BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 002330
(935 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q5ZIX8|KDM3A_CHICK Lysine-specific demethylase 3A OS=Gallus gallus GN=KDM3A PE=2 SV=1
Length = 1325
Score = 216 bits (551), Expect = 6e-55, Method: Compositional matrix adjust.
Identities = 161/476 (33%), Positives = 219/476 (46%), Gaps = 109/476 (22%)
Query: 457 ILDNKLTNLRQNRAETGTDM------LCKAASREGSD-------DNLLYCPDSTKIQEDE 503
ILD+ +L QNR T TDM L + G D DN L C + +
Sbjct: 909 ILDDIFASLVQNR--TVTDMPKKPQGLTIKPTIMGFDTPHYWLCDNRLLCLQDPNNESNW 966
Query: 504 ELFRFQKHWIKGEPVIVRNVLDKVTGLSWEPMVMWRALCENVDSEVSSKMSEVKAIDCLA 563
+FR + W +G+PV+V V K+ W P E+ E + EV ++C
Sbjct: 967 NVFR--ECWKQGQPVMVSGVHHKLNADLWRP--------ESFRKEFGQQ--EVDLVNC-- 1012
Query: 564 SCEVEISTRQFFKGYTQGRTYDNFW------------PEMLKLKDWPPSDKFEDLMPRHC 611
T + G T G +D F P +LKLKDWPP + F D+MP
Sbjct: 1013 ------RTNEIITGATVGDFWDGFEDISSRLRTEEGEPMVLKLKDWPPGEDFRDMMPSRF 1066
Query: 612 DEFISALPFQEYSDPRAGILNLAVKLPSGVLKPDLGPKTYIAYGVAEELGRGDSVTKLHC 671
D+ + +P EY+ R G LNLA +LP+ ++PDLGPK Y AYG+ R T LH
Sbjct: 1067 DDLMKNIPLPEYTR-RGGKLNLASRLPNYFVRPDLGPKMYNAYGLITPEDRKYGTTNLHL 1125
Query: 672 DMSDAVNILTHTEEVLLTEEQHSAVERLKKEHRAQDLKENLVQDGMDESIEEPNSDNNKE 731
D+SDA N++ + + + + + + LK +QDG
Sbjct: 1126 DVSDAANVMVYV-----------GIPKGQADQEEEVLKT--IQDG--------------- 1157
Query: 732 DTDVSEINDSELLPSGIRGEFKMSRDEMQGTAFTCPHSEGTMVESGGALWDIFRRQDVPK 791
D+D I F SR E GALW I+ +D K
Sbjct: 1158 DSDELTIK-----------RFTESR------------------EKPGALWHIYAAKDTEK 1188
Query: 792 LEAYLRKHFKEFRHVYCSPVEQVIHPIHDQCFYLSSEHKKKLKEEFGVEPWTFEQKLGEA 851
+ +L+K +E +PV+ PIHDQ +YL +K+L +E+GV+ W Q LG+
Sbjct: 1189 IREFLKKVAEE--QGQENPVDH--DPIHDQSWYLDRSLRKRLHQEYGVQGWAIVQFLGDV 1244
Query: 852 VFIPAGCPHQVRNLKSCTKVAVDFVSPENVDECLRLTKEFRLLPKNHRAREDKLEV 907
VFIPAG PHQV NL SC KVA DFVSPE+V C LT+EFR L H EDKL+V
Sbjct: 1245 VFIPAGAPHQVHNLYSCIKVAEDFVSPEHVKHCFWLTQEFRYLSHTHTNHEDKLQV 1300
>sp|Q9Y4C1|KDM3A_HUMAN Lysine-specific demethylase 3A OS=Homo sapiens GN=KDM3A PE=1 SV=4
Length = 1321
Score = 212 bits (539), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 160/479 (33%), Positives = 221/479 (46%), Gaps = 108/479 (22%)
Query: 457 ILDNKLTNLRQNRAETGTDM------LCKAASREGSD-------DNLLYCPDSTKIQEDE 503
ILD+ +L QN+ T +D+ L S G D DN L C + +
Sbjct: 906 ILDDIFASLVQNK--TTSDLSKRPQGLTIKPSILGFDTPHYWLCDNRLLCLQDPNNKSNW 963
Query: 504 ELFRFQKHWIKGEPVIVRNVLDKVTGLSWEPMVMWRALCENVDSEVSSKMSEVKAIDCLA 563
+FR + W +G+PV+V V K+ W+P + E EV ++C
Sbjct: 964 NVFR--ECWKQGQPVMVSGVHHKLNSELWKPESFRKEFGEQ----------EVDLVNC-- 1009
Query: 564 SCEVEISTRQFFKGYTQGRTYDNFW-----------PEMLKLKDWPPSDKFEDLMPRHCD 612
T + G T G +D F P +LKLKDWPP + F D+MP D
Sbjct: 1010 ------RTNEIITGATVGDFWDGFEDVPNRLKNEKEPMVLKLKDWPPGEDFRDMMPSRFD 1063
Query: 613 EFISALPFQEYSDPRAGILNLAVKLPSGVLKPDLGPKTYIAYGVAEELGRGDSVTKLHCD 672
+ ++ +P EY+ R G LNLA +LP+ ++PDLGPK Y AYG+ R T LH D
Sbjct: 1064 DLMANIPLPEYTR-RDGKLNLASRLPNYFVRPDLGPKMYNAYGLITPEDRKYGTTNLHLD 1122
Query: 673 MSDAVNILTHTEEVLLTEEQHSAVERLKKEHRAQDLKENLVQDGMDESIEEPNSDNNKED 732
+SDA N++ + + + + E + LK +QDG
Sbjct: 1123 VSDAANVMVYV-----------GIPKGQCEQEEEVLKT--IQDG---------------- 1153
Query: 733 TDVSEINDSELLPSGIRGEFKMSRDEMQGTAFTCPHSEGTMVESGGALWDIFRRQDVPKL 792
DS DE+ F EG E GALW I+ +D K+
Sbjct: 1154 -------DS---------------DELTIKRFI----EGK--EKPGALWHIYAAKDTEKI 1185
Query: 793 EAYLRKHFKEFRHVYCSPVEQVIHPIHDQCFYLSSEHKKKLKEEFGVEPWTFEQKLGEAV 852
+L+K +E +P + PIHDQ +YL +K+L +E+GV+ W Q LG+ V
Sbjct: 1186 REFLKKVSEEQGQE--NPADH--DPIHDQSWYLDRSLRKRLHQEYGVQGWAIVQFLGDVV 1241
Query: 853 FIPAGCPHQVRNLKSCTKVAVDFVSPENVDECLRLTKEFRLLPKNHRAREDKLEVYLVF 911
FIPAG PHQV NL SC KVA DFVSPE+V C LT+EFR L + H EDKL+V V
Sbjct: 1242 FIPAGAPHQVHNLYSCIKVAEDFVSPEHVKHCFWLTQEFRYLSQTHTNHEDKLQVKNVI 1300
Score = 36.6 bits (83), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 15/49 (30%), Positives = 26/49 (53%)
Query: 330 RVYCNHCATSIIDLHRSCPKCSYELCLTCCKEICEGRLSGRAEMKFQYV 378
R C+ C T+I +LH CP+C + +C+ C + + G A F ++
Sbjct: 659 REMCDVCDTTIFNLHWVCPRCGFGVCVDCYRMKRKNCQQGAAYKTFSWL 707
