Query 002330
Match_columns 935
No_of_seqs 221 out of 308
Neff 4.2
Searched_HMMs 46136
Date Thu Mar 28 21:38:45 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002330.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/002330hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1356 Putative transcription 100.0 9E-179 2E-183 1527.6 30.1 641 196-914 224-871 (889)
2 PF10497 zf-4CXXC_R1: Zinc-fin 99.8 3.3E-21 7.2E-26 180.7 2.7 75 196-270 2-87 (105)
3 PF02373 JmjC: JmjC domain, hy 99.5 2.7E-14 5.9E-19 131.2 5.9 86 776-875 29-114 (114)
4 PF13621 Cupin_8: Cupin-like d 98.9 2.3E-10 5E-15 117.2 1.5 40 840-879 207-249 (251)
5 smart00558 JmjC A domain famil 96.7 0.00064 1.4E-08 56.8 1.2 54 613-684 3-56 (57)
6 KOG1356 Putative transcription 95.9 0.015 3.3E-07 71.1 7.4 77 278-362 184-261 (889)
7 KOG2131 Uncharacterized conser 95.8 0.0086 1.9E-07 67.6 4.4 60 836-895 262-322 (427)
8 cd02340 ZZ_NBR1_like Zinc fing 95.4 0.0074 1.6E-07 49.0 1.4 31 331-361 1-32 (43)
9 cd02249 ZZ Zinc finger, ZZ typ 94.7 0.013 2.8E-07 47.8 1.1 32 332-363 2-34 (46)
10 cd02335 ZZ_ADA2 Zinc finger, Z 94.6 0.016 3.5E-07 48.0 1.3 32 332-363 2-35 (49)
11 cd02339 ZZ_Mind_bomb Zinc fing 94.0 0.026 5.5E-07 46.5 1.4 30 331-360 1-32 (45)
12 PF00569 ZZ: Zinc finger, ZZ t 93.7 0.035 7.6E-07 45.5 1.6 36 329-364 3-40 (46)
13 smart00291 ZnF_ZZ Zinc-binding 93.4 0.039 8.4E-07 44.8 1.4 36 330-365 4-40 (44)
14 PF07883 Cupin_2: Cupin domain 92.2 0.062 1.3E-06 45.5 1.1 26 843-868 38-63 (71)
15 cd02344 ZZ_HERC2 Zinc finger, 92.1 0.077 1.7E-06 43.9 1.4 31 331-361 1-33 (45)
16 COG1917 Uncharacterized conser 92.0 0.067 1.5E-06 51.4 1.2 57 812-873 57-115 (131)
17 KOG2130 Phosphatidylserine-spe 91.2 0.13 2.8E-06 57.6 2.5 43 840-882 261-303 (407)
18 cd02341 ZZ_ZZZ3 Zinc finger, Z 91.2 0.11 2.3E-06 43.5 1.4 32 332-363 2-37 (48)
19 cd02345 ZZ_dah Zinc finger, ZZ 90.3 0.14 3.1E-06 42.6 1.4 33 331-363 1-35 (49)
20 cd02338 ZZ_PCMF_like Zinc fing 89.7 0.16 3.6E-06 42.3 1.3 33 331-363 1-35 (49)
21 COG0662 {ManC} Mannose-6-phosp 89.4 0.26 5.6E-06 47.9 2.6 43 841-883 74-116 (127)
22 cd02337 ZZ_CBP Zinc finger, ZZ 86.6 0.27 5.9E-06 39.8 0.7 29 332-361 2-31 (41)
23 TIGR03214 ura-cupin putative a 85.5 0.42 9.1E-06 52.1 1.7 30 837-866 213-242 (260)
24 KOG0823 Predicted E3 ubiquitin 84.7 0.96 2.1E-05 48.9 3.9 49 198-252 44-92 (230)
25 cd02334 ZZ_dystrophin Zinc fin 84.5 0.68 1.5E-05 38.9 2.1 35 331-365 1-37 (49)
26 cd00162 RING RING-finger (Real 81.5 1.2 2.6E-05 33.8 2.3 42 204-252 2-43 (45)
27 PRK09943 DNA-binding transcrip 81.3 1.1 2.4E-05 45.9 2.6 55 820-879 129-183 (185)
28 PHA02926 zinc finger-like prot 81.1 0.69 1.5E-05 49.9 1.1 54 199-253 168-228 (242)
29 PRK13290 ectC L-ectoine syntha 79.0 1.3 2.8E-05 43.6 2.2 37 841-879 74-110 (125)
30 PLN03208 E3 ubiquitin-protein 78.4 2.5 5.5E-05 44.8 4.2 52 199-253 16-77 (193)
31 PF07649 C1_3: C1-like domain; 77.6 0.94 2E-05 33.9 0.6 27 332-358 2-29 (30)
32 TIGR00218 manA mannose-6-phosp 76.8 1.3 2.7E-05 49.2 1.6 15 847-861 156-170 (302)
33 cd02343 ZZ_EF Zinc finger, ZZ 75.0 1.5 3.3E-05 36.9 1.2 35 331-365 1-36 (48)
34 COG4101 Predicted mannose-6-ph 74.6 1.4 3.1E-05 43.6 1.1 26 843-868 89-114 (142)
35 PF13639 zf-RING_2: Ring finge 74.5 1 2.2E-05 35.9 0.1 29 215-251 16-44 (44)
36 PRK15131 mannose-6-phosphate i 74.2 1.6 3.5E-05 50.5 1.6 17 845-861 240-256 (389)
37 PF01050 MannoseP_isomer: Mann 74.1 1.9 4.1E-05 43.8 1.9 22 847-868 107-128 (151)
38 cd02342 ZZ_UBA_plant Zinc fing 72.2 2.1 4.6E-05 35.4 1.4 32 331-362 1-34 (43)
39 KOG0317 Predicted E3 ubiquitin 70.3 2.9 6.3E-05 46.7 2.4 47 199-254 237-283 (293)
40 PHA02929 N1R/p28-like protein; 70.3 3 6.6E-05 45.5 2.5 46 201-253 174-225 (238)
41 smart00184 RING Ring finger. E 70.2 2.8 6.2E-05 30.5 1.6 27 218-250 13-39 (39)
42 KOG0320 Predicted E3 ubiquitin 70.0 4.8 0.0001 42.4 3.7 47 199-252 129-175 (187)
43 PRK04190 glucose-6-phosphate i 68.9 3.5 7.6E-05 43.5 2.5 43 840-883 118-160 (191)
44 COG1482 ManA Phosphomannose is 68.8 2.5 5.4E-05 47.8 1.5 19 844-862 160-178 (312)
45 KOG2508 Predicted phospholipas 67.4 5.6 0.00012 45.8 3.8 39 505-543 33-74 (437)
46 KOG0978 E3 ubiquitin ligase in 67.4 1.3 2.9E-05 54.4 -1.0 44 200-251 642-685 (698)
47 PF13920 zf-C3HC4_3: Zinc fing 67.0 2.8 6.1E-05 34.4 1.1 42 202-252 3-45 (50)
48 PLN02288 mannose-6-phosphate i 64.7 3.3 7.2E-05 48.1 1.5 15 847-861 256-270 (394)
49 PF10571 UPF0547: Uncharacteri 63.7 4.1 8.9E-05 30.3 1.3 23 332-354 2-24 (26)
50 TIGR00599 rad18 DNA repair pro 63.0 5.7 0.00012 46.3 3.0 48 199-255 24-71 (397)
51 KOG4582 Uncharacterized conser 62.7 3.3 7.2E-05 45.9 1.0 33 330-362 152-186 (278)
52 PF13248 zf-ribbon_3: zinc-rib 62.2 3.8 8.2E-05 30.0 0.9 25 330-354 2-26 (26)
53 PF15227 zf-C3HC4_4: zinc fing 61.7 4.3 9.4E-05 32.8 1.2 28 220-250 15-42 (42)
54 TIGR01479 GMP_PMI mannose-1-ph 61.1 4.4 9.6E-05 47.7 1.7 43 839-881 412-454 (468)
55 PF13923 zf-C3HC4_2: Zinc fing 60.4 6 0.00013 30.9 1.8 29 215-250 11-39 (39)
56 PF13240 zinc_ribbon_2: zinc-r 60.0 4.4 9.4E-05 29.2 0.9 23 332-354 1-23 (23)
57 PF00190 Cupin_1: Cupin; Inte 59.4 7.5 0.00016 38.3 2.7 38 843-880 81-125 (144)
58 smart00249 PHD PHD zinc finger 57.2 8.6 0.00019 29.6 2.2 46 203-250 1-47 (47)
59 KOG2583 Ubiquinol cytochrome c 56.3 7.5 0.00016 45.3 2.4 46 474-521 158-206 (429)
60 PF14634 zf-RING_5: zinc-RING 56.1 11 0.00023 30.4 2.6 42 204-252 2-44 (44)
61 PF00097 zf-C3HC4: Zinc finger 55.9 5.4 0.00012 31.0 0.9 41 204-250 1-41 (41)
62 PF00628 PHD: PHD-finger; Int 53.5 1.7 3.8E-05 35.4 -2.3 48 203-251 1-49 (51)
63 KOG0457 Histone acetyltransfer 53.3 5.7 0.00012 46.6 0.8 34 327-360 11-46 (438)
64 COG5432 RAD18 RING-finger-cont 53.0 7.4 0.00016 43.7 1.6 44 199-252 23-67 (391)
65 PTZ00194 60S ribosomal protein 52.9 6.6 0.00014 40.0 1.1 43 815-859 18-60 (143)
66 PF08007 Cupin_4: Cupin superf 52.5 13 0.00028 41.7 3.5 41 842-882 176-216 (319)
67 PRK15460 cpsB mannose-1-phosph 52.2 8.1 0.00018 46.0 1.9 46 838-883 420-465 (478)
68 smart00154 ZnF_AN1 AN1-like Zi 52.0 9.4 0.0002 30.7 1.7 31 204-238 1-31 (39)
69 PF02041 Auxin_BP: Auxin bindi 48.3 9.8 0.00021 39.3 1.5 41 821-866 75-115 (167)
70 smart00835 Cupin_1 Cupin. This 47.9 14 0.00031 36.4 2.6 52 815-866 47-99 (146)
71 cd02336 ZZ_RSC8 Zinc finger, Z 47.3 9.3 0.0002 31.8 1.0 34 332-365 2-36 (45)
72 KOG3899 Uncharacterized conser 47.0 7.2 0.00016 43.8 0.4 44 214-262 316-368 (381)
73 TIGR03404 bicupin_oxalic bicup 46.5 14 0.00031 42.6 2.7 81 811-897 258-343 (367)
74 TIGR00570 cdk7 CDK-activating 45.7 22 0.00048 40.4 3.9 46 201-252 3-51 (309)
75 COG5114 Histone acetyltransfer 45.4 6.4 0.00014 44.6 -0.3 31 330-360 5-37 (432)
76 COG3791 Uncharacterized conser 44.5 5.7 0.00012 39.3 -0.7 15 253-267 26-40 (133)
77 TIGR03214 ura-cupin putative a 43.8 16 0.00035 40.0 2.5 47 816-867 77-123 (260)
78 KOG1814 Predicted E3 ubiquitin 43.5 36 0.00078 40.1 5.2 37 199-236 271-313 (445)
79 PF12678 zf-rbx1: RING-H2 zinc 42.4 15 0.00032 32.9 1.6 26 219-251 48-73 (73)
80 PF01238 PMI_typeI: Phosphoman 41.7 9.2 0.0002 44.0 0.2 18 845-862 253-270 (373)
81 PRK01191 rpl24p 50S ribosomal 41.0 13 0.00028 37.0 1.1 42 815-858 17-58 (120)
82 PTZ00303 phosphatidylinositol 40.5 13 0.00029 46.4 1.3 33 201-234 460-499 (1374)
83 cd00065 FYVE FYVE domain; Zinc 40.3 14 0.00031 30.7 1.1 35 201-236 2-38 (57)
84 PF02938 GAD: GAD domain; Int 40.1 10 0.00022 35.4 0.1 41 814-864 53-93 (95)
85 PRK11171 hypothetical protein; 36.1 20 0.00044 39.4 1.8 28 839-866 98-125 (266)
86 KOG1280 Uncharacterized conser 35.1 15 0.00032 42.3 0.5 37 326-362 4-42 (381)
87 KOG2107 Uncharacterized conser 34.2 28 0.0006 36.6 2.2 56 790-862 80-136 (179)
88 PRK13264 3-hydroxyanthranilate 34.0 29 0.00064 36.6 2.4 44 840-883 74-117 (177)
89 smart00504 Ubox Modified RING 33.9 39 0.00084 28.3 2.8 42 203-253 3-44 (63)
90 PF01363 FYVE: FYVE zinc finge 33.7 12 0.00026 32.4 -0.3 37 199-236 7-45 (69)
91 COG5574 PEX10 RING-finger-cont 33.5 22 0.00048 39.6 1.5 48 199-254 213-261 (271)
92 PF10272 Tmpp129: Putative tra 33.5 36 0.00078 39.5 3.2 44 114-157 208-251 (358)
93 TIGR03037 anthran_nbaC 3-hydro 33.4 30 0.00064 36.0 2.3 45 840-884 68-112 (159)
94 PRK04023 DNA polymerase II lar 33.4 27 0.00059 45.1 2.4 23 198-222 623-645 (1121)
95 KOG3905 Dynein light intermedi 32.9 19 0.00041 41.5 0.9 24 836-859 289-313 (473)
96 KOG3799 Rab3 effector RIM1 and 32.9 12 0.00026 38.0 -0.5 55 195-252 59-115 (169)
97 PF03107 C1_2: C1 domain; Int 32.7 25 0.00054 26.5 1.2 27 332-358 2-29 (30)
98 COG5219 Uncharacterized conser 32.6 17 0.00037 46.4 0.6 33 215-252 1488-1520(1525)
99 PRK10371 DNA-binding transcrip 32.6 31 0.00068 38.1 2.5 33 837-869 59-91 (302)
100 smart00064 FYVE Protein presen 32.3 26 0.00055 30.3 1.4 37 199-236 8-46 (68)
101 PF12861 zf-Apc11: Anaphase-pr 31.9 40 0.00087 31.8 2.7 46 202-252 33-79 (85)
102 PF15446 zf-PHD-like: PHD/FYVE 30.4 53 0.0011 34.6 3.5 50 203-253 1-60 (175)
103 PRK14559 putative protein seri 29.8 30 0.00065 43.0 1.9 33 327-361 12-50 (645)
104 COG5034 TNG2 Chromatin remodel 29.5 29 0.00063 38.6 1.6 49 198-252 218-269 (271)
105 PRK14892 putative transcriptio 29.2 27 0.00059 33.6 1.2 28 326-353 17-51 (99)
106 KOG1039 Predicted E3 ubiquitin 28.6 25 0.00055 40.5 1.0 31 220-252 186-218 (344)
107 PF05899 Cupin_3: Protein of u 27.7 32 0.00069 30.7 1.3 17 843-859 45-61 (74)
108 TIGR03404 bicupin_oxalic bicup 27.6 52 0.0011 38.1 3.3 40 840-879 108-152 (367)
109 PF06844 DUF1244: Protein of u 27.4 26 0.00057 31.7 0.7 13 225-237 11-23 (68)
110 KOG4286 Dystrophin-like protei 27.3 30 0.00065 43.4 1.3 35 332-366 605-641 (966)
111 PRK12380 hydrogenase nickel in 26.9 30 0.00065 33.7 1.0 24 329-352 69-94 (113)
112 KOG1814 Predicted E3 ubiquitin 26.9 27 0.00058 41.1 0.8 119 201-365 184-313 (445)
113 KOG2177 Predicted E3 ubiquitin 26.5 35 0.00076 35.0 1.5 44 199-251 11-54 (386)
114 TIGR01080 rplX_A_E ribosomal p 26.2 36 0.00079 33.6 1.5 44 815-860 13-56 (114)
115 KOG0954 PHD finger protein [Ge 26.0 12 0.00026 46.5 -2.2 128 200-357 270-403 (893)
116 PF12852 Cupin_6: Cupin 25.9 39 0.00084 34.4 1.7 24 844-867 57-80 (186)
117 PRK11171 hypothetical protein; 25.9 39 0.00084 37.2 1.8 30 837-866 218-247 (266)
118 COG5540 RING-finger-containing 25.6 54 0.0012 37.4 2.8 49 198-252 320-369 (374)
119 PF14835 zf-RING_6: zf-RING of 25.4 37 0.00081 30.6 1.2 42 200-252 6-48 (65)
120 PF02318 FYVE_2: FYVE-type zin 24.8 12 0.00025 36.4 -2.2 54 191-250 40-100 (118)
121 KOG2164 Predicted E3 ubiquitin 24.6 36 0.00078 41.0 1.3 51 201-265 186-237 (513)
122 PF14446 Prok-RING_1: Prokaryo 24.6 31 0.00068 30.0 0.6 24 326-352 17-44 (54)
123 COG5222 Uncharacterized conser 24.1 50 0.0011 37.5 2.2 42 202-251 275-317 (427)
124 PF08990 Docking: Erythronolid 24.0 58 0.0013 24.7 1.8 17 788-804 3-19 (27)
125 PF02311 AraC_binding: AraC-li 23.1 55 0.0012 29.9 2.0 46 837-883 36-83 (136)
126 PF09567 RE_MamI: MamI restric 22.5 37 0.0008 37.8 0.8 21 332-352 84-104 (314)
127 smart00647 IBR In Between Ring 22.5 55 0.0012 27.3 1.7 32 329-360 17-56 (64)
128 KOG1729 FYVE finger containing 22.4 16 0.00035 41.1 -1.9 37 199-236 166-205 (288)
129 smart00647 IBR In Between Ring 21.9 39 0.00085 28.2 0.7 38 200-238 17-62 (64)
130 KOG0825 PHD Zn-finger protein 21.9 31 0.00068 43.4 0.1 47 204-251 102-150 (1134)
131 TIGR02297 HpaA 4-hydroxyphenyl 21.8 69 0.0015 34.4 2.7 31 837-867 57-87 (287)
132 KOG2879 Predicted E3 ubiquitin 21.5 89 0.0019 35.3 3.5 50 199-254 237-286 (298)
133 KOG1785 Tyrosine kinase negati 21.2 43 0.00092 39.4 1.0 44 201-251 369-412 (563)
134 PRK13503 transcriptional activ 20.5 50 0.0011 35.2 1.3 31 837-867 48-78 (278)
135 PRK15457 ethanolamine utilizat 20.5 56 0.0012 36.0 1.7 75 777-865 142-216 (233)
136 KOG0311 Predicted E3 ubiquitin 20.5 48 0.001 38.5 1.2 59 199-264 41-99 (381)
137 PF06249 EutQ: Ethanolamine ut 20.3 74 0.0016 32.9 2.4 21 839-859 110-130 (152)
No 1
>KOG1356 consensus Putative transcription factor 5qNCA, contains JmjC domain [Transcription]
Probab=100.00 E-value=9.1e-179 Score=1527.64 Aligned_cols=641 Identities=42% Similarity=0.706 Sum_probs=575.0
Q ss_pred hhccCCCcccccccCCCCceEecCcCCCCcccHhHHhhhCCCCChhhhhccCCCCCCcccCccccccCCCccccccc---
Q 002330 196 EKELERIKCHQCMKSERKYVVPCGKCRTKVYCIQCIKQWYPKMSELDVAEICPFCRRNCNCSVCLHTSGFIETSKIN--- 272 (935)
Q Consensus 196 ~~k~~~~~CHQCrqk~~~~~v~C~~C~r~~FC~~CL~~rY~e~~~edv~w~CP~CRgiCNCs~Clr~~g~~~t~k~e--- 272 (935)
.-++-+.+||||.+.....+-+|+.|+ ..||.+|++.||+....++++..|++|+..|||..|....++++|....
T Consensus 224 a~~g~~~mC~~C~~tlfn~hw~C~~C~-~~~Cl~C~r~~~p~~~~~e~a~k~~~~~~~C~~~q~h~~~~Lm~Tq~i~~~a 302 (889)
T KOG1356|consen 224 AVKGIREMCDRCETTLFNIHWRCPRCG-FGVCLDCYRKWYPRLSKEEVAEKCEFSWLKCNKGQCHALSELMPTQIIPGSA 302 (889)
T ss_pred cccCcchhhhhhcccccceeEEccccC-CeeeecchhhccccchHhHhhhhhhHHHHhcCCccccchhhcccccccchhh
Confidence 336888999999999888899999999 5599999999999999999999999999999999999999999998655
Q ss_pred -CChhhhHHHHH--HHHHhhhhhhHhhchHhhhhhHhhhhhcccCCCcccccccccCCCCcccccCccccccccccccCc
Q 002330 273 -MTDCEKVEHLR--YLMVSLLPFIRQICEEQTQEIEFEASIQRVHSSKVGVSETLCGNDERVYCNHCATSIIDLHRSCPK 349 (935)
Q Consensus 273 -is~~~kv~~l~--YLl~~LLP~LK~i~~EQ~~E~EiEAkIqG~~~sei~I~~a~~~~DERvyCDnCkTSI~D~HRSC~~ 349 (935)
.+..+++.++. |.|..++|+|+.++.+|..+.+.||+|||..++. +.+.+...++|++|||+|.|||.|+||+||+
T Consensus 303 l~~~~~~~h~~r~k~~I~~~cpcl~~~~~~~~~~~~~e~~vq~~~~~~-~~~~~~~~~~e~~~~~~~~~si~~l~r~cP~ 381 (889)
T KOG1356|consen 303 LLDLSDRVHAVREKFGIKAHCPCLKKQNKQQPLDAETEASVQGTEPTS-KPPVTQANPEEPLYCDHCATSIGDLKRSCPD 381 (889)
T ss_pred hhhHHHHHHHHHHHhhHHhhChhHHhhhhhccccHHHHHHHhcCCCCC-CccccccCcCCCccccccccchhhccccCCC
Confidence 66778888888 9999999999999999999999999999999988 7777777889999999999999999999999
Q ss_pred CCcccchhchHHhhcCcCCCccccceeeeccCcccccCCCCCCCccCCCCCCCCcCCCcccccCCCCCccCCCCCCCCCC
Q 002330 350 CSYELCLTCCKEICEGRLSGRAEMKFQYVNRGYGYMQGGDPLPESCLHQTPDVHVEPSVMWSADDNGTISCPPTEMGGCG 429 (935)
Q Consensus 350 CsyDLCL~CC~ELR~G~~~g~~~~~~~~~~rg~~y~~g~~~~~~~~~~~~~~~~~~~~~~W~a~~dGSI~CpPke~ggCg 429 (935)
|+|++||.||++||+|.+.-..+..+.|.+||..|.||.++...+-....... +.+ ++++|+|.|-|...+||+
T Consensus 382 ~s~~~~l~~~~~i~~g~l~~~~e~~~~~~~r~~~~~~g~~~~~~~~~s~~~~~---~~~---~~~ng~~r~l~~~~~g~~ 455 (889)
T KOG1356|consen 382 SSYAICLPWLADLRRGDLKEKEECELMLRSRGVKYEHGPDPIEPSLSSVSVDE---PSS---ANENGSLRDLLLSLAGCL 455 (889)
T ss_pred ccccccchHHHHhhcCCcccchhHHHHHHHHHHHhhcCccccccccCCCCCCC---Ccc---cccccchhhcccccCccc
Confidence 99999999999999998877766688899999999999877543222111111 111 888999999999999999
Q ss_pred CcceeccccCccchHHHHHHHHHHHHHHhcccccccccC-ccccCcccchhccccCCCCCCceecCCCCCcCchhhHHHH
Q 002330 430 DCVLELTRILPDRWISDLEKEARDLVLILDNKLTNLRQN-RAETGTDMLCKAASREGSDDNLLYCPDSTKIQEDEELFRF 508 (935)
Q Consensus 430 ~~~L~Lr~ifp~~~is~L~~~aee~~~~~~~~~~~~~~c-s~~~~~~~lrkaA~Re~s~dN~LYcP~~~di~~~~~l~hF 508 (935)
...|.|+|++|..|.+.|+..||.-+..+-+.... .-| +...+.+.++++|.|+.+.|||||||.+ |..+++||.||
T Consensus 456 ~~~l~lkr~lpn~~~s~i~~~vE~k~~~~~~~~~l-~~~~~~~~~~~~~~s~~~~~~~cdn~Ll~l~~-d~~~~~n~~~F 533 (889)
T KOG1356|consen 456 DRGLKLKRILPNILDSIIASVVENKLTSKLSKPPL-RLCRSSQDGSGLLLSAASHSWLCDNRLLSLKV-DPLNQNNLKHF 533 (889)
T ss_pred hhhhhhhhcCchHHHHHHHHHHHhhcccccCCchh-hcCccccccccCccccCCCCcCCCCceecCcc-CccchhHHHHH
Confidence 99999999999999999999999888775544332 233 2234567788999999999999999999 54445999999
Q ss_pred HHHhhcCCCEEEEccccccCCCCCChhHHHHHHhhhccccccccCCceeEeecCCCceeecchhhhhccccCCccCCCCc
Q 002330 509 QKHWIKGEPVIVRNVLDKVTGLSWEPMVMWRALCENVDSEVSSKMSEVKAIDCLASCEVEISTRQFFKGYTQGRTYDNFW 588 (935)
Q Consensus 509 Q~hW~kGePVIVr~Vl~~~s~lsW~P~~mwra~~e~~~~~~~d~~~~vkaiDCld~~eVei~i~qFf~Gy~~gr~~~~~w 588 (935)
|+||++|||||||||++++++++|+||+|||+|++..+.-..-.+.++.++||++ ++.+||.||++|+++++||
T Consensus 534 QEhWkqGqPViVs~V~~~l~g~lW~P~a~~~~~g~q~~~l~n~~~~~i~s~d~~~------~fwegFe~~~kr~~~~~g~ 607 (889)
T KOG1356|consen 534 QEHWKQGQPVIVSGVHKKLNGLLWKPEALSRAFGDQVVDLSNCNNSQIISNDCVD------NFWEGFEGYSKRLKSENGW 607 (889)
T ss_pred HHHHhcCCcEEehHhhhhccccccchHHHHHHhccchhhhhcCCCCCccccchhh------hHHHhhcccccCcccccCC
Confidence 9999999999999999999999999999999999987766666677788888887 7899999999999999999
Q ss_pred cceeecCCCCCCCchhhhcccchHHHHhCCCCcCcCCCCCccccccccCCCCCCCCCCCcchhhccccccccCCCCCccc
Q 002330 589 PEMLKLKDWPPSDKFEDLMPRHCDEFISALPFQEYSDPRAGILNLAVKLPSGVLKPDLGPKTYIAYGVAEELGRGDSVTK 668 (935)
Q Consensus 589 p~mLKLKDWPps~~F~e~lP~h~~eFi~aLP~~EYT~pr~G~LNLAakLP~~~lkPDLGPK~YIAYG~~eelGrGDSvTk 668 (935)
|+|||||||||+++|+++||+||+|||++|||||||| +.|+||||++||.+|++||||||||||||+++++||||||||
T Consensus 608 p~vLKLKDWpp~~~Fkd~lP~r~eell~sLPlpEYt~-r~G~LNlAs~LP~~fv~PDLGPk~y~AYG~~~e~gr~~gtTn 686 (889)
T KOG1356|consen 608 PEVLKLKDWPPGEDFKDMLPRRFEELLASLPLPEYTD-RDGKLNLASKLPEGFVRPDLGPKLYNAYGVSTELGRGDGTTN 686 (889)
T ss_pred eeEEeecCCCchHhHhhhhhHHHHHHHHcCCchhhhc-CCCccchHhhCcccccCCCCCchhhhhccccccccCCCCcee
Confidence 9999999999999999999999999999999999999 889999999999999999999999999999999999999999
Q ss_pred ccccccccchhhhcccccccchHhHHHHHHHHHHHHhhhhhhhhccCCCCccccCCCCCCCCCCCCcccccccccCCCCc
Q 002330 669 LHCDMSDAVNILTHTEEVLLTEEQHSAVERLKKEHRAQDLKENLVQDGMDESIEEPNSDNNKEDTDVSEINDSELLPSGI 748 (935)
Q Consensus 669 LH~DmSDAVNIL~htaev~~~~~q~~~i~kl~~k~~~q~~~e~~~~~~~~~~~~e~~~~~~~~~~d~~~i~~~~~~~~~~ 748 (935)
|||||||||||||||++++. +...|+++++++.+++..|+.. ++
T Consensus 687 LH~dvSDaVNILvyv~e~~~---~~~~~~~~~k~~~~~~~de~~~---------------------------~~------ 730 (889)
T KOG1356|consen 687 LHLDVSDAVNILVYVGEPPG---QIEQIAKVLKKIQEGDLDEITR---------------------------SR------ 730 (889)
T ss_pred eceehhhhhhheeeeccCCc---hHHhHHHHHHhhhhcchhhhhh---------------------------hh------
Confidence 99999999999999998876 4555666666665443322210 00
Q ss_pred ccccccccccccCCccccCCCCCCccCCCceEEEeecCCChhHHHHHHHHHHHhhccccCCCCCcccCCcccCccccCHH
Q 002330 749 RGEFKMSRDEMQGTAFTCPHSEGTMVESGGALWDIFRRQDVPKLEAYLRKHFKEFRHVYCSPVEQVIHPIHDQCFYLSSE 828 (935)
Q Consensus 749 ~~~~k~~~~~~~g~~~~~~~~~~~~~~~~GAlWDIFRreDvpKLreyL~kh~~Ef~h~~~~pv~~v~dPIHDQ~fYLt~e 828 (935)
+. +..+.+|||||||||||||||||||+||++||+| ++.+|+||||||+||||.+
T Consensus 731 -----~~----------------~~~e~~GALWhIF~~~Dv~KireyL~k~~~E~~~----~~~~v~hPIhDQS~YLd~~ 785 (889)
T KOG1356|consen 731 -----IS----------------SVSETPGALWHIFRAQDVPKIREYLRKVCKEQGH----EVPKVHHPIHDQSWYLDRY 785 (889)
T ss_pred -----cc----------------ccccCCcchhhhhhhcchHHHHHHHHHhhHHhcC----CCCcccCCCcccceeccHH
Confidence 00 0136899999999999999999999999999998 7899999999999999999
Q ss_pred HHHHHHHHhCccceEEEeecCceeEecCCCccccccccccceecccccCccchHHHHHHHHHhhcCCcccccccchhhhh
Q 002330 829 HKKKLKEEFGVEPWTFEQKLGEAVFIPAGCPHQVRNLKSCTKVAVDFVSPENVDECLRLTKEFRLLPKNHRAREDKLEVY 908 (935)
Q Consensus 829 hk~rLkEEyGVepWtf~Q~lGEAVFIPAGCPHQVRNLkSCIKVAlDFVSPEnV~eC~rLteEfR~Lp~~H~akEDKLeVk 908 (935)
||+|||||||||||||+|+||||||||||||||||||+||||||+||||||||.||++||+|||+||++|.|||||||||
T Consensus 786 lr~RLkeEyGVe~WtfvQ~LGdAVfIPAGaPHQVrNLkSCikVa~DFVSPE~v~ec~rLT~EfR~Lp~~h~~~eDKLqvK 865 (889)
T KOG1356|consen 786 LRRRLKEEYGVEPWTFVQFLGDAVFIPAGAPHQVRNLKSCIKVAEDFVSPEHVSECFRLTQEFRQLPQNHKNHEDKLQVK 865 (889)
T ss_pred HHHHHHHHhCCCccchhhcccceEEecCCCcHHhhhhhhHHHHHHhhCChhhHHHHHHHHHHHhhCCCcccchHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred heehhh
Q 002330 909 LVFIKR 914 (935)
Q Consensus 909 km~l~~ 914 (935)
||+||+
T Consensus 866 ~mi~hA 871 (889)
T KOG1356|consen 866 NMIYHA 871 (889)
T ss_pred HHHHHH
Confidence 999999
No 2
>PF10497 zf-4CXXC_R1: Zinc-finger domain of monoamine-oxidase A repressor R1; InterPro: IPR018866 R1 is a transcription factor repressor that inhibits monoamine oxidase A gene expression. This domain is a four-CXXC zinc finger putative DNA-binding domain found at the C-terminal end of R1. The domain carries 12 cysteines of which four pairs are of the CXXC type [].
