BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 002323
(936 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2JGD|B Chain B, E. Coli 2-Oxoglutarate Dehydrogenase (E1o)
Length = 933
Score = 602 bits (1553), Expect = e-172, Method: Compositional matrix adjust.
Identities = 350/870 (40%), Positives = 476/870 (54%), Gaps = 92/870 (10%)
Query: 62 LTDSFLDGTSSVYLEELQRAWEADPNSVDESWDNFFRNFVGQAATSPGISGQTIQ----- 116
L S+L G + ++E+L + DP+SVD +W + F+ G QT +
Sbjct: 10 LDSSYLSGANQSWIEQLYEDFLTDPDSVDANWRSTFQQLPGTGVKPDQFHSQTREYFRRL 69
Query: 117 ------------------ESMRLLLLVRAYQVNGHMKAKLDPLGLEEREIPEDLDPALYG 158
+ +++L L+ AY+ GH A LDPLGL +++ DLDP+ +
Sbjct: 70 AKDASRYSSTISDPDTNVKQVKVLQLINAYRFRGHQHANLDPLGLWQQDKVADLDPSFHD 129
Query: 159 FTEADLDREFFIGVWRMAGFLSENRPVQTLRSILTRLEQAYCGSIGYEYMHIADRDQCNW 218
TEAD F +G + + + L +L L+Q YCG IG EYMHI ++ W
Sbjct: 130 LTEADFQETFNVGSF------ASGKETMKLGELLEALKQTYCGPIGAEYMHITSTEEKRW 183
Query: 219 LRDKIETPTPMQYNRQRREVILDRLIWSTQFENFLATKWTTAKRFGLEGGETLIPGMKEM 278
++ +IE+ +N + ++ L L + E +L K+ AKRF LEGG+ LIP +KEM
Sbjct: 184 IQQRIESGRAT-FNSEEKKRFLSELTAAEGLERYLGAKFPGAKRFSLEGGDALIPMLKEM 242
Query: 279 FDRAADLGVESIVIGMPHRGRLNVLGNVVRKPLRQIFSEFSGGTKPVDEDGLYTGTGDVK 338
A + G +V+GM HRGRLNVL NV+ K + +F EF+G K + GTGDVK
Sbjct: 243 IRHAGNSGTREVVLGMAHRGRLNVLVNVLGKKPQDLFDEFAGKHKE------HLGTGDVK 296
Query: 339 YHLGTSYDRPTRGGKRIHLSLVANPSHLEAVDPVVVGKTRAKQYYSHDVDRTKNMGVLIH 398
YH+G S D T GG +HL+L NPSHLE V PVV+G RA+ + K + + IH
Sbjct: 297 YHMGFSSDFQTDGG-LVHLALAFNPSHLEIVSPVVIGSVRARLDRLDEPSSNKVLPITIH 355
Query: 399 GDGSFAGQGVVYETLHLSALPNYTTGGTIHIVVNNQVAFTT-DPRAGRSSQYCTD----- 452
GD + GQGVV ETL++S Y GGT+ IV+NNQV FTT +P RS+ YCTD
Sbjct: 356 GDAAVTGQGVVQETLNMSKARGYEVGGTVRIVINNQVGFTTSNPLDARSTPYCTDIGKMV 415
Query: 453 -------------AVVHVCELAAEWRQKFHSDVVVDLVCYRRFGHNEIDEPSFTQPKMYQ 499
AV V LA ++R F DV +DLVCYRR GHNE DEPS TQP MYQ
Sbjct: 416 QAPIFHVNADDPEAVAFVTRLALDFRNTFKRDVFIDLVCYRRHGHNEADEPSATQPLMYQ 475
Query: 500 VIRSHPSAFEIYQKKLLESAQVTQEDINRIQEKVNTILNEEFMASKDYVPKRRDWLSAYW 559
I+ HP+ +IY KL + T ED + L+ ++ P + S W
Sbjct: 476 KIKKHPTPRKIYADKLEQEKVATLEDATEMVNLYRDALDAGDCVVAEWRPM--NMHSFTW 533
Query: 560 AGFKSPEQVSRIRNTGVKPEILKNVGKAITNLPENFKPHRGVKKVYEQRAQMIETGEGID 619
+ + + E N V+ + L+ + K I+ +PE + V K+Y R M + D
Sbjct: 534 SPYLNHEWDEEYPNK-VEMKRLQELAKRISTVPEAVEMQSRVAKIYADRQAMAAGEKLFD 592
