Query 002334
Match_columns 935
No_of_seqs 464 out of 1919
Neff 4.9
Searched_HMMs 46136
Date Thu Mar 28 21:42:35 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002334.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/002334hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG1246 ArgA N-acetylglutamate 99.1 5.3E-11 1.2E-15 118.7 6.7 91 799-893 38-129 (153)
2 KOG1244 Predicted transcriptio 99.1 1E-11 2.2E-16 131.7 0.6 104 540-703 220-329 (336)
3 PRK10314 putative acyltransfer 99.0 7.5E-10 1.6E-14 110.2 10.1 115 761-888 16-135 (153)
4 PF13508 Acetyltransf_7: Acety 99.0 2E-09 4.4E-14 94.4 11.1 77 803-884 3-79 (79)
5 KOG4323 Polycomb-like PHD Zn-f 99.0 3.4E-10 7.4E-15 129.2 5.2 211 542-774 81-301 (464)
6 PF00583 Acetyltransf_1: Acety 99.0 3.3E-09 7.2E-14 92.2 9.8 74 809-883 2-83 (83)
7 KOG0956 PHD finger protein AF1 99.0 3.2E-10 6.9E-15 131.7 4.1 143 565-713 19-188 (900)
8 PF13673 Acetyltransf_10: Acet 98.9 9.6E-09 2.1E-13 94.7 10.7 74 803-882 44-117 (117)
9 KOG1512 PHD Zn-finger protein 98.8 7.4E-10 1.6E-14 118.3 1.2 81 564-702 275-360 (381)
10 PTZ00330 acetyltransferase; Pr 98.8 4.5E-08 9.7E-13 94.0 10.8 83 804-887 53-141 (147)
11 PRK10146 aminoalkylphosphonic 98.7 3.6E-08 7.7E-13 94.4 9.1 79 806-885 50-136 (144)
12 PLN02706 glucosamine 6-phospha 98.7 7.2E-08 1.6E-12 93.6 10.6 82 804-886 54-143 (150)
13 PLN02825 amino-acid N-acetyltr 98.7 6.6E-08 1.4E-12 113.5 11.6 104 806-913 410-514 (515)
14 PF15446 zf-PHD-like: PHD/FYVE 98.7 1.5E-08 3.3E-13 102.0 5.2 133 546-684 1-143 (175)
15 cd02169 Citrate_lyase_ligase C 98.7 5.1E-08 1.1E-12 107.5 9.6 74 807-886 10-83 (297)
16 PRK07757 acetyltransferase; Pr 98.7 8.7E-08 1.9E-12 93.2 9.7 81 807-890 45-125 (152)
17 PRK07922 N-acetylglutamate syn 98.7 9.1E-08 2E-12 96.7 10.0 79 806-887 48-127 (169)
18 PF13527 Acetyltransf_9: Acety 98.7 1.7E-07 3.8E-12 88.1 11.0 111 762-885 10-127 (127)
19 KOG0825 PHD Zn-finger protein 98.6 8.1E-09 1.8E-13 121.4 1.7 55 641-706 212-267 (1134)
20 PRK03624 putative acetyltransf 98.6 1.1E-07 2.4E-12 89.2 8.8 83 804-888 46-131 (140)
21 TIGR01890 N-Ac-Glu-synth amino 98.6 2.3E-07 5.1E-12 106.8 11.3 86 807-894 326-412 (429)
22 TIGR01575 rimI ribosomal-prote 98.5 4.8E-07 1E-11 84.1 10.0 80 806-887 34-116 (131)
23 TIGR00124 cit_ly_ligase [citra 98.5 2.9E-07 6.3E-12 103.1 9.9 80 803-888 31-110 (332)
24 PRK10975 TDP-fucosamine acetyl 98.5 4.3E-07 9.4E-12 92.9 10.2 84 803-887 102-188 (194)
25 TIGR02382 wecD_rffC TDP-D-fuco 98.5 4.6E-07 9.9E-12 92.7 10.2 80 807-887 103-185 (191)
26 COG2153 ElaA Predicted acyltra 98.5 4.1E-07 8.8E-12 90.2 8.5 87 803-890 50-139 (155)
27 PRK05279 N-acetylglutamate syn 98.5 4.8E-07 1E-11 104.4 10.6 86 806-893 337-423 (441)
28 TIGR03827 GNAT_ablB putative b 98.5 5.6E-07 1.2E-11 97.2 10.3 85 802-887 157-245 (266)
29 COG5141 PHD zinc finger-contai 98.5 4.4E-08 9.5E-13 111.0 1.5 125 543-688 192-341 (669)
30 PRK09491 rimI ribosomal-protei 98.5 1.2E-06 2.5E-11 85.0 11.0 85 801-887 38-125 (146)
31 KOG4299 PHD Zn-finger protein 98.5 6.9E-08 1.5E-12 112.9 2.8 59 534-601 241-305 (613)
32 KOG0954 PHD finger protein [Ge 98.5 9.4E-08 2E-12 112.6 3.9 154 538-707 265-441 (893)
33 PRK12308 bifunctional arginino 98.5 5.2E-07 1.1E-11 108.5 10.1 82 806-890 506-587 (614)
34 KOG0955 PHD finger protein BR1 98.4 2.1E-07 4.5E-12 115.5 4.4 127 542-685 217-365 (1051)
35 KOG4299 PHD Zn-finger protein 98.4 2.1E-07 4.6E-12 108.9 4.1 51 646-705 255-305 (613)
36 KOG0383 Predicted helicase [Ge 98.4 1.5E-07 3.4E-12 112.8 2.6 156 573-770 1-163 (696)
37 PRK13688 hypothetical protein; 98.4 1.5E-06 3.3E-11 87.6 9.3 76 807-888 49-134 (156)
38 PRK10140 putative acetyltransf 98.3 2.7E-06 5.8E-11 82.7 10.2 85 803-889 51-143 (162)
39 PRK09831 putative acyltransfer 98.3 1.6E-06 3.6E-11 84.6 8.3 73 806-889 56-128 (147)
40 PHA00673 acetyltransferase dom 98.3 5.1E-06 1.1E-10 83.9 10.7 83 803-886 55-145 (154)
41 KOG4443 Putative transcription 98.3 3.7E-07 8.1E-12 107.1 2.4 79 564-698 31-112 (694)
42 TIGR03448 mycothiol_MshD mycot 98.2 9.7E-06 2.1E-10 87.5 11.3 81 804-887 47-128 (292)
43 TIGR03448 mycothiol_MshD mycot 98.2 7.3E-06 1.6E-10 88.4 9.9 86 801-887 198-288 (292)
44 KOG3139 N-acetyltransferase [G 98.1 1.2E-05 2.6E-10 81.2 10.2 73 814-887 68-146 (165)
45 KOG3396 Glucosamine-phosphate 98.1 7.5E-06 1.6E-10 80.6 8.5 83 803-886 53-143 (150)
46 TIGR02406 ectoine_EctA L-2,4-d 98.1 1.2E-05 2.6E-10 80.2 9.3 83 804-887 40-128 (157)
47 COG0456 RimI Acetyltransferase 98.1 1.6E-05 3.4E-10 78.6 9.4 76 813-889 72-156 (177)
48 TIGR03103 trio_acet_GNAT GNAT- 98.1 1.5E-05 3.3E-10 94.8 10.5 85 802-887 122-217 (547)
49 PF13420 Acetyltransf_4: Acety 98.0 3E-05 6.6E-10 75.3 10.6 76 810-887 58-139 (155)
50 cd04301 NAT_SF N-Acyltransfera 98.0 2.3E-05 4.9E-10 62.2 7.9 61 806-866 2-64 (65)
51 PHA01807 hypothetical protein 98.0 1.6E-05 3.5E-10 80.1 8.1 81 804-887 54-141 (153)
52 PF08445 FR47: FR47-like prote 98.0 2.8E-05 6E-10 70.9 8.7 75 811-887 6-82 (86)
53 PRK01346 hypothetical protein; 98.0 2.5E-05 5.5E-10 88.9 10.1 80 805-887 49-136 (411)
54 PRK10562 putative acetyltransf 97.9 4E-05 8.6E-10 74.5 8.9 76 806-888 51-126 (145)
55 TIGR01686 FkbH FkbH-like domai 97.9 4.4E-05 9.5E-10 84.9 10.1 82 802-885 230-319 (320)
56 PRK15130 spermidine N1-acetylt 97.9 6E-05 1.3E-09 76.1 10.2 82 804-887 58-145 (186)
57 PRK10514 putative acetyltransf 97.9 4.9E-05 1.1E-09 73.1 9.1 73 809-889 56-128 (145)
58 PF00628 PHD: PHD-finger; Int 97.9 2.1E-06 4.5E-11 70.4 -0.7 48 647-703 2-49 (51)
59 PF13523 Acetyltransf_8: Acety 97.9 8.8E-05 1.9E-09 72.4 10.4 86 801-887 46-141 (152)
60 smart00249 PHD PHD zinc finger 97.8 1.6E-05 3.4E-10 62.5 3.5 46 647-702 2-47 (47)
61 TIGR01211 ELP3 histone acetylt 97.8 6.2E-05 1.4E-09 89.2 9.7 77 810-887 421-516 (522)
62 COG3393 Predicted acetyltransf 97.8 6.4E-05 1.4E-09 81.4 8.6 84 803-887 177-262 (268)
63 PF13718 GNAT_acetyltr_2: GNAT 97.8 0.00015 3.2E-09 76.1 10.9 87 800-887 24-176 (196)
64 TIGR03585 PseH pseudaminic aci 97.8 0.00016 3.6E-09 70.1 10.5 81 806-889 54-140 (156)
65 KOG0383 Predicted helicase [Ge 97.8 1.4E-05 3.1E-10 96.4 3.5 49 541-601 44-94 (696)
66 KOG1512 PHD Zn-finger protein 97.8 1E-05 2.3E-10 87.2 1.9 53 539-600 309-362 (381)
67 PF00628 PHD: PHD-finger; Int 97.7 1.3E-05 2.7E-10 65.7 1.8 46 546-600 1-50 (51)
68 KOG1244 Predicted transcriptio 97.7 1.2E-05 2.6E-10 86.4 1.5 51 543-602 280-332 (336)
69 PRK10809 ribosomal-protein-S5- 97.6 0.00029 6.3E-09 71.7 9.6 83 803-887 77-166 (194)
70 smart00249 PHD PHD zinc finger 97.6 6.3E-05 1.4E-09 59.0 3.2 44 546-598 1-47 (47)
71 PF13302 Acetyltransf_3: Acety 97.5 0.00068 1.5E-08 64.3 10.6 80 802-883 55-142 (142)
72 COG3153 Predicted acetyltransf 97.5 0.00033 7.1E-09 72.1 8.5 138 758-915 10-152 (171)
73 PRK10151 ribosomal-protein-L7/ 97.5 0.00069 1.5E-08 68.0 10.5 80 807-888 71-156 (179)
74 KOG3397 Acetyltransferases [Ge 97.5 0.00018 3.9E-09 73.6 6.1 77 811-889 65-143 (225)
75 KOG1973 Chromatin remodeling p 97.4 7.6E-05 1.6E-09 81.9 2.3 49 542-601 217-268 (274)
76 COG5034 TNG2 Chromatin remodel 97.3 0.00011 2.3E-09 78.8 2.4 49 541-600 218-269 (271)
77 COG5034 TNG2 Chromatin remodel 97.3 9.6E-05 2.1E-09 79.2 2.0 49 641-704 218-269 (271)
78 KOG1473 Nucleosome remodeling 97.3 4.5E-05 9.8E-10 93.9 -0.6 129 542-709 342-483 (1414)
79 KOG1973 Chromatin remodeling p 97.3 8.4E-05 1.8E-09 81.5 1.3 36 662-704 229-267 (274)
80 COG1247 Sortase and related ac 97.3 0.0015 3.2E-08 67.3 10.2 115 795-915 44-166 (169)
81 KOG4443 Putative transcription 97.2 0.00013 2.7E-09 86.5 1.8 140 535-703 59-200 (694)
82 KOG0957 PHD finger protein [Ge 97.1 0.00021 4.6E-09 82.1 1.7 128 546-685 121-277 (707)
83 KOG0825 PHD Zn-finger protein 97.1 0.00019 4.2E-09 85.8 1.4 47 544-599 215-264 (1134)
84 KOG0957 PHD finger protein [Ge 96.8 0.00048 1E-08 79.3 1.7 58 645-713 545-608 (707)
85 KOG3216 Diamine acetyltransfer 96.7 0.018 4E-07 58.3 11.8 124 756-887 14-146 (163)
86 PF13831 PHD_2: PHD-finger; PD 96.6 0.00051 1.1E-08 53.5 -0.3 34 566-599 2-36 (36)
87 PF12746 GNAT_acetyltran: GNAT 96.5 0.014 3E-07 64.2 10.5 77 809-887 171-247 (265)
88 PF08444 Gly_acyl_tr_C: Aralky 96.5 0.0051 1.1E-07 57.2 5.5 75 807-886 3-79 (89)
89 cd04718 BAH_plant_2 BAH, or Br 96.4 0.0015 3.2E-08 65.7 2.0 27 674-705 1-27 (148)
90 PF12568 DUF3749: Acetyltransf 96.3 0.027 6E-07 55.6 10.0 81 802-887 39-125 (128)
91 KOG0955 PHD finger protein BR1 96.3 0.0025 5.5E-08 80.3 3.5 57 642-709 217-273 (1051)
92 KOG4144 Arylalkylamine N-acety 96.2 0.0038 8.2E-08 63.2 3.4 61 826-887 100-161 (190)
93 COG3053 CitC Citrate lyase syn 96.2 0.018 3.9E-07 63.6 8.7 79 803-887 37-115 (352)
94 PF14542 Acetyltransf_CG: GCN5 96.2 0.024 5.2E-07 51.1 8.1 58 807-865 3-60 (78)
95 COG0454 WecD Histone acetyltra 96.2 0.0066 1.4E-07 50.9 4.3 44 833-882 87-130 (156)
96 COG1444 Predicted P-loop ATPas 96.1 0.0075 1.6E-07 74.1 5.9 58 828-887 532-591 (758)
97 cd04718 BAH_plant_2 BAH, or Br 96.1 0.003 6.5E-08 63.6 1.9 25 577-601 1-27 (148)
98 COG1670 RimL Acetyltransferase 95.9 0.048 1E-06 53.4 9.8 87 801-889 64-160 (187)
99 KOG0956 PHD finger protein AF1 95.8 0.0041 8.8E-08 74.2 2.0 51 643-704 4-56 (900)
100 COG2388 Predicted acetyltransf 95.8 0.022 4.7E-07 54.1 6.3 62 801-864 15-76 (99)
101 KOG1245 Chromatin remodeling c 95.7 0.0024 5.2E-08 83.1 -0.3 60 642-712 1106-1165(1404)
102 KOG2488 Acetyltransferase (GNA 95.6 0.041 8.9E-07 57.6 7.8 84 803-887 93-182 (202)
103 KOG1245 Chromatin remodeling c 94.8 0.0072 1.6E-07 78.9 -0.5 51 542-601 1106-1158(1404)
104 KOG3138 Predicted N-acetyltran 94.5 0.043 9.3E-07 57.5 4.5 62 827-889 89-154 (187)
105 KOG0954 PHD finger protein [Ge 94.5 0.016 3.5E-07 69.9 1.5 52 643-705 270-321 (893)
106 COG4552 Eis Predicted acetyltr 94.4 0.057 1.2E-06 61.2 5.5 84 797-887 35-127 (389)
107 PF13480 Acetyltransf_6: Acety 94.2 0.34 7.4E-06 45.8 9.6 66 803-869 71-136 (142)
108 KOG4323 Polycomb-like PHD Zn-f 94.0 0.027 5.8E-07 65.8 1.9 49 546-601 170-224 (464)
109 COG5141 PHD zinc finger-contai 93.6 0.027 5.8E-07 65.4 1.0 47 645-702 194-240 (669)
110 TIGR03694 exosort_acyl putativ 93.3 0.45 9.8E-06 51.6 9.7 124 759-887 16-200 (241)
111 KOG3234 Acetyltransferase, (GN 92.9 0.13 2.9E-06 52.5 4.6 58 827-885 69-129 (173)
112 PF06852 DUF1248: Protein of u 92.3 0.75 1.6E-05 48.2 9.4 83 803-887 47-137 (181)
113 KOG3235 Subunit of the major N 92.3 0.38 8.2E-06 49.4 6.9 81 807-887 45-135 (193)
114 COG1243 ELP3 Histone acetyltra 92.3 0.11 2.4E-06 60.7 3.5 51 836-887 459-509 (515)
115 smart00258 SAND SAND domain. 92.0 0.14 2.9E-06 46.3 3.0 50 258-309 19-69 (73)
116 PF13831 PHD_2: PHD-finger; PD 91.1 0.024 5.2E-07 44.3 -2.3 33 663-702 2-35 (36)
117 PF01342 SAND: SAND domain; I 90.7 0.1 2.2E-06 47.9 0.9 54 254-309 19-78 (82)
118 PF00765 Autoind_synth: Autoin 89.1 2.2 4.8E-05 44.6 9.4 82 801-884 44-152 (182)
119 PF12861 zf-Apc11: Anaphase-pr 88.5 0.22 4.7E-06 46.2 1.3 59 543-602 20-81 (85)
120 PRK13834 putative autoinducer 88.5 2.8 6E-05 44.7 9.8 118 760-884 16-162 (207)
121 PF12678 zf-rbx1: RING-H2 zinc 88.4 0.12 2.5E-06 46.2 -0.5 54 544-599 19-73 (73)
122 COG3981 Predicted acetyltransf 87.6 1 2.2E-05 46.8 5.6 67 803-871 70-141 (174)
123 cd04264 DUF619-NAGS DUF619 dom 85.9 1.7 3.7E-05 41.4 5.8 48 809-856 14-63 (99)
124 PF13639 zf-RING_2: Ring finge 84.9 0.084 1.8E-06 42.1 -3.0 44 545-599 1-44 (44)
125 PF07897 DUF1675: Protein of u 83.3 1.7 3.7E-05 48.6 5.1 66 226-295 209-283 (284)
126 PF07227 DUF1423: Protein of u 80.7 1.8 3.8E-05 50.8 4.3 35 647-684 131-165 (446)
127 PF02474 NodA: Nodulation prot 79.8 2.8 6.2E-05 43.7 5.0 51 827-878 85-135 (196)
128 PF14446 Prok-RING_1: Prokaryo 79.2 1.2 2.6E-05 38.1 1.8 34 543-584 4-37 (54)
129 TIGR03019 pepcterm_femAB FemAB 78.6 5.9 0.00013 44.4 7.5 81 805-886 197-280 (330)
130 cd04265 DUF619-NAGS-U DUF619 d 76.8 5.1 0.00011 38.2 5.4 48 809-856 15-63 (99)
131 PF11793 FANCL_C: FANCL C-term 76.2 1.8 3.8E-05 38.6 2.0 52 545-602 3-65 (70)
132 KOG4628 Predicted E3 ubiquitin 71.7 2.9 6.3E-05 47.9 2.9 46 545-602 230-277 (348)
133 KOG1473 Nucleosome remodeling 71.7 2.1 4.5E-05 54.8 1.8 45 645-703 345-389 (1414)
134 KOG2535 RNA polymerase II elon 70.1 6.1 0.00013 45.2 4.8 66 818-887 480-547 (554)
135 PF01233 NMT: Myristoyl-CoA:pr 66.4 47 0.001 34.6 9.8 111 742-863 22-146 (162)
136 KOG4135 Predicted phosphogluco 64.1 15 0.00032 37.8 5.7 58 827-885 107-168 (185)
137 PF15446 zf-PHD-like: PHD/FYVE 61.7 4.4 9.5E-05 42.1 1.6 35 647-684 2-36 (175)
138 PF14446 Prok-RING_1: Prokaryo 60.5 5.7 0.00012 34.1 1.8 35 645-684 6-40 (54)
139 PF01853 MOZ_SAS: MOZ/SAS fami 60.2 36 0.00079 36.2 8.0 84 760-860 26-113 (188)
140 KOG2752 Uncharacterized conser 59.9 8.5 0.00018 43.5 3.5 103 564-683 64-167 (345)
141 COG3818 Predicted acetyltransf 59.5 28 0.0006 35.3 6.6 59 833-891 90-152 (167)
142 PF13832 zf-HC5HC2H_2: PHD-zin 58.6 4.5 9.7E-05 38.3 1.0 32 645-684 56-89 (110)
143 PRK00756 acyltransferase NodA; 58.4 16 0.00035 38.2 4.9 39 827-866 85-123 (196)
144 COG5628 Predicted acetyltransf 57.3 32 0.0007 34.4 6.5 74 805-883 39-119 (143)
145 PF13771 zf-HC5HC2H: PHD-like 56.5 3.6 7.9E-05 37.4 -0.0 32 645-684 37-70 (90)
146 PHA02929 N1R/p28-like protein; 56.2 4.5 9.9E-05 44.2 0.7 54 543-602 173-226 (238)
147 PLN03238 probable histone acet 55.2 25 0.00053 39.7 6.0 83 761-860 102-188 (290)
148 PF04377 ATE_C: Arginine-tRNA- 53.9 54 0.0012 32.8 7.7 62 803-865 39-100 (128)
149 PTZ00064 histone acetyltransfe 53.5 16 0.00035 43.8 4.5 83 760-859 330-416 (552)
150 PF13880 Acetyltransf_13: ESCO 53.4 10 0.00022 34.2 2.3 26 830-855 8-33 (70)
151 KOG1734 Predicted RING-contain 52.7 3.5 7.6E-05 45.6 -0.9 56 542-602 222-280 (328)
152 PF14569 zf-UDP: Zinc-binding 52.1 3.5 7.6E-05 37.8 -0.8 58 541-604 6-63 (80)
153 PLN03239 histone acetyltransfe 52.1 20 0.00044 41.3 4.9 32 829-860 215-246 (351)
154 KOG1428 Inhibitor of type V ad 50.9 2.7 5.9E-05 54.7 -2.3 31 573-603 3506-3544(3738)
155 PF13444 Acetyltransf_5: Acety 50.7 32 0.00069 32.2 5.3 25 825-849 76-100 (101)
156 COG5194 APC11 Component of SCF 50.0 4.7 0.0001 37.3 -0.4 56 545-602 21-80 (88)
157 KOG1701 Focal adhesion adaptor 49.9 3.5 7.6E-05 48.1 -1.5 36 646-683 396-431 (468)
158 KOG2747 Histone acetyltransfer 48.1 19 0.00042 42.0 4.0 76 759-852 207-285 (396)
159 PF12261 T_hemolysin: Thermost 48.0 33 0.00071 36.2 5.3 63 826-893 86-150 (179)
160 cd00162 RING RING-finger (Real 47.0 6 0.00013 30.1 -0.2 30 569-600 13-43 (45)
161 PLN00104 MYST -like histone ac 46.8 21 0.00046 42.5 4.1 80 760-856 252-335 (450)
162 PLN02400 cellulose synthase 45.9 17 0.00037 47.2 3.4 60 541-606 33-92 (1085)
163 PRK14852 hypothetical protein; 45.8 60 0.0013 42.4 8.1 63 825-887 119-181 (989)
164 PF04958 AstA: Arginine N-succ 45.3 31 0.00067 39.8 5.1 107 756-882 30-183 (342)
165 KOG2779 N-myristoyl transferas 44.4 67 0.0015 37.3 7.4 127 743-880 80-226 (421)
166 PF10497 zf-4CXXC_R1: Zinc-fin 43.9 11 0.00023 36.4 1.0 49 542-600 5-69 (105)
167 COG3916 LasI N-acyl-L-homoseri 42.9 1.2E+02 0.0026 33.0 8.6 81 801-882 51-158 (209)
168 PLN02638 cellulose synthase A 42.6 16 0.00036 47.4 2.6 60 541-606 14-73 (1079)
169 PF13901 DUF4206: Domain of un 42.5 21 0.00045 38.0 3.0 35 646-681 154-188 (202)
170 TIGR03244 arg_catab_AstA argin 41.4 45 0.00097 38.5 5.5 49 802-850 54-140 (336)
171 PLN02436 cellulose synthase A 41.4 20 0.00043 46.6 3.0 60 541-606 33-92 (1094)
172 TIGR03245 arg_AOST_alph argini 40.4 44 0.00096 38.5 5.3 49 802-850 55-141 (336)
173 KOG1246 DNA-binding protein ju 40.3 21 0.00045 46.0 3.0 48 646-705 157-204 (904)
174 TIGR03243 arg_catab_AOST argin 40.1 46 0.00099 38.4 5.4 49 802-850 54-140 (335)
175 PF13832 zf-HC5HC2H_2: PHD-zin 40.1 15 0.00032 34.8 1.3 31 543-584 54-86 (110)
176 PRK10456 arginine succinyltran 39.5 45 0.00097 38.6 5.2 50 801-850 55-142 (344)
177 PF11793 FANCL_C: FANCL C-term 37.9 14 0.00031 32.9 0.8 34 646-682 4-39 (70)
178 KOG2036 Predicted P-loop ATPas 37.4 27 0.00059 43.5 3.2 29 828-856 615-643 (1011)
179 PF13901 DUF4206: Domain of un 37.3 29 0.00064 36.9 3.1 46 542-600 150-197 (202)
180 KOG1493 Anaphase-promoting com 37.3 5.1 0.00011 36.7 -2.1 59 544-603 20-81 (84)
