Query 002325
Match_columns 936
No_of_seqs 49 out of 51
Neff 3.4
Searched_HMMs 46136
Date Thu Mar 28 21:32:39 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002325.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/002325hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR00606 rad50 rad50. This fa 95.2 15 0.00033 47.8 44.7 73 835-910 898-970 (1311)
2 KOG0161 Myosin class II heavy 94.1 34 0.00073 46.7 43.0 184 368-573 1171-1364(1930)
3 TIGR02169 SMC_prok_A chromosom 93.6 25 0.00055 43.8 37.5 8 160-167 7-14 (1164)
4 PRK04778 septation ring format 92.5 29 0.00063 41.5 31.5 145 737-881 352-528 (569)
5 TIGR00606 rad50 rad50. This fa 90.4 71 0.0015 42.0 43.8 56 863-928 1094-1149(1311)
6 PF12128 DUF3584: Protein of u 89.1 86 0.0019 41.0 37.4 68 840-907 817-884 (1201)
7 PF05483 SCP-1: Synaptonemal c 89.0 70 0.0015 39.8 30.1 143 732-877 586-728 (786)
8 PF00261 Tropomyosin: Tropomyo 86.9 47 0.001 35.5 21.9 69 732-800 91-159 (237)
9 TIGR02169 SMC_prok_A chromosom 85.6 1.1E+02 0.0024 38.4 29.0 13 877-889 472-484 (1164)
10 TIGR02168 SMC_prok_B chromosom 84.9 1.1E+02 0.0025 38.1 37.3 36 455-490 170-205 (1179)
11 COG1196 Smc Chromosome segrega 83.4 1.6E+02 0.0034 38.5 36.0 59 834-892 441-499 (1163)
12 KOG4674 Uncharacterized conser 82.8 2.1E+02 0.0045 39.5 42.5 136 762-897 913-1066(1822)
13 PF05483 SCP-1: Synaptonemal c 82.7 1.4E+02 0.003 37.4 28.4 144 700-851 236-382 (786)
14 PF09789 DUF2353: Uncharacteri 80.0 1.2E+02 0.0026 34.8 19.5 94 771-875 129-232 (319)
15 KOG4643 Uncharacterized coiled 77.5 2.4E+02 0.0052 37.0 35.2 476 74-815 126-630 (1195)
16 KOG0994 Extracellular matrix g 76.7 2.7E+02 0.0059 37.1 33.8 122 429-561 1368-1501(1758)
17 PLN02939 transferase, transfer 76.1 1.8E+02 0.004 37.8 19.6 202 670-927 135-339 (977)
18 TIGR02168 SMC_prok_B chromosom 74.0 2.4E+02 0.0053 35.3 29.5 10 57-66 96-105 (1179)
19 PF06160 EzrA: Septation ring 69.7 2.6E+02 0.0056 33.8 27.1 49 875-926 272-320 (560)
20 PF15619 Lebercilin: Ciliary p 69.5 1.6E+02 0.0034 31.3 20.4 160 731-898 24-188 (194)
21 KOG0250 DNA repair protein RAD 69.3 3.7E+02 0.008 35.4 32.5 167 740-910 309-496 (1074)
22 PF07888 CALCOCO1: Calcium bin 67.9 3E+02 0.0064 33.8 21.9 29 763-791 208-236 (546)
23 PF06160 EzrA: Septation ring 66.9 2.9E+02 0.0063 33.4 37.4 152 735-907 346-508 (560)
24 COG0497 RecN ATPase involved i 65.2 2.3E+02 0.0049 34.8 16.4 130 668-804 159-305 (557)
25 KOG4673 Transcription factor T 61.5 4.4E+02 0.0095 33.5 27.6 92 706-797 503-602 (961)
26 KOG0994 Extracellular matrix g 58.3 6.1E+02 0.013 34.2 27.2 82 658-739 1414-1495(1758)
27 PF04048 Sec8_exocyst: Sec8 ex 58.1 1.7E+02 0.0036 29.2 11.8 98 781-885 42-141 (142)
28 PF05667 DUF812: Protein of un 56.6 3.6E+02 0.0078 33.3 16.3 93 834-926 403-502 (594)
29 KOG0996 Structural maintenance 55.0 6.7E+02 0.015 33.7 30.4 160 768-927 433-609 (1293)
30 PF11945 WASH_WAHD: WAHD domai 52.0 47 0.001 37.3 7.6 56 806-861 17-72 (297)
31 PRK11637 AmiB activator; Provi 51.6 4.4E+02 0.0095 30.5 20.9 60 842-901 194-253 (428)
32 PF04048 Sec8_exocyst: Sec8 ex 50.1 1.2E+02 0.0026 30.2 9.4 71 756-826 60-139 (142)
33 PF10168 Nup88: Nuclear pore c 49.0 4.2E+02 0.0091 33.4 15.5 14 51-64 46-59 (717)
34 KOG0971 Microtubule-associated 47.1 8.1E+02 0.018 32.3 24.0 32 839-870 532-573 (1243)
35 PF04949 Transcrip_act: Transc 46.8 44 0.00095 34.7 5.8 100 366-470 39-146 (159)
36 PF10191 COG7: Golgi complex c 44.9 5E+02 0.011 32.8 15.4 154 733-919 70-228 (766)
37 PF10168 Nup88: Nuclear pore c 44.5 4.8E+02 0.01 32.9 15.1 40 806-845 613-652 (717)
38 COG1196 Smc Chromosome segrega 43.5 9.1E+02 0.02 31.9 27.3 15 907-921 479-493 (1163)
39 COG1579 Zn-ribbon protein, pos 42.9 5.1E+02 0.011 28.8 16.5 50 805-854 122-171 (239)
40 KOG0980 Actin-binding protein 41.8 9.4E+02 0.02 31.5 24.6 68 668-735 363-433 (980)
41 PRK02224 chromosome segregatio 41.1 8.2E+02 0.018 30.6 48.4 10 650-659 461-470 (880)
42 PF13870 DUF4201: Domain of un 40.5 4.2E+02 0.009 27.0 15.5 119 782-904 6-135 (177)
43 KOG3091 Nuclear pore complex, 38.2 2.3E+02 0.005 34.4 10.5 103 398-530 397-502 (508)
44 KOG0250 DNA repair protein RAD 37.4 1.1E+03 0.025 31.3 29.6 120 706-825 310-433 (1074)
45 PF09789 DUF2353: Uncharacteri 37.1 1.5E+02 0.0033 34.0 8.6 70 450-519 72-146 (319)
46 smart00035 CLa CLUSTERIN alpha 35.8 1.2E+02 0.0026 33.1 7.1 59 805-863 96-154 (216)
47 PHA03332 membrane glycoprotein 34.6 3.9E+02 0.0085 35.3 12.2 44 807-850 905-948 (1328)
48 PF06810 Phage_GP20: Phage min 33.2 2.4E+02 0.0051 28.9 8.6 89 452-578 15-103 (155)
49 PRK02224 chromosome segregatio 33.1 1.1E+03 0.023 29.7 40.0 23 376-398 139-161 (880)
50 KOG2760 Vacuolar sorting prote 32.1 23 0.00051 41.3 1.4 49 176-226 195-243 (432)
51 PF08580 KAR9: Yeast cortical 32.0 6.7E+02 0.015 31.6 13.6 219 376-614 123-355 (683)
52 KOG3758 Uncharacterized conser 31.3 7.4E+02 0.016 31.1 13.4 79 845-927 105-195 (655)
53 PRK11637 AmiB activator; Provi 31.3 8.8E+02 0.019 28.1 17.5 35 774-808 95-129 (428)
54 PRK10869 recombination and rep 31.0 1E+03 0.023 28.9 18.6 14 691-704 188-201 (553)
55 PRK03918 chromosome segregatio 28.5 1.2E+03 0.027 29.0 23.0 197 718-926 161-366 (880)
56 KOG0018 Structural maintenance 28.0 1.6E+03 0.035 30.1 28.0 354 415-867 651-1012(1141)
57 PRK04778 septation ring format 27.8 1.2E+03 0.025 28.4 36.0 109 766-880 439-550 (569)
58 PLN03229 acetyl-coenzyme A car 27.6 1.4E+03 0.031 29.4 20.5 91 360-465 384-494 (762)
59 PHA02562 46 endonuclease subun 26.5 1.1E+03 0.024 27.7 23.5 29 837-865 377-405 (562)
60 KOG3691 Exocyst complex subuni 25.2 4.8E+02 0.01 33.9 10.7 152 759-910 80-304 (982)
61 cd08915 V_Alix_like Protein-in 24.4 1E+03 0.022 26.6 17.0 46 702-747 74-119 (342)
62 PF15290 Syntaphilin: Golgi-lo 23.9 2.8E+02 0.0061 31.7 7.7 60 766-826 73-154 (305)
63 PF12128 DUF3584: Protein of u 23.7 1.9E+03 0.04 29.3 27.4 206 708-920 327-555 (1201)
64 KOG4674 Uncharacterized conser 23.6 2.3E+03 0.05 30.4 38.7 55 842-896 443-497 (1822)
65 PF11101 DUF2884: Protein of u 23.1 4.6E+02 0.0099 28.3 9.0 95 196-291 96-218 (229)
66 PF06008 Laminin_I: Laminin Do 22.8 1E+03 0.022 25.9 14.9 75 666-740 123-199 (264)
67 PF09738 DUF2051: Double stran 22.7 8.8E+02 0.019 27.7 11.4 95 669-764 83-178 (302)
68 PF14931 IFT20: Intraflagellar 22.0 8E+02 0.017 24.5 12.1 62 696-757 55-118 (120)
69 PRK10361 DNA recombination pro 21.9 1.5E+03 0.032 27.6 17.4 23 807-832 136-158 (475)
70 PF09726 Macoilin: Transmembra 21.8 7.2E+02 0.016 31.4 11.4 110 663-794 538-655 (697)
71 PF04899 MbeD_MobD: MbeD/MobD 20.8 6.3E+02 0.014 23.3 8.0 38 819-860 26-63 (70)
72 smart00762 Cog4 COG4 transport 20.1 1.9E+02 0.0041 32.6 5.6 38 888-925 79-116 (324)
73 KOG1655 Protein involved in va 20.0 9.2E+02 0.02 26.6 10.2 71 837-911 124-198 (218)
No 1
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=95.21 E-value=15 Score=47.85 Aligned_cols=73 Identities=11% Similarity=0.141 Sum_probs=56.3
Q ss_pred HHhhhhhhhhHHhhHHHHHHHHHHhhhhhHHHHHHHHhhhHHHHhHHHHhhccchHHHHHHHHHHHHHHhhcccch
Q 002325 835 ERCNFRLDSLSSQSKRLILKANVITRTGLSYKQKLERRCSDLQKAEAEVDLLGDEVDTLSGLLEKIYIALDHYSSV 910 (936)
Q Consensus 835 e~n~~Rle~L~~Q~~~Lv~qa~~Lkkk~l~YKq~le~RcsnLqKAEaEVDLLGDeVd~LLsLLeKIYiALDHYSPV 910 (936)
.....++..+..++.|+... +.+....|.+...++....+++..+|+-+...|+.|-.+...|---++.-.|-
T Consensus 898 ~~l~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~y~~~~~~~ 970 (1311)
T TIGR00606 898 QSLIREIKDAKEQDSPLETF---LEKDQQEKEELISSKETSNKKAQDKVNDIKEKVKNIHGYMKDIENKIQDGKDD 970 (1311)
T ss_pred HHHHHHHHHHHHHhhhhhHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHH
Confidence 44556667777888888777 55556678888888888999999999999999999999999995444443443
No 2
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=94.06 E-value=34 Score=46.75 Aligned_cols=184 Identities=18% Similarity=0.221 Sum_probs=106.2
Q ss_pred HHHHHHHHHHHHHHHhhhHHHHHhhHHH---HHHHHHHHhhcCCCCCCccccccHHHhhhHHHHHHhHHHHHhhcCCCCc
Q 002325 368 ELVNHFKAEMTKMKRIHELKVTEMTEDL---FALKREYLKERGSSLPIKKDKEFDILRKKIPEVLSKLDDILVENEKLPA 444 (936)
Q Consensus 368 eli~yfk~em~KMkR~HEs~lqeKTEEl---F~lKrE~lkerGsSl~lrkdkEfe~lRKKIpeVIsKLD~Ii~~n~klp~ 444 (936)
+=+..+-..+..||+.|.-.+.+.++.+ .+.|....++++ .+..-+-++...+++..+....+.-
T Consensus 1171 ee~~~~e~~~~~lr~~~~~~~~el~~qle~l~~~k~~lekek~------------~lq~e~~~l~~ev~~~~~~k~~~e~ 1238 (1930)
T KOG0161|consen 1171 EETLDHEAQIEELRKKHADSLAELQEQLEQLQKDKAKLEKEKS------------DLQREIADLAAELEQLSSEKKDLEK 1238 (1930)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHhhhhccHHH
Confidence 3445567778899999988877776554 455555545543 2444455666666666666655432
Q ss_pred cccccccccCchhhhhHHHhhhhhhhh-------hhhhhHHHhhhhhhhhchhHHHHHhhhhhHHHHHHHHHhhhhhhhh
Q 002325 445 FSENAEGLCNFKDRLESLLLENRQLRS-------LLTDKKNEVKRLSLKVSDTAEIMLQRSLTEENLVKRIGNLQGALDD 517 (936)
Q Consensus 445 f~~~~~~~~~l~dR~~sl~~EN~qLrd-------lladk~kevk~LS~qvSdA~~k~sq~~~~Ee~L~~qI~kL~~d~ED 517 (936)
++.. +..++-.+......+.+ -.+-.+++...|+.|+.++..+.++-+-....+..||+.++..+++
T Consensus 1239 ~~k~------~E~~l~elq~k~~~~~~~~~~l~~q~~~l~~E~~~l~~~lee~e~~~~~~~r~~~~~~~qle~~k~qle~ 1312 (1930)
T KOG0161|consen 1239 KDKK------LEAQLSELQLKLDEQERLRNDLTAKRSRLQNENEELSRQLEEAEAKLSALSRDKQALESQLEELKRQLEE 1312 (1930)
T ss_pred HHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2211 11233333222222222 2455678889999999999999999999999999999999888876
Q ss_pred hhhHHHHHhHHHHhhhhhhhhhhhhccccchhHHHHHHHHHHHHHhhhhhccCchh
Q 002325 518 AHIEASITEGVYKCLLGEAADFIKSVSKKSDLEYELMQEVYEIIFSDAAHNATPLA 573 (936)
Q Consensus 518 ~~IE~~IrE~VYkc~lre~~~~~~~~~e~~~le~~~~~eiy~ii~~eA~~~~~~~~ 573 (936)
-.=+.+=...- ++-+-.+.+..-+..+-+-+-+.+++.-+-.-.+..+....
T Consensus 1313 e~r~k~~l~~~----l~~l~~e~~~l~e~leee~e~~~~l~r~lsk~~~e~~~~~~ 1364 (1930)
T KOG0161|consen 1313 ETREKSALENA----LRQLEHELDLLREQLEEEQEAKNELERKLSKANAELAQWKK 1364 (1930)
T ss_pred HHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 43322211110 11123334444455555555555555554444444333333
No 3
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=93.59 E-value=25 Score=43.79 Aligned_cols=8 Identities=13% Similarity=0.418 Sum_probs=4.3
Q ss_pred hccccccc
Q 002325 160 IDRIKGCS 167 (936)
Q Consensus 160 i~~~~~~~ 167 (936)
|.++++|.
T Consensus 7 l~nf~s~~ 14 (1164)
T TIGR02169 7 LENFKSFG 14 (1164)
T ss_pred EeCeeeEC
Confidence 45555555
No 4
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=92.48 E-value=29 Score=41.46 Aligned_cols=145 Identities=18% Similarity=0.274 Sum_probs=88.4
Q ss_pred hhHHHHhhhhhhhHhHhHhhhhcccccccccccHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhHHH---HHHHHHHHH
Q 002325 737 SLSQELSHLRDETSRQQILISKSSKEFNDLKGNLTDALEQIEQYKLEVHDLKQKLELAMKELRDTNEE---TRKQVQLLV 813 (936)
Q Consensus 737 lv~qel~~Lr~~~~~q~~lise~~~e~~~~~~~l~~aleqi~~~K~el~~L~~~L~~~s~~LkE~~~e---~~kQLesil 813 (936)
....++..+......-..-+.+....|+.+...+.+..+++...+.+..++...+......-.++.++ .++.+..+=
T Consensus 352 ~lekeL~~Le~~~~~~~~~i~~~~~~ysel~e~leel~e~leeie~eq~ei~e~l~~Lrk~E~eAr~kL~~~~~~L~~ik 431 (569)
T PRK04778 352 QLEKQLESLEKQYDEITERIAEQEIAYSELQEELEEILKQLEEIEKEQEKLSEMLQGLRKDELEAREKLERYRNKLHEIK 431 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555444444556777777888888888888888777777777777776666665555554 233332221
Q ss_pred ----H-HHHhHHHHHHHHHHHH---------------------HHhHHHhhhhhhhhHHhhHHHHHHHHHHh---hhhhH
Q 002325 814 ----I-FIQGLSKTVADFECRA---------------------VADIERCNFRLDSLSSQSKRLILKANVIT---RTGLS 864 (936)
Q Consensus 814 ----v-si~~lsk~f~dfE~~v---------------------~~kle~n~~Rle~L~~Q~~~Lv~qa~~Lk---kk~l~ 864 (936)
. .++++...|.+.-..+ ...++....|+..|..|...|+..+..+. ..+-+
T Consensus 432 r~l~k~~lpgip~~y~~~~~~~~~~i~~l~~~L~~g~VNm~ai~~e~~e~~~~~~~L~~q~~dL~~~a~~lE~~Iqy~nR 511 (569)
T PRK04778 432 RYLEKSNLPGLPEDYLEMFFEVSDEIEALAEELEEKPINMEAVNRLLEEATEDVETLEEETEELVENATLTEQLIQYANR 511 (569)
T ss_pred HHHHHcCCCCCcHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 1 1233333333333322 22445577899999999999999887765 23555
Q ss_pred HHHHHHHhhhHHHHhHH
Q 002325 865 YKQKLERRCSDLQKAEA 881 (936)
Q Consensus 865 YKq~le~RcsnLqKAEa 881 (936)
|+..+..=-.++++||.