Query: 620 WAVGEALAFATLLVEGNHVRLSGQDVERGTFSHRHSVLHDQETGEKYCPLDHVMMNQDEE 679
W E LA+ATL+ EG VRLSG+D RGTF HRH+V+H+Q G Y PL H+ Q
Sbjct: 593 WGGAENLAYATLVDEGIPVRLSGEDSGRGTFFHRHAVIHNQSNGSTYTPLQHIHNGQG-- 650
Query: 680 MFTVSNSSLSEFGVLGFELGYSMENPNSLVLWEAQFGDFANGAQVIFDQFLSSGESKWLR 739
F V +S LSE VL FE GY+ P +L +WEAQFGDFANGAQV+ DQF+SSGE KW R
Sbjct: 651 AFRVWDSVLSEEAVLAFEYGYATAEPRTLTIWEAQFGDFANGAQVVIDQFISSGEQKWGR 710
Query: 740 QTGLVVLLPHGYDGQGPEHSSARLERFLQMSDDNPFVIPEMDPTLRKQIQECNWQIVNVT 799
GLV+LLPHGY+GQGPEHSSARLER+LQ+ E N Q+ +
Sbjct: 711 MCGLVMLLPHGYEGQGPEHSSARLERYLQL------------------CAEQNMQVCVPS 752
Query: 800 TPANYFHVLRRQIHRGFRKPLIVISPKNLLRHKDCKSNLSEFDDVQGHPGFDKQGTRFKR 859
TPA +H+LRRQ RG R+PL+V+SPK+LLRH S+L E + P +
Sbjct: 753 TPAQVYHMLRRQALRGMRRPLVVMSPKSLLRHPLAVSSLEELANGTFLPAIGE------- 805
Query: 860 LIKDQNGHSDLEEGIRRLVLCSGKVFITSL 889
I + + +G++R+V+CSGKV+ L
Sbjct: 806 -IDELD-----PKGVKRVVMCSGKVYYDLL 829
>pdb|2JGD|A Chain A, E. Coli 2-Oxoglutarate Dehydrogenase (E1o)
Length = 933
Score = 602 bits (1552), Expect = e-172, Method: Compositional matrix adjust.
Identities = 350/870 (40%), Positives = 476/870 (54%), Gaps = 92/870 (10%)
Query: 62 LTDSFLDGTSSVYLEELQRAWEADPNSVDESWDNFFRNFVGQAATSPGISGQTIQ----- 116
L S+L G + ++E+L + DP+SVD +W + F+ G QT +
Sbjct: 10 LDSSYLSGANQSWIEQLYEDFLTDPDSVDANWRSTFQQLPGTGVKPDQFHSQTREYFRRL 69
Query: 117 ------------------ESMRLLLLVRAYQVNGHMKAKLDPLGLEEREIPEDLDPALYG 158
+ +++L L+ AY+ GH A LDPLGL +++ DLDP+ +
Sbjct: 70 AKDASRYSSTISDPDTNVKQVKVLQLINAYRFRGHQHANLDPLGLWQQDKVADLDPSFHD 129
Query: 159 FTEADLDREFFIGVWRMAGFLSENRPVQTLRSILTRLEQAYCGSIGYEYMHIADRDQCNW 218
TEAD F +G + + + L +L L+Q YCG IG EYMHI ++ W
Sbjct: 130 LTEADFQETFNVGSF------ASGKETMKLGELLEALKQTYCGPIGAEYMHITSTEEKRW 183
Query: 219 LRDKIETPTPMQYNRQRREVILDRLIWSTQFENFLATKWTTAKRFGLEGGETLIPGMKEM 278
++ +IE+ +N + ++ L L + E +L K+ AKRF LEGG+ LIP +KEM
Sbjct: 184 IQQRIESGRAT-FNSEEKKRFLSELTAAEGLERYLGAKFPGAKRFSLEGGDALIPMLKEM 242
Query: 279 FDRAADLGVESIVIGMPHRGRLNVLGNVVRKPLRQIFSEFSGGTKPVDEDGLYTGTGDVK 338
A + G +V+GM HRGRLNVL NV+ K + +F EF+G K + GTGDVK
Sbjct: 243 IRHAGNSGTREVVLGMAHRGRLNVLVNVLGKKPQDLFDEFAGKHKE------HLGTGDVK 296
Query: 339 YHLGTSYDRPTRGGKRIHLSLVANPSHLEAVDPVVVGKTRAKQYYSHDVDRTKNMGVLIH 398
YH+G S D T GG +HL+L NPSHLE V PVV+G RA+ + K + + IH