181 PLN02189 cellulose synthase 37.3 25 0.00053 45.7 2.9 58 542-605 32-89 (1040)
182 KOG0827 Predicted E3 ubiquitin 36.9 7.9 0.00017 44.9 -1.2 47 545-601 5-54 (465)
183 COG0143 MetG Methionyl-tRNA sy 36.9 38 0.00082 41.5 4.3 30 645-682 143-172 (558)
184 PF02591 DUF164: Putative zinc 36.4 12 0.00026 31.6 0.1 34 543-576 21-54 (56)
185 KOG0804 Cytoplasmic Zn-finger 36.1 15 0.00032 43.5 0.7 46 543-600 174-219 (493)
186 PRK01305 arginyl-tRNA-protein 35.6 1.8E+02 0.0039 32.1 8.9 112 743-865 94-205 (240)
187 KOG1298 Squalene monooxygenase 34.1 32 0.0007 40.5 3.0 185 21-245 97-318 (509)
188 KOG1246 DNA-binding protein ju 32.0 32 0.00069 44.4 2.8 49 543-601 154-204 (904)
189 PLN02915 cellulose synthase A 31.4 33 0.00073 44.6 2.8 56 543-604 14-69 (1044)
190 PHA02926 zinc finger-like prot 30.2 25 0.00054 38.4 1.2 59 541-602 167-229 (242)
191 KOG1632 Uncharacterized PHD Zn 29.9 29 0.00064 40.0 1.8 44 664-711 74-119 (345)
192 COG5027 SAS2 Histone acetyltra 29.7 29 0.00063 40.0 1.7 75 759-850 207-285 (395)
193 PRK13361 molybdenum cofactor b 29.2 1.1E+02 0.0024 34.6 6.2 69 251-333 241-310 (329)
194 TIGR02174 CXXU_selWTH selT/sel 28.5 38 0.00083 30.2 1.9 29 40-69 39-67 (72)
195 PF10497 zf-4CXXC_R1: Zinc-fin 26.4 19 0.0004 34.8 -0.5 52 646-705 9-70 (105)
196 KOG1829 Uncharacterized conser 26.0 18 0.00039 44.3 -0.8 36 543-584 339-374 (580)
197 PF10367 Vps39_2: Vacuolar sor 25.8 46 0.001 30.7 2.1 33 542-584 76-108 (109)
198 KOG1701 Focal adhesion adaptor 25.7 68 0.0015 38.0 3.7 8 647-654 427-434 (468)
199 KOG2114 Vacuolar assembly/sort 25.1 28 0.0006 44.1 0.6 39 545-600 841-880 (933)
200 COG5540 RING-finger-containing 25.0 24 0.00052 39.9 0.0 50 541-601 320-370 (374)
201 PF07649 C1_3: C1-like domain; 24.9 20 0.00044 26.6 -0.4 27 647-679 3-29 (30)
202 KOG1081 Transcription factor N 24.5 46 0.001 39.9 2.2 46 542-600 87-132 (463)
203 PF10262 Rdx: Rdx family; Int 24.1 22 0.00047 31.9 -0.4 27 41-68 42-68 (76)
204 PF05301 Mec-17: Touch recepto 23.5 59 0.0013 32.3 2.4 49 835-884 54-103 (120)
205 PF13771 zf-HC5HC2H: PHD-like 22.4 47 0.001 30.1 1.4 32 542-584 34-67 (90)
206 PLN02195 cellulose synthase A 22.1 60 0.0013 42.1 2.6 56 542-603 4-59 (977)
207 KOG3612 PHD Zn-finger protein 22.1 55 0.0012 39.8 2.1 44 556-600 61-107 (588)
208 KOG1642 Ribonuclease, T2 famil 21.6 43 0.00093 37.2 1.1 59 273-331 116-189 (263)
209 smart00184 RING Ring finger. E 21.5 18 0.00038 26.3 -1.3 25 572-598 14-39 (39)
210 KOG0317 Predicted E3 ubiquitin 21.3 28 0.00061 39.1 -0.4 53 539-605 234-286 (293)
211 PF00130 C1_1: Phorbol esters/ 21.1 96 0.0021 25.4 2.8 35 543-584 10-44 (53)
212 PF14545 DBB: Dof, BCAP, and B 21.0 3.2E+02 0.007 28.1 7.0 63 801-896 65-127 (142)
213 KOG4628 Predicted E3 ubiquitin 21.0 51 0.0011 38.2 1.5 46 645-704 230-275 (348)
214 PF07943 PBP5_C: Penicillin-bi 20.5 1.2E+02 0.0026 27.3 3.6 27 811-837 62-88 (91)
215 COG5243 HRD1 HRD ubiquitin lig 20.2 31 0.00066 40.1 -0.4 57 542-601 285-343 (491)
216 TIGR03827 GNAT_ablB putative b 20.0 1.5E+02 0.0032 32.4 4.8 43 843-886 21-63 (266)
No 1
>COG1246 ArgA N-acetylglutamate synthase and related acetyltransferases [Amino acid transport and metabolism]
Probab=99.14 E-value=5.3e-11 Score=118.69 Aligned_cols=91 Identities=18% Similarity=0.231 Sum_probs=79.7
Q ss_pred eecceEEEEEeeCCeEEEEEEEE-EeCCeeEEEeeeEeecCccCCChhHHHHHHHHHHhhhcCccEEEecChhhhHHHHH
Q 002334 799 EFGGMYCAILTVNSSVVSAGILR-VFGQEVAELPLVATSKINHGKGYFQLLFACIEKLLSFLRVKSIVLPAAEEAESIWT 877 (935)
Q Consensus 799 ~f~GfY~~VL~~~~~vVsaA~lr-v~g~~vAElplVAT~~~yRgqG~gr~L~~~IE~~L~~lgV~~LvLpA~~~a~~~w~ 877 (935)
++..|+.+ +.+|.+||||.++ +.+.+++||..|||+|+|||+|+|..|++.++..++.+|++++++.+. . .+-|+
T Consensus 38 ~i~dF~i~--E~~g~viGC~aL~~~~~~~~gE~~~laV~pd~r~~G~G~~Ll~~~~~~Ar~~gi~~lf~LTt-~-~~~~F 113 (153)
T COG1246 38 EIDDFTII--ERDGKVIGCAALHPVLEEDLGELRSLAVHPDYRGSGRGERLLERLLADARELGIKELFVLTT-R-SPEFF 113 (153)
T ss_pred HHhhheee--eeCCcEEEEEeecccCccCeeeEEEEEECHHhcCCCcHHHHHHHHHHHHHHcCCceeeeeec-c-cHHHH
Confidence 45667665 8899999999999 789999999999999999999999999999999999999999999984 2 55666
Q ss_pred hccCcEEcCHHHHHHH
Q 002334 878 DKFGFKKIDPELLSIY 893 (935)
Q Consensus 878 ~kfGF~~i~~~el~~~ 893 (935)
.++||+.++.+++..-
T Consensus 114 ~~~GF~~vd~~~LP~~ 129 (153)
T COG1246 114 AERGFTRVDKDELPEE 129 (153)
T ss_pred HHcCCeECccccCCHH
Confidence 6699999999666543
No 2
>KOG1244 consensus Predicted transcription factor Requiem/NEURO-D4 [Transcription]
Probab=99.13 E-value=1e-11 Score=131.69 Aligned_cols=104 Identities=26% Similarity=0.709 Sum_probs=81.2
Q ss_pred ccCCcccccccCccCCcCcc-cccCCCCceecccCCCcccccccCCCC-----CCCCCCccccccccccccccccccccc
Q 002334 540 KNGLGIICHCCNSEVSPSQF-EAHADGGNLLPCDGCPRAFHKECASLS-----SIPQGDWYCKYCQNMFERKRFLQHDAN 613 (935)
Q Consensus 540 ~~~~~i~C~~C~~eiSpS~F-E~hadgG~Ll~CD~Cp~afH~~CL~L~-----~vPeg~W~Cp~C~~~~~~ek~la~n~n 613 (935)
+.-...+|..|...- .- ....-..+|+.|..|+++-|..||..+ .|....|+|..|+.
T Consensus 220 ~a~Pn~YCDFclgds---r~nkkt~~peelvscsdcgrsghpsclqft~nm~~avk~yrwqcieck~------------- 283 (336)
T KOG1244|consen 220 IAQPNPYCDFCLGDS---RENKKTGMPEELVSCSDCGRSGHPSCLQFTANMIAAVKTYRWQCIECKY------------- 283 (336)
T ss_pred cccCCcccceecccc---ccccccCCchhhcchhhcCCCCCcchhhhhHHHHHHHHhheeeeeecce-------------
Confidence 334556799997410 00 001135699999999999999999732 45677899999983
Q ss_pred cccccccccccchhhhhhhhhhhhccccccCCcceeccCCCCCCCCCCCCceeeCCCCCCcCCCCCCCCCcCCccCCCCC
Q 002334 614 AVEAGRVSGVDSVEQITKRCIRIVKNLEAELSGCLLCRGCDFSKSGFGPRTILLCDQCEREFHVGCLKKHKMADLRELPK 693 (935)
Q Consensus 614 aia~gr~~Gvd~ieqi~~R~iR~vkd~e~e~~~C~iC~~~df~~sgf~~~tLL~CDqCdr~YHv~CL~p~~~~~L~evP~ 693 (935)
|.+|+-++ +++.+|+||-|++.||++||.| +|.+.|+
T Consensus 284 ---------------------------------csicgtse------nddqllfcddcdrgyhmyclsp----pm~eppe 320 (336)
T KOG1244|consen 284 ---------------------------------CSICGTSE------NDDQLLFCDDCDRGYHMYCLSP----PMVEPPE 320 (336)
T ss_pred ---------------------------------eccccCcC------CCceeEeecccCCceeeEecCC----CcCCCCC
Confidence 99999764 6789999999999999999998 7889999
Q ss_pred CCceecCCcc
Q 002334 694 GKWFCCMDCS 703 (935)
Q Consensus 694 g~WfCc~~C~ 703 (935)
|.|-| .-|-
T Consensus 321 gswsc-~KOG 329 (336)
T KOG1244|consen 321 GSWSC-HLCL 329 (336)
T ss_pred CchhH-HHHH
Confidence 99999 6663
No 3
>PRK10314 putative acyltransferase; Provisional
Probab=99.05 E-value=7.5e-10 Score=110.23 Aligned_cols=115 Identities=16% Similarity=0.126 Sum_probs=86.6
Q ss_pred HHHHHHHhhhhcCCCcccCCCCCCccccccccccCCCcee--cceEEEEEeeCCeEEEEEEEEEeCC--eeEEEeeeEee
Q 002334 761 LLSQAVAIFHDCFDPIVDSISGRDLIPSMVYGRNLRGQEF--GGMYCAILTVNSSVVSAGILRVFGQ--EVAELPLVATS 836 (935)
Q Consensus 761 kLa~AL~If~EcF~Pivd~rSgrDLIp~MVygr~~~~~~f--~GfY~~VL~~~~~vVsaA~lrv~g~--~vAElplVAT~ 836 (935)
.+..|+.+=++-|..- -+.+ |. ++.+.|. ..++ +++..++++||+|+++..+. ..++|-.|||+
T Consensus 16 ~~~~~~~lR~~VF~~e----q~~~------~~-e~D~~d~~~~~~h-~~~~~~~~~vg~~r~~~~~~~~~~~~i~rv~V~ 83 (153)
T PRK10314 16 QLYALLQLRCAVFVVE----QNCP------YQ-DIDGDDLTGDNRH-ILGWKNDELVAYARILKSDDDLEPVVIGRVIVS 83 (153)
T ss_pred HHHHHHHHHHHHhhhh----cCCC------cc-ccCCCCCCCCcEE-EEEEECCEEEEEEEEecCCCCCCCEEEEEEEEC
Confidence 4667777777777321 1111 11 2222232 1233 34567899999999987543 36899999999
Q ss_pred cCccCCChhHHHHHHHHHHhhhc-CccEEEecChhhhHHHHHhccCcEEcCHH
Q 002334 837 KINHGKGYFQLLFACIEKLLSFL-RVKSIVLPAAEEAESIWTDKFGFKKIDPE 888 (935)
Q Consensus 837 ~~yRgqG~gr~L~~~IE~~L~~l-gV~~LvLpA~~~a~~~w~~kfGF~~i~~~ 888 (935)
++|||+|+|+.||..+++.++.. +...++|.|...|++||.+ |||..+++.
T Consensus 84 ~~~rG~GiG~~Lm~~~~~~~~~~~~~~~i~L~a~~~a~~fY~k-~GF~~~g~~ 135 (153)
T PRK10314 84 EALRGEKVGQQLMSKTLESCTRHWPDKPVYLGAQAHLQNFYQS-FGFIPVTEV 135 (153)
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHCCCCcEEEehHHHHHHHHHH-CCCEECCCc
Confidence 99999999999999999998875 7889999999999999999 999999873
No 4
>PF13508 Acetyltransf_7: Acetyltransferase (GNAT) domain; PDB: 3EY5_A 3FRM_B 3D8P_B 3GY9_A 3GYA_A 3S6F_A 2Q7B_A 1CM0_B 1XEB_B 1Y7R_A ....
Probab=99.04 E-value=2e-09 Score=94.40 Aligned_cols=77 Identities=18% Similarity=0.138 Sum_probs=67.1
Q ss_pred eEEEEEeeCCeEEEEEEEEEeCCeeEEEeeeEeecCccCCChhHHHHHHHHHHhhhcCccEEEecChhhhHHHHHhccCc
Q 002334 803 MYCAILTVNSSVVSAGILRVFGQEVAELPLVATSKINHGKGYFQLLFACIEKLLSFLRVKSIVLPAAEEAESIWTDKFGF 882 (935)
Q Consensus 803 fY~~VL~~~~~vVsaA~lrv~g~~vAElplVAT~~~yRgqG~gr~L~~~IE~~L~~lgV~~LvLpA~~~a~~~w~~kfGF 882 (935)
-+.++++.++++||++.+...++ .+.|..+||+++|||||+|+.||..+.+.+.. ..+++.+.+.+.+||.+ +||
T Consensus 3 ~~~~~~~~~~~ivG~~~~~~~~~-~~~i~~~~v~~~~rg~Gig~~ll~~~~~~~~~---~~i~l~~~~~~~~fY~~-~GF 77 (79)
T PF13508_consen 3 ERFFVAEDDGEIVGFIRLWPNED-FAYIGYLAVDPEYRGKGIGSKLLNYLLEKAKS---KKIFLFTNPAAIKFYEK-LGF 77 (79)
T ss_dssp EEEEEEEETTEEEEEEEEEETTT-EEEEEEEEE-GGGTTSSHHHHHHHHHHHHHTC---SEEEEEEEHHHHHHHHH-TTE
T ss_pred cEEEEEEECCEEEEEEEEEEcCC-EEEEEEEEECHHHcCCCHHHHHHHHHHHHcCC---CcEEEEEcHHHHHHHHH-CcC
Confidence 35677899999999999977665 89999999999999999999999999888854 56778888899999999 999
Q ss_pred EE
Q 002334 883 KK 884 (935)
Q Consensus 883 ~~ 884 (935)
++
T Consensus 78 ~~ 79 (79)
T PF13508_consen 78 EE 79 (79)
T ss_dssp EE
T ss_pred CC
Confidence 85
No 5
>KOG4323 consensus Polycomb-like PHD Zn-finger protein [General function prediction only]
Probab=98.98 E-value=3.4e-10 Score=129.18 Aligned_cols=211 Identities=18% Similarity=0.251 Sum_probs=138.6
Q ss_pred CCcccccccCccCCcCcccccCCCCceecccCCCcccccccCCCCCCCCCCccccccccccccccccccccccccccccc
Q 002334 542 GLGIICHCCNSEVSPSQFEAHADGGNLLPCDGCPRAFHKECASLSSIPQGDWYCKYCQNMFERKRFLQHDANAVEAGRVS 621 (935)
Q Consensus 542 ~~~i~C~~C~~eiSpS~FE~hadgG~Ll~CD~Cp~afH~~CL~L~~vPeg~W~Cp~C~~~~~~ek~la~n~naia~gr~~ 621 (935)
.+...|.+|..+... .+.++..|+.|.++||+.|.-......+.|.+..|..........+ ...|+..
T Consensus 81 ~~e~~~nv~~s~~~~-------p~~e~~~~~r~~~~~~q~~~i~~~~~~~~~~~~~c~~~~~~~~g~a-----~K~g~~a 148 (464)
T KOG4323|consen 81 SSELNPNVLTSETVL-------PENEKVICGRCKSGYHQGCNIPRFPSLDIGESTECVFPIFSQEGGA-----LKKGRLA 148 (464)
T ss_pred ccccCCccccccccc-------CchhhhhhhhhccCcccccCccCcCcCCcccccccccccccccccc-----ccccccc
Confidence 455678888865332 4678999999999999999854333446799988886532111111 1112211
Q ss_pred ccc-chhhhhhhhhhhhcccc-ccCCcceeccCCCCCCCCCCCCceeeCCCCCCcCCCCCCCCCcCCccCCCCCCCceec
Q 002334 622 GVD-SVEQITKRCIRIVKNLE-AELSGCLLCRGCDFSKSGFGPRTILLCDQCEREFHVGCLKKHKMADLRELPKGKWFCC 699 (935)
Q Consensus 622 Gvd-~ieqi~~R~iR~vkd~e-~e~~~C~iC~~~df~~sgf~~~tLL~CDqCdr~YHv~CL~p~~~~~L~evP~g~WfCc 699 (935)
+.. .+.. . ....|.. .-+..|.+|....+ + ....||+|+.|..|||..|.+|.....+..-|...|||
T Consensus 149 ~~~l~y~~-~----~l~wD~~~~~n~qc~vC~~g~~---~-~~NrmlqC~~C~~~fHq~Chqp~i~~~l~~D~~~~w~C- 218 (464)
T KOG4323|consen 149 RPSLPYPE-A----SLDWDSGHKVNLQCSVCYCGGP---G-AGNRMLQCDKCRQWYHQACHQPLIKDELAGDPFYEWFC- 218 (464)
T ss_pred cccccCcc-c----ccccCccccccceeeeeecCCc---C-ccceeeeecccccHHHHHhccCCCCHhhccCccceEee-
Confidence 100 0000 0 0000000 01123888886542 2 23489999999999999999987544455557789999
Q ss_pred CCccchhHHHHHhhhhccccCchhhHh--Hhh--hhccCccccccccCcceeEcc-CCCCC---hhhHHHHHHHHHhhhh
Q 002334 700 MDCSRINSVLQNLLVQEAEKLPEFHLN--AIK--KYAGNSLETVSDIDVRWRLLS-GKAAT---PETRLLLSQAVAIFHD 771 (935)
Q Consensus 700 ~~C~~i~~~LqkLva~g~e~lp~sll~--~I~--k~~e~gle~~~~~dikWqLLs-gk~~s---~e~~skLa~AL~If~E 771 (935)
..|..-...+.++-++|++.++..+.+ .+. +|+..-+++....+-.|..|. |...+ .+..+.+..|++-...
T Consensus 219 ~~C~~~~~~~~r~t~~~~dv~~lal~~~~~~~~~k~~~~~~ei~~f~e~~~~slp~~e~~tsp~~~~~~~~lsal~~~~~ 298 (464)
T KOG4323|consen 219 DVCNRGPKKVPRLTLRWADVLHLALYNLKPMLKKKYFKSLVEILLFCEESWPSLPFYEPKTSPVTERSSSLLSALSSYKS 298 (464)
T ss_pred hhhccchhhccccccccccccchhhhhhhhhhccCCcccHHHHHHHHhhccccccccCCccccccchhhHHHHhhhcccc
Confidence 899999999999999999998876633 333 677766677777788898876 55544 4567788889888887
Q ss_pred cCC
Q 002334 772 CFD 774 (935)
Q Consensus 772 cF~ 774 (935)
.|.
T Consensus 299 ~f~ 301 (464)
T KOG4323|consen 299 RFV 301 (464)
T ss_pred ccc
Confidence 663
No 6
>PF00583 Acetyltransf_1: Acetyltransferase (GNAT) family; InterPro: IPR000182 The N-acetyltransferases (NAT) (EC 2.3.1.-) are enzymes that use acetyl coenzyme A (CoA) to transfer an acetyl group to a substrate, a reaction implicated in various functions from bacterial antibiotic resistance to mammalian circadian rhythm and chromatin remodeling. The Gcn5-related N-acetyltransferases (GNAT) catalyze the transfer of the acetyl from the CoA donor to a primary amine of the acceptor. The GNAT proteins share a domain composed of four conserved sequence motifs A-D [, ]. This GNAT domain is named after yeast GCN5 (from General Control Nonrepressed) and related histone acetyltransferases (HATs) like Hat1 and PCAF. HATs acetylate lysine residues of amino terminal histone tails, resulting in transcription activation. Another category of GNAT, the aminoglycoside N-acetyltransferases, confer antibiotic resistance by catalyzing the acetylation of amino groups in aminoglycoside antibiotics []. GNAT proteins can also have anabolic and catabolic functions in both prokaryotes and eukaryotes [, , , , ]. The acetyltransferase/GNAT domain forms a structurally conserved fold of 6 to 7 beta strands (B) and 4 helices (H) in the topology B1-H1-H2-B2-B3-B4-H3-B5-H4-B6, followed by a C-terminal strand which may be from the same monomer or contributed by another [, ]. Motifs D (B2-B3), A (B4-H3) and B (B5-H4) are collectively called the HAT core [, , ], while the N-terminal motif C (B1-H1) is less conserved. Some proteins known to contain a GNAT domain: Yeast GCN5 and Hat1, which are histone acetyltransferases (EC 2.3.1.48). Human PCAF, a histone acetyltransferase. Mammalian serotonin N-acetyltransferase (SNAT) or arylalkylamine NAT (AANAT), which acetylates serotonin into a circadian neurohormone that may participate in light-dark rhythms, and human mood and behavior. Mammalian glucosamine 6-phosphate N-acetyltransferase (GNA1) (EC 2.3.1.4). Escherichia coli rimI and rimJ, which acetylate the N-terminal alanine of ribosomal proteins S18 and S5, respectively (EC 2.3.1.128). Mycobacterium tuberculosis aminoglycoside 2'-N-acetyltransferase (aac), which acetylates the 2' hydroxyl or amino group of a broad spectrum of aminoglycoside antibiotics. Bacillus subtilis bltD and paiA, which acetylate spermine and spermidine. This entry represents the entire GNAT domain.; GO: 0008080 N-acetyltransferase activity, 0008152 metabolic process; PDB: 3T9Y_A 2R7H_B 2OZH_A 1Y9W_B 1VKC_B 2OH1_C 3R9E_B 3R9G_B 3R9F_A 3R96_A ....
Probab=98.97 E-value=3.3e-09 Score=92.15 Aligned_cols=74 Identities=20% Similarity=0.250 Sum_probs=67.9
Q ss_pred eeCCeEEEEEEEEEeCC-----eeEEEeeeEeecCccCCChhHHHHHHHHHHhhhcCccEEEecChhh---hHHHHHhcc
Q 002334 809 TVNSSVVSAGILRVFGQ-----EVAELPLVATSKINHGKGYFQLLFACIEKLLSFLRVKSIVLPAAEE---AESIWTDKF 880 (935)
Q Consensus 809 ~~~~~vVsaA~lrv~g~-----~vAElplVAT~~~yRgqG~gr~L~~~IE~~L~~lgV~~LvLpA~~~---a~~~w~~kf 880 (935)
+.+|++||++.+++... ..+.|..++|+++|||||+|+.|++.+++.++..|+..|.+....+ +..||.+ +
T Consensus 2 ~~~~~ivg~~~~~~~~~~~~~~~~~~i~~~~v~~~~r~~Gig~~L~~~~~~~~~~~g~~~i~~~~~~~n~~~~~~~~k-~ 80 (83)
T PF00583_consen 2 EEDGQIVGFASLRPPPEPFDHGNHAYIHRLAVDPEYRGQGIGSKLLQAAEEWARKRGIKRIYLDVSPDNPAARRFYEK-L 80 (83)
T ss_dssp EETTEEEEEEEEEEEETTTTTTTEEEEEEEEECGGGTTSSHHHHHHHHHHHHHHHTTESEEEEEEETTGHHHHHHHHH-T
T ss_pred cCCCEEEEEEEEEECCCccccCCEEEEEEEEEcHHHhhCCCchhhhhhhhhhHHhcCccEEEEEEeCCCHHHHHHHHH-c
Confidence 67999999999999886 4999999999999999999999999999999999999998887654 5699998 9
Q ss_pred CcE
Q 002334 881 GFK 883 (935)
Q Consensus 881 GF~ 883 (935)
||+
T Consensus 81 Gf~ 83 (83)
T PF00583_consen 81 GFE 83 (83)
T ss_dssp TEE
T ss_pred CCC
Confidence 996
No 7
>KOG0956 consensus PHD finger protein AF10 [General function prediction only]
Probab=98.96 E-value=3.2e-10 Score=131.73 Aligned_cols=143 Identities=22% Similarity=0.488 Sum_probs=92.8
Q ss_pred CCceeccc--CCCcccccccCCCCCCCCCCccccccccc---------cc--ccccccccccc----------ccccccc
Q 002334 565 GGNLLPCD--GCPRAFHKECASLSSIPQGDWYCKYCQNM---------FE--RKRFLQHDANA----------VEAGRVS 621 (935)
Q Consensus 565 gG~Ll~CD--~Cp~afH~~CL~L~~vPeg~W~Cp~C~~~---------~~--~ek~la~n~na----------ia~gr~~ 621 (935)
...|+.|| .|.-+.|+.|+++.+||.|.|||..|... ++ +.+++....|. +..-+|.
