Query 002324
Match_columns 936
No_of_seqs 378 out of 2231
Neff 5.7
Searched_HMMs 46136
Date Thu Mar 28 21:31:28 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002324.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/002324hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02900 alanyl-tRNA synthetas 100.0 3E-244 6E-249 2194.2 85.0 852 48-920 1-858 (936)
2 KOG0188 Alanyl-tRNA synthetase 100.0 4E-244 8E-249 2047.3 63.3 800 58-900 2-806 (895)
3 COG0013 AlaS Alanyl-tRNA synth 100.0 1E-240 2E-245 2107.2 76.3 786 57-919 5-801 (879)
4 TIGR00344 alaS alanine--tRNA l 100.0 2E-229 5E-234 2059.1 78.2 786 62-919 1-793 (851)
5 PRK00252 alaS alanyl-tRNA synt 100.0 2E-224 5E-229 2023.0 77.6 780 57-920 1-787 (865)
6 TIGR03683 A-tRNA_syn_arch alan 100.0 8E-200 2E-204 1804.3 73.3 724 56-918 54-830 (902)
7 PRK13902 alaS alanyl-tRNA synt 100.0 2E-198 4E-203 1791.8 73.6 725 56-919 57-827 (900)
8 PRK01584 alanyl-tRNA synthetas 100.0 5E-197 1E-201 1699.6 53.4 584 58-797 1-592 (594)
9 PF01411 tRNA-synt_2c: tRNA sy 100.0 4E-179 9E-184 1561.0 15.3 545 62-637 1-552 (552)
10 cd00673 AlaRS_core Alanyl-tRNA 100.0 2E-110 4E-115 867.7 18.8 230 60-306 1-232 (232)
11 PLN02961 alanine-tRNA ligase 100.0 2.7E-44 5.8E-49 379.9 23.5 209 567-796 2-222 (223)
12 COG2872 Predicted metal-depend 100.0 4.8E-44 1E-48 377.7 22.1 226 541-802 11-239 (241)
13 KOG2105 Predicted metal-depend 100.0 1.4E-33 3.1E-38 295.7 23.9 308 545-913 24-334 (415)
14 PRK12305 thrS threonyl-tRNA sy 99.8 3.5E-19 7.5E-24 212.7 19.0 145 642-804 8-163 (575)
15 PRK12444 threonyl-tRNA synthet 99.8 2E-18 4.2E-23 208.6 22.7 144 642-803 74-231 (639)
16 PLN02837 threonine-tRNA ligase 99.8 1.3E-18 2.7E-23 208.9 19.7 159 627-803 30-203 (614)
17 PRK00413 thrS threonyl-tRNA sy 99.8 3E-18 6.4E-23 207.1 21.4 148 639-804 67-228 (638)
18 TIGR00418 thrS threonyl-tRNA s 99.7 3.2E-16 6.9E-21 187.0 16.2 143 644-803 1-156 (563)
19 PLN02908 threonyl-tRNA synthet 99.7 8.5E-16 1.8E-20 186.9 20.1 178 578-804 88-279 (686)
20 COG0441 ThrS Threonyl-tRNA syn 99.4 3.7E-12 8.1E-17 150.6 14.2 138 642-799 28-172 (589)
21 PF07973 tRNA_SAD: Threonyl an 99.3 1.4E-12 3.1E-17 104.2 5.7 44 735-794 1-44 (44)
22 smart00863 tRNA_SAD Threonyl a 99.0 2.3E-10 5E-15 91.1 4.3 44 735-794 1-44 (44)
23 PRK14799 thrS threonyl-tRNA sy 96.6 0.0043 9.3E-08 74.6 7.9 46 758-803 74-124 (545)
24 cd00768 class_II_aaRS-like_cor 96.0 0.022 4.7E-07 58.8 8.1 114 61-182 3-135 (211)
25 KOG1637 Threonyl-tRNA syntheta 95.4 0.0066 1.4E-07 69.9 1.8 36 642-679 68-103 (560)
26 PRK09348 glyQ glycyl-tRNA synt 94.3 0.63 1.4E-05 50.6 12.6 177 56-312 2-180 (283)
27 TIGR00388 glyQ glycyl-tRNA syn 93.8 0.41 8.9E-06 52.1 10.3 175 58-312 1-177 (293)
28 PRK14908 glycyl-tRNA synthetas 91.6 1.3 2.9E-05 56.7 12.1 176 57-312 4-181 (1000)
29 cd00733 GlyRS_alpha_core Class 91.0 2.7 5.8E-05 45.8 12.0 173 60-312 2-176 (279)
30 COG0752 GlyQ Glycyl-tRNA synth 90.8 1.6 3.5E-05 47.2 10.0 62 55-132 2-64 (298)
31 cd00669 Asp_Lys_Asn_RS_core As 89.3 0.63 1.4E-05 51.5 5.9 102 61-176 5-116 (269)
32 PF02091 tRNA-synt_2e: Glycyl- 81.5 0.76 1.6E-05 50.2 1.6 172 61-312 2-175 (284)
33 PRK03932 asnC asparaginyl-tRNA 79.7 21 0.00045 42.6 12.9 105 61-175 137-254 (450)
34 cd00670 Gly_His_Pro_Ser_Thr_tR 77.6 12 0.00027 39.6 9.4 106 61-182 6-149 (235)
35 TIGR00458 aspS_arch aspartyl-t 77.4 17 0.00036 43.0 11.1 99 62-176 138-247 (428)
36 PRK00488 pheS phenylalanyl-tRN 77.3 2.8 6.1E-05 47.9 4.5 28 59-86 109-136 (339)
37 PTZ00450 macrophage migration 75.0 2 4.3E-05 41.6 2.2 23 169-191 79-101 (113)
38 KOG1759 Macrophage migration i 70.5 2.8 6.1E-05 40.6 2.0 22 171-192 80-101 (115)
39 KOG1501 Arginine N-methyltrans 69.0 3.8 8.3E-05 47.9 3.0 80 289-370 72-158 (636)
40 PF01411 tRNA-synt_2c: tRNA sy 64.6 1.3 2.8E-05 53.9 -1.9 80 213-318 116-198 (552)
41 PF01422 zf-NF-X1: NF-X1 type 64.2 2.9 6.3E-05 28.4 0.6 9 233-241 12-20 (20)
42 COG0497 RecN ATPase involved i 58.5 92 0.002 38.2 12.0 99 799-897 296-397 (557)
43 PTZ00397 macrophage migration 57.8 11 0.00023 36.3 3.4 29 164-192 74-102 (116)
44 PF01187 MIF: Macrophage migra 51.9 7.3 0.00016 37.4 1.2 22 171-192 79-100 (114)
45 PF06810 Phage_GP20: Phage min 51.6 45 0.00097 34.1 6.9 94 826-927 39-140 (155)
46 TIGR00634 recN DNA repair prot 49.4 1.3E+02 0.0029 36.8 11.8 88 800-887 301-388 (563)
47 PRK10869 recombination and rep 46.8 1.6E+02 0.0035 36.1 11.9 87 802-888 298-384 (553)
48 PTZ00326 phenylalanyl-tRNA syn 44.4 48 0.001 40.0 6.7 123 120-308 358-483 (494)
49 smart00438 ZnF_NFX Repressor o 42.1 11 0.00024 27.3 0.6 11 233-243 12-22 (26)
50 COG0016 PheS Phenylalanyl-tRNA 42.1 25 0.00055 40.3 3.8 122 120-308 193-321 (335)
51 PF01409 tRNA-synt_2d: tRNA sy 42.0 13 0.00028 40.8 1.4 26 59-84 18-43 (247)
52 PF12999 PRKCSH-like: Glucosid 40.1 1E+02 0.0022 32.4 7.5 40 751-792 61-100 (176)
53 KOG4603 TBP-1 interacting prot 36.6 2.9E+02 0.0063 29.0 9.8 43 823-873 102-144 (201)
54 cd00776 AsxRS_core Asx tRNA sy 35.4 47 0.001 37.8 4.6 101 60-176 27-138 (322)
55 KOG2783 Phenylalanyl-tRNA synt 34.8 18 0.0004 41.8 1.2 26 290-318 297-322 (436)
56 PF08317 Spc7: Spc7 kinetochor 34.7 1.9E+02 0.0042 32.9 9.4 22 902-927 272-293 (325)
57 PF04728 LPP: Lipoprotein leuc 31.1 2E+02 0.0043 24.8 6.4 27 849-875 14-40 (56)
58 cd00777 AspRS_core Asp tRNA sy 30.2 27 0.00059 39.0 1.6 104 61-176 5-116 (280)
59 PF05008 V-SNARE: Vesicle tran 29.3 1.8E+02 0.004 25.7 6.5 38 830-869 41-78 (79)
60 PTZ00401 aspartyl-tRNA synthet 29.0 98 0.0021 38.0 6.1 99 62-176 218-328 (550)
61 PF06698 DUF1192: Protein of u 28.7 1.6E+02 0.0035 25.6 5.5 31 842-872 18-48 (59)
62 PLN02853 Probable phenylalanyl 27.6 51 0.0011 39.7 3.3 33 52-84 215-247 (492)
63 PRK10884 SH3 domain-containing 27.0 4E+02 0.0087 28.6 9.6 23 850-872 137-159 (206)
64 PF04420 CHD5: CHD5-like prote 26.9 1.2E+02 0.0026 31.1 5.5 48 826-878 45-92 (161)
65 cd00776 AsxRS_core Asx tRNA sy 26.4 35 0.00075 38.8 1.6 28 288-315 290-317 (322)
66 COG2024 Phenylalanyl-tRNA synt 26.3 53 0.0012 38.1 3.0 58 237-307 279-343 (536)
67 TIGR00462 genX lysyl-tRNA synt 25.4 37 0.0008 38.3 1.6 104 61-180 5-124 (304)
68 PF10224 DUF2205: Predicted co 25.1 2.2E+02 0.0047 26.3 6.1 40 824-873 19-58 (80)
69 cd00777 AspRS_core Asp tRNA sy 24.5 1.4E+02 0.003 33.4 5.8 28 288-315 248-275 (280)
70 PRK14063 exodeoxyribonuclease 24.0 61 0.0013 29.4 2.4 32 437-468 6-37 (76)
71 PLN02850 aspartate-tRNA ligase 23.9 1.3E+02 0.0028 36.8 5.9 98 61-175 229-339 (530)
72 PF15372 DUF4600: Domain of un 23.6 2E+02 0.0043 28.8 6.0 76 849-932 5-80 (129)
73 PF01361 Tautomerase: Tautomer 23.3 64 0.0014 27.0 2.3 29 164-192 16-44 (60)
74 KOG1159 NADP-dependent flavopr 22.7 42 0.00091 40.2 1.4 109 17-161 199-313 (574)
75 PF06156 DUF972: Protein of un 22.5 2.7E+02 0.0059 26.9 6.6 29 849-877 26-54 (107)
76 TIGR01834 PHA_synth_III_E poly 22.5 2.2E+02 0.0048 32.6 6.9 27 847-873 291-317 (320)
77 PRK14064 exodeoxyribonuclease 22.5 68 0.0015 29.0 2.4 32 437-468 7-38 (75)
78 PF00152 tRNA-synt_2: tRNA syn 22.4 48 0.001 37.7 1.7 106 61-176 26-141 (335)
79 PRK14066 exodeoxyribonuclease 22.2 69 0.0015 29.0 2.3 31 438-468 6-36 (75)
80 COG0104 PurA Adenylosuccinate 22.1 1.9E+02 0.004 34.3 6.3 167 277-465 55-229 (430)
81 PRK14067 exodeoxyribonuclease 21.9 69 0.0015 29.4 2.3 32 437-468 8-39 (80)
82 PRK12295 hisZ ATP phosphoribos 21.9 1.7E+02 0.0037 34.1 6.1 118 54-182 1-136 (373)
83 PF11382 DUF3186: Protein of u 21.5 5.7E+02 0.012 29.1 10.0 66 849-917 43-108 (308)
84 TIGR01280 xseB exodeoxyribonuc 21.5 75 0.0016 28.1 2.4 31 438-468 3-33 (67)
85 PLN02850 aspartate-tRNA ligase 21.3 46 0.001 40.6 1.4 29 288-316 494-522 (530)
86 TIGR00457 asnS asparaginyl-tRN 20.8 50 0.0011 39.5 1.5 28 288-315 417-444 (453)
87 cd06008 NF-X1-zinc-finger Pres 20.8 39 0.00085 27.8 0.5 11 233-243 22-32 (49)
88 PRK01964 4-oxalocrotonate taut 20.8 1.1E+02 0.0023 26.1 3.1 30 163-192 16-45 (64)
89 PRK00977 exodeoxyribonuclease 20.6 76 0.0017 29.0 2.3 32 437-468 11-42 (80)
90 TIGR00013 taut 4-oxalocrotonat 20.6 1.2E+02 0.0026 25.4 3.4 30 163-192 16-45 (63)
91 PTZ00425 asparagine-tRNA ligas 20.6 50 0.0011 40.7 1.5 29 288-316 550-578 (586)
92 PF01343 Peptidase_S49: Peptid 20.5 1.2E+02 0.0026 30.6 4.0 68 418-485 83-153 (154)
93 TIGR00443 hisZ_biosyn_reg ATP 20.3 2.5E+02 0.0054 31.7 6.9 117 60-190 11-149 (314)
94 PRK06462 asparagine synthetase 20.3 53 0.0011 37.6 1.5 107 61-176 34-152 (335)
95 PF07106 TBPIP: Tat binding pr 20.2 6.8E+02 0.015 25.6 9.5 27 846-872 110-136 (169)
96 cd00775 LysRS_core Lys_tRNA sy 20.2 51 0.0011 37.6 1.4 23 293-315 302-324 (329)
No 1
>PLN02900 alanyl-tRNA synthetase
Probab=100.00 E-value=3e-244 Score=2194.19 Aligned_cols=852 Identities=71% Similarity=1.106 Sum_probs=790.7
Q ss_pred ccCCCCcCcCCChhHHHHHHHHhhhcCCCeeecCCCcccCCCCCcceeccccccccccccCCCCCCCccccccccccccc
Q 002324 48 MPGADPQVVEWPATKVRDTFFKFFEDKNHVNWKSSPVVPVNDPTLLFANAGMNQYKPIFLGTADPNTQLSKLTRACNTQK 127 (936)
Q Consensus 48 ~~~~~~~~~~~~~~eiR~~Fl~fF~~~gH~~v~ssslvp~~DptllFtnAGM~qFK~~flG~~~p~~~~~~~~r~~~~Qk 127 (936)
||+.+.-.++||++|||++||+||++|||+++|||||||+|||||||||||||||||||+|+++|++++++|+|+|||||
T Consensus 1 ~~~~~~~~~~~~~~eiR~~Fl~FF~~~gH~~v~s~slvp~~dptllftnAGm~~Fk~~f~G~~~p~~~~~~~~R~~~~Qk 80 (936)
T PLN02900 1 MPEDDAPEKEWPGDRIRRTFLSFFESKGHTFLPSSPLVPVDDPTLLFTNAGMNQFKPIFLGTADPNTPLRKLPRATNTQK 80 (936)
T ss_pred CCCCccccCCCCHHHHHHHHHHHHHhCCCEEeCCCCcCCCCCCCeeeeecchhhhhhhhcCCCCCCCCCCCCCceeeecc
Confidence 78888888899999999999999999999999999999999999999999999999999999999887788999999999
Q ss_pred ccccCCCCCCCCCCCCCCCcccccccccccccccccHHHHHHHHHHHchhccCCCCCceEEEEECCCCcCCCCCcHHHHH
Q 002324 128 CIRAGGKHNDLDDVGKDTYHHTFFEMLGNWSFGDYFKNEAIEWAWELLTKVYRLPADRLYATYFGGDEKAGLAPDNEARD 207 (936)
Q Consensus 128 CiR~gGKhNDld~VG~t~rHhTfFEMLGnfSFGdYfK~eAI~~awe~Lt~~l~l~~~rL~vTv~~~d~~~~~~~D~Ea~~ 207 (936)
|||+|||||||||||+|+|||||||||||||||||||+|||.|||||||++|||||+|||||||+||+++ |+|+||++
T Consensus 81 CiR~gGKHnDlenVG~t~rHhTfFEMlGnfSfgdYfK~eaI~~awe~lT~~l~i~~~~l~vTv~~~D~~~--~~d~Ea~~ 158 (936)
T PLN02900 81 CIRAGGKHNDLDDVGKDTYHHTFFEMLGNWSFGDYFKKEAIGWAWELLTKVYGLPADRLYATYFGGDEKQ--APDDEARA 158 (936)
T ss_pred cccCCCCCCCHhhccCCCCchHHHHhhhccchhhhhHHHHHHHHHHHHHHhcCCCHHHEEEEEeCCCCCc--CCCHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999874 99999999
Q ss_pred HHHhcCCCCCcccCCCCCCcccCCCCCCCcCceeeEeecCCCCCCCCCCCCCCCCeeEEeeecccccccCCCCccccCCC
Q 002324 208 IWLKFLPASRVLPFGCKDNFWEMGDTGPCGPCSEIHYDRTGNRDAASLVNNDDPTCIEIWNIVFIQFNRESDGSLKPLPA 287 (936)
Q Consensus 208 iW~~~v~~~rI~~~g~~dNfW~mG~~GPCGPCsEI~yD~~~~~~~~~~~~~~~~~~lEiWNlVFmq~~r~~~g~l~~Lp~ 287 (936)
||+++||++||+++|.+||||+||+||||||||||||||++++++.++++.||+|||||||||||||||++||+|+|||+
T Consensus 159 iW~~~~~~~rI~~~~~~dNfW~~G~tGpcGPcsEi~yD~g~~~~~~~~~~~~~~r~lEiwNlVFmq~~~~~~g~~~~Lp~ 238 (936)
T PLN02900 159 IWLDYLPEERVLPFGCKDNFWEMGDTGPCGPCSEIHYDRIGERDAADLVNNDDPRFIEIWNLVFIQFNREADGSLKPLPA 238 (936)
T ss_pred HHHHhCCHHHeecCCcccCCccCCCCcCCCCCeEEEEecCCccCccccCCCCCCCEEEEeeeeeeeeeecCCCceeeCCC
Confidence 99999999999999999999999999999999999999998877766678899999999999999999999999999999
Q ss_pred CccccCchHHHHHHHHhCCCCCccccccHHHHHHHHHHhCCCCCCCCCCCCccccccchhhhhhhhhhhhheeecCCCcc
Q 002324 288 KHVDTGLGFERLTSILQNKMSNYDTDVFMPIFDAIQQATGARPYSGKVGADDADKVDMAYRVVADHIRTLSFAIADGSCP 367 (936)
Q Consensus 288 ~~IDTGmGLERl~~vlqg~~snydtDlF~pii~~i~~~~~~~~y~g~~~~~~~~~~d~a~rvIaDH~R~~~f~iaDG~~P 367 (936)
||||||||||||||||||++||||||+|.|||+.|++++|+++|+|....++.+..++||||||||+||++|||+||++|
T Consensus 239 ~~IDTGmGLERl~~vlqg~~snydtDlf~pii~~i~~~~~~~~~~~~~y~~~~~~~~~a~rviaDH~R~~~f~i~DGv~P 318 (936)
T PLN02900 239 KHVDTGMGLERLASILQNKPSNYDTDLFMPIFDAIQEATGARPYAGKVGAEDDDRVDMAYRVVADHIRTLSFAIADGVVP 318 (936)
T ss_pred CeeecCcCHHHHHHHHcCCCCcchhhhHHHHHHHHHHHhCCCccccccccccccccceeeeeehhhHHHHHHHHhcCCcc
Confidence 99999999999999999999999999999999999999998889876543332456799999999999999999999999
Q ss_pred CCCCCchHHHHHHHHHHHHHHhhhCCCccchhhHHHHHHHHhCCCChhhHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002324 368 GNEGREYVLRRILRRAVRYGSEVLKAQDGFFNGLVNIVVKVMGDVFPELKQREAHIREIIAAEEASFGKTLLKGIEKFKK 447 (936)
Q Consensus 368 sN~GrGYvLRrilRRa~r~~~~~lg~~~~fl~~lv~~v~~~m~~~ypel~~~~~~I~~vi~~Ee~~F~~tl~~g~~~l~~ 447 (936)
||+|||||||||||||+|||+.+||++.|||++||+.|++.|++.||||.++++.|++||..||++|.+||++|+++|++
T Consensus 319 sN~grgYvlRrilRRa~r~~~~~lg~~~~fl~~lv~~v~~~~~~~ypel~~~~~~I~~ii~~EE~~F~~tl~~G~~~l~~ 398 (936)
T PLN02900 319 SNEGRGYVLRRLLRRAVRYGRLLLGAEEGFFPALVEVVVELSGDVFPEVKKNEKRITEIIAEEELSFGKTLEKGIEKFKK 398 (936)
T ss_pred CCCCccHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHhccCcHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999544899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhc---CCCCChhhhhheeccCCCChhhHHHHHHHcCceeChhhHHHHHHHHHHHhHhhhhcccCCccccchHHHHH
Q 002324 448 AAQDVQ---GKVLSGQDAFILWDTYGFPLDLTQLMAEERGLLVDIEGFNNAMDEARERSRSAQNKQAGGAIVMDADATAA 524 (936)
Q Consensus 448 ~~~~~~---~~~l~g~~af~LydTyGfP~dlt~~~a~e~g~~vd~~~f~~~~~~~~~~sr~~~~~~~~~~~~~~~~~~~~ 524 (936)
++++++ ++.|||++||+||||||||+|||++||+|+|++||+++|+++|++||++||++++......+..+...+..
T Consensus 399 ~i~~~~~~~~~~l~g~~af~LydTyGfP~dlt~~ia~e~g~~vD~~~F~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~ 478 (936)
T PLN02900 399 ALAAAKANGGPVLSGKDAFLLYDTYGFPVDLTELMAEERGVTVDMEGFEAAMEEARERSRAAHLKAGGGAIELAAEATSW 478 (936)
T ss_pred HHHHHhhcCCCcCCHHHHHHHHhccCCCHHHHHHHHHHcCCeecHHHHHHHHHHHHHHHHhhhhccccccccccHHHHHH
Confidence 998765 36899999999999999999999999999999999999999999999999876532221111223233344
Q ss_pred HhhcCCCCcccccCccccee-eeEEEEEEEeCCeeeeeccCCCeEEEEeeceeEEEccCCeeeccceeecccc-eEEEEE
Q 002324 525 LHKRGVLATDDSFKFIWFQD-HKSVIKAIYTGSEFIESVVPGNEVGIVLASSSFYAEQGGQIFDEGFIEGLFG-SFYVRN 602 (936)
Q Consensus 525 l~~~~~~~t~~~~~Y~y~~~-~~a~Vl~i~~~~~~v~~~~~~~~~~VvLD~T~FYpEgGGQ~~D~G~I~~~~~-~~~V~d 602 (936)
+.....+++.+|.||+ ..+ ++|+|++++.+++.|+++..++.+.|+||+|+|||||||||+|+|+|..+++ .+.|.+
T Consensus 479 ~~~~~~~~~t~f~gY~-~~~~~~~~v~~i~~~~~~v~~~~~g~~~~vvLd~T~FYpEgGGQp~D~G~I~~~~~~~~~V~d 557 (936)
T PLN02900 479 LQKQGVAATDDFLKYD-WLSDHEAVVKAILTGGGFVESVSEGDEVGIVLDKTSFYAESGGQIGDTGVLEGSGGAVVEVSD 557 (936)
T ss_pred HHhccCCCCCcccccc-cCCccceEEEEEEECCceeeeccCCCeEEEEEeCCCCCCCCCCCCCCEEEEecCCCCEEEEEE
Confidence 4332223333599999 455 8999999998888899998888899999999999999999999999986665 799999
Q ss_pred EEEeCCEEEEEEEeecCCcccCCCCEEEEEEcHhhhhhHHhhhhHHHHHHHHHHHHhCCccccccccccCCceEEEecCC
Q 002324 603 VQIYGGFVIHIGSLTEGAGRFSVGEEVICKVDYDRRKLIAPNHTCTHMLNFALREVLGDHVDQKGSVVLPEKLRFDFSHG 682 (936)
Q Consensus 603 v~k~~g~i~H~~~~~~~~g~l~~G~~V~~~VD~erR~~~m~~HTAtHLL~aALr~vlG~~v~q~Gs~v~~d~lrfDF~~~ 682 (936)
|++.+|.|+|++.+.. +.+.+|++|.++|||+||+++|++|||+|||++||+++||.|+.|.|++++++++||||+++
T Consensus 558 v~k~~g~i~H~~~~~~--g~l~~G~~V~~~VD~~rR~~~m~~HTAtHLL~aALr~vlG~~v~q~Gs~v~~d~~r~Df~~~ 635 (936)
T PLN02900 558 VQKAGGFVLHIGTVTE--GSVSVGDAVTCKVDYDRRRRIAPNHTATHLLNSALKEVLGDHVDQKGSLVAFEKLRFDFSHG 635 (936)
T ss_pred EEEECCEEEEEEEecc--CCCCCCCEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHcCCcEEeccccccCCeEEEEeeCC
Confidence 9999999999987654 78999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHhcCCEEEEEcCHHHHHhhcCcccccCCcCCCCEEEEEEcccccccccCCCCCcccce-ee
Q 002324 683 KPVDPEHLRRIESIVNEQIKAELDVFSKEATLAEAKCINGLRAVFGEVYPDPVRVVAIGRKVEDLLADPENKEWLSI-SA 761 (936)
Q Consensus 683 ~~ls~eeL~~IE~~vNeiI~~nlpV~~~~~~~eEA~~~~g~~alfgE~y~d~VRVV~Ig~~~~~ll~~p~~~~~~~~-sv 761 (936)
+++|++++.+||+.||++|++|+||++.+++++||+++.|++++|+++|++.||||+|+ ++ |.
T Consensus 636 ~~lt~eel~~IE~~vNe~I~~n~pV~~~~~~~eEA~~~~g~~~~f~e~y~~~VRVV~Ig----------------~~~d~ 699 (936)
T PLN02900 636 KPMTPEELREVESLVNEWIGDALPVEAKEMPLADAKRINGLRAVFGEKYPDPVRVVSVG----------------GVYSM 699 (936)
T ss_pred CCCCHHHHHHHHHHHHHHHHhCCCeEEEEcCHHHHhhccChHhhcCCCCCCcEEEEEEC----------------Cccce
Confidence 99999999999999999999999999999999999997799999999999999999998 56 99
Q ss_pred eeccCcccccccccccEEEEeEeeccCCceEEEEEeChhHHHHHHHHHHHHHHHHHHhcccchhhHHHHHHHHhhhccCC
Q 002324 762 ELCGGTHLSNTREAEAFALLSEEGIAKGIRRITAVTTGLAYKAFEAACSLEKEVDDASKIEGSLLEKTVASLKSKVDGAA 841 (936)
Q Consensus 762 elCgGTHV~nTgeIg~fkI~s~ssi~kGvrRIeavtG~~A~~~~~~~~~~~~~l~~ll~~~~~~~~~~v~~l~~~l~~~~ 841 (936)
++||||||+|||+||.|+|++++++++|++||+|+||.+|++++++..+++++++.++++...++.+.|.+|..+|+.+.
T Consensus 700 elCGGTHV~nTgeIG~fkIls~~~~~~G~rRIe~v~G~~A~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~~~ 779 (936)
T PLN02900 700 ELCGGTHVSNTAEAEAFKLLSEEGIAKGIRRITAVTGGAAVEAINAADSLERELDSALKVEGSDLEKKVASLKSRVDAAV 779 (936)
T ss_pred eCCCCCcCCccccCceEEEEEEeeecCCeEEEEEEEcHHHHHHHHHHHHHHHHHHHHhCCCcccchhhhhhhhhhhcccc
Confidence 99999999999999999999999999999999999999999999999999999999999988889999999999999999
Q ss_pred CCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCccEEEEEccCCCCHHHHHHHHHHHHhhhh
Q 002324 842 IPAPKKADIRAKIALLQNQVRKAQKKVAEENLQKAVKVATETAEAAASNGKPFCISRVEVGLDAAAVREAVLKVIEQKV 920 (936)
Q Consensus 842 ip~~~~~~l~~~l~~l~~~~~~~~k~~~~l~~~~a~~~~~~l~~~~~~~~~~~~v~~~~~~~d~~~Lr~~~d~l~~k~~ 920 (936)
||+++++++.+++++|++++++++|++++++.+++...++++++++...+.++++..++.+.++++||++++.++++.+
T Consensus 780 ~~~~~~~el~~~v~~l~~e~k~l~k~~~~l~~~la~~~~~~l~~~~~~~~~~~~v~~~~~~~d~~~Lr~la~~l~~~~~ 858 (936)
T PLN02900 780 IPAAKKEEIRARVSALQKELRAAQKEAAALRAKLAVAKATELASKALSAGKSVLVARLDVGVDAAALKEAAEKVIAKLG 858 (936)
T ss_pred cccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCeEEEEEecCCCCHHHHHHHHHHHHhhcC
Confidence 9999999999999999999999999999999999999999998876654446777777656899999999999998864
No 2
>KOG0188 consensus Alanyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=3.5e-244 Score=2047.30 Aligned_cols=800 Identities=57% Similarity=0.946 Sum_probs=747.5
Q ss_pred CChhHHHHHHHHhhhcCCCeeecCCCcccCCCCCcceeccccccccccccCCCCCCCcccccccccccccccccCCCCCC
Q 002324 58 WPATKVRDTFFKFFEDKNHVNWKSSPVVPVNDPTLLFANAGMNQYKPIFLGTADPNTQLSKLTRACNTQKCIRAGGKHND 137 (936)
Q Consensus 58 ~~~~eiR~~Fl~fF~~~gH~~v~ssslvp~~DptllFtnAGM~qFK~~flG~~~p~~~~~~~~r~~~~QkCiR~gGKhND 137 (936)
||++|||++||+||++|.|++|+||||||.+||||||+|||||||||+|||+ +++++||+|+|||||+||||||
T Consensus 2 ~ta~evR~tFldfF~~k~H~~V~SSsViP~dDpTLLFaNAGMNQFKpifLgt------~a~lkRa~NsQKCIRAGGKHND 75 (895)
T KOG0188|consen 2 LTASEVRKTFLDFFKSKHHKIVHSSSVIPFDDPTLLFANAGMNQFKPIFLGT------MAKLKRAANSQKCIRAGGKHND 75 (895)
T ss_pred ccHHHHHHHHHHHHHhcCceEeccCCcccCCCCeeEEeccchhhcchhhhhc------hhhhHhhhhhhhHHhccCCcCC
Confidence 8999999999999999999999999999999999999999999999999998 3468999999999999999999
Q ss_pred CCCCCCCCCcccccccccccccccccHHHHHHHHHHHchhccCCCCCceEEEEECCCCcCCCCCcHHHHHHHHhc-CCCC
Q 002324 138 LDDVGKDTYHHTFFEMLGNWSFGDYFKNEAIEWAWELLTKVYRLPADRLYATYFGGDEKAGLAPDNEARDIWLKF-LPAS 216 (936)
Q Consensus 138 ld~VG~t~rHhTfFEMLGnfSFGdYfK~eAI~~awe~Lt~~l~l~~~rL~vTv~~~d~~~~~~~D~Ea~~iW~~~-v~~~ 216 (936)
||+||+|.|||||||||||||||||||+|||.|||||||++||||+||||||||+||+++|||+|.||++||+++ ||++
T Consensus 76 LdDVGkD~yHhTfFEMlGNWSFGdYfK~Eac~~AwelLt~vygi~~dRLYVtYF~Gde~~Gl~~D~E~r~iW~~~Gvp~s 155 (895)
T KOG0188|consen 76 LDDVGKDFYHHTFFEMLGNWSFGDYFKEEACAWAWELLTFVYGIPTDRLYVTYFGGDEKLGLEPDLECREIWNELGVPDS 155 (895)
T ss_pred hhHhchhccccCchhhcCCCCcchHHHHHHHHHHHHHHHHhhcCCCceEEEEEecCccccCCCCCcHHHHHHHHcCCChh
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999999 9999
Q ss_pred CcccCCCCCCcccCCCCCCCcCceeeEeecCCCCCCCCCCCCCCCCeeEEeeecccccccCCCCccccCCCCccccCchH
Q 002324 217 RVLPFGCKDNFWEMGDTGPCGPCSEIHYDRTGNRDAASLVNNDDPTCIEIWNIVFIQFNRESDGSLKPLPAKHVDTGLGF 296 (936)
Q Consensus 217 rI~~~g~~dNfW~mG~~GPCGPCsEI~yD~~~~~~~~~~~~~~~~~~lEiWNlVFmq~~r~~~g~l~~Lp~~~IDTGmGL 296 (936)
||+++|.+|||||||+||||||||||||||+|+++++.|||.|+|+++||||||||||||++||+|.|||+|||||||||
T Consensus 156 rILp~~~kDNFWEMGdtGPCGPCtEIHyDriG~r~a~~LVN~ddp~v~EiWNlVFiq~NRe~dGsL~pLp~khIDTGMGf 235 (895)
T KOG0188|consen 156 RILPFGMKDNFWEMGDTGPCGPCTEIHYDRIGGRDAVKLVNHDDPDVLEIWNIVFIQYNREADGSLKPLPKKHIDTGMGF 235 (895)
T ss_pred hccCCccccchhhhcCCCCCCcchhhhhhhhcCcchHHHhcCCCcCceeeeeeeeeeeccccCCccccCcccccccccCH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhCCCCCccccccHHHHHHHHHHhCCCCCCCCCCCCccccccchhhhhhhhhhhhheeecCCCccCCCCCchHH
Q 002324 297 ERLTSILQNKMSNYDTDVFMPIFDAIQQATGARPYSGKVGADDADKVDMAYRVVADHIRTLSFAIADGSCPGNEGREYVL 376 (936)
Q Consensus 297 ERl~~vlqg~~snydtDlF~pii~~i~~~~~~~~y~g~~~~~~~~~~d~a~rvIaDH~R~~~f~iaDG~~PsN~GrGYvL 376 (936)
|||++|||+|.||||||+|.|||++|++.++++ |+| ++.+.+|+||||+|||+||+|+|||||+.|+|+||||||
T Consensus 236 ERLvsVlQnk~SNYDTDlFtPif~aiq~~~~~~-YtG----~d~d~~D~AyRVvADH~RtlTvalsDG~~Pdn~GrgyvL 310 (895)
T KOG0188|consen 236 ERLVSVLQNKTSNYDTDLFTPIFEAIQEGTGAR-YTG----EDADGIDTAYRVVADHARTLTVALSDGGVPDNTGRGYVL 310 (895)
T ss_pred HHHHHHHhcccccccchhhHHHHHHHHHhcCCC-ccC----CccccchhhHHHHHHHhhhhheeeecCCCCCCCCChhHH
Confidence 999999999999999999999999999999997 987 456789999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhhCCCccchhhHHHHHHHHhCCCChhhHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC-C
Q 002324 377 RRILRRAVRYGSEVLKAQDGFFNGLVNIVVKVMGDVFPELKQREAHIREIIAAEEASFGKTLLKGIEKFKKAAQDVQG-K 455 (936)
Q Consensus 377 RrilRRa~r~~~~~lg~~~~fl~~lv~~v~~~m~~~ypel~~~~~~I~~vi~~Ee~~F~~tl~~g~~~l~~~~~~~~~-~ 455 (936)
|||||||+||++++||++++||.+|||+|++.||++||||+.+++.|.++|..||+.|++||++|.++|++.++.+++ +
T Consensus 311 RRILRRavrya~e~l~~~~g~~~~LVpvvv~~lgd~fPEl~~~~~~v~diineEE~~F~ktl~rg~~~f~r~~~~~~~s~ 390 (895)
T KOG0188|consen 311 RRILRRAVRYAHEKLNAPPGFFSTLVPVVVETLGDAFPELKRDPQHVIDIINEEEAQFLKTLDRGRKLFDRVARELGSSK 390 (895)
T ss_pred HHHHHHHHHHHHHHhCCCcchhhhhhHHHHHHHhhhchhhhcCHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHhcCCCC
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999998864 7
Q ss_pred CCChhhhhheeccCCCChhhHHHHHHHcCceeChhhHHHHHHHHHHHhHhhhhcccCCccccchHHHHHHhhcCCCCccc
Q 002324 456 VLSGQDAFILWDTYGFPLDLTQLMAEERGLLVDIEGFNNAMDEARERSRSAQNKQAGGAIVMDADATAALHKRGVLATDD 535 (936)
Q Consensus 456 ~l~g~~af~LydTyGfP~dlt~~~a~e~g~~vd~~~f~~~~~~~~~~sr~~~~~~~~~~~~~~~~~~~~l~~~~~~~t~~ 535 (936)
+|||+++|.||||||||+|||++||+|+|+.||+++|+++.++.+++|+.+.+...+ +.+++ +++| +|+|+|
T Consensus 391 tipGd~~w~LydTyGfPvdlt~lmAee~gl~iD~~~fE~ar~~A~~~Sk~~~~~~~~--i~ldv--l~el----~p~TdD 462 (895)
T KOG0188|consen 391 TIPGDVAWRLYDTYGFPVDLTELMAEEKGLKIDETGFEAARQEAQEKSKGAGGGKLS--IDLDV--LSEL----VPPTDD 462 (895)
T ss_pred cCchHHHHHHHhhcCCcHHHHHHHHHHhCCccCchhHHHHHHHHHHHHhccCCCCCc--ccHHH--HHhh----CCCCCC
Confidence 999999999999999999999999999999999999999999999999876443322 33333 4444 699999
Q ss_pred ccCcccceeeeEEEEEEEeCCeeeeeccCCCeEEEEeeceeEEEccCCeeeccceeecccc---eEEEEEEEEeCCEEEE
Q 002324 536 SFKFIWFQDHKSVIKAIYTGSEFIESVVPGNEVGIVLASSSFYAEQGGQIFDEGFIEGLFG---SFYVRNVQIYGGFVIH 612 (936)
Q Consensus 536 ~~~Y~y~~~~~a~Vl~i~~~~~~v~~~~~~~~~~VvLD~T~FYpEgGGQ~~D~G~I~~~~~---~~~V~dv~k~~g~i~H 612 (936)
+++|.-...++++|++++.++.+++++..|++++|+||+|+||+|+|||.+|+|.|...+. .+.|..++. ||+|+|
T Consensus 463 s~KY~~~~~~~~~il~l~~e~~~v~~~~~g~~~givldktnFYaEqGGQ~~D~G~lv~~~~~~~~fnV~~~~~-gg~vvh 541 (895)
T KOG0188|consen 463 SFKYNEFGVCKTRILALYREDQFVESIPKGQECGIVLDKTNFYAEQGGQIYDTGKLVIDGDEDFVFNVKRVQV-GGYVVH 541 (895)
T ss_pred ccccccCccchhhhhhhhcCCceeeecCCCceEEEEeecceeehhcCCcccccceEEEecCccceeehhhccc-CCEEEE
Confidence 9999525678999999999999999999999999999999999999999999999975443 455555565 899999
Q ss_pred EEEeecCCcccCCCCEEEEEEcHhhhhhHHhhhhHHHHHHHHHHHHhCCccccccccccCCceEEEecCCCCCCHHHHHH
Q 002324 613 IGSLTEGAGRFSVGEEVICKVDYDRRKLIAPNHTCTHMLNFALREVLGDHVDQKGSVVLPEKLRFDFSHGKPVDPEHLRR 692 (936)
Q Consensus 613 ~~~~~~~~g~l~~G~~V~~~VD~erR~~~m~~HTAtHLL~aALr~vlG~~v~q~Gs~v~~d~lrfDF~~~~~ls~eeL~~ 692 (936)
++.. . +.+++||+|.+.+|.+||+.+|+||||||||++|||+++ ..+.|+||+|.||++||||++..++|.+++++
T Consensus 542 ~g~l-~--~~l~vgdqv~~~~De~rR~~im~nHTaTHlLN~aLr~~l-~~t~QkGSlV~pdklRfDf~~k~~lt~eql~~ 617 (895)
T KOG0188|consen 542 IGVL-E--GDLSVGDQVELHVDEERRQLIMRNHTATHLLNFALRQVL-KGTDQKGSLVAPDKLRFDFSTKGALTKEQLKK 617 (895)
T ss_pred Eeee-c--cccccchhHHHHhhHHHHHHHhhcchHHHHHHHHHHHhc-ccccccccccChhHeeeecccCCCCCHHHHHH
Confidence 9986 3 899999999999999999999999999999999999999 56789999999999999999988999999999
Q ss_pred HHHHHHHHHHhcCCEEEEEcCHHHHHhhcCcccccCCcCCCCEEEEEEcccccccccCCCCCcccceeeeeccCcccccc
Q 002324 693 IESIVNEQIKAELDVFSKEATLAEAKCINGLRAVFGEVYPDPVRVVAIGRKVEDLLADPENKEWLSISAELCGGTHLSNT 772 (936)
Q Consensus 693 IE~~vNeiI~~nlpV~~~~~~~eEA~~~~g~~alfgE~y~d~VRVV~Ig~~~~~ll~~p~~~~~~~~svelCgGTHV~nT 772 (936)
+|+.+|++|.++.+|+.+++++++|++++|+|++|+|.||++||||++|. +..+++|+|||||+.||
T Consensus 618 vE~~~ne~I~~~~~V~~~e~~l~~ak~i~glr~v~~E~YPdpVRVVsvg~-------------~~~~svE~CgGTH~~~t 684 (895)
T KOG0188|consen 618 VEDKINEFIQKNAPVYAKELPLAEAKKIPGLRAVFDEVYPDPVRVVSVGA-------------GQLTSVEFCGGTHLTNT 684 (895)
T ss_pred HHHHHHHHHhcCCceEEEecCHHHHhcCCCcccccCCccCCceEEEEecc-------------ccccceeecCCcccccc
Confidence 99999999999999999999999999999999999999999999999984 23579999999999999
Q ss_pred cccccEEEEeEeeccCCceEEEEEeChhHHHHHHHHHHHHHHHHHHhcccchhhHHHHHHHHhhhccCCCCCCChhhHHH
Q 002324 773 REAEAFALLSEEGIAKGIRRITAVTTGLAYKAFEAACSLEKEVDDASKIEGSLLEKTVASLKSKVDGAAIPAPKKADIRA 852 (936)
Q Consensus 773 geIg~fkI~s~ssi~kGvrRIeavtG~~A~~~~~~~~~~~~~l~~ll~~~~~~~~~~v~~l~~~l~~~~ip~~~~~~l~~ 852 (936)
|+||.|.|++++++++|+|||.||||++|.++.+.+++ +...+......++++++.+...+..+.||++.++++++
T Consensus 685 ~~i~~fvI~se~~iakgirRivavTG~eA~~a~~~a~~----~~~~~~~~~~~~~kei~~l~~~~~~a~iP~~~k~~~~~ 760 (895)
T KOG0188|consen 685 SHIGDFVIVSEEGIAKGIRRIVAVTGKEAQEALRLAED----LDKDLRKTDKALEKEIQELGENLDHAVIPYWQKDEIRE 760 (895)
T ss_pred cccceEEEechhhhhhceeEEEEeccHHHHHHHHHHHH----HHhhhcccchhhHHHHHHHHHhhccccchHHhHHHHHH
Confidence 99999999999999999999999999999999988774 22222222367889999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCccEEEEEcc
Q 002324 853 KIALLQNQVRKAQKKVAEENLQKAVKVATETAEAAASNGKPFCISRVE 900 (936)
Q Consensus 853 ~l~~l~~~~~~~~k~~~~l~~~~a~~~~~~l~~~~~~~~~~~~v~~~~ 900 (936)
+++++++.++++.|..++..++.....++++.+. ..+.+++|..++
T Consensus 761 ~~k~~~K~~~d~~ra~~~~~qk~~l~~~~~~~~~--~~~~~~~v~~~~ 806 (895)
T KOG0188|consen 761 LLKKLQKRMDDLSRALKAAVQKEVLEEAKQLKES--NPNQPLLVHYIE 806 (895)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc--CCCCCEEEEEec
Confidence 9999999999999999988888777777777653 456778888886
No 3
>COG0013 AlaS Alanyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.1e-240 Score=2107.20 Aligned_cols=786 Identities=46% Similarity=0.777 Sum_probs=727.0
Q ss_pred CCChhHHHHHHHHhhhcCCCeeecCCCcccCCCCCcceeccccccccccccCCCCCCCcccccccccccccccccCCCCC
Q 002324 57 EWPATKVRDTFFKFFEDKNHVNWKSSPVVPVNDPTLLFANAGMNQYKPIFLGTADPNTQLSKLTRACNTQKCIRAGGKHN 136 (936)
Q Consensus 57 ~~~~~eiR~~Fl~fF~~~gH~~v~ssslvp~~DptllFtnAGM~qFK~~flG~~~p~~~~~~~~r~~~~QkCiR~gGKhN 136 (936)
.||++|||++||+||++|||+++|||||||+||||||||||||+||||||+|.++||+ .|+||||||||+ |
T Consensus 5 ~~t~~EiR~~FL~FF~~kgH~~v~s~slVP~nDptLLftnAGm~~FK~~f~g~v~p~~-----~r~~~sQkcIR~----N 75 (879)
T COG0013 5 KLTTNEIRQKFLDFFEKKGHTVVPSSPLVPRNDPTLLFTNAGMVQFKPYFTGGVTPPA-----NRAVTSQKCIRT----N 75 (879)
T ss_pred cCCHHHHHHHHHHHHHHCCCeecCCCCcCCCCCCCeEEeecccccchhhhcCCCCCCC-----CCeecccccccc----C
Confidence 3999999999999999999999999999999999999999999999999999977764 499999999999 8
Q ss_pred CCCCCCCCCCcccccccccccccccccHHHHHHHHHHHchhccCCCCCceEEEEECCCCcCCCCCcHHHHHHHHhc--CC
Q 002324 137 DLDDVGKDTYHHTFFEMLGNWSFGDYFKNEAIEWAWELLTKVYRLPADRLYATYFGGDEKAGLAPDNEARDIWLKF--LP 214 (936)
Q Consensus 137 Dld~VG~t~rHhTfFEMLGnfSFGdYfK~eAI~~awe~Lt~~l~l~~~rL~vTv~~~d~~~~~~~D~Ea~~iW~~~--v~ 214 (936)
||||||+|+|||||||||||||||||||+|||.|||||||++|||||||||||||+ +||||+++|+++ +|
T Consensus 76 DieNVG~T~RHhTfFEMLGNfSFGdYFKeeAI~~AwEflT~~lgl~~ekL~vtvy~--------~Ddea~~~W~~~~gip 147 (879)
T COG0013 76 DIDNVGYTARHHTFFEMLGNFSFGDYFKEEAIEFAWEFLTKVLGLPKEKLYVTVYE--------DDDEAYNEWEKIIGIP 147 (879)
T ss_pred chhhcCccccchhHHHhhhcCchhHHHHHHHHHHHHHHHHhhcCCCHHHEEEEEec--------CchHHHHHHHhhcCCC
Confidence 99999999999999999999999999999999999999999999999999999997 699999999998 99
Q ss_pred CCCcccCCCCCCcccCCCCCCCcCceeeEeecCCCCCC--CCCCCCCCCCeeEEeeecccccccC-CCCccccCCCCccc
Q 002324 215 ASRVLPFGCKDNFWEMGDTGPCGPCSEIHYDRTGNRDA--ASLVNNDDPTCIEIWNIVFIQFNRE-SDGSLKPLPAKHVD 291 (936)
Q Consensus 215 ~~rI~~~g~~dNfW~mG~~GPCGPCsEI~yD~~~~~~~--~~~~~~~~~~~lEiWNlVFmq~~r~-~~g~l~~Lp~~~ID 291 (936)
++||+|+|.+||||+||+ ||||||||||||||+..++ ...+++|+||||||||||||||||+ .+|+|.|||+||||
T Consensus 148 ~~rIir~~~~dNfW~~G~-GPcGPcsEI~yD~G~~~~~~~~~~~~~d~dR~lEiwNLVFmQfnr~~~~g~~~~Lp~k~ID 226 (879)
T COG0013 148 PERIIRIGASDNFWEMGD-GPCGPCSEIFYDRGEEIGGGPPGSPDEDGDRYLEIWNLVFMQYNRDPGDGNYTPLPKKNID 226 (879)
T ss_pred HHHeeecCcCCCCCCCCC-cCCCCceEEEEcCCcccCCCCCCCcCCCCCceEEEeeeeehhhccCCCCCCcccCCCCCcc
Confidence 999999999999999999 9999999999999865443 3567899999999999999999999 79999999999999
Q ss_pred cCchHHHHHHHHhCCCCCccccccHHHHHHHHHHhCCCCCCCCCCCCccccccchhhhhhhhhhhhheeecCCCccCCCC
Q 002324 292 TGLGFERLTSILQNKMSNYDTDVFMPIFDAIQQATGARPYSGKVGADDADKVDMAYRVVADHIRTLSFAIADGSCPGNEG 371 (936)
Q Consensus 292 TGmGLERl~~vlqg~~snydtDlF~pii~~i~~~~~~~~y~g~~~~~~~~~~d~a~rvIaDH~R~~~f~iaDG~~PsN~G 371 (936)
||||||||+|||||++||||||+|+|||+.+++++|.. |.. +.+..+++|||||||+||++|||+||++|||+|
T Consensus 227 TGmGLERi~~vlQ~~~tnyd~dlf~~ii~~~e~~~g~~-~~~-----~~~~~~~s~rVIADH~Rs~~f~iaDGv~PSNeg 300 (879)
T COG0013 227 TGMGLERIAAVLQGVPTNYDTDLFRPIIKAIEKLTGKK-YGE-----DEEDPDVSFRVIADHIRSLAFMIADGVLPSNEG 300 (879)
T ss_pred cCccHHHHHHHHcCCCcchhhhhhHHHHHHHHHHhCCc-CCc-----cccccceeEEEehhHHHHHHHHHhCCCCcCCCC
Confidence 99999999999999999999999999999999999973 521 222337899999999999999999999999999
Q ss_pred CchHHHHHHHHHHHHHHhhhCCCccchhhHHHHHHHHhCCCChhhHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 002324 372 REYVLRRILRRAVRYGSEVLKAQDGFFNGLVNIVVKVMGDVFPELKQREAHIREIIAAEEASFGKTLLKGIEKFKKAAQD 451 (936)
Q Consensus 372 rGYvLRrilRRa~r~~~~~lg~~~~fl~~lv~~v~~~m~~~ypel~~~~~~I~~vi~~Ee~~F~~tl~~g~~~l~~~~~~ 451 (936)
||||||||||||+||| ++||++.|||++|||++++.|+++||||.++++.|+++|+.||++|.+||++|+++|++++++
T Consensus 301 rGYvlRriiRRa~R~~-~~LG~~~~fl~~LV~~~~~~m~~~ypel~~~~~~I~~vl~~EEe~F~~TL~~G~~l~~~~~~~ 379 (879)
T COG0013 301 RGYVLRRIIRRALRHG-KLLGIKEPFLYKLVDTVIDEMGDAYPELKEKEDFIKEVLKLEEERFAKTLERGLKLLEKELAK 379 (879)
T ss_pred ccHHHHHHHHHHHHHH-HHhCCCchHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999 689999999999999999999999999999999999999999999999999999999999998
Q ss_pred hcC-CCCChhhhhheeccCCCChhhHHHHHHHcCceeChhhHHHHHHHHHHHhHhhhhcccCCccccchHHHHHHhhcCC
Q 002324 452 VQG-KVLSGQDAFILWDTYGFPLDLTQLMAEERGLLVDIEGFNNAMDEARERSRSAQNKQAGGAIVMDADATAALHKRGV 530 (936)
Q Consensus 452 ~~~-~~l~g~~af~LydTyGfP~dlt~~~a~e~g~~vd~~~f~~~~~~~~~~sr~~~~~~~~~~~~~~~~~~~~l~~~~~ 530 (936)
+++ ++|||++||+||||||||+|||++||+|+|++||+++|+.+|++||++||+++ .+.. .........+.. ..