Sbjct: 297 YHMGFSSDFQTDGG-LVHLALAFNPSHLEIVSPVVIGSVRARLDRLDEPSSNKVLPITIH 355
Query: 399 GDGSFAGQGVVYETLHLSALPNYTTGGTIHIVVNNQVAFTT-DPRAGRSSQYCTD----- 452
GD + GQGVV ETL++S Y GGT+ IV+NNQV FTT +P RS+ YCTD
Sbjct: 356 GDAAVTGQGVVQETLNMSKARGYEVGGTVRIVINNQVGFTTSNPLDARSTPYCTDIGKMV 415
Query: 453 -------------AVVHVCELAAEWRQKFHSDVVVDLVCYRRFGHNEIDEPSFTQPKMYQ 499
AV V LA ++R F DV +DLVCYRR GHNE DEPS TQP MYQ
Sbjct: 416 QAPIFHVNADDPEAVAFVTRLALDFRNTFKRDVFIDLVCYRRHGHNEADEPSATQPLMYQ 475
Query: 500 VIRSHPSAFEIYQKKLLESAQVTQEDINRIQEKVNTILNEEFMASKDYVPKRRDWLSAYW 559
I+ HP+ +IY KL + T ED + L+ ++ P + S W
Sbjct: 476 KIKKHPTPRKIYADKLEQEKVATLEDATEMVNLYRDALDAGDCVVAEWRPM--NMHSFTW 533
Query: 560 AGFKSPEQVSRIRNTGVKPEILKNVGKAITNLPENFKPHRGVKKVYEQRAQMIETGEGID 619
+ + + E N V+ + L+ + K I+ +PE + V K+Y R M + D
Sbjct: 534 SPYLNHEWDEEYPNK-VEMKRLQELAKRISTVPEAVEMQSRVAKIYGDRQAMAAGEKLFD 592
Query: 620 WAVGEALAFATLLVEGNHVRLSGQDVERGTFSHRHSVLHDQETGEKYCPLDHVMMNQDEE 679
W E LA+ATL+ EG VRLSG+D RGTF HRH+V+H+Q G Y PL H+ Q
Sbjct: 593 WGGAENLAYATLVDEGIPVRLSGEDSGRGTFFHRHAVIHNQSNGSTYTPLQHIHNGQG-- 650
Query: 680 MFTVSNSSLSEFGVLGFELGYSMENPNSLVLWEAQFGDFANGAQVIFDQFLSSGESKWLR 739
F V +S LSE VL FE GY+ P +L +WEAQFGDFANGAQV+ DQF+SSGE KW R
Sbjct: 651 AFRVWDSVLSEEAVLAFEYGYATAEPRTLTIWEAQFGDFANGAQVVIDQFISSGEQKWGR 710
Query: 740 QTGLVVLLPHGYDGQGPEHSSARLERFLQMSDDNPFVIPEMDPTLRKQIQECNWQIVNVT 799
GLV+LLPHGY+GQGPEHSSARLER+LQ+ E N Q+ +
Sbjct: 711 MCGLVMLLPHGYEGQGPEHSSARLERYLQL------------------CAEQNMQVCVPS 752
Query: 800 TPANYFHVLRRQIHRGFRKPLIVISPKNLLRHKDCKSNLSEFDDVQGHPGFDKQGTRFKR 859
TPA +H+LRRQ RG R+PL+V+SPK+LLRH S+L E + P +
Sbjct: 753 TPAQVYHMLRRQALRGMRRPLVVMSPKSLLRHPLAVSSLEELANGTFLPAIGE------- 805
Query: 860 LIKDQNGHSDLEEGIRRLVLCSGKVFITSL 889
I + + +G++R+V+CSGKV+ L
Sbjct: 806 -IDELD-----PKGVKRVVMCSGKVYYDLL 829
>pdb|2XTA|A Chain A, Crystal Structure Of The Suca Domain Of Mycobacterium
Smegmatis Alpha-Ketoglutarate Decarboxylase In Complex
With Acetyl-Coa (Triclinic Form)
pdb|2XTA|B Chain B, Crystal Structure Of The Suca Domain Of Mycobacterium
Smegmatis Alpha-Ketoglutarate Decarboxylase In Complex
With Acetyl-Coa (Triclinic Form)
pdb|2XTA|C Chain C, Crystal Structure Of The Suca Domain Of Mycobacterium
Smegmatis Alpha-Ketoglutarate Decarboxylase In Complex
With Acetyl-Coa (Triclinic Form)