T Consensus 512 fr~~~~~V~~~f~~Ae~ 528 (569)
T PRK04778 512 YRSDNEEVAEALNEAER 528 (569)
T ss_pred cCCCCHHHHHHHHHHHH
Confidence 66566666666777765
No 5
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=90.44 E-value=71 Score=41.97 Aligned_cols=56 Identities=16% Similarity=0.244 Sum_probs=33.1
Q ss_pred hHHHHHHHHhhhHHHHhHHHHhhccchHHHHHHHHHHHHHHhhcccchhhcCccHHHHHHHHHHHh
Q 002325 863 LSYKQKLERRCSDLQKAEAEVDLLGDEVDTLSGLLEKIYIALDHYSSVLQHYPGIMEILRLVRREL 928 (936)
Q Consensus 863 l~YKq~le~RcsnLqKAEaEVDLLGDeVd~LLsLLeKIYiALDHYSPVLQhYpGI~Eil~likkeL 928 (936)
.-||.+-++...-+-++++ ...-.+=|.|-|.|||. .+.+.|.-=|+=+|-|=++|
T Consensus 1094 ~~yk~a~~ryrka~i~~~~--------~~~~~~d~~~~~~~~~~--~~~~~~~~~~~~~n~~~~~~ 1149 (1311)
T TIGR00606 1094 PQFRDAEEKYREMMIVMRT--------TELVNKDLDIYYKTLDQ--AIMKFHSMKMEEINKIIRDL 1149 (1311)
T ss_pred hHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHH
Confidence 4566666666555555554 22334457888888885 56665555555555554444
No 6
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=89.09 E-value=86 Score=40.98 Aligned_cols=68 Identities=10% Similarity=0.123 Sum_probs=46.4
Q ss_pred hhhhhHHhhHHHHHHHHHHhhhhhHHHHHHHHhhhHHHHhHHHHhhccchHHHHHHHHHHHHHHhhcc
Q 002325 840 RLDSLSSQSKRLILKANVITRTGLSYKQKLERRCSDLQKAEAEVDLLGDEVDTLSGLLEKIYIALDHY 907 (936)
Q Consensus 840 Rle~L~~Q~~~Lv~qa~~Lkkk~l~YKq~le~RcsnLqKAEaEVDLLGDeVd~LLsLLeKIYiALDHY 907 (936)
+--.+..++..+-++...+...--..++.+.+++..+.+.-.-++-.-.+.+..+.-|......+.++
T Consensus 817 ~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~le~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~ 884 (1201)
T PF12128_consen 817 EKPELEEQLRDLEQELQELEQELNQLQKEVKQRRKELEEELKALEEQLEQLEEQLRRLRDLLEKLAEL 884 (1201)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhc
Confidence 44455666666666666666666666667777777777777777777777777777777777777665
No 7
>PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase [].; GO: 0007130 synaptonemal complex assembly, 0000795 synaptonemal complex
Probab=89.00 E-value=70 Score=39.85 Aligned_cols=143 Identities=18% Similarity=0.241 Sum_probs=93.2
Q ss_pred hhhhhhhHHHHhhhhhhhHhHhHhhhhcccccccccccHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHH
Q 002325 732 KDLSKSLSQELSHLRDETSRQQILISKSSKEFNDLKGNLTDALEQIEQYKLEVHDLKQKLELAMKELRDTNEETRKQVQL 811 (936)
Q Consensus 732 ~~~~elv~qel~~Lr~~~~~q~~lise~~~e~~~~~~~l~~aleqi~~~K~el~~L~~~L~~~s~~LkE~~~e~~kQLes 811 (936)
..++..+.-.++.||-++..-...|-+--.+-..++-.+..-..+...|...|++|...+..+-.-..|+.+.+.+-+++
T Consensus 586 ~kq~k~lenk~~~LrKqvEnk~K~ieeLqqeNk~LKKk~~aE~kq~~~~eikVn~L~~E~e~~kk~~eE~~~~~~keie~ 665 (786)
T PF05483_consen 586 EKQMKILENKCNNLRKQVENKNKNIEELQQENKALKKKITAESKQSNVYEIKVNKLQEELENLKKKHEEETDKYQKEIES 665 (786)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 33455555556666665544444444434444455556666677888888999999988887766666776667777776
Q ss_pred HHHHHHhHHHHHHHHHHHHHHhHHHhhhhhhhhHHhhHHHHHHHHHHhhhhhHHHHHHHHhhhHHH
Q 002325 812 LVIFIQGLSKTVADFECRAVADIERCNFRLDSLSSQSKRLILKANVITRTGLSYKQKLERRCSDLQ 877 (936)
Q Consensus 812 ilvsi~~lsk~f~dfE~~v~~kle~n~~Rle~L~~Q~~~Lv~qa~~Lkkk~l~YKq~le~RcsnLq 877 (936)
=-++=.+|...+.....++.+-++ ..+=.+++||- -++.-|+..-+--.-|-+|++-|-+.|-
T Consensus 666 K~~~e~~L~~EveK~k~~a~EAvK--~q~EtdlrCQh-KIAeMVALMEKHK~qYDkiVEEkDaEL~ 728 (786)
T PF05483_consen 666 KSISEEELLGEVEKAKLTADEAVK--LQEETDLRCQH-KIAEMVALMEKHKHQYDKIVEEKDAELG 728 (786)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHH--hHHHHHHHHHH-HHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 555667777777776666665333 12233455553 2446667778888899999999988874
No 8
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=86.94 E-value=47 Score=35.46 Aligned_cols=69 Identities=16% Similarity=0.268 Sum_probs=28.8
Q ss_pred hhhhhhhHHHHhhhhhhhHhHhHhhhhcccccccccccHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhh
Q 002325 732 KDLSKSLSQELSHLRDETSRQQILISKSSKEFNDLKGNLTDALEQIEQYKLEVHDLKQKLELAMKELRD 800 (936)
Q Consensus 732 ~~~~elv~qel~~Lr~~~~~q~~lise~~~e~~~~~~~l~~aleqi~~~K~el~~L~~~L~~~s~~LkE 800 (936)
-+.++.+-.++...+.....-+.-..+-.+-+.++-+.++.+-+........+..|...|..+.+.|+.
T Consensus 91 eeri~~lE~~l~ea~~~~ee~e~k~~E~~rkl~~~E~~Le~aEeR~e~~E~ki~eLE~el~~~~~~lk~ 159 (237)
T PF00261_consen 91 EERIEELEQQLKEAKRRAEEAERKYEEVERKLKVLEQELERAEERAEAAESKIKELEEELKSVGNNLKS 159 (237)
T ss_dssp HHHHHHCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHH
Confidence 334444444444444333333332333333334444444444444444444444444444444444443
No 9
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=85.57 E-value=1.1e+02 Score=38.44 Aligned_cols=13 Identities=23% Similarity=0.230 Sum_probs=4.8
Q ss_pred HHhHHHHhhccch
Q 002325 877 QKAEAEVDLLGDE 889 (936)
Q Consensus 877 qKAEaEVDLLGDe 889 (936)
.+..++..-+.++
T Consensus 472 ~~~~~~l~~l~~~ 484 (1164)
T TIGR02169 472 YDLKEEYDRVEKE 484 (1164)
T ss_pred HHHHHHHHHHHHH
Confidence 3333333333333
No 10
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=84.91 E-value=1.1e+02 Score=38.07 Aligned_cols=36 Identities=14% Similarity=0.180 Sum_probs=19.2
Q ss_pred chhhhhHHHhhhhhhhhhhhhhHHHhhhhhhhhchh
Q 002325 455 FKDRLESLLLENRQLRSLLTDKKNEVKRLSLKVSDT 490 (936)
Q Consensus 455 l~dR~~sl~~EN~qLrdlladk~kevk~LS~qvSdA 490 (936)
+..++......-..+.|.+......++.|..|+..|
T Consensus 170 ~~~~~~~t~~nL~r~~d~l~el~~ql~~L~~q~~~a 205 (1179)
T TIGR02168 170 YKERRKETERKLERTRENLDRLEDILNELERQLKSL 205 (1179)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444445555566666655555555555544
No 11
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=83.44 E-value=1.6e+02 Score=38.50 Aligned_cols=59 Identities=25% Similarity=0.287 Sum_probs=43.8
Q ss_pred HHHhhhhhhhhHHhhHHHHHHHHHHhhhhhHHHHHHHHhhhHHHHhHHHHhhccchHHH
Q 002325 834 IERCNFRLDSLSSQSKRLILKANVITRTGLSYKQKLERRCSDLQKAEAEVDLLGDEVDT 892 (936)
Q Consensus 834 le~n~~Rle~L~~Q~~~Lv~qa~~Lkkk~l~YKq~le~RcsnLqKAEaEVDLLGDeVd~ 892 (936)
++.....+..+..++..+.....-+.+.=.+++..+......++.+++..|-|.....+
T Consensus 441 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~ 499 (1163)
T COG1196 441 LEELNEELEELEEQLEELRDRLKELERELAELQEELQRLEKELSSLEARLDRLEAEQRA 499 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 44566667777778888777777777777777888888888888888877776665554
No 12
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=82.85 E-value=2.1e+02 Score=39.50 Aligned_cols=136 Identities=29% Similarity=0.306 Sum_probs=90.3
Q ss_pred ccccccccHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHh-------H
Q 002325 762 EFNDLKGNLTDALEQIEQYKLEVHDLKQKLELAMKELRDTNEETRKQVQLLVIFIQGLSKTVADFECRAVAD-------I 834 (936)
Q Consensus 762 e~~~~~~~l~~aleqi~~~K~el~~L~~~L~~~s~~LkE~~~e~~kQLesilvsi~~lsk~f~dfE~~v~~k-------l 834 (936)
.......++..|+.++..|+.....+-+.|..+-..+-++..+....++..-..+..+-.-.++++..+... .
T Consensus 913 q~~~l~~~L~~a~s~i~~yqe~~~s~eqsl~~~ks~lde~~~~~ea~ie~~~~k~tslE~~ls~L~~~~~~l~~e~~~~~ 992 (1822)
T KOG4674|consen 913 EITDLKEELTDALSQIREYQEEYSSLEQSLESVKSELDETRLELEAKIESLHKKITSLEEELSELEKEIENLREELELST 992 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 344578899999999999999998888888888888888777766666666555555555555555555432 3
Q ss_pred HHhhhhhhhhHHhhHHHHHHHHHHhhhhhHHHHHHHHhhhHHH-------Hh----HHHHhhccchHHHHHHHH
Q 002325 835 ERCNFRLDSLSSQSKRLILKANVITRTGLSYKQKLERRCSDLQ-------KA----EAEVDLLGDEVDTLSGLL 897 (936)
Q Consensus 835 e~n~~Rle~L~~Q~~~Lv~qa~~Lkkk~l~YKq~le~RcsnLq-------KA----EaEVDLLGDeVd~LLsLL 897 (936)
+..+.++.+++.+.+++-...-.+.....-|-..+.+-..+|. +| |-++-.+||-+.+|..|=
T Consensus 993 k~~e~~~~~~~~e~~sl~ne~~~~~~~~s~~~~~~~~~k~dl~~~~~~~~~a~~~Ye~el~~ha~~~q~l~kl~ 1066 (1822)
T KOG4674|consen 993 KGKEDKLLDLSREISSLQNELKSLLKAASQANEQIEDLQNDLKTETEQLRKAQSKYESELVQHADLTQKLIKLR 1066 (1822)
T ss_pred cchhhhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456667777777777776666666666555555544444443 33 445666777666655543
No 13
>PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase [].; GO: 0007130 synaptonemal complex assembly, 0000795 synaptonemal complex
Probab=82.71 E-value=1.4e+02 Score=37.42 Aligned_cols=144 Identities=24% Similarity=0.255 Sum_probs=90.2
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHhhhhhhhHhHhHhhhhcccccccccccHHHHHHHHHH
Q 002325 700 KEKLKQETRLLSSLVEEKENLVSEAVATLLEEKDLSKSLSQELSHLRDETSRQQILISKSSKEFNDLKGNLTDALEQIEQ 779 (936)
Q Consensus 700 ~eKlk~~i~~l~sLv~EKE~lv~~a~~~l~~~~~~~elv~qel~~Lr~~~~~q~~lise~~~e~~~~~~~l~~aleqi~~ 779 (936)
..|.++ +..|-.-..+|++-+......|.+ -+..++.|-+.+-.|+.++.++..+-+.+...|+.+=.-...
T Consensus 236 n~kEkq-vs~L~~q~~eKen~~kdl~~~l~e-------s~~~~~qLeE~~~~q~E~Lkes~~~qe~L~~eL~~~K~slq~ 307 (786)
T PF05483_consen 236 NDKEKQ-VSLLQTQLKEKENKIKDLLLLLQE-------SQDKCNQLEEKTKEQHENLKESNEEQEHLLQELEDIKQSLQE 307 (786)
T ss_pred hhHHHH-HHHHHHHHHhhHhHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHH
Confidence 444444 334444557999999999985443 444567788888889998888888888888888766665666
Q ss_pred hHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH---hHHHhhhhhhhhHHhhHHH
Q 002325 780 YKLEVHDLKQKLELAMKELRDTNEETRKQVQLLVIFIQGLSKTVADFECRAVA---DIERCNFRLDSLSSQSKRL 851 (936)
Q Consensus 780 ~K~el~~L~~~L~~~s~~LkE~~~e~~kQLesilvsi~~lsk~f~dfE~~v~~---kle~n~~Rle~L~~Q~~~L 851 (936)
+...-..|...|.+++..+-.+..+...||+-.=..-..-+-.+++|++++|. -+..-..|++.+.+|++.+
T Consensus 308 ~~~tq~~le~~lq~~~k~~~qlt~eKe~~~Ee~nk~k~~~s~~v~e~qtti~~L~~lL~~Eqqr~~~~ed~lk~l 382 (786)
T PF05483_consen 308 SESTQKALEEDLQQATKTLIQLTEEKEAQMEELNKAKAQHSFVVTELQTTICNLKELLTTEQQRLKKNEDQLKIL 382 (786)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 65566777777888877776666665555443322223334445555555554 2223334555555555444
No 14
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=79.99 E-value=1.2e+02 Score=34.77 Aligned_cols=94 Identities=21% Similarity=0.346 Sum_probs=60.4
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhHHH----------HHHHHHHHHHHHHhHHHHHHHHHHHHHHhHHHhhhh
Q 002325 771 TDALEQIEQYKLEVHDLKQKLELAMKELRDTNEE----------TRKQVQLLVIFIQGLSKTVADFECRAVADIERCNFR 840 (936)
Q Consensus 771 ~~aleqi~~~K~el~~L~~~L~~~s~~LkE~~~e----------~~kQLesilvsi~~lsk~f~dfE~~v~~kle~n~~R 840 (936)
+..+.|+...+.....|...+....+++.|+..+ +-.+|..++. +=..-+.||++.+.+ .|
T Consensus 129 e~lV~qLEk~~~q~~qLe~d~qs~lDEkeEl~~ERD~yk~K~~RLN~ELn~~L~---g~~~rivDIDaLi~E------NR 199 (319)
T PF09789_consen 129 EDLVEQLEKLREQIEQLERDLQSLLDEKEELVTERDAYKCKAHRLNHELNYILN---GDENRIVDIDALIME------NR 199 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC---CCCCCcccHHHHHHH------HH
Confidence 3444555555555666666666666666666655 1122322222 212244588887754 23
Q ss_pred hhhhHHhhHHHHHHHHHHhhhhhHHHHHHHHhhhH
Q 002325 841 LDSLSSQSKRLILKANVITRTGLSYKQKLERRCSD 875 (936)
Q Consensus 841 le~L~~Q~~~Lv~qa~~Lkkk~l~YKq~le~Rcsn 875 (936)
.|..++..+-...+.++..-.-||.|+++|+++
T Consensus 200 --yL~erl~q~qeE~~l~k~~i~KYK~~le~k~~~ 232 (319)
T PF09789_consen 200 --YLKERLKQLQEEKELLKQTINKYKSALERKRKK 232 (319)
T ss_pred --HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 588899999999999999999999999987665
No 15
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=77.55 E-value=2.4e+02 Score=36.95 Aligned_cols=476 Identities=22% Similarity=0.216 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHhhccccccccchhhhhhcccCCcccccccccccccccccccccchHHHHHHH
Q 002325 74 VNAIEQEAAEKIAEKELELVRLRESLHLYHVGAEESEPFQSLVMKHESGSVKHGSYSSLSDYDKIGESVGGLKNVAKEQL 153 (936)
Q Consensus 74 v~aveqeaaekia~K~~ei~~l~e~l~~~~~g~~~~~~~~s~~~~~e~~~~~~~~~~~~~e~d~~~e~l~~lk~~~~~ql 153 (936)
|..--|+|.|+||++.+|.++|...++.-.-|
T Consensus 126 ~id~~qe~se~i~e~~le~vGl~~~~~~s~s~------------------------------------------------ 157 (1195)
T KOG4643|consen 126 VIDDLQEASEKIAEKLLELVGLEKKYRESRSG------------------------------------------------ 157 (1195)
T ss_pred HHHHHHHHHHHHHHHHHHHhcccceeeccccC------------------------------------------------
Q ss_pred HhhhhhhccccccccccccCCCCcccccccccccccccchhhhhHHhhHHHHHHHHHHHhhhhhhhhccccchhhhhHhH
Q 002325 154 KNLRKEIDRIKGCSSLRRIGSGSEMVGLGGILQDKVSDIRWMDVDKALDSLRTTLDTIFNCADNTVYLSKASLCQWQQEK 233 (936)
Q Consensus 154 ~~L~~~i~~~~~~~~~~~~~sgs~~~gl~gil~~~~~~~~~~~vd~~~d~Lk~~ld~vf~~~~~m~~L~~~s~~~~Q~E~ 233 (936)
|+ ... ++.+..-+.
T Consensus 158 ---------------------~~------------~~~---------------------------------sp~~~~~~~ 171 (1195)
T KOG4643|consen 158 ---------------------KE------------LYK---------------------------------SPYDIVVKK 171 (1195)
T ss_pred ---------------------CC------------CCC---------------------------------Ccchhhcch
Q ss_pred HHHhhHHHHHHHHHHhhhHHHHHHHHhhhhhhhccchhhhhHhHHHHHHHHHHHHHHHHhhcccCCcCCcCCCCCcCCCc
Q 002325 234 EFQGEIEDMVIMNCFRSLKEEFEERLCDQSAQFYDNESLNWLGKIKEISSLREELNAISKSLSVSEIGHLTSHGSIEMGE 313 (936)
Q Consensus 234 e~q~Ei~~ivI~~~ir~LqeEfE~kL~~Q~~~~~~~~s~nw~e~v~eissLR~eL~aI~ksL~~se~g~~iShgs~E~~~ 313 (936)
..-.+++=.+...=||.|+.|+|.|- ++.-++-+.+- ..=.||..||||-.....-
T Consensus 172 ~~hL~velAdle~kir~LrqElEEK~-enll~lr~eLd----dleae~~klrqe~~e~l~e------------------- 227 (1195)
T KOG4643|consen 172 NLHLEVELADLEKKIRTLRQELEEKF-ENLLRLRNELD----DLEAEISKLRQEIEEFLDE------------------- 227 (1195)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHH----HHHHHHHHHHHHHHHHHHH-------------------
Q ss_pred ccccccccccccccccCCCCCCCCCCCCCCCCCccceeecccccch---hcCCCCHH--HHHHHHHHHHHHHHHhhhHHH
Q 002325 314 EWDTNKWTDHLHRKTSSNHVGVSTSPSEGNGKHDESIIVMSENLDS---NLKHMSKE--ELVNHFKAEMTKMKRIHELKV 388 (936)
Q Consensus 314 ~~~~~k~~~~f~~K~s~d~~~~~~~~~e~n~~~~esi~~~pen~ds---~LkhM~ke--eli~yfk~em~KMkR~HEs~l 388 (936)
-.+++++..+..--+-.... .+..-.--+..+++.-. .|+-=++. +-..-++..+-+++.+-|-
T Consensus 228 ----a~ra~~yrdeldalre~aer-----~d~~ykerlmDs~fykdRveelkedN~vLleekeMLeeQLq~lrarse~-- 296 (1195)
T KOG4643|consen 228 ----AHRADRYRDELDALREQAER-----PDTTYKERLMDSDFYKDRVEELKEDNRVLLEEKEMLEEQLQKLRARSEG-- 296 (1195)
T ss_pred ----HHhhhhhhhHHHHHHHhhhc-----CCCccchhhhhhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhcccc--
Q ss_pred HHhhHHHHHHHHHHHhhcCCCCCCccccccHHHhhhHHHHHHh----------------HHHHHhhcCCCCccccccccc
Q 002325 389 TEMTEDLFALKREYLKERGSSLPIKKDKEFDILRKKIPEVLSK----------------LDDILVENEKLPAFSENAEGL 452 (936)
Q Consensus 389 qeKTEElF~lKrE~lkerGsSl~lrkdkEfe~lRKKIpeVIsK----------------LD~Ii~~n~klp~f~~~~~~~ 452 (936)
..-.-|+..+|..+--=+ + +.+..|+|+.+...- |++|-++|+.+|.-+...+..