Probab=99.82 E-value=3.3e-21 Score=180.68 Aligned_cols=75 Identities=31% Similarity=0.706 Sum_probs=67.3
Q ss_pred hhccCCCcccccccCCCCceEec------CcCC--CCcccHhHHhhhCCCCChh---hhhccCCCCCCcccCccccccCC
Q 002330 196 EKELERIKCHQCMKSERKYVVPC------GKCR--TKVYCIQCIKQWYPKMSEL---DVAEICPFCRRNCNCSVCLHTSG 264 (935)
Q Consensus 196 ~~k~~~~~CHQCrqk~~~~~v~C------~~C~--r~~FC~~CL~~rY~e~~~e---dv~w~CP~CRgiCNCs~Clr~~g 264 (935)
++...|.+|||||||+.+.++.| ++|. ++.||++||.+||+++++| +..|.||+|||+|||++|++++|
T Consensus 2 yd~~~g~~CHqCrqKt~~~~~~C~~~~~~~~C~~~~~~fC~~CL~~ryge~~~ev~~~~~W~CP~CrgiCnCs~Crrk~g 81 (105)
T PF10497_consen 2 YDSVNGKTCHQCRQKTLDFKTICTGHWKNSSCRGCRGKFCGGCLRNRYGENVEEVLEDPNWKCPKCRGICNCSFCRRKRG 81 (105)
T ss_pred ccCCCCCCchhhcCCCCCCceEcCCCCCCCCCccCcceehHhHHHHHHhhhHHHHhcCCceECCCCCCeeCCHhhhccCC
Confidence 45788999999999999999999 6782 2899999999999998765 45799999999999999999999
Q ss_pred Cccccc
Q 002330 265 FIETSK 270 (935)
Q Consensus 265 ~~~t~k 270 (935)
+.||+.
T Consensus 82 ~~PTg~ 87 (105)
T PF10497_consen 82 WAPTGI 87 (105)
T ss_pred CCCcHH
Confidence 999984
No 3
>PF02373 JmjC: JmjC domain, hydroxylase; InterPro: IPR013129 Jumonji protein is required for neural tube formation in mice [].There is evidence of domain swapping within the jumonji family of transcription factors []. This domain is often associated with jmjN (see IPR003349 from INTERPRO) and belongs to the Cupin superfamily [].; PDB: 2YU2_A 2YU1_A 3AVR_A 3AVS_A 2OX0_B 2OQ6_B 2WWJ_A 2Q8D_A 3PDQ_A 2YBK_A ....
Probab=99.49 E-value=2.7e-14 Score=131.18 Aligned_cols=86 Identities=33% Similarity=0.447 Sum_probs=64.3
Q ss_pred CCceEEEeecCCChhHHHHHHHHHHHhhccccCCCCCcccCCcccCccccCHHHHHHHHHHhCccceEEEeecCceeEec
Q 002330 776 SGGALWDIFRRQDVPKLEAYLRKHFKEFRHVYCSPVEQVIHPIHDQCFYLSSEHKKKLKEEFGVEPWTFEQKLGEAVFIP 855 (935)
Q Consensus 776 ~~GAlWDIFRreDvpKLreyL~kh~~Ef~h~~~~pv~~v~dPIHDQ~fYLt~ehk~rLkEEyGVepWtf~Q~lGEAVFIP 855 (935)
.+..+|-+++++|.++++++++++... .+|+| +..+.+.-.+.. ..+.||+.|+|+|++||+||||
T Consensus 29 g~~k~W~~v~~~~~~~~~~~~~~~~~~------------~~~~~-~~~~~~~~~p~~-l~~~gi~~~~~~Q~~Ge~V~i~ 94 (114)
T PF02373_consen 29 GGSKVWYIVPPEDADKFEKFLRSKESQ------------NCPQF-LDHKNIFVSPEQ-LKKAGIPVYRFVQKPGEFVFIP 94 (114)
T ss_dssp ESEEEEEEE-GGGHHHHHHHHHHHHHH------------HSTTG-GCTGGEEEGHHH-HHHTTS--EEEEEETT-EEEE-
T ss_pred CcceEeEEechhhhhhHHHHHhhcccc------------ccccc-ccccccccceee-eeccCcccccceECCCCEEEEC
Confidence 357899999999999999999987221 34444 444443333333 6779999999999999999999
Q ss_pred CCCccccccccccceecccc
Q 002330 856 AGCPHQVRNLKSCTKVAVDF 875 (935)
Q Consensus 856 AGCPHQVRNLkSCIKVAlDF 875 (935)
+|++|||.|+-.||++|.+|
T Consensus 95 pg~~H~v~n~g~~i~~a~Nf 114 (114)
T PF02373_consen 95 PGAYHQVFNLGDNISEAVNF 114 (114)
T ss_dssp TT-EEEEEESSSEEEEEEEE
T ss_pred CCceEEEEeCCceEEEEecC
Confidence 99999999999999999988
No 4
>PF13621 Cupin_8: Cupin-like domain; PDB: 3AL6_C 3AL5_C 2XUM_A 2Y0I_A 1MZE_A 3KCY_A 1MZF_A 1YCI_A 2ILM_A 1H2L_A ....
Probab=98.94 E-value=2.3e-10 Score=117.24 Aligned_cols=40 Identities=35% Similarity=0.544 Sum_probs=33.2
Q ss_pred cceEEEeecCceeEecCCCccccccc--cc-cceecccccCcc
Q 002330 840 EPWTFEQKLGEAVFIPAGCPHQVRNL--KS-CTKVAVDFVSPE 879 (935)
Q Consensus 840 epWtf~Q~lGEAVFIPAGCPHQVRNL--kS-CIKVAlDFVSPE 879 (935)
.+|++++.+||++|||+|-.|||+|| .. ||.|...|.+|.
T Consensus 207 ~~~~~~l~pGD~LfiP~gWwH~V~~~~~~~~sisvn~w~~~~~ 249 (251)
T PF13621_consen 207 PPYEVVLEPGDVLFIPPGWWHQVENLSDDDLSISVNYWFRTPF 249 (251)
T ss_dssp -EEEEEEETT-EEEE-TT-EEEEEESTTSSCEEEEEEEEESS-
T ss_pred ceeEEEECCCeEEEECCCCeEEEEEcCCCCeEEEEEEEecccc
Confidence 89999999999999999999999999 76 999999998764
No 5
>smart00558 JmjC A domain family that is part of the cupin metalloenzyme superfamily. Probable enzymes, but of unknown functions, that regulate chromatin reorganisation processes (Clissold and Ponting, in press).
Probab=96.70 E-value=0.00064 Score=56.81 Aligned_cols=54 Identities=41% Similarity=0.632 Sum_probs=43.0
Q ss_pred HHHhCCCCcCcCCCCCccccccccCCCCCCCCCCCcchhhccccccccCCCCCcccccccccccchhhhccc
Q 002330 613 EFISALPFQEYSDPRAGILNLAVKLPSGVLKPDLGPKTYIAYGVAEELGRGDSVTKLHCDMSDAVNILTHTE 684 (935)
Q Consensus 613 eFi~aLP~~EYT~pr~G~LNLAakLP~~~lkPDLGPK~YIAYG~~eelGrGDSvTkLH~DmSDAVNIL~hta 684 (935)
..+..||+ .+||+.+++.....|+. +|+.+|. .+|+|.+|+|..|.+|++.+.+
T Consensus 3 ~~l~~lP~---------~~~ll~~~~~~~~~~~~---~~~~~G~------~~s~t~~H~d~~~~~n~~~~~~ 56 (57)
T smart00558 3 NNLAKLPF---------KLNLLSDLPEDILGPDV---PYLYMGM------AGSVTPWHIDDYDLVNYLHQGA 56 (57)
T ss_pred chhhhCCC---------cchHHHHCCcccCCCCc---ceEEEeC------CCCccceeEcCCCeEEEEEecC
Confidence 34567776 68999999988888877 6666664 4789999999999999887653
No 6
>KOG1356 consensus Putative transcription factor 5qNCA, contains JmjC domain [Transcription]
Probab=95.95 E-value=0.015 Score=71.05 Aligned_cols=77 Identities=26% Similarity=0.628 Sum_probs=50.6
Q ss_pred hHHHHHHHHHhhhhhhHhhchHhhhhhHhhhhhcccCC-CcccccccccCCCCcccccCccccccccccccCcCCcccch
Q 002330 278 KVEHLRYLMVSLLPFIRQICEEQTQEIEFEASIQRVHS-SKVGVSETLCGNDERVYCNHCATSIIDLHRSCPKCSYELCL 356 (935)
Q Consensus 278 kv~~l~YLl~~LLP~LK~i~~EQ~~E~EiEAkIqG~~~-sei~I~~a~~~~DERvyCDnCkTSI~D~HRSC~~CsyDLCL 356 (935)
.++.+.|++..+- -++.+.=+.|.|.-+ ++.+ -.+....+ ....|-.||.|.|++|++|+.|++|++.+||
T Consensus 184 ~~e~~k~il~~~g---d~~c~~~~se~eAl~---~~~~~~~~a~k~a--~~g~~~mC~~C~~tlfn~hw~C~~C~~~~Cl 255 (889)
T KOG1356|consen 184 DTETAKYILANLG---DQFCQLVRSEKEALS---MQRPDQKVAWKRA--VKGIREMCDRCETTLFNIHWRCPRCGFGVCL 255 (889)
T ss_pred chHHHHHHhhhcc---chhhhhhhccchhhc---ccCcccccchhhc--ccCcchhhhhhcccccceeEEccccCCeeee
Confidence 4566777664432 234555455544433 1111 11222222 4667889999999999999999999999999
Q ss_pred hchHHh
Q 002330 357 TCCKEI 362 (935)
Q Consensus 357 ~CC~EL 362 (935)
.|.+.-
T Consensus 256 ~C~r~~ 261 (889)
T KOG1356|consen 256 DCYRKW 261 (889)
T ss_pred cchhhc
Confidence 998765
No 7
>KOG2131 consensus Uncharacterized conserved protein, contains JmjC domain [Chromatin structure and dynamics; Signal transduction mechanisms]
Probab=95.82 E-value=0.0086 Score=67.58 Aligned_cols=60 Identities=27% Similarity=0.394 Sum_probs=49.1
Q ss_pred HhCccceEEEeecCceeEecCCCccccccccccceecccccCccchHHHHH-HHHHhhcCC
Q 002330 836 EFGVEPWTFEQKLGEAVFIPAGCPHQVRNLKSCTKVAVDFVSPENVDECLR-LTKEFRLLP 895 (935)
Q Consensus 836 EyGVepWtf~Q~lGEAVFIPAGCPHQVRNLkSCIKVAlDFVSPEnV~eC~r-LteEfR~Lp 895 (935)
++.+.+.++-|.+||+||+|.|==|||-||-..|.|--.++--=|+..=.+ |-+++-.++
T Consensus 262 ~~~~~~lei~Qepge~VFvPsGW~hQV~NL~dTISINHNW~N~~nl~~~w~~Lk~~y~a~~ 322 (427)
T KOG2131|consen 262 LFRGPLLEIFQEPGETVFVPSGWHHQVLNLGDTISINHNWCNATNLAWMWDALKEDYPALA 322 (427)
T ss_pred ccccchhhhhccCCceeeccCccccccccccceeeecccccccccHHHHHHHHHhhhhhhh
Confidence 345667899999999999999999999999999999999998888876655 344444443
No 8
>cd02340 ZZ_NBR1_like Zinc finger, ZZ type. Zinc finger present in Drosophila ref(2)P, NBR1, Human sequestosome 1 and related proteins. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding. Drosophila ref(2)P appears to control the multiplication of sigma rhabdovirus. NBR1 (Next to BRCA1 gene 1 protein) interacts with fasciculation and elongation protein zeta-1 (FEZ1) and calcium and integrin binding protein (CIB), and may function in cell signalling pathways. Sequestosome 1 is a phosphotyrosine independent ligand for the Lck SH2 domain and binds noncovalently to ubiquitin via its UBA domain.
Probab=95.39 E-value=0.0074 Score=49.04 Aligned_cols=31 Identities=32% Similarity=0.935 Sum_probs=28.8
Q ss_pred ccccCccccccccccccCcC-CcccchhchHH
Q 002330 331 VYCNHCATSIIDLHRSCPKC-SYELCLTCCKE 361 (935)
Q Consensus 331 vyCDnCkTSI~D~HRSC~~C-syDLCL~CC~E 361 (935)
+.||.|+++|..+...|..| .||||..|...
T Consensus 1 v~Cd~C~~~i~G~ry~C~~C~d~dLC~~C~~~ 32 (43)
T cd02340 1 VICDGCQGPIVGVRYKCLVCPDYDLCESCEAK 32 (43)
T ss_pred CCCCCCCCcCcCCeEECCCCCCccchHHhhCc
Confidence 57999999999999999999 79999999874
No 9
>cd02249 ZZ Zinc finger, ZZ type. Zinc finger present in dystrophin, CBP/p300 and many other proteins. The ZZ motif coordinates one or two zinc ions and most likely participates in ligand binding or molecular scaffolding. Many proteins containing ZZ motifs have other zinc-binding motifs as well, and the majority serve as scaffolds in pathways involving acetyltransferase, protein kinase, or ubiqitin-related activity. ZZ proteins can be grouped into the following functional classes: chromatin modifying, cytoskeletal scaffolding, ubiquitin binding or conjugating, and membrane receptor or ion-channel modifying proteins.
Probab=94.74 E-value=0.013 Score=47.81 Aligned_cols=32 Identities=25% Similarity=0.783 Sum_probs=29.7
Q ss_pred cccCccccccccccccCcCC-cccchhchHHhh
Q 002330 332 YCNHCATSIIDLHRSCPKCS-YELCLTCCKEIC 363 (935)
Q Consensus 332 yCDnCkTSI~D~HRSC~~Cs-yDLCL~CC~ELR 363 (935)
.||.|..+|...+..|..|. ||||..|..+-.
T Consensus 2 ~C~~C~~~i~g~r~~C~~C~d~dLC~~Cf~~~~ 34 (46)
T cd02249 2 SCDGCLKPIVGVRYHCLVCEDFDLCSSCYAKGK 34 (46)
T ss_pred CCcCCCCCCcCCEEECCCCCCCcCHHHHHCcCc
Confidence 59999999999999999999 999999998654
No 10
>cd02335 ZZ_ADA2 Zinc finger, ZZ type. Zinc finger present in ADA2, a putative transcriptional adaptor, and related proteins. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding.
Probab=94.55 E-value=0.016 Score=48.03 Aligned_cols=32 Identities=28% Similarity=0.896 Sum_probs=29.1
Q ss_pred cccCccccccc-cccccCcC-CcccchhchHHhh
Q 002330 332 YCNHCATSIID-LHRSCPKC-SYELCLTCCKEIC 363 (935)
Q Consensus 332 yCDnCkTSI~D-~HRSC~~C-syDLCL~CC~ELR 363 (935)
.||+|...|.. ++-.|..| .||||+.|...-.
T Consensus 2 ~Cd~C~~~~~~g~r~~C~~C~d~dLC~~Cf~~g~ 35 (49)
T cd02335 2 HCDYCSKDITGTIRIKCAECPDFDLCLECFSAGA 35 (49)
T ss_pred CCCCcCCCCCCCcEEECCCCCCcchhHHhhhCcC
Confidence 59999999999 99999999 9999999998543
No 11
>cd02339 ZZ_Mind_bomb Zinc finger, ZZ type. Zinc finger present in Drosophila Mind bomb (D-mib) and related proteins. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding. Mind bomb is an E3 ubiqitin ligase that has been shown to regulate signaling by the Notch ligand Delta in Drosophila melanogaster.
Probab=94.05 E-value=0.026 Score=46.51 Aligned_cols=30 Identities=37% Similarity=1.124 Sum_probs=28.0
Q ss_pred ccccCcc-ccccccccccCcC-CcccchhchH
Q 002330 331 VYCNHCA-TSIIDLHRSCPKC-SYELCLTCCK 360 (935)
Q Consensus 331 vyCDnCk-TSI~D~HRSC~~C-syDLCL~CC~ 360 (935)
+.||.|+ .+|.-....|..| .||||..|..
T Consensus 1 i~Cd~C~~~~i~G~RykC~~C~dyDLC~~C~~ 32 (45)
T cd02339 1 IICDTCRKQGIIGIRWKCAECPNYDLCTTCYH 32 (45)
T ss_pred CCCCCCCCCCcccCeEECCCCCCccchHHHhC
Confidence 5799999 7899999999999 7999999998
No 12
>PF00569 ZZ: Zinc finger, ZZ type; InterPro: IPR000433 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents ZZ-type zinc finger domains, named because of their ability to bind two zinc ions []. These domains contain 4-6 Cys residues that participate in zinc binding (plus additional Ser/His residues), including a Cys-X2-Cys motif found in other zinc finger domains. These zinc fingers are thought to be involved in protein-protein interactions. The structure of the ZZ domain shows that it belongs to the family of cross-brace zinc finger motifs that include the PHD, RING, and FYVE domains []. ZZ-type zinc finger domains are found in: Transcription factors P300 and CBP. Plant proteins involved in light responses, such as Hrb1. E3 ubiquitin ligases MEX and MIB2 (6.3.2 from EC). Dystrophin and its homologues. Single copies of the ZZ zinc finger occur in the transcriptional adaptor/coactivator proteins P300, in cAMP response element-binding protein (CREB)-binding protein (CBP) and ADA2. CBP provides several binding sites for transcriptional coactivators. The site of interaction with the tumour suppressor protein p53 and the oncoprotein E1A with CBP/P300 is a Cys-rich region that incorporates two zinc-binding motifs: ZZ-type and TAZ2-type. The ZZ-type zinc finger of CBP contains two twisted anti-parallel beta-sheets and a short alpha-helix, and binds two zinc ions []. One zinc ion is coordinated by four cysteine residues via 2 Cys-X2-Cys motifs, and the third zinc ion via a third Cys-X-Cys motif and a His-X-His motif. The first zinc cluster is strictly conserved, whereas the second zinc cluster displays variability in the position of the two His residues. In Arabidopsis thaliana (Mouse-ear cress), the hypersensitive to red and blue 1 (Hrb1) protein, which regulating both red and blue light responses, contains a ZZ-type zinc finger domain []. ZZ-type zinc finger domains have also been identified in the testis-specific E3 ubiquitin ligase MEX that promotes death receptor-induced apoptosis []. MEX has four putative zinc finger domains: one ZZ-type, one SWIM-type and two RING-type. The region containing the ZZ-type and RING-type zinc fingers is required for interaction with UbcH5a and MEX self-association, whereas the SWIM domain was critical for MEX ubiquitination. In addition, the Cys-rich domains of dystrophin, utrophin and an 87kDa post-synaptic protein contain a ZZ-type zinc finger with high sequence identity to P300/CBP ZZ-type zinc fingers. In dystrophin and utrophin, the ZZ-type zinc finger lies between a WW domain (flanked by and EF hand) and the C-terminal coiled-coil domain. Dystrophin is thought to act as a link between the actin cytoskeleton and the extracellular matrix, and perturbations of the dystrophin-associated complex, for example, between dystrophin and the transmembrane glycoprotein beta-dystroglycan, may lead to muscular dystrophy. Dystrophin and its autosomal homologue utrophin interact with beta-dystroglycan via their C-terminal regions, which are comprised of a WW domain, an EF hand domain and a ZZ-type zinc finger domain []. The WW domain is the primary site of interaction between dystrophin or utrophin and dystroglycan, while the EF hand and ZZ-type zinc finger domains stabilise and strengthen this interaction. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 1TOT_A 2DIP_A 2FC7_A 2E5R_A.
Probab=93.69 E-value=0.035 Score=45.49 Aligned_cols=36 Identities=31% Similarity=0.744 Sum_probs=27.8
Q ss_pred CcccccCccc-cccccccccCcCC-cccchhchHHhhc
Q 002330 329 ERVYCNHCAT-SIIDLHRSCPKCS-YELCLTCCKEICE 364 (935)
Q Consensus 329 ERvyCDnCkT-SI~D~HRSC~~Cs-yDLCL~CC~ELR~ 364 (935)
..+.||.|++ +|.-....|..|. ||||..|..+-+.
T Consensus 3 ~~~~C~~C~~~~i~g~Ry~C~~C~d~dLC~~C~~~g~~ 40 (46)
T PF00569_consen 3 HGYTCDGCGTDPIIGVRYHCLVCPDYDLCEDCFSKGRH 40 (46)
T ss_dssp SSCE-SSS-SSSEESSEEEESSSSS-EEEHHHHHH--H
T ss_pred CCeECcCCCCCcCcCCeEECCCCCCCchhhHHHhCcCC
Confidence 3578999999 9999999999998 9999999987543
No 13
>smart00291 ZnF_ZZ Zinc-binding domain, present in Dystrophin, CREB-binding protein. Putative zinc-binding domain present in dystrophin-like proteins, and CREB-binding protein/p300 homologues. The ZZ in dystrophin appears to bind calmodulin. A missense mutation of one of the conserved cysteines in dystrophin results in a patient with Duchenne muscular dystrophy [3].
