Query 002323
Match_columns 936
No_of_seqs 409 out of 2524
Neff 5.3
Searched_HMMs 46136
Date Thu Mar 28 21:30:03 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002323.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/002323hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0450 2-oxoglutarate dehydro 100.0 1E-254 3E-259 2113.2 65.7 824 51-896 35-916 (1017)
2 PRK12270 kgd alpha-ketoglutara 100.0 3E-220 6E-225 1902.7 69.9 776 67-897 332-1133(1228)
3 COG0567 SucA 2-oxoglutarate de 100.0 3E-219 6E-224 1906.1 58.5 784 62-898 5-812 (906)
4 TIGR00239 2oxo_dh_E1 2-oxoglut 100.0 3E-209 7E-214 1863.0 76.3 790 66-899 1-839 (929)
5 PRK09404 sucA 2-oxoglutarate d 100.0 1E-207 3E-212 1856.9 77.6 786 63-896 10-829 (924)
6 KOG0451 Predicted 2-oxoglutara 100.0 4E-195 9E-200 1600.6 40.0 742 116-898 51-821 (913)
7 cd02016 TPP_E1_OGDC_like Thiam 100.0 2E-73 4.3E-78 609.3 20.4 247 249-498 1-265 (265)
8 COG1071 AcoA Pyruvate/2-oxoglu 100.0 1.6E-58 3.5E-63 509.3 27.8 298 229-563 22-346 (358)
9 PLN02269 Pyruvate dehydrogenas 100.0 3.3E-56 7.2E-61 497.5 30.0 294 229-561 25-343 (362)
10 PF00676 E1_dh: Dehydrogenase 100.0 9.6E-56 2.1E-60 484.0 21.3 272 241-551 1-299 (300)
11 PLN02374 pyruvate dehydrogenas 100.0 3.7E-54 8E-59 489.8 29.7 300 229-562 81-408 (433)
12 TIGR03182 PDH_E1_alph_y pyruva 100.0 8E-54 1.7E-58 471.8 27.2 288 233-559 1-314 (315)
13 CHL00149 odpA pyruvate dehydro 100.0 1.2E-51 2.7E-56 458.6 29.0 298 229-560 15-340 (341)
14 KOG0225 Pyruvate dehydrogenase 100.0 1.1E-51 2.4E-56 441.1 24.3 293 229-561 54-371 (394)
15 cd02000 TPP_E1_PDC_ADC_BCADC T 100.0 1.6E-49 3.6E-54 433.4 26.0 267 239-544 1-293 (293)
16 TIGR03181 PDH_E1_alph_x pyruva 100.0 9.3E-47 2E-51 419.8 28.5 285 229-561 19-329 (341)
17 KOG1182 Branched chain alpha-k 100.0 1.9E-42 4E-47 366.9 18.9 313 208-563 65-404 (432)
18 COG0022 AcoB Pyruvate/2-oxoglu 100.0 2.7E-34 5.8E-39 307.6 15.1 163 630-835 14-182 (324)
19 PRK12315 1-deoxy-D-xylulose-5- 100.0 1.9E-31 4.1E-36 315.6 31.4 385 287-893 62-480 (581)
20 KOG0525 Branched chain alpha-k 100.0 3.9E-30 8.5E-35 265.9 4.7 164 632-842 55-227 (362)
21 TIGR00204 dxs 1-deoxy-D-xylulo 99.9 1.2E-25 2.5E-30 268.0 25.8 342 361-893 108-515 (617)
22 PRK05899 transketolase; Review 99.9 6.8E-24 1.5E-28 253.7 29.2 379 361-893 115-530 (624)
23 KOG0524 Pyruvate dehydrogenase 99.9 6.3E-26 1.4E-30 238.0 8.0 158 632-836 49-215 (359)
24 PRK05444 1-deoxy-D-xylulose-5- 99.9 2.3E-23 4.9E-28 247.3 23.8 352 361-899 114-490 (580)
25 PF02779 Transket_pyr: Transke 99.9 2.3E-24 5E-29 219.6 11.3 176 617-832 2-178 (178)
26 PLN02582 1-deoxy-D-xylulose-5- 99.9 2.5E-21 5.4E-26 231.6 23.2 395 361-893 141-563 (677)
27 PRK12571 1-deoxy-D-xylulose-5- 99.9 1.2E-20 2.5E-25 226.2 24.9 192 630-893 331-524 (641)
28 cd07036 TPP_PYR_E1-PDHc-beta_l 99.9 1.7E-21 3.7E-26 197.5 10.8 153 630-826 9-167 (167)
29 TIGR00232 tktlase_bact transke 99.8 3.3E-19 7.2E-24 214.2 30.8 417 361-899 107-569 (653)
30 PTZ00182 3-methyl-2-oxobutanat 99.8 1.5E-20 3.2E-25 211.0 17.7 201 629-894 46-254 (355)
31 PRK11892 pyruvate dehydrogenas 99.8 2.2E-20 4.8E-25 215.7 16.3 199 629-893 153-360 (464)
32 PLN02234 1-deoxy-D-xylulose-5- 99.8 3.8E-19 8.3E-24 211.4 25.6 201 630-900 369-574 (641)
33 CHL00144 odpB pyruvate dehydro 99.8 5E-19 1.1E-23 196.9 16.4 205 629-899 15-230 (327)
34 PRK09212 pyruvate dehydrogenas 99.8 8.1E-19 1.7E-23 195.3 16.0 206 628-899 14-230 (327)
35 PLN02683 pyruvate dehydrogenas 99.8 2.7E-18 5.9E-23 192.9 16.7 210 628-899 37-257 (356)
36 PLN02225 1-deoxy-D-xylulose-5- 99.8 1.1E-17 2.3E-22 199.7 22.6 389 362-894 187-588 (701)
37 PLN02790 transketolase 99.8 3.2E-16 6.9E-21 188.7 30.1 416 359-893 100-560 (654)
38 PRK12754 transketolase; Review 99.7 1.8E-15 3.8E-20 181.8 31.0 416 362-893 112-569 (663)
39 PTZ00089 transketolase; Provis 99.7 2.3E-15 5E-20 181.5 29.5 404 361-894 113-569 (661)
40 PRK12753 transketolase; Review 99.7 9.7E-15 2.1E-19 176.0 32.7 410 362-893 112-569 (663)
41 cd07033 TPP_PYR_DXS_TK_like Py 99.7 3E-16 6.6E-21 157.1 10.9 145 630-826 9-156 (156)
42 smart00861 Transket_pyr Transk 99.6 2.6E-15 5.7E-20 151.3 13.9 160 622-826 4-167 (168)
43 PRK11864 2-ketoisovalerate fer 99.2 1.3E-10 2.7E-15 128.1 13.9 208 295-544 14-296 (300)
44 cd02007 TPP_DXS Thiamine pyrop 99.2 3.2E-11 6.9E-16 125.5 8.0 106 361-482 72-193 (195)
45 PRK05261 putative phosphoketol 99.1 9.4E-08 2E-12 116.5 30.8 180 265-480 48-284 (785)
46 COG1154 Dxs Deoxyxylulose-5-ph 99.0 4.9E-08 1.1E-12 114.3 25.1 171 679-901 356-532 (627)
47 TIGR03186 AKGDH_not_PDH alpha- 98.9 8.5E-07 1.9E-11 109.6 31.0 444 366-894 191-745 (889)
48 PRK09405 aceE pyruvate dehydro 98.9 1.7E-06 3.7E-11 107.0 31.0 454 366-894 197-748 (891)
49 PRK13012 2-oxoacid dehydrogena 98.8 2.3E-06 5.1E-11 106.1 29.4 445 366-894 205-753 (896)
50 KOG0523 Transketolase [Carbohy 98.8 1.4E-07 3.1E-12 110.0 17.1 396 364-900 118-535 (632)
51 cd02012 TPP_TK Thiamine pyroph 98.7 2.2E-08 4.7E-13 108.2 8.8 112 362-487 103-235 (255)
52 cd02011 TPP_PK Thiamine pyroph 98.3 1.9E-06 4.2E-11 91.9 9.1 116 285-445 16-134 (227)
53 COG0021 TktA Transketolase [Ca 98.2 0.0012 2.6E-08 78.9 30.5 113 365-480 117-249 (663)
54 cd00568 TPP_enzymes Thiamine p 98.2 1.5E-06 3.2E-11 86.8 4.2 99 362-478 44-168 (168)
55 cd02002 TPP_BFDC Thiamine pyro 98.0 6.4E-06 1.4E-10 83.8 4.9 59 364-439 49-110 (178)
56 cd02014 TPP_POX Thiamine pyrop 98.0 4E-06 8.6E-11 85.8 2.8 98 366-480 53-174 (178)
57 cd02004 TPP_BZL_OCoD_HPCL Thia 97.8 1.7E-05 3.8E-10 80.5 5.1 96 365-478 49-171 (172)
58 COG3958 Transketolase, C-termi 97.7 0.00039 8.5E-09 76.2 13.6 199 621-899 12-221 (312)
59 PF00456 Transketolase_N: Tran 97.7 5.3E-05 1.2E-09 85.4 6.8 111 365-485 112-249 (332)
60 PF13292 DXP_synthase_N: 1-deo 97.6 9E-05 2E-09 80.5 6.5 68 362-441 109-179 (270)
61 TIGR00759 aceE pyruvate dehydr 97.4 0.061 1.3E-06 67.2 28.4 71 366-442 191-266 (885)
62 PRK12270 kgd alpha-ketoglutara 97.4 8.7E-05 1.9E-09 91.3 3.9 98 713-831 652-755 (1228)
63 PRK07524 hypothetical protein; 97.4 0.00017 3.7E-09 85.8 6.3 102 365-483 408-533 (535)
64 cd03372 TPP_ComE Thiamine pyro 97.4 0.00033 7.1E-09 72.3 7.4 98 364-480 42-156 (179)
65 cd02017 TPP_E1_EcPDC_like Thia 97.4 0.00047 1E-08 78.9 8.8 75 363-443 117-196 (386)
66 cd02015 TPP_AHAS Thiamine pyro 97.3 0.00048 1E-08 71.0 6.3 100 364-480 50-175 (186)
67 PRK06725 acetolactate synthase 97.2 0.00034 7.4E-09 84.2 5.5 98 364-478 422-544 (570)
68 PRK07092 benzoylformate decarb 97.2 0.00053 1.1E-08 81.7 6.5 97 364-478 407-529 (530)
69 PRK08327 acetolactate synthase 97.1 0.0016 3.4E-08 78.5 10.0 97 366-478 432-566 (569)
70 cd02013 TPP_Xsc_like Thiamine 97.1 0.00038 8.3E-09 72.6 4.1 98 366-481 55-181 (196)
71 PRK11865 pyruvate ferredoxin o 97.1 0.0018 3.9E-08 72.2 9.6 61 363-435 68-130 (299)
72 cd02005 TPP_PDC_IPDC Thiamine 97.1 0.0012 2.6E-08 68.2 7.0 98 366-480 52-175 (183)
73 cd02006 TPP_Gcl Thiamine pyrop 97.0 0.00028 6.2E-09 73.8 2.0 55 366-437 59-116 (202)
74 PRK06163 hypothetical protein; 97.0 0.0013 2.9E-08 69.3 7.0 114 366-499 59-189 (202)
75 cd06586 TPP_enzyme_PYR Pyrimid 97.0 0.0023 5.1E-08 62.9 8.1 116 680-826 34-154 (154)
76 cd02009 TPP_SHCHC_synthase Thi 96.9 0.0013 2.8E-08 67.4 5.3 56 364-437 51-109 (175)
77 COG3959 Transketolase, N-termi 96.9 0.0059 1.3E-07 65.1 10.0 107 362-479 117-241 (243)
78 PRK08155 acetolactate synthase 96.8 0.0014 3E-08 78.8 5.7 98 364-478 419-542 (564)
79 PRK08266 hypothetical protein; 96.8 0.00085 1.9E-08 80.0 3.7 104 364-484 402-530 (542)
80 cd03371 TPP_PpyrDC Thiamine py 96.8 0.0036 7.9E-08 65.2 7.5 118 364-500 48-182 (188)
81 cd02008 TPP_IOR_alpha Thiamine 96.7 0.0026 5.6E-08 65.3 5.9 56 364-435 51-108 (178)
82 cd02010 TPP_ALS Thiamine pyrop 96.7 0.0016 3.6E-08 66.9 4.3 98 366-480 50-171 (177)
83 PRK06112 acetolactate synthase 96.7 0.0029 6.2E-08 76.3 7.0 97 364-478 437-559 (578)
84 PF02775 TPP_enzyme_C: Thiamin 96.7 0.00042 9.1E-09 69.0 -0.3 97 363-476 27-153 (153)
85 TIGR03846 sulfopy_beta sulfopy 96.5 0.0027 5.8E-08 65.8 4.5 95 366-479 44-156 (181)
86 cd02001 TPP_ComE_PpyrDC Thiami 96.5 0.004 8.8E-08 63.0 5.4 92 366-478 44-154 (157)
87 PRK11269 glyoxylate carboligas 96.4 0.0016 3.5E-08 78.6 2.8 57 364-437 419-478 (591)
88 PRK07064 hypothetical protein; 96.4 0.0048 1E-07 73.7 6.1 57 364-437 405-464 (544)
89 PRK07710 acetolactate synthase 96.4 0.0057 1.2E-07 73.7 6.8 99 364-480 424-549 (571)
90 PRK09124 pyruvate dehydrogenas 96.4 0.0023 5E-08 77.0 3.4 57 365-438 409-468 (574)
91 PRK06154 hypothetical protein; 96.3 0.003 6.5E-08 76.1 4.1 96 365-478 432-554 (565)
92 TIGR01504 glyox_carbo_lig glyo 96.3 0.0055 1.2E-07 74.2 6.1 57 364-437 418-477 (588)
93 PRK06546 pyruvate dehydrogenas 96.2 0.0066 1.4E-07 73.4 6.2 56 365-437 409-467 (578)
94 PRK07525 sulfoacetaldehyde ace 96.1 0.0054 1.2E-07 74.2 4.6 98 364-479 435-562 (588)
95 cd02003 TPP_IolD Thiamine pyro 96.0 0.013 2.7E-07 61.7 6.6 55 366-437 50-107 (205)
96 PRK12474 hypothetical protein; 96.0 0.0094 2E-07 71.0 6.1 57 364-437 389-448 (518)
97 CHL00099 ilvB acetohydroxyacid 96.0 0.0068 1.5E-07 73.3 4.8 54 364-434 430-485 (585)
98 PRK07449 2-succinyl-5-enolpyru 95.9 0.0084 1.8E-07 72.1 5.3 53 366-436 427-482 (568)
99 PRK11869 2-oxoacid ferredoxin 95.9 0.0099 2.1E-07 65.9 5.3 56 366-438 62-121 (280)
100 TIGR03297 Ppyr-DeCO2ase phosph 95.9 0.018 3.9E-07 66.0 7.4 96 364-479 221-336 (361)
101 TIGR00118 acolac_lg acetolacta 95.8 0.0098 2.1E-07 71.4 5.2 54 366-436 414-469 (558)
102 PRK07586 hypothetical protein; 95.8 0.0077 1.7E-07 71.5 4.3 57 364-437 385-444 (514)
103 PRK06456 acetolactate synthase 95.7 0.011 2.4E-07 71.2 4.9 100 364-480 421-546 (572)
104 PRK08199 thiamine pyrophosphat 95.7 0.017 3.7E-07 69.4 6.5 97 365-479 416-538 (557)
105 TIGR02720 pyruv_oxi_spxB pyruv 95.7 0.011 2.4E-07 71.3 5.0 95 365-478 409-531 (575)
106 TIGR02418 acolac_catab acetola 95.6 0.0075 1.6E-07 72.1 3.0 100 364-480 408-531 (539)
107 PRK06466 acetolactate synthase 95.5 0.0067 1.4E-07 73.2 2.3 56 364-436 423-481 (574)
108 PRK09628 oorB 2-oxoglutarate-a 95.5 0.021 4.6E-07 63.2 6.0 57 366-438 70-129 (277)
109 PRK08527 acetolactate synthase 95.5 0.022 4.8E-07 68.6 6.4 54 364-434 414-469 (563)
110 PRK08617 acetolactate synthase 95.4 0.016 3.4E-07 69.6 5.0 98 365-480 415-537 (552)
111 cd02018 TPP_PFOR Thiamine pyro 95.4 0.015 3.3E-07 62.7 4.4 62 365-438 65-130 (237)
112 PRK11866 2-oxoacid ferredoxin 95.4 0.019 4.1E-07 63.7 5.1 56 366-438 61-120 (279)
113 PRK08273 thiamine pyrophosphat 95.4 0.015 3.2E-07 70.7 4.7 57 364-436 415-479 (597)
114 PRK09259 putative oxalyl-CoA d 95.3 0.013 2.9E-07 70.6 3.9 51 366-434 426-478 (569)
115 PLN02573 pyruvate decarboxylas 95.3 0.025 5.4E-07 68.5 6.2 57 364-437 428-487 (578)
116 PRK05778 2-oxoglutarate ferred 95.2 0.017 3.7E-07 64.6 4.2 58 366-439 72-132 (301)
117 PRK09107 acetolactate synthase 95.2 0.0099 2.1E-07 72.1 2.3 56 364-436 430-488 (595)
118 PRK06882 acetolactate synthase 95.1 0.044 9.5E-07 66.1 7.4 54 364-434 421-476 (574)
119 PRK06276 acetolactate synthase 95.1 0.031 6.6E-07 67.8 5.9 56 365-437 420-478 (586)
120 PRK05858 hypothetical protein; 95.0 0.022 4.7E-07 68.4 4.6 52 366-434 409-462 (542)
121 PRK06048 acetolactate synthase 94.9 0.041 8.8E-07 66.3 6.4 53 365-434 415-469 (561)
122 PRK07282 acetolactate synthase 94.8 0.014 3E-07 70.4 2.2 56 364-434 418-473 (566)
123 cd03375 TPP_OGFOR Thiamine pyr 94.8 0.043 9.4E-07 57.3 5.5 57 366-438 53-112 (193)
124 PRK08979 acetolactate synthase 94.8 0.042 9.1E-07 66.4 6.1 54 364-434 421-476 (572)
125 TIGR03254 oxalate_oxc oxalyl-C 94.8 0.049 1.1E-06 65.5 6.7 52 365-434 418-471 (554)
126 TIGR03393 indolpyr_decarb indo 94.8 0.016 3.5E-07 69.4 2.4 98 364-478 404-526 (539)
127 PRK11867 2-oxoglutarate ferred 94.7 0.043 9.2E-07 61.1 5.3 56 366-438 71-130 (286)
128 PLN02470 acetolactate synthase 94.5 0.043 9.3E-07 66.5 5.4 54 364-434 426-481 (585)
129 PRK07979 acetolactate synthase 94.4 0.044 9.5E-07 66.2 5.2 55 364-434 421-476 (574)
130 PRK06457 pyruvate dehydrogenas 94.4 0.024 5.3E-07 68.0 3.0 55 364-434 396-452 (549)
131 TIGR03457 sulphoacet_xsc sulfo 94.4 0.066 1.4E-06 64.8 6.4 97 364-478 430-556 (579)
132 COG0028 IlvB Thiamine pyrophos 94.3 0.047 1E-06 65.9 5.1 99 366-481 410-533 (550)
133 PRK08611 pyruvate oxidase; Pro 94.2 0.034 7.3E-07 67.3 3.6 99 365-480 409-531 (576)
134 PRK07418 acetolactate synthase 94.1 0.09 1.9E-06 64.2 6.8 54 364-434 434-489 (616)
135 PRK07789 acetolactate synthase 94.0 0.097 2.1E-06 63.9 6.8 58 365-437 448-506 (612)
136 TIGR02177 PorB_KorB 2-oxoacid: 93.7 0.13 2.8E-06 57.4 6.7 58 366-439 55-115 (287)
137 cd03376 TPP_PFOR_porB_like Thi 93.7 0.17 3.7E-06 54.7 7.3 39 392-437 81-122 (235)
138 PRK08978 acetolactate synthase 93.2 0.068 1.5E-06 64.1 3.7 54 364-434 401-456 (548)
139 PRK08322 acetolactate synthase 93.2 0.091 2E-06 63.0 4.7 54 366-436 408-464 (547)
140 TIGR03336 IOR_alpha indolepyru 92.8 0.13 2.9E-06 62.6 5.3 59 364-438 403-464 (595)
141 TIGR03394 indol_phenyl_DC indo 92.5 0.11 2.4E-06 62.4 4.2 53 364-434 403-457 (535)
142 KOG1185 Thiamine pyrophosphate 92.2 0.7 1.5E-05 54.5 9.8 53 370-433 432-484 (571)
143 COG3957 Phosphoketolase [Carbo 92.1 1.2 2.6E-05 54.6 11.9 120 680-827 460-592 (793)
144 PRK06965 acetolactate synthase 91.3 0.48 1E-05 57.6 7.7 56 364-434 437-492 (587)
145 TIGR03336 IOR_alpha indolepyru 91.2 2.1 4.6E-05 52.4 13.0 113 689-831 54-168 (595)
146 COG3961 Pyruvate decarboxylase 90.8 0.33 7.2E-06 57.5 5.4 58 364-439 411-470 (557)
147 PF01855 POR_N: Pyruvate flavo 90.0 0.61 1.3E-05 50.5 6.3 112 687-832 42-160 (230)
148 PLN02980 2-oxoglutarate decarb 89.6 0.47 1E-05 64.4 6.1 52 367-436 764-819 (1655)
149 PRK08366 vorA 2-ketoisovalerat 85.5 3.3 7.1E-05 48.3 9.0 115 687-835 55-175 (390)
150 KOG1184 Thiamine pyrophosphate 85.1 0.58 1.3E-05 55.4 2.7 57 365-439 416-474 (561)
151 COG1013 PorB Pyruvate:ferredox 82.4 4.1 8.8E-05 45.8 7.8 136 366-519 72-242 (294)
152 PRK07119 2-ketoisovalerate fer 82.4 4.1 9E-05 46.8 8.1 113 687-829 54-174 (352)
153 TIGR03845 sulfopyru_alph sulfo 81.2 8.7 0.00019 39.2 9.1 108 687-828 40-156 (157)
154 PRK09622 porA pyruvate flavodo 80.6 5.4 0.00012 46.7 8.3 109 689-831 64-180 (407)
155 PRK08367 porA pyruvate ferredo 79.0 7.6 0.00016 45.4 8.8 111 688-832 57-175 (394)
156 PRK08659 2-oxoglutarate ferred 78.0 6.3 0.00014 45.7 7.8 116 683-829 51-174 (376)
157 PRK09627 oorA 2-oxoglutarate-a 75.9 7.7 0.00017 45.1 7.7 111 689-828 55-172 (375)
158 TIGR03710 OAFO_sf 2-oxoacid:ac 74.8 15 0.00032 45.0 10.0 118 687-833 243-367 (562)
159 COG3960 Glyoxylate carboligase 71.1 4.5 9.8E-05 45.9 4.1 106 360-483 415-560 (592)
160 TIGR03297 Ppyr-DeCO2ase phosph 66.1 20 0.00044 41.5 8.2 113 689-829 34-155 (361)
161 cd07034 TPP_PYR_PFOR_IOR-alpha 60.9 98 0.0021 30.9 11.1 114 680-824 41-158 (160)
162 PF03894 XFP: D-xylulose 5-pho 60.7 75 0.0016 33.5 10.2 151 635-812 16-177 (179)
163 PRK08659 2-oxoglutarate ferred 58.0 23 0.00049 41.2 6.8 78 402-487 77-178 (376)
164 COG4231 Indolepyruvate ferredo 57.2 87 0.0019 38.8 11.5 183 682-899 59-273 (640)
165 TIGR02176 pyruv_ox_red pyruvat 54.9 48 0.001 44.2 9.6 110 687-831 57-174 (1165)
166 COG2609 AceE Pyruvate dehydrog 54.3 5.7E+02 0.012 32.6 19.3 40 389-434 219-261 (887)
167 cd03377 TPP_PFOR_PNO Thiamine 52.7 50 0.0011 38.4 8.2 37 393-435 153-190 (365)
168 KOG4166 Thiamine pyrophosphate 48.1 34 0.00074 40.4 5.9 59 366-439 526-585 (675)
169 PRK09627 oorA 2-oxoglutarate-a 45.2 31 0.00066 40.2 5.1 78 402-487 76-177 (375)
170 cd07038 TPP_PYR_PDC_IPDC_like 42.5 27 0.00059 35.6 3.7 78 392-476 61-160 (162)
171 PF09851 SHOCT: Short C-termin 40.6 36 0.00078 25.7 3.2 26 508-534 5-30 (31)
172 cd06586 TPP_enzyme_PYR Pyrimid 38.6 80 0.0017 30.8 6.3 78 392-476 61-152 (154)
173 PF01855 POR_N: Pyruvate flavo 38.6 47 0.001 36.2 5.0 77 403-486 66-161 (230)
174 cd07035 TPP_PYR_POX_like Pyrim 38.2 53 0.0011 32.5 5.0 78 392-476 61-153 (155)
175 cd07039 TPP_PYR_POX Pyrimidine 33.9 1.8E+02 0.004 29.6 8.2 78 392-476 65-156 (164)
176 KOG4166 Thiamine pyrophosphate 33.5 1.4E+02 0.0029 35.7 7.7 139 306-476 88-248 (675)
177 TIGR03710 OAFO_sf 2-oxoacid:ac 33.1 49 0.0011 40.6 4.5 75 402-485 266-365 (562)
178 PF02776 TPP_enzyme_N: Thiamin 32.7 2.2E+02 0.0048 28.9 8.6 121 680-831 39-166 (172)
179 KOG1615 Phosphoserine phosphat 32.6 4.2E+02 0.009 28.8 10.5 98 270-404 88-185 (227)
180 PRK13029 2-oxoacid ferredoxin 32.5 2E+02 0.0044 38.5 10.0 40 790-829 175-216 (1186)
181 PF10925 DUF2680: Protein of u 31.2 93 0.002 27.1 4.6 31 510-540 22-52 (59)
182 PRK07525 sulfoacetaldehyde ace 28.4 1.6E+02 0.0035 36.1 7.8 78 392-476 70-161 (588)
183 cd07035 TPP_PYR_POX_like Pyrim 27.4 5.7E+02 0.012 25.2 10.3 114 680-825 34-154 (155)
184 PF08312 cwf21: cwf21 domain; 27.3 1.3E+02 0.0029 24.9 4.6 32 508-540 13-44 (46)
185 PRK08367 porA pyruvate ferredo 26.4 99 0.0022 36.3 5.4 77 402-485 79-175 (394)
186 PRK06457 pyruvate dehydrogenas 24.9 1.6E+02 0.0035 35.8 6.9 35 786-822 480-514 (549)
187 PRK07119 2-ketoisovalerate fer 23.9 1.1E+02 0.0023 35.5 4.9 74 403-485 78-176 (352)
188 PF02776 TPP_enzyme_N: Thiamin 22.7 2.6E+02 0.0057 28.4 7.1 78 392-476 66-159 (172)
189 cd07037 TPP_PYR_MenD Pyrimidin 22.4 1.8E+02 0.0039 29.9 5.8 78 392-476 62-160 (162)
190 KOG3350 Uncharacterized conser 21.6 67 0.0015 34.1 2.4 38 855-892 134-183 (217)
191 PRK08569 rpl18p 50S ribosomal 21.1 4.1E+02 0.0088 28.6 8.1 87 453-541 81-192 (193)
192 TIGR02176 pyruv_ox_red pyruvat 20.7 2.9E+02 0.0064 37.1 8.5 37 392-435 952-990 (1165)
193 PRK12474 hypothetical protein; 20.5 2.2E+02 0.0048 34.3 6.9 78 392-476 70-162 (518)
194 PRK08611 pyruvate oxidase; Pro 20.3 1.8E+02 0.0039 35.7 6.1 35 786-822 491-525 (576)
195 cd08325 CARD_CASP1-like Caspas 20.1 1.2E+02 0.0026 27.8 3.6 41 505-545 15-55 (83)
No 1
>KOG0450 consensus 2-oxoglutarate dehydrogenase, E1 subunit [Carbohydrate transport and metabolism]
Probab=100.00 E-value=1.3e-254 Score=2113.18 Aligned_cols=824 Identities=63% Similarity=1.076 Sum_probs=783.2
Q ss_pred CCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHhhCCCCCCHHHHHHHhhccC------CCCCCCC---------------
Q 002323 51 APVPRPVPLSKLTDSFLDGTSSVYLEELQRAWEADPNSVDESWDNFFRNFVG------QAATSPG--------------- 109 (936)
Q Consensus 51 ~~~~~~~~~~~~~~s~l~g~Na~YIEelY~~y~~DP~SVd~sWr~~F~~l~~------~~~~~~~--------------- 109 (936)
.+.++.++++...++||+|+++.||||||+.|++||+|||.||++||++..+ ++++.|+
T Consensus 35 ~~~~r~~~~~~~td~Fl~g~ss~YveEmy~AW~~dP~SVh~SWDayFrn~~~~~~~~~~a~~~p~~~~~~~~~t~~~~~~ 114 (1017)
T KOG0450|consen 35 QQVPRSVAASVATDPFLSGTSSSYVEEMYRAWLEDPNSVHKSWDAYFRNVSAGAPPPAQASQAPLSRSAAVAGTQSAVAA 114 (1017)
T ss_pred ccccccccCcccccccccCcchHHHHHHHHHHHcCCchhhhhHHHHHHhcccCCCCccccccCCCccccccccccccccc
Confidence 5567778888889999999999999999999999999999999999998843 1222221
Q ss_pred -----CChhhHHHHHHHHHHHHHHhhcCccccccCCCCCCC---C-----CCCCCCCccccCCCcccccceeecCccccc
Q 002323 110 -----ISGQTIQESMRLLLLVRAYQVNGHMKAKLDPLGLEE---R-----EIPEDLDPALYGFTEADLDREFFIGVWRMA 176 (936)
Q Consensus 110 -----~~~~~~~~~~~v~~lI~ayr~~GH~~A~lDPL~~~~---~-----~~~~~L~~~~~gl~~~dl~~~~~~~~~~~~ 176 (936)
.+++.+.++++|+.|||||+.+||..|+|||||+.. + +.+++|++.+|||+|+|||++|.+. ++
T Consensus 115 ~~~t~~s~~~v~~hl~vqlLiRaYQirGH~~A~LDPLGi~~~~~~~~~p~~i~~~~~l~~Ygf~E~DLDref~L~---~t 191 (1017)
T KOG0450|consen 115 RPNTGISDKTVEDHLKVQLLIRAYQIRGHHKAKLDPLGINDADLDSSVPADIPEELTLAFYGFTEADLDREFHLP---TT 191 (1017)
T ss_pred ccCCCcccccHHHHHHHHHHHHHHHhcccccccCCccccccccccccCCCCCChhhhhhhcCCchhhccceeccC---Cc
Confidence 234678999999999999999999999999999843 1 2466799999999999999999984 45
Q ss_pred ccccCCCCCcCHHHHHHHHHHHhcCCccccccccCCHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q 002323 177 GFLSENRPVQTLRSILTRLEQAYCGSIGYEYMHIADRDQCNWLRDKIETPTPMQYNRQRREVILDRLIWSTQFENFLATK 256 (936)
Q Consensus 177 ~~~~~~~~~~tl~ei~~~L~~~YCg~ig~E~~hi~~~e~r~Wl~~~iE~~~~~~ls~e~~~~il~~M~~ar~fE~fl~~k 256 (936)
+|++++++.+|||||+++|+++||++||+|||||.|.++|+||++|||++....++.|+|+-||++|+++..||+||++|
T Consensus 192 ~Fi~~~~~~ltLreIl~rlE~~YC~~igvEfmhI~~~eqcnWir~k~EtP~~~q~s~e~k~~il~RL~~st~FE~FLa~K 271 (1017)
T KOG0450|consen 192 TFIGGGESSLTLREILRRLEKAYCGSIGVEFMHINDLEQCNWIRQKFETPGPMQYSHEQKRVILDRLTRSTRFEEFLATK 271 (1017)
T ss_pred ccccCCCccccHHHHHHHHHHHhhccceeEEEeeCcHHHhHHHHHhccCCCccccCHHHHHHHHHHHHHhhHHHHHHhhh
Confidence 78888889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhccccccCCcchhhhhHHHHHHHHhhCCCCcEEecCCCCchHHHHHhhcCCCHHHHHHhhcCCCCCCCCCCCccCCCC
Q 002323 257 WTTAKRFGLEGGETLIPGMKEMFDRAADLGVESIVIGMPHRGRLNVLGNVVRKPLRQIFSEFSGGTKPVDEDGLYTGTGD 336 (936)
Q Consensus 257 ~~~~KrfgleG~Eali~gl~~li~~A~~~Gv~DivigM~HRgrlnvLa~vlg~p~~~ifaEf~G~~~~~~~G~~~ggsGD 336 (936)
|+..||||+||||++||||+.+++.++++||+++|+||+||||||+|+||+.||+++||+||.|... .. .||||
T Consensus 272 w~seKRFGLEGcE~lIP~mK~iiDrS~elGVe~iviGMpHRGRLNvL~NVvRKpl~qIfseF~g~~~-~D-----eGSGD 345 (1017)
T KOG0450|consen 272 WPSEKRFGLEGCEVLIPAMKTIIDRSSELGVESIVIGMPHRGRLNVLANVVRKPLEQIFSEFSGLEA-AD-----EGSGD 345 (1017)
T ss_pred CCccccccccchhhhhhHHHHHhhhhhhcCchheEecCCccchhHHHHHHHhhHHHHHHHhccCCCC-Cc-----CCCCc
Confidence 9999999999999999999999999999999999999999999999999999999999999999443 33 37999
Q ss_pred cccccccccCCCCC-CCceeeeeeccccCCCccccceeechhHHHHHhcCCCCCCceEEEEEecCcccCCCchHHHhhhc
Q 002323 337 VKYHLGTSYDRPTR-GGKRIHLSLVANPSHLEAVDPVVVGKTRAKQYYSHDVDRTKNMGVLIHGDGSFAGQGVVYETLHL 415 (936)
Q Consensus 337 VkyHlG~s~~~~~~-~g~~I~lsl~~NPSHLeav~PVa~G~ArA~q~~~~d~~~~~~v~v~~hGDgA~sGQGvv~EtLNl 415 (936)
||||||.+.++.+. +|+.|+|+|++||||||+++|||+|++||.|++.+|.+++|+|.|++||||||+|||||||||++
T Consensus 346 VKYHLG~~~~R~~r~s~k~i~LslVANPSHLEA~DPVV~GKtrA~q~y~~D~~~~k~m~ILiHGDaaFAgQGVVyET~hl 425 (1017)
T KOG0450|consen 346 VKYHLGMYYERPNRVSGKNITLSLVANPSHLEAVDPVVMGKTRAEQFYTGDEEGKKVMGILIHGDAAFAGQGVVYETFHL 425 (1017)
T ss_pred eeeeeccccccccccCCceeEEEEecCchhhcccCceeechHHHHHHhccccccceeEEEEEecchhhccCceEEEeecc
Confidence 99999999999988 99999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCccccEEEEEEeCCcccccCCCCCCCcchhhH------------------HHHHHHHHHHHHHHccCCCEEEEEE
Q 002323 416 SALPNYTTGGTIHIVVNNQVAFTTDPRAGRSSQYCTD------------------AVVHVCELAAEWRQKFHSDVVVDLV 477 (936)
Q Consensus 416 A~LP~Y~~GGtIhIV~NNQigfTT~~~~~rss~y~tD------------------AV~~a~~~A~e~rr~f~~pvlIdlv 477 (936)
+.||+|+||||||||+||||||||+|+.+|||+|||| ||..+|+.|.|||.+|++||+||+|
T Consensus 426 s~LP~YtT~GTvHvVvNNQIgFTTDPR~aRSspYcTDvar~v~aPIFHVNaDD~EAV~~vc~vAAeWR~tFh~DvVVDlV 505 (1017)
T KOG0450|consen 426 SDLPSYTTGGTVHVVVNNQIGFTTDPRFARSSPYCTDVARVVNAPIFHVNADDPEAVMHVCKVAAEWRKTFHKDVVVDLV 505 (1017)
T ss_pred ccCCCcccCCeEEEEEccccccccCcccccCCCCchhHHHHhCCCeEeecCCChHHHHHHHHHHHHHHHHhccCeEEEEE
Confidence 9999999999999999999999999999999999998 9999999999999999999999999
Q ss_pred eeecCCCCCCCCCCCCCHHHHHHHHcCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhhhcCCCc-cchhh
Q 002323 478 CYRRFGHNEIDEPSFTQPKMYQVIRSHPSAFEIYQKKLLESAQVTQEDINRIQEKVNTILNEEFMASKDYVPKR-RDWLS 556 (936)
Q Consensus 478 ~YRr~GHne~Ddp~ytqp~~y~~i~~~~dpl~~y~~~Li~eGilt~eei~~i~~~~~~~l~~a~~~A~~~~p~~-~~~~~ 556 (936)
||||+||||.|+|+||||.||++|++|++++++|.++|+++|.+|++|+++..+++...+++||+.++++.|.. .+|++
T Consensus 506 cyRR~GHNE~DeP~FTQPlMYk~I~k~~~~l~~Y~ekLl~egtvs~~evd~~~~k~~~I~eeafe~sKd~~~~~~rdWL~ 585 (1017)
T KOG0450|consen 506 CYRRHGHNEIDEPMFTQPLMYKQIRKHKPVLQKYAEKLLSEGTVSQQEVDEEIKKYDNILEEAFERSKDYKPLHIRDWLD 585 (1017)
T ss_pred EEeecCCCcccCccccchHHHHHHHcCCcHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHhhccccchhhhhhhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999865 89999
Q ss_pred hhccCCCCccccc---ccCCCCCChHHHHHHHHHhccCCCCCCchhHHHHHHHHHHHHHhcCCcccHHHHHHHHhhhhhh
Q 002323 557 AYWAGFKSPEQVS---RIRNTGVKPEILKNVGKAITNLPENFKPHRGVKKVYEQRAQMIETGEGIDWAVGEALAFATLLV 633 (936)
Q Consensus 557 ~~w~~~~~~~~~~---~~~~Tgv~~~~l~~i~~~~~~~P~~f~~h~~l~r~l~~R~~~~~~~~~iDWa~aE~LAfgsLl~ 633 (936)
.+|.+|+.|+... ..++|||+.+.|+.||+++.++||+|++|+.|+|+|+.|.+|+++ ++||||+||+|||||||.
T Consensus 586 spW~gF~spd~~~~i~~~~~Tgv~~e~L~~ig~~~ss~PE~F~~Hrgl~Ril~~R~~mi~~-~~iDwal~EalAFgsLl~ 664 (1017)
T KOG0450|consen 586 SPWPGFFSPDGQPKILPCPSTGVKEEILKHIGKVASSVPEGFKIHRGLKRILKNRAQMIKS-EGVDWALAEALAFGSLLK 664 (1017)
T ss_pred CCCccccCccCCCccccCCCCCCCHHHHHHHHHhhccCCcccchhhhHHHHHHHHHHhhhh-cccchHHHHHHHHHHHHh
Confidence 9999999874322 256799999999999999999999999999999999999999998 889999999999999999
Q ss_pred cCCcEEEecccCCCcccccccceeeecCCC-ceeecCCCCcccCCCcceEEEccCcchhHHHHHHhhhccCCCCcceeee
Q 002323 634 EGNHVRLSGQDVERGTFSHRHSVLHDQETG-EKYCPLDHVMMNQDEEMFTVSNSSLSEFGVLGFELGYSMENPNSLVLWE 712 (936)
Q Consensus 634 eg~~Vrl~GqDv~rGtF~~RHavl~dq~t~-~~y~pL~~l~~~~~~g~~rV~nspLSE~avlG~e~G~sl~g~~~LviwE 712 (936)
||.+||||||||+||||||||+|||||+++ ++|+||++|. .+|+++.|+||.|||+||||||+||||++|+.|||||
T Consensus 665 EG~hVRlSGQDVERGTFShRH~VLHDQ~~d~~~y~PlnhL~--~~Qa~ytV~NSSLSEygVLGFElGYsm~sPNaLVlWE 742 (1017)
T KOG0450|consen 665 EGIHVRLSGQDVERGTFSHRHHVLHDQEVDKRTYIPLNHLW--PNQAPYTVCNSSLSEYGVLGFELGYSMASPNALVLWE 742 (1017)
T ss_pred cCceEEeecccccccccccchhhhcccccCcceecchhhcC--CCCCceeeeccchhhhheecceecccccCCCceEEee
Confidence 999999999999999999999999999999 8999999999 7899999999999999999999999999999999999
Q ss_pred ccchhhhhhHHHHHHHHHhhhhhhhcCccccEEEcCccCCCCCccccCchhhhhhhcCCCCCCcccCCCchhhhhccccc
Q 002323 713 AQFGDFANGAQVIFDQFLSSGESKWLRQTGLVVLLPHGYDGQGPEHSSARLERFLQMSDDNPFVIPEMDPTLRKQIQECN 792 (936)
Q Consensus 713 aqFgDF~n~Aq~iidqfi~~~~~kw~~~s~lv~~lPhG~~G~GpeHSs~RiERfLQl~~~~~~~~~~~pg~~~~~~~~~N 792 (936)
||||||+|+||+||||||++|++||.+++||||+|||||+|+||||||+|+|||||||+|||++||.....+.+|+|+||
T Consensus 743 AQFGDFaNtAQ~IiDQFIssGqaKW~rqsGlVllLPHGyeG~GPEHSSaR~ERfLQm~nddp~~~p~~~~~~~~Ql~dcN 822 (1017)
T KOG0450|consen 743 AQFGDFANTAQCIIDQFISSGQAKWVRQSGLVLLLPHGYEGMGPEHSSARPERFLQMSNDDPDVFPDEEEFLQRQLQDCN 822 (1017)
T ss_pred hhhccccccchhhHHhHhccchhhhhhhcCeEEEccCCcCCCCcccccccHHHHHHhccCCCccCCcccHHHHHHHhcCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999987655889999999
Q ss_pred eEEEEcCCHHHHHHHHHHHHhcCCCCcEEEEccccccCCCCCCCCcccccccCCCCCCCCCCCceeEeecCCCCCCCCCC
Q 002323 793 WQIVNVTTPANYFHVLRRQIHRGFRKPLIVISPKNLLRHKDCKSNLSEFDDVQGHPGFDKQGTRFKRLIKDQNGHSDLEE 872 (936)
Q Consensus 793 ~~Vv~pstpa~~fhlLrrq~~r~~~~Pli~~~pK~Llr~~~~~S~l~ef~~~~~~~~~~~pg~~F~~vi~d~~~~~~~~~ 872 (936)
|+||||||||||||+|||||+|+||||||+|+||+|||||.|+|+++||.+ |+.||+||+|....+.+|+
T Consensus 823 w~vvn~tTPaNyfHvLRRQi~~~FRKPliif~pKsLLRHp~arS~~~ef~~----------g~~fq~vi~e~g~~~~~pe 892 (1017)
T KOG0450|consen 823 WQVVNCTTPANYFHVLRRQIHRPFRKPLIIFTPKSLLRHPEARSSFSEFDE----------GTGFQRVIPEDGKAAQNPE 892 (1017)
T ss_pred eEEEecCChHHHHHHHHHHhhhcccCceEEeccHHhhcCccccCCHHHhcc----------CCCCceeccccccccCChh
Confidence 999999999999999999999999999999999999999999999999996 6789999999777778899
Q ss_pred CccEEEEeCchhHHHHHHhhcccC
Q 002323 873 GIRRLVLCSGKVFITSLMKGGRSA 896 (936)
Q Consensus 873 ~v~rvilcsGkvyydL~~~r~~~~ 896 (936)
+|||||||||||||||.++|++.+
T Consensus 893 ~vkrlv~csGkVyydL~k~Rk~~~ 916 (1017)
T KOG0450|consen 893 NVKRLVFCSGKVYYDLTKERKEVG 916 (1017)
T ss_pred hceEEEEecceEehhhhHHHHhcC
Confidence 999999999999999999999877
No 2
>PRK12270 kgd alpha-ketoglutarate decarboxylase; Reviewed
Probab=100.00 E-value=3e-220 Score=1902.73 Aligned_cols=776 Identities=47% Similarity=0.789 Sum_probs=713.1
Q ss_pred CCCC-CHHHHHHHHHHHhhCCCCCCHHHHHHHhhccCC----CC--CCCCCChhhHHHHHHHHHHHHHHhhcCccccccC
Q 002323 67 LDGT-SSVYLEELQRAWEADPNSVDESWDNFFRNFVGQ----AA--TSPGISGQTIQESMRLLLLVRAYQVNGHMKAKLD 139 (936)
Q Consensus 67 l~g~-Na~YIEelY~~y~~DP~SVd~sWr~~F~~l~~~----~~--~~~~~~~~~~~~~~~v~~lI~ayr~~GH~~A~lD 139 (936)
+.|. ...|+-.+-+.-+.. |.=|...|+.+.-+ .+ ..+......+.|+.+|++||+|||.||||.|++|
T Consensus 332 IdGA~sg~FL~~ik~lLeG~----d~Fyd~iF~~L~iPYePvrw~~D~~~~~~~~i~K~arv~elI~ayR~rGHLmAd~d 407 (1228)
T PRK12270 332 IQGAESGEFLRTIHQLLLGE----DGFYDEIFESLRIPYEPVRWATDIPADHEDEVDKNARVMELIHAYRVRGHLMADTD 407 (1228)
T ss_pred eccHhHHHHHHHHHHHHhcc----cchHHHHHHHhCCCCCCccccCCCCCCchhhhhHHHHHHHHHHHHHhccchhccCC
Confidence 4444 455666655555434 56688888877311 01 1122345678999999999999999999999999
Q ss_pred CCCCCCCCCCCCCCccccCCCcccccceeecCcccccccccCCCCCcCHHHHHHHHHHHhcCCccccccccCCHHHHHHH
Q 002323 140 PLGLEEREIPEDLDPALYGFTEADLDREFFIGVWRMAGFLSENRPVQTLRSILTRLEQAYCGSIGYEYMHIADRDQCNWL 219 (936)
Q Consensus 140 PL~~~~~~~~~~L~~~~~gl~~~dl~~~~~~~~~~~~~~~~~~~~~~tl~ei~~~L~~~YCg~ig~E~~hi~~~e~r~Wl 219 (936)
||++..+ ..|+||+..||||-+|||++|.+| ||. |++.|+||||+..|+++||++||+|||||.|+|||.||
T Consensus 408 PL~~~~r-~hpdLd~~~hGLTlWDLdR~f~~g-----gf~--g~~~m~LrdiL~~LRdsYcr~vg~EymhI~dpeqr~W~ 479 (1228)
T PRK12270 408 PLEYRQR-SHPDLDVLTHGLTLWDLDREFPVG-----GFG--GKERMKLRDILGVLRDSYCRTVGIEYMHIQDPEQRRWL 479 (1228)
T ss_pred ccccccc-CCCCCCccccCCCHHhcCceeecC-----CcC--CcccccHHHHHHHHHHHHhhhheeeeeecCCHHHHHHH
Confidence 9998544 678999999999999999999998 454 77889999999999999999999999999999999999
Q ss_pred HHHhCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccCCcchhhhhHHHHHHHHhhCCCCcEEecCCCCch
Q 002323 220 RDKIETPTPMQYNRQRREVILDRLIWSTQFENFLATKWTTAKRFGLEGGETLIPGMKEMFDRAADLGVESIVIGMPHRGR 299 (936)
Q Consensus 220 ~~~iE~~~~~~ls~e~~~~il~~M~~ar~fE~fl~~k~~~~KrfgleG~Eali~gl~~li~~A~~~Gv~DivigM~HRgr 299 (936)
|+|||.+. .+++.+++++||++|..+++||.||++||.+|||||+||+|++||.|+.+++.|++.|.+++||||+||||
T Consensus 480 Q~rvE~~~-~kp~~~eq~~iL~~LnaaEaFEtFLqtkyvGqkRFslEG~Es~iplld~~~~~aa~~~l~evvigm~HRGR 558 (1228)
T PRK12270 480 QERVERPH-EKPTREEQKRILSKLNAAEAFETFLQTKYVGQKRFSLEGGESLIPLLDAVLDQAAEHGLDEVVIGMAHRGR 558 (1228)
T ss_pred HHHhhCCC-CCCCHHHHHHHHHHhhhHHHHHHHHhhhcccceeeeecchhhHHHHHHHHHHHHHhcCCceEEecccccch
Confidence 99999764 67899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhcCCCHHHHHHhhcCCCCCCCCCCCccCCCCcccccccccCCCCCCCceeeeeeccccCCCccccceeechhHH
Q 002323 300 LNVLGNVVRKPLRQIFSEFSGGTKPVDEDGLYTGTGDVKYHLGTSYDRPTRGGKRIHLSLVANPSHLEAVDPVVVGKTRA 379 (936)
Q Consensus 300 lnvLa~vlg~p~~~ifaEf~G~~~~~~~G~~~ggsGDVkyHlG~s~~~~~~~g~~I~lsl~~NPSHLeav~PVa~G~ArA 379 (936)
||||+||+|||+.+||+||.|+.++... +||||||||||+........|+.|.|+|++||||||+|+||+.|.+||
T Consensus 559 LNVLani~gK~y~qiF~EFegn~dp~~~----~GsGDVKYHlG~eG~~~~~~g~~~~v~laaNPSHLEavdpVleGivRa 634 (1228)
T PRK12270 559 LNVLANIVGKPYSQIFREFEGNLDPRSA----QGSGDVKYHLGAEGTFTQMFGDEIKVSLAANPSHLEAVDPVLEGIVRA 634 (1228)
T ss_pred HHHHHHHhcCCHHHHHHHhcCCCCcccc----CcCcceeeeccCceeeeccCCCeeEEEEecCchhhhhcchHhhhhhhh
Confidence 9999999999999999999999876554 589999999999988888888899999999999999999999999999
Q ss_pred HHHhcCCC-CCCceEEEEEecCcccCCCchHHHhhhccCCCCCccccEEEEEEeCCcccccCCCCCCCcchhhH------
Q 002323 380 KQYYSHDV-DRTKNMGVLIHGDGSFAGQGVVYETLHLSALPNYTTGGTIHIVVNNQVAFTTDPRAGRSSQYCTD------ 452 (936)
Q Consensus 380 ~q~~~~d~-~~~~~v~v~~hGDgA~sGQGvv~EtLNlA~LP~Y~~GGtIhIV~NNQigfTT~~~~~rss~y~tD------ 452 (936)
+|+..+.. ++..+++|++||||||+|||+|+||||||+|++|.||||||||+||||||||.|.++||+.||+|
T Consensus 635 kQd~l~~g~~~~~vlpi~~hGdaafagQGvV~Etlnla~l~~y~tGGtIhvivNNqiGftT~p~~~Rss~y~td~ak~~~ 714 (1228)
T PRK12270 635 KQDRLDKGEEGFTVLPILLHGDAAFAGQGVVAETLNLSQLRGYRTGGTIHIVVNNQVGFTTAPESSRSSEYATDVAKMIQ 714 (1228)
T ss_pred hhhhhcccccCCceeEEEEeccccccCCchHHHHHHHHhccCCCCCCeEEEEEecCcccccCccccccchhhHHHHhhcC
Confidence 99987732 34689999999999999999999999999999999999999999999999999999999999998
Q ss_pred ------------HHHHHHHHHHHHHHccCCCEEEEEEeeecCCCCCCCCCCCCCHHHHHHHHcCCCHHHHHHHHHHHcCC
Q 002323 453 ------------AVVHVCELAAEWRQKFHSDVVVDLVCYRRFGHNEIDEPSFTQPKMYQVIRSHPSAFEIYQKKLLESAQ 520 (936)
Q Consensus 453 ------------AV~~a~~~A~e~rr~f~~pvlIdlv~YRr~GHne~Ddp~ytqp~~y~~i~~~~dpl~~y~~~Li~eGi 520 (936)
||++++++|++||++|+||||||++|||++||||+|||+||||.||+.|+.++++.++|.+.||.+|.
T Consensus 715 ~PifhVNGdDpeAv~~va~lA~~yr~~f~~dVvIdlvcYRrrGHNEgDdPSmtqP~mY~~i~~~~svrk~yte~Ligrgd 794 (1228)
T PRK12270 715 APIFHVNGDDPEAVVRVARLAFEYRQRFHKDVVIDLVCYRRRGHNEGDDPSMTQPLMYDLIDAKRSVRKLYTEALIGRGD 794 (1228)
T ss_pred CCEEeECCCCHHHHHHHHHHHHHHHHHcCCCeEEEEEEEeecCCCCCCCcccCCchhhhhhhhcchHHHHHHHHHhhcCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHhhhcCCCccchhhhhccCCCCcccccccCCCCCChHHHHHHHHHhccCCCCCCchhH
Q 002323 521 VTQEDINRIQEKVNTILNEEFMASKDYVPKRRDWLSAYWAGFKSPEQVSRIRNTGVKPEILKNVGKAITNLPENFKPHRG 600 (936)
Q Consensus 521 lt~eei~~i~~~~~~~l~~a~~~A~~~~p~~~~~~~~~w~~~~~~~~~~~~~~Tgv~~~~l~~i~~~~~~~P~~f~~h~~ 600 (936)
+|+||++++.++++++|+++|++.++..+.+....... .........++|.|+.+.|+.|+++.+++||+|++||+
T Consensus 795 it~ee~e~~l~dy~~~Le~~f~e~re~~~~~~~~~~~~----~~~~~~~~~~~Tav~~~~l~~i~da~~~~PegFt~Hpk 870 (1228)
T PRK12270 795 ITVEEAEQALRDYQGQLERVFNEVREAEKKPPEPPESV----ESDQGPPAGVDTAVSAEVLERIGDAHVNLPEGFTVHPK 870 (1228)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCc----cccccCCCCCCCCCCHHHHHHHHHHhccCCCCCccChh
Confidence 99999999999999999999999987542211100000 01111223568999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCcccHHHHHHHHhhhhhhcCCcEEEecccCCCcccccccceeeecCCCceeecCCCCcccCCCcc
Q 002323 601 VKKVYEQRAQMIETGEGIDWAVGEALAFATLLVEGNHVRLSGQDVERGTFSHRHSVLHDQETGEKYCPLDHVMMNQDEEM 680 (936)
Q Consensus 601 l~r~l~~R~~~~~~~~~iDWa~aE~LAfgsLl~eg~~Vrl~GqDv~rGtF~~RHavl~dq~t~~~y~pL~~l~~~~~~g~ 680 (936)
|++++++|.+|+.+| +||||++|.|||||||.||.+|||+|||+.||||+||||||||.+||+.|+||++|+ +++|+
T Consensus 871 l~~~l~~R~~m~~~g-~iDWa~gEllAfGsLl~eG~~VRL~GQDsrRGTF~QRHavl~D~~tg~e~~Pl~~l~--~~q~~ 947 (1228)
T PRK12270 871 LKPLLEKRREMAREG-GIDWAFGELLAFGSLLLEGTPVRLSGQDSRRGTFSQRHAVLIDRETGEEYTPLQNLS--DDQGK 947 (1228)
T ss_pred hHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHhcCceeeeeccccCCcceeeeeEEEecCCCCcccCcHhhcC--CCcce
Confidence 999999999999864 699999999999999999999999999999999999999999999999999999999 89999
Q ss_pred eEEEccCcchhHHHHHHhhhccCCCCcceeeeccchhhhhhHHHHHHHHHhhhhhhhcCccccEEEcCccCCCCCccccC
Q 002323 681 FTVSNSSLSEFGVLGFELGYSMENPNSLVLWEAQFGDFANGAQVIFDQFLSSGESKWLRQTGLVVLLPHGYDGQGPEHSS 760 (936)
Q Consensus 681 ~rV~nspLSE~avlG~e~G~sl~g~~~LviwEaqFgDF~n~Aq~iidqfi~~~~~kw~~~s~lv~~lPhG~~G~GpeHSs 760 (936)
|.|+||+|||+|+||||||||+++|.+||+||||||||+||||.|||+||+|+|+||+++|++||+|||||+||||+|||
T Consensus 948 f~vydS~LSEyAa~GFEYGYSv~~pdaLVlWEAQFGDF~NGAQtiIDefIss~e~KWgQ~S~vvlLLPHGyEGQGPdHSS 1027 (1228)
T PRK12270 948 FLVYDSLLSEYAAMGFEYGYSVERPDALVLWEAQFGDFANGAQTIIDEFISSGEAKWGQRSGVVLLLPHGYEGQGPDHSS 1027 (1228)
T ss_pred EEEecchhhHHHhhccceeeecCCCcceeeehhhhcccccchHHHHHHHHhhhHhhhccccceEEEccCCcCCCCCCcch
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhhhhhhcCCCCCCcccCCCchhhhhccccceEEEEcCCHHHHHHHHHHHHhcCCCCcEEEEccccccCCCCCCCCccc
Q 002323 761 ARLERFLQMSDDNPFVIPEMDPTLRKQIQECNWQIVNVTTPANYFHVLRRQIHRGFRKPLIVISPKNLLRHKDCKSNLSE 840 (936)
Q Consensus 761 ~RiERfLQl~~~~~~~~~~~pg~~~~~~~~~N~~Vv~pstpa~~fhlLrrq~~r~~~~Pli~~~pK~Llr~~~~~S~l~e 840 (936)
+|||||||||+|+ ||.|++||||||||||||||.....++|||||+||+|||+|.|+|+++|
T Consensus 1028 aRiERfLqlcAe~------------------nm~Va~psTPA~yFHLLRrqa~~~~~rPLvVfTPKSmLR~KaA~S~ved 1089 (1228)
T PRK12270 1028 ARIERFLQLCAEG------------------NMTVAQPSTPANYFHLLRRQALSGPRRPLVVFTPKSMLRLKAAVSDVED 1089 (1228)
T ss_pred HHHHHHHHhhccC------------------CeEEEccCChHHHHHHHHHHhhcCCCCCeEEEChHHhhcchhhcCCHHH
Confidence 9999999999994 9999999999999999999999999999999999999999999999999
Q ss_pred ccccCCCCCCCCCCCceeEeecCCCCCCCCCCCccEEEEeCchhHHHHHHhhcccCC
Q 002323 841 FDDVQGHPGFDKQGTRFKRLIKDQNGHSDLEEGIRRLVLCSGKVFITSLMKGGRSAV 897 (936)
Q Consensus 841 f~~~~~~~~~~~pg~~F~~vi~d~~~~~~~~~~v~rvilcsGkvyydL~~~r~~~~~ 897 (936)
|++ |+|++||+|+.. .++++|||||||||||||||+++|++++-
T Consensus 1090 FT~-----------g~F~pVi~D~~~--~~~~~V~RVlLcSGKvYYdL~a~R~k~~~ 1133 (1228)
T PRK12270 1090 FTE-----------GKFRPVIDDPTV--DDGAKVRRVLLCSGKLYYDLAARREKDGR 1133 (1228)
T ss_pred hcc-----------CCceecCCCCCC--CCccceeEEEEEcchhHHHHHHHHHhcCC
Confidence 997 999999999975 46678999999999999999999998664
No 3
>COG0567 SucA 2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, and related enzymes [Energy production and conversion]
Probab=100.00 E-value=2.8e-219 Score=1906.05 Aligned_cols=784 Identities=53% Similarity=0.897 Sum_probs=739.8
Q ss_pred CCCCCCCCCCHHHHHHHHHHHhhCCCCCCHHHHHHHhhccCCC---CC--CC-CCChhhHHHHHHHHHHHHHHhhcCccc
Q 002323 62 LTDSFLDGTSSVYLEELQRAWEADPNSVDESWDNFFRNFVGQA---AT--SP-GISGQTIQESMRLLLLVRAYQVNGHMK 135 (936)
Q Consensus 62 ~~~s~l~g~Na~YIEelY~~y~~DP~SVd~sWr~~F~~l~~~~---~~--~~-~~~~~~~~~~~~v~~lI~ayr~~GH~~ 135 (936)
.+.++++|+|+.|||+||++|++||+|||++|+.||+++.... +. .. ........++.++++||+|||.+||+.
T Consensus 5 ~~~~~l~g~n~~~ie~ly~~~~~~p~svd~~w~~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~ayR~~Ghl~ 84 (906)
T COG0567 5 LNTSYLSGANAAYIEELYEQYLQDPNSVDPSWQEFFDGLSDPVRESFRRLAKKGNDPDATLKSVKVLRLINAYRSRGHLH 84 (906)
T ss_pred cccccccCcchHHHHHHHHHHhhCCcccCHHHHHHHHhcCcchhhhhhhhcccccchhhhHHHHHHHHHHHHHHHhchhh
Confidence 3678999999999999999999999999999999999985431 10 00 112345678999999999999999999
Q ss_pred cccCCCCCCCCCCCCCCCccccCCCcccccceeecCcccccccccCCCCCcCHHHHHHHHHHHhcCCccccccccCCHHH
Q 002323 136 AKLDPLGLEEREIPEDLDPALYGFTEADLDREFFIGVWRMAGFLSENRPVQTLRSILTRLEQAYCGSIGYEYMHIADRDQ 215 (936)
Q Consensus 136 A~lDPL~~~~~~~~~~L~~~~~gl~~~dl~~~~~~~~~~~~~~~~~~~~~~tl~ei~~~L~~~YCg~ig~E~~hi~~~e~ 215 (936)
|+||||++ +++.+++|++++||||++||++.|.++. .+. ++..+||+||++.|+++|||+||+|||||.|+++
T Consensus 85 a~ldPL~~-~~~~~~~l~~~~~glt~~d~~~~~~~~~----~~~--~~~~~~l~e~~~~l~~~Ycgsig~E~~hi~~~~~ 157 (906)
T COG0567 85 ANLDPLGL-KRPDVPELDPEFHGLTEADLDETFNIGD----GFL--GKETMTLRELIEILKKTYCGSIGVEYMHISDPEE 157 (906)
T ss_pred hcCCcccC-CCCCccccCHhhcCCCHHHHhccccccc----ccc--ccccccHHHHHHHHHHHhccceeeeeeccCCHHH
Confidence 99999997 6777899999999999999999998542 233 6788999999999999999999999999999999
Q ss_pred HHHHHHHhCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccCCcchhhhhHHHHHHHHhhCCCCcEEecCC
Q 002323 216 CNWLRDKIETPTPMQYNRQRREVILDRLIWSTQFENFLATKWTTAKRFGLEGGETLIPGMKEMFDRAADLGVESIVIGMP 295 (936)
Q Consensus 216 r~Wl~~~iE~~~~~~ls~e~~~~il~~M~~ar~fE~fl~~k~~~~KrfgleG~Eali~gl~~li~~A~~~Gv~DivigM~ 295 (936)
|.||++|||+ ..+.++.|+|+.||++|+.++.||+||++||+++||||+||+|++||+|+++|+.|+..|+++||+||+
T Consensus 158 ~~Wl~~riE~-~~~~~~~e~k~~~l~~L~~ae~fE~fl~~kf~g~KRFslEG~eslip~l~~~i~~~~~~G~~~vviGMa 236 (906)
T COG0567 158 KRWLQERIES-GKPTFTAEEKKAILKRLTAAEGFERFLHTKFPGAKRFSLEGGESLIPMLDELIDRAGKQGVKEVVIGMA 236 (906)
T ss_pred HHHHHHHHhc-CCCCCCHHHHHHHHHHHHHHHHHHHHhhccCCCCccccccchhhHHHHHHHHHHHHHhcCcceEEeccc
Confidence 9999999999 568899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCchHHHHHhhcCCCHHHHHHhhcCCCCCCCCCCCccCCCCcccccccccCCCCCCCceeeeeeccccCCCccccceeec
Q 002323 296 HRGRLNVLGNVVRKPLRQIFSEFSGGTKPVDEDGLYTGTGDVKYHLGTSYDRPTRGGKRIHLSLVANPSHLEAVDPVVVG 375 (936)
Q Consensus 296 HRgrlnvLa~vlg~p~~~ifaEf~G~~~~~~~G~~~ggsGDVkyHlG~s~~~~~~~g~~I~lsl~~NPSHLeav~PVa~G 375 (936)
||||||||+||||||++.||+||.|+.... ..+||||||+|++.++.+.+| .|||+|++||||||+|+||++|
T Consensus 237 HRGRLNvL~nvlgKp~~~if~eF~g~~~~~------~~sGDVKYH~G~~~~~~~~~~-~v~l~La~NPSHLE~v~PVV~G 309 (906)
T COG0567 237 HRGRLNVLVNVLGKPYRDIFDEFEGKSAEP------DLSGDVKYHLGFSSDRQTDGG-KVHLSLAFNPSHLEIVNPVVEG 309 (906)
T ss_pred ccchHHHHHHHhCCCHHHHHHHhCCCCCCC------CcccccccccccccccccCCC-eeEEEecCCcchhhhhchhhhc
Confidence 999999999999999999999999987554 348999999999999998887 8999999999999999999999
Q ss_pred hhHHHHHhcCCCCCCceEEEEEecCcccCCCchHHHhhhccCCCCCccccEEEEEEeCCcccccCCCCCCCcchhhH---
Q 002323 376 KTRAKQYYSHDVDRTKNMGVLIHGDGSFAGQGVVYETLHLSALPNYTTGGTIHIVVNNQVAFTTDPRAGRSSQYCTD--- 452 (936)
Q Consensus 376 ~ArA~q~~~~d~~~~~~v~v~~hGDgA~sGQGvv~EtLNlA~LP~Y~~GGtIhIV~NNQigfTT~~~~~rss~y~tD--- 452 (936)
++||+|++..|....++++|++|||+||+|||||+|||||++++||+||||||||+||||||||.|.++||++||||
T Consensus 310 ~vRa~Qd~~~d~~~~k~lpiliHGDAAfaGQGVV~Etlnls~~~gysvgGtiHiviNNQiGFTTsp~~sRSt~Y~TDvAK 389 (906)
T COG0567 310 SVRAKQDRLGDTERDKVLPILIHGDAAFAGQGVVAETLNLSRLDGYSVGGTWHIVINNQIGFTTSPADARSTPYCTDVAK 389 (906)
T ss_pred chHhhhhhhccCccceeEEEEEecChhcCCccHHHHHHHhhCCCCcccCCeEEEEEecCCCCCCCcccccCCCCCCChhh
Confidence 99999999999888899999999999999999999999999999999999999999999999999999999999998
Q ss_pred ---------------HHHHHHHHHHHHHHccCCCEEEEEEeeecCCCCCCCCCCCCCHHHHHHHHcCCCHHHHHHHHHHH
Q 002323 453 ---------------AVVHVCELAAEWRQKFHSDVVVDLVCYRRFGHNEIDEPSFTQPKMYQVIRSHPSAFEIYQKKLLE 517 (936)
Q Consensus 453 ---------------AV~~a~~~A~e~rr~f~~pvlIdlv~YRr~GHne~Ddp~ytqp~~y~~i~~~~dpl~~y~~~Li~ 517 (936)
||..|+++|++||++|++||+||++|||++||||+|+|++|||.||+.|++|+++.+.|.++|++
T Consensus 390 m~~aPifHVN~DDPEAv~~a~~~A~e~R~~F~kDvvIDlvcYRr~GHNE~DePs~TqP~mY~~I~~h~t~r~~ya~~Lv~ 469 (906)
T COG0567 390 MIEAPIFHVNADDPEAVLFAPALALEYRNGFKKDVVIDLVCYRRHGHNEGDEPSVTQPLMYQKIKKHPTVRKLYADKLIA 469 (906)
T ss_pred ccCCceeecccCCchhhhhhHHHHHHHHhhcCCCeeeecccCCCCCCCccccccccCHHHHHHHhcCCChhhhHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCHHHHHHHHHHHHHHHHHHHHHhhhcCCCccchhhhhccCCCCcccccccCCCCCChHHHHHHHHHhccCCCCCCc
Q 002323 518 SAQVTQEDINRIQEKVNTILNEEFMASKDYVPKRRDWLSAYWAGFKSPEQVSRIRNTGVKPEILKNVGKAITNLPENFKP 597 (936)
Q Consensus 518 eGilt~eei~~i~~~~~~~l~~a~~~A~~~~p~~~~~~~~~w~~~~~~~~~~~~~~Tgv~~~~l~~i~~~~~~~P~~f~~ 597 (936)
+|++|+++++.+.+++++.++..+...+.+. ..+++...|.++.... . ...+|+++.+.|++|+.+++++|++|++
T Consensus 470 ~gvis~~~~~~~~~~~r~~L~~~~~~~~~~~--~~~~~~~~~~~~~~~~-~-~~~~t~v~~~~L~~L~~kl~~~Pe~f~~ 545 (906)
T COG0567 470 EGVISEEEADELVNDYRDALDQGFEVVKEYK--EMDWLEGDWSGYLNAG-L-RHVDTGVPKKTLKELGKKLCTIPEGFEV 545 (906)
T ss_pred hccccHHHHHHHHHHHHHHhhhhhhHHhHHH--hhhccccccccccCCc-c-cccccccCHHHHHHHHHHhhcCCcceeh
Confidence 9999999999999999999999999988766 4567888899887654 2 5678999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHhcCCcccHHHHHHHHhhhhhhcCCcEEEecccCCCcccccccceeeecCCCceeecCCCCcccCC
Q 002323 598 HRGVKKVYEQRAQMIETGEGIDWAVGEALAFATLLVEGNHVRLSGQDVERGTFSHRHSVLHDQETGEKYCPLDHVMMNQD 677 (936)
Q Consensus 598 h~~l~r~l~~R~~~~~~~~~iDWa~aE~LAfgsLl~eg~~Vrl~GqDv~rGtF~~RHavl~dq~t~~~y~pL~~l~~~~~ 677 (936)
|++|++++++|.+|.+++.+|||+|||.|||||||.+|++|||+|||++||||+|||+|+|||+|++.|+||++|+ ..
T Consensus 546 h~~v~~~~~~r~~~~~~~~~iDW~~aE~LAfatll~eG~~iRlsGqDs~RGTF~hRHaVlhdq~~~~~y~PL~~l~--~~ 623 (906)
T COG0567 546 HPRVKKILEDRKAMAEGGQGIDWGMAETLAFATLLDEGHPIRLSGQDSGRGTFSHRHAVLHDQKTGETYIPLNHLS--KG 623 (906)
T ss_pred hHHHHHHHHHHHHHhccccccchhHHHHhcccceeccCCccccccccCCCcCccccceeeecccCccccChhhhcc--cc
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999999 88
Q ss_pred CcceEEEccCcchhHHHHHHhhhccCCCCcceeeeccchhhhhhHHHHHHHHHhhhhhhhcCccccEEEcCccCCCCCcc
Q 002323 678 EEMFTVSNSSLSEFGVLGFELGYSMENPNSLVLWEAQFGDFANGAQVIFDQFLSSGESKWLRQTGLVVLLPHGYDGQGPE 757 (936)
Q Consensus 678 ~g~~rV~nspLSE~avlG~e~G~sl~g~~~LviwEaqFgDF~n~Aq~iidqfi~~~~~kw~~~s~lv~~lPhG~~G~Gpe 757 (936)
+|.|.|+||+|||+||+|||||||+..|+.|||||||||||+||||++|||||+||+.||+++|+||++|||||+|||||
T Consensus 624 q~~f~v~nS~LSEeAvlgFEYGYs~~~p~~lvlWEAQFGDFaNgAQvviDQfisSge~KW~r~sgLv~lLPHgyEGQGPE 703 (906)
T COG0567 624 QGKFEVINSPLSEEAVLGFEYGYSLANPKTLVLWEAQFGDFANGAQVVIDQFISSGEQKWGRMSGLVMLLPHGYEGQGPE 703 (906)
T ss_pred cceEEEEechhhHHHHHhhhhhhhhcCCchhhhhhhhhcccccCCeeeeccccccHHHHHHHhcCceEEccCCCCCCCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCchhhhhhhcCCCCCCcccCCCchhhhhccccceEEEEcCCHHHHHHHHHHHHhcCCCCcEEEEccccccCCCCCCCC
Q 002323 758 HSSARLERFLQMSDDNPFVIPEMDPTLRKQIQECNWQIVNVTTPANYFHVLRRQIHRGFRKPLIVISPKNLLRHKDCKSN 837 (936)
Q Consensus 758 HSs~RiERfLQl~~~~~~~~~~~pg~~~~~~~~~N~~Vv~pstpa~~fhlLrrq~~r~~~~Pli~~~pK~Llr~~~~~S~ 837 (936)
|||+|||||||||+|+ ||+||+||||+||||+||||+.|.++||||+|+||+|||||.++|+
T Consensus 704 HSSaRlER~LQLcaE~------------------NmqV~~pstpaq~fHlLRrq~~r~~rkPLiimtPKslLR~~~a~S~ 765 (906)
T COG0567 704 HSSARLERFLQLCAEN------------------NMQVVVPSTPAQYFHLLRRQALRDFRKPLIVMTPKSLLRHKLAVSS 765 (906)
T ss_pred CccchhHHHHHhhHHh------------------CCEEEecCcHHHHHHHHHHHHhhcccCceEecChhhhhhccccCCc
Confidence 9999999999999993 9999999999999999999999999999999999999999999999
Q ss_pred cccccccCCCCCCCCCCCceeEeecCCCCCCCCCCCccEEEEeCchhHHHHHHhhcccCCc
Q 002323 838 LSEFDDVQGHPGFDKQGTRFKRLIKDQNGHSDLEEGIRRLVLCSGKVFITSLMKGGRSAVQ 898 (936)
Q Consensus 838 l~ef~~~~~~~~~~~pg~~F~~vi~d~~~~~~~~~~v~rvilcsGkvyydL~~~r~~~~~~ 898 (936)
++||++ +.|++||.|.+. ...+|+|||||||||||||.+.|++.+..
T Consensus 766 ~~el~~-----------~~F~~vl~d~~~---~~~~v~rvvlcSGKvyydl~~~r~~~g~~ 812 (906)
T COG0567 766 LEELTE-----------GTFQPVLEDIDE---LDPKVKRVVLCSGKVYYDLLEQREKDGRD 812 (906)
T ss_pred hhhhch-----------hhhhhhhccccc---cccceeeEEeeccchHHHHHHHHhhcCCc
Confidence 999998 699999999743 23349999999999999999999887643
No 4
>TIGR00239 2oxo_dh_E1 2-oxoglutarate dehydrogenase, E1 component. The E1 ortholog from Corynebacterium glutamicum is unusual in having an N-terminal extension that resembles the dihydrolipoamide succinyltransferase (E2) component of 2-oxoglutarate dehydrogenase.
Probab=100.00 E-value=3.1e-209 Score=1862.99 Aligned_cols=790 Identities=46% Similarity=0.768 Sum_probs=716.0
Q ss_pred CCCCCCHHHHHHHHHHHhhCCCCCCHHHHHHHhhccCC----C-C--------CC-CC---C--C---h-hhHHHHHHHH
Q 002323 66 FLDGTSSVYLEELQRAWEADPNSVDESWDNFFRNFVGQ----A-A--------TS-PG---I--S---G-QTIQESMRLL 122 (936)
Q Consensus 66 ~l~g~Na~YIEelY~~y~~DP~SVd~sWr~~F~~l~~~----~-~--------~~-~~---~--~---~-~~~~~~~~v~ 122 (936)
||+|.|+.|||+||++|++||+|||++|+.||+++.+. . + .. .. . . . ....+++++.
T Consensus 1 fl~g~n~~yie~lY~~~~~dP~sv~~~w~~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 80 (929)
T TIGR00239 1 YLSGANQSYIEELYEDYLTDPDSVDASWRSTFDQLPGPGPAPDQFHSPTRSYFRRLAKDASRGSVTISDPDTNVSQVKVL 80 (929)
T ss_pred CCCCCCHHHHHHHHHHHHhChhcCCHHHHHHHHhCcccCCccccccCchhhhhcccccccccccccccchhhhHHHHHHH
Confidence 78999999999999999999999999999999998311 1 1 00 00 0 0 0 1122578999
Q ss_pred HHHHHHhhcCccccccCCCCCCCCCCCCCCCccccCCCcccccceeecCcccccccccCC-CCCcCHHHHHHHHHHHhcC
Q 002323 123 LLVRAYQVNGHMKAKLDPLGLEEREIPEDLDPALYGFTEADLDREFFIGVWRMAGFLSEN-RPVQTLRSILTRLEQAYCG 201 (936)
Q Consensus 123 ~lI~ayr~~GH~~A~lDPL~~~~~~~~~~L~~~~~gl~~~dl~~~~~~~~~~~~~~~~~~-~~~~tl~ei~~~L~~~YCg 201 (936)
+||+|||.+||+.|+||||++..+...++|+|.+|||+++||++.|.++... +... ...+||+||+++|+++|||
T Consensus 81 ~LI~ayR~~GHl~A~lDPL~~~~~~~~~~l~~~~~gl~~~dl~~~~~~~~~~----~~~~~~~~~~l~eii~~L~~~YCg 156 (929)
T TIGR00239 81 QLIRAYRFRGHLHANLDPLGLKQQDKVPELDLSFYGLTEADLQETFNIGSFV----SGKDATMKLSNLELLQALKQTYCG 156 (929)
T ss_pred HHHHHHHHhcchheecCCCCCCCCCCCCccChhhcCCChHHhCceeeecccc----cCccccccCCHHHHHHHHHHHhcC
Confidence 9999999999999999999975566778999999999999999999876221 1112 2246999999999999999
Q ss_pred CccccccccCCHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccCCcchhhhhHHHHHHH
Q 002323 202 SIGYEYMHIADRDQCNWLRDKIETPTPMQYNRQRREVILDRLIWSTQFENFLATKWTTAKRFGLEGGETLIPGMKEMFDR 281 (936)
Q Consensus 202 ~ig~E~~hi~~~e~r~Wl~~~iE~~~~~~ls~e~~~~il~~M~~ar~fE~fl~~k~~~~KrfgleG~Eali~gl~~li~~ 281 (936)
+||+|||||.|+++|+||++|||+.....+++|+|++||++|++++.||+||++||+++||||+||+|++||+|+++++.
T Consensus 157 ~ig~E~~hi~~~~~r~Wl~~~iE~~~~~~~~~~~k~~il~~L~~ae~fE~fl~~kf~g~KRFslEG~eslip~l~~~i~~ 236 (929)
T TIGR00239 157 SIGAEYMHITSTEEKRWLQQRIESGERAQFNSEEKKRFLSRLTAAEGFERFLGAKFPGAKRFSLEGLDALVPMLKEIIRH 236 (929)
T ss_pred cceeeeecCCCHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhCCCCceeecccHHHHHHHHHHHHHH
Confidence 99999999999999999999999754678999999999999999999999999999999999999999999999999999
Q ss_pred HhhCCCCcEEecCCCCchHHHHHhhcCCCHHHHHHhhcCCCCCCCCCCCccCCCCcccccc-cccCCCCCCCceeeeeec
Q 002323 282 AADLGVESIVIGMPHRGRLNVLGNVVRKPLRQIFSEFSGGTKPVDEDGLYTGTGDVKYHLG-TSYDRPTRGGKRIHLSLV 360 (936)
Q Consensus 282 A~~~Gv~DivigM~HRgrlnvLa~vlg~p~~~ifaEf~G~~~~~~~G~~~ggsGDVkyHlG-~s~~~~~~~g~~I~lsl~ 360 (936)
|++.|++|+|+||+||||+|+|+||+|||+++||+||+|+..+... +|+||||||+| ++.+..+ .|+.++++|+
T Consensus 237 ~~~~gv~d~v~gmaHRGRlnvL~nv~gkp~~~if~ef~g~~~~~~~----~g~gdvKyHlg~~~~~~~~-~~~~~~~~l~ 311 (929)
T TIGR00239 237 SVNSGTRDVVLGMAHRGRLNVLVNVLGKPPEDIFSEFAGKHKSHLP----DGTGDVKYHMGRFSSDFTT-DGKLVHLALA 311 (929)
T ss_pred HHHcCCCeEEeccccCCcHHHHHHHhCCCHHHHHHHHcCCCCCccc----CCCCCcCccCCCccccccc-CCCcceeeec
Confidence 9999999999999999999999999999999999999998765322 36899999999 7777655 5667999999
Q ss_pred cccCCCccccceeechhHHHHHhcCC-CCCCceEEEEEecCcccCCCchHHHhhhccCCCCCccccEEEEEEeCCccccc
Q 002323 361 ANPSHLEAVDPVVVGKTRAKQYYSHD-VDRTKNMGVLIHGDGSFAGQGVVYETLHLSALPNYTTGGTIHIVVNNQVAFTT 439 (936)
Q Consensus 361 ~NPSHLeav~PVa~G~ArA~q~~~~d-~~~~~~v~v~~hGDgA~sGQGvv~EtLNlA~LP~Y~~GGtIhIV~NNQigfTT 439 (936)
+||||||+|+|||+|+|||+|+++++ ..+++.|+|++||||||+|||+||||||||.|++|.||||||||+||||||||
T Consensus 312 ~npSHLeav~Pva~G~ArA~q~~~~~~~~~~~~v~v~~~GDgA~agQG~v~EaLNlA~l~~lPvGGtIfvveNNqyg~tT 391 (929)
T TIGR00239 312 FNPSHLEIVSPVVIGSTRARLDRLNDSPESTKVLAILIHGDAAFAGQGVVQETLNMSKLRGYSVGGTIHIIINNQIGFTT 391 (929)
T ss_pred CCCcccccccchhhhHHHHHHHhcCCcccccceEEEEEeccccccCCChHHHHHHHHHhcCCCCCCEEEEEEeCCEEEEE
Confidence 99999999999999999999999764 45668999999999999889999999999999999999999999999999999
Q ss_pred CCCCCCCcchhhH------------------HHHHHHHHHHHHHHccCCCEEEEEEeeecCCCCCCCCCCCCCHHHHHHH
Q 002323 440 DPRAGRSSQYCTD------------------AVVHVCELAAEWRQKFHSDVVVDLVCYRRFGHNEIDEPSFTQPKMYQVI 501 (936)
Q Consensus 440 ~~~~~rss~y~tD------------------AV~~a~~~A~e~rr~f~~pvlIdlv~YRr~GHne~Ddp~ytqp~~y~~i 501 (936)
+++++|++.||+| ||++|+++|++|||+|+||||||++|||++||||+|+|+||+|+||+.|
T Consensus 392 ~~~~~~s~~~~sd~Ak~ygiP~~~VDG~D~~AV~~a~~~Ave~~r~g~gPvlIE~~tYR~~GHne~D~p~~yrp~~~~~i 471 (929)
T TIGR00239 392 NPLDARSTPYCSDLAKMIQAPIFHVNADDPEAVAFATRLAVEYRNTFKRDVFIDLVGYRRHGHNEADEPSATQPLMYQKI 471 (929)
T ss_pred cHHHhcCccCHHHHheecCCCEEEECCCCHHHHHHHHHHHHHHHHhcCCCEEEEEEeccCCCCCCCCCCccCCHHHHHHH
Confidence 9999999999997 9999999999999999999999999999999999999998999999999
Q ss_pred HcCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhhhcCC-CccchhhhhccCCCCcccccccCCCCCChHH
Q 002323 502 RSHPSAFEIYQKKLLESAQVTQEDINRIQEKVNTILNEEFMASKDYVP-KRRDWLSAYWAGFKSPEQVSRIRNTGVKPEI 580 (936)
Q Consensus 502 ~~~~dpl~~y~~~Li~eGilt~eei~~i~~~~~~~l~~a~~~A~~~~p-~~~~~~~~~w~~~~~~~~~~~~~~Tgv~~~~ 580 (936)
++++||+.+|+++|+++|++|++++++|+++++++|++|++.++..++ ... ...|.++.. ..+...++|+++.+.
T Consensus 472 ~~~~dPi~~~~~~Li~~Gv~te~e~~~i~~~~~~~v~~a~~~~~~~~~~~~~---~~~~~~~~~-~~~~~~~~t~v~~~~ 547 (929)
T TIGR00239 472 KKHPTPRKVYADKLVSEGVATEEDVTEMVNLYRDALEAADCVVPSWREMNTA---SFTWSPELN-HEWDEEYPNKVEMKR 547 (929)
T ss_pred HhCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHhhhccCCcccc---ccccccccc-cccccCCCCCCCHHH
Confidence 988999999999999999999999999999999999999999987652 221 225665542 222234589999999
Q ss_pred HHHHHHHhccCCCCCCchhHHHHHHHHH-HHHHhcCCcccHHHHHHHHhhhhhhcCCcEEEecccCCCcccccccceeee
Q 002323 581 LKNVGKAITNLPENFKPHRGVKKVYEQR-AQMIETGEGIDWAVGEALAFATLLVEGNHVRLSGQDVERGTFSHRHSVLHD 659 (936)
Q Consensus 581 l~~i~~~~~~~P~~f~~h~~l~r~l~~R-~~~~~~~~~iDWa~aE~LAfgsLl~eg~~Vrl~GqDv~rGtF~~RHavl~d 659 (936)
|+.|+++++++|++|++||+|+|++++| ++|.++++.+||++||+|||++||.+|++|||+||||+|||||||||||||
T Consensus 548 l~~l~~~~~~~P~~f~~h~~~~k~~~~R~~~~~~g~~~~~~~~A~~~A~~~~l~~~~~V~l~GeDv~rGtFshRHavl~d 627 (929)
T TIGR00239 548 LQELAKRISEVPEGVEMHSRVAKIYFDRTKAMAAGEKLFDWGGAENLAFATLVDDGIPVRLSGEDSERGTFFQRHAVLHD 627 (929)
T ss_pred HHHHHHHhccCCCCccccHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHhcCCCEEEEeeeCCCcccccccccccc
Confidence 9999999999999999999999999999 888876667999999999999999999999999999999999999999999
Q ss_pred cCCCceeecCCCCcccCCCcceEEEccCcchhHHHHHHhhhccCCCCcceeeeccchhhhhhHHHHHHHHHhhhhhhhcC
Q 002323 660 QETGEKYCPLDHVMMNQDEEMFTVSNSSLSEFGVLGFELGYSMENPNSLVLWEAQFGDFANGAQVIFDQFLSSGESKWLR 739 (936)
Q Consensus 660 q~t~~~y~pL~~l~~~~~~g~~rV~nspLSE~avlG~e~G~sl~g~~~LviwEaqFgDF~n~Aq~iidqfi~~~~~kw~~ 739 (936)
|++|..|.||++|. ++||++||+||||||+||+|||||||+.||++|||||+|||||+|+||++|||||+++++||++
T Consensus 628 q~~g~~~~~~~~l~--~~~g~~rV~nsplSE~a~~G~~~G~a~~g~~~l~i~E~qfgDF~~~AQv~~Dq~i~~~~~K~~~ 705 (929)
T TIGR00239 628 QSNGSTYTPLQHLH--NGQGAFRVWNSVLSEESVLGFEYGYATTSPRTLVIWEAQFGDFANGAQVVIDQFISSGEQKWGQ 705 (929)
T ss_pred cccCceeecccchh--hhcCCeeEEcCCccHHHHHHHHHhHHhcCCCCceEEEEeccchhcchHHHHHHHHHHHHHHhcC
Confidence 99999999999999 8999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccEEEcCccCCCCCccccCchhhhhhhcCCCCCCcccCCCchhhhhccccceEEEEcCCHHHHHHHHHHHHhcCCCCc
Q 002323 740 QTGLVVLLPHGYDGQGPEHSSARLERFLQMSDDNPFVIPEMDPTLRKQIQECNWQIVNVTTPANYFHVLRRQIHRGFRKP 819 (936)
Q Consensus 740 ~s~lv~~lPhG~~G~GpeHSs~RiERfLQl~~~~~~~~~~~pg~~~~~~~~~N~~Vv~pstpa~~fhlLrrq~~r~~~~P 819 (936)
+|||||++||||+|+||+|||+|+|||||||.+ | ||+||+||||+|||||||||+.|+++||
T Consensus 706 ~sglv~~~p~G~~g~g~~hsS~~~E~~lql~~~--------~----------gl~Vv~pstpad~~~lLrrqa~r~~~~P 767 (929)
T TIGR00239 706 MSGLVMLLPHGYEGQGPEHSSGRLERFLQLAAE--------Q----------NMQVCVPTTPAQVFHILRRQALRGMRRP 767 (929)
T ss_pred ccCeEEEecCcCCCCCchhhccCHHHHHHHhCC--------C----------CCEEEecCCHHHHHHHHHHHHHhCCCCC
Confidence 999999999999999999999999999999987 2 6999999999999999999999999999
Q ss_pred EEEEccccccCCCCCCCCcccccccCCCCCCCCCCCceeEeecCCCC--CCCCCCCccEEEEeCchhHHHHHHhhcc-cC
Q 002323 820 LIVISPKNLLRHKDCKSNLSEFDDVQGHPGFDKQGTRFKRLIKDQNG--HSDLEEGIRRLVLCSGKVFITSLMKGGR-SA 896 (936)
Q Consensus 820 li~~~pK~Llr~~~~~S~l~ef~~~~~~~~~~~pg~~F~~vi~d~~~--~~~~~~~v~rvilcsGkvyydL~~~r~~-~~ 896 (936)
||||+||+|||++.|+|+++||.+ +.|+++|+|... ...++++|+|||+|||||||||.++|.+ .+
T Consensus 768 vi~~~~K~L~r~~~a~S~~~e~~~-----------~~f~~~i~~~~~~~~~~~~~~v~~vv~~sg~v~~~l~~~~~~~~~ 836 (929)
T TIGR00239 768 LVVMSPKSLLRHPLAVSSLEELAE-----------GTFQPVIGEIEESGLSLDPEGVKRLVLCSGKVYYDLHEQRRKNGQ 836 (929)
T ss_pred EEEeccHhhhcCccccCccccCCC-----------CCcccccccccccccccCccCCcEEEEECchHHHHHHHHHHhcCC
Confidence 999999999999999999999976 779999988532 1235679999999999999999998865 34
Q ss_pred Cce
Q 002323 897 VQV 899 (936)
Q Consensus 897 ~~~ 899 (936)
..|
T Consensus 837 ~~v 839 (929)
T TIGR00239 837 KDV 839 (929)
T ss_pred CCE
Confidence 444
No 5
>PRK09404 sucA 2-oxoglutarate dehydrogenase E1 component; Reviewed
Probab=100.00 E-value=1.3e-207 Score=1856.89 Aligned_cols=786 Identities=53% Similarity=0.873 Sum_probs=725.2
Q ss_pred CCCCCCCCCHHHHHHHHHHHhhCCCCCCHHHHHHHhhccCC--C---------CCCCCC--Ch--hhHHHHHHHHHHHHH
Q 002323 63 TDSFLDGTSSVYLEELQRAWEADPNSVDESWDNFFRNFVGQ--A---------ATSPGI--SG--QTIQESMRLLLLVRA 127 (936)
Q Consensus 63 ~~s~l~g~Na~YIEelY~~y~~DP~SVd~sWr~~F~~l~~~--~---------~~~~~~--~~--~~~~~~~~v~~lI~a 127 (936)
..+|+++.|+.|||+||++|++||+|||++|+.||+++.+. . +..+.. .. ....+++++.+||+|
T Consensus 10 ~~~~~~~~n~~yie~ly~~~~~dp~sV~~sw~~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~Li~a 89 (924)
T PRK09404 10 DSSFLFGANAAYIEELYEQYLKDPDSVDEEWRAFFDGLPGVAPDVAHSAVRESFRRLAKPARVSSAVSDPQVKVLQLINA 89 (924)
T ss_pred hcccCCCCCHHHHHHHHHHHhhChhhcCHHHHHHHHhccccccccccchhhhhhhhcccccccchhhhhHHHHHHHHHHH
Confidence 45899999999999999999999999999999999988411 1 000000 00 112357899999999
Q ss_pred HhhcCccccccCCCCCCCCCCCCCCCccccCCCcccccceeecCcccccccccCCCCCcCHHHHHHHHHHHhcCCccccc
Q 002323 128 YQVNGHMKAKLDPLGLEEREIPEDLDPALYGFTEADLDREFFIGVWRMAGFLSENRPVQTLRSILTRLEQAYCGSIGYEY 207 (936)
Q Consensus 128 yr~~GH~~A~lDPL~~~~~~~~~~L~~~~~gl~~~dl~~~~~~~~~~~~~~~~~~~~~~tl~ei~~~L~~~YCg~ig~E~ 207 (936)
||.+||+.|+||||++..+...++|+|++|||+++||++.|.++. +.. +...+||+||+++|+++|||+||+||
T Consensus 90 yR~~GHl~A~lDPL~~~~~~~~~~L~~~~~gl~~~dl~~~~~~~~-----~~~-~~~~~~l~eii~~L~~~Ycg~ig~E~ 163 (924)
T PRK09404 90 YRFRGHLAANLDPLGLWKRPDVPELDPAFYGLTEADLDRTFNTGS-----LAL-GKETATLREIIEALKKTYCGSIGVEY 163 (924)
T ss_pred HHHhCchheecCCCCCccCCCCccCChhhcCCChHHcCCccccCc-----ccc-CCCCCcHHHHHHHHHHHhcccHhhee
Confidence 999999999999999855667789999999999999999998752 211 33457999999999999999999999
Q ss_pred cccCCHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccCCcchhhhhHHHHHHHHhhCCC
Q 002323 208 MHIADRDQCNWLRDKIETPTPMQYNRQRREVILDRLIWSTQFENFLATKWTTAKRFGLEGGETLIPGMKEMFDRAADLGV 287 (936)
Q Consensus 208 ~hi~~~e~r~Wl~~~iE~~~~~~ls~e~~~~il~~M~~ar~fE~fl~~k~~~~KrfgleG~Eali~gl~~li~~A~~~Gv 287 (936)
|||.|.++|+||++|||+... .+++|++++||++|+++|.||+||+++|+++||||++|+|+++||+.+++++|+++|+
T Consensus 164 ~hi~~~~er~Wl~~~iE~~~~-~~s~e~~~~il~~m~~~r~fE~fl~~~f~~~Krf~~eG~Ea~i~gl~~li~~a~~lg~ 242 (924)
T PRK09404 164 MHISDPEERRWLQQRIESGRP-SFSAEEKKAILERLTAAEGFERFLHTKFVGQKRFSLEGGESLIPMLDEIIRRAGKLGV 242 (924)
T ss_pred ccCCCHHHHHHHHHHHhCCCC-CCCHHHHHHHHHHHHHHHHHHHHHHHHhccCCcccccchhhHHHHHHHHHHHHHhCCC
Confidence 999999999999999997655 8999999999999999999999999999999999999999999999999999999999
Q ss_pred CcEEecCCCCchHHHHHhhcCCCHHHHHHhhcCCCCCCCCCCCccCCCCcccccccccCCCCCCCceeeeeeccccCCCc
Q 002323 288 ESIVIGMPHRGRLNVLGNVVRKPLRQIFSEFSGGTKPVDEDGLYTGTGDVKYHLGTSYDRPTRGGKRIHLSLVANPSHLE 367 (936)
Q Consensus 288 ~DivigM~HRgrlnvLa~vlg~p~~~ifaEf~G~~~~~~~G~~~ggsGDVkyHlG~s~~~~~~~g~~I~lsl~~NPSHLe 367 (936)
+|+|+||+||||+|+|+|++|+|+.+||+||+|+...... .|+||||||+|++.++.. .|+.+|+++++||||||
T Consensus 243 ~D~vigmaHRgrlnvLa~v~G~~~~~ifaEf~Gk~~~~~~----~~~GdvkyHlG~~~~~~g-~gg~mhi~l~~npShle 317 (924)
T PRK09404 243 KEIVIGMAHRGRLNVLVNVLGKPPRDLFAEFEGKHGPDEV----LGSGDVKYHLGFSSDRET-DGGEVHLSLAFNPSHLE 317 (924)
T ss_pred CCEEEecCcCchHHHHHHhcCCCHHHHHHHHcCCCCCCCC----CCCCCcccccCccccccC-CCCeeEeeccCCccccc
Confidence 9999999999999999999999999999999998621111 357999999999987655 35679999999999999
Q ss_pred cccceeechhHHHHHhcCC-CCCCceEEEEEecCcccCCCchHHHhhhccCCCCCccccEEEEEEeCCcccccCCCCCCC
Q 002323 368 AVDPVVVGKTRAKQYYSHD-VDRTKNMGVLIHGDGSFAGQGVVYETLHLSALPNYTTGGTIHIVVNNQVAFTTDPRAGRS 446 (936)
Q Consensus 368 av~PVa~G~ArA~q~~~~d-~~~~~~v~v~~hGDgA~sGQGvv~EtLNlA~LP~Y~~GGtIhIV~NNQigfTT~~~~~rs 446 (936)
+|+|||+|+|||+|+++++ .++++.|+|++||||||+|||+||||||||.|++|.||||||||+||||||||+++++|+
T Consensus 318 av~Pva~G~A~A~q~~~~~~~~~~~~v~v~~~GDgA~agqG~v~EalNlA~l~~lp~ggvIfvveNNq~g~tT~~~~~~s 397 (924)
T PRK09404 318 IVNPVVEGSVRARQDRRGDGQDRKKVLPILIHGDAAFAGQGVVAETLNLSQLRGYRTGGTIHIVINNQIGFTTSPPDDRS 397 (924)
T ss_pred cccCeehhHHHHHHHhcCCcccccceEEEEEecCccccCCChHHHHHHHHHhcCCCCCCEEEEEEeCCEEEeeCHHHhcc
Confidence 9999999999999999877 567789999999999998899999999999999999999999999999999999999999
Q ss_pred cchhhH------------------HHHHHHHHHHHHHHccCCCEEEEEEeeecCCCCCCCCCCCCCHHHHHHHHcCCCHH
Q 002323 447 SQYCTD------------------AVVHVCELAAEWRQKFHSDVVVDLVCYRRFGHNEIDEPSFTQPKMYQVIRSHPSAF 508 (936)
Q Consensus 447 s~y~tD------------------AV~~a~~~A~e~rr~f~~pvlIdlv~YRr~GHne~Ddp~ytqp~~y~~i~~~~dpl 508 (936)
+.||+| ||++|+++|++|||+|+||||||++|||++||||+|+|.||+|+||+.|++++||+
T Consensus 398 ~~~~sd~Ak~~giP~~~VDG~D~~AV~~a~~~A~e~~r~g~gPvlIE~~tYR~~GHne~D~p~yr~p~ey~~~~~~~dpi 477 (924)
T PRK09404 398 TPYCTDVAKMVQAPIFHVNGDDPEAVVFATRLALEYRQKFKKDVVIDLVCYRRHGHNEGDEPSFTQPLMYKKIKKHPTTR 477 (924)
T ss_pred chhHHHHHeecCCcEEEEcCCCHHHHHHHHHHHHHHHHhcCcCEEEEEEEecCCCCCCCCCCcCCCHHHHHHHHhcCCHH
Confidence 999997 99999999999999999999999999999999999999999999999999889999
Q ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhhhcCCCccchhhhhccCCCCcccccccCCCCCChHHHHHHHHHh
Q 002323 509 EIYQKKLLESAQVTQEDINRIQEKVNTILNEEFMASKDYVPKRRDWLSAYWAGFKSPEQVSRIRNTGVKPEILKNVGKAI 588 (936)
Q Consensus 509 ~~y~~~Li~eGilt~eei~~i~~~~~~~l~~a~~~A~~~~p~~~~~~~~~w~~~~~~~~~~~~~~Tgv~~~~l~~i~~~~ 588 (936)
.+|+++|+++|++|++++++|+++++++|++|+++|+++. +.+++...|..+..+. ....++||++.+.|+.+++++
T Consensus 478 ~~~~~~Li~~G~lt~~e~~~i~~~~~~~v~~a~~~A~~~~--~~~~~~~~~~~~~~~~-~~~~~~t~v~~~~l~~~~~~~ 554 (924)
T PRK09404 478 ELYADKLVAEGVITEEEADEMVNEYRDALDAGFEVVKEWR--PADWLAGDWSPYLGHE-WDDPVDTGVPLERLKELAEKL 554 (924)
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHhcC--cccccccccccccccc-cccccCCCCCHHHHHHHHHHh
Confidence 9999999999999999999999999999999999998763 4566778898665433 333568999999999999999
Q ss_pred ccCCCCCCchhHHHHHHHHHHHHHhcCCcccHHHHHHHHhhhhhhcCCcEEEecccCCCcccccccceeeecCCCceeec
Q 002323 589 TNLPENFKPHRGVKKVYEQRAQMIETGEGIDWAVGEALAFATLLVEGNHVRLSGQDVERGTFSHRHSVLHDQETGEKYCP 668 (936)
Q Consensus 589 ~~~P~~f~~h~~l~r~l~~R~~~~~~~~~iDWa~aE~LAfgsLl~eg~~Vrl~GqDv~rGtF~~RHavl~dq~t~~~y~p 668 (936)
+++|++|++||+|+|++++|++|+.+++.|||++||+|||||||.+|++|||+||||+||||||||||||||++|..|.|
T Consensus 555 ~~~P~~f~~h~~~~k~~~~R~~~~~~~~~idw~~Ae~lA~~s~l~~~~~v~l~GeDv~rgtFshRHavl~dq~~gg~~~~ 634 (924)
T PRK09404 555 TTVPEGFKVHPKVKKILEDRREMAEGEKPIDWGMAEALAFASLLDEGYPVRLSGQDSGRGTFSHRHAVLHDQKTGETYIP 634 (924)
T ss_pred ccCCCCCcccHHHHHHHHHHHHHhccCCCcCHHHHHHHHHHHHHhCCCCEEEEeeeCCCCcccccchhccccCCCCEecc
Confidence 99999999999999999999999988788999999999999999999999999999999999999999999999999999
Q ss_pred CCCCcccCCCcceEEEccCcchhHHHHHHhhhccCCCCcceeeeccchhhhhhHHHHHHHHHhhhhhhhcCccccEEEcC
Q 002323 669 LDHVMMNQDEEMFTVSNSSLSEFGVLGFELGYSMENPNSLVLWEAQFGDFANGAQVIFDQFLSSGESKWLRQTGLVVLLP 748 (936)
Q Consensus 669 L~~l~~~~~~g~~rV~nspLSE~avlG~e~G~sl~g~~~LviwEaqFgDF~n~Aq~iidqfi~~~~~kw~~~s~lv~~lP 748 (936)
|++|. ++||++||+||||||+||+|||||||+.|+++|+|||+|||||+|+||++|||||+++++||+++|||||++|
T Consensus 635 ~~~l~--~~~g~~rV~nsplsE~~~~G~~~G~a~~g~~~l~i~E~qfgDF~~~AQ~~~Dq~i~~~~~k~~~~sglv~~~p 712 (924)
T PRK09404 635 LNHLS--EGQASFEVYDSPLSEEAVLGFEYGYSTAEPNTLVIWEAQFGDFANGAQVVIDQFISSGEQKWGRLSGLVMLLP 712 (924)
T ss_pred ccchh--hhcCCceEecCcchHHHHHHHHHHHHhcCCCCceEEEEeccccccchHHHHHHHHHHHHHHhcCccCeEEEec
Confidence 99999 8999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCccccCchhhhhhhcCCCCCCcccCCCchhhhhccccceEEEEcCCHHHHHHHHHHHHhcCCCCcEEEEccccc
Q 002323 749 HGYDGQGPEHSSARLERFLQMSDDNPFVIPEMDPTLRKQIQECNWQIVNVTTPANYFHVLRRQIHRGFRKPLIVISPKNL 828 (936)
Q Consensus 749 hG~~G~GpeHSs~RiERfLQl~~~~~~~~~~~pg~~~~~~~~~N~~Vv~pstpa~~fhlLrrq~~r~~~~Pli~~~pK~L 828 (936)
|||+|+||+|||+|+|||||+|+++ ||+||+||||+|||||||||+.|++|||||||+||+|
T Consensus 713 ~G~~g~g~~hsS~~~E~~l~~~~~~------------------gl~Vv~pstpad~~~lLr~q~~r~~r~Pvv~~~pK~L 774 (924)
T PRK09404 713 HGYEGQGPEHSSARLERFLQLCAED------------------NMQVCNPTTPAQYFHLLRRQALRPFRKPLVVMTPKSL 774 (924)
T ss_pred CcCCCCChhhhccCHHHHHHhCCCC------------------CCEEEecCCHHHHHHHHHHHHhhCCCCCEEEeccHHH
Confidence 9999999999999999999999972 6999999999999999999998889999999999999
Q ss_pred cCCCCCCCCcccccccCCCCCCCCCCCceeEeecCCCCCCCCCCCccEEEEeCchhHHHHHHhhcccC
Q 002323 829 LRHKDCKSNLSEFDDVQGHPGFDKQGTRFKRLIKDQNGHSDLEEGIRRLVLCSGKVFITSLMKGGRSA 896 (936)
Q Consensus 829 lr~~~~~S~l~ef~~~~~~~~~~~pg~~F~~vi~d~~~~~~~~~~v~rvilcsGkvyydL~~~r~~~~ 896 (936)
||++.++|+++||.+ +.|++||+|+. ..++++|+||||||||+||||+++|++.+
T Consensus 775 ~r~~~~~s~~~e~~~-----------~~f~~vi~~~~--~~~~~~v~r~iv~~Gk~~~~~~~a~~~~~ 829 (924)
T PRK09404 775 LRHPLAVSSLEELAE-----------GSFQPVIGDID--ELDPKKVKRVVLCSGKVYYDLLEARRKRG 829 (924)
T ss_pred hCCCCCCCCHHHcCC-----------CCceeeccccc--ccCccceeEEEEEcCHHHHHHHHHHHhCC
Confidence 999999999999986 66999999975 24678999999999999999999998754
No 6
>KOG0451 consensus Predicted 2-oxoglutarate dehydrogenase, E1 subunit [Carbohydrate transport and metabolism]
Probab=100.00 E-value=4.2e-195 Score=1600.55 Aligned_cols=742 Identities=42% Similarity=0.748 Sum_probs=693.6
Q ss_pred HHHHHHHHHHHHHhhcCccccccCCCCCC-CCCCCCCCCccccCCCcccccceeecCcccccccccCCCCCcCHHHHHHH
Q 002323 116 QESMRLLLLVRAYQVNGHMKAKLDPLGLE-EREIPEDLDPALYGFTEADLDREFFIGVWRMAGFLSENRPVQTLRSILTR 194 (936)
Q Consensus 116 ~~~~~v~~lI~ayr~~GH~~A~lDPL~~~-~~~~~~~L~~~~~gl~~~dl~~~~~~~~~~~~~~~~~~~~~~tl~ei~~~ 194 (936)
..+..+.+||+|||.+||+.|++|||.+. +-....+|+|..||+--.| +++..++...+|.|+.+.
