Query 002324
Match_columns 936
No_of_seqs 378 out of 2231
Neff 5.7
Searched_HMMs 29240
Date Mon Mar 25 21:45:19 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002324.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/002324hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2zze_A Alanyl-tRNA synthetase; 100.0 5E-201 2E-205 1773.6 46.3 634 55-799 54-752 (752)
2 2ztg_A Alanyl-tRNA synthetase; 100.0 4E-188 1E-192 1662.5 44.5 622 56-800 58-739 (739)
3 3hy0_A Alanyl-tRNA synthetase; 100.0 3E-179 1E-183 1485.3 28.4 424 58-506 2-438 (441)
4 1yfs_A Alanyl-tRNA synthetase; 100.0 6E-179 2E-183 1491.1 25.3 423 58-508 3-430 (465)
5 3kew_A DHHA1 domain protein; s 100.0 5E-54 1.7E-58 457.1 22.7 224 540-804 11-234 (241)
6 2e1b_A PH0108, 216AA long hypo 100.0 4.4E-49 1.5E-53 413.0 16.4 200 540-796 13-214 (216)
7 1tke_A Threonyl-tRNA synthetas 99.9 3.5E-26 1.2E-30 240.5 16.7 169 606-799 40-224 (224)
8 1v4p_A Alanyl-tRNA synthetase; 99.9 6.6E-26 2.3E-30 225.6 17.2 143 641-799 5-152 (157)
9 1nyr_A Threonyl-tRNA synthetas 99.9 3.3E-23 1.1E-27 248.4 15.0 147 638-802 68-226 (645)
10 1qf6_A THRRS, threonyl-tRNA sy 99.9 2.3E-22 8E-27 240.8 16.5 145 638-800 66-225 (642)
11 2zvf_A Alanyl-tRNA synthetase; 98.5 3.9E-07 1.3E-11 91.4 11.7 96 797-918 1-97 (171)
12 3rf1_A Glycyl-tRNA synthetase 95.2 0.06 2E-06 57.2 9.5 178 55-312 22-201 (311)
13 1j5w_A Glycyl-tRNA synthetase 83.6 0.38 1.3E-05 50.9 1.8 175 58-312 13-189 (298)
14 4dh4_A MIF; trimer, isomerase; 65.6 3.3 0.00011 38.0 2.9 30 163-192 72-101 (114)
15 2dq3_A Seryl-tRNA synthetase; 61.0 13 0.00043 42.4 7.1 110 60-182 175-316 (425)
16 3fwu_A Macrophage migration in 60.1 5.2 0.00018 38.2 3.2 30 163-192 93-122 (133)
17 3djh_A Macrophage migration in 59.4 5.1 0.00017 36.9 2.9 30 163-192 71-100 (114)
18 3b64_A Macrophage migration in 58.3 6 0.00021 36.1 3.2 31 162-192 71-101 (112)
19 3kan_A D-dopachrome tautomeras 58.0 5.5 0.00019 37.0 2.9 29 164-192 73-101 (117)
20 3g98_A Alanyl-tRNA synthetase; 57.8 6 0.0002 36.5 3.0 31 889-920 6-36 (111)
21 3fwt_A Macrophage migration in 55.4 6.3 0.00022 37.6 2.9 30 163-192 93-122 (133)
22 3hnw_A Uncharacterized protein 54.0 74 0.0025 30.6 10.1 26 850-875 101-126 (138)
23 3t5s_A Gilaa.00834.A, macropha 53.1 6.7 0.00023 37.5 2.6 29 164-192 94-122 (135)
24 2wkb_A Macrophage migration in 52.7 8.3 0.00028 36.0 3.2 31 162-192 71-101 (125)
25 2xcz_A Possible ATLS1-like lig 52.0 8 0.00027 35.4 2.9 30 163-192 72-101 (115)
26 1hfo_A Migration inhibitory fa 51.7 8.1 0.00028 35.1 2.9 30 163-192 71-100 (113)
27 1uiz_A MIF, macrophage migrati 50.1 8.9 0.0003 35.0 2.9 30 163-192 72-101 (115)
28 2os5_A Acemif; macrophage migr 50.1 8.8 0.0003 35.4 2.9 30 163-192 72-101 (119)
29 3ghg_A Fibrinogen alpha chain; 46.8 28 0.00095 40.3 6.7 41 825-875 114-154 (562)
30 1otf_A 4-oxalocrotonate tautom 42.0 15 0.00051 29.3 2.7 30 163-192 15-44 (62)
31 2opa_A Probable tautomerase YW 41.9 15 0.00051 29.2 2.7 30 163-192 15-44 (61)
32 1gyx_A YDCE, B1461, hypothetic 41.8 31 0.0011 29.2 4.8 43 163-212 16-58 (76)
33 3n4h_A Putative tautomerase; C 41.5 14 0.00048 35.4 2.9 54 163-216 77-135 (148)
34 1nnh_A Asparaginyl-tRNA synthe 40.2 11 0.00038 40.6 2.1 108 61-179 19-141 (294)
35 3abf_A 4-oxalocrotonate tautom 39.7 20 0.00067 28.8 3.1 29 164-192 17-45 (64)
36 1vcs_A Vesicle transport throu 38.1 1.6E+02 0.0053 26.7 9.2 32 841-872 63-94 (102)
37 3m20_A 4-oxalocrotonate tautom 38.1 29 0.00098 28.1 3.9 30 163-192 14-43 (62)
38 4dzn_A Coiled-coil peptide CC- 34.8 60 0.002 23.0 4.3 24 854-877 4-27 (33)
39 3m21_A Probable tautomerase HP 33.7 28 0.00095 28.6 3.1 29 164-192 19-47 (67)
40 2l5g_B Putative uncharacterize 33.2 1E+02 0.0036 23.8 5.8 30 846-875 3-32 (42)
41 1kd8_B GABH BLL, GCN4 acid bas 33.1 76 0.0026 23.7 4.8 28 849-876 5-32 (36)
42 3twe_A Alpha4H; unknown functi 32.4 56 0.0019 22.2 3.7 22 848-869 4-25 (27)
43 1mww_A Hypothetical protein HI 30.8 27 0.00092 32.4 2.9 30 163-192 74-103 (128)
44 1eov_A ASPRS, aspartyl-tRNA sy 29.4 46 0.0016 38.5 5.0 99 62-176 183-293 (487)
45 1kd8_A GABH AIV, GCN4 acid bas 28.4 1E+02 0.0035 23.0 4.8 28 849-876 5-32 (36)
46 2aal_A Malonate semialdehyde d 28.0 32 0.0011 32.1 2.9 29 164-192 81-109 (131)
47 4gyx_A Type III collagen fragm 27.3 22 0.00074 24.9 1.1 10 231-240 19-28 (31)
48 3mb2_A 4-oxalocrotonate tautom 27.1 38 0.0013 28.3 2.9 30 163-192 16-45 (72)
49 2oxj_A Hybrid alpha/beta pepti 26.7 96 0.0033 22.9 4.4 25 849-873 5-29 (34)
50 2yy0_A C-MYC-binding protein; 26.4 65 0.0022 26.1 4.0 20 849-868 30-49 (53)
51 2x4k_A 4-oxalocrotonate tautom 26.2 39 0.0013 26.6 2.7 29 164-192 19-47 (63)
52 3m48_A General control protein 26.1 87 0.003 23.0 4.1 25 849-873 4-28 (33)
53 3a5y_A GENX, putative lysyl-tR 24.6 27 0.00092 38.6 1.9 104 61-180 40-160 (345)
54 2oqq_A Transcription factor HY 24.6 1.4E+02 0.0049 23.0 5.2 18 849-866 21-38 (42)
55 1jcd_A Major outer membrane li 23.9 2.1E+02 0.007 23.2 6.4 26 849-874 15-40 (52)
56 3hnw_A Uncharacterized protein 23.3 4.8E+02 0.017 24.9 10.2 29 849-877 72-100 (138)
57 1yke_B RNA polymerase II holoe 23.0 2.4E+02 0.0082 27.5 8.1 43 831-873 71-113 (151)
58 1ykh_B RNA polymerase II holoe 22.9 2.7E+02 0.0091 26.5 8.2 42 832-873 72-113 (132)
59 1wyd_A Hypothetical aspartyl-t 22.3 32 0.0011 39.2 1.9 102 61-177 138-248 (429)
60 3mq7_A Bone marrow stromal ant 22.1 3.3E+02 0.011 25.5 8.3 17 853-869 72-88 (121)
61 3nem_A Aspartyl-tRNA synthetas 21.9 32 0.0011 39.3 1.9 102 62-175 142-258 (438)
62 1eh2_A EPS15; calcium binding, 21.6 1.1E+02 0.0038 27.5 5.2 47 453-499 27-77 (106)
63 1n9w_A Aspartyl-tRNA synthetas 21.3 34 0.0012 38.8 1.9 103 61-178 129-241 (422)
64 3bju_A Lysyl-tRNA synthetase; 21.0 34 0.0012 39.9 1.9 100 62-176 181-298 (521)
65 3a5y_A GENX, putative lysyl-tR 21.0 1.1E+02 0.0038 33.7 5.9 28 288-315 313-340 (345)
66 3m4p_A Ehasnrs, asparaginyl-tR 21.0 34 0.0012 39.2 1.9 89 62-162 161-257 (456)
67 4etp_A Kinesin-like protein KA 21.0 1.8E+02 0.0063 32.5 7.8 10 890-899 59-68 (403)
68 3ry0_A Putative tautomerase; o 20.6 57 0.0019 26.4 2.7 30 163-192 15-44 (65)
69 3i7f_A Aspartyl-tRNA synthetas 20.3 36 0.0012 40.0 1.9 88 61-162 248-347 (548)
70 3efg_A Protein SLYX homolog; x 20.1 2.5E+02 0.0086 24.3 6.7 46 820-875 6-51 (78)
71 1e1o_A Lysyl-tRNA synthetase, 20.1 37 0.0013 39.5 1.9 98 62-176 188-298 (504)
72 3a74_A Lysyl-tRNA synthetase; 20.0 37 0.0013 39.3 1.9 105 61-177 178-290 (493)
No 1
>2zze_A Alanyl-tRNA synthetase; ligase, hydrolase; HET: MLY; 2.16A {Pyrococcus horikoshii} PDB: 2zzf_A 2zzg_A*
Probab=100.00 E-value=4.7e-201 Score=1773.57 Aligned_cols=634 Identities=28% Similarity=0.449 Sum_probs=577.1
Q ss_pred CcCCChhHHHHHHHHhhhcCC---CeeecCCCcccCCCCCcceecccccccccccc-CCCCCCCcccccccccccccccc
Q 002324 55 VVEWPATKVRDTFFKFFEDKN---HVNWKSSPVVPVNDPTLLFANAGMNQYKPIFL-GTADPNTQLSKLTRACNTQKCIR 130 (936)
Q Consensus 55 ~~~~~~~eiR~~Fl~fF~~~g---H~~v~ssslvp~~DptllFtnAGM~qFK~~fl-G~~~p~~~~~~~~r~~~~QkCiR 130 (936)
.++||++|||++||+||++|| |++||||||||+|||||||||||||||||||+ |+++|| ++|+||||||||
T Consensus 54 ~~~~~~~eiR~~fl~fF~~kg~~~H~~v~s~~lvp~~dptllftnAGm~~fk~~f~~G~~~pp-----~~r~~~~QkCiR 128 (752)
T 2zze_A 54 PRXYTLDEMREXFLRFFEXHEIYPHGRVXRYPVLPRWRDDVLLVGASIMDFQPWVISGEADPP-----ANPLVISQPSIR 128 (752)
T ss_dssp SSCCCHHHHHHHHHHHHHTCSSSCCEECCCCCSSCTTCSSCSSCCSGGGGGTTHHHHTSSCCS-----SSSEEEEEEEEC
T ss_pred cccCCHHHHHHHHHHHHhccCCCcceEEeccCcccCCCCCeeeeecchhhhhHhhcCCCcCCC-----CCCcccccccee
Confidence 367999999999999999999 99999999999999999999999999999997 999987 479999999999
Q ss_pred cCCCCCCCCCCCCCCCcccccccccccccc-----cccHHHHHHHHHHHchhccCCCCCceEEEEECCCCcCCCCCcHHH
Q 002324 131 AGGKHNDLDDVGKDTYHHTFFEMLGNWSFG-----DYFKNEAIEWAWELLTKVYRLPADRLYATYFGGDEKAGLAPDNEA 205 (936)
Q Consensus 131 ~gGKhNDld~VG~t~rHhTfFEMLGnfSFG-----dYfK~eAI~~awe~Lt~~l~l~~~rL~vTv~~~d~~~~~~~D~Ea 205 (936)
+ |||||||+|+||||||||||||||| ||||+|||+|||||||++||||++||+ +
T Consensus 129 ~----~DlenVG~t~rHhTfFEMlGnfSFg~~~~~dYfK~eaI~~awe~lT~~~gl~~~ri~--~--------------- 187 (752)
T 2zze_A 129 F----TDIDNVGITGRHFTIFEMMAHHAFNYPGXPIYWMDETVELAFEFFTKELXMXPEDIT--F--------------- 187 (752)
T ss_dssp C----TTGGGTTTSSSCCSEEEEEEEEEEECTTCCCCCHHHHHHHHHHHHHHTSCCCGGGEE--E---------------
T ss_pred c----CcHhhcCCCCcchhHHHhCccceeCCCchHHHHHHHHHHHHHHHHhhhhhcchhhee--e---------------
Confidence 6 7999999999999999999999999 999999999999999999999999993 2
Q ss_pred HHHHHhcCCCCCcccCCCCCCcccCCCCCCCcCceeeEeecCCCCCCCCCCCCCCCCeeEEeeeccccc-----------
Q 002324 206 RDIWLKFLPASRVLPFGCKDNFWEMGDTGPCGPCSEIHYDRTGNRDAASLVNNDDPTCIEIWNIVFIQF----------- 274 (936)
Q Consensus 206 ~~iW~~~v~~~rI~~~g~~dNfW~mG~~GPCGPCsEI~yD~~~~~~~~~~~~~~~~~~lEiWNlVFmq~----------- 274 (936)
+||||+|| |||||||||||| .|||||||||||
T Consensus 188 ------------------~dNfW~~G--GpcGPcsEI~~d-----------------glEiwNlVFmq~~~~~~~~~~~~ 230 (752)
T 2zze_A 188 ------------------KENPWAGG--GNAGPAFEVLYR-----------------GLEVATLVFMQYXXAPENAPQDQ 230 (752)
T ss_dssp ------------------EECCEEET--TEEECEEEEEET-----------------TEEEEEEEEEEEEECCTTCCSCC
T ss_pred ------------------ccCcccCC--CCCCCceeEEEC-----------------CEeeeeeeeeeeccccccccccc
Confidence 68999999 999999999997 199999999999
Q ss_pred --ccCCCCccccCCCCccccCchHHHHHHHHhCCCCCccccccHHHHHHHHHHhCCC-----------CCCCCCCCCccc
Q 002324 275 --NRESDGSLKPLPAKHVDTGLGFERLTSILQNKMSNYDTDVFMPIFDAIQQATGAR-----------PYSGKVGADDAD 341 (936)
Q Consensus 275 --~r~~~g~l~~Lp~~~IDTGmGLERl~~vlqg~~snydtDlF~pii~~i~~~~~~~-----------~y~g~~~~~~~~ 341 (936)
|| ++|+|+|||+||||||||||||||||||++||||| +|.|||++|++++|++ +|+|.++.++..
T Consensus 231 ~~~~-~~g~~~~Lp~~~IDTGmGlERl~~vlQg~~snydt-~f~pii~~~~~~~g~~y~~~~~~~~~a~~~g~~~~~~~~ 308 (752)
T 2zze_A 231 VVVI-XGEKYIPMETXVVDTGYGLERLVWMSQGTPTAYDA-VLGYVVEPLXXMAGIEKIDEKILMENSRLAGMFDIEDLG 308 (752)
T ss_dssp EEET-TTEEEEEEEEEEEEEEEEHHHHHHHHHCCSSHHHH-HSHHHHHHHHHHHTCCCCCHHHHHHHHHHHHTCCSSSSS
T ss_pred hhcc-cCCeeeeCCccccccccCHHHHHHHHcCCCchHHH-HHHHHHHHHHHhcCCCccchhhhhhhhhccccCCccchh
Confidence 88 69999999999999999999999999999999999 9999999999999985 133444422211
Q ss_pred cc------------------------cchhhhhhhhhhhhheeecCCCccCCCCCchHHHHHHHHHHHHHHhhhCCCccc
Q 002324 342 KV------------------------DMAYRVVADHIRTLSFAIADGSCPGNEGREYVLRRILRRAVRYGSEVLKAQDGF 397 (936)
Q Consensus 342 ~~------------------------d~a~rvIaDH~R~~~f~iaDG~~PsN~GrGYvLRrilRRa~r~~~~~lg~~~~f 397 (936)
.+ +.++||||||+||++|||+||++|||+|||||||||||||+||| ++||++.|
T Consensus 309 ~~~~~~~~va~~~~~~~~~~~~~~~~~~~~rvIaDH~R~~~f~i~DGv~PsN~GrGYvlRrilRRa~r~~-~~lg~~~~- 386 (752)
T 2zze_A 309 DLRYLREQVAKRVGITVEELEKAIRPYELIYAIADHTKALTFMLADGVVPSNVXAGYLARLLIRKSIRHL-RELGLEVP- 386 (752)
T ss_dssp CHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCSSSHHHHHHHHHHHHHHHHH-HHTTCCCC-
T ss_pred hHHHHHHHHHHhcCCCHHHHhhhccccceEEEehhhhhhhhhhcccCCCcCccchhHHHHHHHHHHHHHH-HHhCCCcc-
Confidence 11 46889999999999999999999999999999999999999999 57999999
Q ss_pred hhhHHHHHHHHhCCCChhhHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc---CCCCChhhhhheeccCCCChh
Q 002324 398 FNGLVNIVVKVMGDVFPELKQREAHIREIIAAEEASFGKTLLKGIEKFKKAAQDVQ---GKVLSGQDAFILWDTYGFPLD 474 (936)
Q Consensus 398 l~~lv~~v~~~m~~~ypel~~~~~~I~~vi~~Ee~~F~~tl~~g~~~l~~~~~~~~---~~~l~g~~af~LydTyGfP~d 474 (936)
|++|||.|++.|+++||||.++++.|++||+.||++|.+||++|+++|++++++++ +++|||++||+||||||||+|
T Consensus 387 l~~lv~~~~~~m~~~ypel~~~~~~I~~vi~~EE~~F~~Tl~~G~~~l~~~~~~~~~~~~~~l~g~~af~LyDTyGfP~d 466 (752)
T 2zze_A 387 LSEIVALHIXELHKTFPEFXEMEDIILEMIELEEKXYAETLRRGSDLVRREIAKLKKKGIKEIPVEXLVTFYESHGLTPE 466 (752)
T ss_dssp HHHHHHHHHHHHTTTCTHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCSCCCHHHHHHHHHHHCCCHH
T ss_pred hhHHHHHHHHHhhhhchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCccCHHHHHHHHhccCCCHH
Confidence 99999999999999999999999999999999999999999999999999998864 257999999999999999999
Q ss_pred hHHHHHHHcCceeChh-hHHHHHHHHHHHhHhhhhcccCCccccchHHHHHHhhcCCCCcccccCcc--cceeeeEEEEE
Q 002324 475 LTQLMAEERGLLVDIE-GFNNAMDEARERSRSAQNKQAGGAIVMDADATAALHKRGVLATDDSFKFI--WFQDHKSVIKA 551 (936)
Q Consensus 475 lt~~~a~e~g~~vd~~-~f~~~~~~~~~~sr~~~~~~~~~~~~~~~~~~~~l~~~~~~~t~~~~~Y~--y~~~~~a~Vl~ 551 (936)
||++||+|+|++||++ +|+++|++||+++|++.. ... .+ ...+. ..++|+ +.+|+ |.++++|+|++
T Consensus 467 lt~~ia~e~g~~vd~~~~F~~~m~~q~~~~r~~~~-~~~----~~---~~~~~--~~~~T~-~l~Y~~~yl~~~~a~Vl~ 535 (752)
T 2zze_A 467 IVXEIAEKEGVKVNIPDNFYSMVAKEAERTKEEKG-EEL----VD---FELLK--DLPDTR-RLYYEDPFMXEFDAXVLR 535 (752)
T ss_dssp HHHHHHTTSSCCCCCCTTHHHHHHGGGGCC--------C----CC---SSSSS--SSCCCE-EHHHHCTTCCEEEEEEEE
T ss_pred HHHHHHHHcCCccCCcccHHHHHHHHHHHHhhccc-ccc----hh---hHHhc--cCCCce-eecccCCccceEEEEEEE
Confidence 9999999999999999 899999999999885421 000 00 01111 245675 88887 23789999999
Q ss_pred EEeCCeeeeeccCCCeEEEEeeceeEEEccCCeeeccceeecccceEEEEEEEEeCCEEEEEEEeecCCcccCCCCEEEE
Q 002324 552 IYTGSEFIESVVPGNEVGIVLASSSFYAEQGGQIFDEGFIEGLFGSFYVRNVQIYGGFVIHIGSLTEGAGRFSVGEEVIC 631 (936)
Q Consensus 552 i~~~~~~v~~~~~~~~~~VvLD~T~FYpEgGGQ~~D~G~I~~~~~~~~V~dv~k~~g~i~H~~~~~~~~g~l~~G~~V~~ 631 (936)
|.. ..||||+|||||||||||+|+|+|..++..+.|.+|++.+|.++|++.. . +.+++|++|.+
T Consensus 536 i~~-------------~~VVLD~TpFYpEgGGQ~~D~G~I~~~g~~~~V~dv~k~~g~ivH~~~~-~--~~l~vGd~V~~ 599 (752)
T 2zze_A 536 VIX-------------DWVILDATAFYPEGGGQPYDTGVLIVNGREVXVTNVQXVGXVIIHXVED-P--GAFXEGMIVHG 599 (752)
T ss_dssp EET-------------TEEEESEECSCCSBTTBCCCCEEEEETTEEEEEEEEEEETTEEEEEESC-G--GGCCTTCEEEE
T ss_pred EEc-------------CEEEEeCCCCCCCCCCCCCCEEEEEeCCEEEEEEeeeecCcEEEEeccc-c--CccCcCCeEEE
Confidence 973 3699999999999999999999997766679999999999999999874 3 77999999999
Q ss_pred EEcHhhhhhHHhhhhHHHHHHHHHHHHhCCccccccccccCCceEEEecCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEE
Q 002324 632 KVDYDRRKLIAPNHTCTHMLNFALREVLGDHVDQKGSVVLPEKLRFDFSHGKPVDPEHLRRIESIVNEQIKAELDVFSKE 711 (936)
Q Consensus 632 ~VD~erR~~~m~~HTAtHLL~aALr~vlG~~v~q~Gs~v~~d~lrfDF~~~~~ls~eeL~~IE~~vNeiI~~nlpV~~~~ 711 (936)
+|||+||+.+|++|||+|||++||+++||.+++|.|+++.++++||||+++.++|++++++||++||++|++|+||++.+
T Consensus 600 ~VD~~rR~~~mr~HTAtHLL~~ALr~vlG~~v~q~Gs~v~~d~~rfDFs~~~~lt~edL~~IE~~vNeiI~~nlpV~~~~ 679 (752)
T 2zze_A 600 XIDWXRRIQHMRHHTGTHVLMGALVRVLGRHVWQAGSQLTTDWARLDISHYXRISEEELXEIEMLANRIVMEDRXVTWEW 679 (752)
T ss_dssp EECHHHHHHHHHHHHHHHHHHHHHHHHHCTTCEEEEEEECSSCEEEEEECSSCCCHHHHHHHHHHHHHHHHHTCBEEEEE
T ss_pred EEeHHHHHHHHHHhHHHHHHHHHHHHHcCCceeeecCcccCCceEEEEeCCCCCCHHHHHHHHHHHHHHHHhCCccceee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCHHHHHhhcCccccc--CCcCCCCEEEEEEcccccccccCCCCCcccceeeeeccCcccccccccccEEEEeEeeccCC
Q 002324 712 ATLAEAKCINGLRAVF--GEVYPDPVRVVAIGRKVEDLLADPENKEWLSISAELCGGTHLSNTREAEAFALLSEEGIAKG 789 (936)
Q Consensus 712 ~~~eEA~~~~g~~alf--gE~y~d~VRVV~Ig~~~~~ll~~p~~~~~~~~svelCgGTHV~nTgeIg~fkI~s~ssi~kG 789 (936)
++++||+++.+ .++| +++|++.||||+|| ++|+++||||||+|||+||.|+|++++++++|
T Consensus 680 ~s~eEA~~~~~-~~lf~~ge~ygd~VRVV~IG----------------d~svelCGGTHV~nTgeIG~fKIls~s~i~~G 742 (752)
T 2zze_A 680 LPRTTAEQXYG-FRLYQGGVVPGREIRVVXIE----------------DWDVQACGGTHLPSTGLVGPIXILRTERIQDG 742 (752)
T ss_dssp EEHHHHHHHHC-GGGCSSCCCCSSEEEEEEET----------------TTEEEECCSCCCSBGGGGCCEEEEEEEEEETT
T ss_pred cCHHHHhhcch-hhhhcCCCCCCCeEEEEEEC----------------CceeCCCCCCccCCHhHccEEEEEEEEEEcCC
Confidence 99999999744 4666 77899999999998 68999999999999999999999999999999
Q ss_pred ceEEEEEeCh
Q 002324 790 IRRITAVTTG 799 (936)
Q Consensus 790 vrRIeavtG~ 799 (936)
+|||+|+||.