Probab=93.41 E-value=0.039 Score=44.77 Aligned_cols=36 Identities=28% Similarity=0.827 Sum_probs=31.8
Q ss_pred cccccCccccccccccccCcC-CcccchhchHHhhcC
Q 002330 330 RVYCNHCATSIIDLHRSCPKC-SYELCLTCCKEICEG 365 (935)
Q Consensus 330 RvyCDnCkTSI~D~HRSC~~C-syDLCL~CC~ELR~G 365 (935)
.+.||.|...|......|..| .||||..|..+-+.+
T Consensus 4 ~~~C~~C~~~i~g~ry~C~~C~d~dlC~~Cf~~~~~~ 40 (44)
T smart00291 4 SYSCDTCGKPIVGVRYHCLVCPDYDLCQSCFAKGSAG 40 (44)
T ss_pred CcCCCCCCCCCcCCEEECCCCCCccchHHHHhCcCcC
Confidence 457999999999999999999 899999999876544
No 14
>PF07883 Cupin_2: Cupin domain; InterPro: IPR013096 This family represents the conserved barrel domain of the cupin superfamily [] (cupa is the Latin term for a small barrel). ; PDB: 2OPK_C 3BU7_B 2PHD_D 3NVC_A 3NKT_A 3NJZ_A 3NW4_A 3NST_A 3NL1_A 2H0V_A ....
Probab=92.19 E-value=0.062 Score=45.45 Aligned_cols=26 Identities=50% Similarity=0.814 Sum_probs=22.3
Q ss_pred EEEeecCceeEecCCCcccccccccc
Q 002330 843 TFEQKLGEAVFIPAGCPHQVRNLKSC 868 (935)
Q Consensus 843 tf~Q~lGEAVFIPAGCPHQVRNLkSC 868 (935)
++.=..||+++||||++|+++|..+-
T Consensus 38 ~~~l~~Gd~~~i~~~~~H~~~n~~~~ 63 (71)
T PF07883_consen 38 RVELKPGDAIYIPPGVPHQVRNPGDE 63 (71)
T ss_dssp EEEEETTEEEEEETTSEEEEEEESSS
T ss_pred EeEccCCEEEEECCCCeEEEEECCCC
Confidence 55557899999999999999998754
No 15
>cd02344 ZZ_HERC2 Zinc finger, ZZ type. Zinc finger present in HERC2 and related proteins. HERC2 is a potential E3 ubiquitin protein ligase and/or guanine nucleotide exchange factor. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding.
Probab=92.06 E-value=0.077 Score=43.89 Aligned_cols=31 Identities=29% Similarity=0.834 Sum_probs=28.3
Q ss_pred ccccCccc-cccccccccCcCC-cccchhchHH
Q 002330 331 VYCNHCAT-SIIDLHRSCPKCS-YELCLTCCKE 361 (935)
Q Consensus 331 vyCDnCkT-SI~D~HRSC~~Cs-yDLCL~CC~E 361 (935)
|.||.|.+ +|+-....|..|. ||||..|...
T Consensus 1 V~Cd~C~~~pI~G~RykC~~C~dyDLC~~Cf~~ 33 (45)
T cd02344 1 VTCDGCQMFPINGPRFKCRNCDDFDFCENCFKT 33 (45)
T ss_pred CCCCCCCCCCCccCeEECCCCCCccchHHhhCC
Confidence 57999985 8999999999998 9999999976
No 16
>COG1917 Uncharacterized conserved protein, contains double-stranded beta-helix domain [Function unknown]
Probab=91.98 E-value=0.067 Score=51.45 Aligned_cols=57 Identities=23% Similarity=0.367 Sum_probs=45.4
Q ss_pred CcccCCcccCccccCHHHHHHHHHHhCccceEEEeecCceeEecCCCcccccccccc--ceecc
Q 002330 812 EQVIHPIHDQCFYLSSEHKKKLKEEFGVEPWTFEQKLGEAVFIPAGCPHQVRNLKSC--TKVAV 873 (935)
Q Consensus 812 ~~v~dPIHDQ~fYLt~ehk~rLkEEyGVepWtf~Q~lGEAVFIPAGCPHQVRNLkSC--IKVAl 873 (935)
....||-++|.+|..+-.-. |.++.=+++=+.||.|+||||.+|-+.|..+. +.+++
T Consensus 57 ~~H~hp~~~~~~~Vl~G~~~-----~~~~g~~~~l~~Gd~i~ip~g~~H~~~a~~~~~~~~l~v 115 (131)
T COG1917 57 PWHTHPLGEQTIYVLEGEGT-----VQLEGEKKELKAGDVIIIPPGVVHGLKAVEDEPMVLLLV 115 (131)
T ss_pred ccccCCCcceEEEEEecEEE-----EEecCCceEecCCCEEEECCCCeeeeccCCCCceeEEEE
Confidence 45689989999998876543 55556666678999999999999999999999 55543
No 17
>KOG2130 consensus Phosphatidylserine-specific receptor PtdSerR, contains JmjC domain [Chromatin structure and dynamics; Signal transduction mechanisms]
Probab=91.22 E-value=0.13 Score=57.58 Aligned_cols=43 Identities=37% Similarity=0.560 Sum_probs=40.3
Q ss_pred cceEEEeecCceeEecCCCccccccccccceecccccCccchH
Q 002330 840 EPWTFEQKLGEAVFIPAGCPHQVRNLKSCTKVAVDFVSPENVD 882 (935)
Q Consensus 840 epWtf~Q~lGEAVFIPAGCPHQVRNLkSCIKVAlDFVSPEnV~ 882 (935)
+|-...|.+||.||||.|==|=|-||--.|-|+..|+|=||.+
T Consensus 261 kPIEc~q~pGEt~fVP~GWWHvVlNle~TIAiTqNf~s~eNf~ 303 (407)
T KOG2130|consen 261 KPIECLQKPGETMFVPSGWWHVVLNLEPTIAITQNFASKENFP 303 (407)
T ss_pred CCceeeecCCceEEecCCeEEEEeccCceeeeeeccccccCCc
Confidence 4667899999999999999999999999999999999999964
No 18
>cd02341 ZZ_ZZZ3 Zinc finger, ZZ type. Zinc finger present in ZZZ3 (ZZ finger containing 3) and related proteins. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding.
Probab=91.21 E-value=0.11 Score=43.48 Aligned_cols=32 Identities=25% Similarity=0.753 Sum_probs=29.1
Q ss_pred cccCccc-cccccccccCcCC---cccchhchHHhh
Q 002330 332 YCNHCAT-SIIDLHRSCPKCS---YELCLTCCKEIC 363 (935)
Q Consensus 332 yCDnCkT-SI~D~HRSC~~Cs---yDLCL~CC~ELR 363 (935)
-||+|.. +|.-+...|..|. ||||..|...-.
T Consensus 2 ~Cd~C~~~pI~G~R~~C~~C~~~d~DlC~~C~~~~~ 37 (48)
T cd02341 2 KCDSCGIEPIPGTRYHCSECDDGDFDLCQDCVVKGE 37 (48)
T ss_pred CCCCCCCCccccceEECCCCCCCCCccCHHHHhCcC
Confidence 4999998 9999999999999 999999998654
No 19
>cd02345 ZZ_dah Zinc finger, ZZ type. Zinc finger present in Drosophila dah and related proteins. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding. Dah (discontinuous actin hexagon) is a membrane associated protein essential for cortical furrow formation in Drosophila.
Probab=90.31 E-value=0.14 Score=42.63 Aligned_cols=33 Identities=30% Similarity=0.803 Sum_probs=29.1
Q ss_pred ccccCccc-cccccccccCcC-CcccchhchHHhh
Q 002330 331 VYCNHCAT-SIIDLHRSCPKC-SYELCLTCCKEIC 363 (935)
Q Consensus 331 vyCDnCkT-SI~D~HRSC~~C-syDLCL~CC~ELR 363 (935)
+.||+|.. +|.-++..|..| .||||+.|...-+
T Consensus 1 ~~C~~C~~~~i~g~R~~C~~C~dydLC~~Cf~~~~ 35 (49)
T cd02345 1 LSCSACRKQDISGIRFPCQVCRDYSLCLGCYTKGR 35 (49)
T ss_pred CcCCCCCCCCceEeeEECCCCCCcCchHHHHhCCC
Confidence 46999998 999999999999 4999999998554
No 20
>cd02338 ZZ_PCMF_like Zinc finger, ZZ type. Zinc finger present in potassium channel modulatory factor (PCMF) 1 and related proteins. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding. Human potassium channel modulatory factor 1 or FIGC has been shown to possess intrinsic E3 ubiquitin ligase activity and to promote ubiquitination.
Probab=89.73 E-value=0.16 Score=42.27 Aligned_cols=33 Identities=27% Similarity=0.773 Sum_probs=29.0
Q ss_pred ccccCcc-ccccccccccCcC-CcccchhchHHhh
Q 002330 331 VYCNHCA-TSIIDLHRSCPKC-SYELCLTCCKEIC 363 (935)
Q Consensus 331 vyCDnCk-TSI~D~HRSC~~C-syDLCL~CC~ELR 363 (935)
|.||.|+ .+|.-....|..| .||||..|...-+
T Consensus 1 i~C~~C~~~~i~g~R~~C~~C~d~dlC~~Cf~~~~ 35 (49)
T cd02338 1 VSCDGCGKSNFTGRRYKCLICYDYDLCADCYDSGV 35 (49)
T ss_pred CCCCCCcCCCcEEeeEEeCCCCCCccchhHHhCCC
Confidence 5799999 8999999999999 7999999998543
No 21
>COG0662 {ManC} Mannose-6-phosphate isomerase [Carbohydrate transport and metabolism]
Probab=89.39 E-value=0.26 Score=47.91 Aligned_cols=43 Identities=40% Similarity=0.611 Sum_probs=32.6
Q ss_pred ceEEEeecCceeEecCCCccccccccccceecccccCccchHH
Q 002330 841 PWTFEQKLGEAVFIPAGCPHQVRNLKSCTKVAVDFVSPENVDE 883 (935)
Q Consensus 841 pWtf~Q~lGEAVFIPAGCPHQVRNLkSCIKVAlDFVSPEnV~e 883 (935)
.=.++=+.||+|+||||.||.++|.-+.-=+.++=-+|+..++
T Consensus 74 ~~~~~v~~gd~~~iP~g~~H~~~N~G~~~L~liei~~p~~~~e 116 (127)
T COG0662 74 GEEVEVKAGDSVYIPAGTPHRVRNTGKIPLVLIEVQSPPYLGE 116 (127)
T ss_pred CEEEEecCCCEEEECCCCcEEEEcCCCcceEEEEEecCCcCCC
Confidence 5567778999999999999999999994444444446665543
No 22
>cd02337 ZZ_CBP Zinc finger, ZZ type. Zinc finger present in CBP/p300 and related proteins. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding. CREB-binding protein (CBP) is a large multidomain protein that provides binding sites for transcriptional coactivators, the role of the ZZ domain in CBP/p300 is unclear.
Probab=86.61 E-value=0.27 Score=39.78 Aligned_cols=29 Identities=34% Similarity=1.040 Sum_probs=25.6
Q ss_pred cccCccccccccccccCcC-CcccchhchHH
Q 002330 332 YCNHCATSIIDLHRSCPKC-SYELCLTCCKE 361 (935)
Q Consensus 332 yCDnCkTSI~D~HRSC~~C-syDLCL~CC~E 361 (935)
.||.|.. |.-..+.|..| .||||..|...
T Consensus 2 ~C~~C~~-~~~~r~~C~~C~dfDLC~~C~~~ 31 (41)
T cd02337 2 TCNECKH-HVETRWHCTVCEDYDLCITCYNT 31 (41)
T ss_pred cCCCCCC-cCCCceECCCCcchhhHHHHhCC
Confidence 4999988 66799999999 89999999876
No 23
>TIGR03214 ura-cupin putative allantoin catabolism protein. This model represents a protein containing a tandem arrangement of cupin domains (N-terminal part of pfam07883 and C-terminal more distantly related to pfam00190). This protein is found in the vicinity of genes involved in the catabolism of allantoin, a breakdown product of urate and sometimes of urate iteslf. The distribution of pathway components in the genomes in which this family is observed suggests that the function is linked to the allantoate catabolism to glyoxylate pathway (GenProp0686) since it is sometimes found in genomes lacking any elements of the xanthine-to-allantoin pathways (e.g. in Enterococcus faecalis).
Probab=85.47 E-value=0.42 Score=52.09 Aligned_cols=30 Identities=13% Similarity=0.287 Sum_probs=24.5
Q ss_pred hCccceEEEeecCceeEecCCCcccccccc
Q 002330 837 FGVEPWTFEQKLGEAVFIPAGCPHQVRNLK 866 (935)
Q Consensus 837 yGVepWtf~Q~lGEAVFIPAGCPHQVRNLk 866 (935)
|.+..=...=..||+|||||||||+..|.=
T Consensus 213 ~~~~g~~~~V~~GD~i~i~~~~~h~~~~~G 242 (260)
T TIGR03214 213 YNLDNNWVPVEAGDYIWMGAYCPQACYAGG 242 (260)
T ss_pred EEECCEEEEecCCCEEEECCCCCEEEEecC
Confidence 455555666678999999999999999974
No 24
>KOG0823 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=84.75 E-value=0.96 Score=48.91 Aligned_cols=49 Identities=24% Similarity=0.756 Sum_probs=38.3
Q ss_pred ccCCCcccccccCCCCceEecCcCCCCcccHhHHhhhCCCCChhhhhccCCCCCC
Q 002330 198 ELERIKCHQCMKSERKYVVPCGKCRTKVYCIQCIKQWYPKMSELDVAEICPFCRR 252 (935)
Q Consensus 198 k~~~~~CHQCrqk~~~~~v~C~~C~r~~FC~~CL~~rY~e~~~edv~w~CP~CRg 252 (935)
.+...-|-=|--.-.+.++.| |+ ..||-+||++|-.- . .-...||+|.+
T Consensus 44 ~~~~FdCNICLd~akdPVvTl--CG-HLFCWpClyqWl~~--~-~~~~~cPVCK~ 92 (230)
T KOG0823|consen 44 DGGFFDCNICLDLAKDPVVTL--CG-HLFCWPCLYQWLQT--R-PNSKECPVCKA 92 (230)
T ss_pred CCCceeeeeeccccCCCEEee--cc-cceehHHHHHHHhh--c-CCCeeCCcccc
Confidence 466688999988888888887 99 99999999999631 1 23457899976
No 25
>cd02334 ZZ_dystrophin Zinc finger, ZZ type. Zinc finger present in dystrophin and dystrobrevin. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding. Dystrophin attaches actin filaments to an integral membrane glycoprotein complex in muscle cells. The ZZ domain in dystrophin has been shown to be essential for binding to the membrane protein beta-dystroglycan.
Probab=84.54 E-value=0.68 Score=38.95 Aligned_cols=35 Identities=31% Similarity=0.748 Sum_probs=29.8
Q ss_pred ccccCccc-cccccccccCcC-CcccchhchHHhhcC
Q 002330 331 VYCNHCAT-SIIDLHRSCPKC-SYELCLTCCKEICEG 365 (935)
Q Consensus 331 vyCDnCkT-SI~D~HRSC~~C-syDLCL~CC~ELR~G 365 (935)
+-||.|+. +|.-+...|..| .||||..|...-+.+
T Consensus 1 ~~Cd~C~~~pi~g~RykC~~C~d~DLC~~Cf~~g~~~ 37 (49)
T cd02334 1 AKCNICKEFPITGFRYRCLKCFNYDLCQSCFFSGRTS 37 (49)
T ss_pred CCCCCCCCCCceeeeEECCCCCCcCchHHHHhCCCcC
Confidence 46999995 799999999988 499999999876654
No 26
>cd00162 RING RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H)
Probab=81.47 E-value=1.2 Score=33.81 Aligned_cols=42 Identities=31% Similarity=0.852 Sum_probs=29.0
Q ss_pred ccccccCCCCceEecCcCCCCcccHhHHhhhCCCCChhhhhccCCCCCC
Q 002330 204 CHQCMKSERKYVVPCGKCRTKVYCIQCIKQWYPKMSELDVAEICPFCRR 252 (935)
Q Consensus 204 CHQCrqk~~~~~v~C~~C~r~~FC~~CL~~rY~e~~~edv~w~CP~CRg 252 (935)
|--|...- ...+.-..|+ ..||..|+..|+.. ....||.|+.
T Consensus 2 C~iC~~~~-~~~~~~~~C~-H~~c~~C~~~~~~~-----~~~~Cp~C~~ 43 (45)
T cd00162 2 CPICLEEF-REPVVLLPCG-HVFCRSCIDKWLKS-----GKNTCPLCRT 43 (45)
T ss_pred CCcCchhh-hCceEecCCC-ChhcHHHHHHHHHh-----CcCCCCCCCC
Confidence 45565443 2334445688 88999999998753 3457999986
No 27
>PRK09943 DNA-binding transcriptional repressor PuuR; Provisional
Probab=81.27 E-value=1.1 Score=45.89 Aligned_cols=55 Identities=13% Similarity=0.160 Sum_probs=41.9
Q ss_pred cCccccCHHHHHHHHHHhCccceEEEeecCceeEecCCCccccccccccceecccccCcc
Q 002330 820 DQCFYLSSEHKKKLKEEFGVEPWTFEQKLGEAVFIPAGCPHQVRNLKSCTKVAVDFVSPE 879 (935)
Q Consensus 820 DQ~fYLt~ehk~rLkEEyGVepWtf~Q~lGEAVFIPAGCPHQVRNLkSCIKVAlDFVSPE 879 (935)
++.+|+-.-.- ++-|..=++.-..||.++||||.||..+|..++-=+++-+++|-
T Consensus 129 ~E~~~Vl~G~~-----~~~~~~~~~~l~~Gd~~~~~~~~~H~~~n~~~~~~~~l~~~~p~ 183 (185)
T PRK09943 129 EEIGTVLEGEI-----VLTINGQDYHLVAGQSYAINTGIPHSFSNTSAGICRIISAHTPT 183 (185)
T ss_pred cEEEEEEEeEE-----EEEECCEEEEecCCCEEEEcCCCCeeeeCCCCCCeEEEEEeCCC
Confidence 45555544432 25566777888999999999999999999888766777777774
No 28
>PHA02926 zinc finger-like protein; Provisional
Probab=81.07 E-value=0.69 Score=49.92 Aligned_cols=54 Identities=24% Similarity=0.664 Sum_probs=36.0
Q ss_pred cCCCcccccccCCCC-ceEecC------cCCCCcccHhHHhhhCCCCChhhhhccCCCCCCc
Q 002330 199 LERIKCHQCMKSERK-YVVPCG------KCRTKVYCIQCIKQWYPKMSELDVAEICPFCRRN 253 (935)
Q Consensus 199 ~~~~~CHQCrqk~~~-~~v~C~------~C~r~~FC~~CL~~rY~e~~~edv~w~CP~CRgi 253 (935)
.....|-=|...-.. +...++ +|+ ..||..||.+|-..-....+...||.||..
T Consensus 168 SkE~eCgICmE~I~eK~~~~eRrFGIL~~Cn-HsFCl~CIr~Wr~~r~~~~~~rsCPiCR~~ 228 (242)
T PHA02926 168 SKEKECGICYEVVYSKRLENDRYFGLLDSCN-HIFCITCINIWHRTRRETGASDNCPICRTR 228 (242)
T ss_pred cCCCCCccCccccccccccccccccccCCCC-chHHHHHHHHHHHhccccCcCCcCCCCcce
Confidence 335778888865311 112222 588 899999999999643233466789999974
No 29
>PRK13290 ectC L-ectoine synthase; Reviewed
Probab=78.99 E-value=1.3 Score=43.56 Aligned_cols=37 Identities=16% Similarity=0.098 Sum_probs=27.2
Q ss_pred ceEEEeecCceeEecCCCccccccccccceecccccCcc
Q 002330 841 PWTFEQKLGEAVFIPAGCPHQVRNLKSCTKVAVDFVSPE 879 (935)
Q Consensus 841 pWtf~Q~lGEAVFIPAGCPHQVRNLkSCIKVAlDFVSPE 879 (935)
.=++.=..||+++||||-||+.+|...|.=++. ++|.
T Consensus 74 g~~~~L~aGD~i~~~~~~~H~~~N~e~~~~l~v--~tP~ 110 (125)
T PRK13290 74 GEVHPIRPGTMYALDKHDRHYLRAGEDMRLVCV--FNPP 110 (125)
T ss_pred CEEEEeCCCeEEEECCCCcEEEEcCCCEEEEEE--ECCC
Confidence 334555789999999999999999855554433 5554
No 30
>PLN03208 E3 ubiquitin-protein ligase RMA2; Provisional
Probab=78.43 E-value=2.5 Score=44.83 Aligned_cols=52 Identities=27% Similarity=0.708 Sum_probs=34.1
Q ss_pred cCCCcccccccCCCCceEecCcCCCCcccHhHHhhhCC--CCChh--------hhhccCCCCCCc
Q 002330 199 LERIKCHQCMKSERKYVVPCGKCRTKVYCIQCIKQWYP--KMSEL--------DVAEICPFCRRN 253 (935)
Q Consensus 199 ~~~~~CHQCrqk~~~~~v~C~~C~r~~FC~~CL~~rY~--e~~~e--------dv~w~CP~CRgi 253 (935)
++...|.-|...-...++ +.|+ ..||..||..|.- ..+.+ .-...||.||.-
T Consensus 16 ~~~~~CpICld~~~dPVv--T~CG-H~FC~~CI~~wl~~s~~s~~~~~~~~~~k~~~~CPvCR~~ 77 (193)
T PLN03208 16 GGDFDCNICLDQVRDPVV--TLCG-HLFCWPCIHKWTYASNNSRQRVDQYDHKREPPKCPVCKSD 77 (193)
T ss_pred CCccCCccCCCcCCCcEE--cCCC-chhHHHHHHHHHHhccccccccccccccCCCCcCCCCCCc
Confidence 345678888765544444 5799 9999999999842 11111 123689999983
No 31
>PF07649 C1_3: C1-like domain; InterPro: IPR011424 This short domain is rich in cysteines and histidines. The pattern of conservation is similar to that found in IPR002219 from INTERPRO. C1 domains are protein kinase C-like zinc finger structures. Diacylglycerol (DAG) kinases (DGKs) have a two or three commonly conserved cysteine-rich C1 domains []. DGKs modulate the balance between the two signaling lipids, DAG and phosphatidic acid (PA), by phosphorylating DAG to yield PA []. The PKD (protein kinase D) family are novel DAG receptors. They have twin C1 domains, designated C1a and C1b, which bind DAG or phorbol esters. Individual C1 domains differ in ligand-binding activity and selectivity []. ; GO: 0047134 protein-disulfide reductase activity, 0055114 oxidation-reduction process; PDB: 1V5N_A.
Probab=77.57 E-value=0.94 Score=33.93 Aligned_cols=27 Identities=26% Similarity=0.806 Sum_probs=12.9
Q ss_pred cccCccccccc-cccccCcCCcccchhc
Q 002330 332 YCNHCATSIID-LHRSCPKCSYELCLTC 358 (935)
Q Consensus 332 yCDnCkTSI~D-~HRSC~~CsyDLCL~C 358 (935)
.|+.|+.+|.. +.-+|+.|.|.|.+.|
T Consensus 2 ~C~~C~~~~~~~~~Y~C~~Cdf~lH~~C 29 (30)
T PF07649_consen 2 RCDACGKPIDGGWFYRCSECDFDLHEEC 29 (30)
T ss_dssp --TTTS----S--EEE-TTT-----HHH
T ss_pred cCCcCCCcCCCCceEECccCCCccChhc
Confidence 59999999998 8888999999999887
No 32
>TIGR00218 manA mannose-6-phosphate isomerase, class I. The names phosphomannose isomerase and mannose-6-phosphate isomerase are synonomous. This family contains two rather deeply branched groups. One group contains an experimentally determined phosphomannose isomerase of Streptococcus mutans as well as three uncharacterized paralogous proteins of Bacillus subtilis, all at more than 50 % identity to each other, plus a more distant homolog from Archaeoglobus fulgidus. The other group contains members from E. coli, budding yeast, Borrelia burgdorferi, etc.
Probab=76.81 E-value=1.3 Score=49.21 Aligned_cols=15 Identities=40% Similarity=0.986 Sum_probs=13.7
Q ss_pred ecCceeEecCCCccc
Q 002330 847 KLGEAVFIPAGCPHQ 861 (935)
Q Consensus 847 ~lGEAVFIPAGCPHQ 861 (935)
+.||+||||||.||=
T Consensus 156 ~~Gd~i~ipaGt~HA 170 (302)
T TIGR00218 156 KPGDFFYVPSGTPHA 170 (302)
T ss_pred CCCCEEEeCCCCccc
Confidence 479999999999995
No 33
>cd02343 ZZ_EF Zinc finger, ZZ type. Zinc finger present in proteins with an EF_hand motif. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding.
Probab=75.00 E-value=1.5 Score=36.94 Aligned_cols=35 Identities=23% Similarity=0.533 Sum_probs=28.2
Q ss_pred ccccCccccccccccccCcCC-cccchhchHHhhcC
Q 002330 331 VYCNHCATSIIDLHRSCPKCS-YELCLTCCKEICEG 365 (935)
Q Consensus 331 vyCDnCkTSI~D~HRSC~~Cs-yDLCL~CC~ELR~G 365 (935)
+.||.|...|.-+.-.|-.|. ||||..|...-++.
T Consensus 1 i~CdgC~~~~~~~RykCl~C~d~DlC~~Cf~~g~~~ 36 (48)
T cd02343 1 ISCDGCDEIAPWHRYRCLQCTDMDLCKTCFLGGVKP 36 (48)
T ss_pred CCCCCCCCcCCCceEECCCCCCchhHHHHHhCCccC
Confidence 359999988888877788774 99999999765543
No 34
>COG4101 Predicted mannose-6-phosphate isomerase [Carbohydrate transport and metabolism]
Probab=74.60 E-value=1.4 Score=43.64 Aligned_cols=26 Identities=38% Similarity=0.604 Sum_probs=23.0
Q ss_pred EEEeecCceeEecCCCcccccccccc
Q 002330 843 TFEQKLGEAVFIPAGCPHQVRNLKSC 868 (935)
Q Consensus 843 tf~Q~lGEAVFIPAGCPHQVRNLkSC 868 (935)
+.+-.+||...||+|.|||--||.+=
T Consensus 89 ha~~~pGDf~YiPpgVPHqp~N~S~e 114 (142)
T COG4101 89 HAEVGPGDFFYIPPGVPHQPANLSTE 114 (142)
T ss_pred eEEecCCCeEEcCCCCCCcccccCCC
Confidence 56778999999999999999999743
No 35
>PF13639 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 1IYM_A 2EP4_A 2ECT_A 2JRJ_A 2ECN_A 2ECM_A 3NG2_A 2EA6_A ....
