Query 002333
Match_columns 935
No_of_seqs 214 out of 298
Neff 4.2
Searched_HMMs 29240
Date Mon Mar 25 22:02:56 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002333.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/002333hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ypd_A Probable JMJC domain-co 100.0 4E-129 1E-133 1060.9 15.8 352 497-920 16-370 (392)
2 4gjz_A Lysine-specific demethy 99.2 1.3E-11 4.4E-16 123.7 6.1 35 839-873 198-232 (235)
3 3k2o_A Bifunctional arginine d 99.1 3.8E-10 1.3E-14 123.4 12.7 53 838-890 252-304 (336)
4 3al5_A HTYW5, JMJC domain-cont 98.9 1.9E-09 6.3E-14 117.4 6.5 42 839-880 237-278 (338)
5 3k3o_A PHF8, PHD finger protei 98.8 2.7E-08 9.1E-13 110.3 14.8 79 838-922 213-295 (371)
6 2yu1_A JMJC domain-containing 98.8 2.3E-08 7.7E-13 113.4 14.5 53 837-889 261-313 (451)
7 3kv4_A PHD finger protein 8; e 98.8 1.3E-08 4.6E-13 115.1 10.6 79 839-923 298-380 (447)
8 3kv5_D JMJC domain-containing 98.7 2E-08 6.9E-13 114.8 10.8 51 839-889 333-383 (488)
9 3kv9_A JMJC domain-containing 98.7 6.2E-08 2.1E-12 108.2 13.6 52 838-889 241-292 (397)
10 3d8c_A Hypoxia-inducible facto 98.7 4.5E-09 1.6E-13 115.0 3.6 40 838-877 257-297 (349)
11 3pua_A GRC5, PHD finger protei 98.6 1.7E-07 5.7E-12 104.6 12.7 79 838-922 240-322 (392)
12 3pur_A Lysine-specific demethy 97.4 0.0001 3.6E-09 84.8 4.9 51 839-889 363-413 (528)
13 2xxz_A Lysine-specific demethy 97.3 0.00029 9.9E-09 77.3 7.1 86 777-881 233-318 (332)
14 3avr_A Lysine-specific demethy 97.0 0.00058 2E-08 78.9 6.5 89 776-883 291-379 (531)
15 4ask_A Lysine-specific demethy 96.4 0.0025 8.7E-08 73.1 5.8 88 776-882 266-353 (510)
16 3dxt_A JMJC domain-containing 95.9 0.0082 2.8E-07 66.4 6.5 94 779-883 210-303 (354)
17 3opt_A DNA damage-responsive t 95.0 0.03 1E-06 62.3 6.8 93 779-882 253-345 (373)
18 2ox0_A JMJC domain-containing 94.7 0.047 1.6E-06 61.0 7.3 95 778-883 227-321 (381)
19 2ecw_A Tripartite motif-contai 92.7 0.082 2.8E-06 44.9 3.7 52 200-254 18-69 (85)
20 2ysl_A Tripartite motif-contai 90.9 0.23 7.8E-06 41.4 4.5 48 200-253 19-66 (73)
21 2opk_A Hypothetical protein; p 90.9 0.069 2.4E-06 48.8 1.3 24 844-867 75-98 (112)
22 1yhf_A Hypothetical protein SP 90.6 0.11 3.9E-06 46.1 2.5 58 815-879 57-114 (115)
23 2pfw_A Cupin 2, conserved barr 90.4 0.092 3.1E-06 46.8 1.6 58 814-879 50-107 (116)
24 4ayc_A E3 ubiquitin-protein li 90.2 0.33 1.1E-05 46.0 5.5 43 202-253 54-96 (138)
25 3ht1_A REMF protein; cupin fol 90.2 0.15 5.2E-06 46.9 3.0 41 839-879 76-116 (145)
26 3fjs_A Uncharacterized protein 90.1 0.12 4.1E-06 47.2 2.2 42 837-879 69-110 (114)
27 2csy_A Zinc finger protein 183 89.9 0.2 6.9E-06 42.9 3.3 47 200-255 14-60 (81)
28 3lag_A Uncharacterized protein 89.9 0.11 3.6E-06 46.9 1.6 24 844-867 61-84 (98)
29 2d8t_A Dactylidin, ring finger 89.8 0.36 1.2E-05 40.4 4.8 45 200-253 14-58 (71)
30 2ecv_A Tripartite motif-contai 89.8 0.11 3.8E-06 44.0 1.7 52 201-255 19-70 (85)
31 2q30_A Uncharacterized protein 89.6 0.1 3.5E-06 45.8 1.3 36 841-878 73-108 (110)
32 1vrb_A Putative asparaginyl hy 89.5 0.17 5.7E-06 55.4 3.1 36 839-874 215-252 (342)
33 3h8u_A Uncharacterized conserv 89.4 0.16 5.6E-06 46.0 2.5 38 842-879 79-116 (125)
34 1iym_A EL5; ring-H2 finger, ub 89.4 0.34 1.2E-05 38.2 4.1 45 201-252 5-51 (55)
35 2fc7_A ZZZ3 protein; structure 89.3 0.2 6.7E-06 44.8 2.8 37 328-364 19-60 (82)
36 3lrq_A E3 ubiquitin-protein li 89.2 0.16 5.4E-06 45.7 2.3 48 200-254 21-68 (100)
37 1x4j_A Ring finger protein 38; 89.2 0.32 1.1E-05 41.0 4.0 46 200-252 22-68 (75)
38 1v70_A Probable antibiotics sy 89.2 0.16 5.5E-06 43.5 2.2 37 842-878 67-103 (105)
39 4e2g_A Cupin 2 conserved barre 88.8 0.32 1.1E-05 44.0 4.0 59 814-879 57-115 (126)
40 2ecm_A Ring finger and CHY zin 88.5 0.21 7.1E-06 39.4 2.3 45 201-252 5-51 (55)
41 2b8m_A Hypothetical protein MJ 88.3 0.17 6E-06 45.4 1.9 36 845-880 69-106 (117)
42 2ozj_A Cupin 2, conserved barr 88.1 0.18 6E-06 45.2 1.7 36 837-872 71-106 (114)
43 1juh_A Quercetin 2,3-dioxygena 88.1 0.19 6.5E-06 54.8 2.4 40 843-883 292-332 (350)
44 1tot_A CREB-binding protein; z 87.9 0.15 5.2E-06 41.9 1.1 33 330-363 6-39 (52)
45 2fqp_A Hypothetical protein BP 87.9 0.24 8.1E-06 43.6 2.4 25 843-867 60-84 (97)
46 2ecy_A TNF receptor-associated 87.6 0.23 7.8E-06 41.0 2.0 45 201-253 15-59 (66)
47 2xlg_A SLL1785 protein, CUCA; 87.6 0.33 1.1E-05 50.8 3.7 76 814-892 59-163 (239)
48 3d82_A Cupin 2, conserved barr 87.6 0.26 9E-06 42.5 2.5 28 843-870 69-96 (102)
49 2dip_A Zinc finger SWIM domain 87.4 0.2 6.7E-06 46.3 1.6 37 327-363 28-66 (98)
50 2e5r_A Dystrobrevin alpha; ZZ 87.2 0.23 7.9E-06 42.3 1.9 34 331-364 12-47 (63)
51 3ibm_A Cupin 2, conserved barr 87.0 0.21 7.3E-06 48.9 1.8 60 814-879 72-132 (167)
52 2gu9_A Tetracenomycin polyketi 87.0 0.32 1.1E-05 42.5 2.8 40 840-879 60-99 (113)
53 2y43_A E3 ubiquitin-protein li 87.0 0.72 2.5E-05 40.9 5.1 45 201-253 22-66 (99)
54 1o5u_A Novel thermotoga mariti 86.9 0.21 7.1E-06 45.4 1.5 31 841-871 67-97 (101)
55 2ecj_A Tripartite motif-contai 86.8 0.53 1.8E-05 37.3 3.7 44 201-250 15-58 (58)
56 3kgz_A Cupin 2 conserved barre 86.7 0.36 1.2E-05 47.0 3.2 41 839-879 79-119 (156)
57 2kiz_A E3 ubiquitin-protein li 86.2 0.35 1.2E-05 40.0 2.4 46 200-252 13-59 (69)
58 2egp_A Tripartite motif-contai 85.9 0.33 1.1E-05 40.9 2.1 52 200-254 11-63 (79)
59 3h7j_A Bacilysin biosynthesis 85.5 0.28 9.6E-06 50.4 1.8 60 814-879 162-221 (243)
60 2l0b_A E3 ubiquitin-protein li 85.3 0.48 1.6E-05 41.8 3.0 48 199-253 38-86 (91)
61 2djb_A Polycomb group ring fin 85.0 0.38 1.3E-05 40.3 2.1 45 201-253 15-59 (72)
62 2ect_A Ring finger protein 126 84.8 0.75 2.6E-05 38.9 3.9 47 200-253 14-61 (78)
63 2ozi_A Hypothetical protein RP 84.7 0.28 9.7E-06 44.3 1.2 23 845-867 62-84 (98)
64 2ckl_A Polycomb group ring fin 84.6 1.3 4.6E-05 39.9 5.6 46 200-253 14-59 (108)
65 2i45_A Hypothetical protein; n 84.0 0.49 1.7E-05 41.9 2.5 38 842-882 67-104 (107)
66 1weu_A Inhibitor of growth fam 84.0 1.8 6E-05 39.5 6.1 48 199-252 34-84 (91)
67 3ql9_A Transcriptional regulat 83.9 0.53 1.8E-05 45.5 2.8 55 195-252 51-110 (129)
68 1y9q_A Transcriptional regulat 83.9 0.34 1.2E-05 47.4 1.6 43 837-880 139-181 (192)
69 1chc_A Equine herpes virus-1 r 83.9 0.78 2.7E-05 37.7 3.5 47 200-254 4-50 (68)
70 2yur_A Retinoblastoma-binding 83.5 0.49 1.7E-05 40.1 2.1 46 201-252 15-60 (74)
71 1lr5_A Auxin binding protein 1 83.5 0.41 1.4E-05 45.8 1.9 25 842-866 88-112 (163)
72 2lv9_A Histone-lysine N-methyl 83.2 0.76 2.6E-05 42.0 3.4 48 199-251 26-74 (98)
73 3knv_A TNF receptor-associated 83.2 0.28 9.5E-06 47.3 0.5 47 199-253 29-75 (141)
74 2oa2_A BH2720 protein; 1017534 82.6 0.64 2.2E-05 43.9 2.8 25 843-867 89-113 (148)
75 2xeu_A Ring finger protein 4; 82.6 0.27 9.1E-06 39.6 0.2 46 201-253 3-53 (64)
76 1t1h_A Gspef-atpub14, armadill 82.6 0.99 3.4E-05 38.1 3.7 46 200-253 7-52 (78)
77 3l11_A E3 ubiquitin-protein li 82.5 0.79 2.7E-05 41.7 3.3 44 202-253 16-59 (115)
78 3cew_A Uncharacterized cupin p 82.4 0.52 1.8E-05 42.9 2.0 30 838-867 62-91 (125)
79 3l2h_A Putative sugar phosphat 82.4 0.67 2.3E-05 44.2 2.9 41 839-879 83-124 (162)
80 2ysj_A Tripartite motif-contai 82.3 0.77 2.6E-05 37.3 2.8 45 200-250 19-63 (63)
81 3jzv_A Uncharacterized protein 82.0 0.54 1.9E-05 46.3 2.1 30 838-867 87-116 (166)
82 3fl2_A E3 ubiquitin-protein li 81.9 0.6 2.1E-05 43.2 2.3 46 201-254 52-97 (124)
83 1vj2_A Novel manganese-contain 81.4 0.6 2E-05 42.9 2.1 29 839-867 83-111 (126)
84 1jm7_A BRCA1, breast cancer ty 81.4 0.65 2.2E-05 41.7 2.2 47 201-253 21-67 (112)
85 4ic3_A E3 ubiquitin-protein li 81.3 1.1 3.7E-05 38.2 3.5 40 201-253 24-64 (74)
86 4axo_A EUTQ, ethanolamine util 80.9 0.71 2.4E-05 45.4 2.5 61 815-882 80-140 (151)
87 2ckl_B Ubiquitin ligase protei 80.9 0.79 2.7E-05 44.4 2.8 46 202-254 55-100 (165)
88 1x82_A Glucose-6-phosphate iso 79.9 0.87 3E-05 45.4 2.8 40 840-879 117-156 (190)
89 3ztg_A E3 ubiquitin-protein li 79.9 1 3.4E-05 39.3 2.9 48 200-253 12-59 (92)
90 1jm7_B BARD1, BRCA1-associated 79.8 2.2 7.4E-05 39.2 5.2 44 200-253 21-64 (117)
91 2ea6_A Ring finger protein 4; 79.8 0.52 1.8E-05 38.5 1.0 45 202-253 16-65 (69)
92 1z6u_A NP95-like ring finger p 79.8 0.8 2.7E-05 44.4 2.4 46 202-255 79-124 (150)
93 2lri_C Autoimmune regulator; Z 79.6 1.6 5.5E-05 37.3 4.0 48 200-252 11-58 (66)
94 3a1b_A DNA (cytosine-5)-methyl 79.5 1.4 4.6E-05 44.1 4.0 55 195-252 73-133 (159)
95 2lbm_A Transcriptional regulat 79.5 0.86 2.9E-05 44.7 2.5 53 196-251 58-115 (142)
96 2o8q_A Hypothetical protein; c 79.4 0.99 3.4E-05 41.4 2.8 60 815-880 60-120 (134)
97 2ep4_A Ring finger protein 24; 79.3 1.3 4.3E-05 37.1 3.2 45 201-252 15-60 (74)
98 3lwc_A Uncharacterized protein 79.2 0.87 3E-05 42.3 2.4 37 841-879 76-113 (119)
99 2ct2_A Tripartite motif protei 78.8 0.85 2.9E-05 39.0 2.0 50 201-254 15-66 (88)
100 1g25_A CDK-activating kinase a 78.8 1.2 4E-05 36.5 2.8 46 202-253 4-52 (65)
101 4i4a_A Similar to unknown prot 78.3 1.8 6.2E-05 39.1 4.2 56 837-896 67-124 (128)
102 3ng2_A RNF4, snurf, ring finge 77.8 1.1 3.8E-05 36.9 2.4 48 200-254 9-61 (71)
103 2bnm_A Epoxidase; oxidoreducta 77.8 0.95 3.3E-05 44.3 2.3 45 815-865 137-185 (198)
104 3rns_A Cupin 2 conserved barre 77.7 0.84 2.9E-05 46.5 2.0 48 815-868 170-218 (227)
105 3bcw_A Uncharacterized protein 77.7 0.82 2.8E-05 43.0 1.7 30 844-873 89-118 (123)
106 2ecn_A Ring finger protein 141 77.2 0.54 1.8E-05 39.0 0.3 43 200-252 14-56 (70)
107 1y3t_A Hypothetical protein YX 76.5 1.1 3.7E-05 47.3 2.4 51 837-888 252-302 (337)
108 3i7d_A Sugar phosphate isomera 76.0 1.5 5.1E-05 42.5 3.1 42 838-879 79-122 (163)
109 1qwr_A Mannose-6-phosphate iso 75.9 0.91 3.1E-05 49.3 1.7 17 846-862 162-178 (319)
110 2ecl_A Ring-box protein 2; RNF 75.8 2.6 8.7E-05 36.5 4.2 30 217-253 44-73 (81)
111 1fi2_A Oxalate oxidase, germin 75.8 1.7 5.8E-05 43.5 3.5 39 842-880 119-157 (201)
112 4h7l_A Uncharacterized protein 75.8 0.43 1.5E-05 47.4 -0.8 47 813-864 60-108 (157)
113 2pv0_B DNA (cytosine-5)-methyl 75.7 2 6.7E-05 48.3 4.3 55 195-252 87-147 (386)
114 3o36_A Transcription intermedi 75.1 4.1 0.00014 40.5 6.1 49 200-253 3-51 (184)
115 1zx5_A Mannosephosphate isomer 75.1 1 3.4E-05 48.6 1.7 18 845-862 161-178 (300)
116 2f4p_A Hypothetical protein TM 74.6 1.6 5.6E-05 41.4 2.9 35 844-878 89-123 (147)
117 1wil_A KIAA1045 protein; ring 73.9 2 7E-05 39.0 3.1 52 200-252 14-75 (89)
118 2y1n_A E3 ubiquitin-protein li 72.8 2.1 7E-05 48.2 3.6 47 200-254 331-377 (389)
119 3u5n_A E3 ubiquitin-protein li 72.7 3.5 0.00012 41.9 4.9 50 199-253 5-54 (207)
120 1o4t_A Putative oxalate decarb 72.4 1.3 4.4E-05 41.1 1.6 31 837-867 91-121 (133)
121 1v87_A Deltex protein 2; ring- 72.3 1.4 4.7E-05 39.9 1.7 38 215-254 55-92 (114)
122 1rmd_A RAG1; V(D)J recombinati 71.7 1.5 5.3E-05 39.8 1.9 45 201-253 23-67 (116)
123 2ecg_A Baculoviral IAP repeat- 71.5 2.1 7.1E-05 36.4 2.6 40 201-253 25-65 (75)
124 2vqa_A SLL1358 protein, MNCA; 71.2 1.4 4.7E-05 47.3 1.7 55 843-898 279-333 (361)
125 4ap4_A E3 ubiquitin ligase RNF 71.1 2.5 8.7E-05 38.4 3.2 48 199-253 70-122 (133)
126 3rns_A Cupin 2 conserved barre 70.7 1.4 5E-05 44.7 1.6 56 812-873 51-106 (227)
127 1rc6_A Hypothetical protein YL 70.5 1.3 4.5E-05 45.9 1.3 47 816-867 197-243 (261)
128 2wfp_A Mannose-6-phosphate iso 69.7 1.5 5.3E-05 49.0 1.7 15 847-861 245-259 (394)
129 1e4u_A Transcriptional repress 69.7 2.5 8.5E-05 36.9 2.7 49 200-255 10-61 (78)
130 3hct_A TNF receptor-associated 69.1 1.5 5.2E-05 40.2 1.3 44 201-252 18-61 (118)
131 1wfl_A Zinc finger protein 216 69.0 4 0.00014 36.2 3.8 33 201-238 25-57 (74)
132 2pyt_A Ethanolamine utilizatio 69.0 2.3 7.8E-05 40.3 2.5 35 839-873 90-124 (133)
133 1wfp_A Zinc finger (AN1-like) 68.8 5.1 0.00017 35.5 4.4 34 200-238 24-57 (74)
134 1y3t_A Hypothetical protein YX 68.8 2 6.8E-05 45.2 2.3 48 837-885 80-127 (337)
135 2l5u_A Chromodomain-helicase-D 68.4 3.1 0.00011 34.7 2.9 48 200-252 10-57 (61)
136 3h7j_A Bacilysin biosynthesis 68.3 2 6.8E-05 44.1 2.1 48 814-867 50-98 (243)
137 2ea5_A Cell growth regulator w 67.9 5.2 0.00018 33.8 4.2 41 200-253 14-55 (68)
138 1pmi_A PMI, phosphomannose iso 67.5 1.8 6.2E-05 49.1 1.7 16 846-861 270-285 (440)
139 1sef_A Conserved hypothetical 67.3 1.9 6.6E-05 45.1 1.7 31 837-867 216-246 (274)
140 1bor_A Transcription factor PM 67.1 2.4 8E-05 34.2 1.9 42 200-253 5-46 (56)
141 1juh_A Quercetin 2,3-dioxygena 66.8 1.9 6.5E-05 47.0 1.7 70 814-889 66-140 (350)
142 1wgm_A Ubiquitin conjugation f 66.6 10 0.00035 34.3 6.2 45 201-253 22-66 (98)
143 1f62_A Transcription factor WS 66.2 4.9 0.00017 32.0 3.5 47 203-252 2-49 (51)
144 4e2q_A Ureidoglycine aminohydr 65.9 2 6.8E-05 45.8 1.6 29 837-865 220-248 (266)
145 1j58_A YVRK protein; cupin, de 65.8 2.1 7.2E-05 46.5 1.8 27 841-867 300-326 (385)
146 2ysm_A Myeloid/lymphoid or mix 65.4 4.8 0.00016 36.9 3.8 59 198-262 4-63 (111)
147 2yho_A E3 ubiquitin-protein li 65.2 4.7 0.00016 35.0 3.5 39 202-253 19-58 (79)
148 4diq_A Lysine-specific demethy 65.0 3.7 0.00013 47.4 3.6 42 837-878 223-266 (489)
149 2vpv_A Protein MIF2, MIF2P; nu 64.7 3.2 0.00011 41.4 2.7 29 839-867 125-153 (166)
150 1mm2_A MI2-beta; PHD, zinc fin 64.6 2.8 9.5E-05 35.1 1.9 49 199-252 7-55 (61)
151 2d40_A Z3393, putative gentisa 64.5 3.2 0.00011 45.5 2.8 40 839-878 136-175 (354)
152 1fp0_A KAP-1 corepressor; PHD 64.4 3.7 0.00013 37.3 2.8 51 197-252 21-71 (88)
153 4ap4_A E3 ubiquitin ligase RNF 64.3 3.3 0.00011 37.6 2.5 47 200-253 6-57 (133)
154 2xdv_A MYC-induced nuclear ant 63.9 3.8 0.00013 46.5 3.4 30 837-866 194-223 (442)
155 2vje_A E3 ubiquitin-protein li 63.2 3.1 0.00011 34.6 1.9 46 201-253 8-54 (64)
156 3v43_A Histone acetyltransfera 61.1 4 0.00014 37.8 2.5 50 200-252 60-111 (112)
157 1sq4_A GLXB, glyoxylate-induce 61.0 2.8 9.6E-05 44.3 1.6 31 837-867 103-133 (278)
158 3t6p_A Baculoviral IAP repeat- 59.7 4.4 0.00015 44.6 2.8 41 200-253 294-335 (345)
159 3nw4_A Gentisate 1,2-dioxygena 59.4 4.2 0.00014 45.3 2.7 29 839-867 139-167 (368)
160 3bu7_A Gentisate 1,2-dioxygena 59.1 4.2 0.00014 45.7 2.6 29 838-866 328-356 (394)
161 1sfn_A Conserved hypothetical 58.9 3.3 0.00011 42.7 1.7 32 836-867 198-229 (246)
162 1joc_A EEA1, early endosomal a 58.8 1.8 6.2E-05 41.2 -0.3 36 200-236 68-105 (125)
163 2e6r_A Jumonji/ARID domain-con 58.5 2.1 7.1E-05 38.8 0.0 53 197-252 12-65 (92)
164 1dgw_A Canavalin; duplicated s 58.4 4.5 0.00015 39.8 2.4 27 841-867 82-108 (178)
165 2yql_A PHD finger protein 21A; 57.9 1.7 5.9E-05 35.6 -0.6 49 199-252 7-55 (56)
166 2yw8_A RUN and FYVE domain-con 57.7 2.1 7.2E-05 37.7 -0.1 37 199-236 17-55 (82)
167 2vqa_A SLL1358 protein, MNCA; 56.5 3.2 0.00011 44.6 1.1 25 842-866 96-120 (361)
168 1zrr_A E-2/E-2' protein; nicke 56.5 7.3 0.00025 39.1 3.6 37 843-879 123-159 (179)
169 2k16_A Transcription initiatio 56.2 5.2 0.00018 34.3 2.2 50 200-252 17-67 (75)
170 1wev_A Riken cDNA 1110020M19; 55.6 1 3.5E-05 40.4 -2.4 52 200-252 15-71 (88)
171 2ro1_A Transcription intermedi 55.2 4.6 0.00016 40.7 1.9 47 202-253 3-49 (189)
172 2vje_B MDM4 protein; proto-onc 54.6 5 0.00017 33.2 1.7 46 201-253 7-53 (63)
173 2ct7_A Ring finger protein 31; 54.5 6.9 0.00024 34.6 2.8 37 324-360 18-59 (86)
174 1wfk_A Zinc finger, FYVE domai 54.5 5.1 0.00017 35.9 1.9 35 200-235 8-44 (88)
175 1sfn_A Conserved hypothetical 54.2 4.2 0.00014 41.9 1.5 31 838-868 82-112 (246)
176 2d5f_A Glycinin A3B4 subunit; 53.6 5.3 0.00018 46.0 2.3 32 846-877 117-148 (493)
177 2c2l_A CHIP, carboxy terminus 53.2 5.3 0.00018 40.8 2.0 46 201-254 208-253 (281)
178 3es1_A Cupin 2, conserved barr 52.8 6 0.0002 39.6 2.3 35 843-878 119-153 (172)
179 3asl_A E3 ubiquitin-protein li 52.0 6.5 0.00022 33.8 2.1 48 203-252 20-68 (70)
180 4b29_A Dimethylsulfoniopropion 51.6 4.9 0.00017 41.9 1.5 44 815-866 149-195 (217)
181 1z2q_A LM5-1; membrane protein 51.4 6.1 0.00021 34.9 1.9 35 200-235 20-56 (84)
182 2e9q_A 11S globulin subunit be 50.6 5.5 0.00019 45.5 1.8 35 846-880 131-165 (459)
183 3t7l_A Zinc finger FYVE domain 50.3 5.3 0.00018 35.9 1.3 35 200-235 19-55 (90)
184 1x4u_A Zinc finger, FYVE domai 50.0 5.5 0.00019 35.1 1.3 37 199-236 12-50 (84)
185 2kre_A Ubiquitin conjugation f 49.9 12 0.00041 33.9 3.6 45 200-253 28-72 (100)
186 1wff_A Riken cDNA 2810002D23 p 49.9 15 0.00052 33.3 4.2 34 200-238 24-58 (85)
187 2ct0_A Non-SMC element 1 homol 49.7 19 0.00066 31.4 4.7 48 200-253 14-61 (74)
188 3shb_A E3 ubiquitin-protein li 49.7 6.2 0.00021 34.8 1.6 48 203-252 28-76 (77)
189 3hcs_A TNF receptor-associated 49.7 5.2 0.00018 38.7 1.3 45 200-252 17-61 (170)
190 1vr3_A Acireductone dioxygenas 49.0 10 0.00035 38.7 3.3 37 843-879 128-164 (191)
191 1sq4_A GLXB, glyoxylate-induce 48.7 5.4 0.00018 42.1 1.3 32 836-867 224-255 (278)
192 1rc6_A Hypothetical protein YL 48.7 7.8 0.00027 40.0 2.5 30 838-867 95-124 (261)
193 1sef_A Conserved hypothetical 48.6 6.2 0.00021 41.2 1.7 31 837-867 97-127 (274)
194 4e2q_A Ureidoglycine aminohydr 48.5 5.6 0.00019 42.4 1.4 24 843-866 110-133 (266)
195 2puy_A PHD finger protein 21A; 48.5 4.6 0.00016 33.4 0.6 47 200-251 4-50 (60)
196 3htk_C E3 SUMO-protein ligase 48.4 10 0.00035 40.7 3.3 49 200-254 180-230 (267)
197 3dpl_R Ring-box protein 1; ubi 47.8 12 0.00043 34.3 3.4 28 219-253 71-98 (106)
198 3c3v_A Arachin ARAH3 isoform; 46.3 7.5 0.00026 45.0 2.1 34 847-880 131-164 (510)
199 2d40_A Z3393, putative gentisa 45.9 9.5 0.00032 41.7 2.7 27 839-865 303-329 (354)
200 2a20_A Regulating synaptic mem 45.7 2 6.7E-05 36.7 -2.1 52 197-251 5-58 (62)
201 1y02_A CARP2, FYVE-ring finger 45.7 6.2 0.00021 37.6 1.0 36 200-236 18-55 (120)
202 3ask_A E3 ubiquitin-protein li 44.6 6.2 0.00021 41.4 0.9 49 202-252 175-224 (226)
203 2e6s_A E3 ubiquitin-protein li 44.3 9.6 0.00033 33.5 1.9 48 203-252 28-76 (77)
204 1wg2_A Zinc finger (AN1-like) 44.3 14 0.00049 31.8 3.0 33 201-238 15-47 (64)
205 1fxz_A Glycinin G1; proglycini 43.8 8.7 0.0003 44.0 2.1 30 844-873 115-144 (476)
206 3bu7_A Gentisate 1,2-dioxygena 43.7 10 0.00035 42.5 2.6 27 838-864 158-184 (394)
207 4a0k_B E3 ubiquitin-protein li 43.2 5 0.00017 37.9 0.0 26 220-252 83-108 (117)
208 2arc_A ARAC, arabinose operon 43.0 14 0.00047 34.1 3.0 30 837-866 51-80 (164)
209 3cjx_A Protein of unknown func 41.6 11 0.00039 37.2 2.3 33 847-879 85-126 (165)
210 1vfy_A Phosphatidylinositol-3- 40.9 9.1 0.00031 32.9 1.3 33 202-235 12-46 (73)
211 1dvp_A HRS, hepatocyte growth 40.7 7.7 0.00026 39.6 0.9 39 195-236 157-197 (220)
212 2kr4_A Ubiquitin conjugation f 39.9 12 0.0004 32.8 1.8 43 201-252 14-56 (85)
213 1x4w_A Hypothetical protein FL 39.5 12 0.00042 32.5 1.9 34 200-238 14-50 (67)
214 2y0o_A Probable D-lyxose ketol 39.4 11 0.00039 37.9 1.9 41 841-883 117-158 (175)
215 1wen_A Inhibitor of growth fam 38.9 17 0.00057 31.4 2.6 47 200-252 15-64 (71)
216 1wfh_A Zinc finger (AN1-like) 38.4 21 0.00072 30.8 3.1 34 200-238 14-47 (64)
217 3v43_A Histone acetyltransfera 38.0 12 0.00039 34.7 1.6 46 212-262 23-70 (112)
218 3zyq_A Hepatocyte growth facto 37.9 13 0.00043 38.4 2.0 33 202-235 165-199 (226)
219 3zyq_A Hepatocyte growth facto 37.4 68 0.0023 33.0 7.4 61 301-361 129-197 (226)
220 1vq8_T 50S ribosomal protein L 37.0 10 0.00034 36.3 1.0 42 815-858 14-55 (120)
221 1uij_A Beta subunit of beta co 36.7 12 0.0004 42.1 1.6 46 815-865 65-114 (416)
222 1fxz_A Glycinin G1; proglycini 36.5 15 0.0005 42.2 2.4 85 812-898 352-440 (476)
223 2ri7_A Nucleosome-remodeling f 35.8 8.8 0.0003 37.5 0.4 47 200-253 7-59 (174)
224 1wim_A KIAA0161 protein; ring 34.7 11 0.00038 33.1 0.8 51 201-252 5-60 (94)
225 2yt5_A Metal-response element- 34.7 5 0.00017 33.5 -1.3 49 199-251 4-59 (66)
226 3j21_U 50S ribosomal protein L 33.9 12 0.00042 35.8 1.0 40 816-857 18-57 (121)
227 3kv5_D JMJC domain-containing 33.8 17 0.00057 41.9 2.3 57 200-263 36-98 (488)
228 3mpx_A FYVE, rhogef and PH dom 33.4 8.9 0.0003 42.1 0.0 36 200-236 374-411 (434)
229 3nw0_A Non-structural maintena 33.2 33 0.0011 35.8 4.2 50 198-253 177-226 (238)
230 2ea7_A 7S globulin-1; beta bar 31.6 19 0.00066 40.7 2.3 26 841-866 102-127 (434)
231 3c3v_A Arachin ARAH3 isoform; 31.4 20 0.00067 41.7 2.4 102 775-878 351-453 (510)
232 1v5n_A PDI-like hypothetical p 30.7 17 0.00058 32.6 1.4 31 330-360 47-77 (89)
233 4gne_A Histone-lysine N-methyl 30.1 30 0.001 32.2 3.0 58 195-263 9-68 (107)
234 1xwh_A Autoimmune regulator; P 29.7 13 0.00044 31.4 0.4 48 199-251 6-53 (66)
235 2cav_A Protein (canavalin); vi 29.2 25 0.00085 39.9 2.7 27 842-868 128-155 (445)
236 2d5f_A Glycinin A3B4 subunit; 29.0 14 0.00049 42.5 0.7 121 775-899 346-467 (493)
237 1j58_A YVRK protein; cupin, de 28.8 26 0.00089 37.9 2.7 25 843-867 123-147 (385)
238 2o1q_A Putative acetyl/propion 28.4 20 0.00069 34.1 1.5 26 847-872 89-115 (145)
239 2zet_C Melanophilin; complex, 28.3 17 0.00057 35.9 0.9 35 329-363 67-104 (153)
240 2vrw_B P95VAV, VAV1, proto-onc 27.8 32 0.0011 37.6 3.1 38 326-363 353-393 (406)
241 1wem_A Death associated transc 25.9 35 0.0012 29.2 2.5 45 201-252 16-69 (76)
242 1zbd_B Rabphilin-3A; G protein 25.8 40 0.0014 32.5 3.1 37 328-364 53-92 (134)
243 2yw8_A RUN and FYVE domain-con 24.7 41 0.0014 29.5 2.7 35 326-361 15-52 (82)
244 3o70_A PHD finger protein 13; 24.6 18 0.0006 31.0 0.3 49 199-252 17-66 (68)
245 2jmo_A Parkin; IBR, E3 ligase, 24.6 47 0.0016 29.0 3.1 34 328-361 23-67 (80)
246 2kwj_A Zinc finger protein DPF 24.2 15 0.00052 34.0 -0.2 57 203-263 3-68 (114)
247 2o35_A Hypothetical protein DU 24.0 22 0.00075 33.2 0.8 13 225-237 42-54 (105)
248 2l43_A N-teminal domain from h 23.9 39 0.0013 30.2 2.4 48 200-252 24-74 (88)
249 3fyb_A Protein of unknown func 23.8 22 0.00076 33.1 0.8 13 225-237 41-53 (104)
250 3kgl_A Cruciferin; 11S SEED gl 23.8 29 0.00098 39.9 1.9 22 847-868 150-171 (466)
251 2xb1_A Pygopus homolog 2, B-ce 23.6 20 0.0007 33.0 0.6 46 201-252 3-60 (105)
252 2f42_A STIP1 homology and U-bo 23.5 29 0.00098 35.0 1.7 43 202-252 107-149 (179)
253 2yu4_A E3 SUMO-protein ligase 23.3 23 0.00079 31.3 0.8 50 201-252 7-58 (94)
254 1z2q_A LM5-1; membrane protein 23.1 59 0.002 28.5 3.4 36 325-361 16-54 (84)
255 3qac_A 11S globulin SEED stora 22.7 35 0.0012 39.1 2.4 34 847-880 135-168 (465)
256 3nw4_A Gentisate 1,2-dioxygena 22.5 42 0.0014 37.4 2.9 31 839-869 314-344 (368)
257 1wep_A PHF8; structural genomi 21.8 1.7E+02 0.0058 25.2 6.1 47 200-253 11-63 (79)
258 3lqh_A Histone-lysine N-methyl 21.6 64 0.0022 32.6 3.7 46 202-253 3-63 (183)
259 3c6w_A P28ING5, inhibitor of g 20.7 19 0.00064 30.0 -0.3 48 200-252 8-57 (59)
260 1x4u_A Zinc finger, FYVE domai 20.6 49 0.0017 29.0 2.4 35 326-361 10-47 (84)
261 3avr_A Lysine-specific demethy 20.3 66 0.0023 37.6 4.0 37 327-363 455-496 (531)
262 1zbd_B Rabphilin-3A; G protein 20.2 15 0.00053 35.4 -1.0 50 200-252 54-106 (134)
263 2jun_A Midline-1; B-BOX, TRIM, 20.2 56 0.0019 28.7 2.7 33 202-235 4-38 (101)
No 1
>2ypd_A Probable JMJC domain-containing histone demethyla PROT EIN 2C; oxidoreductase; 2.10A {Homo sapiens}
Probab=100.00 E-value=4.2e-129 Score=1060.86 Aligned_cols=352 Identities=32% Similarity=0.535 Sum_probs=272.8
Q ss_pred CCcCchhhHHHHHHHhhcCCCEEEEccccccCCCCCChhHHHHHHhhhccccccccCCceeEeecCCCceeecchhhhhc
Q 002333 497 TKIQEDEELFRFQKHWIKGEPVIVRNVLDKVTGLSWEPMVMWRALCENVDSEVSSKMSEVKAIDCLASCEVEISTRQFFK 576 (935)
Q Consensus 497 ~di~~~~~l~hFQ~hW~kGePVIVr~Vl~~~s~lsW~P~~mwra~~e~~~~~~~~~~~~vkaIDCld~~eVei~i~qFf~ 576 (935)
.|..+++|+.|||+||++|||||||||++++++++|+|++||++|++. .+++|||++|++++|++++||+
T Consensus 16 ~d~~~~~n~~~Fq~hW~~GePViVs~V~~~~~~~~W~Pe~~~~~~gd~----------~~~lidC~~~~~~~i~v~~Ff~ 85 (392)
T 2ypd_A 16 KDYKNSSNWKLFKECWKQGQPAVVSGVHKKMNISLWKAESISLDFGDH----------QADLLNCKDSIISNANVKEFWD 85 (392)
T ss_dssp CCTTCTTHHHHHHHHHTTTCCEEECCHHHHSCGGGGSHHHHHHHHTTS----------CCCCEETTTCCBCSCCHHHHHH
T ss_pred cCCCCcccHHHHHHHHhCCCcEEEechhhhCcCCccCHHHHHHHhcCc----------eeeeeeCCCCccccCcHHHHhh
Confidence 455556899999999999999999999999999999999999998642 3678999999999999999999
Q ss_pred cccCCc---cCCCCccceeecCCCCCCCchhhhcccchHHHHhCCCCcCcCCCCCccccccccCCCCCCCCCCCcchhhc
Q 002333 577 GYTQGR---TYDNFWPEMLKLKDWPPSDKFEDLMPRHCDEFISALPFQEYSDPRAGILNLAVKLPSGVLKPDLGPKTYIA 653 (935)
Q Consensus 577 Gy~~gr---~~~~~wp~mLKLKDWPps~~F~e~lP~h~~eFi~aLP~~EYT~pr~G~LNLAskLP~~~lkPDLGPK~YIA 653 (935)
||++++ +++++||+|||||||||+++|+++||+||+|||++|||||||||+ |+||||++||+++++||||||||||
T Consensus 86 Gf~~~~~r~~~~~g~p~~LKLKDWPp~~~F~e~lP~~~~df~~~LPlpEYt~p~-G~LNLAs~LP~~~~kPDLGPK~YiA 164 (392)
T 2ypd_A 86 GFEEVSKRQKNKSGETVVLKLKDWPSGEDFKTMMPARYEDLLKSLPLPEYCNPE-GKFNLASHLPGFFVRPDLGPRLCSA 164 (392)
T ss_dssp TSSBGGGC------CCCCEEECSSSBTHHHHHHSHHHHHHHHHHCSSHHHHSTT-CTTCCTTTSCGGGCC---CCEEEEE
T ss_pred hccccccCCcCCCCCcceeeecCCCChHHHHHHhHHHHHHHHHcCCchHhhCCC-ccchHHHhCCCCCCCCCCCcchhhh
Confidence 999875 357999999999999999999999999999999999999999985 9999999999999999999999999
Q ss_pred cccccccCCCCCcccccccccccchhhhcccccccchHhHHHHHHHHHHHHhhhhhhhhccCCCCccccCCCCCCCCCCC
Q 002333 654 YGVAEELGRGDSVTKLHCDMSDAVNILTHTEEVLLTEEQHSAVERLKKEHRAQDLKENLVQDGMDESIEEPNSDNNKEDT 733 (935)
Q Consensus 654 YG~~eelGrGDSvTkLH~DmSDAVNIL~htaev~~~~~q~~~i~kl~~~~~~q~~~e~~~~~~~~~~~~e~~~~~~~~~~ 733 (935)
||+++++|+|+|||||||||||||||||||++++... ..... ...+++.++ ++
T Consensus 165 YG~~~~~~~~~gvT~LH~DmsDaVNiL~h~~~~~~~~-~~~~~-~~l~~~~~~-------------------------~~ 217 (392)
T 2ypd_A 165 YGVVAAKDHDIGTTNLHIEVSDVVNILVYVGIAKGNG-ILSKA-GILKKFEEE-------------------------DL 217 (392)
T ss_dssp CCSTTTTCTTCCSEEEEECSSEEEEEEEEEECCBCTT-CCCHH-HHHHHHHTS-------------------------CC
T ss_pred cCcchhcccCCCcceeeeehhhhhhhhheecccCccc-cchhh-hhhhhhhhc-------------------------cc
Confidence 9999999999999999999999999999998654322 11111 122222111 12
Q ss_pred CcccccccccCCCCcccccccccccccCCccccCCCCCCccCCCceEEEeecCCChhHHHHHHHHHHHhhccccCCCCCc
Q 002333 734 DVSEINDSELLPSGIRGEFKMSRDEMQGTAFTCPHSEGTMVESGGALWDIFRRQDVPKLEAYLRKHFKEFRHVYCSPVEQ 813 (935)
Q Consensus 734 d~~~i~~~~~~~s~~~~~~k~~~~~~~g~~~~~~~~~g~~~~~~GAlWDIFRreDvpKLreyL~kh~~Ef~h~~~~pv~~ 813 (935)
|.. .. .++.+ ..+.+||+||||||||++|||+||++|++||. .++.+
T Consensus 218 d~~--~~-----------~r~~~----------------~~~~~GAlW~Ifr~~D~~klr~~L~~~~~e~~----~~~~~ 264 (392)
T 2ypd_A 218 DDI--LR-----------KRLKD----------------SSEIPGALWHIYAGKDVDKIREFLQKISKEQG----LEVLP 264 (392)
T ss_dssp CHH--HH-----------HHHTC----------------TTCCEEEEEEEECGGGHHHHHHHHHHHHHHHC---------
T ss_pred cHH--Hh-----------hhccC----------------CCCCCCceeeeeCHhhHHHHHHHHHHHHHhhC----CCccC
Confidence 200 00 00110 13578999999999999999999999999983 56788
Q ss_pred ccCCcccCccccCHHHHHHHHHHhCccceEEEeecCceeEecCCCccccccccccceecccccCccchHHHHHHHHHhhc
Q 002333 814 VIHPIHDQCFYLSSEHKKKLKEEFGVEPWTFEQKLGEAVFIPAGCPHQVRNLKSCTKVAVDFVSPENVDECLRLTKEFRL 893 (935)
Q Consensus 814 v~dPIHDQ~fYLt~ehk~rLkEEyGVEpWtf~Q~lGEAVFIPAGCPHQVRNLkSCIKVAlDFVSPEnV~eC~rLteEfR~ 893 (935)
+.||||||+||||++||++|+|||||+||||+|++|||||||||||||||||+||||||+||||||||++|++||+|||+
T Consensus 265 ~~dPihdq~~yL~~~~r~~L~ee~gv~~~~~~Q~~GeavfiPaG~~HQV~Nl~~~i~va~df~spe~~~~c~~lt~E~R~ 344 (392)
T 2ypd_A 265 EHDPIRDQSWYVNKKLRQRLLEEYGVRTCTLIQFLGDAIVLPAGALHQVQNFHSCIQVTEDFVSPEHLVESFHLTQELRL 344 (392)
T ss_dssp -CCHHHHTCCCCCHHHHHHHHHHHCCCCEEEEEETTCEEEECTTCEEEEEESSEEEEEEEEECCGGGHHHHHHHHHHC--
T ss_pred CCCcCcCCCEEecHHHHHHHHHhcCCeeEEEEEcCCCEEEecCCCHHHHhcccchhhHhhhhcChhhHHHHHHHHHHHhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCchhccccchhhhhheehhhhhhhhh
Q 002333 894 LPKNHRAREDKLEVYLVFIKRKCYVHE 920 (935)
Q Consensus 894 Lp~~H~akEDKLeVkkm~l~~~~~~~~ 920 (935)
|| +|++||||||||||+||++..+..
T Consensus 345 l~-~~~~~edkLqvk~m~~~av~~av~ 370 (392)
T 2ypd_A 345 LK-EEINYDDKLQVKNILYHAVKEMVR 370 (392)
T ss_dssp ---------------------------
T ss_pred cc-hhhhhHHHHHHHHHHHHHHHHHHH
Confidence 96 699999999999999999655443
No 2
>4gjz_A Lysine-specific demethylase 8; JMJC, beta barrel, Fe(II) and 2-oxoglutarate binding, oxidor; HET: AKG BME; 1.05A {Homo sapiens} PDB: 4gjy_A* 4aap_A* 3uyj_A*
Probab=99.19 E-value=1.3e-11 Score=123.71 Aligned_cols=35 Identities=29% Similarity=0.284 Sum_probs=32.0
Q ss_pred ccceEEEeecCceeEecCCCccccccccccceecc
Q 002333 839 VEPWTFEQKLGEAVFIPAGCPHQVRNLKSCTKVAV 873 (935)
Q Consensus 839 VEpWtf~Q~lGEAVFIPAGCPHQVRNLkSCIKVAl 873 (935)
+.++.++|.+||++|||+|..|||+||..||.|..
T Consensus 198 ~~~~~~~l~pGD~LyiP~gW~H~V~~l~~sisvn~ 232 (235)
T 4gjz_A 198 APFLSCILSPGEILFIPVKYWHYVRALDLSFSVSF 232 (235)
T ss_dssp CCCEEEEECTTCEEEECTTCEEEEEESSSEEEEEE
T ss_pred CCcEEEEECCCCEEEeCCCCcEEEEECCCEEEEEE
Confidence 57899999999999999999999999999887753
No 3
>3k2o_A Bifunctional arginine demethylase and lysyl-hydro JMJD6; structural genomics consortium, SGC, chromatin regulator, developmental protein; 1.75A {Homo sapiens} PDB: 3ld8_A 3ldb_A*
Probab=99.09 E-value=3.8e-10 Score=123.43 Aligned_cols=53 Identities=32% Similarity=0.444 Sum_probs=50.4
Q ss_pred CccceEEEeecCceeEecCCCccccccccccceecccccCccchHHHHHHHHH
Q 002333 838 GVEPWTFEQKLGEAVFIPAGCPHQVRNLKSCTKVAVDFVSPENVDECLRLTKE 890 (935)
Q Consensus 838 GVEpWtf~Q~lGEAVFIPAGCPHQVRNLkSCIKVAlDFVSPEnV~eC~rLteE 890 (935)
+..++.++|.+||++|||+|-.|||+||..||.|+..|++|.|+...+++|-+
T Consensus 252 ~~~~~~~~l~pGd~l~iP~gw~H~v~~~~~sisv~~~f~~~~nl~~~~~~~~~ 304 (336)
T 3k2o_A 252 EFKPLEILQKPGETVFVPGGWWHVVLNLDTTIAITQNFASSTNFPVVWHKTVR 304 (336)
T ss_dssp GGCCEEEEECTTCEEEECTTCEEEEEESSCEEEEEEEECCTTTHHHHHHHHHH
T ss_pred cCceEEEEECCCCEEEeCCCCcEEEecCCCeEEEEcccCCcccHHHHHHHHHh
Confidence 46889999999999999999999999999999999999999999999999964
No 4
>3al5_A HTYW5, JMJC domain-containing protein C2ORF60; tRNA modification enzyme, unknown function; 2.50A {Homo sapiens} PDB: 3al6_A*
Probab=98.85 E-value=1.9e-09 Score=117.36 Aligned_cols=42 Identities=19% Similarity=0.216 Sum_probs=39.5
Q ss_pred ccceEEEeecCceeEecCCCccccccccccceecccccCccc
Q 002333 839 VEPWTFEQKLGEAVFIPAGCPHQVRNLKSCTKVAVDFVSPEN 880 (935)
Q Consensus 839 VEpWtf~Q~lGEAVFIPAGCPHQVRNLkSCIKVAlDFVSPEn 880 (935)
+.++.+++.+||++|||+|..|||+||-.||.|..-|.++..
T Consensus 237 ~~~~~~~L~pGD~LyiP~gWwH~v~~l~~sisvn~~~~~~~~ 278 (338)
T 3al5_A 237 ARRYECSLEAGDVLFIPALWFHNVISEEFGVGVNIFWKHLPS 278 (338)
T ss_dssp CCEEEEEECTTCEEEECTTCEEEEEESSCEEEEEEEECSSCG
T ss_pred CCCEEEEECCCCEEEECCCCeEEEeeCCCEEEEEEEecCCcc
Confidence 579999999999999999999999999999999999988764
No 5
>3k3o_A PHF8, PHD finger protein 8; histone demethylase, chromatin modification, methylated H3K9, mental retardation, metal-BI phosphoprotein, zinc-finger; HET: AKG; 2.10A {Homo sapiens} PDB: 3k3n_A* 4do0_A* 2wwu_A*
Probab=98.83 E-value=2.7e-08 Score=110.28 Aligned_cols=79 Identities=22% Similarity=0.262 Sum_probs=60.4
Q ss_pred CccceEEEeecCceeEecCCCccccccccccceecccccCccchHHHHHHHH-HhhcCCchhccccchh---hhhheehh
Q 002333 838 GVEPWTFEQKLGEAVFIPAGCPHQVRNLKSCTKVAVDFVSPENVDECLRLTK-EFRLLPKNHRAREDKL---EVYLVFIK 913 (935)
Q Consensus 838 GVEpWtf~Q~lGEAVFIPAGCPHQVRNLkSCIKVAlDFVSPEnV~eC~rLte-EfR~Lp~~H~akEDKL---eVkkm~l~ 913 (935)
..+++.++|.+||++|||+|..|||.||..||-|+..|++..|+...++..+ |-|.= -.+|. ...+|++|
T Consensus 213 ~~~~~ev~l~pGEtLfIPsGWwH~V~nledSIai~~NFl~~~nl~~~l~~~~~E~~~~------~~~~f~fp~F~~~~w~ 286 (371)
T 3k3o_A 213 VDKCYKCSVKQGQTLFIPTGWIHAVLTPVDCLAFGGNFLHSLNIEMQLKAYEIEKRLS------TADLFRFPNFETICWY 286 (371)
T ss_dssp SSCCEEEEEETTCEEEECTTCEEEEEEEEEEEEEEEEECCSTTHHHHHHHHHHHHHHC----------CCCTTHHHHHHH
T ss_pred cCceEEEEECCCcEEEeCCCCeEEEecCCCeEEECCcccchhhHHHHHHHHHHHHhcC------CCcccccccHHHHHHH
Confidence 3689999999999999999999999999999999999999999999999877 43321 12222 23556666
Q ss_pred hhhhhhhhh
Q 002333 914 RKCYVHEIS 922 (935)
Q Consensus 914 ~~~~~~~~~ 922 (935)
.+-.+++.+
T Consensus 287 ~~~~~~~~~ 295 (371)
T 3k3o_A 287 VGKHILDIF 295 (371)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 655555543
No 6
>2yu1_A JMJC domain-containing histone demethylation PROT; JMJC-domain-containing histone demethylases, oxidoreductase; HET: AKG; 2.70A {Homo sapiens} PDB: 2yu2_A
Probab=98.83 E-value=2.3e-08 Score=113.38 Aligned_cols=53 Identities=21% Similarity=0.201 Sum_probs=49.3
Q ss_pred hCccceEEEeecCceeEecCCCccccccccccceecccccCccchHHHHHHHH
Q 002333 837 FGVEPWTFEQKLGEAVFIPAGCPHQVRNLKSCTKVAVDFVSPENVDECLRLTK 889 (935)
Q Consensus 837 yGVEpWtf~Q~lGEAVFIPAGCPHQVRNLkSCIKVAlDFVSPEnV~eC~rLte 889 (935)
+..+++.++|..||++|||+|.-|||.||..||-|+..|++.-|+..-+++++
T Consensus 261 ~~~~~~~v~l~pGE~LfIPsGWwH~V~nledsIait~NF~~~~nl~~~l~~~~ 313 (451)
T 2yu1_A 261 RVSDCQRIELKQGYTFVIPSGWIHAVYTPTDTLVFGGNFLHSFNIPMQLKIYN 313 (451)
T ss_dssp HSSCCEEEEECTTCEEEECTTCEEEEECSSCEEEEEEEECCSSSHHHHHHHHH
T ss_pred ccccceEEEECCCcEEEeCCCceEEEecCCCeEEEeeeeCCcccHHHHHHHHH
Confidence 34578999999999999999999999999999999999999999999888876
No 7
>3kv4_A PHD finger protein 8; epigenetics, histone CODE, covalent histone modifications, jumonji demethylase, mental retardation, metal-binding, zinc; HET: M3L MLY OGA; 2.19A {Homo sapiens}
Probab=98.78 E-value=1.3e-08 Score=115.10 Aligned_cols=79 Identities=22% Similarity=0.273 Sum_probs=62.7
Q ss_pred ccceEEEeecCceeEecCCCccccccccccceecccccCccchHHHHHHHH-HhhcCCchhccccchhh---hhheehhh
Q 002333 839 VEPWTFEQKLGEAVFIPAGCPHQVRNLKSCTKVAVDFVSPENVDECLRLTK-EFRLLPKNHRAREDKLE---VYLVFIKR 914 (935)
Q Consensus 839 VEpWtf~Q~lGEAVFIPAGCPHQVRNLkSCIKVAlDFVSPEnV~eC~rLte-EfR~Lp~~H~akEDKLe---Vkkm~l~~ 914 (935)
.+++.++|..||++|||+|..|||.||..||-|+..|++..|+..-++..+ |-|.- -.+|.. ..+|++|.