T Consensus 743 vrRIeavtG~ 752 (752)
T 2zze_A 743 VERIIFACGE 752 (752)
T ss_dssp EEEEEEEECC
T ss_pred EEEEEEEeCC
Confidence 9999999994
No 2
>2ztg_A Alanyl-tRNA synthetase; class-II aminoacyl-tRNA synthetase, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase; HET: A5A; 2.20A {Archaeoglobus fulgidus}
Probab=100.00 E-value=4.2e-188 Score=1662.54 Aligned_cols=622 Identities=27% Similarity=0.467 Sum_probs=568.9
Q ss_pred cCCChhHHHHHHHHhhhcCCCeeecCCCcccCCCCCcceecccccccccccc-CCCCCCCcccccccccccccccccCCC
Q 002324 56 VEWPATKVRDTFFKFFEDKNHVNWKSSPVVPVNDPTLLFANAGMNQYKPIFL-GTADPNTQLSKLTRACNTQKCIRAGGK 134 (936)
Q Consensus 56 ~~~~~~eiR~~Fl~fF~~~gH~~v~ssslvp~~DptllFtnAGM~qFK~~fl-G~~~p~~~~~~~~r~~~~QkCiR~gGK 134 (936)
++|+++|||++|++||++|||+++|||||||+||||||||||||+||||||+ |..+|+ +.|+|++|||||+
T Consensus 58 ~~~~~~eir~~f~~ff~~~gh~~~~s~~lvp~~dptllft~agm~~fkp~~~~g~~~p~-----~~~~~~~Q~ciR~--- 129 (739)
T 2ztg_A 58 KPFELDEMREYYLNFFERRGHGRIERYPVVARWRTDIYLTIASIADFQPFVTSGVAPPP-----ANPLTISQPCIRL--- 129 (739)
T ss_dssp SCCCHHHHHHHHHHHHHTTTCEECCCCCSBCTTCSSBSBCCSGGGGGTTTTTTSSSCCS-----SSSEEEEEEEECG---
T ss_pred CCCCHHHHHHHHHHHHHHCCCEEeCCcCcCCCCCCCceeeecChhhCcHhHhCCCCCCC-----CCCcccccccccC---
Confidence 5699999999999999999999999999999999999999999999999997 999886 4799999999997
Q ss_pred CCCCCCCCCCCCcccccccccccccc-----cccHHHHHHHHHHHchhccCCCCCceEEEEECCCCcCCCCCcHHHHHHH
Q 002324 135 HNDLDDVGKDTYHHTFFEMLGNWSFG-----DYFKNEAIEWAWELLTKVYRLPADRLYATYFGGDEKAGLAPDNEARDIW 209 (936)
Q Consensus 135 hNDld~VG~t~rHhTfFEMLGnfSFG-----dYfK~eAI~~awe~Lt~~l~l~~~rL~vTv~~~d~~~~~~~D~Ea~~iW 209 (936)
|||||||+|+||||||||||||||| ||||+|||.|||||| ++|||||+|| ++
T Consensus 130 -~D~envg~t~rH~tfFeMlgn~sFg~~~~~dYfK~eai~~~~e~l-~~~g~~~~~i--~~------------------- 186 (739)
T 2ztg_A 130 -DDLDSVGRTGRHLTLFEMMAHHAFNYPGKEIYWKNETVAYCTELL-NELGVKKEDI--VY------------------- 186 (739)
T ss_dssp -GGGGGTTTSSSCCSEEEEEEEEEEEBTTBCSCCHHHHHHHHHHHH-HHHTCCGGGC--EE-------------------
T ss_pred -cccccCCCCCcchhhhhccCccccCCCccccchHHHHHHHHHHHH-HHhCCCHHHe--ee-------------------
Confidence 7999999999999999999999999 999999999999999 8899999987 21
Q ss_pred HhcCCCCCcccCCCCCCcccCCCCCCCcCceeeEeecCCCCCCCCCCCCCCCCeeEEeeecccccccCCCCccc------
Q 002324 210 LKFLPASRVLPFGCKDNFWEMGDTGPCGPCSEIHYDRTGNRDAASLVNNDDPTCIEIWNIVFIQFNRESDGSLK------ 283 (936)
Q Consensus 210 ~~~v~~~rI~~~g~~dNfW~mG~~GPCGPCsEI~yD~~~~~~~~~~~~~~~~~~lEiWNlVFmq~~r~~~g~l~------ 283 (936)
+||||+|| |||||||||||| | |||||+|||||||+++|+++
T Consensus 187 --------------~dnfW~~g--Gp~Gpc~Ei~~d---g--------------~EiwnlVfmq~~r~~~g~~~~~~~~y 233 (739)
T 2ztg_A 187 --------------KEEPWAGG--GNAGPCLEAIVG---G--------------LEVATLVFMNLEEHPEGDIEIKGARY 233 (739)
T ss_dssp --------------EEEEEEET--TEEEEEEEEEET---T--------------EEEEEEEEEEEEECTTCCEEETTEEE
T ss_pred --------------ccCcccCC--CCCCCeeEEEEC---C--------------EEeeeeeeEEeeecCCCceeecCccc
Confidence 68999999 999999999997 1 99999999999999999998
Q ss_pred -cCCCCccccCchHHHHHHHHhCCCCCccccccHHHHHHHHHHhCCCCC-----------------CCCCCCCcccccc-
Q 002324 284 -PLPAKHVDTGLGFERLTSILQNKMSNYDTDVFMPIFDAIQQATGARPY-----------------SGKVGADDADKVD- 344 (936)
Q Consensus 284 -~Lp~~~IDTGmGLERl~~vlqg~~snydtDlF~pii~~i~~~~~~~~y-----------------~g~~~~~~~~~~d- 344 (936)
|||+|+||||||||||||+|||++||||| +|.|||++|++++|++ | +|+++.++.+.++
T Consensus 234 ~~l~~~~iDtG~GlER~~~~lqg~~s~yd~-~f~pii~~~~~~~g~~-y~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~~ 311 (739)
T 2ztg_A 234 RKMDNYIVDTGYGLERFVWASKGTPTVYDA-IFPEVVDTIIDNSNVS-FNREDERVRRIVAESSKLAGIMGELRGERLNQ 311 (739)
T ss_dssp EEEEEEEEEEEEEHHHHHHHHHCCSSHHHH-HCHHHHHHHHHTSCCS-SCTTCHHHHHHHHHHHHHHHHHTTCCTHHHHH
T ss_pred cCCCCCeEecCcCHHHHHHHHcCCCchHHh-hHHHHHHHHHHHhCCC-ccccccchhhhhhhhhhcccccCcccchhHHH
Confidence 99999999999999999999999999999 9999999999999975 4 2333333211111
Q ss_pred -----------------------chhhhhhhhhhhhheeecCCCccCCCCCchHHHHHHHHHHHHHHhhhCCCccchhhH
Q 002324 345 -----------------------MAYRVVADHIRTLSFAIADGSCPGNEGREYVLRRILRRAVRYGSEVLKAQDGFFNGL 401 (936)
Q Consensus 345 -----------------------~a~rvIaDH~R~~~f~iaDG~~PsN~GrGYvLRrilRRa~r~~~~~lg~~~~fl~~l 401 (936)
.++||||||+||++|||+||++|||+|||||||||||||+||| ++||++.| |++|
T Consensus 312 ~~~~~a~~~~~~~~~~~~~~~~~~~~rviaDH~R~~~f~i~DGv~PsN~grGYvlRrilRRa~r~~-~~lg~~~~-l~~l 389 (739)
T 2ztg_A 312 LRKSVADTVGVSVEELEGIVVPLEKVYSLADHTRCILFMLGDGLVPSNAGAGYLARLMIRRSLRLA-EELELGLD-LYDL 389 (739)
T ss_dssp HHHHHHHHHSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCSSHHHHHHHHHHHHHHHHH-HHTTCSSC-HHHH
T ss_pred HHHHhhhhcccchhhhhhhccccceEEEEecHHHHHHHHhccCcccCCCCcchHHHHHHHHHHHHH-HHhCCCcc-HHHH
Confidence 5889999999999999999999999999999999999999999 67999999 9999
Q ss_pred HHHHHHHhCCCChhhHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCChhhhhheeccCCCChhhHHHHHH
Q 002324 402 VNIVVKVMGDVFPELKQREAHIREIIAAEEASFGKTLLKGIEKFKKAAQDVQGKVLSGQDAFILWDTYGFPLDLTQLMAE 481 (936)
Q Consensus 402 v~~v~~~m~~~ypel~~~~~~I~~vi~~Ee~~F~~tl~~g~~~l~~~~~~~~~~~l~g~~af~LydTyGfP~dlt~~~a~ 481 (936)
||.|++.|++ ||.++++.|++||+.||++|.+||++|+++|+++++++++ |||++||+||||||||+|||++||+
T Consensus 390 v~~~~~~m~~---el~~~~~~I~~vi~~EE~~F~~Tl~~G~~~l~~~~~~~~~--l~g~~af~LyDTyGfP~dlt~~ia~ 464 (739)
T 2ztg_A 390 VEMHKKILGF---EFDVPLSTVQEILELEKERYRTTVSKGTRLVERLVERKKK--LEKDDLIELYDSHGIPVELAVGIAA 464 (739)
T ss_dssp HHHHHHHHCC---CCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSB--CCHHHHHHHHHHHCCCHHHHHHHHH
T ss_pred HHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--CCHHHHHHHHHhcCCCHHHHHHHHH
Confidence 9999999999 9999999999999999999999999999999999998753 9999999999999999999999999
Q ss_pred HcCceeChh-hHHHHHHHHHHHhHhhhhcccCCccccchHHHHHHhhcCCCCcccccCcc--cceeeeEEEEEEEeCCee
Q 002324 482 ERGLLVDIE-GFNNAMDEARERSRSAQNKQAGGAIVMDADATAALHKRGVLATDDSFKFI--WFQDHKSVIKAIYTGSEF 558 (936)
Q Consensus 482 e~g~~vd~~-~f~~~~~~~~~~sr~~~~~~~~~~~~~~~~~~~~l~~~~~~~t~~~~~Y~--y~~~~~a~Vl~i~~~~~~ 558 (936)
|+|++||++ +|+++|++||++||++. . . + + .+. .+.++|+ +.+|+ |.++++|+|++|..
T Consensus 465 e~g~~vd~~~~F~~~m~~q~~~a~~~~--~-~-----~---~-~~~-~~~~~T~-~l~Y~~~y~~~~~a~Vl~i~~---- 526 (739)
T 2ztg_A 465 EKGAEVEMPKDIYAELAKRHSKAEKVQ--E-K-----K---I-TLQ-NEYPATE-KLYYDDPTLLEFEAEVIGVEG---- 526 (739)
T ss_dssp HTTCBCCCCTTHHHHHHHTTSBCCCCC--C-C-----C---C-CCS-SCCCCCE-ECTTTCTTCCEEEEEEEEEET----
T ss_pred HcCCeeCCcccHHHHHHHHHHHHhhcc--c-c-----c---h-hhh-ccCCCce-eecccCCcccEEEEEEEEEEc----
Confidence 999999999 89999999999887531 1 1 1 0 111 1245675 88898 23789999999973
Q ss_pred eeeccCCCeEEEEeeceeEEEccCCeeeccceeecccceEEEEEEEEeCCEEEEEEEeecCCccc-CCCCEEEEEEcHhh
Q 002324 559 IESVVPGNEVGIVLASSSFYAEQGGQIFDEGFIEGLFGSFYVRNVQIYGGFVIHIGSLTEGAGRF-SVGEEVICKVDYDR 637 (936)
Q Consensus 559 v~~~~~~~~~~VvLD~T~FYpEgGGQ~~D~G~I~~~~~~~~V~dv~k~~g~i~H~~~~~~~~g~l-~~G~~V~~~VD~er 637 (936)
..||||+|||||||||||+|+|+|..++..+.|.+|++.+|.++|++. +.+ ++|++|.++|||+|
T Consensus 527 ---------~~VVLD~TpFYpEgGGQ~~D~G~I~~~g~~~~V~dv~k~~g~ivH~~~-----~~~~~~Gd~V~~~VD~~r 592 (739)
T 2ztg_A 527 ---------DFVILNRSAFYPESGGQDNDVGYLIANGGKFEVVDVLEADGVVLHVVK-----GAKPEVGTKVKGVIDSDV 592 (739)
T ss_dssp ---------TEEEESEECCCCSBTTBCCCCEEEEETTEEEEECEEEEETTEEEEECC-----SSCCCTTCEEEEEECHHH
T ss_pred ---------CEEEEeCCCCCCCCCCCCCCEEEEEECCEEEEEEEEEEECCEEEEEEc-----ccCCCCCCEEEEEEcHHH
Confidence 369999999999999999999999776667999999999999999875 445 69999999999999
Q ss_pred hhhHHhhhhHHHHHHHHHHHHhCCccccccccccCCceEEEecCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEcCHHHH
Q 002324 638 RKLIAPNHTCTHMLNFALREVLGDHVDQKGSVVLPEKLRFDFSHGKPVDPEHLRRIESIVNEQIKAELDVFSKEATLAEA 717 (936)
Q Consensus 638 R~~~m~~HTAtHLL~aALr~vlG~~v~q~Gs~v~~d~lrfDF~~~~~ls~eeL~~IE~~vNeiI~~nlpV~~~~~~~eEA 717 (936)
|+.+|++|||+|||++||+++||.+++|.||+++++++||||+++.++|++++++||++||++|++|+||++.+++++||
T Consensus 593 R~~~m~~HTAtHLL~~ALr~vlG~~v~q~GS~v~~d~~r~DF~~~~~lT~edL~~IE~~vNeiI~~nlpV~~~~~s~eEA 672 (739)
T 2ztg_A 593 RWRHMRHHSATHVLLYSLQKVLGNHVWQAGARKEFSKARLDVTHFRRPSEEEIKEIEMLANREILANKPIKWEWMDRIEA 672 (739)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCTTCCEEECCSCCSSCEEEEECSSCCCHHHHHHHHHHHHHHHHTTCBEEEEEEEHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCcEEecCcEEcCCcEEEEEeCCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEeCHHHH
Confidence 99999999999999999999999999999999999999999999889999999999999999999999999999999999
Q ss_pred HhhcCccccc--CCcCCCCEEEEEEcccccccccCCCCCcccceeeeeccCcccccccccccEEEEeEeeccCCceEEEE
Q 002324 718 KCINGLRAVF--GEVYPDPVRVVAIGRKVEDLLADPENKEWLSISAELCGGTHLSNTREAEAFALLSEEGIAKGIRRITA 795 (936)
Q Consensus 718 ~~~~g~~alf--gE~y~d~VRVV~Ig~~~~~ll~~p~~~~~~~~svelCgGTHV~nTgeIg~fkI~s~ssi~kGvrRIea 795 (936)
++++++ +++ +++|++.||||+|| + ++++||||||+|||+||.|+|++++++++|+|||+|
T Consensus 673 ~~~~~l-~L~~~~~~~~d~VRVV~IG----------------d-~~elCGGTHV~nTgeIg~fkIls~s~i~~GvrRIea 734 (739)
T 2ztg_A 673 ERKFGF-RLYQGGVPPGRKIRVVQVG----------------D-DVQACGGTHCRSTGEIGMLKILKVESIQDGVIRFEF 734 (739)
T ss_dssp HHHHCG-GGGTTCCCCSSEEEEEEET----------------T-EEEECCSCCCSBGGGGCCEEEEEEEEEETTEEEEEE
T ss_pred HHhCCH-hhhcCCCCCCCeEEEEEEC----------------C-eeeCcCCcCcccHhHcCcEEEEEEeEEcCCEEEEEE
Confidence 998654 455 56788899999998 4 899999999999999999999999999999999999
Q ss_pred EeChh
Q 002324 796 VTTGL 800 (936)
Q Consensus 796 vtG~~ 800 (936)
+||.+
T Consensus 735 vtG~~ 739 (739)
T 2ztg_A 735 AAGEA 739 (739)
T ss_dssp EESCC
T ss_pred EecCC
Confidence 99963
No 3
>3hy0_A Alanyl-tRNA synthetase; aminoacyl-tRNA synthetase, ligase, protein biosynthesis, NUC binding, amino acid-binding, ATP-binding, metal-binding; HET: G5A EPE; 1.90A {Escherichia coli} PDB: 3hxz_A* 3hy1_A* 3hxv_A* 3hxu_A* 3hxw_A* 3hxx_A* 3hxy_A*
Probab=100.00 E-value=3.2e-179 Score=1485.25 Aligned_cols=424 Identities=50% Similarity=0.891 Sum_probs=405.3
Q ss_pred CChhHHHHHHHHhhhcCCCeeecCCCcccCCCCCcceeccccccccccccCCCCCCCcccccccccccccccccCCCCCC
Q 002324 58 WPATKVRDTFFKFFEDKNHVNWKSSPVVPVNDPTLLFANAGMNQYKPIFLGTADPNTQLSKLTRACNTQKCIRAGGKHND 137 (936)
Q Consensus 58 ~~~~eiR~~Fl~fF~~~gH~~v~ssslvp~~DptllFtnAGM~qFK~~flG~~~p~~~~~~~~r~~~~QkCiR~gGKhND 137 (936)
+|++|||++||+||++|||++||||||||+|||||||||||||||||||+|+++|+ ++|||||||||||||||||
T Consensus 2 ~~~~eiR~~Fl~FF~~kgH~~v~Ssslvp~~DptLLftnAGM~~FKp~flG~~~p~-----~~r~~~sQkCiR~gGKHnD 76 (441)
T 3hy0_A 2 KSTAEIRQAFLDFFHSKGHQVVASSSLVPHNDPTLLFTNAGMNQFKDVFLGLDKRN-----YSRATTSQRCVRAGGKHND 76 (441)
T ss_dssp CCHHHHHHHHHHHHHHTTCEECCCCCSSCSSCTTCSSCCSGGGGGHHHHHTSSCCS-----CSEEEEEEEEECEETTEEC
T ss_pred CCHHHHHHHHHHHHHhCCCeEcCCCCccCCCCCCceeecccchhhhhhhcCCCCCC-----CCCccccccceecCCCCCC
Confidence 68999999999999999999999999999999999999999999999999999886 5899999999999999999
Q ss_pred CCCCCCCCCcccccccccccccccccHHHHHHHHHHHch--hccCCCCCceEEEEECCCCcCCCCCcHHHHHHHHhc--C
Q 002324 138 LDDVGKDTYHHTFFEMLGNWSFGDYFKNEAIEWAWELLT--KVYRLPADRLYATYFGGDEKAGLAPDNEARDIWLKF--L 213 (936)
Q Consensus 138 ld~VG~t~rHhTfFEMLGnfSFGdYfK~eAI~~awe~Lt--~~l~l~~~rL~vTv~~~d~~~~~~~D~Ea~~iW~~~--v 213 (936)
|||||+|+|||||||||||||||||||+|||.||||||| ++|||||||||||||+ .|+||++||++. |
T Consensus 77 lenVG~t~rHhTfFEMLGNfSFGDYFK~eAI~~Awe~LT~~~~lgl~~erL~vTvf~--------~D~Ea~~iW~~~~Gv 148 (441)
T 3hy0_A 77 LENVGYTARHHTFFEMLGNFSFGDYFKLDAILFAWLLLTSEKWFALPKERLWVTVYE--------SDDEAYEIWEKEVGI 148 (441)
T ss_dssp GGGBTTBSSCCSEEEEEEEEESSSCCHHHHHHHHHHHHHCTTTTCCCGGGEEEEEET--------TCHHHHHHHHHTTCC
T ss_pred HHhhCCCCccccceeeccccccchhhHHHHHHHHHHHhCCCCccCCCHHHeEEEEeC--------CCHHHHHHHHHccCC
Confidence 999999999999999999999999999999999999999 6799999999999998 489999999995 9
Q ss_pred CCCCcccCC-------CCCCcccCCCCCCCcCceeeEeecCCCCC--CCCCCCCCCCCeeEEeeecccccccCCCCcccc
Q 002324 214 PASRVLPFG-------CKDNFWEMGDTGPCGPCSEIHYDRTGNRD--AASLVNNDDPTCIEIWNIVFIQFNRESDGSLKP 284 (936)
Q Consensus 214 ~~~rI~~~g-------~~dNfW~mG~~GPCGPCsEI~yD~~~~~~--~~~~~~~~~~~~lEiWNlVFmq~~r~~~g~l~~ 284 (936)
|++||+++| .+||||+||+|||||||||||||||+... ..+.+++||||||||||||||||||+++|+|.|
T Consensus 149 p~~rI~~~g~~~~~~y~~dNFW~mG~tGPCGPCsEI~yD~g~~~~~g~~~~~~~d~~r~lEIWNlVFmQy~r~~~g~l~p 228 (441)
T 3hy0_A 149 PRERIIRIGDNKGAPYASDNFWQMGDTGPCGPCTEIFYDHGDHIWGGPPGSPEEDGDRYIEIWNIVFMQFNRQADGTMEP 228 (441)
T ss_dssp CGGGEEEECSTTSBTTBBTTEEESSSSEEEEEEEEEEEECCTTSCCCCTTSTTTTSSSEEEEEEEEEEEEEECTTSCEEE
T ss_pred CHHHeeecCccccccccccCchhcCCCcCCcCCeeEEEecCcccCCCCCCCCCCCCCCeEEEeeeeeeeeeecCCCcccc
Confidence 999999999 89999999999999999999999974321 123468999999999999999999999999999
Q ss_pred CCCCccccCchHHHHHHHHhCCCCCccccccHHHHHHHHHHhCCCCCCCCCCCCccccccchhhhhhhhhhhhheeecCC
Q 002324 285 LPAKHVDTGLGFERLTSILQNKMSNYDTDVFMPIFDAIQQATGARPYSGKVGADDADKVDMAYRVVADHIRTLSFAIADG 364 (936)
Q Consensus 285 Lp~~~IDTGmGLERl~~vlqg~~snydtDlF~pii~~i~~~~~~~~y~g~~~~~~~~~~d~a~rvIaDH~R~~~f~iaDG 364 (936)
||+||||||||||||||||||++||||||+|.|||++|++++|.. | ..++||||||||+||++|||+||
T Consensus 229 Lp~k~IDTGmGLERla~vlQg~~snYdtDlf~pii~~i~~~~g~~-~----------~~~~s~rvIADH~R~~~f~iaDG 297 (441)
T 3hy0_A 229 LPKPSVDTAMGLERIAAVLQHVNSNYDIDLFRTLIQAVAKVTGAT-D----------LSNKSLRVIADHIRSCAFLIADG 297 (441)
