Query 002330
Match_columns 935
No_of_seqs 221 out of 308
Neff 4.2
Searched_HMMs 29240
Date Mon Mar 25 21:58:20 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002330.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/002330hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ypd_A Probable JMJC domain-co 100.0 4E-129 2E-133 1060.9 15.8 353 496-920 15-370 (392)
2 4gjz_A Lysine-specific demethy 99.2 1.7E-11 5.7E-16 123.0 5.1 36 838-873 197-232 (235)
3 3k2o_A Bifunctional arginine d 99.1 4.3E-10 1.5E-14 123.1 12.7 53 838-890 252-304 (336)
4 3al5_A HTYW5, JMJC domain-cont 98.8 2.3E-09 7.9E-14 116.7 6.7 42 839-880 237-278 (338)
5 2yu1_A JMJC domain-containing 98.8 2.4E-08 8.3E-13 113.1 14.5 53 837-889 261-313 (451)
6 3k3o_A PHF8, PHD finger protei 98.8 3E-08 1E-12 109.9 14.8 79 838-922 213-295 (371)
7 3kv4_A PHD finger protein 8; e 98.8 1.5E-08 5E-13 114.8 10.6 78 839-922 298-379 (447)
8 3kv5_D JMJC domain-containing 98.7 2.8E-08 9.5E-13 113.7 11.7 51 839-889 333-383 (488)
9 3kv9_A JMJC domain-containing 98.7 7.1E-08 2.4E-12 107.7 13.6 52 838-889 241-292 (397)
10 3d8c_A Hypoxia-inducible facto 98.7 4.8E-09 1.6E-13 114.8 3.6 40 838-877 257-297 (349)
11 3pua_A GRC5, PHD finger protei 98.6 1.9E-07 6.3E-12 104.3 12.8 79 838-922 240-322 (392)
12 3pur_A Lysine-specific demethy 97.4 0.00011 3.8E-09 84.6 4.9 51 839-889 363-413 (528)
13 2xxz_A Lysine-specific demethy 97.1 0.00045 1.5E-08 75.9 6.4 87 776-881 232-318 (332)
14 3avr_A Lysine-specific demethy 97.0 0.00061 2.1E-08 78.8 6.5 89 776-883 291-379 (531)
15 4ask_A Lysine-specific demethy 96.4 0.0029 9.9E-08 72.6 6.2 88 776-882 266-353 (510)
16 3dxt_A JMJC domain-containing 95.9 0.0087 3E-07 66.3 6.5 94 779-883 210-303 (354)
17 3opt_A DNA damage-responsive t 94.9 0.032 1.1E-06 62.2 6.8 93 779-882 253-345 (373)
18 2ox0_A JMJC domain-containing 94.6 0.05 1.7E-06 60.8 7.3 95 778-883 227-321 (381)
19 2ysl_A Tripartite motif-contai 92.5 0.2 6.8E-06 41.8 5.9 48 200-253 19-66 (73)
20 2ecw_A Tripartite motif-contai 91.1 0.13 4.6E-06 43.6 3.2 52 200-254 18-69 (85)
21 2opk_A Hypothetical protein; p 90.9 0.069 2.4E-06 48.8 1.4 24 844-867 75-98 (112)
22 1yhf_A Hypothetical protein SP 90.6 0.12 4E-06 46.1 2.6 58 815-879 57-114 (115)
23 2pfw_A Cupin 2, conserved barr 90.3 0.095 3.2E-06 46.8 1.7 58 814-879 50-107 (116)
24 3ht1_A REMF protein; cupin fol 90.1 0.16 5.5E-06 46.8 3.1 41 839-879 76-116 (145)
25 4ayc_A E3 ubiquitin-protein li 89.8 0.41 1.4E-05 45.3 5.8 44 201-253 53-96 (138)
26 3fjs_A Uncharacterized protein 89.8 0.13 4.5E-06 46.9 2.2 42 837-879 69-110 (114)
27 3lag_A Uncharacterized protein 89.7 0.11 3.7E-06 46.8 1.6 24 844-867 61-84 (98)
28 2b8m_A Hypothetical protein MJ 89.7 0.18 6.1E-06 45.4 2.9 36 845-880 69-106 (117)
29 2q30_A Uncharacterized protein 89.5 0.11 3.6E-06 45.7 1.3 36 841-878 73-108 (110)
30 3h8u_A Uncharacterized conserv 89.5 0.16 5.6E-06 46.0 2.6 38 842-879 79-116 (125)
31 2d8t_A Dactylidin, ring finger 89.4 0.36 1.2E-05 40.4 4.5 45 200-253 14-58 (71)
32 1vrb_A Putative asparaginyl hy 89.4 0.17 5.9E-06 55.3 3.1 36 839-874 215-252 (342)
33 2fc7_A ZZZ3 protein; structure 89.4 0.19 6.6E-06 44.9 2.9 37 328-364 19-60 (82)
34 3lrq_A E3 ubiquitin-protein li 89.1 0.17 5.8E-06 45.5 2.3 49 199-254 20-68 (100)
35 1v70_A Probable antibiotics sy 89.1 0.17 5.8E-06 43.4 2.2 37 842-878 67-103 (105)
36 2csy_A Zinc finger protein 183 88.9 0.25 8.6E-06 42.3 3.2 47 200-255 14-60 (81)
37 4e2g_A Cupin 2 conserved barre 88.8 0.33 1.1E-05 43.9 4.1 59 814-879 57-115 (126)
38 1iym_A EL5; ring-H2 finger, ub 88.2 0.46 1.6E-05 37.4 4.1 46 200-252 4-51 (55)
39 1tot_A CREB-binding protein; z 88.0 0.15 5.1E-06 41.9 1.1 33 330-363 6-39 (52)
40 2ozj_A Cupin 2, conserved barr 87.9 0.18 6.2E-06 45.1 1.8 36 837-872 71-106 (114)
41 1juh_A Quercetin 2,3-dioxygena 87.8 0.21 7.1E-06 54.6 2.4 40 843-883 292-332 (350)
42 2xlg_A SLL1785 protein, CUCA; 87.8 0.32 1.1E-05 50.9 3.8 76 814-892 59-163 (239)
43 2fqp_A Hypothetical protein BP 87.8 0.24 8.3E-06 43.5 2.4 25 843-867 60-84 (97)
44 2ecv_A Tripartite motif-contai 87.6 0.16 5.5E-06 43.0 1.2 53 200-255 18-70 (85)
45 3d82_A Cupin 2, conserved barr 87.5 0.26 9E-06 42.5 2.5 28 843-870 69-96 (102)
46 2dip_A Zinc finger SWIM domain 87.5 0.19 6.6E-06 46.3 1.6 37 327-363 28-66 (98)
47 3knv_A TNF receptor-associated 87.4 0.13 4.5E-06 49.5 0.5 47 199-253 29-75 (141)
48 2ecm_A Ring finger and CHY zin 87.3 0.26 9E-06 38.8 2.1 46 200-252 4-51 (55)
49 2e5r_A Dystrobrevin alpha; ZZ 87.2 0.23 7.9E-06 42.3 1.9 34 331-364 12-47 (63)
50 3ibm_A Cupin 2, conserved barr 86.9 0.22 7.6E-06 48.7 1.8 60 814-879 72-132 (167)
51 2gu9_A Tetracenomycin polyketi 86.9 0.34 1.2E-05 42.4 2.9 40 840-879 60-99 (113)
52 1x4j_A Ring finger protein 38; 86.7 0.35 1.2E-05 40.8 2.7 47 199-252 21-68 (75)
53 1o5u_A Novel thermotoga mariti 86.7 0.22 7.4E-06 45.3 1.5 31 841-871 67-97 (101)
54 3kgz_A Cupin 2 conserved barre 86.5 0.38 1.3E-05 46.9 3.3 41 839-879 79-119 (156)
55 2ecy_A TNF receptor-associated 86.5 0.3 1E-05 40.3 2.2 45 201-253 15-59 (66)
56 2kiz_A E3 ubiquitin-protein li 86.4 0.47 1.6E-05 39.2 3.3 47 199-252 12-59 (69)
57 2y43_A E3 ubiquitin-protein li 86.3 0.84 2.9E-05 40.5 5.1 46 200-253 21-66 (99)
58 2ecj_A Tripartite motif-contai 85.8 0.69 2.3E-05 36.6 3.9 45 200-250 14-58 (58)
59 2ysj_A Tripartite motif-contai 85.5 0.75 2.6E-05 37.4 4.0 45 200-250 19-63 (63)
60 3h7j_A Bacilysin biosynthesis 85.4 0.29 9.9E-06 50.3 1.9 60 814-879 162-221 (243)
61 2egp_A Tripartite motif-contai 84.6 0.42 1.4E-05 40.3 2.2 52 200-254 11-63 (79)
62 2ozi_A Hypothetical protein RP 84.3 0.3 1E-05 44.2 1.2 23 845-867 62-84 (98)
63 2ckl_A Polycomb group ring fin 84.0 1.6 5.4E-05 39.4 5.9 47 199-253 13-59 (108)
64 2i45_A Hypothetical protein; n 83.9 0.49 1.7E-05 41.9 2.4 38 842-882 67-104 (107)
65 1y9q_A Transcriptional regulat 83.7 0.36 1.2E-05 47.3 1.6 43 837-880 139-181 (192)
66 2djb_A Polycomb group ring fin 83.6 0.5 1.7E-05 39.6 2.3 45 201-253 15-59 (72)
67 2l0b_A E3 ubiquitin-protein li 83.6 0.59 2E-05 41.3 2.8 48 199-253 38-86 (91)
68 2ect_A Ring finger protein 126 83.6 0.9 3.1E-05 38.4 3.8 47 200-253 14-61 (78)
69 1chc_A Equine herpes virus-1 r 83.4 0.77 2.6E-05 37.7 3.3 46 200-253 4-49 (68)
70 1lr5_A Auxin binding protein 1 83.3 0.42 1.5E-05 45.7 1.9 25 842-866 88-112 (163)
71 2lv9_A Histone-lysine N-methyl 83.1 0.65 2.2E-05 42.4 2.9 47 200-251 27-74 (98)
72 1weu_A Inhibitor of growth fam 82.8 2 6.7E-05 39.2 5.9 48 199-252 34-84 (91)
73 2oa2_A BH2720 protein; 1017534 82.6 0.66 2.2E-05 43.9 2.9 25 843-867 89-113 (148)
74 2yur_A Retinoblastoma-binding 82.5 0.58 2E-05 39.6 2.2 46 201-252 15-60 (74)
75 3l2h_A Putative sugar phosphat 82.4 0.68 2.3E-05 44.2 2.9 41 839-879 83-124 (162)
76 3ql9_A Transcriptional regulat 82.3 0.64 2.2E-05 44.9 2.7 53 197-252 53-110 (129)
77 3cew_A Uncharacterized cupin p 82.1 0.54 1.9E-05 42.7 2.0 30 838-867 62-91 (125)
78 3jzv_A Uncharacterized protein 81.8 0.57 1.9E-05 46.1 2.2 30 838-867 87-116 (166)
79 3l11_A E3 ubiquitin-protein li 81.6 0.89 3.1E-05 41.4 3.3 45 201-253 15-59 (115)
80 2ep4_A Ring finger protein 24; 81.4 0.78 2.7E-05 38.4 2.6 46 200-252 14-60 (74)
81 1vj2_A Novel manganese-contain 81.3 0.62 2.1E-05 42.8 2.1 47 815-867 65-111 (126)
82 3fl2_A E3 ubiquitin-protein li 81.1 0.68 2.3E-05 42.8 2.3 47 200-254 51-97 (124)
83 4axo_A EUTQ, ethanolamine util 80.9 0.71 2.4E-05 45.4 2.5 61 815-882 80-140 (151)
84 1t1h_A Gspef-atpub14, armadill 80.7 1.2 4.3E-05 37.5 3.7 46 200-253 7-52 (78)
85 2ckl_B Ubiquitin ligase protei 80.7 0.82 2.8E-05 44.3 2.8 47 201-254 54-100 (165)
86 4ic3_A E3 ubiquitin-protein li 80.5 1.2 4.2E-05 37.9 3.6 41 200-253 23-64 (74)
87 2lri_C Autoimmune regulator; Z 80.2 1.4 4.9E-05 37.6 3.9 49 199-252 10-58 (66)
88 1jm7_A BRCA1, breast cancer ty 80.2 0.77 2.6E-05 41.2 2.3 48 200-253 20-67 (112)
89 1x82_A Glucose-6-phosphate iso 80.0 0.87 3E-05 45.4 2.9 40 840-879 117-156 (190)
90 2o8q_A Hypothetical protein; c 79.8 0.9 3.1E-05 41.7 2.7 60 815-880 60-120 (134)
91 2xeu_A Ring finger protein 4; 79.6 0.39 1.3E-05 38.7 0.1 46 201-253 3-53 (64)
92 3lwc_A Uncharacterized protein 79.2 0.86 3E-05 42.3 2.4 37 841-879 76-113 (119)
93 1z6u_A NP95-like ring finger p 78.7 0.92 3.1E-05 44.0 2.5 48 200-255 77-124 (150)
94 1jm7_B BARD1, BRCA1-associated 78.4 2.3 8E-05 38.9 5.0 45 199-253 20-64 (117)
95 2ea6_A Ring finger protein 4; 78.1 0.64 2.2E-05 38.0 1.0 46 201-253 15-65 (69)
96 4i4a_A Similar to unknown prot 78.0 1.9 6.5E-05 39.0 4.3 56 837-896 67-124 (128)
97 1wfl_A Zinc finger protein 216 78.0 1.8 6.2E-05 38.3 3.8 33 201-238 25-57 (74)
98 3bcw_A Uncharacterized protein 77.6 0.83 2.8E-05 43.0 1.8 30 844-873 89-118 (123)
99 2lbm_A Transcriptional regulat 77.6 1 3.4E-05 44.2 2.4 52 197-251 59-115 (142)
100 2bnm_A Epoxidase; oxidoreducta 77.3 0.99 3.4E-05 44.2 2.3 45 815-865 137-185 (198)
101 3rns_A Cupin 2 conserved barre 77.3 0.87 3E-05 46.4 1.9 48 815-868 170-218 (227)
102 1g25_A CDK-activating kinase a 77.3 1.4 4.8E-05 36.0 2.8 47 201-253 3-52 (65)
103 2ct2_A Tripartite motif protei 76.8 1.1 3.7E-05 38.4 2.2 51 200-254 14-66 (88)
104 3a1b_A DNA (cytosine-5)-methyl 76.4 1.8 6.3E-05 43.2 3.9 52 198-252 76-133 (159)
105 1y3t_A Hypothetical protein YX 76.4 1.1 3.8E-05 47.2 2.5 51 837-888 252-302 (337)
106 2ecl_A Ring-box protein 2; RNF 76.3 2.4 8.1E-05 36.7 4.2 30 217-253 44-73 (81)
107 4h7l_A Uncharacterized protein 76.0 0.42 1.4E-05 47.5 -0.8 47 813-864 60-108 (157)
108 1qwr_A Mannose-6-phosphate iso 76.0 0.91 3.1E-05 49.3 1.7 17 846-862 162-178 (319)
109 1fi2_A Oxalate oxidase, germin 75.8 1.7 5.9E-05 43.5 3.6 39 842-880 119-157 (201)
110 3i7d_A Sugar phosphate isomera 75.8 1.5 5.3E-05 42.4 3.2 59 816-879 62-122 (163)
111 2ecn_A Ring finger protein 141 75.7 0.63 2.1E-05 38.6 0.3 43 200-252 14-56 (70)
112 1zx5_A Mannosephosphate isomer 75.2 0.99 3.4E-05 48.7 1.7 18 845-862 161-178 (300)
113 3ng2_A RNF4, snurf, ring finge 75.1 0.94 3.2E-05 37.3 1.2 49 199-254 8-61 (71)
114 2y1n_A E3 ubiquitin-protein li 75.0 2.2 7.6E-05 47.9 4.5 47 200-254 331-377 (389)
115 1wil_A KIAA1045 protein; ring 74.9 1.9 6.5E-05 39.2 3.2 53 199-252 13-75 (89)
116 2f4p_A Hypothetical protein TM 74.6 1.7 5.7E-05 41.3 3.0 35 844-878 89-123 (147)
117 2ecg_A Baculoviral IAP repeat- 73.9 2 6.9E-05 36.5 3.0 41 200-253 24-65 (75)
118 3ztg_A E3 ubiquitin-protein li 73.2 1.5 5.2E-05 38.1 2.2 48 200-253 12-59 (92)
119 3o36_A Transcription intermedi 72.3 5 0.00017 39.9 5.9 49 200-253 3-51 (184)
120 2pv0_B DNA (cytosine-5)-methyl 71.8 2.6 8.8E-05 47.4 4.0 52 198-252 90-147 (386)
121 1o4t_A Putative oxalate decarb 71.7 1.4 4.7E-05 41.0 1.6 31 837-867 91-121 (133)
122 2vqa_A SLL1358 protein, MNCA; 70.5 1.4 4.9E-05 47.3 1.6 55 843-898 279-333 (361)
123 3rns_A Cupin 2 conserved barre 70.3 1.5 5.1E-05 44.7 1.6 55 813-873 52-106 (227)
124 1rmd_A RAG1; V(D)J recombinati 70.1 1.8 6.2E-05 39.4 2.0 45 201-253 23-67 (116)
125 1rc6_A Hypothetical protein YL 70.0 1.4 4.6E-05 45.7 1.3 48 815-867 196-243 (261)
126 2wfp_A Mannose-6-phosphate iso 69.8 1.5 5.3E-05 49.0 1.7 15 847-861 245-259 (394)
127 1v87_A Deltex protein 2; ring- 69.4 1.7 6E-05 39.2 1.7 38 215-254 55-92 (114)
128 2pyt_A Ethanolamine utilizatio 68.9 2.3 7.8E-05 40.3 2.5 35 839-873 90-124 (133)
129 1y3t_A Hypothetical protein YX 68.7 2 7E-05 45.2 2.3 49 837-886 80-128 (337)
130 2l5u_A Chromodomain-helicase-D 68.6 3 0.0001 34.8 2.9 49 199-252 9-57 (61)
131 3u5n_A E3 ubiquitin-protein li 68.6 4.3 0.00015 41.2 4.6 50 199-253 5-54 (207)
132 1e4u_A Transcriptional repress 68.5 2.8 9.5E-05 36.6 2.7 48 201-255 11-61 (78)
133 1wfp_A Zinc finger (AN1-like) 68.4 5.5 0.00019 35.3 4.5 34 200-238 24-57 (74)
134 4ap4_A E3 ubiquitin ligase RNF 68.3 3.1 0.00011 37.8 3.2 48 199-253 70-122 (133)
135 3h7j_A Bacilysin biosynthesis 68.0 2.1 7.1E-05 44.0 2.1 48 814-867 50-98 (243)
136 1pmi_A PMI, phosphomannose iso 67.5 1.8 6.3E-05 49.1 1.7 16 846-861 270-285 (440)
137 2yql_A PHD finger protein 21A; 67.0 1 3.5E-05 36.9 -0.3 49 199-252 7-55 (56)
138 1f62_A Transcription factor WS 67.0 4.7 0.00016 32.1 3.6 47 203-252 2-49 (51)
139 1juh_A Quercetin 2,3-dioxygena 66.8 1.9 6.6E-05 47.0 1.7 70 814-889 66-140 (350)
140 1sef_A Conserved hypothetical 66.7 2 6.8E-05 44.9 1.7 31 837-867 216-246 (274)
141 3hct_A TNF receptor-associated 66.1 1.8 6.2E-05 39.7 1.1 45 200-252 17-61 (118)
142 4e2q_A Ureidoglycine aminohydr 65.4 2.1 7E-05 45.8 1.5 29 837-865 220-248 (266)
143 1j58_A YVRK protein; cupin, de 65.2 2.2 7.4E-05 46.4 1.7 27 841-867 300-326 (385)
144 2vpv_A Protein MIF2, MIF2P; nu 64.9 3 0.0001 41.6 2.5 29 839-867 125-153 (166)
145 4diq_A Lysine-specific demethy 64.7 3.8 0.00013 47.3 3.6 42 837-878 223-266 (489)
146 2d40_A Z3393, putative gentisa 64.4 3.2 0.00011 45.4 2.9 40 839-878 136-175 (354)
147 2yho_A E3 ubiquitin-protein li 64.0 5.1 0.00018 34.7 3.5 41 200-253 17-58 (79)
148 2xdv_A MYC-induced nuclear ant 63.5 3.9 0.00013 46.4 3.5 30 837-866 194-223 (442)
149 1wgm_A Ubiquitin conjugation f 63.3 13 0.00046 33.5 6.3 46 200-253 21-66 (98)
150 1fp0_A KAP-1 corepressor; PHD 63.2 3.1 0.00011 37.7 2.1 50 198-252 22-71 (88)
151 1mm2_A MI2-beta; PHD, zinc fin 62.9 2.7 9.3E-05 35.1 1.5 50 198-252 6-55 (61)
152 1bor_A Transcription factor PM 61.8 3 0.0001 33.5 1.6 43 199-253 4-46 (56)
153 4ap4_A E3 ubiquitin ligase RNF 61.8 3.9 0.00013 37.1 2.5 47 200-253 6-57 (133)
154 2vje_A E3 ubiquitin-protein li 61.7 3.5 0.00012 34.3 1.9 47 200-253 7-54 (64)
155 1x4w_A Hypothetical protein FL 61.3 3.5 0.00012 35.9 1.9 33 201-238 15-50 (67)
156 3v43_A Histone acetyltransfera 60.9 3.8 0.00013 37.9 2.3 51 199-252 59-111 (112)
157 1sq4_A GLXB, glyoxylate-induce 60.3 2.9 0.0001 44.1 1.6 31 837-867 103-133 (278)
158 2ea5_A Cell growth regulator w 59.1 9.2 0.00032 32.2 4.2 42 199-253 13-55 (68)
159 3nw4_A Gentisate 1,2-dioxygena 58.8 4.4 0.00015 45.2 2.7 29 839-867 139-167 (368)
160 3t6p_A Baculoviral IAP repeat- 58.7 6.8 0.00023 43.2 4.1 42 199-253 293-335 (345)
161 3bu7_A Gentisate 1,2-dioxygena 58.5 4.3 0.00015 45.6 2.6 29 838-866 328-356 (394)
162 1sfn_A Conserved hypothetical 58.4 3.4 0.00012 42.6 1.7 32 836-867 198-229 (246)
163 1dgw_A Canavalin; duplicated s 58.2 4.5 0.00016 39.8 2.4 27 841-867 82-108 (178)
164 1zrr_A E-2/E-2' protein; nicke 56.6 7.3 0.00025 39.1 3.7 37 843-879 123-159 (179)
165 1joc_A EEA1, early endosomal a 55.9 2.2 7.4E-05 40.6 -0.3 36 200-236 68-105 (125)
166 2vqa_A SLL1358 protein, MNCA; 55.7 3.2 0.00011 44.5 1.0 25 842-866 96-120 (361)
167 2ro1_A Transcription intermedi 55.5 4.2 0.00014 41.0 1.7 48 201-253 2-49 (189)
168 2ct7_A Ring finger protein 31; 54.7 6.6 0.00022 34.7 2.6 37 324-360 18-59 (86)
169 2d5f_A Glycinin A3B4 subunit; 53.6 5.3 0.00018 46.0 2.4 32 847-878 118-149 (493)
170 2ysm_A Myeloid/lymphoid or mix 53.4 9.4 0.00032 34.9 3.5 58 199-262 5-63 (111)
171 1sfn_A Conserved hypothetical 53.3 4.4 0.00015 41.8 1.5 31 838-868 82-112 (246)
172 2c2l_A CHIP, carboxy terminus 53.3 4.5 0.00015 41.3 1.5 47 200-254 207-253 (281)
173 3es1_A Cupin 2, conserved barr 52.8 6 0.00021 39.5 2.3 35 843-878 119-153 (172)
174 2yw8_A RUN and FYVE domain-con 52.8 2.5 8.6E-05 37.2 -0.4 37 199-236 17-55 (82)
175 2vje_B MDM4 protein; proto-onc 52.5 5.8 0.0002 32.8 1.8 47 200-253 6-53 (63)
176 3asl_A E3 ubiquitin-protein li 51.2 6.5 0.00022 33.8 1.9 48 203-252 20-68 (70)
177 2puy_A PHD finger protein 21A; 50.8 3.6 0.00012 34.0 0.3 48 199-251 3-50 (60)
178 2e9q_A 11S globulin subunit be 50.8 5.5 0.00019 45.5 1.9 35 846-880 131-165 (459)
179 4b29_A Dimethylsulfoniopropion 50.7 5.1 0.00018 41.8 1.5 46 815-866 149-195 (217)
180 3t7l_A Zinc finger FYVE domain 50.6 5.3 0.00018 35.8 1.4 36 199-235 18-55 (90)
181 3shb_A E3 ubiquitin-protein li 49.6 5.9 0.0002 34.9 1.4 48 203-252 28-76 (77)
182 1z2q_A LM5-1; membrane protein 49.5 6.1 0.00021 34.9 1.6 36 199-235 19-56 (84)
183 1vr3_A Acireductone dioxygenas 49.2 10 0.00035 38.7 3.3 37 843-879 128-164 (191)
184 3htk_C E3 SUMO-protein ligase 48.9 20 0.00067 38.6 5.5 50 199-254 179-230 (267)
185 1sq4_A GLXB, glyoxylate-induce 48.3 5.5 0.00019 42.1 1.3 32 836-867 224-255 (278)
186 1rc6_A Hypothetical protein YL 48.1 8 0.00027 39.9 2.4 30 838-867 95-124 (261)
187 4e2q_A Ureidoglycine aminohydr 48.0 5.8 0.0002 42.3 1.4 24 843-866 110-133 (266)
188 1x4u_A Zinc finger, FYVE domai 47.7 5.7 0.00019 35.1 1.1 37 199-236 12-50 (84)
189 3hcs_A TNF receptor-associated 47.2 6.1 0.00021 38.3 1.3 45 200-252 17-61 (170)
190 2k16_A Transcription initiatio 46.7 11 0.00038 32.2 2.7 50 200-252 17-67 (75)
191 3c3v_A Arachin ARAH3 isoform; 46.5 7.6 0.00026 45.0 2.1 34 847-880 131-164 (510)
192 2kre_A Ubiquitin conjugation f 46.1 13 0.00044 33.7 3.2 45 200-253 28-72 (100)
193 1sef_A Conserved hypothetical 46.1 8.8 0.0003 40.1 2.4 30 838-867 98-127 (274)
194 1y02_A CARP2, FYVE-ring finger 45.8 5.6 0.00019 37.9 0.8 37 199-236 17-55 (120)
195 3dpl_R Ring-box protein 1; ubi 45.4 15 0.00051 33.8 3.5 28 219-253 71-98 (106)
196 2d40_A Z3393, putative gentisa 45.3 9.8 0.00033 41.6 2.7 27 839-865 303-329 (354)
197 4gne_A Histone-lysine N-methyl 44.5 11 0.00038 35.2 2.5 59 194-263 8-68 (107)
198 3ask_A E3 ubiquitin-protein li 44.4 6.4 0.00022 41.3 1.0 48 203-252 176-224 (226)
199 1fxz_A Glycinin G1; proglycini 43.9 8.8 0.0003 44.0 2.1 30 844-873 115-144 (476)
200 2e6r_A Jumonji/ARID domain-con 43.8 4.3 0.00015 36.7 -0.4 52 198-252 13-65 (92)
201 2e6s_A E3 ubiquitin-protein li 43.5 9.5 0.00033 33.5 1.8 48 203-252 28-76 (77)
202 2ct0_A Non-SMC element 1 homol 43.4 35 0.0012 29.7 5.3 49 199-253 13-61 (74)
203 3bu7_A Gentisate 1,2-dioxygena 43.1 11 0.00036 42.4 2.6 27 838-864 158-184 (394)
204 2arc_A ARAC, arabinose operon 42.7 14 0.00048 34.0 3.0 30 837-866 51-80 (164)
205 1wff_A Riken cDNA 2810002D23 p 41.7 25 0.00086 31.9 4.2 35 199-238 23-58 (85)
206 3cjx_A Protein of unknown func 41.4 12 0.0004 37.1 2.3 33 847-879 85-126 (165)
207 4a0k_B E3 ubiquitin-protein li 40.0 6.7 0.00023 37.0 0.3 26 220-252 83-108 (117)
208 2y0o_A Probable D-lyxose ketol 39.7 11 0.00039 37.9 1.9 41 841-883 117-158 (175)
209 1wg2_A Zinc finger (AN1-like) 39.4 20 0.00069 30.9 3.1 33 201-238 15-47 (64)
210 3zyq_A Hepatocyte growth facto 38.4 55 0.0019 33.6 6.9 61 301-361 129-197 (226)
211 1wfk_A Zinc finger, FYVE domai 38.0 15 0.0005 33.0 2.2 36 199-235 7-44 (88)
212 2a20_A Regulating synaptic mem 37.7 2.7 9.1E-05 35.9 -2.5 51 198-251 6-58 (62)
213 3v43_A Histone acetyltransfera 37.3 13 0.00045 34.3 1.8 46 212-262 23-70 (112)
214 2ri7_A Nucleosome-remodeling f 37.2 8.2 0.00028 37.8 0.5 48 199-253 6-59 (174)
215 1vq8_T 50S ribosomal protein L 37.0 10 0.00034 36.3 1.0 42 815-858 14-55 (120)
216 1uij_A Beta subunit of beta co 36.9 12 0.0004 42.1 1.7 46 815-865 65-114 (416)
217 3zyq_A Hepatocyte growth facto 36.8 13 0.00045 38.3 1.9 33 202-235 165-199 (226)
218 1wev_A Riken cDNA 1110020M19; 36.5 3.7 0.00013 36.7 -1.9 53 199-252 14-71 (88)
219 1dvp_A HRS, hepatocyte growth 36.4 12 0.00043 38.1 1.7 34 201-235 161-196 (220)
220 1fxz_A Glycinin G1; proglycini 36.3 15 0.0005 42.2 2.4 67 812-878 352-419 (476)
221 2kr4_A Ubiquitin conjugation f 36.2 15 0.0005 32.2 1.8 44 200-252 13-56 (85)
222 1wen_A Inhibitor of growth fam 36.0 19 0.00066 31.1 2.5 47 200-252 15-64 (71)
223 1vfy_A Phosphatidylinositol-3- 35.8 17 0.0006 31.1 2.2 33 202-235 12-46 (73)
224 3j21_U 50S ribosomal protein L 33.8 12 0.00042 35.7 1.0 40 816-857 18-57 (121)
225 3mpx_A FYVE, rhogef and PH dom 32.2 9.6 0.00033 41.9 0.0 37 199-236 373-411 (434)
226 2ea7_A 7S globulin-1; beta bar 31.7 19 0.00066 40.7 2.4 26 841-866 102-127 (434)
227 3c3v_A Arachin ARAH3 isoform; 31.2 20 0.00067 41.6 2.4 102 775-878 351-453 (510)
228 2yt5_A Metal-response element- 31.2 5.5 0.00019 33.2 -1.6 49 199-251 4-59 (66)
229 1wfh_A Zinc finger (AN1-like) 31.2 24 0.00081 30.5 2.3 33 201-238 15-47 (64)
230 1wim_A KIAA0161 protein; ring 31.2 13 0.00044 32.7 0.6 51 201-252 5-60 (94)
231 1v5n_A PDI-like hypothetical p 30.9 17 0.00057 32.6 1.4 31 330-360 47-77 (89)
232 2cav_A Protein (canavalin); vi 29.5 25 0.00085 40.0 2.8 27 842-868 128-155 (445)
233 2vrw_B P95VAV, VAV1, proto-onc 29.1 29 0.00099 37.9 3.1 38 326-363 353-393 (406)
234 2zet_C Melanophilin; complex, 28.9 16 0.00054 36.1 0.9 35 329-363 67-104 (153)
235 1j58_A YVRK protein; cupin, de 28.8 26 0.00089 37.9 2.7 25 843-867 123-147 (385)
236 3nw0_A Non-structural maintena 28.7 44 0.0015 34.9 4.2 49 199-253 178-226 (238)
237 2o1q_A Putative acetyl/propion 28.5 20 0.0007 34.1 1.6 54 813-872 59-115 (145)
238 2d5f_A Glycinin A3B4 subunit; 27.9 15 0.00051 42.4 0.6 121 775-899 346-467 (493)
239 1xwh_A Autoimmune regulator; P 27.5 13 0.00045 31.3 0.0 48 199-251 6-53 (66)
240 1wem_A Death associated transc 27.1 40 0.0014 28.9 3.0 46 200-252 15-69 (76)
241 1zbd_B Rabphilin-3A; G protein 26.1 39 0.0013 32.6 3.1 37 328-364 53-92 (134)
242 3kv5_D JMJC domain-containing 25.0 20 0.00068 41.3 0.9 66 505-580 148-216 (488)
243 2yw8_A RUN and FYVE domain-con 25.0 40 0.0014 29.5 2.7 35 326-361 15-52 (82)
244 3lqh_A Histone-lysine N-methyl 24.6 48 0.0017 33.5 3.6 47 201-253 2-63 (183)
245 2jmo_A Parkin; IBR, E3 ligase, 24.3 48 0.0016 28.9 3.1 34 328-361 23-67 (80)
246 3kgl_A Cruciferin; 11S SEED gl 24.0 29 0.00098 39.9 2.0 22 847-868 150-171 (466)
247 3avr_A Lysine-specific demethy 24.0 50 0.0017 38.6 3.9 37 327-363 455-496 (531)
248 2ffw_A Midline-1; B-BOX, ring 23.9 1.2E+02 0.0041 26.2 5.5 37 199-236 28-66 (78)
249 2o35_A Hypothetical protein DU 23.8 23 0.00077 33.1 0.9 13 225-237 42-54 (105)
250 3fyb_A Protein of unknown func 23.6 23 0.00078 33.1 0.9 13 225-237 41-53 (104)
251 2kwj_A Zinc finger protein DPF 23.0 17 0.00059 33.7 -0.1 59 201-263 1-68 (114)
252 3qac_A 11S globulin SEED stora 22.9 36 0.0012 39.1 2.5 34 847-880 135-168 (465)
253 2ku3_A Bromodomain-containing 22.8 30 0.001 29.9 1.4 49 198-251 13-64 (71)
254 3nw4_A Gentisate 1,2-dioxygena 22.6 42 0.0014 37.4 2.9 30 840-869 315-344 (368)
255 1wep_A PHF8; structural genomi 22.3 1.7E+02 0.0058 25.2 6.2 47 199-252 10-62 (79)
256 1z2q_A LM5-1; membrane protein 22.2 63 0.0022 28.3 3.4 35 326-361 17-54 (84)
257 2f42_A STIP1 homology and U-bo 21.9 33 0.0011 34.6 1.7 44 201-252 106-149 (179)
258 2xb1_A Pygopus homolog 2, B-ce 21.6 23 0.00077 32.7 0.4 46 201-252 3-60 (105)
259 1x4u_A Zinc finger, FYVE domai 20.8 48 0.0017 29.1 2.4 35 326-361 10-47 (84)
260 2yu4_A E3 SUMO-protein ligase 20.5 29 0.00098 30.7 0.9 50 201-252 7-58 (94)
261 2l43_A N-teminal domain from h 20.3 36 0.0012 30.4 1.4 48 200-252 24-74 (88)
262 3o70_A PHD finger protein 13; 20.0 22 0.00076 30.3 0.0 50 198-252 16-66 (68)
No 1
>2ypd_A Probable JMJC domain-containing histone demethyla PROT EIN 2C; oxidoreductase; 2.10A {Homo sapiens}
Probab=100.00 E-value=4.4e-129 Score=1060.90 Aligned_cols=353 Identities=32% Similarity=0.537 Sum_probs=273.4
Q ss_pred CCCcCchhhHHHHHHHhhcCCCEEEEccccccCCCCCChhHHHHHHhhhccccccccCCceeEeecCCCceeecchhhhh
Q 002330 496 STKIQEDEELFRFQKHWIKGEPVIVRNVLDKVTGLSWEPMVMWRALCENVDSEVSSKMSEVKAIDCLASCEVEISTRQFF 575 (935)
Q Consensus 496 ~~di~~~~~l~hFQ~hW~kGePVIVr~Vl~~~s~lsW~P~~mwra~~e~~~~~~~d~~~~vkaiDCld~~eVei~i~qFf 575 (935)
..|..+.+|+.|||+||++|||||||||++++++++|+|++||++|++. .+++|||++|++++|++++||
T Consensus 15 L~d~~~~~n~~~Fq~hW~~GePViVs~V~~~~~~~~W~Pe~~~~~~gd~----------~~~lidC~~~~~~~i~v~~Ff 84 (392)
T 2ypd_A 15 LKDYKNSSNWKLFKECWKQGQPAVVSGVHKKMNISLWKAESISLDFGDH----------QADLLNCKDSIISNANVKEFW 84 (392)
T ss_dssp ECCTTCTTHHHHHHHHHTTTCCEEECCHHHHSCGGGGSHHHHHHHHTTS----------CCCCEETTTCCBCSCCHHHHH
T ss_pred ecCCCCcccHHHHHHHHhCCCcEEEechhhhCcCCccCHHHHHHHhcCc----------eeeeeeCCCCccccCcHHHHh
Confidence 3455566899999999999999999999999999999999999998642 367899999999999999999
Q ss_pred ccccCCc---cCCCCccceeecCCCCCCCchhhhcccchHHHHhCCCCcCcCCCCCccccccccCCCCCCCCCCCcchhh
Q 002330 576 KGYTQGR---TYDNFWPEMLKLKDWPPSDKFEDLMPRHCDEFISALPFQEYSDPRAGILNLAVKLPSGVLKPDLGPKTYI 652 (935)
Q Consensus 576 ~Gy~~gr---~~~~~wp~mLKLKDWPps~~F~e~lP~h~~eFi~aLP~~EYT~pr~G~LNLAakLP~~~lkPDLGPK~YI 652 (935)
+||++++ +++++||+|||||||||+++|+++||+||+|||++|||||||||+ |+||||++||+++++|||||||||
T Consensus 85 ~Gf~~~~~r~~~~~g~p~~LKLKDWPp~~~F~e~lP~~~~df~~~LPlpEYt~p~-G~LNLAs~LP~~~~kPDLGPK~Yi 163 (392)
T 2ypd_A 85 DGFEEVSKRQKNKSGETVVLKLKDWPSGEDFKTMMPARYEDLLKSLPLPEYCNPE-GKFNLASHLPGFFVRPDLGPRLCS 163 (392)
T ss_dssp HTSSBGGGC------CCCCEEECSSSBTHHHHHHSHHHHHHHHHHCSSHHHHSTT-CTTCCTTTSCGGGCC---CCEEEE
T ss_pred hhccccccCCcCCCCCcceeeecCCCChHHHHHHhHHHHHHHHHcCCchHhhCCC-ccchHHHhCCCCCCCCCCCcchhh
Confidence 9999875 357999999999999999999999999999999999999999986 999999999999999999999999
Q ss_pred ccccccccCCCCCcccccccccccchhhhcccccccchHhHHHHHHHHHHHHhhhhhhhhccCCCCccccCCCCCCCCCC
Q 002330 653 AYGVAEELGRGDSVTKLHCDMSDAVNILTHTEEVLLTEEQHSAVERLKKEHRAQDLKENLVQDGMDESIEEPNSDNNKED 732 (935)
Q Consensus 653 AYG~~eelGrGDSvTkLH~DmSDAVNIL~htaev~~~~~q~~~i~kl~~k~~~q~~~e~~~~~~~~~~~~e~~~~~~~~~ 732 (935)
|||+++++|+|+|||||||||||||||||||++++... .... +...+++.++ +
T Consensus 164 AYG~~~~~~~~~gvT~LH~DmsDaVNiL~h~~~~~~~~-~~~~-~~~l~~~~~~-------------------------~ 216 (392)
T 2ypd_A 164 AYGVVAAKDHDIGTTNLHIEVSDVVNILVYVGIAKGNG-ILSK-AGILKKFEEE-------------------------D 216 (392)
T ss_dssp ECCSTTTTCTTCCSEEEEECSSEEEEEEEEEECCBCTT-CCCH-HHHHHHHHTS-------------------------C
T ss_pred hcCcchhcccCCCcceeeeehhhhhhhhheecccCccc-cchh-hhhhhhhhhc-------------------------c
Confidence 99999999999999999999999999999998654322 1111 1122222211 1
Q ss_pred CCcccccccccCCCCcccccccccccccCCccccCCCCCCccCCCceEEEeecCCChhHHHHHHHHHHHhhccccCCCCC
Q 002330 733 TDVSEINDSELLPSGIRGEFKMSRDEMQGTAFTCPHSEGTMVESGGALWDIFRRQDVPKLEAYLRKHFKEFRHVYCSPVE 812 (935)
Q Consensus 733 ~d~~~i~~~~~~~~~~~~~~k~~~~~~~g~~~~~~~~~~~~~~~~GAlWDIFRreDvpKLreyL~kh~~Ef~h~~~~pv~ 812 (935)
+|... + .++.+ ..+.+||+||||||||++|||+||++|++||. .++.
T Consensus 217 ~d~~~-----------~--~r~~~----------------~~~~~GAlW~Ifr~~D~~klr~~L~~~~~e~~----~~~~ 263 (392)
T 2ypd_A 217 LDDIL-----------R--KRLKD----------------SSEIPGALWHIYAGKDVDKIREFLQKISKEQG----LEVL 263 (392)
T ss_dssp CCHHH-----------H--HHHTC----------------TTCCEEEEEEEECGGGHHHHHHHHHHHHHHHC--------
T ss_pred ccHHH-----------h--hhccC----------------CCCCCCceeeeeCHhhHHHHHHHHHHHHHhhC----CCcc
Confidence 22000 0 00110 13578999999999999999999999999984 5678
Q ss_pred cccCCcccCccccCHHHHHHHHHHhCccceEEEeecCceeEecCCCccccccccccceecccccCccchHHHHHHHHHhh
Q 002330 813 QVIHPIHDQCFYLSSEHKKKLKEEFGVEPWTFEQKLGEAVFIPAGCPHQVRNLKSCTKVAVDFVSPENVDECLRLTKEFR 892 (935)
Q Consensus 813 ~v~dPIHDQ~fYLt~ehk~rLkEEyGVepWtf~Q~lGEAVFIPAGCPHQVRNLkSCIKVAlDFVSPEnV~eC~rLteEfR 892 (935)
++.||||||+||||++||++|+|||||+||||+|++|||||||||||||||||+||||||+||||||||.+|++||+|||
T Consensus 264 ~~~dPihdq~~yL~~~~r~~L~ee~gv~~~~~~Q~~GeavfiPaG~~HQV~Nl~~~i~va~df~spe~~~~c~~lt~E~R 343 (392)
T 2ypd_A 264 PEHDPIRDQSWYVNKKLRQRLLEEYGVRTCTLIQFLGDAIVLPAGALHQVQNFHSCIQVTEDFVSPEHLVESFHLTQELR 343 (392)
T ss_dssp --CCHHHHTCCCCCHHHHHHHHHHHCCCCEEEEEETTCEEEECTTCEEEEEESSEEEEEEEEECCGGGHHHHHHHHHHC-
T ss_pred CCCCcCcCCCEEecHHHHHHHHHhcCCeeEEEEEcCCCEEEecCCCHHHHhcccchhhHhhhhcChhhHHHHHHHHHHHh
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCcccccccchhhhhheehhhhhhhhh
Q 002330 893 LLPKNHRAREDKLEVYLVFIKRKCYVHE 920 (935)
Q Consensus 893 ~Lp~~H~akEDKLeVkkm~l~~~~~~~e 920 (935)
+|| +|++||||||||||+||++..+..
T Consensus 344 ~l~-~~~~~edkLqvk~m~~~av~~av~ 370 (392)
T 2ypd_A 344 LLK-EEINYDDKLQVKNILYHAVKEMVR 370 (392)
T ss_dssp ----------------------------
T ss_pred hcc-hhhhhHHHHHHHHHHHHHHHHHHH
Confidence 996 699999999999999999655443
No 2
>4gjz_A Lysine-specific demethylase 8; JMJC, beta barrel, Fe(II) and 2-oxoglutarate binding, oxidor; HET: AKG BME; 1.05A {Homo sapiens} PDB: 4gjy_A* 4aap_A* 3uyj_A*
Probab=99.15 E-value=1.7e-11 Score=122.98 Aligned_cols=36 Identities=28% Similarity=0.266 Sum_probs=32.3
Q ss_pred CccceEEEeecCceeEecCCCccccccccccceecc
Q 002330 838 GVEPWTFEQKLGEAVFIPAGCPHQVRNLKSCTKVAV 873 (935)
Q Consensus 838 GVepWtf~Q~lGEAVFIPAGCPHQVRNLkSCIKVAl 873 (935)
++.++.++|.+||++|||+|..|||+||..||.|..
T Consensus 197 ~~~~~~~~l~pGD~LyiP~gW~H~V~~l~~sisvn~ 232 (235)
T 4gjz_A 197 KAPFLSCILSPGEILFIPVKYWHYVRALDLSFSVSF 232 (235)
T ss_dssp GCCCEEEEECTTCEEEECTTCEEEEEESSSEEEEEE
T ss_pred CCCcEEEEECCCCEEEeCCCCcEEEEECCCEEEEEE
Confidence 357899999999999999999999999999887753
No 3
>3k2o_A Bifunctional arginine demethylase and lysyl-hydro JMJD6; structural genomics consortium, SGC, chromatin regulator, developmental protein; 1.75A {Homo sapiens} PDB: 3ld8_A 3ldb_A*
Probab=99.09 E-value=4.3e-10 Score=123.05 Aligned_cols=53 Identities=32% Similarity=0.444 Sum_probs=50.4
Q ss_pred CccceEEEeecCceeEecCCCccccccccccceecccccCccchHHHHHHHHH
Q 002330 838 GVEPWTFEQKLGEAVFIPAGCPHQVRNLKSCTKVAVDFVSPENVDECLRLTKE 890 (935)
Q Consensus 838 GVepWtf~Q~lGEAVFIPAGCPHQVRNLkSCIKVAlDFVSPEnV~eC~rLteE 890 (935)
+..++.++|.+||++|||+|-.|||+||..||.|+..|++|.|+...+++|-+
T Consensus 252 ~~~~~~~~l~pGd~l~iP~gw~H~v~~~~~sisv~~~f~~~~nl~~~~~~~~~ 304 (336)
T 3k2o_A 252 EFKPLEILQKPGETVFVPGGWWHVVLNLDTTIAITQNFASSTNFPVVWHKTVR 304 (336)
T ss_dssp GGCCEEEEECTTCEEEECTTCEEEEEESSCEEEEEEEECCTTTHHHHHHHHHH
T ss_pred cCceEEEEECCCCEEEeCCCCcEEEecCCCeEEEEcccCCcccHHHHHHHHHh
Confidence 46889999999999999999999999999999999999999999999999964
No 4
>3al5_A HTYW5, JMJC domain-containing protein C2ORF60; tRNA modification enzyme, unknown function; 2.50A {Homo sapiens} PDB: 3al6_A*
Probab=98.84 E-value=2.3e-09 Score=116.66 Aligned_cols=42 Identities=19% Similarity=0.216 Sum_probs=39.5
Q ss_pred ccceEEEeecCceeEecCCCccccccccccceecccccCccc
Q 002330 839 VEPWTFEQKLGEAVFIPAGCPHQVRNLKSCTKVAVDFVSPEN 880 (935)
Q Consensus 839 VepWtf~Q~lGEAVFIPAGCPHQVRNLkSCIKVAlDFVSPEn 880 (935)
+.++.+++.+||++|||+|..|||+||-.||.|..-|.++..
T Consensus 237 ~~~~~~~L~pGD~LyiP~gWwH~v~~l~~sisvn~~~~~~~~ 278 (338)
T 3al5_A 237 ARRYECSLEAGDVLFIPALWFHNVISEEFGVGVNIFWKHLPS 278 (338)
T ss_dssp CCEEEEEECTTCEEEECTTCEEEEEESSCEEEEEEEECSSCG
T ss_pred CCCEEEEECCCCEEEECCCCeEEEeeCCCEEEEEEEecCCcc
Confidence 579999999999999999999999999999999999988764
No 5
>2yu1_A JMJC domain-containing histone demethylation PROT; JMJC-domain-containing histone demethylases, oxidoreductase; HET: AKG; 2.70A {Homo sapiens} PDB: 2yu2_A
Probab=98.82 E-value=2.4e-08 Score=113.13 Aligned_cols=53 Identities=21% Similarity=0.201 Sum_probs=49.3
Q ss_pred hCccceEEEeecCceeEecCCCccccccccccceecccccCccchHHHHHHHH
Q 002330 837 FGVEPWTFEQKLGEAVFIPAGCPHQVRNLKSCTKVAVDFVSPENVDECLRLTK 889 (935)
Q Consensus 837 yGVepWtf~Q~lGEAVFIPAGCPHQVRNLkSCIKVAlDFVSPEnV~eC~rLte 889 (935)
+..+++.++|..||++|||+|.-|||.||..||-|+..|++.-|+..-+++++
T Consensus 261 ~~~~~~~v~l~pGE~LfIPsGWwH~V~nledsIait~NF~~~~nl~~~l~~~~ 313 (451)
T 2yu1_A 261 RVSDCQRIELKQGYTFVIPSGWIHAVYTPTDTLVFGGNFLHSFNIPMQLKIYN 313 (451)
T ss_dssp HSSCCEEEEECTTCEEEECTTCEEEEECSSCEEEEEEEECCSSSHHHHHHHHH
T ss_pred ccccceEEEECCCcEEEeCCCceEEEecCCCeEEEeeeeCCcccHHHHHHHHH
Confidence 34578999999999999999999999999999999999999999999888875
No 6
>3k3o_A PHF8, PHD finger protein 8; histone demethylase, chromatin modification, methylated H3K9, mental retardation, metal-BI phosphoprotein, zinc-finger; HET: AKG; 2.10A {Homo sapiens} PDB: 3k3n_A* 4do0_A* 2wwu_A*
Probab=98.82 E-value=3e-08 Score=109.92 Aligned_cols=79 Identities=22% Similarity=0.262 Sum_probs=60.1
Q ss_pred CccceEEEeecCceeEecCCCccccccccccceecccccCccchHHHHHHHH-HhhcCCcccccccchh---hhhheehh
Q 002330 838 GVEPWTFEQKLGEAVFIPAGCPHQVRNLKSCTKVAVDFVSPENVDECLRLTK-EFRLLPKNHRAREDKL---EVYLVFIK 913 (935)
Q Consensus 838 GVepWtf~Q~lGEAVFIPAGCPHQVRNLkSCIKVAlDFVSPEnV~eC~rLte-EfR~Lp~~H~akEDKL---eVkkm~l~ 913 (935)
..+++.++|..||++|||+|..|||.||..||-|+..|++..|+...++..+ |-|.= -.+|. ...+|++|
T Consensus 213 ~~~~~ev~l~pGEtLfIPsGWwH~V~nledSIai~~NFl~~~nl~~~l~~~~~E~~~~------~~~~f~fp~F~~~~w~ 286 (371)
T 3k3o_A 213 VDKCYKCSVKQGQTLFIPTGWIHAVLTPVDCLAFGGNFLHSLNIEMQLKAYEIEKRLS------TADLFRFPNFETICWY 286 (371)
T ss_dssp SSCCEEEEEETTCEEEECTTCEEEEEEEEEEEEEEEEECCSTTHHHHHHHHHHHHHHC----------CCCTTHHHHHHH
T ss_pred cCceEEEEECCCcEEEeCCCCeEEEecCCCeEEECCcccchhhHHHHHHHHHHHHhcC------CCcccccccHHHHHHH
Confidence 3689999999999999999999999999999999999999999999999876 43321 11222 23555666
Q ss_pred hhhhhhhhh
Q 002330 914 RKCYVHEIS 922 (935)
Q Consensus 914 ~~~~~~e~~ 922 (935)
.+-.+++.+
T Consensus 287 ~~~~~~~~~ 295 (371)
T 3k3o_A 287 VGKHILDIF 295 (371)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 655555543
No 7
>3kv4_A PHD finger protein 8; epigenetics, histone CODE, covalent histone modifications, jumonji demethylase, mental retardation, metal-binding, zinc; HET: M3L MLY OGA; 2.19A {Homo sapiens}
Probab=98.78 E-value=1.5e-08 Score=114.80 Aligned_cols=78 Identities=22% Similarity=0.277 Sum_probs=62.0
Q ss_pred ccceEEEeecCceeEecCCCccccccccccceecccccCccchHHHHHHHH-HhhcCCcccccccchhh---hhheehhh
Q 002330 839 VEPWTFEQKLGEAVFIPAGCPHQVRNLKSCTKVAVDFVSPENVDECLRLTK-EFRLLPKNHRAREDKLE---VYLVFIKR 914 (935)
Q Consensus 839 VepWtf~Q~lGEAVFIPAGCPHQVRNLkSCIKVAlDFVSPEnV~eC~rLte-EfR~Lp~~H~akEDKLe---Vkkm~l~~ 914 (935)
.+++.++|..||++|||+|..|||.||..||-|+..|++..|+..-++..+ |-|.- -.+|.. ..+|++|.