T Consensus 297 ~tleseiiqlkqkl~dm~--~-------erdtdr~kteeL~eEnstLq~q~eqL~~~~ellq~~se~~E~en~Sl~~e~e 367 (1195)
T KOG4643|consen 297 ATLESEIIQLKQKLDDMR--S-------ERDTDRHKTEELHEENSTLQVQKEQLDGQMELLQIFSENEELENESLQVENE 367 (1195)
T ss_pred CChHHHHHHHHHHHHHHH--H-------hhhhHHHHHHHHHHHHHHHHHHHHHhhhhhhHhhhhhcchhhhhhhHHHHHH
Q ss_pred cCchhhhhHHHhhhhhhhhhhhhhHHHhhhhhhhhchhHHHHHhhhhhHHHHHHHHHhhhhhhhhhhhHHHHHhHHHHhh
Q 002325 453 CNFKDRLESLLLENRQLRSLLTDKKNEVKRLSLKVSDTAEIMLQRSLTEENLVKRIGNLQGALDDAHIEASITEGVYKCL 532 (936)
Q Consensus 453 ~~l~dR~~sl~~EN~qLrdlladk~kevk~LS~qvSdA~~k~sq~~~~Ee~L~~qI~kL~~d~ED~~IE~~IrE~VYkc~ 532 (936)
.-=.+|..-++.|||.+=++|... . |+-+-.-..|++--...-.+|.+.++-|+..+-++.-...=-|++.|-+
T Consensus 368 qLts~ralkllLEnrrlt~tleel-----q-sss~Ee~~SK~leleke~KnLs~k~e~Leeri~ql~qq~~eled~~K~L 441 (1195)
T KOG4643|consen 368 QLTSDRALKLLLENRRLTGTLEEL-----Q-SSSYEELISKHLELEKEHKNLSKKHEILEERINQLLQQLAELEDLEKKL 441 (1195)
T ss_pred HhhhHHHHHHHHHhHHHHHHHHHH-----h-hhhHHHHHHHHHHHHHHhHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred hhhhhhhhhhccccchhHHHHHHHHHHHHHhhhhhccCchhhhhHHHh---hccccccccchhhhhh--hhhhhHHHHHH
Q 002325 533 LGEAADFIKSVSKKSDLEYELMQEVYEIIFSDAAHNATPLAEENLVKR---IGNLQGALDDANIEAS--ISEGVYKCLLR 607 (936)
Q Consensus 533 lre~~~~~~~~~e~~~le~~~~~eiy~ii~~eA~~~~~~~~~~~l~k~---~g~~~~aleds~ie~~--I~e~v~~iil~ 607 (936)
..| .+++..+..|...+.-.. .| +++...++ =..+.+..+..
T Consensus 442 ~~E---------------------------~ekl~~e~~t~~~s~~rq~~e~e------~~~q~ls~~~Q~~~et~el~~ 488 (1195)
T KOG4643|consen 442 QFE---------------------------LEKLLEETSTVTRSLSRQSLENE------ELDQLLSLQDQLEAETEELLN 488 (1195)
T ss_pred HHH---------------------------HHHHHHHHHHHHHhHHHHHHHhH------HHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHhhhhhhhhhchhHHHHHHHHHHHhhhhccccCCCCCCccccccchhHHHhHhHHHHHHHHHHHHHHHHHHHhhHhhh
Q 002325 608 EAVDSIKSVSEKSDLEYELMQEVYGIIFSDAAHNATPGSTCAFEDCDMESVIMQDLYEVIFREALKEAEVKLNELNQKYF 687 (936)
Q Consensus 608 E~v~e~k~~~e~~~le~~~~~~~y~~i~~~~a~~~~~~s~~~~e~~~mEs~i~ed~c~Vi~ke~vkEae~~L~~~~~k~~ 687 (936)
. ++..++-+....++.+-+...+. +
T Consensus 489 ~-iknlnk~L~~r~~elsrl~a~~~------------------------------------------------------e 513 (1195)
T KOG4643|consen 489 Q-IKNLNKSLNNRDLELSRLHALKN------------------------------------------------------E 513 (1195)
T ss_pred H-HHHHHHHHHHHHHHHHHHHHHHH------------------------------------------------------H
Q ss_pred hHHHHHHHhHHH---HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHhhhhhhhHhHhHhhhhcccccc
Q 002325 688 METELRRLEVAE---KEKLKQETRLLSSLVEEKENLVSEAVATLLEEKDLSKSLSQELSHLRDETSRQQILISKSSKEFN 764 (936)
Q Consensus 688 lEee~l~l~~~e---~eKlk~~i~~l~sLv~EKE~lv~~a~~~l~~~~~~~elv~qel~~Lr~~~~~q~~lise~~~e~~ 764 (936)
+++.+...-.+- .+|+...=..+..|-+|...|+..++. |++.+....++-|..+.+--+-.+|+.
T Consensus 514 lkeQ~kt~~~qye~~~~k~eeLe~~l~~lE~ENa~LlkqI~~-Lk~t~qn~~~LEq~~n~lE~~~~elkk---------- 582 (1195)
T KOG4643|consen 514 LKEQYKTCDIQYELLSNKLEELEELLGNLEEENAHLLKQIQS-LKTTSQNGALLEQNNNDLELIHNELKK---------- 582 (1195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH-HHHHhHHHHHHHHhhhHHHHHHHHHHH----------
Q ss_pred cccccHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Q 002325 765 DLKGNLTDALEQIEQYKLEVHDLKQKLELAMKELRDTNEETRKQVQLLVIF 815 (936)
Q Consensus 765 ~~~~~l~~aleqi~~~K~el~~L~~~L~~~s~~LkE~~~e~~kQLesilvs 815 (936)
....+. |+.-.... .+....++.+.--+-.+|...+-++--+.-.|+.
T Consensus 583 -~idaL~-alrrhke~-LE~e~mnQql~~d~~~~kr~ie~Lr~~~~kll~~ 630 (1195)
T KOG4643|consen 583 -YIDALN-ALRRHKEK-LEEEIMNQQLFEDPIPLKRDIEWLRRKESKLLKE 630 (1195)
T ss_pred -HHHHHH-HHHHHHHH-HHHHHhhhhhhhcCCchhhhHHHHHHHHHhhcch
No 16
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=76.69 E-value=2.7e+02 Score=37.14 Aligned_cols=122 Identities=15% Similarity=0.164 Sum_probs=69.5
Q ss_pred HHhHHHHHhhcCCCCcccc------ccccccCchhhhhHHHhh------hhhhhhhhhhhHHHhhhhhhhhchhHHHHHh
Q 002325 429 LSKLDDILVENEKLPAFSE------NAEGLCNFKDRLESLLLE------NRQLRSLLTDKKNEVKRLSLKVSDTAEIMLQ 496 (936)
Q Consensus 429 IsKLD~Ii~~n~klp~f~~------~~~~~~~l~dR~~sl~~E------N~qLrdlladk~kevk~LS~qvSdA~~k~sq 496 (936)
+.+|++..=.+.-.|.... ..+.+|++.+=...+-.. -.+..--|..+.+++..+++-|++|....|+
T Consensus 1368 L~~lne~vCG~p~apC~s~CGG~gC~~~~~cGg~sC~Ga~t~A~~A~~~A~~~~~~l~~~~ae~eq~~~~v~ea~~~ase 1447 (1758)
T KOG0994|consen 1368 LTPLNEQVCGAPGAPCDSLCGGAGCRQDGTCGGLSCRGAVTRAGGALLMAGDADTQLRSKLAEAEQTLSMVREAKLSASE 1447 (1758)
T ss_pred CchhhHHhcCCCCCCCCCCCCCCCCCCCCCccCccccchhcccchHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 4567777777776663111 124455555433333322 3333345566777777888888888777776
Q ss_pred hhhhHHHHHHHHHhhhhhhhhhhhHHHHHhHHHHhhhhhhhhhhhhccccchhHHHHHHHHHHHH
Q 002325 497 RSLTEENLVKRIGNLQGALDDAHIEASITEGVYKCLLGEAADFIKSVSKKSDLEYELMQEVYEII 561 (936)
Q Consensus 497 ~~~~Ee~L~~qI~kL~~d~ED~~IE~~IrE~VYkc~lre~~~~~~~~~e~~~le~~~~~eiy~ii 561 (936)
-...=+..+.|...-++.. +.+++| ++.++.+++.++...+.--...+++-+-+
T Consensus 1448 A~~~Aq~~~~~a~as~~q~-----~~s~~e------l~~Li~~v~~Flt~~~adp~si~~vA~~v 1501 (1758)
T KOG0994|consen 1448 AQQSAQRALEQANASRSQM-----EESNRE------LRNLIQQVRDFLTQPDADPDSIEEVAEEV 1501 (1758)
T ss_pred HHHHHHHHHHHHHHHHHHH-----HHHHHH------HHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Confidence 5544444555555544443 455555 56666777777666655555555544443
No 17
>PLN02939 transferase, transferring glycosyl groups
Probab=76.12 E-value=1.8e+02 Score=37.78 Aligned_cols=202 Identities=19% Similarity=0.221 Sum_probs=102.7
Q ss_pred HHHHHHHHHHHHhhHh--hhhHHHHHHHhHHHHHHHHHHHHHHhhHHHHHH-HHHHHHHHHHHhhhhhhhhhHHHHhhhh
Q 002325 670 EALKEAEVKLNELNQK--YFMETELRRLEVAEKEKLKQETRLLSSLVEEKE-NLVSEAVATLLEEKDLSKSLSQELSHLR 746 (936)
Q Consensus 670 e~vkEae~~L~~~~~k--~~lEee~l~l~~~e~eKlk~~i~~l~sLv~EKE-~lv~~a~~~l~~~~~~~elv~qel~~Lr 746 (936)
.|+++++..+--++.. ..++. .- --..+++.|.+++..|+.=+.|-+ ++-.. .+.+...++...++..||
T Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~ 207 (977)
T PLN02939 135 GMIQNAEKNILLLNQARLQALED-LE-KILTEKEALQGKINILEMRLSETDARIKLA-----AQEKIHVEILEEQLEKLR 207 (977)
T ss_pred HHHHHHHhhhHhHHHHHHHHHHH-HH-HHHHHHHHHHhhHHHHHHHhhhhhhhhhhh-----hhccccchhhHHHHHHHh
Confidence 6888888888434333 12221 10 112346667777777765554321 11112 234567888888899998
Q ss_pred hhhHhHhHhhhhcccccccccccHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhHHHHHHHH
Q 002325 747 DETSRQQILISKSSKEFNDLKGNLTDALEQIEQYKLEVHDLKQKLELAMKELRDTNEETRKQVQLLVIFIQGLSKTVADF 826 (936)
Q Consensus 747 ~~~~~q~~lise~~~e~~~~~~~l~~aleqi~~~K~el~~L~~~L~~~s~~LkE~~~e~~kQLesilvsi~~lsk~f~df 826 (936)
.... |.. .++- +++..-.++....|+|-.-|+..++.....|-++.+- =.++..|.|.-.-+
T Consensus 208 ~~~~-~~~-~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~ 269 (977)
T PLN02939 208 NELL-IRG-ATEG--------LCVHSLSKELDVLKEENMLLKDDIQFLKAELIEVAET--------EERVFKLEKERSLL 269 (977)
T ss_pred hhhh-ccc-cccc--------cccccHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhh--------hHHHHHHHHHHHHH
Confidence 7442 222 0110 1222223344444555444444444333322221111 01122222222222
Q ss_pred HHHHHHhHHHhhhhhhhhHHhhHHHHHHHHHHhhhhhHHHHHHHHhhhHHHHhHHHHhhccchHHHHHHHHHHHHHHhhc
Q 002325 827 ECRAVADIERCNFRLDSLSSQSKRLILKANVITRTGLSYKQKLERRCSDLQKAEAEVDLLGDEVDTLSGLLEKIYIALDH 906 (936)
Q Consensus 827 E~~v~~kle~n~~Rle~L~~Q~~~Lv~qa~~Lkkk~l~YKq~le~RcsnLqKAEaEVDLLGDeVd~LLsLLeKIYiALDH 906 (936)
+..+ ...+.|+ ++-|..+.+-..+ ++|.+=++|++|-.||.+.--.-+|
T Consensus 270 ~~~~----~~~~~~~---------~~~~~~~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (977)
T PLN02939 270 DASL----RELESKF---------IVAQEDVSKLSPL------------------QYDCWWEKVENLQDLLDRATNQVEK 318 (977)
T ss_pred HHHH----HHHHHHH---------Hhhhhhhhhccch------------------hHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2211 1122222 3334443333222 3455788999999999999999999
Q ss_pred ccchhhcCccHHHHHHHHHHH
Q 002325 907 YSSVLQHYPGIMEILRLVRRE 927 (936)
Q Consensus 907 YSPVLQhYpGI~Eil~likke 927 (936)
|..||+|+-.+.+=...+..-
T Consensus 319 ~~~~~~~~~~~~~~~~~~~~~ 339 (977)
T PLN02939 319 AALVLDQNQDLRDKVDKLEAS 339 (977)
T ss_pred HHHHhccchHHHHHHHHHHHH
Confidence 999999998887766655443
No 18
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=74.02 E-value=2.4e+02 Score=35.31 Aligned_cols=10 Identities=20% Similarity=0.454 Sum_probs=6.8
Q ss_pred cceEEeeecc
Q 002325 57 DRLTISRMVS 66 (936)
Q Consensus 57 ~rl~isr~vs 66 (936)
+.++|+|.+.
T Consensus 96 ~~~~i~r~~~ 105 (1179)
T TIGR02168 96 SEISITRRLY 105 (1179)
T ss_pred CeEEEEEEEe
Confidence 4578888763
No 19
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=69.75 E-value=2.6e+02 Score=33.83 Aligned_cols=49 Identities=24% Similarity=0.328 Sum_probs=39.0
Q ss_pred HHHHhHHHHhhccchHHHHHHHHHHHHHHhhcccchhhcCccHHHHHHHHHH
Q 002325 875 DLQKAEAEVDLLGDEVDTLSGLLEKIYIALDHYSSVLQHYPGIMEILRLVRR 926 (936)
Q Consensus 875 nLqKAEaEVDLLGDeVd~LLsLLeKIYiALDHYSPVLQhYpGI~Eil~likk 926 (936)
++..|++.++-+.+++|+|-+.|+|=+-|=+ -|-+++|.+.+.+.-+++
T Consensus 272 ~l~~~~~~~~~i~~~Id~lYd~le~E~~Ak~---~V~~~~~~l~~~l~~~~~ 320 (560)
T PF06160_consen 272 ELDEVEEENEEIEERIDQLYDILEKEVEAKK---YVEKNLKELYEYLEHAKE 320 (560)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHhHHHHHHHHHHHHH
Confidence 6778999999999999999999999887754 466777777776665554
No 20
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=69.49 E-value=1.6e+02 Score=31.28 Aligned_cols=160 Identities=17% Similarity=0.182 Sum_probs=101.7
Q ss_pred hhhhhhhhHHHHhhhhhhhHhHhHhhhhcccccccccccHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Q 002325 731 EKDLSKSLSQELSHLRDETSRQQILISKSSKEFNDLKGNLTDALEQIEQYKLEVHDLKQKLELAMKELRDTNEETRKQVQ 810 (936)
Q Consensus 731 ~~~~~elv~qel~~Lr~~~~~q~~lise~~~e~~~~~~~l~~aleqi~~~K~el~~L~~~L~~~s~~LkE~~~e~~kQLe 810 (936)
-+..++-+.-|...||..-..|..-|...++.-+.+|.-+..--+.+..++..+.........+...+++.+.+..+
T Consensus 24 lq~~l~~l~~ENk~Lk~lq~Rq~kAL~k~e~~e~~Lpqll~~h~eEvr~Lr~~LR~~q~~~r~~~~klk~~~~el~k--- 100 (194)
T PF15619_consen 24 LQRKLQELRKENKTLKQLQKRQEKALQKYEDTEAELPQLLQRHNEEVRVLRERLRKSQEQERELERKLKDKDEELLK--- 100 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---
Confidence 34456667777888998888999999888888888888888888888888888888888888888888887777211
Q ss_pred HHHHHHHhHHHHHH-----HHHHHHHHhHHHhhhhhhhhHHhhHHHHHHHHHHhhhhhHHHHHHHHhhhHHHHhHHHHhh
Q 002325 811 LLVIFIQGLSKTVA-----DFECRAVADIERCNFRLDSLSSQSKRLILKANVITRTGLSYKQKLERRCSDLQKAEAEVDL 885 (936)
Q Consensus 811 silvsi~~lsk~f~-----dfE~~v~~kle~n~~Rle~L~~Q~~~Lv~qa~~Lkkk~l~YKq~le~RcsnLqKAEaEVDL 885 (936)
+-.-+..|.+... +- .....++.....+++.-......|-+++- =....|++.+-.-..-...|.++|..
T Consensus 101 -~~~~l~~L~~L~~dknL~eR-eeL~~kL~~~~~~l~~~~~ki~~Lek~le---L~~k~~~rql~~e~kK~~~~~~~~~~ 175 (194)
T PF15619_consen 101 -TKDELKHLKKLSEDKNLAER-EELQRKLSQLEQKLQEKEKKIQELEKQLE---LENKSFRRQLASEKKKHKEAQEEVKS 175 (194)
T ss_pred -HHHHHHHHHHHHHcCCchhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 1111112222111 11 11222333344444444444444444422 22334555555555566778889999
Q ss_pred ccchHHHHHHHHH
Q 002325 886 LGDEVDTLSGLLE 898 (936)
Q Consensus 886 LGDeVd~LLsLLe 898 (936)
|-++|+.|-+-|.
T Consensus 176 l~~ei~~L~~klk 188 (194)
T PF15619_consen 176 LQEEIQRLNQKLK 188 (194)
T ss_pred HHHHHHHHHHHHH
Confidence 9999998876653
No 21
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=69.28 E-value=3.7e+02 Score=35.44 Aligned_cols=167 Identities=16% Similarity=0.194 Sum_probs=93.0
Q ss_pred HHHhhhhhhhHhHhHhhhhcccccccccccHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhHHH---HHHHHHHHHHHH
Q 002325 740 QELSHLRDETSRQQILISKSSKEFNDLKGNLTDALEQIEQYKLEVHDLKQKLELAMKELRDTNEE---TRKQVQLLVIFI 816 (936)
Q Consensus 740 qel~~Lr~~~~~q~~lise~~~e~~~~~~~l~~aleqi~~~K~el~~L~~~L~~~s~~LkE~~~e---~~kQLesilvsi 816 (936)
...+.+|..-..-+.-|.+-..+.++....+..+.+.+..++-+..++.....-+-...++.... .++|+.-+=.-.
T Consensus 309 ~k~~~~r~k~teiea~i~~~~~e~~~~d~Ei~~~r~~~~~~~re~~~~~~~~~~~~n~i~~~k~~~d~l~k~I~~~~~~~ 388 (1074)
T KOG0250|consen 309 GKIEEARQKLTEIEAKIGELKDEVDAQDEEIEEARKDLDDLRREVNDLKEEIREIENSIRKLKKEVDRLEKQIADLEKQT 388 (1074)
T ss_pred HHHHHHhhhhhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344443333444444455555566666666666666666666666666555444443333322 333322211111
Q ss_pred HhHHHHHHHHHHHHHHhHHHhhhhhhhhHHhhHHHHHHHHHHhhhhhHHHHHH---HHhhhHHHHhHH------------
Q 002325 817 QGLSKTVADFECRAVADIERCNFRLDSLSSQSKRLILKANVITRTGLSYKQKL---ERRCSDLQKAEA------------ 881 (936)
Q Consensus 817 ~~lsk~f~dfE~~v~~kle~n~~Rle~L~~Q~~~Lv~qa~~Lkkk~l~YKq~l---e~RcsnLqKAEa------------ 881 (936)
-+...---..+.+|++.-..+.+.+..|.+.|.+.-+.++.+...=+... +++.-+|+|+-.
