Query 002323
Match_columns 936
No_of_seqs 409 out of 2524
Neff 5.3
Searched_HMMs 29240
Date Mon Mar 25 21:42:39 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002323.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/002323hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2jgd_A 2-oxoglutarate dehydrog 100.0 7E-177 2E-181 1607.4 61.0 782 63-894 11-834 (933)
2 2xt6_A 2-oxoglutarate decarbox 100.0 4E-173 1E-177 1599.4 63.4 775 66-899 202-1021(1113)
3 2yic_A 2-oxoglutarate decarbox 100.0 7E-173 2E-177 1564.4 57.9 732 115-899 5-776 (868)
4 2bfd_A 2-oxoisovalerate dehydr 100.0 8.6E-55 3E-59 491.8 24.3 343 203-599 29-397 (400)
5 1qs0_A 2-oxoisovalerate dehydr 100.0 1.8E-54 6.2E-59 489.8 26.0 314 202-561 48-395 (407)
6 2ozl_A PDHE1-A type I, pyruvat 100.0 4.7E-54 1.6E-58 480.5 25.7 294 229-562 29-347 (365)
7 1w85_A Pyruvate dehydrogenase 100.0 6.4E-53 2.2E-57 472.0 24.4 305 203-561 18-350 (368)
8 1umd_A E1-alpha, 2-OXO acid de 100.0 1.8E-49 6E-54 444.0 28.5 314 203-561 11-351 (367)
9 2o1s_A 1-deoxy-D-xylulose-5-ph 100.0 3.8E-33 1.3E-37 331.1 20.9 431 229-891 21-521 (621)
10 3mos_A Transketolase, TK; thia 100.0 9E-29 3.1E-33 293.3 22.7 381 362-900 119-528 (616)
11 2o1x_A 1-deoxy-D-xylulose-5-ph 100.0 1.3E-28 4.3E-33 292.8 19.2 336 362-894 121-526 (629)
12 1gpu_A Transketolase; transfer 100.0 4.5E-28 1.5E-32 290.3 17.7 412 360-893 112-574 (680)
13 2ozl_B PDHE1-B, pyruvate dehyd 99.9 6.8E-28 2.3E-32 267.3 14.8 213 618-893 17-236 (341)
14 2e6k_A Transketolase; structur 99.9 1.3E-26 4.3E-31 276.6 22.4 406 360-899 114-570 (651)
15 2bfd_B 2-oxoisovalerate dehydr 99.9 3.1E-27 1.1E-31 262.0 14.3 216 615-894 18-240 (342)
16 1qs0_B 2-oxoisovalerate dehydr 99.9 5E-27 1.7E-31 259.5 14.8 231 618-899 5-245 (338)
17 1ik6_A Pyruvate dehydrogenase; 99.9 5.7E-27 1.9E-31 262.5 13.7 216 618-895 51-271 (369)
18 3rim_A Transketolase, TK; TPP, 99.9 2.6E-25 8.8E-30 266.2 28.6 409 362-899 131-613 (700)
19 1r9j_A Transketolase; domains, 99.9 3.8E-25 1.3E-29 264.7 28.6 409 362-893 114-566 (673)
20 2r8o_A Transketolase 1, TK 1; 99.9 2.3E-25 8E-30 266.5 25.3 415 361-892 111-568 (669)
21 1umd_B E1-beta, 2-OXO acid deh 99.9 6.3E-26 2.1E-30 249.4 17.1 213 617-894 3-223 (324)
22 3m49_A Transketolase; alpha-be 99.9 8.9E-25 3.1E-29 261.5 25.4 411 362-900 138-606 (690)
23 1itz_A Transketolase; calvin c 99.9 1.1E-23 3.9E-28 252.1 34.4 397 361-892 124-581 (675)
24 3l84_A Transketolase; TKT, str 99.9 1.4E-24 4.9E-29 257.7 23.0 405 361-899 111-554 (632)
25 3kom_A Transketolase; rossmann 99.9 6.1E-24 2.1E-28 253.6 26.2 363 362-827 114-522 (663)
26 1w85_B Pyruvate dehydrogenase 99.9 1.4E-24 4.6E-29 238.9 16.6 204 627-894 12-222 (324)
27 3uk1_A Transketolase; structur 99.9 1.7E-23 6E-28 251.0 24.4 364 363-829 154-568 (711)
28 2qtc_A Pyruvate dehydrogenase 99.8 6.2E-19 2.1E-23 215.8 23.9 417 362-894 190-744 (886)
29 4feg_A Pyruvate oxidase; carba 99.1 4.9E-11 1.7E-15 141.2 6.7 142 366-526 422-597 (603)
30 1yd7_A 2-keto acid:ferredoxin 98.4 1.5E-07 5.1E-12 106.3 5.4 121 681-831 65-192 (395)
31 3ahc_A Phosphoketolase, xylulo 98.0 4.4E-05 1.5E-09 93.2 14.8 126 681-826 491-625 (845)
32 2c42_A Pyruvate-ferredoxin oxi 97.8 2.7E-05 9.3E-10 99.1 9.9 122 676-831 49-177 (1231)
33 2pan_A Glyoxylate carboligase; 97.8 7.7E-06 2.6E-10 97.0 2.9 101 364-482 442-582 (616)
34 1v5e_A Pyruvate oxidase; oxido 97.8 1E-05 3.4E-10 95.6 3.8 99 364-481 413-540 (590)
35 1q6z_A BFD, BFDC, benzoylforma 97.7 7.7E-06 2.6E-10 95.1 2.4 99 364-480 401-525 (528)
36 2uz1_A Benzaldehyde lyase; thi 97.6 1.5E-05 5.2E-10 93.4 1.5 101 364-480 419-546 (563)
37 2iht_A Carboxyethylarginine sy 97.5 2.7E-05 9.4E-10 91.4 2.0 99 364-480 436-561 (573)
38 1t9b_A Acetolactate synthase, 97.4 4.7E-05 1.6E-09 91.6 2.8 98 366-481 515-638 (677)
39 2vk8_A Pyruvate decarboxylase 97.4 2.7E-05 9.3E-10 91.1 0.2 62 364-439 413-478 (563)
40 1ozh_A ALS, acetolactate synth 97.3 4.3E-05 1.5E-09 89.8 0.9 95 365-481 421-544 (566)
41 1ybh_A Acetolactate synthase, 97.3 4.9E-05 1.7E-09 89.6 0.9 100 365-482 427-560 (590)
42 2pgn_A Cyclohexane-1,2-dione h 97.3 3.7E-05 1.3E-09 90.7 -0.2 97 364-482 424-549 (589)
43 3eya_A Pyruvate dehydrogenase 97.2 6.2E-05 2.1E-09 88.0 1.0 99 365-481 407-530 (549)
44 1ovm_A Indole-3-pyruvate decar 97.2 5.3E-05 1.8E-09 88.4 0.1 101 363-480 407-532 (552)
45 2x7j_A 2-succinyl-5-enolpyruvy 97.2 5.6E-05 1.9E-09 89.5 -0.3 96 366-480 457-580 (604)
46 2vbi_A Pyruvate decarboxylase; 97.1 0.00014 4.8E-09 85.2 2.5 98 365-480 410-533 (566)
47 3hww_A 2-succinyl-5-enolpyruvy 97.0 0.0002 6.8E-09 83.9 2.6 95 366-480 419-539 (556)
48 2nxw_A Phenyl-3-pyruvate decar 97.0 0.00015 5.1E-09 85.1 1.2 98 365-480 423-542 (565)
49 2vbf_A Branched-chain alpha-ke 96.9 0.00017 5.7E-09 84.7 1.1 98 364-480 425-551 (570)
50 2c31_A Oxalyl-COA decarboxylas 96.9 0.00034 1.2E-08 82.0 3.4 93 366-481 428-548 (568)
51 2wvg_A PDC, pyruvate decarboxy 96.9 0.00038 1.3E-08 81.6 3.7 58 365-440 414-475 (568)
52 2q28_A Oxalyl-COA decarboxylas 96.9 0.00041 1.4E-08 81.2 3.4 93 366-481 423-545 (564)
53 3lq1_A 2-succinyl-5-enolpyruvy 96.3 0.0011 3.9E-08 77.9 2.4 93 368-480 440-560 (578)
54 2c42_A Pyruvate-ferredoxin oxi 78.9 1.8 6.1E-05 55.6 5.9 36 392-435 954-992 (1231)
55 2zzd_B Thiocyanate hydrolase s 43.0 34 0.0011 34.0 5.8 37 498-540 109-145 (157)
56 2wvg_A PDC, pyruvate decarboxy 27.9 25 0.00086 40.8 2.5 79 392-477 67-167 (568)
57 1t9b_A Acetolactate synthase, 27.7 38 0.0013 40.5 4.1 79 392-477 147-240 (677)
58 1q6z_A BFD, BFDC, benzoylforma 25.6 61 0.0021 37.2 5.2 74 392-477 65-159 (528)
59 3eya_A Pyruvate dehydrogenase 25.1 38 0.0013 39.1 3.4 37 784-822 487-523 (549)
60 2x7j_A 2-succinyl-5-enolpyruvy 23.1 55 0.0019 38.3 4.3 79 392-477 96-196 (604)
61 1ybh_A Acetolactate synthase, 23.0 35 0.0012 39.8 2.6 78 392-476 77-169 (590)
62 2pgn_A Cyclohexane-1,2-dione h 22.8 1.4E+02 0.0048 34.8 7.6 78 392-476 70-162 (589)
63 1bwx_A Parathyroid hormone; pe 21.7 41 0.0014 25.9 1.7 18 208-225 13-30 (39)
64 4feg_A Pyruvate oxidase; carba 20.0 81 0.0028 36.9 4.8 39 784-822 502-540 (603)
No 1
>2jgd_A 2-oxoglutarate dehydrogenase E1 component; flavoprotein, oxidoreductase, thiamine diphosphate, thiamine pyrophosphate, adenosine monophosphate; HET: AMP; 2.6A {Escherichia coli} PDB: 2jgd_B*
Probab=100.00 E-value=6.8e-177 Score=1607.41 Aligned_cols=782 Identities=44% Similarity=0.747 Sum_probs=642.3
Q ss_pred CCCCCCCCCHHHHHHHHHHHhhCCCCCCHHHHHHHhhccC-----CCCCCC----------CC--------ChhhHHHHH
Q 002323 63 TDSFLDGTSSVYLEELQRAWEADPNSVDESWDNFFRNFVG-----QAATSP----------GI--------SGQTIQESM 119 (936)
Q Consensus 63 ~~s~l~g~Na~YIEelY~~y~~DP~SVd~sWr~~F~~l~~-----~~~~~~----------~~--------~~~~~~~~~ 119 (936)
+++||+|.|+.|||+||++|++||+||+++|+.||+++.. .....+ .. ......+++
T Consensus 11 ~~~~~~~~~~~~~~~~y~~~~~~p~sv~~~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (933)
T 2jgd_A 11 DSSYLSGANQSWIEQLYEDFLTDPDSVDANWRSTFQQLPGTGVKPDQFHSQTREYFRRLAKDASRYSSTISDPDTNVKQV 90 (933)
T ss_dssp -------------------------------------------------------------------------CHHHHHH
T ss_pred hhcccccccHHHHHHHHHHHhhCccccCHHHHHHHhcccccCCcccccccchhhhhhhccccccccccccCcchhHHHHH
Confidence 4589999999999999999999999999999999998731 100000 00 112345788
Q ss_pred HHHHHHHHHhhcCccccccCCCCCCCCCCCCCCCccccCCCcccccceeecCcccccccccCCCCCcCHHHHHHHHHHHh
Q 002323 120 RLLLLVRAYQVNGHMKAKLDPLGLEEREIPEDLDPALYGFTEADLDREFFIGVWRMAGFLSENRPVQTLRSILTRLEQAY 199 (936)
Q Consensus 120 ~v~~lI~ayr~~GH~~A~lDPL~~~~~~~~~~L~~~~~gl~~~dl~~~~~~~~~~~~~~~~~~~~~~tl~ei~~~L~~~Y 199 (936)
+|++||+|||.+||+.|+||||++..+..+++|++.+|||+++|||++|.+|. +.. +.+.+||+||+++|+++|
T Consensus 91 ~~~~li~~yr~~gh~~a~~dpl~~~~~~~~~~l~~~~~g~~~~d~~~~~~~~~-----~~~-~~~~~~l~~~~~~l~~~y 164 (933)
T 2jgd_A 91 KVLQLINAYRFRGHQHANLDPLGLWQQDKVADLDPSFHDLTEADFQETFNVGS-----FAS-GKETMKLGELLEALKQTY 164 (933)
T ss_dssp HHHHHHHHHHHHGGGGSCCCSSSCCCCC---CCSSGGGGCCC-CTTSEEECTT-----CC----CEEEHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCccccccCCCCCCCCCCCCCCCHhHcCCchhhccceeccCc-----ccc-CcCcCcHHHHHHHHHHhc
Confidence 99999999999999999999999865667889999999999999999999872 221 456799999999999999
Q ss_pred cCCccccccccCCHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccCCcchhhhhHHHHH
Q 002323 200 CGSIGYEYMHIADRDQCNWLRDKIETPTPMQYNRQRREVILDRLIWSTQFENFLATKWTTAKRFGLEGGETLIPGMKEMF 279 (936)
Q Consensus 200 Cg~ig~E~~hi~~~e~r~Wl~~~iE~~~~~~ls~e~~~~il~~M~~ar~fE~fl~~k~~~~KrfgleG~Eali~gl~~li 279 (936)
||+||+|||||.|+++|+||+++||+. .+.+++|+++++|++|+++|.||+|+.++|+++||||++|+|+++||+.+++
T Consensus 165 c~~ig~e~~~i~~~~~~~w~~~~~e~~-~~~~s~e~~~~~y~~m~~~r~fE~~l~~~~~~gkrf~~~G~Ea~i~g~~~~~ 243 (933)
T 2jgd_A 165 CGPIGAEYMHITSTEEKRWIQQRIESG-RATFNSEEKKRFLSELTAAEGLERYLGAKFPGAKRFSLEGGDALIPMLKEMI 243 (933)
T ss_dssp HSSEEEECSSCCCHHHHHHHHHHHCC--CCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCC--CCCCTTCTTHHHHHHHHH
T ss_pred cCCCcceeeecCCHHHhHHHHHHhhcc-CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccCCCchHHHHHHHHHH
Confidence 999999999999999999999999976 5689999999999999999999999999999999999999999999999999
Q ss_pred HHHhhCCCCcEEecCCCCchHHHHHhhcCCCHHHHHHhhcCCCCCCCCCCCccCCCCcccccccccCCCCCCCceeeeee
Q 002323 280 DRAADLGVESIVIGMPHRGRLNVLGNVVRKPLRQIFSEFSGGTKPVDEDGLYTGTGDVKYHLGTSYDRPTRGGKRIHLSL 359 (936)
Q Consensus 280 ~~A~~~Gv~DivigM~HRgrlnvLa~vlg~p~~~ifaEf~G~~~~~~~G~~~ggsGDVkyHlG~s~~~~~~~g~~I~lsl 359 (936)
++|+++|++|+|+||+||||+|+|+|++|+|+.+||+||+|+.++.+ |+||||||+|++....+. |..+||++
T Consensus 244 ~~a~~~g~~D~v~g~~hRg~~~~Lan~~G~~~~~i~~e~~G~~~g~~------g~gdv~~Hlg~~~~~~~~-gg~~~l~l 316 (933)
T 2jgd_A 244 RHAGNSGTREVVLGMAHRGRLNVLVNVLGKKPQDLFDEFAGKHKEHL------GTGDVKYHMGFSSDFQTD-GGLVHLAL 316 (933)
T ss_dssp HHHHTTTCCEEEEECCSTTHHHHHHHTTCCCHHHHHHHHHTCC--CC------SCCCCGGGCCEEEEEEET-TEEEEEEE
T ss_pred HHHhhCCCCCEEecCCCcCHHHHHHHHhCCCHHHHHHHhcCCCCCCC------CCCCccccCCcccccccC-CCceEEee
Confidence 99999999999999999999999999999999999999999986653 468999999988765444 55799999
Q ss_pred ccccCCCccccceeechhHHHHHhcCCCCCCceEEEEEecCcccCCCchHHHhhhccCCCCCccccEEEEEEeCCccccc
Q 002323 360 VANPSHLEAVDPVVVGKTRAKQYYSHDVDRTKNMGVLIHGDGSFAGQGVVYETLHLSALPNYTTGGTIHIVVNNQVAFTT 439 (936)
Q Consensus 360 ~~NPSHLeav~PVa~G~ArA~q~~~~d~~~~~~v~v~~hGDgA~sGQGvv~EtLNlA~LP~Y~~GGtIhIV~NNQigfTT 439 (936)
++||||||+++|+|+|+|+|+|+++.+.++.+.++||+|||||+++||+|||+||+|.+.+|.|||+||||+||||||||
T Consensus 317 ~~~~shlg~~~p~A~G~A~A~~~~~~~~~~~~~~vv~v~GDGa~a~qG~~~Ealn~A~~~~lp~gg~I~vv~nN~~~ist 396 (933)
T 2jgd_A 317 AFNPSHLEIVSPVVIGSVRARLDRLDEPSSNKVLPITIHGDAAVTGQGVVQETLNMSKARGYEVGGTVRIVINNQVGFTT 396 (933)
T ss_dssp CCCCSSTTCHHHHHHHHHHHHHTTSSSCCGGGEEEEEEEEHHHHHHCTHHHHHHHHTTSTTTCCSCCEEEEEECC-----
T ss_pred cccCcccccccCHHHHHHHHHHhhccccCCCCeEEEEEECCcccccCCHHHHHHHHhhccCCCCCceEEEEEeCCccccC
Confidence 99999999999999999999999865444567999999999999559999999999999999999999999999999999
Q ss_pred -CCCCCCCcchhhH------------------HHHHHHHHHHHHHHccCCCEEEEEEeeecCCCCCCCCCCCCCHHHHHH
Q 002323 440 -DPRAGRSSQYCTD------------------AVVHVCELAAEWRQKFHSDVVVDLVCYRRFGHNEIDEPSFTQPKMYQV 500 (936)
Q Consensus 440 -~~~~~rss~y~tD------------------AV~~a~~~A~e~rr~f~~pvlIdlv~YRr~GHne~Ddp~ytqp~~y~~ 500 (936)
++.+++++.|++| ||++|++.|++++|++++|+|||++|||++|||++|+|+||+|+||+.
T Consensus 397 ~~~~~~~~~~~~~~~a~a~g~p~~~VdG~D~~av~~a~~~A~e~~r~~~~P~lIe~~tyR~~GH~~~D~~~yr~~~e~~~ 476 (933)
T 2jgd_A 397 SNPLDARSTPYCTDIGKMVQAPIFHVNADDPEAVAFVTRLALDFRNTFKRDVFIDLVCYRRHGHNEADEPSATQPLMYQK 476 (933)
T ss_dssp ----------CGGGGGGTTTCCEEEEETTCHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCC-----------CCTTHHH
T ss_pred CCHHhcccchhHHHHHHHcCCCEEEECCCCHHHHHHHHHHHHHHHHhcCCCEEEEEeeeeecCcCcccchhhCCHHHHHH
Confidence 9998888888875 899999999999999999999999999999999999999999999999
Q ss_pred HHcCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhhhcCCCccchhhhhccCCCCcccccccCCCCCChHH
Q 002323 501 IRSHPSAFEIYQKKLLESAQVTQEDINRIQEKVNTILNEEFMASKDYVPKRRDWLSAYWAGFKSPEQVSRIRNTGVKPEI 580 (936)
Q Consensus 501 i~~~~dpl~~y~~~Li~eGilt~eei~~i~~~~~~~l~~a~~~A~~~~p~~~~~~~~~w~~~~~~~~~~~~~~Tgv~~~~ 580 (936)
|++++||+.+|+++|+++|++|++++++++++++++|+++++.|++..|.+.++ ..|.++... .....++||++.+.
T Consensus 477 ~~~~~dPi~~~~~~Li~~Gv~t~~~~~~i~~~~~~~v~~a~~~A~~~~p~~~~~--~~~~~~~~~-~~~~~~~tg~~~~~ 553 (933)
T 2jgd_A 477 IKKHPTPRKIYADKLEQEKVATLEDATEMVNLYRDALDAGDCVVAEWRPMNMHS--FTWSPYLNH-EWDEEYPNKVEMKR 553 (933)
T ss_dssp HHTSCCHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHTSCCCTTEECCCGGG--CTTGGGSSC-CTTCCCCCCCCHHH
T ss_pred HHccCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcch--hhccccccc-ccccCCCCCCCHHH
Confidence 998899999999999999999999999999999999999999998754443332 457654321 11224679999999
Q ss_pred HHHHHHHhccCCCCCCchhHHHHHHHHHHHHHhcCCcccHHHHHHHHhhhhhhcCCcEEEecccCCCcccccccceeeec
Q 002323 581 LKNVGKAITNLPENFKPHRGVKKVYEQRAQMIETGEGIDWAVGEALAFATLLVEGNHVRLSGQDVERGTFSHRHSVLHDQ 660 (936)
Q Consensus 581 l~~i~~~~~~~P~~f~~h~~l~r~l~~R~~~~~~~~~iDWa~aE~LAfgsLl~eg~~Vrl~GqDv~rGtF~~RHavl~dq 660 (936)
|+.++++++++|++|++|++|+|++++|.+|+++++.+||+++|++||++|+.+|.+||++||||+||||+|||||||||
T Consensus 554 l~~i~~~~~~~p~~~~~~~~v~~~~~~R~~~~~~~~~~dw~~~e~~al~~l~~~~~~V~~~g~Dv~~gTfs~rh~v~~d~ 633 (933)
T 2jgd_A 554 LQELAKRISTVPEAVEMQSRVAKIYGDRQAMAAGEKLFDWGGAENLAYATLVDEGIPVRLSGEDSGRGTFFHRHAVIHNQ 633 (933)
T ss_dssp HHHHHHHTTCCCTTSCCCHHHHHHHHHHHHHHTTSSCBCHHHHHHHHHHHHHTTTCCEEEEETTTTTCTTSCCCCSEECS
T ss_pred HHHHHhhhcCCCCCCcccHHHHHHHHHHHHhhhccCCCCHHHHHHHHHHHHHhcCCCEEEECCccCCcchhhhhhhcccc
Confidence 99999999999999999999999999999999999899999999999999999999999999999999999999999999
Q ss_pred CCCceeecCCCCcccCCCcceEEEccCcchhHHHHHHhhhccCCCCcceeeeccchhhhhhHHHHHHHHHhhhhhhhcCc
Q 002323 661 ETGEKYCPLDHVMMNQDEEMFTVSNSSLSEFGVLGFELGYSMENPNSLVLWEAQFGDFANGAQVIFDQFLSSGESKWLRQ 740 (936)
Q Consensus 661 ~t~~~y~pL~~l~~~~~~g~~rV~nspLSE~avlG~e~G~sl~g~~~LviwEaqFgDF~n~Aq~iidqfi~~~~~kw~~~ 740 (936)
+||..|+||++|. ++||++||+||||||++++||++|||+.|+++|+|||+|||||+|+||+++|||++++++||+++
T Consensus 634 ~~g~~~~~l~~l~--~~~gp~rv~ds~IaE~~~vg~a~G~A~~G~~~lpv~e~qf~dF~~~AQra~DQii~~~~ak~~~~ 711 (933)
T 2jgd_A 634 SNGSTYTPLQHIH--NGQGAFRVWDSVLSEEAVLAFEYGYATAEPRTLTIWEAQFGDFANGAQVVIDQFISSGEQKWGRM 711 (933)
T ss_dssp SSSCEECGGGCSC--TTCCCEEEECCCSCHHHHHHHHHHHHHHCTTSEEEEEC-CGGGGGGGHHHHHHTTTTHHHHHCCC
T ss_pred cCCceeechHHHH--HHcCCCeEEECCcCHHHHHHHHHHHHhcCCCCCCEEEEEEhhhhcccHHHHHHHHHHHHHHHccC
Confidence 9999999999999 89999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccEEEcCccCCCCCccccCchhhhhhhcCCCCCCcccCCCchhhhhccccceEEEEcCCHHHHHHHHHHHHhcCCCCcE
Q 002323 741 TGLVVLLPHGYDGQGPEHSSARLERFLQMSDDNPFVIPEMDPTLRKQIQECNWQIVNVTTPANYFHVLRRQIHRGFRKPL 820 (936)
Q Consensus 741 s~lv~~lPhG~~G~GpeHSs~RiERfLQl~~~~~~~~~~~pg~~~~~~~~~N~~Vv~pstpa~~fhlLrrq~~r~~~~Pl 820 (936)
+||||++||||+|+||+|||+|+|||||||+. | ||+|++||||+|||||||+|+.+++++||
T Consensus 712 ~~vv~~l~~G~~g~G~~Hss~~~E~~l~~~~~--------p----------nm~V~~Pst~~e~~~lLr~a~~~~~~~Pv 773 (933)
T 2jgd_A 712 CGLVMLLPHGYEGQGPEHSSARLERYLQLCAE--------Q----------NMQVCVPSTPAQVYHMLRRQALRGMRRPL 773 (933)
T ss_dssp CCCEEEEECCCSSSCTTSSCCCHHHHHHTCCT--------T----------CCEEECCCSHHHHHHHHHHHHHSSCCCCE
T ss_pred CCEEEEEeCCCCCCCcccccchHHHHHHHhCC--------C----------CeEEEecCCHHHHHHHHHHHHHhcCCCcE
Confidence 99999999999999999999999999999986 2 79999999999999999999877779999
Q ss_pred EEEccccccCCCCCCCCcccccccCCCCCCCCCCCceeEeecCCCCCCCCCCCccEEEEeCchhHHHHHHhhcc
Q 002323 821 IVISPKNLLRHKDCKSNLSEFDDVQGHPGFDKQGTRFKRLIKDQNGHSDLEEGIRRLVLCSGKVFITSLMKGGR 894 (936)
Q Consensus 821 i~~~pK~Llr~~~~~S~l~ef~~~~~~~~~~~pg~~F~~vi~d~~~~~~~~~~v~rvilcsGkvyydL~~~r~~ 894 (936)
||++||+|||++.++|+++||.+ +.|+.+|++... ...++|+|||+|+|++||+|.++|++
T Consensus 774 ii~~pk~l~r~~~~~~~~~~~~~-----------~~f~~~ig~~~~--~~g~dV~~vI~~~G~v~~~l~aa~~~ 834 (933)
T 2jgd_A 774 VVMSPKSLLRHPLAVSSLEELAN-----------GTFLPAIGEIDE--LDPKGVKRVVMCSGKVYYDLLEQRRK 834 (933)
T ss_dssp EEEECSGGGGCTTCCBCHHHHHH-----------CCCCSEECCCSC--CCGGGCCEEEEECTTHHHHHHHHHHH
T ss_pred EEEecchhccCCCCcCCccccCC-----------CceeecCCcceE--eecCcceEEEEEchHHHHHHHHHHHH
Confidence 99999999999999998999976 779999988753 23678999999999999999998754
No 2
>2xt6_A 2-oxoglutarate decarboxylase; lyase, KDH, KGD; HET: TPP; 2.74A {Mycobacterium smegmatis}
Probab=100.00 E-value=3.9e-173 Score=1599.40 Aligned_cols=775 Identities=43% Similarity=0.718 Sum_probs=687.1
Q ss_pred CCCCCCH-HHHHHHHHHHhhCCCCCCHHHHHHHhhccCCCCCCC----CCChhhHHHHHHHHHHHHHHhhcCccccccCC
Q 002323 66 FLDGTSS-VYLEELQRAWEADPNSVDESWDNFFRNFVGQAATSP----GISGQTIQESMRLLLLVRAYQVNGHMKAKLDP 140 (936)
Q Consensus 66 ~l~g~Na-~YIEelY~~y~~DP~SVd~sWr~~F~~l~~~~~~~~----~~~~~~~~~~~~v~~lI~ayr~~GH~~A~lDP 140 (936)
.+.|..+ .|+. ..+++++||. +|+.||+++..+. .++ ......+.++++|++||+|||.+||+.|+|||
T Consensus 202 viDGa~aa~FL~-~lk~~Le~p~----~w~~~f~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~li~~yr~~gh~~a~~dp 275 (1113)
T 2xt6_A 202 IIQGAESGDFLR-TIHQLLLDDD----FFDEIFRELGIPY-EPVRWRTDNPDSIEDKNARVIELIAAYRNRGHLMADIDP 275 (1113)
T ss_dssp TCCHHHHHHHHH-HHHHHTTCHH----HHHHHHHHHTCCS-CCCCCCCCCCSCHHHHHHHHHHHHHHHHHHGGGSCCCCT
T ss_pred eechHHHHHHHH-HHHHHHhCcH----HHHHHHHhccCCC-CcccccccCcchhHHHHHHHHHHHHHHHHhCccccccCC
Confidence 3455544 4454 4678999976 8999999984210 000 00133567899999999999999999999999
Q ss_pred CCCCCC---CCCCCCCccccCCCcccccceeecCcccccccccCCCCCcCHHHHHHHHHHHhcCCccccccccCCHHHHH
Q 002323 141 LGLEER---EIPEDLDPALYGFTEADLDREFFIGVWRMAGFLSENRPVQTLRSILTRLEQAYCGSIGYEYMHIADRDQCN 217 (936)
Q Consensus 141 L~~~~~---~~~~~L~~~~~gl~~~dl~~~~~~~~~~~~~~~~~~~~~~tl~ei~~~L~~~YCg~ig~E~~hi~~~e~r~ 217 (936)
|++ .+ ..+++|++.+|||+++|||++|.+| +++ +.+.+||+||+++|+++|||+||+|||||.|+++|+
T Consensus 276 l~~-~~~~~~~~~~l~~~~~g~~~~d~~~~~~~~-----~~~--~~~~~~l~~~~~~l~~~yc~~ig~e~~~i~~~~~~~ 347 (1113)
T 2xt6_A 276 LRL-DNTRFRSHPDLDVNSHGLTLWDLDREFKVD-----GFA--GVQRKKLRDILSVLRDAYCRHVGVEYTHILEPEQQR 347 (1113)
T ss_dssp TCC-CGGGGSCCTTTCSGGGTCCGGGTTSEEEEC-----STT--SSEEEEHHHHHHHHHHHHSSSEEEECTTCSCHHHHH
T ss_pred CCC-CcCCCCCCCCcCHHHcCCChHHhcCccccC-----ccc--CcccCCHHHHHHHHHHhccCCCCcceeccCCHHHhH
Confidence 998 44 5678999999999999999999987 233 456799999999999999999999999999999999
Q ss_pred HHHHHhCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccCCcchhhhhHHHHHHHHhhCCCCcEEecCCCC
Q 002323 218 WLRDKIETPTPMQYNRQRREVILDRLIWSTQFENFLATKWTTAKRFGLEGGETLIPGMKEMFDRAADLGVESIVIGMPHR 297 (936)
Q Consensus 218 Wl~~~iE~~~~~~ls~e~~~~il~~M~~ar~fE~fl~~k~~~~KrfgleG~Eali~gl~~li~~A~~~Gv~DivigM~HR 297 (936)
|+++++|... +.+++|+++++|++|+++|.||+|+.++|+++||||++|+|++++|++++++.|+++|++|+|+||+||
T Consensus 348 w~~~~~e~~~-~~~s~e~~~~~y~~m~~~r~fE~~l~~~~~~~k~~g~~GqEa~~~g~~~~l~~~~~l~~~D~v~gm~hR 426 (1113)
T 2xt6_A 348 WIQERVETKH-DKPTVAEQKYILSKLNAAEAFETFLQTKYVGQKRFSLEGAETVIPMMDAVIDQCAEHGLDEVVIAMPHR 426 (1113)
T ss_dssp HHHHHHHSCC-CCCCHHHHHHHHHHHHHHHHHHHHHHHHCSSCGGGCCTTCTTHHHHHHHHHHHHHHTTCSEEEEECCST
T ss_pred HHHHHhhcCC-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccCCChHHHHHHHHHHHHHhhhCCCCCEEEecccc
Confidence 9999999876 789999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chHHHHHhhcCCCHHHHHHhhcCCCCCC-CCCCCccCCCCcccccccccCCCCC-CCceeeeeeccccCCCccccceeec
Q 002323 298 GRLNVLGNVVRKPLRQIFSEFSGGTKPV-DEDGLYTGTGDVKYHLGTSYDRPTR-GGKRIHLSLVANPSHLEAVDPVVVG 375 (936)
Q Consensus 298 grlnvLa~vlg~p~~~ifaEf~G~~~~~-~~G~~~ggsGDVkyHlG~s~~~~~~-~g~~I~lsl~~NPSHLeav~PVa~G 375 (936)
||+|+|+|++|+|+.+||+||+|+.+++ +. |+|||+||+|++....+. +++.+++++++||||||+++|+|+|
T Consensus 427 g~~~~La~~~G~~~~~i~ae~~G~~~g~~~~-----g~gdv~~Hlg~~~~~~~~~g~~~v~l~l~~n~s~Lg~~~p~A~G 501 (1113)
T 2xt6_A 427 GRLNVLANIVGKPYSQIFSEFEGNLNPSQAH-----GSGDVKYHLGATGTYIQMFGDNDIEVSLTANPSHLEAVDPVLEG 501 (1113)
T ss_dssp THHHHHHHTTCCCHHHHSTTC------------------CGGGTCCEEEEEECSSSSCEEEEEECCCCSSTTTTHHHHHH
T ss_pred chHHHHHHHhCCCHHHHHHHhcCCCCCCccC-----CCCCccccCCccccccccCCCcceeeeecCCCccccccccHHHH
Confidence 9999999999999999999999998876 43 468999999988766555 4448999999999999999999999
Q ss_pred hhHHHHHhcCCCCC-----CceEEEEEecCcccCCCchHHHhhhccCCCCCccccEEEEEEeCCcccccCCCCCCCcchh
Q 002323 376 KTRAKQYYSHDVDR-----TKNMGVLIHGDGSFAGQGVVYETLHLSALPNYTTGGTIHIVVNNQVAFTTDPRAGRSSQYC 450 (936)
Q Consensus 376 ~ArA~q~~~~d~~~-----~~~v~v~~hGDgA~sGQGvv~EtLNlA~LP~Y~~GGtIhIV~NNQigfTT~~~~~rss~y~ 450 (936)
+|+|.|+++.+.++ .+.+++|+||||||++||+||||||||.+.+|.|||+||||+||||||||++++++++.|+
T Consensus 502 ~A~A~k~~~~~~~~~~~~~~~~~~v~~~GDGa~~~eG~~~Ealn~A~~~~lp~g~vi~iv~NN~~gist~~~~~~s~~~~ 581 (1113)
T 2xt6_A 502 LVRAKQDLLDTGEEGSDNRFSVVPLMLHGDAAFAGQGVVAETLNLALLRGYRTGGTIHIVVNNQIGFTTAPTDSRSSEYC 581 (1113)
T ss_dssp HHHHHHHHTTBSTTSSBSCCCEEEEEEEEHHHHHHCTHHHHHHTTTTCTTTCCSCCEEEEEECSCBTTBCHHHHCSSSST
T ss_pred HHHHHHHhccccCccccccCCcEEEEEECCcccccccHHHHHHHHHhhcCCCCCCeEEEEEeCCcccccCccccccccCH
Confidence 99999998743222 5699999999999866999999999999999999999999999999999998878888888
Q ss_pred hH------------------HHHHHHHHHHHHHHccCCCEEEEEEeeecCCCCCCCCCCCCCHHHHHHHHcCCCHHHHHH
Q 002323 451 TD------------------AVVHVCELAAEWRQKFHSDVVVDLVCYRRFGHNEIDEPSFTQPKMYQVIRSHPSAFEIYQ 512 (936)
Q Consensus 451 tD------------------AV~~a~~~A~e~rr~f~~pvlIdlv~YRr~GHne~Ddp~ytqp~~y~~i~~~~dpl~~y~ 512 (936)
+| ||++|++.|++|||+++||+|||++|||++|||++|+|+||+|.||+.|++++||+.+|+
T Consensus 582 ~~~a~a~G~p~~~VdG~D~~av~~a~~~A~~~~r~~~~PvlIe~~tyR~~GHs~~D~p~~~~~~~~~~~~~~~dpi~~~~ 661 (1113)
T 2xt6_A 582 TDVAKMIGAPIFHVNGDDPEACAWVARLAVDFRQAFKKDVVIDMLCYRRRGHNEGDDPSMTQPYMYDVIDTKRGSRKAYT 661 (1113)
T ss_dssp TGGGGGGTCCEEEEETTCHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCSCSSTTCCGGGTCHHHHHHHTTCCCHHHHHH
T ss_pred HHHHHhcCCcEEEEcCCCHHHHHHHHHHHHHHHHhcCCCEEEEEEeEccCCcCCCCccccCChHHHHHHHhcCCHHHHHH
Confidence 75 999999999999999999999999999999999999999999999999998999999999
Q ss_pred HHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhhhcCC-Cccch--hhhhccCCCCcccccccCCCCCChHHHHHHHHHhc
Q 002323 513 KKLLESAQVTQEDINRIQEKVNTILNEEFMASKDYVP-KRRDW--LSAYWAGFKSPEQVSRIRNTGVKPEILKNVGKAIT 589 (936)
Q Consensus 513 ~~Li~eGilt~eei~~i~~~~~~~l~~a~~~A~~~~p-~~~~~--~~~~w~~~~~~~~~~~~~~Tgv~~~~l~~i~~~~~ 589 (936)
++|+++|++|++++++++++++++|++++++|++..| .+.+| +...|.+ ....+|+++.+.|+.++++++
T Consensus 662 ~~L~~~G~~t~ee~~~i~~e~~~~v~~a~~~a~~~~~~~~~~~~~~~~~~~~-------~~~~~t~~~~~~l~~~~~~~~ 734 (1113)
T 2xt6_A 662 EALIGRGDISMKEAEDALRDYQGQLERVFNEVRELEKHEIEPSESVEADQQI-------PSKLATAVDKAMLQRIGDAHL 734 (1113)
T ss_dssp HHHHHHTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-----------------------CCCCCCHHHHHHHHHHTT
T ss_pred HHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccccccccccccc-------ccCCCCccCHHHHHHHHHhhc
Confidence 9999999999999999999999999999999987544 33233 2233422 124579999999999999999
Q ss_pred cCCCCCCchhHHHHHHHHHHHHHhcCCcccHHHHHHHHhhhhhhcCCcEEEecccCCCcccccccceeeecCCCceeecC
Q 002323 590 NLPENFKPHRGVKKVYEQRAQMIETGEGIDWAVGEALAFATLLVEGNHVRLSGQDVERGTFSHRHSVLHDQETGEKYCPL 669 (936)
Q Consensus 590 ~~P~~f~~h~~l~r~l~~R~~~~~~~~~iDWa~aE~LAfgsLl~eg~~Vrl~GqDv~rGtF~~RHavl~dq~t~~~y~pL 669 (936)
++|++|++|+++++++++|.+|++. +.||||++|+|||||||.+|++|||+||||+||||+|||||||||++|..|.||
T Consensus 735 ~~p~~~~~~~~v~~~~~~r~~m~~~-~~i~~a~~e~la~~~ll~~~~~V~l~GeDv~rgtfs~rh~v~~d~~~g~~~~~l 813 (1113)
T 2xt6_A 735 ALPEGFTVHPRVRPVLEKRREMAYE-GRIDWAFAELLALGSLIAEGKLVRLSGQDTQRGTFTQRHAVIVDRKTGEEFTPL 813 (1113)
T ss_dssp CCCTTCCCCTTTHHHHHHHHHHHHH-CCBCHHHHHHHHHHHHHHTTCEEEEEETTTTTCTTSCCCSSEECTTTCCEECGG
T ss_pred cCCcccccchhHHHHHHHHHHHhhh-hhhhHHHHHHHHHHHHHhcCCCEEEEcccCCCccchhcchheecccCCceecch
Confidence 9999999999999999999999887 779999999999999999999999999999999999999999999999999999
Q ss_pred CCC------cccCCCcceEEEccCcchhHHHHHHhhhccCCCCcceeeeccchhhhhhHHHHHHHHHhhhhhhhcCcccc
Q 002323 670 DHV------MMNQDEEMFTVSNSSLSEFGVLGFELGYSMENPNSLVLWEAQFGDFANGAQVIFDQFLSSGESKWLRQTGL 743 (936)
Q Consensus 670 ~~l------~~~~~~g~~rV~nspLSE~avlG~e~G~sl~g~~~LviwEaqFgDF~n~Aq~iidqfi~~~~~kw~~~s~l 743 (936)
++| . +++|++||+||||||++++|||+|||+.|+++++|||+|||||+|+||++|||||+++++||++++||
T Consensus 814 ~~l~~~~~~~--~~~~p~rv~ds~IsE~~~vg~a~G~A~~G~~~~~i~Eaqf~dF~~~aQ~~~DQ~i~~~~~k~~~~~~v 891 (1113)
T 2xt6_A 814 QLLATNPDGT--PTGGKFLVYNSALSEFAAVGFEYGYSVGNPDAMVLWEAQFGDFVNGAQSIIDEFISSGEAKWGQLSDV 891 (1113)
T ss_dssp GGGGBCTTSC--BCSCEEEEEECCSCSHHHHHHHHHHHHHCTTSEEEEECSSGGGGGGGHHHHHHTTTTHHHHHCCCCCC
T ss_pred hccccccccc--hhcCCcEEEECCCCHHHHHHHHHHHHhcCCCCceEEEEEEHHHHhhhHHHHHHHHHHHHHHhCCCCCE
Confidence 999 7 77999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEcCccCCCCCccccCchhhhhhhcCCCCCCcccCCCchhhhhccccceEEEEcCCHHHHHHHHHHHHhcCCCCcEEEE
Q 002323 744 VVLLPHGYDGQGPEHSSARLERFLQMSDDNPFVIPEMDPTLRKQIQECNWQIVNVTTPANYFHVLRRQIHRGFRKPLIVI 823 (936)
Q Consensus 744 v~~lPhG~~G~GpeHSs~RiERfLQl~~~~~~~~~~~pg~~~~~~~~~N~~Vv~pstpa~~fhlLrrq~~r~~~~Pli~~ 823 (936)
||++||||+|+||+|||+|+|||||||.. | ||+||+||||+|||||||+|+++++++|||||
T Consensus 892 v~~lp~G~~G~G~~Hs~~~~E~~l~l~~~--------p----------nm~V~~Ps~~~~~~~lLr~a~~~~~~~Pvii~ 953 (1113)
T 2xt6_A 892 VLLLPHGHEGQGPDHTSGRIERFLQLWAE--------G----------SMTIAMPSTPANYFHLLRRHGKDGIQRPLIVF 953 (1113)
T ss_dssp EEEEECCCSSSCTTSSCCCHHHHHHHCCT--------T----------SCEEECCSSHHHHHHHHHHHHHSSCCCCEEEE
T ss_pred EEEeCCCCCCCChhhhcccHHHHHhcCCC--------C----------CcEEEecCCHHHHHHHHHHHHhccCCCCEEEE
Confidence 99999999999999999999999999986 3 69999999999999999999998889999999
Q ss_pred ccccccCCCCCCCCcccccccCCCCCCCCCCCceeEeecCCCC--CCCCCCCccEEEEeCchhHHHHHHhhcccC-Cce
Q 002323 824 SPKNLLRHKDCKSNLSEFDDVQGHPGFDKQGTRFKRLIKDQNG--HSDLEEGIRRLVLCSGKVFITSLMKGGRSA-VQV 899 (936)
Q Consensus 824 ~pK~Llr~~~~~S~l~ef~~~~~~~~~~~pg~~F~~vi~d~~~--~~~~~~~v~rvilcsGkvyydL~~~r~~~~-~~~ 899 (936)
+||+|||++.++|+++||.+ +.|+++|++... .+.+.++|||+|+|+||+||+|.++|++++ .+|
T Consensus 954 ~pk~L~R~~~~~~~~~~~~~-----------~~f~~~ig~~~~~~~l~~g~dv~r~iv~~G~~~~~l~aa~~~~g~i~v 1021 (1113)
T 2xt6_A 954 TPKSMLRNKAAVSDIRDFTE-----------SKFRSVLEEPMYTDGEGDRNKVTRLLLTSGKIYYELAARKAKENREDV 1021 (1113)
T ss_dssp ECSGGGSCSSSCBCHHHHHS-----------CCCCSEECCHHHHTSCCCSTTCCEEEEECSTHHHHHHHHHHHHTCTTE
T ss_pred echHHhCCCCCCCcccccCC-----------CCccccCCcceeeccccCccccCEEEEEECHHHHHHHHHHHhCCCCCE
Confidence 99999999999999999975 679999987531 024578899999999999999999987776 544
No 3
>2yic_A 2-oxoglutarate decarboxylase; lyase; HET: TPP; 1.96A {Mycobacterium smegmatis} PDB: 2xta_A* 2y0p_A* 2xt9_A* 2yid_A*
Probab=100.00 E-value=7e-173 Score=1564.40 Aligned_cols=732 Identities=44% Similarity=0.748 Sum_probs=646.1
Q ss_pred HHHHHHHHHHHHHHhhcCccccccCCCCCCCC---CCCCCCCccccCCCcccccceeecCcccccccccCCCCCcCHHHH
Q 002323 115 IQESMRLLLLVRAYQVNGHMKAKLDPLGLEER---EIPEDLDPALYGFTEADLDREFFIGVWRMAGFLSENRPVQTLRSI 191 (936)
Q Consensus 115 ~~~~~~v~~lI~ayr~~GH~~A~lDPL~~~~~---~~~~~L~~~~~gl~~~dl~~~~~~~~~~~~~~~~~~~~~~tl~ei 191 (936)
+.++++|++||+|||.+||+.|+||||++ .+ ..+++|++.+||||++|||++|.+| +++ +.+.+||+||
T Consensus 5 ~~~~~~~~~li~~yr~~gh~~a~~dpl~~-~~~~~~~~~~l~~~~~g~~~~d~~~~~~~~-----~~~--~~~~~~l~~~ 76 (868)
T 2yic_A 5 EDKNARVIELIAAYRNRGHLMADIDPLRL-DNTRFRSHPDLDVNSHGLTLWDLDREFKVD-----GFA--GVQRKKLRDI 76 (868)
T ss_dssp --CHHHHHHHHHHHHHHGGGTSCCCTTCC-CTHHHHC-----------CCSTTSSBC---------------CCCBHHHH
T ss_pred HHHHHHHHHHHHHHHHhCccceecCCCCC-CCCCCCCCCccCHHhcCCChHHhCCeeccC-----Ccc--CcCcCCHHHH
Confidence 45789999999999999999999999998 44 5678999999999999999999987 233 4678999999
Q ss_pred HHHHHHHhcCCccccccccCCHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccCCcchh
Q 002323 192 LTRLEQAYCGSIGYEYMHIADRDQCNWLRDKIETPTPMQYNRQRREVILDRLIWSTQFENFLATKWTTAKRFGLEGGETL 271 (936)
Q Consensus 192 ~~~L~~~YCg~ig~E~~hi~~~e~r~Wl~~~iE~~~~~~ls~e~~~~il~~M~~ar~fE~fl~~k~~~~KrfgleG~Eal 271 (936)
+++|+++|||+||+|||||.|+++|+|++++||... +.+++|+++++|++|+++|.||+|+.++|+++||||++|+|++
T Consensus 77 ~~~l~~~yc~~ig~e~~~i~~~~~~~w~~~~~e~~~-~~~s~e~~~~~y~~m~~~R~fE~~l~~~~~~~k~~g~~G~Ea~ 155 (868)
T 2yic_A 77 LSVLRDAYCRHVGVEYTHILEPEQQRWIQERVETKH-DKPTVAEQKYILSKLNAAEAFETFLQTKYVGQKRFSLEGAETV 155 (868)
T ss_dssp HHHHHHHHSSSEEEECTTCSCHHHHHHHHHHHSSCC-CCCCHHHHHHHHHHHHHHHHHHHHHHHHCSSCGGGCCTTCTTH
T ss_pred HHHHHHhhcCCCCcceeccCChHHhHHHHHHhccCC-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccCCChHHH
Confidence 999999999999999999999999999999999876 7899999999999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHhhCCCCcEEecCCCCchHHHHHhhcCCCHHHHHHhhcCCCCCC-CCCCCccCCCCcccccccccCCCCC
Q 002323 272 IPGMKEMFDRAADLGVESIVIGMPHRGRLNVLGNVVRKPLRQIFSEFSGGTKPV-DEDGLYTGTGDVKYHLGTSYDRPTR 350 (936)
Q Consensus 272 i~gl~~li~~A~~~Gv~DivigM~HRgrlnvLa~vlg~p~~~ifaEf~G~~~~~-~~G~~~ggsGDVkyHlG~s~~~~~~ 350 (936)
+||+.++++.|+++|++|+|+||+||||+|+|+|++|+|+.+||+||+|+.+++ +. |+|||+||+|++....+.