T Consensus 298 ~~~~~v~l~pGetlfIPsGWwH~V~nledsIai~~NF~~~~nl~~~l~~~~~E~~~~------~~~~~~~p~f~~~~w~~ 371 (447)
T 3kv4_A 298 DKCYKCSVKQGQTLFIPTGWIHAVLTPVDCLAFGGNFLHSLNIEMQLKAYEIEKRLS------TADLFRFPNFETICWYV 371 (447)
T ss_dssp SCCEEEEEETTCEEEECTTCEEEEEESSCEEEEEEEECCSTTHHHHHHHHHHHHHTT------CCGGGSCTTHHHHHHHH
T ss_pred cceEEEEECCCcEEecCCCCeEEEecCCCEEEEccccccccCHHHHHHHHHHHHhcC------CCccccccCHHHHHHHH
Confidence 589999999999999999999999999999999999999999999999887 43321 123333 35666666
Q ss_pred hhhhhhhh
Q 002330 915 KCYVHEIS 922 (935)
Q Consensus 915 ~~~~~e~~ 922 (935)
+-.+++.+
T Consensus 372 ~~~~~~~~ 379 (447)
T 3kv4_A 372 GKHILDIF 379 (447)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 66665544
No 8
>3kv5_D JMJC domain-containing histone demethylation protein 1D; epigenetics, histone CODE, jumonji lysine demethylase, metal-binding, zinc, zinc-finger; HET: OGA; 2.39A {Homo sapiens} PDB: 3kv6_A*
Probab=98.74 E-value=2.8e-08 Score=113.66 Aligned_cols=51 Identities=24% Similarity=0.386 Sum_probs=48.3
Q ss_pred ccceEEEeecCceeEecCCCccccccccccceecccccCccchHHHHHHHH
Q 002330 839 VEPWTFEQKLGEAVFIPAGCPHQVRNLKSCTKVAVDFVSPENVDECLRLTK 889 (935)
Q Consensus 839 VepWtf~Q~lGEAVFIPAGCPHQVRNLkSCIKVAlDFVSPEnV~eC~rLte 889 (935)
.+++.++|..||++|||+|..|||.||..||-|...|++..|+...++..+
T Consensus 333 ~~~~~~~l~pGe~lfIPsGWwH~V~nledsIai~~NF~~~~nl~~~l~~~~ 383 (488)
T 3kv5_D 333 DKCYKCVVKQGHTLFVPTGWIHAVLTSQDCMAFGGNFLHNLNIGMQLRCYE 383 (488)
T ss_dssp SCCEEEEEETTCEEEECTTCEEEEEEEEEEEEEEEEECCSTTHHHHHHHHH
T ss_pred cceEEEeeCCCCEEEeCCCceEEeeCCCCeEEEccccCCccCHHHHHHHHH
Confidence 589999999999999999999999999999999999999999999888654
No 9
>3kv9_A JMJC domain-containing histone demethylation protein 1D; jumonji domain lysine demethylase, metal-binding, zinc, zinc-finger; 2.29A {Homo sapiens} PDB: 3kva_A* 3kvb_A* 3u78_A*
Probab=98.72 E-value=7.1e-08 Score=107.75 Aligned_cols=52 Identities=23% Similarity=0.358 Sum_probs=48.3
Q ss_pred CccceEEEeecCceeEecCCCccccccccccceecccccCccchHHHHHHHH
Q 002330 838 GVEPWTFEQKLGEAVFIPAGCPHQVRNLKSCTKVAVDFVSPENVDECLRLTK 889 (935)
Q Consensus 838 GVepWtf~Q~lGEAVFIPAGCPHQVRNLkSCIKVAlDFVSPEnV~eC~rLte 889 (935)
..+++.++|..||++|||+|..|||.||..||-|...|+++.|+...++..+
T Consensus 241 ~~~~~~v~l~pGe~lfIPsGW~H~V~nledSIai~~NFl~~~nl~~~l~~~~ 292 (397)
T 3kv9_A 241 VDKCYKCVVKQGHTLFVPTGWIHAVLTSQDCMAFGGNFLHNLNIGMQLRCYE 292 (397)
T ss_dssp SSCCEEEEEETTCEEEECTTCEEEEEEEEEEEEEEEEECCSTTHHHHHHHHH
T ss_pred cCceEEEEECCCCEEEeCCCCeEEccCCcCeEEECCcccCchhHHHHHHHHH
Confidence 3589999999999999999999999999999999999999999998877654
No 10
>3d8c_A Hypoxia-inducible factor 1 alpha inhibitor; FIH, HIF, DSBH, oxygenase, transcription, inhibitor oxoglutarate, asparaginyl hydroxylase; HET: AKG; 2.10A {Homo sapiens} PDB: 2ilm_A* 2w0x_A* 1h2l_A* 1h2m_A* 1h2n_A* 1yci_A* 2cgn_A 2cgo_A* 1h2k_A* 2wa3_A* 2wa4_A* 3od4_A* 3p3n_A* 3p3p_A* 2yc0_A* 2y0i_A* 2yde_A* 1mze_A* 1mzf_A* 2xum_A* ...
Probab=98.70 E-value=4.8e-09 Score=114.80 Aligned_cols=40 Identities=20% Similarity=0.299 Sum_probs=36.4
Q ss_pred CccceEEEeecCceeEecCCCcccccccc-ccceecccccC
Q 002330 838 GVEPWTFEQKLGEAVFIPAGCPHQVRNLK-SCTKVAVDFVS 877 (935)
Q Consensus 838 GVepWtf~Q~lGEAVFIPAGCPHQVRNLk-SCIKVAlDFVS 877 (935)
.+.++.+++.+||++|||+|..|||+||. .++.|++.|..
T Consensus 257 ~~~~~~~~l~pGD~LyiP~gWwH~V~~l~d~~~sisvn~w~ 297 (349)
T 3d8c_A 257 NVVGYETVVGPGDVLYIPMYWWHHIESLLNGGITITVNFWY 297 (349)
T ss_dssp GCCEEEEEECTTCEEEECTTCEEEEEECTTSCCEEEEEEEE
T ss_pred cCCcEEEEECCCCEEEECCCCcEEEEEcCCCCcEEEEEEEc
Confidence 35799999999999999999999999998 58889988865
No 11
>3pua_A GRC5, PHD finger protein 2; alpha-ketoglutarate-Fe2+ dependent dioxygenases, histone TAI protein, protein binding; HET: OGA; 1.89A {Homo sapiens} PDB: 3pu3_A* 3ptr_B* 3pu8_B* 3pus_A*
Probab=98.61 E-value=1.9e-07 Score=104.27 Aligned_cols=79 Identities=19% Similarity=0.120 Sum_probs=61.7
Q ss_pred CccceEEEeecCceeEecCCCccccccccccceecccccCccchHHHHHHHH-HhhcCCcccccccchh---hhhheehh
Q 002330 838 GVEPWTFEQKLGEAVFIPAGCPHQVRNLKSCTKVAVDFVSPENVDECLRLTK-EFRLLPKNHRAREDKL---EVYLVFIK 913 (935)
Q Consensus 838 GVepWtf~Q~lGEAVFIPAGCPHQVRNLkSCIKVAlDFVSPEnV~eC~rLte-EfR~Lp~~H~akEDKL---eVkkm~l~ 913 (935)
..+++.++|..||++|||+|..|||.||..||-|...||+..|+..-++..+ |-|.= -.+|. ...+|++|
T Consensus 240 ~~~~~ev~l~pGEtlfIPsGWwH~V~nledSIai~gNFl~~~nl~~~l~~~~~E~~~~------~~~~f~fp~F~~~~wy 313 (392)
T 3pua_A 240 VDKCYKCIVKQGQTLFIPSGWIYATLTPVDCLAFAGHFLHSLSVEMQMRAYEVERRLK------LGSLTQFPNFETACWY 313 (392)
T ss_dssp SSCCEEEEEETTCEEEECTTCEEEEEEEEEEEEEEEEECCTTCHHHHHHHHHHHHHHT------CCCSSCCTTHHHHHHH
T ss_pred ccceEEEEECCCcEEeeCCCceEEEecCCCEEEEcCcccChhhHHHHHHHHHHHHHhC------CCccCcCCChHHHHHH
Confidence 3689999999999999999999999999999999999999999999988887 54421 11222 23556666
Q ss_pred hhhhhhhhh
Q 002330 914 RKCYVHEIS 922 (935)
Q Consensus 914 ~~~~~~e~~ 922 (935)
.+-.+++.+
T Consensus 314 ~~~~~l~~~ 322 (392)
T 3pua_A 314 MGKHLLEAF 322 (392)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 665555543
No 12
>3pur_A Lysine-specific demethylase 7 homolog; oxidoreductase-oxidoreductase inhibitor complex; HET: 2HG; 2.10A {Caenorhabditis elegans} PDB: 3n9l_A 3n9m_A* 3n9o_A* 3n9p_A* 3n9q_A* 3n9n_A* 3puq_A*
Probab=97.35 E-value=0.00011 Score=84.58 Aligned_cols=51 Identities=22% Similarity=0.234 Sum_probs=46.9
Q ss_pred ccceEEEeecCceeEecCCCccccccccccceecccccCccchHHHHHHHH
Q 002330 839 VEPWTFEQKLGEAVFIPAGCPHQVRNLKSCTKVAVDFVSPENVDECLRLTK 889 (935)
Q Consensus 839 VepWtf~Q~lGEAVFIPAGCPHQVRNLkSCIKVAlDFVSPEnV~eC~rLte 889 (935)
.....++|..||++|||+|..|+|.|+..||-|...||+..||..-+++++
T Consensus 363 ~~~~~v~l~pGEtlfIPsGW~HaV~tleDSIaiggNFl~~~nl~~qlri~~ 413 (528)
T 3pur_A 363 GAVKRVVIKEGQTLLIPAGWIHAVLTPVDSLVFGGNFLHLGNLEMQMRVYH 413 (528)
T ss_dssp TCCEEEEEETTCEEEECTTCEEEEEEEEEEEEEEEEECCGGGHHHHHHHHH
T ss_pred ccEEEEEECCCCEEEecCCceEEEecCCCeEEEcCcccchhhHHHHHHHHH
Confidence 345689999999999999999999999999999999999999999888664
No 13
>2xxz_A Lysine-specific demethylase 6B; oxidoreductase, histone demethylation, oxygenase, chromatin modification; HET: 8XQ; 1.80A {Homo sapiens}
Probab=97.13 E-value=0.00045 Score=75.86 Aligned_cols=87 Identities=18% Similarity=0.300 Sum_probs=71.5
Q ss_pred CCceEEEeecCCChhHHHHHHHHHHHhhccccCCCCCcccCCcccCccccCHHHHHHHHHHhCccceEEEeecCceeEec
Q 002330 776 SGGALWDIFRRQDVPKLEAYLRKHFKEFRHVYCSPVEQVIHPIHDQCFYLSSEHKKKLKEEFGVEPWTFEQKLGEAVFIP 855 (935)
Q Consensus 776 ~~GAlWDIFRreDvpKLreyL~kh~~Ef~h~~~~pv~~v~dPIHDQ~fYLt~ehk~rLkEEyGVepWtf~Q~lGEAVFIP 855 (935)
.+--+|=.-..+...+++++++++. .| +|.+.++++.+- |+ +.||.=+.|+|++||.|+|+
T Consensus 232 p~~~~Wy~VP~e~~~~~e~l~~k~~--------------~d-~~~~~~~~~p~~---L~-~~gIPvyr~~QkpGd~Vi~~ 292 (332)
T 2xxz_A 232 PGDCEWFAVHEHYWETISAFCDRHG--------------VD-YLTGSWWPILDD---LY-ASNIPVYRFVQRPGDLVWIN 292 (332)
T ss_dssp ESCEEEEEECGGGHHHHHHHHHHTT--------------CC-TTTSCBCCCHHH---HH-HTTCCCEEEEECTTCEEEEC
T ss_pred CCceEEEEECHHHHHHHHHHHHhcC--------------Cc-hhhceecCCHHH---HH-hCCCCeEEEEECCCCEEEEC
Confidence 3456899999999999999998632 12 234567776643 33 35999999999999999999
Q ss_pred CCCccccccccccceecccccCccch
Q 002330 856 AGCPHQVRNLKSCTKVAVDFVSPENV 881 (935)
Q Consensus 856 AGCPHQVRNLkSCIKVAlDFVSPEnV 881 (935)
+||-|||.|.=-|+++|..|..|...
T Consensus 293 PgayH~v~n~G~~~n~awN~a~~~~~ 318 (332)
T 2xxz_A 293 AGTVHWVQATGWCNNIAWNVGPLTAY 318 (332)
T ss_dssp TTCEEEEEESSSEEEEEEEEESCTTG
T ss_pred CCceEEEEecceeeEEEEEeCCCcHH
Confidence 99999999999999999999999765
No 14
>3avr_A Lysine-specific demethylase 6A; cupin superfamily, TRI/dimethyllysine demethylase, oxidoredu structural protein complex; HET: M3L OGA EDO; 1.80A {Homo sapiens} PDB: 3avs_A*
Probab=97.03 E-value=0.00061 Score=78.82 Aligned_cols=89 Identities=21% Similarity=0.293 Sum_probs=73.5
Q ss_pred CCceEEEeecCCChhHHHHHHHHHHHhhccccCCCCCcccCCcccCccccCHHHHHHHHHHhCccceEEEeecCceeEec
Q 002330 776 SGGALWDIFRRQDVPKLEAYLRKHFKEFRHVYCSPVEQVIHPIHDQCFYLSSEHKKKLKEEFGVEPWTFEQKLGEAVFIP 855 (935)
Q Consensus 776 ~~GAlWDIFRreDvpKLreyL~kh~~Ef~h~~~~pv~~v~dPIHDQ~fYLt~ehk~rLkEEyGVepWtf~Q~lGEAVFIP 855 (935)
.+-.+|=.-..++..|++++++++. .|. +...++++.+. |+ +.||.-+.|+|++||.|+++
T Consensus 291 gg~~~Wy~VP~e~~~k~e~l~~k~~--------------~~~-~~~~~~~~p~~---L~-~~gIPvyr~vQkpGd~Vi~~ 351 (531)
T 3avr_A 291 PGDCEWFVVPEGYWGVLNDFCEKNN--------------LNF-LMGSWWPNLED---LY-EANVPVYRFIQRPGDLVWIN 351 (531)
T ss_dssp ESCEEEEEECGGGHHHHHHHHHHTT--------------CCT-TTSCBCCCHHH---HH-HTTCCCEEEEECTTCEEEEC
T ss_pred CCCeEEEEeCHHHHHHHHHHHHHcC--------------CCh-hhceeecCHHH---HH-hCCCCeEEEEECCCCEEEEC
Confidence 3456899999999999999998651 233 34567777553 33 35999999999999999999
Q ss_pred CCCccccccccccceecccccCccchHH
Q 002330 856 AGCPHQVRNLKSCTKVAVDFVSPENVDE 883 (935)
Q Consensus 856 AGCPHQVRNLkSCIKVAlDFVSPEnV~e 883 (935)
+||.|||.|+=-|+++|..|..|.-+.-
T Consensus 352 PgayH~v~n~G~~~n~awN~a~~~~~q~ 379 (531)
T 3avr_A 352 AGTVHWVQAIGWCNNIAWNVGPLTACQY 379 (531)
T ss_dssp TTCEEEEEESSSEEEEEEEECCSSHHHH
T ss_pred CCceEEEEecceeeeeEEEeccCchHHH
Confidence 9999999999999999999999996653
No 15
>4ask_A Lysine-specific demethylase 6B; oxidoreductase, KDM6B, GSK-J1, inhibitor, lysine specific HI demethylase; HET: K0I; 1.86A {Homo sapiens} PDB: 2xue_A* 4eyu_A* 4ez4_A* 4ezh_A*
Probab=96.42 E-value=0.0029 Score=72.64 Aligned_cols=88 Identities=18% Similarity=0.272 Sum_probs=71.6
Q ss_pred CCceEEEeecCCChhHHHHHHHHHHHhhccccCCCCCcccCCcccCccccCHHHHHHHHHHhCccceEEEeecCceeEec
Q 002330 776 SGGALWDIFRRQDVPKLEAYLRKHFKEFRHVYCSPVEQVIHPIHDQCFYLSSEHKKKLKEEFGVEPWTFEQKLGEAVFIP 855 (935)
Q Consensus 776 ~~GAlWDIFRreDvpKLreyL~kh~~Ef~h~~~~pv~~v~dPIHDQ~fYLt~ehk~rLkEEyGVepWtf~Q~lGEAVFIP 855 (935)
.+--+|=.=..+...+++++++++.. |. +.+.++.+.+. |+ +.||.=+.|+|++||.|+++
T Consensus 266 gg~c~WY~VP~e~~~k~e~l~~k~~~--------------d~-l~~~~~pspe~---L~-kagIPvyr~iQkPGdfVit~ 326 (510)
T 4ask_A 266 PGDCEWFAVHEHYWETISAFCDRHGV--------------DY-LTGSWWPILDD---LY-ASNIPVYRFVQRPGDLVWIN 326 (510)
T ss_dssp ESCEEEEEECGGGHHHHHHHHHHTTC--------------CT-TTSCBCCCHHH---HH-HTTCCCEEEEECTTCEEEEC
T ss_pred CCceeEEEECHHHHHHHHHHHHHhCc--------------ch-hhccccCCHHH---HH-hCCCCeEEEEECCCCEEEEC
Confidence 34569999999999999999986421 22 33667776653 33 47999999999999999999
Q ss_pred CCCccccccccccceecccccCccchH
Q 002330 856 AGCPHQVRNLKSCTKVAVDFVSPENVD 882 (935)
Q Consensus 856 AGCPHQVRNLkSCIKVAlDFVSPEnV~ 882 (935)
+|+.|+|.|.==|+++|-.|.-|-...
T Consensus 327 PgtyH~Vqs~Gf~~niaWNvap~t~~q 353 (510)
T 4ask_A 327 AGTVHWVQATGWCNNIAWNVGPLTAYQ 353 (510)
T ss_dssp TTCEEEEEESSSEEEEEEEECBSSHHH
T ss_pred CCceEEEEecCeeeeeEEEecCCCHHH
Confidence 999999999999999999998885443
No 16
>3dxt_A JMJC domain-containing histone demethylation PROT; JMJD2D, histone demethylase, H3K9, jumonji domain-CONT protein 2D, oxidoreductase; 1.80A {Homo sapiens} PDB: 3dxu_A* 4hon_A* 4hoo_A 2w2i_A*
Probab=95.91 E-value=0.0087 Score=66.26 Aligned_cols=94 Identities=21% Similarity=0.215 Sum_probs=78.9
Q ss_pred eEEEeecCCChhHHHHHHHHHHHhhccccCCCCCcccCCcccCccccCHHHHHHHHHHhCccceEEEeecCceeEecCCC
Q 002330 779 ALWDIFRRQDVPKLEAYLRKHFKEFRHVYCSPVEQVIHPIHDQCFYLSSEHKKKLKEEFGVEPWTFEQKLGEAVFIPAGC 858 (935)
Q Consensus 779 AlWDIFRreDvpKLreyL~kh~~Ef~h~~~~pv~~v~dPIHDQ~fYLt~ehk~rLkEEyGVepWtf~Q~lGEAVFIPAGC 858 (935)
-+|=.-..++..|+++++++.+.+.- ..|. +=+|.+.+.++++. |+ +.||.-.+++|++||.|++-.|+
T Consensus 210 K~WY~VP~~~~~kfE~l~k~~~p~~~-~~c~------~fL~h~~~lisP~~---L~-~~GIpv~~~vQ~pGEfViTfP~a 278 (354)
T 3dxt_A 210 KTWYVVPPEHGQRLERLARELFPGSS-RGCG------AFLRHKVALISPTV---LK-ENGIPFNRITQEAGEFMVTFPYG 278 (354)
T ss_dssp EEEEEECGGGHHHHHHHHHHHSHHHH-HHCT------TGGGGCCEEECHHH---HH-HTTCCCEEEEECTTCEEEECTTC
T ss_pred eEEEEeCHHHHHHHHHHHHHhCchhh-hhcH------HHHhcCcccCCHHH---HH-HCCCceEEEEeCCCcEEEECCCc
Confidence 49999999999999999998865421 1232 22566788899873 44 47999999999999999999999
Q ss_pred ccccccccccceecccccCccchHH
Q 002330 859 PHQVRNLKSCTKVAVDFVSPENVDE 883 (935)
Q Consensus 859 PHQVRNLkSCIKVAlDFVSPEnV~e 883 (935)
=|.|.|+--++..|..|..|.=+..
T Consensus 279 YH~gfn~Gfn~aEAvNFA~~~Wl~~ 303 (354)
T 3dxt_A 279 YHAGFNHGFNCAEAINFATPRWIDY 303 (354)
T ss_dssp EEEEEESSSEEEEEEEECCGGGHHH
T ss_pred eEEEeeccccHhHhhccCcHHHHHh
Confidence 9999999999999999999997764
No 17
>3opt_A DNA damage-responsive transcriptional repressor R; RPH1, histone demethylase, catalytic core, oxidoreductase; HET: DNA AKG; 2.20A {Saccharomyces cerevisiae} PDB: 3opw_A*
Probab=94.94 E-value=0.032 Score=62.17 Aligned_cols=93 Identities=19% Similarity=0.213 Sum_probs=74.8
Q ss_pred eEEEeecCCChhHHHHHHHHHHHhhccccCCCCCcccCCcccCccccCHHHHHHHHHHhCccceEEEeecCceeEecCCC
Q 002330 779 ALWDIFRRQDVPKLEAYLRKHFKEFRHVYCSPVEQVIHPIHDQCFYLSSEHKKKLKEEFGVEPWTFEQKLGEAVFIPAGC 858 (935)
Q Consensus 779 AlWDIFRreDvpKLreyL~kh~~Ef~h~~~~pv~~v~dPIHDQ~fYLt~ehk~rLkEEyGVepWtf~Q~lGEAVFIPAGC 858 (935)
-+|=.-..++..|+++++++++.+.- ..|. +=+|...+.+++. .|+ +.||.-.+++|++||.|++=.|+
T Consensus 253 K~WY~VP~~~~~kfE~l~k~~~p~~~-~~c~------~fL~h~~~lisP~---~L~-~~GIpv~r~vQ~pGEfViTfP~a 321 (373)
T 3opt_A 253 KQWYSIPQEDRFKFYKFMQEQFPEEA-KNCP------EFLRHKMFLASPK---LLQ-ENGIRCNEIVHHEGEFMITYPYG 321 (373)
T ss_dssp EEEEECCGGGHHHHHHHHHHSSHHHH-SSCS------SCTTTSCEEECHH---HHH-TTTCCCEEEEECTTCEEEECTTC
T ss_pred eEEEEeCHHHHHHHHHHHHHhChhhh-hhCH------HHhhCCcccCCHH---HHH-hcCCceEEEEECCCCEEEECCCc
Confidence 48999999999999999998876421 1232 2356677888885 344 57999999999999999999999
Q ss_pred ccccccccccceecccccCccchH
Q 002330 859 PHQVRNLKSCTKVAVDFVSPENVD 882 (935)
Q Consensus 859 PHQVRNLkSCIKVAlDFVSPEnV~ 882 (935)
=|.|.|+--|+..|..|..|+=+.
T Consensus 322 YH~gfn~Gfn~aEAvNFA~~~Wl~ 345 (373)
T 3opt_A 322 YHAGFNYGYNLAESVNFALEEWLP 345 (373)
T ss_dssp CEEEEESSSEEEEEEEECCC----
T ss_pred eEEEEecCccHHHHHccCcHHHHH
Confidence 999999999999999999987654
No 18
>2ox0_A JMJC domain-containing histone demethylation PROT; double-stranded beta helix, demethylase, oxygenase, SGC, STR genomics, structural genomics consortium, oxidoreductase; HET: MLY ALY OGA; 1.95A {Homo sapiens} PDB: 2oq7_A* 2os2_A* 2ot7_A* 2oq6_A* 2vd7_A* 2ybk_A* 2ybp_A* 2ybs_A* 3njy_A* 3pdq_A* 3u4s_A* 2p5b_A* 2q8c_A* 2q8d_A* 2q8e_A* 2gp5_A* 2gp3_A* 2wwj_A* 2pxj_A* 2xml_A*
Probab=94.59 E-value=0.05 Score=60.82 Aligned_cols=95 Identities=16% Similarity=0.148 Sum_probs=78.7
Q ss_pred ceEEEeecCCChhHHHHHHHHHHHhhccccCCCCCcccCCcccCccccCHHHHHHHHHHhCccceEEEeecCceeEecCC
Q 002330 778 GALWDIFRRQDVPKLEAYLRKHFKEFRHVYCSPVEQVIHPIHDQCFYLSSEHKKKLKEEFGVEPWTFEQKLGEAVFIPAG 857 (935)
Q Consensus 778 GAlWDIFRreDvpKLreyL~kh~~Ef~h~~~~pv~~v~dPIHDQ~fYLt~ehk~rLkEEyGVepWtf~Q~lGEAVFIPAG 857 (935)
--+|=.-.+++..|+++++++++.+.-. .|. +=+|...+.++++. |+ +.||.-.+++|++||.|++=.|
T Consensus 227 pK~WY~VP~~~~~kfE~l~~~~~P~~~~-~~~------~~L~h~~~~isP~~---L~-~~GIpv~r~vQ~pGEfViTfP~ 295 (381)
T 2ox0_A 227 PKSWYSVPPEHGKRLERLAKGFFPGSAQ-SCE------AFLRHKMTLISPLM---LK-KYGIPFDKVTQEAGEFMITFPY 295 (381)
T ss_dssp CEEEEEECGGGHHHHHHHHHHHSHHHHH-HCT------TGGGGSCEEECHHH---HH-HTTCCCEEEEECTTCEEEECTT
T ss_pred ceEEEecCHHHHHHHHHHHHHhChhhhh-cch------HHhhccccccCHHH---HH-HCCCceEEEEecCCCEEEECCC
Confidence 3589999999999999999998764211 232 33566788888853 33 5799999999999999999999
Q ss_pred CccccccccccceecccccCccchHH
Q 002330 858 CPHQVRNLKSCTKVAVDFVSPENVDE 883 (935)
Q Consensus 858 CPHQVRNLkSCIKVAlDFVSPEnV~e 883 (935)
+=|.|.|+=-++..|..|..|+=+..
T Consensus 296 aYH~gfn~GfN~aEAvNFA~~~Wl~~ 321 (381)
T 2ox0_A 296 GYHAGFNHGFNCAESTNFATRRWIEY 321 (381)
T ss_dssp CEEEEEECSSEEEEEEEECCTTHHHH
T ss_pred cEEEeecCcccHHHHhccCcHHHHHH
Confidence 99999999999999999999886654
No 19
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=92.54 E-value=0.2 Score=41.76 Aligned_cols=48 Identities=27% Similarity=0.614 Sum_probs=34.8
Q ss_pred CCCcccccccCCCCceEecCcCCCCcccHhHHhhhCCCCChhhhhccCCCCCCc
Q 002330 200 ERIKCHQCMKSERKYVVPCGKCRTKVYCIQCIKQWYPKMSELDVAEICPFCRRN 253 (935)
Q Consensus 200 ~~~~CHQCrqk~~~~~v~C~~C~r~~FC~~CL~~rY~e~~~edv~w~CP~CRgi 253 (935)
....|--|...-...++. .|+ ..||..||..|.... .....||.||..
T Consensus 19 ~~~~C~IC~~~~~~~~~~--~Cg-H~fC~~Ci~~~~~~~---~~~~~CP~Cr~~ 66 (73)
T 2ysl_A 19 EEVICPICLDILQKPVTI--DCG-HNFCLKCITQIGETS---CGFFKCPLCKTS 66 (73)
T ss_dssp CCCBCTTTCSBCSSEEEC--TTC-CEEEHHHHHHHCSSS---CSCCCCSSSCCC
T ss_pred cCCEeccCCcccCCeEEc--CCC-ChhhHHHHHHHHHcC---CCCCCCCCCCCc
Confidence 356788888765543333 799 899999999998521 234589999874
No 20
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=91.05 E-value=0.13 Score=43.57 Aligned_cols=52 Identities=27% Similarity=0.643 Sum_probs=36.2
Q ss_pred CCCcccccccCCCCceEecCcCCCCcccHhHHhhhCCCCChhhhhccCCCCCCcc
Q 002330 200 ERIKCHQCMKSERKYVVPCGKCRTKVYCIQCIKQWYPKMSELDVAEICPFCRRNC 254 (935)
Q Consensus 200 ~~~~CHQCrqk~~~~~v~C~~C~r~~FC~~CL~~rY~e~~~edv~w~CP~CRgiC 254 (935)
....|.-|...-...++ ..|+ ..||..||..|+...........||.||...
T Consensus 18 ~~~~C~IC~~~~~~p~~--~~Cg-H~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~ 69 (85)
T 2ecw_A 18 EEVTCPICLELLKEPVS--ADCN-HSFCRACITLNYESNRNTDGKGNCPVCRVPY 69 (85)
T ss_dssp TTTSCTTTCSCCSSCEE--CTTS-CCBCHHHHHHHHHHSBCTTSCBCCTTTCCCC
T ss_pred cCCCCcCCChhhCccee--CCCC-CHHHHHHHHHHHHhccCCCCCCCCCCCCCcC
Confidence 35679999876554442 3599 8999999999985322122367899998753
No 21
>2opk_A Hypothetical protein; putative mannose-6-phosphate isomerase, structural genomics, center for structural genomics, JCSG; 2.10A {Ralstonia eutropha}
Probab=90.91 E-value=0.069 Score=48.79 Aligned_cols=24 Identities=25% Similarity=0.422 Sum_probs=20.5
Q ss_pred EEeecCceeEecCCCccccccccc
Q 002330 844 FEQKLGEAVFIPAGCPHQVRNLKS 867 (935)
Q Consensus 844 f~Q~lGEAVFIPAGCPHQVRNLkS 867 (935)
+.=..||.|+||||+||+++|.-.
T Consensus 75 ~~l~~Gd~i~ipa~~~H~~~n~~~ 98 (112)
T 2opk_A 75 RVMRPGDWLHVPAHCRHRVAWTDG 98 (112)
T ss_dssp EEECTTEEEEECTTCCEEEEEECS
T ss_pred EEECCCCEEEECCCCcEEEEeCCC
Confidence 444679999999999999999864
No 22
>1yhf_A Hypothetical protein SPY1581; structural genomics, conserved hypothetical protein, PSI, PR structure initiative; 2.00A {Streptococcus pyogenes} SCOP: b.82.1.9
Probab=90.61 E-value=0.12 Score=46.08 Aligned_cols=58 Identities=26% Similarity=0.448 Sum_probs=39.0
Q ss_pred cCCcccCccccCHHHHHHHHHHhCccceEEEeecCceeEecCCCccccccccccceecccccCcc
Q 002330 815 IHPIHDQCFYLSSEHKKKLKEEFGVEPWTFEQKLGEAVFIPAGCPHQVRNLKSCTKVAVDFVSPE 879 (935)
Q Consensus 815 ~dPIHDQ~fYLt~ehk~rLkEEyGVepWtf~Q~lGEAVFIPAGCPHQVRNLkSCIKVAlDFVSPE 879 (935)
.|+ +++-+|+....- ++.+..=++.=..||+++||+|.||+++|...|.-+.+ ++.||
T Consensus 57 ~H~-~~e~~~vl~G~~-----~~~~~~~~~~l~~Gd~~~ip~~~~H~~~~~~~~~~~~v-~~~~~ 114 (115)
T 1yhf_A 57 SSP-GDAMVTILSGLA-----EITIDQETYRVAEGQTIVMPAGIPHALYAVEAFQMLLV-VVKPE 114 (115)
T ss_dssp CCS-SEEEEEEEESEE-----EEEETTEEEEEETTCEEEECTTSCEEEEESSCEEEEEE-EECSC
T ss_pred ECC-CcEEEEEEeCEE-----EEEECCEEEEECCCCEEEECCCCCEEEEECCCceEEEE-EEccC
Confidence 455 556666654432 13345556777899999999999999999886544433 44444
No 23
>2pfw_A Cupin 2, conserved barrel domain protein; cupin domain, struc genomics, joint center for structural genomics, JCSG; 1.90A {Shewanella frigidimarina}
Probab=90.28 E-value=0.095 Score=46.75 Aligned_cols=58 Identities=21% Similarity=0.264 Sum_probs=39.5
Q ss_pred ccCCcccCccccCHHHHHHHHHHhCccceEEEeecCceeEecCCCccccccccccceecccccCcc
Q 002330 814 VIHPIHDQCFYLSSEHKKKLKEEFGVEPWTFEQKLGEAVFIPAGCPHQVRNLKSCTKVAVDFVSPE 879 (935)
Q Consensus 814 v~dPIHDQ~fYLt~ehk~rLkEEyGVepWtf~Q~lGEAVFIPAGCPHQVRNLkSCIKVAlDFVSPE 879 (935)
..|| .+|-+|+-.-.- ++-|..=++.=..||+++||+|.||+++|...|. .+.+.+|.
T Consensus 50 H~H~-~~e~~~vl~G~~-----~~~~~~~~~~l~~Gd~~~ip~~~~H~~~~~~~~~--~l~v~~p~ 107 (116)
T 2pfw_A 50 HAHR-HSQVSYVVEGEF-----HVNVDGVIKVLTAGDSFFVPPHVDHGAVCPTGGI--LIDTFSPA 107 (116)
T ss_dssp ECCS-SEEEEEEEEECE-----EEEETTEEEEECTTCEEEECTTCCEEEEESSCEE--EEEEEESC
T ss_pred EECC-cceEEEEEeeEE-----EEEECCEEEEeCCCCEEEECcCCceeeEeCCCcE--EEEEECCc
Confidence 4566 666666644322 2334444677789999999999999999998763 34445553
No 24
>3ht1_A REMF protein; cupin fold, Zn-binding, antibiotic biosynthesis, resistomycin, metalloprotein, cyclase, lyase; 1.20A {Streptomyces resistomycificus} PDB: 3ht2_A
Probab=90.07 E-value=0.16 Score=46.81 Aligned_cols=41 Identities=32% Similarity=0.244 Sum_probs=31.3
Q ss_pred ccceEEEeecCceeEecCCCccccccccccceecccccCcc
Q 002330 839 VEPWTFEQKLGEAVFIPAGCPHQVRNLKSCTKVAVDFVSPE 879 (935)
Q Consensus 839 VepWtf~Q~lGEAVFIPAGCPHQVRNLkSCIKVAlDFVSPE 879 (935)
|..=++.=..||+|+||+|.||+++|...---+.+-+++|.
T Consensus 76 ~~~~~~~l~~Gd~~~ip~~~~H~~~~~~~~~~~~l~i~~~~ 116 (145)
T 3ht1_A 76 DQGRTEEVGPGEAIFIPRGEPHGFVTGPGQTCRFLVVAPCE 116 (145)
T ss_dssp GGTEEEEECTTCEEEECTTCCBEEECCTTCCEEEEEEEESC
T ss_pred ECCEEEEECCCCEEEECCCCeEEeEcCCCCCEEEEEEECCC
Confidence 44556777899999999999999999876544555555555
No 25
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=89.81 E-value=0.41 Score=45.32 Aligned_cols=44 Identities=27% Similarity=0.811 Sum_probs=33.0
Q ss_pred CCcccccccCCCCceEecCcCCCCcccHhHHhhhCCCCChhhhhccCCCCCCc
Q 002330 201 RIKCHQCMKSERKYVVPCGKCRTKVYCIQCIKQWYPKMSELDVAEICPFCRRN 253 (935)
Q Consensus 201 ~~~CHQCrqk~~~~~v~C~~C~r~~FC~~CL~~rY~e~~~edv~w~CP~CRgi 253 (935)
..+|--|...-...++ ..|+ ..||..||..|... ...||.||..
T Consensus 53 ~~~C~iC~~~~~~~~~--~~Cg-H~fc~~Ci~~~~~~------~~~CP~Cr~~ 96 (138)
T 4ayc_A 53 ELQCIICSEYFIEAVT--LNCA-HSFCSYCINEWMKR------KIECPICRKD 96 (138)
T ss_dssp HSBCTTTCSBCSSEEE--ETTS-CEEEHHHHHHHTTT------CSBCTTTCCB
T ss_pred cCCCcccCcccCCceE--CCCC-CCccHHHHHHHHHc------CCcCCCCCCc
Confidence 3579999876554443 3699 89999999999854 2479999874
No 26
>3fjs_A Uncharacterized protein with RMLC-like cupin fold; structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.90A {Ralstonia eutropha JMP134}
Probab=89.78 E-value=0.13 Score=46.92 Aligned_cols=42 Identities=21% Similarity=0.402 Sum_probs=31.2
Q ss_pred hCccceEEEeecCceeEecCCCccccccccccceecccccCcc
Q 002330 837 FGVEPWTFEQKLGEAVFIPAGCPHQVRNLKSCTKVAVDFVSPE 879 (935)
Q Consensus 837 yGVepWtf~Q~lGEAVFIPAGCPHQVRNLkSCIKVAlDFVSPE 879 (935)
+-|..=++.=..||+|+||+|.||+++|...+. +.+-+|.|.
T Consensus 69 ~~i~~~~~~l~~Gd~i~ip~~~~H~~~~~~~~~-~~~~~v~p~ 110 (114)
T 3fjs_A 69 IGVDGAQRRLHQGDLLYLGAGAAHDVNAITNTS-LLVTVVLVD 110 (114)
T ss_dssp EEETTEEEEECTTEEEEECTTCCEEEEESSSEE-EEEEEECC-
T ss_pred EEECCEEEEECCCCEEEECCCCcEEEEeCCCcE-EEEEEEeCC
Confidence 445555777889999999999999999997653 344555554
No 27
>3lag_A Uncharacterized protein RPA4178; functionally unknown protein, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.15A {Rhodopseudomonas palustris}
Probab=89.74 E-value=0.11 Score=46.78 Aligned_cols=24 Identities=33% Similarity=0.387 Sum_probs=20.7
Q ss_pred EEeecCceeEecCCCccccccccc
Q 002330 844 FEQKLGEAVFIPAGCPHQVRNLKS 867 (935)
Q Consensus 844 f~Q~lGEAVFIPAGCPHQVRNLkS 867 (935)
+.-..||++|||+|.+|++.|.-+
T Consensus 61 ~~l~~G~~~~ip~G~~H~~~N~g~ 84 (98)
T 3lag_A 61 AQLKTGRSYARKAGVQHDVRNEST 84 (98)
T ss_dssp CCBCTTCCEEECTTCEEEEBCCSS
T ss_pred EEecCCcEEEEcCCCcEECEECCC
Confidence 445789999999999999999754
No 28
>2b8m_A Hypothetical protein MJ0764; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 1.70A {Methanocaldococcus jannaschii} SCOP: b.82.1.18
Probab=89.66 E-value=0.18 Score=45.37 Aligned_cols=36 Identities=22% Similarity=0.345 Sum_probs=26.7
Q ss_pred EeecCceeEecCCCcccccccccc--ceecccccCccc
Q 002330 845 EQKLGEAVFIPAGCPHQVRNLKSC--TKVAVDFVSPEN 880 (935)
Q Consensus 845 ~Q~lGEAVFIPAGCPHQVRNLkSC--IKVAlDFVSPEn 880 (935)
.=..||++|||+|.||+++|..+. .-+.+.|-+|+.
T Consensus 69 ~l~~Gd~i~ip~~~~H~~~~~~~~~~~~l~i~~~~~~~ 106 (117)
T 2b8m_A 69 NYKEGNIVYVPFNVKMLIQNINSDILEFFVVKAPHPKK 106 (117)
T ss_dssp EEETTCEEEECTTCEEEEECCSSSEEEEEEEECSCGGG
T ss_pred EeCCCCEEEECCCCcEEeEcCCCCCEEEEEEECCCCCC
Confidence 557899999999999999998653 344444444543
No 29
>2q30_A Uncharacterized protein; double-stranded beta-helix fold, structural genomics, joint for structural genomics, JCSG; HET: MSE; 1.94A {Desulfovibrio desulfuricans subsp}
Probab=89.49 E-value=0.11 Score=45.67 Aligned_cols=36 Identities=19% Similarity=0.356 Sum_probs=28.2
Q ss_pred ceEEEeecCceeEecCCCccccccccccceecccccCc
Q 002330 841 PWTFEQKLGEAVFIPAGCPHQVRNLKSCTKVAVDFVSP 878 (935)
Q Consensus 841 pWtf~Q~lGEAVFIPAGCPHQVRNLkSCIKVAlDFVSP 878 (935)
.=++.=..||+++||||.||+++|...+. .+..++|
T Consensus 73 ~~~~~l~~Gd~~~ip~~~~H~~~~~~~~~--~l~~~~p 108 (110)
T 2q30_A 73 DAVIPAPRGAVLVAPISTPHGVRAVTDMK--VLVTIAP 108 (110)
T ss_dssp GCEEEECTTEEEEEETTSCEEEEESSSEE--EEEEEES
T ss_pred CEEEEECCCCEEEeCCCCcEEEEEcCCcE--EEEEECC
Confidence 35677789999999999999999998753 3445555
No 30
>3h8u_A Uncharacterized conserved protein with double-STR beta-helix domain; YP_001338853.1; HET: 2PE; 1.80A {Klebsiella pneumoniae subsp}
Probab=89.48 E-value=0.16 Score=46.01 Aligned_cols=38 Identities=21% Similarity=0.195 Sum_probs=29.2
Q ss_pred eEEEeecCceeEecCCCccccccccccceecccccCcc
Q 002330 842 WTFEQKLGEAVFIPAGCPHQVRNLKSCTKVAVDFVSPE 879 (935)
Q Consensus 842 Wtf~Q~lGEAVFIPAGCPHQVRNLkSCIKVAlDFVSPE 879 (935)
=++.=..||+|+||+|.||+++|..+---+.+.+++|-
T Consensus 79 ~~~~l~~Gd~~~i~~~~~H~~~n~~~~~~~~l~v~~p~ 116 (125)
T 3h8u_A 79 IVTHLKAGDIAIAKPGQVHGAMNSGPEPFIFVSVVAPG 116 (125)
T ss_dssp CEEEEETTEEEEECTTCCCEEEECSSSCEEEEEEEEST
T ss_pred eEEEeCCCCEEEECCCCEEEeEeCCCCCEEEEEEECCC
Confidence 35556789999999999999999876544555566663
No 31
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=89.40 E-value=0.36 Score=40.40 Aligned_cols=45 Identities=24% Similarity=0.586 Sum_probs=33.1
Q ss_pred CCCcccccccCCCCceEecCcCCCCcccHhHHhhhCCCCChhhhhccCCCCCCc
Q 002330 200 ERIKCHQCMKSERKYVVPCGKCRTKVYCIQCIKQWYPKMSELDVAEICPFCRRN 253 (935)
Q Consensus 200 ~~~~CHQCrqk~~~~~v~C~~C~r~~FC~~CL~~rY~e~~~edv~w~CP~CRgi 253 (935)
....|--|...-...++. .|+ ..||..||..|+... ..||.||..
T Consensus 14 ~~~~C~IC~~~~~~~~~~--~Cg-H~fC~~Ci~~~~~~~------~~CP~Cr~~ 58 (71)
T 2d8t_A 14 TVPECAICLQTCVHPVSL--PCK-HVFCYLCVKGASWLG------KRCALCRQE 58 (71)
T ss_dssp SCCBCSSSSSBCSSEEEE--TTT-EEEEHHHHHHCTTCS------SBCSSSCCB
T ss_pred CCCCCccCCcccCCCEEc--cCC-CHHHHHHHHHHHHCC------CcCcCcCch
Confidence 356788888665443332 698 889999999998542 589999874
No 32
>1vrb_A Putative asparaginyl hydroxylase; 2636534, structural genomi center for structural genomics, JCSG, protein structure INI PSI, oxidoreductase; 2.60A {Bacillus subtilis} SCOP: b.82.2.11
Probab=89.38 E-value=0.17 Score=55.33 Aligned_cols=36 Identities=11% Similarity=0.222 Sum_probs=32.7
Q ss_pred ccceEEEeecCceeEecCCCccccccc--cccceeccc
Q 002330 839 VEPWTFEQKLGEAVFIPAGCPHQVRNL--KSCTKVAVD 874 (935)
Q Consensus 839 VepWtf~Q~lGEAVFIPAGCPHQVRNL--kSCIKVAlD 874 (935)
..++.++-.+||+.|||+|.+|||+++ ..|+.|.+-
T Consensus 215 ~~~~~~~L~pGD~LyiP~gwwH~v~s~~~~~slsvsi~ 252 (342)
T 1vrb_A 215 PDAEIVNLTPGTMLYLPRGLWHSTKSDQATLALNITFG 252 (342)
T ss_dssp CSSEEEEECTTCEEEECTTCEEEEECSSCEEEEEEEEC
T ss_pred CCceEEEECCCcEEEeCCCccEEEEECCCCceEEEEEC
Confidence 567999999999999999999999999 468888877
No 33
>2fc7_A ZZZ3 protein; structure genomics, ZZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.6
Probab=89.35 E-value=0.19 Score=44.88 Aligned_cols=37 Identities=22% Similarity=0.690 Sum_probs=31.3
Q ss_pred CCcccccCccc-cccccccccCcCC----cccchhchHHhhc
Q 002330 328 DERVYCNHCAT-SIIDLHRSCPKCS----YELCLTCCKEICE 364 (935)
Q Consensus 328 DERvyCDnCkT-SI~D~HRSC~~Cs----yDLCL~CC~ELR~ 364 (935)
-..+.||.|.. +|+-.-..|..|. ||||..|....+.
T Consensus 19 H~~~~Cd~C~~~pI~G~RykC~~C~d~~~yDLC~~C~~~g~~ 60 (82)
T 2fc7_A 19 HVGFKCDNCGIEPIQGVRWHCQDCPPEMSLDFCDSCSDCLHE 60 (82)
T ss_dssp ESSCCCSSSCCSSEESCEEEESSSCSSSCCEEEGGGTTCCCC
T ss_pred eCcCCCCCCCCCcceeceEECCcCCCCcceecHHHHHhCccc
Confidence 34678999996 8999999999996 9999999986553
No 34
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=89.08 E-value=0.17 Score=45.55 Aligned_cols=49 Identities=33% Similarity=0.874 Sum_probs=38.0
Q ss_pred cCCCcccccccCCCCceEecCcCCCCcccHhHHhhhCCCCChhhhhccCCCCCCcc
Q 002330 199 LERIKCHQCMKSERKYVVPCGKCRTKVYCIQCIKQWYPKMSELDVAEICPFCRRNC 254 (935)
Q Consensus 199 ~~~~~CHQCrqk~~~~~v~C~~C~r~~FC~~CL~~rY~e~~~edv~w~CP~CRgiC 254 (935)
.....|.-|...-. ..+.|..|+ ..||..||..|+... ...||.||..-
T Consensus 20 ~~~~~C~IC~~~~~-~p~~~~~Cg-H~FC~~Ci~~~~~~~-----~~~CP~Cr~~~ 68 (100)
T 3lrq_A 20 AEVFRCFICMEKLR-DARLCPHCS-KLCCFSCIRRWLTEQ-----RAQCPHCRAPL 68 (100)
T ss_dssp HHHTBCTTTCSBCS-SEEECTTTC-CEEEHHHHHHHHHHT-----CSBCTTTCCBC
T ss_pred CCCCCCccCCcccc-CccccCCCC-ChhhHHHHHHHHHHC-----cCCCCCCCCcC
Confidence 45678999987654 466778999 999999999998532 16899999854
No 35
>1v70_A Probable antibiotics synthesis protein; structural genomics, thermus thermophilus HB8, riken structu genomics/proteomics initiative, RSGI; 1.30A {Thermus thermophilus} SCOP: b.82.1.9 PDB: 2dct_A
Probab=89.05 E-value=0.17 Score=43.37 Aligned_cols=37 Identities=32% Similarity=0.430 Sum_probs=26.5
Q ss_pred eEEEeecCceeEecCCCccccccccccceecccccCc
Q 002330 842 WTFEQKLGEAVFIPAGCPHQVRNLKSCTKVAVDFVSP 878 (935)
Q Consensus 842 Wtf~Q~lGEAVFIPAGCPHQVRNLkSCIKVAlDFVSP 878 (935)
=++.=..||+++||+|.||+++|...---+.+-+++|
T Consensus 67 ~~~~l~~Gd~~~ip~~~~H~~~~~~~~~~~~~~v~~p 103 (105)
T 1v70_A 67 EEALLAPGMAAFAPAGAPHGVRNESASPALLLVVTAP 103 (105)
T ss_dssp EEEEECTTCEEEECTTSCEEEECCSSSCEEEEEEEES
T ss_pred EEEEeCCCCEEEECCCCcEEeEeCCCCCEEEEEEeCC
Confidence 3566679999999999999999986432233344444
No 36
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=88.85 E-value=0.25 Score=42.31 Aligned_cols=47 Identities=23% Similarity=0.625 Sum_probs=35.3
Q ss_pred CCCcccccccCCCCceEecCcCCCCcccHhHHhhhCCCCChhhhhccCCCCCCccc
Q 002330 200 ERIKCHQCMKSERKYVVPCGKCRTKVYCIQCIKQWYPKMSELDVAEICPFCRRNCN 255 (935)
Q Consensus 200 ~~~~CHQCrqk~~~~~v~C~~C~r~~FC~~CL~~rY~e~~~edv~w~CP~CRgiCN 255 (935)
....|--|...-...++ ..|+ ..||..||..|+.. ...||.||..-+
T Consensus 14 ~~~~C~IC~~~~~~p~~--~~Cg-H~fC~~Ci~~~~~~------~~~CP~Cr~~~~ 60 (81)
T 2csy_A 14 IPFRCFICRQAFQNPVV--TKCR-HYFCESCALEHFRA------TPRCYICDQPTG 60 (81)
T ss_dssp CCSBCSSSCSBCCSEEE--CTTS-CEEEHHHHHHHHHH------CSBCSSSCCBCC
T ss_pred CCCCCcCCCchhcCeeE--ccCC-CHhHHHHHHHHHHC------CCcCCCcCcccc
Confidence 45678888766554443 5799 89999999999842 458999998654
No 37
>4e2g_A Cupin 2 conserved barrel domain protein; MCSG, PSI-biology, structural genomics, GEBA, midwest center structural genomics; HET: MSE; 1.86A {Sphaerobacter thermophilus}
Probab=88.75 E-value=0.33 Score=43.93 Aligned_cols=59 Identities=27% Similarity=0.359 Sum_probs=40.5
Q ss_pred ccCCcccCccccCHHHHHHHHHHhCccceEEEeecCceeEecCCCccccccccccceecccccCcc
Q 002330 814 VIHPIHDQCFYLSSEHKKKLKEEFGVEPWTFEQKLGEAVFIPAGCPHQVRNLKSCTKVAVDFVSPE 879 (935)
Q Consensus 814 v~dPIHDQ~fYLt~ehk~rLkEEyGVepWtf~Q~lGEAVFIPAGCPHQVRNLkSCIKVAlDFVSPE 879 (935)
..|| ++|-+|+-.-.- ++-|..-++.=..||+|+||+|.||.++|... --+.+.+++|-
T Consensus 57 H~H~-~~e~~~vl~G~~-----~~~~~~~~~~l~~Gd~~~ip~~~~H~~~~~~~-~~~~l~v~~p~ 115 (126)
T 4e2g_A 57 HEHP-HEQAGVMLEGTL-----ELTIGEETRVLRPGMAYTIPGGVRHRARTFED-GCLVLDIFSPP 115 (126)
T ss_dssp ECCS-SEEEEEEEEECE-----EEEETTEEEEECTTEEEEECTTCCEEEECCTT-CEEEEEEEESC
T ss_pred ccCC-CceEEEEEEeEE-----EEEECCEEEEeCCCCEEEECCCCcEEeEECCC-CEEEEEEECCC
Confidence 3566 466666544322 23444556777899999999999999999988 33455666664
No 38
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=88.22 E-value=0.46 Score=37.42 Aligned_cols=46 Identities=20% Similarity=0.671 Sum_probs=32.6
Q ss_pred CCCcccccccCCC--CceEecCcCCCCcccHhHHhhhCCCCChhhhhccCCCCCC
Q 002330 200 ERIKCHQCMKSER--KYVVPCGKCRTKVYCIQCIKQWYPKMSELDVAEICPFCRR 252 (935)
Q Consensus 200 ~~~~CHQCrqk~~--~~~v~C~~C~r~~FC~~CL~~rY~e~~~edv~w~CP~CRg 252 (935)
+...|.-|...-. ...+....|+ ..||..||..|... ...||.||.