T Consensus 380 ~~~~~~l~ge~afkLYDTyGfP~eLt~eia~e~g~~VD~~~f~~~m~~qr~~ar~~~-~~~~---~~~~~~~~~~~~-~~ 454 (879)
T COG0013 380 LKKSKTLDGEDAFKLYDTYGFPVELTEEIAEERGLKVDEPGFEYAMEAQRERARASA-GSGE---GAKESEDLELID-KL 454 (879)
T ss_pred hccCCccChHHheeehhcCCCCHHHHHHHHHHcCCeeccccHHHHHHHHHHHhhhcc-cccc---ccchhhhhhhhc-cC
Confidence 864 68999999999999999999999999999999999999999999999999754 1111 011111112221 13
Q ss_pred CCcccccCcccceeeeEEEEEEEeCCeeeeeccCCCeEEEEeeceeEEEccCCeeeccceeecc-cceEEEEEEEEeC-C
Q 002324 531 LATDDSFKFIWFQDHKSVIKAIYTGSEFIESVVPGNEVGIVLASSSFYAEQGGQIFDEGFIEGL-FGSFYVRNVQIYG-G 608 (936)
Q Consensus 531 ~~t~~~~~Y~y~~~~~a~Vl~i~~~~~~v~~~~~~~~~~VvLD~T~FYpEgGGQ~~D~G~I~~~-~~~~~V~dv~k~~-g 608 (936)
++|+ |.||+ ..+.+++|++|+.++..|+++.+|+.++||||+||||||||||++|+|+|..+ +..+.|.||||.+ +
T Consensus 455 ~~te-f~gY~-~~~~~~~i~~l~~~~~~v~~~~~g~~~~vVld~TpFYaEsGGQ~~D~G~i~~~~~~~~~V~dvqK~~~~ 532 (879)
T COG0013 455 PETE-FLGYD-DLEMEFKVLVLFVDGKEVSELNEGQEVYVVLDQTPFYAESGGQVGDTGYIFGDGGGRFEVTDVQKVGNG 532 (879)
T ss_pred CCce-eeecc-cccceEEEEEEEecCcccccccCCceEEEEEecCCccCCCCCccCceEEEEecCCcEEEEEEEEEcCCc
Confidence 5565 99999 88888999999988766899999999999999999999999999999999877 4789999999997 9
Q ss_pred EEEEEEEeecCCcccCCCCEEEEEEcHhhhhhHHhhhhHHHHHHHHHHHHhCCccccccccccCCceEEEecCCCCCCHH
Q 002324 609 FVIHIGSLTEGAGRFSVGEEVICKVDYDRRKLIAPNHTCTHMLNFALREVLGDHVDQKGSVVLPEKLRFDFSHGKPVDPE 688 (936)
Q Consensus 609 ~i~H~~~~~~~~g~l~~G~~V~~~VD~erR~~~m~~HTAtHLL~aALr~vlG~~v~q~Gs~v~~d~lrfDF~~~~~ls~e 688 (936)
.++|.+.+.. |.|++|+.|.++|||+||..+|+|||||||||+|||++||.|++|+||+++++++||||+|++++|+|
T Consensus 533 ~~vH~~~~~~--G~l~~gd~V~~~vD~~rR~~~~~nHTATHLLh~ALr~VLG~hV~QaGSlv~~~~lRfDfsH~~~it~E 610 (879)
T COG0013 533 VIVHKGKVES--GELKVGDEVTAEVDEERRRRLMRNHTATHLLHAALRKVLGDHVWQAGSLVDPEKLRFDFSHYKALTAE 610 (879)
T ss_pred eEEEEEeecc--CccCCCCEEEEEECHHHHHHHHhhChHHHHHHHHHHHHhCccceecCcccCCCeeEEeecCCCCCCHH
Confidence 9999999876 89999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhcCCEEEEEcCHHHHHhhcCcccccCCcCCCCEEEEEEcccccccccCCCCCcccceeeeeccCcc
Q 002324 689 HLRRIESIVNEQIKAELDVFSKEATLAEAKCINGLRAVFGEVYPDPVRVVAIGRKVEDLLADPENKEWLSISAELCGGTH 768 (936)
Q Consensus 689 eL~~IE~~vNeiI~~nlpV~~~~~~~eEA~~~~g~~alfgE~y~d~VRVV~Ig~~~~~ll~~p~~~~~~~~svelCgGTH 768 (936)
+|++||+++|++|++|+||++.+|++++|++. |++++|||+|++.||||+|| ++|+|+|||||
T Consensus 611 el~~IE~~vNe~I~~n~~V~~~~m~~~eAk~~-Ga~alfGekY~~~VRVV~ig----------------~~SvElCGGTH 673 (879)
T COG0013 611 ELKEIERLVNEIIRENLPVKTEEMDLDEAKAK-GAMALFGEKYGDEVRVVEIG----------------DFSVELCGGTH 673 (879)
T ss_pred HHHHHHHHHHHHHHcCCceeEEEccHHHHHHh-ChHhhcCCcCCCeEEEEEEC----------------CceeeccCCcc
Confidence 99999999999999999999999999999997 99999999999999999998 68999999999
Q ss_pred cccccccccEEEEeEeeccCCceEEEEEeChhHHHHHHHHHHHHHHHHHHhcccchhhHHHHHHHHhhhccCCCCCCChh
Q 002324 769 LSNTREAEAFALLSEEGIAKGIRRITAVTTGLAYKAFEAACSLEKEVDDASKIEGSLLEKTVASLKSKVDGAAIPAPKKA 848 (936)
Q Consensus 769 V~nTgeIg~fkI~s~ssi~kGvrRIeavtG~~A~~~~~~~~~~~~~l~~ll~~~~~~~~~~v~~l~~~l~~~~ip~~~~~ 848 (936)
|+|||+||.|||++++++++|+|||+|+||..|+++++..++++++++.++++ +.
T Consensus 674 v~~Tg~IG~fkI~~e~~i~aGVrRIeavtG~~a~~~~~~~~~~l~~~a~~lk~-------------------------~~ 728 (879)
T COG0013 674 VSNTGDIGLFKIISEEGIAAGVRRIEAVTGEAALEYLQEQEDLLKEIASLLKV-------------------------PP 728 (879)
T ss_pred cCCccceeeEEEEEecccccCeEEEEEEcCHHHHHHHHHHHHHHHHHHHHhCC-------------------------Ch
Confidence 99999999999999999999999999999999999999999999988888875 33
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---cCCccEEEEEccCCCCHHHHHHHHHHHHhhh
Q 002324 849 DIRAKIALLQNQVRKAQKKVAEENLQKAVKVATETAEAAA---SNGKPFCISRVEVGLDAAAVREAVLKVIEQK 919 (936)
Q Consensus 849 ~l~~~l~~l~~~~~~~~k~~~~l~~~~a~~~~~~l~~~~~---~~~~~~~v~~~~~~~d~~~Lr~~~d~l~~k~ 919 (936)
++..++++++++.++++|++++|+.+++......+...++ .+|+++++..++ +.|++.||.+++.|+++.
T Consensus 729 ~~~~kv~~l~~~~k~lekel~~lk~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~-~~d~~~Lr~~a~~lk~k~ 801 (879)
T COG0013 729 ELLPKVERLLEELKELEKELERLKKKLAAAELADLLSNAKAEEIGGVKVLAKEVD-GADMKELREIADDLKKKL 801 (879)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccceeeCCEEEEEEEec-CCCHHHHHHHHHHHHhhc
Confidence 5556999999999999999999999888887777666543 368999999996 689999999999999965
No 4
>TIGR00344 alaS alanine--tRNA ligase. The model describes alanine--tRNA ligase. This enzyme catalyzes the reaction (tRNAala + L-alanine + ATP = L-alanyl-tRNAala + pyrophosphate + AMP).
Probab=100.00 E-value=2.3e-229 Score=2059.12 Aligned_cols=786 Identities=43% Similarity=0.733 Sum_probs=725.2
Q ss_pred HHHHHHHHhhhcCCCeeecCCCcccCCCCCcceeccccccccccccCCCCCCCcccccccccccccccccCCCCCCCCCC
Q 002324 62 KVRDTFFKFFEDKNHVNWKSSPVVPVNDPTLLFANAGMNQYKPIFLGTADPNTQLSKLTRACNTQKCIRAGGKHNDLDDV 141 (936)
Q Consensus 62 eiR~~Fl~fF~~~gH~~v~ssslvp~~DptllFtnAGM~qFK~~flG~~~p~~~~~~~~r~~~~QkCiR~gGKhNDld~V 141 (936)
|||++||+||++|||+++|||||||+|||||||||||||||||||+|+++|| ++|+||||||||+ ||||||
T Consensus 1 eiR~~fl~fF~~~gH~~v~s~slvp~~dptllf~nAGm~~fk~~f~G~~~p~-----~~r~~~~QkCiR~----nDld~V 71 (851)
T TIGR00344 1 EIRQTFLDFFKEKGHQVIPSASLVPRNDPTLLLTNAGMAQFKPIFTGIVKPP-----SNRLVNAQPCIRL----NDIENV 71 (851)
T ss_pred CHHHHHHHHHHhCCCEEcCCCCcCCCCCCCeeeeccchhhhhHHhcCCCCCC-----CCCcccccccccc----cchhhh
Confidence 6999999999999999999999999999999999999999999999999986 4899999999999 899999
Q ss_pred CCCCCcccccccccccccccccHHHHHHHHHHHchhccCCCCCceEEEEECCCCcCCCCCcHHHHHHHHhc-CCCCCccc
Q 002324 142 GKDTYHHTFFEMLGNWSFGDYFKNEAIEWAWELLTKVYRLPADRLYATYFGGDEKAGLAPDNEARDIWLKF-LPASRVLP 220 (936)
Q Consensus 142 G~t~rHhTfFEMLGnfSFGdYfK~eAI~~awe~Lt~~l~l~~~rL~vTv~~~d~~~~~~~D~Ea~~iW~~~-v~~~rI~~ 220 (936)
|+|+|||||||||||||||||||+|||+|||||||++|||||+|||||||+ .|+||++||+++ ||++||++
T Consensus 72 G~t~rHhTfFEMlGnfSFgdYfK~eai~~awe~lT~~~~i~~~rl~vTv~~--------~D~ea~~iW~~~g~~~~~i~~ 143 (851)
T TIGR00344 72 GRTARHHTFFEMLGNFSFGDYFKEEAIAFAWELLTSVLGLDKERLYVTVYE--------DDEEAYEIWEKHGIPAERIIR 143 (851)
T ss_pred cCCCcchhhHHhhcccchhhhhHHHHHHHHHHHHhhhcCCChHHEEEEEcC--------CCHHHHHHHHhcCCCHHHccc
Confidence 999999999999999999999999999999999999999999999999997 489999999999 99999999
Q ss_pred CCCCCCcccCCCCCCCcCceeeEeecCCC---CCCCCCCCCCCCCeeEEeeecccccccCCCCccccCCCCccccCchHH
Q 002324 221 FGCKDNFWEMGDTGPCGPCSEIHYDRTGN---RDAASLVNNDDPTCIEIWNIVFIQFNRESDGSLKPLPAKHVDTGLGFE 297 (936)
Q Consensus 221 ~g~~dNfW~mG~~GPCGPCsEI~yD~~~~---~~~~~~~~~~~~~~lEiWNlVFmq~~r~~~g~l~~Lp~~~IDTGmGLE 297 (936)
+|.+||||+||+ ||||||||||||+|+. +.+.+++|.||||||||||||||||||++||+|+|||+||||||||||
T Consensus 144 ~~~~dNfW~~G~-GpcGPcsEi~yD~g~~~~~~~~~~~~~~~~~r~lEiwNlVFmq~~~~~~g~~~~Lp~~~IDTGmGLE 222 (851)
T TIGR00344 144 CGDKDNFWDMGD-GPCGPCTEIYYDRGEFVGGKPGEPEFFEENDRYVEVWNLVFMQFNRDPDGNYTPLPKKNIDTGMGLE 222 (851)
T ss_pred CCccCCcCCCCC-cCCccCeEEEEecCcccCCCCCcccccCCCCcEEEEeeeeeEeeeecCCCceeeCCCCeeecCcCHH
Confidence 999999999999 9999999999999643 344567788999999999999999999999999999999999999999
Q ss_pred HHHHHHhCCCCCccccccHHHHHHHHHHhCCCCCCCCCCCCccc--cccchhhhhhhhhhhhheeecCCCccCCCCCchH
Q 002324 298 RLTSILQNKMSNYDTDVFMPIFDAIQQATGARPYSGKVGADDAD--KVDMAYRVVADHIRTLSFAIADGSCPGNEGREYV 375 (936)
Q Consensus 298 Rl~~vlqg~~snydtDlF~pii~~i~~~~~~~~y~g~~~~~~~~--~~d~a~rvIaDH~R~~~f~iaDG~~PsN~GrGYv 375 (936)
||+|||||++||||||+|.|||++|++++|+++|.+..+..|.+ ..++||||||||+||++||||||++|||+|||||
T Consensus 223 Rl~~vlqg~~snydtD~f~~ii~~i~~~~g~~y~~~~~~~~d~~~~~~~~~~rviaDH~R~~~f~i~DGv~PsN~grgYv 302 (851)
T TIGR00344 223 RFVAVLQGVPTNYDTDIFLPLIEKIEEITGVKYDSNNAGIMDEKRVEDLRSLRVIADHTRALAFMLADGVVPSNEGRGYV 302 (851)
T ss_pred HHHHHHcCCCCcchhhhHHHHHHHHHHHhCCCCCcCccccccccccccchheeeehhhhhhhhhhhccCcccCCCCCchh
Confidence 99999999999999999999999999999986554443333322 2346999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhhCCCccchhhHHHHHHHHhCCCChhhHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC
Q 002324 376 LRRILRRAVRYGSEVLKAQDGFFNGLVNIVVKVMGDVFPELKQREAHIREIIAAEEASFGKTLLKGIEKFKKAAQDVQGK 455 (936)
Q Consensus 376 LRrilRRa~r~~~~~lg~~~~fl~~lv~~v~~~m~~~ypel~~~~~~I~~vi~~Ee~~F~~tl~~g~~~l~~~~~~~~~~ 455 (936)
||||||||+||| ++||++.|||++|||.|++.|++.||||.++++.|++||..||++|.+||++|+++|++++++++++
T Consensus 303 lRrilRRa~r~~-~~lg~~~~fl~~lv~~~~~~m~~~ypel~~~~~~i~~ii~~Ee~~f~~tl~~G~~~l~~~~~~~~~~ 381 (851)
T TIGR00344 303 LRRLIRRALRHG-KKLGLKEAFLYKLVPTLIEVLGDYYPELKEKQEFVEQILELEEERFAKTLERGLRLFEKLLKKLGKK 381 (851)
T ss_pred HHHHHHHHHHHH-HHhCCCchHHHHHHHHHHHHHhhhChHhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 999999999999 5799999999999999999999999999999999999999999999999999999999999886556
Q ss_pred CCChhhhhheeccCCCChhhHHHHHHHcCceeChhhHHHHHHHHHHHhHhhhhcccCCccccchHHHHHHhhcCCCCccc
Q 002324 456 VLSGQDAFILWDTYGFPLDLTQLMAEERGLLVDIEGFNNAMDEARERSRSAQNKQAGGAIVMDADATAALHKRGVLATDD 535 (936)
Q Consensus 456 ~l~g~~af~LydTyGfP~dlt~~~a~e~g~~vd~~~f~~~~~~~~~~sr~~~~~~~~~~~~~~~~~~~~l~~~~~~~t~~ 535 (936)
.|||++||+||||||||+|||++||+|+|++||+++|+++|++||++||++++... +..+ +..+.. ..++| +
T Consensus 382 ~i~g~~af~LydTyGfP~dlt~~~a~e~g~~vd~~~F~~~~~~~~~~sr~~~~~~~---~~~~---~~~~~~-~~~~t-~ 453 (851)
T TIGR00344 382 ELDGEDAFKLYDTYGFPVELTKEIAEERGLTVDIPGFETLMAEQRERSKAASQTIS---FELQ---EIALAN-VYPAT-E 453 (851)
T ss_pred ccCHHHHHHHHHccCCCHHHHHHHHHHcCCccCHHHHHHHHHHHHHHHhhhhhccc---cccc---HHHHhc-ccCCc-c
Confidence 89999999999999999999999999999999999999999999999997654321 1122 222322 12445 4
Q ss_pred ccCcccceeeeEEEEEEEeCCeeeeeccCCCeEEEEeeceeEEEccCCeeeccceeecccceEEEEEEEEeCCEEEEEEE
Q 002324 536 SFKFIWFQDHKSVIKAIYTGSEFIESVVPGNEVGIVLASSSFYAEQGGQIFDEGFIEGLFGSFYVRNVQIYGGFVIHIGS 615 (936)
Q Consensus 536 ~~~Y~y~~~~~a~Vl~i~~~~~~v~~~~~~~~~~VvLD~T~FYpEgGGQ~~D~G~I~~~~~~~~V~dv~k~~g~i~H~~~ 615 (936)
|.+|+ ..+++|+|++++.+++.++++..++.+.|+||+|+|||||||||+|+|+|..++..++|.+|++.+|.|+|++.
T Consensus 454 ~l~Y~-~~~~~a~V~~i~~~~~~v~~~~~g~~~~vvLd~T~FYpEgGGQp~D~G~I~~~~~~~~V~dv~~~~g~i~H~~~ 532 (851)
T TIGR00344 454 FLGYE-DLEFEAKVIGLFEDGKPVDEAEAGQSVYVILDQTPFYAESGGQIGDTGYLIANDGKFRVVDVQKPNGVVFHFGE 532 (851)
T ss_pred cccee-cccccEEEEEEEeCCccceecccCCceEEEEeCCCCCCCCCCCCCCEEEEecCCcEEEEEEEEEECCEEEEEEE
Confidence 99999 58899999999988888888888888999999999999999999999999876678999999999999999987
Q ss_pred eecCCcccCCCCEEEEEEcHhhhhhHHhhhhHHHHHHHHHHHHhCCccccccccccCCceEEEecCCCCCCHHHHHHHHH
Q 002324 616 LTEGAGRFSVGEEVICKVDYDRRKLIAPNHTCTHMLNFALREVLGDHVDQKGSVVLPEKLRFDFSHGKPVDPEHLRRIES 695 (936)
Q Consensus 616 ~~~~~g~l~~G~~V~~~VD~erR~~~m~~HTAtHLL~aALr~vlG~~v~q~Gs~v~~d~lrfDF~~~~~ls~eeL~~IE~ 695 (936)
+.. +++++|++|.+.|||+||+.+|++|||+|||++||+++||.+++|.|++++++++||||++++++|++++++||+
T Consensus 533 ~~~--g~l~~G~~V~~~VD~~rR~~~m~~HTAtHLL~aAL~~vlg~~v~q~Gs~v~~d~~r~Df~~~~~lt~eel~~IE~ 610 (851)
T TIGR00344 533 VEG--GSLKVGDKVIAVIDEKRRLRIMRNHSATHLLHAALQKVLGNHVWQAGSLVSVKKLRFDFSHYRALTREELEKIED 610 (851)
T ss_pred ecc--CCCCCCCEEEEEEcHHHHHHHHHHHHHHHHHHHHHHHHhCCceEeccCcccCCcEEEEecCCCCCCHHHHHHHHH
Confidence 654 789999999999999999999999999999999999999999999999999999999999988999999999999
Q ss_pred HHHHHHHhcCCEEEEEcCHHHHHhhcCcccccCCcCCCCEEEEEEcccccccccCCCCCcccceeeeeccCccccccccc
Q 002324 696 IVNEQIKAELDVFSKEATLAEAKCINGLRAVFGEVYPDPVRVVAIGRKVEDLLADPENKEWLSISAELCGGTHLSNTREA 775 (936)
Q Consensus 696 ~vNeiI~~nlpV~~~~~~~eEA~~~~g~~alfgE~y~d~VRVV~Ig~~~~~ll~~p~~~~~~~~svelCgGTHV~nTgeI 775 (936)
.||++|++|+||.+.+++++||++. +.+++|+++|++.||||+|+ ++++++||||||+|||+|
T Consensus 611 ~vNelI~~n~pV~~~~~~~eeA~~~-~~~~~~~e~y~~~VRVV~Ig----------------~~d~e~CgGTHV~nTgeI 673 (851)
T TIGR00344 611 LVNEQILANIPIKVIFMDLDEAKAK-GAFALFGEKYGEKVRVVSVG----------------DVSVELCGGTHVRNTGEI 673 (851)
T ss_pred HHHHHHHhCCceEEEEeCHHHHHhc-chhhhcCCCCCCeEEEEEEC----------------CeeccCCCCCccCChhhC
Confidence 9999999999999999999999996 66778999999999999998 589999999999999999
Q ss_pred ccEEEEeEeeccCCceEEEEEeChhHHHHHHHHHHHHHHHHHHhcccchhhHHHHHHHHhhhccCCCCCCChhhHHHHHH
Q 002324 776 EAFALLSEEGIAKGIRRITAVTTGLAYKAFEAACSLEKEVDDASKIEGSLLEKTVASLKSKVDGAAIPAPKKADIRAKIA 855 (936)
Q Consensus 776 g~fkI~s~ssi~kGvrRIeavtG~~A~~~~~~~~~~~~~l~~ll~~~~~~~~~~v~~l~~~l~~~~ip~~~~~~l~~~l~ 855 (936)
|.|+|++++++++|++||+|+||.+|++++++..+.+++++.+++++ ++++.++++
T Consensus 674 g~~kI~~~~~~~~G~~RIe~v~G~~A~~~~~~~~~~l~~l~~~L~~~------------------------~~~i~~~v~ 729 (851)
T TIGR00344 674 GLFKIVKESGIAAGVRRIEAVTGNAAIEYLNEQEDKLKELADILKVT------------------------PNELPKKIE 729 (851)
T ss_pred eEEEEEEEeEecCCeEEEEEEEcHHHHHHHHHHHHHHHHHHHHhCCC------------------------HHHHHHHHH
Confidence 99999999999999999999999999999999999999988888753 568888999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-CCccEEEEEccCCCCHHHHHHHHHHHHhhh
Q 002324 856 LLQNQVRKAQKKVAEENLQKAVKVATETAEAAAS-NGKPFCISRVEVGLDAAAVREAVLKVIEQK 919 (936)
Q Consensus 856 ~l~~~~~~~~k~~~~l~~~~a~~~~~~l~~~~~~-~~~~~~v~~~~~~~d~~~Lr~~~d~l~~k~ 919 (936)
+|++++++++|++++++.+++...++++.+.++. ++.++++..++ +.|++.||++++.++++.
T Consensus 730 ~l~~e~k~l~k~~~~l~~~l~~~~~~~l~~~~~~~~~~~~i~~~~~-~~d~~~lr~la~~l~~~~ 793 (851)
T TIGR00344 730 RFFEEWKALQKELESLKLKIADQKIDELKDKAETINGVKVLVEVVD-AKDMKSLKTMADRLKSKL 793 (851)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCeEEEEEEcc-CCCHHHHHHHHHHHHhhc
Confidence 9999999999999999999999888888877654 67889988886 569999999999998884
No 5
>PRK00252 alaS alanyl-tRNA synthetase; Reviewed
Probab=100.00 E-value=2.3e-224 Score=2022.97 Aligned_cols=780 Identities=48% Similarity=0.807 Sum_probs=724.8
Q ss_pred CCChhHHHHHHHHhhhcCCCeeecCCCcccCCCCCcceeccccccccccccCCCCCCCcccccccccccccccccCCCCC
Q 002324 57 EWPATKVRDTFFKFFEDKNHVNWKSSPVVPVNDPTLLFANAGMNQYKPIFLGTADPNTQLSKLTRACNTQKCIRAGGKHN 136 (936)
Q Consensus 57 ~~~~~eiR~~Fl~fF~~~gH~~v~ssslvp~~DptllFtnAGM~qFK~~flG~~~p~~~~~~~~r~~~~QkCiR~gGKhN 136 (936)
.||++|||++||+||++|||+++|||||||+|||||||||||||||||||+|+++|| ++|+||||||||+ |
T Consensus 1 ~~~~~eiR~~fl~fF~~~~H~~v~s~~lvp~~d~~llf~nAGm~~fk~~f~g~~~p~-----~~r~~~~QkCiR~----n 71 (865)
T PRK00252 1 MMTSAEIRQKFLDFFESKGHTVVPSASLVPKNDPTLLFTNAGMVQFKDYFLGQEKPP-----YPRATTSQKCIRT----N 71 (865)
T ss_pred CCCHHHHHHHHHHHHHhCCCEEecCCCcCCCCCCCeeeeccchhhhhHHhcCCCCCC-----CCCcccccccccc----c
Confidence 488999999999999999999999999999999999999999999999999999886 4899999999999 8
Q ss_pred CCCCCCCCCCcccccccccccccccccHHHHHHHHHHHchhccCCCCCceEEEEECCCCcCCCCCcHHHHHHHHhc--CC
Q 002324 137 DLDDVGKDTYHHTFFEMLGNWSFGDYFKNEAIEWAWELLTKVYRLPADRLYATYFGGDEKAGLAPDNEARDIWLKF--LP 214 (936)
Q Consensus 137 Dld~VG~t~rHhTfFEMLGnfSFGdYfK~eAI~~awe~Lt~~l~l~~~rL~vTv~~~d~~~~~~~D~Ea~~iW~~~--v~ 214 (936)
||||||+|+|||||||||||||||||||+|||+|||||||++|||||||||||||. +|+||++||++. ||
T Consensus 72 Dld~VG~t~rHhTfFEMlGn~sfgdYfK~eai~~awe~lt~~~~i~~~~l~vt~~~--------~D~e~~~iW~~~~g~~ 143 (865)
T PRK00252 72 DLENVGYTARHHTFFEMLGNFSFGDYFKEEAIEWAWELLTSVLGLPKEKLYVTVYE--------DDDEAYDIWKKEIGVP 143 (865)
T ss_pred chhhccCCCCchHHHHHhcccchhhhhHHHHHHHHHHHHHHHhCCCHHHEEEEEcC--------CCHHHHHHHHhccCCC
Confidence 99999999999999999999999999999999999999999999999999999997 489999999976 99
Q ss_pred CCCcccCCCCCCcccCCCCCCCcCceeeEeecCCCC--CCCCCCCCCCCCeeEEeeecccccccCCCCccccCCCCcccc
Q 002324 215 ASRVLPFGCKDNFWEMGDTGPCGPCSEIHYDRTGNR--DAASLVNNDDPTCIEIWNIVFIQFNRESDGSLKPLPAKHVDT 292 (936)
Q Consensus 215 ~~rI~~~g~~dNfW~mG~~GPCGPCsEI~yD~~~~~--~~~~~~~~~~~~~lEiWNlVFmq~~r~~~g~l~~Lp~~~IDT 292 (936)
++||+++|.+||||+||+|||||||||||||||... ++..++|+|+||||||||||||||||+++|+|.|||+|||||
T Consensus 144 ~~~i~~~~~~dNfW~~G~~GpcGPcsEi~~d~g~~~~~~~~~~~~~~~~~~lEiwNlVF~q~~~~~~g~~~~Lp~~~iDT 223 (865)
T PRK00252 144 PERIIRIGKKDNFWSMGDTGPCGPCSEIFYDRGEEYWGGPPGSPEEDGDRYIEIWNLVFMQFNRDEDGNLTPLPKKNIDT 223 (865)
T ss_pred HHHeecCCccCCccccCCCcCCCCCeEEEEecCcccCCCCCCCCcCCCCcEEEEeeeeeEeeeecCCCceeeCCCCeeec
Confidence 999999999999999999999999999999997543 334578899999999999999999999999999999999999
Q ss_pred CchHHHHHHHHhCCCCCccccccHHHHHHHHHHhCCCCCCCCCCCCccccccchhhhhhhhhhhhheeecCCCccCCCCC
Q 002324 293 GLGFERLTSILQNKMSNYDTDVFMPIFDAIQQATGARPYSGKVGADDADKVDMAYRVVADHIRTLSFAIADGSCPGNEGR 372 (936)
Q Consensus 293 GmGLERl~~vlqg~~snydtDlF~pii~~i~~~~~~~~y~g~~~~~~~~~~d~a~rvIaDH~R~~~f~iaDG~~PsN~Gr 372 (936)
|||||||+|||||++||||||+|.|||++|++++|+ +|. .++||||||||+||++|||+||++|||+||
T Consensus 224 G~GlER~~~ilq~~~snydtd~f~~~i~~i~~~~~~-~y~----------~~~a~rviaDH~R~~~f~i~DG~~Psn~gr 292 (865)
T PRK00252 224 GMGLERIAAVLQGVHSNYETDLFRPLIKAIEELTGV-KYE----------DDVSFRVIADHIRAVAFLIADGVLPSNEGR 292 (865)
T ss_pred CcCHHHHHHHHcCCCCcchhhhHHHHHHHHHHHhCC-CCC----------CCceEEEEcchHHHHHHHHccCcccCCCCc
Confidence 999999999999999999999999999999999997 463 258999999999999999999999999999
Q ss_pred chHHHHHHHHHHHHHHhhhCCCccchhhHHHHHHHHhCCCChhhHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 002324 373 EYVLRRILRRAVRYGSEVLKAQDGFFNGLVNIVVKVMGDVFPELKQREAHIREIIAAEEASFGKTLLKGIEKFKKAAQDV 452 (936)
Q Consensus 373 GYvLRrilRRa~r~~~~~lg~~~~fl~~lv~~v~~~m~~~ypel~~~~~~I~~vi~~Ee~~F~~tl~~g~~~l~~~~~~~ 452 (936)
|||||||||||+|+| +.||++.|||++|||.|++.|++.||||.++++.|++||+.||++|.+||++|+++|++++++.
T Consensus 293 gYvlRrilRRa~r~~-~~lg~~~~~l~~lv~~~~~~~~~~ypel~~~~~~i~~ii~~Ee~~f~~tl~~G~~~~~~~~~~~ 371 (865)
T PRK00252 293 GYVLRRILRRAVRHG-RLLGIKEPFLYKLVPVVIDEMGDAYPELKEKQDLIEKVLKAEEERFLKTLERGLKLLEEALAKL 371 (865)
T ss_pred chHHHHHHHHHHHHH-HHhCCCchHHHHHHHHHHHHHhhhChhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 999999999999999 6899999999999999999999999999999999999999999999999999999999999876
Q ss_pred cC-CCCChhhhhheeccCCCChhhHHHHHHHcCceeChhhHHHHHHHHHHHhHhhhhcccCCccccchHHHHHHhhcCCC
Q 002324 453 QG-KVLSGQDAFILWDTYGFPLDLTQLMAEERGLLVDIEGFNNAMDEARERSRSAQNKQAGGAIVMDADATAALHKRGVL 531 (936)
Q Consensus 453 ~~-~~l~g~~af~LydTyGfP~dlt~~~a~e~g~~vd~~~f~~~~~~~~~~sr~~~~~~~~~~~~~~~~~~~~l~~~~~~ 531 (936)
+. +.|||++||+||||||||+|||++||+|+|++||+++|+++|++||++||+.++.... ...+..+... .