Probab=74.46 E-value=1 Score=35.92 Aligned_cols=29 Identities=41% Similarity=1.035 Sum_probs=21.6
Q ss_pred eEecCcCCCCcccHhHHhhhCCCCChhhhhccCCCCC
Q 002330 215 VVPCGKCRTKVYCIQCIKQWYPKMSELDVAEICPFCR 251 (935)
Q Consensus 215 ~v~C~~C~r~~FC~~CL~~rY~e~~~edv~w~CP~CR 251 (935)
++... |+ ..||..||..|... ...||.||
T Consensus 16 ~~~l~-C~-H~fh~~Ci~~~~~~------~~~CP~CR 44 (44)
T PF13639_consen 16 VVKLP-CG-HVFHRSCIKEWLKR------NNSCPVCR 44 (44)
T ss_dssp EEEET-TS-EEEEHHHHHHHHHH------SSB-TTTH
T ss_pred EEEcc-CC-CeeCHHHHHHHHHh------CCcCCccC
Confidence 44444 98 99999999999843 24999997
No 36
>PRK15131 mannose-6-phosphate isomerase; Provisional
Probab=74.18 E-value=1.6 Score=50.47 Aligned_cols=17 Identities=41% Similarity=0.643 Sum_probs=14.9
Q ss_pred EeecCceeEecCCCccc
Q 002330 845 EQKLGEAVFIPAGCPHQ 861 (935)
Q Consensus 845 ~Q~lGEAVFIPAGCPHQ 861 (935)
.=++|||||||||.||=
T Consensus 240 ~l~pGeaifipAg~~HA 256 (389)
T PRK15131 240 KLNPGEAMFLFAETPHA 256 (389)
T ss_pred EeCCCCEEEeCCCCCeE
Confidence 34689999999999996
No 37
>PF01050 MannoseP_isomer: Mannose-6-phosphate isomerase; InterPro: IPR001538 Mannose-6-phosphate isomerase or phosphomannose isomerase (5.3.1.8 from EC) (PMI) is the enzyme that catalyses the interconversion of mannose-6-phosphate and fructose-6-phosphate. In eukaryotes PMI is involved in the synthesis of GDP-mannose, a constituent of N- and O-linked glycans and GPI anchors and in prokaryotes it participates in a variety of pathways, including capsular polysaccharide biosynthesis and D-mannose metabolism. PMI's belong to the cupin superfamily whose functions range from isomerase and epimerase activities involved in the modification of cell wall carbohydrates in bacteria and plants, to non-enzymatic storage proteins in plant seeds, and transcription factors linked to congenital baldness in mammals []. Three classes of PMI have been defined []. The type II phosphomannose isomerases are bifunctional enzymes 5.3.1.8 from EC. This entry covers the isomerase region of the protein []. The guanosine diphospho-D-mannose pyrophosphorylase region is described in another InterPro entry (see IPR005836 from INTERPRO).; GO: 0016779 nucleotidyltransferase activity, 0005976 polysaccharide metabolic process
Probab=74.05 E-value=1.9 Score=43.84 Aligned_cols=22 Identities=36% Similarity=0.724 Sum_probs=19.5
Q ss_pred ecCceeEecCCCcccccccccc
Q 002330 847 KLGEAVFIPAGCPHQVRNLKSC 868 (935)
Q Consensus 847 ~lGEAVFIPAGCPHQVRNLkSC 868 (935)
..||.|+||+|+.|++.|.-+.
T Consensus 107 ~~g~sv~Ip~g~~H~i~n~g~~ 128 (151)
T PF01050_consen 107 KEGDSVYIPRGAKHRIENPGKT 128 (151)
T ss_pred cCCCEEEECCCCEEEEECCCCc
Confidence 5799999999999999998654
No 38
>cd02342 ZZ_UBA_plant Zinc finger, ZZ type. Zinc finger present in plant ubiquitin-associated (UBA) proteins. The ZZ motif coordinates a zinc ion and most likely participates in ligand binding or molecular scaffolding.
Probab=72.16 E-value=2.1 Score=35.43 Aligned_cols=32 Identities=22% Similarity=0.607 Sum_probs=27.5
Q ss_pred ccccCcc-ccccccccccCcC-CcccchhchHHh
Q 002330 331 VYCNHCA-TSIIDLHRSCPKC-SYELCLTCCKEI 362 (935)
Q Consensus 331 vyCDnCk-TSI~D~HRSC~~C-syDLCL~CC~EL 362 (935)
+.||.|. ++|+-.-..|..| .||||-.|..+-
T Consensus 1 I~CDgCg~~PI~G~RykC~~C~dyDLC~~C~~~~ 34 (43)
T cd02342 1 IQCDGCGVLPITGPRYKSKVKEDYDLCTICFSRM 34 (43)
T ss_pred CCCCCCCCCcccccceEeCCCCCCccHHHHhhhh
Confidence 4699999 5999999999977 699999998754
No 39
>KOG0317 consensus Predicted E3 ubiquitin ligase, integral peroxisomal membrane protein [Posttranslational modification, protein turnover, chaperones]
Probab=70.33 E-value=2.9 Score=46.65 Aligned_cols=47 Identities=28% Similarity=0.850 Sum_probs=37.2
Q ss_pred cCCCcccccccCCCCceEecCcCCCCcccHhHHhhhCCCCChhhhhccCCCCCCcc
Q 002330 199 LERIKCHQCMKSERKYVVPCGKCRTKVYCIQCIKQWYPKMSELDVAEICPFCRRNC 254 (935)
Q Consensus 199 ~~~~~CHQCrqk~~~~~v~C~~C~r~~FC~~CL~~rY~e~~~edv~w~CP~CRgiC 254 (935)
.+...|-=|--... --.|+-|+ ..||-.||.-|-.+-++ ||.||--|
T Consensus 237 ~a~~kC~LCLe~~~--~pSaTpCG-HiFCWsCI~~w~~ek~e------CPlCR~~~ 283 (293)
T KOG0317|consen 237 EATRKCSLCLENRS--NPSATPCG-HIFCWSCILEWCSEKAE------CPLCREKF 283 (293)
T ss_pred CCCCceEEEecCCC--CCCcCcCc-chHHHHHHHHHHccccC------CCcccccC
Confidence 45678989986653 34677799 99999999999987654 99999754
No 40
>PHA02929 N1R/p28-like protein; Provisional
Probab=70.26 E-value=3 Score=45.49 Aligned_cols=46 Identities=33% Similarity=0.886 Sum_probs=30.8
Q ss_pred CCcccccccCCCC------ceEecCcCCCCcccHhHHhhhCCCCChhhhhccCCCCCCc
Q 002330 201 RIKCHQCMKSERK------YVVPCGKCRTKVYCIQCIKQWYPKMSELDVAEICPFCRRN 253 (935)
Q Consensus 201 ~~~CHQCrqk~~~------~~v~C~~C~r~~FC~~CL~~rY~e~~~edv~w~CP~CRgi 253 (935)
...|--|...-.. +...=..|+ ..||..||..|... .-.||.||..
T Consensus 174 ~~eC~ICle~~~~~~~~~~~~~vl~~C~-H~FC~~CI~~Wl~~------~~tCPlCR~~ 225 (238)
T PHA02929 174 DKECAICMEKVYDKEIKNMYFGILSNCN-HVFCIECIDIWKKE------KNTCPVCRTP 225 (238)
T ss_pred CCCCccCCcccccCccccccceecCCCC-CcccHHHHHHHHhc------CCCCCCCCCE
Confidence 3567777654211 122334688 89999999999753 3489999974
No 41
>smart00184 RING Ring finger. E3 ubiquitin-protein ligase activity is intrinsic to the RING domain of c-Cbl and is likely to be a general function of this domain; Various RING fingers exhibit binding activity towards E2 ubiquitin-conjugating enzymes (Ubc' s)
Probab=70.21 E-value=2.8 Score=30.53 Aligned_cols=27 Identities=30% Similarity=1.019 Sum_probs=20.7
Q ss_pred cCcCCCCcccHhHHhhhCCCCChhhhhccCCCC
Q 002330 218 CGKCRTKVYCIQCIKQWYPKMSELDVAEICPFC 250 (935)
Q Consensus 218 C~~C~r~~FC~~CL~~rY~e~~~edv~w~CP~C 250 (935)
-..|+ ..||..|+..|+. .....||.|
T Consensus 13 ~~~C~-H~~c~~C~~~~~~-----~~~~~CP~C 39 (39)
T smart00184 13 VLPCG-HTFCRSCIRKWLK-----SGNNTCPIC 39 (39)
T ss_pred EecCC-ChHHHHHHHHHHH-----hCcCCCCCC
Confidence 34588 8899999999976 234579987
No 42
>KOG0320 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=69.96 E-value=4.8 Score=42.37 Aligned_cols=47 Identities=36% Similarity=0.742 Sum_probs=36.4
Q ss_pred cCCCcccccccCCCCceEecCcCCCCcccHhHHhhhCCCCChhhhhccCCCCCC
Q 002330 199 LERIKCHQCMKSERKYVVPCGKCRTKVYCIQCIKQWYPKMSELDVAEICPFCRR 252 (935)
Q Consensus 199 ~~~~~CHQCrqk~~~~~v~C~~C~r~~FC~~CL~~rY~e~~~edv~w~CP~CRg 252 (935)
.....|--|.-.....+..=++|+ ..||..||++.- ...-+||.|+.
T Consensus 129 ~~~~~CPiCl~~~sek~~vsTkCG-HvFC~~Cik~al------k~~~~CP~C~k 175 (187)
T KOG0320|consen 129 EGTYKCPICLDSVSEKVPVSTKCG-HVFCSQCIKDAL------KNTNKCPTCRK 175 (187)
T ss_pred ccccCCCceecchhhccccccccc-hhHHHHHHHHHH------HhCCCCCCccc
Confidence 445889999987766565557899 999999999754 33468999985
No 43
>PRK04190 glucose-6-phosphate isomerase; Provisional
Probab=68.92 E-value=3.5 Score=43.53 Aligned_cols=43 Identities=21% Similarity=0.275 Sum_probs=31.5
Q ss_pred cceEEEeecCceeEecCCCccccccccccceecccccCccchHH
Q 002330 840 EPWTFEQKLGEAVFIPAGCPHQVRNLKSCTKVAVDFVSPENVDE 883 (935)
Q Consensus 840 epWtf~Q~lGEAVFIPAGCPHQVRNLkSCIKVAlDFVSPEnV~e 883 (935)
+.+.+.=..||+|+||+|..|++.|.-+.-=+.+- |.|...++
T Consensus 118 ~~~~~~v~pGd~v~IPpg~~H~~iN~G~epl~fl~-v~p~~~~~ 160 (191)
T PRK04190 118 EARWIEMEPGTVVYVPPYWAHRSVNTGDEPLVFLA-CYPADAGH 160 (191)
T ss_pred cEEEEEECCCCEEEECCCCcEEeEECCCCCEEEEE-EEcCCccc
Confidence 37889999999999999999999998654433332 44444443
No 44
>COG1482 ManA Phosphomannose isomerase [Carbohydrate transport and metabolism]
Probab=68.82 E-value=2.5 Score=47.76 Aligned_cols=19 Identities=53% Similarity=0.903 Sum_probs=16.5
Q ss_pred EEeecCceeEecCCCcccc
Q 002330 844 FEQKLGEAVFIPAGCPHQV 862 (935)
Q Consensus 844 f~Q~lGEAVFIPAGCPHQV 862 (935)
+.=++|||+|||||.||=.
T Consensus 160 v~lkpGe~~fl~Agt~HA~ 178 (312)
T COG1482 160 VKLKPGEAFFLPAGTPHAY 178 (312)
T ss_pred EecCCCCEEEecCCCceee
Confidence 5567899999999999974
No 45
>KOG2508 consensus Predicted phospholipase [Lipid transport and metabolism]
Probab=67.44 E-value=5.6 Score=45.83 Aligned_cols=39 Identities=26% Similarity=0.491 Sum_probs=31.8
Q ss_pred HHHHHHHh-hcCCCEEEEccccccCCC-CCChh-HHHHHHhh
Q 002330 505 LFRFQKHW-IKGEPVIVRNVLDKVTGL-SWEPM-VMWRALCE 543 (935)
Q Consensus 505 l~hFQ~hW-~kGePVIVr~Vl~~~s~l-sW~P~-~mwra~~e 543 (935)
-.+|-+-| .+..|||+|+.+..-.++ .|.+. ++..|++.
T Consensus 33 pl~Fyr~fvs~n~PvIIrkAL~hWpal~lWs~p~Yl~~algd 74 (437)
T KOG2508|consen 33 PLDFYRKFVSTNTPVIIRKALPHWPALKLWSQPDYLLSALGD 74 (437)
T ss_pred hHHHHHhhhcCCCcEEEecccccCchhhccCchHHHHHhccC
Confidence 46888888 789999999999977777 89888 77766654
No 46
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=67.41 E-value=1.3 Score=54.36 Aligned_cols=44 Identities=30% Similarity=0.760 Sum_probs=32.0
Q ss_pred CCCcccccccCCCCceEecCcCCCCcccHhHHhhhCCCCChhhhhccCCCCC
Q 002330 200 ERIKCHQCMKSERKYVVPCGKCRTKVYCIQCIKQWYPKMSELDVAEICPFCR 251 (935)
Q Consensus 200 ~~~~CHQCrqk~~~~~v~C~~C~r~~FC~~CL~~rY~e~~~edv~w~CP~CR 251 (935)
+..+|--|...-.+ +.=++|. ..||..|++.||.- -.-+||.|-
T Consensus 642 ~~LkCs~Cn~R~Kd--~vI~kC~-H~FC~~Cvq~r~et-----RqRKCP~Cn 685 (698)
T KOG0978|consen 642 ELLKCSVCNTRWKD--AVITKCG-HVFCEECVQTRYET-----RQRKCPKCN 685 (698)
T ss_pred hceeCCCccCchhh--HHHHhcc-hHHHHHHHHHHHHH-----hcCCCCCCC
Confidence 46789999833232 3335799 99999999999963 345999863
No 47
>PF13920 zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger); PDB: 2YHN_B 2YHO_G 3T6P_A 2CSY_A 2VJE_B 2VJF_B 2HDP_B 2EA5_A 2ECG_A 3EB5_A ....
Probab=67.01 E-value=2.8 Score=34.38 Aligned_cols=42 Identities=26% Similarity=0.770 Sum_probs=30.9
Q ss_pred CcccccccCCCCceEecCcCCCCc-ccHhHHhhhCCCCChhhhhccCCCCCC
Q 002330 202 IKCHQCMKSERKYVVPCGKCRTKV-YCIQCIKQWYPKMSELDVAEICPFCRR 252 (935)
Q Consensus 202 ~~CHQCrqk~~~~~v~C~~C~r~~-FC~~CL~~rY~e~~~edv~w~CP~CRg 252 (935)
..|.-|...... +.-..|+ -. ||..|+.+++. ....||.||.
T Consensus 3 ~~C~iC~~~~~~--~~~~pCg-H~~~C~~C~~~~~~------~~~~CP~Cr~ 45 (50)
T PF13920_consen 3 EECPICFENPRD--VVLLPCG-HLCFCEECAERLLK------RKKKCPICRQ 45 (50)
T ss_dssp SB-TTTSSSBSS--EEEETTC-EEEEEHHHHHHHHH------TTSBBTTTTB
T ss_pred CCCccCCccCCc--eEEeCCC-ChHHHHHHhHHhcc------cCCCCCcCCh
Confidence 568888887653 3334688 66 99999999986 4568999986
No 48
>PLN02288 mannose-6-phosphate isomerase
Probab=64.67 E-value=3.3 Score=48.13 Aligned_cols=15 Identities=40% Similarity=0.720 Sum_probs=14.0
Q ss_pred ecCceeEecCCCccc
Q 002330 847 KLGEAVFIPAGCPHQ 861 (935)
Q Consensus 847 ~lGEAVFIPAGCPHQ 861 (935)
.+|||||||||.||=
T Consensus 256 ~PGeaifl~ag~~HA 270 (394)
T PLN02288 256 NPGEALYLGANEPHA 270 (394)
T ss_pred CCCCEEEecCCCCce
Confidence 589999999999996
No 49
>PF10571 UPF0547: Uncharacterised protein family UPF0547; InterPro: IPR018886 This domain may well be a type of zinc-finger as it carries two pairs of highly conserved cysteine residues though with no accompanying histidines. Several members are annotated as putative helicases.
Probab=63.75 E-value=4.1 Score=30.26 Aligned_cols=23 Identities=26% Similarity=0.959 Sum_probs=21.1
Q ss_pred cccCccccccccccccCcCCccc
Q 002330 332 YCNHCATSIIDLHRSCPKCSYEL 354 (935)
Q Consensus 332 yCDnCkTSI~D~HRSC~~CsyDL 354 (935)
.|..|..-|-.--+.||.|+|++
T Consensus 2 ~CP~C~~~V~~~~~~Cp~CG~~F 24 (26)
T PF10571_consen 2 TCPECGAEVPESAKFCPHCGYDF 24 (26)
T ss_pred cCCCCcCCchhhcCcCCCCCCCC
Confidence 48899999999999999999986
No 50
>TIGR00599 rad18 DNA repair protein rad18. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=63.01 E-value=5.7 Score=46.33 Aligned_cols=48 Identities=25% Similarity=0.646 Sum_probs=35.7
Q ss_pred cCCCcccccccCCCCceEecCcCCCCcccHhHHhhhCCCCChhhhhccCCCCCCccc
Q 002330 199 LERIKCHQCMKSERKYVVPCGKCRTKVYCIQCIKQWYPKMSELDVAEICPFCRRNCN 255 (935)
Q Consensus 199 ~~~~~CHQCrqk~~~~~v~C~~C~r~~FC~~CL~~rY~e~~~edv~w~CP~CRgiCN 255 (935)
.....|.-|...-...+ -..|+ ..||..||..+.... ..||.|+..+.
T Consensus 24 e~~l~C~IC~d~~~~Pv--itpCg-H~FCs~CI~~~l~~~------~~CP~Cr~~~~ 71 (397)
T TIGR00599 24 DTSLRCHICKDFFDVPV--LTSCS-HTFCSLCIRRCLSNQ------PKCPLCRAEDQ 71 (397)
T ss_pred ccccCCCcCchhhhCcc--CCCCC-CchhHHHHHHHHhCC------CCCCCCCCccc
Confidence 45679999986543333 35799 999999999987642 37999988754
No 51
>KOG4582 consensus Uncharacterized conserved protein, contains ZZ-type Zn-finger [General function prediction only]
Probab=62.70 E-value=3.3 Score=45.94 Aligned_cols=33 Identities=30% Similarity=0.825 Sum_probs=29.6
Q ss_pred cccccCccc-cccccccccCcCC-cccchhchHHh
Q 002330 330 RVYCNHCAT-SIIDLHRSCPKCS-YELCLTCCKEI 362 (935)
Q Consensus 330 RvyCDnCkT-SI~D~HRSC~~Cs-yDLCL~CC~EL 362 (935)
-+-||+|.+ .|+-.-..|.-|. ||||=+|-...
T Consensus 152 ~v~CD~C~~~~IvG~RyKC~~C~dYDLCe~Ce~~~ 186 (278)
T KOG4582|consen 152 SVPCDNCGKPGIVGARYKCTVCPDYDLCERCEAGN 186 (278)
T ss_pred cccCCCccCCccccceeeecCCCccchhHHhhcCC
Confidence 378999999 9999999999885 99999998765
No 52
>PF13248 zf-ribbon_3: zinc-ribbon domain
Probab=62.23 E-value=3.8 Score=30.02 Aligned_cols=25 Identities=28% Similarity=0.814 Sum_probs=22.2
Q ss_pred cccccCccccccccccccCcCCccc
Q 002330 330 RVYCNHCATSIIDLHRSCPKCSYEL 354 (935)
Q Consensus 330 RvyCDnCkTSI~D~HRSC~~CsyDL 354 (935)
.++|.+|.+.|-+=.+-|++|+..|
T Consensus 2 ~~~Cp~Cg~~~~~~~~fC~~CG~~L 26 (26)
T PF13248_consen 2 EMFCPNCGAEIDPDAKFCPNCGAKL 26 (26)
T ss_pred cCCCcccCCcCCcccccChhhCCCC
Confidence 3689999999999999999999765
No 53
>PF15227 zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB: 2EGP_A 2ECV_A 2ECJ_A 2YSL_A 2YSJ_A.
Probab=61.67 E-value=4.3 Score=32.78 Aligned_cols=28 Identities=25% Similarity=0.766 Sum_probs=19.5
Q ss_pred cCCCCcccHhHHhhhCCCCChhhhhccCCCC
Q 002330 220 KCRTKVYCIQCIKQWYPKMSELDVAEICPFC 250 (935)
Q Consensus 220 ~C~r~~FC~~CL~~rY~e~~~edv~w~CP~C 250 (935)
.|+ -.||..||.++..+... ..+.||.|
T Consensus 15 ~CG-H~FC~~Cl~~~~~~~~~--~~~~CP~C 42 (42)
T PF15227_consen 15 PCG-HSFCRSCLERLWKEPSG--SGFSCPEC 42 (42)
T ss_dssp SSS-SEEEHHHHHHHHCCSSS--ST---SSS
T ss_pred CCc-CHHHHHHHHHHHHccCC--cCCCCcCC
Confidence 588 99999999999875432 22889987
No 54
>TIGR01479 GMP_PMI mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase. This enzyme is known to be bifunctional, as both mannose-6-phosphate isomerase (EC 5.3.1.8) (PMI) and mannose-1-phosphate guanylyltransferase (EC 2.7.7.22) in Pseudomonas aeruginosa, Xanthomonas campestris, and Gluconacetobacter xylinus. The literature on the enzyme from E. coli attributes mannose-6-phosphate isomerase activity to an adjacent gene, but the present sequence has not been shown to lack the activity. The PMI domain is C-terminal.
Probab=61.08 E-value=4.4 Score=47.73 Aligned_cols=43 Identities=19% Similarity=0.226 Sum_probs=29.7
Q ss_pred ccceEEEeecCceeEecCCCccccccccccceecccccCccch
Q 002330 839 VEPWTFEQKLGEAVFIPAGCPHQVRNLKSCTKVAVDFVSPENV 881 (935)
Q Consensus 839 VepWtf~Q~lGEAVFIPAGCPHQVRNLkSCIKVAlDFVSPEnV 881 (935)
|..=++.=..||.|+||+|.||+.+|.-+--=+.+--.+|+-+
T Consensus 412 ~dg~~~~l~~GDsi~ip~~~~H~~~N~g~~~~~~i~v~~~~~~ 454 (468)
T TIGR01479 412 IGDETLLLTENESTYIPLGVIHRLENPGKIPLELIEVQSGSYL 454 (468)
T ss_pred ECCEEEEecCCCEEEECCCCcEEEEcCCCCCEEEEEEEcCCCC
Confidence 3344566788999999999999999987643333333445533
No 55
>PF13923 zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger); PDB: 3HCU_A 2ECI_A 2JMD_A 3HCS_B 3HCT_A 3ZTG_A 2YUR_A 3L11_A.
Probab=60.39 E-value=6 Score=30.92 Aligned_cols=29 Identities=31% Similarity=0.887 Sum_probs=22.5
Q ss_pred eEecCcCCCCcccHhHHhhhCCCCChhhhhccCCCC
Q 002330 215 VVPCGKCRTKVYCIQCIKQWYPKMSELDVAEICPFC 250 (935)
Q Consensus 215 ~v~C~~C~r~~FC~~CL~~rY~e~~~edv~w~CP~C 250 (935)
.+....|+ ..||..|+.++... ...||.|
T Consensus 11 ~~~~~~CG-H~fC~~C~~~~~~~------~~~CP~C 39 (39)
T PF13923_consen 11 PVVVTPCG-HSFCKECIEKYLEK------NPKCPVC 39 (39)
T ss_dssp EEEECTTS-EEEEHHHHHHHHHC------TSB-TTT
T ss_pred cCEECCCC-CchhHHHHHHHHHC------cCCCcCC
Confidence 44677899 99999999998753 2689987
No 56
>PF13240 zinc_ribbon_2: zinc-ribbon domain
Probab=60.03 E-value=4.4 Score=29.21 Aligned_cols=23 Identities=39% Similarity=0.969 Sum_probs=20.7
Q ss_pred cccCccccccccccccCcCCccc
Q 002330 332 YCNHCATSIIDLHRSCPKCSYEL 354 (935)
Q Consensus 332 yCDnCkTSI~D~HRSC~~CsyDL 354 (935)
||-+|...|-|=.+-|++|+..|
T Consensus 1 ~Cp~CG~~~~~~~~fC~~CG~~l 23 (23)
T PF13240_consen 1 YCPNCGAEIEDDAKFCPNCGTPL 23 (23)
T ss_pred CCcccCCCCCCcCcchhhhCCcC
Confidence 69999999999999999999865
No 57
>PF00190 Cupin_1: Cupin; InterPro: IPR006045 This family represents the conserved barrel domain of the 'cupin' superfamily ('cupa' is the Latin term for a small barrel). This family contains 11S and 7S plant seed storage proteins, and germins. Plant seed storage proteins provide the major nitrogen source for the developing plant. ; GO: 0045735 nutrient reservoir activity; PDB: 2E9Q_A 2EVX_A 1OD5_A 1UCX_A 1UD1_C 1FXZ_C 3KGL_C 3KSC_D 1UIJ_F 1IPK_B ....