T Consensus 19 eNPLVYCDG~nCsVAVHQaCYGIvqVPtGpWfCrKCesqeraarvrCeLCP~kdGALKkTDn~GWAHVVCALYIPEVrFg 98 (900)
T KOG0956|consen 19 ENPLVYCDGHNCSVAVHQACYGIVQVPTGPWFCRKCESQERAARVRCELCPHKDGALKKTDNGGWAHVVCALYIPEVRFG 98 (900)
T ss_pred cCceeeecCCCceeeeehhcceeEecCCCchhhhhhhhhhhhccceeecccCcccceecccCCCceEEEEEeeccceeec
Confidence 45899999 49999999999999999999999999532 22 23333333221 2233455
Q ss_pred cccchhhhhhhhhhhhccccccCCcceeccCCCCCCCCCCCCceeeCC--CCCCcCCCCCCCCCcCCccCCC--CCCCce
Q 002334 622 GVDSVEQITKRCIRIVKNLEAELSGCLLCRGCDFSKSGFGPRTILLCD--QCEREFHVGCLKKHKMADLREL--PKGKWF 697 (935)
Q Consensus 622 Gvd~ieqi~~R~iR~vkd~e~e~~~C~iC~~~df~~sgf~~~tLL~CD--qCdr~YHv~CL~p~~~~~L~ev--P~g~Wf 697 (935)
.|...|+|.-..+.+ +.-+..||||.+-+-. .....+..|.|. .|.+.||+.|.+..++-.-++. -+.--|
T Consensus 99 NV~TMEPIiLq~VP~----dRfnKtCYIC~E~Grp-nkA~~GACMtCNKs~CkqaFHVTCAQ~~GLLCEE~gn~~dNVKY 173 (900)
T KOG0956|consen 99 NVHTMEPIILQDVPH----DRFNKTCYICNEEGRP-NKAAKGACMTCNKSGCKQAFHVTCAQRAGLLCEEEGNISDNVKY 173 (900)
T ss_pred ccccccceeeccCch----hhhcceeeeecccCCc-cccccccceecccccchhhhhhhHhhhhccceecccccccccee
Confidence 555555553222111 2234569999876421 122356678997 7999999999998765322221 112247
Q ss_pred ecCCccchhHHHHHhh
Q 002334 698 CCMDCSRINSVLQNLL 713 (935)
Q Consensus 698 Cc~~C~~i~~~LqkLv 713 (935)
| .+|+..+.+|.+--
T Consensus 174 C-GYCk~HfsKlkk~~ 188 (900)
T KOG0956|consen 174 C-GYCKYHFSKLKKSP 188 (900)
T ss_pred c-hhHHHHHHHhhcCC
Confidence 8 89999999888753
No 8
>PF13673 Acetyltransf_10: Acetyltransferase (GNAT) domain; PDB: 2FIW_A 1BOB_A 3FNC_B 3EXN_A.
Probab=98.90 E-value=9.6e-09 Score=94.71 Aligned_cols=74 Identities=18% Similarity=0.227 Sum_probs=64.9
Q ss_pred eEEEEEeeCCeEEEEEEEEEeCCeeEEEeeeEeecCccCCChhHHHHHHHHHHhhhcCccEEEecChhhhHHHHHhccCc
Q 002334 803 MYCAILTVNSSVVSAGILRVFGQEVAELPLVATSKINHGKGYFQLLFACIEKLLSFLRVKSIVLPAAEEAESIWTDKFGF 882 (935)
Q Consensus 803 fY~~VL~~~~~vVsaA~lrv~g~~vAElplVAT~~~yRgqG~gr~L~~~IE~~L~~lgV~~LvLpA~~~a~~~w~~kfGF 882 (935)
...+|++.+|++||.+.++ .-++|..+.|+|+|||+|+|++||..+++.++. |++.|.+.+...|.+||.+ +||
T Consensus 44 ~~~~v~~~~~~ivG~~~~~----~~~~i~~l~v~p~~r~~Gig~~Ll~~~~~~~~~-~~~~l~~~~~~~a~~~y~~-~GF 117 (117)
T PF13673_consen 44 HTIFVAEEGGEIVGFAWLE----PDGEISHLYVLPEYRGRGIGRALLDAAEKEAKD-GIRRLTVEANERARRFYRK-LGF 117 (117)
T ss_dssp CEEEEEEETTEEEEEEEEE----TCEEEEEEEE-GGGTTSSHHHHHHHHHHHHHTT-TCEEEEEEC-HHHHHHHHH-TT-
T ss_pred CEEEEEEECCEEEEEEEEc----CCCeEEEEEEChhhcCCcHHHHHHHHHHHHHHc-CCcEEEEEeCHHHHHHHHh-CCC
Confidence 5667789999999999986 245599999999999999999999999999988 9999999999999999999 998
No 9
>KOG1512 consensus PHD Zn-finger protein [General function prediction only]
Probab=98.84 E-value=7.4e-10 Score=118.28 Aligned_cols=81 Identities=31% Similarity=0.784 Sum_probs=68.4
Q ss_pred CCCceecccCCCcccccccCCCC-----CCCCCCccccccccccccccccccccccccccccccccchhhhhhhhhhhhc
Q 002334 564 DGGNLLPCDGCPRAFHKECASLS-----SIPQGDWYCKYCQNMFERKRFLQHDANAVEAGRVSGVDSVEQITKRCIRIVK 638 (935)
Q Consensus 564 dgG~Ll~CD~Cp~afH~~CL~L~-----~vPeg~W~Cp~C~~~~~~ek~la~n~naia~gr~~Gvd~ieqi~~R~iR~vk 638 (935)
....+++|..|..++|..|+.+. .+....|.|..|+-
T Consensus 275 r~~S~I~C~~C~~~~HP~Ci~M~~elv~~~KTY~W~C~~C~l-------------------------------------- 316 (381)
T KOG1512|consen 275 RRNSWIVCKPCATRPHPYCVAMIPELVGQYKTYFWKCSSCEL-------------------------------------- 316 (381)
T ss_pred hhccceeecccccCCCCcchhcCHHHHhHHhhcchhhcccHh--------------------------------------
Confidence 34689999999999999999743 34557899999972
Q ss_pred cccccCCcceeccCCCCCCCCCCCCceeeCCCCCCcCCCCCCCCCcCCccCCCCCCCceecCCc
Q 002334 639 NLEAELSGCLLCRGCDFSKSGFGPRTILLCDQCEREFHVGCLKKHKMADLRELPKGKWFCCMDC 702 (935)
Q Consensus 639 d~e~e~~~C~iC~~~df~~sgf~~~tLL~CDqCdr~YHv~CL~p~~~~~L~evP~g~WfCc~~C 702 (935)
|.+|++.. .+..+++||.|++.||..|+ .|..+|.|.|.|-..|
T Consensus 317 --------C~IC~~P~------~E~E~~FCD~CDRG~HT~CV------GL~~lP~G~WICD~~C 360 (381)
T KOG1512|consen 317 --------CRICLGPV------IESEHLFCDVCDRGPHTLCV------GLQDLPRGEWICDMRC 360 (381)
T ss_pred --------hhccCCcc------cchheeccccccCCCCcccc------ccccccCccchhhhHH
Confidence 99999764 46789999999999999999 6888999999995557
No 10
>PTZ00330 acetyltransferase; Provisional
Probab=98.77 E-value=4.5e-08 Score=94.02 Aligned_cols=83 Identities=14% Similarity=0.207 Sum_probs=72.1
Q ss_pred EEEEEeeCCeEEEEEEEEEeC------CeeEEEeeeEeecCccCCChhHHHHHHHHHHhhhcCccEEEecChhhhHHHHH
Q 002334 804 YCAILTVNSSVVSAGILRVFG------QEVAELPLVATSKINHGKGYFQLLFACIEKLLSFLRVKSIVLPAAEEAESIWT 877 (935)
Q Consensus 804 Y~~VL~~~~~vVsaA~lrv~g------~~vAElplVAT~~~yRgqG~gr~L~~~IE~~L~~lgV~~LvLpA~~~a~~~w~ 877 (935)
+.++...+|++||.+.+.... ...++|-.+.|+++|||+|+|+.||..+++.++..|+.++++.+...|..||+
T Consensus 53 ~~~~~~~~~~~vG~~~~~~~~~~~~~~~~~~~i~~~~V~~~~rg~Gig~~l~~~~~~~a~~~~~~~l~l~~n~~a~~~y~ 132 (147)
T PTZ00330 53 RVFVHSPTQRIVGTASLFVEPKFTRGGKCVGHIEDVVVDPSYRGQGLGRALISDLCEIARSSGCYKVILDCTEDMVAFYK 132 (147)
T ss_pred EEEEEeCCCEEEEEEEEEeccccccCCCceEEEEEEEECHHHcCCCHHHHHHHHHHHHHHHCCCCEEEEecChHHHHHHH
Confidence 345556789999999986532 23678889999999999999999999999999999999999999999999999
Q ss_pred hccCcEEcCH
Q 002334 878 DKFGFKKIDP 887 (935)
Q Consensus 878 ~kfGF~~i~~ 887 (935)
+ +||.....
T Consensus 133 k-~GF~~~~~ 141 (147)
T PTZ00330 133 K-LGFRACER 141 (147)
T ss_pred H-CCCEEece
Confidence 9 99998763
No 11
>PRK10146 aminoalkylphosphonic acid N-acetyltransferase; Provisional
Probab=98.74 E-value=3.6e-08 Score=94.38 Aligned_cols=79 Identities=14% Similarity=0.091 Sum_probs=68.5
Q ss_pred EEEeeCCeEEEEEEEEEeC-----CeeEEEeeeEeecCccCCChhHHHHHHHHHHhhhcCccEEEecCh---hhhHHHHH
Q 002334 806 AILTVNSSVVSAGILRVFG-----QEVAELPLVATSKINHGKGYFQLLFACIEKLLSFLRVKSIVLPAA---EEAESIWT 877 (935)
Q Consensus 806 ~VL~~~~~vVsaA~lrv~g-----~~vAElplVAT~~~yRgqG~gr~L~~~IE~~L~~lgV~~LvLpA~---~~a~~~w~ 877 (935)
+|++.++++||.+.++... ...++|..++|+++|||||+|+.||..+++.++..|...+.|.+. ..|..||+
T Consensus 50 ~v~~~~~~ivG~~~~~~~~~~~~~~~~~~i~~l~v~p~~rg~GiG~~Ll~~~~~~a~~~~~~~i~l~~~~~n~~a~~fY~ 129 (144)
T PRK10146 50 HLALLDGEVVGMIGLHLQFHLHHVNWIGEIQELVVMPQARGLNVGSKLLAWAEEEARQAGAEMTELSTNVKRHDAHRFYL 129 (144)
T ss_pred EEEEECCEEEEEEEEEecccccccchhheeheeEECHHHcCCCHHHHHHHHHHHHHHHcCCcEEEEecCCCchHHHHHHH
Confidence 4567899999999987642 225789999999999999999999999999999999999998865 47999999
Q ss_pred hccCcEEc
Q 002334 878 DKFGFKKI 885 (935)
Q Consensus 878 ~kfGF~~i 885 (935)
+ +||...
T Consensus 130 ~-~Gf~~~ 136 (144)
T PRK10146 130 R-EGYEQS 136 (144)
T ss_pred H-cCCchh
Confidence 9 999765
No 12
>PLN02706 glucosamine 6-phosphate N-acetyltransferase
Probab=98.72 E-value=7.2e-08 Score=93.61 Aligned_cols=82 Identities=13% Similarity=0.272 Sum_probs=69.3
Q ss_pred EEEEEee--CCeEEEEEEEEEeC------CeeEEEeeeEeecCccCCChhHHHHHHHHHHhhhcCccEEEecChhhhHHH
Q 002334 804 YCAILTV--NSSVVSAGILRVFG------QEVAELPLVATSKINHGKGYFQLLFACIEKLLSFLRVKSIVLPAAEEAESI 875 (935)
Q Consensus 804 Y~~VL~~--~~~vVsaA~lrv~g------~~vAElplVAT~~~yRgqG~gr~L~~~IE~~L~~lgV~~LvLpA~~~a~~~ 875 (935)
|.++.+. ++++||.+.+++.. ..++.|--++|.++|||||+|+.|++++++.++.+|+++|++....+...|
T Consensus 54 ~~~~~~~~~~~~ivG~~~~~~~~~~~~~~~~~~~i~~i~V~~~~rg~GiG~~ll~~~~~~a~~~g~~~i~l~~~~~N~~~ 133 (150)
T PLN02706 54 LICVIEDAASGRIIATGSVFVERKFIRNCGKVGHIEDVVVDSAARGKGLGKKIIEALTEHARSAGCYKVILDCSEENKAF 133 (150)
T ss_pred EEEEEEeCCCCcEEEEEEEEEEeecccCCCcEEEEEEEEECHHHcCCCHHHHHHHHHHHHHHHcCCCEEEEEeccccHHH
Confidence 3444444 68999999885432 256778889999999999999999999999999999999999998888899
Q ss_pred HHhccCcEEcC
Q 002334 876 WTDKFGFKKID 886 (935)
Q Consensus 876 w~~kfGF~~i~ 886 (935)
|.+ +||...+
T Consensus 134 y~k-~GF~~~g 143 (150)
T PLN02706 134 YEK-CGYVRKE 143 (150)
T ss_pred HHH-CcCEEeh
Confidence 998 9999754
No 13
>PLN02825 amino-acid N-acetyltransferase
Probab=98.70 E-value=6.6e-08 Score=113.53 Aligned_cols=104 Identities=21% Similarity=0.304 Sum_probs=84.7
Q ss_pred EEEeeCCeEEEEEEEEEeCC-eeEEEeeeEeecCccCCChhHHHHHHHHHHhhhcCccEEEecChhhhHHHHHhccCcEE
Q 002334 806 AILTVNSSVVSAGILRVFGQ-EVAELPLVATSKINHGKGYFQLLFACIEKLLSFLRVKSIVLPAAEEAESIWTDKFGFKK 884 (935)
Q Consensus 806 ~VL~~~~~vVsaA~lrv~g~-~vAElplVAT~~~yRgqG~gr~L~~~IE~~L~~lgV~~LvLpA~~~a~~~w~~kfGF~~ 884 (935)
+|++.|+++||++.+..+.. +.+||-.|||+++|||+|+|++||+++|+.+++.|+++|++.+ ..+..||.+ +||..
T Consensus 410 ~V~e~Dg~IVG~aal~~~~~~~~aEI~~laV~P~yRGkGiG~~LL~~le~~Ar~~G~~~L~Llt-t~a~~fY~k-~GF~~ 487 (515)
T PLN02825 410 VVVEREGSIIACAALFPFFEEKCGEVAAIAVSPECRGQGQGDKLLDYIEKKAASLGLEKLFLLT-TRTADWFVR-RGFSE 487 (515)
T ss_pred EEEEECCEEEEEEEEEeecCCCcEEEEEEEECHHHcCCCHHHHHHHHHHHHHHHCCCCEEEEEe-CcHHHHHHH-CCCEE
Confidence 35689999999999877654 6899999999999999999999999999999999999999876 467788877 99999
Q ss_pred cCHHHHHHHHhhCCceeeeCCCeeeeecc
Q 002334 885 IDPELLSIYRKRCSQLVTFKGTSMLQKRV 913 (935)
Q Consensus 885 i~~~el~~~~~~~~~l~~F~gT~mLqK~l 913 (935)
.+.+++..-|+..++.- .++-.+-|.|
T Consensus 488 ~~~~~lp~~~~~~yn~~--r~sk~~~k~l 514 (515)
T PLN02825 488 CSIESLPEARRKRINLS--RGSKYYMKKL 514 (515)
T ss_pred eChhhCCHHHHhhcCcc--CCcEEEEEec
Confidence 99988877766533321 4444455544
No 14
>PF15446 zf-PHD-like: PHD/FYVE-zinc-finger like domain
Probab=98.70 E-value=1.5e-08 Score=101.97 Aligned_cols=133 Identities=19% Similarity=0.378 Sum_probs=81.9
Q ss_pred cccccCccCCcCcccccCCCCceecccCCCcccccccCCC--------CCCCCCC--ccccccccccccccccccccccc
Q 002334 546 ICHCCNSEVSPSQFEAHADGGNLLPCDGCPRAFHKECASL--------SSIPQGD--WYCKYCQNMFERKRFLQHDANAV 615 (935)
Q Consensus 546 ~C~~C~~eiSpS~FE~hadgG~Ll~CD~Cp~afH~~CL~L--------~~vPeg~--W~Cp~C~~~~~~ek~la~n~nai 615 (935)
.|..|......+ ..|.|+.|.||..+||+.||+. ++|.++. ..|..|..-.+.++..++.....
T Consensus 1 ~C~~C~~~g~~~------~kG~Lv~CQGCs~sYHk~CLG~Rs~ReHlVTKVg~d~FVLQCr~Cig~~~kKD~~aP~~~~C 74 (175)
T PF15446_consen 1 TCDTCGYEGDDR------NKGPLVYCQGCSSSYHKACLGPRSQREHLVTKVGDDDFVLQCRRCIGIAHKKDPRAPHHGMC 74 (175)
T ss_pred CcccccCCCCCc------cCCCeEEcCccChHHHhhhcCCccccceeeEEEcCCceEEechhhcChhhcccCCCCCCCcc
Confidence 377775432221 5789999999999999999973 4555544 78999987777777777766655
Q ss_pred cccccccccchhhhhhhhhhhhccccccCCcceeccCCCCCCCCCCCCceeeCCCCCCcCCCCCCCCCc
Q 002334 616 EAGRVSGVDSVEQITKRCIRIVKNLEAELSGCLLCRGCDFSKSGFGPRTILLCDQCEREFHVGCLKKHK 684 (935)
Q Consensus 616 a~gr~~Gvd~ieqi~~R~iR~vkd~e~e~~~C~iC~~~df~~sgf~~~tLL~CDqCdr~YHv~CL~p~~ 684 (935)
......|....+--.....+.++....++++=...-..+....+..+..|+.|..|.++||+..|++.+
T Consensus 75 ~~C~~~G~~c~pfr~r~T~kQEe~~ReeNgG~DPit~Vd~~lvnN~~nVLFRC~~C~RawH~~HLP~~~ 143 (175)
T PF15446_consen 75 QQCKKPGPSCKPFRPRKTPKQEEKLREENGGVDPITPVDPELVNNPDNVLFRCTSCHRAWHFEHLPPPS 143 (175)
T ss_pred cccCCCCCCCcccCCCCCcHHHHHHHHHcCCCCCCccCCHHHccChhheEEecCCccceeehhhCCCCc
Confidence 544444443322111111222222223333322232333333344567789999999999999998853
No 15
>cd02169 Citrate_lyase_ligase Citrate lyase ligase. Citrate lyase ligase, also known as [Citrate (pro-3S)-lyase] ligase, is responsible for acetylation of the (2-(5''-phosphoribosyl)-3'-dephosphocoenzyme-A) prosthetic group of the gamma subunit of citrate lyase, converting the inactive thiol form of this enzyme to the active form. The acetylation of 1 molecule of deacetyl-citrate lyase to enzymatically active citrate lyase requires 6 molecules of ATP. The Adenylylyltranferase activity of the enzyme involves the formation of AMP and and pyrophosphate in the acetylation reaction.
Probab=98.69 E-value=5.1e-08 Score=107.55 Aligned_cols=74 Identities=15% Similarity=0.201 Sum_probs=67.6
Q ss_pred EEeeCCeEEEEEEEEEeCCeeEEEeeeEeecCccCCChhHHHHHHHHHHhhhcCccEEEecChhhhHHHHHhccCcEEcC
Q 002334 807 ILTVNSSVVSAGILRVFGQEVAELPLVATSKINHGKGYFQLLFACIEKLLSFLRVKSIVLPAAEEAESIWTDKFGFKKID 886 (935)
Q Consensus 807 VL~~~~~vVsaA~lrv~g~~vAElplVAT~~~yRgqG~gr~L~~~IE~~L~~lgV~~LvLpA~~~a~~~w~~kfGF~~i~ 886 (935)
|...++++||++++.. .+|..|||+++|||||+|+.||+++++.+++.|+++++|.+..++.+||++ +||+.++
T Consensus 10 v~~~~~~iVG~~~l~~-----~~I~~vaV~p~~Rg~GiG~~Ll~~l~~~a~~~g~~~i~L~t~~~~~~fYek-~GF~~~~ 83 (297)
T cd02169 10 IFDDAGELIATGSIAG-----NVLKCVAVCPKYQGEGLALKIVSELINKAYEEGIFHLFLFTKPKNAKFFRG-LGFKELA 83 (297)
T ss_pred EEEECCEEEEEEEecc-----CEEEEEEECHHHcCCCHHHHHHHHHHHHHHHCCCCEEEEEEcccHHHHHHH-CCCEEec
Confidence 3456799999998842 368999999999999999999999999999999999999999999999997 9999998
No 16
>PRK07757 acetyltransferase; Provisional
Probab=98.67 E-value=8.7e-08 Score=93.21 Aligned_cols=81 Identities=21% Similarity=0.325 Sum_probs=71.9
Q ss_pred EEeeCCeEEEEEEEEEeCCeeEEEeeeEeecCccCCChhHHHHHHHHHHhhhcCccEEEecChhhhHHHHHhccCcEEcC
Q 002334 807 ILTVNSSVVSAGILRVFGQEVAELPLVATSKINHGKGYFQLLFACIEKLLSFLRVKSIVLPAAEEAESIWTDKFGFKKID 886 (935)
Q Consensus 807 VL~~~~~vVsaA~lrv~g~~vAElplVAT~~~yRgqG~gr~L~~~IE~~L~~lgV~~LvLpA~~~a~~~w~~kfGF~~i~ 886 (935)
++..++++||.+.+.+.+.+.++|-.|+|+++|||+|+|+.|+..+++.+...|+.++++... +..||.+ +||+.++
T Consensus 45 i~~~~~~lvG~~~l~~~~~~~~~i~~v~V~p~~rg~Glg~~Ll~~l~~~a~~~g~~~i~~~~~--~~~~Y~k-~GF~~~~ 121 (152)
T PRK07757 45 VAEEEGEIVGCCALHILWEDLAEIRSLAVSEDYRGQGIGRMLVEACLEEARELGVKRVFALTY--QPEFFEK-LGFREVD 121 (152)
T ss_pred EEEECCEEEEEEEEEeccCCceEEEEEEECHHHcCCCHHHHHHHHHHHHHHhCCCCeEEEEeC--cHHHHHH-CCCEEcc
Confidence 446789999999999989889999999999999999999999999999999999999876543 4689998 9999998
Q ss_pred HHHH
Q 002334 887 PELL 890 (935)
Q Consensus 887 ~~el 890 (935)
..++
T Consensus 122 ~~~~ 125 (152)
T PRK07757 122 KEAL 125 (152)
T ss_pred cccC
Confidence 8544
No 17
>PRK07922 N-acetylglutamate synthase; Validated
Probab=98.67 E-value=9.1e-08 Score=96.70 Aligned_cols=79 Identities=20% Similarity=0.323 Sum_probs=70.9
Q ss_pred EEEe-eCCeEEEEEEEEEeCCeeEEEeeeEeecCccCCChhHHHHHHHHHHhhhcCccEEEecChhhhHHHHHhccCcEE
Q 002334 806 AILT-VNSSVVSAGILRVFGQEVAELPLVATSKINHGKGYFQLLFACIEKLLSFLRVKSIVLPAAEEAESIWTDKFGFKK 884 (935)
Q Consensus 806 ~VL~-~~~~vVsaA~lrv~g~~vAElplVAT~~~yRgqG~gr~L~~~IE~~L~~lgV~~LvLpA~~~a~~~w~~kfGF~~ 884 (935)
++++ .++++||.+.+.+...+.++|..++|+++|||+|+|+.||+++++.+++.|++++++... +..||++ +||+.
T Consensus 48 ~va~~~~~~iiG~~~~~~~~~~~~~i~~l~V~p~~rgkGiG~~Ll~~~~~~a~~~g~~~l~~~~~--~~~fY~k-~GF~~ 124 (169)
T PRK07922 48 WVAEHLDGEVVGCGALHVMWEDLAEIRTVAVDPAARGRGVGHAIVERLLDVARELGLSRVFVLTF--EVEFFAR-HGFVE 124 (169)
T ss_pred EEEEecCCcEEEEEEEeecCCCceEEEEEEECHHHhCCCHHHHHHHHHHHHHHHcCCCEEEEEec--cHHHHHH-CCCEE
Confidence 3556 889999999998878889999999999999999999999999999999999999987654 4789999 99999
Q ss_pred cCH
Q 002334 885 IDP 887 (935)
Q Consensus 885 i~~ 887 (935)
++.
T Consensus 125 ~~~ 127 (169)
T PRK07922 125 IDG 127 (169)
T ss_pred Ccc
Confidence 875
No 18
>PF13527 Acetyltransf_9: Acetyltransferase (GNAT) domain; PDB: 3SXN_C 2I00_D 1M4D_B 1M44_A 1M4G_B 1M4I_A 2OZG_A 2HV2_F 3N7Z_A 3RYO_B ....