T Consensus 51 p~~a~~~rlv~afr~hGhk~A~vnPl~~l~~v~e~qeL~pa~yG~~~t~-------------gLl~~~k~~~sl~~l~~~ 117 (913)
T KOG0451|consen 51 PSQANVYRLVEAFRQHGHKLAAVNPLSILTSVQELQELSPAFYGLQRTD-------------GLLSGPKVAHSLAQLEQL 117 (913)
T ss_pred cccccHHHHHHHHHHhcchhhccCchHhhhccHHHHHhCHHhhcchhhh-------------hhhcCccccccHHHHHHH
Confidence 34667899999999999999999999953 2334567999999974221 345556677899999999
Q ss_pred HHHHhcCCccccccccCCHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccCCcchhhhh
Q 002323 195 LEQAYCGSIGYEYMHIADRDQCNWLRDKIETPTPMQYNRQRREVILDRLIWSTQFENFLATKWTTAKRFGLEGGETLIPG 274 (936)
Q Consensus 195 L~~~YCg~ig~E~~hi~~~e~r~Wl~~~iE~~~~~~ls~e~~~~il~~M~~ar~fE~fl~~k~~~~KrfgleG~Eali~g 274 (936)
|+.+|||++.+||+||.|.|||+||.+++|+.....|.+|++++|-+.|++++.||+||++||++-||||.||.|+|...
T Consensus 118 L~~IYCG~tsiEfs~v~~~eEr~W~a~nFE~l~~e~l~keEr~~i~~Lmlksq~fD~FlatKFpTvKRYGgEGAESM~aF 197 (913)
T KOG0451|consen 118 LKDIYCGSTSIEFSYVEDIEEREWLARNFETLDQEQLGKEERCEIAELMLKSQAFDNFLATKFPTVKRYGGEGAESMLAF 197 (913)
T ss_pred HHhheeCcchhhhhhhccHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhhhHHHHHHhccchhhhhccccHHHHHHH
Confidence 99999999999999999999999999999998778899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhCCCCcEEecCCCCchHHHHHhhcCCCHHHHHHhhcCCCCCCCCCCCccCCCCcccccccccCCCCCCCce
Q 002323 275 MKEMFDRAADLGVESIVIGMPHRGRLNVLGNVVRKPLRQIFSEFSGGTKPVDEDGLYTGTGDVKYHLGTSYDRPTRGGKR 354 (936)
Q Consensus 275 l~~li~~A~~~Gv~DivigM~HRgrlnvLa~vlg~p~~~ifaEf~G~~~~~~~G~~~ggsGDVkyHlG~s~~~~~~~g~~ 354 (936)
+.++++-++..+++++||||+||||+|+|+-+|..|+..||.++.|.++.+..- ...|||..|+-.|.+. ...++.
T Consensus 198 F~eLl~~sa~~~ie~viigmpHRGRlnLlt~Ll~fpP~~mFRK~~G~sEFpE~~---~A~gDVlSHl~sS~dy-kg~~~~ 273 (913)
T KOG0451|consen 198 FWELLRDSAQANIEHVIIGMPHRGRLNLLTALLNFPPAKMFRKLSGASEFPEDI---EAMGDVLSHLHSSEDY-KGLGKK 273 (913)
T ss_pred HHHHHHHHHhcCcceEEEeccccCcchHHHHHhcCCHHHHHHHhcCcccCchhh---hHHHHHHHHhhhhhhh-cccCCc
Confidence 999999999999999999999999999999999999999999999999887642 3578999999766663 445678
Q ss_pred eeeeeccccCCCccccceeechhHHHHHhcCCC---------CCCceEEEEEecCcccCCCchHHHhhhccCCCCCcccc
Q 002323 355 IHLSLVANPSHLEAVDPVVVGKTRAKQYYSHDV---------DRTKNMGVLIHGDGSFAGQGVVYETLHLSALPNYTTGG 425 (936)
Q Consensus 355 I~lsl~~NPSHLeav~PVa~G~ArA~q~~~~d~---------~~~~~v~v~~hGDgA~sGQGvv~EtLNlA~LP~Y~~GG 425 (936)
+|++|+|||||||++||||+|++|++|..+++. .++.++.|++||||||+|||+|+|++|||++|+|++||
T Consensus 274 lhvtMlpNPSHLEAvNPVAmGKtR~rqqsr~~Gdyspd~sa~~Gd~Vlnv~vHGDaaF~GQGiv~E~~~ls~~PHFrvGG 353 (913)
T KOG0451|consen 274 LHVTMLPNPSHLEAVNPVAMGKTRSRQQSRGEGDYSPDSSAPFGDHVLNVIVHGDAAFAGQGIVQECLNLSYVPHFRVGG 353 (913)
T ss_pred eEEEecCChhhhhccCchhhcchhHHHHhhcCCCCCCCCcCCCCCceEEEEEecchhhccCcccHHHHhhccCCceeecc
Confidence 999999999999999999999999999876542 36789999999999999999999999999999999999
Q ss_pred EEEEEEeCCcccccCCCCCCCcchhhH------------------HHHHHHHHHHHHHHccCCCEEEEEEeeecCCCCCC
Q 002323 426 TIHIVVNNQVAFTTDPRAGRSSQYCTD------------------AVVHVCELAAEWRQKFHSDVVVDLVCYRRFGHNEI 487 (936)
Q Consensus 426 tIhIV~NNQigfTT~~~~~rss~y~tD------------------AV~~a~~~A~e~rr~f~~pvlIdlv~YRr~GHne~ 487 (936)
+||+|+|||+|||||.+..|||.||+| +|++|+++|++|+|+|+||||||++|||++||||.
T Consensus 354 svHLivNNQvgfTtp~~rGRSs~ycsDiaK~~~~pviHVNGD~PEevvraTrLAf~Yqr~FRKDvfIdL~CfRrwgHnel 433 (913)
T KOG0451|consen 354 SVHLIVNNQVGFTTPGDRGRSSAYCSDIAKSIQAPVIHVNGDDPEEVVRATRLAFRYQREFRKDVFIDLNCFRRWGHNEL 433 (913)
T ss_pred eEEEEecccccccCcccccccchhhhHHHHHhCCCEEEeCCCCHHHHHHHHHHHHHHHHHhhhhheeehHHHHHhccccc
Confidence 999999999999999999999999998 99999999999999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHcCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhhhcCCCccchhhhhccCCCCccc
Q 002323 488 DEPSFTQPKMYQVIRSHPSAFEIYQKKLLESAQVTQEDINRIQEKVNTILNEEFMASKDYVPKRRDWLSAYWAGFKSPEQ 567 (936)
Q Consensus 488 Ddp~ytqp~~y~~i~~~~dpl~~y~~~Li~eGilt~eei~~i~~~~~~~l~~a~~~A~~~~p~~~~~~~~~w~~~~~~~~ 567 (936)
|||.||+|.||+.++.+.++.+.|.++|+++|++|+++++++++++.+.|.+.++.+..+.|.+. .+...|.++..++.
T Consensus 434 ddp~ftspvmyk~v~aReSvPdlya~~L~~eg~~tee~vkE~~~~y~~~Ln~eL~~~~~y~Pp~~-~~~~~W~gf~qapk 512 (913)
T KOG0451|consen 434 DDPTFTSPVMYKEVEARESVPDLYAQQLAKEGVLTEEKVKEMRDEYMKYLNEELALAPAYQPPPS-YFEKQWTGFQQAPK 512 (913)
T ss_pred cCccccChhHHHHHHhhhcccHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHhcCCccCCCch-hhHHhhhhhccChh
Confidence 99999999999999988999999999999999999999999999999999999999998876433 47889999988777
Q ss_pred ccccCCCCCChHHHHHHHHHhccCCCCCCchhHHHH-HHHHHHHHHhcCCcccHHHHHHHHhhhhhhcCCcEEEecccCC
Q 002323 568 VSRIRNTGVKPEILKNVGKAITNLPENFKPHRGVKK-VYEQRAQMIETGEGIDWAVGEALAFATLLVEGNHVRLSGQDVE 646 (936)
Q Consensus 568 ~~~~~~Tgv~~~~l~~i~~~~~~~P~~f~~h~~l~r-~l~~R~~~~~~~~~iDWa~aE~LAfgsLl~eg~~Vrl~GqDv~ 646 (936)
..+.|+||++.+.|..||...+++|++|++|+.|-| .++.|.+.++.|.+|||||||+||+||||.+|++||||||||+
T Consensus 513 ~it~WdTGv~~dLLrfiG~~SV~vPedf~~H~HLlKtHv~sRm~Km~~G~kiDWaTAEAlA~GSll~qG~nVRiSGqDVG 592 (913)
T KOG0451|consen 513 EITYWDTGVDYDLLRFIGQQSVTVPEDFNIHPHLLKTHVNSRMKKMENGVKIDWATAEALAIGSLLYQGHNVRISGQDVG 592 (913)
T ss_pred hhcccccCcchHHHHHhccCceecchhccccHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHhccCceeeeccccC
Confidence 777899999999999999999999999999999988 5899999999999999999999999999999999999999999
Q ss_pred CcccccccceeeecCCCceeecCCCCcccCCCcceEEEccCcchhHHHHHHhhhccCCCCcceeeeccchhhhhhHHHHH
Q 002323 647 RGTFSHRHSVLHDQETGEKYCPLDHVMMNQDEEMFTVSNSSLSEFGVLGFELGYSMENPNSLVLWEAQFGDFANGAQVIF 726 (936)
Q Consensus 647 rGtF~~RHavl~dq~t~~~y~pL~~l~~~~~~g~~rV~nspLSE~avlG~e~G~sl~g~~~LviwEaqFgDF~n~Aq~ii 726 (936)
||||+|||||++||+|.+.|+||+++.+ ...|..+|.||+|||.||||||||+|+++|+.|+|||||||||+||||+||
T Consensus 593 RGTFshRHAM~VdQ~Td~~~IPLN~m~~-~qkg~LEvans~LSEEAvLGFEyGmsienP~~L~iWEAQFGDFfNGAQIIi 671 (913)
T KOG0451|consen 593 RGTFSHRHAMLVDQQTDEMFIPLNSMEG-GQKGKLEVANSILSEEAVLGFEYGMSIENPNNLIIWEAQFGDFFNGAQIII 671 (913)
T ss_pred cccccccceeeeeccccceeeeccccCC-CcCCeeEeccccccHhhhhhhhcccccCCcccceeehhhhcccccCceEEE
Confidence 9999999999999999999999999985 556899999999999999999999999999999999999999999999999
Q ss_pred HHHHhhhhhhhcCccccEEEcCccCCCCCccccCchhhhhhhcCCCCCCcccCCCchhhhhccccceEEEEcCCHHHHHH
Q 002323 727 DQFLSSGESKWLRQTGLVVLLPHGYDGQGPEHSSARLERFLQMSDDNPFVIPEMDPTLRKQIQECNWQIVNVTTPANYFH 806 (936)
Q Consensus 727 dqfi~~~~~kw~~~s~lv~~lPhG~~G~GpeHSs~RiERfLQl~~~~~~~~~~~pg~~~~~~~~~N~~Vv~pstpa~~fh 806 (936)
|.||++||+||..+|||||+|||||+|.||||||||||||||||+..+.- .+| +.+||.||+|||||||||
T Consensus 672 DTFi~sgE~KWl~ssglvmLLPHGyDGAgpeHSSCRiERFLQlCDS~E~~---vDG------d~VNm~vvnPTTpAQYfH 742 (913)
T KOG0451|consen 672 DTFIVSGETKWLESSGLVMLLPHGYDGAGPEHSSCRIERFLQLCDSKETS---VDG------DSVNMHVVNPTTPAQYFH 742 (913)
T ss_pred eeeecccchhhhhhCCeEEEccCCcCCCCCccchhhHHHHHHHhcccccc---CCC------cceeEEEeCCCCHHHHHH
Confidence 99999999999999999999999999999999999999999999986543 334 678999999999999999
Q ss_pred HHHHHHhcCCCCcEEEEccccccCCCCCCCCcccccccCCCCCCCCCCCceeEeecCCCCCCCCCCCccEEEEeCchhHH
Q 002323 807 VLRRQIHRGFRKPLIVISPKNLLRHKDCKSNLSEFDDVQGHPGFDKQGTRFKRLIKDQNGHSDLEEGIRRLVLCSGKVFI 886 (936)
Q Consensus 807 lLrrq~~r~~~~Pli~~~pK~Llr~~~~~S~l~ef~~~~~~~~~~~pg~~F~~vi~d~~~~~~~~~~v~rvilcsGkvyy 886 (936)
|||||+.|++||||||..||.|||+|.|+|+++||. |||.|++||+|.. .+|++||+|||||||+||
T Consensus 743 lLRRQ~vrNfRKPLiVv~PK~LLRlPaA~ST~~ef~----------PGTtf~nVigd~~---~~p~kvkkvifcSGKH~y 809 (913)
T KOG0451|consen 743 LLRRQLVRNFRKPLIVVAPKTLLRLPAATSTHEEFQ----------PGTTFHNVIGDTI---AKPEKVKKVIFCSGKHYY 809 (913)
T ss_pred HHHHHHHHhccCceEEechHHHhhCcchhhhHhhcC----------CCccccccccccc---cChhHheEEEEecCcchh
Confidence 999999999999999999999999999999999998 7999999999973 589999999999999999
Q ss_pred HHHHhhcccCCc
Q 002323 887 TSLMKGGRSAVQ 898 (936)
Q Consensus 887 dL~~~r~~~~~~ 898 (936)
.|.++|++++.+
T Consensus 810 ~l~k~Re~rgak 821 (913)
T KOG0451|consen 810 TLAKEREKRGAK 821 (913)
T ss_pred hHHHHHHhcccc
Confidence 999999997765
No 7
>cd02016 TPP_E1_OGDC_like Thiamine pyrophosphate (TPP) family, E1 of OGDC-like subfamily, TPP-binding module; composed of proteins similar to the E1 component of the 2-oxoglutarate dehydrogenase multienzyme complex (OGDC). OGDC catalyzes the oxidative decarboxylation of 2-oxoglutarate to succinyl-CoA and carbon dioxide, a key reaction of the tricarboxylic acid cycle.
Probab=100.00 E-value=2e-73 Score=609.30 Aligned_cols=247 Identities=70% Similarity=1.114 Sum_probs=233.9
Q ss_pred HHHHHHHHHhhccccccCCcchhhhhHHHHHHHHhhCCCCcEEecCCCCchHHHHHhhcCCCHHHHHHhhcCCCCCCCCC
Q 002323 249 FENFLATKWTTAKRFGLEGGETLIPGMKEMFDRAADLGVESIVIGMPHRGRLNVLGNVVRKPLRQIFSEFSGGTKPVDED 328 (936)
Q Consensus 249 fE~fl~~k~~~~KrfgleG~Eali~gl~~li~~A~~~Gv~DivigM~HRgrlnvLa~vlg~p~~~ifaEf~G~~~~~~~G 328 (936)
||+||++||+++||||+||+|+++|+++.+++.+++.|++|||+||+||||+|+|+|++|+|+++||+||+|+.+.+..
T Consensus 1 ~e~f~~~~f~~~krfs~eG~Es~~~~l~~~~~~~~~~~~~d~v~gm~HRgrln~L~~~lg~~~~~if~ef~g~~~~~~~- 79 (265)
T cd02016 1 FEQFLATKFPGQKRFGLEGAESLIPALDELIDRAAELGVEEVVIGMAHRGRLNVLANVLGKPLEQIFSEFEGKSEFPED- 79 (265)
T ss_pred ChhhHHHhcCCCeEEEecCHHHHHHHHHHHHHHHHhcCCCeEEeccCcCCcHHHHHHHhCCCHHHHHHHhhCCCCCCCC-
Confidence 7999999999999999999999999999999999999999999999999999999999999999999999998763321
Q ss_pred CCccCCCCcccccccccCCCCCCCceeeeeeccccCCCccccceeechhHHHHHhcCCCCCCceEEEEEecCcccCCCch
Q 002323 329 GLYTGTGDVKYHLGTSYDRPTRGGKRIHLSLVANPSHLEAVDPVVVGKTRAKQYYSHDVDRTKNMGVLIHGDGSFAGQGV 408 (936)
Q Consensus 329 ~~~ggsGDVkyHlG~s~~~~~~~g~~I~lsl~~NPSHLeav~PVa~G~ArA~q~~~~d~~~~~~v~v~~hGDgA~sGQGv 408 (936)
+.++||||||+|++.++.+.+|+.|+++|++||||||+++|+|+|+|+|+|+++++..+++.|+|++||||||+|||+
T Consensus 80 --~~~~gdv~yHlg~~~~~~~~~~~~~~~~l~~npS~l~~~~pva~G~A~A~k~~~~~~~~~~~v~v~~~GDgA~~~qG~ 157 (265)
T cd02016 80 --DEGSGDVKYHLGYSSDRKTPSGKKVHLSLAPNPSHLEAVNPVVMGKTRAKQDYRGDGERDKVLPILIHGDAAFAGQGV 157 (265)
T ss_pred --CCCCCCcCcCCccCcccccCCCCeeEEEecCCCcccccccCeehhHHHHHHHhcCCccCCCeEEEEEecCccccCCCh
Confidence 135799999999998887777888999999999999999999999999999998665566799999999999988999
Q ss_pred HHHhhhccCCCCCccccEEEEEEeCCcccccCCCCCCCcchhhH------------------HHHHHHHHHHHHHHccCC
Q 002323 409 VYETLHLSALPNYTTGGTIHIVVNNQVAFTTDPRAGRSSQYCTD------------------AVVHVCELAAEWRQKFHS 470 (936)
Q Consensus 409 v~EtLNlA~LP~Y~~GGtIhIV~NNQigfTT~~~~~rss~y~tD------------------AV~~a~~~A~e~rr~f~~ 470 (936)
||||||||+||+|.|||+||||+||||||||++++++++.|++| ||++|+++|++|||+|+|
T Consensus 158 ~~EalNlA~l~~lp~gg~ifvveNNq~g~sT~~~~~~~~~~~~~~a~~~gip~~~VdG~D~~aV~~a~~~A~~~~r~g~g 237 (265)
T cd02016 158 VYETLNLSNLPGYTTGGTIHIVVNNQIGFTTDPRDSRSSPYCTDVAKMIGAPIFHVNGDDPEAVVRATRLALEYRQKFKK 237 (265)
T ss_pred HHHHHHHHHhcCCCCCCEEEEEEeCCEEEEecHHHhcccccHHHHHeecCCCEEEEcCCCHHHHHHHHHHHHHHHHhcCC
Confidence 99999999999999999999999999999999999999999987 999999999999999999
Q ss_pred CEEEEEEeeecCCCCCCCCCCCCCHHHH
Q 002323 471 DVVVDLVCYRRFGHNEIDEPSFTQPKMY 498 (936)
Q Consensus 471 pvlIdlv~YRr~GHne~Ddp~ytqp~~y 498 (936)
|+|||++|||++||||+|+|+||||.||
T Consensus 238 p~lIe~~tYR~~GHse~D~p~~t~p~my 265 (265)
T cd02016 238 DVVIDLVCYRRHGHNELDEPSFTQPLMY 265 (265)
T ss_pred CEEEEEEEecCCCCCCcCCccccCCCcC
Confidence 9999999999999999999999999998
No 8
>COG1071 AcoA Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, alpha subunit [Energy production and conversion]
Probab=100.00 E-value=1.6e-58 Score=509.30 Aligned_cols=298 Identities=19% Similarity=0.297 Sum_probs=268.5
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhccccc----cCCcchhhhhHHHHHHHHhhCCCCcEEecCCCCchHHHHH
Q 002323 229 MQYNRQRREVILDRLIWSTQFENFLATKWTTAKRFG----LEGGETLIPGMKEMFDRAADLGVESIVIGMPHRGRLNVLG 304 (936)
Q Consensus 229 ~~ls~e~~~~il~~M~~ar~fE~fl~~k~~~~Krfg----leG~Eali~gl~~li~~A~~~Gv~DivigM~HRgrlnvLa 304 (936)
..+++++++++|++|+++|.||+++..+++++|..| ..|+|+..+|+...++. -+||+++ +||+|+.+|+
T Consensus 22 ~~~~~~~l~~~y~~M~l~R~fd~k~~~l~r~G~i~gf~~~~~GqEA~~vg~~~aL~~-----~~D~i~~-~YR~h~~~l~ 95 (358)
T COG1071 22 AALSKEELLELYRLMLLIRRFDEKMLQLQRQGKIGGFYHLYIGQEAVQVGAAAALRP-----GEDWIFP-TYRDHGHLLA 95 (358)
T ss_pred ccCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccCcCCcccHHHHHHHHHHhcCC-----CCCEeec-ccCcccccee
Confidence 468999999999999999999999999999999654 79999999998766532 2599998 9999999999
Q ss_pred hhcCCCHHHHHHhhcCCCCCCCCCCCccCCCCcccccccccCCCCCCCceeeeeeccccCCCccccceeechhHHHHHhc
Q 002323 305 NVVRKPLRQIFSEFSGGTKPVDEDGLYTGTGDVKYHLGTSYDRPTRGGKRIHLSLVANPSHLEAVDPVVVGKTRAKQYYS 384 (936)
Q Consensus 305 ~vlg~p~~~ifaEf~G~~~~~~~G~~~ggsGDVkyHlG~s~~~~~~~g~~I~lsl~~NPSHLeav~PVa~G~ArA~q~~~ 384 (936)
+ |+|+.+||+|++|+.+++|+|+ +|+ +|++ +...++.+++.| +++|.|+|+|+|+|.|+++
T Consensus 96 ~--G~~~~~~~a~~~G~~~g~~kGr--~~~----~h~~-~~~~~~~~~~~i----------Vg~Q~~~AaG~A~a~k~~~ 156 (358)
T COG1071 96 R--GVPLKEIMAELLGKATGPCKGR--GGS----MHYS-DKEKGFLGGSGI----------VGTQIPLAAGAALALKYRG 156 (358)
T ss_pred c--CCCHHHHHHHHhccccCCCCCC--CCc----cccc-ccccccCCCCce----------ecccccHHHHHHHHHHHhC
Confidence 9 9999999999999999999987 677 9995 556666666555 9999999999999999998
Q ss_pred CCCCCCceEEEEEecCcccCCCchHHHhhhcc---CCCCCccccEEEEEEeCCcccccCCCCCCCcchhh----------
Q 002323 385 HDVDRTKNMGVLIHGDGSFAGQGVVYETLHLS---ALPNYTTGGTIHIVVNNQVAFTTDPRAGRSSQYCT---------- 451 (936)
Q Consensus 385 ~d~~~~~~v~v~~hGDgA~sGQGvv~EtLNlA---~LP~Y~~GGtIhIV~NNQigfTT~~~~~rss~y~t---------- 451 (936)
++ +.|++|++||||++ ||.|||+|||| +|| +||+|+|||||||+|...+......+
T Consensus 157 ~~----~~Va~~~~GDGat~-qG~FhEalN~A~v~klP------vvf~ieNN~yAiSvp~~~q~~~~~~~~ra~aygipg 225 (358)
T COG1071 157 TK----DGVAVAFFGDGATN-QGDFHEALNFAAVWKLP------VVFVIENNQYAISVPRSRQTAAEIIAARAAAYGIPG 225 (358)
T ss_pred CC----CcEEEEEecCCccc-cchHHHHHHHHHHhcCC------EEEEEecCCceeecchhhcccchhHHhhhhccCCCe
Confidence 55 25999999999999 99999999999 999 99999999999999877555443222
Q ss_pred ---H-----HHHHHHHHHHHHHHccCCCEEEEEEeeecCCCCCCCCCC-CCCHHHHHHHHcCCCHHHHHHHHHHHcCCCC
Q 002323 452 ---D-----AVVHVCELAAEWRQKFHSDVVVDLVCYRRFGHNEIDEPS-FTQPKMYQVIRSHPSAFEIYQKKLLESAQVT 522 (936)
Q Consensus 452 ---D-----AV~~a~~~A~e~rr~f~~pvlIdlv~YRr~GHne~Ddp~-ytqp~~y~~i~~~~dpl~~y~~~Li~eGilt 522 (936)
| |||.|++.|++++|++++|+|||++|||..||+++|+|+ ||+++|.+.|++ +||+.+++++|++.|++|
T Consensus 226 v~VDG~D~~avy~~~~~A~e~AR~g~GPtLIE~~tYR~~~HS~sDd~~~YRskeE~~~~~~-~DPi~r~~~~L~~~g~~s 304 (358)
T COG1071 226 VRVDGNDVLAVYEAAKEAVERARAGEGPTLIEAVTYRYGGHSTSDDPSKYRSKEEVEEWKK-RDPIVRLRKYLIEAGILS 304 (358)
T ss_pred EEECCcCHHHHHHHHHHHHHHHHcCCCCEEEEEEEeecCCCCCCCCccccCCHHHHHHHhc-cChHHHHHHHHHHcCCCC
Confidence 2 999999999999999999999999999999999999965 999999999995 999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcC-CCccchhhhhccCCC
Q 002323 523 QEDINRIQEKVNTILNEEFMASKDYV-PKRRDWLSAYWAGFK 563 (936)
Q Consensus 523 ~eei~~i~~~~~~~l~~a~~~A~~~~-p~~~~~~~~~w~~~~ 563 (936)
++++++|+++++++|++|+++|++.| |++.++++++|.++.
T Consensus 305 ee~~~~i~~e~~~~V~ea~e~a~~~p~P~~~~~~~~Vy~~~~ 346 (358)
T COG1071 305 EEELEAIEAEAKAEVDEAVEFAEASPYPDVSELFEDVYAEGP 346 (358)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCCChhHhhhcccccCC
Confidence 99999999999999999999999987 888888999987643
No 9
>PLN02269 Pyruvate dehydrogenase E1 component subunit alpha
Probab=100.00 E-value=3.3e-56 Score=497.48 Aligned_cols=294 Identities=20% Similarity=0.353 Sum_probs=265.7
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhccccc----cCCcchhhhhHHHHHHHHhhCCCCcEEecCCCCchHHHHH
Q 002323 229 MQYNRQRREVILDRLIWSTQFENFLATKWTTAKRFG----LEGGETLIPGMKEMFDRAADLGVESIVIGMPHRGRLNVLG 304 (936)
Q Consensus 229 ~~ls~e~~~~il~~M~~ar~fE~fl~~k~~~~Krfg----leG~Eali~gl~~li~~A~~~Gv~DivigM~HRgrlnvLa 304 (936)
..+++|+++++|+.|+++|.||+.+..+|+++|..| +.|+|++.+|+...++ .+|++++ +||+|+.+|+
T Consensus 25 ~~~~~~~ll~~yr~M~~~R~~e~~~~~l~~~g~i~g~~~~~~GqEA~~vg~~~aL~------~~D~~~~-~yR~hg~~la 97 (362)
T PLN02269 25 VETSKQELVDFFRDMYLMRRMEIAADSLYKAKLIRGFCHLYDGQEAVAVGMEAAIT------KEDAIIT-AYRDHCTHLG 97 (362)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccccCCCCChHHHHHHHHHhcC------CCCEEEe-chhhHHHHHH
Confidence 468999999999999999999999999999988533 7999999999877664 4799999 9999999999
Q ss_pred hhcCCCHHHHHHhhcCCCCCCCCCCCccCCCCcccccccccCCCCCCCceeeeeeccccCCCccccceeechhHHHHHhc
Q 002323 305 NVVRKPLRQIFSEFSGGTKPVDEDGLYTGTGDVKYHLGTSYDRPTRGGKRIHLSLVANPSHLEAVDPVVVGKTRAKQYYS 384 (936)
Q Consensus 305 ~vlg~p~~~ifaEf~G~~~~~~~G~~~ggsGDVkyHlG~s~~~~~~~g~~I~lsl~~NPSHLeav~PVa~G~ArA~q~~~ 384 (936)
+ |.++.++|+|++|+.+++++|+ ||| +|++ +.+. ++++..|+||++.|+|+|+|+|.|+++
T Consensus 98 ~--G~~~~~~~ae~~g~~~g~~~Gr--ggs----mH~~-~~~~----------~~~~~~~~vG~~~p~A~G~A~A~k~~~ 158 (362)
T PLN02269 98 R--GGTVLEVFAELMGRKDGCSRGK--GGS----MHFY-KKDA----------NFYGGHGIVGAQVPLGAGLAFAQKYNK 158 (362)
T ss_pred c--CCCHHHHHHHHcCCCCCCCCCC--CCc----cccc-chhc----------CccccCchhhccccHHHHHHHHHHHhC
Confidence 9 9999999999999999999987 777 9995 4443 455667779999999999999999987
Q ss_pred CCCCCCceEEEEEecCcccCCCchHHHhhhcc---CCCCCccccEEEEEEeCCcccccCCCCCC-Ccchhh---------
Q 002323 385 HDVDRTKNMGVLIHGDGSFAGQGVVYETLHLS---ALPNYTTGGTIHIVVNNQVAFTTDPRAGR-SSQYCT--------- 451 (936)
Q Consensus 385 ~d~~~~~~v~v~~hGDgA~sGQGvv~EtLNlA---~LP~Y~~GGtIhIV~NNQigfTT~~~~~r-ss~y~t--------- 451 (936)
.+ .+++|+|||||++ ||.|||+|||| +|| +||||+||||||||+...+. +..++.
T Consensus 159 ~~-----~v~v~~~GDGa~~-eG~~~Ealn~A~~~~lP------vvfvveNN~~aist~~~~~~~~~~~~~~~~~~p~~~ 226 (362)
T PLN02269 159 EE-----NVAFALYGDGAAN-QGQLFEALNIAALWDLP------VIFVCENNHYGMGTAEWRAAKSPAYYKRGDYVPGLK 226 (362)
T ss_pred CC-----CeEEEEECCCCcc-cCHHHHHHHHhhccCcC------EEEEEeCCCEeccCchhhhccchHHHHhhcCCCeEE
Confidence 65 8999999999987 99999999999 999 99999999999999865543 333432
Q ss_pred ----H--HHHHHHHHHHHHHHccCCCEEEEEEeeecCCCCCCCCC-CCCCHHHHHHHHcCCCHHHHHHHHHHHcCCCCHH
Q 002323 452 ----D--AVVHVCELAAEWRQKFHSDVVVDLVCYRRFGHNEIDEP-SFTQPKMYQVIRSHPSAFEIYQKKLLESAQVTQE 524 (936)
Q Consensus 452 ----D--AV~~a~~~A~e~rr~f~~pvlIdlv~YRr~GHne~Ddp-~ytqp~~y~~i~~~~dpl~~y~~~Li~eGilt~e 524 (936)
| ||++|++.|++++|+ ++|+|||++|||++|||++|++ .||+|+|++.|++++||+.+|+++|+++|++|++
T Consensus 227 VDG~D~~av~~a~~~A~~~aR~-~gP~lIe~~tyR~~gHs~~D~~~~YR~~~E~~~~~~~~DPi~~~~~~L~~~g~~te~ 305 (362)
T PLN02269 227 VDGMDVLAVKQACKFAKEHALS-NGPIVLEMDTYRYHGHSMSDPGSTYRTRDEISGVRQERDPIERVRKLLLAHELATEA 305 (362)
T ss_pred ECCCCHHHHHHHHHHHHHHHHh-CCCEEEEEecCcCCCcCCCCCCcccCCHHHHHHHHhCCCHHHHHHHHHHHcCCCCHH
Confidence 2 999999999999999 9999999999999999999987 6999999999987799999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhcC-CCccchhhhhccC
Q 002323 525 DINRIQEKVNTILNEEFMASKDYV-PKRRDWLSAYWAG 561 (936)
Q Consensus 525 ei~~i~~~~~~~l~~a~~~A~~~~-p~~~~~~~~~w~~ 561 (936)
++++++++++++|++++++|++.| |++.+.++++|+.
T Consensus 306 e~~~i~~e~~~~v~~a~~~A~~~p~P~~~~~~~~vy~~ 343 (362)
T PLN02269 306 ELKDIEKEIRKEVDDAVAKAKESPMPDPSELFTNVYVK 343 (362)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHhhcccC
Confidence 999999999999999999999988 8888899999875
No 10
>PF00676 E1_dh: Dehydrogenase E1 component; InterPro: IPR001017 This entry includes a number of dehydrogenases all of which use thiamine pyrophosphate as a cofactor and are members of a multienzyme complex. Pyruvate dehydrogenase (1.2.4.1 from EC), a component of the multienzyme pyruvate dehydrogenase complex; 2-oxoglutarate dehydrogenase (1.2.4.2 from EC), a component of the multienzyme 2-oxoglutarate dehydrogenase which contains multiple copies of three enzymatic components: 2-oxoglutarate dehydrogenase (E1), dihydrolipoamide succinyltransferase (E2) and lipoamide dehydrogenase (E3); and 2-oxoisovalerate dehydrogenase (1.2.4.4 from EC), a component of the multienzyme branched-chain alpha-keto dehydrogenase complex all belong to this family.; GO: 0016624 oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor, 0008152 metabolic process; PDB: 1X7Y_A 1V1M_A 1X7W_A 1OLU_A 2J9F_A 2BEW_A 1V11_A 2BFE_A 1U5B_A 2BEU_A ....
Probab=100.00 E-value=9.6e-56 Score=484.03 Aligned_cols=272 Identities=26% Similarity=0.394 Sum_probs=232.8
Q ss_pred HHHHHHHHHHHHHHHHHhhccccc----cCCcchhhhhHHHHHHHHhhCCCCcEEecCCCCchHHHHHhhcCCCHHHHHH
Q 002323 241 DRLIWSTQFENFLATKWTTAKRFG----LEGGETLIPGMKEMFDRAADLGVESIVIGMPHRGRLNVLGNVVRKPLRQIFS 316 (936)
Q Consensus 241 ~~M~~ar~fE~fl~~k~~~~Krfg----leG~Eali~gl~~li~~A~~~Gv~DivigM~HRgrlnvLa~vlg~p~~~ifa 316 (936)
++|++.+.||+.+..+|..+|++| ..|+|++.+++...+ ..+|++++ +||+|+++|++ |.++.++|+
T Consensus 1 y~~m~~~r~~d~~~~~~~~~~~~g~~~~~~GqEa~~v~~~~~l------~~~D~v~~-~yR~~~~~la~--g~~~~~~~~ 71 (300)
T PF00676_consen 1 YRMMLIRRFEDERARKLQRQGRFGFYHLSAGQEAIQVAAAAAL------RPGDWVFP-YYRDHGHALAR--GIDLEEIFA 71 (300)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTSSSCTT-TTTCHHHHHHHHHHS------CTTSEEEE-CSTTHHHHHHT--TT-HHHHHH
T ss_pred CchHHHHHHHHHHHHHHhhCCCeEEecchHHHHHHHHHHHHhc------cCCCEEEe-cccchhhhhhc--cccccchhH
Confidence 367888888888999999999887 689999988776554 44799998 79999999999 999999999
Q ss_pred hhcCCCCCCCCCCCccCCCCcccccccccCCCCCCCceeeeeeccccCCCccccceeechhHHHHHhcCCCCCCceEEEE
Q 002323 317 EFSGGTKPVDEDGLYTGTGDVKYHLGTSYDRPTRGGKRIHLSLVANPSHLEAVDPVVVGKTRAKQYYSHDVDRTKNMGVL 396 (936)
Q Consensus 317 Ef~G~~~~~~~G~~~ggsGDVkyHlG~s~~~~~~~g~~I~lsl~~NPSHLeav~PVa~G~ArA~q~~~~d~~~~~~v~v~ 396 (936)
|++|+..+. +|+.. +.|.+.. . +++++.+|++++++|+++|.|+|.|+++++ .|+||
T Consensus 72 e~~g~~~g~------~g~~~-~~~~~~~-~----------~~~~~~~~~vg~~~p~a~G~A~a~k~~~~~-----~v~v~ 128 (300)
T PF00676_consen 72 ELLGKAKGH------GGGRH-PLHFSDK-G----------LNILGASSPVGAQVPIAAGVALAIKYRGKD-----GVVVC 128 (300)
T ss_dssp HHHTBTTST------TTTGC-TTEEEBT-T----------TTBEEEESSTTTHHHHHHHHHHHHHHTTSS-----EEEEE
T ss_pred HhcCcccCC------CCCcc-ccccccc-c----------ceeeeccccccccCccccchhHhhhhcCCc-----eeEEE
Confidence 999998444 34533 4555322 1 256778899999999999999999988776 99999
Q ss_pred EecCcccCCCchHHHhhhcc---CCCCCccccEEEEEEeCCcccccCCCCCCCcchhhH------------------HHH
Q 002323 397 IHGDGSFAGQGVVYETLHLS---ALPNYTTGGTIHIVVNNQVAFTTDPRAGRSSQYCTD------------------AVV 455 (936)
Q Consensus 397 ~hGDgA~sGQGvv~EtLNlA---~LP~Y~~GGtIhIV~NNQigfTT~~~~~rss~y~tD------------------AV~ 455 (936)
+|||||++ ||+|||+|||| +|| +||||+||||||||+.++++++.+.+| ||+
T Consensus 129 ~~GDga~~-qG~~~EalN~A~~~~lP------vifvveNN~~aist~~~~~~~~~~~~~~a~~~gip~~~VDG~D~~av~ 201 (300)
T PF00676_consen 129 FFGDGATS-QGDFHEALNLAALWKLP------VIFVVENNQYAISTPTEEQTASPDIADRAKGYGIPGIRVDGNDVEAVY 201 (300)
T ss_dssp EEETGGGG-SHHHHHHHHHHHHTTTS------EEEEEEEESEETTEEHHHHCSSSTSGGGGGGTTSEEEEEETTSHHHHH
T ss_pred EecCcccc-cCccHHHHHHHhhccCC------eEEEEecCCcccccCccccccccchhhhhhccCCcEEEECCEeHHHHH
Confidence 99999976 99999999999 999 999999999999999999888877654 999
Q ss_pred HHHHHHHHHHHccCCCEEEEEEeeecCCCCCCCCCC-CCCHHHHHHHHcCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Q 002323 456 HVCELAAEWRQKFHSDVVVDLVCYRRFGHNEIDEPS-FTQPKMYQVIRSHPSAFEIYQKKLLESAQVTQEDINRIQEKVN 534 (936)
Q Consensus 456 ~a~~~A~e~rr~f~~pvlIdlv~YRr~GHne~Ddp~-ytqp~~y~~i~~~~dpl~~y~~~Li~eGilt~eei~~i~~~~~ 534 (936)
+|+++|++|+|+|+||+|||++|||++|||++|+|. ||+|+||+.|++++||+.+|+++|+++|++|++++++|+++++
T Consensus 202 ~a~~~A~~~~R~g~gP~lie~~tyR~~gHs~~Dd~~~yr~~~e~~~~~~~~DPi~~~~~~L~~~g~~t~~~~~~i~~e~~ 281 (300)
T PF00676_consen 202 EAAKEAVEYARAGKGPVLIEAVTYRLRGHSESDDPTFYRSPEEYEEWWKKRDPIKRFRRYLIEEGVLTEEELDAIEAEIK 281 (300)
T ss_dssp HHHHHHHHHHHTTT--EEEEEEE--SS-SSTTSCGGGTSHHHHHHHHHHCT-HHHHHHHHHHHTTSS-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCCEEEEEeeccCCCCCCCCCccccCCHHHHHHHHhcCcHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Confidence 999999999999999999999999999999999987 7779999999888999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhcC-CCc
Q 002323 535 TILNEEFMASKDYV-PKR 551 (936)
Q Consensus 535 ~~l~~a~~~A~~~~-p~~ 551 (936)
++|++++++|++.| |++
T Consensus 282 ~~v~~a~~~a~~~p~p~~ 299 (300)
T PF00676_consen 282 AEVEEAVEFAEASPEPDP 299 (300)
T ss_dssp HHHHHHHHHHHHSHBC-G
T ss_pred HHHHHHHHHHHhCCCCCC
Confidence 99999999999876 543
No 11
>PLN02374 pyruvate dehydrogenase (acetyl-transferring)
Probab=100.00 E-value=3.7e-54 Score=489.79 Aligned_cols=300 Identities=21% Similarity=0.339 Sum_probs=267.9
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhccccc----cCCcchhhhhHHHHHHHHhhCCCCcEEecCCCCchHHHHH
Q 002323 229 MQYNRQRREVILDRLIWSTQFENFLATKWTTAKRFG----LEGGETLIPGMKEMFDRAADLGVESIVIGMPHRGRLNVLG 304 (936)
Q Consensus 229 ~~ls~e~~~~il~~M~~ar~fE~fl~~k~~~~Krfg----leG~Eali~gl~~li~~A~~~Gv~DivigM~HRgrlnvLa 304 (936)
+.+++|+++++|++|+++|.||+++.++|+++|+|| ..|+|++++|+..+++ .+|++++ +||+|+++|+
T Consensus 81 ~~ls~e~ll~lyr~M~~~R~fEe~~~~l~~~Gki~g~~h~~~GqEA~~vg~~~aL~------~~D~v~~-~yR~h~~~La 153 (433)
T PLN02374 81 LLVTREEGLELYEDMVLGRSFEDMCAQMYYRGKMFGFVHLYNGQEAVSTGFIKLLK------KDDSVVS-TYRDHVHALS 153 (433)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCcceeccCCCCCcHHHHHHHHHHcC------CCCEEEc-cCcChHHhhh
Confidence 578999999999999999999999999999999987 4999999999988764 3799999 9999999999
Q ss_pred hhcCCCHHHHHHhhcCCCCCCCCCCCccCCCCcccccccccCCCCCCCceeeeeeccccCCCccccceeechhHHHHHhc
Q 002323 305 NVVRKPLRQIFSEFSGGTKPVDEDGLYTGTGDVKYHLGTSYDRPTRGGKRIHLSLVANPSHLEAVDPVVVGKTRAKQYYS 384 (936)
Q Consensus 305 ~vlg~p~~~ifaEf~G~~~~~~~G~~~ggsGDVkyHlG~s~~~~~~~g~~I~lsl~~NPSHLeav~PVa~G~ArA~q~~~ 384 (936)
+ |+++.+||+|++|+.++.++|+ ||+ ||++ +.+.++.++. ++||.+.|+|+|+|+|.|+++
T Consensus 154 ~--G~~~~~~mael~Gk~~g~~~Gr--ggs----mH~~-~~~~~~~g~~----------g~lG~~lP~AvGaA~A~k~~~ 214 (433)
T PLN02374 154 K--GVPARAVMSELFGKATGCCRGQ--GGS----MHMF-SKEHNLLGGF----------AFIGEGIPVATGAAFSSKYRR 214 (433)
T ss_pred c--CCCHHHHHHHHcCCCCCCCCCC--CCc----CccC-chhhCCCCCc----------eeccCchhHHHHHHHHHHHhh
Confidence 9 9999999999999999999886 666 9994 5566655554 449999999999999999986
Q ss_pred CCC--CCCceEEEEEecCcccCCCchHHHhhhcc---CCCCCccccEEEEEEeCCcccccCCCCCCCcc-hhh-------
Q 002323 385 HDV--DRTKNMGVLIHGDGSFAGQGVVYETLHLS---ALPNYTTGGTIHIVVNNQVAFTTDPRAGRSSQ-YCT------- 451 (936)
Q Consensus 385 ~d~--~~~~~v~v~~hGDgA~sGQGvv~EtLNlA---~LP~Y~~GGtIhIV~NNQigfTT~~~~~rss~-y~t------- 451 (936)
... ...+.++||++|||+++ +|.|||+||+| +|| +||||+||+|+++|+...+.+.+ +..
T Consensus 215 ~~~~~~~~~~vvv~~~GDGa~~-eG~f~EaLn~A~~~~LP------vIfVV~NN~yaig~~~~~~t~~~dia~~A~a~G~ 287 (433)
T PLN02374 215 EVLKEESCDDVTLAFFGDGTCN-NGQFFECLNMAALWKLP------IVFVVENNLWAIGMSHLRATSDPEIWKKGPAFGM 287 (433)
T ss_pred ccccccCCCCEEEEEECCCccc-cChHHHHHHHHHHhCCC------EEEEEeCCCEeecceeeeccCCCCHHHHHHhcCC
Confidence 411 12357999999999998 99999999999 999 99999999999999766554332 111
Q ss_pred --------H--HHHHHHHHHHHHHHccCCCEEEEEEeeecCCCCCCCCCCCCCHHHHHHHHcCCCHHHHHHHHHHHcCCC
Q 002323 452 --------D--AVVHVCELAAEWRQKFHSDVVVDLVCYRRFGHNEIDEPSFTQPKMYQVIRSHPSAFEIYQKKLLESAQV 521 (936)
Q Consensus 452 --------D--AV~~a~~~A~e~rr~f~~pvlIdlv~YRr~GHne~Ddp~ytqp~~y~~i~~~~dpl~~y~~~Li~eGil 521 (936)
| ||+++++.|++++|++++|+|||++|||++|||++|++.||+|+|++.|+ .+||+.+|+++|+++|++
T Consensus 288 ~~~~VDG~D~~av~~a~~~A~~~Ar~g~gP~LIe~~tyR~~GHs~~D~~~YR~~~e~~~~~-~~DPi~~~~~~L~~~gi~ 366 (433)
T PLN02374 288 PGVHVDGMDVLKVREVAKEAIERARRGEGPTLVECETYRFRGHSLADPDELRDPAEKAHYA-ARDPIAALKKYLIENGLA 366 (433)
T ss_pred cEEEECCCCHHHHHHHHHHHHHHHHHcCCCEEEEEEEEecCCcCCCCccccCCHHHHHHHH-cCCcHHHHHHHHHHcCCC
Confidence 2 99999999999999999999999999999999999999999999999999 599999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHhhhcC-CCccchhhhhccCC
Q 002323 522 TQEDINRIQEKVNTILNEEFMASKDYV-PKRRDWLSAYWAGF 562 (936)
Q Consensus 522 t~eei~~i~~~~~~~l~~a~~~A~~~~-p~~~~~~~~~w~~~ 562 (936)
|++++++|+++++++|++++++|++.| |++.++++++|++.
T Consensus 367 te~e~~~i~~~~~~~v~~a~~~A~~~p~P~~~~~~~~vy~~~ 408 (433)
T PLN02374 367 TEAELKAIEKKIDEVVEDAVEFADASPLPPRSQLLENVFADP 408 (433)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHhccccCC
Confidence 999999999999999999999998877 78888999999753
No 12
>TIGR03182 PDH_E1_alph_y pyruvate dehydrogenase E1 component, alpha subunit. Members of this protein family are the alpha subunit of the E1 component of pyruvate dehydrogenase (PDH). This model represents one branch of a larger family that E1-alpha proteins from 2-oxoisovalerate dehydrogenase, acetoin dehydrogenase, another PDH clade, etc.
Probab=100.00 E-value=8e-54 Score=471.80 Aligned_cols=288 Identities=19% Similarity=0.317 Sum_probs=260.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhccccc----cCCcchhhhhHHHHHHHHhhCCCCcEEecCCCCchHHHHHhhcC
Q 002323 233 RQRREVILDRLIWSTQFENFLATKWTTAKRFG----LEGGETLIPGMKEMFDRAADLGVESIVIGMPHRGRLNVLGNVVR 308 (936)
Q Consensus 233 ~e~~~~il~~M~~ar~fE~fl~~k~~~~Krfg----leG~Eali~gl~~li~~A~~~Gv~DivigM~HRgrlnvLa~vlg 308 (936)
+|+++++|+.|+++|.||+.+.++++++|..| +.|+|++.+|+...+ ..+||+++ +||+|+.+|++ |
T Consensus 1 ~~~l~~~y~~M~~~R~~d~~~~~l~~~g~~~~~~~~~~GqEa~~vg~~~al------~~~D~~~~-~yR~~~~~la~--G 71 (315)
T TIGR03182 1 KEELLELYRDMLLIRRFEEKAGQLYGMGKIGGFCHLYIGQEAVAVGLIAAL------KPDDYVIT-SYRDHGHALAR--G 71 (315)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHhCCccccccCCCCChHHHHHHHHHhC------CCCCEEEe-chhhHHHHHHc--C
Confidence 36889999999999999999999999998643 799999998876654 44799999 99999999999 9
Q ss_pred CCHHHHHHhhcCCCCCCCCCCCccCCCCcccccccccCCCCCCCceeeeeeccccCCCccccceeechhHHHHHhcCCCC
Q 002323 309 KPLRQIFSEFSGGTKPVDEDGLYTGTGDVKYHLGTSYDRPTRGGKRIHLSLVANPSHLEAVDPVVVGKTRAKQYYSHDVD 388 (936)
Q Consensus 309 ~p~~~ifaEf~G~~~~~~~G~~~ggsGDVkyHlG~s~~~~~~~g~~I~lsl~~NPSHLeav~PVa~G~ArA~q~~~~d~~ 388 (936)
.|+.++|+|++|+.+++++|| +|+ +|++ +.+. ++++..+.+|.+.|+|+|+++|.|+++.+
T Consensus 72 ~~~~~~~~~~~g~~~g~~~Gr--~g~----~h~~-~~~~----------~~~~~~g~~G~~lp~AiGaa~A~~~~~~~-- 132 (315)
T TIGR03182 72 VPPKEVMAELTGRATGCSKGK--GGS----MHMF-DREK----------NFYGGHGIVGAQVPLATGLAFANKYRGND-- 132 (315)
T ss_pred CCHHHHHHHHcCCCCCCCCCC--CCC----CCcC-chhh----------CcccCcCcccccccHHHHHHHHHHHhCCC--
Confidence 999999999999999999887 677 8995 4343 34555677999999999999999998665
Q ss_pred CCceEEEEEecCcccCCCchHHHhhhcc---CCCCCccccEEEEEEeCCcccccCCCCCCCcchhhH-------------
Q 002323 389 RTKNMGVLIHGDGSFAGQGVVYETLHLS---ALPNYTTGGTIHIVVNNQVAFTTDPRAGRSSQYCTD------------- 452 (936)
Q Consensus 389 ~~~~v~v~~hGDgA~sGQGvv~EtLNlA---~LP~Y~~GGtIhIV~NNQigfTT~~~~~rss~y~tD------------- 452 (936)
.++|+++||||++ ||.|||+||+| +|| +||||+|||||++|+...+++..+.++
T Consensus 133 ---~~vv~~~GDGa~~-~g~~~ealn~A~~~~lP------vi~vv~NN~yg~s~~~~~~~~~~~~a~~A~a~G~~~~~Vd 202 (315)
T TIGR03182 133 ---NVTACFFGDGAAN-QGQFYESFNMAALWKLP------VIFVIENNLYAMGTSVERSSSVTDLYKRGESFGIPGERVD 202 (315)
T ss_pred ---CEEEEEeCCCccc-ccHHHHHHHHhhccCcC------EEEEEEcCCccccCCHHHHhCCcCHHHHHHhCCCCEEEEC
Confidence 8999999999997 99999999999 999 999999999999998776665544433
Q ss_pred -----HHHHHHHHHHHHHHccCCCEEEEEEeeecCCCCCCCCCCCCCHHHHHHHHcCCCHHHHHHHHHHHcCCCCHHHHH
Q 002323 453 -----AVVHVCELAAEWRQKFHSDVVVDLVCYRRFGHNEIDEPSFTQPKMYQVIRSHPSAFEIYQKKLLESAQVTQEDIN 527 (936)
Q Consensus 453 -----AV~~a~~~A~e~rr~f~~pvlIdlv~YRr~GHne~Ddp~ytqp~~y~~i~~~~dpl~~y~~~Li~eGilt~eei~ 527 (936)
||+++++.|+++++++++|+|||++|||++|||++|++.||+|+||+.|+ .+||+.+|+++|+++|++|+++++
T Consensus 203 g~d~~av~~a~~~A~~~ar~~~gP~lIe~~t~R~~gHs~~D~~~Yr~~~e~~~~~-~~dPi~~~~~~L~~~g~~~~~~~~ 281 (315)
T TIGR03182 203 GMDVLAVREAAKEAVERARSGKGPILLEMKTYRFRGHSMSDPAKYRSKEEVEEWR-KRDPIEKLKARLIEQGIASEEELK 281 (315)
T ss_pred CCCHHHHHHHHHHHHHHHHccCCCEEEEEeCCcCCCCCCCCccccCCHHHHHHHH-hcCHHHHHHHHHHHCCCCCHHHHH
Confidence 99999999999999999999999999999999999999999999999999 599999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhhcC-CCccchhhhhc
Q 002323 528 RIQEKVNTILNEEFMASKDYV-PKRRDWLSAYW 559 (936)
Q Consensus 528 ~i~~~~~~~l~~a~~~A~~~~-p~~~~~~~~~w 559 (936)
+++++++++|+++++.|++.| |++.+.++++|
T Consensus 282 ~~~~~~~~~v~~a~~~a~~~p~p~~~~~~~~vy 314 (315)
T TIGR03182 282 EIDKEVRAEVEEAVEFAENSPEPPVEELYTDVY 314 (315)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCCCHHHHHhhcc
Confidence 999999999999999999988 78888887776
No 13
>CHL00149 odpA pyruvate dehydrogenase E1 component alpha subunit; Reviewed
Probab=100.00 E-value=1.2e-51 Score=458.60 Aligned_cols=298 Identities=19% Similarity=0.282 Sum_probs=263.8
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhccccc----cCCcchhhhhHHHHHHHHhhCCCCcEEecCCCCchHHHHH
Q 002323 229 MQYNRQRREVILDRLIWSTQFENFLATKWTTAKRFG----LEGGETLIPGMKEMFDRAADLGVESIVIGMPHRGRLNVLG 304 (936)
Q Consensus 229 ~~ls~e~~~~il~~M~~ar~fE~fl~~k~~~~Krfg----leG~Eali~gl~~li~~A~~~Gv~DivigM~HRgrlnvLa 304 (936)
..+++|+++++|+.|+++|.||+.+.++|+++|..| +.|+|++.+|+...+ ..+|++++ +||+|+.+|+
T Consensus 15 ~~~~~~~ll~~y~~M~~~R~~e~~~~~~~~~g~i~g~~~~~~GqEa~~vg~~~al------~~~D~~~~-~yR~~~~~la 87 (341)
T CHL00149 15 NNINSMWLLVLYEDMLLGRNFEDMCAQMYYRGKMFGFVHLYNGQEAVSTGVIKLL------AETDYVCS-TYRDHVHALS 87 (341)
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccccCCCCChHHHHHHHHHhC------CCCCEEEc-ccccHHHHHH
Confidence 358999999999999999999999999999998643 799999998887665 34799999 9999999999
Q ss_pred hhcCCCHHHHHHhhcCCCCCCCCCCCccCCCCcccccccccCCCCCCCceeeeeeccccCCCccccceeechhHHHHHhc
Q 002323 305 NVVRKPLRQIFSEFSGGTKPVDEDGLYTGTGDVKYHLGTSYDRPTRGGKRIHLSLVANPSHLEAVDPVVVGKTRAKQYYS 384 (936)
Q Consensus 305 ~vlg~p~~~ifaEf~G~~~~~~~G~~~ggsGDVkyHlG~s~~~~~~~g~~I~lsl~~NPSHLeav~PVa~G~ArA~q~~~ 384 (936)
+ |.++.++|+|++|+.+++++|| +|| +|+. +.+.++. +..+++|.+.|.|+|+++|.++++
T Consensus 88 ~--G~~~~~~~ae~~g~~~g~~~Gr--~gs----~H~~-~~~~~~~----------~~~g~lG~~lp~AvGaa~A~k~~~ 148 (341)
T CHL00149 88 K--GVPPKNVMAELFGKETGCSRGR--GGS----MHIF-SAPHNFL----------GGFAFIGEGIPIALGAAFQSIYRQ 148 (341)
T ss_pred c--CCCHHHHHHHHcCCCCCCCCCC--CCC----cccc-chhcCcc----------CCChhhhccHHHHHHHHHHHHHhc
Confidence 9 9999999999999999999987 777 8995 4444443 345669999999999999999886
Q ss_pred CC--CCCCceEEEEEecCcccCCCchHHHhhhcc---CCCCCccccEEEEEEeCCcccccCCCCCCCcc-hhh-------
Q 002323 385 HD--VDRTKNMGVLIHGDGSFAGQGVVYETLHLS---ALPNYTTGGTIHIVVNNQVAFTTDPRAGRSSQ-YCT------- 451 (936)
Q Consensus 385 ~d--~~~~~~v~v~~hGDgA~sGQGvv~EtLNlA---~LP~Y~~GGtIhIV~NNQigfTT~~~~~rss~-y~t------- 451 (936)
.. ....+.++||++||||++ +|.|||+||+| +|| +||||+||+|+++|+.+.+.+.. +..
T Consensus 149 ~~~~~~~~~~vvv~~~GDGa~~-~G~~~Ealn~A~~~~LP------vifvv~NN~~~i~~~~~~~~~~~d~a~~a~a~G~ 221 (341)
T CHL00149 149 QVLKEVQPLRVTACFFGDGTTN-NGQFFECLNMAVLWKLP------IIFVVENNQWAIGMAHHRSTSIPEIHKKAEAFGL 221 (341)
T ss_pred cccccCCCCCEEEEEeCCchhh-hcHHHHHHHHHhhcCCC------EEEEEEeCCeeeecchhheeCCccHHHHHHhCCC
Confidence 31 012348999999999998 99999999999 999 99999999999999876554332 221
Q ss_pred --------H--HHHHHHHHHHHHHHccCCCEEEEEEeeecCCCCCCCCCCCCCHHHHHHHHcCCCHHHHHHHHHHHcCCC
Q 002323 452 --------D--AVVHVCELAAEWRQKFHSDVVVDLVCYRRFGHNEIDEPSFTQPKMYQVIRSHPSAFEIYQKKLLESAQV 521 (936)
Q Consensus 452 --------D--AV~~a~~~A~e~rr~f~~pvlIdlv~YRr~GHne~Ddp~ytqp~~y~~i~~~~dpl~~y~~~Li~eGil 521 (936)
| ||+++++.|++++|++++|+|||+.|||++||+++|++.||+++|++.|+ ++||+.+|+++|+++|++
T Consensus 222 ~~~~Vdg~d~~av~~a~~~A~~~ar~~~gP~lIev~tyR~~gHs~~D~~~YR~~~e~~~~~-~~DPi~~~~~~L~~~g~~ 300 (341)
T CHL00149 222 PGIEVDGMDVLAVREVAKEAVERARQGDGPTLIEALTYRFRGHSLADPDELRSKQEKEAWV-ARDPIKKLKSYIIDNELA 300 (341)
T ss_pred CEEEEeCCCHHHHHHHHHHHHHHHHhCCCCEEEEEEEecCCCcCCCCCccCCCHHHHHHHh-cCCHHHHHHHHHHHcCCC
Confidence 1 99999999999999999999999999999999999999999999999999 589999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHhhhcC-CCccchhhhhcc
Q 002323 522 TQEDINRIQEKVNTILNEEFMASKDYV-PKRRDWLSAYWA 560 (936)
Q Consensus 522 t~eei~~i~~~~~~~l~~a~~~A~~~~-p~~~~~~~~~w~ 560 (936)
|++++++++++++++|++++++|++.| |++.+.+.++|+
T Consensus 301 ~~~~~~~i~~e~~~~v~~a~~~a~~~p~p~~~~~~~~vy~ 340 (341)
T CHL00149 301 SQKELNKIQREVKIEIEQAVQFAISSPEPNISDLKKYLFA 340 (341)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHhhccc
Confidence 999999999999999999999999988 888888888874
No 14
>KOG0225 consensus Pyruvate dehydrogenase E1, alpha subunit [Energy production and conversion]
Probab=100.00 E-value=1.1e-51 Score=441.06 Aligned_cols=293 Identities=20% Similarity=0.335 Sum_probs=270.3
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhccccc----cCCcchhhhhHHHHHHHHhhCCCCcEEecCCCCchHHHHH
Q 002323 229 MQYNRQRREVILDRLIWSTQFENFLATKWTTAKRFG----LEGGETLIPGMKEMFDRAADLGVESIVIGMPHRGRLNVLG 304 (936)
Q Consensus 229 ~~ls~e~~~~il~~M~~ar~fE~fl~~k~~~~Krfg----leG~Eali~gl~~li~~A~~~Gv~DivigM~HRgrlnvLa 304 (936)
..+++|+.+.+|+.|+..|.||.....+|...|.+| +.|||++.+|+..++.. .|.||. +||+|+..+.
T Consensus 54 ~~~t~ee~L~~Y~~M~~~RrmE~aad~lYK~k~IRGFCHLy~GQEAvavGme~ait~------~D~iIt-sYR~Hg~~~~ 126 (394)
T KOG0225|consen 54 VELTKEEALKYYRDMQTIRRMELAADQLYKAKKIRGFCHLYDGQEAVAVGMEAAITK------SDSIIT-SYRCHGWTYL 126 (394)
T ss_pred EEecHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhceeeeecccHHHHHHHHHHhccC------CCceEE-EeeeeeEEee
Confidence 468999999999999999999999999999998887 69999999999888753 577888 8999999998
Q ss_pred hhcCCCHHHHHHhhcCCCCCCCCCCCccCCCCcccccccccCCCCCCCceeeeeeccccCCCccccceeechhHHHHHhc
Q 002323 305 NVVRKPLRQIFSEFSGGTKPVDEDGLYTGTGDVKYHLGTSYDRPTRGGKRIHLSLVANPSHLEAVDPVVVGKTRAKQYYS 384 (936)
Q Consensus 305 ~vlg~p~~~ifaEf~G~~~~~~~G~~~ggsGDVkyHlG~s~~~~~~~g~~I~lsl~~NPSHLeav~PVa~G~ArA~q~~~ 384 (936)
+ |.++.++|+|++|+..|+++|+ ||| ||+ ++++ |.+|++| +|+|.|+.+|.|+|.|+++
T Consensus 127 ~--G~S~~~v~aEL~Gr~~Gc~kGK--GGS----MHm-y~k~--FyGGnGI----------VGAQiPLGaGia~A~kY~~ 185 (394)
T KOG0225|consen 127 R--GVSVREVLAELMGRQAGCSKGK--GGS----MHM-YAKN--FYGGNGI----------VGAQIPLGAGIAFAQKYNR 185 (394)
T ss_pred c--CccHHHHHHHHhccccccccCC--Ccc----eee-eccc--ccCccce----------eccCCCccccHHHHHHhcc
Confidence 8 9999999999999999999997 899 999 5544 8999999 9999999999999999998
Q ss_pred CCCCCCceEEEEEecCcccCCCchHHHhhhcc---CCCCCccccEEEEEEeCCcccccCCCCCCCc-chhh---------
Q 002323 385 HDVDRTKNMGVLIHGDGSFAGQGVVYETLHLS---ALPNYTTGGTIHIVVNNQVAFTTDPRAGRSS-QYCT--------- 451 (936)
Q Consensus 385 ~d~~~~~~v~v~~hGDgA~sGQGvv~EtLNlA---~LP~Y~~GGtIhIV~NNQigfTT~~~~~rss-~y~t--------- 451 (936)
++ .|++.+.||||.+ ||-++|++||| +|| +||||+||.||+.|+.+++.++ .|-.
T Consensus 186 ~~-----~v~~alYGDGAaN-QGQ~fEa~NMA~LW~LP------~IFvCENN~yGMGTs~~Rasa~teyykRG~yiPGl~ 253 (394)
T KOG0225|consen 186 ED-----AVCFALYGDGAAN-QGQVFEAFNMAALWKLP------VIFVCENNHYGMGTSAERASASTEYYKRGDYIPGLK 253 (394)
T ss_pred CC-----ceEEEEecccccc-chhHHHHhhHHHHhCCC------EEEEEccCCCccCcchhhhhcChHHHhccCCCCceE
Confidence 87 9999999999999 99999999999 999 9999999999999988765443 2221
Q ss_pred ----H--HHHHHHHHHHHHHHccCCCEEEEEEeeecCCCCCCCC-CCCCCHHHHHHHHcCCCHHHHHHHHHHHcCCCCHH
Q 002323 452 ----D--AVVHVCELAAEWRQKFHSDVVVDLVCYRRFGHNEIDE-PSFTQPKMYQVIRSHPSAFEIYQKKLLESAQVTQE 524 (936)
Q Consensus 452 ----D--AV~~a~~~A~e~rr~f~~pvlIdlv~YRr~GHne~Dd-p~ytqp~~y~~i~~~~dpl~~y~~~Li~eGilt~e 524 (936)
| ||..|++.|.+|++++++|+++|+.|||.+|||.+|+ .+||+.+|.+..++++||+..++++|++.++.|++
T Consensus 254 VdGmdvlaVr~a~KfA~~~~~~g~GPilmE~~TYRy~GHSmSDPg~sYRtReEiq~vR~kRDPI~~lk~~li~~~late~ 333 (394)
T KOG0225|consen 254 VDGMDVLAVREATKFAKKYALEGKGPILMEMDTYRYHGHSMSDPGTSYRTREEIQEVRQKRDPIEGLKKRLIELGLATEE 333 (394)
T ss_pred ECCcchhhHHHHHHHHHHHHhcCCCCEEEEEeeeeecccccCCCCcccchHHHHHHHHhccChHHHHHHHHHHhcccCHH
Confidence 2 9999999999999999999999999999999999998 56999999999998899999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhcC-CCccchhhhhccC
Q 002323 525 DINRIQEKVNTILNEEFMASKDYV-PKRRDWLSAYWAG 561 (936)
Q Consensus 525 ei~~i~~~~~~~l~~a~~~A~~~~-p~~~~~~~~~w~~ 561 (936)
|+++|+++++++|++++++|++.| |.+.+++.++|..
T Consensus 334 ELKai~k~irkeVdeav~~A~~~p~p~~~eL~~dvy~~ 371 (394)
T KOG0225|consen 334 ELKAIDKEIRKEVDEAVAFATASPEPEPSELFTDVYVK 371 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHhhcc
Confidence 999999999999999999999988 7777788888754
No 15
>cd02000 TPP_E1_PDC_ADC_BCADC Thiamine pyrophosphate (TPP) family, E1 of PDC_ADC_BCADC subfamily, TPP-binding module; composed of proteins similar to the E1 components of the human pyruvate dehydrogenase complex (PDC), the acetoin dehydrogenase complex (ADC) and the branched chain alpha-keto acid dehydrogenase/2-oxoisovalerate dehydrogenase complex (BCADC). PDC catalyzes the irreversible oxidative decarboxylation of pyruvate to produce acetyl-CoA in the bridging step between glycolysis and the citric acid cycle. ADC participates in the breakdown of acetoin while BCADC participates in the breakdown of branched chain amino acids. BCADC catalyzes the oxidative decarboxylation of 4-methyl-2-oxopentanoate, 3-methyl-2-oxopentanoate and 3-methyl-2-oxobutanoate (branched chain 2-oxo acids derived from the transamination of leucine, valine and isoleucine).
Probab=100.00 E-value=1.6e-49 Score=433.44 Aligned_cols=267 Identities=21% Similarity=0.313 Sum_probs=241.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccccc----cCCcchhhhhHHHHHHHHhhCCCCcEEecCCCCchHHHHHhhcCCCHHHH
Q 002323 239 ILDRLIWSTQFENFLATKWTTAKRFG----LEGGETLIPGMKEMFDRAADLGVESIVIGMPHRGRLNVLGNVVRKPLRQI 314 (936)
Q Consensus 239 il~~M~~ar~fE~fl~~k~~~~Krfg----leG~Eali~gl~~li~~A~~~Gv~DivigM~HRgrlnvLa~vlg~p~~~i 314 (936)
+|+.|+++|.||+.+.++|+++|..+ ..|+|++.+|+...++ .+|++++ +||+|+++|++ |+|+.+|
T Consensus 1 ~y~~m~~~R~~e~~~~~~~~~g~~~~~~~~~~GqEa~~vg~~~~l~------~~D~~~~-~yR~~~~~la~--G~~~~~~ 71 (293)
T cd02000 1 LYRTMVLIRRFDERLLELYRQGKIGGFYHLSIGQEAVAVGVAAALR------PGDWVFP-TYRDHGHALAR--GVDLKEM 71 (293)
T ss_pred CHHHHHHHHHHHHHHHHHHHCCccccccCCCCChHHHHHHHHHHCC------CCCEEEe-cchhHHHHHHc--CCCHHHH
Confidence 58999999999999999999998665 8999999999877664 4799999 99999999999 9999999
Q ss_pred HHhhcCCCCCCCCCCCccCCCCcccccccccCCCCCCCceeeeeeccccCCCccccceeechhHHHHHhcCCCCCCceEE
Q 002323 315 FSEFSGGTKPVDEDGLYTGTGDVKYHLGTSYDRPTRGGKRIHLSLVANPSHLEAVDPVVVGKTRAKQYYSHDVDRTKNMG 394 (936)
Q Consensus 315 faEf~G~~~~~~~G~~~ggsGDVkyHlG~s~~~~~~~g~~I~lsl~~NPSHLeav~PVa~G~ArA~q~~~~d~~~~~~v~ 394 (936)
|+|++|+.+++++|+ +|+ +|++. .+ +++.+..+++|.+.|+++|+|+|.|+.+.+ .++
T Consensus 72 ~~e~~g~~~g~~~G~--~g~----~h~~~-~~----------~~~~~~~g~lG~~~p~a~G~a~a~k~~~~~-----~~v 129 (293)
T cd02000 72 LAELFGKETGPCKGR--GGS----MHIGD-KE----------KNFFGGNGIVGGQVPLAAGAALALKYRGED-----RVA 129 (293)
T ss_pred HHHHcCCCCCCCCCC--CCC----CCCCc-hh----------cCccccccccccchhHHHHHHHHHHHhCCC-----CEE
Confidence 999999999999886 566 89963 23 356677888999999999999999998765 899
Q ss_pred EEEecCcccCCCchHHHhhhcc---CCCCCccccEEEEEEeCCcccccCCCCCCCcchhhH------------------H
Q 002323 395 VLIHGDGSFAGQGVVYETLHLS---ALPNYTTGGTIHIVVNNQVAFTTDPRAGRSSQYCTD------------------A 453 (936)
Q Consensus 395 v~~hGDgA~sGQGvv~EtLNlA---~LP~Y~~GGtIhIV~NNQigfTT~~~~~rss~y~tD------------------A 453 (936)
|+++||||++ ||+|+|+||+| +|| +||||+||+||++|+...+.+....++ +
T Consensus 130 v~~~GDGa~~-~g~~~E~l~~A~~~~lP------vi~vv~NN~~~i~~~~~~~~~~~~~~~~a~a~G~~~~~Vdg~d~~~ 202 (293)
T cd02000 130 VCFFGDGATN-EGDFHEALNFAALWKLP------VIFVCENNGYAISTPTSRQTAGTSIADRAAAYGIPGIRVDGNDVLA 202 (293)
T ss_pred EEEeCCCccc-cchHHHHHHHHHhhCCC------EEEEEeeCCeeccCCHHHHhCCccHHHHHHhCCCCEEEECCCCHHH
Confidence 9999999997 99999999999 999 999999999999998765544333322 9
Q ss_pred HHHHHHHHHHHHHccCCCEEEEEEeeecCCCCCCCCCC-CCCHHHHHHHHcCCCHHHHHHHHHHHcCCCCHHHHHHHHHH
Q 002323 454 VVHVCELAAEWRQKFHSDVVVDLVCYRRFGHNEIDEPS-FTQPKMYQVIRSHPSAFEIYQKKLLESAQVTQEDINRIQEK 532 (936)
Q Consensus 454 V~~a~~~A~e~rr~f~~pvlIdlv~YRr~GHne~Ddp~-ytqp~~y~~i~~~~dpl~~y~~~Li~eGilt~eei~~i~~~ 532 (936)
|+.|++.|+++++++++|+|||++|||.+|||++|||. ||+|+|++.|+ ++||+.+|+++|+++|++|++++++++++
T Consensus 203 v~~a~~~A~~~ar~~~~P~lIev~~~r~~gHs~~dd~~~Yr~~~e~~~~~-~~dpi~~~~~~L~~~g~~~~~~~~~~~~~ 281 (293)
T cd02000 203 VYEAAKEAVERARAGGGPTLIEAVTYRLGGHSTSDDPSRYRTKEEVEEWK-KRDPILRLRKYLIEAGILTEEELAAIEAE 281 (293)
T ss_pred HHHHHHHHHHHHHccCCCEEEEEEEeccCCCCCCCCcccCCCHHHHHHHh-cCCHHHHHHHHHHHCCCCCHHHHHHHHHH
Confidence 99999999999999999999999999999999999886 99999999998 69999999999999999999999999999
Q ss_pred HHHHHHHHHHHh
Q 002323 533 VNTILNEEFMAS 544 (936)
Q Consensus 533 ~~~~l~~a~~~A 544 (936)
++++|++++++|
T Consensus 282 ~~~~v~~a~~~a 293 (293)
T cd02000 282 VKAEVEEAVEFA 293 (293)
T ss_pred HHHHHHHHHHhC
Confidence 999999998864
No 16
>TIGR03181 PDH_E1_alph_x pyruvate dehydrogenase E1 component, alpha subunit. Members of this protein family are the alpha subunit of the E1 component of pyruvate dehydrogenase (PDH). This model represents one branch of a larger family that E1-alpha proteins from 2-oxoisovalerate dehydrogenase, acetoin dehydrogenase, another PDH clade, etc.
Probab=100.00 E-value=9.3e-47 Score=419.84 Aligned_cols=285 Identities=18% Similarity=0.199 Sum_probs=249.8
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhccc---cccCCcchhhhhHHHHHHHHhhCCCCcEEecCCCCchHHHHHh
Q 002323 229 MQYNRQRREVILDRLIWSTQFENFLATKWTTAKR---FGLEGGETLIPGMKEMFDRAADLGVESIVIGMPHRGRLNVLGN 305 (936)
Q Consensus 229 ~~ls~e~~~~il~~M~~ar~fE~fl~~k~~~~Kr---fgleG~Eali~gl~~li~~A~~~Gv~DivigM~HRgrlnvLa~ 305 (936)
+.+++|+++++|+.|+++|.||+.+..+|.++|. +...|+|++.+|+...+ ..+|++++ +||+|+.+|++
T Consensus 19 ~~~~~~~l~~~y~~m~~~R~~e~~~~~~~~~g~i~~~~~~~GqEa~~vg~~~al------~~~D~~~~-~yR~h~~~l~~ 91 (341)
T TIGR03181 19 PDLSDEELVELYRDMVLTRRFDTKALALQRQGRLGTYAPNLGQEAAQVGSALAL------RKDDWVFP-SYRDHAAMLAR 91 (341)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCceecccCCCChHHHHHHHHHHc------CCCCEEEc-chhhHHHHHHc
Confidence 4689999999999999999999999999998884 13699999998887665 34799999 99999999999
Q ss_pred hcCCCHHHHHHhhcCCCCCCCCCCCccCCCCcccccccccCCCCCCCceeeeeeccccCCCccccceeechhHHHHHhcC
Q 002323 306 VVRKPLRQIFSEFSGGTKPVDEDGLYTGTGDVKYHLGTSYDRPTRGGKRIHLSLVANPSHLEAVDPVVVGKTRAKQYYSH 385 (936)
Q Consensus 306 vlg~p~~~ifaEf~G~~~~~~~G~~~ggsGDVkyHlG~s~~~~~~~g~~I~lsl~~NPSHLeav~PVa~G~ArA~q~~~~ 385 (936)
|.++.++|+|++|+.++. . + +.+.+ +++-.|.+|.+.|.|+|+|.|.|+.+.
T Consensus 92 --G~~~~~~~ae~~g~~~g~--------~------~--~~~~~----------~~g~~~~vG~~lp~AiGaAla~k~~~~ 143 (341)
T TIGR03181 92 --GVPLVEILLYWRGDERGS--------W------D--PEGVN----------ILPPNIPIGTQYLHAAGVAYALKLRGE 143 (341)
T ss_pred --CCCHHHHHHHhcCcCcCC--------C------C--chhcC----------ccCCCchHhcchhHHHhHHHHHHhhCC
Confidence 999999999999986432 1 1 12222 333345699999999999999999876
Q ss_pred CCCCCceEEEEEecCcccCCCchHHHhhhcc---CCCCCccccEEEEEEeCCcccccCCCCCC-Ccchhh----------
Q 002323 386 DVDRTKNMGVLIHGDGSFAGQGVVYETLHLS---ALPNYTTGGTIHIVVNNQVAFTTDPRAGR-SSQYCT---------- 451 (936)
Q Consensus 386 d~~~~~~v~v~~hGDgA~sGQGvv~EtLNlA---~LP~Y~~GGtIhIV~NNQigfTT~~~~~r-ss~y~t---------- 451 (936)
+ .++||++|||||+ +|.|+|+||+| +|| +||||+||+|+++|+...+. ...|..
T Consensus 144 ~-----~~vv~~~GDGa~~-~g~~~EaL~tA~~~~LP------vi~Vv~NN~~~~~~~~~~~~~~~d~~~~a~a~G~~~~ 211 (341)
T TIGR03181 144 D-----NVAVTYFGDGGTS-EGDFYEALNFAGVFKAP------VVFFVQNNQWAISVPRSKQTAAPTLAQKAIAYGIPGV 211 (341)
T ss_pred C-----CEEEEEecCCccc-cChHHHHHHHHhccCCC------EEEEEECCCCccccchhhhhCCcCHHHHHhhCCCCEE
Confidence 6 8999999999998 99999999999 999 99999999999999754332 222321
Q ss_pred -----H--HHHHHHHHHHHHHHccCCCEEEEEEeeecCCCCCCCCC-CCCCHHHHHHHHcCCCHHHHHHHHHHHcCCCCH
Q 002323 452 -----D--AVVHVCELAAEWRQKFHSDVVVDLVCYRRFGHNEIDEP-SFTQPKMYQVIRSHPSAFEIYQKKLLESAQVTQ 523 (936)
Q Consensus 452 -----D--AV~~a~~~A~e~rr~f~~pvlIdlv~YRr~GHne~Ddp-~ytqp~~y~~i~~~~dpl~~y~~~Li~eGilt~ 523 (936)
| ||+++++.|+++++++++|+|||++|||++|||++|+| .||++++.+.|+ ++||+.+|+++|+++|++|+
T Consensus 212 ~Vdg~d~~av~~a~~~A~~~a~~~~gP~lIev~t~R~~gH~~~D~~~~YR~~~e~~~~~-~~Dpi~~~~~~L~~~g~~~~ 290 (341)
T TIGR03181 212 QVDGNDVLAVYAVTKEAVERARSGGGPTLIEAVTYRLGPHTTADDPTRYRTKEEEEEWR-KKDPILRLRKYLERKGLWDE 290 (341)
T ss_pred EECCCCHHHHHHHHHHHHHHHHcCCCCEEEEEEeecCCCCCCCCCCccCCCHHHHHHHh-cCCHHHHHHHHHHHCCCCCH
Confidence 1 99999999999999999999999999999999999988 699999999999 59999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhcC-CCccchhhhhccC
Q 002323 524 EDINRIQEKVNTILNEEFMASKDYV-PKRRDWLSAYWAG 561 (936)
Q Consensus 524 eei~~i~~~~~~~l~~a~~~A~~~~-p~~~~~~~~~w~~ 561 (936)
+++++++++++++|++++++|++.| |++++.+.++|.+
T Consensus 291 ~e~~~i~~~~~~~v~~a~~~a~~~p~P~~~~~~~~vy~~ 329 (341)
T TIGR03181 291 EQEEALEEEAEAEVAEAVAEALALPPPPVDDIFDHVYAE 329 (341)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHhhcccC
Confidence 9999999999999999999999988 8888889999875
No 17
>KOG1182 consensus Branched chain alpha-keto acid dehydrogenase complex, alpha subunit [Energy production and conversion]
Probab=100.00 E-value=1.9e-42 Score=366.94 Aligned_cols=313 Identities=17% Similarity=0.231 Sum_probs=269.4
Q ss_pred cccCCHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhccccc----cCCcchhhhhHHHHHHHHh
Q 002323 208 MHIADRDQCNWLRDKIETPTPMQYNRQRREVILDRLIWSTQFENFLATKWTTAKRFG----LEGGETLIPGMKEMFDRAA 283 (936)
Q Consensus 208 ~hi~~~e~r~Wl~~~iE~~~~~~ls~e~~~~il~~M~~ar~fE~fl~~k~~~~Krfg----leG~Eali~gl~~li~~A~ 283 (936)
..+.|.+.+- |...+.+.++.|..++||+.|+....+|+.|..-+++|+ .| .-|.|+.-+|- |+
T Consensus 65 YRV~d~~G~i-----i~~sqdp~~~ee~~~kmy~~M~~Ln~MD~IlYesQRQGR-iSFYmT~~GEEa~higS------AA 132 (432)
T KOG1182|consen 65 YRVMDADGQI-----IDKSQDPQLSEEVVLKMYKDMTLLNIMDRILYESQRQGR-ISFYMTNFGEEAIHIGS------AA 132 (432)
T ss_pred EEEecCCCcc-----cCcccCCCcCHHHHHHHHHHHHHHHHHHHHHHHHhhcce-EEEEEeccchhhhhhhh------hh
Confidence 4556665542 222335789999999999999999999999999988765 33 57888887654 55
Q ss_pred hCCCCcEEecCCCCchHHHHHhhcCCCHHHHHHhhcCCCCCCCCCCCccCCCCcccccccccCCCCCCCceeeeeecccc
Q 002323 284 DLGVESIVIGMPHRGRLNVLGNVVRKPLRQIFSEFSGGTKPVDEDGLYTGTGDVKYHLGTSYDRPTRGGKRIHLSLVANP 363 (936)
Q Consensus 284 ~~Gv~DivigM~HRgrlnvLa~vlg~p~~~ifaEf~G~~~~~~~G~~~ggsGDVkyHlG~s~~~~~~~g~~I~lsl~~NP 363 (936)
++..+|+|+| .||.-+-+|-+ |.++++++.+.+|+..+..+| ..|+.|+|. .+++ .+.-+
T Consensus 133 AL~p~Dli~g-QYREaGVLlwR--gftle~f~~qCyGn~~d~gkG------rQMPvHyGs-~eln----------f~tis 192 (432)
T KOG1182|consen 133 ALEPQDLIYG-QYREAGVLLWR--GFTLEEFMNQCYGNKSDLGKG------RQMPVHYGS-KELN----------FVTIS 192 (432)
T ss_pred hCCccccccc-ccccCceEEEc--CccHHHHHHHhcCCccccccc------cccccccCc-cccc----------eEEec
Confidence 5667999999 99999999999 999999999999998776443 468999984 3443 34457
Q ss_pred CCCccccceeechhHHHHHhcCCCCCCceEEEEEecCcccCCCchHHHhhhcc---CCCCCccccEEEEEEeCCcccccC
Q 002323 364 SHLEAVDPVVVGKTRAKQYYSHDVDRTKNMGVLIHGDGSFAGQGVVYETLHLS---ALPNYTTGGTIHIVVNNQVAFTTD 440 (936)
Q Consensus 364 SHLeav~PVa~G~ArA~q~~~~d~~~~~~v~v~~hGDgA~sGQGvv~EtLNlA---~LP~Y~~GGtIhIV~NNQigfTT~ 440 (936)
|+|.++.|.|+|+|+|.+++.++ +.++||+|||||+| +|++|-+|||| ..| +||||-||+|+||||
T Consensus 193 splatqlpqAvGaaYa~k~~~~n----nac~V~yfGdG~aS-EGD~HA~~NfAAtle~P------vif~CRNNG~AISTp 261 (432)
T KOG1182|consen 193 SPLATQLPQAVGAAYALKMRKKN----NACAVTYFGDGAAS-EGDAHAAFNFAATLECP------VIFFCRNNGWAISTP 261 (432)
T ss_pred chhhhccchhhhhhhhhhhcccC----CeEEEEEecCCccc-ccchhhhhhHHHHhCCC------EEEEEcCCCeeeccc
Confidence 89999999999999999987654 58999999999999 99999999999 999 999999999999999
Q ss_pred CCCCCCc--------chh--------hH--HHHHHHHHHHHHHHccCCCEEEEEEeeecCCCCCCCCCC-CCCHHHHHHH
Q 002323 441 PRAGRSS--------QYC--------TD--AVVHVCELAAEWRQKFHSDVVVDLVCYRRFGHNEIDEPS-FTQPKMYQVI 501 (936)
Q Consensus 441 ~~~~rss--------~y~--------tD--AV~~a~~~A~e~rr~f~~pvlIdlv~YRr~GHne~Ddp~-ytqp~~y~~i 501 (936)
.++|-.+ .|. .| |||.|++.|.+++-+.++|||||++|||...|+++||.+ ||+.+|++-|
T Consensus 262 tseQyr~DGIa~kG~aYGi~sIRVDGnD~lAvYnA~k~ARe~av~e~rPvliEamtYRvGHHSTSDDSt~YRsadEiq~W 341 (432)
T KOG1182|consen 262 TSEQYRGDGIAVKGPAYGIRSIRVDGNDALAVYNAVKEAREMAVTEQRPVLIEAMTYRVGHHSTSDDSTAYRSADEIQYW 341 (432)
T ss_pred cHHHhcCCceEEeccccceEEEEecCcchHHHHHHHHHHHHHHHhccCchhhhhhhhhhccccCCCccccccchhhhhhh
Confidence 8766321 222 13 999999999999999999999999999999999999987 9999999999
Q ss_pred HcCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhhhcC-CCccchhhhhccCCC
Q 002323 502 RSHPSAFEIYQKKLLESAQVTQEDINRIQEKVNTILNEEFMASKDYV-PKRRDWLSAYWAGFK 563 (936)
Q Consensus 502 ~~~~dpl~~y~~~Li~eGilt~eei~~i~~~~~~~l~~a~~~A~~~~-p~~~~~~~~~w~~~~ 563 (936)
.+.+.|+.+|++++.+.|+|+++.-.++++++++++-++++.|++.+ |...++|.++|..++
T Consensus 342 ~~~~~pisrfr~~i~~~GWw~ee~E~~~rk~~rk~vl~a~~~aEk~~K~~~~~lF~dVYd~~P 404 (432)
T KOG1182|consen 342 NKSRHPISRFRKYIESNGWWSEEDESELRKNIRKKVLEAIAAAEKKEKPNLTELFEDVYDEMP 404 (432)
T ss_pred hcccCcHHHHHHHHHhcCCcChhhHHHHHHHHHHHHHHHHHHHhcccCCCHHHHHHHHhhhhh
Confidence 99999999999999999999999999999999999999999998765 788889999997653
No 18
>COG0022 AcoB Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, beta subunit [Energy production and conversion]
Probab=100.00 E-value=2.7e-34 Score=307.58 Aligned_cols=163 Identities=23% Similarity=0.291 Sum_probs=142.6
Q ss_pred hhhhcCCcEEEecccCCC--cccccccceeeecCCCceeecCCCCcccCCCcceEEEccCcchhHHHHHHhhhccCCCCc
Q 002323 630 TLLVEGNHVRLSGQDVER--GTFSHRHSVLHDQETGEKYCPLDHVMMNQDEEMFTVSNSSLSEFGVLGFELGYSMENPNS 707 (936)
Q Consensus 630 sLl~eg~~Vrl~GqDv~r--GtF~~RHavl~dq~t~~~y~pL~~l~~~~~~g~~rV~nspLSE~avlG~e~G~sl~g~~~ 707 (936)
--|.++.+|+|.||||+. |+|+. | ++|. ++||+.||+||||||.+++|.++|+|+.|.||
T Consensus 14 ~eM~rD~~V~v~GEDVg~~GGvf~~---------T-------~GL~--~kfG~~RV~DTPiaE~gi~G~avGaA~~GlrP 75 (324)
T COG0022 14 EEMERDERVVVLGEDVGVYGGVFRV---------T-------KGLQ--EKFGEERVIDTPIAESGIAGIAVGAALTGLRP 75 (324)
T ss_pred HHHhcCCCEEEEcccccccCChhhh---------c-------hhHH--HHhCccceecCccchhhhHHHHHHHHHcCCcc
Confidence 346799999999999986 99999 8 9999 99999999999999999999999999999999
Q ss_pred ceeeeccchhhhhhHHHHHHHHHhhhhhhhcC--ccccEEEcCccC-CCCCccccCchhhhhhhcCCCCCCcccCCCchh
Q 002323 708 LVLWEAQFGDFANGAQVIFDQFLSSGESKWLR--QTGLVVLLPHGY-DGQGPEHSSARLERFLQMSDDNPFVIPEMDPTL 784 (936)
Q Consensus 708 LviwEaqFgDF~n~Aq~iidqfi~~~~~kw~~--~s~lv~~lPhG~-~G~GpeHSs~RiERfLQl~~~~~~~~~~~pg~~ 784 (936)
|.|+||.||+..|.++|-+.+++.+++.+. .+|||+|.|.|. .+.|.+|||+ +| .+|.|+||
T Consensus 76 --ivEiqf~dF~~~a~dqi~n~aAk~ryrsgG~~~~PiviR~p~G~g~~~~~~HSqs-~e----------a~f~h~PG-- 140 (324)
T COG0022 76 --IVEIQFADFIYPAFDQIVNQAAKIRYRSGGQFTVPIVIRTPNGGGIGGGAQHSQS-LE----------ALFAHIPG-- 140 (324)
T ss_pred --eEEEEecchhHHHHHHHHHHHHHHhhhcCCceeCCEEEEcCCCCCCCchhhccCC-HH----------HHHhcCCC--
Confidence 999999999999944444444444444443 589999999987 6788999998 55 57889999
Q ss_pred hhhccccceEEEEcCCHHHHHHHHHHHHhcCCCCcEEEEccccccC-CCCCC
Q 002323 785 RKQIQECNWQIVNVTTPANYFHVLRRQIHRGFRKPLIVISPKNLLR-HKDCK 835 (936)
Q Consensus 785 ~~~~~~~N~~Vv~pstpa~~fhlLrrq~~r~~~~Pli~~~pK~Llr-~~~~~ 835 (936)
||||+||||+|++|||+++|+ +++||||||||.||| .+..+
T Consensus 141 --------lKVV~PStpyDAKGLL~aAIr--d~dPViflE~k~lY~~~~~eV 182 (324)
T COG0022 141 --------LKVVMPSTPYDAKGLLKAAIR--DPDPVIFLEHKRLYRSFKGEV 182 (324)
T ss_pred --------ceEEecCChHHHHHHHHHHhc--CCCCEEEEecHHHhcccccCC
Confidence 999999999999999999999 999999999999999 44443
No 19
>PRK12315 1-deoxy-D-xylulose-5-phosphate synthase; Provisional
Probab=100.00 E-value=1.9e-31 Score=315.56 Aligned_cols=385 Identities=13% Similarity=0.158 Sum_probs=270.4
Q ss_pred CCcEEe--cCCCCchHHHHHhhcCCCHHHHHHhhcCCCCCCCCCCCccCCCCcccccccccCCCCCCCceeeeeeccccC
Q 002323 287 VESIVI--GMPHRGRLNVLGNVVRKPLRQIFSEFSGGTKPVDEDGLYTGTGDVKYHLGTSYDRPTRGGKRIHLSLVANPS 364 (936)
Q Consensus 287 v~Divi--gM~HRgrlnvLa~vlg~p~~~ifaEf~G~~~~~~~G~~~ggsGDVkyHlG~s~~~~~~~g~~I~lsl~~NPS 364 (936)
.+|+++ . .||++++.|+. |.++..++.|.+|+.++.++++ +| .|-. ...+
T Consensus 62 ~~D~ii~d~-ghr~~~~~l~~--G~~~~~~~~~~~g~~~G~~~~~---~s----~~~~------------------~~~g 113 (581)
T PRK12315 62 PKDKIVWDV-SHQSYPHKMLT--GRKEAFLDPDHYDDVTGYTNPE---ES----EHDF------------------FTVG 113 (581)
T ss_pred CCCcEEEec-CCchHHHHHHc--CCccchhhHHHcCCCCCCCCCC---CC----CCCC------------------cCCC
Confidence 367766 6 89999999998 9999999999999999887753 22 1211 1236
Q ss_pred CCccccceeechhHHHHHhcCCCCCCceEEEEEecCcccCCCchHHHhhhcc---CCCCCccccEEEEEEeCCcccccCC
Q 002323 365 HLEAVDPVVVGKTRAKQYYSHDVDRTKNMGVLIHGDGSFAGQGVVYETLHLS---ALPNYTTGGTIHIVVNNQVAFTTDP 441 (936)
Q Consensus 365 HLeav~PVa~G~ArA~q~~~~d~~~~~~v~v~~hGDgA~sGQGvv~EtLNlA---~LP~Y~~GGtIhIV~NNQigfTT~~ 441 (936)
|++++.|+|+|.|+|.++++.+ ..++|++|||+++ +|.+||+||+| ++| +|+||.||+++++++.