T Consensus 372 ~~~~~l~g~~~f~LydtyGfP~dlt~~~a~e~g~~vd~~~f~~~~~~~~~~s~~~~~~~~~------~~~~~~~~~~-~- 443 (865)
T PRK00252 372 KAGKVLSGEDAFKLYDTYGFPLDLTAEIARERGLTVDEEGFEAAMEEQRERARAARKFKGD------YNALEELLDD-L- 443 (865)
T ss_pred cCCCccCHHHHHHHHhccCCCHHHHHHHHHHcCCCcCHHHHHHHHHHHHHHHHhhhhcccc------hhHHHHHhhc-C-
Confidence 43 5899999999999999999999999999999999999999999999999875432210 1122333221 2
Q ss_pred CcccccCcccceeeeEEEEEEEeCCeeeeeccCCCeEEEEeeceeEEEccCCeeeccceeecccceEEEEEEEEe-CCEE
Q 002324 532 ATDDSFKFIWFQDHKSVIKAIYTGSEFIESVVPGNEVGIVLASSSFYAEQGGQIFDEGFIEGLFGSFYVRNVQIY-GGFV 610 (936)
Q Consensus 532 ~t~~~~~Y~y~~~~~a~Vl~i~~~~~~v~~~~~~~~~~VvLD~T~FYpEgGGQ~~D~G~I~~~~~~~~V~dv~k~-~g~i 610 (936)
+|+ |.||+ ..+++|+|++|+.++++++++.+++.+.|+||+|+|||||||||+|+|+|.. +..+.|.+|++. +|++
T Consensus 444 ~t~-f~~Y~-~~~~~a~v~~i~~~~~~~~~~~~g~~~~vvLd~T~FYpegGGQ~~D~G~I~~-~~~~~V~~v~~~~~g~i 520 (865)
T PRK00252 444 ATE-FVGYD-TLEAEAKVLALFVDGESVDSAKAGEEVEVVLDKTPFYAESGGQVGDTGVIED-GGVFEVTDTQKPPNGLI 520 (865)
T ss_pred CCe-eeeee-eccccEEEEEEEeCCceeeeccCCCeEEEEEeCCCCCCCCCCCCCCEEEEee-CcEEEEEEEEEccCCEE
Confidence 454 89999 6789999999998888899998888899999999999999999999999977 667999999998 9999
Q ss_pred EEEEEeecCCcccCCCCEEEEEEcHhhhhhHHhhhhHHHHHHHHHHHHhCCccccccccccCCceEEEecCCCCCCHHHH
Q 002324 611 IHIGSLTEGAGRFSVGEEVICKVDYDRRKLIAPNHTCTHMLNFALREVLGDHVDQKGSVVLPEKLRFDFSHGKPVDPEHL 690 (936)
Q Consensus 611 ~H~~~~~~~~g~l~~G~~V~~~VD~erR~~~m~~HTAtHLL~aALr~vlG~~v~q~Gs~v~~d~lrfDF~~~~~ls~eeL 690 (936)
+|++.... +++++|++|.++|||+||+++|++|||+|||++||+++||.++.|.|++++++++||||++++++|++++
T Consensus 521 ~H~~~~~~--~~l~~G~~V~~~ID~~rR~~~m~~HTa~HLL~~al~~~lg~~v~q~Gs~~~~~~~r~Df~~~~~lt~eel 598 (865)
T PRK00252 521 VHRGKVEE--GELKVGDEVTAEVDEERRRAIARNHSATHLLHAALREVLGEHVTQAGSLVAPDRLRFDFSHFEALTPEEL 598 (865)
T ss_pred EEEEEecc--CCCCCCCEEEEEEcHHHHHHHHHHHHHHHHHHHHHHHHhhhheEeccCcccCCeEEEEeecCCCCCHHHH
Confidence 99997644 7799999999999999999999999999999999999999999999999999999999999889999999
Q ss_pred HHHHHHHHHHHHhcCCEEEEEcCHHHHHhhcCcccccCCcCCCCEEEEEEcccccccccCCCCCcccceeeeeccCcccc
Q 002324 691 RRIESIVNEQIKAELDVFSKEATLAEAKCINGLRAVFGEVYPDPVRVVAIGRKVEDLLADPENKEWLSISAELCGGTHLS 770 (936)
Q Consensus 691 ~~IE~~vNeiI~~nlpV~~~~~~~eEA~~~~g~~alfgE~y~d~VRVV~Ig~~~~~ll~~p~~~~~~~~svelCgGTHV~ 770 (936)
.+||+.||++|++|+||++.+++++||++. |++++|+++|+++||||+|+ ++++++||||||+
T Consensus 599 ~~IE~~vN~lI~~n~pV~~~~~~~~eA~~~-~~~~~~~~~y~~~VRVV~Ig----------------~~d~~~CgGTHV~ 661 (865)
T PRK00252 599 RKIEDLVNEKIRENLPVETEEMSIEEAKKM-GAMALFGEKYGDEVRVVSIG----------------DFSIELCGGTHVS 661 (865)
T ss_pred HHHHHHHHHHHHhCCCeEEEEeCHHHHHhC-CchhhccccCCCeEEEEEEC----------------CceeeCCCCCccC
Confidence 999999999999999999999999999995 88899999999999999998 5799999999999
Q ss_pred cccccccEEEEeEeeccCCceEEEEEeChhHHHHHHHHHHHHHHHHHHhcccchhhHHHHHHHHhhhccCCCCCCChhhH
Q 002324 771 NTREAEAFALLSEEGIAKGIRRITAVTTGLAYKAFEAACSLEKEVDDASKIEGSLLEKTVASLKSKVDGAAIPAPKKADI 850 (936)
Q Consensus 771 nTgeIg~fkI~s~ssi~kGvrRIeavtG~~A~~~~~~~~~~~~~l~~ll~~~~~~~~~~v~~l~~~l~~~~ip~~~~~~l 850 (936)
|||+||.|+|++.+++++|++||+|+||.+|++++++.++++++++.+++++ +.++
T Consensus 662 nTgeIg~~kI~~~~~~~~g~~RI~~v~G~~A~~~~~~~~~~l~~~~~~l~~~------------------------~~~l 717 (865)
T PRK00252 662 NTGDIGLFKIVSESGVAAGVRRIEAVTGEAALEYLNEQEALLKELAALLKAK------------------------PSEL 717 (865)
T ss_pred CcccCeEEEEEEEeeecCCeEEEEEEECHHHHHHHHHHHHHHHHHHHHhCCC------------------------HHHH
Confidence 9999999999999999999999999999999999999999999999888864 6688
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-CCccEEEEEccCCCCHHHHHHHHHHHHhhhh
Q 002324 851 RAKIALLQNQVRKAQKKVAEENLQKAVKVATETAEAAAS-NGKPFCISRVEVGLDAAAVREAVLKVIEQKV 920 (936)
Q Consensus 851 ~~~l~~l~~~~~~~~k~~~~l~~~~a~~~~~~l~~~~~~-~~~~~~v~~~~~~~d~~~Lr~~~d~l~~k~~ 920 (936)
.++++++++++++++|++++++.+++...++++++++.. ++.++++..++ +.|++.||++++.++++.+
T Consensus 718 ~~~v~~l~~e~k~l~k~~~~l~~~l~~~~~~~l~~~~~~i~~~~~vv~~~~-~~d~~~L~~la~~l~~~~~ 787 (865)
T PRK00252 718 PERVEALLEELKELEKELEQLKAKLAAAAAGDLLAQAKEVNGVKVLAAQVE-GVDAKALRTLADDLKDKLG 787 (865)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhccCCeEEEEEEec-CCCHHHHHHHHHHHHhhcC
Confidence 899999999999999999999999999999888876653 67788887875 7899999999999987754
No 6
>TIGR03683 A-tRNA_syn_arch alanyl-tRNA synthetase. This family of alanyl-tRNA synthetases is limited to the archaea, and is a subset of those sequences identified by the model pfam07973 covering the second additional domain (SAD) of alanyl and threonyl tRNA synthetases.
Probab=100.00 E-value=8.2e-200 Score=1804.28 Aligned_cols=724 Identities=28% Similarity=0.458 Sum_probs=660.0
Q ss_pred cCCChhHHHHHHHHhhhcCCCeeecCCCcccCCCCCcceecccccccccccc-CCCCCCCcccccccccccccccccCCC
Q 002324 56 VEWPATKVRDTFFKFFEDKNHVNWKSSPVVPVNDPTLLFANAGMNQYKPIFL-GTADPNTQLSKLTRACNTQKCIRAGGK 134 (936)
Q Consensus 56 ~~~~~~eiR~~Fl~fF~~~gH~~v~ssslvp~~DptllFtnAGM~qFK~~fl-G~~~p~~~~~~~~r~~~~QkCiR~gGK 134 (936)
++||++|||++||+||++|||++||||||||+||++|||||||||||||||+ |.++|| ++|+|+||||||+
T Consensus 54 ~~~~~~eiR~~fl~FF~~~gH~~v~s~pvvprw~dDllft~Agm~~Fkp~f~~G~~~pp-----~~r~~~sQkCiR~--- 125 (902)
T TIGR03683 54 KKYTLDEMREAFLSFFEKHGHTRIKRYPVVARWRDDVYLTIASIADFQPWVTSGLVPPP-----ANPLVISQPCIRL--- 125 (902)
T ss_pred CCCCHHHHHHHHHHHHHhCCCEEeCCcCcCcCCCCCeeEeecchhhhhHhhcCCCCCCC-----CCCceeccccccc---
Confidence 5699999999999999999999999999999999999999999999999998 999886 4799999999999
Q ss_pred CCCCCCCCCCCCcccccccccccccc-----cccHHHHHHHHHHHchhccCCCCCceEEEEECCCCcCCCCCcHHHHHHH
Q 002324 135 HNDLDDVGKDTYHHTFFEMLGNWSFG-----DYFKNEAIEWAWELLTKVYRLPADRLYATYFGGDEKAGLAPDNEARDIW 209 (936)
Q Consensus 135 hNDld~VG~t~rHhTfFEMLGnfSFG-----dYfK~eAI~~awe~Lt~~l~l~~~rL~vTv~~~d~~~~~~~D~Ea~~iW 209 (936)
|||||||+|+||||||||||||||| ||||+|||+|||||| ++||||++|| |+
T Consensus 126 -nDldnVG~t~rH~TfFEMlGn~sFg~~~~~dYfK~EaI~~a~e~l-~~lgi~~~~i--~~------------------- 182 (902)
T TIGR03683 126 -NDIDNVGRTGRHLTCFEMMAHHAFNYPDKEIYWKDETVEYCFEFL-EELGIDPEEI--TY------------------- 182 (902)
T ss_pred -cccccccCCCCcchhhhhccceeeCCCCcccCcHHHHHHHHHHHH-HHcCCCHHHe--ee-------------------
Confidence 8999999999999999999999999 999999999999999 9999999998 32
Q ss_pred HhcCCCCCcccCCCCCCcccCCCCCCCcCceeeEeecCCCCCCCCCCCCCCCCeeEEeeecccccccCC-------CCcc
Q 002324 210 LKFLPASRVLPFGCKDNFWEMGDTGPCGPCSEIHYDRTGNRDAASLVNNDDPTCIEIWNIVFIQFNRES-------DGSL 282 (936)
Q Consensus 210 ~~~v~~~rI~~~g~~dNfW~mG~~GPCGPCsEI~yD~~~~~~~~~~~~~~~~~~lEiWNlVFmq~~r~~-------~g~l 282 (936)
+||||+|| ||||||||||| + | |||||||||||||++ ||+|
T Consensus 183 --------------~enfW~~G--GpcGPcsEi~~-~--g--------------lEiwnlVFmq~~~~~~~~~~~~~g~~ 229 (902)
T TIGR03683 183 --------------KESPWEGG--GNAGPCFEVIV-G--G--------------LELATLVFMQYEEDKEGEIEIKGGRY 229 (902)
T ss_pred --------------cCCccCCC--CCCCCceeeee-C--c--------------EeeeeeeeeeeccccccccccCCCee
Confidence 68999999 99999999999 2 1 999999999999999 9999
Q ss_pred ccCCCCccccCchHHHHHHHHhCCCCCccccccHHHHHHHHHHhCCC-----------CCCCCCCCCccccc--------
Q 002324 283 KPLPAKHVDTGLGFERLTSILQNKMSNYDTDVFMPIFDAIQQATGAR-----------PYSGKVGADDADKV-------- 343 (936)
Q Consensus 283 ~~Lp~~~IDTGmGLERl~~vlqg~~snydtDlF~pii~~i~~~~~~~-----------~y~g~~~~~~~~~~-------- 343 (936)
+|||+||||||||||||+||+||++||||| +|.|||+.|++++|++ +|+|.++.++.+.+
T Consensus 230 ~~Lp~k~VDTG~GLER~~~v~qg~~t~ydt-~f~~ii~~i~~~~g~~y~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~a 308 (902)
T TIGR03683 230 SEMPLKIVDTGYGLERFVWASQGTPTAYDA-IFPEIVDKLKENAGVELIDEEILAENARLAGMMDIEDEEDLRELRKKVA 308 (902)
T ss_pred eeCCCCceecCCCHHHHHHHHcCCCchHHH-HHHHHHHHHHHHhCCCcccchhhhhhhhhccccCccccchhhHHhhhhh
Confidence 999999999999999999999999999999 9999999999999975 46676665443211
Q ss_pred -----------c-----chhhhhhhhhhhhheeecCCCccCCCCCchHHHHHHHHHHHHHHhhhCCCccchhhHHHHHHH
Q 002324 344 -----------D-----MAYRVVADHIRTLSFAIADGSCPGNEGREYVLRRILRRAVRYGSEVLKAQDGFFNGLVNIVVK 407 (936)
Q Consensus 344 -----------d-----~a~rvIaDH~R~~~f~iaDG~~PsN~GrGYvLRrilRRa~r~~~~~lg~~~~fl~~lv~~v~~ 407 (936)
+ .++||||||+||++|||+||++|||+|||||||||||||+||+ +.||++.| |++||+.+++
T Consensus 309 ~~~~~~~~~~~~~~~~~~~~rvIaDH~R~~~f~i~DGv~PsN~grGYvlRrilRRa~r~~-~~lg~~~~-l~~lv~~~~~ 386 (902)
T TIGR03683 309 DKIGIDVEELEKIIAPVERIYAIADHTRCLAFMLGDGIVPSNVKEGYLARLVIRRTLRLM-RELGLDIP-LSDLVEMQLE 386 (902)
T ss_pred hhcccchhhhhhhccccceEEEEcchHHHHHHHHhcCCccCCCCcchHHHHHHHHHHHHH-HHhCCCcc-HHHHHHHHHH
Confidence 1 4779999999999999999999999999999999999999999 67999999 9999999999
Q ss_pred HhCCCChhhHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCChhhhhheeccCCCChhhHHHHHHHcCcee
Q 002324 408 VMGDVFPELKQREAHIREIIAAEEASFGKTLLKGIEKFKKAAQDVQGKVLSGQDAFILWDTYGFPLDLTQLMAEERGLLV 487 (936)
Q Consensus 408 ~m~~~ypel~~~~~~I~~vi~~Ee~~F~~tl~~g~~~l~~~~~~~~~~~l~g~~af~LydTyGfP~dlt~~~a~e~g~~v 487 (936)
.|++.||||.++++.|++||+.||++|.+||++|+++|++++++ ++.|||++||+||||||||+|||++||+|+|++|
T Consensus 387 ~~~~~ypel~~~~~~I~~ii~~Ee~~f~~Tl~~G~~~~~~~~~~--~~~i~g~~~f~LyDTyGfP~dl~~eia~e~g~~v 464 (902)
T TIGR03683 387 ELKKIYPELKENKDYILDILDLEEEKYRETLERGRRIVERLLKT--KKEIPLDDLIELYDSHGIPPEIVKEIAAELGAEV 464 (902)
T ss_pred HHhhhChhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--CCcCCHHHHHHHHHccCCCHHHHHHHHHHcCCcc
Confidence 99999999999999999999999999999999999999999975 3579999999999999999999999999999999
Q ss_pred Chh-hHHHHHHHHHHHhHhhhhcccCCccccchHHHHHHhhcCCCCcccccCcc--cceeeeEEEEEEEeCCeeeeeccC
Q 002324 488 DIE-GFNNAMDEARERSRSAQNKQAGGAIVMDADATAALHKRGVLATDDSFKFI--WFQDHKSVIKAIYTGSEFIESVVP 564 (936)
Q Consensus 488 d~~-~f~~~~~~~~~~sr~~~~~~~~~~~~~~~~~~~~l~~~~~~~t~~~~~Y~--y~~~~~a~Vl~i~~~~~~v~~~~~ 564 (936)
|++ +|+++|++||++||++.+. ..... ..+ .++|+|+ +.+|+ |..+++|+|++++.
T Consensus 465 d~~~~F~~~~~~~~~~~~~~~~~------~~~~~--~~~--~~~~~T~-~l~y~~~~~~e~~a~Vl~i~~---------- 523 (902)
T TIGR03683 465 EIPDNFYSIVAERHEKEEKEEEL------PKDYE--ERA--KDLPETR-RLFYEDPTMREFEAKVLGVFD---------- 523 (902)
T ss_pred cCCccHHHHHHHHHHHHHhcccc------ccchh--HHH--hcCCCce-EeccccCccceEEEEEEEEEc----------
Confidence 998 9999999999998764211 01111 111 2457785 88887 33789999999972
Q ss_pred CCeEEEEeeceeEEEccCCeeeccceeecccceEEEEEEEEeCCEEEEEEEeecCCcccCCCCEEEEEEcHhhhhhHHhh
Q 002324 565 GNEVGIVLASSSFYAEQGGQIFDEGFIEGLFGSFYVRNVQIYGGFVIHIGSLTEGAGRFSVGEEVICKVDYDRRKLIAPN 644 (936)
Q Consensus 565 ~~~~~VvLD~T~FYpEgGGQ~~D~G~I~~~~~~~~V~dv~k~~g~i~H~~~~~~~~g~l~~G~~V~~~VD~erR~~~m~~ 644 (936)
.+|+||+|+|||||||||+|+|+|..+++.++|.+|++.+|.|+|++. . +.+++|++|.++|||+||+++|++
T Consensus 524 ---~~vvLd~T~FYpEgGGQ~~D~G~I~~~~~~~~V~dv~k~~g~i~H~~~--~--~~l~~G~~V~~~VD~~rR~~~m~~ 596 (902)
T TIGR03683 524 ---NYVVLDQTAFYPEGGGQPADTGYLITNGGKIRVVDVQKVGGVIVHKVD--G--EGIKEGDEVKGEIDWERRLRLMRH 596 (902)
T ss_pred ---CEEEEeCCCCCCCCCCCCCCEEEEEeCCcEEEEEEEEEECCEEEEEeC--C--CCCCCCCEEEEEECHHHHHHHHHH
Confidence 369999999999999999999999877778999999999999999985 2 458999999999999999999999
Q ss_pred hhHHHHHHHHHHHHhCCccccccccccCCceEEEecCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEcCHHHHHhhcCcc
Q 002324 645 HTCTHMLNFALREVLGDHVDQKGSVVLPEKLRFDFSHGKPVDPEHLRRIESIVNEQIKAELDVFSKEATLAEAKCINGLR 724 (936)
Q Consensus 645 HTAtHLL~aALr~vlG~~v~q~Gs~v~~d~lrfDF~~~~~ls~eeL~~IE~~vNeiI~~nlpV~~~~~~~eEA~~~~g~~ 724 (936)
|||||||++||+++||.|++|+||+++++++||||+|++++|++++++||+.||++|++|+||++.+++++||++..+++
T Consensus 597 HTAtHLL~~alr~vlG~~v~q~Gs~v~~d~~r~Df~~~~~lt~eel~~IE~~vN~~I~~n~pV~~~~~~~~eA~~~~~~~ 676 (902)
T TIGR03683 597 HTATHVLLAAARRVLGRHVWQAGAQKDTDKARLDITHYKRISEEEIKEIERLANRIVMENRPVSVKWMDRNEAEQKYGFR 676 (902)
T ss_pred HHHHHHHHHHHHHHhCCceeecCccccCCcEEEEEeCCCCCCHHHHHHHHHHHHHHHHhCCCeEEEEeCHHHHHhcCchh
Confidence 99999999999999999999999999999999999998999999999999999999999999999999999999975543
Q ss_pred ccc-CCcCCCCEEEEEEcccccccccCCCCCcccceeeeeccCcccccccccccEEEEeEeeccCCceEEEEEeChhHHH
Q 002324 725 AVF-GEVYPDPVRVVAIGRKVEDLLADPENKEWLSISAELCGGTHLSNTREAEAFALLSEEGIAKGIRRITAVTTGLAYK 803 (936)
Q Consensus 725 alf-gE~y~d~VRVV~Ig~~~~~ll~~p~~~~~~~~svelCgGTHV~nTgeIg~fkI~s~ssi~kGvrRIeavtG~~A~~ 803 (936)
.++ +++|++.||||+|+ ++|+++||||||.|||+||.|+|++++++++|++||+|+||.+|++
T Consensus 677 l~~~~~~~~~~VRVV~Ig----------------~~d~e~CgGTHV~nTgeIG~~kI~~~~~i~~Gv~RIe~v~G~~A~~ 740 (902)
T TIGR03683 677 LYQGGVPPGREIRVVEIE----------------DWDVQACGGTHCRNTGEIGPIKILKTERIQDGVERIEFAAGEAALE 740 (902)
T ss_pred hhccCCCCCCeEEEEEEC----------------CeeeeCCCCCCccchhcCceEEEEEEEEecCCeEEEEEEEChHHHH
Confidence 333 45788999999998 5899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhcccchhhHHHHHHHHhhhccCCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002324 804 AFEAACSLEKEVDDASKIEGSLLEKTVASLKSKVDGAAIPAPKKADIRAKIALLQNQVRKAQKKVAEENLQKAVKVATET 883 (936)
Q Consensus 804 ~~~~~~~~~~~l~~ll~~~~~~~~~~v~~l~~~l~~~~ip~~~~~~l~~~l~~l~~~~~~~~k~~~~l~~~~a~~~~~~l 883 (936)
++++.++++++++.+++++ +++++++++++.+++++++|++++++.+++...++++
T Consensus 741 ~~~~~~~~l~~~a~~L~~~------------------------~~~l~~~v~~l~~e~k~l~k~l~~l~~~l~~~~~~~l 796 (902)
T TIGR03683 741 YIQELEDLLRESSDILKVP------------------------PEQLPETVKRFFEEWKEQRKEIERLKKKLAELKIYEL 796 (902)
T ss_pred HHHHHHHHHHHHHHHhCCC------------------------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999988864 4578888999999999999999999999999888888
Q ss_pred HHHhcc-CCccEEEEEccCCCCHHHHHHHHHHHHhh
Q 002324 884 AEAAAS-NGKPFCISRVEVGLDAAAVREAVLKVIEQ 918 (936)
Q Consensus 884 ~~~~~~-~~~~~~v~~~~~~~d~~~Lr~~~d~l~~k 918 (936)
++++.. ++.++++..+ +.|++.||.+++.++++
T Consensus 797 ~~~~~~i~g~~vi~~~~--~~d~~~lr~la~~l~~~ 830 (902)
T TIGR03683 797 ISEAERIGGVEVIVELV--DADMDELQEIAEKLAEK 830 (902)
T ss_pred HhhheecCCEEEEEEEe--CCCHHHHHHHHHHHhcC
Confidence 876654 6788888777 46999999999999866
No 7
>PRK13902 alaS alanyl-tRNA synthetase; Provisional
Probab=100.00 E-value=2e-198 Score=1791.84 Aligned_cols=725 Identities=27% Similarity=0.476 Sum_probs=660.1
Q ss_pred cCCChhHHHHHHHHhhhcCCCeeecCCCcccCCCCCcceecccccccccccc-CCCCCCCcccccccccccccccccCCC
Q 002324 56 VEWPATKVRDTFFKFFEDKNHVNWKSSPVVPVNDPTLLFANAGMNQYKPIFL-GTADPNTQLSKLTRACNTQKCIRAGGK 134 (936)
Q Consensus 56 ~~~~~~eiR~~Fl~fF~~~gH~~v~ssslvp~~DptllFtnAGM~qFK~~fl-G~~~p~~~~~~~~r~~~~QkCiR~gGK 134 (936)
++||++|||++||+||++|||++||||||||+||++||||||||+||||||+ |.++|| ++|+|+||||||+
T Consensus 57 ~~~~~~eiR~~Fl~FF~~~gH~~v~s~pvvprw~dDllft~Agm~~Fkp~f~~G~~~pp-----~~~~~~sQ~CiR~--- 128 (900)
T PRK13902 57 KKYTLKEMREKFLSFFEKHGHTRIERYPVVARWRDDVYLTIASIYDFQPWVTSGLVPPP-----ANPLVISQPCIRL--- 128 (900)
T ss_pred CCCCHHHHHHHHHHHHHhCCCEEcCCcCcCCCCCCCeeeeecchhhhhHHhcCCCCCCC-----CCCceecccccch---
Confidence 5599999999999999999999999999999999999999999999999998 999886 4799999999999
Q ss_pred CCCCCCCCCCCCcccccccccccccc-----cccHHHHHHHHHHHchhccCCCCCceEEEEECCCCcCCCCCcHHHHHHH
Q 002324 135 HNDLDDVGKDTYHHTFFEMLGNWSFG-----DYFKNEAIEWAWELLTKVYRLPADRLYATYFGGDEKAGLAPDNEARDIW 209 (936)
Q Consensus 135 hNDld~VG~t~rHhTfFEMLGnfSFG-----dYfK~eAI~~awe~Lt~~l~l~~~rL~vTv~~~d~~~~~~~D~Ea~~iW 209 (936)
|||||||+|+||||||||||||||| ||||+|||+|||||||++|||||+|| |+
T Consensus 129 -nDldnVG~t~rH~T~FEMlGn~sFg~~~~~~YfK~eaI~~a~e~lt~~lgi~~~~I--~~------------------- 186 (900)
T PRK13902 129 -NDIDNVGRTGRHLTSFEMMAHHAFNYPDKEVYWKDETVEYCFEFFTKELGIDPEEI--TF------------------- 186 (900)
T ss_pred -hhhhhccccCCchhhhhhccceeeCCCCcccccHHHHHHHHHHHHHhhcCCCHHHe--ee-------------------
Confidence 8999999999999999999999999 99999999999999999999999988 32
Q ss_pred HhcCCCCCcccCCCCCCcccCCCCCCCcCceeeEeecCCCCCCCCCCCCCCCCeeEEeeecccccccCCCCccccCCCCc
Q 002324 210 LKFLPASRVLPFGCKDNFWEMGDTGPCGPCSEIHYDRTGNRDAASLVNNDDPTCIEIWNIVFIQFNRESDGSLKPLPAKH 289 (936)
Q Consensus 210 ~~~v~~~rI~~~g~~dNfW~mG~~GPCGPCsEI~yD~~~~~~~~~~~~~~~~~~lEiWNlVFmq~~r~~~g~l~~Lp~~~ 289 (936)
+||||+|| ||||||||||| + | |||||||||||||+ +|+|+|||+||
T Consensus 187 --------------~enfW~~G--GpcGPcsEi~~-~--g--------------lEiwnlVFmqy~~~-~g~~~~Lp~k~ 232 (900)
T PRK13902 187 --------------KESWWEGG--GNAGPCFEVLV-R--G--------------LELATLVFMQYKKD-GNRYVEMPLKI 232 (900)
T ss_pred --------------cccccCCC--CCCCCceeeee-C--C--------------EEeeeeeeeEEEcC-CCeeeeCCCCe
Confidence 68999999 99999999999 2 1 99999999999998 89999999999
Q ss_pred cccCchHHHHHHHHhCCCCCccccccHHHHHHHHHHhCCC-----------CCCCCCCCCcccc-----c----------
Q 002324 290 VDTGLGFERLTSILQNKMSNYDTDVFMPIFDAIQQATGAR-----------PYSGKVGADDADK-----V---------- 343 (936)
Q Consensus 290 IDTGmGLERl~~vlqg~~snydtDlF~pii~~i~~~~~~~-----------~y~g~~~~~~~~~-----~---------- 343 (936)
||||||||||+||+||++||||| +|.|||+.|++++|++ +|+|.++.++.+. .
T Consensus 233 VDTG~GLER~~~v~qg~~t~ydt-~f~~ii~~i~~~~g~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~~ 311 (900)
T PRK13902 233 VDTGYGLERIAWASQGTPTAYDA-IFGELVDKLKENAGVEEPDEEILAEAARLAGLMDIEEIEDLRSLRQKVAKKLGIDV 311 (900)
T ss_pred eeCCcCHHHHHHHHcCCCchHHH-HHHHHHHHHHHHhCCCcccchhhhhhhhhcccCCcccchhHHHHHHHHHhhcccch
Confidence 99999999999999999999999 9999999999999974 2566665433221 1
Q ss_pred ---------cchhhhhhhhhhhhheeecCCCccCCCCCchHHHHHHHHHHHHHHhhhCCCccchhhHHHHHHHHhCCCCh
Q 002324 344 ---------DMAYRVVADHIRTLSFAIADGSCPGNEGREYVLRRILRRAVRYGSEVLKAQDGFFNGLVNIVVKVMGDVFP 414 (936)
Q Consensus 344 ---------d~a~rvIaDH~R~~~f~iaDG~~PsN~GrGYvLRrilRRa~r~~~~~lg~~~~fl~~lv~~v~~~m~~~yp 414 (936)
..++||||||+||++|||+||++|||+|||||||||||||+|++ +.||++.| |++||+.+++.|++.||
T Consensus 312 ~~~~~~~~~~~~~~vIaDH~R~~~f~i~DGv~PsN~grGYvlRrilRRa~r~~-~~lg~~~~-l~~lv~~~~~~~~~~yp 389 (900)
T PRK13902 312 EELEELLEPLEAIYAIADHTRTLAFMLGDGIVPSNVGEGYLARLVIRRTLRLL-DELGLDVP-LSELVDMQIDELKEDYP 389 (900)
T ss_pred hhhhhhccccceEEEEecHHHHHHHHHhCCCcCCCCCcchHHHHHHHHHHHHH-HHhCCCcc-HHHHHHHHHHHHhhhCh
Confidence 15789999999999999999999999999999999999999999 57999999 99999999999999999
Q ss_pred hhHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCChhhhhheeccCCCChhhHHHHHHHcCceeCh-hhHH
Q 002324 415 ELKQREAHIREIIAAEEASFGKTLLKGIEKFKKAAQDVQGKVLSGQDAFILWDTYGFPLDLTQLMAEERGLLVDI-EGFN 493 (936)
Q Consensus 415 el~~~~~~I~~vi~~Ee~~F~~tl~~g~~~l~~~~~~~~~~~l~g~~af~LydTyGfP~dlt~~~a~e~g~~vd~-~~f~ 493 (936)
||.++++.|++||+.||++|.+||++|.++|++++++. +.|||++||+||||||||+|||++||+|+|++||+ ++|+
T Consensus 390 el~~~~~~I~~ii~~Ee~~f~~tl~~G~~~~~~~~~~~--~~l~g~~~f~LYDt~G~P~dl~~eia~e~g~~vd~p~~F~ 467 (900)
T PRK13902 390 ELKENRDYILDIVDLEEEKYRETLERGKRIVERLAKKK--EEIPLDDLIELYDSHGIPPEIVKEIAKKKGVEVEVPDNFY 467 (900)
T ss_pred hHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--CCCCHHHHhhhhhcCCCCHHHHHHHHHHcCCccCchhhHH
Confidence 99999999999999999999999999999999999876 57999999999999999999999999999999999 8999
Q ss_pred HHHHHHHHHhHhhhhcccCCccccchHHHHHHhhcCCCCcccccCcc--cceeeeEEEEEEEeCCeeeeeccCCCeEEEE
Q 002324 494 NAMDEARERSRSAQNKQAGGAIVMDADATAALHKRGVLATDDSFKFI--WFQDHKSVIKAIYTGSEFIESVVPGNEVGIV 571 (936)
Q Consensus 494 ~~~~~~~~~sr~~~~~~~~~~~~~~~~~~~~l~~~~~~~t~~~~~Y~--y~~~~~a~Vl~i~~~~~~v~~~~~~~~~~Vv 571 (936)
++|++||++||++.+ .. .... ..+ .++|+|+ +.+|+ |..+++|+|++++. .+|+
T Consensus 468 ~~~~~~~~~~~~~~~-~~-----~~~~--~~~--~~~~~T~-~l~y~~~~~~~~~a~Vl~i~~-------------~~vv 523 (900)
T PRK13902 468 SLVAERHEKAEEEEE-EP-----VVEE--ERL--KDLPETE-KLFYEDPYMREFEAKVLGVID-------------NYVV 523 (900)
T ss_pred HHHHHHHHHHhhccc-cc-----cchh--hHh--hcCCCce-EeccccCccceEEEEEEEEEc-------------CEEE
Confidence 999999999876411 10 0100 111 2457785 88888 33789999999973 2799
Q ss_pred eeceeEEEccCCeeeccceeecccceEEEEEEEEeCCEEEEEEEeecCCcccCCCCEEEEEEcHhhhhhHHhhhhHHHHH
Q 002324 572 LASSSFYAEQGGQIFDEGFIEGLFGSFYVRNVQIYGGFVIHIGSLTEGAGRFSVGEEVICKVDYDRRKLIAPNHTCTHML 651 (936)
Q Consensus 572 LD~T~FYpEgGGQ~~D~G~I~~~~~~~~V~dv~k~~g~i~H~~~~~~~~g~l~~G~~V~~~VD~erR~~~m~~HTAtHLL 651 (936)
||+|+|||||||||+|+|+|..++..++|.+|++.+|.|+|++. . +.+.+|++|.++|||+||+++|++|||||||
T Consensus 524 LD~T~FYpEgGGQ~~D~G~I~~~~~~~~V~dv~k~~g~i~H~~~--~--~~~~~G~~V~~~VD~~rR~~~mr~HTAtHLL 599 (900)
T PRK13902 524 LDQTAFYPEGGGQPADTGVLIVDGKGYKVVDVQKVGGVIVHVLE--G--EPPKKGDEVRGEIDWERRYRLMRHHTATHII 599 (900)
T ss_pred EeCCCCCCCCCCCCCCEEEEEeCCcEEEEEEEEEECCEEEEEeC--C--CCCCCCCEEEEEECHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999877668999999999999999984 2 4556799999999999999999999999999
Q ss_pred HHHHHHHhCCccccccccccCCceEEEecCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEcCHHHHHhhcCccccc-CCc
Q 002324 652 NFALREVLGDHVDQKGSVVLPEKLRFDFSHGKPVDPEHLRRIESIVNEQIKAELDVFSKEATLAEAKCINGLRAVF-GEV 730 (936)
Q Consensus 652 ~aALr~vlG~~v~q~Gs~v~~d~lrfDF~~~~~ls~eeL~~IE~~vNeiI~~nlpV~~~~~~~eEA~~~~g~~alf-gE~ 730 (936)
++||+++||.|++|+|++++++++||||+|++++|++++++||+.||++|.+|+||.+.+++++||++..+++.++ +++
T Consensus 600 ~~al~~vlG~~v~q~Gs~v~~d~~r~Df~~~~~lt~eel~~IE~~vN~~I~~n~pV~~~~~~~~eA~~~~~~~l~~~g~~ 679 (900)
T PRK13902 600 LAAARKVLGDHVWQAGAQKTVDKARLDITHYKRITREEVKEIERLANEIVMENRPVKVEWMDRNEAEQKYGFRLYQGGVP 679 (900)
T ss_pred HHHHHHHhCCceeecCccccCCCEEEEEeCCCCCCHHHHHHHHHHHHHHHHcCCCEEEEecCHHHHHhccchhhhccCCC
Confidence 9999999999999999999999999999998999999999999999999999999999999999999986654443 568
Q ss_pred CCCCEEEEEEcccccccccCCCCCcccceeeeeccCcccccccccccEEEEeEeeccCCceEEEEEeChhHHHHHHHHHH
Q 002324 731 YPDPVRVVAIGRKVEDLLADPENKEWLSISAELCGGTHLSNTREAEAFALLSEEGIAKGIRRITAVTTGLAYKAFEAACS 810 (936)
Q Consensus 731 y~d~VRVV~Ig~~~~~ll~~p~~~~~~~~svelCgGTHV~nTgeIg~fkI~s~ssi~kGvrRIeavtG~~A~~~~~~~~~ 810 (936)
|++.||||+|+ ++|+++||||||.|||+||.|+|++++++++|++||+|+||.+|+++++..++
T Consensus 680 ~~~~VRVV~Ig----------------~~d~e~CgGTHV~nTgeIG~~kI~~~e~i~~Gv~RIe~v~G~~A~~~~~~~~~ 743 (900)
T PRK13902 680 PGKTIRVVEIG----------------DWDVEACGGTHVSNTGEIGPIKILKTERIQDGVERLEFAAGDAAVEYIQELED 743 (900)
T ss_pred CCCeEEEEEEC----------------CeeeeCCCCCCcCcHhhCeeEEEEEEEEecCCeEEEEEEEChHHHHHHHHHHH
Confidence 88999999998 68999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcccchhhHHHHHHHHhhhccCCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-
Q 002324 811 LEKEVDDASKIEGSLLEKTVASLKSKVDGAAIPAPKKADIRAKIALLQNQVRKAQKKVAEENLQKAVKVATETAEAAAS- 889 (936)
Q Consensus 811 ~~~~l~~ll~~~~~~~~~~v~~l~~~l~~~~ip~~~~~~l~~~l~~l~~~~~~~~k~~~~l~~~~a~~~~~~l~~~~~~- 889 (936)
++++++.+++++ ++++.++++++++++++++|++++++.+++...++.+..+++.
T Consensus 744 ~l~~~a~~L~~~------------------------~~el~~~v~kl~ee~k~l~kei~~l~~~l~~~~~~~l~~~~~~~ 799 (900)
T PRK13902 744 LLKEAAEILGVP------------------------PEQLPKTVERFFEEWKEQKKEIEKLRKELAELLASELLSKAEEV 799 (900)
T ss_pred HHHHHHHHhCCC------------------------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhheEe
Confidence 999999988864 5678888999999999999999999999999999988877654
Q ss_pred CCccEEEEEccCCCCHHHHHHHHHHHHhhh
Q 002324 890 NGKPFCISRVEVGLDAAAVREAVLKVIEQK 919 (936)
Q Consensus 890 ~~~~~~v~~~~~~~d~~~Lr~~~d~l~~k~ 919 (936)
+++++++..+ +.|++.||.+++.++++.
T Consensus 800 ~g~~~i~~~~--~~d~~~Lr~~a~~l~~~~ 827 (900)
T PRK13902 800 GGVKVVVEEV--DADEDELRKIANELAKEG 827 (900)
T ss_pred CCEEEEEEEe--CCCHHHHHHHHHHHHhcC
Confidence 6788888777 469999999999998775
No 8
>PRK01584 alanyl-tRNA synthetase; Provisional
Probab=100.00 E-value=5.1e-197 Score=1699.65 Aligned_cols=584 Identities=41% Similarity=0.727 Sum_probs=544.8
Q ss_pred CChhHHHHHHHHhhhcCCCeeecCCCcccCCCCCcceeccccccccccccCCCCCCCcccccccccccccccccCCCCCC
Q 002324 58 WPATKVRDTFFKFFEDKNHVNWKSSPVVPVNDPTLLFANAGMNQYKPIFLGTADPNTQLSKLTRACNTQKCIRAGGKHND 137 (936)
Q Consensus 58 ~~~~eiR~~Fl~fF~~~gH~~v~ssslvp~~DptllFtnAGM~qFK~~flG~~~p~~~~~~~~r~~~~QkCiR~gGKhND 137 (936)
||++|||++||+||++|||+++|||||||+|||||||||||||||||||+|.++|+ ++|+||||||||+ ||
T Consensus 1 ~~~~eiR~~fl~FF~~kgH~~~~s~slvp~~d~tllftnAGm~~fk~~f~G~~~p~-----~~r~~~~QkCiR~----~D 71 (594)
T PRK01584 1 MTLDELRKKYIDFFKSKGHVEIAGKSLIPENDPTVLFTTAGMHPLVPYLLGEPHPS-----GTRLVDVQKCLRT----GD 71 (594)
T ss_pred CCHHHHHHHHHHHHHhCCCEEcCCCCcCCCCCCCeeeeccchhhhhHHhcCCCCCC-----CCCcccccccccc----cc
Confidence 78999999999999999999999999999999999999999999999999999886 4899999999999 79
Q ss_pred CCCCCCCCCcccccccccccccccccHHHHHHHHHHHchhc--cCCCCCceEEEEECCCCcCCCCCcHHHHHHHHhc-CC
Q 002324 138 LDDVGKDTYHHTFFEMLGNWSFGDYFKNEAIEWAWELLTKV--YRLPADRLYATYFGGDEKAGLAPDNEARDIWLKF-LP 214 (936)
Q Consensus 138 ld~VG~t~rHhTfFEMLGnfSFGdYfK~eAI~~awe~Lt~~--l~l~~~rL~vTv~~~d~~~~~~~D~Ea~~iW~~~-v~ 214 (936)
||||| |+|||||||||||||||||||+|||.|||||||++ |||||||||||||+||+. +|+|+||++||+++ ||
T Consensus 72 le~VG-~~rHhTfFEMlGnfSfgdYfK~eai~~awe~lt~~~~l~l~~~rl~vTv~~~~~~--~~~D~Ea~~iW~~~g~~ 148 (594)
T PRK01584 72 IDEVG-DLSHLTFFEMLGNWSLGAYFKEESIKYSFEFLTSPDYLNIPKDKLYVTVFEGDEE--IPRDEETASVWESLGIP 148 (594)
T ss_pred ccccC-CCcchhHHHhhccccHhhhhHHHHHHHHHHHhccchhcCCCHHHeEEEEeCCCCC--CCCCHHHHHHHHHcCCC
Confidence 99999 89999999999999999999999999999999998 999999999999999885 89999999999999 99
Q ss_pred CCCcccCCCCCCcc-cCCCCCCCcCceeeEeecCCCCCC-CCCCCCCCCCeeEEeeecccccccCCCCccccCCCCcccc
Q 002324 215 ASRVLPFGCKDNFW-EMGDTGPCGPCSEIHYDRTGNRDA-ASLVNNDDPTCIEIWNIVFIQFNRESDGSLKPLPAKHVDT 292 (936)
Q Consensus 215 ~~rI~~~g~~dNfW-~mG~~GPCGPCsEI~yD~~~~~~~-~~~~~~~~~~~lEiWNlVFmq~~r~~~g~l~~Lp~~~IDT 292 (936)
++||+++|.+|||| +||++||||||||||||+|+.... .+.++++|+|||||||||||||||++||+|+|||+|||||
T Consensus 149 ~~rI~~~~~~dNfW~~~G~~GPCGPcsEI~~d~g~~~~~~~~~~~~~~~r~lEiwNlVFmq~~~~~~g~~~~Lp~k~IDT 228 (594)
T PRK01584 149 KDRIFYLSREHNWWGPVGETGPCGPDTEIFVDTGKPKCSVNCRPTCSCGKYFEIWNNVFMQYNKDEDGNYEELKRKCVDT 228 (594)
T ss_pred HHHeeeCCCCCCcccccCCCcCCCCceEEEEecCCcccccccCCCCCCCceEEEeeeeeeeeeecCCCccccCCCCceeC
Confidence 99999999999999 899999999999999999754111 1234568899999999999999999999999999999999
Q ss_pred CchHHHHHHHHhCCCCCccccccHHHHHHHHHHhCCCCCCCCCCCCccccccchhhhhhhhhhhhheeecC--CCccCCC
Q 002324 293 GLGFERLTSILQNKMSNYDTDVFMPIFDAIQQATGARPYSGKVGADDADKVDMAYRVVADHIRTLSFAIAD--GSCPGNE 370 (936)
Q Consensus 293 GmGLERl~~vlqg~~snydtDlF~pii~~i~~~~~~~~y~g~~~~~~~~~~d~a~rvIaDH~R~~~f~iaD--G~~PsN~ 370 (936)
|||||||+|||||++||||||+|.|||++|++++|+ +|. .. +..++||||||||+||++||||| |++|||+
T Consensus 229 GmGLERl~~vlqg~~s~ydtdlf~pii~~i~~~~~~-~y~----~~--~~~~~a~rvIaDH~R~~~f~i~D~~Gv~PsN~ 301 (594)
T PRK01584 229 GMGIERTIAFLQGKSSVYDTEAFTPIIKRIEKISGK-IYG----QN--EEDDRSIRIIADHIRAACFILGDPFVVLPSNV 301 (594)
T ss_pred CcCHHHHHHHHcCCCCccchhhhHHHHHHHHHHhCC-CcC----CC--CCCceeEEEEecHHHHHHHHhhcccCCCCCCC
Confidence 999999999999999999999999999999999997 473 11 23468999999999999999999 9999999
Q ss_pred CCchHHHHHHHHHHHHHHhhhCCCccchhhHHHHHHHHhCCCChhhHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002324 371 GREYVLRRILRRAVRYGSEVLKAQDGFFNGLVNIVVKVMGDVFPELKQREAHIREIIAAEEASFGKTLLKGIEKFKKAAQ 450 (936)
Q Consensus 371 GrGYvLRrilRRa~r~~~~~lg~~~~fl~~lv~~v~~~m~~~ypel~~~~~~I~~vi~~Ee~~F~~tl~~g~~~l~~~~~ 450 (936)
|||||||||||||+||| +.||++.+||++||+.|++.|+++||||.++++.|++||+.||++|.+||++|+++|++.++
T Consensus 302 grGYvlRrilRRa~r~~-~~lg~~~~fl~~lv~~v~~~~~~~ypel~~~~~~I~~ii~~EE~~F~~tl~~G~~~l~~~i~ 380 (594)
T PRK01584 302 GQGYVLRRLIRRSIRHA-KKLGIESHFLADLVDSVEEIYGSFYPELTEKKDFIKEELNKEEEKFFKTLRKGEQEFIKLIP 380 (594)
T ss_pred CCchHHHHHHHHHHHHH-HHhCCCchhHHHHHHHHHHHHhhhChHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999 57999999999999999999999999999999999999999999999999999999999998
Q ss_pred hhc-CCCCChhhhhheeccCCCChhhHHHHHHHcCceeChhhHHHHHHHHHHHhHhhhhcccCCccccchHHHHHHhhcC
Q 002324 451 DVQ-GKVLSGQDAFILWDTYGFPLDLTQLMAEERGLLVDIEGFNNAMDEARERSRSAQNKQAGGAIVMDADATAALHKRG 529 (936)
Q Consensus 451 ~~~-~~~l~g~~af~LydTyGfP~dlt~~~a~e~g~~vd~~~f~~~~~~~~~~sr~~~~~~~~~~~~~~~~~~~~l~~~~ 529 (936)
+++ ++.|||++||+||||||||+|||++||+|+|++||+++|+++|++||++||++ .