Probab=98.66 E-value=1.7e-07 Score=88.12 Aligned_cols=111 Identities=22% Similarity=0.271 Sum_probs=80.5
Q ss_pred HHHHHHhhhhcCCCcccCCCCCCccccccccccCCCceecceEEEEEeeCCeEEEEEEEEEe-----CC--eeEEEeeeE
Q 002334 762 LSQAVAIFHDCFDPIVDSISGRDLIPSMVYGRNLRGQEFGGMYCAILTVNSSVVSAGILRVF-----GQ--EVAELPLVA 834 (935)
Q Consensus 762 La~AL~If~EcF~Pivd~rSgrDLIp~MVygr~~~~~~f~GfY~~VL~~~~~vVsaA~lrv~-----g~--~vAElplVA 834 (935)
+.+..+++.++|.+-.++. ..+-|..+. +..-++++.+.++++||.+.+... |. .++.|--||
T Consensus 10 ~~~i~~l~~~~F~~~~~~~------~~~~~~~~~----~~~~~~~~~~~~~~ivg~~~~~~~~~~~~g~~~~~~~i~~v~ 79 (127)
T PF13527_consen 10 FEQIIELFNEAFGDSESPP------EIWEYFRNL----YGPGRCVVAEDDGKIVGHVGLIPRRLSVGGKKFKAAYIGDVA 79 (127)
T ss_dssp HHHHHHHHHHHTTT-CHHH------HHHHHHHHH----HHTTEEEEEEETTEEEEEEEEEEEEEEETTEEEEEEEEEEEE
T ss_pred HHHHHHHHHHHCCCCCCch------hhhhhhhcc----cCcCcEEEEEECCEEEEEEEEEEEEEEECCEEEEEEEEEEEE
Confidence 4567778889995543331 222332221 111256777889999998877554 43 589999999
Q ss_pred eecCccCCChhHHHHHHHHHHhhhcCccEEEecChhhhHHHHHhccCcEEc
Q 002334 835 TSKINHGKGYFQLLFACIEKLLSFLRVKSIVLPAAEEAESIWTDKFGFKKI 885 (935)
Q Consensus 835 T~~~yRgqG~gr~L~~~IE~~L~~lgV~~LvLpA~~~a~~~w~~kfGF~~i 885 (935)
|+|+|||||+|+.||.++++.++..|+..+++.+ ...+||.+ |||+.+
T Consensus 80 v~p~~R~~Gl~~~L~~~~~~~~~~~g~~~~~l~~--~~~~~Y~~-~G~~~~ 127 (127)
T PF13527_consen 80 VDPEYRGRGLGRQLMRALLERARERGVPFIFLFP--SSPPFYRR-FGFEYA 127 (127)
T ss_dssp E-GGGTTSSHHHHHHHHHHHHHHHTT-SEEEEE---SSHHHHHH-TTEEEE
T ss_pred ECHHHcCCCHHHHHHHHHHHHHHhCCCCEEEEec--CChhhhhc-CCCEEC
Confidence 9999999999999999999999999999999887 34789988 999864
No 19
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=98.64 E-value=8.1e-09 Score=121.44 Aligned_cols=55 Identities=38% Similarity=0.905 Sum_probs=47.2
Q ss_pred cccCCcceeccCCCCCCCCCCCCceeeCCCCCCc-CCCCCCCCCcCCccCCCCCCCceecCCccchh
Q 002334 641 EAELSGCLLCRGCDFSKSGFGPRTILLCDQCERE-FHVGCLKKHKMADLRELPKGKWFCCMDCSRIN 706 (935)
Q Consensus 641 e~e~~~C~iC~~~df~~sgf~~~tLL~CDqCdr~-YHv~CL~p~~~~~L~evP~g~WfCc~~C~~i~ 706 (935)
..+...|.+|..+| .++.||+||.|... ||++||+| +|.++|-+.||| .+|..+.
T Consensus 212 ~~E~~~C~IC~~~D------pEdVLLLCDsCN~~~YH~YCLDP----dl~eiP~~eWYC-~NC~dL~ 267 (1134)
T KOG0825|consen 212 SQEEVKCDICTVHD------PEDVLLLCDSCNKVYYHVYCLDP----DLSESPVNEWYC-TNCSLLE 267 (1134)
T ss_pred ccccccceeeccCC------hHHhheeecccccceeeccccCc----ccccccccceec-Ccchhhh
Confidence 34456799999886 56789999999998 99999998 899999999999 8997543
No 20
>PRK03624 putative acetyltransferase; Provisional
Probab=98.63 E-value=1.1e-07 Score=89.18 Aligned_cols=83 Identities=19% Similarity=0.155 Sum_probs=69.1
Q ss_pred EEEEEeeCCeEEEEEEEEEeCCeeEEEeeeEeecCccCCChhHHHHHHHHHHhhhcCccEEEecCh---hhhHHHHHhcc
Q 002334 804 YCAILTVNSSVVSAGILRVFGQEVAELPLVATSKINHGKGYFQLLFACIEKLLSFLRVKSIVLPAA---EEAESIWTDKF 880 (935)
Q Consensus 804 Y~~VL~~~~~vVsaA~lrv~g~~vAElplVAT~~~yRgqG~gr~L~~~IE~~L~~lgV~~LvLpA~---~~a~~~w~~kf 880 (935)
+.+++..++++||.+.+...+ ..+.+..++|+++|||||+|+.|+..+++.++.+|++++.+.+. ..+..+|.+ +
T Consensus 46 ~~~v~~~~~~~vG~~~~~~~~-~~~~i~~i~v~p~~rg~Gig~~ll~~~~~~~~~~~~~~~~~~~~~~N~~~~~~y~k-~ 123 (140)
T PRK03624 46 LFLVAEVGGEVVGTVMGGYDG-HRGWAYYLAVHPDFRGRGIGRALVARLEKKLIARGCPKINLQVREDNDAVLGFYEA-L 123 (140)
T ss_pred eEEEEEcCCcEEEEEEeeccC-CCceEEEEEECHHHhCCCHHHHHHHHHHHHHHHCCCCEEEEEEecCcHHHHHHHHH-c
Confidence 445667889999999876544 45678889999999999999999999999999999999887654 357889988 9
Q ss_pred CcEEcCHH
Q 002334 881 GFKKIDPE 888 (935)
Q Consensus 881 GF~~i~~~ 888 (935)
||+..+..
T Consensus 124 GF~~~~~~ 131 (140)
T PRK03624 124 GYEEQDRI 131 (140)
T ss_pred CCccccEE
Confidence 99976543
No 21
>TIGR01890 N-Ac-Glu-synth amino-acid N-acetyltransferase. This model represents a clade of amino-acid N-acetyltransferases acting mainly on glutamate in the first step of the "acetylated" ornithine biosynthesis pathway. For this reason it is also called N-acetylglutamate synthase. The enzyme may also act on aspartate.
Probab=98.58 E-value=2.3e-07 Score=106.78 Aligned_cols=86 Identities=16% Similarity=0.264 Sum_probs=74.4
Q ss_pred EEeeCCeEEEEEEEEEeC-CeeEEEeeeEeecCccCCChhHHHHHHHHHHhhhcCccEEEecChhhhHHHHHhccCcEEc
Q 002334 807 ILTVNSSVVSAGILRVFG-QEVAELPLVATSKINHGKGYFQLLFACIEKLLSFLRVKSIVLPAAEEAESIWTDKFGFKKI 885 (935)
Q Consensus 807 VL~~~~~vVsaA~lrv~g-~~vAElplVAT~~~yRgqG~gr~L~~~IE~~L~~lgV~~LvLpA~~~a~~~w~~kfGF~~i 885 (935)
|++.++++||++.+..+. .+.++|-.++|+++|||||+|++||+.+++.+++.|.+++++.+. .+..||.+ +||+.+
T Consensus 326 V~~~dg~iVG~~~~~~~~~~~~~~I~~l~V~p~~Rg~GiG~~Ll~~l~~~A~~~G~~~l~v~~~-~a~~fY~k-~GF~~~ 403 (429)
T TIGR01890 326 IIEHDGNIIGCAALYPYAEEDCGEMACLAVSPEYQDGGRGERLLAHIEDRARQMGISRLFVLTT-RTGHWFRE-RGFQTA 403 (429)
T ss_pred EEEECCEEEEEEEEEecCCCCeEEEEEEEECHHHcCCCHHHHHHHHHHHHHHHcCCCEEEEeec-chHHHHHH-CCCEEC
Confidence 457899999999998874 468999999999999999999999999999999999999887654 56789987 999999
Q ss_pred CHHHHHHHH
Q 002334 886 DPELLSIYR 894 (935)
Q Consensus 886 ~~~el~~~~ 894 (935)
+..++..-+
T Consensus 404 g~~~l~~~~ 412 (429)
T TIGR01890 404 SVDELPEAR 412 (429)
T ss_pred ChhhCCHHH
Confidence 986554433
No 22
>TIGR01575 rimI ribosomal-protein-alanine acetyltransferase. Members of this model belong to the GCN5-related N-acetyltransferase (GNAT) superfamily. This model covers prokarotes and the archaea. The seed contains a characterized accession for Gram negative E. coli. An untraceable characterized accession (PIR|S66013) for Gram positive B. subtilis scores well (205.0) in the full alignment. Characterized members are lacking in the archaea. Noise cutoff (72.4) was set to exclude M. loti paralog of rimI. Trusted cutoff (80.0) was set at next highest scoring member in the mini-database.
Probab=98.53 E-value=4.8e-07 Score=84.14 Aligned_cols=80 Identities=18% Similarity=0.218 Sum_probs=68.5
Q ss_pred EEEeeCCeEEEEEEEEEeCCeeEEEeeeEeecCccCCChhHHHHHHHHHHhhhcCccEEEec---ChhhhHHHHHhccCc
Q 002334 806 AILTVNSSVVSAGILRVFGQEVAELPLVATSKINHGKGYFQLLFACIEKLLSFLRVKSIVLP---AAEEAESIWTDKFGF 882 (935)
Q Consensus 806 ~VL~~~~~vVsaA~lrv~g~~vAElplVAT~~~yRgqG~gr~L~~~IE~~L~~lgV~~LvLp---A~~~a~~~w~~kfGF 882 (935)
++++.++++||.+.++... ....+-.++|+++|||||+|+.|+.++++.+...|..++++. ....+..||++ +||
T Consensus 34 ~~~~~~~~~vg~~~~~~~~-~~~~i~~~~v~~~~rg~G~g~~ll~~~~~~~~~~~~~~i~~~~~~~n~~~~~~y~~-~Gf 111 (131)
T TIGR01575 34 LLARIGGKVVGYAGVQIVL-DEAHILNIAVKPEYQGQGIGRALLRELIDEAKGRGVNEIFLEVRVSNIAAQALYKK-LGF 111 (131)
T ss_pred EEEecCCeEEEEEEEEecC-CCeEEEEEEECHHHcCCCHHHHHHHHHHHHHHHcCCCeEEEEEecccHHHHHHHHH-cCC
Confidence 3446789999999987644 457888899999999999999999999999999999999984 45567899999 999
Q ss_pred EEcCH
Q 002334 883 KKIDP 887 (935)
Q Consensus 883 ~~i~~ 887 (935)
+.++.
T Consensus 112 ~~~~~ 116 (131)
T TIGR01575 112 NEIAI 116 (131)
T ss_pred Ccccc
Confidence 98865
No 23
>TIGR00124 cit_ly_ligase [citrate (pro-3S)-lyase] ligase. ATP is cleaved to AMP and pyrophosphate during the reaction. The carboxyl end is homologous to a number of cytidyltransferases that also release pyrophosphate.
Probab=98.53 E-value=2.9e-07 Score=103.09 Aligned_cols=80 Identities=18% Similarity=0.225 Sum_probs=72.4
Q ss_pred eEEEEEeeCCeEEEEEEEEEeCCeeEEEeeeEeecCccCCChhHHHHHHHHHHhhhcCccEEEecChhhhHHHHHhccCc
Q 002334 803 MYCAILTVNSSVVSAGILRVFGQEVAELPLVATSKINHGKGYFQLLFACIEKLLSFLRVKSIVLPAAEEAESIWTDKFGF 882 (935)
Q Consensus 803 fY~~VL~~~~~vVsaA~lrv~g~~vAElplVAT~~~yRgqG~gr~L~~~IE~~L~~lgV~~LvLpA~~~a~~~w~~kfGF 882 (935)
-|+++++.+|++||+|++ .|. .|..|||+++|||+|+|+.||.++++.+.+.|+..++|.+.+....||++ +||
T Consensus 31 d~~vv~~~~~~lVg~g~l--~g~---~ik~vaV~~~~rG~Glg~~L~~~L~~~a~~~G~~~l~l~Tk~~~~~fy~k-lGF 104 (332)
T TIGR00124 31 EIFIAVYEDEEIIGCGGI--AGN---VIKCVAIDESLRGEGLALQLMTELENLAYELGRFHLFIFTKPEYAALFEY-CGF 104 (332)
T ss_pred CEEEEEEECCEEEEEEEE--ecC---EEEEEEEcHHHcCCCHHHHHHHHHHHHHHHcCCCEEEEEECchHHHHHHH-cCC
Confidence 567778899999999997 342 48899999999999999999999999999999999999999999999988 999
Q ss_pred EEcCHH
Q 002334 883 KKIDPE 888 (935)
Q Consensus 883 ~~i~~~ 888 (935)
..+...
T Consensus 105 ~~i~~~ 110 (332)
T TIGR00124 105 KTLAEA 110 (332)
T ss_pred EEeeee
Confidence 998863
No 24
>PRK10975 TDP-fucosamine acetyltransferase; Provisional
Probab=98.52 E-value=4.3e-07 Score=92.87 Aligned_cols=84 Identities=12% Similarity=0.062 Sum_probs=71.3
Q ss_pred eEEEEEeeCCeEEEEEEEEEeCCeeEEEeeeEeecCccCCChhHHHHHHHHHHhhhcCccEEEecCh---hhhHHHHHhc
Q 002334 803 MYCAILTVNSSVVSAGILRVFGQEVAELPLVATSKINHGKGYFQLLFACIEKLLSFLRVKSIVLPAA---EEAESIWTDK 879 (935)
Q Consensus 803 fY~~VL~~~~~vVsaA~lrv~g~~vAElplVAT~~~yRgqG~gr~L~~~IE~~L~~lgV~~LvLpA~---~~a~~~w~~k 879 (935)
++.++...++++||.+.+...+...++|-.++|.++|||||+|+.|+..+++.+...|+.++++... ..+..||++
T Consensus 102 ~~~v~~~~~g~~vG~~~l~~~~~~~~~i~~~~V~p~~rg~Gig~~Ll~~~~~~a~~~g~~~i~l~v~~~N~~a~~~yek- 180 (194)
T PRK10975 102 QCLLLRDASGQIQGFVTLRELNDTDARIGLLAVFPGAQGRGIGARLMQAALNWCQARGLTRLRVATQMGNLAALRLYIR- 180 (194)
T ss_pred cEEEEEcCCCCEEEEEEEEecCCCceEEEEEEEChhhcCCCHHHHHHHHHHHHHHHcCCCEEEEEeCCCcHHHHHHHHH-
Confidence 4434445678999999998777677999999999999999999999999999999999999987644 457899988
Q ss_pred cCcEEcCH
Q 002334 880 FGFKKIDP 887 (935)
Q Consensus 880 fGF~~i~~ 887 (935)
+||+..+.
T Consensus 181 ~Gf~~~~~ 188 (194)
T PRK10975 181 SGANIEST 188 (194)
T ss_pred CCCeEeEE
Confidence 99997653
No 25
>TIGR02382 wecD_rffC TDP-D-fucosamine acetyltransferase. This model represents the WecD protein (Formerly RffC) for the biosynthesis of enterobacterial common antigen (ECA), an outer leaflet, outer membrane glycolipid with a trisaccharide repeat unit. WecD is a member of the GNAT family of acetytransferases (pfam00583).
Probab=98.51 E-value=4.6e-07 Score=92.70 Aligned_cols=80 Identities=11% Similarity=0.031 Sum_probs=69.9
Q ss_pred EEeeCCeEEEEEEEEEeCCeeEEEeeeEeecCccCCChhHHHHHHHHHHhhhcCccEEEecC---hhhhHHHHHhccCcE
Q 002334 807 ILTVNSSVVSAGILRVFGQEVAELPLVATSKINHGKGYFQLLFACIEKLLSFLRVKSIVLPA---AEEAESIWTDKFGFK 883 (935)
Q Consensus 807 VL~~~~~vVsaA~lrv~g~~vAElplVAT~~~yRgqG~gr~L~~~IE~~L~~lgV~~LvLpA---~~~a~~~w~~kfGF~ 883 (935)
+...+|++||.+.++......++|-.+++.++|||||+|+.|+.++++.+..+|+.+|.+.. -..|..||.+ +||+
T Consensus 103 ~~~~~g~iiG~i~l~~~~~~~~~i~~l~V~p~~rGkG~G~~ll~~~~~~a~~~g~~~I~l~v~~~N~~A~~~Y~k-lGF~ 181 (191)
T TIGR02382 103 LRDASGDPRGYVTLRELNDTDARIGLLAVFPGAQSRGIGAELMQTALNWCYARGLTRLRVATQMGNTAALRLYIR-SGAN 181 (191)
T ss_pred EEccCCeEEEEEEEEecCCCceEEEEEEECHHHcCCCHHHHHHHHHHHHHHHcCCCEEEEEeCCCCHHHHHHHHH-cCCc
Confidence 44568999999999877666789999999999999999999999999999999999999874 3458999998 9998
Q ss_pred EcCH
Q 002334 884 KIDP 887 (935)
Q Consensus 884 ~i~~ 887 (935)
..+.
T Consensus 182 ~~~~ 185 (191)
T TIGR02382 182 IEST 185 (191)
T ss_pred cccc
Confidence 7654
No 26
>COG2153 ElaA Predicted acyltransferase [General function prediction only]
Probab=98.48 E-value=4.1e-07 Score=90.24 Aligned_cols=87 Identities=23% Similarity=0.206 Sum_probs=73.9
Q ss_pred eEEEEEeeCCeEEEEEEEEEeCCeeEE--EeeeEeecCccCCChhHHHHHHHHHHhhhcC-ccEEEecChhhhHHHHHhc
Q 002334 803 MYCAILTVNSSVVSAGILRVFGQEVAE--LPLVATSKINHGKGYFQLLFACIEKLLSFLR-VKSIVLPAAEEAESIWTDK 879 (935)
Q Consensus 803 fY~~VL~~~~~vVsaA~lrv~g~~vAE--lplVAT~~~yRgqG~gr~L~~~IE~~L~~lg-V~~LvLpA~~~a~~~w~~k 879 (935)
+.-++...||++|++|+|-.-+.+..+ |.+|+|.+++||+|+|+.||....+.+.... =+-+.|.|+..++.||..
T Consensus 50 ~Hl~~~~~~g~LvAyaRLl~~~~~~~~~~iGRV~v~~~~RG~glG~~Lm~~AL~~~~~~~p~~~v~l~AQahLq~fYa~- 128 (155)
T COG2153 50 RHLLGWTPDGELVAYARLLPPGAEYEEVSIGRVIVSPAARGQGLGQQLMEKALETAGREWPDKPVYLGAQAHLQDFYAS- 128 (155)
T ss_pred ceEEEEcCCCeEEEEEecCCCCCCcCceeeeeEEECHhhhccchhHHHHHHHHHHHHhhCCCCCeEEehHHHHHHHHHH-
Confidence 334443459999999999888876666 9999999999999999999998888777666 567999999999999999
Q ss_pred cCcEEcCHHHH
Q 002334 880 FGFKKIDPELL 890 (935)
Q Consensus 880 fGF~~i~~~el 890 (935)
|||.+.+++-+
T Consensus 129 ~GFv~~~e~yl 139 (155)
T COG2153 129 FGFVRVGEEYL 139 (155)
T ss_pred hCcEEcCchhh
Confidence 99999998643
No 27
>PRK05279 N-acetylglutamate synthase; Validated
Probab=98.48 E-value=4.8e-07 Score=104.43 Aligned_cols=86 Identities=17% Similarity=0.256 Sum_probs=73.9
Q ss_pred EEEeeCCeEEEEEEEEEeC-CeeEEEeeeEeecCccCCChhHHHHHHHHHHhhhcCccEEEecChhhhHHHHHhccCcEE
Q 002334 806 AILTVNSSVVSAGILRVFG-QEVAELPLVATSKINHGKGYFQLLFACIEKLLSFLRVKSIVLPAAEEAESIWTDKFGFKK 884 (935)
Q Consensus 806 ~VL~~~~~vVsaA~lrv~g-~~vAElplVAT~~~yRgqG~gr~L~~~IE~~L~~lgV~~LvLpA~~~a~~~w~~kfGF~~ 884 (935)
++++.++++||++.+..+. ...++|-.++|+++|||||+|++||+++++.+++.|+.++++.+ ..|..||.+ +||+.
T Consensus 337 ~va~~dg~iVG~~~~~~~~~~~~~~I~~l~V~p~~Rg~GiG~~Ll~~l~~~a~~~g~~~l~l~~-~~a~~fY~k-~GF~~ 414 (441)
T PRK05279 337 TVIERDGLIIGCAALYPFPEEKMGEMACLAVHPDYRGSGRGERLLKRIEQRARQLGLKRLFVLT-TRTAHWFLE-RGFVP 414 (441)
T ss_pred EEEEECCEEEEEEEEEEcCCCCeEEEEEEEECHHHcCCCHHHHHHHHHHHHHHHcCCCEEEEec-chHHHHHHH-CcCEE
Confidence 3557899999999887654 36899999999999999999999999999999999999998765 468899988 99999
Q ss_pred cCHHHHHHH
Q 002334 885 IDPELLSIY 893 (935)
Q Consensus 885 i~~~el~~~ 893 (935)
++.+++..-
T Consensus 415 ~g~~~~~~~ 423 (441)
T PRK05279 415 VDVDDLPEA 423 (441)
T ss_pred CChhhCcHH
Confidence 998655443
No 28
>TIGR03827 GNAT_ablB putative beta-lysine N-acetyltransferase. Members of this protein family are GNAT family acetyltransferases, based on a seed alignment in which every member is associated with a lysine 2,3-aminomutase family protein, usually as the adjacent gene. This family includes AblB, the enzyme beta-lysine acetyltransferase that completes the two-step synthesis of the osmolyte (compatible solute) N-epsilon-acetyl-beta-lysine; all members of the family may have this function. Note that N-epsilon-acetyl-beta-lysine has been observed only in methanogenic archaea (e.g. Methanosarcina) but that this model, paired with TIGR03820, suggests a much broader distribution.
Probab=98.48 E-value=5.6e-07 Score=97.18 Aligned_cols=85 Identities=15% Similarity=0.146 Sum_probs=71.2
Q ss_pred ceEEEEEeeCCeEEEEEEEEEe-CCeeEEEeeeEeecCccCCChhHHHHHHHHHHhhhcCccEEEecChhh---hHHHHH
Q 002334 802 GMYCAILTVNSSVVSAGILRVF-GQEVAELPLVATSKINHGKGYFQLLFACIEKLLSFLRVKSIVLPAAEE---AESIWT 877 (935)
Q Consensus 802 GfY~~VL~~~~~vVsaA~lrv~-g~~vAElplVAT~~~yRgqG~gr~L~~~IE~~L~~lgV~~LvLpA~~~---a~~~w~ 877 (935)
+.+.++++.++++||.+++.+. +...+||--++|+|+|||||+|+.||..+++.++..|++++++.+... +..+|.
T Consensus 157 ~~~~~v~~~~g~iVG~~~~~~~~~~~~~eI~~i~V~P~yRG~GiG~~Ll~~l~~~a~~~g~~~l~~~~~~~n~~a~~ly~ 236 (266)
T TIGR03827 157 NVVYFGVEDGGKIIALASAEMDPENGNAEMTDFATLPEYRGKGLAKILLAAMEKEMKEKGIRTAYTIARASSYGMNITFA 236 (266)
T ss_pred CcEEEEEEECCEEEEEEEEecCCCCCcEEEEEEEECHHHcCCCHHHHHHHHHHHHHHHCCCcEEEeehhhcchhHHHHHH
Confidence 3444566789999999998543 346799999999999999999999999999999999999999987665 356887
Q ss_pred hccCcEEcCH
Q 002334 878 DKFGFKKIDP 887 (935)
Q Consensus 878 ~kfGF~~i~~ 887 (935)
+ +||+..+.
T Consensus 237 k-~GF~~~G~ 245 (266)
T TIGR03827 237 R-LGYAYGGT 245 (266)
T ss_pred H-cCCccccE
Confidence 7 99997665
No 29
>COG5141 PHD zinc finger-containing protein [General function prediction only]
Probab=98.47 E-value=4.4e-08 Score=110.97 Aligned_cols=125 Identities=27% Similarity=0.630 Sum_probs=76.4
Q ss_pred CcccccccCccCCcCcccccCCCCceecccCCCcccccccCCCCCCCCCCccccccccc--------ccc--cccccc--
Q 002334 543 LGIICHCCNSEVSPSQFEAHADGGNLLPCDGCPRAFHKECASLSSIPQGDWYCKYCQNM--------FER--KRFLQH-- 610 (935)
Q Consensus 543 ~~i~C~~C~~eiSpS~FE~hadgG~Ll~CD~Cp~afH~~CL~L~~vPeg~W~Cp~C~~~--------~~~--ek~la~-- 610 (935)
-+..|.+|.+.-+. ..+-+++||+|..+.|+.|+++.-+|+|.|+|..|... |+. .+++..