pdb|2XTA|D Chain D, Crystal Structure Of The Suca Domain Of Mycobacterium
Smegmatis Alpha-Ketoglutarate Decarboxylase In Complex
With Acetyl-Coa (Triclinic Form)
pdb|2Y0P|A Chain A, Crystal Structure Of The Suca Domain Of Mycobacterium
Smegmatis Alpha-Ketoglutarate Decarboxylase In Complex
With The Enamine-Thdp Intermediate And Acetyl-Coa
pdb|2Y0P|B Chain B, Crystal Structure Of The Suca Domain Of Mycobacterium
Smegmatis Alpha-Ketoglutarate Decarboxylase In Complex
With The Enamine-Thdp Intermediate And Acetyl-Coa
pdb|2Y0P|C Chain C, Crystal Structure Of The Suca Domain Of Mycobacterium
Smegmatis Alpha-Ketoglutarate Decarboxylase In Complex
With The Enamine-Thdp Intermediate And Acetyl-Coa
pdb|2Y0P|D Chain D, Crystal Structure Of The Suca Domain Of Mycobacterium
Smegmatis Alpha-Ketoglutarate Decarboxylase In Complex
With The Enamine-Thdp Intermediate And Acetyl-Coa
pdb|2YIC|A Chain A, Crystal Structure Of The Suca Domain Of Mycobacterium
Smegmatis Alpha-Ketoglutarate Decarboxylase (Triclinic
Form)
pdb|2YIC|B Chain B, Crystal Structure Of The Suca Domain Of Mycobacterium
Smegmatis Alpha-Ketoglutarate Decarboxylase (Triclinic
Form)
pdb|2YIC|C Chain C, Crystal Structure Of The Suca Domain Of Mycobacterium
Smegmatis Alpha-Ketoglutarate Decarboxylase (Triclinic
Form)
pdb|2YIC|D Chain D, Crystal Structure Of The Suca Domain Of Mycobacterium
Smegmatis Alpha-Ketoglutarate Decarboxylase (Triclinic
Form)
pdb|2YID|A Chain A, Crystal Structure Of The Suca Domain Of Mycobacterium
Smegmatis Alpha-Ketoglutarate Decarboxylase In Complex
With The Enamine-Thdp Intermediate
pdb|2YID|B Chain B, Crystal Structure Of The Suca Domain Of Mycobacterium
Smegmatis Alpha-Ketoglutarate Decarboxylase In Complex
With The Enamine-Thdp Intermediate
pdb|2YID|C Chain C, Crystal Structure Of The Suca Domain Of Mycobacterium
Smegmatis Alpha-Ketoglutarate Decarboxylase In Complex
With The Enamine-Thdp Intermediate
pdb|2YID|D Chain D, Crystal Structure Of The Suca Domain Of Mycobacterium
Smegmatis Alpha-Ketoglutarate Decarboxylase In Complex
With The Enamine-Thdp Intermediate
pdb|2XT9|A Chain A, Crystal Structure Of Mycobacterium Smegmatis Alpha-
Ketoglutarate Decarboxylase In Complex With Gara
Length = 868
Score = 580 bits (1496), Expect = e-166, Method: Compositional matrix adjust.