T Consensus 381 ~~~~~~~~~g~~af~LydTyGfP~dlt~~~a~e~g~~vd~~~f~~~~~~~~~~~~~~---~------------------- 438 (594)
T PRK01584 381 NLGSSKIIPGDIAFKLYDTYGFPYEITEELASEYGFTVDREGFDEHFKKHQKVSKKG---A------------------- 438 (594)
T ss_pred HhccCCccCHHHHHhhhccCCCCHHHHHHHHHHcCCeecHHHHHHHHHHHHHHHhhc---c-------------------
Confidence 864 46899999999999999999999999999999999999999999999888641 0
Q ss_pred CCCcccccCcccceeeeEEEEEEEeCCeeeeeccCCCeEEEEeeceeEEEccCCeeeccceeecccceEEEEEEEEeCCE
Q 002324 530 VLATDDSFKFIWFQDHKSVIKAIYTGSEFIESVVPGNEVGIVLASSSFYAEQGGQIFDEGFIEGLFGSFYVRNVQIYGGF 609 (936)
Q Consensus 530 ~~~t~~~~~Y~y~~~~~a~Vl~i~~~~~~v~~~~~~~~~~VvLD~T~FYpEgGGQ~~D~G~I~~~~~~~~V~dv~k~~g~ 609 (936)
. . +|. ||++|+|.
T Consensus 439 -~-~-~f~---------------------------------------------g~~~d~g~------------------- 451 (594)
T PRK01584 439 -D-K-VFK---------------------------------------------GGLADHSY------------------- 451 (594)
T ss_pred -c-c-ccc---------------------------------------------CCcCcccc-------------------
Confidence 0 0 011 24555543
Q ss_pred EEEEEEeecCCcccCCCCEEEEEEcHhhhhhHHhhhhHHHHHHHHHHHHhCCccccccccccCCceEEEecCCCCCCHHH
Q 002324 610 VIHIGSLTEGAGRFSVGEEVICKVDYDRRKLIAPNHTCTHMLNFALREVLGDHVDQKGSVVLPEKLRFDFSHGKPVDPEH 689 (936)
Q Consensus 610 i~H~~~~~~~~g~l~~G~~V~~~VD~erR~~~m~~HTAtHLL~aALr~vlG~~v~q~Gs~v~~d~lrfDF~~~~~ls~ee 689 (936)
.+|++|||+|||++||+++||.++.|+||+++++++||||++++++|+++
T Consensus 452 ------------------------------~~~r~HTAtHLL~~ALr~vlG~~v~q~Gs~v~~d~~r~DF~~~~~it~ed 501 (594)
T PRK01584 452 ------------------------------ETTKLHTATHLLHKALRLVLGDHVRQKGSNITAERLRFDFSHPEKMTDDE 501 (594)
T ss_pred ------------------------------cHHHHHHHHHHHHHHHHHHcCccceeecCCcCCCcEEEEEeCCCCCCHHH
Confidence 36999999999999999999999999999999999999999988999999
Q ss_pred HHHHHHHHHHHHHhcCCEEEEEcCHHHHHhhcCcccccCCcCCCCEEEEEEcccccccccCCCCCcccceeeeeccCccc
Q 002324 690 LRRIESIVNEQIKAELDVFSKEATLAEAKCINGLRAVFGEVYPDPVRVVAIGRKVEDLLADPENKEWLSISAELCGGTHL 769 (936)
Q Consensus 690 L~~IE~~vNeiI~~nlpV~~~~~~~eEA~~~~g~~alfgE~y~d~VRVV~Ig~~~~~ll~~p~~~~~~~~svelCgGTHV 769 (936)
+++||+.||++|++|+||++.+++++||++. +.+++|+++|++.||||+|+ ++|+++||||||
T Consensus 502 L~~IE~~vNeiI~~n~pV~~~~~s~eEA~~~-~~~~lf~e~y~~~VRVV~Ig----------------d~d~elCGGTHV 564 (594)
T PRK01584 502 IKKVEDIVNLQIKNDLSVKKEVMSLEEAREK-GAMALFGEKYEDIVKVYEID----------------GFSKEVCGGPHV 564 (594)
T ss_pred HHHHHHHHHHHHHhCCCeEEEEcCHHHHHhc-chhhhccccCCCcEEEEEEC----------------CeeeeCCCCCCC
Confidence 9999999999999999999999999999996 77889999999999999998 589999999999
Q ss_pred ccccccccEEEEeEeeccCCceEEEEEe
Q 002324 770 SNTREAEAFALLSEEGIAKGIRRITAVT 797 (936)
Q Consensus 770 ~nTgeIg~fkI~s~ssi~kGvrRIeavt 797 (936)
.|||+||.|+|++++++++|+|||+|++
T Consensus 565 ~nTgeIG~fkI~s~~s~g~GvrRI~av~ 592 (594)
T PRK01584 565 ENTGELGTFKIQKEQSSSSGVRRIRAIL 592 (594)
T ss_pred CCcccCceEEEEecccccCCeEEEEEEe
Confidence 9999999999999999999999999986
No 9
>PF01411 tRNA-synt_2c: tRNA synthetases class II (A); InterPro: IPR018164 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. Alanyl-tRNA synthetase (6.1.1.7 from EC) is an alpha4 tetramer that belongs to class IIc. ; GO: 0000166 nucleotide binding, 0004813 alanine-tRNA ligase activity, 0005524 ATP binding, 0006419 alanyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3HY1_A 3HXZ_C 3HXY_A 3HXU_A 3HY0_B 3HXV_A 3HXX_A 3HXW_A 2E1B_A 2ZZG_B ....
Probab=100.00 E-value=4.2e-179 Score=1560.98 Aligned_cols=545 Identities=54% Similarity=0.928 Sum_probs=453.9
Q ss_pred HHHHHHHHhhhcCCCeeecCCCcccCCCCCcceeccccccccccccCCC-CCCCcccccccccccccccccCCCCCCCCC
Q 002324 62 KVRDTFFKFFEDKNHVNWKSSPVVPVNDPTLLFANAGMNQYKPIFLGTA-DPNTQLSKLTRACNTQKCIRAGGKHNDLDD 140 (936)
Q Consensus 62 eiR~~Fl~fF~~~gH~~v~ssslvp~~DptllFtnAGM~qFK~~flG~~-~p~~~~~~~~r~~~~QkCiR~gGKhNDld~ 140 (936)
|||++||+||++|||++||||||||+||||||||||||+||||||+|.+ +|| ++|+|+||||||+|||||||||
T Consensus 1 eiR~~fl~fF~~~gH~~v~s~~lvp~~d~~llf~~Agm~~fkp~f~g~~~~p~-----~~r~~~~Q~CiR~~GkhnDld~ 75 (552)
T PF01411_consen 1 EIREKFLDFFEKKGHTIVPSSSLVPRWDPTLLFTNAGMNQFKPYFLGGEVPPP-----ANRLVSSQKCIRTGGKHNDLDN 75 (552)
T ss_dssp HHHHHHHHHHHTTT-EEE----SS-TT-TTBSS--SGGGGGCCCCTTSSS--S-----SSCEEEEEEEE-EETTEECGGG
T ss_pred CHHHHHHHHHHHCCCEEeccCCcccCCCCCceeeHhhHHHHHHHhcCCCCCCC-----CCcccccceeeccCCCcchhhh
Confidence 7999999999999999999999999999999999999999999999999 554 5899999999999999999999
Q ss_pred CCCCCCcccccccccccccccccHHHHHHHHHHHchhccCCCCCceEEEEECCCCcCCCCCcHHHHHHHHhc--CCCCCc
Q 002324 141 VGKDTYHHTFFEMLGNWSFGDYFKNEAIEWAWELLTKVYRLPADRLYATYFGGDEKAGLAPDNEARDIWLKF--LPASRV 218 (936)
Q Consensus 141 VG~t~rHhTfFEMLGnfSFGdYfK~eAI~~awe~Lt~~l~l~~~rL~vTv~~~d~~~~~~~D~Ea~~iW~~~--v~~~rI 218 (936)
||+|+|||||||||||||||||||+|||+|||||||++|||||+|||||||.+ |+||++||+++ +|++||
T Consensus 76 VG~t~rH~T~FEMlGn~sfgdYfK~eai~~awe~lt~~l~i~~~~l~vt~~~~--------d~ea~~~w~~~~g~~~~~i 147 (552)
T PF01411_consen 76 VGRTGRHHTFFEMLGNFSFGDYFKEEAIEYAWEFLTEVLGIPPDRLYVTVFEW--------DGEAGEIWEKIVGGPEERI 147 (552)
T ss_dssp TTTSSS--SEEEEEEEEEECSS-HHHHHHHHHHHHHCTTT--GGGEEEEEECC--------ECCCCCCCCECCTTECCCE
T ss_pred cCCCceEeeehhhccccccccccHHHHHHHHHHHHHhhcCCChHhEEEEEeCC--------chhHHHHHHHhcCCCHHHe
Confidence 99999999999999999999999999999999999999999999999999986 56999999999 999999
Q ss_pred ccCCCCCCcccCCCCCCCcCceeeEeecCCCCCC---CCCCCCCCCCeeEEeeecccccccCCCCccccCCCCccccCch
Q 002324 219 LPFGCKDNFWEMGDTGPCGPCSEIHYDRTGNRDA---ASLVNNDDPTCIEIWNIVFIQFNRESDGSLKPLPAKHVDTGLG 295 (936)
Q Consensus 219 ~~~g~~dNfW~mG~~GPCGPCsEI~yD~~~~~~~---~~~~~~~~~~~lEiWNlVFmq~~r~~~g~l~~Lp~~~IDTGmG 295 (936)
+++|.+||||+||++||||||||||||+|..+.+ .+.++++|+||+||||+|||||+|++||+++|||+++||||||
T Consensus 148 ~~~~~~~nfw~~g~~gpcgpcseI~~d~G~e~~~~~~~~~~~~~~~~~~eiwn~vf~q~~~~~~g~~~~L~~~~idtGmg 227 (552)
T PF01411_consen 148 LVFGKKDNFWEMGDTGPCGPCSEIFYDRGEERGCWDSQGTPTCDDDRFLEIWNLVFMQYNRDEDGSLEPLPKKNIDTGMG 227 (552)
T ss_dssp EEE-CCEEEEESSTSEEEEEEEEEEEEEECCCHHHHHHSTSSHHHHHECCCCCCCCCEEEETTTSHCCCCCCCCCCCCEE
T ss_pred EecCCCCceEECCCCCCCCCCEEEEECCCcccCccccccccccccccHHHHHHHHHHHhccccccccccccchhhhcCCC
Confidence 9999999999999999999999999999765543 4567789999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCCCCccccccHHHHHHHHHHhCCCCCCCCCCCCccccccchhhhhhhhhhhhheeecCCCccCCCCCchH
Q 002324 296 FERLTSILQNKMSNYDTDVFMPIFDAIQQATGARPYSGKVGADDADKVDMAYRVVADHIRTLSFAIADGSCPGNEGREYV 375 (936)
Q Consensus 296 LERl~~vlqg~~snydtDlF~pii~~i~~~~~~~~y~g~~~~~~~~~~d~a~rvIaDH~R~~~f~iaDG~~PsN~GrGYv 375 (936)
|||++++|||++||||||+|+||++.|+++++. +|. +....++|+||||||+||++|||+||++|||+|||||
T Consensus 228 ler~~~~lq~~~s~~~tdlf~~i~~~i~~~~~~-~y~------~~~~~~~a~rvIaDH~Ra~~f~i~DGv~PsN~GrGYv 300 (552)
T PF01411_consen 228 LERLAAVLQGVRSNYDTDLFMPIIEAIEELSGV-PYK------DEEEIDVALRVIADHIRALTFAIADGVLPSNEGRGYV 300 (552)
T ss_dssp HHHHCHHHCCHCCHHHCHHTCHHHHHHHHHHC---TT------SSCCCHHHHHHHHHHHHHHHHHHHTT--SSSSHHHHH
T ss_pred cHHHHHHHhhhhhhhchhhhhhHHHHHHHHcCC-Ccc------cccccccEEEEEcchhhceeeEecCCeeecccCCcch
Confidence 999999999999999999999999999999998 572 2245679999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhhCCCccchhhHHHHHHHHhCCCChhhHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-C
Q 002324 376 LRRILRRAVRYGSEVLKAQDGFFNGLVNIVVKVMGDVFPELKQREAHIREIIAAEEASFGKTLLKGIEKFKKAAQDVQ-G 454 (936)
Q Consensus 376 LRrilRRa~r~~~~~lg~~~~fl~~lv~~v~~~m~~~ypel~~~~~~I~~vi~~Ee~~F~~tl~~g~~~l~~~~~~~~-~ 454 (936)
||||||||+|++ ++||++.+||++||+.|++.|++.||||.++++.|++||+.||++|.+||++|+++|++++++++ +
T Consensus 301 lRriiRRa~r~~-~~lg~~~~fl~~lv~~vi~~~~~~ypel~~~~~~I~~ii~~EE~~F~~TL~~G~~~l~~~i~~~~~~ 379 (552)
T PF01411_consen 301 LRRIIRRAVRFG-RKLGIEEPFLYELVPVVIESMGDFYPELKENKDYIKDIIKEEEERFLKTLERGLKLLEKLIKKLKKK 379 (552)
T ss_dssp HHHHHHHHHHHH-HHTT-SS--HHHHHHHHHHHHTTTGTHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHH-HHhCCCccchHHHHHHHHHHhhccChhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccc
Confidence 999999999999 68999999999999999999999999999999999999999999999999999999999999976 5
Q ss_pred CCCChhhhhheeccCCCChhhHHHHHHHcCceeChhhHHHHHHHHHHHhHhhhhcccCCccccchHHHHHHhhcCCCCcc
Q 002324 455 KVLSGQDAFILWDTYGFPLDLTQLMAEERGLLVDIEGFNNAMDEARERSRSAQNKQAGGAIVMDADATAALHKRGVLATD 534 (936)
Q Consensus 455 ~~l~g~~af~LydTyGfP~dlt~~~a~e~g~~vd~~~f~~~~~~~~~~sr~~~~~~~~~~~~~~~~~~~~l~~~~~~~t~ 534 (936)
++|||++||+||||||||+|||++||+|+|++||+++|+++|++||++||++++.... +..+... +. .++.++
T Consensus 380 ~~lsge~aF~LYDTyGfP~Dlt~eia~e~gl~vD~~~f~~~m~~qr~~sr~~~~~~~~--~~~~~~~---~~--~l~~~t 452 (552)
T PF01411_consen 380 KELSGEDAFKLYDTYGFPLDLTEEIAEEKGLSVDEEGFEYAMEEQRERSRAAKKKKSS--IEEDVSA---LA--ELPKTT 452 (552)
T ss_dssp SEE-HHHHHHHHHHH---HHHHHHHHHTTT-EE-HHCCHHHHHHHCHHHCCHH----------SSST---TT--TCHHHE
T ss_pred cCCChHHheeehhccCCCHHHHHHHHHHhceeecHHHHHHHHHHHHHHhhhccccccc--hhhhHHH---Hh--hhhccc
Confidence 7999999999999999999999999999999999999999999999999876543220 0111111 11 233445
Q ss_pred cccCcccceeeeEEEEEEEeCCeeeeeccCCCeEEEEeeceeEEEccCCeeeccceeecccceEEEEEEEEeCCEEEEEE
Q 002324 535 DSFKFIWFQDHKSVIKAIYTGSEFIESVVPGNEVGIVLASSSFYAEQGGQIFDEGFIEGLFGSFYVRNVQIYGGFVIHIG 614 (936)
Q Consensus 535 ~~~~Y~y~~~~~a~Vl~i~~~~~~v~~~~~~~~~~VvLD~T~FYpEgGGQ~~D~G~I~~~~~~~~V~dv~k~~g~i~H~~ 614 (936)
+|+||+ .++++|+|++|+.+++++.++..++...||||+|+||||||||++|+|+|..++..+.|.+|++.+|+|+|++
T Consensus 453 eF~gYe-~~~~~akVlal~~~~~~~~~v~~~~~~~VVLD~T~FYpegGGQ~~D~G~I~~~~~~~~V~dv~k~~g~i~H~~ 531 (552)
T PF01411_consen 453 EFVGYE-YLECEAKVLALFKDGEFVAKVEEGEEGYVVLDKTPFYPEGGGQPGDTGTIIGDGGEFEVTDVQKVGGVILHIG 531 (552)
T ss_dssp ETCCCC-------TT---TT--EEEEEEEEEETTEEEESEE-S--SBTTB----EEECCTTEEEEEEEEEEETTEEEEEE
T ss_pred ccceee-cccccceEEEEEeCCEEEeeecCCceEEEEECCccccCCCCCCCCCeEEEeecceEEEEEEEEEECCEEEEEE
Confidence 699999 6789999999999888888888888889999999999999999999999998888999999999999999999
Q ss_pred EeecCCcccCCCCEEEEEEcHhh
Q 002324 615 SLTEGAGRFSVGEEVICKVDYDR 637 (936)
Q Consensus 615 ~~~~~~g~l~~G~~V~~~VD~er 637 (936)
.... +.+++|+.|.++|||+|
T Consensus 532 ~~~~--g~l~~G~~V~~~VD~eR 552 (552)
T PF01411_consen 532 EVES--GSLKVGDEVTAEVDWER 552 (552)
T ss_dssp SSG---GG--TTSEEEEEE-HHH
T ss_pred eccC--CCCCCCCEEEEEecCCC
Confidence 8765 88999999999999997
No 10
>cd00673 AlaRS_core Alanyl-tRNA synthetase (AlaRS) class II core catalytic domain. AlaRS is a homodimer. It is responsible for the attachment of alanine to the 3' OH group of ribose of the appropriate tRNA. This domain is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Class II assignment is based upon its predicted structure and the presence of three characteristic sequence motifs.
Probab=100.00 E-value=1.9e-110 Score=867.75 Aligned_cols=230 Identities=63% Similarity=1.115 Sum_probs=222.3
Q ss_pred hhHHHHHHHHhhhcCCCeeecCCCcccCCCCCcceeccccccccccccCCCCCCCcccccccccccccccccCCCCCCCC
Q 002324 60 ATKVRDTFFKFFEDKNHVNWKSSPVVPVNDPTLLFANAGMNQYKPIFLGTADPNTQLSKLTRACNTQKCIRAGGKHNDLD 139 (936)
Q Consensus 60 ~~eiR~~Fl~fF~~~gH~~v~ssslvp~~DptllFtnAGM~qFK~~flG~~~p~~~~~~~~r~~~~QkCiR~gGKhNDld 139 (936)
++|||++||+||++|||+++|||||||++||||||||||||||||||+|+++|+ ++|+|++|||||+ ||||
T Consensus 1 ~~eiR~~fl~FF~~kgH~~v~s~slvp~dDptllFtnAGM~~Fkp~f~G~~~p~-----~~r~~~~QkCiR~----~Die 71 (232)
T cd00673 1 ASEIRETFLSFFEKKGHTRVPSSPVVPRDDPTLLFTNAGMNQFKPIFLGEVPPP-----ANRLVNSQKCIRA----GDID 71 (232)
T ss_pred ChHHHHHHHHHHHhCCCEEeCCCCcCCCCCCchheeccchhhhhHHhcCCCCCC-----CCceeeeeeceec----CChh
Confidence 479999999999999999999999999999999999999999999999999886 5899999999999 6999
Q ss_pred CCCCCCCcccccccccccccccccHHHHHHHHHHHchhccCCCCCceEEEEECCCCcCCCCCcHHHHHHHHhc--CCCCC
Q 002324 140 DVGKDTYHHTFFEMLGNWSFGDYFKNEAIEWAWELLTKVYRLPADRLYATYFGGDEKAGLAPDNEARDIWLKF--LPASR 217 (936)
Q Consensus 140 ~VG~t~rHhTfFEMLGnfSFGdYfK~eAI~~awe~Lt~~l~l~~~rL~vTv~~~d~~~~~~~D~Ea~~iW~~~--v~~~r 217 (936)
|||+|+|||||||||||||||||||+|||+|||||||++|||||+|||||||+| |+||++||.+. ||++|
T Consensus 72 nVG~t~rHhTfFEMLGNfSFgdYFK~eaI~~awe~LT~~l~l~~~rl~vTv~~~--------dde~~~~w~~~~g~~~~~ 143 (232)
T cd00673 72 NVGKTGRHHTFFEMLGNFSFGDYFKEEAIAFAWELLTEVLGLPKDRLYVSVFEG--------DDEEEAIWWWKIGLPGIR 143 (232)
T ss_pred hccccccchhhhhhhcccchhhhhHHHHHHHHHHHHHhhcCCCccceEEEEeCC--------CHHHHHHHHHhhCCCHHH
Confidence 999999999999999999999999999999999999999999999999999974 89999999988 99999
Q ss_pred cccCCCCCCcccCCCCCCCcCceeeEeecCCCCCCCCCCCCCCCCeeEEeeecccccccCCCCccccCCCCccccCchHH
Q 002324 218 VLPFGCKDNFWEMGDTGPCGPCSEIHYDRTGNRDAASLVNNDDPTCIEIWNIVFIQFNRESDGSLKPLPAKHVDTGLGFE 297 (936)
Q Consensus 218 I~~~g~~dNfW~mG~~GPCGPCsEI~yD~~~~~~~~~~~~~~~~~~lEiWNlVFmq~~r~~~g~l~~Lp~~~IDTGmGLE 297 (936)
|++++.+||||+||++||||||||||||+++++++..++++||+|||||||||||||+|+++|+|.|||+||||||||||
T Consensus 144 i~~~~~~dNfW~~G~~GPCGPcsEI~yd~g~~~~~~~~~~~~~~r~lEIWNlVFmqy~r~~~g~l~pLp~k~IDTGmGlE 223 (232)
T cd00673 144 IERIGFKDNFWEMGGNGPCGPCSEIFYDRGEERDAASLPNEDDDRYLEIWNLVFMQYNRDADGTYRPLPKKIVDTGMGLE 223 (232)
T ss_pred eeeCCccCCCCCCCCCcCCCCCEEEEEccCCCcCccccccCCCCCEEEEeeeeeeeeeccCCCCCccCCCCeeeCCcCHH
Confidence 99999999999999999999999999999887776668889999999999999999999999999999999999999999
Q ss_pred HHHHHHhCC
Q 002324 298 RLTSILQNK 306 (936)
Q Consensus 298 Rl~~vlqg~ 306 (936)
||||||||+
T Consensus 224 Rla~vlQg~ 232 (232)
T cd00673 224 RLVWVLQGV 232 (232)
T ss_pred HHHHHHcCC
Confidence 999999996
No 11
>PLN02961 alanine-tRNA ligase
Probab=100.00 E-value=2.7e-44 Score=379.95 Aligned_cols=209 Identities=27% Similarity=0.390 Sum_probs=177.3
Q ss_pred eEEEEeeceeEEEccCCeeeccceeeccc--ceEEEEEEEEeCCEEEEEEEeec----CCcccCCCCEEEEEEcHhhhhh
Q 002324 567 EVGIVLASSSFYAEQGGQIFDEGFIEGLF--GSFYVRNVQIYGGFVIHIGSLTE----GAGRFSVGEEVICKVDYDRRKL 640 (936)
Q Consensus 567 ~~~VvLD~T~FYpEgGGQ~~D~G~I~~~~--~~~~V~dv~k~~g~i~H~~~~~~----~~g~l~~G~~V~~~VD~erR~~ 640 (936)
.+.|+||+|+|||||||||+|+|+|...+ ..+.|.+|++.+|+|+|++.+.. +.++|++|++|.++|||+||+.
T Consensus 2 ~~~viLd~T~FYpegGGQp~D~G~i~~~~~~~~~~V~~v~~~~g~i~H~~~~~~~~~~~~~~l~~G~~V~~~ID~~rR~~ 81 (223)
T PLN02961 2 RIALVLDRTIFHPQGGGQPSDTGRIVISGGDTKFSVQDVRRKDGVVYHYGVFEGSNPESASPFEAGDEVTVTVDESRRKL 81 (223)
T ss_pred CeEEEeCCceEcCCCCCCCCcEEEEEecCCCcEEEEEEEEEECCEEEEEEEecCcccccCCCCCCCCEEEEEECHHHHhh
Confidence 46799999999999999999999997532 36999999999999999986531 1247899999999999999999
Q ss_pred HHhhhhHHHHHHHHHHHH-hCCccccccccccCCceEEEecCCCCCCHHH----HHHHHHHHHHHHHhcCCEEEEEcCHH
Q 002324 641 IAPNHTCTHMLNFALREV-LGDHVDQKGSVVLPEKLRFDFSHGKPVDPEH----LRRIESIVNEQIKAELDVFSKEATLA 715 (936)
Q Consensus 641 ~m~~HTAtHLL~aALr~v-lG~~v~q~Gs~v~~d~lrfDF~~~~~ls~ee----L~~IE~~vNeiI~~nlpV~~~~~~~e 715 (936)
+|++|||+|||++||+++ +|.++.++|+++ +++.++||. ..++.++ +.+||+++|++|++++||++.+++++
T Consensus 82 ~m~~HTa~HLL~~al~~~~~~~~~~~~g~~~-~~~~~v~~~--~~i~~~~~~~~~~~iE~~~N~~I~~~~~V~~~~~~~~ 158 (223)
T PLN02961 82 HSRLHSAGHLLDVCMARVGLGPLEPGKGYHF-PDGPFVEYK--GKIPQGELDSKQDELEAEANELIAEGGKVSAAVLPYD 158 (223)
T ss_pred hhccCcHHHHHHHHHHHcCCCcccccccccc-CCccceeec--ccCCHHHHHhHHHHHHHHHHHHHHcCCceeEEEeCHH
Confidence 999999999999999998 787777888776 467888875 4566655 47999999999999999999999999
Q ss_pred HHHhhcCcccccCCc-CCCCEEEEEEcccccccccCCCCCcccceeeeeccCcccccccccccEEEEeEeeccCCceEEE
Q 002324 716 EAKCINGLRAVFGEV-YPDPVRVVAIGRKVEDLLADPENKEWLSISAELCGGTHLSNTREAEAFALLSEEGIAKGIRRIT 794 (936)
Q Consensus 716 EA~~~~g~~alfgE~-y~d~VRVV~Ig~~~~~ll~~p~~~~~~~~svelCgGTHV~nTgeIg~fkI~s~ssi~kGvrRIe 794 (936)
||+++.+ ++++... .++.||||+|+ +++.++||||||.||++||.|+|++.+ +++|.+||+
T Consensus 159 ea~~~~~-~~~~~~~~~~~~vRiV~I~----------------~~d~~~CgGTHv~nT~eig~i~I~~~~-~~kg~~Rv~ 220 (223)
T PLN02961 159 EAAELCG-GSLPDYIAKDSTPRIVKIG----------------DSPGCPCGGTHVADVSEITSVKVTQIR-VKKGVTRVS 220 (223)
T ss_pred HHHHhcC-CcCCCcCCCCCceEEEEEC----------------CCccCccCCcccCchhccccEEEEEEE-ecCCEEEEE
Confidence 9998744 2333211 14689999998 578999999999999999999999986 568999998
Q ss_pred EE
Q 002324 795 AV 796 (936)
Q Consensus 795 av 796 (936)
+-
T Consensus 221 ~~ 222 (223)
T PLN02961 221 YT 222 (223)
T ss_pred Ee
Confidence 74
No 12
>COG2872 Predicted metal-dependent hydrolases related to alanyl-tRNA synthetase HxxxH domain [General function prediction only]
Probab=100.00 E-value=4.8e-44 Score=377.66 Aligned_cols=226 Identities=29% Similarity=0.430 Sum_probs=205.7
Q ss_pred cceeeeEEEEEEEeCCeeeeeccCCCeEEEEeeceeEEEccCCeeeccceeecccceEEEEEEEEeCCEEEEEEEeecCC
Q 002324 541 WFQDHKSVIKAIYTGSEFIESVVPGNEVGIVLASSSFYAEQGGQIFDEGFIEGLFGSFYVRNVQIYGGFVIHIGSLTEGA 620 (936)
Q Consensus 541 y~~~~~a~Vl~i~~~~~~v~~~~~~~~~~VvLD~T~FYpEgGGQ~~D~G~I~~~~~~~~V~dv~k~~g~i~H~~~~~~~~ 620 (936)
|..+++|+|+.+..+ .|+||+|+|||+|||||+|+|+|...++...|+++.+.+..|+|++...
T Consensus 11 y~~e~~~~v~~v~~~-------------~i~ld~T~Fyp~~GGQp~D~G~l~~~~~~~~~~~~~~~~~~I~H~~~~~--- 74 (241)
T COG2872 11 YLKEFEATVVDVEDN-------------EIVLDRTIFYPTGGGQPGDTGTLIWAGGEYVVEDVTKDGEEIVHVLAEH--- 74 (241)
T ss_pred ccccceEEEEEEeCC-------------eEEEEeccccCCCCCCcCCceEEEeCCceEEEEEEEecceEEEEEecCc---
Confidence 567899999988642 6999999999999999999999999999999999999999999998632
Q ss_pred cccCCCCEEEEEEcHhhhhhHHhhhhHHHHHHHHHHHHhCCccccccccccCCceEEEecCCCCCCHHHHHHHHHHHHHH
Q 002324 621 GRFSVGEEVICKVDYDRRKLIAPNHTCTHMLNFALREVLGDHVDQKGSVVLPEKLRFDFSHGKPVDPEHLRRIESIVNEQ 700 (936)
Q Consensus 621 g~l~~G~~V~~~VD~erR~~~m~~HTAtHLL~aALr~vlG~~v~q~Gs~v~~d~lrfDF~~~~~ls~eeL~~IE~~vNei 700 (936)
..+++|++|.++|||+||+.+||+|||+|||++++.+.++ .+..|..+.+++.|+||+... +++.+.++++++|++
T Consensus 75 ~~~~vG~~V~~~IDW~rRy~~mr~HTa~Hlls~~~~~~~~--~~~~g~~i~~d~~~iD~~~e~--~~~~~~~v~~~~ne~ 150 (241)
T COG2872 75 AKLKVGDKVKLKIDWERRYRHMRMHTALHLLSAVLYKVYG--ALTTGFEIGEDYARIDFDGED--TEDEIEEVEALANEL 150 (241)
T ss_pred ccCCCCCEEEEEECcHHHHHHHhhhHHHHHHHHHhhcccc--ceeecceeccccccccccccc--chhhHHHHHHHHHHH
Confidence 4689999999999999999999999999999999999998 455899999999999998543 889999999999999
Q ss_pred HHhcCCEEEEEcCHHHHHhhcCcccccCCcCC---CCEEEEEEcccccccccCCCCCcccceeeeeccCccccccccccc
Q 002324 701 IKAELDVFSKEATLAEAKCINGLRAVFGEVYP---DPVRVVAIGRKVEDLLADPENKEWLSISAELCGGTHLSNTREAEA 777 (936)
Q Consensus 701 I~~nlpV~~~~~~~eEA~~~~g~~alfgE~y~---d~VRVV~Ig~~~~~ll~~p~~~~~~~~svelCgGTHV~nTgeIg~ 777 (936)
|.+|+||...+++.+||.+.++++++-.+.++ ..+|+|+|+ ++++++||||||+||+|||.
T Consensus 151 v~~~~~v~~~~i~~EE~~~~p~~~~~~~~~~~~~~g~iRiV~I~----------------did~qpCgGtHVk~T~EIG~ 214 (241)
T COG2872 151 VKENLPVIIYFIPREEAEKLPGLVKLKNKVPPDVEGKIRIVEIG----------------DIDVQPCGGTHVKNTGEIGE 214 (241)
T ss_pred HHcCCeeeeeecCHHHHhhCcChhhhcccCCccccceEEEEEEC----------------CeeccCCCCcccCCccceEE
Confidence 99999999999999999999998877664333 379999998 68999999999999999999
Q ss_pred EEEEeEeeccCCceEEEEEeChhHH
Q 002324 778 FALLSEEGIAKGIRRITAVTTGLAY 802 (936)
Q Consensus 778 fkI~s~ssi~kGvrRIeavtG~~A~ 802 (936)
|+|++.++++++.+||+|.+|.+|.
T Consensus 215 Iki~k~e~k~k~~~Rv~f~~~~~~~ 239 (241)
T COG2872 215 IKILKTEKKGKGNRRVYFTLGERAS 239 (241)
T ss_pred EEEEEEEEecCceEEEEEEeccccc
Confidence 9999999999999999999999875
No 13
>KOG2105 consensus Predicted metal-dependent hydrolase, contains AlaS domain [General function prediction only]
Probab=100.00 E-value=1.4e-33 Score=295.75 Aligned_cols=308 Identities=22% Similarity=0.254 Sum_probs=238.2
Q ss_pred eeEEEEEEEeCCeeeeeccCCCeEEEEeeceeEEEccCCeeeccceeecccceEEEEEEEEeCCEEEEEEEeecCCcccC
Q 002324 545 HKSVIKAIYTGSEFIESVVPGNEVGIVLASSSFYAEQGGQIFDEGFIEGLFGSFYVRNVQIYGGFVIHIGSLTEGAGRFS 624 (936)
Q Consensus 545 ~~a~Vl~i~~~~~~v~~~~~~~~~~VvLD~T~FYpEgGGQ~~D~G~I~~~~~~~~V~dv~k~~g~i~H~~~~~~~~g~l~ 624 (936)
+++.|++|-.-+. .-.+-+.+.+.|..|++||||||||+|.|++. .+.|..|.+.|...-|.+. .++.
T Consensus 24 fkt~vvsc~p~~~---kk~eieg~~i~lqdtiLfpegggqp~d~gf~~----~v~V~~VsR~G~~A~H~~~-----~~ie 91 (415)
T KOG2105|consen 24 FKTLVVSCEPTKN---KKGEIEGYEIELQDTILFPEGGGQPSDSGFLK----IVEVSHVSRFGLHAKHHVN-----DYIE 91 (415)
T ss_pred ccccccccccccC---CcceeecceeeeeeeEeccCCCCCCCcccccc----ceeEEEeeccccchhhccC-----CCCC
Confidence 4556666654221 00122457899999999999999999999994 4678889888877777764 7899
Q ss_pred CCCEEEEEEcHhhhhhHHhhhhHHHHHHHHHHHHhCCccccccccccCCceEEEecC-CCCCCHHHHHHHHHHHHHHHHh
Q 002324 625 VGEEVICKVDYDRRKLIAPNHTCTHMLNFALREVLGDHVDQKGSVVLPEKLRFDFSH-GKPVDPEHLRRIESIVNEQIKA 703 (936)
Q Consensus 625 ~G~~V~~~VD~erR~~~m~~HTAtHLL~aALr~vlG~~v~q~Gs~v~~d~lrfDF~~-~~~ls~eeL~~IE~~vNeiI~~ 703 (936)
+|.+|.+.|||++|.++|++||++|||.+++.+.|.-.+ ..+.++ ++|--... -.++|.|++..||+.+|+.|..
T Consensus 92 PGt~V~V~VD~qkR~D~MQQHsGQHLitAvad~~fKlkT--tSWelG--~~~sa~e~~~~~mTaeqvaaieqsvNe~I~d 167 (415)
T KOG2105|consen 92 PGTTVEVAVDEQKRMDYMQQHSGQHLITAVADHLFKLKT--TSWELG--RFRSAIELDTPSMTAEQVAAIEQSVNEKIRD 167 (415)
T ss_pred CCCeEEEEecHHHHhHHHHHhcchhHHHHHHHhhhccce--eeeecc--ceeeccccCCCCccHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999886433 222332 33322211 1468999999999999999999
Q ss_pred cCCEEEEEcCHHH--HHhhcCcccccCCcCCCCEEEEEEcccccccccCCCCCcccceeeeeccCcccccccccccEEEE
Q 002324 704 ELDVFSKEATLAE--AKCINGLRAVFGEVYPDPVRVVAIGRKVEDLLADPENKEWLSISAELCGGTHLSNTREAEAFALL 781 (936)
Q Consensus 704 nlpV~~~~~~~eE--A~~~~g~~alfgE~y~d~VRVV~Ig~~~~~ll~~p~~~~~~~~svelCgGTHV~nTgeIg~fkI~ 781 (936)
-+|+.+.+.++++ ..+..| +.++. .-..++|+|.|+ +.+.++||||||+||++|+.++|+
T Consensus 168 ~~~~~v~E~sl~d~eVeqVS~-~~~~D-~haG~iRvvnI~----------------~vDSN~CCGTHvs~~Sdl~vI~IL 229 (415)
T KOG2105|consen 168 RLPVNVRELSLDDPEVEQVSG-RGLPD-DHAGPIRVVNIE----------------GVDSNMCCGTHVSNLSDLQVIKIL 229 (415)
T ss_pred ccchheeecccCCcchhhccC-CCCcc-cccCceEEEeec----------------CccCCccccccccchhhcceEEEe
Confidence 9999999887754 344433 22221 123589999998 678999999999999999999999
Q ss_pred eEeeccCCceEEEEEeChhHHHHHHHHHHHHHHHHHHhcccchhhHHHHHHHHhhhccCCCCCCChhhHHHHHHHHHHHH
Q 002324 782 SEEGIAKGIRRITAVTTGLAYKAFEAACSLEKEVDDASKIEGSLLEKTVASLKSKVDGAAIPAPKKADIRAKIALLQNQV 861 (936)
Q Consensus 782 s~ssi~kGvrRIeavtG~~A~~~~~~~~~~~~~l~~ll~~~~~~~~~~v~~l~~~l~~~~ip~~~~~~l~~~l~~l~~~~ 861 (936)
+.++..+|-.-..++.|.+.+.|.+..+.+++.+..++++. ..+..+++.+++++.
T Consensus 230 gtekg~k~rtN~~f~~GnRV~~~mersh~t~~a~taLLkCg------------------------aed~vEavkk~qnst 285 (415)
T KOG2105|consen 230 GTEKGKKNRTNLIFLSGNRVLKWMERSHGTEKALTALLKCG------------------------AEDHVEAVKKLQNST 285 (415)
T ss_pred eccccccCccceEEEeccHHHHHHHHhcchHHHHHHHHhcc------------------------hHHHHHHHHHHHHHH
Confidence 99988888667888889999999999999999999999975 446778888899999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccCCccEEEEEccCCCCHHHHHHHHH
Q 002324 862 RKAQKKVAEENLQKAVKVATETAEAAASNGKPFCISRVEVGLDAAAVREAVL 913 (936)
Q Consensus 862 ~~~~k~~~~l~~~~a~~~~~~l~~~~~~~~~~~~v~~~~~~~d~~~Lr~~~d 913 (936)
+.++|....+...+|...+.++.....-+|+. +..+.+ .|.+.+.-++|
T Consensus 286 k~LqKnn~~~lr~LA~~iahsL~Ns~d~gG~v-i~~~~e--~~sE~~N~ian 334 (415)
T KOG2105|consen 286 KILQKNNLNLLRDLAVHIAHSLRNSPDWGGVV-ILHRKE--GDSEFMNIIAN 334 (415)
T ss_pred HHHhhhhHHHHHHHHHHHHHHHhcCcCcCceE-Eeehhh--ccHHHHHHHhh
Confidence 99999999999999998888887654445642 333443 35554444443
No 14
>PRK12305 thrS threonyl-tRNA synthetase; Reviewed
Probab=99.81 E-value=3.5e-19 Score=212.74 Aligned_cols=145 Identities=24% Similarity=0.369 Sum_probs=121.1
Q ss_pred HhhhhHHHHHHHHHHHHhCCccccccccccCCceEEEecCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEcCHHHHHhhc
Q 002324 642 APNHTCTHMLNFALREVLGDHVDQKGSVVLPEKLRFDFSHGKPVDPEHLRRIESIVNEQIKAELDVFSKEATLAEAKCIN 721 (936)
Q Consensus 642 m~~HTAtHLL~aALr~vlG~~v~q~Gs~v~~d~lrfDF~~~~~ls~eeL~~IE~~vNeiI~~nlpV~~~~~~~eEA~~~~ 721 (936)
+.+|||+|||++|++++||......| +..++++||||+...++|++++.+||+.||++|++|+||++.+++++||.+++
T Consensus 8 ~~~hS~~hlL~~A~~~~~~~~~~~~~-~~~~~g~~~d~~~~~~it~e~l~~Ie~~m~~lI~~~~pi~~~~v~~eeA~~~f 86 (575)
T PRK12305 8 VIRHSAAHVLAQAVQELFPDAKLGIG-PPIEDGFYYDFDVPEPFTPEDLKKIEKKMKKIIKRGLPFEREEVSREEAREEF 86 (575)
T ss_pred HHHHHHHHHHHHHHHHHcCCceEEeC-CCcCCeEEEEeeCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEecHHHHHHhC
Confidence 57999999999999999986554455 55579999999987789999999999999999999999999999999999875
Q ss_pred Ccc----cccCCcCCCCEEEEEEcccccccccCCCCCcccceeeeeccCcccccccccccEEEEeEeec-------cCCc
Q 002324 722 GLR----AVFGEVYPDPVRVVAIGRKVEDLLADPENKEWLSISAELCGGTHLSNTREAEAFALLSEEGI-------AKGI 790 (936)
Q Consensus 722 g~~----alfgE~y~d~VRVV~Ig~~~~~ll~~p~~~~~~~~svelCgGTHV~nTgeIg~fkI~s~ssi-------~kGv 790 (936)
... .++....++.|||++|| ++ .++||||||+|||+||.|+|+++++. ++++
T Consensus 87 ~~~~~k~~l~~~~~~~~vri~~ig----------------~~-~d~c~Gthv~~T~~i~~f~i~~~~~~~~~~~~~~~~l 149 (575)
T PRK12305 87 ANEPYKLELIDDIPEEGITIYDNG----------------DF-EDLCRGPHVPNTKFIKAFKLTSVAGAYWRGDEKNPQL 149 (575)
T ss_pred CcChhHHHhhhhcCCCeEEEEEEC----------------CE-EEECCCCCCCCccCCceeEEEEEcceEECCCCCCcce
Confidence 321 12222233579999998 33 47899999999999999999999654 7899
Q ss_pred eEEEEEeChhHHHH
Q 002324 791 RRITAVTTGLAYKA 804 (936)
Q Consensus 791 rRIeavtG~~A~~~ 804 (936)
+||++++.+...+.