T Consensus 192 ~d~~C~~c~~t~~e-------N~naiVfCdgC~i~VHq~CYGI~f~peG~WlCrkCi~~~~~i~~C~fCps~dGaFkqT~ 264 (669)
T COG5141 192 FDDICTKCTSTHNE-------NSNAIVFCDGCEICVHQSCYGIQFLPEGFWLCRKCIYGEYQIRCCSFCPSSDGAFKQTS 264 (669)
T ss_pred hhhhhHhccccccC-------CcceEEEecCcchhhhhhcccceecCcchhhhhhhcccccceeEEEeccCCCCceeecc
Confidence 45678888853221 45789999999999999999999999999999999632 111 111110
Q ss_pred ------ccccccc-----cccccccchhhhhhhhhhhhccccccCCcceeccCCCCCCCCCCCCceeeCC--CCCCcCCC
Q 002334 611 ------DANAVEA-----GRVSGVDSVEQITKRCIRIVKNLEAELSGCLLCRGCDFSKSGFGPRTILLCD--QCEREFHV 677 (935)
Q Consensus 611 ------n~naia~-----gr~~Gvd~ieqi~~R~iR~vkd~e~e~~~C~iC~~~df~~sgf~~~tLL~CD--qCdr~YHv 677 (935)
+..++.. +.....++++.+. .+.. .....+|.+|+.. .++.++|. .|-++||+
T Consensus 265 dgrW~H~iCA~~~pelsF~~l~~~dpI~~i~-----sVs~-srwkl~C~iCk~~--------~GtcIqCs~~nC~~aYHV 330 (669)
T COG5141 265 DGRWGHVICAMFNPELSFGHLLSKDPIDNIA-----SVSS-SRWKLGCLICKEF--------GGTCIQCSYFNCTRAYHV 330 (669)
T ss_pred CCchHhHhHHHhcchhccccccccchhhhhc-----ccch-hhHhheeeEEccc--------Ccceeeecccchhhhhhh
Confidence 0001100 0001111111110 0000 1122469999974 57899998 69999999
Q ss_pred CCCCCCcCCcc
Q 002334 678 GCLKKHKMADL 688 (935)
Q Consensus 678 ~CL~p~~~~~L 688 (935)
+|....+.-++
T Consensus 331 tCArrag~f~~ 341 (669)
T COG5141 331 TCARRAGYFDL 341 (669)
T ss_pred hhhhhcchhhh
Confidence 99988664444
No 30
>PRK09491 rimI ribosomal-protein-alanine N-acetyltransferase; Provisional
Probab=98.46 E-value=1.2e-06 Score=84.98 Aligned_cols=85 Identities=20% Similarity=0.190 Sum_probs=71.3
Q ss_pred cceEEEEEeeCCeEEEEEEEEEeCCeeEEEeeeEeecCccCCChhHHHHHHHHHHhhhcCccEEEecC---hhhhHHHHH
Q 002334 801 GGMYCAILTVNSSVVSAGILRVFGQEVAELPLVATSKINHGKGYFQLLFACIEKLLSFLRVKSIVLPA---AEEAESIWT 877 (935)
Q Consensus 801 ~GfY~~VL~~~~~vVsaA~lrv~g~~vAElplVAT~~~yRgqG~gr~L~~~IE~~L~~lgV~~LvLpA---~~~a~~~w~ 877 (935)
.+++.+++..++++||.+.++.... .+++-.++|.++|||||+|+.|+..+++.+...|+..+++.+ -..+..+|+
T Consensus 38 ~~~~~~~~~~~~~~vG~~~~~~~~~-~~~~~~i~v~~~~rg~G~g~~ll~~~~~~~~~~~~~~~~~~~~~~N~~a~~~y~ 116 (146)
T PRK09491 38 ERYLNLKLTVNGQMAAFAITQVVLD-EATLFNIAVDPDYQRQGLGRALLEHLIDELEKRGVATLWLEVRASNAAAIALYE 116 (146)
T ss_pred cCceEEEEEECCeEEEEEEEEeecC-ceEEEEEEECHHHccCCHHHHHHHHHHHHHHHCCCcEEEEEEccCCHHHHHHHH
Confidence 3455556678899999999876654 466788999999999999999999999999999999988753 456889999
Q ss_pred hccCcEEcCH
Q 002334 878 DKFGFKKIDP 887 (935)
Q Consensus 878 ~kfGF~~i~~ 887 (935)
+ +||+..+.
T Consensus 117 k-~Gf~~~~~ 125 (146)
T PRK09491 117 S-LGFNEVTI 125 (146)
T ss_pred H-cCCEEeee
Confidence 9 99998775
No 31
>KOG4299 consensus PHD Zn-finger protein [General function prediction only]
Probab=98.46 E-value=6.9e-08 Score=112.85 Aligned_cols=59 Identities=32% Similarity=0.841 Sum_probs=44.5
Q ss_pred eeccccccCCc--ccccccCccCCcCcccccCCCCceecccCCCcccccccCC----CCCCCCCCccccccccc
Q 002334 534 KLLEGYKNGLG--IICHCCNSEVSPSQFEAHADGGNLLPCDGCPRAFHKECAS----LSSIPQGDWYCKYCQNM 601 (935)
Q Consensus 534 ~l~~G~~~~~~--i~C~~C~~eiSpS~FE~hadgG~Ll~CD~Cp~afH~~CL~----L~~vPeg~W~Cp~C~~~ 601 (935)
...++++.-.. ++|..|+..- .| .+++|||+||++||+.||+ .+.+|.|.|+|+.|...
T Consensus 241 ~~~D~~~~~~~~~~fCsaCn~~~---~F------~~~i~CD~Cp~sFH~~CLePPl~~eniP~g~W~C~ec~~k 305 (613)
T KOG4299|consen 241 RERDKNISVEDIEDFCSACNGSG---LF------NDIICCDGCPRSFHQTCLEPPLEPENIPPGSWFCPECKIK 305 (613)
T ss_pred hhhccccccCCHHHHHHHhCCcc---cc------ccceeecCCchHHHHhhcCCCCCcccCCCCccccCCCeee
Confidence 34455554444 4999999521 11 4569999999999999997 45799999999999765
No 32
>KOG0954 consensus PHD finger protein [General function prediction only]
Probab=98.46 E-value=9.4e-08 Score=112.58 Aligned_cols=154 Identities=23% Similarity=0.474 Sum_probs=94.3
Q ss_pred ccccCCcccccccCccCCcCcccccCCCCceecccCCCcccccccCCCCCCCCCCccccccccccccccccccccccccc
Q 002334 538 GYKNGLGIICHCCNSEVSPSQFEAHADGGNLLPCDGCPRAFHKECASLSSIPQGDWYCKYCQNMFERKRFLQHDANAVEA 617 (935)
Q Consensus 538 G~~~~~~i~C~~C~~eiSpS~FE~hadgG~Ll~CD~Cp~afH~~CL~L~~vPeg~W~Cp~C~~~~~~ek~la~n~naia~ 617 (935)
|+...+..+|.+|...-+. ++.+|++||.|....|+.|+++.++|+|.|.|..|...+++.-.+.++....-.
T Consensus 265 gie~dedviCDvCrspD~e-------~~neMVfCd~Cn~cVHqaCyGIle~p~gpWlCr~Calg~~ppCvLCPkkGGamK 337 (893)
T KOG0954|consen 265 GIEYDEDVICDVCRSPDSE-------EANEMVFCDKCNICVHQACYGILEVPEGPWLCRTCALGIEPPCVLCPKKGGAMK 337 (893)
T ss_pred eeeccccceeceecCCCcc-------ccceeEEeccchhHHHHhhhceeecCCCCeeehhccccCCCCeeeccccCCccc
Confidence 3445578899999964332 678999999999999999999999999999999998665543333333221110
Q ss_pred ccccccc--------chhhhhhhhhhhhcc------c--cccCCcceeccCCCCCCCCCCCCceeeCC--CCCCcCCCCC
Q 002334 618 GRVSGVD--------SVEQITKRCIRIVKN------L--EAELSGCLLCRGCDFSKSGFGPRTILLCD--QCEREFHVGC 679 (935)
Q Consensus 618 gr~~Gvd--------~ieqi~~R~iR~vkd------~--e~e~~~C~iC~~~df~~sgf~~~tLL~CD--qCdr~YHv~C 679 (935)
....|.. |++++...+....+. + ......|.+|+.. -+..|+|. .|...||+.|
T Consensus 338 ~~~sgT~wAHvsCALwIPEVsie~~ekmePItkfs~IpesRwslvC~LCk~k--------~GACIqCs~k~C~t~fHv~C 409 (893)
T KOG0954|consen 338 PTKSGTKWAHVSCALWIPEVSIECPEKMEPITKFSHIPESRWSLVCNLCKVK--------SGACIQCSNKTCRTAFHVTC 409 (893)
T ss_pred ccCCCCeeeEeeeeeccceeeccCHhhcCcccccCCCcHHHHHHHHHHhccc--------CcceEEecccchhhhccchh
Confidence 0011111 222222111111000 0 1112349999863 35788887 8999999999
Q ss_pred CCCCcCCcc---CCC--CCCCceecCCccchhH
Q 002334 680 LKKHKMADL---REL--PKGKWFCCMDCSRINS 707 (935)
Q Consensus 680 L~p~~~~~L---~ev--P~g~WfCc~~C~~i~~ 707 (935)
...+|+..- .+. -...-|| ..|..+.+
T Consensus 410 A~~aG~~~~~~~~~~D~v~~~s~c-~khs~~~~ 441 (893)
T KOG0954|consen 410 AFEAGLEMKTILKENDEVKFKSYC-SKHSDHRE 441 (893)
T ss_pred hhhcCCeeeeeeccCCchhheeec-cccccccc
Confidence 999875311 111 1245688 66766654
No 33
>PRK12308 bifunctional argininosuccinate lyase/N-acetylglutamate synthase; Provisional
Probab=98.45 E-value=5.2e-07 Score=108.48 Aligned_cols=82 Identities=15% Similarity=0.203 Sum_probs=73.5
Q ss_pred EEEeeCCeEEEEEEEEEeCCeeEEEeeeEeecCccCCChhHHHHHHHHHHhhhcCccEEEecChhhhHHHHHhccCcEEc
Q 002334 806 AILTVNSSVVSAGILRVFGQEVAELPLVATSKINHGKGYFQLLFACIEKLLSFLRVKSIVLPAAEEAESIWTDKFGFKKI 885 (935)
Q Consensus 806 ~VL~~~~~vVsaA~lrv~g~~vAElplVAT~~~yRgqG~gr~L~~~IE~~L~~lgV~~LvLpA~~~a~~~w~~kfGF~~i 885 (935)
+|++.+|++||.+.+.....+.++|-.++|+|+|||||+|+.||+.+++.++..|++.|++.+. +..||++ +||+..
T Consensus 506 ~Va~~~g~IVG~~~l~~~~~~~~~I~~i~V~P~~rGkGIGk~Ll~~l~~~ak~~g~~~i~l~~~--a~~FYek-~GF~~~ 582 (614)
T PRK12308 506 AVAEHHGEVTGCASLYIYDSGLAEIRSLGVEAGWQVQGQGSALVQYLVEKARQMAIKKVFVLTR--VPEFFMK-QGFSPT 582 (614)
T ss_pred EEEEECCEEEEEEEEEEcCCCeEEEEEEEECHHHcCCCHHHHHHHHHHHHHHHCCCCEEEEeeC--cHHHHHH-CCCEEC
Confidence 4567899999999998877778999999999999999999999999999999999999988653 5789998 999999
Q ss_pred CHHHH
Q 002334 886 DPELL 890 (935)
Q Consensus 886 ~~~el 890 (935)
+...+
T Consensus 583 ~~~~~ 587 (614)
T PRK12308 583 SKSLL 587 (614)
T ss_pred CcccC
Confidence 98654
No 34
>KOG0955 consensus PHD finger protein BR140/LIN-49 [General function prediction only]
Probab=98.38 E-value=2.1e-07 Score=115.53 Aligned_cols=127 Identities=22% Similarity=0.543 Sum_probs=79.7
Q ss_pred CCcccccccCccCCcCcccccCCCCceecccCCCcccccccCCCCCCCCCCccccccccccccccccccccccccccccc
Q 002334 542 GLGIICHCCNSEVSPSQFEAHADGGNLLPCDGCPRAFHKECASLSSIPQGDWYCKYCQNMFERKRFLQHDANAVEAGRVS 621 (935)
Q Consensus 542 ~~~i~C~~C~~eiSpS~FE~hadgG~Ll~CD~Cp~afH~~CL~L~~vPeg~W~Cp~C~~~~~~ek~la~n~naia~gr~~ 621 (935)
..+.+|.+|..-..- .-..+++||+|..++|+.|+++.-+|+|.|.|..|....++. +.....-...|++.
T Consensus 217 ~~D~~C~iC~~~~~~-------n~n~ivfCD~Cnl~VHq~Cygi~~ipeg~WlCr~Cl~s~~~~--v~c~~cp~~~gAFk 287 (1051)
T KOG0955|consen 217 EEDAVCCICLDGECQ-------NSNVIVFCDGCNLAVHQECYGIPFIPEGQWLCRRCLQSPQRP--VRCLLCPSKGGAFK 287 (1051)
T ss_pred CCCccceeecccccC-------CCceEEEcCCCcchhhhhccCCCCCCCCcEeehhhccCcCcc--cceEeccCCCCcce
Confidence 567899999852110 346899999999999999999999999999999997653322 11111111222222
Q ss_pred ccc-----------chhhhh---------hhhhhhhccccccCCcceeccCCCCCCCCCCCCceeeCC--CCCCcCCCCC
Q 002334 622 GVD-----------SVEQIT---------KRCIRIVKNLEAELSGCLLCRGCDFSKSGFGPRTILLCD--QCEREFHVGC 679 (935)
Q Consensus 622 Gvd-----------~ieqi~---------~R~iR~vkd~e~e~~~C~iC~~~df~~sgf~~~tLL~CD--qCdr~YHv~C 679 (935)
..+ +++++- ...++.+.... ..-.|++|+..+ .+..++|. .|-.+||++|
T Consensus 288 qt~dgrw~Hv~caiwipev~F~nt~~~E~I~~i~~i~~aR-wkL~cy~cK~~~-------~gaciqcs~~~c~~a~hvtc 359 (1051)
T KOG0955|consen 288 QTDDGRWAHVVCAIWIPEVSFANTVFLEPIDSIENIPPAR-WKLTCYICKQKG-------LGACIQCSKANCYTAFHVTC 359 (1051)
T ss_pred eccCCceeeeehhhcccccccccchhhccccchhcCcHhh-hhceeeeeccCC-------CCcceecchhhhhhhhhhhh
Confidence 221 111110 01111111111 234699999752 57888897 6899999999
Q ss_pred CCCCcC
Q 002334 680 LKKHKM 685 (935)
Q Consensus 680 L~p~~~ 685 (935)
....|+
T Consensus 360 a~~agl 365 (1051)
T KOG0955|consen 360 ARRAGL 365 (1051)
T ss_pred HhhcCc
Confidence 988764
No 35
>KOG4299 consensus PHD Zn-finger protein [General function prediction only]
Probab=98.38 E-value=2.1e-07 Score=108.90 Aligned_cols=51 Identities=37% Similarity=0.931 Sum_probs=42.3
Q ss_pred cceeccCCCCCCCCCCCCceeeCCCCCCcCCCCCCCCCcCCccCCCCCCCceecCCccch
Q 002334 646 GCLLCRGCDFSKSGFGPRTILLCDQCEREFHVGCLKKHKMADLRELPKGKWFCCMDCSRI 705 (935)
Q Consensus 646 ~C~iC~~~df~~sgf~~~tLL~CDqCdr~YHv~CL~p~~~~~L~evP~g~WfCc~~C~~i 705 (935)
+|..|+..+ .| ..+|.||.|++.||++||.|+- ..+.+|.|.||| +.|..+
T Consensus 255 fCsaCn~~~----~F--~~~i~CD~Cp~sFH~~CLePPl--~~eniP~g~W~C-~ec~~k 305 (613)
T KOG4299|consen 255 FCSACNGSG----LF--NDIICCDGCPRSFHQTCLEPPL--EPENIPPGSWFC-PECKIK 305 (613)
T ss_pred HHHHhCCcc----cc--ccceeecCCchHHHHhhcCCCC--CcccCCCCcccc-CCCeee
Confidence 799999764 34 5789999999999999999841 367899999999 889743
No 36
>KOG0383 consensus Predicted helicase [General function prediction only]
Probab=98.36 E-value=1.5e-07 Score=112.83 Aligned_cols=156 Identities=26% Similarity=0.459 Sum_probs=100.6
Q ss_pred CCCcccccccCC--CCCCCCCCccccccccccccccccccccccccccccccccchhhhhhhhhhhhccccccCCcceec
Q 002334 573 GCPRAFHKECAS--LSSIPQGDWYCKYCQNMFERKRFLQHDANAVEAGRVSGVDSVEQITKRCIRIVKNLEAELSGCLLC 650 (935)
Q Consensus 573 ~Cp~afH~~CL~--L~~vPeg~W~Cp~C~~~~~~ek~la~n~naia~gr~~Gvd~ieqi~~R~iR~vkd~e~e~~~C~iC 650 (935)
.|++.||..|++ +..-|+++|.||.|....-.. .+. ..+ -...+...|.+|
T Consensus 1 ~~~r~~~~~~~~p~~~~~~~~~~k~~~~e~~~~~~---------~~~----~~~--------------~~~~~~e~c~ic 53 (696)
T KOG0383|consen 1 TCPRAYHRVCLDPKLKEEPEMDPKCPGCESSSAQV---------EAK----DDD--------------WDDAEQEACRIC 53 (696)
T ss_pred CCCcccCcCCCCcccccCCcCCccCcchhhccccc---------ccc----cCC--------------cchhhhhhhhhh
Confidence 489999999997 556678999999997421000 000 000 012344679999
Q ss_pred cCCCCCCCCCCCCceeeCCCCCCcCCCCCCCCCcCCccCCCCCCCceecCCccc--hhHHHHHhhhhc--cccCc-hhhH
Q 002334 651 RGCDFSKSGFGPRTILLCDQCEREFHVGCLKKHKMADLRELPKGKWFCCMDCSR--INSVLQNLLVQE--AEKLP-EFHL 725 (935)
Q Consensus 651 ~~~df~~sgf~~~tLL~CDqCdr~YHv~CL~p~~~~~L~evP~g~WfCc~~C~~--i~~~LqkLva~g--~e~lp-~sll 725 (935)
+. .+++|.||.|..+||..|+.+ ++...|.++|.| +.|.. ...+.++++.+. +.+.+ ...-
T Consensus 54 ~~---------~g~~l~c~tC~~s~h~~cl~~----pl~~~p~~~~~c-~Rc~~p~~~~k~~~il~~~~~~~~~~~~~~~ 119 (696)
T KOG0383|consen 54 AD---------GGELLWCDTCPASFHASCLGP----PLTPQPNGEFIC-PRCFCPKNAGKIEKILGWRWKPTPKPREGNQ 119 (696)
T ss_pred cC---------CCcEEEeccccHHHHHHccCC----CCCcCCccceee-eeeccCCCcccccccceeEecCCCCccccCc
Confidence 85 468999999999999999987 788889888999 47832 223445555532 22222 1111
Q ss_pred hHhhhhccCccccccccCcceeEccCCCCChhhHHHHHHHHHhhh
Q 002334 726 NAIKKYAGNSLETVSDIDVRWRLLSGKAATPETRLLLSQAVAIFH 770 (935)
Q Consensus 726 ~~I~k~~e~gle~~~~~dikWqLLsgk~~s~e~~skLa~AL~If~ 770 (935)
+.+. +.....-..+.+.++|+.+++.++.|.....+...+..+-
T Consensus 120 ~~~~-~~~~~~~~~re~~vk~qg~s~~~c~~~~e~~~q~~~~~~~ 163 (696)
T KOG0383|consen 120 GVIS-PRRSNGIVEREFFVKWQGLSYWHCSWKSELLLQNPLNTLP 163 (696)
T ss_pred CccC-CcccccchhhhcccccccCCccchhHHHHHHhhhhcccch
Confidence 1111 1111122356789999999999999887777765555553
No 37
>PRK13688 hypothetical protein; Provisional
Probab=98.36 E-value=1.5e-06 Score=87.59 Aligned_cols=76 Identities=18% Similarity=0.260 Sum_probs=60.0
Q ss_pred EEeeCCeEEEEEEEEEe----------CCeeEEEeeeEeecCccCCChhHHHHHHHHHHhhhcCccEEEecChhhhHHHH
Q 002334 807 ILTVNSSVVSAGILRVF----------GQEVAELPLVATSKINHGKGYFQLLFACIEKLLSFLRVKSIVLPAAEEAESIW 876 (935)
Q Consensus 807 VL~~~~~vVsaA~lrv~----------g~~vAElplVAT~~~yRgqG~gr~L~~~IE~~L~~lgV~~LvLpA~~~a~~~w 876 (935)
+++.++++||++.+... ..+.++|-.++|+++|||||+|++||+.+++. ++. +.+.+...|..||
T Consensus 49 ~~~~~~~~VG~~~l~~~dg~~~~~~~~~~~~~~L~~l~V~p~~rgkGiG~~Ll~~a~~~----~~~-~~~~~~~~a~~FY 123 (156)
T PRK13688 49 GIYYGDSLVARMSLYKKGGVEEPYFEDTQDYLELWKLEVLPKYQNRGYGEMLVDFAKSF----QLP-IKTIARNKSKDFW 123 (156)
T ss_pred EEEECCEEEEEEEEEecCCcccccccCCCCeEEEEEEEECHHHcCCCHHHHHHHHHHHh----CCe-EEEEeccchHHHH
Confidence 34678999998887542 24678999999999999999999999876543 443 4455667789999
Q ss_pred HhccCcEEcCHH
Q 002334 877 TDKFGFKKIDPE 888 (935)
Q Consensus 877 ~~kfGF~~i~~~ 888 (935)
.+ +||..++..
T Consensus 124 ~k-~GF~~~~~~ 134 (156)
T PRK13688 124 LK-LGFTPVEYK 134 (156)
T ss_pred Hh-CCCEEeEEe
Confidence 99 999988765
No 38
>PRK10140 putative acetyltransferase YhhY; Provisional
Probab=98.34 E-value=2.7e-06 Score=82.70 Aligned_cols=85 Identities=18% Similarity=0.234 Sum_probs=68.5
Q ss_pred eEEEEEeeCCeEEEEEEEEEeC----CeeEEEeeeEeecCccCCChhHHHHHHHHHHhhh-cCccEEEecCh---hhhHH
Q 002334 803 MYCAILTVNSSVVSAGILRVFG----QEVAELPLVATSKINHGKGYFQLLFACIEKLLSF-LRVKSIVLPAA---EEAES 874 (935)
Q Consensus 803 fY~~VL~~~~~vVsaA~lrv~g----~~vAElplVAT~~~yRgqG~gr~L~~~IE~~L~~-lgV~~LvLpA~---~~a~~ 874 (935)
.+.++...++++||.+.+.... ...+++. +++.++|||||+|+.|++.+++.+.. +|..++++... ..|..
T Consensus 51 ~~~~v~~~~~~~vG~~~~~~~~~~~~~~~~~~~-~~v~p~~rg~Gig~~ll~~l~~~~~~~~~~~~i~l~v~~~N~~a~~ 129 (162)
T PRK10140 51 IKQLVACIDGDVVGHLTIDVQQRPRRSHVADFG-ICVDSRWKNRGVASALMREMIEMCDNWLRVDRIELTVFVDNAPAIK 129 (162)
T ss_pred cEEEEEEECCEEEEEEEEecccccccceEEEEE-EEECHHHcCCCHHHHHHHHHHHHHHhhCCccEEEEEEEcCCHHHHH
Confidence 4556667889999999987542 2356664 89999999999999999999999988 79888776653 56788
Q ss_pred HHHhccCcEEcCHHH
Q 002334 875 IWTDKFGFKKIDPEL 889 (935)
Q Consensus 875 ~w~~kfGF~~i~~~e 889 (935)
+|++ +||+..+...
T Consensus 130 ~y~k-~GF~~~g~~~ 143 (162)
T PRK10140 130 VYKK-YGFEIEGTGK 143 (162)
T ss_pred HHHH-CCCEEEeecc
Confidence 9998 9999887633
No 39
>PRK09831 putative acyltransferase; Provisional
Probab=98.32 E-value=1.6e-06 Score=84.56 Aligned_cols=73 Identities=14% Similarity=0.156 Sum_probs=61.7
Q ss_pred EEEeeCCeEEEEEEEEEeCCeeEEEeeeEeecCccCCChhHHHHHHHHHHhhhcCccEEEecChhhhHHHHHhccCcEEc
Q 002334 806 AILTVNSSVVSAGILRVFGQEVAELPLVATSKINHGKGYFQLLFACIEKLLSFLRVKSIVLPAAEEAESIWTDKFGFKKI 885 (935)
Q Consensus 806 ~VL~~~~~vVsaA~lrv~g~~vAElplVAT~~~yRgqG~gr~L~~~IE~~L~~lgV~~LvLpA~~~a~~~w~~kfGF~~i 885 (935)
+|...+|++||.+.+.. +.+..++|+++|||||+|++||..+++.+.. +.+.+...|..||.+ +||..+
T Consensus 56 ~v~~~~~~iiG~~~~~~-----~~i~~~~v~p~~~g~GiG~~Ll~~~~~~~~~-----l~v~~~~~a~~~Y~k-~Gf~~~ 124 (147)
T PRK09831 56 RVAVINAQPVGFITCIE-----HYIDMLFVDPEYTRRGVASALLKPLIKSESE-----LTVDASITAKPFFER-YGFQTV 124 (147)
T ss_pred EEEEECCEEEEEEEehh-----ceeeeEEECHHHcCCCHHHHHHHHHHHHhhh-----eEeecchhhHHHHHH-CCCEEe
Confidence 34578999999988742 4677899999999999999999999999876 455666789999999 999999
Q ss_pred CHHH
Q 002334 886 DPEL 889 (935)
Q Consensus 886 ~~~e 889 (935)
+...