Identities = 340/817 (41%), Positives = 477/817 (58%), Gaps = 99/817 (12%)
Query: 112 GQTIQE-SMRLLLLVRAYQVNGHMKAKLDPLGLEE---REIPEDLDPALYGFTEADLDRE 167
G +I++ + R++ L+ AY+ GH+ A +DPL L+ R P DLD +G T DLDRE
Sbjct: 1 GDSIEDKNARVIELIAAYRNRGHLMADIDPLRLDNTRFRSHP-DLDVNSHGLTLWDLDRE 59
Query: 168 FFIGVWRMAGFLSENRPVQTLRSILTRLEQAYCGSIGYEYMHIADRDQCNWLRDKIET-- 225
F ++ GF R + LR IL+ L AYC +G EY HI + +Q W+++++ET
Sbjct: 60 F-----KVDGFAGVQR--KKLRDILSVLRDAYCRHVGVEYTHILEPEQQRWIQERVETKH 112
Query: 226 --PTPMQYNRQRREVILDRLIWSTQFENFLATKWTTAKRFGLEGGETLIPGMKEMFDRAA 283
PT + ++ IL +L + FE FL TK+ KRF LEG ET+IP M + D+ A
Sbjct: 113 DKPTVAE-----QKYILSKLNAAEAFETFLQTKYVGQKRFSLEGAETVIPMMDAVIDQCA 167
Query: 284 DLGVESIVIGMPHRGRLNVLGNVVRKPLRQIFSEFSGGTKPVDEDGLYTGTGDVKYHLG- 342
+ G++ +VI MPHRGRLNVL N+V KP QIFSEF G P G +GDVKYHLG
Sbjct: 168 EHGLDEVVIAMPHRGRLNVLANIVGKPYSQIFSEFEGNLNPSQAHG----SGDVKYHLGA 223
Query: 343 TSYDRPTRGGKRIHLSLVANPSHLEAVDPVVVGKTRAKQYY-----SHDVDRTKNMGVLI 397
T G I +SL ANPSHLEAVDPV+ G RAKQ +R + +++
Sbjct: 224 TGTYIQMFGDNDIEVSLTANPSHLEAVDPVLEGLVRAKQDLLDTGEEGSDNRFSVVPLML 283
Query: 398 HGDGSFAGQGVVYETLHLSALPNYTTGGTIHIVVNNQVAFTTDPRAGRSSQYCTD----- 452
HGD +FAGQGVV ETL+L+ L Y TGGTIHIVVNNQ+ FTT P RSS+YCTD
Sbjct: 284 HGDAAFAGQGVVAETLNLALLRGYRTGGTIHIVVNNQIGFTTAPTDSRSSEYCTDVAKMI 343
Query: 453 -------------AVVHVCELAAEWRQKFHSDVVVDLVCYRRFGHNEIDEPSFTQPKMYQ 499
A V LA ++RQ F DVV+D++CYRR GHNE D+PS TQP MY
Sbjct: 344 GAPIFHVNGDDPEACAWVARLAVDFRQAFKKDVVIDMLCYRRRGHNEGDDPSMTQPYMYD 403
Query: 500 VIRSHPSAFEIYQKKLLESAQVTQED----INRIQEKVNTILNEEFMASKDYVPKRRDWL 555
VI + + + Y + L+ ++ ++ + Q ++ + NE K +
Sbjct: 404 VIDTKRGSRKAYTEALIGRGDISMKEAEDALRDYQGQLERVFNEVRELEKHEIEPSE--- 460
Query: 556 SAYWAGFKSPEQVSRIRNTGVKPEILKNVGKAITNLPENFKPHRGVKKVYEQRAQMIETG 615
++ +Q+ T V +L+ +G A LPE F H V+ V E+R +M G
Sbjct: 461 -----SVEADQQIPSKLATAVDKAMLQRIGDAHLALPEGFTVHPRVRPVLEKRREMAYEG 515
Query: 616 EGIDWAVGEALAFATLLVEGNHVRLSGQDVERGTFSHRHSVLHDQETGEKYCPLDHVMMN 675
IDWA E LA +L+ EG VRLSGQD +RGTF+ RH+V+ D++TGE++ PL + N
Sbjct: 516 R-IDWAFAELLALGSLIAEGKLVRLSGQDTQRGTFTQRHAVIVDRKTGEEFTPLQLLATN 574
Query: 676 QDEE----MFTVSNSSLSEFGVLGFELGYSMENPNSLVLWEAQFGDFANGAQVIFDQFLS 731
D F V NS+LSEF +GFE GYS+ NP+++VLWEAQFGDF NGAQ I D+F+S
Sbjct: 575 PDGTPTGGKFLVYNSALSEFAAVGFEYGYSVGNPDAMVLWEAQFGDFVNGAQSIIDEFIS 634
Query: 732 SGESKWLRQTGLVVLLPHGYDGQGPEHSSARLERFLQMSDDNPFVIPEMDPTLRKQIQEC 791
SGE+KW + + +V+LLPHG++GQGP+H+S R+ERFLQ+ E
Sbjct: 635 SGEAKWGQLSDVVLLLPHGHEGQGPDHTSGRIERFLQL------------------WAEG 676
Query: 792 NWQIVNVTTPANYFHVLRRQIHRGFRKPLIVISPKNLLRHKDCKSNLSEFDDVQGHPGFD 851
+ I +TPANYFH+LRR G ++PLIV +PK++LR+K S++ +F +
Sbjct: 677 SMTIAMPSTPANYFHLLRRHGKDGIQRPLIVFTPKSMLRNKAAVSDIRDFTE-------- 728
Query: 852 KQGTRFKRLIKD---QNGHSDLEEGIRRLVLCSGKVF 885
++F+ ++++ +G D + + RL+L SGK++
Sbjct: 729 ---SKFRSVLEEPMYTDGEGDRNK-VTRLLLTSGKIY 761
>pdb|2XT6|A Chain A, Crystal Structure Of Mycobacterium Smegmatis
Alpha-Ketoglutarate Decarboxylase Homodimer (Orthorhombic
Form)
pdb|2XT6|B Chain B, Crystal Structure Of Mycobacterium Smegmatis
Alpha-Ketoglutarate Decarboxylase Homodimer (Orthorhombic
Form)
Length = 1113
Score = 580 bits (1496), Expect = e-166, Method: Compositional matrix adjust.