T Consensus 298 ~~~~~v~l~pGetlfIPsGWwH~V~nledsIai~~NF~~~~nl~~~l~~~~~E~~~~------~~~~~~~p~f~~~~w~~ 371 (447)
T 3kv4_A 298 DKCYKCSVKQGQTLFIPTGWIHAVLTPVDCLAFGGNFLHSLNIEMQLKAYEIEKRLS------TADLFRFPNFETICWYV 371 (447)
T ss_dssp SCCEEEEEETTCEEEECTTCEEEEEESSCEEEEEEEECCSTTHHHHHHHHHHHHHTT------CCGGGSCTTHHHHHHHH
T ss_pred cceEEEEECCCcEEecCCCCeEEEecCCCEEEEccccccccCHHHHHHHHHHHHhcC------CCccccccCHHHHHHHH
Confidence 589999999999999999999999999999999999999999999999887 43321 123333 35666666
Q ss_pred hhhhhhhhh
Q 002333 915 KCYVHEISS 923 (935)
Q Consensus 915 ~~~~~~~~~ 923 (935)
+-.+++.+-
T Consensus 372 ~~~~~~~~~ 380 (447)
T 3kv4_A 372 GKHILDIFR 380 (447)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 666666543
No 8
>3kv5_D JMJC domain-containing histone demethylation protein 1D; epigenetics, histone CODE, jumonji lysine demethylase, metal-binding, zinc, zinc-finger; HET: OGA; 2.39A {Homo sapiens} PDB: 3kv6_A*
Probab=98.75 E-value=2e-08 Score=114.79 Aligned_cols=51 Identities=24% Similarity=0.386 Sum_probs=48.4
Q ss_pred ccceEEEeecCceeEecCCCccccccccccceecccccCccchHHHHHHHH
Q 002333 839 VEPWTFEQKLGEAVFIPAGCPHQVRNLKSCTKVAVDFVSPENVDECLRLTK 889 (935)
Q Consensus 839 VEpWtf~Q~lGEAVFIPAGCPHQVRNLkSCIKVAlDFVSPEnV~eC~rLte 889 (935)
.+++.++|.+||++|||+|..|||.||..||-|...|++..|+...++..+
T Consensus 333 ~~~~~~~l~pGe~lfIPsGWwH~V~nledsIai~~NF~~~~nl~~~l~~~~ 383 (488)
T 3kv5_D 333 DKCYKCVVKQGHTLFVPTGWIHAVLTSQDCMAFGGNFLHNLNIGMQLRCYE 383 (488)
T ss_dssp SCCEEEEEETTCEEEECTTCEEEEEEEEEEEEEEEEECCSTTHHHHHHHHH
T ss_pred cceEEEeeCCCCEEEeCCCceEEeeCCCCeEEEccccCCccCHHHHHHHHH
Confidence 589999999999999999999999999999999999999999999888654
No 9
>3kv9_A JMJC domain-containing histone demethylation protein 1D; jumonji domain lysine demethylase, metal-binding, zinc, zinc-finger; 2.29A {Homo sapiens} PDB: 3kva_A* 3kvb_A* 3u78_A*
Probab=98.73 E-value=6.2e-08 Score=108.18 Aligned_cols=52 Identities=23% Similarity=0.358 Sum_probs=48.3
Q ss_pred CccceEEEeecCceeEecCCCccccccccccceecccccCccchHHHHHHHH
Q 002333 838 GVEPWTFEQKLGEAVFIPAGCPHQVRNLKSCTKVAVDFVSPENVDECLRLTK 889 (935)
Q Consensus 838 GVEpWtf~Q~lGEAVFIPAGCPHQVRNLkSCIKVAlDFVSPEnV~eC~rLte 889 (935)
..+++.++|.+||++|||+|..|||.||..||-|...|+++.|+...++..+
T Consensus 241 ~~~~~~v~l~pGe~lfIPsGW~H~V~nledSIai~~NFl~~~nl~~~l~~~~ 292 (397)
T 3kv9_A 241 VDKCYKCVVKQGHTLFVPTGWIHAVLTSQDCMAFGGNFLHNLNIGMQLRCYE 292 (397)
T ss_dssp SSCCEEEEEETTCEEEECTTCEEEEEEEEEEEEEEEEECCSTTHHHHHHHHH
T ss_pred cCceEEEEECCCCEEEeCCCCeEEccCCcCeEEECCcccCchhHHHHHHHHH
Confidence 3589999999999999999999999999999999999999999998887654
No 10
>3d8c_A Hypoxia-inducible factor 1 alpha inhibitor; FIH, HIF, DSBH, oxygenase, transcription, inhibitor oxoglutarate, asparaginyl hydroxylase; HET: AKG; 2.10A {Homo sapiens} PDB: 2ilm_A* 2w0x_A* 1h2l_A* 1h2m_A* 1h2n_A* 1yci_A* 2cgn_A 2cgo_A* 1h2k_A* 2wa3_A* 2wa4_A* 3od4_A* 3p3n_A* 3p3p_A* 2yc0_A* 2y0i_A* 2yde_A* 1mze_A* 1mzf_A* 2xum_A* ...
Probab=98.71 E-value=4.5e-09 Score=114.96 Aligned_cols=40 Identities=20% Similarity=0.299 Sum_probs=36.3
Q ss_pred CccceEEEeecCceeEecCCCcccccccc-ccceecccccC
Q 002333 838 GVEPWTFEQKLGEAVFIPAGCPHQVRNLK-SCTKVAVDFVS 877 (935)
Q Consensus 838 GVEpWtf~Q~lGEAVFIPAGCPHQVRNLk-SCIKVAlDFVS 877 (935)
.+.++.+++.+||++|||+|..|||+||. .++.|++.|..
T Consensus 257 ~~~~~~~~l~pGD~LyiP~gWwH~V~~l~d~~~sisvn~w~ 297 (349)
T 3d8c_A 257 NVVGYETVVGPGDVLYIPMYWWHHIESLLNGGITITVNFWY 297 (349)
T ss_dssp GCCEEEEEECTTCEEEECTTCEEEEEECTTSCCEEEEEEEE
T ss_pred cCCcEEEEECCCCEEEECCCCcEEEEEcCCCCcEEEEEEEc
Confidence 35799999999999999999999999998 58888888865
No 11
>3pua_A GRC5, PHD finger protein 2; alpha-ketoglutarate-Fe2+ dependent dioxygenases, histone TAI protein, protein binding; HET: OGA; 1.89A {Homo sapiens} PDB: 3pu3_A* 3ptr_B* 3pu8_B* 3pus_A*
Probab=98.62 E-value=1.7e-07 Score=104.61 Aligned_cols=79 Identities=19% Similarity=0.120 Sum_probs=62.0
Q ss_pred CccceEEEeecCceeEecCCCccccccccccceecccccCccchHHHHHHHH-HhhcCCchhccccchh---hhhheehh
Q 002333 838 GVEPWTFEQKLGEAVFIPAGCPHQVRNLKSCTKVAVDFVSPENVDECLRLTK-EFRLLPKNHRAREDKL---EVYLVFIK 913 (935)
Q Consensus 838 GVEpWtf~Q~lGEAVFIPAGCPHQVRNLkSCIKVAlDFVSPEnV~eC~rLte-EfR~Lp~~H~akEDKL---eVkkm~l~ 913 (935)
..+++.++|..||++|||+|..|||.||..||-|...||+..|+..-++..+ |-|.= -.+|. ...+|++|
T Consensus 240 ~~~~~ev~l~pGEtlfIPsGWwH~V~nledSIai~gNFl~~~nl~~~l~~~~~E~~~~------~~~~f~fp~F~~~~wy 313 (392)
T 3pua_A 240 VDKCYKCIVKQGQTLFIPSGWIYATLTPVDCLAFAGHFLHSLSVEMQMRAYEVERRLK------LGSLTQFPNFETACWY 313 (392)
T ss_dssp SSCCEEEEEETTCEEEECTTCEEEEEEEEEEEEEEEEECCTTCHHHHHHHHHHHHHHT------CCCSSCCTTHHHHHHH
T ss_pred ccceEEEEECCCcEEeeCCCceEEEecCCCEEEEcCcccChhhHHHHHHHHHHHHHhC------CCccCcCCChHHHHHH
Confidence 3689999999999999999999999999999999999999999999998887 54321 11222 23566666
Q ss_pred hhhhhhhhh
Q 002333 914 RKCYVHEIS 922 (935)
Q Consensus 914 ~~~~~~~~~ 922 (935)
.+-..++.+
T Consensus 314 ~~~~~l~~~ 322 (392)
T 3pua_A 314 MGKHLLEAF 322 (392)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 666655543
No 12
>3pur_A Lysine-specific demethylase 7 homolog; oxidoreductase-oxidoreductase inhibitor complex; HET: 2HG; 2.10A {Caenorhabditis elegans} PDB: 3n9l_A 3n9m_A* 3n9o_A* 3n9p_A* 3n9q_A* 3n9n_A* 3puq_A*
Probab=97.37 E-value=0.0001 Score=84.83 Aligned_cols=51 Identities=22% Similarity=0.234 Sum_probs=46.9
Q ss_pred ccceEEEeecCceeEecCCCccccccccccceecccccCccchHHHHHHHH
Q 002333 839 VEPWTFEQKLGEAVFIPAGCPHQVRNLKSCTKVAVDFVSPENVDECLRLTK 889 (935)
Q Consensus 839 VEpWtf~Q~lGEAVFIPAGCPHQVRNLkSCIKVAlDFVSPEnV~eC~rLte 889 (935)
.....++|..||++|||+|..|+|.|+..||-|...||+..||..-+++++
T Consensus 363 ~~~~~v~l~pGEtlfIPsGW~HaV~tleDSIaiggNFl~~~nl~~qlri~~ 413 (528)
T 3pur_A 363 GAVKRVVIKEGQTLLIPAGWIHAVLTPVDSLVFGGNFLHLGNLEMQMRVYH 413 (528)
T ss_dssp TCCEEEEEETTCEEEECTTCEEEEEEEEEEEEEEEEECCGGGHHHHHHHHH
T ss_pred ccEEEEEECCCCEEEecCCceEEEecCCCeEEEcCcccchhhHHHHHHHHH
Confidence 345689999999999999999999999999999999999999999888664
No 13
>2xxz_A Lysine-specific demethylase 6B; oxidoreductase, histone demethylation, oxygenase, chromatin modification; HET: 8XQ; 1.80A {Homo sapiens}
Probab=97.30 E-value=0.00029 Score=77.30 Aligned_cols=86 Identities=19% Similarity=0.301 Sum_probs=71.1
Q ss_pred CceEEEeecCCChhHHHHHHHHHHHhhccccCCCCCcccCCcccCccccCHHHHHHHHHHhCccceEEEeecCceeEecC
Q 002333 777 GGALWDIFRRQDVPKLEAYLRKHFKEFRHVYCSPVEQVIHPIHDQCFYLSSEHKKKLKEEFGVEPWTFEQKLGEAVFIPA 856 (935)
Q Consensus 777 ~GAlWDIFRreDvpKLreyL~kh~~Ef~h~~~~pv~~v~dPIHDQ~fYLt~ehk~rLkEEyGVEpWtf~Q~lGEAVFIPA 856 (935)
+--+|=.-..+.+.+++++++++. .| +|.+.++++.+- |+ +.||.=+.|+|++||.|+|++
T Consensus 233 ~~~~Wy~VP~e~~~~~e~l~~k~~--------------~d-~~~~~~~~~p~~---L~-~~gIPvyr~~QkpGd~Vi~~P 293 (332)
T 2xxz_A 233 GDCEWFAVHEHYWETISAFCDRHG--------------VD-YLTGSWWPILDD---LY-ASNIPVYRFVQRPGDLVWINA 293 (332)
T ss_dssp SCEEEEEECGGGHHHHHHHHHHTT--------------CC-TTTSCBCCCHHH---HH-HTTCCCEEEEECTTCEEEECT
T ss_pred CceEEEEECHHHHHHHHHHHHhcC--------------Cc-hhhceecCCHHH---HH-hCCCCeEEEEECCCCEEEECC
Confidence 456899999999999999998632 12 234567776643 33 359999999999999999999
Q ss_pred CCccccccccccceecccccCccch
Q 002333 857 GCPHQVRNLKSCTKVAVDFVSPENV 881 (935)
Q Consensus 857 GCPHQVRNLkSCIKVAlDFVSPEnV 881 (935)
||-|||.|.=-|+++|..|..|...
T Consensus 294 gayH~v~n~G~~~n~awN~a~~~~~ 318 (332)
T 2xxz_A 294 GTVHWVQATGWCNNIAWNVGPLTAY 318 (332)
T ss_dssp TCEEEEEESSSEEEEEEEEESCTTG
T ss_pred CceEEEEecceeeEEEEEeCCCcHH
Confidence 9999999999999999999999765
No 14
>3avr_A Lysine-specific demethylase 6A; cupin superfamily, TRI/dimethyllysine demethylase, oxidoredu structural protein complex; HET: M3L OGA EDO; 1.80A {Homo sapiens} PDB: 3avs_A*
Probab=97.04 E-value=0.00058 Score=78.95 Aligned_cols=89 Identities=21% Similarity=0.293 Sum_probs=73.5
Q ss_pred CCceEEEeecCCChhHHHHHHHHHHHhhccccCCCCCcccCCcccCccccCHHHHHHHHHHhCccceEEEeecCceeEec
Q 002333 776 SGGALWDIFRRQDVPKLEAYLRKHFKEFRHVYCSPVEQVIHPIHDQCFYLSSEHKKKLKEEFGVEPWTFEQKLGEAVFIP 855 (935)
Q Consensus 776 ~~GAlWDIFRreDvpKLreyL~kh~~Ef~h~~~~pv~~v~dPIHDQ~fYLt~ehk~rLkEEyGVEpWtf~Q~lGEAVFIP 855 (935)
.+-.+|=.-..++..|++++++++. .|. +...++++.+. |+ +.||.-+.|+|++||.|+++
T Consensus 291 gg~~~Wy~VP~e~~~k~e~l~~k~~--------------~~~-~~~~~~~~p~~---L~-~~gIPvyr~vQkpGd~Vi~~ 351 (531)
T 3avr_A 291 PGDCEWFVVPEGYWGVLNDFCEKNN--------------LNF-LMGSWWPNLED---LY-EANVPVYRFIQRPGDLVWIN 351 (531)
T ss_dssp ESCEEEEEECGGGHHHHHHHHHHTT--------------CCT-TTSCBCCCHHH---HH-HTTCCCEEEEECTTCEEEEC
T ss_pred CCCeEEEEeCHHHHHHHHHHHHHcC--------------CCh-hhceeecCHHH---HH-hCCCCeEEEEECCCCEEEEC
Confidence 3456899999999999999998651 233 34567777553 33 35999999999999999999
Q ss_pred CCCccccccccccceecccccCccchHH
Q 002333 856 AGCPHQVRNLKSCTKVAVDFVSPENVDE 883 (935)
Q Consensus 856 AGCPHQVRNLkSCIKVAlDFVSPEnV~e 883 (935)
+||.|||.|+=-|+++|..|..|.-+.-
T Consensus 352 PgayH~v~n~G~~~n~awN~a~~~~~q~ 379 (531)
T 3avr_A 352 AGTVHWVQAIGWCNNIAWNVGPLTACQY 379 (531)
T ss_dssp TTCEEEEEESSSEEEEEEEECCSSHHHH
T ss_pred CCceEEEEecceeeeeEEEeccCchHHH
Confidence 9999999999999999999999996653
No 15
>4ask_A Lysine-specific demethylase 6B; oxidoreductase, KDM6B, GSK-J1, inhibitor, lysine specific HI demethylase; HET: K0I; 1.86A {Homo sapiens} PDB: 2xue_A* 4eyu_A* 4ez4_A* 4ezh_A*
Probab=96.43 E-value=0.0025 Score=73.08 Aligned_cols=88 Identities=18% Similarity=0.272 Sum_probs=71.6
Q ss_pred CCceEEEeecCCChhHHHHHHHHHHHhhccccCCCCCcccCCcccCccccCHHHHHHHHHHhCccceEEEeecCceeEec
Q 002333 776 SGGALWDIFRRQDVPKLEAYLRKHFKEFRHVYCSPVEQVIHPIHDQCFYLSSEHKKKLKEEFGVEPWTFEQKLGEAVFIP 855 (935)
Q Consensus 776 ~~GAlWDIFRreDvpKLreyL~kh~~Ef~h~~~~pv~~v~dPIHDQ~fYLt~ehk~rLkEEyGVEpWtf~Q~lGEAVFIP 855 (935)
.+--+|=.=..+...+++++++++.. |. +.+.++.+.+. |+ +.||.=+.|+|++||.|+++
T Consensus 266 gg~c~WY~VP~e~~~k~e~l~~k~~~--------------d~-l~~~~~pspe~---L~-kagIPvyr~iQkPGdfVit~ 326 (510)
T 4ask_A 266 PGDCEWFAVHEHYWETISAFCDRHGV--------------DY-LTGSWWPILDD---LY-ASNIPVYRFVQRPGDLVWIN 326 (510)
T ss_dssp ESCEEEEEECGGGHHHHHHHHHHTTC--------------CT-TTSCBCCCHHH---HH-HTTCCCEEEEECTTCEEEEC
T ss_pred CCceeEEEECHHHHHHHHHHHHHhCc--------------ch-hhccccCCHHH---HH-hCCCCeEEEEECCCCEEEEC
Confidence 34569999999999999999986421 22 33667776653 33 47999999999999999999
Q ss_pred CCCccccccccccceecccccCccchH
Q 002333 856 AGCPHQVRNLKSCTKVAVDFVSPENVD 882 (935)
Q Consensus 856 AGCPHQVRNLkSCIKVAlDFVSPEnV~ 882 (935)
+|+.|+|+|.==|+++|-.|.-|-...
T Consensus 327 PgtyH~Vqs~Gf~~niaWNvap~t~~q 353 (510)
T 4ask_A 327 AGTVHWVQATGWCNNIAWNVGPLTAYQ 353 (510)
T ss_dssp TTCEEEEEESSSEEEEEEEECBSSHHH
T ss_pred CCceEEEEecCeeeeeEEEecCCCHHH
Confidence 999999999999999999999885443
No 16
>3dxt_A JMJC domain-containing histone demethylation PROT; JMJD2D, histone demethylase, H3K9, jumonji domain-CONT protein 2D, oxidoreductase; 1.80A {Homo sapiens} PDB: 3dxu_A* 4hon_A* 4hoo_A 2w2i_A*
Probab=95.94 E-value=0.0082 Score=66.42 Aligned_cols=94 Identities=21% Similarity=0.215 Sum_probs=78.9
Q ss_pred eEEEeecCCChhHHHHHHHHHHHhhccccCCCCCcccCCcccCccccCHHHHHHHHHHhCccceEEEeecCceeEecCCC
Q 002333 779 ALWDIFRRQDVPKLEAYLRKHFKEFRHVYCSPVEQVIHPIHDQCFYLSSEHKKKLKEEFGVEPWTFEQKLGEAVFIPAGC 858 (935)
Q Consensus 779 AlWDIFRreDvpKLreyL~kh~~Ef~h~~~~pv~~v~dPIHDQ~fYLt~ehk~rLkEEyGVEpWtf~Q~lGEAVFIPAGC 858 (935)
-+|=.-..++..|+++++++.+.+.- ..|. +=+|.+.+.+++.. |+ +.||.-.+++|++||.|++-.|+
T Consensus 210 K~WY~VP~~~~~kfE~l~k~~~p~~~-~~c~------~fL~h~~~lisP~~---L~-~~GIpv~~~vQ~pGEfViTfP~a 278 (354)
T 3dxt_A 210 KTWYVVPPEHGQRLERLARELFPGSS-RGCG------AFLRHKVALISPTV---LK-ENGIPFNRITQEAGEFMVTFPYG 278 (354)
T ss_dssp EEEEEECGGGHHHHHHHHHHHSHHHH-HHCT------TGGGGCCEEECHHH---HH-HTTCCCEEEEECTTCEEEECTTC
T ss_pred eEEEEeCHHHHHHHHHHHHHhCchhh-hhcH------HHHhcCcccCCHHH---HH-HCCCceEEEEeCCCcEEEECCCc
Confidence 49999999999999999998865421 1232 22566788899873 44 47999999999999999999999
Q ss_pred ccccccccccceecccccCccchHH
Q 002333 859 PHQVRNLKSCTKVAVDFVSPENVDE 883 (935)
Q Consensus 859 PHQVRNLkSCIKVAlDFVSPEnV~e 883 (935)
=|.|.|+--++..|..|..|+=+..
T Consensus 279 YH~gfn~Gfn~aEAvNFA~~~Wl~~ 303 (354)
T 3dxt_A 279 YHAGFNHGFNCAEAINFATPRWIDY 303 (354)
T ss_dssp EEEEEESSSEEEEEEEECCGGGHHH
T ss_pred eEEEeeccccHhHhhccCcHHHHHh
Confidence 9999999999999999999998764
No 17
>3opt_A DNA damage-responsive transcriptional repressor R; RPH1, histone demethylase, catalytic core, oxidoreductase; HET: DNA AKG; 2.20A {Saccharomyces cerevisiae} PDB: 3opw_A*
Probab=94.98 E-value=0.03 Score=62.33 Aligned_cols=93 Identities=19% Similarity=0.213 Sum_probs=74.8
Q ss_pred eEEEeecCCChhHHHHHHHHHHHhhccccCCCCCcccCCcccCccccCHHHHHHHHHHhCccceEEEeecCceeEecCCC
Q 002333 779 ALWDIFRRQDVPKLEAYLRKHFKEFRHVYCSPVEQVIHPIHDQCFYLSSEHKKKLKEEFGVEPWTFEQKLGEAVFIPAGC 858 (935)
Q Consensus 779 AlWDIFRreDvpKLreyL~kh~~Ef~h~~~~pv~~v~dPIHDQ~fYLt~ehk~rLkEEyGVEpWtf~Q~lGEAVFIPAGC 858 (935)
-+|=.-..+++.|+++++++++.+.- ..|. +=+|...+.+++. .|+ +.||.-.+++|++||.|++=.|+
T Consensus 253 K~WY~VP~~~~~kfE~l~k~~~p~~~-~~c~------~fL~h~~~lisP~---~L~-~~GIpv~r~vQ~pGEfViTfP~a 321 (373)
T 3opt_A 253 KQWYSIPQEDRFKFYKFMQEQFPEEA-KNCP------EFLRHKMFLASPK---LLQ-ENGIRCNEIVHHEGEFMITYPYG 321 (373)
T ss_dssp EEEEECCGGGHHHHHHHHHHSSHHHH-SSCS------SCTTTSCEEECHH---HHH-TTTCCCEEEEECTTCEEEECTTC
T ss_pred eEEEEeCHHHHHHHHHHHHHhChhhh-hhCH------HHhhCCcccCCHH---HHH-hcCCceEEEEECCCCEEEECCCc
Confidence 48999999999999999998876421 1232 2356677888885 344 57999999999999999999999
Q ss_pred ccccccccccceecccccCccchH
Q 002333 859 PHQVRNLKSCTKVAVDFVSPENVD 882 (935)
Q Consensus 859 PHQVRNLkSCIKVAlDFVSPEnV~ 882 (935)
=|.|.|+--++..|..|..|+=+.
T Consensus 322 YH~gfn~Gfn~aEAvNFA~~~Wl~ 345 (373)
T 3opt_A 322 YHAGFNYGYNLAESVNFALEEWLP 345 (373)
T ss_dssp CEEEEESSSEEEEEEEECCC----
T ss_pred eEEEEecCccHHHHHccCcHHHHH
Confidence 999999999999999999997654
No 18
>2ox0_A JMJC domain-containing histone demethylation PROT; double-stranded beta helix, demethylase, oxygenase, SGC, STR genomics, structural genomics consortium, oxidoreductase; HET: MLY ALY OGA; 1.95A {Homo sapiens} PDB: 2oq7_A* 2os2_A* 2ot7_A* 2oq6_A* 2vd7_A* 2ybk_A* 2ybp_A* 2ybs_A* 3njy_A* 3pdq_A* 3u4s_A* 2p5b_A* 2q8c_A* 2q8d_A* 2q8e_A* 2gp5_A* 2gp3_A* 2wwj_A* 2pxj_A* 2xml_A*
Probab=94.66 E-value=0.047 Score=61.04 Aligned_cols=95 Identities=16% Similarity=0.148 Sum_probs=78.7
Q ss_pred ceEEEeecCCChhHHHHHHHHHHHhhccccCCCCCcccCCcccCccccCHHHHHHHHHHhCccceEEEeecCceeEecCC
Q 002333 778 GALWDIFRRQDVPKLEAYLRKHFKEFRHVYCSPVEQVIHPIHDQCFYLSSEHKKKLKEEFGVEPWTFEQKLGEAVFIPAG 857 (935)
Q Consensus 778 GAlWDIFRreDvpKLreyL~kh~~Ef~h~~~~pv~~v~dPIHDQ~fYLt~ehk~rLkEEyGVEpWtf~Q~lGEAVFIPAG 857 (935)
--+|=.=.++++.|+++++++++-+.-. .|. +=+|...+.++++. |+ +.||.-.+++|++||.|++=.|
T Consensus 227 pK~WY~VP~~~~~kfE~l~~~~~P~~~~-~~~------~~L~h~~~~isP~~---L~-~~GIpv~r~vQ~pGEfViTfP~ 295 (381)
T 2ox0_A 227 PKSWYSVPPEHGKRLERLAKGFFPGSAQ-SCE------AFLRHKMTLISPLM---LK-KYGIPFDKVTQEAGEFMITFPY 295 (381)
T ss_dssp CEEEEEECGGGHHHHHHHHHHHSHHHHH-HCT------TGGGGSCEEECHHH---HH-HTTCCCEEEEECTTCEEEECTT
T ss_pred ceEEEecCHHHHHHHHHHHHHhChhhhh-cch------HHhhccccccCHHH---HH-HCCCceEEEEecCCCEEEECCC
Confidence 3589999999999999999998764211 232 33566788888853 33 5799999999999999999999
Q ss_pred CccccccccccceecccccCccchHH
Q 002333 858 CPHQVRNLKSCTKVAVDFVSPENVDE 883 (935)
Q Consensus 858 CPHQVRNLkSCIKVAlDFVSPEnV~e 883 (935)
+=|.|.|+=-++..|..|..|+=+..
T Consensus 296 aYH~gfn~GfN~aEAvNFA~~~Wl~~ 321 (381)
T 2ox0_A 296 GYHAGFNHGFNCAESTNFATRRWIEY 321 (381)
T ss_dssp CEEEEEECSSEEEEEEEECCTTHHHH
T ss_pred cEEEeecCcccHHHHhccCcHHHHHH
Confidence 99999999999999999999886654
No 19
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=92.67 E-value=0.082 Score=44.88 Aligned_cols=52 Identities=27% Similarity=0.643 Sum_probs=36.5
Q ss_pred CCCcccccccCCCCceEecCcCCCCcccHhHHhhhCCCCChhhhhccCCCCCCcc
Q 002333 200 ERIKCHQCMKSERKYVVPCGKCRTKVYCIQCIKQWYPKMSELDVAEICPFCRRNC 254 (935)
Q Consensus 200 ~~~~CHQCrqk~~~~~v~C~~C~r~~FC~~CL~~rY~e~~~edv~~~CP~CRg~C 254 (935)
+...|.-|...-...++ ..|+ ..||..||..|+...........||.||...
T Consensus 18 ~~~~C~IC~~~~~~p~~--~~Cg-H~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~ 69 (85)
T 2ecw_A 18 EEVTCPICLELLKEPVS--ADCN-HSFCRACITLNYESNRNTDGKGNCPVCRVPY 69 (85)
T ss_dssp TTTSCTTTCSCCSSCEE--CTTS-CCBCHHHHHHHHHHSBCTTSCBCCTTTCCCC
T ss_pred cCCCCcCCChhhCccee--CCCC-CHHHHHHHHHHHHhccCCCCCCCCCCCCCcC
Confidence 34789999876554443 3599 8999999999985422123367999998753
No 20
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=90.90 E-value=0.23 Score=41.38 Aligned_cols=48 Identities=27% Similarity=0.614 Sum_probs=34.9
Q ss_pred CCCcccccccCCCCceEecCcCCCCcccHhHHhhhCCCCChhhhhccCCCCCCc
Q 002333 200 ERIKCHQCMKSERKYVVPCGKCRTKVYCIQCIKQWYPKMSELDVAEICPFCRRN 253 (935)
Q Consensus 200 ~~~~CHQCrqk~~~~~v~C~~C~r~~FC~~CL~~rY~e~~~edv~~~CP~CRg~ 253 (935)
+...|--|...-...++. .|+ ..||..||..|.... .....||.||..
T Consensus 19 ~~~~C~IC~~~~~~~~~~--~Cg-H~fC~~Ci~~~~~~~---~~~~~CP~Cr~~ 66 (73)
T 2ysl_A 19 EEVICPICLDILQKPVTI--DCG-HNFCLKCITQIGETS---CGFFKCPLCKTS 66 (73)
T ss_dssp CCCBCTTTCSBCSSEEEC--TTC-CEEEHHHHHHHCSSS---CSCCCCSSSCCC
T ss_pred cCCEeccCCcccCCeEEc--CCC-ChhhHHHHHHHHHcC---CCCCCCCCCCCc
Confidence 347788888765543433 799 889999999998521 234689999874
No 21
>2opk_A Hypothetical protein; putative mannose-6-phosphate isomerase, structural genomics, center for structural genomics, JCSG; 2.10A {Ralstonia eutropha}
Probab=90.87 E-value=0.069 Score=48.79 Aligned_cols=24 Identities=25% Similarity=0.422 Sum_probs=20.6
Q ss_pred EEeecCceeEecCCCccccccccc
Q 002333 844 FEQKLGEAVFIPAGCPHQVRNLKS 867 (935)
Q Consensus 844 f~Q~lGEAVFIPAGCPHQVRNLkS 867 (935)
+.=..||.|+||||+||+++|.-.
T Consensus 75 ~~l~~Gd~i~ipa~~~H~~~n~~~ 98 (112)
T 2opk_A 75 RVMRPGDWLHVPAHCRHRVAWTDG 98 (112)
T ss_dssp EEECTTEEEEECTTCCEEEEEECS
T ss_pred EEECCCCEEEECCCCcEEEEeCCC
Confidence 444679999999999999999864
No 22
>1yhf_A Hypothetical protein SPY1581; structural genomics, conserved hypothetical protein, PSI, PR structure initiative; 2.00A {Streptococcus pyogenes} SCOP: b.82.1.9
Probab=90.64 E-value=0.11 Score=46.14 Aligned_cols=58 Identities=26% Similarity=0.448 Sum_probs=38.7
Q ss_pred cCCcccCccccCHHHHHHHHHHhCccceEEEeecCceeEecCCCccccccccccceecccccCcc
Q 002333 815 IHPIHDQCFYLSSEHKKKLKEEFGVEPWTFEQKLGEAVFIPAGCPHQVRNLKSCTKVAVDFVSPE 879 (935)
Q Consensus 815 ~dPIHDQ~fYLt~ehk~rLkEEyGVEpWtf~Q~lGEAVFIPAGCPHQVRNLkSCIKVAlDFVSPE 879 (935)
.|| +++-+|+..-.- ++.+..=++.=..||+++||+|.||+++|...|.-+.+ ++.||
T Consensus 57 ~H~-~~e~~~vl~G~~-----~~~~~~~~~~l~~Gd~~~ip~~~~H~~~~~~~~~~~~v-~~~~~ 114 (115)
T 1yhf_A 57 SSP-GDAMVTILSGLA-----EITIDQETYRVAEGQTIVMPAGIPHALYAVEAFQMLLV-VVKPE 114 (115)
T ss_dssp CCS-SEEEEEEEESEE-----EEEETTEEEEEETTCEEEECTTSCEEEEESSCEEEEEE-EECSC
T ss_pred ECC-CcEEEEEEeCEE-----EEEECCEEEEECCCCEEEECCCCCEEEEECCCceEEEE-EEccC
Confidence 455 456666654432 13345556777899999999999999999886544433 34444
No 23
>2pfw_A Cupin 2, conserved barrel domain protein; cupin domain, struc genomics, joint center for structural genomics, JCSG; 1.90A {Shewanella frigidimarina}
Probab=90.36 E-value=0.092 Score=46.84 Aligned_cols=58 Identities=21% Similarity=0.264 Sum_probs=39.3
Q ss_pred ccCCcccCccccCHHHHHHHHHHhCccceEEEeecCceeEecCCCccccccccccceecccccCcc
Q 002333 814 VIHPIHDQCFYLSSEHKKKLKEEFGVEPWTFEQKLGEAVFIPAGCPHQVRNLKSCTKVAVDFVSPE 879 (935)
Q Consensus 814 v~dPIHDQ~fYLt~ehk~rLkEEyGVEpWtf~Q~lGEAVFIPAGCPHQVRNLkSCIKVAlDFVSPE 879 (935)
..|| .+|-+|+-.-.- ++-|..=++.=..||+++||+|.||+++|...|. .+.+.+|.
T Consensus 50 H~H~-~~e~~~vl~G~~-----~~~~~~~~~~l~~Gd~~~ip~~~~H~~~~~~~~~--~l~v~~p~ 107 (116)
T 2pfw_A 50 HAHR-HSQVSYVVEGEF-----HVNVDGVIKVLTAGDSFFVPPHVDHGAVCPTGGI--LIDTFSPA 107 (116)
T ss_dssp ECCS-SEEEEEEEEECE-----EEEETTEEEEECTTCEEEECTTCCEEEEESSCEE--EEEEEESC
T ss_pred EECC-cceEEEEEeeEE-----EEEECCEEEEeCCCCEEEECcCCceeeEeCCCcE--EEEEECCc
Confidence 4566 666666643322 2334444677789999999999999999998763 34444553
No 24
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=90.23 E-value=0.33 Score=45.98 Aligned_cols=43 Identities=28% Similarity=0.827 Sum_probs=32.6
Q ss_pred CcccccccCCCCceEecCcCCCCcccHhHHhhhCCCCChhhhhccCCCCCCc
Q 002333 202 IKCHQCMKSERKYVVPCGKCRTKVYCIQCIKQWYPKMSELDVAEICPFCRRN 253 (935)
Q Consensus 202 ~~CHQCrqk~~~~~v~C~~C~r~~FC~~CL~~rY~e~~~edv~~~CP~CRg~ 253 (935)
.+|--|...-...++ ..|+ ..||..||..|... ...||.||..
T Consensus 54 ~~C~iC~~~~~~~~~--~~Cg-H~fc~~Ci~~~~~~------~~~CP~Cr~~ 96 (138)
T 4ayc_A 54 LQCIICSEYFIEAVT--LNCA-HSFCSYCINEWMKR------KIECPICRKD 96 (138)
T ss_dssp SBCTTTCSBCSSEEE--ETTS-CEEEHHHHHHHTTT------CSBCTTTCCB
T ss_pred CCCcccCcccCCceE--CCCC-CCccHHHHHHHHHc------CCcCCCCCCc
Confidence 579999866554443 3699 89999999999854 3479999874
No 25
>3ht1_A REMF protein; cupin fold, Zn-binding, antibiotic biosynthesis, resistomycin, metalloprotein, cyclase, lyase; 1.20A {Streptomyces resistomycificus} PDB: 3ht2_A
Probab=90.18 E-value=0.15 Score=46.94 Aligned_cols=41 Identities=32% Similarity=0.244 Sum_probs=31.3
Q ss_pred ccceEEEeecCceeEecCCCccccccccccceecccccCcc
Q 002333 839 VEPWTFEQKLGEAVFIPAGCPHQVRNLKSCTKVAVDFVSPE 879 (935)
Q Consensus 839 VEpWtf~Q~lGEAVFIPAGCPHQVRNLkSCIKVAlDFVSPE 879 (935)
|..=++.=..||+|+||+|.||+++|...---+.+-+++|.
T Consensus 76 ~~~~~~~l~~Gd~~~ip~~~~H~~~~~~~~~~~~l~i~~~~ 116 (145)
T 3ht1_A 76 DQGRTEEVGPGEAIFIPRGEPHGFVTGPGQTCRFLVVAPCE 116 (145)
T ss_dssp GGTEEEEECTTCEEEECTTCCBEEECCTTCCEEEEEEEESC
T ss_pred ECCEEEEECCCCEEEECCCCeEEeEcCCCCCEEEEEEECCC
Confidence 44556777899999999999999999876544555555554
No 26
>3fjs_A Uncharacterized protein with RMLC-like cupin fold; structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.90A {Ralstonia eutropha JMP134}
Probab=90.10 E-value=0.12 Score=47.18 Aligned_cols=42 Identities=21% Similarity=0.402 Sum_probs=31.1
Q ss_pred hCccceEEEeecCceeEecCCCccccccccccceecccccCcc
Q 002333 837 FGVEPWTFEQKLGEAVFIPAGCPHQVRNLKSCTKVAVDFVSPE 879 (935)
Q Consensus 837 yGVEpWtf~Q~lGEAVFIPAGCPHQVRNLkSCIKVAlDFVSPE 879 (935)
+-|..=++.=..||+|+||+|.||+++|...+. +.+-+|.|.
T Consensus 69 ~~i~~~~~~l~~Gd~i~ip~~~~H~~~~~~~~~-~~~~~v~p~ 110 (114)
T 3fjs_A 69 IGVDGAQRRLHQGDLLYLGAGAAHDVNAITNTS-LLVTVVLVD 110 (114)
T ss_dssp EEETTEEEEECTTEEEEECTTCCEEEEESSSEE-EEEEEECC-
T ss_pred EEECCEEEEECCCCEEEECCCCcEEEEeCCCcE-EEEEEEeCC
Confidence 445555777889999999999999999997654 333555554
No 27
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=89.90 E-value=0.2 Score=42.93 Aligned_cols=47 Identities=23% Similarity=0.625 Sum_probs=35.4
Q ss_pred CCCcccccccCCCCceEecCcCCCCcccHhHHhhhCCCCChhhhhccCCCCCCccc
Q 002333 200 ERIKCHQCMKSERKYVVPCGKCRTKVYCIQCIKQWYPKMSELDVAEICPFCRRNCN 255 (935)
Q Consensus 200 ~~~~CHQCrqk~~~~~v~C~~C~r~~FC~~CL~~rY~e~~~edv~~~CP~CRg~CN 255 (935)
....|--|...-...++ ..|+ ..||..||..|+.. ...||.||..-+
T Consensus 14 ~~~~C~IC~~~~~~p~~--~~Cg-H~fC~~Ci~~~~~~------~~~CP~Cr~~~~ 60 (81)
T 2csy_A 14 IPFRCFICRQAFQNPVV--TKCR-HYFCESCALEHFRA------TPRCYICDQPTG 60 (81)
T ss_dssp CCSBCSSSCSBCCSEEE--CTTS-CEEEHHHHHHHHHH------CSBCSSSCCBCC
T ss_pred CCCCCcCCCchhcCeeE--ccCC-CHhHHHHHHHHHHC------CCcCCCcCcccc
Confidence 44688888776555443 5799 89999999999842 458999998654
No 28
>3lag_A Uncharacterized protein RPA4178; functionally unknown protein, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.15A {Rhodopseudomonas palustris}
Probab=89.85 E-value=0.11 Score=46.85 Aligned_cols=24 Identities=33% Similarity=0.387 Sum_probs=20.7
Q ss_pred EEeecCceeEecCCCccccccccc
Q 002333 844 FEQKLGEAVFIPAGCPHQVRNLKS 867 (935)
Q Consensus 844 f~Q~lGEAVFIPAGCPHQVRNLkS 867 (935)
+.-..||++|||+|.+|++.|.-+
T Consensus 61 ~~l~~G~~~~ip~G~~H~~~N~g~ 84 (98)
T 3lag_A 61 AQLKTGRSYARKAGVQHDVRNEST 84 (98)
T ss_dssp CCBCTTCCEEECTTCEEEEBCCSS
T ss_pred EEecCCcEEEEcCCCcEECEECCC
Confidence 445789999999999999999754
No 29
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=89.81 E-value=0.36 Score=40.39 Aligned_cols=45 Identities=24% Similarity=0.586 Sum_probs=33.0
Q ss_pred CCCcccccccCCCCceEecCcCCCCcccHhHHhhhCCCCChhhhhccCCCCCCc
Q 002333 200 ERIKCHQCMKSERKYVVPCGKCRTKVYCIQCIKQWYPKMSELDVAEICPFCRRN 253 (935)
Q Consensus 200 ~~~~CHQCrqk~~~~~v~C~~C~r~~FC~~CL~~rY~e~~~edv~~~CP~CRg~ 253 (935)
+...|--|...-...++. .|+ ..||..||.+|+... ..||.||..
T Consensus 14 ~~~~C~IC~~~~~~~~~~--~Cg-H~fC~~Ci~~~~~~~------~~CP~Cr~~ 58 (71)
T 2d8t_A 14 TVPECAICLQTCVHPVSL--PCK-HVFCYLCVKGASWLG------KRCALCRQE 58 (71)
T ss_dssp SCCBCSSSSSBCSSEEEE--TTT-EEEEHHHHHHCTTCS------SBCSSSCCB
T ss_pred CCCCCccCCcccCCCEEc--cCC-CHHHHHHHHHHHHCC------CcCcCcCch
Confidence 346788888665443332 699 889999999998542 589999874
No 30
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=89.80 E-value=0.11 Score=44.03 Aligned_cols=52 Identities=19% Similarity=0.472 Sum_probs=35.4
Q ss_pred CCcccccccCCCCceEecCcCCCCcccHhHHhhhCCCCChhhhhccCCCCCCccc
Q 002333 201 RIKCHQCMKSERKYVVPCGKCRTKVYCIQCIKQWYPKMSELDVAEICPFCRRNCN 255 (935)
Q Consensus 201 ~~~CHQCrqk~~~~~v~C~~C~r~~FC~~CL~~rY~e~~~edv~~~CP~CRg~CN 255 (935)
...|--|...-...++ ..|+ ..||..||..|+...........||.||....
T Consensus 19 ~~~C~IC~~~~~~p~~--~~Cg-H~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~ 70 (85)
T 2ecv_A 19 EVTCPICLELLTQPLS--LDCG-HSFCQACLTANHKKSMLDKGESSCPVCRISYQ 70 (85)
T ss_dssp CCCCTTTCSCCSSCBC--CSSS-CCBCTTHHHHHHHHHHHTTSCCCCTTTCCSSC
T ss_pred CCCCCCCCcccCCcee--CCCC-CHHHHHHHHHHHHHhhcCCCCCcCCCCCCccC
Confidence 4678888876544333 2699 89999999999753111123578999987543
No 31
>2q30_A Uncharacterized protein; double-stranded beta-helix fold, structural genomics, joint for structural genomics, JCSG; HET: MSE; 1.94A {Desulfovibrio desulfuricans subsp}
Probab=89.58 E-value=0.1 Score=45.75 Aligned_cols=36 Identities=19% Similarity=0.356 Sum_probs=28.2
Q ss_pred ceEEEeecCceeEecCCCccccccccccceecccccCc
Q 002333 841 PWTFEQKLGEAVFIPAGCPHQVRNLKSCTKVAVDFVSP 878 (935)
Q Consensus 841 pWtf~Q~lGEAVFIPAGCPHQVRNLkSCIKVAlDFVSP 878 (935)
.=++.=..||+++||||.||+++|...+. .+..++|
T Consensus 73 ~~~~~l~~Gd~~~ip~~~~H~~~~~~~~~--~l~~~~p 108 (110)
T 2q30_A 73 DAVIPAPRGAVLVAPISTPHGVRAVTDMK--VLVTIAP 108 (110)
T ss_dssp GCEEEECTTEEEEEETTSCEEEEESSSEE--EEEEEES
T ss_pred CEEEEECCCCEEEeCCCCcEEEEEcCCcE--EEEEECC
Confidence 35677789999999999999999998753 3444554
No 32
>1vrb_A Putative asparaginyl hydroxylase; 2636534, structural genomi center for structural genomics, JCSG, protein structure INI PSI, oxidoreductase; 2.60A {Bacillus subtilis} SCOP: b.82.2.11
Probab=89.47 E-value=0.17 Score=55.39 Aligned_cols=36 Identities=11% Similarity=0.222 Sum_probs=32.7
Q ss_pred ccceEEEeecCceeEecCCCccccccc--cccceeccc
Q 002333 839 VEPWTFEQKLGEAVFIPAGCPHQVRNL--KSCTKVAVD 874 (935)
Q Consensus 839 VEpWtf~Q~lGEAVFIPAGCPHQVRNL--kSCIKVAlD 874 (935)
..++.++-.+||+.|||+|.+|||+++ ..|+.|.+-
T Consensus 215 ~~~~~~~L~pGD~LyiP~gwwH~v~s~~~~~slsvsi~ 252 (342)
T 1vrb_A 215 PDAEIVNLTPGTMLYLPRGLWHSTKSDQATLALNITFG 252 (342)
T ss_dssp CSSEEEEECTTCEEEECTTCEEEEECSSCEEEEEEEEC
T ss_pred CCceEEEECCCcEEEeCCCccEEEEECCCCceEEEEEC
Confidence 567999999999999999999999999 468888877
No 33
>3h8u_A Uncharacterized conserved protein with double-STR beta-helix domain; YP_001338853.1; HET: 2PE; 1.80A {Klebsiella pneumoniae subsp}
Probab=89.45 E-value=0.16 Score=46.02 Aligned_cols=38 Identities=21% Similarity=0.195 Sum_probs=29.1
Q ss_pred eEEEeecCceeEecCCCccccccccccceecccccCcc
Q 002333 842 WTFEQKLGEAVFIPAGCPHQVRNLKSCTKVAVDFVSPE 879 (935)
Q Consensus 842 Wtf~Q~lGEAVFIPAGCPHQVRNLkSCIKVAlDFVSPE 879 (935)
=++.=..||+|+||+|.||+++|..+---+.+.+++|-
T Consensus 79 ~~~~l~~Gd~~~i~~~~~H~~~n~~~~~~~~l~v~~p~ 116 (125)
T 3h8u_A 79 IVTHLKAGDIAIAKPGQVHGAMNSGPEPFIFVSVVAPG 116 (125)
T ss_dssp CEEEEETTEEEEECTTCCCEEEECSSSCEEEEEEEEST
T ss_pred eEEEeCCCCEEEECCCCEEEeEeCCCCCEEEEEEECCC
Confidence 35556789999999999999999876544555556653
No 34
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=89.43 E-value=0.34 Score=38.22 Aligned_cols=45 Identities=20% Similarity=0.665 Sum_probs=32.1
Q ss_pred CCcccccccCCC--CceEecCcCCCCcccHhHHhhhCCCCChhhhhccCCCCCC
Q 002333 201 RIKCHQCMKSER--KYVVPCGKCRTKVYCIQCIKQWYPKMSELDVAEICPFCRR 252 (935)
Q Consensus 201 ~~~CHQCrqk~~--~~~v~C~~C~r~~FC~~CL~~rY~e~~~edv~~~CP~CRg 252 (935)
...|.-|...-. ...+....|+ ..||..||..|... ...||.||.
T Consensus 5 ~~~C~IC~~~~~~~~~~~~~~~C~-H~f~~~Ci~~w~~~------~~~CP~Cr~ 51 (55)
T 1iym_A 5 GVECAVCLAELEDGEEARFLPRCG-HGFHAECVDMWLGS------HSTCPLCRL 51 (55)
T ss_dssp SCCCTTTCCCCCTTSCCEECSSSC-CEECTTHHHHTTTT------CCSCSSSCC
T ss_pred CCcCccCCccccCCCceEECCCCC-CcccHHHHHHHHHc------CCcCcCCCC
Confidence 456777776532 2244444698 89999999999854 357999986
No 35
>2fc7_A ZZZ3 protein; structure genomics, ZZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.6
Probab=89.27 E-value=0.2 Score=44.84 Aligned_cols=37 Identities=22% Similarity=0.690 Sum_probs=31.3
Q ss_pred CCcccccCccc-cccccccccCcCC----cccchhchHHhhc
Q 002333 328 DERVYCNHCAT-SIIDLHRSCPKCS----YELCLTCCKEICE 364 (935)
Q Consensus 328 DERvyCDnCkT-SI~D~HRSC~~Cs----yDLCL~CC~ELR~ 364 (935)
-..+.||.|.. +|+-.-..|..|. ||||..|....+.