T Consensus 389 ---~~~~~~~~~e~e~k~~~L~~evek~e~~~~~L~~e~~~~~~~~~~~~ee~~~i~~~i~~l~k~i~~~~~~l~~lk~~ 465 (1074)
T KOG0250|consen 389 ---NNELGSELEERENKLEQLKKEVEKLEEQINSLREELNEVKEKAKEEEEEKEHIEGEILQLRKKIENISEELKDLKKT 465 (1074)
T ss_pred ---HhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 01111112223445666666777777777777777777766655544433 333444444321
Q ss_pred ---HHhhccchHHHHHHHHHHHHHHhhcccch
Q 002325 882 ---EVDLLGDEVDTLSGLLEKIYIALDHYSSV 910 (936)
Q Consensus 882 ---EVDLLGDeVd~LLsLLeKIYiALDHYSPV 910 (936)
.|---|+.|..||..++.-|--. ||.|+
T Consensus 466 k~dkvs~FG~~m~~lL~~I~r~~~~f-~~~P~ 496 (1074)
T KOG0250|consen 466 KTDKVSAFGPNMPQLLRAIERRKRRF-QTPPK 496 (1074)
T ss_pred ccchhhhcchhhHHHHHHHHHHHhcC-CCCCC
Confidence 37789999999999999999887 77775
No 22
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=67.95 E-value=3e+02 Score=33.83 Aligned_cols=29 Identities=28% Similarity=0.393 Sum_probs=18.5
Q ss_pred cccccccHHHHHHHHHHhHHHHHHHHHHH
Q 002325 763 FNDLKGNLTDALEQIEQYKLEVHDLKQKL 791 (936)
Q Consensus 763 ~~~~~~~l~~aleqi~~~K~el~~L~~~L 791 (936)
.+.+.....++-+.+..++..+..|.+..
T Consensus 208 ~~~L~~q~~e~~~ri~~LEedi~~l~qk~ 236 (546)
T PF07888_consen 208 RESLKEQLAEARQRIRELEEDIKTLTQKE 236 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456666666677777766666666655
No 23
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=66.94 E-value=2.9e+02 Score=33.39 Aligned_cols=152 Identities=18% Similarity=0.325 Sum_probs=102.2
Q ss_pred hhhhHHHHhhhhhhhHhHhHhhhhcccccccccccHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhHHH---HHHHHHH
Q 002325 735 SKSLSQELSHLRDETSRQQILISKSSKEFNDLKGNLTDALEQIEQYKLEVHDLKQKLELAMKELRDTNEE---TRKQVQL 811 (936)
Q Consensus 735 ~elv~qel~~Lr~~~~~q~~lise~~~e~~~~~~~l~~aleqi~~~K~el~~L~~~L~~~s~~LkE~~~e---~~kQLes 811 (936)
+..+..++..+......-..-|.+....|+.+...+.+..+++...+.+..++...|...+.+-+++.++ ++..|..
T Consensus 346 ~~~l~~~l~~l~~~~~~~~~~i~~~~~~yS~i~~~l~~~~~~l~~ie~~q~~~~~~l~~L~~dE~~Ar~~l~~~~~~l~~ 425 (560)
T PF06160_consen 346 VRELEKQLKELEKRYEDLEERIEEQQVPYSEIQEELEEIEEQLEEIEEEQEEINESLQSLRKDEKEAREKLQKLKQKLRE 425 (560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555666666666666778888999999999999999999999888888888888888777777766 4444544
Q ss_pred HHHH-----HHhHHHHHHHHHHHHHHhHHHhhhhhhhhHHhhHHHHHHHHHHhhhhhHHHHHHHHhhhHHHHhHHHHhhc
Q 002325 812 LVIF-----IQGLSKTVADFECRAVADIERCNFRLDSLSSQSKRLILKANVITRTGLSYKQKLERRCSDLQKAEAEVDLL 886 (936)
Q Consensus 812 ilvs-----i~~lsk~f~dfE~~v~~kle~n~~Rle~L~~Q~~~Lv~qa~~Lkkk~l~YKq~le~RcsnLqKAEaEVDLL 886 (936)
+-.. +++++..|.++-..+...+++....|....--+.-+ .+-|..|...||-|
T Consensus 426 ikR~lek~nLPGlp~~y~~~~~~~~~~i~~l~~~L~~~pinm~~v---------------------~~~l~~a~~~v~~L 484 (560)
T PF06160_consen 426 IKRRLEKSNLPGLPEDYLDYFFDVSDEIEELSDELNQVPINMDEV---------------------NKQLEEAEDDVETL 484 (560)
T ss_pred HHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHH---------------------HHHHHHHHHHHHHH
Confidence 4222 478888888887777776665544444332222222 22356677777777
Q ss_pred cchHHHHHH---HHHHHHHHhhcc
Q 002325 887 GDEVDTLSG---LLEKIYIALDHY 907 (936)
Q Consensus 887 GDeVd~LLs---LLeKIYiALDHY 907 (936)
-++++.++. |.+++..--.+|
T Consensus 485 ~~~t~~li~~A~L~E~~iQYaNRY 508 (560)
T PF06160_consen 485 EEKTEELIDNATLAEQLIQYANRY 508 (560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcc
Confidence 777777764 445555444455
No 24
>COG0497 RecN ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=65.25 E-value=2.3e+02 Score=34.85 Aligned_cols=130 Identities=24% Similarity=0.272 Sum_probs=74.3
Q ss_pred HHHHHHHHHHHHHHh---hHh--hh-hHHHHHHHhHHHHHHHHHHHHHHhhHHHHHHH------HHHHHHHHHHhhhhhh
Q 002325 668 FREALKEAEVKLNEL---NQK--YF-METELRRLEVAEKEKLKQETRLLSSLVEEKEN------LVSEAVATLLEEKDLS 735 (936)
Q Consensus 668 ~ke~vkEae~~L~~~---~~k--~~-lEee~l~l~~~e~eKlk~~i~~l~sLv~EKE~------lv~~a~~~l~~~~~~~ 735 (936)
+++..+.|+..-+++ -.+ .. -+.+.+++.+.|-++++....--+.|..++.. +...+..++
T Consensus 159 ~~~~y~~w~~~~~~l~~~~~~~~e~~~~~d~L~fq~~Ele~~~l~~gE~e~L~~e~~rLsn~ekl~~~~~~a~------- 231 (557)
T COG0497 159 YQEAYQAWKQARRELEDLQEKERERAQRADLLQFQLEELEELNLQPGEDEELEEERKRLSNSEKLAEAIQNAL------- 231 (557)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHhhHHHHHHHHHHHH-------
Confidence 455666666555322 222 22 22667777777777777655555555554443 333333322
Q ss_pred hhhHHHH---hhhhhhhHhHhHh--hhhcccccccccccHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhHHH
Q 002325 736 KSLSQEL---SHLRDETSRQQIL--ISKSSKEFNDLKGNLTDALEQIEQYKLEVHDLKQKLELAMKELRDTNEE 804 (936)
Q Consensus 736 elv~qel---~~Lr~~~~~q~~l--ise~~~e~~~~~~~l~~aleqi~~~K~el~~L~~~L~~~s~~LkE~~~e 804 (936)
+.++.+- +.+.....--+.| +++.+..|..+...+.+|+-++...-.++...-+.|..-+..|.++++.
T Consensus 232 ~~L~ge~~~~~~~~~l~~a~~~l~~~~~~d~~l~~~~~~l~ea~~~l~ea~~el~~~~~~le~Dp~~L~~ve~R 305 (557)
T COG0497 232 ELLSGEDDTVSALSLLGRALEALEDLSEYDGKLSELAELLEEALYELEEASEELRAYLDELEFDPNRLEEVEER 305 (557)
T ss_pred HHHhCCCCchhHHHHHHHHHHHHHHhhccChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Confidence 1222110 1111111111222 6666777777888888888888888788888888888888888888777
No 25
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=61.49 E-value=4.4e+02 Score=33.54 Aligned_cols=92 Identities=17% Similarity=0.161 Sum_probs=58.9
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHhhhhhhhHhHhHhhhhcccccccccccH------H--HHHHHH
Q 002325 706 ETRLLSSLVEEKENLVSEAVATLLEEKDLSKSLSQELSHLRDETSRQQILISKSSKEFNDLKGNL------T--DALEQI 777 (936)
Q Consensus 706 ~i~~l~sLv~EKE~lv~~a~~~l~~~~~~~elv~qel~~Lr~~~~~q~~lise~~~e~~~~~~~l------~--~aleqi 777 (936)
+...|...+..|+..-.....++.+|.........+++.+|.-...-+.-.......||...+.+ . +|.++.
T Consensus 503 E~~~lk~il~~Kee~Ek~~~E~I~k~~ae~~rq~~~~~~sr~~~~~le~~~~a~qat~d~a~~Dlqk~nrlkQdear~~~ 582 (961)
T KOG4673|consen 503 EENKLKSILRDKEETEKLLQETIEKHQAELTRQKDYYSNSRALAAALEAQALAEQATNDEARSDLQKENRLKQDEARERE 582 (961)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhhhhHHHHhhhhhhHHHHHH
Confidence 44445555555555555555666667777777777777777655554544555556677777744 2 566667
Q ss_pred HHhHHHHHHHHHHHHHHHHH
Q 002325 778 EQYKLEVHDLKQKLELAMKE 797 (936)
Q Consensus 778 ~~~K~el~~L~~~L~~~s~~ 797 (936)
..|=.++.+|++.|..+-..
T Consensus 583 ~~lvqqv~dLR~~L~~~Eq~ 602 (961)
T KOG4673|consen 583 SMLVQQVEDLRQTLSKKEQQ 602 (961)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 77777788888887766555
No 26
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=58.32 E-value=6.1e+02 Score=34.20 Aligned_cols=82 Identities=17% Similarity=0.187 Sum_probs=41.9
Q ss_pred HHhHhHHHHHHHHHHHHHHHHHHHhhHhhhhHHHHHHHhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhhhhhhhh
Q 002325 658 VIMQDLYEVIFREALKEAEVKLNELNQKYFMETELRRLEVAEKEKLKQETRLLSSLVEEKENLVSEAVATLLEEKDLSKS 737 (936)
Q Consensus 658 ~i~ed~c~Vi~ke~vkEae~~L~~~~~k~~lEee~l~l~~~e~eKlk~~i~~l~sLv~EKE~lv~~a~~~l~~~~~~~el 737 (936)
+.+..-...-+..+.+|++..|..+....+--.|+....-..-+|.+-....+++-.+|=++|+++..+=|-+....++.
T Consensus 1414 ~~~A~~~~~~l~~~~ae~eq~~~~v~ea~~~aseA~~~Aq~~~~~a~as~~q~~~s~~el~~Li~~v~~Flt~~~adp~s 1493 (1758)
T KOG0994|consen 1414 LLMAGDADTQLRSKLAEAEQTLSMVREAKLSASEAQQSAQRALEQANASRSQMEESNRELRNLIQQVRDFLTQPDADPDS 1493 (1758)
T ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHH
Confidence 34444455556667777776664333331111122111111122223333344555566778888888877777776665
Q ss_pred hH
Q 002325 738 LS 739 (936)
Q Consensus 738 v~ 739 (936)
+.
T Consensus 1494 i~ 1495 (1758)
T KOG0994|consen 1494 IE 1495 (1758)
T ss_pred HH
Confidence 54
No 27
>PF04048 Sec8_exocyst: Sec8 exocyst complex component specific domain; InterPro: IPR007191 Sec8 is a component of the exocyst complex involved in the docking of exocystic vesicles with a fusion site on the plasma membrane. The exocyst complex is composed of Sec3, Sec5, Sec6, Sec8, Sec10, Sec15, Exo70 and Exo84.; GO: 0006904 vesicle docking involved in exocytosis, 0015031 protein transport, 0000145 exocyst
Probab=58.14 E-value=1.7e+02 Score=29.20 Aligned_cols=98 Identities=14% Similarity=0.161 Sum_probs=67.8
Q ss_pred HHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhHHHhhhhhhhhHHhhHHHHHHHHHHhh
Q 002325 781 KLEVHDLKQKLELAMKELRDTNEETRKQVQLLVIFIQGLSKTVADFECRAVADIERCNFRLDSLSSQSKRLILKANVITR 860 (936)
Q Consensus 781 K~el~~L~~~L~~~s~~LkE~~~e~~kQLesilvsi~~lsk~f~dfE~~v~~kle~n~~Rle~L~~Q~~~Lv~qa~~Lkk 860 (936)
..++.++...++ ..|+++.+++-....+.+.++..++..+.+=..++. ....+|...+..+..-......|-.
T Consensus 42 ~~~f~~~~~~~~---~~L~~vV~eh~q~Fn~sI~sy~~i~~~i~~sq~~i~----~lK~~L~~ak~~L~~~~~eL~~L~~ 114 (142)
T PF04048_consen 42 YQEFEELKKRIE---KALQEVVNEHYQGFNSSIGSYSQILSSISESQERIR----ELKESLQEAKSLLGCRREELKELWQ 114 (142)
T ss_pred HHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHhcCCHHHHHHHH
Confidence 355555555555 778888888777788888888777777776665554 3345566666666555566666777
Q ss_pred hhhHHHHHHHH--hhhHHHHhHHHHhh
Q 002325 861 TGLSYKQKLER--RCSDLQKAEAEVDL 885 (936)
Q Consensus 861 k~l~YKq~le~--RcsnLqKAEaEVDL 885 (936)
.+.-|++|++. ...+|+.++.+||=
T Consensus 115 ~s~~~~~mi~iL~~Ie~l~~vP~kie~ 141 (142)
T PF04048_consen 115 RSQEYKEMIEILDQIEELRQVPDKIES 141 (142)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHhc
Confidence 78889999874 67788888877763
No 28
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=56.61 E-value=3.6e+02 Score=33.31 Aligned_cols=93 Identities=18% Similarity=0.230 Sum_probs=54.0
Q ss_pred HHHhhhhhhhhHHhh----HHHHHHHHHHhhhhhHHHHHHHHhhhHHHHhHHHHhhccchH---HHHHHHHHHHHHHhhc
Q 002325 834 IERCNFRLDSLSSQS----KRLILKANVITRTGLSYKQKLERRCSDLQKAEAEVDLLGDEV---DTLSGLLEKIYIALDH 906 (936)
Q Consensus 834 le~n~~Rle~L~~Q~----~~Lv~qa~~Lkkk~l~YKq~le~RcsnLqKAEaEVDLLGDeV---d~LLsLLeKIYiALDH 906 (936)
++.+..|+.+|..|. .||+.....|+.....-.--...++..++....+..-+-.++ +-+..-|.+-|-.+.-
T Consensus 403 v~~s~~rl~~L~~qWe~~R~pL~~e~r~lk~~~~~~~~e~~~~~~~ik~~r~~~k~~~~e~~~Kee~~~qL~~e~e~~~k 482 (594)
T PF05667_consen 403 VEASEQRLVELAQQWEKHRAPLIEEYRRLKEKASNRESESKQKLQEIKELREEIKEIEEEIRQKEELYKQLVKELEKLPK 482 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 455666676666554 577777777776544333333334455555555544444444 3355556666666665
Q ss_pred ccchhhcCccHHHHHHHHHH
Q 002325 907 YSSVLQHYPGIMEILRLVRR 926 (936)
Q Consensus 907 YSPVLQhYpGI~Eil~likk 926 (936)
=.|---+--.|+||.+=|+|
T Consensus 483 ~~~Rs~Yt~RIlEIv~NI~K 502 (594)
T PF05667_consen 483 DVNRSAYTRRILEIVKNIRK 502 (594)
T ss_pred CCCHHHHHHHHHHHHHhHHH
Confidence 54444444578888887776
No 29
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=55.01 E-value=6.7e+02 Score=33.67 Aligned_cols=160 Identities=19% Similarity=0.209 Sum_probs=102.6
Q ss_pred ccHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH---hHHHhhhhhhhh
Q 002325 768 GNLTDALEQIEQYKLEVHDLKQKLELAMKELRDTNEETRKQVQLLVIFIQGLSKTVADFECRAVA---DIERCNFRLDSL 844 (936)
Q Consensus 768 ~~l~~aleqi~~~K~el~~L~~~L~~~s~~LkE~~~e~~kQLesilvsi~~lsk~f~dfE~~v~~---kle~n~~Rle~L 844 (936)
.-.+.+-..+..+..++.+|...+......|.+...++.+--+-+-.-+.++.+..+.+...+.+ ++.-.+++|+.|
T Consensus 433 ~~pe~~~~~i~~~~~ei~~L~~~~~~~~~~l~e~~~~l~~~t~~~~~e~~~~ekel~~~~~~~n~~~~e~~vaesel~~L 512 (1293)
T KOG0996|consen 433 KAPEKARIEIQKCQTEIEQLEELLEKEERELDEILDSLKQETEGIREEIEKLEKELMPLLKQVNEARSELDVAESELDIL 512 (1293)
T ss_pred hCchhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444555666677777777777766666655544443333333444466666666666655443 455567777777
Q ss_pred HHhhHHHHHHHHHHhhhhhH--------------HHHHHHHhhhHHHHhHHHHhhccchHHHHHHHHHHHHHHhhcccch
Q 002325 845 SSQSKRLILKANVITRTGLS--------------YKQKLERRCSDLQKAEAEVDLLGDEVDTLSGLLEKIYIALDHYSSV 910 (936)
Q Consensus 845 ~~Q~~~Lv~qa~~Lkkk~l~--------------YKq~le~RcsnLqKAEaEVDLLGDeVd~LLsLLeKIYiALDHYSPV 910 (936)
.+.-+...+++-.|+.+=+. .+.-|..+--.+..++.+++=+=-+.-.|-+.|.+..--+.-|+..
T Consensus 513 ~~~~~~~~~~~e~lk~~L~~~~~~~~e~~~~l~~~k~~l~~~k~e~~~~~k~l~~~~~e~~~~~~~~~~~rqrveE~ks~ 592 (1293)
T KOG0996|consen 513 LSRHETGLKKVEELKGKLLASSESLKEKKTELDDLKEELPSLKQELKEKEKELPKLRKEERNLKSQLNKLRQRVEEAKSS 592 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777777766666554333 2334555555777888888888888888888888888888888887
Q ss_pred hhcCccHHHHHHHHHHH
Q 002325 911 LQHYPGIMEILRLVRRE 927 (936)
Q Consensus 911 LQhYpGI~Eil~likke 927 (936)
++-..-=-.+|.-+.++
T Consensus 593 ~~~~~s~~kVl~al~r~ 609 (1293)
T KOG0996|consen 593 LSSSRSRNKVLDALMRL 609 (1293)
T ss_pred HHhhhhhhHHHHHHHHH
Confidence 77655545555555443
No 30
>PF11945 WASH_WAHD: WAHD domain of WASH complex; InterPro: IPR021854 This entry represents a component of the WASH complex. The WASH complex is present at the surface of endosomes and recruits and activates the Arp2/3 complex to induce actin polymerisation. The WASH complex plays a key role in the fission of tubules that serve as transport intermediates during endosome sorting []. The WASH complex's subunit structure: F-actin-capping protein subunit alpha (CAPZA1, CAPZA2 or CAPZA3), F-actin-capping protein subunit beta (CAPZB), WASH (WASH1, WASH2P, WASH3P, WASH4P, WASH5P or WASH6P), FAM21 (FAM21A, FAM21B or FAM21C), KIAA1033, KIAA0196 (strumpellin) and CCDC53. This entry represents the WASH subunit of the WASH complex. WASH genes duplicated to multiple chromosomal ends during primate evolution, with highest copy number reached in humans, whose WASH repertoires probably vary extensively among individuals []. It is therefore difficult to determine which gene is functional or not. The telomeric region of chromosome 9p is paralogous to the pericentromeric regions of chromosome 9 as well as to 2q. Paralogous regions contain 7 transcriptional units. Duplicated WASH genes are also present in the Xq/Yq pseudoautosomal region, as well as on chromosome 1 and 15. The chromosome 16 copy seems to be a pseudogene.
Probab=52.00 E-value=47 Score=37.33 Aligned_cols=56 Identities=18% Similarity=0.189 Sum_probs=49.9
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHhHHHhhhhhhhhHHhhHHHHHHHHHHhhh
Q 002325 806 RKQVQLLVIFIQGLSKTVADFECRAVADIERCNFRLDSLSSQSKRLILKANVITRT 861 (936)
Q Consensus 806 ~kQLesilvsi~~lsk~f~dfE~~v~~kle~n~~Rle~L~~Q~~~Lv~qa~~Lkkk 861 (936)
++.+..++.++..|.+++.|+..++..+++++..|++.+..+.+..-.++..|+..