T Consensus 156 ~~g~~~~l~~~~~l~~~D~v~gm~hRg~~~~Lan~~G~~~~~i~ae~~G~~~g~~~~-----g~gdv~~Hlg~~~~~~~~ 230 (868)
T 2yic_A 156 IPMMDAVIDQCAEHGLDEVVIAMPHRGRLNVLANIVGKPYSQIFSEFEGNLNPSQAH-----GSGDVKYHLGATGTYIQM 230 (868)
T ss_dssp HHHHHHHHHHHHHTTCSEEEEECCSTTHHHHHHHTTCCCHHHHTTTCC-----------------CGGGTCCEEEEEECS
T ss_pred HHHHHHHHHHhhhCCCCCEEEeccccchHHHHHHHhCCCHHHHHHHhcCCCCCCccC-----CCCCccccCCcccccccc
Confidence 999999999999999999999999999999999999999999999999998876 43 468999999988766555
Q ss_pred -CCceeeeeeccccCCCccccceeechhHHHHHhcCCCCC-----CceEEEEEecCcccCCCchHHHhhhccCCCCCccc
Q 002323 351 -GGKRIHLSLVANPSHLEAVDPVVVGKTRAKQYYSHDVDR-----TKNMGVLIHGDGSFAGQGVVYETLHLSALPNYTTG 424 (936)
Q Consensus 351 -~g~~I~lsl~~NPSHLeav~PVa~G~ArA~q~~~~d~~~-----~~~v~v~~hGDgA~sGQGvv~EtLNlA~LP~Y~~G 424 (936)
+++.+++++++||||||+++|+|+|+|+|.|+++.+.++ .+.++||+||||||++||+||||||||.+.+|.||
T Consensus 231 ~g~~~v~l~l~~n~s~Lg~~~P~A~G~A~A~k~~~~~~~~~~~~~~~~~vv~~~GDGa~~~eG~v~Ealn~A~~~~lp~g 310 (868)
T 2yic_A 231 FGDNDIEVSLTANPSHLEAVDPVLEGLVRAKQDLLDTGEEGSDNRFSVVPLMLHGDAAFAGQGVVAETLNLALLRGYRTG 310 (868)
T ss_dssp SSSCEEEEEECCCCSSTTTTHHHHHHHHHHHHHHHTCSTTSSSCSCCEEEEEEEEHHHHHHCHHHHHHHTTTTCTTTCCS
T ss_pred CCCcceeeeecCCCccccccccHHHHHHHHHHhhccCCcccccccCCceEEEEECCcccccccHHHHHHHHHHhcCCCCC
Confidence 343899999999999999999999999999998644333 57999999999998669999999999999999999
Q ss_pred cEEEEEEeCCcccccCCCCCCCcchhhH------------------HHHHHHHHHHHHHHccCCCEEEEEEeeecCCCCC
Q 002323 425 GTIHIVVNNQVAFTTDPRAGRSSQYCTD------------------AVVHVCELAAEWRQKFHSDVVVDLVCYRRFGHNE 486 (936)
Q Consensus 425 GtIhIV~NNQigfTT~~~~~rss~y~tD------------------AV~~a~~~A~e~rr~f~~pvlIdlv~YRr~GHne 486 (936)
|+||||+||||||||++.+++++.|++| ||++|++.|++|||++++|||||++|||++|||+
T Consensus 311 ~vi~iv~NN~~g~st~~~~~~s~~~~~~~a~a~G~p~~~VdG~D~~av~~a~~~A~~~ar~~~~PvlIe~~tyR~~GHs~ 390 (868)
T 2yic_A 311 GTIHIVVNNQIGFTTAPTDSRSSEYCTDVAKMIGAPIFHVNGDDPEACAWVARLAVDFRQAFKKDVVIDMLCYRRRGHNE 390 (868)
T ss_dssp CCEEEEEECSCBTTBCHHHHCSSSSTTGGGGGGTCCEEEEETTCHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCSCSST
T ss_pred CeEEEEEcCCcccccCccccccccCHHHHHHhCCCcEEEEeCCCHHHHHHHHHHHHHHHHhCCCCEEEEEEeecCCCcCc
Confidence 9999999999999998887888888875 9999999999999999999999999999999999
Q ss_pred CCCCCCCCHHHHHHHHcCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhhhcCC-Cccch--hhhhccCCC
Q 002323 487 IDEPSFTQPKMYQVIRSHPSAFEIYQKKLLESAQVTQEDINRIQEKVNTILNEEFMASKDYVP-KRRDW--LSAYWAGFK 563 (936)
Q Consensus 487 ~Ddp~ytqp~~y~~i~~~~dpl~~y~~~Li~eGilt~eei~~i~~~~~~~l~~a~~~A~~~~p-~~~~~--~~~~w~~~~ 563 (936)
+|+|+||+|.||+.|++++||+.+|+++|+++|++|++++++++++++++|+++++.|++..| .+.+| +...|.+
T Consensus 391 ~D~p~~~~p~~~~~~~~~~dPi~~~~~~L~~~G~~t~ee~~~i~~e~~~~v~~a~~~a~~~~p~~~~~~~~~~~~~~~-- 468 (868)
T 2yic_A 391 GDDPSMTQPYMYDVIDTKRGSRKAYTEALIGRGDISMKEAEDALRDYQGQLERVFNEVRELEKHEIEPSESVEADQQI-- 468 (868)
T ss_dssp TCCGGGTCHHHHHHHTTCCCHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHC----------------
T ss_pred ccccccCChHHHHHHHhCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccccccccccccc--
Confidence 999999999999999988999999999999999999999999999999999999999987433 32233 2233422
Q ss_pred CcccccccCCCCCChHHHHHHHHHhccCCCCCCchhHHHHHHHHHHHHHhcCCcccHHHHHHHHhhhhhhcCCcEEEecc
Q 002323 564 SPEQVSRIRNTGVKPEILKNVGKAITNLPENFKPHRGVKKVYEQRAQMIETGEGIDWAVGEALAFATLLVEGNHVRLSGQ 643 (936)
Q Consensus 564 ~~~~~~~~~~Tgv~~~~l~~i~~~~~~~P~~f~~h~~l~r~l~~R~~~~~~~~~iDWa~aE~LAfgsLl~eg~~Vrl~Gq 643 (936)
....+|+++.+.|+.|+++++++|++|++|+++++++++|.+|++. +.||||++|+|||||||.+|.+|||+||
T Consensus 469 -----~~~~~t~~~~~~l~~~~~~~~~~p~~~~~~~~v~~~~~~R~~m~~~-~~i~~a~~e~la~~~l~~~~~~V~~~G~ 542 (868)
T 2yic_A 469 -----PSKLATAVDKAMLQRIGDAHLALPEGFTVHPRVRPVLEKRREMAYE-GRIDWAFAELLALGSLIAEGKLVRLSGQ 542 (868)
T ss_dssp --------CCCCCCHHHHHHHHHHTTCCCTTCCCCTTTHHHHHHHHHHHHH-CCBCHHHHHHHHHHHHHHTTCEEEEEET
T ss_pred -----ccCCCCccCHHHHHHHHHhhccCCcccccchhHHHHHHHHHHHhhh-hhhhHHHHHHHHHHHHHhcCCCEEEEcC
Confidence 1245799999999999999999999999999999999999999887 7799999999999999999999999999
Q ss_pred cCCCcccccccceeeecCCCceeecCCCC------cccCCCcceEEEccCcchhHHHHHHhhhccCCCCcceeeeccchh
Q 002323 644 DVERGTFSHRHSVLHDQETGEKYCPLDHV------MMNQDEEMFTVSNSSLSEFGVLGFELGYSMENPNSLVLWEAQFGD 717 (936)
Q Consensus 644 Dv~rGtF~~RHavl~dq~t~~~y~pL~~l------~~~~~~g~~rV~nspLSE~avlG~e~G~sl~g~~~LviwEaqFgD 717 (936)
||+||||+|||||||||+||..|.||++| . ++++++||+||||||++++||++|||+.|+++++|||+||||
T Consensus 543 Dv~~~Tfs~rh~v~~d~~~g~~~~~~~~l~~~~~~~--~~~~p~Rv~ds~IsE~~~vG~a~G~A~~G~~~~~i~eaqf~d 620 (868)
T 2yic_A 543 DTQRGTFTQRHAVIVDRKTGEEFTPLQLLATNPDGT--PTGGKFLVYNSALSEFAAVGFEYGYSVGNPDAMVLWEAQFGD 620 (868)
T ss_dssp TTTTCTTSCCCSSEECTTTCCEECGGGGGGBCTTSC--BCSCEEEEEECCSCSHHHHHHHHHHHHHCTTSEEEEECSSGG
T ss_pred cCCccchhhcchhccccCCCceecchhhhcccccch--hhcCCcEEEECCccHHHHHHHHHHHHccCCCCceEEEEehHH
Confidence 99999999999999999999999999999 7 789999999999999999999999999999999999999999
Q ss_pred hhhhHHHHHHHHHhhhhhhhcCccccEEEcCccCCCCCccccCchhhhhhhcCCCCCCcccCCCchhhhhccccceEEEE
Q 002323 718 FANGAQVIFDQFLSSGESKWLRQTGLVVLLPHGYDGQGPEHSSARLERFLQMSDDNPFVIPEMDPTLRKQIQECNWQIVN 797 (936)
Q Consensus 718 F~n~Aq~iidqfi~~~~~kw~~~s~lv~~lPhG~~G~GpeHSs~RiERfLQl~~~~~~~~~~~pg~~~~~~~~~N~~Vv~ 797 (936)
|+|+||++||||++++++||++++||||++||||+|+||+|||+|+|||||||+. | ||+||+
T Consensus 621 F~~~AQ~~~DQ~i~~~~~k~~~~~~vvi~~p~G~~G~Gp~Hs~~~~E~~l~l~~~--------p----------nm~V~~ 682 (868)
T 2yic_A 621 FVNGAQSIIDEFISSGEAKWGQLSDVVLLLPHGHEGQGPDHTSGRIERFLQLWAE--------G----------SMTIAM 682 (868)
T ss_dssp GGGGGHHHHHHTTTTHHHHHCCCCCCEEEEECCCSSSCTTSSCCCHHHHHHHCCT--------T----------SCEEEC
T ss_pred HHhhHHHHHHHHHHHHHHHhCCCCCEEEEecCCCCCCChhhcCCcHHHHHhcCCC--------C----------CCEEEE
Confidence 9999999999999999999999999999999999999999999999999999986 3 699999
Q ss_pred cCCHHHHHHHHHHHHhcCCCCcEEEEccccccCCCCCCCCcccccccCCCCCCCCCCCceeEeecCCCC--CCCCCCCcc
Q 002323 798 VTTPANYFHVLRRQIHRGFRKPLIVISPKNLLRHKDCKSNLSEFDDVQGHPGFDKQGTRFKRLIKDQNG--HSDLEEGIR 875 (936)
Q Consensus 798 pstpa~~fhlLrrq~~r~~~~Pli~~~pK~Llr~~~~~S~l~ef~~~~~~~~~~~pg~~F~~vi~d~~~--~~~~~~~v~ 875 (936)
||||+|||||||+|+++++++|||||+||+|||++.++|+++||.+ +.|+++|++... .+.+.++||
T Consensus 683 Ps~p~~~~~lLr~a~~~~~~~Pvii~~pk~llR~~~~~~~~~~~~~-----------~~f~~~ig~~~~~~~l~~g~dv~ 751 (868)
T 2yic_A 683 PSTPANYFHLLRRHGKDGIQRPLIVFTPKSMLRNKAAVSDIRDFTE-----------SKFRSVLEEPMYTDGEGDRNKVT 751 (868)
T ss_dssp CCSHHHHHHHHHHHHHSSCCCCEEEEECSGGGGCTTSCBCHHHHHS-----------CCCCSEECCHHHHTSSCCGGGCC
T ss_pred eCCHHHHHHHHHHHHhcCCCCcEEEEechHHhCCCCCCCCccccCC-----------CCceecCCcceeecccccCCcee
Confidence 9999999999999999888999999999999999999999999875 679999987531 024578899
Q ss_pred EEEEeCchhHHHHHHhhcccC-Cce
Q 002323 876 RLVLCSGKVFITSLMKGGRSA-VQV 899 (936)
Q Consensus 876 rvilcsGkvyydL~~~r~~~~-~~~ 899 (936)
|+|+|+||+||+|.++|++.+ .+|
T Consensus 752 r~Ii~~G~~~~~l~aa~~~~g~i~v 776 (868)
T 2yic_A 752 RLLLTSGKIYYELAARKAKENREDV 776 (868)
T ss_dssp EEEEECSTHHHHHHHHHHHHTCTTE
T ss_pred EEEEEecHHHHHHHHHHHhCCCCCE
Confidence 999999999999999987766 443
No 4
>2bfd_A 2-oxoisovalerate dehydrogenase alpha subunit; oxidoreductase, multi-enzyme complex, acylation, oxidative decarboxylation, maple syrup urine disease; HET: TDP; 1.39A {Homo sapiens} SCOP: c.36.1.11 PDB: 1v16_A* 2bfc_A* 1v1r_A* 1olu_A* 2bfb_A* 1v1m_A* 2bew_A* 1dtw_A* 1olx_A* 1ols_A* 1wci_A* 1x80_A* 2beu_A* 1u5b_A* 2bev_A* 1v11_A* 1x7x_A* 1x7y_A* 1x7w_A* 1x7z_A* ...
Probab=100.00 E-value=8.6e-55 Score=491.84 Aligned_cols=343 Identities=14% Similarity=0.170 Sum_probs=276.9
Q ss_pred ccccccccCCHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhccc---cccCCcchhhhhHHHHH
Q 002323 203 IGYEYMHIADRDQCNWLRDKIETPTPMQYNRQRREVILDRLIWSTQFENFLATKWTTAKR---FGLEGGETLIPGMKEMF 279 (936)
Q Consensus 203 ig~E~~hi~~~e~r~Wl~~~iE~~~~~~ls~e~~~~il~~M~~ar~fE~fl~~k~~~~Kr---fgleG~Eali~gl~~li 279 (936)
-++++++|.|++.+ |+.. ...+.+++|+++++|++|+++|.||+++.++|+++|. ++++|+|++++|+..++
T Consensus 29 ~~~~~~~~l~~~g~-~~~~----~~~~~~~~e~~~~~y~~M~~~r~fe~~~~~~~~~gri~~~~~~~GqEa~~vg~~~al 103 (400)
T 2bfd_A 29 SGIPIYRVMDRQGQ-IINP----SEDPHLPKEKVLKLYKSMTLLNTMDRILYESQRQGRISFYMTNYGEEGTHVGSAAAL 103 (400)
T ss_dssp SCSCEECSBCTTSC-BSCG----GGCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSSCCCCCTTCHHHHHHHHHTS
T ss_pred CCCCeeEEECCCCC-CCCc----cccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcceeecCCChHHHHHHHHHhc
Confidence 35688999999997 4432 2236799999999999999999999999999998773 57999999999876544
Q ss_pred HHHhhCCCCcEEecCCCCchHHHHHhhcCCCHHHHHHhhcCCCCCCCCCCCccCCCCcccccccccCCCCCCCceeeeee
Q 002323 280 DRAADLGVESIVIGMPHRGRLNVLGNVVRKPLRQIFSEFSGGTKPVDEDGLYTGTGDVKYHLGTSYDRPTRGGKRIHLSL 359 (936)
Q Consensus 280 ~~A~~~Gv~DivigM~HRgrlnvLa~vlg~p~~~ifaEf~G~~~~~~~G~~~ggsGDVkyHlG~s~~~~~~~g~~I~lsl 359 (936)
+.+|+|++ +||||+.++++ |+++.++|+||+|+.+++++|+ ++++|++.. + +.+
T Consensus 104 ------~~~D~v~~-~yR~~~~~~~~--G~~~~~~l~e~~g~~~g~~~G~------~~~~H~~~~-~----------~~~ 157 (400)
T 2bfd_A 104 ------DNTDLVFG-QAREAGVLMYR--DYPLELFMAQCYGNISDLGKGR------QMPVHYGCK-E----------RHF 157 (400)
T ss_dssp ------CTTSEEEC-CSCCHHHHHHT--TCCHHHHHHHHHTCTTCTTTTC------SCSSCCCBT-T----------TTB
T ss_pred ------CCCCEEEe-cCcCHHHHHHc--CCCHHHHHHHhcCCCCCCCCCC------CCCcCCccc-c----------cCc
Confidence 56899998 99999988887 9999999999999988877642 367999743 2 236
Q ss_pred ccccCCCccccceeechhHHHHHhcCCCCCCceEEEEEecCcccCCCchHHHhhhcc---CCCCCccccEEEEEEeCCcc
Q 002323 360 VANPSHLEAVDPVVVGKTRAKQYYSHDVDRTKNMGVLIHGDGSFAGQGVVYETLHLS---ALPNYTTGGTIHIVVNNQVA 436 (936)
Q Consensus 360 ~~NPSHLeav~PVa~G~ArA~q~~~~d~~~~~~v~v~~hGDgA~sGQGvv~EtLNlA---~LP~Y~~GGtIhIV~NNQig 436 (936)
.++++|||.+.|+|+|+|+|.++++.+ .++||++||||++ ||+|||+||+| +|| +||||.||+||
T Consensus 158 ~~~~g~lG~~lp~AvG~AlA~~~~~~~-----~~vv~~~GDGa~~-~G~~~Eal~~A~~~~lp------vi~vv~NN~~~ 225 (400)
T 2bfd_A 158 VTISSPLATQIPQAVGAAYAAKRANAN-----RVVICYFGEGAAS-EGDAHAGFNFAATLECP------IIFFCRNNGYA 225 (400)
T ss_dssp CCCCSSTTTHHHHHHHHHHHHHHHTCC-----CCEEEEEETTGGG-SHHHHHHHHHHHHTTCC------EEEEEEECSEE
T ss_pred cccCccccccccHHHHHHHhhhhhCCC-----CeEEEEECchhhh-cChHHHHHHHHHHHCcC------EEEEEECCcee
Confidence 788999999999999999999988765 8999999999997 99999999999 899 99999999999
Q ss_pred cccCCCCCCCcchhhH------------------HHHHHHHHHHHHHHccCCCEEEEEEeeecCCCCCCCCCC-CCCHHH
Q 002323 437 FTTDPRAGRSSQYCTD------------------AVVHVCELAAEWRQKFHSDVVVDLVCYRRFGHNEIDEPS-FTQPKM 497 (936)
Q Consensus 437 fTT~~~~~rss~y~tD------------------AV~~a~~~A~e~rr~f~~pvlIdlv~YRr~GHne~Ddp~-ytqp~~ 497 (936)
++|+...+.+..++++ ||+.|++.|++++|++++|+|||++|||++|||++|+|+ ||+|+|
T Consensus 226 i~~~~~~~~~~~d~~~~a~a~G~~~~~VdG~D~~av~~a~~~A~~~ar~~~~P~lIe~~tyR~~gHs~~D~~~~Yr~~~e 305 (400)
T 2bfd_A 226 ISTPTSEQYRGDGIAARGPGYGIMSIRVDGNDVFAVYNATKEARRRAVAENQPFLIEAMTYRIGHASTSDDSSAFRSVDE 305 (400)
T ss_dssp TTEEGGGTCSSSTTGGGTGGGTCEEEEEETTCHHHHHHHHHHHHHHHHHHTCCEEEEEECCCCC--CC------------
T ss_pred eeecccccCCCCCHHHHHHHcCCcEEEEeCCCHHHHHHHHHHHHHHHHhCCCCEEEEEEeeeeCCCCCCCCCccCCCHHH
Confidence 9998776666544432 999999999999999999999999999999999999986 999999
Q ss_pred HHHHHcCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhhhcC-CCccchhhhhccCCCCcccccccCCCCC
Q 002323 498 YQVIRSHPSAFEIYQKKLLESAQVTQEDINRIQEKVNTILNEEFMASKDYV-PKRRDWLSAYWAGFKSPEQVSRIRNTGV 576 (936)
Q Consensus 498 y~~i~~~~dpl~~y~~~Li~eGilt~eei~~i~~~~~~~l~~a~~~A~~~~-p~~~~~~~~~w~~~~~~~~~~~~~~Tgv 576 (936)
++.|++|+||+.+|+++|+++|++|++++++++++++++|+++++.+++.+ |+..+.++++|... +..
T Consensus 306 ~~~~~~~~dPl~~~~~~L~~~g~~~~~~~~~i~~~~~~~v~~a~~~a~~~~~p~~~~~~~~vy~~~-----------~~~ 374 (400)
T 2bfd_A 306 VNYWDKQDHPISRLRHYLLSQGWWDEEQEKAWRKQSRRKVMEAFEQAERKPKPNPNLLFSDVYQEM-----------PAQ 374 (400)
T ss_dssp -------CCHHHHHHHHHTTTTCCCHHHHHHHHHHHHHHHHHHHHHHHHSCBCCGGGGSTTSSSSC-----------CHH
T ss_pred HHHHHhcCCHHHHHHHHHHHCCCCChHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHhhccC-----------CHH
Confidence 999998889999999999999999999999999999999999999998766 67777777777642 223
Q ss_pred ChHHHHHHHHHhccCCCCCCchh
Q 002323 577 KPEILKNVGKAITNLPENFKPHR 599 (936)
Q Consensus 577 ~~~~l~~i~~~~~~~P~~f~~h~ 599 (936)
..+.++++.+.+...|++|.+..
T Consensus 375 l~~q~~~~~~~~~~~~~~~~~~~ 397 (400)
T 2bfd_A 375 LRKQQESLARHLQTYGEHYPLDH 397 (400)
T ss_dssp HHHHHHHHHHHHHHHGGGSCGGG
T ss_pred HHHHHHHHHHHHHhCCCcCCccc
Confidence 45678888888888898886543
No 5
>1qs0_A 2-oxoisovalerate dehydrogenase alpha-subunit; heterotetramer, THDP cofactor, oxidoreductase; HET: TDP; 2.40A {Pseudomonas putida} SCOP: c.36.1.11 PDB: 2bp7_A
Probab=100.00 E-value=1.8e-54 Score=489.84 Aligned_cols=314 Identities=15% Similarity=0.185 Sum_probs=274.1
Q ss_pred CccccccccCCHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhccccc----cCCcchhhhhHHH
Q 002323 202 SIGYEYMHIADRDQCNWLRDKIETPTPMQYNRQRREVILDRLIWSTQFENFLATKWTTAKRFG----LEGGETLIPGMKE 277 (936)
Q Consensus 202 ~ig~E~~hi~~~e~r~Wl~~~iE~~~~~~ls~e~~~~il~~M~~ar~fE~fl~~k~~~~Krfg----leG~Eali~gl~~ 277 (936)
++++++++|.|++++ |+. +..+.+++|+++++|+.|+++|.||+++.++|+ +|||+ ++|+|++++|+..
T Consensus 48 ~~~~~~~~~ld~~g~-~~~-----~~~~~~~~e~~~~~y~~M~~~R~fe~~~~~~~~-qgr~~~~~~~~GqEA~~vg~~~ 120 (407)
T 1qs0_A 48 DLSYSLVRVLDEQGD-AQG-----PWAEDIDPQILRQGMRAMLKTRIFDSRMVVAQR-QKKMSFYMQSLGEEAIGSGQAL 120 (407)
T ss_dssp HHHTSCBCCBCTTSC-BCS-----GGGSSCCHHHHHHHHHHHHHHHHHHHHHHHHHH-TTSSSCCCCCTTTHHHHHHHHH
T ss_pred ccCCCeEEEECCCCC-CCC-----cCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHh-CCccccCcCCCChHHHHHHHHH
Confidence 457789999999987 442 123679999999999999999999999999997 56664 8999999999876
Q ss_pred HHHHHhhCCCCcEEecCCCCchHHHHHhhcCCCHHHHHHhhcCCCCCCCCCCCccCCCCcccccccccCCCCCCCceeee
Q 002323 278 MFDRAADLGVESIVIGMPHRGRLNVLGNVVRKPLRQIFSEFSGGTKPVDEDGLYTGTGDVKYHLGTSYDRPTRGGKRIHL 357 (936)
Q Consensus 278 li~~A~~~Gv~DivigM~HRgrlnvLa~vlg~p~~~ifaEf~G~~~~~~~G~~~ggsGDVkyHlG~s~~~~~~~g~~I~l 357 (936)
++ +.+|+|+ |+||||+++|+. |+++.+||+||+|+..+.++|+ + +++|++. .+.
T Consensus 121 al------~~~D~v~-~~yR~~~~~l~~--g~~~~~i~~el~g~~~~~~~G~--g----~~~h~~~-~~~---------- 174 (407)
T 1qs0_A 121 AL------NRTDMCF-PTYRQQSILMAR--DVSLVEMICQLLSNERDPLKGR--Q----LPIMYSV-REA---------- 174 (407)
T ss_dssp HS------CTTSEEE-CCSSCHHHHHHT--TCCHHHHHHHHHTCTTCTTTTC--S----CTTCCCB-GGG----------
T ss_pred hc------CCCCEEE-ecccchHHHHhc--CCCHHHHHHHHhCCCCCCCCCC--C----ceeecch-hcc----------
Confidence 65 5689999 699999999998 9999999999999988777653 2 4699974 332
Q ss_pred eeccccCCCccccceeechhHHHHHhcCCCCCCceEEEEEecCcccCCCchHHHhhhcc---CCCCCccccEEEEEEeCC
Q 002323 358 SLVANPSHLEAVDPVVVGKTRAKQYYSHDVDRTKNMGVLIHGDGSFAGQGVVYETLHLS---ALPNYTTGGTIHIVVNNQ 434 (936)
Q Consensus 358 sl~~NPSHLeav~PVa~G~ArA~q~~~~d~~~~~~v~v~~hGDgA~sGQGvv~EtLNlA---~LP~Y~~GGtIhIV~NNQ 434 (936)
+++++++|||.+.|+|+|+|+|.|+++.+ .++||++||||++ ||+|||+||+| +|| +||||.|||
T Consensus 175 ~~~~~~g~lG~~lp~AvGaA~A~k~~~~~-----~~vv~i~GDGa~~-~G~~~Eal~~A~~~~lp------vi~Vv~NN~ 242 (407)
T 1qs0_A 175 GFFTISGNLATQFVQAVGWAMASAIKGDT-----KIASAWIGDGATA-ESDFHTALTFAHVYRAP------VILNVVNNQ 242 (407)
T ss_dssp TBCCCCSSSSHHHHHHHHHHHHHHHTTCC-----CCEEEEEETGGGG-SHHHHHHHHHHHHHTCC------EEEEEEECS
T ss_pred CccccccccccchhHHHHHHHHHHHhCCC-----CEEEEEECCchhh-cChHHHHHHHHHHHCcC------EEEEEECCC
Confidence 46778999999999999999999998765 8999999999997 99999999999 899 999999999
Q ss_pred cccccCCCCCC-C-cchhh---------------H--HHHHHHHHHHHHHHccCCCEEEEEEeeecCCCCCCCCCC-CCC
Q 002323 435 VAFTTDPRAGR-S-SQYCT---------------D--AVVHVCELAAEWRQKFHSDVVVDLVCYRRFGHNEIDEPS-FTQ 494 (936)
Q Consensus 435 igfTT~~~~~r-s-s~y~t---------------D--AV~~a~~~A~e~rr~f~~pvlIdlv~YRr~GHne~Ddp~-ytq 494 (936)
|||+|+...+. . ..+.. | ||+.|++.|++++|++++|+|||++|||.+|||++|+|+ ||+
T Consensus 243 ~gi~~~~~~~~~~~~d~a~~a~a~G~~~~~VdG~D~~av~~a~~~A~~~ar~~~gP~lIe~~t~R~~Ghs~~Dd~~~Yr~ 322 (407)
T 1qs0_A 243 WAISTFQAIAGGESTTFAGRGVGCGIASLRVDGNDFVAVYAASRWAAERARRGLGPSLIEWVTYRAGPHSTSDDPSKYRP 322 (407)
T ss_dssp EETTEEGGGGTTTTCCSTHHHHHTTCEEEEEETTCHHHHHHHHHHHHHHHHTTSCCEEEEEECCCCSCSSTTCCGGGTSC
T ss_pred cceeeccccccCCCCCHHHHHHHcCCeEEEEcCCCHHHHHHHHHHHHHHHHhcCCCEEEEEEeeccCCcCCCCCccccCC
Confidence 99999765432 1 11110 2 999999999999999999999999999999999999886 999
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhhhc------C-CCccchhhhhccC
Q 002323 495 PKMYQVIRSHPSAFEIYQKKLLESAQVTQEDINRIQEKVNTILNEEFMASKDY------V-PKRRDWLSAYWAG 561 (936)
Q Consensus 495 p~~y~~i~~~~dpl~~y~~~Li~eGilt~eei~~i~~~~~~~l~~a~~~A~~~------~-p~~~~~~~~~w~~ 561 (936)
++||+.|++ +||+.+|+++|+++|++|++++++|+++++++|++++++|++. + |++.++++++|..
T Consensus 323 ~~e~~~~~~-~DPi~~~~~~L~~~g~~~~~~~~~i~~~~~~~v~~a~~~a~~~~~~~~~p~p~~~~~~~~vy~~ 395 (407)
T 1qs0_A 323 ADDWSHFPL-GDPIARLKQHLIKIGHWSEEEHQATTAEFEAAVIAAQKEAEQYGTLANGHIPSAASMFEDVYKE 395 (407)
T ss_dssp TTHHHHCTT-CCHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHHHHHHHTTCCSSSCCCCCSSGGGSSSSSS
T ss_pred HHHHHHHhc-CCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHhcccccCCCCCCHHHHHhhccCC
Confidence 999999995 8999999999999999999999999999999999999999873 3 7778889998875
No 6
>2ozl_A PDHE1-A type I, pyruvate dehydrogenase E1 component alpha subunit, somatic form; pyruvate_dehydrogenase_complex, human, multienzyme_complex_component; HET: TPP; 1.90A {Homo sapiens} SCOP: c.36.1.11 PDB: 1ni4_A* 3exe_A* 3exi_A 3exh_A* 3exg_A 3exf_A*
Probab=100.00 E-value=4.7e-54 Score=480.49 Aligned_cols=294 Identities=18% Similarity=0.261 Sum_probs=260.6
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhccccc----cCCcchhhhhHHHHHHHHhhCCCCcEEecCCCCchHHHHH
Q 002323 229 MQYNRQRREVILDRLIWSTQFENFLATKWTTAKRFG----LEGGETLIPGMKEMFDRAADLGVESIVIGMPHRGRLNVLG 304 (936)
Q Consensus 229 ~~ls~e~~~~il~~M~~ar~fE~fl~~k~~~~Krfg----leG~Eali~gl~~li~~A~~~Gv~DivigM~HRgrlnvLa 304 (936)
+.+++|+++++|+.|+++|.||+++..+|+++|..| ++|+|++++|+..+++ .+|+|++ +||+++.+|+
T Consensus 29 ~~l~~e~l~~~yr~M~~~R~~e~~~~~l~~~g~i~gf~~~~~GqEa~~vg~~~al~------~~D~i~~-~yR~~~~~~~ 101 (365)
T 2ozl_A 29 TVLTREDGLKYYRMMQTVRRMELKADQLYKQKIIRGFCHLCDGQEACCVGLEAGIN------PTDHLIT-AYRAHGFTFT 101 (365)
T ss_dssp EEEEHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSCSCCCCCTTCHHHHHHHHHTSC------TTSEEEC-CSCCHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccccccCCCChHHHHHHHHHhhC------CCCEEeh-HHHHHHHHHh
Confidence 468999999999999999999999999999887533 7999999999877664 4799998 8999999998
Q ss_pred hhcCCCHHHHHHhhcCCCCCCCCCCCccCCCCcccccccccCCCCCCCceeeeeeccccCCCccccceeechhHHHHHhc
Q 002323 305 NVVRKPLRQIFSEFSGGTKPVDEDGLYTGTGDVKYHLGTSYDRPTRGGKRIHLSLVANPSHLEAVDPVVVGKTRAKQYYS 384 (936)
Q Consensus 305 ~vlg~p~~~ifaEf~G~~~~~~~G~~~ggsGDVkyHlG~s~~~~~~~g~~I~lsl~~NPSHLeav~PVa~G~ArA~q~~~ 384 (936)
+ |+|+.+||+||+|+.+++++|+ ||+ ||++ +. + +.++.+++|.+.|+|+|+|+|.|+++
T Consensus 102 ~--G~~~~~i~~e~~g~~~g~~~g~--gg~----~H~~-~~--~----------~~~~~g~~G~~lp~A~G~A~A~~~~~ 160 (365)
T 2ozl_A 102 R--GLSVREILAELTGRKGGCAKGK--GGS----MHMY-AK--N----------FYGGNGIVGAQVPLGAGIALACKYNG 160 (365)
T ss_dssp T--TCCHHHHHHHHTTCTTSTTTTS--SCT----TCCC-BT--T----------BCCCCCSTTTHHHHHHHHHHHHHHHT
T ss_pred c--CCCHHHHHHHHcCCCCCCCCCC--CCC----CCcC-cc--c----------cCCCcchhhhhhHHHHHHHHHHHhcC
Confidence 8 9999999999999999988765 555 8984 21 2 34456779999999999999999987
Q ss_pred CCCCCCceEEEEEecCcccCCCchHHHhhhcc---CCCCCccccEEEEEEeCCcccccCCCCC-CCcchhh---------
Q 002323 385 HDVDRTKNMGVLIHGDGSFAGQGVVYETLHLS---ALPNYTTGGTIHIVVNNQVAFTTDPRAG-RSSQYCT--------- 451 (936)
Q Consensus 385 ~d~~~~~~v~v~~hGDgA~sGQGvv~EtLNlA---~LP~Y~~GGtIhIV~NNQigfTT~~~~~-rss~y~t--------- 451 (936)
.+ .++||+|||||++ ||+|||+||+| +|| +||||+||||||+|+...+ ++..|++
T Consensus 161 ~~-----~~vv~~~GDGa~~-~G~~~Ealn~A~~~~lp------vi~vv~NN~~g~~t~~~~~~~~~~~~~ra~g~p~~~ 228 (365)
T 2ozl_A 161 KD-----EVCLTLYGDGAAN-QGQIFEAYNMAALWKLP------CIFICENNRYGMGTSVERAAASTDYYKRGDFIPGLR 228 (365)
T ss_dssp CC-----CCEEEEEETTGGG-CHHHHHHHHHHHHTTCC------EEEEEEECSEETTEEHHHHCSCCCGGGTTTTSCEEE
T ss_pred CC-----ceEEEEECchhhh-ccHHHHHHHHHHHHCcC------EEEEEECCCcccCCCcccccCCCCHHHHhCCCCEEE
Confidence 65 8999999999987 99999999999 888 9999999999999963322 3334442
Q ss_pred ----H--HHHHHHHHHHHHHHccCCCEEEEEEeeecCCCCCCCCCC-CCCHHHHHHHHcCCCHHHHHHHHHHHcCCCCHH
Q 002323 452 ----D--AVVHVCELAAEWRQKFHSDVVVDLVCYRRFGHNEIDEPS-FTQPKMYQVIRSHPSAFEIYQKKLLESAQVTQE 524 (936)
Q Consensus 452 ----D--AV~~a~~~A~e~rr~f~~pvlIdlv~YRr~GHne~Ddp~-ytqp~~y~~i~~~~dpl~~y~~~Li~eGilt~e 524 (936)
| ||+.|++.|+++++++++|+|||++|||++|||++|++. ||+|+||+.|++++||+.+|+++|+++|++|++
T Consensus 229 VdG~D~~av~~a~~~A~~~~r~~~gP~lIe~~t~R~~gHs~~D~~~~Yr~~~e~~~~~~~~dpi~~~~~~L~~~g~~~~~ 308 (365)
T 2ozl_A 229 VDGMDILCVREATRFAAAYCRSGKGPILMELQTYRYHGHEMSDPGVSYRTREEIQEVRSKSDPIMLLKDRMVNSNLASVE 308 (365)
T ss_dssp EETTCHHHHHHHHHHHHHHHHTTCCCEEEEEECCCSSCSSTTCCSCSSSCHHHHHHHHHHHCHHHHHHHHHHHTTSSCHH
T ss_pred EeCCCHHHHHHHHHHHHHHHHhCCCCEEEEEEeecCCCCCCCCCCcccCCHHHHHHHHhCCCHHHHHHHHHHhcCCCCHH
Confidence 2 999999999999999999999999999999999999875 999999999997789999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhcC-CCccchhhhhccCC
Q 002323 525 DINRIQEKVNTILNEEFMASKDYV-PKRRDWLSAYWAGF 562 (936)
Q Consensus 525 ei~~i~~~~~~~l~~a~~~A~~~~-p~~~~~~~~~w~~~ 562 (936)
++++|+++++++|++++++|++.| |++.++++++|.+.
T Consensus 309 ~~~~i~~~~~~~v~~a~~~a~~~p~p~~~~~~~~vy~~~ 347 (365)
T 2ozl_A 309 ELKEIDVEVRKEIEDAAQFATADPEPPLEELGYHIYSSD 347 (365)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHSCCCCGGGTTCSSSSSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHhhhcCCC
Confidence 999999999999999999999887 88889999999764
No 7
>1w85_A Pyruvate dehydrogenase E1 component, alpha subunit; dehydrogenase, multienzyme complex, oxidoreductase; HET: TDP; 2.0A {Geobacillus stearothermophilus} SCOP: c.36.1.11 PDB: 3duf_A* 3dv0_A* 3dva_A* 1w88_A*
Probab=100.00 E-value=6.4e-53 Score=471.97 Aligned_cols=305 Identities=15% Similarity=0.215 Sum_probs=264.6
Q ss_pred ccccccccCCHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhccccc----cCCcchhhhhHHHH
Q 002323 203 IGYEYMHIADRDQCNWLRDKIETPTPMQYNRQRREVILDRLIWSTQFENFLATKWTTAKRFG----LEGGETLIPGMKEM 278 (936)
Q Consensus 203 ig~E~~hi~~~e~r~Wl~~~iE~~~~~~ls~e~~~~il~~M~~ar~fE~fl~~k~~~~Krfg----leG~Eali~gl~~l 278 (936)
-.+++++|.|++++ |+.. ...+.+++|+++++|+.|+++|.||+++.+.+ .+|||| ++|+|++++|+..+
T Consensus 18 ~~~~~~~~l~~~g~-~~~~----~~~~~l~~e~l~~~y~~M~~~R~fe~~~~~~~-~qgr~g~~~~~~G~Ea~~vg~~~~ 91 (368)
T 1w85_A 18 EQFPTFQILNEEGE-VVNE----EAMPELSDEQLKELMRRMVYTRILDQRSISLN-RQGRLGFYAPTAGQEASQIASHFA 91 (368)
T ss_dssp HTCCEECSBCTTSC-BSCG----GGCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH-HTTSCCSCCCCTTCHHHHHHHHHT
T ss_pred CCCCeeEEECCCCC-CCCc----cccCCCCHHHHHHHHHHHHHHHHHHHHHHHHh-hCCccccCCCCCCHHHHHHHHHHh
Confidence 34589999999997 4432 22357999999999999999999999996655 566678 89999999998776
Q ss_pred HHHHhhCCCCcEEecCCCCchHHHHHhhcCCCHHHHHHhhcCCCCCCCCCCCccCCCCcccccccccCCCCCCCceeeee
Q 002323 279 FDRAADLGVESIVIGMPHRGRLNVLGNVVRKPLRQIFSEFSGGTKPVDEDGLYTGTGDVKYHLGTSYDRPTRGGKRIHLS 358 (936)
Q Consensus 279 i~~A~~~Gv~DivigM~HRgrlnvLa~vlg~p~~~ifaEf~G~~~~~~~G~~~ggsGDVkyHlG~s~~~~~~~g~~I~ls 358 (936)
++ .+|++++| ||+|+.++++ |+++..+|+||+|+.+ ||+ +|. ++.
T Consensus 92 l~------~~D~v~~~-~R~~~~~~~~--G~~~~~~~~el~G~~~--------G~~----~h~--------------~~~ 136 (368)
T 1w85_A 92 LE------KEDFILPG-YRDVPQIIWH--GLPLYQAFLFSRGHFH--------GNQ----IPE--------------GVN 136 (368)
T ss_dssp CC------TTCEEECC-SSCHHHHHHT--TCCHHHHHHHHHTCGG--------GGC----CCT--------------TCC
T ss_pred cC------CcCEEEec-chhHHHHHhc--CCCHHHHHHHHCCCCC--------CCC----CCc--------------ccc
Confidence 54 58999995 9999999877 9999999999999754 234 451 125
Q ss_pred eccccCCCccccceeechhHHHHHhcCCCCCCceEEEEEecCcccCCCchHHHhhhcc---CCCCCccccEEEEEEeCCc
Q 002323 359 LVANPSHLEAVDPVVVGKTRAKQYYSHDVDRTKNMGVLIHGDGSFAGQGVVYETLHLS---ALPNYTTGGTIHIVVNNQV 435 (936)
Q Consensus 359 l~~NPSHLeav~PVa~G~ArA~q~~~~d~~~~~~v~v~~hGDgA~sGQGvv~EtLNlA---~LP~Y~~GGtIhIV~NNQi 435 (936)
+.++++|+|.+.|+|+|+|+|.++++.+ .++||++||||++ ||+++|+||+| +|| +||||.||+|
T Consensus 137 ~~~~~g~lG~~lp~AvG~A~A~~~~~~~-----~~vv~i~GDGa~~-~G~~~Eal~~A~~~~lp------vi~vv~NN~~ 204 (368)
T 1w85_A 137 VLPPQIIIGAQYIQAAGVALGLKMRGKK-----AVAITYTGDGGTS-QGDFYEGINFAGAFKAP------AIFVVQNNRF 204 (368)
T ss_dssp BCCCCCSTTHHHHHHHHHHHHHHHTTCS-----CCEEEEEETGGGG-SHHHHHHHHHHHHTTCC------EEEEEEECSE
T ss_pred cCCCccccCccccHHHHHHHHhHhhCCC-----CeEEEEEchhhhh-hcHHHHHHHHHHHHCcC------EEEEEEcCCc
Confidence 6789999999999999999999998765 8999999999999 99999999999 999 9999999999
Q ss_pred ccccCCCCCCCcchhhH------------------HHHHHHHHHHHHHHccCCCEEEEEEeeecCCCC-CCCCCC-CCCH
Q 002323 436 AFTTDPRAGRSSQYCTD------------------AVVHVCELAAEWRQKFHSDVVVDLVCYRRFGHN-EIDEPS-FTQP 495 (936)
Q Consensus 436 gfTT~~~~~rss~y~tD------------------AV~~a~~~A~e~rr~f~~pvlIdlv~YRr~GHn-e~Ddp~-ytqp 495 (936)
||+|+...+++..++++ +|+.|++.|++++|++++|+|||++|||++||| ++|+|+ ||++
T Consensus 205 gi~~~~~~~~~~~d~~~~a~a~G~~~~~VdG~D~~av~~a~~~A~~~~r~~~gP~lIe~~t~r~~gHs~~~Ddp~~yr~~ 284 (368)
T 1w85_A 205 AISTPVEKQTVAKTLAQKAVAAGIPGIQVDGMDPLAVYAAVKAARERAINGEGPTLIETLCFRYGPHTMSGDDPTRYRSK 284 (368)
T ss_dssp ETTEEGGGTCSCSCSGGGGGGTTCCEEEEETTCHHHHHHHHHHHHHHHHTTSCCEEEEEECCCSSCSCSSCC------CH
T ss_pred cceeccccccCCCCHHHHHHHCCCCEEEEcCCCHHHHHHHHHHHHHHHHhcCCCEEEEEEeeccCCCCCCCCCccccCCH
Confidence 99998776666544432 999999999999999999999999999999999 999887 9999
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhhhcC-CCccchhhhhccC
Q 002323 496 KMYQVIRSHPSAFEIYQKKLLESAQVTQEDINRIQEKVNTILNEEFMASKDYV-PKRRDWLSAYWAG 561 (936)
Q Consensus 496 ~~y~~i~~~~dpl~~y~~~Li~eGilt~eei~~i~~~~~~~l~~a~~~A~~~~-p~~~~~~~~~w~~ 561 (936)
+||+.|++ +||+.+|+++|+++|++|++++++|+++++++|++++++|++.| |++.++++++|..
T Consensus 285 ~e~~~~~~-~dPi~~~~~~L~~~g~~~~~~~~~i~~~~~~~v~~a~~~a~~~p~p~~~~~~~~vy~~ 350 (368)
T 1w85_A 285 ELENEWAK-KDPLVRFRKFLEAKGLWSEEEENNVIEQAKEEIKEAIKKADETPKQKVTDLISIMFEE 350 (368)
T ss_dssp HHHHHHHT-TCHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHHHHHHTSCCCCHHHHHHTSCSS
T ss_pred HHHHHHhc-CCHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHhhccCC
Confidence 99999995 99999999999999999999999999999999999999999887 8888899999865
No 8
>1umd_A E1-alpha, 2-OXO acid dehydrogenase alpha subunit; alpha(2)beta(2) tetramer, structural genomics; HET: TDP; 1.90A {Thermus thermophilus} SCOP: c.36.1.11 PDB: 1um9_A* 1umc_A* 1umb_A*
Probab=100.00 E-value=1.8e-49 Score=444.01 Aligned_cols=314 Identities=16% Similarity=0.208 Sum_probs=274.5
Q ss_pred ccccccccCCHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhccc---cccCCcchhhhhHHHHH
Q 002323 203 IGYEYMHIADRDQCNWLRDKIETPTPMQYNRQRREVILDRLIWSTQFENFLATKWTTAKR---FGLEGGETLIPGMKEMF 279 (936)
Q Consensus 203 ig~E~~hi~~~e~r~Wl~~~iE~~~~~~ls~e~~~~il~~M~~ar~fE~fl~~k~~~~Kr---fgleG~Eali~gl~~li 279 (936)
-.+++++|.|++++ |+.. ..+.+++++++++|+.|+++|.||.++..++.+++. +++.|+|++++++...+
T Consensus 11 ~~~~~~~~l~~~g~-~~~~-----~~~~l~~~~l~~l~~~m~~~R~~~~~~~~~~~~G~~g~~~~~~G~ea~~~~~~~~l 84 (367)
T 1umd_A 11 FTEEPIRLIGEEGE-WLGD-----FPLDLEGEKLRRLYRDMLAARMLDERYTILIRTGKTSFIAPAAGHEAAQVAIAHAI 84 (367)
T ss_dssp SCSSCBCCBCTTSC-BCCS-----SCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCSCCCCCTTCHHHHHHHHHHS
T ss_pred CCCCeEEEECCCCC-CCCc-----cCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhCCCccCCCCCcCHHHHHHHHHHHc
Confidence 34678999999997 4332 235799999999999999999999999999998873 67899999999887766
Q ss_pred HHHhhCCCC-cEEecCCCCchHHHHHhhcCCCHHHHHHhhcCCCCCCCCCCCccCCCCcccccccccCCCCCCCceeeee
Q 002323 280 DRAADLGVE-SIVIGMPHRGRLNVLGNVVRKPLRQIFSEFSGGTKPVDEDGLYTGTGDVKYHLGTSYDRPTRGGKRIHLS 358 (936)
Q Consensus 280 ~~A~~~Gv~-DivigM~HRgrlnvLa~vlg~p~~~ifaEf~G~~~~~~~G~~~ggsGDVkyHlG~s~~~~~~~g~~I~ls 358 (936)
+ .+ |++++ +||+++.++++ |+++.++|++|.|+.++++.|+ ++++|++.. +. .
T Consensus 85 ~------~~rD~i~~-s~r~~~~~~~~--G~~~~~~l~~~~g~~~g~~~G~------~~~~h~~~~-~~----------~ 138 (367)
T 1umd_A 85 R------PGFDWVFP-YYRDHGLALAL--GIPLKELLGQMLATKADPNKGR------QMPEHPGSK-AL----------N 138 (367)
T ss_dssp C------TTTSEEEC-CTTTHHHHHHH--TCCHHHHHHHHHTBTTCTTTTC------SCSSCCCBT-TT----------T
T ss_pred C------CCCcEEEe-CcHHHHHHHHc--CCCHHHHHHHHhCCCCCCCCCC------CCCCCCccc-cc----------C
Confidence 4 25 99996 99999888888 9999999999999998876542 346899643 22 3
Q ss_pred eccccCCCccccceeechhHHHHHhcCCCCCCceEEEEEecCcccCCCchHHHhhhcc---CCCCCccccEEEEEEeCCc
Q 002323 359 LVANPSHLEAVDPVVVGKTRAKQYYSHDVDRTKNMGVLIHGDGSFAGQGVVYETLHLS---ALPNYTTGGTIHIVVNNQV 435 (936)
Q Consensus 359 l~~NPSHLeav~PVa~G~ArA~q~~~~d~~~~~~v~v~~hGDgA~sGQGvv~EtLNlA---~LP~Y~~GGtIhIV~NNQi 435 (936)
+.++++|+|++.|+++|+|+|.|+.+.+ .++||++||||++ +|+++|+||+| +|| +||||.||+|
T Consensus 139 ~~~~~g~lG~~l~~a~G~A~a~k~~~~~-----~~vv~i~GDGa~~-~G~~~Eal~~A~~~~lp------vi~vv~NN~~ 206 (367)
T 1umd_A 139 FFTVASPIASHVPPAAGAAISMKLLRTG-----QVAVCTFGDGATS-EGDWYAGINFAAVQGAP------AVFIAENNFY 206 (367)
T ss_dssp BCCCCSSTTTTHHHHHHHHHHHHHTTCC-----CCEEEEEETGGGG-SHHHHHHHHHHHHTTCS------EEEEEEECSE
T ss_pred cCCCCchhhhhhhHHHHHHHHHHHhCCC-----CeEEEEEcccccc-cCcHHHHHHHHHHhCcC------EEEEEecCCe
Confidence 5678999999999999999999998765 7999999999996 99999999999 899 9999999999
Q ss_pred ccccCCCCCCCcchhh----------------H--HHHHHHHHHHHHHHccCCCEEEEEEeeecCCCCCCCCCC-CCCHH
Q 002323 436 AFTTDPRAGRSSQYCT----------------D--AVVHVCELAAEWRQKFHSDVVVDLVCYRRFGHNEIDEPS-FTQPK 496 (936)
Q Consensus 436 gfTT~~~~~rss~y~t----------------D--AV~~a~~~A~e~rr~f~~pvlIdlv~YRr~GHne~Ddp~-ytqp~ 496 (936)
|++|+....++..+.+ | ||+.|++.|+++++++++|+|||++|||..|||++|+|+ ||+++
T Consensus 207 gi~~~~~~~~~~~d~~~~a~a~G~~~~~Vdg~d~~av~~a~~~A~~~a~~~~gP~lIe~~t~r~~Ghs~~D~~~~Yr~~~ 286 (367)
T 1umd_A 207 AISVDYRHQTHSPTIADKAHAFGIPGYLVDGMDVLASYYVVKEAVERARRGEGPSLVELRVYRYGPHSSADDDSRYRPKE 286 (367)
T ss_dssp ETTEEHHHHCSSSCSGGGGGGTTSCEEEEETTCHHHHHHHHHHHHHHHHTTCCCEEEEEECCCCSCSSTTCCGGGTSCHH
T ss_pred eeccChhhccCCCCHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHHHHhcCCCEEEEEEeecCCCCCCCCCccccCCHH
Confidence 9999765444433222 1 999999999999999999999999999999999999886 99999
Q ss_pred HHHHHHcCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhhhcC-CCccchhhhhccC
Q 002323 497 MYQVIRSHPSAFEIYQKKLLESAQVTQEDINRIQEKVNTILNEEFMASKDYV-PKRRDWLSAYWAG 561 (936)
Q Consensus 497 ~y~~i~~~~dpl~~y~~~Li~eGilt~eei~~i~~~~~~~l~~a~~~A~~~~-p~~~~~~~~~w~~ 561 (936)
||+.|++ +||+.+|+++|+++|++|++++++|++++++++++++++|++.| |++.++++++|..
T Consensus 287 e~~~~~~-~dPi~~~~~~L~~~g~~~~~~~~~i~~~~~~~v~~a~~~a~~~~~p~~~~~~~~vy~~ 351 (367)
T 1umd_A 287 EVAFWRK-KDPIPRFRRFLEARGLWNEEWEEDVREEIRAELERGLKEAEEAGPVPPEWMFEDVFAE 351 (367)
T ss_dssp HHHHHHT-TCHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTCBCCGGGGGTTSSSS
T ss_pred HHHHHHc-CCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHhhhcCC
Confidence 9999995 89999999999999999999999999999999999999999887 8888999999865
No 9
>2o1s_A 1-deoxy-D-xylulose-5-phosphate synthase; DXS, thiamine, isoprenoid, transferase; HET: TDP; 2.40A {Escherichia coli}
Probab=100.00 E-value=3.8e-33 Score=331.08 Aligned_cols=431 Identities=13% Similarity=0.140 Sum_probs=269.3
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccCCcchhhhhHHHHHHHHhhCCCCcEEe-cCCCCchHHHHHhhc
Q 002323 229 MQYNRQRREVILDRLIWSTQFENFLATKWTTAKRFGLEGGETLIPGMKEMFDRAADLGVESIVI-GMPHRGRLNVLGNVV 307 (936)
Q Consensus 229 ~~ls~e~~~~il~~M~~ar~fE~fl~~k~~~~KrfgleG~Eali~gl~~li~~A~~~Gv~Divi-gM~HRgrlnvLa~vl 307 (936)
..++.+++.++++.| |.+.-.+..+ .++---+.-|++.+..++...++ . .+|+++ ...||+.++.+..