T Consensus 125 g~~~ 128 (147)
T PRK09831 125 KQQR 128 (147)
T ss_pred eccc
Confidence 8865
No 40
>PHA00673 acetyltransferase domain containing protein
Probab=98.27 E-value=5.1e-06 Score=83.88 Aligned_cols=83 Identities=13% Similarity=0.089 Sum_probs=72.7
Q ss_pred eEEEEEeeCCeEEEEEEEEEeC------CeeEEEeeeEeecCccCCChhHHHHHHHHHHhhhcCccEEEecChhh--hHH
Q 002334 803 MYCAILTVNSSVVSAGILRVFG------QEVAELPLVATSKINHGKGYFQLLFACIEKLLSFLRVKSIVLPAAEE--AES 874 (935)
Q Consensus 803 fY~~VL~~~~~vVsaA~lrv~g------~~vAElplVAT~~~yRgqG~gr~L~~~IE~~L~~lgV~~LvLpA~~~--a~~ 874 (935)
-..+|.+.+|++||++.+.+.. ...+.|-.|-|++++||||+|++||..+++.++..|...|.++|.++ .+.
T Consensus 55 ~~llVa~~~g~vVG~~~l~~~p~l~~~~~~~~~Ie~l~V~~~~RGqGIG~~Ll~~A~~~Ar~~Gc~~lyis~~p~~~tv~ 134 (154)
T PHA00673 55 AHFLGVFRGEELVGFACLLVTPVPHFKGQLIGTTESIFVAAAHRPGGAGMALLRATEALARDLGATGLYVSGPTEGRLVQ 134 (154)
T ss_pred cEEEEEEECCEEEEEEEEEEecCCccCCccEEEEEEEEEChhccCCCHHHHHHHHHHHHHHHCCCCEEEEecCCCccchH
Confidence 4455667899999999887655 35778999999999999999999999999999999999999999886 689
Q ss_pred HHHhccCcEEcC
Q 002334 875 IWTDKFGFKKID 886 (935)
Q Consensus 875 ~w~~kfGF~~i~ 886 (935)
||.+ .|++...
T Consensus 135 fy~~-~g~~~~~ 145 (154)
T PHA00673 135 LLPA-AGYRETN 145 (154)
T ss_pred HHHh-CCchhhc
Confidence 9999 9998654
No 41
>KOG4443 consensus Putative transcription factor HALR/MLL3, involved in embryonic development [General function prediction only]
Probab=98.25 E-value=3.7e-07 Score=107.07 Aligned_cols=79 Identities=32% Similarity=0.924 Sum_probs=64.7
Q ss_pred CCCceecccCCCcccccccCCC--CC-CCCCCccccccccccccccccccccccccccccccccchhhhhhhhhhhhccc
Q 002334 564 DGGNLLPCDGCPRAFHKECASL--SS-IPQGDWYCKYCQNMFERKRFLQHDANAVEAGRVSGVDSVEQITKRCIRIVKNL 640 (935)
Q Consensus 564 dgG~Ll~CD~Cp~afH~~CL~L--~~-vPeg~W~Cp~C~~~~~~ek~la~n~naia~gr~~Gvd~ieqi~~R~iR~vkd~ 640 (935)
-.|.|+-|..|...||.+|+.+ .. +-.+-|.||.|+.
T Consensus 31 ~ag~m~ac~~c~~~yH~~cvt~~~~~~~l~~gWrC~~crv---------------------------------------- 70 (694)
T KOG4443|consen 31 RAGRLLACSDCGQKYHPYCVTSWAQHAVLSGGWRCPSCRV---------------------------------------- 70 (694)
T ss_pred ccCcchhhhhhcccCCcchhhHHHhHHHhcCCcccCCcee----------------------------------------
Confidence 3567999999999999999962 11 1234599999973
Q ss_pred cccCCcceeccCCCCCCCCCCCCceeeCCCCCCcCCCCCCCCCcCCccCCCCCCCcee
Q 002334 641 EAELSGCLLCRGCDFSKSGFGPRTILLCDQCEREFHVGCLKKHKMADLRELPKGKWFC 698 (935)
Q Consensus 641 e~e~~~C~iC~~~df~~sgf~~~tLL~CDqCdr~YHv~CL~p~~~~~L~evP~g~WfC 698 (935)
|..|+..+ ++...++|+.|+-.||.+|..| +++.+|.|.|+|
T Consensus 71 ------Ce~c~~~g------D~~kf~~Ck~cDvsyh~yc~~P----~~~~v~sg~~~c 112 (694)
T KOG4443|consen 71 ------CEACGTTG------DPKKFLLCKRCDVSYHCYCQKP----PNDKVPSGPWLC 112 (694)
T ss_pred ------eeeccccC------CcccccccccccccccccccCC----ccccccCccccc
Confidence 77787432 6788999999999999999998 788999999999
No 42
>TIGR03448 mycothiol_MshD mycothiol biosynthesis acetyltransferase. Members of this family are MshD, the acetyltransferase that catalyzes the final step of mycothiol biosynthesis in various members of the Actinomyctes, Mycothiol replaces glutathione in these species.
Probab=98.18 E-value=9.7e-06 Score=87.49 Aligned_cols=81 Identities=7% Similarity=0.000 Sum_probs=64.9
Q ss_pred EEEEEeeCCeEEEEEEEEEeCCeeEEEeeeEeecCccCCChhHHHHHHHHHHhhhcCccEEEecCh-hhhHHHHHhccCc
Q 002334 804 YCAILTVNSSVVSAGILRVFGQEVAELPLVATSKINHGKGYFQLLFACIEKLLSFLRVKSIVLPAA-EEAESIWTDKFGF 882 (935)
Q Consensus 804 Y~~VL~~~~~vVsaA~lrv~g~~vAElplVAT~~~yRgqG~gr~L~~~IE~~L~~lgV~~LvLpA~-~~a~~~w~~kfGF 882 (935)
+.+|...++++||.+.+.......+++-.++|+|+|||||+|+.||..+++.+. +--.|++... ..|+.||.+ +||
T Consensus 47 ~~~~~~~~~~~vG~~~~~~~~~~~~~~~~l~V~p~~rg~GiG~~Ll~~~~~~~~--~~~~~~~~~~n~~a~~fy~~-~Gf 123 (292)
T TIGR03448 47 RHLVAVDSDPIVGYANLVPARGTDPAMAELVVHPAHRRRGIGRALIRALLAKGG--GRLRVWAHGDLPAARALASR-LGL 123 (292)
T ss_pred eEEEEEECCEEEEEEEEEcCCCCcceEEEEEECHhhcCCCHHHHHHHHHHHhcc--CceEEEEcCCCHHHHHHHHH-CCC
Confidence 345567889999999988875556788899999999999999999999999865 2234555543 568999999 999
Q ss_pred EEcCH
Q 002334 883 KKIDP 887 (935)
Q Consensus 883 ~~i~~ 887 (935)
+.+..
T Consensus 124 ~~~~~ 128 (292)
T TIGR03448 124 VPTRE 128 (292)
T ss_pred EEccE
Confidence 87765
No 43
>TIGR03448 mycothiol_MshD mycothiol biosynthesis acetyltransferase. Members of this family are MshD, the acetyltransferase that catalyzes the final step of mycothiol biosynthesis in various members of the Actinomyctes, Mycothiol replaces glutathione in these species.
Probab=98.16 E-value=7.3e-06 Score=88.44 Aligned_cols=86 Identities=16% Similarity=0.220 Sum_probs=68.2
Q ss_pred cceEEEEEeeCCeEEEEEEEEEeCC--eeEEEeeeEeecCccCCChhHHHHHHHHHHhhhcCccEEEecCh---hhhHHH
Q 002334 801 GGMYCAILTVNSSVVSAGILRVFGQ--EVAELPLVATSKINHGKGYFQLLFACIEKLLSFLRVKSIVLPAA---EEAESI 875 (935)
Q Consensus 801 ~GfY~~VL~~~~~vVsaA~lrv~g~--~vAElplVAT~~~yRgqG~gr~L~~~IE~~L~~lgV~~LvLpA~---~~a~~~ 875 (935)
.++|.++-..++++||.+.+.+... +.++|-.++|+++|||||+|+.||..+++.++..|+..+.+... ..|..|
T Consensus 198 ~~~~~a~~~~~~~~vG~~~~~~~~~~~~~~~i~~~~V~p~~rg~GiG~~ll~~~~~~~~~~g~~~v~l~v~~~N~~a~~~ 277 (292)
T TIGR03448 198 AGLFLAFDDAPGELLGFHWTKVHPDEPALGEVYVVGVDPAAQGRGLGDALTLIGLHHLAARGLPAVMLYVEADNEAAVRT 277 (292)
T ss_pred CceEEEEECCCCcEEEEEEEEecCCCCceeEEEEEEECHHHcCCCHHHHHHHHHHHHHHHCCCCEEEEEEeCCCHHHHHH
Confidence 3455443222689999876666542 46888889999999999999999999999999999998887654 368999
Q ss_pred HHhccCcEEcCH
Q 002334 876 WTDKFGFKKIDP 887 (935)
Q Consensus 876 w~~kfGF~~i~~ 887 (935)
|++ +||+..+.
T Consensus 278 y~k-~GF~~~~~ 288 (292)
T TIGR03448 278 YEK-LGFTVAEV 288 (292)
T ss_pred HHH-cCCEEccc
Confidence 998 99997653
No 44
>KOG3139 consensus N-acetyltransferase [General function prediction only]
Probab=98.15 E-value=1.2e-05 Score=81.21 Aligned_cols=73 Identities=16% Similarity=0.171 Sum_probs=62.2
Q ss_pred EEEEEEEEEeCC---eeEEEeeeEeecCccCCChhHHHHHHHHHHhhhcCccEEEecCh---hhhHHHHHhccCcEEcCH
Q 002334 814 VVSAGILRVFGQ---EVAELPLVATSKINHGKGYFQLLFACIEKLLSFLRVKSIVLPAA---EEAESIWTDKFGFKKIDP 887 (935)
Q Consensus 814 vVsaA~lrv~g~---~vAElplVAT~~~yRgqG~gr~L~~~IE~~L~~lgV~~LvLpA~---~~a~~~w~~kfGF~~i~~ 887 (935)
.|||........ .-++|-.+||+++|||||+|++|+..+.+.+++.|...++|.+. ..|..+|++ |||.....
T Consensus 68 ~VGai~ck~~~~r~~~rgyi~mLaV~~e~Rg~GIg~aLvr~aId~m~~~g~~eVvLeTe~~n~~A~~LY~s-LGF~r~~r 146 (165)
T KOG3139|consen 68 TVGAIVCKLDTHRNTLRGYIAMLAVDSEYRGQGIGKALVRKAIDAMRSRGYSEVVLETEVTNLSALRLYES-LGFKRDKR 146 (165)
T ss_pred eEEEEEEeccccCCcceEEEEEEEechhhccccHHHHHHHHHHHHHHHCCCcEEEEeccccchHHHHHHHh-cCceEecc
Confidence 477666544332 35999999999999999999999999999999999999999875 468999999 99998654
No 45
>KOG3396 consensus Glucosamine-phosphate N-acetyltransferase [Cell wall/membrane/envelope biogenesis]
Probab=98.15 E-value=7.5e-06 Score=80.60 Aligned_cols=83 Identities=16% Similarity=0.223 Sum_probs=74.6
Q ss_pred eEEEEEee--CCeEEEEEEEEEeC------CeeEEEeeeEeecCccCCChhHHHHHHHHHHhhhcCccEEEecChhhhHH
Q 002334 803 MYCAILTV--NSSVVSAGILRVFG------QEVAELPLVATSKINHGKGYFQLLFACIEKLLSFLRVKSIVLPAAEEAES 874 (935)
Q Consensus 803 fY~~VL~~--~~~vVsaA~lrv~g------~~vAElplVAT~~~yRgqG~gr~L~~~IE~~L~~lgV~~LvLpA~~~a~~ 874 (935)
+|.+|++. .++||++|+|.|.- ..-.+|-=|+|+++||||++|+.|+..+-.++.++|+=.+.|.-.++..+
T Consensus 53 Y~i~Vied~~s~~vigtatL~IE~KfIh~~g~rGhiEDVVV~~~~rgk~LGkllv~~Lv~l~k~lgcYKi~LdC~~~nv~ 132 (150)
T KOG3396|consen 53 YYIVVIEDKESEKVIGTATLFIERKFIHGCGSRGHIEDVVVDSEYRGKQLGKLLVETLVDLAKSLGCYKIILDCDPKNVK 132 (150)
T ss_pred EEEEEEEeCCcCeEEEEEEEEEehhhhhcccccCceeEEEeChhhhhhHHhHHHHHHHHHHHHhcCcEEEEEecchhhhh
Confidence 78888885 48999999997643 23568888999999999999999999999999999999999999999999
Q ss_pred HHHhccCcEEcC
Q 002334 875 IWTDKFGFKKID 886 (935)
Q Consensus 875 ~w~~kfGF~~i~ 886 (935)
||.+ |||+..+
T Consensus 133 FYeK-cG~s~~~ 143 (150)
T KOG3396|consen 133 FYEK-CGYSNAG 143 (150)
T ss_pred HHHH-cCccccc
Confidence 9999 9999766
No 46
>TIGR02406 ectoine_EctA L-2,4-diaminobutyric acid acetyltransferase. This enzyme family is the EctA of ectoine biosynthesis. Ectoine is a compatible solute, analagous to trehalose, betaines, etc., found often in halotolerant organisms. EctA is L-2,4-diaminobutyric acid acetyltransferase, also called DABA acetyltransferase.
Probab=98.10 E-value=1.2e-05 Score=80.16 Aligned_cols=83 Identities=12% Similarity=0.089 Sum_probs=65.9
Q ss_pred EEEEEe-eCCeEEEEEEEEE--eCCeeEEEeeeEeecCccCCChhHHHHHHHHHHhhhcCccEEEecC---hhhhHHHHH
Q 002334 804 YCAILT-VNSSVVSAGILRV--FGQEVAELPLVATSKINHGKGYFQLLFACIEKLLSFLRVKSIVLPA---AEEAESIWT 877 (935)
Q Consensus 804 Y~~VL~-~~~~vVsaA~lrv--~g~~vAElplVAT~~~yRgqG~gr~L~~~IE~~L~~lgV~~LvLpA---~~~a~~~w~ 877 (935)
+.+|.+ .++++||.+.+.. ...+.+.+-.+||+++|||||+|+.|+..+++.+...++.+|.+.. -..|..+|+
T Consensus 40 ~~~v~~~~~~~ivG~~~~~~~~~~~~~~~i~~l~V~p~~rg~GiG~~L~~~l~~~a~~~~~~~i~~~v~~~N~~a~~ly~ 119 (157)
T TIGR02406 40 TSIVAESEGGEIVGFVSGYLRPDRPDVLFVWQVAVDPRARGKGLARRLLEALLERVACERVRHLETTITPDNQASRALFK 119 (157)
T ss_pred cEEEEEcCCCeEEEEEEEEecCCCCCeEEEEEEEEChHhccCcHHHHHHHHHHHHHHhCCCCEEEEEEcCCCHHHHHHHH
Confidence 345556 4679999876533 2345788999999999999999999999999999999988887654 446788998
Q ss_pred hccCcEEcCH
Q 002334 878 DKFGFKKIDP 887 (935)
Q Consensus 878 ~kfGF~~i~~ 887 (935)
+ +||+....
T Consensus 120 k-~G~~~~~~ 128 (157)
T TIGR02406 120 A-LARRRGVH 128 (157)
T ss_pred H-hCcccCCC
Confidence 8 99976443
No 47
>COG0456 RimI Acetyltransferases [General function prediction only]
Probab=98.07 E-value=1.6e-05 Score=78.64 Aligned_cols=76 Identities=22% Similarity=0.251 Sum_probs=63.2
Q ss_pred eEEEEEEEE-EeCC----eeEEEeeeEeecCccCCChhHHHHHHHHHHhhhcCc-cEEEecChh---hhHHHHHhccCcE
Q 002334 813 SVVSAGILR-VFGQ----EVAELPLVATSKINHGKGYFQLLFACIEKLLSFLRV-KSIVLPAAE---EAESIWTDKFGFK 883 (935)
Q Consensus 813 ~vVsaA~lr-v~g~----~vAElplVAT~~~yRgqG~gr~L~~~IE~~L~~lgV-~~LvLpA~~---~a~~~w~~kfGF~ 883 (935)
+++|....+ +.+. ..++|-.+||+|+|||+|+|++|+..+++.+...+. +.++|-... .|+.+|.+ +||+
T Consensus 72 ~~~G~~~~~~~~~~~~~~~~~~i~~iaV~p~~r~~Gig~~Ll~~~~~~~~~~~~~~~~~L~V~~~N~~Ai~lY~~-~GF~ 150 (177)
T COG0456 72 KVVGFLLVRVVDGRPSADHEGHIYNLAVDPEYRGRGIGRALLDEALERLRERGLADKIVLEVRESNEAAIGLYRK-LGFE 150 (177)
T ss_pred ceeEEEEEEEecCCccccCccEEEEEEEChHhhcCCHHHHHHHHHHHHHHhcCCCceEEEEEecCChHHHHHHHH-cCCE
Confidence 477777775 3332 279999999999999999999999999999999986 787777654 48999999 9999
Q ss_pred EcCHHH
Q 002334 884 KIDPEL 889 (935)
Q Consensus 884 ~i~~~e 889 (935)
.+....
T Consensus 151 ~~~~~~ 156 (177)
T COG0456 151 VVKIRK 156 (177)
T ss_pred EEeeeh
Confidence 987644
No 48
>TIGR03103 trio_acet_GNAT GNAT-family acetyltransferase TIGR03103. Members of this protein family belong to the GNAT family of acetyltransferases. Each is part of a conserved three-gene cassette sparsely distributed across at least twenty different species known so far, including alpha, beta, and gamma Proteobacteria, Mycobacterium, and Prosthecochloris, which is a member of the Chlorobi. The other two members of the cassette are a probable protease and an asparagine synthetase family protein.
Probab=98.05 E-value=1.5e-05 Score=94.83 Aligned_cols=85 Identities=12% Similarity=0.133 Sum_probs=67.8
Q ss_pred ceEEEEEee--CCeEEEEEEEEEe------CCeeEEEeeeEeecCccCCChhHHHHHHHHHHhhhcCccEEEecC---hh
Q 002334 802 GMYCAILTV--NSSVVSAGILRVF------GQEVAELPLVATSKINHGKGYFQLLFACIEKLLSFLRVKSIVLPA---AE 870 (935)
Q Consensus 802 GfY~~VL~~--~~~vVsaA~lrv~------g~~vAElplVAT~~~yRgqG~gr~L~~~IE~~L~~lgV~~LvLpA---~~ 870 (935)
+.+.+|.+. +|++||.+....+ +...++|-.|+|+++|||||+|++||..+++.++..|+.+++|.. -.
T Consensus 122 ~~~~~vA~~~~~g~IVG~~~~~~~~~~~~d~~~~~~i~~l~V~P~~Rg~GIG~~Ll~~l~e~a~~~G~~~i~L~V~~~N~ 201 (547)
T TIGR03103 122 AITYLVAEDEASGAIIGTVMGVDHRKAFNDPEHGSSLWCLAVDPQAAHPGVGEALVRALAEHFQSRGCAYMDLSVMHDNE 201 (547)
T ss_pred CceEEEEEECCCCeEEEEEEEEeccccccCCCCCeEEEEEEECHHHcCCCHHHHHHHHHHHHHHHCCCCEEEEEEcCCCH
Confidence 444555553 6999999875322 123478889999999999999999999999999999999987653 46
Q ss_pred hhHHHHHhccCcEEcCH
Q 002334 871 EAESIWTDKFGFKKIDP 887 (935)
Q Consensus 871 ~a~~~w~~kfGF~~i~~ 887 (935)
.|..||.+ +||+.++.
T Consensus 202 ~Ai~fY~k-lGf~~~~~ 217 (547)
T TIGR03103 202 QAIALYEK-LGFRRIPV 217 (547)
T ss_pred HHHHHHHH-CCCEEeeE
Confidence 78999998 99988754
No 49
>PF13420 Acetyltransf_4: Acetyltransferase (GNAT) domain; PDB: 3DR8_A 3DR6_A 2AE6_B 2JLM_C 2J8R_A 1YVO_B 2J8M_A 2J8N_A 2BL1_A 3IWG_A ....
Probab=98.04 E-value=3e-05 Score=75.26 Aligned_cols=76 Identities=22% Similarity=0.280 Sum_probs=63.0
Q ss_pred eCCeEEEEEEEEEeCC--eeEEEeeeEeecCccCCChhHHHHHHHHHHh-hhcCccEEEecC---hhhhHHHHHhccCcE
Q 002334 810 VNSSVVSAGILRVFGQ--EVAELPLVATSKINHGKGYFQLLFACIEKLL-SFLRVKSIVLPA---AEEAESIWTDKFGFK 883 (935)
Q Consensus 810 ~~~~vVsaA~lrv~g~--~vAElplVAT~~~yRgqG~gr~L~~~IE~~L-~~lgV~~LvLpA---~~~a~~~w~~kfGF~ 883 (935)
.+|++||.+.++.... ..+++- +-+.++||++|+|+.|+..+++.+ ..+|+++|.+.. -..++.||++ +||+
T Consensus 58 ~~g~iiG~~~~~~~~~~~~~~~~~-~~v~~~~~~~gig~~l~~~l~~~af~~~~~~~i~~~v~~~N~~~i~~~~~-~GF~ 135 (155)
T PF13420_consen 58 EDGKIIGYVSLRDIDPYNHTAELS-IYVSPDYRGKGIGRKLLDELIEYAFKELGIHKIYLEVFSSNEKAINFYKK-LGFE 135 (155)
T ss_dssp CTTEEEEEEEEEESSSGTTEEEEE-EEEEGGGTTSSHHHHHHHHHHHHH-HHTT-CEEEEEEETT-HHHHHHHHH-TTEE
T ss_pred cCCcEEEEEEEEeeeccCCEEEEe-eEEChhHCCCcHHHHHHHHHHHHhhhccCeEEEEEEEecCCHHHHHHHHh-CCCE
Confidence 5999999999986553 578887 445599999999999999999999 999999987543 4468999999 9999
Q ss_pred EcCH
Q 002334 884 KIDP 887 (935)
Q Consensus 884 ~i~~ 887 (935)
..+.
T Consensus 136 ~~g~ 139 (155)
T PF13420_consen 136 EEGE 139 (155)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 8765
No 50
>cd04301 NAT_SF N-Acyltransferase superfamily: Various enzymes that characteristically catalyze the transfer of an acyl group to a substrate. NAT (N-Acyltransferase) is a large superfamily of enzymes that mostly catalyze the transfer of an acyl group to a substrate and are implicated in a variety of functions, ranging from bacterial antibiotic resistance to circadian rhythms in mammals. Members include GCN5-related N-Acetyltransferases (GNAT) such as Aminoglycoside N-acetyltransferases, Histone N-acetyltransferase (HAT) enzymes, and Serotonin N-acetyltransferase, which catalyze the transfer of an acetyl group to a substrate. The kinetic mechanism of most GNATs involves the ordered formation of a ternary complex: the reaction begins with Acetyl Coenzyme A (AcCoA) binding, followed by binding of substrate, then direct transfer of the acetyl group from AcCoA to the substrate, followed by product and subsequent CoA release. Other family members include Arginine/ornithine N-succinyltransfera
Probab=98.03 E-value=2.3e-05 Score=62.24 Aligned_cols=61 Identities=20% Similarity=0.117 Sum_probs=55.0
Q ss_pred EEEeeCCeEEEEEEEEEeC--CeeEEEeeeEeecCccCCChhHHHHHHHHHHhhhcCccEEEe
Q 002334 806 AILTVNSSVVSAGILRVFG--QEVAELPLVATSKINHGKGYFQLLFACIEKLLSFLRVKSIVL 866 (935)
Q Consensus 806 ~VL~~~~~vVsaA~lrv~g--~~vAElplVAT~~~yRgqG~gr~L~~~IE~~L~~lgV~~LvL 866 (935)
++++.++++||.+.+.... ...+++-.++|+++|||+|+|+.|+..+.+.+...|.+++++
T Consensus 2 ~~~~~~~~~ig~~~~~~~~~~~~~~~l~~~~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~v~~ 64 (65)
T cd04301 2 LVAEDDGEIVGFASLSPDGSGGDTAYIGDLAVLPEYRGKGIGSALLEAAEEEARERGAKRLRL 64 (65)
T ss_pred EEEecCCEEEEEEEEEecCCCCccEEEEEEEECHHHcCcCHHHHHHHHHHHHHHHcCCcEEEe
Confidence 3456789999999988866 478999999999999999999999999999999999999886
No 51
>PHA01807 hypothetical protein
Probab=98.01 E-value=1.6e-05 Score=80.09 Aligned_cols=81 Identities=7% Similarity=-0.008 Sum_probs=63.6
Q ss_pred EEEEEeeCCeEEEEEEEEEeCC----eeEEEeeeEeecCccCCChhHHHHHHHHHHhhhcCccEEEecChh---hhHHHH
Q 002334 804 YCAILTVNSSVVSAGILRVFGQ----EVAELPLVATSKINHGKGYFQLLFACIEKLLSFLRVKSIVLPAAE---EAESIW 876 (935)
Q Consensus 804 Y~~VL~~~~~vVsaA~lrv~g~----~vAElplVAT~~~yRgqG~gr~L~~~IE~~L~~lgV~~LvLpA~~---~a~~~w 876 (935)
+.++++.+|++||.+.+..... .+.+|..+.|+++|||+|+|+.||+.+++.++..|+..|.+-... .|..+|
T Consensus 54 ~~lva~~dg~lvG~~~l~~~~~~~~~~i~~l~~lYV~pe~RG~GiG~~Ll~~~~~~Ar~~G~~~l~l~v~~~n~~a~~~y 133 (153)
T PHA01807 54 TELLVFRDGKLAGIAVLVFEDDPHVGPCLGVQWQYVLPEYRNAGVAREFLRELIRLAGEGNLPLIAFSHREGEGRYTIHY 133 (153)
T ss_pred eEEEEEECCEEEEEEEEEcCCCcceeeeccceeEEECHHHcCCCHHHHHHHHHHHHHHHCCCCEEEEEecCCcHHHHHHH
Confidence 3355678999999999865432 234455579999999999999999999999999999999887655 467788
Q ss_pred HhccCcEEcCH
Q 002334 877 TDKFGFKKIDP 887 (935)
Q Consensus 877 ~~kfGF~~i~~ 887 (935)
.+ |++.+.