Probab=59.42 E-value=7.5 Score=38.26 Aligned_cols=38 Identities=32% Similarity=0.496 Sum_probs=26.7
Q ss_pred EEEee----cCceeEecCCCccccccc--cccceeccccc-Cccc
Q 002330 843 TFEQK----LGEAVFIPAGCPHQVRNL--KSCTKVAVDFV-SPEN 880 (935)
Q Consensus 843 tf~Q~----lGEAVFIPAGCPHQVRNL--kSCIKVAlDFV-SPEn 880 (935)
.+.|. .||.++||+|.||=+.|. .+.+.++.=++ +|++
T Consensus 81 ~~~~~v~l~~Gdv~~vP~G~~h~~~n~~~~~~~~~~~f~~~~~~~ 125 (144)
T PF00190_consen 81 DFSQKVRLKAGDVFVVPAGHPHWIINDGDDEALVLIIFDTNNPPN 125 (144)
T ss_dssp EEEEEEEEETTEEEEE-TT-EEEEEECSSSSEEEEEEEEESSTTG
T ss_pred eeeceeeeecccceeeccceeEEEEcCCCCCCEEEEEEECCCCcc
Confidence 45565 999999999999999999 56666655444 3444
No 58
>smart00249 PHD PHD zinc finger. The plant homeodomain (PHD) finger is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in epigenetics and chromatin-mediated transcriptional regulation. The PHD finger binds two zinc ions using the so-called 'cross-brace' motif and is thus structurally related to the KOG2583 consensus Ubiquinol cytochrome c reductase, subunit QCR2 [Energy production and conversion]
Probab=56.31 E-value=7.5 Score=45.35 Aligned_cols=46 Identities=37% Similarity=0.557 Sum_probs=39.5
Q ss_pred cccchhccccCCCCCCceecCC--CCCcCchhhHHHH-HHHhhcCCCEEEE
Q 002330 474 TDMLCKAASREGSDDNLLYCPD--STKIQEDEELFRF-QKHWIKGEPVIVR 521 (935)
Q Consensus 474 ~~~lrkaA~Re~s~dN~LYcP~--~~di~~~~~l~hF-Q~hW~kGePVIVr 521 (935)
-++|.+||+|. +-.|-||||. +..+.. .+|.+| ++|..+|.-|+|-
T Consensus 158 ~e~lH~aAfRn-gLgnslY~p~~~vg~vss-~eL~~Fa~k~fv~gn~~lvg 206 (429)
T KOG2583|consen 158 IEQLHAAAFRN-GLGNSLYSPGYQVGSVSS-SELKDFAAKHFVKGNAVLVG 206 (429)
T ss_pred HHHHHHHHHhc-ccCCcccCCcccccCccH-HHHHHHHHHHhhccceEEEe
Confidence 46789999998 8999999996 666777 889999 6899999999885
No 60
>PF14634 zf-RING_5: zinc-RING finger domain
Probab=56.05 E-value=11 Score=30.43 Aligned_cols=42 Identities=24% Similarity=0.752 Sum_probs=28.4
Q ss_pred ccccccCCC-CceEecCcCCCCcccHhHHhhhCCCCChhhhhccCCCCCC
Q 002330 204 CHQCMKSER-KYVVPCGKCRTKVYCIQCIKQWYPKMSELDVAEICPFCRR 252 (935)
Q Consensus 204 CHQCrqk~~-~~~v~C~~C~r~~FC~~CL~~rY~e~~~edv~w~CP~CRg 252 (935)
|-.|.+.-. .....=++|+ -.||..|+.+.. .....||+|+.
T Consensus 2 C~~C~~~~~~~~~~~l~~Cg-H~~C~~C~~~~~------~~~~~CP~C~k 44 (44)
T PF14634_consen 2 CNICFEKYSEERRPRLTSCG-HIFCEKCLKKLK------GKSVKCPICRK 44 (44)
T ss_pred CcCcCccccCCCCeEEcccC-CHHHHHHHHhhc------CCCCCCcCCCC
Confidence 455655541 2223334688 999999999888 44468999974
No 61
>PF00097 zf-C3HC4: Zinc finger, C3HC4 type (RING finger); InterPro: IPR018957 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C3HC4 type zinc-finger (RING finger) is a cysteine-rich domain of 40 to 60 residues that coordinates two zinc ions, and has the consensus sequence: C-X2-C-X(9-39)-C-X(1-3)-H-X(2-3)-C-X2-C-X(4-48)-C-X2-C where X is any amino acid []. Many proteins containing a RING finger play a key role in the ubiquitination pathway []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1CHC_A 2ECW_A 2Y43_B 1V87_A 2DJB_A 2H0D_B 3RPG_C 3KNV_A 2CKL_B 1JM7_A ....
Probab=55.94 E-value=5.4 Score=31.02 Aligned_cols=41 Identities=24% Similarity=0.794 Sum_probs=26.8
Q ss_pred ccccccCCCCceEecCcCCCCcccHhHHhhhCCCCChhhhhccCCCC
Q 002330 204 CHQCMKSERKYVVPCGKCRTKVYCIQCIKQWYPKMSELDVAEICPFC 250 (935)
Q Consensus 204 CHQCrqk~~~~~v~C~~C~r~~FC~~CL~~rY~e~~~edv~w~CP~C 250 (935)
|.-|...-... +.=..|+ -.||..||.+|+.. .....||.|
T Consensus 1 C~iC~~~~~~~-~~~~~C~-H~fC~~C~~~~~~~----~~~~~CP~C 41 (41)
T PF00097_consen 1 CPICLEPFEDP-VILLPCG-HSFCRDCLRKWLEN----SGSVKCPLC 41 (41)
T ss_dssp ETTTSSBCSSE-EEETTTS-EEEEHHHHHHHHHH----TSSSBTTTT
T ss_pred CCcCCccccCC-CEEecCC-CcchHHHHHHHHHh----cCCccCCcC
Confidence 34454443322 2345688 89999999999863 334569987
No 62
>PF00628 PHD: PHD-finger; InterPro: IPR019787 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the PHD (homeodomain) zinc finger domain [,], which is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in chromatin-mediated transcriptional regulation. The PHD finger motif is reminiscent of, but distinct from the C3HC4 type RING finger. The function of this domain is not yet known but in analogy with the LIM domain it could be involved in protein-protein interaction and be important for the assembly or activity of multicomponent complexes involved in transcriptional activation or repression. Alternatively, the interactions could be intra-molecular and be important in maintaining the structural integrity of the protein. In similarity to the RING finger and the LIM domain, the PHD finger is thought to bind two zinc ions. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0005515 protein binding; PDB: 3ZVY_A 2LGG_A 3SOW_A 3SOU_B 3ASL_A 3ASK_A 3ZVZ_B 3T6R_A 2LGK_A 3SOX_B ....
Probab=53.49 E-value=1.7 Score=35.39 Aligned_cols=48 Identities=23% Similarity=0.510 Sum_probs=29.2
Q ss_pred cccccccCC-CCceEecCcCCCCcccHhHHhhhCCCCChhhhhccCCCCC
Q 002330 203 KCHQCMKSE-RKYVVPCGKCRTKVYCIQCIKQWYPKMSELDVAEICPFCR 251 (935)
Q Consensus 203 ~CHQCrqk~-~~~~v~C~~C~r~~FC~~CL~~rY~e~~~edv~w~CP~CR 251 (935)
+|+.|++.+ .+.++.|..|+ ..|=..|+...-.........|.||.|+
T Consensus 1 ~C~vC~~~~~~~~~i~C~~C~-~~~H~~C~~~~~~~~~~~~~~w~C~~C~ 49 (51)
T PF00628_consen 1 YCPVCGQSDDDGDMIQCDSCN-RWYHQECVGPPEKAEEIPSGDWYCPNCR 49 (51)
T ss_dssp EBTTTTSSCTTSSEEEBSTTS-CEEETTTSTSSHSHHSHHSSSBSSHHHH
T ss_pred eCcCCCCcCCCCCeEEcCCCC-hhhCcccCCCChhhccCCCCcEECcCCc
Confidence 478888855 67899999999 4343444432221111112379999885
No 63
>KOG0457 consensus Histone acetyltransferase complex SAGA/ADA, subunit ADA2 [Chromatin structure and dynamics]
Probab=53.28 E-value=5.7 Score=46.55 Aligned_cols=34 Identities=29% Similarity=0.861 Sum_probs=29.8
Q ss_pred CCCcccccCccccccccc-cccCcCC-cccchhchH
Q 002330 327 NDERVYCNHCATSIIDLH-RSCPKCS-YELCLTCCK 360 (935)
Q Consensus 327 ~DERvyCDnCkTSI~D~H-RSC~~Cs-yDLCL~CC~ 360 (935)
..+-..||+|..-|-+.- -.|-.|- |||||.|+.
T Consensus 11 ~g~ky~C~~C~~dit~~i~ikCaeCp~fdLCl~CFs 46 (438)
T KOG0457|consen 11 PGGKYNCDYCSLDITGLIRIKCAECPDFDLCLQCFS 46 (438)
T ss_pred CCCCCCCccHhHHhccceEEEeecCCCcchhHHHHh
Confidence 446778999999999875 8999999 999999985
No 64
>COG5432 RAD18 RING-finger-containing E3 ubiquitin ligase [Signal transduction mechanisms]
Probab=53.02 E-value=7.4 Score=43.71 Aligned_cols=44 Identities=27% Similarity=0.881 Sum_probs=33.4
Q ss_pred cCCCcccccccCCCCceEecC-cCCCCcccHhHHhhhCCCCChhhhhccCCCCCC
Q 002330 199 LERIKCHQCMKSERKYVVPCG-KCRTKVYCIQCIKQWYPKMSELDVAEICPFCRR 252 (935)
Q Consensus 199 ~~~~~CHQCrqk~~~~~v~C~-~C~r~~FC~~CL~~rY~e~~~edv~w~CP~CRg 252 (935)
.....||-|.- ...++|- .|+ ..||.-||+++.++-+ .||+||-
T Consensus 23 Ds~lrC~IC~~---~i~ip~~TtCg-HtFCslCIR~hL~~qp------~CP~Cr~ 67 (391)
T COG5432 23 DSMLRCRICDC---RISIPCETTCG-HTFCSLCIRRHLGTQP------FCPVCRE 67 (391)
T ss_pred hhHHHhhhhhh---eeecceecccc-cchhHHHHHHHhcCCC------CCccccc
Confidence 34567888853 3456775 499 9999999999988653 5998886
No 65
>PTZ00194 60S ribosomal protein L26; Provisional
Probab=52.90 E-value=6.6 Score=40.04 Aligned_cols=43 Identities=19% Similarity=0.317 Sum_probs=39.1
Q ss_pred cCCcccCccccCHHHHHHHHHHhCccceEEEeecCceeEecCCCc
Q 002330 815 IHPIHDQCFYLSSEHKKKLKEEFGVEPWTFEQKLGEAVFIPAGCP 859 (935)
Q Consensus 815 ~dPIHDQ~fYLt~ehk~rLkEEyGVepWtf~Q~lGEAVFIPAGCP 859 (935)
.-|+|...-.+.+.+=+.|+++|||..|.| +-||-|.|=+|=.
T Consensus 18 ~Ap~h~r~k~msa~LSkeLr~k~~~Rs~~I--kkGD~V~Vi~Gk~ 60 (143)
T PTZ00194 18 TAPSHLRRKLMSAPLSKELRAKYNVRSMPV--RKDDEVMVVRGHH 60 (143)
T ss_pred cCcHHHHHHHhcCccCHHHHHHhCCcccee--ecCCEEEEecCCC
Confidence 568999999999999999999999999987 6799999988864
No 66
>PF08007 Cupin_4: Cupin superfamily protein; InterPro: IPR022777 This signature represents primarily the cupin fold found in JmjC transcription factors. The fold is also found in lysine-specific demethylase NO66.; PDB: 2XDV_A 1VRB_B 4DIQ_B.
Probab=52.47 E-value=13 Score=41.70 Aligned_cols=41 Identities=22% Similarity=0.366 Sum_probs=31.1
Q ss_pred eEEEeecCceeEecCCCccccccccccceecccccCccchH
Q 002330 842 WTFEQKLGEAVFIPAGCPHQVRNLKSCTKVAVDFVSPENVD 882 (935)
Q Consensus 842 Wtf~Q~lGEAVFIPAGCPHQVRNLkSCIKVAlDFVSPEnV~ 882 (935)
..|+=.+||..+||.|++|++.....|+.+++-|..|-...
T Consensus 176 ~~~~L~pGD~LYlPrG~~H~~~~~~~S~hltv~~~~~t~~d 216 (319)
T PF08007_consen 176 EEVVLEPGDVLYLPRGWWHQAVTTDPSLHLTVGFRAPTWAD 216 (319)
T ss_dssp EEEEE-TT-EEEE-TT-EEEEEESS-EEEEEEEECCEBHHH
T ss_pred EEEEECCCCEEEECCCccCCCCCCCCceEEEEeeeCCchhh
Confidence 35777899999999999999999999999999999984433
No 67
>PRK15460 cpsB mannose-1-phosphate guanyltransferase; Provisional
Probab=52.21 E-value=8.1 Score=46.04 Aligned_cols=46 Identities=17% Similarity=0.198 Sum_probs=30.6
Q ss_pred CccceEEEeecCceeEecCCCccccccccccceecccccCccchHH
Q 002330 838 GVEPWTFEQKLGEAVFIPAGCPHQVRNLKSCTKVAVDFVSPENVDE 883 (935)
Q Consensus 838 GVepWtf~Q~lGEAVFIPAGCPHQVRNLkSCIKVAlDFVSPEnV~e 883 (935)
.|..=++.=..||.|+||+|.||+.+|.-.=-=+.+--.+|+-++|
T Consensus 420 ~idg~~~~L~~GDSi~ip~g~~H~~~N~g~~~l~iI~V~~g~yl~e 465 (478)
T PRK15460 420 TIDGDIKLLGENESIYIPLGATHCLENPGKIPLDLIEVRSGSYLEE 465 (478)
T ss_pred EECCEEEEecCCCEEEECCCCcEEEEcCCCCCEEEEEEEcCCCCCC
Confidence 3444456668999999999999999998543222333355554444
No 68
>smart00154 ZnF_AN1 AN1-like Zinc finger. Zinc finger at the C-terminus of An1, a ubiquitin-like protein in Xenopus laevis.
Probab=52.04 E-value=9.4 Score=30.70 Aligned_cols=31 Identities=26% Similarity=0.648 Sum_probs=24.1
Q ss_pred ccccccCCCCceEecCcCCCCcccHhHHhhhCCCC
Q 002330 204 CHQCMKSERKYVVPCGKCRTKVYCIQCIKQWYPKM 238 (935)
Q Consensus 204 CHQCrqk~~~~~v~C~~C~r~~FC~~CL~~rY~e~ 238 (935)
|+.|++++.-....|..|+ +.||. .-||++.
T Consensus 1 C~~C~~~~~l~~f~C~~C~-~~FC~---~HR~~e~ 31 (39)
T smart00154 1 CHFCRKKVGLTGFKCRHCG-NLFCG---EHRLPED 31 (39)
T ss_pred CcccCCcccccCeECCccC-Ccccc---ccCCccc
Confidence 8999999875478899999 88964 5666643
No 69
>PF02041 Auxin_BP: Auxin binding protein; InterPro: IPR000526 Auxin binding protein is located in the lumen of the endoplasmic reticulum (ER). The primary structure contains an N-terminal hydrophobic leader sequence of 30-40 amino acids, which could represent a signal for translocation of the protein to the ER [, ]. The mature protein comprises around 165 residues, and contains a number of potential N-glycosylation sites. In vitro transport studies have demonstrated co-translational glycosylation []. Retention within the lumen of the ER correlates with an additional signal located at the C terminus, represented by the sequence Lys-Asp-Glu-Leu, known to be responsible for preventing secretion of proteins from the lumen of the ER in eukaryotic cells [, ].; GO: 0004872 receptor activity, 0005788 endoplasmic reticulum lumen; PDB: 1LR5_D 1LRH_D.
Probab=48.27 E-value=9.8 Score=39.27 Aligned_cols=41 Identities=32% Similarity=0.456 Sum_probs=24.1
Q ss_pred CccccCHHHHHHHHHHhCccceEEEeecCceeEecCCCcccccccc
Q 002330 821 QCFYLSSEHKKKLKEEFGVEPWTFEQKLGEAVFIPAGCPHQVRNLK 866 (935)
Q Consensus 821 Q~fYLt~ehk~rLkEEyGVepWtf~Q~lGEAVFIPAGCPHQVRNLk 866 (935)
.+.||...+ ++|.-+|=.|.=..+.-..||.+++|||.|-.
T Consensus 75 GTl~l~~~~-----~~~pG~pqef~~~pnSTf~IPvn~~HQv~NT~ 115 (167)
T PF02041_consen 75 GTLYLASSH-----EKYPGKPQEFPIFPNSTFHIPVNDAHQVWNTN 115 (167)
T ss_dssp EEEEE--SS-----SSS--S-EEEEE-TTEEEEE-TT--EEEE---
T ss_pred eEEEEeccc-----ccCCCCceEEEecCCCeEEeCCCCcceeecCC
Confidence 356776333 26999999999999999999999999999954
No 70
>smart00835 Cupin_1 Cupin. This family represents the conserved barrel domain of the 'cupin' superfamily ('cupa' is the Latin term for a small barrel). This family contains 11S and 7S plant seed storage proteins, and germins. Plant seed storage proteins provide the major nitrogen source for the developing plant.
Probab=47.88 E-value=14 Score=36.42 Aligned_cols=52 Identities=19% Similarity=0.365 Sum_probs=33.3
Q ss_pred cCCcccCccccCHHH-HHHHHHHhCccceEEEeecCceeEecCCCcccccccc
Q 002330 815 IHPIHDQCFYLSSEH-KKKLKEEFGVEPWTFEQKLGEAVFIPAGCPHQVRNLK 866 (935)
Q Consensus 815 ~dPIHDQ~fYLt~eh-k~rLkEEyGVepWtf~Q~lGEAVFIPAGCPHQVRNLk 866 (935)
.||-.++-+|+-... .-.+-++.|=+-+++.-..||+++||+|-+|+..|.-
T Consensus 47 ~H~~~~e~~~Vl~G~~~~~~~~~~~~~~~~~~l~~GD~~~ip~g~~H~~~n~~ 99 (146)
T smart00835 47 YHPRATELLYVVRGEGRVGVVDPNGNKVYDARLREGDVFVVPQGHPHFQVNSG 99 (146)
T ss_pred eCCCCCEEEEEEeCeEEEEEEeCCCCeEEEEEecCCCEEEECCCCEEEEEcCC
Confidence 455445555644322 1111122222557888899999999999999999974
No 71
>cd02336 ZZ_RSC8 Zinc finger, ZZ type. Zinc finger present in RSC8 and related proteins. RSC8 is a component of the RSC complex, which is closely related to the SWI/SNF complex and is involved in remodeling chromatin structure. The ZZ motif coordinates a zinc ion and most likely participates in ligand binding or molecular scaffolding.
Probab=47.34 E-value=9.3 Score=31.80 Aligned_cols=34 Identities=24% Similarity=0.453 Sum_probs=27.5
Q ss_pred cccCccccccccccccCcCC-cccchhchHHhhcC
Q 002330 332 YCNHCATSIIDLHRSCPKCS-YELCLTCCKEICEG 365 (935)
Q Consensus 332 yCDnCkTSI~D~HRSC~~Cs-yDLCL~CC~ELR~G 365 (935)
.||.|..-+...+-+|.++. ||||-.|..+-|-+
T Consensus 2 ~C~~Cg~D~t~vryh~~~~~~~dLC~~CF~~G~f~ 36 (45)
T cd02336 2 HCFTCGNDCTRVRYHNLKAKKYDLCPSCYQEGRFP 36 (45)
T ss_pred cccCCCCccCceEEEecCCCccccChHHHhCcCCC
Confidence 58888888877777788887 99999999986643
No 72
>KOG3899 consensus Uncharacterized conserved protein [Function unknown]
Probab=47.01 E-value=7.2 Score=43.79 Aligned_cols=44 Identities=27% Similarity=0.813 Sum_probs=30.2
Q ss_pred ceEecCcCC-CCcccHhHHhhhCCCCChhhh--------hccCCCCCCcccCcccccc
Q 002330 214 YVVPCGKCR-TKVYCIQCIKQWYPKMSELDV--------AEICPFCRRNCNCSVCLHT 262 (935)
Q Consensus 214 ~~v~C~~C~-r~~FC~~CL~~rY~e~~~edv--------~w~CP~CRgiCNCs~Clr~ 262 (935)
.-..|++|- |-.+|..||.+||-.- +++| .-.||.||. ++|.+.
T Consensus 316 ~ga~c~nc~crp~wc~~cla~~f~~r-q~~v~r~~~~~~~~~cp~cr~----~fci~d 368 (381)
T KOG3899|consen 316 IGAPCENCICRPLWCRSCLAQIFIGR-QDNVYRYEYHRGSAQCPTCRK----NFCIRD 368 (381)
T ss_pred cCCcccccccccHHHHHHHHHHHhhc-ccchhHHHHHhcCCCCcchhh----ceEEee
Confidence 346888865 5899999999999543 2222 367888877 355554
No 73
>TIGR03404 bicupin_oxalic bicupin, oxalate decarboxylase family. Members of this protein family are defined as bicupins as they have two copies of the cupin domain (pfam00190). Two different known activities for members of this family are oxalate decarboxylase (EC 4.1.1.2) and oxalate oxidase (EC 1.2.3.4), although the latter activity has more often been found in distantly related monocupin (germin) proteins.
Probab=46.51 E-value=14 Score=42.55 Aligned_cols=81 Identities=22% Similarity=0.345 Sum_probs=47.9
Q ss_pred CCcccCCcccCccccCHHHHHHHHHHhCc-----cceEEEeecCceeEecCCCccccccccccceecccccCccchHHHH
Q 002330 811 VEQVIHPIHDQCFYLSSEHKKKLKEEFGV-----EPWTFEQKLGEAVFIPAGCPHQVRNLKSCTKVAVDFVSPENVDECL 885 (935)
Q Consensus 811 v~~v~dPIHDQ~fYLt~ehk~rLkEEyGV-----epWtf~Q~lGEAVFIPAGCPHQVRNLkSCIKVAlDFVSPEnV~eC~ 885 (935)
.....||--+..+|+-.-.= +..| ...++.=..||++|||+|.+|.++|.-+--=+-+-+.+....+.-
T Consensus 258 ~~~H~H~~~~E~~yvl~G~~-----~~~v~d~~g~~~~~~l~~GD~~~iP~g~~H~i~N~G~e~l~fL~if~s~~~~~i- 331 (367)
T TIGR03404 258 RELHWHPNADEWQYFIQGQA-----RMTVFAAGGNARTFDYQAGDVGYVPRNMGHYVENTGDETLVFLEVFKADRFADV- 331 (367)
T ss_pred cCCeeCcCCCeEEEEEEEEE-----EEEEEecCCcEEEEEECCCCEEEECCCCeEEEEECCCCCEEEEEEECCCCCcee-
Confidence 34557777677666544322 1233 356677789999999999999999997643333333333322221
Q ss_pred HHHHHhhcCCcc
Q 002330 886 RLTKEFRLLPKN 897 (935)
Q Consensus 886 rLteEfR~Lp~~ 897 (935)
.|++=+..+|.+
T Consensus 332 ~l~~~l~~~p~~ 343 (367)
T TIGR03404 332 SLNQWLALTPPQ 343 (367)
T ss_pred EHHHHHhhCCHH
Confidence 245555555543
No 74
>TIGR00570 cdk7 CDK-activating kinase assembly factor MAT1. All proteins in this family for which functions are known are cyclin dependent protein kinases that are components of TFIIH, a complex that is involved in nucleotide excision repair and transcription initiation. Also known as MAT1 (menage a trois 1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=45.71 E-value=22 Score=40.38 Aligned_cols=46 Identities=20% Similarity=0.568 Sum_probs=30.8
Q ss_pred CCcccccccCC---CCceEecCcCCCCcccHhHHhhhCCCCChhhhhccCCCCCC
Q 002330 201 RIKCHQCMKSE---RKYVVPCGKCRTKVYCIQCIKQWYPKMSELDVAEICPFCRR 252 (935)
Q Consensus 201 ~~~CHQCrqk~---~~~~v~C~~C~r~~FC~~CL~~rY~e~~~edv~w~CP~CRg 252 (935)
..+|-.|.... ...+..=..|+ ..||..|+.+-+..-+ ..||.|+.
T Consensus 3 ~~~CP~Ck~~~y~np~~kl~i~~CG-H~~C~sCv~~l~~~~~-----~~CP~C~~ 51 (309)
T TIGR00570 3 DQGCPRCKTTKYRNPSLKLMVNVCG-HTLCESCVDLLFVRGS-----GSCPECDT 51 (309)
T ss_pred CCCCCcCCCCCccCcccccccCCCC-CcccHHHHHHHhcCCC-----CCCCCCCC
Confidence 36899998854 22111222699 9999999999875322 38997764
No 75
>COG5114 Histone acetyltransferase complex SAGA/ADA, subunit ADA2 [Chromatin structure and dynamics]
Probab=45.38 E-value=6.4 Score=44.60 Aligned_cols=31 Identities=32% Similarity=0.929 Sum_probs=27.1
Q ss_pred cccccCcccccccc-ccccCcC-CcccchhchH
Q 002330 330 RVYCNHCATSIIDL-HRSCPKC-SYELCLTCCK 360 (935)
Q Consensus 330 RvyCDnCkTSI~D~-HRSC~~C-syDLCL~CC~ 360 (935)
...||.|..-|.|. |-+|..| .|||||-|+-
T Consensus 5 k~hCdvC~~d~T~~~~i~C~eC~~~DLC~pCF~ 37 (432)
T COG5114 5 KIHCDVCFLDMTDLTFIKCNECPAVDLCLPCFV 37 (432)
T ss_pred eeeehHHHHhhhcceeeeeecccccceehhhhh
Confidence 45799999999986 5689999 9999999984
No 76
>COG3791 Uncharacterized conserved protein [Function unknown]
Probab=44.51 E-value=5.7 Score=39.33 Aligned_cols=15 Identities=40% Similarity=0.789 Sum_probs=12.3
Q ss_pred cccCccccccCCCcc
Q 002330 253 NCNCSVCLHTSGFIE 267 (935)
Q Consensus 253 iCNCs~Clr~~g~~~ 267 (935)
+|||+.|+|..|..-
T Consensus 26 ~ChCs~Crk~~G~~~ 40 (133)
T COG3791 26 ACHCSDCRKASGAAF 40 (133)
T ss_pred eeCchHhhhhhCCce
Confidence 899999999965443
No 77
>TIGR03214 ura-cupin putative allantoin catabolism protein. This model represents a protein containing a tandem arrangement of cupin domains (N-terminal part of pfam07883 and C-terminal more distantly related to pfam00190). This protein is found in the vicinity of genes involved in the catabolism of allantoin, a breakdown product of urate and sometimes of urate iteslf. The distribution of pathway components in the genomes in which this family is observed suggests that the function is linked to the allantoate catabolism to glyoxylate pathway (GenProp0686) since it is sometimes found in genomes lacking any elements of the xanthine-to-allantoin pathways (e.g. in Enterococcus faecalis).
Probab=43.77 E-value=16 Score=39.98 Aligned_cols=47 Identities=17% Similarity=0.240 Sum_probs=32.4
Q ss_pred CCcccCccccCHHHHHHHHHHhCccceEEEeecCceeEecCCCccccccccc
Q 002330 816 HPIHDQCFYLSSEHKKKLKEEFGVEPWTFEQKLGEAVFIPAGCPHQVRNLKS 867 (935)
Q Consensus 816 dPIHDQ~fYLt~ehk~rLkEEyGVepWtf~Q~lGEAVFIPAGCPHQVRNLkS 867 (935)
|+-.++-+|+-.---. .-+..-+++=..||+++||||.||..+|...