T Consensus 21 ~~l~~~~l~~l~~~i---R~~~~~~~~~-~~Gh~~~~lg~~~~~~~l~~~~~----~-~~D~~v~~~gH~~y~~~~l~-- 89 (621)
T 2o1s_A 21 RLLPKESLPKLCDEL---RRYLLDSVSR-SSGHFASGLGTVELTVALHYVYN----T-PFDQLIWDVGHQAYPHKILT-- 89 (621)
T ss_dssp TTSCGGGHHHHHHHH---HHHHHHHSCG-GGCTHHHHHTTHHHHHHHHHHSC----T-TTSEEEESSSTTCHHHHHTT--
T ss_pred hhCCHHHHHHHHHHH---HHHHHHHHhh-cCCCcCCChhHHHHHHHHHhccC----C-CCCEEEEeCchHHHHHHHHh--
Confidence 457888888888887 3332222221 11111136788888777654332 1 467665 3489998887766
Q ss_pred CCCHHHH--HHhhcCCCCCCCCCCCccCCCCcccccccccCCCCCCCceeeeeeccccCCCccccceeechhHHHHHhcC
Q 002323 308 RKPLRQI--FSEFSGGTKPVDEDGLYTGTGDVKYHLGTSYDRPTRGGKRIHLSLVANPSHLEAVDPVVVGKTRAKQYYSH 385 (936)
Q Consensus 308 g~p~~~i--faEf~G~~~~~~~G~~~ggsGDVkyHlG~s~~~~~~~g~~I~lsl~~NPSHLeav~PVa~G~ArA~q~~~~ 385 (936)
|. .+++ |.++.|. + .|. .....+ + .....+|+|...|.|+|+|+|.++++.
T Consensus 90 G~-~~~~~~~r~~~g~------------~----g~~---~~~~s~-~------~~~~~G~~G~gl~~A~G~AlA~~~~~~ 142 (621)
T 2o1s_A 90 GR-RDKIGTIRQKGGL------------H----PFP---WRGESE-Y------DVLSVGHSSTSISAGIGIAVAAEKEGK 142 (621)
T ss_dssp TT-GGGGGGTTSTTSC------------C----SSC---CTTTCT-T------CCSCCSSSSCHHHHHHHHHHHHHHHTS
T ss_pred CC-HhhhhcccccCCC------------C----CCC---CCCCCC-C------CccCCcccchHHHHHHHHHHHHHHhCC
Confidence 65 2221 1111111 0 111 000000 0 112367899999999999999998876
Q ss_pred CCCCCceEEEEEecCcccCCCchHHHhhhcc---CCCCCccccEEEEEEeCCcccccCCCCCCC--------cch-----
Q 002323 386 DVDRTKNMGVLIHGDGSFAGQGVVYETLHLS---ALPNYTTGGTIHIVVNNQVAFTTDPRAGRS--------SQY----- 449 (936)
Q Consensus 386 d~~~~~~v~v~~hGDgA~sGQGvv~EtLNlA---~LP~Y~~GGtIhIV~NNQigfTT~~~~~rs--------s~y----- 449 (936)
+ ..+||+.|||++. +|.++|+||+| ++| +|+||.||+|+++++...+.. ..|
T Consensus 143 ~-----~~Vv~v~GDG~~~-~G~~~EaL~~A~~~~~p------li~vvnnN~~~i~~~~~~~~~~~~~~~~~~~y~~~~~ 210 (621)
T 2o1s_A 143 N-----RRTVCVIGDGAIT-AGMAFEAMNHAGDIRPD------MLVILNDNEMSISENVGALNNHLAQLLSGKLYSSLRE 210 (621)
T ss_dssp C-----CCEEEEEETTGGG-SHHHHHHHHHHHHHCCS------EEEEEEECC----------------------------
T ss_pred C-----CeEEEEEchhhhh-ccHHHHHHHHHHhhCCC------EEEEEeCCCcccCCCcchHHHHHHhhhcchhHHHHHH
Confidence 5 7899999999998 99999999999 999 999999999999987543110 000
Q ss_pred ------------------------------------------hh---H--HHHHHHHHHHHHHHccCCCEEEEEEeeecC
Q 002323 450 ------------------------------------------CT---D--AVVHVCELAAEWRQKFHSDVVVDLVCYRRF 482 (936)
Q Consensus 450 ------------------------------------------~t---D--AV~~a~~~A~e~rr~f~~pvlIdlv~YRr~ 482 (936)
.- | ++..|.+. +++.++|+||++.|+|-.
T Consensus 211 ~~~~~~~~~p~~~~~~~r~~~~~~~~~~p~~~~ea~G~~~~g~vdG~d~~~l~~al~~----A~~~~gP~lI~v~t~kg~ 286 (621)
T 2o1s_A 211 GGKKVFSGVPPIKELLKRTEEHIKGMVVPGTLFEELGFNYIGPVDGHDVLGLITTLKN----MRDLKGPQFLHIMTKKGR 286 (621)
T ss_dssp ----------------------------CHHHHHHTTCEEEEEEETTCHHHHHHHHHH----HHHSCSEEEEEEECCCTT
T ss_pred HHHHHHhccchHHHHHHHHHHHhhhccChhhHHHHCCCeEeeeeCCCCHHHHHHHHHH----HHHcCCCEEEEEEEeccc
Confidence 00 1 55555444 455689999999999999
Q ss_pred CCCCCC-CCCCCCHHHHHHHHcCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhhhcCCCccchhhhhccC
Q 002323 483 GHNEID-EPSFTQPKMYQVIRSHPSAFEIYQKKLLESAQVTQEDINRIQEKVNTILNEEFMASKDYVPKRRDWLSAYWAG 561 (936)
Q Consensus 483 GHne~D-dp~ytqp~~y~~i~~~~dpl~~y~~~Li~eGilt~eei~~i~~~~~~~l~~a~~~A~~~~p~~~~~~~~~w~~ 561 (936)
||.... +| ..|.. ..|.+. ..|. . .+ +..
T Consensus 287 G~~~~e~~~--------~~~H~-~~~f~~------~~~~-------------~---------~~---~~~---------- 316 (621)
T 2o1s_A 287 GYEPAEKDP--------ITFHA-VPKFDP------SSGC-------------L---------PK---SSG---------- 316 (621)
T ss_dssp CCCCC---------------------------------------------------------------------------
T ss_pred CCChhhcCc--------hhccC-CCCCCC------CcCc-------------c---------cc---ccc----------
Confidence 998432 12 12221 111110 0000 0 00 000
Q ss_pred CCCcccccccCCCCCChHHHHHHHHHhccCCCCCCchhHHHHHHHHHHHHHhcCCcccHHHHHHHHhhhhhhcCCcEEEe
Q 002323 562 FKSPEQVSRIRNTGVKPEILKNVGKAITNLPENFKPHRGVKKVYEQRAQMIETGEGIDWAVGEALAFATLLVEGNHVRLS 641 (936)
Q Consensus 562 ~~~~~~~~~~~~Tgv~~~~l~~i~~~~~~~P~~f~~h~~l~r~l~~R~~~~~~~~~iDWa~aE~LAfgsLl~eg~~Vrl~ 641 (936)
. .....+.++ ++|. .++.++.+|.+.
T Consensus 317 ------------~--~~~~~~~~~--------------------------------------~~l~--~~~~~d~~v~~~ 342 (621)
T 2o1s_A 317 ------------G--LPSYSKIFG--------------------------------------DWLC--ETAAKDNKLMAI 342 (621)
T ss_dssp ---------------CCBHHHHHH--------------------------------------HHHH--HHHHHCTTEEEE
T ss_pred ------------c--hHHHHHHHH--------------------------------------HHHH--HHHhhCcCEEEE
Confidence 0 000011111 1111 344567889999
Q ss_pred cccCCCcccccccceeeecCCCceeecCCCCcccCCCcceEEEccCcchhHHHHHHhhhccCCCCcceeeeccchhhhhh
Q 002323 642 GQDVERGTFSHRHSVLHDQETGEKYCPLDHVMMNQDEEMFTVSNSSLSEFGVLGFELGYSMENPNSLVLWEAQFGDFANG 721 (936)
Q Consensus 642 GqDv~rGtF~~RHavl~dq~t~~~y~pL~~l~~~~~~g~~rV~nspLSE~avlG~e~G~sl~g~~~LviwEaqFgDF~n~ 721 (936)
++|+..|+ +. .++. +++ +.|++|++|||.+++|+++|+|+.|.+| ++++ |++|+..
T Consensus 343 ~~d~~~~~-~~-----------------~~~~--~~~-~~r~~~~gIaE~~~~~~a~G~A~~G~rp--~~~~-~~~F~~~ 398 (621)
T 2o1s_A 343 TPAMREGS-GM-----------------VEFS--RKF-PDRYFDVAIAEQHAVTFAAGLAIGGYKP--IVAI-YSTFLQR 398 (621)
T ss_dssp ESSCTTTT-TC-----------------HHHH--HHC-TTTEEECCSCHHHHHHHHHHHHHTTCEE--EEEE-ETTGGGG
T ss_pred eCcccCCc-Ch-----------------HHHH--HhC-CCceEecCcCHHHHHHHHHHHHHCCCEE--EEEe-hHhHHHH
Confidence 99996552 21 4555 556 7899999999999999999999999988 9999 9999866
Q ss_pred HHHHHHHHHhhhhhhhcCccccEEEcCccC-CC-CCccccCchhhhhhhcCCCCCCcccCCCchhhhhccccceEEEEcC
Q 002323 722 AQVIFDQFLSSGESKWLRQTGLVVLLPHGY-DG-QGPEHSSARLERFLQMSDDNPFVIPEMDPTLRKQIQECNWQIVNVT 799 (936)
Q Consensus 722 Aq~iidqfi~~~~~kw~~~s~lv~~lPhG~-~G-~GpeHSs~RiERfLQl~~~~~~~~~~~pg~~~~~~~~~N~~Vv~ps 799 (936)
| +||++.... + ...|+|++++||. .| .||+||+. | |..++.++|| |+|+.|+
T Consensus 399 a---~dqi~~~~a-~--~~~pvv~~~~~~g~~g~~G~tH~~~--~--------d~~~~~~iP~----------l~v~~P~ 452 (621)
T 2o1s_A 399 A---YDQVLHDVA-I--QKLPVLFAIDRAGIVGADGQTHQGA--F--------DLSYLRCIPE----------MVIMTPS 452 (621)
T ss_dssp G---HHHHHHTTT-T--TTCCCEEEEESCBCCCTTCGGGCBC--S--------HHHHTTTSTT----------CEEECCS
T ss_pred H---HHHHHHHHH-h--cCCCEEEEEECCccCCCCCCccCch--H--------HHHHHhcCCC----------CEEEecC
Confidence 6 888876432 2 4689999999954 66 69999976 2 2234567775 9999999
Q ss_pred CHHHHHHHHHHHHhcCC-CCcEEEEccccccCCCCCCCCcccccccCCCCCCCCCCCceeEeecCCCCCCCCCCCccEEE
Q 002323 800 TPANYFHVLRRQIHRGF-RKPLIVISPKNLLRHKDCKSNLSEFDDVQGHPGFDKQGTRFKRLIKDQNGHSDLEEGIRRLV 878 (936)
Q Consensus 800 tpa~~fhlLrrq~~r~~-~~Pli~~~pK~Llr~~~~~S~l~ef~~~~~~~~~~~pg~~F~~vi~d~~~~~~~~~~v~rvi 878 (936)
||.+++++|+.+++ . ++|++|+.||..+... ..+.-.+| +-|.+..+.++ -+-+|
T Consensus 453 d~~e~~~~l~~a~~--~~~~Pv~i~~~r~~~~~~-~~~~~~~~-----------~~G~~~~~~~g----------~dv~i 508 (621)
T 2o1s_A 453 DENECRQMLYTGYH--YNDGPSAVRYPRGNAVGV-ELTPLEKL-----------PIGKGIVKRRG----------EKLAI 508 (621)
T ss_dssp SHHHHHHHHHHHHH--CCSSCEEEECCSSBCCCC-CCCCCCCC-----------CTTCCEEEECC----------SSEEE
T ss_pred CHHHHHHHHHHHHH--cCCCCEEEEeCCCCCCCC-CCCccccc-----------cCCceEEeecC----------CCEEE
Confidence 99999999999998 5 8999999999877421 11110222 22555544321 12499
Q ss_pred EeCchhHHHHHHh
Q 002323 879 LCSGKVFITSLMK 891 (936)
Q Consensus 879 lcsGkvyydL~~~ 891 (936)
+|+|..++..+++
T Consensus 509 va~G~~~~~a~~A 521 (621)
T 2o1s_A 509 LNFGTLMPEAAKV 521 (621)
T ss_dssp EEESTTHHHHHHH
T ss_pred EEecHHHHHHHHH
Confidence 9999999988877
No 10
>3mos_A Transketolase, TK; thiamin diphosphate TPP THDP enzyme catalysis sugar metaboli transferase; HET: TPP; 1.75A {Homo sapiens} PDB: 3ooy_A*
Probab=99.96 E-value=9e-29 Score=293.32 Aligned_cols=381 Identities=13% Similarity=0.191 Sum_probs=246.5
Q ss_pred ccCCCccccceeechhHHHHHhcCCCCCCceEEEEEecCcccCCCchHHHhhhcc---CCCCCccccEEEEEEeCCcccc
Q 002323 362 NPSHLEAVDPVVVGKTRAKQYYSHDVDRTKNMGVLIHGDGSFAGQGVVYETLHLS---ALPNYTTGGTIHIVVNNQVAFT 438 (936)
Q Consensus 362 NPSHLeav~PVa~G~ArA~q~~~~d~~~~~~v~v~~hGDgA~sGQGvv~EtLNlA---~LP~Y~~GGtIhIV~NNQigfT 438 (936)
+..|+|...|.|+|+|+|.++.+.+ +..++|++|||++. +|.++|+||+| +|| -+|+|+.||+|+++
T Consensus 119 ~~G~lG~gl~~A~G~AlA~~~~~~~----~~~vv~v~GDG~~~-eG~~~Eal~~A~~~~l~-----~livi~nnN~~~i~ 188 (616)
T 3mos_A 119 ATGSLGQGLGAACGMAYTGKYFDKA----SYRVYCLLGDGELS-EGSVWEAMAFASIYKLD-----NLVAILDINRLGQS 188 (616)
T ss_dssp CCCSTTCHHHHHHHHHHHHHHTSCC----SCCEEEEEETGGGG-SHHHHHHHHHHHHTTCT-----TEEEEEEECSBCSS
T ss_pred cccccCCccHHHHHHHHHHHHhCCC----CCEEEEEECccccc-cCcHHHHHHHHHHcCCC-----cEEEEEECCCCCCc
Confidence 4567999999999999999875442 26799999999999 99999999999 786 36778889999999
Q ss_pred cCCCCCCCcc-hhh---------------H--HHHHHHHHHHHHHHccCCCEEEEEEeeecCCCCCCCCCCCCCHHHHHH
Q 002323 439 TDPRAGRSSQ-YCT---------------D--AVVHVCELAAEWRQKFHSDVVVDLVCYRRFGHNEIDEPSFTQPKMYQV 500 (936)
Q Consensus 439 T~~~~~rss~-y~t---------------D--AV~~a~~~A~e~rr~f~~pvlIdlv~YRr~GHne~Ddp~ytqp~~y~~ 500 (936)
++.....+.. |.. | ++..|.+. ..++|+||++.|+|-.||+..+++. .
T Consensus 189 ~~~~~~~~~~~~~~~~~a~G~~~~~VdG~d~~~l~~al~~------~~~~P~lI~v~T~kg~G~~~~e~~~--------~ 254 (616)
T 3mos_A 189 DPAPLQHQMDIYQKRCEAFGWHAIIVDGHSVEELCKAFGQ------AKHQPTAIIAKTFKGRGITGVEDKE--------S 254 (616)
T ss_dssp SBCTTTTCHHHHHHHHHHTTCEEEEEETTCHHHHHHHHHS------CCSSCEEEEEECCTTTTSTTTTTCS--------S
T ss_pred CCcccccChHHHHHHHHHcCCeEEEEcCCCHHHHHHHHHh------cCCCCEEEEEEEecccccccccCch--------h
Confidence 8766544321 110 1 55555532 2589999999999999998776553 1
Q ss_pred HHcCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhhhcCCC--ccchhhhhccCCCCcccccccCCCCCCh
Q 002323 501 IRSHPSAFEIYQKKLLESAQVTQEDINRIQEKVNTILNEEFMASKDYVPK--RRDWLSAYWAGFKSPEQVSRIRNTGVKP 578 (936)
Q Consensus 501 i~~~~dpl~~y~~~Li~eGilt~eei~~i~~~~~~~l~~a~~~A~~~~p~--~~~~~~~~w~~~~~~~~~~~~~~Tgv~~ 578 (936)
| |..| +++++++++.+++++.+++. +...|. +.......|.....
T Consensus 255 ~--Hg~~-------------~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~-------------- 301 (616)
T 3mos_A 255 W--HGKP-------------LPKNMAEQIIQEIYSQIQSK----KKILATPPQEDAPSVDIANIRM-------------- 301 (616)
T ss_dssp C--TTCC-------------CCHHHHHHHHHHHHHTCCCC----CCCCCBCCCCCCCCCCCSCCCC--------------
T ss_pred h--cCCC-------------CCHHHHHHHHHHHHHHHHhh----hhhCcCccchhhhhhhhhcccc--------------
Confidence 2 2222 45566655554443322111 111111 00000000000000
Q ss_pred HHHHHHHHHhccCCCCCCchhHHHHHHHHHHHHHhcCCcccHHHHHHHHhhhhhhcCCcEEEecccCCCcccccccceee
Q 002323 579 EILKNVGKAITNLPENFKPHRGVKKVYEQRAQMIETGEGIDWAVGEALAFATLLVEGNHVRLSGQDVERGTFSHRHSVLH 658 (936)
Q Consensus 579 ~~l~~i~~~~~~~P~~f~~h~~l~r~l~~R~~~~~~~~~iDWa~aE~LAfgsLl~eg~~Vrl~GqDv~rGtF~~RHavl~ 658 (936)
.. |+.|+ .++.+..--|-..|...++.++.+|++.|+|+..|+|.
T Consensus 302 ----------~~-~~~~~-----------------~~~~~a~r~a~~~~L~~l~~~d~~vv~~~aD~~~~~~~------- 346 (616)
T 3mos_A 302 ----------PS-LPSYK-----------------VGDKIATRKAYGQALAKLGHASDRIIALDGDTKNSTFS------- 346 (616)
T ss_dssp ----------SS-CCCCC-----------------TTCBCCHHHHHHHHHHHHHHHCTTEEEEESSCHHHHSH-------
T ss_pred ----------CC-Ccccc-----------------cccchHHHHHHHHHHHHHHhhCCCEEEEeCCcCCCcch-------
Confidence 00 11121 01112222222333456788999999999999887763
Q ss_pred ecCCCceeecCCCCcccCCCcceEEEccCcchhHHHHHHhhhccCCCCcceeeeccchhhhhhHHHHHHHHHhhhhhhhc
Q 002323 659 DQETGEKYCPLDHVMMNQDEEMFTVSNSSLSEFGVLGFELGYSMENPNSLVLWEAQFGDFANGAQVIFDQFLSSGESKWL 738 (936)
Q Consensus 659 dq~t~~~y~pL~~l~~~~~~g~~rV~nspLSE~avlG~e~G~sl~g~~~LviwEaqFgDF~n~Aq~iidqfi~~~~~kw~ 738 (936)
..+. +.+ +.|++|++|||.+++|+++|+|+.|.+. ++++||++|+.-| +||++... .
T Consensus 347 -----------~~~~--~~~-p~R~~d~gIaE~~~v~~a~G~A~~G~~~--~~~~~f~~Fl~~a---~dqi~~~a--~-- 403 (616)
T 3mos_A 347 -----------EIFK--KEH-PDRFIECYIAEQNMVSIAVGCATRNRTV--PFCSTFAAFFTRA---FDQIRMAA--I-- 403 (616)
T ss_dssp -----------HHHH--HHC-GGGEEECCSCHHHHHHHHHHHHGGGCCE--EEEEEEGGGGGGG---HHHHHHHH--H--
T ss_pred -----------hhHH--HhC-CCCeEEcCccHHHHHHHHHHHHHcCCCC--EEEEehHHHHHHH---HHHHHHHH--H--
Confidence 3454 444 6799999999999999999999999754 8999999999877 67776543 2
Q ss_pred CccccEEEcCc-cC-CC-CCccccCchhhhhhhcCCCCCCcccCCCchhhhhccccceEEEEcCCHHHHHHHHHHHHhcC
Q 002323 739 RQTGLVVLLPH-GY-DG-QGPEHSSARLERFLQMSDDNPFVIPEMDPTLRKQIQECNWQIVNVTTPANYFHVLRRQIHRG 815 (936)
Q Consensus 739 ~~s~lv~~lPh-G~-~G-~GpeHSs~RiERfLQl~~~~~~~~~~~pg~~~~~~~~~N~~Vv~pstpa~~fhlLrrq~~r~ 815 (936)
...|+++...| |. .| .||.|.+- +|..+|.++|| |+|+.|+||.+++++++.++.
T Consensus 404 ~~~~v~~v~~~~g~~~G~dG~tH~~~----------ed~a~l~~iP~----------l~V~~P~d~~e~~~~l~~a~~-- 461 (616)
T 3mos_A 404 SESNINLCGSHCGVSIGEDGPSQMAL----------EDLAMFRSVPT----------STVFYPSDGVATEKAVELAAN-- 461 (616)
T ss_dssp TTCCEEEEEESBSGGGCTTCGGGCBS----------SHHHHHHTSTT----------EEEECCCSHHHHHHHHHHHHT--
T ss_pred hCCCeEEEEECCCccccCCCCcccCH----------HHHHHhcCCCC----------CEEEecCCHHHHHHHHHHHHh--
Confidence 24577777766 44 34 58988643 23346678885 999999999999999999987
Q ss_pred CCCcEEEEccccccCCCCCCCCcccccccCCCCCCCCCCCceeEeecCCCCCCCCCCCccEEEEeCchhHHHHHHhhcc-
Q 002323 816 FRKPLIVISPKNLLRHKDCKSNLSEFDDVQGHPGFDKQGTRFKRLIKDQNGHSDLEEGIRRLVLCSGKVFITSLMKGGR- 894 (936)
Q Consensus 816 ~~~Pli~~~pK~Llr~~~~~S~l~ef~~~~~~~~~~~pg~~F~~vi~d~~~~~~~~~~v~rvilcsGkvyydL~~~r~~- 894 (936)
.+.|+++..++.- .|....+-++|. -|+.. |+.+. ++.+-+|+|+|..++..+++.++
T Consensus 462 ~~gp~~ir~~r~~--~p~~~~~~~~~~-----------~Gka~-vl~eg-------~d~dv~iva~G~~v~~al~Aa~~L 520 (616)
T 3mos_A 462 TKGICFIRTSRPE--NAIIYNNNEDFQ-----------VGQAK-VVLKS-------KDDQVTVIGAGVTLHEALAAAELL 520 (616)
T ss_dssp CCSEEEEECCSSC--CBCCSCTTCCCC-----------TTCCE-EEECC-------SSEEEEEECCTHHHHHHHHHHHHH
T ss_pred cCCCEEEEEeCCC--CCccCCCccccc-----------CCeEE-EEEeC-------CCCCEEEEEeCHHHHHHHHHHHHH
Confidence 6799888766531 111111122222 24444 44332 23457999999999888776543
Q ss_pred --cCCcee
Q 002323 895 --SAVQVM 900 (936)
Q Consensus 895 --~~~~~~ 900 (936)
++++|-
T Consensus 521 ~~~Gi~v~ 528 (616)
T 3mos_A 521 KKEKINIR 528 (616)
T ss_dssp HTTTCEEE
T ss_pred HhcCCCEE
Confidence 455553
No 11
>2o1x_A 1-deoxy-D-xylulose-5-phosphate synthase; thiamin, isoprenoid, DXS, transferase; HET: TDP; 2.90A {Deinococcus radiodurans}
Probab=99.96 E-value=1.3e-28 Score=292.78 Aligned_cols=336 Identities=15% Similarity=0.172 Sum_probs=231.3
Q ss_pred ccCCCccccceeechhHHHHHhcCCCCCCceEEEEEecCcccCCCchHHHhhhcc---CCCCCccccEEEEEEeCCcccc
Q 002323 362 NPSHLEAVDPVVVGKTRAKQYYSHDVDRTKNMGVLIHGDGSFAGQGVVYETLHLS---ALPNYTTGGTIHIVVNNQVAFT 438 (936)
Q Consensus 362 NPSHLeav~PVa~G~ArA~q~~~~d~~~~~~v~v~~hGDgA~sGQGvv~EtLNlA---~LP~Y~~GGtIhIV~NNQigfT 438 (936)
..+|+|...|.|+|+|+|.++++.+ ..+||++|||++. +|.++|+||+| ++| +|+||.||+|+++
T Consensus 121 ~~G~~G~gl~~AvG~AlA~k~~~~~-----~~Vv~v~GDG~~~-~G~~~EaL~~A~~~~~p------li~IvnnN~~~i~ 188 (629)
T 2o1x_A 121 TVGHASTSLTNALGMALARDAQGKD-----FHVAAVIGDGSLT-GGMALAALNTIGDMGRK------MLIVLNDNEMSIS 188 (629)
T ss_dssp CCSSSSCHHHHHHHHHHHHHHHTCC-----CCEEEEEETTGGG-SHHHHHHHHHHHHHCCS------EEEEEEECSBSSS
T ss_pred CCCcccccHhHHHHHHHHHHHhCCC-----CeEEEEEchhhhh-ccHHHHHHHHHHhhCCC------EEEEEECCCCCCC
Confidence 3577999999999999999988765 7899999999998 99999999999 999 9999999999998
Q ss_pred cCCCCC----------------------------------------------------CCc----chh--hH-----HHH
Q 002323 439 TDPRAG----------------------------------------------------RSS----QYC--TD-----AVV 455 (936)
Q Consensus 439 T~~~~~----------------------------------------------------rss----~y~--tD-----AV~ 455 (936)
++...+ +.. .|. -| ++.
T Consensus 189 ~~~~~~~~~~~~l~~~~~y~~~~~~~~~~~~~~g~~~~~~~~~~~d~~~~~~~p~~~~~~ea~G~~~~g~vdG~d~~~l~ 268 (629)
T 2o1x_A 189 ENVGAMNKFMRGLQVQKWFQEGEGAGKKAVEAVSKPLADFMSRAKNSTRHFFDPASVNPFAAMGVRYVGPVDGHNVQELV 268 (629)
T ss_dssp BCCSSHHHHC---------------------------------------------CCCTTGGGTCEEEEEEESSCHHHHH
T ss_pred CChhHHHHHHHHHhhchhHHHHHHHHHHHHhccchHHHHHHHHHHHHHHhhcCcccchHHHhcCCeEEeeECCcCHHHHH
Confidence 765311 000 010 01 555
Q ss_pred HHHHHHHHHHHccCCCEEEEEEeeecCCCCC--CCCCCCCCHHHHHHHHcCCCHHHHHHHHHHHcCCCCHHHHHHHHHHH
Q 002323 456 HVCELAAEWRQKFHSDVVVDLVCYRRFGHNE--IDEPSFTQPKMYQVIRSHPSAFEIYQKKLLESAQVTQEDINRIQEKV 533 (936)
Q Consensus 456 ~a~~~A~e~rr~f~~pvlIdlv~YRr~GHne--~Ddp~ytqp~~y~~i~~~~dpl~~y~~~Li~eGilt~eei~~i~~~~ 533 (936)
.|.+. +++.++|+||++.|++-.||.. .+.. .|. .-+
T Consensus 269 ~al~~----A~~~~~P~lI~v~t~kg~G~~~~e~~~~---------~~H--~~~-------------------------- 307 (629)
T 2o1x_A 269 WLLER----LVDLDGPTILHIVTTKGKGLSYAEADPI---------YWH--GPA-------------------------- 307 (629)
T ss_dssp HHHHH----HTTSSSEEEEEEECCTTTTCHHHHHCTT---------GGG--SCC--------------------------
T ss_pred HHHHH----HHhcCCCEEEEEEEecCCCCChhHcCCc---------ccc--cCc--------------------------
Confidence 54444 4556899999999999999841 1100 111 110
Q ss_pred HHHHHHHHHHhhhcCCCccchhhhhccCCCCcccccccCCCCCChHHHHHHHHHhccCCCCCCchhHHHHHHHHHHHHHh
Q 002323 534 NTILNEEFMASKDYVPKRRDWLSAYWAGFKSPEQVSRIRNTGVKPEILKNVGKAITNLPENFKPHRGVKKVYEQRAQMIE 613 (936)
Q Consensus 534 ~~~l~~a~~~A~~~~p~~~~~~~~~w~~~~~~~~~~~~~~Tgv~~~~l~~i~~~~~~~P~~f~~h~~l~r~l~~R~~~~~ 613 (936)
+ +. .+|++. |.. . .+..++
T Consensus 308 --------------~-------------f~--------~~~~~~--------------~~~-~-~~~~~~---------- 326 (629)
T 2o1x_A 308 --------------K-------------FD--------PATGEY--------------VPS-S-AYSWSA---------- 326 (629)
T ss_dssp --------------S-------------BC--------TTTCCB--------------CCC-C-CCBHHH----------
T ss_pred --------------c-------------CC--------cCcCcc--------------ccc-c-hHHHHH----------
Confidence 0 00 011110 000 0 000111
Q ss_pred cCCcccHHHHHHHHhhhhhhcCCcEEEecccCCCcccccccceeeecCCCceeecCCCCcccCCCcceEEEccCcchhHH
Q 002323 614 TGEGIDWAVGEALAFATLLVEGNHVRLSGQDVERGTFSHRHSVLHDQETGEKYCPLDHVMMNQDEEMFTVSNSSLSEFGV 693 (936)
Q Consensus 614 ~~~~iDWa~aE~LAfgsLl~eg~~Vrl~GqDv~rGtF~~RHavl~dq~t~~~y~pL~~l~~~~~~g~~rV~nspLSE~av 693 (936)
++.++|. .++.++.+|.+.++|+..|+ + +.++. +++ +.|++|++|+|.++
T Consensus 327 -------~~~~~l~--~~~~~d~~v~~i~~d~~~~~-~-----------------~~~f~--~~~-~~r~~~~gIaE~~~ 376 (629)
T 2o1x_A 327 -------AFGEAVT--EWAKTDPRTFVVTPAMREGS-G-----------------LVEFS--RVH-PHRYLDVGIAEEVA 376 (629)
T ss_dssp -------HHHHHHH--HHHHHCTTEEEEESSCTTTT-T-----------------CHHHH--HHC-GGGEEECCSCHHHH
T ss_pred -------HHHHHHH--HHhhhCcCEEEEeccccCCc-C-----------------hHHHH--Hhc-CcceEeccccHHHH
Confidence 1112222 34557888999999996552 2 14566 556 78999999999999
Q ss_pred HHHHhhhccCCCCcceeeeccchhhhhhHHHHHHHHHhhhhhhhcCccccEEEcCccC-CC-CCccccCchhhhhhhcCC
Q 002323 694 LGFELGYSMENPNSLVLWEAQFGDFANGAQVIFDQFLSSGESKWLRQTGLVVLLPHGY-DG-QGPEHSSARLERFLQMSD 771 (936)
Q Consensus 694 lG~e~G~sl~g~~~LviwEaqFgDF~n~Aq~iidqfi~~~~~kw~~~s~lv~~lPhG~-~G-~GpeHSs~RiERfLQl~~ 771 (936)
+|++.|+|+.|.+| ++++ |.+|+.-| +||++.... + ...|+|++.+||. .| -||.||+.
T Consensus 377 ~~~a~G~A~~G~rp--~~~~-~~~F~~~a---~dqi~~~~a-~--~~~pvv~~~~~~g~~g~dG~tH~~~---------- 437 (629)
T 2o1x_A 377 VTTAAGMALQGMRP--VVAI-YSTFLQRA---YDQVLHDVA-I--EHLNVTFCIDRAGIVGADGATHNGV---------- 437 (629)
T ss_dssp HHHHHHHHHTTCEE--EEEE-EHHHHGGG---HHHHHHTTT-T--TTCCCEEEEESBBCCCTTCTTTCBC----------
T ss_pred HHHHHHHHHcCCEE--EEEe-cHHHHHHH---HHHHHHHHh-h--cCCCEEEEEECCccCCCCCcccCcc----------
Confidence 99999999999999 8888 99998766 778775332 2 3689999999865 55 59999986
Q ss_pred CCCCcccCCCchhhhhccccceEEEEcCCHHHHHHHHHHHHhcCCCCcEEEEccccccCCCCCCCCcccccccCCCCCCC
Q 002323 772 DNPFVIPEMDPTLRKQIQECNWQIVNVTTPANYFHVLRRQIHRGFRKPLIVISPKNLLRHKDCKSNLSEFDDVQGHPGFD 851 (936)
Q Consensus 772 ~~~~~~~~~pg~~~~~~~~~N~~Vv~pstpa~~fhlLrrq~~r~~~~Pli~~~pK~Llr~~~~~S~l~ef~~~~~~~~~~ 851 (936)
+|..++.++|| |+|+.|++|.+++++|+.+++ .+.|++|..||..+... +.++.. .
T Consensus 438 ~d~a~~r~iP~----------l~v~~P~d~~e~~~~~~~a~~--~~~Pv~i~~~r~~~~~~----~~~~~~--------~ 493 (629)
T 2o1x_A 438 FDLSFLRSIPG----------VRIGLPKDAAELRGMLKYAQT--HDGPFAIRYPRGNTAQV----PAGTWP--------D 493 (629)
T ss_dssp SHHHHTTTSTT----------CEEECCSSHHHHHHHHHHHHH--SSSCEEEECCSSBCCCC----CTTCCC--------C
T ss_pred HHHHHHHccCC----------cEEEecCCHHHHHHHHHHHHh--CCCCEEEEecCCCCCCC----cccccc--------c
Confidence 12245678886 999999999999999999998 58999999998766321 111111 1
Q ss_pred CCCCceeEeecCCCCCCCCCCCccEEEEeCchhHHHHHHhhcc
Q 002323 852 KQGTRFKRLIKDQNGHSDLEEGIRRLVLCSGKVFITSLMKGGR 894 (936)
Q Consensus 852 ~pg~~F~~vi~d~~~~~~~~~~v~rvilcsGkvyydL~~~r~~ 894 (936)
.|-|....+.++ -+-+|+++|-.+...+++.++
T Consensus 494 ~~~G~~~~~~~g----------~dv~iva~G~~v~~a~~Aa~~ 526 (629)
T 2o1x_A 494 LKWGEWERLKGG----------DDVVILAGGKALDYALKAAED 526 (629)
T ss_dssp CCTTCCEEEECC----------SSEEEEECHHHHHHHHHHHTT
T ss_pred ccCCceEEEeeC----------CCEEEEEecHHHHHHHHHHHH
Confidence 222443333221 135899999998877776654
No 12
>1gpu_A Transketolase; transferase(ketone residues); HET: THD; 1.86A {Saccharomyces cerevisiae} SCOP: c.36.1.6 c.36.1.10 c.48.1.1 PDB: 1ngs_A* 1trk_A* 1ay0_A* 1tkb_A* 1tka_A* 1tkc_A*
Probab=99.95 E-value=4.5e-28 Score=290.27 Aligned_cols=412 Identities=14% Similarity=0.127 Sum_probs=246.2
Q ss_pred ccccCCCccccceeechhHHHHHhcC-----CCCCCceEEEEEecCcccCCCchHHHhhhcc---CCCCCccccEEEEEE
Q 002323 360 VANPSHLEAVDPVVVGKTRAKQYYSH-----DVDRTKNMGVLIHGDGSFAGQGVVYETLHLS---ALPNYTTGGTIHIVV 431 (936)
Q Consensus 360 ~~NPSHLeav~PVa~G~ArA~q~~~~-----d~~~~~~v~v~~hGDgA~sGQGvv~EtLNlA---~LP~Y~~GGtIhIV~ 431 (936)
....+|+|...|.|+|+|+|.++.+. +..-.+..++|++|||++. +|.++|+||+| +|| =+|+||.
T Consensus 112 ~~~~G~lG~gl~~AvG~AlA~~~~~~~~n~~~~~~~~~~vv~i~GDG~~~-eG~~~Eal~~A~~~~L~-----~li~i~~ 185 (680)
T 1gpu_A 112 EVTTGPLGQGISNAVGMAMAQANLAATYNKPGFTLSDNYTYVFLGDGCLQ-EGISSEASSLAGHLKLG-----NLIAIYD 185 (680)
T ss_dssp CSCCCSTTHHHHHHHHHHHHHHHHHHHHCBTTBCCCCCCEEEEECHHHHH-SHHHHHHHHHHHHTTCT-----TEEEEEE
T ss_pred eeccccccchHHHHHHHHHHHHHhccccccCccCCCCCeEEEEECCCccc-hhhHHHHHHHHHHhCCC-----cEEEEEE
Confidence 34457799999999999999987641 0011247899999999999 99999999999 775 3899999
Q ss_pred eCCcccccCCCCCCCcchh----------------h-H--HHHHHHHHHHHHHHccCCCEEEEEEeeecCCCCCCCC---
Q 002323 432 NNQVAFTTDPRAGRSSQYC----------------T-D--AVVHVCELAAEWRQKFHSDVVVDLVCYRRFGHNEIDE--- 489 (936)
Q Consensus 432 NNQigfTT~~~~~rss~y~----------------t-D--AV~~a~~~A~e~rr~f~~pvlIdlv~YRr~GHne~Dd--- 489 (936)
||+|+++++...+.+..+. . | +++.|.+.|.+ ..++|+||++.|+|-+||++.|.
T Consensus 186 nN~~~i~~~~~~~~~~d~~~~~~a~G~~~~~~vdG~~d~~~l~~al~~A~~---~~~~P~lI~~~T~kg~G~~~~~~~~~ 262 (680)
T 1gpu_A 186 DNKITIDGATSISFDEDVAKRYEAYGWEVLYVENGNEDLAGIAKAIAQAKL---SKDKPTLIKMTTTIGYGSLHAGSHSV 262 (680)
T ss_dssp ECSEETTEEGGGTCCCCHHHHHHHHTCEEEEESCTTTCHHHHHHHHHHHHH---CTTSCEEEEEECCTTTTSTTTTSGGG
T ss_pred CCCceEecccccccCccHHHHHHhcCCeEEEEecCCCCHHHHHHHHHHHHH---CCCCCEEEEEEeecccccccCCCCcc
Confidence 9999999876533221111 1 3 66666666554 36899999999999999998876
Q ss_pred -CCCCCHHHHHHHHcCCCHHHHHHHHHHHcCCCCHHHHH-----------HHHHHHHHHHHHHHHHhhhcCCCccchhhh
Q 002323 490 -PSFTQPKMYQVIRSHPSAFEIYQKKLLESAQVTQEDIN-----------RIQEKVNTILNEEFMASKDYVPKRRDWLSA 557 (936)
Q Consensus 490 -p~ytqp~~y~~i~~~~dpl~~y~~~Li~eGilt~eei~-----------~i~~~~~~~l~~a~~~A~~~~p~~~~~~~~ 557 (936)
..|+.+++++.|++ ..+...+.... +.++..+ ..+.++.+.+.+.. +..|.....+..
T Consensus 263 H~~~~~~ee~~~~~~-~~~~~~~~~f~-----~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~----~~~p~~a~~~~~ 332 (680)
T 1gpu_A 263 HGAPLKADDVKQLKS-KFGFNPDKSFV-----VPQEVYDHYQKTILKPGVEANNKWNKLFSEYQ----KKFPELGAELAR 332 (680)
T ss_dssp SSSCCCHHHHHHHHH-HTTCCTTCCSC-----CCHHHHHHHHHHTHHHHHHHHHHHHHHHHHHH----HHCHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHH-HcCCCcCCCcc-----CCHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH----hhChHHHHHHHH
Confidence 35999999999874 22221111111 1111111 11112222221111 000100000000
Q ss_pred hccCCCCcccccccCCCCCChHHHHHHHHHhccCCCCCC-chhHHHHHHHHHHHHHhcCCcccHHHHHHHHhhhhhhcCC
Q 002323 558 YWAGFKSPEQVSRIRNTGVKPEILKNVGKAITNLPENFK-PHRGVKKVYEQRAQMIETGEGIDWAVGEALAFATLLVEGN 636 (936)
Q Consensus 558 ~w~~~~~~~~~~~~~~Tgv~~~~l~~i~~~~~~~P~~f~-~h~~l~r~l~~R~~~~~~~~~iDWa~aE~LAfgsLl~eg~ 636 (936)
...+. .|..+.. .+| .|. ..++ +.-|. ++.++ ...++....
T Consensus 333 ~~~~~-~p~~~~~-------------------~~~-~~~~~~~~----~a~r~-----------a~~~~--L~~~~~~~p 374 (680)
T 1gpu_A 333 RLSGQ-LPANWES-------------------KLP-TYTAKDSA----VATRK-----------LSETV--LEDVYNQLP 374 (680)
T ss_dssp HHTTC-CCTTGGG-------------------GSC-CCCTTSCC----BCHHH-----------HHHHH--HHHHTTTCT
T ss_pred Hhccc-CCchhhh-------------------hch-hhccCCcc----hHHHH-----------HHHHH--HHHHHhhCC
Confidence 00000 0000000 011 000 0000 00011 11122 234566788
Q ss_pred cEEEecccCCC--cccccccceeeecCCCceeecCCCCcccCCCcceEEEccCcchhHHHHHHhhhccCC-CC-cceeee
Q 002323 637 HVRLSGQDVER--GTFSHRHSVLHDQETGEKYCPLDHVMMNQDEEMFTVSNSSLSEFGVLGFELGYSMEN-PN-SLVLWE 712 (936)
Q Consensus 637 ~Vrl~GqDv~r--GtF~~RHavl~dq~t~~~y~pL~~l~~~~~~g~~rV~nspLSE~avlG~e~G~sl~g-~~-~LviwE 712 (936)
+|++.|+|+.. ++|.. .+ ..|..-.++. .++ +.|++|++|+|.+++|++.|+|+.| .+ | ++
T Consensus 375 ~v~~~~aDl~~s~~~~~~--------g~-~~f~~~~~~~--~~~-p~R~~d~gIaE~~~vg~a~GlA~~Gg~~~P--~~- 439 (680)
T 1gpu_A 375 ELIGGSADLTPSNLTRWK--------EA-LDFQPPSSGS--GNY-SGRYIRYGIREHAMGAIMNGISAFGANYKP--YG- 439 (680)
T ss_dssp TEEEEESSCHHHHTCSCT--------TC-CEECCTTTSS--EET-TCCEEECCSCHHHHHHHHHHHHHHCTTCEE--EE-
T ss_pred CEEEEecccccccccccc--------cc-cccccccccc--cCC-CCceecCCccHHHHHHHHHHHHhcCCCceE--EE-
Confidence 89999999975 44310 00 1111112222 255 7899999999999999999999998 78 8 55
Q ss_pred ccchhhhhhHHHHHHHHHhhhhhhhcCccccEEEcCcc-C-CC-CCccccCchhhhhhhcCCCCCCcccCCCchhhhhcc
Q 002323 713 AQFGDFANGAQVIFDQFLSSGESKWLRQTGLVVLLPHG-Y-DG-QGPEHSSARLERFLQMSDDNPFVIPEMDPTLRKQIQ 789 (936)
Q Consensus 713 aqFgDF~n~Aq~iidqfi~~~~~kw~~~s~lv~~lPhG-~-~G-~GpeHSs~RiERfLQl~~~~~~~~~~~pg~~~~~~~ 789 (936)
++|.+|+.-+|.+|-. . + ....|+|++++|+ . .| -||.| ++ .+|..+|.++||
T Consensus 440 ~~f~~F~~~~~~air~-~--a----~~~lpvv~v~t~~g~g~G~dG~tH-q~---------~edla~lr~iP~------- 495 (680)
T 1gpu_A 440 GTFLNFVSYAAGAVRL-S--A----LSGHPVIWVATHDSIGVGEDGPTH-QP---------IETLAHFRSLPN------- 495 (680)
T ss_dssp EEEHHHHGGGHHHHHH-H--H----HHTCCCEEEEECCSGGGCTTCTTT-CC---------SSHHHHHHTSSS-------
T ss_pred eehHHHHHHHHHHHHH-H--H----hcCCCEEEEEeCCccccCCCCCcc-CC---------HHHHHHhcCCCC-------
Confidence 4677776556555422 1 1 1257999998764 3 34 68999 55 344456778896
Q ss_pred ccceEEEEcCCHHHHHHHHHHHHhcCC-CCcEEEEccccccCCCCCCCCcccccccCCCCCCCCCCCceeEeecCCCCCC
Q 002323 790 ECNWQIVNVTTPANYFHVLRRQIHRGF-RKPLIVISPKNLLRHKDCKSNLSEFDDVQGHPGFDKQGTRFKRLIKDQNGHS 868 (936)
Q Consensus 790 ~~N~~Vv~pstpa~~fhlLrrq~~r~~-~~Pli~~~pK~Llr~~~~~S~l~ef~~~~~~~~~~~pg~~F~~vi~d~~~~~ 868 (936)
|+|+.|++|.+++++|+.++. . ++|++|..||.-+.. .+.++... .|-|. .|+.+.+
T Consensus 496 ---l~V~~Pad~~e~~~~l~~A~~--~~~~Pv~i~~~r~~~~~----~~~~~~~~--------~~~G~--~vl~~g~--- 553 (680)
T 1gpu_A 496 ---IQVWRPADGNEVSAAYKNSLE--SKHTPSIIALSRQNLPQ----LEGSSIES--------ASKGG--YVLQDVA--- 553 (680)
T ss_dssp ---CEEECCCSHHHHHHHHHHHHH--CSSCCEEEECCSSCBCC----CTTCCHHH--------HTTSC--EEEECCS---
T ss_pred ---CEEEecCCHHHHHHHHHHHHH--hCCCcEEEEecCCCCCC----CCCcchhh--------ccCCC--EEEecCC---
Confidence 999999999999999999998 5 799999999864421 11111110 12233 4555421
Q ss_pred CCCCCccEEEEeCchhHHHHHHhhc
Q 002323 869 DLEEGIRRLVLCSGKVFITSLMKGG 893 (936)
Q Consensus 869 ~~~~~v~rvilcsGkvyydL~~~r~ 893 (936)
. -+-+|+++|......+++.+
T Consensus 554 --~--~dvtiva~G~~v~~al~Aa~ 574 (680)
T 1gpu_A 554 --N--PDIILVATGSEVSLSVEAAK 574 (680)
T ss_dssp --S--CSEEEEECTHHHHHHHHHHH
T ss_pred --C--CCEEEEEEcHHHHHHHHHHH
Confidence 1 23589999998876665543
No 13
>2ozl_B PDHE1-B, pyruvate dehydrogenase E1 component subunit beta; pyruvate_dehydrogenase_complex, human, multienzyme_complex_component; HET: TPP; 1.90A {Homo sapiens} SCOP: c.36.1.7 c.48.1.2 PDB: 1ni4_B* 3exe_B* 3exf_B* 3exg_B 3exh_B* 3exi_B
Probab=99.95 E-value=6.8e-28 Score=267.26 Aligned_cols=213 Identities=16% Similarity=0.185 Sum_probs=170.0
Q ss_pred ccHHHHHHHHhhhhhhcCCcEEEecccCCCcccccccceeeecCCCceeecCCCCcccCCCcceEEEccCcchhHHHHHH
Q 002323 618 IDWAVGEALAFATLLVEGNHVRLSGQDVERGTFSHRHSVLHDQETGEKYCPLDHVMMNQDEEMFTVSNSSLSEFGVLGFE 697 (936)
Q Consensus 618 iDWa~aE~LAfgsLl~eg~~Vrl~GqDv~rGtF~~RHavl~dq~t~~~y~pL~~l~~~~~~g~~rV~nspLSE~avlG~e 697 (936)
.+|+++|+|. .|+.++.+|++.|+|+++ +|..|.+|+++. ++||+.|++|++|||.+++|++
T Consensus 17 ~~~a~~~~L~--~l~~~~~~vv~~~~D~~~--------------~g~~~~~~~~~~--~~~gp~r~~d~gIaE~~~v~~a 78 (341)
T 2ozl_B 17 VRDAINQGMD--EELERDEKVFLLGEEVAQ--------------YDGAYKVSRGLW--KKYGDKRIIDTPISEMGFAGIA 78 (341)
T ss_dssp HHHHHHHHHH--HHHHHCTTEEEEETTSST--------------TCCTTSTTTTHH--HHHCTTTEEECCSCHHHHHHHH
T ss_pred HHHHHHHHHH--HHHhhCCCEEEECCcccc--------------cCCcchhHHHHH--HHhCCCcEEECchhHHHHHHHH
Confidence 6899999994 999999999999999986 223344458888 7888999999999999999999
Q ss_pred hhhccCCCCcceeeeccchhhhhhHHHHHHHHHhhhhhhhc------CccccEEEcCccCCC-CCccccCchhhhhhhcC
Q 002323 698 LGYSMENPNSLVLWEAQFGDFANGAQVIFDQFLSSGESKWL------RQTGLVVLLPHGYDG-QGPEHSSARLERFLQMS 770 (936)
Q Consensus 698 ~G~sl~g~~~LviwEaqFgDF~n~Aq~iidqfi~~~~~kw~------~~s~lv~~lPhG~~G-~GpeHSs~RiERfLQl~ 770 (936)
+|+|+.|.+| +||+||++|+.- .+||++.+. +||+ .+.|+|+++|||+.| .||+||++ +|++|.