Identities = 338/811 (41%), Positives = 473/811 (58%), Gaps = 98/811 (12%)
Query: 117 ESMRLLLLVRAYQVNGHMKAKLDPLGLEE---REIPEDLDPALYGFTEADLDREFFIGVW 173
++ R++ L+ AY+ GH+ A +DPL L+ R P DLD +G T DLDREF
Sbjct: 252 KNARVIELIAAYRNRGHLMADIDPLRLDNTRFRSHP-DLDVNSHGLTLWDLDREF----- 305
Query: 174 RMAGFLSENRPVQTLRSILTRLEQAYCGSIGYEYMHIADRDQCNWLRDKIET----PTPM 229
++ GF R + LR IL+ L AYC +G EY HI + +Q W+++++ET PT
Sbjct: 306 KVDGFAGVQR--KKLRDILSVLRDAYCRHVGVEYTHILEPEQQRWIQERVETKHDKPTVA 363
Query: 230 QYNRQRREVILDRLIWSTQFENFLATKWTTAKRFGLEGGETLIPGMKEMFDRAADLGVES 289
+ ++ IL +L + FE FL TK+ KRF LEG ET+IP M + D+ A+ G++
Sbjct: 364 E-----QKYILSKLNAAEAFETFLQTKYVGQKRFSLEGAETVIPMMDAVIDQCAEHGLDE 418
Query: 290 IVIGMPHRGRLNVLGNVVRKPLRQIFSEFSGGTKPVDEDGLYTGTGDVKYHLG-TSYDRP 348
+VI MPHRGRLNVL N+V KP QIFSEF G P G +GDVKYHLG T
Sbjct: 419 VVIAMPHRGRLNVLANIVGKPYSQIFSEFEGNLNPSQAHG----SGDVKYHLGATGTYIQ 474
Query: 349 TRGGKRIHLSLVANPSHLEAVDPVVVGKTRAKQYY-----SHDVDRTKNMGVLIHGDGSF 403
G I +SL ANPSHLEAVDPV+ G RAKQ +R + +++HGD +F
Sbjct: 475 MFGDNDIEVSLTANPSHLEAVDPVLEGLVRAKQDLLDTGEEGSDNRFSVVPLMLHGDAAF 534
Query: 404 AGQGVVYETLHLSALPNYTTGGTIHIVVNNQVAFTTDPRAGRSSQYCTD----------- 452
AGQGVV ETL+L+ L Y TGGTIHIVVNNQ+ FTT P RSS+YCTD
Sbjct: 535 AGQGVVAETLNLALLRGYRTGGTIHIVVNNQIGFTTAPTDSRSSEYCTDVAKMIGAPIFH 594
Query: 453 -------AVVHVCELAAEWRQKFHSDVVVDLVCYRRFGHNEIDEPSFTQPKMYQVIRSHP 505
A V LA ++RQ F DVV+D++CYRR GHNE D+PS TQP MY VI +
Sbjct: 595 VNGDDPEACAWVARLAVDFRQAFKKDVVIDMLCYRRRGHNEGDDPSMTQPYMYDVIDTKR 654
Query: 506 SAFEIYQKKLLESAQVTQED----INRIQEKVNTILNEEFMASKDYVPKRRDWLSAYWAG 561
+ + Y + L+ ++ ++ + Q ++ + NE K +
Sbjct: 655 GSRKAYTEALIGRGDISMKEAEDALRDYQGQLERVFNEVRELEKHEIEPSE--------S 706
Query: 562 FKSPEQVSRIRNTGVKPEILKNVGKAITNLPENFKPHRGVKKVYEQRAQMIETGEGIDWA 621
++ +Q+ T V +L+ +G A LPE F H V+ V E+R +M G IDWA
Sbjct: 707 VEADQQIPSKLATAVDKAMLQRIGDAHLALPEGFTVHPRVRPVLEKRREMAYEGR-IDWA 765
Query: 622 VGEALAFATLLVEGNHVRLSGQDVERGTFSHRHSVLHDQETGEKYCPLDHVMMNQDEE-- 679
E LA +L+ EG VRLSGQD +RGTF+ RH+V+ D++TGE++ PL + N D
Sbjct: 766 FAELLALGSLIAEGKLVRLSGQDTQRGTFTQRHAVIVDRKTGEEFTPLQLLATNPDGTPT 825
Query: 680 --MFTVSNSSLSEFGVLGFELGYSMENPNSLVLWEAQFGDFANGAQVIFDQFLSSGESKW 737
F V NS+LSEF +GFE GYS+ NP+++VLWEAQFGDF NGAQ I D+F+SSGE+KW
Sbjct: 826 GGKFLVYNSALSEFAAVGFEYGYSVGNPDAMVLWEAQFGDFVNGAQSIIDEFISSGEAKW 885