T ss_dssp EEEEEEEEEEEHHHHHHHHTTCSSGGGSHHHHHHHHHHHHHHTCC-C----------TTCHHHHHHHHHHHHHHHHHHTT
T ss_pred CCCCceecCCCHHHHHHHHcCCCccccchhHHHHHHHHHHHhCCC-c----------cccceeEEecchHHHHHHHHhcC
Confidence 999999999999999999999999999999999999999999974 3 13689999999999999999999
Q ss_pred CccCCCCCchHHHHHHHHHHHHHHhhhCCCccchhhHHHHHHHHhCCCChhhHhcHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002324 365 SCPGNEGREYVLRRILRRAVRYGSEVLKAQDGFFNGLVNIVVKVMGDVFPELKQREAHIREIIAAEEASFGKTLLKGIEK 444 (936)
Q Consensus 365 ~~PsN~GrGYvLRrilRRa~r~~~~~lg~~~~fl~~lv~~v~~~m~~~ypel~~~~~~I~~vi~~Ee~~F~~tl~~g~~~ 444 (936)
++|||+|||||||||||||+||| ++||++.+||++|||+|++.|++.||||.++++.|++||+.||++|.+||++|+++
T Consensus 298 v~PsNeGrGYVLRRilRRAvr~g-~~Lg~~~~fl~~Lv~~v~~~m~~~yPeL~~~~~~I~~vi~~EE~~F~~TL~~G~~~ 376 (441)
T 3hy0_A 298 VMPSNENRGYVLRRIIRRAVRHG-NMLGAKETFFYKLVGPLIDVMGSAGEDLKRQQAQVEQVLKTEEEQFARTLERGLAL 376 (441)
T ss_dssp CCCCSSHHHHHHHHHHHHHHHHH-HHHTCCSCCGGGGHHHHHHHHGGGGHHHHHTHHHHHHHHHHHHHHHHTTHHHHHHH
T ss_pred cccCCCCcchhHHHHHHHHHHHH-HHhCCCCccHHHHHHHHHHHHhhhhhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999 57999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhcCCCCChhhhhheeccCCCChhhHHHHHHHcCceeChhhHHHHHHHHHHHhHhh
Q 002324 445 FKKAAQDVQGKVLSGQDAFILWDTYGFPLDLTQLMAEERGLLVDIEGFNNAMDEARERSRSA 506 (936)
Q Consensus 445 l~~~~~~~~~~~l~g~~af~LydTyGfP~dlt~~~a~e~g~~vd~~~f~~~~~~~~~~sr~~ 506 (936)
|+++++++++++|||++||+||||||||+|||++||+|+|++||+++|+++|++||+|||++
T Consensus 377 l~~~~~~~~~~~l~g~~af~LyDTyGfP~dLt~eia~e~g~~vD~~~F~~~m~~qr~rar~~ 438 (441)
T 3hy0_A 377 LDEELAKLSGDTLDGETAFRLYDTYGFPVDLTADVCRERNIKVDEAGFEAAMEEQRRRAREA 438 (441)
T ss_dssp HHHHHHSCCSSEECHHHHHHHHHHHCCCHHHHHHHHHTTTCEECHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCCCHHHHHhhhhcCCCCHHHHHHHHHHcCCcccHHHHHHHHHHHHHHHHhc
Confidence 99999887556899999999999999999999999999999999999999999999999975
No 4
>1yfs_A Alanyl-tRNA synthetase; alpha-beta fold, helix-loop-helix motif, amino acid binding, ligase; 2.08A {Aquifex aeolicus} SCOP: a.203.1.1 d.104.1.1 PDB: 1yfr_A* 1riq_A 1yft_A 1ygb_A 3htz_A
Probab=100.00 E-value=5.7e-179 Score=1491.14 Aligned_cols=423 Identities=48% Similarity=0.894 Sum_probs=405.2
Q ss_pred CChhHHHHHHHHhhhcCCCeeecCCCcccCCCCCcceeccccccccccccCCCCCCCcccccccccccccccccCCCCCC
Q 002324 58 WPATKVRDTFFKFFEDKNHVNWKSSPVVPVNDPTLLFANAGMNQYKPIFLGTADPNTQLSKLTRACNTQKCIRAGGKHND 137 (936)
Q Consensus 58 ~~~~eiR~~Fl~fF~~~gH~~v~ssslvp~~DptllFtnAGM~qFK~~flG~~~p~~~~~~~~r~~~~QkCiR~gGKhND 137 (936)
|+++|||++||+||++|||++||||||||+|||||||||||||||||||+|+++|+ ++|||||||||||||||||
T Consensus 3 ~~~~eiR~~Fl~FF~~kgH~~vpSsslvp~~DptLLftnAGM~~FKp~flG~~~p~-----~~r~t~sQkCiRag~~hND 77 (465)
T 1yfs_A 3 LSAHEIRELFLSFFEKKGHTRVKSAPLVPENDPTLLFVNAGMVPFKNVFLGLEKRP-----YKRATSCQKCLRVSGKHND 77 (465)
T ss_dssp CCHHHHHHHHHHHHHTTTCEECCCCCSSCTTCTTCSSCCSTTSTTHHHHHTSSCCS-----CSEEEEEEEEECEETTEEC
T ss_pred CCHHHHHHHHHHHHHhCCCEEecCCCcccCCCCCcceeccchhhhhHHhcCCCCCC-----CCceeccccccccCCCccc
Confidence 89999999999999999999999999999999999999999999999999999987 5899999999999999999
Q ss_pred CCCCCCCCCcccccccccccccccccHHHHHHHHHHHchhccCCCCCceEEEEECCCCcCCCCCcHHHHHHHHhc--CCC
Q 002324 138 LDDVGKDTYHHTFFEMLGNWSFGDYFKNEAIEWAWELLTKVYRLPADRLYATYFGGDEKAGLAPDNEARDIWLKF--LPA 215 (936)
Q Consensus 138 ld~VG~t~rHhTfFEMLGnfSFGdYfK~eAI~~awe~Lt~~l~l~~~rL~vTv~~~d~~~~~~~D~Ea~~iW~~~--v~~ 215 (936)
|||||+|+|||||||||||||||||||+|||+|||||||++|||||||||||||+ +|+||++||++. ||+
T Consensus 78 lenVG~t~rHhTfFEMLGNfSFGDYFK~eAI~~AwE~LT~~lgl~~~rL~vTv~~--------~D~Ea~~iW~~~~G~p~ 149 (465)
T 1yfs_A 78 LEQVGYTSRHHTFFEMLGNFSFGDYFKKEAIEYAWEFVTEVLKLPKEKLYVSVYK--------DDEEAYRIWNEHIGIPS 149 (465)
T ss_dssp GGGBTTBSSCCSEEEEEEEEESSSCCHHHHHHHHHHHHHHTSCCCGGGEEEEEET--------TCHHHHHHHHTTTCCCG
T ss_pred HhhcCCCCCccchheeccccchhhhhHHHHHHHHHHHHHhhcCCCHHHeEEEEeC--------CCHHHHHHHHHhcCCCH
Confidence 9999999999999999999999999999999999999999999999999999998 489999999996 999
Q ss_pred CCcccCCCCCCcccCCCCCCCcCceeeEeecCCCCCCCCCCCCCCCCeeEEeeecccccccCCCCccccCCCCccccCch
Q 002324 216 SRVLPFGCKDNFWEMGDTGPCGPCSEIHYDRTGNRDAASLVNNDDPTCIEIWNIVFIQFNRESDGSLKPLPAKHVDTGLG 295 (936)
Q Consensus 216 ~rI~~~g~~dNfW~mG~~GPCGPCsEI~yD~~~~~~~~~~~~~~~~~~lEiWNlVFmq~~r~~~g~l~~Lp~~~IDTGmG 295 (936)
+||+++|.+||||+||+|||||||||||||+|++++ +|||||||||||||||||++||+|.|||+||||||||
T Consensus 150 ~rI~~~g~~dNFW~mG~tGPCGPCsEI~yD~g~~~~-------~~~r~lEIWNlVFmQy~r~~~g~l~pLp~k~IDTGmG 222 (465)
T 1yfs_A 150 ERIWRLGEEDNFWQMGDVGPCGPSSEIYVDRGEEYE-------GDERYLEIWNLVFMQYNRDENGVLTPLPHPNIDTGMG 222 (465)
T ss_dssp GGEEEECHHHHEEESSSSEEEEEEEEEEEECCTTSC-------HHHHEEEEEEEEEEEEEECTTSCEEEEEEEEEEEEEE
T ss_pred HHeeeCCCcCCcccCCCCcCCCCCeEEEEccCCCCC-------CCCCEEEeeeeeeeEEEecCCCccccCCCCceecCcC
Confidence 999999999999999999999999999999987654 2789999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCCCCccccccHHHHHHHHHHhCCCCCCCCCCCCccccccchhhhhhhhhhhhheeecCCCccCCCCCchH
Q 002324 296 FERLTSILQNKMSNYDTDVFMPIFDAIQQATGARPYSGKVGADDADKVDMAYRVVADHIRTLSFAIADGSCPGNEGREYV 375 (936)
Q Consensus 296 LERl~~vlqg~~snydtDlF~pii~~i~~~~~~~~y~g~~~~~~~~~~d~a~rvIaDH~R~~~f~iaDG~~PsN~GrGYv 375 (936)
||||||||||++||||||+|.|||++|++++|++ |. .+ +..|+||||||||+||++|||+||++|||+|||||
T Consensus 223 LERla~vlQg~~snYdtDlf~pii~~i~~~~g~~-Y~----~~--~~~d~s~rvIADH~R~~~f~I~DGv~PsN~GrGYV 295 (465)
T 1yfs_A 223 LERIASVLQGKNSNFEIDIIFPLIQFGEEVSGKK-YG----EK--FETDVALRVIADHLRAITFAISDGVIPSNEGRGYV 295 (465)
T ss_dssp HHHHHHHHTTCSSGGGSTTTHHHHHHHHHHHCCC-TT----SC--HHHHHHHHHHHHHHHHHHHHHHTTCCCCSBHHHHH
T ss_pred HHHHHHHHcCCCccchhhhHHHHHHHHHHHhCCC-CC----CC--cccceeEEEEcchhhhhhhhhccccccCCCCcchH
Confidence 9999999999999999999999999999999985 73 22 45678999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhhCCCccchhhHHHHHHHHhCCCChhhHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc--
Q 002324 376 LRRILRRAVRYGSEVLKAQDGFFNGLVNIVVKVMGDVFPELKQREAHIREIIAAEEASFGKTLLKGIEKFKKAAQDVQ-- 453 (936)
Q Consensus 376 LRrilRRa~r~~~~~lg~~~~fl~~lv~~v~~~m~~~ypel~~~~~~I~~vi~~Ee~~F~~tl~~g~~~l~~~~~~~~-- 453 (936)
||||||||+||| ++||++.|||++|||+|++.|++.||||.++++.|++||+.||++|.+||++|+++|++++++++
T Consensus 296 LRRilRRavr~g-~~Lg~~~~fl~~Lv~~v~~~m~~~yPel~~~~~~I~~vi~~EE~~F~~TL~~G~~~l~~~~~~~~~~ 374 (465)
T 1yfs_A 296 IRRILRRAMRFG-YKLGIENPFLYKGVDLVVDIMKEPYPELELSREFVKGIVKGEEKRFIKTLKAGMEYIQEVIQKALEE 374 (465)
T ss_dssp HHHHHHHHHHHH-HHTTCCSCCHHHHHHHHHHHHTTTCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHH-HHhCCCchhHHHHHHHHHHHHhccCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 999999999999 56999999999999999999999999999999999999999999999999999999999998863
Q ss_pred -CCCCChhhhhheeccCCCChhhHHHHHHHcCceeChhhHHHHHHHHHHHhHhhhh
Q 002324 454 -GKVLSGQDAFILWDTYGFPLDLTQLMAEERGLLVDIEGFNNAMDEARERSRSAQN 508 (936)
Q Consensus 454 -~~~l~g~~af~LydTyGfP~dlt~~~a~e~g~~vd~~~f~~~~~~~~~~sr~~~~ 508 (936)
+++|||++||+||||||||+|||++||+|+|++||+++|+++|++||++||++++
T Consensus 375 ~~~~l~G~~af~LyDTyGfP~dLt~eia~e~g~~vD~~gF~~~m~~q~~rar~~~~ 430 (465)
T 1yfs_A 375 GRKTLSGKEVFTAYDTYGFPVDLIDEIAREKGLGIDLEGFQCELEEQRERARKHFK 430 (465)
T ss_dssp TCCEECHHHHHHHHHTSCCCHHHHHHHHHTTTCEECHHHHHHHHHHHHHTTTTC--
T ss_pred CCCcCCHHHHHhhhhccCCCHHHHHHHHHHcCCeeCHHHHHHHHHHHHHHHHhhhh
Confidence 2369999999999999999999999999999999999999999999999998754
No 5
>3kew_A DHHA1 domain protein; structural genomics, PSI-2, tRNA synthase, protein structure initiative; 2.00A {Clostridium perfringens}
Probab=100.00 E-value=5e-54 Score=457.11 Aligned_cols=224 Identities=23% Similarity=0.280 Sum_probs=205.2
Q ss_pred ccceeeeEEEEEEEeCCeeeeeccCCCeEEEEeeceeEEEccCCeeeccceeecccceEEEEEEEEeCCEEEEEEEeecC
Q 002324 540 IWFQDHKSVIKAIYTGSEFIESVVPGNEVGIVLASSSFYAEQGGQIFDEGFIEGLFGSFYVRNVQIYGGFVIHIGSLTEG 619 (936)
Q Consensus 540 ~y~~~~~a~Vl~i~~~~~~v~~~~~~~~~~VvLD~T~FYpEgGGQ~~D~G~I~~~~~~~~V~dv~k~~g~i~H~~~~~~~ 619 (936)
.|..+++|+|+++..+ ++.+.|+||+|||||||||||+|+|+|. .+.|.+|++.+|.++|++.
T Consensus 11 ~y~~~~~a~V~~~~~~---------~~~~~vvLd~T~FYpegGGQ~~D~G~i~----~~~V~~v~~~~g~i~H~~~---- 73 (241)
T 3kew_A 11 QYIKEFKGEIIEVKEI---------DGKFHVLLDQTAFFPGGGGQMGDLGLID----GIKVLDVYEEEGKVYHVLE---- 73 (241)
T ss_dssp TTCCEEEECEEEEEEE---------TTEEEEEESEECCCCCBTTBCCCCEEET----TEEEEEEEEETTEEEEEES----
T ss_pred cccceeEEEEEEEEec---------CCeEEEEEeCCcccCCCCCCCCCEEEEe----eEEEEEEEEeCCEEEEEEC----
Confidence 3567899999999863 3458899999999999999999999994 4899999999999999985
Q ss_pred CcccCCCCEEEEEEcHhhhhhHHhhhhHHHHHHHHHHHHhCCccccccccccCCceEEEecCCCCCCHHHHHHHHHHHHH
Q 002324 620 AGRFSVGEEVICKVDYDRRKLIAPNHTCTHMLNFALREVLGDHVDQKGSVVLPEKLRFDFSHGKPVDPEHLRRIESIVNE 699 (936)
Q Consensus 620 ~g~l~~G~~V~~~VD~erR~~~m~~HTAtHLL~aALr~vlG~~v~q~Gs~v~~d~lrfDF~~~~~ls~eeL~~IE~~vNe 699 (936)
+++++|++|.+.|||+||+++|++|||+|||++||+++||.+ +.|+++.++++||||+ +++|++++++||++||+
T Consensus 74 -~~l~~g~~V~~~vD~~rR~~~~~~HTa~HLL~~al~~~~g~~--~~G~~v~~~~~r~Df~--~~lt~e~l~~IE~~vn~ 148 (241)
T 3kew_A 74 -KEPKKLKNLQCELDWERRFDGMQQHLGQHLLSGCFYDLFGAN--TCGFHLGKEISTVDIV--GFLDEKTIREAEKEANR 148 (241)
T ss_dssp -SCCCCCSSEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHCCC--EEEEEECSSCEEEEEE--SCCCHHHHHHHHHHHHH
T ss_pred -CcCCCCCEEEEEECHHHhhhHHHHHHHHHHHHHHHHHHCCCC--eEeccccCCeEEEEEC--CCCCHHHHHHHHHHHHH
Confidence 678999999999999999999999999999999999999987 5999999999999999 78999999999999999
Q ss_pred HHHhcCCEEEEEcCHHHHHhhcCcccccCCcCCCCEEEEEEcccccccccCCCCCcccceeeeeccCcccccccccccEE
Q 002324 700 QIKAELDVFSKEATLAEAKCINGLRAVFGEVYPDPVRVVAIGRKVEDLLADPENKEWLSISAELCGGTHLSNTREAEAFA 779 (936)
Q Consensus 700 iI~~nlpV~~~~~~~eEA~~~~g~~alfgE~y~d~VRVV~Ig~~~~~ll~~p~~~~~~~~svelCgGTHV~nTgeIg~fk 779 (936)
+|++|+||++.+++++||+++ +++++ +++|++.||||+|+ ++|+++||||||+|||+||.|+
T Consensus 149 ~I~~~~pV~~~~~~~~eA~~~-~~~~~-~e~~~~~VRvv~ig----------------~~~~~~CgGtHV~~TgeIg~fk 210 (241)
T 3kew_A 149 LIFENLEVKSYAPSKKELKKV-KTRRA-LPKTDEEIRIVEIV----------------GLDLNACCGVHPRNTRDLQVIK 210 (241)
T ss_dssp HHHHTCBEEEECCCTTTTTTC-CCSSC-CCCCSSCCCEEEET----------------TTEEEECCSCCCSBSGGGCCEE
T ss_pred HHHcCCCEEEEEcCHHHHHhc-Chhhc-CCccCCcEEEEEEC----------------CeEEEcCCCCCcCCHhhcCCEE
Confidence 999999999999999999997 67775 67799999999998 6899999999999999999999
Q ss_pred EEeEeeccCCceEEEEEeChhHHHH
Q 002324 780 LLSEEGIAKGIRRITAVTTGLAYKA 804 (936)
Q Consensus 780 I~s~ssi~kGvrRIeavtG~~A~~~ 804 (936)
|+++++++ |.+||+|+||.+|++.
T Consensus 211 I~~~~~~~-~~~RI~~~~G~~a~~~ 234 (241)
T 3kew_A 211 IRRWEKHK-NATRIEYVAGNRAVSE 234 (241)
T ss_dssp EEEEEEET-TEEEEEEEEGGGGC--
T ss_pred EEEEeccC-CcEEEEEEECHHHHhc
Confidence 99999975 4579999999999864
No 6
>2e1b_A PH0108, 216AA long hypothetical alanyl-tRNA synthetase; zinc-binding motif, trans-editing enzyme, structural genomics, NPPSFA; 2.70A {Pyrococcus horikoshii} SCOP: b.43.3.6 d.67.1.2
Probab=100.00 E-value=4.4e-49 Score=412.97 Aligned_cols=200 Identities=29% Similarity=0.385 Sum_probs=182.4
Q ss_pred ccceeeeEEEEEEEeCCeeeeeccCCCeEEEEeeceeEEEccCCeeeccceeecccceEEEEEEEEe-CCEEEEEEEeec
Q 002324 540 IWFQDHKSVIKAIYTGSEFIESVVPGNEVGIVLASSSFYAEQGGQIFDEGFIEGLFGSFYVRNVQIY-GGFVIHIGSLTE 618 (936)
Q Consensus 540 ~y~~~~~a~Vl~i~~~~~~v~~~~~~~~~~VvLD~T~FYpEgGGQ~~D~G~I~~~~~~~~V~dv~k~-~g~i~H~~~~~~ 618 (936)
.|..+++|+|+++.. ..|+||+|||||||||||+|+|+|. + ++|.+|++. +|.++|++.. .
T Consensus 13 ~y~~~~~a~V~~~~~-------------~~vvld~T~Fype~GGQ~~D~G~i~---~-~~V~~v~~~~~~~i~H~~~~-~ 74 (216)
T 2e1b_A 13 AYLKEAKGRVLEIRD-------------NAILLDQTIFYPTGGGQPHDRGTIN---G-VEVLDVYKDEEGNVWHVVKE-P 74 (216)
T ss_dssp TTCCEEEECBCCCCS-------------SCCCBSCCCSCCCCTTCCCCCEEET---T-EEEEEEECCTTCCCEEEESC-G
T ss_pred cccceeeEEEEEEeC-------------CEEEEeCCCccCCCCCCCCCEEEEc---c-EEEEEEEECcCCEEEEEEcc-C
Confidence 356789999998821 1599999999999999999999995 2 999999997 9999999863 3
Q ss_pred CCcccCCCCEEEEEEcHhhhhhHHhhhhHHHHHHHHHHHHhCCc-cccccccccCCceEEEecCCCCCCHHHHHHHHHHH
Q 002324 619 GAGRFSVGEEVICKVDYDRRKLIAPNHTCTHMLNFALREVLGDH-VDQKGSVVLPEKLRFDFSHGKPVDPEHLRRIESIV 697 (936)
Q Consensus 619 ~~g~l~~G~~V~~~VD~erR~~~m~~HTAtHLL~aALr~vlG~~-v~q~Gs~v~~d~lrfDF~~~~~ls~eeL~~IE~~v 697 (936)
+++++|++|.++|||+||+.+|++|||+|||++||+++||.+ +.+.|++++++++||||+++++++++ +++||++|
T Consensus 75 --~~l~~g~~v~~~vD~~rR~~~~~~HTA~HlL~~Al~~~~g~~~~~~~g~~v~~~~~r~Df~~~~~lt~e-l~~IE~~v 151 (216)
T 2e1b_A 75 --EKFKVGDEVELKIDWDYRYKLMRIHTGLHLLEHVLNEVLGEGNWQLVGSGMSVEKGRYDIAYPENLNKY-KEQIISLF 151 (216)
T ss_dssp --GGCCSSSCEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHTTTSCEEEECCBCSSEEEEEEECSSCGGGG-HHHHHHHH
T ss_pred --CCcCCCCEEEEEECHHHHHHHHHHhHHHHHHHHHHHHHcCCccceeeeeeEcCCcEEEEEeCCCCCCHH-HHHHHHHH
Confidence 689999999999999999999999999999999999999984 34579999999999999998889987 99999999
Q ss_pred HHHHHhcCCEEEEEcCHHHHHhhcCcccccCCcCCCCEEEEEEcccccccccCCCCCcccceeeeeccCccccccccccc
Q 002324 698 NEQIKAELDVFSKEATLAEAKCINGLRAVFGEVYPDPVRVVAIGRKVEDLLADPENKEWLSISAELCGGTHLSNTREAEA 777 (936)
Q Consensus 698 NeiI~~nlpV~~~~~~~eEA~~~~g~~alfgE~y~d~VRVV~Ig~~~~~ll~~p~~~~~~~~svelCgGTHV~nTgeIg~ 777 (936)
|++|++|+||++.++++ ||+|+|| ++|+++||||||+|||+||.