T Consensus 150 ~Ri~g~~~~~~~~l 163 (575)
T PRK12305 150 QRIYGTAWETKEEL 163 (575)
T ss_pred EEEEEEecCCHHHH
Confidence 99999998876543
No 15
>PRK12444 threonyl-tRNA synthetase; Reviewed
Probab=99.80 E-value=2e-18 Score=208.63 Aligned_cols=144 Identities=23% Similarity=0.353 Sum_probs=120.1
Q ss_pred HhhhhHHHHHHHHHHHHhCCccccccccccCCceEEEecCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEcCHHHHHhhc
Q 002324 642 APNHTCTHMLNFALREVLGDHVDQKGSVVLPEKLRFDFSHGKPVDPEHLRRIESIVNEQIKAELDVFSKEATLAEAKCIN 721 (936)
Q Consensus 642 m~~HTAtHLL~aALr~vlG~~v~q~Gs~v~~d~lrfDF~~~~~ls~eeL~~IE~~vNeiI~~nlpV~~~~~~~eEA~~~~ 721 (936)
+.+||++|||++|++++||......|+.+ ++++||||....++|++++.+||+.||++|.+|+||+..+++++||.+++
T Consensus 74 iy~hS~~hlL~~A~~~~~~~~~~~i~~~~-~~g~y~d~~~~~~it~edl~~Ie~~m~eiI~~~~pI~~~~v~~eeA~~~F 152 (639)
T PRK12444 74 IARHSAAHILAQAVKRLYGDVNLGVGPVI-ENGFYYDMDLPSSVNVEDLRKIEKEMKKIINENIKIERVEVSREEAAKLF 152 (639)
T ss_pred HHHHHHHHHHHHHHHHHcCCcEEEeCCcC-CCeEEEEEeCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEecHHHHHHHH
Confidence 56999999999999999998655566554 79999999987789999999999999999999999999999999999875
Q ss_pred Ccc------cccCCcCC-CCEEEEEEcccccccccCCCCCcccceeeeeccCcccccccccccEEEEeEeec-------c
Q 002324 722 GLR------AVFGEVYP-DPVRVVAIGRKVEDLLADPENKEWLSISAELCGGTHLSNTREAEAFALLSEEGI-------A 787 (936)
Q Consensus 722 g~~------alfgE~y~-d~VRVV~Ig~~~~~ll~~p~~~~~~~~svelCgGTHV~nTgeIg~fkI~s~ssi-------~ 787 (936)
... .++..... +.||+++++ + .+++|+||||+|||+|+.|+|+++++. +
T Consensus 153 ~~~~~~~K~~ll~~~~~~~~v~iy~~~----------------~-~~D~c~G~hv~sTg~ik~f~l~~~~~g~~~g~~~~ 215 (639)
T PRK12444 153 QEMNDRLKLELLEAIPSGESITLYKQG----------------E-FVDLCRGPHLPSTGYLKAFQLTHVSGAYWRGDSNN 215 (639)
T ss_pred hhcCCchHHHHHhcCCCCCeEEEEEEC----------------C-EEEEcCCcCCCCCCCCceeEEEEEcceEEcCCCCC
Confidence 321 11111111 458999987 2 578899999999999999999998886 6
Q ss_pred CCceEEEEEeChhHHH
Q 002324 788 KGIRRITAVTTGLAYK 803 (936)
Q Consensus 788 kGvrRIeavtG~~A~~ 803 (936)
++++||++++.+...+
T Consensus 216 ~~l~Ri~g~a~~~~~~ 231 (639)
T PRK12444 216 QVLQRIYGVAFSSQKE 231 (639)
T ss_pred cceEEEEEEecCCHHH
Confidence 8999999999876554
No 16
>PLN02837 threonine-tRNA ligase
Probab=99.80 E-value=1.3e-18 Score=208.90 Aligned_cols=159 Identities=23% Similarity=0.378 Sum_probs=133.1
Q ss_pred CEEEEEEcHhhhhhHHhhhhHHHHHHHHHHHHhCCccccccccccCCceEEEecCCCCCCHHHHHHHHHHHHHHHHhcCC
Q 002324 627 EEVICKVDYDRRKLIAPNHTCTHMLNFALREVLGDHVDQKGSVVLPEKLRFDFSHGKPVDPEHLRRIESIVNEQIKAELD 706 (936)
Q Consensus 627 ~~V~~~VD~erR~~~m~~HTAtHLL~aALr~vlG~~v~q~Gs~v~~d~lrfDF~~~~~ls~eeL~~IE~~vNeiI~~nlp 706 (936)
.+|.+.+|...|...+.+||++|||++|++++||....+.|+.+ ++++||||.. .++|++++.+||+.||++|.+|+|
T Consensus 30 ~~~~~~~~~~~~~~~~~~HSa~HLL~~Av~~l~~~~~~~ig~~~-~~g~y~D~~~-~~lt~edl~~IEk~m~~iI~~n~p 107 (614)
T PLN02837 30 ERVVLPTNESSEKLLKIRHTCAHVMAMAVQKLFPDAKVTIGPWI-ENGFYYDFDM-EPLTDKDLKRIKKEMDRIISRNLP 107 (614)
T ss_pred ceEEEEeccChhhHHHHHHHHHHHHHHHHHHHcCCcEEEECCcc-CCCEEEEecC-CCCCHHHHHHHHHHHHHHHHcCCC
Confidence 57899999999999999999999999999999987666778665 4899999987 689999999999999999999999
Q ss_pred EEEEEcCHHHHHhhcCcc------cccCCcCCCCEEEEEEcccccccccCCCCCcccceeeeeccCccccccccc--ccE
Q 002324 707 VFSKEATLAEAKCINGLR------AVFGEVYPDPVRVVAIGRKVEDLLADPENKEWLSISAELCGGTHLSNTREA--EAF 778 (936)
Q Consensus 707 V~~~~~~~eEA~~~~g~~------alfgE~y~d~VRVV~Ig~~~~~ll~~p~~~~~~~~svelCgGTHV~nTgeI--g~f 778 (936)
|+..+++++||.+++... .++.....+.||+++|| +.+.++|+||||+|||+| +.|
T Consensus 108 I~~~~v~~eEA~~~f~~~~~~~k~~Ll~~~~~~~Iriy~ig----------------~~~~D~c~GpHv~sTg~I~~~~~ 171 (614)
T PLN02837 108 LVREEVSREEAQKRIMAINEPYKLEILEGIKEEPITIYHIG----------------EEWWDLCAGPHVERTGKINKKAV 171 (614)
T ss_pred EEEEEecHHHHHHHHHHcCCchhHHHhccCCCCeEEEEEEC----------------CeEEEecCCCCcccccccccceE
Confidence 999999999999863210 01111113569999997 346888999999999999 999
Q ss_pred EEEeEeec-------cCCceEEEEEeChhHHH
Q 002324 779 ALLSEEGI-------AKGIRRITAVTTGLAYK 803 (936)
Q Consensus 779 kI~s~ssi-------~kGvrRIeavtG~~A~~ 803 (936)
+|++.++. +..++||++++.+...+
T Consensus 172 kl~~~~g~ywrg~~~~~~l~ri~g~~~~~~~~ 203 (614)
T PLN02837 172 ELESVAGAYWRGDEKNQMLQRIYGTAWESEEQ 203 (614)
T ss_pred EEEEeehhhhcccccCcceEEEEEEecCCHHH
Confidence 99998873 46789999999987543
No 17
>PRK00413 thrS threonyl-tRNA synthetase; Reviewed
Probab=99.79 E-value=3e-18 Score=207.08 Aligned_cols=148 Identities=25% Similarity=0.362 Sum_probs=120.8
Q ss_pred hhHHhhhhHHHHHHHHHHHHhCCccccccccccCCceEEEecCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEcCHHHHH
Q 002324 639 KLIAPNHTCTHMLNFALREVLGDHVDQKGSVVLPEKLRFDFSHGKPVDPEHLRRIESIVNEQIKAELDVFSKEATLAEAK 718 (936)
Q Consensus 639 ~~~m~~HTAtHLL~aALr~vlG~~v~q~Gs~v~~d~lrfDF~~~~~ls~eeL~~IE~~vNeiI~~nlpV~~~~~~~eEA~ 718 (936)
-..+.+||++|||++|++++||......| +..++++||||+...++|++++.+||+.||++|.+|+||+..+++.+||.
T Consensus 67 g~~~y~hS~~hll~~A~~~~~~~~~~~~~-~~~~~g~y~d~~~~~~lt~e~l~~Ie~~m~~iI~~~~pi~~~~v~~~eA~ 145 (638)
T PRK00413 67 GLEIIRHSAAHLLAQAVKRLYPDAKLTIG-PVIENGFYYDFDRERPFTPEDLEAIEKEMKEIIKENYPIEREVVSREEAI 145 (638)
T ss_pred hHHHHhhhHHHHHHHHHHHHcCCceEEEC-CccCCeEEEEEeCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEecHHHHH
Confidence 33467999999999999999986544455 45568999999987789999999999999999999999999999999999
Q ss_pred hhcCcc------cccCCcCC-CCEEEEEEcccccccccCCCCCcccceeeeeccCcccccccccccEEEEeEeec-----
Q 002324 719 CINGLR------AVFGEVYP-DPVRVVAIGRKVEDLLADPENKEWLSISAELCGGTHLSNTREAEAFALLSEEGI----- 786 (936)
Q Consensus 719 ~~~g~~------alfgE~y~-d~VRVV~Ig~~~~~ll~~p~~~~~~~~svelCgGTHV~nTgeIg~fkI~s~ssi----- 786 (936)
+++... .++..... +.||+++++ + ..++||||||+|||+||.|+|+++++.
T Consensus 146 ~~f~~~~~~~k~~ll~~~~~~~~v~iy~~~----------------~-~~d~c~G~hv~~Tg~i~~f~i~~~~~g~~l~~ 208 (638)
T PRK00413 146 ELFKDRGEPYKVELIEEIPEDEEISLYRQG----------------E-FVDLCRGPHVPSTGKIKAFKLLKVAGAYWRGD 208 (638)
T ss_pred HHHHhcCCccHHHHhhcCCCCCeEEEEEEC----------------C-EEEECCCCCCCcccCCceeEEEEEcceEEcCC
Confidence 874321 11111112 378999987 3 368999999999999999999998654
Q ss_pred --cCCceEEEEEeChhHHHH
Q 002324 787 --AKGIRRITAVTTGLAYKA 804 (936)
Q Consensus 787 --~kGvrRIeavtG~~A~~~ 804 (936)
+++++||++++.+...+.
T Consensus 209 ~~~~~l~Ri~g~~~~~~~~l 228 (638)
T PRK00413 209 SKNKMLQRIYGTAFADKKEL 228 (638)
T ss_pred CcchheEEEEeeecCCHHHH
Confidence 789999999999887544
No 18
>TIGR00418 thrS threonyl-tRNA synthetase. This model represents the threonyl-tRNA synthetase found in most organisms. This protein is a class II tRNA synthetase, and is recognized by the pfam model tRNA-synt_2b. Note that B. subtilis has closely related isozymes thrS and thrZ. The N-terminal regions are quite dissimilar between archaeal and eubacterial forms, while some eukaryotic forms are missing sequence there altogether..
Probab=99.68 E-value=3.2e-16 Score=186.97 Aligned_cols=143 Identities=26% Similarity=0.309 Sum_probs=121.1
Q ss_pred hhhHHHHHHHHHHHHhCCccccccccccCCceEEEecCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEcCHHHHHhhcCc
Q 002324 644 NHTCTHMLNFALREVLGDHVDQKGSVVLPEKLRFDFSHGKPVDPEHLRRIESIVNEQIKAELDVFSKEATLAEAKCINGL 723 (936)
Q Consensus 644 ~HTAtHLL~aALr~vlG~~v~q~Gs~v~~d~lrfDF~~~~~ls~eeL~~IE~~vNeiI~~nlpV~~~~~~~eEA~~~~g~ 723 (936)
+||++|||++|+++++|....+.|+.+ ++++||||....++|++++.+||+.||++|.+++||....++++||.+++..
T Consensus 1 ~HS~~hLl~~Al~~~~~~~~~~~~~~i-~~g~~~df~~~~~~t~eel~~Ie~~m~~lI~~~~pi~~~~~~~eeA~~~f~~ 79 (563)
T TIGR00418 1 RHSIAHLLAEALKQLYPDVKLAIGPVV-EDGFYYDFELDRSFTQEDLEKIEKDMKEIAKKNYPVAKLSVSLEEALEAFKV 79 (563)
T ss_pred CChHHHHHHHHHHHHcCCcEEEEcCCc-CCCceecccCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEECHHHHHHHHhc
Confidence 699999999999999998777888777 5679999998788999999999999999999999999999999999986430
Q ss_pred -----ccccCCc-CCCCEEEEEEcccccccccCCCCCcccceeeeeccCcccccccccccEEEEeEeec-------cCCc
Q 002324 724 -----RAVFGEV-YPDPVRVVAIGRKVEDLLADPENKEWLSISAELCGGTHLSNTREAEAFALLSEEGI-------AKGI 790 (936)
Q Consensus 724 -----~alfgE~-y~d~VRVV~Ig~~~~~ll~~p~~~~~~~~svelCgGTHV~nTgeIg~fkI~s~ssi-------~kGv 790 (936)
..++.+. +.+.|+++.++ +++.++|+||||+|||.|+.|+|++.++. +..+
T Consensus 80 ~~~~k~~Ll~~~~~~~~v~vy~~g----------------~~~~d~~~G~~v~~Tg~i~~f~l~~~~~g~~l~~~~~~~l 143 (563)
T TIGR00418 80 LEPYKLELLDEIPNGVKRTPYGWG----------------KAFVDLCKGPHLPNTSFIKAFKLEKVAGAYWRGDSKNKML 143 (563)
T ss_pred cChhHHHHHhcCCCCCeEEEEEeC----------------CEEEEEcCCCcCCCCCCCceeEEEEeccceEeEcCCCCce
Confidence 0122222 44679999997 45889999999999999999999987764 4678
Q ss_pred eEEEEEeChhHHH
Q 002324 791 RRITAVTTGLAYK 803 (936)
Q Consensus 791 rRIeavtG~~A~~ 803 (936)
+||.+++.+...+
T Consensus 144 ~Ri~g~~~~~~~~ 156 (563)
T TIGR00418 144 QRIYGTAWADKKQ 156 (563)
T ss_pred EeeeeccCCCHHH
Confidence 9999999776544
No 19
>PLN02908 threonyl-tRNA synthetase
Probab=99.68 E-value=8.5e-16 Score=186.86 Aligned_cols=178 Identities=20% Similarity=0.234 Sum_probs=137.9
Q ss_pred EEccCCeeeccceeecccceEEEEEEEEeCCEEEEEEEeecCCcccCCCCEEEEEEcHhhhhhHHhhhhHHHHHHHHHHH
Q 002324 578 YAEQGGQIFDEGFIEGLFGSFYVRNVQIYGGFVIHIGSLTEGAGRFSVGEEVICKVDYDRRKLIAPNHTCTHMLNFALRE 657 (936)
Q Consensus 578 YpEgGGQ~~D~G~I~~~~~~~~V~dv~k~~g~i~H~~~~~~~~g~l~~G~~V~~~VD~erR~~~m~~HTAtHLL~aALr~ 657 (936)
-+..+|++.|..+...+++.++.++.. |.+.+. +.+||++|||.+|+++
T Consensus 88 ~a~Vng~l~dL~~~l~~d~~le~l~~~-----------------------------~~eg~~--~y~hS~ahlL~~A~~~ 136 (686)
T PLN02908 88 IAQVDGVLWDMTRPLEGDCKLKLFKFD-----------------------------DDEGRD--TFWHSSAHILGEALEL 136 (686)
T ss_pred EEEECCEEeecCccccCCCeeEEeccc-----------------------------cHHHHH--HHHHHHHHHHHHHHHH
Confidence 355578899988887666666655432 233343 6799999999999999
Q ss_pred HhCCccccccccccC-CceEEEecCC-CCCCHHHHHHHHHHHHHHHHhcCCEEEEEcCHHHHHhhcCcc----cccCCcC
Q 002324 658 VLGDHVDQKGSVVLP-EKLRFDFSHG-KPVDPEHLRRIESIVNEQIKAELDVFSKEATLAEAKCINGLR----AVFGEVY 731 (936)
Q Consensus 658 vlG~~v~q~Gs~v~~-d~lrfDF~~~-~~ls~eeL~~IE~~vNeiI~~nlpV~~~~~~~eEA~~~~g~~----alfgE~y 731 (936)
+||..+ ..|.++++ +++|+||... .++|++++.+||+.|+++|.+++||+..+++++||.+++.-. .+.....
T Consensus 137 ~~~~~l-~ig~~i~~~~Gfy~d~~~~~~~~t~edl~~Ie~~m~~iI~~~~pi~r~~v~~eeA~e~F~~~~~K~~ll~~~~ 215 (686)
T PLN02908 137 EYGCKL-CIGPCTTRGEGFYYDAFYGDRTLNEEDFKPIEARAEKAVKEKQPFERIEVTREEALEMFSENKFKVEIINDLP 215 (686)
T ss_pred HhCCeE-EecCccccCCcEEEEeecCCCCCCHHHHHHHHHHHHHHHhcCCCeEEEEEcHHHHHHHHhhCCcHHHHHhhCC
Confidence 997654 46766754 8999999743 579999999999999999999999999999999999864311 1111111
Q ss_pred -CCCEEEEEEcccccccccCCCCCcccceeeeeccCcccccccccccEEEEeEeec-------cCCceEEEEEeChhHHH
Q 002324 732 -PDPVRVVAIGRKVEDLLADPENKEWLSISAELCGGTHLSNTREAEAFALLSEEGI-------AKGIRRITAVTTGLAYK 803 (936)
Q Consensus 732 -~d~VRVV~Ig~~~~~ll~~p~~~~~~~~svelCgGTHV~nTgeIg~fkI~s~ssi-------~kGvrRIeavtG~~A~~ 803 (936)
.+.|+|+++|+ .+++|+||||+|||+|+.|+|++.++. +..++||++++.+...+
T Consensus 216 ~~~~v~vY~~g~-----------------~~D~c~Gphv~sTg~ik~f~l~~~~~~~~lg~~~~~~lqRi~G~sfp~~~~ 278 (686)
T PLN02908 216 EDATITVYRCGP-----------------LVDLCRGPHIPNTSFVKAFACLKASSAYWRGDVDRESLQRVYGISFPDKKL 278 (686)
T ss_pred CCCeeEEEEECC-----------------EEEecCCCCCCCCCccceeEEEEecceEEcCCCcchhhEEEeeeccCChHH
Confidence 13588888872 478899999999999999999998854 46899999999998765
Q ss_pred H
Q 002324 804 A 804 (936)
Q Consensus 804 ~ 804 (936)
.
T Consensus 279 l 279 (686)
T PLN02908 279 L 279 (686)
T ss_pred H
Confidence 4
No 20
>COG0441 ThrS Threonyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=99.37 E-value=3.7e-12 Score=150.64 Aligned_cols=138 Identities=27% Similarity=0.427 Sum_probs=111.3
Q ss_pred HhhhhHHHHHHHHHHHHhCCccccccccccCCceEEEecCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEcCHHHHHhhc
Q 002324 642 APNHTCTHMLNFALREVLGDHVDQKGSVVLPEKLRFDFSHGKPVDPEHLRRIESIVNEQIKAELDVFSKEATLAEAKCIN 721 (936)
Q Consensus 642 m~~HTAtHLL~aALr~vlG~~v~q~Gs~v~~d~lrfDF~~~~~ls~eeL~~IE~~vNeiI~~nlpV~~~~~~~eEA~~~~ 721 (936)
..+||++|||..|+.++++. ...| .+.+++||+||....++|++++.+||+.|+++|.++++|....+++++|++.+
T Consensus 28 ~~rhs~ah~l~~av~~l~p~--~~~g-p~ie~gfyyd~~~~~~~~~~dl~~ie~~m~~i~~~~~~~~~~~~~~e~a~~~f 104 (589)
T COG0441 28 IIRHSCAHVLAQAVKRLYPD--VTIG-PVIEEGFYYDFDVKEPITPEDLLKIEKEMKEIAKENLPIEREVVSREEARAPF 104 (589)
T ss_pred hhhhHHHHHHHHHHHHhCCC--cccc-CcccceeEEeeccCCCCCHHHHHHHHHHHHHHHHhcCceEEEEecHHHHHHHh
Confidence 45999999999999999998 5578 77889999999988889999999999999999999999999999999999874
Q ss_pred CcccccCCcCCCCEEEEEEcccccccccCCCCCcccceeeeeccCcccccccccccEEEEeEeec-------cCCceEEE
Q 002324 722 GLRAVFGEVYPDPVRVVAIGRKVEDLLADPENKEWLSISAELCGGTHLSNTREAEAFALLSEEGI-------AKGIRRIT 794 (936)
Q Consensus 722 g~~alfgE~y~d~VRVV~Ig~~~~~ll~~p~~~~~~~~svelCgGTHV~nTgeIg~fkI~s~ssi-------~kGvrRIe 794 (936)
+ .|. +.+|+-.. .|-+.+..+...++|-|+||++||.| .|++++.++. +...+||+
T Consensus 105 ~-------~yK--~~~i~~~~-------~~~s~y~~~~~~dlc~gph~~~t~~i-~fkl~~~~~ayw~g~~~~~~l~riy 167 (589)
T COG0441 105 G-------PYK--AELIDCKG-------HPLSEYSQGEFVDLCRGPHVPSTGKI-AFKLLKLAGAYWRGDENNEMLQRIY 167 (589)
T ss_pred h-------hhH--HHHHhcCC-------CCceeEecCccccccCCCCCCccceE-EEEEEEecchhhccCCCCcceeEEe
Confidence 3 232 11111100 12222333447899999999999999 9999988854 56789999
Q ss_pred EEeCh
Q 002324 795 AVTTG 799 (936)
Q Consensus 795 avtG~ 799 (936)
.++..
T Consensus 168 gta~~ 172 (589)
T COG0441 168 GTAFA 172 (589)
T ss_pred ccccC
Confidence 99883
No 21
>PF07973 tRNA_SAD: Threonyl and Alanyl tRNA synthetase second additional domain; InterPro: IPR012947 The catalytically active form of threonyl/alanyl tRNA synthetase is a dimer. Within the tRNA synthetase class II dimer, the bound tRNA interacts with both monomers making specific interactions with the catalytic domain, the C-terminal domain, and this SAD domain (the second additional domain). The second additional domain is comprised of a pair of perpendicularly orientated antiparallel beta sheets, of four and three strands, respectively, that surround a central alpha helix that forms the core of the domain [].; GO: 0005524 ATP binding, 0016876 ligase activity, forming aminoacyl-tRNA and related compounds, 0043039 tRNA aminoacylation, 0005737 cytoplasm; PDB: 3KEW_A 1TKE_A 1TKG_A 1TJE_A 1QF6_A 1TKY_A 1NYQ_B 1NYR_A 2ZTG_A 2ZZF_A ....
Probab=99.34 E-value=1.4e-12 Score=104.16 Aligned_cols=44 Identities=52% Similarity=0.869 Sum_probs=37.8
Q ss_pred EEEEEEcccccccccCCCCCcccceeeeeccCcccccccccccEEEEeEeeccCCceEEE
Q 002324 735 VRVVAIGRKVEDLLADPENKEWLSISAELCGGTHLSNTREAEAFALLSEEGIAKGIRRIT 794 (936)
Q Consensus 735 VRVV~Ig~~~~~ll~~p~~~~~~~~svelCgGTHV~nTgeIg~fkI~s~ssi~kGvrRIe 794 (936)
||||+|+ +++.++||||||+|||+||.|+|++.++.++|++||+
T Consensus 1 vRvv~i~----------------~~~~~~C~GtHv~~T~~i~~~~i~~~~~~~~~~~RI~ 44 (44)
T PF07973_consen 1 VRVVRIG----------------DFDVDLCGGTHVPNTGEIGHFKILKGESKGKGLRRIY 44 (44)
T ss_dssp EEEEEET----------------TTEEEEESS---SBGGGG-CEEEEEEEEEETTEEEEE
T ss_pred CEEEEEC----------------CeeEECCCCcccCChhEECcEEEEEeEEEcCCcEEeC
Confidence 7999998 5799999999999999999999999999999999997
No 22
>smart00863 tRNA_SAD Threonyl and Alanyl tRNA synthetase second additional domain. The catalytically active form of threonyl/alanyl tRNA synthetase is a dimer. Within the tRNA synthetase class II dimer, the bound tRNA interacts with both monomers making specific interactions with the catalytic domain, the C-terminal domain, and this SAD domain (the second additional domain). The second additional domain is comprised of a pair of perpendicularly orientated antiparallel beta sheets, of four and three strands, respectively, that surround a central alpha helix that forms the core of the domain.
Probab=99.03 E-value=2.3e-10 Score=91.08 Aligned_cols=44 Identities=55% Similarity=0.857 Sum_probs=40.4
Q ss_pred EEEEEEcccccccccCCCCCcccceeeeeccCcccccccccccEEEEeEeeccCCceEEE
Q 002324 735 VRVVAIGRKVEDLLADPENKEWLSISAELCGGTHLSNTREAEAFALLSEEGIAKGIRRIT 794 (936)
Q Consensus 735 VRVV~Ig~~~~~ll~~p~~~~~~~~svelCgGTHV~nTgeIg~fkI~s~ssi~kGvrRIe 794 (936)
||+|.|+ +++.++||||||.||++||.|+|++.++...+++||+
T Consensus 1 vriv~i~----------------~~~~~~C~GtHv~~t~~I~~i~i~~~~~~~~~~~Ri~ 44 (44)
T smart00863 1 VRVVSIG----------------DFDVELCGGTHVPNTGEIGAFKILSVSGAYWGLQRIY 44 (44)
T ss_pred CEEEEEC----------------CEEEECCCCcccCChhhCcEEEEEEEeeeecCeEEeC
Confidence 5899998 5789999999999999999999999999888888984
No 23
>PRK14799 thrS threonyl-tRNA synthetase; Provisional
Probab=96.62 E-value=0.0043 Score=74.62 Aligned_cols=46 Identities=13% Similarity=0.121 Sum_probs=40.3
Q ss_pred ceeeeeccC-cccccccccccEEEEeEeec----cCCceEEEEEeChhHHH
Q 002324 758 SISAELCGG-THLSNTREAEAFALLSEEGI----AKGIRRITAVTTGLAYK 803 (936)
Q Consensus 758 ~~svelCgG-THV~nTgeIg~fkI~s~ssi----~kGvrRIeavtG~~A~~ 803 (936)
+..+++|+| |||+|||.|+.|+|++.++. +..++||++++.+.-.+
T Consensus 74 ~~~~~~~~~~ph~~~t~~~~~fkl~~~~~~g~~~~~~l~Riyg~~f~~~~~ 124 (545)
T PRK14799 74 GNKVSIIEDKVSISTNLNPKYFEILNISTHHPNPNEQYVRIRGVAFETEEQ 124 (545)
T ss_pred cCceeecCCCCCCCCCCCcceEEEEEeccCCCccCceeEEEEEeecCCHHH
Confidence 457999999 99999999999999999985 36899999999987543
No 24
>cd00768 class_II_aaRS-like_core Class II tRNA amino-acyl synthetase-like catalytic core domain. Class II amino acyl-tRNA synthetases (aaRS) share a common fold and generally attach an amino acid to the 3' OH of ribose of the appropriate tRNA. PheRS is an exception in that it attaches the amino acid at the 2'-OH group, like class I aaRSs. These enzymes are usually homodimers. This domain is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. The substrate specificity of this reaction is further determined by additional domains. Intererestingly, this domain is also found is asparagine synthase A (AsnA), in the accessory subunit of mitochondrial polymerase gamma and in the bacterial ATP phosphoribosyltransferase regulatory subunit HisZ.
Probab=95.99 E-value=0.022 Score=58.77 Aligned_cols=114 Identities=18% Similarity=0.105 Sum_probs=67.8
Q ss_pred hHHHHHHHHhhhcCCCeeecCCCcccCCCCC--------cceec---ccccccccccc-CCCCC--CCcccccccccccc
Q 002324 61 TKVRDTFFKFFEDKNHVNWKSSPVVPVNDPT--------LLFAN---AGMNQYKPIFL-GTADP--NTQLSKLTRACNTQ 126 (936)
Q Consensus 61 ~eiR~~Fl~fF~~~gH~~v~ssslvp~~Dpt--------llFtn---AGM~qFK~~fl-G~~~p--~~~~~~~~r~~~~Q 126 (936)
+.+.+.+-++|.+.|+..+-++++++..+-. +.+.| ..+..++|-.+ +.... .+....--|+...+
T Consensus 3 ~~~~~~~r~~l~~~Gf~Ev~t~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~LR~s~~~~l~~~~~~n~~~~~~~lfeig 82 (211)
T cd00768 3 SKIEQKLRRFMAELGFQEVETPIVEREPLLEKAGHEPKDLLPVGAENEEDLYLRPTLEPGLVRLFVSHIRKLPLRLAEIG 82 (211)
T ss_pred HHHHHHHHHHHHHcCCEEeEcceecHHHHHHHcCccHhheeeeecCCCCEEEECCCCcHHHHHHHHhhcccCCEEEEEEc
Confidence 5678888999999999999999998742210 11111 01111111111 00000 00000114788899
Q ss_pred cccccCCCCCCCCCCCCCCCccccccccccccccccc-----HHHHHHHHHHHchhccCCC
Q 002324 127 KCIRAGGKHNDLDDVGKDTYHHTFFEMLGNWSFGDYF-----KNEAIEWAWELLTKVYRLP 182 (936)
Q Consensus 127 kCiR~gGKhNDld~VG~t~rHhTfFEMLGnfSFGdYf-----K~eAI~~awe~Lt~~l~l~ 182 (936)
+|.|.. -..-+ .+|..-|.|+|-..+|... -.|++..++++|. .+|++
T Consensus 83 ~vfr~e-----~~~~~--~~~~~ef~~l~~~~~g~~~~~~~~~~~~~~~~~~~l~-~lg~~ 135 (211)
T cd00768 83 PAFRNE-----GGRRG--LRRVREFTQLEGEVFGEDGEEASEFEELIELTEELLR-ALGIK 135 (211)
T ss_pred ceeecC-----CCccc--cccceeEEEcCEEEEcCCchhHHHHHHHHHHHHHHHH-HcCCC
Confidence 999963 11111 3677889999999999643 3678899999986 67874
No 25
>KOG1637 consensus Threonyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=95.45 E-value=0.0066 Score=69.92 Aligned_cols=36 Identities=28% Similarity=0.427 Sum_probs=30.2
Q ss_pred HhhhhHHHHHHHHHHHHhCCccccccccccCCceEEEe
Q 002324 642 APNHTCTHMLNFALREVLGDHVDQKGSVVLPEKLRFDF 679 (936)
Q Consensus 642 m~~HTAtHLL~aALr~vlG~~v~q~Gs~v~~d~lrfDF 679 (936)
..+||++|+|..|+.+.+|.+.. .|-. .+++|++|+
T Consensus 68 vfwhssahvlg~a~e~~~g~~lc-~Gpp-~~~gf~yd~ 103 (560)
T KOG1637|consen 68 VFWHSSAHVLGEALEQEYGAHLC-IGPP-IEEGFYYDM 103 (560)
T ss_pred eeeehhhhHhhHHHHHhcCeeEe-eCCC-CcCceehhh
Confidence 47999999999999999998764 7854 458999886
No 26
>PRK09348 glyQ glycyl-tRNA synthetase subunit alpha; Validated
Probab=94.27 E-value=0.63 Score=50.56 Aligned_cols=177 Identities=21% Similarity=0.294 Sum_probs=102.7
Q ss_pred cCCChhHHHHHHHHhhhcCCCeeecCCCcccCCCCCcceecccccccccc-ccCCCCCCCcccccccccccccccccC-C
Q 002324 56 VEWPATKVRDTFFKFFEDKNHVNWKSSPVVPVNDPTLLFANAGMNQYKPI-FLGTADPNTQLSKLTRACNTQKCIRAG-G 133 (936)
Q Consensus 56 ~~~~~~eiR~~Fl~fF~~~gH~~v~ssslvp~~DptllFtnAGM~qFK~~-flG~~~p~~~~~~~~r~~~~QkCiR~g-G 133 (936)
+.|+-.+|-.+--+|..++|+.++-++.+= + |--.|-|. |+..--|. | -+++-+|+|.|.. |
T Consensus 2 ~~~~fQ~iI~~Lq~fWa~~GC~i~qPyD~E---------v--GAGT~~P~Tflr~Lgpe-p----w~vaYvqPsRRP~DG 65 (283)
T PRK09348 2 KKMTFQDIILTLQDYWADQGCVILQPYDME---------V--GAGTFHPATFLRALGPE-P----WNAAYVQPSRRPTDG 65 (283)
T ss_pred CCCcHHHHHHHHHHHHHHCCCEEECCcccc---------c--ccccCCHHHHHHhcCCC-c----cccccccCCCCCCCC
Confidence 458899999999999999999999877642 2 34467783 44333231 1 3689999999982 1
Q ss_pred CCCCCCCCCCCCCcccccccccccccccccHHHHHHHHHHHchhccCCCCCceEEEEECCCCcCCCCCcHHHHHHHHhcC
Q 002324 134 KHNDLDDVGKDTYHHTFFEMLGNWSFGDYFKNEAIEWAWELLTKVYRLPADRLYATYFGGDEKAGLAPDNEARDIWLKFL 213 (936)
Q Consensus 134 KhNDld~VG~t~rHhTfFEMLGnfSFGdYfK~eAI~~awe~Lt~~l~l~~~rL~vTv~~~d~~~~~~~D~Ea~~iW~~~v 213 (936)
.--+ |--+ -.||.=|..+=--|-.+ ..+.=.+-| +.+||||..
T Consensus 66 RYGe--NPNR-Lq~y~QfQVilKPsP~n-----iQelYL~SL-~~lGid~~~---------------------------- 108 (283)
T PRK09348 66 RYGE--NPNR-LQHYYQFQVILKPSPDN-----IQELYLGSL-EALGIDPLE---------------------------- 108 (283)
T ss_pred CcCC--Cchh-hhhheeeEEEEcCCCcc-----HHHHHHHHH-HHhCCCccc----------------------------
Confidence 1111 2222 34666566655555543 111111111 346776653
Q ss_pred CCCCcccCCCCCCcccCCCCCCCcCceeeEeecCCCCCCCCCCCCCCCCeeEEeeecccccccCCCCccccCCCCccccC
Q 002324 214 PASRVLPFGCKDNFWEMGDTGPCGPCSEIHYDRTGNRDAASLVNNDDPTCIEIWNIVFIQFNRESDGSLKPLPAKHVDTG 293 (936)
Q Consensus 214 ~~~rI~~~g~~dNfW~mG~~GPCGPCsEI~yD~~~~~~~~~~~~~~~~~~lEiWNlVFmq~~r~~~g~l~~Lp~~~IDTG 293 (936)
|=|||- +|| ||-=.-|--|===|+-.|- +||=- |+=|.+ ..| + ++..-.+.-=
T Consensus 109 ---hDIRFV-EDn-WEsPTLGAwGlGWEVWldG-----------------MEITQ--FTYFQQ-vGG-i-~~~pv~~EIT 161 (283)
T PRK09348 109 ---HDIRFV-EDN-WESPTLGAWGLGWEVWLDG-----------------MEVTQ--FTYFQQ-VGG-I-ECKPVTGEIT 161 (283)
T ss_pred ---cceeEe-ecC-CCCCcccccccceEEEECC-----------------eeeee--eeeeee-eCC-e-eccccceeee
Confidence 334552 455 5432224444334444321 55542 222222 223 2 4555566777
Q ss_pred chHHHHHHHHhCCCCCccc
Q 002324 294 LGFERLTSILQNKMSNYDT 312 (936)
Q Consensus 294 mGLERl~~vlqg~~snydt 312 (936)
+||||||+.|||+.|+||.
T Consensus 162 YGLERiamylQ~vd~v~dl 180 (283)
T PRK09348 162 YGLERLAMYLQGVDNVYDL 180 (283)
T ss_pred hhHHHHHHHHhCCCceeee
Confidence 9999999999999999996
No 27
>TIGR00388 glyQ glycyl-tRNA synthetase, tetrameric type, alpha subunit. This tetrameric form of glycyl-tRNA synthetase (2 alpha, 2 beta) is found in the majority of completed eubacterial genomes, with the two genes fused in a few species. A substantially different homodimeric form (not recognized by this model) replaces this form in the Archaea, animals, yeasts, and some eubacteria.
Probab=93.83 E-value=0.41 Score=52.15 Aligned_cols=175 Identities=19% Similarity=0.292 Sum_probs=99.3
Q ss_pred CChhHHHHHHHHhhhcCCCeeecCCCcccCCCCCcceecccccccccc-ccCCCCCCCcccccccccccccccccC-CCC
Q 002324 58 WPATKVRDTFFKFFEDKNHVNWKSSPVVPVNDPTLLFANAGMNQYKPI-FLGTADPNTQLSKLTRACNTQKCIRAG-GKH 135 (936)
Q Consensus 58 ~~~~eiR~~Fl~fF~~~gH~~v~ssslvp~~DptllFtnAGM~qFK~~-flG~~~p~~~~~~~~r~~~~QkCiR~g-GKh 135 (936)
|+-.+|-.+--+|..++|+.++-++.+= + |--.|-|. |+..--|. | -+++-+|+|.|.. |.-
T Consensus 1 m~fQ~iI~~Lq~fWa~~GC~i~QPyD~E---------v--GAGT~hPaTflralgpe-p----w~vAYVqPsRRP~DGRY 64 (293)
T TIGR00388 1 QTFQGLILKLQEYWANQGCLIVQPYDME---------K--GAGTMHPMTFLRSLGPE-P----WAVAYVEPSRRPTDGRY 64 (293)
T ss_pred CCHHHHHHHHHHHHHHCCCEEEcCcccc---------c--ccccCCHHHHHHhcCCC-c----ceeccccCCCCCCCCCC
Confidence 5678888999999999999999877642 2 34467883 44333231 1 3689999999982 111
Q ss_pred CCCCCCCCCCCcccccccccccccccccHHHHHHHHHHHchhccCCCCCceEEEEECCCCcCCCCCcHHHHHHHHhcCCC
Q 002324 136 NDLDDVGKDTYHHTFFEMLGNWSFGDYFKNEAIEWAWELLTKVYRLPADRLYATYFGGDEKAGLAPDNEARDIWLKFLPA 215 (936)
Q Consensus 136 NDld~VG~t~rHhTfFEMLGnfSFGdYfK~eAI~~awe~Lt~~l~l~~~rL~vTv~~~d~~~~~~~D~Ea~~iW~~~v~~ 215 (936)
- +|--+ -.||.=|..+=--|-.+ ..+.=.+-| +.+||||..
T Consensus 65 G--eNPNR-Lq~yyQfQVilKPsP~n-----iQelYL~SL-~~lGid~~~------------------------------ 105 (293)
T TIGR00388 65 G--ENPNR-LQHYYQFQVVIKPSPDN-----IQELYLDSL-RALGIDPTE------------------------------ 105 (293)
T ss_pred C--CCchh-hhheeeeEEEECCCCcc-----HHHHHHHHH-HHhCCCccc------------------------------
Confidence 1 23333 34565566654555543 111111111 245666653
Q ss_pred CCcccCCCCCCcccCCCCCCCcCceeeEeecCCCCCCCCCCCCCCCCeeEEeeecccccccCCCCccccCCCCccccCch
Q 002324 216 SRVLPFGCKDNFWEMGDTGPCGPCSEIHYDRTGNRDAASLVNNDDPTCIEIWNIVFIQFNRESDGSLKPLPAKHVDTGLG 295 (936)
Q Consensus 216 ~rI~~~g~~dNfW~mG~~GPCGPCsEI~yD~~~~~~~~~~~~~~~~~~lEiWNlVFmq~~r~~~g~l~~Lp~~~IDTGmG 295 (936)
|=|||- +|| ||-=.-|--|===|+-.|- +||=- |+=|.+ .-| + ++..-.+.-=+|
T Consensus 106 -hDIRFV-EDn-WEsPTLGAwGlGWEVWldG-----------------MEITQ--FTYFQQ-vGG-i-~~~pv~~EITYG 160 (293)
T TIGR00388 106 -HDIRFV-EDN-WENPTLGAWGLGWEVWLDG-----------------MEVTQ--FTYFQQ-VGG-L-ECKPVSVEITYG 160 (293)
T ss_pred -cCeeEe-ecC-CCCCcccccccccEEEECC-----------------eeeee--eeeeee-eCC-e-eccccceeeehh
Confidence 334552 455 5432224444334444321 55532 222232 223 2 333345666799
Q ss_pred HHHHHHHHhCCCCCccc
Q 002324 296 FERLTSILQNKMSNYDT 312 (936)
Q Consensus 296 LERl~~vlqg~~snydt 312 (936)
|||||+.||||.|.||.
T Consensus 161 LERiaMylQ~vd~v~dl 177 (293)
T TIGR00388 161 LERLAMYIQGVENVYDL 177 (293)
T ss_pred HHHHHHHHhCCCeeeee
Confidence 99999999999999986
No 28
>PRK14908 glycyl-tRNA synthetase; Provisional
Probab=91.57 E-value=1.3 Score=56.68 Aligned_cols=176 Identities=20% Similarity=0.319 Sum_probs=104.0
Q ss_pred CCChhHHHHHHHHhhhcCCCeeecCCCcccCCCCCcceecccccccccc-ccCCCCCCCcccccccccccccccccC-CC
Q 002324 57 EWPATKVRDTFFKFFEDKNHVNWKSSPVVPVNDPTLLFANAGMNQYKPI-FLGTADPNTQLSKLTRACNTQKCIRAG-GK 134 (936)
Q Consensus 57 ~~~~~eiR~~Fl~fF~~~gH~~v~ssslvp~~DptllFtnAGM~qFK~~-flG~~~p~~~~~~~~r~~~~QkCiR~g-GK 134 (936)
.|+-.+|-.+--+|+.++|+.++-++.+= -|--.|-|. |+..--|. | -+++-+|+|.|.. |.
T Consensus 4 ~~~~q~~i~~l~~~w~~~gc~~~qp~~~e-----------~gagt~~p~t~~~~l~~~-~----~~~ayv~p~~rp~d~r 67 (1000)
T PRK14908 4 PLTMQDMLLALLRYWSEQGCIIHQGYDLE-----------VGAGTFNPATFLRVLGPE-P----WRVAYVEPSRRPDDGR 67 (1000)
T ss_pred cccHHHHHHHHHHHHHHCCCEEECCcccc-----------cccCcCCHHHHHhhcCCC-C----CcccccCCCCCCCCCC
Confidence 37899999999999999999999877642 234467773 44333231 1 3689999999982 11
Q ss_pred CCCCCCCCCCCCcccccccccccccccccHHHHHHHHHHHchhccCCCCCceEEEEECCCCcCCCCCcHHHHHHHHhcCC
Q 002324 135 HNDLDDVGKDTYHHTFFEMLGNWSFGDYFKNEAIEWAWELLTKVYRLPADRLYATYFGGDEKAGLAPDNEARDIWLKFLP 214 (936)
Q Consensus 135 hNDld~VG~t~rHhTfFEMLGnfSFGdYfK~eAI~~awe~Lt~~l~l~~~rL~vTv~~~d~~~~~~~D~Ea~~iW~~~v~ 214 (936)
.- +|--+ -+||+=|..+=--|-++ ..+.=.+-| +.+|||+..