T Consensus 77 ~~g~ee~iyVl~G~l~-----v~~~g~~~~L~~Gd~~y~pa~~~H~~~N~~~ 123 (260)
T TIGR03214 77 GEGIETFLFVISGEVN-----VTAEGETHELREGGYAYLPPGSKWTLANAQA 123 (260)
T ss_pred CCceEEEEEEEeCEEE-----EEECCEEEEECCCCEEEECCCCCEEEEECCC
Confidence 3444555665443221 2345667777889999999999999999863
No 78
>KOG1814 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=43.50 E-value=36 Score=40.10 Aligned_cols=37 Identities=22% Similarity=0.670 Sum_probs=28.5
Q ss_pred cCCCcccc--cccC----CCCceEecCcCCCCcccHhHHhhhCC
Q 002330 199 LERIKCHQ--CMKS----ERKYVVPCGKCRTKVYCIQCIKQWYP 236 (935)
Q Consensus 199 ~~~~~CHQ--Crqk----~~~~~v~C~~C~r~~FC~~CL~~rY~ 236 (935)
.....|.. |+-- .-..++.|++|+ ..||.-|..+|.|
T Consensus 271 sdv~yCPr~~Cq~p~~~d~~~~l~~CskCn-FaFCtlCk~t~HG 313 (445)
T KOG1814|consen 271 SDVVYCPRACCQLPVKQDPGRALAICSKCN-FAFCTLCKLTWHG 313 (445)
T ss_pred cccccCChhhccCccccCchhhhhhhccCc-cHHHHHHHHhhcC
Confidence 34566766 4433 245689999999 9999999999998
No 79
>PF12678 zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This domain constitutes a conserved region found in proteins that participate in diverse functions relevant to chromosome metabolism and cell cycle control [].The domain contains 8 cysteine/ histidine residues which are proposed to be the conserved residues involved in zinc binding.; PDB: 4A0C_D 4A0L_I 4A0K_B 2ECL_A 1LDK_C 3RTR_F 3DQV_Y 1U6G_B 1LDJ_B 2HYE_D ....
Probab=42.43 E-value=15 Score=32.93 Aligned_cols=26 Identities=38% Similarity=1.216 Sum_probs=20.4
Q ss_pred CcCCCCcccHhHHhhhCCCCChhhhhccCCCCC
Q 002330 219 GKCRTKVYCIQCIKQWYPKMSELDVAEICPFCR 251 (935)
Q Consensus 219 ~~C~r~~FC~~CL~~rY~e~~~edv~w~CP~CR 251 (935)
..|+ ..|-..||.+|.... ..||.||
T Consensus 48 ~~C~-H~FH~~Ci~~Wl~~~------~~CP~CR 73 (73)
T PF12678_consen 48 GPCG-HIFHFHCISQWLKQN------NTCPLCR 73 (73)
T ss_dssp ETTS-EEEEHHHHHHHHTTS------SB-TTSS
T ss_pred cccC-CCEEHHHHHHHHhcC------CcCCCCC
Confidence 3588 999999999998543 2999997
No 80
>PF01238 PMI_typeI: Phosphomannose isomerase type I; InterPro: IPR001250 Mannose-6-phosphate isomerase or phosphomannose isomerase (5.3.1.8 from EC) (PMI) is the enzyme that catalyses the interconversion of mannose-6-phosphate and fructose-6-phosphate. In eukaryotes PMI is involved in the synthesis of GDP-mannose, a constituent of N- and O-linked glycans and GPI anchors and in prokaryotes it participates in a variety of pathways, including capsular polysaccharide biosynthesis and D-mannose metabolism. PMI's belong to the cupin superfamily whose functions range from isomerase and epimerase activities involved in the modification of cell wall carbohydrates in bacteria and plants, to non-enzymatic storage proteins in plant seeds, and transcription factors linked to congenital baldness in mammals []. Three classes of PMI have been defined []. Type I includes eukaryotic PMI and the enzyme encoded by the manA gene in enterobacteria. PMI has a bound zinc ion, which is essential for activity. A crystal structure of PMI from Candida albicans shows that the enzyme has three distinct domains []. The active site lies in the central domain, contains a single essential zinc atom, and forms a deep, open cavity of suitable dimensions to contain M6P or F6P The central domain is flanked by a helical domain on one side and a jelly-roll like domain on the other.; GO: 0004476 mannose-6-phosphate isomerase activity, 0008270 zinc ion binding, 0005975 carbohydrate metabolic process; PDB: 1PMI_A 1QWR_B 1ZX5_A 3H1Y_A 2WFP_A 3H1M_A 3H1W_A.
Probab=41.72 E-value=9.2 Score=44.02 Aligned_cols=18 Identities=56% Similarity=0.973 Sum_probs=13.8
Q ss_pred EeecCceeEecCCCcccc
Q 002330 845 EQKLGEAVFIPAGCPHQV 862 (935)
Q Consensus 845 ~Q~lGEAVFIPAGCPHQV 862 (935)
.=.+|||+|+|||.||-.
T Consensus 253 ~L~pGeaifl~a~~~HAY 270 (373)
T PF01238_consen 253 ELQPGEAIFLPAGEPHAY 270 (373)
T ss_dssp EE-TT-EEEEHTTHHEEE
T ss_pred EecCCceEEecCCCcccc
Confidence 335999999999999983
No 81
>PRK01191 rpl24p 50S ribosomal protein L24P; Validated
Probab=41.01 E-value=13 Score=36.99 Aligned_cols=42 Identities=24% Similarity=0.426 Sum_probs=37.2
Q ss_pred cCCcccCccccCHHHHHHHHHHhCccceEEEeecCceeEecCCC
Q 002330 815 IHPIHDQCFYLSSEHKKKLKEEFGVEPWTFEQKLGEAVFIPAGC 858 (935)
Q Consensus 815 ~dPIHDQ~fYLt~ehk~rLkEEyGVepWtf~Q~lGEAVFIPAGC 858 (935)
.-|.|...-.+.+.+=+.|+++|||..|.+ +.||-|.|=||-
T Consensus 17 ~a~~~~r~k~msa~LSkeLr~~y~ir~~~I--kkGD~V~VisG~ 58 (120)
T PRK01191 17 NAPLHLRQKLMSAPLSKELREKYGIRSLPV--RKGDTVKVMRGD 58 (120)
T ss_pred cCCHHHHHHHhcCccCHHHHHHhCCccceE--eCCCEEEEeecC
Confidence 467888888899999999999999999977 589999999985
No 82
>PTZ00303 phosphatidylinositol kinase; Provisional
Probab=40.48 E-value=13 Score=46.38 Aligned_cols=33 Identities=21% Similarity=0.526 Sum_probs=28.2
Q ss_pred CCcccccccCCCC-------ceEecCcCCCCcccHhHHhhh
Q 002330 201 RIKCHQCMKSERK-------YVVPCGKCRTKVYCIQCIKQW 234 (935)
Q Consensus 201 ~~~CHQCrqk~~~-------~~v~C~~C~r~~FC~~CL~~r 234 (935)
...|+.|.++-.. +.-.|++|+ ..||..|-.++
T Consensus 460 SdtC~~C~kkFfSlsK~L~~RKHHCRkCG-rVFC~~CSSnR 499 (1374)
T PTZ00303 460 SDSCPSCGRAFISLSRPLGTRAHHCRSCG-IRLCVFCITKR 499 (1374)
T ss_pred CCcccCcCCcccccccccccccccccCCc-cccCccccCCc
Confidence 4789999998742 577899999 99999999876
No 83
>cd00065 FYVE FYVE domain; Zinc-binding domain; targets proteins to membrane lipids via interaction with phosphatidylinositol-3-phosphate, PI3P; present in Fab1, YOTB, Vac1, and EEA1;
Probab=40.31 E-value=14 Score=30.66 Aligned_cols=35 Identities=23% Similarity=0.666 Sum_probs=27.5
Q ss_pred CCcccccccCC--CCceEecCcCCCCcccHhHHhhhCC
Q 002330 201 RIKCHQCMKSE--RKYVVPCGKCRTKVYCIQCIKQWYP 236 (935)
Q Consensus 201 ~~~CHQCrqk~--~~~~v~C~~C~r~~FC~~CL~~rY~ 236 (935)
...|+.|.++= ..+...|..|+ ..||..|...+-.
T Consensus 2 ~~~C~~C~~~F~~~~rk~~Cr~Cg-~~~C~~C~~~~~~ 38 (57)
T cd00065 2 ASSCMGCGKPFTLTRRRHHCRNCG-RIFCSKCSSNRIP 38 (57)
T ss_pred cCcCcccCccccCCccccccCcCc-CCcChHHcCCeee
Confidence 35788998654 35578999999 8899999997744
No 84
>PF02938 GAD: GAD domain; InterPro: IPR004115 This entry represetns an 2 layer alpha/beta insertion domain found in some glutamyl-tRNA amidotransferases and aspartyl tRNA synthetases [, ]. The function of this domain is not yet known.; GO: 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0005737 cytoplasm; PDB: 1ZQ1_D 1EQR_B 1IL2_B 1C0A_A 1L0W_A 1G51_B 1EFW_B 2D6F_D.
Probab=40.14 E-value=10 Score=35.43 Aligned_cols=41 Identities=34% Similarity=0.570 Sum_probs=32.1
Q ss_pred ccCCcccCccccCHHHHHHHHHHhCccceEEEeecCceeEecCCCcccccc
Q 002330 814 VIHPIHDQCFYLSSEHKKKLKEEFGVEPWTFEQKLGEAVFIPAGCPHQVRN 864 (935)
Q Consensus 814 v~dPIHDQ~fYLt~ehk~rLkEEyGVepWtf~Q~lGEAVFIPAGCPHQVRN 864 (935)
...||-. ||+++.+++|.+.+|.++ ||+||+=||-.+.|++
T Consensus 53 ~~s~i~k---fl~e~~~~~l~~~~~a~~-------GD~ll~~Ag~~~~v~~ 93 (95)
T PF02938_consen 53 LKSPIAK---FLSEEELKALIERLGAKP-------GDLLLFVAGKKEIVNK 93 (95)
T ss_dssp EECTTCC---CCHHHHHHHHHHHTT--T-------TEEEEEEEESHHHHHH
T ss_pred ccCcccc---cCCHHHHHHHHHHhCCCC-------CCEEEEECCCHHHHHh
Confidence 3455543 599999999999999985 9999999999888764
No 85
>PRK11171 hypothetical protein; Provisional
Probab=36.13 E-value=20 Score=39.36 Aligned_cols=28 Identities=25% Similarity=0.372 Sum_probs=23.3
Q ss_pred ccceEEEeecCceeEecCCCcccccccc
Q 002330 839 VEPWTFEQKLGEAVFIPAGCPHQVRNLK 866 (935)
Q Consensus 839 VepWtf~Q~lGEAVFIPAGCPHQVRNLk 866 (935)
+..=++.=..||.|+||+|.||+.+|.-
T Consensus 98 ~~g~~~~L~~GDsi~~p~~~~H~~~N~g 125 (266)
T PRK11171 98 LEGKTHALSEGGYAYLPPGSDWTLRNAG 125 (266)
T ss_pred ECCEEEEECCCCEEEECCCCCEEEEECC
Confidence 3444666778999999999999999975
No 86
>KOG1280 consensus Uncharacterized conserved protein containing ZZ-type Zn-finger [General function prediction only]
Probab=35.11 E-value=15 Score=42.27 Aligned_cols=37 Identities=32% Similarity=0.922 Sum_probs=29.8
Q ss_pred CCCCcccccCcccccccccc-ccCcCC-cccchhchHHh
Q 002330 326 GNDERVYCNHCATSIIDLHR-SCPKCS-YELCLTCCKEI 362 (935)
Q Consensus 326 ~~DERvyCDnCkTSI~D~HR-SC~~Cs-yDLCL~CC~EL 362 (935)
+.-|+|-||.|..-=|-|.| -|-.|+ ||||-+|+..-
T Consensus 4 ~rHe~v~CdgC~k~~~t~rrYkCL~C~DyDlC~sCyen~ 42 (381)
T KOG1280|consen 4 SRHEGVSCDGCGKTAFTFRRYKCLRCSDYDLCFSCYENG 42 (381)
T ss_pred CCcCCceeccccccceeeeeeEeeeecchhHHHHHhhcC
Confidence 45689999999887777776 488885 99999998653
No 87
>KOG2107 consensus Uncharacterized conserved protein, contains double-stranded beta-helix domain [Function unknown]
Probab=34.22 E-value=28 Score=36.58 Aligned_cols=56 Identities=23% Similarity=0.460 Sum_probs=42.3
Q ss_pred hHHHHHHHHHHHhhccccCCCCCcccCCcccCccccCHHHHHHHHHHhCccceEEEe-ecCceeEecCCCcccc
Q 002330 790 PKLEAYLRKHFKEFRHVYCSPVEQVIHPIHDQCFYLSSEHKKKLKEEFGVEPWTFEQ-KLGEAVFIPAGCPHQV 862 (935)
Q Consensus 790 pKLreyL~kh~~Ef~h~~~~pv~~v~dPIHDQ~fYLt~ehk~rLkEEyGVepWtf~Q-~lGEAVFIPAGCPHQV 862 (935)
+||..|...|..++ ..+-=|-+++-|.|.+.+. +-|-=.+ .-||-|+||||.=|--
T Consensus 80 eKvk~FfEEhlh~d---------eeiR~il~GtgYfDVrd~d--------d~WIRi~vekGDlivlPaGiyHRF 136 (179)
T KOG2107|consen 80 EKVKSFFEEHLHED---------EEIRYILEGTGYFDVRDKD--------DQWIRIFVEKGDLIVLPAGIYHRF 136 (179)
T ss_pred HHHHHHHHHhcCch---------hheEEEeecceEEeeccCC--------CCEEEEEEecCCEEEecCcceeee
Confidence 68888888776654 2345577889999988775 6776554 4699999999998864
No 88
>PRK13264 3-hydroxyanthranilate 3,4-dioxygenase; Provisional
Probab=34.01 E-value=29 Score=36.62 Aligned_cols=44 Identities=16% Similarity=0.286 Sum_probs=38.1
Q ss_pred cceEEEeecCceeEecCCCccccccccccceecccccCccchHH
Q 002330 840 EPWTFEQKLGEAVFIPAGCPHQVRNLKSCTKVAVDFVSPENVDE 883 (935)
Q Consensus 840 epWtf~Q~lGEAVFIPAGCPHQVRNLkSCIKVAlDFVSPEnV~e 883 (935)
+..++.=+.||..+||+|.||..+.-..||-+.+.=..|+..-.
T Consensus 74 ~~~~v~L~eGd~fllP~gvpHsP~r~~~tv~LviE~~r~~~~~d 117 (177)
T PRK13264 74 KRRDVPIREGEMFLLPPHVPHSPQREAGSIGLVIERKRPEGELD 117 (177)
T ss_pred ceeeEEECCCCEEEeCCCCCcCCccCCCeEEEEEEeCCCCCCcc
Confidence 34678889999999999999999889999999988888886554
No 89
>smart00504 Ubox Modified RING finger domain. Modified RING finger domain, without the full complement of Zn2+-binding ligands. Probable involvement in E2-dependent ubiquitination.
Probab=33.94 E-value=39 Score=28.30 Aligned_cols=42 Identities=14% Similarity=0.273 Sum_probs=29.6
Q ss_pred cccccccCCCCceEecCcCCCCcccHhHHhhhCCCCChhhhhccCCCCCCc
Q 002330 203 KCHQCMKSERKYVVPCGKCRTKVYCIQCIKQWYPKMSELDVAEICPFCRRN 253 (935)
Q Consensus 203 ~CHQCrqk~~~~~v~C~~C~r~~FC~~CL~~rY~e~~~edv~w~CP~CRgi 253 (935)
.|--|..--...++ ..|+ ..||..||..|..+ ...||.|+..
T Consensus 3 ~Cpi~~~~~~~Pv~--~~~G-~v~~~~~i~~~~~~------~~~cP~~~~~ 44 (63)
T smart00504 3 LCPISLEVMKDPVI--LPSG-QTYERRAIEKWLLS------HGTDPVTGQP 44 (63)
T ss_pred CCcCCCCcCCCCEE--CCCC-CEEeHHHHHHHHHH------CCCCCCCcCC
Confidence 45566655444433 4688 89999999999853 4589998763
No 90
>PF01363 FYVE: FYVE zinc finger; InterPro: IPR000306 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The FYVE zinc finger is named after four proteins that it has been found in: Fab1, YOTB/ZK632.12, Vac1, and EEA1. The FYVE finger has been shown to bind two zinc ions []. The FYVE finger has eight potential zinc coordinating cysteine positions. Many members of this family also include two histidines in a motif R+HHC+XCG, where + represents a charged residue and X any residue. FYVE-type domains are divided into two known classes: FYVE domains that specifically bind to phosphatidylinositol 3-phosphate in lipid bilayers and FYVE-related domains of undetermined function []. Those that bind to phosphatidylinositol 3-phosphate are often found in proteins targeted to lipid membranes that are involved in regulating membrane traffic [, , ]. Most FYVE domains target proteins to endosomes by binding specifically to phosphatidylinositol-3-phosphate at the membrane surface. By contrast, the CARP2 FYVE-like domain is not optimized to bind to phosphoinositides or insert into lipid bilayers. FYVE domains are distinguished from other zinc fingers by three signature sequences: an N-terminal WxxD motif, a basic R(R/K)HHCR patch, and a C-terminal RVC motif. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0046872 metal ion binding; PDB: 1HYI_A 1JOC_B 1HYJ_A 1DVP_A 3ZYQ_A 4AVX_A 1VFY_A 3T7L_A 1X4U_A 1WFK_A ....
Probab=33.75 E-value=12 Score=32.44 Aligned_cols=37 Identities=30% Similarity=0.565 Sum_probs=22.5
Q ss_pred cCCCcccccccCC--CCceEecCcCCCCcccHhHHhhhCC
Q 002330 199 LERIKCHQCMKSE--RKYVVPCGKCRTKVYCIQCIKQWYP 236 (935)
Q Consensus 199 ~~~~~CHQCrqk~--~~~~v~C~~C~r~~FC~~CL~~rY~ 236 (935)
.....|..|.++= ..+...|+.|+ ..||..|..++..
T Consensus 7 ~~~~~C~~C~~~F~~~~rrhhCr~CG-~~vC~~Cs~~~~~ 45 (69)
T PF01363_consen 7 SEASNCMICGKKFSLFRRRHHCRNCG-RVVCSSCSSQRIP 45 (69)
T ss_dssp GG-SB-TTT--B-BSSS-EEE-TTT---EEECCCS-EEEE
T ss_pred CCCCcCcCcCCcCCCceeeEccCCCC-CEECCchhCCEEc
Confidence 4578899999876 46788999999 9999999987764
No 91
>COG5574 PEX10 RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=33.52 E-value=22 Score=39.58 Aligned_cols=48 Identities=33% Similarity=0.971 Sum_probs=36.8
Q ss_pred cCCCcccccccCCCCceEecCcCCCCcccHhHHhh-hCCCCChhhhhccCCCCCCcc
Q 002330 199 LERIKCHQCMKSERKYVVPCGKCRTKVYCIQCIKQ-WYPKMSELDVAEICPFCRRNC 254 (935)
Q Consensus 199 ~~~~~CHQCrqk~~~~~v~C~~C~r~~FC~~CL~~-rY~e~~~edv~w~CP~CRgiC 254 (935)
.+...|-=|--... .-.|+-|+ ..||-.||.- |--+-+ ..||.||.-|
T Consensus 213 ~~d~kC~lC~e~~~--~ps~t~Cg-HlFC~~Cl~~~~t~~k~-----~~CplCRak~ 261 (271)
T COG5574 213 LADYKCFLCLEEPE--VPSCTPCG-HLFCLSCLLISWTKKKY-----EFCPLCRAKV 261 (271)
T ss_pred ccccceeeeecccC--Cccccccc-chhhHHHHHHHHHhhcc-----ccCchhhhhc
Confidence 55688999987764 66899999 9999999997 543322 2699999754
No 92
>PF10272 Tmpp129: Putative transmembrane protein precursor; InterPro: IPR018801 This entry consists of proteins conserved from worms to humans. They are purported to be transmembrane protein-precursors but their function is unknown.
Probab=33.45 E-value=36 Score=39.51 Aligned_cols=44 Identities=9% Similarity=0.009 Sum_probs=35.7
Q ss_pred ccccCCCChhHHHHHhhhHhhhhcccCCCccccccCCCCccccc
Q 002330 114 MSEELDYDAEEIALIRIRERRRSRRLEPDGAMIKTNPHKGRQKI 157 (935)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~ 157 (935)
+-+.++.--++.+..+.++|=+..+.-..++-+.-.-.++|-+.
T Consensus 208 ~v~~F~Irlns~~y~~L~~kL~~PI~~~~ni~i~~tl~drF~e~ 251 (358)
T PF10272_consen 208 GVKPFTIRLNSSEYRDLREKLRAPIRIARNIVIHQTLSDRFVEA 251 (358)
T ss_pred CCcceEEEEcHHHHHHHHHHhhCccccCCCceECCCHHHHHHHH
Confidence 44667777789999999999999999999998887777877433
No 93
>TIGR03037 anthran_nbaC 3-hydroxyanthranilate 3,4-dioxygenase. Members of this protein family, from both bacteria and eukaryotes, are the enzyme 3-hydroxyanthranilate 3,4-dioxygenase. This enzyme acts on the tryptophan metabolite 3-hydroxyanthranilate and produces 2-amino-3-carboxymuconate semialdehyde, which can rearrange spontaneously to quinolinic acid and feed into nicotinamide biosynthesis, or undergo further enzymatic degradation.
Probab=33.43 E-value=30 Score=35.99 Aligned_cols=45 Identities=11% Similarity=0.228 Sum_probs=39.7
Q ss_pred cceEEEeecCceeEecCCCccccccccccceecccccCccchHHH
Q 002330 840 EPWTFEQKLGEAVFIPAGCPHQVRNLKSCTKVAVDFVSPENVDEC 884 (935)
Q Consensus 840 epWtf~Q~lGEAVFIPAGCPHQVRNLkSCIKVAlDFVSPEnV~eC 884 (935)
+..++.=..||..+||+|.||..+--..||=+.+.=..|++...+
T Consensus 68 ~~~~v~L~eGd~flvP~gvpHsP~r~~~t~~LvIE~~r~~~~~d~ 112 (159)
T TIGR03037 68 KREDVPIREGDIFLLPPHVPHSPQRPAGSIGLVIERKRPQGELDG 112 (159)
T ss_pred cEEEEEECCCCEEEeCCCCCcccccCCCcEEEEEEeCCCCCCCcc
Confidence 356788889999999999999998899999999999999987663
No 94
>PRK04023 DNA polymerase II large subunit; Validated
Probab=33.38 E-value=27 Score=45.06 Aligned_cols=23 Identities=35% Similarity=0.622 Sum_probs=19.2
Q ss_pred ccCCCcccccccCCCCceEecCcCC
Q 002330 198 ELERIKCHQCMKSERKYVVPCGKCR 222 (935)
Q Consensus 198 k~~~~~CHQCrqk~~~~~v~C~~C~ 222 (935)
....+.|..|.+.+. ...|.+|+
T Consensus 623 EVg~RfCpsCG~~t~--~frCP~CG 645 (1121)
T PRK04023 623 EIGRRKCPSCGKETF--YRRCPFCG 645 (1121)
T ss_pred cccCccCCCCCCcCC--cccCCCCC
Confidence 467789999999974 57999998
No 95
>KOG3905 consensus Dynein light intermediate chain [Cell motility]
Probab=32.90 E-value=19 Score=41.54 Aligned_cols=24 Identities=38% Similarity=0.419 Sum_probs=15.1
Q ss_pred HhCccceEEEe-ecCceeEecCCCc
Q 002330 836 EFGVEPWTFEQ-KLGEAVFIPAGCP 859 (935)
Q Consensus 836 EyGVepWtf~Q-~lGEAVFIPAGCP 859 (935)
-||.---|=-| -.-||||||||--
T Consensus 289 ~yG~~fttpAlVVEkdaVfIPAGWD 313 (473)
T KOG3905|consen 289 SYGFPFTTPALVVEKDAVFIPAGWD 313 (473)
T ss_pred hcCcccCCcceEeecceeEeccCCC
Confidence 36654333333 3469999999963
No 96
>KOG3799 consensus Rab3 effector RIM1 and related proteins, contain Rab3a binding domain [Intracellular trafficking, secretion, and vesicular transport]
Probab=32.85 E-value=12 Score=37.96 Aligned_cols=55 Identities=20% Similarity=0.476 Sum_probs=38.2
Q ss_pred hhhccCCCcccccccCCC--CceEecCcCCCCcccHhHHhhhCCCCChhhhhccCCCCCC
Q 002330 195 QEKELERIKCHQCMKSER--KYVVPCGKCRTKVYCIQCIKQWYPKMSELDVAEICPFCRR 252 (935)
Q Consensus 195 k~~k~~~~~CHQCrqk~~--~~~v~C~~C~r~~FC~~CL~~rY~e~~~edv~w~CP~CRg 252 (935)
|+..+...+||-|.+.+. +--..|.-|+ .+||.+|--+--. --..|.|.|-.|+.
T Consensus 59 KaGv~ddatC~IC~KTKFADG~GH~C~YCq-~r~CARCGGrv~l--rsNKv~wvcnlc~k 115 (169)
T KOG3799|consen 59 KAGVGDDATCGICHKTKFADGCGHNCSYCQ-TRFCARCGGRVSL--RSNKVMWVCNLCRK 115 (169)
T ss_pred ccccCcCcchhhhhhcccccccCcccchhh-hhHHHhcCCeeee--ccCceEEeccCCcH
Confidence 344567789999997763 3346788899 9999998543221 11367899888765
No 97
>PF03107 C1_2: C1 domain; InterPro: IPR004146 This short domain is rich in cysteines and histidines. The pattern of conservation is similar to that found in DAG_PE-bind (IPR002219 from INTERPRO), therefore we have termed this domain DC1 for divergent C1 domain. This domain probably also binds to two zinc ions. The function of proteins with this domain is uncertain, however this domain may bind to molecules such as diacylglycerol. This family are found in plant proteins.