T Consensus 19 H~~~~Cd~C~~~pI~G~RykC~~C~d~~~yDLC~~C~~~g~~ 60 (82)
T 2fc7_A 19 HVGFKCDNCGIEPIQGVRWHCQDCPPEMSLDFCDSCSDCLHE 60 (82)
T ss_dssp ESSCCCSSSCCSSEESCEEEESSSCSSSCCEEEGGGTTCCCC
T ss_pred eCcCCCCCCCCCcceeceEECCcCCCCcceecHHHHHhCccc
Confidence 34678999996 8999999999996 9999999986553
No 36
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=89.25 E-value=0.16 Score=45.71 Aligned_cols=48 Identities=33% Similarity=0.900 Sum_probs=37.2
Q ss_pred CCCcccccccCCCCceEecCcCCCCcccHhHHhhhCCCCChhhhhccCCCCCCcc
Q 002333 200 ERIKCHQCMKSERKYVVPCGKCRTKVYCIQCIKQWYPKMSELDVAEICPFCRRNC 254 (935)
Q Consensus 200 ~~~~CHQCrqk~~~~~v~C~~C~r~~FC~~CL~~rY~e~~~edv~~~CP~CRg~C 254 (935)
+...|.-|...-. .-+.|..|+ ..||..||..|+... ...||.||..-
T Consensus 21 ~~~~C~IC~~~~~-~p~~~~~Cg-H~FC~~Ci~~~~~~~-----~~~CP~Cr~~~ 68 (100)
T 3lrq_A 21 EVFRCFICMEKLR-DARLCPHCS-KLCCFSCIRRWLTEQ-----RAQCPHCRAPL 68 (100)
T ss_dssp HHTBCTTTCSBCS-SEEECTTTC-CEEEHHHHHHHHHHT-----CSBCTTTCCBC
T ss_pred CCCCCccCCcccc-CccccCCCC-ChhhHHHHHHHHHHC-----cCCCCCCCCcC
Confidence 3478999987654 456778999 999999999998532 26899999854
No 37
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=89.20 E-value=0.32 Score=41.04 Aligned_cols=46 Identities=24% Similarity=0.718 Sum_probs=33.7
Q ss_pred CCCcccccccCCC-CceEecCcCCCCcccHhHHhhhCCCCChhhhhccCCCCCC
Q 002333 200 ERIKCHQCMKSER-KYVVPCGKCRTKVYCIQCIKQWYPKMSELDVAEICPFCRR 252 (935)
Q Consensus 200 ~~~~CHQCrqk~~-~~~v~C~~C~r~~FC~~CL~~rY~e~~~edv~~~CP~CRg 252 (935)
+...|.-|...-. ...+....|+ ..||..||.+|... ...||.||.
T Consensus 22 ~~~~C~IC~~~~~~~~~~~~l~C~-H~fh~~Ci~~w~~~------~~~CP~Cr~ 68 (75)
T 1x4j_A 22 EQTLCVVCMCDFESRQLLRVLPCN-HEFHAKCVDKWLKA------NRTCPICRA 68 (75)
T ss_dssp SCCEETTTTEECCBTCEEEEETTT-EEEETTHHHHHHHH------CSSCTTTCC
T ss_pred CCCCCeECCcccCCCCeEEEECCC-CHhHHHHHHHHHHc------CCcCcCcCC
Confidence 4467999986532 3345555698 88999999999742 358999986
No 38
>1v70_A Probable antibiotics synthesis protein; structural genomics, thermus thermophilus HB8, riken structu genomics/proteomics initiative, RSGI; 1.30A {Thermus thermophilus} SCOP: b.82.1.9 PDB: 2dct_A
Probab=89.16 E-value=0.16 Score=43.48 Aligned_cols=37 Identities=32% Similarity=0.430 Sum_probs=26.4
Q ss_pred eEEEeecCceeEecCCCccccccccccceecccccCc
Q 002333 842 WTFEQKLGEAVFIPAGCPHQVRNLKSCTKVAVDFVSP 878 (935)
Q Consensus 842 Wtf~Q~lGEAVFIPAGCPHQVRNLkSCIKVAlDFVSP 878 (935)
=++.=..||+++||+|.||+++|...---+.+-+++|
T Consensus 67 ~~~~l~~Gd~~~ip~~~~H~~~~~~~~~~~~~~v~~p 103 (105)
T 1v70_A 67 EEALLAPGMAAFAPAGAPHGVRNESASPALLLVVTAP 103 (105)
T ss_dssp EEEEECTTCEEEECTTSCEEEECCSSSCEEEEEEEES
T ss_pred EEEEeCCCCEEEECCCCcEEeEeCCCCCEEEEEEeCC
Confidence 3566679999999999999999986432233344444
No 39
>4e2g_A Cupin 2 conserved barrel domain protein; MCSG, PSI-biology, structural genomics, GEBA, midwest center structural genomics; HET: MSE; 1.86A {Sphaerobacter thermophilus}
Probab=88.76 E-value=0.32 Score=43.97 Aligned_cols=59 Identities=27% Similarity=0.359 Sum_probs=40.2
Q ss_pred ccCCcccCccccCHHHHHHHHHHhCccceEEEeecCceeEecCCCccccccccccceecccccCcc
Q 002333 814 VIHPIHDQCFYLSSEHKKKLKEEFGVEPWTFEQKLGEAVFIPAGCPHQVRNLKSCTKVAVDFVSPE 879 (935)
Q Consensus 814 v~dPIHDQ~fYLt~ehk~rLkEEyGVEpWtf~Q~lGEAVFIPAGCPHQVRNLkSCIKVAlDFVSPE 879 (935)
..|| ++|-+|+-.-.- ++-|..-++.=..||+|+||+|.||.++|... --+.+.+++|-
T Consensus 57 H~H~-~~e~~~vl~G~~-----~~~~~~~~~~l~~Gd~~~ip~~~~H~~~~~~~-~~~~l~v~~p~ 115 (126)
T 4e2g_A 57 HEHP-HEQAGVMLEGTL-----ELTIGEETRVLRPGMAYTIPGGVRHRARTFED-GCLVLDIFSPP 115 (126)
T ss_dssp ECCS-SEEEEEEEEECE-----EEEETTEEEEECTTEEEEECTTCCEEEECCTT-CEEEEEEEESC
T ss_pred ccCC-CceEEEEEEeEE-----EEEECCEEEEeCCCCEEEECCCCcEEeEECCC-CEEEEEEECCC
Confidence 3556 466666544322 23344556777899999999999999999988 33455666664
No 40
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=88.52 E-value=0.21 Score=39.36 Aligned_cols=45 Identities=18% Similarity=0.496 Sum_probs=33.5
Q ss_pred CCcccccccCC--CCceEecCcCCCCcccHhHHhhhCCCCChhhhhccCCCCCC
Q 002333 201 RIKCHQCMKSE--RKYVVPCGKCRTKVYCIQCIKQWYPKMSELDVAEICPFCRR 252 (935)
Q Consensus 201 ~~~CHQCrqk~--~~~~v~C~~C~r~~FC~~CL~~rY~e~~~edv~~~CP~CRg 252 (935)
...|--|...- ....+....|+ ..||..||.+|... ...||.||.
T Consensus 5 ~~~C~IC~~~~~~~~~~~~~~~Cg-H~fc~~Ci~~~~~~------~~~CP~Cr~ 51 (55)
T 2ecm_A 5 SSGCPICLEDIHTSRVVAHVLPCG-HLLHRTCYEEMLKE------GYRCPLCSG 51 (55)
T ss_dssp CCSCTTTCCCCCTTTSCEEECTTS-CEEETTHHHHHHHH------TCCCTTSCC
T ss_pred CCcCcccChhhcCCCcCeEecCCC-CcccHHHHHHHHHc------CCcCCCCCC
Confidence 36788887653 23456667798 89999999999743 278999986
No 41
>2b8m_A Hypothetical protein MJ0764; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 1.70A {Methanocaldococcus jannaschii} SCOP: b.82.1.18
Probab=88.32 E-value=0.17 Score=45.39 Aligned_cols=36 Identities=22% Similarity=0.345 Sum_probs=26.7
Q ss_pred EeecCceeEecCCCcccccccccc--ceecccccCccc
Q 002333 845 EQKLGEAVFIPAGCPHQVRNLKSC--TKVAVDFVSPEN 880 (935)
Q Consensus 845 ~Q~lGEAVFIPAGCPHQVRNLkSC--IKVAlDFVSPEn 880 (935)
.=..||++|||+|.||+++|..+. .-+.+.|-+|+.
T Consensus 69 ~l~~Gd~i~ip~~~~H~~~~~~~~~~~~l~i~~~~~~~ 106 (117)
T 2b8m_A 69 NYKEGNIVYVPFNVKMLIQNINSDILEFFVVKAPHPKK 106 (117)
T ss_dssp EEETTCEEEECTTCEEEEECCSSSEEEEEEEECSCGGG
T ss_pred EeCCCCEEEECCCCcEEeEcCCCCCEEEEEEECCCCCC
Confidence 567899999999999999998653 344444445543
No 42
>2ozj_A Cupin 2, conserved barrel; cupin superfamily protein, struct genomics, joint center for structural genomics, JCSG; HET: MSE; 1.60A {Desulfitobacterium hafniense}
Probab=88.07 E-value=0.18 Score=45.16 Aligned_cols=36 Identities=8% Similarity=0.132 Sum_probs=28.4
Q ss_pred hCccceEEEeecCceeEecCCCccccccccccceec
Q 002333 837 FGVEPWTFEQKLGEAVFIPAGCPHQVRNLKSCTKVA 872 (935)
Q Consensus 837 yGVEpWtf~Q~lGEAVFIPAGCPHQVRNLkSCIKVA 872 (935)
+.|..=++.=..||+++||||.||.++|...|.=+.
T Consensus 71 ~~i~~~~~~l~~Gd~i~i~~~~~H~~~~~~~~~~~~ 106 (114)
T 2ozj_A 71 ITFDDQKIDLVPEDVLMVPAHKIHAIAGKGRFKMLQ 106 (114)
T ss_dssp EEETTEEEEECTTCEEEECTTCCBEEEEEEEEEEEE
T ss_pred EEECCEEEEecCCCEEEECCCCcEEEEeCCCcEEEE
Confidence 445556777889999999999999999986654433
No 43
>1juh_A Quercetin 2,3-dioxygenase; cupin, glycoprotein, beta sandwich, oxidoreduct; HET: NAG BMA MAN; 1.60A {Aspergillus japonicus} SCOP: b.82.1.5 PDB: 1gqh_A* 1h1i_A* 1h1m_A* 1gqg_A*
Probab=88.07 E-value=0.19 Score=54.83 Aligned_cols=40 Identities=20% Similarity=0.270 Sum_probs=34.1
Q ss_pred EEEeecCceeEecCCCccccccccccceecccccCc-cchHH
Q 002333 843 TFEQKLGEAVFIPAGCPHQVRNLKSCTKVAVDFVSP-ENVDE 883 (935)
Q Consensus 843 tf~Q~lGEAVFIPAGCPHQVRNLkSCIKVAlDFVSP-EnV~e 883 (935)
++.=+.||+||||||.||+++|.... +..+=|.+| ..++.
T Consensus 292 ~~~l~~Gd~~~iPag~~h~~~~~~~~-~~~l~~~~g~~g~~~ 332 (350)
T 1juh_A 292 ATELGSGDVAFIPGGVEFKYYSEAYF-SKVLFVSSGSDGLDQ 332 (350)
T ss_dssp CEEECTTCEEEECTTCCEEEEESSSS-EEEEEEEESSSSHHH
T ss_pred EEEeCCCCEEEECCCCCEEEEecCCe-EEEEEEecCccchhh
Confidence 45567899999999999999998776 888888888 77766
No 44
>1tot_A CREB-binding protein; zinc binding, CBP, TAZ2, transferase; NMR {Mus musculus} SCOP: g.44.1.6
Probab=87.92 E-value=0.15 Score=41.90 Aligned_cols=33 Identities=27% Similarity=0.863 Sum_probs=28.4
Q ss_pred cccccCccccccccccccCcC-CcccchhchHHhh
Q 002333 330 RVYCNHCATSIIDLHRSCPKC-SYELCLTCCKEIC 363 (935)
Q Consensus 330 RvyCDnCkTSI~D~HRSC~~C-syDLCL~CC~ELR 363 (935)
.+.||+|...| -.-..|..| .||||..|...-.
T Consensus 6 ~~~Cd~C~~~i-g~R~~C~~C~dyDLC~~C~~~~~ 39 (52)
T 1tot_A 6 VYTCNECKHHV-ETRWHCTVCEDYDLCINCYNTKS 39 (52)
T ss_dssp CEEETTTTEEE-SSEEEESSSSSCEECHHHHHHHC
T ss_pred EEECCCCCCCC-cceEEcCCCCCchhHHHHHhCCC
Confidence 47899999996 677889999 6999999998754
No 45
>2fqp_A Hypothetical protein BP2299; double-stranded beta-helix fold, structural genomics, joint for structural genomics, JCSG; HET: 1PE; 1.80A {Bordetella pertussis tohama I}
Probab=87.92 E-value=0.24 Score=43.55 Aligned_cols=25 Identities=28% Similarity=0.286 Sum_probs=21.5
Q ss_pred EEEeecCceeEecCCCccccccccc
Q 002333 843 TFEQKLGEAVFIPAGCPHQVRNLKS 867 (935)
Q Consensus 843 tf~Q~lGEAVFIPAGCPHQVRNLkS 867 (935)
++.=..||+|+||||.||+++|.-+
T Consensus 60 ~~~l~~Gd~~~~p~~~~H~~~N~g~ 84 (97)
T 2fqp_A 60 TSQLTRGVSYTRPEGVEHNVINPSD 84 (97)
T ss_dssp EEEECTTCCEEECTTCEEEEECCSS
T ss_pred EEEEcCCCEEEeCCCCcccCEeCCC
Confidence 4555779999999999999999864
No 46
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=87.64 E-value=0.23 Score=40.96 Aligned_cols=45 Identities=18% Similarity=0.538 Sum_probs=32.4
Q ss_pred CCcccccccCCCCceEecCcCCCCcccHhHHhhhCCCCChhhhhccCCCCCCc
Q 002333 201 RIKCHQCMKSERKYVVPCGKCRTKVYCIQCIKQWYPKMSELDVAEICPFCRRN 253 (935)
Q Consensus 201 ~~~CHQCrqk~~~~~v~C~~C~r~~FC~~CL~~rY~e~~~edv~~~CP~CRg~ 253 (935)
...|--|...-...++ ..|+ ..||..||..|.. .....||.||..
T Consensus 15 ~~~C~IC~~~~~~p~~--~~Cg-H~fC~~Ci~~~~~-----~~~~~CP~Cr~~ 59 (66)
T 2ecy_A 15 KYKCEKCHLVLCSPKQ--TECG-HRFCESCMAALLS-----SSSPKCTACQES 59 (66)
T ss_dssp CEECTTTCCEESSCCC--CSSS-CCCCHHHHHHHHT-----TSSCCCTTTCCC
T ss_pred CCCCCCCChHhcCeeE--CCCC-CHHHHHHHHHHHH-----hCcCCCCCCCcC
Confidence 4678888755443333 4799 8999999999985 224579999864
No 47
>2xlg_A SLL1785 protein, CUCA; metal binding protein, cupin; 1.80A {Synechocystis SP} PDB: 2xl7_A 2xl9_A 2xlf_A* 2xla_A
Probab=87.62 E-value=0.33 Score=50.82 Aligned_cols=76 Identities=13% Similarity=0.153 Sum_probs=52.5
Q ss_pred ccCCcccCccccCHHHHHHHHHHh--------Cccce----------EEEeecCceeEecCCCccccccccccc-eeccc
Q 002333 814 VIHPIHDQCFYLSSEHKKKLKEEF--------GVEPW----------TFEQKLGEAVFIPAGCPHQVRNLKSCT-KVAVD 874 (935)
Q Consensus 814 v~dPIHDQ~fYLt~ehk~rLkEEy--------GVEpW----------tf~Q~lGEAVFIPAGCPHQVRNLkSCI-KVAlD 874 (935)
..||-.+..||+-.-.-. + .. |-+|| ++.=..||.||||+|+||..+|.-.-- ++.+=
T Consensus 59 H~H~~~~E~~yVLeG~~~-~--~v~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GD~i~iP~g~~H~~~N~~~~~~~~~l~ 135 (239)
T 2xlg_A 59 HIHYFINEWFWTPEGGIE-L--FHSTKQYPNMDELPVVGGAGRGDLYSIQSEPKQLIYSPNHYMHGFVNPTDKTLPIVFV 135 (239)
T ss_dssp EEESSEEEEEEETTCCCE-E--EEEEEECCCTTSCCSTTTTCCEEEEEEECCTTEEEEECTTEEEEEECCSSSCEEEEEE
T ss_pred eECCCccEEEEEEEeEEE-E--EEEecccccCCCcccccccccCceeEEEECCCCEEEECCCCCEEEEeCCCCCEEEEEE
Confidence 456666677776544221 1 12 44566 788889999999999999999976532 22133
Q ss_pred cc----------CccchHHHHHHHHHhh
Q 002333 875 FV----------SPENVDECLRLTKEFR 892 (935)
Q Consensus 875 FV----------SPEnV~eC~rLteEfR 892 (935)
++ +|..+.++++...+..
T Consensus 136 ~~~~~~~~~~~~~p~~~e~~f~~l~~~~ 163 (239)
T 2xlg_A 136 WMRNEVAPDFPYHDGGMREYFQAVGPRI 163 (239)
T ss_dssp EEECSSCTTCSCTTCSHHHHHHHHSCBC
T ss_pred EEecccChhhccCcchHHHHHHHhhhhc
Confidence 34 8888999998887654
No 48
>3d82_A Cupin 2, conserved barrel domain protein; structural genomics, joint center for structural genomics; 2.05A {Shewanella frigidimarina ncimb 400}
Probab=87.55 E-value=0.26 Score=42.50 Aligned_cols=28 Identities=25% Similarity=0.458 Sum_probs=23.1
Q ss_pred EEEeecCceeEecCCCccccccccccce
Q 002333 843 TFEQKLGEAVFIPAGCPHQVRNLKSCTK 870 (935)
Q Consensus 843 tf~Q~lGEAVFIPAGCPHQVRNLkSCIK 870 (935)
++.=..||+|+||+|.+|+++|...|.=
T Consensus 69 ~~~l~~Gd~~~ip~~~~H~~~~~~~~~~ 96 (102)
T 3d82_A 69 NITLQAGEMYVIPKGVEHKPMAKEECKI 96 (102)
T ss_dssp EEEEETTEEEEECTTCCBEEEEEEEEEE
T ss_pred EEEEcCCCEEEECCCCeEeeEcCCCCEE
Confidence 4555789999999999999999865543
No 49
>2dip_A Zinc finger SWIM domain-containing protein 2; ZZ domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.44.1.6
Probab=87.42 E-value=0.2 Score=46.30 Aligned_cols=37 Identities=30% Similarity=0.814 Sum_probs=31.2
Q ss_pred CCCcccccCccc-cccccccccCcC-CcccchhchHHhh
Q 002333 327 NDERVYCNHCAT-SIIDLHRSCPKC-SYELCLTCCKEIC 363 (935)
Q Consensus 327 ~DERvyCDnCkT-SI~D~HRSC~~C-syDLCL~CC~ELR 363 (935)
.-..+.||.|.. +|.-+-..|..| .||||..|...-+
T Consensus 28 ~H~gv~Cd~C~~~pI~G~RykC~~C~d~DLC~~C~~~~~ 66 (98)
T 2dip_A 28 KHLGIPCNNCKQFPIEGKCYKCTECIEYHLCQECFDSYC 66 (98)
T ss_dssp SCCCCCCSSSCCSSCCSCEEEESSSSSCEEEHHHHHTTS
T ss_pred ccCCCCCcCCCCCCcccCeEECCCCCCccHHHHHHccCC
Confidence 334589999996 799999999999 8999999987653
No 50
>2e5r_A Dystrobrevin alpha; ZZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=87.23 E-value=0.23 Score=42.26 Aligned_cols=34 Identities=29% Similarity=0.798 Sum_probs=30.2
Q ss_pred ccccCccc-cccccccccCcC-CcccchhchHHhhc
Q 002333 331 VYCNHCAT-SIIDLHRSCPKC-SYELCLTCCKEICE 364 (935)
Q Consensus 331 vyCDnCkT-SI~D~HRSC~~C-syDLCL~CC~ELR~ 364 (935)
+.||.|.. +|.-+-..|..| .||||..|...-+.
T Consensus 12 ~~Cd~C~~~pi~G~RykC~~C~d~DLC~~C~~~g~~ 47 (63)
T 2e5r_A 12 VECSYCHSESMMGFRYRCQQCHNYQLCQDCFWRGHA 47 (63)
T ss_dssp SCCSSSCCCSSCSCEEEESSCSSCEECHHHHHHCCC
T ss_pred CCCcCCCCcceecceEEecCCCCchhHHHHHhCCCc
Confidence 88999996 599999999999 79999999987554
No 51
>3ibm_A Cupin 2, conserved barrel domain protein; cupin 2 family, metal-binding site, beta barrel, PSI-2, NYSG structural genomics; 2.00A {Halorhodospira halophila SL1}
Probab=87.01 E-value=0.21 Score=48.86 Aligned_cols=60 Identities=15% Similarity=0.117 Sum_probs=39.7
Q ss_pred ccCCcccCccccCHHHHHHHHHHhCccceEEEeecCceeEecCCCcccccccc-ccceecccccCcc
Q 002333 814 VIHPIHDQCFYLSSEHKKKLKEEFGVEPWTFEQKLGEAVFIPAGCPHQVRNLK-SCTKVAVDFVSPE 879 (935)
Q Consensus 814 v~dPIHDQ~fYLt~ehk~rLkEEyGVEpWtf~Q~lGEAVFIPAGCPHQVRNLk-SCIKVAlDFVSPE 879 (935)
..|+ ++|-+|+-.-.- ++-|..=++.=..||+||||+|.||+++|.. +---+.+-+++|+
T Consensus 72 H~H~-~~E~~~Vl~G~~-----~~~i~~~~~~l~~Gd~i~ip~~~~H~~~n~~~~~~~~~l~i~~~~ 132 (167)
T 3ibm_A 72 ERHE-HTHVVMVVRGHA-----EVVLDDRVEPLTPLDCVYIAPHAWHQIHATGANEPLGFLCIVDSD 132 (167)
T ss_dssp BBCS-SCEEEEEEESEE-----EEEETTEEEEECTTCEEEECTTCCEEEEEESSSCCEEEEEEEESS
T ss_pred ccCC-CcEEEEEEeCEE-----EEEECCEEEEECCCCEEEECCCCcEEEEeCCCCCCEEEEEEEeCC
Confidence 4566 677676644332 2344555777789999999999999999987 4322333445554
No 52
>2gu9_A Tetracenomycin polyketide synthesis protein; X-RAY diffraction, cupin, immune system; 1.40A {Xanthomonas campestris} PDB: 2ilb_A 3h50_A
Probab=87.01 E-value=0.32 Score=42.47 Aligned_cols=40 Identities=25% Similarity=0.375 Sum_probs=29.0
Q ss_pred cceEEEeecCceeEecCCCccccccccccceecccccCcc
Q 002333 840 EPWTFEQKLGEAVFIPAGCPHQVRNLKSCTKVAVDFVSPE 879 (935)
Q Consensus 840 EpWtf~Q~lGEAVFIPAGCPHQVRNLkSCIKVAlDFVSPE 879 (935)
..=++.=..||+++||+|.||+.+|..+---+.+-+++|.
T Consensus 60 ~~~~~~l~~Gd~~~i~~~~~H~~~~~~~~~~~~~~v~~~~ 99 (113)
T 2gu9_A 60 DGHTQALQAGSLIAIERGQAHEIRNTGDTPLKTVNFYHPP 99 (113)
T ss_dssp TTEEEEECTTEEEEECTTCCEEEECCSSSCEEEEEEEESC
T ss_pred CCEEEEeCCCCEEEECCCCcEEeEcCCCCCEEEEEEECCC
Confidence 3445677899999999999999999865333344445554
No 53
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=87.00 E-value=0.72 Score=40.91 Aligned_cols=45 Identities=22% Similarity=0.617 Sum_probs=33.7
Q ss_pred CCcccccccCCCCceEecCcCCCCcccHhHHhhhCCCCChhhhhccCCCCCCc
Q 002333 201 RIKCHQCMKSERKYVVPCGKCRTKVYCIQCIKQWYPKMSELDVAEICPFCRRN 253 (935)
Q Consensus 201 ~~~CHQCrqk~~~~~v~C~~C~r~~FC~~CL~~rY~e~~~edv~~~CP~CRg~ 253 (935)
...|--|...-... +....|+ ..||..||..|... ...||.||..
T Consensus 22 ~~~C~IC~~~~~~p-~~~~~Cg-H~fC~~Ci~~~~~~------~~~CP~Cr~~ 66 (99)
T 2y43_A 22 LLRCGICFEYFNIA-MIIPQCS-HNYCSLCIRKFLSY------KTQCPTCCVT 66 (99)
T ss_dssp HTBCTTTCSBCSSE-EECTTTC-CEEEHHHHHHHHTT------CCBCTTTCCB
T ss_pred CCCcccCChhhCCc-CEECCCC-CHhhHHHHHHHHHC------CCCCCCCCCc
Confidence 36788898665443 3335799 99999999999863 2589999874
No 54
>1o5u_A Novel thermotoga maritima enzyme TM1112; cupin, structural genomics center for structural genomics, JCSG, protein structure INI PSI; 1.83A {Thermotoga maritima} SCOP: b.82.1.8 PDB: 1lkn_A 2k9z_A
Probab=86.86 E-value=0.21 Score=45.45 Aligned_cols=31 Identities=19% Similarity=0.236 Sum_probs=25.9
Q ss_pred ceEEEeecCceeEecCCCcccccccccccee
Q 002333 841 PWTFEQKLGEAVFIPAGCPHQVRNLKSCTKV 871 (935)
Q Consensus 841 pWtf~Q~lGEAVFIPAGCPHQVRNLkSCIKV 871 (935)
.-++.=..||+|+||+|.||+.+|....-|+
T Consensus 67 g~~~~l~~GD~i~ip~g~~H~~~n~~~~~~~ 97 (101)
T 1o5u_A 67 GKKYVIEKGDLVTFPKGLRCRWKVLEPVRKH 97 (101)
T ss_dssp CCEEEEETTCEEEECTTCEEEEEEEEEEEEE
T ss_pred CCEEEECCCCEEEECCCCcEEEEeCCCeeEE
Confidence 4567788999999999999999998765543
No 55
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=86.84 E-value=0.53 Score=37.28 Aligned_cols=44 Identities=25% Similarity=0.835 Sum_probs=32.1
Q ss_pred CCcccccccCCCCceEecCcCCCCcccHhHHhhhCCCCChhhhhccCCCC
Q 002333 201 RIKCHQCMKSERKYVVPCGKCRTKVYCIQCIKQWYPKMSELDVAEICPFC 250 (935)
Q Consensus 201 ~~~CHQCrqk~~~~~v~C~~C~r~~FC~~CL~~rY~e~~~edv~~~CP~C 250 (935)
...|--|...-...++ ..|+ ..||..||..|+... .....||.|
T Consensus 15 ~~~C~IC~~~~~~p~~--~~Cg-H~fC~~Ci~~~~~~~---~~~~~CP~C 58 (58)
T 2ecj_A 15 EASCSVCLEYLKEPVI--IECG-HNFCKACITRWWEDL---ERDFPCPVC 58 (58)
T ss_dssp CCBCSSSCCBCSSCCC--CSSC-CCCCHHHHHHHTTSS---CCSCCCSCC
T ss_pred CCCCccCCcccCccEe--CCCC-CccCHHHHHHHHHhc---CCCCCCCCC
Confidence 4678888876544333 4699 889999999997642 235689998
No 56
>3kgz_A Cupin 2 conserved barrel domain protein; metalloprotein, structural genomics, PSI-2, protein structur initiative; 1.85A {Rhodopseudomonas palustris}
Probab=86.68 E-value=0.36 Score=46.99 Aligned_cols=41 Identities=24% Similarity=0.173 Sum_probs=29.5
Q ss_pred ccceEEEeecCceeEecCCCccccccccccceecccccCcc
Q 002333 839 VEPWTFEQKLGEAVFIPAGCPHQVRNLKSCTKVAVDFVSPE 879 (935)
Q Consensus 839 VEpWtf~Q~lGEAVFIPAGCPHQVRNLkSCIKVAlDFVSPE 879 (935)
|..=++.=..||+||||+|++|+++|..+---+-+-+++|+
T Consensus 79 v~g~~~~l~~Gd~i~ip~~~~H~~~n~g~~~~~~l~i~~~~ 119 (156)
T 3kgz_A 79 VGETISDVAQGDLVFIPPMTWHQFRANRGDCLGFLCVVNAA 119 (156)
T ss_dssp ETTEEEEEETTCEEEECTTCCEEEECCSSSCEEEEEEEESS
T ss_pred ECCEEEEeCCCCEEEECCCCcEEeEeCCCCCEEEEEEEeCC
Confidence 44446667889999999999999999876433334444444
No 57
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=86.17 E-value=0.35 Score=39.98 Aligned_cols=46 Identities=26% Similarity=0.610 Sum_probs=32.4
Q ss_pred CCCcccccccCC-CCceEecCcCCCCcccHhHHhhhCCCCChhhhhccCCCCCC
Q 002333 200 ERIKCHQCMKSE-RKYVVPCGKCRTKVYCIQCIKQWYPKMSELDVAEICPFCRR 252 (935)
Q Consensus 200 ~~~~CHQCrqk~-~~~~v~C~~C~r~~FC~~CL~~rY~e~~~edv~~~CP~CRg 252 (935)
....|.-|...- ....+....|+ ..||..||..|... ...||.||.
T Consensus 13 ~~~~C~IC~~~~~~~~~~~~~~C~-H~fc~~Ci~~~~~~------~~~CP~Cr~ 59 (69)
T 2kiz_A 13 TEEKCTICLSILEEGEDVRRLPCM-HLFHQVCVDQWLIT------NKKCPICRV 59 (69)
T ss_dssp CCCSBTTTTBCCCSSSCEEECTTS-CEEEHHHHHHHHHH------CSBCTTTCS
T ss_pred CCCCCeeCCccccCCCcEEEeCCC-CHHHHHHHHHHHHc------CCCCcCcCc
Confidence 346788886543 22334555798 88999999999743 346999986
No 58
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=85.85 E-value=0.33 Score=40.95 Aligned_cols=52 Identities=19% Similarity=0.475 Sum_probs=35.8
Q ss_pred CCCcccccccCCCCceEecCcCCCCcccHhHHhhhCCCCC-hhhhhccCCCCCCcc
Q 002333 200 ERIKCHQCMKSERKYVVPCGKCRTKVYCIQCIKQWYPKMS-ELDVAEICPFCRRNC 254 (935)
Q Consensus 200 ~~~~CHQCrqk~~~~~v~C~~C~r~~FC~~CL~~rY~e~~-~edv~~~CP~CRg~C 254 (935)
+...|--|...-...++ ..|+ ..||..||..|+.... .......||.||...
T Consensus 11 ~~~~C~IC~~~~~~p~~--l~Cg-H~fC~~Ci~~~~~~~~~~~~~~~~CP~Cr~~~ 63 (79)
T 2egp_A 11 EEVTCPICLELLTEPLS--LDCG-HSLCRACITVSNKEAVTSMGGKSSCPVCGISY 63 (79)
T ss_dssp CCCEETTTTEECSSCCC--CSSS-CCCCHHHHSCCCCCCSSSCCCCCCCSSSCCCC
T ss_pred cCCCCcCCCcccCCeeE--CCCC-CHHHHHHHHHHHHhcccCCCCCCcCCCCCCcC
Confidence 34778888766544333 3699 8999999999986521 112357899998754
No 59
>3h7j_A Bacilysin biosynthesis protein BACB; YWFC, bacilysin synthesis, anticapsin synthesis, BI-Cu double stranded beta helix, antibiotic biosynthesis; HET: PPY; 1.87A {Bacillus subtilis} PDB: 3h7y_A* 3h9a_A*
Probab=85.52 E-value=0.28 Score=50.43 Aligned_cols=60 Identities=22% Similarity=0.180 Sum_probs=40.9
Q ss_pred ccCCcccCccccCHHHHHHHHHHhCccceEEEeecCceeEecCCCccccccccccceecccccCcc
Q 002333 814 VIHPIHDQCFYLSSEHKKKLKEEFGVEPWTFEQKLGEAVFIPAGCPHQVRNLKSCTKVAVDFVSPE 879 (935)
Q Consensus 814 v~dPIHDQ~fYLt~ehk~rLkEEyGVEpWtf~Q~lGEAVFIPAGCPHQVRNLkSCIKVAlDFVSPE 879 (935)
..|| +.|-+|+..-.- ++-|..=++.=..||+|+||+|+||+++|.-.---+.++.++|-
T Consensus 162 H~H~-~~e~~~Vl~G~~-----~~~i~~~~~~l~~Gd~i~ip~~~~H~~~n~~~~~~~~l~v~~p~ 221 (243)
T 3h7j_A 162 HKHR-NEQIGICIGGGY-----DMTVEGCTVEMKFGTAYFCEPREDHGAINRSEKESKSINIFFPP 221 (243)
T ss_dssp ECCS-SEEEEEECSSCE-----EEEETTEEEEECTTCEEEECTTCCEEEEECSSSCEEEEEEEESC
T ss_pred EeCC-CcEEEEEEECEE-----EEEECCEEEEECCCCEEEECCCCcEEeEeCCCCCEEEEEEEcCC
Confidence 3555 566667654422 23444446667899999999999999999866444556666664
No 60
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=85.33 E-value=0.48 Score=41.82 Aligned_cols=48 Identities=23% Similarity=0.572 Sum_probs=34.0
Q ss_pred CCCCcccccccCC-CCceEecCcCCCCcccHhHHhhhCCCCChhhhhccCCCCCCc
Q 002333 199 LERIKCHQCMKSE-RKYVVPCGKCRTKVYCIQCIKQWYPKMSELDVAEICPFCRRN 253 (935)
Q Consensus 199 g~~~~CHQCrqk~-~~~~v~C~~C~r~~FC~~CL~~rY~e~~~edv~~~CP~CRg~ 253 (935)
+....|.-|...- .+..+....|+ ..||..||..|... ...||.||..
T Consensus 38 ~~~~~C~IC~~~~~~~~~~~~l~C~-H~Fh~~Ci~~wl~~------~~~CP~Cr~~ 86 (91)
T 2l0b_A 38 GQEMCCPICCSEYVKGDVATELPCH-HYFHKPCVSIWLQK------SGTCPVCRCM 86 (91)
T ss_dssp SSCSEETTTTEECCTTCEEEEETTT-EEEEHHHHHHHHTT------TCBCTTTCCB
T ss_pred CCCCCCcccChhhcCCCcEEecCCC-ChHHHHHHHHHHHc------CCcCcCcCcc
Confidence 3457899997543 22334444599 89999999999853 2489999863
No 61
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=85.04 E-value=0.38 Score=40.34 Aligned_cols=45 Identities=22% Similarity=0.539 Sum_probs=33.5
Q ss_pred CCcccccccCCCCceEecCcCCCCcccHhHHhhhCCCCChhhhhccCCCCCCc
Q 002333 201 RIKCHQCMKSERKYVVPCGKCRTKVYCIQCIKQWYPKMSELDVAEICPFCRRN 253 (935)
Q Consensus 201 ~~~CHQCrqk~~~~~v~C~~C~r~~FC~~CL~~rY~e~~~edv~~~CP~CRg~ 253 (935)
...|--|...-.. .+.-..|+ ..||..||..|... ...||.||..
T Consensus 15 ~~~C~IC~~~~~~-p~~~~~Cg-H~fC~~Ci~~~~~~------~~~CP~Cr~~ 59 (72)
T 2djb_A 15 YILCSICKGYLID-ATTITECL-HTFCKSCIVRHFYY------SNRCPKCNIV 59 (72)
T ss_dssp GGSCTTTSSCCSS-CEECSSSC-CEECHHHHHHHHHH------CSSCTTTCCC
T ss_pred CCCCCCCChHHHC-cCEECCCC-CHHHHHHHHHHHHc------CCcCCCcCcc
Confidence 3678888765443 33445799 89999999999842 4689999874
No 62
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=84.81 E-value=0.75 Score=38.86 Aligned_cols=47 Identities=23% Similarity=0.661 Sum_probs=32.2
Q ss_pred CCCcccccccCCC-CceEecCcCCCCcccHhHHhhhCCCCChhhhhccCCCCCCc
Q 002333 200 ERIKCHQCMKSER-KYVVPCGKCRTKVYCIQCIKQWYPKMSELDVAEICPFCRRN 253 (935)
Q Consensus 200 ~~~~CHQCrqk~~-~~~v~C~~C~r~~FC~~CL~~rY~e~~~edv~~~CP~CRg~ 253 (935)
....|.-|...-. ...+.-..|+ ..||..||..|... ...||.||..
T Consensus 14 ~~~~C~IC~~~~~~~~~~~~~~C~-H~fc~~Ci~~~~~~------~~~CP~Cr~~ 61 (78)
T 2ect_A 14 SGLECPVCKEDYALGESVRQLPCN-HLFHDSCIVPWLEQ------HDSCPVCRKS 61 (78)
T ss_dssp SSCCCTTTTSCCCTTSCEEECTTS-CEEETTTTHHHHTT------TCSCTTTCCC
T ss_pred CCCCCeeCCccccCCCCEEEeCCC-CeecHHHHHHHHHc------CCcCcCcCCc
Confidence 3467888875532 1223333588 88999999999853 2589999874
No 63
>2ozi_A Hypothetical protein RPA4178; APC6210, putative protein RPA4178, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.15A {Rhodopseudomonas palustris CGA009} PDB: 3lag_A*
Probab=84.67 E-value=0.28 Score=44.33 Aligned_cols=23 Identities=35% Similarity=0.437 Sum_probs=20.3
Q ss_pred EeecCceeEecCCCccccccccc
Q 002333 845 EQKLGEAVFIPAGCPHQVRNLKS 867 (935)
Q Consensus 845 ~Q~lGEAVFIPAGCPHQVRNLkS 867 (935)
.=..||++++|||.+|+++|--+
T Consensus 62 ~l~aGd~~~~p~G~~H~~~N~g~ 84 (98)
T 2ozi_A 62 QLKTGRSYARKAGVQHDVRNEST 84 (98)
T ss_dssp CBCTTCCEEECTTCEEEEEECSS
T ss_pred EECCCCEEEECCCCceeCEECCC
Confidence 34689999999999999999765
No 64
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=84.55 E-value=1.3 Score=39.86 Aligned_cols=46 Identities=20% Similarity=0.551 Sum_probs=34.7
Q ss_pred CCCcccccccCCCCceEecCcCCCCcccHhHHhhhCCCCChhhhhccCCCCCCc
Q 002333 200 ERIKCHQCMKSERKYVVPCGKCRTKVYCIQCIKQWYPKMSELDVAEICPFCRRN 253 (935)
Q Consensus 200 ~~~~CHQCrqk~~~~~v~C~~C~r~~FC~~CL~~rY~e~~~edv~~~CP~CRg~ 253 (935)
+...|--|...-.. -+....|+ ..||..||..|.... ..||.||..
T Consensus 14 ~~~~C~IC~~~~~~-p~~~~~Cg-H~fC~~Ci~~~~~~~------~~CP~Cr~~ 59 (108)
T 2ckl_A 14 PHLMCVLCGGYFID-ATTIIECL-HSFCKTCIVRYLETS------KYCPICDVQ 59 (108)
T ss_dssp GGTBCTTTSSBCSS-EEEETTTC-CEEEHHHHHHHHTSC------SBCTTTCCB
T ss_pred CcCCCccCChHHhC-cCEeCCCC-ChhhHHHHHHHHHhC------CcCcCCCcc
Confidence 34789999765544 34445799 999999999998642 689999874
No 65
>2i45_A Hypothetical protein; neisseria meningitidis cupin domain, structural genomics, PS protein structure initiative; 2.50A {Neisseria meningitidis}
Probab=84.05 E-value=0.49 Score=41.87 Aligned_cols=38 Identities=18% Similarity=0.404 Sum_probs=26.6
Q ss_pred eEEEeecCceeEecCCCccccccccccceecccccCccchH
Q 002333 842 WTFEQKLGEAVFIPAGCPHQVRNLKSCTKVAVDFVSPENVD 882 (935)
Q Consensus 842 Wtf~Q~lGEAVFIPAGCPHQVRNLkSCIKVAlDFVSPEnV~ 882 (935)
=++.=..||+++||+|.||..+|...|.=+ ++.|....
T Consensus 67 ~~~~l~~Gd~~~ip~~~~H~~~~~~~~~~l---~i~~~~~~ 104 (107)
T 2i45_A 67 GSMTIREGEMAVVPKSVSHRPRSENGCSLV---LIELSDPS 104 (107)
T ss_dssp CEEEECTTEEEEECTTCCEEEEEEEEEEEE---EEECC---
T ss_pred cEEEECCCCEEEECCCCcEeeEeCCCeEEE---EEECCCcc
Confidence 366778899999999999999997654322 44554433
No 66
>1weu_A Inhibitor of growth family, member 4; structural genomics, PHD domain, ING1-like protein, DNA binding protein, NPPSFA; NMR {Mus musculus} SCOP: g.50.1.2
Probab=83.99 E-value=1.8 Score=39.52 Aligned_cols=48 Identities=19% Similarity=0.547 Sum_probs=34.3
Q ss_pred CCCCcccccccCCCCceEecCc--CCCCcccHhHHhhhCCCCChh-hhhccCCCCCC
Q 002333 199 LERIKCHQCMKSERKYVVPCGK--CRTKVYCIQCIKQWYPKMSEL-DVAEICPFCRR 252 (935)
Q Consensus 199 g~~~~CHQCrqk~~~~~v~C~~--C~r~~FC~~CL~~rY~e~~~e-dv~~~CP~CRg 252 (935)
.+...| -|++...+.++.|-+ |.+.-|=..|+. ++.. .-.|.||.|+.
T Consensus 34 ~e~~yC-iC~~~~~g~MI~CD~~dC~~~WfH~~CVg-----l~~~p~g~W~Cp~C~~ 84 (91)
T 1weu_A 34 NEPTYC-LCHQVSYGEMIGCDNPDCSIEWFHFACVG-----LTTKPRGKWFCPRCSQ 84 (91)
T ss_dssp CCCBCS-TTCCBCCSCCCCCSCSSCSCCCCCSTTTT-----CSSCCCSSCCCTTTCC
T ss_pred CCCcEE-ECCCCCCCCEeEecCCCCCCCCEecccCC-----cCcCCCCCEECcCccC
Confidence 355888 999987788999999 765556666665 2221 24699999965
No 67
>3ql9_A Transcriptional regulator ATRX; zinc finger, transcription, lysine trimethylation, protein, histone-binding protein, transcription-structural complex; HET: M3L; 0.93A {Homo sapiens} PDB: 3qla_A* 3qlc_A 3qln_A 2jm1_A
Probab=83.94 E-value=0.53 Score=45.48 Aligned_cols=55 Identities=16% Similarity=0.482 Sum_probs=42.0
Q ss_pred hhccCCCCcccccccCCCCceEecCcCCCCcccHhHHhhhCCCCCh-----hhhhccCCCCCC
Q 002333 195 KEKELERIKCHQCMKSERKYVVPCGKCRTKVYCIQCIKQWYPKMSE-----LDVAEICPFCRR 252 (935)
Q Consensus 195 k~~~g~~~~CHQCrqk~~~~~v~C~~C~r~~FC~~CL~~rY~e~~~-----edv~~~CP~CRg 252 (935)
++..|....|..|... +.++-|.+|. ..||..||..-.+.-.. ++-.|.|+.|+-
T Consensus 51 ~d~Dg~~~~C~vC~dG--G~LlcCd~Cp-r~Fc~~Cl~~~lg~~~l~~i~~~~~~W~C~~C~~ 110 (129)
T 3ql9_A 51 RDSDGMDEQCRWCAEG--GNLICCDFCH-NAFCKKCILRNLGRRELSTIMDENNQWYCYICHP 110 (129)
T ss_dssp BCTTSCBSSCTTTCCC--SEEEECSSSS-CEEEHHHHHHHTCHHHHHHHTCTTSCCCCTTTCC
T ss_pred cCCCCCCCcCeecCCC--CeeEecCCCc-hhhhHHHhCCCcchhHHHHhccCCCCeEcCCcCC
Confidence 3456777889999966 6699999999 99999999987653222 234599999954
No 68
>1y9q_A Transcriptional regulator, HTH_3 family; transcriptional regulaator, strucutral genomics, protein structure initiative, PSI; 1.90A {Vibrio cholerae} SCOP: a.35.1.8 b.82.1.15
Probab=83.92 E-value=0.34 Score=47.42 Aligned_cols=43 Identities=14% Similarity=0.060 Sum_probs=33.3
Q ss_pred hCccceEEEeecCceeEecCCCccccccccccceecccccCccc
Q 002333 837 FGVEPWTFEQKLGEAVFIPAGCPHQVRNLKSCTKVAVDFVSPEN 880 (935)
Q Consensus 837 yGVEpWtf~Q~lGEAVFIPAGCPHQVRNLkSCIKVAlDFVSPEn 880 (935)
+.|..=++.=..||+||||+|.||+.+|.-+--- .+-++.|..
T Consensus 139 ~~~~~~~~~l~~GD~i~i~~~~~H~~~n~~~~~~-~l~v~~~~~ 181 (192)
T 1y9q_A 139 VFFDEQWHELQQGEHIRFFSDQPHGYAAVTEKAV-FQNIVAYPR 181 (192)
T ss_dssp EEETTEEEEECTTCEEEEECSSSEEEEESSSCEE-EEEEEECCC
T ss_pred EEECCEEEEeCCCCEEEEcCCCCeEeECCCCCcE-EEEEEecCc
Confidence 4556667788999999999999999999855333 666777654
No 69
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=83.89 E-value=0.78 Score=37.65 Aligned_cols=47 Identities=21% Similarity=0.686 Sum_probs=33.6
Q ss_pred CCCcccccccCCCCceEecCcCCCCcccHhHHhhhCCCCChhhhhccCCCCCCcc
Q 002333 200 ERIKCHQCMKSERKYVVPCGKCRTKVYCIQCIKQWYPKMSELDVAEICPFCRRNC 254 (935)
Q Consensus 200 ~~~~CHQCrqk~~~~~v~C~~C~r~~FC~~CL~~rY~e~~~edv~~~CP~CRg~C 254 (935)
....|.-|...-.. .+....|+ ..||..||.+|.. ....||.||..-
T Consensus 4 ~~~~C~IC~~~~~~-~~~~~~C~-H~fc~~Ci~~~~~------~~~~CP~Cr~~~ 50 (68)
T 1chc_A 4 VAERCPICLEDPSN-YSMALPCL-HAFCYVCITRWIR------QNPTCPLCKVPV 50 (68)
T ss_dssp CCCCCSSCCSCCCS-CEEETTTT-EEESTTHHHHHHH------HSCSTTTTCCCC
T ss_pred CCCCCeeCCccccC-CcEecCCC-CeeHHHHHHHHHh------CcCcCcCCChhh
Confidence 34678888876443 23455799 8899999999973 235899998643
No 70
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=83.53 E-value=0.49 Score=40.07 Aligned_cols=46 Identities=26% Similarity=0.595 Sum_probs=33.1
Q ss_pred CCcccccccCCCCceEecCcCCCCcccHhHHhhhCCCCChhhhhccCCCCCC
Q 002333 201 RIKCHQCMKSERKYVVPCGKCRTKVYCIQCIKQWYPKMSELDVAEICPFCRR 252 (935)
Q Consensus 201 ~~~CHQCrqk~~~~~v~C~~C~r~~FC~~CL~~rY~e~~~edv~~~CP~CRg 252 (935)
...|--|...-...++ -..|+ ..||..||..|.... -...||.||.
T Consensus 15 ~~~C~IC~~~~~~p~~-~~~Cg-H~fC~~Ci~~~~~~~----~~~~CP~Cr~ 60 (74)
T 2yur_A 15 ELLCLICKDIMTDAVV-IPCCG-NSYCDECIRTALLES----DEHTCPTCHQ 60 (74)
T ss_dssp GGSCSSSCCCCTTCEE-CSSSC-CEECTTHHHHHHHHS----SSSCCSSSCC
T ss_pred CCCCcCCChHHhCCeE-cCCCC-CHHHHHHHHHHHHhc----CCCcCCCCCC
Confidence 3678888765554444 33499 999999999998521 1358999988
No 71
>1lr5_A Auxin binding protein 1; beta jellyroll, double stranded beta helix, germin-like PROT protein binding; HET: NAG BMA MAN; 1.90A {Zea mays} SCOP: b.82.1.2 PDB: 1lrh_A*
Probab=83.46 E-value=0.41 Score=45.83 Aligned_cols=25 Identities=28% Similarity=0.237 Sum_probs=23.2
Q ss_pred eEEEeecCceeEecCCCcccccccc
Q 002333 842 WTFEQKLGEAVFIPAGCPHQVRNLK 866 (935)
Q Consensus 842 Wtf~Q~lGEAVFIPAGCPHQVRNLk 866 (935)
-++.=..||+|+||+|.||+++|..
T Consensus 88 ~~~~l~~Gd~i~ip~~~~H~~~n~~ 112 (163)
T 1lr5_A 88 QEIPFFQNTTFSIPVNDPHQVWNSD 112 (163)
T ss_dssp EEEEECTTEEEEECTTCCEEEECCC
T ss_pred EEEEeCCCCEEEECCCCcEEeEeCC
Confidence 7778889999999999999999986
No 72
>2lv9_A Histone-lysine N-methyltransferase MLL5; zinc finger, transcription, protein binding, NESG, northeast structural genomics consortium, SGC; NMR {Homo sapiens}
Probab=83.19 E-value=0.76 Score=41.96 Aligned_cols=48 Identities=21% Similarity=0.524 Sum_probs=33.9
Q ss_pred CCCCcccccccCC-CCceEecCcCCCCcccHhHHhhhCCCCChhhhhccCCCCC
Q 002333 199 LERIKCHQCMKSE-RKYVVPCGKCRTKVYCIQCIKQWYPKMSELDVAEICPFCR 251 (935)
Q Consensus 199 g~~~~CHQCrqk~-~~~~v~C~~C~r~~FC~~CL~~rY~e~~~edv~~~CP~CR 251 (935)
.+...| .|++.. .+.++.|-.|. .-|=..|+.--....+ -.|.||.|+
T Consensus 26 ~d~vrC-iC~~~~~~~~mi~Cd~C~-~w~H~~C~~~~~~~~p---~~w~C~~C~ 74 (98)
T 2lv9_A 26 TDVTRC-ICGFTHDDGYMICCDKCS-VWQHIDCMGIDRQHIP---DTYLCERCQ 74 (98)
T ss_dssp CCBCCC-TTSCCSCSSCEEEBTTTC-BEEETTTTTCCTTSCC---SSBCCTTTS
T ss_pred CCCEEe-ECCCccCCCcEEEcCCCC-CcCcCcCCCCCccCCC---CCEECCCCc
Confidence 355778 688876 57799999999 6777778753222221 269999996
No 73
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Probab=83.17 E-value=0.28 Score=47.25 Aligned_cols=47 Identities=19% Similarity=0.519 Sum_probs=34.8
Q ss_pred CCCCcccccccCCCCceEecCcCCCCcccHhHHhhhCCCCChhhhhccCCCCCCc
Q 002333 199 LERIKCHQCMKSERKYVVPCGKCRTKVYCIQCIKQWYPKMSELDVAEICPFCRRN 253 (935)
Q Consensus 199 g~~~~CHQCrqk~~~~~v~C~~C~r~~FC~~CL~~rY~e~~~edv~~~CP~CRg~ 253 (935)
.+...|--|..--...++ ..|+ -.||..||..|... -...||.||.-
T Consensus 29 ~~~~~C~IC~~~~~~pv~--~~Cg-H~FC~~Ci~~~~~~-----~~~~CP~Cr~~ 75 (141)
T 3knv_A 29 EAKYLCSACRNVLRRPFQ--AQCG-HRYCSFCLASILSS-----GPQNCAACVHE 75 (141)
T ss_dssp CGGGBCTTTCSBCSSEEE--CTTS-CEEEHHHHHHHGGG-----SCEECHHHHHT
T ss_pred CcCcCCCCCChhhcCcEE--CCCC-CccCHHHHHHHHhc-----CCCCCCCCCCc
Confidence 345789999876655544 4899 99999999999842 23578888763
No 74
>2oa2_A BH2720 protein; 10175341, structural genomics, joint center for STRU genomics, JCSG, protein structure initiative, PSI-2, unknow function; HET: MSE; 1.41A {Bacillus halodurans}
Probab=82.61 E-value=0.64 Score=43.92 Aligned_cols=25 Identities=40% Similarity=0.375 Sum_probs=21.9
Q ss_pred EEEeecCceeEecCCCccccccccc
Q 002333 843 TFEQKLGEAVFIPAGCPHQVRNLKS 867 (935)
Q Consensus 843 tf~Q~lGEAVFIPAGCPHQVRNLkS 867 (935)
++.=..||+|+||+|.||+++|..+
T Consensus 89 ~~~l~~Gd~i~ip~g~~H~~~n~~~ 113 (148)
T 2oa2_A 89 QEEVFDDYAILIPAGTWHNVRNTGN 113 (148)
T ss_dssp EEEEETTCEEEECTTCEEEEEECSS
T ss_pred eEEECCCCEEEECCCCcEEEEECCC
Confidence 3677899999999999999999854
No 75
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=82.60 E-value=0.27 Score=39.63 Aligned_cols=46 Identities=28% Similarity=0.799 Sum_probs=31.4
Q ss_pred CCcccccccCCC-----CceEecCcCCCCcccHhHHhhhCCCCChhhhhccCCCCCCc
Q 002333 201 RIKCHQCMKSER-----KYVVPCGKCRTKVYCIQCIKQWYPKMSELDVAEICPFCRRN 253 (935)
Q Consensus 201 ~~~CHQCrqk~~-----~~~v~C~~C~r~~FC~~CL~~rY~e~~~edv~~~CP~CRg~ 253 (935)
...|--|...-. ...+....|+ ..||..||..|... ...||.||..