T Consensus 114 ~~~~~ls~A~G~A~A~k~~~~~-----~~vv~~iGDG~~~-eG~~~EAln~A~~~k~~------li~Ii~dN~~si~~~~ 181 (581)
T PRK12315 114 HTSTSIALATGLAKARDLKGEK-----GNIIAVIGDGSLS-GGLALEGLNNAAELKSN------LIIIVNDNQMSIAENH 181 (581)
T ss_pred cHHHHHHHHHHHHHHHHhcCCC-----CeEEEEECchhhh-cchHHHHHHHHHhhCCC------EEEEEECCCCcCCCCC
Confidence 7899999999999999998765 7899999999999 99999999999 899 9999999999999876
Q ss_pred CCC-------CCc-------chh--------h-H-----HHHHHHHHHHHHHHccCCCEEEEEEeeecCCCCCCCCCCCC
Q 002323 442 RAG-------RSS-------QYC--------T-D-----AVVHVCELAAEWRQKFHSDVVVDLVCYRRFGHNEIDEPSFT 493 (936)
Q Consensus 442 ~~~-------rss-------~y~--------t-D-----AV~~a~~~A~e~rr~f~~pvlIdlv~YRr~GHne~Ddp~yt 493 (936)
... +.+ .+. - | ++++|++.| ++.++|++|++.|||-.|....
T Consensus 182 ~~~~~~l~~~~~~~~~~~~~~~~a~G~~~~~v~DG~D~~~l~~a~~~a----~~~~gP~~i~~~T~kG~G~~~~------ 251 (581)
T PRK12315 182 GGLYKNLKELRDTNGQSENNLFKAMGLDYRYVEDGNDIESLIEAFKEV----KDIDHPIVLHIHTLKGKGYQPA------ 251 (581)
T ss_pred chhhhhhhhhhhcccccHHHHHHhcCCeEEEeeCCCCHHHHHHHHHHH----HhCCCCEEEEEEeecCCCCChh------
Confidence 311 111 010 1 3 777777765 4578999999999999984311
Q ss_pred CHHHHHHHHcCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhhhcCCCccchhhhhccCCCCcccccccCC
Q 002323 494 QPKMYQVIRSHPSAFEIYQKKLLESAQVTQEDINRIQEKVNTILNEEFMASKDYVPKRRDWLSAYWAGFKSPEQVSRIRN 573 (936)
Q Consensus 494 qp~~y~~i~~~~dpl~~y~~~Li~eGilt~eei~~i~~~~~~~l~~a~~~A~~~~p~~~~~~~~~w~~~~~~~~~~~~~~ 573 (936)
.+.-+.|. ..+|.+ .+. .. +.. ..|
T Consensus 252 -~~~~~~~h-~~~~f~-------------~~~--------------------~~-~~~-----~~~-------------- 276 (581)
T PRK12315 252 -EENKEAFH-WHMPFD-------------LET--------------------GQ-SKV-----PAS-------------- 276 (581)
T ss_pred -hcCHHhcC-CCCCCC-------------ccc--------------------Cc-ccC-----CCC--------------
Confidence 00111221 111100 000 00 000 000
Q ss_pred CCCChHHHHHHHHHhccCCCCCCchhHHHHHHHHHHHHHhcCCcccHHHHHHHHhhhhhhcCCcEEEecccCCCcccccc
Q 002323 574 TGVKPEILKNVGKAITNLPENFKPHRGVKKVYEQRAQMIETGEGIDWAVGEALAFATLLVEGNHVRLSGQDVERGTFSHR 653 (936)
Q Consensus 574 Tgv~~~~l~~i~~~~~~~P~~f~~h~~l~r~l~~R~~~~~~~~~iDWa~aE~LAfgsLl~eg~~Vrl~GqDv~rGtF~~R 653 (936)
... ..+ +++++ +..++.++.+|.+.++|... .+.
T Consensus 277 ---~~~---------------------~~~-----------------~~~~~--l~~~~~~d~~i~~i~~~~~~-~~~-- 310 (581)
T PRK12315 277 ---GES---------------------YSS-----------------VTLDY--LLKKIKEGKPVVAINAAIPG-VFG-- 310 (581)
T ss_pred ---CcC---------------------HHH-----------------HHHHH--HHHHhccCCCEEEEeCcccc-ccC--
Confidence 000 000 01112 12345678889999998743 222
Q ss_pred cceeeecCCCceeecCCCCcccCCCcceEEEccCcchhHHHHHHhhhccCCCCcceeeeccchhhhhhHHHHHHHHHhhh
Q 002323 654 HSVLHDQETGEKYCPLDHVMMNQDEEMFTVSNSSLSEFGVLGFELGYSMENPNSLVLWEAQFGDFANGAQVIFDQFLSSG 733 (936)
Q Consensus 654 Havl~dq~t~~~y~pL~~l~~~~~~g~~rV~nspLSE~avlG~e~G~sl~g~~~LviwEaqFgDF~n~Aq~iidqfi~~~ 733 (936)
++.+. +++ +.|++|++|+|.+++|++.|+|+.|.+| ++ ++|.+|+..| +||.+...
T Consensus 311 ---------------~~~f~--~~f-P~R~id~GIaEq~~v~~AaGlA~~G~~P--vv-~~fs~Fl~ra---~dQi~~d~ 366 (581)
T PRK12315 311 ---------------LKEFR--KKY-PDQYVDVGIAEQESVAFASGIAANGARP--VI-FVNSTFLQRA---YDQLSHDL 366 (581)
T ss_pred ---------------cHHHH--Hhc-cccccCCCchHHHHHHHHHHHHHCcCeE--EE-EeeHHHHHHH---HHHHHHHH
Confidence 25666 565 6899999999999999999999999999 66 9999998766 78876543
Q ss_pred hhhhcCccccEEEcCccC-CCCCccccCchhhhhhhcCCCCCCcccCCCchhhhhccccceEEEEcCCHHHHHHHHHHHH
Q 002323 734 ESKWLRQTGLVVLLPHGY-DGQGPEHSSARLERFLQMSDDNPFVIPEMDPTLRKQIQECNWQIVNVTTPANYFHVLRRQI 812 (936)
Q Consensus 734 ~~kw~~~s~lv~~lPhG~-~G~GpeHSs~RiERfLQl~~~~~~~~~~~pg~~~~~~~~~N~~Vv~pstpa~~fhlLrrq~ 812 (936)
++ .+.|++++.+|+. .|.||.|+.. +|.+++.++|| |+|+.|++|.++.++|+.++
T Consensus 367 -a~--~~lpv~~~~~~~g~~~dG~TH~~~----------~Dia~lr~iPn----------l~V~~P~d~~e~~~~l~~a~ 423 (581)
T PRK12315 367 -AI--NNNPAVMIVFGGSISGNDVTHLGI----------FDIPMISNIPN----------LVYLAPTTKEELIAMLEWAL 423 (581)
T ss_pred -Hh--cCCCEEEEEECCcccCCCcccccc----------HHHHHHhcCCC----------CEEEecCCHHHHHHHHHHHH
Confidence 22 3689999999876 5579999876 34467789995 99999999999999999998
Q ss_pred hcCCCCcEEEEccccccCCCCCCCCcccccccCCCCCCCCCCCceeEeecCCCCCCCCCCCccEEEEeCchhHHHHHHhh
Q 002323 813 HRGFRKPLIVISPKNLLRHKDCKSNLSEFDDVQGHPGFDKQGTRFKRLIKDQNGHSDLEEGIRRLVLCSGKVFITSLMKG 892 (936)
Q Consensus 813 ~r~~~~Pli~~~pK~Llr~~~~~S~l~ef~~~~~~~~~~~pg~~F~~vi~d~~~~~~~~~~v~rvilcsGkvyydL~~~r 892 (936)
.. .+.|++|..||..+...... .++|.. +.. .|+.+ .+ +-.|+|+|-..+..+++.
T Consensus 424 ~~-~~gP~~ir~~r~~~~~~~~~--~~~~~~-----------~k~-~v~~~-------g~--dvtiia~G~~v~~Al~Aa 479 (581)
T PRK12315 424 TQ-HEHPVAIRVPEHGVESGPTV--DTDYST-----------LKY-EVTKA-------GE--KVAILALGDFYELGEKVA 479 (581)
T ss_pred hC-CCCcEEEEEcCCccCCCCCC--ccCccc-----------ceE-EEEec-------CC--CEEEEEEchHHHHHHHHH
Confidence 71 36899999999987643211 123432 211 23332 12 359999999888777765
Q ss_pred c
Q 002323 893 G 893 (936)
Q Consensus 893 ~ 893 (936)
+
T Consensus 480 ~ 480 (581)
T PRK12315 480 K 480 (581)
T ss_pred H
Confidence 4
No 20
>KOG0525 consensus Branched chain alpha-keto acid dehydrogenase E1, beta subunit [Energy production and conversion]
Probab=99.96 E-value=3.9e-30 Score=265.86 Aligned_cols=164 Identities=26% Similarity=0.351 Sum_probs=145.1
Q ss_pred hhcCCcEEEecccCCC-cccccccceeeecCCCceeecCCCCcccCCCcceEEEccCcchhHHHHHHhhhccCCCCccee
Q 002323 632 LVEGNHVRLSGQDVER-GTFSHRHSVLHDQETGEKYCPLDHVMMNQDEEMFTVSNSSLSEFGVLGFELGYSMENPNSLVL 710 (936)
Q Consensus 632 l~eg~~Vrl~GqDv~r-GtF~~RHavl~dq~t~~~y~pL~~l~~~~~~g~~rV~nspLSE~avlG~e~G~sl~g~~~Lvi 710 (936)
|..+..-.++||||+- |+|.+ | .+|. ++||+.||+||||+|.+|+||++|.+..|.+. |
T Consensus 55 l~tdp~a~vfgedv~fggvfrc---------t-------~gl~--~kfgk~rvfntplceqgivgfgig~aa~g~~a--i 114 (362)
T KOG0525|consen 55 LETDPRAVVFGEDVAFGGVFRC---------T-------TGLA--EKFGKDRVFNTPLCEQGIVGFGIGLAAMGATA--I 114 (362)
T ss_pred hhcCCceEEeccccccceEEEe---------e-------cchH--HHhCccccccCchhhcccceechhhhhcccce--E
Confidence 4456788899999997 99999 8 8999 99999999999999999999999999999999 9
Q ss_pred eeccchhhhhhHHHHHHHHHhhhhhhhcCcc-------ccEEEcCccCCCCC-ccccCchhhhhhhcCCCCCCcccCCCc
Q 002323 711 WEAQFGDFANGAQVIFDQFLSSGESKWLRQT-------GLVVLLPHGYDGQG-PEHSSARLERFLQMSDDNPFVIPEMDP 782 (936)
Q Consensus 711 wEaqFgDF~n~Aq~iidqfi~~~~~kw~~~s-------~lv~~lPhG~~G~G-peHSs~RiERfLQl~~~~~~~~~~~pg 782 (936)
.|+||+||.+.| +||+++.+ +|++++| +|+++.|+|..|.| -.|||+ .| +.|.|+||
T Consensus 115 aeiqfadyifpa---fdqivnea-akfryrsgnqfncg~ltir~p~gavghg~~yhsqs---------pe--aff~h~pg 179 (362)
T KOG0525|consen 115 AEIQFADYIFPA---FDQIVNEA-AKFRYRSGNQFNCGGLTIRAPWGAVGHGALYHSQS---------PE--AFFCHVPG 179 (362)
T ss_pred EEEeeccccchh---HHHHHHHH-HhheeccCCccccCceEEeccccccccccccccCC---------ch--hheecCCC
Confidence 999999999999 77777544 7888765 49999999998875 679988 33 57889999
Q ss_pred hhhhhccccceEEEEcCCHHHHHHHHHHHHhcCCCCcEEEEccccccCCCCCCCCccccc
Q 002323 783 TLRKQIQECNWQIVNVTTPANYFHVLRRQIHRGFRKPLIVISPKNLLRHKDCKSNLSEFD 842 (936)
Q Consensus 783 ~~~~~~~~~N~~Vv~pstpa~~fhlLrrq~~r~~~~Pli~~~pK~Llr~~~~~S~l~ef~ 842 (936)
+|||.|.+|-|++|||.++|+ +.||+|||+||+|||...+-.|.+|+.
T Consensus 180 ----------ikvviprsp~qakglllscir--dpnp~iffepk~lyr~a~edvp~~dy~ 227 (362)
T KOG0525|consen 180 ----------IKVVIPRSPRQAKGLLLSCIR--DPNPCIFFEPKILYRQAVEDVPEGDYM 227 (362)
T ss_pred ----------ceEEecCCcchhhceeeeecc--CCCceEEechHHHHHHhhhhCCCCCcc
Confidence 999999999999999999999 999999999999999776656666654
No 21
>TIGR00204 dxs 1-deoxy-D-xylulose-5-phosphate synthase. DXP synthase is a thiamine diphosphate-dependent enzyme related to transketolase and the pyruvate dehydrogenase E1-beta subunit. By an acyloin condensation of pyruvate with glyceraldehyde 3-phosphate, it produces 1-deoxy-D-xylulose 5-phosphate, a precursor of thiamine diphosphate (TPP), pyridoxal phosphate, and the isoprenoid building block isopentenyl diphosphate (IPP).
Probab=99.94 E-value=1.2e-25 Score=268.04 Aligned_cols=342 Identities=15% Similarity=0.195 Sum_probs=231.3
Q ss_pred cccCCCccccceeechhHHHHHhcCCCCCCceEEEEEecCcccCCCchHHHhhhcc---CCCCCccccEEEEEEeCCccc
Q 002323 361 ANPSHLEAVDPVVVGKTRAKQYYSHDVDRTKNMGVLIHGDGSFAGQGVVYETLHLS---ALPNYTTGGTIHIVVNNQVAF 437 (936)
Q Consensus 361 ~NPSHLeav~PVa~G~ArA~q~~~~d~~~~~~v~v~~hGDgA~sGQGvv~EtLNlA---~LP~Y~~GGtIhIV~NNQigf 437 (936)
.++.|++...|+|+|.|+|.++++.+ ..++|+.|||+++ +|.+||+||+| +|| .|+||.||++++
T Consensus 108 ~~~G~~g~~ls~a~G~A~a~~~~~~~-----~~v~~~~GDG~~~-eG~~~Ea~~~a~~~~l~------~i~ii~~N~~~i 175 (617)
T TIGR00204 108 FSAGHSSTSISAGLGIAVAAEKKGAD-----RKTVCVIGDGAIT-AGMAFEALNHAGDLKTD------MIVILNDNEMSI 175 (617)
T ss_pred cCCCchHhHHHHHHHHHHHHHhhCCC-----CEEEEEECCcccc-cccHHHHHHHHHhcCCC------EEEEEECCCccc
Confidence 46788999999999999999998765 7999999999999 99999999999 999 999999999999
Q ss_pred ccCCCCCC-------Cc-----------------------------------------------chh--hH-----HHHH
Q 002323 438 TTDPRAGR-------SS-----------------------------------------------QYC--TD-----AVVH 456 (936)
Q Consensus 438 TT~~~~~r-------ss-----------------------------------------------~y~--tD-----AV~~ 456 (936)
+++..... .+ .|. -| +++.
T Consensus 176 ~~~~~~~~~~l~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~f~~~G~~~~~~vDGhd~~~l~~ 255 (617)
T TIGR00204 176 SENVGALSNHLAQLRSGSLYQSLRDGLKKIFSKLPPIKNYLAKRTEESMKGLVVPGTFFEELGFNYIGPVDGHDLLELIE 255 (617)
T ss_pred CCCchHHHHHHHHhhccchHHHHHHHHHHHHhcCcchhHHHHHHHHHhhhhccCccchHHHcCCcEEcccCCCCHHHHHH
Confidence 98764220 00 011 13 5555
Q ss_pred HHHHHHHHHHccCCCEEEEEEeeecCCCCCCCCCCCCCHHHHHHHHcCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHHH
Q 002323 457 VCELAAEWRQKFHSDVVVDLVCYRRFGHNEIDEPSFTQPKMYQVIRSHPSAFEIYQKKLLESAQVTQEDINRIQEKVNTI 536 (936)
Q Consensus 457 a~~~A~e~rr~f~~pvlIdlv~YRr~GHne~Ddp~ytqp~~y~~i~~~~dpl~~y~~~Li~eGilt~eei~~i~~~~~~~ 536 (936)
+.+ .++..++|++|.+.|.+-.|-... + .+|.. |. ++.
T Consensus 256 al~----~ak~~~~P~~i~~~T~KGkG~~~~--------e--------~~~~~-~H------~~~--------------- 293 (617)
T TIGR00204 256 TLK----NAKKLKGPVFLHIQTKKGKGYKPA--------E--------KDPIG-WH------GVG--------------- 293 (617)
T ss_pred HHH----HHhcCCCCEEEEEEecCCCCCchh--------h--------cChhh-cc------CCC---------------
Confidence 444 455667899999999887772211 0 11111 00 000
Q ss_pred HHHHHHHhhhcCCCccchhhhhccCCCCcccccccCCCCCChHHHHHHHHHhccCCCCCCchhHHHHHHHHHHHHHhcCC
Q 002323 537 LNEEFMASKDYVPKRRDWLSAYWAGFKSPEQVSRIRNTGVKPEILKNVGKAITNLPENFKPHRGVKKVYEQRAQMIETGE 616 (936)
Q Consensus 537 l~~a~~~A~~~~p~~~~~~~~~w~~~~~~~~~~~~~~Tgv~~~~l~~i~~~~~~~P~~f~~h~~l~r~l~~R~~~~~~~~ 616 (936)
++++.. .+ .+.+. .+ .....+
T Consensus 294 -----------~~~~~~----~~--~~~~~------~~--~~~~~~---------------------------------- 314 (617)
T TIGR00204 294 -----------PFDLST----GC--LPKSK------SA--LPSYSK---------------------------------- 314 (617)
T ss_pred -----------CCChhh----CC--cCCCC------CC--CccHHH----------------------------------
Confidence 000000 00 00000 00 000001
Q ss_pred cccHHHHHHHHhhhhhhcCCcEEEecccCCCcccccccceeeecCCCceeecCCCCcccCCCcceEEEccCcchhHHHHH
Q 002323 617 GIDWAVGEALAFATLLVEGNHVRLSGQDVERGTFSHRHSVLHDQETGEKYCPLDHVMMNQDEEMFTVSNSSLSEFGVLGF 696 (936)
Q Consensus 617 ~iDWa~aE~LAfgsLl~eg~~Vrl~GqDv~rGtF~~RHavl~dq~t~~~y~pL~~l~~~~~~g~~rV~nspLSE~avlG~ 696 (936)
+++++|. .++.++.+|.+...|...++ + ++++. ++| +.|++|++|+|.+++|+
T Consensus 315 ----a~~~~L~--~~~~~d~~iv~i~ad~~~~~-------------~-----~~~f~--~~f-P~R~~d~GIaEq~~vg~ 367 (617)
T TIGR00204 315 ----IFSDTLC--ELAKKDNKIVGITPAMPEGS-------------G-----LDKFS--RKF-PDRYFDVAIAEQHAVTF 367 (617)
T ss_pred ----HHHHHHH--HHHhhCcCEEEEECCccCCc-------------C-----hHHHH--HHC-ccccccCCccHHHHHHH
Confidence 1222222 34566788888888874332 1 36777 677 89999999999999999
Q ss_pred HhhhccCCCCcceeeeccchhhhhhHHHHHHHHHhhhhhhhcCccccEEEcCcc-CCCC-CccccCchhhhhhhcCCCCC
Q 002323 697 ELGYSMENPNSLVLWEAQFGDFANGAQVIFDQFLSSGESKWLRQTGLVVLLPHG-YDGQ-GPEHSSARLERFLQMSDDNP 774 (936)
Q Consensus 697 e~G~sl~g~~~LviwEaqFgDF~n~Aq~iidqfi~~~~~kw~~~s~lv~~lPhG-~~G~-GpeHSs~RiERfLQl~~~~~ 774 (936)
+.|+|+.|.+| |+++ |++|+.-| +||++.... + ...|++++.+|+ +.|. ||.||+. +|.
T Consensus 368 AaGlA~~G~~P--vv~~-~a~Fl~ra---~dQi~~~~a-~--~~lpV~i~~~~~G~~g~dG~tH~~~----------~di 428 (617)
T TIGR00204 368 AAGMAIEGYKP--FVAI-YSTFLQRA---YDQVVHDVC-I--QKLPVLFAIDRAGIVGADGETHQGA----------FDI 428 (617)
T ss_pred HHHHHHCCCEE--EEEe-cHHHHHHH---HHHHHHHHH-h--cCCCEEEEEECCCcCCCCCcccccc----------hHH
Confidence 99999999999 8898 99999766 777655432 2 358999999964 5555 9999976 334
Q ss_pred CcccCCCchhhhhccccceEEEEcCCHHHHHHHHHHHHhcCCCCcEEEEccccccCCCCCCCCcccccccCCCCCCCCCC
Q 002323 775 FVIPEMDPTLRKQIQECNWQIVNVTTPANYFHVLRRQIHRGFRKPLIVISPKNLLRHKDCKSNLSEFDDVQGHPGFDKQG 854 (936)
Q Consensus 775 ~~~~~~pg~~~~~~~~~N~~Vv~pstpa~~fhlLrrq~~r~~~~Pli~~~pK~Llr~~~~~S~l~ef~~~~~~~~~~~pg 854 (936)
.++.++|| |+|+.|++|+|++++|+.++. ..+.|++|..||..+...........| |-
T Consensus 429 a~lr~iPg----------l~V~~Psd~~e~~~~l~~a~~-~~~~Pv~ir~~r~~~~~~~~~~~~~~~-----------~~ 486 (617)
T TIGR00204 429 SYLRCIPN----------MVIMAPSDENELRQMLYTGYH-YDDGPIAVRYPRGNAVGVELTPEPEKL-----------PI 486 (617)
T ss_pred HHHhcCCC----------cEEEeeCCHHHHHHHHHHHHh-CCCCCEEEEEccCCcCCcccCCccccc-----------cC
Confidence 67889996 999999999999999999997 234899999999776321110001112 22
Q ss_pred CceeEeecCCCCCCCCCCCccEEEEeCchhHHHHHHhhc
Q 002323 855 TRFKRLIKDQNGHSDLEEGIRRLVLCSGKVFITSLMKGG 893 (936)
Q Consensus 855 ~~F~~vi~d~~~~~~~~~~v~rvilcsGkvyydL~~~r~ 893 (936)
|..+ |+.+. + +-+|+++|-..+..+++.+
T Consensus 487 Gk~~-vlr~G-------~--dvtIva~G~~v~~al~Aa~ 515 (617)
T TIGR00204 487 GKSE-VLRKG-------E--KILILGFGTLVPEALEVAE 515 (617)
T ss_pred CceE-EEEcC-------C--CEEEEEcCHHHHHHHHHHH
Confidence 4443 33321 2 3499999999988877654
No 22
>PRK05899 transketolase; Reviewed
Probab=99.93 E-value=6.8e-24 Score=253.75 Aligned_cols=379 Identities=14% Similarity=0.156 Sum_probs=234.6
Q ss_pred cccCCCccccceeechhHHHHHhcCCC-----CCCceEEEEEecCcccCCCchHHHhhhcc---CCCCCccccEEEEEEe
Q 002323 361 ANPSHLEAVDPVVVGKTRAKQYYSHDV-----DRTKNMGVLIHGDGSFAGQGVVYETLHLS---ALPNYTTGGTIHIVVN 432 (936)
Q Consensus 361 ~NPSHLeav~PVa~G~ArA~q~~~~d~-----~~~~~v~v~~hGDgA~sGQGvv~EtLNlA---~LP~Y~~GGtIhIV~N 432 (936)
+..+|+|...|.|+|+|+|.++.+..- ...+..++|+.|||++. +|.++|+|+.| +|| =+|+||.|
T Consensus 115 ~~~G~lG~gl~~AiG~Ala~~~~~~~~~~~~~~~~~~~v~~v~GDG~~~-~g~~~Eal~~A~~~~L~-----~li~v~dn 188 (624)
T PRK05899 115 TTTGPLGQGLANAVGMALAEKYLAALFNRPGLDIVDHYTYVLCGDGDLM-EGISHEACSLAGHLKLG-----NLIVIYDD 188 (624)
T ss_pred eCCcchhhhHHHHHHHHHHHHHhhhhcCCccccCcCCeEEEEECcchhh-chHHHHHHHHHHHhCCC-----CEEEEEEC
Confidence 346789999999999999998765410 01137899999999998 99999999999 886 27888889
Q ss_pred CCcccccCCCCCCCcchhh---------------H--HHHHHHHHHHHHHHccCCCEEEEEEeeecCCCCCCCCC-CCCC
Q 002323 433 NQVAFTTDPRAGRSSQYCT---------------D--AVVHVCELAAEWRQKFHSDVVVDLVCYRRFGHNEIDEP-SFTQ 494 (936)
Q Consensus 433 NQigfTT~~~~~rss~y~t---------------D--AV~~a~~~A~e~rr~f~~pvlIdlv~YRr~GHne~Ddp-~ytq 494 (936)
|+++++++........+.. | ++..|.+.|. +.++|++|++.|+|-.||...+++ .|..
T Consensus 189 N~~~~~~~~~~~~~~~~~~~~~a~G~~~~~VdG~d~~~l~~al~~a~----~~~~P~vI~v~t~kg~g~~~~e~~~~~H~ 264 (624)
T PRK05899 189 NRISIDGPTEGWFTEDVKKRFEAYGWHVIEVDGHDVEAIDAAIEEAK----ASTKPTLIIAKTIIGKGAPNKEGTHKVHG 264 (624)
T ss_pred CCCcccccccccccccHHHHhccCCCeEEEECCCCHHHHHHHHHHHH----hcCCCEEEEEEeEeccCCccccCCCcccC
Confidence 9999988665332222211 1 6666666555 346899999999999999855433 3322
Q ss_pred ----HHHHHHHHcCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhhhcCCCccchhhhhccCCCCcccccc
Q 002323 495 ----PKMYQVIRSHPSAFEIYQKKLLESAQVTQEDINRIQEKVNTILNEEFMASKDYVPKRRDWLSAYWAGFKSPEQVSR 570 (936)
Q Consensus 495 ----p~~y~~i~~~~dpl~~y~~~Li~eGilt~eei~~i~~~~~~~l~~a~~~A~~~~p~~~~~~~~~w~~~~~~~~~~~ 570 (936)
+++++...+ +| + ++. +..++.+++. +.++.+.+.+.. ....|....
T Consensus 265 ~~~~~~~~~~~~~----------~l---~-~~~-~~~~~~~~~~----~~~~~~~~~~~~----~~~~~~~~~------- 314 (624)
T PRK05899 265 APLGAEEIAAAKK----------EL---G-WDY-EPFEVPEEVY----AHWRKAKERGAK----AEAEWNEKF------- 314 (624)
T ss_pred CCCCHHHHHHHHH----------Hc---C-CCc-ccccCChHHH----HHHHHhhhcCch----hHHHHHHhh-------
Confidence 233333221 11 1 111 1111111111 111111110000 001121000
Q ss_pred cCCCCCChHHHHHHHHHhccCCCCCCchhHHHHHHHHHHHHHhcCCcccHHHHHHHHhhhhhhcCCcEEEecccCCCccc
Q 002323 571 IRNTGVKPEILKNVGKAITNLPENFKPHRGVKKVYEQRAQMIETGEGIDWAVGEALAFATLLVEGNHVRLSGQDVERGTF 650 (936)
Q Consensus 571 ~~~Tgv~~~~l~~i~~~~~~~P~~f~~h~~l~r~l~~R~~~~~~~~~iDWa~aE~LAfgsLl~eg~~Vrl~GqDv~rGtF 650 (936)
. + +.+..| -+++++| ..++.++.+|++.++|+..+++
T Consensus 315 --~-~---------------------------~~~~~~-----------~a~~~~l--~~l~~~~~~v~vl~~D~~~~~~ 351 (624)
T PRK05899 315 --A-G---------------------------EKVATR-----------KASGKAL--NALAKALPELVGGSADLAGSNN 351 (624)
T ss_pred --c-c---------------------------cchHHH-----------HHHHHHH--HHHHhhCCCEEEEeCCCccccC
Confidence 0 0 000011 1222332 3556788999999999987766
Q ss_pred ccccceeeecCCCceeecCCCCcccCCCcceEEEccCcchhHHHHHHhhhccCC-CCcceeee--ccchhhhhhHHHHHH
Q 002323 651 SHRHSVLHDQETGEKYCPLDHVMMNQDEEMFTVSNSSLSEFGVLGFELGYSMEN-PNSLVLWE--AQFGDFANGAQVIFD 727 (936)
Q Consensus 651 ~~RHavl~dq~t~~~y~pL~~l~~~~~~g~~rV~nspLSE~avlG~e~G~sl~g-~~~LviwE--aqFgDF~n~Aq~iid 727 (936)
.. +. . .+.+. ++..+.|++|++|+|.+++|++.|+|+.| .+| |++ ++|.||+..
T Consensus 352 ~~---------~~---~-~~~f~--~~~~p~R~~d~GIaE~~~vg~A~GlA~~G~~~p--v~~t~~~F~~r~~~------ 408 (624)
T PRK05899 352 TK---------IK---G-SKDFA--PEDYSGRYIHYGVREFAMAAIANGLALHGGFIP--FGGTFLVFSDYARN------ 408 (624)
T ss_pred cc---------cc---c-ccccC--ccCCCCCeeeeChhHHHHHHHHHHHHHcCCCeE--EEEEcHHHHHHHHH------
Confidence 54 20 0 11122 12235899999999999999999999999 999 777 999888764
Q ss_pred HHHhhhhhhhcCccccEEEcCc-cC-CC-CCccccCchhhhhhhcCCCCCCcccCCCchhhhhccccceEEEEcCCHHHH
Q 002323 728 QFLSSGESKWLRQTGLVVLLPH-GY-DG-QGPEHSSARLERFLQMSDDNPFVIPEMDPTLRKQIQECNWQIVNVTTPANY 804 (936)
Q Consensus 728 qfi~~~~~kw~~~s~lv~~lPh-G~-~G-~GpeHSs~RiERfLQl~~~~~~~~~~~pg~~~~~~~~~N~~Vv~pstpa~~ 804 (936)
|+... .. ...|++++..| |+ .| .||.| ++ +| |..++.++|| |+|+.|++|.++
T Consensus 409 qir~~--~~--~~~pv~~v~~~~G~~~g~~G~tH-q~-~e--------dia~~r~iP~----------~~V~~P~d~~e~ 464 (624)
T PRK05899 409 AIRLA--AL--MKLPVIYVFTHDSIGVGEDGPTH-QP-VE--------QLASLRAIPN----------LTVIRPADANET 464 (624)
T ss_pred HHHHH--Hh--cCCCEEEEEECCCcCcCCCCCCc-cc-HH--------HHHHHHhCCC----------cEEEeCCCHHHH
Confidence 33221 11 34688888654 66 34 69999 66 55 3346778885 999999999999
Q ss_pred HHHHHHHHhcCC-CCcEEEEccccccCCCCCCCCcccccccCCCCCCCCCCCceeEeecCCCCCCCCCCCccEEEEeCch
Q 002323 805 FHVLRRQIHRGF-RKPLIVISPKNLLRHKDCKSNLSEFDDVQGHPGFDKQGTRFKRLIKDQNGHSDLEEGIRRLVLCSGK 883 (936)
Q Consensus 805 fhlLrrq~~r~~-~~Pli~~~pK~Llr~~~~~S~l~ef~~~~~~~~~~~pg~~F~~vi~d~~~~~~~~~~v~rvilcsGk 883 (936)
.++|+.++. . ++|++|..+|.-.......++.. ..+.|. .+|.+. . +-+|+++|-
T Consensus 465 ~~~l~~a~~--~~~~P~~ir~~r~~~~~~~~~~~~~-----------~~~~G~--~~l~~G-------~--dvtiia~G~ 520 (624)
T PRK05899 465 AAAWKYALE--RKDGPSALVLTRQNLPVLERTAQEE-----------GVAKGG--YVLRDD-------P--DVILIATGS 520 (624)
T ss_pred HHHHHHHHH--cCCCCEEEEEeCCCCCCcCCccccc-----------cccCCc--EEEecC-------C--CEEEEEeCH
Confidence 999999997 5 79999999864331110000001 123353 444431 1 248999999
Q ss_pred hHHHHHHhhc
Q 002323 884 VFITSLMKGG 893 (936)
Q Consensus 884 vyydL~~~r~ 893 (936)
.-+..+++.+
T Consensus 521 ~v~~al~Aa~ 530 (624)
T PRK05899 521 EVHLALEAAD 530 (624)
T ss_pred HHHHHHHHHH
Confidence 8888877654
No 23
>KOG0524 consensus Pyruvate dehydrogenase E1, beta subunit [Energy production and conversion]
Probab=99.92 E-value=6.3e-26 Score=238.04 Aligned_cols=158 Identities=18% Similarity=0.241 Sum_probs=142.6
Q ss_pred hhcCCcEEEecccCCC--cccccccceeeecCCCceeecCCCCcccCCCcceEEEccCcchhHHHHHHhhhccCCCCcce
Q 002323 632 LVEGNHVRLSGQDVER--GTFSHRHSVLHDQETGEKYCPLDHVMMNQDEEMFTVSNSSLSEFGVLGFELGYSMENPNSLV 709 (936)
Q Consensus 632 l~eg~~Vrl~GqDv~r--GtF~~RHavl~dq~t~~~y~pL~~l~~~~~~g~~rV~nspLSE~avlG~e~G~sl~g~~~Lv 709 (936)
|..+.+|+|.||+|+- |.|+. | ++|. ++||+.||+||||+|.|+.|.++|+|+.|.||
T Consensus 49 m~rD~~VfvmGEeV~qy~Gaykv---------t-------kGL~--~K~G~~RV~DTPItE~gFtG~avGAA~~GLrP-- 108 (359)
T KOG0524|consen 49 MDRDPRVFVMGEEVGQYGGAYKV---------T-------KGLL--DKFGDKRVLDTPITEMGFTGIAVGAAMAGLRP-- 108 (359)
T ss_pred hccCCcEEEechhhhhcCCeeeh---------h-------hhHH--HhcCCceeecCcchhcccchhhHhHHHhCcch--
Confidence 5789999999999985 88877 7 9999 99999999999999999999999999999999
Q ss_pred eeeccchhhhhhHHHHHHHHHhhhhhhhcC------ccccEEEcCccC-CCCCccccCchhhhhhhcCCCCCCcccCCCc
Q 002323 710 LWEAQFGDFANGAQVIFDQFLSSGESKWLR------QTGLVVLLPHGY-DGQGPEHSSARLERFLQMSDDNPFVIPEMDP 782 (936)
Q Consensus 710 iwEaqFgDF~n~Aq~iidqfi~~~~~kw~~------~s~lv~~lPhG~-~G~GpeHSs~RiERfLQl~~~~~~~~~~~pg 782 (936)
|.|.|--.|...| |||+|+|. +|-.+ .+|+|+|-|.|. .|.|+||||+ .+ .||.++||
T Consensus 109 i~efMtfnFsmqA---id~IiNsa-akt~YmSgG~~~~piVfRGPnG~~~gv~AqHSQ~-f~----------~wy~siPG 173 (359)
T KOG0524|consen 109 ICEFMTFNFSMQA---IDQIINSA-AKTHYMSGGQQPVPIVFRGPNGAAAGVAAQHSQD-FA----------SWYGSIPG 173 (359)
T ss_pred hhhhhcchhHHHH---HHHHHHHH-HHHhcccCCceeccEEEeCCCCcccchhhhhhhh-hH----------HHhccCCC
Confidence 9999999999887 99999876 45544 368999999998 7889999998 22 58889999
Q ss_pred hhhhhccccceEEEEcCCHHHHHHHHHHHHhcCCCCcEEEEccccccCCCCCCC
Q 002323 783 TLRKQIQECNWQIVNVTTPANYFHVLRRQIHRGFRKPLIVISPKNLLRHKDCKS 836 (936)
Q Consensus 783 ~~~~~~~~~N~~Vv~pstpa~~fhlLrrq~~r~~~~Pli~~~pK~Llr~~~~~S 836 (936)
+|||.|.||.|++|||+++|+ +.|||||+|+..||..+...+
T Consensus 174 ----------lkvvapysaedakGLlKaAIR--d~NPVV~lEnelLYg~~f~i~ 215 (359)
T KOG0524|consen 174 ----------LKVVAPYSAEDAKGLLKAAIR--DENPVVFLENELLYGLSFEIP 215 (359)
T ss_pred ----------ceEeccCChhhhhhHHHHhcc--CCCCeEEEechhhcCCCccCC
Confidence 999999999999999999999 999999999999998776643
No 24
>PRK05444 1-deoxy-D-xylulose-5-phosphate synthase; Provisional
Probab=99.91 E-value=2.3e-23 Score=247.32 Aligned_cols=352 Identities=16% Similarity=0.190 Sum_probs=234.0
Q ss_pred cccCCCccccceeechhHHHHHhcCCCCCCceEEEEEecCcccCCCchHHHhhhcc---CCCCCccccEEEEEEeCCccc
Q 002323 361 ANPSHLEAVDPVVVGKTRAKQYYSHDVDRTKNMGVLIHGDGSFAGQGVVYETLHLS---ALPNYTTGGTIHIVVNNQVAF 437 (936)
Q Consensus 361 ~NPSHLeav~PVa~G~ArA~q~~~~d~~~~~~v~v~~hGDgA~sGQGvv~EtLNlA---~LP~Y~~GGtIhIV~NNQigf 437 (936)
...+|||...|+|+|+|.|.++++. .+..++|+.|||++. +|.++|+|++| ++| +|+||.||++++
T Consensus 114 ~~~G~lG~gl~~AvG~A~a~~~~~~----~~~~v~~i~GDG~l~-eG~~~Eal~~A~~~~~n------li~IvdnN~~~i 182 (580)
T PRK05444 114 FGAGHSSTSISAALGMAKARDLKGG----EDRKVVAVIGDGALT-GGMAFEALNNAGDLKSD------LIVILNDNEMSI 182 (580)
T ss_pred ECCChHHHHHHHHHHHHHHHHhhCC----CCCeEEEEEcccccc-cCHHHHHHHHHHhhCCC------EEEEEECCCCcC
Confidence 4578899999999999999988732 126789999999998 99999999999 889 999999999998
Q ss_pred ccCCCCCC---Cc------------chh--hH-HHHHHHHHHHHHHHccCCCEEEEEEeeecCCCCCCC-CCCCCCHHHH
Q 002323 438 TTDPRAGR---SS------------QYC--TD-AVVHVCELAAEWRQKFHSDVVVDLVCYRRFGHNEID-EPSFTQPKMY 498 (936)
Q Consensus 438 TT~~~~~r---ss------------~y~--tD-AV~~a~~~A~e~rr~f~~pvlIdlv~YRr~GHne~D-dp~ytqp~~y 498 (936)
+++..... .. .+. .| --..+...|++.+++.++|++|++.|+|-.|..... ++.
T Consensus 183 ~~~~~~~~~~~~~~~~~~~~~a~G~~~~~~vdG~d~~~l~~al~~a~~~~~P~lI~~~T~kg~G~~~~e~~~~------- 255 (580)
T PRK05444 183 SPNVGALSNYLARLRSSTLFEELGFNYIGPIDGHDLDALIETLKNAKDLKGPVLLHVVTKKGKGYAPAEADPI------- 255 (580)
T ss_pred CCcchhhhhhhccccHHHHHHHcCCCeeeeeCCCCHHHHHHHHHHHHhCCCCEEEEEEecCCcCCChhhcCcc-------
Confidence 88764221 00 111 12 112233344445556689999999999988854321 110
Q ss_pred HHHHcCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhhhcCCCccchhhhhccCCCCcccccccCCCCCCh
Q 002323 499 QVIRSHPSAFEIYQKKLLESAQVTQEDINRIQEKVNTILNEEFMASKDYVPKRRDWLSAYWAGFKSPEQVSRIRNTGVKP 578 (936)
Q Consensus 499 ~~i~~~~dpl~~y~~~Li~eGilt~eei~~i~~~~~~~l~~a~~~A~~~~p~~~~~~~~~w~~~~~~~~~~~~~~Tgv~~ 578 (936)
.| |..| ..+++ . .... .+. .....
T Consensus 256 -~~--h~~~------------~~~~~-~------------------~~~~---------------~~~-------~~~~~ 279 (580)
T PRK05444 256 -KY--HGVG------------KFDPE-T------------------GEQP---------------KSS-------KPGKP 279 (580)
T ss_pred -cc--CCCC------------CCCcc-c------------------CCcc---------------ccC-------CCCcc
Confidence 01 1111 00000 0 0000 000 00000
Q ss_pred HHHHHHHHHhccCCCCCCchhHHHHHHHHHHHHHhcCCcccHHHHHHHHhhhhhhcCCcEEEecccCCCcccccccceee
Q 002323 579 EILKNVGKAITNLPENFKPHRGVKKVYEQRAQMIETGEGIDWAVGEALAFATLLVEGNHVRLSGQDVERGTFSHRHSVLH 658 (936)
Q Consensus 579 ~~l~~i~~~~~~~P~~f~~h~~l~r~l~~R~~~~~~~~~iDWa~aE~LAfgsLl~eg~~Vrl~GqDv~rGtF~~RHavl~ 658 (936)
+..+.++ ++ .-.++.++.+|.+.+.|...|+ ..
T Consensus 280 ~~~~~~~--------------------------------------~~--L~~~~~~~~~vv~~~adl~~~~-~~------ 312 (580)
T PRK05444 280 SYTKVFG--------------------------------------ET--LCELAEKDPKIVAITAAMPEGT-GL------ 312 (580)
T ss_pred cHHHHHH--------------------------------------HH--HHHHHhhCCCEEEEECCcCCCC-CH------
Confidence 0001111 11 1234567788998888975432 22
Q ss_pred ecCCCceeecCCCCcccCCCcceEEEccCcchhHHHHHHhhhccCCCCcceeeeccchhhhhhHHHHHHHHHhhhhhhhc
Q 002323 659 DQETGEKYCPLDHVMMNQDEEMFTVSNSSLSEFGVLGFELGYSMENPNSLVLWEAQFGDFANGAQVIFDQFLSSGESKWL 738 (936)
Q Consensus 659 dq~t~~~y~pL~~l~~~~~~g~~rV~nspLSE~avlG~e~G~sl~g~~~LviwEaqFgDF~n~Aq~iidqfi~~~~~kw~ 738 (936)
..+. +++ +.|++|++|+|.+++|++.|+|+.|.+| |++. |.+|+.-| +||.+.... +
T Consensus 313 -----------~~f~--~~~-p~R~i~~GIaE~~mvg~A~GlA~~G~~p--~~~~-f~~F~~ra---~dQi~~~~a-~-- 369 (580)
T PRK05444 313 -----------VKFS--KRF-PDRYFDVGIAEQHAVTFAAGLATEGLKP--VVAI-YSTFLQRA---YDQVIHDVA-L-- 369 (580)
T ss_pred -----------HHHH--HHh-hhhccCCChHHHHHHHHHHHHHHCCCee--EEEe-eHHHHHHH---HHHHHHHhh-h--
Confidence 2355 455 7899999999999999999999999998 8898 99998766 677665432 2
Q ss_pred CccccEEEcCcc-CCCC-CccccCchhhhhhhcCCCCCCcccCCCchhhhhccccceEEEEcCCHHHHHHHHHHHHhcCC
Q 002323 739 RQTGLVVLLPHG-YDGQ-GPEHSSARLERFLQMSDDNPFVIPEMDPTLRKQIQECNWQIVNVTTPANYFHVLRRQIHRGF 816 (936)
Q Consensus 739 ~~s~lv~~lPhG-~~G~-GpeHSs~RiERfLQl~~~~~~~~~~~pg~~~~~~~~~N~~Vv~pstpa~~fhlLrrq~~r~~ 816 (936)
...|++++.+|+ +.|. ||.|++. +|..++.++|| |+|+.|++|.+++.+|+.++.+ .
T Consensus 370 ~~~pv~~v~~~~G~~g~dG~tH~~~----------edia~lr~iP~----------l~V~~Psd~~e~~~~l~~a~~~-~ 428 (580)
T PRK05444 370 QNLPVTFAIDRAGLVGADGPTHQGA----------FDLSYLRCIPN----------MVIMAPSDENELRQMLYTALAY-D 428 (580)
T ss_pred cCCCEEEEEeCCCcCCCCCcccccc----------HHHHHHhcCCC----------CEEEeeCCHHHHHHHHHHHHhC-C
Confidence 368999999974 5544 9999966 34467889996 9999999999999999999962 4
Q ss_pred CCcEEEEccccccCCCCCCCCcccccccCCCCCCCCCCCceeEeecCCCCCCCCCCCccEEEEeCchhHHHHHHhhccc-
Q 002323 817 RKPLIVISPKNLLRHKDCKSNLSEFDDVQGHPGFDKQGTRFKRLIKDQNGHSDLEEGIRRLVLCSGKVFITSLMKGGRS- 895 (936)
Q Consensus 817 ~~Pli~~~pK~Llr~~~~~S~l~ef~~~~~~~~~~~pg~~F~~vi~d~~~~~~~~~~v~rvilcsGkvyydL~~~r~~~- 895 (936)
++|++|..+|.++.. .......+|. -|..+.+ .+. + +-.|+++|-..+..+++.++-
T Consensus 429 ~~P~~ir~~r~~~~~-~~~~~~~~~~-----------~Gk~~vl-~~G-------~--dvtIia~G~~v~~al~Aa~~L~ 486 (580)
T PRK05444 429 DGPIAIRYPRGNGVG-VELPELEPLP-----------IGKGEVL-REG-------E--DVAILAFGTMLAEALKAAERLA 486 (580)
T ss_pred CCcEEEEecCCCCCC-CCCCCccccc-----------CCceEEE-EcC-------C--CEEEEEccHHHHHHHHHHHHhC
Confidence 799999999988642 1111112222 1444333 221 2 348999999999888877654
Q ss_pred CCce
Q 002323 896 AVQV 899 (936)
Q Consensus 896 ~~~~ 899 (936)
.+.|
T Consensus 487 ~~~V 490 (580)
T PRK05444 487 SATV 490 (580)
T ss_pred CCEE
Confidence 3444
No 25
>PF02779 Transket_pyr: Transketolase, pyrimidine binding domain; InterPro: IPR005475 Transketolase 2.2.1.1 from EC (TK) catalyzes the reversible transfer of a two-carbon ketol unit from xylulose 5-phosphate to an aldose receptor, such as ribose 5-phosphate, to form sedoheptulose 7-phosphate and glyceraldehyde 3- phosphate. This enzyme, together with transaldolase, provides a link between the glycolytic and pentose-phosphate pathways. TK requires thiamine pyrophosphate as a cofactor. In most sources where TK has been purified, it is a homodimer of approximately 70 Kd subunits. TK sequences from a variety of eukaryotic and prokaryotic sources [, ] show that the enzyme has been evolutionarily conserved. In the peroxisomes of methylotrophic yeast Pichia angusta (Yeast) (Hansenula polymorpha), there is a highly related enzyme, dihydroxy-acetone synthase (DHAS) 2.2.1.3 from EC (also known as formaldehyde transketolase), which exhibits a very unusual specificity by including formaldehyde amongst its substrates. 1-deoxyxylulose-5-phosphate synthase (DXP synthase) [] is an enzyme so far found in bacteria (gene dxs) and plants (gene CLA1) which catalyzes the thiamine pyrophosphoate-dependent acyloin condensation reaction between carbon atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D- xylulose-5-phosphate (dxp), a precursor in the biosynthetic pathway to isoprenoids, thiamine (vitamin B1), and pyridoxol (vitamin B6). DXP synthase is evolutionary related to TK. The N-terminal section, contains a histidine residue which appears to function in proton transfer during catalysis []. In the central section there are conserved acidic residues that are part of the active cleft and may participate in substrate-binding []. This family includes transketolase enzymes 2.2.1.1 from EC and also partially matches to 2-oxoisovalerate dehydrogenase beta subunit P37941 from SWISSPROT 1.2.4.4 from EC. Both these enzymes utilise thiamine pyrophosphate as a cofactor, suggesting there may be common aspects in their mechanism of catalysis.; PDB: 2BFF_B 2BEV_B 1OLS_B 1V16_B 2BFD_B 1V1M_B 2BFC_B 1X80_B 1X7W_B 1OLX_B ....
Probab=99.91 E-value=2.3e-24 Score=219.63 Aligned_cols=176 Identities=23% Similarity=0.247 Sum_probs=148.9
Q ss_pred cccHHHHHHHHhhhhhhcCCcEEEecccCCCcccccccceeeecCCCceeecCCCCcccCCCcceEEEccCcchhHHHHH
Q 002323 617 GIDWAVGEALAFATLLVEGNHVRLSGQDVERGTFSHRHSVLHDQETGEKYCPLDHVMMNQDEEMFTVSNSSLSEFGVLGF 696 (936)
Q Consensus 617 ~iDWa~aE~LAfgsLl~eg~~Vrl~GqDv~rGtF~~RHavl~dq~t~~~y~pL~~l~~~~~~g~~rV~nspLSE~avlG~ 696 (936)
+++|..|-..|+..++.++.+|++.|+|++.|+|.. + .++. ..+|+.|++|++|+|.+++|+
T Consensus 2 k~~~~~a~~~~l~~~~~~d~~vv~~~~D~~~~~~~~---------~-------~~~~--~~~~~~r~i~~gIaE~~~vg~ 63 (178)
T PF02779_consen 2 KISMRDAFGEALAELAEEDPRVVVIGADLGGGTFGV---------T-------FGLA--FPFGPGRFINTGIAEQNMVGM 63 (178)
T ss_dssp EEEHHHHHHHHHHHHHHHTTTEEEEESSTHHHHTST---------T-------TTHH--BHHTTTTEEE--S-HHHHHHH
T ss_pred CccHHHHHHHHHHHHHhhCCCEEEEECCcCcchhhh---------h-------hhcc--ccCCCceEEecCcchhhccce
Confidence 589999999999999999999999999999999988 5 6666 556778999999999999999
Q ss_pred HhhhccCCC-CcceeeeccchhhhhhHHHHHHHHHhhhhhhhcCccccEEEcCccCCCCCccccCchhhhhhhcCCCCCC
Q 002323 697 ELGYSMENP-NSLVLWEAQFGDFANGAQVIFDQFLSSGESKWLRQTGLVVLLPHGYDGQGPEHSSARLERFLQMSDDNPF 775 (936)
Q Consensus 697 e~G~sl~g~-~~LviwEaqFgDF~n~Aq~iidqfi~~~~~kw~~~s~lv~~lPhG~~G~GpeHSs~RiERfLQl~~~~~~ 775 (936)
+.|+|+.|+ ++ +||.+|++|+..||......+......++...+++++.|.|+.+.|+.|++...+.+
T Consensus 64 a~GlA~~G~~~~--~~~~~f~~F~~~~q~r~~~~~~~~~~~~~~~v~v~~~~g~~~~~~G~tH~s~~d~~~--------- 132 (178)
T PF02779_consen 64 AAGLALAGGLRP--PVESTFADFLTPAQIRAFDQIRNDMAYGQLPVPVGTRAGLGYGGDGGTHHSIEDEAI--------- 132 (178)
T ss_dssp HHHHHHHSSSEE--EEEEEEGGGGGGGHHHHHHHHHHHHHHHTS-EEEEEEESGGGSTTGTTTSSSSHHHH---------
T ss_pred eeeeeecccccc--eeEeeccccccccchhhhhhhhhhhhcccceecceeecCcccccccccccccccccc---------
Confidence 999999995 55 999999999998877665556555677777777888999999888999987756654
Q ss_pred cccCCCchhhhhccccceEEEEcCCHHHHHHHHHHHHhcCCCCcEEEEccccccCCC
Q 002323 776 VIPEMDPTLRKQIQECNWQIVNVTTPANYFHVLRRQIHRGFRKPLIVISPKNLLRHK 832 (936)
Q Consensus 776 ~~~~~pg~~~~~~~~~N~~Vv~pstpa~~fhlLrrq~~r~~~~Pli~~~pK~Llr~~ 832 (936)
+.++|| |+|+.|+||+|++++||.++.++.++|++|++||.+|+|+
T Consensus 133 -~~~iPg----------~~v~~Psd~~e~~~~l~~a~~~~~~~P~~ir~~r~~~~~~ 178 (178)
T PF02779_consen 133 -LRSIPG----------MKVVVPSDPAEAKGLLRAAIRRESDGPVYIREPRGLYPHQ 178 (178)
T ss_dssp -HHTSTT----------EEEEE-SSHHHHHHHHHHHHHSSSSSEEEEEEESSEES-T
T ss_pred -cccccc----------cccccCCCHHHHHHHHHHHHHhCCCCeEEEEeeHHhCCCC
Confidence 456775 9999999999999999999998889999999999999986
No 26
>PLN02582 1-deoxy-D-xylulose-5-phosphate synthase
Probab=99.88 E-value=2.5e-21 Score=231.57 Aligned_cols=395 Identities=15% Similarity=0.153 Sum_probs=230.9
Q ss_pred cccCCCccccceeechhHHHHHhcCCCCCCceEEEEEecCcccCCCchHHHhhhcc---CCCCCccccEEEEEEeCCc-c
Q 002323 361 ANPSHLEAVDPVVVGKTRAKQYYSHDVDRTKNMGVLIHGDGSFAGQGVVYETLHLS---ALPNYTTGGTIHIVVNNQV-A 436 (936)
Q Consensus 361 ~NPSHLeav~PVa~G~ArA~q~~~~d~~~~~~v~v~~hGDgA~sGQGvv~EtLNlA---~LP~Y~~GGtIhIV~NNQi-g 436 (936)
....|++...++|+|.|+|+++++.+ ..+++++|||+++ +|.+||+||+| ++| +|+||.||+. .
T Consensus 141 ~~~G~~g~~ls~a~G~A~a~~~~~~~-----~~v~~viGDG~~~-~G~~~Ealn~a~~~~~~------li~iv~~N~~~s 208 (677)
T PLN02582 141 FGTGHSSTTISAGLGMAVGRDLKGKK-----NNVVAVIGDGAMT-AGQAYEAMNNAGYLDSD------MIVILNDNKQVS 208 (677)
T ss_pred eccchhhhhHHHHHHHHHHHHhcCCC-----CEEEEEecccccc-hhhHHHHHHHHHhhCcC------EEEEEECCCCcc
Confidence 45678999999999999999988765 7889999999999 99999999999 788 9999999985 4
Q ss_pred cccCCCCCCCc------chhhH----HHHHHHHHHHHHHHccCCCEEEEEEeeecCCCCCCCCCCCCCHHHHHHHHcC-C
Q 002323 437 FTTDPRAGRSS------QYCTD----AVVHVCELAAEWRQKFHSDVVVDLVCYRRFGHNEIDEPSFTQPKMYQVIRSH-P 505 (936)
Q Consensus 437 fTT~~~~~rss------~y~tD----AV~~a~~~A~e~rr~f~~pvlIdlv~YRr~GHne~Ddp~ytqp~~y~~i~~~-~ 505 (936)
+.|.+-++.+. .|-+. -.|.-.+..++..-+ +-| .+ -....+++++. +
T Consensus 209 ~~~~~~~s~~~~vg~~~~~l~~l~~~~~~~~~~~~~~~~~~-~~~-----------------~~---~~~~~~~~~~~~k 267 (677)
T PLN02582 209 LPTATLDGPAPPVGALSSALSRLQSSRPLRELREVAKGVTK-QIG-----------------GP---MHELAAKVDEYAR 267 (677)
T ss_pred ccccccCCCCCCccHHHHHHHHHhcchhHHHHHHHHHHHHH-hCc-----------------Hh---HHHHHHHHHHHhh
Confidence 43322222221 12211 223333333322221 101 00 00111222210 0
Q ss_pred ---CH--HHHHHHHHHH-cCCCCHHHHHHHHHHHHHHHHHHHHHhhhc---CCCccchhhhhccCCCCcccccccC--CC
Q 002323 506 ---SA--FEIYQKKLLE-SAQVTQEDINRIQEKVNTILNEEFMASKDY---VPKRRDWLSAYWAGFKSPEQVSRIR--NT 574 (936)
Q Consensus 506 ---dp--l~~y~~~Li~-eGilt~eei~~i~~~~~~~l~~a~~~A~~~---~p~~~~~~~~~w~~~~~~~~~~~~~--~T 574 (936)
.| ..+|++.=.. -|.++--++++ |.++++.+++. .|..-...+..=.++...+.....+ ..
T Consensus 268 ~~~~~~~~~~fe~~G~~y~g~iDGHd~~~--------L~~al~~~k~~~~~~P~vihv~T~KGkG~~~ae~~~~~~H~~~ 339 (677)
T PLN02582 268 GMISGSGSTLFEELGLYYIGPVDGHNIDD--------LVTILREVKSTKTTGPVLIHVVTEKGRGYPYAERAADKYHGVV 339 (677)
T ss_pred hccCccccchHHHcCCeEEeeeCCCCHHH--------HHHHHHHHHhcCCCCCEEEEEEecCCCCCChhhcChhhcCCCC
Confidence 01 0123222111 23334444443 44455555543 1321111111111111100000000 00
Q ss_pred CCChHHHHHHHHHhccCCCCCCchhHHHHHHHHHHHHHhcCCcccHHHHHHHHhhhhhhcCCcEEEecccCCCccccccc
Q 002323 575 GVKPEILKNVGKAITNLPENFKPHRGVKKVYEQRAQMIETGEGIDWAVGEALAFATLLVEGNHVRLSGQDVERGTFSHRH 654 (936)
Q Consensus 575 gv~~~~l~~i~~~~~~~P~~f~~h~~l~r~l~~R~~~~~~~~~iDWa~aE~LAfgsLl~eg~~Vrl~GqDv~rGtF~~RH 654 (936)
..+.++ ++.. + .......|..+=.-|.-.++.++.+|.+.++|.. |.|+.
T Consensus 340 ~f~~~~----g~~~---~--------------------~~~~~~~~s~a~~~aL~~~a~~d~~vv~ita~m~-g~~gl-- 389 (677)
T PLN02582 340 KFDPAT----GKQF---K--------------------VKAKTQSYTTYFAEALIAEAEVDKDVVAIHAAMG-GGTGL-- 389 (677)
T ss_pred CCCccc----CCcc---C--------------------CCCCCcCHHHHHHHHHHHHHccCCCEEEEeCCCC-Cccch--
Confidence 011000 0000 0 0011234544444444567889999999999974 33333
Q ss_pred ceeeecCCCceeecCCCCcccCCCcceEEEccCcchhHHHHHHhhhccCCCCcceeeeccchhhhhhHHHHHHHHHhhhh
Q 002323 655 SVLHDQETGEKYCPLDHVMMNQDEEMFTVSNSSLSEFGVLGFELGYSMENPNSLVLWEAQFGDFANGAQVIFDQFLSSGE 734 (936)
Q Consensus 655 avl~dq~t~~~y~pL~~l~~~~~~g~~rV~nspLSE~avlG~e~G~sl~g~~~LviwEaqFgDF~n~Aq~iidqfi~~~~ 734 (936)
..+. ++| +.|++|++|+|.+++|++.|+|+.|.+| |+++ |.+|..-| +||++....
T Consensus 390 ---------------~~f~--~~f-P~R~fdvGIAEq~~vg~AaGLA~~G~kP--vv~~-fs~Fl~RA---~DQI~~dva 445 (677)
T PLN02582 390 ---------------NLFA--RRF-PTRCFDVGIAEQHAVTFAAGLACEGLKP--FCAI-YSSFLQRG---YDQVVHDVD 445 (677)
T ss_pred ---------------HHHH--HHc-CccccccCcCHHHHHHHHHHHHHCCCeE--EEEe-cHHHHHHH---HHHHHHHHH
Confidence 4566 565 8999999999999999999999999999 8998 99998666 777765432
Q ss_pred hhhcCccccEEEcCc-cCCC-CCccccCchhhhhhhcCCCCCCcccCCCchhhhhccccceEEEEcCCHHHHHHHHHHHH
Q 002323 735 SKWLRQTGLVVLLPH-GYDG-QGPEHSSARLERFLQMSDDNPFVIPEMDPTLRKQIQECNWQIVNVTTPANYFHVLRRQI 812 (936)
Q Consensus 735 ~kw~~~s~lv~~lPh-G~~G-~GpeHSs~RiERfLQl~~~~~~~~~~~pg~~~~~~~~~N~~Vv~pstpa~~fhlLrrq~ 812 (936)
....|+|++++| |+.| .||.|++. +|-.++.++|| |+|+.|++|.+++++|+.++
T Consensus 446 ---l~~lpVv~v~~~aG~vg~dG~TH~~~----------~Dia~lr~iPn----------l~V~~Psd~~E~~~~l~~al 502 (677)
T PLN02582 446 ---LQKLPVRFAMDRAGLVGADGPTHCGA----------FDVTYMACLPN----------MVVMAPSDEAELFHMVATAA 502 (677)
T ss_pred ---hcCCCEEEEEECCCcccCCCCccccc----------HHHHHHhcCCC----------CEEEeeCCHHHHHHHHHHHH
Confidence 245899999997 4555 49999987 22245568996 99999999999999999999
Q ss_pred hcCCCCcEEEEccccccCCCCCCCCcccccccCCCCCCCCCCCceeEeecCCCCCCCCCCCccEEEEeCchhHHHHHHhh
Q 002323 813 HRGFRKPLIVISPKNLLRHKDCKSNLSEFDDVQGHPGFDKQGTRFKRLIKDQNGHSDLEEGIRRLVLCSGKVFITSLMKG 892 (936)
Q Consensus 813 ~r~~~~Pli~~~pK~Llr~~~~~S~l~ef~~~~~~~~~~~pg~~F~~vi~d~~~~~~~~~~v~rvilcsGkvyydL~~~r 892 (936)
.. .+.|++|..||.... +... +-++.. ...|-|.. .|+.+. + +-+|+++|...+..+++.
T Consensus 503 ~~-~~gPv~IR~pr~~~~-~~~~-~~~~~~-------~~~~iGk~-~vlr~G-------~--dvtIva~G~~v~~Al~Aa 562 (677)
T PLN02582 503 AI-DDRPSCFRYPRGNGI-GVQL-PPNNKG-------IPIEVGKG-RILLEG-------E--RVALLGYGTAVQSCLAAA 562 (677)
T ss_pred hC-CCCCEEEEEecCCCC-Cccc-CCcccc-------cccccCce-EEEEeC-------C--CEEEEeecHHHHHHHHHH
Confidence 62 458999999987521 1110 000000 00111333 333331 2 248999999999887765
Q ss_pred c
Q 002323 893 G 893 (936)
Q Consensus 893 ~ 893 (936)
+
T Consensus 563 ~ 563 (677)
T PLN02582 563 S 563 (677)
T ss_pred H
Confidence 4
No 27
>PRK12571 1-deoxy-D-xylulose-5-phosphate synthase; Provisional
Probab=99.87 E-value=1.2e-20 Score=226.19 Aligned_cols=192 Identities=15% Similarity=0.173 Sum_probs=138.3
Q ss_pred hhhhcCCcEEEecccCCCcccccccceeeecCCCceeecCCCCcccCCCcceEEEccCcchhHHHHHHhhhccCCCCcce
Q 002323 630 TLLVEGNHVRLSGQDVERGTFSHRHSVLHDQETGEKYCPLDHVMMNQDEEMFTVSNSSLSEFGVLGFELGYSMENPNSLV 709 (936)
Q Consensus 630 sLl~eg~~Vrl~GqDv~rGtF~~RHavl~dq~t~~~y~pL~~l~~~~~~g~~rV~nspLSE~avlG~e~G~sl~g~~~Lv 709 (936)
.++..+.+|.+.+.|...|+ .. +++. +++ +.|++|++|+|.+++|++.|+|+.|.+|
T Consensus 331 ~la~~d~~iv~isadl~~~~-~~-----------------~~f~--~~~-p~R~id~GIaE~~mvg~AaGlA~~G~~P-- 387 (641)
T PRK12571 331 KEAAEDSDIVAITAAMPLGT-GL-----------------DKLQ--KRF-PNRVFDVGIAEQHAVTFAAGLAAAGLKP-- 387 (641)
T ss_pred HHHhhCCCEEEEeCCccCCC-Ch-----------------HHHH--HhC-CCcccccCccHHHHHHHHHHHHHCCCEE--
Confidence 35677899999999986543 21 5566 566 7899999999999999999999999999
Q ss_pred eeeccchhhhhhHHHHHHHHHhhhhhhhcCccccEEEc-CccCCC-CCccccCchhhhhhhcCCCCCCcccCCCchhhhh
Q 002323 710 LWEAQFGDFANGAQVIFDQFLSSGESKWLRQTGLVVLL-PHGYDG-QGPEHSSARLERFLQMSDDNPFVIPEMDPTLRKQ 787 (936)
Q Consensus 710 iwEaqFgDF~n~Aq~iidqfi~~~~~kw~~~s~lv~~l-PhG~~G-~GpeHSs~RiERfLQl~~~~~~~~~~~pg~~~~~ 787 (936)
|+++ |.+|..-| +||++... +. ...|++++. ..|+.| .||.|++. +|..++.++||
T Consensus 388 ~v~~-f~~Fl~ra---~dQI~~~~-a~--~~lpv~~v~~~~G~~g~dG~THq~~----------~dia~lr~iPn----- 445 (641)
T PRK12571 388 FCAV-YSTFLQRG---YDQLLHDV-AL--QNLPVRFVLDRAGLVGADGATHAGA----------FDLAFLTNLPN----- 445 (641)
T ss_pred EEEe-hHHHHHHH---HHHHHHHH-hh--cCCCeEEEEECCCcCCCCCcccccc----------HHHHHHhcCCC-----
Confidence 8888 99999766 77765533 22 357888887 456654 49999986 23357788996
Q ss_pred ccccceEEEEcCCHHHHHHHHHHHHhcCCCCcEEEEccccccCCCCCCCCcccccccCCCCCCCCCCCceeEeecCCCCC
Q 002323 788 IQECNWQIVNVTTPANYFHVLRRQIHRGFRKPLIVISPKNLLRHKDCKSNLSEFDDVQGHPGFDKQGTRFKRLIKDQNGH 867 (936)
Q Consensus 788 ~~~~N~~Vv~pstpa~~fhlLrrq~~r~~~~Pli~~~pK~Llr~~~~~S~l~ef~~~~~~~~~~~pg~~F~~vi~d~~~~ 867 (936)
|+|+.|++|.+++++|+.++.. .+.|++|..||..+........-..+. -|.-+ |+.+.
T Consensus 446 -----l~V~~Psd~~e~~~~l~~a~~~-~~~P~~ir~~r~~~~~~~~~~~~~~~~-----------~gk~~-vlr~G--- 504 (641)
T PRK12571 446 -----MTVMAPRDEAELRHMLRTAAAH-DDGPIAVRFPRGEGVGVEIPAEGTILG-----------IGKGR-VPREG--- 504 (641)
T ss_pred -----CEEEeeCCHHHHHHHHHHHHhC-CCCcEEEEEecCcCCccccCCCCcccc-----------CceeE-EEecC---
Confidence 9999999999999999999862 379999999987652111000001111 12112 44331
Q ss_pred CCCCCCccEEEEeCchhHHHHHHhhc
Q 002323 868 SDLEEGIRRLVLCSGKVFITSLMKGG 893 (936)
Q Consensus 868 ~~~~~~v~rvilcsGkvyydL~~~r~ 893 (936)
. +-+|+++|...+..+++.+
T Consensus 505 ----~--ditIva~G~~v~~aleAa~ 524 (641)
T PRK12571 505 ----P--DVAILSVGAHLHECLDAAD 524 (641)
T ss_pred ----C--CEEEEEecHHHHHHHHHHH
Confidence 2 2489999999888877654
No 28
>cd07036 TPP_PYR_E1-PDHc-beta_like Pyrimidine (PYR) binding domain of the beta subunits of the E1 components of human pyruvate dehydrogenase complex (E1- PDHc) and related proteins. Thiamine pyrophosphate (TPP) family, pyrimidine (PYR) binding domain of the beta subunits of the E1 components of: human pyruvate dehydrogenase complex (E1- PDHc), the acetoin dehydrogenase complex (ADC), and the branched chain alpha-keto acid dehydrogenase/2-oxoisovalerate dehydrogenase complex (BCADC), subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. The PYR and PP domain
Probab=99.85 E-value=1.7e-21 Score=197.48 Aligned_cols=153 Identities=24% Similarity=0.382 Sum_probs=125.6
Q ss_pred hhhhcCCcEEEecccCCCcccccccceeeecCCCceeecCCCCcccCCCcceEEEccCcchhHHHHHHhhhccCCCCcce
Q 002323 630 TLLVEGNHVRLSGQDVERGTFSHRHSVLHDQETGEKYCPLDHVMMNQDEEMFTVSNSSLSEFGVLGFELGYSMENPNSLV 709 (936)
Q Consensus 630 sLl~eg~~Vrl~GqDv~rGtF~~RHavl~dq~t~~~y~pL~~l~~~~~~g~~rV~nspLSE~avlG~e~G~sl~g~~~Lv 709 (936)
.++.++.+|++.|+|+..+ |..|..++++. ++++..|++|++|+|..++|++.|+|+.|.+|
T Consensus 9 ~~~~~~~~vv~l~~D~~~~--------------~g~~~~~~~~~--~~~p~~R~~~~gIaEq~~vg~AaGlA~~G~~p-- 70 (167)
T cd07036 9 EEMERDPRVVVLGEDVGDY--------------GGVFKVTKGLL--DKFGPDRVIDTPIAEAGIVGLAVGAAMNGLRP-- 70 (167)
T ss_pred HHHhcCCCEEEECcccccC--------------CCcchHhHHHH--HhCCCceEEeCCCcHHHHHHHHHHHHHcCCEE--
Confidence 4577999999999999641 22233348898 78877799999999999999999999999988
Q ss_pred eeeccchhhhhhHHHHHHHHHhhh-hhhh----cCccccEEEcCccC-CCCCccccCchhhhhhhcCCCCCCcccCCCch
Q 002323 710 LWEAQFGDFANGAQVIFDQFLSSG-ESKW----LRQTGLVVLLPHGY-DGQGPEHSSARLERFLQMSDDNPFVIPEMDPT 783 (936)
Q Consensus 710 iwEaqFgDF~n~Aq~iidqfi~~~-~~kw----~~~s~lv~~lPhG~-~G~GpeHSs~RiERfLQl~~~~~~~~~~~pg~ 783 (936)
|||+||++|+..| +||+..+. -.+| +...|++++.++|. .+.|++||.. .|.+| .++||
T Consensus 71 i~~~~~a~Fl~ra---~dQi~~~~a~~~~~~~~~~~~pv~i~~~~gg~~~~G~ths~~-~~a~l----------r~iPg- 135 (167)
T cd07036 71 IVEIMFADFALPA---FDQIVNEAAKLRYMSGGQFKVPIVIRGPNGGGIGGGAQHSQS-LEAWF----------AHIPG- 135 (167)
T ss_pred EEEeehHHHHHHH---HHHHHHHHHHHHHhcCCCccCCEEEEEeCCCCCCcChhhhhh-HHHHH----------hcCCC-
Confidence 9999999998766 78876543 2334 23688999999887 5579999865 55544 46775
Q ss_pred hhhhccccceEEEEcCCHHHHHHHHHHHHhcCCCCcEEEEccc
Q 002323 784 LRKQIQECNWQIVNVTTPANYFHVLRRQIHRGFRKPLIVISPK 826 (936)
Q Consensus 784 ~~~~~~~~N~~Vv~pstpa~~fhlLrrq~~r~~~~Pli~~~pK 826 (936)
|+|++||+|.+++++||.++. .++|+||+|||
T Consensus 136 ---------~~V~~Psd~~e~~~~l~~~~~--~~~P~~~~e~k 167 (167)
T cd07036 136 ---------LKVVAPSTPYDAKGLLKAAIR--DDDPVIFLEHK 167 (167)
T ss_pred ---------CEEEeeCCHHHHHHHHHHHHh--CCCcEEEEecC
Confidence 999999999999999999998 67999999998
No 29
>TIGR00232 tktlase_bact transketolase, bacterial and yeast. This model is designed to capture orthologs of bacterial transketolases. The group includes two from the yeast Saccharomyces cerevisiae but excludes dihydroxyactetone synthases (formaldehyde transketolases) from various yeasts and the even more distant mammalian transketolases. Among the family of thiamine diphosphate-dependent enzymes that includes transketolases, dihydroxyacetone synthases, pyruvate dehydrogenase E1-beta subunits, and deoxyxylulose-5-phosphate synthases, mammalian and bacterial transketolases seem not to be orthologous.
Probab=99.85 E-value=3.3e-19 Score=214.20 Aligned_cols=417 Identities=13% Similarity=0.163 Sum_probs=237.5
Q ss_pred cccCCCccccceeechhHHHHHhcCC-----CCCCceEEEEEecCcccCCCchHHHhhhcc---CCCCCccccEEEEEEe
Q 002323 361 ANPSHLEAVDPVVVGKTRAKQYYSHD-----VDRTKNMGVLIHGDGSFAGQGVVYETLHLS---ALPNYTTGGTIHIVVN 432 (936)
Q Consensus 361 ~NPSHLeav~PVa~G~ArA~q~~~~d-----~~~~~~v~v~~hGDgA~sGQGvv~EtLNlA---~LP~Y~~GGtIhIV~N 432 (936)
...++||.+.|+|+|.|+|.|+.+.. ....+..++|+.|||+++ ||++||++|+| +|| -+|+||.|
T Consensus 107 ~~tG~lG~gl~~AvG~Ala~k~~~~~~~~~~~~~~~~~v~~~~GDG~l~-EG~~~EA~~~A~~~~L~-----nLi~ivd~ 180 (653)
T TIGR00232 107 ATTGPLGQGIANAVGMAIAQKTLAATFNKPGFEIVDHYTYVFVGDGCLQ-EGISYEVASLAGHLKLG-----KLIVLYDS 180 (653)
T ss_pred eCCcchhccHHHHHHHHHHHHHHhhhccCCccCCcCCEEEEEEcccccc-ccHHHHHHHHHHHhCCC-----cEEEEEeC
Confidence 44667999999999999999987431 112357899999999999 99999999999 888 35667999
Q ss_pred CCcccccCCCCCCCcchhh-------H--HH-----HHHHHHHHHHHHccC-CCEEEEEEeeecCCCC--CCCCC---CC
Q 002323 433 NQVAFTTDPRAGRSSQYCT-------D--AV-----VHVCELAAEWRQKFH-SDVVVDLVCYRRFGHN--EIDEP---SF 492 (936)
Q Consensus 433 NQigfTT~~~~~rss~y~t-------D--AV-----~~a~~~A~e~rr~f~-~pvlIdlv~YRr~GHn--e~Ddp---~y 492 (936)
|+|+++++.++........ + .| ..++..|++.+++.+ +|++|++.|+|-+|.+ |.... .-
T Consensus 181 N~~~i~~~~~~~~~~~~~~~~~a~Gw~~~~v~DG~D~~ai~~A~~~a~~~~~~P~~I~~~T~~g~G~~~~e~~~~~H~~~ 260 (653)
T TIGR00232 181 NRISIDGAVDGSFTEDVAKRFEAYGWEVLEVEDGHDLAAIDAAIEEAKASKDKPTLIEVTTTIGFGSPNKAGTHGVHGAP 260 (653)
T ss_pred CCeeeccccccccCccHHHHHHhcCCcEEEeCCCCCHHHHHHHHHHHHhCCCCCEEEEEEeeecccCcccCCCCcccCCC
Confidence 9999999987654322110 0 11 333445555556654 8999999999999985 32221 12
Q ss_pred CCHHHHHHHHcC----C-------CHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhhhcCCCccchhhhhccC
Q 002323 493 TQPKMYQVIRSH----P-------SAFEIYQKKLLESAQVTQEDINRIQEKVNTILNEEFMASKDYVPKRRDWLSAYWAG 561 (936)
Q Consensus 493 tqp~~y~~i~~~----~-------dpl~~y~~~Li~eGilt~eei~~i~~~~~~~l~~a~~~A~~~~p~~~~~~~~~w~~ 561 (936)
-.+++|+..++. . ++.+.|+..+.++| ++..+++.+.+++..++ .|.....+...+++
T Consensus 261 ~~~~~~~~~~~~l~~~~~~f~v~~~~~~~~~~~~~~~~---~~~~~~w~~~~~~~~~~--------~p~~~~~~~~~~~~ 329 (653)
T TIGR00232 261 LGDEDVKLTKKNLGWNYNPFEVPQEVYDHFQKTVKERG---AKAEQEWNELFAAYKKK--------YPELAAEFTRRLSG 329 (653)
T ss_pred CCHHHHHHHHHHhCCCCCCccCCHHHHHHHHHHHHhcc---HHHHHHHHHHHHHHHHH--------CHHHHHHHHHHHhc
Confidence 245555554321 1 12222322222222 11112222222211111 11110001110000
Q ss_pred CCCcccccccCCCCCChHHHHHHHHHhccCCCCCCchhHHHHHHHHHHHHHhcCCcccHHHHHHHHhhhhhhcCCcEEEe
Q 002323 562 FKSPEQVSRIRNTGVKPEILKNVGKAITNLPENFKPHRGVKKVYEQRAQMIETGEGIDWAVGEALAFATLLVEGNHVRLS 641 (936)
Q Consensus 562 ~~~~~~~~~~~~Tgv~~~~l~~i~~~~~~~P~~f~~h~~l~r~l~~R~~~~~~~~~iDWa~aE~LAfgsLl~eg~~Vrl~ 641 (936)
.++.+.... +|+ ++ . ..+-+..|. +++++|. .|..+..+|.+.
T Consensus 330 -------------~~p~~~~~~-------~~~-~~-~--~~~~~atR~-----------~~g~~L~--~la~~~p~iv~l 372 (653)
T TIGR00232 330 -------------ELPADWDKK-------LPE-FK-A--KLQALATRK-----------YSQNVLN--AIANVLPELLGG 372 (653)
T ss_pred -------------cCchhhhhh-------hhh-hh-c--cCcchHHHH-----------HHHHHHH--HHHhhCCCEEEE
Confidence 001000000 000 00 0 000011121 1222222 334556778777
Q ss_pred cccCCCcccccccceeeecCCCceeecCCCCcccCCCcceEEEccCcchhHHHHHHhhhcc-CCCCcceeeeccchhhhh
Q 002323 642 GQDVERGTFSHRHSVLHDQETGEKYCPLDHVMMNQDEEMFTVSNSSLSEFGVLGFELGYSM-ENPNSLVLWEAQFGDFAN 720 (936)
Q Consensus 642 GqDv~rGtF~~RHavl~dq~t~~~y~pL~~l~~~~~~g~~rV~nspLSE~avlG~e~G~sl-~g~~~LviwEaqFgDF~n 720 (936)
.-|+...+.... .++ ..+. +. .+.|.+|.-|+|.+.+|++.|+|+ .|.+|.+-.-++|.|++.
T Consensus 373 saDl~~s~~~~~------~~~-------~~f~--~~-~p~rfi~~GIaEq~mv~~AaGlA~~gG~~p~~~tf~~F~~r~~ 436 (653)
T TIGR00232 373 SADLAPSNLTKW------KGS-------GDLH--EN-PLGNYIHYGVREFAMGAIMNGIALHGGFKPYGGTFLMFVDYAR 436 (653)
T ss_pred eCCccccCCccc------ccc-------cchh--hc-CCCCeEeecccHHHHHHHHHHHHHcCCCeEEEEEhHHHHHHHH
Confidence 788743221110 000 1133 33 356899999999999999999999 678897666777777655
Q ss_pred hHHHHHHHHHhhhhhhhcCccccEEEcCc-cC--CCCCccccCchhhhhhhcCCCCCCcccCCCchhhhhccccceEEEE
Q 002323 721 GAQVIFDQFLSSGESKWLRQTGLVVLLPH-GY--DGQGPEHSSARLERFLQMSDDNPFVIPEMDPTLRKQIQECNWQIVN 797 (936)
Q Consensus 721 ~Aq~iidqfi~~~~~kw~~~s~lv~~lPh-G~--~G~GpeHSs~RiERfLQl~~~~~~~~~~~pg~~~~~~~~~N~~Vv~ 797 (936)
. |+-..+- ...|+++...| |+ ..-||.| |+ +| |..++..+|+ |+|+.
T Consensus 437 ~------~ir~~a~----~~lpV~~v~th~g~~~G~dG~TH-q~-ie--------dia~lr~iPn----------~~v~~ 486 (653)
T TIGR00232 437 P------AIRLAAL----MKLPVIYVYTHDSIGVGEDGPTH-QP-IE--------QLASLRAIPN----------LSVWR 486 (653)
T ss_pred H------HHHHHHh----cCCCEEEEEeCCccCCCCCCccc-CC-HH--------HHHHHhcCCC----------CEEEe
Confidence 3 3221111 13688988877 33 3349999 66 44 3456677885 99999
Q ss_pred cCCHHHHHHHHHHHHhcCCCCcEEEEccccccCCCCCCCCcccccccCCCCCCCCCCCceeEeecCCCCCCCCCCCccEE
Q 002323 798 VTTPANYFHVLRRQIHRGFRKPLIVISPKNLLRHKDCKSNLSEFDDVQGHPGFDKQGTRFKRLIKDQNGHSDLEEGIRRL 877 (936)
Q Consensus 798 pstpa~~fhlLrrq~~r~~~~Pli~~~pK~Llr~~~~~S~l~ef~~~~~~~~~~~pg~~F~~vi~d~~~~~~~~~~v~rv 877 (936)
|+++.++..+++.++. +.+.|++|..++.-+..... .+..++.. |. .+|-+.+ .. +-+
T Consensus 487 PaD~~E~~~~~~~a~~-~~~gP~~irl~r~~~~~~~~-~~~~~~~~-----------G~--~vl~~~~-----g~--dv~ 544 (653)
T TIGR00232 487 PCDGNETAAAWKYALE-SQDGPTALILSRQNLPQLEE-SSLEKVLK-----------GG--YVLKDSK-----GP--DII 544 (653)
T ss_pred eCCHHHHHHHHHHHHh-cCCCcEEEEEcCCccCCCCc-ccccccCC-----------Cc--EEEEecC-----CC--CEE
Confidence 9999999999999984 26789999988865432111 11122321 33 4442211 12 348
Q ss_pred EEeCchhHHHHHHhhc---ccCCce
Q 002323 878 VLCSGKVFITSLMKGG---RSAVQV 899 (936)
Q Consensus 878 ilcsGkvyydL~~~r~---~~~~~~ 899 (936)
|+++|-.....+++.+ ++++++
T Consensus 545 iia~G~~v~~al~Aa~~L~~~Gi~~ 569 (653)
T TIGR00232 545 LIATGSEVSLAVEAAKKLAAENIKV 569 (653)
T ss_pred EEEeChHHHHHHHHHHHHHhcCCcE
Confidence 9999998877766553 344544
No 30
>PTZ00182 3-methyl-2-oxobutanate dehydrogenase; Provisional
Probab=99.85 E-value=1.5e-20 Score=211.03 Aligned_cols=201 Identities=21% Similarity=0.330 Sum_probs=155.4
Q ss_pred hhhhhcCCcEEEecccCCC--cccccccceeeecCCCceeecCCCCcccCCCcceEEEccCcchhHHHHHHhhhccCCCC
Q 002323 629 ATLLVEGNHVRLSGQDVER--GTFSHRHSVLHDQETGEKYCPLDHVMMNQDEEMFTVSNSSLSEFGVLGFELGYSMENPN 706 (936)
Q Consensus 629 gsLl~eg~~Vrl~GqDv~r--GtF~~RHavl~dq~t~~~y~pL~~l~~~~~~g~~rV~nspLSE~avlG~e~G~sl~g~~ 706 (936)
-.++.++.+|.+.|+|++. |+|.. + +++. ++||+.|++|++|+|.+++|++.|+|+.|.+
T Consensus 46 ~~~~~~d~~iv~l~~D~~~~G~~~~~---------~-------~~f~--~~fgP~R~id~GIaEq~~vg~AaGlA~~G~~ 107 (355)
T PTZ00182 46 DEELARDPKVFVLGEDVAQYGGVYKC---------T-------KGLL--DKYGPDRVFDTPITEQGFAGFAIGAAMNGLR 107 (355)
T ss_pred HHHHhhCCCEEEEeCCccccCCchhh---------h-------HHHH--HHhCCCceeecCccHHHHHHHHHHHHhCCCE
Confidence 3567789999999999963 45655 4 8898 8899999999999999999999999999999
Q ss_pred cceeeeccchhhhhhHHHHHHHHHhhh-hhhhc----CccccEEEcCccC-CCCCccccCchhhhhhhcCCCCCCcccCC
Q 002323 707 SLVLWEAQFGDFANGAQVIFDQFLSSG-ESKWL----RQTGLVVLLPHGY-DGQGPEHSSARLERFLQMSDDNPFVIPEM 780 (936)
Q Consensus 707 ~LviwEaqFgDF~n~Aq~iidqfi~~~-~~kw~----~~s~lv~~lPhG~-~G~GpeHSs~RiERfLQl~~~~~~~~~~~ 780 (936)
| ++++||+||...| +||+++.. -.+|. ...++|++.|+|. .+.||.||++ +|. ++.++
T Consensus 108 P--vv~~~fa~Fl~ra---~dQi~~d~a~~~~~~~g~~~v~vv~~~~~g~~g~~G~tHs~~-~ea----------~lr~i 171 (355)
T PTZ00182 108 P--IAEFMFADFIFPA---FDQIVNEAAKYRYMSGGQFDCPIVIRGPNGAVGHGGAYHSQS-FEA----------YFAHV 171 (355)
T ss_pred E--EEEechhhHHHHH---HHHHHHHHHHhhcccCCCccCCEEEEeCCCCCCCCCCcccch-HHH----------HHhcC
Confidence 9 9999999999777 77766554 22332 4689999999887 4569999997 554 44577
Q ss_pred CchhhhhccccceEEEEcCCHHHHHHHHHHHHhcCCCCcEEEEccccccCCCCCCCCcccccccCCCCCCCCCCCceeEe
Q 002323 781 DPTLRKQIQECNWQIVNVTTPANYFHVLRRQIHRGFRKPLIVISPKNLLRHKDCKSNLSEFDDVQGHPGFDKQGTRFKRL 860 (936)
Q Consensus 781 pg~~~~~~~~~N~~Vv~pstpa~~fhlLrrq~~r~~~~Pli~~~pK~Llr~~~~~S~l~ef~~~~~~~~~~~pg~~F~~v 860 (936)
|| |+|+.|++|.|++++|+.++. .++|++|++||.|+|.+....+-+++. .|-|..+ |
T Consensus 172 Pn----------~~V~~Psd~~e~~~~l~~a~~--~~~P~~i~~p~~l~r~~~~~~~~~~~~---------~~~Gk~~-v 229 (355)
T PTZ00182 172 PG----------LKVVAPSDPEDAKGLLKAAIR--DPNPVVFFEPKLLYRESVEVVPEADYT---------LPLGKAK-V 229 (355)
T ss_pred CC----------CEEEeeCCHHHHHHHHHHHHh--CCCcEEEEeehHHhCCCCCCCCccccc---------ccCCcce-E
Confidence 75 999999999999999999997 689999999999998654321111111 0112222 2
Q ss_pred ecCCCCCCCCCCCccEEEEeCchhHHHHHHhhcc
Q 002323 861 IKDQNGHSDLEEGIRRLVLCSGKVFITSLMKGGR 894 (936)
Q Consensus 861 i~d~~~~~~~~~~v~rvilcsGkvyydL~~~r~~ 894 (936)
+.+ .-+-+|+|+|..+...+++.++
T Consensus 230 l~~---------G~di~Iia~Gs~~~~aleAa~~ 254 (355)
T PTZ00182 230 VRE---------GKDVTIVGYGSQVHVALKAAEE 254 (355)
T ss_pred ecC---------CCCEEEEEeCHHHHHHHHHHHH
Confidence 222 2346999999999999888754
No 31
>PRK11892 pyruvate dehydrogenase subunit beta; Provisional
Probab=99.84 E-value=2.2e-20 Score=215.66 Aligned_cols=199 Identities=18% Similarity=0.217 Sum_probs=158.1
Q ss_pred hhhhhcCCcEEEecccCCC--cccccccceeeecCCCceeecCCCCcccCCCcceEEEccCcchhHHHHHHhhhccCCCC
Q 002323 629 ATLLVEGNHVRLSGQDVER--GTFSHRHSVLHDQETGEKYCPLDHVMMNQDEEMFTVSNSSLSEFGVLGFELGYSMENPN 706 (936)
Q Consensus 629 gsLl~eg~~Vrl~GqDv~r--GtF~~RHavl~dq~t~~~y~pL~~l~~~~~~g~~rV~nspLSE~avlG~e~G~sl~g~~ 706 (936)
..++.++.+|.+.|+|+.. |.|+. | ++|. ++||+.|++|+||+|.+++|++.|+|+.|.+
T Consensus 153 ~~~~~~d~~vv~i~~Dv~~~~ga~~~---------t-------~~l~--~~fgp~R~id~gIaEq~~vg~AaGlA~~G~r 214 (464)
T PRK11892 153 AEEMRRDEDVFVMGEEVAEYQGAYKV---------T-------QGLL--QEFGARRVIDTPITEHGFAGIGVGAAFAGLK 214 (464)
T ss_pred HHHHhhCcCEEEEeCCccccCCcccc---------c-------hHHH--HHhCccceeecCccHHHHHHHHHHHHhCCCE
Confidence 3567899999999999976 67776 6 8888 8899999999999999999999999999999
Q ss_pred cceeeeccchhhhhhHHHHHHHHHhhhhhhhcC------ccccEEEcCccC-CCCCccccCchhhhhhhcCCCCCCcccC
Q 002323 707 SLVLWEAQFGDFANGAQVIFDQFLSSGESKWLR------QTGLVVLLPHGY-DGQGPEHSSARLERFLQMSDDNPFVIPE 779 (936)
Q Consensus 707 ~LviwEaqFgDF~n~Aq~iidqfi~~~~~kw~~------~s~lv~~lPhG~-~G~GpeHSs~RiERfLQl~~~~~~~~~~ 779 (936)
| |+|+|+.+|+.-| +||++++. .||.+ ..|+|++.|+|. .+.|++||+. |..++.+
T Consensus 215 P--iv~~~~~~f~~ra---~dQI~n~~-ak~~~~sgg~~~~pVv~~g~~G~~~~~G~hhs~~-----------d~a~~~~ 277 (464)
T PRK11892 215 P--IVEFMTFNFAMQA---IDQIINSA-AKTLYMSGGQMGCPIVFRGPNGAAARVAAQHSQD-----------YAAWYSH 277 (464)
T ss_pred E--EEEEehHHHHHHH---HHHHHHHH-hHHhhhcCCccCCCEEEEecCCCCCCCCCccccC-----------HHHHHhh
Confidence 9 8899999998777 67776554 33332 478999999886 6789988876 3478889
Q ss_pred CCchhhhhccccceEEEEcCCHHHHHHHHHHHHhcCCCCcEEEEccccccCCCCCCCCcccccccCCCCCCCCCCCceeE
Q 002323 780 MDPTLRKQIQECNWQIVNVTTPANYFHVLRRQIHRGFRKPLIVISPKNLLRHKDCKSNLSEFDDVQGHPGFDKQGTRFKR 859 (936)
Q Consensus 780 ~pg~~~~~~~~~N~~Vv~pstpa~~fhlLrrq~~r~~~~Pli~~~pK~Llr~~~~~S~l~ef~~~~~~~~~~~pg~~F~~ 859 (936)
+|| |+|+.|+||+|++++|+.+++ .++|++|+++|.+|.....+..++++. .|-|..+
T Consensus 278 iPg----------l~V~~P~d~~d~~~ll~~ai~--~~~Pv~ile~~~ry~~~~~vp~~~~~~---------~~~Gka~- 335 (464)
T PRK11892 278 IPG----------LKVVAPYSAADAKGLLKAAIR--DPNPVIFLENEILYGQSFDVPKLDDFV---------LPIGKAR- 335 (464)
T ss_pred CCC----------CEEEEeCCHHHHHHHHHHHhh--CCCcEEEEechhhcCCCCCCCCcCCcc---------ccCceEE-
Confidence 997 999999999999999999997 789999999999998654444444442 1224443
Q ss_pred eecCCCCCCCCCCCccEEEEeCchhHHHHHHhhc
Q 002323 860 LIKDQNGHSDLEEGIRRLVLCSGKVFITSLMKGG 893 (936)
Q Consensus 860 vi~d~~~~~~~~~~v~rvilcsGkvyydL~~~r~ 893 (936)
|+.+. + +-.|+++|-..+..+++.+
T Consensus 336 v~r~G-------~--DvtIva~G~~v~~Al~Aa~ 360 (464)
T PRK11892 336 IHREG-------K--DVTIVSFSIGMTYALKAAE 360 (464)
T ss_pred EEEcC-------C--CEEEEEccHHHHHHHHHHH
Confidence 33321 2 3489999998877766654
No 32
>PLN02234 1-deoxy-D-xylulose-5-phosphate synthase
Probab=99.83 E-value=3.8e-19 Score=211.45 Aligned_cols=201 Identities=15% Similarity=0.181 Sum_probs=141.0
Q ss_pred hhhhcCCcEEEecccCCCcccccccceeeecCCCceeecCCCCcccCCCcceEEEccCcchhHHHHHHhhhccCCCCcce
Q 002323 630 TLLVEGNHVRLSGQDVERGTFSHRHSVLHDQETGEKYCPLDHVMMNQDEEMFTVSNSSLSEFGVLGFELGYSMENPNSLV 709 (936)
Q Consensus 630 sLl~eg~~Vrl~GqDv~rGtF~~RHavl~dq~t~~~y~pL~~l~~~~~~g~~rV~nspLSE~avlG~e~G~sl~g~~~Lv 709 (936)
.++.++.+|.+.|+|+..||+ +..+. ++| +.|++|++|+|.+++|++.|+|+.|.+|
T Consensus 369 e~a~~D~~Iv~l~adm~ggt~------------------~~~f~--~~f-PdR~fdvGIAEq~~Vg~AaGLA~~G~rP-- 425 (641)
T PLN02234 369 AEAEADKDIVAIHAAMGGGTM------------------LNLFE--SRF-PTRCFDVGIAEQHAVTFAAGLACEGLKP-- 425 (641)
T ss_pred HHHHHCcCEEEEECCCCCCcc------------------hHHHH--HHc-cccccCCCcCHHHHHHHHHHHHHCCCeE--
Confidence 345678999999999965543 13444 455 8999999999999999999999999999
Q ss_pred eeeccchhhhhhHHHHHHHHHhhhhhhhcCccccEEEc-CccCCC-CCccccCchhhhhhhcCCCCCCcccCCCchhhhh
Q 002323 710 LWEAQFGDFANGAQVIFDQFLSSGESKWLRQTGLVVLL-PHGYDG-QGPEHSSARLERFLQMSDDNPFVIPEMDPTLRKQ 787 (936)
Q Consensus 710 iwEaqFgDF~n~Aq~iidqfi~~~~~kw~~~s~lv~~l-PhG~~G-~GpeHSs~RiERfLQl~~~~~~~~~~~pg~~~~~ 787 (936)
+.++ |++|..-| +||++.... ..+.|++++. ..|+.| .||.|++. +|-.++.++||
T Consensus 426 vv~~-fs~Fl~RA---~DQI~~dva---~~~lpV~~v~~~aG~~g~dG~TH~~~----------~Dia~lr~iPn----- 483 (641)
T PLN02234 426 FCTI-YSSFMQRA---YDQVVHDVD---LQKLPVRFAIDRAGLMGADGPTHCGA----------FDVTFMACLPN----- 483 (641)
T ss_pred EEEe-hHHHHHHH---HHHHHHHHh---hcCCCEEEEEeCCccCCCCCcccccc----------HHHHHHhcCCC-----
Confidence 8888 99998766 777765431 2356888776 457655 69999987 12233458896
Q ss_pred ccccceEEEEcCCHHHHHHHHHHHHhcCCCCcEEEEccccccCCCCCCCCcccccccCCCCCCCCCCCceeEeecCCCCC
Q 002323 788 IQECNWQIVNVTTPANYFHVLRRQIHRGFRKPLIVISPKNLLRHKDCKSNLSEFDDVQGHPGFDKQGTRFKRLIKDQNGH 867 (936)
Q Consensus 788 ~~~~N~~Vv~pstpa~~fhlLrrq~~r~~~~Pli~~~pK~Llr~~~~~S~l~ef~~~~~~~~~~~pg~~F~~vi~d~~~~ 867 (936)
|+|+.|++|++++++|+.++.+ .++|++|..||..+.... .+.+. ++...|-|.. .|+.+.