>sp|Q6IRB8|KD3AA_XENLA Lysine-specific demethylase 3A-A OS=Xenopus laevis GN=kdm3a-a PE=2
SV=1
Length = 1331
Score = 202 bits (513), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 143/424 (33%), Positives = 200/424 (47%), Gaps = 78/424 (18%)
Query: 488 DNLLYCPDSTKIQEDEELFRFQKHWIKGEPVIVRNVLDKVTGLSWEPMVMWRALCENVDS 547
DN L C + + +FR + W +G+PVIV + + + W P R +
Sbjct: 957 DNRLLCLQDPNNKSNWNVFR--ECWKQGQPVIVSGIHNNLNSELWRPESFRREFGD---- 1010
Query: 548 EVSSKMSEVKAIDCLASCEVEIST-RQFFKGY--TQGRTYDNFWPEM-LKLKDWPPSDKF 603
E ++C + + +T F++G+ R ++ M LKLKDWPP + F
Sbjct: 1011 ------QEADLVNCRTNDIITGATVGDFWEGFEDISARLKNDKGEAMVLKLKDWPPGEDF 1064
Query: 604 EDLMPRHCDEFISALPFQEYSDPRAGILNLAVKLPSGVLKPDLGPKTYIAYGVAEELGRG 663
D M ++ ++ +P EY+ R G LNLA +LP+ ++PDLGPK Y AYG+ R
Sbjct: 1065 RDTMLSRFEDLMNNIPLPEYTR-REGKLNLAARLPAYFVRPDLGPKMYNAYGLITPEDRK 1123
Query: 664 DSVTKLHCDMSDAVNILTHTEEVLLTEEQHSAVERLKKEHRAQDLKENLVQDGMDESIEE 723
T LH D+SDA N++ + V K EH + +QDG
Sbjct: 1124 YGTTNLHLDVSDATNVMVY-------------VGIPKGEHDQEQEVIRTIQDG------- 1163
Query: 724 PNSDNNKEDTDVSEINDSELLPSGIRGEFKMSRDEMQGTAFTCPHSEGTMVESGGALWDI 783
D E+ + EFK E GALW I
Sbjct: 1164 ----------DADELTIKRYI------EFK---------------------EKPGALWHI 1186
Query: 784 FRRQDVPKLEAYLRKHFKEFRHVYCSPVEQVIHPIHDQCFYLSSEHKKKLKEEFGVEPWT 843
F +D K+ +L+K +E H +P + PIHDQ +YL + +K+L +E GV+ W
Sbjct: 1187 FAAKDTEKIRQFLKKVAEEQGHE--NPPDH--DPIHDQSWYLDNTLRKRLLQEHGVQGWA 1242
Query: 844 FEQKLGEAVFIPAGCPHQVRNLKSCTKVAVDFVSPENVDECLRLTKEFRLLPKNHRARED 903
Q LG+AVFIPAG PHQV NL SC KVA DFVSPE+V C LT+EFR L H ED
Sbjct: 1243 IVQFLGDAVFIPAGAPHQVHNLYSCIKVAEDFVSPEHVKHCFWLTQEFRYLSHTHTNHED 1302
Query: 904 KLEV 907
KL+V
Sbjct: 1303 KLQV 1306
Score = 38.1 bits (87), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 20/31 (64%)
Query: 330 RVYCNHCATSIIDLHRSCPKCSYELCLTCCK 360
R C+ C T+I +LH CPKC + +C+ C +
Sbjct: 680 REMCDACDTTIFNLHWVCPKCGFGVCVDCYR 710
>sp|Q5HZN1|KD3AB_XENLA Lysine-specific demethylase 3A-B OS=Xenopus laevis GN=kdm3a-b PE=2
SV=1
Length = 1334
Score = 200 bits (509), Expect = 4e-50, Method: Compositional matrix adjust.
Identities = 143/424 (33%), Positives = 199/424 (46%), Gaps = 78/424 (18%)
Query: 488 DNLLYCPDSTKIQEDEELFRFQKHWIKGEPVIVRNVLDKVTGLSWEPMVMWRALCENVDS 547
DN L C + + +FR + W +G+PV+V V + + W P R +
Sbjct: 960 DNRLLCLQDPNNKSNWNVFR--ECWKQGQPVMVSGVHNNLNSELWRPESFRREFGDQ--- 1014
Query: 548 EVSSKMSEVKAIDCLASCEVEIST-RQFFKGY--TQGRTYDNFWPEM-LKLKDWPPSDKF 603
E ++C + + +T F+ G+ GR ++ M LKLKDWPP + F
Sbjct: 1015 -------EADLVNCRTNDIITGATVGDFWDGFEDIPGRLKNDTGESMVLKLKDWPPGEDF 1067
Query: 604 EDLMPRHCDEFISALPFQEYSDPRAGILNLAVKLPSGVLKPDLGPKTYIAYGVAEELGRG 663
D M ++ ++ +P EY+ R G LNLA +LP+ ++PDLGPK Y AYG+ R
Sbjct: 1068 RDTMLSRFEDLMNNIPLPEYTR-REGKLNLAARLPTYFVRPDLGPKMYNAYGLITPEDRK 1126
Query: 664 DSVTKLHCDMSDAVNILTHTEEVLLTEEQHSAVERLKKEHRAQDLKENLVQDGMDESIEE 723
T LH D+SDA N++ + V K EH +QDG
Sbjct: 1127 YGTTNLHLDVSDAANVMVY-------------VGIPKGEHDQDQEVLRTIQDG------- 1166
Query: 724 PNSDNNKEDTDVSEINDSELLPSGIRGEFKMSRDEMQGTAFTCPHSEGTMVESGGALWDI 783
D E+ + EFK E GALW I
Sbjct: 1167 ----------DADELTIKRFI------EFK---------------------EKPGALWHI 1189
Query: 784 FRRQDVPKLEAYLRKHFKEFRHVYCSPVEQVIHPIHDQCFYLSSEHKKKLKEEFGVEPWT 843
+ +D K+ +L+K +E H +P + PIHDQ +YL + +K+L +E GV+ W
Sbjct: 1190 YAAKDTEKIRQFLKKVAEEEGHE--NPPDH--DPIHDQSWYLDNILRKRLLQEHGVQGWA 1245
Query: 844 FEQKLGEAVFIPAGCPHQVRNLKSCTKVAVDFVSPENVDECLRLTKEFRLLPKNHRARED 903
Q LG+AVFIPAG PHQV NL SC KVA DFVSPE+V C LT+EFR L H ED
Sbjct: 1246 IVQFLGDAVFIPAGAPHQVHNLYSCIKVAEDFVSPEHVKHCFCLTQEFRYLSHTHTNHED 1305
Query: 904 KLEV 907
KL+V
Sbjct: 1306 KLQV 1309
Score = 37.7 bits (86), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 20/31 (64%)
Query: 330 RVYCNHCATSIIDLHRSCPKCSYELCLTCCK 360
R C+ C T+I +LH CPKC + +C+ C +
Sbjct: 681 REMCDACDTTIFNLHWVCPKCGFGVCVDCYR 711
>sp|Q6PCM1|KDM3A_MOUSE Lysine-specific demethylase 3A OS=Mus musculus GN=Kdm3a PE=1 SV=1
Length = 1323
Score = 187 bits (474), Expect = 5e-46, Method: Compositional matrix adjust.