T Consensus 3 ~~~C~IC~~~~~~~~~~~~~~~~~~Cg-H~fc~~Ci~~~~~~------~~~CP~Cr~~ 53 (64)
T 2xeu_A 3 MVSCPICMDGYSEIVQNGRLIVSTECG-HVFCSQCLRDSLKN------ANTCPTCRKK 53 (64)
T ss_dssp CCBCTTTCCBHHHHHHTTCCEEEETTS-CEEEHHHHHHHHHH------CSBCTTTCCB
T ss_pred CCCCCccChhhhCccccCCCEEeCCCC-CchhHHHHHHHHHc------CCCCCCCCcc
Confidence 356666665321 1233455799 89999999999742 4589999874
No 76
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=82.58 E-value=0.99 Score=38.13 Aligned_cols=46 Identities=17% Similarity=0.410 Sum_probs=34.8
Q ss_pred CCCcccccccCCCCceEecCcCCCCcccHhHHhhhCCCCChhhhhccCCCCCCc
Q 002333 200 ERIKCHQCMKSERKYVVPCGKCRTKVYCIQCIKQWYPKMSELDVAEICPFCRRN 253 (935)
Q Consensus 200 ~~~~CHQCrqk~~~~~v~C~~C~r~~FC~~CL~~rY~e~~~edv~~~CP~CRg~ 253 (935)
+...|--|..--...++. .|+ ..||..||..|+.. -...||.||..
T Consensus 7 ~~~~C~IC~~~~~~Pv~~--~Cg-H~fc~~Ci~~~~~~-----~~~~CP~C~~~ 52 (78)
T 1t1h_A 7 EYFRCPISLELMKDPVIV--STG-QTYERSSIQKWLDA-----GHKTCPKSQET 52 (78)
T ss_dssp SSSSCTTTSCCCSSEEEE--TTT-EEEEHHHHHHHHTT-----TCCBCTTTCCB
T ss_pred ccCCCCCccccccCCEEc--CCC-CeecHHHHHHHHHH-----CcCCCCCCcCC
Confidence 347888998766555543 699 99999999999953 14689999864
No 77
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=82.48 E-value=0.79 Score=41.75 Aligned_cols=44 Identities=32% Similarity=0.722 Sum_probs=33.2
Q ss_pred CcccccccCCCCceEecCcCCCCcccHhHHhhhCCCCChhhhhccCCCCCCc
Q 002333 202 IKCHQCMKSERKYVVPCGKCRTKVYCIQCIKQWYPKMSELDVAEICPFCRRN 253 (935)
Q Consensus 202 ~~CHQCrqk~~~~~v~C~~C~r~~FC~~CL~~rY~e~~~edv~~~CP~CRg~ 253 (935)
..|.-|...-...++. .|+ ..||..||..|.... ...||.||..
T Consensus 16 ~~C~iC~~~~~~p~~~--~Cg-H~fC~~Ci~~~~~~~-----~~~CP~Cr~~ 59 (115)
T 3l11_A 16 CQCGICMEILVEPVTL--PCN-HTLCKPCFQSTVEKA-----SLCCPFCRRR 59 (115)
T ss_dssp HBCTTTCSBCSSCEEC--TTS-CEECHHHHCCCCCTT-----TSBCTTTCCB
T ss_pred CCCccCCcccCceeEc--CCC-CHHhHHHHHHHHhHC-----cCCCCCCCcc
Confidence 6788888665544443 799 899999999998531 3689999873
No 78
>3cew_A Uncharacterized cupin protein; all beta-protein, jelly-roll (cupin-2), structural genomics, protein structure initiative; 2.31A {Bacteroides fragilis}
Probab=82.41 E-value=0.52 Score=42.86 Aligned_cols=30 Identities=13% Similarity=0.157 Sum_probs=24.8
Q ss_pred CccceEEEeecCceeEecCCCccccccccc
Q 002333 838 GVEPWTFEQKLGEAVFIPAGCPHQVRNLKS 867 (935)
Q Consensus 838 GVEpWtf~Q~lGEAVFIPAGCPHQVRNLkS 867 (935)
.|..-++.=..||+|+||+|.||+.+|..+
T Consensus 62 ~i~~~~~~l~~Gd~i~i~~~~~H~~~~~~~ 91 (125)
T 3cew_A 62 TIDGEKIELQAGDWLRIAPDGKRQISAASD 91 (125)
T ss_dssp EETTEEEEEETTEEEEECTTCCEEEEEBTT
T ss_pred EECCEEEEeCCCCEEEECCCCcEEEEcCCC
Confidence 344556777899999999999999999843
No 79
>3l2h_A Putative sugar phosphate isomerase; AFE_0303, structural GEN joint center for structural genomics, JCSG; HET: MSE CXS; 1.85A {Acidithiobacillus ferrooxidans}
Probab=82.38 E-value=0.67 Score=44.20 Aligned_cols=41 Identities=20% Similarity=0.136 Sum_probs=30.6
Q ss_pred ccceEEEeecCceeEecCC-CccccccccccceecccccCcc
Q 002333 839 VEPWTFEQKLGEAVFIPAG-CPHQVRNLKSCTKVAVDFVSPE 879 (935)
Q Consensus 839 VEpWtf~Q~lGEAVFIPAG-CPHQVRNLkSCIKVAlDFVSPE 879 (935)
|..=++.=..||+|+||+| .+|+++|.-+---+.+-+.+|-
T Consensus 83 ~~~~~~~l~~Gd~i~i~~~~~~H~~~n~~~~~~~~l~v~~p~ 124 (162)
T 3l2h_A 83 MENDQYPIAPGDFVGFPCHAAAHSISNDGTETLVCLVIGQRL 124 (162)
T ss_dssp ETTEEEEECTTCEEEECTTSCCEEEECCSSSCEEEEEEEECC
T ss_pred ECCEEEEeCCCCEEEECCCCceEEeEeCCCCCEEEEEEECCC
Confidence 3444677889999999998 9999999766444455555553
No 80
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=82.28 E-value=0.77 Score=37.31 Aligned_cols=45 Identities=29% Similarity=0.624 Sum_probs=32.6
Q ss_pred CCCcccccccCCCCceEecCcCCCCcccHhHHhhhCCCCChhhhhccCCCC
Q 002333 200 ERIKCHQCMKSERKYVVPCGKCRTKVYCIQCIKQWYPKMSELDVAEICPFC 250 (935)
Q Consensus 200 ~~~~CHQCrqk~~~~~v~C~~C~r~~FC~~CL~~rY~e~~~edv~~~CP~C 250 (935)
+...|--|...-...++. .|+ ..||..||.+|... ......||.|
T Consensus 19 ~~~~C~IC~~~~~~p~~~--~Cg-H~fC~~Ci~~~~~~---~~~~~~CP~C 63 (63)
T 2ysj_A 19 EEVICPICLDILQKPVTI--DCG-HNFCLKCITQIGET---SCGFFKCPLC 63 (63)
T ss_dssp CCCBCTTTCSBCSSCEEC--TTS-SEECHHHHHHHHHH---CSSCCCCSCC
T ss_pred cCCCCCcCCchhCCeEEe--CCC-CcchHHHHHHHHHc---CCCCCcCcCC
Confidence 347788898665544443 799 89999999999852 1234689998
No 81
>3jzv_A Uncharacterized protein RRU_A2000; structural genomics, cupin-2 fold, unknown function, PSI-2, structure initiative; HET: MSE; 2.30A {Rhodospirillum rubrum}
Probab=82.00 E-value=0.54 Score=46.26 Aligned_cols=30 Identities=23% Similarity=0.008 Sum_probs=24.6
Q ss_pred CccceEEEeecCceeEecCCCccccccccc
Q 002333 838 GVEPWTFEQKLGEAVFIPAGCPHQVRNLKS 867 (935)
Q Consensus 838 GVEpWtf~Q~lGEAVFIPAGCPHQVRNLkS 867 (935)
-|..=++.=..||+||||+|.||+++|...
T Consensus 87 ~v~g~~~~l~~GD~i~ip~g~~H~~~n~~~ 116 (166)
T 3jzv_A 87 MVGRAVSAVAPYDLVTIPGWSWHQFRAPAD 116 (166)
T ss_dssp EETTEEEEECTTCEEEECTTCCEEEECCTT
T ss_pred EECCEEEEeCCCCEEEECCCCcEEeEeCCC
Confidence 344456777899999999999999999754
No 82
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=81.91 E-value=0.6 Score=43.17 Aligned_cols=46 Identities=20% Similarity=0.550 Sum_probs=34.3
Q ss_pred CCcccccccCCCCceEecCcCCCCcccHhHHhhhCCCCChhhhhccCCCCCCcc
Q 002333 201 RIKCHQCMKSERKYVVPCGKCRTKVYCIQCIKQWYPKMSELDVAEICPFCRRNC 254 (935)
Q Consensus 201 ~~~CHQCrqk~~~~~v~C~~C~r~~FC~~CL~~rY~e~~~edv~~~CP~CRg~C 254 (935)
...|.-|...-...++ ..|+ ..||..||..|... -...||.||...
T Consensus 52 ~~~C~IC~~~~~~p~~--~~Cg-H~fC~~Ci~~~~~~-----~~~~CP~Cr~~~ 97 (124)
T 3fl2_A 52 TFQCICCQELVFRPIT--TVCQ-HNVCKDCLDRSFRA-----QVFSCPACRYDL 97 (124)
T ss_dssp HTBCTTTSSBCSSEEE--CTTS-CEEEHHHHHHHHHT-----TCCBCTTTCCBC
T ss_pred CCCCCcCChHHcCcEE--eeCC-CcccHHHHHHHHhH-----CcCCCCCCCccC
Confidence 3789999876554444 3799 89999999999852 234899999754
No 83
>1vj2_A Novel manganese-containing cupin TM1459; structural genomics, joint for structural genomics, JCSG; 1.65A {Thermotoga maritima} SCOP: b.82.1.10
Probab=81.45 E-value=0.6 Score=42.88 Aligned_cols=29 Identities=21% Similarity=0.106 Sum_probs=23.8
Q ss_pred ccceEEEeecCceeEecCCCccccccccc
Q 002333 839 VEPWTFEQKLGEAVFIPAGCPHQVRNLKS 867 (935)
Q Consensus 839 VEpWtf~Q~lGEAVFIPAGCPHQVRNLkS 867 (935)
|..=++.=..||+|+||+|.||+.+|..+
T Consensus 83 i~~~~~~l~~Gd~i~ip~g~~H~~~~~~~ 111 (126)
T 1vj2_A 83 KEQGEETVEEGFYIFVEPNEIHGFRNDTD 111 (126)
T ss_dssp CSSCEEEEETTEEEEECTTCCEEEECCSS
T ss_pred ECCEEEEECCCCEEEECCCCcEEeEeCCC
Confidence 44445666799999999999999999864
No 84
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=81.39 E-value=0.65 Score=41.68 Aligned_cols=47 Identities=21% Similarity=0.698 Sum_probs=33.7
Q ss_pred CCcccccccCCCCceEecCcCCCCcccHhHHhhhCCCCChhhhhccCCCCCCc
Q 002333 201 RIKCHQCMKSERKYVVPCGKCRTKVYCIQCIKQWYPKMSELDVAEICPFCRRN 253 (935)
Q Consensus 201 ~~~CHQCrqk~~~~~v~C~~C~r~~FC~~CL~~rY~e~~~edv~~~CP~CRg~ 253 (935)
...|--|...-...++ ..|+ ..||..||..|.... .....||.||..
T Consensus 21 ~~~C~IC~~~~~~p~~--~~Cg-H~fC~~Ci~~~~~~~---~~~~~CP~Cr~~ 67 (112)
T 1jm7_A 21 ILECPICLELIKEPVS--TKCD-HIFCKFCMLKLLNQK---KGPSQCPLCKND 67 (112)
T ss_dssp HTSCSSSCCCCSSCCB--CTTS-CCCCSHHHHHHHHSS---SSSCCCTTTSCC
T ss_pred CCCCcccChhhcCeEE--CCCC-CHHHHHHHHHHHHhC---CCCCCCcCCCCc
Confidence 3678888765544333 4799 999999999998532 123689999874
No 85
>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A
Probab=81.35 E-value=1.1 Score=38.17 Aligned_cols=40 Identities=28% Similarity=0.669 Sum_probs=30.9
Q ss_pred CCcccccccCCCCceEecCcCCCCc-ccHhHHhhhCCCCChhhhhccCCCCCCc
Q 002333 201 RIKCHQCMKSERKYVVPCGKCRTKV-YCIQCIKQWYPKMSELDVAEICPFCRRN 253 (935)
Q Consensus 201 ~~~CHQCrqk~~~~~v~C~~C~r~~-FC~~CL~~rY~e~~~edv~~~CP~CRg~ 253 (935)
...|--|.......++ ..|+ .. ||..|+.+| ..||.||..
T Consensus 24 ~~~C~iC~~~~~~~~~--~pCg-H~~~C~~C~~~~----------~~CP~Cr~~ 64 (74)
T 4ic3_A 24 EKLCKICMDRNIAIVF--VPCG-HLVTCKQCAEAV----------DKCPMCYTV 64 (74)
T ss_dssp HTBCTTTSSSBCCEEE--ETTC-CBCCCHHHHTTC----------SBCTTTCCB
T ss_pred CCCCCCCCCCCCCEEE--cCCC-ChhHHHHhhhcC----------ccCCCcCcC
Confidence 3689999877654443 3688 65 999999988 689999963
No 86
>4axo_A EUTQ, ethanolamine utilization protein; structural protein, bacterial microcompartment, BMC; 1.00A {Clostridium difficile}
Probab=80.92 E-value=0.71 Score=45.44 Aligned_cols=61 Identities=18% Similarity=0.186 Sum_probs=41.9
Q ss_pred cCCcccCccccCHHHHHHHHHHhCccceEEEeecCceeEecCCCccccccccccceecccccCccchH
Q 002333 815 IHPIHDQCFYLSSEHKKKLKEEFGVEPWTFEQKLGEAVFIPAGCPHQVRNLKSCTKVAVDFVSPENVD 882 (935)
Q Consensus 815 ~dPIHDQ~fYLt~ehk~rLkEEyGVEpWtf~Q~lGEAVFIPAGCPHQVRNLkSCIKVAlDFVSPEnV~ 882 (935)
.|.=+++.+|+-+-.- ++-|.+=++.=..||+||||+|.||..+|...|..+++ +.|-+..
T Consensus 80 ~~~~~eE~~yVLeG~~-----~l~i~g~~~~l~~GD~i~iP~G~~h~~~n~~~a~~l~V--~~P~~~~ 140 (151)
T 4axo_A 80 WTLNYDEIDYVIDGTL-----DIIIDGRKVSASSGELIFIPKGSKIQFSVPDYARFIYV--TYPADWA 140 (151)
T ss_dssp EECSSEEEEEEEEEEE-----EEEETTEEEEEETTCEEEECTTCEEEEEEEEEEEEEEE--EECSCC-
T ss_pred EeCCCcEEEEEEEeEE-----EEEECCEEEEEcCCCEEEECCCCEEEEEeCCCEEEEEE--ECCCCcc
Confidence 3444667777544221 12345557888899999999999999999988877776 4465443
No 87
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=80.92 E-value=0.79 Score=44.44 Aligned_cols=46 Identities=22% Similarity=0.644 Sum_probs=34.7
Q ss_pred CcccccccCCCCceEecCcCCCCcccHhHHhhhCCCCChhhhhccCCCCCCcc
Q 002333 202 IKCHQCMKSERKYVVPCGKCRTKVYCIQCIKQWYPKMSELDVAEICPFCRRNC 254 (935)
Q Consensus 202 ~~CHQCrqk~~~~~v~C~~C~r~~FC~~CL~~rY~e~~~edv~~~CP~CRg~C 254 (935)
..|--|...-.. .+.+..|+ ..||..||..|... -...||.||...
T Consensus 55 ~~C~IC~~~~~~-p~~~~~Cg-H~fC~~Ci~~~~~~-----~~~~CP~Cr~~~ 100 (165)
T 2ckl_B 55 LMCPICLDMLKN-TMTTKECL-HRFCADCIITALRS-----GNKECPTCRKKL 100 (165)
T ss_dssp HBCTTTSSBCSS-EEEETTTC-CEEEHHHHHHHHHT-----TCCBCTTTCCBC
T ss_pred CCCcccChHhhC-cCEeCCCC-ChhHHHHHHHHHHh-----CcCCCCCCCCcC
Confidence 689999755443 45556899 99999999999752 246799999854
No 88
>1x82_A Glucose-6-phosphate isomerase; cupin superfamily, hyperthermophIle, phosphoglucose isomerase, extremeophIle; HET: PA5; 1.50A {Pyrococcus furiosus} SCOP: b.82.1.7 PDB: 1x7n_A* 1x8e_A 1qxr_A* 1qxj_A* 1qy4_A* 2gc1_A* 2gc0_A* 2gc2_A* 2gc3_A* 3sxw_A 1j3q_A 1j3p_A 1j3r_A*
Probab=79.92 E-value=0.87 Score=45.43 Aligned_cols=40 Identities=13% Similarity=0.230 Sum_probs=30.8
Q ss_pred cceEEEeecCceeEecCCCccccccccccceecccccCcc
Q 002333 840 EPWTFEQKLGEAVFIPAGCPHQVRNLKSCTKVAVDFVSPE 879 (935)
Q Consensus 840 EpWtf~Q~lGEAVFIPAGCPHQVRNLkSCIKVAlDFVSPE 879 (935)
+.+++.=..||+|+||+|.||+.+|.-+--=+.+.+++|.
T Consensus 117 ~~~~~~l~~GD~v~ip~g~~H~~~N~g~~~~~~l~v~~~~ 156 (190)
T 1x82_A 117 DAKWISMEPGTVVYVPPYWAHRTVNIGDEPFIFLAIYPAD 156 (190)
T ss_dssp CEEEEEECTTCEEEECTTCEEEEEECSSSCEEEEEEEETT
T ss_pred cEEEEEECCCcEEEECCCCeEEEEECCcccEEEEEEECCC
Confidence 4567888999999999999999999865433445555554
No 89
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=79.92 E-value=1 Score=39.29 Aligned_cols=48 Identities=27% Similarity=0.615 Sum_probs=34.3
Q ss_pred CCCcccccccCCCCceEecCcCCCCcccHhHHhhhCCCCChhhhhccCCCCCCc
Q 002333 200 ERIKCHQCMKSERKYVVPCGKCRTKVYCIQCIKQWYPKMSELDVAEICPFCRRN 253 (935)
Q Consensus 200 ~~~~CHQCrqk~~~~~v~C~~C~r~~FC~~CL~~rY~e~~~edv~~~CP~CRg~ 253 (935)
+...|.-|...-...++ -..|+ ..||..||..|+... -...||.||..
T Consensus 12 ~~~~C~IC~~~~~~p~~-~~~Cg-H~fC~~Ci~~~~~~~----~~~~CP~Cr~~ 59 (92)
T 3ztg_A 12 DELLCLICKDIMTDAVV-IPCCG-NSYCDECIRTALLES----DEHTCPTCHQN 59 (92)
T ss_dssp TTTEETTTTEECSSCEE-CTTTC-CEECHHHHHHHHHHC----TTCCCTTTCCS
T ss_pred cCCCCCCCChhhcCceE-CCCCC-CHHHHHHHHHHHHhc----CCCcCcCCCCc
Confidence 44789999876554443 23499 999999999997421 13689999874
No 90
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=79.80 E-value=2.2 Score=39.17 Aligned_cols=44 Identities=25% Similarity=0.760 Sum_probs=33.3
Q ss_pred CCCcccccccCCCCceEecCcCCCCcccHhHHhhhCCCCChhhhhccCCCCCCc
Q 002333 200 ERIKCHQCMKSERKYVVPCGKCRTKVYCIQCIKQWYPKMSELDVAEICPFCRRN 253 (935)
Q Consensus 200 ~~~~CHQCrqk~~~~~v~C~~C~r~~FC~~CL~~rY~e~~~edv~~~CP~CRg~ 253 (935)
+...|--|...-...++. ..|+ ..||..||..|.. ..||.||..
T Consensus 21 ~~~~C~IC~~~~~~pv~~-~~Cg-H~fC~~Ci~~~~~--------~~CP~Cr~~ 64 (117)
T 1jm7_B 21 KLLRCSRCTNILREPVCL-GGCE-HIFCSNCVSDCIG--------TGCPVCYTP 64 (117)
T ss_dssp HTTSCSSSCSCCSSCBCC-CSSS-CCBCTTTGGGGTT--------TBCSSSCCB
T ss_pred hCCCCCCCChHhhCccEe-CCCC-CHHHHHHHHHHhc--------CCCcCCCCc
Confidence 348899997655443322 2688 9999999999985 589999986
No 91
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=79.80 E-value=0.52 Score=38.46 Aligned_cols=45 Identities=29% Similarity=0.829 Sum_probs=30.9
Q ss_pred CcccccccCCC-----CceEecCcCCCCcccHhHHhhhCCCCChhhhhccCCCCCCc
Q 002333 202 IKCHQCMKSER-----KYVVPCGKCRTKVYCIQCIKQWYPKMSELDVAEICPFCRRN 253 (935)
Q Consensus 202 ~~CHQCrqk~~-----~~~v~C~~C~r~~FC~~CL~~rY~e~~~edv~~~CP~CRg~ 253 (935)
..|--|...-. ...+.-..|+ ..||..||..|... ...||.||..
T Consensus 16 ~~C~IC~~~~~~~~~~~~~~~~~~Cg-H~fc~~Ci~~~~~~------~~~CP~Cr~~ 65 (69)
T 2ea6_A 16 VSCPICMDGYSEIVQNGRLIVSTECG-HVFCSQCLRDSLKN------ANTCPTCRKK 65 (69)
T ss_dssp CCCTTTCCCHHHHTTTTCCEEECSSS-CEEEHHHHHHHHHH------CSSCTTTCCC
T ss_pred CCCcccCccccccccccCCeEeCCCC-ChhcHHHHHHHHHc------CCCCCCCCCc
Confidence 55666665321 1233445788 89999999999742 4589999864
No 92
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=79.77 E-value=0.8 Score=44.42 Aligned_cols=46 Identities=22% Similarity=0.552 Sum_probs=34.9
Q ss_pred CcccccccCCCCceEecCcCCCCcccHhHHhhhCCCCChhhhhccCCCCCCccc
Q 002333 202 IKCHQCMKSERKYVVPCGKCRTKVYCIQCIKQWYPKMSELDVAEICPFCRRNCN 255 (935)
Q Consensus 202 ~~CHQCrqk~~~~~v~C~~C~r~~FC~~CL~~rY~e~~~edv~~~CP~CRg~CN 255 (935)
..|--|...-...++ ..|+ ..||..||..|... -...||.||....
T Consensus 79 ~~C~IC~~~~~~pv~--~~Cg-H~fC~~Ci~~~~~~-----~~~~CP~Cr~~~~ 124 (150)
T 1z6u_A 79 FMCVCCQELVYQPVT--TECF-HNVCKDCLQRSFKA-----QVFSCPACRHDLG 124 (150)
T ss_dssp TBCTTTSSBCSSEEE--CTTS-CEEEHHHHHHHHHT-----TCCBCTTTCCBCC
T ss_pred CEeecCChhhcCCEE--cCCC-CchhHHHHHHHHHh-----CCCcCCCCCccCC
Confidence 789999876555554 5799 89999999999853 2347999988543
No 93
>2lri_C Autoimmune regulator; Zn binding protein domain, apeced, transcription; NMR {Homo sapiens}
Probab=79.61 E-value=1.6 Score=37.35 Aligned_cols=48 Identities=17% Similarity=0.385 Sum_probs=36.1
Q ss_pred CCCcccccccCCCCceEecCcCCCCcccHhHHhhhCCCCChhhhhccCCCCCC
Q 002333 200 ERIKCHQCMKSERKYVVPCGKCRTKVYCIQCIKQWYPKMSELDVAEICPFCRR 252 (935)
Q Consensus 200 ~~~~CHQCrqk~~~~~v~C~~C~r~~FC~~CL~~rY~e~~~edv~~~CP~CRg 252 (935)
....|..|++. +.++.|-.|. ..|=..||.-.-..+. +-.|.||.|..
T Consensus 11 ~~~~C~vC~~~--~~ll~Cd~C~-~~~H~~Cl~P~l~~~P--~g~W~C~~C~~ 58 (66)
T 2lri_C 11 PGARCGVCGDG--TDVLRCTHCA-AAFHWRCHFPAGTSRP--GTGLRCRSCSG 58 (66)
T ss_dssp TTCCCTTTSCC--TTCEECSSSC-CEECHHHHCTTTCCCC--SSSCCCTTTTT
T ss_pred CCCCcCCCCCC--CeEEECCCCC-CceecccCCCccCcCC--CCCEECccccC
Confidence 34679999865 4599999999 8899999975444333 23599999975
No 94
>3a1b_A DNA (cytosine-5)-methyltransferase 3A, histone H3; zinc-finger, histone binding, chromosomal protein, DNA damag repair, DNA-binding, methylation; HET: DNA; 2.29A {Homo sapiens} PDB: 3a1a_A*
Probab=79.51 E-value=1.4 Score=44.11 Aligned_cols=55 Identities=18% Similarity=0.535 Sum_probs=44.3
Q ss_pred hhccCCCCcccccccCCCCceEecC--cCCCCcccHhHHhhhCCCCChhhh----hccCCCCCC
Q 002333 195 KEKELERIKCHQCMKSERKYVVPCG--KCRTKVYCIQCIKQWYPKMSELDV----AEICPFCRR 252 (935)
Q Consensus 195 k~~~g~~~~CHQCrqk~~~~~v~C~--~C~r~~FC~~CL~~rY~e~~~edv----~~~CP~CRg 252 (935)
++..|....|.+|-.. +.++.|. +|. ..||..||.+..+.-+.+++ .|.|=.|.-
T Consensus 73 ~DeDG~~~yC~wC~~G--g~l~~Cdn~~C~-r~FC~~CI~~nvG~~~~~~i~~~d~W~Cy~C~P 133 (159)
T 3a1b_A 73 YDDDGYQSYCTICCGG--REVLMCGNNNCC-RCFCVECVDLLVGPGAAQAAIKEDPWNCYMCGH 133 (159)
T ss_dssp BCTTSSBSSCTTTSCC--SEEEECSSTTTC-CEEEHHHHHHHTCTTHHHHHHTSSSCCCTTTCS
T ss_pred cCCCCCcceeeEecCC--CeEEeeCCCCCC-CchhHHHHHHhcCHhHHHHHhccCCCEEEecCC
Confidence 3456677899999976 5699999 599 89999999999997665554 499888764
No 95
>2lbm_A Transcriptional regulator ATRX; metal binding protein-structural protein compl; HET: M3L; NMR {Homo sapiens} PDB: 2ld1_A
Probab=79.48 E-value=0.86 Score=44.69 Aligned_cols=53 Identities=17% Similarity=0.491 Sum_probs=41.4
Q ss_pred hccCCCCcccccccCCCCceEecCcCCCCcccHhHHhhhCCCCCh-----hhhhccCCCCC
Q 002333 196 EKELERIKCHQCMKSERKYVVPCGKCRTKVYCIQCIKQWYPKMSE-----LDVAEICPFCR 251 (935)
Q Consensus 196 ~~~g~~~~CHQCrqk~~~~~v~C~~C~r~~FC~~CL~~rY~e~~~-----edv~~~CP~CR 251 (935)
+..|+...|-.|... +.++-|..|. ..||..||..-.+.-.. .+-.|.||.|+
T Consensus 58 d~Dg~~d~C~vC~~G--G~LlcCD~Cp-r~Fh~~Cl~p~l~~~~l~~i~~p~~~W~C~~C~ 115 (142)
T 2lbm_A 58 DSDGMDEQCRWCAEG--GNLICCDFCH-NAFCKKCILRNLGRKELSTIMDENNQWYCYICH 115 (142)
T ss_dssp CTTSCBCSCSSSCCC--SSEEECSSSC-CEEEHHHHHHHTCHHHHHHHHTSTTCCCCTTTC
T ss_pred cCCCCCCeecccCCC--CcEEeCCCCC-CeeeHhhcCCCCChhhhhhcccCCCCCEeeccc
Confidence 356777899999976 5599999999 99999999977653211 23469999995
No 96
>2o8q_A Hypothetical protein; cpuin-like fold, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.55A {Burkholderia xenovorans}
Probab=79.37 E-value=0.99 Score=41.38 Aligned_cols=60 Identities=25% Similarity=0.337 Sum_probs=38.8
Q ss_pred cCCcccCccccCHHHHHHHHHHhCccc-eEEEeecCceeEecCCCccccccccccceecccccCccc
Q 002333 815 IHPIHDQCFYLSSEHKKKLKEEFGVEP-WTFEQKLGEAVFIPAGCPHQVRNLKSCTKVAVDFVSPEN 880 (935)
Q Consensus 815 ~dPIHDQ~fYLt~ehk~rLkEEyGVEp-Wtf~Q~lGEAVFIPAGCPHQVRNLkSCIKVAlDFVSPEn 880 (935)
.|+-.++.+|+-.-.- ++-+.. -++.=..||+|+||+|.||..+|...-. ..+-+++|..
T Consensus 60 ~H~~~~E~~~vl~G~~-----~~~~~~~~~~~l~~Gd~~~ip~g~~H~~~~~~~~~-~~l~~~~p~~ 120 (134)
T 2o8q_A 60 THTVGFQLFYVLRGWV-----EFEYEDIGAVMLEAGGSAFQPPGVRHRELRHSDDL-EVLEIVSPAG 120 (134)
T ss_dssp EECCSCEEEEEEESEE-----EEEETTTEEEEEETTCEEECCTTCCEEEEEECTTC-EEEEEESSTT
T ss_pred ECCCCcEEEEEEeCEE-----EEEECCcEEEEecCCCEEEECCCCcEEeEeCCCCe-EEEEEECCCc
Confidence 4555566666543322 133344 5677899999999999999999965422 3344556654
No 97
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=79.27 E-value=1.3 Score=37.10 Aligned_cols=45 Identities=18% Similarity=0.687 Sum_probs=30.3
Q ss_pred CCcccccccCCC-CceEecCcCCCCcccHhHHhhhCCCCChhhhhccCCCCCC
Q 002333 201 RIKCHQCMKSER-KYVVPCGKCRTKVYCIQCIKQWYPKMSELDVAEICPFCRR 252 (935)
Q Consensus 201 ~~~CHQCrqk~~-~~~v~C~~C~r~~FC~~CL~~rY~e~~~edv~~~CP~CRg 252 (935)
...|--|...-. ...+.-..|+ ..||..||..|... ...||.||.
T Consensus 15 ~~~C~IC~~~~~~~~~~~~~~C~-H~f~~~Ci~~~~~~------~~~CP~Cr~ 60 (74)
T 2ep4_A 15 HELCAVCLEDFKPRDELGICPCK-HAFHRKCLIKWLEV------RKVCPLCNM 60 (74)
T ss_dssp SCBCSSSCCBCCSSSCEEEETTT-EEEEHHHHHHHHHH------CSBCTTTCC
T ss_pred CCCCcCCCcccCCCCcEEEcCCC-CEecHHHHHHHHHc------CCcCCCcCc
Confidence 367888876632 1222222588 88999999999742 248999986
No 98
>3lwc_A Uncharacterized protein; structural genomics, unknown function, joint center for STRU genomics, JCSG, protein structure initiative; HET: MSE; 1.40A {Rhizobium leguminosarum}
Probab=79.19 E-value=0.87 Score=42.31 Aligned_cols=37 Identities=22% Similarity=0.308 Sum_probs=26.9
Q ss_pred ceEEEeecCceeEecCCCccccccc-cccceecccccCcc
Q 002333 841 PWTFEQKLGEAVFIPAGCPHQVRNL-KSCTKVAVDFVSPE 879 (935)
Q Consensus 841 pWtf~Q~lGEAVFIPAGCPHQVRNL-kSCIKVAlDFVSPE 879 (935)
.=++.=..||+|+||||++|..+|. ..+. .+--++|-
T Consensus 76 g~~~~l~~GD~v~ip~g~~H~~~~~~~~~~--~l~v~~P~ 113 (119)
T 3lwc_A 76 GETVTAGPGEIVYMPKGETVTIRSHEEGAL--TAYVTYPH 113 (119)
T ss_dssp TEEEEECTTCEEEECTTCEEEEEEEEEEEE--EEEEEECC
T ss_pred CEEEEECCCCEEEECCCCEEEEEcCCCCeE--EEEEECCC
Confidence 3456678999999999999999997 3333 33445553
No 99
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=78.79 E-value=0.85 Score=39.05 Aligned_cols=50 Identities=24% Similarity=0.545 Sum_probs=33.5
Q ss_pred CCcccccccCCCC--ceEecCcCCCCcccHhHHhhhCCCCChhhhhccCCCCCCcc
Q 002333 201 RIKCHQCMKSERK--YVVPCGKCRTKVYCIQCIKQWYPKMSELDVAEICPFCRRNC 254 (935)
Q Consensus 201 ~~~CHQCrqk~~~--~~v~C~~C~r~~FC~~CL~~rY~e~~~edv~~~CP~CRg~C 254 (935)
...|--|...-.. ....-..|+ ..||..||.+|.... .....||.||..-
T Consensus 15 ~~~C~IC~~~~~~~~~~~~~~~Cg-H~fC~~Ci~~~~~~~---~~~~~CP~Cr~~~ 66 (88)
T 2ct2_A 15 VLECPICMESFTEEQLRPKLLHCG-HTICRQCLEKLLASS---INGVRCPFCSKIT 66 (88)
T ss_dssp CCBCTTTCCBCCTTSSCEEECSSS-CEEEHHHHHHHHHHC---SSCBCCTTTCCCB
T ss_pred CCCCccCCccccccCCCeEECCCC-ChhhHHHHHHHHHcC---CCCcCCCCCCCcc
Confidence 4678888765432 112223699 899999999997422 1246899999753
No 100
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=78.79 E-value=1.2 Score=36.53 Aligned_cols=46 Identities=20% Similarity=0.552 Sum_probs=30.8
Q ss_pred CcccccccC---CCCceEecCcCCCCcccHhHHhhhCCCCChhhhhccCCCCCCc
Q 002333 202 IKCHQCMKS---ERKYVVPCGKCRTKVYCIQCIKQWYPKMSELDVAEICPFCRRN 253 (935)
Q Consensus 202 ~~CHQCrqk---~~~~~v~C~~C~r~~FC~~CL~~rY~e~~~edv~~~CP~CRg~ 253 (935)
..|--|... +......=..|+ ..||..||.+|+.. ....||.||..
T Consensus 4 ~~C~IC~~~~~~~~~~~~~~~~Cg-H~fC~~Ci~~~~~~-----~~~~CP~Cr~~ 52 (65)
T 1g25_A 4 QGCPRCKTTKYRNPSLKLMVNVCG-HTLCESCVDLLFVR-----GAGNCPECGTP 52 (65)
T ss_dssp TCCSTTTTHHHHCSSCCEEECTTC-CCEEHHHHHHHHHT-----TSSSCTTTCCC
T ss_pred CcCCcCCCCccCCCccCeecCCCC-CHhHHHHHHHHHHc-----CCCcCCCCCCc
Confidence 567788761 221111224699 89999999999743 13589999874
No 101
>4i4a_A Similar to unknown protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE; 1.35A {Photorhabdus luminescens subsp}
Probab=78.30 E-value=1.8 Score=39.08 Aligned_cols=56 Identities=14% Similarity=0.192 Sum_probs=36.0
Q ss_pred hCccceEEEeecCceeEecCCCcccccccc--ccceecccccCccchHHHHHHHHHhhcCCc
Q 002333 837 FGVEPWTFEQKLGEAVFIPAGCPHQVRNLK--SCTKVAVDFVSPENVDECLRLTKEFRLLPK 896 (935)
Q Consensus 837 yGVEpWtf~Q~lGEAVFIPAGCPHQVRNLk--SCIKVAlDFVSPEnV~eC~rLteEfR~Lp~ 896 (935)
+-|..=++.=..||+|+||+|.+|+++|.. .+.-+++ +++|+-+. .+..+...-|.
T Consensus 67 ~~i~~~~~~l~~Gd~~~i~~~~~H~~~~~~~~~~~~~~i-~f~~~~~~---~~~~~~~~~~~ 124 (128)
T 4i4a_A 67 IRINDEDFPVTKGDLIIIPLDSEHHVINNNQEDFHFYTI-WWDKESTL---NFLTRLEQDHH 124 (128)
T ss_dssp EEETTEEEEEETTCEEEECTTCCEEEEECSSSCEEEEEE-EECHHHHH---HHHHHHHHC--
T ss_pred EEECCEEEEECCCcEEEECCCCcEEeEeCCCCCEEEEEE-EECHHHHH---HHHHhcccccc
Confidence 345555777899999999999999999973 3333343 34555444 35555554443
No 102
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=77.78 E-value=1.1 Score=36.89 Aligned_cols=48 Identities=27% Similarity=0.763 Sum_probs=33.2
Q ss_pred CCCcccccccCCC-----CceEecCcCCCCcccHhHHhhhCCCCChhhhhccCCCCCCcc
Q 002333 200 ERIKCHQCMKSER-----KYVVPCGKCRTKVYCIQCIKQWYPKMSELDVAEICPFCRRNC 254 (935)
Q Consensus 200 ~~~~CHQCrqk~~-----~~~v~C~~C~r~~FC~~CL~~rY~e~~~edv~~~CP~CRg~C 254 (935)
+...|--|...-. +..+....|+ ..||..||..|... ...||.||..-
T Consensus 9 ~~~~C~IC~~~~~~~~~~~~~~~~~~Cg-H~fc~~Ci~~~~~~------~~~CP~Cr~~~ 61 (71)
T 3ng2_A 9 GTVSCPICMDGYSEIVQNGRLIVSTECG-HVFCSQCLRDSLKN------ANTCPTCRKKI 61 (71)
T ss_dssp TCCBCTTTCCBHHHHHTTTCCEEECTTS-CEEEHHHHHHHHHH------CSBCTTTCCBC
T ss_pred CCCCCcccChhhhccccccCCeEeCCCC-ChHhHHHHHHHHHc------CCCCCCCCCcc
Confidence 3466777775421 2334556799 89999999999742 25899998743
No 103
>2bnm_A Epoxidase; oxidoreductase, cupin, HTH, cation-dependant, zinc, fosfomycin; 1.7A {Streptomyces wedmorensis} SCOP: a.35.1.3 b.82.1.10 PDB: 1zz7_A 1zz8_A 1zz9_A 1zzb_A 1zz6_A 1zzc_A 2bnn_A 2bno_A 3scf_A 3scg_A 3sch_A
Probab=77.76 E-value=0.95 Score=44.27 Aligned_cols=45 Identities=11% Similarity=0.141 Sum_probs=32.1
Q ss_pred cCCcccCccccCHHHHHHHHHHhCccc----eEEEeecCceeEecCCCccccccc
Q 002333 815 IHPIHDQCFYLSSEHKKKLKEEFGVEP----WTFEQKLGEAVFIPAGCPHQVRNL 865 (935)
Q Consensus 815 ~dPIHDQ~fYLt~ehk~rLkEEyGVEp----Wtf~Q~lGEAVFIPAGCPHQVRNL 865 (935)
.||- ++-+|+-.-.- ++.|.. =++.=..||+|+||+|.||+++|.
T Consensus 137 ~h~~-~E~~~Vl~G~~-----~~~~~~~~~~~~~~l~~GD~~~~~~~~~H~~~n~ 185 (198)
T 2bnm_A 137 GHAG-NEFLFVLEGEI-----HMKWGDKENPKEALLPTGASMFVEEHVPHAFTAA 185 (198)
T ss_dssp CCSS-CEEEEEEESCE-----EEEESCTTSCEEEEECTTCEEEECTTCCEEEEES
T ss_pred cCCC-eEEEEEEeeeE-----EEEECCcCCcccEEECCCCEEEeCCCCceEEEec
Confidence 4443 56666643321 244555 677888999999999999999998
No 104
>3rns_A Cupin 2 conserved barrel domain protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MSE; 2.07A {Leptotrichia buccalis}
Probab=77.73 E-value=0.84 Score=46.49 Aligned_cols=48 Identities=25% Similarity=0.356 Sum_probs=34.1
Q ss_pred cCCcccCccccCHHHHHHHHHHhCccceEEEeecCceeEecCCCcccccc-cccc
Q 002333 815 IHPIHDQCFYLSSEHKKKLKEEFGVEPWTFEQKLGEAVFIPAGCPHQVRN-LKSC 868 (935)
Q Consensus 815 ~dPIHDQ~fYLt~ehk~rLkEEyGVEpWtf~Q~lGEAVFIPAGCPHQVRN-LkSC 868 (935)
.|| +++-+|+-.-.- ++.|..=++.=..||+|+||||+||.++| ...|
T Consensus 170 ~H~-~~e~~~Vl~G~~-----~~~i~g~~~~l~~Gd~i~ip~~~~H~~~~~~~~~ 218 (227)
T 3rns_A 170 KAP-GDALVTVLDGEG-----KYYVDGKPFIVKKGESAVLPANIPHAVEAETENF 218 (227)
T ss_dssp CCS-SEEEEEEEEEEE-----EEEETTEEEEEETTEEEEECTTSCEEEECCSSCE
T ss_pred ECC-CcEEEEEEeEEE-----EEEECCEEEEECCCCEEEECCCCcEEEEeCCCCE
Confidence 466 566666544322 24445556777899999999999999999 7654
No 105
>3bcw_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 1.60A {Bordetella bronchiseptica RB50}
Probab=77.67 E-value=0.82 Score=43.03 Aligned_cols=30 Identities=20% Similarity=0.313 Sum_probs=25.3
Q ss_pred EEeecCceeEecCCCccccccccccceecc
Q 002333 844 FEQKLGEAVFIPAGCPHQVRNLKSCTKVAV 873 (935)
Q Consensus 844 f~Q~lGEAVFIPAGCPHQVRNLkSCIKVAl 873 (935)
+.=..||+|+||+|.||..+|....-|+-+
T Consensus 89 ~~l~~GD~~~ip~g~~h~~~~~~~~rK~yv 118 (123)
T 3bcw_A 89 HAVKAGDAFIMPEGYTGRWEVDRHVKKIYF 118 (123)
T ss_dssp EEEETTCEEEECTTCCCEEEEEEEEEEEEE
T ss_pred EEECCCCEEEECCCCeEEEEECCceeEEEE
Confidence 445789999999999999999988777643
No 106
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=77.21 E-value=0.54 Score=38.96 Aligned_cols=43 Identities=28% Similarity=0.836 Sum_probs=32.0
Q ss_pred CCCcccccccCCCCceEecCcCCCCcccHhHHhhhCCCCChhhhhccCCCCCC
Q 002333 200 ERIKCHQCMKSERKYVVPCGKCRTKVYCIQCIKQWYPKMSELDVAEICPFCRR 252 (935)
Q Consensus 200 ~~~~CHQCrqk~~~~~v~C~~C~r~~FC~~CL~~rY~e~~~edv~~~CP~CRg 252 (935)
+...|--|...-.. .-..|+ ..||..||..|... ...||.||.
T Consensus 14 ~~~~C~IC~~~~~~---~~~~Cg-H~fc~~Ci~~~~~~------~~~CP~Cr~ 56 (70)
T 2ecn_A 14 DEEECCICMDGRAD---LILPCA-HSFCQKCIDKWSDR------HRNCPICRL 56 (70)
T ss_dssp CCCCCSSSCCSCCS---EEETTT-EEECHHHHHHSSCC------CSSCHHHHH
T ss_pred CCCCCeeCCcCccC---cccCCC-CcccHHHHHHHHHC------cCcCCCcCC
Confidence 34678888877655 223588 88999999999862 458998875
No 107
>1y3t_A Hypothetical protein YXAG; BI cupin, dioxygenase, oxidoreductase; 2.40A {Bacillus subtilis} SCOP: b.82.1.5 PDB: 2h0v_A*
Probab=76.55 E-value=1.1 Score=47.30 Aligned_cols=51 Identities=16% Similarity=0.183 Sum_probs=39.1
Q ss_pred hCccceEEEeecCceeEecCCCccccccccccceecccccCccchHHHHHHH
Q 002333 837 FGVEPWTFEQKLGEAVFIPAGCPHQVRNLKSCTKVAVDFVSPENVDECLRLT 888 (935)
Q Consensus 837 yGVEpWtf~Q~lGEAVFIPAGCPHQVRNLkSCIKVAlDFVSPEnV~eC~rLt 888 (935)
+-|..-++.=..||.++||+|+||+.+|... --..+-+++|....+-++-.
T Consensus 252 ~~i~~~~~~l~~GD~~~ip~~~~H~~~n~~~-~~~~l~v~~~~~~~~~~~~~ 302 (337)
T 1y3t_A 252 MWTDGQEIQLNPGDFLHVPANTVHSYRLDSH-YTKMVGVLVPGLFEPFFRTL 302 (337)
T ss_dssp EEETTEEEEECTTCEEEECTTCCEEEEECSS-SEEEEEEEESSTTTHHHHHH
T ss_pred EEECCEEEEECCCCEEEECCCCeEEEEECCC-CeEEEEEEcCccHHHHHHHh
Confidence 3455567888999999999999999999976 34455667888887655433
No 108
>3i7d_A Sugar phosphate isomerase; YP_168127.1, structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; 2.30A {Ruegeria pomeroyi dss-3}
Probab=76.00 E-value=1.5 Score=42.54 Aligned_cols=42 Identities=17% Similarity=0.093 Sum_probs=31.0
Q ss_pred CccceEEEeecCceeEecCC--CccccccccccceecccccCcc
Q 002333 838 GVEPWTFEQKLGEAVFIPAG--CPHQVRNLKSCTKVAVDFVSPE 879 (935)
Q Consensus 838 GVEpWtf~Q~lGEAVFIPAG--CPHQVRNLkSCIKVAlDFVSPE 879 (935)
-|..=++.=..||+|+||+| .+|+++|.-+---+.+-+.+|-
T Consensus 79 ~~~~~~~~l~~GD~i~ip~~~~~~H~~~n~~~~~~~~l~v~~p~ 122 (163)
T 3i7d_A 79 VDDQGEHPMVPGDCAAFPAGDPNGHQFVNRTDAPATFLVVGTRT 122 (163)
T ss_dssp EETTEEEEECTTCEEEECTTCCCCBEEECCSSSCEEEEEEEECC
T ss_pred EECCEEEEeCCCCEEEECCCCCcceEEEECCCCCEEEEEEECCC
Confidence 34445677789999999999 9999999866444445555543
No 109
>1qwr_A Mannose-6-phosphate isomerase; structural genomics, D-mannose 6-phosphate, PSI, protein structure initiative; 1.80A {Bacillus subtilis} SCOP: b.82.1.3
Probab=75.94 E-value=0.91 Score=49.26 Aligned_cols=17 Identities=29% Similarity=0.651 Sum_probs=15.0
Q ss_pred eecCceeEecCCCcccc
Q 002333 846 QKLGEAVFIPAGCPHQV 862 (935)
Q Consensus 846 Q~lGEAVFIPAGCPHQV 862 (935)
=++|||+|||||.||=.
T Consensus 162 l~pGd~~~ipaGt~HA~ 178 (319)
T 1qwr_A 162 IKPGDFYYVPSGTLHAL 178 (319)
T ss_dssp CCTTCEEEECTTCCEEE
T ss_pred cCCCCEEEcCCCCceEe
Confidence 35899999999999974
No 110
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=75.81 E-value=2.6 Score=36.48 Aligned_cols=30 Identities=23% Similarity=0.840 Sum_probs=23.7
Q ss_pred ecCcCCCCcccHhHHhhhCCCCChhhhhccCCCCCCc
Q 002333 217 PCGKCRTKVYCIQCIKQWYPKMSELDVAEICPFCRRN 253 (935)
Q Consensus 217 ~C~~C~r~~FC~~CL~~rY~e~~~edv~~~CP~CRg~ 253 (935)
.-..|+ ..|+..||.+|.... ..||.||..
