473 consensus Nucleosome remodeling factor, subunit NURF301/BPTF [Chromatin structure and dynamics; Transcription]
Probab=78.81 E-value=1 Score=57.25 Aligned_cols=45 Identities=27% Similarity=0.742 Sum_probs=39.8
Q ss_pred CccccccCCCCCCCCCCCCceeeCCCcCcccCCCccccCcCCcccCCCCCcceecCCch
Q 002320 647 SGCLLCRGCDFSKSGFGPRTILLCDQCEREFHVGCLKKHKMADLRELPKGKWFCCMDCS 705 (936)
Q Consensus 647 ~~C~iC~~~d~s~sg~~~g~LI~CDqC~rayHv~CL~p~~l~~L~evPeg~WfC~~~C~ 705 (936)
..|.+|.+ .+.+++|..|++.||..|+.+ ++.+.|...|-| .-|.
T Consensus 345 dhcrf~~d---------~~~~lc~Et~prvvhlEcv~h----P~~~~~s~~~e~-evc~ 389 (1414)
T KOG1473|consen 345 DHCRFCHD---------LGDLLCCETCPRVVHLECVFH----PRFAVPSAFWEC-EVCN 389 (1414)
T ss_pred ccccccCc---------ccceeecccCCceEEeeecCC----ccccCCCccchh-hhhh
Confidence 45999985 578999999999999999987 788999999999 7785
No 128
>KOG2535 consensus RNA polymerase II elongator complex, subunit ELP3/histone acetyltransferase [Chromatin structure and dynamics; Transcription]
Probab=78.49 E-value=6.2 Score=45.11 Aligned_cols=67 Identities=16% Similarity=0.290 Sum_probs=48.4
Q ss_pred EEEEeccceeEeeeeeecc-CCcCCChhHHHHHHHHHHhhhcC-ceEEEecchhhHHHHhHhccCcEEcCHHH
Q 002320 820 ILRVFGQEVAELPLVATSK-INHGKGYFQLLFACIEKLLSFLR-VKSIVLPAAEEAESIWTDKFGFKKIDPEL 890 (936)
Q Consensus 820 ~lri~g~~~AEIp~vAT~~-~~RgqG~gr~L~~~IE~~L~~lg-V~~LvlpA~~ea~~~w~~kfGF~~i~~~~ 890 (936)
-|+++|. -+|.-+-++ .||.||||.+||+..|+.+++.+ -..+-+-+.....+.|.+ |||..-++-.
T Consensus 481 ELHVYGs---~vpv~~rDp~KfQHQG~GtLLmeEAERIAr~EHgS~KiavISGVGtR~YY~k-lGY~LdGPYM 549 (554)
T KOG2535|consen 481 ELHVYGS---VVPVHSRDPTKFQHQGFGTLLMEEAERIAREEHGSGKIAVISGVGTRNYYRK-LGYELDGPYM 549 (554)
T ss_pred eeeecce---eeecccCCchhhhhcchhhHHHHHHHHHHHHhcCCCceEEEeccchHHHHHh-hCeeecChhH
Confidence 3455553 244445555 69999999999999999998764 345666666677778887 9998766543
No 129
>PF07227 DUF1423: Protein of unknown function (DUF1423); InterPro: IPR004082 A total of 715 potential protein-coding genes have been identified in the nucleotide sequence of Arabidopsis thaliana chromosome 5, with an average gene density of 1 gene per 4001 bp []. Amongst the gene products is a well-conserved family of 130.7kDa proteins that share no sequence similarity with any other known proteins, other than in plants. The sequences are characterised by an N-terminal domain of variable length, a central cysteine-rich region and a relatively acidic C-terminal domain. The sequences may possess a PHD finger.
Probab=77.95 E-value=2.3 Score=49.89 Aligned_cols=56 Identities=21% Similarity=0.586 Sum_probs=38.6
Q ss_pred cccccCCCCCCCCCCCCceeeCCCcCcccCCCccccCcCCc----ccC---CCCCcceecCCchhhH
Q 002320 649 CLLCRGCDFSKSGFGPRTILLCDQCEREFHVGCLKKHKMAD----LRE---LPKGKWFCCMDCSRIN 708 (936)
Q Consensus 649 C~iC~~~d~s~sg~~~g~LI~CDqC~rayHv~CL~p~~l~~----L~e---vPeg~WfC~~~C~~I~ 708 (936)
|.+|.+.|++. ++-.+|.||.|.-+.|++|.=.+.+.. ... ..++.++| ..|.+..
T Consensus 131 C~iC~kfD~~~---n~~~Wi~Cd~CgH~cH~dCALr~~~i~~G~s~~g~~g~~d~~f~C-~~C~~~s 193 (446)
T PF07227_consen 131 CCICSKFDDNK---NTCSWIGCDVCGHWCHLDCALRHELIGTGPSVKGSIGTLDMQFHC-RACGKTS 193 (446)
T ss_pred ccccCCcccCC---CCeeEEeccCCCceehhhhhcccccccCCccCCCCCccCceEEEc-cCCCChh
Confidence 88999987654 456799999999999999975443221 111 12346777 9997553
No 130
>cd04264 DUF619-NAGS DUF619 domain of various N-acetylglutamate Synthases of the fungal arginine-biosynthetic pathway and urea cycle found in humans and fish. DUF619-NAGS: This family includes the DUF619 domain of various N-acetylglutamate synthases (NAGS) of the urea cycle found in humans and fish, the DUF619 domain of the NAGS of the fungal arginine-biosynthetic pathway (FABP), as well as the DUF619 domain present in C-terminal of a NAG kinase-like domain in a limited number of predicted NAGSs found in bacteria and Dictyostelium. Ureogenic NAGS is a mitochondrial enzyme catalyzing the formation of NAG from acetylcoenzyme A and L-glutamate. NAGS is an essential allosteric activator of carbamylphosphate synthase I, the first and rate limiting enzyme of the urea cycle. Domain architecture of ureogenic and fungal NAGS consists of an N-terminal NAG kinase-like domain and a C-terminal DUF619 domain. The DUF619 domain function has yet to be characterized.
Probab=77.10 E-value=5.2 Score=38.16 Aligned_cols=49 Identities=20% Similarity=0.232 Sum_probs=40.8
Q ss_pred EeCCeEEEEEEEEEec--cceeEeeeeeeccCCcCCChhHHHHHHHHHHhh
Q 002320 810 TVNSSVVSAGILRVFG--QEVAELPLVATSKINHGKGYFQLLFACIEKLLS 858 (936)
Q Consensus 810 ~~~~~vVsaA~lri~g--~~~AEIp~vAT~~~~RgqG~gr~L~~~IE~~L~ 858 (936)
+.++...++|.+..-+ .+++-|-.+|+.+..||+|+++.|+.+|-+...
T Consensus 14 y~~e~y~~~aIvt~~~~~~~~~yLdKfaV~~~~~g~gvad~vf~~i~~d~~ 64 (99)
T cd04264 14 YLSEGYNAAAIVTYEGVNNGVPYLDKFAVSSSAQGEGTSDALWRRLRRDFP 64 (99)
T ss_pred EEeCCceEEEEEeccCCCCCceEEEEEEEchhhhhcChHHHHHHHHHhhCC
Confidence 4556677888886644 589999999999999999999999999988743
No 131
>PF11793 FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A.
Probab=74.18 E-value=1.8 Score=38.50 Aligned_cols=52 Identities=25% Similarity=0.398 Sum_probs=19.5
Q ss_pred cccccccccCCcCcccccCCCCcEEecc--CCCCccccccCC--CCC-------cCCCCcccccccccc
Q 002320 547 IICHCCNSEVSPSQFEAHADGGNLLPCD--GCPRAFHKECAS--LSS-------IPQGDWYCKYCQNMF 604 (936)
Q Consensus 547 i~C~~C~~evSpS~FE~hadgG~Ll~CD--~Cp~afH~~CL~--L~~-------vP~g~W~Cp~C~~~~ 604 (936)
..|.+|...+.. .+.-..+.|+ .|...||..||. +.. ...-.+.||.|...+
T Consensus 3 ~~C~IC~~~~~~------~~~~p~~~C~n~~C~~~fH~~CL~~wf~~~~~~~~~~~~~~G~CP~C~~~i 65 (70)
T PF11793_consen 3 LECGICYSYRLD------DGEIPDVVCPNPSCGKKFHLLCLSEWFLSLEKSRQSFIPIFGECPYCSSPI 65 (70)
T ss_dssp -S-SSS--SS-T------T-----B--S-TT----B-SGGGHHHHHHHHSSS-TTT--EEE-TTT-SEE
T ss_pred CCCCcCCcEecC------CCCcCceEcCCcccCCHHHHHHHHHHHHHcccCCeeecccccCCcCCCCee
Confidence 569999864431 0122348898 899999999994 111 111236799998654
No 132
>PF13832 zf-HC5HC2H_2: PHD-zinc-finger like domain
Probab=72.91 E-value=1.6 Score=41.32 Aligned_cols=33 Identities=24% Similarity=0.687 Sum_probs=27.7
Q ss_pred CccccccCCCCCCCCCCCCceeeCCC--cCcccCCCccccCcC
Q 002320 647 SGCLLCRGCDFSKSGFGPRTILLCDQ--CEREFHVGCLKKHKM 687 (936)
Q Consensus 647 ~~C~iC~~~d~s~sg~~~g~LI~CDq--C~rayHv~CL~p~~l 687 (936)
..|.+|+.. .|..+.|.. |.++||+.|....+.
T Consensus 56 ~~C~iC~~~--------~G~~i~C~~~~C~~~fH~~CA~~~g~ 90 (110)
T PF13832_consen 56 LKCSICGKS--------GGACIKCSHPGCSTAFHPTCARKAGL 90 (110)
T ss_pred CcCcCCCCC--------CceeEEcCCCCCCcCCCHHHHHHCCC
Confidence 459999973 578999998 999999999987653
No 133
>PF02474 NodA: Nodulation protein A (NodA); InterPro: IPR003484 Rhizobial nodulation (Nod) factors are signalling molecules secreted by root-nodulating rhizobia in response to flavanoids excreted by the host plant. They induce various symbiotic responses on the roots of the leguminous host plant at low concentrations, and are required for successful infection. Rhizobial Nod factors are lipo-chitooligosaccharides carrying various substituents which are important determinants of host specificity []. NodA is an N-acyl transferase which specifies the transfer of an acyl chain to the oligosaccharide backbone of Nod factor. Allelic variation of the nodA gene can contribute to the determination of host range [].; GO: 0016746 transferase activity, transferring acyl groups
Probab=72.62 E-value=5.5 Score=41.69 Aligned_cols=51 Identities=20% Similarity=0.050 Sum_probs=43.9
Q ss_pred eeEeeeeeeccCCcCCChhHHHHHHHHHHhhhcCceEEEecchhhHHHHhHh
Q 002320 828 VAELPLVATSKINHGKGYFQLLFACIEKLLSFLRVKSIVLPAAEEAESIWTD 879 (936)
Q Consensus 828 ~AEIp~vAT~~~~RgqG~gr~L~~~IE~~L~~lgV~~LvlpA~~ea~~~w~~ 879 (936)
+||+.+.|++|+.+|.|+++.+ ..+--.|+.|||.--|--......+..++
T Consensus 85 VaElGLygVRpDLEGlGi~hs~-r~m~PvLq~LgVPF~FGtVR~al~~Hv~R 135 (196)
T PF02474_consen 85 VAELGLYGVRPDLEGLGISHSM-RVMYPVLQELGVPFGFGTVRHALRNHVER 135 (196)
T ss_pred EEEEEEEEeeccccccccchhh-hhhhhHHHhcCCCeecccchHHHHHHHHH
Confidence 8999999999999999999976 68888999999998777766666666666
No 134
>PF14446 Prok-RING_1: Prokaryotic RING finger family 1
Probab=69.77 E-value=3.1 Score=35.64 Aligned_cols=35 Identities=23% Similarity=0.564 Sum_probs=28.1
Q ss_pred CccccccCCCCCCCCCCCCceeeCCCcCcccCCCccccCc
Q 002320 647 SGCLLCRGCDFSKSGFGPRTILLCDQCEREFHVGCLKKHK 686 (936)
Q Consensus 647 ~~C~iC~~~d~s~sg~~~g~LI~CDqC~rayHv~CL~p~~ 686 (936)
..|.+|++.- ..++.++.|..|...||..|....+
T Consensus 6 ~~C~~Cg~~~-----~~~dDiVvCp~CgapyHR~C~~~~g 40 (54)
T PF14446_consen 6 CKCPVCGKKF-----KDGDDIVVCPECGAPYHRDCWEKAG 40 (54)
T ss_pred ccChhhCCcc-----cCCCCEEECCCCCCcccHHHHhhCC
Confidence 4599999752 2378899999999999999996543
No 135
>PF13771 zf-HC5HC2H: PHD-like zinc-binding domain
Probab=69.74 E-value=1.8 Score=39.44 Aligned_cols=32 Identities=31% Similarity=0.766 Sum_probs=26.3
Q ss_pred CccccccCCCCCCCCCCCCceeeCCC--cCcccCCCccccCc
Q 002320 647 SGCLLCRGCDFSKSGFGPRTILLCDQ--CEREFHVGCLKKHK 686 (936)
Q Consensus 647 ~~C~iC~~~d~s~sg~~~g~LI~CDq--C~rayHv~CL~p~~ 686 (936)
..|.+|++. .|..|.|.. |.+.||+.|....+
T Consensus 37 ~~C~~C~~~--------~Ga~i~C~~~~C~~~fH~~CA~~~~ 70 (90)
T PF13771_consen 37 LKCSICKKK--------GGACIGCSHPGCSRSFHVPCARKAG 70 (90)
T ss_pred CCCcCCCCC--------CCeEEEEeCCCCCcEEChHHHccCC
Confidence 359999963 368999985 99999999998754
No 136
>KOG4628 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=66.38 E-value=4.7 Score=46.31 Aligned_cols=47 Identities=23% Similarity=0.576 Sum_probs=32.9
Q ss_pred cccccccccCCcCcccccCCCCcEEeccCCCCccccccCC--CCCcCCCCccccccccccc
Q 002320 547 IICHCCNSEVSPSQFEAHADGGNLLPCDGCPRAFHKECAS--LSSIPQGDWYCKYCQNMFE 605 (936)
Q Consensus 547 i~C~~C~~evSpS~FE~hadgG~Ll~CD~Cp~afH~~CL~--L~~vP~g~W~Cp~C~~~~~ 605 (936)
+.|.+|.+.+. .|+.+.==-|.+.||..|++ |.++ .-+||.|+....
T Consensus 230 ~~CaIClEdY~---------~GdklRiLPC~H~FH~~CIDpWL~~~---r~~CPvCK~di~ 278 (348)
T KOG4628|consen 230 DTCAICLEDYE---------KGDKLRILPCSHKFHVNCIDPWLTQT---RTFCPVCKRDIR 278 (348)
T ss_pred ceEEEeecccc---------cCCeeeEecCCCchhhccchhhHhhc---CccCCCCCCcCC
Confidence 79999997554 34444446688999999997 2222 346999997543
No 137
>COG5628 Predicted acetyltransferase [General function prediction only]
Probab=66.11 E-value=23 Score=35.29 Aligned_cols=71 Identities=11% Similarity=0.096 Sum_probs=53.7
Q ss_pred EEEeCCeEEEEEEEE--Eec-----cceeEeeeeeeccCCcCCChhHHHHHHHHHHhhhcCceEEEecchhhHHHHhHhc
Q 002320 808 ILTVNSSVVSAGILR--VFG-----QEVAELPLVATSKINHGKGYFQLLFACIEKLLSFLRVKSIVLPAAEEAESIWTDK 880 (936)
Q Consensus 808 VL~~~~~vVsaA~lr--i~g-----~~~AEIp~vAT~~~~RgqG~gr~L~~~IE~~L~~lgV~~LvlpA~~ea~~~w~~k 880 (936)
++..+|.+||-+.+- ++. -.++|+= +..-|||+|+||+..++|-.+...+ -+-.+++--..|.+||++
T Consensus 41 ~~~~~~~~igf~l~L~~~~~~~~iD~~~~efF---Ii~k~~~~GvGR~aaK~If~~~~g~-w~Va~i~EN~PA~~fwK~- 115 (143)
T COG5628 41 LFRIGGLPVGFALVLDLAHSPTPIDRAVAEFF---IVRKHRRRGVGRAAAKAIFGSAWGV-WQVATVRENTPARAFWKR- 115 (143)
T ss_pred EEEECCceeeeeeeecccCCCCcccccchheE---eeehhhccchhHHHHHHHHHHhhce-EEEEEeccCChhHHHHHh-
Confidence 456788899988753 111 2345543 4457999999999999999987776 677888999999999999
Q ss_pred cCc
Q 002320 881 FGF 883 (936)
Q Consensus 881 fGF 883 (936)
+-+
T Consensus 116 ~~~ 118 (143)
T COG5628 116 VAE 118 (143)
T ss_pred hhc
Confidence 543
No 138
>cd04265 DUF619-NAGS-U DUF619 domain of various N-acetylglutamate Synthases (NAGS) of the urea (U) cycle of humans and fish. This family includes the DUF619 domain of various N-acetylglutamate synthases (NAGS) of the urea cycle found in humans and fish, the DUF619 domain of the NAGS of the fungal arginine-biosynthetic pathway (FABP), as well as the DUF619 domain present in C-terminal of a NAG kinase-like domain in a limited number of predicted NAGSs found in bacteria and Dictyostelium. Ureogenic NAGS is a mitochondrial enzyme catalyzing the formation of NAG from acetylcoenzyme A and L-glutamate. NAGS is an essential allosteric activator of carbamylphosphate synthase I, the first and rate limiting enzyme of the urea cycle. Domain architecture of ureogenic and fungal NAGS consists of an N-terminal NAG kinase-like domain and a C-terminal DUF619 domain. The DUF619 domain function has yet to be characterized.