T Consensus 4 ~~~~C~IC~~~~~~~~~~~~~~~C~-H~f~~~Ci~~w~~~------~~~CP~Cr~ 51 (55)
T 1iym_A 4 DGVECAVCLAELEDGEEARFLPRCG-HGFHAECVDMWLGS------HSTCPLCRL 51 (55)
T ss_dssp CSCCCTTTCCCCCTTSCCEECSSSC-CEECTTHHHHTTTT------CCSCSSSCC
T ss_pred CCCcCccCCccccCCCceEECCCCC-CcccHHHHHHHHHc------CCcCcCCCC
Confidence 3456777876532 2244445698 89999999999854 347999986
No 39
>1tot_A CREB-binding protein; zinc binding, CBP, TAZ2, transferase; NMR {Mus musculus} SCOP: g.44.1.6
Probab=88.02 E-value=0.15 Score=41.94 Aligned_cols=33 Identities=27% Similarity=0.863 Sum_probs=28.4
Q ss_pred cccccCccccccccccccCcC-CcccchhchHHhh
Q 002330 330 RVYCNHCATSIIDLHRSCPKC-SYELCLTCCKEIC 363 (935)
Q Consensus 330 RvyCDnCkTSI~D~HRSC~~C-syDLCL~CC~ELR 363 (935)
.+.||+|...| -.-..|..| .||||..|...-.
T Consensus 6 ~~~Cd~C~~~i-g~R~~C~~C~dyDLC~~C~~~~~ 39 (52)
T 1tot_A 6 VYTCNECKHHV-ETRWHCTVCEDYDLCINCYNTKS 39 (52)
T ss_dssp CEEETTTTEEE-SSEEEESSSSSCEECHHHHHHHC
T ss_pred EEECCCCCCCC-cceEEcCCCCCchhHHHHHhCCC
Confidence 47899999996 678889999 6999999998754
No 40
>2ozj_A Cupin 2, conserved barrel; cupin superfamily protein, struct genomics, joint center for structural genomics, JCSG; HET: MSE; 1.60A {Desulfitobacterium hafniense}
Probab=87.93 E-value=0.18 Score=45.07 Aligned_cols=36 Identities=8% Similarity=0.132 Sum_probs=28.4
Q ss_pred hCccceEEEeecCceeEecCCCccccccccccceec
Q 002330 837 FGVEPWTFEQKLGEAVFIPAGCPHQVRNLKSCTKVA 872 (935)
Q Consensus 837 yGVepWtf~Q~lGEAVFIPAGCPHQVRNLkSCIKVA 872 (935)
+.|..=++.=..||+++||||.||.++|...|.=+.
T Consensus 71 ~~i~~~~~~l~~Gd~i~i~~~~~H~~~~~~~~~~~~ 106 (114)
T 2ozj_A 71 ITFDDQKIDLVPEDVLMVPAHKIHAIAGKGRFKMLQ 106 (114)
T ss_dssp EEETTEEEEECTTCEEEECTTCCBEEEEEEEEEEEE
T ss_pred EEECCEEEEecCCCEEEECCCCcEEEEeCCCcEEEE
Confidence 445556777889999999999999999986664433
No 41
>1juh_A Quercetin 2,3-dioxygenase; cupin, glycoprotein, beta sandwich, oxidoreduct; HET: NAG BMA MAN; 1.60A {Aspergillus japonicus} SCOP: b.82.1.5 PDB: 1gqh_A* 1h1i_A* 1h1m_A* 1gqg_A*
Probab=87.77 E-value=0.21 Score=54.56 Aligned_cols=40 Identities=20% Similarity=0.270 Sum_probs=34.0
Q ss_pred EEEeecCceeEecCCCccccccccccceecccccCc-cchHH
Q 002330 843 TFEQKLGEAVFIPAGCPHQVRNLKSCTKVAVDFVSP-ENVDE 883 (935)
Q Consensus 843 tf~Q~lGEAVFIPAGCPHQVRNLkSCIKVAlDFVSP-EnV~e 883 (935)
++.=+.||+||||||.||+++|.... +..+=|.+| ..++.
T Consensus 292 ~~~l~~Gd~~~iPag~~h~~~~~~~~-~~~l~~~~g~~g~~~ 332 (350)
T 1juh_A 292 ATELGSGDVAFIPGGVEFKYYSEAYF-SKVLFVSSGSDGLDQ 332 (350)
T ss_dssp CEEECTTCEEEECTTCCEEEEESSSS-EEEEEEEESSSSHHH
T ss_pred EEEeCCCCEEEECCCCCEEEEecCCe-EEEEEEecCccchhh
Confidence 45557899999999999999998776 888888888 77766
No 42
>2xlg_A SLL1785 protein, CUCA; metal binding protein, cupin; 1.80A {Synechocystis SP} PDB: 2xl7_A 2xl9_A 2xlf_A* 2xla_A
Probab=87.77 E-value=0.32 Score=50.88 Aligned_cols=76 Identities=13% Similarity=0.153 Sum_probs=52.9
Q ss_pred ccCCcccCccccCHHHHHHHHHHh--------Cccce----------EEEeecCceeEecCCCccccccccccc-eeccc
Q 002330 814 VIHPIHDQCFYLSSEHKKKLKEEF--------GVEPW----------TFEQKLGEAVFIPAGCPHQVRNLKSCT-KVAVD 874 (935)
Q Consensus 814 v~dPIHDQ~fYLt~ehk~rLkEEy--------GVepW----------tf~Q~lGEAVFIPAGCPHQVRNLkSCI-KVAlD 874 (935)
..||-.+..||+-.-.-. + .. |-+|| ++.=..||.||||+|+||..+|.-.-- ++.+=
T Consensus 59 H~H~~~~E~~yVLeG~~~-~--~v~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GD~i~iP~g~~H~~~N~~~~~~~~~l~ 135 (239)
T 2xlg_A 59 HIHYFINEWFWTPEGGIE-L--FHSTKQYPNMDELPVVGGAGRGDLYSIQSEPKQLIYSPNHYMHGFVNPTDKTLPIVFV 135 (239)
T ss_dssp EEESSEEEEEEETTCCCE-E--EEEEEECCCTTSCCSTTTTCCEEEEEEECCTTEEEEECTTEEEEEECCSSSCEEEEEE
T ss_pred eECCCccEEEEEEEeEEE-E--EEEecccccCCCcccccccccCceeEEEECCCCEEEECCCCCEEEEeCCCCCEEEEEE
Confidence 456666777776544221 1 12 44666 788889999999999999999976532 23133
Q ss_pred cc----------CccchHHHHHHHHHhh
Q 002330 875 FV----------SPENVDECLRLTKEFR 892 (935)
Q Consensus 875 FV----------SPEnV~eC~rLteEfR 892 (935)
++ +|..+.++++...+..
T Consensus 136 ~~~~~~~~~~~~~p~~~e~~f~~l~~~~ 163 (239)
T 2xlg_A 136 WMRNEVAPDFPYHDGGMREYFQAVGPRI 163 (239)
T ss_dssp EEECSSCTTCSCTTCSHHHHHHHHSCBC
T ss_pred EEecccChhhccCcchHHHHHHHhhhhc
Confidence 34 8888999998887654
No 43
>2fqp_A Hypothetical protein BP2299; double-stranded beta-helix fold, structural genomics, joint for structural genomics, JCSG; HET: 1PE; 1.80A {Bordetella pertussis tohama I}
Probab=87.76 E-value=0.24 Score=43.48 Aligned_cols=25 Identities=28% Similarity=0.286 Sum_probs=21.5
Q ss_pred EEEeecCceeEecCCCccccccccc
Q 002330 843 TFEQKLGEAVFIPAGCPHQVRNLKS 867 (935)
Q Consensus 843 tf~Q~lGEAVFIPAGCPHQVRNLkS 867 (935)
++.=..||+|+||||.||+++|.-+
T Consensus 60 ~~~l~~Gd~~~~p~~~~H~~~N~g~ 84 (97)
T 2fqp_A 60 TSQLTRGVSYTRPEGVEHNVINPSD 84 (97)
T ss_dssp EEEECTTCCEEECTTCEEEEECCSS
T ss_pred EEEEcCCCEEEeCCCCcccCEeCCC
Confidence 4555779999999999999999864
No 44
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=87.61 E-value=0.16 Score=43.05 Aligned_cols=53 Identities=21% Similarity=0.486 Sum_probs=35.7
Q ss_pred CCCcccccccCCCCceEecCcCCCCcccHhHHhhhCCCCChhhhhccCCCCCCccc
Q 002330 200 ERIKCHQCMKSERKYVVPCGKCRTKVYCIQCIKQWYPKMSELDVAEICPFCRRNCN 255 (935)
Q Consensus 200 ~~~~CHQCrqk~~~~~v~C~~C~r~~FC~~CL~~rY~e~~~edv~w~CP~CRgiCN 255 (935)
....|--|...-...++ ..|+ ..||..||..|+...........||.||....
T Consensus 18 ~~~~C~IC~~~~~~p~~--~~Cg-H~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~ 70 (85)
T 2ecv_A 18 EEVTCPICLELLTQPLS--LDCG-HSFCQACLTANHKKSMLDKGESSCPVCRISYQ 70 (85)
T ss_dssp CCCCCTTTCSCCSSCBC--CSSS-CCBCTTHHHHHHHHHHHTTSCCCCTTTCCSSC
T ss_pred CCCCCCCCCcccCCcee--CCCC-CHHHHHHHHHHHHHhhcCCCCCcCCCCCCccC
Confidence 35678888876543332 2698 89999999999753111123578999987543
No 45
>3d82_A Cupin 2, conserved barrel domain protein; structural genomics, joint center for structural genomics; 2.05A {Shewanella frigidimarina ncimb 400}
Probab=87.53 E-value=0.26 Score=42.51 Aligned_cols=28 Identities=25% Similarity=0.458 Sum_probs=23.1
Q ss_pred EEEeecCceeEecCCCccccccccccce
Q 002330 843 TFEQKLGEAVFIPAGCPHQVRNLKSCTK 870 (935)
Q Consensus 843 tf~Q~lGEAVFIPAGCPHQVRNLkSCIK 870 (935)
++.=..||+|+||+|.+|+++|...|.=
T Consensus 69 ~~~l~~Gd~~~ip~~~~H~~~~~~~~~~ 96 (102)
T 3d82_A 69 NITLQAGEMYVIPKGVEHKPMAKEECKI 96 (102)
T ss_dssp EEEEETTEEEEECTTCCBEEEEEEEEEE
T ss_pred EEEEcCCCEEEECCCCeEeeEcCCCCEE
Confidence 4555789999999999999999865543
No 46
>2dip_A Zinc finger SWIM domain-containing protein 2; ZZ domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.44.1.6
Probab=87.47 E-value=0.19 Score=46.34 Aligned_cols=37 Identities=30% Similarity=0.814 Sum_probs=31.3
Q ss_pred CCCcccccCccc-cccccccccCcC-CcccchhchHHhh
Q 002330 327 NDERVYCNHCAT-SIIDLHRSCPKC-SYELCLTCCKEIC 363 (935)
Q Consensus 327 ~DERvyCDnCkT-SI~D~HRSC~~C-syDLCL~CC~ELR 363 (935)
.-..+.||.|.. +|.-+-..|..| .||||..|...-+
T Consensus 28 ~H~gv~Cd~C~~~pI~G~RykC~~C~d~DLC~~C~~~~~ 66 (98)
T 2dip_A 28 KHLGIPCNNCKQFPIEGKCYKCTECIEYHLCQECFDSYC 66 (98)
T ss_dssp SCCCCCCSSSCCSSCCSCEEEESSSSSCEEEHHHHHTTS
T ss_pred ccCCCCCcCCCCCCcccCeEECCCCCCccHHHHHHccCC
Confidence 334589999996 799999999999 8999999987653
No 47
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Probab=87.40 E-value=0.13 Score=49.55 Aligned_cols=47 Identities=19% Similarity=0.519 Sum_probs=34.6
Q ss_pred cCCCcccccccCCCCceEecCcCCCCcccHhHHhhhCCCCChhhhhccCCCCCCc
Q 002330 199 LERIKCHQCMKSERKYVVPCGKCRTKVYCIQCIKQWYPKMSELDVAEICPFCRRN 253 (935)
Q Consensus 199 ~~~~~CHQCrqk~~~~~v~C~~C~r~~FC~~CL~~rY~e~~~edv~w~CP~CRgi 253 (935)
.....|--|..--...++ ..|+ -.||..||..|... -...||.||.-
T Consensus 29 ~~~~~C~IC~~~~~~pv~--~~Cg-H~FC~~Ci~~~~~~-----~~~~CP~Cr~~ 75 (141)
T 3knv_A 29 EAKYLCSACRNVLRRPFQ--AQCG-HRYCSFCLASILSS-----GPQNCAACVHE 75 (141)
T ss_dssp CGGGBCTTTCSBCSSEEE--CTTS-CEEEHHHHHHHGGG-----SCEECHHHHHT
T ss_pred CcCcCCCCCChhhcCcEE--CCCC-CccCHHHHHHHHhc-----CCCCCCCCCCc
Confidence 456789999876655443 4899 99999999999842 23478888763
No 48
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=87.26 E-value=0.26 Score=38.76 Aligned_cols=46 Identities=17% Similarity=0.479 Sum_probs=34.0
Q ss_pred CCCcccccccCC--CCceEecCcCCCCcccHhHHhhhCCCCChhhhhccCCCCCC
Q 002330 200 ERIKCHQCMKSE--RKYVVPCGKCRTKVYCIQCIKQWYPKMSELDVAEICPFCRR 252 (935)
Q Consensus 200 ~~~~CHQCrqk~--~~~~v~C~~C~r~~FC~~CL~~rY~e~~~edv~w~CP~CRg 252 (935)
....|--|...- ....+....|+ ..||..||.+|... ...||.||.
T Consensus 4 ~~~~C~IC~~~~~~~~~~~~~~~Cg-H~fc~~Ci~~~~~~------~~~CP~Cr~ 51 (55)
T 2ecm_A 4 GSSGCPICLEDIHTSRVVAHVLPCG-HLLHRTCYEEMLKE------GYRCPLCSG 51 (55)
T ss_dssp CCCSCTTTCCCCCTTTSCEEECTTS-CEEETTHHHHHHHH------TCCCTTSCC
T ss_pred CCCcCcccChhhcCCCcCeEecCCC-CcccHHHHHHHHHc------CCcCCCCCC
Confidence 346788887653 23456667798 89999999999743 268999986
No 49
>2e5r_A Dystrobrevin alpha; ZZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=87.24 E-value=0.23 Score=42.28 Aligned_cols=34 Identities=29% Similarity=0.798 Sum_probs=30.2
Q ss_pred ccccCccc-cccccccccCcC-CcccchhchHHhhc
Q 002330 331 VYCNHCAT-SIIDLHRSCPKC-SYELCLTCCKEICE 364 (935)
Q Consensus 331 vyCDnCkT-SI~D~HRSC~~C-syDLCL~CC~ELR~ 364 (935)
+.||.|.. +|.-+-..|..| .||||..|...-+.
T Consensus 12 ~~Cd~C~~~pi~G~RykC~~C~d~DLC~~C~~~g~~ 47 (63)
T 2e5r_A 12 VECSYCHSESMMGFRYRCQQCHNYQLCQDCFWRGHA 47 (63)
T ss_dssp SCCSSSCCCSSCSCEEEESSCSSCEECHHHHHHCCC
T ss_pred CCCcCCCCcceecceEEecCCCCchhHHHHHhCCCc
Confidence 88999996 599999999999 79999999987554
No 50
>3ibm_A Cupin 2, conserved barrel domain protein; cupin 2 family, metal-binding site, beta barrel, PSI-2, NYSG structural genomics; 2.00A {Halorhodospira halophila SL1}
Probab=86.90 E-value=0.22 Score=48.74 Aligned_cols=60 Identities=15% Similarity=0.117 Sum_probs=39.9
Q ss_pred ccCCcccCccccCHHHHHHHHHHhCccceEEEeecCceeEecCCCcccccccc-ccceecccccCcc
Q 002330 814 VIHPIHDQCFYLSSEHKKKLKEEFGVEPWTFEQKLGEAVFIPAGCPHQVRNLK-SCTKVAVDFVSPE 879 (935)
Q Consensus 814 v~dPIHDQ~fYLt~ehk~rLkEEyGVepWtf~Q~lGEAVFIPAGCPHQVRNLk-SCIKVAlDFVSPE 879 (935)
..|+ ++|-+|+-.-.- ++-|..=++.=..||+||||+|.||+++|.. +---+.+-+++|+
T Consensus 72 H~H~-~~E~~~Vl~G~~-----~~~i~~~~~~l~~Gd~i~ip~~~~H~~~n~~~~~~~~~l~i~~~~ 132 (167)
T 3ibm_A 72 ERHE-HTHVVMVVRGHA-----EVVLDDRVEPLTPLDCVYIAPHAWHQIHATGANEPLGFLCIVDSD 132 (167)
T ss_dssp BBCS-SCEEEEEEESEE-----EEEETTEEEEECTTCEEEECTTCCEEEEEESSSCCEEEEEEEESS
T ss_pred ccCC-CcEEEEEEeCEE-----EEEECCEEEEECCCCEEEECCCCcEEEEeCCCCCCEEEEEEEeCC
Confidence 4566 677777654332 2344555777789999999999999999987 4322333445554
No 51
>2gu9_A Tetracenomycin polyketide synthesis protein; X-RAY diffraction, cupin, immune system; 1.40A {Xanthomonas campestris} PDB: 2ilb_A 3h50_A
Probab=86.88 E-value=0.34 Score=42.36 Aligned_cols=40 Identities=25% Similarity=0.375 Sum_probs=29.1
Q ss_pred cceEEEeecCceeEecCCCccccccccccceecccccCcc
Q 002330 840 EPWTFEQKLGEAVFIPAGCPHQVRNLKSCTKVAVDFVSPE 879 (935)
Q Consensus 840 epWtf~Q~lGEAVFIPAGCPHQVRNLkSCIKVAlDFVSPE 879 (935)
..=++.=..||+++||+|.||+.+|..+---+.+-+++|.
T Consensus 60 ~~~~~~l~~Gd~~~i~~~~~H~~~~~~~~~~~~~~v~~~~ 99 (113)
T 2gu9_A 60 DGHTQALQAGSLIAIERGQAHEIRNTGDTPLKTVNFYHPP 99 (113)
T ss_dssp TTEEEEECTTEEEEECTTCCEEEECCSSSCEEEEEEEESC
T ss_pred CCEEEEeCCCCEEEECCCCcEEeEcCCCCCEEEEEEECCC
Confidence 3445677899999999999999999865433344445554
No 52
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=86.69 E-value=0.35 Score=40.82 Aligned_cols=47 Identities=23% Similarity=0.688 Sum_probs=34.1
Q ss_pred cCCCcccccccCCC-CceEecCcCCCCcccHhHHhhhCCCCChhhhhccCCCCCC
Q 002330 199 LERIKCHQCMKSER-KYVVPCGKCRTKVYCIQCIKQWYPKMSELDVAEICPFCRR 252 (935)
Q Consensus 199 ~~~~~CHQCrqk~~-~~~v~C~~C~r~~FC~~CL~~rY~e~~~edv~w~CP~CRg 252 (935)
.....|.-|...-. ...+....|+ ..||..||.+|... ...||.||.
T Consensus 21 ~~~~~C~IC~~~~~~~~~~~~l~C~-H~fh~~Ci~~w~~~------~~~CP~Cr~ 68 (75)
T 1x4j_A 21 SEQTLCVVCMCDFESRQLLRVLPCN-HEFHAKCVDKWLKA------NRTCPICRA 68 (75)
T ss_dssp SSCCEETTTTEECCBTCEEEEETTT-EEEETTHHHHHHHH------CSSCTTTCC
T ss_pred CCCCCCeECCcccCCCCeEEEECCC-CHhHHHHHHHHHHc------CCcCcCcCC
Confidence 34567999986532 3344555698 88999999999742 358999986
No 53
>1o5u_A Novel thermotoga maritima enzyme TM1112; cupin, structural genomics center for structural genomics, JCSG, protein structure INI PSI; 1.83A {Thermotoga maritima} SCOP: b.82.1.8 PDB: 1lkn_A 2k9z_A
Probab=86.66 E-value=0.22 Score=45.34 Aligned_cols=31 Identities=19% Similarity=0.236 Sum_probs=25.9
Q ss_pred ceEEEeecCceeEecCCCcccccccccccee
Q 002330 841 PWTFEQKLGEAVFIPAGCPHQVRNLKSCTKV 871 (935)
Q Consensus 841 pWtf~Q~lGEAVFIPAGCPHQVRNLkSCIKV 871 (935)
.-++.=..||+|+||+|.||+.+|....-|+
T Consensus 67 g~~~~l~~GD~i~ip~g~~H~~~n~~~~~~~ 97 (101)
T 1o5u_A 67 GKKYVIEKGDLVTFPKGLRCRWKVLEPVRKH 97 (101)
T ss_dssp CCEEEEETTCEEEECTTCEEEEEEEEEEEEE
T ss_pred CCEEEECCCCEEEECCCCcEEEEeCCCeeEE
Confidence 4567788999999999999999998765543
No 54
>3kgz_A Cupin 2 conserved barrel domain protein; metalloprotein, structural genomics, PSI-2, protein structur initiative; 1.85A {Rhodopseudomonas palustris}
Probab=86.54 E-value=0.38 Score=46.86 Aligned_cols=41 Identities=24% Similarity=0.173 Sum_probs=29.5
Q ss_pred ccceEEEeecCceeEecCCCccccccccccceecccccCcc
Q 002330 839 VEPWTFEQKLGEAVFIPAGCPHQVRNLKSCTKVAVDFVSPE 879 (935)
Q Consensus 839 VepWtf~Q~lGEAVFIPAGCPHQVRNLkSCIKVAlDFVSPE 879 (935)
|..=++.=..||+||||+|++|+++|..+---+-+-+++|+
T Consensus 79 v~g~~~~l~~Gd~i~ip~~~~H~~~n~g~~~~~~l~i~~~~ 119 (156)
T 3kgz_A 79 VGETISDVAQGDLVFIPPMTWHQFRANRGDCLGFLCVVNAA 119 (156)
T ss_dssp ETTEEEEEETTCEEEECTTCCEEEECCSSSCEEEEEEEESS
T ss_pred ECCEEEEeCCCCEEEECCCCcEEeEeCCCCCEEEEEEEeCC
Confidence 44446667889999999999999999876433334444544
No 55
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=86.54 E-value=0.3 Score=40.26 Aligned_cols=45 Identities=18% Similarity=0.538 Sum_probs=32.3
Q ss_pred CCcccccccCCCCceEecCcCCCCcccHhHHhhhCCCCChhhhhccCCCCCCc
Q 002330 201 RIKCHQCMKSERKYVVPCGKCRTKVYCIQCIKQWYPKMSELDVAEICPFCRRN 253 (935)
Q Consensus 201 ~~~CHQCrqk~~~~~v~C~~C~r~~FC~~CL~~rY~e~~~edv~w~CP~CRgi 253 (935)
...|--|...-...++ ..|+ ..||..||..|.. .....||.||..
T Consensus 15 ~~~C~IC~~~~~~p~~--~~Cg-H~fC~~Ci~~~~~-----~~~~~CP~Cr~~ 59 (66)
T 2ecy_A 15 KYKCEKCHLVLCSPKQ--TECG-HRFCESCMAALLS-----SSSPKCTACQES 59 (66)
T ss_dssp CEECTTTCCEESSCCC--CSSS-CCCCHHHHHHHHT-----TSSCCCTTTCCC
T ss_pred CCCCCCCChHhcCeeE--CCCC-CHHHHHHHHHHHH-----hCcCCCCCCCcC
Confidence 4668888755443333 4799 8999999999985 223579999864
No 56
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=86.43 E-value=0.47 Score=39.21 Aligned_cols=47 Identities=26% Similarity=0.569 Sum_probs=33.1
Q ss_pred cCCCcccccccCC-CCceEecCcCCCCcccHhHHhhhCCCCChhhhhccCCCCCC
Q 002330 199 LERIKCHQCMKSE-RKYVVPCGKCRTKVYCIQCIKQWYPKMSELDVAEICPFCRR 252 (935)
Q Consensus 199 ~~~~~CHQCrqk~-~~~~v~C~~C~r~~FC~~CL~~rY~e~~~edv~w~CP~CRg 252 (935)
.....|.-|...- ....+....|+ ..||..||..|... ...||.||.
T Consensus 12 ~~~~~C~IC~~~~~~~~~~~~~~C~-H~fc~~Ci~~~~~~------~~~CP~Cr~ 59 (69)
T 2kiz_A 12 DTEEKCTICLSILEEGEDVRRLPCM-HLFHQVCVDQWLIT------NKKCPICRV 59 (69)
T ss_dssp TCCCSBTTTTBCCCSSSCEEECTTS-CEEEHHHHHHHHHH------CSBCTTTCS
T ss_pred CCCCCCeeCCccccCCCcEEEeCCC-CHHHHHHHHHHHHc------CCCCcCcCc
Confidence 4456788887543 22334555798 88999999999742 346999986
No 57
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=86.26 E-value=0.84 Score=40.49 Aligned_cols=46 Identities=22% Similarity=0.640 Sum_probs=34.3
Q ss_pred CCCcccccccCCCCceEecCcCCCCcccHhHHhhhCCCCChhhhhccCCCCCCc
Q 002330 200 ERIKCHQCMKSERKYVVPCGKCRTKVYCIQCIKQWYPKMSELDVAEICPFCRRN 253 (935)
Q Consensus 200 ~~~~CHQCrqk~~~~~v~C~~C~r~~FC~~CL~~rY~e~~~edv~w~CP~CRgi 253 (935)
....|--|...-.. .+....|+ ..||..||..|... ...||.||..
T Consensus 21 ~~~~C~IC~~~~~~-p~~~~~Cg-H~fC~~Ci~~~~~~------~~~CP~Cr~~ 66 (99)
T 2y43_A 21 DLLRCGICFEYFNI-AMIIPQCS-HNYCSLCIRKFLSY------KTQCPTCCVT 66 (99)
T ss_dssp HHTBCTTTCSBCSS-EEECTTTC-CEEEHHHHHHHHTT------CCBCTTTCCB
T ss_pred CCCCcccCChhhCC-cCEECCCC-CHhhHHHHHHHHHC------CCCCCCCCCc
Confidence 45678888766544 33445799 99999999999863 2589999874
No 58
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=85.77 E-value=0.69 Score=36.64 Aligned_cols=45 Identities=24% Similarity=0.803 Sum_probs=32.5
Q ss_pred CCCcccccccCCCCceEecCcCCCCcccHhHHhhhCCCCChhhhhccCCCC
Q 002330 200 ERIKCHQCMKSERKYVVPCGKCRTKVYCIQCIKQWYPKMSELDVAEICPFC 250 (935)
Q Consensus 200 ~~~~CHQCrqk~~~~~v~C~~C~r~~FC~~CL~~rY~e~~~edv~w~CP~C 250 (935)
....|--|...-...++ ..|+ ..||..||..|+... .....||.|
T Consensus 14 ~~~~C~IC~~~~~~p~~--~~Cg-H~fC~~Ci~~~~~~~---~~~~~CP~C 58 (58)
T 2ecj_A 14 VEASCSVCLEYLKEPVI--IECG-HNFCKACITRWWEDL---ERDFPCPVC 58 (58)
T ss_dssp CCCBCSSSCCBCSSCCC--CSSC-CCCCHHHHHHHTTSS---CCSCCCSCC
T ss_pred cCCCCccCCcccCccEe--CCCC-CccCHHHHHHHHHhc---CCCCCCCCC
Confidence 35678888876544333 4698 889999999997642 235689988
No 59
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=85.49 E-value=0.75 Score=37.38 Aligned_cols=45 Identities=29% Similarity=0.624 Sum_probs=32.6
Q ss_pred CCCcccccccCCCCceEecCcCCCCcccHhHHhhhCCCCChhhhhccCCCC
Q 002330 200 ERIKCHQCMKSERKYVVPCGKCRTKVYCIQCIKQWYPKMSELDVAEICPFC 250 (935)
Q Consensus 200 ~~~~CHQCrqk~~~~~v~C~~C~r~~FC~~CL~~rY~e~~~edv~w~CP~C 250 (935)
....|--|...-...++. .|+ ..||..||.+|... ......||.|
T Consensus 19 ~~~~C~IC~~~~~~p~~~--~Cg-H~fC~~Ci~~~~~~---~~~~~~CP~C 63 (63)
T 2ysj_A 19 EEVICPICLDILQKPVTI--DCG-HNFCLKCITQIGET---SCGFFKCPLC 63 (63)
T ss_dssp CCCBCTTTCSBCSSCEEC--TTS-SEECHHHHHHHHHH---CSSCCCCSCC
T ss_pred cCCCCCcCCchhCCeEEe--CCC-CcchHHHHHHHHHc---CCCCCcCcCC
Confidence 456788898665544443 799 89999999999852 1234589988
No 60
>3h7j_A Bacilysin biosynthesis protein BACB; YWFC, bacilysin synthesis, anticapsin synthesis, BI-Cu double stranded beta helix, antibiotic biosynthesis; HET: PPY; 1.87A {Bacillus subtilis} PDB: 3h7y_A* 3h9a_A*
Probab=85.42 E-value=0.29 Score=50.34 Aligned_cols=60 Identities=22% Similarity=0.180 Sum_probs=41.2
Q ss_pred ccCCcccCccccCHHHHHHHHHHhCccceEEEeecCceeEecCCCccccccccccceecccccCcc
Q 002330 814 VIHPIHDQCFYLSSEHKKKLKEEFGVEPWTFEQKLGEAVFIPAGCPHQVRNLKSCTKVAVDFVSPE 879 (935)
Q Consensus 814 v~dPIHDQ~fYLt~ehk~rLkEEyGVepWtf~Q~lGEAVFIPAGCPHQVRNLkSCIKVAlDFVSPE 879 (935)
..|| +.|-+|+..-.- ++-|..=++.=..||+|+||+|+||+++|.-.---+.++.++|-
T Consensus 162 H~H~-~~e~~~Vl~G~~-----~~~i~~~~~~l~~Gd~i~ip~~~~H~~~n~~~~~~~~l~v~~p~ 221 (243)
T 3h7j_A 162 HKHR-NEQIGICIGGGY-----DMTVEGCTVEMKFGTAYFCEPREDHGAINRSEKESKSINIFFPP 221 (243)
T ss_dssp ECCS-SEEEEEECSSCE-----EEEETTEEEEECTTCEEEECTTCCEEEEECSSSCEEEEEEEESC
T ss_pred EeCC-CcEEEEEEECEE-----EEEECCEEEEECCCCEEEECCCCcEEeEeCCCCCEEEEEEEcCC
Confidence 3555 567677655432 23444446667899999999999999999866544556666664
No 61
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=84.65 E-value=0.42 Score=40.29 Aligned_cols=52 Identities=19% Similarity=0.475 Sum_probs=35.6
Q ss_pred CCCcccccccCCCCceEecCcCCCCcccHhHHhhhCCCCC-hhhhhccCCCCCCcc
Q 002330 200 ERIKCHQCMKSERKYVVPCGKCRTKVYCIQCIKQWYPKMS-ELDVAEICPFCRRNC 254 (935)
Q Consensus 200 ~~~~CHQCrqk~~~~~v~C~~C~r~~FC~~CL~~rY~e~~-~edv~w~CP~CRgiC 254 (935)
....|--|...-...++ ..|+ ..||..||..|+.... .......||.||...
T Consensus 11 ~~~~C~IC~~~~~~p~~--l~Cg-H~fC~~Ci~~~~~~~~~~~~~~~~CP~Cr~~~ 63 (79)
T 2egp_A 11 EEVTCPICLELLTEPLS--LDCG-HSLCRACITVSNKEAVTSMGGKSSCPVCGISY 63 (79)
T ss_dssp CCCEETTTTEECSSCCC--CSSS-CCCCHHHHSCCCCCCSSSCCCCCCCSSSCCCC
T ss_pred cCCCCcCCCcccCCeeE--CCCC-CHHHHHHHHHHHHhcccCCCCCCcCCCCCCcC
Confidence 35678888765543333 3699 8999999999986521 112356899998754
No 62
>2ozi_A Hypothetical protein RPA4178; APC6210, putative protein RPA4178, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.15A {Rhodopseudomonas palustris CGA009} PDB: 3lag_A*
Probab=84.35 E-value=0.3 Score=44.20 Aligned_cols=23 Identities=35% Similarity=0.437 Sum_probs=20.3
Q ss_pred EeecCceeEecCCCccccccccc
Q 002330 845 EQKLGEAVFIPAGCPHQVRNLKS 867 (935)
Q Consensus 845 ~Q~lGEAVFIPAGCPHQVRNLkS 867 (935)
.=..||++|+|||.+|+++|--+
T Consensus 62 ~l~aGd~~~~p~G~~H~~~N~g~ 84 (98)
T 2ozi_A 62 QLKTGRSYARKAGVQHDVRNEST 84 (98)
T ss_dssp CBCTTCCEEECTTCEEEEEECSS
T ss_pred EECCCCEEEECCCCceeCEECCC
Confidence 34689999999999999999765
No 63
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=83.96 E-value=1.6 Score=39.36 Aligned_cols=47 Identities=19% Similarity=0.518 Sum_probs=35.6
Q ss_pred cCCCcccccccCCCCceEecCcCCCCcccHhHHhhhCCCCChhhhhccCCCCCCc
Q 002330 199 LERIKCHQCMKSERKYVVPCGKCRTKVYCIQCIKQWYPKMSELDVAEICPFCRRN 253 (935)
Q Consensus 199 ~~~~~CHQCrqk~~~~~v~C~~C~r~~FC~~CL~~rY~e~~~edv~w~CP~CRgi 253 (935)
.....|--|...-.. .+....|+ ..||..||..|.... ..||.||..
T Consensus 13 ~~~~~C~IC~~~~~~-p~~~~~Cg-H~fC~~Ci~~~~~~~------~~CP~Cr~~ 59 (108)
T 2ckl_A 13 NPHLMCVLCGGYFID-ATTIIECL-HSFCKTCIVRYLETS------KYCPICDVQ 59 (108)
T ss_dssp GGGTBCTTTSSBCSS-EEEETTTC-CEEEHHHHHHHHTSC------SBCTTTCCB
T ss_pred CCcCCCccCChHHhC-cCEeCCCC-ChhhHHHHHHHHHhC------CcCcCCCcc
Confidence 456789999765543 44445799 999999999998642 689999874
No 64
>2i45_A Hypothetical protein; neisseria meningitidis cupin domain, structural genomics, PS protein structure initiative; 2.50A {Neisseria meningitidis}
Probab=83.91 E-value=0.49 Score=41.86 Aligned_cols=38 Identities=18% Similarity=0.404 Sum_probs=26.6
Q ss_pred eEEEeecCceeEecCCCccccccccccceecccccCccchH
Q 002330 842 WTFEQKLGEAVFIPAGCPHQVRNLKSCTKVAVDFVSPENVD 882 (935)
Q Consensus 842 Wtf~Q~lGEAVFIPAGCPHQVRNLkSCIKVAlDFVSPEnV~ 882 (935)
=++.=..||+++||+|.||..+|...|.=+ ++.|....
T Consensus 67 ~~~~l~~Gd~~~ip~~~~H~~~~~~~~~~l---~i~~~~~~ 104 (107)
T 2i45_A 67 GSMTIREGEMAVVPKSVSHRPRSENGCSLV---LIELSDPS 104 (107)
T ss_dssp CEEEECTTEEEEECTTCCEEEEEEEEEEEE---EEECC---
T ss_pred cEEEECCCCEEEECCCCcEeeEeCCCeEEE---EEECCCcc
Confidence 366778899999999999999997654322 45555443
No 65
>1y9q_A Transcriptional regulator, HTH_3 family; transcriptional regulaator, strucutral genomics, protein structure initiative, PSI; 1.90A {Vibrio cholerae} SCOP: a.35.1.8 b.82.1.15
Probab=83.74 E-value=0.36 Score=47.30 Aligned_cols=43 Identities=14% Similarity=0.060 Sum_probs=33.4
Q ss_pred hCccceEEEeecCceeEecCCCccccccccccceecccccCccc
Q 002330 837 FGVEPWTFEQKLGEAVFIPAGCPHQVRNLKSCTKVAVDFVSPEN 880 (935)
Q Consensus 837 yGVepWtf~Q~lGEAVFIPAGCPHQVRNLkSCIKVAlDFVSPEn 880 (935)
+.|..=++.=..||+||||+|.||+.+|.-+--- .+-++.|..
T Consensus 139 ~~~~~~~~~l~~GD~i~i~~~~~H~~~n~~~~~~-~l~v~~~~~ 181 (192)
T 1y9q_A 139 VFFDEQWHELQQGEHIRFFSDQPHGYAAVTEKAV-FQNIVAYPR 181 (192)
T ss_dssp EEETTEEEEECTTCEEEEECSSSEEEEESSSCEE-EEEEEECCC
T ss_pred EEECCEEEEeCCCCEEEEcCCCCeEeECCCCCcE-EEEEEecCc
Confidence 4556667788899999999999999999855333 666777754
No 66
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=83.65 E-value=0.5 Score=39.64 Aligned_cols=45 Identities=22% Similarity=0.539 Sum_probs=33.5
Q ss_pred CCcccccccCCCCceEecCcCCCCcccHhHHhhhCCCCChhhhhccCCCCCCc
Q 002330 201 RIKCHQCMKSERKYVVPCGKCRTKVYCIQCIKQWYPKMSELDVAEICPFCRRN 253 (935)
Q Consensus 201 ~~~CHQCrqk~~~~~v~C~~C~r~~FC~~CL~~rY~e~~~edv~w~CP~CRgi 253 (935)
...|--|...-.. .+.-..|+ ..||..||..|... ...||.||..
T Consensus 15 ~~~C~IC~~~~~~-p~~~~~Cg-H~fC~~Ci~~~~~~------~~~CP~Cr~~ 59 (72)
T 2djb_A 15 YILCSICKGYLID-ATTITECL-HTFCKSCIVRHFYY------SNRCPKCNIV 59 (72)
T ss_dssp GGSCTTTSSCCSS-CEECSSSC-CEECHHHHHHHHHH------CSSCTTTCCC
T ss_pred CCCCCCCChHHHC-cCEECCCC-CHHHHHHHHHHHHc------CCcCCCcCcc
Confidence 5678888765443 34445799 99999999999842 4689999874
No 67
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=83.62 E-value=0.59 Score=41.27 Aligned_cols=48 Identities=23% Similarity=0.572 Sum_probs=33.9
Q ss_pred cCCCcccccccCC-CCceEecCcCCCCcccHhHHhhhCCCCChhhhhccCCCCCCc
Q 002330 199 LERIKCHQCMKSE-RKYVVPCGKCRTKVYCIQCIKQWYPKMSELDVAEICPFCRRN 253 (935)
Q Consensus 199 ~~~~~CHQCrqk~-~~~~v~C~~C~r~~FC~~CL~~rY~e~~~edv~w~CP~CRgi 253 (935)
+....|.-|...- .+..+....|+ ..||..||..|... ...||.||..
T Consensus 38 ~~~~~C~IC~~~~~~~~~~~~l~C~-H~Fh~~Ci~~wl~~------~~~CP~Cr~~ 86 (91)
T 2l0b_A 38 GQEMCCPICCSEYVKGDVATELPCH-HYFHKPCVSIWLQK------SGTCPVCRCM 86 (91)
T ss_dssp SSCSEETTTTEECCTTCEEEEETTT-EEEEHHHHHHHHTT------TCBCTTTCCB
T ss_pred CCCCCCcccChhhcCCCcEEecCCC-ChHHHHHHHHHHHc------CCcCcCcCcc
Confidence 3456799997543 22334444599 89999999999853 2489999863
No 68
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=83.60 E-value=0.9 Score=38.40 Aligned_cols=47 Identities=23% Similarity=0.661 Sum_probs=32.3
Q ss_pred CCCcccccccCCC-CceEecCcCCCCcccHhHHhhhCCCCChhhhhccCCCCCCc
Q 002330 200 ERIKCHQCMKSER-KYVVPCGKCRTKVYCIQCIKQWYPKMSELDVAEICPFCRRN 253 (935)
Q Consensus 200 ~~~~CHQCrqk~~-~~~v~C~~C~r~~FC~~CL~~rY~e~~~edv~w~CP~CRgi 253 (935)
....|.-|...-. ...+.-..|+ ..||..||..|... ...||.||..
T Consensus 14 ~~~~C~IC~~~~~~~~~~~~~~C~-H~fc~~Ci~~~~~~------~~~CP~Cr~~ 61 (78)
T 2ect_A 14 SGLECPVCKEDYALGESVRQLPCN-HLFHDSCIVPWLEQ------HDSCPVCRKS 61 (78)
T ss_dssp SSCCCTTTTSCCCTTSCEEECTTS-CEEETTTTHHHHTT------TCSCTTTCCC
T ss_pred CCCCCeeCCccccCCCCEEEeCCC-CeecHHHHHHHHHc------CCcCcCcCCc
Confidence 3567888876532 1223333588 89999999999853 2489999874
No 69
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=83.43 E-value=0.77 Score=37.69 Aligned_cols=46 Identities=22% Similarity=0.701 Sum_probs=33.5
Q ss_pred CCCcccccccCCCCceEecCcCCCCcccHhHHhhhCCCCChhhhhccCCCCCCc
Q 002330 200 ERIKCHQCMKSERKYVVPCGKCRTKVYCIQCIKQWYPKMSELDVAEICPFCRRN 253 (935)
Q Consensus 200 ~~~~CHQCrqk~~~~~v~C~~C~r~~FC~~CL~~rY~e~~~edv~w~CP~CRgi 253 (935)
....|.-|...-.. .+....|+ ..||..||.+|.. ....||.||..
T Consensus 4 ~~~~C~IC~~~~~~-~~~~~~C~-H~fc~~Ci~~~~~------~~~~CP~Cr~~ 49 (68)
T 1chc_A 4 VAERCPICLEDPSN-YSMALPCL-HAFCYVCITRWIR------QNPTCPLCKVP 49 (68)
T ss_dssp CCCCCSSCCSCCCS-CEEETTTT-EEESTTHHHHHHH------HSCSTTTTCCC
T ss_pred CCCCCeeCCccccC-CcEecCCC-CeeHHHHHHHHHh------CcCcCcCCChh
Confidence 45678888876443 23455799 8899999999973 23589999864
No 70
>1lr5_A Auxin binding protein 1; beta jellyroll, double stranded beta helix, germin-like PROT protein binding; HET: NAG BMA MAN; 1.90A {Zea mays} SCOP: b.82.1.2 PDB: 1lrh_A*
Probab=83.33 E-value=0.42 Score=45.73 Aligned_cols=25 Identities=28% Similarity=0.237 Sum_probs=23.2
Q ss_pred eEEEeecCceeEecCCCcccccccc
Q 002330 842 WTFEQKLGEAVFIPAGCPHQVRNLK 866 (935)
Q Consensus 842 Wtf~Q~lGEAVFIPAGCPHQVRNLk 866 (935)
-++.=..||+|+||+|.||+++|..
T Consensus 88 ~~~~l~~Gd~i~ip~~~~H~~~n~~ 112 (163)
T 1lr5_A 88 QEIPFFQNTTFSIPVNDPHQVWNSD 112 (163)
T ss_dssp EEEEECTTEEEEECTTCCEEEECCC
T ss_pred EEEEeCCCCEEEECCCCcEEeEeCC
Confidence 7778889999999999999999986
No 71
>2lv9_A Histone-lysine N-methyltransferase MLL5; zinc finger, transcription, protein binding, NESG, northeast structural genomics consortium, SGC; NMR {Homo sapiens}
Probab=83.07 E-value=0.65 Score=42.41 Aligned_cols=47 Identities=21% Similarity=0.544 Sum_probs=32.8
Q ss_pred CCCcccccccCC-CCceEecCcCCCCcccHhHHhhhCCCCChhhhhccCCCCC
Q 002330 200 ERIKCHQCMKSE-RKYVVPCGKCRTKVYCIQCIKQWYPKMSELDVAEICPFCR 251 (935)
Q Consensus 200 ~~~~CHQCrqk~-~~~~v~C~~C~r~~FC~~CL~~rY~e~~~edv~w~CP~CR 251 (935)
....| .|++.. .+.++.|-.|. .-|=..|+.--....+ -.|.||.|+
T Consensus 27 d~vrC-iC~~~~~~~~mi~Cd~C~-~w~H~~C~~~~~~~~p---~~w~C~~C~ 74 (98)
T 2lv9_A 27 DVTRC-ICGFTHDDGYMICCDKCS-VWQHIDCMGIDRQHIP---DTYLCERCQ 74 (98)
T ss_dssp CBCCC-TTSCCSCSSCEEEBTTTC-BEEETTTTTCCTTSCC---SSBCCTTTS
T ss_pred CCEEe-ECCCccCCCcEEEcCCCC-CcCcCcCCCCCccCCC---CCEECCCCc
Confidence 35678 688776 57799999999 6777777753222221 269999996
No 72
>1weu_A Inhibitor of growth family, member 4; structural genomics, PHD domain, ING1-like protein, DNA binding protein, NPPSFA; NMR {Mus musculus} SCOP: g.50.1.2
Probab=82.76 E-value=2 Score=39.22 Aligned_cols=48 Identities=19% Similarity=0.547 Sum_probs=34.0
Q ss_pred cCCCcccccccCCCCceEecCc--CCCCcccHhHHhhhCCCCChh-hhhccCCCCCC
Q 002330 199 LERIKCHQCMKSERKYVVPCGK--CRTKVYCIQCIKQWYPKMSEL-DVAEICPFCRR 252 (935)
Q Consensus 199 ~~~~~CHQCrqk~~~~~v~C~~--C~r~~FC~~CL~~rY~e~~~e-dv~w~CP~CRg 252 (935)
.....| -|++...+.++.|-+ |.+.-|=..|+. ++.. .-.|.||.|+.
T Consensus 34 ~e~~yC-iC~~~~~g~MI~CD~~dC~~~WfH~~CVg-----l~~~p~g~W~Cp~C~~ 84 (91)
T 1weu_A 34 NEPTYC-LCHQVSYGEMIGCDNPDCSIEWFHFACVG-----LTTKPRGKWFCPRCSQ 84 (91)
T ss_dssp CCCBCS-TTCCBCCSCCCCCSCSSCSCCCCCSTTTT-----CSSCCCSSCCCTTTCC
T ss_pred CCCcEE-ECCCCCCCCEeEecCCCCCCCCEecccCC-----cCcCCCCCEECcCccC
Confidence 456788 899987788999999 765556566665 2221 24699999965
No 73
>2oa2_A BH2720 protein; 10175341, structural genomics, joint center for STRU genomics, JCSG, protein structure initiative, PSI-2, unknow function; HET: MSE; 1.41A {Bacillus halodurans}
Probab=82.62 E-value=0.66 Score=43.89 Aligned_cols=25 Identities=40% Similarity=0.375 Sum_probs=21.9
Q ss_pred EEEeecCceeEecCCCccccccccc
Q 002330 843 TFEQKLGEAVFIPAGCPHQVRNLKS 867 (935)
Q Consensus 843 tf~Q~lGEAVFIPAGCPHQVRNLkS 867 (935)
++.=..||+|+||+|.||+++|..+
T Consensus 89 ~~~l~~Gd~i~ip~g~~H~~~n~~~ 113 (148)
T 2oa2_A 89 QEEVFDDYAILIPAGTWHNVRNTGN 113 (148)
T ss_dssp EEEEETTCEEEECTTCEEEEEECSS
T ss_pred eEEECCCCEEEECCCCcEEEEECCC
Confidence 3677899999999999999999854
No 74
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=82.46 E-value=0.58 Score=39.60 Aligned_cols=46 Identities=26% Similarity=0.595 Sum_probs=32.9
Q ss_pred CCcccccccCCCCceEecCcCCCCcccHhHHhhhCCCCChhhhhccCCCCCC
Q 002330 201 RIKCHQCMKSERKYVVPCGKCRTKVYCIQCIKQWYPKMSELDVAEICPFCRR 252 (935)
Q Consensus 201 ~~~CHQCrqk~~~~~v~C~~C~r~~FC~~CL~~rY~e~~~edv~w~CP~CRg 252 (935)
...|--|...-...++ -..|+ ..||..||..|+... -...||.||.