T Consensus 68 yg--~npnr-l~~~~q~qvi~kp~p~~-----~q~~yl~sl-~~~gi~~~~----------------------------- 109 (1000)
T PRK14908 68 YG--QNPNR-LQTYTQFQVILKPVPGN-----PQELYLESL-KAIGIDLRD----------------------------- 109 (1000)
T ss_pred cC--CCchh-hhhheeeEEEECCCCcc-----HHHHHHHHH-HHcCCCccc-----------------------------
Confidence 11 23332 45777777766666654 111111112 346777653
Q ss_pred CCCcccCCCCCCcccCCCCCCCcCceeeEeecCCCCCCCCCCCCCCCCeeEEeeecccccccCCCCccccCCCCccccCc
Q 002324 215 ASRVLPFGCKDNFWEMGDTGPCGPCSEIHYDRTGNRDAASLVNNDDPTCIEIWNIVFIQFNRESDGSLKPLPAKHVDTGL 294 (936)
Q Consensus 215 ~~rI~~~g~~dNfW~mG~~GPCGPCsEI~yD~~~~~~~~~~~~~~~~~~lEiWNlVFmq~~r~~~g~l~~Lp~~~IDTGm 294 (936)
|=+|| .+|| |+-=.-|--|===|+-.| -+||=- |+=|.+ ..| + ++..-.+.-=+
T Consensus 110 --~dirf-ved~-we~p~lga~glgwevw~~-----------------gmeitq--ftyfqq-~gg-~-~~~~~~~eity 163 (1000)
T PRK14908 110 --HDIRF-VHDD-WENPTIGAWGLGWEVWLD-----------------GMEITQ--FTYFQQ-AGG-K-PLDPISGEITY 163 (1000)
T ss_pred --cceeE-eecC-CCCCcccccccccEEEEC-----------------Ceeeee--eeeehh-cCC-e-eccccceeeec
Confidence 22444 2455 443222444433444432 155542 222222 333 3 45555677789
Q ss_pred hHHHHHHHHhCCCCCccc
Q 002324 295 GFERLTSILQNKMSNYDT 312 (936)
Q Consensus 295 GLERl~~vlqg~~snydt 312 (936)
|||||++.|||+.+.||.
T Consensus 164 gler~~m~~q~~~~~~~~ 181 (1000)
T PRK14908 164 GIERIAMYLQKVNHFKDI 181 (1000)
T ss_pred cHHHHHHHHhCCCeeeee
Confidence 999999999999999986
No 29
>cd00733 GlyRS_alpha_core Class II Glycyl-tRNA synthetase (GlyRS) alpha subunit core catalytic domain. GlyRS functions as a homodimer in eukaryotes, archaea and some bacteria and as a heterotetramer in the remainder of prokaryotes and in arabidopsis. It is responsible for the attachment of glycine to the 3' OH group of ribose of the appropriate tRNA. This domain is primarily responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. This alignment contains only sequences from the GlyRS form which heterotetramerizes. The homodimer form of GlyRS is in a different family of class II aaRS. Class II assignment is based upon structure and the presence of three characteristic sequence motifs.
Probab=91.03 E-value=2.7 Score=45.78 Aligned_cols=173 Identities=21% Similarity=0.329 Sum_probs=97.3
Q ss_pred hhHHHHHHHHhhhcCCCeeecCCCcccCCCCCcceecccccccccc-ccCCCCCCCcccccccccccccccccC-CCCCC
Q 002324 60 ATKVRDTFFKFFEDKNHVNWKSSPVVPVNDPTLLFANAGMNQYKPI-FLGTADPNTQLSKLTRACNTQKCIRAG-GKHND 137 (936)
Q Consensus 60 ~~eiR~~Fl~fF~~~gH~~v~ssslvp~~DptllFtnAGM~qFK~~-flG~~~p~~~~~~~~r~~~~QkCiR~g-GKhND 137 (936)
-.+|-.+--+|..++|+.++-++.+= -|--.|-|. |+..--|. | -+++-+|+|.|.. |.--+
T Consensus 2 fQ~iI~~Lq~fW~~~GC~i~qPyD~E-----------vGAGT~hPaTflr~Lgpe-p----w~vAYVqPsrRP~DGRYGe 65 (279)
T cd00733 2 FQDLILKLQKFWASQGCLIIQPYDME-----------VGAGTFHPATFLRALGPE-P----WNVAYVEPSRRPTDGRYGE 65 (279)
T ss_pred HHHHHHHHHHHHHHCCCEEEcCcccc-----------cccccCCHHHHHHhcCCC-c----ceeccccCCCCCCCCCcCC
Confidence 35677778899999999998777642 244467783 44333231 1 3689999999982 21111
Q ss_pred CCCCCCCCCcccccccccccccccccHHHHHHHHHHHchhccCCCCCceEEEEECCCCcCCCCCcHHHHHHHHhcCCCCC
Q 002324 138 LDDVGKDTYHHTFFEMLGNWSFGDYFKNEAIEWAWELLTKVYRLPADRLYATYFGGDEKAGLAPDNEARDIWLKFLPASR 217 (936)
Q Consensus 138 ld~VG~t~rHhTfFEMLGnfSFGdYfK~eAI~~awe~Lt~~l~l~~~rL~vTv~~~d~~~~~~~D~Ea~~iW~~~v~~~r 217 (936)
|--+ -.||.=|..+=--|-.+ ..+.=.+-| +.+||||.. |
T Consensus 66 --NPNR-Lq~y~QfQViiKPsP~n-----iQelYL~SL-~~lGid~~~-------------------------------h 105 (279)
T cd00733 66 --NPNR-LQHYYQFQVIIKPSPDN-----IQELYLESL-EALGINPKE-------------------------------H 105 (279)
T ss_pred --Cchh-hhhheeeEEEECCCCcc-----HHHHHHHHH-HHhCCCccc-------------------------------c
Confidence 2222 34565566654444443 111111112 246666653 3
Q ss_pred cccCCCCCCcccCCCCCCCcCceeeEeecCCCCCCCCCCCCCCCCeeEEeeecccccccCCCCccccCCCCccccCchHH
Q 002324 218 VLPFGCKDNFWEMGDTGPCGPCSEIHYDRTGNRDAASLVNNDDPTCIEIWNIVFIQFNRESDGSLKPLPAKHVDTGLGFE 297 (936)
Q Consensus 218 I~~~g~~dNfW~mG~~GPCGPCsEI~yD~~~~~~~~~~~~~~~~~~lEiWNlVFmq~~r~~~g~l~~Lp~~~IDTGmGLE 297 (936)
=+||- +|| ||-=.-|--|===|+-.|- +||=- |+=|.+ ..| + ++..-.+.-=+|||
T Consensus 106 DIRFV-EDn-WEsPTLGAwGLGWEVWldG-----------------MEITQ--FTYFQQ-vGG-i-~~~pv~~EiTYGLE 161 (279)
T cd00733 106 DIRFV-EDN-WESPTLGAWGLGWEVWLDG-----------------MEVTQ--FTYFQQ-VGG-I-PCKPISVEITYGLE 161 (279)
T ss_pred CeeEe-ecC-CCCCcccccccccEEEECC-----------------eeeee--eeeeee-eCC-e-eccccceeeehhHH
Confidence 34552 455 5432224444444544321 55542 222222 223 2 34445666779999
Q ss_pred HHHHHHhCCCCCccc
Q 002324 298 RLTSILQNKMSNYDT 312 (936)
Q Consensus 298 Rl~~vlqg~~snydt 312 (936)
|||+.|||+.|.||.
T Consensus 162 RiamylQ~vd~v~dl 176 (279)
T cd00733 162 RIAMYLQGVDNVYDI 176 (279)
T ss_pred HHHHHHhCCCceecc
Confidence 999999999999996
No 30
>COG0752 GlyQ Glycyl-tRNA synthetase, alpha subunit [Translation, ribosomal structure and biogenesis]
Probab=90.83 E-value=1.6 Score=47.20 Aligned_cols=62 Identities=15% Similarity=0.212 Sum_probs=44.4
Q ss_pred CcCCChhHHHHHHHHhhhcCCCeeecCCCcccCCCCCcceecccccccccc-ccCCCCCCCcccccccccccccccccC
Q 002324 55 VVEWPATKVRDTFFKFFEDKNHVNWKSSPVVPVNDPTLLFANAGMNQYKPI-FLGTADPNTQLSKLTRACNTQKCIRAG 132 (936)
Q Consensus 55 ~~~~~~~eiR~~Fl~fF~~~gH~~v~ssslvp~~DptllFtnAGM~qFK~~-flG~~~p~~~~~~~~r~~~~QkCiR~g 132 (936)
.++|+-..|--+-.+|..++|+.++-++-+ + + |--.|-|+ ||..--|. | =.|+-+|+|-|.+
T Consensus 2 ~~~~~fQ~~IltLq~yW~~qGC~i~QpyD~-e--------v--GAGT~hPaTfLralGpe-P----w~aAYVqPSRRP~ 64 (298)
T COG0752 2 NKKLTFQGLILTLQNYWAEQGCTILQPYDM-E--------V--GAGTFHPATFLRALGPE-P----WNAAYVQPSRRPT 64 (298)
T ss_pred CccccHHHHHHHHHHHHHHcCCEEeccccc-c--------c--ccCcCChHHHHHhcCCC-c----cceeeeccCCCCC
Confidence 356888999999999999999999876654 2 2 44468885 55333331 1 2578899999984
No 31
>cd00669 Asp_Lys_Asn_RS_core Asp_Lys_Asn_tRNA synthetase class II core domain. This domain is the core catalytic domain of class II aminoacyl-tRNA synthetases of the subgroup containing aspartyl, lysyl, and asparaginyl tRNA synthetases. It is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs. Nearly all class II tRNA synthetases are dimers and enzymes in this subgroup are homodimers. These enzymes attach a specific amino acid to the 3' OH group of ribose of the appropriate tRNA.
Probab=89.30 E-value=0.63 Score=51.45 Aligned_cols=102 Identities=17% Similarity=0.271 Sum_probs=57.3
Q ss_pred hHHHHHHHHhhhcCCCeeecCCCccc-CCCC-Ccceeccccccc---cccccCCCCCCC----ccccccccccccccccc
Q 002324 61 TKVRDTFFKFFEDKNHVNWKSSPVVP-VNDP-TLLFANAGMNQY---KPIFLGTADPNT----QLSKLTRACNTQKCIRA 131 (936)
Q Consensus 61 ~eiR~~Fl~fF~~~gH~~v~ssslvp-~~Dp-tllFtnAGM~qF---K~~flG~~~p~~----~~~~~~r~~~~QkCiR~ 131 (936)
++|-+.+-+||.++|-..|..--+.+ ..++ +-+|.-. .| ++++|-+.+--. -.+.+.|+-...+|.|.
T Consensus 5 s~i~~~ir~~f~~~gf~ev~tP~l~~~~~~~~~~~f~~~---~~~~g~~~~L~~Spql~~~~~~~~~~~~vf~i~~~fR~ 81 (269)
T cd00669 5 SKIIKAIRDFMDDRGFLEVETPMLQKITGGAGARPFLVK---YNALGLDYYLRISPQLFKKRLMVGGLDRVFEINRNFRN 81 (269)
T ss_pred HHHHHHHHHHHHHCCCEEEECCEEeccCCccccceEEee---ecCCCCcEEeecCHHHHHHHHHhcCCCcEEEEecceeC
Confidence 57888899999999999885444432 1111 1122110 01 222332211000 00124577788899995
Q ss_pred CCCCCCCCCCCCCCCcccccccccc-cccccccHHHHHHHHHHHch
Q 002324 132 GGKHNDLDDVGKDTYHHTFFEMLGN-WSFGDYFKNEAIEWAWELLT 176 (936)
Q Consensus 132 gGKhNDld~VG~t~rHhTfFEMLGn-fSFGdYfK~eAI~~awe~Lt 176 (936)
| +.|.||..=|-||-- .+|.|| +|.+..+=+++.
T Consensus 82 -----e----~~~~~hl~EF~~le~e~~~~~~--~dvm~~~e~lv~ 116 (269)
T cd00669 82 -----E----DLRARHQPEFTMMDLEMAFADY--EDVIELTERLVR 116 (269)
T ss_pred -----C----CCCCCcccceeEEEEEEecCCH--HHHHHHHHHHHH
Confidence 4 347899999999854 367776 455555554443
No 32
>PF02091 tRNA-synt_2e: Glycyl-tRNA synthetase alpha subunit; InterPro: IPR002310 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. In eubacteria, glycyl-tRNA synthetase (6.1.1.14 from EC) is an alpha2/beta2 tetramer composed of 2 different subunits [, , ]. In some eubacteria, in archaea and eukaryota, glycyl-tRNA synthetase is an alpha2 dimer (see IPR002315 from INTERPRO). It belongs to class IIc and is one of the most complex synthetases. What is most interesting is the lack of similarity between the two types: divergence at the sequence level is so great that it is impossible to infer descent from common genes. The alpha and beta subunits (see IPR002311 from INTERPRO) also lack significant sequence similarity. However, they are translated from a single mRNA [], and a single chain glycyl-tRNA synthetase from Chlamydia trachomatis has been found to have significant similarity with both domains, suggesting divergence from a single polypeptide chain []. This entry represents the alpha subunit of glycyl-tRNA synthetase.; GO: 0000166 nucleotide binding, 0004820 glycine-tRNA ligase activity, 0005524 ATP binding, 0006426 glycyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3RF1_A 3UFG_B 3RGL_B 1J5W_B.
Probab=81.48 E-value=0.76 Score=50.16 Aligned_cols=172 Identities=23% Similarity=0.352 Sum_probs=83.7
Q ss_pred hHHHHHHHHhhhcCCCeeecCCCcccCCCCCcceeccccccccc-cccCCCCCCCcccccccccccccccccC-CCCCCC
Q 002324 61 TKVRDTFFKFFEDKNHVNWKSSPVVPVNDPTLLFANAGMNQYKP-IFLGTADPNTQLSKLTRACNTQKCIRAG-GKHNDL 138 (936)
Q Consensus 61 ~eiR~~Fl~fF~~~gH~~v~ssslvp~~DptllFtnAGM~qFK~-~flG~~~p~~~~~~~~r~~~~QkCiR~g-GKhNDl 138 (936)
.+|-.+--+|..++|+.++.++.+= -|--.|-| -|+..-.|. | -+++=+|+|.|.. |.--
T Consensus 2 Q~iI~~Lq~fW~~~GC~i~qPyD~e-----------vGAGT~~P~Tflr~Lgpe-p----w~vaYVqPsrRP~DGRYG-- 63 (284)
T PF02091_consen 2 QDIILTLQKFWADQGCIILQPYDIE-----------VGAGTFHPATFLRALGPE-P----WNVAYVQPSRRPTDGRYG-- 63 (284)
T ss_dssp HHHHHHHHHHHHCTT-EE----SS-------------SSGGGSHHHHTTTSSSS------EEEEEEEEEE-GGG--TT--
T ss_pred HHHHHHHHHHHHHCCCEEECCcccc-----------cccccCCHHHHHHhcCCC-C----ccccccccCCCCCCCccC--
Confidence 3566677789999999999877652 24446777 355444332 1 3789999999982 2211
Q ss_pred CCCCCCCCcccccccccccccccccHHHHHHHHHHHchhccCCCCCceEEEEECCCCcCCCCCcHHHHHHHHhcCCCCCc
Q 002324 139 DDVGKDTYHHTFFEMLGNWSFGDYFKNEAIEWAWELLTKVYRLPADRLYATYFGGDEKAGLAPDNEARDIWLKFLPASRV 218 (936)
Q Consensus 139 d~VG~t~rHhTfFEMLGnfSFGdYfK~eAI~~awe~Lt~~l~l~~~rL~vTv~~~d~~~~~~~D~Ea~~iW~~~v~~~rI 218 (936)
+|--+ -.||.=|..+=--|-++ ..+.=.+-| +.+||++.. |=
T Consensus 64 eNPNR-Lq~y~QfQVilKPsP~n-----iq~lYL~SL-~~lGId~~~-------------------------------hD 105 (284)
T PF02091_consen 64 ENPNR-LQHYYQFQVILKPSPDN-----IQELYLESL-EALGIDPKE-------------------------------HD 105 (284)
T ss_dssp TSSS---SEEEEEEEEEES--TT-----HHHHHHHHH-HHCT--CCC-------------------------------S-
T ss_pred CCchH-hhhhheeEEEEcCCCcc-----HHHHHHHHH-HHhCCCccc-------------------------------cc
Confidence 24443 34555556554444443 111111112 246666653 33
Q ss_pred ccCCCCCCcccCCCCCCCcCceeeEeecCCCCCCCCCCCCCCCCeeEEeeecccccccCCCCccccCCCCccccCchHHH
Q 002324 219 LPFGCKDNFWEMGDTGPCGPCSEIHYDRTGNRDAASLVNNDDPTCIEIWNIVFIQFNRESDGSLKPLPAKHVDTGLGFER 298 (936)
Q Consensus 219 ~~~g~~dNfW~mG~~GPCGPCsEI~yD~~~~~~~~~~~~~~~~~~lEiWNlVFmq~~r~~~g~l~~Lp~~~IDTGmGLER 298 (936)
||| .+|| ||-=.-|--|-==|+-.|- +||=- |+=|.+ .-| + ++..-.+.-=+||||
T Consensus 106 IRF-VEDn-WEsPtLGAwGlGWEVWldG-----------------MEITQ--fTYFQQ-vGG-i-~~~pv~~EITYGLER 161 (284)
T PF02091_consen 106 IRF-VEDN-WESPTLGAWGLGWEVWLDG-----------------MEITQ--FTYFQQ-VGG-I-DCKPVSVEITYGLER 161 (284)
T ss_dssp EEE-EEE--EEETTTTEEEEEEEEEETT-----------------CEEEE--EEEEEE-ETT-E-E-SS--EEEEEEHHH
T ss_pred eeE-eecC-CCCCcccccccccEEEECC-----------------EEEEE--eeeeee-eCC-c-cccccceehhhhHHH
Confidence 444 2455 5432124444334444321 55542 222222 223 2 455556777799999
Q ss_pred HHHHHhCCCCCccc
Q 002324 299 LTSILQNKMSNYDT 312 (936)
Q Consensus 299 l~~vlqg~~snydt 312 (936)
||+.|||+++.||.
T Consensus 162 iamylQ~vdnv~dl 175 (284)
T PF02091_consen 162 IAMYLQGVDNVYDL 175 (284)
T ss_dssp HHHHHCT-SSGGGS
T ss_pred HHHHHhCCCeeEee
Confidence 99999999999997
No 33
>PRK03932 asnC asparaginyl-tRNA synthetase; Validated
Probab=79.73 E-value=21 Score=42.61 Aligned_cols=105 Identities=17% Similarity=0.257 Sum_probs=57.6
Q ss_pred hHHHHHHHHhhhcCCCeeecCCCcccCC-CCCc-ceec-ccc-----ccc-cccccCCCCCC---Ccccccccccccccc
Q 002324 61 TKVRDTFFKFFEDKNHVNWKSSPVVPVN-DPTL-LFAN-AGM-----NQY-KPIFLGTADPN---TQLSKLTRACNTQKC 128 (936)
Q Consensus 61 ~eiR~~Fl~fF~~~gH~~v~ssslvp~~-Dptl-lFtn-AGM-----~qF-K~~flG~~~p~---~~~~~~~r~~~~QkC 128 (936)
+.|-+.+-+||.++|...|..--|.+.. ++.. +|.- +-+ +-| ++++|-+.+-- --.+.+.|+-...+|
T Consensus 137 s~i~~~iR~f~~~~gf~EV~TP~L~~~~~eg~~~~F~v~~~~~~~~~~~~~~~~~L~~Spql~lq~l~~g~~rVf~i~~~ 216 (450)
T PRK03932 137 NTLAQAIHEFFNENGFVWVDTPIITASDCEGAGELFRVTTLDLDFSKDFFGKEAYLTVSGQLYAEAYAMALGKVYTFGPT 216 (450)
T ss_pred HHHHHHHHHHHHHCCCEEecCCceeccCCCCCCCceEeecccccccccccCCCcccccCHHHHHHHHHhccCCeEEeeec
Confidence 4566778899999999988654444321 1111 1211 101 111 33344322100 000125788888999
Q ss_pred cccCCCCCCCCCCCCCCCcccccccccc-cccccccHHHHHHHHHHHc
Q 002324 129 IRAGGKHNDLDDVGKDTYHHTFFEMLGN-WSFGDYFKNEAIEWAWELL 175 (936)
Q Consensus 129 iR~gGKhNDld~VG~t~rHhTfFEMLGn-fSFGdYfK~eAI~~awe~L 175 (936)
.|+. + ..|.||..=|-||-- .+|.|| +|.+..+=+++
T Consensus 217 FR~E-------~-~~t~rHl~EFt~lE~e~~~~~~--~~~m~~~e~li 254 (450)
T PRK03932 217 FRAE-------N-SNTRRHLAEFWMIEPEMAFADL--EDNMDLAEEML 254 (450)
T ss_pred cccC-------C-CCCccccccccccceEEeccCH--HHHHHHHHHHH
Confidence 9973 2 246799888888864 377776 45555544443
No 34
>cd00670 Gly_His_Pro_Ser_Thr_tRS_core Gly_His_Pro_Ser_Thr_tRNA synthetase class II core domain. This domain is the core catalytic domain of tRNA synthetases of the subgroup containing glycyl, histidyl, prolyl, seryl and threonyl tRNA synthetases. It is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. These enzymes belong to class II aminoacyl-tRNA synthetases (aaRS) based upon their structure and the presence of three characteristic sequence motifs in the core domain. This domain is also found at the C-terminus of eukaryotic GCN2 protein kinase and at the N-terminus of the ATP phosphoribosyltransferase accessory subunit, HisZ and the accessory subunit of mitochondrial polymerase gamma (Pol gamma b) . Most class II tRNA synthetases are dimers, with this subgroup consisting of mostly homodimers. These enzymes attach a specific amino acid to the 3' OH group of ribose of the appropriate tRNA.
Probab=77.64 E-value=12 Score=39.55 Aligned_cols=106 Identities=20% Similarity=0.228 Sum_probs=65.4
Q ss_pred hHHHHHHHHhhhcCCCeeecCCCcccCCCCCcceeccc--------ccccc----------------------ccccCCC
Q 002324 61 TKVRDTFFKFFEDKNHVNWKSSPVVPVNDPTLLFANAG--------MNQYK----------------------PIFLGTA 110 (936)
Q Consensus 61 ~eiR~~Fl~fF~~~gH~~v~ssslvp~~DptllFtnAG--------M~qFK----------------------~~flG~~ 110 (936)
..|.+.+.+.|++.|...|....+.|.+ +|...| |..|. .++....
T Consensus 6 ~~l~~~~~~~~~~~G~~ei~~P~l~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LrP~~~~~i~~~~~~~~ 81 (235)
T cd00670 6 RALERFLDDRMAEYGYQEILFPFLAPTV----LFFKGGHLDGYRKEMYTFEDKGRELRDTDLVLRPAACEPIYQIFSGEI 81 (235)
T ss_pred HHHHHHHHHHHHHcCCEEEECCeEcCHH----HHhhcCCcccchhhcCeeccCcccccCCeEEEecCCCHHHHHHHhccC
Confidence 4688888899999999888777777632 122222 22221 1112111
Q ss_pred CC--CCcccccccccccccccccCCCCCCCCCC-CCCCCccccccccccccccc-----ccHHHHHHHHHHHchhccCCC
Q 002324 111 DP--NTQLSKLTRACNTQKCIRAGGKHNDLDDV-GKDTYHHTFFEMLGNWSFGD-----YFKNEAIEWAWELLTKVYRLP 182 (936)
Q Consensus 111 ~p--~~~~~~~~r~~~~QkCiR~gGKhNDld~V-G~t~rHhTfFEMLGnfSFGd-----YfK~eAI~~awe~Lt~~l~l~ 182 (936)
.+ .-| -|.+...+|.|. ....- |. .|-+- |.|.|-..||+ ..-.|.+..++++|. .+|+|
T Consensus 82 ~~~~~lP----~r~~~~g~~fR~-----E~~~~~gl-~R~re-F~q~e~~~~~~~~~~~~~~~e~~~~~~~~l~-~lgl~ 149 (235)
T cd00670 82 LSYRALP----LRLDQIGPCFRH-----EPSGRRGL-MRVRE-FRQVEYVVFGEPEEAEEERREWLELAEEIAR-ELGLP 149 (235)
T ss_pred ccchhcC----eeeeeecccccC-----CCCCCCCC-hhhee-eeeceEEEEcCHHHHHHHHHHHHHHHHHHHH-HcCCc
Confidence 11 112 378889999995 33321 22 24444 79999999984 345678999999996 46885
No 35
>TIGR00458 aspS_arch aspartyl-tRNA synthetase, archaeal type. In a multiple sequence alignment of representative asparaginyl-tRNA synthetases (asnS), archaeal/eukaryotic type aspartyl-tRNA synthetases (aspS_arch), and bacterial type aspartyl-tRNA synthetases (aspS_bact), there is a striking similarity between asnS and aspS_arch in gap pattern and in sequence, and a striking divergence of aspS_bact. Consequently, a separate model was built for each of the three groups. This model, aspS_arch, represents aspartyl-tRNA synthetases from the eukaryotic cytosol and from the Archaea. In some species, this enzyme aminoacylates tRNA for both Asp and Asn; Asp-tRNA(asn) is subsequently transamidated to Asn-tRNA(asn).
Probab=77.36 E-value=17 Score=43.05 Aligned_cols=99 Identities=15% Similarity=0.242 Sum_probs=58.6
Q ss_pred HHHHHHHHhhhcCCCeeecCCCcccCCCCCcceeccccccc------cccccCCCCCCC----ccccccccccccccccc
Q 002324 62 KVRDTFFKFFEDKNHVNWKSSPVVPVNDPTLLFANAGMNQY------KPIFLGTADPNT----QLSKLTRACNTQKCIRA 131 (936)
Q Consensus 62 eiR~~Fl~fF~~~gH~~v~ssslvp~~DptllFtnAGM~qF------K~~flG~~~p~~----~~~~~~r~~~~QkCiR~ 131 (936)
.|-+.+-+||.++|-..|..--|++. ++ -.|-..| ++.+|-+.+--+ -.+.+.|+-...+|.|+
T Consensus 138 ~i~~~iR~ff~~~gf~EV~TP~L~~~-~~-----eg~~~~f~v~~~~~~~yL~~Spql~~q~li~~g~~rVf~i~~~FR~ 211 (428)
T TIGR00458 138 GVLESVREFLAEEGFIEVHTPKLVAS-AT-----EGGTELFPITYFEREAFLGQSPQLYKQQLMAAGFERVYEIGPIFRA 211 (428)
T ss_pred HHHHHHHHHHHHCCCEEEeCCceecC-CC-----CCCcceeeeEecCCcEEECcCHHHHHHHHHhcccCcEEEEeccccc
Confidence 45566778999999998865445431 10 0122223 334443332100 00125688888999997
Q ss_pred CCCCCCCCCCCCCCCccccccccccc-ccccccHHHHHHHHHHHch
Q 002324 132 GGKHNDLDDVGKDTYHHTFFEMLGNW-SFGDYFKNEAIEWAWELLT 176 (936)
Q Consensus 132 gGKhNDld~VG~t~rHhTfFEMLGnf-SFGdYfK~eAI~~awe~Lt 176 (936)
. +. .|.||.+=|-||--. +|.|| ++.++.+=+++.
T Consensus 212 E-------~~-~t~rHl~EFt~lE~e~a~~~~--~dlm~~~e~li~ 247 (428)
T TIGR00458 212 E-------EH-NTHRHLNEATSIDIEMAFEDH--HDVMDILEELVV 247 (428)
T ss_pred C-------CC-CCccchheeeEeeeeeccCCH--HHHHHHHHHHHH
Confidence 3 23 356999888888554 77887 666666655544
No 36
>PRK00488 pheS phenylalanyl-tRNA synthetase subunit alpha; Validated
Probab=77.27 E-value=2.8 Score=47.89 Aligned_cols=28 Identities=11% Similarity=0.107 Sum_probs=18.8
Q ss_pred ChhHHHHHHHHhhhcCCCeeecCCCccc
Q 002324 59 PATKVRDTFFKFFEDKNHVNWKSSPVVP 86 (936)
Q Consensus 59 ~~~eiR~~Fl~fF~~~gH~~v~ssslvp 86 (936)
...++++.--++|.+-|-+.+-+..|..
T Consensus 109 Pl~~~~~~Ir~if~~mGF~ev~gpeIes 136 (339)
T PRK00488 109 PITQTIEEIEDIFVGMGFEVAEGPEIET 136 (339)
T ss_pred HHHHHHHHHHHHHHhCCCEEEeCCcccc
Confidence 3455666666666777888887776643
No 37
>PTZ00450 macrophage migration inhibitory factor-like protein; Provisional
Probab=74.99 E-value=2 Score=41.63 Aligned_cols=23 Identities=30% Similarity=0.567 Sum_probs=20.2
Q ss_pred HHHHHHchhccCCCCCceEEEEE
Q 002324 169 EWAWELLTKVYRLPADRLYATYF 191 (936)
Q Consensus 169 ~~awe~Lt~~l~l~~~rL~vTv~ 191 (936)
+---++|+++||||+||+|+.|+
T Consensus 79 ~~i~~~l~~~LgIp~dRiYI~f~ 101 (113)
T PTZ00450 79 PRITAAITKECGIPAERIYVFYY 101 (113)
T ss_pred HHHHHHHHHHcCCCcccEEEEEE
Confidence 44568899999999999999997
No 38
>KOG1759 consensus Macrophage migration inhibitory factor [Defense mechanisms]
Probab=70.49 E-value=2.8 Score=40.56 Aligned_cols=22 Identities=32% Similarity=0.590 Sum_probs=19.9
Q ss_pred HHHHchhccCCCCCceEEEEEC
Q 002324 171 AWELLTKVYRLPADRLYATYFG 192 (936)
Q Consensus 171 awe~Lt~~l~l~~~rL~vTv~~ 192 (936)
--|+|.+.|+|||+|+|++||.
T Consensus 80 l~~il~~~L~l~~~rv~I~f~d 101 (115)
T KOG1759|consen 80 LTEILEKELSLDPDRVYIKFYD 101 (115)
T ss_pred HHHHHHHHhCCCCCeEEEEEec
Confidence 4688999999999999999984
No 39
>KOG1501 consensus Arginine N-methyltransferase [General function prediction only]
Probab=69.02 E-value=3.8 Score=47.90 Aligned_cols=80 Identities=21% Similarity=0.265 Sum_probs=56.3
Q ss_pred ccccCchHHHHHHHHhCCCCCccccccHHHHHHHHHHhCCCCCCCCCCCCccccccchhhhh----hhhhhhhh---eee
Q 002324 289 HVDTGLGFERLTSILQNKMSNYDTDVFMPIFDAIQQATGARPYSGKVGADDADKVDMAYRVV----ADHIRTLS---FAI 361 (936)
Q Consensus 289 ~IDTGmGLERl~~vlqg~~snydtDlF~pii~~i~~~~~~~~y~g~~~~~~~~~~d~a~rvI----aDH~R~~~---f~i 361 (936)
.|+||-||=-+-+|--|.++.|-..+|.|+.+...++.-+.+.+.++..- ++..+-..|+ ||-+-+-. =+|
T Consensus 72 digtGTGLLSmMAvragaD~vtA~EvfkPM~d~arkI~~kng~SdkI~vI--nkrStev~vg~~~RadI~v~e~fdtEli 149 (636)
T KOG1501|consen 72 DIGTGTGLLSMMAVRAGADSVTACEVFKPMVDLARKIMHKNGMSDKINVI--NKRSTEVKVGGSSRADIAVREDFDTELI 149 (636)
T ss_pred EccCCccHHHHHHHHhcCCeEEeehhhchHHHHHHHHHhcCCCccceeee--ccccceeeecCcchhhhhhHhhhhhhhh
Confidence 58899999999999999999999999999999999987665555433210 1111112333 44443333 378
Q ss_pred cCCCccCCC
Q 002324 362 ADGSCPGNE 370 (936)
Q Consensus 362 aDG~~PsN~ 370 (936)
..|++||=+
T Consensus 150 geGalps~q 158 (636)
T KOG1501|consen 150 GEGALPSLQ 158 (636)
T ss_pred ccccchhHH
Confidence 999999844
No 40
>PF01411 tRNA-synt_2c: tRNA synthetases class II (A); InterPro: IPR018164 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. Alanyl-tRNA synthetase (6.1.1.7 from EC) is an alpha4 tetramer that belongs to class IIc. ; GO: 0000166 nucleotide binding, 0004813 alanine-tRNA ligase activity, 0005524 ATP binding, 0006419 alanyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3HY1_A 3HXZ_C 3HXY_A 3HXU_A 3HY0_B 3HXV_A 3HXX_A 3HXW_A 2E1B_A 2ZZG_B ....
Probab=64.63 E-value=1.3 Score=53.93 Aligned_cols=80 Identities=25% Similarity=0.179 Sum_probs=58.5
Q ss_pred CCCCCcccCCCCCCcccCCCCCCCcCceeeEeecCCCCCCCCCCCCCCCCeeEEeeecc---cccccCCCCccccCCCCc
Q 002324 213 LPASRVLPFGCKDNFWEMGDTGPCGPCSEIHYDRTGNRDAASLVNNDDPTCIEIWNIVF---IQFNRESDGSLKPLPAKH 289 (936)
Q Consensus 213 v~~~rI~~~g~~dNfW~mG~~GPCGPCsEI~yD~~~~~~~~~~~~~~~~~~lEiWNlVF---mq~~r~~~g~l~~Lp~~~ 289 (936)
+|++||.-- ...| -|-||+|=|.++ |+ .|.-+++| |+|....++ ....|-.-
T Consensus 116 i~~~~l~vt---~~~~----d~ea~~~w~~~~---g~--------------~~~~i~~~~~~~nfw~~g~~-gpcgpcse 170 (552)
T PF01411_consen 116 IPPDRLYVT---VFEW----DGEAGEIWEKIV---GG--------------PEERILVFGKKDNFWEMGDT-GPCGPCSE 170 (552)
T ss_dssp --GGGEEEE---EECC----ECCCCCCCCECC---TT--------------ECCCEEEE-CCEEEEESSTS-EEEEEEEE
T ss_pred CChHhEEEE---EeCC----chhHHHHHHHhc---CC--------------CHHHeEecCCCCceEECCCC-CCCCCCEE
Confidence 899988763 2223 248888888762 22 56677888 888866553 67899999
Q ss_pred cccCchHHHHHHHHhCCCCCccccccHHH
Q 002324 290 VDTGLGFERLTSILQNKMSNYDTDVFMPI 318 (936)
Q Consensus 290 IDTGmGLERl~~vlqg~~snydtDlF~pi 318 (936)
||+|+|+||..|..++.++.|+. .|..|
T Consensus 171 I~~d~G~e~~~~~~~~~~~~~~~-~~~ei 198 (552)
T PF01411_consen 171 IFYDRGEERGCWDSQGTPTCDDD-RFLEI 198 (552)
T ss_dssp EEEEEECCCHHHHHHSTSSHHHH-HECCC
T ss_pred EEECCCcccCccccccccccccc-cHHHH
Confidence 99999999999999999997764 45544
No 41
>PF01422 zf-NF-X1: NF-X1 type zinc finger; InterPro: IPR000967 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a domain presumed to be a zinc binding domain. The following pattern describes the zinc finger: C-X(1-6)-H-X-C-X3-C(H/C)-X(3-4)-(H/C)-X(1-10)-C where X can be any amino acid, and numbers in brackets indicate the number of residues. The two position can be either His or Cys. This domain is found in the human transcriptional repressor NK-X1, a repressor of HLA-DRA transcription; the Drosophila shuttle craft protein, which plays an essential role during the late stages of embryonic neurogenesis; and a yeast hypothetical protein YNL023C. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0008270 zinc ion binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=64.22 E-value=2.9 Score=28.39 Aligned_cols=9 Identities=56% Similarity=1.678 Sum_probs=7.7
Q ss_pred CCCCcCcee
Q 002324 233 TGPCGPCSE 241 (936)
Q Consensus 233 ~GPCGPCsE 241 (936)
.|||+||++
T Consensus 12 ~G~C~pC~~ 20 (20)
T PF01422_consen 12 PGPCPPCPQ 20 (20)
T ss_pred CCcCCCCCC
Confidence 599999974
No 42
>COG0497 RecN ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=58.48 E-value=92 Score=38.18 Aligned_cols=99 Identities=9% Similarity=0.072 Sum_probs=66.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHhcccchhhHHHHHHHHhhhccCCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002324 799 GLAYKAFEAACSLEKEVDDASKIEGSLLEKTVASLKSKVDGAAIPAPKKADIRAKIALLQNQVRKAQKKVAEENLQKAVK 878 (936)
Q Consensus 799 ~~A~~~~~~~~~~~~~l~~ll~~~~~~~~~~v~~l~~~l~~~~ip~~~~~~l~~~l~~l~~~~~~~~k~~~~l~~~~a~~ 878 (936)
+..++.+......+..|++--+.+++++.+-.++++.+|....-......+|..+++.+..++.++-+++.+.+.+.|..
T Consensus 296 p~~L~~ve~Rl~~L~~l~RKY~~~~~~l~~~~~~~~~el~~L~~~~~~~~~Le~~~~~l~~~~~~~A~~Ls~~R~~~A~~ 375 (557)
T COG0497 296 PNRLEEVEERLFALKSLARKYGVTIEDLLEYLDKIKEELAQLDNSEESLEALEKEVKKLKAELLEAAEALSAIRKKAAKE 375 (557)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555444444455544455667777777777777765555555677788888888888888888888888888877
Q ss_pred HHHHHHHHhcc---CCccEEEE
Q 002324 879 VATETAEAAAS---NGKPFCIS 897 (936)
Q Consensus 879 ~~~~l~~~~~~---~~~~~~v~ 897 (936)
..+.+.++.+. .+.+|.|.
T Consensus 376 L~~~v~~eL~~L~Me~a~F~ve 397 (557)
T COG0497 376 LEKEVTAELKALAMEKARFTVE 397 (557)
T ss_pred HHHHHHHHHHhcCCCCceEEEE
Confidence 77777665543 35555554
No 43
>PTZ00397 macrophage migration inhibition factor-like protein; Provisional
Probab=57.83 E-value=11 Score=36.28 Aligned_cols=29 Identities=10% Similarity=0.256 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHchhccCCCCCceEEEEEC
Q 002324 164 KNEAIEWAWELLTKVYRLPADRLYATYFG 192 (936)
Q Consensus 164 K~eAI~~awe~Lt~~l~l~~~rL~vTv~~ 192 (936)
|++-.+---++|.+.||+||+|+||.+++
T Consensus 74 k~~l~~~i~~~l~~~lgi~~~rv~I~f~~ 102 (116)
T PTZ00397 74 NSSIAAAITKILASHLKVKSERVYIEFKD 102 (116)
T ss_pred HHHHHHHHHHHHHHHhCcCcccEEEEEEE
Confidence 55566666788999999999999999875
No 44
>PF01187 MIF: Macrophage migration inhibitory factor (MIF); InterPro: IPR001398 Macrophage migration inhibitory factor (MIF) is a key regulatory cytokine within innate and adaptive immune responses, capable of promoting and modulating the magnitude of the response []. MIF is released from T-cells and macrophages, and acts within the neuroendocrine system. MIF is capable of tautomerase activity, although its biological function has not been fully characterised. It is induced by glucocorticoid and is capable of overriding the anti-inflammatory actions of glucocorticoid []. MIF regulates cytokine secretion and the expression of receptors involved in the immune response. It can be taken up into target cells in order to interact with intracellular signalling molecules, inhibiting p53 function, and/or activating components of the mitogen-activated protein kinase and Jun-activation domain-binding protein-1 (Jab-1) []. MIF has been linked to various inflammatory diseases, such as rheumatoid arthritis and atherosclerosis []. The MIF homologue D-dopachrome tautomerase (4.1.1.84 from EC) is involved in detoxification through the conversion of dopaminechrome (and possibly norepinephrinechrome), the toxic quinine product of the neurotransmitter dopamine (and norepinephrine), to an indole derivative that can serve as a precursor to neuromelanin [, ].; PDB: 1UIZ_C 3FWT_A 1HFO_F 2WKB_D 3RF4_B 2OS5_A 3RF5_A 2XCZ_A 3FWU_A 3B64_A ....
Probab=51.87 E-value=7.3 Score=37.41 Aligned_cols=22 Identities=27% Similarity=0.591 Sum_probs=17.3
Q ss_pred HHHHchhccCCCCCceEEEEEC
Q 002324 171 AWELLTKVYRLPADRLYATYFG 192 (936)
Q Consensus 171 awe~Lt~~l~l~~~rL~vTv~~ 192 (936)
--+||.+.||||++|+||.++.
T Consensus 79 i~~~l~~~LgIp~~Riyi~f~d 100 (114)
T PF01187_consen 79 ITEFLEEELGIPPDRIYINFHD 100 (114)
T ss_dssp HHHHHHHHHT--GGGEEEEEEE
T ss_pred HHHHHHHHhCCCcCceEEEEEE
Confidence 3578999999999999999974
No 45
>PF06810 Phage_GP20: Phage minor structural protein GP20; InterPro: IPR009636 This family consists of several phage minor structural protein Gp20 sequences and prophage sequences of around 180 residues in length. The function of this family is unknown.; GO: 0005198 structural molecule activity
Probab=51.63 E-value=45 Score=34.15 Aligned_cols=94 Identities=13% Similarity=0.162 Sum_probs=53.7
Q ss_pred hHHHHHHHHhhhccCCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhccCCccEEE-------E
Q 002324 826 LEKTVASLKSKVDGAAIPAPKKADIRAKIALLQNQVRKAQKKVAEENLQK-AVKVATETAEAAASNGKPFCI-------S 897 (936)
Q Consensus 826 ~~~~v~~l~~~l~~~~ip~~~~~~l~~~l~~l~~~~~~~~k~~~~l~~~~-a~~~~~~l~~~~~~~~~~~~v-------~ 897 (936)
..+.|+.|+... ...++|..+|+.|+.+++..+++.++-..++ ....+...+..+...+.+.|. .