Probab=62.45 E-value=15 Score=35.16 Aligned_cols=44 Identities=20% Similarity=0.172 Sum_probs=35.6
Q ss_pred EEEEEEEEEec-cceeEeeeeeeccCCcCCChhHHHHHHHHHHhh
Q 002320 815 VVSAGILRVFG-QEVAELPLVATSKINHGKGYFQLLFACIEKLLS 858 (936)
Q Consensus 815 vVsaA~lri~g-~~~AEIp~vAT~~~~RgqG~gr~L~~~IE~~L~ 858 (936)
.=++|.+..-. .+++-|-.+|+.+..||+|+++.|+.+|-+...
T Consensus 20 y~~~aivt~~~~~~~~yLdKfaV~~~~~g~gv~d~vf~~i~~d~~ 64 (99)
T cd04265 20 YNAAAIVTNEEVDGVPYLDKFAVSSSAQGEGTGEALWRRLRRDFP 64 (99)
T ss_pred CcEEEEEeccCCCCceEEEEEEEchhhhhcChHHHHHHHHHhhCC
Confidence 33666665433 479999999999999999999999999988754
No 139
>TIGR03019 pepcterm_femAB FemAB-related protein, PEP-CTERM system-associated. Members of this protein family are found always as part of extended exopolysaccharide biosynthesis loci in bacteria. In nearly every case, these loci contain determinants for the processing of the PEP-CTERM proposed C-terminal protein sorting signal. This family shows remote, local sequence similarity to the FemAB protein family (see pfam02388), whose members
Probab=61.51 E-value=18 Score=40.66 Aligned_cols=80 Identities=9% Similarity=0.036 Sum_probs=60.8
Q ss_pred EEEE-eCCeEEEEEEEEEeccceeEeeeeeeccCCcCCChhHHHHHHHHHHhhhcCceEEEecchhh--HHHHhHhccCc
Q 002320 807 AILT-VNSSVVSAGILRVFGQEVAELPLVATSKINHGKGYFQLLFACIEKLLSFLRVKSIVLPAAEE--AESIWTDKFGF 883 (936)
Q Consensus 807 ~VL~-~~~~vVsaA~lri~g~~~AEIp~vAT~~~~RgqG~gr~L~~~IE~~L~~lgV~~LvlpA~~e--a~~~w~~kfGF 883 (936)
++++ .++++|+++.+..++ +.......++.++++..+..-.|+-.+.+.+.+.|++.+=+..... -.-.++++|||
T Consensus 198 ~~a~~~~g~~va~~l~~~~~-~~~~~~~~g~~~~~~~~~~~~lL~w~~i~~a~~~G~~~fDfG~s~~~~G~~~FK~~~G~ 276 (330)
T TIGR03019 198 LTVRLGDGVVASAVLSFYFR-DEVLPYYAGGLREARDVAANDLMYWELMRRACERGLRVFDFGRSKRGTGPFKFKKNWGF 276 (330)
T ss_pred EEEEeCCCCEEEEEEEEEeC-CEEEEEeccChHHHHhhChHHHHHHHHHHHHHHCCCcEEEcCCCCCCCccHHHHhcCCC
Confidence 4456 688888888876655 4455557889999999999999999999999999999988765432 22346667899
Q ss_pred EEcC
Q 002320 884 KKID 887 (936)
Q Consensus 884 ~~i~ 887 (936)
.+..
T Consensus 277 ~~~~ 280 (330)
T TIGR03019 277 EPQP 280 (330)
T ss_pred eecc
Confidence 8654
No 140
>PF15446 zf-PHD-like: PHD/FYVE-zinc-finger like domain
Probab=57.40 E-value=5.9 Score=41.20 Aligned_cols=34 Identities=21% Similarity=0.570 Sum_probs=26.0
Q ss_pred cccccCCCCCCCCCCCCceeeCCCcCcccCCCccccC
Q 002320 649 CLLCRGCDFSKSGFGPRTILLCDQCEREFHVGCLKKH 685 (936)
Q Consensus 649 C~iC~~~d~s~sg~~~g~LI~CDqC~rayHv~CL~p~ 685 (936)
|..|+..+ .....|.||.|..|-.+||..||.+.
T Consensus 2 C~~C~~~g---~~~~kG~Lv~CQGCs~sYHk~CLG~R 35 (175)
T PF15446_consen 2 CDTCGYEG---DDRNKGPLVYCQGCSSSYHKACLGPR 35 (175)
T ss_pred cccccCCC---CCccCCCeEEcCccChHHHhhhcCCc
Confidence 77786421 12346799999999999999999874
No 141
>KOG1734 consensus Predicted RING-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=56.16 E-value=2.8 Score=46.36 Aligned_cols=56 Identities=21% Similarity=0.431 Sum_probs=35.2
Q ss_pred CCccccccccccCCcCcccccCCCCcEE---eccCCCCccccccCCCCCcCCCCcccccccccc
Q 002320 544 GLGIICHCCNSEVSPSQFEAHADGGNLL---PCDGCPRAFHKECASLSSIPQGDWYCKYCQNMF 604 (936)
Q Consensus 544 ~~~i~C~~C~~evSpS~FE~hadgG~Ll---~CD~Cp~afH~~CL~L~~vP~g~W~Cp~C~~~~ 604 (936)
-++.+|.+|++.+..+. |.+-++ .=-.|.+.||..|+.--.+-...-.||.|+.++
T Consensus 222 l~d~vCaVCg~~~~~s~-----~eegvienty~LsCnHvFHEfCIrGWcivGKkqtCPYCKekV 280 (328)
T KOG1734|consen 222 LSDSVCAVCGQQIDVSV-----DEEGVIENTYKLSCNHVFHEFCIRGWCIVGKKQTCPYCKEKV 280 (328)
T ss_pred CCcchhHhhcchheeec-----chhhhhhhheeeecccchHHHhhhhheeecCCCCCchHHHHh
Confidence 35788999998766543 222111 112589999999994112223356899998643
No 142
>COG3818 Predicted acetyltransferase, GNAT superfamily [General function prediction only]
Probab=53.31 E-value=35 Score=34.50 Aligned_cols=56 Identities=13% Similarity=0.256 Sum_probs=43.2
Q ss_pred eccCCcCCChhHHHHHHHHHHhhhcCceEEEecc----hhhHHHHhHhccCcEEcCHHHH
Q 002320 836 TSKINHGKGYFQLLFACIEKLLSFLRVKSIVLPA----AEEAESIWTDKFGFKKIDPELL 891 (936)
Q Consensus 836 T~~~~RgqG~gr~L~~~IE~~L~~lgV~~LvlpA----~~ea~~~w~~kfGF~~i~~~~~ 891 (936)
+-...||.|.+|+|...+-..+..-|-.+|+|-. ...|...+-..|||+++++.++
T Consensus 92 VA~~aRGrG~aRalY~Dlf~~Ae~agy~~~tCEVn~DppnpasdaFHaalGF~eVG~a~i 151 (167)
T COG3818 92 VASRARGRGVARALYADLFSYAELAGYPYLTCEVNLDPPNPASDAFHAALGFHEVGQATI 151 (167)
T ss_pred EEecccccchHHHHHHHHHHHHHhcCCceEEEEecCCCCChHHHHHhhhcCceEccceEE
Confidence 3344689999999999999999988888888742 3345556666799999998553
No 143
>PHA02929 N1R/p28-like protein; Provisional
Probab=52.12 E-value=5.7 Score=43.48 Aligned_cols=54 Identities=19% Similarity=0.340 Sum_probs=33.2
Q ss_pred CccccccccccCCcCcccccCCCCcEEeccCCCCccccccCCCCCcCCCCcccccccccc
Q 002320 545 LGIICHCCNSEVSPSQFEAHADGGNLLPCDGCPRAFHKECASLSSIPQGDWYCKYCQNMF 604 (936)
Q Consensus 545 ~~i~C~~C~~evSpS~FE~hadgG~Ll~CD~Cp~afH~~CL~L~~vP~g~W~Cp~C~~~~ 604 (936)
.+..|.+|...+.... ........-..|.+.||..|+. .|-...-.||.|+..+
T Consensus 173 ~~~eC~ICle~~~~~~----~~~~~~~vl~~C~H~FC~~CI~--~Wl~~~~tCPlCR~~~ 226 (238)
T PHA02929 173 KDKECAICMEKVYDKE----IKNMYFGILSNCNHVFCIECID--IWKKEKNTCPVCRTPF 226 (238)
T ss_pred CCCCCccCCcccccCc----cccccceecCCCCCcccHHHHH--HHHhcCCCCCCCCCEe
Confidence 4678999997543110 0000122234788999999994 3434456899999764
No 144
>PF04377 ATE_C: Arginine-tRNA-protein transferase, C terminus; InterPro: IPR007472 Arginine-tRNA-protein transferase catalyses the post-translational conjugation of arginine to the N terminus of a protein. In eukaryotes, this functions as part of the N terminus rule pathway of protein degradation by conjugating a destabilising amino acid to the N-terminal aspartate or glutamate of a protein, targeting the protein for ubiquitin-dependent proteolysis. N-terminal cysteine is sometimes modified []. In Saccharomyces cerevisiae, Cys20, 23, 94 and/or 95 are thought to be important for activity []. Of these, only Cys 94 appears to be completely conserved in this family. This entry represents the C-terminal region of the enzyme arginine-tRNA-protein transferase, found in both eukaryotic and prokaryotic enzymes.; GO: 0004057 arginyltransferase activity, 0016598 protein arginylation
Probab=50.13 E-value=73 Score=31.84 Aligned_cols=63 Identities=6% Similarity=0.043 Sum_probs=51.7
Q ss_pred CcEEEEEEeCCeEEEEEEEEEeccceeEeeeeeeccCCcCCChhHHHHHHHHHHhhhcCceEEE
Q 002320 803 GMYCAILTVNSSVVSAGILRVFGQEVAELPLVATSKINHGKGYFQLLFACIEKLLSFLRVKSIV 866 (936)
Q Consensus 803 GfY~~VL~~~~~vVsaA~lri~g~~~AEIp~vAT~~~~RgqG~gr~L~~~IE~~L~~lgV~~Lv 866 (936)
|-+-+-...+|++|+||.+.+....+.-|-.+= +|++...++|...+..-.+.++.+|.+.+.
T Consensus 38 ~t~~~~~~~~~kLiav~v~D~l~~glSaVY~fy-DPd~~~~SlG~~~iL~eI~~a~~~~l~y~Y 100 (128)
T PF04377_consen 38 GTYHLEYRLDGKLIAVAVVDILPDGLSAVYTFY-DPDYSKRSLGTYSILREIELARELGLPYYY 100 (128)
T ss_pred CCEEEEEEeCCeEEEEEEeecccchhhheeeee-CCCccccCcHHHHHHHHHHHHHHcCCCEEe
Confidence 444455568999999999998877766665543 789999999999988888999999999998
No 145
>PRK00756 acyltransferase NodA; Provisional
Probab=48.00 E-value=29 Score=36.34 Aligned_cols=40 Identities=25% Similarity=0.121 Sum_probs=34.4
Q ss_pred ceeEeeeeeeccCCcCCChhHHHHHHHHHHhhhcCceEEEe
Q 002320 827 EVAELPLVATSKINHGKGYFQLLFACIEKLLSFLRVKSIVL 867 (936)
Q Consensus 827 ~~AEIp~vAT~~~~RgqG~gr~L~~~IE~~L~~lgV~~Lvl 867 (936)
=+||+.+.|++|+..|.|++..+ ..+--.|+.|||.--|-
T Consensus 84 LVaElGLygVRpDLEGlGi~~S~-r~m~PvLq~LgVPF~FG 123 (196)
T PRK00756 84 LVAELGLYGVRPDLEGLGIAHSI-RAMYPVLQELGVPFAFG 123 (196)
T ss_pred eEEEeeeeeeccccccccchhhH-HHHHHHHHhcCCCeecc
Confidence 38999999999999999998866 68888899999975443
No 146
>KOG4135 consensus Predicted phosphoglucosamine acetyltransferase [Carbohydrate transport and metabolism]
Probab=47.31 E-value=40 Score=34.80 Aligned_cols=58 Identities=14% Similarity=0.213 Sum_probs=37.0
Q ss_pred eeEeeeeeeccCCcCCChhHHHHHHHHHHhhh-cCceEEEecc--hhhH-HHHhHhccCcEEc
Q 002320 828 VAELPLVATSKINHGKGYFQLLFACIEKLLSF-LRVKSIVLPA--AEEA-ESIWTDKFGFKKI 886 (936)
Q Consensus 828 ~AEIp~vAT~~~~RgqG~gr~L~~~IE~~L~~-lgV~~LvlpA--~~ea-~~~w~~kfGF~~i 886 (936)
++|+-+.---|..||+|+|+..+.++...+.+ +++-....-. +... ..++. ||+|.-+
T Consensus 107 ~gE~EvMIAEP~~RgKG~G~eav~~ml~y~~s~l~l~Ky~vkig~~nk~sl~lFk-k~~f~q~ 168 (185)
T KOG4135|consen 107 TGEVEVMIAEPRGRGKGIGTEAVRAMLAYAYSVLKLDKYEVKIGMDNKPSLRLFK-KFLFTQV 168 (185)
T ss_pred eeeEEEEEecccccCCCccHHHHHHHHHHHHHHhhhheEEEEecCCCchHHHHHH-Hhhheee
Confidence 45566666678999999999999888887544 3444444333 2222 33444 4888754
No 147
>PF13880 Acetyltransf_13: ESCO1/2 acetyl-transferase
Probab=47.01 E-value=14 Score=33.30 Aligned_cols=27 Identities=15% Similarity=0.146 Sum_probs=23.4
Q ss_pred eeeeeeccCCcCCChhHHHHHHHHHHh
Q 002320 831 LPLVATSKINHGKGYFQLLFACIEKLL 857 (936)
Q Consensus 831 Ip~vAT~~~~RgqG~gr~L~~~IE~~L 857 (936)
|.+|=|.+.+|++|+.+.|++++-+..
T Consensus 8 I~RIWV~~~~RR~GIAt~Lld~ar~~~ 34 (70)
T PF13880_consen 8 ISRIWVSPSHRRKGIATRLLDAARENF 34 (70)
T ss_pred eEEEEeChhhhhhhHHHHHHHHHHHhc
Confidence 567778999999999999999987763
No 148
>PRK14852 hypothetical protein; Provisional
Probab=46.71 E-value=52 Score=42.84 Aligned_cols=84 Identities=17% Similarity=0.132 Sum_probs=65.3
Q ss_pred EEEEEEeCCeEEEEEEEEEec----------------------cceeEeeeeeeccCCcCCChhHHHHHHHHHHhhhcCc
Q 002320 805 YCAILTVNSSVVSAGILRVFG----------------------QEVAELPLVATSKINHGKGYFQLLFACIEKLLSFLRV 862 (936)
Q Consensus 805 Y~~VL~~~~~vVsaA~lri~g----------------------~~~AEIp~vAT~~~~RgqG~gr~L~~~IE~~L~~lgV 862 (936)
++++....+++|++.++.+-. ..++|+-.+|+++..|.+-+--.|+..+-......++
T Consensus 76 ~~~i~k~~~~~l~T~t~~~ds~~~Gl~~D~lf~~eLd~lr~~Gr~v~EvtrLa~d~~~~~~~l~~~l~~~~~~y~~~~~~ 155 (989)
T PRK14852 76 SVFIFKSYHDVLCTLTHIPDSGLFGLPMDTLYKPEVDALRAQGRNVVEVGALATQYSRRWTNLMVFLAKAMFQYSMMSEV 155 (989)
T ss_pred eEEEeccCCcEEEEEEEecCCcccCcCHHHHHHHHHHHHHHcCCeEEeeehheechhhcccchhHHHHHHHHHHHHHcCC
Confidence 345555657777777765531 4699999999988777766555666666555677899
Q ss_pred eEEEecchhhHHHHhHhccCcEEcCH
Q 002320 863 KSIVLPAAEEAESIWTDKFGFKKIDP 888 (936)
Q Consensus 863 ~~LvlpA~~ea~~~w~~kfGF~~i~~ 888 (936)
..+++---++=..||++-|||+.+++
T Consensus 156 dd~~i~VnPkH~~FY~r~l~f~~ig~ 181 (989)
T PRK14852 156 DDILVTVNPKHVKFYTDIFLFKPFGE 181 (989)
T ss_pred CeEEEEECcchHHHHHHHhCCccccc
Confidence 99999999999999999999999986
No 149
>KOG2752 consensus Uncharacterized conserved protein, contains N-recognin-type Zn-finger [General function prediction only]
Probab=46.64 E-value=17 Score=41.13 Aligned_cols=101 Identities=17% Similarity=0.291 Sum_probs=55.2
Q ss_pred CCCcEEeccCCCCccccccCCCCCcCCCCcccccccccccccccccccccccccccccccCchhhccchheeeccccccc
Q 002320 566 DGGNLLPCDGCPRAFHKECASLSSIPQGDWYCKYCQNMFERKRFLQHDANAVEAGRVSGVDSVEQITKRCIRIVKNLEAE 645 (936)
Q Consensus 566 dgG~Ll~CD~Cp~afH~~CL~L~~vP~g~W~Cp~C~~~~~~e~~v~~n~~aia~Gr~~Gvd~ieqi~~rciR~vkd~e~e 645 (936)
+++....|-.|.-.+|..-..+.-+-.+.+.|--|...+.+..+ +. ...+-.++..+. ...+
T Consensus 64 ~~~~agvC~~C~~~CH~~H~lveL~tKR~FrCDCg~sk~g~~sc---~l--~~~~~~~n~~N~-------------YNhN 125 (345)
T KOG2752|consen 64 APEMAGVCYACSLSCHDGHELVELYTKRNFRCDCGNSKFGRCSC---NL--LEDKDAENSENL-------------YNHN 125 (345)
T ss_pred ChhhceeEEEeeeeecCCceeeeccccCCccccccccccccccc---cc--ccccccccchhh-------------hhhh
Confidence 45677888888877777666554455677888777665543221 00 000000000000 0000
Q ss_pred --CCccccccCCCCCCCCCCCCceeeCCCcCcccC-CCccccC
Q 002320 646 --LSGCLLCRGCDFSKSGFGPRTILLCDQCEREFH-VGCLKKH 685 (936)
Q Consensus 646 --~~~C~iC~~~d~s~sg~~~g~LI~CDqC~rayH-v~CL~p~ 685 (936)
..+| .|...........++.|++|--|+-||| -+|++..