T Consensus 17 eEti~qi~~aL~~L~~v~~diF~rI~~Rv~~~~~~l~~i~~Ri~~~qaKi~~l~gs 72 (297)
T PF11945_consen 17 EETILQIADALEYLDKVSNDIFSRISARVERNRERLQAIQQRIEVAQAKIEKLQGS 72 (297)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 45677788899999999999999999999999999999999999888888877654
No 31
>PRK11637 AmiB activator; Provisional
Probab=51.55 E-value=4.4e+02 Score=30.49 Aligned_cols=60 Identities=13% Similarity=0.077 Sum_probs=29.0
Q ss_pred hhhHHhhHHHHHHHHHHhhhhhHHHHHHHHhhhHHHHhHHHHhhccchHHHHHHHHHHHH
Q 002325 842 DSLSSQSKRLILKANVITRTGLSYKQKLERRCSDLQKAEAEVDLLGDEVDTLSGLLEKIY 901 (936)
Q Consensus 842 e~L~~Q~~~Lv~qa~~Lkkk~l~YKq~le~RcsnLqKAEaEVDLLGDeVd~LLsLLeKIY 901 (936)
..+..+...+..+-..|...---.++.+..=-.+++..++++.=|..+...|-.+|.++-
T Consensus 194 ~~l~~~~~e~~~~k~~L~~~k~e~~~~l~~L~~~~~~~~~~l~~l~~~~~~L~~~I~~l~ 253 (428)
T PRK11637 194 SQQKTLLYEQQAQQQKLEQARNERKKTLTGLESSLQKDQQQLSELRANESRLRDSIARAE 253 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333343333333334444444555555566666666666666666553
No 32
>PF04048 Sec8_exocyst: Sec8 exocyst complex component specific domain; InterPro: IPR007191 Sec8 is a component of the exocyst complex involved in the docking of exocystic vesicles with a fusion site on the plasma membrane. The exocyst complex is composed of Sec3, Sec5, Sec6, Sec8, Sec10, Sec15, Exo70 and Exo84.; GO: 0006904 vesicle docking involved in exocytosis, 0015031 protein transport, 0000145 exocyst
Probab=50.13 E-value=1.2e+02 Score=30.17 Aligned_cols=71 Identities=18% Similarity=0.276 Sum_probs=37.2
Q ss_pred hhhcccccccccccHHHHHHHHHHhHHHHHHHHHHHHHHHHH-------hhhhHHH--HHHHHHHHHHHHHhHHHHHHHH
Q 002325 756 ISKSSKEFNDLKGNLTDALEQIEQYKLEVHDLKQKLELAMKE-------LRDTNEE--TRKQVQLLVIFIQGLSKTVADF 826 (936)
Q Consensus 756 ise~~~e~~~~~~~l~~aleqi~~~K~el~~L~~~L~~~s~~-------LkE~~~e--~~kQLesilvsi~~lsk~f~df 826 (936)
+.+.-..|+...+....++..+..++..+..++.+|..+... |+++..+ .-+++=.+|..|..+..+-..+
T Consensus 60 V~eh~q~Fn~sI~sy~~i~~~i~~sq~~i~~lK~~L~~ak~~L~~~~~eL~~L~~~s~~~~~mi~iL~~Ie~l~~vP~ki 139 (142)
T PF04048_consen 60 VNEHYQGFNSSIGSYSQILSSISESQERIRELKESLQEAKSLLGCRREELKELWQRSQEYKEMIEILDQIEELRQVPDKI 139 (142)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 344445566666666666666666666666666666655555 4444443 2222334455555554443333
No 33
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=49.00 E-value=4.2e+02 Score=33.39 Aligned_cols=14 Identities=21% Similarity=0.387 Sum_probs=8.5
Q ss_pred HHHhhccceEEeee
Q 002325 51 YWDDINDRLTISRM 64 (936)
Q Consensus 51 ~~edi~~rl~isr~ 64 (936)
+|+..+-||+.-+.
T Consensus 46 vWd~~e~~l~~~nl 59 (717)
T PF10168_consen 46 VWDSSECCLLTVNL 59 (717)
T ss_pred EEECCCCEEEEEee
Confidence 46777766655543
No 34
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=47.11 E-value=8.1e+02 Score=32.31 Aligned_cols=32 Identities=19% Similarity=0.218 Sum_probs=18.3
Q ss_pred hhhhhhHHhhHHHHHHHHH----------HhhhhhHHHHHHH
Q 002325 839 FRLDSLSSQSKRLILKANV----------ITRTGLSYKQKLE 870 (936)
Q Consensus 839 ~Rle~L~~Q~~~Lv~qa~~----------Lkkk~l~YKq~le 870 (936)
-|..+|++|+-.+..|.-. +.+....||++|-
T Consensus 532 elva~Lqdqlqe~~dq~~Sseees~q~~s~~~et~dyk~~fa 573 (1243)
T KOG0971|consen 532 ELVAHLQDQLQELTDQQESSEEESQQPPSVDPETFDYKIKFA 573 (1243)
T ss_pred HHHHHHHHHHHHHHhhhhhhHHHhcCCCCCchhhhHHHHHHH
Confidence 3444555555555444332 3466778998885
No 35
>PF04949 Transcrip_act: Transcriptional activator; InterPro: IPR007033 Golgins are a family of coiled-coil proteins associated with the Golgi apparatus necessary for tethering events in membrane fusion and as structural supports for Golgi cisternae []. This entry represents proteins annotated as RAB6-interacting golgins.
Probab=46.84 E-value=44 Score=34.66 Aligned_cols=100 Identities=31% Similarity=0.398 Sum_probs=67.5
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHhhHHHHHHHHHHHhhcCCCCCCccccccHHHhhhHHHHHHhHH---HHHhhcCC-
Q 002325 366 KEELVNHFKAEMTKMKRIHELKVTEMTEDLFALKREYLKERGSSLPIKKDKEFDILRKKIPEVLSKLD---DILVENEK- 441 (936)
Q Consensus 366 keeli~yfk~em~KMkR~HEs~lqeKTEElF~lKrE~lkerGsSl~lrkdkEfe~lRKKIpeVIsKLD---~Ii~~n~k- 441 (936)
+|+.|---|-|+..=.-.+-+.++|.|-.|-.++.|+ .+..-|.|+ |.+.+||||..|=--|+ .+-...++
T Consensus 39 kEeeIErkKmeVrekVq~~LgrveEetkrLa~ireeL---E~l~dP~Rk--Ev~~vRkkID~vNreLkpl~~~cqKKEkE 113 (159)
T PF04949_consen 39 KEEEIERKKMEVREKVQAQLGRVEEETKRLAEIREEL---EVLADPMRK--EVEMVRKKIDSVNRELKPLGQSCQKKEKE 113 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH---HhhccchHH--HHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 3444444455555545566778889999999999988 244357664 78899999987754443 44444444
Q ss_pred ----CCccccccccccCchhhhhHHHhhhhhhh
Q 002325 442 ----LPAFSENAEGLCNFKDRLESLLLENRQLR 470 (936)
Q Consensus 442 ----lp~f~~~~~~~~~l~dR~~sl~~EN~qLr 470 (936)
+-+|+..+.+-|-|-.|+-.|+++...+|
T Consensus 114 ykealea~nEknkeK~~Lv~~L~eLv~eSE~~r 146 (159)
T PF04949_consen 114 YKEALEAFNEKNKEKAQLVTRLMELVSESERLR 146 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 23677777777888888888887776654
No 36
>PF10191 COG7: Golgi complex component 7 (COG7); InterPro: IPR019335 The conserved oligomeric Golgi (COG) complex is an eight-subunit (Cog1-8) peripheral Golgi protein involved in membrane trafficking and glycoconjugate synthesis []. COG7 is required for normal Golgi morphology and trafficking. Mutation in COG7 causes a congenital disorder of glycosylation [].
Probab=44.89 E-value=5e+02 Score=32.81 Aligned_cols=154 Identities=20% Similarity=0.216 Sum_probs=77.0
Q ss_pred hhhhhhHHHHhhhhhhhHhHhHhhhhcccccccccccHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Q 002325 733 DLSKSLSQELSHLRDETSRQQILISKSSKEFNDLKGNLTDALEQIEQYKLEVHDLKQKLELAMKELRDTNEETRKQVQLL 812 (936)
Q Consensus 733 ~~~elv~qel~~Lr~~~~~q~~lise~~~e~~~~~~~l~~aleqi~~~K~el~~L~~~L~~~s~~LkE~~~e~~kQLesi 812 (936)
.+++.++++...||.....=..=|. .+.+...+.++. . .+|...+.+++.+.+.|+|++.=
T Consensus 70 ~ev~~l~~ea~~L~~~~~~v~~~~~-------~~e~~t~~s~~~---L-~~ld~vK~rm~~a~~~L~EA~~w-------- 130 (766)
T PF10191_consen 70 REVDRLRQEAASLQEQMASVQEEIK-------AVEQDTAQSMAQ---L-AELDSVKSRMEAARETLQEADNW-------- 130 (766)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh-------hhhccHHHHHHH---H-HHHHHHHHHHHHHHHHHHHHHhH--------
Confidence 3566677777777765533222111 122222233332 2 55777889999999999997654
Q ss_pred HHHHHhHHHHHHHHHHHHHH-hHHHhhhhhhhhHHhhHHHHHHH---HHHhhhhhHHHHHHHHhhhHHHHhHHHHhhccc
Q 002325 813 VIFIQGLSKTVADFECRAVA-DIERCNFRLDSLSSQSKRLILKA---NVITRTGLSYKQKLERRCSDLQKAEAEVDLLGD 888 (936)
Q Consensus 813 lvsi~~lsk~f~dfE~~v~~-kle~n~~Rle~L~~Q~~~Lv~qa---~~Lkkk~l~YKq~le~RcsnLqKAEaEVDLLGD 888 (936)
+..+.+++..+.. .+.....||..|+.-+.-+..-. ...+.-+ .+|.+||.-.+ -.. |.-|-.
T Consensus 131 -------~~l~~~v~~~~~~~d~~~~a~~l~~m~~sL~~l~~~pd~~~r~~~le-~l~nrLEa~vs----p~L-v~al~~ 197 (766)
T PF10191_consen 131 -------STLSAEVDDLFESGDIAKIADRLAEMQRSLAVLQDVPDYEERRQQLE-ALKNRLEALVS----PQL-VQALNS 197 (766)
T ss_pred -------HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHcCCCchhHHHHHHH-HHHHHHHHHhh----HHH-HHHHHh
Confidence 2222222222222 44555555666655554443211 1111111 22333333221 111 222222
Q ss_pred h-HHHHHHHHHHHHHHhhcccchhhcCccHHH
Q 002325 889 E-VDTLSGLLEKIYIALDHYSSVLQHYPGIME 919 (936)
Q Consensus 889 e-Vd~LLsLLeKIYiALDHYSPVLQhYpGI~E 919 (936)
. ||.. .-+-+||..+++.+-.+++|-.+.-
T Consensus 198 ~~~~~~-~~~~~if~~i~R~~~l~~~Y~~~r~ 228 (766)
T PF10191_consen 198 RDVDAA-KEYVKIFSSIGREPQLEQYYCKCRK 228 (766)
T ss_pred cCHHHH-HHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 2 3333 3344899999999999999987653
No 37
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=44.47 E-value=4.8e+02 Score=32.91 Aligned_cols=40 Identities=18% Similarity=0.246 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHhHHHhhhhhhhhH
Q 002325 806 RKQVQLLVIFIQGLSKTVADFECRAVADIERCNFRLDSLS 845 (936)
Q Consensus 806 ~kQLesilvsi~~lsk~f~dfE~~v~~kle~n~~Rle~L~ 845 (936)
.+.++.++..+..-.....+=|..+.+.+++....+..|.
T Consensus 613 ~~R~~~vl~~l~~~~P~LS~AEr~~~~EL~~~~~~l~~l~ 652 (717)
T PF10168_consen 613 MKRVDRVLQLLNSQLPVLSEAEREFKKELERMKDQLQDLK 652 (717)
T ss_pred HHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444443333344445555544444444444433
No 38
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=43.47 E-value=9.1e+02 Score=31.85 Aligned_cols=15 Identities=13% Similarity=0.160 Sum_probs=6.5
Q ss_pred ccchhhcCccHHHHH
Q 002325 907 YSSVLQHYPGIMEIL 921 (936)
Q Consensus 907 YSPVLQhYpGI~Eil 921 (936)
...-++.+++-.+.+
T Consensus 479 ~~~~l~~~~~~~~~l 493 (1163)
T COG1196 479 LEKELSSLEARLDRL 493 (1163)
T ss_pred HHHHHHHHHHHHHHH
Confidence 334444555443333
No 39
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=42.93 E-value=5.1e+02 Score=28.76 Aligned_cols=50 Identities=24% Similarity=0.236 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHhHHHhhhhhhhhHHhhHHHHHH
Q 002325 805 TRKQVQLLVIFIQGLSKTVADFECRAVADIERCNFRLDSLSSQSKRLILK 854 (936)
Q Consensus 805 ~~kQLesilvsi~~lsk~f~dfE~~v~~kle~n~~Rle~L~~Q~~~Lv~q 854 (936)
.+++....-..+..+-+-|.+.+..+...+....--...+.+++.+|+..
T Consensus 122 l~~~i~~l~~~~~~~e~~~~e~~~~~e~e~~~i~e~~~~~~~~~~~L~~~ 171 (239)
T COG1579 122 LEKEIEDLKERLERLEKNLAEAEARLEEEVAEIREEGQELSSKREELKEK 171 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44445555555666666666666666655544444344455555555544
No 40
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=41.77 E-value=9.4e+02 Score=31.52 Aligned_cols=68 Identities=25% Similarity=0.146 Sum_probs=40.3
Q ss_pred HHHHHHHHHHHHH---HhhHhhhhHHHHHHHhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhhhhhh
Q 002325 668 FREALKEAEVKLN---ELNQKYFMETELRRLEVAEKEKLKQETRLLSSLVEEKENLVSEAVATLLEEKDLS 735 (936)
Q Consensus 668 ~ke~vkEae~~L~---~~~~k~~lEee~l~l~~~e~eKlk~~i~~l~sLv~EKE~lv~~a~~~l~~~~~~~ 735 (936)
++..+.+.+++++ ....+.+.++|-++-+-+.-..-.+......-+++|.++-.+..+....+++..+
T Consensus 363 ~~~ql~~le~~~~e~q~~~qe~~~e~eqLr~elaql~a~r~q~eka~~~~ee~e~~~l~~e~ry~klkek~ 433 (980)
T KOG0980|consen 363 YENQLLALEGELQEQQREAQENREEQEQLRNELAQLLASRTQLEKAQVLVEEAENKALAAENRYEKLKEKY 433 (980)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 4455666666664 4445566667655555544444444555555557888887777777655555444
No 41
>PRK02224 chromosome segregation protein; Provisional
Probab=41.05 E-value=8.2e+02 Score=30.64 Aligned_cols=10 Identities=20% Similarity=0.142 Sum_probs=5.3
Q ss_pred ccccchhHHH
Q 002325 650 FEDCDMESVI 659 (936)
Q Consensus 650 ~e~~~mEs~i 659 (936)
|.+...+.++
T Consensus 461 ~~~~~~~~~~ 470 (880)
T PRK02224 461 VEGSPHVETI 470 (880)
T ss_pred CCCcchhhhH
Confidence 5555554444
No 42
>PF13870 DUF4201: Domain of unknown function (DUF4201)
Probab=40.53 E-value=4.2e+02 Score=27.05 Aligned_cols=119 Identities=20% Similarity=0.148 Sum_probs=65.7
Q ss_pred HHHHHHHHHHHHHHHHhhhhHHH--HHHHHHHHH--HHHHhHHHHHHHHHHHHHHhHHHhhhhhhhhHHhhH-------H
Q 002325 782 LEVHDLKQKLELAMKELRDTNEE--TRKQVQLLV--IFIQGLSKTVADFECRAVADIERCNFRLDSLSSQSK-------R 850 (936)
Q Consensus 782 ~el~~L~~~L~~~s~~LkE~~~e--~~kQLesil--vsi~~lsk~f~dfE~~v~~kle~n~~Rle~L~~Q~~-------~ 850 (936)
.++.+++-.+-...+.+..+.++ ..+++--.+ +=|..|--....+-. +|+.-+.-|..|+..+. |
T Consensus 6 ~~i~~~Rl~~~~lk~~l~k~~~ql~~ke~lge~L~~iDFeqLkien~~l~~----kIeERn~eL~~Lk~~~~~~v~~L~h 81 (177)
T PF13870_consen 6 NEISKLRLKNITLKHQLAKLEEQLRQKEELGEGLHLIDFEQLKIENQQLNE----KIEERNKELLKLKKKIGKTVQILTH 81 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555555555555556555555 233332221 112222222222222 33333444445555444 4
Q ss_pred HHHHHHHHhhhhhHHHHHHHHhhhHHHHhHHHHhhccchHHHHHHHHHHHHHHh
Q 002325 851 LILKANVITRTGLSYKQKLERRCSDLQKAEAEVDLLGDEVDTLSGLLEKIYIAL 904 (936)
Q Consensus 851 Lv~qa~~Lkkk~l~YKq~le~RcsnLqKAEaEVDLLGDeVd~LLsLLeKIYiAL 904 (936)
.-++...+.....+.++.+..|+..+.++..+.--+--+-+.+-....++-...