T Consensus 39 ~d~~i~~Lk~~~-------~d~eeLk~~i~~lq~~~~~~~~~~e~~l~~~~~~~ai~~al~~akakn~~av~allD~d~l 111 (155)
T PF06810_consen 39 ADKQIKDLKKSA-------KDNEELKKQIEELQAKNKTAKEEYEAKLAQMKKDSAIKSALKGAKAKNPKAVKALLDLDKL 111 (155)
T ss_pred HHHHHHHHHhcc-------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHhcCHHHe
Confidence 344455555532 3577899999999999985444443322222 122334444433322222211 1
Q ss_pred EccCCCCHHHHHHHHHHHHhhhhHHHHhhc
Q 002324 898 RVEVGLDAAAVREAVLKVIEQKVYQRNQTR 927 (936)
Q Consensus 898 ~~~~~~d~~~Lr~~~d~l~~k~~~~~~~~~ 927 (936)
.++++. ...|.+.+..|++..|||-..+-
T Consensus 112 ~l~~dg-~~Gldeqi~~lkes~~yLF~~~~ 140 (155)
T PF06810_consen 112 KLDDDG-LKGLDEQIKALKESDPYLFEEEE 140 (155)
T ss_pred eeCCCc-cccHHHHHHHHHhcCchhccCCc
Confidence 333333 66788999999999999977654
No 46
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=49.43 E-value=1.3e+02 Score=36.76 Aligned_cols=88 Identities=10% Similarity=0.074 Sum_probs=51.4
Q ss_pred hHHHHHHHHHHHHHHHHHHhcccchhhHHHHHHHHhhhccCCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002324 800 LAYKAFEAACSLEKEVDDASKIEGSLLEKTVASLKSKVDGAAIPAPKKADIRAKIALLQNQVRKAQKKVAEENLQKAVKV 879 (936)
Q Consensus 800 ~A~~~~~~~~~~~~~l~~ll~~~~~~~~~~v~~l~~~l~~~~ip~~~~~~l~~~l~~l~~~~~~~~k~~~~l~~~~a~~~ 879 (936)
..++.++......+.+..--+.+.+++.+..+++..++....-......++..+++++.+++.++.+++.+.+.+.|...
T Consensus 301 ~~L~ele~RL~~l~~LkrKyg~s~e~l~~~~~~l~~eL~~l~~~~~~le~L~~el~~l~~~l~~~a~~Ls~~R~~~a~~l 380 (563)
T TIGR00634 301 ERLNEIEERLAQIKRLKRKYGASVEEVLEYAEKIKEELDQLDDSDESLEALEEEVDKLEEELDKAAVALSLIRRKAAERL 380 (563)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444445566777777777777644333345666777777777777777777776666666555
Q ss_pred HHHHHHHh
Q 002324 880 ATETAEAA 887 (936)
Q Consensus 880 ~~~l~~~~ 887 (936)
.+.+....
T Consensus 381 ~~~v~~~l 388 (563)
T TIGR00634 381 AKRVEQEL 388 (563)
T ss_pred HHHHHHHH
Confidence 55554444
No 47
>PRK10869 recombination and repair protein; Provisional
Probab=46.77 E-value=1.6e+02 Score=36.11 Aligned_cols=87 Identities=10% Similarity=0.063 Sum_probs=47.6
Q ss_pred HHHHHHHHHHHHHHHHHhcccchhhHHHHHHHHhhhccCCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002324 802 YKAFEAACSLEKEVDDASKIEGSLLEKTVASLKSKVDGAAIPAPKKADIRAKIALLQNQVRKAQKKVAEENLQKAVKVAT 881 (936)
Q Consensus 802 ~~~~~~~~~~~~~l~~ll~~~~~~~~~~v~~l~~~l~~~~ip~~~~~~l~~~l~~l~~~~~~~~k~~~~l~~~~a~~~~~ 881 (936)
++.++..-...+.|+.--+.+.+++.+..+++..+|+...=.-....+|..+++++.+++.++.+++.+.+.+.|....+
T Consensus 298 l~~ie~Rl~~l~~L~rKyg~~~~~~~~~~~~l~~eL~~L~~~e~~l~~Le~e~~~l~~~l~~~A~~LS~~R~~aA~~l~~ 377 (553)
T PRK10869 298 LAELEQRLSKQISLARKHHVSPEELPQHHQQLLEEQQQLDDQEDDLETLALAVEKHHQQALETAQKLHQSRQRYAKELAQ 377 (553)
T ss_pred HHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444433334444443444556666666666666653222222345566667777777777776776666666666555
Q ss_pred HHHHHhc
Q 002324 882 ETAEAAA 888 (936)
Q Consensus 882 ~l~~~~~ 888 (936)
.+.....
T Consensus 378 ~v~~~L~ 384 (553)
T PRK10869 378 LITESMH 384 (553)
T ss_pred HHHHHHH
Confidence 5554443
No 48
>PTZ00326 phenylalanyl-tRNA synthetase alpha chain; Provisional
Probab=44.42 E-value=48 Score=40.00 Aligned_cols=123 Identities=20% Similarity=0.250 Sum_probs=70.8
Q ss_pred ccccccccccccCCCCCCCCCCCCCCCc-ccccccccccccc-cccHHHHHHHHHHHchhccCCCCCceEEEEECCCCcC
Q 002324 120 TRACNTQKCIRAGGKHNDLDDVGKDTYH-HTFFEMLGNWSFG-DYFKNEAIEWAWELLTKVYRLPADRLYATYFGGDEKA 197 (936)
Q Consensus 120 ~r~~~~QkCiR~gGKhNDld~VG~t~rH-hTfFEMLGnfSFG-dYfK~eAI~~awe~Lt~~l~l~~~rL~vTv~~~d~~~ 197 (936)
-|..+..+|.| ||=. |+.| +.|..|=| +-+| +.=-.+-+..+-+|+.. +|+..=|+--+||.
T Consensus 358 ~k~fsigrVfR-----~d~~----DatH~~eFhQ~Eg-~vi~~~~s~~~L~~~l~~f~~~-lG~~~~RfrP~yfP----- 421 (494)
T PTZ00326 358 KKYFSIDRVFR-----NETL----DATHLAEFHQVEG-FVIDRNLTLGDLIGTIREFFRR-IGITKLRFKPAFNP----- 421 (494)
T ss_pred ceEEecCCEec-----CCCC----CCCcCceeEEEEE-EEEeCCCCHHHHHHHHHHHHHh-cCCCceEEecCCCC-----
Confidence 37788889999 4633 2334 34444422 2222 11124678888888865 58865566666663
Q ss_pred CCCCcHHHHHHHHhcCCCCCcccCCCCCCcccCCCCCCCcCceeeEeecCCCCCCCCCCCCCCCCeeEEeeeccccccc-
Q 002324 198 GLAPDNEARDIWLKFLPASRVLPFGCKDNFWEMGDTGPCGPCSEIHYDRTGNRDAASLVNNDDPTCIEIWNIVFIQFNR- 276 (936)
Q Consensus 198 ~~~~D~Ea~~iW~~~v~~~rI~~~g~~dNfW~mG~~GPCGPCsEI~yD~~~~~~~~~~~~~~~~~~lEiWNlVFmq~~r- 276 (936)
| | =|.-||+.-+.+ +..||||-|.=..+=+-
T Consensus 422 -----------------------f-----------T---EPS~Ev~v~~~~-----------~gkWIEIgg~Gm~rpevL 453 (494)
T PTZ00326 422 -----------------------Y-----------T---EPSMEIFGYHPG-----------LKKWVEVGNSGIFRPEML 453 (494)
T ss_pred -----------------------C-----------C---CCeeEEEEEecC-----------CCcEEEEeCcCccCHHHH
Confidence 1 2 246777754422 13588888765444221
Q ss_pred CCCCccccCCCCccccCchHHHHHHHHhCCCC
Q 002324 277 ESDGSLKPLPAKHVDTGLGFERLTSILQNKMS 308 (936)
Q Consensus 277 ~~~g~l~~Lp~~~IDTGmGLERl~~vlqg~~s 308 (936)
.+-| + |=+...+==||||||+|++.-|.+.
T Consensus 454 ~~~G-i-~~~~~~~A~GlGleRlaMi~ygi~D 483 (494)
T PTZ00326 454 RPMG-F-PEDVTVIAWGLSLERPTMIKYGIKN 483 (494)
T ss_pred HhcC-C-CCcceEEEEEecHHHHHHHHhCCcH
Confidence 1112 2 1122356779999999999988554
No 49
>smart00438 ZnF_NFX Repressor of transcription.
Probab=42.13 E-value=11 Score=27.34 Aligned_cols=11 Identities=45% Similarity=1.304 Sum_probs=8.9
Q ss_pred CCCCcCceeeE
Q 002324 233 TGPCGPCSEIH 243 (936)
Q Consensus 233 ~GPCGPCsEI~ 243 (936)
.|||+||.+..
T Consensus 12 ~G~C~pC~~~~ 22 (26)
T smart00438 12 PGPCPPCKQXX 22 (26)
T ss_pred CCcCcCccccc
Confidence 49999999654
No 50
>COG0016 PheS Phenylalanyl-tRNA synthetase alpha subunit [Translation, ribosomal structure and biogenesis]
Probab=42.12 E-value=25 Score=40.25 Aligned_cols=122 Identities=25% Similarity=0.289 Sum_probs=66.1
Q ss_pred ccccccccccccCCCCCCCCCCCCCCCc-ccccccc-----cccccccccHHHHHHHHHHHchhccCCC-CCceEEEEEC
Q 002324 120 TRACNTQKCIRAGGKHNDLDDVGKDTYH-HTFFEML-----GNWSFGDYFKNEAIEWAWELLTKVYRLP-ADRLYATYFG 192 (936)
Q Consensus 120 ~r~~~~QkCiR~gGKhNDld~VG~t~rH-hTfFEML-----GnfSFGdYfK~eAI~~awe~Lt~~l~l~-~~rL~vTv~~ 192 (936)
-|+.+..+|.| ||-. |+.| +-|..+= -|.||.| -...--+|+.+-+|.+ +=|.--+||.
T Consensus 193 ~k~~~~grvyR-----~D~~----DaTHs~~FhQiEGlvvd~~~s~~~-----Lkg~L~~f~~~~fg~~~~vRfrpsyFP 258 (335)
T COG0016 193 IKIFSPGRVYR-----NDTV----DATHSPEFHQIEGLVVDKNISFAD-----LKGTLEEFAKKFFGEDVKVRFRPSYFP 258 (335)
T ss_pred ceEecccceec-----CCCC----CcccchheeeeEEEEEeCCccHHH-----HHHHHHHHHHHhcCCCcceEeecCCCC
Confidence 48899999999 5733 3455 4454554 4666664 2223335555555565 4565556653
Q ss_pred CCCcCCCCCcHHHHHHHHhcCCCCCcccCCCCCCcccCCCCCCCcCceeeEeecCCCCCCCCCCCCCCCCeeEEeeeccc
Q 002324 193 GDEKAGLAPDNEARDIWLKFLPASRVLPFGCKDNFWEMGDTGPCGPCSEIHYDRTGNRDAASLVNNDDPTCIEIWNIVFI 272 (936)
Q Consensus 193 ~d~~~~~~~D~Ea~~iW~~~v~~~rI~~~g~~dNfW~mG~~GPCGPCsEI~yD~~~~~~~~~~~~~~~~~~lEiWNlVFm 272 (936)
| | =|.-|++....+ |..||||.+-=-.
T Consensus 259 ----------------------------F-----------T---EPS~Evdv~~~~-----------~~~WlEi~G~Gmv 285 (335)
T COG0016 259 ----------------------------F-----------T---EPSAEVDVYCPG-----------CGGWLEILGCGMV 285 (335)
T ss_pred ----------------------------C-----------C---CCeEEEEEEEcC-----------CCCEEEEeccccc
Confidence 1 2 246677644321 1357888753211
Q ss_pred ccccCCCCccccCCCCccccCchHHHHHHHHhCCCC
Q 002324 273 QFNRESDGSLKPLPAKHVDTGLGFERLTSILQNKMS 308 (936)
Q Consensus 273 q~~r~~~g~l~~Lp~~~IDTGmGLERl~~vlqg~~s 308 (936)
.=|--....+.|-+-...==|||+||||++.-|.+.
T Consensus 286 ~P~VL~~~G~~~~~~~GfAfGlGlERlAMLkygI~D 321 (335)
T COG0016 286 HPNVLEAVGIDPEEYSGFAFGLGLERLAMLKYGIPD 321 (335)
T ss_pred CHHHHHhcCCCCCcceEEEEeecHHHHHHHHhCCcH
Confidence 111111111212222222669999999999988653
No 51
>PF01409 tRNA-synt_2d: tRNA synthetases class II core domain (F); InterPro: IPR002319 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. Phenylalanyl-tRNA synthetase (6.1.1.20 from EC) is an alpha2/beta2 tetramer composed of 2 subunits that belongs to class IIc. In eubacteria, a small subunit (pheS gene) can be designated as beta (E. coli) or alpha subunit (nomenclature adopted in InterPro). Reciprocally the large subunit (pheT gene) can be designated as alpha (E. coli) or beta (see IPR004531 from INTERPRO and IPR004532 from INTERPRO). In all other kingdoms the two subunits have equivalent length in eukaryota, and can be identified by specific signatures. The enzyme from Thermus thermophilus has an alpha 2 beta 2 type quaternary structure and is one of the most complicated members of the synthetase family. Identification of phenylalanyl-tRNA synthetase as a member of class II aaRSs was based only on sequence alignment of the small alpha-subunit with other synthetases [].; GO: 0000049 tRNA binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0043039 tRNA aminoacylation, 0005737 cytoplasm; PDB: 3TUP_A 3HFV_A 3CMQ_A 3TEG_A 2AKW_B 1B70_B 1B7Y_B 2ALY_B 2IY5_B 2AMC_B ....
Probab=41.99 E-value=13 Score=40.84 Aligned_cols=26 Identities=19% Similarity=0.193 Sum_probs=21.2
Q ss_pred ChhHHHHHHHHhhhcCCCeeecCCCc
Q 002324 59 PATKVRDTFFKFFEDKNHVNWKSSPV 84 (936)
Q Consensus 59 ~~~eiR~~Fl~fF~~~gH~~v~sssl 84 (936)
...++++.-.++|.+-|...+..+++
T Consensus 18 p~~~~~~~i~~~~~~~Gf~e~~~~~v 43 (247)
T PF01409_consen 18 PITKFIREIRDIFVGMGFQEVEGPEV 43 (247)
T ss_dssp HHHHHHHHHHHHHHCTTSEEESTTSE
T ss_pred HHHHHHHHHHHHHHHCCCeEeeCCeE
Confidence 35677777788889999999997777
No 52
>PF12999 PRKCSH-like: Glucosidase II beta subunit-like
Probab=40.15 E-value=1e+02 Score=32.35 Aligned_cols=40 Identities=18% Similarity=0.208 Sum_probs=28.8
Q ss_pred CCCCcccceeeeeccCcccccccccccEEEEeEeeccCCceE
Q 002324 751 PENKEWLSISAELCGGTHLSNTREAEAFALLSEEGIAKGIRR 792 (936)
Q Consensus 751 p~~~~~~~~svelCgGTHV~nTgeIg~fkI~s~ssi~kGvrR 792 (936)
|++..-++.+.+..|.-|..|.|.+..+ +..++|+.|+-=
T Consensus 61 ~DGSDEPGTsAC~~~~FyC~N~g~~p~~--i~~s~VnDGICD 100 (176)
T PF12999_consen 61 PDGSDEPGTSACSNGKFYCENKGHIPRY--IPSSRVNDGICD 100 (176)
T ss_pred CCCCCccccccCcCceEeeccCCCCCce--eehhhhcCCcCc
Confidence 4444444667777778899999999865 566778888743
No 53
>KOG4603 consensus TBP-1 interacting protein [Signal transduction mechanisms]
Probab=36.62 E-value=2.9e+02 Score=28.96 Aligned_cols=43 Identities=16% Similarity=0.287 Sum_probs=32.3
Q ss_pred chhhHHHHHHHHhhhccCCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 002324 823 GSLLEKTVASLKSKVDGAAIPAPKKADIRAKIALLQNQVRKAQKKVAEENL 873 (936)
Q Consensus 823 ~~~~~~~v~~l~~~l~~~~ip~~~~~~l~~~l~~l~~~~~~~~k~~~~l~~ 873 (936)
.+.+.++|+.|...|. ..++.+.+++|.++.+...+.++.++.
T Consensus 102 ~s~veaEik~L~s~Lt--------~eemQe~i~~L~kev~~~~erl~~~k~ 144 (201)
T KOG4603|consen 102 CSYVEAEIKELSSALT--------TEEMQEEIQELKKEVAGYRERLKNIKA 144 (201)
T ss_pred HHHHHHHHHHHHHhcC--------hHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3567777888877764 678888888888888888877776553
No 54
>cd00776 AsxRS_core Asx tRNA synthetase (AspRS/AsnRS) class II core domain. Assignment to class II aminoacyl-tRNA synthetases (aaRS) based upon its structure and the presence of three characteristic sequence motifs in the core domain. This family includes AsnRS as well as a subgroup of AspRS. AsnRS and AspRS are homodimers, which attach either asparagine or aspartate to the 3'OH group of ribose of the appropriate tRNA. While archaea lack asnRS, they possess a non-discriminating aspRS, which can mischarge Asp-tRNA with Asn. Subsequently, a tRNA-dependent aspartate amidotransferase converts the bound aspartate to asparagine. The catalytic core domain is primarily responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate.
Probab=35.37 E-value=47 Score=37.81 Aligned_cols=101 Identities=23% Similarity=0.373 Sum_probs=62.0
Q ss_pred hhHHHHHHHHhhhcCCCeeecCCCcccCCCCCcceeccccccc------cccccCCCCCC---Ccccccccccccccccc
Q 002324 60 ATKVRDTFFKFFEDKNHVNWKSSPVVPVNDPTLLFANAGMNQY------KPIFLGTADPN---TQLSKLTRACNTQKCIR 130 (936)
Q Consensus 60 ~~eiR~~Fl~fF~~~gH~~v~ssslvp~~DptllFtnAGM~qF------K~~flG~~~p~---~~~~~~~r~~~~QkCiR 130 (936)
-+.|.+.+-+||.++|...|..-.+.+. +. .+|-.+| +|.||-+.+-- .-+..+.|+-...+|.|
T Consensus 27 rs~i~~~ir~~f~~~gf~eV~TP~l~~~-~~-----e~~~~~f~~~~~~~~~yL~~Spql~lk~l~~~~~~vf~i~~~FR 100 (322)
T cd00776 27 RSEVLRAFREFLRENGFTEVHTPKITST-DT-----EGGAELFKVSYFGKPAYLAQSPQLYKEMLIAALERVYEIGPVFR 100 (322)
T ss_pred HHHHHHHHHHHHHHCCCEEeeCCceecC-CC-----CccCCccccccCCCcceecCCHHHHHHHHHHhhhhhEEeccccc
Confidence 3678888999999999999876666552 11 1344555 44455433210 00011468888899999
Q ss_pred cCCCCCCCCCCCCCCCccccccccccc-ccc-cccHHHHHHHHHHHch
Q 002324 131 AGGKHNDLDDVGKDTYHHTFFEMLGNW-SFG-DYFKNEAIEWAWELLT 176 (936)
Q Consensus 131 ~gGKhNDld~VG~t~rHhTfFEMLGnf-SFG-dYfK~eAI~~awe~Lt 176 (936)
.. =..|.||..=|-||.=. +|. || +|.|..+=++|.
T Consensus 101 ~E--------~~~~~rHl~EFtmlE~e~~~~~~~--~dlm~~~e~ll~ 138 (322)
T cd00776 101 AE--------KSNTRRHLSEFWMLEAEMAFIEDY--NEVMDLIEELIK 138 (322)
T ss_pred cC--------CCCcCCCcceeeccceeeeccCCH--HHHHHHHHHHHH
Confidence 73 13467999999998655 444 54 345555554443
No 55
>KOG2783 consensus Phenylalanyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=34.85 E-value=18 Score=41.78 Aligned_cols=26 Identities=35% Similarity=0.520 Sum_probs=18.7
Q ss_pred cccCchHHHHHHHHhCCCCCccccccHHH
Q 002324 290 VDTGLGFERLTSILQNKMSNYDTDVFMPI 318 (936)
Q Consensus 290 IDTGmGLERl~~vlqg~~snydtDlF~pi 318 (936)
.=-||||||||++|=+-| |.-+|...
T Consensus 297 wafglgLerLAMll~~Ip---DiRlfWs~ 322 (436)
T KOG2783|consen 297 WAFGLGLERLAMLLFDIP---DIRLFWSF 322 (436)
T ss_pred eeeeccHHHHHHHHhcCc---chheeecc
Confidence 445999999999997765 33455543
No 56
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=34.73 E-value=1.9e+02 Score=32.89 Aligned_cols=22 Identities=14% Similarity=0.060 Sum_probs=12.7
Q ss_pred CCCHHHHHHHHHHHHhhhhHHHHhhc
Q 002324 902 GLDAAAVREAVLKVIEQKVYQRNQTR 927 (936)
Q Consensus 902 ~~d~~~Lr~~~d~l~~k~~~~~~~~~ 927 (936)
+.+...+..+ +.+...|..+|.
T Consensus 272 ~~t~~Ev~~L----k~~~~~Le~~~g 293 (325)
T PF08317_consen 272 GWTRSEVKRL----KAKVDALEKLTG 293 (325)
T ss_pred CCCHHHHHHH----HHHHHHHHHHHC
Confidence 3455554444 666777777663
No 57
>PF04728 LPP: Lipoprotein leucine-zipper; InterPro: IPR006817 This repeating sequence, NAKVDQLSNDV, is found in the enterobacterial outer membrane lipoprotein LPP. The outer membrane lipoprotein is the most abundant protein in an Escherichia coli cell. The messenger RNA for the lipoprotein of the E. coli outer membrane codes for a putative precursor, prolipoprotein, which has 20 additional amino acid residues extending from the amino terminus of the lipoprotein.; GO: 0019867 outer membrane; PDB: 1JCC_A 2GUV_C 2GUS_A 1JCD_A 1KFM_A 1T8Z_D 1KFN_A 1EQ7_A.
Probab=31.10 E-value=2e+02 Score=24.82 Aligned_cols=27 Identities=15% Similarity=0.259 Sum_probs=16.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002324 849 DIRAKIALLQNQVRKAQKKVAEENLQK 875 (936)
Q Consensus 849 ~l~~~l~~l~~~~~~~~k~~~~l~~~~ 875 (936)
.|..++.+|..++..++.++...+.+.
T Consensus 14 ~L~~kvdqLs~dv~~lr~~v~~ak~EA 40 (56)
T PF04728_consen 14 TLNSKVDQLSSDVNALRADVQAAKEEA 40 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566666666666666666666555443
No 58
>cd00777 AspRS_core Asp tRNA synthetase (aspRS) class II core domain. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs. AspRS is a homodimer, which attaches a specific amino acid to the 3' OH group of ribose of the appropriate tRNA. The catalytic core domain is primarily responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. AspRS in this family differ from those found in the AsxRS family by a GAD insert in the core domain.
Probab=30.22 E-value=27 Score=38.97 Aligned_cols=104 Identities=14% Similarity=0.193 Sum_probs=55.2
Q ss_pred hHHHHHHHHhhhcCCCeeecCCCcccCCCCCc--ceeccccccccc-cccCCCCCCC----cccccccccccccccccCC
Q 002324 61 TKVRDTFFKFFEDKNHVNWKSSPVVPVNDPTL--LFANAGMNQYKP-IFLGTADPNT----QLSKLTRACNTQKCIRAGG 133 (936)
Q Consensus 61 ~eiR~~Fl~fF~~~gH~~v~ssslvp~~Dptl--lFtnAGM~qFK~-~flG~~~p~~----~~~~~~r~~~~QkCiR~gG 133 (936)
+.|-+.+-+||.++|-..|..=-|++...+.. .++..=- ..+. ++|-+.+--+ -.+...|+....+|.|..
T Consensus 5 s~i~~~iR~f~~~~gfiEV~TP~L~~~~~~g~~~f~~~~~~-~~~~~~~L~~Spql~lk~ll~~g~~~v~~i~~~fR~e- 82 (280)
T cd00777 5 SRVIKAIRNFLDEQGFVEIETPILTKSTPEGARDFLVPSRL-HPGKFYALPQSPQLFKQLLMVSGFDRYFQIARCFRDE- 82 (280)
T ss_pred HHHHHHHHHHHHHCCCEEEeCCeeecCCCCCCCCceecccc-CCCceeecccCHHHHHHHHHhcCcCcEEEeccceeCC-
Confidence 46777888999999999885444443222221 1111100 0011 1122211000 001246788889999972
Q ss_pred CCCCCCCCCCCCCccccccccccc-ccccccHHHHHHHHHHHch
Q 002324 134 KHNDLDDVGKDTYHHTFFEMLGNW-SFGDYFKNEAIEWAWELLT 176 (936)
Q Consensus 134 KhNDld~VG~t~rHhTfFEMLGnf-SFGdYfK~eAI~~awe~Lt 176 (936)
+.+ +.||. =|-||+-. +|.|| ++.+...=+++.
T Consensus 83 ------~~~-~~r~~-Ef~~~e~e~~~~~~--~dlm~~~e~li~ 116 (280)
T cd00777 83 ------DLR-ADRQP-EFTQIDIEMSFVDQ--EDIMSLIEGLLK 116 (280)
T ss_pred ------CCC-CCccc-eeEEeEeeeccCCH--HHHHHHHHHHHH
Confidence 344 55665 78888654 77776 455555555544
No 59
>PF05008 V-SNARE: Vesicle transport v-SNARE protein N-terminus; InterPro: IPR007705 V-SNARE proteins are required for protein traffic between eukaryotic organelles. The v-SNAREs on transport vesicles interact with t-SNAREs on target membranes in order to facilitate this []. This domain is the N-terminal half of the V-Snare proteins. ; GO: 0006886 intracellular protein transport, 0016020 membrane; PDB: 2V8S_V 1VCS_A 3ONL_C 3ONJ_A 2QYW_A.
Probab=29.29 E-value=1.8e+02 Score=25.70 Aligned_cols=38 Identities=13% Similarity=0.423 Sum_probs=23.0
Q ss_pred HHHHHhhhccCCCCCCChhhHHHHHHHHHHHHHHHHHHHH
Q 002324 830 VASLKSKVDGAAIPAPKKADIRAKIALLQNQVRKAQKKVA 869 (936)
Q Consensus 830 v~~l~~~l~~~~ip~~~~~~l~~~l~~l~~~~~~~~k~~~ 869 (936)
|+.+.-++.. +|...+..+..+|...+.+++.++++++
T Consensus 41 l~qMe~E~~~--~p~s~r~~~~~kl~~yr~~l~~lk~~l~ 78 (79)
T PF05008_consen 41 LKQMELEVRS--LPPSERNQYKSKLRSYRSELKKLKKELK 78 (79)
T ss_dssp HHHHHHHHCT--S-HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHh--CCHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4444444442 3666677777777777777777766654
No 60
>PTZ00401 aspartyl-tRNA synthetase; Provisional
Probab=28.97 E-value=98 Score=38.01 Aligned_cols=99 Identities=18% Similarity=0.299 Sum_probs=60.4
Q ss_pred HHHHHHHHhhhcCCCeeecCCCcccCCCCCcceeccccccc------cccccCCCCCCC----ccccccccccccccccc
Q 002324 62 KVRDTFFKFFEDKNHVNWKSSPVVPVNDPTLLFANAGMNQY------KPIFLGTADPNT----QLSKLTRACNTQKCIRA 131 (936)
Q Consensus 62 eiR~~Fl~fF~~~gH~~v~ssslvp~~DptllFtnAGM~qF------K~~flG~~~p~~----~~~~~~r~~~~QkCiR~ 131 (936)
.|-+.|-+||.++|...|..-.|+... +..|-+.| ++++|-+.+--+ -.+.+.|+-...+|.|+
T Consensus 218 ~i~~~~R~fl~~~gFiEV~TP~L~~~~------~egga~~F~v~yf~~~~~L~qSpql~kq~li~~g~~rVfeI~p~FRa 291 (550)
T PTZ00401 218 RVCQYFRQFLIDSDFCEIHSPKIINAP------SEGGANVFKLEYFNRFAYLAQSPQLYKQMVLQGDVPRVFEVGPVFRS 291 (550)
T ss_pred HHHHHHHHHHHHCCCEEEeCCccccCC------CCccccccccccCCCCeecCCCHHHHHHHHHhcCCCCEEEEeCeEeC
Confidence 566788899999999988655454311 12233344 334443322100 00135788888999997
Q ss_pred CCCCCCCCCCCCCCCcccccccccc-cccc-cccHHHHHHHHHHHch
Q 002324 132 GGKHNDLDDVGKDTYHHTFFEMLGN-WSFG-DYFKNEAIEWAWELLT 176 (936)
Q Consensus 132 gGKhNDld~VG~t~rHhTfFEMLGn-fSFG-dYfK~eAI~~awe~Lt 176 (936)
. +. .|.||.+=|-||-- ++|+ ||. |.+..+=+++.
T Consensus 292 E-------~s-~T~RHl~EFt~Le~E~~~~~~y~--evm~~~e~l~~ 328 (550)
T PTZ00401 292 E-------NS-NTHRHLTEFVGLDVEMRINEHYY--EVLDLAESLFN 328 (550)
T ss_pred C-------CC-CCCCCccchhhhhhhhHhcCCHH--HHHHHHHHHHH
Confidence 3 33 47899999999977 7886 563 45554444443
No 61
>PF06698 DUF1192: Protein of unknown function (DUF1192); InterPro: IPR009579 This family consists of several short, hypothetical, bacterial proteins of around 60 residues in length. The function of this family is unknown.
Probab=28.67 E-value=1.6e+02 Score=25.61 Aligned_cols=31 Identities=16% Similarity=0.409 Sum_probs=24.2
Q ss_pred CCCCChhhHHHHHHHHHHHHHHHHHHHHHHH
Q 002324 842 IPAPKKADIRAKIALLQNQVRKAQKKVAEEN 872 (936)
Q Consensus 842 ip~~~~~~l~~~l~~l~~~~~~~~k~~~~l~ 872 (936)
++..+.++|.++|..|+.++..++.++.+-.
T Consensus 18 Ls~lSv~EL~~RIa~L~aEI~R~~~~~~~K~ 48 (59)
T PF06698_consen 18 LSLLSVEELEERIALLEAEIARLEAAIAKKS 48 (59)
T ss_pred chhcCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456788999999999999888887776533
No 62
>PLN02853 Probable phenylalanyl-tRNA synthetase alpha chain
Probab=27.58 E-value=51 Score=39.73 Aligned_cols=33 Identities=21% Similarity=0.176 Sum_probs=24.3
Q ss_pred CCcCcCCChhHHHHHHHHhhhcCCCeeecCCCc
Q 002324 52 DPQVVEWPATKVRDTFFKFFEDKNHVNWKSSPV 84 (936)
Q Consensus 52 ~~~~~~~~~~eiR~~Fl~fF~~~gH~~v~sssl 84 (936)
......=...++|+.+-++|.+-|.+.++..|.
T Consensus 215 ~~~G~~HPl~~~~~ei~~if~~mGF~e~~~g~~ 247 (492)
T PLN02853 215 PEGGHLHPLLKVRQQFRKIFLQMGFEEMPTNNF 247 (492)
T ss_pred CCCCCCCHHHHHHHHHHHHHHhCCCEEecCCCC
Confidence 333344457889999999999999999964443
No 63
>PRK10884 SH3 domain-containing protein; Provisional
Probab=26.95 E-value=4e+02 Score=28.63 Aligned_cols=23 Identities=39% Similarity=0.432 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 002324 850 IRAKIALLQNQVRKAQKKVAEEN 872 (936)
Q Consensus 850 l~~~l~~l~~~~~~~~k~~~~l~ 872 (936)
|.++.++|++++..+++++..++
T Consensus 137 L~~~n~~L~~~l~~~~~~~~~l~ 159 (206)
T PRK10884 137 LKEENQKLKNQLIVAQKKVDAAN 159 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333444444444444433333
No 64
>PF04420 CHD5: CHD5-like protein; InterPro: IPR007514 Members of this family are probably coiled-coil proteins that are similar to the CHD5 (Congenital heart disease 5) protein. The exact molecular function of these eukaryotic proteins is unknown.; PDB: 3SJA_H 3SJC_D 3SJB_D 3ZS8_D 3VLC_E.
Probab=26.86 E-value=1.2e+02 Score=31.10 Aligned_cols=48 Identities=23% Similarity=0.275 Sum_probs=26.4
Q ss_pred hHHHHHHHHhhhccCCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002324 826 LEKTVASLKSKVDGAAIPAPKKADIRAKIALLQNQVRKAQKKVAEENLQKAVK 878 (936)
Q Consensus 826 ~~~~v~~l~~~l~~~~ip~~~~~~l~~~l~~l~~~~~~~~k~~~~l~~~~a~~ 878 (936)
+.+++.++++|++.. +..+=-.+-.++++++.++++|+++++++....
T Consensus 45 l~~Ei~~l~~E~~~i-----S~qDeFAkwaKl~Rk~~kl~~el~~~~~~~~~~ 92 (161)
T PF04420_consen 45 LRKEILQLKRELNAI-----SAQDEFAKWAKLNRKLDKLEEELEKLNKSLSSE 92 (161)
T ss_dssp HHHHHHHHHHHHTTS------TTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHcC-----CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555666666522 122224555666777777777777666655443
No 65
>cd00776 AsxRS_core Asx tRNA synthetase (AspRS/AsnRS) class II core domain. Assignment to class II aminoacyl-tRNA synthetases (aaRS) based upon its structure and the presence of three characteristic sequence motifs in the core domain. This family includes AsnRS as well as a subgroup of AspRS. AsnRS and AspRS are homodimers, which attach either asparagine or aspartate to the 3'OH group of ribose of the appropriate tRNA. While archaea lack asnRS, they possess a non-discriminating aspRS, which can mischarge Asp-tRNA with Asn. Subsequently, a tRNA-dependent aspartate amidotransferase converts the bound aspartate to asparagine. The catalytic core domain is primarily responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate.
Probab=26.37 E-value=35 Score=38.84 Aligned_cols=28 Identities=32% Similarity=0.366 Sum_probs=23.6
Q ss_pred CccccCchHHHHHHHHhCCCCCcccccc
Q 002324 288 KHVDTGLGFERLTSILQNKMSNYDTDVF 315 (936)
Q Consensus 288 ~~IDTGmGLERl~~vlqg~~snydtDlF 315 (936)
++==-|||+|||++.+-|..+.=|+=+|
T Consensus 290 p~~G~giGidRL~m~~~g~~~Irdv~~F 317 (322)
T cd00776 290 PHGGFGLGLERLVMWLLGLDNIREAILF 317 (322)
T ss_pred CCceeeEhHHHHHHHHcCCCchheEeec
Confidence 5777899999999999999988776444
No 66
>COG2024 Phenylalanyl-tRNA synthetase alpha subunit (archaeal type) [Translation, ribosomal structure and biogenesis]
Probab=26.29 E-value=53 Score=38.11 Aligned_cols=58 Identities=26% Similarity=0.328 Sum_probs=38.0
Q ss_pred cCceeeEeecCCCCCCCCCCCCCCCCeeEEeeecccccccCCCCcccc-------CCCCccccCchHHHHHHHHhCCC
Q 002324 237 GPCSEIHYDRTGNRDAASLVNNDDPTCIEIWNIVFIQFNRESDGSLKP-------LPAKHVDTGLGFERLTSILQNKM 307 (936)
Q Consensus 237 GPCsEI~yD~~~~~~~~~~~~~~~~~~lEiWNlVFmq~~r~~~g~l~~-------Lp~~~IDTGmGLERl~~vlqg~~ 307 (936)
|--||+|=-|..- .++ ...-.|-|+||... |-++| +|.++..-|.|.||||+||.|.+
T Consensus 279 ~TQTEVyAyHPkL-~gs--~~kysdgWiEiATF----------GlYSP~ALaeY~Id~pVMNLGlGVERlaMIl~g~~ 343 (536)
T COG2024 279 GTQTEVYAYHPKL-VGS--IEKYSDGWIEIATF----------GLYSPIALAEYGIDYPVMNLGLGVERLAMILHGAD 343 (536)
T ss_pred CccceEEEecccc-ccc--ccccCCCcEEEEee----------cccChHHHHHcCCCCceeecchhHHHHHHHHhCch
Confidence 4468988444210 001 12345789999842 44555 56777778999999999999854
No 67
>TIGR00462 genX lysyl-tRNA synthetase-like protein GenX. Many Gram-negative bacteria have a protein closely homologous to the C-terminal region of lysyl-tRNA synthetase (LysS). Multiple sequence alignment of these proteins with the homologous regions of collected LysS proteins shows that these proteins form a distinct set rather than just similar truncations of LysS. The protein is termed GenX after its designation in E. coli. Interestingly, genX often is located near a homolog of lysine-2,3-aminomutase. Its function is unknown.
Probab=25.42 E-value=37 Score=38.33 Aligned_cols=104 Identities=16% Similarity=0.305 Sum_probs=63.8
Q ss_pred hHHHHHHHHhhhcCCCeeecCCCcccCCCCCcceeccccccc-----------cccccCCCCCCC----ccccccccccc
Q 002324 61 TKVRDTFFKFFEDKNHVNWKSSPVVPVNDPTLLFANAGMNQY-----------KPIFLGTADPNT----QLSKLTRACNT 125 (936)
Q Consensus 61 ~eiR~~Fl~fF~~~gH~~v~ssslvp~~DptllFtnAGM~qF-----------K~~flG~~~p~~----~~~~~~r~~~~ 125 (936)
+.|-+.+-+||.++|-.-|..--+.+.. -+.+|-.+| ++.+|-+.+--+ -.+.+.|+-..
T Consensus 5 s~i~~~ir~~f~~~gF~EV~TP~l~~~~-----~~e~~~~~F~~~y~~~~~~~~~~yL~~Spql~lk~ll~~g~~rVfei 79 (304)
T TIGR00462 5 ARLLAAIRAFFAERGVLEVETPLLSPAP-----VTDPHLDAFATEFLGPDGEGRPLYLQTSPEYAMKRLLAAGSGPIFQI 79 (304)
T ss_pred HHHHHHHHHHHHHCCCEEEECCeEecCC-----CCCcCCcceeeeccCCCCCCcceeeecCHHHHHHHHHhccCCCEEEE
Confidence 4677888899999999988665565421 112233334 334443322100 00125788888
Q ss_pred ccccccCCCCCCCCCCCCCCCccccccccccc-ccccccHHHHHHHHHHHchhccC
Q 002324 126 QKCIRAGGKHNDLDDVGKDTYHHTFFEMLGNW-SFGDYFKNEAIEWAWELLTKVYR 180 (936)
Q Consensus 126 QkCiR~gGKhNDld~VG~t~rHhTfFEMLGnf-SFGdYfK~eAI~~awe~Lt~~l~ 180 (936)
-+|.|+. ++ +.||.+=|-||=-. +|.|| ++.+...=+++..++.
T Consensus 80 gp~FRaE-------~~--~~rHl~EFtmLE~e~~~~d~--~d~m~~~e~li~~i~~ 124 (304)
T TIGR00462 80 CKVFRNG-------ER--GRRHNPEFTMLEWYRPGFDY--HDLMDEVEALLQELLG 124 (304)
T ss_pred cCceeCC-------CC--CCCcccHHHhHHHHHHcCCH--HHHHHHHHHHHHHHHH
Confidence 9999984 33 46999999998433 55565 4577777666665543
No 68
>PF10224 DUF2205: Predicted coiled-coil protein (DUF2205); InterPro: IPR019357 This entry represents a highly conserved 100 residue region which is likely to have a coiled-coil structure. The exact function is unknown.
Probab=25.11 E-value=2.2e+02 Score=26.28 Aligned_cols=40 Identities=8% Similarity=0.155 Sum_probs=30.2
Q ss_pred hhhHHHHHHHHhhhccCCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 002324 824 SLLEKTVASLKSKVDGAAIPAPKKADIRAKIALLQNQVRKAQKKVAEENL 873 (936)
Q Consensus 824 ~~~~~~v~~l~~~l~~~~ip~~~~~~l~~~l~~l~~~~~~~~k~~~~l~~ 873 (936)
+++.+.+..|++.|. .|.+|++..+++..+++.+.+-|..
T Consensus 19 ~~Li~ei~~LQ~sL~----------~L~~Rve~Vk~E~~kL~~EN~~Lq~ 58 (80)
T PF10224_consen 19 EELIQEILELQDSLE----------ALSDRVEEVKEENEKLESENEYLQQ 58 (80)
T ss_pred HHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456667777888765 7888888888888888887775553
No 69
>cd00777 AspRS_core Asp tRNA synthetase (aspRS) class II core domain. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs. AspRS is a homodimer, which attaches a specific amino acid to the 3' OH group of ribose of the appropriate tRNA. The catalytic core domain is primarily responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. AspRS in this family differ from those found in the AsxRS family by a GAD insert in the core domain.
Probab=24.55 E-value=1.4e+02 Score=33.44 Aligned_cols=28 Identities=32% Similarity=0.425 Sum_probs=23.7
Q ss_pred CccccCchHHHHHHHHhCCCCCcccccc
Q 002324 288 KHVDTGLGFERLTSILQNKMSNYDTDVF 315 (936)
Q Consensus 288 ~~IDTGmGLERl~~vlqg~~snydtDlF 315 (936)
+|==-|||+|||++++-|..|.=|+-+|
T Consensus 248 P~~G~giGidRL~m~~~g~~~Irdv~~F 275 (280)
T cd00777 248 PHGGIALGLDRLVMLLTGSESIRDVIAF 275 (280)
T ss_pred CCCeEeEhHHHHHHHHcCCCchheEeec
Confidence 6777899999999999999988776444
No 70
>PRK14063 exodeoxyribonuclease VII small subunit; Provisional
Probab=23.96 E-value=61 Score=29.37 Aligned_cols=32 Identities=6% Similarity=0.187 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHHHhhcCCCCChhhhhheecc
Q 002324 437 TLLKGIEKFKKAAQDVQGKVLSGQDAFILWDT 468 (936)
Q Consensus 437 tl~~g~~~l~~~~~~~~~~~l~g~~af~LydT 468 (936)
|.+.++..|+++++++.++.+|.++++.+|..
T Consensus 6 sfEeal~~LE~Iv~~LE~~~l~Leesl~lyee 37 (76)
T PRK14063 6 SFEEAISQLEHLVSKLEQGDVPLEEAISYFKE 37 (76)
T ss_pred CHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHH
Confidence 45677888999999998889999999999854
No 71
>PLN02850 aspartate-tRNA ligase
Probab=23.91 E-value=1.3e+02 Score=36.79 Aligned_cols=98 Identities=19% Similarity=0.253 Sum_probs=58.9
Q ss_pred hHHHHHHHHhhhcCCCeeecCCCcccCC-CCCcceeccccccc------cccccCCCCCCC----ccccccccccccccc
Q 002324 61 TKVRDTFFKFFEDKNHVNWKSSPVVPVN-DPTLLFANAGMNQY------KPIFLGTADPNT----QLSKLTRACNTQKCI 129 (936)
Q Consensus 61 ~eiR~~Fl~fF~~~gH~~v~ssslvp~~-DptllFtnAGM~qF------K~~flG~~~p~~----~~~~~~r~~~~QkCi 129 (936)
+.|-+.|-+||.++|...|..--|++.. ++ |-.+| ++++|-+.+--+ -.+.+.|+-..-+|.