T Consensus 15 ~~~C~IC~~~~~~p~~-~~~Cg-H~fC~~Ci~~~~~~~----~~~~CP~Cr~ 60 (74)
T 2yur_A 15 ELLCLICKDIMTDAVV-IPCCG-NSYCDECIRTALLES----DEHTCPTCHQ 60 (74)
T ss_dssp GGSCSSSCCCCTTCEE-CSSSC-CEECTTHHHHHHHHS----SSSCCSSSCC
T ss_pred CCCCcCCChHHhCCeE-cCCCC-CHHHHHHHHHHHHhc----CCCcCCCCCC
Confidence 5678888765554443 33499 999999999998521 1358999988
No 75
>3l2h_A Putative sugar phosphate isomerase; AFE_0303, structural GEN joint center for structural genomics, JCSG; HET: MSE CXS; 1.85A {Acidithiobacillus ferrooxidans}
Probab=82.39 E-value=0.68 Score=44.17 Aligned_cols=41 Identities=20% Similarity=0.136 Sum_probs=30.7
Q ss_pred ccceEEEeecCceeEecCC-CccccccccccceecccccCcc
Q 002330 839 VEPWTFEQKLGEAVFIPAG-CPHQVRNLKSCTKVAVDFVSPE 879 (935)
Q Consensus 839 VepWtf~Q~lGEAVFIPAG-CPHQVRNLkSCIKVAlDFVSPE 879 (935)
|..=++.=..||+|+||+| .+|+++|.-+---+.+-+.+|-
T Consensus 83 ~~~~~~~l~~Gd~i~i~~~~~~H~~~n~~~~~~~~l~v~~p~ 124 (162)
T 3l2h_A 83 MENDQYPIAPGDFVGFPCHAAAHSISNDGTETLVCLVIGQRL 124 (162)
T ss_dssp ETTEEEEECTTCEEEECTTSCCEEEECCSSSCEEEEEEEECC
T ss_pred ECCEEEEeCCCCEEEECCCCceEEeEeCCCCCEEEEEEECCC
Confidence 4444677889999999998 9999999766544455555553
No 76
>3ql9_A Transcriptional regulator ATRX; zinc finger, transcription, lysine trimethylation, protein, histone-binding protein, transcription-structural complex; HET: M3L; 0.93A {Homo sapiens} PDB: 3qla_A* 3qlc_A 3qln_A 2jm1_A
Probab=82.26 E-value=0.64 Score=44.92 Aligned_cols=53 Identities=17% Similarity=0.471 Sum_probs=40.6
Q ss_pred hccCCCcccccccCCCCceEecCcCCCCcccHhHHhhhCCCCChh-----hhhccCCCCCC
Q 002330 197 KELERIKCHQCMKSERKYVVPCGKCRTKVYCIQCIKQWYPKMSEL-----DVAEICPFCRR 252 (935)
Q Consensus 197 ~k~~~~~CHQCrqk~~~~~v~C~~C~r~~FC~~CL~~rY~e~~~e-----dv~w~CP~CRg 252 (935)
.++....|..|... +.++-|.+|. ..||..||..-.+.-... +-.|.|+.|+-
T Consensus 53 ~Dg~~~~C~vC~dG--G~LlcCd~Cp-r~Fc~~Cl~~~lg~~~l~~i~~~~~~W~C~~C~~ 110 (129)
T 3ql9_A 53 SDGMDEQCRWCAEG--GNLICCDFCH-NAFCKKCILRNLGRRELSTIMDENNQWYCYICHP 110 (129)
T ss_dssp TTSCBSSCTTTCCC--SEEEECSSSS-CEEEHHHHHHHTCHHHHHHHTCTTSCCCCTTTCC
T ss_pred CCCCCCcCeecCCC--CeeEecCCCc-hhhhHHHhCCCcchhHHHHhccCCCCeEcCCcCC
Confidence 35667789999966 5699999999 999999999876532222 34599999953
No 77
>3cew_A Uncharacterized cupin protein; all beta-protein, jelly-roll (cupin-2), structural genomics, protein structure initiative; 2.31A {Bacteroides fragilis}
Probab=82.12 E-value=0.54 Score=42.74 Aligned_cols=30 Identities=13% Similarity=0.157 Sum_probs=24.8
Q ss_pred CccceEEEeecCceeEecCCCccccccccc
Q 002330 838 GVEPWTFEQKLGEAVFIPAGCPHQVRNLKS 867 (935)
Q Consensus 838 GVepWtf~Q~lGEAVFIPAGCPHQVRNLkS 867 (935)
.|..-++.=..||+|+||+|.||+.+|..+
T Consensus 62 ~i~~~~~~l~~Gd~i~i~~~~~H~~~~~~~ 91 (125)
T 3cew_A 62 TIDGEKIELQAGDWLRIAPDGKRQISAASD 91 (125)
T ss_dssp EETTEEEEEETTEEEEECTTCCEEEEEBTT
T ss_pred EECCEEEEeCCCCEEEECCCCcEEEEcCCC
Confidence 344556777899999999999999999843
No 78
>3jzv_A Uncharacterized protein RRU_A2000; structural genomics, cupin-2 fold, unknown function, PSI-2, structure initiative; HET: MSE; 2.30A {Rhodospirillum rubrum}
Probab=81.78 E-value=0.57 Score=46.13 Aligned_cols=30 Identities=23% Similarity=0.008 Sum_probs=24.6
Q ss_pred CccceEEEeecCceeEecCCCccccccccc
Q 002330 838 GVEPWTFEQKLGEAVFIPAGCPHQVRNLKS 867 (935)
Q Consensus 838 GVepWtf~Q~lGEAVFIPAGCPHQVRNLkS 867 (935)
-|..=++.=..||+||||+|.||+++|...
T Consensus 87 ~v~g~~~~l~~GD~i~ip~g~~H~~~n~~~ 116 (166)
T 3jzv_A 87 MVGRAVSAVAPYDLVTIPGWSWHQFRAPAD 116 (166)
T ss_dssp EETTEEEEECTTCEEEECTTCCEEEECCTT
T ss_pred EECCEEEEeCCCCEEEECCCCcEEeEeCCC
Confidence 344456777889999999999999999754
No 79
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=81.65 E-value=0.89 Score=41.39 Aligned_cols=45 Identities=31% Similarity=0.709 Sum_probs=33.3
Q ss_pred CCcccccccCCCCceEecCcCCCCcccHhHHhhhCCCCChhhhhccCCCCCCc
Q 002330 201 RIKCHQCMKSERKYVVPCGKCRTKVYCIQCIKQWYPKMSELDVAEICPFCRRN 253 (935)
Q Consensus 201 ~~~CHQCrqk~~~~~v~C~~C~r~~FC~~CL~~rY~e~~~edv~w~CP~CRgi 253 (935)
...|.-|...-...++. .|+ ..||..||..|.... ...||.||..
T Consensus 15 ~~~C~iC~~~~~~p~~~--~Cg-H~fC~~Ci~~~~~~~-----~~~CP~Cr~~ 59 (115)
T 3l11_A 15 ECQCGICMEILVEPVTL--PCN-HTLCKPCFQSTVEKA-----SLCCPFCRRR 59 (115)
T ss_dssp HHBCTTTCSBCSSCEEC--TTS-CEECHHHHCCCCCTT-----TSBCTTTCCB
T ss_pred CCCCccCCcccCceeEc--CCC-CHHhHHHHHHHHhHC-----cCCCCCCCcc
Confidence 46788888665544443 799 999999999998531 3689999873
No 80
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=81.36 E-value=0.78 Score=38.39 Aligned_cols=46 Identities=17% Similarity=0.652 Sum_probs=30.9
Q ss_pred CCCcccccccCCC-CceEecCcCCCCcccHhHHhhhCCCCChhhhhccCCCCCC
Q 002330 200 ERIKCHQCMKSER-KYVVPCGKCRTKVYCIQCIKQWYPKMSELDVAEICPFCRR 252 (935)
Q Consensus 200 ~~~~CHQCrqk~~-~~~v~C~~C~r~~FC~~CL~~rY~e~~~edv~w~CP~CRg 252 (935)
....|--|...-. ...+.-..|+ ..||..||..|... ...||.||.
T Consensus 14 ~~~~C~IC~~~~~~~~~~~~~~C~-H~f~~~Ci~~~~~~------~~~CP~Cr~ 60 (74)
T 2ep4_A 14 LHELCAVCLEDFKPRDELGICPCK-HAFHRKCLIKWLEV------RKVCPLCNM 60 (74)
T ss_dssp CSCBCSSSCCBCCSSSCEEEETTT-EEEEHHHHHHHHHH------CSBCTTTCC
T ss_pred CCCCCcCCCcccCCCCcEEEcCCC-CEecHHHHHHHHHc------CCcCCCcCc
Confidence 3567888876642 1222222588 88999999999742 247999986
No 81
>1vj2_A Novel manganese-containing cupin TM1459; structural genomics, joint for structural genomics, JCSG; 1.65A {Thermotoga maritima} SCOP: b.82.1.10
Probab=81.30 E-value=0.62 Score=42.79 Aligned_cols=47 Identities=17% Similarity=0.145 Sum_probs=31.3
Q ss_pred cCCcccCccccCHHHHHHHHHHhCccceEEEeecCceeEecCCCccccccccc
Q 002330 815 IHPIHDQCFYLSSEHKKKLKEEFGVEPWTFEQKLGEAVFIPAGCPHQVRNLKS 867 (935)
Q Consensus 815 ~dPIHDQ~fYLt~ehk~rLkEEyGVepWtf~Q~lGEAVFIPAGCPHQVRNLkS 867 (935)
.|+ ..+-+|+..-.- ++-|..=++.=..||+|+||+|.||+.+|..+
T Consensus 65 ~H~-~~e~~~Vl~G~~-----~~~i~~~~~~l~~Gd~i~ip~g~~H~~~~~~~ 111 (126)
T 1vj2_A 65 SHP-WEHEIFVLKGKL-----TVLKEQGEETVEEGFYIFVEPNEIHGFRNDTD 111 (126)
T ss_dssp CCS-SCEEEEEEESEE-----EEECSSCEEEEETTEEEEECTTCCEEEECCSS
T ss_pred eCC-CcEEEEEEEeEE-----EEEECCEEEEECCCCEEEECCCCcEEeEeCCC
Confidence 444 445555543321 13344445666799999999999999999864
No 82
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=81.10 E-value=0.68 Score=42.82 Aligned_cols=47 Identities=21% Similarity=0.564 Sum_probs=34.6
Q ss_pred CCCcccccccCCCCceEecCcCCCCcccHhHHhhhCCCCChhhhhccCCCCCCcc
Q 002330 200 ERIKCHQCMKSERKYVVPCGKCRTKVYCIQCIKQWYPKMSELDVAEICPFCRRNC 254 (935)
Q Consensus 200 ~~~~CHQCrqk~~~~~v~C~~C~r~~FC~~CL~~rY~e~~~edv~w~CP~CRgiC 254 (935)
....|.-|...-...++ ..|+ ..||..||..|... -...||.||...
T Consensus 51 ~~~~C~IC~~~~~~p~~--~~Cg-H~fC~~Ci~~~~~~-----~~~~CP~Cr~~~ 97 (124)
T 3fl2_A 51 ETFQCICCQELVFRPIT--TVCQ-HNVCKDCLDRSFRA-----QVFSCPACRYDL 97 (124)
T ss_dssp HHTBCTTTSSBCSSEEE--CTTS-CEEEHHHHHHHHHT-----TCCBCTTTCCBC
T ss_pred cCCCCCcCChHHcCcEE--eeCC-CcccHHHHHHHHhH-----CcCCCCCCCccC
Confidence 45689999876554443 3799 99999999999852 234899999754
No 83
>4axo_A EUTQ, ethanolamine utilization protein; structural protein, bacterial microcompartment, BMC; 1.00A {Clostridium difficile}
Probab=80.88 E-value=0.71 Score=45.44 Aligned_cols=61 Identities=18% Similarity=0.186 Sum_probs=42.1
Q ss_pred cCCcccCccccCHHHHHHHHHHhCccceEEEeecCceeEecCCCccccccccccceecccccCccchH
Q 002330 815 IHPIHDQCFYLSSEHKKKLKEEFGVEPWTFEQKLGEAVFIPAGCPHQVRNLKSCTKVAVDFVSPENVD 882 (935)
Q Consensus 815 ~dPIHDQ~fYLt~ehk~rLkEEyGVepWtf~Q~lGEAVFIPAGCPHQVRNLkSCIKVAlDFVSPEnV~ 882 (935)
.|.=+++.+|+-+-.- ++-|..=++.=..||+||||+|.||..+|...|..+++ +.|-+..
T Consensus 80 ~~~~~eE~~yVLeG~~-----~l~i~g~~~~l~~GD~i~iP~G~~h~~~n~~~a~~l~V--~~P~~~~ 140 (151)
T 4axo_A 80 WTLNYDEIDYVIDGTL-----DIIIDGRKVSASSGELIFIPKGSKIQFSVPDYARFIYV--TYPADWA 140 (151)
T ss_dssp EECSSEEEEEEEEEEE-----EEEETTEEEEEETTCEEEECTTCEEEEEEEEEEEEEEE--EECSCC-
T ss_pred EeCCCcEEEEEEEeEE-----EEEECCEEEEEcCCCEEEECCCCEEEEEeCCCEEEEEE--ECCCCcc
Confidence 3444667777644321 12345557888899999999999999999988877776 4465443
No 84
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=80.67 E-value=1.2 Score=37.50 Aligned_cols=46 Identities=17% Similarity=0.410 Sum_probs=34.5
Q ss_pred CCCcccccccCCCCceEecCcCCCCcccHhHHhhhCCCCChhhhhccCCCCCCc
Q 002330 200 ERIKCHQCMKSERKYVVPCGKCRTKVYCIQCIKQWYPKMSELDVAEICPFCRRN 253 (935)
Q Consensus 200 ~~~~CHQCrqk~~~~~v~C~~C~r~~FC~~CL~~rY~e~~~edv~w~CP~CRgi 253 (935)
....|--|..--...++. .|+ ..||..||..|+.. -...||.||..
T Consensus 7 ~~~~C~IC~~~~~~Pv~~--~Cg-H~fc~~Ci~~~~~~-----~~~~CP~C~~~ 52 (78)
T 1t1h_A 7 EYFRCPISLELMKDPVIV--STG-QTYERSSIQKWLDA-----GHKTCPKSQET 52 (78)
T ss_dssp SSSSCTTTSCCCSSEEEE--TTT-EEEEHHHHHHHHTT-----TCCBCTTTCCB
T ss_pred ccCCCCCccccccCCEEc--CCC-CeecHHHHHHHHHH-----CcCCCCCCcCC
Confidence 456888888765554443 699 99999999999953 14589999864
No 85
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=80.65 E-value=0.82 Score=44.34 Aligned_cols=47 Identities=21% Similarity=0.634 Sum_probs=35.1
Q ss_pred CCcccccccCCCCceEecCcCCCCcccHhHHhhhCCCCChhhhhccCCCCCCcc
Q 002330 201 RIKCHQCMKSERKYVVPCGKCRTKVYCIQCIKQWYPKMSELDVAEICPFCRRNC 254 (935)
Q Consensus 201 ~~~CHQCrqk~~~~~v~C~~C~r~~FC~~CL~~rY~e~~~edv~w~CP~CRgiC 254 (935)
...|--|...-.. .+.+..|+ ..||..||..|... -...||.||...
T Consensus 54 ~~~C~IC~~~~~~-p~~~~~Cg-H~fC~~Ci~~~~~~-----~~~~CP~Cr~~~ 100 (165)
T 2ckl_B 54 ELMCPICLDMLKN-TMTTKECL-HRFCADCIITALRS-----GNKECPTCRKKL 100 (165)
T ss_dssp HHBCTTTSSBCSS-EEEETTTC-CEEEHHHHHHHHHT-----TCCBCTTTCCBC
T ss_pred CCCCcccChHhhC-cCEeCCCC-ChhHHHHHHHHHHh-----CcCCCCCCCCcC
Confidence 4589999755443 45566899 99999999999752 145799999854
No 86
>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A
Probab=80.53 E-value=1.2 Score=37.86 Aligned_cols=41 Identities=29% Similarity=0.682 Sum_probs=31.2
Q ss_pred CCCcccccccCCCCceEecCcCCCCc-ccHhHHhhhCCCCChhhhhccCCCCCCc
Q 002330 200 ERIKCHQCMKSERKYVVPCGKCRTKV-YCIQCIKQWYPKMSELDVAEICPFCRRN 253 (935)
Q Consensus 200 ~~~~CHQCrqk~~~~~v~C~~C~r~~-FC~~CL~~rY~e~~~edv~w~CP~CRgi 253 (935)
....|--|.......+. ..|+ .. ||..|+.+| ..||.||..
T Consensus 23 ~~~~C~iC~~~~~~~~~--~pCg-H~~~C~~C~~~~----------~~CP~Cr~~ 64 (74)
T 4ic3_A 23 EEKLCKICMDRNIAIVF--VPCG-HLVTCKQCAEAV----------DKCPMCYTV 64 (74)
T ss_dssp HHTBCTTTSSSBCCEEE--ETTC-CBCCCHHHHTTC----------SBCTTTCCB
T ss_pred cCCCCCCCCCCCCCEEE--cCCC-ChhHHHHhhhcC----------ccCCCcCcC
Confidence 35689999877654443 3688 66 999999987 689999963
No 87
>2lri_C Autoimmune regulator; Zn binding protein domain, apeced, transcription; NMR {Homo sapiens}
Probab=80.23 E-value=1.4 Score=37.64 Aligned_cols=49 Identities=16% Similarity=0.369 Sum_probs=36.8
Q ss_pred cCCCcccccccCCCCceEecCcCCCCcccHhHHhhhCCCCChhhhhccCCCCCC
Q 002330 199 LERIKCHQCMKSERKYVVPCGKCRTKVYCIQCIKQWYPKMSELDVAEICPFCRR 252 (935)
Q Consensus 199 ~~~~~CHQCrqk~~~~~v~C~~C~r~~FC~~CL~~rY~e~~~edv~w~CP~CRg 252 (935)
..+..|..|++. +.++.|-.|. ..|=..||.-.-..++ +-.|.||.|..
T Consensus 10 ~~~~~C~vC~~~--~~ll~Cd~C~-~~~H~~Cl~P~l~~~P--~g~W~C~~C~~ 58 (66)
T 2lri_C 10 APGARCGVCGDG--TDVLRCTHCA-AAFHWRCHFPAGTSRP--GTGLRCRSCSG 58 (66)
T ss_dssp CTTCCCTTTSCC--TTCEECSSSC-CEECHHHHCTTTCCCC--SSSCCCTTTTT
T ss_pred CCCCCcCCCCCC--CeEEECCCCC-CceecccCCCccCcCC--CCCEECccccC
Confidence 345679999865 4599999999 8999999975444433 23599999975
No 88
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=80.21 E-value=0.77 Score=41.21 Aligned_cols=48 Identities=21% Similarity=0.692 Sum_probs=34.1
Q ss_pred CCCcccccccCCCCceEecCcCCCCcccHhHHhhhCCCCChhhhhccCCCCCCc
Q 002330 200 ERIKCHQCMKSERKYVVPCGKCRTKVYCIQCIKQWYPKMSELDVAEICPFCRRN 253 (935)
Q Consensus 200 ~~~~CHQCrqk~~~~~v~C~~C~r~~FC~~CL~~rY~e~~~edv~w~CP~CRgi 253 (935)
....|--|...-...++ ..|+ ..||..||..|.... .....||.||..
T Consensus 20 ~~~~C~IC~~~~~~p~~--~~Cg-H~fC~~Ci~~~~~~~---~~~~~CP~Cr~~ 67 (112)
T 1jm7_A 20 KILECPICLELIKEPVS--TKCD-HIFCKFCMLKLLNQK---KGPSQCPLCKND 67 (112)
T ss_dssp HHTSCSSSCCCCSSCCB--CTTS-CCCCSHHHHHHHHSS---SSSCCCTTTSCC
T ss_pred CCCCCcccChhhcCeEE--CCCC-CHHHHHHHHHHHHhC---CCCCCCcCCCCc
Confidence 35678888765543333 4699 999999999998532 123589999874
No 89
>1x82_A Glucose-6-phosphate isomerase; cupin superfamily, hyperthermophIle, phosphoglucose isomerase, extremeophIle; HET: PA5; 1.50A {Pyrococcus furiosus} SCOP: b.82.1.7 PDB: 1x7n_A* 1x8e_A 1qxr_A* 1qxj_A* 1qy4_A* 2gc1_A* 2gc0_A* 2gc2_A* 2gc3_A* 3sxw_A 1j3q_A 1j3p_A 1j3r_A*
Probab=80.03 E-value=0.87 Score=45.44 Aligned_cols=40 Identities=13% Similarity=0.230 Sum_probs=30.9
Q ss_pred cceEEEeecCceeEecCCCccccccccccceecccccCcc
Q 002330 840 EPWTFEQKLGEAVFIPAGCPHQVRNLKSCTKVAVDFVSPE 879 (935)
Q Consensus 840 epWtf~Q~lGEAVFIPAGCPHQVRNLkSCIKVAlDFVSPE 879 (935)
+.+++.=..||+|+||+|.||+.+|.-+--=+.+.+++|.
T Consensus 117 ~~~~~~l~~GD~v~ip~g~~H~~~N~g~~~~~~l~v~~~~ 156 (190)
T 1x82_A 117 DAKWISMEPGTVVYVPPYWAHRTVNIGDEPFIFLAIYPAD 156 (190)
T ss_dssp CEEEEEECTTCEEEECTTCEEEEEECSSSCEEEEEEEETT
T ss_pred cEEEEEECCCcEEEECCCCeEEEEECCcccEEEEEEECCC
Confidence 4567888999999999999999999866433445555654
No 90
>2o8q_A Hypothetical protein; cpuin-like fold, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.55A {Burkholderia xenovorans}
Probab=79.83 E-value=0.9 Score=41.66 Aligned_cols=60 Identities=23% Similarity=0.324 Sum_probs=39.0
Q ss_pred cCCcccCccccCHHHHHHHHHHhCccc-eEEEeecCceeEecCCCccccccccccceecccccCccc
Q 002330 815 IHPIHDQCFYLSSEHKKKLKEEFGVEP-WTFEQKLGEAVFIPAGCPHQVRNLKSCTKVAVDFVSPEN 880 (935)
Q Consensus 815 ~dPIHDQ~fYLt~ehk~rLkEEyGVep-Wtf~Q~lGEAVFIPAGCPHQVRNLkSCIKVAlDFVSPEn 880 (935)
.|+-.++.+|+-.-.-. +-+.. -++.=..||+|+||+|.||..+|...-. ..+-+++|..
T Consensus 60 ~H~~~~E~~~vl~G~~~-----~~~~~~~~~~l~~Gd~~~ip~g~~H~~~~~~~~~-~~l~~~~p~~ 120 (134)
T 2o8q_A 60 THTVGFQLFYVLRGWVE-----FEYEDIGAVMLEAGGSAFQPPGVRHRELRHSDDL-EVLEIVSPAG 120 (134)
T ss_dssp EECCSCEEEEEEESEEE-----EEETTTEEEEEETTCEEECCTTCCEEEEEECTTC-EEEEEESSTT
T ss_pred ECCCCcEEEEEEeCEEE-----EEECCcEEEEecCCCEEEECCCCcEEeEeCCCCe-EEEEEECCCc
Confidence 45555666665433221 33344 5677889999999999999999965422 3344566654
No 91
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=79.65 E-value=0.39 Score=38.68 Aligned_cols=46 Identities=28% Similarity=0.799 Sum_probs=31.2
Q ss_pred CCcccccccCCC-----CceEecCcCCCCcccHhHHhhhCCCCChhhhhccCCCCCCc
Q 002330 201 RIKCHQCMKSER-----KYVVPCGKCRTKVYCIQCIKQWYPKMSELDVAEICPFCRRN 253 (935)
Q Consensus 201 ~~~CHQCrqk~~-----~~~v~C~~C~r~~FC~~CL~~rY~e~~~edv~w~CP~CRgi 253 (935)
...|--|...-. ...+....|+ ..||..||..|... ...||.||..
T Consensus 3 ~~~C~IC~~~~~~~~~~~~~~~~~~Cg-H~fc~~Ci~~~~~~------~~~CP~Cr~~ 53 (64)
T 2xeu_A 3 MVSCPICMDGYSEIVQNGRLIVSTECG-HVFCSQCLRDSLKN------ANTCPTCRKK 53 (64)
T ss_dssp CCBCTTTCCBHHHHHHTTCCEEEETTS-CEEEHHHHHHHHHH------CSBCTTTCCB
T ss_pred CCCCCccChhhhCccccCCCEEeCCCC-CchhHHHHHHHHHc------CCCCCCCCcc
Confidence 445666665321 1233455798 89999999999742 4589999874
No 92
>3lwc_A Uncharacterized protein; structural genomics, unknown function, joint center for STRU genomics, JCSG, protein structure initiative; HET: MSE; 1.40A {Rhizobium leguminosarum}
Probab=79.22 E-value=0.86 Score=42.34 Aligned_cols=37 Identities=22% Similarity=0.308 Sum_probs=26.9
Q ss_pred ceEEEeecCceeEecCCCccccccc-cccceecccccCcc
Q 002330 841 PWTFEQKLGEAVFIPAGCPHQVRNL-KSCTKVAVDFVSPE 879 (935)
Q Consensus 841 pWtf~Q~lGEAVFIPAGCPHQVRNL-kSCIKVAlDFVSPE 879 (935)
.=++.=..||+|+||||++|..+|. ..+. .+--++|-
T Consensus 76 g~~~~l~~GD~v~ip~g~~H~~~~~~~~~~--~l~v~~P~ 113 (119)
T 3lwc_A 76 GETVTAGPGEIVYMPKGETVTIRSHEEGAL--TAYVTYPH 113 (119)
T ss_dssp TEEEEECTTCEEEECTTCEEEEEEEEEEEE--EEEEEECC
T ss_pred CEEEEECCCCEEEECCCCEEEEEcCCCCeE--EEEEECCC
Confidence 3456678999999999999999997 3333 33345553
No 93
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=78.65 E-value=0.92 Score=43.99 Aligned_cols=48 Identities=21% Similarity=0.539 Sum_probs=35.5
Q ss_pred CCCcccccccCCCCceEecCcCCCCcccHhHHhhhCCCCChhhhhccCCCCCCccc
Q 002330 200 ERIKCHQCMKSERKYVVPCGKCRTKVYCIQCIKQWYPKMSELDVAEICPFCRRNCN 255 (935)
Q Consensus 200 ~~~~CHQCrqk~~~~~v~C~~C~r~~FC~~CL~~rY~e~~~edv~w~CP~CRgiCN 255 (935)
....|--|...-...++ ..|+ ..||..||..|... -...||.||....
T Consensus 77 ~~~~C~IC~~~~~~pv~--~~Cg-H~fC~~Ci~~~~~~-----~~~~CP~Cr~~~~ 124 (150)
T 1z6u_A 77 QSFMCVCCQELVYQPVT--TECF-HNVCKDCLQRSFKA-----QVFSCPACRHDLG 124 (150)
T ss_dssp HHTBCTTTSSBCSSEEE--CTTS-CEEEHHHHHHHHHT-----TCCBCTTTCCBCC
T ss_pred cCCEeecCChhhcCCEE--cCCC-CchhHHHHHHHHHh-----CCCcCCCCCccCC
Confidence 34689999876555444 5799 89999999999853 2247999988543
No 94
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=78.44 E-value=2.3 Score=38.94 Aligned_cols=45 Identities=24% Similarity=0.729 Sum_probs=33.7
Q ss_pred cCCCcccccccCCCCceEecCcCCCCcccHhHHhhhCCCCChhhhhccCCCCCCc
Q 002330 199 LERIKCHQCMKSERKYVVPCGKCRTKVYCIQCIKQWYPKMSELDVAEICPFCRRN 253 (935)
Q Consensus 199 ~~~~~CHQCrqk~~~~~v~C~~C~r~~FC~~CL~~rY~e~~~edv~w~CP~CRgi 253 (935)
.....|--|...-...++ -..|+ ..||..||..|.. ..||.||..
T Consensus 20 ~~~~~C~IC~~~~~~pv~-~~~Cg-H~fC~~Ci~~~~~--------~~CP~Cr~~ 64 (117)
T 1jm7_B 20 EKLLRCSRCTNILREPVC-LGGCE-HIFCSNCVSDCIG--------TGCPVCYTP 64 (117)
T ss_dssp HHTTSCSSSCSCCSSCBC-CCSSS-CCBCTTTGGGGTT--------TBCSSSCCB
T ss_pred hhCCCCCCCChHhhCccE-eCCCC-CHHHHHHHHHHhc--------CCCcCCCCc
Confidence 446789999765543332 22688 9999999999986 579999986
No 95
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=78.07 E-value=0.64 Score=37.95 Aligned_cols=46 Identities=28% Similarity=0.810 Sum_probs=31.7
Q ss_pred CCcccccccCCC-----CceEecCcCCCCcccHhHHhhhCCCCChhhhhccCCCCCCc
Q 002330 201 RIKCHQCMKSER-----KYVVPCGKCRTKVYCIQCIKQWYPKMSELDVAEICPFCRRN 253 (935)
Q Consensus 201 ~~~CHQCrqk~~-----~~~v~C~~C~r~~FC~~CL~~rY~e~~~edv~w~CP~CRgi 253 (935)
...|--|...-. ...+.-..|+ ..||..||..|... ...||.||..
T Consensus 15 ~~~C~IC~~~~~~~~~~~~~~~~~~Cg-H~fc~~Ci~~~~~~------~~~CP~Cr~~ 65 (69)
T 2ea6_A 15 TVSCPICMDGYSEIVQNGRLIVSTECG-HVFCSQCLRDSLKN------ANTCPTCRKK 65 (69)
T ss_dssp CCCCTTTCCCHHHHTTTTCCEEECSSS-CEEEHHHHHHHHHH------CSSCTTTCCC
T ss_pred CCCCcccCccccccccccCCeEeCCCC-ChhcHHHHHHHHHc------CCCCCCCCCc
Confidence 456777765421 1233445788 89999999999742 4589999864
No 96
>4i4a_A Similar to unknown protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE; 1.35A {Photorhabdus luminescens subsp}
Probab=78.03 E-value=1.9 Score=38.96 Aligned_cols=56 Identities=14% Similarity=0.192 Sum_probs=36.0
Q ss_pred hCccceEEEeecCceeEecCCCcccccccc--ccceecccccCccchHHHHHHHHHhhcCCc
Q 002330 837 FGVEPWTFEQKLGEAVFIPAGCPHQVRNLK--SCTKVAVDFVSPENVDECLRLTKEFRLLPK 896 (935)
Q Consensus 837 yGVepWtf~Q~lGEAVFIPAGCPHQVRNLk--SCIKVAlDFVSPEnV~eC~rLteEfR~Lp~ 896 (935)
+-|..=++.=..||+|+||+|.+|+++|.. .+.-+++ +++|+-+. .+..+...-|.
T Consensus 67 ~~i~~~~~~l~~Gd~~~i~~~~~H~~~~~~~~~~~~~~i-~f~~~~~~---~~~~~~~~~~~ 124 (128)
T 4i4a_A 67 IRINDEDFPVTKGDLIIIPLDSEHHVINNNQEDFHFYTI-WWDKESTL---NFLTRLEQDHH 124 (128)
T ss_dssp EEETTEEEEEETTCEEEECTTCCEEEEECSSSCEEEEEE-EECHHHHH---HHHHHHHHC--
T ss_pred EEECCEEEEECCCcEEEECCCCcEEeEeCCCCCEEEEEE-EECHHHHH---HHHHhcccccc
Confidence 345555777899999999999999999973 3333343 44555444 35555554443
No 97
>1wfl_A Zinc finger protein 216; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.80.1.1
Probab=77.96 E-value=1.8 Score=38.29 Aligned_cols=33 Identities=21% Similarity=0.564 Sum_probs=26.1
Q ss_pred CCcccccccCCCCceEecCcCCCCcccHhHHhhhCCCC
Q 002330 201 RIKCHQCMKSERKYVVPCGKCRTKVYCIQCIKQWYPKM 238 (935)
Q Consensus 201 ~~~CHQCrqk~~~~~v~C~~C~r~~FC~~CL~~rY~e~ 238 (935)
..+|..|+++---....|+ |+ ..||. .-||++.
T Consensus 25 ~nRC~~CrKkvgL~gf~Cr-Cg-~~FCs---~HRy~e~ 57 (74)
T 1wfl_A 25 KNRCFMCRKKVGLTGFDCR-CG-NLFCG---LHRYSDK 57 (74)
T ss_dssp TTBCSSSCCBCGGGCEECT-TS-CEECS---SSCSTTT
T ss_pred CCcChhhCCcccccCeecC-CC-CEech---hcCCCcc
Confidence 4689999998543468999 99 99975 6889865
No 98
>3bcw_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 1.60A {Bordetella bronchiseptica RB50}
Probab=77.63 E-value=0.83 Score=43.02 Aligned_cols=30 Identities=20% Similarity=0.313 Sum_probs=25.4
Q ss_pred EEeecCceeEecCCCccccccccccceecc
Q 002330 844 FEQKLGEAVFIPAGCPHQVRNLKSCTKVAV 873 (935)
Q Consensus 844 f~Q~lGEAVFIPAGCPHQVRNLkSCIKVAl 873 (935)
+.=..||+|+||+|.||..+|....-|+-+
T Consensus 89 ~~l~~GD~~~ip~g~~h~~~~~~~~rK~yv 118 (123)
T 3bcw_A 89 HAVKAGDAFIMPEGYTGRWEVDRHVKKIYF 118 (123)
T ss_dssp EEEETTCEEEECTTCCCEEEEEEEEEEEEE
T ss_pred EEECCCCEEEECCCCeEEEEECCceeEEEE
Confidence 445789999999999999999988777643
No 99
>2lbm_A Transcriptional regulator ATRX; metal binding protein-structural protein compl; HET: M3L; NMR {Homo sapiens} PDB: 2ld1_A
Probab=77.61 E-value=1 Score=44.23 Aligned_cols=52 Identities=17% Similarity=0.483 Sum_probs=40.5
Q ss_pred hccCCCcccccccCCCCceEecCcCCCCcccHhHHhhhCCCCCh-----hhhhccCCCCC
Q 002330 197 KELERIKCHQCMKSERKYVVPCGKCRTKVYCIQCIKQWYPKMSE-----LDVAEICPFCR 251 (935)
Q Consensus 197 ~k~~~~~CHQCrqk~~~~~v~C~~C~r~~FC~~CL~~rY~e~~~-----edv~w~CP~CR 251 (935)
..+....|-.|... +.++-|..|. ..||..||..-.+.-.. .+-.|.||.|+
T Consensus 59 ~Dg~~d~C~vC~~G--G~LlcCD~Cp-r~Fh~~Cl~p~l~~~~l~~i~~p~~~W~C~~C~ 115 (142)
T 2lbm_A 59 SDGMDEQCRWCAEG--GNLICCDFCH-NAFCKKCILRNLGRKELSTIMDENNQWYCYICH 115 (142)
T ss_dssp TTSCBCSCSSSCCC--SSEEECSSSC-CEEEHHHHHHHTCHHHHHHHHTSTTCCCCTTTC
T ss_pred CCCCCCeecccCCC--CcEEeCCCCC-CeeeHhhcCCCCChhhhhhcccCCCCCEeeccc
Confidence 35677899999976 4599999999 99999999977653211 23469999995
No 100
>2bnm_A Epoxidase; oxidoreductase, cupin, HTH, cation-dependant, zinc, fosfomycin; 1.7A {Streptomyces wedmorensis} SCOP: a.35.1.3 b.82.1.10 PDB: 1zz7_A 1zz8_A 1zz9_A 1zzb_A 1zz6_A 1zzc_A 2bnn_A 2bno_A 3scf_A 3scg_A 3sch_A
Probab=77.34 E-value=0.99 Score=44.17 Aligned_cols=45 Identities=11% Similarity=0.141 Sum_probs=32.2
Q ss_pred cCCcccCccccCHHHHHHHHHHhCccc----eEEEeecCceeEecCCCccccccc
Q 002330 815 IHPIHDQCFYLSSEHKKKLKEEFGVEP----WTFEQKLGEAVFIPAGCPHQVRNL 865 (935)
Q Consensus 815 ~dPIHDQ~fYLt~ehk~rLkEEyGVep----Wtf~Q~lGEAVFIPAGCPHQVRNL 865 (935)
.||- ++.+|+-.-.- ++.|.. =++.=..||+|+||+|.||+++|.
T Consensus 137 ~h~~-~E~~~Vl~G~~-----~~~~~~~~~~~~~~l~~GD~~~~~~~~~H~~~n~ 185 (198)
T 2bnm_A 137 GHAG-NEFLFVLEGEI-----HMKWGDKENPKEALLPTGASMFVEEHVPHAFTAA 185 (198)
T ss_dssp CCSS-CEEEEEEESCE-----EEEESCTTSCEEEEECTTCEEEECTTCCEEEEES
T ss_pred cCCC-eEEEEEEeeeE-----EEEECCcCCcccEEECCCCEEEeCCCCceEEEec
Confidence 4443 56666643322 244555 677888999999999999999998
No 101
>3rns_A Cupin 2 conserved barrel domain protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MSE; 2.07A {Leptotrichia buccalis}
Probab=77.29 E-value=0.87 Score=46.37 Aligned_cols=48 Identities=25% Similarity=0.356 Sum_probs=34.3
Q ss_pred cCCcccCccccCHHHHHHHHHHhCccceEEEeecCceeEecCCCcccccc-cccc
Q 002330 815 IHPIHDQCFYLSSEHKKKLKEEFGVEPWTFEQKLGEAVFIPAGCPHQVRN-LKSC 868 (935)
Q Consensus 815 ~dPIHDQ~fYLt~ehk~rLkEEyGVepWtf~Q~lGEAVFIPAGCPHQVRN-LkSC 868 (935)
.|| ++|.+|+-.-.- ++.|..=++.=..||+|+||||+||.++| ...|
T Consensus 170 ~H~-~~e~~~Vl~G~~-----~~~i~g~~~~l~~Gd~i~ip~~~~H~~~~~~~~~ 218 (227)
T 3rns_A 170 KAP-GDALVTVLDGEG-----KYYVDGKPFIVKKGESAVLPANIPHAVEAETENF 218 (227)
T ss_dssp CCS-SEEEEEEEEEEE-----EEEETTEEEEEETTEEEEECTTSCEEEECCSSCE
T ss_pred ECC-CcEEEEEEeEEE-----EEEECCEEEEECCCCEEEECCCCcEEEEeCCCCE
Confidence 566 566666644322 24445556777899999999999999999 7654
No 102
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=77.27 E-value=1.4 Score=36.05 Aligned_cols=47 Identities=19% Similarity=0.537 Sum_probs=30.9
Q ss_pred CCcccccccC---CCCceEecCcCCCCcccHhHHhhhCCCCChhhhhccCCCCCCc
Q 002330 201 RIKCHQCMKS---ERKYVVPCGKCRTKVYCIQCIKQWYPKMSELDVAEICPFCRRN 253 (935)
Q Consensus 201 ~~~CHQCrqk---~~~~~v~C~~C~r~~FC~~CL~~rY~e~~~edv~w~CP~CRgi 253 (935)
...|--|... +....+.=..|+ ..||..||.+|+... ...||.||..
T Consensus 3 ~~~C~IC~~~~~~~~~~~~~~~~Cg-H~fC~~Ci~~~~~~~-----~~~CP~Cr~~ 52 (65)
T 1g25_A 3 DQGCPRCKTTKYRNPSLKLMVNVCG-HTLCESCVDLLFVRG-----AGNCPECGTP 52 (65)
T ss_dssp TTCCSTTTTHHHHCSSCCEEECTTC-CCEEHHHHHHHHHTT-----SSSCTTTCCC
T ss_pred CCcCCcCCCCccCCCccCeecCCCC-CHhHHHHHHHHHHcC-----CCcCCCCCCc
Confidence 3567788761 221111224699 899999999997431 3579999874
No 103
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=76.84 E-value=1.1 Score=38.38 Aligned_cols=51 Identities=25% Similarity=0.557 Sum_probs=33.9
Q ss_pred CCCcccccccCCCC--ceEecCcCCCCcccHhHHhhhCCCCChhhhhccCCCCCCcc
Q 002330 200 ERIKCHQCMKSERK--YVVPCGKCRTKVYCIQCIKQWYPKMSELDVAEICPFCRRNC 254 (935)
Q Consensus 200 ~~~~CHQCrqk~~~--~~v~C~~C~r~~FC~~CL~~rY~e~~~edv~w~CP~CRgiC 254 (935)
....|--|...-.. ....-..|+ ..||..||.+|.... .....||.||..-
T Consensus 14 ~~~~C~IC~~~~~~~~~~~~~~~Cg-H~fC~~Ci~~~~~~~---~~~~~CP~Cr~~~ 66 (88)
T 2ct2_A 14 EVLECPICMESFTEEQLRPKLLHCG-HTICRQCLEKLLASS---INGVRCPFCSKIT 66 (88)
T ss_dssp SCCBCTTTCCBCCTTSSCEEECSSS-CEEEHHHHHHHHHHC---SSCBCCTTTCCCB
T ss_pred CCCCCccCCccccccCCCeEECCCC-ChhhHHHHHHHHHcC---CCCcCCCCCCCcc
Confidence 34678888765432 112223698 999999999997422 1246899998753
No 104
>3a1b_A DNA (cytosine-5)-methyltransferase 3A, histone H3; zinc-finger, histone binding, chromosomal protein, DNA damag repair, DNA-binding, methylation; HET: DNA; 2.29A {Homo sapiens} PDB: 3a1a_A*
Probab=76.41 E-value=1.8 Score=43.19 Aligned_cols=52 Identities=19% Similarity=0.559 Sum_probs=42.6
Q ss_pred ccCCCcccccccCCCCceEecC--cCCCCcccHhHHhhhCCCCChhhh----hccCCCCCC
Q 002330 198 ELERIKCHQCMKSERKYVVPCG--KCRTKVYCIQCIKQWYPKMSELDV----AEICPFCRR 252 (935)
Q Consensus 198 k~~~~~CHQCrqk~~~~~v~C~--~C~r~~FC~~CL~~rY~e~~~edv----~w~CP~CRg 252 (935)
+|....|.+|... +.++.|. +|. ..||..||....+.-+.+++ .|.|=.|.-
T Consensus 76 DG~~~yC~wC~~G--g~l~~Cdn~~C~-r~FC~~CI~~nvG~~~~~~i~~~d~W~Cy~C~P 133 (159)
T 3a1b_A 76 DGYQSYCTICCGG--REVLMCGNNNCC-RCFCVECVDLLVGPGAAQAAIKEDPWNCYMCGH 133 (159)
T ss_dssp TSSBSSCTTTSCC--SEEEECSSTTTC-CEEEHHHHHHHTCTTHHHHHHTSSSCCCTTTCS
T ss_pred CCCcceeeEecCC--CeEEeeCCCCCC-CchhHHHHHHhcCHhHHHHHhccCCCEEEecCC
Confidence 4667899999976 4699999 599 99999999999997666554 499988764
No 105
>1y3t_A Hypothetical protein YXAG; BI cupin, dioxygenase, oxidoreductase; 2.40A {Bacillus subtilis} SCOP: b.82.1.5 PDB: 2h0v_A*
Probab=76.40 E-value=1.1 Score=47.23 Aligned_cols=51 Identities=16% Similarity=0.183 Sum_probs=39.2
Q ss_pred hCccceEEEeecCceeEecCCCccccccccccceecccccCccchHHHHHHH
Q 002330 837 FGVEPWTFEQKLGEAVFIPAGCPHQVRNLKSCTKVAVDFVSPENVDECLRLT 888 (935)
Q Consensus 837 yGVepWtf~Q~lGEAVFIPAGCPHQVRNLkSCIKVAlDFVSPEnV~eC~rLt 888 (935)
+-|..-++.=..||.++||+|+||+.+|... --..+-+++|....+-++-.
T Consensus 252 ~~i~~~~~~l~~GD~~~ip~~~~H~~~n~~~-~~~~l~v~~~~~~~~~~~~~ 302 (337)
T 1y3t_A 252 MWTDGQEIQLNPGDFLHVPANTVHSYRLDSH-YTKMVGVLVPGLFEPFFRTL 302 (337)
T ss_dssp EEETTEEEEECTTCEEEECTTCCEEEEECSS-SEEEEEEEESSTTTHHHHHH
T ss_pred EEECCEEEEECCCCEEEECCCCeEEEEECCC-CeEEEEEEcCccHHHHHHHh
Confidence 3455567888999999999999999999976 34455667888887655443
No 106
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=76.32 E-value=2.4 Score=36.70 Aligned_cols=30 Identities=23% Similarity=0.840 Sum_probs=23.7
Q ss_pred ecCcCCCCcccHhHHhhhCCCCChhhhhccCCCCCCc
Q 002330 217 PCGKCRTKVYCIQCIKQWYPKMSELDVAEICPFCRRN 253 (935)
Q Consensus 217 ~C~~C~r~~FC~~CL~~rY~e~~~edv~w~CP~CRgi 253 (935)
.-..|+ ..|+..||.+|.... ..||.||..
T Consensus 44 ~~~~C~-H~FH~~Ci~~Wl~~~------~~CP~CR~~ 73 (81)
T 2ecl_A 44 VWGECN-HSFHNCCMSLWVKQN------NRCPLCQQD 73 (81)
T ss_dssp EEETTS-CEEEHHHHHHHTTTC------CBCTTTCCB
T ss_pred EeCCCC-CccChHHHHHHHHhC------CCCCCcCCC
Confidence 333698 999999999998643 389999964
No 107
>4h7l_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, cupin, unknown function; 2.45A {Planctomyces limnophilus}
Probab=75.97 E-value=0.42 Score=47.53 Aligned_cols=47 Identities=15% Similarity=0.208 Sum_probs=35.8
Q ss_pred cccCCcccCccccCH--HHHHHHHHHhCccceEEEeecCceeEecCCCcccccc
Q 002330 813 QVIHPIHDQCFYLSS--EHKKKLKEEFGVEPWTFEQKLGEAVFIPAGCPHQVRN 864 (935)
Q Consensus 813 ~v~dPIHDQ~fYLt~--ehk~rLkEEyGVepWtf~Q~lGEAVFIPAGCPHQVRN 864 (935)
...|+-+++.||+-. ..- ++-|..=++.=+.||+|+||+|.+|++.+
T Consensus 60 ~H~H~~~~E~~yVLe~~G~g-----~v~idge~~~l~~GD~v~IPpg~~H~i~g 108 (157)
T 4h7l_A 60 THYHREHQEIYVVLDHAAHA-----TIELNGQSYPLTKLLAISIPPLVRHRIVG 108 (157)
T ss_dssp CBBCSSCEEEEEEEEECTTC-----EEEETTEEEECCTTEEEEECTTCCEEEES
T ss_pred ceECCCCcEEEEEEecCcEE-----EEEECCEEEEeCCCCEEEECCCCeEeeEC
Confidence 346787888888754 322 24555667888999999999999999986
No 108
>1qwr_A Mannose-6-phosphate isomerase; structural genomics, D-mannose 6-phosphate, PSI, protein structure initiative; 1.80A {Bacillus subtilis} SCOP: b.82.1.3
Probab=75.97 E-value=0.91 Score=49.28 Aligned_cols=17 Identities=29% Similarity=0.651 Sum_probs=14.9
Q ss_pred eecCceeEecCCCcccc
Q 002330 846 QKLGEAVFIPAGCPHQV 862 (935)
Q Consensus 846 Q~lGEAVFIPAGCPHQV 862 (935)
=++|||+|||||.||=.
T Consensus 162 l~pGd~~~ipaGt~HA~ 178 (319)
T 1qwr_A 162 IKPGDFYYVPSGTLHAL 178 (319)
T ss_dssp CCTTCEEEECTTCCEEE
T ss_pred cCCCCEEEcCCCCceEe
Confidence 35899999999999974
No 109
>1fi2_A Oxalate oxidase, germin; beta-jellyroll, oxidoreductase; 1.60A {Hordeum vulgare} SCOP: b.82.1.2 PDB: 2et1_A 2ete_A* 2et7_A
Probab=75.83 E-value=1.7 Score=43.45 Aligned_cols=39 Identities=23% Similarity=0.261 Sum_probs=29.6
Q ss_pred eEEEeecCceeEecCCCccccccccccceecccccCccc
Q 002330 842 WTFEQKLGEAVFIPAGCPHQVRNLKSCTKVAVDFVSPEN 880 (935)
Q Consensus 842 Wtf~Q~lGEAVFIPAGCPHQVRNLkSCIKVAlDFVSPEn 880 (935)
.++.=..||+++||+|.+|.++|.-.---+.+-+.++.+
T Consensus 119 ~~~~l~~GD~~~iP~g~~H~~~N~g~~~~~~l~v~~~~~ 157 (201)
T 1fi2_A 119 YSRVVRAGETFVIPRGLMHFQFNVGKTEAYMVVSFNSQN 157 (201)
T ss_dssp EEEEEETTCEEEECTTCCEEEEECSSSCEEEEEEESSSC
T ss_pred EEEEECCCCEEEECCCCeEEEEeCCCCCEEEEEEECCCC
Confidence 366778899999999999999998654444555556554
No 110
>3i7d_A Sugar phosphate isomerase; YP_168127.1, structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; 2.30A {Ruegeria pomeroyi dss-3}
Probab=75.81 E-value=1.5 Score=42.44 Aligned_cols=59 Identities=15% Similarity=0.109 Sum_probs=38.0
Q ss_pred CCcccCccccCHHHHHHHHHHhCccceEEEeecCceeEecCC--CccccccccccceecccccCcc
Q 002330 816 HPIHDQCFYLSSEHKKKLKEEFGVEPWTFEQKLGEAVFIPAG--CPHQVRNLKSCTKVAVDFVSPE 879 (935)
Q Consensus 816 dPIHDQ~fYLt~ehk~rLkEEyGVepWtf~Q~lGEAVFIPAG--CPHQVRNLkSCIKVAlDFVSPE 879 (935)
|+-.++-+|+..-.- ++-|..=++.=..||+|+||+| .+|+++|.-+---+.+-+.+|-
T Consensus 62 H~~~eE~~~Vl~G~~-----~~~~~~~~~~l~~GD~i~ip~~~~~~H~~~n~~~~~~~~l~v~~p~ 122 (163)
T 3i7d_A 62 HMEQDEFVMVTEGAL-----VLVDDQGEHPMVPGDCAAFPAGDPNGHQFVNRTDAPATFLVVGTRT 122 (163)
T ss_dssp ESSCCEEEEEEESCE-----EEEETTEEEEECTTCEEEECTTCCCCBEEECCSSSCEEEEEEEECC
T ss_pred CCCCcEEEEEEECEE-----EEEECCEEEEeCCCCEEEECCCCCcceEEEECCCCCEEEEEEECCC
Confidence 333345555543322 1334445677789999999999 9999999866544455555553
No 111
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=75.66 E-value=0.63 Score=38.55 Aligned_cols=43 Identities=28% Similarity=0.836 Sum_probs=32.1
Q ss_pred CCCcccccccCCCCceEecCcCCCCcccHhHHhhhCCCCChhhhhccCCCCCC
Q 002330 200 ERIKCHQCMKSERKYVVPCGKCRTKVYCIQCIKQWYPKMSELDVAEICPFCRR 252 (935)
Q Consensus 200 ~~~~CHQCrqk~~~~~v~C~~C~r~~FC~~CL~~rY~e~~~edv~w~CP~CRg 252 (935)
....|--|...-.. .-..|+ ..||..||..|... ...||.||.