T Consensus 82 ~keKl~~~~~~~~~l~~~l~~~~~~~~~~r~~l~~~k~~r~k~~~~~~~l~~~~ 135 (177)
T PF13870_consen 82 VKEKLHFLSEELERLKQELKDREEELAKLREELYRVKKERDKLRKQNKKLRQQG 135 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 444555555566777778888888888888888777777777777777765443
No 43
>KOG3091 consensus Nuclear pore complex, p54 component (sc Nup57) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=38.17 E-value=2.3e+02 Score=34.37 Aligned_cols=103 Identities=29% Similarity=0.404 Sum_probs=59.3
Q ss_pred HHHHHHhhcCCCCCCccccccHHHhhhHHHHHHhHHHHHhhcCCCCccccccccccCchhhhhHHHhhhhhhhhhh---h
Q 002325 398 LKREYLKERGSSLPIKKDKEFDILRKKIPEVLSKLDDILVENEKLPAFSENAEGLCNFKDRLESLLLENRQLRSLL---T 474 (936)
Q Consensus 398 lKrE~lkerGsSl~lrkdkEfe~lRKKIpeVIsKLD~Ii~~n~klp~f~~~~~~~~~l~dR~~sl~~EN~qLrdll---a 474 (936)
+|-|+++.||- ||..|- |.|| .|||.|+..=.. | --|+.|++.|+...+--++.+ +
T Consensus 397 ikqeilr~~G~--~L~~~E--E~Lr-------~Kldtll~~ln~-P---------nq~k~Rl~~L~e~~r~q~~~~~~~~ 455 (508)
T KOG3091|consen 397 IKQEILRKRGY--ALTPDE--EELR-------AKLDTLLAQLNA-P---------NQLKARLDELYEILRMQNSQLKLQE 455 (508)
T ss_pred HHHHHHhccCC--cCCccH--HHHH-------HHHHHHHHHhcC-h---------HHHHHHHHHHHHHHHhhcchhcccc
Confidence 57899999884 898884 3444 578888877544 3 238999999987654332211 1
Q ss_pred hhHHHhhhhhhhhchhHHHHHhhhhhHHHHHHHHHhhhhhhhhhhhHHHHHhHHHH
Q 002325 475 DKKNEVKRLSLKVSDTAEIMLQRSLTEENLVKRIGNLQGALDDAHIEASITEGVYK 530 (936)
Q Consensus 475 dk~kevk~LS~qvSdA~~k~sq~~~~Ee~L~~qI~kL~~d~ED~~IE~~IrE~VYk 530 (936)
.-..|.. ...|-.++..++. +-+.+-+.=++.|+||+. -.+.|++--
T Consensus 456 ~~~iD~~----~~~e~~e~lt~~~---e~l~~Lv~Ilk~d~edi~--~~l~E~~~~ 502 (508)
T KOG3091|consen 456 SYWIDFD----KLIEMKEHLTQEQ---EALTKLVNILKGDQEDIK--HQLIEDLEI 502 (508)
T ss_pred ceeechh----hhHHHHHHHHHHH---HHHHHHHHHHHhHHHHHH--HHHHhhHHH
Confidence 1111111 1112223333322 456667777889999986 334444433
No 44
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=37.44 E-value=1.1e+03 Score=31.29 Aligned_cols=120 Identities=16% Similarity=0.191 Sum_probs=60.3
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHhhhhhhhHhHhHhhhhcccccccccccHHHHHHHHHHhHHHH-
Q 002325 706 ETRLLSSLVEEKENLVSEAVATLLEEKDLSKSLSQELSHLRDETSRQQILISKSSKEFNDLKGNLTDALEQIEQYKLEV- 784 (936)
Q Consensus 706 ~i~~l~sLv~EKE~lv~~a~~~l~~~~~~~elv~qel~~Lr~~~~~q~~lise~~~e~~~~~~~l~~aleqi~~~K~el- 784 (936)
.+..++.=+.++|.-+....++--.....++-+.+.+..+|-....-+..|-+........+.++..--.+|..++.++
T Consensus 310 k~~~~r~k~teiea~i~~~~~e~~~~d~Ei~~~r~~~~~~~re~~~~~~~~~~~~n~i~~~k~~~d~l~k~I~~~~~~~~ 389 (1074)
T KOG0250|consen 310 KIEEARQKLTEIEAKIGELKDEVDAQDEEIEEARKDLDDLRREVNDLKEEIREIENSIRKLKKEVDRLEKQIADLEKQTN 389 (1074)
T ss_pred HHHHHhhhhhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444443345555555555555444555556666666666665656666555555555555555555555555554444
Q ss_pred HHHHHHHHHHHHHhhhhHHH---HHHHHHHHHHHHHhHHHHHHH
Q 002325 785 HDLKQKLELAMKELRDTNEE---TRKQVQLLVIFIQGLSKTVAD 825 (936)
Q Consensus 785 ~~L~~~L~~~s~~LkE~~~e---~~kQLesilvsi~~lsk~f~d 825 (936)
..++..+...-+.++....+ ++.|+.++-.-...+-....+
T Consensus 390 ~~~~~~~~e~e~k~~~L~~evek~e~~~~~L~~e~~~~~~~~~~ 433 (1074)
T KOG0250|consen 390 NELGSELEERENKLEQLKKEVEKLEEQINSLREELNEVKEKAKE 433 (1074)
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444443333333 334444444444444443333
No 45
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=37.06 E-value=1.5e+02 Score=33.97 Aligned_cols=70 Identities=19% Similarity=0.251 Sum_probs=52.8
Q ss_pred ccccCchhhhhHHHhhhhhhhhhhhhhHHHhhhhhhhhchh-----HHHHHhhhhhHHHHHHHHHhhhhhhhhhh
Q 002325 450 EGLCNFKDRLESLLLENRQLRSLLTDKKNEVKRLSLKVSDT-----AEIMLQRSLTEENLVKRIGNLQGALDDAH 519 (936)
Q Consensus 450 ~~~~~l~dR~~sl~~EN~qLrdlladk~kevk~LS~qvSdA-----~~k~sq~~~~Ee~L~~qI~kL~~d~ED~~ 519 (936)
.-++.-++|...|..|...||.-+.+-..|+|-|.-++.+. ......+.-.-++|+.|+++++..++-+.
T Consensus 72 ~lL~~sre~Nk~L~~Ev~~Lrqkl~E~qGD~KlLR~~la~~r~~~~~~~~~~~~~ere~lV~qLEk~~~q~~qLe 146 (319)
T PF09789_consen 72 QLLSESREQNKKLKEEVEELRQKLNEAQGDIKLLREKLARQRVGDEGIGARHFPHEREDLVEQLEKLREQIEQLE 146 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHhhhhhhccccccccchHHHHHHHHHHHHHHHHHHHH
Confidence 55677889999999999999999999999998887766552 22233344456789999999888776554
No 46
>smart00035 CLa CLUSTERIN alpha chain.
Probab=35.76 E-value=1.2e+02 Score=33.14 Aligned_cols=59 Identities=10% Similarity=0.056 Sum_probs=50.0
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHhHHHhhhhhhhhHHhhHHHHHHHHHHhhhhh
Q 002325 805 TRKQVQLLVIFIQGLSKTVADFECRAVADIERCNFRLDSLSSQSKRLILKANVITRTGL 863 (936)
Q Consensus 805 ~~kQLesilvsi~~lsk~f~dfE~~v~~kle~n~~Rle~L~~Q~~~Lv~qa~~Lkkk~l 863 (936)
++.+|+-+|..-..|-+-|.++=....+++.-+..=|+.|..|++++.+.||.-.....
T Consensus 96 Lr~El~eAL~LaE~ftqqYd~lL~~~q~~m~nTs~Lle~ln~QFgWVS~LAN~t~~~~~ 154 (216)
T smart00035 96 LRQELDESLQLAERFTQQYDQLLQSYQKKMLNTSSLLEQLNEQFGWVSQLANLTQGEDQ 154 (216)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhHHHHHHhcCCCCCC
Confidence 55666677777888999999999999999999999999999999999999997666443
No 47
>PHA03332 membrane glycoprotein; Provisional
Probab=34.56 E-value=3.9e+02 Score=35.34 Aligned_cols=44 Identities=23% Similarity=0.212 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHhHHHhhhhhhhhHHhhHH
Q 002325 807 KQVQLLVIFIQGLSKTVADFECRAVADIERCNFRLDSLSSQSKR 850 (936)
Q Consensus 807 kQLesilvsi~~lsk~f~dfE~~v~~kle~n~~Rle~L~~Q~~~ 850 (936)
+.+..+...+.++....+.+-.++.++|...+.|...|.+|.|.
T Consensus 905 aAV~~lsDai~klGnti~kisatl~~nI~avNgRIs~Led~VN~ 948 (1328)
T PHA03332 905 ARVDKTSDVITKLGDTIAKISATLDNNIRAVNGRVSDLEDQVNL 948 (1328)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHhhHHHhcccHHHHHHHHHH
Confidence 44445555677777777777788888788777777777666543
No 48
>PF06810 Phage_GP20: Phage minor structural protein GP20; InterPro: IPR009636 This family consists of several phage minor structural protein Gp20 sequences and prophage sequences of around 180 residues in length. The function of this family is unknown.; GO: 0005198 structural molecule activity
Probab=33.24 E-value=2.4e+02 Score=28.95 Aligned_cols=89 Identities=21% Similarity=0.264 Sum_probs=65.3
Q ss_pred ccCchhhhhHHHhhhhhhhhhhhhhHHHhhhhhhhhchhHHHHHhhhhhHHHHHHHHHhhhhhhhhhhhHHHHHhHHHHh
Q 002325 452 LCNFKDRLESLLLENRQLRSLLTDKKNEVKRLSLKVSDTAEIMLQRSLTEENLVKRIGNLQGALDDAHIEASITEGVYKC 531 (936)
Q Consensus 452 ~~~l~dR~~sl~~EN~qLrdlladk~kevk~LS~qvSdA~~k~sq~~~~Ee~L~~qI~kL~~d~ED~~IE~~IrE~VYkc 531 (936)
+...+.|.+.+..+...++.-|+++.+.++.|..+.-|. ++|..+|..|+.+++...
T Consensus 15 i~~~K~~~~~~~~e~~~~k~ql~~~d~~i~~Lk~~~~d~-----------eeLk~~i~~lq~~~~~~~------------ 71 (155)
T PF06810_consen 15 IEAPKAKVDKVKEERDNLKTQLKEADKQIKDLKKSAKDN-----------EELKKQIEELQAKNKTAK------------ 71 (155)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCH-----------HHHHHHHHHHHHHHHHHH------------
Confidence 334678888888888888888999988888877755544 567888888888776432
Q ss_pred hhhhhhhhhhhccccchhHHHHHHHHHHHHHhhhhhccCchhhhhHH
Q 002325 532 LLGEAADFIKSVSKKSDLEYELMQEVYEIIFSDAAHNATPLAEENLV 578 (936)
Q Consensus 532 ~lre~~~~~~~~~e~~~le~~~~~eiy~ii~~eA~~~~~~~~~~~l~ 578 (936)
.+.+..+-+-.+..-+..|+..+++...-++.
T Consensus 72 ---------------~~~e~~l~~~~~~~ai~~al~~akakn~~av~ 103 (155)
T PF06810_consen 72 ---------------EEYEAKLAQMKKDSAIKSALKGAKAKNPKAVK 103 (155)
T ss_pred ---------------HHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHH
Confidence 13344566667777888899999988765553
No 49
>PRK02224 chromosome segregation protein; Provisional
Probab=33.14 E-value=1.1e+03 Score=29.67 Aligned_cols=23 Identities=26% Similarity=0.411 Sum_probs=13.4
Q ss_pred HHHHHHHhhhHHHHHhhHHHHHH
Q 002325 376 EMTKMKRIHELKVTEMTEDLFAL 398 (936)
Q Consensus 376 em~KMkR~HEs~lqeKTEElF~l 398 (936)
+++.+-..--+..++.-.++|-+
T Consensus 139 e~~~~l~~~p~~R~~ii~~l~~l 161 (880)
T PRK02224 139 EVNKLINATPSDRQDMIDDLLQL 161 (880)
T ss_pred ChHHHHcCCHHHHHHHHHHHhCC
Confidence 45555555555566666666655
No 50
>KOG2760 consensus Vacuolar sorting protein VPS36 [Intracellular trafficking, secretion, and vesicular transport]
Probab=32.11 E-value=23 Score=41.33 Aligned_cols=49 Identities=27% Similarity=0.404 Sum_probs=41.1
Q ss_pred CcccccccccccccccchhhhhHHhhHHHHHHHHHHHhhhhhhhhccccch
Q 002325 176 SEMVGLGGILQDKVSDIRWMDVDKALDSLRTTLDTIFNCADNTVYLSKASL 226 (936)
Q Consensus 176 s~~~gl~gil~~~~~~~~~~~vd~~~d~Lk~~ld~vf~~~~~m~~L~~~s~ 226 (936)
-.++|++|| |+..+-+|..-|+.|+.-=+=|+.++-.|++|+.|+|..-
T Consensus 195 ~r~vGI~gi--Er~~e~q~~~td~~i~~AFqDLskLMs~Akemv~Lsk~~~ 243 (432)
T KOG2760|consen 195 LRMVGISGI--ERSLEEQLKKTDKTINNAFQDLSKLMSLAKEMVSLSKSIA 243 (432)
T ss_pred eeeechhHH--HHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 358999999 4455558999999999988999999999999999988643
No 51
>PF08580 KAR9: Yeast cortical protein KAR9; InterPro: IPR013889 The KAR9 protein in Saccharomyces cerevisiae (Baker's yeast) is a cytoskeletal protein required for karyogamy, correct positioning of the mitotic spindle and for orientation of cytoplasmic microtubules []. KAR9 localises at the shmoo tip in mating cells and at the tip of the growing bud in anaphase [].
Probab=31.97 E-value=6.7e+02 Score=31.56 Aligned_cols=219 Identities=19% Similarity=0.205 Sum_probs=112.5
Q ss_pred HHHHHHHhhhHHHHHhhHHHHHHHHHHHhhcCCCCCCcc--cc-ccHHHhhhHHHHHHhHHHHHhhcCCCCccccccccc
Q 002325 376 EMTKMKRIHELKVTEMTEDLFALKREYLKERGSSLPIKK--DK-EFDILRKKIPEVLSKLDDILVENEKLPAFSENAEGL 452 (936)
Q Consensus 376 em~KMkR~HEs~lqeKTEElF~lKrE~lkerGsSl~lrk--dk-Efe~lRKKIpeVIsKLD~Ii~~n~klp~f~~~~~~~ 452 (936)
||..|-.+|=-.|+.--|+|.++=-|+=.+|-+| |+|. |. +||.+=+++| ++. +.-..--++|+|+.-.+.
T Consensus 123 E~~EL~~~vlg~l~~EIe~~~~~vfemeE~R~~S-p~~~~lp~~~Le~Ive~~~---~~~-~~~~~~~~lPtF~~~Des- 196 (683)
T PF08580_consen 123 EWEELWNDVLGDLDNEIEECIRLVFEMEEKRHSS-PVRHGLPIFELETIVEEMP---SST-NSSNKRFSLPTFSPQDES- 196 (683)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccC-CcccCCCcccHHHHHHhcc---ccC-CCCcCCcCCCCCCcHHHH-
Confidence 5666666777778888888888877774445554 7655 33 5655555555 111 011112457888765533
Q ss_pred cCchhhhhHHHhhhhhhh---hhhhhhHHHhhhhhhhhchhHHHHHhhhhhHHHHHHHHHhhhhhhhhhhhHHHHHhHHH
Q 002325 453 CNFKDRLESLLLENRQLR---SLLTDKKNEVKRLSLKVSDTAEIMLQRSLTEENLVKRIGNLQGALDDAHIEASITEGVY 529 (936)
Q Consensus 453 ~~l~dR~~sl~~EN~qLr---dlladk~kevk~LS~qvSdA~~k~sq~~~~Ee~L~~qI~kL~~d~ED~~IE~~IrE~VY 529 (936)
+-+++..|..-.+=|| |.|--|..+.+......-..+..-.+. .=+.|.++-.+|+.+++.++-|- -|+=+
T Consensus 197 --l~~~ll~L~arm~PLraSLdfLP~Ri~~F~~ra~~~fp~a~e~L~~--r~~~L~~k~~~L~~e~~~LK~EL--iedRW 270 (683)
T PF08580_consen 197 --LYSSLLALFARMQPLRASLDFLPMRIEEFQSRAESIFPSACEELED--RYERLEKKWKKLEKEAESLKKEL--IEDRW 270 (683)
T ss_pred --HHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHh--hhhhH
Confidence 2333333443344444 566666666665443332222222221 22456777777777777776552 34444
Q ss_pred HhhhhhhhhhhhhccccchhHHHHHHHHHHHHHhhhhhc-cCchhhhhHHHhhcccc-------ccccchhhhhhhhhhh
Q 002325 530 KCLLGEAADFIKSVSKKSDLEYELMQEVYEIIFSDAAHN-ATPLAEENLVKRIGNLQ-------GALDDANIEASISEGV 601 (936)
Q Consensus 530 kc~lre~~~~~~~~~e~~~le~~~~~eiy~ii~~eA~~~-~~~~~~~~l~k~~g~~~-------~aleds~ie~~I~e~v 601 (936)
-.+||-+..|+-...++ +|+.+ .-+.+|+.. +.-+....|.|.+|++. .|+--+-.++||..||
T Consensus 271 ~~vFr~l~~q~~~m~es--ver~~------~kl~~~~~~~~~~~~~~~l~~~i~s~~~k~~~~~~~I~ka~~~sIi~~gv 342 (683)
T PF08580_consen 271 NIVFRNLGRQAQKMCES--VERSL------SKLQEAIDSGIHLDNPSKLSKQIESKEKKKSHYFPAIYKARVLSIIDKGV 342 (683)
T ss_pred HHHHHHHHHHHHHHHHH--HHHHH------HHhhccccccccccchHHHHHHHHHHHHHHhccHHHHHHHHHHHhhhhhH
Confidence 45555555555444442 22221 013333221 22333455666666543 2344556677777776
Q ss_pred HHHHHHHHHhhhh
Q 002325 602 YKCLLREAVDSIK 614 (936)
Q Consensus 602 ~~iil~E~v~e~k 614 (936)
-..+=.++...|.
T Consensus 343 ~~r~n~~L~~rW~ 355 (683)
T PF08580_consen 343 ADRLNADLAQRWL 355 (683)
T ss_pred HHHhhHHHHHHHH
Confidence 5554334444443
No 52
>KOG3758 consensus Uncharacterized conserved protein [Function unknown]
Probab=31.30 E-value=7.4e+02 Score=31.14 Aligned_cols=79 Identities=19% Similarity=0.260 Sum_probs=50.6
Q ss_pred HHhhHHHHHHHHHHhhhhhHHHHHHHHhhhHHHHhHHHHhhccchHHHHHH---HHHHHHHHhhcccch---------hh
Q 002325 845 SSQSKRLILKANVITRTGLSYKQKLERRCSDLQKAEAEVDLLGDEVDTLSG---LLEKIYIALDHYSSV---------LQ 912 (936)
Q Consensus 845 ~~Q~~~Lv~qa~~Lkkk~l~YKq~le~RcsnLqKAEaEVDLLGDeVd~LLs---LLeKIYiALDHYSPV---------LQ 912 (936)
+-.-..|+++...++.+ ++.++.||..+.-=..-.-|-+||.+.|.+ +-+--|.+|||---| .+
T Consensus 105 k~~t~dli~~t~~l~~e----~~~le~r~kii~~Fl~~fqLs~~E~~~L~~~g~i~e~FF~vL~rvqeIh~~~~~Ll~~~ 180 (655)
T KOG3758|consen 105 KATTQDLIQKTETLKEE----AAQLELRKKIINAFLDNFQLSSEELDLLTESGPIDEDFFKVLDRVQEIHDNCRLLLQTP 180 (655)
T ss_pred cchHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHhcccChHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 33334455555555444 356788888888888888888999888887 677777777764321 23
Q ss_pred cCccHHHHHHHHHHH
Q 002325 913 HYPGIMEILRLVRRE 927 (936)
Q Consensus 913 hYpGI~Eil~likke 927 (936)
||.-=.||++..-+.
T Consensus 181 ~~~Ag~eime~M~~~ 195 (655)
T KOG3758|consen 181 NQTAGLEIMEKMALI 195 (655)
T ss_pred chhhHHHHHHHHHHH
Confidence 455555666555443
No 53
>PRK11637 AmiB activator; Provisional
Probab=31.29 E-value=8.8e+02 Score=28.10 Aligned_cols=35 Identities=9% Similarity=0.136 Sum_probs=15.9
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHhhhhHHHHHHH
Q 002325 774 LEQIEQYKLEVHDLKQKLELAMKELRDTNEETRKQ 808 (936)
Q Consensus 774 leqi~~~K~el~~L~~~L~~~s~~LkE~~~e~~kQ 808 (936)
-+++...+.++..+...+......+....+.+.++
T Consensus 95 ~~~i~~~~~ei~~l~~eI~~~q~~l~~~~~~l~~r 129 (428)
T PRK11637 95 QNTLNQLNKQIDELNASIAKLEQQQAAQERLLAAQ 129 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444445555544444444444444444444
No 54
>PRK10869 recombination and repair protein; Provisional
Probab=30.98 E-value=1e+03 Score=28.86 Aligned_cols=14 Identities=14% Similarity=0.318 Sum_probs=6.0
Q ss_pred HHHHHhHHHHHHHH
Q 002325 691 ELRRLEVAEKEKLK 704 (936)
Q Consensus 691 e~l~l~~~e~eKlk 704 (936)
+.+++...+-++.+
T Consensus 188 d~l~fql~Ei~~~~ 201 (553)
T PRK10869 188 QLLQYQLKELNEFA 201 (553)
T ss_pred HHHHHHHHHHHhCC
Confidence 44444444433333
No 55
>PRK03918 chromosome segregation protein; Provisional
Probab=28.51 E-value=1.2e+03 Score=28.97 Aligned_cols=197 Identities=17% Similarity=0.167 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHhhhhhhhhhHHHHhhhhhhhHhHhHhhhhcccccccccccHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 002325 718 ENLVSEAVATLLEEKDLSKSLSQELSHLRDETSRQQILISKSSKEFNDLKGNLTDALEQIEQYKLEVHDLKQKLELAMKE 797 (936)
Q Consensus 718 E~lv~~a~~~l~~~~~~~elv~qel~~Lr~~~~~q~~lise~~~e~~~~~~~l~~aleqi~~~K~el~~L~~~L~~~s~~ 797 (936)
+++...+......-...++.+...+..+.++...-.. ....+.+...++..++.++..+.+.+......