T Consensus 79 ~G~A~~G~rp--~~~~~f~~F~~~---a~dqi~~~~-a~~~y~~~g~~~~pvv~~~~~G~~g~~G~tHs~~-~ea~l~-- 149 (341)
T 2ozl_B 79 VGAAMAGLRP--ICEFMTFNFSMQ---AIDQVINSA-AKTYYMSGGLQPVPIVFRGPNGASAGVAAQHSQC-FAAWYG-- 149 (341)
T ss_dssp HHHHHTTCEE--EEECSSGGGGGG---GHHHHHTTT-TTHHHHTTSSCCCCCEEEEECSCCSSCCGGGCCC-CHHHHH--
T ss_pred HHHHHCCCEE--EEEeccHHHHHH---HHHHHHHHH-HHHHhhccccCCCCEEEEEcCcCCCCCCcchhhH-HHHHhc--
Confidence 9999999888 999999999954 499999766 7776 578999999999855 79999754 786543
Q ss_pred CCCCCcccCCCchhhhhccccceEEEEcCCHHHHHHHHHHHHhcCCCCcEEEEccccccCCCCCCCCcccccccCCCCCC
Q 002323 771 DDNPFVIPEMDPTLRKQIQECNWQIVNVTTPANYFHVLRRQIHRGFRKPLIVISPKNLLRHKDCKSNLSEFDDVQGHPGF 850 (936)
Q Consensus 771 ~~~~~~~~~~pg~~~~~~~~~N~~Vv~pstpa~~fhlLrrq~~r~~~~Pli~~~pK~Llr~~~~~S~l~ef~~~~~~~~~ 850 (936)
++| ||+|+.|+||++++++|+++++ .++|++|++||.+|+++..+++ ++.+ ..+
T Consensus 150 --------~iP----------~l~V~~Psd~~e~~~~l~~a~~--~~~Pv~i~~~~~~~~~~~~v~p--~~~~----~~~ 203 (341)
T 2ozl_B 150 --------HCP----------GLKVVSPWNSEDAKGLIKSAIR--DNNPVVVLENELMYGVPFEFPP--EAQS----KDF 203 (341)
T ss_dssp --------TST----------TCEEECCCSHHHHHHHHHHHHH--SSSCEEEEECHHHHTCEEECCH--HHHS----TTC
T ss_pred --------cCC----------CCEEEEeCCHHHHHHHHHHHHh--cCCCEEEEEChhhhcCCCCcCC--ccCC----ccc
Confidence 556 4999999999999999999998 6899999999999988765532 1111 001
Q ss_pred CCCCCceeEeecCCCCCCCCCCCccEEEEeCchhHHHHHHhhc
Q 002323 851 DKQGTRFKRLIKDQNGHSDLEEGIRRLVLCSGKVFITSLMKGG 893 (936)
Q Consensus 851 ~~pg~~F~~vi~d~~~~~~~~~~v~rvilcsGkvyydL~~~r~ 893 (936)
..+-|+++.+ .+ ..+.+|+|+|..++.++++++
T Consensus 204 ~~~~Gk~~v~-~~---------g~dv~iia~Gs~~~~a~~Aa~ 236 (341)
T 2ozl_B 204 LIPIGKAKIE-RQ---------GTHITVVSHSRPVGHCLEAAA 236 (341)
T ss_dssp CCCTTCCEEE-EC---------CSSEEEEECSTHHHHHHHHHH
T ss_pred cccCCceEEe-cc---------CCCEEEEEeCHHHHHHHHHHH
Confidence 1222444433 22 134699999999999988775
No 14
>2e6k_A Transketolase; structural genomics, NPPSFA, national project protein structural and functional analyses; 2.09A {Thermus thermophilus}
Probab=99.94 E-value=1.3e-26 Score=276.61 Aligned_cols=406 Identities=15% Similarity=0.168 Sum_probs=250.2
Q ss_pred ccccCCCccccceeechhHHHHHhc-----CCCCCCceEEEEEecCcccCCCchHHHhhhcc---CCCCCccccEEEEEE
Q 002323 360 VANPSHLEAVDPVVVGKTRAKQYYS-----HDVDRTKNMGVLIHGDGSFAGQGVVYETLHLS---ALPNYTTGGTIHIVV 431 (936)
Q Consensus 360 ~~NPSHLeav~PVa~G~ArA~q~~~-----~d~~~~~~v~v~~hGDgA~sGQGvv~EtLNlA---~LP~Y~~GGtIhIV~ 431 (936)
....+|+|...|.|+|+|+|.++.+ .+.+..+..++|+.|||++. +|.++|+||+| +|| =+|+||.
T Consensus 114 ~~~~G~lG~gl~~AvG~A~A~~~~~~~~~~~~~~~~~~~v~~~~GDG~~~-eG~~~Eal~~A~~~~L~-----~li~i~~ 187 (651)
T 2e6k_A 114 EVTTGPLGQGISTAVGLALAERKLAAEFNRPGHVVVDHYTYVLASDGDLM-EGVSGEAASLAGHWGLS-----KLIVFWD 187 (651)
T ss_dssp CSCCCSTTHHHHHHHHHHHHHHHHHHHHCBTTBCCCCCCEEEEECHHHHH-SHHHHHHHHHHHHTTCT-----TEEEEEE
T ss_pred eeccccccchHHHHHHHHHHHHhhcccccccccCCCCCEEEEEEChhhhc-hhHHHHHHHHHHHcCCC-----eEEEEEE
Confidence 3446779999999999999998764 11111237899999999998 99999999999 776 3899999
Q ss_pred eCCcccccCCCCCCCcchh-------------h---H--HHHHHHHHHHHHHHccCCCEEEEEEeeecCCCCCCCCCCC-
Q 002323 432 NNQVAFTTDPRAGRSSQYC-------------T---D--AVVHVCELAAEWRQKFHSDVVVDLVCYRRFGHNEIDEPSF- 492 (936)
Q Consensus 432 NNQigfTT~~~~~rss~y~-------------t---D--AV~~a~~~A~e~rr~f~~pvlIdlv~YRr~GHne~Ddp~y- 492 (936)
||+|+++++........+. . | +++.|.+.|.+ .++|+||++.|+|-+||++.|...|
T Consensus 188 nN~~~i~~~~~~~~~~d~~~~~~a~G~~~~~~vdG~d~~~l~~al~~a~~----~~~P~lI~~~t~kg~G~~~~~~~~~H 263 (651)
T 2e6k_A 188 DNRISIDGPTDLAFTEDVLARYRAYGWQTLRVEDVNDLEALRKAIKLAKL----DERPTLIAVRSHIGFGSPKQDSAKAH 263 (651)
T ss_dssp ECCEETTEEGGGTCCSCHHHHHHHTTCEEEEESCTTCHHHHHHHHHHHHH----SSSCEEEEEECCTTTTSTTTTSGGGT
T ss_pred CCCcccccccccccCccHHHHHHhCCCeEEEEeCCCCHHHHHHHHHHHHH----CCCCEEEEEEeEeccccccccccccc
Confidence 9999999875543322111 1 2 77777766654 6899999999999999996565555
Q ss_pred ---CCHHHHHHHHcCCCHHHHHHHHHHHcCCCCHHHHH---------HHHHHHHHHHHHHHHHhhhcCCCccchhhhhcc
Q 002323 493 ---TQPKMYQVIRSHPSAFEIYQKKLLESAQVTQEDIN---------RIQEKVNTILNEEFMASKDYVPKRRDWLSAYWA 560 (936)
Q Consensus 493 ---tqp~~y~~i~~~~dpl~~y~~~Li~eGilt~eei~---------~i~~~~~~~l~~a~~~A~~~~p~~~~~~~~~w~ 560 (936)
+.+++++.+++ .+|+. +...+ +.++..+ ..++++++.+.+... ..|.....+.....
T Consensus 264 ~~~~~~~e~~~~~~-~~~~~-~~~f~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~p~~~~~~~~~~~ 332 (651)
T 2e6k_A 264 GEPLGPEAVEATRR-NLGWP-YPPFV-----VPEEVYRHMDMREKGRAWQEAWEKALEAYAR----AYPDLHQELMRRLR 332 (651)
T ss_dssp SSCCHHHHHHHHHH-HHTCC-CCTTC-----CCHHHHHHHCCHHHHHHHHHHHHHHHHHHHH----HCHHHHHHHHHHHT
T ss_pred ccCCCHHHHHHHHH-HcCCC-ccccc-----CChHHHHHHHHhhhchhhHHHHHHHHHHhhh----hChHHHHHHHHHhc
Confidence 56778888874 33332 11111 1222111 112222222222111 00100000000000
Q ss_pred CCCCcccccccCCCCCChHHHHHHHHHhccCCCCCCchhHHHHHHHHHHHHHhcCCcccHHHHHHHHhhhhhhcCCcEEE
Q 002323 561 GFKSPEQVSRIRNTGVKPEILKNVGKAITNLPENFKPHRGVKKVYEQRAQMIETGEGIDWAVGEALAFATLLVEGNHVRL 640 (936)
Q Consensus 561 ~~~~~~~~~~~~~Tgv~~~~l~~i~~~~~~~P~~f~~h~~l~r~l~~R~~~~~~~~~iDWa~aE~LAfgsLl~eg~~Vrl 640 (936)
. ..|. +.. .+|. |. ++ +..|. ++.++ ...++....+|++
T Consensus 333 ~-~~p~-~~~-------------------~~~~-~~--~~----~~~r~-----------a~~~~--L~~~~~~~p~~~~ 371 (651)
T 2e6k_A 333 G-ELPP-LPE-------------------EPPS-FD--KP----IATRA-----------ASGRA--LNLLAPRLPELLG 371 (651)
T ss_dssp T-CCCC-CCC-------------------SCCC-CC--SC----BCHHH-----------HHHHH--HHHHGGGCTTEEE
T ss_pred C-cCCc-hhh-------------------hccc-cC--cc----HHHHH-----------HHHHH--HHHHHhhCCCEEE
Confidence 0 0000 000 0000 00 00 00111 11222 2245667788999
Q ss_pred ecccCCC--cccccccceeeecCCCceeecCCCCcccC-CCcceEEEccCcchhHHHHHHhhhccCC-CCcceeee--cc
Q 002323 641 SGQDVER--GTFSHRHSVLHDQETGEKYCPLDHVMMNQ-DEEMFTVSNSSLSEFGVLGFELGYSMEN-PNSLVLWE--AQ 714 (936)
Q Consensus 641 ~GqDv~r--GtF~~RHavl~dq~t~~~y~pL~~l~~~~-~~g~~rV~nspLSE~avlG~e~G~sl~g-~~~LviwE--aq 714 (936)
.|+|+.. +++.. -+.++. + ++ +.|++|++|+|.+++|++.|+|+.| .+| +++ +|
T Consensus 372 ~~aDl~~s~~~~~~---------------~~~~f~--~~~~-p~R~i~~gIaE~~~~~~a~GlA~~Gg~~P--~~~t~~~ 431 (651)
T 2e6k_A 372 GSADLTPSNNTKAE---------------GMEDFS--RANP-LGRYLHFGVREHAMGAILNGLNLHGGYRA--YGGTFLV 431 (651)
T ss_dssp EESSCHHHHTCSCT---------------TCCBCB--TTBT-TCCEEECCSCHHHHHHHHHHHHHHSSCEE--EEEEEGG
T ss_pred EeCccccccccccc---------------cccccC--ccCC-CCceEecCcCHHHHHHHHHHHHHcCCCEE--EEEeHHH
Confidence 9999964 33320 125566 5 55 8899999999999999999999998 899 777 99
Q ss_pred chhhhhhHHHHHHHHHhhhhhhhcCccccEEEc-CccC-CC-CCccccCchhhhhhhcCCCCCCcccCCCchhhhhcccc
Q 002323 715 FGDFANGAQVIFDQFLSSGESKWLRQTGLVVLL-PHGY-DG-QGPEHSSARLERFLQMSDDNPFVIPEMDPTLRKQIQEC 791 (936)
Q Consensus 715 FgDF~n~Aq~iidqfi~~~~~kw~~~s~lv~~l-PhG~-~G-~GpeHSs~RiERfLQl~~~~~~~~~~~pg~~~~~~~~~ 791 (936)
|.||+..| | ... + . .+.|+|+++ +.|. .| -||.| |+ +| |..++.++||
T Consensus 432 F~~~~~~a---i-r~~--a--~--~~lpvv~~~t~~g~g~G~dG~tH-q~-~e--------dla~lr~iP~--------- 482 (651)
T 2e6k_A 432 FSDYMRPA---I-RLA--A--L--MGVPTVFVFTHDSIALGEDGPTH-QP-VE--------HLMSLRAMPN--------- 482 (651)
T ss_dssp GGGGSHHH---H-HHH--H--H--HTCCCEEEEECCSGGGCTTCTTT-CC-SS--------HHHHHHTSTT---------
T ss_pred HHHHHHHH---H-HHH--H--h--cCCCEEEEEECCccccCCCcCcc-cc-HH--------HHHHhcCCCC---------
Confidence 99998766 2 111 1 1 257899985 5554 34 69999 66 33 3345667885
Q ss_pred ceEEEEcCCHHHHHHHHHHHHhcCCCCcEEEEccccccCCCCCCCCcccccccCCCCCCCCCCCceeEeecCCCCCCCCC
Q 002323 792 NWQIVNVTTPANYFHVLRRQIHRGFRKPLIVISPKNLLRHKDCKSNLSEFDDVQGHPGFDKQGTRFKRLIKDQNGHSDLE 871 (936)
Q Consensus 792 N~~Vv~pstpa~~fhlLrrq~~r~~~~Pli~~~pK~Llr~~~~~S~l~ef~~~~~~~~~~~pg~~F~~vi~d~~~~~~~~ 871 (936)
|+|+.|+++.+++++|+.+++. .+.|++|..||..+.. -+.++... .+.|. .|+.+.+
T Consensus 483 -l~V~~Pad~~E~~~~l~~A~~~-~~~Pv~i~~~r~~~~~----~~~~~~~~--------~~~G~--~vl~~g~------ 540 (651)
T 2e6k_A 483 -LFVIRPADAYETFYAWLVALRR-KEGPTALVLTRQAVPL----LSPEKARG--------LLRGG--YVLEDVE------ 540 (651)
T ss_dssp -CEEECCSSHHHHHHHHHHHHHC-CSSCEEEECCSSCBCC----CCHHHHGG--------GGGSS--EEEECCS------
T ss_pred -cEEEecCCHHHHHHHHHHHHHc-CCCCEEEEEeCCCCCC----CCcchhhh--------hcCCC--EEEeeCC------
Confidence 9999999999999999999982 2689999999876521 11111111 12233 3554421
Q ss_pred CCccEEEEeCchhHHHHHHhhc---ccCCce
Q 002323 872 EGIRRLVLCSGKVFITSLMKGG---RSAVQV 899 (936)
Q Consensus 872 ~~v~rvilcsGkvyydL~~~r~---~~~~~~ 899 (936)
+-+-+|+++|-.....+++.+ +++++|
T Consensus 541 -~~dv~iva~G~~v~~al~Aa~~L~~~Gi~~ 570 (651)
T 2e6k_A 541 -EPQGVLVATGSEVHLALRAQALLREKGVRV 570 (651)
T ss_dssp -SCSEEEEECTTHHHHHHHHHHHHHHTTCCE
T ss_pred -CCCEEEEEECHHHHHHHHHHHHHHhcCCcE
Confidence 123599999998876665543 345554
No 15
>2bfd_B 2-oxoisovalerate dehydrogenase beta subunit; oxidoreductase, multi-enzyme complex, acylation, oxidative decarboxylation, maple syrup urine disease; HET: TDP; 1.39A {Homo sapiens} SCOP: c.36.1.7 c.48.1.2 PDB: 1dtw_B* 1olu_B* 1ols_B* 1v11_B* 1v16_B* 1v1m_B* 1u5b_B* 1wci_B* 1v1r_B* 1x7x_B* 1x7w_B* 1x7z_B* 1x80_B* 2beu_B* 2bev_B* 2bew_B* 2bfb_B* 2bfc_B* 1x7y_B* 2bfe_B* ...
Probab=99.94 E-value=3.1e-27 Score=261.98 Aligned_cols=216 Identities=21% Similarity=0.276 Sum_probs=174.8
Q ss_pred CCcccHHHHHHHHhhhhhhcCCcEEEecccCCC-cccccccceeeecCCCceeecCCCCcccCCCcceEEEccCcchhHH
Q 002323 615 GEGIDWAVGEALAFATLLVEGNHVRLSGQDVER-GTFSHRHSVLHDQETGEKYCPLDHVMMNQDEEMFTVSNSSLSEFGV 693 (936)
Q Consensus 615 ~~~iDWa~aE~LAfgsLl~eg~~Vrl~GqDv~r-GtF~~RHavl~dq~t~~~y~pL~~l~~~~~~g~~rV~nspLSE~av 693 (936)
+..++|..|...|+..|+.++.+|++.|+|+++ |||+. + +++. +++|+.|++|++|||.++
T Consensus 18 ~~~~~~~~a~~~aL~~l~~~~~~vv~~~~D~~~~gt~~~---------~-------~~~~--~~~gp~r~~~~gIaE~~~ 79 (342)
T 2bfd_B 18 TQKMNLFQSVTSALDNSLAKDPTAVIFGEDVAFGGVFRC---------T-------VGLR--DKYGKDRVFNTPLCEQGI 79 (342)
T ss_dssp EEEECHHHHHHHHHHHHHHHCTTCEEEETTTTTTCTTST---------T-------TTHH--HHHCTTTEEECCSCHHHH
T ss_pred cCCccHHHHHHHHHHHHHhcCCCEEEEcCccCCCcccch---------H-------HHHH--HHhCCCeEEEcCcCHHHH
Confidence 345899999999999999999999999999987 78865 5 7888 778899999999999999
Q ss_pred HHHHhhhccCCCCcceeeeccchhhhhhHHHHHHHHHhhh-hhhhc--C--cc-ccEEEcCccCCCCCccccCchhhhhh
Q 002323 694 LGFELGYSMENPNSLVLWEAQFGDFANGAQVIFDQFLSSG-ESKWL--R--QT-GLVVLLPHGYDGQGPEHSSARLERFL 767 (936)
Q Consensus 694 lG~e~G~sl~g~~~LviwEaqFgDF~n~Aq~iidqfi~~~-~~kw~--~--~s-~lv~~lPhG~~G~GpeHSs~RiERfL 767 (936)
+|+++|+|+.|.+| +||+||++|+.-| +||+++.. ..+|. . .+ |+|+++|||+.+.||.|++.+.++||
T Consensus 80 v~~a~G~A~~G~rp--~~~~tf~~F~~~a---~dqi~~~~a~~~~~~~g~~~~~pvv~~~~~~g~~~G~th~~~~d~~~l 154 (342)
T 2bfd_B 80 VGFGIGIAVTGATA--IAEIQFADYIFPA---FDQIVNEAAKYRYRSGDLFNCGSLTIRSPWGCVGHGALYHSQSPEAFF 154 (342)
T ss_dssp HHHHHHHHHTTCCE--EEECSSGGGCGGG---HHHHHTTGGGHHHHTTTSSCCTTEEEEEEESCCSSCGGGSSCCCHHHH
T ss_pred HHHHHHHHHCCCee--EEEecchhHHHHH---HHHHHHHHHHHHhhhcCCccCCCEEEEEecCCCCCCcchhhHhHHHHH
Confidence 99999999999988 9999999998655 89988544 34442 2 33 99999999987889999999888887
Q ss_pred hcCCCCCCcccCCCchhhhhccccceEEEEcCCHHHHHHHHHHHHhcCCCCcEEEEccccccCCCCCCCCcccccccCCC
Q 002323 768 QMSDDNPFVIPEMDPTLRKQIQECNWQIVNVTTPANYFHVLRRQIHRGFRKPLIVISPKNLLRHKDCKSNLSEFDDVQGH 847 (936)
Q Consensus 768 Ql~~~~~~~~~~~pg~~~~~~~~~N~~Vv~pstpa~~fhlLrrq~~r~~~~Pli~~~pK~Llr~~~~~S~l~ef~~~~~~ 847 (936)
. ++| ||+|+.|+||++++++|+.+++ .++|++|++||.|+|.+....+.+++.
T Consensus 155 ~----------~iP----------~l~V~~Psd~~e~~~~l~~a~~--~~~Pv~i~~p~~l~r~~~~~~~~~~~~----- 207 (342)
T 2bfd_B 155 A----------HCP----------GIKVVIPRSPFQAKGLLLSCIE--DKNPCIFFEPKILYRAAAEEVPIEPYN----- 207 (342)
T ss_dssp H----------TST----------TCEEECCSSHHHHHHHHHHHHH--SSSCEEEEEEGGGTTSCCEEEESSCCC-----
T ss_pred h----------cCC----------CcEEEeeCCHHHHHHHHHHHHh--cCCcEEEEecchhcCCCCCCCCCcccc-----
Confidence 5 456 4999999999999999999998 689999999999998754332222221
Q ss_pred CCCCCCCCceeEeecCCCCCCCCCCCccEEEEeCchhHHHHHHhhcc
Q 002323 848 PGFDKQGTRFKRLIKDQNGHSDLEEGIRRLVLCSGKVFITSLMKGGR 894 (936)
Q Consensus 848 ~~~~~pg~~F~~vi~d~~~~~~~~~~v~rvilcsGkvyydL~~~r~~ 894 (936)
.+-|.++. +.+ ..+.+|+|+|..++..++++++
T Consensus 208 ----~~~G~~~v-~~~---------g~dv~iia~G~~~~~a~~Aa~~ 240 (342)
T 2bfd_B 208 ----IPLSQAEV-IQE---------GSDVTLVAWGTQVHVIREVASM 240 (342)
T ss_dssp ----CCSSCCEE-EEC---------CSSEEEEECTTHHHHHHHHHHH
T ss_pred ----eeCCceEE-ecc---------CCCEEEEEECHHHHHHHHHHHH
Confidence 12233332 222 1346999999999999887754
No 16
>1qs0_B 2-oxoisovalerate dehydrogenase beta-subunit; heterotetramer, THDP cofactor, oxidoreductase; HET: TDP; 2.40A {Pseudomonas putida} SCOP: c.36.1.7 c.48.1.2 PDB: 2bp7_B
Probab=99.94 E-value=5e-27 Score=259.52 Aligned_cols=231 Identities=20% Similarity=0.232 Sum_probs=179.2
Q ss_pred ccHHHHHHHHhhhhhhcCCcEEEecccCCC--cccccccceeeecCCCceeecCCCCcccCCCcceEEEccCcchhHHHH
Q 002323 618 IDWAVGEALAFATLLVEGNHVRLSGQDVER--GTFSHRHSVLHDQETGEKYCPLDHVMMNQDEEMFTVSNSSLSEFGVLG 695 (936)
Q Consensus 618 iDWa~aE~LAfgsLl~eg~~Vrl~GqDv~r--GtF~~RHavl~dq~t~~~y~pL~~l~~~~~~g~~rV~nspLSE~avlG 695 (936)
++|..+...|+..|+.++.+|++.|+|+++ |||+ +++++. +++|+.|++|++|||.+++|
T Consensus 5 ~~~~~a~~~~l~~l~~~~~~vv~~~~D~~~~~g~~~----------------~~~~~~--~~~gp~r~~~~gisE~~~~~ 66 (338)
T 1qs0_B 5 MTMIQALRSAMDVMLERDDNVVVYGQDVGYFGGVFR----------------CTEGLQ--TKYGKSRVFDAPISESGIVG 66 (338)
T ss_dssp CCHHHHHHHHHHHHHHHCTTEEEEETTCSSSCCTTS----------------TTTTHH--HHHCTTTEEECCSCHHHHHH
T ss_pred chHHHHHHHHHHHHHhhCCCEEEECCcccccCCcch----------------hHHHHH--HHhCCCcEEEccccHHHHHH
Confidence 678889999999999999999999999985 5554 458888 78889999999999999999
Q ss_pred HHhhhccCCCCcceeeeccchhhhhhHHHHHHHHHhhh-hhhhc----CccccEEEcCccCCCCCccccCchhhhhhhcC
Q 002323 696 FELGYSMENPNSLVLWEAQFGDFANGAQVIFDQFLSSG-ESKWL----RQTGLVVLLPHGYDGQGPEHSSARLERFLQMS 770 (936)
Q Consensus 696 ~e~G~sl~g~~~LviwEaqFgDF~n~Aq~iidqfi~~~-~~kw~----~~s~lv~~lPhG~~G~GpeHSs~RiERfLQl~ 770 (936)
+++|+|+.|.+| +||+||++|++-| +||+++.. ..+|. .++|+|+++|||+.+.||.|++.+.++||+
T Consensus 67 ~a~G~A~~G~rp--~~~~t~~~F~~~a---~dqi~~~~a~~~~~~~~~~~~pvv~~~~~~g~~~G~th~s~~d~~~l~-- 139 (338)
T 1qs0_B 67 TAVGMGAYGLRP--VVEIQFADYFYPA---SDQIVSEMARLRYRSAGEFIAPLTLRMPCGGGIYGGQTHSQSPEAMFT-- 139 (338)
T ss_dssp HHHHHHHHTCEE--EEECSCGGGCGGG---HHHHHTTTTTHHHHTTTSSCCCCEEEEEECCSSSCCSSSSCCCHHHHT--
T ss_pred HHHHHHhCCCEE--EEEeccHhHHHHH---HHHHHHHHHHHhhhcCCCCCCCEEEEEeCCCCCCCcccccccHHHHHh--
Confidence 999999999888 9999999998544 99988643 45564 368999999999988899999998888887
Q ss_pred CCCCCcccCCCchhhhhccccceEEEEcCCHHHHHHHHHHHHhcCCCCcEEEEccccccCCCCC---CCCcccccccCCC
Q 002323 771 DDNPFVIPEMDPTLRKQIQECNWQIVNVTTPANYFHVLRRQIHRGFRKPLIVISPKNLLRHKDC---KSNLSEFDDVQGH 847 (936)
Q Consensus 771 ~~~~~~~~~~pg~~~~~~~~~N~~Vv~pstpa~~fhlLrrq~~r~~~~Pli~~~pK~Llr~~~~---~S~l~ef~~~~~~ 847 (936)
++| ||+|+.|+||.+++++|+.+++ .++|++|++||.|+|.+.. .++++++.. +
T Consensus 140 --------~iP----------~l~V~~Psd~~e~~~~l~~A~~--~~~Pv~i~~p~~l~r~~~~~~~~~~~~~~~~---~ 196 (338)
T 1qs0_B 140 --------QVC----------GLRTVMPSNPYDAKGLLIASIE--CDDPVIFLEPKRLYNGPFDGHHDRPVTPWSK---H 196 (338)
T ss_dssp --------TST----------TCEEECCCSHHHHHHHHHHHHH--SSSCEEEEEEGGGSSSCCCSCSSSCCCCSTT---S
T ss_pred --------cCC----------CCEEEeeCCHHHHHHHHHHHHh--cCCcEEEEEchHhhcCcccccccCccchhhc---c
Confidence 345 4999999999999999999998 6899999999999998655 444443331 0
Q ss_pred CCCCCCCCceeEeecCCCCCCCCCCCccEEEEeCchhHHHHHHhhcccCCce
Q 002323 848 PGFDKQGTRFKRLIKDQNGHSDLEEGIRRLVLCSGKVFITSLMKGGRSAVQV 899 (936)
Q Consensus 848 ~~~~~pg~~F~~vi~d~~~~~~~~~~v~rvilcsGkvyydL~~~r~~~~~~~ 899 (936)
+....|.+.|...++.... -.+..+.+|+|+|..++..+++.++++++|
T Consensus 197 ~~~~~~~~~~~~~~gk~~~---~~~g~dv~iva~G~~~~~a~~Aa~~~Gi~v 245 (338)
T 1qs0_B 197 PHSAVPDGYYTVPLDKAAI---TRPGNDVSVLTYGTTVYVAQVAAEESGVDA 245 (338)
T ss_dssp TTCEEESSCCCCCTTCCCE---EECCSSCEEEECTTHHHHHHHHHHHHCCCC
T ss_pred cccccCCCCcccccCceeE---ecCCCCEEEEEeCHHHHHHHHHHHHcCCCE
Confidence 0001112223322222110 012345699999999999988877654443
No 17
>1ik6_A Pyruvate dehydrogenase; E1BETA, tetramer, GXXXG, oxidoreductase; 2.00A {Pyrobaculum aerophilum} SCOP: c.36.1.7 c.48.1.2
Probab=99.94 E-value=5.7e-27 Score=262.47 Aligned_cols=216 Identities=21% Similarity=0.246 Sum_probs=155.7
Q ss_pred ccHHHHHHHHhhhhhhcCCcEEEecccCCCcccccccceeeecCCCceeecCCCCcccCCCcceEEEccCcchhHHHHHH
Q 002323 618 IDWAVGEALAFATLLVEGNHVRLSGQDVERGTFSHRHSVLHDQETGEKYCPLDHVMMNQDEEMFTVSNSSLSEFGVLGFE 697 (936)
Q Consensus 618 iDWa~aE~LAfgsLl~eg~~Vrl~GqDv~rGtF~~RHavl~dq~t~~~y~pL~~l~~~~~~g~~rV~nspLSE~avlG~e 697 (936)
++|..+...|+..|+.++.+|++.|+|+++ ++..|.+++++. +++|+.|++|++|||.+++|++
T Consensus 51 ~~~~~a~~~aL~~l~~~d~~vv~~~~D~~~--------------~~g~~~~~~~~~--~~~gp~r~~d~gIaE~~~v~~a 114 (369)
T 1ik6_A 51 ANMAKAINMALHEEMERDERVVVLGEDVGK--------------KGGVFLVTEGLY--ERFGPERVIDTPLNEGGILGFA 114 (369)
T ss_dssp ECHHHHHHHHHHHHHHHCTTEEEEEC-----------------------CTTTTHH--HHHCTTTEEECCSCHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHccCCCEEEECCcccc--------------cCCcchhHHHHH--HHhCCCcEEECcccHHHHHHHH
Confidence 678888888999999999999999999986 223344458888 7888999999999999999999
Q ss_pred hhhccCCCCcceeeeccchhhhhhHHHHHHHHHhhh-hhhhc----CccccEEEcCccCCCCCccccCchhhhhhhcCCC
Q 002323 698 LGYSMENPNSLVLWEAQFGDFANGAQVIFDQFLSSG-ESKWL----RQTGLVVLLPHGYDGQGPEHSSARLERFLQMSDD 772 (936)
Q Consensus 698 ~G~sl~g~~~LviwEaqFgDF~n~Aq~iidqfi~~~-~~kw~----~~s~lv~~lPhG~~G~GpeHSs~RiERfLQl~~~ 772 (936)
+|+|+.|.+| +||+||++|+. ..+||++.+. ..||. .++|+|+++|||+.++|+.|+|.+.|+||+
T Consensus 115 ~G~A~~G~rp--v~~~tf~~Fl~---~a~Dqi~~~~a~~~~~~~g~~~~pvv~~~~~gg~~g~g~~hs~~~~a~l~---- 185 (369)
T 1ik6_A 115 MGMAMAGLKP--VAEIQFVDFIW---LGADELLNHIAKLRYRSGGNYKAPLVVRTPVGSGTRGGLYHSNSPEAIFV---- 185 (369)
T ss_dssp HHHHHTTCEE--EEECCCC-------CCHHHHHHHHHHHHC------CCCCEEEEEECC-----------HHHHHH----
T ss_pred HHHHHCCCee--EEEecchhHHH---HHHHHHHHHHHHHHHhhCCCCCCCEEEEEeCCCCCCCCccccccHHHHHc----
Confidence 9999999888 99999999985 5599998753 45675 378999999999854466666676888876
Q ss_pred CCCcccCCCchhhhhccccceEEEEcCCHHHHHHHHHHHHhcCCCCcEEEEccccccCCCCCCCCcccccccCCCCCCCC
Q 002323 773 NPFVIPEMDPTLRKQIQECNWQIVNVTTPANYFHVLRRQIHRGFRKPLIVISPKNLLRHKDCKSNLSEFDDVQGHPGFDK 852 (936)
Q Consensus 773 ~~~~~~~~pg~~~~~~~~~N~~Vv~pstpa~~fhlLrrq~~r~~~~Pli~~~pK~Llr~~~~~S~l~ef~~~~~~~~~~~ 852 (936)
++| ||+|+.|+||++++++|+++++ +++|++|++||.|+|.+...-+-+++. .
T Consensus 186 ------~iP----------nl~V~~Psd~~e~~~ll~~A~~--~~~Pv~i~~p~~l~r~~~~~v~~~~~~---------~ 238 (369)
T 1ik6_A 186 ------HTP----------GLVVVMPSTPYNAKGLLKAAIR--GDDPVVFLEPKILYRAPREEVPEGDYV---------V 238 (369)
T ss_dssp ------TCT----------TCEEECCCSHHHHHHHHHHHHH--SSSCEEEEEEGGGSSCCCEEEECSSCC---------C
T ss_pred ------CCC----------CcEEEecCCHHHHHHHHHHHHh--CCCCEEEEEehhhhccCCCCcCCCccc---------c
Confidence 455 5999999999999999999998 889999999999998742111111221 2
Q ss_pred CCCceeEeecCCCCCCCCCCCccEEEEeCchhHHHHHHhhccc
Q 002323 853 QGTRFKRLIKDQNGHSDLEEGIRRLVLCSGKVFITSLMKGGRS 895 (936)
Q Consensus 853 pg~~F~~vi~d~~~~~~~~~~v~rvilcsGkvyydL~~~r~~~ 895 (936)
|-|.++.+.++ .+.+|+|+|..++..++++++-
T Consensus 239 ~~G~~~v~~~g----------~dv~Iia~G~~v~~a~~Aa~~L 271 (369)
T 1ik6_A 239 EIGKARVAREG----------DDVTLVTYGAVVHKALEAAERV 271 (369)
T ss_dssp CTTCCEEEECC----------SSEEEEECTTHHHHHHHHHHTS
T ss_pred cCCceEEEEcC----------CCEEEEEeCHHHHHHHHHHHHh
Confidence 23555544321 2469999999999999887754
No 18
>3rim_A Transketolase, TK; TPP, transferase; HET: TPP; 2.49A {Mycobacterium tuberculosis}
Probab=99.94 E-value=2.6e-25 Score=266.24 Aligned_cols=409 Identities=13% Similarity=0.111 Sum_probs=245.9
Q ss_pred ccCCCccccceeechhHHHHHhc----CCC----CCCceEEEEEecCcccCCCchHHHhhhcc---CCCCCccccEEEEE
Q 002323 362 NPSHLEAVDPVVVGKTRAKQYYS----HDV----DRTKNMGVLIHGDGSFAGQGVVYETLHLS---ALPNYTTGGTIHIV 430 (936)
Q Consensus 362 NPSHLeav~PVa~G~ArA~q~~~----~d~----~~~~~v~v~~hGDgA~sGQGvv~EtLNlA---~LP~Y~~GGtIhIV 430 (936)
...|||...|.|+|+|+|.++.. .+. +..+..++|++|||++. +|++||+||+| +|| -+|+||
T Consensus 131 ~tG~lG~gl~~AvG~AlA~k~~~~~~~~~~~~~~~~~~~~v~~~~GDG~l~-eG~~~EAl~~A~~~~L~-----nli~i~ 204 (700)
T 3rim_A 131 TTGPLGQGLASAVGMAMASRYERGLFDPDAEPGASPFDHYIYVIASDGDIE-EGVTSEASSLAAVQQLG-----NLIVFY 204 (700)
T ss_dssp CCCSTTHHHHHHHHHHHHHHHHHHHHCTTSCTTCSTTCCCEEEEEEHHHHH-SHHHHHHHHHHHHTTCT-----TEEEEE
T ss_pred cccccCCcchHHHHHHHHHHHHhhhccccccccccCCCCeEEEEECCcccc-cChHHHHHHHHHHcCCC-----cEEEEE
Confidence 34679999999999999999852 100 12357899999999999 99999999999 884 299999
Q ss_pred EeCCcccccCCCCCCCcchh------------h-H-----HHHHHHHHHHHHHHccCCCEEEEEEeeecCCCCCCCCC--
Q 002323 431 VNNQVAFTTDPRAGRSSQYC------------T-D-----AVVHVCELAAEWRQKFHSDVVVDLVCYRRFGHNEIDEP-- 490 (936)
Q Consensus 431 ~NNQigfTT~~~~~rss~y~------------t-D-----AV~~a~~~A~e~rr~f~~pvlIdlv~YRr~GHne~Ddp-- 490 (936)
.||+|+++++...+....+. - | +++.|.+.|.+ ..++|+||++.|||-+||....+.
T Consensus 205 d~N~~si~~~~~~~~~~~~~~~~~a~G~~~~~V~DG~D~~al~~Al~~A~~---~~~~P~lI~~~T~kG~G~~~~e~~~~ 281 (700)
T 3rim_A 205 DRNQISIEDDTNIALCEDTAARYRAYGWHVQEVEGGENVVGIEEAIANAQA---VTDRPSFIALRTVIGYPAPNLMDTGK 281 (700)
T ss_dssp EECSEETTEEGGGTCCCCHHHHHHHHTCEEEEEECTTCHHHHHHHHHHHHH---CCSSCEEEEEECCTTTTCTTTTTSHH
T ss_pred ECCCcccccchhhccchhHHHHHHHcCCeEEEECCCCCHHHHHHHHHHHHH---cCCCCEEEEEEEEeeecCCccCCCcc
Confidence 99999999987654322211 1 2 77777766643 478999999999999999854332
Q ss_pred ---CCCCHHHHHHHHcC----C--------CHHHHHHHHHHHcCCCCHHHHHHHHHHHHH---HHHHHHHHhhhcCCCcc
Q 002323 491 ---SFTQPKMYQVIRSH----P--------SAFEIYQKKLLESAQVTQEDINRIQEKVNT---ILNEEFMASKDYVPKRR 552 (936)
Q Consensus 491 ---~ytqp~~y~~i~~~----~--------dpl~~y~~~Li~eGilt~eei~~i~~~~~~---~l~~a~~~A~~~~p~~~ 552 (936)
.--.+++++..++. + +++..|++ ..++|...+++.++.-+++++ ++.++++...+.+ .+.
T Consensus 282 ~Hg~~~~~e~~~~~~~~l~~~~~~~f~v~~~v~~~~~~-~~~~g~~~~~~w~~~~~~~~~~~p~~~~~~~~~~~~~-~p~ 359 (700)
T 3rim_A 282 AHGAALGDDEVAAVKKIVGFDPDKTFQVREDVLTHTRG-LVARGKQAHERWQLEFDAWARREPERKALLDRLLAQK-LPD 359 (700)
T ss_dssp HHHSCCCHHHHHHHHHHHTCCTTCSSCCCHHHHHHHTH-HHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHTTC-CCT
T ss_pred ccCCCCCHHHHHHHHHHcCCCcccCccCCHHHHHHHHH-HHhhhhHHHHHHHHHHHHHHhhChHHHHHHHHHhccC-CCc
Confidence 12345566554321 0 22333333 223331111111111111111 0111111111100 000
Q ss_pred chhhhhccCCCCcccccccCCCC-CChHHHHHHHHHhccCCCCCCchhHHHHHHHHHHHHHhcCCcccHHHHHHHHhhhh
Q 002323 553 DWLSAYWAGFKSPEQVSRIRNTG-VKPEILKNVGKAITNLPENFKPHRGVKKVYEQRAQMIETGEGIDWAVGEALAFATL 631 (936)
Q Consensus 553 ~~~~~~w~~~~~~~~~~~~~~Tg-v~~~~l~~i~~~~~~~P~~f~~h~~l~r~l~~R~~~~~~~~~iDWa~aE~LAfgsL 631 (936)
.|... .|. ...+ -...+.+ ++.++| ..+
T Consensus 360 -----~~~~~-~p~-----~~~~~~~~atr~--------------------------------------a~~~~L--~~l 388 (700)
T 3rim_A 360 -----GWDAD-LPH-----WEPGSKALATRA--------------------------------------ASGAVL--SAL 388 (700)
T ss_dssp -----TTTSS-CCC-----CCTTSSCEEHHH--------------------------------------HHHHHH--HHH
T ss_pred -----chhhh-ccc-----ccccccchHHHH--------------------------------------HHHHHH--HHH
Confidence 11110 000 0000 0000111 122222 245
Q ss_pred hhcCCcEEEecccCCC--ccc-ccccceeeecCCCceeecCCCCcccCCC-----cc----eEEEccCcchhHHHHHHhh
Q 002323 632 LVEGNHVRLSGQDVER--GTF-SHRHSVLHDQETGEKYCPLDHVMMNQDE-----EM----FTVSNSSLSEFGVLGFELG 699 (936)
Q Consensus 632 l~eg~~Vrl~GqDv~r--GtF-~~RHavl~dq~t~~~y~pL~~l~~~~~~-----g~----~rV~nspLSE~avlG~e~G 699 (936)
+.+..+|.+.++|+.. ||| +. + ..+. +++ |+ .|++|++|+|.+++|++.|
T Consensus 389 ~~~~p~vv~~saDl~~s~~t~~~~---------~-------~~f~--~~~~~~~~~p~~~~~R~id~GIaE~~mv~~A~G 450 (700)
T 3rim_A 389 GPKLPELWGGSADLAGSNNTTIKG---------A-------DSFG--PPSISTKEYTAHWYGRTLHFGVREHAMGAILSG 450 (700)
T ss_dssp TTTCTTEEEEESSCHHHHTCSCTT---------C-------CEES--CGGGCCSSCCEETTCCEEECCSCHHHHHHHHHH
T ss_pred HhhCCCEEEEeCCccCCCCccccc---------c-------hhhc--ccccccccCCcccCCceeecCccHHHHHHHHHH
Confidence 6788899999999975 443 21 2 4444 444 34 5999999999999999999
Q ss_pred hccC-CCCcceeee--ccchhhhhhHHHHHHHHHhhhhhhhcCccccEEEcCccC--CC-CCccccCchhhhhhhcCCCC
Q 002323 700 YSME-NPNSLVLWE--AQFGDFANGAQVIFDQFLSSGESKWLRQTGLVVLLPHGY--DG-QGPEHSSARLERFLQMSDDN 773 (936)
Q Consensus 700 ~sl~-g~~~LviwE--aqFgDF~n~Aq~iidqfi~~~~~kw~~~s~lv~~lPhG~--~G-~GpeHSs~RiERfLQl~~~~ 773 (936)
+|+. |.+| +++ ++|.||...+ |-. + + ....|++++++|.. .| -||.| ++ .+|
T Consensus 451 lA~~gG~~P--v~~tF~~F~d~~~~~---ir~-~--a----l~~lpvv~v~thdg~gvG~dG~TH-q~---------ied 508 (700)
T 3rim_A 451 IVLHGPTRA--YGGTFLQFSDYMRPA---VRL-A--A----LMDIDTIYVWTHDSIGLGEDGPTH-QP---------IEH 508 (700)
T ss_dssp HHHHSSCEE--EEEEEGGGGGGGHHH---HHH-H--H----HHTCCCEEEEECCSGGGCTTCTTT-SC---------SSH
T ss_pred HHHcCCCEE--EEEecHHHHHHHHHH---HHH-h--c----CCCCCEEEEEeCCCcccCCCCCcc-CC---------hhH
Confidence 9999 8999 777 6777776543 221 1 1 12579999987643 34 59999 44 344
Q ss_pred CCcccCCCchhhhhccccceEEEEcCCHHHHHHHHHHHHhcCCC---CcEEEEccccccCCCCCCCCcccccccCCCCCC
Q 002323 774 PFVIPEMDPTLRKQIQECNWQIVNVTTPANYFHVLRRQIHRGFR---KPLIVISPKNLLRHKDCKSNLSEFDDVQGHPGF 850 (936)
Q Consensus 774 ~~~~~~~pg~~~~~~~~~N~~Vv~pstpa~~fhlLrrq~~r~~~---~Pli~~~pK~Llr~~~~~S~l~ef~~~~~~~~~ 850 (936)
..+|.++|| |+|+.|++|.++.++|+.++. .+ .|++|..|+.-+-.-.. .+...+..
T Consensus 509 ~a~lr~iPn----------l~V~~Pad~~e~~~~l~~Ai~--~~~~~~Pv~ir~~r~~~~~~~~-~~~~~~~~------- 568 (700)
T 3rim_A 509 LSALRAIPR----------LSVVRPADANETAYAWRTILA--RRNGSGPVGLILTRQGVPVLDG-TDAEGVAR------- 568 (700)
T ss_dssp HHHHHTSTT----------CEEECCSSHHHHHHHHHHHHT--TTTCSSCEEEECCSSEECCCTT-CCHHHHHH-------
T ss_pred HHHHhcCCC----------CEEEeCCCHHHHHHHHHHHHH--ccCCCCCEEEEeccccCCCcCc-ccccccCC-------
Confidence 567788996 999999999999999999998 44 49999998765421100 11122322
Q ss_pred CCCCCceeEeecCCCCCCCCCCCccEEEEeCchhHHHHHHhhc---ccCCce
Q 002323 851 DKQGTRFKRLIKDQNGHSDLEEGIRRLVLCSGKVFITSLMKGG---RSAVQV 899 (936)
Q Consensus 851 ~~pg~~F~~vi~d~~~~~~~~~~v~rvilcsGkvyydL~~~r~---~~~~~~ 899 (936)
|. .|+.+.... ....+-+-+|+++|-.....+++.+ +.++++
T Consensus 569 ----G~--~vlr~g~~~-~~~~~~dvtiia~G~~v~~al~Aa~~L~~~Gi~~ 613 (700)
T 3rim_A 569 ----GG--YVLSDAGGL-QPGEEPDVILIATGSEVQLAVAAQTLLADNDILA 613 (700)
T ss_dssp ----SC--EEEECCSCC-CTTCCCSEEEEECGGGHHHHHHHHHHHHTTTCCE
T ss_pred ----Cc--EEEecCCcc-ccCCCCCEEEEEechHHHHHHHHHHHHHhcCCCe
Confidence 43 366654200 0011224689999998776655543 344444
No 19
>1r9j_A Transketolase; domains, EACH of the alpha/beta type, thiamine diphosphate binding domain, transferase; HET: TPP; 2.22A {Leishmania mexicana mexicana} SCOP: c.36.1.6 c.36.1.10 c.48.1.1
Probab=99.94 E-value=3.8e-25 Score=264.71 Aligned_cols=409 Identities=13% Similarity=0.107 Sum_probs=240.7
Q ss_pred ccCCCccccceeechhHHHHHhc-----CCCCCCceEEEEEecCcccCCCchHHHhhhcc---CCCCCccccEEEEEEeC
Q 002323 362 NPSHLEAVDPVVVGKTRAKQYYS-----HDVDRTKNMGVLIHGDGSFAGQGVVYETLHLS---ALPNYTTGGTIHIVVNN 433 (936)
Q Consensus 362 NPSHLeav~PVa~G~ArA~q~~~-----~d~~~~~~v~v~~hGDgA~sGQGvv~EtLNlA---~LP~Y~~GGtIhIV~NN 433 (936)
...|||...|.|+|+|+|.++.+ .+.+-.+..++|+.|||++. +|+++|+||+| +|| =+|+||.||
T Consensus 114 ~tG~lG~gl~~AvG~AlA~~~~~~~~n~~g~~~~d~~v~~~~GDG~~~-eG~~~Eal~~A~~~~L~-----~li~i~d~N 187 (673)
T 1r9j_A 114 TTGPLGQGIANAVGLAIAEAHLAATFNRPGYNIVDHYTYVYCGDGCLM-EGVCQEALSLAGHLALE-----KLIVIYDSN 187 (673)
T ss_dssp CCCSTTHHHHHHHHHHHHHHHHHHHHCBTTBCCCCCCEEEEECHHHHH-SHHHHHHHHHHHHHTCT-----TEEEEEEEC
T ss_pred ccCCCCCcHHHHHHHHHHHHHhhhhccccccCCCCCEEEEEECcchhc-ccHHHHHHHHHHHhCCC-----cEEEEEECC
Confidence 34669999999999999998764 11111247899999999999 99999999999 885 389999999
Q ss_pred CcccccCCCCCCCcch--------------h---hH--HHHHHHHHHHHHHHccCCCEEEEEEeeecCCCCCCCCC----
Q 002323 434 QVAFTTDPRAGRSSQY--------------C---TD--AVVHVCELAAEWRQKFHSDVVVDLVCYRRFGHNEIDEP---- 490 (936)
Q Consensus 434 QigfTT~~~~~rss~y--------------~---tD--AV~~a~~~A~e~rr~f~~pvlIdlv~YRr~GHne~Ddp---- 490 (936)
+|+++++...+....+ + .| +++.|.+.|.+ ..++|+||++.|+|-+||...|..
T Consensus 188 ~~~i~~~~~~~~~~d~~~~~~a~G~~~~~~vdG~~d~~~l~~Al~~A~~---~~~~P~lI~~~T~kg~G~~~~~~~~~H~ 264 (673)
T 1r9j_A 188 YISIDGSTSLSFTEQCHQKYVAMGFHVIEVKNGDTDYEGLRKALAEAKA---TKGKPKMIVQTTTIGFGSSKQGTEKVHG 264 (673)
T ss_dssp SBCSSSBGGGTCCCCHHHHHHHTTCEEEEESCTTTCHHHHHHHHHHHHH---CCSSCEEEEEECCTTTTSTTTTSGGGTS
T ss_pred CCccccchhhccCHhHHHHHHHCCCeEEEEeCCCCCHHHHHHHHHHHHH---cCCCCEEEEEecccccccccCCCccccc
Confidence 9999987654432111 1 23 66666666643 378999999999999999865553
Q ss_pred CCCCHHHHHHHHcCCCHHHHHHHHHHHcCCCCHHHHHHHHH------HHHHHHHHHHHHhhhcCCCccchhhhhccCCCC
Q 002323 491 SFTQPKMYQVIRSHPSAFEIYQKKLLESAQVTQEDINRIQE------KVNTILNEEFMASKDYVPKRRDWLSAYWAGFKS 564 (936)
Q Consensus 491 ~ytqp~~y~~i~~~~dpl~~y~~~Li~eGilt~eei~~i~~------~~~~~l~~a~~~A~~~~p~~~~~~~~~w~~~~~ 564 (936)
.+..+++++.+++.-. ...+. .=.+.++..+.++. ..++..++.++..+...|.....+.....+ ..
T Consensus 265 ~~~~~ee~~~~~~~~~-~~~~~-----~f~~p~~~~~~~~~~~~~g~~~~~~w~~~~~~~~~~~P~~~~~~~~~~~~-~~ 337 (673)
T 1r9j_A 265 APLGEEDIANIKAKFG-RDPQK-----KYDVDDDVRAVFRMHIDKCSAEQKAWEELLAKYTAAFPAEGAAFVAQMRG-EL 337 (673)
T ss_dssp SCCCHHHHHHHHHHTT-SCSSC-----CSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHTT-CC
T ss_pred CCCCHHHHHHHHHhcC-CCCcc-----cccCCHHHHHHHHHHHhhchHHHHHHHHHHHHHHhhChhHHHHHHHHhcC-CC
Confidence 3577888887764210 00000 00112222221111 000111111111111111110001100000 00
Q ss_pred cccccccCCCCCChHHHHHHHHHhccCCCCCCchhHHHHHHHHHHHHHhcCCcccHHHHHHHHhhhhhhcCCcEEEeccc
Q 002323 565 PEQVSRIRNTGVKPEILKNVGKAITNLPENFKPHRGVKKVYEQRAQMIETGEGIDWAVGEALAFATLLVEGNHVRLSGQD 644 (936)
Q Consensus 565 ~~~~~~~~~Tgv~~~~l~~i~~~~~~~P~~f~~h~~l~r~l~~R~~~~~~~~~iDWa~aE~LAfgsLl~eg~~Vrl~GqD 644 (936)
|..+.. .+|. | .+.+..|. ++.+ +...++.+..+|++.|+|
T Consensus 338 p~~~~~-------------------~~p~-~------~~~~a~r~-----------a~~~--~L~~l~~~~p~vv~~~aD 378 (673)
T 1r9j_A 338 PSGWEA-------------------KLPT-N------SSAIATRK-----------ASEN--CLAVLFPAIPALMGGSAD 378 (673)
T ss_dssp CTTTGG-------------------GSCC-C------CSCEEHHH-----------HHHH--HHHHHHHHCTTEEEEESS
T ss_pred Cchhhh-------------------hccc-c------ccchHHHH-----------HHHH--HHHHHHhhCCCEEEEecc
Confidence 000000 0110 0 00000111 1111 223456677889999999
Q ss_pred CCC--cccccccceeeecCCCceeecCCCCcccC-CCcceEEEccCcchhHHHHHHhhhccC-CCCcceeeeccchhhhh
Q 002323 645 VER--GTFSHRHSVLHDQETGEKYCPLDHVMMNQ-DEEMFTVSNSSLSEFGVLGFELGYSME-NPNSLVLWEAQFGDFAN 720 (936)
Q Consensus 645 v~r--GtF~~RHavl~dq~t~~~y~pL~~l~~~~-~~g~~rV~nspLSE~avlG~e~G~sl~-g~~~LviwEaqFgDF~n 720 (936)
+.. |++.. ++.| ..+. + ++ +.|++|++|+|.+++|++.|+|+. |.+| +++. |..|+.