Identities = 150/479 (31%), Positives = 211/479 (44%), Gaps = 106/479 (22%)
Query: 457 ILDNKLTNLRQNRAETGTDM----LCKAASREGSD-------DNLLYCPDSTKIQEDEEL 505
ILD+ +L QN+ + + L S G D DN L C + + +
Sbjct: 906 ILDDIFASLVQNKTSSDSSKRPQGLTIKPSILGFDTPHYWLCDNRLLCLQDPNNKSNWNV 965
Query: 506 FRFQKHWIKGEPVIVRNVLDKVTGLSWEPMVMWRALCENVDSEVSSKMSEVKAIDCLASC 565
FR + W +G+PV+V V K+ W+P + E EV ++C
Sbjct: 966 FR--ECWKQGQPVMVSGVHHKLNTELWKPESFRKEFGEQ----------EVDLVNC---- 1009
Query: 566 EVEISTRQFFKGYTQGRTYDNFW-------------PEMLKLKDWPPSDKFEDLMPRHCD 612
T + G T G +D F P +LKLKDWPP + F D+MP D
Sbjct: 1010 ----RTNEIITGATVGDFWDGFEDVPNRLKNDKEKEPMVLKLKDWPPGEDFRDMMPSRFD 1065
Query: 613 EFISALPFQEYSDPRAGILNLAVKLPSGVLKPDLGPKTYIAYGVAEELGRGDSVTKLHCD 672
+ ++ +P EY+ R G LNLA +LP+ ++PDLGPK Y
Sbjct: 1066 DLMANIPLPEYTR-RDGKLNLASRLPNYFVRPDLGPKMY--------------------- 1103
Query: 673 MSDAVNILTHTEEVLLTEEQHSAVERLKKEHRAQDLKENLVQDGMDESIEEPNSDNNKED 732
+A ++T + T H V D +V G+ P +E+
Sbjct: 1104 --NAYGLITPEDRKYGTTNLHLDVS---------DAANVMVYVGI------PKGQCEQEE 1146
Query: 733 TDVSEINDSELLPSGIRGEFKMSRDEMQGTAFTCPHSEGTMVESGGALWDIFRRQDVPKL 792
+ I D + DE+ F EG E GALW I+ +D K+
Sbjct: 1147 EVLRTIQDGD-------------SDELTIKRFI----EGK--EKPGALWHIYAAKDTEKI 1187
Query: 793 EAYLRKHFKEFRHVYCSPVEQVIHPIHDQCFYLSSEHKKKLKEEFGVEPWTFEQKLGEAV 852
+L+K +E +P + PIHDQ +YL +K+L +E+GV+ W Q LG+ V
Sbjct: 1188 REFLKKVSEE--QGQDNPADH--DPIHDQSWYLDRSLRKRLYQEYGVQGWAIVQFLGDVV 1243
Query: 853 FIPAGCPHQVRNLKSCTKVAVDFVSPENVDECLRLTKEFRLLPKNHRAREDKLEVYLVF 911
FIPAG PHQV NL SC KVA DFVSPE+V C LT+EFR L + H EDKL+V V
Sbjct: 1244 FIPAGAPHQVHNLYSCIKVAEDFVSPEHVKHCFWLTQEFRYLSQTHTNHEDKLQVKNVI 1302
Score = 37.4 bits (85), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 15/49 (30%), Positives = 26/49 (53%)
Query: 330 RVYCNHCATSIIDLHRSCPKCSYELCLTCCKEICEGRLSGRAEMKFQYV 378
R C+ C T+I +LH CP+C + +C+ C + + G A F ++
Sbjct: 659 REMCDVCDTTIFNLHWVCPRCGFGVCVDCYRMKRKNCQQGAAYKTFSWI 707
>sp|Q63679|KDM3A_RAT Lysine-specific demethylase 3A OS=Rattus norvegicus GN=Kdm3a PE=2
SV=1
Length = 1214
Score = 186 bits (473), Expect = 5e-46, Method: Compositional matrix adjust.