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~i~~~l~~-----------l~~~~~~l~~ei~~l~~e~~~l~~~~~~~~~~ 229 (880)
T PRK03918 161 ENAYKNLGEVIKEIKRRIERLEKFIKRTENIEELIKE-----------KEKELEEVLREINEISSELPELREELEKLEKE 229 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred hhhhHHH------HHHHHHHHHHHHHhHHHHHHHHHHHHHHhHHHhhhhhhhhHHhhHHHHHHHHHHhhhhh---HHHHH
Q 002325 798 LRDTNEE------TRKQVQLLVIFIQGLSKTVADFECRAVADIERCNFRLDSLSSQSKRLILKANVITRTGL---SYKQK 868 (936)
Q Consensus 798 LkE~~~e------~~kQLesilvsi~~lsk~f~dfE~~v~~kle~n~~Rle~L~~Q~~~Lv~qa~~Lkkk~l---~YKq~ 868 (936)
+...++. .+.+++.+-.-+..+.......+..+.+- +..-.++..+..++..+-.....+.+-.- -|.+.
T Consensus 230 l~~l~~~~~~~~~l~~~~~~l~~~~~~l~~~i~~l~~el~~l-~~~l~~l~~~~~~~~~l~~~~~~~~~l~~~~~~l~~~ 308 (880)
T PRK03918 230 VKELEELKEEIEELEKELESLEGSKRKLEEKIRELEERIEEL-KKEIEELEEKVKELKELKEKAEEYIKLSEFYEEYLDE 308 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHhhhHHHHhHHHHhhccchHHHHHHHHHHHHHHhhcccchhhcCccHHHHHHHHHH
Q 002325 869 LERRCSDLQKAEAEVDLLGDEVDTLSGLLEKIYIALDHYSSVLQHYPGIMEILRLVRR 926 (936)
Q Consensus 869 le~RcsnLqKAEaEVDLLGDeVd~LLsLLeKIYiALDHYSPVLQhYpGI~Eil~likk 926 (936)
+..=...++..+.++.-+-.+...+-..++++--....+....+.+|.+...+.....
T Consensus 309 ~~~l~~~~~~l~~~~~~l~~~l~~~e~~~~~~~e~~~~~~~~~~~~~~l~~~~~~l~~ 366 (880)
T PRK03918 309 LREIEKRLSRLEEEINGIEERIKELEEKEERLEELKKKLKELEKRLEELEERHELYEE 366 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 56
>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]
Probab=28.04 E-value=1.6e+03 Score=30.13 Aligned_cols=354 Identities=16% Similarity=0.166 Sum_probs=0.0
Q ss_pred ccccHHHhhhHHHHHHhHHHHHhhcCCCCccccccccccCchhhhhHHHhhhhhhhhhhhhhHHHhhhhhhhhchhHHHH
Q 002325 415 DKEFDILRKKIPEVLSKLDDILVENEKLPAFSENAEGLCNFKDRLESLLLENRQLRSLLTDKKNEVKRLSLKVSDTAEIM 494 (936)
Q Consensus 415 dkEfe~lRKKIpeVIsKLD~Ii~~n~klp~f~~~~~~~~~l~dR~~sl~~EN~qLrdlladk~kevk~LS~qvSdA~~k~ 494 (936)
|++++.|+.+=..+...|++|-.+..++.......+. +..|+-.+-.+-.+++..|.++..+++..-+ -..+
T Consensus 651 ek~~~~L~~~k~rl~eel~ei~~~~~e~~~v~~~i~~---le~~~~~~~~~~~~~k~~l~~~~~El~~~~~-----~i~~ 722 (1141)
T KOG0018|consen 651 EKEVDQLKEKKERLLEELKEIQKRRKEVSSVESKIHG---LEMRLKYSKLDLEQLKRSLEQNELELQRTES-----EIDE 722 (1141)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHh
Q ss_pred HhhhhhHHHHHHHHHhhhhhhhhhhh-HHHHHhHHHHhhhhhhhhhhhhccccchhHHHHHHHHHHHHHhhhhhccCchh
Q 002325 495 LQRSLTEENLVKRIGNLQGALDDAHI-EASITEGVYKCLLGEAADFIKSVSKKSDLEYELMQEVYEIIFSDAAHNATPLA 573 (936)
Q Consensus 495 sq~~~~Ee~L~~qI~kL~~d~ED~~I-E~~IrE~VYkc~lre~~~~~~~~~e~~~le~~~~~eiy~ii~~eA~~~~~~~~ 573 (936)
-+.-++ ++.+.|++.++.+.++.. -.-|-+-||+.|++.+---|+..-+..- +|+.-.--+.=-=+-+....
T Consensus 723 ~~p~i~--~i~r~l~~~e~~~~~L~~~~n~ved~if~~f~~~igv~ir~Yee~~~-----~~~~a~k~~ef~~q~~~l~~ 795 (1141)
T KOG0018|consen 723 FGPEIS--EIKRKLQNREGEMKELEERMNKVEDRIFKGFCRRIGVRIREYEEREL-----QQEFAKKRLEFENQKAKLEN 795 (1141)
T ss_pred hCchHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCeeeehHHHHHH-----HHHHHHHHHHHHHHHHHHhh
Q ss_pred hhhHHHhhccccccccchhhhhhhhhhhHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHhhhhccccCCCCCCcccccc
Q 002325 574 EENLVKRIGNLQGALDDANIEASISEGVYKCLLREAVDSIKSVSEKSDLEYELMQEVYGIIFSDAAHNATPGSTCAFEDC 653 (936)
Q Consensus 574 ~~~l~k~~g~~~~aleds~ie~~I~e~v~~iil~E~v~e~k~~~e~~~le~~~~~~~y~~i~~~~a~~~~~~s~~~~e~~ 653 (936)
.+.+.|..- ++..+| -....+...+.-++.+.-.
T Consensus 796 ~l~fe~~~d------~~~~ve----------~~~~~v~~~~~~~~~~~~~------------------------------ 829 (1141)
T KOG0018|consen 796 QLDFEKQKD------TQRRVE----------RWERSVEDLEKEIEGLKKD------------------------------ 829 (1141)
T ss_pred hhhheeccc------HHHHHH----------HHHHHHHHHHHhHHhhHHH------------------------------
Q ss_pred chhHHHhHhHHHHHHHHHHHHHHHHHHHhhHh---hhhH-HHHHHHhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Q 002325 654 DMESVIMQDLYEVIFREALKEAEVKLNELNQK---YFME-TELRRLEVAEKEKLKQETRLLSSLVEEKENLVSEAVATLL 729 (936)
Q Consensus 654 ~mEs~i~ed~c~Vi~ke~vkEae~~L~~~~~k---~~lE-ee~l~l~~~e~eKlk~~i~~l~sLv~EKE~lv~~a~~~l~ 729 (936)
++-+.-++.+. .+.+.+=++.+.+ ...+ .++.+=.+.+..||...+..+.+.++-++.=.+.+-...+
T Consensus 830 -------e~~~~k~i~e~-~~~e~k~k~~~~~~~~e~~e~~k~~~~~~~~~tkl~~~i~~~es~ie~~~~er~~lL~~ck 901 (1141)
T KOG0018|consen 830 -------EEAAEKIIAEI-EELEKKNKSKFEKKEDEINEVKKILRRLVKELTKLDKEITSIESKIERKESERHNLLSKCK 901 (1141)
T ss_pred -------HHHHHHHHhhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHhh
Q ss_pred hhhhhhhhhHHHHhhhhhhhHhHhHhhhhcccccccccccHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhHHH---HH
Q 002325 730 EEKDLSKSLSQELSHLRDETSRQQILISKSSKEFNDLKGNLTDALEQIEQYKLEVHDLKQKLELAMKELRDTNEE---TR 806 (936)
Q Consensus 730 ~~~~~~elv~qel~~Lr~~~~~q~~lise~~~e~~~~~~~l~~aleqi~~~K~el~~L~~~L~~~s~~LkE~~~e---~~ 806 (936)
-++-.+-+.+--+++.=- --.-.|+.+|+... .+.+|.+..+.|..+.-.+|..+.= .-
T Consensus 902 l~~I~vPl~~gs~~d~~~----------~ieidy~~L~~~y~--------L~~kl~e~~~~l~~~~Pn~kA~~~~d~v~~ 963 (1141)
T KOG0018|consen 902 LEDIEVPLSSGSMDDIVI----------GIEIDYSGLPREYK--------LQQKLEEKQSVLNRIAPNLKALERLDEVRF 963 (1141)
T ss_pred hccccccccCCCccccce----------ecccccccccHHHH--------HHHHHHHHHHHHHHhCcchHHHhhhhhHHH
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHhHHHhhhhhhhhHHhhHHHHHHHHHHhhhhhHHHH
Q 002325 807 KQVQLLVIFIQGLSKTVADFECRAVADIERCNFRLDSLSSQSKRLILKANVITRTGLSYKQ 867 (936)
Q Consensus 807 kQLesilvsi~~lsk~f~dfE~~v~~kle~n~~Rle~L~~Q~~~Lv~qa~~Lkkk~l~YKq 867 (936)
.++.-=+..-.+-.|-..+-..+|-++ |++--...|+|+... ..-.||+
T Consensus 964 ~~~~~EfE~ark~ak~ak~~F~~VK~~------R~~~F~~~F~~va~~------Id~IYK~ 1012 (1141)
T KOG0018|consen 964 QEINEEFEAARKEAKKAKNAFNKVKKK------RYERFMACFEHVADN------IDRIYKE 1012 (1141)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHH------HHHHHHH
No 57
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=27.76 E-value=1.2e+03 Score=28.41 Aligned_cols=109 Identities=22% Similarity=0.159 Sum_probs=65.4
Q ss_pred ccccHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhHHH---HHHHHHHHHHHHHhHHHHHHHHHHHHHHhHHHhhhhhh
Q 002325 766 LKGNLTDALEQIEQYKLEVHDLKQKLELAMKELRDTNEE---TRKQVQLLVIFIQGLSKTVADFECRAVADIERCNFRLD 842 (936)
Q Consensus 766 ~~~~l~~aleqi~~~K~el~~L~~~L~~~s~~LkE~~~e---~~kQLesilvsi~~lsk~f~dfE~~v~~kle~n~~Rle 842 (936)
+||--..-+........++..|...|...+-++..++.+ ....++..-.-..++...-.-.|..+.. ..|+.
T Consensus 439 lpgip~~y~~~~~~~~~~i~~l~~~L~~g~VNm~ai~~e~~e~~~~~~~L~~q~~dL~~~a~~lE~~Iqy-----~nRfr 513 (569)
T PRK04778 439 LPGLPEDYLEMFFEVSDEIEALAEELEEKPINMEAVNRLLEEATEDVETLEEETEELVENATLTEQLIQY-----ANRYR 513 (569)
T ss_pred CCCCcHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HhccC
Confidence 455555555566666677777777777655555555533 1222233333334444444444444442 45666
Q ss_pred hhHHhhHHHHHHHHHHhhhhhHHHHHHHHhhhHHHHhH
Q 002325 843 SLSSQSKRLILKANVITRTGLSYKQKLERRCSDLQKAE 880 (936)
Q Consensus 843 ~L~~Q~~~Lv~qa~~Lkkk~l~YKq~le~RcsnLqKAE 880 (936)
.-....+.-.++|-.|= +...|+++|++=..-|.++|
T Consensus 514 ~~~~~V~~~f~~Ae~lF-~~~~Y~~al~~~~~alE~ve 550 (569)
T PRK04778 514 SDNEEVAEALNEAERLF-REYDYKAALEIIATALEKVE 550 (569)
T ss_pred CCCHHHHHHHHHHHHHH-HhCChHHHHHHHHHHHHhhC
Confidence 66666666677777777 89999999988666666655
No 58
>PLN03229 acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Provisional
Probab=27.55 E-value=1.4e+03 Score=29.39 Aligned_cols=91 Identities=30% Similarity=0.349 Sum_probs=53.5
Q ss_pred hcCCCCHHHHHHHHHHHHHHHHHhhhH-----------------H--HHHhhHHHHHHHHHHHhhcCCC-CCCccccccH
Q 002325 360 NLKHMSKEELVNHFKAEMTKMKRIHEL-----------------K--VTEMTEDLFALKREYLKERGSS-LPIKKDKEFD 419 (936)
Q Consensus 360 ~LkhM~keeli~yfk~em~KMkR~HEs-----------------~--lqeKTEElF~lKrE~lkerGsS-l~lrkdkEfe 419 (936)
.|..|+.++++.....=..+|=+-.|. + .-+-.+|+=.||.|+||-+-|+ -|.--
T Consensus 384 ~l~~~~~~~l~~~R~~kfr~~G~~~e~~~~~~~~~~~~~~~~~~~~~~~~Le~elekLk~eilKAk~s~~~~~~~----- 458 (762)
T PLN03229 384 ELGKMDTEELLKHRMLKFRKIGGFQEGVPVDPERKVNMKKREAVKTPVRELEGEVEKLKEQILKAKESSSKPSEL----- 458 (762)
T ss_pred HHHCCCHHHHHHHHHHHHHHhCCcccCCCCChhhhcccchhccCCCCCccHHHHHHHHHHHHHhcccccCCCCCh-----
Confidence 477788888887655444443222222 2 3456788999999999887554 22111
Q ss_pred HHhhhHHHHHHhHHHHHhhcCCCCccccccccccCchhhhhHHHhh
Q 002325 420 ILRKKIPEVLSKLDDILVENEKLPAFSENAEGLCNFKDRLESLLLE 465 (936)
Q Consensus 420 ~lRKKIpeVIsKLD~Ii~~n~klp~f~~~~~~~~~l~dR~~sl~~E 465 (936)
.|..+|..+-.-+|.=+++-- ...+|++|++.|..|
T Consensus 459 ~L~e~IeKLk~E~d~e~S~A~----------~~~gLk~kL~~Lr~E 494 (762)
T PLN03229 459 ALNEMIEKLKKEIDLEYTEAV----------IAMGLQERLENLREE 494 (762)
T ss_pred HHHHHHHHHHHHHHHHHHHhh----------hhhhHHHHHHHHHHH
Confidence 244455444444454444432 334689999988843
No 59
>PHA02562 46 endonuclease subunit; Provisional
Probab=26.48 E-value=1.1e+03 Score=27.69 Aligned_cols=29 Identities=7% Similarity=0.123 Sum_probs=17.2
Q ss_pred hhhhhhhhHHhhHHHHHHHHHHhhhhhHH
Q 002325 837 CNFRLDSLSSQSKRLILKANVITRTGLSY 865 (936)
Q Consensus 837 n~~Rle~L~~Q~~~Lv~qa~~Lkkk~l~Y 865 (936)
.+.+|..+..++..+......+.+....+
T Consensus 377 ~~~~l~~l~~~l~~~~~~~~~~~ke~~~~ 405 (562)
T PHA02562 377 NAEELAKLQDELDKIVKTKSELVKEKYHR 405 (562)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556666666666666666665554443
No 60
>KOG3691 consensus Exocyst complex subunit Sec8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=25.16 E-value=4.8e+02 Score=33.92 Aligned_cols=152 Identities=22% Similarity=0.266 Sum_probs=96.8
Q ss_pred cccccccccccHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhHHH--HHHHHHHHHHHHHhHHHHHHHHHHHHHHh---
Q 002325 759 SSKEFNDLKGNLTDALEQIEQYKLEVHDLKQKLELAMKELRDTNEE--TRKQVQLLVIFIQGLSKTVADFECRAVAD--- 833 (936)
Q Consensus 759 ~~~e~~~~~~~l~~aleqi~~~K~el~~L~~~L~~~s~~LkE~~~e--~~kQLesilvsi~~lsk~f~dfE~~v~~k--- 833 (936)
.-..|..+.+.+-++.++++..|.-|..-+..|...+.+|+++-.+ +-|-+=.+++-|.++-+.+..||.-++.+
T Consensus 80 ~i~sy~~i~s~It~~rerI~~vK~~L~~~k~ll~~~rdeLqklw~~~~q~K~Vi~vL~eieEl~qvPqkie~~i~keqY~ 159 (982)
T KOG3691|consen 80 GISSYGEISSGITNCRERIHNVKNNLEACKELLNTRRDELQKLWAENSQYKKVIEVLKEIEELRQVPQKIETLIAKEQYL 159 (982)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 3344555667777778888888888888888888888888888777 55556677888888888888888776542
Q ss_pred ----------------------HHHhhhhhhhhHHhhHH-HHHH-------------HHHHhhhh---------------
Q 002325 834 ----------------------IERCNFRLDSLSSQSKR-LILK-------------ANVITRTG--------------- 862 (936)
Q Consensus 834 ----------------------le~n~~Rle~L~~Q~~~-Lv~q-------------a~~Lkkk~--------------- 862 (936)
++.-..+++...+++-. |++. ....++++
T Consensus 160 ~Asdll~~~~~~lng~L~~VEgLs~l~~ele~~~~~L~~~L~eELv~ily~ks~~~~l~~~~~~~~~~s~l~~~~~~~in 239 (982)
T KOG3691|consen 160 QASDLLTRAWELLNGPLDGVEGLSDLRSELEGLLSHLEDILIEELVSILYLKSVAYPLVSYCRTNPLSSRLNDFLYNNIN 239 (982)
T ss_pred HHHHHHHHHHHHhcCcchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhchhhhhHHhhhcCCchhhHHHHHhhcccC
Confidence 11122233333333211 1111 01112222
Q ss_pred ----hHHHHHHHHhhh----------HHHHhHHHHhhccchHHHHHHHHHHH---HHHhhcccch
Q 002325 863 ----LSYKQKLERRCS----------DLQKAEAEVDLLGDEVDTLSGLLEKI---YIALDHYSSV 910 (936)
Q Consensus 863 ----l~YKq~le~Rcs----------nLqKAEaEVDLLGDeVd~LLsLLeKI---YiALDHYSPV 910 (936)
..=+|.++++|. +++.|.+.-||+|+-+++.-+|-..| +++-||-+|+
T Consensus 240 ~t~l~~sr~~~ea~~~k~~~g~~sv~~~~~~~~~~~l~~~~pe~~sslf~~il~k~~~~~~k~p~ 304 (982)
T KOG3691|consen 240 TTTLGTSRQLLEALCHKSDAGSGSVRDIRIVLEKEDLLLSLPEANSSLFRRILEKFTTVDSKSPA 304 (982)
T ss_pred ccccCccHHHHHHHHHHhhcCCcchhhHHHHHhhccccccchhhHHHHHHHHHHHHhhhhhhhHH
Confidence 122566777764 68899999999999888877776653 4566666665
No 61
>cd08915 V_Alix_like Protein-interacting V-domain of mammalian Alix and related domains. This superfamily contains the V-shaped (V) domain of mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, and related domains. Alix, HD-PTP, Bro1, and Rim20 all interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. Alix, also known as apoptosis-linked gene-2 interacting protein 1 (AIP1), participates in membrane remodeling processes during the budding of enveloped viruses, vesicle budding inside late endosomal multivesicular bodies (MVBs), and the abscission reactions of mammalian cell division. It also functions in apoptosis. HD-PTP functions in cell migration and endosomal trafficking, Bro1 in endosomal trafficking, and Rim20 in the response to the external pH via the Rim101 pathway. The Alix V-domain contains
Probab=24.42 E-value=1e+03 Score=26.64 Aligned_cols=46 Identities=28% Similarity=0.310 Sum_probs=28.3
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHhhhhh
Q 002325 702 KLKQETRLLSSLVEEKENLVSEAVATLLEEKDLSKSLSQELSHLRD 747 (936)
Q Consensus 702 Klk~~i~~l~sLv~EKE~lv~~a~~~l~~~~~~~elv~qel~~Lr~ 747 (936)
.+...+.-+..+...-++.+..+...|..+...-+......+..||
T Consensus 74 ~l~~~~~~l~~l~~~~~~~l~~~~~~L~~E~~ed~~~R~k~g~~~w 119 (342)
T cd08915 74 NIEQSFKELSKLRQNVEELLQECEELLEEEAAEDDQLRAKFGTLRW 119 (342)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCcccC
Confidence 3344444455555566666777777776666666666666666665
No 62
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=23.88 E-value=2.8e+02 Score=31.65 Aligned_cols=60 Identities=23% Similarity=0.453 Sum_probs=0.0
Q ss_pred ccccHHHHHHHHHHhHHHHHHHHHHHHHHHHH--------------hhhhHHHHHHHHHHHHHHH--------HhHHHHH
Q 002325 766 LKGNLTDALEQIEQYKLEVHDLKQKLELAMKE--------------LRDTNEETRKQVQLLVIFI--------QGLSKTV 823 (936)
Q Consensus 766 ~~~~l~~aleqi~~~K~el~~L~~~L~~~s~~--------------LkE~~~e~~kQLesilvsi--------~~lsk~f 823 (936)
++-+|.+.-..++....||.+|+..|.-+.++ |||+.++ =|||.-++..| .++.|-|
T Consensus 73 LkakLkes~~~l~dRetEI~eLksQL~RMrEDWIEEECHRVEAQLALKEARkE-IkQLkQvieTmrssL~ekDkGiQKYF 151 (305)
T PF15290_consen 73 LKAKLKESENRLHDRETEIDELKSQLARMREDWIEEECHRVEAQLALKEARKE-IKQLKQVIETMRSSLAEKDKGIQKYF 151 (305)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhhhchhhhhHHHHH
Q ss_pred HHH
Q 002325 824 ADF 826 (936)
Q Consensus 824 ~df 826 (936)
.|+
T Consensus 152 vDI 154 (305)
T PF15290_consen 152 VDI 154 (305)
T ss_pred hhh
No 63
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=23.67 E-value=1.9e+03 Score=29.34 Aligned_cols=206 Identities=16% Similarity=0.248 Sum_probs=96.7
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHhhhhhhhHhHhHhhhhcccccccccccHHHHHHHHHHh-HHHHHH
Q 002325 708 RLLSSLVEEKENLVSEAVATLLEEKDLSKSLSQELSHLRDETSRQQILISKSSKEFNDLKGNLTDALEQIEQY-KLEVHD 786 (936)
Q Consensus 708 ~~l~sLv~EKE~lv~~a~~~l~~~~~~~elv~qel~~Lr~~~~~q~~lise~~~e~~~~~~~l~~aleqi~~~-K~el~~ 786 (936)
..|+.+...+..+-..--..+...-+.......++..++..-.....-..+-...|+.....+..++.....- ..++..