T Consensus 379 l~~s~~~~~~------~~~~-------~~f~--~~~~-~~R~id~GIaE~~~~~~a~GlA~~GG~~P--~~~~-~~~F~~ 439 (673)
T 1r9j_A 379 LTPSNLTRPA------SANL-------VDFS--SSSK-EGRYIRFGVREHAMCAILNGLDAHDGIIP--FGGT-FLNFIG 439 (673)
T ss_dssp CHHHHTCSCG------GGCC-------CBCB--TTBT-TCCEEECCSCHHHHHHHHHHHHHHSSCEE--EEEE-EGGGGG
T ss_pred cccccccccc------Cccc-------cccc--ccCC-CCCeEecCccHHHHHHHHHHHHhcCCCEE--EEEe-hHHHHH
Confidence 975 44421 0012 3455 4 55 789999999999999999999999 5899 6665 444443
Q ss_pred hHHHHHHHHHhhhhhhhcCccccEEEcCc-cC-CC-CCccccCchhhhhhhcCCCCCCcccCCCchhhhhccccceEEEE
Q 002323 721 GAQVIFDQFLSSGESKWLRQTGLVVLLPH-GY-DG-QGPEHSSARLERFLQMSDDNPFVIPEMDPTLRKQIQECNWQIVN 797 (936)
Q Consensus 721 ~Aq~iidqfi~~~~~kw~~~s~lv~~lPh-G~-~G-~GpeHSs~RiERfLQl~~~~~~~~~~~pg~~~~~~~~~N~~Vv~ 797 (936)
-++.+|-. .+ ....|+|+++.| |. .| -||.| |+ + ++..++.++|| |+|+.
T Consensus 440 ~~~~~ir~---~a----~~~~pvv~~~t~~g~g~G~dG~tH-q~-~--------edla~lr~iP~----------l~V~~ 492 (673)
T 1r9j_A 440 YALGAVRL---AA----ISHHRVIYVATHDSIGVGEDGPTH-QP-V--------ELVAALRAMPN----------LQVIR 492 (673)
T ss_dssp GGHHHHHH---HH----HHTCCCEEEEECCSGGGCTTCTTT-CC-S--------SHHHHHHHSTT----------CEEEC
T ss_pred HHHHHHHH---HH----hcCCCEEEEEECCccCcCCCCccc-CC-H--------HHHHHHcCCCC----------CEEEe
Confidence 33333322 22 125789999865 33 34 68999 55 3 33356678885 99999
Q ss_pred cCCHHHHHHHHHHHHhcCCCCcEEEEccccccCCCCCCCCcccccccCCCCCCCCCCCceeEeecCCCCCCCCCCCccEE
Q 002323 798 VTTPANYFHVLRRQIHRGFRKPLIVISPKNLLRHKDCKSNLSEFDDVQGHPGFDKQGTRFKRLIKDQNGHSDLEEGIRRL 877 (936)
Q Consensus 798 pstpa~~fhlLrrq~~r~~~~Pli~~~pK~Llr~~~~~S~l~ef~~~~~~~~~~~pg~~F~~vi~d~~~~~~~~~~v~rv 877 (936)
|+++.++.++|+.++.. .+.|++|..||.-+-.-. ....+.+. -|. .|+.+.. . -+-+
T Consensus 493 Pad~~e~~~~l~~a~~~-~~~Pv~i~~~r~~~~~~~-~~~~~~~~-----------~Ga--~vl~~g~-----~--~dv~ 550 (673)
T 1r9j_A 493 PSDQTETSGAWAVALSS-IHTPTVLCLSRQNTEPQS-GSSIEGVR-----------HGA--YSVVDVP-----D--LQLV 550 (673)
T ss_dssp CSSHHHHHHHHHHHHHC-TTCCEEEECCSSEECCCT-TCCHHHHH-----------TSC--EEEECCT-----T--CSEE
T ss_pred CCCHHHHHHHHHHHHHh-CCCeEEEEEcCCCCCCCC-Cccccccc-----------CCC--EEEeeCC-----C--CCEE
Confidence 99999999999999982 278999999986442100 01111122 132 3555421 1 2358
Q ss_pred EEeCchhHHHHHHhhc
Q 002323 878 VLCSGKVFITSLMKGG 893 (936)
Q Consensus 878 ilcsGkvyydL~~~r~ 893 (936)
|+++|-.....+++.+
T Consensus 551 lia~G~~v~~al~Aa~ 566 (673)
T 1r9j_A 551 IVASGSEVSLAVDAAK 566 (673)
T ss_dssp EEECGGGHHHHHHHHH
T ss_pred EEEechhHHHHHHHHH
Confidence 9999998877666554
No 20
>2r8o_A Transketolase 1, TK 1; reaction intermediate, calcium, metal-binding, thiamine pyrophosphate, transferase; HET: T5X; 1.47A {Escherichia coli K12} SCOP: c.36.1.6 c.36.1.10 c.48.1.1 PDB: 2r5n_A* 2r8p_A* 1qgd_A*
Probab=99.93 E-value=2.3e-25 Score=266.48 Aligned_cols=415 Identities=14% Similarity=0.125 Sum_probs=250.3
Q ss_pred cccCCCccccceeechhHHHHHhcC-----CCCCCceEEEEEecCcccCCCchHHHhhhcc---CCCCCccccEEEEEEe
Q 002323 361 ANPSHLEAVDPVVVGKTRAKQYYSH-----DVDRTKNMGVLIHGDGSFAGQGVVYETLHLS---ALPNYTTGGTIHIVVN 432 (936)
Q Consensus 361 ~NPSHLeav~PVa~G~ArA~q~~~~-----d~~~~~~v~v~~hGDgA~sGQGvv~EtLNlA---~LP~Y~~GGtIhIV~N 432 (936)
...+|+|...|.|+|+|+|.++.+. +.+..+..++|+.|||++. +|.++|+||+| +|| =+|+||.|
T Consensus 111 ~~~G~lG~gl~~AvG~AlA~~~~~~~~n~~~~~~~~~~v~~~~GDG~~~-eG~~~Eal~~A~~~~L~-----~li~i~~n 184 (669)
T 2r8o_A 111 TTTGPLGQGIANAVGMAIAEKTLAAQFNRPGHDIVDHYTYAFMGDGCMM-EGISHEVCSLAGTLKLG-----KLIAFYDD 184 (669)
T ss_dssp SCCCSTTHHHHHHHHHHHHHHHHHHHHCBTTBCCCCCCEEEEECHHHHH-SHHHHHHHHHHHHTTCT-----TEEEEEEE
T ss_pred cccccccchHHHHHHHHHHHHHhccccccCccCCcCCeEEEEECHhHhc-chHHHHHHHHHHHcCCC-----cEEEEEEC
Confidence 3456799999999999999986641 1111236899999999999 99999999999 776 48999999
Q ss_pred CCcccccCCCCCCCcchh-------------h---H--HHHHHHHHHHHHHHccCCCEEEEEEeeecCCCCC-CCCC---
Q 002323 433 NQVAFTTDPRAGRSSQYC-------------T---D--AVVHVCELAAEWRQKFHSDVVVDLVCYRRFGHNE-IDEP--- 490 (936)
Q Consensus 433 NQigfTT~~~~~rss~y~-------------t---D--AV~~a~~~A~e~rr~f~~pvlIdlv~YRr~GHne-~Ddp--- 490 (936)
|+|+++++...+.+..+. - | +++.|.+.|.+ ..++|+||++.|+|-.||+. .|++
T Consensus 185 N~~~i~~~~~~~~~~d~~~~~~a~G~~~~~~vdG~d~~~l~~al~~a~~---~~~~P~lI~~~T~kg~G~~~~~~~~~~H 261 (669)
T 2r8o_A 185 NGISIDGHVEGWFTDDTAMRFEAYGWHVIRDIDGHDAASIKRAVEEARA---VTDKPSLLMCKTIIGFGSPNKAGTHDSH 261 (669)
T ss_dssp CSEETTEEGGGTCCCCHHHHHHHTTCEEEEEEETTCHHHHHHHHHHHHH---CCSSCEEEEEECCTTTTCTTTTTSGGGT
T ss_pred CCcEeccccccccCccHHHHHHHCCCeEEeEECCCCHHHHHHHHHHHHh---cCCCCEEEEEEeEeccCcCCcCCCCccc
Confidence 999999876533222111 1 2 77777777754 36899999999999999983 4443
Q ss_pred -CCCCHHHHHHHHcCCCHHHHHHHHHHHcCCCCHHHHHHHHH-----HHHHHHHHHHHHhhhcCCCccchhhhhccCCCC
Q 002323 491 -SFTQPKMYQVIRSHPSAFEIYQKKLLESAQVTQEDINRIQE-----KVNTILNEEFMASKDYVPKRRDWLSAYWAGFKS 564 (936)
Q Consensus 491 -~ytqp~~y~~i~~~~dpl~~y~~~Li~eGilt~eei~~i~~-----~~~~~l~~a~~~A~~~~p~~~~~~~~~w~~~~~ 564 (936)
.|+.+++++.+++.-. .. +... .+.++..+.+++ ......++.+...++..|.....+.
T Consensus 262 ~~~~~~ee~~~~~~~~~-~~-~~~f-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~-------- 326 (669)
T 2r8o_A 262 GAPLGDAEIALTREQLG-WK-YAPF-----EIPSEIYAQWDAKEAGQAKESAWNEKFAAYAKAYPQEAAEFT-------- 326 (669)
T ss_dssp SSCCCHHHHHHHHHHHT-CC-CCTT-----CCCHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCHHHHHHHH--------
T ss_pred CCCCCHHHHHHHHHHcC-CC-cccc-----cCCHHHHHHHHHHhhhhHHHHHHHHHHHHHhhhChHHHHHHH--------
Confidence 5999999988874211 10 1100 112222211110 0001111111111100111000000
Q ss_pred cccccccCCCCCChHHHHHHHHHhccCCCCCCchhHHHHHHHHHHHHHhcCCcccHHHHHHHHhhhhhhcCCcEEEeccc
Q 002323 565 PEQVSRIRNTGVKPEILKNVGKAITNLPENFKPHRGVKKVYEQRAQMIETGEGIDWAVGEALAFATLLVEGNHVRLSGQD 644 (936)
Q Consensus 565 ~~~~~~~~~Tgv~~~~l~~i~~~~~~~P~~f~~h~~l~r~l~~R~~~~~~~~~iDWa~aE~LAfgsLl~eg~~Vrl~GqD 644 (936)
.+. -..+|+.+. +.+.+. .. .....++.+.--.|=.-+...++....+|++.++|
T Consensus 327 ------------------~~~--~~~lp~~~~--~~~~~~-~~--~~~~~~~~~~~r~a~~~~L~~l~~~~p~v~~~~aD 381 (669)
T 2r8o_A 327 ------------------RRM--KGEMPSDFD--AKAKEF-IA--KLQANPAKIASRKASQNAIEAFGPLLPEFLGGSAD 381 (669)
T ss_dssp ------------------HHH--HTCCCTTHH--HHHHHH-HH--HHHHSCCCEEHHHHHHHHHHHHTTTCTTEEEEESS
T ss_pred ------------------HHh--cccCChhhh--hhhHHH-hh--hhcCCCccHHHHHHHHHHHHHHHhhCCCeEEecCc
Confidence 000 002333221 111111 00 00011222222111122234567788899999999
Q ss_pred CCC--ccc-ccccceeeecCCCceeecCCCCcccCCCcceEEEccCcchhHHHHHHhhhccC-CCCcceeeeccchhhhh
Q 002323 645 VER--GTF-SHRHSVLHDQETGEKYCPLDHVMMNQDEEMFTVSNSSLSEFGVLGFELGYSME-NPNSLVLWEAQFGDFAN 720 (936)
Q Consensus 645 v~r--GtF-~~RHavl~dq~t~~~y~pL~~l~~~~~~g~~rV~nspLSE~avlG~e~G~sl~-g~~~LviwEaqFgDF~n 720 (936)
+.. ||| +. + ..+. +++ +.|++|++|+|.+++|++.|+|+. |.+| ++ ++|..|+.
T Consensus 382 l~~s~~~~~~~---------~-------~~f~--~~~-p~R~id~GIaE~~~v~~a~GlA~~gG~~P--~~-~tf~~F~~ 439 (669)
T 2r8o_A 382 LAPSNLTLWSG---------S-------KAIN--EDA-AGNYIHYGVREFGMTAIANGISLHGGFLP--YT-STFLMFVE 439 (669)
T ss_dssp CHHHHTCCCTT---------C-------CBTT--TCT-TCSEEECCSCHHHHHHHHHHHHHHSSCEE--EE-EEEGGGGG
T ss_pred ccccccccccc---------c-------cccc--ccC-CCCeeecchhHHHHHHHHHHHHHcCCCeE--EE-eehHHHHH
Confidence 975 444 22 3 5566 555 789999999999999999999999 8899 44 56777765
Q ss_pred hHHHHHHHHHhhhhhhhcCccccEEEcCccC--CC-CCccccCchhhhhhhcCCCCCCcccCCCchhhhhccccceEEEE
Q 002323 721 GAQVIFDQFLSSGESKWLRQTGLVVLLPHGY--DG-QGPEHSSARLERFLQMSDDNPFVIPEMDPTLRKQIQECNWQIVN 797 (936)
Q Consensus 721 ~Aq~iidqfi~~~~~kw~~~s~lv~~lPhG~--~G-~GpeHSs~RiERfLQl~~~~~~~~~~~pg~~~~~~~~~N~~Vv~ 797 (936)
-++.+|-. .+ ....|+|++++|+. .| -||.| |+ + +|..++.++|| |+|+.
T Consensus 440 ~~~~~ir~---~a----~~~lpvv~~~t~~g~~~G~dG~tH-q~-~--------edla~lr~iP~----------l~V~~ 492 (669)
T 2r8o_A 440 YARNAVRM---AA----LMKQRQVMVYTHDSIGLGEDGPTH-QP-V--------EQVASLRVTPN----------MSTWR 492 (669)
T ss_dssp TTHHHHHH---HH----HTTCCCEEEEECCSGGGCTTCTTT-CC-S--------SHHHHHHTSTT----------CEEEC
T ss_pred HHHHHHHH---HH----hcCCCEEEEEeCCCcCcCCCCCcc-CC-H--------HHHHHhcCCCC----------CEEEe
Confidence 55444332 11 23679999998743 24 68999 55 3 33345667885 99999
Q ss_pred cCCHHHHHHHHHHHHhcCCCCcEEEEccccccCCCCCCCCcccccccCCCCCCCCCCCceeEeecCCCCCCCCCCCccEE
Q 002323 798 VTTPANYFHVLRRQIHRGFRKPLIVISPKNLLRHKDCKSNLSEFDDVQGHPGFDKQGTRFKRLIKDQNGHSDLEEGIRRL 877 (936)
Q Consensus 798 pstpa~~fhlLrrq~~r~~~~Pli~~~pK~Llr~~~~~S~l~ef~~~~~~~~~~~pg~~F~~vi~d~~~~~~~~~~v~rv 877 (936)
|+++.+++++|+.+++. .+.|++|..||..+..- ...-+++.. .+-|. .|+.+.. . +-+-+
T Consensus 493 Pad~~E~~~~l~~a~~~-~~~Pv~i~~~r~~~~~~--~~~~~~~~~--------~~~G~--~vl~~~~-----g-~~dv~ 553 (669)
T 2r8o_A 493 PCDQVESAVAWKYGVER-QDGPTALILSRQNLAQQ--ERTEEQLAN--------IARGG--YVLKDCA-----G-QPELI 553 (669)
T ss_dssp CSSHHHHHHHHHHHHHC-SSSCEEEECCSSEECCC--CCCHHHHHH--------GGGSC--EEEECCS-----S-SCSEE
T ss_pred cCCHHHHHHHHHHHHHh-CCCcEEEEeCCCCCCCC--CCccchhhh--------ccCCC--EEEeccC-----C-CCCEE
Confidence 99999999999999982 27899999999876321 011111110 11133 3454421 1 12358
Q ss_pred EEeCchhHHHHHHhh
Q 002323 878 VLCSGKVFITSLMKG 892 (936)
Q Consensus 878 ilcsGkvyydL~~~r 892 (936)
|+++|-.....+++.
T Consensus 554 iva~G~~v~~al~Aa 568 (669)
T 2r8o_A 554 FIATGSEVELAVAAY 568 (669)
T ss_dssp EEECGGGHHHHHHHH
T ss_pred EEEECHHHHHHHHHH
Confidence 999999887766554
No 21
>1umd_B E1-beta, 2-OXO acid dehydrogenase beta subunit; alpha(2)beta(2) tetramer, structural genomics; HET: TDP; 1.90A {Thermus thermophilus} SCOP: c.36.1.7 c.48.1.2 PDB: 1um9_B* 1umc_B* 1umb_B*
Probab=99.93 E-value=6.3e-26 Score=249.41 Aligned_cols=213 Identities=24% Similarity=0.317 Sum_probs=169.4
Q ss_pred cccHHHHHHHHhhhhhhcCCcEEEecccCCC--cccccccceeeecCCCceeecCCCCcccCCCcceEEEccCcchhHHH
Q 002323 617 GIDWAVGEALAFATLLVEGNHVRLSGQDVER--GTFSHRHSVLHDQETGEKYCPLDHVMMNQDEEMFTVSNSSLSEFGVL 694 (936)
Q Consensus 617 ~iDWa~aE~LAfgsLl~eg~~Vrl~GqDv~r--GtF~~RHavl~dq~t~~~y~pL~~l~~~~~~g~~rV~nspLSE~avl 694 (936)
.++|..|...|+..|+.++.+|++.|+|+++ |||.. + +++. +++|+.|++|++|||.+++
T Consensus 3 ~~~~~~a~~~~l~~l~~~~~~vv~~~~D~~~~~g~~~~---------~-------~~~~--~~~gp~r~~~~gIaE~~~v 64 (324)
T 1umd_B 3 LMTMVQALNRALDEEMAKDPRVVVLGEDVGKRGGVFLV---------T-------EGLL--QKYGPDRVMDTPLSEAAIV 64 (324)
T ss_dssp EECHHHHHHHHHHHHHHHCTTEEEEETTCSTTCCTTST---------T-------TTHH--HHHCTTTEEECCSCHHHHH
T ss_pred CCcHHHHHHHHHHHHHhcCCCEEEECCcccccCCcchh---------h-------HHHH--HHhCCCcEEECchhHHHHH
Confidence 3789999999999999999999999999986 66655 4 8888 7888999999999999999
Q ss_pred HHHhhhccCCCCcceeeeccchhhhhhHHHHHHHHHhhhhhhhc------CccccEEEcCccCCCCCccccCchhhhhhh
Q 002323 695 GFELGYSMENPNSLVLWEAQFGDFANGAQVIFDQFLSSGESKWL------RQTGLVVLLPHGYDGQGPEHSSARLERFLQ 768 (936)
Q Consensus 695 G~e~G~sl~g~~~LviwEaqFgDF~n~Aq~iidqfi~~~~~kw~------~~s~lv~~lPhG~~G~GpeHSs~RiERfLQ 768 (936)
|+++|+|+.|.+| +|++||++|++-| +||++.+. ++|+ ...|+|+++|+|+.|.|+.|+|...++||+
T Consensus 65 ~~a~G~A~~G~~p--~~~~t~~~F~~~a---~dqi~~~~-a~~~~~~~g~~~~pvv~~~~~g~~~~~g~~hs~~~~a~~~ 138 (324)
T 1umd_B 65 GAALGMAAHGLRP--VAEIQFADYIFPG---FDQLVSQV-AKLRYRSGGQFTAPLVVRMPSGGGVRGGHHHSQSPEAHFV 138 (324)
T ss_dssp HHHHHHHHHTCEE--EEECSSGGGCGGG---HHHHHHTT-TTHHHHTTTSSCCCCEEEEEECSSSSCGGGSSCCCHHHHH
T ss_pred HHHHHHHHCCCEE--EEEeccHhHHHHH---HHHHHHHH-HHHHhhcCCCCcCCEEEEEcCCCCCCCCCccchhHHHHHh
Confidence 9999999999988 9999999998655 89988765 5653 578999999999976655555556778777
Q ss_pred cCCCCCCcccCCCchhhhhccccceEEEEcCCHHHHHHHHHHHHhcCCCCcEEEEccccccCCCCCCCCcccccccCCCC
Q 002323 769 MSDDNPFVIPEMDPTLRKQIQECNWQIVNVTTPANYFHVLRRQIHRGFRKPLIVISPKNLLRHKDCKSNLSEFDDVQGHP 848 (936)
Q Consensus 769 l~~~~~~~~~~~pg~~~~~~~~~N~~Vv~pstpa~~fhlLrrq~~r~~~~Pli~~~pK~Llr~~~~~S~l~ef~~~~~~~ 848 (936)
. +| ||+|+.|+||.+++++|+.+++ +++|++|++||.|+|.+...-+-+++.
T Consensus 139 ~----------iP----------~~~V~~P~d~~e~~~~l~~a~~--~~~Pv~i~~p~~l~~~~~~~~~~~~~~------ 190 (324)
T 1umd_B 139 H----------TA----------GLKVVAVSTPYDAKGLLKAAIR--DEDPVVFLEPKRLYRSVKEEVPEEDYT------ 190 (324)
T ss_dssp T----------ST----------TCEEEECCSHHHHHHHHHHHHH--CSSCEEEEEEGGGSSSCCEECCSSCCC------
T ss_pred c----------CC----------CCEEEEeCCHHHHHHHHHHHHh--cCCCEEEEechHhcCCCCCCcCCCCcc------
Confidence 4 44 4999999999999999999998 889999999999998643211111111
Q ss_pred CCCCCCCceeEeecCCCCCCCCCCCccEEEEeCchhHHHHHHhhcc
Q 002323 849 GFDKQGTRFKRLIKDQNGHSDLEEGIRRLVLCSGKVFITSLMKGGR 894 (936)
Q Consensus 849 ~~~~pg~~F~~vi~d~~~~~~~~~~v~rvilcsGkvyydL~~~r~~ 894 (936)
.|-|....+ . +..+.+|+|+|..++..+++.++
T Consensus 191 ---~~~Gk~~~~-~---------~g~dv~iva~G~~~~~a~~Aa~~ 223 (324)
T 1umd_B 191 ---LPIGKAALR-R---------EGKDLTLICYGTVMPEVLQAAAE 223 (324)
T ss_dssp ---CCTTCCEEE-E---------CCSSEEEEECGGGHHHHHHHHHH
T ss_pred ---ccCCcceEE-e---------cCCCEEEEEecHHHHHHHHHHHH
Confidence 122322222 1 12457999999999999877653
No 22
>3m49_A Transketolase; alpha-beta-alpha sandwich, csgid, transferase, structural genomics, center for structural genomics of infectious diseases; HET: MSE TDP PG5 TRS BTB; 2.00A {Bacillus anthracis} PDB: 3hyl_A*
Probab=99.93 E-value=8.9e-25 Score=261.53 Aligned_cols=411 Identities=14% Similarity=0.166 Sum_probs=250.8
Q ss_pred ccCCCccccceeechhHHHHHhcC-----CCCCCceEEEEEecCcccCCCchHHHhhhcc---CCCCCccccEEEEEEeC
Q 002323 362 NPSHLEAVDPVVVGKTRAKQYYSH-----DVDRTKNMGVLIHGDGSFAGQGVVYETLHLS---ALPNYTTGGTIHIVVNN 433 (936)
Q Consensus 362 NPSHLeav~PVa~G~ArA~q~~~~-----d~~~~~~v~v~~hGDgA~sGQGvv~EtLNlA---~LP~Y~~GGtIhIV~NN 433 (936)
...|+|...|.|+|+|+|.++.+. +.+..+..++|+.|||++. +|.++|+||+| +|| =+|+|+.||
T Consensus 138 ~tG~lG~gl~~AvG~AlA~~~~~~~~n~~~~~~~d~~v~~i~GDG~l~-eG~~~Eal~~A~~~~L~-----~livI~dnN 211 (690)
T 3m49_A 138 TTGPLGQGIATAVGMAMAERHLAAKYNRDAYNIVDHYTYAICGDGDLM-EGVSAEASSLAAHLQLG-----RLVVLYDSN 211 (690)
T ss_dssp CCCSTTHHHHHHHHHHHHHHHHHHHHCBTTBCCSCCCEEEEECHHHHH-SHHHHHHHHHHHHTTCT-----TEEEEEEEC
T ss_pred CCccccccHHHHHHHHHHHHHhhccccccccccCCCeEEEEECchhhh-hccHHHHHHHHHHhCCC-----eEEEEEECC
Confidence 456799999999999999987642 0011236899999999999 99999999999 775 278899999
Q ss_pred CcccccCCCCCCCcchhh-------------H-HHHHHHHHHHHHHHc-cCCCEEEEEEeeecCCCCCCCCC-C----CC
Q 002323 434 QVAFTTDPRAGRSSQYCT-------------D-AVVHVCELAAEWRQK-FHSDVVVDLVCYRRFGHNEIDEP-S----FT 493 (936)
Q Consensus 434 QigfTT~~~~~rss~y~t-------------D-AV~~a~~~A~e~rr~-f~~pvlIdlv~YRr~GHne~Ddp-~----yt 493 (936)
+|+++++........+.. | --..+...|++.+++ .++|+||++.|+|-.||....++ . --
T Consensus 212 ~~~i~~~~~~~~~~d~~~~~~a~G~~~~~v~DG~d~~~l~~Al~~a~~~~~~P~lI~v~T~kG~G~~~~~~~~~~Hg~~~ 291 (690)
T 3m49_A 212 DISLDGDLNRSFSESVEDRYKAYGWQVIRVEDGNDIEAIAKAIEEAKADEKRPTLIEVRTTIGFGSPNKSGKSASHGSPL 291 (690)
T ss_dssp SBCSSSBGGGTCCCCHHHHHHHHTCEEEEESCTTCHHHHHHHHHHHHHCCSSCEEEEEECCTTTTCTTTTTSGGGTSSCC
T ss_pred CeecccchhhccchhHHHHHHHcCCcEEEEecCCCHHHHHHHHHHHHhcCCCCEEEEEEeecccccCcccCcccccCCCC
Confidence 999998765432222110 1 012333445566666 78999999999999999744332 2 12
Q ss_pred CHHHHHHHHcC----CC--------HHHHHHHHHHHcCCCCHHHHHHHHHHHHH---HHHHHHHHhhhcCCCccchhhhh
Q 002323 494 QPKMYQVIRSH----PS--------AFEIYQKKLLESAQVTQEDINRIQEKVNT---ILNEEFMASKDYVPKRRDWLSAY 558 (936)
Q Consensus 494 qp~~y~~i~~~----~d--------pl~~y~~~Li~eGilt~eei~~i~~~~~~---~l~~a~~~A~~~~p~~~~~~~~~ 558 (936)
.+++++..++. .+ +.+.|++.+.++|.-.+++..++-.++.. ++.+.++.....+ -+..|.. .
T Consensus 292 ~~e~~~~~~~~l~~~~~~~F~v~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~a~~~~~~~~~~-lp~~~~~-~ 369 (690)
T 3m49_A 292 GVEETKLTKEAYAWTAEQDFHVAEEVYENFRKTVQDVGETAQAEWNTMLGEYAQAYPELANELQAAMNGL-LPEGWEQ-N 369 (690)
T ss_dssp CHHHHHHHHHHTTCCCCSTTCCCHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHHTTC-CCTTGGG-G
T ss_pred CHHHHHHHHHHhCCCCCCCCcCChhHHHHHHHHHhhhcchhhHHHHHHHHHHHHhCHHHHHHHHHHhccc-Cchhhhh-h
Confidence 45566654421 11 12233332333332112222222222222 1122222211111 0011110 0
Q ss_pred ccCCCCcccccccCCCCCChHHHHHHHHHhccCCCCCCchhHHHHHHHHHHHHHhcCCcccHHHHHHHHhhhhhhcCCcE
Q 002323 559 WAGFKSPEQVSRIRNTGVKPEILKNVGKAITNLPENFKPHRGVKKVYEQRAQMIETGEGIDWAVGEALAFATLLVEGNHV 638 (936)
Q Consensus 559 w~~~~~~~~~~~~~~Tgv~~~~l~~i~~~~~~~P~~f~~h~~l~r~l~~R~~~~~~~~~iDWa~aE~LAfgsLl~eg~~V 638 (936)
+..+ ..+-...+.+.++ ++ ...++.+..+|
T Consensus 370 ~~~~----------~~~~~~a~R~a~g--------------------------------------~~--L~~~~~~~p~v 399 (690)
T 3m49_A 370 LPTY----------ELGSKAATRNSSG--------------------------------------AV--INAIAESVPSF 399 (690)
T ss_dssp CCCC----------CTTCEEEHHHHHH--------------------------------------HH--HHHHHHHCTTE
T ss_pred cccc----------ccccchHHHHHHH--------------------------------------HH--HHHHHhhCCCE
Confidence 0000 0000001111111 11 22445677889
Q ss_pred EEecccCCC--ccc-ccccceeeecCCCceeecCCCCcccCCCcceEEEccCcchhHHHHHHhhhccC-CCCcceeee--
Q 002323 639 RLSGQDVER--GTF-SHRHSVLHDQETGEKYCPLDHVMMNQDEEMFTVSNSSLSEFGVLGFELGYSME-NPNSLVLWE-- 712 (936)
Q Consensus 639 rl~GqDv~r--GtF-~~RHavl~dq~t~~~y~pL~~l~~~~~~g~~rV~nspLSE~avlG~e~G~sl~-g~~~LviwE-- 712 (936)
.+.|+|+.. ||+ +. | +++. +++++.|++|++|+|.+++|++.|+|+. |.+| +++
T Consensus 400 v~~~aDl~~s~~~~~~~---------~-------~~f~--~~~~~~R~~d~GIaE~~mv~~A~GlA~~gG~~P--~~~tf 459 (690)
T 3m49_A 400 FGGSADLAGSNKTYMNN---------E-------KDFT--RDDYSGKNIWYGVREFAMGAAMNGIALHGGLKT--YGGTF 459 (690)
T ss_dssp EEEESSCHHHHTCCCTT---------S-------CBCB--TTBTTCCEEECCSCHHHHHHHHHHHHHHSSCEE--EEEEE
T ss_pred EEEeCcccccCCccccc---------c-------ccch--hhcCCCceEEcCchHHHHHHHHHHHHHcCCCEE--EEEec
Confidence 999999975 443 44 5 7787 7788999999999999999999999999 8999 777
Q ss_pred ccchhhhhhHHHHHHHHHhhhhhhhcCccccEEEcCccC--CC-CCccccCchhhhhhhcCCCCCCcccCCCchhhhhcc
Q 002323 713 AQFGDFANGAQVIFDQFLSSGESKWLRQTGLVVLLPHGY--DG-QGPEHSSARLERFLQMSDDNPFVIPEMDPTLRKQIQ 789 (936)
Q Consensus 713 aqFgDF~n~Aq~iidqfi~~~~~kw~~~s~lv~~lPhG~--~G-~GpeHSs~RiERfLQl~~~~~~~~~~~pg~~~~~~~ 789 (936)
++|.||...| | +.+ + . ...|++++++|+. .| -||.|.+- +|..+|.++||
T Consensus 460 ~~Fs~f~~~a---i-r~~--a--l--~~lpVv~v~~~~gigvG~dG~THq~i----------ed~a~lr~iPn------- 512 (690)
T 3m49_A 460 FVFSDYLRPA---I-RLA--A--L--MQLPVTYVFTHDSIAVGEDGPTHEPI----------EQLAALRAMPN------- 512 (690)
T ss_dssp GGGGGGGHHH---H-HHH--H--H--HTCCCEEEEECCSGGGCTTCGGGCCS----------SHHHHHHTSTT-------
T ss_pred HHHHHHHHHH---H-HHH--H--h--cCCCcEEEEECCCcCCCCCCCccCCH----------HHHHHHhcCCC-------
Confidence 8999998765 2 111 1 1 2589999999864 34 59999654 33456778996
Q ss_pred ccceEEEEcCCHHHHHHHHHHHHhcCC-CCcEEEEccccccCCCCCCC-C-cccccccCCCCCCCCCCCceeEeecCCCC
Q 002323 790 ECNWQIVNVTTPANYFHVLRRQIHRGF-RKPLIVISPKNLLRHKDCKS-N-LSEFDDVQGHPGFDKQGTRFKRLIKDQNG 866 (936)
Q Consensus 790 ~~N~~Vv~pstpa~~fhlLrrq~~r~~-~~Pli~~~pK~Llr~~~~~S-~-l~ef~~~~~~~~~~~pg~~F~~vi~d~~~ 866 (936)
|+|+.|++|.+++++|+.++. . ++|++|..|+.-+..-.... + ..++. -|. .|+.+..
T Consensus 513 ---l~V~~Pad~~E~~~~l~~Ai~--~~~~Pv~ir~~R~~~p~~~~~~~~~~~~~~-----------~G~--~vlr~g~- 573 (690)
T 3m49_A 513 ---VSVIRPADGNESVAAWRLALE--STNKPTALVLTRQDLPTLEGAKDDTYEKVA-----------KGA--YVVSASK- 573 (690)
T ss_dssp ---CEEECCSSHHHHHHHHHHHHH--CSSSCEEEECCSSEEECCHHHHTTHHHHHH-----------TSC--EEEECCS-
T ss_pred ---CEEEeeCCHHHHHHHHHHHHH--cCCCCEEEEeecccCCCCCccccccccccC-----------CCe--EEEEecC-
Confidence 999999999999999999998 5 68999998875432100000 0 01222 243 3565431
Q ss_pred CCCCCCCccEEEEeCchhHHHHHHhhc---ccCCcee
Q 002323 867 HSDLEEGIRRLVLCSGKVFITSLMKGG---RSAVQVM 900 (936)
Q Consensus 867 ~~~~~~~v~rvilcsGkvyydL~~~r~---~~~~~~~ 900 (936)
..+-+-+|+++|......+++.+ ++++++-
T Consensus 574 ----~g~~dvtiia~G~~v~~Al~Aa~~L~~~GI~~~ 606 (690)
T 3m49_A 574 ----KETADVILLATGSEVSLAVEAQKALAVDGVDAS 606 (690)
T ss_dssp ----SSSCSEEEEECTTHHHHHHHHHHHHHHTTCCEE
T ss_pred ----CCCCCEEEEEechHHHHHHHHHHHHHhcCCCeE
Confidence 01123589999998776666543 3455543
No 23
>1itz_A Transketolase; calvin cycle, cofactor, thiamine pyrophosphate, plant, transferase; HET: TPP; 2.30A {Zea mays} SCOP: c.36.1.6 c.36.1.10 c.48.1.1
Probab=99.93 E-value=1.1e-23 Score=252.09 Aligned_cols=397 Identities=13% Similarity=0.137 Sum_probs=234.5
Q ss_pred cccCCCccccceeechhHHHHHhcC-----CCCCCceEEEEEecCcccCCCchHHHhhhcc---CC-CCCccccEEEEEE
Q 002323 361 ANPSHLEAVDPVVVGKTRAKQYYSH-----DVDRTKNMGVLIHGDGSFAGQGVVYETLHLS---AL-PNYTTGGTIHIVV 431 (936)
Q Consensus 361 ~NPSHLeav~PVa~G~ArA~q~~~~-----d~~~~~~v~v~~hGDgA~sGQGvv~EtLNlA---~L-P~Y~~GGtIhIV~ 431 (936)
....|+|...|.|+|+|+|.++.+. +.+..+..++|+.|||++. +|.++|+||+| +| + +|+||.
T Consensus 124 ~~~G~lG~gl~~AvG~AlA~~~~~~~~n~~~~~~~~~~v~~i~GDG~~~-eG~~~Eal~~A~~~~L~~------li~i~~ 196 (675)
T 1itz_A 124 VTTGPLGQGIANAVGLALAEKHLAARFNKPDSEIVDHYTYVILGDGCQM-EGIANEACSLAGHWGLGK------LIAFYD 196 (675)
T ss_dssp SCCCSTTHHHHHHHHHHHHHHHHHHHHCBTTBCCCCCCEEEEECHHHHH-SHHHHHHHHHHHHTTCTT------EEEEEE
T ss_pred ECCccHHhHHHHHHHHHHHhhhhcccccccccCCCCCEEEEEECHhHhc-hhHHHHHHHHHHHhCCCc------EEEEEE
Confidence 3456799999999999999987651 0011237899999999999 99999999999 88 7 999999
Q ss_pred eCCcccccCCCCCCCcchh----------------h-H--HHHHHHHHHHHHHHccCCCEEEEEEeeecCCCCCCCCC--
Q 002323 432 NNQVAFTTDPRAGRSSQYC----------------T-D--AVVHVCELAAEWRQKFHSDVVVDLVCYRRFGHNEIDEP-- 490 (936)
Q Consensus 432 NNQigfTT~~~~~rss~y~----------------t-D--AV~~a~~~A~e~rr~f~~pvlIdlv~YRr~GHne~Ddp-- 490 (936)
||+|+++++........+. . | +++.|.+.|.+ ..++|+||++.|+|-+||....++
T Consensus 197 nN~~~i~~~~~~~~~~d~~~~~~a~G~~~~~~vdG~~d~~~l~~al~~a~~---~~~~P~lI~~~T~kg~G~~~~~~~~~ 273 (675)
T 1itz_A 197 DNHISIDGDTEIAFTEDVSTRFEALGWHTIWVKNGNTGYDDIRAAIKEAKA---VTDKPTLIKVTTTIGFGSPNKANSYS 273 (675)
T ss_dssp ECSEETTEEGGGTCCSCHHHHHHHTTCEEEEESCTTTCHHHHHHHHHHHHH---CCSSCEEEEEECCTTTTCTTTTTSGG
T ss_pred CCCccCCCChhhhcChhHHHHHHhCCCEEEEEecCCCCHHHHHHHHHHHHH---CCCCeEEEEEeeecccCcccccCccc
Confidence 9999998865443211110 1 3 55555554432 268999999999999999864333
Q ss_pred ---CCCCHHHHHHHHcC----CCHHHH-------HHHHHHHcCCCCHHHHHHHHHHHHHHHHH----------HHHHhhh
Q 002323 491 ---SFTQPKMYQVIRSH----PSAFEI-------YQKKLLESAQVTQEDINRIQEKVNTILNE----------EFMASKD 546 (936)
Q Consensus 491 ---~ytqp~~y~~i~~~----~dpl~~-------y~~~Li~eGilt~eei~~i~~~~~~~l~~----------a~~~A~~ 546 (936)
....+++++.+++. .+|... |++. +++| +..+.++++.+.+ .++...+
T Consensus 274 ~H~~~~~~e~~~~~~~~~~~~~~~f~~~~~~~~~~~~~-~~~g-------~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~ 345 (675)
T 1itz_A 274 VHGSALGAKEVEATRQNLGWPYDTFFVPEDVKSHWSRH-TPEG-------AALEADWNAKFAEYEKKYADDAATLKSIIT 345 (675)
T ss_dssp GTSSCCCHHHHHHHHHHHTCCCCTTCCCHHHHHHHTTH-HHHH-------HHHHHHHHHHHHHHHHHSHHHHHHHHHHHH
T ss_pred ccCCCCCHHHHHHHHHHcCCCcccccCChhHHHHHHHH-Hhhh-------hhhHHHHHHHHHHhhhhChHHHHHHHHHhc
Confidence 24566777766532 011111 1100 0111 1111122222221 1111111
Q ss_pred cCCCccchhhhhccCCCCcccccccCCCCCChHHHHHHHHHhccCCCCCCchhHHHHHHHHHHHHHhcCCcccHHHHHHH
Q 002323 547 YVPKRRDWLSAYWAGFKSPEQVSRIRNTGVKPEILKNVGKAITNLPENFKPHRGVKKVYEQRAQMIETGEGIDWAVGEAL 626 (936)
Q Consensus 547 ~~p~~~~~~~~~w~~~~~~~~~~~~~~Tgv~~~~l~~i~~~~~~~P~~f~~h~~l~r~l~~R~~~~~~~~~iDWa~aE~L 626 (936)
.. .+. .|..- .|. +. ..+-...+.+.+ .++
T Consensus 346 ~~-~p~-----~~~~~-~~~-~~---~~~~~~a~r~a~--------------------------------------~~~- 375 (675)
T 1itz_A 346 GE-LPT-----GWVDA-LPK-YT---PESPGDATRNLS--------------------------------------QQC- 375 (675)
T ss_dssp CC-CCT-----TGGGG-SCC-CC---TTSCCBCHHHHH--------------------------------------HHH-
T ss_pred cc-CCc-----hhhhh-hhh-hc---cCCcchHHHHHH--------------------------------------HHH-
Confidence 11 001 12110 000 00 000000011111 111
Q ss_pred HhhhhhhcCCcEEEecccCCCcccccccceeeecCCCceeecCCCCcccC-CCcceEEEccCcchhHHHHHHhhhccCC-
Q 002323 627 AFATLLVEGNHVRLSGQDVERGTFSHRHSVLHDQETGEKYCPLDHVMMNQ-DEEMFTVSNSSLSEFGVLGFELGYSMEN- 704 (936)
Q Consensus 627 AfgsLl~eg~~Vrl~GqDv~rGtF~~RHavl~dq~t~~~y~pL~~l~~~~-~~g~~rV~nspLSE~avlG~e~G~sl~g- 704 (936)
...++....+|++.|+|+...+... + .-+..+. + ++ +.|++|++|+|.+++|++.|+|+.|
T Consensus 376 -L~~i~~~~p~v~~~~aDl~~s~~~~---------~----~g~~~f~--~~~~-~~R~id~gIaE~~~v~~a~GlA~~G~ 438 (675)
T 1itz_A 376 -LNALANVVPGLIGGSADLASSNMTL---------L----KMFGDFQ--KDTA-EERNVRFGVREHGMGAICNGIALHSP 438 (675)
T ss_dssp -HHHHHHHCTTEEEEESSCHHHHTCC---------C----TTCCBCC--TTCT-TCCBCCCCSCHHHHHHHHHHHHTTCT
T ss_pred -HHHHHHhCCCEEEEecccccccccc---------c----ccccccc--ccCC-CCCeEeecccHHHHHHHHHHHHhcCC
Confidence 2234556678999999997522211 1 0012354 4 55 7899999999999999999999999
Q ss_pred -CCcceeeeccchhhhhhHHHHHHHHHhhhhhhhcCccccEEEcCcc-C-CC-CCccccCchhhhhhhcCCCCCCcccCC
Q 002323 705 -PNSLVLWEAQFGDFANGAQVIFDQFLSSGESKWLRQTGLVVLLPHG-Y-DG-QGPEHSSARLERFLQMSDDNPFVIPEM 780 (936)
Q Consensus 705 -~~~LviwEaqFgDF~n~Aq~iidqfi~~~~~kw~~~s~lv~~lPhG-~-~G-~GpeHSs~RiERfLQl~~~~~~~~~~~ 780 (936)
.+| +++. |.+|+.-+|.+|-. .+ ....|+|++..|+ . .| -||.| |+ .+|..++.++
T Consensus 439 ~~~P--~~~t-~~~F~~~~~~~ir~---~a----~~~lpvv~~~t~~g~g~G~dG~tH-q~---------~edla~lr~i 498 (675)
T 1itz_A 439 GFVP--YCAT-FFVFTDYMRGAMRI---SA----LSEAGVIYVMTHDSIGLGEDGPTH-QP---------IEHLVSFRAM 498 (675)
T ss_dssp TCEE--EEEE-EGGGHHHHHHHHHH---HH----HHTCCCEEEEECCSGGGCTTCTTT-CC---------SSHHHHHHSS
T ss_pred CCEE--EEEE-HHHHHHHHHHHHHH---HH----hcCCCEEEEEECCccccCCCCCCc-Cc---------HHHHHHhccC
Confidence 888 6766 55555444433322 12 2257999998664 3 24 78999 55 3333566788
Q ss_pred CchhhhhccccceEEEEcCCHHHHHHHHHHHHhcCC-CCcEEEEccccccCCCCCCCCcccccccCCCCCCCCCCCceeE
Q 002323 781 DPTLRKQIQECNWQIVNVTTPANYFHVLRRQIHRGF-RKPLIVISPKNLLRHKDCKSNLSEFDDVQGHPGFDKQGTRFKR 859 (936)
Q Consensus 781 pg~~~~~~~~~N~~Vv~pstpa~~fhlLrrq~~r~~-~~Pli~~~pK~Llr~~~~~S~l~ef~~~~~~~~~~~pg~~F~~ 859 (936)
|| |+|+.|+++.++.++|+.++. . ++|++|..||.-+-. . +.++.. ..|-|. .
T Consensus 499 P~----------l~V~~Pad~~e~~~~l~~a~~--~~~~Pv~i~~~r~~~p~--~--~~~~~~--------~~~~Ga--~ 552 (675)
T 1itz_A 499 PN----------ILMLRPADGNETAGAYKVAVL--NRKRPSILALSRQKLPH--L--PGTSIE--------GVEKGG--Y 552 (675)
T ss_dssp SS----------CEEECCCSHHHHHHHHHHHHH--CTTSCEEEEECSSCBCC--C--TTCCHH--------HHTTSS--E
T ss_pred CC----------eEEEECCCHHHHHHHHHHHHH--hCCCcEEEEecCCCCCC--C--CCcccc--------ccccCC--E
Confidence 85 999999999999999999998 4 799999999754311 0 111110 012233 3
Q ss_pred eecCCCCCCCCCCCccEEEEeCchhHHHHHHhh
Q 002323 860 LIKDQNGHSDLEEGIRRLVLCSGKVFITSLMKG 892 (936)
Q Consensus 860 vi~d~~~~~~~~~~v~rvilcsGkvyydL~~~r 892 (936)
|+.+.+ ..++-+-+|+++|-.....+++.
T Consensus 553 vl~~~~----~G~~~dv~iva~G~~v~~al~Aa 581 (675)
T 1itz_A 553 TISDNS----TGNKPDLIVMGTGSELEIAAKAA 581 (675)
T ss_dssp EEEECC----STTCCSEEEEECGGGHHHHHHHH
T ss_pred EEeccc----CCCCCCEEEEEECHHHHHHHHHH
Confidence 454421 01013458999999887666544
No 24
>3l84_A Transketolase; TKT, structural genomics, center for structur genomics of infectious diseases, csgid, transferase; HET: MSE; 1.36A {Campylobacter jejuni} PDB: 3m6l_A* 3m34_A* 3m7i_A*
Probab=99.92 E-value=1.4e-24 Score=257.65 Aligned_cols=405 Identities=13% Similarity=0.089 Sum_probs=239.8
Q ss_pred cccCCCccccceeechhHHHHHhcCC--CCCCceEEEEEecCcccCCCchHHHhhhcc---CCCCCccccEEEEEEeCCc
Q 002323 361 ANPSHLEAVDPVVVGKTRAKQYYSHD--VDRTKNMGVLIHGDGSFAGQGVVYETLHLS---ALPNYTTGGTIHIVVNNQV 435 (936)
Q Consensus 361 ~NPSHLeav~PVa~G~ArA~q~~~~d--~~~~~~v~v~~hGDgA~sGQGvv~EtLNlA---~LP~Y~~GGtIhIV~NNQi 435 (936)
....|+|...|.|+|+|+|.++.+.. .+..+..++|+.|||++. +|.++|+||+| +|| =+|+|+.||+|
T Consensus 111 ~~tG~lG~gl~~AvG~AlA~~~~~~~~n~~~~d~~v~~v~GDG~~~-eG~~~Eal~~A~~~~L~-----~livi~nnN~~ 184 (632)
T 3l84_A 111 IATGPLGQGVANAVGFAMAAKKAQNLLGSDLIDHKIYCLCGDGDLQ-EGISYEACSLAGLHKLD-----NFILIYDSNNI 184 (632)
T ss_dssp SCCCSTTHHHHHHHHHHHHHHHHHHHHCTTTCCCCEEEEEEHHHHH-SHHHHHHHHHHHHTTCT-----TEEEEEEECSE
T ss_pred cCCcchhhHHHHHHHHHHHHHhhccccccCCCCCeEEEEECCcchh-hccHHHHHHHHHHcCCC-----cEEEEEECCCc
Confidence 34577999999999999999976530 001126899999999999 99999999999 775 38899999999
Q ss_pred ccccCCCCCCCcchhh------------H-HHHHHHHHHHHHHHccCCCEEEEEEeeecCCCCCCCCC-C----CCCHHH
Q 002323 436 AFTTDPRAGRSSQYCT------------D-AVVHVCELAAEWRQKFHSDVVVDLVCYRRFGHNEIDEP-S----FTQPKM 497 (936)
Q Consensus 436 gfTT~~~~~rss~y~t------------D-AV~~a~~~A~e~rr~f~~pvlIdlv~YRr~GHne~Ddp-~----ytqp~~ 497 (936)
+++++........+.. | -=..+...|++.+++.++|+||++.|+|-.||....++ . --.+++
T Consensus 185 ~i~~~~~~~~~~d~~~~~~a~G~~~~~vdGhd~~~l~~al~~A~~~~~P~lI~v~T~kG~G~~~~e~~~~~Hg~~l~~e~ 264 (632)
T 3l84_A 185 SIEGDVGLAFNENVKMRFEAQGFEVLSINGHDYEEINKALEQAKKSTKPCLIIAKTTIAKGAGELEGSHKSHGAPLGEEV 264 (632)
T ss_dssp ETTEEGGGTCCCCHHHHHHHTTCEEEEEETTCHHHHHHHHHHHHTCSSCEEEEEECCTTTTCGGGTTCGGGSSSCCCHHH
T ss_pred ccccchhhhcChhHHHHHHHcCCeEEEEeeCCHHHHHHHHHHHHhCCCCEEEEEeeEeeecCCCCCCcccccCCCCCHHH
Confidence 9988765433222211 1 01233334455556688999999999999999754322 2 124555
Q ss_pred HHHHHcC--CCHHHHHHHHHHHcCCCCHHHHHHHH------HHHHHHHHHHHHHhhhcCCCcc-chhhhhccCCCCcccc
Q 002323 498 YQVIRSH--PSAFEIYQKKLLESAQVTQEDINRIQ------EKVNTILNEEFMASKDYVPKRR-DWLSAYWAGFKSPEQV 568 (936)
Q Consensus 498 y~~i~~~--~dpl~~y~~~Li~eGilt~eei~~i~------~~~~~~l~~a~~~A~~~~p~~~-~~~~~~w~~~~~~~~~ 568 (936)
++..++. .+|...| .+.++..+.++ +...+..++.+.. +.+ |... .++...|.... |.