T Consensus 484 -----l~V~~Psd~~E~~~~l~~a~~~-~~~Pv~ir~~R~~~~~~~--~~~~~-------~~~~~~iGk~-~vlreG--- 544 (641)
T PLN02234 484 -----MIVMAPSDEAELFNMVATAAAI-DDRPSCFRYHRGNGIGVS--LPPGN-------KGVPLQIGRG-RILRDG--- 544 (641)
T ss_pred -----CEEEeeCCHHHHHHHHHHHHhC-CCCCEEEEeecccccccc--cCCCC-------ccccccCceE-EEEEeC---
Confidence 9999999999999999998863 468999999998762111 11000 0000112333 334332
Q ss_pred CCCCCCccEEEEeCchhHHHHHHhhc---ccCCcee
Q 002323 868 SDLEEGIRRLVLCSGKVFITSLMKGG---RSAVQVM 900 (936)
Q Consensus 868 ~~~~~~v~rvilcsGkvyydL~~~r~---~~~~~~~ 900 (936)
+ +-.|+++|-..+..+++.+ ++++++-
T Consensus 545 ----~--dvtIva~G~~v~~Al~AA~~L~~~GI~v~ 574 (641)
T PLN02234 545 ----E--RVALLGYGSAVQRCLEAASMLSERGLKIT 574 (641)
T ss_pred ----C--CEEEEEecHHHHHHHHHHHHHHhcCCCEE
Confidence 2 3489999999888887664 3455543
No 33
>CHL00144 odpB pyruvate dehydrogenase E1 component beta subunit; Validated
Probab=99.80 E-value=5e-19 Score=196.90 Aligned_cols=205 Identities=20% Similarity=0.202 Sum_probs=154.3
Q ss_pred hhhhhcCCcEEEecccCCC--cccccccceeeecCCCceeecCCCCcccCCCcceEEEccCcchhHHHHHHhhhccCCCC
Q 002323 629 ATLLVEGNHVRLSGQDVER--GTFSHRHSVLHDQETGEKYCPLDHVMMNQDEEMFTVSNSSLSEFGVLGFELGYSMENPN 706 (936)
Q Consensus 629 gsLl~eg~~Vrl~GqDv~r--GtF~~RHavl~dq~t~~~y~pL~~l~~~~~~g~~rV~nspLSE~avlG~e~G~sl~g~~ 706 (936)
..++.++.+|.+.|+|++. |.|+. + +++. ++|+..|++|++|+|..++|++.|+|+.|.+
T Consensus 15 ~~~~~~dp~iv~l~~d~~~~~g~~~~---------~-------~~f~--~~fp~~R~~n~gIaEq~~vg~AaGlA~~G~~ 76 (327)
T CHL00144 15 DEEMARDPRVFVIGEDVGHYGGSYKV---------T-------KGLH--EKYGDLRVLDTPIAENSFTGMAIGAAMTGLR 76 (327)
T ss_pred HHHHhhCCCEEEEeCcccccCCchhH---------H-------HHHH--HHCCCccEeeccccHHHHHHHHHHHHHCCCE
Confidence 3567789999999999975 44665 4 7888 7887779999999999999999999999999
Q ss_pred cceeeeccchhhhhhHHHHHHHHHhhh---hhhhc--CccccEEEcCccC-CCCCccccCchhhhhhhcCCCCCCcccCC
Q 002323 707 SLVLWEAQFGDFANGAQVIFDQFLSSG---ESKWL--RQTGLVVLLPHGY-DGQGPEHSSARLERFLQMSDDNPFVIPEM 780 (936)
Q Consensus 707 ~LviwEaqFgDF~n~Aq~iidqfi~~~---~~kw~--~~s~lv~~lPhG~-~G~GpeHSs~RiERfLQl~~~~~~~~~~~ 780 (936)
| |++.++.+|..-| +||+++.. .++++ ...|+|++.|.|. .+.|+.||++ +| .+|.++
T Consensus 77 p--vv~~~~~~f~~ra---~dQi~~~~a~~~~~~gg~~~~~vv~~~~g~~~~~~G~tHs~~-~e----------a~~~~i 140 (327)
T CHL00144 77 P--IVEGMNMGFLLLA---FNQISNNAGMLHYTSGGNFTIPIVIRGPGGVGRQLGAEHSQR-LE----------SYFQSV 140 (327)
T ss_pred E--EEEeehhhHHHHH---HHHHHHHHHHHhhccCCCccCCEEEEecCCCCCCCCcccccc-HH----------HHHhcC
Confidence 9 9999999999877 56655432 22222 2568999988554 5689999998 45 456789
Q ss_pred CchhhhhccccceEEEEcCCHHHHHHHHHHHHhcCCCCcEEEEccccccCCCCCCCCcccccccCCCCCCCCCCCceeEe
Q 002323 781 DPTLRKQIQECNWQIVNVTTPANYFHVLRRQIHRGFRKPLIVISPKNLLRHKDCKSNLSEFDDVQGHPGFDKQGTRFKRL 860 (936)
Q Consensus 781 pg~~~~~~~~~N~~Vv~pstpa~~fhlLrrq~~r~~~~Pli~~~pK~Llr~~~~~S~l~ef~~~~~~~~~~~pg~~F~~v 860 (936)
|| |+|++||+|.|++++|+++++ .++|++|++||.|++.+..+. -+++. .|-|.. .|
T Consensus 141 Pg----------l~V~~Psd~~d~~~~l~~a~~--~~~Pv~ire~~~l~~~~~~v~-~~~~~---------~~~Gk~-~v 197 (327)
T CHL00144 141 PG----------LQIVACSTPYNAKGLLKSAIR--SNNPVIFFEHVLLYNLKEEIP-DNEYL---------LPLEKA-EV 197 (327)
T ss_pred CC----------CEEEEeCCHHHHHHHHHHHHh--CCCcEEEEEcHHhcCCCCCCC-CCCcc---------ccCCee-EE
Confidence 96 999999999999999999997 789999999999998653321 11111 122332 33
Q ss_pred ecCCCCCCCCCCCccEEEEeCchhHHHHHHhhc---ccCCce
Q 002323 861 IKDQNGHSDLEEGIRRLVLCSGKVFITSLMKGG---RSAVQV 899 (936)
Q Consensus 861 i~d~~~~~~~~~~v~rvilcsGkvyydL~~~r~---~~~~~~ 899 (936)
+.+. + +-.|+++|-..+..+++.+ ++++++
T Consensus 198 ~~~G-------~--ditiia~G~~v~~al~Aa~~L~~~Gi~~ 230 (327)
T CHL00144 198 VRPG-------N--DITILTYSRMRHHVLQAVKVLVEKGYDP 230 (327)
T ss_pred EEcC-------C--CEEEEEccHHHHHHHHHHHHHHhcCCCE
Confidence 3332 2 2489999998888877664 344444
No 34
>PRK09212 pyruvate dehydrogenase subunit beta; Validated
Probab=99.79 E-value=8.1e-19 Score=195.26 Aligned_cols=206 Identities=16% Similarity=0.221 Sum_probs=157.0
Q ss_pred hhhhhhcCCcEEEecccCCC--cccccccceeeecCCCceeecCCCCcccCCCcceEEEccCcchhHHHHHHhhhccCCC
Q 002323 628 FATLLVEGNHVRLSGQDVER--GTFSHRHSVLHDQETGEKYCPLDHVMMNQDEEMFTVSNSSLSEFGVLGFELGYSMENP 705 (936)
Q Consensus 628 fgsLl~eg~~Vrl~GqDv~r--GtF~~RHavl~dq~t~~~y~pL~~l~~~~~~g~~rV~nspLSE~avlG~e~G~sl~g~ 705 (936)
.-.++.++.+|.+.|+|++. |.|.. | +++. ++||+.|++|++|+|.+++|++.|+|+.|.
T Consensus 14 L~~~~~~d~~iv~l~~d~~~~~g~~~~---------~-------~~~~--~~fgp~R~~d~gIaE~~~vg~AaGlA~~G~ 75 (327)
T PRK09212 14 MQEEMERDPKVFLMGEEVGEYQGAYKV---------T-------QGLL--EQFGPKRVIDTPITEHGFAGLAVGAAFAGL 75 (327)
T ss_pred HHHHHHhCCCEEEEcCcccccCCcchh---------h-------HHHH--HHhCCCceeecchhHHHHHHHHHHHHHcCC
Confidence 34678899999999999976 67777 6 8888 889999999999999999999999999999
Q ss_pred CcceeeeccchhhhhhHHHHHHHHHhhh-hhhhc----CccccEEEcCccC-CCCCccccCchhhhhhhcCCCCCCcccC
Q 002323 706 NSLVLWEAQFGDFANGAQVIFDQFLSSG-ESKWL----RQTGLVVLLPHGY-DGQGPEHSSARLERFLQMSDDNPFVIPE 779 (936)
Q Consensus 706 ~~LviwEaqFgDF~n~Aq~iidqfi~~~-~~kw~----~~s~lv~~lPhG~-~G~GpeHSs~RiERfLQl~~~~~~~~~~ 779 (936)
+| |+++|+.+|..-| +||++... ..+|. ...++|++.|.|. .+.|++||++ +| +++.+
T Consensus 76 ~P--iv~~~~~~f~~ra---~dQi~~d~a~~~~~~~~~~~v~vv~~~~~g~~~~~G~tH~~~-~e----------a~~r~ 139 (327)
T PRK09212 76 RP--IVEFMTFNFSMQA---IDQIVNSAAKTNYMSGGQLKCPIVFRGPNGAAARVAAQHSQC-YA----------AWYSH 139 (327)
T ss_pred ee--EEEeehhhHHHHH---HHHHHHHHHHHhhccCCCcCccEEEEeCCCCCCCCCcccccC-HH----------HHHhc
Confidence 99 8899999999888 55554432 22232 3578999999875 6779999999 44 46678
Q ss_pred CCchhhhhccccceEEEEcCCHHHHHHHHHHHHhcCCCCcEEEEccccccCCCCCCCCcccccccCCCCCCCCCCCceeE
Q 002323 780 MDPTLRKQIQECNWQIVNVTTPANYFHVLRRQIHRGFRKPLIVISPKNLLRHKDCKSNLSEFDDVQGHPGFDKQGTRFKR 859 (936)
Q Consensus 780 ~pg~~~~~~~~~N~~Vv~pstpa~~fhlLrrq~~r~~~~Pli~~~pK~Llr~~~~~S~l~ef~~~~~~~~~~~pg~~F~~ 859 (936)
+|| |+|+.|++|.++.++|+.++. .++|++|++||.+|..+..+. ++.. ..|-|..+
T Consensus 140 iP~----------l~V~~P~d~~e~~~~l~~a~~--~~~Pv~i~~~~~~~~~~~~~~--~~~~--------~~~~Gk~~- 196 (327)
T PRK09212 140 IPG----------LKVVAPYFAADCKGLLKTAIR--DPNPVIFLENEILYGHSHEVP--EEEE--------SIPIGKAA- 196 (327)
T ss_pred CCC----------CEEEeeCCHHHHHHHHHHHHh--CCCcEEEEEchhhcCCCCCCC--CCCc--------cccCCeeE-
Confidence 996 999999999999999999997 689999999999887322211 1110 01223332
Q ss_pred eecCCCCCCCCCCCccEEEEeCchhHHHHHHhhcc---cCCce
Q 002323 860 LIKDQNGHSDLEEGIRRLVLCSGKVFITSLMKGGR---SAVQV 899 (936)
Q Consensus 860 vi~d~~~~~~~~~~v~rvilcsGkvyydL~~~r~~---~~~~~ 899 (936)
|+.+. + +-+|+|.|-.++..+++.++ ++.++
T Consensus 197 vl~~G-------~--di~iva~G~~~~~a~eAa~~L~~~Gi~v 230 (327)
T PRK09212 197 ILREG-------S--DVTIVTFSIQVKLALEAAELLEKEGISV 230 (327)
T ss_pred EEEeC-------C--CEEEEEccHHHHHHHHHHHHHHhcCCcE
Confidence 33321 1 35999999999998777643 44444
No 35
>PLN02683 pyruvate dehydrogenase E1 component subunit beta
Probab=99.78 E-value=2.7e-18 Score=192.95 Aligned_cols=210 Identities=16% Similarity=0.232 Sum_probs=157.5
Q ss_pred hhhhhhcCCcEEEecccCCC--cccccccceeeecCCCceeecCCCCcccCCCcceEEEccCcchhHHHHHHhhhccCCC
Q 002323 628 FATLLVEGNHVRLSGQDVER--GTFSHRHSVLHDQETGEKYCPLDHVMMNQDEEMFTVSNSSLSEFGVLGFELGYSMENP 705 (936)
Q Consensus 628 fgsLl~eg~~Vrl~GqDv~r--GtF~~RHavl~dq~t~~~y~pL~~l~~~~~~g~~rV~nspLSE~avlG~e~G~sl~g~ 705 (936)
.-.++.++.+|.+.|+|++. |+|.. | +++. +++++.|++|++|+|.+++|++.|+|+.|.
T Consensus 37 L~e~~~~d~~iv~i~~D~~~~~g~~~~---------~-------~~l~--~~~~P~R~~d~GIAEq~~vg~AaGlA~~G~ 98 (356)
T PLN02683 37 LDEEMSADPKVFIMGEEVGEYQGAYKI---------T-------KGLL--QKYGPDRVLDTPITEAGFTGIGVGAAYAGL 98 (356)
T ss_pred HHHHHhhCcCEEEEccccccccCccch---------h-------hhHH--HHhCCCcEEECchhHHHHHHHHHHHHHCCC
Confidence 34667899999999999975 66766 5 8888 888999999999999999999999999999
Q ss_pred CcceeeeccchhhhhhHHHHHHHHHhhh-hhhhc--C--ccccEEEcCccC-CCCCccccCchhhhhhhcCCCCCCcccC
Q 002323 706 NSLVLWEAQFGDFANGAQVIFDQFLSSG-ESKWL--R--QTGLVVLLPHGY-DGQGPEHSSARLERFLQMSDDNPFVIPE 779 (936)
Q Consensus 706 ~~LviwEaqFgDF~n~Aq~iidqfi~~~-~~kw~--~--~s~lv~~lPhG~-~G~GpeHSs~RiERfLQl~~~~~~~~~~ 779 (936)
+| ++++||.+|..-| +||++... -.+|. . ..|++++.|+|. .|.|+.||+. .+ .+|.+
T Consensus 99 ~P--~v~~~~~~f~~ra---~dQi~~dva~~~~~~~g~~~~pV~i~~~~G~~~g~G~tH~~~-~~----------a~lr~ 162 (356)
T PLN02683 99 KP--VVEFMTFNFSMQA---IDHIINSAAKTNYMSAGQISVPIVFRGPNGAAAGVGAQHSQC-FA----------AWYSS 162 (356)
T ss_pred EE--EEEEehhhHHHHH---HHHHHHHHHHhccccCCCccCCEEEEEeCCCCCCCCCccccC-HH----------HHHhc
Confidence 99 8999999999877 66666543 22332 2 379999999986 6779999877 12 56778
Q ss_pred CCchhhhhccccceEEEEcCCHHHHHHHHHHHHhcCCCCcEEEEccccccCCCCCCCCcccccccCCCCCCCCCCCceeE
Q 002323 780 MDPTLRKQIQECNWQIVNVTTPANYFHVLRRQIHRGFRKPLIVISPKNLLRHKDCKSNLSEFDDVQGHPGFDKQGTRFKR 859 (936)
Q Consensus 780 ~pg~~~~~~~~~N~~Vv~pstpa~~fhlLrrq~~r~~~~Pli~~~pK~Llr~~~~~S~l~ef~~~~~~~~~~~pg~~F~~ 859 (936)
+|| |+|+.|++|.++.++|+.++. .++|++|.+||.+++.+..+. ++-.. +....|=|.. .
T Consensus 163 iPn----------l~V~~Pad~~e~~~~l~~a~~--~~gPv~ir~~~~~~~~~~~~~--~~~~~----~~~~~~~Gk~-~ 223 (356)
T PLN02683 163 VPG----------LKVLAPYSSEDARGLLKAAIR--DPDPVVFLENELLYGESFPVS--AEVLD----SSFVLPIGKA-K 223 (356)
T ss_pred CCC----------CEEEEeCCHHHHHHHHHHHHh--CCCcEEEEEehhhccCCCCCC--CCCCC----ccccccCCee-E
Confidence 996 999999999999999999997 779999999999998543321 11000 0011121333 3
Q ss_pred eecCCCCCCCCCCCccEEEEeCchhHHHHHHhhc---ccCCce
Q 002323 860 LIKDQNGHSDLEEGIRRLVLCSGKVFITSLMKGG---RSAVQV 899 (936)
Q Consensus 860 vi~d~~~~~~~~~~v~rvilcsGkvyydL~~~r~---~~~~~~ 899 (936)
++.+ .+ +-+|+++|-.....+++.+ ++++++
T Consensus 224 v~r~-------G~--dvtIia~G~~v~~Al~Aa~~L~~~GI~v 257 (356)
T PLN02683 224 IERE-------GK--DVTIVAFSKMVGYALKAAEILAKEGISA 257 (356)
T ss_pred EEEc-------CC--CEEEEEccHHHHHHHHHHHHHHhcCCCE
Confidence 3332 12 2499999999888876653 445544
No 36
>PLN02225 1-deoxy-D-xylulose-5-phosphate synthase
Probab=99.78 E-value=1.1e-17 Score=199.70 Aligned_cols=389 Identities=13% Similarity=0.116 Sum_probs=236.2
Q ss_pred ccCCCccccceeechhHHHHHhcCCCCCCceEEEEEecCcccCCCchHHHhhhcc---CCCCCccccEEEEEEeCCcccc
Q 002323 362 NPSHLEAVDPVVVGKTRAKQYYSHDVDRTKNMGVLIHGDGSFAGQGVVYETLHLS---ALPNYTTGGTIHIVVNNQVAFT 438 (936)
Q Consensus 362 NPSHLeav~PVa~G~ArA~q~~~~d~~~~~~v~v~~hGDgA~sGQGvv~EtLNlA---~LP~Y~~GGtIhIV~NNQigfT 438 (936)
...|-.+....|+|.|.|+.+++.+ .=+|+++||||++ -|..+|+||-+ +-+ +|.|+.+|+.+|+
T Consensus 187 ~~GHssTSiSaalG~a~ardl~g~~-----~~vvaVIGDGalt-gGma~EaLN~~g~~~~~------livILNDN~mSi~ 254 (701)
T PLN02225 187 GTGHGCNSISAGLGLAVARDIKGKR-----DRVVAVIDNATIT-AGQAYEAMSNAGYLDSN------MIVILNDSRHSLH 254 (701)
T ss_pred CCChHHHHHHHHHHHHHHHHhcCCC-----CcEEEEEcCcchh-hhhHHHHHhhhhccCCC------EEEEEeCCCCCCC
Confidence 3467888889999999999988765 5578999999999 99999999998 445 9999999999998
Q ss_pred cCCCCCCCcchhhHHHHHHHHHHHHHHHccCCCEEEEEEeeecCCCCCCCCCCCCCHHHHHHHHcCCCHHHHHHHHHHHc
Q 002323 439 TDPRAGRSSQYCTDAVVHVCELAAEWRQKFHSDVVVDLVCYRRFGHNEIDEPSFTQPKMYQVIRSHPSAFEIYQKKLLES 518 (936)
Q Consensus 439 T~~~~~rss~y~tDAV~~a~~~A~e~rr~f~~pvlIdlv~YRr~GHne~Ddp~ytqp~~y~~i~~~~dpl~~y~~~Li~e 518 (936)
-+.+.. +. +-+-+....+...|..+ -|..+++ -.+.+++.
T Consensus 255 ~n~~~~-~~-----~~vG~ls~~l~~l~~~~---------------------------~y~~~~~-------~~~~~~~~ 294 (701)
T PLN02225 255 PNMEEG-SK-----ASISALSSIMSKIQSSK---------------------------IFRKFRE-------LAKAMTKR 294 (701)
T ss_pred CCCCCc-cC-----CccchHHHHHHHHhccc---------------------------hHHHHHH-------HHHHHHHh
Confidence 763211 11 12222333333333211 2333331 11111111
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHhhhcCCCccchhhhhccCCCCcccccccCCCCCChHHHHHHHHHhccCC--CCCC
Q 002323 519 AQVTQEDINRIQEKVNTILNEEFMASKDYVPKRRDWLSAYWAGFKSPEQVSRIRNTGVKPEILKNVGKAITNLP--ENFK 596 (936)
Q Consensus 519 Gilt~eei~~i~~~~~~~l~~a~~~A~~~~p~~~~~~~~~w~~~~~~~~~~~~~~Tgv~~~~l~~i~~~~~~~P--~~f~ 596 (936)
+. .-+ .+.-+++++..+.... |....+|+.-=-.+..| -.|-+.+.|..+-+.+..++ .-.-
T Consensus 295 --~~-~~~----~~~~~~~~~~~k~~~~--~~~~~lFe~lG~~Y~Gp-------vDGHdi~~Li~~l~~~k~~~~~~Pvl 358 (701)
T PLN02225 295 --IG-KGM----YEWAAKVDEYARGMVG--PTGSTLFEELGLYYIGP-------VDGHNIEDLVCVLREVSSLDSMGPVL 358 (701)
T ss_pred --CC-HHH----HHHHHHHHHHhhhccC--CCccCcHHHcCCeEECc-------cCCCCHHHHHHHHHHHHcCCCCCCEE
Confidence 11 001 1111222222222111 21112333210011222 24566777777766665554 1122
Q ss_pred chhHHHHHHHHHHHHHhcC------CcccHHHHHHHHhhhhhhcCCcEEEecccCCCcccccccceeeecCCCceeecCC
Q 002323 597 PHRGVKKVYEQRAQMIETG------EGIDWAVGEALAFATLLVEGNHVRLSGQDVERGTFSHRHSVLHDQETGEKYCPLD 670 (936)
Q Consensus 597 ~h~~l~r~l~~R~~~~~~~------~~iDWa~aE~LAfgsLl~eg~~Vrl~GqDv~rGtF~~RHavl~dq~t~~~y~pL~ 670 (936)
+|=.-+|= +-.+.| ....|..+=.-+.-.++.++.+|.+.+.|...||. |.
T Consensus 359 vHv~T~KG-----kd~~tg~~~~~~~~~s~~~~f~~aL~~la~~D~~Iv~Itadm~~gtg------------------l~ 415 (701)
T PLN02225 359 VHVITEEN-----RDAETGKNIMVKDRRTYSDCFVEALVMEAEKDRDIVVVHAGMEMDAS------------------LI 415 (701)
T ss_pred EEEEecCC-----CCCCCCCcCCCCCCcCHHHHHHHHHHHHHhhCCCEEEEeCCccCccc------------------HH
Confidence 22221111 011122 12345433333334678899999999999865543 25
Q ss_pred CCcccCCCcceEEEccCcchhHHHHHHhhhccCCCCcceeeeccchhhhhhHHHHHHHHHhhhhhhhcCccccEEEcCcc
Q 002323 671 HVMMNQDEEMFTVSNSSLSEFGVLGFELGYSMENPNSLVLWEAQFGDFANGAQVIFDQFLSSGESKWLRQTGLVVLLPHG 750 (936)
Q Consensus 671 ~l~~~~~~g~~rV~nspLSE~avlG~e~G~sl~g~~~LviwEaqFgDF~n~Aq~iidqfi~~~~~kw~~~s~lv~~lPhG 750 (936)
.+. ++| +.|++|++|+|..++||+.|+|+.|.+| +++++ .+|..-| +||++... ++......+++.- .|
T Consensus 416 ~f~--~~f-PdRffDvGIAEQhaVt~AAGLA~~G~kP--vv~iy-stFlqRA---yDQI~~Dv-al~~lpV~~vid~-aG 484 (701)
T PLN02225 416 TFQ--ERF-PDRFFNVGMAEQHAVTFSAGLSSGGLKP--FCIIP-SAFLQRA---YDQVVHDV-DRQRKAVRFVITS-AG 484 (701)
T ss_pred HHH--HHc-cccccccCccHHHHHHHHHHHHHCCCEE--EEEee-hhHHHHH---HHHHHHHH-HhhcCCceEEEEC-Cc
Confidence 666 666 8999999999999999999999999999 88765 7998666 78877643 3444445555554 36
Q ss_pred CCC-CCccccCchhhhhhhcCCCCCCcccCCCchhhhhccccceEEEEcCCHHHHHHHHHHHHhcCCCCcEEEEcccccc
Q 002323 751 YDG-QGPEHSSARLERFLQMSDDNPFVIPEMDPTLRKQIQECNWQIVNVTTPANYFHVLRRQIHRGFRKPLIVISPKNLL 829 (936)
Q Consensus 751 ~~G-~GpeHSs~RiERfLQl~~~~~~~~~~~pg~~~~~~~~~N~~Vv~pstpa~~fhlLrrq~~r~~~~Pli~~~pK~Ll 829 (936)
+.| .||.|++. +|..++.++|| |+|+.|++|.++.++|+.++. ..+.|++|..||..+
T Consensus 485 lvg~DG~TH~g~----------~Dia~lr~IPn----------m~V~aPsD~~El~~mL~~A~~-~~~gPv~IR~pRg~~ 543 (701)
T PLN02225 485 LVGSDGPVQCGA----------FDIAFMSSLPN----------MIAMAPADEDELVNMVATAAY-VTDRPVCFRFPRGSI 543 (701)
T ss_pred cCCCCCcccccc----------HHHHHHhcCCC----------CEEEeeCCHHHHHHHHHHHHh-cCCCCEEEEeccccc
Confidence 655 49999977 34467789995 999999999999999999885 256899999999865
Q ss_pred CC-CCCCCCcccccccCCCCCCCCCCCceeEeecCCCCCCCCCCCccEEEEeCchhHHHHHHhhcc
Q 002323 830 RH-KDCKSNLSEFDDVQGHPGFDKQGTRFKRLIKDQNGHSDLEEGIRRLVLCSGKVFITSLMKGGR 894 (936)
Q Consensus 830 r~-~~~~S~l~ef~~~~~~~~~~~pg~~F~~vi~d~~~~~~~~~~v~rvilcsGkvyydL~~~r~~ 894 (936)
.. +.....-..|. -|.- .|+.+. + +-.|+++|...+..+++.++
T Consensus 544 ~~~~~~~~~~~~~~-----------iGK~-~vlreG-------~--dvtIia~G~mv~~Al~AA~~ 588 (701)
T PLN02225 544 VNMNYLVPTGLPIE-----------IGRG-RVLVEG-------Q--DVALLGYGAMVQNCLHAHSL 588 (701)
T ss_pred CCCCcCCCCCcccc-----------Ccce-EEEEeC-------C--CEEEEeccHHHHHHHHHHHH
Confidence 32 11111101111 1222 344332 2 24899999999998887643
No 37
>PLN02790 transketolase
Probab=99.75 E-value=3.2e-16 Score=188.68 Aligned_cols=416 Identities=14% Similarity=0.167 Sum_probs=229.4
Q ss_pred eccccCCCccccceeechhHHHHHhcC-----CCCCCceEEEEEecCcccCCCchHHHhhhcc---CCCCCccccEEEEE
Q 002323 359 LVANPSHLEAVDPVVVGKTRAKQYYSH-----DVDRTKNMGVLIHGDGSFAGQGVVYETLHLS---ALPNYTTGGTIHIV 430 (936)
Q Consensus 359 l~~NPSHLeav~PVa~G~ArA~q~~~~-----d~~~~~~v~v~~hGDgA~sGQGvv~EtLNlA---~LP~Y~~GGtIhIV 430 (936)
+....+|||.+.|+|+|+|+|.++... +....+..++|++|||+++ +|++||+||+| +|| -+|+||
T Consensus 100 i~~~tG~lG~gl~~A~G~A~A~k~~~~~~~~~~~~~~~~~v~~~~GDG~l~-eG~~~EAl~~A~~~~L~-----nli~i~ 173 (654)
T PLN02790 100 IEVTTGPLGQGIANAVGLALAEKHLAARFNKPDHKIVDHYTYCILGDGCQM-EGISNEAASLAGHWGLG-----KLIVLY 173 (654)
T ss_pred ccccCCchhchHHHHHHHHHHHHHHHHHhCCCcccccCCEEEEEECcCccc-chHHHHHHHHHHHhCCC-----CEEEEE
Confidence 345578899999999999999996421 1111247899999999999 99999999999 886 268899
Q ss_pred EeCCcccccCCCCCCCcchh-------------hH--HHHHHHHHHHHHHHc-cCCCEEEEEEeeecCCCCCC-CCCC--
Q 002323 431 VNNQVAFTTDPRAGRSSQYC-------------TD--AVVHVCELAAEWRQK-FHSDVVVDLVCYRRFGHNEI-DEPS-- 491 (936)
Q Consensus 431 ~NNQigfTT~~~~~rss~y~-------------tD--AV~~a~~~A~e~rr~-f~~pvlIdlv~YRr~GHne~-Ddp~-- 491 (936)
.||+++++++.......... .| --+.+...|++.+++ .++|++|++.|++-.|-... +...
T Consensus 174 d~N~~~i~~~~~~~~~~~~~~~f~a~G~~~~~vdgg~hd~~~l~~a~~~a~~~~~~P~lI~~~T~kG~G~~~~e~~~~~H 253 (654)
T PLN02790 174 DDNHISIDGDTEIAFTEDVDKRYEALGWHTIWVKNGNTDYDEIRAAIKEAKAVTDKPTLIKVTTTIGYGSPNKANSYSVH 253 (654)
T ss_pred ecCCccccCCcccccchhHHHHHHHcCCeEEEECCCCCCHHHHHHHHHHHHhcCCCeEEEEEEEeecCCCccccCCCCcC
Confidence 99999999988754322110 01 145555666666665 68999999999999998633 2222
Q ss_pred CC--CHHHHHHHHc----CCCHHHH-------HHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhhhcCCCccchhhhh
Q 002323 492 FT--QPKMYQVIRS----HPSAFEI-------YQKKLLESAQVTQEDINRIQEKVNTILNEEFMASKDYVPKRRDWLSAY 558 (936)
Q Consensus 492 yt--qp~~y~~i~~----~~dpl~~-------y~~~Li~eGilt~eei~~i~~~~~~~l~~a~~~A~~~~p~~~~~~~~~ 558 (936)
.. .+++++..++ +.+|... |.+ ..+.| ....+++.+.+.+. ....|.....+...
T Consensus 254 ~~~~~~~~~~~~~~~l~~~~~~F~~~~~~~~~~~~-~~~~~-------~~~~~~w~~~~~~~----~~~~~~~~~~~~~~ 321 (654)
T PLN02790 254 GAALGEKEVDATRKNLGWPYEPFHVPEDVKSHWSK-HTKEG-------AALEAEWNAKFAEY----KKKYPEEAAELKSL 321 (654)
T ss_pred CCCCCHHHHHHHHHHhCCCCCCCcCCHHHHHHHHH-HHhhh-------hhhHHHHHHHHHHH----HhhCHHHHHHHHHH
Confidence 11 2344443321 0111110 110 00001 00111111111111 11011100001101
Q ss_pred ccCCCCcccccccCCCCCChHHHHHHHHHhccCCCCCCchhHHHHHHHHHHHHHhcCCcccHHHHHHHHhhhhhhcCCcE
Q 002323 559 WAGFKSPEQVSRIRNTGVKPEILKNVGKAITNLPENFKPHRGVKKVYEQRAQMIETGEGIDWAVGEALAFATLLVEGNHV 638 (936)
Q Consensus 559 w~~~~~~~~~~~~~~Tgv~~~~l~~i~~~~~~~P~~f~~h~~l~r~l~~R~~~~~~~~~iDWa~aE~LAfgsLl~eg~~V 638 (936)
++. ..|.. +. ..+.++++. .+ ....|.. +.+.|. .|.....+|
T Consensus 322 ~~~-~~~~~--------~~--------~~~~~~~~~---~~----~~a~R~~-----------~~~~l~--~i~~~~p~i 364 (654)
T PLN02790 322 ISG-ELPSG--------WE--------KALPTFTPE---DP----ADATRNL-----------SQKCLN--ALAKVLPGL 364 (654)
T ss_pred hcc-CCchh--------hh--------hhhhhhccc---Cc----chHHHHH-----------HHHHHH--HHHhhCCCe
Confidence 100 00000 00 000000000 00 0111111 111111 122233455
Q ss_pred EEecccCCCcccccccceeeecCCCceeecCCCCcccCCCcceEEEccCcchhHHHHHHhhhccC--CCCcceeeeccch
Q 002323 639 RLSGQDVERGTFSHRHSVLHDQETGEKYCPLDHVMMNQDEEMFTVSNSSLSEFGVLGFELGYSME--NPNSLVLWEAQFG 716 (936)
Q Consensus 639 rl~GqDv~rGtF~~RHavl~dq~t~~~y~pL~~l~~~~~~g~~rV~nspLSE~avlG~e~G~sl~--g~~~LviwEaqFg 716 (936)
...--|+...+- | ...-+..+. +++.+.|.+|.-|+|.+.++++.|+|+. |.+|.+-.=++|.
T Consensus 365 v~gsaDl~~s~~-----------t--~~~~~~~f~--~~~~p~Rfi~~GIaEq~mv~~AaGlA~~G~G~~P~~~tf~~F~ 429 (654)
T PLN02790 365 IGGSADLASSNM-----------T--LLKDFGDFQ--KDTPEERNVRFGVREHGMGAICNGIALHSSGLIPYCATFFVFT 429 (654)
T ss_pred EEEECCCCcccc-----------c--ccccchhhh--hcCCCCCeEEeeechHHHHHHHHHHHhcCCCcEEEEEecHHHH
Confidence 544456533111 0 011123444 4433679999999999999999999995 6999887777788
Q ss_pred hhhhhHHHHHHHHHhhhhhhhcCccccEEEcCc-cC-CC-CCccccCchhhhhhhcCCCCCCcccCCCchhhhhccccce
Q 002323 717 DFANGAQVIFDQFLSSGESKWLRQTGLVVLLPH-GY-DG-QGPEHSSARLERFLQMSDDNPFVIPEMDPTLRKQIQECNW 793 (936)
Q Consensus 717 DF~n~Aq~iidqfi~~~~~kw~~~s~lv~~lPh-G~-~G-~GpeHSs~RiERfLQl~~~~~~~~~~~pg~~~~~~~~~N~ 793 (936)
||+..+ |- .+ + ....|+++..-| |. .| -||.|.. || |..++-.+| ||
T Consensus 430 ~~~~~~---ir--~~-a----l~~lpV~~v~thdg~~~G~DG~THq~--ie--------dla~lR~iP----------nl 479 (654)
T PLN02790 430 DYMRAA---MR--LS-A----LSEAGVIYVMTHDSIGLGEDGPTHQP--IE--------HLASLRAMP----------NI 479 (654)
T ss_pred HHHHHH---HH--HH-H----hcCCCeEEEEECCceeecCCCCCccc--HH--------HHHHhcCCC----------Cc
Confidence 776543 21 11 1 124788888866 33 34 4899975 33 334566788 59
Q ss_pred EEEEcCCHHHHHHHHHHHHhcCCCCcEEEEccccccCCCCCCCCcccccccCCCCCCCCCCCceeEeecCCCCCCCCCCC
Q 002323 794 QIVNVTTPANYFHVLRRQIHRGFRKPLIVISPKNLLRHKDCKSNLSEFDDVQGHPGFDKQGTRFKRLIKDQNGHSDLEEG 873 (936)
Q Consensus 794 ~Vv~pstpa~~fhlLrrq~~r~~~~Pli~~~pK~Llr~~~~~S~l~ef~~~~~~~~~~~pg~~F~~vi~d~~~~~~~~~~ 873 (936)
.|+.|+++.+...+|+.++. +.+.|+.+-.|+.=... ....+.++|.. |. .+|.+.+. ..+
T Consensus 480 ~V~~PaD~~E~~~~l~~al~-~~~gP~~irl~R~~~~~-~~~~~~~~~~~-----------G~--~vl~~~~~----~~~ 540 (654)
T PLN02790 480 LMLRPADGNETAGAYKVAVT-NRKRPTVLALSRQKVPN-LPGTSIEGVEK-----------GG--YVISDNSS----GNK 540 (654)
T ss_pred EEEeCCCHHHHHHHHHHHHH-cCCCCEEEEecCCCCCC-CCCCccccccc-----------Cc--EEEEeCCC----CCC
Confidence 99999999999999999886 34689999888653211 00111233332 33 45554310 001
Q ss_pred ccEEEEeCchhHHHHHHhhc
Q 002323 874 IRRLVLCSGKVFITSLMKGG 893 (936)
Q Consensus 874 v~rvilcsGkvyydL~~~r~ 893 (936)
-+-+|+++|-.....+++.+
T Consensus 541 ~dv~iia~G~~v~~Al~Aa~ 560 (654)
T PLN02790 541 PDLILIGTGSELEIAAKAAK 560 (654)
T ss_pred CCEEEEEcCHHHHHHHHHHH
Confidence 23499999998888777654
No 38
>PRK12754 transketolase; Reviewed
Probab=99.73 E-value=1.8e-15 Score=181.81 Aligned_cols=416 Identities=14% Similarity=0.126 Sum_probs=228.1
Q ss_pred ccCCCccccceeechhHHHHHhcCC--CCC---CceEEEEEecCcccCCCchHHHhhhcc---CCCCCccccEEEEEEeC
Q 002323 362 NPSHLEAVDPVVVGKTRAKQYYSHD--VDR---TKNMGVLIHGDGSFAGQGVVYETLHLS---ALPNYTTGGTIHIVVNN 433 (936)
Q Consensus 362 NPSHLeav~PVa~G~ArA~q~~~~d--~~~---~~~v~v~~hGDgA~sGQGvv~EtLNlA---~LP~Y~~GGtIhIV~NN 433 (936)
..++||.+.++|+|+|+|.++.+.. ..+ .+..++|+.|||.+. ||++||++|+| +|| -+|+||.||
T Consensus 112 stG~LGqGl~~AvG~AlA~k~~~~~~~~~~~~~~~~~v~~~~GDGel~-EG~~~EA~~~A~~~kL~-----nLi~ivD~N 185 (663)
T PRK12754 112 TTGPLGQGIANAVGMAIAEKTLAAQFNRPGHDIVDHYTYAFMGDGCMM-EGISHEVCSLAGTLKLG-----KLIAFYDDN 185 (663)
T ss_pred cCCcccchHHHHHHHHHHHHHhhhccCcccccccCCEEEEEECcchhh-chHHHHHHHHHHHhCCC-----CEEEEEEcC
Confidence 3566999999999999999987621 111 247899999999999 99999999999 998 247999999
Q ss_pred CcccccCCCCCCCcchh-----------h--H-HHHHHHHHHHHHHHc-cCCCEEEEEEeeecCCCCC-CCCC----CCC
Q 002323 434 QVAFTTDPRAGRSSQYC-----------T--D-AVVHVCELAAEWRQK-FHSDVVVDLVCYRRFGHNE-IDEP----SFT 493 (936)
Q Consensus 434 QigfTT~~~~~rss~y~-----------t--D-AV~~a~~~A~e~rr~-f~~pvlIdlv~YRr~GHne-~Ddp----~yt 493 (936)
+|+++++.+.+...... . | -=+.+...|++.+++ .++|++|++.|++-.|... .+.+ .-.
T Consensus 186 ~~~idg~~~~~~~~~~~~r~~a~Gw~vi~vvDG~D~~ai~~A~~~a~~~~~~Pt~I~~~T~~g~G~~~~e~~~~~Hg~~l 265 (663)
T PRK12754 186 GISIDGHVEGWFTDDTAMRFEAYGWHVIRGIDGHDADSIKRAVEEARAVTDKPSLLMCKTIIGFGSPNKAGTHDSHGAPL 265 (663)
T ss_pred CCccCcchhhccCccHHHHHHhcCCeEEeeECCCCHHHHHHHHHHHHhcCCCCEEEEEEeeeccCccccCCCccccCCCC
Confidence 99999988765432111 1 2 012233444444443 5899999999999999863 2322 123
Q ss_pred CHHHHHHHHcCCC--------HHHHHHHHH-HHcCCCCHHHHHHHHHHHHHHHHHHHHHhhhcCCCccchhhhhccCCCC
Q 002323 494 QPKMYQVIRSHPS--------AFEIYQKKL-LESAQVTQEDINRIQEKVNTILNEEFMASKDYVPKRRDWLSAYWAGFKS 564 (936)
Q Consensus 494 qp~~y~~i~~~~d--------pl~~y~~~L-i~eGilt~eei~~i~~~~~~~l~~a~~~A~~~~p~~~~~~~~~w~~~~~ 564 (936)
.+++++..++.-+ |-..|..+= .++| +...++|.+.+++.. +..|.....+...+.+ ..
T Consensus 266 ~~~~~~~~~~~l~~~~~~F~v~~~v~~~~~~~~~~---~~~~~~w~~~~~~~~--------~~~p~~~~~~~~~~~~-~~ 333 (663)
T PRK12754 266 GDAEIALTREQLGWKYAPFEIPSEIYAQWDAKEAG---QAKESAWNEKFAAYA--------KAYPQEAAEFTRRMKG-EM 333 (663)
T ss_pred CHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHhhhc---hHHHHHHHHHHHHHH--------HHCHHHHHHHHHHhcC-CC
Confidence 4566665442211 111111110 1111 111111222111111 1111111111111110 00
Q ss_pred cccccccCCCCCChHHHHHHHHHhccCCCCCCchhHHHHHHHHHHHHHhcCCcccHHHHHHHHhhhhhhcCCcEEEeccc
Q 002323 565 PEQVSRIRNTGVKPEILKNVGKAITNLPENFKPHRGVKKVYEQRAQMIETGEGIDWAVGEALAFATLLVEGNHVRLSGQD 644 (936)
Q Consensus 565 ~~~~~~~~~Tgv~~~~l~~i~~~~~~~P~~f~~h~~l~r~l~~R~~~~~~~~~iDWa~aE~LAfgsLl~eg~~Vrl~GqD 644 (936)
| +.+.. .+......+..-++ -+..|. +++++| -.|.....+|....-|
T Consensus 334 p--------~~~~~-~~~~~~~~~~~~~~----------~~atR~-----------~~~~~L--~~la~~~~~lv~~sAD 381 (663)
T PRK12754 334 P--------ADFDA-KAKEFIAKLQANPA----------KIASRK-----------ASQNAI--EAFGPLLPEFLGGSAD 381 (663)
T ss_pred c--------hhHHH-HHHHHhhhhccccc----------chHHHH-----------HHHHHH--HHHHhhCCCEEEEeCC
Confidence 0 00000 01111000000000 011221 112222 2334456777777677
Q ss_pred CCCcccccccceeeecCCCceeecCCCCcccCCCcceEEEccCcchhHHHHHHhhhcc-CCCCcceeeeccchhhhhhHH
Q 002323 645 VERGTFSHRHSVLHDQETGEKYCPLDHVMMNQDEEMFTVSNSSLSEFGVLGFELGYSM-ENPNSLVLWEAQFGDFANGAQ 723 (936)
Q Consensus 645 v~rGtF~~RHavl~dq~t~~~y~pL~~l~~~~~~g~~rV~nspLSE~avlG~e~G~sl-~g~~~LviwEaqFgDF~n~Aq 723 (936)
....|... +.-+..+. +. .+.|.+|.-|+|.+.+|++.|+++ .|.+|.+..=+.|.|++
T Consensus 382 l~~s~~~~-------------~~~~~~f~--~~-~p~r~i~~GIaE~~Mv~iaaGlA~~~G~~Pf~~tf~~F~~r~---- 441 (663)
T PRK12754 382 LAPSNLTL-------------WSGSKAIN--ED-AAGNYIHYGVREFGMTAIANGIALHGGFLPYTSTFLMFVEYA---- 441 (663)
T ss_pred cccccCcc-------------cccccccc--cc-CCCCeEeeccchhhHHHHHhhHHhcCCCeEEEEeeHHHHHHH----
Confidence 64322110 00012333 23 345899999999999999999999 67788766666666544
Q ss_pred HHHHHHHhhhhhhhcCccccEEEcCccC--CCC-CccccCchhhhhhhcCCCCCCcccCCCchhhhhccccceEEEEcCC
Q 002323 724 VIFDQFLSSGESKWLRQTGLVVLLPHGY--DGQ-GPEHSSARLERFLQMSDDNPFVIPEMDPTLRKQIQECNWQIVNVTT 800 (936)
Q Consensus 724 ~iidqfi~~~~~kw~~~s~lv~~lPhG~--~G~-GpeHSs~RiERfLQl~~~~~~~~~~~pg~~~~~~~~~N~~Vv~pst 800 (936)
.||...++ . .+.|+++..-|.. .|. ||.|.. || |..++-.+| ||.|+.|++
T Consensus 442 --~~qir~~a-~---~~l~V~~v~th~gi~~G~DG~THq~--iE--------dla~lR~iP----------n~~V~~PaD 495 (663)
T PRK12754 442 --RNAVRMAA-L---MKQRQVMVYTHDSIGLGEDGPTHQP--VE--------QVASLRVTP----------NMSTWRPCD 495 (663)
T ss_pred --HHHHHHHH-H---cCCCeEEEEECCccccCCCCCCccc--HH--------HHHHHhcCC----------CcEEecCCC
Confidence 34443322 1 1467766666643 344 899874 33 344566788 599999999
Q ss_pred HHHHHHHHHHHHhcCCCCcEEEEccccccCCCCCCCC-cccccccCCCCCCCCCCCceeEeecCCCCCCCCCCCccEEEE
Q 002323 801 PANYFHVLRRQIHRGFRKPLIVISPKNLLRHKDCKSN-LSEFDDVQGHPGFDKQGTRFKRLIKDQNGHSDLEEGIRRLVL 879 (936)
Q Consensus 801 pa~~fhlLrrq~~r~~~~Pli~~~pK~Llr~~~~~S~-l~ef~~~~~~~~~~~pg~~F~~vi~d~~~~~~~~~~v~rvil 879 (936)
+.+...+++.++.+ ...|+.+-.++.-+-....... ..+|.. |. .||.+... +. +-+|+
T Consensus 496 ~~E~~~~~~~a~~~-~~gP~yirl~R~~~p~~~~~~~~~~~~~~-----------G~--~vl~~~~~----~~--dv~ii 555 (663)
T PRK12754 496 QVESAVAWKYGVER-QDGPTALILSRQNLAQQERTEEQLANIAR-----------GG--YVLKDCAG----QP--ELIFI 555 (663)
T ss_pred HHHHHHHHHHHHhC-CCCCEEEEeCCCCCCCCCCccchhhhccc-----------Cc--EEEEecCC----CC--CEEEE
Confidence 99999999999873 2589888666532211100000 122321 33 45655321 12 34999
Q ss_pred eCchhHHHHHHhhc
Q 002323 880 CSGKVFITSLMKGG 893 (936)
Q Consensus 880 csGkvyydL~~~r~ 893 (936)
+||-.....+++.+
T Consensus 556 atGs~v~~Al~Aa~ 569 (663)
T PRK12754 556 ATGSEVELAVAAYE 569 (663)
T ss_pred EECHHHHHHHHHHH
Confidence 99998888776654
No 39
>PTZ00089 transketolase; Provisional
Probab=99.71 E-value=2.3e-15 Score=181.52 Aligned_cols=404 Identities=13% Similarity=0.126 Sum_probs=228.5
Q ss_pred cccCCCccccceeechhHHHHHhcCC--C---CCCceEEEEEecCcccCCCchHHHhhhcc---CCCCCccccEEEEEEe
Q 002323 361 ANPSHLEAVDPVVVGKTRAKQYYSHD--V---DRTKNMGVLIHGDGSFAGQGVVYETLHLS---ALPNYTTGGTIHIVVN 432 (936)
Q Consensus 361 ~NPSHLeav~PVa~G~ArA~q~~~~d--~---~~~~~v~v~~hGDgA~sGQGvv~EtLNlA---~LP~Y~~GGtIhIV~N 432 (936)
....|||...++|+|.|+|.++.+.. . +..+..++|+.|||+++ +|++||+||+| +|| -+|+||.|
T Consensus 113 ~~tG~lG~gls~AvG~A~a~k~~~~~~~~~~~~~~~~~v~~v~GDG~l~-eG~~~EAl~~A~~~~L~-----nLi~i~d~ 186 (661)
T PTZ00089 113 VTTGPLGQGIANAVGLAIAEKHLAAKFNRPGHPIFDNYVYVICGDGCLQ-EGVSQEALSLAGHLGLE-----KLIVLYDD 186 (661)
T ss_pred cCCcchhhhHHHHHHHHHHHHHHhhhccCccccCcCCEEEEEECccchh-hHHHHHHHHHHHHhCCC-----CEEEEEEC
Confidence 45678999999999999999987531 0 12247899999999999 99999999999 886 25899999
Q ss_pred CCcccccCCCCCCCcch-------------h---h-H--HHHHHHHHHHHHHHccCCCEEEEEEeeecCCCCCCCCCC--
Q 002323 433 NQVAFTTDPRAGRSSQY-------------C---T-D--AVVHVCELAAEWRQKFHSDVVVDLVCYRRFGHNEIDEPS-- 491 (936)
Q Consensus 433 NQigfTT~~~~~rss~y-------------~---t-D--AV~~a~~~A~e~rr~f~~pvlIdlv~YRr~GHne~Ddp~-- 491 (936)
|+++++++...+..... + . | +++.|.+.|.+. -++|++|++.|+|-.||.+.|...
T Consensus 187 N~~~i~~~~~~~~~~~~~~~f~a~G~~~i~v~dG~~D~~~l~~a~~~a~~~---~~~P~~I~~~T~kG~G~~~e~~~~~H 263 (661)
T PTZ00089 187 NKITIDGNTDLSFTEDVEKKYEAYGWHVIEVDNGNTDFDGLRKAIEEAKKS---KGKPKLIIVKTTIGYGSSKAGTEKVH 263 (661)
T ss_pred CCcccccCcccccCccHHHHHHhcCCcEEEeCCCCCCHHHHHHHHHHHHhc---CCCcEEEEEEeeecCCCCcCCCCCcc
Confidence 99999998865432211 1 1 3 666666665532 278999999999999998777653
Q ss_pred --CCCHHHHHHHHcC--CCHHHHHHHHHHHcCCCCHHHH----------HHHHHHHHHHHHHHHHHhhhcCCCccchhhh
Q 002323 492 --FTQPKMYQVIRSH--PSAFEIYQKKLLESAQVTQEDI----------NRIQEKVNTILNEEFMASKDYVPKRRDWLSA 557 (936)
Q Consensus 492 --ytqp~~y~~i~~~--~dpl~~y~~~Li~eGilt~eei----------~~i~~~~~~~l~~a~~~A~~~~p~~~~~~~~ 557 (936)
+..+++++..++. .||...| .++++.. +...+++.+.+.+..+. .|.....+..
T Consensus 264 ~~~~~~~~~~~~~~~l~~~~~~~f--------~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~----~~~~~~~l~~ 331 (661)
T PTZ00089 264 GAPLGDEDIAQVKELFGLDPEKKF--------HVSEEVRQFFEQHVEKKKENYEAWKKRFAKYTAA----FPKEAQAIER 331 (661)
T ss_pred CCCCCHHHHHHHHHHhCCCCCCCC--------CCCHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH----CHHHHHHHHH
Confidence 5566777766532 1111100 0011111 11111222222221111 1111000000
Q ss_pred hccCCCCcccccccCCCCCChHHHHHHHHHhccCCCCCCchhHHH------HHHHHHHHHHhcCCcccHHHHHHHHhhhh
Q 002323 558 YWAGFKSPEQVSRIRNTGVKPEILKNVGKAITNLPENFKPHRGVK------KVYEQRAQMIETGEGIDWAVGEALAFATL 631 (936)
Q Consensus 558 ~w~~~~~~~~~~~~~~Tgv~~~~l~~i~~~~~~~P~~f~~h~~l~------r~l~~R~~~~~~~~~iDWa~aE~LAfgsL 631 (936)
...+ .+|.++ ...+. +-...|. +++++|. .|
T Consensus 332 ~~~~----------------------------~~~~~~--~~~~~~~~~~~~~~a~R~-----------~~g~~L~--~l 368 (661)
T PTZ00089 332 RFKG----------------------------ELPPGW--EKKLPKYTTNDKAIATRK-----------ASENVLN--PL 368 (661)
T ss_pred Hhcc----------------------------CCchhh--hhhhhhhcccCcchHHHH-----------HHHHHHH--HH
Confidence 0000 011110 00000 0011111 1122221 22
Q ss_pred hhcCCcEEEecccCCCcccccccceeeecCCCceeecCCCCcccCCCcceEEEccCcchhHHHHHHhhhcc-CCCCccee
Q 002323 632 LVEGNHVRLSGQDVERGTFSHRHSVLHDQETGEKYCPLDHVMMNQDEEMFTVSNSSLSEFGVLGFELGYSM-ENPNSLVL 710 (936)
Q Consensus 632 l~eg~~Vrl~GqDv~rGtF~~RHavl~dq~t~~~y~pL~~l~~~~~~g~~rV~nspLSE~avlG~e~G~sl-~g~~~Lvi 710 (936)
......+...--|+...|+.. .+. ...+. +.+...|.+|.-|+|.+.++++.|+|+ .|.+|.+.
T Consensus 369 a~~~~~~~~~saDl~~s~~~~-------~~~------~~~f~--~~~P~~rfi~~GIaEq~mv~~AaGlA~~~G~~P~~~ 433 (661)
T PTZ00089 369 FQILPELIGGSADLTPSNLTR-------PKE------ANDFT--KASPEGRYIRFGVREHAMCAIMNGIAAHGGFIPFGA 433 (661)
T ss_pred HhhCCCeEEEECCCCcccCcC-------Ccc------ccccc--ccCCCCCeeeeeecHHHHHHHHHHHHHcCCCeEEEE
Confidence 223344554445554322211 000 01233 223216899999999999999999999 77788544
Q ss_pred eeccchhhhhhHHHHHHHHHhhhhhhhcCccccEEEcCc---cCCCCCccccCchhhhhhhcCCCCCCcccCCCchhhhh
Q 002323 711 WEAQFGDFANGAQVIFDQFLSSGESKWLRQTGLVVLLPH---GYDGQGPEHSSARLERFLQMSDDNPFVIPEMDPTLRKQ 787 (936)
Q Consensus 711 wEaqFgDF~n~Aq~iidqfi~~~~~kw~~~s~lv~~lPh---G~~G~GpeHSs~RiERfLQl~~~~~~~~~~~pg~~~~~ 787 (936)
.|.-|+. -..||+-..+ ....|+++..=| |+..-||.|..- ||..++-.+|
T Consensus 434 ---tf~~Fl~---Ra~dqir~~a----l~~lpV~~v~thdg~~~g~DG~THq~i----------edia~lR~iP------ 487 (661)
T PTZ00089 434 ---TFLNFYG---YALGAVRLAA----LSHHPVIYVATHDSIGLGEDGPTHQPV----------ETLALLRATP------ 487 (661)
T ss_pred ---ehHHHHH---HHHHHHHHHH----hcCCCeEEEEeCCceecCCCCCCcccH----------HHHHHHhcCC------
Confidence 4555543 3366732221 124688777644 333449999753 3344566788
Q ss_pred ccccceEEEEcCCHHHHHHHHHHHHhcCCCCcEEEEccccccCCCCCCCCcccccccCCCCCCCCCCCceeEeecCCCCC
Q 002323 788 IQECNWQIVNVTTPANYFHVLRRQIHRGFRKPLIVISPKNLLRHKDCKSNLSEFDDVQGHPGFDKQGTRFKRLIKDQNGH 867 (936)
Q Consensus 788 ~~~~N~~Vv~pstpa~~fhlLrrq~~r~~~~Pli~~~pK~Llr~~~~~S~l~ef~~~~~~~~~~~pg~~F~~vi~d~~~~ 867 (936)
||.|+.|+++.++..+|+.++. ..+.|+.+-.|+.=.. .-..+-.+|. .++ -.||.+..
T Consensus 488 ----n~~V~~PaD~~E~~~~l~~al~-~~~gP~~irl~R~~~~--~~~~~~~~~~----------~~g--~~vl~~~~-- 546 (661)
T PTZ00089 488 ----NLLVIRPADGTETSGAYALALA-NAKTPTILCLSRQNTP--PLPGSSIEGV----------LKG--AYIVVDFT-- 546 (661)
T ss_pred ----CcEEEecCCHHHHHHHHHHHHH-cCCCCEEEEecCCCCC--CcCCCccccc----------cCc--eEEEeccC--
Confidence 5999999999999999999984 2568999987764221 0000001121 112 13554421
Q ss_pred CCCCCCccEEEEeCchhHHHHHHhhcc
Q 002323 868 SDLEEGIRRLVLCSGKVFITSLMKGGR 894 (936)
Q Consensus 868 ~~~~~~v~rvilcsGkvyydL~~~r~~ 894 (936)
.. -+-+|+++|-.....+++.++
T Consensus 547 --~~--~dv~iia~G~~v~~Al~Aa~~ 569 (661)
T PTZ00089 547 --NS--PQLILVASGSEVSLCVEAAKA 569 (661)
T ss_pred --CC--CCEEEEeeCHHHHHHHHHHHH
Confidence 01 235999999998888776653
No 40
>PRK12753 transketolase; Reviewed
Probab=99.70 E-value=9.7e-15 Score=176.05 Aligned_cols=410 Identities=14% Similarity=0.135 Sum_probs=229.4
Q ss_pred ccCCCccccceeechhHHHHHhcCC--CC---CCceEEEEEecCcccCCCchHHHhhhcc---CCCCCccccEEEEEEeC
Q 002323 362 NPSHLEAVDPVVVGKTRAKQYYSHD--VD---RTKNMGVLIHGDGSFAGQGVVYETLHLS---ALPNYTTGGTIHIVVNN 433 (936)
Q Consensus 362 NPSHLeav~PVa~G~ArA~q~~~~d--~~---~~~~v~v~~hGDgA~sGQGvv~EtLNlA---~LP~Y~~GGtIhIV~NN 433 (936)
..+|||...++|+|+|+|.++.+.. .. -.+..++|+.|||++. +|++||++|+| +|| =+|+||.||
T Consensus 112 ~tG~lG~gl~~AvG~A~A~k~~~~~~~~~~~~~~~~~v~~~~GDGel~-EG~~~EA~~~A~~~kL~-----nLi~ivd~N 185 (663)
T PRK12753 112 TTGPLGQGLANAVGLAIAERTLAAQFNRPGHEIVDHYTYVFMGDGCLM-EGISHEVCSLAGTLGLG-----KLIGFYDHN 185 (663)
T ss_pred CCCcccccHHHHHHHHHHHHHhhhhcCCccccccCCEEEEEECcCccc-cHHHHHHHHHHHHHCCC-----CEEEEEECC
Confidence 5678999999999999999987531 10 0247899999999999 99999999999 886 267899999
Q ss_pred CcccccCCCCCCCcc-----------hhh--H-----HHHHHHHHHHHHHHccCCCEEEEEEeeecCCCCCC-CCCC---
Q 002323 434 QVAFTTDPRAGRSSQ-----------YCT--D-----AVVHVCELAAEWRQKFHSDVVVDLVCYRRFGHNEI-DEPS--- 491 (936)
Q Consensus 434 QigfTT~~~~~rss~-----------y~t--D-----AV~~a~~~A~e~rr~f~~pvlIdlv~YRr~GHne~-Ddp~--- 491 (936)
+++++++.....+.. |.. | ++++|.+.|.+ ..++|++|++.|++=.|+... +.+.
T Consensus 186 ~~~i~~~~~~~~~~~~~~~f~a~Gw~~~~~vDGhD~~~i~~a~~~a~~---~~~~P~~I~~~T~kG~G~~~~e~~~~~H~ 262 (663)
T PRK12753 186 GISIDGETEGWFTDDTAKRFEAYHWHVIHEIDGHDPQAIKEAILEAQS---VKDKPSLIICRTIIGFGSPNKAGKEESHG 262 (663)
T ss_pred CCcCCCChhhhcChhHHHHHHHcCCeEEceeCCCCHHHHHHHHHHHHH---CCCCeEEEEEEEeecCCCCcccCCCCccC
Confidence 999999877643221 111 2 77777777764 357899999999999999743 2221
Q ss_pred -CCCHHHHHHHHcCCCHHHHHHHHHHHcCCCCHHHHHHH---------HHHHHHHHHHHHHHhhhcCCCccchhhhhccC
Q 002323 492 -FTQPKMYQVIRSHPSAFEIYQKKLLESAQVTQEDINRI---------QEKVNTILNEEFMASKDYVPKRRDWLSAYWAG 561 (936)
Q Consensus 492 -ytqp~~y~~i~~~~dpl~~y~~~Li~eGilt~eei~~i---------~~~~~~~l~~a~~~A~~~~p~~~~~~~~~w~~ 561 (936)
--.+++++..++.-..- .+.=.+.++..+.+ +++..+.+ +..++..|.....+...+.+
T Consensus 263 ~~l~~~~~~~~~~~l~~~-------~~~F~v~~~v~~~~~~~~~~~~~~~~w~~~~----~~~~~~~p~~~~~~~~~~~~ 331 (663)
T PRK12753 263 APLGEEEVALTRQKLGWH-------HPPFEIPKEIYAAWDAREKGEKAEQAWNEKF----AAYKKAYPELAAEFTRRMSG 331 (663)
T ss_pred CCCCHHHHHHHHHHhCCC-------CCCCCCCHHHHHHHHhhhhchHHHHHHHHHH----HHHHHHCHHHHHHHHHHhcC
Confidence 12344444433110000 00000111111111 11111111 11111112111111111100
Q ss_pred CCCcccccccCCCCCChHHHHHHHHHhc---cCCCCCCchhHHHHHHHHHHHHHhcCCcccHHHHHHHHhhhhhhcCCcE
Q 002323 562 FKSPEQVSRIRNTGVKPEILKNVGKAIT---NLPENFKPHRGVKKVYEQRAQMIETGEGIDWAVGEALAFATLLVEGNHV 638 (936)
Q Consensus 562 ~~~~~~~~~~~~Tgv~~~~l~~i~~~~~---~~P~~f~~h~~l~r~l~~R~~~~~~~~~iDWa~aE~LAfgsLl~eg~~V 638 (936)
.++.+..+.+.+.+. .-|+. +..|. +++++| ..|.....+|
T Consensus 332 -------------~~p~~~~~~~~~~~~~~~~~~~~----------~a~r~-----------~~g~~L--~~l~~~~p~l 375 (663)
T PRK12753 332 -------------GLPKDWEKKTQKYINELQANPAK----------IATRK-----------ASQNTL--EAYGPLLPEL 375 (663)
T ss_pred -------------CCChhHHHHHHHHHHHhhccccc----------cHHHH-----------HHHHHH--HHHHhhCCCe
Confidence 011111111111110 00110 11111 122222 2344566778
Q ss_pred EEecccCCCcccccccceeeecCCCceeecCCCCcccCCCcceEEEccCcchhHHHHHHhhhcc-CCCCcceeeeccchh
Q 002323 639 RLSGQDVERGTFSHRHSVLHDQETGEKYCPLDHVMMNQDEEMFTVSNSSLSEFGVLGFELGYSM-ENPNSLVLWEAQFGD 717 (936)
Q Consensus 639 rl~GqDv~rGtF~~RHavl~dq~t~~~y~pL~~l~~~~~~g~~rV~nspLSE~avlG~e~G~sl-~g~~~LviwEaqFgD 717 (936)
.+..-|+..-+- | .+.-...+. ++ .+.|.+|.-|+|.+.++++.|.|+ .|.+|.+-.=+.|.|
T Consensus 376 v~~sADl~~S~~-----------~--~~~~~~~f~--~~-~p~r~i~~GIaEq~mv~~aaGlA~~~G~~P~~~tf~~F~~ 439 (663)
T PRK12753 376 LGGSADLAPSNL-----------T--IWSGSKSLK--ED-PAGNYIHYGVREFGMTAIANGIAHHGGFVPYTATFLMFVE 439 (663)
T ss_pred EEEccccccccC-----------c--ccccccchh--hc-CCCCEEEeeecHHHHHHHHHHHHHhCCCeEEEEehHHHHH
Confidence 777788753111 0 000001232 22 345999999999999999999999 788886554444444
Q ss_pred hhhhHHHHHHHHHhhhhhhhcCccccEEEcCc-cC-CCC-CccccCchhhhhhhcCCCCCCcccCCCchhhhhccccceE
Q 002323 718 FANGAQVIFDQFLSSGESKWLRQTGLVVLLPH-GY-DGQ-GPEHSSARLERFLQMSDDNPFVIPEMDPTLRKQIQECNWQ 794 (936)
Q Consensus 718 F~n~Aq~iidqfi~~~~~kw~~~s~lv~~lPh-G~-~G~-GpeHSs~RiERfLQl~~~~~~~~~~~pg~~~~~~~~~N~~ 794 (936)
++ .||...++- ...|+++..-| |+ .|. ||.|..- ||..++-.+| ||.
T Consensus 440 r~------~~qir~~a~----~~l~V~~v~thdg~~~G~DG~THq~i----------edla~lR~iP----------n~~ 489 (663)
T PRK12753 440 YA------RNAARMAAL----MKARQIMVYTHDSIGLGEDGPTHQPV----------EQLASLRLTP----------NFS 489 (663)
T ss_pred HH------HHHHHHHHh----cCCCeEEEEeCCCcccCCCCcccccH----------HHHHHHhcCC----------CCE
Confidence 33 566543221 23577776444 44 344 8999643 3445667788 599
Q ss_pred EEEcCCHHHHHHHHHHHHhcCCCCcEEEEccccccCCCCCC-CCcccccccCCCCCCCCCCCceeEeecCCCCCCCCCCC
Q 002323 795 IVNVTTPANYFHVLRRQIHRGFRKPLIVISPKNLLRHKDCK-SNLSEFDDVQGHPGFDKQGTRFKRLIKDQNGHSDLEEG 873 (936)
Q Consensus 795 Vv~pstpa~~fhlLrrq~~r~~~~Pli~~~pK~Llr~~~~~-S~l~ef~~~~~~~~~~~pg~~F~~vi~d~~~~~~~~~~ 873 (936)
|+.|+++.+...+++.++.. .+.|+.+..++.=.-..... ...++|.. |. .||.|.+. ..
T Consensus 490 v~~PaD~~E~~~~~~~al~~-~~gP~~irl~R~~~~~~~~~~~~~~~~~~-----------G~--~vl~~~~~----~~- 550 (663)
T PRK12753 490 TWRPCDQVEAAVAWKLAIER-HNGPTALILSRQNLAQQERTPEQVKNIAR-----------GG--YILKDSGG----KP- 550 (663)
T ss_pred EEccCCHHHHHHHHHHHHhc-CCCCEEEEecCCCCCCCCCcccchhhccC-----------Cc--EEEeccCC----CC-
Confidence 99999999999999999862 46899887765422110000 01122322 32 55655321 12
Q ss_pred ccEEEEeCchhHHHHHHhhc
Q 002323 874 IRRLVLCSGKVFITSLMKGG 893 (936)
Q Consensus 874 v~rvilcsGkvyydL~~~r~ 893 (936)
+-+|++||-.....+++.+
T Consensus 551 -dv~iia~Gs~v~~al~Aa~ 569 (663)
T PRK12753 551 -DLILIATGSEVEITLQAAE 569 (663)
T ss_pred -CEEEEEeCHHHHHHHHHHH
Confidence 3489999998888776654
No 41
>cd07033 TPP_PYR_DXS_TK_like Pyrimidine (PYR) binding domain of 1-deoxy-D-xylulose-5-phosphate synthase (DXS), transketolase (TK), and related proteins. Thiamine pyrophosphate (TPP) family, pyrimidine (PYR) binding domain of 1-deoxy-D-xylulose-5-phosphate synthase (DXS), transketolase (TK), and the beta subunits of the E1 component of the human pyruvate dehydrogenase complex (E1- PDHc), subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included
Probab=99.66 E-value=3e-16 Score=157.11 Aligned_cols=145 Identities=12% Similarity=0.190 Sum_probs=119.1
Q ss_pred hhhhcCCcEEEecccCCCcccccccceeeecCCCceeecCCCCcccCCCcceEEEccCcchhHHHHHHhhhccCCCCcce
Q 002323 630 TLLVEGNHVRLSGQDVERGTFSHRHSVLHDQETGEKYCPLDHVMMNQDEEMFTVSNSSLSEFGVLGFELGYSMENPNSLV 709 (936)
Q Consensus 630 sLl~eg~~Vrl~GqDv~rGtF~~RHavl~dq~t~~~y~pL~~l~~~~~~g~~rV~nspLSE~avlG~e~G~sl~g~~~Lv 709 (936)
.++.++.+|.+.|+|+..++ . + +++. +++ +.|++|++|+|.+++|.+.|.|+.|.+|
T Consensus 9 ~~~~~~~~~v~~~~Dl~~~~--~---------~-------~~~~--~~~-p~r~i~~gIaE~~~vg~A~GlA~~G~~p-- 65 (156)
T cd07033 9 ELAKKDPRIVALSADLGGST--G---------L-------DKFA--KKF-PDRFIDVGIAEQNMVGIAAGLALHGLKP-- 65 (156)
T ss_pred HHHhhCCCEEEEECCCCCCC--C---------c-------HHHH--HhC-CCCeEEeChhHHHHHHHHHHHHHCCCeE--
Confidence 45778999999999997532 1 3 6676 666 7899999999999999999999999888
Q ss_pred eeeccchhhhhhHHHHHHHHHhhhhhhhcCccccEEEcCccC-C--CCCccccCchhhhhhhcCCCCCCcccCCCchhhh
Q 002323 710 LWEAQFGDFANGAQVIFDQFLSSGESKWLRQTGLVVLLPHGY-D--GQGPEHSSARLERFLQMSDDNPFVIPEMDPTLRK 786 (936)
Q Consensus 710 iwEaqFgDF~n~Aq~iidqfi~~~~~kw~~~s~lv~~lPhG~-~--G~GpeHSs~RiERfLQl~~~~~~~~~~~pg~~~~ 786 (936)
|+|.+ .+|..-| +||+.+.. .++ +.|++++.+||. . +.||.|++- ++..+|.++||
T Consensus 66 i~~~~-~~f~~ra---~dqi~~~~-a~~--~~pv~~~~~~~g~~~~~~G~tH~~~----------~~~a~~~~iPg---- 124 (156)
T cd07033 66 FVSTF-SFFLQRA---YDQIRHDV-ALQ--NLPVKFVGTHAGISVGEDGPTHQGI----------EDIALLRAIPN---- 124 (156)
T ss_pred EEEEC-HHHHHHH---HHHHHHHH-hcc--CCCeEEEEECCcEecCCCCcccchH----------HHHHHhcCCCC----
Confidence 99999 9999877 77766433 444 489999999874 3 479999764 23357788996
Q ss_pred hccccceEEEEcCCHHHHHHHHHHHHhcCCCCcEEEEccc
Q 002323 787 QIQECNWQIVNVTTPANYFHVLRRQIHRGFRKPLIVISPK 826 (936)
Q Consensus 787 ~~~~~N~~Vv~pstpa~~fhlLrrq~~r~~~~Pli~~~pK 826 (936)
++|+.|++|.|++.+|+.++. .++|++|..||
T Consensus 125 ------~~v~~Ps~~~~~~~ll~~a~~--~~~P~~irl~~ 156 (156)
T cd07033 125 ------MTVLRPADANETAAALEAALE--YDGPVYIRLPR 156 (156)
T ss_pred ------CEEEecCCHHHHHHHHHHHHh--CCCCEEEEeeC
Confidence 999999999999999999998 67899997764
No 42
>smart00861 Transket_pyr Transketolase, pyrimidine binding domain. Transketolase (TK) catalyzes the reversible transfer of a two-carbon ketol unit from xylulose 5-phosphate to an aldose receptor, such as ribose 5-phosphate, to form sedoheptulose 7-phosphate and glyceraldehyde 3- phosphate. This enzyme, together with transaldolase, provides a link between the glycolytic and pentose-phosphate pathways. TK requires thiamine pyrophosphate as a cofactor. In most sources where TK has been purified, it is a homodimer of approximately 70 Kd subunits. TK sequences from a variety of eukaryotic and prokaryotic sources show that the enzyme has been evolutionarily conserved. In the peroxisomes of methylotrophic yeast Hansenula polymorpha, there is a highly related enzyme, dihydroxy-acetone synthase (DHAS) (also known as formaldehyde transketolase), which exhibits a very unusual specificity by including formaldehyde amongst its substrates.
Probab=99.63 E-value=2.6e-15 Score=151.32 Aligned_cols=160 Identities=27% Similarity=0.313 Sum_probs=117.2
Q ss_pred HHHHHHhhhhhhcCC-cEEEecccCCCcccccccceeeecCCCceeecCCCCcccCCCcceEEEccCcchhHHHHHHhhh
Q 002323 622 VGEALAFATLLVEGN-HVRLSGQDVERGTFSHRHSVLHDQETGEKYCPLDHVMMNQDEEMFTVSNSSLSEFGVLGFELGY 700 (936)
Q Consensus 622 ~aE~LAfgsLl~eg~-~Vrl~GqDv~rGtF~~RHavl~dq~t~~~y~pL~~l~~~~~~g~~rV~nspLSE~avlG~e~G~ 700 (936)
.+-..++..++.++. +|+++|+|++.+++..++.++.+++. + ++.|++|++|+|.+++|++.|+
T Consensus 4 ~~~~~~l~~~~~~~~~~v~~~~~D~~~~~~~~~~~~~~~~~~---------~------~~~R~~~~gIaE~~~vg~a~Gl 68 (168)
T smart00861 4 KAFGEALAELAERDPERVVVSGADVGGSTGLDRGGVFPDTKG---------L------GPGRVIDTGIAEQAMVGFAAGL 68 (168)
T ss_pred HHHHHHHHHHHhhCCCcEEEEehhhCcCcCCCcCCccCCCCC---------C------CCccEEEcCcCHHHHHHHHHHH
Confidence 344455567777744 89999999998777665554444332 1 5678999999999999999999
Q ss_pred ccCCCCcceeeeccchhhhhhHHHHHHHHHhhhhhhhcCccccEEEcCcc-CCCC-CccccCchhhhhhhcCCCCCCccc
Q 002323 701 SMENPNSLVLWEAQFGDFANGAQVIFDQFLSSGESKWLRQTGLVVLLPHG-YDGQ-GPEHSSARLERFLQMSDDNPFVIP 778 (936)
Q Consensus 701 sl~g~~~LviwEaqFgDF~n~Aq~iidqfi~~~~~kw~~~s~lv~~lPhG-~~G~-GpeHSs~RiERfLQl~~~~~~~~~ 778 (936)
|+.|.+| |++.++.+| .-| .||+...+..+ ..++|+..+.| +.|. ||.|++.+.+ .++.
T Consensus 69 A~~G~~p--i~~~~~~f~-~~a---~~~~~~~~~~~---~~~~v~~~~~g~~~g~~G~tH~~~~~~----------~~~~ 129 (168)
T smart00861 69 ALAGLRP--VVAIFFTFF-DRA---KDQIRSDGAMG---RVPVVVRHDSGGGVGEDGPTHHSQEDE----------ALLR 129 (168)
T ss_pred HHcCCCc--EEEeeHHHH-HHH---HHHHHHhCccc---CCCEEEEecCccccCCCCccccchhHH----------HHHh
Confidence 9999866 777665544 466 45554444333 67888888654 4666 9988877444 4556
Q ss_pred CCCchhhhhccccceEEEEcCCHHHHHHHHHHHHhcCCCCc-EEEEccc
Q 002323 779 EMDPTLRKQIQECNWQIVNVTTPANYFHVLRRQIHRGFRKP-LIVISPK 826 (936)
Q Consensus 779 ~~pg~~~~~~~~~N~~Vv~pstpa~~fhlLrrq~~r~~~~P-li~~~pK 826 (936)
++|+ ++|+.|++|.|++++|+.++.+ .++| +|++++|
T Consensus 130 ~iP~----------~~v~~P~~~~e~~~~l~~a~~~-~~~p~~i~~~~~ 167 (168)
T smart00861 130 AIPG----------LKVVAPSDPAEAKGLLRAAIRR-DDGPPVIRLERK 167 (168)
T ss_pred cCCC----------cEEEecCCHHHHHHHHHHHHhC-CCCCEEEEecCC
Confidence 7885 9999999999999999999963 2456 7777766
No 43
>PRK11864 2-ketoisovalerate ferredoxin oxidoreductase subunit beta; Provisional
Probab=99.21 E-value=1.3e-10 Score=128.09 Aligned_cols=208 Identities=16% Similarity=0.129 Sum_probs=130.5
Q ss_pred CCCchHHHHHhhcCCCHH-HHHHhhcCCCC------CCCCCCCccCCCCcccccccccCCCCCCCceeeeeeccccCCCc
Q 002323 295 PHRGRLNVLGNVVRKPLR-QIFSEFSGGTK------PVDEDGLYTGTGDVKYHLGTSYDRPTRGGKRIHLSLVANPSHLE 367 (936)
Q Consensus 295 ~HRgrlnvLa~vlg~p~~-~ifaEf~G~~~------~~~~G~~~ggsGDVkyHlG~s~~~~~~~g~~I~lsl~~NPSHLe 367 (936)
-||||..+... |.++. .++.+.+|+.+ |+..+. +|. ||+... + ++ .+ -+..|
T Consensus 14 ~~~gh~~C~GC--G~~~~~~~l~~~lg~~~v~~~~iGC~~~~--~g~----~p~~~~-~--~~---~i-------~~~~G 72 (300)
T PRK11864 14 FYPGNAACPGC--GAPLGLRYLLKALGEKTVLVIPASCSTVI--QGD----TPKSPL-T--VP---VL-------HTAFA 72 (300)
T ss_pred ecCCCccCCCC--CCHHHHHHHHHHhCCCeEEEeCCCcccee--cCC----CCcccc-c--cc---ce-------eehhh
Confidence 47888877766 77777 78888888765 554432 233 465322 1 11 12 24489
Q ss_pred cccceeechhHHHHHhcCCCCCCceEEEEEecCcccCCCchHHHhhhcc---CCCCCccccEEEEEEeCCcccccCCCCC
Q 002323 368 AVDPVVVGKTRAKQYYSHDVDRTKNMGVLIHGDGSFAGQGVVYETLHLS---ALPNYTTGGTIHIVVNNQVAFTTDPRAG 444 (936)
Q Consensus 368 av~PVa~G~ArA~q~~~~d~~~~~~v~v~~hGDgA~sGQGvv~EtLNlA---~LP~Y~~GGtIhIV~NNQigfTT~~~~~ 444 (936)
.+.|+|.|.++|.+.++++ ...+|++.|||++. +|.+ |+||+| ++| +++||+||++...|--..+
T Consensus 73 ~~~~~A~G~a~A~~~~~~~----~~~Vva~~GDG~~~-~~g~-~~l~~A~~~~~~------v~~vv~dN~~~~~TGgQ~S 140 (300)
T PRK11864 73 ATAAVASGIEEALKARGEK----GVIVVGWAGDGGTA-DIGF-QALSGAAERNHD------ILYIMYDNEAYMNTGIQRS 140 (300)
T ss_pred ChHHHHHHHHHHHHhhCCC----CcEEEEEEccCccc-cccH-HHHHHHHHhCcC------EEEEEECCeeeecCCCCCC
Confidence 9999999999998876543 24455599999999 7776 999999 999 9999999999999854443
Q ss_pred CCcchhh--------------H----------------------HHHHHHHHHHHHHHccCCCEEEEEEeeecCCCCCCC
Q 002323 445 RSSQYCT--------------D----------------------AVVHVCELAAEWRQKFHSDVVVDLVCYRRFGHNEID 488 (936)
Q Consensus 445 rss~y~t--------------D----------------------AV~~a~~~A~e~rr~f~~pvlIdlv~YRr~GHne~D 488 (936)
-+|+... | .+.++++.|++ .+||.||++.+ ..-++-.-
T Consensus 141 ~~Tp~ga~t~tsp~G~~~~kkdi~~i~~a~g~~yVA~~~~~~~~~~~~~i~~A~~----~~Gps~I~~~s--pC~~~~~~ 214 (300)
T PRK11864 141 SSTPYGAWTTTTPGGKREHKKPVPDIMAAHKVPYVATASIAYPEDFIRKLKKAKE----IRGFKFIHLLA--PCPPGWRF 214 (300)
T ss_pred CCCcCCCccccCCCCCcCCCCCHHHHHHHcCCCEEEEEeCCCHHHHHHHHHHHHh----CCCCEEEEEeC--CCCCCCCc
Confidence 3332220 1 66666666664 78999998754 33333322
Q ss_pred CCCCCCHHHHHHH--------------------------HcCCCHHHHHHHHHHHcC---CCCHHHHHHHHHHHHHHHHH
Q 002323 489 EPSFTQPKMYQVI--------------------------RSHPSAFEIYQKKLLESA---QVTQEDINRIQEKVNTILNE 539 (936)
Q Consensus 489 dp~ytqp~~y~~i--------------------------~~~~dpl~~y~~~Li~eG---ilt~eei~~i~~~~~~~l~~ 539 (936)
++..+....-.+. ++.+-|+ +++|..+| .+.+|+++++++++.++.+.
T Consensus 215 ~~~~~~~~~k~Av~tg~wplye~~~g~~~~~~~~~~~~~~~~~~pv---~~~l~~q~Rf~~L~~~~~~~~q~~vd~~~~~ 291 (300)
T PRK11864 215 DPDKTIEIARLAVETGVWPLFEYENGKFKLNSPSKTLLDKKKRKPV---EEYLKLQGRFKHLTEEEIKGLQEEIDEMWEE 291 (300)
T ss_pred ChHHHHHHHHHHHHcCCceEEEEECCEEEEccCCccccccccCCCH---HHHHhhccchhcCCHHHHHHHHHHHHHHHHH
Confidence 2211111111111 0112344 44555555 46788888888777776665
Q ss_pred HHHHh
Q 002323 540 EFMAS 544 (936)
Q Consensus 540 a~~~A 544 (936)
-...+
T Consensus 292 ~~~~~ 296 (300)
T PRK11864 292 IKKLA 296 (300)
T ss_pred HHHHH
Confidence 44333
No 44
>cd02007 TPP_DXS Thiamine pyrophosphate (TPP) family, DXS subfamily, TPP-binding module; 1-Deoxy-D-xylulose-5-phosphate synthase (DXS) is a regulatory enzyme of the mevalonate-independent pathway involved in terpenoid biosynthesis. Terpeniods are plant natural products with important pharmaceutical activity. DXS catalyzes a transketolase-type condensation of pyruvate with D-glyceraldehyde-3-phosphate to form 1-deoxy-D-xylulose-5-phosphate (DXP) and carbon dioxide. The formation of DXP leads to the formation of the terpene precursor IPP (isopentyl diphosphate) and to the formation of thiamine (vitamin B1) and pyridoxal (vitamin B6).
Probab=99.19 E-value=3.2e-11 Score=125.51 Aligned_cols=106 Identities=17% Similarity=0.295 Sum_probs=83.8
Q ss_pred cccCCCccccceeechhHHHHHhcCCCCCCceEEEEEecCcccCCCchHHHhhhcc---CCCCCccccEEEEEEeCCccc
Q 002323 361 ANPSHLEAVDPVVVGKTRAKQYYSHDVDRTKNMGVLIHGDGSFAGQGVVYETLHLS---ALPNYTTGGTIHIVVNNQVAF 437 (936)
Q Consensus 361 ~NPSHLeav~PVa~G~ArA~q~~~~d~~~~~~v~v~~hGDgA~sGQGvv~EtLNlA---~LP~Y~~GGtIhIV~NNQigf 437 (936)
...++||...|+|+|.|+|.++++.+ ..++|++|||+++ ||.++|+|++| ++| +|+||.||++++
T Consensus 72 ~~~G~lG~gl~~A~G~Ala~k~~~~~-----~~vv~~~GDG~~~-eG~~~Eal~~A~~~~~~------li~vvdnN~~~~ 139 (195)
T cd02007 72 FGTGHSSTSISAALGMAVARDLKGKK-----RKVIAVIGDGALT-GGMAFEALNNAGYLKSN------MIVILNDNEMSI 139 (195)
T ss_pred ECCCchhhhHHHHHHHHHHHHHhCCC-----CeEEEEEcccccc-cChHHHHHHHHHHhCCC------EEEEEECCCccc
Confidence 35678999999999999999988765 7899999999999 99999999999 889 999999999999
Q ss_pred ccCCCCCC----C--cchh--hH-----HHHHHHHHHHHHHHccCCCEEEEEEeeecC
Q 002323 438 TTDPRAGR----S--SQYC--TD-----AVVHVCELAAEWRQKFHSDVVVDLVCYRRF 482 (936)
Q Consensus 438 TT~~~~~r----s--s~y~--tD-----AV~~a~~~A~e~rr~f~~pvlIdlv~YRr~ 482 (936)
+++..+.. + -.+. .| ++.+|++.| ++.++|++|++.|+.=.
T Consensus 140 ~~~~~~~~~~~~a~G~~~~~~vdG~d~~~l~~a~~~a----~~~~~P~~I~~~T~kg~ 193 (195)
T cd02007 140 SPNVGTPGNLFEELGFRYIGPVDGHNIEALIKVLKEV----KDLKGPVLLHVVTKKGK 193 (195)
T ss_pred CCCCCCHHHHHHhcCCCccceECCCCHHHHHHHHHHH----HhCCCCEEEEEEEeccc
Confidence 98754211 1 0111 12 665555544 45689999999998643
No 45
>PRK05261 putative phosphoketolase; Provisional
Probab=99.06 E-value=9.4e-08 Score=116.54 Aligned_cols=180 Identities=18% Similarity=0.194 Sum_probs=111.4
Q ss_pred cCCcchhhhhHHHHHHHHhhCCC---Cc--EEecCCCCchHHHHH-hhcC-----CC--------HHHHHHhhcCCCCCC
Q 002323 265 LEGGETLIPGMKEMFDRAADLGV---ES--IVIGMPHRGRLNVLG-NVVR-----KP--------LRQIFSEFSGGTKPV 325 (936)
Q Consensus 265 leG~Eali~gl~~li~~A~~~Gv---~D--ivigM~HRgrlnvLa-~vlg-----~p--------~~~ifaEf~G~~~~~ 325 (936)
+.|+=+..||+..+.-....+.- -| +|+|.-|=+-+.+-. .+.| .| +..+|.+|-- .
T Consensus 48 ~~GHwGt~pgln~vyahln~li~~~~~~~~~V~g~GHg~p~~~a~~~L~Gs~~~~yp~is~d~~gl~~lfrqfs~-p--- 123 (785)
T PRK05261 48 LLGHWGTTPGLNFIYAHLNRLIRKYDLNMIYITGPGHGGPAMVANAYLEGTYSEIYPEITQDEEGMARLFKQFSF-P--- 123 (785)
T ss_pred cCCCCCCcHHHHHHHHHHHHHHhhcCCceEEEeCCCccHHHHHHHHHHcCCCcccCCCCCccHHHHHHHHHhccC-C---
Confidence 78888888888776533322222 24 788865655443321 2235 22 4457777721 1
Q ss_pred CCCCCccCCCCcccccccccCCCCCCCceeeeeeccccCCCccccceeechhHHHHHhcCCCCCCceEEEEEecCcccCC
Q 002323 326 DEDGLYTGTGDVKYHLGTSYDRPTRGGKRIHLSLVANPSHLEAVDPVVVGKTRAKQYYSHDVDRTKNMGVLIHGDGSFAG 405 (936)
Q Consensus 326 ~~G~~~ggsGDVkyHlG~s~~~~~~~g~~I~lsl~~NPSHLeav~PVa~G~ArA~q~~~~d~~~~~~v~v~~hGDgA~sG 405 (936)
|| +..|.. . .+++ +....+.||...++|+|+|++. .+ .+++|++|||++.
T Consensus 124 ------gg---~~sH~~-~---~tPG-------i~~~~G~LG~gls~A~G~Al~~----~d-----~iv~~~vGDGE~E- 173 (785)
T PRK05261 124 ------GG---IPSHAA-P---ETPG-------SIHEGGELGYSLSHAYGAAFDN----PD-----LIVACVVGDGEAE- 173 (785)
T ss_pred ------CC---cCCCCC-C---CCCC-------eeeCCCchhhHHHHHHHHHHcC----CC-----CEEEEEECcCchh-
Confidence 11 225663 1 1221 2334566999999999999643 23 6999999999998
Q ss_pred CchH---HHhhhccCCCCCccccEEEEEEeCCcccccCCCCCCCc--chh---------------hH--HHHHHHHHHHH
Q 002323 406 QGVV---YETLHLSALPNYTTGGTIHIVVNNQVAFTTDPRAGRSS--QYC---------------TD--AVVHVCELAAE 463 (936)
Q Consensus 406 QGvv---~EtLNlA~LP~Y~~GGtIhIV~NNQigfTT~~~~~rss--~y~---------------tD--AV~~a~~~A~e 463 (936)
+|.+ +++.++. -.+..|-++-|+-+|+|.++++...++.+ ... .| +|+.++..|++
T Consensus 174 eG~lAa~W~~~~~~--~~~~~g~vLPIld~Ng~~Is~pt~~~~~~~e~l~~rf~g~Gw~~i~VDG~D~~av~~a~a~al~ 251 (785)
T PRK05261 174 TGPLATSWHSNKFL--NPATDGAVLPILHLNGYKIANPTILARISDEELEALFRGYGYEPYFVEGDDPADMHQEMAAALD 251 (785)
T ss_pred hhhhHHHhhhhhhc--ccccCCCEEEEEEecCCcCCCCccccccCcHhHHHHHHHCCCeeEEECCCCHHHHHHHHHHHHH
Confidence 9985 7776664 33455667777778999999998866532 100 12 66666655555
Q ss_pred HH-----------Hcc---CCCE--EEEEEeee
Q 002323 464 WR-----------QKF---HSDV--VVDLVCYR 480 (936)
Q Consensus 464 ~r-----------r~f---~~pv--lIdlv~YR 480 (936)
++ |.. .+|. +|.+.|--
T Consensus 252 ~~i~~i~~iq~~Ar~~~~~~~P~wp~Ii~rT~k 284 (785)
T PRK05261 252 TAIEEIRAIQKEAREGGDTTRPRWPMIVLRTPK 284 (785)
T ss_pred HHHHHHHHHHHHHHhCCCCCCCCceEEEEECCc
Confidence 43 334 5888 99888754
No 46
>COG1154 Dxs Deoxyxylulose-5-phosphate synthase [Coenzyme metabolism / Lipid metabolism]
Probab=99.02 E-value=4.9e-08 Score=114.35 Aligned_cols=171 Identities=16% Similarity=0.233 Sum_probs=117.6
Q ss_pred cceEEEccCcchhHHHHHHhhhccCCCCcceeeeccchhhhhhHHHHHHHHHhhhhhhhcCccccEEEcC-ccCCCC-Cc
Q 002323 679 EMFTVSNSSLSEFGVLGFELGYSMENPNSLVLWEAQFGDFANGAQVIFDQFLSSGESKWLRQTGLVVLLP-HGYDGQ-GP 756 (936)
Q Consensus 679 g~~rV~nspLSE~avlG~e~G~sl~g~~~LviwEaqFgDF~n~Aq~iidqfi~~~~~kw~~~s~lv~~lP-hG~~G~-Gp 756 (936)
.|.|.+|.-|+|...+-|+.|+|.+|.+|. =+.+.-|..-| +||.+--- -.+.-|+++-+= -|..|. ||
T Consensus 356 fP~R~fDVGIAEQHAVT~AAGlA~~G~kPv---vaIYSTFLQRA---YDQliHDv---aiqnLPV~faIDRAGivG~DG~ 426 (627)
T COG1154 356 FPDRFFDVGIAEQHAVTFAAGLAAEGMKPV---VAIYSTFLQRA---YDQLIHDV---AIQNLPVTFAIDRAGIVGADGP 426 (627)
T ss_pred CchhheehhhhHHHHHHHHHHHHhCCCCCE---EEEecHHHHHH---HHHHHHHH---HhccCCeEEEEecCcccCCCCC
Confidence 478999999999999999999999999993 36788888777 77776422 123467777665 666555 99
Q ss_pred cccCchhhhhhhcCCCCCCcccCCCchhhhhccccceEEEEcCCHHHHHHHHHHHHhcCCC-CcEEEEccccccCCCCCC
Q 002323 757 EHSSARLERFLQMSDDNPFVIPEMDPTLRKQIQECNWQIVNVTTPANYFHVLRRQIHRGFR-KPLIVISPKNLLRHKDCK 835 (936)
Q Consensus 757 eHSs~RiERfLQl~~~~~~~~~~~pg~~~~~~~~~N~~Vv~pstpa~~fhlLrrq~~r~~~-~Pli~~~pK~Llr~~~~~ 835 (936)
.|.-. | |-.++..+| ||.|+.|++.+...++|+.++. .+ .|+.|=.|+.---.....
T Consensus 427 TH~G~----f------Dls~l~~iP----------nmvi~aP~de~el~~ml~ta~~--~~~gP~AiRyPrg~~~~~~~~ 484 (627)
T COG1154 427 THQGL----F------DLSFLRCIP----------NMVIMAPRDEEELRQMLYTALA--QDDGPVAIRYPRGNGVGVILT 484 (627)
T ss_pred ccccH----H------HHHHHhcCC----------CcEEecCCCHHHHHHHHHHHHh--cCCCCeEEEecCCCCCCCCcc
Confidence 99866 2 224566788 5999999999999999999998 66 699998886532111000
Q ss_pred CCcccccccCCCCCCCCCCCceeEeecCCCCCCCCCCCccEEEEeCchhHHHHHHhhcc---cCCceee
Q 002323 836 SNLSEFDDVQGHPGFDKQGTRFKRLIKDQNGHSDLEEGIRRLVLCSGKVFITSLMKGGR---SAVQVML 901 (936)
Q Consensus 836 S~l~ef~~~~~~~~~~~pg~~F~~vi~d~~~~~~~~~~v~rvilcsGkvyydL~~~r~~---~~~~~~~ 901 (936)
..++.+ +-|. -+++.. .+ +-+|++.|..++.-++..++ .++++-+
T Consensus 485 ~~~~~~-----------~~Gk-~~i~~~-------G~--~vail~~G~~~~~al~vae~L~~~Gi~~TV 532 (627)
T COG1154 485 PELEPL-----------EIGK-GELLKE-------GE--KVAILAFGTMLPEALKVAEKLNAYGISVTV 532 (627)
T ss_pred cccccc-----------cccc-eEEEec-------CC--cEEEEecchhhHHHHHHHHHHHhcCCCcEE
Confidence 001222 2244 223322 22 34999999999876665543 4444433
No 47
>TIGR03186 AKGDH_not_PDH alpha-ketoglutarate dehydrogenase. Several bacterial species have a paralog to homodimeric form of the pyruvate dehydrogenase E1 component (see model TIGR00759), often encoded next to L-methionine gamma-lyase gene (mdeA). The member from a strain of Pseudomonas putida was shown to act on alpha-ketobutyrate, which is produced by MdeA.This model serves as an exception model to TIGR00759, as other proteins hitting TIGR00759 should be identified as the pyruvate dehydrogenase E1 component.