T Consensus 44 ~~~~C~-H~FH~~Ci~~Wl~~~------~~CP~CR~~ 73 (81)
T 2ecl_A 44 VWGECN-HSFHNCCMSLWVKQN------NRCPLCQQD 73 (81)
T ss_dssp EEETTS-CEEEHHHHHHHTTTC------CBCTTTCCB
T ss_pred EeCCCC-CccChHHHHHHHHhC------CCCCCcCCC
Confidence 333688 999999999998643 389999964
No 111
>1fi2_A Oxalate oxidase, germin; beta-jellyroll, oxidoreductase; 1.60A {Hordeum vulgare} SCOP: b.82.1.2 PDB: 2et1_A 2ete_A* 2et7_A
Probab=75.80 E-value=1.7 Score=43.48 Aligned_cols=39 Identities=23% Similarity=0.261 Sum_probs=29.5
Q ss_pred eEEEeecCceeEecCCCccccccccccceecccccCccc
Q 002333 842 WTFEQKLGEAVFIPAGCPHQVRNLKSCTKVAVDFVSPEN 880 (935)
Q Consensus 842 Wtf~Q~lGEAVFIPAGCPHQVRNLkSCIKVAlDFVSPEn 880 (935)
.++.=..||+++||+|.+|.++|.-.---+.+-+.++.+
T Consensus 119 ~~~~l~~GD~~~iP~g~~H~~~N~g~~~~~~l~v~~~~~ 157 (201)
T 1fi2_A 119 YSRVVRAGETFVIPRGLMHFQFNVGKTEAYMVVSFNSQN 157 (201)
T ss_dssp EEEEEETTCEEEECTTCCEEEEECSSSCEEEEEEESSSC
T ss_pred EEEEECCCCEEEECCCCeEEEEeCCCCCEEEEEEECCCC
Confidence 366778899999999999999998654444555555554
No 112
>4h7l_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, cupin, unknown function; 2.45A {Planctomyces limnophilus}
Probab=75.76 E-value=0.43 Score=47.45 Aligned_cols=47 Identities=15% Similarity=0.208 Sum_probs=35.7
Q ss_pred cccCCcccCccccCH--HHHHHHHHHhCccceEEEeecCceeEecCCCcccccc
Q 002333 813 QVIHPIHDQCFYLSS--EHKKKLKEEFGVEPWTFEQKLGEAVFIPAGCPHQVRN 864 (935)
Q Consensus 813 ~v~dPIHDQ~fYLt~--ehk~rLkEEyGVEpWtf~Q~lGEAVFIPAGCPHQVRN 864 (935)
...|+-+++.||+-. -.- ++-|..=++.=+.||+|+||+|.+|++.+
T Consensus 60 ~H~H~~~~E~~yVLe~~G~g-----~v~idge~~~l~~GD~v~IPpg~~H~i~g 108 (157)
T 4h7l_A 60 THYHREHQEIYVVLDHAAHA-----TIELNGQSYPLTKLLAISIPPLVRHRIVG 108 (157)
T ss_dssp CBBCSSCEEEEEEEEECTTC-----EEEETTEEEECCTTEEEEECTTCCEEEES
T ss_pred ceECCCCcEEEEEEecCcEE-----EEEECCEEEEeCCCCEEEECCCCeEeeEC
Confidence 346777888888754 222 34556667888999999999999999986
No 113
>2pv0_B DNA (cytosine-5)-methyltransferase 3-like; DNMT3L, unmethylated H3K4, de novo DNA methylation, transferase regulator; HET: DNA; 3.30A {Homo sapiens} PDB: 2pvc_B*
Probab=75.70 E-value=2 Score=48.29 Aligned_cols=55 Identities=20% Similarity=0.582 Sum_probs=44.0
Q ss_pred hhccCCCCcccccccCCCCceEecC--cCCCCcccHhHHhhhCCCCChhhh----hccCCCCCC
Q 002333 195 KEKELERIKCHQCMKSERKYVVPCG--KCRTKVYCIQCIKQWYPKMSELDV----AEICPFCRR 252 (935)
Q Consensus 195 k~~~g~~~~CHQCrqk~~~~~v~C~--~C~r~~FC~~CL~~rY~e~~~edv----~~~CP~CRg 252 (935)
++..|....|.+|... +.++.|. +|. ..||..||.+..+.-..+++ .|.|=.|.-
T Consensus 87 ~D~DG~~~yCr~C~~G--g~l~~Cdn~~C~-r~FC~~Ci~~n~g~~~~~~i~~~d~W~Cf~C~p 147 (386)
T 2pv0_B 87 YDDDGYQSYCSICCSG--ETLLICGNPDCT-RCYCFECVDSLVGPGTSGKVHAMSNWVCYLCLP 147 (386)
T ss_dssp BCSSSSBCSCTTTCCC--SSCEECCSTTCC-CEECHHHHHHHTCTTHHHHHHHCSSCCCTTTSS
T ss_pred cCCCCCcccceEcCCC--CeEEEeCCCCCC-cchHHHHHHHhcChhHHHHhhccCCceEEEcCC
Confidence 3356777899999976 4599999 799 89999999999987655543 499988764
No 114
>3o36_A Transcription intermediary factor 1-alpha; TRIM24, PHD finger, bromodomain, H4K16 acetylation, breast C transcription-protein binding complex; HET: ALY; 1.70A {Homo sapiens} PDB: 3o33_A* 3o34_A* 3o35_A* 3o37_A
Probab=75.09 E-value=4.1 Score=40.47 Aligned_cols=49 Identities=27% Similarity=0.577 Sum_probs=36.5
Q ss_pred CCCcccccccCCCCceEecCcCCCCcccHhHHhhhCCCCChhhhhccCCCCCCc
Q 002333 200 ERIKCHQCMKSERKYVVPCGKCRTKVYCIQCIKQWYPKMSELDVAEICPFCRRN 253 (935)
Q Consensus 200 ~~~~CHQCrqk~~~~~v~C~~C~r~~FC~~CL~~rY~e~~~edv~~~CP~CRg~ 253 (935)
+...|..|++. +.++.|-.|. ..|-..|+..-....+ +-.|.||.|+..
T Consensus 3 ~~~~C~~C~~~--g~ll~Cd~C~-~~~H~~C~~p~l~~~p--~~~W~C~~C~~~ 51 (184)
T 3o36_A 3 NEDWCAVCQNG--GELLCCEKCP-KVFHLSCHVPTLTNFP--SGEWICTFCRDL 51 (184)
T ss_dssp SCSSCTTTCCC--SSCEECSSSS-CEECTTTSSSCCSSCC--SSCCCCTTTSCS
T ss_pred CCCccccCCCC--CeeeecCCCC-cccCccccCCCCCCCC--CCCEECccccCc
Confidence 34679999866 5599999999 8888899865444332 335999999863
No 115
>1zx5_A Mannosephosphate isomerase, putative; STRU genomics, PSI, protein structure initiative, midwest center structural genomics, MCSG; HET: LFR; 2.30A {Archaeoglobus fulgidus} SCOP: b.82.1.3
Probab=75.08 E-value=1 Score=48.65 Aligned_cols=18 Identities=28% Similarity=0.370 Sum_probs=15.4
Q ss_pred EeecCceeEecCCCcccc
Q 002333 845 EQKLGEAVFIPAGCPHQV 862 (935)
Q Consensus 845 ~Q~lGEAVFIPAGCPHQV 862 (935)
.=++|||+|||||.||=.
T Consensus 161 ~l~pGd~~~ipaGt~HA~ 178 (300)
T 1zx5_A 161 ETTPYDTFVIRPGIPHAG 178 (300)
T ss_dssp ECCTTCEEEECTTCCEEE
T ss_pred ECCCCCEEEcCCCCceEc
Confidence 346899999999999964
No 116
>2f4p_A Hypothetical protein TM1010; double-stranded beta-helix fold, structural genomics, joint for structural genomics, JCSG; HET: UNL; 1.90A {Thermotoga maritima} SCOP: b.82.1.9
Probab=74.57 E-value=1.6 Score=41.37 Aligned_cols=35 Identities=20% Similarity=0.132 Sum_probs=25.6
Q ss_pred EEeecCceeEecCCCccccccccccceecccccCc
Q 002333 844 FEQKLGEAVFIPAGCPHQVRNLKSCTKVAVDFVSP 878 (935)
Q Consensus 844 f~Q~lGEAVFIPAGCPHQVRNLkSCIKVAlDFVSP 878 (935)
+.=..||+|+||+|.||+.+|....--+.+-++.|
T Consensus 89 ~~l~~Gd~i~ip~~~~H~~~n~~~~~~~~l~v~~~ 123 (147)
T 2f4p_A 89 RILKKGDVVEIPPNVVHWHGAAPDEELVHIGISTQ 123 (147)
T ss_dssp EEEETTCEEEECTTCCEEEEEBTTBCEEEEEEECC
T ss_pred EEECCCCEEEECCCCcEEeEeCCCCCEEEEEEEcc
Confidence 55679999999999999999986543333444443
No 117
>1wil_A KIAA1045 protein; ring finger domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: g.50.1.3
Probab=73.89 E-value=2 Score=38.99 Aligned_cols=52 Identities=19% Similarity=0.553 Sum_probs=41.8
Q ss_pred CCCcccccccCCCCceEecCcCCCCcccHhHHhh-hCCCCC---------hhhhhccCCCCCC
Q 002333 200 ERIKCHQCMKSERKYVVPCGKCRTKVYCIQCIKQ-WYPKMS---------ELDVAEICPFCRR 252 (935)
Q Consensus 200 ~~~~CHQCrqk~~~~~v~C~~C~r~~FC~~CL~~-rY~e~~---------~edv~~~CP~CRg 252 (935)
.-.+|-.|.+-+...+.+|+-|+ +.|=..||++ .|..-. .-++-|.||.|-.
T Consensus 14 ~D~~C~VC~~~t~~~l~pCRvC~-RvfH~~CL~r~gy~~~~~a~e~~l~A~T~~GWSC~~Cen 75 (89)
T 1wil_A 14 NDEMCDVCEVWTAESLFPCRVCT-RVFHDGCLRRMGYIQGDSAAEVTEMAHTETGWSCHYCDN 75 (89)
T ss_dssp CSCCCTTTCCCCSSCCSSCSSSS-SCCCHHHHHHHTSCCCCCCCSCSCCCSSSSSCCCTTTCC
T ss_pred CCcccCccccccccceecccccc-ccccHhhcccccccccHHHHHHHHccCCCCCccccccch
Confidence 44789999999999999999999 8899999999 575432 1245699999954
No 118
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*
Probab=72.82 E-value=2.1 Score=48.16 Aligned_cols=47 Identities=26% Similarity=0.767 Sum_probs=34.5
Q ss_pred CCCcccccccCCCCceEecCcCCCCcccHhHHhhhCCCCChhhhhccCCCCCCcc
Q 002333 200 ERIKCHQCMKSERKYVVPCGKCRTKVYCIQCIKQWYPKMSELDVAEICPFCRRNC 254 (935)
Q Consensus 200 ~~~~CHQCrqk~~~~~v~C~~C~r~~FC~~CL~~rY~e~~~edv~~~CP~CRg~C 254 (935)
....|.-|...-.. .....|+ ..||..||..|... ....||.||...
T Consensus 331 ~~~~C~ICle~~~~--pv~lpCG-H~FC~~Ci~~wl~~-----~~~~CP~CR~~i 377 (389)
T 2y1n_A 331 TFQLCKICAENDKD--VKIEPCG-HLMCTSCLTSWQES-----EGQGCPFCRCEI 377 (389)
T ss_dssp SSSBCTTTSSSBCC--EEEETTC-CEECHHHHHHHHHH-----TCSBCTTTCCBC
T ss_pred CCCCCCccCcCCCC--eEEeCCC-ChhhHHHHHHHHhc-----CCCCCCCCCCcc
Confidence 34689999876543 3345799 88999999998641 345899999753
No 119
>3u5n_A E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, bromodomain, TGF-beta, epigenetics, methylation, K9ME3, K14AC, transcription; HET: M3L ALY; 1.95A {Homo sapiens} PDB: 3u5m_A* 3u5o_A* 3u5p_A*
Probab=72.70 E-value=3.5 Score=41.87 Aligned_cols=50 Identities=26% Similarity=0.527 Sum_probs=37.4
Q ss_pred CCCCcccccccCCCCceEecCcCCCCcccHhHHhhhCCCCChhhhhccCCCCCCc
Q 002333 199 LERIKCHQCMKSERKYVVPCGKCRTKVYCIQCIKQWYPKMSELDVAEICPFCRRN 253 (935)
Q Consensus 199 g~~~~CHQCrqk~~~~~v~C~~C~r~~FC~~CL~~rY~e~~~edv~~~CP~CRg~ 253 (935)
++...|..|++. +.++.|-.|. ..|-..|+..-....+ +-.|.||.|+..
T Consensus 5 ~~~~~C~~C~~~--g~ll~Cd~C~-~~~H~~Cl~p~l~~~p--~~~W~C~~C~~~ 54 (207)
T 3u5n_A 5 PNEDWCAVCQNG--GDLLCCEKCP-KVFHLTCHVPTLLSFP--SGDWICTFCRDI 54 (207)
T ss_dssp SSCSSBTTTCCC--EEEEECSSSS-CEECTTTSSSCCSSCC--SSCCCCTTTSCS
T ss_pred CCCCCCCCCCCC--CceEEcCCCC-CccCCccCCCCCCCCC--CCCEEeCceeCc
Confidence 455789999866 4699999999 8898999865443332 235999999863
No 120
>1o4t_A Putative oxalate decarboxylase; double-stranded beta-helix fold, structural genomics, joint for structural genomics, JCSG; 1.95A {Thermotoga maritima} SCOP: b.82.1.9
Probab=72.38 E-value=1.3 Score=41.15 Aligned_cols=31 Identities=23% Similarity=0.328 Sum_probs=25.4
Q ss_pred hCccceEEEeecCceeEecCCCccccccccc
Q 002333 837 FGVEPWTFEQKLGEAVFIPAGCPHQVRNLKS 867 (935)
Q Consensus 837 yGVEpWtf~Q~lGEAVFIPAGCPHQVRNLkS 867 (935)
+-|..-++.=..||+++||+|.||+.+|.-.
T Consensus 91 ~~i~~~~~~l~~Gd~i~i~~~~~H~~~n~~~ 121 (133)
T 1o4t_A 91 FHDNGKDVPIKAGDVCFTDSGESHSIENTGN 121 (133)
T ss_dssp EEETTEEEEEETTEEEEECTTCEEEEECCSS
T ss_pred EEECCEEEEeCCCcEEEECCCCcEEeEECCC
Confidence 3445567777899999999999999999754
No 121
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=72.26 E-value=1.4 Score=39.90 Aligned_cols=38 Identities=24% Similarity=0.469 Sum_probs=26.4
Q ss_pred eEecCcCCCCcccHhHHhhhCCCCChhhhhccCCCCCCcc
Q 002333 215 VVPCGKCRTKVYCIQCIKQWYPKMSELDVAEICPFCRRNC 254 (935)
Q Consensus 215 ~v~C~~C~r~~FC~~CL~~rY~e~~~edv~~~CP~CRg~C 254 (935)
++.-..|+ ..||..||..|...- .......||.||..-
T Consensus 55 ~~~~~~C~-H~Fh~~Ci~~wl~~~-~~~~~~~CP~CR~~~ 92 (114)
T 1v87_A 55 VGRLTKCS-HAFHLLCLLAMYCNG-NKDGSLQCPSCKTIY 92 (114)
T ss_dssp CEEESSSC-CEECHHHHHHHHHHT-CCSSCCBCTTTCCBS
T ss_pred ceecCCCC-CcccHHHHHHHHHcc-cCCCCCcCCCCCCcc
Confidence 44456798 899999999998210 002346899999753
No 122
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=71.75 E-value=1.5 Score=39.85 Aligned_cols=45 Identities=27% Similarity=0.662 Sum_probs=33.8
Q ss_pred CCcccccccCCCCceEecCcCCCCcccHhHHhhhCCCCChhhhhccCCCCCCc
Q 002333 201 RIKCHQCMKSERKYVVPCGKCRTKVYCIQCIKQWYPKMSELDVAEICPFCRRN 253 (935)
Q Consensus 201 ~~~CHQCrqk~~~~~v~C~~C~r~~FC~~CL~~rY~e~~~edv~~~CP~CRg~ 253 (935)
...|--|...-...++ ..|+ ..||..||..|... ....||.||..
T Consensus 23 ~~~C~IC~~~~~~p~~--~~Cg-H~fC~~Ci~~~~~~-----~~~~CP~Cr~~ 67 (116)
T 1rmd_A 23 SISCQICEHILADPVE--TSCK-HLFCRICILRCLKV-----MGSYCPSCRYP 67 (116)
T ss_dssp HTBCTTTCSBCSSEEE--CTTS-CEEEHHHHHHHHHH-----TCSBCTTTCCB
T ss_pred CCCCCCCCcHhcCcEE--cCCC-CcccHHHHHHHHhH-----CcCcCCCCCCC
Confidence 3679999866555444 5799 99999999999853 13579999873
No 123
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=71.51 E-value=2.1 Score=36.36 Aligned_cols=40 Identities=28% Similarity=0.669 Sum_probs=28.8
Q ss_pred CCcccccccCCCCceEecCcCCCCc-ccHhHHhhhCCCCChhhhhccCCCCCCc
Q 002333 201 RIKCHQCMKSERKYVVPCGKCRTKV-YCIQCIKQWYPKMSELDVAEICPFCRRN 253 (935)
Q Consensus 201 ~~~CHQCrqk~~~~~v~C~~C~r~~-FC~~CL~~rY~e~~~edv~~~CP~CRg~ 253 (935)
...|--|...-...++ ..|+ .. ||..|+.+. ..||.||..
T Consensus 25 ~~~C~IC~~~~~~~~~--~pCg-H~~~C~~C~~~~----------~~CP~Cr~~ 65 (75)
T 2ecg_A 25 EKLCKICMDRNIAIVF--VPCG-HLVTCKQCAEAV----------DKCPMCYTV 65 (75)
T ss_dssp HHSCSSSCSSCCCBCC--SSSC-CCCBCHHHHHHC----------SBCTTTCCB
T ss_pred CCCCCcCCCCCCCEEE--ecCC-CHHHHHHHhhCC----------CCCccCCce
Confidence 3679999876554332 4688 66 999999642 589999973
No 124
>2vqa_A SLL1358 protein, MNCA; periplasmic binding protein, metal-binding protein, cupin, BI-cupin, oxalate decarboxylase; 2.95A {Synechocystis SP}
Probab=71.15 E-value=1.4 Score=47.34 Aligned_cols=55 Identities=16% Similarity=0.232 Sum_probs=36.1
Q ss_pred EEEeecCceeEecCCCccccccccccceecccccCccchHHHHHHHHHhhcCCchh
Q 002333 843 TFEQKLGEAVFIPAGCPHQVRNLKSCTKVAVDFVSPENVDECLRLTKEFRLLPKNH 898 (935)
Q Consensus 843 tf~Q~lGEAVFIPAGCPHQVRNLkSCIKVAlDFVSPEnV~eC~rLteEfR~Lp~~H 898 (935)
++.=..||+++||+|+||+++|.-+--=+.+-|++|.+... +.|+.=++.+|.+-
T Consensus 279 ~~~l~~GD~~~ip~~~~H~~~n~~~~~~~~l~~~~~~~~~~-~~~~~~~~~~~~~v 333 (361)
T 2vqa_A 279 VSRLQQGDVGYVPKGYGHAIRNSSQKPLDIVVVFNDGDYQS-IDLSTWLASNPSSV 333 (361)
T ss_dssp EEEECTTCEEEECTTCEEEEECCSSSCEEEEEEESSSSCCC-EEHHHHHHTSCHHH
T ss_pred EEEECCCCEEEECCCCeEEeEECCCCCEEEEEEECCCCcce-eeHHHHhhhCCHHH
Confidence 56667899999999999999998653334455555554322 22344566676544
No 125
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=71.10 E-value=2.5 Score=38.38 Aligned_cols=48 Identities=27% Similarity=0.735 Sum_probs=32.5
Q ss_pred CCCCcccccccCCC-----CceEecCcCCCCcccHhHHhhhCCCCChhhhhccCCCCCCc
Q 002333 199 LERIKCHQCMKSER-----KYVVPCGKCRTKVYCIQCIKQWYPKMSELDVAEICPFCRRN 253 (935)
Q Consensus 199 g~~~~CHQCrqk~~-----~~~v~C~~C~r~~FC~~CL~~rY~e~~~edv~~~CP~CRg~ 253 (935)
++...|--|...-. +.......|+ ..||..||.+|.. ....||.||..
T Consensus 70 ~~~~~C~iC~~~~~~~~~~~~~~~~~~Cg-H~fc~~Ci~~~~~------~~~~CP~Cr~~ 122 (133)
T 4ap4_A 70 SGTVSCPICMDGYSEIVQNGRLIVSTECG-HVFCSQCLRDSLK------NANTCPTCRKK 122 (133)
T ss_dssp SSSCBCTTTCCBHHHHHHTTCCEEEETTS-BEEEHHHHHHHHH------HCSBCTTTCCB
T ss_pred CCCCCCCCCCCccccccccCcceEeCCCC-ChhhHHHHHHHHH------cCCCCCCCCCc
Confidence 34466777764321 1223455788 8999999999963 34699999963
No 126
>3rns_A Cupin 2 conserved barrel domain protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MSE; 2.07A {Leptotrichia buccalis}
Probab=70.71 E-value=1.4 Score=44.73 Aligned_cols=56 Identities=11% Similarity=0.063 Sum_probs=40.0
Q ss_pred CcccCCcccCccccCHHHHHHHHHHhCccceEEEeecCceeEecCCCccccccccccceecc
Q 002333 812 EQVIHPIHDQCFYLSSEHKKKLKEEFGVEPWTFEQKLGEAVFIPAGCPHQVRNLKSCTKVAV 873 (935)
Q Consensus 812 ~~v~dPIHDQ~fYLt~ehk~rLkEEyGVEpWtf~Q~lGEAVFIPAGCPHQVRNLkSCIKVAl 873 (935)
....|| +++.+|+-.--- ++.|..=++.=..||.++||||.||-++|+..|+=+..
T Consensus 51 ~~h~h~-~~~~~~Vl~G~~-----~~~i~~~~~~l~~Gd~~~~p~~~~H~~~a~~~~~~l~i 106 (227)
T 3rns_A 51 TAEAML-GNRYYYCFNGNG-----EIFIENNKKTISNGDFLEITANHNYSIEARDNLKLIEI 106 (227)
T ss_dssp EECSCS-SCEEEEEEESEE-----EEEESSCEEEEETTEEEEECSSCCEEEEESSSEEEEEE
T ss_pred CccccC-CCEEEEEEeCEE-----EEEECCEEEEECCCCEEEECCCCCEEEEECCCcEEEEE
Confidence 344677 778777643221 23445556667789999999999999999998766544
No 127
>1rc6_A Hypothetical protein YLBA; structural genomics, NYSGXRC, SGX clone NAME 3174C1TCT3B1, T T1521, PSI, protein initiative; 2.60A {Escherichia coli} SCOP: b.82.1.11
Probab=70.53 E-value=1.3 Score=45.86 Aligned_cols=47 Identities=13% Similarity=0.171 Sum_probs=31.8
Q ss_pred CCcccCccccCHHHHHHHHHHhCccceEEEeecCceeEecCCCccccccccc
Q 002333 816 HPIHDQCFYLSSEHKKKLKEEFGVEPWTFEQKLGEAVFIPAGCPHQVRNLKS 867 (935)
Q Consensus 816 dPIHDQ~fYLt~ehk~rLkEEyGVEpWtf~Q~lGEAVFIPAGCPHQVRNLkS 867 (935)
|+-.++-+|+-.-.- ++.|..=++.=..||+||||+|+||+.+|.-.
T Consensus 197 H~~~~E~~~Vl~G~~-----~~~i~~~~~~l~~GD~i~~~~~~~H~~~n~g~ 243 (261)
T 1rc6_A 197 THVQEHGAYILSGQG-----VYNLDNNWIPVKKGDYIFMGAYSLQAGYGVGR 243 (261)
T ss_dssp EESSCEEEEEEESEE-----EEESSSCEEEEETTCEEEECSSEEEEEEEC--
T ss_pred CCCceEEEEEEEeEE-----EEEECCEEEEeCCCCEEEECCCCcEEeEeCCC
Confidence 444445556533221 24555667788899999999999999999854
No 128
>2wfp_A Mannose-6-phosphate isomerase; APO-structure, metal-binding; 1.67A {Salmonella typhimurium} PDB: 3h1w_A 3h1m_A 3h1y_A*
Probab=69.75 E-value=1.5 Score=48.95 Aligned_cols=15 Identities=47% Similarity=0.738 Sum_probs=14.3
Q ss_pred ecCceeEecCCCccc
Q 002333 847 KLGEAVFIPAGCPHQ 861 (935)
Q Consensus 847 ~lGEAVFIPAGCPHQ 861 (935)
++|||+|||||.||=
T Consensus 245 ~pGd~~fipAG~~HA 259 (394)
T 2wfp_A 245 NPGEAMFLFAETPHA 259 (394)
T ss_dssp CTTCEEEECTTCCEE
T ss_pred CCCCEEEcCCCCceE
Confidence 789999999999996
No 129
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=69.75 E-value=2.5 Score=36.87 Aligned_cols=49 Identities=24% Similarity=0.684 Sum_probs=32.9
Q ss_pred CCCcccccccCCC---CceEecCcCCCCcccHhHHhhhCCCCChhhhhccCCCCCCccc
Q 002333 200 ERIKCHQCMKSER---KYVVPCGKCRTKVYCIQCIKQWYPKMSELDVAEICPFCRRNCN 255 (935)
Q Consensus 200 ~~~~CHQCrqk~~---~~~v~C~~C~r~~FC~~CL~~rY~e~~~edv~~~CP~CRg~CN 255 (935)
+...|--|...-. -....| .|+ ..||..||.+...+ ....||.||..-.
T Consensus 10 ~~~~CpICle~~~~~d~~~~p~-~CG-H~fC~~Cl~~~~~~-----~~~~CP~CR~~~~ 61 (78)
T 1e4u_A 10 DPVECPLCMEPLEIDDINFFPC-TCG-YQICRFCWHRIRTD-----ENGLCPACRKPYP 61 (78)
T ss_dssp CCCBCTTTCCBCCTTTTTCCSS-TTS-CCCCHHHHHHHTTS-----SCSBCTTTCCBCS
T ss_pred cCCcCCccCccCcccccccccc-CCC-CCcCHHHHHHHHhc-----CCCCCCCCCCccC
Confidence 3467777876431 122334 589 89999999988642 3468999998543
No 130
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=69.07 E-value=1.5 Score=40.24 Aligned_cols=44 Identities=23% Similarity=0.578 Sum_probs=32.4
Q ss_pred CCcccccccCCCCceEecCcCCCCcccHhHHhhhCCCCChhhhhccCCCCCC
Q 002333 201 RIKCHQCMKSERKYVVPCGKCRTKVYCIQCIKQWYPKMSELDVAEICPFCRR 252 (935)
Q Consensus 201 ~~~CHQCrqk~~~~~v~C~~C~r~~FC~~CL~~rY~e~~~edv~~~CP~CRg 252 (935)
...|--|...-...++ ..|+ ..||..||..|... -...||.||.
T Consensus 18 ~~~C~IC~~~~~~p~~--~~Cg-H~fC~~Ci~~~~~~-----~~~~CP~Cr~ 61 (118)
T 3hct_A 18 KYECPICLMALREAVQ--TPCG-HRFCKACIIKSIRD-----AGHKCPVDNE 61 (118)
T ss_dssp GGBCTTTCSBCSSEEE--CTTS-CEEEHHHHHHHHHH-----HCSBCTTTCC
T ss_pred CCCCCcCChhhcCeEE--CCcC-ChhhHHHHHHHHhh-----CCCCCCCCCC
Confidence 3688889866554443 3699 99999999999742 1238999985
No 131
>1wfl_A Zinc finger protein 216; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.80.1.1
Probab=68.98 E-value=4 Score=36.18 Aligned_cols=33 Identities=21% Similarity=0.564 Sum_probs=26.2
Q ss_pred CCcccccccCCCCceEecCcCCCCcccHhHHhhhCCCC
Q 002333 201 RIKCHQCMKSERKYVVPCGKCRTKVYCIQCIKQWYPKM 238 (935)
Q Consensus 201 ~~~CHQCrqk~~~~~v~C~~C~r~~FC~~CL~~rY~e~ 238 (935)
..+|..|+++---....|+ |+ ..||. .-||++.
T Consensus 25 ~nRC~~CrKkvgL~gf~Cr-Cg-~~FCs---~HRy~e~ 57 (74)
T 1wfl_A 25 KNRCFMCRKKVGLTGFDCR-CG-NLFCG---LHRYSDK 57 (74)
T ss_dssp TTBCSSSCCBCGGGCEECT-TS-CEECS---SSCSTTT
T ss_pred CCcChhhCCcccccCeecC-CC-CEech---hcCCCcc
Confidence 4789999998543458999 99 88975 7889875
No 132
>2pyt_A Ethanolamine utilization protein EUTQ; structural genomics, joint center for structural genomics, J protein structure initiative; 1.90A {Salmonella typhimurium LT2} SCOP: b.82.1.24
Probab=68.98 E-value=2.3 Score=40.35 Aligned_cols=35 Identities=29% Similarity=0.323 Sum_probs=28.2
Q ss_pred ccceEEEeecCceeEecCCCccccccccccceecc
Q 002333 839 VEPWTFEQKLGEAVFIPAGCPHQVRNLKSCTKVAV 873 (935)
Q Consensus 839 VEpWtf~Q~lGEAVFIPAGCPHQVRNLkSCIKVAl 873 (935)
+..=++.=+.||+++||+|.||..+|...+.++.+
T Consensus 90 ~~g~~~~l~~GD~i~~p~g~~h~~~~~~~~~~l~v 124 (133)
T 2pyt_A 90 HEGETMIAKAGDVMFIPKGSSIEFGTPTSVRFLYV 124 (133)
T ss_dssp ETTEEEEEETTCEEEECTTCEEEEEEEEEEEEEEE
T ss_pred ECCEEEEECCCcEEEECCCCEEEEEeCCCEEEEEE
Confidence 34456677899999999999999999877766554
No 133
>1wfp_A Zinc finger (AN1-like) family protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: g.80.1.1
Probab=68.85 E-value=5.1 Score=35.49 Aligned_cols=34 Identities=24% Similarity=0.641 Sum_probs=27.0
Q ss_pred CCCcccccccCCCCceEecCcCCCCcccHhHHhhhCCCC
Q 002333 200 ERIKCHQCMKSERKYVVPCGKCRTKVYCIQCIKQWYPKM 238 (935)
Q Consensus 200 ~~~~CHQCrqk~~~~~v~C~~C~r~~FC~~CL~~rY~e~ 238 (935)
...+|+.|+++.--....| .|+ ..||. .-||++.
T Consensus 24 ~~~RC~~C~kkvgL~~f~C-rCg-~~FCs---~HRy~e~ 57 (74)
T 1wfp_A 24 TATRCLSCNKKVGVTGFKC-RCG-STFCG---THRYPES 57 (74)
T ss_dssp CCCBCSSSCCBCTTTCEEC-TTS-CEECT---TTCSTTT
T ss_pred cCccchhhcCcccccceEe-ccC-CEecc---ccCCCcC
Confidence 4478999999875456899 699 88975 6788875
No 134
>1y3t_A Hypothetical protein YXAG; BI cupin, dioxygenase, oxidoreductase; 2.40A {Bacillus subtilis} SCOP: b.82.1.5 PDB: 2h0v_A*
Probab=68.81 E-value=2 Score=45.23 Aligned_cols=48 Identities=23% Similarity=0.281 Sum_probs=35.0
Q ss_pred hCccceEEEeecCceeEecCCCccccccccccceecccccCccchHHHH
Q 002333 837 FGVEPWTFEQKLGEAVFIPAGCPHQVRNLKSCTKVAVDFVSPENVDECL 885 (935)
Q Consensus 837 yGVEpWtf~Q~lGEAVFIPAGCPHQVRNLkSCIKVAlDFVSPEnV~eC~ 885 (935)
+.|..-++.=..||.|+||+|.||..+|...- -..+.+++|....+-+
T Consensus 80 ~~~~~~~~~l~~Gd~~~~p~~~~H~~~n~~~~-~~~~~~~~p~~~~~~~ 127 (337)
T 1y3t_A 80 LTLDGERYLLISGDYANIPAGTPHSYRMQSHR-TRLVSYTMKGNVAHLY 127 (337)
T ss_dssp EEETTEEEEECTTCEEEECTTCCEEEEECSTT-EEEEEEEETTSSTHHH
T ss_pred EEECCEEEEECCCCEEEECCCCcEEEEECCCC-eEEEEEECCCCHHHHH
Confidence 33455667788999999999999999998762 2344556676666544
No 135
>2l5u_A Chromodomain-helicase-DNA-binding protein 4; CHD4, MI2B, MI2-beta, PHD, protein binding, peptide binding metal binding protein; NMR {Homo sapiens}
Probab=68.41 E-value=3.1 Score=34.75 Aligned_cols=48 Identities=21% Similarity=0.623 Sum_probs=36.9
Q ss_pred CCCcccccccCCCCceEecCcCCCCcccHhHHhhhCCCCChhhhhccCCCCCC
Q 002333 200 ERIKCHQCMKSERKYVVPCGKCRTKVYCIQCIKQWYPKMSELDVAEICPFCRR 252 (935)
Q Consensus 200 ~~~~CHQCrqk~~~~~v~C~~C~r~~FC~~CL~~rY~e~~~edv~~~CP~CRg 252 (935)
+...|..|++. +.++.|-.|. ..|=..||.--....+ +-.|.||.|..
T Consensus 10 ~~~~C~vC~~~--g~ll~CD~C~-~~fH~~Cl~p~l~~~p--~g~W~C~~C~~ 57 (61)
T 2l5u_A 10 HQDYCEVCQQG--GEIILCDTCP-RAYHMVCLDPDMEKAP--EGKWSCPHCEK 57 (61)
T ss_dssp CCSSCTTTSCC--SSEEECSSSS-CEEEHHHHCTTCCSCC--CSSCCCTTGGG
T ss_pred CCCCCccCCCC--CcEEECCCCC-hhhhhhccCCCCCCCC--CCceECccccc
Confidence 45789999875 5799999999 6899999986443332 34799999964
No 136
>3h7j_A Bacilysin biosynthesis protein BACB; YWFC, bacilysin synthesis, anticapsin synthesis, BI-Cu double stranded beta helix, antibiotic biosynthesis; HET: PPY; 1.87A {Bacillus subtilis} PDB: 3h7y_A* 3h9a_A*
Probab=68.33 E-value=2 Score=44.07 Aligned_cols=48 Identities=23% Similarity=0.147 Sum_probs=33.9
Q ss_pred ccCCcccCccccCHHHHHHHHHHhCccceEEEeecCceeE-ecCCCccccccccc
Q 002333 814 VIHPIHDQCFYLSSEHKKKLKEEFGVEPWTFEQKLGEAVF-IPAGCPHQVRNLKS 867 (935)
Q Consensus 814 v~dPIHDQ~fYLt~ehk~rLkEEyGVEpWtf~Q~lGEAVF-IPAGCPHQVRNLkS 867 (935)
..|| +.|-+|+-.--- ++-|..=++.=..||+|| ||+|.||+++|..+
T Consensus 50 H~H~-~~e~~~Vl~G~~-----~~~~~~~~~~l~~Gd~i~~ip~~~~H~~~n~~~ 98 (243)
T 3h7j_A 50 HQHK-EVQIGMVVSGEL-----MMTVGDVTRKMTALESAYIAPPHVPHGARNDTD 98 (243)
T ss_dssp ECCS-SEEEEEEEESEE-----EEEETTEEEEEETTTCEEEECTTCCEEEEECSS
T ss_pred EECC-CcEEEEEEEeEE-----EEEECCEEEEECCCCEEEEcCCCCcEeeEeCCC
Confidence 3566 667666643322 233445566678999997 99999999999877
No 137
>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=67.90 E-value=5.2 Score=33.76 Aligned_cols=41 Identities=29% Similarity=0.766 Sum_probs=29.5
Q ss_pred CCCcccccccCCCCceEecCcCCCCc-ccHhHHhhhCCCCChhhhhccCCCCCCc
Q 002333 200 ERIKCHQCMKSERKYVVPCGKCRTKV-YCIQCIKQWYPKMSELDVAEICPFCRRN 253 (935)
Q Consensus 200 ~~~~CHQCrqk~~~~~v~C~~C~r~~-FC~~CL~~rY~e~~~edv~~~CP~CRg~ 253 (935)
+...|--|.......+. .-|+ .. ||..|+.+ .+.||.||..
T Consensus 14 ~~~~C~IC~~~~~~~v~--~pCg-H~~~C~~C~~~----------~~~CP~CR~~ 55 (68)
T 2ea5_A 14 NSKDCVVCQNGTVNWVL--LPCR-HTCLCDGCVKY----------FQQCPMCRQF 55 (68)
T ss_dssp CSSCCSSSSSSCCCCEE--TTTT-BCCSCTTHHHH----------CSSCTTTCCC
T ss_pred CCCCCCCcCcCCCCEEE--ECCC-ChhhhHHHHhc----------CCCCCCCCcc
Confidence 44789999887664332 3477 54 99999984 2689999973
No 138
>1pmi_A PMI, phosphomannose isomerase; aldose-ketose isomerase; 1.70A {Candida albicans} SCOP: b.82.1.3
Probab=67.53 E-value=1.8 Score=49.14 Aligned_cols=16 Identities=44% Similarity=0.675 Sum_probs=14.6
Q ss_pred eecCceeEecCCCccc
Q 002333 846 QKLGEAVFIPAGCPHQ 861 (935)
Q Consensus 846 Q~lGEAVFIPAGCPHQ 861 (935)
=++|||+|||||.||=
T Consensus 270 L~pGea~flpAg~~HA 285 (440)
T 1pmi_A 270 LNKGEAMFLQAKDPHA 285 (440)
T ss_dssp ECTTCEEEECTTCCEE
T ss_pred cCCCCEEecCCCCccc
Confidence 4689999999999996
No 139
>1sef_A Conserved hypothetical protein; structural genomics, nysgxrc target T1582, PSI, protein STRU initiative; 2.05A {Enterococcus faecalis} SCOP: b.82.1.11
Probab=67.28 E-value=1.9 Score=45.06 Aligned_cols=31 Identities=13% Similarity=0.314 Sum_probs=26.2
Q ss_pred hCccceEEEeecCceeEecCCCccccccccc
Q 002333 837 FGVEPWTFEQKLGEAVFIPAGCPHQVRNLKS 867 (935)
Q Consensus 837 yGVEpWtf~Q~lGEAVFIPAGCPHQVRNLkS 867 (935)
+-|..-++.=..||+|+||||+||+.+|.-.
T Consensus 216 ~~i~~~~~~l~~GD~i~i~~~~~H~~~n~~~ 246 (274)
T 1sef_A 216 YNLDNEWYPVEKGDYIFMSAYVPQAAYAVGR 246 (274)
T ss_dssp EEETTEEEEEETTCEEEECTTCCEEEEEECS
T ss_pred EEECCEEEEECCCCEEEECCCCCEEEEeCCC
Confidence 4555667788999999999999999999755
No 140
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=67.08 E-value=2.4 Score=34.18 Aligned_cols=42 Identities=21% Similarity=0.612 Sum_probs=29.6
Q ss_pred CCCcccccccCCCCceEecCcCCCCcccHhHHhhhCCCCChhhhhccCCCCCCc
Q 002333 200 ERIKCHQCMKSERKYVVPCGKCRTKVYCIQCIKQWYPKMSELDVAEICPFCRRN 253 (935)
Q Consensus 200 ~~~~CHQCrqk~~~~~v~C~~C~r~~FC~~CL~~rY~e~~~edv~~~CP~CRg~ 253 (935)
+..+|--|...-...+ -..|+ ..||..||..| ...||.||..
T Consensus 5 ~~~~C~IC~~~~~~p~--~l~Cg-H~fC~~Ci~~~---------~~~CP~Cr~~ 46 (56)
T 1bor_A 5 QFLRCQQCQAEAKCPK--LLPCL-HTLCSGCLEAS---------GMQCPICQAP 46 (56)
T ss_dssp CCSSCSSSCSSCBCCS--CSTTS-CCSBTTTCSSS---------SSSCSSCCSS
T ss_pred cCCCceEeCCccCCeE--EcCCC-CcccHHHHccC---------CCCCCcCCcE
Confidence 4467888876544322 23588 89999999872 4579999874
No 141
>1juh_A Quercetin 2,3-dioxygenase; cupin, glycoprotein, beta sandwich, oxidoreduct; HET: NAG BMA MAN; 1.60A {Aspergillus japonicus} SCOP: b.82.1.5 PDB: 1gqh_A* 1h1i_A* 1h1m_A* 1gqg_A*
Probab=66.80 E-value=1.9 Score=46.99 Aligned_cols=70 Identities=16% Similarity=0.171 Sum_probs=50.0
Q ss_pred ccCCcccCccccCHHHHHHHHHHhCccc-----eEEEeecCceeEecCCCccccccccccceecccccCccchHHHHHHH
Q 002333 814 VIHPIHDQCFYLSSEHKKKLKEEFGVEP-----WTFEQKLGEAVFIPAGCPHQVRNLKSCTKVAVDFVSPENVDECLRLT 888 (935)
Q Consensus 814 v~dPIHDQ~fYLt~ehk~rLkEEyGVEp-----Wtf~Q~lGEAVFIPAGCPHQVRNLkSCIKVAlDFVSPEnV~eC~rLt 888 (935)
..|+-.++.||+-.-.- ++-|.. -++.=..||.|+||+|.||..+|.-.-. ..+-.++|....+-++-.
T Consensus 66 H~H~~~~E~~~Vl~G~~-----~~~v~~~~g~~~~~~L~~GD~v~ip~g~~H~~~n~~~~~-~~l~v~~p~~~~~~f~~l 139 (350)
T 1juh_A 66 HIHQKHYENFYCNKGSF-----QLWAQSGNETQQTRVLSSGDYGSVPRNVTHTFQIQDPDT-EMTGVIVPGGFEDLFYYL 139 (350)
T ss_dssp EECSSCEEEEEEEESEE-----EEEEEETTSCCEEEEEETTCEEEECTTEEEEEEECSTTE-EEEEEEESSCTTHHHHHH
T ss_pred ccCCCceEEEEEEEEEE-----EEEECCcCCceEEEEECCCCEEEECCCCcEEEEeCCCCC-EEEEEEcCccHHHHHHHh
Confidence 35666667777643322 244555 7788899999999999999999986654 667788888876665543
Q ss_pred H
Q 002333 889 K 889 (935)
Q Consensus 889 e 889 (935)
.
T Consensus 140 ~ 140 (350)
T 1juh_A 140 G 140 (350)
T ss_dssp S
T ss_pred c
Confidence 3
No 142
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2
Probab=66.60 E-value=10 Score=34.25 Aligned_cols=45 Identities=13% Similarity=-0.065 Sum_probs=34.5
Q ss_pred CCcccccccCCCCceEecCcCCCCcccHhHHhhhCCCCChhhhhccCCCCCCc
Q 002333 201 RIKCHQCMKSERKYVVPCGKCRTKVYCIQCIKQWYPKMSELDVAEICPFCRRN 253 (935)
Q Consensus 201 ~~~CHQCrqk~~~~~v~C~~C~r~~FC~~CL~~rY~e~~~edv~~~CP~CRg~ 253 (935)
...|--|..--.+.++ ..|+...||..||..|..+ ...||+|+..
T Consensus 22 ~~~CpI~~~~m~dPV~--~~cG~htf~r~cI~~~l~~------~~~cP~~~~~ 66 (98)
T 1wgm_A 22 EFLDPIMSTLMCDPVV--LPSSRVTVDRSTIARHLLS------DQTDPFNRSP 66 (98)
T ss_dssp TTBCTTTCSBCSSEEE--CTTTCCEEEHHHHHHHTTT------SCBCTTTCSB
T ss_pred hcCCcCccccccCCeE--CCCCCeEECHHHHHHHHHh------CCCCCCCCCC
Confidence 4788888877666665 3577678999999999864 3589999863
No 143
>1f62_A Transcription factor WSTF; Zn-finger; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=66.20 E-value=4.9 Score=31.99 Aligned_cols=47 Identities=23% Similarity=0.678 Sum_probs=35.2
Q ss_pred cccccccCC-CCceEecCcCCCCcccHhHHhhhCCCCChhhhhccCCCCCC
Q 002333 203 KCHQCMKSE-RKYVVPCGKCRTKVYCIQCIKQWYPKMSELDVAEICPFCRR 252 (935)
Q Consensus 203 ~CHQCrqk~-~~~~v~C~~C~r~~FC~~CL~~rY~e~~~edv~~~CP~CRg 252 (935)
.|..|++.. .+.++.|-.|. ..|=..|+.--..+++ +-.|.||.|+.
T Consensus 2 ~C~vC~~~~~~~~ll~Cd~C~-~~~H~~Cl~p~l~~~P--~g~W~C~~C~~ 49 (51)
T 1f62_A 2 RCKVCRKKGEDDKLILCDECN-KAFHLFCLRPALYEVP--DGEWQCPACQP 49 (51)
T ss_dssp CCTTTCCSSCCSCCEECTTTC-CEECHHHHCTTCCSCC--SSCCSCTTTSC
T ss_pred CCCCCCCCCCCCCEEECCCCC-hhhCcccCCCCcCCCC--CCcEECcCccc
Confidence 588898875 56799999999 6788889864333332 24799999975
No 144
>4e2q_A Ureidoglycine aminohydrolase; BI-cupin, manganese binding, endoplasmic RET hydrolase; 2.50A {Arabidopsis thaliana} PDB: 4e2s_A
Probab=65.90 E-value=2 Score=45.85 Aligned_cols=29 Identities=10% Similarity=0.264 Sum_probs=22.7
Q ss_pred hCccceEEEeecCceeEecCCCccccccc
Q 002333 837 FGVEPWTFEQKLGEAVFIPAGCPHQVRNL 865 (935)
Q Consensus 837 yGVEpWtf~Q~lGEAVFIPAGCPHQVRNL 865 (935)
|-+..=.+.=+.||++|||+||||+..|.
T Consensus 220 y~l~~~~~~V~~GD~i~~~~~~~h~~~n~ 248 (266)
T 4e2q_A 220 YRLGDNWYPVQAGDVIWMAPFVPQWYAAL 248 (266)
T ss_dssp EEETTEEEEEETTCEEEECTTCCEEEEEE
T ss_pred EEECCEEEEecCCCEEEECCCCcEEEEeC
Confidence 34444455567899999999999999986
No 145
>1j58_A YVRK protein; cupin, decarboxyklase, oxalate, manganese, formate, metal BI protein; 1.75A {Bacillus subtilis} SCOP: b.82.1.2 PDB: 1l3j_A 1uw8_A 2uyb_A 2uy9_A 2uy8_A 2v09_A 2uya_A 3s0m_A
Probab=65.77 E-value=2.1 Score=46.49 Aligned_cols=27 Identities=26% Similarity=0.487 Sum_probs=23.0
Q ss_pred ceEEEeecCceeEecCCCccccccccc
Q 002333 841 PWTFEQKLGEAVFIPAGCPHQVRNLKS 867 (935)
Q Consensus 841 pWtf~Q~lGEAVFIPAGCPHQVRNLkS 867 (935)
.-++.=..||+++||+|+||+++|.-+
T Consensus 300 ~~~~~l~~GD~~~ip~~~~H~~~n~~~ 326 (385)
T 1j58_A 300 ARTFNYQAGDVGYVPFAMGHYVENIGD 326 (385)
T ss_dssp EEEEEEESSCEEEECTTCBEEEEECSS
T ss_pred EEEEEEcCCCEEEECCCCeEEEEECCC
Confidence 345667799999999999999999854
No 146
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=65.36 E-value=4.8 Score=36.92 Aligned_cols=59 Identities=19% Similarity=0.431 Sum_probs=43.7
Q ss_pred cCCCCcccccccCCC-CceEecCcCCCCcccHhHHhhhCCCCChhhhhccCCCCCCcccCcccccc
Q 002333 198 ELERIKCHQCMKSER-KYVVPCGKCRTKVYCIQCIKQWYPKMSELDVAEICPFCRRNCNCSVCLHT 262 (935)
Q Consensus 198 ~g~~~~CHQCrqk~~-~~~v~C~~C~r~~FC~~CL~~rY~e~~~edv~~~CP~CRg~CNCs~Clr~ 262 (935)
.++...|..|..... ..++.|..|. ..|=..||......+ ....|.||.|. .|.+|.+.
T Consensus 4 ~~~~~~C~~C~~~g~~~~ll~C~~C~-~~~H~~Cl~~~~~~~--~~~~W~C~~C~---~C~~C~~~ 63 (111)
T 2ysm_A 4 GSSGANCAVCDSPGDLLDQFFCTTCG-QHYHGMCLDIAVTPL--KRAGWQCPECK---VCQNCKQS 63 (111)
T ss_dssp CCCCSCBTTTCCCCCTTTSEECSSSC-CEECTTTTTCCCCTT--TSTTCCCTTTC---CCTTTCCC
T ss_pred CCCCCCCcCCCCCCCCcCCeECCCCC-CCcChHHhCCccccc--cccCccCCcCC---cccccCcc
Confidence 445688999988763 5569999999 778888988655322 24579999987 57777654
No 147
>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A
Probab=65.23 E-value=4.7 Score=34.96 Aligned_cols=39 Identities=28% Similarity=0.735 Sum_probs=29.1
Q ss_pred CcccccccCCCCceEecCcCCCCc-ccHhHHhhhCCCCChhhhhccCCCCCCc
Q 002333 202 IKCHQCMKSERKYVVPCGKCRTKV-YCIQCIKQWYPKMSELDVAEICPFCRRN 253 (935)
Q Consensus 202 ~~CHQCrqk~~~~~v~C~~C~r~~-FC~~CL~~rY~e~~~edv~~~CP~CRg~ 253 (935)
..|--|.......+. ..|+ .. ||..|+.++ +.||.||..
T Consensus 19 ~~C~IC~~~~~~~v~--~pCg-H~~~C~~C~~~~----------~~CP~Cr~~ 58 (79)
T 2yho_A 19 MLCMVCCEEEINSTF--CPCG-HTVCCESCAAQL----------QSCPVCRSR 58 (79)
T ss_dssp TBCTTTSSSBCCEEE--ETTC-BCCBCHHHHTTC----------SBCTTTCCB
T ss_pred CEeEEeCcccCcEEE--ECCC-CHHHHHHHHHhc----------CcCCCCCch
Confidence 679999877654433 3588 55 999999865 399999984
No 148
>4diq_A Lysine-specific demethylase NO66; structural genomics, structural genomics consortium, SGC, HI demethylase, oxidoreductase; HET: PD2; 2.40A {Homo sapiens}
Probab=65.02 E-value=3.7 Score=47.44 Aligned_cols=42 Identities=14% Similarity=0.239 Sum_probs=34.6
Q ss_pred hCccceEEEeecCceeEecCCCccccccccc--cceecccccCc
Q 002333 837 FGVEPWTFEQKLGEAVFIPAGCPHQVRNLKS--CTKVAVDFVSP 878 (935)
Q Consensus 837 yGVEpWtf~Q~lGEAVFIPAGCPHQVRNLkS--CIKVAlDFVSP 878 (935)
.+-..+.++-.+||..|||.|.+|||+++-. +|.++.-+-.|
T Consensus 223 ~~~p~~e~~L~pGDvLYiP~g~~H~~~s~~~~~SlhlTi~~~~~ 266 (489)
T 4diq_A 223 LGEPVLQTVLEPGDLLYFPRGFIHQAECQDGVHSLHLTLSTYQR 266 (489)
T ss_dssp CCCCSEEEEECTTCEEEECTTCEEEEEBCSSCCEEEEEEEECTT
T ss_pred ccCcceEEEECCCCEEEECCCCceEEEecCCCceEEEeecccCc
Confidence 3567789999999999999999999999954 67777666544
No 149
>2vpv_A Protein MIF2, MIF2P; nucleus, mitosis, centromere, cell cycle, DNA-binding, kinetochore, cell division, phosphoprotein, jelly-roll fold; 2.7A {Saccharomyces cerevisiae}
Probab=64.68 E-value=3.2 Score=41.41 Aligned_cols=29 Identities=24% Similarity=0.115 Sum_probs=24.7
Q ss_pred ccceEEEeecCceeEecCCCccccccccc
Q 002333 839 VEPWTFEQKLGEAVFIPAGCPHQVRNLKS 867 (935)
Q Consensus 839 VEpWtf~Q~lGEAVFIPAGCPHQVRNLkS 867 (935)
|..=+|.=..||.++||||.||..+|.-+
T Consensus 125 l~g~~~~L~~Gds~~iP~g~~H~~~N~~d 153 (166)
T 2vpv_A 125 VCKNKFLSVKGSTFQIPAFNEYAIANRGN 153 (166)
T ss_dssp ETTEEEEEETTCEEEECTTCEEEEEECSS
T ss_pred ECCEEEEEcCCCEEEECCCCCEEEEECCC
Confidence 44457777899999999999999999765
No 150
>1mm2_A MI2-beta; PHD, zinc finger, protein scaffold, DNA binding protein; NMR {Homo sapiens} SCOP: g.50.1.2 PDB: 2l75_A* 1mm3_A
Probab=64.64 E-value=2.8 Score=35.07 Aligned_cols=49 Identities=22% Similarity=0.587 Sum_probs=36.0
Q ss_pred CCCCcccccccCCCCceEecCcCCCCcccHhHHhhhCCCCChhhhhccCCCCCC
Q 002333 199 LERIKCHQCMKSERKYVVPCGKCRTKVYCIQCIKQWYPKMSELDVAEICPFCRR 252 (935)
Q Consensus 199 g~~~~CHQCrqk~~~~~v~C~~C~r~~FC~~CL~~rY~e~~~edv~~~CP~CRg 252 (935)
++...|..|++. +.++.|-.|. ..|=..||..-..++. +-.|.||.|+.