T Consensus 327 ~~L~~i~~~~~~ye~~~i~~~~~~~~~l~~~~~~~~~l~~~~~~Lt~~~~di~~ky~~~~~~l~~~~~~~~~~~~~~~~~ 406 (1201)
T PF12128_consen 327 SELDEIEQQKKDYEDADIEQLIARVDQLPEWRNELENLQEQLDLLTSKHQDIESKYNKLKQKLEEAFNRQQERLQAQQDE 406 (1201)
T ss_pred HHHHHHHHHHHHHHHCCHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444455555433333344444555556666666665555544445555556666666655555432221 222333
Q ss_pred HHHHHHHHHH----HhhhhHHHHHHH----HHHHHHHHHhHHHHHHHHHHH---------HHHhHHHhhhhhhhhHHhhH
Q 002325 787 LKQKLELAMK----ELRDTNEETRKQ----VQLLVIFIQGLSKTVADFECR---------AVADIERCNFRLDSLSSQSK 849 (936)
Q Consensus 787 L~~~L~~~s~----~LkE~~~e~~kQ----Lesilvsi~~lsk~f~dfE~~---------v~~kle~n~~Rle~L~~Q~~ 849 (936)
+++....... .+.....+++.| +..+-.-...+.......+.. ..+.++....|++....+..
T Consensus 407 ~~e~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~e~~~~~~~~~~~~~~a~~~~~ 486 (1201)
T PF12128_consen 407 IREEKAERREQIEEEYQALEQELRQQSQEQLEELQEQREQLKSELAELKQQLKNPQYTEEEKEQLEQADKRLEQAQEQQN 486 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 3222222111 111111122211 111111122222222222222 22234557778888877777
Q ss_pred HHHHHHHHHhhhhhHHHHHHHHhhhHHHHhHHHHhhccchHHHHHHHHHHHHHHhhcccchhhc-----CccHHHH
Q 002325 850 RLILKANVITRTGLSYKQKLERRCSDLQKAEAEVDLLGDEVDTLSGLLEKIYIALDHYSSVLQH-----YPGIMEI 920 (936)
Q Consensus 850 ~Lv~qa~~Lkkk~l~YKq~le~RcsnLqKAEaEVDLLGDeVd~LLsLLeKIYiALDHYSPVLQh-----YpGI~Ei 920 (936)
..-+++..++...---++..+ +|+.++.-+.-++..+-.-+.++.--|++..-.|.| .||=-+.
T Consensus 487 ~~~~~~~~~~~~~~~~~~~~~-------~a~~~l~~~~~~~~~~~~~~~~l~~~L~p~~gSL~~fL~~~~p~We~t 555 (1201)
T PF12128_consen 487 QAQQAVEELQAEEQELRKERD-------QAEEELRQARRELEELRAQIAELQRQLDPQKGSLLEFLRKNKPGWEQT 555 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCcHHHHHHhCCCcHHHH
Confidence 777777666655333333333 444444444445555666666666677776666654 5665444
No 64
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=23.61 E-value=2.3e+03 Score=30.40 Aligned_cols=55 Identities=18% Similarity=0.078 Sum_probs=29.6
Q ss_pred hhhHHhhHHHHHHHHHHhhhhhHHHHHHHHhhhHHHHhHHHHhhccchHHHHHHH
Q 002325 842 DSLSSQSKRLILKANVITRTGLSYKQKLERRCSDLQKAEAEVDLLGDEVDTLSGL 896 (936)
Q Consensus 842 e~L~~Q~~~Lv~qa~~Lkkk~l~YKq~le~RcsnLqKAEaEVDLLGDeVd~LLsL 896 (936)
..+..+.....+....+.+.-..-+.-+..+|.+++.-++.++-|-++|..|+-=
T Consensus 443 ~~l~~el~~~~q~~~~~e~~~~~l~~~~~~~~renk~l~~~~sdlsrqv~~Ll~e 497 (1822)
T KOG4674|consen 443 AELSEELDFSNQKIQKLEKELESLKKQLNDLERENKLLEQQISDLSRQVNVLLLE 497 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444445555556666666666666666666655543
No 65
>PF11101 DUF2884: Protein of unknown function (DUF2884); InterPro: IPR021307 Some members in this bacterial family of proteins are annotated as YggN which currently has no known function.
Probab=23.12 E-value=4.6e+02 Score=28.34 Aligned_cols=95 Identities=16% Similarity=0.327 Sum_probs=53.8
Q ss_pred hhHHhhHHHHHHHHHHHhhhhhhhhccccchhh--hhHhHHHHhhHHHHH---HHHHH----------------------
Q 002325 196 DVDKALDSLRTTLDTIFNCADNTVYLSKASLCQ--WQQEKEFQGEIEDMV---IMNCF---------------------- 248 (936)
Q Consensus 196 ~vd~~~d~Lk~~ld~vf~~~~~m~~L~~~s~~~--~Q~E~e~q~Ei~~iv---I~~~i---------------------- 248 (936)
.+...++.|+.-++.+|.+-.+.+++.-.+++. -.|..||+.+++.+| +|+.+
T Consensus 96 ~l~~l~~~l~~~~~~~~~~~~d~~~l~~~~~~~~~~~~~~e~e~~~e~lv~~s~g~i~~~l~~~m~~~~G~~~l~~~~~~ 175 (229)
T PF11101_consen 96 RLKQLMDQLKQQVDRRFYQRGDGFVLHAQAFSQLDEFFDQEFEQAIEQLVQESMGSILQALGNEMGSSEGDQNLQAFEQR 175 (229)
T ss_pred HHHHHHHHHHHHHHHHheeCCCcEEEcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCchHHHHHHH
Confidence 345555666666666666666655566555554 456777888877665 33333
Q ss_pred -hhhHHHHHHHHhhhhhhhccchhhhhHhHHHHHHHHHHHHHHH
Q 002325 249 -RSLKEEFEERLCDQSAQFYDNESLNWLGKIKEISSLREELNAI 291 (936)
Q Consensus 249 -r~LqeEfE~kL~~Q~~~~~~~~s~nw~e~v~eissLR~eL~aI 291 (936)
-+|++.+|.++=.|...| ......+=+.+..+..+|++|...
T Consensus 176 m~~l~~~ie~~~~~q~~~l-e~~a~~lC~~l~~L~~~E~~L~~~ 218 (229)
T PF11101_consen 176 MEGLQQQIEQEMEAQAQEL-EQKAQALCDSLQQLDQQEQQLQQR 218 (229)
T ss_pred HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345555555444444322 333344446667777777777543
No 66
>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells. Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex
Probab=22.75 E-value=1e+03 Score=25.86 Aligned_cols=75 Identities=21% Similarity=0.225 Sum_probs=37.5
Q ss_pred HHHHHHHHHHHHHHHHhhHhhhhH-HHHHHHhHHHHHHHHHHHHH-HhhHHHHHHHHHHHHHHHHHhhhhhhhhhHH
Q 002325 666 VIFREALKEAEVKLNELNQKYFME-TELRRLEVAEKEKLKQETRL-LSSLVEEKENLVSEAVATLLEEKDLSKSLSQ 740 (936)
Q Consensus 666 Vi~ke~vkEae~~L~~~~~k~~lE-ee~l~l~~~e~eKlk~~i~~-l~sLv~EKE~lv~~a~~~l~~~~~~~elv~q 740 (936)
.-+..++.||+..|.++-...|.. ...-..+..++++|-..+.. +.....+-+.+...+...|.++..++.=+..
T Consensus 123 ~~l~~~l~ea~~mL~emr~r~f~~~~~~Ae~El~~A~~LL~~v~~~~~~~~~~~~~l~~~i~~~L~~~~~kL~Dl~~ 199 (264)
T PF06008_consen 123 EDLQRALAEAQRMLEEMRKRDFTPQRQNAEDELKEAEDLLSRVQKWFQKPQQENESLAEAIRDDLNDYNAKLQDLRD 199 (264)
T ss_pred HHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 457788888888886553332222 11112222333443333333 2444456666666666666655554443333
No 67
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=22.70 E-value=8.8e+02 Score=27.72 Aligned_cols=95 Identities=22% Similarity=0.274 Sum_probs=52.3
Q ss_pred HHHHHHHHHHHH-HhhHhhhhHHHHHHHhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHhhhhh
Q 002325 669 REALKEAEVKLN-ELNQKYFMETELRRLEVAEKEKLKQETRLLSSLVEEKENLVSEAVATLLEEKDLSKSLSQELSHLRD 747 (936)
Q Consensus 669 ke~vkEae~~L~-~~~~k~~lEee~l~l~~~e~eKlk~~i~~l~sLv~EKE~lv~~a~~~l~~~~~~~elv~qel~~Lr~ 747 (936)
+..++|.+.+.+ .+....-|.-|--.|..++ +-||-.+.-+...+-+..+=...-..++..+|...+.+..++..||+
T Consensus 83 k~~l~evEekyrkAMv~naQLDNek~~l~yqv-d~Lkd~lee~eE~~~~~~re~~eK~~elEr~K~~~d~L~~e~~~Lre 161 (302)
T PF09738_consen 83 KDSLAEVEEKYRKAMVSNAQLDNEKSALMYQV-DLLKDKLEELEETLAQLQREYREKIRELERQKRAHDSLREELDELRE 161 (302)
T ss_pred HHHHHHHHHHHHHHHHHHhhhchHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777777777775 5555544442222222211 12222222222222111111123334466778888999999999999
Q ss_pred hhHhHhHhhhhcccccc
Q 002325 748 ETSRQQILISKSSKEFN 764 (936)
Q Consensus 748 ~~~~q~~lise~~~e~~ 764 (936)
...+.+.+|.+..-.+.
T Consensus 162 ~L~~rdeli~khGlVlv 178 (302)
T PF09738_consen 162 QLKQRDELIEKHGLVLV 178 (302)
T ss_pred HHHHHHHHHHHCCeeeC
Confidence 99999999877655544
No 68
>PF14931 IFT20: Intraflagellar transport complex B, subunit 20
Probab=22.03 E-value=8e+02 Score=24.51 Aligned_cols=62 Identities=29% Similarity=0.298 Sum_probs=49.9
Q ss_pred hHHHHHHHHH--HHHHHhhHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHhhhhhhhHhHhHhhh
Q 002325 696 EVAEKEKLKQ--ETRLLSSLVEEKENLVSEAVATLLEEKDLSKSLSQELSHLRDETSRQQILIS 757 (936)
Q Consensus 696 ~~~e~eKlk~--~i~~l~sLv~EKE~lv~~a~~~l~~~~~~~elv~qel~~Lr~~~~~q~~lis 757 (936)
..++.+|++- .--.+.+..+.++.-.+..+..+.+.+..+|-..-|...|+-.+.+|..+|.
T Consensus 55 ~~VE~eKlkAIG~RN~l~s~~k~R~~~~q~lq~~I~Ek~~eLERl~~E~~sL~kve~eQ~~~i~ 118 (120)
T PF14931_consen 55 KRVENEKLKAIGARNLLKSEAKQREAQQQQLQALIAEKKMELERLRSEYESLQKVEQEQNELIQ 118 (120)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456777774 4445566667888888889999999999999999999999999999998875
No 69
>PRK10361 DNA recombination protein RmuC; Provisional
Probab=21.89 E-value=1.5e+03 Score=27.62 Aligned_cols=23 Identities=9% Similarity=0.211 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHH
Q 002325 807 KQVQLLVIFIQGLSKTVADFECRAVA 832 (936)
Q Consensus 807 kQLesilvsi~~lsk~f~dfE~~v~~ 832 (936)
..|..++.++. ..+..|+.+|.+
T Consensus 136 ~~l~~ll~Pl~---e~l~~f~~~v~~ 158 (475)
T PRK10361 136 QSLNSLLSPLR---EQLDGFRRQVQD 158 (475)
T ss_pred HHHHHHHhhHH---HHHHHHHHHHHH
Confidence 33666665543 344455555553
No 70
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=21.83 E-value=7.2e+02 Score=31.37 Aligned_cols=110 Identities=22% Similarity=0.211 Sum_probs=52.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHhh--------hhHHHHHHHhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhhhhh
Q 002325 663 LYEVIFREALKEAEVKLNELNQKY--------FMETELRRLEVAEKEKLKQETRLLSSLVEEKENLVSEAVATLLEEKDL 734 (936)
Q Consensus 663 ~c~Vi~ke~vkEae~~L~~~~~k~--------~lEee~l~l~~~e~eKlk~~i~~l~sLv~EKE~lv~~a~~~l~~~~~~ 734 (936)
.|.-..+...+++|.+++.+-... .+|.|+..|...+++-.+..-.++.+|.-..++-.+-...=-.+.+-+
T Consensus 538 e~~e~~r~r~~~lE~E~~~lr~elk~kee~~~~~e~~~~~lr~~~~e~~~~~e~L~~aL~amqdk~~~LE~sLsaEtriK 617 (697)
T PF09726_consen 538 ECAESCRQRRRQLESELKKLRRELKQKEEQIRELESELQELRKYEKESEKDTEVLMSALSAMQDKNQHLENSLSAETRIK 617 (697)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Confidence 455567888888888886333332 222222222221111112233344444433333222222222344445
Q ss_pred hhhhHHHHhhhhhhhHhHhHhhhhcccccccccccHHHHHHHHHHhHHHHHHHHHHHHHH
Q 002325 735 SKSLSQELSHLRDETSRQQILISKSSKEFNDLKGNLTDALEQIEQYKLEVHDLKQKLELA 794 (936)
Q Consensus 735 ~elv~qel~~Lr~~~~~q~~lise~~~e~~~~~~~l~~aleqi~~~K~el~~L~~~L~~~ 794 (936)
.||.+- |+.-|.+. +-+-.++..-..||.+|+..|...
T Consensus 618 ldLfsa-Lg~akrq~---------------------ei~~~~~~~~d~ei~~lk~ki~~~ 655 (697)
T PF09726_consen 618 LDLFSA-LGDAKRQL---------------------EIAQGQLRKKDKEIEELKAKIAQL 655 (697)
T ss_pred HHHHHH-HHHHHHHH---------------------HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666555 55555443 334445555667888888766543
No 71
>PF04899 MbeD_MobD: MbeD/MobD like ; InterPro: IPR006983 The MbeD and MobD proteins are plasmid encoded, and are involved in the plasmid mobilisation and transfer in the presence of conjugative plasmids [].
Probab=20.80 E-value=6.3e+02 Score=23.26 Aligned_cols=38 Identities=16% Similarity=0.142 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHHhHHHhhhhhhhhHHhhHHHHHHHHHHhh
Q 002325 819 LSKTVADFECRAVADIERCNFRLDSLSSQSKRLILKANVITR 860 (936)
Q Consensus 819 lsk~f~dfE~~v~~kle~n~~Rle~L~~Q~~~Lv~qa~~Lkk 860 (936)
....|.++....+ .+..+-..|+.|++.|++|++.|-.
T Consensus 26 Wq~sy~~Lq~~~~----~t~~~~a~L~~qv~~Ls~qv~~Ls~ 63 (70)
T PF04899_consen 26 WQSSYADLQHMFE----QTSQENAALSEQVNNLSQQVQRLSE 63 (70)
T ss_pred HHHHHHHHHHHHH----HhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555554443 3445555777777777777776643
No 72
>smart00762 Cog4 COG4 transport protein. This region is found in yeast oligomeric golgi complex component 4 which is involved in ER to Golgi and intra Golgi transport.
Probab=20.09 E-value=1.9e+02 Score=32.56 Aligned_cols=38 Identities=24% Similarity=0.370 Sum_probs=29.8
Q ss_pred chHHHHHHHHHHHHHHhhcccchhhcCccHHHHHHHHH
Q 002325 888 DEVDTLSGLLEKIYIALDHYSSVLQHYPGIMEILRLVR 925 (936)
Q Consensus 888 DeVd~LLsLLeKIYiALDHYSPVLQhYpGI~Eil~lik 925 (936)
.=+++|+.|++-|=.++++|+|+...|-|---++.+|.
T Consensus 79 ~~a~~lt~Lfe~ia~ii~~h~~~I~~~yG~~~~~~vi~ 116 (324)
T smart00762 79 FYADTLTHLFENVATIIEQHQPVIEKYYGPDGMLYVIT 116 (324)
T ss_pred hHHHHHHHHHHHHHHHHHhccHHHHHHcCchhHHHHHH
Confidence 45789999999999999999999988866444444433
No 73
>KOG1655 consensus Protein involved in vacuolar protein sorting [Intracellular trafficking, secretion, and vesicular transport]
Probab=20.03 E-value=9.2e+02 Score=26.55 Aligned_cols=71 Identities=25% Similarity=0.382 Sum_probs=45.0
Q ss_pred hhhhhhhhHHhhHHHHHHHHHHhhh-hhHHHHHHHHhhhHHHHhHHHHhhccchHHHHH---HHHHHHHHHhhcccchh
Q 002325 837 CNFRLDSLSSQSKRLILKANVITRT-GLSYKQKLERRCSDLQKAEAEVDLLGDEVDTLS---GLLEKIYIALDHYSSVL 911 (936)
Q Consensus 837 n~~Rle~L~~Q~~~Lv~qa~~Lkkk-~l~YKq~le~RcsnLqKAEaEVDLLGDeVd~LL---sLLeKIYiALDHYSPVL 911 (936)
|.-.+++|.+++-.|+.+++.+--. |..|- .-+ =+..--+||.|-||+|-|.+= +-|.--|.+=+.-+|+.
T Consensus 124 nId~IedlQDem~Dlmd~a~EiQE~Lgr~y~-~pe---ide~dL~aELdaL~~E~d~~~~~~~~~~psyl~p~~~~~~~ 198 (218)
T KOG1655|consen 124 NIDKIEDLQDEMEDLMDQADEIQEVLGRNYN-TPD---IDEADLDAELDALGQELDMLEEDENYLMPSYLAPANEPPAF 198 (218)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHhhccC-CCC---cCHHHHHHHHHHHHhHhhcccccccccchhhhCCCCCCCCC
Confidence 6778999999999999999887432 11121 111 345556788999999988754 23344454444444443
Done!