T Consensus 14 ~~~~C~IC~~~~~~---~~~~Cg-H~fc~~Ci~~~~~~------~~~CP~Cr~ 56 (70)
T 2ecn_A 14 DEEECCICMDGRAD---LILPCA-HSFCQKCIDKWSDR------HRNCPICRL 56 (70)
T ss_dssp CCCCCSSSCCSCCS---EEETTT-EEECHHHHHHSSCC------CSSCHHHHH
T ss_pred CCCCCeeCCcCccC---cccCCC-CcccHHHHHHHHHC------cCcCCCcCC
Confidence 45678888877655 223588 88999999999862 457998875
No 112
>1zx5_A Mannosephosphate isomerase, putative; STRU genomics, PSI, protein structure initiative, midwest center structural genomics, MCSG; HET: LFR; 2.30A {Archaeoglobus fulgidus} SCOP: b.82.1.3
Probab=75.15 E-value=0.99 Score=48.69 Aligned_cols=18 Identities=28% Similarity=0.370 Sum_probs=15.4
Q ss_pred EeecCceeEecCCCcccc
Q 002330 845 EQKLGEAVFIPAGCPHQV 862 (935)
Q Consensus 845 ~Q~lGEAVFIPAGCPHQV 862 (935)
.=++|||+|||||.||=.
T Consensus 161 ~l~pGd~~~ipaGt~HA~ 178 (300)
T 1zx5_A 161 ETTPYDTFVIRPGIPHAG 178 (300)
T ss_dssp ECCTTCEEEECTTCCEEE
T ss_pred ECCCCCEEEcCCCCceEc
Confidence 346899999999999964
No 113
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=75.14 E-value=0.94 Score=37.32 Aligned_cols=49 Identities=27% Similarity=0.733 Sum_probs=33.8
Q ss_pred cCCCcccccccCCC-----CceEecCcCCCCcccHhHHhhhCCCCChhhhhccCCCCCCcc
Q 002330 199 LERIKCHQCMKSER-----KYVVPCGKCRTKVYCIQCIKQWYPKMSELDVAEICPFCRRNC 254 (935)
Q Consensus 199 ~~~~~CHQCrqk~~-----~~~v~C~~C~r~~FC~~CL~~rY~e~~~edv~w~CP~CRgiC 254 (935)
.....|--|...-. +..+....|+ ..||..||..|... ...||.||..-
T Consensus 8 ~~~~~C~IC~~~~~~~~~~~~~~~~~~Cg-H~fc~~Ci~~~~~~------~~~CP~Cr~~~ 61 (71)
T 3ng2_A 8 SGTVSCPICMDGYSEIVQNGRLIVSTECG-HVFCSQCLRDSLKN------ANTCPTCRKKI 61 (71)
T ss_dssp TTCCBCTTTCCBHHHHHTTTCCEEECTTS-CEEEHHHHHHHHHH------CSBCTTTCCBC
T ss_pred CCCCCCcccChhhhccccccCCeEeCCCC-ChHhHHHHHHHHHc------CCCCCCCCCcc
Confidence 34567778875421 2234556799 89999999999742 24899998743
No 114
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*
Probab=75.01 E-value=2.2 Score=47.90 Aligned_cols=47 Identities=26% Similarity=0.767 Sum_probs=34.6
Q ss_pred CCCcccccccCCCCceEecCcCCCCcccHhHHhhhCCCCChhhhhccCCCCCCcc
Q 002330 200 ERIKCHQCMKSERKYVVPCGKCRTKVYCIQCIKQWYPKMSELDVAEICPFCRRNC 254 (935)
Q Consensus 200 ~~~~CHQCrqk~~~~~v~C~~C~r~~FC~~CL~~rY~e~~~edv~w~CP~CRgiC 254 (935)
....|.-|...-.. .....|+ ..||..||..|... ....||.||...
T Consensus 331 ~~~~C~ICle~~~~--pv~lpCG-H~FC~~Ci~~wl~~-----~~~~CP~CR~~i 377 (389)
T 2y1n_A 331 TFQLCKICAENDKD--VKIEPCG-HLMCTSCLTSWQES-----EGQGCPFCRCEI 377 (389)
T ss_dssp SSSBCTTTSSSBCC--EEEETTC-CEECHHHHHHHHHH-----TCSBCTTTCCBC
T ss_pred CCCCCCccCcCCCC--eEEeCCC-ChhhHHHHHHHHhc-----CCCCCCCCCCcc
Confidence 34789999876543 3345799 88999999998641 235899999753
No 115
>1wil_A KIAA1045 protein; ring finger domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: g.50.1.3
Probab=74.95 E-value=1.9 Score=39.18 Aligned_cols=53 Identities=19% Similarity=0.553 Sum_probs=42.2
Q ss_pred cCCCcccccccCCCCceEecCcCCCCcccHhHHhh-hCCCCC---------hhhhhccCCCCCC
Q 002330 199 LERIKCHQCMKSERKYVVPCGKCRTKVYCIQCIKQ-WYPKMS---------ELDVAEICPFCRR 252 (935)
Q Consensus 199 ~~~~~CHQCrqk~~~~~v~C~~C~r~~FC~~CL~~-rY~e~~---------~edv~w~CP~CRg 252 (935)
..-.+|-.|.+-+...+.+|+.|+ ..|=..||++ .|..-. .-+.-|.||.|-.
T Consensus 13 ~~D~~C~VC~~~t~~~l~pCRvC~-RvfH~~CL~r~gy~~~~~a~e~~l~A~T~~GWSC~~Cen 75 (89)
T 1wil_A 13 VNDEMCDVCEVWTAESLFPCRVCT-RVFHDGCLRRMGYIQGDSAAEVTEMAHTETGWSCHYCDN 75 (89)
T ss_dssp CCSCCCTTTCCCCSSCCSSCSSSS-SCCCHHHHHHHTSCCCCCCCSCSCCCSSSSSCCCTTTCC
T ss_pred CCCcccCccccccccceecccccc-ccccHhhcccccccccHHHHHHHHccCCCCCccccccch
Confidence 345789999999999999999999 8899999999 575332 1245699999954
No 116
>2f4p_A Hypothetical protein TM1010; double-stranded beta-helix fold, structural genomics, joint for structural genomics, JCSG; HET: UNL; 1.90A {Thermotoga maritima} SCOP: b.82.1.9
Probab=74.57 E-value=1.7 Score=41.33 Aligned_cols=35 Identities=20% Similarity=0.132 Sum_probs=25.7
Q ss_pred EEeecCceeEecCCCccccccccccceecccccCc
Q 002330 844 FEQKLGEAVFIPAGCPHQVRNLKSCTKVAVDFVSP 878 (935)
Q Consensus 844 f~Q~lGEAVFIPAGCPHQVRNLkSCIKVAlDFVSP 878 (935)
+.=..||+|+||+|.||+.+|....--+.+-++.|
T Consensus 89 ~~l~~Gd~i~ip~~~~H~~~n~~~~~~~~l~v~~~ 123 (147)
T 2f4p_A 89 RILKKGDVVEIPPNVVHWHGAAPDEELVHIGISTQ 123 (147)
T ss_dssp EEEETTCEEEECTTCCEEEEEBTTBCEEEEEEECC
T ss_pred EEECCCCEEEECCCCcEEeEeCCCCCEEEEEEEcc
Confidence 55679999999999999999986543333444443
No 117
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=73.87 E-value=2 Score=36.47 Aligned_cols=41 Identities=29% Similarity=0.682 Sum_probs=29.0
Q ss_pred CCCcccccccCCCCceEecCcCCCCc-ccHhHHhhhCCCCChhhhhccCCCCCCc
Q 002330 200 ERIKCHQCMKSERKYVVPCGKCRTKV-YCIQCIKQWYPKMSELDVAEICPFCRRN 253 (935)
Q Consensus 200 ~~~~CHQCrqk~~~~~v~C~~C~r~~-FC~~CL~~rY~e~~~edv~w~CP~CRgi 253 (935)
....|--|...-...++ ..|+ .. ||..|+.+. ..||.||..
T Consensus 24 ~~~~C~IC~~~~~~~~~--~pCg-H~~~C~~C~~~~----------~~CP~Cr~~ 65 (75)
T 2ecg_A 24 EEKLCKICMDRNIAIVF--VPCG-HLVTCKQCAEAV----------DKCPMCYTV 65 (75)
T ss_dssp HHHSCSSSCSSCCCBCC--SSSC-CCCBCHHHHHHC----------SBCTTTCCB
T ss_pred CCCCCCcCCCCCCCEEE--ecCC-CHHHHHHHhhCC----------CCCccCCce
Confidence 34579899876554332 4688 66 999999642 589999973
No 118
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=73.22 E-value=1.5 Score=38.10 Aligned_cols=48 Identities=27% Similarity=0.615 Sum_probs=34.1
Q ss_pred CCCcccccccCCCCceEecCcCCCCcccHhHHhhhCCCCChhhhhccCCCCCCc
Q 002330 200 ERIKCHQCMKSERKYVVPCGKCRTKVYCIQCIKQWYPKMSELDVAEICPFCRRN 253 (935)
Q Consensus 200 ~~~~CHQCrqk~~~~~v~C~~C~r~~FC~~CL~~rY~e~~~edv~w~CP~CRgi 253 (935)
....|.-|...-...++ -..|+ ..||..||..|+... -...||.||..
T Consensus 12 ~~~~C~IC~~~~~~p~~-~~~Cg-H~fC~~Ci~~~~~~~----~~~~CP~Cr~~ 59 (92)
T 3ztg_A 12 DELLCLICKDIMTDAVV-IPCCG-NSYCDECIRTALLES----DEHTCPTCHQN 59 (92)
T ss_dssp TTTEETTTTEECSSCEE-CTTTC-CEECHHHHHHHHHHC----TTCCCTTTCCS
T ss_pred cCCCCCCCChhhcCceE-CCCCC-CHHHHHHHHHHHHhc----CCCcCcCCCCc
Confidence 45789999865554343 33499 999999999997421 13589999874
No 119
>3o36_A Transcription intermediary factor 1-alpha; TRIM24, PHD finger, bromodomain, H4K16 acetylation, breast C transcription-protein binding complex; HET: ALY; 1.70A {Homo sapiens} PDB: 3o33_A* 3o34_A* 3o35_A* 3o37_A
Probab=72.34 E-value=5 Score=39.86 Aligned_cols=49 Identities=27% Similarity=0.577 Sum_probs=36.4
Q ss_pred CCCcccccccCCCCceEecCcCCCCcccHhHHhhhCCCCChhhhhccCCCCCCc
Q 002330 200 ERIKCHQCMKSERKYVVPCGKCRTKVYCIQCIKQWYPKMSELDVAEICPFCRRN 253 (935)
Q Consensus 200 ~~~~CHQCrqk~~~~~v~C~~C~r~~FC~~CL~~rY~e~~~edv~w~CP~CRgi 253 (935)
+...|..|++. +.++.|-.|. ..|-..|+..-....+ +-.|.||.|+..
T Consensus 3 ~~~~C~~C~~~--g~ll~Cd~C~-~~~H~~C~~p~l~~~p--~~~W~C~~C~~~ 51 (184)
T 3o36_A 3 NEDWCAVCQNG--GELLCCEKCP-KVFHLSCHVPTLTNFP--SGEWICTFCRDL 51 (184)
T ss_dssp SCSSCTTTCCC--SSCEECSSSS-CEECTTTSSSCCSSCC--SSCCCCTTTSCS
T ss_pred CCCccccCCCC--CeeeecCCCC-cccCccccCCCCCCCC--CCCEECccccCc
Confidence 34679999866 5599999999 8888889865443332 235999999863
No 120
>2pv0_B DNA (cytosine-5)-methyltransferase 3-like; DNMT3L, unmethylated H3K4, de novo DNA methylation, transferase regulator; HET: DNA; 3.30A {Homo sapiens} PDB: 2pvc_B*
Probab=71.79 E-value=2.6 Score=47.38 Aligned_cols=52 Identities=23% Similarity=0.624 Sum_probs=42.2
Q ss_pred ccCCCcccccccCCCCceEecC--cCCCCcccHhHHhhhCCCCChhhh----hccCCCCCC
Q 002330 198 ELERIKCHQCMKSERKYVVPCG--KCRTKVYCIQCIKQWYPKMSELDV----AEICPFCRR 252 (935)
Q Consensus 198 k~~~~~CHQCrqk~~~~~v~C~--~C~r~~FC~~CL~~rY~e~~~edv----~w~CP~CRg 252 (935)
.+....|.+|.... .++.|. +|. ..||..||.+..+.-..+++ .|.|=.|.-
T Consensus 90 DG~~~yCr~C~~Gg--~l~~Cdn~~C~-r~FC~~Ci~~n~g~~~~~~i~~~d~W~Cf~C~p 147 (386)
T 2pv0_B 90 DGYQSYCSICCSGE--TLLICGNPDCT-RCYCFECVDSLVGPGTSGKVHAMSNWVCYLCLP 147 (386)
T ss_dssp SSSBCSCTTTCCCS--SCEECCSTTCC-CEECHHHHHHHTCTTHHHHHHHCSSCCCTTTSS
T ss_pred CCCcccceEcCCCC--eEEEeCCCCCC-cchHHHHHHHhcChhHHHHhhccCCceEEEcCC
Confidence 46678999999764 599999 799 99999999999987665543 499988764
No 121
>1o4t_A Putative oxalate decarboxylase; double-stranded beta-helix fold, structural genomics, joint for structural genomics, JCSG; 1.95A {Thermotoga maritima} SCOP: b.82.1.9
Probab=71.74 E-value=1.4 Score=41.02 Aligned_cols=31 Identities=23% Similarity=0.328 Sum_probs=25.4
Q ss_pred hCccceEEEeecCceeEecCCCccccccccc
Q 002330 837 FGVEPWTFEQKLGEAVFIPAGCPHQVRNLKS 867 (935)
Q Consensus 837 yGVepWtf~Q~lGEAVFIPAGCPHQVRNLkS 867 (935)
+-|..-++.=..||+++||+|.||+.+|.-.
T Consensus 91 ~~i~~~~~~l~~Gd~i~i~~~~~H~~~n~~~ 121 (133)
T 1o4t_A 91 FHDNGKDVPIKAGDVCFTDSGESHSIENTGN 121 (133)
T ss_dssp EEETTEEEEEETTEEEEECTTCEEEEECCSS
T ss_pred EEECCEEEEeCCCcEEEECCCCcEEeEECCC
Confidence 3445566777899999999999999999754
No 122
>2vqa_A SLL1358 protein, MNCA; periplasmic binding protein, metal-binding protein, cupin, BI-cupin, oxalate decarboxylase; 2.95A {Synechocystis SP}
Probab=70.52 E-value=1.4 Score=47.27 Aligned_cols=55 Identities=16% Similarity=0.232 Sum_probs=35.8
Q ss_pred EEEeecCceeEecCCCccccccccccceecccccCccchHHHHHHHHHhhcCCccc
Q 002330 843 TFEQKLGEAVFIPAGCPHQVRNLKSCTKVAVDFVSPENVDECLRLTKEFRLLPKNH 898 (935)
Q Consensus 843 tf~Q~lGEAVFIPAGCPHQVRNLkSCIKVAlDFVSPEnV~eC~rLteEfR~Lp~~H 898 (935)
++.=..||+++||+|+||+++|.-+--=+.+-|++|.+... +.|+.=++.+|.+-
T Consensus 279 ~~~l~~GD~~~ip~~~~H~~~n~~~~~~~~l~~~~~~~~~~-~~~~~~~~~~~~~v 333 (361)
T 2vqa_A 279 VSRLQQGDVGYVPKGYGHAIRNSSQKPLDIVVVFNDGDYQS-IDLSTWLASNPSSV 333 (361)
T ss_dssp EEEECTTCEEEECTTCEEEEECCSSSCEEEEEEESSSSCCC-EEHHHHHHTSCHHH
T ss_pred EEEECCCCEEEECCCCeEEeEECCCCCEEEEEEECCCCcce-eeHHHHhhhCCHHH
Confidence 56667899999999999999998653334455556554322 12344566666543
No 123
>3rns_A Cupin 2 conserved barrel domain protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MSE; 2.07A {Leptotrichia buccalis}
Probab=70.31 E-value=1.5 Score=44.66 Aligned_cols=55 Identities=11% Similarity=0.065 Sum_probs=39.7
Q ss_pred cccCCcccCccccCHHHHHHHHHHhCccceEEEeecCceeEecCCCccccccccccceecc
Q 002330 813 QVIHPIHDQCFYLSSEHKKKLKEEFGVEPWTFEQKLGEAVFIPAGCPHQVRNLKSCTKVAV 873 (935)
Q Consensus 813 ~v~dPIHDQ~fYLt~ehk~rLkEEyGVepWtf~Q~lGEAVFIPAGCPHQVRNLkSCIKVAl 873 (935)
...|| +++.+|+-.--- ++.|..=++.=..||.++||||.||-++|+..|+=+..
T Consensus 52 ~h~h~-~~~~~~Vl~G~~-----~~~i~~~~~~l~~Gd~~~~p~~~~H~~~a~~~~~~l~i 106 (227)
T 3rns_A 52 AEAML-GNRYYYCFNGNG-----EIFIENNKKTISNGDFLEITANHNYSIEARDNLKLIEI 106 (227)
T ss_dssp ECSCS-SCEEEEEEESEE-----EEEESSCEEEEETTEEEEECSSCCEEEEESSSEEEEEE
T ss_pred ccccC-CCEEEEEEeCEE-----EEEECCEEEEECCCCEEEECCCCCEEEEECCCcEEEEE
Confidence 44677 788777643321 23445556667789999999999999999998766544
No 124
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=70.09 E-value=1.8 Score=39.42 Aligned_cols=45 Identities=29% Similarity=0.682 Sum_probs=33.7
Q ss_pred CCcccccccCCCCceEecCcCCCCcccHhHHhhhCCCCChhhhhccCCCCCCc
Q 002330 201 RIKCHQCMKSERKYVVPCGKCRTKVYCIQCIKQWYPKMSELDVAEICPFCRRN 253 (935)
Q Consensus 201 ~~~CHQCrqk~~~~~v~C~~C~r~~FC~~CL~~rY~e~~~edv~w~CP~CRgi 253 (935)
...|--|...-...++ ..|+ ..||..||..|.... ...||.||..
T Consensus 23 ~~~C~IC~~~~~~p~~--~~Cg-H~fC~~Ci~~~~~~~-----~~~CP~Cr~~ 67 (116)
T 1rmd_A 23 SISCQICEHILADPVE--TSCK-HLFCRICILRCLKVM-----GSYCPSCRYP 67 (116)
T ss_dssp HTBCTTTCSBCSSEEE--CTTS-CEEEHHHHHHHHHHT-----CSBCTTTCCB
T ss_pred CCCCCCCCcHhcCcEE--cCCC-CcccHHHHHHHHhHC-----cCcCCCCCCC
Confidence 5678889766554444 5799 999999999998531 3479999873
No 125
>1rc6_A Hypothetical protein YLBA; structural genomics, NYSGXRC, SGX clone NAME 3174C1TCT3B1, T T1521, PSI, protein initiative; 2.60A {Escherichia coli} SCOP: b.82.1.11
Probab=69.96 E-value=1.4 Score=45.74 Aligned_cols=48 Identities=13% Similarity=0.149 Sum_probs=32.3
Q ss_pred cCCcccCccccCHHHHHHHHHHhCccceEEEeecCceeEecCCCccccccccc
Q 002330 815 IHPIHDQCFYLSSEHKKKLKEEFGVEPWTFEQKLGEAVFIPAGCPHQVRNLKS 867 (935)
Q Consensus 815 ~dPIHDQ~fYLt~ehk~rLkEEyGVepWtf~Q~lGEAVFIPAGCPHQVRNLkS 867 (935)
.|+-.++-+|+-.-.- ++.|..=++.=..||+||||+|+||+.+|.-.
T Consensus 196 ~H~~~~E~~~Vl~G~~-----~~~i~~~~~~l~~GD~i~~~~~~~H~~~n~g~ 243 (261)
T 1rc6_A 196 ETHVQEHGAYILSGQG-----VYNLDNNWIPVKKGDYIFMGAYSLQAGYGVGR 243 (261)
T ss_dssp EEESSCEEEEEEESEE-----EEESSSCEEEEETTCEEEECSSEEEEEEEC--
T ss_pred cCCCceEEEEEEEeEE-----EEEECCEEEEeCCCCEEEECCCCcEEeEeCCC
Confidence 3444455556533221 24555667788899999999999999999854
No 126
>2wfp_A Mannose-6-phosphate isomerase; APO-structure, metal-binding; 1.67A {Salmonella typhimurium} PDB: 3h1w_A 3h1m_A 3h1y_A*
Probab=69.81 E-value=1.5 Score=48.98 Aligned_cols=15 Identities=47% Similarity=0.738 Sum_probs=14.3
Q ss_pred ecCceeEecCCCccc
Q 002330 847 KLGEAVFIPAGCPHQ 861 (935)
Q Consensus 847 ~lGEAVFIPAGCPHQ 861 (935)
++|||+|||||.||=
T Consensus 245 ~pGd~~fipAG~~HA 259 (394)
T 2wfp_A 245 NPGEAMFLFAETPHA 259 (394)
T ss_dssp CTTCEEEECTTCCEE
T ss_pred CCCCEEEcCCCCceE
Confidence 789999999999996
No 127
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=69.37 E-value=1.7 Score=39.23 Aligned_cols=38 Identities=24% Similarity=0.469 Sum_probs=26.2
Q ss_pred eEecCcCCCCcccHhHHhhhCCCCChhhhhccCCCCCCcc
Q 002330 215 VVPCGKCRTKVYCIQCIKQWYPKMSELDVAEICPFCRRNC 254 (935)
Q Consensus 215 ~v~C~~C~r~~FC~~CL~~rY~e~~~edv~w~CP~CRgiC 254 (935)
++.-..|+ ..||..||..|...-. ......||.||..-
T Consensus 55 ~~~~~~C~-H~Fh~~Ci~~wl~~~~-~~~~~~CP~CR~~~ 92 (114)
T 1v87_A 55 VGRLTKCS-HAFHLLCLLAMYCNGN-KDGSLQCPSCKTIY 92 (114)
T ss_dssp CEEESSSC-CEECHHHHHHHHHHTC-CSSCCBCTTTCCBS
T ss_pred ceecCCCC-CcccHHHHHHHHHccc-CCCCCcCCCCCCcc
Confidence 34456798 9999999999982100 02346899999753
No 128
>2pyt_A Ethanolamine utilization protein EUTQ; structural genomics, joint center for structural genomics, J protein structure initiative; 1.90A {Salmonella typhimurium LT2} SCOP: b.82.1.24
Probab=68.86 E-value=2.3 Score=40.34 Aligned_cols=35 Identities=29% Similarity=0.323 Sum_probs=28.2
Q ss_pred ccceEEEeecCceeEecCCCccccccccccceecc
Q 002330 839 VEPWTFEQKLGEAVFIPAGCPHQVRNLKSCTKVAV 873 (935)
Q Consensus 839 VepWtf~Q~lGEAVFIPAGCPHQVRNLkSCIKVAl 873 (935)
+..=++.=+.||++|||+|.||..+|...+.++.+
T Consensus 90 ~~g~~~~l~~GD~i~~p~g~~h~~~~~~~~~~l~v 124 (133)
T 2pyt_A 90 HEGETMIAKAGDVMFIPKGSSIEFGTPTSVRFLYV 124 (133)
T ss_dssp ETTEEEEEETTCEEEECTTCEEEEEEEEEEEEEEE
T ss_pred ECCEEEEECCCcEEEECCCCEEEEEeCCCEEEEEE
Confidence 34456677899999999999999999877766654
No 129
>1y3t_A Hypothetical protein YXAG; BI cupin, dioxygenase, oxidoreductase; 2.40A {Bacillus subtilis} SCOP: b.82.1.5 PDB: 2h0v_A*
Probab=68.75 E-value=2 Score=45.18 Aligned_cols=49 Identities=22% Similarity=0.274 Sum_probs=35.5
Q ss_pred hCccceEEEeecCceeEecCCCccccccccccceecccccCccchHHHHH
Q 002330 837 FGVEPWTFEQKLGEAVFIPAGCPHQVRNLKSCTKVAVDFVSPENVDECLR 886 (935)
Q Consensus 837 yGVepWtf~Q~lGEAVFIPAGCPHQVRNLkSCIKVAlDFVSPEnV~eC~r 886 (935)
+.|..-++.=..||.|+||+|.||..+|...- -..+.+++|....+-+.
T Consensus 80 ~~~~~~~~~l~~Gd~~~~p~~~~H~~~n~~~~-~~~~~~~~p~~~~~~~~ 128 (337)
T 1y3t_A 80 LTLDGERYLLISGDYANIPAGTPHSYRMQSHR-TRLVSYTMKGNVAHLYS 128 (337)
T ss_dssp EEETTEEEEECTTCEEEECTTCCEEEEECSTT-EEEEEEEETTSSTHHHH
T ss_pred EEECCEEEEECCCCEEEECCCCcEEEEECCCC-eEEEEEECCCCHHHHHH
Confidence 33455667788999999999999999998762 23445566766666443
No 130
>2l5u_A Chromodomain-helicase-DNA-binding protein 4; CHD4, MI2B, MI2-beta, PHD, protein binding, peptide binding metal binding protein; NMR {Homo sapiens}
Probab=68.58 E-value=3 Score=34.83 Aligned_cols=49 Identities=20% Similarity=0.583 Sum_probs=37.6
Q ss_pred cCCCcccccccCCCCceEecCcCCCCcccHhHHhhhCCCCChhhhhccCCCCCC
Q 002330 199 LERIKCHQCMKSERKYVVPCGKCRTKVYCIQCIKQWYPKMSELDVAEICPFCRR 252 (935)
Q Consensus 199 ~~~~~CHQCrqk~~~~~v~C~~C~r~~FC~~CL~~rY~e~~~edv~w~CP~CRg 252 (935)
.....|..|++. +.++.|-.|. ..|=..||.--...++ +-.|.||.|..
T Consensus 9 ~~~~~C~vC~~~--g~ll~CD~C~-~~fH~~Cl~p~l~~~p--~g~W~C~~C~~ 57 (61)
T 2l5u_A 9 DHQDYCEVCQQG--GEIILCDTCP-RAYHMVCLDPDMEKAP--EGKWSCPHCEK 57 (61)
T ss_dssp CCCSSCTTTSCC--SSEEECSSSS-CEEEHHHHCTTCCSCC--CSSCCCTTGGG
T ss_pred CCCCCCccCCCC--CcEEECCCCC-hhhhhhccCCCCCCCC--CCceECccccc
Confidence 456789999875 5799999999 6999999986443332 34799999964
No 131
>3u5n_A E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, bromodomain, TGF-beta, epigenetics, methylation, K9ME3, K14AC, transcription; HET: M3L ALY; 1.95A {Homo sapiens} PDB: 3u5m_A* 3u5o_A* 3u5p_A*
Probab=68.55 E-value=4.3 Score=41.15 Aligned_cols=50 Identities=26% Similarity=0.527 Sum_probs=37.4
Q ss_pred cCCCcccccccCCCCceEecCcCCCCcccHhHHhhhCCCCChhhhhccCCCCCCc
Q 002330 199 LERIKCHQCMKSERKYVVPCGKCRTKVYCIQCIKQWYPKMSELDVAEICPFCRRN 253 (935)
Q Consensus 199 ~~~~~CHQCrqk~~~~~v~C~~C~r~~FC~~CL~~rY~e~~~edv~w~CP~CRgi 253 (935)
.+...|..|++. +.++.|-.|. ..|-..||..-....+ +-.|.||.|+..
T Consensus 5 ~~~~~C~~C~~~--g~ll~Cd~C~-~~~H~~Cl~p~l~~~p--~~~W~C~~C~~~ 54 (207)
T 3u5n_A 5 PNEDWCAVCQNG--GDLLCCEKCP-KVFHLTCHVPTLLSFP--SGDWICTFCRDI 54 (207)
T ss_dssp SSCSSBTTTCCC--EEEEECSSSS-CEECTTTSSSCCSSCC--SSCCCCTTTSCS
T ss_pred CCCCCCCCCCCC--CceEEcCCCC-CccCCccCCCCCCCCC--CCCEEeCceeCc
Confidence 456779999866 4699999999 8898999865443332 235999999863
No 132
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=68.50 E-value=2.8 Score=36.57 Aligned_cols=48 Identities=25% Similarity=0.679 Sum_probs=32.1
Q ss_pred CCcccccccCCC---CceEecCcCCCCcccHhHHhhhCCCCChhhhhccCCCCCCccc
Q 002330 201 RIKCHQCMKSER---KYVVPCGKCRTKVYCIQCIKQWYPKMSELDVAEICPFCRRNCN 255 (935)
Q Consensus 201 ~~~CHQCrqk~~---~~~v~C~~C~r~~FC~~CL~~rY~e~~~edv~w~CP~CRgiCN 255 (935)
...|--|...-. -....| .|+ ..||..||.+...+ ....||.||..-.
T Consensus 11 ~~~CpICle~~~~~d~~~~p~-~CG-H~fC~~Cl~~~~~~-----~~~~CP~CR~~~~ 61 (78)
T 1e4u_A 11 PVECPLCMEPLEIDDINFFPC-TCG-YQICRFCWHRIRTD-----ENGLCPACRKPYP 61 (78)
T ss_dssp CCBCTTTCCBCCTTTTTCCSS-TTS-CCCCHHHHHHHTTS-----SCSBCTTTCCBCS
T ss_pred CCcCCccCccCcccccccccc-CCC-CCcCHHHHHHHHhc-----CCCCCCCCCCccC
Confidence 456777776431 112334 588 89999999988643 3468999998543
No 133
>1wfp_A Zinc finger (AN1-like) family protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: g.80.1.1
Probab=68.42 E-value=5.5 Score=35.27 Aligned_cols=34 Identities=24% Similarity=0.641 Sum_probs=26.7
Q ss_pred CCCcccccccCCCCceEecCcCCCCcccHhHHhhhCCCC
Q 002330 200 ERIKCHQCMKSERKYVVPCGKCRTKVYCIQCIKQWYPKM 238 (935)
Q Consensus 200 ~~~~CHQCrqk~~~~~v~C~~C~r~~FC~~CL~~rY~e~ 238 (935)
...+|+.|+++.--....| .|+ ..||. .-||++.
T Consensus 24 ~~~RC~~C~kkvgL~~f~C-rCg-~~FCs---~HRy~e~ 57 (74)
T 1wfp_A 24 TATRCLSCNKKVGVTGFKC-RCG-STFCG---THRYPES 57 (74)
T ss_dssp CCCBCSSSCCBCTTTCEEC-TTS-CEECT---TTCSTTT
T ss_pred cCccchhhcCcccccceEe-ccC-CEecc---ccCCCcC
Confidence 3478999999875457899 699 99975 6788865
No 134
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=68.27 E-value=3.1 Score=37.78 Aligned_cols=48 Identities=27% Similarity=0.735 Sum_probs=33.0
Q ss_pred cCCCcccccccCCC-----CceEecCcCCCCcccHhHHhhhCCCCChhhhhccCCCCCCc
Q 002330 199 LERIKCHQCMKSER-----KYVVPCGKCRTKVYCIQCIKQWYPKMSELDVAEICPFCRRN 253 (935)
Q Consensus 199 ~~~~~CHQCrqk~~-----~~~v~C~~C~r~~FC~~CL~~rY~e~~~edv~w~CP~CRgi 253 (935)
.....|--|...-. +.......|+ ..||..||.+|.. ....||.||..
T Consensus 70 ~~~~~C~iC~~~~~~~~~~~~~~~~~~Cg-H~fc~~Ci~~~~~------~~~~CP~Cr~~ 122 (133)
T 4ap4_A 70 SGTVSCPICMDGYSEIVQNGRLIVSTECG-HVFCSQCLRDSLK------NANTCPTCRKK 122 (133)
T ss_dssp SSSCBCTTTCCBHHHHHHTTCCEEEETTS-BEEEHHHHHHHHH------HCSBCTTTCCB
T ss_pred CCCCCCCCCCCccccccccCcceEeCCCC-ChhhHHHHHHHHH------cCCCCCCCCCc
Confidence 45667777765321 1223455788 9999999999963 24589999963
No 135
>3h7j_A Bacilysin biosynthesis protein BACB; YWFC, bacilysin synthesis, anticapsin synthesis, BI-Cu double stranded beta helix, antibiotic biosynthesis; HET: PPY; 1.87A {Bacillus subtilis} PDB: 3h7y_A* 3h9a_A*
Probab=67.97 E-value=2.1 Score=43.98 Aligned_cols=48 Identities=23% Similarity=0.147 Sum_probs=34.1
Q ss_pred ccCCcccCccccCHHHHHHHHHHhCccceEEEeecCceeE-ecCCCccccccccc
Q 002330 814 VIHPIHDQCFYLSSEHKKKLKEEFGVEPWTFEQKLGEAVF-IPAGCPHQVRNLKS 867 (935)
Q Consensus 814 v~dPIHDQ~fYLt~ehk~rLkEEyGVepWtf~Q~lGEAVF-IPAGCPHQVRNLkS 867 (935)
..|| +.|-+|+-.--- ++-|..=++.=..||+|| ||+|.||+++|..+
T Consensus 50 H~H~-~~e~~~Vl~G~~-----~~~~~~~~~~l~~Gd~i~~ip~~~~H~~~n~~~ 98 (243)
T 3h7j_A 50 HQHK-EVQIGMVVSGEL-----MMTVGDVTRKMTALESAYIAPPHVPHGARNDTD 98 (243)
T ss_dssp ECCS-SEEEEEEEESEE-----EEEETTEEEEEETTTCEEEECTTCCEEEEECSS
T ss_pred EECC-CcEEEEEEEeEE-----EEEECCEEEEECCCCEEEEcCCCCcEeeEeCCC
Confidence 3566 667676644322 233445566678999997 99999999999877
No 136
>1pmi_A PMI, phosphomannose isomerase; aldose-ketose isomerase; 1.70A {Candida albicans} SCOP: b.82.1.3
Probab=67.49 E-value=1.8 Score=49.14 Aligned_cols=16 Identities=44% Similarity=0.675 Sum_probs=14.6
Q ss_pred eecCceeEecCCCccc
Q 002330 846 QKLGEAVFIPAGCPHQ 861 (935)
Q Consensus 846 Q~lGEAVFIPAGCPHQ 861 (935)
=++|||+|||||.||=
T Consensus 270 L~pGea~flpAg~~HA 285 (440)
T 1pmi_A 270 LNKGEAMFLQAKDPHA 285 (440)
T ss_dssp ECTTCEEEECTTCCEE
T ss_pred cCCCCEEecCCCCccc
Confidence 4689999999999996
No 137
>2yql_A PHD finger protein 21A; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=67.01 E-value=1 Score=36.94 Aligned_cols=49 Identities=27% Similarity=0.605 Sum_probs=36.2
Q ss_pred cCCCcccccccCCCCceEecCcCCCCcccHhHHhhhCCCCChhhhhccCCCCCC
Q 002330 199 LERIKCHQCMKSERKYVVPCGKCRTKVYCIQCIKQWYPKMSELDVAEICPFCRR 252 (935)
Q Consensus 199 ~~~~~CHQCrqk~~~~~v~C~~C~r~~FC~~CL~~rY~e~~~edv~w~CP~CRg 252 (935)
++...|..|++. +.++.|-.|. ..|=..||..-...++ .-.|.||.|..
T Consensus 7 ~~~~~C~vC~~~--g~ll~Cd~C~-~~~H~~Cl~ppl~~~p--~g~W~C~~C~~ 55 (56)
T 2yql_A 7 GHEDFCSVCRKS--GQLLMCDTCS-RVYHLDCLDPPLKTIP--KGMWICPRCQD 55 (56)
T ss_dssp SSCCSCSSSCCS--SCCEECSSSS-CEECSSSSSSCCCSCC--CSSCCCHHHHC
T ss_pred CCCCCCccCCCC--CeEEEcCCCC-cceECccCCCCcCCCC--CCceEChhhhC
Confidence 556789999976 4699999999 7787888874333332 24799999864
No 138
>1f62_A Transcription factor WSTF; Zn-finger; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=67.00 E-value=4.7 Score=32.08 Aligned_cols=47 Identities=23% Similarity=0.678 Sum_probs=35.3
Q ss_pred cccccccCC-CCceEecCcCCCCcccHhHHhhhCCCCChhhhhccCCCCCC
Q 002330 203 KCHQCMKSE-RKYVVPCGKCRTKVYCIQCIKQWYPKMSELDVAEICPFCRR 252 (935)
Q Consensus 203 ~CHQCrqk~-~~~~v~C~~C~r~~FC~~CL~~rY~e~~~edv~w~CP~CRg 252 (935)
.|..|++.. .+.++.|-.|. ..|=..||.--..+++ +-.|.||.|+.
T Consensus 2 ~C~vC~~~~~~~~ll~Cd~C~-~~~H~~Cl~p~l~~~P--~g~W~C~~C~~ 49 (51)
T 1f62_A 2 RCKVCRKKGEDDKLILCDECN-KAFHLFCLRPALYEVP--DGEWQCPACQP 49 (51)
T ss_dssp CCTTTCCSSCCSCCEECTTTC-CEECHHHHCTTCCSCC--SSCCSCTTTSC
T ss_pred CCCCCCCCCCCCCEEECCCCC-hhhCcccCCCCcCCCC--CCcEECcCccc
Confidence 588899875 56799999999 6888889864333332 23799999975
No 139
>1juh_A Quercetin 2,3-dioxygenase; cupin, glycoprotein, beta sandwich, oxidoreduct; HET: NAG BMA MAN; 1.60A {Aspergillus japonicus} SCOP: b.82.1.5 PDB: 1gqh_A* 1h1i_A* 1h1m_A* 1gqg_A*
Probab=66.83 E-value=1.9 Score=46.98 Aligned_cols=70 Identities=16% Similarity=0.171 Sum_probs=50.3
Q ss_pred ccCCcccCccccCHHHHHHHHHHhCccc-----eEEEeecCceeEecCCCccccccccccceecccccCccchHHHHHHH
Q 002330 814 VIHPIHDQCFYLSSEHKKKLKEEFGVEP-----WTFEQKLGEAVFIPAGCPHQVRNLKSCTKVAVDFVSPENVDECLRLT 888 (935)
Q Consensus 814 v~dPIHDQ~fYLt~ehk~rLkEEyGVep-----Wtf~Q~lGEAVFIPAGCPHQVRNLkSCIKVAlDFVSPEnV~eC~rLt 888 (935)
..|+-.++.||+-.-.- ++-|.. -++.=..||.|+||+|.||..+|.-.-. ..+-.++|....+-++-.
T Consensus 66 H~H~~~~E~~~Vl~G~~-----~~~v~~~~g~~~~~~L~~GD~v~ip~g~~H~~~n~~~~~-~~l~v~~p~~~~~~f~~l 139 (350)
T 1juh_A 66 HIHQKHYENFYCNKGSF-----QLWAQSGNETQQTRVLSSGDYGSVPRNVTHTFQIQDPDT-EMTGVIVPGGFEDLFYYL 139 (350)
T ss_dssp EECSSCEEEEEEEESEE-----EEEEEETTSCCEEEEEETTCEEEECTTEEEEEEECSTTE-EEEEEEESSCTTHHHHHH
T ss_pred ccCCCceEEEEEEEEEE-----EEEECCcCCceEEEEECCCCEEEECCCCcEEEEeCCCCC-EEEEEEcCccHHHHHHHh
Confidence 35666667777643322 244555 7788899999999999999999987654 667788888876665544
Q ss_pred H
Q 002330 889 K 889 (935)
Q Consensus 889 e 889 (935)
.
T Consensus 140 ~ 140 (350)
T 1juh_A 140 G 140 (350)
T ss_dssp S
T ss_pred c
Confidence 3
No 140
>1sef_A Conserved hypothetical protein; structural genomics, nysgxrc target T1582, PSI, protein STRU initiative; 2.05A {Enterococcus faecalis} SCOP: b.82.1.11
Probab=66.66 E-value=2 Score=44.94 Aligned_cols=31 Identities=13% Similarity=0.314 Sum_probs=26.2
Q ss_pred hCccceEEEeecCceeEecCCCccccccccc
Q 002330 837 FGVEPWTFEQKLGEAVFIPAGCPHQVRNLKS 867 (935)
Q Consensus 837 yGVepWtf~Q~lGEAVFIPAGCPHQVRNLkS 867 (935)
+-|..-++.=..||+|+||||+||+.+|.-.
T Consensus 216 ~~i~~~~~~l~~GD~i~i~~~~~H~~~n~~~ 246 (274)
T 1sef_A 216 YNLDNEWYPVEKGDYIFMSAYVPQAAYAVGR 246 (274)
T ss_dssp EEETTEEEEEETTCEEEECTTCCEEEEEECS
T ss_pred EEECCEEEEECCCCEEEECCCCCEEEEeCCC
Confidence 4555667788999999999999999999755
No 141
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=66.06 E-value=1.8 Score=39.73 Aligned_cols=45 Identities=22% Similarity=0.567 Sum_probs=32.6
Q ss_pred CCCcccccccCCCCceEecCcCCCCcccHhHHhhhCCCCChhhhhccCCCCCC
Q 002330 200 ERIKCHQCMKSERKYVVPCGKCRTKVYCIQCIKQWYPKMSELDVAEICPFCRR 252 (935)
Q Consensus 200 ~~~~CHQCrqk~~~~~v~C~~C~r~~FC~~CL~~rY~e~~~edv~w~CP~CRg 252 (935)
....|--|...-...++ ..|+ -.||..||..|... -...||.||.
T Consensus 17 ~~~~C~IC~~~~~~p~~--~~Cg-H~fC~~Ci~~~~~~-----~~~~CP~Cr~ 61 (118)
T 3hct_A 17 SKYECPICLMALREAVQ--TPCG-HRFCKACIIKSIRD-----AGHKCPVDNE 61 (118)
T ss_dssp GGGBCTTTCSBCSSEEE--CTTS-CEEEHHHHHHHHHH-----HCSBCTTTCC
T ss_pred CCCCCCcCChhhcCeEE--CCcC-ChhhHHHHHHHHhh-----CCCCCCCCCC
Confidence 34678889866554433 3699 99999999999742 1238999975
No 142
>4e2q_A Ureidoglycine aminohydrolase; BI-cupin, manganese binding, endoplasmic RET hydrolase; 2.50A {Arabidopsis thaliana} PDB: 4e2s_A
Probab=65.42 E-value=2.1 Score=45.76 Aligned_cols=29 Identities=10% Similarity=0.264 Sum_probs=22.8
Q ss_pred hCccceEEEeecCceeEecCCCccccccc
Q 002330 837 FGVEPWTFEQKLGEAVFIPAGCPHQVRNL 865 (935)
Q Consensus 837 yGVepWtf~Q~lGEAVFIPAGCPHQVRNL 865 (935)
|-+..=.+.=+.||++|||+||||+..|.
T Consensus 220 y~l~~~~~~V~~GD~i~~~~~~~h~~~n~ 248 (266)
T 4e2q_A 220 YRLGDNWYPVQAGDVIWMAPFVPQWYAAL 248 (266)
T ss_dssp EEETTEEEEEETTCEEEECTTCCEEEEEE
T ss_pred EEECCEEEEecCCCEEEECCCCcEEEEeC
Confidence 44444455567899999999999999986
No 143
>1j58_A YVRK protein; cupin, decarboxyklase, oxalate, manganese, formate, metal BI protein; 1.75A {Bacillus subtilis} SCOP: b.82.1.2 PDB: 1l3j_A 1uw8_A 2uyb_A 2uy9_A 2uy8_A 2v09_A 2uya_A 3s0m_A
Probab=65.18 E-value=2.2 Score=46.45 Aligned_cols=27 Identities=26% Similarity=0.487 Sum_probs=23.0
Q ss_pred ceEEEeecCceeEecCCCccccccccc
Q 002330 841 PWTFEQKLGEAVFIPAGCPHQVRNLKS 867 (935)
Q Consensus 841 pWtf~Q~lGEAVFIPAGCPHQVRNLkS 867 (935)
.-++.=..||+++||+|+||+++|.-+
T Consensus 300 ~~~~~l~~GD~~~ip~~~~H~~~n~~~ 326 (385)
T 1j58_A 300 ARTFNYQAGDVGYVPFAMGHYVENIGD 326 (385)
T ss_dssp EEEEEEESSCEEEECTTCBEEEEECSS
T ss_pred EEEEEEcCCCEEEECCCCeEEEEECCC
Confidence 345667799999999999999999854
No 144
>2vpv_A Protein MIF2, MIF2P; nucleus, mitosis, centromere, cell cycle, DNA-binding, kinetochore, cell division, phosphoprotein, jelly-roll fold; 2.7A {Saccharomyces cerevisiae}
Probab=64.86 E-value=3 Score=41.62 Aligned_cols=29 Identities=24% Similarity=0.115 Sum_probs=24.7
Q ss_pred ccceEEEeecCceeEecCCCccccccccc
Q 002330 839 VEPWTFEQKLGEAVFIPAGCPHQVRNLKS 867 (935)
Q Consensus 839 VepWtf~Q~lGEAVFIPAGCPHQVRNLkS 867 (935)
|..=+|.=..||.++||||.||..+|.-+
T Consensus 125 l~g~~~~L~~Gds~~iP~g~~H~~~N~~d 153 (166)
T 2vpv_A 125 VCKNKFLSVKGSTFQIPAFNEYAIANRGN 153 (166)
T ss_dssp ETTEEEEEETTCEEEECTTCEEEEEECSS
T ss_pred ECCEEEEEcCCCEEEECCCCCEEEEECCC
Confidence 44457777899999999999999999765
No 145
>4diq_A Lysine-specific demethylase NO66; structural genomics, structural genomics consortium, SGC, HI demethylase, oxidoreductase; HET: PD2; 2.40A {Homo sapiens}
Probab=64.68 E-value=3.8 Score=47.34 Aligned_cols=42 Identities=14% Similarity=0.239 Sum_probs=34.6
Q ss_pred hCccceEEEeecCceeEecCCCccccccccc--cceecccccCc
Q 002330 837 FGVEPWTFEQKLGEAVFIPAGCPHQVRNLKS--CTKVAVDFVSP 878 (935)
Q Consensus 837 yGVepWtf~Q~lGEAVFIPAGCPHQVRNLkS--CIKVAlDFVSP 878 (935)
.+-..+.++-.+||..|||.|.+|||+++-. ++.+++-+-.|
T Consensus 223 ~~~p~~e~~L~pGDvLYiP~g~~H~~~s~~~~~SlhlTi~~~~~ 266 (489)
T 4diq_A 223 LGEPVLQTVLEPGDLLYFPRGFIHQAECQDGVHSLHLTLSTYQR 266 (489)
T ss_dssp CCCCSEEEEECTTCEEEECTTCEEEEEBCSSCCEEEEEEEECTT
T ss_pred ccCcceEEEECCCCEEEECCCCceEEEecCCCceEEEeecccCc
Confidence 3567789999999999999999999999954 67777666544
No 146
>2d40_A Z3393, putative gentisate 1,2-dioxygenase; gentisic acid, bicupin, tetramer, montreal- bacterial structural genomics initiative, BSGI; 2.41A {Escherichia coli} SCOP: b.82.1.23
Probab=64.37 E-value=3.2 Score=45.41 Aligned_cols=40 Identities=15% Similarity=0.027 Sum_probs=30.5
Q ss_pred ccceEEEeecCceeEecCCCccccccccccceecccccCc
Q 002330 839 VEPWTFEQKLGEAVFIPAGCPHQVRNLKSCTKVAVDFVSP 878 (935)
Q Consensus 839 VepWtf~Q~lGEAVFIPAGCPHQVRNLkSCIKVAlDFVSP 878 (935)
|.+-++.=..||+|+||+|.+|+.+|.-+---+-++|..|
T Consensus 136 v~g~~~~l~~GD~~~iP~g~~H~~~n~~~~~~~~l~v~d~ 175 (354)
T 2d40_A 136 VDGERTPMNEGDFILTPQWRWHDHGNPGDEPVIWLDGLDL 175 (354)
T ss_dssp ETTEEEECCTTCEEEECTTSCEEEECCSSSCEEEEEEECH
T ss_pred ECCEEEEEcCCCEEEECCCCcEEeEeCCCCCEEEEEEECc
Confidence 4555788889999999999999999985532344666654
No 147
>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A
Probab=63.99 E-value=5.1 Score=34.72 Aligned_cols=41 Identities=29% Similarity=0.724 Sum_probs=29.9
Q ss_pred CCCcccccccCCCCceEecCcCCCCc-ccHhHHhhhCCCCChhhhhccCCCCCCc
Q 002330 200 ERIKCHQCMKSERKYVVPCGKCRTKV-YCIQCIKQWYPKMSELDVAEICPFCRRN 253 (935)
Q Consensus 200 ~~~~CHQCrqk~~~~~v~C~~C~r~~-FC~~CL~~rY~e~~~edv~w~CP~CRgi 253 (935)
....|--|.......+. ..|+ .. ||..|+.++ +.||.||..
T Consensus 17 ~~~~C~IC~~~~~~~v~--~pCg-H~~~C~~C~~~~----------~~CP~Cr~~ 58 (79)
T 2yho_A 17 EAMLCMVCCEEEINSTF--CPCG-HTVCCESCAAQL----------QSCPVCRSR 58 (79)
T ss_dssp HHTBCTTTSSSBCCEEE--ETTC-BCCBCHHHHTTC----------SBCTTTCCB
T ss_pred CCCEeEEeCcccCcEEE--ECCC-CHHHHHHHHHhc----------CcCCCCCch
Confidence 34689999877654333 3588 55 999999865 399999984
No 148
>2xdv_A MYC-induced nuclear antigen; ribosome biogenesis, nuclear protein; HET: OGA; 2.57A {Homo sapiens}
Probab=63.55 E-value=3.9 Score=46.41 Aligned_cols=30 Identities=27% Similarity=0.440 Sum_probs=27.4
Q ss_pred hCccceEEEeecCceeEecCCCcccccccc
Q 002330 837 FGVEPWTFEQKLGEAVFIPAGCPHQVRNLK 866 (935)
Q Consensus 837 yGVepWtf~Q~lGEAVFIPAGCPHQVRNLk 866 (935)
+|...+.++=.+||+.|||+|.+|+|+++-
T Consensus 194 ~~~~~~~~~L~pGD~LYiP~g~~H~~~s~~ 223 (442)
T 2xdv_A 194 IGRPVHEFMLKPGDLLYFPRGTIHQADTPA 223 (442)
T ss_dssp SCSCSEEEEECTTCEEEECTTCEEEEECCS
T ss_pred cCCcceEEEECCCcEEEECCCceEEEEecC
Confidence 566778999999999999999999999986
No 149
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2
Probab=63.32 E-value=13 Score=33.46 Aligned_cols=46 Identities=13% Similarity=-0.044 Sum_probs=34.6
Q ss_pred CCCcccccccCCCCceEecCcCCCCcccHhHHhhhCCCCChhhhhccCCCCCCc
Q 002330 200 ERIKCHQCMKSERKYVVPCGKCRTKVYCIQCIKQWYPKMSELDVAEICPFCRRN 253 (935)
Q Consensus 200 ~~~~CHQCrqk~~~~~v~C~~C~r~~FC~~CL~~rY~e~~~edv~w~CP~CRgi 253 (935)
....|--|..--.+.++ ..|+...||..||..|... ...||+|+..