Identities = 152/481 (31%), Positives = 213/481 (44%), Gaps = 110/481 (22%)
Query: 457 ILDNKLTNLRQNRAETGTDM------LCKAASREGSD-------DNLLYCPDSTKIQEDE 503
ILD+ +L QN+ T +D+ L S G D DN L C + +
Sbjct: 790 ILDDIFASLVQNK--TSSDLSKRPQGLTIKPSILGFDTPHYWLCDNRLLCLQDPNNKSNW 847
Query: 504 ELFRFQKHWIKGEPVIVRNVLDKVTGLSWEPMVMWRALCENVDSEVSSKMSEVKAIDCLA 563
+FR + W +G+PV+V V K+ W+P + E EV ++C
Sbjct: 848 NVFR--ECWKQGQPVMVSGVHHKLNTELWKPESFRKEFGEQ----------EVDLVNC-- 893
Query: 564 SCEVEISTRQFFKGYTQGRTYDNFW-------------PEMLKLKDWPPSDKFEDLMPRH 610
T + G T G +D F P +LKLKDWPP + F D+MP
Sbjct: 894 ------RTNEIITGATVGDFWDGFEDVPNRLKNEKEKEPMVLKLKDWPPGEDFRDMMPSR 947
Query: 611 CDEFISALPFQEYSDPRAGILNLAVKLPSGVLKPDLGPKTYIAYGVAEELGRGDSVTKLH 670
D+ ++ +P EY+ R G LNLA +LP+ ++PDLGPK Y
Sbjct: 948 FDDLMANIPLPEYTR-RDGKLNLASRLPNYFVRPDLGPKMY------------------- 987
Query: 671 CDMSDAVNILTHTEEVLLTEEQHSAVERLKKEHRAQDLKENLVQDGMDESIEEPNSDNNK 730
+A ++T + T H V D +V G+ P +
Sbjct: 988 ----NAYGLITPEDRKYGTTNLHLDVS---------DAANVMVYVGI------PKGQCEQ 1028
Query: 731 EDTDVSEINDSELLPSGIRGEFKMSRDEMQGTAFTCPHSEGTMVESGGALWDIFRRQDVP 790
E+ + I D + DE+ F EG E GALW I+ +D
Sbjct: 1029 EEEVLRTIQDGD-------------SDELTIKRFI----EGK--EKPGALWHIYAAKDTE 1069
Query: 791 KLEAYLRKHFKEFRHVYCSPVEQVIHPIHDQCFYLSSEHKKKLKEEFGVEPWTFEQKLGE 850
K+ +L+K +E +P + PIHDQ +YL +K+L +E+GV+ W Q LG+
Sbjct: 1070 KIREFLKKVSEEQGQE--NPADH--DPIHDQSWYLDRSLRKRLYQEYGVQGWAIVQFLGD 1125
Query: 851 AVFIPAGCPHQVRNLKSCTKVAVDFVSPENVDECLRLTKEFRLLPKNHRAREDKLEVYLV 910
VFIPAG PHQV NL SC KVA DFVSPE+V C LT+EFR L + H EDKL+V V
Sbjct: 1126 VVFIPAGAPHQVHNLYSCIKVAEDFVSPEHVKHCFWLTQEFRHLSQTHTNHEDKLQVKNV 1185
Query: 911 F 911
Sbjct: 1186 I 1186
Score = 36.6 bits (83), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 15/49 (30%), Positives = 26/49 (53%)
Query: 330 RVYCNHCATSIIDLHRSCPKCSYELCLTCCKEICEGRLSGRAEMKFQYV 378
R C+ C T+I +LH CP+C + +C+ C + + G A F ++
Sbjct: 543 REMCDVCDTTIFNLHWVCPRCGFGVCVDCYRLKRKNCQQGAAYKTFSWI 591
>sp|Q7LBC6|KDM3B_HUMAN Lysine-specific demethylase 3B OS=Homo sapiens GN=KDM3B PE=1 SV=2
Length = 1761
Score = 131 bits (329), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 69/133 (51%), Positives = 84/133 (63%), Gaps = 4/133 (3%)
Query: 775 ESGGALWDIFRRQDVPKLEAYLRKHFKEFRHVYCSPVEQVIHPIHDQCFYLSSEHKKKLK 834
E GALW I+ +D K+ LRK +E +P + PIHDQ +YL +K+L
Sbjct: 1608 EKPGALWHIYAAKDAEKIRELLRKVGEE--QGQENPPDH--DPIHDQSWYLDQTLRKRLY 1663
Query: 835 EEFGVEPWTFEQKLGEAVFIPAGCPHQVRNLKSCTKVAVDFVSPENVDECLRLTKEFRLL 894
EE+GV+ W Q LG+AVFIPAG PHQV NL SC KVA DFVSPE+V C RLT+EFR L
Sbjct: 1664 EEYGVQGWAIVQFLGDAVFIPAGAPHQVHNLYSCIKVAEDFVSPEHVKHCFRLTQEFRHL 1723
Query: 895 PKNHRAREDKLEV 907
H EDKL+V
Sbjct: 1724 SNTHTNHEDKLQV 1736
Score = 116 bits (290), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 91/283 (32%), Positives = 138/283 (48%), Gaps = 49/283 (17%)
Query: 444 ISDLEKEARDLVLILDNKLTNLRQNRAETGTDMLCKAASREGSDDNLLYCPDSTKIQEDE 503
++D +KE +++V+ L N L T LC D L C + +
Sbjct: 1359 LTDTQKEVKEMVMGL-NVLD------PHTSHSWLC---------DGRLLCLHDPSNKNNW 1402
Query: 504 ELFRFQKHWIKGEPVIVRNVLDKVTGLSWEPMVMWRALCENVDSEVSSKMSEVKAIDCLA 563
++FR + W +G+PV+V V K+ W+P + + +V ++C
Sbjct: 1403 KIFR--ECWKQGQPVLVSGVHKKLKSELWKPEAFSQEFGDQ----------DVDLVNC-R 1449
Query: 564 SCEV--EISTRQFFKGY----TQGRTYDNFWPEMLKLKDWPPSDKFEDLMPRHCDEFISA 617
+C + ++ R F+ G+ + R+ D P +LKLKDWPP + F D+MP ++ +
Sbjct: 1450 NCAIISDVKVRDFWDGFEIICKRLRSEDG-QPMVLKLKDWPPGEDFRDMMPTRFEDLMEN 1508
Query: 618 LPFQEYSDPRAGILNLAVKLPSGVLKPDLGPKTYIAYGVAEELGRGDSVTKLHCDMSDAV 677
LP EY+ R G LNLA +LPS ++PDLGPK Y AYG+ R T LH D+SDAV
Sbjct: 1509 LPLPEYTK-RDGRLNLASRLPSYFVRPDLGPKMYNAYGLITAEDRRVGTTNLHLDVSDAV 1567
Query: 678 NIL----------THTEEVLLTEEQHSAVERLKKEHRAQDLKE 710
N++ H EEVL T ++ A E K+ R D KE
Sbjct: 1568 NVMVYVGIPIGEGAHDEEVLKTIDEGDADEVTKQ--RIHDGKE 1608
>sp|Q6ZPY7|KDM3B_MOUSE Lysine-specific demethylase 3B OS=Mus musculus GN=Kdm3b PE=1 SV=2
Length = 1562
Score = 129 bits (324), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 69/133 (51%), Positives = 84/133 (63%), Gaps = 4/133 (3%)