T Consensus 152 n~~I~~~~pv~~~~~~~--------------------vRvv~ig----------------~~~~~~CgGtHV~~TgeIg~ 195 (216)
T 2e1b_A 152 NKYVDEGGEVKIWWEGD--------------------RRYTQIR----------------DFEVIPCGGTHVKDIKEIGH 195 (216)
T ss_dssp HHHHHHCCBEEEEESSS--------------------CEEEEET----------------TSCEECCCSCCCSBGGGTCC
T ss_pred HHHHhcCCCEEEEEcCC--------------------EEEEEEC----------------CEEEECCCCCCcccHhhCce
Confidence 99999999999987763 8999998 58999999999999999999
Q ss_pred EEEEeEeeccCCceEEEEE
Q 002324 778 FALLSEEGIAKGIRRITAV 796 (936)
Q Consensus 778 fkI~s~ssi~kGvrRIeav 796 (936)
|+|++++++++|+|||++.
T Consensus 196 fkI~~~~~~~~g~rRi~~~ 214 (216)
T 2e1b_A 196 IKKLKRSSIGRGKQRLEMW 214 (216)
T ss_dssp EEEEEEEEEETTEEEEEEE
T ss_pred EEEEEEeEEcCCEEEEEEE
Confidence 9999999999999999986
No 7
>1tke_A Threonyl-tRNA synthetase; ligase; 1.46A {Escherichia coli} SCOP: d.15.10.1 d.67.1.1 PDB: 1tje_A 1tkg_A* 1tky_A*
Probab=99.94 E-value=3.5e-26 Score=240.52 Aligned_cols=169 Identities=18% Similarity=0.303 Sum_probs=136.9
Q ss_pred eCCEEEEEEEeecCCcccCCCCEEEEEEcHhhh-hhHHhhhhHHHHHHHHHHHHhCCccccccccccCCceEEEecCCCC
Q 002324 606 YGGFVIHIGSLTEGAGRFSVGEEVICKVDYDRR-KLIAPNHTCTHMLNFALREVLGDHVDQKGSVVLPEKLRFDFSHGKP 684 (936)
Q Consensus 606 ~~g~i~H~~~~~~~~g~l~~G~~V~~~VD~erR-~~~m~~HTAtHLL~aALr~vlG~~v~q~Gs~v~~d~lrfDF~~~~~ 684 (936)
.+|.+++. . .+|..|+.|. -|+++.+ -..|++|||+|||++|++++||......| ++.++++||||++..+
T Consensus 40 vNg~l~dL----~--~~l~~~~~ve-~it~~~~~g~~~~~HS~~HlL~~A~~~~~~~~~~~~g-~~~~~g~y~d~~~~~~ 111 (224)
T 1tke_A 40 VNGELVDA----C--DLIENDAQLS-IITAKDEEGLEIIRHSCAHLLGHAIKQLWPHTKMAIG-PVIDNGFYYDVDLDRT 111 (224)
T ss_dssp ETTEEEET----T--CCBCSCEEEE-EECTTSHHHHHHHHHHHHHHHHHHHHHHSTTCEECCC-CEETTEEEEEEECSSC
T ss_pred ECCEEecc----c--eEcCCCCeEE-EEecCchhHHHHHHHHHHHHHHHHHHHHCCCcEEEEC-CccCCeEEEEEeCCCC
Confidence 46666653 1 4667777776 4676555 36799999999999999999985322346 4557999999998889
Q ss_pred CCHHHHHHHHHHHHHHHHhcCCEEEEEcCHHHHHhhcCc------ccccCC-c-CCCCEEEEEEcccccccccCCCCCcc
Q 002324 685 VDPEHLRRIESIVNEQIKAELDVFSKEATLAEAKCINGL------RAVFGE-V-YPDPVRVVAIGRKVEDLLADPENKEW 756 (936)
Q Consensus 685 ls~eeL~~IE~~vNeiI~~nlpV~~~~~~~eEA~~~~g~------~alfgE-~-y~d~VRVV~Ig~~~~~ll~~p~~~~~ 756 (936)
+|++++.+||++||++|++|+||++.+++++||++++.. ..++++ . +.+.||++++|
T Consensus 112 ~t~edl~~IE~~m~~iI~~~~pi~~~~~~~~eA~~~f~~~~~~~k~~l~~~~~~~~~~v~vy~~g--------------- 176 (224)
T 1tke_A 112 LTQEDVEALEKRMHELAEKNYDVIKKKVSWHEARETFANRGESYKVSILDENIAHDDKPGLYFHE--------------- 176 (224)
T ss_dssp CCHHHHHHHHHHHHHHHTTCCBCEEEECCHHHHHHHHHHTTCHHHHHHHHHHSCTTCCCEEEEET---------------
T ss_pred CCHHHHHHHHHHHHHHHhCCCCEEEEEecHHHHHHHHHHcCCchHHHHhccccCCCCeeEEEEeC---------------
Confidence 999999999999999999999999999999999987432 234443 3 55789999998
Q ss_pred cceeeeeccCcccccccccccEEEEeEeec-------cCCceEEEEEeCh
Q 002324 757 LSISAELCGGTHLSNTREAEAFALLSEEGI-------AKGIRRITAVTTG 799 (936)
Q Consensus 757 ~~~svelCgGTHV~nTgeIg~fkI~s~ssi-------~kGvrRIeavtG~ 799 (936)
++ +++||||||+|||+||.|+|+++++. ++.++||++++.+
T Consensus 177 -~~-~dlC~G~Hv~~Tg~i~~fkl~~~~~~yw~g~~~~~~lqRiyg~a~~ 224 (224)
T 1tke_A 177 -EY-VDMCRGPHVPNMRFCHHFKLMKTAGAYWRGDSNNKMLQRIYGTAWA 224 (224)
T ss_dssp -TE-EEEESCCCCSBGGGCCCEEEEEEEEEEGGGCTTSCEEEEEEEEECC
T ss_pred -CE-EEECCCcCCCcCcccceEEEEEecceeEcCCCCCceeEEEEEeccC
Confidence 44 79999999999999999999998774 6679999999853
No 8
>1v4p_A Alanyl-tRNA synthetase; alanine-tRNA ligase, riken structural genomics/proteomics initiative RSGI, structural genomics; 1.45A {Pyrococcus horikoshii} SCOP: d.67.1.2 PDB: 1wxo_A 1v7o_A 1wnu_A 3rhu_A 3rfn_A
Probab=99.93 E-value=6.6e-26 Score=225.59 Aligned_cols=143 Identities=22% Similarity=0.187 Sum_probs=118.3
Q ss_pred HHhhhhHHHHHHHHHHHHhCCccccccc-cccCCceEEEecCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEcCHHHHHh
Q 002324 641 IAPNHTCTHMLNFALREVLGDHVDQKGS-VVLPEKLRFDFSHGKPVDPEHLRRIESIVNEQIKAELDVFSKEATLAEAKC 719 (936)
Q Consensus 641 ~m~~HTAtHLL~aALr~vlG~~v~q~Gs-~v~~d~lrfDF~~~~~ls~eeL~~IE~~vNeiI~~nlpV~~~~~~~eEA~~ 719 (936)
.|++|||+|||++|++++||.++.+.++ .+.++++|+||+...++|++++.+||+.||++|++|+||++.+++++||++
T Consensus 5 ~~~~HSa~HlL~~Al~~~~~~~~~~~~~~~i~~~~~~~~~d~~~~~t~e~l~~IE~~~n~~I~~~~pi~~~~~~~~eA~~ 84 (157)
T 1v4p_A 5 EVRTHSALHVVKGAVVKVLGSEAKWTYSTYVKGNKGVLIVKFDRKPSDEEIREIERLANEKVKENAPIKIYELPREEAEK 84 (157)
T ss_dssp HHHHHHHHHHHHHHHHHHHCGGGCCEEEEEEETTEEEEEEECSSCCCHHHHHHHHHHHHHHHHHTCBCEEEEEEHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHhCCCcEEecCceecCCCcEEEEEeCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEeCHHHHHH
Confidence 5899999999999999999965555554 666667888887777899999999999999999999999999999999999
Q ss_pred hcCcccccCCcCC---CCEEEEEEcccccccccCCCCCcccceeeeeccCcccccccccccEEEEeEee-ccCCceEEEE
Q 002324 720 INGLRAVFGEVYP---DPVRVVAIGRKVEDLLADPENKEWLSISAELCGGTHLSNTREAEAFALLSEEG-IAKGIRRITA 795 (936)
Q Consensus 720 ~~g~~alfgE~y~---d~VRVV~Ig~~~~~ll~~p~~~~~~~~svelCgGTHV~nTgeIg~fkI~s~ss-i~kGvrRIea 795 (936)
+++...+-.+.+| +.||||+|| ++|+++||||||+|||+||.|+|++.++ .+++..||++
T Consensus 85 ~f~~~~~~~~~~~~~~~~vrv~~ig----------------~~~~~~C~GtHv~~Tg~I~~fki~~~~~~~~~~~l~v~~ 148 (157)
T 1v4p_A 85 MFGEDMYDLFPVPEDVRILKVVVIE----------------DWNVNACNKEHTKTTGEIGPIKIRKVRFRKSKGLLEIHF 148 (157)
T ss_dssp HHGGGGSCSSCCCTTCCEEEEEEET----------------TTEEEECCSCCCSBGGGTCCEEEEEEEEETTTTEEEEEE
T ss_pred hhCccccccccCCCCCCeEEEEEEC----------------CeeEeCCCCCccCChhhcceEEEEEEEecCCCcEEEEEE
Confidence 8765322111233 469999998 5789999999999999999999999886 3455668888
Q ss_pred EeCh
Q 002324 796 VTTG 799 (936)
Q Consensus 796 vtG~ 799 (936)
..++
T Consensus 149 ~v~~ 152 (157)
T 1v4p_A 149 ELLE 152 (157)
T ss_dssp EEC-
T ss_pred EEee
Confidence 7764
No 9
>1nyr_A Threonyl-tRNA synthetase 1; ATP, threonine, ligase; HET: ATP; 2.80A {Staphylococcus aureus} SCOP: c.51.1.1 d.15.10.1 d.67.1.1 d.104.1.1 PDB: 1nyq_A*
Probab=99.89 E-value=3.3e-23 Score=248.43 Aligned_cols=147 Identities=20% Similarity=0.352 Sum_probs=125.8
Q ss_pred hhhHHhhhhHHHHHHHHHHHHhCCccccccccccCCceEEEecCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEcCHHHH
Q 002324 638 RKLIAPNHTCTHMLNFALREVLGDHVDQKGSVVLPEKLRFDFSHGKPVDPEHLRRIESIVNEQIKAELDVFSKEATLAEA 717 (936)
Q Consensus 638 R~~~m~~HTAtHLL~aALr~vlG~~v~q~Gs~v~~d~lrfDF~~~~~ls~eeL~~IE~~vNeiI~~nlpV~~~~~~~eEA 717 (936)
.-..+.+|||+|||++|++++||.+..+.|+.+ ++++||||+++.++|++++.+||+.||++|++|+||++.+++++||
T Consensus 68 ~g~~~~~HSa~HlL~~A~~~~~~~~~~~~g~~~-~~g~~~Df~~~~~~t~edl~~IE~~m~~iI~~~~pi~~~~~~~~eA 146 (645)
T 1nyr_A 68 EALEVLRHSTAHLMAHAIKRLYGNVKFGVGPVI-EGGFYYDFDIDQNISSDDFEQIEKTMKQIVNENMKIERKVVSRDEA 146 (645)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSSSCEECCCCEE-TTEEEEEEECSSCCCSTTHHHHHHHHHHHHHTTCCEEEEECTTTHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHcCCcEEEECCcc-CCceEEEecCCCCCCHHHHHHHHHHHHHHHHhCCCeEEEEecHHHH
Confidence 445689999999999999999999888999887 7999999998889999999999999999999999999999999999
Q ss_pred HhhcCcc----cccCCcCC-CCEEEEEEcccccccccCCCCCcccceeeeeccCcccccccccccEEEEeEee-------
Q 002324 718 KCINGLR----AVFGEVYP-DPVRVVAIGRKVEDLLADPENKEWLSISAELCGGTHLSNTREAEAFALLSEEG------- 785 (936)
Q Consensus 718 ~~~~g~~----alfgE~y~-d~VRVV~Ig~~~~~ll~~p~~~~~~~~svelCgGTHV~nTgeIg~fkI~s~ss------- 785 (936)
+++++-. .+...... +.|||+++| ++ +++||||||+|||+||.|+|+++++
T Consensus 147 ~~~f~~~~yk~~li~~~~~~~~vrv~~~g----------------~~-~dlC~G~Hv~~Tg~i~~fkl~~~~~a~~~~~~ 209 (645)
T 1nyr_A 147 KELFSNDEYKLELIDAIPEDENVTLYSQG----------------DF-TDLCRGVHVPSTAKIKEFKLLSTAGAYWRGDS 209 (645)
T ss_dssp HHHCSSCHHHHHHHCCCSSSCCCEEEEET----------------TE-EEECCSCCCSCGGGCCEEEEEEEEEEETTSCS
T ss_pred HHHHhhCcchHHHhhcCCCCCeeEEEEEC----------------CE-EEecCCcccCCCCCCceEEEeeeCchHHHHHh
Confidence 9885410 11111111 479999998 44 7999999999999999999999973
Q ss_pred ccCCceEEEEEeChhHH
Q 002324 786 IAKGIRRITAVTTGLAY 802 (936)
Q Consensus 786 i~kGvrRIeavtG~~A~ 802 (936)
.++.++||+.++.....
T Consensus 210 ~~~~l~ri~g~~~~~~~ 226 (645)
T 1nyr_A 210 NNKMLQRIYGTAFFDKK 226 (645)
T ss_dssp SSCEEEEEEEEEESSHH
T ss_pred HHHHHHHHHHHhcCCHH
Confidence 46789999999987643
No 10
>1qf6_A THRRS, threonyl-tRNA synthetase; tRNA(Thr), AMP, mRNA, aminoacylati translational regulation, protein/RNA, ligase-RNA complex; HET: H2U AET G7M 5MU PSU AMP; 2.90A {Escherichia coli} SCOP: c.51.1.1 d.15.10.1 d.67.1.1 d.104.1.1
Probab=99.88 E-value=2.3e-22 Score=240.78 Aligned_cols=145 Identities=20% Similarity=0.329 Sum_probs=122.3
Q ss_pred hhhHHhhhhHHHHHHHHHHHHhCCccccccccccCCceEEEecCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEcCHHHH
Q 002324 638 RKLIAPNHTCTHMLNFALREVLGDHVDQKGSVVLPEKLRFDFSHGKPVDPEHLRRIESIVNEQIKAELDVFSKEATLAEA 717 (936)
Q Consensus 638 R~~~m~~HTAtHLL~aALr~vlG~~v~q~Gs~v~~d~lrfDF~~~~~ls~eeL~~IE~~vNeiI~~nlpV~~~~~~~eEA 717 (936)
.-..+++|||+|||++|++++||....+.|+.+. +++||||++..++|++++.+||+.||++|++|+||++.+++++||
T Consensus 66 ~~~~~~~HSa~HlL~~Al~~~~~~~~~~~G~~i~-~gfy~Df~~~~~~t~edl~~IE~~m~~iI~~~~~v~~~~~~~~eA 144 (642)
T 1qf6_A 66 EGLEIIRHSCAHLLGHAIKQLWPHTKMAIGPVID-NGFYYDVDLDRTLTQEDVEALEKRMHELAEKNYDVIKKKVSWHEA 144 (642)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCTTCEECCCCEET-TEEEEEEECSSCCCHHHHHHHHHHHHHHHHHTCBEEEEECCHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCcEEEECCccC-CeeEEEEeCCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEecHHHH
Confidence 3455899999999999999999874458898776 889999999889999999999999999999999999999999999
Q ss_pred HhhcCc------cccc-CCcCC-CCEEEEEEcccccccccCCCCCcccceeeeeccCcccccccccccEEEEeEeec---
Q 002324 718 KCINGL------RAVF-GEVYP-DPVRVVAIGRKVEDLLADPENKEWLSISAELCGGTHLSNTREAEAFALLSEEGI--- 786 (936)
Q Consensus 718 ~~~~g~------~alf-gE~y~-d~VRVV~Ig~~~~~ll~~p~~~~~~~~svelCgGTHV~nTgeIg~fkI~s~ssi--- 786 (936)
++++.. ..++ ++.++ +.||++++| ++ +++||||||+|||+||.|+|+++++.
T Consensus 145 ~~~~~~~~e~yk~~li~~~~~~~~~v~vy~~g----------------~~-~dlC~GpHv~~Tg~I~~fkl~~~~~~yw~ 207 (642)
T 1qf6_A 145 RETFANRGESYKVSILDENIAHDDKPGLYFHE----------------EY-VDMCRGPHVPNMRFCHHFKLMKTAGAYWR 207 (642)
T ss_dssp HHHHHHHTCHHHHHHHHHHSCTTCCCEEEEET----------------TE-EECCSSCCCSBGGGCCSEEEEEEEEEEGG
T ss_pred HHHhhhhCCcchhhhhhcccCCCCceEEEEEC----------------CE-EEecCCCccCCCCcceeEEEeeecccccc
Confidence 987432 1122 22222 479999998 44 79999999999999999999999882
Q ss_pred ----cCCceEEEEEeChh
Q 002324 787 ----AKGIRRITAVTTGL 800 (936)
Q Consensus 787 ----~kGvrRIeavtG~~ 800 (936)
+..++||+.++.+.
T Consensus 208 g~~~~~~l~r~~g~~~~~ 225 (642)
T 1qf6_A 208 GDSNNKMLQRIYGTAWAD 225 (642)
T ss_dssp GCTTSCEEEEEEEEECSS
T ss_pred CccCCceeEeeeccccCc
Confidence 55688999998764
No 11
>2zvf_A Alanyl-tRNA synthetase; C-terminal, oligomerization domain, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase, nucleotide-binding; 3.20A {Archaeoglobus fulgidus}
Probab=98.53 E-value=3.9e-07 Score=91.38 Aligned_cols=96 Identities=17% Similarity=0.129 Sum_probs=84.7
Q ss_pred eChhHHHHHHHHHHHHHHHHHHhcccchhhHHHHHHHHhhhccCCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002324 797 TTGLAYKAFEAACSLEKEVDDASKIEGSLLEKTVASLKSKVDGAAIPAPKKADIRAKIALLQNQVRKAQKKVAEENLQKA 876 (936)
Q Consensus 797 tG~~A~~~~~~~~~~~~~l~~ll~~~~~~~~~~v~~l~~~l~~~~ip~~~~~~l~~~l~~l~~~~~~~~k~~~~l~~~~a 876 (936)
.|.+|+++++..++++++++.+++++ ++++++++++|++++++++|++++++.+++
T Consensus 1 ~G~~A~~~~~~~~~~l~~~a~~Lk~~------------------------~~~l~~~v~~l~~e~k~l~ke~~~l~~~~a 56 (171)
T 2zvf_A 1 MGEAAIEAVEEMERLLREASSILRVE------------------------PAKLPKTVERFFEEWKDQRKEIERLKSVIA 56 (171)
T ss_dssp -CGGGTHHHHHHHHHHHHHHHTTTCC------------------------TTSHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHHHHhCCC------------------------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 48999999999999999999988864 458999999999999999999999999999
Q ss_pred HHHHHHHHHHhc-cCCccEEEEEccCCCCHHHHHHHHHHHHhh
Q 002324 877 VKVATETAEAAA-SNGKPFCISRVEVGLDAAAVREAVLKVIEQ 918 (936)
Q Consensus 877 ~~~~~~l~~~~~-~~~~~~~v~~~~~~~d~~~Lr~~~d~l~~k 918 (936)
...+.+++.++. .+++++++..+ +.|++.||.+++.++++
T Consensus 57 ~~~~~~l~~~~~~i~g~~~~~~~~--~~d~~~lr~~~~~l~~~ 97 (171)
T 2zvf_A 57 DLWADILMERAEEFDSMKVVAEVV--DADMQALQKLAERLAEK 97 (171)
T ss_dssp HHHHHHHHTTCEESSSCEEEEEEC--SCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhhcEEeCCEEEEEEEe--CCCHHHHHHHHHHHhcC
Confidence 998888887765 47899888877 67999999999999987
No 12
>3rf1_A Glycyl-tRNA synthetase alpha subunit; glycyl-tRNA synthetase subunit alpha, alpha/beta protein, ST genomics; 2.20A {Campylobacter jejuni} PDB: 3rgl_A* 3ufg_A*
Probab=95.24 E-value=0.06 Score=57.20 Aligned_cols=178 Identities=19% Similarity=0.271 Sum_probs=102.9
Q ss_pred CcCCChhHHHHHHHHhhhcCCCeeecCCCcccCCCCCcceecccccccccc-ccCCCCCCCccccccccccccccccc-C
Q 002324 55 VVEWPATKVRDTFFKFFEDKNHVNWKSSPVVPVNDPTLLFANAGMNQYKPI-FLGTADPNTQLSKLTRACNTQKCIRA-G 132 (936)
Q Consensus 55 ~~~~~~~eiR~~Fl~fF~~~gH~~v~ssslvp~~DptllFtnAGM~qFK~~-flG~~~p~~~~~~~~r~~~~QkCiR~-g 132 (936)
.+.|+-.+|--+--+|..++|+.++-++.+= .|--.|-|. ||..--|. | =+++-+|+|-|. -
T Consensus 22 ~~~~~fQ~iIl~Lq~fWa~qGC~i~QPyD~E-----------vGAGT~hPaTfLRalGpe-P----w~~AYVqPsRRP~D 85 (311)
T 3rf1_A 22 SNAMTFSQMILNLQNYWQEQGCAIMQPYDMP-----------AGAGTFHPATFLRSLGKK-P----WAAAYVAPSRRPTD 85 (311)
T ss_dssp GGSCCHHHHHHHHHHHHHTTTCEECCCCSSC-----------CSSGGGSHHHHTTTSSSS-C----EEEEEEEEEECGGG
T ss_pred cCcCcHHHHHHHHHHHHHHCCCEEECCcccc-----------ccCCCCCHHHHHHhcCCC-c----ceeeeeccCCCCCC
Confidence 3568999999999999999999998877642 234468884 55443331 1 378999999998 2
Q ss_pred CCCCCCCCCCCCCCcccccccccccccccccHHHHHHHHHHHchhccCCCCCceEEEEECCCCcCCCCCcHHHHHHHHhc
Q 002324 133 GKHNDLDDVGKDTYHHTFFEMLGNWSFGDYFKNEAIEWAWELLTKVYRLPADRLYATYFGGDEKAGLAPDNEARDIWLKF 212 (936)
Q Consensus 133 GKhNDld~VG~t~rHhTfFEMLGnfSFGdYfK~eAI~~awe~Lt~~l~l~~~rL~vTv~~~d~~~~~~~D~Ea~~iW~~~ 212 (936)
|.--+ |--+ -.||.=|..+=--|-.+ ..+.=.+-| +.+||||..