Probab=32.67 E-value=25 Score=26.55 Aligned_cols=27 Identities=26% Similarity=0.892 Sum_probs=22.4
Q ss_pred cccCcccccccc-ccccCcCCcccchhc
Q 002330 332 YCNHCATSIIDL-HRSCPKCSYELCLTC 358 (935)
Q Consensus 332 yCDnCkTSI~D~-HRSC~~CsyDLCL~C 358 (935)
-|+.|...+-.+ --+|..|.|.|-+.|
T Consensus 2 ~C~~C~~~~~~~~~Y~C~~c~f~lh~~C 29 (30)
T PF03107_consen 2 WCDVCRRKIDGFYFYHCSECCFTLHVRC 29 (30)
T ss_pred CCCCCCCCcCCCEeEEeCCCCCeEcCcc
Confidence 388888888888 888898889888876
No 98
>COG5219 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=32.65 E-value=17 Score=46.36 Aligned_cols=33 Identities=24% Similarity=0.953 Sum_probs=25.8
Q ss_pred eEecCcCCCCcccHhHHhhhCCCCChhhhhccCCCCCC
Q 002330 215 VVPCGKCRTKVYCIQCIKQWYPKMSELDVAEICPFCRR 252 (935)
Q Consensus 215 ~v~C~~C~r~~FC~~CL~~rY~e~~~edv~w~CP~CRg 252 (935)
--+|..|. ..|=+.||++||.- --.-.||.||-
T Consensus 1488 skrC~TCk-nKFH~~CLyKWf~S----s~~s~CPlCRs 1520 (1525)
T COG5219 1488 SKRCATCK-NKFHTRCLYKWFAS----SARSNCPLCRS 1520 (1525)
T ss_pred ccccchhh-hhhhHHHHHHHHHh----cCCCCCCcccc
Confidence 34788888 78999999999952 33468999983
No 99
>PRK10371 DNA-binding transcriptional regulator MelR; Provisional
Probab=32.56 E-value=31 Score=38.13 Aligned_cols=33 Identities=18% Similarity=0.322 Sum_probs=27.9
Q ss_pred hCccceEEEeecCceeEecCCCccccccccccc
Q 002330 837 FGVEPWTFEQKLGEAVFIPAGCPHQVRNLKSCT 869 (935)
Q Consensus 837 yGVepWtf~Q~lGEAVFIPAGCPHQVRNLkSCI 869 (935)
|-|.+-++.-..||+||||+|.||+......|-
T Consensus 59 ~~i~g~~~~l~~Gd~ili~s~~~H~~~~~~~~~ 91 (302)
T PRK10371 59 YLINNEKVQINQGHITLFWACTPHQLTDPGNCR 91 (302)
T ss_pred EEECCEEEEEcCCcEEEEecCCcccccccCCCc
Confidence 667888899999999999999999987655553
No 100
>smart00064 FYVE Protein present in Fab1, YOTB, Vac1, and EEA1. The FYVE zinc finger is named after four proteins where it was first found: Fab1, YOTB/ZK632.12, Vac1, and EEA1. The FYVE finger has been shown to bind two Zn2+ ions. The FYVE finger has eight potential zinc coordinating cysteine positions. The FYVE finger is structurally related to the PF12861 zf-Apc11: Anaphase-promoting complex subunit 11 RING-H2 finger
Probab=31.85 E-value=40 Score=31.81 Aligned_cols=46 Identities=26% Similarity=0.649 Sum_probs=32.8
Q ss_pred CcccccccCCCC-ceEecCcCCCCcccHhHHhhhCCCCChhhhhccCCCCCC
Q 002330 202 IKCHQCMKSERK-YVVPCGKCRTKVYCIQCIKQWYPKMSELDVAEICPFCRR 252 (935)
Q Consensus 202 ~~CHQCrqk~~~-~~v~C~~C~r~~FC~~CL~~rY~e~~~edv~w~CP~CRg 252 (935)
..|..|+-.... .++.+ .|+ ..|=+.||.+|.... ..+-.||-||.
T Consensus 33 g~Cp~Ck~Pgd~Cplv~g-~C~-H~FH~hCI~kWl~~~---~~~~~CPmCR~ 79 (85)
T PF12861_consen 33 GCCPDCKFPGDDCPLVWG-KCS-HNFHMHCILKWLSTQ---SSKGQCPMCRQ 79 (85)
T ss_pred cCCCCccCCCCCCceeec-cCc-cHHHHHHHHHHHccc---cCCCCCCCcCC
Confidence 456777765532 34444 498 899999999998742 34679999996
No 102
>PF15446 zf-PHD-like: PHD/FYVE-zinc-finger like domain
Probab=30.45 E-value=53 Score=34.64 Aligned_cols=50 Identities=20% Similarity=0.436 Sum_probs=37.2
Q ss_pred ccccccc----CCCCceEecCcCCCCcccHhHHhhhCCCC------ChhhhhccCCCCCCc
Q 002330 203 KCHQCMK----SERKYVVPCGKCRTKVYCIQCIKQWYPKM------SELDVAEICPFCRRN 253 (935)
Q Consensus 203 ~CHQCrq----k~~~~~v~C~~C~r~~FC~~CL~~rY~e~------~~edv~w~CP~CRgi 253 (935)
+|+.|.. ..++.+|.|+.|. ..|=-.||-.|-.-. ..++..-+|-+|.|+
T Consensus 1 ~C~~C~~~g~~~~kG~Lv~CQGCs-~sYHk~CLG~Rs~ReHlVTKVg~d~FVLQCr~Cig~ 60 (175)
T PF15446_consen 1 TCDTCGYEGDDRNKGPLVYCQGCS-SSYHKACLGPRSQREHLVTKVGDDDFVLQCRRCIGI 60 (175)
T ss_pred CcccccCCCCCccCCCeEEcCccC-hHHHhhhcCCccccceeeEEEcCCceEEechhhcCh
Confidence 5899953 2368899999999 888888998876421 234566789999885
No 103
>PRK14559 putative protein serine/threonine phosphatase; Provisional
Probab=29.85 E-value=30 Score=42.97 Aligned_cols=33 Identities=36% Similarity=1.020 Sum_probs=23.6
Q ss_pred CCCcccccCccccccccccccCcCCcc------cchhchHH
Q 002330 327 NDERVYCNHCATSIIDLHRSCPKCSYE------LCLTCCKE 361 (935)
Q Consensus 327 ~DERvyCDnCkTSI~D~HRSC~~CsyD------LCL~CC~E 361 (935)
++.--||.+|.+++. +..|++|+.+ +|..|=..
T Consensus 12 ~~~akFC~~CG~~l~--~~~Cp~CG~~~~~~~~fC~~CG~~ 50 (645)
T PRK14559 12 PNNNRFCQKCGTSLT--HKPCPQCGTEVPVDEAHCPNCGAE 50 (645)
T ss_pred CCCCccccccCCCCC--CCcCCCCCCCCCcccccccccCCc
Confidence 455568888888874 4678888887 77777444
No 104
>COG5034 TNG2 Chromatin remodeling protein, contains PhD zinc finger [Chromatin structure and dynamics]
Probab=29.46 E-value=29 Score=38.57 Aligned_cols=49 Identities=24% Similarity=0.678 Sum_probs=36.9
Q ss_pred ccCCCcccccccCCCCceEecCc--CCCCcccHhHHhhhCCCCChh-hhhccCCCCCC
Q 002330 198 ELERIKCHQCMKSERKYVVPCGK--CRTKVYCIQCIKQWYPKMSEL-DVAEICPFCRR 252 (935)
Q Consensus 198 k~~~~~CHQCrqk~~~~~v~C~~--C~r~~FC~~CL~~rY~e~~~e-dv~w~CP~CRg 252 (935)
.++...| .|+|-..+.+|-|-+ |.+.-|=++|+- +.+- .-.|-||-|+.
T Consensus 218 e~e~lYC-fCqqvSyGqMVaCDn~nCkrEWFH~~CVG-----Lk~pPKG~WYC~eCk~ 269 (271)
T COG5034 218 EGEELYC-FCQQVSYGQMVACDNANCKREWFHLECVG-----LKEPPKGKWYCPECKK 269 (271)
T ss_pred cCceeEE-EecccccccceecCCCCCchhheeccccc-----cCCCCCCcEeCHHhHh
Confidence 4677888 599999999999986 998877777764 3221 23599999975
No 105
>PRK14892 putative transcription elongation factor Elf1; Provisional
Probab=29.24 E-value=27 Score=33.61 Aligned_cols=28 Identities=18% Similarity=0.382 Sum_probs=22.3
Q ss_pred CCCCcccccCccccccc-------cccccCcCCcc
Q 002330 326 GNDERVYCNHCATSIID-------LHRSCPKCSYE 353 (935)
Q Consensus 326 ~~DERvyCDnCkTSI~D-------~HRSC~~CsyD 353 (935)
...--+.|.+|....+. .|+.|++|+|-
T Consensus 17 klpt~f~CP~Cge~~v~v~~~k~~~h~~C~~CG~y 51 (99)
T PRK14892 17 KLPKIFECPRCGKVSISVKIKKNIAIITCGNCGLY 51 (99)
T ss_pred CCCcEeECCCCCCeEeeeecCCCcceEECCCCCCc
Confidence 33456779999977776 79999999983
No 106
>KOG1039 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=28.59 E-value=25 Score=40.50 Aligned_cols=31 Identities=35% Similarity=1.186 Sum_probs=24.4
Q ss_pred cCCCCcccHhHHhhhC--CCCChhhhhccCCCCCC
Q 002330 220 KCRTKVYCIQCIKQWY--PKMSELDVAEICPFCRR 252 (935)
Q Consensus 220 ~C~r~~FC~~CL~~rY--~e~~~edv~w~CP~CRg 252 (935)
+|. -.||..||.+|= ... ...+...||.||.
T Consensus 186 nC~-H~~Cl~Cir~wr~~~q~-~~~~sksCP~CRv 218 (344)
T KOG1039|consen 186 NCN-HSFCLNCIRKWRQATQF-ESKTSKSCPFCRV 218 (344)
T ss_pred Ccc-hhhhhcHhHhhhhhhcc-ccccccCCCcccC
Confidence 488 899999999996 322 3356789999997
No 107
>PF05899 Cupin_3: Protein of unknown function (DUF861); InterPro: IPR008579 The function of the proteins in this entry are unknown. They contain the conserved barrel domain of the 'cupin' superfamily and members are specific to plants and bacteria.; PDB: 1RC6_A 3MYX_A 1O5U_A 2K9Z_A 1LKN_A 3ES4_A 1SFN_B 3BCW_A.
Probab=27.70 E-value=32 Score=30.72 Aligned_cols=17 Identities=41% Similarity=0.714 Sum_probs=12.7
Q ss_pred EEEeecCceeEecCCCc
Q 002330 843 TFEQKLGEAVFIPAGCP 859 (935)
Q Consensus 843 tf~Q~lGEAVFIPAGCP 859 (935)
+..=..||+||||+|..
T Consensus 45 ~~~~~aGD~~~~p~G~~ 61 (74)
T PF05899_consen 45 TVTFKAGDAFFLPKGWT 61 (74)
T ss_dssp EEEEETTEEEEE-TTEE
T ss_pred EEEEcCCcEEEECCCCE
Confidence 34457899999999984
No 108
>TIGR03404 bicupin_oxalic bicupin, oxalate decarboxylase family. Members of this protein family are defined as bicupins as they have two copies of the cupin domain (pfam00190). Two different known activities for members of this family are oxalate decarboxylase (EC 4.1.1.2) and oxalate oxidase (EC 1.2.3.4), although the latter activity has more often been found in distantly related monocupin (germin) proteins.
Probab=27.59 E-value=52 Score=38.09 Aligned_cols=40 Identities=18% Similarity=0.425 Sum_probs=28.5
Q ss_pred cceEEEeecCceeEecCCCccccccccccceecc-----cccCcc
Q 002330 840 EPWTFEQKLGEAVFIPAGCPHQVRNLKSCTKVAV-----DFVSPE 879 (935)
Q Consensus 840 epWtf~Q~lGEAVFIPAGCPHQVRNLkSCIKVAl-----DFVSPE 879 (935)
+-+++.=..||.++||+|.+|-.+|+..=..+.+ .|-||.
T Consensus 108 ~~~~~~L~~GD~~~fP~g~~H~~~n~~~~~~~l~vf~~~~f~~~~ 152 (367)
T TIGR03404 108 RNYIDDVGAGDLWYFPPGIPHSLQGLDEGCEFLLVFDDGNFSEDG 152 (367)
T ss_pred cEEEeEECCCCEEEECCCCeEEEEECCCCeEEEEEeCCcccCCcc
Confidence 3455567899999999999999999854333333 355555
No 109
>PF06844 DUF1244: Protein of unknown function (DUF1244); InterPro: IPR009654 This family consists of several short bacterial proteins of around 100 residues in length. The function of this family is unknown.; PDB: 2O35_A 3FYB_B.
Probab=27.37 E-value=26 Score=31.68 Aligned_cols=13 Identities=31% Similarity=1.275 Sum_probs=9.7
Q ss_pred cccHhHHhhhCCC
Q 002330 225 VYCIQCIKQWYPK 237 (935)
Q Consensus 225 ~FC~~CL~~rY~e 237 (935)
.||..||.+||.+
T Consensus 11 gFCRNCLskWy~~ 23 (68)
T PF06844_consen 11 GFCRNCLSKWYRE 23 (68)
T ss_dssp S--HHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 6999999999964
No 110
>KOG4286 consensus Dystrophin-like protein [Cell motility; Signal transduction mechanisms; Cytoskeleton]
Probab=27.29 E-value=30 Score=43.38 Aligned_cols=35 Identities=26% Similarity=0.538 Sum_probs=30.9
Q ss_pred cccCcc-ccccccccccCcCC-cccchhchHHhhcCc
Q 002330 332 YCNHCA-TSIIDLHRSCPKCS-YELCLTCCKEICEGR 366 (935)
Q Consensus 332 yCDnCk-TSI~D~HRSC~~Cs-yDLCL~CC~ELR~G~ 366 (935)
-|+.|+ -+|+-|--.|-+|. ||||++|+---|.|.
T Consensus 605 kCniCk~~pIvG~RyR~l~~fn~dlCq~CF~sgraak 641 (966)
T KOG4286|consen 605 KCNICKECPIIGFRYRSLKHFNYDICQSCFFSGRAAK 641 (966)
T ss_pred hcchhhhCccceeeeeehhhcChhHHhhHhhhccccc
Confidence 499997 59999999999995 899999999888764
No 111
>PRK12380 hydrogenase nickel incorporation protein HybF; Provisional
Probab=26.92 E-value=30 Score=33.65 Aligned_cols=24 Identities=25% Similarity=0.758 Sum_probs=18.8
Q ss_pred CcccccCccc--cccccccccCcCCc
Q 002330 329 ERVYCNHCAT--SIIDLHRSCPKCSY 352 (935)
Q Consensus 329 ERvyCDnCkT--SI~D~HRSC~~Csy 352 (935)
-+.+|..|.. ++-+++..||+|+-
T Consensus 69 ~~~~C~~Cg~~~~~~~~~~~CP~Cgs 94 (113)
T PRK12380 69 AQAWCWDCSQVVEIHQHDAQCPHCHG 94 (113)
T ss_pred cEEEcccCCCEEecCCcCccCcCCCC
Confidence 3679999975 55567788999983
No 112
>KOG1814 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=26.88 E-value=27 Score=41.10 Aligned_cols=119 Identities=19% Similarity=0.499 Sum_probs=69.8
Q ss_pred CCcccccccCCCCceEecC---cCCCCcccHhHHhhhCCCCChhhh--hccCCCCCCcccCccccccCCCcccccccCCh
Q 002330 201 RIKCHQCMKSERKYVVPCG---KCRTKVYCIQCIKQWYPKMSELDV--AEICPFCRRNCNCSVCLHTSGFIETSKINMTD 275 (935)
Q Consensus 201 ~~~CHQCrqk~~~~~v~C~---~C~r~~FC~~CL~~rY~e~~~edv--~w~CP~CRgiCNCs~Clr~~g~~~t~k~eis~ 275 (935)
..-|--|--...+. .|- -|. ..||-.|++..|--++.+.+ .-.||-|- |+ ...+++
T Consensus 184 lf~C~ICf~e~~G~--~c~~~lpC~-Hv~Ck~C~kdY~~~~i~eg~v~~l~Cp~~~----C~------~~a~~g------ 244 (445)
T KOG1814|consen 184 LFDCCICFEEQMGQ--HCFKFLPCS-HVFCKSCLKDYFTIQIQEGQVSCLKCPDPK----CG------SVAPPG------ 244 (445)
T ss_pred cccceeeehhhcCc--ceeeecccc-hHHHHHHHHHHHHHhhhcceeeeecCCCCC----Cc------ccCCch------
Confidence 34455555444431 222 277 89999999999976666432 24454431 11 112222
Q ss_pred hhhHHHHHHHHHhhhhhhHhhchHhhhhhHhhhhhcccCCCcccccccccCCCCcccccC--ccccc-c---ccccccCc
Q 002330 276 CEKVEHLRYLMVSLLPFIRQICEEQTQEIEFEASIQRVHSSKVGVSETLCGNDERVYCNH--CATSI-I---DLHRSCPK 349 (935)
Q Consensus 276 ~~kv~~l~YLl~~LLP~LK~i~~EQ~~E~EiEAkIqG~~~sei~I~~a~~~~DERvyCDn--CkTSI-~---D~HRSC~~ 349 (935)
.||++=.++..++.-+ +-++++.-..+.-+||-+ |.++. - +.---|.+
T Consensus 245 ----------------~vKelvg~EL~arYe~----------l~lqk~l~~msdv~yCPr~~Cq~p~~~d~~~~l~~Csk 298 (445)
T KOG1814|consen 245 ----------------QVKELVGDELFARYEK----------LMLQKTLELMSDVVYCPRACCQLPVKQDPGRALAICSK 298 (445)
T ss_pred ----------------HHHHHHHHHHHHHHHH----------HHHHHHHHhhcccccCChhhccCccccCchhhhhhhcc
Confidence 4666656656554322 334445556777899988 88873 2 33446999
Q ss_pred CCcccchhchHHhhcC
Q 002330 350 CSYELCLTCCKEICEG 365 (935)
Q Consensus 350 CsyDLCL~CC~ELR~G 365 (935)
|-|-+|-.|= .-+.|
T Consensus 299 CnFaFCtlCk-~t~HG 313 (445)
T KOG1814|consen 299 CNFAFCTLCK-LTWHG 313 (445)
T ss_pred CccHHHHHHH-HhhcC
Confidence 9999998873 33444
No 113
>KOG2177 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=26.51 E-value=35 Score=35.01 Aligned_cols=44 Identities=25% Similarity=0.643 Sum_probs=34.5
Q ss_pred cCCCcccccccCCCCceEecCcCCCCcccHhHHhhhCCCCChhhhhccCCCCC
Q 002330 199 LERIKCHQCMKSERKYVVPCGKCRTKVYCIQCIKQWYPKMSELDVAEICPFCR 251 (935)
Q Consensus 199 ~~~~~CHQCrqk~~~~~v~C~~C~r~~FC~~CL~~rY~e~~~edv~w~CP~CR 251 (935)
..-..|.-|...=... ..-.|+ ..||..||...-. ....||.||
T Consensus 11 ~~~~~C~iC~~~~~~p--~~l~C~-H~~c~~C~~~~~~------~~~~Cp~cr 54 (386)
T KOG2177|consen 11 QEELTCPICLEYFREP--VLLPCG-HNFCRACLTRSWE------GPLSCPVCR 54 (386)
T ss_pred cccccChhhHHHhhcC--cccccc-chHhHHHHHHhcC------CCcCCcccC
Confidence 4567888888775544 444588 9999999998876 458999999
No 114
>TIGR01080 rplX_A_E ribosomal protein L24p/L26e, archaeal/eukaryotic. This model represents the archaeal and eukaryotic branch of the ribosomal protein L24p/L26e family. Bacterial and organellar forms are represented by the related TIGR01079.
Probab=26.16 E-value=36 Score=33.56 Aligned_cols=44 Identities=25% Similarity=0.372 Sum_probs=39.2
Q ss_pred cCCcccCccccCHHHHHHHHHHhCccceEEEeecCceeEecCCCcc
Q 002330 815 IHPIHDQCFYLSSEHKKKLKEEFGVEPWTFEQKLGEAVFIPAGCPH 860 (935)
Q Consensus 815 ~dPIHDQ~fYLt~ehk~rLkEEyGVepWtf~Q~lGEAVFIPAGCPH 860 (935)
.-|+|...-++...+=+.|.++||++.+.| +-||-|-|=+|==.
T Consensus 13 ~a~~~~r~~~~~a~ls~elr~~y~~r~~~I--kkGD~V~Vi~Gk~K 56 (114)
T TIGR01080 13 TAPLHVRRKLMSAPLSKELREKYGKRALPV--RKGDKVRIMRGDFK 56 (114)
T ss_pred cCcHhhhhheeecccCHHHHHHcCccccee--ecCCEEEEecCCCC
Confidence 568999999999999999999999999966 78999999998643
No 115
>KOG0954 consensus PHD finger protein [General function prediction only]
Probab=25.99 E-value=12 Score=46.46 Aligned_cols=128 Identities=21% Similarity=0.445 Sum_probs=71.1
Q ss_pred CCCcccccccCC---CCceEecCcCCCCcccHhHHhhh-CCCCChhhhhccCCCC-CCcc-cCccccccCCCcccccccC
Q 002330 200 ERIKCHQCMKSE---RKYVVPCGKCRTKVYCIQCIKQW-YPKMSELDVAEICPFC-RRNC-NCSVCLHTSGFIETSKINM 273 (935)
Q Consensus 200 ~~~~CHQCrqk~---~~~~v~C~~C~r~~FC~~CL~~r-Y~e~~~edv~w~CP~C-RgiC-NCs~Clr~~g~~~t~k~ei 273 (935)
+...|-.||-.+ ...+|+|.+|+ - |.-+. ||=+..-+-.|.|-.| .|+| -|-.|-++.|.+++.+
T Consensus 270 edviCDvCrspD~e~~neMVfCd~Cn---~---cVHqaCyGIle~p~gpWlCr~Calg~~ppCvLCPkkGGamK~~~--- 340 (893)
T KOG0954|consen 270 EDVICDVCRSPDSEEANEMVFCDKCN---I---CVHQACYGILEVPEGPWLCRTCALGIEPPCVLCPKKGGAMKPTK--- 340 (893)
T ss_pred ccceeceecCCCccccceeEEeccch---h---HHHHhhhceeecCCCCeeehhccccCCCCeeeccccCCcccccC---
Confidence 557899999986 56789999988 2 22222 6532222356999999 5655 3667778888776442
Q ss_pred ChhhhHHHHHHHHHhhhhhhHhhchHhhhhhHhhhhhcccCCCcccccccccCCCCcccccCccccccccccccCcCCcc
Q 002330 274 TDCEKVEHLRYLMVSLLPFIRQICEEQTQEIEFEASIQRVHSSKVGVSETLCGNDERVYCNHCATSIIDLHRSCPKCSYE 353 (935)
Q Consensus 274 s~~~kv~~l~YLl~~LLP~LK~i~~EQ~~E~EiEAkIqG~~~sei~I~~a~~~~DERvyCDnCkTSI~D~HRSC~~CsyD 353 (935)
.+.+.+|..-..-.|- +.-|-..-+|==.+|-++. ..-.-+.|+.|++-.- .|-.|+.-
T Consensus 341 ---sgT~wAHvsCALwIPE---Vsie~~ekmePItkfs~Ip-----------esRwslvC~LCk~k~G----ACIqCs~k 399 (893)
T KOG0954|consen 341 ---SGTKWAHVSCALWIPE---VSIECPEKMEPITKFSHIP-----------ESRWSLVCNLCKVKSG----ACIQCSNK 399 (893)
T ss_pred ---CCCeeeEeeeeeccce---eeccCHhhcCcccccCCCc-----------HHHHHHHHHHhcccCc----ceEEeccc
Confidence 1123333332233343 3222111112223344433 2233468999998754 45555555
Q ss_pred cchh
Q 002330 354 LCLT 357 (935)
Q Consensus 354 LCL~ 357 (935)
-|.+
T Consensus 400 ~C~t 403 (893)
T KOG0954|consen 400 TCRT 403 (893)
T ss_pred chhh
Confidence 5554
No 116
>PF12852 Cupin_6: Cupin
Probab=25.91 E-value=39 Score=34.39 Aligned_cols=24 Identities=21% Similarity=0.457 Sum_probs=18.7
Q ss_pred EEeecCceeEecCCCccccccccc
Q 002330 844 FEQKLGEAVFIPAGCPHQVRNLKS 867 (935)
Q Consensus 844 f~Q~lGEAVFIPAGCPHQVRNLkS 867 (935)
+.=..||.||+|.|.||...--..
T Consensus 57 ~~L~~GDivllp~g~~H~l~~~~~ 80 (186)
T PF12852_consen 57 IRLEAGDIVLLPRGTAHVLSSDPD 80 (186)
T ss_pred EEecCCCEEEEcCCCCeEeCCCCC
Confidence 444679999999999999854433
No 117
>PRK11171 hypothetical protein; Provisional
Probab=25.90 E-value=39 Score=37.19 Aligned_cols=30 Identities=17% Similarity=0.286 Sum_probs=26.9
Q ss_pred hCccceEEEeecCceeEecCCCcccccccc
Q 002330 837 FGVEPWTFEQKLGEAVFIPAGCPHQVRNLK 866 (935)
Q Consensus 837 yGVepWtf~Q~lGEAVFIPAGCPHQVRNLk 866 (935)
+-+..-++.=..||++++|+++||+.+|.-
T Consensus 218 ~~~~~~~~~l~~GD~i~~~~~~~h~~~N~g 247 (266)
T PRK11171 218 YRLNNDWVEVEAGDFIWMRAYCPQACYAGG 247 (266)
T ss_pred EEECCEEEEeCCCCEEEECCCCCEEEECCC
Confidence 677888888899999999999999999964
No 118
>COG5540 RING-finger-containing ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=25.58 E-value=54 Score=37.44 Aligned_cols=49 Identities=20% Similarity=0.647 Sum_probs=35.8
Q ss_pred ccCCCcccccccCC-CCceEecCcCCCCcccHhHHhhhCCCCChhhhhccCCCCCC
Q 002330 198 ELERIKCHQCMKSE-RKYVVPCGKCRTKVYCIQCIKQWYPKMSELDVAEICPFCRR 252 (935)
Q Consensus 198 k~~~~~CHQCrqk~-~~~~v~C~~C~r~~FC~~CL~~rY~e~~~edv~w~CP~CRg 252 (935)
.+.|--|--|.-+- +...++-.=|+ ..|=.+|+.+|-. +..-+||+||.
T Consensus 320 a~~GveCaICms~fiK~d~~~vlPC~-H~FH~~Cv~kW~~-----~y~~~CPvCrt 369 (374)
T COG5540 320 ADKGVECAICMSNFIKNDRLRVLPCD-HRFHVGCVDKWLL-----GYSNKCPVCRT 369 (374)
T ss_pred cCCCceEEEEhhhhcccceEEEeccC-ceechhHHHHHHh-----hhcccCCccCC
Confidence 46678899998654 23334444588 8999999999965 44569999985
No 119
>PF14835 zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM7_B.