Query: 775 ESGGALWDIFRRQDVPKLEAYLRKHFKEFRHVYCSPVEQVIHPIHDQCFYLSSEHKKKLK 834
E GALW I+ +D K+ LRK +E +P + PIHDQ +YL +K+L
Sbjct: 1409 EKPGALWHIYAAKDAEKIRELLRKVGEE--QGQENPPDH--DPIHDQSWYLDQILRKRLF 1464
Query: 835 EEFGVEPWTFEQKLGEAVFIPAGCPHQVRNLKSCTKVAVDFVSPENVDECLRLTKEFRLL 894
EE+GV+ W Q LG+AVFIPAG PHQV NL SC KVA DFVSPE+V C RLT+EFR L
Sbjct: 1465 EEYGVQGWAIVQFLGDAVFIPAGAPHQVHNLYSCIKVAEDFVSPEHVKHCFRLTQEFRHL 1524
Query: 895 PKNHRAREDKLEV 907
H EDKL+V
Sbjct: 1525 SNTHTNHEDKLQV 1537
Score = 114 bits (286), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 77/219 (35%), Positives = 114/219 (52%), Gaps = 31/219 (14%)
Query: 508 FQKHWIKGEPVIVRNVLDKVTGLSWEPMVMWRALCENVDSEVSSKMSEVKAIDCLASCEV 567
F++ W +G+PV+V V K+ W+P + + +V ++C +C +
Sbjct: 1206 FRECWKQGQPVLVSGVHKKLKSELWKPEAFSQEFGDQ----------DVDLVNC-RNCAI 1254
Query: 568 --EISTRQFFKGY----TQGRTYDNFWPEMLKLKDWPPSDKFEDLMPRHCDEFISALPFQ 621
++ R F+ G+ + R+ D P +LKLKDWPP + F D+MP ++ + LP
Sbjct: 1255 ISDVKVRDFWDGFEIICKRLRSEDG-QPMVLKLKDWPPGEDFRDMMPTRFEDLMENLPLP 1313
Query: 622 EYSDPRAGILNLAVKLPSGVLKPDLGPKTYIAYGVAEELGRGDSVTKLHCDMSDAVNIL- 680
EY+ R G LNLA +LPS ++PDLGPK Y AYG+ R T LH D+SDAVN++
Sbjct: 1314 EYTK-RDGRLNLASRLPSYFVRPDLGPKMYNAYGLITAEDRRVGTTNLHLDVSDAVNVMV 1372
Query: 681 ---------THTEEVLLTEEQHSAVERLKKEHRAQDLKE 710
H EEVL T ++ A E K+ R D KE
Sbjct: 1373 YVGIPVGEGAHDEEVLKTIDEGDADEVTKQ--RIHDGKE 1409
>sp|P97609|HAIR_RAT Protein hairless OS=Rattus norvegicus GN=Hr PE=2 SV=2
Length = 1181
Score = 109 bits (273), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 112/396 (28%), Positives = 158/396 (39%), Gaps = 92/396 (23%)
Query: 506 FR-FQKHWIKGEPVIVRNVLDKVTGLSWEPMVMWRALCENVDSEVSSKMSEVKAIDCLAS 564
FR FQ+HW +G+PV+V + K LS M L V + + + ++D A
Sbjct: 851 FRLFQEHWRQGQPVLVSGI-QKTLRLSLWGMEALGTLGGQVQTLTALGPPQPTSLDSTA- 908
Query: 565 CEVEISTRQFFKGYTQGRTYDNFWPEMLKLKDWPPSDKFEDLMPRHCDEFISALPFQEYS 624
F+KG++ + L P DK E + + S+LP EY
Sbjct: 909 ---------FWKGFSHPEARPKLDEGSVLLLHRPLGDKDESRV----ENLASSLPLPEYC 955
Query: 625 DPRAGILNLAVKLPSGVLKPDLGPKTYIAYGVAEELGRGDSVTKLHC-DMSDAVNILTHT 683
G LNLA LP G+ L P+ + AYGV RG TK C ++SD ++IL H
Sbjct: 956 A-HQGKLNLASYLPLGLTLHPLEPQLWAAYGVNSH--RGHLGTKNLCVEVSDLISILVHA 1012
Query: 684 EEVLLTEEQHSAVERLKKEHRAQDLKENLVQDGMDESIEEPNSDNNKEDTDVSEINDSEL 743
E +L +RAQ K+ L
Sbjct: 1013 EA------------QLPPWYRAQ--KDFL------------------------------- 1027
Query: 744 LPSGIRGEFKMSRDEMQGTAFTCPHSEGTMVESGGALWDIFRRQDVPKLEAYLRKHFKEF 803
SG+ GE S P S+ + V W +FR QD + + F
Sbjct: 1028 --SGLDGEGLWS-----------PGSQTSTV------WHVFRAQDA--------QRIRRF 1060
Query: 804 RHVYCSPVEQVIHPIHDQCFYLSSEHKKKLKEEFGVEPWTFEQKLGEAVFIPAGCPHQVR 863
+ C + P YL S +++L+EE+GV WT Q GEAV +PAG PHQV+
Sbjct: 1061 LQMVCPAGAGTLEPGAPGSCYLDSGLRRRLREEWGVSCWTLLQAPGEAVLVPAGAPHQVQ 1120
Query: 864 NLKSCTKVAVDFVSPENVDECLRLTKEFRLLPKNHR 899
L S V F+SPE +L + LP +HR
Sbjct: 1121 GLVSTISVTQHFLSPETSALSAQLCHQGASLPPDHR 1156
>sp|O43593|HAIR_HUMAN Protein hairless OS=Homo sapiens GN=HR PE=1 SV=5
Length = 1189
Score = 103 bits (256), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 103/401 (25%), Positives = 158/401 (39%), Gaps = 111/401 (27%)
Query: 508 FQKHWIKGEPVIVRNVLDKVTGLSWEPMVMWRALCENVDSEVSSKMSEVKAIDCLASCEV 567
FQ+HW +G+PV+V + + G W + + +V+A+ L +
Sbjct: 862 FQEHWRQGQPVLVSGIQRTLQGNLWG------------TEALGALGGQVQALSPLGPPQP 909
Query: 568 E-ISTRQFFKGYTQGRTYDNFWPEMLKLKDWPPSDKFEDLM---------PRHCDEFISA 617
+ + F++G++ WPE+ P SD+ L+ + ++
Sbjct: 910 SSLGSTTFWEGFS--------WPELR-----PKSDEGSVLLLHRALGDEDTSRVENLAAS 956
Query: 618 LPFQEYSDPRAGILNLAVKLPSGVLKPDLGPKTYIAYGVAEELGRGDSVTKLHC-DMSDA 676
LP EY G LNLA LP G+ L P+ + AYGV+ RG TK C +++D
Sbjct: 957 LPLPEYCA-LHGKLNLASYLPPGLALRPLEPQLWAAYGVSPH--RGHLGTKNLCVEVADL 1013
Query: 677 VNILTHTEEVLLTEEQHSAVERLKKEHRAQDLKENLVQDGMDESIEEPNSDNNKEDTDVS 736
V+IL H + L HRAQ K+ L
Sbjct: 1014 VSILVHADTPL------------PAWHRAQ--KDFL------------------------ 1035
Query: 737 EINDSELLPSGIRGEFKMSRDEMQGTAFTCPHSEGTMVESGGALWDIFRRQDVPKLEAYL 796
SG+ GE S G+ V + +W +FR QD
Sbjct: 1036 ---------SGLDGEGLWS--------------PGSQVST---VWHVFRAQDA------- 1062