T Consensus 21 ~~~~CpI~~~~m~dPV~--~~cG~htf~r~cI~~~l~~------~~~cP~~~~~ 66 (98)
T 1wgm_A 21 DEFLDPIMSTLMCDPVV--LPSSRVTVDRSTIARHLLS------DQTDPFNRSP 66 (98)
T ss_dssp TTTBCTTTCSBCSSEEE--CTTTCCEEEHHHHHHHTTT------SCBCTTTCSB
T ss_pred HhcCCcCccccccCCeE--CCCCCeEECHHHHHHHHHh------CCCCCCCCCC
Confidence 35788888876665554 3577678999999999864 3489999863
No 150
>1fp0_A KAP-1 corepressor; PHD domain, C3HC4 type zinc binding domain, -structure, transcription; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=63.23 E-value=3.1 Score=37.74 Aligned_cols=50 Identities=18% Similarity=0.473 Sum_probs=38.0
Q ss_pred ccCCCcccccccCCCCceEecCcCCCCcccHhHHhhhCCCCChhhhhccCCCCCC
Q 002330 198 ELERIKCHQCMKSERKYVVPCGKCRTKVYCIQCIKQWYPKMSELDVAEICPFCRR 252 (935)
Q Consensus 198 k~~~~~CHQCrqk~~~~~v~C~~C~r~~FC~~CL~~rY~e~~~edv~w~CP~CRg 252 (935)
..+...|..|++.. .++.|-.|. ..|=..||..-..+++ +-.|.||.|+.
T Consensus 22 d~n~~~C~vC~~~g--~LL~CD~C~-~~fH~~Cl~PpL~~~P--~g~W~C~~C~~ 71 (88)
T 1fp0_A 22 DDSATICRVCQKPG--DLVMCNQCE-FCFHLDCHLPALQDVP--GEEWSCSLCHV 71 (88)
T ss_dssp SSSSSCCSSSCSSS--CCEECTTSS-CEECTTSSSTTCCCCC--SSSCCCCSCCC
T ss_pred CCCCCcCcCcCCCC--CEEECCCCC-CceecccCCCCCCCCc--CCCcCCccccC
Confidence 45677899999764 599999999 7888888865444443 24699999975
No 151
>1mm2_A MI2-beta; PHD, zinc finger, protein scaffold, DNA binding protein; NMR {Homo sapiens} SCOP: g.50.1.2 PDB: 2l75_A* 1mm3_A
Probab=62.88 E-value=2.7 Score=35.13 Aligned_cols=50 Identities=22% Similarity=0.593 Sum_probs=36.5
Q ss_pred ccCCCcccccccCCCCceEecCcCCCCcccHhHHhhhCCCCChhhhhccCCCCCC
Q 002330 198 ELERIKCHQCMKSERKYVVPCGKCRTKVYCIQCIKQWYPKMSELDVAEICPFCRR 252 (935)
Q Consensus 198 k~~~~~CHQCrqk~~~~~v~C~~C~r~~FC~~CL~~rY~e~~~edv~w~CP~CRg 252 (935)
..+...|..|.+. +.++.|-.|. ..|=..||.--..+++ +-.|.||.|+.
T Consensus 6 d~~~~~C~vC~~~--g~ll~Cd~C~-~~fH~~Cl~ppl~~~p--~g~W~C~~C~~ 55 (61)
T 1mm2_A 6 DHHMEFCRVCKDG--GELLCCDTCP-SSYHIHCLNPPLPEIP--NGEWLCPRCTC 55 (61)
T ss_dssp CSSCSSCTTTCCC--SSCBCCSSSC-CCBCSSSSSSCCSSCC--SSCCCCTTTTT
T ss_pred cCCCCcCCCCCCC--CCEEEcCCCC-HHHcccccCCCcCcCC--CCccCChhhcC
Confidence 3456789999864 5699999999 6788888875433332 24799999964
No 152
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=61.82 E-value=3 Score=33.51 Aligned_cols=43 Identities=21% Similarity=0.613 Sum_probs=29.8
Q ss_pred cCCCcccccccCCCCceEecCcCCCCcccHhHHhhhCCCCChhhhhccCCCCCCc
Q 002330 199 LERIKCHQCMKSERKYVVPCGKCRTKVYCIQCIKQWYPKMSELDVAEICPFCRRN 253 (935)
Q Consensus 199 ~~~~~CHQCrqk~~~~~v~C~~C~r~~FC~~CL~~rY~e~~~edv~w~CP~CRgi 253 (935)
....+|--|...-...+ -..|+ ..||..||..| ...||.||..
T Consensus 4 ~~~~~C~IC~~~~~~p~--~l~Cg-H~fC~~Ci~~~---------~~~CP~Cr~~ 46 (56)
T 1bor_A 4 FQFLRCQQCQAEAKCPK--LLPCL-HTLCSGCLEAS---------GMQCPICQAP 46 (56)
T ss_dssp CCCSSCSSSCSSCBCCS--CSTTS-CCSBTTTCSSS---------SSSCSSCCSS
T ss_pred ccCCCceEeCCccCCeE--EcCCC-CcccHHHHccC---------CCCCCcCCcE
Confidence 34567888876544322 23588 89999999872 4479999874
No 153
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=61.79 E-value=3.9 Score=37.11 Aligned_cols=47 Identities=26% Similarity=0.765 Sum_probs=32.4
Q ss_pred CCCcccccccCCC-----CceEecCcCCCCcccHhHHhhhCCCCChhhhhccCCCCCCc
Q 002330 200 ERIKCHQCMKSER-----KYVVPCGKCRTKVYCIQCIKQWYPKMSELDVAEICPFCRRN 253 (935)
Q Consensus 200 ~~~~CHQCrqk~~-----~~~v~C~~C~r~~FC~~CL~~rY~e~~~edv~w~CP~CRgi 253 (935)
+...|--|...-. +..+.-..|+ ..||..||.+|.... ..||.||..
T Consensus 6 ~~~~C~IC~~~~~~~~~~~~~~~~~~Cg-H~fc~~Ci~~~~~~~------~~CP~Cr~~ 57 (133)
T 4ap4_A 6 GTVSCPICMDGYSEIVQNGRLIVSTECG-HVFCSQCLRDSLKNA------NTCPTCRKK 57 (133)
T ss_dssp CSCBCTTTCCBHHHHHHTTCCEEEETTC-CEEEHHHHHHHHTTC------SBCTTTCCB
T ss_pred CCCCCcccChhhhCccccccCeEecCCC-ChhhHHHHHHHHHhC------CCCCCCCCc
Confidence 4567777875422 1223445799 899999999998643 389998873
No 154
>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A
Probab=61.68 E-value=3.5 Score=34.28 Aligned_cols=47 Identities=23% Similarity=0.535 Sum_probs=33.2
Q ss_pred CCCcccccccCCCCceEecCcCCCCc-ccHhHHhhhCCCCChhhhhccCCCCCCc
Q 002330 200 ERIKCHQCMKSERKYVVPCGKCRTKV-YCIQCIKQWYPKMSELDVAEICPFCRRN 253 (935)
Q Consensus 200 ~~~~CHQCrqk~~~~~v~C~~C~r~~-FC~~CL~~rY~e~~~edv~w~CP~CRgi 253 (935)
....|--|.......+..-..|+ .. ||..|+.++.. ..+.||.||..
T Consensus 7 ~~~~C~IC~~~~~~~~~~~~pCg-H~~~C~~C~~~~~~------~~~~CPiCR~~ 54 (64)
T 2vje_A 7 AIEPCVICQGRPKNGCIVHGKTG-HLMACFTCAKKLKK------RNKPCPVCRQP 54 (64)
T ss_dssp GGSCCTTTSSSCSCEEEEETTEE-EEEECHHHHHHHHH------TTCCCTTTCCC
T ss_pred CcCCCCcCCCCCCCEEEECCCCC-ChhhHHHHHHHHHH------cCCcCCCcCcc
Confidence 45678999877765544323577 54 89999998763 24689999973
No 155
>1x4w_A Hypothetical protein FLJ13222; ZF-AN1 domain, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=61.27 E-value=3.5 Score=35.87 Aligned_cols=33 Identities=27% Similarity=0.742 Sum_probs=24.6
Q ss_pred CCcccccccCCCCc---eEecCcCCCCcccHhHHhhhCCCC
Q 002330 201 RIKCHQCMKSERKY---VVPCGKCRTKVYCIQCIKQWYPKM 238 (935)
Q Consensus 201 ~~~CHQCrqk~~~~---~v~C~~C~r~~FC~~CL~~rY~e~ 238 (935)
..+|..|+++..-. ...| .|+ ..||. .-||++.
T Consensus 15 ~~rC~~C~kk~gL~~~egf~C-rCg-~~FC~---~HRy~e~ 50 (67)
T 1x4w_A 15 RRRCFQCQTKLELVQQELGSC-RCG-YVFCM---LHRLPEQ 50 (67)
T ss_dssp TTBCSSSCCBCCHHHHHHHCC-SSS-CCCCT---TTCSTGG
T ss_pred CCcchhhCCeecccccCceEe-cCC-CEehh---ccCCccc
Confidence 46899999987622 1589 899 99976 5678754
No 156
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=60.95 E-value=3.8 Score=37.93 Aligned_cols=51 Identities=22% Similarity=0.586 Sum_probs=37.8
Q ss_pred cCCCcccccccCC--CCceEecCcCCCCcccHhHHhhhCCCCChhhhhccCCCCCC
Q 002330 199 LERIKCHQCMKSE--RKYVVPCGKCRTKVYCIQCIKQWYPKMSELDVAEICPFCRR 252 (935)
Q Consensus 199 ~~~~~CHQCrqk~--~~~~v~C~~C~r~~FC~~CL~~rY~e~~~edv~w~CP~CRg 252 (935)
..-+.|+.|++.. .+.++.|..|. ..|=..||..-..+++. -.|.||.|+.
T Consensus 59 ~~C~~C~vC~~~~~~~~~ll~Cd~C~-~~yH~~Cl~p~l~~~P~--~~W~C~~C~~ 111 (112)
T 3v43_A 59 IECKTCSSCRDQGKNADNMLFCDSCD-RGFHMECCDPPLTRMPK--GMWICQICRP 111 (112)
T ss_dssp TTTCCBTTTCCCCCTTCCCEECTTTC-CEECGGGCSSCCSSCCS--SCCCCTTTSC
T ss_pred ccCCccccccCcCCCccceEEcCCCC-CeeecccCCCCCCCCCC--CCeECCCCCC
Confidence 4456788888753 45799999999 88889998755554433 2799999974
No 157
>1sq4_A GLXB, glyoxylate-induced protein; structural genomics, double beta barrel protein, PSI, protei structure initiative; 2.70A {Pseudomonas aeruginosa} SCOP: b.82.1.11
Probab=60.27 E-value=2.9 Score=44.13 Aligned_cols=31 Identities=26% Similarity=0.405 Sum_probs=25.4
Q ss_pred hCccceEEEeecCceeEecCCCccccccccc
Q 002330 837 FGVEPWTFEQKLGEAVFIPAGCPHQVRNLKS 867 (935)
Q Consensus 837 yGVepWtf~Q~lGEAVFIPAGCPHQVRNLkS 867 (935)
+.|..=++.=..||+++||||.||+++|.-+
T Consensus 103 v~v~g~~~~L~~GD~i~ip~~~~H~~~N~g~ 133 (278)
T 1sq4_A 103 LTLQGQVHAMQPGGYAFIPPGADYKVRNTTG 133 (278)
T ss_dssp EEESSCEEEECTTEEEEECTTCCEEEECCSS
T ss_pred EEECCEEEEECCCCEEEECCCCcEEEEECCC
Confidence 3445557778899999999999999999843
No 158
>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=59.14 E-value=9.2 Score=32.22 Aligned_cols=42 Identities=29% Similarity=0.699 Sum_probs=29.8
Q ss_pred cCCCcccccccCCCCceEecCcCCCCc-ccHhHHhhhCCCCChhhhhccCCCCCCc
Q 002330 199 LERIKCHQCMKSERKYVVPCGKCRTKV-YCIQCIKQWYPKMSELDVAEICPFCRRN 253 (935)
Q Consensus 199 ~~~~~CHQCrqk~~~~~v~C~~C~r~~-FC~~CL~~rY~e~~~edv~w~CP~CRgi 253 (935)
.....|--|.......+ -.-|+ .. ||..|+.+ .+.||.||..
T Consensus 13 ~~~~~C~IC~~~~~~~v--~~pCg-H~~~C~~C~~~----------~~~CP~CR~~ 55 (68)
T 2ea5_A 13 ENSKDCVVCQNGTVNWV--LLPCR-HTCLCDGCVKY----------FQQCPMCRQF 55 (68)
T ss_dssp CCSSCCSSSSSSCCCCE--ETTTT-BCCSCTTHHHH----------CSSCTTTCCC
T ss_pred CCCCCCCCcCcCCCCEE--EECCC-ChhhhHHHHhc----------CCCCCCCCcc
Confidence 34567999988766433 23477 44 99999984 2689999973
No 159
>3nw4_A Gentisate 1,2-dioxygenase; beta-barrel, oxidoreductase; HET: GTQ; 2.00A {Pseudaminobacter salicylatoxidans} PDB: 3nvc_A* 3nst_A* 3njz_A* 2phd_A* 3nkt_A* 3nl1_A* 4fag_A* 4fbf_A 4fah_A
Probab=58.75 E-value=4.4 Score=45.17 Aligned_cols=29 Identities=21% Similarity=0.229 Sum_probs=25.2
Q ss_pred ccceEEEeecCceeEecCCCccccccccc
Q 002330 839 VEPWTFEQKLGEAVFIPAGCPHQVRNLKS 867 (935)
Q Consensus 839 VepWtf~Q~lGEAVFIPAGCPHQVRNLkS 867 (935)
|.+=++.=..||+|+||+|+.|++.|--+
T Consensus 139 vdG~~~~~~~GD~v~iP~g~~H~~~N~gd 167 (368)
T 3nw4_A 139 VNGDPVRMSRGDLLLTPGWCFHGHMNDTD 167 (368)
T ss_dssp ETTEEEEEETTCEEEECTTCCEEEEECSS
T ss_pred ECCEEEEEeCCCEEEECCCCcEEeEeCCC
Confidence 56668889999999999999999999643
No 160
>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B
Probab=58.72 E-value=6.8 Score=43.17 Aligned_cols=42 Identities=31% Similarity=0.726 Sum_probs=32.5
Q ss_pred cCCCcccccccCCCCceEecCcCCCCc-ccHhHHhhhCCCCChhhhhccCCCCCCc
Q 002330 199 LERIKCHQCMKSERKYVVPCGKCRTKV-YCIQCIKQWYPKMSELDVAEICPFCRRN 253 (935)
Q Consensus 199 ~~~~~CHQCrqk~~~~~v~C~~C~r~~-FC~~CL~~rY~e~~~edv~w~CP~CRgi 253 (935)
.....|.-|...-...+.. .|+ .. ||..|+..+ ..||.||..
T Consensus 293 ~~~~~C~IC~~~~~~~v~l--pCg-H~~fC~~C~~~~----------~~CP~CR~~ 335 (345)
T 3t6p_A 293 QEERTCKVCMDKEVSVVFI--PCG-HLVVCQECAPSL----------RKCPICRGI 335 (345)
T ss_dssp HTTCBCTTTSSSBCCEEEE--TTC-CEEECTTTGGGC----------SBCTTTCCB
T ss_pred cCCCCCCccCCcCCceEEc--CCC-ChhHhHHHHhcC----------CcCCCCCCC
Confidence 4568999999876644432 688 66 999999977 589999974
No 161
>3bu7_A Gentisate 1,2-dioxygenase; cupin domain, oxidoreductase, plasmid; 2.80A {Silicibacter pomeroyi} SCOP: b.82.1.23
Probab=58.51 E-value=4.3 Score=45.56 Aligned_cols=29 Identities=21% Similarity=0.094 Sum_probs=25.8
Q ss_pred CccceEEEeecCceeEecCCCcccccccc
Q 002330 838 GVEPWTFEQKLGEAVFIPAGCPHQVRNLK 866 (935)
Q Consensus 838 GVepWtf~Q~lGEAVFIPAGCPHQVRNLk 866 (935)
-|.+-+|.-..||+||||+|.+||+.|.-
T Consensus 328 ~V~ge~~~~~~GD~~~iP~g~~H~~~N~g 356 (394)
T 3bu7_A 328 IVGGKRFDWSEHDIFCVPAWTWHEHCNTQ 356 (394)
T ss_dssp EETTEEEEECTTCEEEECTTCCEEEEECC
T ss_pred EECCEEEEEeCCCEEEECCCCeEEeEeCC
Confidence 35677899999999999999999999974
No 162
>1sfn_A Conserved hypothetical protein; structural genomics, nysgxrc target T1583, PSI, protein STRU initiative; 2.46A {Deinococcus radiodurans} SCOP: b.82.1.11
Probab=58.35 E-value=3.4 Score=42.61 Aligned_cols=32 Identities=19% Similarity=0.393 Sum_probs=25.9
Q ss_pred HhCccceEEEeecCceeEecCCCccccccccc
Q 002330 836 EFGVEPWTFEQKLGEAVFIPAGCPHQVRNLKS 867 (935)
Q Consensus 836 EyGVepWtf~Q~lGEAVFIPAGCPHQVRNLkS 867 (935)
+|-+..=++.=..||.+|++|||||+.+|.-.
T Consensus 198 ~~~~~~~~~~l~~GD~~~~~~~~pH~~~n~g~ 229 (246)
T 1sfn_A 198 LYKLEENYYPVTAGDIIWMGAHCPQWYGALGR 229 (246)
T ss_dssp EEEETTEEEEEETTCEEEECTTCCEEEEEESS
T ss_pred EEEECCEEEEcCCCCEEEECCCCCEEEEcCCC
Confidence 35556666677899999999999999999643
No 163
>1dgw_A Canavalin; duplicated swiss-roll beta barrels, loops with alpha helices merohedral/ hemihedral twinning, plant protein; 1.70A {Canavalia ensiformis} SCOP: b.82.1.2 PDB: 1dgr_A 1cau_A 1cav_A 1caw_A 1cax_A
Probab=58.15 E-value=4.5 Score=39.82 Aligned_cols=27 Identities=30% Similarity=0.395 Sum_probs=23.0
Q ss_pred ceEEEeecCceeEecCCCccccccccc
Q 002330 841 PWTFEQKLGEAVFIPAGCPHQVRNLKS 867 (935)
Q Consensus 841 pWtf~Q~lGEAVFIPAGCPHQVRNLkS 867 (935)
.-++.=..||+++||+|.||..+|.-+
T Consensus 82 ~~~~~l~~GDv~~~P~g~~H~~~N~g~ 108 (178)
T 1dgw_A 82 RDTYKLDQGDAIKIQAGTPFYLINPDN 108 (178)
T ss_dssp EEEEEEETTEEEEECTTCCEEEEECCS
T ss_pred cEEEEECCCCEEEECCCCeEEEEeCCC
Confidence 346677889999999999999999854
No 164
>1zrr_A E-2/E-2' protein; nickel, cupin, beta helix, methionine salvage, oxidoreductase; NMR {Klebsiella oxytoca} SCOP: b.82.1.6 PDB: 2hji_A
Probab=56.60 E-value=7.3 Score=39.13 Aligned_cols=37 Identities=14% Similarity=0.104 Sum_probs=26.2
Q ss_pred EEEeecCceeEecCCCccccccccccceecccccCcc
Q 002330 843 TFEQKLGEAVFIPAGCPHQVRNLKSCTKVAVDFVSPE 879 (935)
Q Consensus 843 tf~Q~lGEAVFIPAGCPHQVRNLkSCIKVAlDFVSPE 879 (935)
++.=..||.|+||||.||...+-..--=+|+.|-+++
T Consensus 123 ~~~l~~GDli~IP~g~~H~~~~~~~~~~~~ir~F~~~ 159 (179)
T 1zrr_A 123 QVLCEKNDLISVPAHTPHWFDMGSEPNFTAIRIFDNP 159 (179)
T ss_dssp EEECCCSCEEEECTTCCBCCCCSSCSSCEEEEEECCG
T ss_pred EEEECCCCEEEECCCCeEeeecCCCceEEEEEeccCC
Confidence 4556899999999999999988665322344444443
No 165
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=55.95 E-value=2.2 Score=40.64 Aligned_cols=36 Identities=22% Similarity=0.519 Sum_probs=29.9
Q ss_pred CCCcccccccCC--CCceEecCcCCCCcccHhHHhhhCC
Q 002330 200 ERIKCHQCMKSE--RKYVVPCGKCRTKVYCIQCIKQWYP 236 (935)
Q Consensus 200 ~~~~CHQCrqk~--~~~~v~C~~C~r~~FC~~CL~~rY~ 236 (935)
....|..|..+- ..+...|+.|+ ..||..|...+.+
T Consensus 68 ~~~~C~~C~~~Fs~~~RrHHCR~CG-~vfC~~Cs~~~~~ 105 (125)
T 1joc_A 68 EVQNCMACGKGFSVTVRRHHCRQCG-NIFCAECSAKNAL 105 (125)
T ss_dssp GCCBCTTTCCBCCSSSCCEECTTTC-CEECGGGSCEEEC
T ss_pred CCCCCcCcCCccccccccccCCCCC-eEEChHHhCCccc
Confidence 467899999875 35678999999 9999999988754
No 166
>2vqa_A SLL1358 protein, MNCA; periplasmic binding protein, metal-binding protein, cupin, BI-cupin, oxalate decarboxylase; 2.95A {Synechocystis SP}
Probab=55.66 E-value=3.2 Score=44.49 Aligned_cols=25 Identities=16% Similarity=0.312 Sum_probs=22.2
Q ss_pred eEEEeecCceeEecCCCcccccccc
Q 002330 842 WTFEQKLGEAVFIPAGCPHQVRNLK 866 (935)
Q Consensus 842 Wtf~Q~lGEAVFIPAGCPHQVRNLk 866 (935)
-++.=..||+++||+|.||..+|.-
T Consensus 96 ~~~~l~~GD~~~ip~g~~H~~~n~~ 120 (361)
T 2vqa_A 96 EIADVDKGGLWYFPRGWGHSIEGIG 120 (361)
T ss_dssp EEEEEETTEEEEECTTCEEEEEECS
T ss_pred EEEEEcCCCEEEECCCCeEEEEeCC
Confidence 4567778999999999999999986
No 167
>2ro1_A Transcription intermediary factor 1-beta; KAP, TIF, PHD finger, bromodomain, SUMO, acetylation, alternative splicing, metal-binding, nucleus; NMR {Homo sapiens}
Probab=55.47 E-value=4.2 Score=40.99 Aligned_cols=48 Identities=19% Similarity=0.477 Sum_probs=35.5
Q ss_pred CCcccccccCCCCceEecCcCCCCcccHhHHhhhCCCCChhhhhccCCCCCCc
Q 002330 201 RIKCHQCMKSERKYVVPCGKCRTKVYCIQCIKQWYPKMSELDVAEICPFCRRN 253 (935)
Q Consensus 201 ~~~CHQCrqk~~~~~v~C~~C~r~~FC~~CL~~rY~e~~~edv~w~CP~CRgi 253 (935)
...|..|+.. +.++.|-.|. ..|-..|+.--..... .-.|.||.|+..
T Consensus 2 ~~~C~~C~~~--g~ll~Cd~C~-~~~H~~Cl~p~l~~~p--~g~W~C~~C~~~ 49 (189)
T 2ro1_A 2 ATICRVCQKP--GDLVMCNQCE-FCFHLDCHLPALQDVP--GEEWSCSLCHVL 49 (189)
T ss_dssp CCCBTTTCCC--SSCCCCTTTC-CBCCSTTSTTCCSSCC--CTTCCTTTTSCS
T ss_pred CCcCccCCCC--CceeECCCCC-chhccccCCCCcccCC--CCCCCCcCccCC
Confidence 3579999866 4589999999 8898889864333322 346999999865
No 168
>2ct7_A Ring finger protein 31; IBR, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.4
Probab=54.73 E-value=6.6 Score=34.75 Aligned_cols=37 Identities=27% Similarity=0.908 Sum_probs=27.3
Q ss_pred ccCCCCc-ccccCcccccc----ccccccCcCCcccchhchH
Q 002330 324 LCGNDER-VYCNHCATSII----DLHRSCPKCSYELCLTCCK 360 (935)
Q Consensus 324 ~~~~DER-vyCDnCkTSI~----D~HRSC~~CsyDLCL~CC~ 360 (935)
.+..+.+ .||-+|.+.|. .....|+.|++.+|..|-.
T Consensus 18 ~v~~~~~~~wCP~C~~~~~~~~~~~~v~C~~C~~~FC~~C~~ 59 (86)
T 2ct7_A 18 VLMRDPKFLWCAQCSFGFIYEREQLEATCPQCHQTFCVRCKR 59 (86)
T ss_dssp CCCSCCCEECCSSSCCCEECCCSCSCEECTTTCCEECSSSCS
T ss_pred HHhcCCCEeECcCCCchheecCCCCceEeCCCCCccccccCC
Confidence 3334444 47999999764 3446899999999999964
No 169
>2d5f_A Glycinin A3B4 subunit; soybean, globulin, 11S,SEED storage protein, plant; 1.90A {Glycine max} PDB: 2d5h_A 1od5_A
Probab=53.65 E-value=5.3 Score=46.01 Aligned_cols=32 Identities=25% Similarity=0.416 Sum_probs=25.0
Q ss_pred ecCceeEecCCCccccccccccceecccccCc
Q 002330 847 KLGEAVFIPAGCPHQVRNLKSCTKVAVDFVSP 878 (935)
Q Consensus 847 ~lGEAVFIPAGCPHQVRNLkSCIKVAlDFVSP 878 (935)
..||+|+||||.||-..|.-+--=|++-++.+
T Consensus 118 ~~GDvi~iPaG~~h~~~N~g~~~l~~v~~~d~ 149 (493)
T 2d5f_A 118 NEGDVLVIPPGVPYWTYNTGDEPVVAISLLDT 149 (493)
T ss_dssp ETTEEEEECTTCCEEEEECSSSCEEEEEEECT
T ss_pred cCCCEEEECCCCcEEEEeCCCCCEEEEEEecC
Confidence 67999999999999999998754455444443
No 170
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=53.42 E-value=9.4 Score=34.94 Aligned_cols=58 Identities=19% Similarity=0.443 Sum_probs=42.6
Q ss_pred cCCCcccccccCCC-CceEecCcCCCCcccHhHHhhhCCCCChhhhhccCCCCCCcccCcccccc
Q 002330 199 LERIKCHQCMKSER-KYVVPCGKCRTKVYCIQCIKQWYPKMSELDVAEICPFCRRNCNCSVCLHT 262 (935)
Q Consensus 199 ~~~~~CHQCrqk~~-~~~v~C~~C~r~~FC~~CL~~rY~e~~~edv~w~CP~CRgiCNCs~Clr~ 262 (935)
.+...|..|..... ..++.|..|. ..|=..||......+ ....|.||.|. .|.+|.+.
T Consensus 5 ~~~~~C~~C~~~g~~~~ll~C~~C~-~~~H~~Cl~~~~~~~--~~~~W~C~~C~---~C~~C~~~ 63 (111)
T 2ysm_A 5 SSGANCAVCDSPGDLLDQFFCTTCG-QHYHGMCLDIAVTPL--KRAGWQCPECK---VCQNCKQS 63 (111)
T ss_dssp CCCSCBTTTCCCCCTTTSEECSSSC-CEECTTTTTCCCCTT--TSTTCCCTTTC---CCTTTCCC
T ss_pred CCCCCCcCCCCCCCCcCCeECCCCC-CCcChHHhCCccccc--cccCccCCcCC---cccccCcc
Confidence 35678999987763 4569999999 778888888654322 24579999987 57777654
No 171
>1sfn_A Conserved hypothetical protein; structural genomics, nysgxrc target T1583, PSI, protein STRU initiative; 2.46A {Deinococcus radiodurans} SCOP: b.82.1.11
Probab=53.34 E-value=4.4 Score=41.77 Aligned_cols=31 Identities=23% Similarity=0.225 Sum_probs=24.9
Q ss_pred CccceEEEeecCceeEecCCCcccccccccc
Q 002330 838 GVEPWTFEQKLGEAVFIPAGCPHQVRNLKSC 868 (935)
Q Consensus 838 GVepWtf~Q~lGEAVFIPAGCPHQVRNLkSC 868 (935)
.|..=++.=..||+++||||.||+++|...+
T Consensus 82 ~~~~~~~~l~~Gd~~~~p~~~~H~~~n~~~~ 112 (246)
T 1sfn_A 82 AVGGETRTLREYDYVYLPAGEKHMLTAKTDA 112 (246)
T ss_dssp ECSSCEEEECTTEEEEECTTCCCEEEEEEEE
T ss_pred EECCEEEEECCCCEEEECCCCCEEEEeCCCE
Confidence 3444466677899999999999999998544
No 172
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=53.31 E-value=4.5 Score=41.34 Aligned_cols=47 Identities=11% Similarity=0.128 Sum_probs=34.1
Q ss_pred CCCcccccccCCCCceEecCcCCCCcccHhHHhhhCCCCChhhhhccCCCCCCcc
Q 002330 200 ERIKCHQCMKSERKYVVPCGKCRTKVYCIQCIKQWYPKMSELDVAEICPFCRRNC 254 (935)
Q Consensus 200 ~~~~CHQCrqk~~~~~v~C~~C~r~~FC~~CL~~rY~e~~~edv~w~CP~CRgiC 254 (935)
....|.-|..--.+.++ ..|+ ..||..||..|.... ...||+|+...
T Consensus 207 ~~~~c~i~~~~~~dPv~--~~~g-h~f~~~~i~~~~~~~-----~~~cP~~~~~~ 253 (281)
T 2c2l_A 207 DYLCGKISFELMREPCI--TPSG-ITYDRKDIEEHLQRV-----GHFNPVTRSPL 253 (281)
T ss_dssp STTBCTTTCSBCSSEEE--CSSC-CEEETTHHHHHHHHT-----CSSCTTTCCCC
T ss_pred cccCCcCcCCHhcCCeE--CCCC-CEECHHHHHHHHHHC-----CCCCcCCCCCC
Confidence 45678888877666555 3598 999999999998421 22499998643
No 173
>3es1_A Cupin 2, conserved barrel domain protein; YP_001165807.1; HET: MSE; 1.91A {Novosphingobium aromaticivorans dsm 12ORGANISM_TAXID}
Probab=52.83 E-value=6 Score=39.55 Aligned_cols=35 Identities=14% Similarity=0.092 Sum_probs=26.4
Q ss_pred EEEeecCceeEecCCCccccccccccceecccccCc
Q 002330 843 TFEQKLGEAVFIPAGCPHQVRNLKSCTKVAVDFVSP 878 (935)
Q Consensus 843 tf~Q~lGEAVFIPAGCPHQVRNLkSCIKVAlDFVSP 878 (935)
++.=..||+| ||+|.||+.+|.-.---..+-.++|
T Consensus 119 ~~~L~~GDsi-~~~g~~H~~~N~g~~~ar~l~V~~P 153 (172)
T 3es1_A 119 KRTVRQGGII-VQRGTNHLWRNTTDKPCRIAFILIE 153 (172)
T ss_dssp EEEECTTCEE-EECSCCBEEECCSSSCEEEEEEEEE
T ss_pred EEEECCCCEE-EeCCCcEEEEeCCCCCEEEEEEEcC
Confidence 4556799999 9999999999987654444444554
No 174
>2yw8_A RUN and FYVE domain-containing protein 1; structure genomics, structural genomics, NPPSFA; 3.00A {Homo sapiens} PDB: 2yqm_A
Probab=52.82 E-value=2.5 Score=37.23 Aligned_cols=37 Identities=24% Similarity=0.582 Sum_probs=30.5
Q ss_pred cCCCcccccccCC--CCceEecCcCCCCcccHhHHhhhCC
Q 002330 199 LERIKCHQCMKSE--RKYVVPCGKCRTKVYCIQCIKQWYP 236 (935)
Q Consensus 199 ~~~~~CHQCrqk~--~~~~v~C~~C~r~~FC~~CL~~rY~ 236 (935)
.....|..|.++- ..+...|+.|+ ..||..|...+.+
T Consensus 17 ~~~~~C~~C~~~Fs~~~RrHHCR~CG-~v~C~~Cs~~~~~ 55 (82)
T 2yw8_A 17 DEATHCRQCEKEFSISRRKHHCRNCG-HIFCNTCSSNELA 55 (82)
T ss_dssp CCCCBCTTTCCBCBTTBCCEECTTTC-CEECSGGGCEEEC
T ss_pred ccCCcccCcCCcccCccccccCCCCC-CEEChHHhCCeee
Confidence 3467899999876 36678999999 9999999998754
No 175
>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*
Probab=52.49 E-value=5.8 Score=32.78 Aligned_cols=47 Identities=21% Similarity=0.585 Sum_probs=32.4
Q ss_pred CCCcccccccCCCCceEecCcCCCCc-ccHhHHhhhCCCCChhhhhccCCCCCCc
Q 002330 200 ERIKCHQCMKSERKYVVPCGKCRTKV-YCIQCIKQWYPKMSELDVAEICPFCRRN 253 (935)
Q Consensus 200 ~~~~CHQCrqk~~~~~v~C~~C~r~~-FC~~CL~~rY~e~~~edv~w~CP~CRgi 253 (935)
....|--|.......++.=..|+ .. ||..|+.++.. ..+.||.||..
T Consensus 6 ~~~~C~IC~~~~~~~~~~~~pCg-H~~~C~~C~~~~~~------~~~~CPiCR~~ 53 (63)
T 2vje_B 6 LLKPCSLCEKRPRDGNIIHGRTG-HLVTCFHCARRLKK------AGASCPICKKE 53 (63)
T ss_dssp GGSBCTTTSSSBSCEEEEETTEE-EEEECHHHHHHHHH------TTCBCTTTCCB
T ss_pred cCCCCcccCCcCCCeEEEecCCC-CHhHHHHHHHHHHH------hCCcCCCcCch
Confidence 35678899877655444333566 44 99999997652 23799999973
No 176
>3asl_A E3 ubiquitin-protein ligase UHRF1; histone reader module, epigenetic regulation, LI binding protein complex; 1.41A {Homo sapiens} PDB: 3sou_A 3sow_A* 3sox_A 3zvy_A 2lgg_A 2lgk_A* 2lgl_A 3t6r_A 3zvz_B
Probab=51.18 E-value=6.5 Score=33.85 Aligned_cols=48 Identities=23% Similarity=0.604 Sum_probs=35.7
Q ss_pred cccccccCC-CCceEecCcCCCCcccHhHHhhhCCCCChhhhhccCCCCCC
Q 002330 203 KCHQCMKSE-RKYVVPCGKCRTKVYCIQCIKQWYPKMSELDVAEICPFCRR 252 (935)
Q Consensus 203 ~CHQCrqk~-~~~~v~C~~C~r~~FC~~CL~~rY~e~~~edv~w~CP~CRg 252 (935)
.|+.|++.+ .+.++.|-.|. ..|=..||.--...++. ...|.||.|+.
T Consensus 20 ~C~~C~~~~~~~~ll~CD~C~-~~yH~~Cl~Ppl~~~P~-g~~W~C~~C~~ 68 (70)
T 3asl_A 20 ACHLCGGRQDPDKQLMCDECD-MAFHIYCLDPPLSSVPS-EDEWYCPECRN 68 (70)
T ss_dssp SBTTTCCCSCGGGEEECTTTC-CEEEGGGSSSCCSSCCS-SSCCCCTTTSC
T ss_pred CCcCCCCcCCCCCEEEcCCCC-CceecccCCCCcCCCCC-CCCcCCcCccC
Confidence 678888876 57789999999 77778888754444432 33899999974
No 177
>2puy_A PHD finger protein 21A; PHD finger, histone CODE, BRAF-HDAC complex, transcription; 1.43A {Homo sapiens}
Probab=50.82 E-value=3.6 Score=34.04 Aligned_cols=48 Identities=27% Similarity=0.669 Sum_probs=35.8
Q ss_pred cCCCcccccccCCCCceEecCcCCCCcccHhHHhhhCCCCChhhhhccCCCCC
Q 002330 199 LERIKCHQCMKSERKYVVPCGKCRTKVYCIQCIKQWYPKMSELDVAEICPFCR 251 (935)
Q Consensus 199 ~~~~~CHQCrqk~~~~~v~C~~C~r~~FC~~CL~~rY~e~~~edv~w~CP~CR 251 (935)
.+...|..|++. +.++.|-.|. ..|=..|+..-...++ .-.|.||.|.
T Consensus 3 ~~~~~C~vC~~~--g~ll~Cd~C~-~~fH~~Cl~ppl~~~p--~g~W~C~~C~ 50 (60)
T 2puy_A 3 IHEDFCSVCRKS--GQLLMCDTCS-RVYHLDCLDPPLKTIP--KGMWICPRCQ 50 (60)
T ss_dssp CCCSSCTTTCCC--SSCEECSSSS-CEECGGGSSSCCSSCC--CSCCCCHHHH
T ss_pred CCCCCCcCCCCC--CcEEEcCCCC-cCEECCcCCCCcCCCC--CCceEChhcc
Confidence 356789999976 5699999999 8888888875433332 2379999884
No 178
>2e9q_A 11S globulin subunit beta; cucubitin, pumpkin SEED storage globulin, plant protein; 2.20A {Cucurbita maxima} PDB: 2evx_A
Probab=50.76 E-value=5.5 Score=45.48 Aligned_cols=35 Identities=26% Similarity=0.415 Sum_probs=26.2
Q ss_pred eecCceeEecCCCccccccccccceecccccCccc
Q 002330 846 QKLGEAVFIPAGCPHQVRNLKSCTKVAVDFVSPEN 880 (935)
Q Consensus 846 Q~lGEAVFIPAGCPHQVRNLkSCIKVAlDFVSPEn 880 (935)
=+.||+|+||||.||-..|.-+--=+++-++++.|
T Consensus 131 l~~GDv~~iPaG~~H~~~N~g~~~l~~l~~~d~~n 165 (459)
T 2e9q_A 131 FREGDLLVVPAGVSHWMYNRGQSDLVLIVFADTRN 165 (459)
T ss_dssp EETTEEEEECTTCCEEEEECSSSCEEEEEEEESSS
T ss_pred ecCCCEEEECCCCCEEEEeCCCCCEEEEEEecCCC
Confidence 35699999999999999999865555554444433
No 179
>4b29_A Dimethylsulfoniopropionate lyase; hydrolase, dimethylsulfide, sulphur cycle; 1.72A {Roseovarius nubinhibens ism}
Probab=50.74 E-value=5.1 Score=41.78 Aligned_cols=46 Identities=22% Similarity=0.352 Sum_probs=30.8
Q ss_pred cCCcccCccccCHHHHHHHHHHhCcc-ceEEEeecCceeEecCCCcccccccc
Q 002330 815 IHPIHDQCFYLSSEHKKKLKEEFGVE-PWTFEQKLGEAVFIPAGCPHQVRNLK 866 (935)
Q Consensus 815 ~dPIHDQ~fYLt~ehk~rLkEEyGVe-pWtf~Q~lGEAVFIPAGCPHQVRNLk 866 (935)
.|| ++|.+|+=... -||.|. .=++.=..||.||||+|.||.+|+..
T Consensus 149 sHp-~EEiy~VLsG~-----~e~~v~~g~~~~l~pGd~v~ipsgv~Ha~rt~d 195 (217)
T 4b29_A 149 EHL-PEELYSVVSGR-----ALFHLRNAPDLMLEPGQTRFHPANAPHAMTTLT 195 (217)
T ss_dssp ECS-SEEEEEEEEEC-----EEEEETTSCCEEECTTCEEEECTTCCEEEECCS
T ss_pred CCC-CceEEEEEeCC-----EEEEECCCCEEecCCCCEEEcCCCCceeEEECC
Confidence 566 46655542111 135555 44566789999999999999999743
No 180
>3t7l_A Zinc finger FYVE domain-containing protein 16; structural genomics consortium, SGC, lipid BIND protein, transport protein; 1.09A {Homo sapiens}
Probab=50.58 E-value=5.3 Score=35.83 Aligned_cols=36 Identities=28% Similarity=0.534 Sum_probs=29.7
Q ss_pred cCCCcccccccCC--CCceEecCcCCCCcccHhHHhhhC
Q 002330 199 LERIKCHQCMKSE--RKYVVPCGKCRTKVYCIQCIKQWY 235 (935)
Q Consensus 199 ~~~~~CHQCrqk~--~~~~v~C~~C~r~~FC~~CL~~rY 235 (935)
.....|..|+++= ..+...|+.|+ ..||..|...+-
T Consensus 18 ~~~~~C~~C~~~F~~~~RrhhCr~CG-~v~C~~Cs~~~~ 55 (90)
T 3t7l_A 18 SEAPNCMNCQVKFTFTKRRHHCRACG-KVFCGVCCNRKC 55 (90)
T ss_dssp GGCCBCTTTCCBCCSSSCCEECTTTC-CEECGGGSCEEE
T ss_pred ccCCcCcCCCCcccchhhCccccCCC-CEECCcccCCee
Confidence 3467899999865 35678999999 999999998764
No 181
>3shb_A E3 ubiquitin-protein ligase UHRF1; unmodified histone, methylation, UHRF1, PHD, ligase-NUCL protein complex; 1.80A {Homo sapiens}
Probab=49.59 E-value=5.9 Score=34.92 Aligned_cols=48 Identities=23% Similarity=0.604 Sum_probs=34.7
Q ss_pred cccccccCC-CCceEecCcCCCCcccHhHHhhhCCCCChhhhhccCCCCCC
Q 002330 203 KCHQCMKSE-RKYVVPCGKCRTKVYCIQCIKQWYPKMSELDVAEICPFCRR 252 (935)
Q Consensus 203 ~CHQCrqk~-~~~~v~C~~C~r~~FC~~CL~~rY~e~~~edv~w~CP~CRg 252 (935)
.|+.|++.. .+.++.|-.|. ..|=..||.---..++. ...|.||.|+.
T Consensus 28 ~C~vC~~~~d~~~ll~CD~C~-~~yH~~Cl~PpL~~~P~-g~~W~C~~C~~ 76 (77)
T 3shb_A 28 ACHLCGGRQDPDKQLMCDECD-MAFHIYCLDPPLSSVPS-EDEWYCPECRN 76 (77)
T ss_dssp SBTTTCCCSCGGGEEECTTTC-CEEETTTSSSCCSSCCS-SSCCCCTTTC-
T ss_pred cCCccCCCCCCcceeEeCCCC-CccCcccCCCcccCCCC-CCceECcCccc
Confidence 799999887 46789999999 67777887743333322 33399999985
No 182
>1z2q_A LM5-1; membrane protein, FYVE domain, zinc-finger; NMR {Leishmania major}
Probab=49.53 E-value=6.1 Score=34.89 Aligned_cols=36 Identities=19% Similarity=0.374 Sum_probs=30.1
Q ss_pred cCCCcccccccCC--CCceEecCcCCCCcccHhHHhhhC
Q 002330 199 LERIKCHQCMKSE--RKYVVPCGKCRTKVYCIQCIKQWY 235 (935)
Q Consensus 199 ~~~~~CHQCrqk~--~~~~v~C~~C~r~~FC~~CL~~rY 235 (935)
.....|..|.++= ..+...|+.|+ ..||..|...+.
T Consensus 19 ~~~~~C~~C~~~Fs~~~RrHHCR~CG-~v~C~~Cs~~~~ 56 (84)
T 1z2q_A 19 EDAPACNGCGCVFTTTVRRHHCRNCG-YVLCGDCSRHRA 56 (84)
T ss_dssp TTCCBCTTTCCBCCTTSCCEECTTTC-CEECTGGGCCEE
T ss_pred CCCCCCcCcCCccccchhcccccCCC-cEEChHHhCCeE
Confidence 3567899999875 36678999999 999999998774
No 183
>1vr3_A Acireductone dioxygenase; 13543033, structural genomics, JOI for structural genomics, JCSG, protein structure initiative oxidoreductase; 2.06A {Mus musculus} SCOP: b.82.1.6
Probab=49.15 E-value=10 Score=38.67 Aligned_cols=37 Identities=19% Similarity=0.229 Sum_probs=28.2
Q ss_pred EEEeecCceeEecCCCccccccccccceecccccCcc
Q 002330 843 TFEQKLGEAVFIPAGCPHQVRNLKSCTKVAVDFVSPE 879 (935)
Q Consensus 843 tf~Q~lGEAVFIPAGCPHQVRNLkSCIKVAlDFVSPE 879 (935)
++.=..||.|+||||.||...+-.+--=+|+.|-+++
T Consensus 128 ~i~v~~GDlIiIPaG~~H~f~~~~~~~~~airlF~~~ 164 (191)
T 1vr3_A 128 RISMEKGDMITLPAGIYHRFTLDEKNYVKAMRLFVGE 164 (191)
T ss_dssp EEEEETTEEEEECTTCCEEEEECTTCCEEEEEEESSS
T ss_pred EEEECCCCEEEECcCCcCCcccCCCCCEEEEEEECCC
Confidence 6777899999999999999887655434456666555
No 184
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=48.86 E-value=20 Score=38.56 Aligned_cols=50 Identities=18% Similarity=0.387 Sum_probs=38.3
Q ss_pred cCCCcccccccCCCCceEecCcCCCCcccHhHHhhhCCCCChhhhhccCCC--CCCcc
Q 002330 199 LERIKCHQCMKSERKYVVPCGKCRTKVYCIQCIKQWYPKMSELDVAEICPF--CRRNC 254 (935)
Q Consensus 199 ~~~~~CHQCrqk~~~~~v~C~~C~r~~FC~~CL~~rY~e~~~edv~w~CP~--CRgiC 254 (935)
....+|.-|..--...++ ...|+ ..||..||..|..+. ..+.||+ |+..+
T Consensus 179 ~~el~CPIcl~~f~DPVt-s~~CG-HsFcR~cI~~~~~~~----~~~~CPvtGCr~~l 230 (267)
T 3htk_C 179 KIELTCPITCKPYEAPLI-SRKCN-HVFDRDGIQNYLQGY----TTRDCPQAACSQVV 230 (267)
T ss_dssp BCCSBCTTTSSBCSSEEE-ESSSC-CEEEHHHHHHHSTTC----SCEECSGGGCSCEE
T ss_pred ceeeECcCccCcccCCee-eCCCC-CcccHHHHHHHHHhC----CCCCCCcccccCcC
Confidence 456889999987665554 45799 899999999998642 3489999 99843
No 185
>1sq4_A GLXB, glyoxylate-induced protein; structural genomics, double beta barrel protein, PSI, protei structure initiative; 2.70A {Pseudomonas aeruginosa} SCOP: b.82.1.11
Probab=48.26 E-value=5.5 Score=42.06 Aligned_cols=32 Identities=16% Similarity=0.248 Sum_probs=25.9
Q ss_pred HhCccceEEEeecCceeEecCCCccccccccc
Q 002330 836 EFGVEPWTFEQKLGEAVFIPAGCPHQVRNLKS 867 (935)
Q Consensus 836 EyGVepWtf~Q~lGEAVFIPAGCPHQVRNLkS 867 (935)
+|-+..=++.=..||.+|+|+||||+.+|.-.
T Consensus 224 ~~~~~~~~~~v~~GD~~~~~~~~~h~~~n~g~ 255 (278)
T 1sq4_A 224 VYRLNQDWVEVEAGDFMWLRAFCPQACYSGGP 255 (278)
T ss_dssp EEEETTEEEEEETTCEEEEEESCCEEEECCSS
T ss_pred EEEECCEEEEeCCCCEEEECCCCCEEEEcCCC
Confidence 35555666777899999999999999999654
No 186
>1rc6_A Hypothetical protein YLBA; structural genomics, NYSGXRC, SGX clone NAME 3174C1TCT3B1, T T1521, PSI, protein initiative; 2.60A {Escherichia coli} SCOP: b.82.1.11
Probab=48.10 E-value=8 Score=39.94 Aligned_cols=30 Identities=23% Similarity=0.295 Sum_probs=24.6
Q ss_pred CccceEEEeecCceeEecCCCccccccccc
Q 002330 838 GVEPWTFEQKLGEAVFIPAGCPHQVRNLKS 867 (935)
Q Consensus 838 GVepWtf~Q~lGEAVFIPAGCPHQVRNLkS 867 (935)
-|..=++.=..||++++|||.||+.+|.-+
T Consensus 95 ~~~~~~~~L~~Gd~~~~~~~~~H~~~N~~~ 124 (261)
T 1rc6_A 95 KAEGKTFALSEGGYLYCPPGSLMTFVNAQA 124 (261)
T ss_dssp EETTEEEEEETTEEEEECTTCCCEEEECSS
T ss_pred EECCEEEEECCCCEEEECCCCCEEEEeCCC
Confidence 344456777899999999999999999854
No 187
>4e2q_A Ureidoglycine aminohydrolase; BI-cupin, manganese binding, endoplasmic RET hydrolase; 2.50A {Arabidopsis thaliana} PDB: 4e2s_A
Probab=47.99 E-value=5.8 Score=42.34 Aligned_cols=24 Identities=8% Similarity=0.295 Sum_probs=20.7
Q ss_pred EEEeecCceeEecCCCcccccccc
Q 002330 843 TFEQKLGEAVFIPAGCPHQVRNLK 866 (935)
Q Consensus 843 tf~Q~lGEAVFIPAGCPHQVRNLk 866 (935)
++.=..||++++|||.|||++|-.
T Consensus 110 ~~~L~~Gds~y~p~~~~H~~~N~~ 133 (266)
T 4e2q_A 110 SKKLTVDSYAYLPPNFHHSLDCVE 133 (266)
T ss_dssp CEEECTTEEEEECTTCCCEEEESS
T ss_pred EEEEcCCCEEEECCCCCEEEEeCC
Confidence 455678999999999999999954
No 188
>1x4u_A Zinc finger, FYVE domain containing 27 isoform B; phosphoinositide binding, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=47.73 E-value=5.7 Score=35.06 Aligned_cols=37 Identities=22% Similarity=0.487 Sum_probs=30.3
Q ss_pred cCCCcccccccCC--CCceEecCcCCCCcccHhHHhhhCC
Q 002330 199 LERIKCHQCMKSE--RKYVVPCGKCRTKVYCIQCIKQWYP 236 (935)
Q Consensus 199 ~~~~~CHQCrqk~--~~~~v~C~~C~r~~FC~~CL~~rY~ 236 (935)
.....|..|.++= ..+.-.|+.|+ ..||..|..++.+
T Consensus 12 ~~~~~C~~C~~~F~~~~RrHHCR~CG-~vfC~~Cs~~~~~ 50 (84)
T 1x4u_A 12 NNFGNCTGCSATFSVLKKRRSCSNCG-NSFCSRCCSFKVP 50 (84)
T ss_dssp CCCSSCSSSCCCCCSSSCCEECSSSC-CEECTTTSCEEEC
T ss_pred CCCCcCcCcCCccccchhhhhhcCCC-cEEChhhcCCcee
Confidence 3467899999875 46678999999 9999999887644
No 189
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}
Probab=47.23 E-value=6.1 Score=38.27 Aligned_cols=45 Identities=22% Similarity=0.581 Sum_probs=33.1
Q ss_pred CCCcccccccCCCCceEecCcCCCCcccHhHHhhhCCCCChhhhhccCCCCCC
Q 002330 200 ERIKCHQCMKSERKYVVPCGKCRTKVYCIQCIKQWYPKMSELDVAEICPFCRR 252 (935)
Q Consensus 200 ~~~~CHQCrqk~~~~~v~C~~C~r~~FC~~CL~~rY~e~~~edv~w~CP~CRg 252 (935)
....|--|...-... +.+ .|+ -.||..||.+|... -...||.||.