T Consensus 265 ~~~~~~~l~~~~~~~f--------~v~~~~~~~~~~~~~~g~~~~~~w~~~~~~-~~~-p~~~~~~~p~~~~~~~-~~-- 331 (632)
T 3l84_A 265 IKKAKEQAGFDPNISF--------HIPQASKIRFESAVELGDLEEAKWKDKLEK-SAK-KELLERLLNPDFNKIA-YP-- 331 (632)
T ss_dssp HHHHHHHHTCCTTCCS--------CCCHHHHHHHHTHHHHHHHHHHHHHHHHHH-SSC-HHHHHHHHSCCSTTCC-CC--
T ss_pred HHHHHHHhCCCCCCCc--------cCChHHHHHHHHHHhhcchhHHHHHHHhhc-ccC-chhhhhhCccchhhhc-ch--
Confidence 5544320 1111111 12222222222 1111122222222 111 1110 11111121110 00
Q ss_pred cccCCCCCChHHHHHHHHHhccCCCCCCchhHHHHHHHHHHHHHhcCCcccHHHHHHHHhhhhhhcCCcEEEecccCCCc
Q 002323 569 SRIRNTGVKPEILKNVGKAITNLPENFKPHRGVKKVYEQRAQMIETGEGIDWAVGEALAFATLLVEGNHVRLSGQDVERG 648 (936)
Q Consensus 569 ~~~~~Tgv~~~~l~~i~~~~~~~P~~f~~h~~l~r~l~~R~~~~~~~~~iDWa~aE~LAfgsLl~eg~~Vrl~GqDv~rG 648 (936)
...+....+.+..+++ ...|.....++.+.+.|+..-
T Consensus 332 ---~~~~~~~a~r~a~~~~----------------------------------------l~~l~~~~p~~v~~~aDl~~s 368 (632)
T 3l84_A 332 ---DFKGKDLATRDSNGEI----------------------------------------LNVLAKNLEGFLGGSADLGPS 368 (632)
T ss_dssp ---CCTTCCBCHHHHHHHH----------------------------------------HHHHHHHCTTEEEEESSCHHH
T ss_pred ---hccccchHHHHHHHHH----------------------------------------HHHHHhhCCCEEEEecccCCc
Confidence 0000011111111111 112344567788899998531
Q ss_pred ccccccceeeecCCCceeecCCCCcccCCCcceEEEccCcchhHHHHHHhhhccC-CCCcceeeeccchhhhhhHHHHHH
Q 002323 649 TFSHRHSVLHDQETGEKYCPLDHVMMNQDEEMFTVSNSSLSEFGVLGFELGYSME-NPNSLVLWEAQFGDFANGAQVIFD 727 (936)
Q Consensus 649 tF~~RHavl~dq~t~~~y~pL~~l~~~~~~g~~rV~nspLSE~avlG~e~G~sl~-g~~~LviwEaqFgDF~n~Aq~iid 727 (936)
+ . | + ++ .. ++|++.|++|++|+|.+++|++.|+|+. |.+| +++. |.+|+.-|+.
T Consensus 369 ~-~----------~---~--~~-~~--~~f~p~R~~d~GIaE~~~v~~a~GlA~~gG~~P--~~~~-f~~F~~~~~~--- 423 (632)
T 3l84_A 369 N-K----------T---E--LH-SM--GDFVEGKNIHFGIREHAMAAINNAFARYGIFLP--FSAT-FFIFSEYLKP--- 423 (632)
T ss_dssp H-T----------C---C--CT-TS--CBTTTSSEEECCSCHHHHHHHHHHHHHHSSCEE--EEEE-EGGGHHHHHH---
T ss_pred c-C----------c---c--hh-cc--cccCCCCeEEeCccHHHHHHHHHHHHHcCCCEE--EEEe-cHHHHHHHHH---
Confidence 0 0 1 0 11 12 4577899999999999999999999999 8999 8887 8888866644
Q ss_pred HHHhhhhhhhcCccccEEEcCc-cC-CC-CCccccCchhhhhhhcCCCCCCcccCCCchhhhhccccceEEEEcCCHHHH
Q 002323 728 QFLSSGESKWLRQTGLVVLLPH-GY-DG-QGPEHSSARLERFLQMSDDNPFVIPEMDPTLRKQIQECNWQIVNVTTPANY 804 (936)
Q Consensus 728 qfi~~~~~kw~~~s~lv~~lPh-G~-~G-~GpeHSs~RiERfLQl~~~~~~~~~~~pg~~~~~~~~~N~~Vv~pstpa~~ 804 (936)
|+-..+ ....|+|+++.| |+ .| .||.|.+. +|..++.++|| |+|+.|++|.++
T Consensus 424 ~ir~~a----~~~~pv~~~~t~~g~g~G~dG~THq~~----------ed~a~lr~iP~----------l~V~~P~d~~e~ 479 (632)
T 3l84_A 424 AARIAA----LMKIKHFFIFTHDSIGVGEDGPTHQPI----------EQLSTFRAMPN----------FLTFRPADGVEN 479 (632)
T ss_dssp HHHHHH----HHTCCCEEEEECCSGGGCTTCGGGSCS----------SHHHHHHHSSS----------CEEECCSSHHHH
T ss_pred HHHHHh----ccCCCEEEEEECCCcCCCCCCCCCCCH----------hHHHHHhcCCC----------CEEEecCCHHHH
Confidence 432222 125899998755 43 34 59999544 34467788996 999999999999
Q ss_pred HHHHHHHHhcCCCCcEEEEccccccCCCCCCCCcccccccCCCCCCCCCCCceeEeecCCCCCCCCCCCccEEEEeCchh
Q 002323 805 FHVLRRQIHRGFRKPLIVISPKNLLRHKDCKSNLSEFDDVQGHPGFDKQGTRFKRLIKDQNGHSDLEEGIRRLVLCSGKV 884 (936)
Q Consensus 805 fhlLrrq~~r~~~~Pli~~~pK~Llr~~~~~S~l~ef~~~~~~~~~~~pg~~F~~vi~d~~~~~~~~~~v~rvilcsGkv 884 (936)
+++|+.++. .++|++|..|+..+ .+.......++.. | ..|+.+.+ .-+-+|+++|..
T Consensus 480 ~~~l~~A~~--~~~Pv~ir~~r~~~-~~~~~~~~~~~~~-----------g--~~vl~~~~-------g~dvtiia~G~~ 536 (632)
T 3l84_A 480 VKAWQIALN--ADIPSAFVLSRQKL-KALNEPVFGDVKN-----------G--AYLLKESK-------EAKFTLLASGSE 536 (632)
T ss_dssp HHHHHHHHH--CSSCEEEECCSSCB-CCCCCCSBCCGGG-----------S--SEEEECCT-------TCSEEEEECGGG
T ss_pred HHHHHHHHh--CCCCEEEEEcCCCC-CCCcccccccccc-----------c--cEEEEecC-------CCCEEEEEechH
Confidence 999999998 88999999987654 2111111122222 2 14555421 123589999998
Q ss_pred HHHHHHhhc---ccCCce
Q 002323 885 FITSLMKGG---RSAVQV 899 (936)
Q Consensus 885 yydL~~~r~---~~~~~~ 899 (936)
....+++.+ ++++++
T Consensus 537 v~~al~Aa~~L~~~Gi~~ 554 (632)
T 3l84_A 537 VWLCLESANELEKQGFAC 554 (632)
T ss_dssp HHHHHHHHHHHHHTTCCE
T ss_pred HHHHHHHHHHHHhcCCCe
Confidence 777666543 345554
No 25
>3kom_A Transketolase; rossmann fold, csgid, transferase, structural genomics, center for structural genomics of infectious DISE; HET: MSE; 1.60A {Francisella tularensis subsp}
Probab=99.92 E-value=6.1e-24 Score=253.61 Aligned_cols=363 Identities=15% Similarity=0.143 Sum_probs=217.0
Q ss_pred ccCCCccccceeechhHHHHHhcCC-----CCCCceEEEEEecCcccCCCchHHHhhhcc---CCCCCccccEEEEEEeC
Q 002323 362 NPSHLEAVDPVVVGKTRAKQYYSHD-----VDRTKNMGVLIHGDGSFAGQGVVYETLHLS---ALPNYTTGGTIHIVVNN 433 (936)
Q Consensus 362 NPSHLeav~PVa~G~ArA~q~~~~d-----~~~~~~v~v~~hGDgA~sGQGvv~EtLNlA---~LP~Y~~GGtIhIV~NN 433 (936)
...|+|...|.|+|+|+|.++.+.. .+-.+..++|+.|||++. +|.++|+||+| +|| =+|+||.||
T Consensus 114 ~tG~lG~gl~~AvG~AlA~~~~~~~~~~~~~~~~d~~v~~i~GDG~l~-eG~~~Eal~~A~~~~L~-----~livi~dnN 187 (663)
T 3kom_A 114 TTGPLGQGVANAVGMALGEKLLSDRYNTPDLKVIDHHTYVFLGDGCLM-EGVSHEACSLAGTLGLN-----KLVAFWDDN 187 (663)
T ss_dssp CCCSTTHHHHHHHHHHHHHHHHHHHHCBTTBCSCCCCEEEEECHHHHH-SHHHHHHHHHHHHHTCT-----TEEEEEEEC
T ss_pred CCcchhhHHHHHHHHHHhHHhhcccccccccccCCCeEEEEECchhhh-hchHHHHHHHHHHhCCC-----eEEEEEECC
Confidence 4567999999999999999876530 011137899999999999 99999999999 886 278999999
Q ss_pred CcccccCCCCCCCcchhh-------------H-HHHHHHHHHHHHHHc-cCCCEEEEEEeeecCCCCCCCC-CC----CC
Q 002323 434 QVAFTTDPRAGRSSQYCT-------------D-AVVHVCELAAEWRQK-FHSDVVVDLVCYRRFGHNEIDE-PS----FT 493 (936)
Q Consensus 434 QigfTT~~~~~rss~y~t-------------D-AV~~a~~~A~e~rr~-f~~pvlIdlv~YRr~GHne~Dd-p~----yt 493 (936)
+|+++++........+.. | -=..+...|++.+++ .++|+||++.|+|-+||....+ +. --
T Consensus 188 ~~~i~~~~~~~~~~d~~~~~~a~G~~~~~~vdG~d~~~l~~al~~A~~~~~~P~lI~~~T~kg~G~~~~e~~~~~Hg~~l 267 (663)
T 3kom_A 188 NISIDGDTKGWFSDNTPERFRAYGWHVIENVDGHDFVAIEKAINEAHSQQQKPTLICCKTVIGFGSPEKAGTASVHGSPL 267 (663)
T ss_dssp C-----CGGGTCCCCHHHHHHHTTCEEEEEEETTCHHHHHHHHHHHHHCSSSCEEEEEECCTTTTCTTTTTCSSTTSSCC
T ss_pred CcccccchhhhcchhHHHHHHHCCCeEEEEEcCCCHHHHHHHHHHHHhcCCCCEEEEEecccccccCCCCCCccccCCCC
Confidence 999998765433221110 1 011333444555555 6899999999999999986433 22 23
Q ss_pred CHHHHHHHHc----CCCHHHHHHHHHHHcCCCCHHHHHHHHH-----HHHHHHHHHHHHhhhcCCCccchhhhhccCCCC
Q 002323 494 QPKMYQVIRS----HPSAFEIYQKKLLESAQVTQEDINRIQE-----KVNTILNEEFMASKDYVPKRRDWLSAYWAGFKS 564 (936)
Q Consensus 494 qp~~y~~i~~----~~dpl~~y~~~Li~eGilt~eei~~i~~-----~~~~~l~~a~~~A~~~~p~~~~~~~~~w~~~~~ 564 (936)
.+++++..++ +.+|.. +.++..+.+++ ...+..++.+...++. | ....+...++
T Consensus 268 ~~e~~~~~~~~l~~~~~pf~-----------~~~~~~~~~~~~~~g~~~~~~w~~~~~~~~~~-p-~~~~~~~~~~---- 330 (663)
T 3kom_A 268 SDQERASAAKELNWDYQAFE-----------IPQDVYKYWDAREKGQALEANWQGQRNLFKDS-P-KFDEFERVLS---- 330 (663)
T ss_dssp CHHHHHHHHHHTTCCCCTTC-----------CCHHHHHHHCCHHHHHHHHHHHHHHHHHHTTS-T-THHHHHHHHH----
T ss_pred CHHHHHHHHHHcCCCCCCcc-----------CChhHHHHHHHHhhcchhhHHHHHHHHHhhcc-h-HHHHHHHHhc----
Confidence 4566665432 122321 11211111111 0111111222211111 2 1111111111
Q ss_pred cccccccCCCCCChHHHHHHHHHhccCCCCCCchhHHHHHHHHHHHHHhcCCccc--HHHHHHHHhhhhhhcCCcEEEec
Q 002323 565 PEQVSRIRNTGVKPEILKNVGKAITNLPENFKPHRGVKKVYEQRAQMIETGEGID--WAVGEALAFATLLVEGNHVRLSG 642 (936)
Q Consensus 565 ~~~~~~~~~Tgv~~~~l~~i~~~~~~~P~~f~~h~~l~r~l~~R~~~~~~~~~iD--Wa~aE~LAfgsLl~eg~~Vrl~G 642 (936)
..+|+++. ..+.+.+. ++.+.++.+. =|..++ ...++....+|.+.|
T Consensus 331 ------------------------~~~p~~~~--~~~~~~~~---~~~~~~~~~a~r~a~~~a--L~~~~~~~p~vv~~~ 379 (663)
T 3kom_A 331 ------------------------KELPVGLE--SAINDYIA---SQLSNPVKVATRKASQMV--LEVLCKNMPEMFGGS 379 (663)
T ss_dssp ------------------------TCCCTTHH--HHHHHHHH---HHHHSCCCEEHHHHHHHH--HHHHHHHCTTEEEEE
T ss_pred ------------------------cCCCcchh--hhhhhhhh---hhhccCcchhHHHHHHHH--HHHHHhhCCCEEEEe
Confidence 01222110 01111110 1111122211 122223 235667788999999
Q ss_pred ccCCC--cc-cccccceeeecCCCceeecCCCCcccCCCcceEEEccCcchhHHHHHHhhhccC-CCCcceeeeccchhh
Q 002323 643 QDVER--GT-FSHRHSVLHDQETGEKYCPLDHVMMNQDEEMFTVSNSSLSEFGVLGFELGYSME-NPNSLVLWEAQFGDF 718 (936)
Q Consensus 643 qDv~r--Gt-F~~RHavl~dq~t~~~y~pL~~l~~~~~~g~~rV~nspLSE~avlG~e~G~sl~-g~~~LviwEaqFgDF 718 (936)
+|+.. ++ |+. | .++.. +++ +.|++|++|+|.+++|++.|+|+. |.+| +++. |.+|
T Consensus 380 aDl~~s~~~~~~~---------~-------~~f~~-~~~-p~R~~d~GIaE~~~v~~a~GlA~~gG~~P--~~~t-f~~F 438 (663)
T 3kom_A 380 ADLTGSNNTNWSG---------S-------VWLNN-TQE-GANYLSYGVREFGMAAIMNGLSLYGGIKP--YGGT-FLVF 438 (663)
T ss_dssp CCC--CCSCCCTT---------C-------CBTTT-CST-TCCEEECCSCHHHHHHHHHHHHHHSSCEE--EEEE-EGGG
T ss_pred cccCCCCCccccc---------c-------ccccc-ccC-CCCeEecCccHHHHHHHHHHHHHcCCCEE--EEEe-hHHH
Confidence 99974 22 333 4 55631 445 789999999999999999999999 9999 8887 8888
Q ss_pred hhhHHHHHHHHHhhhhhhhcCccccEEEcCc-cC-CC-CCccccCchhhhhhhcCCCCCCcccCCCchhhhhccccceEE
Q 002323 719 ANGAQVIFDQFLSSGESKWLRQTGLVVLLPH-GY-DG-QGPEHSSARLERFLQMSDDNPFVIPEMDPTLRKQIQECNWQI 795 (936)
Q Consensus 719 ~n~Aq~iidqfi~~~~~kw~~~s~lv~~lPh-G~-~G-~GpeHSs~RiERfLQl~~~~~~~~~~~pg~~~~~~~~~N~~V 795 (936)
+.-++.+|.. .+ ....|+|+++.| |+ .| .||.|.+- +|..++.++|| |+|
T Consensus 439 ~~~~~~~ir~---~a----~~~lpvv~~~t~~g~g~G~dG~THq~~----------ed~a~lr~iPn----------l~V 491 (663)
T 3kom_A 439 SDYSRNAIRM---SA----LMKQPVVHVMSHDSIGLGEDGPTHQPI----------EHVPSLRLIPN----------LSV 491 (663)
T ss_dssp HHHHHHHHHH---HH----HTTCCCEEEEECCSGGGCTTCTTTCCS----------SHHHHHHTSTT----------CEE
T ss_pred HHHHHHHHHH---HH----hcCCCEEEEEeCCccccCCCCCCcCCH----------HHHHHHhcCCC----------cEE
Confidence 8666544421 11 236899999755 43 34 58999543 34467788996 999
Q ss_pred EEcCCHHHHHHHHHHHHhcCCCCcEEEEcccc
Q 002323 796 VNVTTPANYFHVLRRQIHRGFRKPLIVISPKN 827 (936)
Q Consensus 796 v~pstpa~~fhlLrrq~~r~~~~Pli~~~pK~ 827 (936)
+.|++|.+++++|+.++.+ .++|++|..|+.
T Consensus 492 ~~Pad~~e~~~~l~~A~~~-~~~Pv~ir~~r~ 522 (663)
T 3kom_A 492 WRPADTIETMIAWKEAVKS-KDTPSVMVLTRQ 522 (663)
T ss_dssp ECCCSHHHHHHHHHHHHHC-SSCCEEEECCSS
T ss_pred EeeCCHHHHHHHHHHHHHh-CCCCEEEEccCc
Confidence 9999999999999999973 579999998864
No 26
>1w85_B Pyruvate dehydrogenase E1 component, beta subunit; dehydrogenase, multienzyme complex, oxidoreductase; HET: TDP; 2.0A {Geobacillus stearothermophilus} SCOP: c.36.1.7 c.48.1.2 PDB: 1w88_B* 3dva_B* 3dv0_B* 3duf_B*
Probab=99.92 E-value=1.4e-24 Score=238.90 Aligned_cols=204 Identities=20% Similarity=0.223 Sum_probs=161.1
Q ss_pred HhhhhhhcCCcEEEecccCCC--cccccccceeeecCCCceeecCCCCcccCCCcceEEEccCcchhHHHHHHhhhccCC
Q 002323 627 AFATLLVEGNHVRLSGQDVER--GTFSHRHSVLHDQETGEKYCPLDHVMMNQDEEMFTVSNSSLSEFGVLGFELGYSMEN 704 (936)
Q Consensus 627 AfgsLl~eg~~Vrl~GqDv~r--GtF~~RHavl~dq~t~~~y~pL~~l~~~~~~g~~rV~nspLSE~avlG~e~G~sl~g 704 (936)
+...|+.++.+|++.|+|+++ |||+. + +++. +++|+.|++|++|||.+++|+++|+|+.|
T Consensus 12 ~L~~l~~~~~~vv~~~~d~~~~~g~~~~---------~-------~~~~--~~~gp~r~~~~gIaE~~~v~~a~G~A~~G 73 (324)
T 1w85_B 12 ALRIELKNDPNVLIFGEDVGVNGGVFRA---------T-------EGLQ--AEFGEDRVFDTPLAESGIGGLAIGLALQG 73 (324)
T ss_dssp HHHHHHHHCTTEEEEETTCSTTCCTTST---------T-------TTHH--HHHCTTTEEECCSCHHHHHHHHHHHHHTT
T ss_pred HHHHHHhHCcCEEEEcCcccccCCcchh---------H-------HHHH--HHhCCCcEEEcchhHHHHHHHHHHHHhCC
Confidence 345788999999999999987 88876 5 7888 77889999999999999999999999999
Q ss_pred CCcceeeeccchhhhhhHHHHHHHHHhhh-hhhhc----CccccEEEcCccCCCCCccccCchhhhhhhcCCCCCCcccC
Q 002323 705 PNSLVLWEAQFGDFANGAQVIFDQFLSSG-ESKWL----RQTGLVVLLPHGYDGQGPEHSSARLERFLQMSDDNPFVIPE 779 (936)
Q Consensus 705 ~~~LviwEaqFgDF~n~Aq~iidqfi~~~-~~kw~----~~s~lv~~lPhG~~G~GpeHSs~RiERfLQl~~~~~~~~~~ 779 (936)
.+| +|++||++|+.-| +||++... ..+|. ...|+|+++|+|+.|.|+.|+|...++|++ +
T Consensus 74 ~rp--~~~~t~~~F~~~a---~dqi~~~~a~~~~~~~g~~~~pvv~~~~~g~~~~~g~~hs~~~~a~~~----------~ 138 (324)
T 1w85_B 74 FRP--VPEIQFFGFVYEV---MDSICGQMARIRYRTGGRYHMPITIRSPFGGGVHTPELHSDSLEGLVA----------Q 138 (324)
T ss_dssp CEE--EEBCSSGGGGGGT---HHHHHTTGGGHHHHTTTSSCCCCEEEEEECSSSCCCTTSSCCCHHHHT----------T
T ss_pred CEE--EEEecchhHHHHH---HHHHHHHHHHHhhhccCCCcCCEEEEEeccCCCCCCCcccccHHHHHc----------c
Confidence 988 9999999998554 89998644 23466 678999999999977666555556677654 5
Q ss_pred CCchhhhhccccceEEEEcCCHHHHHHHHHHHHhcCCCCcEEEEccccccCCCCCCCCcccccccCCCCCCCCCCCceeE
Q 002323 780 MDPTLRKQIQECNWQIVNVTTPANYFHVLRRQIHRGFRKPLIVISPKNLLRHKDCKSNLSEFDDVQGHPGFDKQGTRFKR 859 (936)
Q Consensus 780 ~pg~~~~~~~~~N~~Vv~pstpa~~fhlLrrq~~r~~~~Pli~~~pK~Llr~~~~~S~l~ef~~~~~~~~~~~pg~~F~~ 859 (936)
+|| |+|+.|+||.+++++|+.+++ +++|++|++||.|+|.+....+-+++. .+-|+++.
T Consensus 139 iP~----------l~V~~Psd~~e~~~~l~~a~~--~~~Pv~i~~p~~l~r~~~~~~~~~~~~---------~~~Gk~~~ 197 (324)
T 1w85_B 139 QPG----------LKVVIPSTPYDAKGLLISAIR--DNDPVIFLEHLKLYRSFRQEVPEGEYT---------IPIGKADI 197 (324)
T ss_dssp STT----------CEEECCSSHHHHHHHHHHHHH--SSSCEEEEEETTTSSSCCEECCSSCCC---------CCTTCCEE
T ss_pred CCC----------CEEEeeCCHHHHHHHHHHHHH--cCCCEEEEechHhcCCCCCCCCCcccc---------ccCCceEE
Confidence 664 999999999999999999997 889999999999998743322212221 12344544
Q ss_pred eecCCCCCCCCCCCccEEEEeCchhHHHHHHhhcc
Q 002323 860 LIKDQNGHSDLEEGIRRLVLCSGKVFITSLMKGGR 894 (936)
Q Consensus 860 vi~d~~~~~~~~~~v~rvilcsGkvyydL~~~r~~ 894 (936)
+.++ -+.+|+|+|..++..+++.++
T Consensus 198 ~~~g----------~dv~iva~G~~~~~a~~Aa~~ 222 (324)
T 1w85_B 198 KREG----------KDITIIAYGAMVHESLKAAAE 222 (324)
T ss_dssp EECC----------SSEEEEECTTHHHHHHHHHHH
T ss_pred EecC----------CCEEEEEecHHHHHHHHHHHH
Confidence 4321 246999999999998877653
No 27
>3uk1_A Transketolase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, thiamine pyrophosphate; 2.15A {Burkholderia thailandensis} PDB: 3upt_A*
Probab=99.91 E-value=1.7e-23 Score=251.01 Aligned_cols=364 Identities=14% Similarity=0.130 Sum_probs=209.1
Q ss_pred cCCCccccceeechhHHHHHhcC-----CCCCCceEEEEEecCcccCCCchHHHhhhcc---CCCCCccccEEEEEEeCC
Q 002323 363 PSHLEAVDPVVVGKTRAKQYYSH-----DVDRTKNMGVLIHGDGSFAGQGVVYETLHLS---ALPNYTTGGTIHIVVNNQ 434 (936)
Q Consensus 363 PSHLeav~PVa~G~ArA~q~~~~-----d~~~~~~v~v~~hGDgA~sGQGvv~EtLNlA---~LP~Y~~GGtIhIV~NNQ 434 (936)
..|+|...|.|+|+|+|.++.+. +.+-.+..++|+.|||++. +|.++|+||+| +|| =+|+||.||+
T Consensus 154 tG~lG~gl~~AvG~AlA~~~~~~~~n~~~~~~~d~~vv~i~GDG~l~-eG~~~Eal~~A~~~~L~-----~livI~dnN~ 227 (711)
T 3uk1_A 154 TGPLGQGLANAVGMALGEALLAAEFNRDDAKIVDHHTYVFLGDGCLM-EGISHEACSLAGTLKLN-----KLIALYDDNG 227 (711)
T ss_dssp CCSTTHHHHHHHHHHHHHHHHHHHHCBTTBCCCCCCEEEEECHHHHH-SHHHHHHHHHHHHTTCT-----TEEEEEEECS
T ss_pred ccchhhHHHHHHHHHHHHHhhcccccccccccCCCeEEEEECCcchh-hccHHHHHHHHHHhCCC-----cEEEEEECCC
Confidence 45699999999999999987652 1011136899999999999 99999999999 785 3899999999
Q ss_pred cccccCCCCCCCcchh-----------h--H-HHHHHHHHHHHHHHccCCCEEEEEEeeecCCCCCC-CCCCCC----CH
Q 002323 435 VAFTTDPRAGRSSQYC-----------T--D-AVVHVCELAAEWRQKFHSDVVVDLVCYRRFGHNEI-DEPSFT----QP 495 (936)
Q Consensus 435 igfTT~~~~~rss~y~-----------t--D-AV~~a~~~A~e~rr~f~~pvlIdlv~YRr~GHne~-Ddp~yt----qp 495 (936)
++++++........+. . | -=..+...|++.+++.++|+||++.|+|-+||... |...|- .+
T Consensus 228 ~~i~~~~~~~~~~d~~~~~~a~G~~~~~~vdG~d~~~l~~Al~~A~~~~~P~lI~v~T~kG~G~~~~e~~~~~Hg~~l~~ 307 (711)
T 3uk1_A 228 ISIDGDVVNWFHDDTPKRFEAYGWNVIPNVNGHDVDAIDAAIAKAKRSDKPSLICCKTRIGNGAATKAGGHDVHGAPLGA 307 (711)
T ss_dssp EETTEEGGGTCCCCHHHHHHHTTCEEEEEEETTCHHHHHHHHHHHTTCSSCEEEEEEC--------------------CH
T ss_pred cccccchhhhcCCCHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHHhCCCCEEEEEccccccCCCCCCCcccccCCCCCH
Confidence 9998876543222111 0 1 00233344444455678999999999999999743 333322 34
Q ss_pred HHHHHHHc----CCCHH----HHHHHH--HHHcCCCCHHHHHHHHHHHHHHHHHHHHHhhhcCCCccchhhhhccCCCCc
Q 002323 496 KMYQVIRS----HPSAF----EIYQKK--LLESAQVTQEDINRIQEKVNTILNEEFMASKDYVPKRRDWLSAYWAGFKSP 565 (936)
Q Consensus 496 ~~y~~i~~----~~dpl----~~y~~~--Li~eGilt~eei~~i~~~~~~~l~~a~~~A~~~~p~~~~~~~~~w~~~~~~ 565 (936)
++++..++ ..+|. +.|..+ + ++|. ..++++++.+.+ ++ +..|.....+....+
T Consensus 308 e~~~~~~~~l~~~~~pF~~~~~~~~~~~~~-~~g~-------~~~~~w~~~~~~-~~---~~~p~~a~~~~~~~~----- 370 (711)
T 3uk1_A 308 DEIAKTREALGWTWAPFVIPQEVYAAWDAK-EAGK-------RSEDDWNAAFAQ-YR---AKYPAEAAEFERRMA----- 370 (711)
T ss_dssp HHHHHHHHHHTCCCCTTCCCHHHHHHHCCH-HHHH-------HHHHHHHHHHHH-HH---HHCHHHHHHHHHHHH-----
T ss_pred HHHHHHHHHhCCCCCCccCChHHHHHHHHH-hccc-------hhHHHHHHHHHH-HH---hhChhhHHHHHHhhc-----
Confidence 45544332 11221 111111 1 1120 011111111111 10 000110000000000
Q ss_pred ccccccCCCCCChHHHHHHHHHhccCCCCCCchhHHHHHHHHHHHHHhcCCccc--HHHHHHHHhhhhhhcCCcEEEecc
Q 002323 566 EQVSRIRNTGVKPEILKNVGKAITNLPENFKPHRGVKKVYEQRAQMIETGEGID--WAVGEALAFATLLVEGNHVRLSGQ 643 (936)
Q Consensus 566 ~~~~~~~~Tgv~~~~l~~i~~~~~~~P~~f~~h~~l~r~l~~R~~~~~~~~~iD--Wa~aE~LAfgsLl~eg~~Vrl~Gq 643 (936)
..+|+++ ...+.+.+.+ +.+.++.+. =+..++ ...++....+|.+.++
T Consensus 371 -----------------------~~~p~~~--~~~~~~~~~~---~~~~~~~~atR~A~~~~--L~~l~~~~p~vv~~~a 420 (711)
T 3uk1_A 371 -----------------------GTLPADW--AAKAAAIVAG---ANERGETVATRKASQQT--IEGLAAVLPELLGGSA 420 (711)
T ss_dssp -----------------------TCCCTTH--HHHHHHHHHH---HHHHCCCEEHHHHHHHH--HHHHHHHCTTEEEEES
T ss_pred -----------------------cCCCchH--HHHhhHhhhh---hhccccchhHHHHHHHH--HHHHHhhCCCEEEEec
Confidence 0112111 0000010000 001111111 112222 2356677889999999
Q ss_pred cCCC--ccc-ccccceeeecCCCceeecCCCCcccCC---Cc--ceEEEccCcchhHHHHHHhhhcc-CCCCcceeeecc
Q 002323 644 DVER--GTF-SHRHSVLHDQETGEKYCPLDHVMMNQD---EE--MFTVSNSSLSEFGVLGFELGYSM-ENPNSLVLWEAQ 714 (936)
Q Consensus 644 Dv~r--GtF-~~RHavl~dq~t~~~y~pL~~l~~~~~---~g--~~rV~nspLSE~avlG~e~G~sl-~g~~~LviwEaq 714 (936)
|+.. +|+ +. | ..+. ++ ++ ..|++|++|+|.+++|++.|+|+ .|.+| +++.
T Consensus 421 Dl~~s~~~~~~~---------~-------~~f~--~~~~~~p~~~~R~~d~GIaE~~mv~~AaGlA~~~G~~P--v~~~- 479 (711)
T 3uk1_A 421 DLTGSNLTNWKA---------S-------KAVR--ANADGPGVQWGNHINYGVREFGMSAAINGLVLHGGYKP--FGGT- 479 (711)
T ss_dssp SCHHHHTCCCTT---------C-------CBCE--ECSSSSSEECCSEEECCSCHHHHHHHHHHHHHHSSCEE--EEEE-
T ss_pred cccCcCCccccc---------c-------hhhh--hhhccCCCCCCcEEEeCccHHHHHHHHHHHHHcCCCEE--EEEE-
Confidence 9974 443 22 2 4555 44 53 27999999999999999999999 59999 7775
Q ss_pred chhhhhhHHHHHHHHHhhhhhhhcCccccEEEcCccC---CCCCccccCchhhhhhhcCCCCCCcccCCCchhhhhcccc
Q 002323 715 FGDFANGAQVIFDQFLSSGESKWLRQTGLVVLLPHGY---DGQGPEHSSARLERFLQMSDDNPFVIPEMDPTLRKQIQEC 791 (936)
Q Consensus 715 FgDF~n~Aq~iidqfi~~~~~kw~~~s~lv~~lPhG~---~G~GpeHSs~RiERfLQl~~~~~~~~~~~pg~~~~~~~~~ 791 (936)
|.+|+.-|..+|- .++ . ...|++++..|+. ..-||.|.+- +|..+|.++||
T Consensus 480 f~~F~~~~~~~ir---~~a--~--~~lpv~~v~thdg~gvG~dG~THq~~----------ed~a~lr~iPn--------- 533 (711)
T 3uk1_A 480 FLTFSDYSRNALR---VAA--L--MKVPSIFVFTHDSIGLGEDGPTHQSV----------EHVASLRLIPN--------- 533 (711)
T ss_dssp EGGGHHHHHHHHH---HHH--H--HTCCCEEEEECCSGGGCTTCTTTCCS----------SHHHHHHTSTT---------
T ss_pred hHHHHHHHHHHHH---Hhh--h--cCCCEEEEEECCCcCcCCCCCccCCh----------hHHHHHhcCCC---------
Confidence 8888865543332 222 1 2579999987643 3469999443 44467789996
Q ss_pred ceEEEEcCCHHHHHHHHHHHHhcCCCCcEEEEcccccc
Q 002323 792 NWQIVNVTTPANYFHVLRRQIHRGFRKPLIVISPKNLL 829 (936)
Q Consensus 792 N~~Vv~pstpa~~fhlLrrq~~r~~~~Pli~~~pK~Ll 829 (936)
|+|+.|++|.++.++|+.++. .+.|++|..|+.-+
T Consensus 534 -l~V~~Pad~~E~~~~l~~Ai~--~~~Pv~ir~~r~~~ 568 (711)
T 3uk1_A 534 -LDVWRPADTVETAVAWTYAVA--HQHPSCLIFSRQNL 568 (711)
T ss_dssp -CEEECCSSHHHHHHHHHHHHH--SSSCEEEECCSSEE
T ss_pred -CEEEecCCHHHHHHHHHHHHh--cCCCEEEEeeCCCC
Confidence 999999999999999999998 88999999887544
No 28
>2qtc_A Pyruvate dehydrogenase E1 component; thiamin diphosphate, glycolysis, MAG metal-binding, oxidoreductase, thiamine pyrophosphate; HET: TDK; 1.77A {Escherichia coli} SCOP: c.36.1.6 c.36.1.10 c.48.1.1 PDB: 2qta_A* 1l8a_A* 1rp7_A* 2g25_A* 2g28_A* 2g67_A 2iea_A* 3lpl_A* 3lq2_A* 3lq4_A*
Probab=99.81 E-value=6.2e-19 Score=215.75 Aligned_cols=417 Identities=13% Similarity=0.127 Sum_probs=225.7
Q ss_pred ccCCCccccceeechhHHHHHh--cCCCCCCceEEEEEecCcccCCCchHHHhhhcc---CCCCCccccEEEEEEeCCcc
Q 002323 362 NPSHLEAVDPVVVGKTRAKQYY--SHDVDRTKNMGVLIHGDGSFAGQGVVYETLHLS---ALPNYTTGGTIHIVVNNQVA 436 (936)
Q Consensus 362 NPSHLeav~PVa~G~ArA~q~~--~~d~~~~~~v~v~~hGDgA~sGQGvv~EtLNlA---~LP~Y~~GGtIhIV~NNQig 436 (936)
...|+|...+.|+|.|+|.++. ....++.+..+++++|||++. +|.++|+||+| +|+ -+|+||.||++.
T Consensus 190 ~tG~~G~g~s~AiG~A~a~~~l~~~~~~~~~~~~v~aviGDG~l~-eG~~~EAl~~A~~~~L~-----nli~Vvn~N~~s 263 (886)
T 2qtc_A 190 PTVSMGLGPIGAIYQAKFLKYLEHRGLKDTSKQTVYAFLGDGEMD-EPESKGAITIATREKLD-----NLVFVINCNLQR 263 (886)
T ss_dssp CCCSTTHHHHHHHHHHHHHHHHHHTTSCCCTTCCEEEEEETGGGG-SHHHHTTHHHHHHTTCT-----TEEEEEEECSBC
T ss_pred cccccCccHHHHHHHHHHhhhhcccccccCCCCEEEEEECCcccc-ccchHHHHHHHHHcCCC-----cEEEEEECCCcc
Confidence 4567999999999999999872 111122347899999999999 99999999999 773 299999999999
Q ss_pred cccCCCCCCC-cc---------------h---------------------------------------------------
Q 002323 437 FTTDPRAGRS-SQ---------------Y--------------------------------------------------- 449 (936)
Q Consensus 437 fTT~~~~~rs-s~---------------y--------------------------------------------------- 449 (936)
++.+...... .. -
T Consensus 264 i~~~v~~~~~~~~~l~~~~~~~G~~~~~v~~g~~~~~ll~~~~~~~l~~~~~~~~d~~~q~~~~~~g~~~r~~~F~~~~~ 343 (886)
T 2qtc_A 264 LDGPVTGNGKIINELEGIFEGAGWNVIKVMWGSRWDELLRKDTSGKLIQLMNETVDGDYQTFKSKDGAYVREHFFGKYPE 343 (886)
T ss_dssp SSSBSCTTSCHHHHHHHHHHHTTCEEEEECBCTTHHHHHHHCSSCHHHHHHHHCCHHHHHHHTTSCHHHHHHHTSTTSHH
T ss_pred cCCCccccccccHHHHHHHHhCCCCEEEEecchhHHHHHccCCchHHHHHHHhccchhhhhhhhccchHHHHhhcccchH
Confidence 9998765210 00 0
Q ss_pred -------------------hhH--HHHHHHHHHHHHHHccCCCEEEEEEeeecCCCCC--CCCCC-----CCCHHHHHHH
Q 002323 450 -------------------CTD--AVVHVCELAAEWRQKFHSDVVVDLVCYRRFGHNE--IDEPS-----FTQPKMYQVI 501 (936)
Q Consensus 450 -------------------~tD--AV~~a~~~A~e~rr~f~~pvlIdlv~YRr~GHne--~Ddp~-----ytqp~~y~~i 501 (936)
..| +++.|.+.|.+. .++|+||++.|++-+||.. .+... +.++++++.+
T Consensus 344 ~~~l~~~~~d~~i~~l~~dGhD~~~l~~a~~~A~~~---~~~PtlI~~~T~KG~G~~~~~e~~~~~H~~~~l~~~~~~~~ 420 (886)
T 2qtc_A 344 TAALVADWTDEQIWALNRGGHDPKKIYAAFKKAQET---KGKATVILAHTIKGYGMGDAAKGKNIAHQVKKMNMDGVRHI 420 (886)
T ss_dssp HHTTTTTCCHHHHHTCCBGGGCHHHHHHHHHHHHHC---CSSCEEEEEECCTTTTCTTCC-------------CHHHHHH
T ss_pred HHHHHhhcChhhHhhcccCCCCHHHHHHHHHHHHHc---CCCCEEEEEeeeeccccchhhcCCccccCCCCCCHHHHHHH
Confidence 012 777777777653 3589999999999999973 33322 4555666665
Q ss_pred HcCCCHHHHHHHHHHHcCCC-CHHHHHH--------HHHHHHHHHHHHHHHhhhcCCCccchhhhhccCCCCcccccccC
Q 002323 502 RSHPSAFEIYQKKLLESAQV-TQEDINR--------IQEKVNTILNEEFMASKDYVPKRRDWLSAYWAGFKSPEQVSRIR 572 (936)
Q Consensus 502 ~~~~dpl~~y~~~Li~eGil-t~eei~~--------i~~~~~~~l~~a~~~A~~~~p~~~~~~~~~w~~~~~~~~~~~~~ 572 (936)
+++ .|+- +++++++ ...+++...+. .+......|.....+. ...
T Consensus 421 r~~-------------~~~~~~~e~~~~~~f~~~~~~~~~~~~~~~r-~~~l~g~~p~~~~~~~---~~~---------- 473 (886)
T 2qtc_A 421 RDR-------------FNVPVSDADIEKLPYITFPEGSEEHTYLHAQ-RQKLHGYLPSRQPNFT---EKL---------- 473 (886)
T ss_dssp HHH-------------TTCSCCHHHHTTCCCCCCCTTSHHHHHHHHH-HHHTTSCSSCCCCSCC---SCC----------
T ss_pred HHH-------------cCCCCChhhhccccccCCccchHHHHHHHHH-HHHhcccCcchhhhhh---hcc----------
Confidence 531 1221 1111100 01111111111 0011111121100000 000
Q ss_pred CCCCChHHHHHHHHHhccCCCCCCchhHHHHHHHHHHHHHhcCCcccHHHHHHHHhhhhhhcC---CcEEEecccCCC--
Q 002323 573 NTGVKPEILKNVGKAITNLPENFKPHRGVKKVYEQRAQMIETGEGIDWAVGEALAFATLLVEG---NHVRLSGQDVER-- 647 (936)
Q Consensus 573 ~Tgv~~~~l~~i~~~~~~~P~~f~~h~~l~r~l~~R~~~~~~~~~iDWa~aE~LAfgsLl~eg---~~Vrl~GqDv~r-- 647 (936)
.+|+ + +.....+ ...+..+.|-.+=.-+...|+.++ .+|+....|+.+
T Consensus 474 -----------------~~p~-~---~~~~~~~------~~~~~~~atr~afg~~L~~l~~~~~~~~~iV~i~pd~~~~~ 526 (886)
T 2qtc_A 474 -----------------ELPS-L---QDFGALL------EEQSKEISTTIAFVRALNVMLKNKSIKDRLVPIIADEARTF 526 (886)
T ss_dssp -----------------CCCC-G---GGGHHHH------SCCSSCBCHHHHHHHHHHHHTTCTTTTTTEEEEESSCSGGG
T ss_pred -----------------cCCc-h---hhhhhhc------cCCCCcchHHHHHHHHHHHHHhhcccCCcEEEEcCcccccc
Confidence 0111 0 0000000 001111222111111122344444 788888888654
Q ss_pred cc---cccccceeeecCCCceeecCC-C---CcccCCCcceEEEccCcchhH-HH---HHHhhhccCC--CCcceeeecc
Q 002323 648 GT---FSHRHSVLHDQETGEKYCPLD-H---VMMNQDEEMFTVSNSSLSEFG-VL---GFELGYSMEN--PNSLVLWEAQ 714 (936)
Q Consensus 648 Gt---F~~RHavl~dq~t~~~y~pL~-~---l~~~~~~g~~rV~nspLSE~a-vl---G~e~G~sl~g--~~~LviwEaq 714 (936)
|+ |.. .-++. .++..|.|-. + .. .+..+.|++|++|+|.+ +. |++.|||+.| .+|.+ +.
T Consensus 527 G~~dl~~S--~~i~~-~~~~~f~~~d~~~~~~~--~e~~~~R~~d~GIaE~~a~~~~~g~a~GlA~~G~~~~P~~---~~ 598 (886)
T 2qtc_A 527 GMEGLFRQ--IGIYS-PNGQQYTPQDREQVAYY--KEDEKGQILQEGINELGAGCSWLAAATSYSTNNLPMIPFY---IY 598 (886)
T ss_dssp TCHHHHHH--HCBBC-C-------------------CBTTCCBEECCSCHHHHHHHHHHHHTHHHHTSCCCEEEE---EE
T ss_pred Cccccccc--ccccc-cCCcccccccchhhhhh--hhcCCCceeeeccCchhhhhHHHHHHHHHHhcCCCceEEE---EE
Confidence 32 111 00000 1334444311 0 01 13347899999999999 56 8999999999 68843 34
Q ss_pred chhhhhhHHHHHHHHHhhhhhhhcCccccEEEcCc----cCCCCCccccCchhhhhhhcCCCCCCcccCCCchhhhhccc
Q 002323 715 FGDFANGAQVIFDQFLSSGESKWLRQTGLVVLLPH----GYDGQGPEHSSARLERFLQMSDDNPFVIPEMDPTLRKQIQE 790 (936)
Q Consensus 715 FgDF~n~Aq~iidqfi~~~~~kw~~~s~lv~~lPh----G~~G~GpeHSs~RiERfLQl~~~~~~~~~~~pg~~~~~~~~ 790 (936)
|..|. -|-.+||+.....+ +..-+++..+ ++.+-||+|++- ++..++.++||
T Consensus 599 ys~F~--~qRa~Dqi~~~~d~----~~~~v~l~~~~~~~~~g~dG~tHq~~----------~~~a~lr~iPn-------- 654 (886)
T 2qtc_A 599 YSMFG--FQRIGDLCWAAGDQ----QARGFLIGGTSGRTTLNGEGLQHEDG----------HSHIQSLTIPN-------- 654 (886)
T ss_dssp EGGGS--HHHHHHHHHHHHHT----TCCCEEEEESCSTTTSTTTCTTTCCS----------CHHHHHTTSTT--------
T ss_pred ehHHH--HHHHHHHHHHHHHH----hcCCEEEEEecCcccCCCCCCccCCc----------chHHHHhhCCC--------
Confidence 45553 36668998876533 2222333222 335679999863 22346778895
Q ss_pred cceEEEEcCCHHHHHHHHHHHHhcCCCCc----EEEEccccc--cCCCCCCCCc-ccccccCCCCCCCCCCCceeEeecC
Q 002323 791 CNWQIVNVTTPANYFHVLRRQIHRGFRKP----LIVISPKNL--LRHKDCKSNL-SEFDDVQGHPGFDKQGTRFKRLIKD 863 (936)
Q Consensus 791 ~N~~Vv~pstpa~~fhlLrrq~~r~~~~P----li~~~pK~L--lr~~~~~S~l-~ef~~~~~~~~~~~pg~~F~~vi~d 863 (936)
|+|+.|+++.++.++|+.++++. +.| +++..++.. +.++.-.... +.+. |+.. |+.+
T Consensus 655 --l~V~~Pada~E~~~~l~~al~~~-~gP~~e~v~i~~~r~~~~~~~p~~~~~~~~~~~-----------gga~--vlr~ 718 (886)
T 2qtc_A 655 --CISYDPAYAYEVAVIMHDGLERM-YGEKQENVYYYITTLNENYHMPAMPEGAEEGIR-----------KGIY--KLET 718 (886)
T ss_dssp --EEEECCSSHHHHHHHHHHHHHHH-HSTTCCCCEEEEECCSCCBCCCCCCTTCHHHHH-----------HTCE--EEEE
T ss_pred --CEEEecCCHHHHHHHHHHHHHhc-CCCCCceEEEEEeCCccccCCCCCCcchhhhcc-----------CceE--EEEe
Confidence 99999999999999999999842 358 888888654 4332110011 1111 1221 2222
Q ss_pred CCCCCCCCCCccEEEEeCchhHHHHHHhhcc
Q 002323 864 QNGHSDLEEGIRRLVLCSGKVFITSLMKGGR 894 (936)
Q Consensus 864 ~~~~~~~~~~v~rvilcsGkvyydL~~~r~~ 894 (936)
.. .++-+-+|+|+|-+....+++.+.
T Consensus 719 g~-----~~~~dVtLia~G~~v~~al~AAe~ 744 (886)
T 2qtc_A 719 IE-----GSKGKVQLLGSGSILRHVREAAEI 744 (886)
T ss_dssp EC-----CSSEEEEEEECGGGHHHHHHHHHH
T ss_pred cC-----CCCCCEEEEeCcHHHHHHHHHHHH
Confidence 10 011245899999998887776643
No 29
>4feg_A Pyruvate oxidase; carbanion, structure activity relationship, oxidation-reduct umpolung, thiamine diphosphate, reaction intermediate; HET: TDM FAD GOL; 1.09A {Lactobacillus plantarum} PDB: 4fee_A* 1y9d_A* 2ez9_A* 2ez4_A* 2ez8_A* 2ezt_A* 2ezu_A* 1pow_A* 1pox_A*
Probab=99.10 E-value=4.9e-11 Score=141.16 Aligned_cols=142 Identities=13% Similarity=0.115 Sum_probs=96.0
Q ss_pred CccccceeechhHHHHHhcCCCCCCceEEEEEecCcccCCCchHHHhhhcc---CCCCCccccEEEEEEeCC-cccccC-
Q 002323 366 LEAVDPVVVGKTRAKQYYSHDVDRTKNMGVLIHGDGSFAGQGVVYETLHLS---ALPNYTTGGTIHIVVNNQ-VAFTTD- 440 (936)
Q Consensus 366 Leav~PVa~G~ArA~q~~~~d~~~~~~v~v~~hGDgA~sGQGvv~EtLNlA---~LP~Y~~GGtIhIV~NNQ-igfTT~- 440 (936)
+|...|.|+|+++|.+ + ..+|++.|||+|. +| .+.|+.+ +|| +++||.||+ ||+.+.
T Consensus 422 ~G~~l~~A~Gaala~~----~-----~~vv~~~GDG~~~-~~--~~~l~~a~~~~lp------~~~vv~nN~~~~~~~~~ 483 (603)
T 4feg_A 422 MGVGIPGAIAAKLNYP----E-----RQVFNLAGDGGAS-MT--MQDLATQVQYHLP------VINVVFTNCQYGFIKDE 483 (603)
T ss_dssp TTCHHHHHHHHHHHCT----T-----SCEEEEEEHHHHH-HH--GGGHHHHHHTTCC------CEEEEEECSBCHHHHHH
T ss_pred ccchhHHHhhHHHhCC----C-----CcEEEEeccHHHh-hh--HHHHHHHHHHCcC------eEEEEEECCchHHHHHH
Confidence 7788888888888743 2 4689999999997 87 5558877 999 999999996 886321
Q ss_pred ---------CCCC-CCcchhh--H---------HHHHHHHHHHHHHH--ccCCCEEEEEEe---eecCCCCCCCCCC-CC
Q 002323 441 ---------PRAG-RSSQYCT--D---------AVVHVCELAAEWRQ--KFHSDVVVDLVC---YRRFGHNEIDEPS-FT 493 (936)
Q Consensus 441 ---------~~~~-rss~y~t--D---------AV~~a~~~A~e~rr--~f~~pvlIdlv~---YRr~GHne~Ddp~-yt 493 (936)
.... ....|.. . .-....+.|++.++ +.++|+|||++| ||.-+|...|++. |+
T Consensus 484 ~~~~~~~~~~~~~~~~~d~~~~a~a~G~~~~~v~~~~~l~~al~~a~~~~~~gP~lIev~~~~~~~~~~~~~~~~~~~~~ 563 (603)
T 4feg_A 484 QEDTNQNDFIGVEFNDIDFSKIADGVHMQAFRVNKIEQLPDVFEQAKAIAQHEPVLIDAVITGDRPLPAEKLRLDSAMSS 563 (603)
T ss_dssp HHHHCSSCCCSSBCCCCCHHHHHHHTTCEEEEECBGGGHHHHHHHHHHHTTTSCEEEEEECCCCCCCCTTSCCCCTTTSC
T ss_pred HHHhcCCCcccCcCCCCCHHHHHHHCCCeEEEECCHHHHHHHHHHHHHhcCCCcEEEEEEeCCCCCCCcccchhhhhhhh
Confidence 1000 0111110 0 01112334444444 789999999999 7777999998887 76
Q ss_pred CHH--HHHHHHcCCCHHHHHHHHHHHcCCCCHHHH
Q 002323 494 QPK--MYQVIRSHPSAFEIYQKKLLESAQVTQEDI 526 (936)
Q Consensus 494 qp~--~y~~i~~~~dpl~~y~~~Li~eGilt~eei 526 (936)
..+ +++.++ ++||+.+|+++|.++|++++++.