T Consensus 126 fqG~~C-~Cd~~Ypdp~~~~e~~m~QC~iCEDWFHce~c~~~~ 167 (345)
T KOG2752|consen 126 FQGLFC-KCDTPYPDPVRTEEGEMLQCVICEDWFHCEGCMQAK 167 (345)
T ss_pred hcceeE-EecCCCCCccccccceeeeEEeccchhcccccCccc
Confidence 0112 3444332222235789999999999999 8999764
No 150
>PF13901 DUF4206: Domain of unknown function (DUF4206)
Probab=46.21 E-value=19 Score=38.40 Aligned_cols=47 Identities=34% Similarity=0.784 Sum_probs=34.6
Q ss_pred cCCcccccccccc--CCcCcccccCCCCcEEeccCCCCccccccCCCCCcCCCCcccccccc
Q 002320 543 NGLGIICHCCNSE--VSPSQFEAHADGGNLLPCDGCPRAFHKECASLSSIPQGDWYCKYCQN 602 (936)
Q Consensus 543 ~~~~i~C~~C~~e--vSpS~FE~hadgG~Ll~CD~Cp~afH~~CL~L~~vP~g~W~Cp~C~~ 602 (936)
...|.+|.+|+.. +-| | +-.....|..|...||..|..- -.||.|..
T Consensus 149 ~~kGfiCe~C~~~~~IfP--F----~~~~~~~C~~C~~v~H~~C~~~-------~~CpkC~R 197 (202)
T PF13901_consen 149 QQKGFICEICNSDDIIFP--F----QIDTTVRCPKCKSVFHKSCFRK-------KSCPKCAR 197 (202)
T ss_pred HhCCCCCccCCCCCCCCC--C----CCCCeeeCCcCccccchhhcCC-------CCCCCcHh
Confidence 3567889999853 333 3 2367899999999999999951 23999963
No 151
>COG5194 APC11 Component of SCF ubiquitin ligase and anaphase-promoting complex [Posttranslational modification, protein turnover, chaperones / Cell division and chromosome partitioning]
Probab=46.04 E-value=6.1 Score=36.48 Aligned_cols=56 Identities=18% Similarity=0.376 Sum_probs=33.7
Q ss_pred cccccccccCCcC----cccccCCCCcEEeccCCCCccccccCCCCCcCCCCcccccccccc
Q 002320 547 IICHCCNSEVSPS----QFEAHADGGNLLPCDGCPRAFHKECASLSSIPQGDWYCKYCQNMF 604 (936)
Q Consensus 547 i~C~~C~~evSpS----~FE~hadgG~Ll~CD~Cp~afH~~CL~L~~vP~g~W~Cp~C~~~~ 604 (936)
+.|.+|+..+..- +|....++.=-+.=..|.++||.-|+. .|-...-.||.+++.+
T Consensus 21 d~CaICRnhim~~C~eCq~~~~~~~eC~v~wG~CnHaFH~HCI~--rWL~Tk~~CPld~q~w 80 (88)
T COG5194 21 DVCAICRNHIMGTCPECQFGMTPGDECPVVWGVCNHAFHDHCIY--RWLDTKGVCPLDRQTW 80 (88)
T ss_pred chhhhhhccccCcCcccccCCCCCCcceEEEEecchHHHHHHHH--HHHhhCCCCCCCCcee
Confidence 6788888654322 222211222122224699999999994 3334467899998765
No 152
>KOG1493 consensus Anaphase-promoting complex (APC), subunit 11 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=45.25 E-value=3.3 Score=37.89 Aligned_cols=59 Identities=20% Similarity=0.396 Sum_probs=35.1
Q ss_pred ccccccccccCCcCccc--ccCCCCcEEeccCCCCccccccCC-CCCcCCCCccccccccccc
Q 002320 546 GIICHCCNSEVSPSQFE--AHADGGNLLPCDGCPRAFHKECAS-LSSIPQGDWYCKYCQNMFE 605 (936)
Q Consensus 546 ~i~C~~C~~evSpS~FE--~hadgG~Ll~CD~Cp~afH~~CL~-L~~vP~g~W~Cp~C~~~~~ 605 (936)
+..|++|+-++..+.=. .-.|.=.|+.- .|.++||.-|+. .-..|...-.||.|++.++
T Consensus 20 ~e~CGiCRm~Fdg~Cp~Ck~PgDdCPLv~G-~C~h~fh~hCI~~wl~~~tsq~~CPmcRq~~~ 81 (84)
T KOG1493|consen 20 DETCGICRMPFDGCCPDCKLPGDDCPLVWG-YCLHAFHAHCILKWLNTPTSQGQCPMCRQTWQ 81 (84)
T ss_pred CCccceEecccCCcCCCCcCCCCCCccHHH-HHHHHHHHHHHHHHhcCccccccCCcchheeE
Confidence 44899998754322100 00011122222 577889999984 4456667789999998653
No 153
>PLN02400 cellulose synthase
Probab=44.26 E-value=29 Score=45.26 Aligned_cols=58 Identities=24% Similarity=0.616 Sum_probs=45.6
Q ss_pred cCCccccccccccCCcCcccccCCCCcEEeccCCCCccccccCCCCCcCCCCcccccccccccc
Q 002320 543 NGLGIICHCCNSEVSPSQFEAHADGGNLLPCDGCPRAFHKECASLSSIPQGDWYCKYCQNMFER 606 (936)
Q Consensus 543 ~~~~i~C~~C~~evSpS~FE~hadgG~Ll~CD~Cp~afH~~CL~L~~vP~g~W~Cp~C~~~~~~ 606 (936)
.-++.+|.+|+..+-. .++|.-.+-|+.|.-...-.|+.- +..+|.=.||.|+..+.+
T Consensus 33 ~~~gqiCqICGD~VG~-----t~dGe~FVAC~eCaFPVCRpCYEY-ERkeGnq~CPQCkTrYkR 90 (1085)
T PLN02400 33 NLNGQICQICGDDVGV-----TETGDVFVACNECAFPVCRPCYEY-ERKDGTQCCPQCKTRYRR 90 (1085)
T ss_pred ccCCceeeecccccCc-----CCCCCEEEEEccCCCccccchhhe-ecccCCccCcccCCcccc
Confidence 4578899999976543 337777899999988888888854 567788999999987654
No 154
>PF14569 zf-UDP: Zinc-binding RING-finger; PDB: 1WEO_A.
Probab=43.54 E-value=5.1 Score=36.73 Aligned_cols=57 Identities=23% Similarity=0.612 Sum_probs=25.7
Q ss_pred cCCccccccccccCCcCcccccCCCCcEEeccCCCCccccccCCCCCcCCCCccccccccccc
Q 002320 543 NGLGIICHCCNSEVSPSQFEAHADGGNLLPCDGCPRAFHKECASLSSIPQGDWYCKYCQNMFE 605 (936)
Q Consensus 543 ~~~~i~C~~C~~evSpS~FE~hadgG~Ll~CD~Cp~afH~~CL~L~~vP~g~W~Cp~C~~~~~ 605 (936)
.-++.+|.+|+..+-. .++|.-.+.|..|.-...-.|+.. +..+|.-.||.|+..+.
T Consensus 6 ~~~~qiCqiCGD~VGl-----~~~Ge~FVAC~eC~fPvCr~CyEY-Erkeg~q~CpqCkt~yk 62 (80)
T PF14569_consen 6 NLNGQICQICGDDVGL-----TENGEVFVACHECAFPVCRPCYEY-ERKEGNQVCPQCKTRYK 62 (80)
T ss_dssp --SS-B-SSS--B--B------SSSSB--S-SSS-----HHHHHH-HHHTS-SB-TTT--B--
T ss_pred hcCCcccccccCcccc-----CCCCCEEEEEcccCCccchhHHHH-HhhcCcccccccCCCcc
Confidence 3578899999976543 347778899999977666677743 45567889999987654
No 155
>PF13444 Acetyltransf_5: Acetyltransferase (GNAT) domain
Probab=43.13 E-value=49 Score=30.98 Aligned_cols=24 Identities=21% Similarity=0.254 Sum_probs=19.8
Q ss_pred cceeEeeeeeeccCCcCCChhHHH
Q 002320 826 QEVAELPLVATSKINHGKGYFQLL 849 (936)
Q Consensus 826 ~~~AEIp~vAT~~~~RgqG~gr~L 849 (936)
..++||.++|+.++||+...-..|
T Consensus 76 ~~~~EisRl~V~~~~R~~~~~~~L 99 (101)
T PF13444_consen 76 RRVAEISRLCVHPEYRRRKVLLLL 99 (101)
T ss_pred CcEEEeehheECHhHCCChHHHHH
Confidence 368999999999999998775554
No 156
>KOG1701 consensus Focal adhesion adaptor protein Paxillin and related LIM proteins [Signal transduction mechanisms]
Probab=42.32 E-value=4.6 Score=47.17 Aligned_cols=36 Identities=33% Similarity=0.798 Sum_probs=28.2
Q ss_pred ccccccccCCcCcccccCCCCcEEeccCCCCccccccCCCCCcCCCCccccccccc
Q 002320 548 ICHCCNSEVSPSQFEAHADGGNLLPCDGCPRAFHKECASLSSIPQGDWYCKYCQNM 603 (936)
Q Consensus 548 ~C~~C~~evSpS~FE~hadgG~Ll~CD~Cp~afH~~CL~L~~vP~g~W~Cp~C~~~ 603 (936)
+|.-|+++|+ |+-.-|..-++.||..|. .|..|...
T Consensus 276 iC~~C~K~V~----------g~~~ac~Am~~~fHv~CF----------tC~~C~r~ 311 (468)
T KOG1701|consen 276 ICAFCHKTVS----------GQGLAVEAMDQLFHVQCF----------TCRTCRRQ 311 (468)
T ss_pred hhhhcCCccc----------CcchHHHHhhhhhcccce----------ehHhhhhh
Confidence 8999999886 455568888899999997 47777654
No 157
>PF10497 zf-4CXXC_R1: Zinc-finger domain of monoamine-oxidase A repressor R1; InterPro: IPR018866 R1 is a transcription factor repressor that inhibits monoamine oxidase A gene expression. This domain is a four-CXXC zinc finger putative DNA-binding domain found at the C-terminal end of R1. The domain carries 12 cysteines of which four pairs are of the CXXC type [].
Probab=41.67 E-value=12 Score=36.08 Aligned_cols=49 Identities=22% Similarity=0.609 Sum_probs=32.2
Q ss_pred CCccccccccccCCcCcccccCCCCcEEec------cCC---CCccccccCC------C-CCcCCCCcccccccc
Q 002320 544 GLGIICHCCNSEVSPSQFEAHADGGNLLPC------DGC---PRAFHKECAS------L-SSIPQGDWYCKYCQN 602 (936)
Q Consensus 544 ~~~i~C~~C~~evSpS~FE~hadgG~Ll~C------D~C---p~afH~~CL~------L-~~vP~g~W~Cp~C~~ 602 (936)
..|..|..|.+... +....| ..| ...|--.||- + +.+.+..|.||.|+.
T Consensus 5 ~~g~~CHqCrqKt~----------~~~~~C~~~~~~~~C~~~~~~fC~~CL~~ryge~~~ev~~~~~W~CP~Crg 69 (105)
T PF10497_consen 5 VNGKTCHQCRQKTL----------DFKTICTGHWKNSSCRGCRGKFCGGCLRNRYGENVEEVLEDPNWKCPKCRG 69 (105)
T ss_pred CCCCCchhhcCCCC----------CCceEcCCCCCCCCCccCcceehHhHHHHHHhhhHHHHhcCCceECCCCCC
Confidence 46788999986422 223344 445 7788888873 2 223567899999974
No 158
>PF01853 MOZ_SAS: MOZ/SAS family; InterPro: IPR002717 Moz is a monocytic leukemia Zn_finger protein and the SAS protein from Saccharomyces cerevisiae (Baker's yeast) is involved in silencing the Hmr locus. These proteins were reported to be homologous to acetyltransferases [] but this similarity is not supported by standard sequence analysis.; GO: 0016747 transferase activity, transferring acyl groups other than amino-acyl groups, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 3TO6_A 1MJA_A 1MJ9_A 3TO7_A 3TO9_A 1MJB_A 1FY7_A 2OZU_A 2RC4_A 2OU2_A ....
Probab=41.40 E-value=87 Score=33.43 Aligned_cols=85 Identities=16% Similarity=0.185 Sum_probs=47.5
Q ss_pred HHHHHHHHHHHhhcCCCcccCCcCCCcchhhhccCCCCcccCC--cEEEEEEeCCeEEEEEEEEE--eccceeEeeeeee
Q 002320 761 RLLLSQAVAIFHDCFDPIVDSISGRDLIPSMVYGNLRGQEFGG--MYCAILTVNSSVVSAGILRV--FGQEVAELPLVAT 836 (936)
Q Consensus 761 ~~~La~Al~If~EcFdPiid~rSgrDLIp~MVy~~~~r~df~G--fY~~VL~~~~~vVsaA~lri--~g~~~AEIp~vAT 836 (936)
.....+-|-.|-.+| +|.+| +| .|..+ ||++.-..++...-+|=+-- ...+---+--|-|
T Consensus 25 ~~~yCqnLcLlaKLF---Ld~Kt--------ly-----ydv~~F~FYVl~e~d~~g~h~vGyFSKEk~s~~~~NLsCIl~ 88 (188)
T PF01853_consen 25 HKLYCQNLCLLAKLF---LDHKT--------LY-----YDVDPFLFYVLTEKDDDGFHIVGYFSKEKESWDNNNLSCILT 88 (188)
T ss_dssp SHHHHHHHHHHHHTT----SSGC--------CT-----T-STTEEEEEEEEEETTEEEEEEEEEEESS-TT-EEESEEEE
T ss_pred CchHHHHHHHHHHHH---hhCeE--------EE-----eecCceEEEEEEEecCccceeEEEEEEEecccCCeeEeehhh
Confidence 367788899999999 33322 11 12333 67554444442111221111 1112234556789
Q ss_pred ccCCcCCChhHHHHHHHHHHhhhcC
Q 002320 837 SKINHGKGYFQLLFACIEKLLSFLR 861 (936)
Q Consensus 837 ~~~~RgqG~gr~L~~~IE~~L~~lg 861 (936)
.|.||++|||+.|++.-=.+.+..|
T Consensus 89 lP~yQrkGyG~~LI~fSY~LSr~e~ 113 (188)
T PF01853_consen 89 LPPYQRKGYGRFLIDFSYELSRREG 113 (188)
T ss_dssp -GGGTTSSHHHHHHHHHHHHHHHTT
T ss_pred cchhhhcchhhhhhhhHHHHhhccC
Confidence 9999999999999997666665554
No 159
>cd00162 RING RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H)
Probab=40.83 E-value=8.4 Score=29.24 Aligned_cols=31 Identities=19% Similarity=0.465 Sum_probs=20.9
Q ss_pred EEeccCCCCccccccCCCCCcC-CCCcccccccc
Q 002320 570 LLPCDGCPRAFHKECASLSSIP-QGDWYCKYCQN 602 (936)
Q Consensus 570 Ll~CD~Cp~afH~~CL~L~~vP-~g~W~Cp~C~~ 602 (936)
.+.-..|.+.||..|+. .+- .+...||.|+.
T Consensus 12 ~~~~~~C~H~~c~~C~~--~~~~~~~~~Cp~C~~ 43 (45)
T cd00162 12 PVVLLPCGHVFCRSCID--KWLKSGKNTCPLCRT 43 (45)
T ss_pred ceEecCCCChhcHHHHH--HHHHhCcCCCCCCCC
Confidence 33445589999999995 111 14677999974
No 160
>PF13832 zf-HC5HC2H_2: PHD-zinc-finger like domain
Probab=40.37 E-value=15 Score=34.80 Aligned_cols=31 Identities=35% Similarity=0.952 Sum_probs=26.2
Q ss_pred CccccccccccCCcCcccccCCCCcEEeccC--CCCccccccCC
Q 002320 545 LGIICHCCNSEVSPSQFEAHADGGNLLPCDG--CPRAFHKECAS 586 (936)
Q Consensus 545 ~~i~C~~C~~evSpS~FE~hadgG~Ll~CD~--Cp~afH~~CL~ 586 (936)
....|.+|++ ..|-.+.|.. |..+||..|..