Query: 797 RKHFKEFRHVYCSPVEQVIHPIHDQCFYLSSEHKKKLKEEFGVEPWTFEQKLGEAVFIPA 856
+ + F + C + P YL + +++L+EE+GV WT Q GEAV +PA
Sbjct: 1063 -QRIRRFLQMVCPAGAGALEPGAPGSCYLDAGLRRRLREEWGVSCWTLLQAPGEAVLVPA 1121
Query: 857 GCPHQVRNLKSCTKVAVDFVSPENVDECLRLTKEFRLLPKN 897
G PHQV+ L S V F+SPE +L + LP +
Sbjct: 1122 GAPHQVQGLVSTVSVTQHFLSPETSALSAQLCHQGPSLPPD 1162
Score = 35.8 bits (81), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 23/44 (52%), Gaps = 2/44 (4%)
Query: 333 CNHCATSIIDLHRSCPKCSYELCLTCCKEICEGRLSGRAEMKFQ 376
C+ C + + H CP+CS+ LC+ C + GR R + FQ
Sbjct: 600 CSRCHHGLFNTHWRCPRCSHRLCVACGRVAGTGR--AREKAGFQ 641
>sp|Q61645|HAIR_MOUSE Protein hairless OS=Mus musculus GN=Hr PE=2 SV=2
Length = 1182
Score = 101 bits (251), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 107/393 (27%), Positives = 153/393 (38%), Gaps = 91/393 (23%)
Query: 508 FQKHWIKGEPVIVRNVLDKVTGLSWEPMVMWRALCENVDSEVSSKMSEVKAIDCLASCEV 567
FQ+HW +G+PV+V + K LS M L V + + + +D A
Sbjct: 855 FQEHWRQGQPVLVSGI-QKTLRLSLWGMEALGTLGGQVQTLTALGPPQPTNLDSTA---- 909
Query: 568 EISTRQFFKGYTQGRTYDNFWPEMLKLKDWPPSDKFEDLMPRHCDEFISALPFQEYSDPR 627
F++G++ T + L DK + S+LP EY
Sbjct: 910 ------FWEGFSHPETRPKLDEGSVLLLHRTLGDKDASRV----QNLASSLPLPEYCA-H 958
Query: 628 AGILNLAVKLPSGVLKPDLGPKTYIAYGVAEELGRGDSVTKLHC-DMSDAVNILTHTEEV 686
G LNLA LP G+ L P+ + AYGV RG TK C ++SD ++IL H E
Sbjct: 959 QGKLNLASYLPLGLTLHPLEPQLWAAYGVNSH--RGHLGTKNLCVEVSDLISILVHAEA- 1015
Query: 687 LLTEEQHSAVERLKKEHRAQDLKENLVQDGMDESIEEPNSDNNKEDTDVSEINDSELLPS 746
+L +RAQ K+ L S
Sbjct: 1016 -----------QLPPWYRAQ--KDFL---------------------------------S 1029
Query: 747 GIRGEFKMSRDEMQGTAFTCPHSEGTMVESGGALWDIFRRQDVPKLEAYLRKHFKEFRHV 806
G+ GE S P S+ + V W +FR QD + + F +
Sbjct: 1030 GLDGEGLWS-----------PGSQTSTV------WHVFRAQDA--------QRIRRFLQM 1064
Query: 807 YCSPVEQVIHPIHDQCFYLSSEHKKKLKEEFGVEPWTFEQKLGEAVFIPAGCPHQVRNLK 866
C + P YL + +++L+EE+GV WT Q GEAV +PAG PHQV+ L
Sbjct: 1065 VCPAGAGTLEPGAPGSCYLDAGLRRRLREEWGVSCWTLLQAPGEAVLVPAGAPHQVQGLV 1124
Query: 867 SCTKVAVDFVSPENVDECLRLTKEFRLLPKNHR 899
S V F+SPE +L + LP +HR
Sbjct: 1125 STISVTQHFLSPETSALSAQLYHQGASLPPDHR 1157
>sp|Q15652|JHD2C_HUMAN Probable JmjC domain-containing histone demethylation protein 2C
OS=Homo sapiens GN=JMJD1C PE=1 SV=2
Length = 2540
Score = 97.8 bits (242), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 60/152 (39%), Positives = 88/152 (57%), Gaps = 11/152 (7%)
Query: 775 ESGGALWDIFRRQDVPKLEAYLRKHFKEFRHVYCSPVEQVIHPIHDQCFYLSSEHKKKLK 834
E GALW I+ +DV K+ +L+K KE + + P PI DQ +Y++ + +++L
Sbjct: 2385 EIPGALWHIYAGKDVDKIREFLQKISKE-QGLEVLPEHD---PIRDQSWYVNKKLRQRLL 2440
Query: 835 EEFGVEPWTFEQKLGEAVFIPAGCPHQVRNLKSCTKVAVDFVSPENVDECLRLTKEFRLL 894
EE+GV T Q LG+A+ +PAG HQV+N SC +V DFVSPE++ E LT+E RLL
Sbjct: 2441 EEYGVRTCTLIQFLGDAIVLPAGALHQVQNFHSCIQVTEDFVSPEHLVESFHLTQELRLL 2500
Query: 895 PKNHRAREDKLEVYLVF------IKRKCYVHE 920
K +DKL+V + + R +HE
Sbjct: 2501 -KEEINYDDKLQVKNILYHAVKEMVRALKIHE 2531
Score = 92.4 bits (228), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 55/178 (30%), Positives = 94/178 (52%), Gaps = 14/178 (7%)
Query: 508 FQKHWIKGEPVIVRNVLDKVTGLSWEPMVMWRALCENVDSEVSSKMSEVKAIDCLASCEV 567
F++ W +G+P +V V K+ + +W+A E++ + +++ ++C S
Sbjct: 2182 FKECWKQGQPAVVSGVHKKMN------ISLWKA--ESISLDFGDHQADL--LNCKDSIIS 2231
Query: 568 EISTRQFFKGYTQ-GRTYDNFWPE--MLKLKDWPPSDKFEDLMPRHCDEFISALPFQEYS 624
+ ++F+ G+ + + N E +LKLKDWP + F+ +MP ++ + +LP EY
Sbjct: 2232 NANVKEFWDGFEEVSKRQKNKSGETVVLKLKDWPSGEDFKTMMPARYEDLLKSLPLPEYC 2291
Query: 625 DPRAGILNLAVKLPSGVLKPDLGPKTYIAYGVAEELGRGDSVTKLHCDMSDAVNILTH 682
+P G NLA LP ++PDLGP+ AYGV T LH ++SD VNIL +
Sbjct: 2292 NPE-GKFNLASHLPGFFVRPDLGPRLCSAYGVVAAKDHDIGTTNLHIEVSDVVNILVY 2348
>sp|Q69ZK6|JHD2C_MOUSE Probable JmjC domain-containing histone demethylation protein 2C
OS=Mus musculus GN=Jmjd1c PE=1 SV=3
Length = 2350
Score = 96.7 bits (239), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 55/134 (41%), Positives = 82/134 (61%), Gaps = 5/134 (3%)
Query: 778 GALWDIFRRQDVPKLEAYLRKHFKEFRHVYCSPVEQVIHPIHDQCFYLSSEHKKKLKEEF 837
GALW I+ +DV K+ +L+K KE + + P PI DQ +Y++ + +++L EE+