Query: 738 LRQTGLVVLLPHGYDGQGPEHSSARLERFLQMSDDNPFVIPEMDPTLRKQIQECNWQIVN 797
+ + +V+LLPHG++GQGP+H+S R+ERFLQ+ E + I
Sbjct: 886 GQLSDVVLLLPHGHEGQGPDHTSGRIERFLQL------------------WAEGSMTIAM 927
Query: 798 VTTPANYFHVLRRQIHRGFRKPLIVISPKNLLRHKDCKSNLSEFDDVQGHPGFDKQGTRF 857
+TPANYFH+LRR G ++PLIV +PK++LR+K S++ +F + ++F
Sbjct: 928 PSTPANYFHLLRRHGKDGIQRPLIVFTPKSMLRNKAAVSDIRDFTE-----------SKF 976
Query: 858 KRLIKD---QNGHSDLEEGIRRLVLCSGKVF 885
+ ++++ +G D + + RL+L SGK++
Sbjct: 977 RSVLEEPMYTDGEGDRNK-VTRLLLTSGKIY 1006
>pdb|4AI6|A Chain A, Dynein Motor Domain - Adp Complex
pdb|4AI6|B Chain B, Dynein Motor Domain - Adp Complex
pdb|4AKG|A Chain A, Dynein Motor Domain - Atp Complex
pdb|4AKG|B Chain B, Dynein Motor Domain - Atp Complex
pdb|4AKH|A Chain A, Dynein Motor Domain - Amppnp Complex
pdb|4AKH|B Chain B, Dynein Motor Domain - Amppnp Complex
pdb|4AKI|A Chain A, Dynein Motor Domain - Luac Derivative
pdb|4AKI|B Chain B, Dynein Motor Domain - Luac Derivative
Length = 2695
Score = 31.2 bits (69), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 35/151 (23%), Positives = 58/151 (38%), Gaps = 9/151 (5%)
Query: 179 LSENRPVQTLRSILTRLEQAYCGSIGYEYMHIADRDQCNWLRDKIETPTPMQYNRQRREV 238
S++ + + S L R S G + +D D+I P +Y Q +
Sbjct: 1301 FSKDTTTEHILSALHRHTNYVTTSKGLTLLPKSDIKNLVLFCDEINLPKLDKYGSQNVVL 1360
Query: 239 ILDRLIWSTQFENFLATKWTTAKRFGLEGGET--LIPG---MKEMFDRAADLGVESIVIG 293
L +L+ F KW T +R + G PG M E F R A + + +G
Sbjct: 1361 FLRQLMEKQGFWKTPENKWVTIERIHIVGACNPPTDPGRIPMSERFTRHAAI----LYLG 1416
Query: 294 MPHRGRLNVLGNVVRKPLRQIFSEFSGGTKP 324
P L+ + + K + ++ EF T+P
Sbjct: 1417 YPSGKSLSQIYEIYYKAIFKLVPEFRSYTEP 1447
>pdb|3QMZ|A Chain A, Crystal Structure Of The Cytoplasmic Dynein Heavy Chain
Motor Domain
pdb|3QMZ|B Chain B, Crystal Structure Of The Cytoplasmic Dynein Heavy Chain
Motor Domain
Length = 2486
Score = 31.2 bits (69), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 35/151 (23%), Positives = 58/151 (38%), Gaps = 9/151 (5%)
Query: 179 LSENRPVQTLRSILTRLEQAYCGSIGYEYMHIADRDQCNWLRDKIETPTPMQYNRQRREV 238
S++ + + S L R S G + +D D+I P +Y Q +
Sbjct: 1082 FSKDTTTEHILSALHRHTNYVTTSKGLTLLPKSDIKNLVLFCDEINLPKLDKYGSQNVVL 1141
Query: 239 ILDRLIWSTQFENFLATKWTTAKRFGLEGGET--LIPG---MKEMFDRAADLGVESIVIG 293
L +L+ F KW T +R + G PG M E F R A + + +G
Sbjct: 1142 FLRQLMEKQGFWKTPENKWVTIERIHIVGACNPPTDPGRIPMSERFTRHAAI----LYLG 1197