T Consensus 134 ~~---~~~~~~ 141 (153)
T PHA01807 134 RR---VKPYGQ 141 (153)
T ss_pred Hh---cCccCC
Confidence 88 455444
No 52
>PF08445 FR47: FR47-like protein; InterPro: IPR013653 Proteins in this entry have a conserved region similar to the C-terminal region of the Drosophila melanogaster (Fruit fly) hypothetical protein FR47 (Q9VR51 from SWISSPROT). This protein has been found to consist of two N-acyltransferase-like domains swapped with the C-terminal strands. ; GO: 0016747 transferase activity, transferring acyl groups other than amino-acyl groups; PDB: 1SQH_A 3EC4_B.
Probab=98.00 E-value=2.8e-05 Score=70.86 Aligned_cols=75 Identities=16% Similarity=0.207 Sum_probs=56.3
Q ss_pred CCeEEEEEEEEEeCCeeEEEeeeEeecCccCCChhHHHHHHHHHHhhhcCccEE-Eec-ChhhhHHHHHhccCcEEcCH
Q 002334 811 NSSVVSAGILRVFGQEVAELPLVATSKINHGKGYFQLLFACIEKLLSFLRVKSI-VLP-AAEEAESIWTDKFGFKKIDP 887 (935)
Q Consensus 811 ~~~vVsaA~lrv~g~~vAElplVAT~~~yRgqG~gr~L~~~IE~~L~~lgV~~L-vLp-A~~~a~~~w~~kfGF~~i~~ 887 (935)
+++.+..+.-.+..+. ++|-.|.|.|+|||+|+|+.|+.++.+.+.+.|..-+ ++. .-..+..+|++ +||+.+.+
T Consensus 6 ~~~~~~l~~~~~~~~~-g~i~~v~t~p~~RrrGlg~~lv~~l~~~~~~~g~~~~l~v~~~N~~s~~ly~k-lGf~~~~~ 82 (86)
T PF08445_consen 6 DGELVALVAWIIRSDD-GEIGGVYTLPEHRRRGLGSALVAALARELLERGKTPFLYVDADNEASIRLYEK-LGFREIEE 82 (86)
T ss_dssp CTCCEEEEEEEEESCT-CCEEEEEE-GGGTTSSHHHHHHHHHHHHHHHTTSEEEEEEETT-HHHHHHHHH-CT-EEEEE
T ss_pred ECCccceeeEeeeCCC-cEEEEEEECHHHcCCCHHHHHHHHHHHHHHhCCCcEEEEEECCCHHHHHHHHH-cCCEEEEE
Confidence 3455566665565555 9999999999999999999999999999888887753 333 33457899999 99998754
No 53
>PRK01346 hypothetical protein; Provisional
Probab=97.98 E-value=2.5e-05 Score=88.93 Aligned_cols=80 Identities=16% Similarity=0.127 Sum_probs=67.7
Q ss_pred EEEEeeCCeEEEEEEEEEe------CC--eeEEEeeeEeecCccCCChhHHHHHHHHHHhhhcCccEEEecChhhhHHHH
Q 002334 805 CAILTVNSSVVSAGILRVF------GQ--EVAELPLVATSKINHGKGYFQLLFACIEKLLSFLRVKSIVLPAAEEAESIW 876 (935)
Q Consensus 805 ~~VL~~~~~vVsaA~lrv~------g~--~vAElplVAT~~~yRgqG~gr~L~~~IE~~L~~lgV~~LvLpA~~~a~~~w 876 (935)
+++.+.++++||.+.+..+ |. ..+.|-.|||+|+|||||+|++||..+++.+++.|+..++|.+.. ..||
T Consensus 49 ~~va~~~~~lvg~~~~~~~~~~~~~~~~~~~~~i~~v~V~P~~RgrGig~~Ll~~~l~~a~~~g~~~~~L~~~~--~~~Y 126 (411)
T PRK01346 49 TLGAFDGDEVVGTAGAFDLRLTVPGGAVLPAAGVTAVTVAPTHRRRGLLTALMREQLRRIRERGEPVAALTASE--GGIY 126 (411)
T ss_pred eEEEEECCEEEEEEEEeccccccCCCCccceeEEEEEEEChhhcCCCHHHHHHHHHHHHHHHCCCcEEEEECCc--hhhH
Confidence 3556789999999887543 32 478999999999999999999999999999999999988887664 4789
Q ss_pred HhccCcEEcCH
Q 002334 877 TDKFGFKKIDP 887 (935)
Q Consensus 877 ~~kfGF~~i~~ 887 (935)
.+ |||.....
T Consensus 127 ~r-~Gf~~~~~ 136 (411)
T PRK01346 127 GR-FGYGPATY 136 (411)
T ss_pred hh-CCCeeccc
Confidence 98 99987765
No 54
>PRK10562 putative acetyltransferase; Provisional
Probab=97.92 E-value=4e-05 Score=74.48 Aligned_cols=76 Identities=11% Similarity=0.103 Sum_probs=58.8
Q ss_pred EEEeeCCeEEEEEEEEEeCCeeEEEeeeEeecCccCCChhHHHHHHHHHHhhhcCccEEEecChhhhHHHHHhccCcEEc
Q 002334 806 AILTVNSSVVSAGILRVFGQEVAELPLVATSKINHGKGYFQLLFACIEKLLSFLRVKSIVLPAAEEAESIWTDKFGFKKI 885 (935)
Q Consensus 806 ~VL~~~~~vVsaA~lrv~g~~vAElplVAT~~~yRgqG~gr~L~~~IE~~L~~lgV~~LvLpA~~~a~~~w~~kfGF~~i 885 (935)
+++..++++||.+.+... ..+-.++|+++|||+|+|+.||..+++.+..+.+ .+...-..+..||++ +||+.+
T Consensus 51 ~v~~~~~~~iG~~~~~~~----~~i~~~~v~~~~rg~G~g~~ll~~~~~~~~~~~~--~v~~~N~~s~~~y~k-~Gf~~~ 123 (145)
T PRK10562 51 WVWEEDGKLLGFVSVLEG----RFVGALFVAPKAVRRGIGKALMQHVQQRYPHLSL--EVYQKNQRAVNFYHA-QGFRIV 123 (145)
T ss_pred EEEEECCEEEEEEEEeec----cEEEEEEECHHHcCCCHHHHHHHHHHhhCCeEEE--EEEcCChHHHHHHHH-CCCEEc
Confidence 455678899999887432 3577899999999999999999999997654332 233445578999999 999998
Q ss_pred CHH
Q 002334 886 DPE 888 (935)
Q Consensus 886 ~~~ 888 (935)
+..
T Consensus 124 ~~~ 126 (145)
T PRK10562 124 DSA 126 (145)
T ss_pred ccc
Confidence 863
No 55
>TIGR01686 FkbH FkbH-like domain. The C-terminal portion of this domain is unique to this family (by BLAST).
Probab=97.91 E-value=4.4e-05 Score=84.88 Aligned_cols=82 Identities=11% Similarity=0.026 Sum_probs=68.9
Q ss_pred ceEEEEEee---CCeEEEEEEEEEeCCeeEEEeeeEeecCccCCChhHHHHHHHHHHhhhcCccEEEecCh-----hhhH
Q 002334 802 GMYCAILTV---NSSVVSAGILRVFGQEVAELPLVATSKINHGKGYFQLLFACIEKLLSFLRVKSIVLPAA-----EEAE 873 (935)
Q Consensus 802 GfY~~VL~~---~~~vVsaA~lrv~g~~vAElplVAT~~~yRgqG~gr~L~~~IE~~L~~lgV~~LvLpA~-----~~a~ 873 (935)
..|++.+.. ++.+||.+.++..+ +.++|-.+++++.|||+|+|++||.++++.++..|+.+|+|... ..|.
T Consensus 230 ~~~~~~~~d~~gd~givG~~~~~~~~-~~~~I~~l~vs~r~~grGig~~Ll~~l~~~a~~~G~~~i~l~v~~~~~N~~A~ 308 (320)
T TIGR01686 230 EIVTVSMSDRFGDSGIIGIFVFEKKE-GNLFIDDLCMSCRALGRGVETRMLRWLFEQALDLGNHNARLYYRRTERNMPFL 308 (320)
T ss_pred CEEEEEEEecCCCCceEEEEEEEecC-CcEEEEEEEEcHhHhcCcHHHHHHHHHHHHHHHcCCCeEEEEEeeCCCchHHH
Confidence 356555543 67899999987644 67899999999999999999999999999999999999988543 4689
Q ss_pred HHHHhccCcEEc
Q 002334 874 SIWTDKFGFKKI 885 (935)
Q Consensus 874 ~~w~~kfGF~~i 885 (935)
.||.+ +||...
T Consensus 309 ~fY~~-~GF~~~ 319 (320)
T TIGR01686 309 SFYEQ-IGFEDE 319 (320)
T ss_pred HHHHH-cCCccC
Confidence 99998 999854
No 56
>PRK15130 spermidine N1-acetyltransferase; Provisional
Probab=97.91 E-value=6e-05 Score=76.11 Aligned_cols=82 Identities=17% Similarity=0.128 Sum_probs=67.0
Q ss_pred EEEEEeeCCeEEEEEEEEEeC--CeeEEEeeeEeecCccCCChhHHHHHHHHHHhh-hcCccEEEecCh---hhhHHHHH
Q 002334 804 YCAILTVNSSVVSAGILRVFG--QEVAELPLVATSKINHGKGYFQLLFACIEKLLS-FLRVKSIVLPAA---EEAESIWT 877 (935)
Q Consensus 804 Y~~VL~~~~~vVsaA~lrv~g--~~vAElplVAT~~~yRgqG~gr~L~~~IE~~L~-~lgV~~LvLpA~---~~a~~~w~ 877 (935)
+.++++.+|++||.+.+.... ...+++- +++.++|||+|+|+.|+..+.+.+. .+|+++|++... ..+..+|.
T Consensus 58 ~~~~i~~~g~~iG~~~~~~~~~~~~~~~~~-~~v~~~~~g~G~g~~l~~~l~~~~~~~~~~~rv~~~v~~~N~~s~~~ye 136 (186)
T PRK15130 58 RRFVVECDGEKAGLVELVEINHVHRRAEFQ-IIISPEYQGKGLATRAAKLAMDYGFTVLNLYKLYLIVDKENEKAIHIYR 136 (186)
T ss_pred cEEEEEECCEEEEEEEEEeecCCCCeEEEE-EEECHHHcCCCHHHHHHHHHHHHHhhcCCceEEEEEEccCCHHHHHHHH
Confidence 345567899999999886543 2467774 8999999999999999999999875 689999988643 46899999
Q ss_pred hccCcEEcCH
Q 002334 878 DKFGFKKIDP 887 (935)
Q Consensus 878 ~kfGF~~i~~ 887 (935)
+ +||+..+.
T Consensus 137 k-~GF~~~~~ 145 (186)
T PRK15130 137 K-LGFEVEGE 145 (186)
T ss_pred H-CCCEEEEE
Confidence 9 99998765
No 57
>PRK10514 putative acetyltransferase; Provisional
Probab=97.90 E-value=4.9e-05 Score=73.13 Aligned_cols=73 Identities=16% Similarity=0.114 Sum_probs=57.6
Q ss_pred eeCCeEEEEEEEEEeCCeeEEEeeeEeecCccCCChhHHHHHHHHHHhhhcCccEEEecChhhhHHHHHhccCcEEcCHH
Q 002334 809 TVNSSVVSAGILRVFGQEVAELPLVATSKINHGKGYFQLLFACIEKLLSFLRVKSIVLPAAEEAESIWTDKFGFKKIDPE 888 (935)
Q Consensus 809 ~~~~~vVsaA~lrv~g~~vAElplVAT~~~yRgqG~gr~L~~~IE~~L~~lgV~~LvLpA~~~a~~~w~~kfGF~~i~~~ 888 (935)
..++++||.+.+.- .++..++++++|||||+|++||+.+++.+.. +...+...-..+..||++ +||+..+..
T Consensus 56 ~~~~~~iG~~~~~~-----~~~~~~~v~p~~rgkGig~~Ll~~~~~~~~~--i~~~v~~~N~~a~~~yek-~Gf~~~~~~ 127 (145)
T PRK10514 56 DERDQPVGFMLLSG-----GHMEALFVDPDVRGCGVGRMLVEHALSLHPE--LTTDVNEQNEQAVGFYKK-MGFKVTGRS 127 (145)
T ss_pred ecCCcEEEEEEEec-----CcEeEEEECHHhccCCHHHHHHHHHHHhccc--cEEEeecCCHHHHHHHHH-CCCEEeccc
Confidence 46789999887642 3455799999999999999999999997643 344444555678999998 999998774
Q ss_pred H
Q 002334 889 L 889 (935)
Q Consensus 889 e 889 (935)
.
T Consensus 128 ~ 128 (145)
T PRK10514 128 E 128 (145)
T ss_pred c
Confidence 4
No 58
>PF00628 PHD: PHD-finger; InterPro: IPR019787 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the PHD (homeodomain) zinc finger domain [,], which is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in chromatin-mediated transcriptional regulation. The PHD finger motif is reminiscent of, but distinct from the C3HC4 type RING finger. The function of this domain is not yet known but in analogy with the LIM domain it could be involved in protein-protein interaction and be important for the assembly or activity of multicomponent complexes involved in transcriptional activation or repression. Alternatively, the interactions could be intra-molecular and be important in maintaining the structural integrity of the protein. In similarity to the RING finger and the LIM domain, the PHD finger is thought to bind two zinc ions. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0005515 protein binding; PDB: 3ZVY_A 2LGG_A 3SOW_A 3SOU_B 3ASL_A 3ASK_A 3ZVZ_B 3T6R_A 2LGK_A 3SOX_B ....
Probab=97.88 E-value=2.1e-06 Score=70.36 Aligned_cols=48 Identities=31% Similarity=0.958 Sum_probs=36.4
Q ss_pred ceeccCCCCCCCCCCCCceeeCCCCCCcCCCCCCCCCcCCccCCCCCCCceecCCcc
Q 002334 647 CLLCRGCDFSKSGFGPRTILLCDQCEREFHVGCLKKHKMADLRELPKGKWFCCMDCS 703 (935)
Q Consensus 647 C~iC~~~df~~sgf~~~tLL~CDqCdr~YHv~CL~p~~~~~L~evP~g~WfCc~~C~ 703 (935)
|.+|+..+ ..+.||.||.|+++||..|+.+... ....+.+.|+| +.|.
T Consensus 2 C~vC~~~~------~~~~~i~C~~C~~~~H~~C~~~~~~--~~~~~~~~w~C-~~C~ 49 (51)
T PF00628_consen 2 CPVCGQSD------DDGDMIQCDSCNRWYHQECVGPPEK--AEEIPSGDWYC-PNCR 49 (51)
T ss_dssp BTTTTSSC------TTSSEEEBSTTSCEEETTTSTSSHS--HHSHHSSSBSS-HHHH
T ss_pred CcCCCCcC------CCCCeEEcCCCChhhCcccCCCChh--hccCCCCcEEC-cCCc
Confidence 78898743 5788999999999999999988421 12334559999 6774
No 59
>PF13523 Acetyltransf_8: Acetyltransferase (GNAT) domain; PDB: 2VQY_A 2BUE_A 1V0C_A 1YK3_D 2PR8_A 2QIR_A 2PRB_A 2QML_A 2PC1_A.
Probab=97.88 E-value=8.8e-05 Score=72.37 Aligned_cols=86 Identities=15% Similarity=0.130 Sum_probs=68.6
Q ss_pred cceEEEEEeeCCeEEEEEEEEE------eCCeeEEEeeeEeecCccCCChhHHHHHHHHHHhhhc-CccEEEecChh---
Q 002334 801 GGMYCAILTVNSSVVSAGILRV------FGQEVAELPLVATSKINHGKGYFQLLFACIEKLLSFL-RVKSIVLPAAE--- 870 (935)
Q Consensus 801 ~GfY~~VL~~~~~vVsaA~lrv------~g~~vAElplVAT~~~yRgqG~gr~L~~~IE~~L~~l-gV~~LvLpA~~--- 870 (935)
.+++.+|++.||++||.+.+.- ..+..+.+-.+++.++|||||+|+.+|.++.+.+..- ++++|++....
T Consensus 46 ~~~~~~v~~~dg~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rg~G~g~~~~~~~~~~~~~~~~~~~i~~~~~~~N~ 125 (152)
T PF13523_consen 46 PGHHPYVAEDDGEPIGYFEIYWPDEDYDADDGDRGIHRLIVDPEYRGQGLGKAMLRALIEFLFEDPGVDRIVLDPHEDNT 125 (152)
T ss_dssp TTEEEEEEEETTEEEEEEEEEEGGGSS---TTEEEEEEEESTGGGTTSSHHHHHHHHHHHHHHTSTT--EEEEEEBTT-H
T ss_pred CCceEEEEEECCEEEEEEEEecccccccCCCCEEEEeeeeechhhcCCCHHHHHHHHHHHHHHhCCCCCEEEEecCcCCH
Confidence 4677888899999999887642 1345777899999999999999999999999988766 89999998765
Q ss_pred hhHHHHHhccCcEEcCH
Q 002334 871 EAESIWTDKFGFKKIDP 887 (935)
Q Consensus 871 ~a~~~w~~kfGF~~i~~ 887 (935)
-++..|++ +||+.+++
T Consensus 126 ~~~~~~~k-~GF~~~g~ 141 (152)
T PF13523_consen 126 RAIRLYEK-AGFRKVGE 141 (152)
T ss_dssp HHHHHHHH-TT-EEEEE
T ss_pred HHHHHHHH-cCCEEeeE
Confidence 47888998 99998765
No 60
>smart00249 PHD PHD zinc finger. The plant homeodomain (PHD) finger is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in epigenetics and chromatin-mediated transcriptional regulation. The PHD finger binds two zinc ions using the so-called 'cross-brace' motif and is thus structurally related to the TIGR01211 ELP3 histone acetyltransferase, ELP3 family. The Saccharomyces cerevisiae member YPL086C has been characterized in vitro as an N-terminal acetyltransferase for all four core histones. It is a component of the RNA polymerase II holoenzyme, designated Elp3p for Elongator Protein 3. Members of this family are found in eukaryotes and archaea. These proteins are part of the larger set of GNAT acetyltransferases.
Probab=97.81 E-value=6.2e-05 Score=89.16 Aligned_cols=77 Identities=16% Similarity=0.200 Sum_probs=64.9
Q ss_pred eCCeEEEEEEEEEeCCeeE-----------EEeeeEe--------ecCccCCChhHHHHHHHHHHhhhcCccEEEecChh
Q 002334 810 VNSSVVSAGILRVFGQEVA-----------ELPLVAT--------SKINHGKGYFQLLFACIEKLLSFLRVKSIVLPAAE 870 (935)
Q Consensus 810 ~~~~vVsaA~lrv~g~~vA-----------ElplVAT--------~~~yRgqG~gr~L~~~IE~~L~~lgV~~LvLpA~~ 870 (935)
.++.+||-.++|....+.. ||-..++ .++|||+|+|+.||+++|+.|++.|++.|+|.+..
T Consensus 421 ~~~~l~G~lrlr~~~~~~~~~~~~~~a~IrelhV~G~~~~~~~~~~~~~rg~GiG~~Ll~~ae~~Ar~~G~~~i~v~s~~ 500 (522)
T TIGR01211 421 KNDILIGFLRLRFPSEPAHRKEVDATALVRELHVYGSEVPIGERGDDEWQHRGYGRRLLEEAERIAAEEGSEKILVISGI 500 (522)
T ss_pred CCCeEEEEEEEecCcccccccccCCCceEEEEEEeeeeccccccCChhHhCcCHHHHHHHHHHHHHHHCCCCEEEEeeCc
Confidence 4678899998887664322 5555544 58899999999999999999999999999999999
Q ss_pred hhHHHHHhccCcEEcCH
Q 002334 871 EAESIWTDKFGFKKIDP 887 (935)
Q Consensus 871 ~a~~~w~~kfGF~~i~~ 887 (935)
.|..||.+ +||...++
T Consensus 501 ~A~~FY~k-lGf~~~g~ 516 (522)
T TIGR01211 501 GVREYYRK-LGYELDGP 516 (522)
T ss_pred hHHHHHHH-CCCEEEcc
Confidence 99999998 99998764
No 62
>COG3393 Predicted acetyltransferase [General function prediction only]
Probab=97.80 E-value=6.4e-05 Score=81.37 Aligned_cols=84 Identities=20% Similarity=0.232 Sum_probs=68.6
Q ss_pred eEEEEEeeCCeEEEEEEEEEeCCeeEEEeeeEeecCccCCChhHHHHHHHHHHhhhcC-ccEEEecCh-hhhHHHHHhcc
Q 002334 803 MYCAILTVNSSVVSAGILRVFGQEVAELPLVATSKINHGKGYFQLLFACIEKLLSFLR-VKSIVLPAA-EEAESIWTDKF 880 (935)
Q Consensus 803 fY~~VL~~~~~vVsaA~lrv~g~~vAElplVAT~~~yRgqG~gr~L~~~IE~~L~~lg-V~~LvLpA~-~~a~~~w~~kf 880 (935)
+.++.+..+|+||+.|...-.+..+|+|-.|.|.|+|||+||+.+|+.++-..+..-| ..-|+..++ +-|..+|.+ +
T Consensus 177 ~~~~f~~~d~~iVa~A~t~a~~~~~~~I~gV~T~peyR~kGyAt~lva~L~~~lL~eGk~~~L~~~~~N~~A~~iY~r-i 255 (268)
T COG3393 177 SRTYFLEGDGKIVAKAETAAENPAYAQINGVYTHPEYRGKGYATALVATLAAKLLAEGKIPCLFVNSDNPVARRIYQR-I 255 (268)
T ss_pred eeEEEEccCCcEEEeeeccccCCcceEEEEEEcCHHHccccHHHHHHHHHHHHHHhCCCeeEEEEecCCHHHHHHHHH-h
Confidence 4444456677999999999999999999999999999999999999999876655555 455666544 347889999 9
Q ss_pred CcEEcCH
Q 002334 881 GFKKIDP 887 (935)
Q Consensus 881 GF~~i~~ 887 (935)
||+.+++
T Consensus 256 GF~~~g~ 262 (268)
T COG3393 256 GFREIGE 262 (268)
T ss_pred CCeecce
Confidence 9998874
No 63
>PF13718 GNAT_acetyltr_2: GNAT acetyltransferase 2; PDB: 2ZPA_B.