Sbjct: 2198 GALWHIYAGKDVDKIREFLQKISKE-QGLEVLPEHD---PIRDQSWYVNRKLRQRLLEEY 2253
Query: 838 GVEPWTFEQKLGEAVFIPAGCPHQVRNLKSCTKVAVDFVSPENVDECLRLTKEFRLLPKN 897
GV T Q LG+A+ +PAG HQV+N SC +V DFVSPE++ + LT+E RLL K
Sbjct: 2254 GVRACTLIQFLGDAIVLPAGTLHQVQNFHSCVQVTEDFVSPEHLVQSFHLTQELRLL-KE 2312
Query: 898 HRAREDKLEVYLVF 911
+DKL+V +
Sbjct: 2313 EINYDDKLQVKNIL 2326
Score = 88.6 bits (218), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 55/178 (30%), Positives = 93/178 (52%), Gaps = 14/178 (7%)
Query: 508 FQKHWIKGEPVIVRNVLDKVTGLSWEPMVMWRALCENVDSEVSSKMSEVKAIDCLASCEV 567
F++ W +G+P +V V K+ + +W+A E++ + +++ ++C S
Sbjct: 1992 FKECWKQGQPAVVSGVHKKMN------ISLWKA--ESISLDFGDHQADL--LNCKDSIVS 2041
Query: 568 EISTRQFFKGYTQ-GRTYDNFWPE--MLKLKDWPPSDKFEDLMPRHCDEFISALPFQEYS 624
+ ++F+ G+ + + N E +LKLKD P + F+ +MP ++F+ LP EY
Sbjct: 2042 NANVKEFWDGFEEVSKRQKNKGGETVVLKLKDCPSGEDFKAMMPTRYEDFLRCLPLPEYC 2101
Query: 625 DPRAGILNLAVKLPSGVLKPDLGPKTYIAYGVAEELGRGDSVTKLHCDMSDAVNILTH 682
+P G NLA LP ++PDLGP+ AYGVA T LH + SD VN+L +
Sbjct: 2102 NPE-GKFNLASHLPGFFVRPDLGPRLCSAYGVAAAKDHDIGTTNLHIEASDVVNVLVY 2158
>sp|Q80TY5|VP13B_MOUSE Vacuolar protein sorting-associated protein 13B OS=Mus musculus
GN=Vps13b PE=1 SV=2
Length = 4013
Score = 39.3 bits (90), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 36/143 (25%), Positives = 63/143 (44%), Gaps = 15/143 (10%)
Query: 43 NMKDIAQEKEKERHVLQASSGAKKPRMNQDFGFSDSTRIPKKPRSALNRKVSYENGDEDE 102
NM Q ++ R +L + DF S RI P + +S EN +E
Sbjct: 1665 NMASSIQRHQERRAILTP--------ILTDF----SVRITGAPAIIFTKIISQENLHMEE 1712
Query: 103 VLDKRTSLEVEMSEELDY--DAEEIALIRIRERRRSRRLEPDGAMIKTNPHKGRQKIDSA 160
+L SLEV ++ LD+ ++ L+ LEP + + + ++K+D+
Sbjct: 1713 ILVCGHSLEVNITTNLDFFLSVAQVQLLHQLIVANMTGLEPSTKATEISKQE-QKKVDTF 1771
Query: 161 NSSSCSSSSTSSGSSDSVLKSNS 183
+ + +SS SG+ DS + S+S
Sbjct: 1772 DGGTAETSSRYSGAQDSGIGSDS 1794
>sp|Q9VJ97|JMJD4_DROME JmjC domain-containing protein 4 homolog OS=Drosophila melanogaster
GN=CG7200 PE=2 SV=1
Length = 425
Score = 38.1 bits (87), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 29/51 (56%)
Query: 831 KKLKEEFGVEPWTFEQKLGEAVFIPAGCPHQVRNLKSCTKVAVDFVSPENV 881
+K+ +E V +T Q+ EAVF+P+G HQV NL V ++ + N+
Sbjct: 255 EKMLDEHNVRYYTINQRANEAVFVPSGWFHQVWNLTDTISVNHNWFNGCNI 305
>sp|Q7Z7G8|VP13B_HUMAN Vacuolar protein sorting-associated protein 13B OS=Homo sapiens
GN=VPS13B PE=1 SV=2
Length = 4022
Score = 37.7 bits (86), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 30/108 (27%), Positives = 50/108 (46%), Gaps = 3/108 (2%)
Query: 78 STRIPKKPRSALNRKVSYENGDEDEVLDKRTSLEVEMSEELDY--DAEEIALIRIRERRR 135
S RI P + VS EN +E+L SLEV ++ LD+ ++ L+
Sbjct: 1694 SVRITGAPAVIFTKVVSPENLHTEEILVCGHSLEVNITTNLDFFLSVAQVQLLHQLIVAN 1753
Query: 136 SRRLEPDGAMIKTNPHKGRQKIDSANSSSCSSSSTSSGSSDSVLKSNS 183
LEP + + + ++K+D + +SS SG+ DS + S+S
Sbjct: 1754 MTGLEPSNKAAEISKQE-QKKVDIFDGGMAETSSRYSGAQDSGIGSDS 1800
>sp|Q922M5|CDA7L_MOUSE Cell division cycle-associated 7-like protein OS=Mus musculus
GN=Cdca7l PE=2 SV=1
Length = 438
Score = 35.8 bits (81), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 32/69 (46%), Gaps = 9/69 (13%)
Query: 204 CHQCMKS--ERKYVV---PCGKCRTKVYCIQCIKQWYP---KMSELDVAEICPFCRRNCN 255
CHQC + + K V CG R + +C C++ Y + + LD CP CR CN
Sbjct: 341 CHQCRQKTIDTKTVCRNQSCGGVRGQ-FCGPCLRNRYGEDVRTALLDPKWTCPPCRGICN 399
Query: 256 CSVCLHTSG 264
CS C G
Sbjct: 400 CSYCRRRDG 408
>sp|Q4G059|CDA7L_RAT Cell division cycle-associated 7-like protein OS=Rattus norvegicus
GN=Cdca7l PE=2 SV=1
Length = 438
Score = 35.8 bits (81), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 32/69 (46%), Gaps = 9/69 (13%)
Query: 204 CHQCMKS--ERKYVV---PCGKCRTKVYCIQCIKQWYP---KMSELDVAEICPFCRRNCN 255
CHQC + + K V CG R + +C C++ Y + + LD CP CR CN
Sbjct: 341 CHQCRQKTIDTKTVCRNQGCGGVRGQ-FCGPCLRNRYGEDVRTALLDPKWTCPPCRGICN 399
Query: 256 CSVCLHTSG 264
CS C G
Sbjct: 400 CSYCRRRDG 408
>sp|P0C775|P28_VACC8 E3 ubiquitin-protein ligase p28-like OS=Vaccinia virus (strain
LC16m8) GN=p28 PE=3 SV=1
Length = 239
Score = 35.0 bits (79), Expect = 2.8, Method: Composition-based stats.