T Consensus 54 ~~~~C~iC~~-----------~~G~~i~C~~~~C~~~fH~~CA~ 86 (110)
T PF13832_consen 54 FKLKCSICGK-----------SGGACIKCSHPGCSTAFHPTCAR 86 (110)
T ss_pred cCCcCcCCCC-----------CCceeEEcCCCCCCcCCCHHHHH
Confidence 4578999996 4688999986 99999999983
No 161
>PF01233 NMT: Myristoyl-CoA:protein N-myristoyltransferase, N-terminal domain; InterPro: IPR022676 Myristoyl-CoA:protein N-myristoyltransferase (2.3.1.97 from EC) (Nmt) [] is the enzyme responsible for transferring a myristate group on the N-terminal glycine of a number of cellular eukaryotics and viral proteins. Nmt is a monomeric protein of about 50 to 60kDa whose sequence appears to be well conserved. The N and C-terminal domains of NMT are structurally similar, each adopting an acyl-CoA N-acyltransferase-like fold. This entry represents the N-terminal region. ; GO: 0004379 glycylpeptide N-tetradecanoyltransferase activity; PDB: 2P6G_B 2P6F_F 2P6E_A 1IIC_A 1IID_A 2NMT_A 4A33_A 3H5Z_A 4A2Z_A 2WSA_A ....
Probab=39.20 E-value=2.4e+02 Score=29.55 Aligned_cols=112 Identities=15% Similarity=0.221 Sum_probs=70.7
Q ss_pred cCceEEEccCCCCChhhHHHHHHHHHHHhhcCCCcccCCcCCCcchhhhcc-C-----CCCcccCCcEEEEEEe--CCeE
Q 002320 744 IDVRWRLLSGKAATPETRLLLSQAVAIFHDCFDPIVDSISGRDLIPSMVYG-N-----LRGQEFGGMYCAILTV--NSSV 815 (936)
Q Consensus 744 ~di~W~lLsgk~~s~e~~~~La~Al~If~EcFdPiid~rSgrDLIp~MVy~-~-----~~r~df~GfY~~VL~~--~~~v 815 (936)
.+|.|..+. -.+...|.+.-+.+.|-+. -|. |-.-..-|+ + +..-.|...|.+.+.. ++++
T Consensus 22 ~gF~W~~~d-----l~d~~~l~ely~lL~~nYV--EDd----d~~fRf~YS~efL~WaL~pPg~~~~whiGVR~~~~~kL 90 (162)
T PF01233_consen 22 DGFEWSTLD-----LNDDEELKELYELLNENYV--EDD----DNMFRFDYSKEFLKWALKPPGWKKEWHIGVRVKSSKKL 90 (162)
T ss_dssp TTEEEEE-------TTSHHHHHHHHHHHHHHSS--BTT----TSSEEE---HHHHHHHHTSTT--GGGEEEEEETTTTEE
T ss_pred CCCEEEecC-----CCCHHHHHHHHHHHHhcCc--cCC----cceEEeeCCHHHHhheeeCcCCccceEEEEEECCCCEE
Confidence 468898763 2345667888888888882 121 111112233 2 2233344445555554 5788
Q ss_pred EEE-----EEEEEecc--ceeEeeeeeeccCCcCCChhHHHHHHHHHHhhhcCceEEE
Q 002320 816 VSA-----GILRVFGQ--EVAELPLVATSKINHGKGYFQLLFACIEKLLSFLRVKSIV 866 (936)
Q Consensus 816 Vsa-----A~lri~g~--~~AEIp~vAT~~~~RgqG~gr~L~~~IE~~L~~lgV~~Lv 866 (936)
||- +.++|.+. ..+||=++.+++.+|.+++.=.|+.+|=+.+-..||-.-+
T Consensus 91 vgfIsaip~~irv~~~~~~~~eINFLCVhKklRskrlAPvLIkEItRRvn~~gI~qAv 148 (162)
T PF01233_consen 91 VGFISAIPATIRVRDKVIKMVEINFLCVHKKLRSKRLAPVLIKEITRRVNLQGIWQAV 148 (162)
T ss_dssp EEEEEEEEEEEEETTEEEEEEEEEEEEE-GGGTTSSHHHHHHHHHHHHHHTTT--EEE
T ss_pred EEEEccceEEEEEeeeEeeeeeEEEEeecHhHhhcCCcHHHHHHHHHHhhhcCceeee
Confidence 773 46777774 7899999999999999999999999999998888876544
No 162
>PLN02638 cellulose synthase A (UDP-forming), catalytic subunit
Probab=38.00 E-value=21 Score=46.49 Aligned_cols=58 Identities=26% Similarity=0.688 Sum_probs=45.6
Q ss_pred cCCccccccccccCCcCcccccCCCCcEEeccCCCCccccccCCCCCcCCCCcccccccccccc
Q 002320 543 NGLGIICHCCNSEVSPSQFEAHADGGNLLPCDGCPRAFHKECASLSSIPQGDWYCKYCQNMFER 606 (936)
Q Consensus 543 ~~~~i~C~~C~~evSpS~FE~hadgG~Ll~CD~Cp~afH~~CL~L~~vP~g~W~Cp~C~~~~~~ 606 (936)
.-++.+|.+|+.++-. .++|.-.+-|..|.-...-.|+.- +..+|.=.||.|+..+.+
T Consensus 14 ~~~~qiCqICGD~vg~-----~~~Ge~FVAC~eC~FPVCrpCYEY-Er~eG~q~CPqCktrYkr 71 (1079)
T PLN02638 14 HGGGQVCQICGDNVGK-----TVDGEPFVACDVCAFPVCRPCYEY-ERKDGNQSCPQCKTKYKR 71 (1079)
T ss_pred ccCCceeeecccccCc-----CCCCCEEEEeccCCCccccchhhh-hhhcCCccCCccCCchhh
Confidence 3467899999976544 337777899999988888889853 567888999999987653
No 163
>KOG1428 consensus Inhibitor of type V adenylyl cyclases/Neuronal presynaptic protein Highwire/PAM/RPM-1 [Signal transduction mechanisms]
Probab=37.51 E-value=5.6 Score=52.12 Aligned_cols=32 Identities=31% Similarity=0.713 Sum_probs=22.1
Q ss_pred CCCCccccccCC--C------CCcCCCCcccccccccccc
Q 002320 575 GCPRAFHKECAS--L------SSIPQGDWYCKYCQNMFER 606 (936)
Q Consensus 575 ~Cp~afH~~CL~--L------~~vP~g~W~Cp~C~~~~~~ 606 (936)
+|.+.||+.|.. | ..+--|-..||.|.+++.+
T Consensus 3506 ~C~HiFHlqC~R~vLE~RW~GPRItF~FisCPiC~n~InH 3545 (3738)
T KOG1428|consen 3506 DCSHIFHLQCCRRVLENRWLGPRITFGFISCPICKNKINH 3545 (3738)
T ss_pred CCccchhHHHHHHHHHhcccCCeeEEeeeecccccchhhh
Confidence 599999999984 1 1222244579999987643
No 164
>PF02591 DUF164: Putative zinc ribbon domain; InterPro: IPR003743 This entry describes proteins of unknown function.
Probab=37.38 E-value=12 Score=31.61 Aligned_cols=34 Identities=26% Similarity=0.681 Sum_probs=28.3
Q ss_pred CccccccccccCCcCcccccCCCCcEEeccCCCC
Q 002320 545 LGIICHCCNSEVSPSQFEAHADGGNLLPCDGCPR 578 (936)
Q Consensus 545 ~~i~C~~C~~evSpS~FE~hadgG~Ll~CD~Cp~ 578 (936)
++..|.-|+-.++|+.+..-..+.+++.|+.|++
T Consensus 21 ~~~~C~gC~~~l~~~~~~~i~~~~~i~~Cp~CgR 54 (56)
T PF02591_consen 21 EGGTCSGCHMELPPQELNEIRKGDEIVFCPNCGR 54 (56)
T ss_pred eCCccCCCCEEcCHHHHHHHHcCCCeEECcCCCc
Confidence 4558999999999887776666789999999986
No 165
>PLN02436 cellulose synthase A
Probab=37.34 E-value=24 Score=45.88 Aligned_cols=58 Identities=22% Similarity=0.628 Sum_probs=45.2
Q ss_pred cCCccccccccccCCcCcccccCCCCcEEeccCCCCccccccCCCCCcCCCCcccccccccccc
Q 002320 543 NGLGIICHCCNSEVSPSQFEAHADGGNLLPCDGCPRAFHKECASLSSIPQGDWYCKYCQNMFER 606 (936)
Q Consensus 543 ~~~~i~C~~C~~evSpS~FE~hadgG~Ll~CD~Cp~afH~~CL~L~~vP~g~W~Cp~C~~~~~~ 606 (936)
.-++.+|.+|+.++-.. ++|.-.+-|..|.-.....|+.- +..+|.-.||.|+..+.+
T Consensus 33 ~~~~~iCqICGD~Vg~t-----~dGe~FVACn~C~fpvCr~Cyey-er~eg~~~Cpqckt~Y~r 90 (1094)
T PLN02436 33 ELSGQTCQICGDEIELT-----VDGEPFVACNECAFPVCRPCYEY-ERREGNQACPQCKTRYKR 90 (1094)
T ss_pred ccCCccccccccccCcC-----CCCCEEEeeccCCCccccchhhh-hhhcCCccCcccCCchhh
Confidence 34678999999866433 37777899999988888888853 567788999999987653
No 166
>KOG1246 consensus DNA-binding protein jumonji/RBP2/SMCY, contains JmjC domain [General function prediction only]
Probab=36.85 E-value=25 Score=45.39 Aligned_cols=48 Identities=31% Similarity=0.877 Sum_probs=38.2
Q ss_pred ccccccCCCCCCCCCCCCceeeCCCcCcccCCCccccCcCCcccCCCCCcceecCCchhh
Q 002320 648 GCLLCRGCDFSKSGFGPRTILLCDQCEREFHVGCLKKHKMADLRELPKGKWFCCMDCSRI 707 (936)
Q Consensus 648 ~C~iC~~~d~s~sg~~~g~LI~CDqC~rayHv~CL~p~~l~~L~evPeg~WfC~~~C~~I 707 (936)
.|..|.+.. ....+ .|+.|...||..|+.+ ++..+|.+.|.| ..|...
T Consensus 157 ~~~~~~k~~------~~~~~-~~~~~~~~~~~~~~~~----~~~~~~~~~~~~-~~~~~~ 204 (904)
T KOG1246|consen 157 QCNTCSKGK------EEKLL-LCDSCDDSYHTYCLRP----PLTRVPDGDWRC-PKCIPT 204 (904)
T ss_pred hhhccccCC------Cccce-ecccccCcccccccCC----CCCcCCcCcccC-Cccccc
Confidence 488888642 23334 9999999999999987 788899999998 777644
No 167
>PF12261 T_hemolysin: Thermostable hemolysin; InterPro: IPR022050 This family of proteins is found in bacteria. Proteins in this family are typically between 200 and 228 amino acids in length. T_hemolysin is a pore-forming toxin of bacteria, able to lyse erythrocytes from a number of mammalian species.
Probab=36.20 E-value=67 Score=33.90 Aligned_cols=63 Identities=21% Similarity=0.316 Sum_probs=50.0
Q ss_pred ceeEeeeeeeccCCcCCChhHHHHHHHHHHhhhcCceEEEecchhhHHHHhHhccCcE--EcCHHHHHHH
Q 002320 827 EVAELPLVATSKINHGKGYFQLLFACIEKLLSFLRVKSIVLPAAEEAESIWTDKFGFK--KIDPELLSIY 894 (936)
Q Consensus 827 ~~AEIp~vAT~~~~RgqG~gr~L~~~IE~~L~~lgV~~LvlpA~~ea~~~w~~kfGF~--~i~~~~~~~~ 894 (936)
.++||.=+|.. +.|.++.|+..|-..|...|++-++.-|.........+ +|+. .+.+.+-.++
T Consensus 86 ~IvEvGnLAs~----~~g~~~~l~~~l~~~L~~~g~~w~vfTaT~~lr~~~~r-lgl~~~~La~Ad~~rl 150 (179)
T PF12261_consen 86 QIVEVGNLASF----SPGAARLLFAALAQLLAQQGFEWVVFTATRQLRNLFRR-LGLPPTVLADADPSRL 150 (179)
T ss_pred heeEeechhhc----CcccHHHHHHHHHHHHHHCCCCEEEEeCCHHHHHHHHH-cCCCceeccccCHhHc
Confidence 46777766655 48999999999999999999999999999999999988 7765 4444444443
No 168
>PF11793 FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A.
Probab=36.18 E-value=18 Score=32.18 Aligned_cols=34 Identities=26% Similarity=0.710 Sum_probs=12.9
Q ss_pred ccccccCCCCCCCCCCCCceeeCC--CcCcccCCCcccc
Q 002320 648 GCLLCRGCDFSKSGFGPRTILLCD--QCEREFHVGCLKK 684 (936)
Q Consensus 648 ~C~iC~~~d~s~sg~~~g~LI~CD--qC~rayHv~CL~p 684 (936)
-|.||-..-. ..+....+.|+ .|.+.||..||..
T Consensus 4 ~C~IC~~~~~---~~~~~p~~~C~n~~C~~~fH~~CL~~ 39 (70)
T PF11793_consen 4 ECGICYSYRL---DDGEIPDVVCPNPSCGKKFHLLCLSE 39 (70)
T ss_dssp S-SSS--SS----TT-----B--S-TT----B-SGGGHH
T ss_pred CCCcCCcEec---CCCCcCceEcCCcccCCHHHHHHHHH
Confidence 3889986421 11233568998 9999999999965
No 169
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=35.75 E-value=16 Score=43.20 Aligned_cols=46 Identities=22% Similarity=0.346 Sum_probs=32.1
Q ss_pred CccccccccccCCcCcccccCCCCcEEeccCCCCccccccCCCCCcCCCCcccccccc
Q 002320 545 LGIICHCCNSEVSPSQFEAHADGGNLLPCDGCPRAFHKECASLSSIPQGDWYCKYCQN 602 (936)
Q Consensus 545 ~~i~C~~C~~evSpS~FE~hadgG~Ll~CD~Cp~afH~~CL~L~~vP~g~W~Cp~C~~ 602 (936)
+-..|.+|.+-+++|- ..+.-.-|.++||-.|+. .|. +-.||-|+.
T Consensus 174 ELPTCpVCLERMD~s~--------~gi~t~~c~Hsfh~~cl~--~w~--~~scpvcR~ 219 (493)
T KOG0804|consen 174 ELPTCPVCLERMDSST--------TGILTILCNHSFHCSCLM--KWW--DSSCPVCRY 219 (493)
T ss_pred cCCCcchhHhhcCccc--------cceeeeecccccchHHHh--hcc--cCcChhhhh
Confidence 5577999997666432 345556788999999994 332 456888874
No 170
>KOG1298 consensus Squalene monooxygenase [Lipid transport and metabolism]
Probab=33.68 E-value=33 Score=40.45 Aligned_cols=186 Identities=22% Similarity=0.261 Sum_probs=96.4
Q ss_pred cccccccchhhHHhhhcccccceeEEeEEeeEEEEEEeccCCCCCCccccchhhhhhhhhcccccchHHHHHHHhhhccc
Q 002320 21 LPQAGIQASDCVKAACENVRCKRFKVTKVNGFIVYSRVKRSRFSNSDDLLEDDVIDKRINSKIHEGRINKVVKNVLNENG 100 (936)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (936)
|-+.|++ |||+.. .-.+|+|+-+|--=+.-.-+-...-.++|+- -...|.||..|-+.+..
T Consensus 97 L~~LGl~--Dcve~I---------DAQ~v~Gy~ifk~gk~v~~pyP~~~f~~d~~----GrsFhnGRFvq~lR~ka---- 157 (509)
T KOG1298|consen 97 LSKLGLE--DCVEGI---------DAQRVTGYAIFKDGKEVDLPYPLKNFPSDPS----GRSFHNGRFVQRLRKKA---- 157 (509)
T ss_pred HHHhCHH--HHhhcc---------cceEeeeeEEEeCCceeeccCCCcCCCCCcc----cceeeccHHHHHHHHHH----
Confidence 3444554 898643 3456899999964333332222222345543 44689999999887732
Q ss_pred chhhhHHhhh-hhhcchHHHHHHHH--hhCCCCCCccCCCCCccceeecCCCCcccc--cCccc---c--ccCCcccCCC
Q 002320 101 ILESVVEEEN-QLVQMTVENVIEET--VKGKKAPICKEEPISKVECFPRKEGGSEVS--NGLNK---K--CLKRPSAMKP 170 (936)
Q Consensus 101 ~~~~~~~~~~-~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~---~--~~~trs~~k~ 170 (936)
..++| ++.|=||..++||- +||.+ ..+++|.+.+ .++.. . -+|+||+-++
T Consensus 158 -----~slpNV~~eeGtV~sLlee~gvvkGV~---------------yk~k~gee~~~~ApLTvVCDGcfSnlRrsL~~~ 217 (509)
T KOG1298|consen 158 -----ASLPNVRLEEGTVKSLLEEEGVVKGVT---------------YKNKEGEEVEAFAPLTVVCDGCFSNLRRSLCDP 217 (509)
T ss_pred -----hcCCCeEEeeeeHHHHHhccCeEEeEE---------------EecCCCceEEEecceEEEecchhHHHHHHhcCC
Confidence 12222 22233555444432 33322 3444444443 34432 2 4788999999
Q ss_pred CCCcccccccccc--CCCCC--------------------ccchhhhhhhhcCCCCCCCCcccccccc-ccccCCCCCch
Q 002320 171 KVEPVEVLVTQSE--GFGNE--------------------SMSLIEVEAIAEGSALTSPKKNLELKMS-KKISLNKKPMT 227 (936)
Q Consensus 171 k~e~~~~~~~~~~--~~~~~--------------------~~~~~~~~~~~~~~~~~~~~~~~~~k~~-kk~~~~~~p~~ 227 (936)
||+++.+.-.+.- +-... +++++++--. -.++.-|+-.|.||+.. |+..--.+|..