T Consensus 564 ~~~~~~~~~~~-~~d~~~~~~~~l~~~g~~~~~~~ 597 (603)
T 4feg_A 564 AADIEAFKQRY-EAQDLQPLSTYLKQFGLDDLQHQ 597 (603)
T ss_dssp HHHHHHHHHHH-TCTTCCCHHHHHHHTTC------
T ss_pred HHHHHHHHhhC-CcccCCchHHHHHHcCCchhhhh
Confidence 554 555666 48999999999999999988753
No 30
>1yd7_A 2-keto acid:ferredoxin oxidoreductase subunit alpha; structural genomics, southeast collaboratory for structural genomics, secsg; 2.30A {Pyrococcus furiosus}
Probab=98.40 E-value=1.5e-07 Score=106.31 Aligned_cols=121 Identities=12% Similarity=0.157 Sum_probs=81.2
Q ss_pred eEEEccCcchhHHHHHHhhhccCCCCcceeeeccchhhhhhHHHHHHHHHhhhhhhhcCccccEEEcCccC-CC----CC
Q 002323 681 FTVSNSSLSEFGVLGFELGYSMENPNSLVLWEAQFGDFANGAQVIFDQFLSSGESKWLRQTGLVVLLPHGY-DG----QG 755 (936)
Q Consensus 681 ~rV~nspLSE~avlG~e~G~sl~g~~~LviwEaqFgDF~n~Aq~iidqfi~~~~~kw~~~s~lv~~lPhG~-~G----~G 755 (936)
.+++.+. ||.+.+|.++|+|+.|.|+ +|+.++.+|.+ + +|++...+ +...|+|++.+.+. .+ ..
T Consensus 65 ~~~i~~e-~E~~a~~~a~Gaa~aG~r~--~~~ts~~G~~~-~---~d~l~~aa----~~~~P~Vi~~~~~~~~~~g~~~~ 133 (395)
T 1yd7_A 65 GVVIQME-DEIASIAAAIGASWAGAKA--MTATSGPGFSL-M---QENIGYAV----MTETPVVIVDVQRSGPSTGQPTL 133 (395)
T ss_dssp CEEEECS-CHHHHHHHHHHHHHTTCCE--EEEEETTHHHH-H---TTTCC--------CCCCEEEEEEC-----------
T ss_pred cEEEEeC-CHHHHHHHHHHHHHhCCcE--EEEeCchHHHH-H---HHHHHHHH----hcCCCEEEEEeeCCCCCCCCCcc
Confidence 5677766 9999999999999999997 99999998876 4 57664322 45789999999765 32 34
Q ss_pred ccccCchhhhhhhcCCCCCCcccCCCchhhhhccccceEEEEcCCHHHHHHHHHHHHh--cCCCCcEEEEccccccCC
Q 002323 756 PEHSSARLERFLQMSDDNPFVIPEMDPTLRKQIQECNWQIVNVTTPANYFHVLRRQIH--RGFRKPLIVISPKNLLRH 831 (936)
Q Consensus 756 peHSs~RiERfLQl~~~~~~~~~~~pg~~~~~~~~~N~~Vv~pstpa~~fhlLrrq~~--r~~~~Pli~~~pK~Llr~ 831 (936)
++||+. ++ .+|.+.+ +.++.|+.|+||.+++++++.++. +.++.||+|++|+.+...
T Consensus 134 ~~~sd~-~~----------~~~~~~g--------~~g~~vl~p~~~qea~~l~~~A~~lA~~~~~PVi~~~~~~l~h~ 192 (395)
T 1yd7_A 134 PAQGDI-MQ----------AIWGTHG--------DHSLIVLSPSTVQEAFDFTIRAFNLSEKYRTPVILLTDAEVGHM 192 (395)
T ss_dssp ----------------------------------CCCCEEECCCSHHHHHHHHHHHHHHHHHHTSEEEEEECHHHHHC
T ss_pred cchhHH-HH----------HHhccCC--------CcceEEEeCCCHHHHHHHHHHHHHHHHHHCCCEEEEcchhHhCe
Confidence 677765 22 2334432 134999999999999999999983 237799999999987643
No 31
>3ahc_A Phosphoketolase, xylulose 5-phosphate/fructose 6-phosphate phospho; thiamine diphosphate-dependent enzyme, alpha-beta fold; HET: TPP 2PE; 1.70A {Bifidobacterium breve} PDB: 3ahd_A* 3ahe_A* 3ahf_A* 3ahj_A* 3ahi_A* 3ahh_A* 3ahg_A* 3ai7_A*
Probab=97.99 E-value=4.4e-05 Score=93.21 Aligned_cols=126 Identities=15% Similarity=0.172 Sum_probs=84.5
Q ss_pred eEEEccCcchhHHHHHHhhhccCCCCcceeeeccchhhhhhHHHHHHH----HHhh-hhhhhcCcc-ccEEEcCccC--C
Q 002323 681 FTVSNSSLSEFGVLGFELGYSMENPNSLVLWEAQFGDFANGAQVIFDQ----FLSS-GESKWLRQT-GLVVLLPHGY--D 752 (936)
Q Consensus 681 ~rV~nspLSE~avlG~e~G~sl~g~~~LviwEaqFgDF~n~Aq~iidq----fi~~-~~~kw~~~s-~lv~~lPhG~--~ 752 (936)
.|+++ -|+|.++.|+..||++.|..+++--=+-|..|.--+ ++| .-.+ .+.-|++.. ++.+++-|.. .
T Consensus 491 GR~i~-GI~Eh~M~gia~Glal~G~~~f~~t~atFl~~~~~a---~~q~akwiR~a~a~~~wr~~~~~v~~v~Th~si~~ 566 (845)
T 3ahc_A 491 GQVTE-QLSEHQCEGFLEAYLLTGRHGIWSSYESFVHVIDSM---LNQHAKWLEATVREIPWRKPISSVNLLVSSHVWRQ 566 (845)
T ss_dssp CSEEE-CSCHHHHHHHHHHHHHTTCEEEEEEEHHHHGGGHHH---HHHHHHHHHHHHHHCTTSCCCBCEEEEEESCGGGC
T ss_pred CcEee-eecHHHHHHHHHHHHhcCCCCceecchhhhchhhhH---HHHHHHHHHhhHHhhhhcccCCceEEEEeCCceee
Confidence 68999 999999999999999999877555445565555554 666 3233 455677654 5777777644 2
Q ss_pred C-CCccccCchhhhhhhcCCCCCCcccCCCchhhhhccccceEEEEcCCHHHHHHHHHHHHhcCCCCcEEEEccc
Q 002323 753 G-QGPEHSSARLERFLQMSDDNPFVIPEMDPTLRKQIQECNWQIVNVTTPANYFHVLRRQIHRGFRKPLIVISPK 826 (936)
Q Consensus 753 G-~GpeHSs~RiERfLQl~~~~~~~~~~~pg~~~~~~~~~N~~Vv~pstpa~~fhlLrrq~~r~~~~Pli~~~pK 826 (936)
| -||.|-.--+|-.+-+- .|-.+| ||.|+.|+.+.....+++.++.. ...|.+++..|
T Consensus 567 GeDGpTHQ~~e~~d~l~~~-----r~~~iP----------n~~V~~PaDanet~~a~~~al~~-~~~~~v~v~sR 625 (845)
T 3ahc_A 567 DHNGFSHQDPGVTSLLINK-----TFNNDH----------VTNIYFATDANMLLAISEKCFKS-TNKINAIFAGK 625 (845)
T ss_dssp TTTCGGGCCCTHHHHHGGG-----CCTTCC----------CEEEEECCSHHHHHHHHHHHHHC-BSCEEEEECCC
T ss_pred cCCCCCCCCcHHHHHHHHh-----hccCCC----------CeEEEeCCCHHHHHHHHHHHHHc-CCCeEEEEecC
Confidence 3 48999873223222110 011345 69999999999999999999982 23455555454
No 32
>2c42_A Pyruvate-ferredoxin oxidoreductase; 4Fe-4S, iron, iron-sulfur, iron-sulfur cluster, pyruvate catabolism, TPP-dependent enzyme; HET: TPP; 1.78A {Desulfovibrio africanus} SCOP: c.36.1.8 c.36.1.12 c.48.1.3 c.64.1.1 d.58.1.5 PDB: 1b0p_A* 1kek_A* 2c3o_A* 2c3p_A* 2c3u_A* 2c3y_A* 2c3m_A* 2pda_A* 2uza_A*
Probab=97.84 E-value=2.7e-05 Score=99.12 Aligned_cols=122 Identities=7% Similarity=-0.088 Sum_probs=89.7
Q ss_pred CCCcceEEEccCcchhHHHHHHhhhccCCCCcceeeeccchhhhhhHHHHHHHHHhhhhhhhcCccccEEEcCccC-CCC
Q 002323 676 QDEEMFTVSNSSLSEFGVLGFELGYSMENPNSLVLWEAQFGDFANGAQVIFDQFLSSGESKWLRQTGLVVLLPHGY-DGQ 754 (936)
Q Consensus 676 ~~~g~~rV~nspLSE~avlG~e~G~sl~g~~~LviwEaqFgDF~n~Aq~iidqfi~~~~~kw~~~s~lv~~lPhG~-~G~ 754 (936)
+.+|..+++..+.||.+.+|..+|+|++|-|+ +...-..-|. .+++.+-. ..+...|+||..+.+. .++
T Consensus 49 ~~~G~~~~v~~~esE~aA~~aaiGAa~aGaR~--~t~Ts~~Gl~----lm~e~l~~----~ag~~~P~Vi~va~R~g~~~ 118 (1231)
T 2c42_A 49 NIFGQTLTIREMQSEAGAAGAVHGALAAGALT--TTFTASQGLL----LMIPNMYK----ISGELLPGVFHVTARAIAAH 118 (1231)
T ss_dssp CTTSCCCEEEECSSHHHHHHHHHHHHHTTCCE--EEEECHHHHH----HHHHHHHH----HHHTTCCCEEEEEECCCCSS
T ss_pred hhcCCceEEEecCChHHHHHHHHHHHHcCChH--hhhccHHHHH----HHHHHHHH----HhCCCCCEEEEECCCCccCC
Confidence 45688889999999999999999999999999 4443222222 22344321 1123589999999764 332
Q ss_pred ----CccccCchhhhhhhcCCCCCCcccCCCchhhhhccccceEEEEcCCHHHHHHHHHHHHh--cCCCCcEEEEccccc
Q 002323 755 ----GPEHSSARLERFLQMSDDNPFVIPEMDPTLRKQIQECNWQIVNVTTPANYFHVLRRQIH--RGFRKPLIVISPKNL 828 (936)
Q Consensus 755 ----GpeHSs~RiERfLQl~~~~~~~~~~~pg~~~~~~~~~N~~Vv~pstpa~~fhlLrrq~~--r~~~~Pli~~~pK~L 828 (936)
.++||+. ++++.+| |.|+.|+||.++|+++..+.. ..++.|||+++++.+
T Consensus 119 glsi~~~hsd~--------------~~ar~~G----------~~vl~pss~QEa~dl~~~Af~lAek~~~PVi~~~Dg~~ 174 (1231)
T 2c42_A 119 ALSIFGDHQDI--------------YAARQTG----------FAMLASSSVQEAHDMALVAHLAAIESNVPFMHFFDGFR 174 (1231)
T ss_dssp SBCCSCCSHHH--------------HTTTTSS----------CEEEECCSHHHHHHHHHHHHHHHHHHCCCEEEEEETTT
T ss_pred CCcCCCchhhH--------------HHHhcCC----------cEEEECCCHHHHHHHHHHHHHHHHHcCCCEEEEecCcc
Confidence 4788764 2345566 999999999999999999832 238999999999998
Q ss_pred cCC
Q 002323 829 LRH 831 (936)
Q Consensus 829 lr~ 831 (936)
+.|
T Consensus 175 ~sh 177 (1231)
T 2c42_A 175 TSH 177 (1231)
T ss_dssp TTT
T ss_pred ccc
Confidence 877
No 33
>2pan_A Glyoxylate carboligase; thiamin-diphosphate (THDP), thimain-dependent enzymes, FAD, lyase; HET: FAD TDP 1PE; 2.70A {Escherichia coli}
Probab=97.76 E-value=7.7e-06 Score=96.95 Aligned_cols=101 Identities=23% Similarity=0.295 Sum_probs=73.8
Q ss_pred CCCccccceeechhHHHHHhcCCCCCCceEEEEEecCcccCCCchHHHhhhcc---CCCCCccccEEEEEEeCC-ccccc
Q 002323 364 SHLEAVDPVVVGKTRAKQYYSHDVDRTKNMGVLIHGDGSFAGQGVVYETLHLS---ALPNYTTGGTIHIVVNNQ-VAFTT 439 (936)
Q Consensus 364 SHLeav~PVa~G~ArA~q~~~~d~~~~~~v~v~~hGDgA~sGQGvv~EtLNlA---~LP~Y~~GGtIhIV~NNQ-igfTT 439 (936)
.++|...|.|+|++.|.+ + ..+|++.|||+|. .+ .+.|+.+ +|| +++||.||+ ||+++
T Consensus 442 G~~G~~l~~AiGaala~~----~-----~~vv~i~GDGs~~-~~--~~~L~ta~~~~l~------~~ivv~NN~~~~~~~ 503 (616)
T 2pan_A 442 GPLGWTIPAALGVCAADP----K-----RNVVAISGDFDFQ-FL--IEELAVGAQFNIP------YIHVLVNNAYLGLIR 503 (616)
T ss_dssp CCTTCHHHHHHHHHHHCT----T-----CEEEEEEEHHHHH-HT--GGGHHHHHHTTCC------CEEEEEECSBCHHHH
T ss_pred ccccchHHHHHHHHHhCC----C-----CcEEEEEcchhhh-CC--HHHHHHHHHhCCC------eEEEEEECCcchHHH
Confidence 448889999999999853 2 4689999999996 65 4566666 999 999999996 88753
Q ss_pred CC--------------CC--CCC-----cchhh---------------HHHHHHHHHHHHHHHccCCCEEEEEEeeecC
Q 002323 440 DP--------------RA--GRS-----SQYCT---------------DAVVHVCELAAEWRQKFHSDVVVDLVCYRRF 482 (936)
Q Consensus 440 ~~--------------~~--~rs-----s~y~t---------------DAV~~a~~~A~e~rr~f~~pvlIdlv~YRr~ 482 (936)
.. .. ... ..|.. +++..+.+.|+++.++.++|+|||+.|+|..
T Consensus 504 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~a~a~G~~~~~v~~~~el~~al~~a~~~~~~~~gp~lIev~~~~~~ 582 (616)
T 2pan_A 504 QSQRAFDMDYCVQLAFENINSSEVNGYGVDHVKVAEGLGCKAIRVFKPEDIAPAFEQAKALMAQYRVPVVVEVILERVT 582 (616)
T ss_dssp HHGGGGTCCCSCBCCCCCTTCGGGTTCCCCHHHHHHHTTCEEEEECSGGGHHHHHHHHHHHHHHHCSCEEEEEEBCSCC
T ss_pred HHHHHhcCCccccccccccccccCCCCCCCHHHHHHHcCCeEEEECCHHHHHHHHHHHHhhcccCCCcEEEEEEecccc
Confidence 20 00 000 11110 1788888888888777899999999999854
No 34
>1v5e_A Pyruvate oxidase; oxidoreductase, flavoprotein; HET: FAD; 1.60A {Aerococcus viridans} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 2dji_A* 1v5f_A* 1v5g_A*
Probab=97.76 E-value=1e-05 Score=95.60 Aligned_cols=99 Identities=21% Similarity=0.283 Sum_probs=72.3
Q ss_pred CCCccccceeechhHHHHHhcCCCCCCceEEEEEecCcccCCCchHHHhhhcc---CCCCCccccEEEEEEeC-Cccccc
Q 002323 364 SHLEAVDPVVVGKTRAKQYYSHDVDRTKNMGVLIHGDGSFAGQGVVYETLHLS---ALPNYTTGGTIHIVVNN-QVAFTT 439 (936)
Q Consensus 364 SHLeav~PVa~G~ArA~q~~~~d~~~~~~v~v~~hGDgA~sGQGvv~EtLNlA---~LP~Y~~GGtIhIV~NN-QigfTT 439 (936)
+.+|...|.|+|++.|.. + ..+|++.|||+|. .+ .+.|+.+ +|| +++||.|| +||++.
T Consensus 413 g~mG~~l~~AiGaala~~----~-----~~vv~i~GDG~~~-~~--~~~L~ta~~~~l~------~~ivv~NN~~~~~~~ 474 (590)
T 1v5e_A 413 ATMGIAIPGGLGAKNTYP----D-----RQVWNIIGDGAFS-MT--YPDVVTNVRYNMP------VINVVFSNTEYAFIK 474 (590)
T ss_dssp CCTTCHHHHHHHHHHHCT----T-----SCEEEEEEHHHHH-HH--GGGHHHHHHTTCC------CEEEEEECSSCTTGG
T ss_pred CcccChHHHHHHHHHhCC----C-----CeEEEEEechHHh-ch--HHHHHHHHHhCCC------CEEEEEECCchHHHH
Confidence 448999999999999853 2 4689999999997 76 3667666 999 99999988 688886
Q ss_pred CCCCC----CC------cchhh---------------HHHHHHHHHHHHHHHccCCCEEEEEEeeec
Q 002323 440 DPRAG----RS------SQYCT---------------DAVVHVCELAAEWRQKFHSDVVVDLVCYRR 481 (936)
Q Consensus 440 ~~~~~----rs------s~y~t---------------DAV~~a~~~A~e~rr~f~~pvlIdlv~YRr 481 (936)
..... +. ..|.. +++..+.+.|++..++ ++|+|||+.|+|-
T Consensus 475 ~~q~~~~~~~~~~~~~~~d~~~~a~a~G~~~~~v~~~~el~~al~~a~~~~~~-~gp~liev~~~~~ 540 (590)
T 1v5e_A 475 NKYEDTNKNLFGVDFTDVDYAKIAEAQGAKGFTVSRIEDMDRVMAEAVAANKA-GHTVVIDCKITQD 540 (590)
T ss_dssp GTTSSSCCSCCCCCCCCCCHHHHHHHTTSEEEEECBHHHHHHHHHHHHHHHHT-TCCEEEEEECCSC
T ss_pred HHHHHhcCCCccccCCCCCHHHHHHHcCCEEEEECCHHHHHHHHHHHHHhcCC-CCCEEEEEEeccc
Confidence 42211 10 11110 1777777888776554 8999999999974
No 35
>1q6z_A BFD, BFDC, benzoylformate decarboxylase; lyase, carbon-carbon, mandelate catabolism, T thiazolone diphosphate, inhibitor, high resolution; HET: TZD; 1.00A {Pseudomonas putida} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1po7_A* 1pi3_A* 3fsj_X* 1mcz_A* 1bfd_A* 2fwn_A* 3fzn_A* 2fn3_A* 2v3w_A* 1yno_A* 3f6b_X* 3f6e_X*
Probab=97.74 E-value=7.7e-06 Score=95.06 Aligned_cols=99 Identities=15% Similarity=0.158 Sum_probs=71.0
Q ss_pred CCCccccceeechhHHHHHhcCCCCCCceEEEEEecCcccCCCchHHHhhhcc---CCCCCccccEEEEEEeCC-ccccc
Q 002323 364 SHLEAVDPVVVGKTRAKQYYSHDVDRTKNMGVLIHGDGSFAGQGVVYETLHLS---ALPNYTTGGTIHIVVNNQ-VAFTT 439 (936)
Q Consensus 364 SHLeav~PVa~G~ArA~q~~~~d~~~~~~v~v~~hGDgA~sGQGvv~EtLNlA---~LP~Y~~GGtIhIV~NNQ-igfTT 439 (936)
+++|...|.|+|+++|.. + ..+|++.|||+|. .| +|.|+.+ +|| +++||.||+ ||+++
T Consensus 401 g~~G~~l~~A~G~a~a~~----~-----~~vv~~~GDG~~~-~~--~~~l~~a~~~~l~------~~ivv~nN~~~~~~~ 462 (528)
T 1q6z_A 401 GGLGFALPAAIGVQLAEP----E-----RQVIAVIGDGSAN-YS--ISALWTAAQYNIP------TIFVIMNNGTYGALR 462 (528)
T ss_dssp CCTTSHHHHHHHHHHHCT----T-----SCEEEEEEHHHHT-TT--GGGHHHHHHHTCC------CEEEEEECSBCHHHH
T ss_pred ccccchHHHHHHHHHhCC----C-----CcEEEEECCcHHH-hh--HHHHHHHHHhCCC------eEEEEEeCCcchHhH
Confidence 779999999999999953 1 3589999999997 88 6778877 999 999999996 88865
Q ss_pred CCC------CC-----CCcchhh--H---------HHHHHHHHHHHHHHccCCCEEEEEEeee
Q 002323 440 DPR------AG-----RSSQYCT--D---------AVVHVCELAAEWRQKFHSDVVVDLVCYR 480 (936)
Q Consensus 440 ~~~------~~-----rss~y~t--D---------AV~~a~~~A~e~rr~f~~pvlIdlv~YR 480 (936)
... .. ....|.. . .-....+.|++.+.+.++|+|||+.|.|
T Consensus 463 ~~~~~~~~~~~~~~~~~~~d~~~~a~a~G~~~~~v~~~~~l~~al~~a~~~~gp~liev~~~~ 525 (528)
T 1q6z_A 463 WFAGVLEAENVPGLDVPGIDFRALAKGYGVQALKADNLEQLKGSLQEALSAKGPVLIEVSTVS 525 (528)
T ss_dssp HHHHHHTCCSCCSCBCCCCCHHHHHHHHTCEEEEESSHHHHHHHHHHHHTCSSCEEEEEEBCC
T ss_pred HHHHHhcCCCcccCCCCCCCHHHHHHHcCCeEEEeCCHHHHHHHHHHHHHCCCcEEEEEEecC
Confidence 310 00 0011110 0 1123445666666678999999999976
No 36
>2uz1_A Benzaldehyde lyase; thiamine diphosphate, thiamine pyrophosphate, benzoin, flavoprotein; HET: TPP; 1.65A {Pseudomonas fluorescens} PDB: 2ag1_A* 2ag0_A* 2uz1_B* 3iae_A* 3iaf_A* 3d7k_A*
Probab=97.57 E-value=1.5e-05 Score=93.38 Aligned_cols=101 Identities=17% Similarity=0.175 Sum_probs=65.9
Q ss_pred CCCccccceeechhHHHHHhcCCCCCCceEEEEEecCcccCCCchHHHhhhcc---CCCCCccccEEEEEEeC-Cccccc
Q 002323 364 SHLEAVDPVVVGKTRAKQYYSHDVDRTKNMGVLIHGDGSFAGQGVVYETLHLS---ALPNYTTGGTIHIVVNN-QVAFTT 439 (936)
Q Consensus 364 SHLeav~PVa~G~ArA~q~~~~d~~~~~~v~v~~hGDgA~sGQGvv~EtLNlA---~LP~Y~~GGtIhIV~NN-QigfTT 439 (936)
+++|...|.|+|++.|.+ +.+ ..+|++.|||+|. .+ + +.|+.+ +|| +++||.|| +||++.
T Consensus 419 g~~G~~l~~AiGaa~a~~--~~~-----~~vv~i~GDG~~~-~~-~-~~L~ta~~~~l~------~~ivv~nN~~~~~~~ 482 (563)
T 2uz1_A 419 GSMGVGFGTALGAQVADL--EAG-----RRTILVTGDGSVG-YS-I-GEFDTLVRKQLP------LIVIIMNNQSWGATL 482 (563)
T ss_dssp CCTTTHHHHHHHHHHHHH--HHT-----CEEEEEEEHHHHG-GG-T-THHHHHHHHTCC------CEEEEEECSBCHHHH
T ss_pred ccccChHHHHHHHHHHhh--CCC-----CeEEEEEccHHHh-CC-H-HHHHHHHHhCCC------eEEEEEeCCcchHHH
Confidence 348889999999999986 222 5789999999997 76 3 456665 999 99999888 588765
Q ss_pred CCC-------CCC-----Ccchhh--H---------HHHHHHHHHHHHHHccCCCEEEEEEeee
Q 002323 440 DPR-------AGR-----SSQYCT--D---------AVVHVCELAAEWRQKFHSDVVVDLVCYR 480 (936)
Q Consensus 440 ~~~-------~~r-----ss~y~t--D---------AV~~a~~~A~e~rr~f~~pvlIdlv~YR 480 (936)
... ... ...|.. . .-....+.|++.+.+.++|+|||+.|++
T Consensus 483 ~~~~~~~~~~~~~~~~~~~~d~~~~a~a~G~~~~~v~~~~~l~~al~~a~~~~gp~liev~~~~ 546 (563)
T 2uz1_A 483 HFQQLAVGPNRVTGTRLENGSYHGVAAAFGADGYHVDSVESFSAALAQALAHNRPACINVAVAL 546 (563)
T ss_dssp HHHHHHTCTTCCCSCBCCCCCHHHHHHHTTCEEEEECSHHHHHHHHHHHHHSSSCEEEEEECCS
T ss_pred HHHHHhcCCCcccCCcCCCCCHHHHHHHcCCeEEEeCCHHHHHHHHHHHHHCCCCEEEEEEecc
Confidence 310 100 011110 0 0112333444444457899999999973
No 37
>2iht_A Carboxyethylarginine synthase; thiamin diphosphate complex, transferase; HET: MSE TPP; 2.00A {Streptomyces clavuligerus} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1upb_A* 1upc_A* 1upa_A* 2ihu_A* 2ihv_A*
Probab=97.48 E-value=2.7e-05 Score=91.44 Aligned_cols=99 Identities=20% Similarity=0.241 Sum_probs=67.2
Q ss_pred CCCccccceeechhHHHHHhcCCCCCCceEEEEEecCcccCCCchHHHhhhcc---CCCCCccccEEEEEEeCC-ccccc
Q 002323 364 SHLEAVDPVVVGKTRAKQYYSHDVDRTKNMGVLIHGDGSFAGQGVVYETLHLS---ALPNYTTGGTIHIVVNNQ-VAFTT 439 (936)
Q Consensus 364 SHLeav~PVa~G~ArA~q~~~~d~~~~~~v~v~~hGDgA~sGQGvv~EtLNlA---~LP~Y~~GGtIhIV~NNQ-igfTT 439 (936)
+++|...|.|+|++.|.+ + ..+|++.|||+|. .+ .+.|+.+ +|| +++||.||+ ||++.
T Consensus 436 g~mG~~l~~AiGaa~a~~----~-----~~vv~i~GDG~~~-~~--~~~L~~a~~~~l~------~~ivv~NN~~~~~~~ 497 (573)
T 2iht_A 436 SSFGYGIPAAIGAQMARP----D-----QPTFLIAGDGGFH-SN--SSDLETIARLNLP------IVTVVVNNDTNGLIE 497 (573)
T ss_dssp CCTTCHHHHHHHHHHHST----T-----SCEEEEEEHHHHH-HT--GGGHHHHHHHTCC------CEEEEEECSBCHHHH
T ss_pred cccccHHHHHHHHHHhCC----C-----CcEEEEEccHHHH-hH--HHHHHHHHHhCCC------eEEEEEECCcchhhH
Confidence 458899999999999863 2 4589999999996 65 4567666 999 999998886 88766
Q ss_pred CC------C------CCCCcchhh--H---------HHHHHHHHHHHHHHccCCCEEEEEEeee
Q 002323 440 DP------R------AGRSSQYCT--D---------AVVHVCELAAEWRQKFHSDVVVDLVCYR 480 (936)
Q Consensus 440 ~~------~------~~rss~y~t--D---------AV~~a~~~A~e~rr~f~~pvlIdlv~YR 480 (936)
.. . +.....|.. . .-....+.|++.+.+.++|+|||+.|+|
T Consensus 498 ~~~~~~~~~~~~~~~~~~~~d~~~~a~a~G~~~~~v~~~~~l~~al~~a~~~~gp~liev~~~~ 561 (573)
T 2iht_A 498 LYQNIGHHRSHDPAVKFGGVDFVALAEANGVDATRATNREELLAALRKGAELGRPFLIEVPVNY 561 (573)
T ss_dssp HHHHHHHSSCCGGGTBCCCCCHHHHHHHTTCEEEECCSHHHHHHHHHHHHTSSSCEEEEEEBCC
T ss_pred HHHHHhcCCCcCccccCCCCCHHHHHHHcCCeEEEeCCHHHHHHHHHHHHhCCCCEEEEEECCC
Confidence 31 0 000011110 0 1123344555555567899999999998
No 38
>1t9b_A Acetolactate synthase, mitochondrial; acetohydroxyacid synthase, herbicide, sulfonylurea, thiamin diphosphate, FAD, inhibitor; HET: 1CS P25 FAD NSP P22 YF3; 2.20A {Saccharomyces cerevisiae} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1n0h_A* 1t9a_A* 1t9c_A* 1t9d_A* 1jsc_A*
Probab=97.40 E-value=4.7e-05 Score=91.59 Aligned_cols=98 Identities=16% Similarity=0.219 Sum_probs=64.0
Q ss_pred CccccceeechhHHHHHhcCCCCCCceEEEEEecCcccCCCchHHHhhhcc---CCCCCccccEEEEEEeCC-cccccCC
Q 002323 366 LEAVDPVVVGKTRAKQYYSHDVDRTKNMGVLIHGDGSFAGQGVVYETLHLS---ALPNYTTGGTIHIVVNNQ-VAFTTDP 441 (936)
Q Consensus 366 Leav~PVa~G~ArA~q~~~~d~~~~~~v~v~~hGDgA~sGQGvv~EtLNlA---~LP~Y~~GGtIhIV~NNQ-igfTT~~ 441 (936)
+|...|.|+|+++|. .+ ..+|++.|||+|. .+ +.| |+.+ +|| +++||.||+ ||+++..
T Consensus 515 mG~~lpaAiGaalA~----p~-----~~Vv~i~GDGsf~-~~-~~e-L~ta~~~~l~------v~ivV~NN~~~g~~~~~ 576 (677)
T 1t9b_A 515 MGYGLPAAIGAQVAK----PE-----SLVIDIDGDASFN-MT-LTE-LSSAVQAGTP------VKILILNNEEQGMVTQW 576 (677)
T ss_dssp TTCHHHHHHHHHHHC----TT-----SEEEEEEEHHHHH-HH-GGG-HHHHHHHTCC------CEEEEEECSSCHHHHHH
T ss_pred hhchHHHHHHHHHhC----CC-----CeEEEEEeehHHh-cc-HHH-HHHHHHhCCC------eEEEEEeCCCchhhhhh
Confidence 788899999999985 22 5789999999996 64 455 6665 999 999998886 8875421
Q ss_pred ------CC-----CCCcchhh--H---------HHHHHHHHHHHHHHccCCCEEEEEEeeec
Q 002323 442 ------RA-----GRSSQYCT--D---------AVVHVCELAAEWRQKFHSDVVVDLVCYRR 481 (936)
Q Consensus 442 ------~~-----~rss~y~t--D---------AV~~a~~~A~e~rr~f~~pvlIdlv~YRr 481 (936)
.. .....|.. . .-....+.|++.+.+.++|+|||++++|-
T Consensus 577 ~~~~~~~~~~~~~~~~~d~~~la~a~G~~~~~v~~~~el~~al~~a~~~~gp~lIev~~~~~ 638 (677)
T 1t9b_A 577 QSLFYEHRYSHTHQLNPDFIKLAEAMGLKGLRVKKQEELDAKLKEFVSTKGPVLLEVEVDKK 638 (677)
T ss_dssp HHHHSTTCCCSCCCCCCCHHHHHHHTTCEEEEECSHHHHHHHHHHHHHCSSCEEEEEEBCSS
T ss_pred hhhhcCCCcccCcCCCCCHHHHHHHcCCeEEEECCHHHHHHHHHHHHHCCCcEEEEEEecCC
Confidence 00 00111210 0 11222334444444568999999999984
No 39
>2vk8_A Pyruvate decarboxylase isozyme 1; asymmetric active sites, phenylalanine catabolism, tryptophan catabolism, thiamine pyrophosphate; HET: TPP; 1.42A {Saccharomyces cerevisiae} PDB: 1qpb_A* 2vk1_A* 2w93_A* 1pyd_A* 1pvd_A* 2vk4_A* 2vjy_A* 2g1i_A*
Probab=97.37 E-value=2.7e-05 Score=91.14 Aligned_cols=62 Identities=19% Similarity=0.252 Sum_probs=49.9
Q ss_pred CCCccccceeechhHHHHHhcCCCCCCceEEEEEecCcccCCCchHHHhhhcc---CCCCCccccEEEEEEeCC-ccccc
Q 002323 364 SHLEAVDPVVVGKTRAKQYYSHDVDRTKNMGVLIHGDGSFAGQGVVYETLHLS---ALPNYTTGGTIHIVVNNQ-VAFTT 439 (936)
Q Consensus 364 SHLeav~PVa~G~ArA~q~~~~d~~~~~~v~v~~hGDgA~sGQGvv~EtLNlA---~LP~Y~~GGtIhIV~NNQ-igfTT 439 (936)
+.+|...|.|+|++.|.++++.+ ..+|++.|||+|. .+ + +.|+.+ +|| +++||.||+ ||++.
T Consensus 413 g~mG~~l~~A~Gaala~~~~~~~-----~~vv~~~GDG~~~-~~-~-~el~ta~~~~l~------~~ivv~nN~~~~~~~ 478 (563)
T 2vk8_A 413 GSIGFTTGATLGAAFAAEEIDPK-----KRVILFIGDGSLQ-LT-V-QEISTMIRWGLK------PYLFVLNNDGYTIQK 478 (563)
T ss_dssp CCTTHHHHHHHHHHHHHHHHCTT-----CCEEEEEEHHHHH-HH-G-GGHHHHHHTTCC------CEEEEEESSSCHHHH
T ss_pred hhhhhHHHHHHHHHHhCcccCCC-----CCEEEEEcchHhh-cc-H-HHHHHHHHcCCC------cEEEEEECCcchhhh
Confidence 45899999999999999876654 5789999999996 64 4 445555 999 999999886 88754
No 40
>1ozh_A ALS, acetolactate synthase, catabolic; acetohydroxyacid synthase, thiamin diphosphate, lyase; HET: PGE HE3; 2.00A {Klebsiella pneumoniae} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1ozg_A* 1ozf_A*
Probab=97.31 E-value=4.3e-05 Score=89.75 Aligned_cols=95 Identities=16% Similarity=0.196 Sum_probs=64.7
Q ss_pred CCccccceeechhHHHHHhcCCCCCCceEEEEEecCcccCCCchHHHhhhcc---CCCCCccccEEEEEEeCC-cccccC
Q 002323 365 HLEAVDPVVVGKTRAKQYYSHDVDRTKNMGVLIHGDGSFAGQGVVYETLHLS---ALPNYTTGGTIHIVVNNQ-VAFTTD 440 (936)
Q Consensus 365 HLeav~PVa~G~ArA~q~~~~d~~~~~~v~v~~hGDgA~sGQGvv~EtLNlA---~LP~Y~~GGtIhIV~NNQ-igfTT~ 440 (936)
.+|...|.|+|++.|.+ + ..+|++.|||+|. .+ +. .|+.+ +|| +++||.||+ ||++..
T Consensus 421 ~mG~~l~~AiGaala~~----~-----~~vv~i~GDG~~~-~~-~~-~L~ta~~~~l~------~~ivv~nN~~~~~~~~ 482 (566)
T 1ozh_A 421 TMGVALPWAIGAWLVNP----E-----RKVVSVSGDGGFL-QS-SM-ELETAVRLKAN------VLHLIWVDNGYNMVAI 482 (566)
T ss_dssp CTTCHHHHHHHHHHHST----T-----SEEEEEEEHHHHH-HH-TT-HHHHHHHHTCC------EEEEEEECSBCHHHHH
T ss_pred cccchHHHHHHHHHhCC----C-----CCEEEEEcChHHh-cc-HH-HHHHHHHhCCC------cEEEEEECCchhHHHH
Confidence 38889999999999853 2 5689999999996 65 34 46665 999 999999995 887642
Q ss_pred CC----------CCCCcchhh---------------HHHHHHHHHHHHHHHccCCCEEEEEEeeec
Q 002323 441 PR----------AGRSSQYCT---------------DAVVHVCELAAEWRQKFHSDVVVDLVCYRR 481 (936)
Q Consensus 441 ~~----------~~rss~y~t---------------DAV~~a~~~A~e~rr~f~~pvlIdlv~YRr 481 (936)
.. +.....|.. +++..+.+.| .+.++|+|||+.|+|.
T Consensus 483 ~~~~~~~~~~~~~~~~~d~~~~a~a~G~~~~~v~~~~el~~al~~a----~~~~gp~liev~~~~~ 544 (566)
T 1ozh_A 483 QEEKKYQRLSGVEFGPMDFKAYAESFGAKGFAVESAEALEPTLRAA----MDVDGPAVVAIPVDYR 544 (566)
T ss_dssp HHHHHHSSCCSCBCCCCCHHHHHHTTTSEEEECCSGGGHHHHHHHH----HHSSSCEEEEEEBCCT
T ss_pred HHHHhcCCCccCcCCCCCHHHHHHHcCCeEEEeCCHHHHHHHHHHH----HhCCCCEEEEEEeCCC
Confidence 10 000011110 1554444444 4578999999999873
No 41
>1ybh_A Acetolactate synthase, chloroplast; acetohydroxyacid synthase, herbicide, sulfonylurea, thiamin diphosphate, FAD, inhibitor; HET: CIE NHE FAD P22; 2.50A {Arabidopsis thaliana} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1yhy_A* 1yhz_A* 1yi0_A* 1yi1_A* 1z8n_A* 3ea4_A* 3e9y_A*
Probab=97.28 E-value=4.9e-05 Score=89.59 Aligned_cols=100 Identities=19% Similarity=0.212 Sum_probs=64.9
Q ss_pred CCccccceeechhHHHHHhcCCCCCCceEEEEEecCcccCCCchHHHhhhcc---CCCCCccccEEEEEEeC-CcccccC
Q 002323 365 HLEAVDPVVVGKTRAKQYYSHDVDRTKNMGVLIHGDGSFAGQGVVYETLHLS---ALPNYTTGGTIHIVVNN-QVAFTTD 440 (936)
Q Consensus 365 HLeav~PVa~G~ArA~q~~~~d~~~~~~v~v~~hGDgA~sGQGvv~EtLNlA---~LP~Y~~GGtIhIV~NN-QigfTT~ 440 (936)
++|...|.|+|++.|.. + ..+|++.|||+|. .+ .+.|+.+ +|| +++||.|| +||++..
T Consensus 427 ~~G~~l~~AiGaala~~----~-----~~vv~i~GDGs~~-~~--~~~L~ta~~~~l~------~~ivv~NN~~~~~~~~ 488 (590)
T 1ybh_A 427 AMGFGLPAAIGASVANP----D-----AIVVDIDGDGSFI-MN--VQELATIRVENLP------VKVLLLNNQHLGMVMQ 488 (590)
T ss_dssp CTTCHHHHHHHHHHHCT----T-----SCEEEEEEHHHHH-HT--TTHHHHHHHTTCC------EEEEEEECSBCHHHHH
T ss_pred cccchHHHHHHHHHhCC----C-----CcEEEEEccchhh-cc--HHHHHHHHHhCCC------cEEEEEECCcchHHHH
Confidence 48888999999999863 2 4689999999996 65 3456555 999 99999888 5777531
Q ss_pred C-------CCC-----C-------Ccchhh--H---------HHHHHHHHHHHHHHccCCCEEEEEEeeecC
Q 002323 441 P-------RAG-----R-------SSQYCT--D---------AVVHVCELAAEWRQKFHSDVVVDLVCYRRF 482 (936)
Q Consensus 441 ~-------~~~-----r-------ss~y~t--D---------AV~~a~~~A~e~rr~f~~pvlIdlv~YRr~ 482 (936)
. ... . ...|.. . .-....+.|++.+.+.++|+|||+.++|..
T Consensus 489 ~~~~~~~~~~~~~~~~~p~~~~~~~~d~~~~a~a~G~~~~~v~~~~el~~al~~a~~~~gp~liev~~~~~~ 560 (590)
T 1ybh_A 489 WEDRFYKANRAHTFLGDPAQEDEIFPNMLLFAAACGIPAARVTKKADLREAIQTMLDTPGPYLLDVICPHQE 560 (590)
T ss_dssp HHHHHSTTCCCSCBCSCGGGTTSCSSCHHHHHHHTTCCEEEECBHHHHHHHHHHHHHSSSCEEEEEECCTTC
T ss_pred HHHHhcCCccccccccccccccCCCCCHHHHHHHcCCeEEEeCCHHHHHHHHHHHHhCCCCEEEEEEecCCc
Confidence 0 000 0 011210 0 112233444555555689999999999844
No 42
>2pgn_A Cyclohexane-1,2-dione hydrolase (CDH); three alpha/beta domains; HET: P6G FAD TPP; 1.20A {Azoarcus SP} PDB: 2pgo_A*
Probab=97.27 E-value=3.7e-05 Score=90.70 Aligned_cols=97 Identities=14% Similarity=0.204 Sum_probs=67.0
Q ss_pred CCCccccceeechhHHHHHhcCCCCCCceEEEEEecCcccCCCchHHHhhhcc---CCCCCccccEEEEEEeCC-ccccc
Q 002323 364 SHLEAVDPVVVGKTRAKQYYSHDVDRTKNMGVLIHGDGSFAGQGVVYETLHLS---ALPNYTTGGTIHIVVNNQ-VAFTT 439 (936)
Q Consensus 364 SHLeav~PVa~G~ArA~q~~~~d~~~~~~v~v~~hGDgA~sGQGvv~EtLNlA---~LP~Y~~GGtIhIV~NNQ-igfTT 439 (936)
+.+|...|.|+|++.|.. + ..+|++.|||+|. .+ .+.|+.+ +|| +++||.||+ ||++.
T Consensus 424 g~mG~~l~~AiGaala~~----~-----~~vv~i~GDG~~~-~~--~~~L~ta~~~~l~------~~ivv~nN~~~~~~~ 485 (589)
T 2pgn_A 424 GILGCGFPMALGAQLAEP----N-----SRVFLGTGDGALY-YH--FNEFRVAVEHKLP------VITMVFTNESYGANW 485 (589)
T ss_dssp CCTTCHHHHHHHHHHHCT----T-----SCEEEEEEHHHHH-HH--GGGHHHHHHTTCC------CEEEEEECSBCHHHH
T ss_pred chhhhHHHHHHHHHHhCC----C-----CcEEEEEeeHHHH-hh--HHHHHHHHHhCCC------eEEEEEECCCcccch
Confidence 348889999999999853 2 4589999999996 76 3777776 999 999999997 77765
Q ss_pred CCC----------CCCCcchhh-------------H--HHHHHHHHHHHHHHccCCCEEEEEEeeecC
Q 002323 440 DPR----------AGRSSQYCT-------------D--AVVHVCELAAEWRQKFHSDVVVDLVCYRRF 482 (936)
Q Consensus 440 ~~~----------~~rss~y~t-------------D--AV~~a~~~A~e~rr~f~~pvlIdlv~YRr~ 482 (936)
... +.....|.. + ++..+.+.|+ +.++|+|||+.++|-.
T Consensus 486 ~~~~~~~~~~~~~~~~~~d~~~~a~a~G~~~~~v~~~~el~~al~~a~----~~~gp~liev~~~~~~ 549 (589)
T 2pgn_A 486 TLMNHQFGQNNWTEFMNPDWVGIAKAFGAYGESVRETGDIAGALQRAI----DSGKPALIEIPVSKTQ 549 (589)
T ss_dssp HHHHHHHSSCCSCBCCCCCHHHHHHHHTCEEEECTTTCCHHHHHHHHH----HHCSCEEEEEECCSSS
T ss_pred HHHHhhcCCCccccCCCCCHHHHHHHCCCeEEEECCHHHHHHHHHHHH----hCCCCEEEEEEecCCC
Confidence 311 000111110 1 5555555554 4689999999999743
No 43
>3eya_A Pyruvate dehydrogenase [cytochrome]; pyruvate oxidase, membrane-associated flavoprotein dehydrogenase, interactions with lipids cell membrane; HET: TDP FAD; 2.50A {Escherichia coli} PDB: 3ey9_A*
Probab=97.23 E-value=6.2e-05 Score=88.01 Aligned_cols=99 Identities=18% Similarity=0.286 Sum_probs=60.9
Q ss_pred CCccccceeechhHHHHHhcCCCCCCceEEEEEecCcccCCCchHHHhhhcc---CCCCCccccEEEEEEeCC-cccccC
Q 002323 365 HLEAVDPVVVGKTRAKQYYSHDVDRTKNMGVLIHGDGSFAGQGVVYETLHLS---ALPNYTTGGTIHIVVNNQ-VAFTTD 440 (936)
Q Consensus 365 HLeav~PVa~G~ArA~q~~~~d~~~~~~v~v~~hGDgA~sGQGvv~EtLNlA---~LP~Y~~GGtIhIV~NNQ-igfTT~ 440 (936)
.+|...|.|+|++.|.. + .-+|++.|||+|. .+ .+.|+.+ +|| +++||.||+ ||+++.
T Consensus 407 ~mG~~l~~AiGaala~~----~-----~~vv~i~GDGs~~-~~--~~~L~ta~~~~l~------~~ivv~nN~~~g~~~~ 468 (549)
T 3eya_A 407 SMANAMPQALGAQATEP----E-----RQVVAMCGDGGFS-ML--MGDFLSVVQMKLP------VKIVVFNNSVLGFVAM 468 (549)
T ss_dssp CTTCHHHHHHHHHHHST----T-----SCEEEEEEHHHHH-HT--GGGHHHHHHTTCC------CEEEEEECSBCCCC--
T ss_pred hhhhHHHHHHHHHHhCC----C-----CcEEEEEccchhh-cc--HHHHHHHHHhCCC------eEEEEEeCCccHHHHH
Confidence 37788899999998853 2 3589999999995 54 3445555 999 999988885 777542
Q ss_pred CCCCC----------Ccchhh--H---------HHHHHHHHHHHHHHccCCCEEEEEEeeec
Q 002323 441 PRAGR----------SSQYCT--D---------AVVHVCELAAEWRQKFHSDVVVDLVCYRR 481 (936)
Q Consensus 441 ~~~~r----------ss~y~t--D---------AV~~a~~~A~e~rr~f~~pvlIdlv~YRr 481 (936)
..... ...|.. . .-.+..+.|++.+.+.++|+|||+.+.|.
T Consensus 469 ~~~~~~~~~~~~~~~~~d~~~~a~a~G~~~~~v~~~~~l~~al~~a~~~~gp~liev~~~~~ 530 (549)
T 3eya_A 469 EMKAGGYLTDGTELHDTNFARIAEACGITGIRVEKASEVDEALQRAFSIDGPVLVDVVVAKE 530 (549)
T ss_dssp ----------CCBCCCCCHHHHHHHTTSEEEEECSGGGHHHHHHHHHHSSSCEEEEEEBCCC
T ss_pred HHHhcCCCCcCCcCCCCCHHHHHHHcCCcEEEeCCHHHHHHHHHHHHhCCCCEEEEEEeccc
Confidence 11100 001110 0 00112234444455578999999999874
No 44
>1ovm_A Indole-3-pyruvate decarboxylase; thiamine diphosphate, indole-3-acetic acid, TDP dependent enzyme, lyase; HET: TPP; 2.65A {Enterobacter cloacae} SCOP: c.31.1.3 c.36.1.5 c.36.1.9
Probab=97.20 E-value=5.3e-05 Score=88.39 Aligned_cols=101 Identities=11% Similarity=0.063 Sum_probs=65.3
Q ss_pred cCCCccccceeechhHHHHHhcCCCCCCceEEEEEecCcccCCCchHHHhhhcc--CCCCCccccEEEEEEeCC-ccccc
Q 002323 363 PSHLEAVDPVVVGKTRAKQYYSHDVDRTKNMGVLIHGDGSFAGQGVVYETLHLS--ALPNYTTGGTIHIVVNNQ-VAFTT 439 (936)
Q Consensus 363 PSHLeav~PVa~G~ArA~q~~~~d~~~~~~v~v~~hGDgA~sGQGvv~EtLNlA--~LP~Y~~GGtIhIV~NNQ-igfTT 439 (936)
-+++|...|.|+|++.|.+ + ..+|++.|||+|. .+ +.|-.+.+ +|| +++||.||+ ||++.
T Consensus 407 ~g~mG~~l~~A~G~a~a~~----~-----~~vv~~~GDG~~~-~~-~~el~ta~~~~l~------~~ivv~nN~~~~~~~ 469 (552)
T 1ovm_A 407 WGSIGYTLAAAFGAQTACP----N-----RRVIVLTGDGAAQ-LT-IQELGSMLRDKQH------PIILVLNNEGYTVER 469 (552)
T ss_dssp TCCTTHHHHHHHHHHHHCT----T-----SCEEEEEEHHHHH-HH-TTHHHHHHHTTCC------CEEEEEESSSCHHHH
T ss_pred hHhhhhHHHHHHHHHHhCC----C-----CcEEEEECchHHH-hH-HHHHHHHHHhCCC------CEEEEEECCCCeEEE
Confidence 3558999999999999853 2 4689999999995 54 44443434 999 999999986 88763
Q ss_pred CC----C---CC-------CCcchhh----H----HHHHHHHHHHHHHHccCCCEEEEEEeee
Q 002323 440 DP----R---AG-------RSSQYCT----D----AVVHVCELAAEWRQKFHSDVVVDLVCYR 480 (936)
Q Consensus 440 ~~----~---~~-------rss~y~t----D----AV~~a~~~A~e~rr~f~~pvlIdlv~YR 480 (936)
.. . +. ....|.- + .-....+.|++.+.+.++|+|||+.+++
T Consensus 470 ~~~~~~~~~~~~~~~d~~~~a~a~G~~~~~~~~~v~~~~~l~~al~~a~~~~gp~liev~~~~ 532 (552)
T 1ovm_A 470 AIHGAEQRYNDIALWNWTHIPQALSLDPQSECWRVSEAEQLADVLEKVAHHERLSLIEVMLPK 532 (552)
T ss_dssp HHSCTTCGGGCCCCCCGGGSTTTSCSSCCEEEEEECBHHHHHHHHHHHTTCSSEEEEEEECCT
T ss_pred eeccCCCCcccCCCCCHHHHHHHhCCCcCCCEEEeCCHHHHHHHHHHHHhCCCCEEEEEEcCc
Confidence 11 0 00 0001101 1 0022334455555567899999999986
No 45
>2x7j_A 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene -1-carboxylate synthase; transferase, metal-binding; HET: TPP; 2.35A {Bacillus subtilis}
Probab=97.16 E-value=5.6e-05 Score=89.46 Aligned_cols=96 Identities=18% Similarity=0.136 Sum_probs=62.0
Q ss_pred CccccceeechhHHHHHhcCCCCCCceEEEEEecCcccCCCchHHHhhhcc---CCCCCccccEEEEEEeC-CcccccCC
Q 002323 366 LEAVDPVVVGKTRAKQYYSHDVDRTKNMGVLIHGDGSFAGQGVVYETLHLS---ALPNYTTGGTIHIVVNN-QVAFTTDP 441 (936)
Q Consensus 366 Leav~PVa~G~ArA~q~~~~d~~~~~~v~v~~hGDgA~sGQGvv~EtLNlA---~LP~Y~~GGtIhIV~NN-QigfTT~~ 441 (936)
++...|.|+|++.|. + ..+|++.|||+|. .+ +.| |+.+ +|| +++||.|| +||+....