Identities = 19/62 (30%), Positives = 29/62 (46%), Gaps = 5/62 (8%)
Query: 194 RQEKELERIKCHQCMKSER----KYVVPCGKCRTKVYCIQCIKQWYPKMSELDVAEICPF 249
R KE E C++ + S+R +Y C ++CI CI W+ E ++ CP
Sbjct: 163 RVSKEKECGICYEVVYSKRLENDRYFGLLDSC-NHIFCITCINIWHKTRRETGASDNCPI 221
Query: 250 CR 251
CR
Sbjct: 222 CR 223
>sp|Q49PZ0|P28_VACC0 E3 ubiquitin ligase p28-like OS=Vaccinia virus (strain LC16m0)
GN=p28 PE=3 SV=1
Length = 239
Score = 35.0 bits (79), Expect = 2.8, Method: Composition-based stats.
Identities = 19/62 (30%), Positives = 29/62 (46%), Gaps = 5/62 (8%)
Query: 194 RQEKELERIKCHQCMKSER----KYVVPCGKCRTKVYCIQCIKQWYPKMSELDVAEICPF 249
R KE E C++ + S+R +Y C ++CI CI W+ E ++ CP
Sbjct: 163 RVSKEKECGICYEVVYSKRLENDRYFGLLDSC-NHIFCITCINIWHKTRRETGASDNCPI 221
Query: 250 CR 251
CR
Sbjct: 222 CR 223
>sp|Q96GN5|CDA7L_HUMAN Cell division cycle-associated 7-like protein OS=Homo sapiens
GN=CDCA7L PE=1 SV=2
Length = 454
Score = 34.3 bits (77), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 30/68 (44%), Gaps = 7/68 (10%)
Query: 204 CHQCMKSERKYVVPC---GKCRTK-VYCIQCIKQWYP---KMSELDVAEICPFCRRNCNC 256
CHQC + C G C + +C C++ Y + + LD +CP CR CNC
Sbjct: 353 CHQCRQKTIDTKTVCRNQGCCGVRGQFCGPCLRNRYGEDVRSALLDPDWVCPPCRGICNC 412
Query: 257 SVCLHTSG 264
S C G
Sbjct: 413 SYCRKRDG 420
>sp|P40511|SPO22_YEAST Sporulation-specific protein 22 OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=SPO22 PE=3 SV=2
Length = 975
Score = 34.3 bits (77), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 32/125 (25%), Positives = 51/125 (40%), Gaps = 26/125 (20%)
Query: 607 MPRHCDEFISALPFQEYSDP----------RAGILNLAVKLPSGVLKPDLGPKTYIAYGV 656
P++C +FI +P Q+++ P +A IL L + K D K + Y
Sbjct: 697 FPQYCIQFIDLIPVQDFTFPKMYHFTYWRFKATILQLIIAKEKA--KQDQHQKDWDIYEK 754
Query: 657 AEELGRGDSVTKLHCDMSDAVNI-------------LT-HTEEVLLTEEQHSAVERLKKE 702
+EEL +V K + D ++ LT H E L+ +Q ++ LKK
Sbjct: 755 SEELVNSINVMKKSSEFKDGSSLEDRNTLHECFLEALTIHLESALMMPDQTRILDILKKT 814
Query: 703 HRAQD 707
QD
Sbjct: 815 ELYQD 819
>sp|B5FF87|RHLB_VIBFM ATP-dependent RNA helicase RhlB OS=Vibrio fischeri (strain MJ11)
GN=rhlB PE=3 SV=1
Length = 432
Score = 33.1 bits (74), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 20/74 (27%), Positives = 32/74 (43%), Gaps = 14/74 (18%)
Query: 783 IFRRQDVP--------------KLEAYLRKHFKEFRHVYCSPVEQVIHPIHDQCFYLSSE 828
IFRR P +++ +H +E HV P ++ H I ++ FY S++
Sbjct: 182 IFRRMPAPTERLNMLFSATLSYRVQELAFEHMQEPEHVVVEPEQKTGHRIKEELFYPSND 241
Query: 829 HKKKLKEEFGVEPW 842
HK L + E W
Sbjct: 242 HKMALLQTLIEEEW 255
>sp|Q9P3U8|YJ95_SCHPO Uncharacterized RING finger protein C548.05c OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=SPCC548.05c PE=4 SV=1
Length = 468
Score = 33.1 bits (74), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 26/101 (25%), Positives = 45/101 (44%), Gaps = 15/101 (14%)
Query: 157 IDSANSSSCSSSSTSSGSSDSVLKSNSNNNGRCTARNRQEKELERIK----CHQCMKS-E 211
I +NS++ +SS + S + SNS N + + ++IK C C ++ +
Sbjct: 34 IPQSNSTTFASSDATQMYKKSRISSNSENKKQIPDTKTLLETFQKIKKTLECPICTEALQ 93
Query: 212 RKYVVPCGKCRTKVYCIQCIKQWYPKMSELDVAEICPFCRR 252
R + CG YC +C+ W L ++ CP CR+
Sbjct: 94 RPFTTHCG----HTYCYECLLNW------LKESKSCPTCRQ 124
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.318 0.134 0.406
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 355,623,456
Number of Sequences: 539616
Number of extensions: 15769403
Number of successful extensions: 65506
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 62
Number of HSP's successfully gapped in prelim test: 160
Number of HSP's that attempted gapping in prelim test: 63254
Number of HSP's gapped (non-prelim): 1642
length of query: 935
length of database: 191,569,459
effective HSP length: 127
effective length of query: 808
effective length of database: 123,038,227
effective search space: 99414887416
effective search space used: 99414887416
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 66 (30.0 bits)