T Consensus 218 ~v~~V~S~fVG~vl~N~~l~~p~hghvIL~~pspil~Y~ISStEvRcl~~-v~g~~~Psi~~gem~~~mk~~v~PqiP~~ 296 (509)
T KOG1298|consen 218 KVEEVPSYFVGLVLKNCRLPAPNHGHVILSKPSPILVYQISSTEVRCLVD-VPGQKLPSIANGEMATYMKESVAPQIPEK 296 (509)
T ss_pred cccccchheeeeeecCCCCCCCCcceEEecCCCcEEEEEecchheEEEEe-cCcccCCcccchhHHHHHHHhhCcCCCHH
Confidence 9998765443321 11000 0111111111 11334455667676543 44445568999
Q ss_pred hHHhhhcCC----CCCceEEEEc
Q 002320 228 VTELFETGL----LDGVSVVYMG 246 (936)
Q Consensus 228 vk~Ll~tgl----leg~~V~Y~~ 246 (936)
+|+-+..++ +--+|=+||.
T Consensus 297 lR~~F~~av~~g~irsmpn~~mp 319 (509)
T KOG1298|consen 297 LRESFLEAVDEGNIRSMPNSSMP 319 (509)
T ss_pred HHHHHHHHhhccchhcCccccCC
Confidence 999865444 4445556654
No 171
>PF05502 Dynactin_p62: Dynactin p62 family; InterPro: IPR008603 Dynactin is a multi-subunit complex and a required cofactor for most, or all, o f the cellular processes powered by the microtubule-based motor cytoplasmic dyn ein. p62 binds directly to the Arp1 subunit of dynactin [, ].
Probab=33.66 E-value=40 Score=40.57 Aligned_cols=33 Identities=24% Similarity=0.567 Sum_probs=23.5
Q ss_pred CcEEeccCCCCccccccCCCCCcCCCCccccccccc
Q 002320 568 GNLLPCDGCPRAFHKECASLSSIPQGDWYCKYCQNM 603 (936)
Q Consensus 568 G~Ll~CD~Cp~afH~~CL~L~~vP~g~W~Cp~C~~~ 603 (936)
.+|++|..|...=+..|+.. --..||||.|...
T Consensus 3 ~~L~fC~~C~~irc~~c~~~---Ei~~~yCp~CL~~ 35 (483)
T PF05502_consen 3 EELYFCEHCHKIRCPRCVSE---EIDSYYCPNCLFE 35 (483)
T ss_pred ccceecccccccCChhhccc---ccceeECcccccc
Confidence 36888888877766777742 2237999999854
No 172
>PLN02189 cellulose synthase
Probab=33.30 E-value=30 Score=44.97 Aligned_cols=57 Identities=23% Similarity=0.614 Sum_probs=44.7
Q ss_pred CCccccccccccCCcCcccccCCCCcEEeccCCCCccccccCCCCCcCCCCcccccccccccc
Q 002320 544 GLGIICHCCNSEVSPSQFEAHADGGNLLPCDGCPRAFHKECASLSSIPQGDWYCKYCQNMFER 606 (936)
Q Consensus 544 ~~~i~C~~C~~evSpS~FE~hadgG~Ll~CD~Cp~afH~~CL~L~~vP~g~W~Cp~C~~~~~~ 606 (936)
-++.+|.+|+.++... ++|.-.+-|..|.-...-.|+.- +..+|.-.||.|+..+.+
T Consensus 32 ~~~~~C~iCgd~vg~~-----~~g~~fvaC~~C~fpvCr~Cyey-er~eg~q~CpqCkt~Y~r 88 (1040)
T PLN02189 32 LDGQVCEICGDEIGLT-----VDGDLFVACNECGFPVCRPCYEY-ERREGTQNCPQCKTRYKR 88 (1040)
T ss_pred ccCccccccccccCcC-----CCCCEEEeeccCCCccccchhhh-hhhcCCccCcccCCchhh
Confidence 4677999999876543 36777799999988888888853 567788999999987653
No 173
>PF04958 AstA: Arginine N-succinyltransferase beta subunit; InterPro: IPR007041 Arginine N-succinyltransferase catalyses the transfer of succinyl-CoA to arginine to produce succinylarginine. This is the first step in arginine catabolism via the arginine succinyltransferase pathway. Six major L-arginine-degrading pathways have been described for prokaryotes []. Many bacteria arginine succinyltransferase 2.3.1.109 from EC, which is the AstA protein of the succinyltransferase (ast) pathway operon consists of five genes. In a few species, such as Pseudomonas aeruginosa, a tandem gene pair encodes alpha and beta subunits of a heterodimer that is designated arginine and ornithine succinyltransferase (AOST). This entry represents the family of proteins that make up the beta subunit of the heterodimer of Ast and AOST.; GO: 0008791 arginine N-succinyltransferase activity, 0006527 arginine catabolic process; PDB: 1YLE_A.
Probab=33.14 E-value=62 Score=37.44 Aligned_cols=77 Identities=22% Similarity=0.187 Sum_probs=47.2
Q ss_pred hhhHHHHHHHHHHHhhcC-CCcccCCcCCCcchhhhccCCCCcccCCcEEEEEEe--CCeEEEEEEEEEe-c--------
Q 002320 758 PETRLLLSQAVAIFHDCF-DPIVDSISGRDLIPSMVYGNLRGQEFGGMYCAILTV--NSSVVSAGILRVF-G-------- 825 (936)
Q Consensus 758 ~e~~~~La~Al~If~EcF-dPiid~rSgrDLIp~MVy~~~~r~df~GfY~~VL~~--~~~vVsaA~lri~-g-------- 825 (936)
+.+...|..-++.-.+.| ...++. --.-.|.+||+. .|+|||++.|..- |
T Consensus 30 P~d~~~L~~rI~~S~~sFa~~~~~~------------------~~~~~YlfVLED~~tg~vvGts~I~a~vG~~~PfY~y 91 (342)
T PF04958_consen 30 PPDREALAERIERSERSFAGRDVDF------------------PGDEGYLFVLEDTETGEVVGTSAIEAAVGLDEPFYSY 91 (342)
T ss_dssp -S-HHHHHHHHHHHHHHHH-TT----------------------S--EEEEEEEETTT--EEEEEEEESSTTSSS---EE
T ss_pred CCCHHHHHHHHHHHHHHhhccccCC------------------CCccceEEEEEecCCCcEEEEEeEEeccCCCCCcEEE
Confidence 456667777666666777 222110 012258899995 5899999854321 1
Q ss_pred ---------------------------cceeEeeeeeeccCCcCCChhHHHHHH
Q 002320 826 ---------------------------QEVAELPLVATSKINHGKGYFQLLFAC 852 (936)
Q Consensus 826 ---------------------------~~~AEIp~vAT~~~~RgqG~gr~L~~~ 852 (936)
++..||--+=.+|+||+-|.|+.|..+
T Consensus 92 r~~~~vh~S~~L~v~~~~~~L~L~~d~tG~sEl~tLfL~p~~R~~~~G~lLSr~ 145 (342)
T PF04958_consen 92 RVSTLVHASRELGVRNRHETLTLSNDYTGCSELCTLFLDPDYRGGGNGRLLSRS 145 (342)
T ss_dssp EEEEEEEEETTTTEEEEEEEEEEE-TTTTSEEEEEEEE-GGGTTSHHHHHHHHH
T ss_pred EcCceeEcCcccCCccceeeEeeecCCCCCeeeEEEEECHHHcCCchHHHHHHH
Confidence 567888888999999999999888654
No 174
>KOG2779 consensus N-myristoyl transferase [Lipid transport and metabolism]
Probab=32.33 E-value=1.5e+02 Score=34.56 Aligned_cols=133 Identities=17% Similarity=0.319 Sum_probs=89.8
Q ss_pred CceEEEccCCCCChhhHHHHHHHHHHHhhcCCCcccCCcCCCcchhhhcc-C-----CCCcccCCcEEEEEEeC--CeEE
Q 002320 745 DVRWRLLSGKAATPETRLLLSQAVAIFHDCFDPIVDSISGRDLIPSMVYG-N-----LRGQEFGGMYCAILTVN--SSVV 816 (936)
Q Consensus 745 di~W~lLsgk~~s~e~~~~La~Al~If~EcFdPiid~rSgrDLIp~MVy~-~-----~~r~df~GfY~~VL~~~--~~vV 816 (936)
.+.|..+. -.+...|.+-.+.+.|.+ +-|. |..-..-|+ + +..-.+.--|.+.+.+. +++|
T Consensus 80 gf~W~tld-----v~~~~~l~el~~lL~eny--VEd~----~~m~rf~Ys~eFl~Wal~~pg~~~~WHiGVRv~~s~kLV 148 (421)
T KOG2779|consen 80 GFRWETLD-----VSDFKDLEELYNLLNENY--VEDD----DSMFRFDYSPEFLKWALQPPGWKKEWHIGVRVKSSKKLV 148 (421)
T ss_pred CceeeccC-----CccHhHHHHHHhhcccCC--CCcc----ccchhhhccHHHHHhhhcCCCCccceEEEEEEecCCceE
Confidence 57787653 234456777777778776 2222 222223344 2 33444555677777755 4676
Q ss_pred EE-----EEEEEecc--ceeEeeeeeeccCCcCCChhHHHHHHHHHHhhhcCce------EEEecchhhHHHHhHhcc--
Q 002320 817 SA-----GILRVFGQ--EVAELPLVATSKINHGKGYFQLLFACIEKLLSFLRVK------SIVLPAAEEAESIWTDKF-- 881 (936)
Q Consensus 817 sa-----A~lri~g~--~~AEIp~vAT~~~~RgqG~gr~L~~~IE~~L~~lgV~------~LvlpA~~ea~~~w~~kf-- 881 (936)
+- ++|||.+. ..+||-++.+++..|++++.=.|+.+|-+...-.||- -++||+-...-.-|-+.+
T Consensus 149 aFIsaiP~~irvrdk~vk~veINFLCVHKkLRSKRlaPvLIrEITRRvnl~gIfqA~yTaGvvLp~PVstcRY~HRsLNp 228 (421)
T KOG2779|consen 149 AFISAIPATIRVRDKVVKMVEINFLCVHKKLRSKRLAPVLIREITRRVNLEGIFQAAYTAGVVLPKPVSTCRYWHRSLNP 228 (421)
T ss_pred EEEeccccEEEEccceeeeeeEEEEEEehhhhccccccHHHHHHHHHhhhhhhhhHhhhcceeeccccchhhhhhccCCh
Confidence 63 47888885 6899999999999999999999999998876666553 467887776667777643
Q ss_pred ------CcEEcCH
Q 002320 882 ------GFKKIDP 888 (936)
Q Consensus 882 ------GF~~i~~ 888 (936)
||+.++.
T Consensus 229 kKL~dv~Fs~l~~ 241 (421)
T KOG2779|consen 229 KKLIDVGFSHLSR 241 (421)
T ss_pred hHeeEeccccccc
Confidence 7776555
No 175
>PLN03238 probable histone acetyltransferase MYST; Provisional
Probab=32.27 E-value=89 Score=35.37 Aligned_cols=31 Identities=23% Similarity=0.159 Sum_probs=25.1
Q ss_pred eeeeeeccCCcCCChhHHHHHHHHHHhhhcC
Q 002320 831 LPLVATSKINHGKGYFQLLFACIEKLLSFLR 861 (936)
Q Consensus 831 Ip~vAT~~~~RgqG~gr~L~~~IE~~L~~lg 861 (936)
+--|-|.|.||++|||+.|++.-=.+.+..|
T Consensus 158 LaCIltLPpyQrkGyG~~LI~fSYeLSr~Eg 188 (290)
T PLN03238 158 LACILTLPPYQRKGYGKFLISFAYELSKREG 188 (290)
T ss_pred EEEEEecChhhhccHhHhHHHHHhHHhhccC
Confidence 6677899999999999999987666655554
No 176
>PRK01305 arginyl-tRNA-protein transferase; Provisional
Probab=32.22 E-value=2.2e+02 Score=31.55 Aligned_cols=59 Identities=7% Similarity=0.027 Sum_probs=48.1
Q ss_pred EEEEeCCeEEEEEEEEEeccceeEeeeeeeccCCcCCChhHHHHHHHHHHhhhcCceEEE
Q 002320 807 AILTVNSSVVSAGILRVFGQEVAELPLVATSKINHGKGYFQLLFACIEKLLSFLRVKSIV 866 (936)
Q Consensus 807 ~VL~~~~~vVsaA~lri~g~~~AEIp~vAT~~~~RgqG~gr~L~~~IE~~L~~lgV~~Lv 866 (936)
+-...+|++|++|.+.+....+.-|-.+ =+|++-..++|...+..-.+.++.+|.+.+.
T Consensus 147 ~ey~~~g~LiaVav~D~l~d~lSAVY~F-yDPd~~~~SLG~~~iL~qI~~ak~~gl~y~Y 205 (240)
T PRK01305 147 IEFRGDGKLVAVAVTDVLDDGLSAVYTF-YDPDEEHRSLGTFAILWQIELAKRLGLPYVY 205 (240)
T ss_pred EEEEeCCeEEEEEEEeccCCceeeEEEe-eCCCccccCCHHHHHHHHHHHHHHcCCCeEe
Confidence 3445789999999999988877776433 4788888888888888888889999999988
No 177
>TIGR03244 arg_catab_AstA arginine N-succinyltransferase. In many bacteria, the arginine succinyltransferase (ast) pathway operon consists of five genes, including this protein, arginine N-succinyltransferase (EC 2.3.1.109). In a few species, such as Pseudomonas aeruginosa, the member of this family is encoded adjacent to a paralog, and the two polypeptides form a heterodimeric enzyme, active on both arginine and ornithine. In such species, this polypeptide may be treated as the beta subunit of an enzyme that may be named either arginine N-succinyltransferase (AST) or arginine and orthithine N-succinyltransferase (AOST).
Probab=30.59 E-value=90 Score=36.08 Aligned_cols=50 Identities=18% Similarity=0.117 Sum_probs=38.3
Q ss_pred CcEEEEEEe--CCeEEEEEEEEEe-c-----------------------------------cceeEeeeeeeccCCcCCC
Q 002320 803 GMYCAILTV--NSSVVSAGILRVF-G-----------------------------------QEVAELPLVATSKINHGKG 844 (936)
Q Consensus 803 GfY~~VL~~--~~~vVsaA~lri~-g-----------------------------------~~~AEIp~vAT~~~~RgqG 844 (936)
.-|.+||+. .|+|||++.|... | ++..||--+-.+++||+-|
T Consensus 54 ~~YlFVLEDt~tg~vvGts~I~a~vG~~~PfY~yr~~~~vhaS~~L~v~~~~~~L~l~nd~tG~SElctLfL~p~~R~~~ 133 (336)
T TIGR03244 54 QGYLFVLEDTETGTVAGVSAIEAAVGLEEPFYNYRVGTVVHASKELGIYKALETLFLSNDLTGYSELCTLFLDPDYRKGG 133 (336)
T ss_pred ccEEEEEEeCCCCeEEEEEeEEecccCCCCCEEEEcCceeecCcccCCceeeeeEEeeccCCCCeeeEEEEECHHHcCCc
Confidence 367788885 5899998865431 1 5678888888999999999
Q ss_pred hhHHHHHH
Q 002320 845 YFQLLFAC 852 (936)
Q Consensus 845 ~gr~L~~~ 852 (936)
.|+.|-.+
T Consensus 134 ~G~LLSr~ 141 (336)
T TIGR03244 134 NGRLLSKS 141 (336)
T ss_pred chhhHHHH
Confidence 99877653
No 178
>TIGR03245 arg_AOST_alph arginine/ornithine succinyltransferase, alpha subunit. In some bacteria, including Pseudomonas aeruginosa, the astB gene (arginine N-succinyltransferase) is replaced by tandem paralogs that form a heterodimer. This heterodimer from P. aeruginosa is characterized as arginine and ornithine N-2 succinyltransferase (AOST). Members of this protein family represent the less widespread paralog, designated AruI, or arginine/ornithine succinyltransferase, alpha subunit.
Probab=30.23 E-value=86 Score=36.23 Aligned_cols=50 Identities=12% Similarity=0.024 Sum_probs=38.3
Q ss_pred CcEEEEEEe--CCeEEEEEEEEEe-c-----------------------------------cceeEeeeeeeccCCcCCC
Q 002320 803 GMYCAILTV--NSSVVSAGILRVF-G-----------------------------------QEVAELPLVATSKINHGKG 844 (936)
Q Consensus 803 GfY~~VL~~--~~~vVsaA~lri~-g-----------------------------------~~~AEIp~vAT~~~~RgqG 844 (936)
..|.+||+. .|+|||++.|... | ++..||--+-.+|+||+-|
T Consensus 55 ~~YlFVLEDt~tg~vvGts~I~a~vG~~~PfY~yr~~~~vhaS~~L~v~~~~~~L~l~nd~tG~sElctLfL~p~~R~~~ 134 (336)
T TIGR03245 55 ERYLFVLEDTETGKLLGTSSIVASAGYGEPFYSYRNDTLIHASRELKVNNKIHVLYMCHELTGSSLLCSFYVDPRLRKTE 134 (336)
T ss_pred ccEEEEEEeCCCCcEEEEEeEEecccCCCCCEEEEcCceeecCcccCCccceeeEEeeccCCCCeeeEEEEECHHHcCCC
Confidence 367788884 5899998865431 1 5678888888999999999
Q ss_pred hhHHHHHH
Q 002320 845 YFQLLFAC 852 (936)
Q Consensus 845 ~gr~L~~~ 852 (936)
.|+.|-.+
T Consensus 135 ~G~lLSr~ 142 (336)
T TIGR03245 135 AAELLSRA 142 (336)
T ss_pred chhHHHHH
Confidence 99877553
No 179
>TIGR03243 arg_catab_AOST arginine and ornithine succinyltransferase subunits. In many bacteria, the sole member of this protein family is arginine N-succinyltransferase (EC 2.3.1.109), the AstA protein of the arginine succinyltransferase (ast) pathway. However, in Pseudomonas aeruginosa and several other species, a tandem gene pair encodes alpha and beta subunits of a heterodimer that is designated arginine and ornithine succinyltransferase (AOST).