T Consensus 457 ig~~l~~AiGaala~-----~-----~~vv~i~GDGsf~-~~-~~e-L~ta~~~~lp------~~ivv~NN~~~~i~~~~ 517 (604)
T 2x7j_A 457 IDGVVSSAMGVCEGT-----K-----APVTLVIGDLSFY-HD-LNG-LLAAKKLGIP------LTVILVNNDGGGIFSFL 517 (604)
T ss_dssp SSSHHHHHHHHHHHH-----T-----SCEEEEEEHHHHH-HT-GGG-GHHHHHHCCC------EEEEEEECSSCGGGGGS
T ss_pred cCcHHHHHHHHHhcC-----C-----CcEEEEEccHHHH-hH-HHH-HHHhhhcCCC------eEEEEEeCCCCcccccC
Confidence 677889999999983 2 4589999999996 65 455 6666 999 99999887 67875422
Q ss_pred C-CC------C--C----cchhh--H---------HHHHHHHHHHHHHHccCCCEEEEEEeee
Q 002323 442 R-AG------R--S----SQYCT--D---------AVVHVCELAAEWRQKFHSDVVVDLVCYR 480 (936)
Q Consensus 442 ~-~~------r--s----s~y~t--D---------AV~~a~~~A~e~rr~f~~pvlIdlv~YR 480 (936)
. .+ + . ..|.. . .-....+.|++.+.+.++|+|||+.++|
T Consensus 518 ~~~q~~~~~~~~~~~~~~~d~~~~a~a~G~~~~~v~~~~el~~al~~a~~~~gp~liev~~~~ 580 (604)
T 2x7j_A 518 PQASEKTHFEDLFGTPTGLDFKHAAALYGGTYSCPASWDEFKTAYAPQADKPGLHLIEIKTDR 580 (604)
T ss_dssp GGGSCHHHHHHHTTCCCCCCTHHHHHHTTCEEECCSSHHHHHHHCCCCCSSCCEEEEEEECCH
T ss_pred CCCccchhhHhhccCCCCCCHHHHHHHcCCeEEecCCHHHHHHHHHHHHhCCCCEEEEEECCc
Confidence 1 00 0 0 01110 0 1122234444444456899999999875
No 46
>2vbi_A Pyruvate decarboxylase; thiamine pyrophosphate, lyase, pyruv flavoprotein, THDP-dependent enzyme; HET: TPP; 2.75A {Acetobacter pasteurianus}
Probab=97.12 E-value=0.00014 Score=85.24 Aligned_cols=98 Identities=20% Similarity=0.260 Sum_probs=64.6
Q ss_pred CCccccceeechhHHHHHhcCCCCCCceEEEEEecCcccCCCchHHHhhhcc---CCCCCccccEEEEEEeC-CcccccC
Q 002323 365 HLEAVDPVVVGKTRAKQYYSHDVDRTKNMGVLIHGDGSFAGQGVVYETLHLS---ALPNYTTGGTIHIVVNN-QVAFTTD 440 (936)
Q Consensus 365 HLeav~PVa~G~ArA~q~~~~d~~~~~~v~v~~hGDgA~sGQGvv~EtLNlA---~LP~Y~~GGtIhIV~NN-QigfTT~ 440 (936)
.+|...|.|+|++.|.. + ..+|++.|||+|. .+ +.| |+.+ ++| +++||.|| +||++..
T Consensus 410 ~mG~~l~~A~G~ala~~----~-----~~vv~~~GDG~~~-~~-~~e-L~ta~~~~l~------~~ivv~nN~~~~~~~~ 471 (566)
T 2vbi_A 410 HIGWSVPSAFGNAMGSQ----D-----RQHVVMVGDGSFQ-LT-AQE-VAQMVRYELP------VIIFLINNRGYVIEIA 471 (566)
T ss_dssp CTTTHHHHHHHHHHTCT----T-----SEEEEEEEHHHHH-HH-GGG-HHHHHHTTCC------CEEEEEECSSCHHHHT
T ss_pred chhhHHHHHHHHHHhCC----C-----CcEEEEEcchHHH-hh-HHH-HHHHHHhCCC------cEEEEEECCcceEEEe
Confidence 48899999999999852 2 4689999999996 64 444 6665 899 99999888 6888754
Q ss_pred CCCC-----CCcc-------hhh-----H----HHHHHHHHHHHHHHcc-CCCEEEEEEeee
Q 002323 441 PRAG-----RSSQ-------YCT-----D----AVVHVCELAAEWRQKF-HSDVVVDLVCYR 480 (936)
Q Consensus 441 ~~~~-----rss~-------y~t-----D----AV~~a~~~A~e~rr~f-~~pvlIdlv~YR 480 (936)
..+. .... |.- . .-....+.|++.+.+. ++|+|||+.|+|
T Consensus 472 ~~~~~~~~~~~~d~~~~a~a~G~~~~~~~~~~v~~~~el~~al~~a~~~~~gp~liev~~~~ 533 (566)
T 2vbi_A 472 IHDGPYNYIKNWDYAGLMEVFNAGEGHGLGLKATTPKELTEAIARAKANTRGPTLIECQIDR 533 (566)
T ss_dssp TSCCGGGCCCCCCTTTHHHHHHTTTCCCEEEEECSHHHHHHHHHHHHHCCSSCEEEEEECCT
T ss_pred eccCCccCCCCCCHHHHHHHcCCCCCCccEEEeCCHHHHHHHHHHHHhcCCCcEEEEEEeCc
Confidence 3210 0000 101 0 0012334445555555 899999999986
No 47
>3hww_A 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene- carboxylate synthase; menaquinone, THDP, Mg, vitamin K2, carboxylase, magnesium; HET: AKG; 1.95A {Escherichia coli k-12} PDB: 3flm_A* 3hwx_A* 2jlc_A* 2jla_A*
Probab=97.02 E-value=0.0002 Score=83.88 Aligned_cols=95 Identities=21% Similarity=0.118 Sum_probs=57.1
Q ss_pred CccccceeechhHHHHHhcCCCCCCceEEEEEecCcccCCCchHHHhhhcc---CCCCCccccEEEEEEeCCc-ccccCC
Q 002323 366 LEAVDPVVVGKTRAKQYYSHDVDRTKNMGVLIHGDGSFAGQGVVYETLHLS---ALPNYTTGGTIHIVVNNQV-AFTTDP 441 (936)
Q Consensus 366 Leav~PVa~G~ArA~q~~~~d~~~~~~v~v~~hGDgA~sGQGvv~EtLNlA---~LP~Y~~GGtIhIV~NNQi-gfTT~~ 441 (936)
.|. .|.|+|++.|. + ..+|++.|||||. . .+.| |+.+ +|| +++||.||+. |+....
T Consensus 419 ~G~-l~~A~Gaa~a~-----~-----~~vv~i~GDGsf~-~-~~~e-L~ta~~~~lp------v~ivv~NN~~~~~~~~~ 478 (556)
T 3hww_A 419 DGL-LSTAAGVQRAS-----G-----KPTLAIVGDLSAL-Y-DLNA-LALLRQVSAP------LVLIVVNNNGGQIFSLL 478 (556)
T ss_dssp SSH-HHHHHHHHHHH-----C-----CCEEEEEEHHHHH-H-TGGG-HHHHTTCSSC------EEEEEEESCC-------
T ss_pred ccH-HHHHHHHHhcC-----C-----CcEEEEEccHHhh-h-cchh-hHhhcccCCC------cEEEEEECCCCCcccCC
Confidence 445 89999999982 2 4588999999994 2 2444 4433 999 9999999985 443211
Q ss_pred C----CC-C------Ccchhh--H---------HHHHHHHHHHHHHHccCCCEEEEEEeee
Q 002323 442 R----AG-R------SSQYCT--D---------AVVHVCELAAEWRQKFHSDVVVDLVCYR 480 (936)
Q Consensus 442 ~----~~-r------ss~y~t--D---------AV~~a~~~A~e~rr~f~~pvlIdlv~YR 480 (936)
. .+ + ...|.. . .-....+.|++.+.+.++|+|||+++.|
T Consensus 479 ~~~~~~~~~~~~~~~~~d~~~~a~a~G~~~~~v~~~~~l~~al~~a~~~~gp~liev~~~~ 539 (556)
T 3hww_A 479 PTPQSERERFYLMPQNVHFEHAAAMFELKYHRPQNWQELETAFADAWRTPTTTVIEMVVND 539 (556)
T ss_dssp ----------CCCCCCCCSHHHHHHTTCEEECCSSHHHHHHHHHHHTTSSSEEEEEEECCS
T ss_pred CCcchhHHHhccCCCCCCHHHHHHHcCCcEEecCCHHHHHHHHHHHHhCCCCEEEEEECCc
Confidence 0 00 0 001110 0 1123345566666678899999999865
No 48
>2nxw_A Phenyl-3-pyruvate decarboxylase; thiamine pyrophosphate, asymmetric dimer of dimers, open ACT loops, lyase; HET: TPP; 1.50A {Azospirillum brasilense} PDB: 2q5j_A* 2q5l_A* 2q5o_A* 2q5q_A*
Probab=96.99 E-value=0.00015 Score=85.11 Aligned_cols=98 Identities=14% Similarity=0.130 Sum_probs=62.3
Q ss_pred CCccccceeechhHHHHHhcCCCCCCceEEEEEecCcccCCCchHHHhhhcc---CCCCCccccEEEEEEeCC-cccccC
Q 002323 365 HLEAVDPVVVGKTRAKQYYSHDVDRTKNMGVLIHGDGSFAGQGVVYETLHLS---ALPNYTTGGTIHIVVNNQ-VAFTTD 440 (936)
Q Consensus 365 HLeav~PVa~G~ArA~q~~~~d~~~~~~v~v~~hGDgA~sGQGvv~EtLNlA---~LP~Y~~GGtIhIV~NNQ-igfTT~ 440 (936)
.+|...|.|+|++.|.. + ..+|++.|||+|. ...+.|+.+ +|| +++||.||+ ||++..
T Consensus 423 ~mG~~l~~A~G~ala~~----~-----~~vv~i~GDG~~~---~~~~~l~ta~~~~l~------~~ivv~nN~~~~~~~~ 484 (565)
T 2nxw_A 423 GMGFGVPAGIGAQCVSG----G-----KRILTVVGDGAFQ---MTGWELGNCRRLGID------PIVILFNNASWEMLRT 484 (565)
T ss_dssp CTTCHHHHHHHHHHHTT----T-----CCEEEEEEHHHHH---HHGGGGGGHHHHTCC------CEEEEEECSBCHHHHH
T ss_pred cccccchHHHHHHHhCC----C-----CcEEEEEechHHH---hhHHHHHHHHHhCCC------CEEEEEECCCCcEEee
Confidence 37888999999999853 2 4578999999995 445556654 999 999998885 887642
Q ss_pred CCC-C-----CCcchhh-------H----HHHHHHHHHHHHHHccCCCE-EEEEEeee
Q 002323 441 PRA-G-----RSSQYCT-------D----AVVHVCELAAEWRQKFHSDV-VVDLVCYR 480 (936)
Q Consensus 441 ~~~-~-----rss~y~t-------D----AV~~a~~~A~e~rr~f~~pv-lIdlv~YR 480 (936)
... . ....|.. + .-....+.|++.+.+.++|+ |||+.|+|
T Consensus 485 ~~~~~~~~~~~~~d~~~~a~a~G~~~~~v~~~~el~~al~~a~~~~gp~~liev~~~~ 542 (565)
T 2nxw_A 485 FQPESAFNDLDDWRFADMAAGMGGDGVRVRTRAELKAALDKAFATRGRFQLIEAMIPR 542 (565)
T ss_dssp HCTTCGGGBCCCCCHHHHTGGGTSEEEEECBHHHHHHHHHHHHHCCSSCEEEEEECCT
T ss_pred ecccCCCCcCCCCCHHHHHHHcCCCEEEeCCHHHHHHHHHHHHhcCCCeEEEEEEccc
Confidence 110 0 0011110 0 01123344444444457898 99999986
No 49
>2vbf_A Branched-chain alpha-ketoacid decarboxylase; KDCA, flavoprotein, THDP-dependent enzymes, thiamine pyrophosphate, lyase; HET: TPP; 1.60A {Lactococcus lactis} PDB: 2vbg_A*
Probab=96.95 E-value=0.00017 Score=84.66 Aligned_cols=98 Identities=19% Similarity=0.218 Sum_probs=64.8
Q ss_pred CCCccccceeechhHHHHHhcCCCCCCceEEEEEecCcccCCCchHHHhhhcc---CCCCCccccEEEEEEeC-Cccccc
Q 002323 364 SHLEAVDPVVVGKTRAKQYYSHDVDRTKNMGVLIHGDGSFAGQGVVYETLHLS---ALPNYTTGGTIHIVVNN-QVAFTT 439 (936)
Q Consensus 364 SHLeav~PVa~G~ArA~q~~~~d~~~~~~v~v~~hGDgA~sGQGvv~EtLNlA---~LP~Y~~GGtIhIV~NN-QigfTT 439 (936)
+.+|...|.|+|++.|.+ + ..+|++.|||+|. .+ +.| |+.+ +|| +++||.|| +||++.
T Consensus 425 g~mG~~l~~A~Gaala~~----~-----~~vv~~~GDG~~~-~~-~~e-L~ta~~~~l~------~~ivv~nN~~~~~~~ 486 (570)
T 2vbf_A 425 GSIGYTFPAALGSQIADK----E-----SRHLLFIGDGSLQ-LT-VQE-LGLSIREKLN------PICFIINNDGYTVER 486 (570)
T ss_dssp CCTTTHHHHHHHHHHHCT----T-----SEEEEEEEHHHHH-HH-GGG-HHHHHHTTCC------CEEEEEESSSCHHHH
T ss_pred hhhhhhHHHHHHHHHhCC----C-----CcEEEEEcchhhh-cC-HHH-HHHHHHcCCC------CEEEEEECCchHHHH
Confidence 448899999999999953 2 5689999999996 64 444 6655 999 99999877 688754
Q ss_pred CCC--CC-----C-----------Ccc-----hh-hHHHHHHHHHHHHH-HHccCCCEEEEEEeee
Q 002323 440 DPR--AG-----R-----------SSQ-----YC-TDAVVHVCELAAEW-RQKFHSDVVVDLVCYR 480 (936)
Q Consensus 440 ~~~--~~-----r-----------ss~-----y~-tDAV~~a~~~A~e~-rr~f~~pvlIdlv~YR 480 (936)
... .. . .-. +. .| -....+.|++. +.+.++|+|||+.++|
T Consensus 487 ~~~~~~~~~~~~~~~d~~~~a~a~G~~~~~~~~~~v~-~~~el~~al~~a~~~~~~p~liev~~~~ 551 (570)
T 2vbf_A 487 EIHGPTQSYNDIPMWNYSKLPETFGATEDRVVSKIVR-TENEFVSVMKEAQADVNRMYWIELVLEK 551 (570)
T ss_dssp HHSCTTCGGGCCCCCCGGGHHHHTTCCTTTEEEEEEC-BHHHHHHHHHHHHHCTTSEEEEEEECCT
T ss_pred HHhccCCCccCCCCCCHHHHHHHcCCCcCCcceEEec-CHHHHHHHHHHHHhcCCCcEEEEEEcCc
Confidence 211 00 0 001 00 01 02233445554 4567899999999986
No 50
>2c31_A Oxalyl-COA decarboxylase; oxalate, thiamin diphosphate, flavoprotein, lyase, thiamine pyrophosphate; HET: TZD ADP; 1.73A {Oxalobacter formigenes} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 2ji6_A* 2ji7_A* 2ji8_A* 2ji9_A* 2jib_A*
Probab=96.92 E-value=0.00034 Score=81.98 Aligned_cols=93 Identities=15% Similarity=0.114 Sum_probs=59.8
Q ss_pred CccccceeechhHHHHHhcCCCCCCceEEEEEecCcccCCCchHHHhhhcc---CCCCCccccEEEEEEeCCc--ccccC
Q 002323 366 LEAVDPVVVGKTRAKQYYSHDVDRTKNMGVLIHGDGSFAGQGVVYETLHLS---ALPNYTTGGTIHIVVNNQV--AFTTD 440 (936)
Q Consensus 366 Leav~PVa~G~ArA~q~~~~d~~~~~~v~v~~hGDgA~sGQGvv~EtLNlA---~LP~Y~~GGtIhIV~NNQi--gfTT~ 440 (936)
+|...|.|+|++.| . + ..+|++.|||+|. .. + +.|+.+ +|| +++||.||+. ++...
T Consensus 428 ~G~~l~~AiGaala-~----~-----~~vv~i~GDGsf~-~~-~-~el~ta~~~~l~------~~ivv~NN~~~~~~~~~ 488 (568)
T 2c31_A 428 MGIGMGYCVAAAAV-T----G-----KPVIAVEGDSAFG-FS-G-MELETICRYNLP------VTVIIMNNGGIYKGNEA 488 (568)
T ss_dssp SSCHHHHHHHHHHH-H----C-----SCEEEEEEHHHHH-TT-G-GGHHHHHHTTCC------EEEEEEESSBSSCSCCC
T ss_pred ccccHHHHHHHHhC-C----C-----CcEEEEEcchHhh-cc-H-HHHHHHHHhCCC------eEEEEEeCchhHHHHHH
Confidence 77788999999998 1 2 4578999999995 43 3 345544 999 9999999983 33211
Q ss_pred CC-CCCC-------cchhh---------------HHHHHHHHHHHHHHHccCCCEEEEEEeeec
Q 002323 441 PR-AGRS-------SQYCT---------------DAVVHVCELAAEWRQKFHSDVVVDLVCYRR 481 (936)
Q Consensus 441 ~~-~~rs-------s~y~t---------------DAV~~a~~~A~e~rr~f~~pvlIdlv~YRr 481 (936)
.. ..+. ..|.. +++..+.+.|+ +.++|+|||+.++|.
T Consensus 489 ~~~~~~~~~~~~~~~d~~~~a~a~G~~~~~v~~~~el~~al~~a~----~~~~p~liev~~~~~ 548 (568)
T 2c31_A 489 DPQPGVISCTRLTRGRYDMMMEAFGGKGYVANTPAELKAALEEAV----ASGKPCLINAMIDPD 548 (568)
T ss_dssp CSBTTBCCTTBCCCCCHHHHHHTTTCEEEEESSHHHHHHHHHHHH----HHTSCEEEEEEBCTT
T ss_pred HhhcCCcccCcCCCCCHHHHHHHcCCeEEEeCCHHHHHHHHHHHH----hCCCCEEEEEEeccc
Confidence 10 0000 01110 14444444444 468999999999874
No 51
>2wvg_A PDC, pyruvate decarboxylase; thiamine diphosphate, lyase, flavoprotein, metal-binding, alcohol fermentation; HET: TPU; 1.75A {Zymomonas mobilis} PDB: 2wva_A* 2wvh_A 3oe1_A* 1zpd_A*
Probab=96.91 E-value=0.00038 Score=81.61 Aligned_cols=58 Identities=26% Similarity=0.391 Sum_probs=45.1
Q ss_pred CCccccceeechhHHHHHhcCCCCCCceEEEEEecCcccCCCchHHHhhhcc---CCCCCccccEEEEEEeC-CcccccC
Q 002323 365 HLEAVDPVVVGKTRAKQYYSHDVDRTKNMGVLIHGDGSFAGQGVVYETLHLS---ALPNYTTGGTIHIVVNN-QVAFTTD 440 (936)
Q Consensus 365 HLeav~PVa~G~ArA~q~~~~d~~~~~~v~v~~hGDgA~sGQGvv~EtLNlA---~LP~Y~~GGtIhIV~NN-QigfTT~ 440 (936)
.+|...|.|+|++.|.. + ..+|++.|||+|. .+ +.| |+.+ ++| +++||.|| +||++..
T Consensus 414 ~~G~~l~~A~G~ala~~----~-----~~vv~i~GDGs~~-~~-~~e-l~ta~~~~l~------~~ivv~NN~~~~~~~~ 475 (568)
T 2wvg_A 414 HIGWSVPAAFGYAVGAP----E-----RRNILMVGDGSFQ-LT-AQE-VAQMVRLKLP------VIIFLINNYGYTIEVM 475 (568)
T ss_dssp CTTTHHHHHHHHHHHCT----T-----SEEEEEEEHHHHH-HH-GGG-HHHHHHTTCC------CEEEEEECSSCHHHHT
T ss_pred hhhhHHHHHHHHHHhCC----C-----CcEEEEEcChhHh-cc-HHH-HHHHHHcCCC------cEEEEEECCcceEeee
Confidence 48899999999999953 2 5689999999996 63 555 5554 899 98888876 5888754
No 52
>2q28_A Oxalyl-COA decarboxylase; lyase, oxalate degradation, thiami diphosphate, lyase; HET: TPP ADP MES; 1.74A {Escherichia coli} PDB: 2q27_A* 2q29_A*
Probab=96.86 E-value=0.00041 Score=81.16 Aligned_cols=93 Identities=19% Similarity=0.239 Sum_probs=60.1
Q ss_pred CccccceeechhHHHHHhcCCCCCCceEEEEEecCcccCCCchHHHhhhcc---CCCCCccccEEEEEEeCC-c-ccccC
Q 002323 366 LEAVDPVVVGKTRAKQYYSHDVDRTKNMGVLIHGDGSFAGQGVVYETLHLS---ALPNYTTGGTIHIVVNNQ-V-AFTTD 440 (936)
Q Consensus 366 Leav~PVa~G~ArA~q~~~~d~~~~~~v~v~~hGDgA~sGQGvv~EtLNlA---~LP~Y~~GGtIhIV~NNQ-i-gfTT~ 440 (936)
+|...|.|+|++.| . + ..+|++.|||+|. .. +.| |+.+ +|| +++||.||+ | +++..
T Consensus 423 ~G~~l~~AiGaa~a-~----~-----~~vv~i~GDGsf~-~~-~~e-l~ta~~~~l~------~~ivv~NN~~~~~~~~~ 483 (564)
T 2q28_A 423 MGIGMGYAIGASVT-S----G-----SPVVAIEGDSAFG-FS-GME-IETICRYNLP------VTIVIFNNGGIYRGDGV 483 (564)
T ss_dssp TTCHHHHHHHHHHH-H----C-----SCEEEEEEHHHHH-TT-GGG-HHHHHHTTCC------EEEEEEECSBSSCSCCC
T ss_pred ccchHHHHHHHhhc-C----C-----CcEEEEEcchHhh-cc-HHH-HHHHHHhCCC------eEEEEEeCchhHHHHHH
Confidence 77888999999998 1 2 4589999999995 53 344 4444 999 999999998 3 44321
Q ss_pred CC--CCC-C-------cchhh---------------HHHHHHHHHHHHHHHccCCCEEEEEEeeec
Q 002323 441 PR--AGR-S-------SQYCT---------------DAVVHVCELAAEWRQKFHSDVVVDLVCYRR 481 (936)
Q Consensus 441 ~~--~~r-s-------s~y~t---------------DAV~~a~~~A~e~rr~f~~pvlIdlv~YRr 481 (936)
.. ..+ + ..|.. +++..+.+.|+ +.++|+|||+.+.|.
T Consensus 484 ~~~~~~~~~~~~~~~~~d~~~~a~a~G~~~~~v~~~~el~~al~~a~----~~~~p~liev~~~~~ 545 (564)
T 2q28_A 484 DLSGAGAPSPTDLLHHARYDKLMDAFRGVGYNVTTTDELRHALTTGI----QSRKPTIINVVIDPA 545 (564)
T ss_dssp CTTSSCCCCTTBCCTTCCGGGGGGGGTCEEEEECSHHHHHHHHHHHH----HHTSCEEEEEEBCTT
T ss_pred HHhccCCccccccCCCCCHHHHHHHcCCeEEEeCCHHHHHHHHHHHH----hCCCCEEEEEEeccc
Confidence 10 000 0 01110 14444444444 468899999999874
No 53
>3lq1_A 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene- 1-carboxylate synthase; menaquinone biosynthesis, sephchc synthase, structural genomics; 2.60A {Listeria monocytogenes}
Probab=96.34 E-value=0.0011 Score=77.89 Aligned_cols=93 Identities=19% Similarity=0.164 Sum_probs=50.9
Q ss_pred cccceeechhHHHHHhcCCCCCCceEEEEEecCcccCCCchHHHhhhcc---CCCCCccccEEEEEEeCC-cccccCC-C
Q 002323 368 AVDPVVVGKTRAKQYYSHDVDRTKNMGVLIHGDGSFAGQGVVYETLHLS---ALPNYTTGGTIHIVVNNQ-VAFTTDP-R 442 (936)
Q Consensus 368 av~PVa~G~ArA~q~~~~d~~~~~~v~v~~hGDgA~sGQGvv~EtLNlA---~LP~Y~~GGtIhIV~NNQ-igfTT~~-~ 442 (936)
...|.|+|++.+ + .-+|++.|||+|. - .+.| |+.+ +|| +++||.||+ ||+.... .
T Consensus 440 g~l~~AiGaa~~------~-----~~vv~i~GDGsf~-~-~~~e-L~ta~~~~l~------~~ivv~NN~~~g~~~~~~~ 499 (578)
T 3lq1_A 440 GVVSSALGASVV------F-----QPMFLLIGDLSFY-H-DMNG-LLMAKKYKMN------LTIVIVNNDGGGIFSFLPQ 499 (578)
T ss_dssp SHHHHHHHHTTT------S-----SSEEEEEEHHHHH-H-TGGG-GHHHHHTTCC------EEEEEECCC----------
T ss_pred cHHHHHHHHhcC------C-----CCEEEEEchHHHH-h-hHHH-HHhhccCCCC------eEEEEEECCcCcccccccc
Confidence 357888888643 2 4589999999994 2 2333 5444 999 999999994 6665421 1
Q ss_pred CC--C--Ccchh----hH---------------HHHHHHHHHHHHHHccCCCEEEEEEeee
Q 002323 443 AG--R--SSQYC----TD---------------AVVHVCELAAEWRQKFHSDVVVDLVCYR 480 (936)
Q Consensus 443 ~~--r--ss~y~----tD---------------AV~~a~~~A~e~rr~f~~pvlIdlv~YR 480 (936)
.+ + ...+. .| .-....+.|++.+.+.++|+|||+.+.|
T Consensus 500 ~~~~~~~~~~~~~~~~~d~~~~a~a~G~~~~~v~~~~el~~al~~a~~~~gp~liev~~~~ 560 (578)
T 3lq1_A 500 ANEPKYFESLFGTSTELDFRFAAAFYDADYHEAKSVDELEEAIDKASYHKGLDIIEVKTNR 560 (578)
T ss_dssp ---------------CCCTHHHHHHTTCEEEECCSHHHHHHHHHHHTTSSSEEEEEEC---
T ss_pred ccccchhhhhccCCCCCCHHHHHHHcCCceEecCCHHHHHHHHHHHHhCCCCEEEEEECCc
Confidence 01 0 00010 11 1123345566666667899999999876
No 54
>2c42_A Pyruvate-ferredoxin oxidoreductase; 4Fe-4S, iron, iron-sulfur, iron-sulfur cluster, pyruvate catabolism, TPP-dependent enzyme; HET: TPP; 1.78A {Desulfovibrio africanus} SCOP: c.36.1.8 c.36.1.12 c.48.1.3 c.64.1.1 d.58.1.5 PDB: 1b0p_A* 1kek_A* 2c3o_A* 2c3p_A* 2c3u_A* 2c3y_A* 2c3m_A* 2pda_A* 2uza_A*
Probab=78.87 E-value=1.8 Score=55.56 Aligned_cols=36 Identities=19% Similarity=0.232 Sum_probs=26.5
Q ss_pred eEEEEEecCc-ccCCCchHHHhhhcc--CCCCCccccEEEEEEeCCc
Q 002323 392 NMGVLIHGDG-SFAGQGVVYETLHLS--ALPNYTTGGTIHIVVNNQV 435 (936)
Q Consensus 392 ~v~v~~hGDg-A~sGQGvv~EtLNlA--~LP~Y~~GGtIhIV~NNQi 435 (936)
.-+|++.||| +|. -| +.|-.+.. ++| +++||.||+.
T Consensus 954 ~~Vv~i~GDG~~~~-mg-~~eL~ta~~~~~~------v~iiVlnN~~ 992 (1231)
T 2c42_A 954 KSVWIFGGDGWAYD-IG-YGGLDHVLASGED------VNVFVMDTEV 992 (1231)
T ss_dssp CEEEEEEEHHHHHT-TT-HHHHHHHHHTTCS------CEEEEEECSS
T ss_pred CcEEEEeCcHHHHH-cc-hHHHHHHHHhCCC------eEEEEEECHH
Confidence 5789999999 664 44 33444444 999 9999999974
No 55
>2zzd_B Thiocyanate hydrolase subunit beta; scnase, cobalt, metalloprotein, sulfenic acid, sulfinic acid, nitrIle hydratase, carbonyl sulfide; HET: FRU TLA BGC; 1.78A {Thiobacillus thioparus} PDB: 2dd4_B 2dxb_B 2dd5_B* 2dxc_B*
Probab=43.01 E-value=34 Score=33.97 Aligned_cols=37 Identities=11% Similarity=0.114 Sum_probs=30.9
Q ss_pred HHHHHcCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHH
Q 002323 498 YQVIRSHPSAFEIYQKKLLESAQVTQEDINRIQEKVNTILNEE 540 (936)
Q Consensus 498 y~~i~~~~dpl~~y~~~Li~eGilt~eei~~i~~~~~~~l~~a 540 (936)
|+.| +.-+++-|++.|++|++|+++..++++++.+..
T Consensus 109 Ye~W------L~ALe~lLvekGvit~~EL~ar~aEv~ar~~~~ 145 (157)
T 2zzd_B 109 YGRW------LLTAARILVDKQFVTLTELHNKIVEMRERVASG 145 (157)
T ss_dssp HHHH------HHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHT
T ss_pred HHHH------HHHHHHHHHHcCCCCHHHHHHHHHHHHHhhhcc
Confidence 6666 456888899999999999999999998887654
No 56
>2wvg_A PDC, pyruvate decarboxylase; thiamine diphosphate, lyase, flavoprotein, metal-binding, alcohol fermentation; HET: TPU; 1.75A {Zymomonas mobilis} PDB: 2wva_A* 2wvh_A 3oe1_A* 1zpd_A*
Probab=27.92 E-value=25 Score=40.84 Aligned_cols=79 Identities=9% Similarity=0.013 Sum_probs=47.4
Q ss_pred eEEEEEecCcccCCCchHHHhhhccCCCCCccccEEEEEEeCCcccc-cCC---------C--CCC-----Ccchhh---
Q 002323 392 NMGVLIHGDGSFAGQGVVYETLHLSALPNYTTGGTIHIVVNNQVAFT-TDP---------R--AGR-----SSQYCT--- 451 (936)
Q Consensus 392 ~v~v~~hGDgA~sGQGvv~EtLNlA~LP~Y~~GGtIhIV~NNQigfT-T~~---------~--~~r-----ss~y~t--- 451 (936)
.++++..|=|+++.-.-++|+ .++++| +|+|+-+-..... +.. . ++. -+.|+.
T Consensus 67 ~v~~~TsGpG~~N~~~gia~A-~~~~vP------ll~itg~~~~~~~~~~~~~~~~~g~~~~~d~~~~~~~~tk~~~~v~ 139 (568)
T 2wvg_A 67 AAAVVTYSVGALSAFDAIGGA-YAENLP------VILISGAPNNNDHAAGHVLHHALGKTDYHYQLEMAKNITAAAEAIY 139 (568)
T ss_dssp EEEEECTTTTHHHHHHHHHHH-HHTTCC------EEEEEEECCGGGTTTTCBCTTSCSSSCCCHHHHHHTTSCSCEEEEC
T ss_pred eEEEEeCCCCHHHHHHHHHHH-hhhCCC------EEEEeCCCChhHhccCcceeeeccccchHHHHHHHHhhEeEEEEeC
Confidence 788888888887766667775 356999 9999876543221 000 0 110 011211
Q ss_pred --HHHHHHHHHHHHHHHccCCCEEEEEE
Q 002323 452 --DAVVHVCELAAEWRQKFHSDVVVDLV 477 (936)
Q Consensus 452 --DAV~~a~~~A~e~rr~f~~pvlIdlv 477 (936)
+.+...++.|+..+..++|||.|++=
T Consensus 140 ~~~~~~~~l~~A~~~A~~~~GPV~l~iP 167 (568)
T 2wvg_A 140 TPEEAPAKIDHVIKTALREKKPVYLEIA 167 (568)
T ss_dssp SGGGHHHHHHHHHHHHHHHTCCEEEEEE
T ss_pred CHHHHHHHHHHHHHHHHhCCCCEEEEec
Confidence 14445556666666666799999873
No 57
>1t9b_A Acetolactate synthase, mitochondrial; acetohydroxyacid synthase, herbicide, sulfonylurea, thiamin diphosphate, FAD, inhibitor; HET: 1CS P25 FAD NSP P22 YF3; 2.20A {Saccharomyces cerevisiae} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1n0h_A* 1t9a_A* 1t9c_A* 1t9d_A* 1jsc_A*
Probab=27.72 E-value=38 Score=40.55 Aligned_cols=79 Identities=11% Similarity=0.078 Sum_probs=50.4
Q ss_pred eEEEEEecCcccCCCchHHHhhhccCCCCCccccEEEEEEeCCcccccCCC----CCC-----Ccchhh-----HHHHHH
Q 002323 392 NMGVLIHGDGSFAGQGVVYETLHLSALPNYTTGGTIHIVVNNQVAFTTDPR----AGR-----SSQYCT-----DAVVHV 457 (936)
Q Consensus 392 ~v~v~~hGDgA~sGQGvv~EtLNlA~LP~Y~~GGtIhIV~NNQigfTT~~~----~~r-----ss~y~t-----DAV~~a 457 (936)
.++++..|=|+++.-.-++|+. ++++| +|+|+-+-....--.-. ++. -+.|+. +.+.++
T Consensus 147 gvv~~TsGpG~~N~~~gia~A~-~d~vP------llvItG~~~~~~~g~~a~Q~~Dq~~i~~~~tk~~~~v~~~~~i~~~ 219 (677)
T 1t9b_A 147 GVVLVTSGPGATNVVTPMADAF-ADGIP------MVVFTGQVPTSAIGTDAFQEADVVGISRSCTKWNVMVKSVEELPLR 219 (677)
T ss_dssp EEEEECSTHHHHTTHHHHHHHH-HHTCC------EEEEEEECCTTTTTSCCTTCCCHHHHTGGGSSEEEECCSGGGHHHH
T ss_pred EEEEECCChHHHHHHHHHHHHH-HcCCC------EEEEeCCCChhhcCCCCccccCHHHHhhhheeEEEEcCCHHHHHHH
Confidence 7888888989888767777764 44999 99998753221100000 000 011221 267778
Q ss_pred HHHHHHHHHcc-CCCEEEEEE
Q 002323 458 CELAAEWRQKF-HSDVVVDLV 477 (936)
Q Consensus 458 ~~~A~e~rr~f-~~pvlIdlv 477 (936)
++.|+..+..+ .|||+|++=
T Consensus 220 i~~A~~~A~~grpGPV~l~lP 240 (677)
T 1t9b_A 220 INEAFEIATSGRPGPVLVDLP 240 (677)
T ss_dssp HHHHHHHHHSSSCCEEEEEEE
T ss_pred HHHHHHHHhhCCCceEEEEcC
Confidence 88888888877 489999985
No 58
>1q6z_A BFD, BFDC, benzoylformate decarboxylase; lyase, carbon-carbon, mandelate catabolism, T thiazolone diphosphate, inhibitor, high resolution; HET: TZD; 1.00A {Pseudomonas putida} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1po7_A* 1pi3_A* 3fsj_X* 1mcz_A* 1bfd_A* 2fwn_A* 3fzn_A* 2fn3_A* 2v3w_A* 1yno_A* 3f6b_X* 3f6e_X*
Probab=25.65 E-value=61 Score=37.16 Aligned_cols=74 Identities=14% Similarity=0.072 Sum_probs=49.6
Q ss_pred eEEEEEecCcccCCCchHHHhhhccCCCCCccccEEEEEEe---------------CCcccccCCCCCCCcchhh-----
Q 002323 392 NMGVLIHGDGSFAGQGVVYETLHLSALPNYTTGGTIHIVVN---------------NQVAFTTDPRAGRSSQYCT----- 451 (936)
Q Consensus 392 ~v~v~~hGDgA~sGQGvv~EtLNlA~LP~Y~~GGtIhIV~N---------------NQigfTT~~~~~rss~y~t----- 451 (936)
.++++..|=|+++.-.-++|+ .++++| +|+|+-+ ||.++..+. +.|+.
T Consensus 65 ~v~~~tsGpG~~N~~~~l~~A-~~~~~P------ll~itg~~~~~~~~~~~~q~~~d~~~~~~~~-----~k~~~~v~~~ 132 (528)
T 1q6z_A 65 AFINLHSAAGTGNAMGALSNA-WNSHSP------LIVTAGQQTRAMIGVEALLTNVDAANLPRPL-----VKWSYEPASA 132 (528)
T ss_dssp EEEEEEHHHHHHHTHHHHHHH-HHTTCC------EEEEEEECCHHHHTTTCTTCCTTGGGSSTTS-----CSCEECCSSG
T ss_pred EEEEEcCChHHHHHHHHHHHH-hhcCCC------EEEEeCCCcccccCCCcccccccHHHHHHHh-----hHhhhcCCCH
Confidence 677788888988877777775 456999 9999764 333333221 12221
Q ss_pred HHHHHHHHHHHHHHHccC-CCEEEEEE
Q 002323 452 DAVVHVCELAAEWRQKFH-SDVVVDLV 477 (936)
Q Consensus 452 DAV~~a~~~A~e~rr~f~-~pvlIdlv 477 (936)
+.+...++.|+..+..++ |||.|++=
T Consensus 133 ~~~~~~i~~A~~~a~~~~~GPV~l~iP 159 (528)
T 1q6z_A 133 AEVPHAMSRAIHMASMAPQGPVYLSVP 159 (528)
T ss_dssp GGHHHHHHHHHHHHHSSSCCCEEEEEE
T ss_pred HHHHHHHHHHHHHHhcCCCCcEEEEec
Confidence 256667778887777776 69999873
No 59
>3eya_A Pyruvate dehydrogenase [cytochrome]; pyruvate oxidase, membrane-associated flavoprotein dehydrogenase, interactions with lipids cell membrane; HET: TDP FAD; 2.50A {Escherichia coli} PDB: 3ey9_A*
Probab=25.10 E-value=38 Score=39.12 Aligned_cols=37 Identities=16% Similarity=0.350 Sum_probs=29.2
Q ss_pred hhhhccccceEEEEcCCHHHHHHHHHHHHhcCCCCcEEE
Q 002323 784 LRKQIQECNWQIVNVTTPANYFHVLRRQIHRGFRKPLIV 822 (936)
Q Consensus 784 ~~~~~~~~N~~Vv~pstpa~~fhlLrrq~~r~~~~Pli~ 822 (936)
...-.+..+++.+.++++.+....|++++. .++|.+|
T Consensus 487 ~~~~a~a~G~~~~~v~~~~~l~~al~~a~~--~~gp~li 523 (549)
T 3eya_A 487 FARIAEACGITGIRVEKASEVDEALQRAFS--IDGPVLV 523 (549)
T ss_dssp HHHHHHHTTSEEEEECSGGGHHHHHHHHHH--SSSCEEE
T ss_pred HHHHHHHcCCcEEEeCCHHHHHHHHHHHHh--CCCCEEE
Confidence 444455667888888999999999999887 6788765
No 60
>2x7j_A 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene -1-carboxylate synthase; transferase, metal-binding; HET: TPP; 2.35A {Bacillus subtilis}
Probab=23.12 E-value=55 Score=38.32 Aligned_cols=79 Identities=16% Similarity=0.059 Sum_probs=52.4
Q ss_pred eEEEEEecCcccCCCchHHHhhhccCCCCCccccEEEEEEeCCcc------c-ccCCCCC--CCcchhh---H-------
Q 002323 392 NMGVLIHGDGSFAGQGVVYETLHLSALPNYTTGGTIHIVVNNQVA------F-TTDPRAG--RSSQYCT---D------- 452 (936)
Q Consensus 392 ~v~v~~hGDgA~sGQGvv~EtLNlA~LP~Y~~GGtIhIV~NNQig------f-TT~~~~~--rss~y~t---D------- 452 (936)
.++++..|=|+++.-.-++|+. ++++| +|+|+-+-... + +++.... .-+.|+. +
T Consensus 96 gv~~~TsGpG~~N~~~gia~A~-~~~vP------lv~ItG~~~~~~~g~~~~Q~~d~~~~~~~~tk~~~~v~~~~~~~~~ 168 (604)
T 2x7j_A 96 VLLICTSGTAAANFYPAVVEAH-YSRVP------IIVLTADRPHELREVGAPQAINQHFLFGNFVKFFTDSALPEESPQM 168 (604)
T ss_dssp EEEEECSSHHHHTTHHHHHHHH-HHTCC------EEEEEEECCGGGSSSCCTTCCCCTTTTGGGSSCEEECCCCCCSHHH
T ss_pred EEEEECChhHHHHHHHHHHHHh-hcCCC------EEEEeCCCCHHHhCCCCCCcCcHHHHhhhheeeeeecCCCcccchh
Confidence 7888888999998778888876 56999 99998653221 1 1111000 0012221 1
Q ss_pred --HHHHHHHHHHHHHHcc-CCCEEEEEE
Q 002323 453 --AVVHVCELAAEWRQKF-HSDVVVDLV 477 (936)
Q Consensus 453 --AV~~a~~~A~e~rr~f-~~pvlIdlv 477 (936)
.+..+++.|+..+..+ .|||+|++=
T Consensus 169 ~~~~~~~i~~A~~~A~~~~~GPV~l~iP 196 (604)
T 2x7j_A 169 LRYIRTLASRAAGEAQKRPMGPVHVNVP 196 (604)
T ss_dssp HHHHHHHHHHHHHHHHSSSCCEEEEEEE
T ss_pred HHHHHHHHHHHHHHhhCCCCCcEEEEcc
Confidence 2788899999988885 599999874
No 61
>1ybh_A Acetolactate synthase, chloroplast; acetohydroxyacid synthase, herbicide, sulfonylurea, thiamin diphosphate, FAD, inhibitor; HET: CIE NHE FAD P22; 2.50A {Arabidopsis thaliana} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1yhy_A* 1yhz_A* 1yi0_A* 1yi1_A* 1z8n_A* 3ea4_A* 3e9y_A*
Probab=23.01 E-value=35 Score=39.83 Aligned_cols=78 Identities=14% Similarity=0.103 Sum_probs=49.2
Q ss_pred eEEEEEecCcccCCCchHHHhhhccCCCCCccccEEEEEEeCCcccccCCC----CCC-----Ccchhh-----HHHHHH
Q 002323 392 NMGVLIHGDGSFAGQGVVYETLHLSALPNYTTGGTIHIVVNNQVAFTTDPR----AGR-----SSQYCT-----DAVVHV 457 (936)
Q Consensus 392 ~v~v~~hGDgA~sGQGvv~EtLNlA~LP~Y~~GGtIhIV~NNQigfTT~~~----~~r-----ss~y~t-----DAV~~a 457 (936)
.++++..|=|+++.-.-++|+. ++++| +|+|+-.-....--.-. ++. -+.|+. +.+.++
T Consensus 77 ~v~~~TsGpG~~N~~~gv~~A~-~~~vP------ll~itg~~~~~~~g~~~~Q~~d~~~~~~~~~k~~~~v~~~~~i~~~ 149 (590)
T 1ybh_A 77 GICIATSGPGATNLVSGLADAL-LDSVP------LVAITGQVPRRMIGTDAFQETPIVEVTRSITKHNYLVMDVEDIPRI 149 (590)
T ss_dssp EEEEECTTHHHHTTHHHHHHHH-HHTCC------EEEEEEECCGGGTTTTCTTCCCHHHHHGGGSSEEEECCCGGGHHHH
T ss_pred EEEEeccCchHHHHHHHHHHHH-hhCCC------EEEEeCcCCccccCCCcccccCHHHHHHHHhCeEEecCCHHHHHHH
Confidence 6778888888887666666654 45999 99998764321110000 000 011111 267888
Q ss_pred HHHHHHHHHccC-CCEEEEE
Q 002323 458 CELAAEWRQKFH-SDVVVDL 476 (936)
Q Consensus 458 ~~~A~e~rr~f~-~pvlIdl 476 (936)
++.|+..+..++ |||+|++
T Consensus 150 l~~A~~~a~~~~~GPV~l~i 169 (590)
T 1ybh_A 150 IEEAFFLATSGRPGPVLVDV 169 (590)
T ss_dssp HHHHHHHHHSSSCCEEEEEE
T ss_pred HHHHHHHHhhCCCceEEEEe
Confidence 888888888775 8999987
No 62
>2pgn_A Cyclohexane-1,2-dione hydrolase (CDH); three alpha/beta domains; HET: P6G FAD TPP; 1.20A {Azoarcus SP} PDB: 2pgo_A*
Probab=22.79 E-value=1.4e+02 Score=34.78 Aligned_cols=78 Identities=15% Similarity=0.069 Sum_probs=53.5
Q ss_pred eEEEEEecCcccCCCchHHHhhhccCCCCCccccEEEEEEeCCcc-------ccc-CCCCC-CCcchhh-----HHHHHH
Q 002323 392 NMGVLIHGDGSFAGQGVVYETLHLSALPNYTTGGTIHIVVNNQVA-------FTT-DPRAG-RSSQYCT-----DAVVHV 457 (936)
Q Consensus 392 ~v~v~~hGDgA~sGQGvv~EtLNlA~LP~Y~~GGtIhIV~NNQig-------fTT-~~~~~-rss~y~t-----DAV~~a 457 (936)
.++++..|=|+++.-.-++|+. ++++| +|+|+-+-... +-+ +.... .-+.|+. +.+...
T Consensus 70 ~v~~~TsGpG~~N~~~gv~~A~-~~~vP------ll~itg~~~~~~~~~~~~~Q~~d~~~~~~~tk~~~~v~~~~~~~~~ 142 (589)
T 2pgn_A 70 AAVGAWHCVGNLLLHAAMQEAR-TGRIP------AVHIGLNSDGRLAGRSEAAQQVPWQSFTPIARSTQRVERLDKVGEA 142 (589)
T ss_dssp CEEEEEEGGGGGGCHHHHHHHH-HTTCC------EEEEEEESCGGGTTCTTCSSCCCGGGGTTTSSEEEECCSGGGHHHH
T ss_pred EEEEEecCchHHHHHHHHHHHH-hcCCC------EEEEecCCcccccCCCCcccccChhhccccEEEEeecCCHHHHHHH
Confidence 7899999999999888888886 67999 99998764321 111 10000 0012221 267788
Q ss_pred HHHHHHHHHccC-CCEEEEE
Q 002323 458 CELAAEWRQKFH-SDVVVDL 476 (936)
Q Consensus 458 ~~~A~e~rr~f~-~pvlIdl 476 (936)
++.|+..+..++ |||.|++
T Consensus 143 i~~A~~~A~~~~~GPV~l~i 162 (589)
T 2pgn_A 143 IHEAFRVAEGHPAGPAYVDI 162 (589)
T ss_dssp HHHHHHHHTSSSCCEEEEEE
T ss_pred HHHHHHHHhcCCCccEEEEe
Confidence 888888888877 9999987
No 63
>1bwx_A Parathyroid hormone; peptide hormone, solution structure; NMR {Homo sapiens} SCOP: j.15.1.1 PDB: 1zwf_A 1zwg_A* 2l1x_A
Probab=21.67 E-value=41 Score=25.93 Aligned_cols=18 Identities=28% Similarity=0.780 Sum_probs=15.7
Q ss_pred cccCCHHHHHHHHHHhCC
Q 002323 208 MHIADRDQCNWLRDKIET 225 (936)
Q Consensus 208 ~hi~~~e~r~Wl~~~iE~ 225 (936)
.|+.+.+.+.||++++|.
T Consensus 13 ~~~q~~~R~~WLq~~L~~ 30 (39)
T 1bwx_A 13 KHLNSMERVEWLRKKLQD 30 (39)
T ss_dssp SSCSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 378899999999999885
No 64
>4feg_A Pyruvate oxidase; carbanion, structure activity relationship, oxidation-reduct umpolung, thiamine diphosphate, reaction intermediate; HET: TDM FAD GOL; 1.09A {Lactobacillus plantarum} PDB: 4fee_A* 1y9d_A* 2ez9_A* 2ez4_A* 2ez8_A* 2ezt_A* 2ezu_A* 1pow_A* 1pox_A*
Probab=20.01 E-value=81 Score=36.91 Aligned_cols=39 Identities=13% Similarity=0.176 Sum_probs=29.2
Q ss_pred hhhhccccceEEEEcCCHHHHHHHHHHHHhcCCCCcEEE
Q 002323 784 LRKQIQECNWQIVNVTTPANYFHVLRRQIHRGFRKPLIV 822 (936)
Q Consensus 784 ~~~~~~~~N~~Vv~pstpa~~fhlLrrq~~r~~~~Pli~ 822 (936)
+.+..+..++..+.+.++.+....|++++....++|.+|
T Consensus 502 ~~~~a~a~G~~~~~v~~~~~l~~al~~a~~~~~~gP~lI 540 (603)
T 4feg_A 502 FSKIADGVHMQAFRVNKIEQLPDVFEQAKAIAQHEPVLI 540 (603)
T ss_dssp HHHHHHHTTCEEEEECBGGGHHHHHHHHHHHTTTSCEEE
T ss_pred HHHHHHHCCCeEEEECCHHHHHHHHHHHHHhcCCCcEEE
Confidence 344455567888888999999999999872137789875
Done!