Query 002325
Match_columns 936
No_of_seqs 49 out of 51
Neff 3.4
Searched_HMMs 13730
Date Mon Mar 25 21:47:50 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002325.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/002325hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1zs3a1 a.25.1.1 (A:3-173) Dod 25.8 1.7E+02 0.012 26.7 9.9 105 138-261 55-159 (171)
2 d1bh9b_ a.22.1.3 (B:) TAF(II)2 14.0 51 0.0037 28.0 2.9 27 595-621 39-65 (89)
3 d1ugoa_ a.7.7.1 (A:) BAG-famil 9.7 1.3E+02 0.0094 25.6 4.2 46 387-436 19-64 (99)
4 d1ls1a1 a.24.13.1 (A:1-88) Sig 8.5 3.4E+02 0.025 22.1 6.4 83 200-292 1-86 (88)
5 d1o3xa_ a.7.8.1 (A:) ADP-ribos 8.2 1.3E+02 0.0092 25.8 3.5 49 868-916 19-77 (112)
6 d1o22a_ d.238.1.1 (A:) Hypothe 8.0 54 0.0039 29.3 1.0 21 410-430 5-25 (149)
7 d1ji4a_ a.25.1.1 (A:) Dodecame 7.4 4.8E+02 0.035 21.7 7.2 102 139-261 37-138 (144)
8 d1fxka_ a.2.5.1 (A:) Prefoldin 7.2 5.6E+02 0.04 20.8 9.7 34 827-860 67-100 (107)
9 d1i5na_ a.24.10.3 (A:) Chemota 6.6 2.3E+02 0.017 23.4 4.5 28 138-165 2-29 (128)
10 d1zuja1 a.25.1.1 (A:6-173) Dod 6.4 3.5E+02 0.025 24.2 5.9 103 140-261 54-156 (168)
No 1
>d1zs3a1 a.25.1.1 (A:3-173) Dodecameric ferritin homolog {Lactococcus lactis, DpsB [TaxId: 1358]}
Probab=25.78 E-value=1.7e+02 Score=26.72 Aligned_cols=105 Identities=8% Similarity=0.037 Sum_probs=72.7
Q ss_pred cccccccchHHHHHHHHhhhhhhccccccccccccCCCCcccccccccccccccchhhhhHHhhHHHHHHHHHHHhhhhh
Q 002325 138 IGESVGGLKNVAKEQLKNLRKEIDRIKGCSSLRRIGSGSEMVGLGGILQDKVSDIRWMDVDKALDSLRTTLDTIFNCADN 217 (936)
Q Consensus 138 ~~e~l~~lk~~~~~ql~~L~~~i~~~~~~~~~~~~~sgs~~~gl~gil~~~~~~~~~~~vd~~~d~Lk~~ld~vf~~~~~ 217 (936)
+-++++.+-..+.++++.+-+.|..+-|..+.. -++..-+.+|.+++... +....+.++..|..-.+++-..++.
T Consensus 55 lH~~fee~y~~~~~~~D~iAEri~~lG~~p~~t----~~e~~e~s~i~e~~~~~-~~~s~~eml~~Lv~d~~~~~~~~~~ 129 (171)
T d1zs3a1 55 KCEYLREIAQREVEYFFKISDLLLDENEIVPST----TEEFLKYHKFITEDPKA-KYWTDEDLLESFIVDFQAQNMFITR 129 (171)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCS----HHHHHHHCCSCCCCGGG-GGSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCcc----HHHHHHHccCccCCCCC-CCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 566777888888999999999888877665432 11222334444444444 6778888888888877777777666
Q ss_pred hhhccccchhhhhHhHHHHhhHHHHHHHHHHhhhHHHHHHHHhh
Q 002325 218 TVYLSKASLCQWQQEKEFQGEIEDMVIMNCFRSLKEEFEERLCD 261 (936)
Q Consensus 218 m~~L~~~s~~~~Q~E~e~q~Ei~~ivI~~~ir~LqeEfE~kL~~ 261 (936)
.+-+. .+-..-.+.+.+.++..+.|...|=
T Consensus 130 ~i~~A--------------~~e~D~~tadll~d~~~~~eK~iWm 159 (171)
T d1zs3a1 130 AIKLA--------------NKEEKFALAAGVVELYGYNLQVIRN 159 (171)
T ss_dssp HHHHH--------------HHTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHH--------------HHCCCHHHHHHHHHHHHHHHHHHHH