T Consensus 7 ~~~~~C~vC~~~--g~ll~Cd~C~-~~fH~~Cl~ppl~~~p--~g~W~C~~C~~ 55 (61)
T 1mm2_A 7 HHMEFCRVCKDG--GELLCCDTCP-SSYHIHCLNPPLPEIP--NGEWLCPRCTC 55 (61)
T ss_dssp SSCSSCTTTCCC--SSCBCCSSSC-CCBCSSSSSSCCSSCC--SSCCCCTTTTT
T ss_pred CCCCcCCCCCCC--CCEEEcCCCC-HHHcccccCCCcCcCC--CCccCChhhcC
Confidence 455789999864 5699999999 6788888875433332 34799999964
No 151
>2d40_A Z3393, putative gentisate 1,2-dioxygenase; gentisic acid, bicupin, tetramer, montreal- bacterial structural genomics initiative, BSGI; 2.41A {Escherichia coli} SCOP: b.82.1.23
Probab=64.46 E-value=3.2 Score=45.47 Aligned_cols=40 Identities=15% Similarity=0.027 Sum_probs=30.4
Q ss_pred ccceEEEeecCceeEecCCCccccccccccceecccccCc
Q 002333 839 VEPWTFEQKLGEAVFIPAGCPHQVRNLKSCTKVAVDFVSP 878 (935)
Q Consensus 839 VEpWtf~Q~lGEAVFIPAGCPHQVRNLkSCIKVAlDFVSP 878 (935)
|.+-++.=..||+|+||+|.+|+.+|.-+---+-++|..|
T Consensus 136 v~g~~~~l~~GD~~~iP~g~~H~~~n~~~~~~~~l~v~d~ 175 (354)
T 2d40_A 136 VDGERTPMNEGDFILTPQWRWHDHGNPGDEPVIWLDGLDL 175 (354)
T ss_dssp ETTEEEECCTTCEEEECTTSCEEEECCSSSCEEEEEEECH
T ss_pred ECCEEEEEcCCCEEEECCCCcEEeEeCCCCCEEEEEEECc
Confidence 4555788889999999999999999985532244566654
No 152
>1fp0_A KAP-1 corepressor; PHD domain, C3HC4 type zinc binding domain, -structure, transcription; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=64.38 E-value=3.7 Score=37.25 Aligned_cols=51 Identities=18% Similarity=0.450 Sum_probs=38.5
Q ss_pred ccCCCCcccccccCCCCceEecCcCCCCcccHhHHhhhCCCCChhhhhccCCCCCC
Q 002333 197 KELERIKCHQCMKSERKYVVPCGKCRTKVYCIQCIKQWYPKMSELDVAEICPFCRR 252 (935)
Q Consensus 197 ~~g~~~~CHQCrqk~~~~~v~C~~C~r~~FC~~CL~~rY~e~~~edv~~~CP~CRg 252 (935)
..++...|..|++.. .++.|-.|. ..|=..||..-..+++ +-.|.||.|+.
T Consensus 21 ~d~n~~~C~vC~~~g--~LL~CD~C~-~~fH~~Cl~PpL~~~P--~g~W~C~~C~~ 71 (88)
T 1fp0_A 21 LDDSATICRVCQKPG--DLVMCNQCE-FCFHLDCHLPALQDVP--GEEWSCSLCHV 71 (88)
T ss_dssp SSSSSSCCSSSCSSS--CCEECTTSS-CEECTTSSSTTCCCCC--SSSCCCCSCCC
T ss_pred cCCCCCcCcCcCCCC--CEEECCCCC-CceecccCCCCCCCCc--CCCcCCccccC
Confidence 445668899999764 599999999 7788888865444433 24699999975
No 153
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=64.31 E-value=3.3 Score=37.59 Aligned_cols=47 Identities=26% Similarity=0.765 Sum_probs=32.5
Q ss_pred CCCcccccccCCC-----CceEecCcCCCCcccHhHHhhhCCCCChhhhhccCCCCCCc
Q 002333 200 ERIKCHQCMKSER-----KYVVPCGKCRTKVYCIQCIKQWYPKMSELDVAEICPFCRRN 253 (935)
Q Consensus 200 ~~~~CHQCrqk~~-----~~~v~C~~C~r~~FC~~CL~~rY~e~~~edv~~~CP~CRg~ 253 (935)
+...|--|...-. +..+.-..|+ ..||..||.+|.... ..||.||..
T Consensus 6 ~~~~C~IC~~~~~~~~~~~~~~~~~~Cg-H~fc~~Ci~~~~~~~------~~CP~Cr~~ 57 (133)
T 4ap4_A 6 GTVSCPICMDGYSEIVQNGRLIVSTECG-HVFCSQCLRDSLKNA------NTCPTCRKK 57 (133)
T ss_dssp CSCBCTTTCCBHHHHHHTTCCEEEETTC-CEEEHHHHHHHHTTC------SBCTTTCCB
T ss_pred CCCCCcccChhhhCccccccCeEecCCC-ChhhHHHHHHHHHhC------CCCCCCCCc
Confidence 4467888875422 1223445799 899999999998643 389998873
No 154
>2xdv_A MYC-induced nuclear antigen; ribosome biogenesis, nuclear protein; HET: OGA; 2.57A {Homo sapiens}
Probab=63.91 E-value=3.8 Score=46.50 Aligned_cols=30 Identities=27% Similarity=0.440 Sum_probs=27.4
Q ss_pred hCccceEEEeecCceeEecCCCcccccccc
Q 002333 837 FGVEPWTFEQKLGEAVFIPAGCPHQVRNLK 866 (935)
Q Consensus 837 yGVEpWtf~Q~lGEAVFIPAGCPHQVRNLk 866 (935)
+|...+.++=.+||+.|||+|.+|+|+++-
T Consensus 194 ~~~~~~~~~L~pGD~LYiP~g~~H~~~s~~ 223 (442)
T 2xdv_A 194 IGRPVHEFMLKPGDLLYFPRGTIHQADTPA 223 (442)
T ss_dssp SCSCSEEEEECTTCEEEECTTCEEEEECCS
T ss_pred cCCcceEEEECCCcEEEECCCceEEEEecC
Confidence 566778999999999999999999999986
No 155
>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A
Probab=63.18 E-value=3.1 Score=34.58 Aligned_cols=46 Identities=24% Similarity=0.547 Sum_probs=32.7
Q ss_pred CCcccccccCCCCceEecCcCCCCc-ccHhHHhhhCCCCChhhhhccCCCCCCc
Q 002333 201 RIKCHQCMKSERKYVVPCGKCRTKV-YCIQCIKQWYPKMSELDVAEICPFCRRN 253 (935)
Q Consensus 201 ~~~CHQCrqk~~~~~v~C~~C~r~~-FC~~CL~~rY~e~~~edv~~~CP~CRg~ 253 (935)
...|--|.......++.-..|+ .. ||..|+.++.. ..+.||.||..
T Consensus 8 ~~~C~IC~~~~~~~~~~~~pCg-H~~~C~~C~~~~~~------~~~~CPiCR~~ 54 (64)
T 2vje_A 8 IEPCVICQGRPKNGCIVHGKTG-HLMACFTCAKKLKK------RNKPCPVCRQP 54 (64)
T ss_dssp GSCCTTTSSSCSCEEEEETTEE-EEEECHHHHHHHHH------TTCCCTTTCCC
T ss_pred cCCCCcCCCCCCCEEEECCCCC-ChhhHHHHHHHHHH------cCCcCCCcCcc
Confidence 3678899877765554323577 44 89999998763 24689999973
No 156
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=61.14 E-value=4 Score=37.77 Aligned_cols=50 Identities=22% Similarity=0.579 Sum_probs=37.0
Q ss_pred CCCcccccccCC--CCceEecCcCCCCcccHhHHhhhCCCCChhhhhccCCCCCC
Q 002333 200 ERIKCHQCMKSE--RKYVVPCGKCRTKVYCIQCIKQWYPKMSELDVAEICPFCRR 252 (935)
Q Consensus 200 ~~~~CHQCrqk~--~~~~v~C~~C~r~~FC~~CL~~rY~e~~~edv~~~CP~CRg 252 (935)
+-+.|+.|++.. .+.++.|..|. ..|=..||..-..+++. -.|.||.|+.
T Consensus 60 ~C~~C~vC~~~~~~~~~ll~Cd~C~-~~yH~~Cl~p~l~~~P~--~~W~C~~C~~ 111 (112)
T 3v43_A 60 ECKTCSSCRDQGKNADNMLFCDSCD-RGFHMECCDPPLTRMPK--GMWICQICRP 111 (112)
T ss_dssp TTCCBTTTCCCCCTTCCCEECTTTC-CEECGGGCSSCCSSCCS--SCCCCTTTSC
T ss_pred cCCccccccCcCCCccceEEcCCCC-CeeecccCCCCCCCCCC--CCeECCCCCC
Confidence 345788888753 35799999999 78889998755554433 3799999974
No 157
>1sq4_A GLXB, glyoxylate-induced protein; structural genomics, double beta barrel protein, PSI, protei structure initiative; 2.70A {Pseudomonas aeruginosa} SCOP: b.82.1.11
Probab=61.04 E-value=2.8 Score=44.27 Aligned_cols=31 Identities=26% Similarity=0.405 Sum_probs=25.4
Q ss_pred hCccceEEEeecCceeEecCCCccccccccc
Q 002333 837 FGVEPWTFEQKLGEAVFIPAGCPHQVRNLKS 867 (935)
Q Consensus 837 yGVEpWtf~Q~lGEAVFIPAGCPHQVRNLkS 867 (935)
+.|..=++.=..||+++||||.||+++|.-+
T Consensus 103 v~v~g~~~~L~~GD~i~ip~~~~H~~~N~g~ 133 (278)
T 1sq4_A 103 LTLQGQVHAMQPGGYAFIPPGADYKVRNTTG 133 (278)
T ss_dssp EEESSCEEEECTTEEEEECTTCCEEEECCSS
T ss_pred EEECCEEEEECCCCEEEECCCCcEEEEECCC
Confidence 3445557778899999999999999999843
No 158
>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B
Probab=59.65 E-value=4.4 Score=44.64 Aligned_cols=41 Identities=32% Similarity=0.757 Sum_probs=32.0
Q ss_pred CCCcccccccCCCCceEecCcCCCCc-ccHhHHhhhCCCCChhhhhccCCCCCCc
Q 002333 200 ERIKCHQCMKSERKYVVPCGKCRTKV-YCIQCIKQWYPKMSELDVAEICPFCRRN 253 (935)
Q Consensus 200 ~~~~CHQCrqk~~~~~v~C~~C~r~~-FC~~CL~~rY~e~~~edv~~~CP~CRg~ 253 (935)
+...|.-|...-...+.. .|+ .. ||..|+..+ ..||.||..
T Consensus 294 ~~~~C~IC~~~~~~~v~l--pCg-H~~fC~~C~~~~----------~~CP~CR~~ 335 (345)
T 3t6p_A 294 EERTCKVCMDKEVSVVFI--PCG-HLVVCQECAPSL----------RKCPICRGI 335 (345)
T ss_dssp TTCBCTTTSSSBCCEEEE--TTC-CEEECTTTGGGC----------SBCTTTCCB
T ss_pred CCCCCCccCCcCCceEEc--CCC-ChhHhHHHHhcC----------CcCCCCCCC
Confidence 348999999876644433 688 66 999999977 589999974
No 159
>3nw4_A Gentisate 1,2-dioxygenase; beta-barrel, oxidoreductase; HET: GTQ; 2.00A {Pseudaminobacter salicylatoxidans} PDB: 3nvc_A* 3nst_A* 3njz_A* 2phd_A* 3nkt_A* 3nl1_A* 4fag_A* 4fbf_A 4fah_A
Probab=59.41 E-value=4.2 Score=45.29 Aligned_cols=29 Identities=21% Similarity=0.229 Sum_probs=25.1
Q ss_pred ccceEEEeecCceeEecCCCccccccccc
Q 002333 839 VEPWTFEQKLGEAVFIPAGCPHQVRNLKS 867 (935)
Q Consensus 839 VEpWtf~Q~lGEAVFIPAGCPHQVRNLkS 867 (935)
|.+=++.=..||+|+||+|+.|++.|--+
T Consensus 139 vdG~~~~~~~GD~v~iP~g~~H~~~N~gd 167 (368)
T 3nw4_A 139 VNGDPVRMSRGDLLLTPGWCFHGHMNDTD 167 (368)
T ss_dssp ETTEEEEEETTCEEEECTTCCEEEEECSS
T ss_pred ECCEEEEEeCCCEEEECCCCcEEeEeCCC
Confidence 56668889999999999999999999643
No 160
>3bu7_A Gentisate 1,2-dioxygenase; cupin domain, oxidoreductase, plasmid; 2.80A {Silicibacter pomeroyi} SCOP: b.82.1.23
Probab=59.14 E-value=4.2 Score=45.67 Aligned_cols=29 Identities=21% Similarity=0.094 Sum_probs=25.8
Q ss_pred CccceEEEeecCceeEecCCCcccccccc
Q 002333 838 GVEPWTFEQKLGEAVFIPAGCPHQVRNLK 866 (935)
Q Consensus 838 GVEpWtf~Q~lGEAVFIPAGCPHQVRNLk 866 (935)
-|.+-+|.-..||+||||+|.+||+.|.-
T Consensus 328 ~V~ge~~~~~~GD~~~iP~g~~H~~~N~g 356 (394)
T 3bu7_A 328 IVGGKRFDWSEHDIFCVPAWTWHEHCNTQ 356 (394)
T ss_dssp EETTEEEEECTTCEEEECTTCCEEEEECC
T ss_pred EECCEEEEEeCCCEEEECCCCeEEeEeCC
Confidence 35677899999999999999999999974
No 161
>1sfn_A Conserved hypothetical protein; structural genomics, nysgxrc target T1583, PSI, protein STRU initiative; 2.46A {Deinococcus radiodurans} SCOP: b.82.1.11
Probab=58.90 E-value=3.3 Score=42.69 Aligned_cols=32 Identities=19% Similarity=0.393 Sum_probs=25.9
Q ss_pred HhCccceEEEeecCceeEecCCCccccccccc
Q 002333 836 EFGVEPWTFEQKLGEAVFIPAGCPHQVRNLKS 867 (935)
Q Consensus 836 EyGVEpWtf~Q~lGEAVFIPAGCPHQVRNLkS 867 (935)
+|-+..=++.=..||.+|+||||||+.+|.-.
T Consensus 198 ~~~~~~~~~~l~~GD~~~~~~~~pH~~~n~g~ 229 (246)
T 1sfn_A 198 LYKLEENYYPVTAGDIIWMGAHCPQWYGALGR 229 (246)
T ss_dssp EEEETTEEEEEETTCEEEECTTCCEEEEEESS
T ss_pred EEEECCEEEEcCCCCEEEECCCCCEEEEcCCC
Confidence 35556666677899999999999999999643
No 162
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=58.80 E-value=1.8 Score=41.17 Aligned_cols=36 Identities=22% Similarity=0.519 Sum_probs=29.7
Q ss_pred CCCcccccccCC--CCceEecCcCCCCcccHhHHhhhCC
Q 002333 200 ERIKCHQCMKSE--RKYVVPCGKCRTKVYCIQCIKQWYP 236 (935)
Q Consensus 200 ~~~~CHQCrqk~--~~~~v~C~~C~r~~FC~~CL~~rY~ 236 (935)
....|..|..+- ..+.-.|+.|+ ..||..|...+.+
T Consensus 68 ~~~~C~~C~~~Fs~~~RrHHCR~CG-~vfC~~Cs~~~~~ 105 (125)
T 1joc_A 68 EVQNCMACGKGFSVTVRRHHCRQCG-NIFCAECSAKNAL 105 (125)
T ss_dssp GCCBCTTTCCBCCSSSCCEECTTTC-CEECGGGSCEEEC
T ss_pred CCCCCcCcCCccccccccccCCCCC-eEEChHHhCCccc
Confidence 457899999875 35678999999 9999999988754
No 163
>2e6r_A Jumonji/ARID domain-containing protein 1D; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=58.51 E-value=2.1 Score=38.76 Aligned_cols=53 Identities=21% Similarity=0.525 Sum_probs=37.4
Q ss_pred ccCCCCcccccccCC-CCceEecCcCCCCcccHhHHhhhCCCCChhhhhccCCCCCC
Q 002333 197 KELERIKCHQCMKSE-RKYVVPCGKCRTKVYCIQCIKQWYPKMSELDVAEICPFCRR 252 (935)
Q Consensus 197 ~~g~~~~CHQCrqk~-~~~~v~C~~C~r~~FC~~CL~~rY~e~~~edv~~~CP~CRg 252 (935)
.-.+...|..|++.. ...++.|-.|. ..|=..||..-...++ .-.|.||.|+.
T Consensus 12 ~~~~~~~C~vC~~~~~~~~ll~CD~C~-~~~H~~Cl~Ppl~~~P--~g~W~C~~C~~ 65 (92)
T 2e6r_A 12 QFIDSYICQVCSRGDEDDKLLFCDGCD-DNYHIFCLLPPLPEIP--RGIWRCPKCIL 65 (92)
T ss_dssp CCCCCCCCSSSCCSGGGGGCEECTTTC-CEECSSSSSSCCSSCC--SSCCCCHHHHH
T ss_pred hccCCCCCccCCCcCCCCCEEEcCCCC-chhccccCCCCcccCC--CCCcCCccCcC
Confidence 445567899999887 46799999999 5677777763332322 23699999853
No 164
>1dgw_A Canavalin; duplicated swiss-roll beta barrels, loops with alpha helices merohedral/ hemihedral twinning, plant protein; 1.70A {Canavalia ensiformis} SCOP: b.82.1.2 PDB: 1dgr_A 1cau_A 1cav_A 1caw_A 1cax_A
Probab=58.39 E-value=4.5 Score=39.84 Aligned_cols=27 Identities=30% Similarity=0.395 Sum_probs=23.0
Q ss_pred ceEEEeecCceeEecCCCccccccccc
Q 002333 841 PWTFEQKLGEAVFIPAGCPHQVRNLKS 867 (935)
Q Consensus 841 pWtf~Q~lGEAVFIPAGCPHQVRNLkS 867 (935)
.-++.=..||+++||+|.||..+|.-+
T Consensus 82 ~~~~~l~~GDv~~~P~g~~H~~~N~g~ 108 (178)
T 1dgw_A 82 RDTYKLDQGDAIKIQAGTPFYLINPDN 108 (178)
T ss_dssp EEEEEEETTEEEEECTTCCEEEEECCS
T ss_pred cEEEEECCCCEEEECCCCeEEEEeCCC
Confidence 346677889999999999999999854
No 165
>2yql_A PHD finger protein 21A; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=57.86 E-value=1.7 Score=35.57 Aligned_cols=49 Identities=27% Similarity=0.605 Sum_probs=35.9
Q ss_pred CCCCcccccccCCCCceEecCcCCCCcccHhHHhhhCCCCChhhhhccCCCCCC
Q 002333 199 LERIKCHQCMKSERKYVVPCGKCRTKVYCIQCIKQWYPKMSELDVAEICPFCRR 252 (935)
Q Consensus 199 g~~~~CHQCrqk~~~~~v~C~~C~r~~FC~~CL~~rY~e~~~edv~~~CP~CRg 252 (935)
++...|..|++. +.++.|-.|. ..|=..||..-...++ .-.|.||.|..
T Consensus 7 ~~~~~C~vC~~~--g~ll~Cd~C~-~~~H~~Cl~ppl~~~p--~g~W~C~~C~~ 55 (56)
T 2yql_A 7 GHEDFCSVCRKS--GQLLMCDTCS-RVYHLDCLDPPLKTIP--KGMWICPRCQD 55 (56)
T ss_dssp SSCCSCSSSCCS--SCCEECSSSS-CEECSSSSSSCCCSCC--CSSCCCHHHHC
T ss_pred CCCCCCccCCCC--CeEEEcCCCC-cceECccCCCCcCCCC--CCceEChhhhC
Confidence 345789999976 5699999999 7788888875333332 24799999864
No 166
>2yw8_A RUN and FYVE domain-containing protein 1; structure genomics, structural genomics, NPPSFA; 3.00A {Homo sapiens} PDB: 2yqm_A
Probab=57.68 E-value=2.1 Score=37.73 Aligned_cols=37 Identities=24% Similarity=0.582 Sum_probs=30.4
Q ss_pred CCCCcccccccCC--CCceEecCcCCCCcccHhHHhhhCC
Q 002333 199 LERIKCHQCMKSE--RKYVVPCGKCRTKVYCIQCIKQWYP 236 (935)
Q Consensus 199 g~~~~CHQCrqk~--~~~~v~C~~C~r~~FC~~CL~~rY~ 236 (935)
.+...|..|.++- ..+.-.|+.|+ ..||..|...+.+
T Consensus 17 ~~~~~C~~C~~~Fs~~~RrHHCR~CG-~v~C~~Cs~~~~~ 55 (82)
T 2yw8_A 17 DEATHCRQCEKEFSISRRKHHCRNCG-HIFCNTCSSNELA 55 (82)
T ss_dssp CCCCBCTTTCCBCBTTBCCEECTTTC-CEECSGGGCEEEC
T ss_pred ccCCcccCcCCcccCccccccCCCCC-CEEChHHhCCeee
Confidence 3457899999875 35678999999 9999999998754
No 167
>2vqa_A SLL1358 protein, MNCA; periplasmic binding protein, metal-binding protein, cupin, BI-cupin, oxalate decarboxylase; 2.95A {Synechocystis SP}
Probab=56.51 E-value=3.2 Score=44.56 Aligned_cols=25 Identities=16% Similarity=0.312 Sum_probs=22.2
Q ss_pred eEEEeecCceeEecCCCcccccccc
Q 002333 842 WTFEQKLGEAVFIPAGCPHQVRNLK 866 (935)
Q Consensus 842 Wtf~Q~lGEAVFIPAGCPHQVRNLk 866 (935)
-++.=..||+++||+|.||..+|.-
T Consensus 96 ~~~~l~~GD~~~ip~g~~H~~~n~~ 120 (361)
T 2vqa_A 96 EIADVDKGGLWYFPRGWGHSIEGIG 120 (361)
T ss_dssp EEEEEETTEEEEECTTCEEEEEECS
T ss_pred EEEEEcCCCEEEECCCCeEEEEeCC
Confidence 4567778999999999999999986
No 168
>1zrr_A E-2/E-2' protein; nickel, cupin, beta helix, methionine salvage, oxidoreductase; NMR {Klebsiella oxytoca} SCOP: b.82.1.6 PDB: 2hji_A
Probab=56.49 E-value=7.3 Score=39.15 Aligned_cols=37 Identities=14% Similarity=0.104 Sum_probs=26.1
Q ss_pred EEEeecCceeEecCCCccccccccccceecccccCcc
Q 002333 843 TFEQKLGEAVFIPAGCPHQVRNLKSCTKVAVDFVSPE 879 (935)
Q Consensus 843 tf~Q~lGEAVFIPAGCPHQVRNLkSCIKVAlDFVSPE 879 (935)
++.=..||.|+||||.||...+-..--=+|+.|-+|+
T Consensus 123 ~~~l~~GDli~IP~g~~H~~~~~~~~~~~~ir~F~~~ 159 (179)
T 1zrr_A 123 QVLCEKNDLISVPAHTPHWFDMGSEPNFTAIRIFDNP 159 (179)
T ss_dssp EEECCCSCEEEECTTCCBCCCCSSCSSCEEEEEECCG
T ss_pred EEEECCCCEEEECCCCeEeeecCCCceEEEEEeccCC
Confidence 4556899999999999999888665322344444433
No 169
>2k16_A Transcription initiation factor TFIID subunit 3; protein, alternative splicing, metal-binding, nucleus, phosphoprotein, transcription regulation; NMR {Mus musculus} PDB: 2k17_A*
Probab=56.23 E-value=5.2 Score=34.29 Aligned_cols=50 Identities=20% Similarity=0.504 Sum_probs=36.5
Q ss_pred CCCcccccccCCCC-ceEecCcCCCCcccHhHHhhhCCCCChhhhhccCCCCCC
Q 002333 200 ERIKCHQCMKSERK-YVVPCGKCRTKVYCIQCIKQWYPKMSELDVAEICPFCRR 252 (935)
Q Consensus 200 ~~~~CHQCrqk~~~-~~v~C~~C~r~~FC~~CL~~rY~e~~~edv~~~CP~CRg 252 (935)
+...|..|++...+ .++.|-.|. .-|=..|+.-.-... .+..|.||.|+.
T Consensus 17 ~~~~C~~C~~~~~~~~mi~CD~C~-~wfH~~Cv~~~~~~~--~~~~w~C~~C~~ 67 (75)
T 2k16_A 17 QIWICPGCNKPDDGSPMIGCDDCD-DWYHWPCVGIMAAPP--EEMQWFCPKCAN 67 (75)
T ss_dssp EEECBTTTTBCCSSCCEEECSSSS-SEEEHHHHTCSSCCC--SSSCCCCTTTHH
T ss_pred CCcCCCCCCCCCCCCCEEEcCCCC-cccccccCCCCccCC--CCCCEEChhccC
Confidence 44679999988754 689999999 777788887433221 235799999964
No 170
>1wev_A Riken cDNA 1110020M19; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: g.50.1.2
Probab=55.64 E-value=1 Score=40.38 Aligned_cols=52 Identities=21% Similarity=0.516 Sum_probs=35.2
Q ss_pred CCCcccccccCCC---CceEecCcCCCCcccHhHHhhhCCCCC--hhhhhccCCCCCC
Q 002333 200 ERIKCHQCMKSER---KYVVPCGKCRTKVYCIQCIKQWYPKMS--ELDVAEICPFCRR 252 (935)
Q Consensus 200 ~~~~CHQCrqk~~---~~~v~C~~C~r~~FC~~CL~~rY~e~~--~edv~~~CP~CRg 252 (935)
....|..|++.+. +.++.|-.|. ..|=..|+.-...... ..+-.|.||.|+.
T Consensus 15 ~~~~C~vC~~~~~~~~~~ll~CD~C~-~~yH~~Cl~Ppl~~~~~~~p~g~W~C~~C~~ 71 (88)
T 1wev_A 15 MGLACVVCRQMTVASGNQLVECQECH-NLYHQDCHKPQVTDKEVNDPRLVWYCARCTR 71 (88)
T ss_dssp HCCSCSSSCCCCCCTTCCEEECSSSC-CEEETTTSSSCCCHHHHHCTTCCCCCHHHHH
T ss_pred CCCcCCCCCCCCCCCCCceEECCCCC-CeEcCccCCCcccccccCCCCCCeeCccccc
Confidence 3578999999864 6799999999 6666666653332110 1134599998854
No 171
>2ro1_A Transcription intermediary factor 1-beta; KAP, TIF, PHD finger, bromodomain, SUMO, acetylation, alternative splicing, metal-binding, nucleus; NMR {Homo sapiens}
Probab=55.23 E-value=4.6 Score=40.74 Aligned_cols=47 Identities=19% Similarity=0.492 Sum_probs=35.1
Q ss_pred CcccccccCCCCceEecCcCCCCcccHhHHhhhCCCCChhhhhccCCCCCCc
Q 002333 202 IKCHQCMKSERKYVVPCGKCRTKVYCIQCIKQWYPKMSELDVAEICPFCRRN 253 (935)
Q Consensus 202 ~~CHQCrqk~~~~~v~C~~C~r~~FC~~CL~~rY~e~~~edv~~~CP~CRg~ 253 (935)
..|..|+.. +.++.|-.|. ..|-..|+..-..... .-.|.||.|+..
T Consensus 3 ~~C~~C~~~--g~ll~Cd~C~-~~~H~~Cl~p~l~~~p--~g~W~C~~C~~~ 49 (189)
T 2ro1_A 3 TICRVCQKP--GDLVMCNQCE-FCFHLDCHLPALQDVP--GEEWSCSLCHVL 49 (189)
T ss_dssp CCBTTTCCC--SSCCCCTTTC-CBCCSTTSTTCCSSCC--CTTCCTTTTSCS
T ss_pred CcCccCCCC--CceeECCCCC-chhccccCCCCcccCC--CCCCCCcCccCC
Confidence 579999866 4589999999 8898889864333322 346999999865
No 172
>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*
Probab=54.61 E-value=5 Score=33.22 Aligned_cols=46 Identities=22% Similarity=0.618 Sum_probs=31.9
Q ss_pred CCcccccccCCCCceEecCcCCCCc-ccHhHHhhhCCCCChhhhhccCCCCCCc
Q 002333 201 RIKCHQCMKSERKYVVPCGKCRTKV-YCIQCIKQWYPKMSELDVAEICPFCRRN 253 (935)
Q Consensus 201 ~~~CHQCrqk~~~~~v~C~~C~r~~-FC~~CL~~rY~e~~~edv~~~CP~CRg~ 253 (935)
...|--|.......++.=..|+ .. ||..|+.++.. ..+.||.||..
T Consensus 7 ~~~C~IC~~~~~~~~~~~~pCg-H~~~C~~C~~~~~~------~~~~CPiCR~~ 53 (63)
T 2vje_B 7 LKPCSLCEKRPRDGNIIHGRTG-HLVTCFHCARRLKK------AGASCPICKKE 53 (63)
T ss_dssp GSBCTTTSSSBSCEEEEETTEE-EEEECHHHHHHHHH------TTCBCTTTCCB
T ss_pred CCCCcccCCcCCCeEEEecCCC-CHhHHHHHHHHHHH------hCCcCCCcCch
Confidence 3678889877655444333566 44 99999997652 23799999973
No 173
>2ct7_A Ring finger protein 31; IBR, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.4
Probab=54.54 E-value=6.9 Score=34.58 Aligned_cols=37 Identities=27% Similarity=0.908 Sum_probs=27.2
Q ss_pred ccCCCCc-ccccCcccccc----ccccccCcCCcccchhchH
Q 002333 324 LCGNDER-VYCNHCATSII----DLHRSCPKCSYELCLTCCK 360 (935)
Q Consensus 324 ~~~~DER-vyCDnCkTSI~----D~HRSC~~CsyDLCL~CC~ 360 (935)
.+..+.+ .||-+|.+.|. .....|+.|++.+|..|-.
T Consensus 18 ~v~~~~~~~wCP~C~~~~~~~~~~~~v~C~~C~~~FC~~C~~ 59 (86)
T 2ct7_A 18 VLMRDPKFLWCAQCSFGFIYEREQLEATCPQCHQTFCVRCKR 59 (86)
T ss_dssp CCCSCCCEECCSSSCCCEECCCSCSCEECTTTCCEECSSSCS
T ss_pred HHhcCCCEeECcCCCchheecCCCCceEeCCCCCccccccCC
Confidence 3334444 47999999764 3446899999999999964
No 174
>1wfk_A Zinc finger, FYVE domain containing 19; riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Mus musculus} SCOP: g.50.1.1
Probab=54.51 E-value=5.1 Score=35.94 Aligned_cols=35 Identities=20% Similarity=0.475 Sum_probs=29.3
Q ss_pred CCCcccccccCC--CCceEecCcCCCCcccHhHHhhhC
Q 002333 200 ERIKCHQCMKSE--RKYVVPCGKCRTKVYCIQCIKQWY 235 (935)
Q Consensus 200 ~~~~CHQCrqk~--~~~~v~C~~C~r~~FC~~CL~~rY 235 (935)
....|..|.++- ..+.-.|+.|+ ..||..|...+.
T Consensus 8 ~~~~C~~C~~~F~~~~RrHHCR~CG-~vfC~~Cs~~~~ 44 (88)
T 1wfk_A 8 MESRCYGCAVKFTLFKKEYGCKNCG-RAFCNGCLSFSA 44 (88)
T ss_dssp CCSBCTTTCCBCCSSSCEEECSSSC-CEEETTTSCEEE
T ss_pred cCCCCcCcCCcccCccccccCCCCC-CEEChhHcCCce
Confidence 457899999875 46778999999 999999998764
No 175
>1sfn_A Conserved hypothetical protein; structural genomics, nysgxrc target T1583, PSI, protein STRU initiative; 2.46A {Deinococcus radiodurans} SCOP: b.82.1.11
Probab=54.23 E-value=4.2 Score=41.92 Aligned_cols=31 Identities=23% Similarity=0.225 Sum_probs=24.9
Q ss_pred CccceEEEeecCceeEecCCCcccccccccc
Q 002333 838 GVEPWTFEQKLGEAVFIPAGCPHQVRNLKSC 868 (935)
Q Consensus 838 GVEpWtf~Q~lGEAVFIPAGCPHQVRNLkSC 868 (935)
.|..=++.=..||+++||||.||+++|...+
T Consensus 82 ~~~~~~~~l~~Gd~~~~p~~~~H~~~n~~~~ 112 (246)
T 1sfn_A 82 AVGGETRTLREYDYVYLPAGEKHMLTAKTDA 112 (246)
T ss_dssp ECSSCEEEECTTEEEEECTTCCCEEEEEEEE
T ss_pred EECCEEEEECCCCEEEECCCCCEEEEeCCCE
Confidence 3444466678899999999999999998544
No 176
>2d5f_A Glycinin A3B4 subunit; soybean, globulin, 11S,SEED storage protein, plant; 1.90A {Glycine max} PDB: 2d5h_A 1od5_A
Probab=53.60 E-value=5.3 Score=46.04 Aligned_cols=32 Identities=25% Similarity=0.388 Sum_probs=24.9
Q ss_pred eecCceeEecCCCccccccccccceecccccC
Q 002333 846 QKLGEAVFIPAGCPHQVRNLKSCTKVAVDFVS 877 (935)
Q Consensus 846 Q~lGEAVFIPAGCPHQVRNLkSCIKVAlDFVS 877 (935)
=..||+|+||||.||-..|.-+--=|++-++.
T Consensus 117 l~~GDvi~iPaG~~h~~~N~g~~~l~~v~~~d 148 (493)
T 2d5f_A 117 FNEGDVLVIPPGVPYWTYNTGDEPVVAISLLD 148 (493)
T ss_dssp EETTEEEEECTTCCEEEEECSSSCEEEEEEEC
T ss_pred ecCCCEEEECCCCcEEEEeCCCCCEEEEEEec
Confidence 36799999999999999999875445544444
No 177
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=53.18 E-value=5.3 Score=40.79 Aligned_cols=46 Identities=11% Similarity=0.111 Sum_probs=33.9
Q ss_pred CCcccccccCCCCceEecCcCCCCcccHhHHhhhCCCCChhhhhccCCCCCCcc
Q 002333 201 RIKCHQCMKSERKYVVPCGKCRTKVYCIQCIKQWYPKMSELDVAEICPFCRRNC 254 (935)
Q Consensus 201 ~~~CHQCrqk~~~~~v~C~~C~r~~FC~~CL~~rY~e~~~edv~~~CP~CRg~C 254 (935)
-..|.-|..--.+.++ ..|+ ..||..||..|.... ...||+|+...
T Consensus 208 ~~~c~i~~~~~~dPv~--~~~g-h~f~~~~i~~~~~~~-----~~~cP~~~~~~ 253 (281)
T 2c2l_A 208 YLCGKISFELMREPCI--TPSG-ITYDRKDIEEHLQRV-----GHFNPVTRSPL 253 (281)
T ss_dssp TTBCTTTCSBCSSEEE--CSSC-CEEETTHHHHHHHHT-----CSSCTTTCCCC
T ss_pred ccCCcCcCCHhcCCeE--CCCC-CEECHHHHHHHHHHC-----CCCCcCCCCCC
Confidence 4778888877666665 4599 999999999998421 22499998643
No 178
>3es1_A Cupin 2, conserved barrel domain protein; YP_001165807.1; HET: MSE; 1.91A {Novosphingobium aromaticivorans dsm 12ORGANISM_TAXID}
Probab=52.77 E-value=6 Score=39.58 Aligned_cols=35 Identities=14% Similarity=0.092 Sum_probs=26.3
Q ss_pred EEEeecCceeEecCCCccccccccccceecccccCc
Q 002333 843 TFEQKLGEAVFIPAGCPHQVRNLKSCTKVAVDFVSP 878 (935)
Q Consensus 843 tf~Q~lGEAVFIPAGCPHQVRNLkSCIKVAlDFVSP 878 (935)
++.=..||+| ||+|.||+.+|.-.---..+-.++|
T Consensus 119 ~~~L~~GDsi-~~~g~~H~~~N~g~~~ar~l~V~~P 153 (172)
T 3es1_A 119 KRTVRQGGII-VQRGTNHLWRNTTDKPCRIAFILIE 153 (172)
T ss_dssp EEEECTTCEE-EECSCCBEEECCSSSCEEEEEEEEE
T ss_pred EEEECCCCEE-EeCCCcEEEEeCCCCCEEEEEEEcC
Confidence 4556899999 9999999999987654444444444
No 179
>3asl_A E3 ubiquitin-protein ligase UHRF1; histone reader module, epigenetic regulation, LI binding protein complex; 1.41A {Homo sapiens} PDB: 3sou_A 3sow_A* 3sox_A 3zvy_A 2lgg_A 2lgk_A* 2lgl_A 3t6r_A 3zvz_B
Probab=52.03 E-value=6.5 Score=33.83 Aligned_cols=48 Identities=23% Similarity=0.588 Sum_probs=35.6
Q ss_pred cccccccCC-CCceEecCcCCCCcccHhHHhhhCCCCChhhhhccCCCCCC
Q 002333 203 KCHQCMKSE-RKYVVPCGKCRTKVYCIQCIKQWYPKMSELDVAEICPFCRR 252 (935)
Q Consensus 203 ~CHQCrqk~-~~~~v~C~~C~r~~FC~~CL~~rY~e~~~edv~~~CP~CRg 252 (935)
.|+.|++.+ .+.++.|-.|. ..|=..||..-...++ +...|.||.|+.
T Consensus 20 ~C~~C~~~~~~~~ll~CD~C~-~~yH~~Cl~Ppl~~~P-~g~~W~C~~C~~ 68 (70)
T 3asl_A 20 ACHLCGGRQDPDKQLMCDECD-MAFHIYCLDPPLSSVP-SEDEWYCPECRN 68 (70)
T ss_dssp SBTTTCCCSCGGGEEECTTTC-CEEEGGGSSSCCSSCC-SSSCCCCTTTSC
T ss_pred CCcCCCCcCCCCCEEEcCCCC-CceecccCCCCcCCCC-CCCCcCCcCccC
Confidence 678888876 57889999999 7777888875444433 233899999974
No 180
>4b29_A Dimethylsulfoniopropionate lyase; hydrolase, dimethylsulfide, sulphur cycle; 1.72A {Roseovarius nubinhibens ism}
Probab=51.64 E-value=4.9 Score=41.93 Aligned_cols=44 Identities=20% Similarity=0.369 Sum_probs=30.7
Q ss_pred cCCcccCccccCHHHHHHHHH--HhCcc-ceEEEeecCceeEecCCCcccccccc
Q 002333 815 IHPIHDQCFYLSSEHKKKLKE--EFGVE-PWTFEQKLGEAVFIPAGCPHQVRNLK 866 (935)
Q Consensus 815 ~dPIHDQ~fYLt~ehk~rLkE--EyGVE-pWtf~Q~lGEAVFIPAGCPHQVRNLk 866 (935)
.|| ++|.+|+ |.- ||.|+ .=++.=..||.||||+|.||.+|+..
T Consensus 149 sHp-~EEiy~V-------LsG~~e~~v~~g~~~~l~pGd~v~ipsgv~Ha~rt~d 195 (217)
T 4b29_A 149 EHL-PEELYSV-------VSGRALFHLRNAPDLMLEPGQTRFHPANAPHAMTTLT 195 (217)
T ss_dssp ECS-SEEEEEE-------EEECEEEEETTSCCEEECTTCEEEECTTCCEEEECCS
T ss_pred CCC-CceEEEE-------EeCCEEEEECCCCEEecCCCCEEEcCCCCceeEEECC
Confidence 566 4565554 222 35555 45566789999999999999999743
No 181
>1z2q_A LM5-1; membrane protein, FYVE domain, zinc-finger; NMR {Leishmania major}
Probab=51.44 E-value=6.1 Score=34.89 Aligned_cols=35 Identities=20% Similarity=0.412 Sum_probs=29.7
Q ss_pred CCCcccccccCC--CCceEecCcCCCCcccHhHHhhhC
Q 002333 200 ERIKCHQCMKSE--RKYVVPCGKCRTKVYCIQCIKQWY 235 (935)
Q Consensus 200 ~~~~CHQCrqk~--~~~~v~C~~C~r~~FC~~CL~~rY 235 (935)
+...|..|+++= ..+.-.|+.|+ ..||..|..++.
T Consensus 20 ~~~~C~~C~~~Fs~~~RrHHCR~CG-~v~C~~Cs~~~~ 56 (84)
T 1z2q_A 20 DAPACNGCGCVFTTTVRRHHCRNCG-YVLCGDCSRHRA 56 (84)
T ss_dssp TCCBCTTTCCBCCTTSCCEECTTTC-CEECTGGGCCEE
T ss_pred CCCCCcCcCCccccchhcccccCCC-cEEChHHhCCeE
Confidence 567899999875 36678999999 999999998874
No 182
>2e9q_A 11S globulin subunit beta; cucubitin, pumpkin SEED storage globulin, plant protein; 2.20A {Cucurbita maxima} PDB: 2evx_A
Probab=50.58 E-value=5.5 Score=45.49 Aligned_cols=35 Identities=26% Similarity=0.415 Sum_probs=26.1
Q ss_pred eecCceeEecCCCccccccccccceecccccCccc
Q 002333 846 QKLGEAVFIPAGCPHQVRNLKSCTKVAVDFVSPEN 880 (935)
Q Consensus 846 Q~lGEAVFIPAGCPHQVRNLkSCIKVAlDFVSPEn 880 (935)
=+.||+|+||||.||-..|.-+--=+++-++++.|
T Consensus 131 l~~GDv~~iPaG~~H~~~N~g~~~l~~l~~~d~~n 165 (459)
T 2e9q_A 131 FREGDLLVVPAGVSHWMYNRGQSDLVLIVFADTRN 165 (459)
T ss_dssp EETTEEEEECTTCCEEEEECSSSCEEEEEEEESSS
T ss_pred ecCCCEEEECCCCCEEEEeCCCCCEEEEEEecCCC
Confidence 35799999999999999999865555554444333
No 183
>3t7l_A Zinc finger FYVE domain-containing protein 16; structural genomics consortium, SGC, lipid BIND protein, transport protein; 1.09A {Homo sapiens}
Probab=50.34 E-value=5.3 Score=35.86 Aligned_cols=35 Identities=29% Similarity=0.569 Sum_probs=29.2
Q ss_pred CCCcccccccCC--CCceEecCcCCCCcccHhHHhhhC
Q 002333 200 ERIKCHQCMKSE--RKYVVPCGKCRTKVYCIQCIKQWY 235 (935)
Q Consensus 200 ~~~~CHQCrqk~--~~~~v~C~~C~r~~FC~~CL~~rY 235 (935)
+...|..|+++= ..+.-.|++|+ ..||..|...+-
T Consensus 19 ~~~~C~~C~~~F~~~~RrhhCr~CG-~v~C~~Cs~~~~ 55 (90)
T 3t7l_A 19 EAPNCMNCQVKFTFTKRRHHCRACG-KVFCGVCCNRKC 55 (90)
T ss_dssp GCCBCTTTCCBCCSSSCCEECTTTC-CEECGGGSCEEE
T ss_pred cCCcCcCCCCcccchhhCccccCCC-CEECCcccCCee
Confidence 457899999865 35678999999 999999998874
No 184
>1x4u_A Zinc finger, FYVE domain containing 27 isoform B; phosphoinositide binding, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=49.99 E-value=5.5 Score=35.14 Aligned_cols=37 Identities=22% Similarity=0.487 Sum_probs=30.3
Q ss_pred CCCCcccccccCC--CCceEecCcCCCCcccHhHHhhhCC
Q 002333 199 LERIKCHQCMKSE--RKYVVPCGKCRTKVYCIQCIKQWYP 236 (935)
Q Consensus 199 g~~~~CHQCrqk~--~~~~v~C~~C~r~~FC~~CL~~rY~ 236 (935)
.+...|..|+++= ..+.-.|+.|+ ..||..|..++.+
T Consensus 12 ~~~~~C~~C~~~F~~~~RrHHCR~CG-~vfC~~Cs~~~~~ 50 (84)
T 1x4u_A 12 NNFGNCTGCSATFSVLKKRRSCSNCG-NSFCSRCCSFKVP 50 (84)
T ss_dssp CCCSSCSSSCCCCCSSSCCEECSSSC-CEECTTTSCEEEC
T ss_pred CCCCcCcCcCCccccchhhhhhcCCC-cEEChhhcCCcee
Confidence 3557899999875 46678999999 9999999987654
No 185
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B
Probab=49.94 E-value=12 Score=33.91 Aligned_cols=45 Identities=11% Similarity=0.015 Sum_probs=34.8
Q ss_pred CCCcccccccCCCCceEecCcCCCCcccHhHHhhhCCCCChhhhhccCCCCCCc
Q 002333 200 ERIKCHQCMKSERKYVVPCGKCRTKVYCIQCIKQWYPKMSELDVAEICPFCRRN 253 (935)
Q Consensus 200 ~~~~CHQCrqk~~~~~v~C~~C~r~~FC~~CL~~rY~e~~~edv~~~CP~CRg~ 253 (935)
+...|--|..--.+.++- .|+ ..||..||..|... ...||+|+..
T Consensus 28 ~~~~CpI~~~~m~dPV~~--~cG-htf~r~~I~~~l~~------~~~cP~~~~~ 72 (100)
T 2kre_A 28 DEFRDPLMDTLMTDPVRL--PSG-TIMDRSIILRHLLN------SPTDPFNRQT 72 (100)
T ss_dssp TTTBCTTTCSBCSSEEEE--TTT-EEEEHHHHHHHTTS------CSBCSSSCCB
T ss_pred HhhCCcCccCcccCCeEC--CCC-CEEchHHHHHHHHc------CCCCCCCCCC
Confidence 347888888776666654 488 88999999999864 3589999863
No 186
>1wff_A Riken cDNA 2810002D23 protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.80.1.1
Probab=49.93 E-value=15 Score=33.29 Aligned_cols=34 Identities=21% Similarity=0.515 Sum_probs=26.4
Q ss_pred CCCcccccccCCCC-ceEecCcCCCCcccHhHHhhhCCCC
Q 002333 200 ERIKCHQCMKSERK-YVVPCGKCRTKVYCIQCIKQWYPKM 238 (935)
Q Consensus 200 ~~~~CHQCrqk~~~-~~v~C~~C~r~~FC~~CL~~rY~e~ 238 (935)
....|+.|+++..- .-..|+ |+ ..||. .-||++.
T Consensus 24 ~~~rC~~C~kkvgl~~~f~Cr-Cg-~~FC~---~HRy~e~ 58 (85)
T 1wff_A 24 IMKHCFLCGKKTGLATSFECR-CG-NNFCA---SHRYAEA 58 (85)
T ss_dssp CCCBCSSSCCBCSSSSCEECT-TC-CEECT---TTCSTGG
T ss_pred cCccchhhCCeecccCCeEcC-CC-CEecc---cCCCccC
Confidence 44799999998754 368996 99 89975 6788864
No 187
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=49.73 E-value=19 Score=31.36 Aligned_cols=48 Identities=17% Similarity=0.478 Sum_probs=35.7
Q ss_pred CCCcccccccCCCCceEecCcCCCCcccHhHHhhhCCCCChhhhhccCCCCCCc
Q 002333 200 ERIKCHQCMKSERKYVVPCGKCRTKVYCIQCIKQWYPKMSELDVAEICPFCRRN 253 (935)
Q Consensus 200 ~~~~CHQCrqk~~~~~v~C~~C~r~~FC~~CL~~rY~e~~~edv~~~CP~CRg~ 253 (935)
....|.-|+.--. .-..|..|+ .+|=..||.+|+... -.-.||.||..
T Consensus 14 ~i~~C~IC~~~i~-~g~~C~~C~-h~fH~~Ci~kWl~~~----~~~~CP~Cr~~ 61 (74)
T 2ct0_A 14 AVKICNICHSLLI-QGQSCETCG-IRMHLPCVAKYFQSN----AEPRCPHCNDY 61 (74)
T ss_dssp SSCBCSSSCCBCS-SSEECSSSC-CEECHHHHHHHSTTC----SSCCCTTTCSC
T ss_pred CCCcCcchhhHcc-cCCccCCCC-chhhHHHHHHHHHhc----CCCCCCCCcCc
Confidence 4467888876543 346899999 889999999999532 12589999864
No 188
>3shb_A E3 ubiquitin-protein ligase UHRF1; unmodified histone, methylation, UHRF1, PHD, ligase-NUCL protein complex; 1.80A {Homo sapiens}
Probab=49.72 E-value=6.2 Score=34.77 Aligned_cols=48 Identities=23% Similarity=0.604 Sum_probs=34.7
Q ss_pred cccccccCC-CCceEecCcCCCCcccHhHHhhhCCCCChhhhhccCCCCCC
Q 002333 203 KCHQCMKSE-RKYVVPCGKCRTKVYCIQCIKQWYPKMSELDVAEICPFCRR 252 (935)
Q Consensus 203 ~CHQCrqk~-~~~~v~C~~C~r~~FC~~CL~~rY~e~~~edv~~~CP~CRg 252 (935)
.|+.|++.. .+.++.|-.|. ..|=..||.---..++. ...|.||.|+.