Probab=98.91 E-value=8.5e-07 Score=109.57 Aligned_cols=444 Identities=14% Similarity=0.184 Sum_probs=241.3
Q ss_pred CccccceeechhHHHHHhcCC--CCCCceEEEEEecCcccCCCchHHHhhhcc---CCCCCccccEEEEEEeCCcccccC
Q 002323 366 LEAVDPVVVGKTRAKQYYSHD--VDRTKNMGVLIHGDGSFAGQGVVYETLHLS---ALPNYTTGGTIHIVVNNQVAFTTD 440 (936)
Q Consensus 366 Leav~PVa~G~ArA~q~~~~d--~~~~~~v~v~~hGDgA~sGQGvv~EtLNlA---~LP~Y~~GGtIhIV~NNQigfTT~ 440 (936)
||-..++++|.|+|.++.... ....+.=+.|+.|||-+. +|.++|++.+| +|. -+|+||-+|.+.+..+
T Consensus 191 LGqGl~~AvG~Ala~kyl~~r~~~~~~~~rVy~llGDGEl~-EG~~wEA~~~Aa~~kLd-----NLi~IvD~N~~qlDG~ 264 (889)
T TIGR03186 191 MGIGPINAIYQARFMRYLQNRGLARTEGRKVWGFFGDGEMD-EPESIGALSLAARERLD-----NLVFVINCNLQRLDGP 264 (889)
T ss_pred chHHHHHHHHHHHHHHHHhhccccCCCCceEEEEEcchhhc-cHHHHHHHHHHHHhCCC-----CEEEEEeCCCCccCCc
Confidence 999999999999998854321 122335688999999999 99999999999 675 5899999999988877
Q ss_pred CCCCCCcchhhHHHHHHHHHHHHHHHccCCCEEEEEEeeecCCCC-----CCCCC-------CCCCHHHHHHHHcCCCHH
Q 002323 441 PRAGRSSQYCTDAVVHVCELAAEWRQKFHSDVVVDLVCYRRFGHN-----EIDEP-------SFTQPKMYQVIRSHPSAF 508 (936)
Q Consensus 441 ~~~~rss~y~tDAV~~a~~~A~e~rr~f~~pvlIdlv~YRr~GHn-----e~Ddp-------~ytqp~~y~~i~~~~dpl 508 (936)
.+..-. ....-.+.-+.|+=.|+ +++ ||-. .-|.. .=+.-.+|+..+. ++.-
T Consensus 265 t~~~~~----------~~e~l~~kf~a~GW~vi-~v~----wG~~wd~l~~~d~~~~L~~~~~~~~dg~yq~~~~-~~ga 328 (889)
T TIGR03186 265 VRGNGR----------IIDELESQFAGAGWNVI-KVL----WGSDWDALFARDATGALARAFAHTVDGQFQTFSA-NDGA 328 (889)
T ss_pred cccccc----------cchHHHHHHHhCCCEEE-EEe----ecCchHHhhccccchHHHHHHHhcccHHHHHHhh-cchH
Confidence 653111 00111122233544444 331 1211 00000 0012234555442 2211
Q ss_pred HHHHH----------HHHHcCCCCHHHHHHHHHHH--HHHHHHHHHHhhhcC--CCccchhhhhccCCCCccccc----c
Q 002323 509 EIYQK----------KLLESAQVTQEDINRIQEKV--NTILNEEFMASKDYV--PKRRDWLSAYWAGFKSPEQVS----R 570 (936)
Q Consensus 509 ~~y~~----------~Li~eGilt~eei~~i~~~~--~~~l~~a~~~A~~~~--p~~~~~~~~~w~~~~~~~~~~----~ 570 (936)
-.++ .|++ -+|++|+.++...= -..|.+|++.|++.. |.. .+..--.++-.+.... .
T Consensus 329 -~~R~~ff~~~~~~~~lv~--~~sD~~i~~l~rgGHD~~~i~~A~~~A~~~~~~PTv--Ila~TvkG~G~~~~g~~~~~~ 403 (889)
T TIGR03186 329 -YNRARFFGQDPALAALVA--HLSDEDIDRLRRGGHDARKLYAAYDRAVRHEGRPTV--ILAKTMKGFGMGAIGQGRMTT 403 (889)
T ss_pred -HHHHHhcCccHHHHHHhh--cccHHhhhhhcCCCCCHHHHHHHHHHHHhCCCCCEE--EEEEeeecCCCCcccCccccc
Confidence 1122 2333 36777776664321 345666776666432 432 1111111111111000 0
Q ss_pred cCCCCCChHHHHHHHHHhccCCC--C-CC---------chhHHHHHHHHHHHHHh-------cCC-c-----------cc
Q 002323 571 IRNTGVKPEILKNVGKAITNLPE--N-FK---------PHRGVKKVYEQRAQMIE-------TGE-G-----------ID 619 (936)
Q Consensus 571 ~~~Tgv~~~~l~~i~~~~~~~P~--~-f~---------~h~~l~r~l~~R~~~~~-------~~~-~-----------iD 619 (936)
.....++.+.++.+-+++ .+|- + .+ -.+.++.+.++|...-- ... . +.
T Consensus 404 H~~~~l~~e~~~~~r~~~-g~~~~de~~~~~~~~~~~~~s~~~~~l~~~r~~l~g~~p~r~~~~~~~~~~p~~~~~~~~~ 482 (889)
T TIGR03186 404 HQQKKLDVEALLAFRDRF-RLPLSDADVEQLKFYKPDEDSAEMRYLHARRAALGGYLPRRRTAATHALAVPALPSWGRFA 482 (889)
T ss_pred cCcCcCCHHHHHHHHHHc-CCCCChHHhhcccccCCCCCCHHHHHHHHHHHHcCCCCCCCCCCCccccCCCCcchhhhhh
Confidence 111334555555555554 2221 1 11 12244444444432110 000 0 00
Q ss_pred -----HHHHHHHHhhhh---hhc----CCcEEEecccCCC-----------cccccccceeeecCCCceeecCCC--Ccc
Q 002323 620 -----WAVGEALAFATL---LVE----GNHVRLSGQDVER-----------GTFSHRHSVLHDQETGEKYCPLDH--VMM 674 (936)
Q Consensus 620 -----Wa~aE~LAfgsL---l~e----g~~Vrl~GqDv~r-----------GtF~~RHavl~dq~t~~~y~pL~~--l~~ 674 (936)
=-++=.+||+.+ |.. |.+|+-.--|+.| |.|+. .|..|.|-.. +..
T Consensus 483 ~~~~~~~~sT~~Af~r~l~~L~~~~~~~~riV~i~pD~a~t~gm~~~f~~~gi~~~---------~gq~y~~~d~~~~~~ 553 (889)
T TIGR03186 483 LDAEGKEMSTTMAIVRMLGALLKDAELGPRIVPIVADEARTFGMANLFRQVGIYSP---------LGQRYEPEDLGSMLY 553 (889)
T ss_pred ccCCCCcccHHHHHHHHHHHHHhCccccCCEEEeCCcccccCCchhhhccccccCc---------ccccCCccchHHHHH
Confidence 012336788877 332 6678888888875 55666 6777888652 110
Q ss_pred cCCCcceEEEccCcchhHHHH--HHhhhccC----CCCcceeeeccchhhhhhHHHHHHHHHhhhhhhhcCccccEEEcC
Q 002323 675 NQDEEMFTVSNSSLSEFGVLG--FELGYSME----NPNSLVLWEAQFGDFANGAQVIFDQFLSSGESKWLRQTGLVVLLP 748 (936)
Q Consensus 675 ~~~~g~~rV~nspLSE~avlG--~e~G~sl~----g~~~LviwEaqFgDF~n~Aq~iidqfi~~~~~kw~~~s~lv~~lP 748 (936)
=.+..+.|++|.-|+|...+| .+.|.|++ +..|++++=++|+ .|-..||+-+++-. ...+..+=.+
T Consensus 554 y~e~~p~R~ie~GIAEqnmv~~~iAAGlA~a~~G~g~iPf~~tya~F~-----~~Ra~Dqir~a~~~---~a~v~lvG~~ 625 (889)
T TIGR03186 554 YREDTDGQILEEGISEAGAISSWIAAATSYSVHDLPMLPFYIYYSMFG-----FQRIGDLIWAAADQ---RARGFLIGAT 625 (889)
T ss_pred HhhcCCCcEEEechhhHHHHHHHHHHHHhhhhcCCCceEEEEehHHhH-----hhhHHHHHHHHhhc---CCCcEEEEEC
Confidence 023468899999999999999 88886666 5578777666654 25667887765321 1233333456
Q ss_pred ccC---CCCCccccCchhhhhhhcCCCCCCcccCCCchhhhhccccceEEEEcCCHHHHHHHHHHHHhc---C-CCCcEE
Q 002323 749 HGY---DGQGPEHSSARLERFLQMSDDNPFVIPEMDPTLRKQIQECNWQIVNVTTPANYFHVLRRQIHR---G-FRKPLI 821 (936)
Q Consensus 749 hG~---~G~GpeHSs~RiERfLQl~~~~~~~~~~~pg~~~~~~~~~N~~Vv~pstpa~~fhlLrrq~~r---~-~~~Pli 821 (936)
+|. .+-|++|-+- ||..++..+| ||.|+.|+.+.+...+++..++| + .+.|+-
T Consensus 626 aG~tTlg~eG~tHq~~----------eDial~r~iP----------n~tv~~PaDa~E~a~iv~~~~~rm~~~~~~gp~Y 685 (889)
T TIGR03186 626 SGKTTLGGEGLQHQDG----------TSHLAASTVP----------NCRAWDPAFAYEVAVIVDEGMREMLERQRDEFYY 685 (889)
T ss_pred CCccCCCCCcccccch----------HhHHHHhhCC----------CCEEEeCCCHHHHHHHHHHHHHHHHhcCCCceEE
Confidence 666 2448888754 4445666788 49999999999999998865542 2 345766
Q ss_pred EEccccccCCCCCCCC-ccc----ccccCCCCCCCCCCCcee--EeecCCCCCCCCCCCccEEEEeCchhHHHHHHhhcc
Q 002323 822 VISPKNLLRHKDCKSN-LSE----FDDVQGHPGFDKQGTRFK--RLIKDQNGHSDLEEGIRRLVLCSGKVFITSLMKGGR 894 (936)
Q Consensus 822 ~~~pK~Llr~~~~~S~-l~e----f~~~~~~~~~~~pg~~F~--~vi~d~~~~~~~~~~v~rvilcsGkvyydL~~~r~~ 894 (936)
+= |.|.+..... .++ |.. |.-+ -++.+.. .+.-+-.|++||-+-.+.+++.+.
T Consensus 686 lR----l~r~~~~~p~~~~~~~~~~~~-----------gi~kg~y~l~~~~-----~~g~dV~LlasG~~v~eAL~AAe~ 745 (889)
T TIGR03186 686 LT----VTNENYAQPSLPEDRLDAVRR-----------GILKGMYPLDPAA-----LAAARVQLLGSGAILGEVQAAARL 745 (889)
T ss_pred EE----eCCCCCCCCCcCCCcccchhc-----------chhheeeEeeccC-----CCCCCEEEEeccHHHHHHHHHHHH
Confidence 53 3333221111 111 221 1111 2233321 122245899999999988877654
No 48
>PRK09405 aceE pyruvate dehydrogenase subunit E1; Reviewed
Probab=98.85 E-value=1.7e-06 Score=107.00 Aligned_cols=454 Identities=16% Similarity=0.198 Sum_probs=236.2
Q ss_pred CccccceeechhHHHHHhcCC--CCCCceEEEEEecCcccCCCchHHHhhhcc---CCCCCccccEEEEEEeCCcccccC
Q 002323 366 LEAVDPVVVGKTRAKQYYSHD--VDRTKNMGVLIHGDGSFAGQGVVYETLHLS---ALPNYTTGGTIHIVVNNQVAFTTD 440 (936)
Q Consensus 366 Leav~PVa~G~ArA~q~~~~d--~~~~~~v~v~~hGDgA~sGQGvv~EtLNlA---~LP~Y~~GGtIhIV~NNQigfTT~ 440 (936)
+|...+.++|.|++.++...- .+..+.=++|+.|||-+. +|.++|++.+| +|. -+|+||-.|......+
T Consensus 197 ~G~G~~~a~~~A~~~kyl~~~~~~~~~~~rv~~~~GDGEld-Eg~~~EA~~~A~~~~Ld-----NLi~ivD~N~q~lDG~ 270 (891)
T PRK09405 197 MGLGPIMAIYQARFLKYLENRGLKDTSDQKVWAFLGDGEMD-EPESLGAISLAAREKLD-----NLIFVINCNLQRLDGP 270 (891)
T ss_pred cchhHHHHHHHHHhCccccccccccCCCceEEEEEcchhhc-cHHHHHHHHHHHHhCCC-----CEEEEEECCCcccCCc
Confidence 666667889999998853211 122346688999999999 99999999999 665 4889999998888777
Q ss_pred CCCCCCcchhhHHHHHHHHHHHHHHHccCCCEEEEEEeeecCC-CCCCCCC-------CCCCHHHHHHHHcCCCHHH---
Q 002323 441 PRAGRSSQYCTDAVVHVCELAAEWRQKFHSDVVVDLVCYRRFG-HNEIDEP-------SFTQPKMYQVIRSHPSAFE--- 509 (936)
Q Consensus 441 ~~~~rss~y~tDAV~~a~~~A~e~rr~f~~pvlIdlv~YRr~G-Hne~Ddp-------~ytqp~~y~~i~~~~dpl~--- 509 (936)
.+..-. .. -.++- .-+.++=.| |+++==|.+- =-.-|.. .=+...+|+..+. ++.-.
T Consensus 271 v~~~~~--~~-------~~l~~-~f~a~GW~V-i~v~wG~~wd~l~~~d~~g~L~~~~~~~~Dg~yq~~~~-~~ga~~R~ 338 (891)
T PRK09405 271 VRGNGK--II-------QELEG-IFRGAGWNV-IKVIWGSRWDPLLAKDTSGKLVQLMNETVDGDYQTYKA-KDGAYVRE 338 (891)
T ss_pred cccccc--cc-------hhHHH-HHhhCCCEE-EEEeccccchhhhccCCccHHHHHHHhCCcHHHHHHHh-cccHHHHH
Confidence 653111 00 01111 222343333 4442111110 0000000 0011223444331 11110
Q ss_pred HH------HHHHHHcCCCCHHHHHHHHHHH--HHHHHHHHHHhhhcC--CCccchhhhhccCCCCcccccc----cCCCC
Q 002323 510 IY------QKKLLESAQVTQEDINRIQEKV--NTILNEEFMASKDYV--PKRRDWLSAYWAGFKSPEQVSR----IRNTG 575 (936)
Q Consensus 510 ~y------~~~Li~eGilt~eei~~i~~~~--~~~l~~a~~~A~~~~--p~~~~~~~~~w~~~~~~~~~~~----~~~Tg 575 (936)
.| -+.|++ -+|++|+.++...= -.+|.+|++.|++.+ |.. .+..--++.-.+..... .....
T Consensus 339 ~ffg~~~~~~~lv~--~~sD~~i~~l~~gGHD~~~i~~A~~~A~~~~~~Ptv--Iia~TvkG~G~~~~~e~~~~~H~~~~ 414 (891)
T PRK09405 339 HFFGKYPETKALVA--DMSDDDIWALNRGGHDPRKVYAAYKAAVEHKGQPTV--ILAKTIKGYGMGEAGEGKNIAHQVKK 414 (891)
T ss_pred HhcCCCHHHHHHHh--hCCHHHHHHhccCCCCHHHHHHHHHHHHhCCCCCEE--EEEeceecCCCCcccCCCccccCCCC
Confidence 01 123444 36777777664211 235666776665432 431 11111111111000000 11123
Q ss_pred CChHHHHHHHHHhccCC------CC-----CC-chhHHHHHHHHHHHHH-------------hcCCcccHH---------
Q 002323 576 VKPEILKNVGKAITNLP------EN-----FK-PHRGVKKVYEQRAQMI-------------ETGEGIDWA--------- 621 (936)
Q Consensus 576 v~~~~l~~i~~~~~~~P------~~-----f~-~h~~l~r~l~~R~~~~-------------~~~~~iDWa--------- 621 (936)
++.+.++.+-+.+ .+| ++ |. -.+.++.+.++|...- .--...++.
T Consensus 415 l~~e~~~~~r~~~-g~~~~d~~~~~~~~~~~~~~s~e~~~l~~~r~~l~g~~p~r~~~~~~~~~P~~~~~~~~~~~~~~~ 493 (891)
T PRK09405 415 LDLDDLKHFRDRF-NIPISDEQLEKLPYYKPGEDSPEIKYLHERRKALGGYLPARRPKFEPLEVPALSAFEALLKGSGER 493 (891)
T ss_pred CCHHHHHHHHHHc-CCCCChhHhccCCCcCCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCCCCCChhhHHHhhccCCCC
Confidence 4555555554443 333 11 00 1224444444443221 000011121
Q ss_pred -HHHHHHhhh----hhhc---CCcEEEecccCCC-----------cccccccceeeecCCCceeecCCCCcc--cCCCcc
Q 002323 622 -VGEALAFAT----LLVE---GNHVRLSGQDVER-----------GTFSHRHSVLHDQETGEKYCPLDHVMM--NQDEEM 680 (936)
Q Consensus 622 -~aE~LAfgs----Ll~e---g~~Vrl~GqDv~r-----------GtF~~RHavl~dq~t~~~y~pL~~l~~--~~~~g~ 680 (936)
++=.+||+. |+.+ |.+|+..=-|+.| |.|+. .|..|.|-..=.. =.+.-+
T Consensus 494 ~~sT~~Afgr~L~~L~~~~~~~~riV~i~pD~a~t~g~~~~f~~~gi~~~---------~gq~y~~~d~~~~~~yke~~P 564 (891)
T PRK09405 494 EISTTMAFVRILNILLKDKEIGKRIVPIIPDEARTFGMEGLFRQIGIYNP---------HGQLYTPVDRDQLMYYKESKD 564 (891)
T ss_pred cccHHHHHHHHHHHHHhccccCCcEEEeccccccccCcchhhcccccccc---------ccccccccccHHHHHHHHcCC
Confidence 133456654 4454 8899999999986 55666 6777888753210 023358
Q ss_pred eEEEccCcchhHHHH--HHhhhccC----CCCcceeeeccchhhhhhHHHHHHHHHhhhhhhhcCccccEEEcCccC---
Q 002323 681 FTVSNSSLSEFGVLG--FELGYSME----NPNSLVLWEAQFGDFANGAQVIFDQFLSSGESKWLRQTGLVVLLPHGY--- 751 (936)
Q Consensus 681 ~rV~nspLSE~avlG--~e~G~sl~----g~~~LviwEaqFgDF~n~Aq~iidqfi~~~~~kw~~~s~lv~~lPhG~--- 751 (936)
.|++|.-|+|...+| .+.|.|++ +..|+++.=++|| .|-..||+-+++-+. ..+..|..-||.
T Consensus 565 gRf~e~GIAEqnmv~~~vAAGlA~a~~G~g~iPF~~tya~F~-----~~Ra~Dqir~a~~~~---~~~v~iggt~gg~tl 636 (891)
T PRK09405 565 GQILQEGINEAGAMASWIAAATSYSTHGEPMIPFYIYYSMFG-----FQRIGDLAWAAGDQR---ARGFLLGGTAGRTTL 636 (891)
T ss_pred CcEEEechhhhHHHHHHHHHHHhhhhcCCCceEEEEehHHhh-----hhhHHHHHHHHHHhc---CCCeEEEEECccccC
Confidence 899999999999999 88886666 5578777666654 356678876655331 234444433443
Q ss_pred CCCCccccCchhhhhhhcCCCCCCcccCCCchhhhhccccceEEEEcCCHHHHHHHHHHHHhc---CCCCcEEEEccccc
Q 002323 752 DGQGPEHSSARLERFLQMSDDNPFVIPEMDPTLRKQIQECNWQIVNVTTPANYFHVLRRQIHR---GFRKPLIVISPKNL 828 (936)
Q Consensus 752 ~G~GpeHSs~RiERfLQl~~~~~~~~~~~pg~~~~~~~~~N~~Vv~pstpa~~fhlLrrq~~r---~~~~Pli~~~pK~L 828 (936)
.|-|++|-+. ++..++..+| ||.|+.|+.+.+...+++..++| ....|...++=
T Consensus 637 ~~eG~qHqdg----------~s~~l~raiP----------n~tv~~PADa~E~a~iv~~~l~rm~~~~~~~~yYlrl--- 693 (891)
T PRK09405 637 NGEGLQHEDG----------HSHILASTIP----------NCVSYDPAFAYEVAVIVQDGLRRMYGEQENVFYYITV--- 693 (891)
T ss_pred CCCcccCCch----------hhHHHHhhCC----------CCEEEeCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEe---
Confidence 4568888765 2223455678 49999999999999999998763 33333433321
Q ss_pred cCCCCCCCC-cccccccCCCCCCCCCCCceeEeecCCCCCCCCCCCccEEEEeCchhHHHHHHhhcc
Q 002323 829 LRHKDCKSN-LSEFDDVQGHPGFDKQGTRFKRLIKDQNGHSDLEEGIRRLVLCSGKVFITSLMKGGR 894 (936)
Q Consensus 829 lr~~~~~S~-l~ef~~~~~~~~~~~pg~~F~~vi~d~~~~~~~~~~v~rvilcsGkvyydL~~~r~~ 894 (936)
+..+..... .+++.. ++ +.=--++.+... +..+-+-.|++||-+-...+++.+.
T Consensus 694 ~ne~~~~~~~pe~~~~-------~i--gKg~y~Lr~g~~---~~~~~dV~LlasG~~v~eAL~AAe~ 748 (891)
T PRK09405 694 MNENYHQPAMPEGAEE-------GI--LKGMYKLETAEG---KKGKPKVQLLGSGTILREVLEAAEI 748 (891)
T ss_pred CCCCCCCCCCCccccc-------cc--ceEEEEeccCCC---CCCCCCEEEEeccHHHHHHHHHHHH
Confidence 111111111 022211 00 111022333221 1222356899999999988877653
No 49
>PRK13012 2-oxoacid dehydrogenase subunit E1; Provisional
Probab=98.79 E-value=2.3e-06 Score=106.13 Aligned_cols=445 Identities=16% Similarity=0.205 Sum_probs=232.5
Q ss_pred CccccceeechhHHHHHhcCC--CCCCceEEEEEecCcccCCCchHHHhhhcc---CCCCCccccEEEEEEeCCcccccC
Q 002323 366 LEAVDPVVVGKTRAKQYYSHD--VDRTKNMGVLIHGDGSFAGQGVVYETLHLS---ALPNYTTGGTIHIVVNNQVAFTTD 440 (936)
Q Consensus 366 Leav~PVa~G~ArA~q~~~~d--~~~~~~v~v~~hGDgA~sGQGvv~EtLNlA---~LP~Y~~GGtIhIV~NNQigfTT~ 440 (936)
||-..+.|+|.|++.++.... .+....=+.|+.|||-+. +|.++|++.+| +|. -+|+||-+|......+
T Consensus 205 lG~G~~~ai~~A~~~ryl~~~g~~~~~~~~v~~~lGDGEl~-Eg~~~eA~~~A~~~~Ld-----NLi~ivD~N~~~lDG~ 278 (896)
T PRK13012 205 MGIGPINAIYQARFMRYLQHRGLKDTSGRKVWGFFGDGEMD-EPESIAALSLAAREGLD-----NLVFVINCNLQRLDGP 278 (896)
T ss_pred chHHHHHHHHHHHhcccccccccccCCCCeEEEEEchhhhc-cHHHHHHHHHHHHhCCC-----cEEEEEECCCccccCc
Confidence 888889999999998854221 122346688999999999 99999999999 665 4888888898877776
Q ss_pred CCCCCCcchhhHHHHHHHHHHHHHHHccCCCEEEEEEeeecCC-CCCCCCCC-------CCCHHHHHHHHcCCCHHHHHH
Q 002323 441 PRAGRSSQYCTDAVVHVCELAAEWRQKFHSDVVVDLVCYRRFG-HNEIDEPS-------FTQPKMYQVIRSHPSAFEIYQ 512 (936)
Q Consensus 441 ~~~~rss~y~tDAV~~a~~~A~e~rr~f~~pvlIdlv~YRr~G-Hne~Ddp~-------ytqp~~y~~i~~~~dpl~~y~ 512 (936)
.+..-.- .-.++-.| +.++=. +|+++==|.+- =-.-|... =+.-.+|+..+. ++.- -.+
T Consensus 279 v~~~~~~---------~~~l~~~f-~a~GW~-Vi~v~wg~~wd~l~~~d~~~~l~~~~~~~~Dg~yq~~~~-~~g~-~~r 345 (896)
T PRK13012 279 VRGNGRI---------IQELEALF-RGAGWN-VIKVLWGSDWDALFARDTTGALVRRFAETVDGQFQTFKA-NDGA-YNR 345 (896)
T ss_pred ccccccc---------chHHHHHH-HhCCCE-EEEEecccchHHHhcCCCccHHHHHHHhCCcHHHHHHhh-cchH-HHH
Confidence 5431110 01122222 233333 34442111110 00000000 011123444331 2211 111
Q ss_pred H----------HHHHcCCCCHHHHHHHHHH--HHHHHHHHHHHhhhcC--CCccchhhhhccCCCCcc--cc--cccCCC
Q 002323 513 K----------KLLESAQVTQEDINRIQEK--VNTILNEEFMASKDYV--PKRRDWLSAYWAGFKSPE--QV--SRIRNT 574 (936)
Q Consensus 513 ~----------~Li~eGilt~eei~~i~~~--~~~~l~~a~~~A~~~~--p~~~~~~~~~w~~~~~~~--~~--~~~~~T 574 (936)
+ .|++ -+|++|+.++..- =-.+|.+|++.|++.. |.. .+..--++.-.+. +. ......
T Consensus 346 ~~ff~~~~~~~~lv~--~~~d~~i~~l~rgGHD~~~i~~A~~~a~~~~~~Ptv--Ila~TvkG~G~~~~~e~~~~~H~~~ 421 (896)
T PRK13012 346 EHFFGQDPELAALVA--HLSDEDIDRLKRGGHDPRKVYAAYAAAVRHKGQPTV--ILAKTKKGYGMGEAGEGRMTTHQQK 421 (896)
T ss_pred HHhccccHHHHHHhh--cccHHhhhhhcCCCCCHHHHHHHHHHHHhCCCCCEE--EEEEeeecCCCCcccCCCcccccCC
Confidence 2 2333 3666766655421 1234556666555322 431 1111111111010 00 001112
Q ss_pred CCChHHHHHHHHHhccCCCC--------CC----chhHHHHHHHHHHHHHhc--------------CCcccHH-------
Q 002323 575 GVKPEILKNVGKAITNLPEN--------FK----PHRGVKKVYEQRAQMIET--------------GEGIDWA------- 621 (936)
Q Consensus 575 gv~~~~l~~i~~~~~~~P~~--------f~----~h~~l~r~l~~R~~~~~~--------------~~~iDWa------- 621 (936)
..+.+.++.+-+.+ .+|.. |. ..+.++.+.++| +.+.. ....+|.
T Consensus 422 ~l~~e~~~~~r~~~-g~p~~d~~~~~~pf~~p~~~~~~~~~l~~r~-~~l~g~~P~r~~~~~~l~~p~~~~~~~~~~~~~ 499 (896)
T PRK13012 422 KLDVEALKAFRDRF-RLPLSDEQLEQLPFYKPAEDSPEMRYLHARR-AALGGYLPRRRTAAPPLPVPPLSAFAQFALGAG 499 (896)
T ss_pred CCCHHHHHHHHHHc-CCCCChhhhccCCCcCCccccHHHHHHHHHH-HHhcCcCCcccccccccCCCchhhHHHhhcccC
Confidence 34555566665554 33321 22 123444433333 32220 0112332
Q ss_pred ---HHHHHHhhh----hhhc---CCcEEEecccCCC-----------cccccccceeeecCCCceeec-----CCCCccc
Q 002323 622 ---VGEALAFAT----LLVE---GNHVRLSGQDVER-----------GTFSHRHSVLHDQETGEKYCP-----LDHVMMN 675 (936)
Q Consensus 622 ---~aE~LAfgs----Ll~e---g~~Vrl~GqDv~r-----------GtF~~RHavl~dq~t~~~y~p-----L~~l~~~ 675 (936)
++=.+||+. |+.+ +.+|+..--|+.| |+|+. .|..|.| +....
T Consensus 500 ~~~isTr~Afgr~L~~L~k~~~~~~~iV~i~aDla~t~gm~~~f~~~~i~~~---------~gq~y~~~d~~~~~~yk-- 568 (896)
T PRK13012 500 GKEMSTTMAFVRMLGNLLKDKALGPRIVPIVADEARTFGMANLFRQVGIYSP---------LGQLYEPEDAGSLLYYR-- 568 (896)
T ss_pred CCcchHHHHHHHHHHHHHhccccCCCEEEeccccccccCccccccccccccc---------ccccccccchhHHhhhh--
Confidence 233456654 4555 8888878788874 44444 4566777 22232
Q ss_pred CCCcceEEEccCcchhHHHH--HHhhhccC--C--CCcceeeeccchhhhhhHHHHHHHHHhhhhhhhcCccccEEEcCc
Q 002323 676 QDEEMFTVSNSSLSEFGVLG--FELGYSME--N--PNSLVLWEAQFGDFANGAQVIFDQFLSSGESKWLRQTGLVVLLPH 749 (936)
Q Consensus 676 ~~~g~~rV~nspLSE~avlG--~e~G~sl~--g--~~~LviwEaqFgDF~n~Aq~iidqfi~~~~~kw~~~s~lv~~lPh 749 (936)
+. -+.|++|.-|+|.+.+| .+.|.+++ | ..|+++.=++| ++|-+.||+-+++-++ ..++.+...|
T Consensus 569 e~-~pgR~ie~GIaEqnm~~~~~AAG~a~a~~G~g~iPf~~tfs~F-----~~~R~~Dqir~a~~~~---~~~vlig~T~ 639 (896)
T PRK13012 569 EA-KDGQILEEGITEAGAISSWIAAATSYSVHGLPMLPFYIYYSMF-----GFQRVGDLIWAAADQR---ARGFLLGATA 639 (896)
T ss_pred hC-CCCcEEecchhhhhhhHHHHHHHhhHHhcCCCcEEEEEehHHH-----HHHHHHHHHHHHHhcc---cCCeEEEEeC
Confidence 22 46899999999999977 55555554 4 47765554433 4577788876555332 3457777788
Q ss_pred cC---CCCCccccCchhhhhhhcCCCCCCcccCCCchhhhhccccceEEEEcCCHHHHHHHHHHHHhc--CC--CCcEEE
Q 002323 750 GY---DGQGPEHSSARLERFLQMSDDNPFVIPEMDPTLRKQIQECNWQIVNVTTPANYFHVLRRQIHR--GF--RKPLIV 822 (936)
Q Consensus 750 G~---~G~GpeHSs~RiERfLQl~~~~~~~~~~~pg~~~~~~~~~N~~Vv~pstpa~~fhlLrrq~~r--~~--~~Pli~ 822 (936)
|. .+-||+|-.- | +..++..+| |+.|+.|+.+.+...+++..++| .. +.|..+
T Consensus 640 gg~tlg~dG~THQ~~--e--------slal~RaIP----------N~~V~~PADa~E~a~iv~~al~~m~~~~~~~p~YI 699 (896)
T PRK13012 640 GRTTLGGEGLQHQDG--H--------SHLLASTIP----------NCRAYDPAFAYELAVIVDDGMRRMLEEQEDVFYYL 699 (896)
T ss_pred cccccCCCCCCCcch--H--------hHHHHHhCC----------CCEEEeCCCHHHHHHHHHHHHHHHHhccCCCeEEE
Confidence 75 4668999765 3 233455677 59999999999999999987754 22 556444
Q ss_pred EccccccCCCCCCCC-cccccccCCCCCCCCCCCceeEeecCCCCCCCCCCCccEEEEeCchhHHHHHHhhcc
Q 002323 823 ISPKNLLRHKDCKSN-LSEFDDVQGHPGFDKQGTRFKRLIKDQNGHSDLEEGIRRLVLCSGKVFITSLMKGGR 894 (936)
Q Consensus 823 ~~pK~Llr~~~~~S~-l~ef~~~~~~~~~~~pg~~F~~vi~d~~~~~~~~~~v~rvilcsGkvyydL~~~r~~ 894 (936)
- |.|.+..... .+++.. ++ .. |. -+|.+.. +.. +-.|++||-+-...+++.+.
T Consensus 700 r----L~r~~~~~p~~~~~~~~-----~i-~k-G~--y~l~~~~----~g~--dv~LiasGs~v~eAl~AAe~ 753 (896)
T PRK13012 700 T----VMNENYAQPALPEGAEE-----GI-LK-GM--YRLAAAA----EAP--RVQLLGSGAILREVLAAARL 753 (896)
T ss_pred E----ecCCCCCCCCCCccchh-----cc-cc-Cc--EEEeccC----CCC--CEEEEEecHHHHHHHHHHHH
Confidence 2 2222221111 122111 01 11 33 3333321 122 34999999998888776643
No 50
>KOG0523 consensus Transketolase [Carbohydrate transport and metabolism]
Probab=98.77 E-value=1.4e-07 Score=109.97 Aligned_cols=396 Identities=17% Similarity=0.185 Sum_probs=213.4
Q ss_pred CCCccccceeechhHHHHHhcCCCCCCceEEEEEecCcccCCCchHHHhhhccCCCCCccccEEEEEEeCCcccccCCCC
Q 002323 364 SHLEAVDPVVVGKTRAKQYYSHDVDRTKNMGVLIHGDGSFAGQGVVYETLHLSALPNYTTGGTIHIVVNNQVAFTTDPRA 443 (936)
Q Consensus 364 SHLeav~PVa~G~ArA~q~~~~d~~~~~~v~v~~hGDgA~sGQGvv~EtLNlA~LP~Y~~GGtIhIV~NNQigfTT~~~~ 443 (936)
-||+.....|+|+|.+.++...- ..=++|+.|||..+ +|.+||+|++|. .|..+-+|.|.-||+++++++...
T Consensus 118 G~lgQgis~a~GmA~~~k~~~k~----~~rv~~vlGDG~~~-eG~~~EA~s~Ag--~l~ldnLVai~D~n~is~~g~t~~ 190 (632)
T KOG0523|consen 118 GPLGQGISNAVGMAYAGKHLGKA----SNRVYCVLGDGCLT-EGSVWEAMSLAG--HLKLDNLVAIYDNNKISIDGATSL 190 (632)
T ss_pred CCccchHHHHHHHHHHHHhhccc----cceEEEEEcCchhc-cchHHHHHhhhh--hcccCCEEEEEccccccCCCCCcc
Confidence 56999999999999999998761 26789999999999 999999999982 233456888889999999988765
Q ss_pred CCCc-chh----h--------H-HHHHHHHHHHHHH-HccCCCEEEEEEeeecCCCCCCCCCCCCCHHHHHHHHcCCCHH
Q 002323 444 GRSS-QYC----T--------D-AVVHVCELAAEWR-QKFHSDVVVDLVCYRRFGHNEIDEPSFTQPKMYQVIRSHPSAF 508 (936)
Q Consensus 444 ~rss-~y~----t--------D-AV~~a~~~A~e~r-r~f~~pvlIdlv~YRr~GHne~Ddp~ytqp~~y~~i~~~~dpl 508 (936)
+... .|. . | --++++..|+.-+ ..-+||..|-+.|+-=.|---.- -..|...+++.
T Consensus 191 ~~~~dV~~~r~ea~g~~~~~V~~~d~d~i~ka~~~a~~~k~kpt~i~~~t~~g~G~~~ig---------~~~~Hg~pl~~ 261 (632)
T KOG0523|consen 191 GFDEDVYQLRFEAFGWNVIIVDGGDVDEIRKAIGKAKSVKGKPTAIKATTFIGRGSPYIG---------SESVHGAPLGE 261 (632)
T ss_pred cccccHHHHHHHHhCceEEEEcCcCHHHHHHHHhhhhhccCCceeeeeeeeeecCccccc---------cccccCCcchh
Confidence 5332 111 0 1 1133444444433 34578999999887655421110 12343333333
Q ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhhhcCCCccchhhhhccCCCCcccccccCCCCCChHHHHHHHHHh
Q 002323 509 EIYQKKLLESAQVTQEDINRIQEKVNTILNEEFMASKDYVPKRRDWLSAYWAGFKSPEQVSRIRNTGVKPEILKNVGKAI 588 (936)
Q Consensus 509 ~~y~~~Li~eGilt~eei~~i~~~~~~~l~~a~~~A~~~~p~~~~~~~~~w~~~~~~~~~~~~~~Tgv~~~~l~~i~~~~ 588 (936)
+..++-=-..|+ +...-.+-++. +.+|-.+.+ ......-.++.- .
T Consensus 262 ~~~~~~k~~~~~--P~~~~~v~~~~-----------~~~p~~~~~--------------~~~~~~~~i~~~--------~ 306 (632)
T KOG0523|consen 262 DDVERVKSIKGL--PVLIFVVPEKV-----------KLYPEKPVE--------------DARAISVRIPKI--------W 306 (632)
T ss_pred hHHHHHHhhcCC--cceeEEecccc-----------ccCCCcccc--------------cccccccCcCcc--------c
Confidence 221110000011 00000000000 011100000 000000000000 0
Q ss_pred ccCCCCCCchhHHHHHHHHHHHHHhcCCcccHHHHHHHHhhhhhhcCCcEEEecccCCCcccccccceeeecCCCceeec
Q 002323 589 TNLPENFKPHRGVKKVYEQRAQMIETGEGIDWAVGEALAFATLLVEGNHVRLSGQDVERGTFSHRHSVLHDQETGEKYCP 668 (936)
Q Consensus 589 ~~~P~~f~~h~~l~r~l~~R~~~~~~~~~iDWa~aE~LAfgsLl~eg~~Vrl~GqDv~rGtF~~RHavl~dq~t~~~y~p 668 (936)
-+-|+.|++-.+ -..-|. ++.|+|+ -|-....+|..---|..-+||+
T Consensus 307 ~~~~p~yk~~Dk---~~Atrk-----------~~~~aL~--~l~~~~~~vI~~~ad~~~st~t----------------- 353 (632)
T KOG0523|consen 307 EKSLPTYKVGDK---AVATRK-----------AFGEALA--ALAEADPRVIGGSADLKNSTLT----------------- 353 (632)
T ss_pred cccCCccccCCh---hhhHHH-----------HHHHHHH--HHhhcCcCeEEEecccCCCchh-----------------
Confidence 001112222111 011121 2334443 2333334444433444445543
Q ss_pred CCCCcccCCCcceEEEccCcchhHHHHHHhhhccCCC-CcceeeeccchhhhhhHHHHHHHHHhhhhhhhcCccccEEEc
Q 002323 669 LDHVMMNQDEEMFTVSNSSLSEFGVLGFELGYSMENP-NSLVLWEAQFGDFANGAQVIFDQFLSSGESKWLRQTGLVVLL 747 (936)
Q Consensus 669 L~~l~~~~~~g~~rV~nspLSE~avlG~e~G~sl~g~-~~LviwEaqFgDF~n~Aq~iidqfi~~~~~kw~~~s~lv~~l 747 (936)
.+. .+..+.|-+|--+.|...+|++.|.|..|+ .|.+. -|..|..-| +||..-..- .+.+++...
T Consensus 354 --d~~--~~~~p~R~i~~giaEq~mv~ia~G~a~~g~~~Pf~~---tf~~F~trA---~dqvr~~a~----s~~~v~~v~ 419 (632)
T KOG0523|consen 354 --DFF--PKRFPERFIECGIAEQNMVGIANGIACRGRTIPFCG---TFAAFFTRA---FDQVRMGAL----SQANVIYVA 419 (632)
T ss_pred --hhc--cccCccceEEEeeehhhhHHhhhchhcCCCccchhH---HHHHHHHHh---hhheeehhh----ccCCcEEEE
Confidence 333 333577999999999999999999999998 56433 444444444 565432221 256777777
Q ss_pred CccC--CC-CCccccCchhhhhhhcCCCCCCcccCCCchhhhhccccceEEEEcCCHHHHHHHHHHHHhcCCCCcEEEEc
Q 002323 748 PHGY--DG-QGPEHSSARLERFLQMSDDNPFVIPEMDPTLRKQIQECNWQIVNVTTPANYFHVLRRQIHRGFRKPLIVIS 824 (936)
Q Consensus 748 PhG~--~G-~GpeHSs~RiERfLQl~~~~~~~~~~~pg~~~~~~~~~N~~Vv~pstpa~~fhlLrrq~~r~~~~Pli~~~ 824 (936)
-|=. -| -||.|-- | ||-++|..+| ||.|.+|+.-...+++...++.. .+.|.|+-.
T Consensus 420 th~~i~~GeDGPth~~--i--------edlA~frsiP----------n~~v~~PaD~~et~~av~~Aa~~-~~~p~i~~~ 478 (632)
T KOG0523|consen 420 THDSIGLGEDGPTHQP--I--------EDLAMFRSIP----------NMIVFRPADGNETENAVATAANT-KGTPSIRTL 478 (632)
T ss_pred EeccccccCCCccccc--H--------HHHHHHHhCC----------CceEEecCchHHHHHHHHHHHhc-CCCeeEEEe
Confidence 6633 34 3888753 3 4446788899 69999999999999999999984 455888765
Q ss_pred cccccCCCCCCCCcccccccCCCCCCCCCCCceeEeecCCCCCCCCCCCccEEEEeCchhHHHHHHhh---cccCCcee
Q 002323 825 PKNLLRHKDCKSNLSEFDDVQGHPGFDKQGTRFKRLIKDQNGHSDLEEGIRRLVLCSGKVFITSLMKG---GRSAVQVM 900 (936)
Q Consensus 825 pK~Llr~~~~~S~l~ef~~~~~~~~~~~pg~~F~~vi~d~~~~~~~~~~v~rvilcsGkvyydL~~~r---~~~~~~~~ 900 (936)
+..-+=. ..-++.++-.. | +-|+-|.+ -+-+++-+|---|.-+++- +|.+++|-
T Consensus 479 ~r~~~~~-~~~~~~~~igk-----------g--~~vl~~~~--------~dV~LiG~Gs~v~~cl~AA~~L~~~gi~vr 535 (632)
T KOG0523|consen 479 SRQNLPI-YNNTEIEEIGK-----------G--KYVLQEVE--------PDVILIGTGSEVQECLEAAELLSEDGIKVR 535 (632)
T ss_pred cCccccc-cCCCchhhhcc-----------c--cEEEecCC--------CCEEEEeccHHHHHHHHHHHHHHhcCceEE
Confidence 5443211 01122222221 2 24555532 1237788897555544443 45666663
No 51
>cd02012 TPP_TK Thiamine pyrophosphate (TPP) family, Transketolase (TK) subfamily, TPP-binding module; TK catalyzes the transfer of a two-carbon unit from ketose phosphates to aldose phosphates. In heterotrophic organisms, TK provides a link between glycolysis and the pentose phosphate pathway and provides precursors for nucleotide, aromatic amino acid and vitamin biosynthesis. In addition, the enzyme plays a central role in the Calvin cycle in plants. Typically, TKs are homodimers. They require TPP and divalent cations, such as magnesium ions, for activity.
Probab=98.75 E-value=2.2e-08 Score=108.21 Aligned_cols=112 Identities=19% Similarity=0.204 Sum_probs=86.1
Q ss_pred ccCCCccccceeechhHHHHHhcCCCCCCceEEEEEecCcccCCCchHHHhhhcc---CCCCCccccEEEEEEeCCcccc
Q 002323 362 NPSHLEAVDPVVVGKTRAKQYYSHDVDRTKNMGVLIHGDGSFAGQGVVYETLHLS---ALPNYTTGGTIHIVVNNQVAFT 438 (936)
Q Consensus 362 NPSHLeav~PVa~G~ArA~q~~~~d~~~~~~v~v~~hGDgA~sGQGvv~EtLNlA---~LP~Y~~GGtIhIV~NNQigfT 438 (936)
...+||...|.++|+|+|.++...+ ..++|+.|||++. +|.++|+|+++ +|| -+|+||.||.|+++
T Consensus 103 ~~GslG~gl~~avG~Ala~~~~~~~-----~~v~~i~GDG~~~-~G~~~eal~~a~~~~l~-----~li~vvdnN~~~~~ 171 (255)
T cd02012 103 TTGSLGQGLSVAVGMALAEKLLGFD-----YRVYVLLGDGELQ-EGSVWEAASFAGHYKLD-----NLIAIVDSNRIQID 171 (255)
T ss_pred CCcchhhHHHHHHHHHHHHHHhCCC-----CEEEEEECccccc-ccHHHHHHHHHHHcCCC-----cEEEEEECCCcccc
Confidence 3477999999999999999987655 7899999999998 99999999999 775 27888888999988
Q ss_pred cCCCCCC-Ccchhh---------------H--HHHHHHHHHHHHHHccCCCEEEEEEeeecCCCCCC
Q 002323 439 TDPRAGR-SSQYCT---------------D--AVVHVCELAAEWRQKFHSDVVVDLVCYRRFGHNEI 487 (936)
Q Consensus 439 T~~~~~r-ss~y~t---------------D--AV~~a~~~A~e~rr~f~~pvlIdlv~YRr~GHne~ 487 (936)
++..... ...|.. | ++..|.+.|.+. .++|++|++.|.+-.||...
T Consensus 172 ~~~~~~~~~~~~~~~~~a~G~~~~~v~G~d~~~l~~al~~a~~~---~~~P~~I~~~t~kg~g~~~~ 235 (255)
T cd02012 172 GPTDDILFTEDLAKKFEAFGWNVIEVDGHDVEEILAALEEAKKS---KGKPTLIIAKTIKGKGVPFM 235 (255)
T ss_pred CcHhhccCchhHHHHHHHcCCeEEEECCCCHHHHHHHHHHHHHc---CCCCEEEEEEeecccccCcc
Confidence 7653221 112211 1 666666555532 17899999999999999843
No 52
>cd02011 TPP_PK Thiamine pyrophosphate (TPP) family, Phosphoketolase (PK) subfamily, TPP-binding module; PK catalyzes the conversion of D-xylulose 5-phosphate and phosphate to acetyl phosphate, D-glyceraldehyde-3-phosphate and H2O. This enzyme requires divalent magnesium ions and TPP for activity.
Probab=98.31 E-value=1.9e-06 Score=91.89 Aligned_cols=116 Identities=18% Similarity=0.178 Sum_probs=81.1
Q ss_pred CCCCcEEecCCCCchHHHHHhhcCCCHHHHHHhhcCCCCCCCCCCCccCCCCcccccccccCCCCCCCceeeeeeccccC
Q 002323 285 LGVESIVIGMPHRGRLNVLGNVVRKPLRQIFSEFSGGTKPVDEDGLYTGTGDVKYHLGTSYDRPTRGGKRIHLSLVANPS 364 (936)
Q Consensus 285 ~Gv~DivigM~HRgrlnvLa~vlg~p~~~ifaEf~G~~~~~~~G~~~ggsGDVkyHlG~s~~~~~~~g~~I~lsl~~NPS 364 (936)
.|..|.+++ .+|... ..++++|.+|. . + +| +.+|... .++ .+....+
T Consensus 16 ~G~~~~~~p-~~~~~~--------~gl~~lf~qfs-~---~------gg---~psH~~~----~tp-------Gi~~~~G 62 (227)
T cd02011 16 EGSYSEFYP-EISQDE--------EGMRKLFKQFS-F---P------GG---IPSHAAP----ETP-------GSIHEGG 62 (227)
T ss_pred cCCCccccc-cccccH--------HHHHHHHHhcC-C---C------CC---CCCCCcc----cCC-------Ceeeccc
Confidence 355576787 788654 12366888882 1 1 12 5578742 122 1344566
Q ss_pred CCccccceeechhHHHHHhcCCCCCCceEEEEEecCcccCCCchH---HHhhhccCCCCCccccEEEEEEeCCcccccCC
Q 002323 365 HLEAVDPVVVGKTRAKQYYSHDVDRTKNMGVLIHGDGSFAGQGVV---YETLHLSALPNYTTGGTIHIVVNNQVAFTTDP 441 (936)
Q Consensus 365 HLeav~PVa~G~ArA~q~~~~d~~~~~~v~v~~hGDgA~sGQGvv---~EtLNlA~LP~Y~~GGtIhIV~NNQigfTT~~ 441 (936)
.||...++|+|+++ ++. +.+++|++|||++. +|.+ +|+.++ +..++.|.++-|+.||+|.++++.
T Consensus 63 ~LG~gLs~A~G~a~----d~~-----d~iv~~vvGDGE~e-eG~lA~~W~a~~~--~~~~~~~~vLpIld~Ng~~i~~pt 130 (227)
T cd02011 63 ELGYSLSHAYGAVF----DNP-----DLIVACVVGDGEAE-TGPLATSWHSNKF--LNPATDGAVLPILHLNGYKISNPT 130 (227)
T ss_pred chhhHHHHHHHhhh----cCC-----CcEEEEEECcCHHH-HHhHHHHHHhhhh--hcccccCCeEEEEEcCCCcccCCc
Confidence 79999999999974 233 37999999999998 9997 665555 555677778888889999999998
Q ss_pred CCCC
Q 002323 442 RAGR 445 (936)
Q Consensus 442 ~~~r 445 (936)
..++
T Consensus 131 ~~~~ 134 (227)
T cd02011 131 ILAR 134 (227)
T ss_pred cccc
Confidence 7654
No 53
>COG0021 TktA Transketolase [Carbohydrate transport and metabolism]
Probab=98.23 E-value=0.0012 Score=78.87 Aligned_cols=113 Identities=16% Similarity=0.152 Sum_probs=82.6
Q ss_pred CCccccceeechhHHHHHhcCCC--CCC---ceEEEEEecCcccCCCchHHHhhhccCCCCCccccEEEEEEeCCccccc
Q 002323 365 HLEAVDPVVVGKTRAKQYYSHDV--DRT---KNMGVLIHGDGSFAGQGVVYETLHLSALPNYTTGGTIHIVVNNQVAFTT 439 (936)
Q Consensus 365 HLeav~PVa~G~ArA~q~~~~d~--~~~---~~v~v~~hGDgA~sGQGvv~EtLNlA~LP~Y~~GGtIhIV~NNQigfTT 439 (936)
+||...+-|+|+|.|.+.....- ++. ..-+.|+.|||-.. +|+.||+..+|.. |..|=.|.|.=+|.|.|-.
T Consensus 117 PLGQGianAVGmAlAe~~La~~fn~~g~~ivdh~tYvl~GDGclm-EGvs~EA~slAG~--l~L~kLIvlyD~N~IsiDG 193 (663)
T COG0021 117 PLGQGLANAVGMALAEKHLAALFNRPGFDIVDHYTYVLVGDGCLM-EGVSHEAASLAGH--LKLGKLIVLYDSNDISIDG 193 (663)
T ss_pred ccchhHHHHHHHHHHHHHHHhhhCCCCCccccceEEEEecCchHh-cccHHHHHHHHhh--cCCCcEEEEEeCCCceecc
Confidence 49999999999999998765431 111 35789999999999 9999999999921 2345688888999999988
Q ss_pred CCCCCCCc----chhh---------H-HHHHHHHHHHHHHHc-cCCCEEEEEEeee
Q 002323 440 DPRAGRSS----QYCT---------D-AVVHVCELAAEWRQK-FHSDVVVDLVCYR 480 (936)
Q Consensus 440 ~~~~~rss----~y~t---------D-AV~~a~~~A~e~rr~-f~~pvlIdlv~YR 480 (936)
+.+...+. +|-. | -=+++...|++.+++ ..||++|++.|-=
T Consensus 194 ~~~~~f~ed~~~RfeAyGW~vi~~~DG~D~e~I~~Ai~~Ak~~~dkPtlI~~kTiI 249 (663)
T COG0021 194 DTSLSFTEDVAKRFEAYGWNVIRVIDGHDLEAIDKAIEEAKASTDKPTLIIVKTII 249 (663)
T ss_pred CcccccchhHHHHHHhcCCeEEEecCCCCHHHHHHHHHHHHhcCCCCeEEEEEeee
Confidence 77655432 2211 1 224556666666676 6699999999854
No 54
>cd00568 TPP_enzymes Thiamine pyrophosphate (TPP) enzyme family, TPP-binding module; found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. These enzymes include, among others, the E1 components of the pyruvate, the acetoin and the branched chain alpha-keto acid dehydrogenase complexes.
Probab=98.16 E-value=1.5e-06 Score=86.75 Aligned_cols=99 Identities=20% Similarity=0.170 Sum_probs=70.4
Q ss_pred ccCCCccccceeechhHHHHHhcCCCCCCceEEEEEecCcccCCCchHHHhhhcc---CCCCCccccEEEEEEeCCcccc
Q 002323 362 NPSHLEAVDPVVVGKTRAKQYYSHDVDRTKNMGVLIHGDGSFAGQGVVYETLHLS---ALPNYTTGGTIHIVVNNQVAFT 438 (936)
Q Consensus 362 NPSHLeav~PVa~G~ArA~q~~~~d~~~~~~v~v~~hGDgA~sGQGvv~EtLNlA---~LP~Y~~GGtIhIV~NNQigfT 438 (936)
.-+.+|...|.++|++.|.+ + ..+|++.|||++. . ..+.|+.+ ++| +++||.||+....
T Consensus 44 ~~g~~G~~~~~a~Gaa~a~~----~-----~~vv~~~GDG~~~-~--~~~~l~ta~~~~~~------~~~iv~nN~~~~~ 105 (168)
T cd00568 44 GFGAMGYGLPAAIGAALAAP----D-----RPVVCIAGDGGFM-M--TGQELATAVRYGLP------VIVVVFNNGGYGT 105 (168)
T ss_pred CchhhhhhHHHHHHHHHhCC----C-----CcEEEEEcCcHHh-c--cHHHHHHHHHcCCC------cEEEEEECCccHH
Confidence 34669999999999999864 2 5689999999997 6 44777777 999 9999999998776
Q ss_pred cCCCCC------------CCcchhh-------H----HHHHHHHHHHHHHHccCCCEEEEEEe
Q 002323 439 TDPRAG------------RSSQYCT-------D----AVVHVCELAAEWRQKFHSDVVVDLVC 478 (936)
Q Consensus 439 T~~~~~------------rss~y~t-------D----AV~~a~~~A~e~rr~f~~pvlIdlv~ 478 (936)
+..... ....|.. + .-....+.|++.+++.++|+|||+.|
T Consensus 106 ~~~~~~~~~~~~~~~~~~~~~d~~~~a~~~G~~~~~v~~~~~l~~a~~~a~~~~~p~~i~v~~ 168 (168)
T cd00568 106 IRMHQEAFYGGRVSGTDLSNPDFAALAEAYGAKGVRVEDPEDLEAALAEALAAGGPALIEVKT 168 (168)
T ss_pred HHHHHHHHcCCCcccccCCCCCHHHHHHHCCCeEEEECCHHHHHHHHHHHHhCCCCEEEEEEC
Confidence 643200 0001110 0 11445666777777889999999975
No 55
>cd02002 TPP_BFDC Thiamine pyrophosphate (TPP) family, BFDC subfamily, TPP-binding module; composed of proteins similar to Pseudomonas putida benzoylformate decarboxylase (BFDC). P. putida BFDC plays a role in the mandelate pathway, catalyzing the conversion of benzoylformate to benzaldehyde and carbon dioxide. This enzyme is dependent on TPP and a divalent metal cation as cofactors.
Probab=97.99 E-value=6.4e-06 Score=83.80 Aligned_cols=59 Identities=29% Similarity=0.336 Sum_probs=47.2
Q ss_pred CCCccccceeechhHHHHHhcCCCCCCceEEEEEecCcccCCCchHHHhhhcc--CCCCCccccEEEEEEeCC-ccccc
Q 002323 364 SHLEAVDPVVVGKTRAKQYYSHDVDRTKNMGVLIHGDGSFAGQGVVYETLHLS--ALPNYTTGGTIHIVVNNQ-VAFTT 439 (936)
Q Consensus 364 SHLeav~PVa~G~ArA~q~~~~d~~~~~~v~v~~hGDgA~sGQGvv~EtLNlA--~LP~Y~~GGtIhIV~NNQ-igfTT 439 (936)
+.+|...|.++|++.|.+ + ..+|++.|||+|. .+. .|-...+ ++| +++||.||+ ||+++
T Consensus 49 g~mG~~lp~aiGaala~~----~-----~~vv~i~GDG~f~-~~~-~el~ta~~~~~p------~~~iV~nN~~~~~~~ 110 (178)
T cd02002 49 GGLGWGLPAAVGAALANP----D-----RKVVAIIGDGSFM-YTI-QALWTAARYGLP------VTVVILNNRGYGALR 110 (178)
T ss_pred ccccchHHHHHHHHhcCC----C-----CeEEEEEcCchhh-ccH-HHHHHHHHhCCC------eEEEEEcCccHHHHH
Confidence 568999999999999863 2 5789999999997 775 4433333 999 999999997 88765
No 56
>cd02014 TPP_POX Thiamine pyrophosphate (TPP) family, Pyruvate oxidase (POX) subfamily, TPP-binding module; composed of proteins similar to Lactobacillus plantarum POX, which plays a key role in controlling acetate production under aerobic conditions. POX decarboxylates pyruvate, producing hydrogen peroxide and the energy-storage metabolite acetylphosphate. It requires FAD in addition to TPP and a divalent cation as cofactors.
Probab=97.96 E-value=4e-06 Score=85.84 Aligned_cols=98 Identities=22% Similarity=0.246 Sum_probs=65.3
Q ss_pred CccccceeechhHHHHHhcCCCCCCceEEEEEecCcccCCCchHHHhhhcc--CCCCCccccEEEEEEeCC-cccccCCC
Q 002323 366 LEAVDPVVVGKTRAKQYYSHDVDRTKNMGVLIHGDGSFAGQGVVYETLHLS--ALPNYTTGGTIHIVVNNQ-VAFTTDPR 442 (936)
Q Consensus 366 Leav~PVa~G~ArA~q~~~~d~~~~~~v~v~~hGDgA~sGQGvv~EtLNlA--~LP~Y~~GGtIhIV~NNQ-igfTT~~~ 442 (936)
+|...|.++|++.|.. + ..+|++.|||+|. .+ ++|-.+++ ++| +++||.||+ ||+.+...
T Consensus 53 mG~~~~~aiGa~~a~~----~-----~~vv~i~GDG~f~-~~-~~el~t~~~~~lp------~~~iv~NN~~~~~~~~~~ 115 (178)
T cd02014 53 MGNGLPGAIAAKLAYP----D-----RQVIALSGDGGFA-ML-MGDLITAVKYNLP------VIVVVFNNSDLGFIKWEQ 115 (178)
T ss_pred hhhHHHHHHHHHHhCC----C-----CcEEEEEcchHHH-hh-HHHHHHHHHhCCC------cEEEEEECCchhHHHHHH
Confidence 7778888999888752 2 5788999999997 77 78866665 899 999999996 77643110
Q ss_pred -------CC---CCcchhhH-----------HHHHHHHHHHHHHHccCCCEEEEEEeee
Q 002323 443 -------AG---RSSQYCTD-----------AVVHVCELAAEWRQKFHSDVVVDLVCYR 480 (936)
Q Consensus 443 -------~~---rss~y~tD-----------AV~~a~~~A~e~rr~f~~pvlIdlv~YR 480 (936)
.. ....|+.- .-..-.+.|++.+.+.++|+|||+.+-+
T Consensus 116 ~~~~~~~~~~~~~~~d~~~la~a~G~~~~~v~~~~el~~~l~~a~~~~~p~liev~~~~ 174 (178)
T cd02014 116 EVMGQPEFGVDLPNPDFAKIAEAMGIKGIRVEDPDELEAALDEALAADGPVVIDVVTDP 174 (178)
T ss_pred HHhcCCceeccCCCCCHHHHHHHCCCeEEEeCCHHHHHHHHHHHHhCCCCEEEEEEeCC
Confidence 00 00112110 1122345566666667899999999843
No 57
>cd02004 TPP_BZL_OCoD_HPCL Thiamine pyrophosphate (TPP) family, BZL_OCoD_HPCL subfamily, TPP-binding module; composed of proteins similar to benzaldehyde lyase (BZL), oxalyl-CoA decarboxylase (OCoD) and 2-hydroxyphytanoyl-CoA lyase (2-HPCL). Pseudomonas fluorescens biovar I BZL cleaves the acyloin linkage of benzoin producing 2 molecules of benzaldehyde and enabling the Pseudomonas to grow on benzoin as the sole carbon and energy source. OCoD has a role in the detoxification of oxalate, catalyzing the decarboxylation of oxalyl-CoA to formate. 2-HPCL is a peroxisomal enzyme which plays a role in the alpha-oxidation of 3-methyl-branched fatty acids, catalyzing the cleavage of 2-hydroxy-3-methylacyl-CoA into formyl-CoA and a 2-methyl-branched fatty aldehyde. All these enzymes depend on Mg2+ and TPP for activity.
Probab=97.84 E-value=1.7e-05 Score=80.47 Aligned_cols=96 Identities=19% Similarity=0.180 Sum_probs=61.5
Q ss_pred CCccccceeechhHHHHHhcCCCCCCceEEEEEecCcccCCCchHHHhhhcc---CCCCCccccEEEEEEeCC-cccccC
Q 002323 365 HLEAVDPVVVGKTRAKQYYSHDVDRTKNMGVLIHGDGSFAGQGVVYETLHLS---ALPNYTTGGTIHIVVNNQ-VAFTTD 440 (936)
Q Consensus 365 HLeav~PVa~G~ArA~q~~~~d~~~~~~v~v~~hGDgA~sGQGvv~EtLNlA---~LP~Y~~GGtIhIV~NNQ-igfTT~ 440 (936)
.+|...|.|+|++.|.. + ..+|++.|||+|. .. .+.|..+ +|| +++||.||+ ||+...
T Consensus 49 ~mG~~lp~AiGa~la~~----~-----~~vv~i~GDG~f~-~~--~~el~ta~~~~lp------v~ivv~NN~~~~~~~~ 110 (172)
T cd02004 49 TLGVGLGYAIAAALARP----D-----KRVVLVEGDGAFG-FS--GMELETAVRYNLP------IVVVVGNNGGWYQGLD 110 (172)
T ss_pred cccchHHHHHHHHHhCC----C-----CeEEEEEcchhhc-CC--HHHHHHHHHcCCC------EEEEEEECcccccchh
Confidence 37888888888888753 2 4689999999996 43 2445444 999 999999984 887653
Q ss_pred CCCCC------------Ccchhh-------H----HHHHHHHHHHHHHHccCCCEEEEEEe
Q 002323 441 PRAGR------------SSQYCT-------D----AVVHVCELAAEWRQKFHSDVVVDLVC 478 (936)
Q Consensus 441 ~~~~r------------ss~y~t-------D----AV~~a~~~A~e~rr~f~~pvlIdlv~ 478 (936)
..+.. ...|.. + .-.+..+.|++.+++.++|+|||+++
T Consensus 111 ~~~~~~~~~~~~~~~~~~~d~~~la~a~G~~~~~v~~~~el~~al~~a~~~~~p~liev~i 171 (172)
T cd02004 111 GQQLSYGLGLPVTTLLPDTRYDLVAEAFGGKGELVTTPEELKPALKRALASGKPALINVII 171 (172)
T ss_pred hhhhhccCCCceeccCCCCCHHHHHHHCCCeEEEECCHHHHHHHHHHHHHcCCCEEEEEEc
Confidence 22110 011110 0 11233455555555668999999975
No 58
>COG3958 Transketolase, C-terminal subunit [Carbohydrate transport and metabolism]
Probab=97.74 E-value=0.00039 Score=76.21 Aligned_cols=199 Identities=17% Similarity=0.258 Sum_probs=133.5
Q ss_pred HHHHHHHhhhhhhcCCcEEEecccCCCcccccccceeeecCCCceeecCCCCcccCCCcceEEEccCcchhHHHHHHhhh
Q 002323 621 AVGEALAFATLLVEGNHVRLSGQDVERGTFSHRHSVLHDQETGEKYCPLDHVMMNQDEEMFTVSNSSLSEFGVLGFELGY 700 (936)
Q Consensus 621 a~aE~LAfgsLl~eg~~Vrl~GqDv~rGtF~~RHavl~dq~t~~~y~pL~~l~~~~~~g~~rV~nspLSE~avlG~e~G~ 700 (936)
+++|.|+ .|-..+.+|.+.=-|+..-| -+..+. +..|.|++|--|+|+..+|.+.|.
T Consensus 12 ~~g~~L~--~l~~~~~diVvl~ADl~~St------------------~~~~f~---~~fPdR~~NvGIaEQ~mvg~AAGL 68 (312)
T COG3958 12 VYGETLA--ELGRKNSDIVVLDADLSSST------------------KTGYFA---KEFPDRFFNVGIAEQDMVGTAAGL 68 (312)
T ss_pred HHHHHHH--HHHhcCCCEEEEeccccccc------------------chhHHH---HhCchhheecchHHHHHHHHHHHH
Confidence 3455554 56677888888877765311 113333 345899999999999999999999
Q ss_pred ccCCCCcceeeeccchhhhh-hHHHHHHHHHhhhhhhhcCccccEEEcCccC--CC-CCccccCchhhhhhhcCCCCCCc
Q 002323 701 SMENPNSLVLWEAQFGDFAN-GAQVIFDQFLSSGESKWLRQTGLVVLLPHGY--DG-QGPEHSSARLERFLQMSDDNPFV 776 (936)
Q Consensus 701 sl~g~~~LviwEaqFgDF~n-~Aq~iidqfi~~~~~kw~~~s~lv~~lPhG~--~G-~GpeHSs~RiERfLQl~~~~~~~ 776 (936)
|+.|.+|.+ .-|+-|+. -| +||+-++-.+ ...++.+..-|+. .| -||.|.+. ||-++
T Consensus 69 A~~Gk~Pfv---~tfa~F~s~Ra---~EQir~~iay---~~lnVKiv~t~~G~t~g~dG~sHq~~----------EDiai 129 (312)
T COG3958 69 ALAGKKPFV---STFAAFLSRRA---WEQIRNSIAY---NNLNVKIVATHAGVTYGEDGSSHQAL----------EDIAI 129 (312)
T ss_pred HhcCCCcee---echHHHHHHHH---HHHHHHHhhh---ccCCeEEEEecCCcccCCCCccchhH----------HHHHH
Confidence 999999944 47888887 66 4554433322 1467777666654 45 68888743 55667
Q ss_pred ccCCCchhhhhccccceEEEEcCCHHHHHHHHHHHHhcCCCCcEEEEccccccCCCCCCCCcccccccCCCCCCCCCCCc
Q 002323 777 IPEMDPTLRKQIQECNWQIVNVTTPANYFHVLRRQIHRGFRKPLIVISPKNLLRHKDCKSNLSEFDDVQGHPGFDKQGTR 856 (936)
Q Consensus 777 ~~~~pg~~~~~~~~~N~~Vv~pstpa~~fhlLrrq~~r~~~~Pli~~~pK~Llr~~~~~S~l~ef~~~~~~~~~~~pg~~ 856 (936)
+-.+| ||.|+.|+.+-+...+++.... .+.|+-+ .|.|.+..+.--++ +-.
T Consensus 130 mR~lp----------n~~V~~P~D~v~~~~i~~~~~~--~~GP~Y~----Rl~R~~~p~~~~~~-------------~~~ 180 (312)
T COG3958 130 MRGLP----------NMTVIAPADAVETRAILDQIAD--YKGPVYM----RLGRGKVPVVVDEG-------------GYT 180 (312)
T ss_pred HhcCC----------CceEEccCcHHHHHHHHHHHHh--cCCCEEE----EecCCCCCceecCC-------------Cce
Confidence 77888 7999999999999999988777 8999886 56664444322222 122
Q ss_pred eeE----eecCCCCCCCCCCCccEEEEeCchhHHHHHHhh---cccCCce
Q 002323 857 FKR----LIKDQNGHSDLEEGIRRLVLCSGKVFITSLMKG---GRSAVQV 899 (936)
Q Consensus 857 F~~----vi~d~~~~~~~~~~v~rvilcsGkvyydL~~~r---~~~~~~~ 899 (936)
|+. |+-|. ++ -+|+.||-+-...+++- +++++++
T Consensus 181 F~iGka~vLrdG-------~D--~tiiA~G~mv~~al~AA~~L~~~GIsa 221 (312)
T COG3958 181 FEIGKANVLRDG-------SD--LTIIATGVMVAEALEAAEILKKEGISA 221 (312)
T ss_pred EeccceeEeecC-------Cc--eEEEecCcchHHHHHHHHHHHhcCCCE
Confidence 332 33332 22 48999998777666554 3455554
No 59
>PF00456 Transketolase_N: Transketolase, thiamine diphosphate binding domain; InterPro: IPR005474 Transketolase 2.2.1.1 from EC (TK) catalyzes the reversible transfer of a two-carbon ketol unit from xylulose 5-phosphate to an aldose receptor, such as ribose 5-phosphate, to form sedoheptulose 7-phosphate and glyceraldehyde 3- phosphate. This enzyme, together with transaldolase, provides a link between the glycolytic and pentose-phosphate pathways. TK requires thiamine pyrophosphate as a cofactor. In most sources where TK has been purified, it is a homodimer of approximately 70 Kd subunits. TK sequences from a variety of eukaryotic and prokaryotic sources [, ] show that the enzyme has been evolutionarily conserved. In the peroxisomes of methylotrophic yeast Pichia angusta (Yeast) (Hansenula polymorpha), there is a highly related enzyme, dihydroxy-acetone synthase (DHAS) 2.2.1.3 from EC (also known as formaldehyde transketolase), which exhibits a very unusual specificity by including formaldehyde amongst its substrates. 1-deoxyxylulose-5-phosphate synthase (DXP synthase) [] is an enzyme so far found in bacteria (gene dxs) and plants (gene CLA1) which catalyzes the thiamine pyrophosphoate-dependent acyloin condensation reaction between carbon atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D- xylulose-5-phosphate (dxp), a precursor in the biosynthetic pathway to isoprenoids, thiamine (vitamin B1), and pyridoxol (vitamin B6). DXP synthase is evolutionary related to TK. The N-terminal section, contains a histidine residue which appears to function in proton transfer during catalysis []. In the central section there are conserved acidic residues that are part of the active cleft and may participate in substrate-binding []. This family includes transketolase enzymes 2.2.1.1 from EC and also partially matches to 2-oxoisovalerate dehydrogenase beta subunit P37941 from SWISSPROT 1.2.4.4 from EC. Both these enzymes utilise thiamine pyrophosphate as a cofactor, suggesting there may be common aspects in their mechanism of catalysis.; PDB: 3M49_B 1NGS_B 1TKA_A 1TRK_B 1TKB_A 1GPU_B 1AY0_B 1TKC_B 3HYL_A 3RIM_A ....
Probab=97.72 E-value=5.3e-05 Score=85.41 Aligned_cols=111 Identities=21% Similarity=0.209 Sum_probs=77.5
Q ss_pred CCccccceeechhHHHHHhcC-----CCCCCceEEEEEecCcccCCCchHHHhhhcc---CCCCCccccEEEEEEeCCcc
Q 002323 365 HLEAVDPVVVGKTRAKQYYSH-----DVDRTKNMGVLIHGDGSFAGQGVVYETLHLS---ALPNYTTGGTIHIVVNNQVA 436 (936)
Q Consensus 365 HLeav~PVa~G~ArA~q~~~~-----d~~~~~~v~v~~hGDgA~sGQGvv~EtLNlA---~LP~Y~~GGtIhIV~NNQig 436 (936)
.||...++|+|+|+|.|.... +.+..+.-++|+.|||-.. +|+++|++.+| +|. -+|.||-+|++.
T Consensus 112 sLGqGl~~avG~Ala~k~~~~~~n~~~~~~~~~~vy~l~GDGel~-EG~~~EA~~~A~~~~L~-----nLi~i~D~N~~q 185 (332)
T PF00456_consen 112 SLGQGLSIAVGMALAEKMLGARFNKPGFDIIDHRVYVLMGDGELQ-EGSVWEAASLAGHYKLD-----NLIVIYDSNGIQ 185 (332)
T ss_dssp STTHHHHHHHHHHHHHHHHHHHHHBTTBSTTT--EEEEEEHHHHH-SHHHHHHHHHHHHTT-T-----TEEEEEEEESEE
T ss_pred chhcchhhHHHHHHHHHHHHhhhcccccccccceEEEEecCcccc-chhhHHHHHHHHHhCCC-----CEEEEEecCCcc
Confidence 399999999999999987532 2223357899999999999 99999999999 665 588889999998
Q ss_pred cccCCCCCCCcc----hhh---------H-----HHHHHHHHHHHHHHcc-CCCEEEEEEeeecCCCC
Q 002323 437 FTTDPRAGRSSQ----YCT---------D-----AVVHVCELAAEWRQKF-HSDVVVDLVCYRRFGHN 485 (936)
Q Consensus 437 fTT~~~~~rss~----y~t---------D-----AV~~a~~~A~e~rr~f-~~pvlIdlv~YRr~GHn 485 (936)
+..+.+..-... |.+ | +++.|...| ++. ++|++|.+.|-.=.|-.
T Consensus 186 ~dg~~~~~~~~~~~~k~~a~Gw~v~~v~dGhd~~~i~~A~~~a----~~~~~kP~~Ii~~TvkG~G~~ 249 (332)
T PF00456_consen 186 IDGPTDIVFSEDIAKKFEAFGWNVIEVCDGHDVEAIYAAIEEA----KASKGKPTVIIARTVKGKGVP 249 (332)
T ss_dssp TTEEGGGTHHSHHHHHHHHTT-EEEEEEETTBHHHHHHHHHHH----HHSTSS-EEEEEEE-TTTTST
T ss_pred cCCCcccccchHHHHHHHHhhhhhcccccCcHHHHHHHHHHHH----HhcCCCCceeecceEEecCch
Confidence 887664321111 110 1 555555554 443 89999999998767763
No 60
>PF13292 DXP_synthase_N: 1-deoxy-D-xylulose-5-phosphate synthase; PDB: 2O1X_C 2O1S_B.
Probab=97.62 E-value=9e-05 Score=80.50 Aligned_cols=68 Identities=21% Similarity=0.350 Sum_probs=53.5
Q ss_pred ccCCCccccceeechhHHHHHhcCCCCCCceEEEEEecCcccCCCchHHHhhhcc---CCCCCccccEEEEEEeCCcccc
Q 002323 362 NPSHLEAVDPVVVGKTRAKQYYSHDVDRTKNMGVLIHGDGSFAGQGVVYETLHLS---ALPNYTTGGTIHIVVNNQVAFT 438 (936)
Q Consensus 362 NPSHLeav~PVa~G~ArA~q~~~~d~~~~~~v~v~~hGDgA~sGQGvv~EtLNlA---~LP~Y~~GGtIhIV~NNQigfT 438 (936)
...|-++....|+|.|.|+.+.+.+ .-+|+++||||++ -|..+|+||-+ +-+ +|.|..+|+-.|+
T Consensus 109 ~~GHsstsiSaa~Gma~ar~l~~~~-----~~vVaVIGDGalt-~Gma~EALN~~g~~~~~------liVILNDN~mSIs 176 (270)
T PF13292_consen 109 GAGHSSTSISAALGMAVARDLKGED-----RKVVAVIGDGALT-GGMAFEALNNAGHLKSN------LIVILNDNEMSIS 176 (270)
T ss_dssp --SSSS-HHHHHHHHHHHHHHHTS--------EEEEEETTGGG-SHHHHHHHHHHHHHT-S------EEEEEEE-SBSSS
T ss_pred cCCccHhHHHHHHHHHHHHHhcCCC-----CcEEEEECCcchh-HHHHHHHHHHHHhcCCC------EEEEEeCCCcccC
Confidence 3467888889999999999998876 7789999999999 99999999999 778 9999999999888
Q ss_pred cCC
Q 002323 439 TDP 441 (936)
Q Consensus 439 T~~ 441 (936)
-+.
T Consensus 177 ~nv 179 (270)
T PF13292_consen 177 PNV 179 (270)
T ss_dssp B--
T ss_pred CCc
Confidence 543
No 61
>TIGR00759 aceE pyruvate dehydrogenase E1 component, homodimeric type. WARNING: This family is classified as subfamily rather than equivalog because it includes a counterexample from Pseudomonas putida, MdeB, that is active as an E1 component of an alpha-ketoglutarate dehydrogenase complex rather than a pyruvate dehydrogase complex. The second pyruvate dehydrogenase complex E1 protein from Alcaligenes eutrophus, PdhE, complements an aceE mutant of E. coli but is not part of a pyruvate dehydrogenase complex operon, is more similar to the Pseudomonas putida MdeB than to E. coli AceE, and may have also have a different primary specificity.
Probab=97.45 E-value=0.061 Score=67.25 Aligned_cols=71 Identities=13% Similarity=0.119 Sum_probs=57.0
Q ss_pred CccccceeechhHHHHHhcCC--CCCCceEEEEEecCcccCCCchHHHhhhcc---CCCCCccccEEEEEEeCCcccccC
Q 002323 366 LEAVDPVVVGKTRAKQYYSHD--VDRTKNMGVLIHGDGSFAGQGVVYETLHLS---ALPNYTTGGTIHIVVNNQVAFTTD 440 (936)
Q Consensus 366 Leav~PVa~G~ArA~q~~~~d--~~~~~~v~v~~hGDgA~sGQGvv~EtLNlA---~LP~Y~~GGtIhIV~NNQigfTT~ 440 (936)
||-..++++|.|+|.++.... .+..+.=+.|+.|||-.. +|.++|++.+| +|. -+|+||-+|.+.+..+
T Consensus 191 LG~Gls~AvG~Ala~Kyl~~rg~~~~~~~rVyvllGDGEld-EG~swEA~~~Aa~~kLd-----NLi~IVD~N~~qlDG~ 264 (885)
T TIGR00759 191 MGLGPINAIYQARFMKYLENRGLKDTGDQKVWAFLGDGEMD-EPESKGAITFAAREKLD-----NLTFVINCNLQRLDGP 264 (885)
T ss_pred ccHHHHHHHHHHHHHHHHHhhccCCCCCceEEEEEcchhhc-cHHHHHHHHHHHHhCCC-----CEEEEEeCCCCccCCc
Confidence 999999999999999972211 122335688999999999 99999999999 675 5889999999877776
Q ss_pred CC
Q 002323 441 PR 442 (936)
Q Consensus 441 ~~ 442 (936)
.+
T Consensus 265 v~ 266 (885)
T TIGR00759 265 VR 266 (885)
T ss_pred cc
Confidence 55
No 62
>PRK12270 kgd alpha-ketoglutarate decarboxylase; Reviewed
Probab=97.44 E-value=8.7e-05 Score=91.32 Aligned_cols=98 Identities=19% Similarity=0.231 Sum_probs=60.4
Q ss_pred ccchhhhhhHHHHHHHHHhhhhhhhcCccccEEEcCc----cCCCCCccccCchhhhhhhcCCCCCCcccCCCchhhhhc
Q 002323 713 AQFGDFANGAQVIFDQFLSSGESKWLRQTGLVVLLPH----GYDGQGPEHSSARLERFLQMSDDNPFVIPEMDPTLRKQI 788 (936)
Q Consensus 713 aqFgDF~n~Aq~iidqfi~~~~~kw~~~s~lv~~lPh----G~~G~GpeHSs~RiERfLQl~~~~~~~~~~~pg~~~~~~ 788 (936)
+--||=++..|-++-.-++ ...-|++..|-||.+-. |+ +-.|+||-+ -+|.- + -.-.-.+|+
T Consensus 652 ~~hGdaafagQGvV~Etln-la~l~~y~tGGtIhvivNNqiGf-tT~p~~~Rs--s~y~t---d-~ak~~~~Pi------ 717 (1228)
T PRK12270 652 LLHGDAAFAGQGVVAETLN-LSQLRGYRTGGTIHIVVNNQVGF-TTAPESSRS--SEYAT---D-VAKMIQAPI------ 717 (1228)
T ss_pred EEeccccccCCchHHHHHH-HHhccCCCCCCeEEEEEecCccc-ccCcccccc--chhhH---H-HHhhcCCCE------
Confidence 4568877666766665554 44689998887776653 44 445887644 11111 1 011223554
Q ss_pred cccceEEEEcCCHHHHHHHHHHHHh--cCCCCcEEEEccccccCC
Q 002323 789 QECNWQIVNVTTPANYFHVLRRQIH--RGFRKPLIVISPKNLLRH 831 (936)
Q Consensus 789 ~~~N~~Vv~pstpa~~fhlLrrq~~--r~~~~Pli~~~pK~Llr~ 831 (936)
+.| |=-.|.......|-++. +.|+||+||=- ..||.
T Consensus 718 ----fhV-NGdDpeAv~~va~lA~~yr~~f~~dVvIdl--vcYRr 755 (1228)
T PRK12270 718 ----FHV-NGDDPEAVVRVARLAFEYRQRFHKDVVIDL--VCYRR 755 (1228)
T ss_pred ----EeE-CCCCHHHHHHHHHHHHHHHHHcCCCeEEEE--EEEee
Confidence 444 78899998888887774 77899998732 34553
No 63
>PRK07524 hypothetical protein; Provisional
Probab=97.43 E-value=0.00017 Score=85.83 Aligned_cols=102 Identities=16% Similarity=0.100 Sum_probs=67.1
Q ss_pred CCccccceeechhHHHHHhcCCCCCCceEEEEEecCcccCCCchHHHhhhcc--CCCCCccccEEEEEEeC-Cccccc--
Q 002323 365 HLEAVDPVVVGKTRAKQYYSHDVDRTKNMGVLIHGDGSFAGQGVVYETLHLS--ALPNYTTGGTIHIVVNN-QVAFTT-- 439 (936)
Q Consensus 365 HLeav~PVa~G~ArA~q~~~~d~~~~~~v~v~~hGDgA~sGQGvv~EtLNlA--~LP~Y~~GGtIhIV~NN-QigfTT-- 439 (936)
.+|...|.++|++.|. .+ .-+|++.|||+|. -.+.|-...+ +|| +++||.|| .||+..
T Consensus 408 ~mG~~lp~aiGa~lA~----p~-----~~vv~i~GDG~f~--~~~~el~ta~~~~lp------i~~vV~NN~~~g~i~~~ 470 (535)
T PRK07524 408 TLGYGLPAAIGAALGA----PE-----RPVVCLVGDGGLQ--FTLPELASAVEADLP------LIVLLWNNDGYGEIRRY 470 (535)
T ss_pred cccchHHHHHHHHHhC----CC-----CcEEEEEcchHHh--hhHHHHHHHHHhCCC------eEEEEEECCchHHHHHH
Confidence 3777888899999884 22 5799999999994 4466633333 999 99999999 777542
Q ss_pred -------CCC-CCCCcchhh--H---------HHHHHHHHHHHHHHccCCCEEEEEEeeecCC
Q 002323 440 -------DPR-AGRSSQYCT--D---------AVVHVCELAAEWRQKFHSDVVVDLVCYRRFG 483 (936)
Q Consensus 440 -------~~~-~~rss~y~t--D---------AV~~a~~~A~e~rr~f~~pvlIdlv~YRr~G 483 (936)
+.. +.....|+. . .-..-.+.|++.+.+.++|+|||+.++|+.|
T Consensus 471 ~~~~~~~~~~~~~~~~d~~~~A~a~G~~~~~v~~~~el~~al~~a~~~~~p~liev~~~~~~~ 533 (535)
T PRK07524 471 MVARDIEPVGVDPYTPDFIALARAFGCAAERVADLEQLQAALRAAFARPGPTLIEVDQACWFA 533 (535)
T ss_pred HHHhcCCccccCCCCCCHHHHHHHCCCcEEEeCCHHHHHHHHHHHHhCCCCEEEEEECCcccc
Confidence 100 000111211 0 1123345566666678999999999999886
No 64
>cd03372 TPP_ComE Thiamine pyrophosphate (TPP) family, ComE subfamily, TPP-binding module; composed of proteins similar to Methanococcus jannaschii sulfopyruvate decarboxylase beta subunit (ComE). M. jannaschii sulfopyruvate decarboxylase (ComDE) is a dodecamer of six alpha (D) subunits and six (E) beta subunits, which catalyzes the decarboxylation of sulfopyruvic acid to sulfoacetaldehyde in the coenzyme M pathway. ComDE requires TPP and divalent metal cation cofactors.
Probab=97.43 E-value=0.00033 Score=72.27 Aligned_cols=98 Identities=14% Similarity=0.128 Sum_probs=65.8
Q ss_pred CCCccccceeechhHHHHHhcCCCCCCceEEEEEecCccc--CCCchHHHhhhccCCCCCccccEEEE-EEeCCcccccC
Q 002323 364 SHLEAVDPVVVGKTRAKQYYSHDVDRTKNMGVLIHGDGSF--AGQGVVYETLHLSALPNYTTGGTIHI-VVNNQVAFTTD 440 (936)
Q Consensus 364 SHLeav~PVa~G~ArA~q~~~~d~~~~~~v~v~~hGDgA~--sGQGvv~EtLNlA~LP~Y~~GGtIhI-V~NNQigfTT~ 440 (936)
..+|...|.|+|++.|.. .-+|++.|||+| + .+.++++.++..+| +++| +.||.||++..
T Consensus 42 g~mG~~lp~AiGaala~~----------~~vv~i~GDG~f~m~-~~el~ta~~~~~~~------l~vvV~NN~~~~~~~~ 104 (179)
T cd03372 42 GSMGLASSIGLGLALAQP----------RKVIVIDGDGSLLMN-LGALATIAAEKPKN------LIIVVLDNGAYGSTGN 104 (179)
T ss_pred cchhhHHHHHHHHHhcCC----------CcEEEEECCcHHHhC-HHHHHHHHHcCCCC------EEEEEEcCccccccCC
Confidence 448889999999999853 257999999999 6 77888887776566 5555 55666787642
Q ss_pred CCCCCC--cchhh--H---------H-HHHHHHHHHHHHHccCCCEEEEEEeee
Q 002323 441 PRAGRS--SQYCT--D---------A-VVHVCELAAEWRQKFHSDVVVDLVCYR 480 (936)
Q Consensus 441 ~~~~rs--s~y~t--D---------A-V~~a~~~A~e~rr~f~~pvlIdlv~YR 480 (936)
...... ..|.. . . ..+..+.|++.++ ++|+|||+.+-+
T Consensus 105 ~~~~~~~~~d~~~lA~a~G~~~~~v~~~~~el~~al~~a~--~gp~lIev~~~~ 156 (179)
T cd03372 105 QPTHAGKKTDLEAVAKACGLDNVATVASEEAFEKAVEQAL--DGPSFIHVKIKP 156 (179)
T ss_pred CCCCCCCCCCHHHHHHHcCCCeEEecCCHHHHHHHHHHhc--CCCEEEEEEEcC
Confidence 211111 11111 0 2 4556667777666 789999999944
No 65
>cd02017 TPP_E1_EcPDC_like Thiamine pyrophosphate (TPP) family, E1 of E. coli PDC-like subfamily, TPP-binding module; composed of proteins similar to the E1 component of the Escherichia coli pyruvate dehydrogenase multienzyme complex (PDC). PDC catalyzes the oxidative decarboxylation of pyruvate and the subsequent acetylation of coenzyme A to acetyl-CoA. The E1 component of PDC catalyzes the first step of the multistep process, using TPP and a divalent cation as cofactors. E. coli PDC is a homodimeric enzyme.
Probab=97.39 E-value=0.00047 Score=78.88 Aligned_cols=75 Identities=16% Similarity=0.149 Sum_probs=58.4
Q ss_pred cCCCccccceeechhHHHHHhcC--CCCCCceEEEEEecCcccCCCchHHHhhhcc---CCCCCccccEEEEEEeCCccc
Q 002323 363 PSHLEAVDPVVVGKTRAKQYYSH--DVDRTKNMGVLIHGDGSFAGQGVVYETLHLS---ALPNYTTGGTIHIVVNNQVAF 437 (936)
Q Consensus 363 PSHLeav~PVa~G~ArA~q~~~~--d~~~~~~v~v~~hGDgA~sGQGvv~EtLNlA---~LP~Y~~GGtIhIV~NNQigf 437 (936)
+-.||-..++++|.|+|.++... ...+.+.-++|+.|||.+. +|++||++++| +|. -+|.||-+|++.+
T Consensus 117 TGSLGqGLs~AvGmAla~r~l~a~~~~~~~~~rvyvllGDGEl~-EG~vwEA~~~Ag~~kL~-----NLivIvD~N~~qi 190 (386)
T cd02017 117 TVSMGLGPIQAIYQARFNRYLEDRGLKDTSDQKVWAFLGDGEMD-EPESLGAIGLAAREKLD-----NLIFVVNCNLQRL 190 (386)
T ss_pred CchHHHHHHHHHHHHHHHHHHHhhhccCCCCCeEEEEEcccccc-cHHHHHHHHHHHHhCCC-----CEEEEEECCCCcc
Confidence 34499999999999999997321 0111235688999999999 99999999999 663 3888999999887
Q ss_pred ccCCCC
Q 002323 438 TTDPRA 443 (936)
Q Consensus 438 TT~~~~ 443 (936)
..+..+
T Consensus 191 dG~t~~ 196 (386)
T cd02017 191 DGPVRG 196 (386)
T ss_pred CCcccc
Confidence 776654
No 66
>cd02015 TPP_AHAS Thiamine pyrophosphate (TPP) family, Acetohydroxyacid synthase (AHAS) subfamily, TPP-binding module; composed of proteins similar to the large catalytic subunit of AHAS. AHAS catalyzes the condensation of two molecules of pyruvate to give the acetohydroxyacid, 2-acetolactate. 2-Acetolactate is the precursor of the branched chain amino acids, valine and leucine. AHAS also catalyzes the condensation of pyruvate and 2-ketobutyrate to form 2-aceto-2-hydroxybutyrate in isoleucine biosynthesis. In addition to requiring TPP and a divalent metal ion as cofactors, AHAS requires FAD.
Probab=97.25 E-value=0.00048 Score=71.04 Aligned_cols=100 Identities=19% Similarity=0.231 Sum_probs=63.1
Q ss_pred CCCccccceeechhHHHHHhcCCCCCCceEEEEEecCcccCCCchHHHhhhcc--CCCCCccccEEEEEEeCCc-ccccC
Q 002323 364 SHLEAVDPVVVGKTRAKQYYSHDVDRTKNMGVLIHGDGSFAGQGVVYETLHLS--ALPNYTTGGTIHIVVNNQV-AFTTD 440 (936)
Q Consensus 364 SHLeav~PVa~G~ArA~q~~~~d~~~~~~v~v~~hGDgA~sGQGvv~EtLNlA--~LP~Y~~GGtIhIV~NNQi-gfTT~ 440 (936)
+.+|...|.++|++.|.+ + ..+|++.|||+|. -.+.|=...+ +|| +++||.||+. |+...
T Consensus 50 g~mG~~lp~aiGa~la~~----~-----~~vv~i~GDG~f~--~~~~eL~ta~~~~lp------i~ivV~nN~~~~~~~~ 112 (186)
T cd02015 50 GTMGFGLPAAIGAKVARP----D-----KTVICIDGDGSFQ--MNIQELATAAQYNLP------VKIVILNNGSLGMVRQ 112 (186)
T ss_pred cchhchHHHHHHHHHhCC----C-----CeEEEEEcccHHh--ccHHHHHHHHHhCCC------eEEEEEECCccHHHHH
Confidence 347888899999988853 1 4578999999995 3456632333 999 9999999985 32110
Q ss_pred ------CCCC------CCcchhh-------H----HHHHHHHHHHHHHHccCCCEEEEEEeee
Q 002323 441 ------PRAG------RSSQYCT-------D----AVVHVCELAAEWRQKFHSDVVVDLVCYR 480 (936)
Q Consensus 441 ------~~~~------rss~y~t-------D----AV~~a~~~A~e~rr~f~~pvlIdlv~YR 480 (936)
.... ....|.. . .-....+.|++.+.+.++|+|||+.+-+
T Consensus 113 ~~~~~~~~~~~~~~~~~~~d~~~~a~a~G~~~~~v~~~~el~~al~~a~~~~~p~liev~~~~ 175 (186)
T cd02015 113 WQELFYEGRYSHTTLDSNPDFVKLAEAYGIKGLRVEKPEELEAALKEALASDGPVLLDVLVDP 175 (186)
T ss_pred HHHHHcCCceeeccCCCCCCHHHHHHHCCCceEEeCCHHHHHHHHHHHHhCCCCEEEEEEeCC
Confidence 0000 0011110 0 1234456666666678999999999954
No 67
>PRK06725 acetolactate synthase 3 catalytic subunit; Validated
Probab=97.21 E-value=0.00034 Score=84.19 Aligned_cols=98 Identities=20% Similarity=0.296 Sum_probs=65.8
Q ss_pred CCCccccceeechhHHHHHhcCCCCCCceEEEEEecCcccCCCchHHHhhhcc--CCCCCccccEEEEEEeCC-cccccC
Q 002323 364 SHLEAVDPVVVGKTRAKQYYSHDVDRTKNMGVLIHGDGSFAGQGVVYETLHLS--ALPNYTTGGTIHIVVNNQ-VAFTTD 440 (936)
Q Consensus 364 SHLeav~PVa~G~ArA~q~~~~d~~~~~~v~v~~hGDgA~sGQGvv~EtLNlA--~LP~Y~~GGtIhIV~NNQ-igfTT~ 440 (936)
+.+|...|-++|++.|.. + .-+|++.|||+| +..++|-.++. +|| +|+||.||+ ||+...
T Consensus 422 gsmG~~lp~aiGa~lA~p----~-----~~vv~i~GDG~f--~~~~~el~Ta~~~~lp------i~~vV~NN~~~~~~~~ 484 (570)
T PRK06725 422 GTMGFGFPAAIGAQLAKE----E-----ELVICIAGDASF--QMNIQELQTIAENNIP------VKVFIINNKFLGMVRQ 484 (570)
T ss_pred ccccchhhHHHhhHhhcC----C-----CeEEEEEecchh--hccHHHHHHHHHhCCC------eEEEEEECCccHHHHH
Confidence 558899999999998842 2 458999999999 56678877777 999 999999998 443221
Q ss_pred CC----CCC-------Ccchhh--H---------HHHHHHHHHHHHHHccCCCEEEEEEe
Q 002323 441 PR----AGR-------SSQYCT--D---------AVVHVCELAAEWRQKFHSDVVVDLVC 478 (936)
Q Consensus 441 ~~----~~r-------ss~y~t--D---------AV~~a~~~A~e~rr~f~~pvlIdlv~ 478 (936)
.. ..+ ...|.. . .-....+.|++.+.+.++|+|||+.+
T Consensus 485 ~q~~~~~~~~~~~~~~~~d~~~~a~a~G~~~~~v~~~~~l~~al~~a~~~~~p~liev~i 544 (570)
T PRK06725 485 WQEMFYENRLSESKIGSPDFVKVAEAYGVKGLRATNSTEAKQVMLEAFAHEGPVVVDFCV 544 (570)
T ss_pred HHHHhcCCccccCcCCCCCHHHHHHHCCCeEEEeCCHHHHHHHHHHHHhCCCCEEEEEEe
Confidence 00 000 011210 0 11233455566666678999999998
No 68
>PRK07092 benzoylformate decarboxylase; Reviewed
Probab=97.18 E-value=0.00053 Score=81.68 Aligned_cols=97 Identities=18% Similarity=0.137 Sum_probs=65.5
Q ss_pred CCCccccceeechhHHHHHhcCCCCCCceEEEEEecCcccCCCchHHHhhhcc---CCCCCccccEEEEEEeCC-ccccc
Q 002323 364 SHLEAVDPVVVGKTRAKQYYSHDVDRTKNMGVLIHGDGSFAGQGVVYETLHLS---ALPNYTTGGTIHIVVNNQ-VAFTT 439 (936)
Q Consensus 364 SHLeav~PVa~G~ArA~q~~~~d~~~~~~v~v~~hGDgA~sGQGvv~EtLNlA---~LP~Y~~GGtIhIV~NNQ-igfTT 439 (936)
+.+|...|.++|++.|.. + .-+||+.|||+|. .+. +.|+.+ +|| +++||.||+ ||+..