Confidence 64332 2334567888999999999998887
No 2
>d1bh9b_ a.22.1.3 (B:) TAF(II)28 {Human (Homo sapiens) [TaxId: 9606]}
Probab=13.97 E-value=51 Score=27.99 Aligned_cols=27 Identities=26% Similarity=0.308 Sum_probs=23.6
Q ss_pred hhhhhhhHHHHHHHHHhhhhhhhhhch
Q 002325 595 ASISEGVYKCLLREAVDSIKSVSEKSD 621 (936)
Q Consensus 595 ~~I~e~v~~iil~E~v~e~k~~~e~~~ 621 (936)
.|.+-|+.++|+.|+|..|..+.++++
T Consensus 39 ~i~v~giaKvFvGEiVE~A~~V~~~~~ 65 (89)
T d1bh9b_ 39 VIAMSGISKVFVGEVVEEALDVCEKWG 65 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 457899999999999999999887665
No 3
>d1ugoa_ a.7.7.1 (A:) BAG-family molecular chaperone regulator-5, BAG-5 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=9.73 E-value=1.3e+02 Score=25.55 Aligned_cols=46 Identities=17% Similarity=0.393 Sum_probs=35.1
Q ss_pred HHHHhhHHHHHHHHHHHhhcCCCCCCccccccHHHhhhHHHHHHhHHHHH
Q 002325 387 KVTEMTEDLFALKREYLKERGSSLPIKKDKEFDILRKKIPEVLSKLDDIL 436 (936)
Q Consensus 387 ~lqeKTEElF~lKrE~lkerGsSl~lrkdkEfe~lRKKIpeVIsKLD~Ii 436 (936)
+|++-++++-.|+.+...-.| .+.|+|+-.|-.-+...+.|||.|=
T Consensus 19 ~I~~i~~ev~~L~~~V~~f~~----~~~dke~~~L~E~L~~~LlkLD~Ie 64 (99)
T d1ugoa_ 19 RLQEIQREVKAIEPQVVGFSG----LSDDKNYKRLERILTKQLFEIDSVD 64 (99)
T ss_dssp HHHHHHHHHHHSHHHHHTCCC----CTTSSHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHHHHHHhC----ccchHHHHHHHHHHHHHHHHhcCcc
Confidence 456666666677777755434 3578999999999999999999984
No 4
>d1ls1a1 a.24.13.1 (A:1-88) Signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]}
Probab=8.52 E-value=3.4e+02 Score=22.14 Aligned_cols=83 Identities=12% Similarity=0.123 Sum_probs=51.3
Q ss_pred hhHHHHHHHHHHHhhhhhhhhccccchhhhhHhH---HHHhhHHHHHHHHHHhhhHHHHHHHHhhhhhhhccchhhhhHh
Q 002325 200 ALDSLRTTLDTIFNCADNTVYLSKASLCQWQQEK---EFQGEIEDMVIMNCFRSLKEEFEERLCDQSAQFYDNESLNWLG 276 (936)
Q Consensus 200 ~~d~Lk~~ld~vf~~~~~m~~L~~~s~~~~Q~E~---e~q~Ei~~ivI~~~ir~LqeEfE~kL~~Q~~~~~~~~s~nw~e 276 (936)
||++|..-+..+|+.+..--.+++..+.+.-+|- -++.+|.=-|+..++...++.. -.+.- ....+ =..
T Consensus 1 MF~~L~~~l~~a~~~l~g~~~i~E~~i~~~l~eir~ALLeADV~l~vvk~f~~~ik~k~----~g~~v--~~~~~--p~~ 72 (88)
T d1ls1a1 1 MFQQLSARLQEAIGRLRGRGRITEEDLKATLREIRRALMDADVNLEVARDFVERVREEA----LGKQV--LESLT--PAE 72 (88)
T ss_dssp CCHHHHHHHHHHHHTTTTSCSCCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHH----HHTTT--TTCSC--HHH
T ss_pred ChHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHH----hHHHh--hcCCC--HHH
Confidence 5899999999999999888778877776665432 3555666666666666665553 32211 11111 011
Q ss_pred HHHHHHHHHHHHHHHH
Q 002325 277 KIKEISSLREELNAIS 292 (936)
Q Consensus 277 ~v~eissLR~eL~aI~ 292 (936)
.+ +..+++||..+.