Query: 294 MPHRGRLNVLGNVVRKPLRQIFSEFSGGTKP 324
P L+ + + K + ++ EF T+P
Sbjct: 1198 YPSGKSLSQIYEIYYKAIFKLVPEFRSYTEP 1228
>pdb|3ODM|A Chain A, Archaeal-Type Phosphoenolpyruvate Carboxylase
pdb|3ODM|B Chain B, Archaeal-Type Phosphoenolpyruvate Carboxylase
pdb|3ODM|C Chain C, Archaeal-Type Phosphoenolpyruvate Carboxylase
pdb|3ODM|D Chain D, Archaeal-Type Phosphoenolpyruvate Carboxylase
pdb|3ODM|E Chain E, Archaeal-Type Phosphoenolpyruvate Carboxylase
pdb|3ODM|F Chain F, Archaeal-Type Phosphoenolpyruvate Carboxylase
pdb|3ODM|G Chain G, Archaeal-Type Phosphoenolpyruvate Carboxylase
pdb|3ODM|H Chain H, Archaeal-Type Phosphoenolpyruvate Carboxylase
Length = 560
Score = 30.4 bits (67), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 27/54 (50%), Gaps = 2/54 (3%)
Query: 546 DYVPKRRDWLSAYWAGFKSPEQVSRIRNTG--VKPEILKNVGKAITNLPENFKP 597
D++PK RD L+ G + +V+ + N VK E+LK +I N E P
Sbjct: 359 DFIPKNRDRLTKAKTGLEYNREVANLDNVADLVKDEVLKQEILSIDNSKEYAVP 412
>pdb|3F1S|A Chain A, Crystal Structure Of Protein Z Complexed With Protein
Z-Dependent Inhibitor
Length = 385
Score = 29.6 bits (65), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 31/134 (23%), Positives = 54/134 (40%), Gaps = 4/134 (2%)
Query: 482 FGHNEID--EPSFTQPKMYQVIRSHPSAF-EIYQKKLLESAQVTQEDINRIQEKVNTILN 538
F H + D E F K Y P F Q K L + + +E +I + + I
Sbjct: 108 FIHKDFDVKETFFNLSKRYFDTECVPMNFRNASQAKRLMNHYINKETRGKIPKLFDEINP 167
Query: 539 EEFMASKDYVPKRRDWLSAYWAGFKSPEQVSRIRNTGVKPEILKNVGKAITNLPENFKPH 598
E + DY+ + WL+ + F + + +K ++ GK + +NF+ H
Sbjct: 168 ETKLILVDYILFKGKWLTPFDPVFTEVDTFHLDKYKTIKVPMMYGAGKFASTFDKNFRCH 227
Query: 599 RGVKKVYEQRAQMI 612
+K Y+ A M+
Sbjct: 228 V-LKLPYQGNATML 240
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.135 0.410
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 29,699,244
Number of Sequences: 62578
Number of extensions: 1312388
Number of successful extensions: 2935
Number of sequences better than 100.0: 14
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 2888
Number of HSP's gapped (non-prelim): 14
length of query: 936
length of database: 14,973,337
effective HSP length: 108
effective length of query: 828
effective length of database: 8,214,913
effective search space: 6801947964
effective search space used: 6801947964
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 56 (26.2 bits)