T Consensus 86 GRYGe--NPNR-Lq~yyQfQVilKPsP~n-----iQeLYL~SL-~alGId~~~--------------------------- 129 (311)
T 3rf1_A 86 GRYGE--NPNR-LGAYYQFQVLIKPSPDN-----IQELYLKSL-ENLGFDLKS--------------------------- 129 (311)
T ss_dssp CCTTC--CSSC-CSEEEEEEEEEESCCTT-----HHHHHHHHH-HHTTCCGGG---------------------------
T ss_pred CCcCC--Cchh-hhhheeeEEEEcCCCcc-----HHHHHHHHH-HHhCCCccc---------------------------
Confidence 22222 3333 45666666654445443 111111111 246666653
Q ss_pred CCCCCcccCCCCCCcccCCCCCCCcCceeeEeecCCCCCCCCCCCCCCCCeeEEeeecccccccCCCCccccCCCCcccc
Q 002324 213 LPASRVLPFGCKDNFWEMGDTGPCGPCSEIHYDRTGNRDAASLVNNDDPTCIEIWNIVFIQFNRESDGSLKPLPAKHVDT 292 (936)
Q Consensus 213 v~~~rI~~~g~~dNfW~mG~~GPCGPCsEI~yD~~~~~~~~~~~~~~~~~~lEiWNlVFmq~~r~~~g~l~~Lp~~~IDT 292 (936)
|=||| .+|| ||-=.-|--|-==|+-.|- +||= =|+=|.+ ..| + ++..-.+.-
T Consensus 130 ----HDIRF-VEDn-WEsPTLGAWGLGWEVWldG-----------------MEVT--QFTYFQQ-vGG-i-~c~pv~~EI 181 (311)
T 3rf1_A 130 ----HDIRF-VEDN-WESPSLGAWGLGWEVWLDG-----------------MEVT--QFTYFQQ-VGG-I-AVDLVSAEI 181 (311)
T ss_dssp ----SCEEE-EECC-EEETTTTEEEEEEEEEETT-----------------EEEE--EEEEEEE-ETT-E-ECSSCCEEE
T ss_pred ----cCeeE-eccC-CCCCcccccccceEEEEcC-----------------eeEe--eeeeeee-eCC-c-cccccceee
Confidence 33455 2455 5421124334333333220 4443 1333333 223 3 344445666
Q ss_pred CchHHHHHHHHhCCCCCccc
Q 002324 293 GLGFERLTSILQNKMSNYDT 312 (936)
Q Consensus 293 GmGLERl~~vlqg~~snydt 312 (936)
=+||||||+.|||+.|.||.
T Consensus 182 TYGLERlamylQ~vd~vyDl 201 (311)
T 3rf1_A 182 TYGLERIAMYLQNVDNVYDI 201 (311)
T ss_dssp EEEHHHHHHHHTTCSSGGGS
T ss_pred ehhHHHHHHHHhCCCeeeec
Confidence 79999999999999999986
No 13
>1j5w_A Glycyl-tRNA synthetase alpha chain; structural genomics, TM0216, JCSG, PSI, protein structure initiative; 1.95A {Thermotoga maritima} SCOP: d.104.1.1
Probab=83.60 E-value=0.38 Score=50.90 Aligned_cols=175 Identities=20% Similarity=0.296 Sum_probs=100.2
Q ss_pred CChhHHHHHHHHhhhcCCCeeecCCCcccCCCCCcceecccccccccc-ccCCCCCCCcccccccccccccccccC-CCC
Q 002324 58 WPATKVRDTFFKFFEDKNHVNWKSSPVVPVNDPTLLFANAGMNQYKPI-FLGTADPNTQLSKLTRACNTQKCIRAG-GKH 135 (936)
Q Consensus 58 ~~~~eiR~~Fl~fF~~~gH~~v~ssslvp~~DptllFtnAGM~qFK~~-flG~~~p~~~~~~~~r~~~~QkCiR~g-GKh 135 (936)
|--.+|--+--+|..++|+.++-++.+= .|--.|-|. ||..--|. | -+++-+|+|.|.. |.-
T Consensus 13 ~~fQ~iIl~Lq~fWa~~GC~i~QpyD~E-----------vGAGT~~PaTfLRaLGpe-p----w~~AYVqPsRRP~DGRY 76 (298)
T 1j5w_A 13 MYLQDVIMKLNDFWASKGCLLEQPYDME-----------VGAGTFHPATFFGSLRKG-P----WKVAYVQPSRRPTDGRY 76 (298)
T ss_dssp CCHHHHHHHHHHHHHHTTCEECCCCSSC-----------CSSGGGSHHHHTGGGCSS-C----EEEEEEEEEECCC----
T ss_pred HHHHHHHHHHHHHHHHCCCEEEcCcccc-----------cccccCCHHHHHHhcCCC-c----ceeeeeccCCCCCCCCc
Confidence 4567888899999999999998877642 244467783 44332221 1 3789999999982 211
Q ss_pred CCCCCCCCCCCcccccccccccccccccHHHHHHHHHHHchhccCCCCCceEEEEECCCCcCCCCCcHHHHHHHHhcCCC
Q 002324 136 NDLDDVGKDTYHHTFFEMLGNWSFGDYFKNEAIEWAWELLTKVYRLPADRLYATYFGGDEKAGLAPDNEARDIWLKFLPA 215 (936)
Q Consensus 136 NDld~VG~t~rHhTfFEMLGnfSFGdYfK~eAI~~awe~Lt~~l~l~~~rL~vTv~~~d~~~~~~~D~Ea~~iW~~~v~~ 215 (936)
- ||--+ -.||.=|..+=--|-++ ..+.=.+-| +.+||||..
T Consensus 77 G--eNPNR-Lq~y~QfQVilKPsP~n-----iQeLYL~SL-~alGid~~~------------------------------ 117 (298)
T 1j5w_A 77 G--ENPNR-LQRYFQYQVIIKPSPEN-----SQELYLESL-EYLGINLKE------------------------------ 117 (298)
T ss_dssp ---CCTTC-CSEEEEEEEEEESCCSS-----HHHHHHHHH-HHTTCCTTT------------------------------
T ss_pred C--CCchh-hhhheeeEEEECCCCcc-----HHHHHHHHH-HHhCCCccc------------------------------
Confidence 1 13332 45666677665555553 111111111 246776653
Q ss_pred CCcccCCCCCCcccCCCCCCCcCceeeEeecCCCCCCCCCCCCCCCCeeEEeeecccccccCCCCccccCCCCccccCch
Q 002324 216 SRVLPFGCKDNFWEMGDTGPCGPCSEIHYDRTGNRDAASLVNNDDPTCIEIWNIVFIQFNRESDGSLKPLPAKHVDTGLG 295 (936)
Q Consensus 216 ~rI~~~g~~dNfW~mG~~GPCGPCsEI~yD~~~~~~~~~~~~~~~~~~lEiWNlVFmq~~r~~~g~l~~Lp~~~IDTGmG 295 (936)
|=||| .+|| ||-=.-|.-|-==|+-.|- +||=- |+=|.+ ..| + ++..-.+.-=+|
T Consensus 118 -HDIRF-VEDn-WEsPTLGAwGLGWEVWldG-----------------MEITQ--FTYFQQ-vGG-i-~c~pv~~EITYG 172 (298)
T 1j5w_A 118 -HDIRF-VEDN-WESPTLGAWGVGWEVWLDG-----------------MEITQ--FTYFQQ-IGG-I-SLKDIPLEITYG 172 (298)
T ss_dssp -SCEEE-EEEC-CEEGGGTEEEEEEEEEETT-----------------EEEEE--EEEEEE-BTT-B-CCSSCCEEEEEE
T ss_pred -CCcee-eccC-CCCCccccccccceeeEcc-----------------eeeeh--hhhhhh-cCC-c-ccCccceeeccc
Confidence 33455 2556 4421124444334444321 55542 333333 223 3 344456677799
Q ss_pred HHHHHHHHhCCCCCccc
Q 002324 296 FERLTSILQNKMSNYDT 312 (936)
Q Consensus 296 LERl~~vlqg~~snydt 312 (936)
|||||+.|||+.|.||.
T Consensus 173 LERiamylQ~vd~vydl 189 (298)
T 1j5w_A 173 LERIAMYLQGVDNVYEV 189 (298)
T ss_dssp HHHHHHHHHTCSSGGGC
T ss_pred HHHHHHHHhCCCceecc
Confidence 99999999999999996
No 14
>4dh4_A MIF; trimer, isomerase; 1.82A {Toxoplasma gondii}
Probab=65.64 E-value=3.3 Score=38.05 Aligned_cols=30 Identities=13% Similarity=0.203 Sum_probs=26.5
Q ss_pred cHHHHHHHHHHHchhccCCCCCceEEEEEC
Q 002324 163 FKNEAIEWAWELLTKVYRLPADRLYATYFG 192 (936)
Q Consensus 163 fK~eAI~~awe~Lt~~l~l~~~rL~vTv~~ 192 (936)
-|++-++---++|.++||+||+|+||.+++
T Consensus 72 ~~~~l~~~i~~~l~~~Lgi~~~riyI~f~d 101 (114)
T 4dh4_A 72 TNCKIAAALSAACERHLGVPKNRIYTTFTN 101 (114)
T ss_dssp HHHHHHHHHHHHHHHHHCCCGGGEEEEEEE
T ss_pred HHHHHHHHHHHHHHHHhCcCcccEEEEEEe
Confidence 467777888899999999999999999975
No 15
>2dq3_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, nationa on protein structural and functional analyses; HET: SSA; 3.00A {Aquifex aeolicus}
Probab=61.01 E-value=13 Score=42.37 Aligned_cols=110 Identities=16% Similarity=0.215 Sum_probs=64.4
Q ss_pred hhHHHHHHHHhhhcCCCeeecCCCcccCCCCCcceecccc--------cccc--ccccCC-CC------------CCCcc
Q 002324 60 ATKVRDTFFKFFEDKNHVNWKSSPVVPVNDPTLLFANAGM--------NQYK--PIFLGT-AD------------PNTQL 116 (936)
Q Consensus 60 ~~eiR~~Fl~fF~~~gH~~v~ssslvp~~DptllFtnAGM--------~qFK--~~flG~-~~------------p~~~~ 116 (936)
-..|.+.++++|.++|++.|-.-.+++.. +|..+|. ..|. +++|.. .. ...++
T Consensus 175 ~~~L~~~~~~~~~~~Gy~ev~tP~l~~~~----l~~~sG~~~~f~~emy~~~~~~l~LrPt~e~~i~~~~~~~i~s~~~L 250 (425)
T 2dq3_A 175 ERALINFMLDLHTKKGYKEICPPHLVKPE----ILIGTGQLPKFEEDLYKCERDNLYLIPTAEVPLTNLYREEILKEENL 250 (425)
T ss_dssp HHHHHHHHHHHHHHTTCEEEECCSEECHH----HHHHHSCTTTTGGGSCBCTTTCCEECSSTHHHHHGGGTTEEEETTTC
T ss_pred HHHHHHHHHHHHHHcCCEEEECCccccHH----HHHhcCCCCcChhhheEecCCeEEEcCCCcHHHHHHHHhhccccccC
Confidence 35677888899998999999776666522 2222232 1221 122211 10 00111
Q ss_pred cccccccccccccccCCCCCCCCCCCCCC----Ccccccccccccccccc-----cHHHHHHHHHHHchhccCCC
Q 002324 117 SKLTRACNTQKCIRAGGKHNDLDDVGKDT----YHHTFFEMLGNWSFGDY-----FKNEAIEWAWELLTKVYRLP 182 (936)
Q Consensus 117 ~~~~r~~~~QkCiR~gGKhNDld~VG~t~----rHhTfFEMLGnfSFGdY-----fK~eAI~~awe~Lt~~l~l~ 182 (936)
--|.+-..+|.|. ....-|++. |=|. |.|..-++|+.= .-+|.|..++++|. .||||
T Consensus 251 --Plrl~~~g~~FR~-----E~~~~Gr~~~Gl~R~re-F~q~E~~~f~~pe~s~~~~~e~i~~~~~il~-~LGL~ 316 (425)
T 2dq3_A 251 --PIYLTAYTPCYRR-----EAGAYGKDIRGIIRQHQ-FDKVELVKIVHPDTSYDELEKLVKDAEEVLQ-LLGLP 316 (425)
T ss_dssp --CEEEEEEEEEECC-----CCSCCSSSCSSSSSCSE-EEEEEEEEEECGGGHHHHHHHHHHHHHHHHH-HHTCC
T ss_pred --CeEEEEecCEecC-----CCCcccccccCcccccc-eEEeeEEEECCHHHHHHHHHHHHHHHHHHHH-HCCCc
Confidence 1378888999995 443333321 4444 456677888832 22578999999996 49998
No 16
>3fwu_A Macrophage migration inhibitory factor-like protein; homotrimer, tautomerase, cytokine; 1.80A {Leishmania major}
Probab=60.08 E-value=5.2 Score=38.19 Aligned_cols=30 Identities=23% Similarity=0.343 Sum_probs=25.3
Q ss_pred cHHHHHHHHHHHchhccCCCCCceEEEEEC
Q 002324 163 FKNEAIEWAWELLTKVYRLPADRLYATYFG 192 (936)
Q Consensus 163 fK~eAI~~awe~Lt~~l~l~~~rL~vTv~~ 192 (936)
-|++-.+---++|.+.|||||+|+||.+++
T Consensus 93 ~n~~~s~~i~~~l~~~LgI~~~riyI~f~d 122 (133)
T 3fwu_A 93 EPEKVTSIVTAAITKECGIVADRIFVLYFS 122 (133)
T ss_dssp HHHHHHHHHHHHHHHHHCCCGGGEEEEEEC
T ss_pred HHHHHHHHHHHHHHHHhCcChhhEEEEEEE
Confidence 356666677899999999999999999975
No 17
>3djh_A Macrophage migration inhibitory factor; homotrimer, cytokine, inflammatory response, isomerase, phosphoprotein; 1.25A {Homo sapiens} SCOP: d.80.1.3 PDB: 1ca7_A* 1ljt_A* 2ooh_A* 2ooz_A* 3b9s_A* 2oow_A* 3ce4_A 3dji_A* 3ijg_A* 3ijj_A* 3smb_A* 3smc_A* 3u18_A* 4f2k_A* 1gd0_A* 1gcz_A* 3jsf_A* 3jsg_A* 3jtu_A* 3l5p_A* ...
Probab=59.44 E-value=5.1 Score=36.91 Aligned_cols=30 Identities=23% Similarity=0.444 Sum_probs=25.0
Q ss_pred cHHHHHHHHHHHchhccCCCCCceEEEEEC
Q 002324 163 FKNEAIEWAWELLTKVYRLPADRLYATYFG 192 (936)
Q Consensus 163 fK~eAI~~awe~Lt~~l~l~~~rL~vTv~~ 192 (936)
-|++-.+---++|.+.||+||+|+||.++.
T Consensus 71 ~n~~~s~~i~~~l~~~Lgi~~~riyI~f~d 100 (114)
T 3djh_A 71 QNRSYSKLLCGLLAERLRISPDRVYINYYD 100 (114)
T ss_dssp HHHHHHHHHHHHHHHHHCCCGGGEEEEEEE
T ss_pred HHHHHHHHHHHHHHHHhCcCcceEEEEEEE
Confidence 455556667789999999999999999985
No 18
>3b64_A Macrophage migration inhibitory factor-like protein; cytokine, MIF, LM1740MIF, lmmif, unknown function; 1.03A {Leishmania major}
Probab=58.26 E-value=6 Score=36.07 Aligned_cols=31 Identities=23% Similarity=0.311 Sum_probs=27.3
Q ss_pred ccHHHHHHHHHHHchhccCCCCCceEEEEEC
Q 002324 162 YFKNEAIEWAWELLTKVYRLPADRLYATYFG 192 (936)
Q Consensus 162 YfK~eAI~~awe~Lt~~l~l~~~rL~vTv~~ 192 (936)
=-|++-++-..++|.+.||+||+|+||++.+
T Consensus 71 eqk~~l~~~i~~~l~~~lgi~~~~v~I~~~e 101 (112)
T 3b64_A 71 SEPEKVTSIVTAAITKECGIVADRIFVLYFS 101 (112)
T ss_dssp THHHHHHHHHHHHHHHHHCCCGGGEEEEEEC
T ss_pred HHHHHHHHHHHHHHHHHhCcCcceEEEEEEE
Confidence 3577788888899999999999999999985
No 19
>3kan_A D-dopachrome tautomerase; immune response, cytokine, cytokine-inhibitor C; HET: RW1; 1.13A {Homo sapiens} SCOP: d.80.1.3 PDB: 1dpt_A* 3ker_A*
Probab=58.03 E-value=5.5 Score=37.01 Aligned_cols=29 Identities=28% Similarity=0.414 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHchhccCCCCCceEEEEEC
Q 002324 164 KNEAIEWAWELLTKVYRLPADRLYATYFG 192 (936)
Q Consensus 164 K~eAI~~awe~Lt~~l~l~~~rL~vTv~~ 192 (936)
+++-.+---++|.+.||+|++|+||.++.