Probab=29.80 E-value=90 Score=36.06 Aligned_cols=50 Identities=18% Similarity=0.118 Sum_probs=38.4
Q ss_pred CcEEEEEEe--CCeEEEEEEEEEe-c-----------------------------------cceeEeeeeeeccCCcCCC
Q 002320 803 GMYCAILTV--NSSVVSAGILRVF-G-----------------------------------QEVAELPLVATSKINHGKG 844 (936)
Q Consensus 803 GfY~~VL~~--~~~vVsaA~lri~-g-----------------------------------~~~AEIp~vAT~~~~RgqG 844 (936)
..|.+||+. .|+|||++.|... | ++..||--+-.+|+||+-|
T Consensus 54 ~~YlFVLED~~tg~vvGts~I~a~vG~~~PfY~yrv~~~vhaS~~L~v~~~~~~L~l~nd~tG~sElctLfL~p~~R~~~ 133 (335)
T TIGR03243 54 EGYLFVLEDTETGTVAGVSAIEAAVGLDEPFYNYRVGTLVHASRELGVYNKIPTLTLSNDLTGSSELCTLFLDPDYRKGG 133 (335)
T ss_pred ccEEEEEEeCCCCeEEEEEeEEecccCCCCCEEEEcCceeecCcccCCccceeeEEeeccCCCCeeeEEEEECHHHcCCC
Confidence 367788884 5899998865431 1 5678888888999999999
Q ss_pred hhHHHHHH
Q 002320 845 YFQLLFAC 852 (936)
Q Consensus 845 ~gr~L~~~ 852 (936)
.|+.|-.+
T Consensus 134 ~G~LLSr~ 141 (335)
T TIGR03243 134 NGRLLSRS 141 (335)
T ss_pred chhhHHHH
Confidence 99877653
No 180
>PRK10456 arginine succinyltransferase; Provisional
Probab=29.05 E-value=89 Score=36.22 Aligned_cols=50 Identities=20% Similarity=0.107 Sum_probs=38.2
Q ss_pred CcEEEEEEe--CCeEEEEEEEEEe-c-----------------------------------cceeEeeeeeeccCCcCCC
Q 002320 803 GMYCAILTV--NSSVVSAGILRVF-G-----------------------------------QEVAELPLVATSKINHGKG 844 (936)
Q Consensus 803 GfY~~VL~~--~~~vVsaA~lri~-g-----------------------------------~~~AEIp~vAT~~~~RgqG 844 (936)
..|.+||+. .|+|||++.|... | ++..||--+-.+++||+-|
T Consensus 56 ~~YlFVLED~~tg~vvGts~I~a~vG~~~PfY~yr~~~~vhaS~~L~v~~~~~~L~l~nd~tG~sElctLfl~p~~R~~~ 135 (344)
T PRK10456 56 QGYVFVLEDSETGTVAGICAIEVAVGLNDPWYNYRVGTLVHASKELNVYNALPTLFLSNDHTGSSELCTLFLDPDWRKEG 135 (344)
T ss_pred ccEEEEEEeCCCCcEEEEEeEEecccCCCCCEEEEcCceeecCcccCCceeeeeEEeeccCCCCceeEEEEECHHHcCCC
Confidence 367788884 5899998865431 1 5678888888999999999
Q ss_pred hhHHHHHH
Q 002320 845 YFQLLFAC 852 (936)
Q Consensus 845 ~gr~L~~~ 852 (936)
.|+.|-.+
T Consensus 136 ~G~LLSr~ 143 (344)
T PRK10456 136 NGYLLSKS 143 (344)
T ss_pred chhHHHHH
Confidence 99877653
No 181
>TIGR02174 CXXU_selWTH selT/selW/selH selenoprotein domain. This model represents a domain found in both bacteria and animals, including animal proteins SelT, SelW, and SelH, all of which are selenoproteins. In a CXXC motif near the N-terminus of the domain, selenocysteine may replace the second Cys. Proteins with this domain may include an insert of about 70 amino acids. This model is broader than the current SelW model pfam05169 in Pfam.
Probab=28.87 E-value=38 Score=30.23 Aligned_cols=29 Identities=34% Similarity=0.680 Sum_probs=23.8
Q ss_pred ccceeEEeEEeeEEEEEEeccCCCCCCccc
Q 002320 40 RCKRFKVTKVNGFIVYSRVKRSRFSNSDDL 69 (936)
Q Consensus 40 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 69 (936)
+=-.|.|+ |||-+||||++..+|-..+.|
T Consensus 39 ~~G~Fev~-~~g~~v~sk~~~~~fp~~~~~ 67 (72)
T TIGR02174 39 TTGAFEVT-VNGQLVWSKLRGGGFPEPEEL 67 (72)
T ss_pred CCcEEEEE-ECCEEEEEeccCCCCCCHHHH
Confidence 44579997 799999999999998876654
No 182
>PLN00104 MYST -like histone acetyltransferase; Provisional
Probab=28.67 E-value=52 Score=39.32 Aligned_cols=30 Identities=27% Similarity=0.178 Sum_probs=22.9
Q ss_pred eeeeeeccCCcCCChhHHHHHHHHHHhhhc
Q 002320 831 LPLVATSKINHGKGYFQLLFACIEKLLSFL 860 (936)
Q Consensus 831 Ip~vAT~~~~RgqG~gr~L~~~IE~~L~~l 860 (936)
+--|-|.|.||++|||+.|++.-=.+.+..
T Consensus 309 LaCIltlP~yQrkGyG~~LI~~SYeLSr~e 338 (450)
T PLN00104 309 LACILTLPPYQRKGYGKFLIAFSYELSKRE 338 (450)
T ss_pred eEEEEecchhhhcchhheehhheehhhhcc
Confidence 667789999999999999998544444333
No 183
>PF10367 Vps39_2: Vacuolar sorting protein 39 domain 2; InterPro: IPR019453 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised In Vps39 this domain is involved in localisation and in mediating the interactions with Vps11 [].
Probab=28.41 E-value=42 Score=30.99 Aligned_cols=32 Identities=19% Similarity=0.399 Sum_probs=21.9
Q ss_pred CCccccccccccCCcCcccccCCCCcEEeccCCCCccccccC
Q 002320 544 GLGIICHCCNSEVSPSQFEAHADGGNLLPCDGCPRAFHKECA 585 (936)
Q Consensus 544 ~~~i~C~~C~~evSpS~FE~hadgG~Ll~CD~Cp~afH~~CL 585 (936)
..+..|.+|++.+..+. +.---|+..||..|+
T Consensus 76 ~~~~~C~vC~k~l~~~~----------f~~~p~~~v~H~~C~ 107 (109)
T PF10367_consen 76 TESTKCSVCGKPLGNSV----------FVVFPCGHVVHYSCI 107 (109)
T ss_pred CCCCCccCcCCcCCCce----------EEEeCCCeEEecccc
Confidence 45677999999765322 222245588999997
No 184
>KOG0827 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=28.05 E-value=13 Score=43.17 Aligned_cols=47 Identities=32% Similarity=0.625 Sum_probs=30.8
Q ss_pred cccccccccCCcCcccccCCCCcEEeccCCCCccccccCCCCCcCCCC-c--cccccccc
Q 002320 547 IICHCCNSEVSPSQFEAHADGGNLLPCDGCPRAFHKECASLSSIPQGD-W--YCKYCQNM 603 (936)
Q Consensus 547 i~C~~C~~evSpS~FE~hadgG~Ll~CD~Cp~afH~~CL~L~~vP~g~-W--~Cp~C~~~ 603 (936)
-.|.+|.. +-| ...++..=..|++.||..|| ..|-+++ | -||.|+..
T Consensus 5 A~C~Ic~d-~~p-------~~~~l~~i~~cGhifh~~cl--~qwfe~~Ps~R~cpic~ik 54 (465)
T KOG0827|consen 5 AECHICID-GRP-------NDHELGPIGTCGHIFHTTCL--TQWFEGDPSNRGCPICQIK 54 (465)
T ss_pred ceeeEecc-CCc-------cccccccccchhhHHHHHHH--HHHHccCCccCCCCceeec
Confidence 46999953 211 12345555569999999999 4565553 5 69999843
No 185
>KOG3581 consensus Creatine kinases [Energy production and conversion]
Probab=27.88 E-value=41 Score=38.08 Aligned_cols=43 Identities=33% Similarity=0.631 Sum_probs=34.9
Q ss_pred HHHHHHHhhcCCCcccCCc-C---CCcchhhhcc---CCCCcccCCcEEE
Q 002320 765 SQAVAIFHDCFDPIVDSIS-G---RDLIPSMVYG---NLRGQEFGGMYCA 807 (936)
Q Consensus 765 a~Al~If~EcFdPiid~rS-g---rDLIp~MVy~---~~~r~df~GfY~~ 807 (936)
++|-++|.+.|||||+.+- | ++..|.+-.+ .+..+|+.|.|..
T Consensus 77 ~EaY~vFadLFDpiIedyH~Gf~p~~~qp~tdlg~~~~~~~ldpd~~yi~ 126 (363)
T KOG3581|consen 77 AEAYTVFADLFDPIIEDYHGGFKPTDKQPATDLGKTKEFGGLDPDGKYIL 126 (363)
T ss_pred HHHHHHHHHHhchHHHHHhcCCCccccCCCccCCcccccCCCCCCCceeE
Confidence 5899999999999997654 3 4777777777 6889999999954
No 186
>KOG1246 consensus DNA-binding protein jumonji/RBP2/SMCY, contains JmjC domain [General function prediction only]
Probab=27.82 E-value=43 Score=43.28 Aligned_cols=50 Identities=32% Similarity=0.769 Sum_probs=38.7
Q ss_pred CCccccccccccCCcCcccccCCCCcEEeccCCCCccccccCC--CCCcCCCCccccccccc
Q 002320 544 GLGIICHCCNSEVSPSQFEAHADGGNLLPCDGCPRAFHKECAS--LSSIPQGDWYCKYCQNM 603 (936)
Q Consensus 544 ~~~i~C~~C~~evSpS~FE~hadgG~Ll~CD~Cp~afH~~CL~--L~~vP~g~W~Cp~C~~~ 603 (936)
.+...|..|.+.-. . .++.|++|...||..|.. +..+++++|.|+.|...
T Consensus 153 ~~~~~~~~~~k~~~---------~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (904)
T KOG1246|consen 153 IDYPQCNTCSKGKE---------E-KLLLCDSCDDSYHTYCLRPPLTRVPDGDWRCPKCIPT 204 (904)
T ss_pred ccchhhhccccCCC---------c-cceecccccCcccccccCCCCCcCCcCcccCCccccc
Confidence 34566888886322 1 334999999999999996 77899999999999754
No 187
>PLN02915 cellulose synthase A [UDP-forming], catalytic subunit
Probab=27.78 E-value=41 Score=43.81 Aligned_cols=56 Identities=25% Similarity=0.600 Sum_probs=44.1
Q ss_pred CccccccccccCCcCcccccCCCCcEEeccCCCCccccccCCCCCcCCCCcccccccccccc
Q 002320 545 LGIICHCCNSEVSPSQFEAHADGGNLLPCDGCPRAFHKECASLSSIPQGDWYCKYCQNMFER 606 (936)
Q Consensus 545 ~~i~C~~C~~evSpS~FE~hadgG~Ll~CD~Cp~afH~~CL~L~~vP~g~W~Cp~C~~~~~~ 606 (936)
.+.+|.+|+..+-.. ++|.-.+-|..|.-...-.|+.- +..+|.=.||.|+..+.+
T Consensus 14 ~~~~c~iCGd~vg~~-----~~Ge~FVAC~eC~fpvCr~cyey-e~~~g~~~cp~c~t~y~~ 69 (1044)
T PLN02915 14 DAKTCRVCGDEVGVK-----EDGQPFVACHVCGFPVCKPCYEY-ERSEGNQCCPQCNTRYKR 69 (1044)
T ss_pred CcchhhccccccCcC-----CCCCEEEEeccCCCccccchhhh-hhhcCCccCCccCCchhh
Confidence 678999999765433 37777799999988888888853 567788999999987653
No 188
>KOG3612 consensus PHD Zn-finger protein [General function prediction only]
Probab=27.51 E-value=40 Score=40.85 Aligned_cols=46 Identities=28% Similarity=0.427 Sum_probs=31.4
Q ss_pred CCcCcccccCCCCcEEeccCCCCccccccCCC-CCcCC--CCcccccccc
Q 002320 556 VSPSQFEAHADGGNLLPCDGCPRAFHKECASL-SSIPQ--GDWYCKYCQN 602 (936)
Q Consensus 556 vSpS~FE~hadgG~Ll~CD~Cp~afH~~CL~L-~~vP~--g~W~Cp~C~~ 602 (936)
++++.||+|.++ ..+.|+.|-+.||..|+.. ...+. ..|.|+.|..
T Consensus 59 ~d~~cfechlpg-~vl~c~vc~Rs~h~~c~sp~~q~r~~s~p~~~p~p~s 107 (588)
T KOG3612|consen 59 IDPFCFECHLPG-AVLKCIVCHRSFHENCQSPDPQKRNYSVPSDKPQPYS 107 (588)
T ss_pred CCcccccccCCc-ceeeeehhhccccccccCcchhhccccccccCCcccc
Confidence 344455555554 6677999999999999952 22332 3599998864
No 189
>KOG2747 consensus Histone acetyltransferase (MYST family) [Chromatin structure and dynamics]
Probab=27.35 E-value=52 Score=38.67 Aligned_cols=25 Identities=28% Similarity=0.258 Sum_probs=20.6
Q ss_pred eeeeeeccCCcCCChhHHHHHHHHH
Q 002320 831 LPLVATSKINHGKGYFQLLFACIEK 855 (936)
Q Consensus 831 Ip~vAT~~~~RgqG~gr~L~~~IE~ 855 (936)
+--|=|.|.||++|||+.|++.==.
T Consensus 263 laCILtLPpyQRkGYGklLIdFSYe 287 (396)
T KOG2747|consen 263 LACILTLPPYQRKGYGKLLIDFSYE 287 (396)
T ss_pred eeeeeecChhhhcccchhhhhhhhh
Confidence 6667799999999999999985433
No 190
>KOG1081 consensus Transcription factor NSD1 and related SET domain proteins [Transcription]
Probab=27.17 E-value=19 Score=43.00 Aligned_cols=65 Identities=20% Similarity=0.283 Sum_probs=41.9
Q ss_pred CccccccCCCCCCCCCCCCceeeCCCcCcccCCCccccCcCCcccCCCCCcceecCCch---------hhHHHHHhhhhc
Q 002320 647 SGCLLCRGCDFSKSGFGPRTILLCDQCEREFHVGCLKKHKMADLRELPKGKWFCCMDCS---------RINSVLQNLLVQ 717 (936)
Q Consensus 647 ~~C~iC~~~d~s~sg~~~g~LI~CDqC~rayHv~CL~p~~l~~L~evPeg~WfC~~~C~---------~I~~kLqkLl~~ 717 (936)
..|++|.+ ++.++.|+.|..++|-.|.+- ..|...|.| .+|. -+|.++....+|
T Consensus 90 ~~c~vc~~---------ggs~v~~~s~~~~~~r~c~~~-------~~~~c~~~~-~d~~~~~~~~~~~~vw~~vg~~~~~ 152 (463)
T KOG1081|consen 90 SECFVCFK---------GGSLVTCKSRIQAPHRKCKPA-------QLEKCSKRC-TDCRAFKKREVGDLVWSKVGEYPWW 152 (463)
T ss_pred chhccccC---------CCccceeccccccccccCcCc-------cCcccccCC-cceeeeccccceeEEeEEcCccccc
Confidence 46999985 568899998888888888752 446667776 4554 245555556666
Q ss_pred ccccCchhhhh
Q 002320 718 EAEKLPEFHLN 728 (936)
Q Consensus 718 ~~e~lp~sll~ 728 (936)
+.....+-++.
T Consensus 153 ~c~vc~~~~~~ 163 (463)
T KOG1081|consen 153 PCMVCHDPLLP 163 (463)
T ss_pred ccceecCcccc
Confidence 64444333333
No 191
>COG5540 RING-finger-containing ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=26.07 E-value=25 Score=39.82 Aligned_cols=50 Identities=22% Similarity=0.421 Sum_probs=34.8
Q ss_pred cCCccccccccccCCcCcccccCCCCcEEeccCCCCccccccCCCCCcCC-CCccccccccc
Q 002320 543 NGLGIICHCCNSEVSPSQFEAHADGGNLLPCDGCPRAFHKECASLSSIPQ-GDWYCKYCQNM 603 (936)
Q Consensus 543 ~~~~i~C~~C~~evSpS~FE~hadgG~Ll~CD~Cp~afH~~CL~L~~vP~-g~W~Cp~C~~~ 603 (936)
.+.|.-|.+|-..+. .++-+.---|.+.||..|++ .|-- ....||.|+..