T Consensus 73 ~i--ikiV~dELv~lL 86 (88)
T d1ls1a1 73 VI--LATVYEALKEAL 86 (88)
T ss_dssp HH--HHHHHHHHHHHT
T ss_pred HH--HHHHHHHHHHHh
Confidence 22 457788887664
No 5
>d1o3xa_ a.7.8.1 (A:) ADP-ribosylation factor binding protein Gga1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=8.16 E-value=1.3e+02 Score=25.79 Aligned_cols=49 Identities=18% Similarity=0.375 Sum_probs=35.6
Q ss_pred HHHHhhhHHHHhHHHHhhccchHHH----------HHHHHHHHHHHhhcccchhhcCcc
Q 002325 868 KLERRCSDLQKAEAEVDLLGDEVDT----------LSGLLEKIYIALDHYSSVLQHYPG 916 (936)
Q Consensus 868 ~le~RcsnLqKAEaEVDLLGDeVd~----------LLsLLeKIYiALDHYSPVLQhYpG 916 (936)
...+|.++|.++..-|.||++=.++ -..|+.-.|-++..+.|.++++.+
T Consensus 19 ~~~k~~~eLe~v~~n~~lL~eML~~~~~~~~~~~~~~ell~eL~~~c~~~qp~i~~li~ 77 (112)
T d1o3xa_ 19 KISKRVNAIEEVNNNVKLLTEMVMSHSQGGAAAGSSEDLMKELYQRCERMRPTLFRLAS 77 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTTTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4445567777777777777644433 346899999999999999998754
No 6
>d1o22a_ d.238.1.1 (A:) Hypothetical protein TM0875 {Thermotoga maritima [TaxId: 2336]}
Probab=8.03 E-value=54 Score=29.31 Aligned_cols=21 Identities=52% Similarity=0.744 Sum_probs=18.5
Q ss_pred CCCccccccHHHhhhHHHHHH
Q 002325 410 LPIKKDKEFDILRKKIPEVLS 430 (936)
Q Consensus 410 l~lrkdkEfe~lRKKIpeVIs 430 (936)
++.|+||||..|-|||-|+.-
T Consensus 5 ~y~~k~k~~~~le~k~~ei~~ 25 (149)
T d1o22a_ 5 LYYKKGKEFGILEKKMKEIFN 25 (149)
T ss_dssp EEEETTCCCHHHHHHHHHHHH
T ss_pred EEEecCcchhHHHHHHHHHHH
Confidence 578999999999999998764
No 7
>d1ji4a_ a.25.1.1 (A:) Dodecameric ferritin homolog {Helicobacter pylori, Nap [TaxId: 210]}
Probab=7.38 E-value=4.8e+02 Score=21.73 Aligned_cols=102 Identities=5% Similarity=0.036 Sum_probs=65.5
Q ss_pred ccccccchHHHHHHHHhhhhhhccccccccccccCCCCcccccccccccccccchhhhhHHhhHHHHHHHHHHHhhhhhh
Q 002325 139 GESVGGLKNVAKEQLKNLRKEIDRIKGCSSLRRIGSGSEMVGLGGILQDKVSDIRWMDVDKALDSLRTTLDTIFNCADNT 218 (936)
Q Consensus 139 ~e~l~~lk~~~~~ql~~L~~~i~~~~~~~~~~~~~sgs~~~gl~gil~~~~~~~~~~~vd~~~d~Lk~~ld~vf~~~~~m 218 (936)
-+.++.+-..+.++.+.+-+.|..+-|.....-.. ..-+..| .+ .|+ .+.++..++..+-.....+...++++
T Consensus 37 H~~f~e~y~~~~~~~D~iAERi~~LG~~p~~~~~~----~~~~s~i-~~-~~~-~~~~~~~ml~~l~~~~~~~~~~~~~~ 109 (144)
T d1ji4a_ 37 HKATEEIYEEFADMFDDLAERIVQLGHHPLVTLSE----AIKLTRV-KE-ETK-TSFHSKDIFKEILEDYKYLEKEFKEL 109 (144)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTSCCCCSHHH----HHHHCCS-CC-CCC-CCEEHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCCCCcCHHH----HHHhcCC-cc-cCC-CCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566677788899999999998888777544100 0001111 00 223 45677888888888888887777776
Q ss_pred hhccccchhhhhHhHHHHhhHHHHHHHHHHhhhHHHHHHHHhh
Q 002325 219 VYLSKASLCQWQQEKEFQGEIEDMVIMNCFRSLKEEFEERLCD 261 (936)
Q Consensus 219 ~~L~~~s~~~~Q~E~e~q~Ei~~ivI~~~ir~LqeEfE~kL~~ 261 (936)
...+.. .-.-++.+.+.++-++.|..+|=
T Consensus 110 ~~~a~~--------------~~D~~t~~ll~~~~~~~ek~~W~ 138 (144)
T d1ji4a_ 110 SNTAEK--------------EGDKVTVTYADDQLAKLQKSIWM 138 (144)