T Consensus 73 n~~~s~~i~~~l~~~Lgi~~~RiyI~f~d 101 (117)
T 3kan_A 73 NRSHSAHFFEFLTKELALGQDRILIRFFP 101 (117)
T ss_dssp HHHHHHHHHHHHHHHHTCCGGGEEEEEEE
T ss_pred HHHHHHHHHHHHHHHhCcCcCeEEEEEEE
Confidence 44555666788999999999999999985
No 20
>3g98_A Alanyl-tRNA synthetase; alpha and beta fold, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase, nucleotide-binding; 1.85A {Aquifex aeolicus}
Probab=57.77 E-value=6 Score=36.47 Aligned_cols=31 Identities=6% Similarity=0.049 Sum_probs=27.3
Q ss_pred cCCccEEEEEccCCCCHHHHHHHHHHHHhhhh
Q 002324 889 SNGKPFCISRVEVGLDAAAVREAVLKVIEQKV 920 (936)
Q Consensus 889 ~~~~~~~v~~~~~~~d~~~Lr~~~d~l~~k~~ 920 (936)
.+++++++.+++ +.|+++||++++.++++++
T Consensus 6 i~g~~~~~~~~~-~~d~~~Lr~~~~~l~~~~~ 36 (111)
T 3g98_A 6 VGDFTLHYGVFE-EVEPEELRNLADMLRQRTK 36 (111)
T ss_dssp ETTEEEEEEEEE-SCCHHHHHHHHHHHTTSSS
T ss_pred ECCEEEEEEEeC-CCCHHHHHHHHHHHHhhcC
Confidence 368999999997 8899999999999998864
No 21
>3fwt_A Macrophage migration inhibitory factor-like protein; homotrimer, tautomerase, cytokine; 1.90A {Leishmania major}
Probab=55.42 E-value=6.3 Score=37.56 Aligned_cols=30 Identities=23% Similarity=0.368 Sum_probs=25.0
Q ss_pred cHHHHHHHHHHHchhccCCCCCceEEEEEC
Q 002324 163 FKNEAIEWAWELLTKVYRLPADRLYATYFG 192 (936)
Q Consensus 163 fK~eAI~~awe~Lt~~l~l~~~rL~vTv~~ 192 (936)
-|++-.+-.-++|.+.|||||+|+||.+++
T Consensus 93 ~n~~~s~~i~~~l~~~LgI~~~rvyI~f~d 122 (133)
T 3fwt_A 93 KPKMMTPRIAAAITKECGIPAERIYVFYYS 122 (133)
T ss_dssp HHHHHHHHHHHHHHHHHCCCGGGEEEEEEE
T ss_pred HHHHHHHHHHHHHHHHhCcChhhEEEEEEE
Confidence 355556667789999999999999999975
No 22
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=53.96 E-value=74 Score=30.63 Aligned_cols=26 Identities=4% Similarity=0.098 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002324 850 IRAKIALLQNQVRKAQKKVAEENLQK 875 (936)
Q Consensus 850 l~~~l~~l~~~~~~~~k~~~~l~~~~ 875 (936)
+..+++.+.+++.++++++..|..++
T Consensus 101 ~~~k~e~~~~e~~~l~~~~~~l~~~~ 126 (138)
T 3hnw_A 101 AQIKAESSAKEIKELKSEINKYQKNI 126 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444433
No 23
>3t5s_A Gilaa.00834.A, macrophage migration inhibitory factor; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; 2.30A {Giardia lamblia}
Probab=53.05 E-value=6.7 Score=37.50 Aligned_cols=29 Identities=14% Similarity=0.249 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHchhccCCCCCceEEEEEC
Q 002324 164 KNEAIEWAWELLTKVYRLPADRLYATYFG 192 (936)
Q Consensus 164 K~eAI~~awe~Lt~~l~l~~~rL~vTv~~ 192 (936)
|++-.+---++|.+.||+||+|+||.+++
T Consensus 94 n~~~s~~i~~~l~~~Lgi~~~riyI~f~d 122 (135)
T 3t5s_A 94 NPSISAAITGCLTQHFKVKPERVYISFNE 122 (135)
T ss_dssp CHHHHHHHHHHHHHHHCCCGGGEEEEEEC
T ss_pred CchHHHHHHHHHHHhcccCccEEEEEecc
Confidence 45556667789999999999999999975
No 24
>2wkb_A Macrophage migration inhibitory factor; cytokine; HET: CME; 1.78A {Plasmodium berghei} PDB: 3gad_A 3gac_A 2wkf_A*
Probab=52.69 E-value=8.3 Score=36.00 Aligned_cols=31 Identities=10% Similarity=0.126 Sum_probs=27.7
Q ss_pred ccHHHHHHHHHHHchhccCCCCCceEEEEEC
Q 002324 162 YFKNEAIEWAWELLTKVYRLPADRLYATYFG 192 (936)
Q Consensus 162 YfK~eAI~~awe~Lt~~l~l~~~rL~vTv~~ 192 (936)
=-|++-++-.-++|.+.||+||+++||++.+
T Consensus 71 eqk~~l~~~i~~~l~~~lgi~~~~v~I~~~e 101 (125)
T 2wkb_A 71 SNNSLLADKITKILSNHLSVKPRRVYIEFRD 101 (125)
T ss_dssp CTHHHHHHHHHHHHHHHHCCCGGGEEEEEEC
T ss_pred HHHHHHHHHHHHHHHHHhCcCcceEEEEEEE
Confidence 4578888888999999999999999999986
No 25
>2xcz_A Possible ATLS1-like light-inducible protein; cytokine, tautomerase, immune system, cyanobacterium; 1.64A {Prochlorococcus marinus}
Probab=51.97 E-value=8 Score=35.36 Aligned_cols=30 Identities=23% Similarity=0.357 Sum_probs=26.8
Q ss_pred cHHHHHHHHHHHchhccCCCCCceEEEEEC
Q 002324 163 FKNEAIEWAWELLTKVYRLPADRLYATYFG 192 (936)
Q Consensus 163 fK~eAI~~awe~Lt~~l~l~~~rL~vTv~~ 192 (936)
=|++-++-.-++|.+.||+||+|+||++.+
T Consensus 72 qk~~l~~~i~~~l~~~lgi~~~~v~I~~~e 101 (115)
T 2xcz_A 72 RTQEVSELVCGHIEQNLGIPADRIYIGFED 101 (115)
T ss_dssp HHHHHHHHHHHHHHHHHCCCGGGEEEEEEE
T ss_pred HHHHHHHHHHHHHHHHhCcCcccEEEEEEE
Confidence 477778888899999999999999999986
No 26
>1hfo_A Migration inhibitory factor; tautomerase; 1.65A {Trichinella spiralis} SCOP: d.80.1.3
Probab=51.73 E-value=8.1 Score=35.14 Aligned_cols=30 Identities=13% Similarity=0.352 Sum_probs=26.4
Q ss_pred cHHHHHHHHHHHchhccCCCCCceEEEEEC
Q 002324 163 FKNEAIEWAWELLTKVYRLPADRLYATYFG 192 (936)
Q Consensus 163 fK~eAI~~awe~Lt~~l~l~~~rL~vTv~~ 192 (936)
=|++-++-.-++|.+.||+||+|+||++.+
T Consensus 71 qk~~l~~~i~~~l~~~lgi~~~~v~I~~~e 100 (113)
T 1hfo_A 71 RNRDHSAKLFDHLNTKLGIPKNRMYIHFVN 100 (113)
T ss_dssp HHHHHHHHHHHHHHHHHCCCGGGEEEEEEE
T ss_pred HHHHHHHHHHHHHHHHhCcCcCeEEEEEEE
Confidence 466778888899999999999999999986
No 27
>1uiz_A MIF, macrophage migration inhibitory factor; cytokine, tautomerase; 2.50A {Xenopus laevis} SCOP: d.80.1.3
Probab=50.11 E-value=8.9 Score=35.04 Aligned_cols=30 Identities=27% Similarity=0.564 Sum_probs=26.3
Q ss_pred cHHHHHHHHHHHchhccCCCCCceEEEEEC
Q 002324 163 FKNEAIEWAWELLTKVYRLPADRLYATYFG 192 (936)
Q Consensus 163 fK~eAI~~awe~Lt~~l~l~~~rL~vTv~~ 192 (936)
-|++-++---++|.+.||+||+|+||++.+
T Consensus 72 qk~~l~~~i~~~l~~~lgi~~~~v~I~~~e 101 (115)
T 1uiz_A 72 QNKSYTKLLCDILTKQLNIPANRVYINYYD 101 (115)
T ss_dssp HHHHHHHHHHHHHHHHHCCCGGGEEEEEEE
T ss_pred HHHHHHHHHHHHHHHHhCcCcceEEEEEEE
Confidence 367777888899999999999999999986
No 28
>2os5_A Acemif; macrophage migration inhibitory factor, cytokine, nematode,; 1.60A {Ancylostoma ceylanicum} PDB: 3rf4_A* 3rf5_A*
Probab=50.08 E-value=8.8 Score=35.38 Aligned_cols=30 Identities=20% Similarity=0.314 Sum_probs=26.4
Q ss_pred cHHHHHHHHHHHchhccCCCCCceEEEEEC
Q 002324 163 FKNEAIEWAWELLTKVYRLPADRLYATYFG 192 (936)
Q Consensus 163 fK~eAI~~awe~Lt~~l~l~~~rL~vTv~~ 192 (936)
-|++-++-.-++|.+.||+||+|+||.+.+
T Consensus 72 qk~~l~~~i~~~l~~~lgi~~~~v~I~~~e 101 (119)
T 2os5_A 72 DNIRHTQKITQFCQDTLKLPKDKVIITYFD 101 (119)
T ss_dssp HHHHHHHHHHHHHHHHHCCCGGGEEEEEEE
T ss_pred HHHHHHHHHHHHHHHHhCcCcccEEEEEEE
Confidence 367778888899999999999999999986
No 29
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=46.75 E-value=28 Score=40.32 Aligned_cols=41 Identities=27% Similarity=0.263 Sum_probs=23.2
Q ss_pred hhHHHHHHHHhhhccCCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002324 825 LLEKTVASLKSKVDGAAIPAPKKADIRAKIALLQNQVRKAQKKVAEENLQK 875 (936)
Q Consensus 825 ~~~~~v~~l~~~l~~~~ip~~~~~~l~~~l~~l~~~~~~~~k~~~~l~~~~ 875 (936)
+|..+|..|+.++. .-..+|+.|+..++++..++++|...+
T Consensus 114 ELRRrIqyLKekVd----------nQlsnIrvLQsnLedq~~kIQRLEvDI 154 (562)
T 3ghg_A 114 DLRSRIEVLKRKVI----------EKVQHIQLLQKNVRAQLVDMKRLEVDI 154 (562)
T ss_dssp HHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555555655553 222566666666666666666655443
No 30
>1otf_A 4-oxalocrotonate tautomerase; isomerase; 1.90A {Pseudomonas SP} SCOP: d.80.1.1 PDB: 4otc_A 4ota_A 4otb_A 1bjp_A 2fm7_A
Probab=42.02 E-value=15 Score=29.29 Aligned_cols=30 Identities=17% Similarity=0.132 Sum_probs=25.5
Q ss_pred cHHHHHHHHHHHchhccCCCCCceEEEEEC
Q 002324 163 FKNEAIEWAWELLTKVYRLPADRLYATYFG 192 (936)
Q Consensus 163 fK~eAI~~awe~Lt~~l~l~~~rL~vTv~~ 192 (936)
-|++-++-..+.|.+.||+|++++||.+.+
T Consensus 15 ~k~~l~~~i~~~l~~~lg~p~~~v~v~i~e 44 (62)
T 1otf_A 15 QKETLIRQVSEAMANSLDAPLERVRVLITE 44 (62)
T ss_dssp HHHHHHHHHHHHHHHHHTCCGGGCEEEEEE
T ss_pred HHHHHHHHHHHHHHHHhCcCcccEEEEEEE
Confidence 466667777888999999999999999975
No 31
>2opa_A Probable tautomerase YWHB; homohexamer, 4-oxalocrotonate tautomerase, inhibitor, 2-FLUO hydroxycinnamate, isomerase; HET: FHC; 2.40A {Bacillus subtilis} PDB: 2op8_A*
Probab=41.88 E-value=15 Score=29.23 Aligned_cols=30 Identities=10% Similarity=0.023 Sum_probs=25.4
Q ss_pred cHHHHHHHHHHHchhccCCCCCceEEEEEC
Q 002324 163 FKNEAIEWAWELLTKVYRLPADRLYATYFG 192 (936)
Q Consensus 163 fK~eAI~~awe~Lt~~l~l~~~rL~vTv~~ 192 (936)
-|++-++-.-+.|.+.||+|++++||.+.+
T Consensus 15 qk~~l~~~i~~~l~~~lg~~~~~v~V~i~e 44 (61)
T 2opa_A 15 QKRNLVEKVTEAVKETTGASEEKIVVFIEE 44 (61)
T ss_dssp HHHHHHHHHHHHHHHHHCCCGGGCEEEEEE
T ss_pred HHHHHHHHHHHHHHHHhCcCcCeEEEEEEE
Confidence 466667777888999999999999999975
No 32
>1gyx_A YDCE, B1461, hypothetical protein YDCE; tautomerase, isomerase, complete proteo; HET: EPE; 1.35A {Escherichia coli} SCOP: d.80.1.1 PDB: 1gyj_A* 1gyy_A*
Probab=41.83 E-value=31 Score=29.15 Aligned_cols=43 Identities=9% Similarity=0.076 Sum_probs=32.6
Q ss_pred cHHHHHHHHHHHchhccCCCCCceEEEEECCCCcCCCCCcHHHHHHHHhc
Q 002324 163 FKNEAIEWAWELLTKVYRLPADRLYATYFGGDEKAGLAPDNEARDIWLKF 212 (936)
Q Consensus 163 fK~eAI~~awe~Lt~~l~l~~~rL~vTv~~~d~~~~~~~D~Ea~~iW~~~ 212 (936)
-|++-++-.-+.|.+.||+|++++||.+.+ +++++=++ +|...
T Consensus 16 qk~~L~~~l~~~l~~~lgip~~~v~V~i~e------~~~~~w~~-v~~~~ 58 (76)
T 1gyx_A 16 QKAALAADITDVIIRHLNSKDSSISIALQQ------IQPESWQA-IWDAE 58 (76)
T ss_dssp HHHHHHHHHHHHHHHHHTCCGGGCEEEEEE------CCGGGHHH-HHHHT
T ss_pred HHHHHHHHHHHHHHHHhCcCCceEEEEEEE------eChHHEEE-EEchh
Confidence 456667777888999999999999999986 34556666 66543
No 33
>3n4h_A Putative tautomerase; CG10062, CIS-3-chloroacrylic acid dehalogenase, tautomerase superfamily, beta-alpha-beta motif, hydrolase; HET: PR7; 2.02A {Corynebacterium glutamicum} PDB: 3n4d_A* 3n4g_A
Probab=41.52 E-value=14 Score=35.38 Aligned_cols=54 Identities=15% Similarity=0.264 Sum_probs=28.9
Q ss_pred cHHHHHHHHHHHchhccCCCCCceEEEEECCCCcC----C-CCCcHHHHHHHHhcCCCC
Q 002324 163 FKNEAIEWAWELLTKVYRLPADRLYATYFGGDEKA----G-LAPDNEARDIWLKFLPAS 216 (936)
Q Consensus 163 fK~eAI~~awe~Lt~~l~l~~~rL~vTv~~~d~~~----~-~~~D~Ea~~iW~~~v~~~ 216 (936)
-|++-++-..+.|.+.+|+|++++||++.+-+... | +.+|....+.|.+.+|++
T Consensus 77 qk~~l~~~l~~~l~~~lgi~~~~v~V~i~E~~~~~wg~gG~~~~~~g~e~~W~~~~~~~ 135 (148)
T 3n4h_A 77 QKEELLLRLTQEIALILGIPNEEVWVYITEIPGSNMTEYGRLLMEPGEEEKWFNSLPEG 135 (148)
T ss_dssp HHHHHHHHHHHHHHHHHTCCGGGEEEEEEEECGGGCCCSSCC-----------------
T ss_pred HHHHHHHHHHHHHHHHhCcCcCcEEEEEEEcCHHHeeECCEECCCCcchHHHHHhCcHH
Confidence 47778888889999999999999999998643311 2 455666666777766553
No 34
>1nnh_A Asparaginyl-tRNA synthetase-related peptide; structural genomics, PSI, protein structure initiative, southeast COLL for structural genomics; 1.65A {Pyrococcus furiosus} SCOP: d.104.1.1 PDB: 3p8t_A 3p8v_A 3p8y_A 3reu_A* 3rex_A* 3rl6_A*
Probab=40.24 E-value=11 Score=40.62 Aligned_cols=108 Identities=15% Similarity=0.142 Sum_probs=62.8
Q ss_pred hHHHHHHHHhhhcCCCeeecCCCcccCCCCCcceec-----cccccc----cccccCCCCCCC-----cccccccccccc
Q 002324 61 TKVRDTFFKFFEDKNHVNWKSSPVVPVNDPTLLFAN-----AGMNQY----KPIFLGTADPNT-----QLSKLTRACNTQ 126 (936)
Q Consensus 61 ~eiR~~Fl~fF~~~gH~~v~ssslvp~~DptllFtn-----AGM~qF----K~~flG~~~p~~-----~~~~~~r~~~~Q 126 (936)
+.|.+.+-+||.++|-..|..--+.+.+| ++-.. |=|.++ ++++|-+. |.- -.+...|+-..-
T Consensus 19 s~i~~~ir~~f~~~GF~EVeTP~l~~~~~--~~~~~~~~e~a~~f~~~~~~~~~~L~~S-pe~~~~~l~~~g~~rvf~ig 95 (294)
T 1nnh_A 19 TKILEYMTDFFVKEGFKWLLPVIISPITD--PLWPDPAGEGMEPAEVEIYGVKMRLTHS-MILHKQLAIAMGLKKIFVLS 95 (294)
T ss_dssp HHHHHHHHHHHHHTTCEEECCCCEESCCC--CCCSCTTCCCCCCCEEEETTEEEEECSC-SHHHHHHHHHTTCCEEEEEE
T ss_pred HHHHHHHHHHHHHCCCEEEECCEEEEccc--hhccCCCCCcceeEEEEcCCCCEEeccC-hHHHHHHHhhcCccceEEEE
Confidence 56778888999999999887554444312 11100 112221 12334211 100 001246888899
Q ss_pred cccccCCCCCCCCCCCCCCCccccccccc-ccccccccHHHHHHHHHHHchhcc
Q 002324 127 KCIRAGGKHNDLDDVGKDTYHHTFFEMLG-NWSFGDYFKNEAIEWAWELLTKVY 179 (936)
Q Consensus 127 kCiR~gGKhNDld~VG~t~rHhTfFEMLG-nfSFGdYfK~eAI~~awe~Lt~~l 179 (936)
+|.|. +=+.. .|+||..=|-|++ -.+|.|| +|.+..+.+|+...+
T Consensus 96 ~~FR~-----E~pq~-~~~RH~~EFtqle~e~~~~~~--~~l~~~~e~l~~~l~ 141 (294)
T 1nnh_A 96 PNIRL-----ESRQK-DDGRHAYEFTQLDFEVERAKM--EDIMRLIERLVYGLF 141 (294)
T ss_dssp EEECC-----CCGGG-CSSSCCSEEEEEEEEEETCCH--HHHHHHHHHHHHHHH
T ss_pred ccEeC-----CCCCC-CCCccccceeEEEEEecCCCH--HHHHHHHHHHHHHHH
Confidence 99995 42112 3579997788886 4445564 588999998887654
No 35
>3abf_A 4-oxalocrotonate tautomerase; isomerase; 1.94A {Thermus thermophilus}
Probab=39.68 E-value=20 Score=28.81 Aligned_cols=29 Identities=14% Similarity=0.264 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHchhccCCCCCceEEEEEC
Q 002324 164 KNEAIEWAWELLTKVYRLPADRLYATYFG 192 (936)
Q Consensus 164 K~eAI~~awe~Lt~~l~l~~~rL~vTv~~ 192 (936)
|++-++-.-+.|.+.+|+|++++||.+.+
T Consensus 17 k~~l~~~lt~~l~~~lg~~~~~v~V~i~e 45 (64)
T 3abf_A 17 KRELVRRLTEMASRLLGEPYEEVRVILYE 45 (64)
T ss_dssp HHHHHHHHHHHHHHHTTCCGGGEEEEEEE
T ss_pred HHHHHHHHHHHHHHHhCCCcccEEEEEEE
Confidence 55566777788889999999999999976
No 36
>1vcs_A Vesicle transport through interaction with T- snares homolog 1A; HABC domain, VTI1, UP and DOWN three helix bundle, LEFT-handed twist; NMR {Mus musculus} SCOP: a.47.2.1
Probab=38.08 E-value=1.6e+02 Score=26.71 Aligned_cols=32 Identities=9% Similarity=0.238 Sum_probs=25.9
Q ss_pred CCCCCChhhHHHHHHHHHHHHHHHHHHHHHHH
Q 002324 841 AIPAPKKADIRAKIALLQNQVRKAQKKVAEEN 872 (936)
Q Consensus 841 ~ip~~~~~~l~~~l~~l~~~~~~~~k~~~~l~ 872 (936)
.+|...+..+..+|...+.++..+++++++++
T Consensus 63 ~~p~~~R~~~~~klr~Yk~dL~~lk~elk~~~ 94 (102)
T 1vcs_A 63 EIPPQSRGMYSNRMRSYKQEMGKLETDFKRSR 94 (102)
T ss_dssp TSCTTTHHHHHHHHHHHHHHHHHHHHHTHHHH
T ss_pred hCCHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45788889999999999888888888877644
No 37
>3m20_A 4-oxalocrotonate tautomerase, putative; DMPI, thermophIle, beta-alpha-beta, catalytic proline, isomerase; 2.37A {Archaeoglobus fulgidus}
Probab=38.07 E-value=29 Score=28.15 Aligned_cols=30 Identities=13% Similarity=0.147 Sum_probs=25.1
Q ss_pred cHHHHHHHHHHHchhccCCCCCceEEEEEC
Q 002324 163 FKNEAIEWAWELLTKVYRLPADRLYATYFG 192 (936)
Q Consensus 163 fK~eAI~~awe~Lt~~l~l~~~rL~vTv~~ 192 (936)
-|++-++-.-+.+.+++|+|++.++|.+.+
T Consensus 14 qK~~L~~~it~~~~~~lg~~~~~v~V~i~E 43 (62)
T 3m20_A 14 KKREFVERLTSVAAEIYGMDRSAITILIHE 43 (62)
T ss_dssp HHHHHHHHHHHHHHHHHTCCTTSCEEEEEC
T ss_pred HHHHHHHHHHHHHHHHhCcCcceEEEEEEE
Confidence 366667777788888999999999999976
No 38
>4dzn_A Coiled-coil peptide CC-PIL; de novo protein; HET: PHI; 1.59A {Synthetic} PDB: 4dzm_A* 4dzl_A* 4dzk_A 1u0i_A 1u0i_B
Probab=34.84 E-value=60 Score=23.04 Aligned_cols=24 Identities=25% Similarity=0.383 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 002324 854 IALLQNQVRKAQKKVAEENLQKAV 877 (936)
Q Consensus 854 l~~l~~~~~~~~k~~~~l~~~~a~ 877 (936)
+..|..++..++|++.+++.+++.
T Consensus 4 iaalkqeiaalkkeiaalkfeiaa 27 (33)
T 4dzn_A 4 IAALKQEIAALKKEIAALKFEIAA 27 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666777777777777776653
No 39
>3m21_A Probable tautomerase HP_0924; 4-oxalocrotonate tautomerase, catalytic proline, hexamer, BE beta, isomerase; 1.90A {Helicobacter pylori} PDB: 2orm_A
Probab=33.68 E-value=28 Score=28.61 Aligned_cols=29 Identities=21% Similarity=0.146 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHchhccCCCCCceEEEEEC
Q 002324 164 KNEAIEWAWELLTKVYRLPADRLYATYFG 192 (936)
Q Consensus 164 K~eAI~~awe~Lt~~l~l~~~rL~vTv~~ 192 (936)
|++-++-..+.|.+.||+|++.+||.+.+
T Consensus 19 K~~l~~~lt~~l~~~lg~p~~~v~V~i~e 47 (67)
T 3m21_A 19 KQQLIEGVSDLMVKVLNKNKASIVVIIDE 47 (67)
T ss_dssp HHHHHHHHHHHHHHHHCCCGGGCEEEEEE
T ss_pred HHHHHHHHHHHHHHHHCcCcccEEEEEEE
Confidence 66667777888889999999999999976
No 40
>2l5g_B Putative uncharacterized protein NCOR2, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=33.21 E-value=1e+02 Score=23.83 Aligned_cols=30 Identities=3% Similarity=0.249 Sum_probs=22.0
Q ss_pred ChhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002324 846 KKADIRAKIALLQNQVRKAQKKVAEENLQK 875 (936)
Q Consensus 846 ~~~~l~~~l~~l~~~~~~~~k~~~~l~~~~ 875 (936)
++++|..+++++-+++.+.++++..++.++
T Consensus 3 tk~~l~qkI~kVdrEI~Kte~kI~~lqkKl 32 (42)
T 2l5g_B 3 SKEELIQNMDRVDREITMVEQQISKLKKKQ 32 (42)
T ss_dssp SSSHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467777777777777777777777766654
No 41
>1kd8_B GABH BLL, GCN4 acid base heterodimer base-D12LA16L; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kd9_B 1kdd_B
Probab=33.10 E-value=76 Score=23.70 Aligned_cols=28 Identities=25% Similarity=0.383 Sum_probs=20.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002324 849 DIRAKIALLQNQVRKAQKKVAEENLQKA 876 (936)
Q Consensus 849 ~l~~~l~~l~~~~~~~~k~~~~l~~~~a 876 (936)
+|.+++++|..+..+++.+...|+.-+.
T Consensus 5 QLE~KVEeLl~~~~~Le~eV~RLk~ll~ 32 (36)
T 1kd8_B 5 QLKAKVEELKSKLWHLKNKVARLKKKNA 32 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHhc
Confidence 5667777787777778777777766543
No 42
>3twe_A Alpha4H; unknown function; HET: PGE; 1.36A {Synthetic} PDB: 3twf_A* 4g4m_A*
Probab=32.37 E-value=56 Score=22.23 Aligned_cols=22 Identities=27% Similarity=0.451 Sum_probs=13.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHH
Q 002324 848 ADIRAKIALLQNQVRKAQKKVA 869 (936)
Q Consensus 848 ~~l~~~l~~l~~~~~~~~k~~~ 869 (936)
++|...++.|++.++++.|++.
T Consensus 4 delykeledlqerlrklrkklr 25 (27)
T 3twe_A 4 DELYKELEDLQERLRKLRKKLR 25 (27)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhc
Confidence 4566666777776666666543
No 43
>1mww_A Hypothetical protein HI1388.1; structural genomics, structure 2 function project, S2F, unknown function; HET: GLU; 2.08A {Haemophilus influenzae} SCOP: d.80.1.4
Probab=30.76 E-value=27 Score=32.42 Aligned_cols=30 Identities=17% Similarity=0.052 Sum_probs=26.2
Q ss_pred cHHHHHHHHHHHchhccCCCCCceEEEEEC
Q 002324 163 FKNEAIEWAWELLTKVYRLPADRLYATYFG 192 (936)
Q Consensus 163 fK~eAI~~awe~Lt~~l~l~~~rL~vTv~~ 192 (936)
-|++-++-.-+.|.+.||+|++++||.+.+
T Consensus 74 qK~~l~~~l~~~l~~~lg~~~~~v~V~i~e 103 (128)
T 1mww_A 74 TKKRLIKMLFSELEYKLGIRAHDVEITIKE 103 (128)
T ss_dssp HHHHHHHHHHHHHHHHHCCCGGGEEEEEEE
T ss_pred HHHHHHHHHHHHHHHHhCcChhhEEEEEEE
Confidence 466777888888999999999999999976
No 44
>1eov_A ASPRS, aspartyl-tRNA synthetase; aminoacyl tRNA synthetase, tRNA ligase, APO-enzyme, OB-fold,; 2.30A {Saccharomyces cerevisiae} SCOP: b.40.4.1 d.104.1.1 PDB: 1asy_A* 1asz_A*
Probab=29.42 E-value=46 Score=38.49 Aligned_cols=99 Identities=19% Similarity=0.317 Sum_probs=59.7
Q ss_pred HHHHHHHHhhhcCCCeeecCCCcccCCCCCcceecccccccc------ccccCCCCCCC--cc--ccccccccccccccc
Q 002324 62 KVRDTFFKFFEDKNHVNWKSSPVVPVNDPTLLFANAGMNQYK------PIFLGTADPNT--QL--SKLTRACNTQKCIRA 131 (936)
Q Consensus 62 eiR~~Fl~fF~~~gH~~v~ssslvp~~DptllFtnAGM~qFK------~~flG~~~p~~--~~--~~~~r~~~~QkCiR~ 131 (936)
.|-+.+-+||.++|-..|..--|.+.. +.+|-..|+ +++|-+.+--+ -+ +.+.|+-..-+|.|.