T Consensus 28 ~C~vC~~~~d~~~ll~CD~C~-~~yH~~Cl~PpL~~~P~-g~~W~C~~C~~ 76 (77)
T 3shb_A 28 ACHLCGGRQDPDKQLMCDECD-MAFHIYCLDPPLSSVPS-EDEWYCPECRN 76 (77)
T ss_dssp SBTTTCCCSCGGGEEECTTTC-CEEETTTSSSCCSSCCS-SSCCCCTTTC-
T ss_pred cCCccCCCCCCcceeEeCCCC-CccCcccCCCcccCCCC-CCceECcCccc
Confidence 789999887 47789999999 67878888743333322 33399999985
No 189
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}
Probab=49.72 E-value=5.2 Score=38.74 Aligned_cols=45 Identities=22% Similarity=0.581 Sum_probs=33.1
Q ss_pred CCCcccccccCCCCceEecCcCCCCcccHhHHhhhCCCCChhhhhccCCCCCC
Q 002333 200 ERIKCHQCMKSERKYVVPCGKCRTKVYCIQCIKQWYPKMSELDVAEICPFCRR 252 (935)
Q Consensus 200 ~~~~CHQCrqk~~~~~v~C~~C~r~~FC~~CL~~rY~e~~~edv~~~CP~CRg 252 (935)
+...|--|...-...+ .+ .|+ -.||..||.+|... -...||.||.
T Consensus 17 ~~~~C~IC~~~~~~pv-~~-~Cg-H~fC~~Ci~~~~~~-----~~~~CP~Cr~ 61 (170)
T 3hcs_A 17 SKYECPICLMALREAV-QT-PCG-HRFCKACIIKSIRD-----AGHKCPVDNE 61 (170)
T ss_dssp GGGBCTTTCSBCSSEE-EC-TTS-CEEEHHHHHHHHHH-----HCSBCTTTCC
T ss_pred CCCCCCCCChhhcCcE-EC-CCC-CHHHHHHHHHHHHh-----CCCCCCCCcc
Confidence 3478999987665544 34 799 99999999999742 1238999875
No 190
>1vr3_A Acireductone dioxygenase; 13543033, structural genomics, JOI for structural genomics, JCSG, protein structure initiative oxidoreductase; 2.06A {Mus musculus} SCOP: b.82.1.6
Probab=48.96 E-value=10 Score=38.69 Aligned_cols=37 Identities=19% Similarity=0.229 Sum_probs=28.0
Q ss_pred EEEeecCceeEecCCCccccccccccceecccccCcc
Q 002333 843 TFEQKLGEAVFIPAGCPHQVRNLKSCTKVAVDFVSPE 879 (935)
Q Consensus 843 tf~Q~lGEAVFIPAGCPHQVRNLkSCIKVAlDFVSPE 879 (935)
++.=..||.|+||||.||...+-.+--=+|+.|-+++
T Consensus 128 ~i~v~~GDlIiIPaG~~H~f~~~~~~~~~airlF~~~ 164 (191)
T 1vr3_A 128 RISMEKGDMITLPAGIYHRFTLDEKNYVKAMRLFVGE 164 (191)
T ss_dssp EEEEETTEEEEECTTCCEEEEECTTCCEEEEEEESSS
T ss_pred EEEECCCCEEEECcCCcCCcccCCCCCEEEEEEECCC
Confidence 6777899999999999999887655433456555555
No 191
>1sq4_A GLXB, glyoxylate-induced protein; structural genomics, double beta barrel protein, PSI, protei structure initiative; 2.70A {Pseudomonas aeruginosa} SCOP: b.82.1.11
Probab=48.74 E-value=5.4 Score=42.13 Aligned_cols=32 Identities=16% Similarity=0.248 Sum_probs=25.8
Q ss_pred HhCccceEEEeecCceeEecCCCccccccccc
Q 002333 836 EFGVEPWTFEQKLGEAVFIPAGCPHQVRNLKS 867 (935)
Q Consensus 836 EyGVEpWtf~Q~lGEAVFIPAGCPHQVRNLkS 867 (935)
+|-+..=++.=..||.+|+|+||||+.+|.-.
T Consensus 224 ~~~~~~~~~~v~~GD~~~~~~~~~h~~~n~g~ 255 (278)
T 1sq4_A 224 VYRLNQDWVEVEAGDFMWLRAFCPQACYSGGP 255 (278)
T ss_dssp EEEETTEEEEEETTCEEEEEESCCEEEECCSS
T ss_pred EEEECCEEEEeCCCCEEEECCCCCEEEEcCCC
Confidence 35555666777899999999999999999654
No 192
>1rc6_A Hypothetical protein YLBA; structural genomics, NYSGXRC, SGX clone NAME 3174C1TCT3B1, T T1521, PSI, protein initiative; 2.60A {Escherichia coli} SCOP: b.82.1.11
Probab=48.69 E-value=7.8 Score=40.02 Aligned_cols=30 Identities=23% Similarity=0.295 Sum_probs=24.6
Q ss_pred CccceEEEeecCceeEecCCCccccccccc
Q 002333 838 GVEPWTFEQKLGEAVFIPAGCPHQVRNLKS 867 (935)
Q Consensus 838 GVEpWtf~Q~lGEAVFIPAGCPHQVRNLkS 867 (935)
-|..=++.=..||++++|||.||+.+|.-+
T Consensus 95 ~~~~~~~~L~~Gd~~~~~~~~~H~~~N~~~ 124 (261)
T 1rc6_A 95 KAEGKTFALSEGGYLYCPPGSLMTFVNAQA 124 (261)
T ss_dssp EETTEEEEEETTEEEEECTTCCCEEEECSS
T ss_pred EECCEEEEECCCCEEEECCCCCEEEEeCCC
Confidence 344556777899999999999999999854
No 193
>1sef_A Conserved hypothetical protein; structural genomics, nysgxrc target T1582, PSI, protein STRU initiative; 2.05A {Enterococcus faecalis} SCOP: b.82.1.11
Probab=48.56 E-value=6.2 Score=41.22 Aligned_cols=31 Identities=13% Similarity=0.079 Sum_probs=24.9
Q ss_pred hCccceEEEeecCceeEecCCCccccccccc
Q 002333 837 FGVEPWTFEQKLGEAVFIPAGCPHQVRNLKS 867 (935)
Q Consensus 837 yGVEpWtf~Q~lGEAVFIPAGCPHQVRNLkS 867 (935)
..|..=++.=..||++++|||.||+.+|.-+
T Consensus 97 ~~~~~~~~~L~~GD~~~~~~~~~H~~~N~~~ 127 (274)
T 1sef_A 97 VSDGQETHELEAGGYAYFTPEMKMYLANAQE 127 (274)
T ss_dssp EECSSCEEEEETTEEEEECTTSCCEEEESSS
T ss_pred EEECCEEEEECCCCEEEECCCCCEEEEeCCC
Confidence 3344456677899999999999999999854
No 194
>4e2q_A Ureidoglycine aminohydrolase; BI-cupin, manganese binding, endoplasmic RET hydrolase; 2.50A {Arabidopsis thaliana} PDB: 4e2s_A
Probab=48.55 E-value=5.6 Score=42.42 Aligned_cols=24 Identities=8% Similarity=0.295 Sum_probs=20.7
Q ss_pred EEEeecCceeEecCCCcccccccc
Q 002333 843 TFEQKLGEAVFIPAGCPHQVRNLK 866 (935)
Q Consensus 843 tf~Q~lGEAVFIPAGCPHQVRNLk 866 (935)
++.=..||++++|||.|||++|-.
T Consensus 110 ~~~L~~Gds~y~p~~~~H~~~N~~ 133 (266)
T 4e2q_A 110 SKKLTVDSYAYLPPNFHHSLDCVE 133 (266)
T ss_dssp CEEECTTEEEEECTTCCCEEEESS
T ss_pred EEEEcCCCEEEECCCCCEEEEeCC
Confidence 455678999999999999999954
No 195
>2puy_A PHD finger protein 21A; PHD finger, histone CODE, BRAF-HDAC complex, transcription; 1.43A {Homo sapiens}
Probab=48.47 E-value=4.6 Score=33.41 Aligned_cols=47 Identities=28% Similarity=0.663 Sum_probs=35.3
Q ss_pred CCCcccccccCCCCceEecCcCCCCcccHhHHhhhCCCCChhhhhccCCCCC
Q 002333 200 ERIKCHQCMKSERKYVVPCGKCRTKVYCIQCIKQWYPKMSELDVAEICPFCR 251 (935)
Q Consensus 200 ~~~~CHQCrqk~~~~~v~C~~C~r~~FC~~CL~~rY~e~~~edv~~~CP~CR 251 (935)
+...|..|++. +.++.|-.|. ..|=..|+..-...++ .-.|.||.|.
T Consensus 4 ~~~~C~vC~~~--g~ll~Cd~C~-~~fH~~Cl~ppl~~~p--~g~W~C~~C~ 50 (60)
T 2puy_A 4 HEDFCSVCRKS--GQLLMCDTCS-RVYHLDCLDPPLKTIP--KGMWICPRCQ 50 (60)
T ss_dssp CCSSCTTTCCC--SSCEECSSSS-CEECGGGSSSCCSSCC--CSCCCCHHHH
T ss_pred CCCCCcCCCCC--CcEEEcCCCC-cCEECCcCCCCcCCCC--CCceEChhcc
Confidence 34789999976 5699999999 8888889875433332 2479999884
No 196
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=48.40 E-value=10 Score=40.72 Aligned_cols=49 Identities=18% Similarity=0.409 Sum_probs=37.7
Q ss_pred CCCcccccccCCCCceEecCcCCCCcccHhHHhhhCCCCChhhhhccCCC--CCCcc
Q 002333 200 ERIKCHQCMKSERKYVVPCGKCRTKVYCIQCIKQWYPKMSELDVAEICPF--CRRNC 254 (935)
Q Consensus 200 ~~~~CHQCrqk~~~~~v~C~~C~r~~FC~~CL~~rY~e~~~edv~~~CP~--CRg~C 254 (935)
...+|.-|..--...++ ...|+ ..||..||..|..+. ..+.||+ |+..+
T Consensus 180 ~el~CPIcl~~f~DPVt-s~~CG-HsFcR~cI~~~~~~~----~~~~CPvtGCr~~l 230 (267)
T 3htk_C 180 IELTCPITCKPYEAPLI-SRKCN-HVFDRDGIQNYLQGY----TTRDCPQAACSQVV 230 (267)
T ss_dssp CCSBCTTTSSBCSSEEE-ESSSC-CEEEHHHHHHHSTTC----SCEECSGGGCSCEE
T ss_pred eeeECcCccCcccCCee-eCCCC-CcccHHHHHHHHHhC----CCCCCCcccccCcC
Confidence 34889999987666564 45799 899999999998642 3489999 99843
No 197
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Probab=47.84 E-value=12 Score=34.34 Aligned_cols=28 Identities=29% Similarity=0.978 Sum_probs=22.9
Q ss_pred CcCCCCcccHhHHhhhCCCCChhhhhccCCCCCCc
Q 002333 219 GKCRTKVYCIQCIKQWYPKMSELDVAEICPFCRRN 253 (935)
Q Consensus 219 ~~C~r~~FC~~CL~~rY~e~~~edv~~~CP~CRg~ 253 (935)
..|+ ..|+..||..|... ...||.||..
T Consensus 71 ~~C~-H~FH~~Ci~~Wl~~------~~~CP~Cr~~ 98 (106)
T 3dpl_R 71 GVCN-HAFHFHCISRWLKT------RQVCPLDNRE 98 (106)
T ss_dssp ETTS-CEEEHHHHHHHHTT------CSBCSSSCSB
T ss_pred cccC-cEECHHHHHHHHHc------CCcCcCCCCc
Confidence 4688 99999999999753 4589999873
No 198
>3c3v_A Arachin ARAH3 isoform; peanut allergen, allergy, glycinin; 1.73A {Arachis hypogaea}
Probab=46.34 E-value=7.5 Score=45.05 Aligned_cols=34 Identities=24% Similarity=0.374 Sum_probs=26.4
Q ss_pred ecCceeEecCCCccccccccccceecccccCccc
Q 002333 847 KLGEAVFIPAGCPHQVRNLKSCTKVAVDFVSPEN 880 (935)
Q Consensus 847 ~lGEAVFIPAGCPHQVRNLkSCIKVAlDFVSPEn 880 (935)
..||+|+||||.||-..|.-+--=||+-++.+-|
T Consensus 131 ~~GDvi~iPaG~~hw~~N~g~~~l~~v~~~d~~n 164 (510)
T 3c3v_A 131 NEGDLIAVPTGVAFWLYNDHDTDVVAVSLTDTNN 164 (510)
T ss_dssp CTTEEEEECTTCEEEEEECSSSCEEEEEEECTTB
T ss_pred cCCCEEEECCCCCEEEEeCCCCCEEEEEEeCCCC
Confidence 5699999999999999999875555554455444
No 199
>2d40_A Z3393, putative gentisate 1,2-dioxygenase; gentisic acid, bicupin, tetramer, montreal- bacterial structural genomics initiative, BSGI; 2.41A {Escherichia coli} SCOP: b.82.1.23
Probab=45.91 E-value=9.5 Score=41.73 Aligned_cols=27 Identities=11% Similarity=0.095 Sum_probs=24.3
Q ss_pred ccceEEEeecCceeEecCCCccccccc
Q 002333 839 VEPWTFEQKLGEAVFIPAGCPHQVRNL 865 (935)
Q Consensus 839 VEpWtf~Q~lGEAVFIPAGCPHQVRNL 865 (935)
|.+-+|.=..||+++||+|++||++|-
T Consensus 303 v~~~~~~~~~GD~~~vP~~~~H~~~n~ 329 (354)
T 2d40_A 303 IGNETFSFSAKDIFVVPTWHGVSFQTT 329 (354)
T ss_dssp ETTEEEEEETTCEEEECTTCCEEEEEE
T ss_pred ECCEEEEEcCCCEEEECCCCeEEEEeC
Confidence 457888899999999999999999994
No 200
>2a20_A Regulating synaptic membrane exocytosis protein 2; zinc-finger domain, metal binding protein; NMR {Rattus norvegicus} PDB: 2cjs_C
Probab=45.73 E-value=2 Score=36.69 Aligned_cols=52 Identities=21% Similarity=0.534 Sum_probs=38.3
Q ss_pred ccCCCCcccccccCCC--CceEecCcCCCCcccHhHHhhhCCCCChhhhhccCCCCC
Q 002333 197 KELERIKCHQCMKSER--KYVVPCGKCRTKVYCIQCIKQWYPKMSELDVAEICPFCR 251 (935)
Q Consensus 197 ~~g~~~~CHQCrqk~~--~~~v~C~~C~r~~FC~~CL~~rY~e~~~edv~~~CP~CR 251 (935)
.+++..+|+-|.+.+. +.--.|..|. .+||.+|=-.+- +...-+.|.|-.||
T Consensus 5 ~~~d~~~C~iC~KTKFADG~Gh~C~yCk-~r~CaRCGg~v~--lr~~k~~WvC~lC~ 58 (62)
T 2a20_A 5 QKGDAPTCGICHKTKFADGCGHNCSYCQ-TKFCARCGGRVS--LRSNKVMWVCNLCR 58 (62)
T ss_dssp CSSCCCCCSSSSCSCCCSSCCEEBTTTC-CEECTTSEEEEE--SSTTCEEEEEHHHH
T ss_pred ccCCcchhhhhccceeccCCCccccccC-CeeecccCCEee--ecCCeEEEEehhhh
Confidence 4567789999997773 4457899999 889999976443 23446789887775
No 201
>1y02_A CARP2, FYVE-ring finger protein sakura; zinc-binding module, phosphoinositide binding, caspase regulation, metal binding protein; 1.80A {Homo sapiens} SCOP: a.140.2.1 g.50.1.1
Probab=45.67 E-value=6.2 Score=37.60 Aligned_cols=36 Identities=22% Similarity=0.485 Sum_probs=27.0
Q ss_pred CCCcccccccCC--CCceEecCcCCCCcccHhHHhhhCC
Q 002333 200 ERIKCHQCMKSE--RKYVVPCGKCRTKVYCIQCIKQWYP 236 (935)
Q Consensus 200 ~~~~CHQCrqk~--~~~~v~C~~C~r~~FC~~CL~~rY~ 236 (935)
....|..|..+= ..+.-.|++|+ +.||..|..++.+
T Consensus 18 ~~~~C~~C~~~Fs~~~RkHHCR~CG-~ifC~~Cs~~~~~ 55 (120)
T 1y02_A 18 LEPSCKSCGAHFANTARKQTCLDCK-KNFCMTCSSQVGN 55 (120)
T ss_dssp --CCCTTTCCCCSSGGGCEECTTTC-CEECGGGEEC---
T ss_pred ccCcccCcCCccccccccccCCCCC-CeeCHHHhCCCCC
Confidence 347899999865 35678999999 9999999998765
No 202
>3ask_A E3 ubiquitin-protein ligase UHRF1; histone reader modules, epigenetic regulation, trimethylaion of lysine residue, ligase-DNA binding protein; HET: M3L; 2.90A {Homo sapiens}
Probab=44.60 E-value=6.2 Score=41.39 Aligned_cols=49 Identities=22% Similarity=0.569 Sum_probs=32.5
Q ss_pred CcccccccCC-CCceEecCcCCCCcccHhHHhhhCCCCChhhhhccCCCCCC
Q 002333 202 IKCHQCMKSE-RKYVVPCGKCRTKVYCIQCIKQWYPKMSELDVAEICPFCRR 252 (935)
Q Consensus 202 ~~CHQCrqk~-~~~~v~C~~C~r~~FC~~CL~~rY~e~~~edv~~~CP~CRg 252 (935)
-.|..|++.+ .+.++.|-.|. ..|=..||..--..++ +...|.||.|+.
T Consensus 175 c~C~vC~~~~~~~~lL~CD~C~-~~yH~~CL~PPL~~vP-~G~~W~Cp~C~~ 224 (226)
T 3ask_A 175 CACHLCGGRQDPDKQLMCDECD-MAFHIYCLDPPLSSVP-SEDEWYCPECRN 224 (226)
T ss_dssp TSCSSSCCCCC--CCEECSSSC-CEECSCC--CCCCSCC-SSSCCCCGGGC-
T ss_pred CCCcCCCCCCCCCCeEEcCCCC-cceeCccCCCCcccCC-CCCCCCCcCCcC
Confidence 3799999876 46789999999 6677778874333333 233799999964
No 203
>2e6s_A E3 ubiquitin-protein ligase UHRF2; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=44.28 E-value=9.6 Score=33.49 Aligned_cols=48 Identities=23% Similarity=0.578 Sum_probs=34.2
Q ss_pred cccccccCC-CCceEecCcCCCCcccHhHHhhhCCCCChhhhhccCCCCCC
Q 002333 203 KCHQCMKSE-RKYVVPCGKCRTKVYCIQCIKQWYPKMSELDVAEICPFCRR 252 (935)
Q Consensus 203 ~CHQCrqk~-~~~~v~C~~C~r~~FC~~CL~~rY~e~~~edv~~~CP~CRg 252 (935)
.|..|.+.+ .+.++.|-.|. ..|=..||.--...++ +...|.||.|..
T Consensus 28 ~C~vC~~~~~~~~ll~CD~C~-~~yH~~Cl~Ppl~~~P-~g~~W~C~~C~~ 76 (77)
T 2e6s_A 28 SCRVCGGKHEPNMQLLCDECN-VAYHIYCLNPPLDKVP-EEEYWYCPSCKT 76 (77)
T ss_dssp SCSSSCCCCCSTTEEECSSSC-CEEETTSSSSCCSSCC-CSSCCCCTTTCC
T ss_pred CCcCcCCcCCCCCEEEcCCCC-ccccccccCCCccCCC-CCCCcCCcCccC
Confidence 788888875 57789999999 6677777764333332 233799999974
No 204
>1wg2_A Zinc finger (AN1-like) family protein; riken structural genomics/proteomics initiative, RSGI, structural genomics, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.80.1.1
Probab=44.28 E-value=14 Score=31.83 Aligned_cols=33 Identities=27% Similarity=0.688 Sum_probs=25.9
Q ss_pred CCcccccccCCCCceEecCcCCCCcccHhHHhhhCCCC
Q 002333 201 RIKCHQCMKSERKYVVPCGKCRTKVYCIQCIKQWYPKM 238 (935)
Q Consensus 201 ~~~CHQCrqk~~~~~v~C~~C~r~~FC~~CL~~rY~e~ 238 (935)
..+|..|+++..-....| .|+ +.||. .-||++.
T Consensus 15 ~~rC~~C~kkvgl~~f~C-rCg-~~FC~---~HR~~e~ 47 (64)
T 1wg2_A 15 NNRCFSCNKKVGVMGFKC-KCG-STFCG---SHRYPEK 47 (64)
T ss_dssp SCSCTTTCCCCTTSCEEC-TTS-CEECS---SSCSSTT
T ss_pred CCcChhhCCcccccCeEe-ecC-CEecc---cCCCccc
Confidence 478999999864446899 799 88975 6788875
No 205
>1fxz_A Glycinin G1; proglycinin, legumin, SEED storage protein, plant protein; 2.80A {Glycine max} SCOP: b.82.1.2 b.82.1.2 PDB: 1ud1_A 1ucx_A
Probab=43.83 E-value=8.7 Score=44.04 Aligned_cols=30 Identities=23% Similarity=0.405 Sum_probs=23.2
Q ss_pred EEeecCceeEecCCCccccccccccceecc
Q 002333 844 FEQKLGEAVFIPAGCPHQVRNLKSCTKVAV 873 (935)
Q Consensus 844 f~Q~lGEAVFIPAGCPHQVRNLkSCIKVAl 873 (935)
..=+.||+|+||||.||-..|.-+--=|++
T Consensus 115 ~~l~~GDvi~iPaG~~h~~~N~G~~~l~~i 144 (476)
T 1fxz_A 115 YNFREGDLIAVPTGVAWWMYNNEDTPVVAV 144 (476)
T ss_dssp EEECTTEEEEECTTCEEEEEECSSSCEEEE
T ss_pred EEEeCCCEEEECCCCcEEEEeCCCCCEEEE
Confidence 344679999999999999999975433443
No 206
>3bu7_A Gentisate 1,2-dioxygenase; cupin domain, oxidoreductase, plasmid; 2.80A {Silicibacter pomeroyi} SCOP: b.82.1.23
Probab=43.75 E-value=10 Score=42.52 Aligned_cols=27 Identities=22% Similarity=0.187 Sum_probs=24.4
Q ss_pred CccceEEEeecCceeEecCCCcccccc
Q 002333 838 GVEPWTFEQKLGEAVFIPAGCPHQVRN 864 (935)
Q Consensus 838 GVEpWtf~Q~lGEAVFIPAGCPHQVRN 864 (935)
-|.+=++.-..||+|+||+|..|+++|
T Consensus 158 ~v~G~~~~~~~GD~i~~P~g~~H~~~N 184 (394)
T 3bu7_A 158 IVDGHKVELGANDFVLTPNGTWHEHGI 184 (394)
T ss_dssp EETTEEEEECTTCEEEECTTCCEEEEE
T ss_pred EECCEEEEEcCCCEEEECcCCCEEEEc
Confidence 455668999999999999999999999
No 207
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}
Probab=43.17 E-value=5 Score=37.86 Aligned_cols=26 Identities=27% Similarity=0.957 Sum_probs=0.0
Q ss_pred cCCCCcccHhHHhhhCCCCChhhhhccCCCCCC
Q 002333 220 KCRTKVYCIQCIKQWYPKMSELDVAEICPFCRR 252 (935)
Q Consensus 220 ~C~r~~FC~~CL~~rY~e~~~edv~~~CP~CRg 252 (935)
.|+ ..|+..||..|... ...||.||.
T Consensus 83 ~C~-H~FH~~CI~~Wl~~------~~~CP~Cr~ 108 (117)
T 4a0k_B 83 VCN-HAFHFHCISRWLKT------RQVCPLDNR 108 (117)
T ss_dssp ---------------------------------
T ss_pred CcC-ceEcHHHHHHHHHc------CCcCCCCCC
Confidence 588 89999999999864 358999986
No 208
>2arc_A ARAC, arabinose operon regulatory protein; transcription factor, carbohydrate binding, coiled-coil, jelly roll; HET: ARA; 1.50A {Escherichia coli} SCOP: b.82.4.1 PDB: 2aac_A* 1xja_A 2ara_A
Probab=42.98 E-value=14 Score=34.05 Aligned_cols=30 Identities=17% Similarity=0.262 Sum_probs=24.0
Q ss_pred hCccceEEEeecCceeEecCCCcccccccc
Q 002333 837 FGVEPWTFEQKLGEAVFIPAGCPHQVRNLK 866 (935)
Q Consensus 837 yGVEpWtf~Q~lGEAVFIPAGCPHQVRNLk 866 (935)
+-|..=++.=..||++|||+|.+|+.++-.
T Consensus 51 ~~i~~~~~~l~~Gd~~~i~p~~~H~~~~~~ 80 (164)
T 2arc_A 51 VKNQGREFVCRPGDILLFPPGEIHHYGRHP 80 (164)
T ss_dssp EEETTEEEEECTTCEEEECTTCCEEEEECT
T ss_pred EEECCEEEEecCCeEEEEcCCCCEEEEeCC
Confidence 344555667789999999999999988764
No 209
>3cjx_A Protein of unknown function with A cupin-like FOL; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 2.60A {Ralstonia eutropha}
Probab=41.64 E-value=11 Score=37.18 Aligned_cols=33 Identities=15% Similarity=0.217 Sum_probs=28.8
Q ss_pred ecCceeEecCCCcccccccc----ccceec-----ccccCcc
Q 002333 847 KLGEAVFIPAGCPHQVRNLK----SCTKVA-----VDFVSPE 879 (935)
Q Consensus 847 ~lGEAVFIPAGCPHQVRNLk----SCIKVA-----lDFVSPE 879 (935)
..||.+++|+|.+|++.+.. -||-++ +-|+.|.
T Consensus 85 ~aGd~~~~P~g~~H~~~a~~~~~~gci~l~v~~GpL~~~~~~ 126 (165)
T 3cjx_A 85 TAGCYLYEPGGSIHQFNTPRDNEGQTEVIFMLSGCNVNFTQD 126 (165)
T ss_dssp ETTEEEEECTTCEECEECCTTCSSCEEEEEEEESCEEEECTT
T ss_pred CCCeEEEeCCCCceeeEeCCCCCCCcEEEEEEeccceecCCC
Confidence 58999999999999999998 897777 6777775
No 210
>1vfy_A Phosphatidylinositol-3-phosphate binding FYVE domain of protein VPS27; endosome maturation, intracellular trafficking; 1.15A {Saccharomyces cerevisiae} SCOP: g.50.1.1
Probab=40.92 E-value=9.1 Score=32.91 Aligned_cols=33 Identities=21% Similarity=0.396 Sum_probs=27.6
Q ss_pred CcccccccCC--CCceEecCcCCCCcccHhHHhhhC
Q 002333 202 IKCHQCMKSE--RKYVVPCGKCRTKVYCIQCIKQWY 235 (935)
Q Consensus 202 ~~CHQCrqk~--~~~~v~C~~C~r~~FC~~CL~~rY 235 (935)
..|..|+++- ..+.-.|+.|+ ..||..|..++.
T Consensus 12 ~~C~~C~~~F~~~~RrHHCR~CG-~v~C~~Cs~~~~ 46 (73)
T 1vfy_A 12 DACMICSKKFSLLNRKHHCRSCG-GVFCQEHSSNSI 46 (73)
T ss_dssp SBCTTTCCBCBTTBCCEECTTTC-CEECGGGSCEEE
T ss_pred CcccCCCCccCCccccccCCCCC-EEEcccccCCeE
Confidence 5799999875 35678999999 999999998664
No 211
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=40.67 E-value=7.7 Score=39.63 Aligned_cols=39 Identities=26% Similarity=0.561 Sum_probs=30.8
Q ss_pred hhccCCCCcccccccCC--CCceEecCcCCCCcccHhHHhhhCC
Q 002333 195 KEKELERIKCHQCMKSE--RKYVVPCGKCRTKVYCIQCIKQWYP 236 (935)
Q Consensus 195 k~~~g~~~~CHQCrqk~--~~~~v~C~~C~r~~FC~~CL~~rY~ 236 (935)
.|... ..|+.|+++= ..+.-.|+.|+ ..||..|...+.+
T Consensus 157 ~W~~~--~~C~~C~~~F~~~~rrhhCr~CG-~v~C~~Cs~~~~~ 197 (220)
T 1dvp_A 157 NWADG--RVCHRCRVEFTFTNRKHHCRNCG-QVFCGQCTAKQCP 197 (220)
T ss_dssp CCCCC--SBCTTTCCBCCSSSCCEECTTTC-CEECSTTSCEEEE
T ss_pred cCCCC--CccCCCCCccCCcccccccCCcC-CEEChHHhCCeee
Confidence 44443 7999998765 35678999999 9999999987753
No 212
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}
Probab=39.86 E-value=12 Score=32.78 Aligned_cols=43 Identities=14% Similarity=-0.007 Sum_probs=32.9
Q ss_pred CCcccccccCCCCceEecCcCCCCcccHhHHhhhCCCCChhhhhccCCCCCC
Q 002333 201 RIKCHQCMKSERKYVVPCGKCRTKVYCIQCIKQWYPKMSELDVAEICPFCRR 252 (935)
Q Consensus 201 ~~~CHQCrqk~~~~~v~C~~C~r~~FC~~CL~~rY~e~~~edv~~~CP~CRg 252 (935)
...|--|..--.+.++- .|+ ..||..||..|..+ ...||+|+.
T Consensus 14 ~~~CpI~~~~m~dPV~~--~cG-htf~r~~I~~~l~~------~~~cP~~~~ 56 (85)
T 2kr4_A 14 EFRDPLMDTLMTDPVRL--PSG-TVMDRSIILRHLLN------SPTDPFNRQ 56 (85)
T ss_dssp TTBCTTTCSBCSSEEEC--TTS-CEEEHHHHHHHHHH------CSBCTTTCC
T ss_pred heECcccCchhcCCeEC--CCC-CEECHHHHHHHHhc------CCCCCCCcC
Confidence 47788887766655553 488 88999999999852 368999986
No 213
>1x4w_A Hypothetical protein FLJ13222; ZF-AN1 domain, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=39.54 E-value=12 Score=32.49 Aligned_cols=34 Identities=26% Similarity=0.723 Sum_probs=25.2
Q ss_pred CCCcccccccCCCCc---eEecCcCCCCcccHhHHhhhCCCC
Q 002333 200 ERIKCHQCMKSERKY---VVPCGKCRTKVYCIQCIKQWYPKM 238 (935)
Q Consensus 200 ~~~~CHQCrqk~~~~---~v~C~~C~r~~FC~~CL~~rY~e~ 238 (935)
...+|..|+++..-. ...| .|+ ..||. .-||++.
T Consensus 14 ~~~rC~~C~kk~gL~~~egf~C-rCg-~~FC~---~HRy~e~ 50 (67)
T 1x4w_A 14 SRRRCFQCQTKLELVQQELGSC-RCG-YVFCM---LHRLPEQ 50 (67)
T ss_dssp CTTBCSSSCCBCCHHHHHHHCC-SSS-CCCCT---TTCSTGG
T ss_pred cCCcchhhCCeecccccCceEe-cCC-CEehh---ccCCccc
Confidence 347899999987622 1589 899 89976 6788764
No 214
>2y0o_A Probable D-lyxose ketol-isomerase; carbohydrate metabolism, metal-binding, sugar ISO stress response; HET: MSE; 1.23A {Bacillus subtilis subsp}
Probab=39.38 E-value=11 Score=37.91 Aligned_cols=41 Identities=22% Similarity=0.308 Sum_probs=31.7
Q ss_pred ceE-EEeecCceeEecCCCccccccccccceecccccCccchHH
Q 002333 841 PWT-FEQKLGEAVFIPAGCPHQVRNLKSCTKVAVDFVSPENVDE 883 (935)
Q Consensus 841 pWt-f~Q~lGEAVFIPAGCPHQVRNLkSCIKVAlDFVSPEnV~e 883 (935)
+|+ ++..+||.|.||.|.+|...|.... |.++=||+-|-++
T Consensus 117 a~~~i~L~pGesvtIppg~~H~f~ageeg--vli~EvSt~~dDe 158 (175)
T 2y0o_A 117 VWHEIELEPGGQYTIPPNTKHWFQAGEEG--AVVTEMSSTSTDK 158 (175)
T ss_dssp CCEEEEECTTCEEEECTTCCEEEEEEEEE--EEEEEEEECCCGG
T ss_pred CCcEEEECCCCEEEECCCCcEEEEeCCCC--EEEEEEeCCCCCC
Confidence 344 5899999999999999999996554 6666677665544
No 215
>1wen_A Inhibitor of growth family, member 4; ING1-like protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.50.1.2 PDB: 1wes_A
Probab=38.93 E-value=17 Score=31.42 Aligned_cols=47 Identities=19% Similarity=0.579 Sum_probs=33.6
Q ss_pred CCCcccccccCCCCceEecCc--CCCCcccHhHHhhhCCCCChh-hhhccCCCCCC
Q 002333 200 ERIKCHQCMKSERKYVVPCGK--CRTKVYCIQCIKQWYPKMSEL-DVAEICPFCRR 252 (935)
Q Consensus 200 ~~~~CHQCrqk~~~~~v~C~~--C~r~~FC~~CL~~rY~e~~~e-dv~~~CP~CRg 252 (935)
+...| -|++...+.++.|-+ |.+.-|=..|+. ++.. .-.|.||.|+.
T Consensus 15 ~~~~C-~C~~~~~g~MI~CD~~~C~~~wfH~~Cvg-----l~~~p~g~w~Cp~C~~ 64 (71)
T 1wen_A 15 EPTYC-LCHQVSYGEMIGCDNPDCSIEWFHFACVG-----LTTKPRGKWFCPRCSQ 64 (71)
T ss_dssp SCCCS-TTCCCSCSSEECCSCSSCSCCCEETTTTT-----CSSCCSSCCCCTTTSS
T ss_pred CCCEE-ECCCCCCCCEeEeeCCCCCCccEecccCC-----cCcCCCCCEECCCCCc
Confidence 45788 699987788999999 775556666665 2222 24699999964
No 216
>1wfh_A Zinc finger (AN1-like) family protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: g.80.1.1
Probab=38.35 E-value=21 Score=30.82 Aligned_cols=34 Identities=24% Similarity=0.630 Sum_probs=26.4
Q ss_pred CCCcccccccCCCCceEecCcCCCCcccHhHHhhhCCCC
Q 002333 200 ERIKCHQCMKSERKYVVPCGKCRTKVYCIQCIKQWYPKM 238 (935)
Q Consensus 200 ~~~~CHQCrqk~~~~~v~C~~C~r~~FC~~CL~~rY~e~ 238 (935)
...+|..|+++.--....| .|+ ..||. .-||++.
T Consensus 14 ~~~rC~~C~kkvgl~~f~C-rCg-~~FC~---~HRy~e~ 47 (64)
T 1wfh_A 14 RPNRCTVCRKRVGLTGFMC-RCG-TTFCG---SHRYPEV 47 (64)
T ss_dssp SCCCCTTTCCCCCTTCEEC-SSS-CEECT---TTCSTTT
T ss_pred cCCcChhhCCccCccCEEe-ecC-CEecc---ccCCccc
Confidence 4478999999865446899 699 88975 6788875
No 217
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=38.05 E-value=12 Score=34.68 Aligned_cols=46 Identities=20% Similarity=0.470 Sum_probs=32.7
Q ss_pred CCceEecCcCCCCcccHhHHhhhCCCCC--hhhhhccCCCCCCcccCcccccc
Q 002333 212 RKYVVPCGKCRTKVYCIQCIKQWYPKMS--ELDVAEICPFCRRNCNCSVCLHT 262 (935)
Q Consensus 212 ~~~~v~C~~C~r~~FC~~CL~~rY~e~~--~edv~~~CP~CRg~CNCs~Clr~ 262 (935)
.+.++.|..|. ..|=..||.... +++ .....|.||.|+ .|.+|.+.
T Consensus 23 ~~~Ll~C~~C~-~~~H~~Cl~~~~-~~~~~~~~~~W~C~~C~---~C~vC~~~ 70 (112)
T 3v43_A 23 PEELISCADCG-NSGHPSCLKFSP-ELTVRVKALRWQCIECK---TCSSCRDQ 70 (112)
T ss_dssp CCCCEECTTTC-CEECHHHHTCCH-HHHHHHHTSCCCCTTTC---CBTTTCCC
T ss_pred chhceEhhhcC-CCCCCchhcCCH-HHHHHhhccccccccCC---ccccccCc
Confidence 45799999999 777788986321 111 124569999998 58888765
No 218
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=37.92 E-value=13 Score=38.44 Aligned_cols=33 Identities=21% Similarity=0.667 Sum_probs=27.8
Q ss_pred CcccccccCC--CCceEecCcCCCCcccHhHHhhhC
Q 002333 202 IKCHQCMKSE--RKYVVPCGKCRTKVYCIQCIKQWY 235 (935)
Q Consensus 202 ~~CHQCrqk~--~~~~v~C~~C~r~~FC~~CL~~rY 235 (935)
..|..|+++= ..+.-.|++|+ ..||..|..++-
T Consensus 165 ~~C~~C~~~F~~~~RrhHCR~CG-~v~C~~Cs~~~~ 199 (226)
T 3zyq_A 165 EECHRCRVQFGVMTRKHHCRACG-QIFCGKCSSKYS 199 (226)
T ss_dssp SBCTTTCCBCBTTBCCEECTTTC-CEECTTTCCEEE
T ss_pred CCCcCcCCCCCccccccccCCCc-CEeChhhcCCcc
Confidence 6899999765 35678999999 999999998764
No 219
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=37.43 E-value=68 Score=32.96 Aligned_cols=61 Identities=13% Similarity=0.324 Sum_probs=41.3
Q ss_pred hhhhHhhhhhcccCCCcccccccccCCCCc------ccccCcccccccc--ccccCcCCcccchhchHH
Q 002333 301 TQEIEFEASIQRVHSSKVGVSETLCGNDER------VYCNHCATSIIDL--HRSCPKCSYELCLTCCKE 361 (935)
Q Consensus 301 ~~E~EiEAkIqG~~~sei~I~~a~~~~DER------vyCDnCkTSI~D~--HRSC~~CsyDLCL~CC~E 361 (935)
+.+.+-+=|-+|+...+++...+.+....- -.|-.|.++.-=+ -.+|.+|+.-+|-.|+..
T Consensus 129 i~~~Y~~Lk~~G~~FP~~~~~damf~~~~~p~W~~~~~C~~C~~~F~~~~RrhHCR~CG~v~C~~Cs~~ 197 (226)
T 3zyq_A 129 VQDTYQIMKVEGHVFPEFKESDAMFAAERAPDWVDAEECHRCRVQFGVMTRKHHCRACGQIFCGKCSSK 197 (226)
T ss_dssp HHHHHHHHHHHTCCCCCCCGGGGCCCCCCCCCCCCCSBCTTTCCBCBTTBCCEECTTTCCEECTTTCCE
T ss_pred HHHHHHHHHhcCCCcccchhHHHhhhcccccccccCCCCcCcCCCCCccccccccCCCcCEeChhhcCC
Confidence 456666667788887666655554432221 2799998754323 358999999999999874
No 220
>1vq8_T 50S ribosomal protein L24P; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: b.34.5.1 PDB: 1vq4_T* 1vq5_T* 1vq6_T* 1vq7_T* 1s72_T* 1vq9_T* 1vqk_T* 1vql_T* 1vqm_T* 1vqn_T* 1vqo_T* 1vqp_T* 1yhq_T* 1yi2_T* 1yij_T* 1yit_T* 1yj9_T* 1yjn_T* 1yjw_T* 2otj_T* ...
Probab=37.00 E-value=10 Score=36.34 Aligned_cols=42 Identities=21% Similarity=0.362 Sum_probs=36.8
Q ss_pred cCCcccCccccCHHHHHHHHHHhCccceEEEeecCceeEecCCC
Q 002333 815 IHPIHDQCFYLSSEHKKKLKEEFGVEPWTFEQKLGEAVFIPAGC 858 (935)
Q Consensus 815 ~dPIHDQ~fYLt~ehk~rLkEEyGVEpWtf~Q~lGEAVFIPAGC 858 (935)
.=|.|...-.+.+.+-+.|+++|||..|.| +-||-|.|=||=
T Consensus 14 ~Ap~h~rrk~msa~LskeLr~ky~vr~~~I--kkGD~V~Vi~G~ 55 (120)
T 1vq8_T 14 RAPLHERHKQVRATLSADLREEYGQRNVRV--NAGDTVEVLRGD 55 (120)
T ss_dssp TCCGGGSGGGGEEEECHHHHHHHTCSEEEC--CTTCEEEECSST
T ss_pred cCCcchhhheeeCcCCHHHHHhhccccccc--cCCCEEEEEecC
Confidence 358899999999999899999999999875 679999999984
No 221
>1uij_A Beta subunit of beta conglycinin; double-stranded beta helix, SEED storage protein, sugar binding protein; 2.50A {Glycine max} SCOP: b.82.1.2 b.82.1.2 PDB: 1ipk_A 1ipj_A*
Probab=36.73 E-value=12 Score=42.12 Aligned_cols=46 Identities=22% Similarity=0.247 Sum_probs=32.4
Q ss_pred cCCcccCccccCHHHHHHHHHHhCc----cceEEEeecCceeEecCCCccccccc
Q 002333 815 IHPIHDQCFYLSSEHKKKLKEEFGV----EPWTFEQKLGEAVFIPAGCPHQVRNL 865 (935)
Q Consensus 815 ~dPIHDQ~fYLt~ehk~rLkEEyGV----EpWtf~Q~lGEAVFIPAGCPHQVRNL 865 (935)
+||=.++.+|+-.-.- .+|| ...++.=..||+++||+|.+|-+.|.
T Consensus 65 Hh~~a~E~~yVl~G~g-----~v~~v~~~~~~~~~l~~GDv~~iP~G~~H~~~N~ 114 (416)
T 1uij_A 65 HHADADFLLFVLSGRA-----ILTLVNNDDRDSYNLHPGDAQRIPAGTTYYLVNP 114 (416)
T ss_dssp EEESEEEEEEEEESCE-----EEEEECSSCEEEEEECTTEEEEECTTCEEEEEEC
T ss_pred ccCCCceEEEEEeeEE-----EEEEEECCCCeEEEecCCCEEEECCCCeEEEEec
Confidence 3555566666544321 1333 35567778899999999999999999
No 222
>1fxz_A Glycinin G1; proglycinin, legumin, SEED storage protein, plant protein; 2.80A {Glycine max} SCOP: b.82.1.2 b.82.1.2 PDB: 1ud1_A 1ucx_A
Probab=36.55 E-value=15 Score=42.23 Aligned_cols=85 Identities=11% Similarity=0.035 Sum_probs=46.0
Q ss_pred CcccCCcccCccccCHHHHH-HHHHHhCccceEEEeecCceeEecCCCccccccccccceecccccCccchHHHHHH---
Q 002333 812 EQVIHPIHDQCFYLSSEHKK-KLKEEFGVEPWTFEQKLGEAVFIPAGCPHQVRNLKSCTKVAVDFVSPENVDECLRL--- 887 (935)
Q Consensus 812 ~~v~dPIHDQ~fYLt~ehk~-rLkEEyGVEpWtf~Q~lGEAVFIPAGCPHQVRNLkSCIKVAlDFVSPEnV~eC~rL--- 887 (935)
....||-.++.+|+..-.-+ .+-.+-|-+-.+..=..||.++||+|.||.+.|...-+.+..=|+||.. ..- .|
T Consensus 352 ~pH~Hp~a~Ei~yVl~G~~~v~v~~~~G~~~~~~~l~~GDv~viP~G~~H~~~ng~~~l~~l~f~~s~~p-~~~-~laG~ 429 (476)
T 1fxz_A 352 VPHYNLNANSIIYALNGRALIQVVNCNGERVFDGELQEGRVLIVPQNFVVAARSQSDNFEYVSFKTNDTP-MIG-TLAGA 429 (476)
T ss_dssp EEEEETTCCEEEEEEESEEEEEEECTTSCEEEEEEEETTCEEEECTTCEEEEEECSTTEEEEEEESSSSC-CEE-ESSST
T ss_pred cceECCCCCEEEEEEeCEEEEEEEecCCCEEeeeEEcCCCEEEECCCCeEEEEeCCCCEEEEEEECCCCC-cee-Eccch
Confidence 34567766676666543211 1111122222333357899999999999999996444444443445522 111 22
Q ss_pred HHHhhcCCchh
Q 002333 888 TKEFRLLPKNH 898 (935)
Q Consensus 888 teEfR~Lp~~H 898 (935)
+.=|+.||.+-
T Consensus 430 ~s~~~~~p~~V 440 (476)
T 1fxz_A 430 NSLLNALPEEV 440 (476)
T ss_dssp TCTGGGSCHHH
T ss_pred hHHHHhCCHHH
Confidence 34566666543
No 223
>2ri7_A Nucleosome-remodeling factor subunit BPTF; zinc finger, alpha-helical bundle, dimethyl-lysine, bromodom chromatin regulator, metal-binding, nucleus; HET: MLY; 1.45A {Homo sapiens} PDB: 2fsa_A* 2f6n_A 2f6j_A* 3qzv_A* 3uv2_A* 3qzt_A* 3qzs_A* 2fui_A 2fuu_A*
Probab=35.78 E-value=8.8 Score=37.54 Aligned_cols=47 Identities=23% Similarity=0.721 Sum_probs=35.3
Q ss_pred CCCcccccccCC--CCceEecCcCCCCcccHhHHhhhCCCCChh----hhhccCCCCCCc
Q 002333 200 ERIKCHQCMKSE--RKYVVPCGKCRTKVYCIQCIKQWYPKMSEL----DVAEICPFCRRN 253 (935)
Q Consensus 200 ~~~~CHQCrqk~--~~~~v~C~~C~r~~FC~~CL~~rY~e~~~e----dv~~~CP~CRg~ 253 (935)
+...| .|++.. .+.++.|-.|. .-|-..|+. ++.. .-.|.||.|+..
T Consensus 7 ~~~~C-~C~~~~~~~~~mi~Cd~C~-~WfH~~Cv~-----~~~~~~~~~~~~~C~~C~~~ 59 (174)
T 2ri7_A 7 TKLYC-ICKTPEDESKFYIGCDRCQ-NWYHGRCVG-----ILQSEAELIDEYVCPQCQST 59 (174)
T ss_dssp CCEET-TTTEECCTTSCEEECTTTC-CEEEHHHHT-----CCHHHHTTCSSCCCHHHHHH
T ss_pred CCcEe-eCCCCCCCCCCEeECCCCC-chhChhhcC-----CchhhccCccCeecCCCcch
Confidence 45788 899863 46699999999 889999984 3332 236999999763
No 224
>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=34.69 E-value=11 Score=33.09 Aligned_cols=51 Identities=22% Similarity=0.582 Sum_probs=33.6
Q ss_pred CCcccccccCCCCc-eEecCcCCCCcccHhHHhhhCCCCChhh--hhccCCC--CCC
Q 002333 201 RIKCHQCMKSERKY-VVPCGKCRTKVYCIQCIKQWYPKMSELD--VAEICPF--CRR 252 (935)
Q Consensus 201 ~~~CHQCrqk~~~~-~v~C~~C~r~~FC~~CL~~rY~e~~~ed--v~~~CP~--CRg 252 (935)
..+|--|...-... .+.-..|+ ..||..||..+......+. ....||. |+.
T Consensus 5 ~~~C~IC~~~~~~~~~~~l~~Cg-H~FC~~Cl~~~~~~~i~~g~~~~i~CP~~~C~~ 60 (94)
T 1wim_A 5 SSGCKLCLGEYPVEQMTTIAQCQ-CIFCTLCLKQYVELLIKEGLETAISCPDAACPK 60 (94)
T ss_dssp BCCCSSSCCCCBGGGEEEETTTT-EEEEHHHHHHHHHHHHHHCSCCCEECSCTTCSS
T ss_pred CcCCcccCcccccccceEcCCCC-CcccHHHHHHHHHHHhhcCCcccccCccccCCC
Confidence 35788887654333 33444699 9999999999875332222 2478998 765
No 225
>2yt5_A Metal-response element-binding transcription factor 2; zinc-regulated factor 1, ZIRF1, metal-response element DNA-binding protein M96; NMR {Mus musculus}
Probab=34.65 E-value=5 Score=33.47 Aligned_cols=49 Identities=22% Similarity=0.432 Sum_probs=34.1
Q ss_pred CCCCcccccccCC---CCceEecCcCCCCcccHhHHhhhCCCCChh----hhhccCCCCC
Q 002333 199 LERIKCHQCMKSE---RKYVVPCGKCRTKVYCIQCIKQWYPKMSEL----DVAEICPFCR 251 (935)
Q Consensus 199 g~~~~CHQCrqk~---~~~~v~C~~C~r~~FC~~CL~~rY~e~~~e----dv~~~CP~CR 251 (935)
++...|..|++.. .+.++.|-.|. ..|=..|+.- .++.+ +-.|.||.|.