T Consensus 320 a~~GveCaICms~fi---------K~d~~~vlPC~H~FH~~Cv~--kW~~~y~~~CPvCrt~ 370 (374)
T COG5540 320 ADKGVECAICMSNFI---------KNDRLRVLPCDHRFHVGCVD--KWLLGYSNKCPVCRTA 370 (374)
T ss_pred cCCCceEEEEhhhhc---------ccceEEEeccCceechhHHH--HHHhhhcccCCccCCC
Confidence 356788999986443 23445555688999999994 3333 46789999864
No 192
>KOG1472 consensus Histone acetyltransferase SAGA/ADA, catalytic subunit PCAF/GCN5 and related proteins [Chromatin structure and dynamics; Transcription]
Probab=26.02 E-value=18 Score=45.22 Aligned_cols=95 Identities=18% Similarity=0.112 Sum_probs=71.1
Q ss_pred CCCcccCC-cEEEEEEeCCe-EEEEEEEEEecc-ceeEeeeeeeccCCcCCChhHHHHHHHHHHhhhcC-ceEEEecchh
Q 002320 796 LRGQEFGG-MYCAILTVNSS-VVSAGILRVFGQ-EVAELPLVATSKINHGKGYFQLLFACIEKLLSFLR-VKSIVLPAAE 871 (936)
Q Consensus 796 ~~r~df~G-fY~~VL~~~~~-vVsaA~lri~g~-~~AEIp~vAT~~~~RgqG~gr~L~~~IE~~L~~lg-V~~LvlpA~~ 871 (936)
..|+.|.+ +-+..+..+++ +|+.-..|-++. +++|+.+.|+..+.|-.|+|.-||+-+-...+.-+ +..+..-|..
T Consensus 410 i~rlv~d~~h~~~~~~~d~~g~vggi~~r~f~~k~f~eivf~av~~~eqv~g~g~hlmnhlkd~~~~~~~i~~~ltyad~ 489 (720)
T KOG1472|consen 410 ISRLVFDTSHHVMARIKDNEGVVGGICFRPFPEKGFTEIVFCAVTTDEQVKGSGTHLMNHLKDYVRSSSTIDYALTYADE 489 (720)
T ss_pred HHhhccccccccceeeccccccccccccCcCcccCCcceeeccccCcccccccCcCchhhHHHHhhccchHHHHHHhhhh
Confidence 34677755 55555555554 999999998775 89999999999999999999999999988888876 5566666666
Q ss_pred hHHHHhHhccCcEEcCHHHH
Q 002320 872 EAESIWTDKFGFKKIDPELL 891 (936)
Q Consensus 872 ea~~~w~~kfGF~~i~~~~~ 891 (936)
.|..... +-||+.--+.+.
T Consensus 490 ~aigyfk-kqgfs~ei~~~~ 508 (720)
T KOG1472|consen 490 GAIGYFK-KQGFSKEIKFEK 508 (720)
T ss_pred ccccccc-Cccchhhccccc
Confidence 6655444 488876555444
No 193
>PF14545 DBB: Dof, BCAP, and BANK (DBB) motif,
Probab=25.39 E-value=2.1e+02 Score=29.37 Aligned_cols=63 Identities=19% Similarity=0.222 Sum_probs=47.3
Q ss_pred cCCcEEEEEEeCCeEEEEEEEEEeccceeEeeeeeeccCCcCCChhHHHHHHHHHHhhhcCceEEEecchhhHHHHhHhc
Q 002320 801 FGGMYCAILTVNSSVVSAGILRVFGQEVAELPLVATSKINHGKGYFQLLFACIEKLLSFLRVKSIVLPAAEEAESIWTDK 880 (936)
Q Consensus 801 f~GfY~~VL~~~~~vVsaA~lri~g~~~AEIp~vAT~~~~RgqG~gr~L~~~IE~~L~~lgV~~LvlpA~~ea~~~w~~k 880 (936)
-.|...+-++.||.+++++.+..+.+ |.+|+++|+. |+...+-+...
T Consensus 64 pag~V~v~v~~~g~~~~~~~ikyys~-----------------------~~el~~lL~~---------~~~PvefmCQa- 110 (142)
T PF14545_consen 64 PAGSVNVRVYCDGVSLGTRQIKYYSR-----------------------MRELEQLLRK---------AANPVEFMCQA- 110 (142)
T ss_pred CCceEEEEEEECCEEEEEEeEEEEec-----------------------HHHHHHHHHh---------cCChhhhhhhh-
Confidence 37788899999999999999988773 5678888776 33334445566
Q ss_pred cCcEEcCHHHHHHHHh
Q 002320 881 FGFKKIDPELLSIYRK 896 (936)
Q Consensus 881 fGF~~i~~~~~~~~~~ 896 (936)
||+.+.+.+++..+..
T Consensus 111 ~~i~p~~~E~LD~~Lt 126 (142)
T PF14545_consen 111 FGISPNDREELDNLLT 126 (142)
T ss_pred cCCCCCCHHHHHHHHH
Confidence 9998888888776643
No 194
>PRK13361 molybdenum cofactor biosynthesis protein A; Provisional
Probab=24.85 E-value=1.7e+02 Score=33.13 Aligned_cols=68 Identities=22% Similarity=0.267 Sum_probs=51.3
Q ss_pred eeeEEEeCCeEEeeCcCCCCceeeCcchhhhccccccCCcccceeccCCccHHHHHHHhhcCCc-hhHHHHHHHHhcCCC
Q 002320 254 GLRGIIRDGGILCSCSLCNGCRVIPPSKFEIHACKQYRRASQYICFENGKSLLEVLRACRSVPL-PMLKATLQSALSSLP 332 (936)
Q Consensus 254 ~l~G~i~~~GilC~C~~C~~~~v~s~s~FE~HAG~~~~~p~~~I~lenG~sL~~v~~~~~~~~l-~~l~~~i~~~~g~~~ 332 (936)
..-|.|...... +|..|| +--||+ ...+|.+ +|-++|.+|+++++. ++.. +.|.++|+.++..-|
T Consensus 242 ~~ig~I~~~s~~-fC~~Cn-r~rlt~-~G~l~~C---------l~~~~~~~l~~~l~~--~~~~~~~l~~~~~~~~~~k~ 307 (329)
T PRK13361 242 IHIGFISPHSHN-FCHECN-RVRVTA-EGQLLLC---------LGNEHASDLRSILRE--GPGDIERLKAAILAAINLKP 307 (329)
T ss_pred eEEEEEcCCCcc-ccccCC-eEEEcc-CCcEEec---------CCCCCCcchHHHHhc--CCCcHHHHHHHHHHHHHcCc
Confidence 558999987776 999998 456666 6677776 677889999988765 4455 379999999888765
Q ss_pred ccC
Q 002320 333 EEK 335 (936)
Q Consensus 333 ~~~ 335 (936)
...
T Consensus 308 ~~~ 310 (329)
T PRK13361 308 KGH 310 (329)
T ss_pred ccc
Confidence 433
No 195
>KOG1632 consensus Uncharacterized PHD Zn-finger protein [General function prediction only]
Probab=24.82 E-value=41 Score=38.88 Aligned_cols=44 Identities=20% Similarity=0.480 Sum_probs=34.2
Q ss_pred ceeeCCCcCcccCCCc--cccCcCCcccCCCCCcceecCCchhhHHHHHh
Q 002320 666 TILLCDQCEREFHVGC--LKKHKMADLRELPKGKWFCCMDCSRINSVLQN 713 (936)
Q Consensus 666 ~LI~CDqC~rayHv~C--L~p~~l~~L~evPeg~WfC~~~C~~I~~kLqk 713 (936)
.++.||.|..+||.+| ++. +-.+..+...|+| ..|......++.
T Consensus 74 ~~~~cd~C~~~~~~ec~~v~~---~~~e~p~~~~~~c-~~c~~~~~~~~~ 119 (345)
T KOG1632|consen 74 LMEQCDLCEDWYHGECWEVGT---AEKEAPKEDPKVC-DECKEAQDGMSE 119 (345)
T ss_pred hhhccccccccccccccccCc---hhhcCCccccccc-cccchhhhhhhh
Confidence 6789999999999999 654 3344455678999 999987766653
No 196
>COG3916 LasI N-acyl-L-homoserine lactone synthetase [Signal transduction mechanisms / Secondary metabolites biosynthesis, transport, and catabolism]
Probab=24.79 E-value=3.6e+02 Score=29.43 Aligned_cols=82 Identities=22% Similarity=0.157 Sum_probs=59.6
Q ss_pred cCCcEEEEEEeCCeEEEEEEEEEec---------------------cceeEeeeeeecc--CCcCCCh----hHHHHHHH
Q 002320 801 FGGMYCAILTVNSSVVSAGILRVFG---------------------QEVAELPLVATSK--INHGKGY----FQLLFACI 853 (936)
Q Consensus 801 f~GfY~~VL~~~~~vVsaA~lri~g---------------------~~~AEIp~vAT~~--~~RgqG~----gr~L~~~I 853 (936)
..-.|.+.+..+++|+|++++-... ++++|.-++|++. .-+..|= ...||..+
T Consensus 50 ~~t~Yll~~~~~g~I~G~~RlLptt~P~mL~~vF~~Ll~~~~~P~~p~vwEsSRF~vd~~~a~~~~g~~~~a~~el~~g~ 129 (209)
T COG3916 50 LDTVYLLALTSDGRIVGCVRLLPTTGPYMLTDVFPALLEGGPPPSSPGVWESSRFAVDKPSARRAAGGVSPAAYELFAGM 129 (209)
T ss_pred CCceEEEEEcCCCcEEEEEEeccCCCcchhhhhhHHHhcCCCCCCCCCeEEEeeeeeccccchhhcCCccHHHHHHHHHH
Confidence 3447866667899999999875432 4899999999987 4444442 56789999
Q ss_pred HHHhhhcCceEEEecchhhHHHHhHhccCc
Q 002320 854 EKLLSFLRVKSIVLPAAEEAESIWTDKFGF 883 (936)
Q Consensus 854 E~~L~~lgV~~LvlpA~~ea~~~w~~kfGF 883 (936)
-+.+...|+..++.=...-.+.+... .||
T Consensus 130 ie~a~~~G~~~IvtVt~~~meril~r-~Gw 158 (209)
T COG3916 130 IEYALARGITGIVTVTDTGMERILRR-AGW 158 (209)
T ss_pred HHHHHHcCCceEEEEEchHHHHHHHH-cCC
Confidence 99999999999986665544444444 454
No 197
>PF10262 Rdx: Rdx family; InterPro: IPR011893 This entry represents the Rdx family of selenoproteins, which includes mammalian selenoproteins SelW, SelV, SelT and SelH, bacterial SelW-like proteins and cysteine-containing proteins of unknown function in all three domains of life. Mammalian Rdx12 and its fish selenoprotein orthologues are also members of this family []. These proteins possess a thioredoxin-like fold and a conserved CXXC or CxxU (U is selenocysteine) motif near the N terminus, suggesting a redox function. Rdx proteins can use catalytic cysteine (or selenocysteine) to form transient mixed disulphides with substrate proteins. Selenium (Se) plays an essential role in cell survival and most of the effects of Se are probably mediated by selenoproteins. Selenoprotein W (SelW) plays an important role in protection of neurons from oxidative stress during neuronal development [], []. Selenoprotein T (SelT) is conserved from plants to humans. SelT is localized to the endoplasmic reticulum through a hydrophobic domain. The protein binds to UDP-glucose:glycoprotein glucosyltransferase (UGTR), the endoplasmic reticulum (ER)-resident protein, which is known to be involved in the quality control of protein folding [, ]. The function of SelT is unknown, although it may have a role in PACAP signaling during PC12 cell differentiation [, ]. Selenoprotein H (SelH) protects neurons against UVB-induced damage by inhibiting apoptotic cell death pathways, by preventing mitochondrial depolarization, and by promoting cell survival pathways [].; GO: 0008430 selenium binding, 0045454 cell redox homeostasis; PDB: 2OJL_B 2FA8_A 2P0G_C 2NPB_A 3DEX_C 2OKA_A 2OBK_G.
Probab=24.53 E-value=21 Score=31.90 Aligned_cols=27 Identities=37% Similarity=0.778 Sum_probs=21.0
Q ss_pred cceeEEeEEeeEEEEEEeccCCCCCCcc
Q 002320 41 CKRFKVTKVNGFIVYSRVKRSRFSNSDD 68 (936)
Q Consensus 41 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 68 (936)
=-.|.|+ |||-+|||++...+|-+.+.
T Consensus 42 ~G~FEV~-v~g~lI~SK~~~g~fP~~~~ 68 (76)
T PF10262_consen 42 TGAFEVT-VNGELIFSKLESGRFPDPDE 68 (76)
T ss_dssp TT-EEEE-ETTEEEEEHHHHTSSS-HHH
T ss_pred CCEEEEE-EccEEEEEehhcCCCCCHHH
Confidence 3469985 89999999999998887655
No 198
>KOG1829 consensus Uncharacterized conserved protein, contains C1, PH and RUN domains [Signal transduction mechanisms]
Probab=23.88 E-value=26 Score=42.95 Aligned_cols=36 Identities=17% Similarity=0.332 Sum_probs=26.6
Q ss_pred CccccccccccCCcCcccccCCCCcEEeccCCCCccccccCC
Q 002320 545 LGIICHCCNSEVSPSQFEAHADGGNLLPCDGCPRAFHKECAS 586 (936)
Q Consensus 545 ~~i~C~~C~~evSpS~FE~hadgG~Ll~CD~Cp~afH~~CL~ 586 (936)
.+-.|..|+..+.+. .-...-.|+-++.-||..|..
T Consensus 339 Q~~~CAgC~~~i~~~------~~~~~R~C~y~G~y~C~~Ch~ 374 (580)
T KOG1829|consen 339 QNFRCAGCGHTIGPD------LEQRPRLCRYLGKYFCDCCHQ 374 (580)
T ss_pred cCceecccCCCcccc------cccchhHhhhhhhhhCchhcc
Confidence 456899999876642 234667788888888888884
No 199
>PF07227 DUF1423: Protein of unknown function (DUF1423); InterPro: IPR004082 A total of 715 potential protein-coding genes have been identified in the nucleotide sequence of Arabidopsis thaliana chromosome 5, with an average gene density of 1 gene per 4001 bp []. Amongst the gene products is a well-conserved family of 130.7kDa proteins that share no sequence similarity with any other known proteins, other than in plants. The sequences are characterised by an N-terminal domain of variable length, a central cysteine-rich region and a relatively acidic C-terminal domain. The sequences may possess a PHD finger.
Probab=22.71 E-value=58 Score=38.76 Aligned_cols=43 Identities=23% Similarity=0.561 Sum_probs=31.4
Q ss_pred cccccCCCCcEEeccCCCCccccccCC---CC----------CcCCCCcccccccc
Q 002320 560 QFEAHADGGNLLPCDGCPRAFHKECAS---LS----------SIPQGDWYCKYCQN 602 (936)
Q Consensus 560 ~FE~hadgG~Ll~CD~Cp~afH~~CL~---L~----------~vP~g~W~Cp~C~~ 602 (936)
.|....++-..+-||.|.+.-|..|.= +. ...++.++|..|..
T Consensus 136 kfD~~~n~~~Wi~Cd~CgH~cH~dCALr~~~i~~G~s~~g~~g~~d~~f~C~~C~~ 191 (446)
T PF07227_consen 136 KFDDNKNTCSWIGCDVCGHWCHLDCALRHELIGTGPSVKGSIGTLDMQFHCRACGK 191 (446)
T ss_pred CcccCCCCeeEEeccCCCceehhhhhcccccccCCccCCCCCccCceEEEccCCCC
Confidence 355555788899999999999999971 10 11345699999974
No 200
>COG0143 MetG Methionyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=22.67 E-value=77 Score=38.98 Aligned_cols=30 Identities=27% Similarity=0.491 Sum_probs=21.3
Q ss_pred CccccccCCCCCCCCCCCCceeeCCCcCcccCCCcccc
Q 002320 647 SGCLLCRGCDFSKSGFGPRTILLCDQCEREFHVGCLKK 684 (936)
Q Consensus 647 ~~C~iC~~~d~s~sg~~~g~LI~CDqC~rayHv~CL~p 684 (936)
+.|..|+..+ .++ =.||.|++.|++.+|..
T Consensus 143 g~cp~cg~~~-----arG---D~Ce~Cg~~~~P~~l~~ 172 (558)
T COG0143 143 GTCPKCGGED-----ARG---DQCENCGRTLDPTELIN 172 (558)
T ss_pred ccCCCcCccc-----cCc---chhhhccCcCCchhcCC
Confidence 4588888432 112 27999999999999743
No 201
>PF03107 C1_2: C1 domain; InterPro: IPR004146 This short domain is rich in cysteines and histidines. The pattern of conservation is similar to that found in DAG_PE-bind (IPR002219 from INTERPRO), therefore we have termed this domain DC1 for divergent C1 domain. This domain probably also binds to two zinc ions. The function of proteins with this domain is uncertain, however this domain may bind to molecules such as diacylglycerol. This family are found in plant proteins.
Probab=22.32 E-value=79 Score=23.65 Aligned_cols=28 Identities=29% Similarity=0.815 Sum_probs=22.2
Q ss_pred ccccccccCCcCcccccCCCCc-EEeccCCCCccccccC
Q 002320 548 ICHCCNSEVSPSQFEAHADGGN-LLPCDGCPRAFHKECA 585 (936)
Q Consensus 548 ~C~~C~~evSpS~FE~hadgG~-Ll~CD~Cp~afH~~CL 585 (936)
.|.+|.++++ |. ...|+.|.-..|..|.