T Consensus 407 g~mG~~lp~aiGa~la~p----~-----~~vv~i~GDG~f~-~~~--~eL~ta~~~~lp------~~~vv~NN~~~~~~~ 468 (530)
T PRK07092 407 GGLGYGLPAAVGVALAQP----G-----RRVIGLIGDGSAM-YSI--QALWSAAQLKLP------VTFVILNNGRYGALR 468 (530)
T ss_pred CcccchHHHHHHHHHhCC----C-----CeEEEEEeCchHh-hhH--HHHHHHHHhCCC------cEEEEEeChHHHHHH
Confidence 558999999999998852 1 4679999999998 764 556665 999 999999999 88643
Q ss_pred CCC------CC-----CCcchhh-------H----HHHHHHHHHHHHHHccCCCEEEEEEe
Q 002323 440 DPR------AG-----RSSQYCT-------D----AVVHVCELAAEWRQKFHSDVVVDLVC 478 (936)
Q Consensus 440 ~~~------~~-----rss~y~t-------D----AV~~a~~~A~e~rr~f~~pvlIdlv~ 478 (936)
... .. ....|.. . .-....+.|++.+.+.++|+|||+.+
T Consensus 469 ~~~~~~~~~~~~~~~~~~~d~~~~a~~~G~~~~~v~~~~~l~~al~~a~~~~~p~liev~~ 529 (530)
T PRK07092 469 WFAPVFGVRDVPGLDLPGLDFVALARGYGCEAVRVSDAAELADALARALAADGPVLVEVEV 529 (530)
T ss_pred HHHHhhCCCCCCCCCCCCCCHHHHHHHCCCeEEEeCCHHHHHHHHHHHHhCCCCEEEEEEc
Confidence 100 00 0011111 0 11234456666666788999999975
No 69
>PRK08327 acetolactate synthase catalytic subunit; Validated
Probab=97.14 E-value=0.0016 Score=78.52 Aligned_cols=97 Identities=22% Similarity=0.265 Sum_probs=67.3
Q ss_pred CccccceeechhHHHHHhcCCCCCCceEEEEEecCcccCCCchHHHhhhcc---CCCCCccccEEEEEEeC-CcccccC-
Q 002323 366 LEAVDPVVVGKTRAKQYYSHDVDRTKNMGVLIHGDGSFAGQGVVYETLHLS---ALPNYTTGGTIHIVVNN-QVAFTTD- 440 (936)
Q Consensus 366 Leav~PVa~G~ArA~q~~~~d~~~~~~v~v~~hGDgA~sGQGvv~EtLNlA---~LP~Y~~GGtIhIV~NN-QigfTT~- 440 (936)
+|...|-++|++.|. .+ .-+|++.|||+|. .+...+.|+.+ +|| +++||.|| +||+.-.
T Consensus 432 mG~~lp~aiGa~la~----p~-----~~vv~i~GDG~f~-~~~~e~~l~ta~~~~l~------~~ivv~NN~~yg~~~~~ 495 (569)
T PRK08327 432 LGWALGAALGAKLAT----PD-----RLVIATVGDGSFI-FGVPEAAHWVAERYGLP------VLVVVFNNGGWLAVKEA 495 (569)
T ss_pred CCcchHHHHHHhhcC----CC-----CeEEEEecCccee-ecCcHHHHHHHHHhCCC------EEEEEEeCcccccchhH
Confidence 777778888877763 22 5699999999997 77544456544 999 99999999 6776310
Q ss_pred -----CC-------CC------CCcchhh---------------HHHHHHHHHHHHHHHccCCCEEEEEEe
Q 002323 441 -----PR-------AG------RSSQYCT---------------DAVVHVCELAAEWRQKFHSDVVVDLVC 478 (936)
Q Consensus 441 -----~~-------~~------rss~y~t---------------DAV~~a~~~A~e~rr~f~~pvlIdlv~ 478 (936)
.. .. ....|+. +.+..+.+.|++.++++++|+|||+.+
T Consensus 496 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~~la~a~G~~~~~v~~~~el~~al~~a~~~~~~~~gp~liev~v 566 (569)
T PRK08327 496 VLEVYPEGYAARKGTFPGTDFDPRPDFAKIAEAFGGYGERVEDPEELKGALRRALAAVRKGRRSAVLDVIV 566 (569)
T ss_pred HhhhCcccccccccccccccCCCCCCHHHHHHhCCCCceEeCCHHHHHHHHHHHHHHHhcCCCcEEEEEEc
Confidence 00 00 0012221 177888888888877778999999975
No 70
>cd02013 TPP_Xsc_like Thiamine pyrophosphate (TPP) family, Xsc-like subfamily, TPP-binding module; composed of proteins similar to Alcaligenes defragrans sulfoacetaldehyde acetyltransferase (Xsc). Xsc plays a key role in the degradation of taurine, catalyzing the desulfonation of 2-sulfoacetaldehyde into sulfite and acetyl phosphate. This enzyme requires TPP and divalent metal ions for activity.
Probab=97.13 E-value=0.00038 Score=72.60 Aligned_cols=98 Identities=20% Similarity=0.280 Sum_probs=63.6
Q ss_pred CccccceeechhHHHHHhcCCCCCCceEEEEEecCcccCCCchHHHhhhcc--CCCCCccccEEEEEEeCC-cccccC--
Q 002323 366 LEAVDPVVVGKTRAKQYYSHDVDRTKNMGVLIHGDGSFAGQGVVYETLHLS--ALPNYTTGGTIHIVVNNQ-VAFTTD-- 440 (936)
Q Consensus 366 Leav~PVa~G~ArA~q~~~~d~~~~~~v~v~~hGDgA~sGQGvv~EtLNlA--~LP~Y~~GGtIhIV~NNQ-igfTT~-- 440 (936)
+|...|.++|++.|.. + .-+||+.|||+|. - ...|-...+ +|| +|+||.||+ ||+...
T Consensus 55 mG~~lpaaiGa~la~p----~-----r~vv~i~GDG~f~-m-~~~eL~Ta~~~~lp------vi~vV~NN~~yg~~~~~q 117 (196)
T cd02013 55 CGYALPAIIGAKAAAP----D-----RPVVAIAGDGAWG-M-SMMEIMTAVRHKLP------VTAVVFRNRQWGAEKKNQ 117 (196)
T ss_pred cccHHHHHHHHHHhCC----C-----CcEEEEEcchHHh-c-cHHHHHHHHHhCCC------eEEEEEECchhHHHHHHH
Confidence 7888899999988743 2 4579999999996 5 356766655 999 999996664 565331
Q ss_pred ---CCC------CCCcchhh---------------HHHHHHHHHHHHHHHccCCCEEEEEEeeec
Q 002323 441 ---PRA------GRSSQYCT---------------DAVVHVCELAAEWRQKFHSDVVVDLVCYRR 481 (936)
Q Consensus 441 ---~~~------~rss~y~t---------------DAV~~a~~~A~e~rr~f~~pvlIdlv~YRr 481 (936)
... .....|.. +++..+.+.|++..+ .++|+|||+.+.+.
T Consensus 118 ~~~~~~~~~~~~~~~~d~~~lA~a~G~~~~~v~~~~el~~al~~a~~~~~-~~~p~liev~v~~~ 181 (196)
T cd02013 118 VDFYNNRFVGTELESESFAKIAEACGAKGITVDKPEDVGPALQKAIAMMA-EGKTTVIEIVCDQE 181 (196)
T ss_pred HHHcCCCcccccCCCCCHHHHHHHCCCEEEEECCHHHHHHHHHHHHhcCC-CCCeEEEEEEeCcc
Confidence 000 00111110 156566666665443 47899999998643
No 71
>PRK11865 pyruvate ferredoxin oxidoreductase subunit beta; Provisional
Probab=97.13 E-value=0.0018 Score=72.16 Aligned_cols=61 Identities=21% Similarity=0.199 Sum_probs=46.7
Q ss_pred cCCCccccceeechhHHHHHhcCCCCCCceEEEEEecCcccCCCchHHHhhhcc--CCCCCccccEEEEEEeCCc
Q 002323 363 PSHLEAVDPVVVGKTRAKQYYSHDVDRTKNMGVLIHGDGSFAGQGVVYETLHLS--ALPNYTTGGTIHIVVNNQV 435 (936)
Q Consensus 363 PSHLeav~PVa~G~ArA~q~~~~d~~~~~~v~v~~hGDgA~sGQGvv~EtLNlA--~LP~Y~~GGtIhIV~NNQi 435 (936)
-|+.|...++|.|.++|.+..+.+ .-+|++.|||++.--|. ....+.+ +.+ ++|||.||+.
T Consensus 68 ~~~fg~~~a~a~Gi~~a~~~~~~~-----~~Vv~~~GDG~~~dIG~-~~L~~a~~r~~n------i~~ivlDNe~ 130 (299)
T PRK11865 68 HVAFENAAAVASGIERAVKALGKK-----VNVVAIGGDGGTADIGF-QSLSGAMERGHN------ILYLMYDNEA 130 (299)
T ss_pred hhhhcchHHHHHHHHHHHHHhcCC-----CeEEEEeCCchHhhccH-HHHHHHHHcCCC------eEEEEECCcc
Confidence 355789999999999998765432 57999999999974453 3333333 889 9999999986
No 72
>cd02005 TPP_PDC_IPDC Thiamine pyrophosphate (TPP) family, PDC_IPDC subfamily, TPP-binding module; composed of proteins similar to pyruvate decarboxylase (PDC) and indolepyruvate decarboxylase (IPDC). PDC, a key enzyme in alcoholic fermentation, catalyzes the conversion of pyruvate to acetaldehyde and CO2. It is able to utilize other 2-oxo acids as substrates. In plants and various plant-associated bacteria, IPDC plays a role in the indole-3-pyruvic acid (IPA) pathway, a tryptophan-dependent biosynthetic route to indole-3-acetaldehyde (IAA). IPDC catalyzes the decarboxylation of IPA to IAA. Both PDC and IPDC depend on TPP and Mg2+ as cofactors.
Probab=97.06 E-value=0.0012 Score=68.21 Aligned_cols=98 Identities=19% Similarity=0.185 Sum_probs=60.6
Q ss_pred CccccceeechhHHHHHhcCCCCCCceEEEEEecCcccCCCchHHHhhhcc--CCCCCccccEEEEEEeCC-cccccCCC
Q 002323 366 LEAVDPVVVGKTRAKQYYSHDVDRTKNMGVLIHGDGSFAGQGVVYETLHLS--ALPNYTTGGTIHIVVNNQ-VAFTTDPR 442 (936)
Q Consensus 366 Leav~PVa~G~ArA~q~~~~d~~~~~~v~v~~hGDgA~sGQGvv~EtLNlA--~LP~Y~~GGtIhIV~NNQ-igfTT~~~ 442 (936)
+|...|.++|++.|.. + ..+|++.|||+| +-.++|-.+++ ++| ++.||.||+ ||+.....
T Consensus 52 mG~~l~~aiGaala~~----~-----~~vv~i~GDG~f--~~~~~el~ta~~~~~p------~~ivV~nN~~~~~~~~~~ 114 (183)
T cd02005 52 IGYSVPAALGAALAAP----D-----RRVILLVGDGSF--QMTVQELSTMIRYGLN------PIIFLINNDGYTIERAIH 114 (183)
T ss_pred HhhhHHHHHHHHHhCC----C-----CeEEEEECCchh--hccHHHHHHHHHhCCC------CEEEEEECCCcEEEEEec
Confidence 6677788888887743 2 578999999999 55778877766 788 777776665 56533111
Q ss_pred CCC-------Ccchh-----------hH----HHHHHHHHHHHHHHc-cCCCEEEEEEeee
Q 002323 443 AGR-------SSQYC-----------TD----AVVHVCELAAEWRQK-FHSDVVVDLVCYR 480 (936)
Q Consensus 443 ~~r-------ss~y~-----------tD----AV~~a~~~A~e~rr~-f~~pvlIdlv~YR 480 (936)
... ...|+ .. .-.+-.+.|++.+.+ .++|+|||+.+.|
T Consensus 115 ~~~~~~~~~~~~d~~~ia~a~G~~~~~~~~~v~~~~el~~al~~a~~~~~~p~liev~~~~ 175 (183)
T cd02005 115 GPEASYNDIANWNYTKLPEVFGGGGGGLSFRVKTEGELDEALKDALFNRDKLSLIEVILPK 175 (183)
T ss_pred cCCcCcccCCCCCHHHHHHHhCCCccccEEEecCHHHHHHHHHHHHhcCCCcEEEEEEcCc
Confidence 110 00111 00 011223455555555 7899999999854
No 73
>cd02006 TPP_Gcl Thiamine pyrophosphate (TPP) family, Gcl subfamily, TPP-binding module; composed of proteins similar to Escherichia coli glyoxylate carboligase (Gcl). E. coli glyoxylate carboligase, plays a key role in glyoxylate metabolism where it catalyzes the condensation of two molecules of glyoxylate to give tartronic semialdehyde and carbon dioxide. This enzyme requires TPP, magnesium ion and FAD as cofactors.
Probab=97.03 E-value=0.00028 Score=73.77 Aligned_cols=55 Identities=29% Similarity=0.392 Sum_probs=39.0
Q ss_pred CccccceeechhHHHHHhcCCCCCCceEEEEEecCcccCCCchHHHhhhcc--CCCCCccccEEEEEEeCC-ccc
Q 002323 366 LEAVDPVVVGKTRAKQYYSHDVDRTKNMGVLIHGDGSFAGQGVVYETLHLS--ALPNYTTGGTIHIVVNNQ-VAF 437 (936)
Q Consensus 366 Leav~PVa~G~ArA~q~~~~d~~~~~~v~v~~hGDgA~sGQGvv~EtLNlA--~LP~Y~~GGtIhIV~NNQ-igf 437 (936)
+|...|-++|++.|.. + .-+|++.|||+|. =...|=...+ +|| +++||.||+ ||+
T Consensus 59 mG~~lpaaiGa~la~p----~-----~~vv~i~GDG~f~--m~~~eL~Ta~~~~lp------viivV~NN~~yg~ 116 (202)
T cd02006 59 LGWTVPAALGVAAADP----D-----RQVVALSGDYDFQ--FMIEELAVGAQHRIP------YIHVLVNNAYLGL 116 (202)
T ss_pred hhhhhHHHHhHHhhCC----C-----CeEEEEEeChHhh--ccHHHHHHHHHhCCC------eEEEEEeCchHHH
Confidence 7777888889888853 2 3578999999996 1122222222 999 999999998 554
No 74
>PRK06163 hypothetical protein; Provisional
Probab=97.02 E-value=0.0013 Score=69.35 Aligned_cols=114 Identities=14% Similarity=0.100 Sum_probs=62.8
Q ss_pred CccccceeechhHHHHHhcCCCCCCceEEEEEecCcccC-CCchHHHhhhccCCCCCccccEEEEEEeC-CcccccCCCC
Q 002323 366 LEAVDPVVVGKTRAKQYYSHDVDRTKNMGVLIHGDGSFA-GQGVVYETLHLSALPNYTTGGTIHIVVNN-QVAFTTDPRA 443 (936)
Q Consensus 366 Leav~PVa~G~ArA~q~~~~d~~~~~~v~v~~hGDgA~s-GQGvv~EtLNlA~LP~Y~~GGtIhIV~NN-QigfTT~~~~ 443 (936)
+|...|.|+|++.|.. + .-+|++.|||+|. .-+...-....-++| +++||.|| .||+.-....
T Consensus 59 MG~glpaAiGaalA~p----~-----r~Vv~i~GDG~f~m~~~eL~Ta~~~~~lp------i~ivV~NN~~yg~~~~~~~ 123 (202)
T PRK06163 59 MGLAFPIALGVALAQP----K-----RRVIALEGDGSLLMQLGALGTIAALAPKN------LTIIVMDNGVYQITGGQPT 123 (202)
T ss_pred cccHHHHHHHHHHhCC----C-----CeEEEEEcchHHHHHHHHHHHHHHhcCCC------eEEEEEcCCchhhcCCccC
Confidence 7888899999998852 1 3478999999983 012222222222689 99999999 5775321100
Q ss_pred CC-C-cchhh-------H-----HHHHHHHHHHHHHHccCCCEEEEEEeeecCCCCCCCCCC-CCCHHHHH
Q 002323 444 GR-S-SQYCT-------D-----AVVHVCELAAEWRQKFHSDVVVDLVCYRRFGHNEIDEPS-FTQPKMYQ 499 (936)
Q Consensus 444 ~r-s-s~y~t-------D-----AV~~a~~~A~e~rr~f~~pvlIdlv~YRr~GHne~Ddp~-ytqp~~y~ 499 (936)
.. . ..|.. . .-..-...|++.+.+.++|+|||+.+-+. .+-|. .+.|.+.+
T Consensus 124 ~~~~~~Df~~lA~a~G~~~~~~v~~~~el~~al~~a~~~~~p~lIeV~i~~~-----~~~~~~~~~~~~~~ 189 (202)
T PRK06163 124 LTSQTVDVVAIARGAGLENSHWAADEAHFEALVDQALSGPGPSFIAVRIDDK-----PGVGTTERDPAQIR 189 (202)
T ss_pred CCCCCCCHHHHHHHCCCceEEEeCCHHHHHHHHHHHHhCCCCEEEEEEecCC-----CCCCCCCCCHHHHH
Confidence 00 0 11110 0 00111233444444568999999988432 22222 46676654
No 75
>cd06586 TPP_enzyme_PYR Pyrimidine (PYR) binding domain of thiamine pyrophosphate (TPP)-dependent enzymes. Thiamine pyrophosphate (TPP) family, pyrimidine (PYR) binding domain; found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this group. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. In the case of 2-oxoisovalerate dehydrogenase (2OXO), sulfopyruvate deca
Probab=97.00 E-value=0.0023 Score=62.90 Aligned_cols=116 Identities=16% Similarity=0.157 Sum_probs=81.4
Q ss_pred ceEEEccCcchhHHHHHHhhhccCCCCcceeeeccchhhhhhHHHHHHHHHhhhhhhhcCccccEEEcCc-cCC--CCCc
Q 002323 680 MFTVSNSSLSEFGVLGFELGYSMENPNSLVLWEAQFGDFANGAQVIFDQFLSSGESKWLRQTGLVVLLPH-GYD--GQGP 756 (936)
Q Consensus 680 ~~rV~nspLSE~avlG~e~G~sl~g~~~LviwEaqFgDF~n~Aq~iidqfi~~~~~kw~~~s~lv~~lPh-G~~--G~Gp 756 (936)
+.+.++.+.+|.+.++.+.||+..+.++ +...++|.|+..+ ++++.+. |....|++++..+ |.. +.+.
T Consensus 34 ~~~~~~~~~~E~~a~~~A~G~a~~~~~~--v~~~~~gpg~~~~---~~~l~~a----~~~~~Pvl~i~~~~~~~~~~~~~ 104 (154)
T cd06586 34 DKRIIDTVIHELGAAGAAAGYARAGGPP--VVIVTSGTGLLNA---INGLADA----AAEHLPVVFLIGARGISAQAKQT 104 (154)
T ss_pred CCceEEeeCCHHHHHHHHHHHHHhhCCE--EEEEcCCCcHHHH---HHHHHHH----HhcCCCEEEEeCCCChhhhccCc
Confidence 4577889999999999999999998655 8889999998766 7776632 3446899998854 332 3444
Q ss_pred cccCchhhhhhhcCCCCCCcccCCCchhhhhccccceEEEEcCCHHHHHHHHHHHHh--cCCCCcEEEEccc
Q 002323 757 EHSSARLERFLQMSDDNPFVIPEMDPTLRKQIQECNWQIVNVTTPANYFHVLRRQIH--RGFRKPLIVISPK 826 (936)
Q Consensus 757 eHSs~RiERfLQl~~~~~~~~~~~pg~~~~~~~~~N~~Vv~pstpa~~fhlLrrq~~--r~~~~Pli~~~pK 826 (936)
.|+..- . .++.++++ +.+..| ++.+....++++++ ...+.|+++..|+
T Consensus 105 ~q~~~~-~----------~~~~~~~~----------~~~~~~-~~~~~~~~~~~a~~~a~~~~gPv~l~ip~ 154 (154)
T cd06586 105 FQSMFD-L----------GMYRSIPE----------ANISSP-SPAELPAGIDHAIRTAYASQGPVVVRLPR 154 (154)
T ss_pred ccccCH-H----------HHHHHhhh----------eEEEeC-CHHHHHHHHHHHHHHHhcCCCCEEEEccC
Confidence 444331 1 23445554 777665 66788888888876 2347899998774
No 76
>cd02009 TPP_SHCHC_synthase Thiamine pyrophosphate (TPP) family, SHCHC synthase subfamily, TPP-binding module; composed of proteins similar to Escherichia coli 2-succinyl-6-hydroxyl-2,4-cyclohexadiene-1-carboxylic acid (SHCHC) synthase (also called MenD). SHCHC synthase plays a key role in the menaquinone biosynthetic pathway, converting isochorismate and 2-oxoglutarate to SHCHC, pyruvate and carbon dioxide. The enzyme requires TPP and a divalent metal cation for activity.
Probab=96.88 E-value=0.0013 Score=67.44 Aligned_cols=56 Identities=27% Similarity=0.300 Sum_probs=40.8
Q ss_pred CCCccccceeechhHHHHHhcCCCCCCceEEEEEecCcccCCCchHHHhhhcc--CCCCCccccEEEEEEeCC-ccc
Q 002323 364 SHLEAVDPVVVGKTRAKQYYSHDVDRTKNMGVLIHGDGSFAGQGVVYETLHLS--ALPNYTTGGTIHIVVNNQ-VAF 437 (936)
Q Consensus 364 SHLeav~PVa~G~ArA~q~~~~d~~~~~~v~v~~hGDgA~sGQGvv~EtLNlA--~LP~Y~~GGtIhIV~NNQ-igf 437 (936)
+.++...|.++|++.|. + .-+|++.|||+|- -. ..|=...+ ++| +++||.||+ ||+
T Consensus 51 g~mG~~l~~aiGa~la~-----~-----~~Vv~i~GDGsf~-m~-~~eL~ta~~~~l~------v~ivVlNN~~~g~ 109 (175)
T cd02009 51 SGIDGTLSTALGIALAT-----D-----KPTVLLTGDLSFL-HD-LNGLLLGKQEPLN------LTIVVINNNGGGI 109 (175)
T ss_pred cchhhHHHHHHHHHhcC-----C-----CCEEEEEehHHHH-Hh-HHHHHhccccCCC------eEEEEEECCCCch
Confidence 34778889999999985 1 2377899999995 22 34444444 899 999999997 453
No 77
>COG3959 Transketolase, N-terminal subunit [Carbohydrate transport and metabolism]
Probab=96.86 E-value=0.0059 Score=65.07 Aligned_cols=107 Identities=19% Similarity=0.142 Sum_probs=73.5
Q ss_pred ccCCCccccceeechhHHHHHhcCCCCCCceEEEEEecCcccCCCchHHHhhhcc---CCCCCccccEEEEEEeCCcccc
Q 002323 362 NPSHLEAVDPVVVGKTRAKQYYSHDVDRTKNMGVLIHGDGSFAGQGVVYETLHLS---ALPNYTTGGTIHIVVNNQVAFT 438 (936)
Q Consensus 362 NPSHLeav~PVa~G~ArA~q~~~~d~~~~~~v~v~~hGDgA~sGQGvv~EtLNlA---~LP~Y~~GGtIhIV~NNQigfT 438 (936)
|.--||...+|++|+|.|.++++.+ .-+.++.|||-.. +|.+||++..| +|- -+|-||--|..-.+
T Consensus 117 stGSLGqGLsvavGmAlg~kl~~~~-----~~VyvilGDGEl~-EG~~WEAam~Aah~~L~-----NLiaivD~N~~Qld 185 (243)
T COG3959 117 STGSLGQGLSVAVGMALGAKLKGSP-----YRVYVILGDGELD-EGQVWEAAMTAAHYKLD-----NLIAIVDRNKLQLD 185 (243)
T ss_pred cCCcccccchHHHHHHHHHhhcCCC-----ceEEEEecCcccc-cccHHHHHHHHHHhccC-----cEEEEEecCCcccC
Confidence 4455999999999999999999876 7889999999997 99999999887 554 35555555654333
Q ss_pred cCCCCCCCcchhhH--------------HHHHHHHHHHHHHHccC-CCEEEEEEee
Q 002323 439 TDPRAGRSSQYCTD--------------AVVHVCELAAEWRQKFH-SDVVVDLVCY 479 (936)
Q Consensus 439 T~~~~~rss~y~tD--------------AV~~a~~~A~e~rr~f~-~pvlIdlv~Y 479 (936)
-..++--+..-..| --++....|++-++..+ +|.+|=+.|-
T Consensus 186 G~t~~i~~~~pL~~k~eAFGw~V~evdG~d~~~i~~a~~~~~~~~~rP~~IIa~Tv 241 (243)
T COG3959 186 GETEEIMPKEPLADKWEAFGWEVIEVDGHDIEEIVEALEKAKGSKGRPTVIIAKTV 241 (243)
T ss_pred CchhhccCcchhHHHHHhcCceEEEEcCcCHHHHHHHHHhhhccCCCCeEEEEecc
Confidence 33222222211122 22344555666666644 9999987663
No 78
>PRK08155 acetolactate synthase catalytic subunit; Validated
Probab=96.82 E-value=0.0014 Score=78.76 Aligned_cols=98 Identities=13% Similarity=0.123 Sum_probs=63.2
Q ss_pred CCCccccceeechhHHHHHhcCCCCCCceEEEEEecCcccCCCchHHHhhhcc--CCCCCccccEEEEEEeCC-cccccC
Q 002323 364 SHLEAVDPVVVGKTRAKQYYSHDVDRTKNMGVLIHGDGSFAGQGVVYETLHLS--ALPNYTTGGTIHIVVNNQ-VAFTTD 440 (936)
Q Consensus 364 SHLeav~PVa~G~ArA~q~~~~d~~~~~~v~v~~hGDgA~sGQGvv~EtLNlA--~LP~Y~~GGtIhIV~NNQ-igfTT~ 440 (936)
+.+|...|.++|++.|.. + .-+|++.|||+|. - .++|-...+ +|| +|+||.||+ ||+...
T Consensus 419 g~mG~~lpaaiGa~la~~----~-----~~vv~i~GDGsf~-~-~~~eL~ta~~~~lp------vi~vV~NN~~~g~~~~ 481 (564)
T PRK08155 419 GTMGFGLPAAIGAALANP----E-----RKVLCFSGDGSLM-M-NIQEMATAAENQLD------VKIILMNNEALGLVHQ 481 (564)
T ss_pred ccccchhHHHHHHHHhCC----C-----CcEEEEEccchhh-c-cHHHHHHHHHhCCC------eEEEEEeCCcccccHH
Confidence 348888899999998852 2 4579999999996 4 467744444 999 999999998 776431
Q ss_pred C------CCCCC------cchhh--H---------HHHHHHHHHHHHHHccCCCEEEEEEe
Q 002323 441 P------RAGRS------SQYCT--D---------AVVHVCELAAEWRQKFHSDVVVDLVC 478 (936)
Q Consensus 441 ~------~~~rs------s~y~t--D---------AV~~a~~~A~e~rr~f~~pvlIdlv~ 478 (936)
. ..... ..|.. . ...+-...|++.+.+.++|+|||+++
T Consensus 482 ~q~~~~~~~~~~~~~~~~~d~~~~a~a~G~~~~~v~~~~el~~al~~a~~~~~p~lIeV~~ 542 (564)
T PRK08155 482 QQSLFYGQRVFAATYPGKINFMQIAAGFGLETCDLNNEADPQAALQEAINRPGPALIHVRI 542 (564)
T ss_pred HHHHhcCCCeeeccCCCCCCHHHHHHHCCCeEEEeCCHHHHHHHHHHHHhCCCCEEEEEEe
Confidence 0 00001 11210 0 11222344555555578999999998
No 79
>PRK08266 hypothetical protein; Provisional
Probab=96.80 E-value=0.00085 Score=80.04 Aligned_cols=104 Identities=22% Similarity=0.241 Sum_probs=65.1
Q ss_pred CCCccccceeechhHHHHHhcCCCCCCceEEEEEecCcccCCCchHHHhhhcc--CCCCCccccEEEEEEeCC-cccccC
Q 002323 364 SHLEAVDPVVVGKTRAKQYYSHDVDRTKNMGVLIHGDGSFAGQGVVYETLHLS--ALPNYTTGGTIHIVVNNQ-VAFTTD 440 (936)
Q Consensus 364 SHLeav~PVa~G~ArA~q~~~~d~~~~~~v~v~~hGDgA~sGQGvv~EtLNlA--~LP~Y~~GGtIhIV~NNQ-igfTT~ 440 (936)
..+|...|.++|++.|. .+ .-+|++.|||+|. .+ ..|-...+ +|| +++||.||+ ||+...
T Consensus 402 GsmG~~lp~aiGa~la~----p~-----~~vv~v~GDG~f~-~~-~~eL~ta~~~~lp------v~ivv~NN~~y~~~~~ 464 (542)
T PRK08266 402 GTLGYGFPTALGAKVAN----PD-----RPVVSITGDGGFM-FG-VQELATAVQHNIG------VVTVVFNNNAYGNVRR 464 (542)
T ss_pred cccccHHHHHHHHHHhC----CC-----CcEEEEEcchhhh-cc-HHHHHHHHHhCCC------eEEEEEeCCcchHHHH
Confidence 34777788888887764 22 4579999999997 66 34433333 999 999999994 886431
Q ss_pred CC----CCCC-------cchhh--H---------HHHHHHHHHHHHHHccCCCEEEEEEeeecCCC
Q 002323 441 PR----AGRS-------SQYCT--D---------AVVHVCELAAEWRQKFHSDVVVDLVCYRRFGH 484 (936)
Q Consensus 441 ~~----~~rs-------s~y~t--D---------AV~~a~~~A~e~rr~f~~pvlIdlv~YRr~GH 484 (936)
.. ..+. ..|.. . .-....+.|++.+.+.++|+|||+.++|-..+
T Consensus 465 ~~~~~~~~~~~~~~~~~~d~~~la~a~G~~~~~v~~~~el~~al~~a~~~~~p~liev~i~~~~~~ 530 (542)
T PRK08266 465 DQKRRFGGRVVASDLVNPDFVKLAESFGVAAFRVDSPEELRAALEAALAHGGPVLIEVPVPRGSEA 530 (542)
T ss_pred HHHHhcCCCcccCCCCCCCHHHHHHHcCCeEEEeCCHHHHHHHHHHHHhCCCcEEEEEEecCCCCc
Confidence 10 0000 01110 0 11233455555555678999999999886443
No 80
>cd03371 TPP_PpyrDC Thiamine pyrophosphate (TPP) family, PpyrDC subfamily, TPP-binding module; composed of proteins similar to phosphonopyruvate decarboxylase (PpyrDC) proteins. PpyrDC is a homotrimeric enzyme which functions in the biosynthesis of C-P compounds such as bialaphos tripeptide in Streptomyces hygroscopicus. These proteins require TPP and divalent metal cation cofactors.
Probab=96.75 E-value=0.0036 Score=65.15 Aligned_cols=118 Identities=15% Similarity=0.114 Sum_probs=62.3
Q ss_pred CCCccccceeechhHHHHHhcCCCCCCceEEEEEecCcccCCCchHHHhhhcc--CC-CCCccccEEEEEEeCCc-cccc
Q 002323 364 SHLEAVDPVVVGKTRAKQYYSHDVDRTKNMGVLIHGDGSFAGQGVVYETLHLS--AL-PNYTTGGTIHIVVNNQV-AFTT 439 (936)
Q Consensus 364 SHLeav~PVa~G~ArA~q~~~~d~~~~~~v~v~~hGDgA~sGQGvv~EtLNlA--~L-P~Y~~GGtIhIV~NNQi-gfTT 439 (936)
+.+|...|.|+|++.|.. + .-+|++.|||+|. - ...|-...+ ++ | +++||.||+. |+.-
T Consensus 48 g~mG~~lpaAiGaala~p----~-----~~Vv~i~GDG~f~-m-~~~eL~ta~~~~l~~------i~ivV~NN~~yg~~~ 110 (188)
T cd03371 48 GSMGHASQIALGIALARP----D-----RKVVCIDGDGAAL-M-HMGGLATIGGLAPAN------LIHIVLNNGAHDSVG 110 (188)
T ss_pred CccccHHHHHHHHHHhCC----C-----CcEEEEeCCcHHH-h-hccHHHHHHHcCCCC------cEEEEEeCchhhccC
Confidence 458888899999988853 1 3478999999993 1 111211222 44 7 8888888874 3321
Q ss_pred CCC-CCCCcchhh-------H-----HHHHHHHHHHHHHHccCCCEEEEEEeeecCCCCCCCCCCCCCHHHHHH
Q 002323 440 DPR-AGRSSQYCT-------D-----AVVHVCELAAEWRQKFHSDVVVDLVCYRRFGHNEIDEPSFTQPKMYQV 500 (936)
Q Consensus 440 ~~~-~~rss~y~t-------D-----AV~~a~~~A~e~rr~f~~pvlIdlv~YRr~GHne~Ddp~ytqp~~y~~ 500 (936)
... ......|.. . .-....+.|++.+.+.++|+|||+.+=+-.+ ++..- .++++.+++.
T Consensus 111 ~~~~~~~~~d~~~~A~a~G~~~~~~v~~~~el~~al~~a~~~~~p~lIev~~~~~~~-~~~~~-~~~~~~~~~~ 182 (188)
T cd03371 111 GQPTVSFDVSLPAIAKACGYRAVYEVPSLEELVAALAKALAADGPAFIEVKVRPGSR-SDLGR-PTTSPIENKE 182 (188)
T ss_pred CcCCCCCCCCHHHHHHHcCCceEEecCCHHHHHHHHHHHHhCCCCEEEEEEecCCCC-CCCCC-CCCCHHHHHH
Confidence 100 000001110 0 0122233444444456899999999833222 22221 2566666643
No 81
>cd02008 TPP_IOR_alpha Thiamine pyrophosphate (TPP) family, IOR-alpha subfamily, TPP-binding module; composed of proteins similar to indolepyruvate ferredoxin oxidoreductase (IOR) alpha subunit. IOR catalyzes the oxidative decarboxylation of arylpyruvates, such as indolepyruvate or phenylpyruvate, which are generated by the transamination of aromatic amino acids, to the corresponding aryl acetyl-CoA.
Probab=96.70 E-value=0.0026 Score=65.32 Aligned_cols=56 Identities=18% Similarity=0.300 Sum_probs=42.1
Q ss_pred CCCccccceeechhHHHHHhcCCCCCCceEEEEEecCcccCCCchHHHhhhcc--CCCCCccccEEEEEEeCCc
Q 002323 364 SHLEAVDPVVVGKTRAKQYYSHDVDRTKNMGVLIHGDGSFAGQGVVYETLHLS--ALPNYTTGGTIHIVVNNQV 435 (936)
Q Consensus 364 SHLeav~PVa~G~ArA~q~~~~d~~~~~~v~v~~hGDgA~sGQGvv~EtLNlA--~LP~Y~~GGtIhIV~NNQi 435 (936)
+.+|...|.|+|++.|.. + .-+|++.|||+|. ...+.|-...+ ++| +++||.||+.
T Consensus 51 g~mG~gl~~AiGa~la~p----~-----~~Vv~i~GDG~f~-~~g~~eL~ta~~~~l~------i~vvV~nN~~ 108 (178)
T cd02008 51 TCMGASIGVAIGMAKASE----D-----KKVVAVIGDSTFF-HSGILGLINAVYNKAN------ITVVILDNRT 108 (178)
T ss_pred ccCccHHHHHhhHHhhCC----C-----CCEEEEecChHHh-hccHHHHHHHHHcCCC------EEEEEECCcc
Confidence 458888999999999864 1 2367899999995 43255555544 999 9999998874
No 82
>cd02010 TPP_ALS Thiamine pyrophosphate (TPP) family, Acetolactate synthase (ALS) subfamily, TPP-binding module; composed of proteins similar to Klebsiella pneumoniae ALS, a catabolic enzyme required for butanediol fermentation. ALS catalyzes the conversion of 2 molecules of pyruvate to acetolactate and carbon dioxide. ALS does not contain FAD, and requires TPP and a divalent metal cation for activity.
Probab=96.69 E-value=0.0016 Score=66.88 Aligned_cols=98 Identities=16% Similarity=0.175 Sum_probs=58.9
Q ss_pred CccccceeechhHHHHHhcCCCCCCceEEEEEecCcccCCCchHHHhhhcc--CCCCCccccEEEEEEeCC-cccccCC-
Q 002323 366 LEAVDPVVVGKTRAKQYYSHDVDRTKNMGVLIHGDGSFAGQGVVYETLHLS--ALPNYTTGGTIHIVVNNQ-VAFTTDP- 441 (936)
Q Consensus 366 Leav~PVa~G~ArA~q~~~~d~~~~~~v~v~~hGDgA~sGQGvv~EtLNlA--~LP~Y~~GGtIhIV~NNQ-igfTT~~- 441 (936)
+|...|.++|++.|.. + .-+|++.|||+|. -.. .|-...+ +|| +|+||.||+ ||+....
T Consensus 50 mG~~lp~aiGa~la~~----~-----~~vv~i~GDG~f~-m~~-~eL~ta~~~~l~------vi~vV~NN~~~g~~~~~~ 112 (177)
T cd02010 50 MGVALPGAIGAKLVYP----D-----RKVVAVSGDGGFM-MNS-QELETAVRLKIP------LVVLIWNDNGYGLIKWKQ 112 (177)
T ss_pred hhhHHHHHHHHHHhCC----C-----CcEEEEEcchHHH-hHH-HHHHHHHHHCCC------eEEEEEECCcchHHHHHH
Confidence 7777888889888742 2 4588999999995 222 3333333 899 999988886 6654210
Q ss_pred --CCCC-------Ccchhh--H---------HHHHHHHHHHHHHHccCCCEEEEEEeee
Q 002323 442 --RAGR-------SSQYCT--D---------AVVHVCELAAEWRQKFHSDVVVDLVCYR 480 (936)
Q Consensus 442 --~~~r-------ss~y~t--D---------AV~~a~~~A~e~rr~f~~pvlIdlv~YR 480 (936)
...+ ...|+. . .-.+-.+.|++.+.+.++|+|||+.+-+
T Consensus 113 ~~~~~~~~~~~~~~~d~~~~a~a~G~~~~~v~~~~el~~al~~a~~~~~p~liev~~~~ 171 (177)
T cd02010 113 EKEYGRDSGVDFGNPDFVKYAESFGAKGYRIESADDLLPVLERALAADGVHVIDCPVDY 171 (177)
T ss_pred HHhcCCcccCcCCCCCHHHHHHHCCCEEEEECCHHHHHHHHHHHHhCCCCEEEEEEecc
Confidence 0000 011111 0 1122234455555567899999999843
No 83
>PRK06112 acetolactate synthase catalytic subunit; Validated
Probab=96.68 E-value=0.0029 Score=76.28 Aligned_cols=97 Identities=18% Similarity=0.252 Sum_probs=62.2
Q ss_pred CCCccccceeechhHHHHHhcCCCCCCceEEEEEecCcccCCCchHHHhhhcc---CCCCCccccEEEEEEeCCc-cccc
Q 002323 364 SHLEAVDPVVVGKTRAKQYYSHDVDRTKNMGVLIHGDGSFAGQGVVYETLHLS---ALPNYTTGGTIHIVVNNQV-AFTT 439 (936)
Q Consensus 364 SHLeav~PVa~G~ArA~q~~~~d~~~~~~v~v~~hGDgA~sGQGvv~EtLNlA---~LP~Y~~GGtIhIV~NNQi-gfTT 439 (936)
+.+|...|.++|++.|.. + .-+|++.|||+|. . ....|+.+ +|| +++||.||+. |+..
T Consensus 437 gsmG~~l~~aiGa~la~~----~-----~~vv~i~GDGsf~-~--~~~el~ta~~~~l~------~~~vv~NN~~~g~~~ 498 (578)
T PRK06112 437 AGLGWGVPMAIGAKVARP----G-----APVICLVGDGGFA-H--VWAELETARRMGVP------VTIVVLNNGILGFQK 498 (578)
T ss_pred cccccHHHHHHHHHhhCC----C-----CcEEEEEcchHHH-h--HHHHHHHHHHhCCC------eEEEEEeCCccCCEE
Confidence 347888899999887742 2 4699999999994 3 34455555 999 9999999984 4322
Q ss_pred CCCCC----C-------CcchhhH-----------HHHHHHHHHHHHHHccCCCEEEEEEe
Q 002323 440 DPRAG----R-------SSQYCTD-----------AVVHVCELAAEWRQKFHSDVVVDLVC 478 (936)
Q Consensus 440 ~~~~~----r-------ss~y~tD-----------AV~~a~~~A~e~rr~f~~pvlIdlv~ 478 (936)
...+. + ...|+.= .-..-.+.|++.+.+.++|+|||+++
T Consensus 499 ~~~~~~~~~~~~~~~~~~~d~~~~A~a~G~~~~~v~~~~el~~al~~a~~~~gp~lIev~~ 559 (578)
T PRK06112 499 HAETVKFGTHTDACHFAAVDHAAIARACGCDGVRVEDPAELAQALAAAMAAPGPTLIEVIT 559 (578)
T ss_pred eccccccCCccccCcCCCCCHHHHHHHCCCeEEEeCCHHHHHHHHHHHHhCCCCEEEEEEc
Confidence 11100 0 0112110 11222456666666778999999998
No 84
>PF02775 TPP_enzyme_C: Thiamine pyrophosphate enzyme, C-terminal TPP binding domain; InterPro: IPR011766 A number of enzymes require thiamine pyrophosphate (TPP) (vitamin B1) as a cofactor. It has been shown [] that some of these enzymes are structurally related. This represents the C-terminal TPP binding domain of TPP enzymes.; GO: 0003824 catalytic activity, 0030976 thiamine pyrophosphate binding; PDB: 2WVA_V 1ZPD_F 2WVG_B 2WVH_B 3OE1_D 2NXW_A 2Q5L_B 2Q5Q_B 2Q5J_A 2Q5O_A ....
Probab=96.65 E-value=0.00042 Score=69.02 Aligned_cols=97 Identities=26% Similarity=0.234 Sum_probs=64.1
Q ss_pred cCCCccccceeechhHHHHHhcCCCCCCceEEEEEecCcccCCCchHHHhhhcc--CCCCCccccEEEEEEeCCcccccC
Q 002323 363 PSHLEAVDPVVVGKTRAKQYYSHDVDRTKNMGVLIHGDGSFAGQGVVYETLHLS--ALPNYTTGGTIHIVVNNQVAFTTD 440 (936)
Q Consensus 363 PSHLeav~PVa~G~ArA~q~~~~d~~~~~~v~v~~hGDgA~sGQGvv~EtLNlA--~LP~Y~~GGtIhIV~NNQigfTT~ 440 (936)
-+.+|...|.|+|++.|.. + .-+|++.|||+|. -. ..|-.+.+ ++| +++||.||+..-.+.
T Consensus 27 ~g~mG~~~~~aiGa~~a~p----~-----~~vv~i~GDG~f~-~~-~~el~ta~~~~~~------v~~vv~nN~~~~~~~ 89 (153)
T PF02775_consen 27 FGSMGYALPAAIGAALARP----D-----RPVVAITGDGSFL-MS-LQELATAVRYGLP------VVIVVLNNGGYGMTG 89 (153)
T ss_dssp TT-TTTHHHHHHHHHHHST----T-----SEEEEEEEHHHHH-HH-GGGHHHHHHTTSS------EEEEEEESSBSHHHH
T ss_pred ccccCCHHHhhhHHHhhcC----c-----ceeEEecCCccee-ec-cchhHHHhhccce------EEEEEEeCCcceEec
Confidence 3458899999999999732 2 6799999999996 44 66655555 899 999999997533321
Q ss_pred -----CCCCC-Cc-----chhhH---------------HHH--HHHHHHHHHHHccCCCEEEEE
Q 002323 441 -----PRAGR-SS-----QYCTD---------------AVV--HVCELAAEWRQKFHSDVVVDL 476 (936)
Q Consensus 441 -----~~~~r-ss-----~y~tD---------------AV~--~a~~~A~e~rr~f~~pvlIdl 476 (936)
....+ .. ....| ... +-.+.|++.+.+.++|+|||+
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~d~~~~a~a~G~~~~~v~~~~~~el~~al~~a~~~~gp~vIeV 153 (153)
T PF02775_consen 90 GQQTPFGGGRFSGVDGKTFPNPDFAALAEAFGIKGARVTTPDPEELEEALREALESGGPAVIEV 153 (153)
T ss_dssp HHHHHTTSTCHHSTBTTTSTTCGHHHHHHHTTSEEEEESCHSHHHHHHHHHHHHHSSSEEEEEE
T ss_pred cccccCcCcccccccccccccCCHHHHHHHcCCcEEEEccCCHHHHHHHHHHHHhCCCcEEEEc
Confidence 11101 00 11112 122 556677777778999999996
No 85
>TIGR03846 sulfopy_beta sulfopyruvate decarboxylase, beta subunit. Nearly every member of this protein family is the beta subunit, or else the C-terminal region, of sulfopyruvate decarboxylase, in an archaeal species capable of coenzyme M biosynthesis. However, the enzyme also occurs in Roseovarius nubinhibens ISM in a degradative pathway, where the resulting sulfoacetaldehyde is desulfonated to acetyl phosphate, then converted to acetyl-CoA (see PubMed:19581363).
Probab=96.50 E-value=0.0027 Score=65.79 Aligned_cols=95 Identities=14% Similarity=0.146 Sum_probs=57.6
Q ss_pred CccccceeechhHHHHHhcCCCCCCceEEEEEecCcccCCCchHHHhhhcc--C-CCCCccccEEEEEEeCC-cccccCC
Q 002323 366 LEAVDPVVVGKTRAKQYYSHDVDRTKNMGVLIHGDGSFAGQGVVYETLHLS--A-LPNYTTGGTIHIVVNNQ-VAFTTDP 441 (936)
Q Consensus 366 Leav~PVa~G~ArA~q~~~~d~~~~~~v~v~~hGDgA~sGQGvv~EtLNlA--~-LP~Y~~GGtIhIV~NNQ-igfTT~~ 441 (936)
+|-..|.|+|++.|. + .-+|++.|||+|. -+. .|-.-++ + +| +++||.||+ ||++-..
T Consensus 44 mG~~lpaAiGa~la~-----~-----~~Vv~i~GDG~f~-m~~-~el~ta~~~~~~p------v~~vV~NN~~yg~~~~q 105 (181)
T TIGR03846 44 MGLASSIGLGLALAT-----D-----RTVIVIDGDGSLL-MNL-GVLPTIAAESPKN------LILVILDNGAYGSTGNQ 105 (181)
T ss_pred cccHHHHHHHHHHcC-----C-----CcEEEEEcchHHH-hhh-hHHHHHHHhCCCC------eEEEEEeCCccccccCc
Confidence 666788899999885 2 3488999999996 342 3322223 6 59 999999998 5654210
Q ss_pred CCCC--Ccchhh--H-----H---H--HHHHHHHHHHHHccCCCEEEEEEee
Q 002323 442 RAGR--SSQYCT--D-----A---V--VHVCELAAEWRQKFHSDVVVDLVCY 479 (936)
Q Consensus 442 ~~~r--ss~y~t--D-----A---V--~~a~~~A~e~rr~f~~pvlIdlv~Y 479 (936)
.... ...|.. . + | ......|++ +.+.++|+|||+.+-
T Consensus 106 ~~~~~~~~d~~~lA~a~G~~~~~~v~~~~~l~~al~-a~~~~~p~li~v~~~ 156 (181)
T TIGR03846 106 PTPASRRTDLELVAKAAGIRNVEKVADEEELRDALK-ALAMKGPTFIHVKVK 156 (181)
T ss_pred CCCCCCCCCHHHHHHHCCCCeEEEeCCHHHHHHHHH-HHcCCCCEEEEEEeC
Confidence 0000 111110 0 1 1 233455555 556789999999883
No 86
>cd02001 TPP_ComE_PpyrDC Thiamine pyrophosphate (TPP) family, ComE and PpyrDC subfamily, TPP-binding module; composed of proteins similar to sulfopyruvate decarboxylase beta subunit (ComE) and phosphonopyruvate decarboxylase (Ppyr decarboxylase). Methanococcus jannaschii sulfopyruvate decarboxylase (ComDE) is a dodecamer of six alpha (D) subunits and six (E) beta subunits which, catalyzes the decarboxylation of sulfopyruvic acid to sulfoacetaldehyde in the coenzyme M pathway. Ppyr decarboxylase is a homotrimeric enzyme which functions in the biosynthesis of C-P compounds such as bialaphos tripeptide in Streptomyces hygroscopicus. Ppyr decarboxylase and ComDE require TPP and divalent metal cation cofactors.
Probab=96.47 E-value=0.004 Score=62.97 Aligned_cols=92 Identities=14% Similarity=0.163 Sum_probs=56.0
Q ss_pred CccccceeechhHHHHHhcCCCCCCceEEEEEecCcccC-CCchHHHhhh-ccCCCCCccccEEEEEEeCC-cccccCC-
Q 002323 366 LEAVDPVVVGKTRAKQYYSHDVDRTKNMGVLIHGDGSFA-GQGVVYETLH-LSALPNYTTGGTIHIVVNNQ-VAFTTDP- 441 (936)
Q Consensus 366 Leav~PVa~G~ArA~q~~~~d~~~~~~v~v~~hGDgA~s-GQGvv~EtLN-lA~LP~Y~~GGtIhIV~NNQ-igfTT~~- 441 (936)
+|...|.|+|++.|.+ .-+|++.|||+|. .-|.. +|+- +-++| +++||.||+ ||++-..
T Consensus 44 mG~~lp~AiGa~~a~~----------~~Vv~i~GDG~f~m~~~el-~t~~~~~~~~------i~~vV~nN~~~g~~~~~~ 106 (157)
T cd02001 44 MGLAGSIGLGLALGLS----------RKVIVVDGDGSLLMNPGVL-LTAGEFTPLN------LILVVLDNRAYGSTGGQP 106 (157)
T ss_pred hhhHHHHHHHHHhcCC----------CcEEEEECchHHHhcccHH-HHHHHhcCCC------EEEEEEeCccccccCCcC
Confidence 7888999999998852 2368999999993 13333 3332 22599 999998877 3543210
Q ss_pred CCCCCcchhh---------------HHHHHHHHHHHHHHHccCCCEEEEEEe
Q 002323 442 RAGRSSQYCT---------------DAVVHVCELAAEWRQKFHSDVVVDLVC 478 (936)
Q Consensus 442 ~~~rss~y~t---------------DAV~~a~~~A~e~rr~f~~pvlIdlv~ 478 (936)
.......|.. +++..+.+.|+ +.++|+|||+.+
T Consensus 107 ~~~~~~d~~~lA~a~G~~~~~v~~~~el~~al~~a~----~~~gp~vi~v~i 154 (157)
T cd02001 107 TPSSNVNLEAWAAACGYLVLSAPLLGGLGSEFAGLL----ATTGPTLLHAPI 154 (157)
T ss_pred CCCCCCCHHHHHHHCCCceEEcCCHHHHHHHHHHHH----hCCCCEEEEEEe
Confidence 0000111211 15555555554 457899999987
No 87
>PRK11269 glyoxylate carboligase; Provisional
Probab=96.44 E-value=0.0016 Score=78.65 Aligned_cols=57 Identities=30% Similarity=0.336 Sum_probs=41.0
Q ss_pred CCCccccceeechhHHHHHhcCCCCCCceEEEEEecCcccCCCchHHH--hhhccCCCCCccccEEEEEEeCC-ccc
Q 002323 364 SHLEAVDPVVVGKTRAKQYYSHDVDRTKNMGVLIHGDGSFAGQGVVYE--TLHLSALPNYTTGGTIHIVVNNQ-VAF 437 (936)
Q Consensus 364 SHLeav~PVa~G~ArA~q~~~~d~~~~~~v~v~~hGDgA~sGQGvv~E--tLNlA~LP~Y~~GGtIhIV~NNQ-igf 437 (936)
..+|...|-|+|++.|.. + .-+|++.|||+|- -. ..| |..--+|| +++||.||+ ||+
T Consensus 419 G~mG~glpaAiGa~la~p----~-----r~Vv~i~GDG~f~-m~-~~eL~Ta~~~~lp------v~~vV~NN~~~g~ 478 (591)
T PRK11269 419 GPLGWTIPAALGVRAADP----D-----RNVVALSGDYDFQ-FL-IEELAVGAQFNLP------YIHVLVNNAYLGL 478 (591)
T ss_pred ccccchhhhHHhhhhhCC----C-----CcEEEEEccchhh-cC-HHHHHHHHHhCCC------eEEEEEeCCchhH
Confidence 347888899999998853 2 3589999999995 21 233 22222999 999999999 553
No 88
>PRK07064 hypothetical protein; Provisional
Probab=96.36 E-value=0.0048 Score=73.71 Aligned_cols=57 Identities=14% Similarity=0.121 Sum_probs=41.4
Q ss_pred CCCccccceeechhHHHHHhcCCCCCCceEEEEEecCcccCCCchHHHhhhcc--CCCCCccccEEEEEEeCC-ccc
Q 002323 364 SHLEAVDPVVVGKTRAKQYYSHDVDRTKNMGVLIHGDGSFAGQGVVYETLHLS--ALPNYTTGGTIHIVVNNQ-VAF 437 (936)
Q Consensus 364 SHLeav~PVa~G~ArA~q~~~~d~~~~~~v~v~~hGDgA~sGQGvv~EtLNlA--~LP~Y~~GGtIhIV~NNQ-igf 437 (936)
+.+|...|-++|++.|.. + .-+|++.|||+|. =...|=...+ +|| +++||.||+ ||+
T Consensus 405 g~mG~~lpaAiGa~lA~p----~-----~~vv~i~GDGsf~--m~~~eL~Ta~~~~lp------v~ivV~NN~~yg~ 464 (544)
T PRK07064 405 GGIGQGLAMAIGAALAGP----G-----RKTVGLVGDGGLM--LNLGELATAVQENAN------MVIVLMNDGGYGV 464 (544)
T ss_pred CccccccchhhhhhhhCc----C-----CcEEEEEcchHhh--hhHHHHHHHHHhCCC------eEEEEEeCChhHH
Confidence 558889999999998852 2 3579999999995 2223333333 899 999988887 554
No 89
>PRK07710 acetolactate synthase catalytic subunit; Reviewed
Probab=96.36 E-value=0.0057 Score=73.70 Aligned_cols=99 Identities=20% Similarity=0.267 Sum_probs=63.7
Q ss_pred CCCccccceeechhHHHHHhcCCCCCCceEEEEEecCcccCCCchHHHhhhcc---CCCCCccccEEEEEEeCC-ccccc
Q 002323 364 SHLEAVDPVVVGKTRAKQYYSHDVDRTKNMGVLIHGDGSFAGQGVVYETLHLS---ALPNYTTGGTIHIVVNNQ-VAFTT 439 (936)
Q Consensus 364 SHLeav~PVa~G~ArA~q~~~~d~~~~~~v~v~~hGDgA~sGQGvv~EtLNlA---~LP~Y~~GGtIhIV~NNQ-igfTT 439 (936)
..+|...|-++|++.|.. + .-+|++.|||||. =.++| |..+ +|| +++||.||+ ||+--
T Consensus 424 g~mG~glpaAiGaala~p----~-----~~vv~i~GDGsf~--m~~~e-L~ta~r~~lp------i~ivV~NN~~~~~i~ 485 (571)
T PRK07710 424 GTMGFGLPAAIGAQLAKP----D-----ETVVAIVGDGGFQ--MTLQE-LSVIKELSLP------VKVVILNNEALGMVR 485 (571)
T ss_pred ccccchHHHHHHHHHhCC----C-----CcEEEEEcchHHh--hhHHH-HHHHHHhCCC------eEEEEEECchHHHHH
Confidence 457888899999998852 2 4578999999995 45566 4444 999 999999998 44311
Q ss_pred ---------CC--CCC-CCcchhh--H---------HHHHHHHHHHHHHHccCCCEEEEEEeee
Q 002323 440 ---------DP--RAG-RSSQYCT--D---------AVVHVCELAAEWRQKFHSDVVVDLVCYR 480 (936)
Q Consensus 440 ---------~~--~~~-rss~y~t--D---------AV~~a~~~A~e~rr~f~~pvlIdlv~YR 480 (936)
.. .+. ....|.. . .-.+..+.|++.+.+.++|+|||+.+-+
T Consensus 486 ~~~~~~~~~~~~~~~~~~~~d~~~~A~a~G~~~~~v~~~~el~~al~~a~~~~~p~lieV~vd~ 549 (571)
T PRK07710 486 QWQEEFYNQRYSHSLLSCQPDFVKLAEAYGIKGVRIDDELEAKEQLQHAIELQEPVVIDCRVLQ 549 (571)
T ss_pred HHHHHHhCCcceeccCCCCCCHHHHHHHCCCeEEEECCHHHHHHHHHHHHhCCCCEEEEEEecC
Confidence 00 000 0112221 0 1233445666666678899999999954
No 90
>PRK09124 pyruvate dehydrogenase; Provisional
Probab=96.35 E-value=0.0023 Score=77.05 Aligned_cols=57 Identities=28% Similarity=0.451 Sum_probs=40.1
Q ss_pred CCccccceeechhHHHHHhcCCCCCCceEEEEEecCcccCCCchHHHhhhcc--CCCCCccccEEEEEEeCC-cccc
Q 002323 365 HLEAVDPVVVGKTRAKQYYSHDVDRTKNMGVLIHGDGSFAGQGVVYETLHLS--ALPNYTTGGTIHIVVNNQ-VAFT 438 (936)
Q Consensus 365 HLeav~PVa~G~ArA~q~~~~d~~~~~~v~v~~hGDgA~sGQGvv~EtLNlA--~LP~Y~~GGtIhIV~NNQ-igfT 438 (936)
.+|...|-++|++.|.. + .=+|++.|||+|. =.+.|=.... +|| +++||.||+ ||+.
T Consensus 409 ~mG~~lpaAiGa~la~p----~-----r~vv~i~GDGsf~--m~~~eL~Ta~~~~lp------v~ivV~NN~~~g~i 468 (574)
T PRK09124 409 SMANAMPQALGAQAAHP----G-----RQVVALSGDGGFS--MLMGDFLSLVQLKLP------VKIVVFNNSVLGFV 468 (574)
T ss_pred cccchHHHHHHHHHhCC----C-----CeEEEEecCcHHh--ccHHHHHHHHHhCCC------eEEEEEeCCccccH
Confidence 36777888888888753 2 3478999999994 2234433333 999 999999887 6654
No 91
>PRK06154 hypothetical protein; Provisional
Probab=96.32 E-value=0.003 Score=76.11 Aligned_cols=96 Identities=17% Similarity=0.204 Sum_probs=59.3
Q ss_pred CCccccceeechhHHHHHhcCCCCCCceEEEEEecCcccCCCchHHHhhhcc--CCCCCccccEEEEEEeCC-cccccCC
Q 002323 365 HLEAVDPVVVGKTRAKQYYSHDVDRTKNMGVLIHGDGSFAGQGVVYETLHLS--ALPNYTTGGTIHIVVNNQ-VAFTTDP 441 (936)
Q Consensus 365 HLeav~PVa~G~ArA~q~~~~d~~~~~~v~v~~hGDgA~sGQGvv~EtLNlA--~LP~Y~~GGtIhIV~NNQ-igfTT~~ 441 (936)
.+|...|-++|++.|.. + .-+|++.|||+|. -. +.|=..+. +|| +++||.||+ ||+--..
T Consensus 432 smG~glpaaiGa~la~p----~-----r~Vv~i~GDG~f~-m~-~~EL~Ta~r~~lp------i~~vV~NN~~yg~~~~~ 494 (565)
T PRK06154 432 QLGYGLGLAMGAKLARP----D-----ALVINLWGDAAFG-MT-GMDFETAVRERIP------ILTILLNNFSMGGYDKV 494 (565)
T ss_pred ccccHHHHHHHHHHhCC----C-----CcEEEEEcchHHh-cc-HHHHHHHHHhCCC------eEEEEEECCccceeehh
Confidence 37778888888888752 2 4689999999996 32 23322233 999 999999998 5532110
Q ss_pred C---CC--C----Ccchhh---------------HHHHHHHHHHHHHHHccCCCEEEEEEe
Q 002323 442 R---AG--R----SSQYCT---------------DAVVHVCELAAEWRQKFHSDVVVDLVC 478 (936)
Q Consensus 442 ~---~~--r----ss~y~t---------------DAV~~a~~~A~e~rr~f~~pvlIdlv~ 478 (936)
. .. . ...|+. +....|.+.|+++.+ .++|+|||+++
T Consensus 495 ~~~~~~~~~~~~~~~df~~lA~a~G~~g~~V~~~~el~~al~~a~~~~~-~~~p~lIev~v 554 (565)
T PRK06154 495 MPVSTTKYRATDISGDYAAIARALGGYGERVEDPEMLVPALLRALRKVK-EGTPALLEVIT 554 (565)
T ss_pred hhhhcCcccccCCCCCHHHHHHHCCCeEEEECCHHHHHHHHHHHHhhcc-CCCeEEEEEEe
Confidence 0 00 0 012221 155556666665432 57899999987
No 92
>TIGR01504 glyox_carbo_lig glyoxylate carboligase. Glyoxylate carboligase, also called tartronate-semialdehyde synthase, releases CO2 while synthesizing a single molecule of tartronate semialdehyde from two molecules of glyoxylate. It is a thiamine pyrophosphate-dependent enzyme, closely related in sequence to the large subunit of acetolactate synthase. In the D-glycerate pathway, part of allantoin degradation in the Enterobacteriaceae, tartronate semialdehyde is converted to D-glycerate and then 3-phosphoglycerate, a product of glycolysis and entry point in the general metabolism.
Probab=96.28 E-value=0.0055 Score=74.20 Aligned_cols=57 Identities=26% Similarity=0.318 Sum_probs=41.0
Q ss_pred CCCccccceeechhHHHHHhcCCCCCCceEEEEEecCcccCCCchHHHhhhcc--CCCCCccccEEEEEEeCC-ccc
Q 002323 364 SHLEAVDPVVVGKTRAKQYYSHDVDRTKNMGVLIHGDGSFAGQGVVYETLHLS--ALPNYTTGGTIHIVVNNQ-VAF 437 (936)
Q Consensus 364 SHLeav~PVa~G~ArA~q~~~~d~~~~~~v~v~~hGDgA~sGQGvv~EtLNlA--~LP~Y~~GGtIhIV~NNQ-igf 437 (936)
..+|...|-++|++.|.. + .-+|++.|||+|. -. ..|=.... +|| +++||.||. ||+
T Consensus 418 gsmG~glpaaiGa~lA~p----d-----r~Vv~i~GDG~f~-m~-~~EL~Ta~r~~lp------vv~iV~NN~~yg~ 477 (588)
T TIGR01504 418 GPLGWTIPAALGVCAADP----K-----RNVVALSGDYDFQ-FM-IEELAVGAQHNIP------YIHVLVNNAYLGL 477 (588)
T ss_pred ccccchHhHHHhhhhhCC----C-----CcEEEEEcchHhh-cc-HHHHHHHHHhCCC------eEEEEEeCCchHH
Confidence 448888888999988853 2 3588999999996 22 23322222 999 999999997 664
No 93
>PRK06546 pyruvate dehydrogenase; Provisional
Probab=96.20 E-value=0.0066 Score=73.35 Aligned_cols=56 Identities=23% Similarity=0.388 Sum_probs=42.3
Q ss_pred CCccccceeechhHHHHHhcCCCCCCceEEEEEecCcccCCCchHHHhhhcc--CCCCCccccEEEEEEeCCc-cc
Q 002323 365 HLEAVDPVVVGKTRAKQYYSHDVDRTKNMGVLIHGDGSFAGQGVVYETLHLS--ALPNYTTGGTIHIVVNNQV-AF 437 (936)
Q Consensus 365 HLeav~PVa~G~ArA~q~~~~d~~~~~~v~v~~hGDgA~sGQGvv~EtLNlA--~LP~Y~~GGtIhIV~NNQi-gf 437 (936)
.+|...|.++|++.|.. + .-+|++.|||+|. - ...|-...+ +|| +++||.||+. |+
T Consensus 409 smG~~~paAiGa~la~p----~-----~~vv~i~GDGsf~-~-~~~el~Ta~~~~lp------v~~vV~NN~~~g~ 467 (578)
T PRK06546 409 SMANALPHAIGAQLADP----G-----RQVISMSGDGGLS-M-LLGELLTVKLYDLP------VKVVVFNNSTLGM 467 (578)
T ss_pred cccchhHHHHHHHHhCC----C-----CcEEEEEcCchHh-h-hHHHHHHHHHhCCC------eEEEEEECCcccc
Confidence 37888899999998853 2 4699999999995 3 345544333 999 9999999985 54
No 94
>PRK07525 sulfoacetaldehyde acetyltransferase; Validated
Probab=96.07 E-value=0.0054 Score=74.18 Aligned_cols=98 Identities=17% Similarity=0.233 Sum_probs=63.7
Q ss_pred CCCccccceeechhHHHHHhcCCCCCCceEEEEEecCcccCCCchHHHhhhcc--CCCCCccccEEEEEEeC-Cccccc-
Q 002323 364 SHLEAVDPVVVGKTRAKQYYSHDVDRTKNMGVLIHGDGSFAGQGVVYETLHLS--ALPNYTTGGTIHIVVNN-QVAFTT- 439 (936)
Q Consensus 364 SHLeav~PVa~G~ArA~q~~~~d~~~~~~v~v~~hGDgA~sGQGvv~EtLNlA--~LP~Y~~GGtIhIV~NN-QigfTT- 439 (936)
+.+|...|.++|++.|.. + .-+|++.|||+|. -+ ..|-.+.+ +|| +++||.|| .||+..
T Consensus 435 g~mG~glp~aiGa~la~p----~-----r~vv~i~GDG~f~-~~-~~el~Ta~~~~lp------v~ivV~NN~~y~~~~~ 497 (588)
T PRK07525 435 GNCGYAFPAIIGAKIACP----D-----RPVVGFAGDGAWG-IS-MNEVMTAVRHNWP------VTAVVFRNYQWGAEKK 497 (588)
T ss_pred cccccHHHHHHHHHHhCC----C-----CcEEEEEcCchHh-cc-HHHHHHHHHhCCC------eEEEEEeCchhHHHHH
Confidence 448888888999888742 2 4588999999996 54 57766655 999 99999888 566421
Q ss_pred --------CCC---CCCCcchhh---------------HHHHHHHHHHHHHHHccCCCEEEEEEee
Q 002323 440 --------DPR---AGRSSQYCT---------------DAVVHVCELAAEWRQKFHSDVVVDLVCY 479 (936)
Q Consensus 440 --------~~~---~~rss~y~t---------------DAV~~a~~~A~e~rr~f~~pvlIdlv~Y 479 (936)
+.. ......|+. ++...+.+.|++.. +.++|+|||+.+=
T Consensus 498 ~~~~~~~~~~~~~~~~~~~d~~~lA~a~G~~~~~v~~~~el~~al~~a~~~~-~~~~p~lIev~~~ 562 (588)
T PRK07525 498 NQVDFYNNRFVGTELDNNVSYAGIAEAMGAEGVVVDTQEELGPALKRAIDAQ-NEGKTTVIEIMCN 562 (588)
T ss_pred HHHHHhCCCcccccCCCCCCHHHHHHHCCCeEEEECCHHHHHHHHHHHHhcC-CCCCcEEEEEEec
Confidence 000 001112221 15556666666543 2468999999983
No 95
>cd02003 TPP_IolD Thiamine pyrophosphate (TPP) family, IolD subfamily, TPP-binding module; composed of proteins similar to Rhizobium leguminosarum bv. viciae IolD. IolD plays an important role in myo-inositol catabolism.
Probab=96.04 E-value=0.013 Score=61.72 Aligned_cols=55 Identities=22% Similarity=0.231 Sum_probs=38.7
Q ss_pred CccccceeechhHHHHHhcCCCCCCceEEEEEecCcccCCCchHHHhhhcc--CCCCCccccEEEEEEeCC-ccc
Q 002323 366 LEAVDPVVVGKTRAKQYYSHDVDRTKNMGVLIHGDGSFAGQGVVYETLHLS--ALPNYTTGGTIHIVVNNQ-VAF 437 (936)
Q Consensus 366 Leav~PVa~G~ArA~q~~~~d~~~~~~v~v~~hGDgA~sGQGvv~EtLNlA--~LP~Y~~GGtIhIV~NNQ-igf 437 (936)
+|...|-|+|++.|.. + .-+|++.|||+|. -+ ..|-...+ +|| +++||.||+ ||+
T Consensus 50 mG~~lpaAiGa~la~p----~-----~~vv~i~GDGsf~-m~-~~eL~Ta~~~~lp------v~ivV~NN~~~g~ 107 (205)
T cd02003 50 MGYEIAAGLGAKLAKP----D-----REVYVLVGDGSYL-ML-HSEIVTAVQEGLK------IIIVLFDNHGFGC 107 (205)
T ss_pred hhhHHHHHHHHHHhCC----C-----CeEEEEEccchhh-cc-HHHHHHHHHcCCC------CEEEEEECCccHH
Confidence 6777788888887742 2 4578999999996 43 34444444 899 988888886 453
No 96
>PRK12474 hypothetical protein; Provisional
Probab=96.00 E-value=0.0094 Score=70.99 Aligned_cols=57 Identities=21% Similarity=0.245 Sum_probs=42.7
Q ss_pred CCCccccceeechhHHHHHhcCCCCCCceEEEEEecCcccCCCchHHHhhhcc--CCCCCccccEEEEEEeCC-ccc
Q 002323 364 SHLEAVDPVVVGKTRAKQYYSHDVDRTKNMGVLIHGDGSFAGQGVVYETLHLS--ALPNYTTGGTIHIVVNNQ-VAF 437 (936)
Q Consensus 364 SHLeav~PVa~G~ArA~q~~~~d~~~~~~v~v~~hGDgA~sGQGvv~EtLNlA--~LP~Y~~GGtIhIV~NNQ-igf 437 (936)
..+|...|-|+|++.|.. + .-+|++.|||+|. =..+|=..++ +|| +++||.||+ ||+
T Consensus 389 gsmG~glpaAiGa~lA~p----~-----r~vv~i~GDG~f~--m~~qEL~Ta~r~~lp------v~iiV~NN~~y~~ 448 (518)
T PRK12474 389 GSIGQGLPLAAGAAVAAP----D-----RKVVCPQGDGGAA--YTMQALWTMARENLD------VTVVIFANRSYAI 448 (518)
T ss_pred CccCccHHHHHHHHHHCC----C-----CcEEEEEcCchhc--chHHHHHHHHHHCCC------cEEEEEcCCcchH
Confidence 668888899999988852 2 3478999999996 2234433333 999 999999998 665
No 97
>CHL00099 ilvB acetohydroxyacid synthase large subunit
Probab=95.97 E-value=0.0068 Score=73.34 Aligned_cols=54 Identities=26% Similarity=0.375 Sum_probs=39.9
Q ss_pred CCCccccceeechhHHHHHhcCCCCCCceEEEEEecCcccCCCchHHHhhhcc--CCCCCccccEEEEEEeCC
Q 002323 364 SHLEAVDPVVVGKTRAKQYYSHDVDRTKNMGVLIHGDGSFAGQGVVYETLHLS--ALPNYTTGGTIHIVVNNQ 434 (936)
Q Consensus 364 SHLeav~PVa~G~ArA~q~~~~d~~~~~~v~v~~hGDgA~sGQGvv~EtLNlA--~LP~Y~~GGtIhIV~NNQ 434 (936)
+.+|...|.++|++.|.. + .-+|++.|||+|. =...|=...+ +|| +++||.||+
T Consensus 430 g~mG~glpaaiGaala~p----~-----~~vv~i~GDG~f~--m~~~eL~Ta~~~~l~------~~~vV~NN~ 485 (585)
T CHL00099 430 GTMGYGLPAAIGAQIAHP----N-----ELVICISGDASFQ--MNLQELGTIAQYNLP------IKIIIINNK 485 (585)
T ss_pred cchhhhHHHHHHHHHhCC----C-----CeEEEEEcchhhh--hhHHHHHHHHHhCCC------eEEEEEECC
Confidence 458888899999998853 2 3588999999996 2222222222 999 999999999
No 98
>PRK07449 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate synthase; Validated
Probab=95.93 E-value=0.0084 Score=72.10 Aligned_cols=53 Identities=28% Similarity=0.352 Sum_probs=37.8
Q ss_pred CccccceeechhHHHHHhcCCCCCCceEEEEEecCcccCCCchHHHhhhcc--CCCCCccccEEEEEEeCC-cc
Q 002323 366 LEAVDPVVVGKTRAKQYYSHDVDRTKNMGVLIHGDGSFAGQGVVYETLHLS--ALPNYTTGGTIHIVVNNQ-VA 436 (936)
Q Consensus 366 Leav~PVa~G~ArA~q~~~~d~~~~~~v~v~~hGDgA~sGQGvv~EtLNlA--~LP~Y~~GGtIhIV~NNQ-ig 436 (936)
+|...|-++|++.| . + .-+|++.|||||- .. ..|=...+ +|| +++||.||+ ||
T Consensus 427 ~G~~lpaaiGaala-~----~-----~~vv~i~GDGsf~-~~-~~eL~Ta~r~~l~------i~ivVlNN~g~~ 482 (568)
T PRK07449 427 IDGLLSTAAGVARA-S----A-----KPTVALIGDLSFL-HD-LNGLLLLKQVPAP------LTIVVVNNNGGG 482 (568)
T ss_pred hhhHHHHHHHHHhc-C----C-----CCEEEEechHHhh-cC-cHHHHhhcccCCC------eEEEEEECCCCc
Confidence 66677888898887 2 2 2368999999996 43 23333333 999 999999998 45
No 99
>PRK11869 2-oxoacid ferredoxin oxidoreductase subunit beta; Provisional
Probab=95.91 E-value=0.0099 Score=65.88 Aligned_cols=56 Identities=20% Similarity=0.165 Sum_probs=43.5
Q ss_pred CccccceeechhHHHHHhcCCCCCCceEEEEEecCcccCCCch-HHHhhhcc--CCCCCccccEEEEEEeCCc-ccc
Q 002323 366 LEAVDPVVVGKTRAKQYYSHDVDRTKNMGVLIHGDGSFAGQGV-VYETLHLS--ALPNYTTGGTIHIVVNNQV-AFT 438 (936)
Q Consensus 366 Leav~PVa~G~ArA~q~~~~d~~~~~~v~v~~hGDgA~sGQGv-v~EtLNlA--~LP~Y~~GGtIhIV~NNQi-gfT 438 (936)
+|...|.|+|+..|.. + .-+|++.|||++ ... +.|-...+ ++| +++||.||+. |+|
T Consensus 62 mG~alp~AiGaklA~p----d-----~~VVai~GDG~~--~~iG~~eL~tA~r~nl~------i~~IV~NN~~Yg~t 121 (280)
T PRK11869 62 HGRAIPAATAVKATNP----E-----LTVIAEGGDGDM--YAEGGNHLIHAIRRNPD------ITVLVHNNQVYGLT 121 (280)
T ss_pred cccHHHHHHHHHHHCC----C-----CcEEEEECchHH--hhCcHHHHHHHHHhCcC------cEEEEEECHHHhhh
Confidence 6788899999977732 2 457999999997 444 67777777 999 9999999983 654
No 100
>TIGR03297 Ppyr-DeCO2ase phosphonopyruvate decarboxylase. This family consists of examples of phosphonopyruvate an decarboxylase enzyme that produces phosphonoacetaldehyde (Pald), the second step in the biosynthesis phosphonate-containing compounds. Since the preceding enzymate step, PEP phosphomutase (AepX, TIGR02320) favors the substrate PEP energetically, the decarboxylase is required to drive the reaction in the direction of phosphonate production. Pald is a precursor of natural products including antibiotics like bialaphos and phosphonothricin in Streptomyces species, phosphonate-modified molecules such as the polysaccharide B of Bacteroides fragilis, the phosphonolipids of Tetrahymena pyroformis, the glycosylinositolphospholipids of Trypanosoma cruzi. This gene generally occurs in prokaryotic organisms adjacent to the gene for AepX. Most often an aminotansferase (aepZ) is also present which leads to the production of the most common phosphonate compound, 2-aminoethylphosphonate (A
Probab=95.87 E-value=0.018 Score=65.96 Aligned_cols=96 Identities=15% Similarity=0.226 Sum_probs=56.2
Q ss_pred CCCccccceeechhHHHHHhcCCCCCCceEEEEEecCcccCC-CchHHHhhhccC-CCCCccccEEEEEEeCCc-ccccC
Q 002323 364 SHLEAVDPVVVGKTRAKQYYSHDVDRTKNMGVLIHGDGSFAG-QGVVYETLHLSA-LPNYTTGGTIHIVVNNQV-AFTTD 440 (936)
Q Consensus 364 SHLeav~PVa~G~ArA~q~~~~d~~~~~~v~v~~hGDgA~sG-QGvv~EtLNlA~-LP~Y~~GGtIhIV~NNQi-gfTT~ 440 (936)
+.+|...|.|+|++.|... .=+||+.|||||-= -|.+ +++--.+ .| ++|||.||+. +.+-.
T Consensus 221 GsMG~a~p~AlG~ala~p~---------r~Vv~i~GDGsflm~~~eL-~t~~~~~~~n------li~VVlNNg~~~~~g~ 284 (361)
T TIGR03297 221 GSMGHASQIALGLALARPD---------QRVVCLDGDGAALMHMGGL-ATIGTQGPAN------LIHVLFNNGAHDSVGG 284 (361)
T ss_pred chhhhHHHHHHHHHHHCCC---------CCEEEEEChHHHHHHHHHH-HHHHHhCCCC------eEEEEEcCccccccCC
Confidence 4488888999999988642 34899999999930 1221 2221114 47 9999999985 42211
Q ss_pred -CCCCCCcchhh----------------HHHHHHHHHHHHHHHccCCCEEEEEEee
Q 002323 441 -PRAGRSSQYCT----------------DAVVHVCELAAEWRQKFHSDVVVDLVCY 479 (936)
Q Consensus 441 -~~~~rss~y~t----------------DAV~~a~~~A~e~rr~f~~pvlIdlv~Y 479 (936)
+..+....|.. +.+..|.+.| .+.++|+|||+.+-
T Consensus 285 q~~~~~~~d~~~iA~a~G~~~~~~v~~~~eL~~al~~a----~~~~gp~lIeV~v~ 336 (361)
T TIGR03297 285 QPTVSQHLDFAQIAKACGYAKVYEVSTLEELETALTAA----SSANGPRLIEVKVR 336 (361)
T ss_pred cCCCCCCCCHHHHHHHCCCceEEEeCCHHHHHHHHHHH----HhCCCcEEEEEEec
Confidence 00000111110 1444444444 45688999999983
No 101
>TIGR00118 acolac_lg acetolactate synthase, large subunit, biosynthetic type. Several isozymes of this enzyme are found in E. coli K12, one of which contains a frameshift in the large subunit gene and is not expressed.
Probab=95.81 E-value=0.0098 Score=71.40 Aligned_cols=54 Identities=26% Similarity=0.370 Sum_probs=40.4
Q ss_pred CccccceeechhHHHHHhcCCCCCCceEEEEEecCcccCCCchHHHhhhcc--CCCCCccccEEEEEEeCCcc
Q 002323 366 LEAVDPVVVGKTRAKQYYSHDVDRTKNMGVLIHGDGSFAGQGVVYETLHLS--ALPNYTTGGTIHIVVNNQVA 436 (936)
Q Consensus 366 Leav~PVa~G~ArA~q~~~~d~~~~~~v~v~~hGDgA~sGQGvv~EtLNlA--~LP~Y~~GGtIhIV~NNQig 436 (936)
+|...|.++|++.|.. + .-+|++.|||+|. . .+.|-..++ +|| +++||.||+.-
T Consensus 414 mG~~l~aaiGa~la~~----~-----~~vv~~~GDG~f~-~-~~~eL~ta~~~~l~------~~~vv~NN~~~ 469 (558)
T TIGR00118 414 MGFGLPAAIGAKVAKP----E-----STVICITGDGSFQ-M-NLQELSTAVQYDIP------VKILILNNRYL 469 (558)
T ss_pred ccchhhHHHhhhhhCC----C-----CcEEEEEcchHHh-c-cHHHHHHHHHhCCC------eEEEEEeCCch
Confidence 7778889999887742 2 4579999999997 5 344433333 999 99999999853
No 102
>PRK07586 hypothetical protein; Validated
Probab=95.80 E-value=0.0077 Score=71.51 Aligned_cols=57 Identities=19% Similarity=0.243 Sum_probs=41.4
Q ss_pred CCCccccceeechhHHHHHhcCCCCCCceEEEEEecCcccCCCchHHHhhhcc--CCCCCccccEEEEEEeCC-ccc
Q 002323 364 SHLEAVDPVVVGKTRAKQYYSHDVDRTKNMGVLIHGDGSFAGQGVVYETLHLS--ALPNYTTGGTIHIVVNNQ-VAF 437 (936)
Q Consensus 364 SHLeav~PVa~G~ArA~q~~~~d~~~~~~v~v~~hGDgA~sGQGvv~EtLNlA--~LP~Y~~GGtIhIV~NNQ-igf 437 (936)
..+|...|-++|++.|.. + .-+|++.|||+|. -. .+|=-... +|| +++||.||+ ||+
T Consensus 385 g~mG~~lpaaiGa~lA~p----~-----r~Vv~i~GDGsf~-m~-~~EL~Ta~~~~lp------v~ivV~NN~~y~~ 444 (514)
T PRK07586 385 GAIGQGLPLATGAAVACP----D-----RKVLALQGDGSAM-YT-IQALWTQARENLD------VTTVIFANRAYAI 444 (514)
T ss_pred cccccHHHHHHHHHHhCC----C-----CeEEEEEechHHH-hH-HHHHHHHHHcCCC------CEEEEEeCchhHH
Confidence 558888888889888852 2 4689999999996 22 23333333 999 999998887 664
No 103
>PRK06456 acetolactate synthase catalytic subunit; Reviewed
Probab=95.67 E-value=0.011 Score=71.16 Aligned_cols=100 Identities=17% Similarity=0.196 Sum_probs=61.0
Q ss_pred CCCccccceeechhHHHHHhcCCCCCCceEEEEEecCcccCCCchHHHhhhcc--CCCCCccccEEEEEEeCC-cccccC
Q 002323 364 SHLEAVDPVVVGKTRAKQYYSHDVDRTKNMGVLIHGDGSFAGQGVVYETLHLS--ALPNYTTGGTIHIVVNNQ-VAFTTD 440 (936)
Q Consensus 364 SHLeav~PVa~G~ArA~q~~~~d~~~~~~v~v~~hGDgA~sGQGvv~EtLNlA--~LP~Y~~GGtIhIV~NNQ-igfTT~ 440 (936)
+.+|...|-++|++.|.. + .-+|++.|||+|- =...|=..+. +|| +++||.||+ ||+...
T Consensus 421 g~mG~glpaAiGa~la~p----~-----~~vv~i~GDG~f~--m~~~eL~Ta~~~~l~------i~ivV~NN~~yg~i~~ 483 (572)
T PRK06456 421 GTMGFGLPAAMGAKLARP----D-----KVVVDLDGDGSFL--MTGTNLATAVDEHIP------VISVIFDNRTLGLVRQ 483 (572)
T ss_pred ccccchhHHHHHHHHhCC----C-----CeEEEEEccchHh--cchHHHHHHHHhCCC------eEEEEEECCchHHHHH
Confidence 458888899999888853 2 4688999999996 1122222222 999 999999998 554321
Q ss_pred C------CCC------CCcchhh-------H----HHHHHHHHHHHHHHccCCCEEEEEEeee
Q 002323 441 P------RAG------RSSQYCT-------D----AVVHVCELAAEWRQKFHSDVVVDLVCYR 480 (936)
Q Consensus 441 ~------~~~------rss~y~t-------D----AV~~a~~~A~e~rr~f~~pvlIdlv~YR 480 (936)
. ... ....|.. . .-....+.|++.+.+-++|+|||+.+-+
T Consensus 484 ~q~~~~~~~~~~~~~~~~~d~~~~A~a~G~~~~~v~~~~eL~~al~~a~~~~~p~lIev~v~~ 546 (572)
T PRK06456 484 VQDLFFGKRIVGVDYGPSPDFVKLAEAFGALGFNVTTYEDIEKSLKSAIKEDIPAVIRVPVDK 546 (572)
T ss_pred HHHHhhCCCcccccCCCCCCHHHHHHHCCCeeEEeCCHHHHHHHHHHHHhCCCCEEEEEEeCc
Confidence 0 000 0111210 0 1123345555556667899999999854
No 104
>PRK08199 thiamine pyrophosphate protein; Validated
Probab=95.66 E-value=0.017 Score=69.39 Aligned_cols=97 Identities=20% Similarity=0.192 Sum_probs=58.2
Q ss_pred CCccccceeechhHHHHHhcCCCCCCceEEEEEecCcccCCCchHHHhhhcc---CCCCCccccEEEEEEeCC-ccccc-
Q 002323 365 HLEAVDPVVVGKTRAKQYYSHDVDRTKNMGVLIHGDGSFAGQGVVYETLHLS---ALPNYTTGGTIHIVVNNQ-VAFTT- 439 (936)
Q Consensus 365 HLeav~PVa~G~ArA~q~~~~d~~~~~~v~v~~hGDgA~sGQGvv~EtLNlA---~LP~Y~~GGtIhIV~NNQ-igfTT- 439 (936)
.+|...|.++|++.|. .+ .-+|++.|||+|. -. ..| |..+ +|| +++||.||. ||+.-
T Consensus 416 ~mG~glpaaiGa~la~----p~-----~~vv~i~GDGsf~-~~-~~e-l~ta~~~~l~------i~~vv~nN~~~~~~~~ 477 (557)
T PRK08199 416 SMGYGLPAAIAAKLLF----PE-----RTVVAFAGDGCFL-MN-GQE-LATAVQYGLP------IIVIVVNNGMYGTIRM 477 (557)
T ss_pred cccchHHHHHHHHHhC----CC-----CcEEEEEcchHhh-cc-HHH-HHHHHHhCCC------eEEEEEeCCcchHHHH
Confidence 3666677777777663 22 4689999999985 22 133 3333 999 999999999 56432
Q ss_pred CCCC---C-------CCcchhh--H---------HHHHHHHHHHHHHHccCCCEEEEEEee
Q 002323 440 DPRA---G-------RSSQYCT--D---------AVVHVCELAAEWRQKFHSDVVVDLVCY 479 (936)
Q Consensus 440 ~~~~---~-------rss~y~t--D---------AV~~a~~~A~e~rr~f~~pvlIdlv~Y 479 (936)
.... . ....|.. . .-.+..+.|++.+.+.++|+|||+.+=
T Consensus 478 ~~~~~~~~~~~~~~~~~~d~~~~a~a~G~~~~~v~~~~el~~al~~a~~~~gp~li~v~~~ 538 (557)
T PRK08199 478 HQEREYPGRVSGTDLTNPDFAALARAYGGHGETVERTEDFAPAFERALASGKPALIEIRID 538 (557)
T ss_pred HHHHhcCCccccccCCCCCHHHHHHHCCCeEEEeCCHHHHHHHHHHHHhCCCCEEEEEEeC
Confidence 1000 0 0011210 0 123344555555566789999999983
No 105
>TIGR02720 pyruv_oxi_spxB pyruvate oxidase. Members of this family are examples of pyruvate oxidase (EC 1.2.3.3), an enzyme with FAD and TPP as cofactors that catalyzes the reaction pyruvate + phosphate + O2 + H2O = acetyl phosphate + CO2 + H2O2. It should not be confused with pyruvate dehydrogenase [cytochrome] (EC 1.2.2.2) as in E. coli PoxB, although the E. coli enzyme is closely homologous and has pyruvate oxidase as an alternate name.
Probab=95.66 E-value=0.011 Score=71.32 Aligned_cols=95 Identities=22% Similarity=0.300 Sum_probs=57.4
Q ss_pred CCccccceeechhHHHHHhcCCCCCCceEEEEEecCcccCCCchHHHhhhcc--CCCCCccccEEEEEEeCC-ccccc--
Q 002323 365 HLEAVDPVVVGKTRAKQYYSHDVDRTKNMGVLIHGDGSFAGQGVVYETLHLS--ALPNYTTGGTIHIVVNNQ-VAFTT-- 439 (936)
Q Consensus 365 HLeav~PVa~G~ArA~q~~~~d~~~~~~v~v~~hGDgA~sGQGvv~EtLNlA--~LP~Y~~GGtIhIV~NNQ-igfTT-- 439 (936)
.+|...|-++|++.|.. + .-+|++.|||+|. -. ..|=..++ +|| +++||.||+ ||+.-
T Consensus 409 smG~glpaAiGa~la~p----~-----r~Vv~i~GDGsf~-m~-~~eL~Tavr~~lp------i~~VV~NN~~yg~i~~~ 471 (575)
T TIGR02720 409 TMGVGVPGAIAAKLNYP----D-----RQVFNLAGDGAFS-MT-MQDLLTQVQYHLP------VINIVFSNCTYGFIKDE 471 (575)
T ss_pred hhhchHHHHHHHHHhCC----C-----CcEEEEEcccHHH-hh-HHHHHHHHHhCCC------eEEEEEeCCccHHHHHH
Confidence 36677777777766632 2 4679999999996 33 34433333 999 999988777 77531
Q ss_pred ----CC-CCC---CCcchhh---------------HHHHHHHHHHHHHHHccCCCEEEEEEe
Q 002323 440 ----DP-RAG---RSSQYCT---------------DAVVHVCELAAEWRQKFHSDVVVDLVC 478 (936)
Q Consensus 440 ----~~-~~~---rss~y~t---------------DAV~~a~~~A~e~rr~f~~pvlIdlv~ 478 (936)
.. ... ....|.. |....+.+.|++ . +.++|+|||+++
T Consensus 472 ~~~~~~~~~~~~~~~~df~~iA~a~G~~~~~v~~~~el~~al~~a~~-~-~~~~p~liev~i 531 (575)
T TIGR02720 472 QEDTNQPLIGVDFNDADFAKIAEGVGAVGFRVNKIEQLPAVFEQAKA-I-KQGKPVLIDAKI 531 (575)
T ss_pred HHHhCCCcccccCCCCCHHHHHHHCCCEEEEeCCHHHHHHHHHHHHh-h-CCCCcEEEEEEe
Confidence 10 000 0011110 155555555554 2 568999999988
No 106
>TIGR02418 acolac_catab acetolactate synthase, catabolic. Acetolactate synthase (EC 2.2.1.6) combines two molecules of pyruvate to yield 2-acetolactate with the release of CO2. This reaction may be involved in either valine biosynthesis (biosynthetic) or conversion of pyruvate to acetoin and possibly to 2,3-butanediol (catabolic). The biosynthetic type, described by TIGR00118, is also capable of forming acetohydroxybutyrate from pyruvate and 2-oxobutyrate for isoleucine biosynthesis. The family described here, part of the same larger family of thiamine pyrophosphate-dependent enzymes (pfam00205, pfam02776) is the catabolic form, generally found associated with in species with acetolactate decarboxylase and usually found in the same operon. The model may not encompass all catabolic acetolactate synthases, but rather one particular clade in the larger TPP-dependent enzyme family.
Probab=95.57 E-value=0.0075 Score=72.11 Aligned_cols=100 Identities=18% Similarity=0.196 Sum_probs=60.8
Q ss_pred CCCccccceeechhHHHHHhcCCCCCCceEEEEEecCcccCCCchHHHhhhcc--CCCCCccccEEEEEEeCC-cccccC
Q 002323 364 SHLEAVDPVVVGKTRAKQYYSHDVDRTKNMGVLIHGDGSFAGQGVVYETLHLS--ALPNYTTGGTIHIVVNNQ-VAFTTD 440 (936)
Q Consensus 364 SHLeav~PVa~G~ArA~q~~~~d~~~~~~v~v~~hGDgA~sGQGvv~EtLNlA--~LP~Y~~GGtIhIV~NNQ-igfTT~ 440 (936)
..+|...|-++|++.|.. + .-+|++.|||+|. =..+|=...+ +|| +++||.||. ||+--.
T Consensus 408 g~mG~~lpaaiGa~la~~----~-----~~vv~i~GDGsf~--m~~~eL~Ta~~~~lp------i~ivV~NN~~y~~~~~ 470 (539)
T TIGR02418 408 QTLGVALPWAIGAALVRP----N-----TKVVSVSGDGGFL--FSSMELETAVRLKLN------IVHIIWNDNGYNMVEF 470 (539)
T ss_pred cccccHHHHHHHHHHhCC----C-----CcEEEEEcchhhh--chHHHHHHHHHhCCC------eEEEEEECCcchHHHH
Confidence 357888899999888853 2 3488999999995 3445544434 999 999999986 343210
Q ss_pred -----CCCCC-----Ccchhh--H---------HHHHHHHHHHHHHHccCCCEEEEEEeee
Q 002323 441 -----PRAGR-----SSQYCT--D---------AVVHVCELAAEWRQKFHSDVVVDLVCYR 480 (936)
Q Consensus 441 -----~~~~r-----ss~y~t--D---------AV~~a~~~A~e~rr~f~~pvlIdlv~YR 480 (936)
..... ...|.. . .-..-.+.|++.+.+.++|+|||+.+-+
T Consensus 471 ~~~~~~~~~~~~~~~~~d~~~lA~a~G~~~~~V~~~~eL~~al~~a~~~~~p~lIev~v~~ 531 (539)
T TIGR02418 471 QEEMKYQRSSGVDFGPIDFVKYAESFGAKGLRVESPDQLEPTLRQAMEVEGPVVVDIPVDY 531 (539)
T ss_pred HHHHhcCCcccccCCCCCHHHHHHHCCCeEEEECCHHHHHHHHHHHHhCCCCEEEEEEecC
Confidence 00000 111211 0 1122234555555567899999999843
No 107
>PRK06466 acetolactate synthase 3 catalytic subunit; Validated
Probab=95.52 E-value=0.0067 Score=73.17 Aligned_cols=56 Identities=23% Similarity=0.242 Sum_probs=39.1
Q ss_pred CCCccccceeechhHHHHHhcCCCCCCceEEEEEecCcccCCCchHHHhhhcc--CCCCCccccEEEEEEeCC-cc
Q 002323 364 SHLEAVDPVVVGKTRAKQYYSHDVDRTKNMGVLIHGDGSFAGQGVVYETLHLS--ALPNYTTGGTIHIVVNNQ-VA 436 (936)
Q Consensus 364 SHLeav~PVa~G~ArA~q~~~~d~~~~~~v~v~~hGDgA~sGQGvv~EtLNlA--~LP~Y~~GGtIhIV~NNQ-ig 436 (936)
+.+|...|-++|++.|.. + .-+|++.|||+|. -. ..|=.... +|| +++||.||. ||
T Consensus 423 gsmG~glpaAiGa~la~p----~-----r~Vv~i~GDG~f~-m~-~~eL~Ta~r~~lp------v~ivV~NN~~y~ 481 (574)
T PRK06466 423 GTMGFGLPAAMGVKLAFP----D-----QDVACVTGEGSIQ-MN-IQELSTCLQYGLP------VKIINLNNGALG 481 (574)
T ss_pred chhhchHHHHHHHHHhCC----C-----CeEEEEEcchhhh-cc-HHHHHHHHHhCCC------eEEEEEeCCccH
Confidence 347888888999888853 2 3479999999996 22 22222222 999 999999996 44
No 108
>PRK09628 oorB 2-oxoglutarate-acceptor oxidoreductase subunit OorB; Reviewed
Probab=95.51 E-value=0.021 Score=63.24 Aligned_cols=57 Identities=21% Similarity=0.198 Sum_probs=42.6
Q ss_pred CccccceeechhHHHHHhcCCCCCCceEEEEEecCcccCCCchHHHhhhcc--CCCCCccccEEEEEEeCCc-ccc
Q 002323 366 LEAVDPVVVGKTRAKQYYSHDVDRTKNMGVLIHGDGSFAGQGVVYETLHLS--ALPNYTTGGTIHIVVNNQV-AFT 438 (936)
Q Consensus 366 Leav~PVa~G~ArA~q~~~~d~~~~~~v~v~~hGDgA~sGQGvv~EtLNlA--~LP~Y~~GGtIhIV~NNQi-gfT 438 (936)
.|...|.|+|+.+|.. + .-+|++.|||+|- .--..|+...+ ++| +++||.||+. |++
T Consensus 70 ~G~alPaAiGaklA~P----d-----r~VV~i~GDG~f~-~~g~~el~ta~r~nlp------i~iIV~NN~~yGmt 129 (277)
T PRK09628 70 HGRAVAYATGIKLANP----D-----KHVIVVSGDGDGL-AIGGNHTIHGCRRNID------LNFILINNFIYGLT 129 (277)
T ss_pred cccHHHHHHHHHHHCC----C-----CeEEEEECchHHH-HhhHHHHHHHHHhCcC------eEEEEEEChHHhcc
Confidence 4677889999988852 2 4689999999984 22256776666 999 9999999974 653
No 109
>PRK08527 acetolactate synthase 3 catalytic subunit; Validated
Probab=95.46 E-value=0.022 Score=68.58 Aligned_cols=54 Identities=26% Similarity=0.399 Sum_probs=40.0
Q ss_pred CCCccccceeechhHHHHHhcCCCCCCceEEEEEecCcccCCCchHHHhhhcc--CCCCCccccEEEEEEeCC
Q 002323 364 SHLEAVDPVVVGKTRAKQYYSHDVDRTKNMGVLIHGDGSFAGQGVVYETLHLS--ALPNYTTGGTIHIVVNNQ 434 (936)
Q Consensus 364 SHLeav~PVa~G~ArA~q~~~~d~~~~~~v~v~~hGDgA~sGQGvv~EtLNlA--~LP~Y~~GGtIhIV~NNQ 434 (936)
+.+|...|.++|++.|.. + .-+|++.|||+|- . .++|-...+ +|| +|+||.||+
T Consensus 414 g~mG~~l~~aiGa~la~p----~-----~~vv~i~GDG~f~-m-~~~eL~Ta~~~~lp------vi~vV~NN~ 469 (563)
T PRK08527 414 GTMGYGLPAALGAKLAVP----D-----KVVINFTGDGSIL-M-NIQELMTAVEYKIP------VINIILNNN 469 (563)
T ss_pred ccccchHHHHHHHHHhCC----C-----CcEEEEecCchhc-c-cHHHHHHHHHhCCC------eEEEEEECC
Confidence 347888889999988852 2 3579999999996 4 335522222 999 999999997
No 110
>PRK08617 acetolactate synthase; Reviewed
Probab=95.43 E-value=0.016 Score=69.62 Aligned_cols=98 Identities=18% Similarity=0.194 Sum_probs=58.0
Q ss_pred CCccccceeechhHHHHHhcCCCCCCceEEEEEecCcccCCCchHHHhhhcc--CCCCCccccEEEEEEeCCcccccCCC
Q 002323 365 HLEAVDPVVVGKTRAKQYYSHDVDRTKNMGVLIHGDGSFAGQGVVYETLHLS--ALPNYTTGGTIHIVVNNQVAFTTDPR 442 (936)
Q Consensus 365 HLeav~PVa~G~ArA~q~~~~d~~~~~~v~v~~hGDgA~sGQGvv~EtLNlA--~LP~Y~~GGtIhIV~NNQigfTT~~~ 442 (936)
.+|...|-++|++.|.. + .-+|++.|||||. =...|=...+ +|| +++||.||+ ++..-..