T Consensus 183 ~i~~~ir~~~~~~gF~EV~TPil~~~~------~~~ga~~f~~~~~~~~~~L~~Spql~~k~l~~~g~~rvy~ig~~FR~ 256 (487)
T 1eov_A 183 GVCELFREYLATKKFTEVHTPKLLGAP------SEGGSSVFEVTYFKGKAYLAQSPQFNKQQLIVADFERVYEIGPVFRA 256 (487)
T ss_dssp HHHHHHHHHHHHTTCEECCCCSEESSC------SSSSSCCCEEEETTEEEEECSCTHHHHHHHHHTTCCEEEEEEEEECC
T ss_pred HHHHHHHHHHHhCCcEEEeCCEEEEec------CCCCcccceeccCCccEEcccChHHHHHHHHhcCCCceEEEeccEec
Confidence 455566789999999988765555421 222222222 33443221000 00 124677888899997
Q ss_pred CCCCCCCCCCCCCCCcccccccccc-cccc-cccHHHHHHHHHHHch
Q 002324 132 GGKHNDLDDVGKDTYHHTFFEMLGN-WSFG-DYFKNEAIEWAWELLT 176 (936)
Q Consensus 132 gGKhNDld~VG~t~rHhTfFEMLGn-fSFG-dYfK~eAI~~awe~Lt 176 (936)
. +. .|.||..=|-||+- .||| || +|.+..+-+++.
T Consensus 257 E-------~~-~~~Rh~pEFt~le~e~af~~~~--~dlm~l~E~ll~ 293 (487)
T 1eov_A 257 E-------NS-NTHRHMTEFTGLDMEMAFEEHY--HEVLDTLSELFV 293 (487)
T ss_dssp C-------CC-CCTTCCSEEEEEEEEEECSSCT--HHHHHHHHHHHH
T ss_pred C-------CC-CCCccchhhhhhhhhhhhhcCH--HHHHHHHHHHHH
Confidence 3 33 37899988999987 7898 57 566666655554
No 45
>1kd8_A GABH AIV, GCN4 acid base heterodimer acid-D12IA16V; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kdd_A 1kd9_A
Probab=28.38 E-value=1e+02 Score=23.03 Aligned_cols=28 Identities=18% Similarity=0.324 Sum_probs=20.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002324 849 DIRAKIALLQNQVRKAQKKVAEENLQKA 876 (936)
Q Consensus 849 ~l~~~l~~l~~~~~~~~k~~~~l~~~~a 876 (936)
+|.++++.|..+..+++.+..+|+.-+.
T Consensus 5 QLE~kVEeLl~~~~~Le~EV~RL~~ll~ 32 (36)
T 1kd8_A 5 QLEAEVEEIESEVWHLENEVARLEKENA 32 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHhc
Confidence 5667777777777777777777765544
No 46
>2aal_A Malonate semialdehyde decarboxylase; tautomerase superfamily, beta-alpha-beta, homotrimeric, LYAS; 1.65A {Pseudomonas pavonaceae} SCOP: d.80.1.6 PDB: 2aag_A 2aaj_A
Probab=28.05 E-value=32 Score=32.10 Aligned_cols=29 Identities=10% Similarity=0.003 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHchhccCCCCCceEEEEEC
Q 002324 164 KNEAIEWAWELLTKVYRLPADRLYATYFG 192 (936)
Q Consensus 164 K~eAI~~awe~Lt~~l~l~~~rL~vTv~~ 192 (936)
|++-++-.-+.|.+.+|+|++++||.+.+
T Consensus 81 K~~l~~~l~~~l~~~lg~~~~~v~I~i~e 109 (131)
T 2aal_A 81 KVCFYKLLTGALERDCGISPDDVIVALVE 109 (131)
T ss_dssp HHHHHHHHHHHHHHHHCCCGGGEEEEEEE
T ss_pred HHHHHHHHHHHHHHHhCcCcccEEEEEEE
Confidence 77888888899999999999999999976
No 47
>4gyx_A Type III collagen fragment in A HOST peptide STAB the cysteine knot; collagen triple helix, type III collagen cysteine knot, BLOO clotting; 1.49A {Homo sapiens}
Probab=27.31 E-value=22 Score=24.90 Aligned_cols=10 Identities=60% Similarity=1.427 Sum_probs=7.3
Q ss_pred CCCCCCcCce
Q 002324 231 GDTGPCGPCS 240 (936)
Q Consensus 231 G~~GPCGPCs 240 (936)
|+.||-|||-
T Consensus 19 gppgppgpcc 28 (31)
T 4gyx_A 19 GPPGPPGPCC 28 (31)
T ss_dssp CCCCCCCCCC
T ss_pred CCCCCCCCCc
Confidence 5677888884
No 48
>3mb2_A 4-oxalocrotonate tautomerase family enzyme - ALPH; trans-3-chloroacrylic acid dehalogenase, CAAD, dehalogenase, hydrolase; 2.41A {Chloroflexus aurantiacus}
Probab=27.15 E-value=38 Score=28.26 Aligned_cols=30 Identities=10% Similarity=-0.005 Sum_probs=25.2
Q ss_pred cHHHHHHHHHHHchhccCCCCCceEEEEEC
Q 002324 163 FKNEAIEWAWELLTKVYRLPADRLYATYFG 192 (936)
Q Consensus 163 fK~eAI~~awe~Lt~~l~l~~~rL~vTv~~ 192 (936)
-|++-++-.-+.+.+.+|+|++.+||.+.+
T Consensus 16 qK~~L~~~it~~l~~~lg~p~~~v~V~i~e 45 (72)
T 3mb2_A 16 QKAELARALSAAAAAAFDVPLAEVRLIIQE 45 (72)
T ss_dssp HHHHHHHHHHHHHHHHHTCCGGGEEEEEEE
T ss_pred HHHHHHHHHHHHHHHHhCCCcccEEEEEEE
Confidence 366667777888889999999999999875
No 49
>2oxj_A Hybrid alpha/beta peptide based on the GCN4-P1 Se heptad positions B and F substituted...; helix bundle, foldamer, unknown function; HET: B3K B3D B3E B3S B3Y B3X B3A BAL; 2.00A {Synthetic} PDB: 2oxk_A*
Probab=26.72 E-value=96 Score=22.89 Aligned_cols=25 Identities=12% Similarity=0.134 Sum_probs=19.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH
Q 002324 849 DIRAKIALLQNQVRKAQKKVAEENL 873 (936)
Q Consensus 849 ~l~~~l~~l~~~~~~~~k~~~~l~~ 873 (936)
+|.++++.|..+..+++++...|+.
T Consensus 5 QLE~kVEeLl~~n~~Le~eV~rLk~ 29 (34)
T 2oxj_A 5 QLEXKVXELLXKNXHLEXEVXRLKX 29 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 6677888888888888888877664
No 50
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=26.45 E-value=65 Score=26.06 Aligned_cols=20 Identities=15% Similarity=0.363 Sum_probs=10.2
Q ss_pred hHHHHHHHHHHHHHHHHHHH
Q 002324 849 DIRAKIALLQNQVRKAQKKV 868 (936)
Q Consensus 849 ~l~~~l~~l~~~~~~~~k~~ 868 (936)
+|+.+++.|.+++.++++++
T Consensus 30 eLk~k~~~L~~~~~el~~~l 49 (53)
T 2yy0_A 30 EMKEKYEAIVEENKKLKAKL 49 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 55555555555555544443
No 51
>2x4k_A 4-oxalocrotonate tautomerase; isomerase; 1.10A {Staphylococcus aureus}
Probab=26.25 E-value=39 Score=26.60 Aligned_cols=29 Identities=3% Similarity=-0.107 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHchhccCCCCCceEEEEEC
Q 002324 164 KNEAIEWAWELLTKVYRLPADRLYATYFG 192 (936)
Q Consensus 164 K~eAI~~awe~Lt~~l~l~~~rL~vTv~~ 192 (936)
|++-++-..+.|.+.+|+|++++||.+.+
T Consensus 19 k~~l~~~l~~~l~~~lg~p~~~v~v~i~e 47 (63)
T 2x4k_A 19 LKNLVSEVTDAVEKTTGANRQAIHVVIEE 47 (63)
T ss_dssp HHHHHHHHHHHHHHHHCCCGGGCEEEEEE
T ss_pred HHHHHHHHHHHHHHHhCcCcccEEEEEEE
Confidence 55556667788889999999999999876
No 52
>3m48_A General control protein GCN4; leucine zipper, synthetic peptide, alpha helix, activa amino-acid biosynthesis, DNA-binding, nucleus; 1.45A {Synthetic} PDB: 3i1g_A 2ahp_A* 2o7h_A
Probab=26.10 E-value=87 Score=23.03 Aligned_cols=25 Identities=20% Similarity=0.221 Sum_probs=19.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH
Q 002324 849 DIRAKIALLQNQVRKAQKKVAEENL 873 (936)
Q Consensus 849 ~l~~~l~~l~~~~~~~~k~~~~l~~ 873 (936)
+|.+++++|..+..+++.++..|+.
T Consensus 4 QLE~kVEeLl~~n~~Le~EV~RLk~ 28 (33)
T 3m48_A 4 QLEAKVEELLSKNWNLENEVARLKK 28 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 5677888888888888888877654
No 53
>3a5y_A GENX, putative lysyl-tRNA synthetase; aminoacyl-tRNA synthetase paralog, translation, lysyl- synthetase, lysyladenylate analog; HET: KAA; 1.90A {Escherichia coli} PDB: 3a5z_A* 3g1z_A*
Probab=24.62 E-value=27 Score=38.61 Aligned_cols=104 Identities=15% Similarity=0.262 Sum_probs=62.8
Q ss_pred hHHHHHHHHhhhcCCCeeecCCCcccCCCCCcceeccccccccccccCC--CC------CCCc--------ccccccccc
Q 002324 61 TKVRDTFFKFFEDKNHVNWKSSPVVPVNDPTLLFANAGMNQYKPIFLGT--AD------PNTQ--------LSKLTRACN 124 (936)
Q Consensus 61 ~eiR~~Fl~fF~~~gH~~v~ssslvp~~DptllFtnAGM~qFK~~flG~--~~------p~~~--------~~~~~r~~~ 124 (936)
++|-+.+-+||.++|-..|..--|.+.. +. .|+..+|+-.|.|. .. +.+| -+.+.|+-.
T Consensus 40 s~i~~~iR~ff~~~gF~EVeTPiL~~~~-~~----~a~~~~F~~~~~~~~~~~~~~~yL~~Spql~~k~l~~~g~~rvyq 114 (345)
T 3a5y_A 40 AAIMAEIRRFFADRGVLEVETPCMSQAT-VT----DIHLVPFETRFVGPGHSQGMNLWLMTSPEYHMKRLLVAGCGPVFQ 114 (345)
T ss_dssp HHHHHHHHHHHHHTTCEECCCCSEESSC-CC----CTTCCCCEEEECCSTTSCCEEEEECSCSHHHHHHHHHTTCCSEEE
T ss_pred HHHHHHHHHHHHHCCCEEEECCEEEecC-CC----CCccceEEEEecCcccccCCCEeecCCHHHHHHHHHHcCCCcEEE
Confidence 3555667789999999998765555432 11 23344554322220 00 0111 013567888
Q ss_pred cccccccCCCCCCCCCCCCCCCccccccccc-ccccccccHHHHHHHHHHHchhccC
Q 002324 125 TQKCIRAGGKHNDLDDVGKDTYHHTFFEMLG-NWSFGDYFKNEAIEWAWELLTKVYR 180 (936)
Q Consensus 125 ~QkCiR~gGKhNDld~VG~t~rHhTfFEMLG-nfSFGdYfK~eAI~~awe~Lt~~l~ 180 (936)
.-+|.|.. +. |.||..=|-||- -.+|.|| ++.+..+=+++..+++
T Consensus 115 Ig~~FR~E-------~~--~~rH~pEFt~lE~e~af~d~--~d~m~~~E~li~~v~~ 160 (345)
T 3a5y_A 115 LCRSFRNE-------EM--GRYHNPEFTMLEWYRPHYDM--YRLMNEVDDLLQQVLD 160 (345)
T ss_dssp EEEEECCC-------CC--BTTBCSEEEEEEEEEETCCH--HHHHHHHHHHHHHHHC
T ss_pred EEcceeCC-------CC--cccccchhheeeeeeeCCCH--HHHHHHHHHHHHHHHc
Confidence 89999963 33 799999999985 4577776 4566666666665554
No 54
>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}
Probab=24.59 E-value=1.4e+02 Score=23.01 Aligned_cols=18 Identities=17% Similarity=0.412 Sum_probs=10.0
Q ss_pred hHHHHHHHHHHHHHHHHH
Q 002324 849 DIRAKIALLQNQVRKAQK 866 (936)
Q Consensus 849 ~l~~~l~~l~~~~~~~~k 866 (936)
+|.++|..|+.+..-+++
T Consensus 21 eLEervstLq~EN~mLRq 38 (42)
T 2oqq_A 21 ELEERLSTLQNENQMLRH 38 (42)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhHHHHHH
Confidence 555666666655544443
No 55
>1jcd_A Major outer membrane lipoprotein; protein folding, coiled coil, helix capping, alanine-zipper, membrane protein; 1.30A {Escherichia coli} SCOP: h.1.16.1 PDB: 1eq7_A 1t8z_A* 2guv_A 2gus_A 1jcc_A 1kfn_A 1kfm_A
Probab=23.92 E-value=2.1e+02 Score=23.17 Aligned_cols=26 Identities=15% Similarity=0.107 Sum_probs=15.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002324 849 DIRAKIALLQNQVRKAQKKVAEENLQ 874 (936)
Q Consensus 849 ~l~~~l~~l~~~~~~~~k~~~~l~~~ 874 (936)
.|-.+|.+|..++..++-+++..+.+
T Consensus 15 ~L~~kVdqLssdV~al~~~v~~ak~e 40 (52)
T 1jcd_A 15 TANAKADQASNDANAARSDAQAAKDD 40 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55566666666666666555544443
No 56
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=23.27 E-value=4.8e+02 Score=24.86 Aligned_cols=29 Identities=7% Similarity=0.086 Sum_probs=18.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002324 849 DIRAKIALLQNQVRKAQKKVAEENLQKAV 877 (936)
Q Consensus 849 ~l~~~l~~l~~~~~~~~k~~~~l~~~~a~ 877 (936)
.+..+.+.|..++.++.+++..++.++..
T Consensus 72 k~~~~~~~L~~~l~~~~kE~~~lK~el~~ 100 (138)
T 3hnw_A 72 KAKKMADSLSLDIENKDKEIYDLKHELIA 100 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556666666666666666666665544
No 57
>1yke_B RNA polymerase II holoenzyme component SRB7; gene regulation; 3.30A {Saccharomyces cerevisiae} SCOP: a.252.1.1
Probab=22.99 E-value=2.4e+02 Score=27.45 Aligned_cols=43 Identities=14% Similarity=0.135 Sum_probs=29.7
Q ss_pred HHHHhhhccCCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 002324 831 ASLKSKVDGAAIPAPKKADIRAKIALLQNQVRKAQKKVAEENL 873 (936)
Q Consensus 831 ~~l~~~l~~~~ip~~~~~~l~~~l~~l~~~~~~~~k~~~~l~~ 873 (936)
+++...+.+.+-.-.+.++-..+|.+|++++++..+++++...
T Consensus 71 kqIe~LIdsLPg~~~seeeQ~~ri~~Le~E~~~~~~el~~~v~ 113 (151)
T 1yke_B 71 RQINKLIDSLPGVDVSAEEQLRKIDMLQKKLVEVEDEKIEAIK 113 (151)
T ss_dssp HHHHHHHHHCTTSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333444444467888899999999999999888775443
No 58
>1ykh_B RNA polymerase II holoenzyme component SRB7; gene regulation; 3.00A {Saccharomyces cerevisiae} SCOP: a.252.1.1
Probab=22.89 E-value=2.7e+02 Score=26.45 Aligned_cols=42 Identities=14% Similarity=0.143 Sum_probs=29.1
Q ss_pred HHHhhhccCCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 002324 832 SLKSKVDGAAIPAPKKADIRAKIALLQNQVRKAQKKVAEENL 873 (936)
Q Consensus 832 ~l~~~l~~~~ip~~~~~~l~~~l~~l~~~~~~~~k~~~~l~~ 873 (936)
.+...+.+.+-.-.+.++-..+|.+|++++++..++++....
T Consensus 72 qIe~LIdsLP~~~~see~Q~~ri~~L~~E~~~~~~el~~~v~ 113 (132)
T 1ykh_B 72 QINKLIDSLPGVDVSAEEQLRKIDMLQKKLVEVEDEKIEAIK 113 (132)
T ss_dssp HHHHHHHHSTTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333434444467888899999999999998888875443
No 59
>1wyd_A Hypothetical aspartyl-tRNA synthetase; archaea, LIGA; HET: EPE; 2.30A {Sulfolobus tokodaii}
Probab=22.30 E-value=32 Score=39.15 Aligned_cols=102 Identities=16% Similarity=0.299 Sum_probs=56.9
Q ss_pred hHHHHHHHHhhhcCCCeeecCCCcccCC-CC--Ccceeccccccc-cccccCCCCCCCc----ccccccccccccccccC
Q 002324 61 TKVRDTFFKFFEDKNHVNWKSSPVVPVN-DP--TLLFANAGMNQY-KPIFLGTADPNTQ----LSKLTRACNTQKCIRAG 132 (936)
Q Consensus 61 ~eiR~~Fl~fF~~~gH~~v~ssslvp~~-Dp--tllFtnAGM~qF-K~~flG~~~p~~~----~~~~~r~~~~QkCiR~g 132 (936)
+.|-+.+-+||.++|-..|..--+.+.. ++ .+.=|+. | ++++|-+. |.-. .+.+.|+-..-+|.|.
T Consensus 138 s~i~~~ir~ff~~~gF~eV~TP~l~~~~~e~~~~~f~~~~----~~~~~~L~~S-pql~~~~~~~g~~rvf~ig~~FR~- 211 (429)
T 1wyd_A 138 SLALKAFRETLYKEGFIEIFTPKIIASATEGGAQLFPVIY----FGKEAFLAQS-PQLYKELMAGVVERVFEVAPAWRA- 211 (429)
T ss_dssp HHHHHHHHHHHHHTTCEECCCCSEESSCSSTTCCCCEEEE----TTEEEEECSC-CHHHHHHHHHHHSEEEEEEEEECC-
T ss_pred HHHHHHHHHHHhhCCCEEEECCEEEeeCCCCCceeEEEec----CCceEEecCC-cHHHHHHHHhCcCceEEEcccccc-
Confidence 3566678899999999988765554421 11 1111211 1 23445211 2100 0013577788999996
Q ss_pred CCCCCCCCCCCCCCccccccccc-ccccccccHHHHHHHHHHHchh
Q 002324 133 GKHNDLDDVGKDTYHHTFFEMLG-NWSFGDYFKNEAIEWAWELLTK 177 (936)
Q Consensus 133 GKhNDld~VG~t~rHhTfFEMLG-nfSFGdYfK~eAI~~awe~Lt~ 177 (936)
+ +. .++||..=|-|+. -.+|.|| +|.+..+.+++..
T Consensus 212 ----E--~~-~~~RH~pEFtqle~e~~~~~~--~dlm~~~e~ll~~ 248 (429)
T 1wyd_A 212 ----E--ES-DTPFHLAEFISMDVEMAFADY--NDVMQLLEKILHN 248 (429)
T ss_dssp ----C--CC-CSSSCCSEEEEEEEEEETCCH--HHHHHHHHHHHHH
T ss_pred ----c--CC-ccccccceeeEeeeeecCCCH--HHHHHHHHHHHHH
Confidence 2 22 2569997777775 4555575 5566666665543
No 60
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=22.14 E-value=3.3e+02 Score=25.47 Aligned_cols=17 Identities=18% Similarity=0.378 Sum_probs=7.2
Q ss_pred HHHHHHHHHHHHHHHHH
Q 002324 853 KIALLQNQVRKAQKKVA 869 (936)
Q Consensus 853 ~l~~l~~~~~~~~k~~~ 869 (936)
++++|+.+++.+..+++
T Consensus 72 ~vqeLqgEI~~Lnq~Lq 88 (121)
T 3mq7_A 72 KVEELEGEITTLNHKLQ 88 (121)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34444444444444333
No 61
>3nem_A Aspartyl-tRNA synthetase; rossmann fold, OB fold, ligase; HET: AMO ATP; 1.89A {Thermococcus kodakarensis} PDB: 3nel_A* 3nen_A 1b8a_A*
Probab=21.95 E-value=32 Score=39.26 Aligned_cols=102 Identities=14% Similarity=0.158 Sum_probs=56.3
Q ss_pred HHHHHHHHhhhcCCCeeecCCCcccCCCCCcceeccccccc----cccccCCCCCC---Ccc-cccccccccccccccCC
Q 002324 62 KVRDTFFKFFEDKNHVNWKSSPVVPVNDPTLLFANAGMNQY----KPIFLGTADPN---TQL-SKLTRACNTQKCIRAGG 133 (936)
Q Consensus 62 eiR~~Fl~fF~~~gH~~v~ssslvp~~DptllFtnAGM~qF----K~~flG~~~p~---~~~-~~~~r~~~~QkCiR~gG 133 (936)
+|-+.+-+||.++|-..|..--|.+. ++.- .|-+.+| ++++|-+.+-- .-+ +.+.|+-..-+|.|..