T ss_dssp HHHHHH--------------TTCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHH--------------CCCHHHHHHHHHHHHHHHHHHHH
Confidence 443322 12346778888888888887775
No 8
>d1fxka_ a.2.5.1 (A:) Prefoldin beta subunit {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}
Probab=7.24 E-value=5.6e+02 Score=20.79 Aligned_cols=34 Identities=15% Similarity=0.213 Sum_probs=19.4
Q ss_pred HHHHHHhHHHhhhhhhhhHHhhHHHHHHHHHHhh
Q 002325 827 ECRAVADIERCNFRLDSLSSQSKRLILKANVITR 860 (936)
Q Consensus 827 E~~v~~kle~n~~Rle~L~~Q~~~Lv~qa~~Lkk 860 (936)
-..+..+++..+.|++.+..|+..+-++...+++
T Consensus 67 ~~~l~~~~e~l~~~i~~l~~q~~~l~~~l~~~~~ 100 (107)
T d1fxka_ 67 TEELQEKLETLQLREKTIERQEERVMKKLQEMQV 100 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334445555666666666666666666555443
No 9
>d1i5na_ a.24.10.3 (A:) Chemotaxis protein CheA P1 domain {Salmonella typhimurium [TaxId: 90371]}
Probab=6.57 E-value=2.3e+02 Score=23.37 Aligned_cols=28 Identities=14% Similarity=0.167 Sum_probs=19.8
Q ss_pred cccccccchHHHHHHHHhhhhhhccccc
Q 002325 138 IGESVGGLKNVAKEQLKNLRKEIDRIKG 165 (936)
Q Consensus 138 ~~e~l~~lk~~~~~ql~~L~~~i~~~~~ 165 (936)
+.+++.-+..++.++|..|...+..++.
T Consensus 2 ~~e~~~~F~~Ea~e~l~~l~~~l~~le~ 29 (128)
T d1i5na_ 2 ISDFYQTFFDEADELLADMEQHLLDLVP 29 (128)
T ss_dssp GGGGHHHHHHHHHHHHHHHHHHHHHCCT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456667777888888888877766653
No 10
>d1zuja1 a.25.1.1 (A:6-173) Dodecameric ferritin homolog {Lactococcus lactis, DpsA [TaxId: 1358]}
Probab=6.42 E-value=3.5e+02 Score=24.21 Aligned_cols=103 Identities=7% Similarity=0.011 Sum_probs=67.7
Q ss_pred cccccchHHHHHHHHhhhhhhccccccccccccCCCCcccccccccccccccchhhhhHHhhHHHHHHHHHHHhhhhhhh
Q 002325 140 ESVGGLKNVAKEQLKNLRKEIDRIKGCSSLRRIGSGSEMVGLGGILQDKVSDIRWMDVDKALDSLRTTLDTIFNCADNTV 219 (936)
Q Consensus 140 e~l~~lk~~~~~ql~~L~~~i~~~~~~~~~~~~~sgs~~~gl~gil~~~~~~~~~~~vd~~~d~Lk~~ld~vf~~~~~m~ 219 (936)
+.++.+-..+.++++.+-+.|..+-|..+.. =.+......|..+..+. +.+..+.++..|-.-.+++-..++..+
T Consensus 54 ~~fee~y~~~~~~~D~iAEri~~lG~~~~~t----~~e~~~~s~i~E~~~~~-~~~s~~~ml~~li~d~~~~~~~~~~~i 128 (168)
T d1zuja1 54 IKFREIALKEDEWFYLISEQLLDENELVPTT----LDEFVSNHKFIENDPKA-KYWTDEALIENFINDFQNQNLFIGRAI 128 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTCCCCCS----HHHHHHHCCSCCCCTTG-GGSCHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCc----HHHHHHHccCccccccc-CCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4577777888899999999888776654432 01122333444333334 677788888888777777766666664
Q ss_pred hccccchhhhhHhHHHHhhHHHHHHHHHHhhhHHHHHHHHhh
Q 002325 220 YLSKASLCQWQQEKEFQGEIEDMVIMNCFRSLKEEFEERLCD 261 (936)
Q Consensus 220 ~L~~~s~~~~Q~E~e~q~Ei~~ivI~~~ir~LqeEfE~kL~~ 261 (936)
-+.. +-..-.+.+.+.++..++|..+|=
T Consensus 129 ~~A~--------------~~~D~~t~~~l~~~l~~~ek~iWm 156 (168)
T d1zuja1 129 KLAQ--------------KEEKFSLELAIRKLYGYNLSIIPY 156 (168)
T ss_dssp HHHH--------------HTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHH--------------HcCCHHHHHHHHHHHHHHHHHHHH
Confidence 4332 222345778889999999998887
Done!