Probab=25.38 E-value=37 Score=30.62 Aligned_cols=42 Identities=29% Similarity=0.908 Sum_probs=20.4
Q ss_pred CCCcccccccCCCCceEec-CcCCCCcccHhHHhhhCCCCChhhhhccCCCCCC
Q 002330 200 ERIKCHQCMKSERKYVVPC-GKCRTKVYCIQCIKQWYPKMSELDVAEICPFCRR 252 (935)
Q Consensus 200 ~~~~CHQCrqk~~~~~v~C-~~C~r~~FC~~CL~~rY~e~~~edv~w~CP~CRg 252 (935)
+..+|.-|-.--. ...| .+|. ..||..|+....+ ..||+|.-
T Consensus 6 ~lLrCs~C~~~l~--~pv~l~~Ce-H~fCs~Ci~~~~~--------~~CPvC~~ 48 (65)
T PF14835_consen 6 ELLRCSICFDILK--EPVCLGGCE-HIFCSSCIRDCIG--------SECPVCHT 48 (65)
T ss_dssp HTTS-SSS-S--S--S-B---SSS---B-TTTGGGGTT--------TB-SSS--
T ss_pred HhcCCcHHHHHhc--CCceeccCc-cHHHHHHhHHhcC--------CCCCCcCC
Confidence 4567777764422 3345 4688 9999999987665 24999964
No 120
>PF02318 FYVE_2: FYVE-type zinc finger; InterPro: IPR003315 This entry represents the zinc-binding domain found in rabphilin Rab3A. The small G protein Rab3A plays an important role in the regulation of neurotransmitter release. The crystal structure of the small G protein Rab3A complexed with the effector domain of rabphilin-3A shows that the effector domain of rabphilin-3A contacts Rab3A in two distinct areas. The first interface involves the Rab3A switch I and switch II regions, which are sensitive to the nucleotide-binding state of Rab3A. The second interface consists of a deep pocket in Rab3A that interacts with a SGAWFF structural element of rabphilin-3A. Sequence and structure analysis, and biochemical data suggest that this pocket, or Rab complementarity-determining region (RabCDR), establishes a specific interaction between each Rab protein and its effectors. It has been suggested that RabCDRs could be major determinants of effector specificity during vesicle trafficking and fusion [].; GO: 0008270 zinc ion binding, 0017137 Rab GTPase binding, 0006886 intracellular protein transport; PDB: 2CSZ_A 2ZET_C 1ZBD_B 3BC1_B 2CJS_C 2A20_A.
Probab=24.84 E-value=12 Score=36.44 Aligned_cols=54 Identities=20% Similarity=0.386 Sum_probs=0.0
Q ss_pred hhhhhhhcc----CCCcccccccCC---CCceEecCcCCCCcccHhHHhhhCCCCChhhhhccCCCC
Q 002330 191 ARNRQEKEL----ERIKCHQCMKSE---RKYVVPCGKCRTKVYCIQCIKQWYPKMSELDVAEICPFC 250 (935)
Q Consensus 191 ~k~rk~~k~----~~~~CHQCrqk~---~~~~v~C~~C~r~~FC~~CL~~rY~e~~~edv~w~CP~C 250 (935)
..++..... +...|.-|.++. .+....|..|. ..+|..|-.. ...+..|.|-+|
T Consensus 40 ~~r~~~~~~~~~~~~~~C~~C~~~fg~l~~~~~~C~~C~-~~VC~~C~~~-----~~~~~~WlC~vC 100 (118)
T PF02318_consen 40 KMRREALGNSQKYGERHCARCGKPFGFLFNRGRVCVDCK-HRVCKKCGVY-----SKKEPIWLCKVC 100 (118)
T ss_dssp HHHHHHCSCSTTHCCSB-TTTS-BCSCTSTTCEEETTTT-EEEETTSEEE-----TSSSCCEEEHHH
T ss_pred HHHhhccccccccCCcchhhhCCcccccCCCCCcCCcCC-ccccCccCCc-----CCCCCCEEChhh
No 121
>KOG2164 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=24.62 E-value=36 Score=41.00 Aligned_cols=51 Identities=27% Similarity=0.817 Sum_probs=35.8
Q ss_pred CCcccccccCCCCceEec-CcCCCCcccHhHHhhhCCCCChhhhhccCCCCCCcccCccccccCCC
Q 002330 201 RIKCHQCMKSERKYVVPC-GKCRTKVYCIQCIKQWYPKMSELDVAEICPFCRRNCNCSVCLHTSGF 265 (935)
Q Consensus 201 ~~~CHQCrqk~~~~~v~C-~~C~r~~FC~~CL~~rY~e~~~edv~w~CP~CRgiCNCs~Clr~~g~ 265 (935)
...|-=|--... +.+ ++|+ ..||.+||-+... .+ +|++-|.|..|+.+-.+
T Consensus 186 ~~~CPICL~~~~---~p~~t~CG-HiFC~~CiLqy~~-~s---------~~~~~~~CPiC~s~I~~ 237 (513)
T KOG2164|consen 186 DMQCPICLEPPS---VPVRTNCG-HIFCGPCILQYWN-YS---------AIKGPCSCPICRSTITL 237 (513)
T ss_pred CCcCCcccCCCC---cccccccC-ceeeHHHHHHHHh-hh---------cccCCccCCchhhhccc
Confidence 566777765543 222 3499 9999999998653 21 67888999999877543
No 122
>PF14446 Prok-RING_1: Prokaryotic RING finger family 1
Probab=24.56 E-value=31 Score=30.04 Aligned_cols=24 Identities=33% Similarity=0.787 Sum_probs=19.9
Q ss_pred CCCCcccccCccccccccccccC----cCCc
Q 002330 326 GNDERVYCNHCATSIIDLHRSCP----KCSY 352 (935)
Q Consensus 326 ~~DERvyCDnCkTSI~D~HRSC~----~Csy 352 (935)
+.|..|.|.-|.|+ |||.|- .|.+
T Consensus 17 ~~dDiVvCp~Cgap---yHR~C~~~~g~C~~ 44 (54)
T PF14446_consen 17 DGDDIVVCPECGAP---YHRDCWEKAGGCIN 44 (54)
T ss_pred CCCCEEECCCCCCc---ccHHHHhhCCceEe
Confidence 57888999999998 899997 5554
No 123
>COG5222 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=24.11 E-value=50 Score=37.55 Aligned_cols=42 Identities=33% Similarity=0.761 Sum_probs=27.4
Q ss_pred CcccccccCCCCc-eEecCcCCCCcccHhHHhhhCCCCChhhhhccCCCCC
Q 002330 202 IKCHQCMKSERKY-VVPCGKCRTKVYCIQCIKQWYPKMSELDVAEICPFCR 251 (935)
Q Consensus 202 ~~CHQCrqk~~~~-~v~C~~C~r~~FC~~CL~~rY~e~~~edv~w~CP~CR 251 (935)
..|.-|..--+.. ++.| |+ .-||..||.+..- |..+.||.|-
T Consensus 275 LkCplc~~Llrnp~kT~c--C~-~~fc~eci~~al~-----dsDf~CpnC~ 317 (427)
T COG5222 275 LKCPLCHCLLRNPMKTPC--CG-HTFCDECIGTALL-----DSDFKCPNCS 317 (427)
T ss_pred ccCcchhhhhhCcccCcc--cc-chHHHHHHhhhhh-----hccccCCCcc
Confidence 5677665443221 2233 78 9999999998765 4456899874
No 124
>PF08990 Docking: Erythronolide synthase docking; InterPro: IPR015083 The N-terminal docking domain found in modular polyketide synthase assumes an alpha-helical structure, wherein two alpha-helices are connected by a short loop. Two such N-terminal domains dimerise to form amphipathic parallel alpha-helical coiled coils: dimerisation is essential for protein function []. ; GO: 0016740 transferase activity, 0048037 cofactor binding; PDB: 2HG4_E.
Probab=23.98 E-value=58 Score=24.72 Aligned_cols=17 Identities=35% Similarity=0.585 Sum_probs=13.9
Q ss_pred ChhHHHHHHHHHHHhhc
Q 002330 788 DVPKLEAYLRKHFKEFR 804 (935)
Q Consensus 788 DvpKLreyL~kh~~Ef~ 804 (935)
+-+||++||++...|.+
T Consensus 3 ~e~kLr~YLkr~t~eL~ 19 (27)
T PF08990_consen 3 NEDKLRDYLKRVTAELR 19 (27)
T ss_dssp -HCHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHH
Confidence 45799999999998864
No 125
>PF02311 AraC_binding: AraC-like ligand binding domain; InterPro: IPR003313 This entry defines the arabinose-binding and dimerisation domain of the bacterial gene regulatory protein AraC. The crystal structure of the arabinose-binding and dimerization domain of the Escherichia coli gene regulatory protein AraC was determined in the presence and absence of L-arabinose. The arabinose-bound molecule shows that the protein adopts an unusual fold, binding sugar within a beta barrel and completely burying the arabinose with the amino-terminal arm of the protein. Dimer contacts in the presence of arabinose are mediated by an antiparallel coiled-coil. In the uncomplexed protein, the amino-terminal arm is disordered, uncovering the sugar-binding pocket and allowing it to serve as an oligomerization interface [].; GO: 0006355 regulation of transcription, DNA-dependent; PDB: 1XJA_B 2ARA_A 2AAC_B 2ARC_A.
Probab=23.10 E-value=55 Score=29.91 Aligned_cols=46 Identities=24% Similarity=0.404 Sum_probs=28.2
Q ss_pred hCccceEEEeecCceeEecCCCcccccccc--ccceecccccCccchHH
Q 002330 837 FGVEPWTFEQKLGEAVFIPAGCPHQVRNLK--SCTKVAVDFVSPENVDE 883 (935)
Q Consensus 837 yGVepWtf~Q~lGEAVFIPAGCPHQVRNLk--SCIKVAlDFVSPEnV~e 883 (935)
+.|..=++.=.+||++|||.|.+|...--. .+....+.| +|+-+.+
T Consensus 36 ~~~~~~~~~l~~g~~~li~p~~~H~~~~~~~~~~~~~~i~~-~~~~~~~ 83 (136)
T PF02311_consen 36 LHIDGQEYPLKPGDLFLIPPGQPHSYYPDSNEPWEYYWIYF-SPDFLEE 83 (136)
T ss_dssp EEETTEEEEE-TT-EEEE-TTS-EEEEE-TTSEEEEEEEEE----GGGG
T ss_pred EEECCEEEEEECCEEEEecCCccEEEecCCCCCEEEEEEEE-CHHHHHH
Confidence 445556677789999999999999988777 677666666 5555544
No 126
>PF09567 RE_MamI: MamI restriction endonuclease; InterPro: IPR019067 There are four classes of restriction endonucleases: types I, II,III and IV. All types of enzymes recognise specific short DNA sequences and carry out the endonucleolytic cleavage of DNA to give specific double-stranded fragments with terminal 5'-phosphates. They differ in their recognition sequence, subunit composition, cleavage position, and cofactor requirements [, ], as summarised below: Type I enzymes (3.1.21.3 from EC) cleave at sites remote from recognition site; require both ATP and S-adenosyl-L-methionine to function; multifunctional protein with both restriction and methylase (2.1.1.72 from EC) activities. Type II enzymes (3.1.21.4 from EC) cleave within or at short specific distances from recognition site; most require magnesium; single function (restriction) enzymes independent of methylase. Type III enzymes (3.1.21.5 from EC) cleave at sites a short distance from recognition site; require ATP (but doesn't hydrolyse it); S-adenosyl-L-methionine stimulates reaction but is not required; exists as part of a complex with a modification methylase methylase (2.1.1.72 from EC). Type IV enzymes target methylated DNA. Type II restriction endonucleases (3.1.21.4 from EC) are components of prokaryotic DNA restriction-modification mechanisms that protect the organism against invading foreign DNA. These site-specific deoxyribonucleases catalyse the endonucleolytic cleavage of DNA to give specific double-stranded fragments with terminal 5'-phosphates. Of the 3000 restriction endonucleases that have been characterised, most are homodimeric or tetrameric enzymes that cleave target DNA at sequence-specific sites close to the recognition site. For homodimeric enzymes, the recognition site is usually a palindromic sequence 4-8 bp in length. Most enzymes require magnesium ions as a cofactor for catalysis. Although they can vary in their mode of recognition, many restriction endonucleases share a similar structural core comprising four beta-strands and one alpha-helix, as well as a similar mechanism of cleavage, suggesting a common ancestral origin []. However, there is still considerable diversity amongst restriction endonucleases [, ]. The target site recognition process triggers large conformational changes of the enzyme and the target DNA, leading to the activation of the catalytic centres. Like other DNA binding proteins, restriction enzymes are capable of non-specific DNA binding as well, which is the prerequisite for efficient target site location by facilitated diffusion. Non-specific binding usually does not involve interactions with the bases but only with the DNA backbone []. This entry includes the MamI restriction endonuclease which recognises and cleaves GATNN^NNATC. ; GO: 0003677 DNA binding, 0009036 Type II site-specific deoxyribonuclease activity, 0009307 DNA restriction-modification system
Probab=22.52 E-value=37 Score=37.76 Aligned_cols=21 Identities=38% Similarity=1.043 Sum_probs=19.8
Q ss_pred cccCccccccccccccCcCCc
Q 002330 332 YCNHCATSIIDLHRSCPKCSY 352 (935)
Q Consensus 332 yCDnCkTSI~D~HRSC~~Csy 352 (935)
-|++|.+-+.-|.-+||+|+.
T Consensus 84 ~C~~CGa~V~~~e~~Cp~C~S 104 (314)
T PF09567_consen 84 KCNNCGANVSRLEESCPNCGS 104 (314)
T ss_pred hhccccceeeehhhcCCCCCc
Confidence 699999999999999999975
No 127
>smart00647 IBR In Between Ring fingers. the domains occurs between pairs og RING fingers
Probab=22.50 E-value=55 Score=27.32 Aligned_cols=32 Identities=31% Similarity=0.956 Sum_probs=24.3
Q ss_pred Cccccc--Ccccccc------ccccccCcCCcccchhchH
Q 002330 329 ERVYCN--HCATSII------DLHRSCPKCSYELCLTCCK 360 (935)
Q Consensus 329 ERvyCD--nCkTSI~------D~HRSC~~CsyDLCL~CC~ 360 (935)
...+|- .|...|. +.+-.|++|.+.+|..|=.
T Consensus 17 ~~~~CP~~~C~~~~~~~~~~~~~~v~C~~C~~~fC~~C~~ 56 (64)
T smart00647 17 DLKWCPAPDCSAAIIVTEEEGCNRVTCPKCGFSFCFRCKV 56 (64)
T ss_pred CccCCCCCCCcceEEecCCCCCCeeECCCCCCeECCCCCC
Confidence 455787 7866654 3488899999999999943
No 128
>KOG1729 consensus FYVE finger containing protein [General function prediction only]
Probab=22.36 E-value=16 Score=41.05 Aligned_cols=37 Identities=22% Similarity=0.574 Sum_probs=30.8
Q ss_pred cCCCcccccccCC---CCceEecCcCCCCcccHhHHhhhCC
Q 002330 199 LERIKCHQCMKSE---RKYVVPCGKCRTKVYCIQCIKQWYP 236 (935)
Q Consensus 199 ~~~~~CHQCrqk~---~~~~v~C~~C~r~~FC~~CL~~rY~ 236 (935)
.....|++|.... ..+.-.|.+|+ ..||..|-.++|.
T Consensus 166 ~ea~~C~~C~~~~Ftl~~RRHHCR~CG-~ivC~~Cs~n~~~ 205 (288)
T KOG1729|consen 166 SEATECMVCGCTEFTLSERRHHCRNCG-DIVCAPCSRNRFL 205 (288)
T ss_pred ccceecccCCCccccHHHHHHHHHhcc-hHhhhhhhcCccc
Confidence 4788999999843 35567899999 9999999999985
No 129
>smart00647 IBR In Between Ring fingers. the domains occurs between pairs og RING fingers
Probab=21.90 E-value=39 Score=28.22 Aligned_cols=38 Identities=26% Similarity=0.669 Sum_probs=26.9
Q ss_pred CCCccc--ccccC------CCCceEecCcCCCCcccHhHHhhhCCCC
Q 002330 200 ERIKCH--QCMKS------ERKYVVPCGKCRTKVYCIQCIKQWYPKM 238 (935)
Q Consensus 200 ~~~~CH--QCrqk------~~~~~v~C~~C~r~~FC~~CL~~rY~e~ 238 (935)
..+.|. .|..- .....+.|..|+ ..||..|...|-+.+
T Consensus 17 ~~~~CP~~~C~~~~~~~~~~~~~~v~C~~C~-~~fC~~C~~~~H~~~ 62 (64)
T smart00647 17 DLKWCPAPDCSAAIIVTEEEGCNRVTCPKCG-FSFCFRCKVPWHSPV 62 (64)
T ss_pred CccCCCCCCCcceEEecCCCCCCeeECCCCC-CeECCCCCCcCCCCC
Confidence 345566 66432 134589999999 999999998886544
No 130
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=21.86 E-value=31 Score=43.40 Aligned_cols=47 Identities=17% Similarity=0.364 Sum_probs=29.5
Q ss_pred ccccccCCCCceEecC--cCCCCcccHhHHhhhCCCCChhhhhccCCCCC
Q 002330 204 CHQCMKSERKYVVPCG--KCRTKVYCIQCIKQWYPKMSELDVAEICPFCR 251 (935)
Q Consensus 204 CHQCrqk~~~~~v~C~--~C~r~~FC~~CL~~rY~e~~~edv~w~CP~CR 251 (935)
|--|--.+.+..-.|- +|. ..||.-||..|-..+..+.+.-.|++|-
T Consensus 102 C~~E~S~~~ds~~i~P~~~~~-~~~CP~Ci~s~~DqL~~~~k~c~H~FC~ 150 (1134)
T KOG0825|consen 102 CEKEHSPDVDSSNICPVQTHV-ENQCPNCLKSCNDQLEESEKHTAHYFCE 150 (1134)
T ss_pred hheecCCcccccCcCchhhhh-hhhhhHHHHHHHHHhhccccccccccHH
Confidence 3333333344455564 376 7888888888887776666666677764
No 131
>TIGR02297 HpaA 4-hydroxyphenylacetate catabolism regulatory protein HpaA. This putative transcriptional regulator, which contains both the substrate-binding, dimerization domain (pfam02311) and the helix-turn-helix DNA-binding domain (pfam00165) of the AraC famil, is located proximal to genes of the 4-hydroxyphenylacetate catabolism pathway.
Probab=21.78 E-value=69 Score=34.37 Aligned_cols=31 Identities=10% Similarity=0.177 Sum_probs=24.9
Q ss_pred hCccceEEEeecCceeEecCCCccccccccc
Q 002330 837 FGVEPWTFEQKLGEAVFIPAGCPHQVRNLKS 867 (935)
Q Consensus 837 yGVepWtf~Q~lGEAVFIPAGCPHQVRNLkS 867 (935)
+.|..=++.=..||+||||+|.+|++..-.+
T Consensus 57 ~~~~~~~~~l~~g~~~ii~~~~~H~~~~~~~ 87 (287)
T TIGR02297 57 LQLDEHEYSEYAPCFFLTPPSVPHGFVTDLD 87 (287)
T ss_pred EEECCEEEEecCCeEEEeCCCCccccccCCC
Confidence 5566667777799999999999999875444
No 132
>KOG2879 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=21.53 E-value=89 Score=35.30 Aligned_cols=50 Identities=30% Similarity=0.638 Sum_probs=35.0
Q ss_pred cCCCcccccccCCCCceEecCcCCCCcccHhHHhhhCCCCChhhhhccCCCCCCcc
Q 002330 199 LERIKCHQCMKSERKYVVPCGKCRTKVYCIQCIKQWYPKMSELDVAEICPFCRRNC 254 (935)
Q Consensus 199 ~~~~~CHQCrqk~~~~~v~C~~C~r~~FC~~CL~~rY~e~~~edv~w~CP~CRgiC 254 (935)
+..+.|--|..--.-..+. ..|+ ..||+-||....- -++...||.|-..|
T Consensus 237 t~~~~C~~Cg~~PtiP~~~-~~C~-HiyCY~Ci~ts~~----~~asf~Cp~Cg~~~ 286 (298)
T KOG2879|consen 237 TSDTECPVCGEPPTIPHVI-GKCG-HIYCYYCIATSRL----WDASFTCPLCGENV 286 (298)
T ss_pred cCCceeeccCCCCCCCeee-cccc-ceeehhhhhhhhc----chhhcccCccCCCC
Confidence 3456788998655432222 2388 8999999998763 27778999997654
No 133
>KOG1785 consensus Tyrosine kinase negative regulator CBL [Defense mechanisms]
Probab=21.17 E-value=43 Score=39.40 Aligned_cols=44 Identities=27% Similarity=0.882 Sum_probs=32.7
Q ss_pred CCcccccccCCCCceEecCcCCCCcccHhHHhhhCCCCChhhhhccCCCCC
Q 002330 201 RIKCHQCMKSERKYVVPCGKCRTKVYCIQCIKQWYPKMSELDVAEICPFCR 251 (935)
Q Consensus 201 ~~~CHQCrqk~~~~~v~C~~C~r~~FC~~CL~~rY~e~~~edv~w~CP~CR 251 (935)
-..|--|--++.+.++. -|+ ...|..||..|-.. +-.-.||+||
T Consensus 369 FeLCKICaendKdvkIE--PCG-HLlCt~CLa~WQ~s----d~gq~CPFCR 412 (563)
T KOG1785|consen 369 FELCKICAENDKDVKIE--PCG-HLLCTSCLAAWQDS----DEGQTCPFCR 412 (563)
T ss_pred HHHHHHhhccCCCcccc--ccc-chHHHHHHHhhccc----CCCCCCCcee
Confidence 45688888887654432 488 89999999999753 2256899998
No 134
>PRK13503 transcriptional activator RhaS; Provisional
Probab=20.54 E-value=50 Score=35.19 Aligned_cols=31 Identities=10% Similarity=0.083 Sum_probs=23.1
Q ss_pred hCccceEEEeecCceeEecCCCccccccccc
Q 002330 837 FGVEPWTFEQKLGEAVFIPAGCPHQVRNLKS 867 (935)
Q Consensus 837 yGVepWtf~Q~lGEAVFIPAGCPHQVRNLkS 867 (935)
+.|..=++.=..||++|||+|.+|...+...
T Consensus 48 ~~i~~~~~~l~~g~~~~i~~~~~h~~~~~~~ 78 (278)
T PRK13503 48 HVFNGQPYTLSGGTVCFVRDHDRHLYEHTDN 78 (278)
T ss_pred eEecCCcccccCCcEEEECCCccchhhhccC
Confidence 3344444555789999999999999877665
No 135
>PRK15457 ethanolamine utilization protein EutQ; Provisional
Probab=20.50 E-value=56 Score=35.96 Aligned_cols=75 Identities=19% Similarity=0.099 Sum_probs=53.0
Q ss_pred CceEEEeecCCChhHHHHHHHHHHHhhccccCCCCCcccCCcccCccccCHHHHHHHHHHhCccceEEEeecCceeEecC
Q 002330 777 GGALWDIFRRQDVPKLEAYLRKHFKEFRHVYCSPVEQVIHPIHDQCFYLSSEHKKKLKEEFGVEPWTFEQKLGEAVFIPA 856 (935)
Q Consensus 777 ~GAlWDIFRreDvpKLreyL~kh~~Ef~h~~~~pv~~v~dPIHDQ~fYLt~ehk~rLkEEyGVepWtf~Q~lGEAVFIPA 856 (935)
.=.+-|+|-.+|-+.|-- -|-.+... ....+-=|||.+|+-...-. +-|.+=++.=.+||.+|||.
T Consensus 142 ~v~~~d~~~~~d~s~m~a-------Gf~~~~~~--sf~wtl~~dEi~YVLEGe~~-----l~IdG~t~~l~pGDvlfIPk 207 (233)
T PRK15457 142 CVGLTDLVTGDDGSSMAA-------GFMQWENA--FFPWTLNYDEIDMVLEGELH-----VRHEGETMIAKAGDVMFIPK 207 (233)
T ss_pred cEEeeeeeccCCCCceee-------EEEEEecC--ccceeccceEEEEEEEeEEE-----EEECCEEEEeCCCcEEEECC
Confidence 456678888888887722 11111112 23477888999988665443 77889999999999999999
Q ss_pred CCccccccc
Q 002330 857 GCPHQVRNL 865 (935)
Q Consensus 857 GCPHQVRNL 865 (935)
|.+|.-.+-
T Consensus 208 Gs~~hf~tp 216 (233)
T PRK15457 208 GSSIEFGTP 216 (233)
T ss_pred CCeEEecCC
Confidence 999876543
No 136
>KOG0311 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=20.47 E-value=48 Score=38.46 Aligned_cols=59 Identities=20% Similarity=0.484 Sum_probs=38.4
Q ss_pred cCCCcccccccCCCCceEecCcCCCCcccHhHHhhhCCCCChhhhhccCCCCCCcccCccccccCC
Q 002330 199 LERIKCHQCMKSERKYVVPCGKCRTKVYCIQCIKQWYPKMSELDVAEICPFCRRNCNCSVCLHTSG 264 (935)
Q Consensus 199 ~~~~~CHQCrqk~~~~~v~C~~C~r~~FC~~CL~~rY~e~~~edv~w~CP~CRgiCNCs~Clr~~g 264 (935)
....+|--|.--=.. .+.=..|. .+||..||.+.+- .-...||-||..|--+.=||.+.
T Consensus 41 ~~~v~c~icl~llk~-tmttkeCl-hrfc~~ci~~a~r-----~gn~ecptcRk~l~SkrsLr~Dp 99 (381)
T KOG0311|consen 41 DIQVICPICLSLLKK-TMTTKECL-HRFCFDCIWKALR-----SGNNECPTCRKKLVSKRSLRIDP 99 (381)
T ss_pred hhhhccHHHHHHHHh-hcccHHHH-HHHHHHHHHHHHH-----hcCCCCchHHhhccccccCCCCc
Confidence 345677777632211 11223588 9999999987663 22458999999887776666653
No 137
>PF06249 EutQ: Ethanolamine utilisation protein EutQ; InterPro: IPR010424 The eut operon of Salmonella typhimurium encodes proteins involved in the cobalamin-dependent degradation of ethanolamine. The role of EutQ in this process is unclear [].; PDB: 2PYT_B 3LWC_A.
Probab=20.31 E-value=74 Score=32.91 Aligned_cols=21 Identities=33% Similarity=0.670 Sum_probs=15.9
Q ss_pred ccceEEEeecCceeEecCCCc
Q 002330 839 VEPWTFEQKLGEAVFIPAGCP 859 (935)
Q Consensus 839 VepWtf~Q~lGEAVFIPAGCP 859 (935)
+++=++.=+.||+||||.|.-
T Consensus 110 ~~G~~~~A~~GDvi~iPkGs~ 130 (152)
T PF06249_consen 110 IDGQTVTAKPGDVIFIPKGST 130 (152)
T ss_dssp ETTEEEEEETT-EEEE-TT-E
T ss_pred ECCEEEEEcCCcEEEECCCCE
Confidence 568899999999999999963
Done!