T Consensus 2 ~C~~C~~~~~----------~~~~Y~C~~c~f~lh~~Ca 30 (30)
T PF03107_consen 2 WCDVCRRKID----------GFYFYHCSECCFTLHVRCA 30 (30)
T ss_pred CCCCCCCCcC----------CCEeEEeCCCCCeEcCccC
Confidence 5889998654 34 8899999988998874
No 202
>KOG4628 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=22.23 E-value=41 Score=38.94 Aligned_cols=45 Identities=29% Similarity=0.676 Sum_probs=30.8
Q ss_pred ccccccCCCCCCCCCCCCceeeCCCcCcccCCCccccCcCCcccCCCCCcceecCCchh
Q 002320 648 GCLLCRGCDFSKSGFGPRTILLCDQCEREFHVGCLKKHKMADLRELPKGKWFCCMDCSR 706 (936)
Q Consensus 648 ~C~iC~~~d~s~sg~~~g~LI~CDqC~rayHv~CL~p~~l~~L~evPeg~WfC~~~C~~ 706 (936)
.|.||-+. +..|..+.=--|.-.||..|.++. |.. -.=|| +-|+.
T Consensus 231 ~CaIClEd------Y~~GdklRiLPC~H~FH~~CIDpW----L~~---~r~~C-PvCK~ 275 (348)
T KOG4628|consen 231 TCAICLED------YEKGDKLRILPCSHKFHVNCIDPW----LTQ---TRTFC-PVCKR 275 (348)
T ss_pred eEEEeecc------cccCCeeeEecCCCchhhccchhh----Hhh---cCccC-CCCCC
Confidence 79999874 344455444678899999999874 211 12378 78975
No 203
>KOG1081 consensus Transcription factor NSD1 and related SET domain proteins [Transcription]
Probab=22.02 E-value=57 Score=39.17 Aligned_cols=46 Identities=24% Similarity=0.533 Sum_probs=37.7
Q ss_pred CCccccccccccCCcCcccccCCCCcEEeccCCCCccccccCCCCCcCCCCcccccccc
Q 002320 544 GLGIICHCCNSEVSPSQFEAHADGGNLLPCDGCPRAFHKECASLSSIPQGDWYCKYCQN 602 (936)
Q Consensus 544 ~~~i~C~~C~~evSpS~FE~hadgG~Ll~CD~Cp~afH~~CL~L~~vP~g~W~Cp~C~~ 602 (936)
.+...|.+|. ++|.+++|+.|..++|-.|... ..|...|.|..|..
T Consensus 87 ~~~~~c~vc~------------~ggs~v~~~s~~~~~~r~c~~~-~~~~c~~~~~d~~~ 132 (463)
T KOG1081|consen 87 IEPSECFVCF------------KGGSLVTCKSRIQAPHRKCKPA-QLEKCSKRCTDCRA 132 (463)
T ss_pred CCcchhcccc------------CCCccceeccccccccccCcCc-cCcccccCCcceee
Confidence 3567899998 6999999999999999999964 56777788877763
No 204
>PF10497 zf-4CXXC_R1: Zinc-finger domain of monoamine-oxidase A repressor R1; InterPro: IPR018866 R1 is a transcription factor repressor that inhibits monoamine oxidase A gene expression. This domain is a four-CXXC zinc finger putative DNA-binding domain found at the C-terminal end of R1. The domain carries 12 cysteines of which four pairs are of the CXXC type [].
Probab=21.95 E-value=30 Score=33.40 Aligned_cols=51 Identities=25% Similarity=0.584 Sum_probs=32.2
Q ss_pred ccccccCCCCCCCCCCCCceeeC------CCc---CcccCCCccccCc-CCcccCCCCCcceecCCchh
Q 002320 648 GCLLCRGCDFSKSGFGPRTILLC------DQC---EREFHVGCLKKHK-MADLRELPKGKWFCCMDCSR 706 (936)
Q Consensus 648 ~C~iC~~~d~s~sg~~~g~LI~C------DqC---~rayHv~CL~p~~-l~~L~evPeg~WfC~~~C~~ 706 (936)
.|+.|++-. .+..+.| ..| ...|=-.||...- ....+.+...+|.| +.|..
T Consensus 9 ~CHqCrqKt-------~~~~~~C~~~~~~~~C~~~~~~fC~~CL~~ryge~~~ev~~~~~W~C-P~Crg 69 (105)
T PF10497_consen 9 TCHQCRQKT-------LDFKTICTGHWKNSSCRGCRGKFCGGCLRNRYGENVEEVLEDPNWKC-PKCRG 69 (105)
T ss_pred CchhhcCCC-------CCCceEcCCCCCCCCCccCcceehHhHHHHHHhhhHHHHhcCCceEC-CCCCC
Confidence 488898742 2334556 566 8889889986542 11222345689999 77864
No 205
>PHA02926 zinc finger-like protein; Provisional
Probab=21.87 E-value=38 Score=36.98 Aligned_cols=60 Identities=20% Similarity=0.348 Sum_probs=33.8
Q ss_pred cCCccccccccccCCcCcccccCCCCcEEeccCCCCccccccCC-CCCc---CCCCccccccccccc
Q 002320 543 NGLGIICHCCNSEVSPSQFEAHADGGNLLPCDGCPRAFHKECAS-LSSI---PQGDWYCKYCQNMFE 605 (936)
Q Consensus 543 ~~~~i~C~~C~~evSpS~FE~hadgG~Ll~CD~Cp~afH~~CL~-L~~v---P~g~W~Cp~C~~~~~ 605 (936)
...+..|++|.+.+..-.-....-.|- =+.|.+.|+..|+. +... ......||.|+..+.
T Consensus 167 ~SkE~eCgICmE~I~eK~~~~eRrFGI---L~~CnHsFCl~CIr~Wr~~r~~~~~~rsCPiCR~~f~ 230 (242)
T PHA02926 167 VSKEKECGICYEVVYSKRLENDRYFGL---LDSCNHIFCITCINIWHRTRRETGASDNCPICRTRFR 230 (242)
T ss_pred ccCCCCCccCccccccccccccccccc---cCCCCchHHHHHHHHHHHhccccCcCCcCCCCcceee
Confidence 456788999996542100000001132 34677889999984 2211 123578999997653
No 206
>KOG1829 consensus Uncharacterized conserved protein, contains C1, PH and RUN domains [Signal transduction mechanisms]
Probab=21.83 E-value=32 Score=42.23 Aligned_cols=51 Identities=33% Similarity=0.671 Sum_probs=33.0
Q ss_pred cCCccccccccccCCcCcccccCCCCcEEeccCCCCccccccCCCCCcCCCCcccccccc
Q 002320 543 NGLGIICHCCNSEVSPSQFEAHADGGNLLPCDGCPRAFHKECASLSSIPQGDWYCKYCQN 602 (936)
Q Consensus 543 ~~~~i~C~~C~~evSpS~FE~hadgG~Ll~CD~Cp~afH~~CL~L~~vP~g~W~Cp~C~~ 602 (936)
...+.+|..|....-..-|| -..-..|+.|...||..|+.-.. -.||.|..
T Consensus 508 ~~~gfiCe~Cq~~~iiyPF~----~~~~~rC~~C~avfH~~C~~r~s-----~~CPrC~R 558 (580)
T KOG1829|consen 508 TGKGFICELCQHNDIIYPFE----TRNTRRCSTCLAVFHKKCLRRKS-----PCCPRCER 558 (580)
T ss_pred ccCeeeeeeccCCCcccccc----cccceeHHHHHHHHHHHHHhccC-----CCCCchHH
Confidence 35567788885422222232 34567899999999999995321 12999964
No 207
>PLN02195 cellulose synthase A
Probab=21.80 E-value=66 Score=41.77 Aligned_cols=56 Identities=25% Similarity=0.631 Sum_probs=43.9
Q ss_pred CCccccccccccCCcCcccccCCCCcEEeccCCCCccccccCCCCCcCCCCccccccccccc
Q 002320 544 GLGIICHCCNSEVSPSQFEAHADGGNLLPCDGCPRAFHKECASLSSIPQGDWYCKYCQNMFE 605 (936)
Q Consensus 544 ~~~i~C~~C~~evSpS~FE~hadgG~Ll~CD~Cp~afH~~CL~L~~vP~g~W~Cp~C~~~~~ 605 (936)
..+.+|.+|+..+-.. ++|.-.+-|..|.-...-.|+.- +..+|.=.||.|+..+.
T Consensus 4 ~~~~~c~~cgd~~~~~-----~~g~~fvaC~eC~~pvCrpCyey-er~eg~q~CpqCkt~Yk 59 (977)
T PLN02195 4 SGAPICATCGEEVGVD-----SNGEAFVACHECSYPLCKACLEY-EIKEGRKVCLRCGGPYD 59 (977)
T ss_pred CCCccceecccccCcC-----CCCCeEEEeccCCCccccchhhh-hhhcCCccCCccCCccc
Confidence 3567999999865543 36777799999988888889853 56778899999987765
No 208
>KOG1642 consensus Ribonuclease, T2 family [RNA processing and modification]
Probab=21.69 E-value=43 Score=37.16 Aligned_cols=59 Identities=19% Similarity=0.221 Sum_probs=45.1
Q ss_pred eeeCcchhhhccccccC-Cc--ccceeccCCccHHH---HHHHhhcC---------CchhHHHHHHHHhcCCCc
Q 002320 275 RVIPPSKFEIHACKQYR-RA--SQYICFENGKSLLE---VLRACRSV---------PLPMLKATLQSALSSLPE 333 (936)
Q Consensus 275 ~v~s~s~FE~HAG~~~~-~p--~~~I~lenG~sL~~---v~~~~~~~---------~l~~l~~~i~~~~g~~~~ 333 (936)
.-+=.-+||.|.-++.- .| ++|=||+.+..|++ ++..|.++ +|+.++.||+.++|..|.
T Consensus 116 ~~fW~HEweKHGTCa~sv~~~~dq~~YF~~~L~l~~k~~l~~~L~~~gI~p~~~~y~l~~I~nAi~~~~G~~p~ 189 (263)
T KOG1642|consen 116 ESFWKHEWEKHGTCASSVFPLCDQHKYFETTLKLKQKLDLLSILKKAGIKPDDNFYSLADIKNAIKEAIGKTPG 189 (263)
T ss_pred chhhhhhhhccCchhhhhhhhhhHHHHHHHHHHHHHHHhHHHHHHHcCCCCCCCceeHHHHHHHHHHHhCCCCc
Confidence 34555688999877744 56 89999999998875 55665543 488899999999998864
No 209
>PF13901 DUF4206: Domain of unknown function (DUF4206)
Probab=21.59 E-value=70 Score=34.10 Aligned_cols=34 Identities=29% Similarity=0.709 Sum_probs=26.1
Q ss_pred cccccCCCCCCCCCCCCceeeCCCcCcccCCCccc
Q 002320 649 CLLCRGCDFSKSGFGPRTILLCDQCEREFHVGCLK 683 (936)
Q Consensus 649 C~iC~~~d~s~sg~~~g~LI~CDqC~rayHv~CL~ 683 (936)
|.+|...+ -.=.|.......|..|...||..|..
T Consensus 155 Ce~C~~~~-~IfPF~~~~~~~C~~C~~v~H~~C~~ 188 (202)
T PF13901_consen 155 CEICNSDD-IIFPFQIDTTVRCPKCKSVFHKSCFR 188 (202)
T ss_pred CccCCCCC-CCCCCCCCCeeeCCcCccccchhhcC
Confidence 78887542 12335666889999999999999996
No 210
>PTZ00064 histone acetyltransferase; Provisional
Probab=21.52 E-value=1.3e+02 Score=36.58 Aligned_cols=32 Identities=28% Similarity=0.155 Sum_probs=24.9
Q ss_pred EeeeeeeccCCcCCChhHHHHHHHHHHhhhcC
Q 002320 830 ELPLVATSKINHGKGYFQLLFACIEKLLSFLR 861 (936)
Q Consensus 830 EIp~vAT~~~~RgqG~gr~L~~~IE~~L~~lg 861 (936)
-+--|-|.|.||++|||+.|++.==.+.+..|
T Consensus 386 NLACILtLPpyQRKGYGklLIdfSYeLSrrEg 417 (552)
T PTZ00064 386 NLACILTLPCYQRKGYGKLLVDLSYKLSLKEG 417 (552)
T ss_pred ceEEEEecchhhhcchhhhhhhhhhhhhhhcC
Confidence 35667899999999999999987655554444
No 211
>PF07649 C1_3: C1-like domain; InterPro: IPR011424 This short domain is rich in cysteines and histidines. The pattern of conservation is similar to that found in IPR002219 from INTERPRO. C1 domains are protein kinase C-like zinc finger structures. Diacylglycerol (DAG) kinases (DGKs) have a two or three commonly conserved cysteine-rich C1 domains []. DGKs modulate the balance between the two signaling lipids, DAG and phosphatidic acid (PA), by phosphorylating DAG to yield PA []. The PKD (protein kinase D) family are novel DAG receptors. They have twin C1 domains, designated C1a and C1b, which bind DAG or phorbol esters. Individual C1 domains differ in ligand-binding activity and selectivity []. ; GO: 0047134 protein-disulfide reductase activity, 0055114 oxidation-reduction process; PDB: 1V5N_A.
Probab=21.13 E-value=34 Score=25.39 Aligned_cols=28 Identities=21% Similarity=0.532 Sum_probs=12.3
Q ss_pred cccccCCCCCCCCCCCCceeeCCCcCcccCCCcc
Q 002320 649 CLLCRGCDFSKSGFGPRTILLCDQCEREFHVGCL 682 (936)
Q Consensus 649 C~iC~~~d~s~sg~~~g~LI~CDqC~rayHv~CL 682 (936)
|..|++.. .++....|.+|+-..|..|.
T Consensus 3 C~~C~~~~------~~~~~Y~C~~Cdf~lH~~Ca 30 (30)
T PF07649_consen 3 CDACGKPI------DGGWFYRCSECDFDLHEECA 30 (30)
T ss_dssp -TTTS----------S--EEE-TTT-----HHHH
T ss_pred CCcCCCcC------CCCceEECccCCCccChhcC
Confidence 88898742 22478999999999998873
No 212
>PF13771 zf-HC5HC2H: PHD-like zinc-binding domain
Probab=21.08 E-value=55 Score=29.69 Aligned_cols=32 Identities=38% Similarity=0.967 Sum_probs=25.6
Q ss_pred CCccccccccccCCcCcccccCCCCcEEecc--CCCCccccccCC
Q 002320 544 GLGIICHCCNSEVSPSQFEAHADGGNLLPCD--GCPRAFHKECAS 586 (936)
Q Consensus 544 ~~~i~C~~C~~evSpS~FE~hadgG~Ll~CD--~Cp~afH~~CL~ 586 (936)
.....|..|.+ ..|-.+-|. +|...||..|.-
T Consensus 34 ~~~~~C~~C~~-----------~~Ga~i~C~~~~C~~~fH~~CA~ 67 (90)
T PF13771_consen 34 RRKLKCSICKK-----------KGGACIGCSHPGCSRSFHVPCAR 67 (90)
T ss_pred HhCCCCcCCCC-----------CCCeEEEEeCCCCCcEEChHHHc
Confidence 45678999995 347788886 699999999983
No 213
>PF08746 zf-RING-like: RING-like domain; InterPro: IPR014857 This is a zinc finger domain that is related to the C3HC4 RING finger domain (IPR001841 from INTERPRO). ; PDB: 3NW0_A 2CT0_A.
Probab=20.56 E-value=35 Score=27.77 Aligned_cols=39 Identities=26% Similarity=0.755 Sum_probs=17.7
Q ss_pred cccccccCCcCcccccCCCCcEEecc--CCCCccccccCC--CCCcCCCCcccccc
Q 002320 549 CHCCNSEVSPSQFEAHADGGNLLPCD--GCPRAFHKECAS--LSSIPQGDWYCKYC 600 (936)
Q Consensus 549 C~~C~~evSpS~FE~hadgG~Ll~CD--~Cp~afH~~CL~--L~~vP~g~W~Cp~C 600 (936)
|..|.+.++ .| +.|. .|+..+|..|+. +...... .||.|
T Consensus 1 C~~C~~iv~---------~G--~~C~~~~C~~r~H~~C~~~y~r~~~~~--~CP~C 43 (43)
T PF08746_consen 1 CEACKEIVT---------QG--QRCSNRDCNVRLHDDCFKKYFRHRSNP--KCPNC 43 (43)
T ss_dssp -TTT-SB-S---------SS--EE-SS--S--EE-HHHHHHHTTT-SS---B-TTT
T ss_pred CcccchhHe---------ee--ccCCCCccCchHHHHHHHHHHhcCCCC--CCcCC
Confidence 566775544 12 4676 699999999996 3333322 68776
No 214
>KOG0317 consensus Predicted E3 ubiquitin ligase, integral peroxisomal membrane protein [Posttranslational modification, protein turnover, chaperones]
Probab=20.05 E-value=28 Score=39.09 Aligned_cols=52 Identities=15% Similarity=0.275 Sum_probs=35.5
Q ss_pred ccCCccccccccccCCcCcccccCCCCcEEeccCCCCccccccCCCCCcCCCCccccccccccccc
Q 002320 542 KNGLGIICHCCNSEVSPSQFEAHADGGNLLPCDGCPRAFHKECASLSSIPQGDWYCKYCQNMFERK 607 (936)
Q Consensus 542 ~~~~~i~C~~C~~evSpS~FE~hadgG~Ll~CD~Cp~afH~~CL~L~~vP~g~W~Cp~C~~~~~~e 607 (936)
+....-.|..|.... .-..|.-|++.|...|+- +|-...--||-|+..+++.
T Consensus 235 i~~a~~kC~LCLe~~------------~~pSaTpCGHiFCWsCI~--~w~~ek~eCPlCR~~~~ps 286 (293)
T KOG0317|consen 235 IPEATRKCSLCLENR------------SNPSATPCGHIFCWSCIL--EWCSEKAECPLCREKFQPS 286 (293)
T ss_pred CCCCCCceEEEecCC------------CCCCcCcCcchHHHHHHH--HHHccccCCCcccccCCCc
Confidence 345567899999533 234577899999999983 3433333499999876653
Done!