T Consensus 415 ~mG~~lpaaiGa~la~p----~-----~~vv~i~GDGsf~--m~~~eL~Ta~~~~lp------v~~vV~NN~-~~~~~~~ 476 (552)
T PRK08617 415 TLGVALPWAIAAALVRP----G-----KKVVSVSGDGGFL--FSAMELETAVRLKLN------IVHIIWNDG-HYNMVEF 476 (552)
T ss_pred cccccccHHHhhHhhcC----C-----CcEEEEEechHHh--hhHHHHHHHHHhCCC------eEEEEEECC-ccchHHH
Confidence 36777788888877642 2 4578999999996 2223333333 999 999999997 3433110
Q ss_pred -----CCC-------Ccchhh--H---------HHHHHHHHHHHHHHccCCCEEEEEEeee
Q 002323 443 -----AGR-------SSQYCT--D---------AVVHVCELAAEWRQKFHSDVVVDLVCYR 480 (936)
Q Consensus 443 -----~~r-------ss~y~t--D---------AV~~a~~~A~e~rr~f~~pvlIdlv~YR 480 (936)
..+ ...|+. . .-.+-.+.|++.+.+.++|+|||+++-|
T Consensus 477 ~~~~~~~~~~~~~~~~~d~~~lA~a~G~~~~~v~~~~eL~~al~~a~~~~~p~liev~~~~ 537 (552)
T PRK08617 477 QEEMKYGRSSGVDFGPVDFVKYAESFGAKGLRVTSPDELEPVLREALATDGPVVIDIPVDY 537 (552)
T ss_pred HHHhhcCCcccCCCCCCCHHHHHHHCCCeEEEECCHHHHHHHHHHHHhCCCcEEEEEEecc
Confidence 000 011211 0 1122334555555567899999999854
No 111
>cd02018 TPP_PFOR Thiamine pyrophosphate (TPP family), Pyruvate ferredoxin/flavodoxin oxidoreductase (PFOR) subfamily, TPP-binding module; PFOR catalyzes the oxidative decarboxylation of pyruvate to form acetyl-CoA, a crucial step in many metabolic pathways. Archaea, anaerobic bacteria and eukaryotes that lack mitochondria (and therefore pyruvate dehydrogenase) use PFOR to oxidatively decarboxylate pyruvate, with ferredoxin or flavodoxin as the electron acceptor. PFORs can be homodimeric, heterodimeric, or heterotetrameric, depending on the organism. These enzymes are dependent on TPP and a divalent metal cation as cofactors.
Probab=95.41 E-value=0.015 Score=62.75 Aligned_cols=62 Identities=18% Similarity=0.056 Sum_probs=38.7
Q ss_pred CCccccceeechhHHHHHhcCCCCCCceEEEEEecCccc---CCCchHHHhhhccCCCCCccccEEEEEEeCC-cccc
Q 002323 365 HLEAVDPVVVGKTRAKQYYSHDVDRTKNMGVLIHGDGSF---AGQGVVYETLHLSALPNYTTGGTIHIVVNNQ-VAFT 438 (936)
Q Consensus 365 HLeav~PVa~G~ArA~q~~~~d~~~~~~v~v~~hGDgA~---sGQGvv~EtLNlA~LP~Y~~GGtIhIV~NNQ-igfT 438 (936)
.+|...|-|+|++.|+-... ..+.-+|++.|||++ +.|....|.- .++| +++||.||+ ||.+
T Consensus 65 ~mG~GlpaAiGA~~a~~~~~----~p~~~Vv~i~GDG~~~~~g~~~l~ta~~--~~l~------i~ivVlNN~~yg~~ 130 (237)
T cd02018 65 AVASGLKRGLKARFPKDREL----DKKKDVVVIGGDGATYDIGFGALSHSLF--RGED------ITVIVLDNEVYSNT 130 (237)
T ss_pred HHHHHHHHHHHhhccccccc----CCCCcEEEEeCchHHHhccHHHHHHHHH--cCCC------eEEEEECCccccCC
Confidence 36667777777766621111 112568999999986 3233333321 3999 999999998 3544
No 112
>PRK11866 2-oxoacid ferredoxin oxidoreductase subunit beta; Provisional
Probab=95.40 E-value=0.019 Score=63.69 Aligned_cols=56 Identities=29% Similarity=0.329 Sum_probs=41.0
Q ss_pred CccccceeechhHHHHHhcCCCCCCceEEEEEecCc-ccCCCchHHHhhhcc--CCCCCccccEEEEEEeCCc-ccc
Q 002323 366 LEAVDPVVVGKTRAKQYYSHDVDRTKNMGVLIHGDG-SFAGQGVVYETLHLS--ALPNYTTGGTIHIVVNNQV-AFT 438 (936)
Q Consensus 366 Leav~PVa~G~ArA~q~~~~d~~~~~~v~v~~hGDg-A~sGQGvv~EtLNlA--~LP~Y~~GGtIhIV~NNQi-gfT 438 (936)
.|...|+|+|+.+|.. + .-+|++.||| +|. -| ..|-.+.+ ++| +++||.||+. |.|
T Consensus 61 ~G~alp~A~GaklA~P----d-----~~VV~i~GDG~~f~-ig-~~eL~tA~rrn~~------i~vIV~nN~~ygmt 120 (279)
T PRK11866 61 HGRVLPIATGVKWANP----K-----LTVIGYGGDGDGYG-IG-LGHLPHAARRNVD------ITYIVSNNQVYGLT 120 (279)
T ss_pred cccHHHHHHHHHHHCC----C-----CcEEEEECChHHHH-cc-HHHHHHHHHHCcC------cEEEEEEChhhhhh
Confidence 4888999999999843 2 3479999999 564 44 44555555 999 9999999963 444
No 113
>PRK08273 thiamine pyrophosphate protein; Provisional
Probab=95.40 E-value=0.015 Score=70.66 Aligned_cols=57 Identities=18% Similarity=0.251 Sum_probs=39.2
Q ss_pred CCCccccceeechhHHHHHhcCCCCCCceEEEEEecCcccCCCc---hHHHhhhcc----CCCCCccccEEEEEEeCC-c
Q 002323 364 SHLEAVDPVVVGKTRAKQYYSHDVDRTKNMGVLIHGDGSFAGQG---VVYETLHLS----ALPNYTTGGTIHIVVNNQ-V 435 (936)
Q Consensus 364 SHLeav~PVa~G~ArA~q~~~~d~~~~~~v~v~~hGDgA~sGQG---vv~EtLNlA----~LP~Y~~GGtIhIV~NNQ-i 435 (936)
..+|...|-++|++.|.. + .=+|++.|||+|. -. ..+-+...- +|| +++||.||. |
T Consensus 415 g~mG~glpaaiGa~la~p----~-----~~Vv~i~GDG~f~-m~~~~EL~Ta~r~~~~~~~lp------viivV~NN~~~ 478 (597)
T PRK08273 415 ATMGPAVPYAIAAKFAHP----D-----RPVIALVGDGAMQ-MNGMAELITVAKYWRQWSDPR------LIVLVLNNRDL 478 (597)
T ss_pred ccccchHHHHHHHHHhCC----C-----CcEEEEEcchhHh-ccchHHHHHHHHHhhcccCCC------EEEEEEeCCcc
Confidence 347888888888888852 2 3479999999995 22 222222221 699 999999997 5
Q ss_pred c
Q 002323 436 A 436 (936)
Q Consensus 436 g 436 (936)
|
T Consensus 479 ~ 479 (597)
T PRK08273 479 N 479 (597)
T ss_pred h
Confidence 4
No 114
>PRK09259 putative oxalyl-CoA decarboxylase; Validated
Probab=95.33 E-value=0.013 Score=70.58 Aligned_cols=51 Identities=20% Similarity=0.225 Sum_probs=37.3
Q ss_pred CccccceeechhHHHHHhcCCCCCCceEEEEEecCcccCCCchHHHhhhcc--CCCCCccccEEEEEEeCC
Q 002323 366 LEAVDPVVVGKTRAKQYYSHDVDRTKNMGVLIHGDGSFAGQGVVYETLHLS--ALPNYTTGGTIHIVVNNQ 434 (936)
Q Consensus 366 Leav~PVa~G~ArA~q~~~~d~~~~~~v~v~~hGDgA~sGQGvv~EtLNlA--~LP~Y~~GGtIhIV~NNQ 434 (936)
+|...|-++|++.|. + .-+|++.|||+|. - .+.|-.-++ +|| +++||.||+
T Consensus 426 mG~glpaaiGa~la~-----~-----~~vv~i~GDG~f~-m-~~~EL~Ta~r~~lp------i~~vV~NN~ 478 (569)
T PRK09259 426 MGIGMGYAIAAAVET-----G-----KPVVAIEGDSAFG-F-SGMEVETICRYNLP------VTVVIFNNG 478 (569)
T ss_pred ccccHHHHHHHHhcC-----C-----CcEEEEecCcccc-c-cHHHHHHHHHcCCC------EEEEEEeCh
Confidence 777788899998872 2 3488999999996 1 123322222 999 999999998
No 115
>PLN02573 pyruvate decarboxylase
Probab=95.30 E-value=0.025 Score=68.51 Aligned_cols=57 Identities=19% Similarity=0.238 Sum_probs=40.6
Q ss_pred CCCccccceeechhHHHHHhcCCCCCCceEEEEEecCcccCCCchHHHhhhcc--CCCCCccccEEEEEEeCC-ccc
Q 002323 364 SHLEAVDPVVVGKTRAKQYYSHDVDRTKNMGVLIHGDGSFAGQGVVYETLHLS--ALPNYTTGGTIHIVVNNQ-VAF 437 (936)
Q Consensus 364 SHLeav~PVa~G~ArA~q~~~~d~~~~~~v~v~~hGDgA~sGQGvv~EtLNlA--~LP~Y~~GGtIhIV~NNQ-igf 437 (936)
..+|...|-++|++.|.. + .-+|++.|||+|. =.++|=...+ +|| +++||.||+ ||+
T Consensus 428 gsmG~glpaaiGa~lA~p----~-----r~vv~i~GDG~f~--m~~~EL~Ta~r~~lp------vv~vV~NN~~yg~ 487 (578)
T PLN02573 428 GSIGWSVGATLGYAQAAP----D-----KRVIACIGDGSFQ--VTAQDVSTMIRCGQK------SIIFLINNGGYTI 487 (578)
T ss_pred hhhhhhhhHHHHHHHhCC----C-----CceEEEEeccHHH--hHHHHHHHHHHcCCC------CEEEEEeCCceeE
Confidence 457888888888888752 2 4589999999995 2223333333 999 999999987 453
No 116
>PRK05778 2-oxoglutarate ferredoxin oxidoreductase subunit beta; Validated
Probab=95.22 E-value=0.017 Score=64.61 Aligned_cols=58 Identities=24% Similarity=0.285 Sum_probs=41.8
Q ss_pred CccccceeechhHHHHHhcCCCCCCceEEEEEecCcccCCCchHHHhhhcc--CCCCCccccEEEEEEeCCc-cccc
Q 002323 366 LEAVDPVVVGKTRAKQYYSHDVDRTKNMGVLIHGDGSFAGQGVVYETLHLS--ALPNYTTGGTIHIVVNNQV-AFTT 439 (936)
Q Consensus 366 Leav~PVa~G~ArA~q~~~~d~~~~~~v~v~~hGDgA~sGQGvv~EtLNlA--~LP~Y~~GGtIhIV~NNQi-gfTT 439 (936)
.|-..|.|+|+.+|.. + .-+|++.|||++-+-| ..|-...+ ++| +++||.||+. |.|.
T Consensus 72 mG~alpaAiGaklA~p----d-----~~VV~i~GDG~~~~mg-~~eL~tA~r~nl~------i~vIV~NN~~YG~t~ 132 (301)
T PRK05778 72 HGRAIAFATGAKLANP----D-----LEVIVVGGDGDLASIG-GGHFIHAGRRNID------ITVIVENNGIYGLTK 132 (301)
T ss_pred hccHHHHHHHHHHHCC----C-----CcEEEEeCccHHHhcc-HHHHHHHHHHCCC------cEEEEEeCchhhccc
Confidence 5778899999998853 2 4578999999863233 34444444 999 9999999984 6543
No 117
>PRK09107 acetolactate synthase 3 catalytic subunit; Validated
Probab=95.18 E-value=0.0099 Score=72.14 Aligned_cols=56 Identities=25% Similarity=0.300 Sum_probs=40.6
Q ss_pred CCCccccceeechhHHHHHhcCCCCCCceEEEEEecCcccCCCchHHHhhhcc--CCCCCccccEEEEEEeCC-cc
Q 002323 364 SHLEAVDPVVVGKTRAKQYYSHDVDRTKNMGVLIHGDGSFAGQGVVYETLHLS--ALPNYTTGGTIHIVVNNQ-VA 436 (936)
Q Consensus 364 SHLeav~PVa~G~ArA~q~~~~d~~~~~~v~v~~hGDgA~sGQGvv~EtLNlA--~LP~Y~~GGtIhIV~NNQ-ig 436 (936)
+.+|...|-++|++.|.. + .-+|++.|||+|- =.+.|=.-.+ +|| +++||.||+ ||
T Consensus 430 gsmG~glpaaiGa~lA~p----~-----r~Vv~i~GDG~f~--m~~~EL~Ta~r~~lp------vi~vV~NN~~y~ 488 (595)
T PRK09107 430 GTMGYGLPAALGVQIAHP----D-----ALVIDIAGDASIQ--MCIQEMSTAVQYNLP------VKIFILNNQYMG 488 (595)
T ss_pred hhhhhhHHHHHHHHHhCC----C-----CeEEEEEcCchhh--ccHHHHHHHHHhCCC------eEEEEEeCCccH
Confidence 457888899999888853 2 4688999999995 2223322222 999 999999998 44
No 118
>PRK06882 acetolactate synthase 3 catalytic subunit; Validated
Probab=95.10 E-value=0.044 Score=66.14 Aligned_cols=54 Identities=22% Similarity=0.345 Sum_probs=41.0
Q ss_pred CCCccccceeechhHHHHHhcCCCCCCceEEEEEecCcccCCCchHHHhhhcc--CCCCCccccEEEEEEeCC
Q 002323 364 SHLEAVDPVVVGKTRAKQYYSHDVDRTKNMGVLIHGDGSFAGQGVVYETLHLS--ALPNYTTGGTIHIVVNNQ 434 (936)
Q Consensus 364 SHLeav~PVa~G~ArA~q~~~~d~~~~~~v~v~~hGDgA~sGQGvv~EtLNlA--~LP~Y~~GGtIhIV~NNQ 434 (936)
+.+|...|-++|++.|.. + .-+|++.|||+|. .. +.|-...+ +|| +++||.||+
T Consensus 421 g~mG~~lp~aiGa~la~p----~-----~~vv~i~GDG~f~-~~-~~eL~ta~~~~lp------v~~vV~NN~ 476 (574)
T PRK06882 421 GTMGFGLPAAIGVKFAHP----E-----ATVVCVTGDGSIQ-MN-IQELSTAKQYDIP------VVIVSLNNR 476 (574)
T ss_pred ccccchhHHHHHHHhhcC----C-----CcEEEEEcchhhh-cc-HHHHHHHHHhCCC------eEEEEEECc
Confidence 337888899999988852 2 3578999999996 65 34433333 999 999999998
No 119
>PRK06276 acetolactate synthase catalytic subunit; Reviewed
Probab=95.06 E-value=0.031 Score=67.75 Aligned_cols=56 Identities=23% Similarity=0.368 Sum_probs=39.5
Q ss_pred CCccccceeechhHHHHHhcCCCCCCceEEEEEecCcccCCCchHHHhhhcc--CCCCCccccEEEEEEeCC-ccc
Q 002323 365 HLEAVDPVVVGKTRAKQYYSHDVDRTKNMGVLIHGDGSFAGQGVVYETLHLS--ALPNYTTGGTIHIVVNNQ-VAF 437 (936)
Q Consensus 365 HLeav~PVa~G~ArA~q~~~~d~~~~~~v~v~~hGDgA~sGQGvv~EtLNlA--~LP~Y~~GGtIhIV~NNQ-igf 437 (936)
.+|...|-++|++.|.. + .-+|++.|||+|- =...|-..++ +|| +++||.||+ ||+
T Consensus 420 smG~~lpaaiGa~la~p----~-----~~Vv~i~GDGsf~--m~~~eL~Ta~~~~lp------v~~vV~NN~~~g~ 478 (586)
T PRK06276 420 TMGFGFPAAIGAKVAKP----D-----ANVIAITGDGGFL--MNSQELATIAEYDIP------VVICIFDNRTLGM 478 (586)
T ss_pred ccccchhHHHhhhhhcC----C-----CcEEEEEcchHhh--ccHHHHHHHHHhCCC------eEEEEEeCCchHH
Confidence 47778888999888742 1 3478999999995 2233333333 999 999999998 443
No 120
>PRK05858 hypothetical protein; Provisional
Probab=95.04 E-value=0.022 Score=68.35 Aligned_cols=52 Identities=25% Similarity=0.389 Sum_probs=38.4
Q ss_pred CccccceeechhHHHHHhcCCCCCCceEEEEEecCcccCCCchHHHhhhcc--CCCCCccccEEEEEEeCC
Q 002323 366 LEAVDPVVVGKTRAKQYYSHDVDRTKNMGVLIHGDGSFAGQGVVYETLHLS--ALPNYTTGGTIHIVVNNQ 434 (936)
Q Consensus 366 Leav~PVa~G~ArA~q~~~~d~~~~~~v~v~~hGDgA~sGQGvv~EtLNlA--~LP~Y~~GGtIhIV~NNQ 434 (936)
+|...|.++|++.|.. + .-+|++.|||+|- -. ++|-...+ +|| +++||.||+
T Consensus 409 mG~~lp~aiGa~la~p----~-----r~vv~i~GDG~f~-~~-~~eL~Ta~~~~lp------i~ivV~NN~ 462 (542)
T PRK05858 409 LGTGPGYALAARLARP----S-----RQVVLLQGDGAFG-FS-LMDVDTLVRHNLP------VVSVIGNNG 462 (542)
T ss_pred cccchhHHHHHHHhCC----C-----CcEEEEEcCchhc-Cc-HHHHHHHHHcCCC------EEEEEEeCC
Confidence 7777888888888752 2 4589999999995 22 34444444 899 999999984
No 121
>PRK06048 acetolactate synthase 3 catalytic subunit; Reviewed
Probab=94.90 E-value=0.041 Score=66.31 Aligned_cols=53 Identities=28% Similarity=0.374 Sum_probs=37.7
Q ss_pred CCccccceeechhHHHHHhcCCCCCCceEEEEEecCcccCCCchHHHhhhcc--CCCCCccccEEEEEEeCC
Q 002323 365 HLEAVDPVVVGKTRAKQYYSHDVDRTKNMGVLIHGDGSFAGQGVVYETLHLS--ALPNYTTGGTIHIVVNNQ 434 (936)
Q Consensus 365 HLeav~PVa~G~ArA~q~~~~d~~~~~~v~v~~hGDgA~sGQGvv~EtLNlA--~LP~Y~~GGtIhIV~NNQ 434 (936)
.+|...|-++|++.|.. + .-+|++.|||+|. -. ..|=...+ +|| +++||.||.
T Consensus 415 ~mG~glpaaiGa~la~p----~-----~~Vv~i~GDG~f~-m~-~~eL~Ta~~~~l~------i~~vV~NN~ 469 (561)
T PRK06048 415 TMGYGFPAAIGAKVGKP----D-----KTVIDIAGDGSFQ-MN-SQELATAVQNDIP------VIVAILNNG 469 (561)
T ss_pred ccccHHHHHHHHHHhCC----C-----CcEEEEEeCchhh-cc-HHHHHHHHHcCCC------eEEEEEECC
Confidence 47777888888888742 2 3468999999996 32 23333333 999 999999996
No 122
>PRK07282 acetolactate synthase catalytic subunit; Reviewed
Probab=94.82 E-value=0.014 Score=70.43 Aligned_cols=56 Identities=23% Similarity=0.361 Sum_probs=39.2
Q ss_pred CCCccccceeechhHHHHHhcCCCCCCceEEEEEecCcccCCCchHHHhhhccCCCCCccccEEEEEEeCC
Q 002323 364 SHLEAVDPVVVGKTRAKQYYSHDVDRTKNMGVLIHGDGSFAGQGVVYETLHLSALPNYTTGGTIHIVVNNQ 434 (936)
Q Consensus 364 SHLeav~PVa~G~ArA~q~~~~d~~~~~~v~v~~hGDgA~sGQGvv~EtLNlA~LP~Y~~GGtIhIV~NNQ 434 (936)
+.+|...|-++|++.|.. + .-+|++.|||+|.=.+-=.+|+.--+|| +++||.||+
T Consensus 418 g~mG~glpaaiGa~lA~p----~-----~~Vv~i~GDG~f~m~~~eL~Ta~~~~l~------i~~vV~NN~ 473 (566)
T PRK07282 418 GTMGFGIPAAIGAKIANP----D-----KEVILFVGDGGFQMTNQELAILNIYKVP------IKVVMLNNH 473 (566)
T ss_pred ccccchhhHhheeheecC----C-----CcEEEEEcchhhhccHHHHHHHHHhCCC------eEEEEEeCC
Confidence 558888999999998852 1 2368999999996111122222222999 999999987
No 123
>cd03375 TPP_OGFOR Thiamine pyrophosphate (TPP family), 2-oxoglutarate ferredoxin oxidoreductase (OGFOR) subfamily, TPP-binding module; OGFOR catalyzes the oxidative decarboxylation of 2-oxo-acids, with ferredoxin acting as an electron acceptor. In the TCA cycle, OGFOR catalyzes the oxidative decarboxylation of 2-oxoglutarate to succinyl-CoA. In the reductive tricarboxylic acid cycle found in the anaerobic autotroph Hydrogenobacter thermophilus, OGFOR catalyzes the reductive carboxylation of succinyl-CoA to produce 2-oxoglutarate. Thauera aromatica OGFOR has been shown to provide reduced ferredoxin to benzoyl-CoA reductase, a key enzyme in the anaerobic metabolism of aromatic compounds. OGFOR is dependent on TPP and a divalent metal cation for activity.
Probab=94.81 E-value=0.043 Score=57.34 Aligned_cols=57 Identities=26% Similarity=0.279 Sum_probs=40.6
Q ss_pred CccccceeechhHHHHHhcCCCCCCceEEEEEecCcccCCCchHHHhhhcc--CCCCCccccEEEEEEeCCc-ccc
Q 002323 366 LEAVDPVVVGKTRAKQYYSHDVDRTKNMGVLIHGDGSFAGQGVVYETLHLS--ALPNYTTGGTIHIVVNNQV-AFT 438 (936)
Q Consensus 366 Leav~PVa~G~ArA~q~~~~d~~~~~~v~v~~hGDgA~sGQGvv~EtLNlA--~LP~Y~~GGtIhIV~NNQi-gfT 438 (936)
+|...|.|+|+++|.. + .-+|++.|||++- +=-+.|-.... ++| +++||.||+. |.+
T Consensus 53 mG~glpaAiGa~la~p----~-----r~Vv~i~GDGs~f-~m~~~eL~ta~~~~lp------v~iiVlnN~~yg~~ 112 (193)
T cd03375 53 HGRALAVATGVKLANP----D-----LTVIVVSGDGDLA-AIGGNHFIHAARRNID------ITVIVHNNQIYGLT 112 (193)
T ss_pred hccHHHHHHHHHHhCC----C-----CeEEEEeccchHh-hccHHHHHHHHHhCCC------eEEEEEcCcccccC
Confidence 6778888999888742 2 4689999999942 22245555555 999 9999999864 544
No 124
>PRK08979 acetolactate synthase 3 catalytic subunit; Validated
Probab=94.79 E-value=0.042 Score=66.40 Aligned_cols=54 Identities=26% Similarity=0.296 Sum_probs=39.0
Q ss_pred CCCccccceeechhHHHHHhcCCCCCCceEEEEEecCcccCCCchHHHhhhcc--CCCCCccccEEEEEEeCC
Q 002323 364 SHLEAVDPVVVGKTRAKQYYSHDVDRTKNMGVLIHGDGSFAGQGVVYETLHLS--ALPNYTTGGTIHIVVNNQ 434 (936)
Q Consensus 364 SHLeav~PVa~G~ArA~q~~~~d~~~~~~v~v~~hGDgA~sGQGvv~EtLNlA--~LP~Y~~GGtIhIV~NNQ 434 (936)
+.+|...|-++|++.|.. + .-+|++.|||+|. -. ..|=.... +|| +++||.||+
T Consensus 421 g~mG~glpaaiGa~la~p----~-----~~vv~i~GDG~f~-m~-~~EL~Ta~r~~lp------v~~vV~NN~ 476 (572)
T PRK08979 421 GTMGFGLPAAMGVKFAMP----D-----ETVVCVTGDGSIQ-MN-IQELSTALQYDIP------VKIINLNNR 476 (572)
T ss_pred ccccchhhHHHhhhhhCC----C-----CeEEEEEcchHhh-cc-HHHHHHHHHcCCC------eEEEEEeCC
Confidence 458888999999998852 1 3478999999996 22 22322222 999 999999987
No 125
>TIGR03254 oxalate_oxc oxalyl-CoA decarboxylase. In a number of bacteria, including Oxalobacter formigenes from the human gut, a two-gene operon of oxc (oxalyl-CoA decarboxylase) and frc (formyl-CoA transferase) encodes a system for degrading and therefore detoxifying oxalate. Members of this family are the thiamine pyrophosphate (TPP)-containing enzyme oxalyl-CoA decarboxylase.
Probab=94.78 E-value=0.049 Score=65.45 Aligned_cols=52 Identities=17% Similarity=0.206 Sum_probs=38.1
Q ss_pred CCccccceeechhHHHHHhcCCCCCCceEEEEEecCcccCCCchHHHhhhcc--CCCCCccccEEEEEEeCC
Q 002323 365 HLEAVDPVVVGKTRAKQYYSHDVDRTKNMGVLIHGDGSFAGQGVVYETLHLS--ALPNYTTGGTIHIVVNNQ 434 (936)
Q Consensus 365 HLeav~PVa~G~ArA~q~~~~d~~~~~~v~v~~hGDgA~sGQGvv~EtLNlA--~LP~Y~~GGtIhIV~NNQ 434 (936)
.+|...|-++|++.|. + .-+|++.|||+|. -. ..|-..++ +|| +++||.||+
T Consensus 418 smG~~lpaaiGaala~-----~-----~~vv~i~GDGsf~-m~-~~EL~Ta~r~~l~------v~~vV~NN~ 471 (554)
T TIGR03254 418 VMGIGMGYAIAAAVET-----G-----KPVVALEGDSAFG-FS-GMEVETICRYNLP------VCVVIFNNG 471 (554)
T ss_pred cCCchHHHHHHHHhcC-----C-----CcEEEEEcCchhc-cc-HHHHHHHHHcCCC------EEEEEEeCh
Confidence 3777888888988872 2 3488899999996 22 23422222 999 999999998
No 126
>TIGR03393 indolpyr_decarb indolepyruvate decarboxylase, Erwinia family. A family of closely related, thiamine pyrophosphate-dependent enzymes includes indolepyruvate decarboxylase (EC 4.1.1.74), phenylpyruvate decarboxylase (EC 4.1.1.43), pyruvate decarboxylase (EC 4.1.1.1), branched-chain alpha-ketoacid decarboxylase, etc.. Members of this group of homologs may overlap in specificity. Within the larger family, this model represents a clade of bacterial indolepyruvate decarboxylases, part of a pathway for biosynthesis of the plant hormone indole-3-acetic acid. Typically, these species interact with plants, as pathogens or as beneficial, root-associated bacteria.
Probab=94.75 E-value=0.016 Score=69.41 Aligned_cols=98 Identities=16% Similarity=0.151 Sum_probs=57.9
Q ss_pred CCCccccceeechhHHHHHhcCCCCCCceEEEEEecCcccCCCchHHHhhhcc--CCCCCccccEEEEEEeCC-cccccC
Q 002323 364 SHLEAVDPVVVGKTRAKQYYSHDVDRTKNMGVLIHGDGSFAGQGVVYETLHLS--ALPNYTTGGTIHIVVNNQ-VAFTTD 440 (936)
Q Consensus 364 SHLeav~PVa~G~ArA~q~~~~d~~~~~~v~v~~hGDgA~sGQGvv~EtLNlA--~LP~Y~~GGtIhIV~NNQ-igfTT~ 440 (936)
+.+|...|-++|++.|.. + .-+|++.|||+|. - ..+|=...+ +|| +++||.||+ ||+--.
T Consensus 404 g~mG~glpaaiGa~la~p----~-----~~vv~i~GDG~f~-m-~~~EL~Ta~~~~lp------i~~vV~NN~~y~~i~~ 466 (539)
T TIGR03393 404 GSIGYTLPAAFGAQTACP----N-----RRVILLIGDGSAQ-L-TIQELGSMLRDKQH------PIILVLNNEGYTVERA 466 (539)
T ss_pred hhhhhHHHHHHHHHhcCC----C-----CCeEEEEcCcHHH-h-HHHHHHHHHHcCCC------CEEEEEeCCceEEEEe
Confidence 558888888999888742 2 3478999999996 1 123322222 999 999998887 442110
Q ss_pred CC--CCC-----Ccchhh-----------H----HHHHHHHHHHHHHHccCCCEEEEEEe
Q 002323 441 PR--AGR-----SSQYCT-----------D----AVVHVCELAAEWRQKFHSDVVVDLVC 478 (936)
Q Consensus 441 ~~--~~r-----ss~y~t-----------D----AV~~a~~~A~e~rr~f~~pvlIdlv~ 478 (936)
.. +.+ ...|.. . .-..-.+.|++.+.+.++|+|||+.+
T Consensus 467 ~~~~~~~~~~~~~~df~~la~a~G~~~~~~~~~v~~~~el~~al~~a~~~~~p~liev~i 526 (539)
T TIGR03393 467 IHGAEQRYNDIALWNWTHLPQALSLDPQSECWRVSEAEQLADVLEKVAAHERLSLIEVVL 526 (539)
T ss_pred ecCCCCCcCcCCCCCHHHHHHHcCCCCccceEEeccHHHHHHHHHHHhccCCeEEEEEEc
Confidence 00 000 001100 0 01222345666666778999999987
No 127
>PRK11867 2-oxoglutarate ferredoxin oxidoreductase subunit beta; Reviewed
Probab=94.68 E-value=0.043 Score=61.10 Aligned_cols=56 Identities=25% Similarity=0.312 Sum_probs=41.1
Q ss_pred CccccceeechhHHHHHhcCCCCCCceEEEEEecCcc-cCCCchHHHhhhcc--CCCCCccccEEEEEEeCC-cccc
Q 002323 366 LEAVDPVVVGKTRAKQYYSHDVDRTKNMGVLIHGDGS-FAGQGVVYETLHLS--ALPNYTTGGTIHIVVNNQ-VAFT 438 (936)
Q Consensus 366 Leav~PVa~G~ArA~q~~~~d~~~~~~v~v~~hGDgA-~sGQGvv~EtLNlA--~LP~Y~~GGtIhIV~NNQ-igfT 438 (936)
.|...|.|+|++.|.. + .-+|++.|||+ |. -| ..|-...+ ++| +++||.||+ ||.|
T Consensus 71 mG~alpaAiGaklA~P----d-----~~VV~i~GDG~~f~-mg-~~eL~tA~r~nl~------i~vIV~NN~~yGmt 130 (286)
T PRK11867 71 HGRALAIATGLKLANP----D-----LTVIVVTGDGDALA-IG-GNHFIHALRRNID------ITYILFNNQIYGLT 130 (286)
T ss_pred hhcHHHHHHHHHHhCC----C-----CcEEEEeCccHHHh-CC-HHHHHHHHHhCCC------cEEEEEeCHHHhhh
Confidence 5888899999988842 2 46889999996 53 44 44555555 999 999999986 4554
No 128
>PLN02470 acetolactate synthase
Probab=94.54 E-value=0.043 Score=66.50 Aligned_cols=54 Identities=37% Similarity=0.547 Sum_probs=38.1
Q ss_pred CCCccccceeechhHHHHHhcCCCCCCceEEEEEecCcccCCCchHHH--hhhccCCCCCccccEEEEEEeCC
Q 002323 364 SHLEAVDPVVVGKTRAKQYYSHDVDRTKNMGVLIHGDGSFAGQGVVYE--TLHLSALPNYTTGGTIHIVVNNQ 434 (936)
Q Consensus 364 SHLeav~PVa~G~ArA~q~~~~d~~~~~~v~v~~hGDgA~sGQGvv~E--tLNlA~LP~Y~~GGtIhIV~NNQ 434 (936)
..+|...|-++|++.|.. + .-+|++.|||||. -. ..| |+---+|| +++||.||+
T Consensus 426 g~mG~glpaaiGa~la~p----~-----~~Vv~i~GDG~f~-m~-~~eL~Ta~~~~l~------v~ivV~NN~ 481 (585)
T PLN02470 426 GAMGFGLPAAIGAAAANP----D-----AIVVDIDGDGSFI-MN-IQELATIHVENLP------VKIMVLNNQ 481 (585)
T ss_pred ccccchHHHHHHHHHhCC----C-----CcEEEEEccchhh-cc-HHHHHHHHHhCCC------eEEEEEeCC
Confidence 347788888888888752 2 3478999999996 22 122 22222999 999999996
No 129
>PRK07979 acetolactate synthase 3 catalytic subunit; Validated
Probab=94.45 E-value=0.044 Score=66.22 Aligned_cols=55 Identities=24% Similarity=0.285 Sum_probs=38.2
Q ss_pred CCCccccceeechhHHHHHhcCCCCCCceEEEEEecCcccCCCc-hHHHhhhccCCCCCccccEEEEEEeCC
Q 002323 364 SHLEAVDPVVVGKTRAKQYYSHDVDRTKNMGVLIHGDGSFAGQG-VVYETLHLSALPNYTTGGTIHIVVNNQ 434 (936)
Q Consensus 364 SHLeav~PVa~G~ArA~q~~~~d~~~~~~v~v~~hGDgA~sGQG-vv~EtLNlA~LP~Y~~GGtIhIV~NNQ 434 (936)
+.+|...|-++|++.|.. + .-+|++.|||+|. -. -=.+|.---+|| +++||.||+
T Consensus 421 g~mG~glpaaiGa~la~p----~-----~~vv~i~GDG~f~-m~~~eL~Ta~r~~l~------v~ivV~NN~ 476 (574)
T PRK07979 421 GTMGFGLPAALGVKMALP----E-----ETVVCVTGDGSIQ-MNIQELSTALQYELP------VLVLNLNNR 476 (574)
T ss_pred cchhhHHHHHHHHHHhCC----C-----CeEEEEEcchhhh-ccHHHHHHHHHhCCC------eEEEEEeCc
Confidence 457888888999888852 2 3578999999996 21 111121111999 999999997
No 130
>PRK06457 pyruvate dehydrogenase; Provisional
Probab=94.44 E-value=0.024 Score=68.04 Aligned_cols=55 Identities=25% Similarity=0.334 Sum_probs=37.8
Q ss_pred CCCccccceeechhHHHHHhcCCCCCCceEEEEEecCcccCCCchHHHhhhcc--CCCCCccccEEEEEEeCC
Q 002323 364 SHLEAVDPVVVGKTRAKQYYSHDVDRTKNMGVLIHGDGSFAGQGVVYETLHLS--ALPNYTTGGTIHIVVNNQ 434 (936)
Q Consensus 364 SHLeav~PVa~G~ArA~q~~~~d~~~~~~v~v~~hGDgA~sGQGvv~EtLNlA--~LP~Y~~GGtIhIV~NNQ 434 (936)
+.+|...|-++|++.|.. .+ .-+|++.|||+|- =...|=...+ +|| +++||.||+
T Consensus 396 g~mG~glpaaiGa~la~p---~~-----~~Vv~i~GDGsf~--~~~~eL~Ta~~~~lp------i~ivV~NN~ 452 (549)
T PRK06457 396 GSMGIGVPGSVGASFAVE---NK-----RQVISFVGDGGFT--MTMMELITAKKYDLP------VKIIIYNNS 452 (549)
T ss_pred chhhhhHHHHHHHHhcCC---CC-----CeEEEEEcccHHh--hhHHHHHHHHHHCCC------eEEEEEECC
Confidence 347777788888888752 02 3479999999995 2223322222 899 999999887
No 131
>TIGR03457 sulphoacet_xsc sulfoacetaldehyde acetyltransferase. Members of this protein family are sulfoacetaldehyde acetyltransferase, an enzyme of taurine utilization. Taurine, or 2-aminoethanesulfonate, can be used by bacteria as a source of carbon, nitrogen, and sulfur.
Probab=94.36 E-value=0.066 Score=64.78 Aligned_cols=97 Identities=19% Similarity=0.252 Sum_probs=59.6
Q ss_pred CCCccccceeechhHHHHHhcCCCCCCceEEEEEecCcccCCCchHHHhhhcc--CCCCCccccEEEEEEeCC-cccccC
Q 002323 364 SHLEAVDPVVVGKTRAKQYYSHDVDRTKNMGVLIHGDGSFAGQGVVYETLHLS--ALPNYTTGGTIHIVVNNQ-VAFTTD 440 (936)
Q Consensus 364 SHLeav~PVa~G~ArA~q~~~~d~~~~~~v~v~~hGDgA~sGQGvv~EtLNlA--~LP~Y~~GGtIhIV~NNQ-igfTT~ 440 (936)
+.+|...|-++|++.|.. + .-+|++.|||+|. -. ..|=.... +|| +|+||.||+ ||+-..
T Consensus 430 g~mG~~lpaaiGa~la~p----~-----~~Vv~i~GDG~f~-m~-~~eL~Tavr~~lp------vi~vV~NN~~yg~i~~ 492 (579)
T TIGR03457 430 GNCGYAFPTIIGAKIAAP----D-----RPVVAYAGDGAWG-MS-MNEIMTAVRHDIP------VTAVVFRNRQWGAEKK 492 (579)
T ss_pred ccccchHHHHHhhhhhCC----C-----CcEEEEEcchHHh-cc-HHHHHHHHHhCCC------eEEEEEECcchHHHHH
Confidence 347888888888888742 2 3578999999996 22 23333333 999 999999886 664210
Q ss_pred -----CCC------CCC-cchhh---------------HHHHHHHHHHHHHHHccCCCEEEEEEe
Q 002323 441 -----PRA------GRS-SQYCT---------------DAVVHVCELAAEWRQKFHSDVVVDLVC 478 (936)
Q Consensus 441 -----~~~------~rs-s~y~t---------------DAV~~a~~~A~e~rr~f~~pvlIdlv~ 478 (936)
... ... ..|+. ++...+.+.|++.. +.++|+|||+.+
T Consensus 493 ~~~~~~~~~~~~~~~~~~~d~~~lA~a~G~~g~~v~~~~el~~al~~a~~~~-~~~~p~lieV~v 556 (579)
T TIGR03457 493 NQVDFYNNRFVGTELESELSFAGIADAMGAKGVVVDKPEDVGPALKKAIAAQ-AEGKTTVIEIVC 556 (579)
T ss_pred HHHHhhCCcceeccCCCCCCHHHHHHHCCCeEEEECCHHHHHHHHHHHHhhC-CCCCcEEEEEEe
Confidence 000 001 12221 15556666666533 357899999998
No 132
>COG0028 IlvB Thiamine pyrophosphate-requiring enzymes [acetolactate synthase, pyruvate dehydrogenase (cytochrome), glyoxylate carboligase, phosphonopyruvate decarboxylase] [Amino acid transport and metabolism / Coenzyme metabolism]
Probab=94.34 E-value=0.047 Score=65.89 Aligned_cols=99 Identities=24% Similarity=0.217 Sum_probs=62.1
Q ss_pred CccccceeechhHHHHHhcCCCCCCceEEEEEecCcccCCCchHHHhhhcc--CCCCCccccEEEEEEeCC-cccccCCC
Q 002323 366 LEAVDPVVVGKTRAKQYYSHDVDRTKNMGVLIHGDGSFAGQGVVYETLHLS--ALPNYTTGGTIHIVVNNQ-VAFTTDPR 442 (936)
Q Consensus 366 Leav~PVa~G~ArA~q~~~~d~~~~~~v~v~~hGDgA~sGQGvv~EtLNlA--~LP~Y~~GGtIhIV~NNQ-igfTT~~~ 442 (936)
+|...|-|+|+..|.- + .-+|++.|||+|.= ..+|=.-.. ++| +++||.||+ ||+.-.-.
T Consensus 410 MG~glPaAIGAkla~P----~-----r~Vv~i~GDG~F~m--~~qEL~Ta~r~~lp------v~ivv~nN~~~g~v~~~q 472 (550)
T COG0028 410 MGFGLPAAIGAKLAAP----D-----RKVVAIAGDGGFMM--NGQELETAVRYGLP------VKIVVLNNGGYGMVRQWQ 472 (550)
T ss_pred ccchHHHHHHHHhhCC----C-----CcEEEEEcccHHhc--cHHHHHHHHHhCCC------EEEEEEECCccccchHHH
Confidence 6677777888777754 2 56899999999961 122222222 899 999999998 66653211
Q ss_pred CC----C-C-----cc-hhh--H---------HHHHHHHHHHHHHHccCCCEEEEEEeeec
Q 002323 443 AG----R-S-----SQ-YCT--D---------AVVHVCELAAEWRQKFHSDVVVDLVCYRR 481 (936)
Q Consensus 443 ~~----r-s-----s~-y~t--D---------AV~~a~~~A~e~rr~f~~pvlIdlv~YRr 481 (936)
+. + + .. |.. + ....-.+.|++.+-+-.+|+|||+.+=+-
T Consensus 473 ~~~~~~~~~~~~~~~~~f~klAea~G~~g~~v~~~~el~~al~~al~~~~p~lidv~id~~ 533 (550)
T COG0028 473 ELFYGGRYSGTDLGNPDFVKLAEAYGAKGIRVETPEELEEALEEALASDGPVLIDVVVDPE 533 (550)
T ss_pred HHhcCCCcceeecCCccHHHHHHHcCCeeEEeCCHHHHHHHHHHHHhCCCCEEEEEEecCc
Confidence 00 1 1 11 321 1 33334466677777889999999988543
No 133
>PRK08611 pyruvate oxidase; Provisional
Probab=94.22 E-value=0.034 Score=67.28 Aligned_cols=99 Identities=21% Similarity=0.275 Sum_probs=58.5
Q ss_pred CCccccceeechhHHHHHhcCCCCCCceEEEEEecCcccCCCchHHHhhhcc--CCCCCccccEEEEEEeCC-ccccc--
Q 002323 365 HLEAVDPVVVGKTRAKQYYSHDVDRTKNMGVLIHGDGSFAGQGVVYETLHLS--ALPNYTTGGTIHIVVNNQ-VAFTT-- 439 (936)
Q Consensus 365 HLeav~PVa~G~ArA~q~~~~d~~~~~~v~v~~hGDgA~sGQGvv~EtLNlA--~LP~Y~~GGtIhIV~NNQ-igfTT-- 439 (936)
.+|...|-++|++.|.. + .-+|++.|||||- -. ..|=..++ +|| +|+||.||. ||+--
T Consensus 409 ~mG~glpaaiGa~la~p----~-----~~Vv~i~GDGsf~-m~-~~eL~Ta~r~~l~------~iivV~NN~~~g~i~~~ 471 (576)
T PRK08611 409 TMGCGLPGAIAAKIAFP----D-----RQAIAICGDGGFS-MV-MQDFVTAVKYKLP------IVVVVLNNQQLAFIKYE 471 (576)
T ss_pred hhhhhHHHHHHHHHhCC----C-----CcEEEEEcccHHh-hh-HHHHHHHHHhCCC------eEEEEEeCCcchHHHHH
Confidence 37777788888887642 2 3479999999996 22 33333333 999 999988885 34310
Q ss_pred -CCCCCC-------Ccchhh--H---------HHHHHHHHHHHHHHccCCCEEEEEEeee
Q 002323 440 -DPRAGR-------SSQYCT--D---------AVVHVCELAAEWRQKFHSDVVVDLVCYR 480 (936)
Q Consensus 440 -~~~~~r-------ss~y~t--D---------AV~~a~~~A~e~rr~f~~pvlIdlv~YR 480 (936)
.....+ ...|.. . ...+..+.|++.+.+.++|+|||+.+-+
T Consensus 472 q~~~~~~~~~~~~~~~d~~~lA~a~G~~~~~v~~~~eL~~al~~a~~~~~p~lIeV~vd~ 531 (576)
T PRK08611 472 QQAAGELEYAIDLSDMDYAKFAEACGGKGYRVEKAEELDPAFEEALAQDKPVIIDVYVDP 531 (576)
T ss_pred HHHhcCCcccccCCCCCHHHHHHHCCCeEEEeCCHHHHHHHHHHHHhCCCCEEEEEEeCC
Confidence 000000 011110 0 2233345555555667899999999854
No 134
>PRK07418 acetolactate synthase 3 catalytic subunit; Reviewed
Probab=94.08 E-value=0.09 Score=64.18 Aligned_cols=54 Identities=24% Similarity=0.275 Sum_probs=38.5
Q ss_pred CCCccccceeechhHHHHHhcCCCCCCceEEEEEecCcccCCCchHHHhhhcc--CCCCCccccEEEEEEeCC
Q 002323 364 SHLEAVDPVVVGKTRAKQYYSHDVDRTKNMGVLIHGDGSFAGQGVVYETLHLS--ALPNYTTGGTIHIVVNNQ 434 (936)
Q Consensus 364 SHLeav~PVa~G~ArA~q~~~~d~~~~~~v~v~~hGDgA~sGQGvv~EtLNlA--~LP~Y~~GGtIhIV~NNQ 434 (936)
..+|...|-++|++.|. .+ .-+|++.|||+|. =...|=...+ +|| +|+||.||.
T Consensus 434 g~mG~glpaAiGA~lA~----p~-----r~Vv~i~GDG~f~--m~~~eL~Ta~r~~lp------vi~vV~NN~ 489 (616)
T PRK07418 434 GTMGFGMPAAMGVKVAL----PD-----EEVICIAGDASFL--MNIQELGTLAQYGIN------VKTVIINNG 489 (616)
T ss_pred cccccHHHHHHHHHHhC----CC-----CcEEEEEcchHhh--hhHHHHHHHHHhCCC------eEEEEEECC
Confidence 44777788888888774 22 3478999999996 2334432323 999 999999997
No 135
>PRK07789 acetolactate synthase 1 catalytic subunit; Validated
Probab=93.99 E-value=0.097 Score=63.86 Aligned_cols=58 Identities=21% Similarity=0.326 Sum_probs=38.2
Q ss_pred CCccccceeechhHHHHHhcCCCCCCceEEEEEecCcccCCCchHHHhhhccCCCCCccccEEEEEEeCC-ccc
Q 002323 365 HLEAVDPVVVGKTRAKQYYSHDVDRTKNMGVLIHGDGSFAGQGVVYETLHLSALPNYTTGGTIHIVVNNQ-VAF 437 (936)
Q Consensus 365 HLeav~PVa~G~ArA~q~~~~d~~~~~~v~v~~hGDgA~sGQGvv~EtLNlA~LP~Y~~GGtIhIV~NNQ-igf 437 (936)
.+|...|-++|++.|.. + .-+|++.|||+|.=.+-=.+|.---+|| +++||.||+ ||+
T Consensus 448 ~mG~glpaaiGa~la~p----~-----~~Vv~i~GDG~f~m~~~eL~Ta~~~~lp------v~ivV~NN~~~g~ 506 (612)
T PRK07789 448 TMGYAVPAAMGAKVGRP----D-----KEVWAIDGDGCFQMTNQELATCAIEGIP------IKVALINNGNLGM 506 (612)
T ss_pred cccchhhhHHhhhccCC----C-----CcEEEEEcchhhhccHHHHHHHHHcCCC------eEEEEEECCchHH
Confidence 47777888888888842 2 3477899999996111111222222899 888888887 553
No 136
>TIGR02177 PorB_KorB 2-oxoacid:acceptor oxidoreductase, beta subunit, pyruvate/2-ketoisovalerate family. Several related four-subunit enzymes may exist in the same species. This model describes a subfamily of beta subunits, representing mostly pyruvate and 2-ketoisovalerate specific enzymes.
Probab=93.74 E-value=0.13 Score=57.38 Aligned_cols=58 Identities=26% Similarity=0.300 Sum_probs=42.1
Q ss_pred CccccceeechhHHHHHhcCCCCCCceEEEEEecCcccCCCchHHHhhhcc--CCCCCccccEEEEEEeCCc-cccc
Q 002323 366 LEAVDPVVVGKTRAKQYYSHDVDRTKNMGVLIHGDGSFAGQGVVYETLHLS--ALPNYTTGGTIHIVVNNQV-AFTT 439 (936)
Q Consensus 366 Leav~PVa~G~ArA~q~~~~d~~~~~~v~v~~hGDgA~sGQGvv~EtLNlA--~LP~Y~~GGtIhIV~NNQi-gfTT 439 (936)
.|...|+|+|+.+|.. + .-+|++.|||++-+-| ..|-+..+ ++| +++||.||+. |.|.
T Consensus 55 mG~alPaAiGaklA~P----d-----~~VVai~GDG~f~~mg-~~eL~tA~r~nl~------I~vIVlNN~~yGmt~ 115 (287)
T TIGR02177 55 HGRALPVATGIKLANP----H-----LKVIVVGGDGDLYGIG-GNHFVAAGRRNVD------ITVIVHDNQVYGLTK 115 (287)
T ss_pred cccHHHHHHHHHHHCC----C-----CcEEEEeCchHHHhcc-HHHHHHHHHhCcC------eEEEEEECHHHHhhh
Confidence 4888999999988853 2 4579999999964233 34444444 999 9999999975 5543
No 137
>cd03376 TPP_PFOR_porB_like Thiamine pyrophosphate (TPP family), PFOR porB-like subfamily, TPP-binding module; composed of proteins similar to the beta subunit (porB) of the Helicobacter pylori four-subunit pyruvate ferredoxin oxidoreductase (PFOR), which are also found in archaea and some hyperthermophilic bacteria. PFOR catalyzes the oxidative decarboxylation of pyruvate to form acetyl-CoA, a crucial step in many metabolic pathways. Archaea, anaerobic bacteria and eukaryotes that lack mitochondria (and therefore pyruvate dehydrogenase) use PFOR to oxidatively decarboxylate pyruvate, with ferredoxin or flavodoxin as the electron acceptor. The 36-kDa porB subunit contains the binding sites for the cofactors, TPP and a divalent metal cation, which are required for activity.
Probab=93.67 E-value=0.17 Score=54.71 Aligned_cols=39 Identities=18% Similarity=0.050 Sum_probs=28.2
Q ss_pred eEEEEEecCcccCCCchHHHhhhcc--CCCCCccccEEEEEEeCCc-cc
Q 002323 392 NMGVLIHGDGSFAGQGVVYETLHLS--ALPNYTTGGTIHIVVNNQV-AF 437 (936)
Q Consensus 392 ~v~v~~hGDgA~sGQGvv~EtLNlA--~LP~Y~~GGtIhIV~NNQi-gf 437 (936)
.-+|++.|||++. +=-+.|-..++ ++| +++||.||+. |.
T Consensus 81 r~VV~i~GDG~~~-~m~~~eL~ta~~~~~p------v~~vVlNN~~yg~ 122 (235)
T cd03376 81 ITVVAFAGDGGTA-DIGFQALSGAAERGHD------ILYICYDNEAYMN 122 (235)
T ss_pred CeEEEEEcCchHH-hhHHHHHHHHHHcCCC------eEEEEECCccccc
Confidence 4589999999963 22245544444 999 9999999984 63
No 138
>PRK08978 acetolactate synthase 2 catalytic subunit; Reviewed
Probab=93.19 E-value=0.068 Score=64.14 Aligned_cols=54 Identities=28% Similarity=0.405 Sum_probs=37.9
Q ss_pred CCCccccceeechhHHHHHhcCCCCCCceEEEEEecCcccCCCchHHHhhhcc--CCCCCccccEEEEEEeCC
Q 002323 364 SHLEAVDPVVVGKTRAKQYYSHDVDRTKNMGVLIHGDGSFAGQGVVYETLHLS--ALPNYTTGGTIHIVVNNQ 434 (936)
Q Consensus 364 SHLeav~PVa~G~ArA~q~~~~d~~~~~~v~v~~hGDgA~sGQGvv~EtLNlA--~LP~Y~~GGtIhIV~NNQ 434 (936)
..+|...|-|+|++.|.- + .-+|++.|||+|. =...|-.... ++| +++||.||+
T Consensus 401 g~mG~glpaAiGa~la~p----~-----~~vv~i~GDG~f~--~~~~eL~ta~~~~l~------v~ivV~NN~ 456 (548)
T PRK08978 401 GTMGFGLPAAIGAQVARP----D-----DTVICVSGDGSFM--MNVQELGTIKRKQLP------VKIVLLDNQ 456 (548)
T ss_pred hhhhchHHHHHHHHHhCC----C-----CcEEEEEccchhh--ccHHHHHHHHHhCCC------eEEEEEeCC
Confidence 347777888888888742 2 3468999999996 2234433333 999 999988885
No 139
>PRK08322 acetolactate synthase; Reviewed
Probab=93.17 E-value=0.091 Score=62.98 Aligned_cols=54 Identities=20% Similarity=0.292 Sum_probs=38.1
Q ss_pred CccccceeechhHHHHHhcCCCCCCceEEEEEecCcccCCCchHHHhhhcc--CCCCCccccEEEEEEeCC-cc
Q 002323 366 LEAVDPVVVGKTRAKQYYSHDVDRTKNMGVLIHGDGSFAGQGVVYETLHLS--ALPNYTTGGTIHIVVNNQ-VA 436 (936)
Q Consensus 366 Leav~PVa~G~ArA~q~~~~d~~~~~~v~v~~hGDgA~sGQGvv~EtLNlA--~LP~Y~~GGtIhIV~NNQ-ig 436 (936)
+|...|-++|++.|.. + .-+|++.|||+|- =...|-.... ++| +++||.||+ ||
T Consensus 408 mG~~lpaaiGa~la~p----~-----~~vv~i~GDGsf~--m~~~eL~Ta~~~~lp------v~iiV~NN~~~g 464 (547)
T PRK08322 408 MGAGLPSAIAAKLVHP----D-----RKVLAVCGDGGFM--MNSQELETAVRLGLP------LVVLILNDNAYG 464 (547)
T ss_pred ccchhHHHHHHHHhCC----C-----CcEEEEEcchhHh--ccHHHHHHHHHhCCC------eEEEEEeCCCcc
Confidence 7788888999888742 2 3478999999995 2234433333 899 888888876 44
No 140
>TIGR03336 IOR_alpha indolepyruvate ferredoxin oxidoreductase, alpha subunit. Indolepyruvate ferredoxin oxidoreductase (IOR) is an alpha 2/beta 2 tetramer related to ketoacid oxidoreductases for pyruvate (1.2.7.1, POR), 2-ketoglutarate (1.2.7.3, KOR), and 2-oxoisovalerate (1.2.7.7, VOR). These multi-subunit enzymes typically are found in anaerobes and are inactiviated by oxygen. IOR in Pyrococcus acts in fermentation of all three aromatic amino acids, following removal of the amino group by transamination. In Methanococcus maripaludis, by contrast, IOR acts in the opposite direction, in pathways of amino acid biosynthesis from phenylacetate, indoleacetate, and p-hydroxyphenylacetate. In M. maripaludis and many other species, iorA and iorB are found next to an apparent phenylacetate-CoA ligase.
Probab=92.78 E-value=0.13 Score=62.64 Aligned_cols=59 Identities=19% Similarity=0.202 Sum_probs=44.4
Q ss_pred CCCccccceeechhHHHHHhcCCCCCCceEEEEEecCcccCCCchHHHhhhcc--CCCCCccccEEEEEEeCC-cccc
Q 002323 364 SHLEAVDPVVVGKTRAKQYYSHDVDRTKNMGVLIHGDGSFAGQGVVYETLHLS--ALPNYTTGGTIHIVVNNQ-VAFT 438 (936)
Q Consensus 364 SHLeav~PVa~G~ArA~q~~~~d~~~~~~v~v~~hGDgA~sGQGvv~EtLNlA--~LP~Y~~GGtIhIV~NNQ-igfT 438 (936)
..+|...|.++|++.|.. + .-+|++.|||+|. .....|-.+.. ++| +++||.||+ ||++
T Consensus 403 ~~mG~~~~~AiGa~~a~p----~-----~~Vv~i~GDG~f~-~~g~~eL~tav~~~~~------i~~vVlnN~~~g~~ 464 (595)
T TIGR03336 403 LCMGASIGVASGLSKAGE----K-----QRIVAFIGDSTFF-HTGIPGLINAVYNKAN------ITVVILDNRITAMT 464 (595)
T ss_pred eccCchHHHHhhhhhcCC----C-----CCEEEEeccchhh-hcCHHHHHHHHHcCCC------eEEEEEcCcceecc
Confidence 569999999999998842 1 3479999999996 33355555554 899 999999994 5554
No 141
>TIGR03394 indol_phenyl_DC indolepyruvate/phenylpyruvate decarboxylase, Azospirillum family. A family of closely related, thiamine pyrophosphate-dependent enzymes includes indolepyruvate decarboxylase (EC 4.1.1.74), phenylpyruvate decarboxylase (EC 4.1.1.43), pyruvate decarboxylase (EC 4.1.1.1), branched-chain alpha-ketoacid decarboxylase, etc.. Members of this group of homologs may overlap in specificity. This model represents a clade that includes a Azospirillum brasilense member active as both phenylpyruvate decarboxylase and indolepyruvate decarboxylase.
Probab=92.54 E-value=0.11 Score=62.40 Aligned_cols=53 Identities=21% Similarity=0.298 Sum_probs=38.3
Q ss_pred CCCccccceeechhHHHHHhcCCCCCCceEEEEEecCcccCCCchHHHhhhcc--CCCCCccccEEEEEEeCC
Q 002323 364 SHLEAVDPVVVGKTRAKQYYSHDVDRTKNMGVLIHGDGSFAGQGVVYETLHLS--ALPNYTTGGTIHIVVNNQ 434 (936)
Q Consensus 364 SHLeav~PVa~G~ArA~q~~~~d~~~~~~v~v~~hGDgA~sGQGvv~EtLNlA--~LP~Y~~GGtIhIV~NNQ 434 (936)
..+|...|-++|++.|. .+ .+ |++.|||||. =..+|=..++ +|| +++||.||.
T Consensus 403 g~mG~glpaaiGa~lA~----~~-----r~-v~i~GDG~f~--m~~~EL~Ta~r~~lp------v~~vV~NN~ 457 (535)
T TIGR03394 403 AGMGFGVPAGIGAQCTS----GK-----RI-LTLVGDGAFQ--MTGWELGNCRRLGID------PIVILFNNA 457 (535)
T ss_pred chhhhHHHHHHHHHhCC----CC-----Ce-EEEEeChHHH--hHHHHHHHHHHcCCC------cEEEEEECC
Confidence 45888889999998884 11 23 6689999995 3344444444 999 999999996
No 142
>KOG1185 consensus Thiamine pyrophosphate-requiring enzyme [Amino acid transport and metabolism; Coenzyme transport and metabolism]
Probab=92.22 E-value=0.7 Score=54.48 Aligned_cols=53 Identities=28% Similarity=0.283 Sum_probs=42.2
Q ss_pred cceeechhHHHHHhcCCCCCCceEEEEEecCcccCCCchHHHhhhccCCCCCccccEEEEEEeC
Q 002323 370 DPVVVGKTRAKQYYSHDVDRTKNMGVLIHGDGSFAGQGVVYETLHLSALPNYTTGGTIHIVVNN 433 (936)
Q Consensus 370 ~PVa~G~ArA~q~~~~d~~~~~~v~v~~hGDgA~sGQGvv~EtLNlA~LP~Y~~GGtIhIV~NN 433 (936)
..|..|-|.|.+.-..+ .-++|+.||+||.=-+.=.||+---+|| +|-||.||
T Consensus 432 MGVG~Gfalaaa~~~P~-----~~V~~veGDsaFGfSaME~ET~vR~~Lp------vv~vV~NN 484 (571)
T KOG1185|consen 432 MGVGLGFALAAALAAPD-----RKVVCVEGDSAFGFSAMELETFVRYKLP------VVIVVGNN 484 (571)
T ss_pred cccchhHHHHHHhhCCC-----CeEEEEecCcccCcchhhHHHHHHhcCC------eEEEEecC
Confidence 34566777777776654 6789999999998667777887777999 99999977
No 143
>COG3957 Phosphoketolase [Carbohydrate transport and metabolism]
Probab=92.12 E-value=1.2 Score=54.59 Aligned_cols=120 Identities=22% Similarity=0.317 Sum_probs=70.7
Q ss_pred ceEEEccCcchhHHHHHHhhhccCCCCcceeeeccchhhhhhHHHHHHHHHhhhhhhhc---------Cc-cccEEEcC-
Q 002323 680 MFTVSNSSLSEFGVLGFELGYSMENPNSLVLWEAQFGDFANGAQVIFDQFLSSGESKWL---------RQ-TGLVVLLP- 748 (936)
Q Consensus 680 ~~rV~nspLSE~avlG~e~G~sl~g~~~LviwEaqFgDF~n~Aq~iidqfi~~~~~kw~---------~~-s~lv~~lP- 748 (936)
.-||+. +|||.++.|+.-||++.|-..|. +-|=-|+ .|+|..++ ...||. +. .++.+++-
T Consensus 460 ~GRV~e-~LSEh~c~Gwlegy~LtGr~glf---~sYEaF~----~iv~sm~n-Qh~kwl~v~~e~~wr~~~~Sln~l~TS 530 (793)
T COG3957 460 DGRVME-VLSEHACQGWLEGYLLTGRHGLF---ASYEAFA----HIVDSMFN-QHAKWLKVTREVEWRRPIPSLNYLLTS 530 (793)
T ss_pred Cceeeh-hhcHHHHHHHHHHHHhcCCccce---eeHHHHH----HHHHHHHh-hhHHHHHHHHhcccCCCCCcccceeeh
Confidence 458988 99999999999999999998842 1222243 35565553 335554 32 23555544
Q ss_pred ccCC--CCCccccCchhhhhhhcCCCCCCcccCCCchhhhhccccceEEEEcCCHHHHHHHHHHHHhcCCCCcEEEEccc
Q 002323 749 HGYD--GQGPEHSSARLERFLQMSDDNPFVIPEMDPTLRKQIQECNWQIVNVTTPANYFHVLRRQIHRGFRKPLIVISPK 826 (936)
Q Consensus 749 hG~~--G~GpeHSs~RiERfLQl~~~~~~~~~~~pg~~~~~~~~~N~~Vv~pstpa~~fhlLrrq~~r~~~~Pli~~~pK 826 (936)
|=++ --|=.|-.-.++-++. + ....+++|+.|-..--.--+.=++++ ..++=-+|..+|
T Consensus 531 ~vw~QdhNGfsHQdPgf~~~~~--~----------------k~~d~vRvyfPpDaNtlLav~d~~l~-s~n~in~iVa~K 591 (793)
T COG3957 531 HVWRQDHNGFSHQDPGFIDHVA--N----------------KKSDIVRVYFPPDANTLLAVYDHCLR-SRNKINVIVASK 591 (793)
T ss_pred hhhhcccCCCccCCchHHHHHH--h----------------hccCceeEecCCCCcchhhhhhHHhh-ccCceEEEEecC
Confidence 4442 2366676665554332 1 12237888888665444445555555 244445556676
Q ss_pred c
Q 002323 827 N 827 (936)
Q Consensus 827 ~ 827 (936)
.
T Consensus 592 ~ 592 (793)
T COG3957 592 Q 592 (793)
T ss_pred C
Confidence 5
No 144
>PRK06965 acetolactate synthase 3 catalytic subunit; Validated
Probab=91.25 E-value=0.48 Score=57.62 Aligned_cols=56 Identities=25% Similarity=0.189 Sum_probs=39.5
Q ss_pred CCCccccceeechhHHHHHhcCCCCCCceEEEEEecCcccCCCchHHHhhhccCCCCCccccEEEEEEeCC
Q 002323 364 SHLEAVDPVVVGKTRAKQYYSHDVDRTKNMGVLIHGDGSFAGQGVVYETLHLSALPNYTTGGTIHIVVNNQ 434 (936)
Q Consensus 364 SHLeav~PVa~G~ArA~q~~~~d~~~~~~v~v~~hGDgA~sGQGvv~EtLNlA~LP~Y~~GGtIhIV~NNQ 434 (936)
+.+|...|-++|++.|.. + .-+|++.|||+|.=.+-=.+|..--+|| +++||.||+
T Consensus 437 gsmG~glpaaiGa~lA~p----~-----r~Vv~i~GDGsf~m~~~eL~Ta~r~~lp------viivV~NN~ 492 (587)
T PRK06965 437 GTMGVGLPYAMGIKMAHP----D-----DDVVCITGEGSIQMCIQELSTCLQYDTP------VKIISLNNR 492 (587)
T ss_pred ccccchHHHHHHHHHhCC----C-----CcEEEEEcchhhhcCHHHHHHHHHcCCC------eEEEEEECC
Confidence 347888888999988852 2 3588999999996222122222223999 999999998
No 145
>TIGR03336 IOR_alpha indolepyruvate ferredoxin oxidoreductase, alpha subunit. Indolepyruvate ferredoxin oxidoreductase (IOR) is an alpha 2/beta 2 tetramer related to ketoacid oxidoreductases for pyruvate (1.2.7.1, POR), 2-ketoglutarate (1.2.7.3, KOR), and 2-oxoisovalerate (1.2.7.7, VOR). These multi-subunit enzymes typically are found in anaerobes and are inactiviated by oxygen. IOR in Pyrococcus acts in fermentation of all three aromatic amino acids, following removal of the amino group by transamination. In Methanococcus maripaludis, by contrast, IOR acts in the opposite direction, in pathways of amino acid biosynthesis from phenylacetate, indoleacetate, and p-hydroxyphenylacetate. In M. maripaludis and many other species, iorA and iorB are found next to an apparent phenylacetate-CoA ligase.
Probab=91.16 E-value=2.1 Score=52.39 Aligned_cols=113 Identities=17% Similarity=0.179 Sum_probs=74.5
Q ss_pred chhHHHHHHhhhccCCCCcceeeeccchhhhhhHHHHHHHHHhhhhhhhcCccccEEEcCccCCCCCccccCchhhhhhh
Q 002323 689 SEFGVLGFELGYSMENPNSLVLWEAQFGDFANGAQVIFDQFLSSGESKWLRQTGLVVLLPHGYDGQGPEHSSARLERFLQ 768 (936)
Q Consensus 689 SE~avlG~e~G~sl~g~~~LviwEaqFgDF~n~Aq~iidqfi~~~~~kw~~~s~lv~~lPhG~~G~GpeHSs~RiERfLQ 768 (936)
+|.+.+...+|.|++|-|++|.+=.+ | .| ...|.+...+ .-+...|+|+.+-.+ .||- |+ +-|-
T Consensus 54 ~E~~a~~~~~GAs~aG~ra~t~ts~~-G--l~---~~~e~l~~~~--~~g~~~~iV~~~~~~---~gp~-~~-~~~q--- 117 (595)
T TIGR03336 54 NEKVAVEVAAGAAWSGLRAFCTMKHV-G--LN---VAADPLMTLA--YTGVKGGLVVVVADD---PSMH-SS-QNEQ--- 117 (595)
T ss_pred CHHHHHHHHHHHHhcCcceEEEccCC-c--hh---hhHHHhhhhh--hhcCcCceEEEEccC---CCCc-cc-hhhH---
Confidence 89999999999999999997665421 1 22 2346655422 112357888877644 3332 22 1210
Q ss_pred cCCCCCCcccCCCchhhhhccccceEEEEcCCHHHHHHHHHHHHh--cCCCCcEEEEccccccCC
Q 002323 769 MSDDNPFVIPEMDPTLRKQIQECNWQIVNVTTPANYFHVLRRQIH--RGFRKPLIVISPKNLLRH 831 (936)
Q Consensus 769 l~~~~~~~~~~~pg~~~~~~~~~N~~Vv~pstpa~~fhlLrrq~~--r~~~~Pli~~~pK~Llr~ 831 (936)
++ .+| ..+..|-|..|+|+.++|.+.+.+.. ..++-||+++..+.|-..
T Consensus 118 --~d--~~~----------~~~~~~~vl~p~~~qE~~d~~~~Af~lae~~~~PV~v~~d~~l~h~ 168 (595)
T TIGR03336 118 --DT--RHY----------AKFAKIPCLEPSTPQEAKDMVKYAFELSEKFGLPVILRPTTRISHM 168 (595)
T ss_pred --hH--HHH----------HHhcCCeEECCCCHHHHHHHHHHHHHHHHHHCCCEEEEEeeeeccc
Confidence 00 111 12234889999999999999999886 569999999999866543
No 146
>COG3961 Pyruvate decarboxylase and related thiamine pyrophosphate-requiring enzymes [Carbohydrate transport and metabolism / Coenzyme metabolism / General function prediction only]
Probab=90.79 E-value=0.33 Score=57.53 Aligned_cols=58 Identities=29% Similarity=0.346 Sum_probs=42.8
Q ss_pred CCCccccceeechhHHHHHhcCCCCCCceEEEEEecCcccCCCchHHHhhhcc--CCCCCccccEEEEEEeCCccccc
Q 002323 364 SHLEAVDPVVVGKTRAKQYYSHDVDRTKNMGVLIHGDGSFAGQGVVYETLHLS--ALPNYTTGGTIHIVVNNQVAFTT 439 (936)
Q Consensus 364 SHLeav~PVa~G~ArA~q~~~~d~~~~~~v~v~~hGDgA~sGQGvv~EtLNlA--~LP~Y~~GGtIhIV~NNQigfTT 439 (936)
-|+|-..|-++|++.|.+++ =+|+|.||||+ |=.|+|-=.|- +|| .+.+|.||+ |+|.
T Consensus 411 GSIG~t~pAalGa~~A~~dr---------R~IL~iGDGs~--QlTvQEiStmiR~gl~------p~ifvlNN~-GYTI 470 (557)
T COG3961 411 GSIGYTLPAALGAALAAPDR---------RVILFIGDGSL--QLTVQEISTMIRWGLK------PIIFVLNND-GYTI 470 (557)
T ss_pred hhcccccHhhhhhhhcCCCc---------cEEEEEcCchh--hhhHHHHHHHHHcCCC------cEEEEEcCC-CcEE
Confidence 45788888899999998764 37999999998 88889876666 666 555555553 4443
No 147
>PF01855 POR_N: Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg; InterPro: IPR002880 This family includes the N-terminal region of the pyruvate ferredoxin oxidoreductase, corresponding to the first two structural domains. This region is involved in inter subunit contacts []. Pyruvate oxidoreductase (POR) catalyses the final step in the fermentation of carbohydrates in anaerobic microorganisms []. This involves the oxidative decarboxylation of pyruvate with the participation of thiamine followed by the transfer of an acetyl moiety to coenzyme A for the synthesis of acetyl-CoA []. The family also includes pyruvate flavodoxin oxidoreductase as encoded by the nifJ gene in cyanobacterium which is required for growth on molecular nitrogen when iron is limited [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2PDA_B 2C3Y_A 2C3P_B 2UZA_A 2C3U_B 2C42_A 1B0P_B 2C3M_A 2C3O_B 1KEK_B ....
Probab=90.01 E-value=0.61 Score=50.46 Aligned_cols=112 Identities=13% Similarity=0.238 Sum_probs=66.7
Q ss_pred CcchhHHHHHHhhhccCCCCcceeeeccchhhhhhHHHHHHHHHhhhhhhhcCccccEEEcCcc-CCCC----CccccCc
Q 002323 687 SLSEFGVLGFELGYSMENPNSLVLWEAQFGDFANGAQVIFDQFLSSGESKWLRQTGLVVLLPHG-YDGQ----GPEHSSA 761 (936)
Q Consensus 687 pLSE~avlG~e~G~sl~g~~~LviwEaqFgDF~n~Aq~iidqfi~~~~~kw~~~s~lv~~lPhG-~~G~----GpeHSs~ 761 (936)
.-||-+.++..+|+|++|-|.+|..=-|=-. ...+.+...+ +.+.|+||.+-.= ..+. .++|+..
T Consensus 42 ~E~E~~A~~~~~GAs~aG~ra~t~ts~~Gl~------lm~e~l~~a~----~~~~P~V~~~~~R~g~~~g~~~~~~q~D~ 111 (230)
T PF01855_consen 42 AESEHAAMEAAIGASAAGARAMTATSGPGLN------LMAEPLYWAA----GTELPIVIVVVQRAGPSPGLSTQPEQDDL 111 (230)
T ss_dssp -SSHHHHHHHHHHHHHTT--EEEEEECCHHH------HHCCCHHHHH----HTT--EEEEEEEB---SSSB--SB-SHHH
T ss_pred ecchHHHHHHHHHHHhcCCceEEeecCCccc------ccHhHHHHHH----HcCCCEEEEEEECCCCCCCCcCcCChhHH
Confidence 5689999999999999999997653332111 1123332211 2356888775431 1222 2344433
Q ss_pred hhhhhhhcCCCCCCcccCCCchhhhhccccceEEEEcCCHHHHHHHHHHHHh--cCCCCcEEEEccccccCCC
Q 002323 762 RLERFLQMSDDNPFVIPEMDPTLRKQIQECNWQIVNVTTPANYFHVLRRQIH--RGFRKPLIVISPKNLLRHK 832 (936)
Q Consensus 762 RiERfLQl~~~~~~~~~~~pg~~~~~~~~~N~~Vv~pstpa~~fhlLrrq~~--r~~~~Pli~~~pK~Llr~~ 832 (936)
.+.++.+|.|+.|+|+.++|.+.+.+.+ .+++.|||++..+.+.-|-
T Consensus 112 ------------------------~~~~d~~~~vl~p~~~QEa~d~~~~A~~lAe~~~~PViv~~Dg~~~sh~ 160 (230)
T PF01855_consen 112 ------------------------MAARDSGWIVLAPSSPQEAYDMTLIAFNLAEKYQTPVIVLFDGFLCSHS 160 (230)
T ss_dssp ------------------------HHTTTSS-EEEE--SHHHHHHHHHHHHHHHHHHTSEEEEEEECCCCTC-
T ss_pred ------------------------HHHHhcCeEEEeCCCHHHHHHHHHHHHHHHHHHCCCEEEEechhhhcCc
Confidence 2223467999999999999999888765 6699999999999998443
No 148
>PLN02980 2-oxoglutarate decarboxylase/ hydro-lyase/ magnesium ion binding / thiamin pyrophosphate binding
Probab=89.60 E-value=0.47 Score=64.41 Aligned_cols=52 Identities=21% Similarity=0.190 Sum_probs=37.4
Q ss_pred ccccceeechhHHHHHhcCCCCCCceEEEEEecCcccCCCchHHHhhhcc----CCCCCccccEEEEEEeCCcc
Q 002323 367 EAVDPVVVGKTRAKQYYSHDVDRTKNMGVLIHGDGSFAGQGVVYETLHLS----ALPNYTTGGTIHIVVNNQVA 436 (936)
Q Consensus 367 eav~PVa~G~ArA~q~~~~d~~~~~~v~v~~hGDgA~sGQGvv~EtLNlA----~LP~Y~~GGtIhIV~NNQig 436 (936)
++..|-|+|++.|. + .-+|++.|||+|. =...|=..++ +|| +++||.||+-|
T Consensus 764 ~G~lpaAIGaala~-----~-----r~Vv~i~GDGsF~--m~~~EL~Ta~r~~~~lp------i~iVV~NN~gg 819 (1655)
T PLN02980 764 DGLLSTAIGFAVGC-----N-----KRVLCVVGDISFL--HDTNGLSILSQRIARKP------MTILVINNHGG 819 (1655)
T ss_pred hhhHHHHHHHhhcC-----C-----CCEEEEEehHHHH--hhhhHHHHhhcccCCCC------EEEEEEeCCCc
Confidence 33689999998875 2 2478899999994 3344433332 689 99999999954
No 149
>PRK08366 vorA 2-ketoisovalerate ferredoxin oxidoreductase subunit alpha; Reviewed
Probab=85.50 E-value=3.3 Score=48.32 Aligned_cols=115 Identities=11% Similarity=0.150 Sum_probs=75.6
Q ss_pred CcchhHHHHHHhhhccCCCCcceeeeccchhhhhhHHHHHHHHHhhhhhhhcCccccEEEcCc-cCCCC---CccccCch
Q 002323 687 SLSEFGVLGFELGYSMENPNSLVLWEAQFGDFANGAQVIFDQFLSSGESKWLRQTGLVVLLPH-GYDGQ---GPEHSSAR 762 (936)
Q Consensus 687 pLSE~avlG~e~G~sl~g~~~LviwEaqFgDF~n~Aq~iidqfi~~~~~kw~~~s~lv~~lPh-G~~G~---GpeHSs~R 762 (936)
.=||.+.++.++|+|++|-|++|-.=-| -|. .+.+.+...+- ...|+|+..-. +..+. .++|+..
T Consensus 55 ~E~E~aA~~~aiGAs~aGaRa~TaTSg~--Gl~----lm~E~l~~aa~----~~lPiVi~~~~R~~p~~~~~~~~q~D~- 123 (390)
T PRK08366 55 VESEHSAMAACIGASAAGARAFTATSAQ--GLA----LMHEMLHWAAG----ARLPIVMVDVNRAMAPPWSVWDDQTDS- 123 (390)
T ss_pred eCCHHHHHHHHHHHHhhCCCeEeeeCcc--cHH----HHhhHHHHHHh----cCCCEEEEEeccCCCCCCCCcchhhHH-
Confidence 3489999999999999999996543221 121 23344432221 25788765421 11122 2334432
Q ss_pred hhhhhhcCCCCCCcccCCCchhhhhccccceEEEEcCCHHHHHHHHHHHHh--cCCCCcEEEEccccccCCCCCC
Q 002323 763 LERFLQMSDDNPFVIPEMDPTLRKQIQECNWQIVNVTTPANYFHVLRRQIH--RGFRKPLIVISPKNLLRHKDCK 835 (936)
Q Consensus 763 iERfLQl~~~~~~~~~~~pg~~~~~~~~~N~~Vv~pstpa~~fhlLrrq~~--r~~~~Pli~~~pK~Llr~~~~~ 835 (936)
.+.++.+|.++.|+|+.++|.+...+.. .+++-|+|++..+.++-|-...
T Consensus 124 -----------------------~~~~d~g~i~~~~~~~QEa~d~t~~Af~lAE~~~~PViv~~Dg~~~sh~~~~ 175 (390)
T PRK08366 124 -----------------------LAQRDTGWMQFYAENNQEVYDGVLMAFKVAETVNLPAMVVESAFILSHTYDV 175 (390)
T ss_pred -----------------------HHHhhcCEEEEeCCCHHHHHHHHHHHHHHHHHHCCCEEEEecCccccccccc
Confidence 1223446999999999999999998876 4689999999999888765553
No 150
>KOG1184 consensus Thiamine pyrophosphate-requiring enzyme [Amino acid transport and metabolism; Coenzyme transport and metabolism]
Probab=85.12 E-value=0.58 Score=55.42 Aligned_cols=57 Identities=28% Similarity=0.332 Sum_probs=45.5
Q ss_pred CCccccceeechhHHHHHhcCCCCCCceEEEEEecCcccCCCchHHHhhhcc--CCCCCccccEEEEEEeCCccccc
Q 002323 365 HLEAVDPVVVGKTRAKQYYSHDVDRTKNMGVLIHGDGSFAGQGVVYETLHLS--ALPNYTTGGTIHIVVNNQVAFTT 439 (936)
Q Consensus 365 HLeav~PVa~G~ArA~q~~~~d~~~~~~v~v~~hGDgA~sGQGvv~EtLNlA--~LP~Y~~GGtIhIV~NNQigfTT 439 (936)
|+|-..|-++|.|.|.+. .-+|+|.||||| |=.++|-..|. +|| ++.++.||+ |+|-
T Consensus 416 sIG~svga~lG~a~a~~e---------~rvilfiGDGs~--qlTvQeiStmir~gl~------~~if~~NN~-GYTI 474 (561)
T KOG1184|consen 416 SIGWSVGATLGYAQAAPE---------KRVILFIGDGSF--QLTVQEISTMIRWGLK------PIIFLINNG-GYTI 474 (561)
T ss_pred eccccchhhhhhhhccCC---------ceEEEEecCccc--eeeHHHHHHHHhcCCC------cEEEEEeCC-ceEE
Confidence 466777778888888765 468999999999 89999999998 888 777777776 5554
No 151
>COG1013 PorB Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, beta subunit [Energy production and conversion]
Probab=82.40 E-value=4.1 Score=45.85 Aligned_cols=136 Identities=15% Similarity=0.039 Sum_probs=74.5
Q ss_pred CccccceeechhHHHHHhcCCCCCCceEEEEEecCcccCCCchHHHhhhcc-CCCCCccccEEEEEEeCCcccccCCCCC
Q 002323 366 LEAVDPVVVGKTRAKQYYSHDVDRTKNMGVLIHGDGSFAGQGVVYETLHLS-ALPNYTTGGTIHIVVNNQVAFTTDPRAG 444 (936)
Q Consensus 366 Leav~PVa~G~ArA~q~~~~d~~~~~~v~v~~hGDgA~sGQGvv~EtLNlA-~LP~Y~~GGtIhIV~NNQigfTT~~~~~ 444 (936)
-|-..|+|.|..+|.+.. -+|++-|||...+-|.-|=.=.+. +.- +..||.||++=--|--..+
T Consensus 72 ~gra~a~atGik~A~~~l---------~Viv~gGDG~~~dIG~~~l~h~~~Rn~d------it~iv~DNevYgnTggQ~S 136 (294)
T COG1013 72 HGRAAAVATGIKLANPAL---------SVIVIGGDGDAYDIGGNHLIHALRRNHD------ITYIVVDNEVYGNTGGQAS 136 (294)
T ss_pred cCcchhhHHHHHHhccCC---------eEEEEecchhHhhhhhHHHHHHHHcCCC------eEEEEECCeecccCCCccC
Confidence 577788899999887643 688899999555466544222222 677 8999999986333322212
Q ss_pred CCcchh---------------hH------------------HHHHHHHHHHHHHHccCCCEEEEEEeeecCCCCCCC-CC
Q 002323 445 RSSQYC---------------TD------------------AVVHVCELAAEWRQKFHSDVVVDLVCYRRFGHNEID-EP 490 (936)
Q Consensus 445 rss~y~---------------tD------------------AV~~a~~~A~e~rr~f~~pvlIdlv~YRr~GHne~D-dp 490 (936)
-+|++. -| +-..=...++..+.+.+||.||++.+== ++.-+ .+
T Consensus 137 ~tTp~G~~t~t~p~Gk~~~~k~d~~~la~a~G~~yVAr~~~~~~~~l~~~i~kA~~~~Gps~I~v~sPC---~t~~~~~~ 213 (294)
T COG1013 137 PTTPKGAKTKTTPYGKRSEKKKDPGLLAMAAGATYVARASVGDPKDLTEKIKKAAEHKGPSFIDVLSPC---PTGNGRNT 213 (294)
T ss_pred CCCCCCceeeecCCCCCcCCCCCHHHHHHHCCCCeEEEecccCHHHHHHHHHHHHhccCCeEEEEecCC---CCCCCccc
Confidence 121111 12 1112223334444556799999997521 11112 12
Q ss_pred CCCCHHHHHHHHcCCCHHHHHHHHHHHcC
Q 002323 491 SFTQPKMYQVIRSHPSAFEIYQKKLLESA 519 (936)
Q Consensus 491 ~ytqp~~y~~i~~~~dpl~~y~~~Li~eG 519 (936)
.-+-.++..+.+..-+|+.+|.....+++
T Consensus 214 ~~~~~~~~~ave~g~~pl~~~~~~~~~~~ 242 (294)
T COG1013 214 MKTIEEAKLAVETGYWPLYRYEPGKAEEE 242 (294)
T ss_pred chHHHHHHHHHhcCCceeeeccCcchhhc
Confidence 22333344445545677777766444433
No 152
>PRK07119 2-ketoisovalerate ferredoxin reductase; Validated
Probab=82.40 E-value=4.1 Score=46.80 Aligned_cols=113 Identities=12% Similarity=0.151 Sum_probs=71.7
Q ss_pred CcchhHHHHHHhhhccCCCCcceeeeccchhhhhhHHHHHHHHHhhhhhhhc-CccccEEEcCccCCCCC-----ccccC
Q 002323 687 SLSEFGVLGFELGYSMENPNSLVLWEAQFGDFANGAQVIFDQFLSSGESKWL-RQTGLVVLLPHGYDGQG-----PEHSS 760 (936)
Q Consensus 687 pLSE~avlG~e~G~sl~g~~~LviwEaqFgDF~n~Aq~iidqfi~~~~~kw~-~~s~lv~~lPhG~~G~G-----peHSs 760 (936)
.=+|-+.++.++|+|++|-|++|..=-|.--+ ++ .+ + ..+. ...|+||.+-..- |.+ +||++
T Consensus 54 ~E~E~aA~~~a~GAs~aG~Ra~taTSg~Gl~l---m~---E~-l----~~a~~~e~P~v~v~v~R~-~p~~g~t~~eq~D 121 (352)
T PRK07119 54 AESEVAAINMVYGAAATGKRVMTSSSSPGISL---KQ---EG-I----SYLAGAELPCVIVNIMRG-GPGLGNIQPSQGD 121 (352)
T ss_pred eCcHHHHHHHHHHHHhhCCCEEeecCcchHHH---HH---HH-H----HHHHHccCCEEEEEeccC-CCCCCCCcchhHH
Confidence 67899999999999999999976641111111 11 11 1 1111 2578777654422 222 34442
Q ss_pred chhhhhhhcCCCCCCcccCCCchhhhhccccceEEEEcCCHHHHHHHHHHHHh--cCCCCcEEEEcccccc
Q 002323 761 ARLERFLQMSDDNPFVIPEMDPTLRKQIQECNWQIVNVTTPANYFHVLRRQIH--RGFRKPLIVISPKNLL 829 (936)
Q Consensus 761 ~RiERfLQl~~~~~~~~~~~pg~~~~~~~~~N~~Vv~pstpa~~fhlLrrq~~--r~~~~Pli~~~pK~Ll 829 (936)
- +.++-. . -|-+.+|.|..|+||.++|.+.+.+.+ .+++-|+|++..+.|-
T Consensus 122 ~----~~~~~~---------~-----ghgd~~~~vl~p~~~qEa~d~~~~Af~lAE~~~~PViv~~D~~ls 174 (352)
T PRK07119 122 Y----FQAVKG---------G-----GHGDYRLIVLAPSSVQEMVDLTMLAFDLADKYRNPVMVLGDGVLG 174 (352)
T ss_pred H----HHHHhc---------C-----CCCCcceEEEeCCCHHHHHHHHHHHHHHHHHhCCCEEEEcchhhh
Confidence 2 222100 0 122456999999999999999999886 4688999999999763
No 153
>TIGR03845 sulfopyru_alph sulfopyruvate decarboxylase, alpha subunit. This model represents the alpha subunit, or the N-terminal region, of sulfopyruvate decarboxylase, an enzyme of coenzyme M biosynthesis. Coenzyme M is found almost exclusively in the methanogenic archaea. However, the enzyme also occurs in Roseovarius nubinhibens ISM in a degradative pathway, where the resulting sulfoacetaldehyde is desulfonated to acetyl phosphate, then converted to acetyl-CoA (see PubMed:19581363).
Probab=81.19 E-value=8.7 Score=39.21 Aligned_cols=108 Identities=13% Similarity=0.117 Sum_probs=66.2
Q ss_pred CcchhHHHHHHhhhccCCCCcceeeeccchhhhhhHHHHHHHHHhhhhhhh-cCccccEEEcCccCCCCCcc----cc--
Q 002323 687 SLSEFGVLGFELGYSMENPNSLVLWEAQFGDFANGAQVIFDQFLSSGESKW-LRQTGLVVLLPHGYDGQGPE----HS-- 759 (936)
Q Consensus 687 pLSE~avlG~e~G~sl~g~~~LviwEaqFgDF~n~Aq~iidqfi~~~~~kw-~~~s~lv~~lPhG~~G~Gpe----HS-- 759 (936)
.-.|....|++.|+.+.+.++. +.=...| ..| .++.-..-+ ..+.|++++. |+.|..++ |.
T Consensus 40 ~~~ee~aa~~aAg~~~~~~~~~-v~~~~sG-~gn--------~~~~l~~a~~~~~~Pvl~i~--g~rg~~~~~~~~q~~~ 107 (157)
T TIGR03845 40 LTREEEGVGICAGAYLAGKKPA-ILMQSSG-LGN--------SINALASLNKTYGIPLPILA--SWRGVYKEKIPAQIPM 107 (157)
T ss_pred cCChHHHHHHHHHHHHhcCCcE-EEEeCCc-HHH--------HHHHHHHHHHcCCCCEEEEE--eccCCCCCCCccccch
Confidence 4567778889998888877774 4334444 333 222222223 4578998886 33222111 11
Q ss_pred CchhhhhhhcCCCCCCcccCCCchhhhhccccceEEEEcCCHHHHHHHHHHHHh--cCCCCcEEEEccccc
Q 002323 760 SARLERFLQMSDDNPFVIPEMDPTLRKQIQECNWQIVNVTTPANYFHVLRRQIH--RGFRKPLIVISPKNL 828 (936)
Q Consensus 760 s~RiERfLQl~~~~~~~~~~~pg~~~~~~~~~N~~Vv~pstpa~~fhlLrrq~~--r~~~~Pli~~~pK~L 828 (936)
..-.|..||.+ ++.....++|+|+ ..+.++++ ...++|+.++-+|.+
T Consensus 108 g~~~~~~l~~~---------------------~i~~~~i~~~e~~-~~i~~A~~~a~~~~gPv~il~~~~~ 156 (157)
T TIGR03845 108 GRATPKLLDTL---------------------GIPYTIPREPEEA-KLIEKAISDAYENSRPVAALLDPKY 156 (157)
T ss_pred hhhhHHHHHHc---------------------CCCeEEeCCHHHH-HHHHHHHHHHHhCCCCEEEEEeCCc
Confidence 11133344433 3456667889999 99999986 456799999999876
No 154
>PRK09622 porA pyruvate flavodoxin oxidoreductase subunit alpha; Reviewed
Probab=80.58 E-value=5.4 Score=46.74 Aligned_cols=109 Identities=16% Similarity=0.179 Sum_probs=74.0
Q ss_pred chhHHHHHHhhhccCCCCcceeeeccchhhhhhHHHHHHHHHhhhhhhhcCccccEEEcCccCCCC----CccccCchhh
Q 002323 689 SEFGVLGFELGYSMENPNSLVLWEAQFGDFANGAQVIFDQFLSSGESKWLRQTGLVVLLPHGYDGQ----GPEHSSARLE 764 (936)
Q Consensus 689 SE~avlG~e~G~sl~g~~~LviwEaqFgDF~n~Aq~iidqfi~~~~~kw~~~s~lv~~lPhG~~G~----GpeHSs~RiE 764 (936)
||.+.++..+|+|++|-|++|..=-| |--.+.+.+...+ +...|+||..-.+..+. -++|+..
T Consensus 64 ~E~~A~~~~~GAs~aGaRa~TaTS~~------Gl~lm~E~l~~aa----~~~~P~V~~~~~R~~~~~~~i~~d~~D~--- 130 (407)
T PRK09622 64 SEHAAMSACVGAAAAGGRVATATSSQ------GLALMVEVLYQAS----GMRLPIVLNLVNRALAAPLNVNGDHSDM--- 130 (407)
T ss_pred cHHHHHHHHHHHHhhCcCEEeecCcc------hHHHHhhHHHHHH----HhhCCEEEEEeccccCCCcCCCchHHHH---
Confidence 89999999999999999996543221 1112344443222 23578888766544211 1223222
Q ss_pred hhhhcCCCCCCcccCCCchhhhhccccceEEEEcCCHHHHHHHHHHHHhc--CC--CCcEEEEccccccCC
Q 002323 765 RFLQMSDDNPFVIPEMDPTLRKQIQECNWQIVNVTTPANYFHVLRRQIHR--GF--RKPLIVISPKNLLRH 831 (936)
Q Consensus 765 RfLQl~~~~~~~~~~~pg~~~~~~~~~N~~Vv~pstpa~~fhlLrrq~~r--~~--~~Pli~~~pK~Llr~ 831 (936)
.+.++.+|.|+.|+|+.++|.+...+..- ++ +.|++++....++-|
T Consensus 131 ---------------------~~~r~~g~ivl~p~s~QEa~d~~~~Af~lAE~~~~~~Pviv~~Dg~~~sh 180 (407)
T PRK09622 131 ---------------------YLSRDSGWISLCTCNPQEAYDFTLMAFKIAEDQKVRLPVIVNQDGFLCSH 180 (407)
T ss_pred ---------------------HHHhcCCeEEEeCCCHHHHHHHHHHHHHHHHHhccCCCEEEEechhhhhC
Confidence 12234569999999999999999998873 44 899999999998666
No 155
>PRK08367 porA pyruvate ferredoxin oxidoreductase subunit alpha; Reviewed
Probab=78.99 E-value=7.6 Score=45.43 Aligned_cols=111 Identities=11% Similarity=0.102 Sum_probs=72.7
Q ss_pred cchhHHHHHHhhhccCCCCcceeeeccchhhhhhHHHHHHHHHhhhhhhhcCccccEEEcC--ccCCCC--CccccCchh
Q 002323 688 LSEFGVLGFELGYSMENPNSLVLWEAQFGDFANGAQVIFDQFLSSGESKWLRQTGLVVLLP--HGYDGQ--GPEHSSARL 763 (936)
Q Consensus 688 LSE~avlG~e~G~sl~g~~~LviwEaqFgDF~n~Aq~iidqfi~~~~~kw~~~s~lv~~lP--hG~~G~--GpeHSs~Ri 763 (936)
=||.+.++..+|+|++|-|++|-.=.| |--.+.+.+-..+ +...|+||.+. .+.... -++||+.-
T Consensus 57 EsE~aA~~~~~GAs~aGaRa~TaTS~~------Gl~lm~E~l~~aa----g~~lP~V~vv~~R~~~~p~~i~~d~~D~~- 125 (394)
T PRK08367 57 ESEHSAISACVGASAAGVRTFTATASQ------GLALMHEVLFIAA----GMRLPIVMAIGNRALSAPINIWNDWQDTI- 125 (394)
T ss_pred CCHHHHHHHHHHHHhhCCCeEeeeccc------hHHHHhhHHHHHH----HccCCEEEEECCCCCCCCCCcCcchHHHH-
Confidence 489999999999999999996543222 1112234432111 23578888762 111111 23677651
Q ss_pred hhhhhcCCCCCCcccCCCchhhhhccccceEEEEcCCHHHHHHHHHHHHh--c--CCCCcEEEEccccccCCC
Q 002323 764 ERFLQMSDDNPFVIPEMDPTLRKQIQECNWQIVNVTTPANYFHVLRRQIH--R--GFRKPLIVISPKNLLRHK 832 (936)
Q Consensus 764 ERfLQl~~~~~~~~~~~pg~~~~~~~~~N~~Vv~pstpa~~fhlLrrq~~--r--~~~~Pli~~~pK~Llr~~ 832 (936)
.+++.+|.+++|+|+.++|.+...+.. . ...-|+|++....++-|-
T Consensus 126 -----------------------~~rd~g~~~~~a~~~QEa~D~~~~Af~lAE~~~~~~Pviv~~Dgf~~sH~ 175 (394)
T PRK08367 126 -----------------------SQRDTGWMQFYAENNQEALDLILIAFKVAEDERVLLPAMVGFDAFILTHT 175 (394)
T ss_pred -----------------------hccccCeEEEeCCCHHHHHHHHHHHHHHHHHhCcCCCEEEEechhhhcCc
Confidence 123456999999999999999988876 2 244899999999877653
No 156
>PRK08659 2-oxoglutarate ferredoxin oxidoreductase subunit alpha; Validated
Probab=78.05 E-value=6.3 Score=45.73 Aligned_cols=116 Identities=14% Similarity=0.229 Sum_probs=70.4
Q ss_pred EEccCcchhHHHHHHhhhccCCCCcceeeeccchhhhhhHHHHHHHH-HhhhhhhhcCccccEEEcCc-cCCCCC----c
Q 002323 683 VSNSSLSEFGVLGFELGYSMENPNSLVLWEAQFGDFANGAQVIFDQF-LSSGESKWLRQTGLVVLLPH-GYDGQG----P 756 (936)
Q Consensus 683 V~nspLSE~avlG~e~G~sl~g~~~LviwEaqFgDF~n~Aq~iidqf-i~~~~~kw~~~s~lv~~lPh-G~~G~G----p 756 (936)
++-.- ||-+.++.++|+|++|-|++|--=.| -|+. +..++ ++.+ ...|+||..-. +..+.| +
T Consensus 51 ~vq~E-~E~aA~~~a~GAs~aG~Ra~TaTSg~--Gl~l----m~E~~~~a~~-----~e~P~Viv~~~R~gp~tg~p~~~ 118 (376)
T PRK08659 51 FIQME-DEIASMAAVIGASWAGAKAMTATSGP--GFSL----MQENIGYAAM-----TETPCVIVNVQRGGPSTGQPTKP 118 (376)
T ss_pred EEEeC-chHHHHHHHHhHHhhCCCeEeecCCC--cHHH----HHHHHHHHHH-----cCCCEEEEEeecCCCCCCCCCCc
Confidence 33334 89999999999999999996541111 1111 11122 1111 14798887642 111122 3
Q ss_pred cccCchhhhhhhcCCCCCCcccCCCchhhhhccccceEEEEcCCHHHHHHHHHHHHh--cCCCCcEEEEcccccc
Q 002323 757 EHSSARLERFLQMSDDNPFVIPEMDPTLRKQIQECNWQIVNVTTPANYFHVLRRQIH--RGFRKPLIVISPKNLL 829 (936)
Q Consensus 757 eHSs~RiERfLQl~~~~~~~~~~~pg~~~~~~~~~N~~Vv~pstpa~~fhlLrrq~~--r~~~~Pli~~~pK~Ll 829 (936)
+||..-.-|| . -+-+..+.|+.|+|+.++|.+...+.. .+++-|+|++..+.|-
T Consensus 119 ~q~D~~~~~~-----------~--------~hgd~~~ivl~p~~~QEa~d~~~~Af~lAE~~~~PViv~~D~~ls 174 (376)
T PRK08659 119 AQGDMMQARW-----------G--------THGDHPIIALSPSSVQECFDLTIRAFNLAEKYRTPVIVLADEVVG 174 (376)
T ss_pred CcHHHHHHhc-----------c--------cCCCcCcEEEeCCCHHHHHHHHHHHHHHHHHHCCCEEEEechHhh
Confidence 3332211111 0 012345899999999999999998876 4688999999999643
No 157
>PRK09627 oorA 2-oxoglutarate-acceptor oxidoreductase subunit OorA; Reviewed
Probab=75.92 E-value=7.7 Score=45.09 Aligned_cols=111 Identities=13% Similarity=0.160 Sum_probs=69.7
Q ss_pred chhHHHHHHhhhccCCCCcceeeeccchhhhhhHHHHHHHHHhhhhhhhcCccccEEEcCc--cCCCCCcccc---Cchh
Q 002323 689 SEFGVLGFELGYSMENPNSLVLWEAQFGDFANGAQVIFDQFLSSGESKWLRQTGLVVLLPH--GYDGQGPEHS---SARL 763 (936)
Q Consensus 689 SE~avlG~e~G~sl~g~~~LviwEaqFgDF~n~Aq~iidqfi~~~~~kw~~~s~lv~~lPh--G~~G~GpeHS---s~Ri 763 (936)
+|-+.++.++|+|++|-|++|-.=. +-|+. +-..+.-. -+...|+|+..=. |-.+.-|..+ .-
T Consensus 55 ~E~aA~~~a~GAs~aG~Ra~taTSg--~G~~l-----m~E~~~~a---~~~e~P~V~~~~~R~GpstG~p~~~~q~D~-- 122 (375)
T PRK09627 55 DEISGISVALGASMSGVKSMTASSG--PGISL-----KAEQIGLG---FIAEIPLVIVNVMRGGPSTGLPTRVAQGDV-- 122 (375)
T ss_pred CHHHHHHHHHHHHhhCCCEEeecCC--chHHH-----HhhHHHHH---HhccCCEEEEEeccCCCcCCCCCccchHHH--
Confidence 8999999999999999999654311 11221 11112100 1125698887654 3323334433 22
Q ss_pred hhhhhcCCCCCCcccCCCchhhhhccccceEEEEcCCHHHHHHHHHHHHh--cCCCCcEEEEccccc
Q 002323 764 ERFLQMSDDNPFVIPEMDPTLRKQIQECNWQIVNVTTPANYFHVLRRQIH--RGFRKPLIVISPKNL 828 (936)
Q Consensus 764 ERfLQl~~~~~~~~~~~pg~~~~~~~~~N~~Vv~pstpa~~fhlLrrq~~--r~~~~Pli~~~pK~L 828 (936)
..| .. +.+-+..+.|+.|+||.++|.+...+.. .+++-|||++..+.|
T Consensus 123 --~~~--~~-------------~~hgd~~~ivl~p~~~qEa~d~t~~Af~lAE~~~~PViv~~D~~l 172 (375)
T PRK09627 123 --NQA--KN-------------PTHGDFKSIALAPGSLEEAYTETVRAFNLAERFMTPVFLLLDETV 172 (375)
T ss_pred --HHH--hc-------------CCCCCcCcEEEeCCCHHHHHHHHHHHHHHHHHHcCceEEecchHH
Confidence 111 10 1122334779999999999999998876 569999999999965
No 158
>TIGR03710 OAFO_sf 2-oxoacid:acceptor oxidoreductase, alpha subunit. The genes for this enzyme in Prevotella intermedia 17, Persephonella marina EX-H1 and Picrophilus torridus DSM 9790 are in close proximity to a variety of TCA cycle genes. Persephonella marina and P. torridus are believed to encode complete TCA cycles, and none of these contains the lipoate-based 2-oxoglutarate dehydrogenase (E1/E2/E3) system. That system is presumed to be replaced by this one. In fact, the lipoate system is absent in most organisms possessing a member of this family, providing additional circumstantial evidence that many of these enzymes are capable of acting as 2-oxoglutarate dehydrogenases and supporting flux through TCA cycles in either the forward or reverse directions.