T Consensus 17 ~~~~C~IC~~~~~~p-v~~-~Cg-H~fC~~Ci~~~~~~-----~~~~CP~Cr~ 61 (170)
T 3hcs_A 17 SKYECPICLMALREA-VQT-PCG-HRFCKACIIKSIRD-----AGHKCPVDNE 61 (170)
T ss_dssp GGGBCTTTCSBCSSE-EEC-TTS-CEEEHHHHHHHHHH-----HCSBCTTTCC
T ss_pred CCCCCCCCChhhcCc-EEC-CCC-CHHHHHHHHHHHHh-----CCCCCCCCcc
Confidence 456899998765544 444 799 99999999999742 1238999875
No 190
>2k16_A Transcription initiation factor TFIID subunit 3; protein, alternative splicing, metal-binding, nucleus, phosphoprotein, transcription regulation; NMR {Mus musculus} PDB: 2k17_A*
Probab=46.71 E-value=11 Score=32.22 Aligned_cols=50 Identities=20% Similarity=0.504 Sum_probs=36.5
Q ss_pred CCCcccccccCCCC-ceEecCcCCCCcccHhHHhhhCCCCChhhhhccCCCCCC
Q 002330 200 ERIKCHQCMKSERK-YVVPCGKCRTKVYCIQCIKQWYPKMSELDVAEICPFCRR 252 (935)
Q Consensus 200 ~~~~CHQCrqk~~~-~~v~C~~C~r~~FC~~CL~~rY~e~~~edv~w~CP~CRg 252 (935)
+...|..|++...+ .++.|-.|. .-|=..|+.-.-... .+..|.||.|+.
T Consensus 17 ~~~~C~~C~~~~~~~~mi~CD~C~-~wfH~~Cv~~~~~~~--~~~~w~C~~C~~ 67 (75)
T 2k16_A 17 QIWICPGCNKPDDGSPMIGCDDCD-DWYHWPCVGIMAAPP--EEMQWFCPKCAN 67 (75)
T ss_dssp EEECBTTTTBCCSSCCEEECSSSS-SEEEHHHHTCSSCCC--SSSCCCCTTTHH
T ss_pred CCcCCCCCCCCCCCCCEEEcCCCC-cccccccCCCCccCC--CCCCEEChhccC
Confidence 35679999988754 689999999 778788887433221 235799999964
No 191
>3c3v_A Arachin ARAH3 isoform; peanut allergen, allergy, glycinin; 1.73A {Arachis hypogaea}
Probab=46.46 E-value=7.6 Score=45.03 Aligned_cols=34 Identities=24% Similarity=0.374 Sum_probs=26.5
Q ss_pred ecCceeEecCCCccccccccccceecccccCccc
Q 002330 847 KLGEAVFIPAGCPHQVRNLKSCTKVAVDFVSPEN 880 (935)
Q Consensus 847 ~lGEAVFIPAGCPHQVRNLkSCIKVAlDFVSPEn 880 (935)
..||+|+||||.||-..|.-+--=||+-++.+-|
T Consensus 131 ~~GDvi~iPaG~~hw~~N~g~~~l~~v~~~d~~n 164 (510)
T 3c3v_A 131 NEGDLIAVPTGVAFWLYNDHDTDVVAVSLTDTNN 164 (510)
T ss_dssp CTTEEEEECTTCEEEEEECSSSCEEEEEEECTTB
T ss_pred cCCCEEEECCCCCEEEEeCCCCCEEEEEEeCCCC
Confidence 5699999999999999999875555555555544
No 192
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B
Probab=46.14 E-value=13 Score=33.67 Aligned_cols=45 Identities=11% Similarity=0.015 Sum_probs=34.5
Q ss_pred CCCcccccccCCCCceEecCcCCCCcccHhHHhhhCCCCChhhhhccCCCCCCc
Q 002330 200 ERIKCHQCMKSERKYVVPCGKCRTKVYCIQCIKQWYPKMSELDVAEICPFCRRN 253 (935)
Q Consensus 200 ~~~~CHQCrqk~~~~~v~C~~C~r~~FC~~CL~~rY~e~~~edv~w~CP~CRgi 253 (935)
....|--|..--.+.++. .|+ ..||..||..|... ...||+|+..
T Consensus 28 ~~~~CpI~~~~m~dPV~~--~cG-htf~r~~I~~~l~~------~~~cP~~~~~ 72 (100)
T 2kre_A 28 DEFRDPLMDTLMTDPVRL--PSG-TIMDRSIILRHLLN------SPTDPFNRQT 72 (100)
T ss_dssp TTTBCTTTCSBCSSEEEE--TTT-EEEEHHHHHHHTTS------CSBCSSSCCB
T ss_pred HhhCCcCccCcccCCeEC--CCC-CEEchHHHHHHHHc------CCCCCCCCCC
Confidence 467888888766665653 488 88999999999864 3589999863
No 193
>1sef_A Conserved hypothetical protein; structural genomics, nysgxrc target T1582, PSI, protein STRU initiative; 2.05A {Enterococcus faecalis} SCOP: b.82.1.11
Probab=46.12 E-value=8.8 Score=40.06 Aligned_cols=30 Identities=13% Similarity=0.080 Sum_probs=24.5
Q ss_pred CccceEEEeecCceeEecCCCccccccccc
Q 002330 838 GVEPWTFEQKLGEAVFIPAGCPHQVRNLKS 867 (935)
Q Consensus 838 GVepWtf~Q~lGEAVFIPAGCPHQVRNLkS 867 (935)
.|..=++.=..||++++|||.||+++|.-+
T Consensus 98 ~~~~~~~~L~~GD~~~~~~~~~H~~~N~~~ 127 (274)
T 1sef_A 98 SDGQETHELEAGGYAYFTPEMKMYLANAQE 127 (274)
T ss_dssp ECSSCEEEEETTEEEEECTTSCCEEEESSS
T ss_pred EECCEEEEECCCCEEEECCCCCEEEEeCCC
Confidence 344446677889999999999999999854
No 194
>1y02_A CARP2, FYVE-ring finger protein sakura; zinc-binding module, phosphoinositide binding, caspase regulation, metal binding protein; 1.80A {Homo sapiens} SCOP: a.140.2.1 g.50.1.1
Probab=45.81 E-value=5.6 Score=37.90 Aligned_cols=37 Identities=22% Similarity=0.432 Sum_probs=27.0
Q ss_pred cCCCcccccccCC--CCceEecCcCCCCcccHhHHhhhCC
Q 002330 199 LERIKCHQCMKSE--RKYVVPCGKCRTKVYCIQCIKQWYP 236 (935)
Q Consensus 199 ~~~~~CHQCrqk~--~~~~v~C~~C~r~~FC~~CL~~rY~ 236 (935)
.....|..|..+= ..+...|++|+ ..||..|..++.+
T Consensus 17 ~~~~~C~~C~~~Fs~~~RkHHCR~CG-~ifC~~Cs~~~~~ 55 (120)
T 1y02_A 17 GLEPSCKSCGAHFANTARKQTCLDCK-KNFCMTCSSQVGN 55 (120)
T ss_dssp ---CCCTTTCCCCSSGGGCEECTTTC-CEECGGGEEC---
T ss_pred cccCcccCcCCccccccccccCCCCC-CeeCHHHhCCCCC
Confidence 3457899999865 35678999999 9999999998765
No 195
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Probab=45.38 E-value=15 Score=33.83 Aligned_cols=28 Identities=29% Similarity=0.978 Sum_probs=22.8
Q ss_pred CcCCCCcccHhHHhhhCCCCChhhhhccCCCCCCc
Q 002330 219 GKCRTKVYCIQCIKQWYPKMSELDVAEICPFCRRN 253 (935)
Q Consensus 219 ~~C~r~~FC~~CL~~rY~e~~~edv~w~CP~CRgi 253 (935)
..|+ ..|+..||..|... ...||.||..
T Consensus 71 ~~C~-H~FH~~Ci~~Wl~~------~~~CP~Cr~~ 98 (106)
T 3dpl_R 71 GVCN-HAFHFHCISRWLKT------RQVCPLDNRE 98 (106)
T ss_dssp ETTS-CEEEHHHHHHHHTT------CSBCSSSCSB
T ss_pred cccC-cEECHHHHHHHHHc------CCcCcCCCCc
Confidence 3588 99999999999753 3589999863
No 196
>2d40_A Z3393, putative gentisate 1,2-dioxygenase; gentisic acid, bicupin, tetramer, montreal- bacterial structural genomics initiative, BSGI; 2.41A {Escherichia coli} SCOP: b.82.1.23
Probab=45.31 E-value=9.8 Score=41.65 Aligned_cols=27 Identities=11% Similarity=0.095 Sum_probs=24.3
Q ss_pred ccceEEEeecCceeEecCCCccccccc
Q 002330 839 VEPWTFEQKLGEAVFIPAGCPHQVRNL 865 (935)
Q Consensus 839 VepWtf~Q~lGEAVFIPAGCPHQVRNL 865 (935)
|.+-+|.=..||+++||+|++||++|-
T Consensus 303 v~~~~~~~~~GD~~~vP~~~~H~~~n~ 329 (354)
T 2d40_A 303 IGNETFSFSAKDIFVVPTWHGVSFQTT 329 (354)
T ss_dssp ETTEEEEEETTCEEEECTTCCEEEEEE
T ss_pred ECCEEEEEcCCCEEEECCCCeEEEEeC
Confidence 457888899999999999999999994
No 197
>4gne_A Histone-lysine N-methyltransferase NSD3; zinc finger, transcription, nuclear protein, transf nuclear protein complex; 1.47A {Homo sapiens} PDB: 4gnd_A 4gnf_A 4gng_A*
Probab=44.52 E-value=11 Score=35.17 Aligned_cols=59 Identities=24% Similarity=0.578 Sum_probs=40.3
Q ss_pred hhhhccCCCcccccccCCCCceEecC--cCCCCcccHhHHhhhCCCCChhhhhccCCCCCCcccCccccccC
Q 002330 194 RQEKELERIKCHQCMKSERKYVVPCG--KCRTKVYCIQCIKQWYPKMSELDVAEICPFCRRNCNCSVCLHTS 263 (935)
Q Consensus 194 rk~~k~~~~~CHQCrqk~~~~~v~C~--~C~r~~FC~~CL~~rY~e~~~edv~w~CP~CRgiCNCs~Clr~~ 263 (935)
.+.+..+...|..|+. .+.++.|- .|. ..|=..||. -.+.+ +-.|.||.| .|..|-+..
T Consensus 8 ~~~~~~~~~~C~~C~~--~G~ll~CD~~~Cp-~~fH~~Cl~--L~~~P--~g~W~Cp~c----~C~~C~k~~ 68 (107)
T 4gne_A 8 TEPKQMHEDYCFQCGD--GGELVMCDKKDCP-KAYHLLCLN--LTQPP--YGKWECPWH----QCDECSSAA 68 (107)
T ss_dssp --CCCSSCSSCTTTCC--CSEEEECCSTTCC-CEECTGGGT--CSSCC--SSCCCCGGG----BCTTTCSBC
T ss_pred CCCcCCCCCCCCcCCC--CCcEeEECCCCCC-cccccccCc--CCcCC--CCCEECCCC----CCCcCCCCC
Confidence 3444567889999984 46799999 699 577778875 22221 346999986 577777654
No 198
>3ask_A E3 ubiquitin-protein ligase UHRF1; histone reader modules, epigenetic regulation, trimethylaion of lysine residue, ligase-DNA binding protein; HET: M3L; 2.90A {Homo sapiens}
Probab=44.43 E-value=6.4 Score=41.28 Aligned_cols=48 Identities=23% Similarity=0.588 Sum_probs=32.3
Q ss_pred cccccccCC-CCceEecCcCCCCcccHhHHhhhCCCCChhhhhccCCCCCC
Q 002330 203 KCHQCMKSE-RKYVVPCGKCRTKVYCIQCIKQWYPKMSELDVAEICPFCRR 252 (935)
Q Consensus 203 ~CHQCrqk~-~~~~v~C~~C~r~~FC~~CL~~rY~e~~~edv~w~CP~CRg 252 (935)
.|..|++.+ .+.++.|-.|. ..|=..||.---..++ +...|.||.|+.
T Consensus 176 ~C~vC~~~~~~~~lL~CD~C~-~~yH~~CL~PPL~~vP-~G~~W~Cp~C~~ 224 (226)
T 3ask_A 176 ACHLCGGRQDPDKQLMCDECD-MAFHIYCLDPPLSSVP-SEDEWYCPECRN 224 (226)
T ss_dssp SCSSSCCCCC--CCEECSSSC-CEECSCC--CCCCSCC-SSSCCCCGGGC-
T ss_pred CCcCCCCCCCCCCeEEcCCCC-cceeCccCCCCcccCC-CCCCCCCcCCcC
Confidence 799999876 46789999999 6777778874443333 233799999974
No 199
>1fxz_A Glycinin G1; proglycinin, legumin, SEED storage protein, plant protein; 2.80A {Glycine max} SCOP: b.82.1.2 b.82.1.2 PDB: 1ud1_A 1ucx_A
Probab=43.93 E-value=8.8 Score=44.02 Aligned_cols=30 Identities=23% Similarity=0.405 Sum_probs=23.2
Q ss_pred EEeecCceeEecCCCccccccccccceecc
Q 002330 844 FEQKLGEAVFIPAGCPHQVRNLKSCTKVAV 873 (935)
Q Consensus 844 f~Q~lGEAVFIPAGCPHQVRNLkSCIKVAl 873 (935)
..=..||+|+||||.||-..|.-+--=|++
T Consensus 115 ~~l~~GDvi~iPaG~~h~~~N~G~~~l~~i 144 (476)
T 1fxz_A 115 YNFREGDLIAVPTGVAWWMYNNEDTPVVAV 144 (476)
T ss_dssp EEECTTEEEEECTTCEEEEEECSSSCEEEE
T ss_pred EEEeCCCEEEECCCCcEEEEeCCCCCEEEE
Confidence 344679999999999999999975433443
No 200
>2e6r_A Jumonji/ARID domain-containing protein 1D; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=43.78 E-value=4.3 Score=36.69 Aligned_cols=52 Identities=21% Similarity=0.525 Sum_probs=36.8
Q ss_pred ccCCCcccccccCC-CCceEecCcCCCCcccHhHHhhhCCCCChhhhhccCCCCCC
Q 002330 198 ELERIKCHQCMKSE-RKYVVPCGKCRTKVYCIQCIKQWYPKMSELDVAEICPFCRR 252 (935)
Q Consensus 198 k~~~~~CHQCrqk~-~~~~v~C~~C~r~~FC~~CL~~rY~e~~~edv~w~CP~CRg 252 (935)
..+...|..|++.. ...++.|-.|. ..|=..||.--...++ .-.|.||.|+.
T Consensus 13 ~~~~~~C~vC~~~~~~~~ll~CD~C~-~~~H~~Cl~Ppl~~~P--~g~W~C~~C~~ 65 (92)
T 2e6r_A 13 FIDSYICQVCSRGDEDDKLLFCDGCD-DNYHIFCLLPPLPEIP--RGIWRCPKCIL 65 (92)
T ss_dssp CCCCCCCSSSCCSGGGGGCEECTTTC-CEECSSSSSSCCSSCC--SSCCCCHHHHH
T ss_pred ccCCCCCccCCCcCCCCCEEEcCCCC-chhccccCCCCcccCC--CCCcCCccCcC
Confidence 35667899999887 46799999999 5676777753332332 23699999853
No 201
>2e6s_A E3 ubiquitin-protein ligase UHRF2; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=43.45 E-value=9.5 Score=33.50 Aligned_cols=48 Identities=23% Similarity=0.578 Sum_probs=34.0
Q ss_pred cccccccCC-CCceEecCcCCCCcccHhHHhhhCCCCChhhhhccCCCCCC
Q 002330 203 KCHQCMKSE-RKYVVPCGKCRTKVYCIQCIKQWYPKMSELDVAEICPFCRR 252 (935)
Q Consensus 203 ~CHQCrqk~-~~~~v~C~~C~r~~FC~~CL~~rY~e~~~edv~w~CP~CRg 252 (935)
.|..|.+.+ .+.++.|-.|. ..|=..||.--...++ +...|.||.|+.
T Consensus 28 ~C~vC~~~~~~~~ll~CD~C~-~~yH~~Cl~Ppl~~~P-~g~~W~C~~C~~ 76 (77)
T 2e6s_A 28 SCRVCGGKHEPNMQLLCDECN-VAYHIYCLNPPLDKVP-EEEYWYCPSCKT 76 (77)
T ss_dssp SCSSSCCCCCSTTEEECSSSC-CEEETTSSSSCCSSCC-CSSCCCCTTTCC
T ss_pred CCcCcCCcCCCCCEEEcCCCC-ccccccccCCCccCCC-CCCCcCCcCccC
Confidence 778888875 57789999999 6677777764333332 223799999974
No 202
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=43.36 E-value=35 Score=29.74 Aligned_cols=49 Identities=16% Similarity=0.441 Sum_probs=36.5
Q ss_pred cCCCcccccccCCCCceEecCcCCCCcccHhHHhhhCCCCChhhhhccCCCCCCc
Q 002330 199 LERIKCHQCMKSERKYVVPCGKCRTKVYCIQCIKQWYPKMSELDVAEICPFCRRN 253 (935)
Q Consensus 199 ~~~~~CHQCrqk~~~~~v~C~~C~r~~FC~~CL~~rY~e~~~edv~w~CP~CRgi 253 (935)
.....|.-|+.--. .-..|..|+ ..|=..||.+|+... -.-.||.||..
T Consensus 13 ~~i~~C~IC~~~i~-~g~~C~~C~-h~fH~~Ci~kWl~~~----~~~~CP~Cr~~ 61 (74)
T 2ct0_A 13 DAVKICNICHSLLI-QGQSCETCG-IRMHLPCVAKYFQSN----AEPRCPHCNDY 61 (74)
T ss_dssp SSSCBCSSSCCBCS-SSEECSSSC-CEECHHHHHHHSTTC----SSCCCTTTCSC
T ss_pred CCCCcCcchhhHcc-cCCccCCCC-chhhHHHHHHHHHhc----CCCCCCCCcCc
Confidence 44567888886654 346899999 889999999999532 12589999864
No 203
>3bu7_A Gentisate 1,2-dioxygenase; cupin domain, oxidoreductase, plasmid; 2.80A {Silicibacter pomeroyi} SCOP: b.82.1.23
Probab=43.12 E-value=11 Score=42.42 Aligned_cols=27 Identities=22% Similarity=0.187 Sum_probs=24.4
Q ss_pred CccceEEEeecCceeEecCCCcccccc
Q 002330 838 GVEPWTFEQKLGEAVFIPAGCPHQVRN 864 (935)
Q Consensus 838 GVepWtf~Q~lGEAVFIPAGCPHQVRN 864 (935)
-|.+=++.-..||+|+||+|..|+++|
T Consensus 158 ~v~G~~~~~~~GD~i~~P~g~~H~~~N 184 (394)
T 3bu7_A 158 IVDGHKVELGANDFVLTPNGTWHEHGI 184 (394)
T ss_dssp EETTEEEEECTTCEEEECTTCCEEEEE
T ss_pred EECCEEEEEcCCCEEEECcCCCEEEEc
Confidence 455668999999999999999999999
No 204
>2arc_A ARAC, arabinose operon regulatory protein; transcription factor, carbohydrate binding, coiled-coil, jelly roll; HET: ARA; 1.50A {Escherichia coli} SCOP: b.82.4.1 PDB: 2aac_A* 1xja_A 2ara_A
Probab=42.66 E-value=14 Score=34.00 Aligned_cols=30 Identities=17% Similarity=0.262 Sum_probs=24.0
Q ss_pred hCccceEEEeecCceeEecCCCcccccccc
Q 002330 837 FGVEPWTFEQKLGEAVFIPAGCPHQVRNLK 866 (935)
Q Consensus 837 yGVepWtf~Q~lGEAVFIPAGCPHQVRNLk 866 (935)
+-|..=++.=..||++|||+|.+|+.++-.
T Consensus 51 ~~i~~~~~~l~~Gd~~~i~p~~~H~~~~~~ 80 (164)
T 2arc_A 51 VKNQGREFVCRPGDILLFPPGEIHHYGRHP 80 (164)
T ss_dssp EEETTEEEEECTTCEEEECTTCCEEEEECT
T ss_pred EEECCEEEEecCCeEEEEcCCCCEEEEeCC
Confidence 344555667789999999999999988764
No 205
>1wff_A Riken cDNA 2810002D23 protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.80.1.1
Probab=41.69 E-value=25 Score=31.87 Aligned_cols=35 Identities=20% Similarity=0.480 Sum_probs=26.8
Q ss_pred cCCCcccccccCCCC-ceEecCcCCCCcccHhHHhhhCCCC
Q 002330 199 LERIKCHQCMKSERK-YVVPCGKCRTKVYCIQCIKQWYPKM 238 (935)
Q Consensus 199 ~~~~~CHQCrqk~~~-~~v~C~~C~r~~FC~~CL~~rY~e~ 238 (935)
....+|+.|+++..- ....|+ |+ ..||. .-||++.
T Consensus 23 ~~~~rC~~C~kkvgl~~~f~Cr-Cg-~~FC~---~HRy~e~ 58 (85)
T 1wff_A 23 KIMKHCFLCGKKTGLATSFECR-CG-NNFCA---SHRYAEA 58 (85)
T ss_dssp CCCCBCSSSCCBCSSSSCEECT-TC-CEECT---TTCSTGG
T ss_pred ccCccchhhCCeecccCCeEcC-CC-CEecc---cCCCccC
Confidence 345789999998754 378996 99 99975 6788864
No 206
>3cjx_A Protein of unknown function with A cupin-like FOL; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 2.60A {Ralstonia eutropha}
Probab=41.42 E-value=12 Score=37.09 Aligned_cols=33 Identities=15% Similarity=0.217 Sum_probs=28.8
Q ss_pred ecCceeEecCCCcccccccc----ccceec-----ccccCcc
Q 002330 847 KLGEAVFIPAGCPHQVRNLK----SCTKVA-----VDFVSPE 879 (935)
Q Consensus 847 ~lGEAVFIPAGCPHQVRNLk----SCIKVA-----lDFVSPE 879 (935)
..||.+++|+|.+|++.+.. -||-++ +-|+.|.
T Consensus 85 ~aGd~~~~P~g~~H~~~a~~~~~~gci~l~v~~GpL~~~~~~ 126 (165)
T 3cjx_A 85 TAGCYLYEPGGSIHQFNTPRDNEGQTEVIFMLSGCNVNFTQD 126 (165)
T ss_dssp ETTEEEEECTTCEECEECCTTCSSCEEEEEEEESCEEEECTT
T ss_pred CCCeEEEeCCCCceeeEeCCCCCCCcEEEEEEeccceecCCC
Confidence 58999999999999999998 897777 6777774
No 207
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}
Probab=39.99 E-value=6.7 Score=37.01 Aligned_cols=26 Identities=27% Similarity=0.957 Sum_probs=0.0
Q ss_pred cCCCCcccHhHHhhhCCCCChhhhhccCCCCCC
Q 002330 220 KCRTKVYCIQCIKQWYPKMSELDVAEICPFCRR 252 (935)
Q Consensus 220 ~C~r~~FC~~CL~~rY~e~~~edv~w~CP~CRg 252 (935)
.|+ ..|+..||..|... ...||.||.
T Consensus 83 ~C~-H~FH~~CI~~Wl~~------~~~CP~Cr~ 108 (117)
T 4a0k_B 83 VCN-HAFHFHCISRWLKT------RQVCPLDNR 108 (117)
T ss_dssp ---------------------------------
T ss_pred CcC-ceEcHHHHHHHHHc------CCcCCCCCC
Confidence 488 89999999999864 357999986
No 208
>2y0o_A Probable D-lyxose ketol-isomerase; carbohydrate metabolism, metal-binding, sugar ISO stress response; HET: MSE; 1.23A {Bacillus subtilis subsp}
Probab=39.75 E-value=11 Score=37.95 Aligned_cols=41 Identities=22% Similarity=0.308 Sum_probs=31.8
Q ss_pred ceE-EEeecCceeEecCCCccccccccccceecccccCccchHH
Q 002330 841 PWT-FEQKLGEAVFIPAGCPHQVRNLKSCTKVAVDFVSPENVDE 883 (935)
Q Consensus 841 pWt-f~Q~lGEAVFIPAGCPHQVRNLkSCIKVAlDFVSPEnV~e 883 (935)
+|+ ++..+||.|.||.|.+|...|.... |.++=||+-|-++
T Consensus 117 a~~~i~L~pGesvtIppg~~H~f~ageeg--vli~EvSt~~dDe 158 (175)
T 2y0o_A 117 VWHEIELEPGGQYTIPPNTKHWFQAGEEG--AVVTEMSSTSTDK 158 (175)
T ss_dssp CCEEEEECTTCEEEECTTCCEEEEEEEEE--EEEEEEEECCCGG
T ss_pred CCcEEEECCCCEEEECCCCcEEEEeCCCC--EEEEEEeCCCCCC
Confidence 344 5899999999999999999996555 6667777766544
No 209
>1wg2_A Zinc finger (AN1-like) family protein; riken structural genomics/proteomics initiative, RSGI, structural genomics, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.80.1.1
Probab=39.39 E-value=20 Score=30.91 Aligned_cols=33 Identities=27% Similarity=0.688 Sum_probs=25.8
Q ss_pred CCcccccccCCCCceEecCcCCCCcccHhHHhhhCCCC
Q 002330 201 RIKCHQCMKSERKYVVPCGKCRTKVYCIQCIKQWYPKM 238 (935)
Q Consensus 201 ~~~CHQCrqk~~~~~v~C~~C~r~~FC~~CL~~rY~e~ 238 (935)
..+|..|+++..-....| .|+ +.||. .-||++.
T Consensus 15 ~~rC~~C~kkvgl~~f~C-rCg-~~FC~---~HR~~e~ 47 (64)
T 1wg2_A 15 NNRCFSCNKKVGVMGFKC-KCG-STFCG---SHRYPEK 47 (64)
T ss_dssp SCSCTTTCCCCTTSCEEC-TTS-CEECS---SSCSSTT
T ss_pred CCcChhhCCcccccCeEe-ecC-CEecc---cCCCccc
Confidence 478999999864446899 799 99975 6788865
No 210
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=38.40 E-value=55 Score=33.65 Aligned_cols=61 Identities=13% Similarity=0.324 Sum_probs=41.5
Q ss_pred hhhhHhhhhhcccCCCcccccccccCCCCc------ccccCcccccccc--ccccCcCCcccchhchHH
Q 002330 301 TQEIEFEASIQRVHSSKVGVSETLCGNDER------VYCNHCATSIIDL--HRSCPKCSYELCLTCCKE 361 (935)
Q Consensus 301 ~~E~EiEAkIqG~~~sei~I~~a~~~~DER------vyCDnCkTSI~D~--HRSC~~CsyDLCL~CC~E 361 (935)
+.+.+-+=|-+|+...+++...+.+..... -.|-.|.++.-=+ -.+|.+|+.-+|-.|+..
T Consensus 129 i~~~Y~~Lk~~G~~FP~~~~~damf~~~~~p~W~~~~~C~~C~~~F~~~~RrhHCR~CG~v~C~~Cs~~ 197 (226)
T 3zyq_A 129 VQDTYQIMKVEGHVFPEFKESDAMFAAERAPDWVDAEECHRCRVQFGVMTRKHHCRACGQIFCGKCSSK 197 (226)
T ss_dssp HHHHHHHHHHHTCCCCCCCGGGGCCCCCCCCCCCCCSBCTTTCCBCBTTBCCEECTTTCCEECTTTCCE
T ss_pred HHHHHHHHHhcCCCcccchhHHHhhhcccccccccCCCCcCcCCCCCccccccccCCCcCEeChhhcCC
Confidence 456666667788887766655554432221 2799998754323 358999999999999874
No 211
>1wfk_A Zinc finger, FYVE domain containing 19; riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Mus musculus} SCOP: g.50.1.1
Probab=38.03 E-value=15 Score=32.95 Aligned_cols=36 Identities=19% Similarity=0.421 Sum_probs=29.6
Q ss_pred cCCCcccccccCC--CCceEecCcCCCCcccHhHHhhhC
Q 002330 199 LERIKCHQCMKSE--RKYVVPCGKCRTKVYCIQCIKQWY 235 (935)
Q Consensus 199 ~~~~~CHQCrqk~--~~~~v~C~~C~r~~FC~~CL~~rY 235 (935)
.....|..|.++- ..+...|+.|+ ..||..|...+.
T Consensus 7 ~~~~~C~~C~~~F~~~~RrHHCR~CG-~vfC~~Cs~~~~ 44 (88)
T 1wfk_A 7 GMESRCYGCAVKFTLFKKEYGCKNCG-RAFCNGCLSFSA 44 (88)
T ss_dssp CCCSBCTTTCCBCCSSSCEEECSSSC-CEEETTTSCEEE
T ss_pred CcCCCCcCcCCcccCccccccCCCCC-CEEChhHcCCce
Confidence 3466899999875 46789999999 999999998764
No 212
>2a20_A Regulating synaptic membrane exocytosis protein 2; zinc-finger domain, metal binding protein; NMR {Rattus norvegicus} PDB: 2cjs_C
Probab=37.69 E-value=2.7 Score=35.90 Aligned_cols=51 Identities=22% Similarity=0.535 Sum_probs=37.2
Q ss_pred ccCCCcccccccCCC--CceEecCcCCCCcccHhHHhhhCCCCChhhhhccCCCCC
Q 002330 198 ELERIKCHQCMKSER--KYVVPCGKCRTKVYCIQCIKQWYPKMSELDVAEICPFCR 251 (935)
Q Consensus 198 k~~~~~CHQCrqk~~--~~~v~C~~C~r~~FC~~CL~~rY~e~~~edv~w~CP~CR 251 (935)
++...+|+-|.+.+. +.--.|.-|+ .+||.+|=-.+- +...-+.|.|-.||
T Consensus 6 ~~d~~~C~iC~KTKFADG~Gh~C~yCk-~r~CaRCGg~v~--lr~~k~~WvC~lC~ 58 (62)
T 2a20_A 6 KGDAPTCGICHKTKFADGCGHNCSYCQ-TKFCARCGGRVS--LRSNKVMWVCNLCR 58 (62)
T ss_dssp SSCCCCCSSSSCSCCCSSCCEEBTTTC-CEECTTSEEEEE--SSTTCEEEEEHHHH
T ss_pred cCCcchhhhhccceeccCCCccccccC-CeeecccCCEee--ecCCeEEEEehhhh
Confidence 466789999997773 4457899999 889999865432 23346789887765
No 213
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=37.25 E-value=13 Score=34.33 Aligned_cols=46 Identities=20% Similarity=0.470 Sum_probs=32.7
Q ss_pred CCceEecCcCCCCcccHhHHhhhCCCCCh--hhhhccCCCCCCcccCcccccc
Q 002330 212 RKYVVPCGKCRTKVYCIQCIKQWYPKMSE--LDVAEICPFCRRNCNCSVCLHT 262 (935)
Q Consensus 212 ~~~~v~C~~C~r~~FC~~CL~~rY~e~~~--edv~w~CP~CRgiCNCs~Clr~ 262 (935)
.+.++.|..|. ..|=..||.... +++. ....|.||.|+ .|.+|.+.
T Consensus 23 ~~~Ll~C~~C~-~~~H~~Cl~~~~-~~~~~~~~~~W~C~~C~---~C~vC~~~ 70 (112)
T 3v43_A 23 PEELISCADCG-NSGHPSCLKFSP-ELTVRVKALRWQCIECK---TCSSCRDQ 70 (112)
T ss_dssp CCCCEECTTTC-CEECHHHHTCCH-HHHHHHHTSCCCCTTTC---CBTTTCCC
T ss_pred chhceEhhhcC-CCCCCchhcCCH-HHHHHhhccccccccCC---ccccccCc
Confidence 45799999999 778888986321 1111 23469999998 58888764
No 214
>2ri7_A Nucleosome-remodeling factor subunit BPTF; zinc finger, alpha-helical bundle, dimethyl-lysine, bromodom chromatin regulator, metal-binding, nucleus; HET: MLY; 1.45A {Homo sapiens} PDB: 2fsa_A* 2f6n_A 2f6j_A* 3qzv_A* 3uv2_A* 3qzt_A* 3qzs_A* 2fui_A 2fuu_A*
Probab=37.19 E-value=8.2 Score=37.76 Aligned_cols=48 Identities=23% Similarity=0.723 Sum_probs=35.5
Q ss_pred cCCCcccccccCC--CCceEecCcCCCCcccHhHHhhhCCCCChhh----hhccCCCCCCc
Q 002330 199 LERIKCHQCMKSE--RKYVVPCGKCRTKVYCIQCIKQWYPKMSELD----VAEICPFCRRN 253 (935)
Q Consensus 199 ~~~~~CHQCrqk~--~~~~v~C~~C~r~~FC~~CL~~rY~e~~~ed----v~w~CP~CRgi 253 (935)
.....| .|++.. .+.++.|-.|. .-|-..|+. ++..+ -.|.||.|+..
T Consensus 6 ~~~~~C-~C~~~~~~~~~mi~Cd~C~-~WfH~~Cv~-----~~~~~~~~~~~~~C~~C~~~ 59 (174)
T 2ri7_A 6 DTKLYC-ICKTPEDESKFYIGCDRCQ-NWYHGRCVG-----ILQSEAELIDEYVCPQCQST 59 (174)
T ss_dssp -CCEET-TTTEECCTTSCEEECTTTC-CEEEHHHHT-----CCHHHHTTCSSCCCHHHHHH
T ss_pred CCCcEe-eCCCCCCCCCCEeECCCCC-chhChhhcC-----CchhhccCccCeecCCCcch
Confidence 456788 898863 46699999999 889999984 33322 36999999763
No 215
>1vq8_T 50S ribosomal protein L24P; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: b.34.5.1 PDB: 1vq4_T* 1vq5_T* 1vq6_T* 1vq7_T* 1s72_T* 1vq9_T* 1vqk_T* 1vql_T* 1vqm_T* 1vqn_T* 1vqo_T* 1vqp_T* 1yhq_T* 1yi2_T* 1yij_T* 1yit_T* 1yj9_T* 1yjn_T* 1yjw_T* 2otj_T* ...
Probab=36.98 E-value=10 Score=36.33 Aligned_cols=42 Identities=21% Similarity=0.362 Sum_probs=36.8
Q ss_pred cCCcccCccccCHHHHHHHHHHhCccceEEEeecCceeEecCCC
Q 002330 815 IHPIHDQCFYLSSEHKKKLKEEFGVEPWTFEQKLGEAVFIPAGC 858 (935)
Q Consensus 815 ~dPIHDQ~fYLt~ehk~rLkEEyGVepWtf~Q~lGEAVFIPAGC 858 (935)
.=|.|...-.+.+.+-+.|+++|||..|.| +-||-|.|=||=
T Consensus 14 ~Ap~h~rrk~msa~LskeLr~ky~vr~~~I--kkGD~V~Vi~G~ 55 (120)
T 1vq8_T 14 RAPLHERHKQVRATLSADLREEYGQRNVRV--NAGDTVEVLRGD 55 (120)
T ss_dssp TCCGGGSGGGGEEEECHHHHHHHTCSEEEC--CTTCEEEECSST
T ss_pred cCCcchhhheeeCcCCHHHHHhhccccccc--cCCCEEEEEecC
Confidence 358899999999999899999999999875 679999999983
No 216
>1uij_A Beta subunit of beta conglycinin; double-stranded beta helix, SEED storage protein, sugar binding protein; 2.50A {Glycine max} SCOP: b.82.1.2 b.82.1.2 PDB: 1ipk_A 1ipj_A*
Probab=36.86 E-value=12 Score=42.10 Aligned_cols=46 Identities=22% Similarity=0.247 Sum_probs=32.6
Q ss_pred cCCcccCccccCHHHHHHHHHHhCc----cceEEEeecCceeEecCCCccccccc
Q 002330 815 IHPIHDQCFYLSSEHKKKLKEEFGV----EPWTFEQKLGEAVFIPAGCPHQVRNL 865 (935)
Q Consensus 815 ~dPIHDQ~fYLt~ehk~rLkEEyGV----epWtf~Q~lGEAVFIPAGCPHQVRNL 865 (935)
+||=.++.+|+-.-.- .+|| ...++.=..||+++||+|.+|-+.|.
T Consensus 65 Hh~~a~E~~yVl~G~g-----~v~~v~~~~~~~~~l~~GDv~~iP~G~~H~~~N~ 114 (416)
T 1uij_A 65 HHADADFLLFVLSGRA-----ILTLVNNDDRDSYNLHPGDAQRIPAGTTYYLVNP 114 (416)
T ss_dssp EEESEEEEEEEEESCE-----EEEEECSSCEEEEEECTTEEEEECTTCEEEEEEC
T ss_pred ccCCCceEEEEEeeEE-----EEEEEECCCCeEEEecCCCEEEECCCCeEEEEec
Confidence 3555566666644321 1343 35667778899999999999999999
No 217
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=36.76 E-value=13 Score=38.32 Aligned_cols=33 Identities=21% Similarity=0.667 Sum_probs=27.6
Q ss_pred CcccccccCC--CCceEecCcCCCCcccHhHHhhhC
Q 002330 202 IKCHQCMKSE--RKYVVPCGKCRTKVYCIQCIKQWY 235 (935)
Q Consensus 202 ~~CHQCrqk~--~~~~v~C~~C~r~~FC~~CL~~rY 235 (935)
..|..|+++= ..+...|++|+ ..||..|..++-
T Consensus 165 ~~C~~C~~~F~~~~RrhHCR~CG-~v~C~~Cs~~~~ 199 (226)
T 3zyq_A 165 EECHRCRVQFGVMTRKHHCRACG-QIFCGKCSSKYS 199 (226)
T ss_dssp SBCTTTCCBCBTTBCCEECTTTC-CEECTTTCCEEE
T ss_pred CCCcCcCCCCCccccccccCCCc-CEeChhhcCCcc
Confidence 4799998765 45678999999 999999998764
No 218
>1wev_A Riken cDNA 1110020M19; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: g.50.1.2
Probab=36.49 E-value=3.7 Score=36.73 Aligned_cols=53 Identities=21% Similarity=0.489 Sum_probs=35.5
Q ss_pred cCCCcccccccCCC---CceEecCcCCCCcccHhHHhhhCCCCC--hhhhhccCCCCCC
Q 002330 199 LERIKCHQCMKSER---KYVVPCGKCRTKVYCIQCIKQWYPKMS--ELDVAEICPFCRR 252 (935)
Q Consensus 199 ~~~~~CHQCrqk~~---~~~v~C~~C~r~~FC~~CL~~rY~e~~--~edv~w~CP~CRg 252 (935)
.....|..|++.+. +.++.|-.|. ..|=..|+.-...... ..+-.|.||.|+.
T Consensus 14 e~~~~C~vC~~~~~~~~~~ll~CD~C~-~~yH~~Cl~Ppl~~~~~~~p~g~W~C~~C~~ 71 (88)
T 1wev_A 14 EMGLACVVCRQMTVASGNQLVECQECH-NLYHQDCHKPQVTDKEVNDPRLVWYCARCTR 71 (88)
T ss_dssp HHCCSCSSSCCCCCCTTCCEEECSSSC-CEEETTTSSSCCCHHHHHCTTCCCCCHHHHH
T ss_pred CCCCcCCCCCCCCCCCCCceEECCCCC-CeEcCccCCCcccccccCCCCCCeeCccccc
Confidence 35678999999864 6799999999 6666666653332110 1133599998854
No 219
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=36.44 E-value=12 Score=38.07 Aligned_cols=34 Identities=26% Similarity=0.614 Sum_probs=28.5
Q ss_pred CCcccccccCC--CCceEecCcCCCCcccHhHHhhhC
Q 002330 201 RIKCHQCMKSE--RKYVVPCGKCRTKVYCIQCIKQWY 235 (935)
Q Consensus 201 ~~~CHQCrqk~--~~~~v~C~~C~r~~FC~~CL~~rY 235 (935)
...|+.|+++= ..+...|+.|+ ..||..|...+.
T Consensus 161 ~~~C~~C~~~F~~~~rrhhCr~CG-~v~C~~Cs~~~~ 196 (220)
T 1dvp_A 161 GRVCHRCRVEFTFTNRKHHCRNCG-QVFCGQCTAKQC 196 (220)
T ss_dssp CSBCTTTCCBCCSSSCCEECTTTC-CEECSTTSCEEE
T ss_pred CCccCCCCCccCCcccccccCCcC-CEEChHHhCCee
Confidence 36899998765 36678999999 999999998765
No 220
>1fxz_A Glycinin G1; proglycinin, legumin, SEED storage protein, plant protein; 2.80A {Glycine max} SCOP: b.82.1.2 b.82.1.2 PDB: 1ud1_A 1ucx_A
Probab=36.30 E-value=15 Score=42.19 Aligned_cols=67 Identities=9% Similarity=0.015 Sum_probs=38.8
Q ss_pred CcccCCcccCccccCHHHHH-HHHHHhCccceEEEeecCceeEecCCCccccccccccceecccccCc
Q 002330 812 EQVIHPIHDQCFYLSSEHKK-KLKEEFGVEPWTFEQKLGEAVFIPAGCPHQVRNLKSCTKVAVDFVSP 878 (935)
Q Consensus 812 ~~v~dPIHDQ~fYLt~ehk~-rLkEEyGVepWtf~Q~lGEAVFIPAGCPHQVRNLkSCIKVAlDFVSP 878 (935)
....||-.++.+|+..-.-+ .+-.+-|-+-.+..=..||.++||+|.||.+.|...-+.+..=|+||
T Consensus 352 ~pH~Hp~a~Ei~yVl~G~~~v~v~~~~G~~~~~~~l~~GDv~viP~G~~H~~~ng~~~l~~l~f~~s~ 419 (476)
T 1fxz_A 352 VPHYNLNANSIIYALNGRALIQVVNCNGERVFDGELQEGRVLIVPQNFVVAARSQSDNFEYVSFKTND 419 (476)
T ss_dssp EEEEETTCCEEEEEEESEEEEEEECTTSCEEEEEEEETTCEEEECTTCEEEEEECSTTEEEEEEESSS
T ss_pred cceECCCCCEEEEEEeCEEEEEEEecCCCEEeeeEEcCCCEEEECCCCeEEEEeCCCCEEEEEEECCC
Confidence 34567766776666543211 11111222223333578999999999999999964444444434455
No 221
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}
Probab=36.24 E-value=15 Score=32.16 Aligned_cols=44 Identities=14% Similarity=0.014 Sum_probs=33.0
Q ss_pred CCCcccccccCCCCceEecCcCCCCcccHhHHhhhCCCCChhhhhccCCCCCC
Q 002330 200 ERIKCHQCMKSERKYVVPCGKCRTKVYCIQCIKQWYPKMSELDVAEICPFCRR 252 (935)
Q Consensus 200 ~~~~CHQCrqk~~~~~v~C~~C~r~~FC~~CL~~rY~e~~~edv~w~CP~CRg 252 (935)
....|--|..--.+.++. .|+ ..||..||..|..+ ...||+|+.
T Consensus 13 ~~~~CpI~~~~m~dPV~~--~cG-htf~r~~I~~~l~~------~~~cP~~~~ 56 (85)
T 2kr4_A 13 DEFRDPLMDTLMTDPVRL--PSG-TVMDRSIILRHLLN------SPTDPFNRQ 56 (85)
T ss_dssp TTTBCTTTCSBCSSEEEC--TTS-CEEEHHHHHHHHHH------CSBCTTTCC
T ss_pred hheECcccCchhcCCeEC--CCC-CEECHHHHHHHHhc------CCCCCCCcC
Confidence 356788887765555543 488 89999999999852 368999985
No 222
>1wen_A Inhibitor of growth family, member 4; ING1-like protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.50.1.2 PDB: 1wes_A
Probab=35.99 E-value=19 Score=31.05 Aligned_cols=47 Identities=19% Similarity=0.579 Sum_probs=33.1
Q ss_pred CCCcccccccCCCCceEecCc--CCCCcccHhHHhhhCCCCChh-hhhccCCCCCC
Q 002330 200 ERIKCHQCMKSERKYVVPCGK--CRTKVYCIQCIKQWYPKMSEL-DVAEICPFCRR 252 (935)
Q Consensus 200 ~~~~CHQCrqk~~~~~v~C~~--C~r~~FC~~CL~~rY~e~~~e-dv~w~CP~CRg 252 (935)
....| -|++...+.++.|-+ |.+.-|=..|+. ++.. .-.|.||.|+.
T Consensus 15 ~~~~C-~C~~~~~g~MI~CD~~~C~~~wfH~~Cvg-----l~~~p~g~w~Cp~C~~ 64 (71)
T 1wen_A 15 EPTYC-LCHQVSYGEMIGCDNPDCSIEWFHFACVG-----LTTKPRGKWFCPRCSQ 64 (71)
T ss_dssp SCCCS-TTCCCSCSSEECCSCSSCSCCCEETTTTT-----CSSCCSSCCCCTTTSS
T ss_pred CCCEE-ECCCCCCCCEeEeeCCCCCCccEecccCC-----cCcCCCCCEECCCCCc
Confidence 45778 699877788999999 775456566665 2221 24699999964
No 223
>1vfy_A Phosphatidylinositol-3-phosphate binding FYVE domain of protein VPS27; endosome maturation, intracellular trafficking; 1.15A {Saccharomyces cerevisiae} SCOP: g.50.1.1
Probab=35.77 E-value=17 Score=31.14 Aligned_cols=33 Identities=21% Similarity=0.396 Sum_probs=27.5
Q ss_pred CcccccccCC--CCceEecCcCCCCcccHhHHhhhC
Q 002330 202 IKCHQCMKSE--RKYVVPCGKCRTKVYCIQCIKQWY 235 (935)
Q Consensus 202 ~~CHQCrqk~--~~~~v~C~~C~r~~FC~~CL~~rY 235 (935)
..|..|.++= ..+...|+.|+ ..||..|..++.
T Consensus 12 ~~C~~C~~~F~~~~RrHHCR~CG-~v~C~~Cs~~~~ 46 (73)
T 1vfy_A 12 DACMICSKKFSLLNRKHHCRSCG-GVFCQEHSSNSI 46 (73)
T ss_dssp SBCTTTCCBCBTTBCCEECTTTC-CEECGGGSCEEE
T ss_pred CcccCCCCccCCccccccCCCCC-EEEcccccCCeE
Confidence 4799999875 45679999999 999999997664
No 224
>3j21_U 50S ribosomal protein L24P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=33.78 E-value=12 Score=35.75 Aligned_cols=40 Identities=25% Similarity=0.462 Sum_probs=35.8
Q ss_pred CCcccCccccCHHHHHHHHHHhCccceEEEeecCceeEecCC
Q 002330 816 HPIHDQCFYLSSEHKKKLKEEFGVEPWTFEQKLGEAVFIPAG 857 (935)
Q Consensus 816 dPIHDQ~fYLt~ehk~rLkEEyGVepWtf~Q~lGEAVFIPAG 857 (935)
=|.|...-++.+.+=+.|+++|||.-|.| +-||-|.|=+|
T Consensus 18 Ap~h~r~k~msa~LSkeLR~ky~~r~~~I--kkGD~V~Vi~G 57 (121)
T 3j21_U 18 APLHVRQKLMSAPLSRELREKYKVRNLPV--RVGDKVRIMRG 57 (121)
T ss_dssp CCTTGGGGGSEEEBCHHHHHHTCCSEEEC--CSSSEEEECSS
T ss_pred CCcchhhhhhcCcCCHHHHHHhCCccccc--ccCCEEEEeec
Confidence 47888888888888889999999999988 57999999998
No 225
>3mpx_A FYVE, rhogef and PH domain-containing protein 5; structural genomics consortium, DH domain, SGC, L binding protein; 2.80A {Homo sapiens}
Probab=32.22 E-value=9.6 Score=41.90 Aligned_cols=37 Identities=24% Similarity=0.558 Sum_probs=0.0
Q ss_pred cCCCcccccccCC--CCceEecCcCCCCcccHhHHhhhCC
Q 002330 199 LERIKCHQCMKSE--RKYVVPCGKCRTKVYCIQCIKQWYP 236 (935)
Q Consensus 199 ~~~~~CHQCrqk~--~~~~v~C~~C~r~~FC~~CL~~rY~ 236 (935)
.....|..|+..- ..+...|+.|+ ..||..|..++.+
T Consensus 373 ~~~~~c~~c~~~f~~~~r~h~Cr~Cg-~~~C~~Cs~~~~~ 411 (434)
T 3mpx_A 373 THVMMCMNCGCDFSLTLRRHHCHACG-KIVCRNCSRNKYP 411 (434)
T ss_dssp ----------------------------------------
T ss_pred ccCCcCCCcCCCCCCcchhhhcccCc-CEeehhhCCCeee
Confidence 4467899999865 34568999999 8999999998875
No 226
>2ea7_A 7S globulin-1; beta barrel, cupin superfamily, plant protein; 1.80A {Vigna angularis} PDB: 2eaa_A* 2cv6_A 1uik_A
Probab=31.72 E-value=19 Score=40.65 Aligned_cols=26 Identities=27% Similarity=0.254 Sum_probs=23.1
Q ss_pred ceEEEeecCceeEecCCCcccccccc
Q 002330 841 PWTFEQKLGEAVFIPAGCPHQVRNLK 866 (935)
Q Consensus 841 pWtf~Q~lGEAVFIPAGCPHQVRNLk 866 (935)
..++.=..||+++||+|.+|.+.|.-
T Consensus 102 ~~~~~l~~GDv~~iP~G~~H~~~N~g 127 (434)
T 2ea7_A 102 RDSYILEQGHAQKIPAGTTFFLVNPD 127 (434)
T ss_dssp EEEEEEETTEEEEECTTCEEEEEECC
T ss_pred CEEEEeCCCCEEEECCCccEEEEeCC
Confidence 45777788999999999999999995
No 227
>3c3v_A Arachin ARAH3 isoform; peanut allergen, allergy, glycinin; 1.73A {Arachis hypogaea}
Probab=31.24 E-value=20 Score=41.64 Aligned_cols=102 Identities=9% Similarity=-0.010 Sum_probs=55.7
Q ss_pred CCCceEEEeecCCChhHHHHHHHHHHHhhccccCCCCCcccCCcccCccccCHHHHH-HHHHHhCccceEEEeecCceeE
Q 002330 775 ESGGALWDIFRRQDVPKLEAYLRKHFKEFRHVYCSPVEQVIHPIHDQCFYLSSEHKK-KLKEEFGVEPWTFEQKLGEAVF 853 (935)
Q Consensus 775 ~~~GAlWDIFRreDvpKLreyL~kh~~Ef~h~~~~pv~~v~dPIHDQ~fYLt~ehk~-rLkEEyGVepWtf~Q~lGEAVF 853 (935)
..+|.+.-+... +.|-|.. |.--...+....+.-+....||-.++.+|+..-.-+ .+-.+-|-+-.+..=..||.++
T Consensus 351 ~~gG~v~~~~~~-~fP~L~~-l~is~a~v~L~PG~~~~pH~Hp~a~Ei~yVl~G~~~v~vv~~~G~~~~~~~l~~GDv~v 428 (510)
T 3c3v_A 351 PQAGSLKTANEL-NLLILRW-LGLSAEYGNLYRNALFVPHYNTNAHSIIYALRGRAHVQVVDSNGNRVYDEELQEGHVLV 428 (510)
T ss_dssp TTTEEEEEECTT-TSTTHHH-HTCEEEEEEEETTCEEEEEEESSCCEEEEEEESEEEEEEECTTSCEEEEEEEETTCEEE
T ss_pred CCCeEEEEeccc-cCccccc-ceEEEEEEEecCCceecceECCCCCEEEEEEeCEEEEEEEeCCCCEEEeEEEcCCcEEE
Confidence 457777777664 5777732 110001111122222345678877888777554211 1111122222333357899999
Q ss_pred ecCCCccccccccccceecccccCc
Q 002330 854 IPAGCPHQVRNLKSCTKVAVDFVSP 878 (935)
Q Consensus 854 IPAGCPHQVRNLkSCIKVAlDFVSP 878 (935)
||+|.||-+.|...-+.+..=|+|+
T Consensus 429 iP~G~~H~~~Ng~e~l~~l~f~~s~ 453 (510)
T 3c3v_A 429 VPQNFAVAGKSQSDNFEYVAFKTDS 453 (510)
T ss_dssp ECTTCEEEEEECSSEEEEEEEESSS
T ss_pred ECCCCeEEEEeCCCCEEEEEEECCC
Confidence 9999999999964444444333344
No 228
>2yt5_A Metal-response element-binding transcription factor 2; zinc-regulated factor 1, ZIRF1, metal-response element DNA-binding protein M96; NMR {Mus musculus}
Probab=31.22 E-value=5.5 Score=33.25 Aligned_cols=49 Identities=22% Similarity=0.432 Sum_probs=34.0
Q ss_pred cCCCcccccccCC---CCceEecCcCCCCcccHhHHhhhCCCCChh----hhhccCCCCC
Q 002330 199 LERIKCHQCMKSE---RKYVVPCGKCRTKVYCIQCIKQWYPKMSEL----DVAEICPFCR 251 (935)
Q Consensus 199 ~~~~~CHQCrqk~---~~~~v~C~~C~r~~FC~~CL~~rY~e~~~e----dv~w~CP~CR 251 (935)
++...|..|++.. .+.++.|-.|. ..|=..|+.- -++.+ +-.|.||.|.