T Consensus 142 ~i~~~iR~f~~~~gF~EVeTPiL~~~-~~eg---~~~~f~~~~~~~~~yL~~Spql~~q~l~~~g~~rvf~i~~~FR~E- 216 (438)
T 3nem_A 142 SVFKAVRDFFHENGFIEIHTPKIIAT-ATEG---GTELFPMKYFEEDAFLAQSPQLYKQIMMASGLDRVYEIAPIFRAE- 216 (438)
T ss_dssp HHHHHHHHHHHHTTCEECCCCSEESS-CSSC---SSSCCEEEETTEEEEECSCSHHHHHHGGGTTCCEEEEEEEEECCC-
T ss_pred HHHHHHHHHHHHCCcEEEeCCEEecC-CCCC---CccceeEeeCCccEEEecChHHHHHHHHhcCCCceEEEcceEECC-
Confidence 45566778999999988865444442 1110 1111111 23444332100 000 2356888889999973
Q ss_pred CCCCCCCCCCCCCccccccccc-cccccc-cc-----HHHHHHHHHHHc
Q 002324 134 KHNDLDDVGKDTYHHTFFEMLG-NWSFGD-YF-----KNEAIEWAWELL 175 (936)
Q Consensus 134 KhNDld~VG~t~rHhTfFEMLG-nfSFGd-Yf-----K~eAI~~awe~L 175 (936)
+.. |.||..=|-||- -.+|.| |- -++-|.+.+.-+
T Consensus 217 ------~~~-t~RH~pEFt~le~e~a~~~~~~d~m~~~E~li~~~~~~v 258 (438)
T 3nem_A 217 ------EHN-TTRHLNEAWSIDSEMAFIEDEEEVMSFLERLVAHAINYV 258 (438)
T ss_dssp ------SSC-CTTCCSEEEEEEEEEESCSSHHHHHHHHHHHHHHHHHHH
T ss_pred ------CCC-CcccccceeeeeeeeccCccHHHHHHHHHHHHHHHHHHH
Confidence 222 679987788874 457777 62 344555555543
No 62
>1eh2_A EPS15; calcium binding, signaling domain, NPF binding, EF-hand, EH domain; NMR {Homo sapiens} SCOP: a.39.1.6 PDB: 2jxc_A 1f8h_A 1ff1_A
Probab=21.58 E-value=1.1e+02 Score=27.47 Aligned_cols=47 Identities=21% Similarity=0.212 Sum_probs=39.3
Q ss_pred cCCCCChhhhhheeccCCCChhhHHHHHHHcCc----eeChhhHHHHHHHH
Q 002324 453 QGKVLSGQDAFILWDTYGFPLDLTQLMAEERGL----LVDIEGFNNAMDEA 499 (936)
Q Consensus 453 ~~~~l~g~~af~LydTyGfP~dlt~~~a~e~g~----~vd~~~f~~~~~~~ 499 (936)
..+.|+++++-.++-+.|+|-+.+.+|.++... .||.++|..+|..-
T Consensus 27 ~dG~Is~~el~~~l~~~gl~~~el~~i~~~~D~d~dG~id~~EF~~~m~~~ 77 (106)
T 1eh2_A 27 VNGFLSGDKVKPVLLNSKLPVDILGRVWELSDIDHDGMLDRDEFAVAMFLV 77 (106)
T ss_dssp SSSCCBHHHHHHHHHTTTCCHHHHHHHHHHHCSSCSSBCCHHHHHHHHHHH
T ss_pred CCCeEcHHHHHHHHHHcCCCHHHHHHHHHHHcCCCCCcCcHHHHHHHHHHH
Confidence 467999999999999999999888888877543 48899999998654
No 63
>1n9w_A Aspartyl-tRNA synthetase 2; biosynthetic protein; 2.30A {Thermus thermophilus} SCOP: b.40.4.1 d.104.1.1 PDB: 3kfu_A*
Probab=21.31 E-value=34 Score=38.82 Aligned_cols=103 Identities=15% Similarity=0.261 Sum_probs=43.9
Q ss_pred hHHHHHHHHhhhcCCCeeecCCCcccCC-CC--Ccceeccccccc-cccccCCCCCCCc----ccccccccccccccccC
Q 002324 61 TKVRDTFFKFFEDKNHVNWKSSPVVPVN-DP--TLLFANAGMNQY-KPIFLGTADPNTQ----LSKLTRACNTQKCIRAG 132 (936)
Q Consensus 61 ~eiR~~Fl~fF~~~gH~~v~ssslvp~~-Dp--tllFtnAGM~qF-K~~flG~~~p~~~----~~~~~r~~~~QkCiR~g 132 (936)
+.|.+.+-+||.++|-..|..--|.+.. .+ .+.-++. | ++++|-+. |.-. .+.+.|+-..-+|.|.
T Consensus 129 s~i~~~ir~~f~~~gF~EV~TPil~~~~~e~~~~~f~~~~----~g~~~~L~~S-pel~~~~l~~g~~rvf~ig~~FR~- 202 (422)
T 1n9w_A 129 AALVRGFRRYLDRQDFTEIFTPKVVRAGAEGGSGLFGVDY----FEKRAYLAQS-PQLYKQIMVGVFERVYEVAPVWRM- 202 (422)
T ss_dssp HHHHHHHHHHHHHTTCEECCCC---------------------------------CHHHHHHHHHHHSEEEEEEEC----
T ss_pred HHHHHHHHHHHHHCCCEEEECCEEEEeCCCCCceeEEEee----CCCcEEeeeC-HHHHHHHHhhCCCceeEEeCceEC-
Confidence 4566778899999999998754444321 11 1111211 1 22344211 1000 0124578888999996
Q ss_pred CCCCCCCCCCCCCCccccccccc-ccccc-cccHHHHHHHHHHHchhc
Q 002324 133 GKHNDLDDVGKDTYHHTFFEMLG-NWSFG-DYFKNEAIEWAWELLTKV 178 (936)
Q Consensus 133 GKhNDld~VG~t~rHhTfFEMLG-nfSFG-dYfK~eAI~~awe~Lt~~ 178 (936)
+ +. .++||..=|-|++ -.+|. || +|.+..+.+++...
T Consensus 203 ----E--~~-~~~RH~pEFtqle~e~~~~~d~--~dlm~l~e~ll~~l 241 (422)
T 1n9w_A 203 ----E--EH-HTSRHLNEYLSLDVEMGFIADE--EDLMRLEEALLAEM 241 (422)
T ss_dssp -----------------CCEEEEEEEESCSSH--HHHHHHHHHHHHHH
T ss_pred ----C--CC-CCCcccceeEEeeeeeeCCCCH--HHHHHHHHHHHHHH
Confidence 2 22 2569997788875 45555 76 66777776665543
No 64
>3bju_A Lysyl-tRNA synthetase; aminoacyl-tRNA synthetase, ATP- binding, cytoplasm, ligase, nucleotide-binding, phosphoprotein, polymorphism; HET: LYS ATP; 2.31A {Homo sapiens}
Probab=21.01 E-value=34 Score=39.89 Aligned_cols=100 Identities=11% Similarity=0.194 Sum_probs=58.9
Q ss_pred HHHHHHHHhhhcCCCeeecCCCcccCCCCCcceecccccccc--------ccccCCCCCCC----ccccccccccccccc
Q 002324 62 KVRDTFFKFFEDKNHVNWKSSPVVPVNDPTLLFANAGMNQYK--------PIFLGTADPNT----QLSKLTRACNTQKCI 129 (936)
Q Consensus 62 eiR~~Fl~fF~~~gH~~v~ssslvp~~DptllFtnAGM~qFK--------~~flG~~~p~~----~~~~~~r~~~~QkCi 129 (936)
.|-+.+-+||.++|-..|..--|.|.. ..|+--+|. ++||-+.+--+ -.+.+.|+-..-+|.
T Consensus 181 ~i~~~iR~f~~~~gF~EVeTPiL~~~~------gGa~a~~F~t~~~~~~~~~yL~~SpqL~lk~liv~g~~rVyeig~~F 254 (521)
T 3bju_A 181 KIITYIRSFLDELGFLEIETPMMNIIP------GGAVAKPFITYHNELDMNLYMRIAPELYHKMLVVGGIDRVYEIGRQF 254 (521)
T ss_dssp HHHHHHHHHHHHTTCEECCCCSEESSC------CSSSCCCCEEEETTTTEEEEECSCSHHHHHHHHHTTCCEEEEEEEEE
T ss_pred HHHHHHHHHHHHCCCEEEeCceeeccC------CCccccceeeecccCCcceEeeCCHHHHHHHHHhcCcCceEEEEcce
Confidence 344566689999999988765555421 122223332 34444332100 001256788889999
Q ss_pred ccCCCCCCCCCCCCCCCccccccccc-cccccccc-----HHHHHHHHHHHch
Q 002324 130 RAGGKHNDLDDVGKDTYHHTFFEMLG-NWSFGDYF-----KNEAIEWAWELLT 176 (936)
Q Consensus 130 R~gGKhNDld~VG~t~rHhTfFEMLG-nfSFGdYf-----K~eAI~~awe~Lt 176 (936)
|.- +++ +||..=|-||= -.+|.||- -++-|.++|.-+.
T Consensus 255 R~E-------~~~--trH~pEFtmlE~e~af~d~~dlm~l~E~li~~v~~~v~ 298 (521)
T 3bju_A 255 RNE-------GID--LTHNPEFTTCEFYMAYADYHDLMEITEKMVSGMVKHIT 298 (521)
T ss_dssp CCS-------CCB--TTBCSEEEEEEEEEETCCHHHHHHHHHHHHHHHHHHHH
T ss_pred eCC-------CCC--CccchhhhhhhhhhhcCCHHHHHHHHHHHHHHHHHHHh
Confidence 963 333 49999898884 67888873 3455666665544
No 65
>3a5y_A GENX, putative lysyl-tRNA synthetase; aminoacyl-tRNA synthetase paralog, translation, lysyl- synthetase, lysyladenylate analog; HET: KAA; 1.90A {Escherichia coli} PDB: 3a5z_A* 3g1z_A*
Probab=20.99 E-value=1.1e+02 Score=33.67 Aligned_cols=28 Identities=18% Similarity=0.238 Sum_probs=22.5
Q ss_pred CccccCchHHHHHHHHhCCCCCcccccc
Q 002324 288 KHVDTGLGFERLTSILQNKMSNYDTDVF 315 (936)
Q Consensus 288 ~~IDTGmGLERl~~vlqg~~snydtDlF 315 (936)
+|==-|+|+|||+++|-|.+|.=|.=+|
T Consensus 313 PhgG~glGiDRLvmll~g~~~IRdVi~F 340 (345)
T 3a5y_A 313 DCSGVALGVDRLVMLALGAETLAEVIAF 340 (345)
T ss_dssp SEEEEEEEHHHHHHHHHTCSSGGGGSSS
T ss_pred CCcEEEEcHHHHHHHHcCCCcHheEecC
Confidence 4555699999999999999988766444
No 66
>3m4p_A Ehasnrs, asparaginyl-tRNA synthetase, putative; aminoacyl-tRNA synthetase, tRNA ligase, AARS, translation, ATP-binding, nucleotide-binding; HET: 4AD; 2.83A {Entamoeba histolytica} PDB: 3m4q_A
Probab=20.99 E-value=34 Score=39.22 Aligned_cols=89 Identities=16% Similarity=0.326 Sum_probs=49.3
Q ss_pred HHHHHHHHhhhcCCCeeecCCCcccCCCCC---cceeccccccc-cccccCCCCCC---CcccccccccccccccccCCC
Q 002324 62 KVRDTFFKFFEDKNHVNWKSSPVVPVNDPT---LLFANAGMNQY-KPIFLGTADPN---TQLSKLTRACNTQKCIRAGGK 134 (936)
Q Consensus 62 eiR~~Fl~fF~~~gH~~v~ssslvp~~Dpt---llFtnAGM~qF-K~~flG~~~p~---~~~~~~~r~~~~QkCiR~gGK 134 (936)
+|-+.+-+||.++|-..|..=-|.+ .++. -+|. .+-| ++++|-+.+-- .-++.+.|+-..-+|.|..
T Consensus 161 ~i~~~iR~ff~~~gF~EVeTPiL~~-s~~eGg~~~f~---~~~~~~~~~L~~SpqL~lq~l~~g~~rVyeig~~FR~E-- 234 (456)
T 3m4p_A 161 EIQWYFRKYYHDNHFTEIQPPTIVK-TQCEGGSTLFK---LQYFNEPAYLTQSSQLYLESVIASLGKSFCMLSSYRAE-- 234 (456)
T ss_dssp HHHHHHHHHHHHTTCEECCCCSEEC-------CCCCE---EEETTEEEEECSCCHHHHHTTHHHHSSEEEEEEEECCC--
T ss_pred HHHHHHHHHHHhCCCEEEeCCeeec-CCCCCcccccc---ccccCCCcccccCHHHHHHHHHhccCcEEEEEhheecC--
Confidence 4555667899999999886543433 1211 1121 1112 23344433210 0011256788889999963
Q ss_pred CCCCCCCCCCCCccccccccc-ccccccc
Q 002324 135 HNDLDDVGKDTYHHTFFEMLG-NWSFGDY 162 (936)
Q Consensus 135 hNDld~VG~t~rHhTfFEMLG-nfSFGdY 162 (936)
+ -.|.||..=|-||- -.+|.||
T Consensus 235 -----~-~~t~rH~pEFtmlE~e~af~d~ 257 (456)
T 3m4p_A 235 -----Q-SRTVRHLAEYLHLEAELPFISF 257 (456)
T ss_dssp -----S-CCCSSCCSEEEEEEEEEESCCH
T ss_pred -----C-CCCCcchHHHHHhHHHHhcCCH
Confidence 2 23789988888874 4567786
No 67
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=20.96 E-value=1.8e+02 Score=32.55 Aligned_cols=10 Identities=0% Similarity=-0.144 Sum_probs=6.7
Q ss_pred CCccEEEEEc
Q 002324 890 NGKPFCISRV 899 (936)
Q Consensus 890 ~~~~~~v~~~ 899 (936)
++++|++..=
T Consensus 59 gnIrV~vRvR 68 (403)
T 4etp_A 59 GNIRVYLRIR 68 (403)
T ss_dssp CSEEEEEEEC
T ss_pred CCeEEEEEeC
Confidence 6788776543
No 68
>3ry0_A Putative tautomerase; oxalocrotonate tautomerase family, isomerase; 1.40A {Streptomyces achromogenes}
Probab=20.65 E-value=57 Score=26.43 Aligned_cols=30 Identities=7% Similarity=-0.181 Sum_probs=25.2
Q ss_pred cHHHHHHHHHHHchhccCCCCCceEEEEEC
Q 002324 163 FKNEAIEWAWELLTKVYRLPADRLYATYFG 192 (936)
Q Consensus 163 fK~eAI~~awe~Lt~~l~l~~~rL~vTv~~ 192 (936)
-|++-++-.-+.+.+.||+|++.+||.+.+
T Consensus 15 qk~~L~~~it~~~~~~lg~p~~~v~V~i~e 44 (65)
T 3ry0_A 15 EVAALGEALTAAAHETLGTPVEAVRVIVEE 44 (65)
T ss_dssp HHHHHHHHHHHHHHHHHCCCGGGCEEEEEE
T ss_pred HHHHHHHHHHHHHHHHhCcCcccEEEEEEE
Confidence 366667777888889999999999999875
No 69
>3i7f_A Aspartyl-tRNA synthetase; tRNA ligase, APO, ATP-binding, aminoacyl-tRNA synthetase, LI nucleotide-binding, protein biosynthesis; 2.80A {Entamoeba histolytica}
Probab=20.27 E-value=36 Score=39.98 Aligned_cols=88 Identities=16% Similarity=0.260 Sum_probs=49.5
Q ss_pred hHHHHHHHHhhhcCCCeeecCCCcccCCCCCcceecccccccc------ccccCCCCCCC----cccccccccccccccc
Q 002324 61 TKVRDTFFKFFEDKNHVNWKSSPVVPVNDPTLLFANAGMNQYK------PIFLGTADPNT----QLSKLTRACNTQKCIR 130 (936)
Q Consensus 61 ~eiR~~Fl~fF~~~gH~~v~ssslvp~~DptllFtnAGM~qFK------~~flG~~~p~~----~~~~~~r~~~~QkCiR 130 (936)
++|-+.+-+||.++|-..|..--|++. ++ .+|-..|+ ++||-+.+--+ -.+.+.|+-..-+|.|
T Consensus 248 s~i~~~iR~ff~~~gF~EVeTPiL~~~-~~-----egga~~F~v~~~~~~~yL~~Spql~~k~ll~~g~~rVfeI~~~FR 321 (548)
T 3i7f_A 248 SACCGLFREFLTSQKFVEIHTPKLIGC-SS-----EGGSNIFEVKYFDRKAYLAQSPQLYKQMAIMGDFRKVFEVGPVFR 321 (548)
T ss_dssp HHHHHHHHHHHHHTTCEECCCCSBC-------------------------CCBCSCTHHHHHHHHTTTCCEEEEEEEECC
T ss_pred HHHHHHHHHHHHhCCCEEEeCCEEecc-cC-----CCCcceeEEecCCCceEeccCHHHHHHHHHhcCcCcEEEEeeeEe
Confidence 345556679999999998876555552 21 23444553 33443321100 0013567778899999
Q ss_pred cCCCCCCCCCCCCCCCccccccccccc-ccc-cc
Q 002324 131 AGGKHNDLDDVGKDTYHHTFFEMLGNW-SFG-DY 162 (936)
Q Consensus 131 ~gGKhNDld~VG~t~rHhTfFEMLGnf-SFG-dY 162 (936)
+. +. .|.||.+=|-||--. +|+ ||
T Consensus 322 ~E-------~~-~t~RHl~EFtmlE~e~af~~d~ 347 (548)
T 3i7f_A 322 AE-------NS-NTRRHLTEFEGLDIEMEIVENY 347 (548)
T ss_dssp CS-------CC-CSSSCCSCEEEEEEEEECSSCT
T ss_pred cC-------CC-CCCCcchhhhchhhhhhhhcCH
Confidence 73 22 378999989999765 887 56
No 70
>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}
Probab=20.09 E-value=2.5e+02 Score=24.33 Aligned_cols=46 Identities=13% Similarity=0.091 Sum_probs=24.3
Q ss_pred cccchhhHHHHHHHHhhhccCCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002324 820 KIEGSLLEKTVASLKSKVDGAAIPAPKKADIRAKIALLQNQVRKAQKKVAEENLQK 875 (936)
Q Consensus 820 ~~~~~~~~~~v~~l~~~l~~~~ip~~~~~~l~~~l~~l~~~~~~~~k~~~~l~~~~ 875 (936)
++...++..+|..|...+. -...-|+.|.+.+.+.++++.+|..++
T Consensus 6 ~~~~~~le~Ri~~LE~klA----------fqE~tIeeLn~~v~~Qq~~Id~L~~ql 51 (78)
T 3efg_A 6 SPRDQELEARLVELETRLS----------FQEQALTELSEALADARLTGARNAELI 51 (78)
T ss_dssp --CCTHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445566667766666553 333445555555555555555555443
No 71
>1e1o_A Lysyl-tRNA synthetase, heat inducible; ligase, aminoacyl-tRNA synthetase, protein biosynthesis; HET: LYS; 2.12A {Escherichia coli} SCOP: b.40.4.1 d.104.1.1 PDB: 1e1t_A* 1e22_A* 1e24_A* 1lyl_A 1bbu_A* 1bbw_A 1krs_A 1krt_A
Probab=20.07 E-value=37 Score=39.48 Aligned_cols=98 Identities=16% Similarity=0.314 Sum_probs=55.3
Q ss_pred HHHHHHHHhhhcCCCeeecCCCcccCCCCCcceeccccccc--------cccccCCCCCCC----ccccccccccccccc
Q 002324 62 KVRDTFFKFFEDKNHVNWKSSPVVPVNDPTLLFANAGMNQY--------KPIFLGTADPNT----QLSKLTRACNTQKCI 129 (936)
Q Consensus 62 eiR~~Fl~fF~~~gH~~v~ssslvp~~DptllFtnAGM~qF--------K~~flG~~~p~~----~~~~~~r~~~~QkCi 129 (936)
.|-+.+-+||.++|-..|..--|.|. |. .|+--+| ++++|-+.+--+ -.+.+.|+-..-+|.
T Consensus 188 ~i~~~iR~f~~~~gFlEVeTPiL~~~--~~----Ga~ar~F~t~~~~~~~~~yL~~SpqLylk~L~v~G~~rVyeIg~~F 261 (504)
T 1e1o_A 188 KILAAIRQFMVARGFMEVETPMMQVI--PG----GASARPFITHHNALDLDMYLRIAPELYLKRLVVGGFERVFEINRNF 261 (504)
T ss_dssp HHHHHHHHHHHTTTCEECCCCSEESS--CC----SSCCCCCEEEETTTTEEEEECSCSHHHHHHHHHHTCCEEEEEEEEE
T ss_pred HHHHHHHHHHHHCCCEEEECCeEEec--CC----CCcccceEeccCCCCceEEeccCHHHHHHHHhhcCCCcEEEEcccc
Confidence 45566778999999988865444432 11 1111222 224443321000 001256778889999
Q ss_pred ccCCCCCCCCCCCCCCCccccccccc-ccccccccHHHHHHHHHHHch
Q 002324 130 RAGGKHNDLDDVGKDTYHHTFFEMLG-NWSFGDYFKNEAIEWAWELLT 176 (936)
Q Consensus 130 R~gGKhNDld~VG~t~rHhTfFEMLG-nfSFGdYfK~eAI~~awe~Lt 176 (936)
|.- +. ++||..=|-||. -.+|.|| +|.+..+-+++.
T Consensus 262 R~E-------~~--~~rH~pEFt~lE~e~af~d~--~dlm~l~E~li~ 298 (504)
T 1e1o_A 262 RNE-------GI--SVRHNPEFTMMELYMAYADY--HDLIELTESLFR 298 (504)
T ss_dssp CCC-------CC--CC-CCSEEEEEEEEEESCCH--HHHHHHHHHHHH
T ss_pred cCC-------CC--CccccCceeeeeeeecCCCH--HHHHHHHHHHHH
Confidence 962 33 359999999986 5677787 345555555444
No 72
>3a74_A Lysyl-tRNA synthetase; aminoacyl tRNA synthetase, ligase, protein biosynthesis, AMI tRNA synthetase, ATP-binding, magnesium; HET: B4P LYN; 1.80A {Geobacillus stearothermophilus} PDB: 3e9h_A* 3e9i_A*
Probab=20.01 E-value=37 Score=39.34 Aligned_cols=105 Identities=12% Similarity=0.247 Sum_probs=58.8
Q ss_pred hHHHHHHHHhhhcCCCeeecCCCcccCCCC--Ccceeccccccc-cccccCCCCCCC----cccccccccccccccccCC
Q 002324 61 TKVRDTFFKFFEDKNHVNWKSSPVVPVNDP--TLLFANAGMNQY-KPIFLGTADPNT----QLSKLTRACNTQKCIRAGG 133 (936)
Q Consensus 61 ~eiR~~Fl~fF~~~gH~~v~ssslvp~~Dp--tllFtnAGM~qF-K~~flG~~~p~~----~~~~~~r~~~~QkCiR~gG 133 (936)
+.|-+.+-+||.++|-..|..--|.+..-- .=.|+-- .+.| ++++|-+.+--+ -.+.+.|+-..-+|.|.-
T Consensus 178 s~i~~~iR~ff~~~gF~EVeTPiL~~~~~Ga~a~~F~~~-~~~~~~~~yLr~SpqLylk~l~v~G~~rVyeig~~FR~E- 255 (493)
T 3a74_A 178 SLIIQSMRRYLDSHGYLEVETPMMHAVAGGAAARPFITH-HNALDMTLYMRIAIELHLKRLIVGGLEKVYEIGRVFRNE- 255 (493)
T ss_dssp HHHHHHHHHHHHHTTCEECCCCSEESSCCSSSSCCCEEE-ETTTTEEEEECSCSHHHHHHHHHTTCCEEEEEEEEECCC-
T ss_pred HHHHHHHHHHHHhCCeEEEECCeEEecCCCCcccceEec-ccCCCceeEEecCHHHHHHHHhhcccCceEEECccccCC-
Confidence 456667778999999998866544442110 0112100 0111 123443221000 001256778889999963
Q ss_pred CCCCCCCCCCCCCccccccccc-ccccccccHHHHHHHHHHHchh
Q 002324 134 KHNDLDDVGKDTYHHTFFEMLG-NWSFGDYFKNEAIEWAWELLTK 177 (936)
Q Consensus 134 KhNDld~VG~t~rHhTfFEMLG-nfSFGdYfK~eAI~~awe~Lt~ 177 (936)
+. ++||..=|-||. -.+|.|| +|.+..+-+++..
T Consensus 256 ------~~--~~rH~pEFT~lE~e~af~d~--~dlm~l~E~ll~~ 290 (493)
T 3a74_A 256 ------GI--STRHNPEFTMLELYEAYADF--RDIMKLTENLIAH 290 (493)
T ss_dssp ------CC--BTTBCSEEEEEEEEEETCCH--HHHHHHHHHHHHH
T ss_pred ------CC--CcccCCceeEEEEEecCCCH--HHHHHHHHHHHHH
Confidence 33 359999999986 5677786 4566666665554
Done!