Probab=74.79 E-value=15 Score=44.98 Aligned_cols=118 Identities=17% Similarity=0.254 Sum_probs=75.0
Q ss_pred CcchhHHHHHHhhhccCCCCcceeeeccchhhhhhHHHHHHHHHhhhhhhhcCccccEEEcCc-cCC--C--CCccccCc
Q 002323 687 SLSEFGVLGFELGYSMENPNSLVLWEAQFGDFANGAQVIFDQFLSSGESKWLRQTGLVVLLPH-GYD--G--QGPEHSSA 761 (936)
Q Consensus 687 pLSE~avlG~e~G~sl~g~~~LviwEaqFgDF~n~Aq~iidqfi~~~~~kw~~~s~lv~~lPh-G~~--G--~GpeHSs~ 761 (936)
.=||.+.++..+|+|++|-|++|-.=-| -|. .+ .+.+-.. +. ...|+||..-. +.. | --++|+..
T Consensus 243 ~E~E~aA~~~a~GAs~aG~Ra~taTSg~--Gl~-lm---~E~l~~a--~~--~~~P~Vi~~~~R~gpstg~~t~~eq~D~ 312 (562)
T TIGR03710 243 AEDEIAAINMAIGASYAGARAMTATSGP--GFA-LM---TEALGLA--GM--TETPLVIVDVQRGGPSTGLPTKTEQSDL 312 (562)
T ss_pred eccHHHHHHHHHhHHhcCCceeecCCCC--Chh-Hh---HHHHhHH--Hh--ccCCEEEEEcccCCCCCCCCCCccHHHH
Confidence 3489999999999999999996543221 122 22 2333111 11 25698887642 211 2 12444433
Q ss_pred hhhhhhhcCCCCCCcccCCCchhhhhccccceEEEEcCCHHHHHHHHHHHHh--cCCCCcEEEEccccccCCCC
Q 002323 762 RLERFLQMSDDNPFVIPEMDPTLRKQIQECNWQIVNVTTPANYFHVLRRQIH--RGFRKPLIVISPKNLLRHKD 833 (936)
Q Consensus 762 RiERfLQl~~~~~~~~~~~pg~~~~~~~~~N~~Vv~pstpa~~fhlLrrq~~--r~~~~Pli~~~pK~Llr~~~ 833 (936)
++.+-. .|-+..|.|+.|+|+.++|.+...+.. .+++-|||++..+.|-.+..
T Consensus 313 ----~~~~~~---------------~hgd~~~ivl~p~~~qEa~d~~~~Af~lAe~~~~PViv~~D~~l~~~~~ 367 (562)
T TIGR03710 313 ----LFALYG---------------GHGEFPRIVLAPGSPEECFYLAIEAFNLAEKYQTPVIVLSDQYLANSYE 367 (562)
T ss_pred ----HHHhcC---------------CCCCcCceEEcCCCHHHHHHHHHHHHHHHHHhcCCEEEEechHHhCCce
Confidence 222111 122346999999999999999988876 56999999999999865443
No 159
>COG3960 Glyoxylate carboligase [General function prediction only]
Probab=71.08 E-value=4.5 Score=45.85 Aligned_cols=106 Identities=27% Similarity=0.319 Sum_probs=70.0
Q ss_pred ccccCCCccccceeechhHHHHHhcCCCCCCceEEEEEecCcccCCCchHHHhhhcc---CCCCCccccEEEEEEeCCc-
Q 002323 360 VANPSHLEAVDPVVVGKTRAKQYYSHDVDRTKNMGVLIHGDGSFAGQGVVYETLHLS---ALPNYTTGGTIHIVVNNQV- 435 (936)
Q Consensus 360 ~~NPSHLeav~PVa~G~ArA~q~~~~d~~~~~~v~v~~hGDgA~sGQGvv~EtLNlA---~LP~Y~~GGtIhIV~NNQi- 435 (936)
+....+||-..|-++|..-|. .+.-.|.+.||=-|. = .-|-|... +|| -|||++||-|
T Consensus 415 cgqagplgwtipaalgv~~ad---------p~r~vvalsgdydfq--f-mieelavgaq~k~p------yihv~vnnayl 476 (592)
T COG3960 415 CGQAGPLGWTIPAALGVCAAD---------PKRNVVAISGDYDFQ--F-LIEELAVGAQFKIP------YIHVLVNNAYL 476 (592)
T ss_pred cCccCCcccccchhhceeecC---------CCCceEEeecCchHH--H-HHHHHhhhhcccCc------eEEEEecchHH
Confidence 345567888999999976552 123466778887773 2 33444444 999 9999999965
Q ss_pred --------ccccCCCCCC---------CcchhhH-------------------HHHHHHHHHHHHHHccCCCEEEEEEee
Q 002323 436 --------AFTTDPRAGR---------SSQYCTD-------------------AVVHVCELAAEWRQKFHSDVVVDLVCY 479 (936)
Q Consensus 436 --------gfTT~~~~~r---------ss~y~tD-------------------AV~~a~~~A~e~rr~f~~pvlIdlv~Y 479 (936)
||..+..-+- -..|..| ....|...|.+...+.+-||+||++--
T Consensus 477 glirqaqr~f~mdy~v~laf~nin~~~~~gygvdhv~v~eglgckairv~~p~e~a~af~~a~~lm~eh~vpvvve~ile 556 (592)
T COG3960 477 GLIRQAQRAFDMDYCVQLAFENINSSEVNGYGVDHVKVAEGLGCKAIRVFKPEDIAPAFEQAKALMAQHRVPVVVEVILE 556 (592)
T ss_pred HHHHHHHhcCCccceeeehhhccCCccccccCccceeehhccCceeEEecChHHhhHHHHHHHHHHHhcCCCeeeehHHH
Confidence 5555432211 0123333 555677788888888999999999876
Q ss_pred ecCC
Q 002323 480 RRFG 483 (936)
Q Consensus 480 Rr~G 483 (936)
|...
T Consensus 557 rvtn 560 (592)
T COG3960 557 RVTN 560 (592)
T ss_pred Hhhc
Confidence 6543
No 160
>TIGR03297 Ppyr-DeCO2ase phosphonopyruvate decarboxylase. This family consists of examples of phosphonopyruvate an decarboxylase enzyme that produces phosphonoacetaldehyde (Pald), the second step in the biosynthesis phosphonate-containing compounds. Since the preceding enzymate step, PEP phosphomutase (AepX, TIGR02320) favors the substrate PEP energetically, the decarboxylase is required to drive the reaction in the direction of phosphonate production. Pald is a precursor of natural products including antibiotics like bialaphos and phosphonothricin in Streptomyces species, phosphonate-modified molecules such as the polysaccharide B of Bacteroides fragilis, the phosphonolipids of Tetrahymena pyroformis, the glycosylinositolphospholipids of Trypanosoma cruzi. This gene generally occurs in prokaryotic organisms adjacent to the gene for AepX. Most often an aminotansferase (aepZ) is also present which leads to the production of the most common phosphonate compound, 2-aminoethylphosphonate (A
Probab=66.12 E-value=20 Score=41.47 Aligned_cols=113 Identities=16% Similarity=0.191 Sum_probs=75.6
Q ss_pred chhHHHHHHhhhccC-CCCcceeeeccchhhhhhHHHHHHHHHhhhhhhhcCccccEEEcCc-cCCCC--CccccC-ch-
Q 002323 689 SEFGVLGFELGYSME-NPNSLVLWEAQFGDFANGAQVIFDQFLSSGESKWLRQTGLVVLLPH-GYDGQ--GPEHSS-AR- 762 (936)
Q Consensus 689 SE~avlG~e~G~sl~-g~~~LviwEaqFgDF~n~Aq~iidqfi~~~~~kw~~~s~lv~~lPh-G~~G~--GpeHSs-~R- 762 (936)
.|..-+|.+.||.|. |.+++ +=+|-.-+-|. + +-+.|--....++-|++++.-| |..|. -|+|.- .|
T Consensus 34 ~E~~av~iaaG~~latG~~~~--v~mQnSGlGn~----v-N~l~SL~~~~~y~iP~l~~i~~RG~~g~~depqh~~~G~~ 106 (361)
T TIGR03297 34 NEGAAVGLAAGAYLATGKRAA--VYMQNSGLGNA----V-NPLTSLADTEVYDIPLLLIVGWRGEPGVHDEPQHVKQGRI 106 (361)
T ss_pred CchHHHHHHHHHHHhcCCccE--EEEecCchhhh----h-hHHHhhccccccCcCeeEEEecCCCCCCCCCchhhHHhHH
Confidence 488899999999999 99994 44687777662 2 3344443456667888888654 33332 377864 32
Q ss_pred hhhhhhcCCCCCCcccCCCchhhhhccccceEEEEc-CCHHHHHHHHHHHHh--cCCCCcEEEEcccccc
Q 002323 763 LERFLQMSDDNPFVIPEMDPTLRKQIQECNWQIVNV-TTPANYFHVLRRQIH--RGFRKPLIVISPKNLL 829 (936)
Q Consensus 763 iERfLQl~~~~~~~~~~~pg~~~~~~~~~N~~Vv~p-stpa~~fhlLrrq~~--r~~~~Pli~~~pK~Ll 829 (936)
.++.|..+ ++..... .++++....+.+++. .+.++|+.++-+|..+
T Consensus 107 t~~lL~~~---------------------~i~~~~~~~~~~~~~~~~~~a~~~~~~~~~p~a~l~~~~~~ 155 (361)
T TIGR03297 107 TLSLLDAL---------------------EIPWEVLSTDNDEALAQIERALAHALATSRPYALVVRKGTF 155 (361)
T ss_pred HHHHHHHc---------------------CCCEEECCCChHHHHHHHHHHHHHHHHHCCCEEEEEccccc
Confidence 35555543 3444444 667777776766665 3478999999999887
No 161
>cd07034 TPP_PYR_PFOR_IOR-alpha_like Pyrimidine (PYR) binding domain of pyruvate ferredoxin oxidoreductase (PFOR), indolepyruvate ferredoxin oxidoreductase alpha subunit (IOR-alpha), and related proteins. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain, of pyruvate ferredoxin oxidoreductase (PFOR), indolepyruvate ferredoxin oxidoreductase (IOR) alpha subunit (IOR-alpha), and related proteins, subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. The PYR and PP domains have a common fold, but do not share strong sequence conservation. Th
Probab=60.87 E-value=98 Score=30.85 Aligned_cols=114 Identities=14% Similarity=0.153 Sum_probs=67.3
Q ss_pred ceEEEccCcchhHHHHHHhhhccCCCCcceeeeccchhhhhhHHHHHHHHHhhhhhhhcCccccEEEcCccC-CCCCccc
Q 002323 680 MFTVSNSSLSEFGVLGFELGYSMENPNSLVLWEAQFGDFANGAQVIFDQFLSSGESKWLRQTGLVVLLPHGY-DGQGPEH 758 (936)
Q Consensus 680 ~~rV~nspLSE~avlG~e~G~sl~g~~~LviwEaqFgDF~n~Aq~iidqfi~~~~~kw~~~s~lv~~lPhG~-~G~GpeH 758 (936)
..+++.+- .|.+..+.+-||+..+.+ +++=.+-.-+.| + ++...+ -+..++||+++...-. .+.+-.|
T Consensus 41 ~i~~i~~~-~E~~A~~~A~g~~r~~~~--v~~~~~gpG~~n-~---~~~l~~----a~~~~~P~v~i~g~~~~~~~~~~~ 109 (160)
T cd07034 41 GGVVVQAE-SEHAAAEAAIGASAAGAR--AMTATSGPGLNL-M---AEALYL----AAGAELPLVIVVAQRPGPSTGLPK 109 (160)
T ss_pred CcEEEEeC-CHHHHHHHHHHHHhhCCc--EEEeeCcchHHH-H---HHHHHH----HHhCCCCEEEEEeeCCCCCCCCCC
Confidence 46777766 999999999999998766 344333222333 2 444432 2234689998864322 1111001
Q ss_pred c-CchhhhhhhcCCCCCCcccCCCchhhhhccccceEEEEcCCHHHHHHHHHHHHh--cCCCCcEEEEc
Q 002323 759 S-SARLERFLQMSDDNPFVIPEMDPTLRKQIQECNWQIVNVTTPANYFHVLRRQIH--RGFRKPLIVIS 824 (936)
Q Consensus 759 S-s~RiERfLQl~~~~~~~~~~~pg~~~~~~~~~N~~Vv~pstpa~~fhlLrrq~~--r~~~~Pli~~~ 824 (936)
. +..+. |.. ++. . -.-+..+++|++...+++++++ +..+.|++++.
T Consensus 110 ~~~~~~~---~~~-----~~~-----------~-~~~~~~~~~~~~~~~~~~~A~~~a~~~~~Pv~l~~ 158 (160)
T cd07034 110 PDQSDLM---AAR-----YGG-----------H-PWPVLAPSSVQEAFDLALEAFELAEKYRLPVIVLS 158 (160)
T ss_pred cCcHHHH---HHH-----hCC-----------C-CEEEEeCCCHHHHHHHHHHHHHHHHHhCCCEEEEc
Confidence 1 11111 110 110 1 2677778999999999999987 44568999874
No 162
>PF03894 XFP: D-xylulose 5-phosphate/D-fructose 6-phosphate phosphoketolase; InterPro: IPR005593 Phosphoketolases (PK) are key enzymes of the pentose phosphate pathway of heterofermentative and facultative homofermentative lactic acid bacteria and of the D-fructose 6-phosphate shunt of bifidobacteria. PK activity has been sporadically reported in other microorganisms including eukaryotic yeasts. Xylulose-5-phosphate/fructose-6-phosphate phosphoketolase is a thiamine diphosphate (ThdP)-dependent enzyme found in bacteria such as Bifidobacterium sp [, ]. This enzyme has dual-specificity with the following catalytic activities: 4.1.2.9 from EC: xylose 5-P + Pi = acetyl-P + glyeraldehyde-3-P 4.1.2.22 from EC: fructose-6-P + Pi = acetyl-P + erythrose-4-P Phosphoketolases are distantly related to transketolases, e.g. IPR005475 from INTERPRO.; GO: 0016832 aldehyde-lyase activity, 0005975 carbohydrate metabolic process; PDB: 3AI7_B 3AHC_A 3AHJ_A 3AHG_A 3AHE_A 3AHI_A 3AHD_A 3AHF_A 3AHH_A.
Probab=60.67 E-value=75 Score=33.52 Aligned_cols=151 Identities=19% Similarity=0.236 Sum_probs=67.7
Q ss_pred CCcEEEecccCCCcccccccceeeecCCCceee-cCCCCcccCCCcceEEEccCcchhHHHHHHhhhccCCCCcce-eee
Q 002323 635 GNHVRLSGQDVERGTFSHRHSVLHDQETGEKYC-PLDHVMMNQDEEMFTVSNSSLSEFGVLGFELGYSMENPNSLV-LWE 712 (936)
Q Consensus 635 g~~Vrl~GqDv~rGtF~~RHavl~dq~t~~~y~-pL~~l~~~~~~g~~rV~nspLSE~avlG~e~G~sl~g~~~Lv-iwE 712 (936)
..+.||+|.|= |-|.|=..+.|- |+..|. +...=..+........+.+.|||..+-|+--||.+.|-..|. --|
T Consensus 16 ~~nfRvf~PDE---t~SNrL~~v~e~-t~r~w~~~~~~~~~~~~~~~~G~V~e~LSEh~c~G~leGY~LtGrhglf~sYE 91 (179)
T PF03894_consen 16 PRNFRVFGPDE---TASNRLNAVFEV-TNRQWMARILPPDDDEHLAPGGRVMEVLSEHQCQGWLEGYLLTGRHGLFASYE 91 (179)
T ss_dssp TTTEEEEESS----TTTTT-GGGGGT---EE--S----TTT-TTEESS-SEEE-S-HHHHHHHHHHHHHTT-EEEEEEEG
T ss_pred CCcceeECCCc---chhhchHHHHHh-cccccccccCCCcchhhcccCCeeeeecCHHHHHHHHHHHHhcCCcccccccc
Confidence 56889999994 333332222221 444331 110000001113345667999999999999999999988743 334
Q ss_pred ccchhhhhhHHHHHHHHHh----hhhhhhcCc-cccEEEc-CccCC--CCCccccCch-hhhhhhcCCCCCCcccCCCch
Q 002323 713 AQFGDFANGAQVIFDQFLS----SGESKWLRQ-TGLVVLL-PHGYD--GQGPEHSSAR-LERFLQMSDDNPFVIPEMDPT 783 (936)
Q Consensus 713 aqFgDF~n~Aq~iidqfi~----~~~~kw~~~-s~lv~~l-PhG~~--G~GpeHSs~R-iERfLQl~~~~~~~~~~~pg~ 783 (936)
| |+-.---++.|++- +.+..|+.. .+|.+++ -|.++ --|-.|-.-- |+-++...
T Consensus 92 A----F~~ivdsM~~Qh~Kwl~~~~~~~wR~~~~SlN~l~TS~~wrQdhNG~SHQdPgfi~~~~~k~------------- 154 (179)
T PF03894_consen 92 A----FAHIVDSMLNQHAKWLRHARELPWRAPIPSLNYLLTSHVWRQDHNGFSHQDPGFIDHVLNKK------------- 154 (179)
T ss_dssp G----GGGGGHHHHHHHHHHHHHHHH-TTS---B-EEEEEES-CCG-TTT-GGG---THHHHHHCC--------------
T ss_pred h----hHHHHHHHHHHHHHHHHHHHhCcCCCCCcceeEEeeccceecCCCCcccCCChHHHHHHhcC-------------
Confidence 4 66544444555542 235566654 3355554 57663 3355554331 12222211
Q ss_pred hhhhccccceEEEEcCCHHHHHHHHHHHH
Q 002323 784 LRKQIQECNWQIVNVTTPANYFHVLRRQI 812 (936)
Q Consensus 784 ~~~~~~~~N~~Vv~pstpa~~fhlLrrq~ 812 (936)
...++|..|..+--.--.+..++
T Consensus 155 ------~~~~RvylPpDANtlLav~~~cl 177 (179)
T PF03894_consen 155 ------PDVVRVYLPPDANTLLAVMDHCL 177 (179)
T ss_dssp -------T-EEEEE-SSHHHHHHHHHHHH
T ss_pred ------cccceeecCCcHhHHHHHHHHHh
Confidence 23689999876654444444333
No 163
>PRK08659 2-oxoglutarate ferredoxin oxidoreductase subunit alpha; Validated
Probab=57.96 E-value=23 Score=41.23 Aligned_cols=78 Identities=17% Similarity=0.221 Sum_probs=55.5
Q ss_pred ccCCCchH--HHhhhcc---CCCCCccccEEEEEEeCC---cccccCCC--CCCCcchh------------hH--HHHHH
Q 002323 402 SFAGQGVV--YETLHLS---ALPNYTTGGTIHIVVNNQ---VAFTTDPR--AGRSSQYC------------TD--AVVHV 457 (936)
Q Consensus 402 A~sGQGvv--~EtLNlA---~LP~Y~~GGtIhIV~NNQ---igfTT~~~--~~rss~y~------------tD--AV~~a 457 (936)
++||||.. +|.+.++ .+| +|.++.|-. .|.+|..+ |.....|. .| .++.-
T Consensus 77 aTSg~Gl~lm~E~~~~a~~~e~P------~Viv~~~R~gp~tg~p~~~~q~D~~~~~~~~hgd~~~ivl~p~~~QEa~d~ 150 (376)
T PRK08659 77 ATSGPGFSLMQENIGYAAMTETP------CVIVNVQRGGPSTGQPTKPAQGDMMQARWGTHGDHPIIALSPSSVQECFDL 150 (376)
T ss_pred ecCCCcHHHHHHHHHHHHHcCCC------EEEEEeecCCCCCCCCCCcCcHHHHHHhcccCCCcCcEEEeCCCHHHHHHH
Confidence 47889987 7888776 899 888888854 33333222 11122222 22 89999
Q ss_pred HHHHHHHHHccCCCEEEEEEeeecCCCCCC
Q 002323 458 CELAAEWRQKFHSDVVVDLVCYRRFGHNEI 487 (936)
Q Consensus 458 ~~~A~e~rr~f~~pvlIdlv~YRr~GHne~ 487 (936)
+..|++.+.+++-||+|=..+| -+|+..
T Consensus 151 ~~~Af~lAE~~~~PViv~~D~~--lsh~~~ 178 (376)
T PRK08659 151 TIRAFNLAEKYRTPVIVLADEV--VGHMRE 178 (376)
T ss_pred HHHHHHHHHHHCCCEEEEechH--hhCCcc
Confidence 9999999999999999999884 888754
No 164
>COG4231 Indolepyruvate ferredoxin oxidoreductase, alpha and beta subunits [Energy production and conversion]
Probab=57.23 E-value=87 Score=38.85 Aligned_cols=183 Identities=17% Similarity=0.151 Sum_probs=110.5
Q ss_pred EEEccCcchhHHHHHHhhhccCCCCcceeeeccchhhhhhHHHHHHHHHhhhhhhhcCccccEEEcC--ccCCCCCcccc
Q 002323 682 TVSNSSLSEFGVLGFELGYSMENPNSLVLWEAQFGDFANGAQVIFDQFLSSGESKWLRQTGLVVLLP--HGYDGQGPEHS 759 (936)
Q Consensus 682 rV~nspLSE~avlG~e~G~sl~g~~~LviwEaqFgDF~n~Aq~iidqfi~~~~~kw~~~s~lv~~lP--hG~~G~GpeHS 759 (936)
-++-=.++|--.+-.++|.++.|-+.|+-.- .-| .|.| .|-|++..- -+..-|||++.- ||. ||
T Consensus 59 vy~e~s~NEkvA~e~a~GA~~~G~ral~~mK-hVG--lNvA---sDpl~s~ay--~Gv~GGlviv~aDDpg~------~S 124 (640)
T COG4231 59 VYFEWSLNEKVALETAAGASYAGVRALVTMK-HVG--LNVA---SDPLMSLAY--AGVTGGLVIVVADDPGM------HS 124 (640)
T ss_pred EEEEecccHHHHHHHHHHhhhcCceeeEEec-ccc--cccc---hhhhhhhhh--cCccccEEEEEccCCCc------cc
Confidence 4555678999999999999999999954433 223 5656 777776441 124567888764 333 66
Q ss_pred CchhhhhhhcCCCCCCcccCCCchhhhhccccceEEEEcCCHHHHHHHHHHHHh--cCCCCcEEEEccccccCCCCCC--
Q 002323 760 SARLERFLQMSDDNPFVIPEMDPTLRKQIQECNWQIVNVTTPANYFHVLRRQIH--RGFRKPLIVISPKNLLRHKDCK-- 835 (936)
Q Consensus 760 s~RiERfLQl~~~~~~~~~~~pg~~~~~~~~~N~~Vv~pstpa~~fhlLrrq~~--r~~~~Pli~~~pK~Llr~~~~~-- 835 (936)
|. .| +|-.+| .+..+|-|+.|++|..++.+.+.+.. +.++-|+|+=+-..+-.....+
T Consensus 125 Sq-ne-------qdsr~y----------~~~a~iPvLeP~d~Qea~d~~~~afelSe~~~~pVilr~ttr~~h~~~~V~~ 186 (640)
T COG4231 125 SQ-NE-------QDSRAY----------GKFALIPVLEPSDPQEAYDYVKYAFELSEKSGLPVILRTTTRVSHSRGDVEV 186 (640)
T ss_pred cc-ch-------hHhHHH----------HHhcCceeecCCChHHHHHHHHHHHHHHHHhCCCEEEEEEeeeeccceeEEe
Confidence 66 22 111222 23346999999999999999999875 8899999987665543222211
Q ss_pred C--CcccccccCCCCCCCCCCCceeEeecCC-CC----------------------CCCCCCCccEE-EEeCchhHHHHH
Q 002323 836 S--NLSEFDDVQGHPGFDKQGTRFKRLIKDQ-NG----------------------HSDLEEGIRRL-VLCSGKVFITSL 889 (936)
Q Consensus 836 S--~l~ef~~~~~~~~~~~pg~~F~~vi~d~-~~----------------------~~~~~~~v~rv-ilcsGkvyydL~ 889 (936)
+ +.+.+.. .+-.+.++++++-.+-.+. .+ .+.-.++ .+| |+|||+-|-++.
T Consensus 187 ~~~~~~~~~~--~~~~~~k~~~r~V~~p~~~~~~~~~~l~~k~~a~~~~~~~~~~n~v~~~~~-~~lGII~~G~ay~yVk 263 (640)
T COG4231 187 GLNRRPIVEP--EDEFFIKDPGRYVRVPANALRHRHRKLLEKWEAAEEFINANPLNRVEGSDD-AKLGIIASGIAYNYVK 263 (640)
T ss_pred ccccCCCCcc--ccccccCCccceeecCcccchhhHHHHHHHHHHHHHHHhhCcccccccCCC-CceEEEecCccHHHHH
Confidence 1 0011110 0002233455555443332 00 0001122 455 999999999999
Q ss_pred HhhcccCCce
Q 002323 890 MKGGRSAVQV 899 (936)
Q Consensus 890 ~~r~~~~~~~ 899 (936)
++-++-++..
T Consensus 264 eAl~~lgl~~ 273 (640)
T COG4231 264 EALEDLGLDD 273 (640)
T ss_pred HHHHHcCCCc
Confidence 9988766544
No 165
>TIGR02176 pyruv_ox_red pyruvate:ferredoxin (flavodoxin) oxidoreductase, homodimeric. This model represents a single chain form of pyruvate:ferredoxin (or flavodoxin) oxidoreductase. This enzyme may transfer electrons to nitrogenase in nitrogen-fixing species. Portions of this protein are homologous to gamma subunit of the four subunit pyruvate:ferredoxin (flavodoxin) oxidoreductase.
Probab=54.93 E-value=48 Score=44.21 Aligned_cols=110 Identities=11% Similarity=0.039 Sum_probs=69.6
Q ss_pred CcchhHHHHHHhhhccCCCCcceeeeccchhhhhhHHHHHHHHHhhhhhhh-cCccccEEEcCc-cCCCC----CccccC
Q 002323 687 SLSEFGVLGFELGYSMENPNSLVLWEAQFGDFANGAQVIFDQFLSSGESKW-LRQTGLVVLLPH-GYDGQ----GPEHSS 760 (936)
Q Consensus 687 pLSE~avlG~e~G~sl~g~~~LviwEaqFgDF~n~Aq~iidqfi~~~~~kw-~~~s~lv~~lPh-G~~G~----GpeHSs 760 (936)
.=||.+.+|..+|++.+|-+..|..=.|= |+ -++-++ +++ +...|+||-... ++.++ .+.||.
T Consensus 57 ~EsE~~A~~av~GA~~aGara~T~TSs~G--L~----LM~e~l-----~~~ag~~~P~Vi~va~R~~~~~~~~i~~dh~D 125 (1165)
T TIGR02176 57 MQSEAGAAGAVHGALQTGALTTTFTASQG--LL----LMIPNM-----YKIAGELLPCVFHVSARAIAAHALSIFGDHQD 125 (1165)
T ss_pred ccchHHHHHHHHhHhhcCCCEEEecChhH--HH----HHHHHH-----HHHHhccCCEEEEEecCCCCCCCCccCCCchH
Confidence 34899999999999999987744322111 11 112222 122 125798887764 22221 355664
Q ss_pred chhhhhhhcCCCCCCcccCCCchhhhhccccceEEEEcCCHHHHHHHHHHHHh--cCCCCcEEEEccccccCC
Q 002323 761 ARLERFLQMSDDNPFVIPEMDPTLRKQIQECNWQIVNVTTPANYFHVLRRQIH--RGFRKPLIVISPKNLLRH 831 (936)
Q Consensus 761 ~RiERfLQl~~~~~~~~~~~pg~~~~~~~~~N~~Vv~pstpa~~fhlLrrq~~--r~~~~Pli~~~pK~Llr~ 831 (936)
. .+.++.++.|+.|+|+.+++++-..+.. .+.+.|+|+|..-..+-|
T Consensus 126 v------------------------~~~R~~G~ivl~s~svQEa~D~al~A~~lAe~~~~Pvi~~~Dgf~tsh 174 (1165)
T TIGR02176 126 V------------------------MAARQTGFAMLASSSVQEVMDLALVAHLATIEARVPFMHFFDGFRTSH 174 (1165)
T ss_pred H------------------------HHhhcCCeEEEeCCCHHHHHHHHHHHHHHHHhcCCCEEEEecCceecc
Confidence 3 1234457999999999999997766654 458999999998655444
No 166
>COG2609 AceE Pyruvate dehydrogenase complex, dehydrogenase (E1) component [Energy production and conversion]
Probab=54.30 E-value=5.7e+02 Score=32.64 Aligned_cols=40 Identities=15% Similarity=0.159 Sum_probs=32.5
Q ss_pred CCceEEEEEecCcccCCCchHHHhhhcc---CCCCCccccEEEEEEeCC
Q 002323 389 RTKNMGVLIHGDGSFAGQGVVYETLHLS---ALPNYTTGGTIHIVVNNQ 434 (936)
Q Consensus 389 ~~~~v~v~~hGDgA~sGQGvv~EtLNlA---~LP~Y~~GGtIhIV~NNQ 434 (936)
..+.-++||.|||-+- ++.-.+++.+| +|. -+||||-=|-
T Consensus 219 ~~~~~v~afLGDgEmD-Epes~gAi~~A~re~Ld-----NlifVincNl 261 (887)
T COG2609 219 TSDQKVWAFLGDGEMD-EPESRGAITEAAREKLD-----NLIFVINCNL 261 (887)
T ss_pred CCCCeEEEEecCcccC-CchhhHHHHHHHHhcCC-----ceEEEEecch
Confidence 4567889999999998 99999999999 776 3666665554
No 167
>cd03377 TPP_PFOR_PNO Thiamine pyrophosphate (TPP family), PFOR_PNO subfamily, TPP-binding module; composed of proteins similar to the single subunit pyruvate ferredoxin oxidoreductase (PFOR) of Desulfovibrio Africanus, present in bacteria and amitochondriate eukaryotes. This subfamily also includes proteins characterized as pyruvate NADP+ oxidoreductase (PNO). These enzymes are dependent on TPP and a divalent metal cation as cofactors. PFOR and PNO catalyze the oxidative decarboxylation of pyruvate to form acetyl-CoA, a crucial step in many metabolic pathways. Archaea, anaerobic bacteria and eukaryotes that lack mitochondria (and therefore pyruvate dehydrogenase) use PFOR to oxidatively decarboxylate pyruvate, with ferredoxin or flavodoxin as the electron acceptor. The PFOR from cyanobacterium Anabaena (NifJ) is required for the transfer of electrons from pyruvate to flavodoxin, which reduces nitrogenase. The facultative anaerobic mitochondrion of the photosynthetic protist Euglena gra
Probab=52.70 E-value=50 Score=38.44 Aligned_cols=37 Identities=22% Similarity=0.095 Sum_probs=22.2
Q ss_pred EEEEEecCcccCCCchHHHh-hhccCCCCCccccEEEEEEeCCc
Q 002323 393 MGVLIHGDGSFAGQGVVYET-LHLSALPNYTTGGTIHIVVNNQV 435 (936)
Q Consensus 393 v~v~~hGDgA~sGQGvv~Et-LNlA~LP~Y~~GGtIhIV~NNQi 435 (936)
=++++-|||....-|.-+=. .-.++.. +.+||.||+.
T Consensus 153 ~v~v~gGDG~~ydIG~~~l~ha~~r~~n------i~~iv~DNe~ 190 (365)
T cd03377 153 SVWIIGGDGWAYDIGYGGLDHVLASGEN------VNILVLDTEV 190 (365)
T ss_pred ceEEEecchhhhccchhhHHHHHHcCCC------eEEEEECCcc
Confidence 47788899954333322210 1123677 8899999973
No 168
>KOG4166 consensus Thiamine pyrophosphate-requiring enzyme [Amino acid transport and metabolism; Coenzyme transport and metabolism]
Probab=48.13 E-value=34 Score=40.38 Aligned_cols=59 Identities=24% Similarity=0.316 Sum_probs=39.5
Q ss_pred CccccceeechhHHHHHhcCCCCCCceEEEEEecCcccCCCchHHHhhhccCCCCCccccEEEEEEeCC-ccccc
Q 002323 366 LEAVDPVVVGKTRAKQYYSHDVDRTKNMGVLIHGDGSFAGQGVVYETLHLSALPNYTTGGTIHIVVNNQ-VAFTT 439 (936)
Q Consensus 366 Leav~PVa~G~ArA~q~~~~d~~~~~~v~v~~hGDgA~sGQGvv~EtLNlA~LP~Y~~GGtIhIV~NNQ-igfTT 439 (936)
.|...|-|+|+.-|. . +.++|=+-|||+|+=.+.=-.|.--.++| +=.++-||+ -|+-|
T Consensus 526 MGfGLPAAIGAsVA~----P-----~~iViDIDGDaSF~Mt~~ELat~rq~~~P------VKiLiLNNeeqGMVt 585 (675)
T KOG4166|consen 526 MGFGLPAAIGASVAN----P-----DAIVIDIDGDASFIMTVQELATIRQENLP------VKILILNNEEQGMVT 585 (675)
T ss_pred cccCcchhhcccccC----c-----ccEEEeccCCceeeeehHhhhhhhhcCCc------eEEEEecchhhhhHH
Confidence 455667777766553 2 37999999999998333333333334999 988899996 34444
No 169
>PRK09627 oorA 2-oxoglutarate-acceptor oxidoreductase subunit OorA; Reviewed
Probab=45.17 E-value=31 Score=40.24 Aligned_cols=78 Identities=18% Similarity=0.189 Sum_probs=54.0
Q ss_pred ccCCCchHH--Hhhhcc---CCCCCccccEEEEEEeCC---cccccCCCCC-----CCc---------chhhH--HHHHH
Q 002323 402 SFAGQGVVY--ETLHLS---ALPNYTTGGTIHIVVNNQ---VAFTTDPRAG-----RSS---------QYCTD--AVVHV 457 (936)
Q Consensus 402 A~sGQGvv~--EtLNlA---~LP~Y~~GGtIhIV~NNQ---igfTT~~~~~-----rss---------~y~tD--AV~~a 457 (936)
|+||+|.-+ |.+.++ .+| +|.++.+=. .|+-|....+ +.. -+++| .++.-
T Consensus 76 aTSg~G~~lm~E~~~~a~~~e~P------~V~~~~~R~GpstG~p~~~~q~D~~~~~~~~hgd~~~ivl~p~~~qEa~d~ 149 (375)
T PRK09627 76 ASSGPGISLKAEQIGLGFIAEIP------LVIVNVMRGGPSTGLPTRVAQGDVNQAKNPTHGDFKSIALAPGSLEEAYTE 149 (375)
T ss_pred ecCCchHHHHhhHHHHHHhccCC------EEEEEeccCCCcCCCCCccchHHHHHHhcCCCCCcCcEEEeCCCHHHHHHH
Confidence 478999865 888877 999 887777643 5555544211 100 11122 88999
Q ss_pred HHHHHHHHHccCCCEEEEEEeeecCCCCCC
Q 002323 458 CELAAEWRQKFHSDVVVDLVCYRRFGHNEI 487 (936)
Q Consensus 458 ~~~A~e~rr~f~~pvlIdlv~YRr~GHne~ 487 (936)
+..|++.+.+++-||+|=..+ +. +|+..
T Consensus 150 t~~Af~lAE~~~~PViv~~D~-~l-sh~~~ 177 (375)
T PRK09627 150 TVRAFNLAERFMTPVFLLLDE-TV-GHMYG 177 (375)
T ss_pred HHHHHHHHHHHcCceEEecch-HH-hCCee
Confidence 999999999999999998888 33 77654
No 170
>cd07038 TPP_PYR_PDC_IPDC_like Pyrimidine (PYR) binding domain of pyruvate decarboxylase (PDC), indolepyruvate decarboxylase (IPDC) and related proteins. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of pyruvate decarboxylase (PDC) and indolepyruvate decarboxylase (IPDC) subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this sub-family. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. TPP-dependent enzymes are multisubunit proteins, the smallest catalytic unit being a dimer-of-active sites, for many
Probab=42.53 E-value=27 Score=35.56 Aligned_cols=78 Identities=10% Similarity=0.055 Sum_probs=49.2
Q ss_pred eEEEEEecCcccCCCchHHHhhhccCCCCCccccEEEEEEeCCccc-ccCC-----------CCCCC-----cchh----
Q 002323 392 NMGVLIHGDGSFAGQGVVYETLHLSALPNYTTGGTIHIVVNNQVAF-TTDP-----------RAGRS-----SQYC---- 450 (936)
Q Consensus 392 ~v~v~~hGDgA~sGQGvv~EtLNlA~LP~Y~~GGtIhIV~NNQigf-TT~~-----------~~~rs-----s~y~---- 450 (936)
.++++..|=|.++.-.-++|+ -..+.| +|+|+-+....- .+.. .++.+ +.|+
T Consensus 61 gv~~~t~GpG~~n~~~gl~~A-~~~~~P------vl~i~g~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~tk~~~~v~ 133 (162)
T cd07038 61 GALVTTYGVGELSALNGIAGA-YAEHVP------VVHIVGAPSTKAQASGLLLHHTLGDGDFDVFLKMFEEITCAAARLT 133 (162)
T ss_pred EEEEEcCCccHHHHHHHHHHH-HHcCCC------EEEEecCCCccccccccceeecccccchHHHHHHHHhheeEEEEeC
Confidence 677777788888877777777 345899 998886543210 0000 01100 1111
Q ss_pred -hHHHHHHHHHHHHHHHccCCCEEEEE
Q 002323 451 -TDAVVHVCELAAEWRQKFHSDVVVDL 476 (936)
Q Consensus 451 -tDAV~~a~~~A~e~rr~f~~pvlIdl 476 (936)
.+.+-.+++.|+..+..+++||+||+
T Consensus 134 ~~~~i~~~v~~A~~~a~s~~gPV~l~i 160 (162)
T cd07038 134 DPENAAEEIDRVLRTALRESRPVYIEI 160 (162)
T ss_pred CHHHHHHHHHHHHHHHHHCCCCEEEEc
Confidence 12677778888888888889999986
No 171
>PF09851 SHOCT: Short C-terminal domain; InterPro: IPR018649 This family of hypothetical prokaryotic proteins has no known function.
Probab=40.60 E-value=36 Score=25.66 Aligned_cols=26 Identities=12% Similarity=0.391 Sum_probs=19.8
Q ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHH
Q 002323 508 FEIYQKKLLESAQVTQEDINRIQEKVN 534 (936)
Q Consensus 508 l~~y~~~Li~eGilt~eei~~i~~~~~ 534 (936)
+..+. .|.+.|++|++|.++.++++.
T Consensus 5 L~~L~-~l~~~G~IseeEy~~~k~~ll 30 (31)
T PF09851_consen 5 LEKLK-ELYDKGEISEEEYEQKKARLL 30 (31)
T ss_pred HHHHH-HHHHcCCCCHHHHHHHHHHHh
Confidence 44444 477899999999999887653
No 172
>cd06586 TPP_enzyme_PYR Pyrimidine (PYR) binding domain of thiamine pyrophosphate (TPP)-dependent enzymes. Thiamine pyrophosphate (TPP) family, pyrimidine (PYR) binding domain; found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this group. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. In the case of 2-oxoisovalerate dehydrogenase (2OXO), sulfopyruvate deca
Probab=38.65 E-value=80 Score=30.84 Aligned_cols=78 Identities=12% Similarity=0.105 Sum_probs=45.8
Q ss_pred eEEEEEecCcccCCCchHHHhhhccCCCCCccccEEEEEEeCCcccc-cCCCCC-CCc-------ch---h--hHHHHHH
Q 002323 392 NMGVLIHGDGSFAGQGVVYETLHLSALPNYTTGGTIHIVVNNQVAFT-TDPRAG-RSS-------QY---C--TDAVVHV 457 (936)
Q Consensus 392 ~v~v~~hGDgA~sGQGvv~EtLNlA~LP~Y~~GGtIhIV~NNQigfT-T~~~~~-rss-------~y---~--tDAV~~a 457 (936)
.++++.+|.|..+.-.-++++. ..++| +|+|+......-. ...... ... .| . .+.....
T Consensus 61 ~v~~~~~gpg~~~~~~~l~~a~-~~~~P------vl~i~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 (154)
T cd06586 61 PVVIVTSGTGLLNAINGLADAA-AEHLP------VVFLIGARGISAQAKQTFQSMFDLGMYRSIPEANISSPSPAELPAG 133 (154)
T ss_pred EEEEEcCCCcHHHHHHHHHHHH-hcCCC------EEEEeCCCChhhhccCcccccCHHHHHHHhhheEEEeCCHHHHHHH
Confidence 6666667999887666666443 44899 9999865443211 110000 000 00 0 0155666
Q ss_pred HHHHHHHHHccCCCEEEEE
Q 002323 458 CELAAEWRQKFHSDVVVDL 476 (936)
Q Consensus 458 ~~~A~e~rr~f~~pvlIdl 476 (936)
+..|++.+...++||+|++
T Consensus 134 ~~~a~~~a~~~~gPv~l~i 152 (154)
T cd06586 134 IDHAIRTAYASQGPVVVRL 152 (154)
T ss_pred HHHHHHHHhcCCCCEEEEc
Confidence 6777777777789999986
No 173
>PF01855 POR_N: Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg; InterPro: IPR002880 This family includes the N-terminal region of the pyruvate ferredoxin oxidoreductase, corresponding to the first two structural domains. This region is involved in inter subunit contacts []. Pyruvate oxidoreductase (POR) catalyses the final step in the fermentation of carbohydrates in anaerobic microorganisms []. This involves the oxidative decarboxylation of pyruvate with the participation of thiamine followed by the transfer of an acetyl moiety to coenzyme A for the synthesis of acetyl-CoA []. The family also includes pyruvate flavodoxin oxidoreductase as encoded by the nifJ gene in cyanobacterium which is required for growth on molecular nitrogen when iron is limited [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2PDA_B 2C3Y_A 2C3P_B 2UZA_A 2C3U_B 2C42_A 1B0P_B 2C3M_A 2C3O_B 1KEK_B ....
Probab=38.61 E-value=47 Score=36.15 Aligned_cols=77 Identities=22% Similarity=0.338 Sum_probs=47.3
Q ss_pred cCCCchH--HHhhhcc---CCCCCccccEEEEEEeC---CcccccCCCCC-----CCc----chhhH--HHHHHHHHHHH
Q 002323 403 FAGQGVV--YETLHLS---ALPNYTTGGTIHIVVNN---QVAFTTDPRAG-----RSS----QYCTD--AVVHVCELAAE 463 (936)
Q Consensus 403 ~sGQGvv--~EtLNlA---~LP~Y~~GGtIhIV~NN---QigfTT~~~~~-----rss----~y~tD--AV~~a~~~A~e 463 (936)
+||+|.. .|.|-++ ++| +|.++.|= .-|.+|.++.+ +.+ -++.| .+++-+..|++
T Consensus 66 ts~~Gl~lm~e~l~~a~~~~~P------~V~~~~~R~g~~~g~~~~~~q~D~~~~~d~~~~vl~p~~~QEa~d~~~~A~~ 139 (230)
T PF01855_consen 66 TSGPGLNLMAEPLYWAAGTELP------IVIVVVQRAGPSPGLSTQPEQDDLMAARDSGWIVLAPSSPQEAYDMTLIAFN 139 (230)
T ss_dssp EECCHHHHHCCCHHHHHHTT--------EEEEEEEB---SSSB--SB-SHHHHHTTTSS-EEEE--SHHHHHHHHHHHHH
T ss_pred ecCCcccccHhHHHHHHHcCCC------EEEEEEECCCCCCCCcCcCChhHHHHHHhcCeEEEeCCCHHHHHHHHHHHHH
Confidence 5778865 4666655 999 88888773 33333433221 100 01112 89999999999
Q ss_pred HHHccCCCEEEEEEeeecCCCCC
Q 002323 464 WRQKFHSDVVVDLVCYRRFGHNE 486 (936)
Q Consensus 464 ~rr~f~~pvlIdlv~YRr~GHne 486 (936)
.+.+++.||++=.-+|+. .|..
T Consensus 140 lAe~~~~PViv~~Dg~~~-sh~~ 161 (230)
T PF01855_consen 140 LAEKYQTPVIVLFDGFLC-SHSR 161 (230)
T ss_dssp HHHHHTSEEEEEEECCCC-TC-E
T ss_pred HHHHHCCCEEEEechhhh-cCcc
Confidence 999999999999988885 2554
No 174
>cd07035 TPP_PYR_POX_like Pyrimidine (PYR) binding domain of POX and related proteins. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of pyruvate oxidase (POX) and related protiens subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. For glyoxylate carboligase, which belongs to this subfamily, but lacks this conserved glutamate, the rate of the initial TPP activation step is reduced but the ensuing steps of the enzymic reaction proceed efficiently. The PYR and PP domains have a common fold, but do not share strong sequence conservatio
Probab=38.16 E-value=53 Score=32.53 Aligned_cols=78 Identities=12% Similarity=0.023 Sum_probs=47.7
Q ss_pred eEEEEEecCcccCCCchHHHhhhccCCCCCccccEEEEEEeCCcccccCC----CCCCC--cchh--------hHHHHHH
Q 002323 392 NMGVLIHGDGSFAGQGVVYETLHLSALPNYTTGGTIHIVVNNQVAFTTDP----RAGRS--SQYC--------TDAVVHV 457 (936)
Q Consensus 392 ~v~v~~hGDgA~sGQGvv~EtLNlA~LP~Y~~GGtIhIV~NNQigfTT~~----~~~rs--s~y~--------tDAV~~a 457 (936)
.++++..|=|..+.-..++++..- ++| +|+|+-+-...-.... .++.. ..++ .+.+...
T Consensus 61 ~v~~~~~gpG~~n~~~~l~~A~~~-~~P------ll~i~~~~~~~~~~~~~~q~~d~~~~~~~~~~~~~~i~~~~~~~~~ 133 (155)
T cd07035 61 GVVLVTSGPGLTNAVTGLANAYLD-SIP------LLVITGQRPTAGEGRGAFQEIDQVALFRPITKWAYRVTSPEEIPEA 133 (155)
T ss_pred EEEEEcCCCcHHHHHHHHHHHHhh-CCC------EEEEeCCCccccccCCcccccCHHHHHHHHhceEEEcCCHHHHHHH
Confidence 455555588887766666666544 999 9999765432211110 01100 0111 1278888
Q ss_pred HHHHHHHHHcc-CCCEEEEE
Q 002323 458 CELAAEWRQKF-HSDVVVDL 476 (936)
Q Consensus 458 ~~~A~e~rr~f-~~pvlIdl 476 (936)
+..|+..+... ++||.|++
T Consensus 134 i~~A~~~a~~~~~gPv~l~i 153 (155)
T cd07035 134 LRRAFRIALSGRPGPVALDL 153 (155)
T ss_pred HHHHHHHhcCCCCCcEEEEe
Confidence 88999888877 79999986
No 175
>cd07039 TPP_PYR_POX Pyrimidine (PYR) binding domain of POX. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of pyruvate oxidase (POX) subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this sub-family. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. TPP-dependent enzymes are multisubunit proteins, the smallest catalytic unit being a dimer-of-active sites. Lactobacillus plantarum POX is a homotetramer (dimer-of-homodimers), having two active sites per homodimer lying between PYR and PP domains of differ
Probab=33.88 E-value=1.8e+02 Score=29.62 Aligned_cols=78 Identities=12% Similarity=0.032 Sum_probs=44.9
Q ss_pred eEEEEEecCcccCCCchHHHhhhccCCCCCccccEEEEEEeCCcccccC--CC--CCCC-----cchh-----hHHHHHH
Q 002323 392 NMGVLIHGDGSFAGQGVVYETLHLSALPNYTTGGTIHIVVNNQVAFTTD--PR--AGRS-----SQYC-----TDAVVHV 457 (936)
Q Consensus 392 ~v~v~~hGDgA~sGQGvv~EtLNlA~LP~Y~~GGtIhIV~NNQigfTT~--~~--~~rs-----s~y~-----tDAV~~a 457 (936)
.++++..|=|+++.-.-++|+. ..++| +|+|+-+-...--.. .. ++.. +.|. .+.+.++
T Consensus 65 ~v~~~t~GpG~~n~~~~l~~A~-~~~~P------vl~I~g~~~~~~~~~~~~q~~d~~~~~~~~tk~~~~v~~~~~~~~~ 137 (164)
T cd07039 65 GVCLGSSGPGAIHLLNGLYDAK-RDRAP------VLAIAGQVPTDELGTDYFQEVDLLALFKDVAVYNETVTSPEQLPEL 137 (164)
T ss_pred EEEEECCCCcHHHHHHHHHHHH-hcCCC------EEEEecCCcccccCCCCCcccCHHHHHHHhhcEEEEeCCHHHHHHH
Confidence 6777777888887555555554 23899 999986544321000 00 0100 0111 1155666
Q ss_pred HHHHHHHHHccCCCEEEEE
Q 002323 458 CELAAEWRQKFHSDVVVDL 476 (936)
Q Consensus 458 ~~~A~e~rr~f~~pvlIdl 476 (936)
++.|++.+...++||+|++
T Consensus 138 i~~A~~~a~~~~GPV~l~i 156 (164)
T cd07039 138 LDRAIRTAIAKRGVAVLIL 156 (164)
T ss_pred HHHHHHHHhcCCCCEEEEe
Confidence 6667766666679999987
No 176
>KOG4166 consensus Thiamine pyrophosphate-requiring enzyme [Amino acid transport and metabolism; Coenzyme transport and metabolism]
Probab=33.50 E-value=1.4e+02 Score=35.70 Aligned_cols=139 Identities=25% Similarity=0.302 Sum_probs=78.5
Q ss_pred hcCCCHHHHHHhhcCCCCCCCCCCCccCCCCcccccccccCCCCCCCceeee-eeccccCCCcccccee-echhHHHHHh
Q 002323 306 VVRKPLRQIFSEFSGGTKPVDEDGLYTGTGDVKYHLGTSYDRPTRGGKRIHL-SLVANPSHLEAVDPVV-VGKTRAKQYY 383 (936)
Q Consensus 306 vlg~p~~~ifaEf~G~~~~~~~G~~~ggsGDVkyHlG~s~~~~~~~g~~I~l-sl~~NPSHLeav~PVa-~G~ArA~q~~ 383 (936)
.+|+.=.+||.|++-+..-. --+| +++|..+.+ .-+.|+||.+.+.|-- .|...|.+-+
T Consensus 88 fvg~tGg~If~emm~rqnV~-------------tVFg------YPGGAilpv~dAi~rS~~f~fvLPrHEQgaghaAegY 148 (675)
T KOG4166|consen 88 FVGRTGGDIFVEMMERQNVE-------------TVFG------YPGGAILPVHDAITRSSSFRFVLPRHEQGAGHAAEGY 148 (675)
T ss_pred ccCCchhHHHHHHHHhcCCc-------------eEee------cCCcceeehHhhhhcCccccccccccccccchhhhhh
Confidence 34667778888888765321 1112 122221111 1246788888888853 3555544433
Q ss_pred cCCCCCCceEEEEEecCcccCCCchHHHhhh--cc-CCCCCccccEEEEEEeCCcc---cccCCCCC----CCcchhhH-
Q 002323 384 SHDVDRTKNMGVLIHGDGSFAGQGVVYETLH--LS-ALPNYTTGGTIHIVVNNQVA---FTTDPRAG----RSSQYCTD- 452 (936)
Q Consensus 384 ~~d~~~~~~v~v~~hGDgA~sGQGvv~EtLN--lA-~LP~Y~~GGtIhIV~NNQig---fTT~~~~~----rss~y~tD- 452 (936)
... .++..|+++..|-||++ +| --|- ++ ..| .||.--|+. |.|+.-.. --++.||-
T Consensus 149 aR~-sgKPGvvlvTSGPGATN---vv-tp~ADAlaDg~P--------lVvftGQVptsaIGtDAFQEadiVgisRScTKw 215 (675)
T KOG4166|consen 149 ARS-SGKPGVVLVTSGPGATN---VV-TPLADALADGVP--------LVVFTGQVPTSAIGTDAFQEADIVGISRSCTKW 215 (675)
T ss_pred hhh-cCCCcEEEEecCCCccc---cc-chhhHHhhcCCc--------EEEEecccchhhcccchhccCCeeeeeecccee
Confidence 221 24458999999999987 21 1111 12 555 455556653 33332110 01344552
Q ss_pred --------HHHHHHHHHHHHHHccC-CCEEEEE
Q 002323 453 --------AVVHVCELAAEWRQKFH-SDVVVDL 476 (936)
Q Consensus 453 --------AV~~a~~~A~e~rr~f~-~pvlIdl 476 (936)
..-+-..+|++.+-.++ |||++|+
T Consensus 216 NvmVkdVedlPrrI~EAFeiATSGRPGPVLVDl 248 (675)
T KOG4166|consen 216 NVMVKDVEDLPRRIEEAFEIATSGRPGPVLVDL 248 (675)
T ss_pred heeeecHHHhhHHHHHHhhhhccCCCCCeEeeC
Confidence 55567788999998888 9999987
No 177
>TIGR03710 OAFO_sf 2-oxoacid:acceptor oxidoreductase, alpha subunit. The genes for this enzyme in Prevotella intermedia 17, Persephonella marina EX-H1 and Picrophilus torridus DSM 9790 are in close proximity to a variety of TCA cycle genes. Persephonella marina and P. torridus are believed to encode complete TCA cycles, and none of these contains the lipoate-based 2-oxoglutarate dehydrogenase (E1/E2/E3) system. That system is presumed to be replaced by this one. In fact, the lipoate system is absent in most organisms possessing a member of this family, providing additional circumstantial evidence that many of these enzymes are capable of acting as 2-oxoglutarate dehydrogenases and supporting flux through TCA cycles in either the forward or reverse directions.
Probab=33.13 E-value=49 Score=40.60 Aligned_cols=75 Identities=19% Similarity=0.207 Sum_probs=52.7
Q ss_pred ccCCCch--HHHhhhcc---CCCCCccccEEEEEEeCCcccccC----CCCC--CCcchh------------hH--HHHH
Q 002323 402 SFAGQGV--VYETLHLS---ALPNYTTGGTIHIVVNNQVAFTTD----PRAG--RSSQYC------------TD--AVVH 456 (936)
Q Consensus 402 A~sGQGv--v~EtLNlA---~LP~Y~~GGtIhIV~NNQigfTT~----~~~~--rss~y~------------tD--AV~~ 456 (936)
|+||+|. .+|.|.+| .+| +|.++.|= -|-+|. .+.+ ....|. .| .+++
T Consensus 266 aTSg~Gl~lm~E~l~~a~~~~~P------~Vi~~~~R-~gpstg~~t~~eq~D~~~~~~~~hgd~~~ivl~p~~~qEa~d 338 (562)
T TIGR03710 266 ATSGPGFALMTEALGLAGMTETP------LVIVDVQR-GGPSTGLPTKTEQSDLLFALYGGHGEFPRIVLAPGSPEECFY 338 (562)
T ss_pred cCCCCChhHhHHHHhHHHhccCC------EEEEEccc-CCCCCCCCCCccHHHHHHHhcCCCCCcCceEEcCCCHHHHHH
Confidence 4678886 67888888 899 77777664 445442 2211 112222 12 8999
Q ss_pred HHHHHHHHHHccCCCEEEEEEeeecCCCC
Q 002323 457 VCELAAEWRQKFHSDVVVDLVCYRRFGHN 485 (936)
Q Consensus 457 a~~~A~e~rr~f~~pvlIdlv~YRr~GHn 485 (936)
.+..|++.+.+++-||++=..+|. +|+
T Consensus 339 ~~~~Af~lAe~~~~PViv~~D~~l--~~~ 365 (562)
T TIGR03710 339 LAIEAFNLAEKYQTPVIVLSDQYL--ANS 365 (562)
T ss_pred HHHHHHHHHHHhcCCEEEEechHH--hCC
Confidence 999999999999999999999985 554
No 178
>PF02776 TPP_enzyme_N: Thiamine pyrophosphate enzyme, N-terminal TPP binding domain; InterPro: IPR012001 A number of enzymes require thiamine pyrophosphate (TPP) (vitamin B1) as a cofactor. It has been shown [] that some of these enzymes are structurally related. This represents the N-terminal TPP binding domain of TPP enzymes.; GO: 0030976 thiamine pyrophosphate binding; PDB: 3HWX_1 3FLM_B 3HWW_A 2JLC_A 2JLA_A 2VBG_A 2VBF_B 2Q29_A 2Q27_B 2Q28_B ....
Probab=32.67 E-value=2.2e+02 Score=28.90 Aligned_cols=121 Identities=15% Similarity=0.165 Sum_probs=74.8
Q ss_pred ceEEEccCcchhHHHHHHhhhccCCCCcceeeeccch-hhhhhHHHHHHHHHhhhhhhhcCccccEEEcC---ccCCCCC
Q 002323 680 MFTVSNSSLSEFGVLGFELGYSMENPNSLVLWEAQFG-DFANGAQVIFDQFLSSGESKWLRQTGLVVLLP---HGYDGQG 755 (936)
Q Consensus 680 ~~rV~nspLSE~avlG~e~G~sl~g~~~LviwEaqFg-DF~n~Aq~iidqfi~~~~~kw~~~s~lv~~lP---hG~~G~G 755 (936)
.++++. ...|.+....+-||+..+-++- +.=.+.| -+.|. ++....-|..+.||+++.. ....+++
T Consensus 39 ~i~~i~-~~~E~~A~~~A~g~ar~~g~~~-v~~~~~GpG~~n~--------~~~l~~A~~~~~Pvl~i~g~~~~~~~~~~ 108 (172)
T PF02776_consen 39 GIRFIP-VRHEQGAAFMADGYARATGRPG-VVIVTSGPGATNA--------LTGLANAYADRIPVLVITGQRPSAGEGRG 108 (172)
T ss_dssp TSEEEE--SSHHHHHHHHHHHHHHHSSEE-EEEEETTHHHHTT--------HHHHHHHHHTT-EEEEEEEESSGGGTTTT
T ss_pred ceeeec-ccCcchhHHHHHHHHHhhccce-EEEeecccchHHH--------HHHHhhcccceeeEEEEecccchhhhccc
Confidence 466666 6789999999999998765553 2223332 23333 2222223444789888764 3335666
Q ss_pred ccccCchhhhhhhcCCCCCCcccCCCchhhhhccccceEEEEcCCHHHHHHHHHHHHh---cCCCCcEEEEccccccCC
Q 002323 756 PEHSSARLERFLQMSDDNPFVIPEMDPTLRKQIQECNWQIVNVTTPANYFHVLRRQIH---RGFRKPLIVISPKNLLRH 831 (936)
Q Consensus 756 peHSs~RiERfLQl~~~~~~~~~~~pg~~~~~~~~~N~~Vv~pstpa~~fhlLrrq~~---r~~~~Pli~~~pK~Llr~ 831 (936)
..|......+.++-+ ---...+++|.+.-..|+++++ ...+.|+.+--|+-++..
T Consensus 109 ~~q~~~d~~~~~~~~---------------------~k~~~~v~~~~~~~~~~~~A~~~a~~~~~gPv~l~ip~dv~~~ 166 (172)
T PF02776_consen 109 AFQQEIDQQSLFRPV---------------------TKWSYRVTSPDDLPEALDRAFRAATSGRPGPVYLEIPQDVQEA 166 (172)
T ss_dssp STTSSTHHHHHHGGG---------------------SSEEEEECSGGGHHHHHHHHHHHHHHCSTSEEEEEEEHHHHTS
T ss_pred ccccchhhcchhccc---------------------cchhcccCCHHHHHHHHHHHHHHhccCCCccEEEEcChhHhhC
Confidence 666333333333311 1235667899999999999886 567999999999888754
No 179
>KOG1615 consensus Phosphoserine phosphatase [Amino acid transport and metabolism]
Probab=32.63 E-value=4.2e+02 Score=28.83 Aligned_cols=98 Identities=20% Similarity=0.288 Sum_probs=64.8
Q ss_pred hhhhhHHHHHHHHhhCCCCcEEecCCCCchHHHHHhhcCCCHHHHHHhhcCCCCCCCCCCCccCCCCcccccccccCCCC
Q 002323 270 TLIPGMKEMFDRAADLGVESIVIGMPHRGRLNVLGNVVRKPLRQIFSEFSGGTKPVDEDGLYTGTGDVKYHLGTSYDRPT 349 (936)
Q Consensus 270 ali~gl~~li~~A~~~Gv~DivigM~HRgrlnvLa~vlg~p~~~ifaEf~G~~~~~~~G~~~ggsGDVkyHlG~s~~~~~ 349 (936)
.+-||+.+++..--+.|++=++++=-.|.-.+.++..||.|...+|+..+-- ...| |||= +...-.+
T Consensus 88 ~lT~Gi~eLv~~L~~~~~~v~liSGGF~~~i~~Va~~Lgi~~~n~yAN~l~f---d~~G---------k~~g-fd~~~pt 154 (227)
T KOG1615|consen 88 TLTPGIRELVSRLHARGTQVYLISGGFRQLIEPVAEQLGIPKSNIYANELLF---DKDG---------KYLG-FDTNEPT 154 (227)
T ss_pred ccCCCHHHHHHHHHHcCCeEEEEcCChHHHHHHHHHHhCCcHhhhhhheeee---ccCC---------cccc-cccCCcc
Confidence 4568888888766677887777766899999999999999999999875431 1111 2432 1211111
Q ss_pred CCCceeeeeeccccCCCccccceeechhHHHHHhcCCCCCCceEEEEEecCcccC
Q 002323 350 RGGKRIHLSLVANPSHLEAVDPVVVGKTRAKQYYSHDVDRTKNMGVLIHGDGSFA 404 (936)
Q Consensus 350 ~~g~~I~lsl~~NPSHLeav~PVa~G~ArA~q~~~~d~~~~~~v~v~~hGDgA~s 404 (936)
..+ -|++-+.+..++ +.+.-.++..||||+-
T Consensus 155 ----------------sds-----ggKa~~i~~lrk---~~~~~~~~mvGDGatD 185 (227)
T KOG1615|consen 155 ----------------SDS-----GGKAEVIALLRK---NYNYKTIVMVGDGATD 185 (227)
T ss_pred ----------------ccC-----CccHHHHHHHHh---CCChheeEEecCCccc
Confidence 111 166666665544 2346789999999997
No 180
>PRK13029 2-oxoacid ferredoxin oxidoreductase; Provisional
Probab=32.53 E-value=2e+02 Score=38.48 Aligned_cols=40 Identities=5% Similarity=-0.077 Sum_probs=31.1
Q ss_pred ccceEEEEcCCHHHHHHHHHHHHh--cCCCCcEEEEcccccc
Q 002323 790 ECNWQIVNVTTPANYFHVLRRQIH--RGFRKPLIVISPKNLL 829 (936)
Q Consensus 790 ~~N~~Vv~pstpa~~fhlLrrq~~--r~~~~Pli~~~pK~Ll 829 (936)
..+|-|.+|+++.+++.+.+-++. |.+.-||++=.-.-+-
T Consensus 175 ~a~iPvl~Ps~~qE~~d~~~~a~~lSr~~g~~V~lr~~t~v~ 216 (1186)
T PRK13029 175 AWGIPVLYPASVQDYLDYGLHGWAMSRYSGLWVGMKCVTEVV 216 (1186)
T ss_pred HcCCceeCCCCHHHHHHHHHHHHHHHHHhCCCEEEEEeeeee
Confidence 346999999999999988887654 8889999985444433
No 181
>PF10925 DUF2680: Protein of unknown function (DUF2680); InterPro: IPR024485 Members in this family of proteins are annotated as YckD however currently no function is known.
Probab=31.22 E-value=93 Score=27.08 Aligned_cols=31 Identities=19% Similarity=0.250 Sum_probs=25.3
Q ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHHHHHHH
Q 002323 510 IYQKKLLESAQVTQEDINRIQEKVNTILNEE 540 (936)
Q Consensus 510 ~y~~~Li~eGilt~eei~~i~~~~~~~l~~a 540 (936)
..-++.++.|.+|+|+.+.|++.+....+..
T Consensus 22 ~~idk~Ve~G~iTqeqAd~ik~~id~~~~~~ 52 (59)
T PF10925_consen 22 QIIDKYVEAGVITQEQADAIKKHIDQRQEYM 52 (59)
T ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHHHHHHH
Confidence 4555678899999999999999888877654
No 182
>PRK07525 sulfoacetaldehyde acetyltransferase; Validated
Probab=28.36 E-value=1.6e+02 Score=36.12 Aligned_cols=78 Identities=9% Similarity=0.073 Sum_probs=47.6
Q ss_pred eEEEEEecCcccCCCchHHHhhhccCCCCCccccEEEEEEeC---CcccccCCC-CCCC-----cchh-----hHHHHHH
Q 002323 392 NMGVLIHGDGSFAGQGVVYETLHLSALPNYTTGGTIHIVVNN---QVAFTTDPR-AGRS-----SQYC-----TDAVVHV 457 (936)
Q Consensus 392 ~v~v~~hGDgA~sGQGvv~EtLNlA~LP~Y~~GGtIhIV~NN---QigfTT~~~-~~rs-----s~y~-----tDAV~~a 457 (936)
.++++..|=|+++.-+-++++. ..++| +|+|+-.= ..+--+-.+ ++.+ +.|+ .+.+..+
T Consensus 70 gv~~~t~GPG~~n~~~gi~~A~-~~~~P------vl~I~g~~~~~~~~~~~~q~~d~~~l~~~~tk~~~~i~~~~~~~~~ 142 (588)
T PRK07525 70 GMVIGQNGPGITNFVTAVATAY-WAHTP------VVLVTPQAGTKTIGQGGFQEAEQMPMFEDMTKYQEEVRDPSRMAEV 142 (588)
T ss_pred EEEEEcCCccHHHHHHHHHHHh-hcCCC------EEEEeCCCCcccCCCCCCcccchhhhhhhheeEEEECCCHHHHHHH
Confidence 6777777999998777777776 44899 99998211 111000000 1100 1111 1256677
Q ss_pred HHHHHHHHHccCCCEEEEE
Q 002323 458 CELAAEWRQKFHSDVVVDL 476 (936)
Q Consensus 458 ~~~A~e~rr~f~~pvlIdl 476 (936)
++.|+..+...+|||+|++
T Consensus 143 i~rA~~~A~~~~GPV~i~i 161 (588)
T PRK07525 143 LNRVFDKAKRESGPAQINI 161 (588)
T ss_pred HHHHHHHHhcCCCCEEEEc
Confidence 7777777778889999988
No 183
>cd07035 TPP_PYR_POX_like Pyrimidine (PYR) binding domain of POX and related proteins. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of pyruvate oxidase (POX) and related protiens subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. For glyoxylate carboligase, which belongs to this subfamily, but lacks this conserved glutamate, the rate of the initial TPP activation step is reduced but the ensuing steps of the enzymic reaction proceed efficiently. The PYR and PP domains have a common fold, but do not share strong sequence conservatio
Probab=27.41 E-value=5.7e+02 Score=25.15 Aligned_cols=114 Identities=19% Similarity=0.278 Sum_probs=63.6
Q ss_pred ceEEEccCcchhHHHHHHhhhccCCCCcceeeeccch-hhhhhHHHHHHHHHhhhhhhhcCccccEEEcCc-cCCCCCcc
Q 002323 680 MFTVSNSSLSEFGVLGFELGYSMENPNSLVLWEAQFG-DFANGAQVIFDQFLSSGESKWLRQTGLVVLLPH-GYDGQGPE 757 (936)
Q Consensus 680 ~~rV~nspLSE~avlG~e~G~sl~g~~~LviwEaqFg-DF~n~Aq~iidqfi~~~~~kw~~~s~lv~~lPh-G~~G~Gpe 757 (936)
.++++. ..+|.+.++.+.||+..+-++ .+.=++.| -|.|. +..+. .-|..+.||+++... +..+.+..
T Consensus 34 ~~~~i~-~~~E~~A~~~A~g~~~~~~~~-~v~~~~~gpG~~n~----~~~l~----~A~~~~~Pll~i~~~~~~~~~~~~ 103 (155)
T cd07035 34 GIRYIL-VRHEQGAVGMADGYARATGKP-GVVLVTSGPGLTNA----VTGLA----NAYLDSIPLLVITGQRPTAGEGRG 103 (155)
T ss_pred CCEEEE-eCCHHHHHHHHHHHHHHHCCC-EEEEEcCCCcHHHH----HHHHH----HHHhhCCCEEEEeCCCccccccCC
Confidence 356655 459999999999999986543 23334433 23332 23322 223337899988653 22222222
Q ss_pred ccC--chhhhhhhcCCCCCCcccCCCchhhhhccccceEEEEcCCHHHHHHHHHHHHhcC--C-CCcEEEEcc
Q 002323 758 HSS--ARLERFLQMSDDNPFVIPEMDPTLRKQIQECNWQIVNVTTPANYFHVLRRQIHRG--F-RKPLIVISP 825 (936)
Q Consensus 758 HSs--~RiERfLQl~~~~~~~~~~~pg~~~~~~~~~N~~Vv~pstpa~~fhlLrrq~~r~--~-~~Pli~~~p 825 (936)
+-+ ...+-|-++| .+ ...+++|++....+.++++.- . +.|+.+.-|
T Consensus 104 ~~q~~d~~~~~~~~~---------------------~~-~~~i~~~~~~~~~i~~A~~~a~~~~~gPv~l~ip 154 (155)
T cd07035 104 AFQEIDQVALFRPIT---------------------KW-AYRVTSPEEIPEALRRAFRIALSGRPGPVALDLP 154 (155)
T ss_pred cccccCHHHHHHHHh---------------------ce-EEEcCCHHHHHHHHHHHHHHhcCCCCCcEEEEec
Confidence 111 1111111111 13 455679999999999999832 2 569887655
No 184
>PF08312 cwf21: cwf21 domain; InterPro: IPR013170 The cwf21 domain is found in proteins involved in mRNA splicing. Proteins containing this domain have been isolated as a subcomplex of the splicosome in Schizosaccharomyces pombe (Fission yeast) []. In yeast, this domain binds the protein Prp8p [], a large and highly conserved U5 snRNP protein which has been proposed as a protein cofactor at the spliceosomal catalytic centre []. The cwf21 domain is found in, amongst others, the small Cwc21p protein in yeast as well as in the much larger human ortholog SRm300 (serine/arginine repetitive matrix protein). ; PDB: 2E62_A.
Probab=27.30 E-value=1.3e+02 Score=24.95 Aligned_cols=32 Identities=22% Similarity=0.253 Sum_probs=25.3
Q ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHH
Q 002323 508 FEIYQKKLLESAQVTQEDINRIQEKVNTILNEE 540 (936)
Q Consensus 508 l~~y~~~Li~eGilt~eei~~i~~~~~~~l~~a 540 (936)
+..|++.|-++|+ ++++|++-.+.+++.+.+.
T Consensus 13 ~~elrd~LEe~g~-~~eeIe~kv~~~R~~L~~~ 44 (46)
T PF08312_consen 13 CLELRDELEEQGY-SEEEIEEKVDELRKKLLEE 44 (46)
T ss_dssp HHHHHHHHHHHT---HHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHhc
Confidence 4459999999997 9999999999999888764
No 185
>PRK08367 porA pyruvate ferredoxin oxidoreductase subunit alpha; Reviewed
Probab=26.44 E-value=99 Score=36.35 Aligned_cols=77 Identities=16% Similarity=0.235 Sum_probs=50.8
Q ss_pred ccCCCchH--HHhhhcc---CCCCCccccEEEEEEeCCcccccCCC-CCCCc----------chhhH--HHHHHHHHHHH
Q 002323 402 SFAGQGVV--YETLHLS---ALPNYTTGGTIHIVVNNQVAFTTDPR-AGRSS----------QYCTD--AVVHVCELAAE 463 (936)
Q Consensus 402 A~sGQGvv--~EtLNlA---~LP~Y~~GGtIhIV~NNQigfTT~~~-~~rss----------~y~tD--AV~~a~~~A~e 463 (936)
|+||||.. +|.|-++ .|| +|+++.|=-.+-.++.. ++..+ .|+.| .++.-+..|.+
T Consensus 79 aTS~~Gl~lm~E~l~~aag~~lP------~V~vv~~R~~~~p~~i~~d~~D~~~~rd~g~~~~~a~~~QEa~D~~~~Af~ 152 (394)
T PRK08367 79 ATASQGLALMHEVLFIAAGMRLP------IVMAIGNRALSAPINIWNDWQDTISQRDTGWMQFYAENNQEALDLILIAFK 152 (394)
T ss_pred eeccchHHHHhhHHHHHHHccCC------EEEEECCCCCCCCCCcCcchHHHHhccccCeEEEeCCCHHHHHHHHHHHHH
Confidence 46789975 6888776 999 88887655433211221 11111 12223 88888889999
Q ss_pred HHH--ccCCCEEEEEEeeecCCCC
Q 002323 464 WRQ--KFHSDVVVDLVCYRRFGHN 485 (936)
Q Consensus 464 ~rr--~f~~pvlIdlv~YRr~GHn 485 (936)
.+. +..-||++=..+||. +|.
T Consensus 153 lAE~~~~~~Pviv~~Dgf~~-sH~ 175 (394)
T PRK08367 153 VAEDERVLLPAMVGFDAFIL-THT 175 (394)
T ss_pred HHHHhCcCCCEEEEechhhh-cCc
Confidence 988 555899999999985 563
No 186
>PRK06457 pyruvate dehydrogenase; Provisional
Probab=24.88 E-value=1.6e+02 Score=35.78 Aligned_cols=35 Identities=9% Similarity=0.245 Sum_probs=27.8
Q ss_pred hhccccceEEEEcCCHHHHHHHHHHHHhcCCCCcEEE
Q 002323 786 KQIQECNWQIVNVTTPANYFHVLRRQIHRGFRKPLIV 822 (936)
Q Consensus 786 ~~~~~~N~~Vv~pstpa~~fhlLrrq~~r~~~~Pli~ 822 (936)
+-.+..+.+-...+|+.+....|++++. .++|.||
T Consensus 480 ~lA~a~G~~~~~v~~~~el~~al~~a~~--~~~p~lI 514 (549)
T PRK06457 480 KIAESIGFKGFRLEEPKEAEEIIEEFLN--TKGPAVL 514 (549)
T ss_pred HHHHHCCCeEEEeCCHHHHHHHHHHHHh--CCCCEEE
Confidence 3344456787888999999999999987 6788875
No 187
>PRK07119 2-ketoisovalerate ferredoxin reductase; Validated
Probab=23.86 E-value=1.1e+02 Score=35.46 Aligned_cols=74 Identities=15% Similarity=0.155 Sum_probs=50.1
Q ss_pred cCCCch--HHHhhhcc---CCCCCccccEEEEEEeCCccccc-C-CCCCCCcchh----------------hH--HHHHH
Q 002323 403 FAGQGV--VYETLHLS---ALPNYTTGGTIHIVVNNQVAFTT-D-PRAGRSSQYC----------------TD--AVVHV 457 (936)
Q Consensus 403 ~sGQGv--v~EtLNlA---~LP~Y~~GGtIhIV~NNQigfTT-~-~~~~rss~y~----------------tD--AV~~a 457 (936)
+||||. -+|.|+++ .+| ++.+++|=- |=+| . ..+|....|. +| .+++-
T Consensus 78 TSg~Gl~lm~E~l~~a~~~e~P------~v~v~v~R~-~p~~g~t~~eq~D~~~~~~~~ghgd~~~~vl~p~~~qEa~d~ 150 (352)
T PRK07119 78 SSSPGISLKQEGISYLAGAELP------CVIVNIMRG-GPGLGNIQPSQGDYFQAVKGGGHGDYRLIVLAPSSVQEMVDL 150 (352)
T ss_pred cCcchHHHHHHHHHHHHHccCC------EEEEEeccC-CCCCCCCcchhHHHHHHHhcCCCCCcceEEEeCCCHHHHHHH
Confidence 378997 57888888 899 888877733 3333 1 1111111111 12 88999
Q ss_pred HHHHHHHHHccCCCEEEEEEeeecCCCC
Q 002323 458 CELAAEWRQKFHSDVVVDLVCYRRFGHN 485 (936)
Q Consensus 458 ~~~A~e~rr~f~~pvlIdlv~YRr~GHn 485 (936)
+..|++.+.+++-||++=..+| .+|.
T Consensus 151 ~~~Af~lAE~~~~PViv~~D~~--lsh~ 176 (352)
T PRK07119 151 TMLAFDLADKYRNPVMVLGDGV--LGQM 176 (352)
T ss_pred HHHHHHHHHHhCCCEEEEcchh--hhCc
Confidence 9999999999999999988885 3665
No 188
>PF02776 TPP_enzyme_N: Thiamine pyrophosphate enzyme, N-terminal TPP binding domain; InterPro: IPR012001 A number of enzymes require thiamine pyrophosphate (TPP) (vitamin B1) as a cofactor. It has been shown [] that some of these enzymes are structurally related. This represents the N-terminal TPP binding domain of TPP enzymes.; GO: 0030976 thiamine pyrophosphate binding; PDB: 3HWX_1 3FLM_B 3HWW_A 2JLC_A 2JLA_A 2VBG_A 2VBF_B 2Q29_A 2Q27_B 2Q28_B ....
Probab=22.65 E-value=2.6e+02 Score=28.36 Aligned_cols=78 Identities=10% Similarity=0.080 Sum_probs=50.5
Q ss_pred eEEEEEecCcccCCCchHHHhhhccCCCCCccccEEEEEEeCCcccccCCCCC-CC---------cchh-----hHHHHH
Q 002323 392 NMGVLIHGDGSFAGQGVVYETLHLSALPNYTTGGTIHIVVNNQVAFTTDPRAG-RS---------SQYC-----TDAVVH 456 (936)
Q Consensus 392 ~v~v~~hGDgA~sGQGvv~EtLNlA~LP~Y~~GGtIhIV~NNQigfTT~~~~~-rs---------s~y~-----tDAV~~ 456 (936)
.++++..|=|+++.-..++++ ...+.| +|+|+-.-...-......+ .. +.|+ .|.+..
T Consensus 66 ~v~~~~~GpG~~n~~~~l~~A-~~~~~P------vl~i~g~~~~~~~~~~~~q~~~d~~~~~~~~~k~~~~v~~~~~~~~ 138 (172)
T PF02776_consen 66 GVVIVTSGPGATNALTGLANA-YADRIP------VLVITGQRPSAGEGRGAFQQEIDQQSLFRPVTKWSYRVTSPDDLPE 138 (172)
T ss_dssp EEEEEETTHHHHTTHHHHHHH-HHTT-E------EEEEEEESSGGGTTTTSTTSSTHHHHHHGGGSSEEEEECSGGGHHH
T ss_pred eEEEeecccchHHHHHHHhhc-ccceee------EEEEecccchhhhcccccccchhhcchhccccchhcccCCHHHHHH
Confidence 677777777888766666665 344999 9999877655444321111 00 1111 127778
Q ss_pred HHHHHHHHH-HccCCCEEEEE
Q 002323 457 VCELAAEWR-QKFHSDVVVDL 476 (936)
Q Consensus 457 a~~~A~e~r-r~f~~pvlIdl 476 (936)
+++.|+..+ ...++||+|++
T Consensus 139 ~~~~A~~~a~~~~~gPv~l~i 159 (172)
T PF02776_consen 139 ALDRAFRAATSGRPGPVYLEI 159 (172)
T ss_dssp HHHHHHHHHHHCSTSEEEEEE
T ss_pred HHHHHHHHhccCCCccEEEEc
Confidence 888888888 77889999997
No 189
>cd07037 TPP_PYR_MenD Pyrimidine (PYR) binding domain of 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexadiene-1-carboxylate synthase (MenD) and related proteins. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexadiene-1-carboxylate (SEPHCHC) synthase (MenD) subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this sub-family. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. TPP-dependent enzymes are multisubunit proteins, the smallest catalytic unit being a dim
Probab=22.37 E-value=1.8e+02 Score=29.88 Aligned_cols=78 Identities=12% Similarity=0.106 Sum_probs=47.9
Q ss_pred eEEEEEecCcccCCCchHHHhhhccCCCCCccccEEEEEEeCCccc---ccCCC-CCCC-----cchh---h--HH----
Q 002323 392 NMGVLIHGDGSFAGQGVVYETLHLSALPNYTTGGTIHIVVNNQVAF---TTDPR-AGRS-----SQYC---T--DA---- 453 (936)
Q Consensus 392 ~v~v~~hGDgA~sGQGvv~EtLNlA~LP~Y~~GGtIhIV~NNQigf---TT~~~-~~rs-----s~y~---t--DA---- 453 (936)
.++++..|=|++++-.-++|+. ..+.| +|+|+-+-.... .+... ++.+ ++|+ + +.
T Consensus 62 gv~~~t~GpG~~n~~~gl~~A~-~~~~P------vl~i~g~~~~~~~~~~~~q~~d~~~l~~~vtk~~~~v~~~~~~~~~ 134 (162)
T cd07037 62 VAVVCTSGTAVANLLPAVVEAY-YSGVP------LLVLTADRPPELRGTGANQTIDQVGLFGDYVRWSVDLPPPEDDDDL 134 (162)
T ss_pred EEEEECCchHHHHHhHHHHHHH-hcCCC------EEEEECCCCHHhcCCCCCcccchhhhccceeeEEEecCCcccchhH
Confidence 6667777888877666666665 34888 888875432211 00000 1100 1111 0 13
Q ss_pred --HHHHHHHHHHHHHccC-CCEEEEE
Q 002323 454 --VVHVCELAAEWRQKFH-SDVVVDL 476 (936)
Q Consensus 454 --V~~a~~~A~e~rr~f~-~pvlIdl 476 (936)
+.++++.|+..++.++ |||+||+
T Consensus 135 ~~~~~~i~~A~~~A~~~~~GPv~l~i 160 (162)
T cd07037 135 WYLLRLANRAVLEALSAPPGPVHLNL 160 (162)
T ss_pred HHHHHHHHHHHHHHhCCCCCCEEEec
Confidence 7889999999999887 8999987
No 190
>KOG3350 consensus Uncharacterized conserved protein [Function unknown]
Probab=21.62 E-value=67 Score=34.07 Aligned_cols=38 Identities=16% Similarity=0.329 Sum_probs=25.9
Q ss_pred CceeEeecCCCCCCCC------------CCCccEEEEeCchhHHHHHHhh
Q 002323 855 TRFKRLIKDQNGHSDL------------EEGIRRLVLCSGKVFITSLMKG 892 (936)
Q Consensus 855 ~~F~~vi~d~~~~~~~------------~~~v~rvilcsGkvyydL~~~r 892 (936)
+.|-.||.||--...+ ...-+|||+|||-|.=+-+.++
T Consensus 134 ~~fdiivaDPPfL~~eCl~Kts~tik~L~r~~~kvilCtGeimee~~s~~ 183 (217)
T KOG3350|consen 134 AHFDIIVADPPFLSEECLAKTSETIKRLQRNQKKVILCTGEIMEEWASAL 183 (217)
T ss_pred hcccEEEeCCccccchhhhhhHHHHHHHhcCCceEEEechhHhHHHHHHH
Confidence 6799999998531110 0122499999999987776655
No 191
>PRK08569 rpl18p 50S ribosomal protein L18P; Reviewed
Probab=21.12 E-value=4.1e+02 Score=28.58 Aligned_cols=87 Identities=22% Similarity=0.143 Sum_probs=55.4
Q ss_pred HHHHHHHHHHHHHH-ccCCCEEEEEEeeecC-------------------CCCCCCCCCC--CC---HHHHHHHHcCCCH
Q 002323 453 AVVHVCELAAEWRQ-KFHSDVVVDLVCYRRF-------------------GHNEIDEPSF--TQ---PKMYQVIRSHPSA 507 (936)
Q Consensus 453 AV~~a~~~A~e~rr-~f~~pvlIdlv~YRr~-------------------GHne~Ddp~y--tq---p~~y~~i~~~~dp 507 (936)
|++.+-.++.+.+. ++-.-|++|.-.||.+ .|||.=-|.| -. =.+|..--+..|.
T Consensus 81 AAy~vG~llA~ral~kGi~~vvfDrGg~~yh~gGRV~A~akgArd~GL~fPh~~~~~p~~~ri~G~Hia~y~~~l~~e~y 160 (193)
T PRK08569 81 AAYLTGLLAGKKALKAGVEEAVLDIGLHRPTKGSRVFAALKGAIDAGLEIPHGEEVLPDEDRIRGEHIAEYAESLKEENY 160 (193)
T ss_pred HHHHHHHHHHHHHHHCCCCEEEEecCCccccCCccHHHHHHHHHHcCCcCCCCCCcCCCccccccchHHHHHHHHhhhHH
Confidence 77777766666665 4447899999999998 7887644432 00 1122222123344
Q ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHH
Q 002323 508 FEIYQKKLLESAQVTQEDINRIQEKVNTILNEEF 541 (936)
Q Consensus 508 l~~y~~~Li~eGilt~eei~~i~~~~~~~l~~a~ 541 (936)
-..|.++| +.| ++++++.++-+++.+.|.+++
T Consensus 161 ~~~Fs~y~-~~g-~~~~~l~~~~~~~~~~i~~~~ 192 (193)
T PRK08569 161 KKQFSKYL-ERG-LDPEDLPEHFEEVKEKILEEY 192 (193)
T ss_pred HHHHHHHH-hcC-CCHHHHHHHHHHHHHHHHHhc
Confidence 44555554 556 788999988888888887654
No 192
>TIGR02176 pyruv_ox_red pyruvate:ferredoxin (flavodoxin) oxidoreductase, homodimeric. This model represents a single chain form of pyruvate:ferredoxin (or flavodoxin) oxidoreductase. This enzyme may transfer electrons to nitrogenase in nitrogen-fixing species. Portions of this protein are homologous to gamma subunit of the four subunit pyruvate:ferredoxin (flavodoxin) oxidoreductase.
Probab=20.65 E-value=2.9e+02 Score=37.13 Aligned_cols=37 Identities=24% Similarity=0.213 Sum_probs=23.6
Q ss_pred eEEEEEecCcccCCCc--hHHHhhhccCCCCCccccEEEEEEeCCc
Q 002323 392 NMGVLIHGDGSFAGQG--VVYETLHLSALPNYTTGGTIHIVVNNQV 435 (936)
Q Consensus 392 ~v~v~~hGDgA~sGQG--vv~EtLNlA~LP~Y~~GGtIhIV~NNQi 435 (936)
.-++++-|||.+-+-| -++=++ ..+.. +.+||.||+.
T Consensus 952 ~sv~~~~GDG~~~diG~~~l~~~~-~r~~~------v~~i~~dne~ 990 (1165)
T TIGR02176 952 KSVWIIGGDGWAYDIGYGGLDHVL-ASGKD------VNVLVMDTEV 990 (1165)
T ss_pred ceeEEEecchhhhccCccchHHHH-HcCCC------eEEEEECCcc
Confidence 3588899999554333 222222 13677 8899999986
No 193
>PRK12474 hypothetical protein; Provisional
Probab=20.55 E-value=2.2e+02 Score=34.30 Aligned_cols=78 Identities=19% Similarity=0.145 Sum_probs=47.7
Q ss_pred eEEEEEecCcccCCCchHHHhhhccCCCCCccccEEEEEEeCCccccc-CC---CCCC-----Ccchh-----hHHHHHH
Q 002323 392 NMGVLIHGDGSFAGQGVVYETLHLSALPNYTTGGTIHIVVNNQVAFTT-DP---RAGR-----SSQYC-----TDAVVHV 457 (936)
Q Consensus 392 ~v~v~~hGDgA~sGQGvv~EtLNlA~LP~Y~~GGtIhIV~NNQigfTT-~~---~~~r-----ss~y~-----tDAV~~a 457 (936)
.++++..|=|++++-.-++++. ..+.| +|+|+-.....-.. .. .++. -+.|+ .|.+.++
T Consensus 70 gv~~~t~GpG~~N~~~gl~~A~-~d~~P------vl~i~G~~~~~~~~~~~~q~~d~~~~~~~vtk~~~~v~~~~~~~~~ 142 (518)
T PRK12474 70 AVTLLHLGPGLANGLANLHNAR-RAASP------IVNIVGDHAVEHLQYDAPLTSDIDGFARPVSRWVHRSASAGAVDSD 142 (518)
T ss_pred EEEEEccchhHhHhHHHHHHHh-hcCCC------EEEEeccCchhhcCCCCccccCHHHhhhcccceeeecCCHHHHHHH
Confidence 6777777999888666666654 34899 99988543211100 00 0110 01221 1266777
Q ss_pred HHHHHHHHHccC-CCEEEEE
Q 002323 458 CELAAEWRQKFH-SDVVVDL 476 (936)
Q Consensus 458 ~~~A~e~rr~f~-~pvlIdl 476 (936)
.+.|+..+..+. +||+|++
T Consensus 143 i~rA~~~A~~~~~GPV~l~i 162 (518)
T PRK12474 143 VARAVQAAQSAPGGIATLIM 162 (518)
T ss_pred HHHHHHHHhcCCCCcEEEEe
Confidence 788888777776 9999988
No 194
>PRK08611 pyruvate oxidase; Provisional
Probab=20.30 E-value=1.8e+02 Score=35.66 Aligned_cols=35 Identities=17% Similarity=0.250 Sum_probs=27.5
Q ss_pred hhccccceEEEEcCCHHHHHHHHHHHHhcCCCCcEEE
Q 002323 786 KQIQECNWQIVNVTTPANYFHVLRRQIHRGFRKPLIV 822 (936)
Q Consensus 786 ~~~~~~N~~Vv~pstpa~~fhlLrrq~~r~~~~Pli~ 822 (936)
+-.+..+.+-+..+|+.+....|+.++. .++|.||
T Consensus 491 ~lA~a~G~~~~~v~~~~eL~~al~~a~~--~~~p~lI 525 (576)
T PRK08611 491 KFAEACGGKGYRVEKAEELDPAFEEALA--QDKPVII 525 (576)
T ss_pred HHHHHCCCeEEEeCCHHHHHHHHHHHHh--CCCCEEE
Confidence 3344456777888999999999999887 6788865
No 195
>cd08325 CARD_CASP1-like Caspase activation and recruitment domain found in Caspase-1 and related proteins. Caspase activation and recruitment domain (CARD) similar to those found in Caspase-1 (CASP1, ICE) and related proteins, including CARD-only proteins such as ICEBERG or CARD18, INCA (CARD17), CARD16 (COP1, PSEUDO-ICE), CARD8 (DACAR, NDPP1, TUCAN), and CARD12 (NLRC4), as well as ICE-like caspases such as CASP12, CASP5 (ICH-3) and CASP4 (TX, ICH-2). Caspases are aspartate-specific cysteine proteases with functions in apoptosis and immune signaling. CASP1 plays a central role in the cellular response to a wide variety of microbial and non-microbial stimuli, being activated by the inflammasome or the pyroptosome. CARD8 binds itself and the initiator caspase-9, interfering with the binding of APAF-1 and suppressing caspase-9 activation. CARD12 is a Nod-like receptor (NLR) that plays an important role in the innate immune response to Gram-negative bacteria. Caspase-4 (CASP4), -5 (CASP5),
Probab=20.14 E-value=1.2e+02 Score=27.81 Aligned_cols=41 Identities=22% Similarity=0.362 Sum_probs=32.0
Q ss_pred CCHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhh
Q 002323 505 PSAFEIYQKKLLESAQVTQEDINRIQEKVNTILNEEFMASK 545 (936)
Q Consensus 505 ~dpl~~y~~~Li~eGilt~eei~~i~~~~~~~l~~a~~~A~ 545 (936)
++.+.-+-+.|++.++++++|.+.|.++-....++|.....
T Consensus 15 ~~~i~~llD~Ll~~~Vl~~~E~e~i~~~~~t~~dkar~Lid 55 (83)
T cd08325 15 KGVINGLLDDLLEKNVLNEEEMEKIKEENNTIMDKARVLVD 55 (83)
T ss_pred HhhHHHHHHHHHHcCCCCHHHHHHHHhccCCHHHHHHHHHH
Confidence 57788888999999999999999998875445555555443
Done!