T Consensus 229 s~i~~~~R~fl~~~gF~EV~TP~L~~~~~eg-------ga~~F~v~yf~~~~~L~qSpql~kq~li~~g~~rVfeIgp~F 301 (530)
T PLN02850 229 SQVCNLFREFLLSKGFVEIHTPKLIAGASEG-------GSAVFRLDYKGQPACLAQSPQLHKQMAICGDFRRVFEIGPVF 301 (530)
T ss_pred HHHHHHHHHHHHHCCcEEEeCCccccCCCcc-------ccceeeeccCCcceecCCCHHHHHHHHHHhcCCceEEEeccc
Confidence 3566778899999999888654443321 11 22233 445554432100 012357888899999
Q ss_pred ccCCCCCCCCCCCCCCCccccccccccc-ccc-cccHHHHHHHHHHHc
Q 002324 130 RAGGKHNDLDDVGKDTYHHTFFEMLGNW-SFG-DYFKNEAIEWAWELL 175 (936)
Q Consensus 130 R~gGKhNDld~VG~t~rHhTfFEMLGnf-SFG-dYfK~eAI~~awe~L 175 (936)
|+. + ..|.||.+=|-||--. +|+ || +|.+...=+++
T Consensus 302 RaE-------~-s~t~RHl~EFt~Le~Em~~~~~y--~evm~~~E~ll 339 (530)
T PLN02850 302 RAE-------D-SFTHRHLCEFTGLDLEMEIKEHY--SEVLDVVDELF 339 (530)
T ss_pred ccC-------C-CCCCccchhhccchhhhhhhcCH--HHHHHHHHHHH
Confidence 973 2 2678999999999655 787 35 34444444433
No 72
>PF15372 DUF4600: Domain of unknown function (DUF4600)
Probab=23.58 E-value=2e+02 Score=28.81 Aligned_cols=76 Identities=12% Similarity=0.160 Sum_probs=51.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCccEEEEEccCCCCHHHHHHHHHHHHhhhhHHHHhhcc
Q 002324 849 DIRAKIALLQNQVRKAQKKVAEENLQKAVKVATETAEAAASNGKPFCISRVEVGLDAAAVREAVLKVIEQKVYQRNQTRA 928 (936)
Q Consensus 849 ~l~~~l~~l~~~~~~~~k~~~~l~~~~a~~~~~~l~~~~~~~~~~~~v~~~~~~~d~~~Lr~~~d~l~~k~~~~~~~~~~ 928 (936)
+...+-+...+-+..++|++.-++.++..... . ......-|..++ .+..+.|..++..|-+-..+|.+|-|.
T Consensus 5 EWktRYEtQ~E~N~QLekqi~~l~~kiek~r~-----n--~~drl~siR~ye-~Ms~~~l~~llkqLEkeK~~Le~qlk~ 76 (129)
T PF15372_consen 5 EWKTRYETQLELNDQLEKQIIILREKIEKIRG-----N--PSDRLSSIRRYE-QMSVESLNQLLKQLEKEKRSLENQLKD 76 (129)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-----C--CccccHHHHHHh-hccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55566677777777788888777666432211 0 011111233344 678899999999999999999999998
Q ss_pred cccc
Q 002324 929 NSWR 932 (936)
Q Consensus 929 ~~~~ 932 (936)
-.||
T Consensus 77 ~e~r 80 (129)
T PF15372_consen 77 YEWR 80 (129)
T ss_pred HHHH
Confidence 8887
No 73
>PF01361 Tautomerase: Tautomerase enzyme; InterPro: IPR004370 4-Oxalocrotonate tautomerase (4-OT) catalyzes the isomerisation of beta,gamma-unsaturated enones to their alpha,beta-isomers. The enzyme is part of a plasmid-encoded pathway, which enables bacteria harbouring the plasmid to use various aromatic hydrocarbons as their sole sources of carbon and energy. The enzyme is a barrel-shaped hexamer, which can be viewed as a trimer of dimers. The hexamer contains a hydrophobic core formed by three beta-sheets and surrounded by three pairs of alpha-helices. Each 4-OT monomer of 62 amino acids has a relatively simple beta-alpha-beta fold as described by the structure of the enzyme from Pseudomonas putida []. The monomer begins with a conserved proline at the start of a beta-strand, followed by an alpha-helix and a 310 helix preceding a second parallel beta-strand, and ends with a beta-hairpin near the C terminus. The dimer results from antiparallel interactions between the beta-sheets and alpha-helices of the two monomers, forming a four-stranded beta-sheet with antiparallel alpha-helices on one side, creating two active sites, one at each end of the beta-sheet. Three dimers further associate to form a hexamer by the interactions of the strands of the C-terminal beta-hairpin loops with the edges of the four-stranded beta-sheets of neighbouring dimers, creating a series of cross-links that stabilise the hexamer Pro-1 of the mature protein functions as the general base while Arg-39 and an ordered water molecule each provide a hydrogen bond to the C-2 oxygen of substrate. Arg-39 plays an additional role in the binding of the C-1 carboxylate group. Arg-11 participates both in substrate binding and in catalysis. It interacts with the C-6 carboxylate group, thereby holding the substrate in place and drawing electron density to the C-5 position. The hydrophobic nature of the active site, which lowers the pKa of Pro-1 and provides a favourable environment for catalysis, is largely maintained by Phe-50. Because several Arg residues located near the active site are not conserved among all members of this family and because of the presence of fairly distantly related paralogs in Campylobacter jejuni, the family is regarded as not necessarily uniform in function.; GO: 0016853 isomerase activity, 0006725 cellular aromatic compound metabolic process; PDB: 4OTA_H 4OTC_G 4OTB_J 2FM7_A 1BJP_B 1S0Y_K 3EJ9_E 3EJ7_K 3EJ3_I 3MB2_A ....
Probab=23.34 E-value=64 Score=26.97 Aligned_cols=29 Identities=21% Similarity=0.248 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHchhccCCCCCceEEEEEC
Q 002324 164 KNEAIEWAWELLTKVYRLPADRLYATYFG 192 (936)
Q Consensus 164 K~eAI~~awe~Lt~~l~l~~~rL~vTv~~ 192 (936)
|++-++=.-+.+.+++|+|++++||.+.+
T Consensus 16 K~~l~~~it~~~~~~lg~~~~~i~V~i~E 44 (60)
T PF01361_consen 16 KRELAEAITDAVVEVLGIPPERISVVIEE 44 (60)
T ss_dssp HHHHHHHHHHHHHHHHTS-GGGEEEEEEE
T ss_pred HHHHHHHHHHHHHHHhCcCCCeEEEEEEE
Confidence 55556666777888999999999998865
No 74
>KOG1159 consensus NADP-dependent flavoprotein reductase [Energy production and conversion]
Probab=22.74 E-value=42 Score=40.22 Aligned_cols=109 Identities=21% Similarity=0.282 Sum_probs=66.9
Q ss_pred hhhhcCcceeeeEecccchh---hhhccccc--cccccCCCCcCcCCChhHHHHHHHHhhhcCCCeeecCCCccc-CCCC
Q 002324 17 ARVLLNPSLTLAVTNHHHSL---ISRFSASA--VAAMPGADPQVVEWPATKVRDTFFKFFEDKNHVNWKSSPVVP-VNDP 90 (936)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~---~~~~~~~~--~~~~~~~~~~~~~~~~~eiR~~Fl~fF~~~gH~~v~ssslvp-~~Dp 90 (936)
+|++-|--+|-+ -|-- .-+|+-+. -.=.||.+-+..+++.+|--+.|+++- |-......+|.| .+|+
T Consensus 199 ~k~~~N~rlT~~----~HfQDVR~~~F~i~~s~~~~epGDvl~l~P~N~de~V~~Fie~~---gl~~~~~~~l~~~s~~~ 271 (574)
T KOG1159|consen 199 AKLVENRRLTSA----DHFQDVRLFEFDIPDSYEEFEPGDVLSLLPSNSDETVQRFIEYL---GLDEDQLKPLKISSNDR 271 (574)
T ss_pred cchhcceeecCc----chhheeeEEEEecCCccccccCCCEEEEecCCchHHHHHHHHHc---CCChhhccccccccCcc
Confidence 667777665533 2211 11344333 455688877888899999999999886 555555555555 2232
Q ss_pred CcceeccccccccccccCCCCCCCcccccccccccccccccCCCCCCCCCCCCCCCccccccccccccccc
Q 002324 91 TLLFANAGMNQYKPIFLGTADPNTQLSKLTRACNTQKCIRAGGKHNDLDDVGKDTYHHTFFEMLGNWSFGD 161 (936)
Q Consensus 91 tllFtnAGM~qFK~~flG~~~p~~~~~~~~r~~~~QkCiR~gGKhNDld~VG~t~rHhTfFEMLGnfSFGd 161 (936)
+.++| + +.+-++.--|+-- |=|+-.|- |.+|||||+.||-..
T Consensus 272 ---------~~~~~---~----------~~~p~sl~~~lk~---~~D~~SvP----rrsFFe~l~~~s~~~ 313 (574)
T KOG1159|consen 272 ---------SSPLP---L----------LPNPLSLLNLLKY---VLDFNSVP----RRSFFEMLAHFSTDE 313 (574)
T ss_pred ---------ccccc---c----------cCCchhHHHHHHH---hcccccCc----chHHHHHHHHHccCh
Confidence 23444 1 1222444455554 46888765 669999999999873
No 75
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=22.52 E-value=2.7e+02 Score=26.87 Aligned_cols=29 Identities=3% Similarity=0.046 Sum_probs=20.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002324 849 DIRAKIALLQNQVRKAQKKVAEENLQKAV 877 (936)
Q Consensus 849 ~l~~~l~~l~~~~~~~~k~~~~l~~~~a~ 877 (936)
+|...+..|.+++..++-+...|+..+..
T Consensus 26 ~LK~~~~~l~EEN~~L~~EN~~Lr~~l~~ 54 (107)
T PF06156_consen 26 ELKKQLQELLEENARLRIENEHLRERLEE 54 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66777777777777777777777766543
No 76
>TIGR01834 PHA_synth_III_E poly(R)-hydroxyalkanoic acid synthase, class III, PhaE subunit. This model represents the PhaE subunit of the heterodimeric class (class III) of polymerase for poly(R)-hydroxyalkanoic acids (PHAs), carbon and energy storage polymers of many bacteria. The most common PHA is polyhydroxybutyrate but about 150 different constituent hydroxyalkanoic acids (HAs) have been identified in various species. This model must be designated subfamily to indicate the heterogeneity of PHAs.
Probab=22.50 E-value=2.2e+02 Score=32.64 Aligned_cols=27 Identities=15% Similarity=0.330 Sum_probs=17.3
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 002324 847 KADIRAKIALLQNQVRKAQKKVAEENL 873 (936)
Q Consensus 847 ~~~l~~~l~~l~~~~~~~~k~~~~l~~ 873 (936)
-+++-++|.+|+++++.++|++..++.
T Consensus 291 lDe~~krL~ELrR~vr~L~k~l~~l~~ 317 (320)
T TIGR01834 291 LDEAHQRIQQLRREVKSLKKRLGDLEA 317 (320)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 445666777777777777776665543
No 77
>PRK14064 exodeoxyribonuclease VII small subunit; Provisional
Probab=22.46 E-value=68 Score=29.00 Aligned_cols=32 Identities=13% Similarity=0.258 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHHHhhcCCCCChhhhhheecc
Q 002324 437 TLLKGIEKFKKAAQDVQGKVLSGQDAFILWDT 468 (936)
Q Consensus 437 tl~~g~~~l~~~~~~~~~~~l~g~~af~LydT 468 (936)
|.+.++..|+++++++.++.+|.++++.+|..
T Consensus 7 sfEe~l~~LE~IV~~LE~~~l~Leesl~~ye~ 38 (75)
T PRK14064 7 TFEEAIAELETIVEALENGSASLEDSLDMYQK 38 (75)
T ss_pred CHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHH
Confidence 56778888999999998889999999999854
No 78
>PF00152 tRNA-synt_2: tRNA synthetases class II (D, K and N) ; InterPro: IPR004364 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry includes the asparagine, aspartic acid and lysine tRNA synthetases.; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 1N9W_B 1BBU_A 1BBW_A 4EX5_B 3E9I_A 3E9H_C 3A74_C 1NNH_A 3M4P_C 3M4Q_B ....
Probab=22.36 E-value=48 Score=37.66 Aligned_cols=106 Identities=18% Similarity=0.321 Sum_probs=55.9
Q ss_pred hHHHHHHHHhhhcCCCeeecCCCcccCCCCC--cceeccc--cccc-cccccCCCCCCC---cc-ccccccccccccccc
Q 002324 61 TKVRDTFFKFFEDKNHVNWKSSPVVPVNDPT--LLFANAG--MNQY-KPIFLGTADPNT---QL-SKLTRACNTQKCIRA 131 (936)
Q Consensus 61 ~eiR~~Fl~fF~~~gH~~v~ssslvp~~Dpt--llFtnAG--M~qF-K~~flG~~~p~~---~~-~~~~r~~~~QkCiR~ 131 (936)
+.|-+.+-+||.++|...|..--+++...+. =.|.--. ..-| +|+||-+.+--+ -+ +.+.|+-...+|.|.
T Consensus 26 s~i~~~ir~ff~~~~f~Ev~tP~l~~~~~~~~~~~F~v~~~~~~~~~~~~~L~~Spql~~k~ll~~g~~~vf~i~~~FR~ 105 (335)
T PF00152_consen 26 SAILQAIREFFDKRGFIEVDTPILTSSTCEGGAEPFSVDSEPGKYFGEPAYLTQSPQLYLKRLLAAGLERVFEIGPCFRN 105 (335)
T ss_dssp HHHHHHHHHHHHHTT-EEE---SEESSSSSSSSCSEEEEESTTEETTEEEEE-SSSHHHHHHHHHTTHSEEEEEEEEE-B
T ss_pred HHHHHHHHHHHHhCCceEEcCceeeccccCccccccccccchhhhcccceecCcChHHHHhhhccccchhhhheecceec
Confidence 4677788899999999999765566543332 2333220 0011 344454332100 00 114567777999997
Q ss_pred CCCCCCCCCCCCCCCccccccccc-ccccccccHHHHHHHHHHHch
Q 002324 132 GGKHNDLDDVGKDTYHHTFFEMLG-NWSFGDYFKNEAIEWAWELLT 176 (936)
Q Consensus 132 gGKhNDld~VG~t~rHhTfFEMLG-nfSFGdYfK~eAI~~awe~Lt 176 (936)
. +. .|.||..=|-||= -.+|.||.. .|..+=+++.
T Consensus 106 E-------~~-~~~rHl~EFtmLE~e~a~~~~~~--lm~~~e~li~ 141 (335)
T PF00152_consen 106 E-------ES-RTRRHLPEFTMLEWEMAFADYDD--LMDLIEELIK 141 (335)
T ss_dssp S-------SS-CBTTBSSEEEEEEEEEETSSHHH--HHHHHHHHHH
T ss_pred c-------Cc-ccccchhhhhhhhhccccCcHHH--hHHHHHHHHH
Confidence 3 12 5899998888873 345667644 5554444443
No 79
>PRK14066 exodeoxyribonuclease VII small subunit; Provisional
Probab=22.19 E-value=69 Score=28.99 Aligned_cols=31 Identities=16% Similarity=0.368 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHHhhcCCCCChhhhhheecc
Q 002324 438 LLKGIEKFKKAAQDVQGKVLSGQDAFILWDT 468 (936)
Q Consensus 438 l~~g~~~l~~~~~~~~~~~l~g~~af~LydT 468 (936)
.+.+++.|+++++++.++.+|.+++++||..
T Consensus 6 fEeal~~LE~IV~~LE~g~l~Leesl~lyee 36 (75)
T PRK14066 6 FETALKKLEEVVKKLEGGELSLDDSLKAFEE 36 (75)
T ss_pred HHHHHHHHHHHHHHHHCCCCCHHHHHHHHHH
Confidence 4567788889999998889999999999854
No 80
>COG0104 PurA Adenylosuccinate synthase [Nucleotide transport and metabolism]
Probab=22.15 E-value=1.9e+02 Score=34.31 Aligned_cols=167 Identities=15% Similarity=0.239 Sum_probs=88.6
Q ss_pred CCCCccccCCCCccccCchHHHHHHHHhCCCCCccccccHHHHHHHHHHhCCCCCCCCCCCCccccccchhhhhhhhhhh
Q 002324 277 ESDGSLKPLPAKHVDTGLGFERLTSILQNKMSNYDTDVFMPIFDAIQQATGARPYSGKVGADDADKVDMAYRVVADHIRT 356 (936)
Q Consensus 277 ~~~g~l~~Lp~~~IDTGmGLERl~~vlqg~~snydtDlF~pii~~i~~~~~~~~y~g~~~~~~~~~~d~a~rvIaDH~R~ 356 (936)
-+.|-+.|=..-.|-.|| .-|.+.|..=++.+++. |...-..++..++..++-+.|.+-.|.+|-
T Consensus 55 iPSGil~~~~~~vIGnGv--------------VvdP~~L~~Ei~~L~~~-g~~~~~~rL~Is~~ahlIlpyH~~lD~~~E 119 (430)
T COG0104 55 IPSGILRPGATLVIGNGV--------------VVDPEVLLKEIEELEER-GVDVVRDRLRISDRAHLILPYHIELDRARE 119 (430)
T ss_pred ccccccCCCceEEEcCcE--------------EECHHHHHHHHHHHHhc-CCccccccEEEccCcccccHHHHHHhhhhh
Confidence 366666655555666665 22444444444444431 221101122223334445567777777776
Q ss_pred hhe---ee---cCCCccCCCCCchHHHHHHHHHHHHHHhhhCCCc--cchhhHHHHHHHHhCCCChhhHhcHHHHHHHHH
Q 002324 357 LSF---AI---ADGSCPGNEGREYVLRRILRRAVRYGSEVLKAQD--GFFNGLVNIVVKVMGDVFPELKQREAHIREIIA 428 (936)
Q Consensus 357 ~~f---~i---aDG~~PsN~GrGYvLRrilRRa~r~~~~~lg~~~--~fl~~lv~~v~~~m~~~ypel~~~~~~I~~vi~ 428 (936)
..- .| .=|+=|.++. |+.||++|.+ .++.-+. .+|..+++..-..+...|-.-....+.|.+-+.
T Consensus 120 ~~~~~~kIGTTgrGIGPaY~D------Kv~R~giRv~-DL~d~~~l~~kle~~~~~~n~~l~~~y~~~~~~~~~~~~~~~ 192 (430)
T COG0104 120 KALGKKKIGTTGRGIGPAYED------KVARRGIRVG-DLLDPETLREKLERLLEYKNFQLVKYYGAEAVDFEDILDEYY 192 (430)
T ss_pred hhcCCCcccCCCCccChhhhh------hHhhhhhhhh-hhcCHHHHHHHHHHHHHHHHHHHHHhcCcccccHHHHHHHHH
Confidence 110 11 1255555554 5999999998 5554331 134444443333444444433334566666666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcCCCCChhhhhhe
Q 002324 429 AEEASFGKTLLKGIEKFKKAAQDVQGKVLSGQDAFIL 465 (936)
Q Consensus 429 ~Ee~~F~~tl~~g~~~l~~~~~~~~~~~l~g~~af~L 465 (936)
.--+++..-+.....++++.+++-+.=.+-|...+.|
T Consensus 193 ~~~~~l~~~v~D~~~~l~~a~~~g~~VLfEGAQG~lL 229 (430)
T COG0104 193 EYAERLKPYVTDVSVLLNDALDAGKRVLFEGAQGTLL 229 (430)
T ss_pred HHHHhhcchhhhhHHHHHHHHHcCCeEEEEcCcccee
Confidence 7777777777777778888776543224556665555
No 81
>PRK14067 exodeoxyribonuclease VII small subunit; Provisional
Probab=21.93 E-value=69 Score=29.36 Aligned_cols=32 Identities=9% Similarity=0.306 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHHHhhcCCCCChhhhhheecc
Q 002324 437 TLLKGIEKFKKAAQDVQGKVLSGQDAFILWDT 468 (936)
Q Consensus 437 tl~~g~~~l~~~~~~~~~~~l~g~~af~LydT 468 (936)
|.+.+++.|+++++++.++.+|.+++++||..
T Consensus 8 sfEeal~~LEeIV~~LE~~~l~Lees~~lyee 39 (80)
T PRK14067 8 DFEQQLARLQEIVDALEGGDLPLEESVALYKE 39 (80)
T ss_pred CHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHH
Confidence 56678888999999998889999999999854
No 82
>PRK12295 hisZ ATP phosphoribosyltransferase regulatory subunit; Provisional
Probab=21.87 E-value=1.7e+02 Score=34.09 Aligned_cols=118 Identities=14% Similarity=0.091 Sum_probs=71.1
Q ss_pred cCcCCChhHHHHHHHHhhhcCCCeeecCCCcccCCCCCc----ceeccccccccccccCCC---CC-----------CCc
Q 002324 54 QVVEWPATKVRDTFFKFFEDKNHVNWKSSPVVPVNDPTL----LFANAGMNQYKPIFLGTA---DP-----------NTQ 115 (936)
Q Consensus 54 ~~~~~~~~eiR~~Fl~fF~~~gH~~v~ssslvp~~Dptl----lFtnAGM~qFK~~flG~~---~p-----------~~~ 115 (936)
||+-+...+|++++.+-|+++|...|....+-|. |.-. -.+..-|..|.+- .|.. .| .+.
T Consensus 1 ~~~~~~~~~i~~~i~~~f~~~Gy~~I~tP~lE~~-e~~~~~~g~~~~~~~~~f~D~-~G~~l~LRpD~T~piaR~~~~~~ 78 (373)
T PRK12295 1 MMPLSASAAAAEALLASFEAAGAVRVDPPILQPA-EPFLDLSGEDIRRRIFVTSDE-NGEELCLRPDFTIPVCRRHIATA 78 (373)
T ss_pred CCcchhHHHHHHHHHHHHHHcCCEEeeCCccccH-HHhhhccCchhhcceEEEECC-CCCEEeeCCCCcHHHHHHHHHcC
Confidence 4555668899999999999999999965555452 2000 0012224444331 1211 00 000
Q ss_pred ccccccccccccccccCCCCCCCCCCCCCCCcccccccccccccccccHHHHHHHHHHHchhccCCC
Q 002324 116 LSKLTRACNTQKCIRAGGKHNDLDDVGKDTYHHTFFEMLGNWSFGDYFKNEAIEWAWELLTKVYRLP 182 (936)
Q Consensus 116 ~~~~~r~~~~QkCiR~gGKhNDld~VG~t~rHhTfFEMLGnfSFGdYfK~eAI~~awe~Lt~~l~l~ 182 (936)
.....|.+-+++|.|. + .-...-.|++-||.+|.-+-= +--.|.|..|++.|. .+|++
T Consensus 79 ~~~p~R~~Y~g~VfR~-----~--~gr~rEf~Q~GvEiiG~~~~~-~aDaEvi~l~~~~L~-~lgl~ 136 (373)
T PRK12295 79 GGEPARYAYLGEVFRQ-----R--RDRASEFLQAGIESFGRADPA-AADAEVLALALEALA-ALGPG 136 (373)
T ss_pred CCCCeEEEEEccEEEC-----C--CCCCCcceEeeEEeeCCCCCc-cchHHHHHHHHHHHH-HcCCC
Confidence 1112477888999996 3 223345668889999965411 235799999999886 46876
No 83
>PF11382 DUF3186: Protein of unknown function (DUF3186); InterPro: IPR021522 This bacterial family of proteins has no known function.
Probab=21.50 E-value=5.7e+02 Score=29.08 Aligned_cols=66 Identities=15% Similarity=0.201 Sum_probs=31.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCccEEEEEccCCCCHHHHHHHHHHHHh
Q 002324 849 DIRAKIALLQNQVRKAQKKVAEENLQKAVKVATETAEAAASNGKPFCISRVEVGLDAAAVREAVLKVIE 917 (936)
Q Consensus 849 ~l~~~l~~l~~~~~~~~k~~~~l~~~~a~~~~~~l~~~~~~~~~~~~v~~~~~~~d~~~Lr~~~d~l~~ 917 (936)
+|+++.++|+.++.++++++.... +.+...+..++.. .-.|.++++..++ +.+......+.+.|+.
T Consensus 43 ~lr~e~~~l~~~~~~~~~~~~~~d-~f~~~~~~~lv~g-~L~g~~V~vV~~p-~a~~~~~~~v~~~L~~ 108 (308)
T PF11382_consen 43 SLREENDELRAELDALQAQLNAAD-QFIAAVAPRLVAG-RLTGRSVAVVTLP-GADDEDVDAVRELLEQ 108 (308)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhcC-ccCCCEEEEEEcC-CCChHHHHHHHHHHHH
Confidence 444445555555555554444322 1222222222221 1157777777765 4565555555555543
No 84
>TIGR01280 xseB exodeoxyribonuclease VII, small subunit. This protein is the small subunit for exodeoxyribonuclease VII. Exodeoxyribonuclease VII is made of a complex of four small subunits to one large subunit. The complex degrades single-stranded DNA into large acid-insoluble oligonucleotides. These nucleotides are then degraded further into acid-soluble oligonucleotides.
Probab=21.45 E-value=75 Score=28.05 Aligned_cols=31 Identities=13% Similarity=0.313 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHHhhcCCCCChhhhhheecc
Q 002324 438 LLKGIEKFKKAAQDVQGKVLSGQDAFILWDT 468 (936)
Q Consensus 438 l~~g~~~l~~~~~~~~~~~l~g~~af~LydT 468 (936)
.+.+++.|+++++++.++.+|.++++.+|.-
T Consensus 3 fEe~l~~Le~Iv~~LE~~~l~Leesl~lyee 33 (67)
T TIGR01280 3 FEEALSELEQIVQKLESGDLALEEALNLFER 33 (67)
T ss_pred HHHHHHHHHHHHHHHHCCCCCHHHHHHHHHH
Confidence 4567888999999998889999999998753
No 85
>PLN02850 aspartate-tRNA ligase
Probab=21.26 E-value=46 Score=40.57 Aligned_cols=29 Identities=24% Similarity=0.351 Sum_probs=23.9
Q ss_pred CccccCchHHHHHHHHhCCCCCccccccH
Q 002324 288 KHVDTGLGFERLTSILQNKMSNYDTDVFM 316 (936)
Q Consensus 288 ~~IDTGmGLERl~~vlqg~~snydtDlF~ 316 (936)
+|==-|||||||++.+-|.++.=|+-+|.
T Consensus 494 PhgG~GiGlERLvM~l~g~~nIr~v~~FP 522 (530)
T PLN02850 494 PHGGFGVGLERVVMLFCGLNNIRKTSLFP 522 (530)
T ss_pred CCceEEEcHHHHHHHHcCCCchheEeecC
Confidence 45577999999999999999987775553
No 86
>TIGR00457 asnS asparaginyl-tRNA synthetase. In a multiple sequence alignment of representative asparaginyl-tRNA synthetases (asnS), archaeal/eukaryotic type aspartyl-tRNA synthetases (aspS_arch), and bacterial type aspartyl-tRNA synthetases (aspS_bact), there is a striking similarity between asnS and aspS_arch in gap pattern and in sequence, and a striking divergence of aspS_bact. Consequently, a separate model was built for each of the three groups. This model, asnS, represents asparaginyl-tRNA synthetases from the three domains of life. Some species lack this enzyme and charge tRNA(asn) by misacylation with Asp, followed by transamidation of Asp to Asn.
Probab=20.84 E-value=50 Score=39.50 Aligned_cols=28 Identities=36% Similarity=0.477 Sum_probs=22.2
Q ss_pred CccccCchHHHHHHHHhCCCCCcccccc
Q 002324 288 KHVDTGLGFERLTSILQNKMSNYDTDVF 315 (936)
Q Consensus 288 ~~IDTGmGLERl~~vlqg~~snydtDlF 315 (936)
++==-|||+|||++.+-|.++.=|.-+|
T Consensus 417 PhgG~GiGieRlvm~l~g~~~Irdv~~F 444 (453)
T TIGR00457 417 PHSGFGLGFERLLAYITGLENIRDAIPF 444 (453)
T ss_pred CCCcEeehHHHHHHHHhCCCcHhhhccC
Confidence 5566799999999999998877665444
No 87
>cd06008 NF-X1-zinc-finger Presumably a zinc binding domain, which has been shown to bind to DNA in the human nuclear transcriptional repressor NF-X1. The zinc finger can be characterized by the pattern C-X(1-6)-H-X-C-X3-C(H/C)-X(3-4)-(H/C)-X(1-10)-C. The NF-X1 zinc finger co-occurs with atypical RING-finger and R3H domains. Human NF-X1 is involved in the transcriptional repression of major histocompatibility complex class II genes. The drosophila homolog encoded by stc (shuttle craft) plays a role in embryonic development, and the Arabidopsis homologue AtNFXL1 has been shown to function in the response to trichothecene and other defense mechanisms.
Probab=20.79 E-value=39 Score=27.82 Aligned_cols=11 Identities=55% Similarity=1.346 Sum_probs=9.3
Q ss_pred CCCCcCceeeE
Q 002324 233 TGPCGPCSEIH 243 (936)
Q Consensus 233 ~GPCGPCsEI~ 243 (936)
.|||+||+|+-
T Consensus 22 ~G~C~pC~~~~ 32 (49)
T cd06008 22 EGPCPPCPETV 32 (49)
T ss_pred CCcCcCcCCcc
Confidence 69999998764
No 88
>PRK01964 4-oxalocrotonate tautomerase; Provisional
Probab=20.78 E-value=1.1e+02 Score=26.12 Aligned_cols=30 Identities=13% Similarity=0.099 Sum_probs=25.0
Q ss_pred cHHHHHHHHHHHchhccCCCCCceEEEEEC
Q 002324 163 FKNEAIEWAWELLTKVYRLPADRLYATYFG 192 (936)
Q Consensus 163 fK~eAI~~awe~Lt~~l~l~~~rL~vTv~~ 192 (936)
.|++-++-.-+.|.+.||+|++.++|.+-+
T Consensus 16 qk~~l~~~it~~l~~~lg~p~~~v~V~i~e 45 (64)
T PRK01964 16 KIKNLIREVTEAISATLDVPKERVRVIVNE 45 (64)
T ss_pred HHHHHHHHHHHHHHHHhCcChhhEEEEEEE
Confidence 466677777788889999999999998865
No 89
>PRK00977 exodeoxyribonuclease VII small subunit; Provisional
Probab=20.63 E-value=76 Score=28.99 Aligned_cols=32 Identities=3% Similarity=0.224 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHHHhhcCCCCChhhhhheecc
Q 002324 437 TLLKGIEKFKKAAQDVQGKVLSGQDAFILWDT 468 (936)
Q Consensus 437 tl~~g~~~l~~~~~~~~~~~l~g~~af~LydT 468 (936)
|.+.+++.|+++++++.++.+|.++++.||.-
T Consensus 11 sfEea~~~LEeIv~~LE~~~l~Lees~~lyee 42 (80)
T PRK00977 11 SFEEALAELEEIVTRLESGDLPLEESLAAFER 42 (80)
T ss_pred CHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHH
Confidence 45667888899999998889999999999854
No 90
>TIGR00013 taut 4-oxalocrotonate tautomerase family enzyme. 4-oxalocrotonate tautomerase is a homohexamer in which each monomer is very small, at about 62 amino acids. Pro-1 of the mature protein serves as a general base. The enzyme functions in meta-cleavage pathways of aromatic hydrocarbon catabolism. Because several Arg residues located near the active site in the crystal structure of Pseudomonas putida are not conserved among all members of this family, because the literature describes a general role in the isomerization of beta,gamma-unsaturated enones to their alpha,beta-isomers, and because of the presence of fairly distantly related paralogs in Campylobacter jejuni, the family is regarded as not necessarily uniform in function.
Probab=20.56 E-value=1.2e+02 Score=25.43 Aligned_cols=30 Identities=13% Similarity=0.025 Sum_probs=24.8
Q ss_pred cHHHHHHHHHHHchhccCCCCCceEEEEEC
Q 002324 163 FKNEAIEWAWELLTKVYRLPADRLYATYFG 192 (936)
Q Consensus 163 fK~eAI~~awe~Lt~~l~l~~~rL~vTv~~ 192 (936)
-|++-++-.-+.|.+.+|.|++.++|.+.+
T Consensus 16 qK~~l~~~it~~l~~~lg~~~~~v~V~i~e 45 (63)
T TIGR00013 16 QKRQLIEGVTEAMAETLGANLESIVVIIDE 45 (63)
T ss_pred HHHHHHHHHHHHHHHHhCCCcccEEEEEEE
Confidence 366666777788889999999999999865
No 91
>PTZ00425 asparagine-tRNA ligase; Provisional
Probab=20.56 E-value=50 Score=40.75 Aligned_cols=29 Identities=38% Similarity=0.465 Sum_probs=24.4
Q ss_pred CccccCchHHHHHHHHhCCCCCccccccH
Q 002324 288 KHVDTGLGFERLTSILQNKMSNYDTDVFM 316 (936)
Q Consensus 288 ~~IDTGmGLERl~~vlqg~~snydtDlF~ 316 (936)
+|==-|||||||++.|-|.++.=|+=+|.
T Consensus 550 PhgGfGLGiERLvm~ltGl~nIRDvi~FP 578 (586)
T PTZ00425 550 PHAGFGLGFERLIMLVTGVDNIKDTIPFP 578 (586)
T ss_pred CCceEEEcHHHHHHHHcCCCchheEEECc
Confidence 67778999999999999999988775543
No 92
>PF01343 Peptidase_S49: Peptidase family S49 peptidase classification.; InterPro: IPR002142 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to MEROPS peptidase family S49 (protease IV family, clan S-). The predicted active site serine for members of this family occurs in a transmembrane domain. The domain defines sequences in viruses, archaea, bacteria and plants. These sequences are variously annotated in the different taxonomic groups, examples are: Viruses: capsid protein Archaea: proteinase IV homolog Bacteria: proteinase IV, sohB, SppA, pfaP, putative protease Plants: SppA, protease IV This group also contains proteins classified as non-peptidase homologues that either have been found experimentally to be without peptidase activity, or lack amino acid residues that are believed to be essential for the catalytic activity of peptidases. Related proteins, non-peptidase homologs and unclassified S49 members are also to be found in IPR002810 from INTERPRO.; GO: 0008233 peptidase activity, 0006508 proteolysis; PDB: 3RST_B 3BEZ_D 3BF0_A.
Probab=20.52 E-value=1.2e+02 Score=30.55 Aligned_cols=68 Identities=18% Similarity=0.271 Sum_probs=52.1
Q ss_pred hcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-cCCCCChhhhhh--eeccCCCChhhHHHHHHHcCc
Q 002324 418 QREAHIREIIAAEEASFGKTLLKGIEKFKKAAQDV-QGKVLSGQDAFI--LWDTYGFPLDLTQLMAEERGL 485 (936)
Q Consensus 418 ~~~~~I~~vi~~Ee~~F~~tl~~g~~~l~~~~~~~-~~~~l~g~~af~--LydTyGfP~dlt~~~a~e~g~ 485 (936)
+.++.+++.+..-...|...+.++..+=.+.+++. ....++|++|.+ |-|..|..-|+...++++.|+
T Consensus 83 ~~r~~~~~~l~~~~~~f~~~Va~~R~~~~~~v~~~~~~~~~~~~~A~~~GLiD~i~~~~~~~~~l~~~~~v 153 (154)
T PF01343_consen 83 EERENLQELLDELYDQFVNDVAEGRGLSPDDVEEIADGGVFTAQQALELGLIDEIGTFDEAIARLAKLAGV 153 (154)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTS-HHHHHCHHCCHEEEHHHHHHTTSSSEETSHHHHHHHHHHHCHS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHhhccccHHHHHHcCchhhcCCHHHHHHHHHHHcCC
Confidence 35678999999999999999999986544444433 335788888874 789999888888888887765
No 93
>TIGR00443 hisZ_biosyn_reg ATP phosphoribosyltransferase, regulatory subunit. Apparant second copies of histidyl-tRNA synthetase, found in Bacillus subtilis, Synechocystis sp., Aquifex aeolicus, and others, are in fact a regulatory subunit of ATP phosphoribosyltransferase, and usually encoded by a gene adjacent to that encoding the catalytic subunit.
Probab=20.34 E-value=2.5e+02 Score=31.68 Aligned_cols=117 Identities=15% Similarity=0.193 Sum_probs=72.1
Q ss_pred hhHHHHHHHHhhhcCCCeeecCCCcccCCCCCcc-----eeccccccccccccCCC---CCC-----------C--cccc
Q 002324 60 ATKVRDTFFKFFEDKNHVNWKSSPVVPVNDPTLL-----FANAGMNQYKPIFLGTA---DPN-----------T--QLSK 118 (936)
Q Consensus 60 ~~eiR~~Fl~fF~~~gH~~v~ssslvp~~Dptll-----FtnAGM~qFK~~flG~~---~p~-----------~--~~~~ 118 (936)
-.+|++.+.+.|+++|...|.+..+-|. + ++ ..+..|..|.+-= |.. .|. + ....
T Consensus 11 ~~~i~~~l~~~~~~~Gy~~i~tP~le~~-~--~~~~~~~~~~~~~~~~~d~~-g~~l~LRpD~T~~iaR~~~~~~~~~~~ 86 (314)
T TIGR00443 11 KEEIERQLQDVFRSWGYQEIITPTLEYL-D--TLSAGGGILNEDLFKLFDSL-GRVLGLRPDMTTPIARAVSTRLRDRPL 86 (314)
T ss_pred HHHHHHHHHHHHHHcCCeeccCcchhhH-H--HhcccCCcchhceEEEECCC-CCEEeecCcCcHHHHHHHHHhcccCCC
Confidence 5689999999999999999966444441 1 11 1234455554421 221 010 0 0001
Q ss_pred cccccccccccccCCCCCCCCCCCC-CCCcccccccccccccccccHHHHHHHHHHHchhccCCCCCceEEEE
Q 002324 119 LTRACNTQKCIRAGGKHNDLDDVGK-DTYHHTFFEMLGNWSFGDYFKNEAIEWAWELLTKVYRLPADRLYATY 190 (936)
Q Consensus 119 ~~r~~~~QkCiR~gGKhNDld~VG~-t~rHhTfFEMLGnfSFGdYfK~eAI~~awe~Lt~~l~l~~~rL~vTv 190 (936)
-.|.+-+.+|.|.. =..-|+ -..+.+-||.+|.=|.- --.|.|..|++.|.+ +|+. .+.+.+
T Consensus 87 p~r~~y~g~VfR~~-----~~~~gr~re~~Q~g~Eiig~~~~~--adaEvi~l~~~~l~~-lg~~--~~~i~l 149 (314)
T TIGR00443 87 PLRLCYAGNVFRTN-----ESGAGRSREFTQAGVELIGAGGPA--ADAEVIALLIEALKA-LGLK--DFKIEL 149 (314)
T ss_pred CeEEEEeceEeecC-----CCcCCCcccccccceEEeCCCCch--hHHHHHHHHHHHHHH-cCCC--CeEEEe
Confidence 24778889999963 222333 34568889999976663 347999999999975 6774 444443
No 94
>PRK06462 asparagine synthetase A; Reviewed
Probab=20.27 E-value=53 Score=37.63 Aligned_cols=107 Identities=17% Similarity=0.178 Sum_probs=56.1
Q ss_pred hHHHHHHHHhhhcCCCeeecCCCcccCCCCCcce-eccccccc------cccccCCCCCC---Ccccccccccccccccc
Q 002324 61 TKVRDTFFKFFEDKNHVNWKSSPVVPVNDPTLLF-ANAGMNQY------KPIFLGTADPN---TQLSKLTRACNTQKCIR 130 (936)
Q Consensus 61 ~eiR~~Fl~fF~~~gH~~v~ssslvp~~DptllF-tnAGM~qF------K~~flG~~~p~---~~~~~~~r~~~~QkCiR 130 (936)
++|-+.+-+||.++|-..|..=-+++..||-+-- .+-|...| ++++|-+.+-- --.+.+.|+-...+|.|
T Consensus 34 s~i~~~iR~ff~~~~f~EV~TP~l~~~~~~~~~~g~~~~~~~~~~~~~~~~~yL~~Spql~k~ll~~g~~rVfeI~p~FR 113 (335)
T PRK06462 34 SSILRYTREFLDGRGFVEVLPPIISPSTDPLMGLGSDLPVKQISIDFYGVEYYLADSMILHKQLALRMLGKIFYLSPNFR 113 (335)
T ss_pred HHHHHHHHHHHHHCCCEEEeCCeEecCCCCCCCccccCCccccccccCCCceeeccCHHHHHHHHHhhcCcEEEEecccc
Confidence 5677788899999999888443343433331100 00011111 22233221100 00012467888899999
Q ss_pred cCCCCCCCCCCCC-CCCccccccccccc-ccccccHHHHHHHHHHHch
Q 002324 131 AGGKHNDLDDVGK-DTYHHTFFEMLGNW-SFGDYFKNEAIEWAWELLT 176 (936)
Q Consensus 131 ~gGKhNDld~VG~-t~rHhTfFEMLGnf-SFGdYfK~eAI~~awe~Lt 176 (936)
+. .++. +.||..=|-||-=. .|.|| +|.+...=+++.
T Consensus 114 ~E-------~~~~~~~rHl~EFtmlE~e~~~~d~--~dlm~~~e~lv~ 152 (335)
T PRK06462 114 LE-------PVDKDTGRHLYEFTQLDIEIEGADL--DEVMDLIEDLIK 152 (335)
T ss_pred CC-------CCCCCCCCCCCchheeeehhhcCCH--HHHHHHHHHHHH
Confidence 74 3442 26999888888554 55565 344444444443
No 95
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=20.20 E-value=6.8e+02 Score=25.56 Aligned_cols=27 Identities=15% Similarity=0.395 Sum_probs=18.9
Q ss_pred ChhhHHHHHHHHHHHHHHHHHHHHHHH
Q 002324 846 KKADIRAKIALLQNQVRKAQKKVAEEN 872 (936)
Q Consensus 846 ~~~~l~~~l~~l~~~~~~~~k~~~~l~ 872 (936)
+.++|...+++|.+++..++.+++.++
T Consensus 110 t~~el~~~i~~l~~e~~~l~~kL~~l~ 136 (169)
T PF07106_consen 110 TNEELREEIEELEEEIEELEEKLEKLR 136 (169)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466777777777777777776666544
No 96
>cd00775 LysRS_core Lys_tRNA synthetase (LysRS) class II core domain. Class II LysRS is a dimer which attaches a lysine to the 3' OH group of ribose of the appropriate tRNA. Its assignment to class II aaRS is based upon its structure and the presence of three characteristic sequence motifs in the core domain. It is found in eukaryotes as well as some prokaryotes and archaea. However, LysRS belongs to class I aaRS's in some prokaryotes and archaea. The catalytic core domain is primarily responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate.
Probab=20.16 E-value=51 Score=37.61 Aligned_cols=23 Identities=35% Similarity=0.598 Sum_probs=0.0
Q ss_pred CchHHHHHHHHhCCCCCcccccc
Q 002324 293 GLGFERLTSILQNKMSNYDTDVF 315 (936)
Q Consensus 293 GmGLERl~~vlqg~~snydtDlF 315 (936)
|+|||||++.+-|.++.=|+-.|
T Consensus 302 glGleRL~m~~~g~~~Irdv~~F 324 (329)
T cd00775 302 GIGIDRLVMLLTDSNSIRDVILF 324 (329)
T ss_pred EecHHHHHHHHcCCCcHHhcccC
Done!