T Consensus 4 ~~~~~C~vC~~~~~~~~~~ll~Cd~C~-~~~H~~C~~p---~l~~~~~~p~~~W~C~~C~ 59 (66)
T 2yt5_A 4 GSSGVCTICQEEYSEAPNEMVICDKCG-QGYHQLCHTP---HIDSSVIDSDEKWLCRQCV 59 (66)
T ss_dssp CCCCCBSSSCCCCCBTTBCEEECSSSC-CEEETTTSSS---CCCHHHHHSSCCCCCHHHH
T ss_pred CCCCCCCCCCCCCCCCCCCEEECCCCC-hHHHhhhCCC---cccccccCCCCCEECCCCc
Confidence 5678899999874 37899999999 5555555543 23332 2359999885
No 229
>1wfh_A Zinc finger (AN1-like) family protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: g.80.1.1
Probab=31.21 E-value=24 Score=30.50 Aligned_cols=33 Identities=24% Similarity=0.645 Sum_probs=25.8
Q ss_pred CCcccccccCCCCceEecCcCCCCcccHhHHhhhCCCC
Q 002330 201 RIKCHQCMKSERKYVVPCGKCRTKVYCIQCIKQWYPKM 238 (935)
Q Consensus 201 ~~~CHQCrqk~~~~~v~C~~C~r~~FC~~CL~~rY~e~ 238 (935)
..+|..|+++.--....| .|+ ..||. .-||++.
T Consensus 15 ~~rC~~C~kkvgl~~f~C-rCg-~~FC~---~HRy~e~ 47 (64)
T 1wfh_A 15 PNRCTVCRKRVGLTGFMC-RCG-TTFCG---SHRYPEV 47 (64)
T ss_dssp CCCCTTTCCCCCTTCEEC-SSS-CEECT---TTCSTTT
T ss_pred CCcChhhCCccCccCEEe-ecC-CEecc---ccCCccc
Confidence 478999999865446899 699 99975 6788865
No 230
>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=31.15 E-value=13 Score=32.67 Aligned_cols=51 Identities=22% Similarity=0.582 Sum_probs=33.2
Q ss_pred CCcccccccCCCCc-eEecCcCCCCcccHhHHhhhCCCCChhh--hhccCCC--CCC
Q 002330 201 RIKCHQCMKSERKY-VVPCGKCRTKVYCIQCIKQWYPKMSELD--VAEICPF--CRR 252 (935)
Q Consensus 201 ~~~CHQCrqk~~~~-~v~C~~C~r~~FC~~CL~~rY~e~~~ed--v~w~CP~--CRg 252 (935)
..+|--|...-... .+.-..|+ ..||..||..+......+. ....||. |+.
T Consensus 5 ~~~C~IC~~~~~~~~~~~l~~Cg-H~FC~~Cl~~~~~~~i~~g~~~~i~CP~~~C~~ 60 (94)
T 1wim_A 5 SSGCKLCLGEYPVEQMTTIAQCQ-CIFCTLCLKQYVELLIKEGLETAISCPDAACPK 60 (94)
T ss_dssp BCCCSSSCCCCBGGGEEEETTTT-EEEEHHHHHHHHHHHHHHCSCCCEECSCTTCSS
T ss_pred CcCCcccCcccccccceEcCCCC-CcccHHHHHHHHHHHhhcCCcccccCccccCCC
Confidence 45677787554333 33334699 9999999999875332222 2478998 765
No 231
>1v5n_A PDI-like hypothetical protein AT1G60420; DC1 domain, zinc binding domain, PDI-like protein, structural genomics; NMR {Arabidopsis thaliana} SCOP: g.49.1.3
Probab=30.88 E-value=17 Score=32.64 Aligned_cols=31 Identities=19% Similarity=0.564 Sum_probs=28.3
Q ss_pred cccccCccccccccccccCcCCcccchhchH
Q 002330 330 RVYCNHCATSIIDLHRSCPKCSYELCLTCCK 360 (935)
Q Consensus 330 RvyCDnCkTSI~D~HRSC~~CsyDLCL~CC~ 360 (935)
...||.|...+..+.-.|..|.|+|=+.|-.
T Consensus 47 ~~~C~~C~~~~~~~~Y~C~~C~f~lH~~Ca~ 77 (89)
T 1v5n_A 47 VYTCDKCEEEGTIWSYHCDECDFDLHAKCAL 77 (89)
T ss_dssp SCCCTTTSCCCCSCEEECTTTCCCCCHHHHH
T ss_pred CeEeCCCCCcCCCcEEEcCCCCCeEcHHhcC
Confidence 4679999999999999999999999999974
No 232
>2cav_A Protein (canavalin); vicilin, 7S SEED protein, domain duplication, swiss roll, PL protein; 2.00A {Canavalia ensiformis} SCOP: b.82.1.2 b.82.1.2 PDB: 2cau_A 1cau_B 1cav_B 1caw_B 1cax_B
Probab=29.50 E-value=25 Score=39.95 Aligned_cols=27 Identities=30% Similarity=0.377 Sum_probs=23.4
Q ss_pred eEEEeecCceeEecCCCcccccccc-cc
Q 002330 842 WTFEQKLGEAVFIPAGCPHQVRNLK-SC 868 (935)
Q Consensus 842 Wtf~Q~lGEAVFIPAGCPHQVRNLk-SC 868 (935)
.++.=+.||.++||+|.+|.+.|.- ++
T Consensus 128 ~~~~l~~GDv~~~P~G~~H~~~N~g~~~ 155 (445)
T 2cav_A 128 DTYKLDQGDAIKIQAGTPFYLINPDNNQ 155 (445)
T ss_dssp EEEEEETTEEEEECTTCCEEEEECCSSC
T ss_pred EEEEecCCCEEEECCCCcEEEEECCCCC
Confidence 4677788999999999999999996 44
No 233
>2vrw_B P95VAV, VAV1, proto-oncogene VAV; lipoprotein, GTP-binding, metal-binding, phosphoprotein, exchange factor, RAC, GTPase, membrane domain; 1.85A {Mus musculus} PDB: 3bji_A 1f5x_A
Probab=29.11 E-value=29 Score=37.93 Aligned_cols=38 Identities=16% Similarity=0.389 Sum_probs=29.7
Q ss_pred CCCCcccccCcccccccc-cc--ccCcCCcccchhchHHhh
Q 002330 326 GNDERVYCNHCATSIIDL-HR--SCPKCSYELCLTCCKEIC 363 (935)
Q Consensus 326 ~~DERvyCDnCkTSI~D~-HR--SC~~CsyDLCL~CC~ELR 363 (935)
......+|++|...+.-+ .| .|..|++-+|-.|..-+.
T Consensus 353 ~~~~~t~C~~C~~~~~g~~~qg~~C~~C~~~~h~~C~~~~~ 393 (406)
T 2vrw_B 353 SFEETTSCKACQMLLRGTFYQGYRCYRCRAPAHKECLGRVP 393 (406)
T ss_dssp CCSSCCBCTTTCCBCCSSSSCEEEETTTCCEECGGGGGGSC
T ss_pred cCCCCCCCccccchhceeCCCCCCCCCCcCccchhhhhhCC
Confidence 345667999999988633 22 599999999999988665
No 234
>2zet_C Melanophilin; complex, GTP-binding protein, GTPase, G-protein, RAB, RAB27B, effector, SLP homology domain, acetylation, lipoprotein, membrane; HET: GTP; 3.00A {Mus musculus}
Probab=28.89 E-value=16 Score=36.07 Aligned_cols=35 Identities=23% Similarity=0.691 Sum_probs=30.0
Q ss_pred CcccccCcccc---ccccccccCcCCcccchhchHHhh
Q 002330 329 ERVYCNHCATS---IIDLHRSCPKCSYELCLTCCKEIC 363 (935)
Q Consensus 329 ERvyCDnCkTS---I~D~HRSC~~CsyDLCL~CC~ELR 363 (935)
..-.|.+|..+ +++--+-|..|.+-+|-.|+..++
T Consensus 67 ~~~~C~~C~~~fg~l~~~g~~C~~C~~~VC~~C~~~~~ 104 (153)
T 2zet_C 67 NETHCARCLQPYRLLLNSRRQCLECSLFVCKSCSHAHP 104 (153)
T ss_dssp GGTBCTTTCCBGGGCSSCCEECTTTCCEECGGGEECCS
T ss_pred CCccchhhcCccccccCCCCcCCCCCchhhcccccccC
Confidence 45689999998 788899999999999999995554
No 235
>1j58_A YVRK protein; cupin, decarboxyklase, oxalate, manganese, formate, metal BI protein; 1.75A {Bacillus subtilis} SCOP: b.82.1.2 PDB: 1l3j_A 1uw8_A 2uyb_A 2uy9_A 2uy8_A 2v09_A 2uya_A 3s0m_A
Probab=28.76 E-value=26 Score=37.92 Aligned_cols=25 Identities=24% Similarity=0.549 Sum_probs=22.3
Q ss_pred EEEeecCceeEecCCCccccccccc
Q 002330 843 TFEQKLGEAVFIPAGCPHQVRNLKS 867 (935)
Q Consensus 843 tf~Q~lGEAVFIPAGCPHQVRNLkS 867 (935)
++.=..||.++||+|.+|.++|...
T Consensus 123 ~~~l~~GD~~~ip~g~~H~~~n~~~ 147 (385)
T 1j58_A 123 IDDVGEGDLWYFPSGLPHSIQALEE 147 (385)
T ss_dssp EEEEETTEEEEECTTCCEEEEEEEE
T ss_pred EEEeCCCCEEEECCCCeEEEEECCC
Confidence 5577899999999999999999865
No 236
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=28.72 E-value=44 Score=34.90 Aligned_cols=49 Identities=16% Similarity=0.441 Sum_probs=38.1
Q ss_pred cCCCcccccccCCCCceEecCcCCCCcccHhHHhhhCCCCChhhhhccCCCCCCc
Q 002330 199 LERIKCHQCMKSERKYVVPCGKCRTKVYCIQCIKQWYPKMSELDVAEICPFCRRN 253 (935)
Q Consensus 199 ~~~~~CHQCrqk~~~~~v~C~~C~r~~FC~~CL~~rY~e~~~edv~w~CP~CRgi 253 (935)
+.-..|..|+.--. .-..|.+|+ .+|=..|+.+|+... ..-.||.|...
T Consensus 178 ~~i~~C~iC~~iv~-~g~~C~~C~-~~~H~~C~~~~~~~~----~~~~CP~C~~~ 226 (238)
T 3nw0_A 178 DAVKICNICHSLLI-QGQSCETCG-IRMHLPCVAKYFQSN----AEPRCPHCNDY 226 (238)
T ss_dssp TTCCBCTTTCSBCS-SCEECSSSC-CEECHHHHHHHTTTC----SSCBCTTTCCB
T ss_pred CCCCcCcchhhHHh-CCcccCccC-hHHHHHHHHHHHHhC----CCCCCCCCCCC
Confidence 45789999997765 357999999 889999999998532 23589987763
No 237
>2o1q_A Putative acetyl/propionyl-COA carboxylase, alpha; putative acetylacetone dioxygenase, structural genomics; HET: MSE PG4; 1.50A {Methylibium petroleiphilum} SCOP: b.82.1.21
Probab=28.49 E-value=20 Score=34.08 Aligned_cols=54 Identities=11% Similarity=-0.013 Sum_probs=33.7
Q ss_pred cccCCcccCccccCHHHHHHHHHHhCccc--eEEEeecCceeEecCCCccc-cccccccceec
Q 002330 813 QVIHPIHDQCFYLSSEHKKKLKEEFGVEP--WTFEQKLGEAVFIPAGCPHQ-VRNLKSCTKVA 872 (935)
Q Consensus 813 ~v~dPIHDQ~fYLt~ehk~rLkEEyGVep--Wtf~Q~lGEAVFIPAGCPHQ-VRNLkSCIKVA 872 (935)
...|| +.+.+|+=.--- ..+-|-.+ |++ ..||.+++|+|.+|+ +.+...|+=+.
T Consensus 59 ~H~H~-~~ee~~VL~G~~---~~~~g~~~~~~~~--~~Gd~~~~p~g~~H~p~~~~e~~~~l~ 115 (145)
T 2o1q_A 59 AHVHV-GPGEYFLTKGKM---DVRGGKAAGGDTA--IAPGYGYESANARHDKTEFPVASEFYM 115 (145)
T ss_dssp CEEES-SCEEEEEEEEEE---EETTCGGGTSEEE--ESSEEEEECTTCEESCCEEEEEEEEEE
T ss_pred ccCCC-CCEEEEEEEeEE---EEcCCCEecceEe--CCCEEEEECcCCccCCeECCCCeEEEE
Confidence 44566 555555432211 12223333 444 689999999999999 88888886443
No 238
>2d5f_A Glycinin A3B4 subunit; soybean, globulin, 11S,SEED storage protein, plant; 1.90A {Glycine max} PDB: 2d5h_A 1od5_A
Probab=27.90 E-value=15 Score=42.38 Aligned_cols=121 Identities=11% Similarity=0.107 Sum_probs=63.4
Q ss_pred CCCceEEEeecCCChhHHHHHHHHHHHhhccccCCCCCcccCCcccCccccCHHHHH-HHHHHhCccceEEEeecCceeE
Q 002330 775 ESGGALWDIFRRQDVPKLEAYLRKHFKEFRHVYCSPVEQVIHPIHDQCFYLSSEHKK-KLKEEFGVEPWTFEQKLGEAVF 853 (935)
Q Consensus 775 ~~~GAlWDIFRreDvpKLreyL~kh~~Ef~h~~~~pv~~v~dPIHDQ~fYLt~ehk~-rLkEEyGVepWtf~Q~lGEAVF 853 (935)
..+|.+.-+... +.|-|.. |.--...+....+.-.....||=.++.+|+..-.-+ .+-.+.|-+-.+..=..||.++
T Consensus 346 ~~gG~v~~~~~~-~~P~L~~-lgls~a~v~l~pG~~~~pH~Hp~a~Ei~yVl~G~~~v~v~~~~g~~~~~~~l~~GDv~v 423 (493)
T 2d5f_A 346 PKAGRISTLNSL-TLPALRQ-FGLSAQYVVLYRNGIYSPHWNLNANSVIYVTRGKGRVRVVNAQGNAVFDGELRRGQLLV 423 (493)
T ss_dssp TTTEEEEEESTT-TSTTHHH-HTCEEEEEEECTTCEEEEEEESSCCEEEEEEEEEEEEEEECTTSCEEEEEEEETTCEEE
T ss_pred CCCeEEEEeccc-cCccccc-cceEEEEEEccCCceeeeeECCCCCEEEEEEeceEEEEEEcCCCCEEEeEEEcCCCEEE
Confidence 456777777654 6777632 110111111112222344578877787776544211 1111122222233457899999
Q ss_pred ecCCCccccccccccceecccccCccchHHHHHHHHHhhcCCcccc
Q 002330 854 IPAGCPHQVRNLKSCTKVAVDFVSPENVDECLRLTKEFRLLPKNHR 899 (935)
Q Consensus 854 IPAGCPHQVRNLkSCIKVAlDFVSPEnV~eC~rLteEfR~Lp~~H~ 899 (935)
||+|.||...|...-..+..=|.|+..-..- |+.=|+.+|.+-.
T Consensus 424 vP~G~~H~~~n~~e~~~~l~~~ts~~p~~~~--l~s~~~~~p~eVl 467 (493)
T 2d5f_A 424 VPQNFVVAEQGGEQGLEYVVFKTHHNAVSSY--IKDVFRAIPSEVL 467 (493)
T ss_dssp ECTTCEEEEEEEEEEEEEEEEESSTTCCEEE--HHHHHHHSCHHHH
T ss_pred ECCCCeEeeeeCCCCEEEEEEECCCCCccee--HHHHHHhCCHHHH
Confidence 9999999999976444443333232221111 2666777776543
No 239
>1xwh_A Autoimmune regulator; PHD domain, Zn binding domain, apeced, nucleosome, E3 ligase, transcription; NMR {Homo sapiens} PDB: 2ke1_A 2kft_A
Probab=27.48 E-value=13 Score=31.33 Aligned_cols=48 Identities=15% Similarity=0.464 Sum_probs=34.5
Q ss_pred cCCCcccccccCCCCceEecCcCCCCcccHhHHhhhCCCCChhhhhccCCCCC
Q 002330 199 LERIKCHQCMKSERKYVVPCGKCRTKVYCIQCIKQWYPKMSELDVAEICPFCR 251 (935)
Q Consensus 199 ~~~~~CHQCrqk~~~~~v~C~~C~r~~FC~~CL~~rY~e~~~edv~w~CP~CR 251 (935)
.+...|..|.+. +.++.|-.|. ..|=..||..--..++ .-.|.||.|.
T Consensus 6 ~~~~~C~vC~~~--g~ll~CD~C~-~~fH~~Cl~ppl~~~P--~g~W~C~~C~ 53 (66)
T 1xwh_A 6 KNEDECAVCRDG--GELICCDGCP-RAFHLACLSPPLREIP--SGTWRCSSCL 53 (66)
T ss_dssp SCCCSBSSSSCC--SSCEECSSCC-CEECTTTSSSCCSSCC--SSCCCCHHHH
T ss_pred CCCCCCccCCCC--CCEEEcCCCC-hhhcccccCCCcCcCC--CCCeECcccc
Confidence 456789999875 5699999999 6787788764332222 2469999885
No 240
>1wem_A Death associated transcription factor 1; structural genomics, PHD domain, death inducer- obliterator 1(DIO-1); NMR {Mus musculus} SCOP: g.50.1.2
Probab=27.13 E-value=40 Score=28.91 Aligned_cols=46 Identities=24% Similarity=0.740 Sum_probs=32.1
Q ss_pred CCCcccccccCCC-CceEecCcCCCCcccHhHHhhhCCCCChh--------hhhccCCCCCC
Q 002330 200 ERIKCHQCMKSER-KYVVPCGKCRTKVYCIQCIKQWYPKMSEL--------DVAEICPFCRR 252 (935)
Q Consensus 200 ~~~~CHQCrqk~~-~~~v~C~~C~r~~FC~~CL~~rY~e~~~e--------dv~w~CP~CRg 252 (935)
....| -|++... ..++.|-.|. .-|=..|+. ++.+ ...|.||.|+.
T Consensus 15 ~~~~C-~C~~~~~~~~MI~Cd~C~-~WfH~~Cvg-----l~~~~~~~l~~~~~~~~C~~C~~ 69 (76)
T 1wem_A 15 NALYC-ICRQPHNNRFMICCDRCE-EWFHGDCVG-----ISEARGRLLERNGEDYICPNCTI 69 (76)
T ss_dssp TCCCS-TTCCCCCSSCEEECSSSC-CEEEHHHHS-----CCHHHHHHHHHHTCCCCCHHHHH
T ss_pred CCCEE-ECCCccCCCCEEEeCCCC-CcEeCeEEc-----cchhhhhhccCCCCeEECcCCcC
Confidence 35778 6888775 4789999998 666667764 3332 24699998863
No 241
>1zbd_B Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: g.50.1.1
Probab=26.14 E-value=39 Score=32.60 Aligned_cols=37 Identities=22% Similarity=0.577 Sum_probs=30.2
Q ss_pred CCcccccCccccc-c--ccccccCcCCcccchhchHHhhc
Q 002330 328 DERVYCNHCATSI-I--DLHRSCPKCSYELCLTCCKEICE 364 (935)
Q Consensus 328 DERvyCDnCkTSI-~--D~HRSC~~CsyDLCL~CC~ELR~ 364 (935)
+..-.|.+|..+. | +--+-|..|.+.+|-.|+-....
T Consensus 53 ~~~~~C~~C~~~~g~l~~~g~~C~~C~~~VC~~C~~~~~~ 92 (134)
T 1zbd_B 53 DGVNRCILCGEQLGMLGSASVVCEDCKKNVCTKCGVETSN 92 (134)
T ss_dssp CSSSBCSSSCCBCSTTSCCEEECTTTCCEEETTSEEECCC
T ss_pred CCCccccccCCCcccccCCCCCCCCCCcccccccCCccCC
Confidence 4556899999887 3 56789999999999999887653
No 242
>3kv5_D JMJC domain-containing histone demethylation protein 1D; epigenetics, histone CODE, jumonji lysine demethylase, metal-binding, zinc, zinc-finger; HET: OGA; 2.39A {Homo sapiens} PDB: 3kv6_A*
Probab=24.99 E-value=20 Score=41.32 Aligned_cols=66 Identities=15% Similarity=0.208 Sum_probs=46.4
Q ss_pred HHHHHHHhhcCCCEEEEccccc---cCCCCCChhHHHHHHhhhccccccccCCceeEeecCCCceeecchhhhhccccC
Q 002330 505 LFRFQKHWIKGEPVIVRNVLDK---VTGLSWEPMVMWRALCENVDSEVSSKMSEVKAIDCLASCEVEISTRQFFKGYTQ 580 (935)
Q Consensus 505 l~hFQ~hW~kGePVIVr~Vl~~---~s~lsW~P~~mwra~~e~~~~~~~d~~~~vkaiDCld~~eVei~i~qFf~Gy~~ 580 (935)
...|++++ =..||||.+.-.. .....|+-..+-+.++. ...|.+|||.....+++++++|.+=|..
T Consensus 148 ~~~~~~~~-~~~Pvli~~~~~lg~~~P~~~~t~~~v~~~~G~---------d~~V~V~Dv~~Q~~~~m~l~~yi~y~~~ 216 (488)
T 3kv5_D 148 QRYLEKHG-FDVPIMVPKLDDLGLRLPSPTFSVMDVERYVGG---------DKVIDVIDVARQADSKMTLHNYVKYFMN 216 (488)
T ss_dssp HHHHHHHC-SCSCEEECSCTTTCCBCCCTTCCHHHHHHHHCT---------TCEEEEEETTTTEEEEEEHHHHHHHHHS
T ss_pred HHHHHhcC-CCCCEEEecCCCcCCcCCCCCCcHHHHHHHhCC---------CceeeeeecCccccccccHHHHHHHHhc
Confidence 35788876 4789999996421 12234776666544431 3468999999998889999999887765
No 243
>2yw8_A RUN and FYVE domain-containing protein 1; structure genomics, structural genomics, NPPSFA; 3.00A {Homo sapiens} PDB: 2yqm_A
Probab=24.98 E-value=40 Score=29.52 Aligned_cols=35 Identities=26% Similarity=0.761 Sum_probs=27.8
Q ss_pred CCCCcccccCccccccccc---cccCcCCcccchhchHH
Q 002330 326 GNDERVYCNHCATSIIDLH---RSCPKCSYELCLTCCKE 361 (935)
Q Consensus 326 ~~DERvyCDnCkTSI~D~H---RSC~~CsyDLCL~CC~E 361 (935)
+.++...|..|..+ |.+- -+|..|+.-+|-.|+..
T Consensus 15 ~d~~~~~C~~C~~~-Fs~~~RrHHCR~CG~v~C~~Cs~~ 52 (82)
T 2yw8_A 15 KDDEATHCRQCEKE-FSISRRKHHCRNCGHIFCNTCSSN 52 (82)
T ss_dssp CCCCCCBCTTTCCB-CBTTBCCEECTTTCCEECSGGGCE
T ss_pred cCccCCcccCcCCc-ccCccccccCCCCCCEEChHHhCC
Confidence 45667789999886 4444 58999999999999864
No 244
>3lqh_A Histone-lysine N-methyltransferase MLL; PHD finger, bromodomain, leukemia, apoptosis, chromati regulator, DNA-binding, isopeptide bond; 1.72A {Homo sapiens} PDB: 3lqi_A* 3lqj_A* 2kyu_A
Probab=24.58 E-value=48 Score=33.49 Aligned_cols=47 Identities=28% Similarity=0.550 Sum_probs=31.7
Q ss_pred CCcccccccCCC-----CceEecCcCCCCcccHhHHhhhCCCCChh----------hhhccCCCCCCc
Q 002330 201 RIKCHQCMKSER-----KYVVPCGKCRTKVYCIQCIKQWYPKMSEL----------DVAEICPFCRRN 253 (935)
Q Consensus 201 ~~~CHQCrqk~~-----~~~v~C~~C~r~~FC~~CL~~rY~e~~~e----------dv~w~CP~CRgi 253 (935)
|..|--|++.-. ...+.|-.|. .-|=+.|.. ++.+ +..|.||.|+..
T Consensus 2 G~~CpiC~k~Y~~~~~~~~MIqCd~C~-~W~H~~Cvg-----i~~~~~e~~~~~pe~~~y~Cp~C~~~ 63 (183)
T 3lqh_A 2 GNFCPLCDKCYDDDDYESKMMQCGKCD-RWVHSKCEN-----LSDEMYEILSNLPESVAYTCVNCTER 63 (183)
T ss_dssp CCBCTTTCCBCTTCCTTCCEEECTTTC-CEEEGGGSS-----CCHHHHHHHHHSHHHHCCCCTTTCCS
T ss_pred cCcCCCCcCccCCcccCCCeEECCCCC-cccchhccc-----cCHHHHHHhhcCCCCCeeECcCCCCC
Confidence 567888887642 2389999999 555555552 3332 247999999873
No 245
>2jmo_A Parkin; IBR, E3 ligase, zinc binding domain, RBR; NMR {Homo sapiens}
Probab=24.35 E-value=48 Score=28.92 Aligned_cols=34 Identities=21% Similarity=0.737 Sum_probs=27.5
Q ss_pred CCcccccC--cccccc----ccccccC-----cCCcccchhchHH
Q 002330 328 DERVYCNH--CATSII----DLHRSCP-----KCSYELCLTCCKE 361 (935)
Q Consensus 328 DERvyCDn--CkTSI~----D~HRSC~-----~CsyDLCL~CC~E 361 (935)
+..+||-. |.+.|. +....|+ +|+|.+|..|-.+
T Consensus 23 ~~~~~CP~p~C~~~v~~~~~~~~v~C~~~~~~~C~~~FC~~C~~~ 67 (80)
T 2jmo_A 23 MGGVLCPRPGCGAGLLPEPDQRKVTCEGGNGLGCGFAFCRECKEA 67 (80)
T ss_dssp CSSCCCCSSSCCCCCCCCSCTTSBCTTSSSTTCCSCCEETTTTEE
T ss_pred CCcEECCCCCCCcccEECCCCCcCCCCCCCCCCCCCeeccccCcc
Confidence 34999988 999885 3457898 9999999999643
No 246
>3kgl_A Cruciferin; 11S SEED globulin, rapeseed, SEED storage protein, storage protein, plant protein; 2.98A {Brassica napus}
Probab=23.99 E-value=29 Score=39.89 Aligned_cols=22 Identities=14% Similarity=0.178 Sum_probs=19.3
Q ss_pred ecCceeEecCCCcccccccccc
Q 002330 847 KLGEAVFIPAGCPHQVRNLKSC 868 (935)
Q Consensus 847 ~lGEAVFIPAGCPHQVRNLkSC 868 (935)
+.||+|.||||.||=.-|.-.-
T Consensus 150 ~~GDvi~iPaG~~~~~~N~g~e 171 (466)
T 3kgl_A 150 RTGDTIATHPGVAQWFYNDGNQ 171 (466)
T ss_dssp ETTEEEEECTTCEEEEECCSSS
T ss_pred cCCCEEEECCCCcEEEEeCCCC
Confidence 5699999999999999998644
No 247
>3avr_A Lysine-specific demethylase 6A; cupin superfamily, TRI/dimethyllysine demethylase, oxidoredu structural protein complex; HET: M3L OGA EDO; 1.80A {Homo sapiens} PDB: 3avs_A*
Probab=23.99 E-value=50 Score=38.61 Aligned_cols=37 Identities=19% Similarity=0.514 Sum_probs=29.6
Q ss_pred CCCcccccCccccccccccccC--cCC---cccchhchHHhh
Q 002330 327 NDERVYCNHCATSIIDLHRSCP--KCS---YELCLTCCKEIC 363 (935)
Q Consensus 327 ~DERvyCDnCkTSI~D~HRSC~--~Cs---yDLCL~CC~ELR 363 (935)
.+...+|..|++-+|++...|+ +|. .++|+.|...-+
T Consensus 455 ~~~~~~C~~C~~~lFn~~~v~~~~~~~~~~~v~C~~Ca~~~~ 496 (531)
T 3avr_A 455 EEPAHYCSICEVEVFDLLFVTNESNSRKTYIVHCQDCARKTS 496 (531)
T ss_dssp TCCCEECTTTCCEECSEEEEEECTTCSSEEEEECHHHHHHHC
T ss_pred CCCCeeccccchhheeeEEEEecCCCCCCCCcCChhhhhhcC
Confidence 4567899999999999998885 242 479999999743
No 248
>2ffw_A Midline-1; B-BOX, ring finger, zinc-finger, ligase; NMR {Homo sapiens}
Probab=23.94 E-value=1.2e+02 Score=26.21 Aligned_cols=37 Identities=27% Similarity=0.676 Sum_probs=29.2
Q ss_pred cCCCcccccccCC-CCceEecCcCCCCcccHhHHhh-hCC
Q 002330 199 LERIKCHQCMKSE-RKYVVPCGKCRTKVYCIQCIKQ-WYP 236 (935)
Q Consensus 199 ~~~~~CHQCrqk~-~~~~v~C~~C~r~~FC~~CL~~-rY~ 236 (935)
.....|.-|.... ...+..|..|. ..||..|+.. ++.
T Consensus 28 ~~~v~C~~C~~~~~~~A~ksCl~C~-~s~C~~hl~~~H~~ 66 (78)
T 2ffw_A 28 AEKVLCQFCDQDPAQDAVKTCVTCE-VSYCDECLKATHPN 66 (78)
T ss_dssp SCCCBCSSCCSSSCCBCCEEETTTT-EEECHHHHHHHSCC
T ss_pred CCCccCCcCCCCCCCCCeeEccCcc-chhhhhhhHhhcCC
Confidence 3457899998544 55688999999 9999999997 553
No 249
>2o35_A Hypothetical protein DUF1244; helix bundle, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.12A {Sinorhizobium meliloti} SCOP: a.293.1.1
Probab=23.78 E-value=23 Score=33.13 Aligned_cols=13 Identities=31% Similarity=1.255 Sum_probs=11.6
Q ss_pred cccHhHHhhhCCC
Q 002330 225 VYCIQCIKQWYPK 237 (935)
Q Consensus 225 ~FC~~CL~~rY~e 237 (935)
.||..||.+||.+
T Consensus 42 GFCRNCLskWy~~ 54 (105)
T 2o35_A 42 GFCRNCLSNWYRE 54 (105)
T ss_dssp SCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 6999999999964
No 250
>3fyb_A Protein of unknown function (DUF1244); hydrocar degrading, structural genomics, PSI-2; HET: PEG; 1.80A {Alcanivorax borkumensis SK2}
Probab=23.63 E-value=23 Score=33.05 Aligned_cols=13 Identities=23% Similarity=1.035 Sum_probs=11.6
Q ss_pred cccHhHHhhhCCC
Q 002330 225 VYCIQCIKQWYPK 237 (935)
Q Consensus 225 ~FC~~CL~~rY~e 237 (935)
.||..||.+||.+
T Consensus 41 GFCRNCLskWy~~ 53 (104)
T 3fyb_A 41 DFCRNCLAKWLME 53 (104)
T ss_dssp SCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 6999999999963
No 251
>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A*
Probab=23.02 E-value=17 Score=33.67 Aligned_cols=59 Identities=17% Similarity=0.450 Sum_probs=0.0
Q ss_pred CCcccccccCC--------CCceEecCcCCCCcccHhHHhhhCCCCChh-hhhccCCCCCCcccCccccccC
Q 002330 201 RIKCHQCMKSE--------RKYVVPCGKCRTKVYCIQCIKQWYPKMSEL-DVAEICPFCRRNCNCSVCLHTS 263 (935)
Q Consensus 201 ~~~CHQCrqk~--------~~~~v~C~~C~r~~FC~~CL~~rY~e~~~e-dv~w~CP~CRgiCNCs~Clr~~ 263 (935)
...|..|.... .+.++.|..|. ..|=..||.......... ...|.||.|. .|.+|.+..
T Consensus 1 ~~~C~~C~~~~~~n~k~g~~~~Li~C~~C~-~~~H~~Cl~~~~~~~~~~~~~~W~C~~C~---~C~~C~~~~ 68 (114)
T 2kwj_A 1 GSYCDFCLGGSNMNKKSGRPEELVSCADCG-RSGHPTCLQFTLNMTEAVKTYKWQCIECK---SCILCGTSE 68 (114)
T ss_dssp CCCCSSSCCBTTBCTTTCCCCCCEECSSSC-CEECTTTTTCCHHHHHHHHHTTCCCGGGC---CCTTTTCCT
T ss_pred CCcCccCCCCccccccCCCCCCCeEeCCCC-CccchhhCCChhhhhhccCCCccCccccC---ccCcccccC
No 252
>3qac_A 11S globulin SEED storage protein; 11S SEED storage protein (globulins) family, SEED storage PR plant protein; 2.27A {Amaranthus hypochondriacus}
Probab=22.88 E-value=36 Score=39.11 Aligned_cols=34 Identities=29% Similarity=0.374 Sum_probs=25.5
Q ss_pred ecCceeEecCCCccccccccccceecccccCccc
Q 002330 847 KLGEAVFIPAGCPHQVRNLKSCTKVAVDFVSPEN 880 (935)
Q Consensus 847 ~lGEAVFIPAGCPHQVRNLkSCIKVAlDFVSPEn 880 (935)
+.||+|+||||.+|=.-|--+-==|++-++.|-|
T Consensus 135 ~~GDvi~iPaG~~hw~~N~G~~~lv~v~~~d~~n 168 (465)
T 3qac_A 135 REGDIFAMPAGVSHWAYNNGDQPLVAVILIDTAN 168 (465)
T ss_dssp ETTEEEEECTTCEEEEECCSSSCEEEEEEECTTS
T ss_pred cCCCEEEECCCCeEEEEcCCCCCEEEEEEEcCCC
Confidence 6799999999999999998655445554544444
No 253
>2ku3_A Bromodomain-containing protein 1; PHD finger, chromatin regulator, metal-binding, finger, signaling protein; NMR {Homo sapiens}
Probab=22.80 E-value=30 Score=29.86 Aligned_cols=49 Identities=20% Similarity=0.432 Sum_probs=37.1
Q ss_pred ccCCCcccccccCC---CCceEecCcCCCCcccHhHHhhhCCCCChhhhhccCCCCC
Q 002330 198 ELERIKCHQCMKSE---RKYVVPCGKCRTKVYCIQCIKQWYPKMSELDVAEICPFCR 251 (935)
Q Consensus 198 k~~~~~CHQCrqk~---~~~~v~C~~C~r~~FC~~CL~~rY~e~~~edv~w~CP~CR 251 (935)
..+...|..|++.+ .+.++.|-.|. ..|=..|+.-. .++ +-.|.||.|+
T Consensus 13 ~~~~~~C~vC~~~~s~~~~~ll~CD~C~-~~~H~~Cl~~~--~vP--~g~W~C~~C~ 64 (71)
T 2ku3_A 13 IDEDAVCSICMDGESQNSNVILFCDMCN-LAVHQECYGVP--YIP--EGQWLCRHCL 64 (71)
T ss_dssp CCSSCSCSSSCCCCCCSSSCEEECSSSC-CEEEHHHHTCS--SCC--SSCCCCHHHH
T ss_pred CCCCCCCCCCCCCCCCCCCCEEECCCCC-CccccccCCCC--cCC--CCCcCCccCc
Confidence 45678899999874 46799999999 68888888743 222 2469999885
No 254
>3nw4_A Gentisate 1,2-dioxygenase; beta-barrel, oxidoreductase; HET: GTQ; 2.00A {Pseudaminobacter salicylatoxidans} PDB: 3nvc_A* 3nst_A* 3njz_A* 2phd_A* 3nkt_A* 3nl1_A* 4fag_A* 4fbf_A 4fah_A
Probab=22.63 E-value=42 Score=37.43 Aligned_cols=30 Identities=13% Similarity=0.194 Sum_probs=25.4
Q ss_pred cceEEEeecCceeEecCCCccccccccccc
Q 002330 840 EPWTFEQKLGEAVFIPAGCPHQVRNLKSCT 869 (935)
Q Consensus 840 epWtf~Q~lGEAVFIPAGCPHQVRNLkSCI 869 (935)
.+=+|.=..||++.||+|++||..|...|+
T Consensus 315 ~~~~~~w~~gD~fvvP~w~~h~~~n~~~a~ 344 (368)
T 3nw4_A 315 NGETTKLEKGDMFVVPSWVPWSLQAETQFD 344 (368)
T ss_dssp TTEEEEECTTCEEEECTTCCEEEEESSSEE
T ss_pred CCEEEEecCCCEEEECCCCcEEEEeCCCEE
Confidence 445688889999999999999999986654
No 255
>1wep_A PHF8; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Mus musculus} SCOP: g.50.1.2
Probab=22.31 E-value=1.7e+02 Score=25.17 Aligned_cols=47 Identities=23% Similarity=0.668 Sum_probs=33.4
Q ss_pred cCCCcccccccCC--CCceEecCcCCCCcccHhHHhhhCCCCChhh----hhccCCCCCC
Q 002330 199 LERIKCHQCMKSE--RKYVVPCGKCRTKVYCIQCIKQWYPKMSELD----VAEICPFCRR 252 (935)
Q Consensus 199 ~~~~~CHQCrqk~--~~~~v~C~~C~r~~FC~~CL~~rY~e~~~ed----v~w~CP~CRg 252 (935)
.....| .|++.. ...++.|-.|. .-|=..|+. ++.++ ..|.||.|+.
T Consensus 10 ~~~~~C-~C~~~~d~~~~MIqCd~C~-~WfH~~Cvg-----l~~~~~~~~~~~~C~~C~~ 62 (79)
T 1wep_A 10 LVPVYC-LCRQPYNVNHFMIECGLCQ-DWFHGSCVG-----IEEENAVDIDIYHCPDCEA 62 (79)
T ss_dssp CCCCCS-TTSCSCCSSSCEEEBTTTC-CEEEHHHHT-----CCHHHHTTCSBBCCTTTTT
T ss_pred CCccEE-EcCCccCCCCceEEcCCCC-CcEEeeecC-----cccccccCCCeEECCCccc
Confidence 446677 788865 56789999998 666667764 33332 4699999986
No 256
>1z2q_A LM5-1; membrane protein, FYVE domain, zinc-finger; NMR {Leishmania major}
Probab=22.18 E-value=63 Score=28.34 Aligned_cols=35 Identities=26% Similarity=0.775 Sum_probs=28.2
Q ss_pred CCCCcccccCccccccccc---cccCcCCcccchhchHH
Q 002330 326 GNDERVYCNHCATSIIDLH---RSCPKCSYELCLTCCKE 361 (935)
Q Consensus 326 ~~DERvyCDnCkTSI~D~H---RSC~~CsyDLCL~CC~E 361 (935)
..++...|..|.++ |.+- -+|..|+.-+|-.|+..
T Consensus 17 pd~~~~~C~~C~~~-Fs~~~RrHHCR~CG~v~C~~Cs~~ 54 (84)
T 1z2q_A 17 EDEDAPACNGCGCV-FTTTVRRHHCRNCGYVLCGDCSRH 54 (84)
T ss_dssp CTTTCCBCTTTCCB-CCTTSCCEECTTTCCEECTGGGCC
T ss_pred cCCCCCCCcCcCCc-cccchhcccccCCCcEEChHHhCC
Confidence 45567789999988 4444 58999999999999864
No 257
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C
Probab=21.88 E-value=33 Score=34.61 Aligned_cols=44 Identities=11% Similarity=0.129 Sum_probs=32.0
Q ss_pred CCcccccccCCCCceEecCcCCCCcccHhHHhhhCCCCChhhhhccCCCCCC
Q 002330 201 RIKCHQCMKSERKYVVPCGKCRTKVYCIQCIKQWYPKMSELDVAEICPFCRR 252 (935)
Q Consensus 201 ~~~CHQCrqk~~~~~v~C~~C~r~~FC~~CL~~rY~e~~~edv~w~CP~CRg 252 (935)
...|--|..--.+.++. .|+ ..||..||..|.... . ..||+|+.
T Consensus 106 ~f~CPI~~elm~DPV~~--~~G-htfer~~I~~~l~~~---~--~tcP~t~~ 149 (179)
T 2f42_A 106 YLCGKISFELMREPCIT--PSG-ITYDRKDIEEHLQRV---G--HFDPVTRS 149 (179)
T ss_dssp GGBCTTTCSBCSSEEEC--TTS-CEEEHHHHHHHHHHT---C--SBCTTTCC
T ss_pred hhcccCccccCCCCeEC--CCC-CEECHHHHHHHHHhC---C--CCCCCCcC
Confidence 46677777665555655 588 899999999998431 1 26999985
No 258
>2xb1_A Pygopus homolog 2, B-cell CLL/lymphoma 9-like Pro; fusion protein, signal transduction, transcription, metal BI WNT proteins; 1.90A {Homo sapiens}
Probab=21.62 E-value=23 Score=32.69 Aligned_cols=46 Identities=22% Similarity=0.607 Sum_probs=32.6
Q ss_pred CCcccccccC--CCCceEecC-cCCCCcccHhHHhhhCCCCChh---------hhhccCCCCCC
Q 002330 201 RIKCHQCMKS--ERKYVVPCG-KCRTKVYCIQCIKQWYPKMSEL---------DVAEICPFCRR 252 (935)
Q Consensus 201 ~~~CHQCrqk--~~~~~v~C~-~C~r~~FC~~CL~~rY~e~~~e---------dv~w~CP~CRg 252 (935)
...|..|++. +.+..+.|- .|. .-|=..|+. ++.+ +..|.||.|+.
T Consensus 3 ~~~C~iC~~p~~~~~~mi~Cdd~C~-~WfH~~CVg-----lt~~~~~~i~~~~~~~~~Cp~C~~ 60 (105)
T 2xb1_A 3 VYPCGACRSEVNDDQDAILCEASCQ-KWFHRECTG-----MTESAYGLLTTEASAVWACDLCLK 60 (105)
T ss_dssp CCBCTTTCSBCCTTSCEEECTTTTC-CEEEGGGTT-----CCHHHHHHHHHCTTEEECCHHHHH
T ss_pred cCCCCCCCCccCCCCCEEEecCCcc-cccccccCC-----cCHHHHHhhccCCCCCEECccccC
Confidence 4578999988 556789997 787 656666653 4442 24699999875
No 259
>1x4u_A Zinc finger, FYVE domain containing 27 isoform B; phosphoinositide binding, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=20.80 E-value=48 Score=29.05 Aligned_cols=35 Identities=26% Similarity=0.776 Sum_probs=27.3
Q ss_pred CCCCcccccCccccccccc---cccCcCCcccchhchHH
Q 002330 326 GNDERVYCNHCATSIIDLH---RSCPKCSYELCLTCCKE 361 (935)
Q Consensus 326 ~~DERvyCDnCkTSI~D~H---RSC~~CsyDLCL~CC~E 361 (935)
+.++...|..|..+ |.+. -+|..|+.-+|-.|+..
T Consensus 10 pd~~~~~C~~C~~~-F~~~~RrHHCR~CG~vfC~~Cs~~ 47 (84)
T 1x4u_A 10 PTNNFGNCTGCSAT-FSVLKKRRSCSNCGNSFCSRCCSF 47 (84)
T ss_dssp SCCCCSSCSSSCCC-CCSSSCCEECSSSCCEECTTTSCE
T ss_pred cCCCCCcCcCcCCc-cccchhhhhhcCCCcEEChhhcCC
Confidence 45566789999987 3443 58999999999999753
No 260
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=20.54 E-value=29 Score=30.69 Aligned_cols=50 Identities=18% Similarity=0.308 Sum_probs=32.5
Q ss_pred CCcccccccCCCCceEecCcCCCCcccHhHHhhhCCCCChhhhhccCCC--CCC
Q 002330 201 RIKCHQCMKSERKYVVPCGKCRTKVYCIQCIKQWYPKMSELDVAEICPF--CRR 252 (935)
Q Consensus 201 ~~~CHQCrqk~~~~~v~C~~C~r~~FC~~CL~~rY~e~~~edv~w~CP~--CRg 252 (935)
...|--|..--.+.++ -..|+ ..||..||..|+.......-...||+ |+.
T Consensus 7 ~~~CPI~~~~~~dPV~-~~~cG-h~f~r~cI~~~l~~~~~~~~~~~CP~tgc~~ 58 (94)
T 2yu4_A 7 GFTCPITKEEMKKPVK-NKVCG-HTYEEDAIVRMIESRQKRKKKAYCPQIGCSH 58 (94)
T ss_dssp CCBCTTTCSBCSSEEE-ESSSC-CEEEHHHHHHHHHHHHTTTCCBCCCSTTCCC
T ss_pred EeECcCcCchhcCCEE-cCCCC-CeecHHHHHHHHHHccCcCCCCCCCcCcCcc
Confidence 4678888766554443 23588 99999999999852100012468998 764
No 261
>2l43_A N-teminal domain from histone H3.3, linker, PHD1 from bromodomain-containing protein...; PHD finger, histone CODE, transcription; NMR {Homo sapiens}
Probab=20.33 E-value=36 Score=30.43 Aligned_cols=48 Identities=21% Similarity=0.497 Sum_probs=35.4
Q ss_pred CCCcccccccCC---CCceEecCcCCCCcccHhHHhhhCCCCChhhhhccCCCCCC
Q 002330 200 ERIKCHQCMKSE---RKYVVPCGKCRTKVYCIQCIKQWYPKMSELDVAEICPFCRR 252 (935)
Q Consensus 200 ~~~~CHQCrqk~---~~~~v~C~~C~r~~FC~~CL~~rY~e~~~edv~w~CP~CRg 252 (935)
+...|-.|++.+ .+.++.|-.|. ..|=..|+.-. .++ +-.|.||.|..
T Consensus 24 ~~~~C~vC~~~~s~~~~~ll~CD~C~-~~fH~~Cl~p~--~vP--~g~W~C~~C~~ 74 (88)
T 2l43_A 24 EDAVCSICMDGESQNSNVILFCDMCN-LAVHQECYGVP--YIP--EGQWLCRHCLQ 74 (88)
T ss_dssp CCCCCSSCCSSSSCSEEEEEECSSSC-CCCCHHHHTCS--SCC--SSCCCCHHHHH
T ss_pred CCCcCCcCCCCCCCCCCCEEECCCCC-chhhcccCCCC--ccC--CCceECccccC
Confidence 456899999874 35799999999 67888898743 222 24799998853
No 262
>3o70_A PHD finger protein 13; PHF13, structural genomics consortium, SGC, structural genom type zinc finger, protein binding, zinc ION binding; 1.85A {Homo sapiens}
Probab=20.03 E-value=22 Score=30.35 Aligned_cols=50 Identities=22% Similarity=0.493 Sum_probs=32.4
Q ss_pred ccCCCcccccccCCCC-ceEecCcCCCCcccHhHHhhhCCCCChhhhhccCCCCCC
Q 002330 198 ELERIKCHQCMKSERK-YVVPCGKCRTKVYCIQCIKQWYPKMSELDVAEICPFCRR 252 (935)
Q Consensus 198 k~~~~~CHQCrqk~~~-~~v~C~~C~r~~FC~~CL~~rY~e~~~edv~w~CP~CRg 252 (935)
......| -|++...+ .++.|-.|. .-|=..|+.-.-... .-.|.||.|+.
T Consensus 16 ~~~~~~C-iC~~~~~~~~MIqCd~C~-~WfH~~Cvgi~~~~~---~~~~~C~~C~~ 66 (68)
T 3o70_A 16 FQGLVTC-FCMKPFAGRPMIECNECH-TWIHLSCAKIRKSNV---PEVFVCQKCRD 66 (68)
T ss_dssp TTTCCCS-TTCCCCTTCCEEECTTTC-CEEETTTTTCCTTSC---CSSCCCHHHHT
T ss_pred CCCceEe-ECCCcCCCCCEEECCCCC-ccccccccCcCcccC---CCcEECCCCCC
Confidence 3567888 89988654 589999997 545455554222111 13699999864
Done!