BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 002329
(936 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q80TZ9|RERE_MOUSE Arginine-glutamic acid dipeptide repeats protein OS=Mus musculus
GN=Rere PE=1 SV=3
Length = 1558
Score = 50.4 bits (119), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 21/50 (42%), Positives = 32/50 (64%), Gaps = 1/50 (2%)
Query: 157 PVPGFLRDPWKDSEKDIFLLGLYIFGKNFFQI-KRFIETKEMGDILSFYY 205
PVP + W + E F+ GL +GKNFF+I K + +KE G++++FYY
Sbjct: 387 PVPKLIEKCWTEDEVKRFVKGLRQYGKNFFRIRKELLPSKETGELITFYY 436
>sp|Q62901|RERE_RAT Arginine-glutamic acid dipeptide repeats protein OS=Rattus
norvegicus GN=Rere PE=2 SV=2
Length = 1559
Score = 49.7 bits (117), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 21/50 (42%), Positives = 31/50 (62%), Gaps = 1/50 (2%)
Query: 157 PVPGFLRDPWKDSEKDIFLLGLYIFGKNFFQI-KRFIETKEMGDILSFYY 205
PVP + W + E F+ GL +GKNFF+I K + KE G++++FYY
Sbjct: 386 PVPKLIEKCWTEDEVKRFVKGLRQYGKNFFRIRKELLPNKETGELITFYY 435
>sp|Q9P2R6|RERE_HUMAN Arginine-glutamic acid dipeptide repeats protein OS=Homo sapiens
GN=RERE PE=1 SV=2
Length = 1566
Score = 49.7 bits (117), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 21/50 (42%), Positives = 31/50 (62%), Gaps = 1/50 (2%)
Query: 157 PVPGFLRDPWKDSEKDIFLLGLYIFGKNFFQI-KRFIETKEMGDILSFYY 205
PVP + W + E F+ GL +GKNFF+I K + KE G++++FYY
Sbjct: 387 PVPKLIEKCWTEDEVKRFVKGLRQYGKNFFRIRKELLPNKETGELITFYY 436
>sp|Q6PJG2|EMSA1_HUMAN ELM2 and SANT domain-containing protein 1 OS=Homo sapiens
GN=ELMSAN1 PE=1 SV=2
Length = 1045
Score = 45.8 bits (107), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 28/42 (66%)
Query: 164 DPWKDSEKDIFLLGLYIFGKNFFQIKRFIETKEMGDILSFYY 205
D WK +E+ +F G+ I+ K+FF +++ I+TK + + FYY
Sbjct: 831 DQWKMAERKLFNKGIAIYKKDFFLVQKLIQTKTVAQCVEFYY 872
>sp|Q18919|RCOR_CAEEL REST corepressor spr-1 OS=Caenorhabditis elegans GN=spr-1 PE=1 SV=2
Length = 558
Score = 40.4 bits (93), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 25/44 (56%)
Query: 162 LRDPWKDSEKDIFLLGLYIFGKNFFQIKRFIETKEMGDILSFYY 205
L+D W D E +F IFGKNF QI+ + + + I+ FYY
Sbjct: 194 LKDVWTDQEITLFENCYQIFGKNFSQIRSALCHRSLQSIVQFYY 237
>sp|Q9H0D2|ZN541_HUMAN Zinc finger protein 541 OS=Homo sapiens GN=ZNF541 PE=2 SV=2
Length = 1365
Score = 37.7 bits (86), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 14/42 (33%), Positives = 22/42 (52%)
Query: 164 DPWKDSEKDIFLLGLYIFGKNFFQIKRFIETKEMGDILSFYY 205
D W EK +F Y K+F+ I + I+TK + + +YY
Sbjct: 1182 DVWTPIEKRLFKKAFYAHKKDFYLIHKMIQTKTVAQCVEYYY 1223
>sp|Q4R2Z8|ZN541_MACFA Zinc finger protein 541 (Fragment) OS=Macaca fascicularis GN=ZNF541
PE=2 SV=2
Length = 804
Score = 36.2 bits (82), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 14/42 (33%), Positives = 22/42 (52%)