T Consensus 4 ~~~~~C~vC~~~~~~~~~~ll~Cd~C~-~~~H~~C~~p---~l~~~~~~p~~~W~C~~C~ 59 (66)
T 2yt5_A 4 GSSGVCTICQEEYSEAPNEMVICDKCG-QGYHQLCHTP---HIDSSVIDSDEKWLCRQCV 59 (66)
T ss_dssp CCCCCBSSSCCCCCBTTBCEEECSSSC-CEEETTTSSS---CCCHHHHHSSCCCCCHHHH
T ss_pred CCCCCCCCCCCCCCCCCCCEEECCCCC-hHHHhhhCCC---cccccccCCCCCEECCCCc
Confidence 4568899999874 37899999999 5555555543 33332 2459999885
No 226
>3j21_U 50S ribosomal protein L24P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=33.89 E-value=12 Score=35.77 Aligned_cols=40 Identities=25% Similarity=0.462 Sum_probs=35.8
Q ss_pred CCcccCccccCHHHHHHHHHHhCccceEEEeecCceeEecCC
Q 002333 816 HPIHDQCFYLSSEHKKKLKEEFGVEPWTFEQKLGEAVFIPAG 857 (935)
Q Consensus 816 dPIHDQ~fYLt~ehk~rLkEEyGVEpWtf~Q~lGEAVFIPAG 857 (935)
=|.|...-++.+.+=+.|+++|||.-|.| +-||-|.|=+|
T Consensus 18 Ap~h~r~k~msa~LSkeLR~ky~~r~~~I--kkGD~V~Vi~G 57 (121)
T 3j21_U 18 APLHVRQKLMSAPLSRELREKYKVRNLPV--RVGDKVRIMRG 57 (121)
T ss_dssp CCTTGGGGGSEEEBCHHHHHHTCCSEEEC--CSSSEEEECSS
T ss_pred CCcchhhhhhcCcCCHHHHHHhCCccccc--ccCCEEEEeec
Confidence 47888888888888889999999999988 57999999998
No 227
>3kv5_D JMJC domain-containing histone demethylation protein 1D; epigenetics, histone CODE, jumonji lysine demethylase, metal-binding, zinc, zinc-finger; HET: OGA; 2.39A {Homo sapiens} PDB: 3kv6_A*
Probab=33.82 E-value=17 Score=41.90 Aligned_cols=57 Identities=18% Similarity=0.484 Sum_probs=40.3
Q ss_pred CCCcccccccCC--CCceEecCcCCCCcccHhHHhhhCCCCChhh----hhccCCCCCCcccCccccccC
Q 002333 200 ERIKCHQCMKSE--RKYVVPCGKCRTKVYCIQCIKQWYPKMSELD----VAEICPFCRRNCNCSVCLHTS 263 (935)
Q Consensus 200 ~~~~CHQCrqk~--~~~~v~C~~C~r~~FC~~CL~~rY~e~~~ed----v~~~CP~CRg~CNCs~Clr~~ 263 (935)
+...| -|++.. .+.++.|-.|. .-|=+.|+. ++.++ -.|.||.|+..-.-+.-.+++
T Consensus 36 ~~~yC-~C~~~~d~~~~MIqCd~C~-~WfH~~Cvg-----l~~~~~~~~~~~~C~~C~~~~~~~~~k~~~ 98 (488)
T 3kv5_D 36 PPVYC-VCRQPYDVNRFMIECDICK-DWFHGSCVG-----VEEHHAVDIDLYHCPNCAVLHGSSLMKKRR 98 (488)
T ss_dssp CCEET-TTTEECCTTSCEEEBTTTC-CEEEHHHHT-----CCGGGGGGEEEBCCHHHHHHHCSCEECCCC
T ss_pred CCeEE-eCCCcCCCCCCeEEccCCC-CceeeeecC-----cCcccccCCCEEECCCCcCCcCcchhcccc
Confidence 44678 788864 57799999999 888888884 33332 359999998766555554444
No 228
>3mpx_A FYVE, rhogef and PH domain-containing protein 5; structural genomics consortium, DH domain, SGC, L binding protein; 2.80A {Homo sapiens}
Probab=33.38 E-value=8.9 Score=42.13 Aligned_cols=36 Identities=25% Similarity=0.586 Sum_probs=0.0
Q ss_pred CCCcccccccCC--CCceEecCcCCCCcccHhHHhhhCC
Q 002333 200 ERIKCHQCMKSE--RKYVVPCGKCRTKVYCIQCIKQWYP 236 (935)
Q Consensus 200 ~~~~CHQCrqk~--~~~~v~C~~C~r~~FC~~CL~~rY~ 236 (935)
....|..|+..- ..+...|+.|+ ..||..|..++.+
T Consensus 374 ~~~~c~~c~~~f~~~~r~h~Cr~Cg-~~~C~~Cs~~~~~ 411 (434)
T 3mpx_A 374 HVMMCMNCGCDFSLTLRRHHCHACG-KIVCRNCSRNKYP 411 (434)
T ss_dssp ---------------------------------------
T ss_pred cCCcCCCcCCCCCCcchhhhcccCc-CEeehhhCCCeee
Confidence 457899999865 24568999999 8999999998875
No 229
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=33.18 E-value=33 Score=35.81 Aligned_cols=50 Identities=16% Similarity=0.429 Sum_probs=38.5
Q ss_pred cCCCCcccccccCCCCceEecCcCCCCcccHhHHhhhCCCCChhhhhccCCCCCCc
Q 002333 198 ELERIKCHQCMKSERKYVVPCGKCRTKVYCIQCIKQWYPKMSELDVAEICPFCRRN 253 (935)
Q Consensus 198 ~g~~~~CHQCrqk~~~~~v~C~~C~r~~FC~~CL~~rY~e~~~edv~~~CP~CRg~ 253 (935)
.+....|..|+.--. .-..|.+|+ .+|=..|+.+|+... ..-.||.|...
T Consensus 177 ~~~i~~C~iC~~iv~-~g~~C~~C~-~~~H~~C~~~~~~~~----~~~~CP~C~~~ 226 (238)
T 3nw0_A 177 PDAVKICNICHSLLI-QGQSCETCG-IRMHLPCVAKYFQSN----AEPRCPHCNDY 226 (238)
T ss_dssp TTTCCBCTTTCSBCS-SCEECSSSC-CEECHHHHHHHTTTC----SSCBCTTTCCB
T ss_pred CCCCCcCcchhhHHh-CCcccCccC-hHHHHHHHHHHHHhC----CCCCCCCCCCC
Confidence 345789999997765 357999999 889999999998532 24589988763
No 230
>2ea7_A 7S globulin-1; beta barrel, cupin superfamily, plant protein; 1.80A {Vigna angularis} PDB: 2eaa_A* 2cv6_A 1uik_A
Probab=31.57 E-value=19 Score=40.66 Aligned_cols=26 Identities=27% Similarity=0.254 Sum_probs=23.1
Q ss_pred ceEEEeecCceeEecCCCcccccccc
Q 002333 841 PWTFEQKLGEAVFIPAGCPHQVRNLK 866 (935)
Q Consensus 841 pWtf~Q~lGEAVFIPAGCPHQVRNLk 866 (935)
..++.=..||+++||+|.+|.+.|.-
T Consensus 102 ~~~~~l~~GDv~~iP~G~~H~~~N~g 127 (434)
T 2ea7_A 102 RDSYILEQGHAQKIPAGTTFFLVNPD 127 (434)
T ss_dssp EEEEEEETTEEEEECTTCEEEEEECC
T ss_pred CEEEEeCCCCEEEECCCccEEEEeCC
Confidence 45777788999999999999999995
No 231
>3c3v_A Arachin ARAH3 isoform; peanut allergen, allergy, glycinin; 1.73A {Arachis hypogaea}
Probab=31.38 E-value=20 Score=41.66 Aligned_cols=102 Identities=9% Similarity=-0.010 Sum_probs=55.8
Q ss_pred CCCceEEEeecCCChhHHHHHHHHHHHhhccccCCCCCcccCCcccCccccCHHHHH-HHHHHhCccceEEEeecCceeE
Q 002333 775 ESGGALWDIFRRQDVPKLEAYLRKHFKEFRHVYCSPVEQVIHPIHDQCFYLSSEHKK-KLKEEFGVEPWTFEQKLGEAVF 853 (935)
Q Consensus 775 ~~~GAlWDIFRreDvpKLreyL~kh~~Ef~h~~~~pv~~v~dPIHDQ~fYLt~ehk~-rLkEEyGVEpWtf~Q~lGEAVF 853 (935)
..+|.+.-+... +.|-|.. |.--...+....+.-+....||-.++.+|+..-.-+ .+-.+-|-+-.+..=..||.++
T Consensus 351 ~~gG~v~~~~~~-~fP~L~~-l~is~a~v~L~PG~~~~pH~Hp~a~Ei~yVl~G~~~v~vv~~~G~~~~~~~l~~GDv~v 428 (510)
T 3c3v_A 351 PQAGSLKTANEL-NLLILRW-LGLSAEYGNLYRNALFVPHYNTNAHSIIYALRGRAHVQVVDSNGNRVYDEELQEGHVLV 428 (510)
T ss_dssp TTTEEEEEECTT-TSTTHHH-HTCEEEEEEEETTCEEEEEEESSCCEEEEEEESEEEEEEECTTSCEEEEEEEETTCEEE
T ss_pred CCCeEEEEeccc-cCccccc-ceEEEEEEEecCCceecceECCCCCEEEEEEeCEEEEEEEeCCCCEEEeEEEcCCcEEE
Confidence 457777777764 5777732 110001111122223345678877887776543211 1111122222333357899999
Q ss_pred ecCCCccccccccccceecccccCc
Q 002333 854 IPAGCPHQVRNLKSCTKVAVDFVSP 878 (935)
Q Consensus 854 IPAGCPHQVRNLkSCIKVAlDFVSP 878 (935)
||+|.||-+.|...-+.+..=|+|+
T Consensus 429 iP~G~~H~~~Ng~e~l~~l~f~~s~ 453 (510)
T 3c3v_A 429 VPQNFAVAGKSQSDNFEYVAFKTDS 453 (510)
T ss_dssp ECTTCEEEEEECSSEEEEEEEESSS
T ss_pred ECCCCeEEEEeCCCCEEEEEEECCC
Confidence 9999999999964444444433344
No 232
>1v5n_A PDI-like hypothetical protein AT1G60420; DC1 domain, zinc binding domain, PDI-like protein, structural genomics; NMR {Arabidopsis thaliana} SCOP: g.49.1.3
Probab=30.70 E-value=17 Score=32.59 Aligned_cols=31 Identities=19% Similarity=0.564 Sum_probs=28.3
Q ss_pred cccccCccccccccccccCcCCcccchhchH
Q 002333 330 RVYCNHCATSIIDLHRSCPKCSYELCLTCCK 360 (935)
Q Consensus 330 RvyCDnCkTSI~D~HRSC~~CsyDLCL~CC~ 360 (935)
...||.|...+..+.-.|..|.|+|=+.|-.
T Consensus 47 ~~~C~~C~~~~~~~~Y~C~~C~f~lH~~Ca~ 77 (89)
T 1v5n_A 47 VYTCDKCEEEGTIWSYHCDECDFDLHAKCAL 77 (89)
T ss_dssp SCCCTTTSCCCCSCEEECTTTCCCCCHHHHH
T ss_pred CeEeCCCCCcCCCcEEEcCCCCCeEcHHhcC
Confidence 4679999999999999999999999999974
No 233
>4gne_A Histone-lysine N-methyltransferase NSD3; zinc finger, transcription, nuclear protein, transf nuclear protein complex; 1.47A {Homo sapiens} PDB: 4gnd_A 4gnf_A 4gng_A*
Probab=30.14 E-value=30 Score=32.24 Aligned_cols=58 Identities=24% Similarity=0.586 Sum_probs=40.1
Q ss_pred hhccCCCCcccccccCCCCceEecC--cCCCCcccHhHHhhhCCCCChhhhhccCCCCCCcccCccccccC
Q 002333 195 KEKELERIKCHQCMKSERKYVVPCG--KCRTKVYCIQCIKQWYPKMSELDVAEICPFCRRNCNCSVCLHTS 263 (935)
Q Consensus 195 k~~~g~~~~CHQCrqk~~~~~v~C~--~C~r~~FC~~CL~~rY~e~~~edv~~~CP~CRg~CNCs~Clr~~ 263 (935)
+.+..+...|..|+. .+.++.|- .|. ..|=..||. -.+.. +-.|.||.| .|..|-+..
T Consensus 9 ~~~~~~~~~C~~C~~--~G~ll~CD~~~Cp-~~fH~~Cl~--L~~~P--~g~W~Cp~c----~C~~C~k~~ 68 (107)
T 4gne_A 9 EPKQMHEDYCFQCGD--GGELVMCDKKDCP-KAYHLLCLN--LTQPP--YGKWECPWH----QCDECSSAA 68 (107)
T ss_dssp -CCCSSCSSCTTTCC--CSEEEECCSTTCC-CEECTGGGT--CSSCC--SSCCCCGGG----BCTTTCSBC
T ss_pred CCcCCCCCCCCcCCC--CCcEeEECCCCCC-cccccccCc--CCcCC--CCCEECCCC----CCCcCCCCC
Confidence 334456788999984 46799999 699 577788886 22221 346999986 577777654
No 234
>1xwh_A Autoimmune regulator; PHD domain, Zn binding domain, apeced, nucleosome, E3 ligase, transcription; NMR {Homo sapiens} PDB: 2ke1_A 2kft_A
Probab=29.69 E-value=13 Score=31.37 Aligned_cols=48 Identities=15% Similarity=0.464 Sum_probs=34.4
Q ss_pred CCCCcccccccCCCCceEecCcCCCCcccHhHHhhhCCCCChhhhhccCCCCC
Q 002333 199 LERIKCHQCMKSERKYVVPCGKCRTKVYCIQCIKQWYPKMSELDVAEICPFCR 251 (935)
Q Consensus 199 g~~~~CHQCrqk~~~~~v~C~~C~r~~FC~~CL~~rY~e~~~edv~~~CP~CR 251 (935)
.+...|..|... +.++.|-.|. ..|=..||..-...++ .-.|.||.|.
T Consensus 6 ~~~~~C~vC~~~--g~ll~CD~C~-~~fH~~Cl~ppl~~~P--~g~W~C~~C~ 53 (66)
T 1xwh_A 6 KNEDECAVCRDG--GELICCDGCP-RAFHLACLSPPLREIP--SGTWRCSSCL 53 (66)
T ss_dssp SCCCSBSSSSCC--SSCEECSSCC-CEECTTTSSSCCSSCC--SSCCCCHHHH
T ss_pred CCCCCCccCCCC--CCEEEcCCCC-hhhcccccCCCcCcCC--CCCeECcccc
Confidence 345789999875 5699999999 6787888874332222 2479999885
No 235
>2cav_A Protein (canavalin); vicilin, 7S SEED protein, domain duplication, swiss roll, PL protein; 2.00A {Canavalia ensiformis} SCOP: b.82.1.2 b.82.1.2 PDB: 2cau_A 1cau_B 1cav_B 1caw_B 1cax_B
Probab=29.23 E-value=25 Score=39.94 Aligned_cols=27 Identities=30% Similarity=0.377 Sum_probs=23.4
Q ss_pred eEEEeecCceeEecCCCcccccccc-cc
Q 002333 842 WTFEQKLGEAVFIPAGCPHQVRNLK-SC 868 (935)
Q Consensus 842 Wtf~Q~lGEAVFIPAGCPHQVRNLk-SC 868 (935)
.++.=+.||.++||+|.+|.+.|.- ++
T Consensus 128 ~~~~l~~GDv~~~P~G~~H~~~N~g~~~ 155 (445)
T 2cav_A 128 DTYKLDQGDAIKIQAGTPFYLINPDNNQ 155 (445)
T ss_dssp EEEEEETTEEEEECTTCCEEEEECCSSC
T ss_pred EEEEecCCCEEEECCCCcEEEEECCCCC
Confidence 4677788999999999999999996 44
No 236
>2d5f_A Glycinin A3B4 subunit; soybean, globulin, 11S,SEED storage protein, plant; 1.90A {Glycine max} PDB: 2d5h_A 1od5_A
Probab=29.00 E-value=14 Score=42.49 Aligned_cols=121 Identities=11% Similarity=0.107 Sum_probs=63.8
Q ss_pred CCCceEEEeecCCChhHHHHHHHHHHHhhccccCCCCCcccCCcccCccccCHHHHH-HHHHHhCccceEEEeecCceeE
Q 002333 775 ESGGALWDIFRRQDVPKLEAYLRKHFKEFRHVYCSPVEQVIHPIHDQCFYLSSEHKK-KLKEEFGVEPWTFEQKLGEAVF 853 (935)
Q Consensus 775 ~~~GAlWDIFRreDvpKLreyL~kh~~Ef~h~~~~pv~~v~dPIHDQ~fYLt~ehk~-rLkEEyGVEpWtf~Q~lGEAVF 853 (935)
..+|.+.-+... +.|-|.. |.--...+....+.-.....||=.++.+|+..-.-+ .+-.+.|-+-.+..=..||.++
T Consensus 346 ~~gG~v~~~~~~-~~P~L~~-lgls~a~v~l~pG~~~~pH~Hp~a~Ei~yVl~G~~~v~v~~~~g~~~~~~~l~~GDv~v 423 (493)
T 2d5f_A 346 PKAGRISTLNSL-TLPALRQ-FGLSAQYVVLYRNGIYSPHWNLNANSVIYVTRGKGRVRVVNAQGNAVFDGELRRGQLLV 423 (493)
T ss_dssp TTTEEEEEESTT-TSTTHHH-HTCEEEEEEECTTCEEEEEEESSCCEEEEEEEEEEEEEEECTTSCEEEEEEEETTCEEE
T ss_pred CCCeEEEEeccc-cCccccc-cceEEEEEEccCCceeeeeECCCCCEEEEEEeceEEEEEEcCCCCEEEeEEEcCCCEEE
Confidence 456777777654 6777632 110111121112222345678877787776543211 1111122222233457899999
Q ss_pred ecCCCccccccccccceecccccCccchHHHHHHHHHhhcCCchhc
Q 002333 854 IPAGCPHQVRNLKSCTKVAVDFVSPENVDECLRLTKEFRLLPKNHR 899 (935)
Q Consensus 854 IPAGCPHQVRNLkSCIKVAlDFVSPEnV~eC~rLteEfR~Lp~~H~ 899 (935)
||+|.||...|...-..+..=|.|+..-..- |+.=|+.+|.+-.
T Consensus 424 vP~G~~H~~~n~~e~~~~l~~~ts~~p~~~~--l~s~~~~~p~eVl 467 (493)
T 2d5f_A 424 VPQNFVVAEQGGEQGLEYVVFKTHHNAVSSY--IKDVFRAIPSEVL 467 (493)
T ss_dssp ECTTCEEEEEEEEEEEEEEEEESSTTCCEEE--HHHHHHHSCHHHH
T ss_pred ECCCCeEeeeeCCCCEEEEEEECCCCCccee--HHHHHHhCCHHHH
Confidence 9999999999976444443333332221111 2666777876543
No 237
>1j58_A YVRK protein; cupin, decarboxyklase, oxalate, manganese, formate, metal BI protein; 1.75A {Bacillus subtilis} SCOP: b.82.1.2 PDB: 1l3j_A 1uw8_A 2uyb_A 2uy9_A 2uy8_A 2v09_A 2uya_A 3s0m_A
Probab=28.79 E-value=26 Score=37.92 Aligned_cols=25 Identities=24% Similarity=0.549 Sum_probs=22.2
Q ss_pred EEEeecCceeEecCCCccccccccc
Q 002333 843 TFEQKLGEAVFIPAGCPHQVRNLKS 867 (935)
Q Consensus 843 tf~Q~lGEAVFIPAGCPHQVRNLkS 867 (935)
++.=..||.++||+|.+|.++|...
T Consensus 123 ~~~l~~GD~~~ip~g~~H~~~n~~~ 147 (385)
T 1j58_A 123 IDDVGEGDLWYFPSGLPHSIQALEE 147 (385)
T ss_dssp EEEEETTEEEEECTTCCEEEEEEEE
T ss_pred EEEeCCCCEEEECCCCeEEEEECCC
Confidence 5577899999999999999999865
No 238
>2o1q_A Putative acetyl/propionyl-COA carboxylase, alpha; putative acetylacetone dioxygenase, structural genomics; HET: MSE PG4; 1.50A {Methylibium petroleiphilum} SCOP: b.82.1.21
Probab=28.35 E-value=20 Score=34.13 Aligned_cols=26 Identities=8% Similarity=-0.123 Sum_probs=22.3
Q ss_pred ecCceeEecCCCccc-cccccccceec
Q 002333 847 KLGEAVFIPAGCPHQ-VRNLKSCTKVA 872 (935)
Q Consensus 847 ~lGEAVFIPAGCPHQ-VRNLkSCIKVA 872 (935)
..||.+++|+|.+|+ +.+...|+=+.
T Consensus 89 ~~Gd~~~~p~g~~H~p~~~~e~~~~l~ 115 (145)
T 2o1q_A 89 IAPGYGYESANARHDKTEFPVASEFYM 115 (145)
T ss_dssp ESSEEEEECTTCEESCCEEEEEEEEEE
T ss_pred CCCEEEEECcCCccCCeECCCCeEEEE
Confidence 689999999999999 88888886443
No 239
>2zet_C Melanophilin; complex, GTP-binding protein, GTPase, G-protein, RAB, RAB27B, effector, SLP homology domain, acetylation, lipoprotein, membrane; HET: GTP; 3.00A {Mus musculus}
Probab=28.32 E-value=17 Score=35.94 Aligned_cols=35 Identities=23% Similarity=0.691 Sum_probs=30.0
Q ss_pred CcccccCcccc---ccccccccCcCCcccchhchHHhh
Q 002333 329 ERVYCNHCATS---IIDLHRSCPKCSYELCLTCCKEIC 363 (935)
Q Consensus 329 ERvyCDnCkTS---I~D~HRSC~~CsyDLCL~CC~ELR 363 (935)
..-.|.+|..+ +++--+-|..|.+-+|-.|+..++
T Consensus 67 ~~~~C~~C~~~fg~l~~~g~~C~~C~~~VC~~C~~~~~ 104 (153)
T 2zet_C 67 NETHCARCLQPYRLLLNSRRQCLECSLFVCKSCSHAHP 104 (153)
T ss_dssp GGTBCTTTCCBGGGCSSCCEECTTTCCEECGGGEECCS
T ss_pred CCccchhhcCccccccCCCCcCCCCCchhhcccccccC
Confidence 35689999998 788899999999999999995554
No 240
>2vrw_B P95VAV, VAV1, proto-oncogene VAV; lipoprotein, GTP-binding, metal-binding, phosphoprotein, exchange factor, RAC, GTPase, membrane domain; 1.85A {Mus musculus} PDB: 3bji_A 1f5x_A
Probab=27.77 E-value=32 Score=37.61 Aligned_cols=38 Identities=16% Similarity=0.407 Sum_probs=29.7
Q ss_pred CCCCcccccCccccccccc-c--ccCcCCcccchhchHHhh
Q 002333 326 GNDERVYCNHCATSIIDLH-R--SCPKCSYELCLTCCKEIC 363 (935)
Q Consensus 326 ~~DERvyCDnCkTSI~D~H-R--SC~~CsyDLCL~CC~ELR 363 (935)
......+|++|...+.-+- | .|..|++-+|-.|..-+.
T Consensus 353 ~~~~~t~C~~C~~~~~g~~~qg~~C~~C~~~~h~~C~~~~~ 393 (406)
T 2vrw_B 353 SFEETTSCKACQMLLRGTFYQGYRCYRCRAPAHKECLGRVP 393 (406)
T ss_dssp CCSSCCBCTTTCCBCCSSSSCEEEETTTCCEECGGGGGGSC
T ss_pred cCCCCCCCccccchhceeCCCCCCCCCCcCccchhhhhhCC
Confidence 3455679999999886332 2 599999999999988665
No 241
>1wem_A Death associated transcription factor 1; structural genomics, PHD domain, death inducer- obliterator 1(DIO-1); NMR {Mus musculus} SCOP: g.50.1.2
Probab=25.88 E-value=35 Score=29.20 Aligned_cols=45 Identities=24% Similarity=0.750 Sum_probs=31.7
Q ss_pred CCcccccccCCC-CceEecCcCCCCcccHhHHhhhCCCCChh--------hhhccCCCCCC
Q 002333 201 RIKCHQCMKSER-KYVVPCGKCRTKVYCIQCIKQWYPKMSEL--------DVAEICPFCRR 252 (935)
Q Consensus 201 ~~~CHQCrqk~~-~~~v~C~~C~r~~FC~~CL~~rY~e~~~e--------dv~~~CP~CRg 252 (935)
...| -|++... ..++.|-.|. .-|=..|+. ++.+ ...|.||.|+.
T Consensus 16 ~~~C-~C~~~~~~~~MI~Cd~C~-~WfH~~Cvg-----l~~~~~~~l~~~~~~~~C~~C~~ 69 (76)
T 1wem_A 16 ALYC-ICRQPHNNRFMICCDRCE-EWFHGDCVG-----ISEARGRLLERNGEDYICPNCTI 69 (76)
T ss_dssp CCCS-TTCCCCCSSCEEECSSSC-CEEEHHHHS-----CCHHHHHHHHHHTCCCCCHHHHH
T ss_pred CCEE-ECCCccCCCCEEEeCCCC-CcEeCeEEc-----cchhhhhhccCCCCeEECcCCcC
Confidence 4778 6888775 4789999998 666667764 3332 24699998863
No 242
>1zbd_B Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: g.50.1.1
Probab=25.84 E-value=40 Score=32.53 Aligned_cols=37 Identities=22% Similarity=0.577 Sum_probs=30.2
Q ss_pred CCcccccCccccc-c--ccccccCcCCcccchhchHHhhc
Q 002333 328 DERVYCNHCATSI-I--DLHRSCPKCSYELCLTCCKEICE 364 (935)
Q Consensus 328 DERvyCDnCkTSI-~--D~HRSC~~CsyDLCL~CC~ELR~ 364 (935)
+..-.|.+|..+. | +--+-|..|.+.+|-.|+-....
T Consensus 53 ~~~~~C~~C~~~~g~l~~~g~~C~~C~~~VC~~C~~~~~~ 92 (134)
T 1zbd_B 53 DGVNRCILCGEQLGMLGSASVVCEDCKKNVCTKCGVETSN 92 (134)
T ss_dssp CSSSBCSSSCCBCSTTSCCEEECTTTCCEEETTSEEECCC
T ss_pred CCCccccccCCCcccccCCCCCCCCCCcccccccCCccCC
Confidence 4556899999887 3 56789999999999999887653
No 243
>2yw8_A RUN and FYVE domain-containing protein 1; structure genomics, structural genomics, NPPSFA; 3.00A {Homo sapiens} PDB: 2yqm_A
Probab=24.71 E-value=41 Score=29.46 Aligned_cols=35 Identities=26% Similarity=0.761 Sum_probs=27.8
Q ss_pred CCCCcccccCccccccccc---cccCcCCcccchhchHH
Q 002333 326 GNDERVYCNHCATSIIDLH---RSCPKCSYELCLTCCKE 361 (935)
Q Consensus 326 ~~DERvyCDnCkTSI~D~H---RSC~~CsyDLCL~CC~E 361 (935)
+.++...|..|..+ |.+- -+|..|+.-+|-.|+..
T Consensus 15 ~d~~~~~C~~C~~~-Fs~~~RrHHCR~CG~v~C~~Cs~~ 52 (82)
T 2yw8_A 15 KDDEATHCRQCEKE-FSISRRKHHCRNCGHIFCNTCSSN 52 (82)
T ss_dssp CCCCCCBCTTTCCB-CBTTBCCEECTTTCCEECSGGGCE
T ss_pred cCccCCcccCcCCc-ccCccccccCCCCCCEEChHHhCC
Confidence 45667789999886 4444 58999999999999864
No 244
>3o70_A PHD finger protein 13; PHF13, structural genomics consortium, SGC, structural genom type zinc finger, protein binding, zinc ION binding; 1.85A {Homo sapiens}
Probab=24.63 E-value=18 Score=31.01 Aligned_cols=49 Identities=22% Similarity=0.530 Sum_probs=32.4
Q ss_pred CCCCcccccccCCCC-ceEecCcCCCCcccHhHHhhhCCCCChhhhhccCCCCCC
Q 002333 199 LERIKCHQCMKSERK-YVVPCGKCRTKVYCIQCIKQWYPKMSELDVAEICPFCRR 252 (935)
Q Consensus 199 g~~~~CHQCrqk~~~-~~v~C~~C~r~~FC~~CL~~rY~e~~~edv~~~CP~CRg 252 (935)
.+...| -|++...+ .++.|-.|. .-|=..|+.-.-... .-.|.||.|+.
T Consensus 17 ~~~~~C-iC~~~~~~~~MIqCd~C~-~WfH~~Cvgi~~~~~---~~~~~C~~C~~ 66 (68)
T 3o70_A 17 QGLVTC-FCMKPFAGRPMIECNECH-TWIHLSCAKIRKSNV---PEVFVCQKCRD 66 (68)
T ss_dssp TTCCCS-TTCCCCTTCCEEECTTTC-CEEETTTTTCCTTSC---CSSCCCHHHHT
T ss_pred CCceEe-ECCCcCCCCCEEECCCCC-ccccccccCcCcccC---CCcEECCCCCC
Confidence 456889 89988754 589999998 555555554222111 23699999864
No 245
>2jmo_A Parkin; IBR, E3 ligase, zinc binding domain, RBR; NMR {Homo sapiens}
Probab=24.59 E-value=47 Score=28.95 Aligned_cols=34 Identities=21% Similarity=0.737 Sum_probs=27.5
Q ss_pred CCcccccC--cccccc----ccccccC-----cCCcccchhchHH
Q 002333 328 DERVYCNH--CATSII----DLHRSCP-----KCSYELCLTCCKE 361 (935)
Q Consensus 328 DERvyCDn--CkTSI~----D~HRSC~-----~CsyDLCL~CC~E 361 (935)
+..+||-. |.+.|. +....|+ +|+|.+|..|-.+
T Consensus 23 ~~~~~CP~p~C~~~v~~~~~~~~v~C~~~~~~~C~~~FC~~C~~~ 67 (80)
T 2jmo_A 23 MGGVLCPRPGCGAGLLPEPDQRKVTCEGGNGLGCGFAFCRECKEA 67 (80)
T ss_dssp CSSCCCCSSSCCCCCCCCSCTTSBCTTSSSTTCCSCCEETTTTEE
T ss_pred CCcEECCCCCCCcccEECCCCCcCCCCCCCCCCCCCeeccccCcc
Confidence 34999988 999885 3457898 9999999999643
No 246
>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A*
Probab=24.18 E-value=15 Score=34.00 Aligned_cols=57 Identities=18% Similarity=0.482 Sum_probs=0.0
Q ss_pred cccccccCC--------CCceEecCcCCCCcccHhHHhhhCCCCChh-hhhccCCCCCCcccCccccccC
Q 002333 203 KCHQCMKSE--------RKYVVPCGKCRTKVYCIQCIKQWYPKMSEL-DVAEICPFCRRNCNCSVCLHTS 263 (935)
Q Consensus 203 ~CHQCrqk~--------~~~~v~C~~C~r~~FC~~CL~~rY~e~~~e-dv~~~CP~CRg~CNCs~Clr~~ 263 (935)
.|..|.... .+.++.|..|. ..|=..||.......... ...|.||.|. .|.+|.+..
T Consensus 3 ~C~~C~~~~~~n~k~g~~~~Li~C~~C~-~~~H~~Cl~~~~~~~~~~~~~~W~C~~C~---~C~~C~~~~ 68 (114)
T 2kwj_A 3 YCDFCLGGSNMNKKSGRPEELVSCADCG-RSGHPTCLQFTLNMTEAVKTYKWQCIECK---SCILCGTSE 68 (114)
T ss_dssp CCSSSCCBTTBCTTTCCCCCCEECSSSC-CEECTTTTTCCHHHHHHHHHTTCCCGGGC---CCTTTTCCT
T ss_pred cCccCCCCccccccCCCCCCCeEeCCCC-CccchhhCCChhhhhhccCCCccCccccC---ccCcccccC
No 247
>2o35_A Hypothetical protein DUF1244; helix bundle, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.12A {Sinorhizobium meliloti} SCOP: a.293.1.1
Probab=24.02 E-value=22 Score=33.21 Aligned_cols=13 Identities=31% Similarity=1.255 Sum_probs=11.7
Q ss_pred cccHhHHhhhCCC
Q 002333 225 VYCIQCIKQWYPK 237 (935)
Q Consensus 225 ~FC~~CL~~rY~e 237 (935)
.||..||.+||.+
T Consensus 42 GFCRNCLskWy~~ 54 (105)
T 2o35_A 42 GFCRNCLSNWYRE 54 (105)
T ss_dssp SCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 6999999999964
No 248
>2l43_A N-teminal domain from histone H3.3, linker, PHD1 from bromodomain-containing protein...; PHD finger, histone CODE, transcription; NMR {Homo sapiens}
Probab=23.86 E-value=39 Score=30.21 Aligned_cols=48 Identities=21% Similarity=0.497 Sum_probs=35.5
Q ss_pred CCCcccccccCC---CCceEecCcCCCCcccHhHHhhhCCCCChhhhhccCCCCCC
Q 002333 200 ERIKCHQCMKSE---RKYVVPCGKCRTKVYCIQCIKQWYPKMSELDVAEICPFCRR 252 (935)
Q Consensus 200 ~~~~CHQCrqk~---~~~~v~C~~C~r~~FC~~CL~~rY~e~~~edv~~~CP~CRg 252 (935)
+...|-.|++.+ .+.++.|-.|. ..|=..|+.-. .++ +-.|.||.|..
T Consensus 24 ~~~~C~vC~~~~s~~~~~ll~CD~C~-~~fH~~Cl~p~--~vP--~g~W~C~~C~~ 74 (88)
T 2l43_A 24 EDAVCSICMDGESQNSNVILFCDMCN-LAVHQECYGVP--YIP--EGQWLCRHCLQ 74 (88)
T ss_dssp CCCCCSSCCSSSSCSEEEEEECSSSC-CCCCHHHHTCS--SCC--SSCCCCHHHHH
T ss_pred CCCcCCcCCCCCCCCCCCEEECCCCC-chhhcccCCCC--ccC--CCceECccccC
Confidence 457899999874 35799999999 67888898743 222 34799998853
No 249
>3fyb_A Protein of unknown function (DUF1244); hydrocar degrading, structural genomics, PSI-2; HET: PEG; 1.80A {Alcanivorax borkumensis SK2}
Probab=23.82 E-value=22 Score=33.11 Aligned_cols=13 Identities=23% Similarity=1.035 Sum_probs=11.7
Q ss_pred cccHhHHhhhCCC
Q 002333 225 VYCIQCIKQWYPK 237 (935)
Q Consensus 225 ~FC~~CL~~rY~e 237 (935)
.||..||.+||.+
T Consensus 41 GFCRNCLskWy~~ 53 (104)
T 3fyb_A 41 DFCRNCLAKWLME 53 (104)
T ss_dssp SCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 6999999999963
No 250
>3kgl_A Cruciferin; 11S SEED globulin, rapeseed, SEED storage protein, storage protein, plant protein; 2.98A {Brassica napus}
Probab=23.80 E-value=29 Score=39.89 Aligned_cols=22 Identities=14% Similarity=0.178 Sum_probs=19.3
Q ss_pred ecCceeEecCCCcccccccccc
Q 002333 847 KLGEAVFIPAGCPHQVRNLKSC 868 (935)
Q Consensus 847 ~lGEAVFIPAGCPHQVRNLkSC 868 (935)
+.||+|.||||.||=.-|.-.-
T Consensus 150 ~~GDvi~iPaG~~~~~~N~g~e 171 (466)
T 3kgl_A 150 RTGDTIATHPGVAQWFYNDGNQ 171 (466)
T ss_dssp ETTEEEEECTTCEEEEECCSSS
T ss_pred cCCCEEEECCCCcEEEEeCCCC
Confidence 5699999999999999998644
No 251
>2xb1_A Pygopus homolog 2, B-cell CLL/lymphoma 9-like Pro; fusion protein, signal transduction, transcription, metal BI WNT proteins; 1.90A {Homo sapiens}
Probab=23.64 E-value=20 Score=32.98 Aligned_cols=46 Identities=22% Similarity=0.607 Sum_probs=33.0
Q ss_pred CCcccccccC--CCCceEecC-cCCCCcccHhHHhhhCCCCChh---------hhhccCCCCCC
Q 002333 201 RIKCHQCMKS--ERKYVVPCG-KCRTKVYCIQCIKQWYPKMSEL---------DVAEICPFCRR 252 (935)
Q Consensus 201 ~~~CHQCrqk--~~~~~v~C~-~C~r~~FC~~CL~~rY~e~~~e---------dv~~~CP~CRg 252 (935)
...|..|++. +.+.++.|- .|. .-|=..|+. ++.+ +..|.||.|+.
T Consensus 3 ~~~C~iC~~p~~~~~~mi~Cdd~C~-~WfH~~CVg-----lt~~~~~~i~~~~~~~~~Cp~C~~ 60 (105)
T 2xb1_A 3 VYPCGACRSEVNDDQDAILCEASCQ-KWFHRECTG-----MTESAYGLLTTEASAVWACDLCLK 60 (105)
T ss_dssp CCBCTTTCSBCCTTSCEEECTTTTC-CEEEGGGTT-----CCHHHHHHHHHCTTEEECCHHHHH
T ss_pred cCCCCCCCCccCCCCCEEEecCCcc-cccccccCC-----cCHHHHHhhccCCCCCEECccccC
Confidence 4678999988 556789997 787 656666663 4442 25699999875
No 252
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C
Probab=23.53 E-value=29 Score=35.03 Aligned_cols=43 Identities=12% Similarity=0.146 Sum_probs=32.0
Q ss_pred CcccccccCCCCceEecCcCCCCcccHhHHhhhCCCCChhhhhccCCCCCC
Q 002333 202 IKCHQCMKSERKYVVPCGKCRTKVYCIQCIKQWYPKMSELDVAEICPFCRR 252 (935)
Q Consensus 202 ~~CHQCrqk~~~~~v~C~~C~r~~FC~~CL~~rY~e~~~edv~~~CP~CRg 252 (935)
..|-=|..--...++. .|+ ..||..||..|.... . ..||+|+.
T Consensus 107 f~CPI~~elm~DPV~~--~~G-htfer~~I~~~l~~~---~--~tcP~t~~ 149 (179)
T 2f42_A 107 LCGKISFELMREPCIT--PSG-ITYDRKDIEEHLQRV---G--HFDPVTRS 149 (179)
T ss_dssp GBCTTTCSBCSSEEEC--TTS-CEEEHHHHHHHHHHT---C--SBCTTTCC
T ss_pred hcccCccccCCCCeEC--CCC-CEECHHHHHHHHHhC---C--CCCCCCcC
Confidence 6777777666666655 588 899999999998431 1 26999985
No 253
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=23.35 E-value=23 Score=31.32 Aligned_cols=50 Identities=18% Similarity=0.313 Sum_probs=33.0
Q ss_pred CCcccccccCCCCceEecCcCCCCcccHhHHhhhCCCCChhhhhccCCC--CCC
Q 002333 201 RIKCHQCMKSERKYVVPCGKCRTKVYCIQCIKQWYPKMSELDVAEICPF--CRR 252 (935)
Q Consensus 201 ~~~CHQCrqk~~~~~v~C~~C~r~~FC~~CL~~rY~e~~~edv~~~CP~--CRg 252 (935)
...|--|..--...++. ..|+ ..||..||..|..+.........||+ |+.
T Consensus 7 ~~~CPI~~~~~~dPV~~-~~cG-h~f~r~cI~~~l~~~~~~~~~~~CP~tgc~~ 58 (94)
T 2yu4_A 7 GFTCPITKEEMKKPVKN-KVCG-HTYEEDAIVRMIESRQKRKKKAYCPQIGCSH 58 (94)
T ss_dssp CCBCTTTCSBCSSEEEE-SSSC-CEEEHHHHHHHHHHHHTTTCCBCCCSTTCCC
T ss_pred EeECcCcCchhcCCEEc-CCCC-CeecHHHHHHHHHHccCcCCCCCCCcCcCcc
Confidence 36788888665554542 2489 89999999999852100012468998 764
No 254
>1z2q_A LM5-1; membrane protein, FYVE domain, zinc-finger; NMR {Leishmania major}
Probab=23.09 E-value=59 Score=28.53 Aligned_cols=36 Identities=25% Similarity=0.732 Sum_probs=28.5
Q ss_pred cCCCCcccccCccccccccc---cccCcCCcccchhchHH
Q 002333 325 CGNDERVYCNHCATSIIDLH---RSCPKCSYELCLTCCKE 361 (935)
Q Consensus 325 ~~~DERvyCDnCkTSI~D~H---RSC~~CsyDLCL~CC~E 361 (935)
...++...|..|.++ |.+- -+|..|+.-+|-.|+..
T Consensus 16 ~pd~~~~~C~~C~~~-Fs~~~RrHHCR~CG~v~C~~Cs~~ 54 (84)
T 1z2q_A 16 QEDEDAPACNGCGCV-FTTTVRRHHCRNCGYVLCGDCSRH 54 (84)
T ss_dssp CCTTTCCBCTTTCCB-CCTTSCCEECTTTCCEECTGGGCC
T ss_pred ccCCCCCCCcCcCCc-cccchhcccccCCCcEEChHHhCC
Confidence 345667789999988 4444 58999999999999864
No 255
>3qac_A 11S globulin SEED storage protein; 11S SEED storage protein (globulins) family, SEED storage PR plant protein; 2.27A {Amaranthus hypochondriacus}
Probab=22.73 E-value=35 Score=39.12 Aligned_cols=34 Identities=29% Similarity=0.374 Sum_probs=25.4
Q ss_pred ecCceeEecCCCccccccccccceecccccCccc
Q 002333 847 KLGEAVFIPAGCPHQVRNLKSCTKVAVDFVSPEN 880 (935)
Q Consensus 847 ~lGEAVFIPAGCPHQVRNLkSCIKVAlDFVSPEn 880 (935)
+.||+|+||||.+|=.-|--+-==|++-++.|-|
T Consensus 135 ~~GDvi~iPaG~~hw~~N~G~~~lv~v~~~d~~n 168 (465)
T 3qac_A 135 REGDIFAMPAGVSHWAYNNGDQPLVAVILIDTAN 168 (465)
T ss_dssp ETTEEEEECTTCEEEEECCSSSCEEEEEEECTTS
T ss_pred cCCCEEEECCCCeEEEEcCCCCCEEEEEEEcCCC
Confidence 6799999999999999998654445554444443
No 256
>3nw4_A Gentisate 1,2-dioxygenase; beta-barrel, oxidoreductase; HET: GTQ; 2.00A {Pseudaminobacter salicylatoxidans} PDB: 3nvc_A* 3nst_A* 3njz_A* 2phd_A* 3nkt_A* 3nl1_A* 4fag_A* 4fbf_A 4fah_A
Probab=22.54 E-value=42 Score=37.39 Aligned_cols=31 Identities=13% Similarity=0.205 Sum_probs=25.7
Q ss_pred ccceEEEeecCceeEecCCCccccccccccc
Q 002333 839 VEPWTFEQKLGEAVFIPAGCPHQVRNLKSCT 869 (935)
Q Consensus 839 VEpWtf~Q~lGEAVFIPAGCPHQVRNLkSCI 869 (935)
|.+=+|.=..||++.||+|++||..|...|+
T Consensus 314 I~~~~~~w~~gD~fvvP~w~~h~~~n~~~a~ 344 (368)
T 3nw4_A 314 MNGETTKLEKGDMFVVPSWVPWSLQAETQFD 344 (368)
T ss_dssp ETTEEEEECTTCEEEECTTCCEEEEESSSEE
T ss_pred ECCEEEEecCCCEEEECCCCcEEEEeCCCEE
Confidence 3455688889999999999999999976654
No 257
>1wep_A PHF8; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Mus musculus} SCOP: g.50.1.2
Probab=21.83 E-value=1.7e+02 Score=25.18 Aligned_cols=47 Identities=21% Similarity=0.624 Sum_probs=33.4
Q ss_pred CCCcccccccCC--CCceEecCcCCCCcccHhHHhhhCCCCChhh----hhccCCCCCCc
Q 002333 200 ERIKCHQCMKSE--RKYVVPCGKCRTKVYCIQCIKQWYPKMSELD----VAEICPFCRRN 253 (935)
Q Consensus 200 ~~~~CHQCrqk~--~~~~v~C~~C~r~~FC~~CL~~rY~e~~~ed----v~~~CP~CRg~ 253 (935)
....| -|++.. ...++.|-.|. .-|=..|+. ++.++ ..|.||.|+..
T Consensus 11 ~~~~C-~C~~~~d~~~~MIqCd~C~-~WfH~~Cvg-----l~~~~~~~~~~~~C~~C~~~ 63 (79)
T 1wep_A 11 VPVYC-LCRQPYNVNHFMIECGLCQ-DWFHGSCVG-----IEEENAVDIDIYHCPDCEAV 63 (79)
T ss_dssp CCCCS-TTSCSCCSSSCEEEBTTTC-CEEEHHHHT-----CCHHHHTTCSBBCCTTTTTT
T ss_pred CccEE-EcCCccCCCCceEEcCCCC-CcEEeeecC-----cccccccCCCeEECCCcccc
Confidence 44777 788865 57789999998 666667764 33332 46999999863
No 258
>3lqh_A Histone-lysine N-methyltransferase MLL; PHD finger, bromodomain, leukemia, apoptosis, chromati regulator, DNA-binding, isopeptide bond; 1.72A {Homo sapiens} PDB: 3lqi_A* 3lqj_A* 2kyu_A
Probab=21.56 E-value=64 Score=32.61 Aligned_cols=46 Identities=28% Similarity=0.569 Sum_probs=31.2
Q ss_pred CcccccccCCC-----CceEecCcCCCCcccHhHHhhhCCCCChh----------hhhccCCCCCCc
Q 002333 202 IKCHQCMKSER-----KYVVPCGKCRTKVYCIQCIKQWYPKMSEL----------DVAEICPFCRRN 253 (935)
Q Consensus 202 ~~CHQCrqk~~-----~~~v~C~~C~r~~FC~~CL~~rY~e~~~e----------dv~~~CP~CRg~ 253 (935)
..|--|++.-. ..++.|-.|. .-|=+.|.. ++.+ +..|.||.|+..
T Consensus 3 ~~CpiC~k~Y~~~~~~~~MIqCd~C~-~W~H~~Cvg-----i~~~~~e~~~~~pe~~~y~Cp~C~~~ 63 (183)
T 3lqh_A 3 NFCPLCDKCYDDDDYESKMMQCGKCD-RWVHSKCEN-----LSDEMYEILSNLPESVAYTCVNCTER 63 (183)
T ss_dssp CBCTTTCCBCTTCCTTCCEEECTTTC-CEEEGGGSS-----CCHHHHHHHHHSHHHHCCCCTTTCCS
T ss_pred CcCCCCcCccCCcccCCCeEECCCCC-cccchhccc-----cCHHHHHHhhcCCCCCeeECcCCCCC
Confidence 67888877642 2389999999 555556653 3332 247999999874
No 259
>3c6w_A P28ING5, inhibitor of growth protein 5; chromatin, PHD, ING, epigenetics, alternative splicing, metal-binding, phosphoprotein, zinc; HET: M3L; 1.75A {Homo sapiens} PDB: 2pnx_A*
Probab=20.66 E-value=19 Score=30.00 Aligned_cols=48 Identities=19% Similarity=0.547 Sum_probs=33.3
Q ss_pred CCCcccccccCCCCceEecCc--CCCCcccHhHHhhhCCCCChhhhhccCCCCCC
Q 002333 200 ERIKCHQCMKSERKYVVPCGK--CRTKVYCIQCIKQWYPKMSELDVAEICPFCRR 252 (935)
Q Consensus 200 ~~~~CHQCrqk~~~~~v~C~~--C~r~~FC~~CL~~rY~e~~~edv~~~CP~CRg 252 (935)
+...| -|++...+.++.|-+ |.+.-|=..|+. ..... .-.|.||.|+.
T Consensus 8 e~~yC-~C~~~~~g~mi~CD~~~C~~~wfH~~Cvg--l~~~p--~~~w~Cp~C~~ 57 (59)
T 3c6w_A 8 EPTYC-LCHQVSYGEMIGCDNPDCPIEWFHFACVD--LTTKP--KGKWFCPRCVQ 57 (59)
T ss_dssp CCEET-TTTEECCSEEEECSCTTCSSCEEETGGGT--CSSCC--SSCCCCHHHHC
T ss_pred CCcEE-ECCCCCCCCeeEeeCCCCCCCCEecccCC--cccCC--CCCEECcCccC
Confidence 45778 799977788999999 775556667766 12111 24799998854
No 260
>1x4u_A Zinc finger, FYVE domain containing 27 isoform B; phosphoinositide binding, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=20.56 E-value=49 Score=29.00 Aligned_cols=35 Identities=26% Similarity=0.776 Sum_probs=27.3
Q ss_pred CCCCcccccCccccccccc---cccCcCCcccchhchHH
Q 002333 326 GNDERVYCNHCATSIIDLH---RSCPKCSYELCLTCCKE 361 (935)
Q Consensus 326 ~~DERvyCDnCkTSI~D~H---RSC~~CsyDLCL~CC~E 361 (935)
+.++...|..|..+ |.+. -+|..|+.-+|-.|+..
T Consensus 10 pd~~~~~C~~C~~~-F~~~~RrHHCR~CG~vfC~~Cs~~ 47 (84)
T 1x4u_A 10 PTNNFGNCTGCSAT-FSVLKKRRSCSNCGNSFCSRCCSF 47 (84)
T ss_dssp SCCCCSSCSSSCCC-CCSSSCCEECSSSCCEECTTTSCE
T ss_pred cCCCCCcCcCcCCc-cccchhhhhhcCCCcEEChhhcCC
Confidence 45566789999987 3443 58999999999999753
No 261
>3avr_A Lysine-specific demethylase 6A; cupin superfamily, TRI/dimethyllysine demethylase, oxidoredu structural protein complex; HET: M3L OGA EDO; 1.80A {Homo sapiens} PDB: 3avs_A*
Probab=20.26 E-value=66 Score=37.58 Aligned_cols=37 Identities=19% Similarity=0.514 Sum_probs=29.6
Q ss_pred CCCcccccCccccccccccccC--cCC---cccchhchHHhh
Q 002333 327 NDERVYCNHCATSIIDLHRSCP--KCS---YELCLTCCKEIC 363 (935)
Q Consensus 327 ~DERvyCDnCkTSI~D~HRSC~--~Cs---yDLCL~CC~ELR 363 (935)
.+...+|..|++-+|++...|+ +|. .++|+.|...-+
T Consensus 455 ~~~~~~C~~C~~~lFn~~~v~~~~~~~~~~~v~C~~Ca~~~~ 496 (531)
T 3avr_A 455 EEPAHYCSICEVEVFDLLFVTNESNSRKTYIVHCQDCARKTS 496 (531)
T ss_dssp TCCCEECTTTCCEECSEEEEEECTTCSSEEEEECHHHHHHHC
T ss_pred CCCCeeccccchhheeeEEEEecCCCCCCCCcCChhhhhhcC
Confidence 4567899999999999998885 242 479999999743
No 262
>1zbd_B Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: g.50.1.1
Probab=20.20 E-value=15 Score=35.37 Aligned_cols=50 Identities=20% Similarity=0.435 Sum_probs=35.6
Q ss_pred CCCcccccccCCC---CceEecCcCCCCcccHhHHhhhCCCCChhhhhccCCCCCC
Q 002333 200 ERIKCHQCMKSER---KYVVPCGKCRTKVYCIQCIKQWYPKMSELDVAEICPFCRR 252 (935)
Q Consensus 200 ~~~~CHQCrqk~~---~~~v~C~~C~r~~FC~~CL~~rY~e~~~edv~~~CP~CRg 252 (935)
+...|.-|.+.-. .....|..|. ..+|..|-..-.. ...+..|.|-+|+.
T Consensus 54 ~~~~C~~C~~~~g~l~~~g~~C~~C~-~~VC~~C~~~~~~--~~~~~~W~C~vC~k 106 (134)
T 1zbd_B 54 GVNRCILCGEQLGMLGSASVVCEDCK-KNVCTKCGVETSN--NRPHPVWLCKICLE 106 (134)
T ss_dssp SSSBCSSSCCBCSTTSCCEEECTTTC-CEEETTSEEECCC--SSSSCCEEEHHHHH
T ss_pred CCccccccCCCcccccCCCCCCCCCC-cccccccCCccCC--CCCccceechhhHH
Confidence 3478999997762 4578999999 9999999775421 23467788766653
No 263
>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}
Probab=20.20 E-value=56 Score=28.74 Aligned_cols=33 Identities=27% Similarity=0.720 Sum_probs=27.5
Q ss_pred CcccccccC-CCCceEecCcCCCCcccHhHHhh-hC
Q 002333 202 IKCHQCMKS-ERKYVVPCGKCRTKVYCIQCIKQ-WY 235 (935)
Q Consensus 202 ~~CHQCrqk-~~~~~v~C~~C~r~~FC~~CL~~-rY 235 (935)
..|--|... ....++.|..|+ ..||..|+.. +.
T Consensus 4 ~~C~~C~~~~~~~av~~C~~C~-~~~C~~Cl~~~h~ 38 (101)
T 2jun_A 4 VLCQFCDQDPAQDAVKTCVTCE-VSYCDECLKATHP 38 (101)
T ss_dssp CBCTTCCSSSCCBCCEEETTTT-EEECHHHHHHHSC
T ss_pred CCCcCCCCCCCCCceEECCcCC-hHHhHHHCHHHhc
Confidence 679999854 456689999999 9999999998 44
Done!