Query: 164 DPWKDSEKDIFLLGLYIFGKNFFQIKRFIETKEMGDILSFYY 205
D W EK +F Y K+F+ I + I+TK + + +YY
Sbjct: 619 DVWTPIEKRLFKKAFYAHKKDFYLIHKTIQTKTVAQCVEYYY 660
>sp|Q4KKX4|NCOR1_XENTR Nuclear receptor corepressor 1 OS=Xenopus tropicalis GN=ncor1 PE=2
SV=1
Length = 2494
Score = 36.2 bits (82), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 25/58 (43%), Gaps = 12/58 (20%)
Query: 160 GFLRDP------------WKDSEKDIFLLGLYIFGKNFFQIKRFIETKEMGDILSFYY 205
G + DP W D EK+IF KNF I ++E K + D + +YY
Sbjct: 414 GLMEDPMKVYKDRQFMNVWTDHEKEIFKEKFVQHPKNFGLIASYLERKTVSDCVLYYY 471
>sp|Q8QG78|NCOR1_XENLA Nuclear receptor corepressor 1 OS=Xenopus laevis GN=ncor1 PE=1 SV=1
Length = 2498
Score = 36.2 bits (82), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 21/40 (52%)
Query: 166 WKDSEKDIFLLGLYIFGKNFFQIKRFIETKEMGDILSFYY 205
W D EK+IF KNF I ++E K + D + +YY
Sbjct: 432 WTDHEKEIFKEKFVRHPKNFGLIASYLERKNVSDCVLYYY 471
>sp|Q60974|NCOR1_MOUSE Nuclear receptor corepressor 1 OS=Mus musculus GN=Ncor1 PE=1 SV=1
Length = 2453
Score = 35.8 bits (81), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 21/40 (52%)
Query: 166 WKDSEKDIFLLGLYIFGKNFFQIKRFIETKEMGDILSFYY 205
W D EK+IF KNF I ++E K + D + +YY
Sbjct: 440 WTDHEKEIFKDKFIQHPKNFGLIASYLERKSVPDCVLYYY 479
>sp|O75376|NCOR1_HUMAN Nuclear receptor corepressor 1 OS=Homo sapiens GN=NCOR1 PE=1 SV=2
Length = 2440
Score = 35.8 bits (81), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 21/40 (52%)
Query: 166 WKDSEKDIFLLGLYIFGKNFFQIKRFIETKEMGDILSFYY 205
W D EK+IF KNF I ++E K + D + +YY
Sbjct: 440 WTDHEKEIFKDKFIQHPKNFGLIASYLERKSVPDCVLYYY 479
>sp|A8XWW4|SHOC2_CAEBR Leucine-rich repeat protein soc-2 OS=Caenorhabditis briggsae
GN=soc-2 PE=3 SV=1
Length = 559
Score = 34.3 bits (77), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 27/46 (58%)
Query: 693 CIIGYFQPGHESKEVGPCSALDLPDVGYNDISQVGTSLEKISPLSR 738
C++ Y +E+G C AL D+ +ND+S++ S+ K++ L R
Sbjct: 216 CLVSYNHLTRVPEEIGECHALTQLDLQHNDLSELPYSIGKLTNLVR 261
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.313 0.130 0.374
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 345,669,957
Number of Sequences: 539616
Number of extensions: 14827546
Number of successful extensions: 30855
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 41
Number of HSP's that attempted gapping in prelim test: 30722
Number of HSP's gapped (non-prelim): 111
length of query: 936
length of database: 191,569,459
effective HSP length: 127
effective length of query: 809
effective length of database: 123,038,227
effective search space: 99537925643
effective search space used: 99537925643
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 66 (30.0 bits)