Probab=97.79 E-value=0.00015 Score=76.13 Aligned_cols=87 Identities=16% Similarity=0.124 Sum_probs=63.8
Q ss_pred ecceEEEEEeeCC--eEEEEEEEEEeC-------------------------------------CeeEEEeeeEeecCcc
Q 002334 800 FGGMYCAILTVNS--SVVSAGILRVFG-------------------------------------QEVAELPLVATSKINH 840 (935)
Q Consensus 800 f~GfY~~VL~~~~--~vVsaA~lrv~g-------------------------------------~~vAElplVAT~~~yR 840 (935)
=-+...++|..++ +|++|+-+-..| -.-++|-+|||+|++|
T Consensus 24 aP~h~l~~l~~~~~p~il~~~~v~~EG~l~~~l~~~i~~g~rRp~G~LiP~~L~~~~~~~~f~~l~g~RIvRIAvhP~~q 103 (196)
T PF13718_consen 24 APNHRLFVLLQPGDPDILGVAQVALEGGLSKELIEAILSGGRRPKGHLIPQTLAQHFGDPEFAQLSGARIVRIAVHPDLQ 103 (196)
T ss_dssp -TTEEEEEEE-SS--SEEEEEEEEEEE---HHHHHHHHTTS---SS-HHHHHHHHHSS-TTGGGSEEEEEEEEEE-CCC-
T ss_pred CCcceeehhccCCCceEEEEEEEEecCCCCHHHHHHHHhCCCCCCCCCHHHHHHHHhCCHHHHhhcceeEEEEEEChhhh
Confidence 3456778888888 999999887766 2368999999999999
Q ss_pred CCChhHHHHHHHHHHh-------------------------hhcCccEEEec--ChhhhHHHHHhccCcEEcCH
Q 002334 841 GKGYFQLLFACIEKLL-------------------------SFLRVKSIVLP--AAEEAESIWTDKFGFKKIDP 887 (935)
Q Consensus 841 gqG~gr~L~~~IE~~L-------------------------~~lgV~~LvLp--A~~~a~~~w~~kfGF~~i~~ 887 (935)
++|||++|++.+++.+ +.-+|..|=.. +.+++..||.+ .||.++-=
T Consensus 104 ~~G~Gs~lL~~l~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~vDylGtSFG~t~~Ll~FW~k-~gf~pv~l 176 (196)
T PF13718_consen 104 RMGYGSRLLQQLEQYAEGKIPSLSEQDKEKLPPLLSKLSDRRPPGVDYLGTSFGATPELLKFWQK-NGFVPVYL 176 (196)
T ss_dssp SSSHHHHHHHHHHHT-----------------------------S-SEEEEEEE--HHHHHHHHC-TT-EEEEE
T ss_pred cCCHHHHHHHHHHHHHhhhcccccccccccccccccccccccccCCCEEEeccCCCHHHHHHHHH-CCcEEEEE
Confidence 9999999999999999 47788876544 67889999999 99998743
No 64
>TIGR03585 PseH pseudaminic acid biosynthesis N-acetyl transferase. Sequences in this family are members of the pfam00583 (GNAT) superfamily of acetyltransferases and are proposed to perform a N-acetylation step in the process of pseudaminic acid biosynthesis in Campylobacter species. This gene is commonly observed in apparent operons with other genes responsible for the biosynthesis of pseudaminic acid and as a component of flagellar and exopolysaccharide biosynthesis loci. Significantly, many genomes containing other components of this pathway lack this gene, indicating that some other N-acetyl transferases may be incolved and/or the step is optional, resulting in a non-acetylated pseudaminic acid variant sugar.
Probab=97.78 E-value=0.00016 Score=70.08 Aligned_cols=81 Identities=14% Similarity=0.109 Sum_probs=66.1
Q ss_pred EEEeeCCeEEEEEEEEEeC--CeeEEEeeeEeecCccCCChhHHHHHHHHHHhh-hcCccEEEec---ChhhhHHHHHhc
Q 002334 806 AILTVNSSVVSAGILRVFG--QEVAELPLVATSKINHGKGYFQLLFACIEKLLS-FLRVKSIVLP---AAEEAESIWTDK 879 (935)
Q Consensus 806 ~VL~~~~~vVsaA~lrv~g--~~vAElplVAT~~~yRgqG~gr~L~~~IE~~L~-~lgV~~LvLp---A~~~a~~~w~~k 879 (935)
+++..+|++||.+.+.... ...+++... +.+.+| +|+|+.++.++++.+. .+|+.+|++. .-..+..+|.+
T Consensus 54 ~~~~~~g~~vG~~~~~~~~~~~~~~~~g~~-~~~~~~-~G~g~~~~~~~~~~a~~~~~~~~i~~~v~~~N~~s~~~y~k- 130 (156)
T TIGR03585 54 WIVCQESRPIGVISFTDINLVHKSAFWGIY-ANPFCK-PGVGSVLEEAALEYAFEHLGLHKLSLEVLEFNNKALKLYEK- 130 (156)
T ss_pred EEEEECCEEEEEEEEEecChhhCeEEEEEE-eChhhh-cCchHHHHHHHHHHHHhhCCeeEEEEEEeccCHHHHHHHHH-
Confidence 3446789999999987665 357788765 889999 9999999999999987 5899999875 45568899999
Q ss_pred cCcEEcCHHH
Q 002334 880 FGFKKIDPEL 889 (935)
Q Consensus 880 fGF~~i~~~e 889 (935)
+||+.++...
T Consensus 131 ~Gf~~~g~~~ 140 (156)
T TIGR03585 131 FGFEREGVFR 140 (156)
T ss_pred cCCeEeeeeh
Confidence 9999887543
No 65
>KOG0383 consensus Predicted helicase [General function prediction only]
Probab=97.77 E-value=1.4e-05 Score=96.41 Aligned_cols=49 Identities=39% Similarity=0.924 Sum_probs=42.7
Q ss_pred cCCcccccccCccCCcCcccccCCCCceecccCCCcccccccCC--CCCCCCCCccccccccc
Q 002334 541 NGLGIICHCCNSEVSPSQFEAHADGGNLLPCDGCPRAFHKECAS--LSSIPQGDWYCKYCQNM 601 (935)
Q Consensus 541 ~~~~i~C~~C~~eiSpS~FE~hadgG~Ll~CD~Cp~afH~~CL~--L~~vPeg~W~Cp~C~~~ 601 (935)
..+...|.+|. ++|++++||.|+.+||..|++ +...|.++|.|+.|...
T Consensus 44 ~~~~e~c~ic~------------~~g~~l~c~tC~~s~h~~cl~~pl~~~p~~~~~c~Rc~~p 94 (696)
T KOG0383|consen 44 DAEQEACRICA------------DGGELLWCDTCPASFHASCLGPPLTPQPNGEFICPRCFCP 94 (696)
T ss_pred hhhhhhhhhhc------------CCCcEEEeccccHHHHHHccCCCCCcCCccceeeeeeccC
Confidence 45667899999 899999999999999999997 66788888999999544
No 66
>KOG1512 consensus PHD Zn-finger protein [General function prediction only]
Probab=97.76 E-value=1e-05 Score=87.20 Aligned_cols=53 Identities=32% Similarity=0.790 Sum_probs=44.8
Q ss_pred cccCCcccccccCccCCcCcccccCCCCceecccCCCcccccccCCCCCCCCCCcccc-cccc
Q 002334 539 YKNGLGIICHCCNSEVSPSQFEAHADGGNLLPCDGCPRAFHKECASLSSIPQGDWYCK-YCQN 600 (935)
Q Consensus 539 ~~~~~~i~C~~C~~eiSpS~FE~hadgG~Ll~CD~Cp~afH~~CL~L~~vPeg~W~Cp-~C~~ 600 (935)
|..-+...|.+|++... ..++++||.|+++||..|++|..+|.|.|.|- .|..
T Consensus 309 W~C~~C~lC~IC~~P~~---------E~E~~FCD~CDRG~HT~CVGL~~lP~G~WICD~~C~~ 362 (381)
T KOG1512|consen 309 WKCSSCELCRICLGPVI---------ESEHLFCDVCDRGPHTLCVGLQDLPRGEWICDMRCRE 362 (381)
T ss_pred hhhcccHhhhccCCccc---------chheeccccccCCCCccccccccccCccchhhhHHHH
Confidence 44567788999997653 56899999999999999999999999999998 4653
No 67
>PF00628 PHD: PHD-finger; InterPro: IPR019787 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the PHD (homeodomain) zinc finger domain [,], which is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in chromatin-mediated transcriptional regulation. The PHD finger motif is reminiscent of, but distinct from the C3HC4 type RING finger. The function of this domain is not yet known but in analogy with the LIM domain it could be involved in protein-protein interaction and be important for the assembly or activity of multicomponent complexes involved in transcriptional activation or repression. Alternatively, the interactions could be intra-molecular and be important in maintaining the structural integrity of the protein. In similarity to the RING finger and the LIM domain, the PHD finger is thought to bind two zinc ions. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0005515 protein binding; PDB: 3ZVY_A 2LGG_A 3SOW_A 3SOU_B 3ASL_A 3ASK_A 3ZVZ_B 3T6R_A 2LGK_A 3SOX_B ....
Probab=97.74 E-value=1.3e-05 Score=65.73 Aligned_cols=46 Identities=41% Similarity=1.174 Sum_probs=37.2
Q ss_pred cccccCccCCcCcccccCCCCceecccCCCcccccccCCCC----CCCCCCcccccccc
Q 002334 546 ICHCCNSEVSPSQFEAHADGGNLLPCDGCPRAFHKECASLS----SIPQGDWYCKYCQN 600 (935)
Q Consensus 546 ~C~~C~~eiSpS~FE~hadgG~Ll~CD~Cp~afH~~CL~L~----~vPeg~W~Cp~C~~ 600 (935)
+|.+|++. .+.++|+.||.|.+.||..|+++. ..+.+.|+|+.|..
T Consensus 1 ~C~vC~~~---------~~~~~~i~C~~C~~~~H~~C~~~~~~~~~~~~~~w~C~~C~~ 50 (51)
T PF00628_consen 1 YCPVCGQS---------DDDGDMIQCDSCNRWYHQECVGPPEKAEEIPSGDWYCPNCRP 50 (51)
T ss_dssp EBTTTTSS---------CTTSSEEEBSTTSCEEETTTSTSSHSHHSHHSSSBSSHHHHH
T ss_pred eCcCCCCc---------CCCCCeEEcCCCChhhCcccCCCChhhccCCCCcEECcCCcC
Confidence 47888861 168899999999999999999864 34556999999974
No 68
>KOG1244 consensus Predicted transcription factor Requiem/NEURO-D4 [Transcription]
Probab=97.71 E-value=1.2e-05 Score=86.39 Aligned_cols=51 Identities=31% Similarity=0.813 Sum_probs=41.6
Q ss_pred CcccccccCccCCcCcccccCCCCceecccCCCcccccccCC--CCCCCCCCcccccccccc
Q 002334 543 LGIICHCCNSEVSPSQFEAHADGGNLLPCDGCPRAFHKECAS--LSSIPQGDWYCKYCQNMF 602 (935)
Q Consensus 543 ~~i~C~~C~~eiSpS~FE~hadgG~Ll~CD~Cp~afH~~CL~--L~~vPeg~W~Cp~C~~~~ 602 (935)
+.-.|++|+... ..++||+||.|+++||++||. +.+.|+|.|.|..|...+
T Consensus 280 eck~csicgtse---------nddqllfcddcdrgyhmyclsppm~eppegswsc~KOG~~~ 332 (336)
T KOG1244|consen 280 ECKYCSICGTSE---------NDDQLLFCDDCDRGYHMYCLSPPMVEPPEGSWSCHLCLEEL 332 (336)
T ss_pred ecceeccccCcC---------CCceeEeecccCCceeeEecCCCcCCCCCCchhHHHHHHHH
Confidence 455677787522 467899999999999999996 667899999999997554
No 69
>PRK10809 ribosomal-protein-S5-alanine N-acetyltransferase; Provisional
Probab=97.60 E-value=0.00029 Score=71.73 Aligned_cols=83 Identities=8% Similarity=0.125 Sum_probs=65.7
Q ss_pred eEEEEEeeCCeEEEEEEEEEeCC---eeEEEeeeEeecCccCCChhHHHHHHHHHHhhh-cCccEEEecChh---hhHHH
Q 002334 803 MYCAILTVNSSVVSAGILRVFGQ---EVAELPLVATSKINHGKGYFQLLFACIEKLLSF-LRVKSIVLPAAE---EAESI 875 (935)
Q Consensus 803 fY~~VL~~~~~vVsaA~lrv~g~---~vAElplVAT~~~yRgqG~gr~L~~~IE~~L~~-lgV~~LvLpA~~---~a~~~ 875 (935)
.|.+++..++++||.+.|+.... ..+||- +.+.++|||||||+.++.++.+.+.. +|+.+|++.... -+..+
T Consensus 77 ~~~i~~~~~~~~iG~i~l~~~~~~~~~~~eig-~~i~~~~~G~G~~~ea~~~ll~~~~~~l~l~~i~~~v~~~N~~S~~l 155 (194)
T PRK10809 77 YFALLDPDEKEIIGVANFSNVVRGSFHACYLG-YSLGQKWQGQGLMFEALQAAIRYMQRQQHMHRIMANYMPHNKRSGDL 155 (194)
T ss_pred EEEEEECCCCeEEEEEEEEeecCCCeeeEEEE-EEECHHHcCCCHHHHHHHHHHHHHHhcCCceEEEEEeeCCCHHHHHH
Confidence 44444445789999999876542 346655 46899999999999999999999876 899999988755 46789
Q ss_pred HHhccCcEEcCH
Q 002334 876 WTDKFGFKKIDP 887 (935)
Q Consensus 876 w~~kfGF~~i~~ 887 (935)
+++ +||+..+.
T Consensus 156 ~ek-~Gf~~~g~ 166 (194)
T PRK10809 156 LAR-LGFEKEGY 166 (194)
T ss_pred HHH-CCCcEEee
Confidence 998 99997664
No 70
>smart00249 PHD PHD zinc finger. The plant homeodomain (PHD) finger is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in epigenetics and chromatin-mediated transcriptional regulation. The PHD finger binds two zinc ions using the so-called 'cross-brace' motif and is thus structurally related to the PF13302 Acetyltransf_3: Acetyltransferase (GNAT) domain; PDB: 3TTH_C 3JUW_A 2ZXV_A 2Z0Z_A 2VI7_B 3EG7_F 1YRE_C 3IGR_B 3FBU_A 2FCK_A ....
Probab=97.53 E-value=0.00068 Score=64.35 Aligned_cols=80 Identities=16% Similarity=0.210 Sum_probs=62.4
Q ss_pred ceEEEEEee--CCeEEEEEEEEEe--CCeeEEEeeeEeecCccCCChhHHHHHHHHHHh-hhcCccEEEecChhh---hH
Q 002334 802 GMYCAILTV--NSSVVSAGILRVF--GQEVAELPLVATSKINHGKGYFQLLFACIEKLL-SFLRVKSIVLPAAEE---AE 873 (935)
Q Consensus 802 GfY~~VL~~--~~~vVsaA~lrv~--g~~vAElplVAT~~~yRgqG~gr~L~~~IE~~L-~~lgV~~LvLpA~~~---a~ 873 (935)
|+|.+++.. ++++||...++.. ....+||. +.+.++|||+|+|+.++..+.+.+ ..+|+.+|.+..... +.
T Consensus 55 ~~~~~~i~~~~~~~~iG~i~~~~~~~~~~~~eig-~~i~~~~~g~G~~~~~~~~~~~~~~~~~~~~~i~a~~~~~N~~s~ 133 (142)
T PF13302_consen 55 GYYYFAIEDKDDGEIIGFIGLYNIDKNNNWAEIG-YWIGPDYRGKGYGTEALKLLLDWAFEELGLHRIIATVMADNEASR 133 (142)
T ss_dssp TEEEEEEEETTTTEEEEEEEEEEEETTTTEEEEE-EEEEGGGTTSSHHHHHHHHHHHHHHHTSTSSEEEEEEETT-HHHH
T ss_pred cceEEEEEeccCCceEEEeeeeecccCCCccccc-cchhHHHHhhhHHHHHHHHHHHHHHhcCCcEEEEEEECcCCHHHH
Confidence 355555554 4579999998544 46899999 669999999999999999999999 799999998776553 55
Q ss_pred HHHHhccCcE
Q 002334 874 SIWTDKFGFK 883 (935)
Q Consensus 874 ~~w~~kfGF~ 883 (935)
.++.+ +||+
T Consensus 134 ~~~~k-~GF~ 142 (142)
T PF13302_consen 134 RLLEK-LGFE 142 (142)
T ss_dssp HHHHH-TT-E
T ss_pred HHHHH-cCCC
Confidence 67776 9995
No 72
>COG3153 Predicted acetyltransferase [General function prediction only]
Probab=97.51 E-value=0.00033 Score=72.13 Aligned_cols=138 Identities=14% Similarity=0.132 Sum_probs=93.9
Q ss_pred hHHHHHHHHHhhhhcCCCcccCCCCCCccccccccccCCCceecceEEEEEeeCCeEEEEEEEEEe--C---CeeEEEee
Q 002334 758 TRLLLSQAVAIFHDCFDPIVDSISGRDLIPSMVYGRNLRGQEFGGMYCAILTVNSSVVSAGILRVF--G---QEVAELPL 832 (935)
Q Consensus 758 ~~skLa~AL~If~EcF~Pivd~rSgrDLIp~MVygr~~~~~~f~GfY~~VL~~~~~vVsaA~lrv~--g---~~vAElpl 832 (935)
+..-....-+|.++.|.|-.. .+++..+- ...+.++.=. +|-..+|++|+...+--. | ..+.=|--
T Consensus 10 ~~~d~~~i~~~~~~aF~~~~e----~~~v~~lR---~~~~~~~~Ls--lVA~d~g~vvG~Il~s~v~~~g~~~~~~~LaP 80 (171)
T COG3153 10 TPADIPAIEALTREAFGPGRE----AKLVDKLR---EGGRPDLTLS--LVAEDDGEVVGHILFSPVTVGGEELGWLGLAP 80 (171)
T ss_pred ChhhHHHHHHHHHHHhhcchH----HHHHHHHH---hcCCccccee--EEEeeCCEEEEEEEEeEEEecCcccceEEEEe
Confidence 334445666777888864322 23333222 2222232222 344677999997766422 2 14566778
Q ss_pred eEeecCccCCChhHHHHHHHHHHhhhcCccEEEecChhhhHHHHHhccCcEEcCHHHHHHHHhhCCceeeeCCCeeeeec
Q 002334 833 VATSKINHGKGYFQLLFACIEKLLSFLRVKSIVLPAAEEAESIWTDKFGFKKIDPELLSIYRKRCSQLVTFKGTSMLQKR 912 (935)
Q Consensus 833 VAT~~~yRgqG~gr~L~~~IE~~L~~lgV~~LvLpA~~~a~~~w~~kfGF~~i~~~el~~~~~~~~~l~~F~gT~mLqK~ 912 (935)
+||+++|||||+|++||...++.|+.+|...+++.-. -.+|.+ |||+......+.- +.. +|.+.+|-+.
T Consensus 81 LaV~p~~qg~GIG~~Lvr~~le~a~~~G~~~v~vlGd---p~YY~r-fGF~~~~~~~l~~------p~~-~~~~~fl~~~ 149 (171)
T COG3153 81 LAVDPEYQGQGIGSALVREGLEALRLAGASAVVVLGD---PTYYSR-FGFEPAAGAKLYA------PGP-VPDERFLALE 149 (171)
T ss_pred EEEchhhcCCcHHHHHHHHHHHHHHHCCCCEEEEecC---cccccc-cCcEEcccccccc------CCC-CCCceEEEEE
Confidence 9999999999999999999999999999999998776 457744 9999988766421 223 6788888887
Q ss_pred ccC
Q 002334 913 VPA 915 (935)
Q Consensus 913 l~~ 915 (935)
|..
T Consensus 150 L~~ 152 (171)
T COG3153 150 LGD 152 (171)
T ss_pred ccC
Confidence 765
No 73
>PRK10151 ribosomal-protein-L7/L12-serine acetyltransferase; Provisional
Probab=97.49 E-value=0.00069 Score=68.00 Aligned_cols=80 Identities=8% Similarity=0.081 Sum_probs=63.7
Q ss_pred EEeeCCeEEEEEEEEEeCC--eeEEEeeeEeecCccCCChhHHHHHHHHHHhh-hcCccEEEecChh---hhHHHHHhcc
Q 002334 807 ILTVNSSVVSAGILRVFGQ--EVAELPLVATSKINHGKGYFQLLFACIEKLLS-FLRVKSIVLPAAE---EAESIWTDKF 880 (935)
Q Consensus 807 VL~~~~~vVsaA~lrv~g~--~vAElplVAT~~~yRgqG~gr~L~~~IE~~L~-~lgV~~LvLpA~~---~a~~~w~~kf 880 (935)
++..+|++||.+.++.... ..+|+-. .+.++|||||||+.++.++.+.+. .+|+++|.+.... .+..++++ +
T Consensus 71 ~i~~~~~~iG~~~l~~~~~~~~~~~ig~-~i~~~~~g~G~~tea~~~l~~~~~~~~~~~ri~~~v~~~N~~S~~v~ek-~ 148 (179)
T PRK10151 71 MIFKEDELIGVLSFNRIEPLNKTAYIGY-WLDESHQGQGIISQALQALIHHYAQSGELRRFVIKCRVDNPASNQVALR-N 148 (179)
T ss_pred EEEECCEEEEEEEEEeeccCCCceEEEE-EEChhhcCCcHHHHHHHHHHHHHHhhCCccEEEEEEcCCCHHHHHHHHH-C
Confidence 3356899999999876543 5688875 689999999999999999999876 5789998876544 36778887 9
Q ss_pred CcEEcCHH
Q 002334 881 GFKKIDPE 888 (935)
Q Consensus 881 GF~~i~~~ 888 (935)
||+..+..
T Consensus 149 Gf~~~g~~ 156 (179)
T PRK10151 149 GFTLEGCL 156 (179)
T ss_pred CCEEEeEe
Confidence 99987653
No 74
>KOG3397 consensus Acetyltransferases [General function prediction only]
Probab=97.48 E-value=0.00018 Score=73.56 Aligned_cols=77 Identities=19% Similarity=0.299 Sum_probs=62.9
Q ss_pred CCeEEEEEEEEEeC--CeeEEEeeeEeecCccCCChhHHHHHHHHHHhhhcCccEEEecChhhhHHHHHhccCcEEcCHH
Q 002334 811 NSSVVSAGILRVFG--QEVAELPLVATSKINHGKGYFQLLFACIEKLLSFLRVKSIVLPAAEEAESIWTDKFGFKKIDPE 888 (935)
Q Consensus 811 ~~~vVsaA~lrv~g--~~vAElplVAT~~~yRgqG~gr~L~~~IE~~L~~lgV~~LvLpA~~~a~~~w~~kfGF~~i~~~ 888 (935)
+.+||+-++|--.- +..--+-.|.|...+||||+|+.||+..|..++..|++.+.|.+.++ ..||++ +||+.-+.-
T Consensus 65 ~~~VigH~rLS~i~n~~~al~VEsVVV~k~~RG~GFGk~lMk~~E~~~R~~gf~~~yLsT~DQ-~~FYe~-lGYe~c~Pi 142 (225)
T KOG3397|consen 65 NDEVLGHSRLSHLPNRDHALWVESVVVKKDQRGLGFGKFLMKSTEKWMREKGFNEAYLSTDDQ-CRFYES-LGYEKCDPI 142 (225)
T ss_pred ccceeeeeccccCCCCCceeEEEEEEEehhhccccHHHHHHHHHHHHHHHhhhhheeeecccc-hhhhhh-hcccccCce
Confidence 35677766653222 24667889999999999999999999999999999999999998755 679999 999977664
Q ss_pred H
Q 002334 889 L 889 (935)
Q Consensus 889 e 889 (935)
+
T Consensus 143 ~ 143 (225)
T KOG3397|consen 143 V 143 (225)
T ss_pred e
Confidence 3
No 75
>KOG1973 consensus Chromatin remodeling protein, contains PHD Zn-finger [Chromatin structure and dynamics]
Probab=97.39 E-value=7.6e-05 Score=81.87 Aligned_cols=49 Identities=35% Similarity=0.929 Sum_probs=41.0
Q ss_pred CCcccccccCccCCcCcccccCCCCceecccC--CC-cccccccCCCCCCCCCCccccccccc
Q 002334 542 GLGIICHCCNSEVSPSQFEAHADGGNLLPCDG--CP-RAFHKECASLSSIPQGDWYCKYCQNM 601 (935)
Q Consensus 542 ~~~i~C~~C~~eiSpS~FE~hadgG~Ll~CD~--Cp-~afH~~CL~L~~vPeg~W~Cp~C~~~ 601 (935)
++-.+|.|... ..|+|+-||. |+ .=||..|++|..-|.|.|||+.|+..
T Consensus 217 ~e~~yC~Cnqv-----------syg~Mi~CDn~~C~~eWFH~~CVGL~~~PkgkWyC~~C~~~ 268 (274)
T KOG1973|consen 217 DEPTYCICNQV-----------SYGKMIGCDNPGCPIEWFHFTCVGLKTKPKGKWYCPRCKAE 268 (274)
T ss_pred CCCEEEEeccc-----------ccccccccCCCCCCcceEEEeccccccCCCCcccchhhhhh
Confidence 35567877642 5899999997 99 56999999999999999999999853
No 76
>COG5034 TNG2 Chromatin remodeling protein, contains PhD zinc finger [Chromatin structure and dynamics]
Probab=97.32 E-value=0.00011 Score=78.81 Aligned_cols=49 Identities=39% Similarity=1.051 Sum_probs=40.8
Q ss_pred cCCcccccccCccCCcCcccccCCCCceeccc--CCCcc-cccccCCCCCCCCCCcccccccc
Q 002334 541 NGLGIICHCCNSEVSPSQFEAHADGGNLLPCD--GCPRA-FHKECASLSSIPQGDWYCKYCQN 600 (935)
Q Consensus 541 ~~~~i~C~~C~~eiSpS~FE~hadgG~Ll~CD--~Cp~a-fH~~CL~L~~vPeg~W~Cp~C~~ 600 (935)
.++..+|.|=+ . ..|+|+-|| .|.+- ||+.|++|...|.|.|||+.|+.
T Consensus 218 e~e~lYCfCqq-v----------SyGqMVaCDn~nCkrEWFH~~CVGLk~pPKG~WYC~eCk~ 269 (271)
T COG5034 218 EGEELYCFCQQ-V----------SYGQMVACDNANCKREWFHLECVGLKEPPKGKWYCPECKK 269 (271)
T ss_pred cCceeEEEecc-c----------ccccceecCCCCCchhheeccccccCCCCCCcEeCHHhHh
Confidence 45667786433 2 479999999 59996 99999999999999999999974
No 77
>COG5034 TNG2 Chromatin remodeling protein, contains PhD zinc finger [Chromatin structure and dynamics]
Probab=97.31 E-value=9.6e-05 Score=79.18 Aligned_cols=49 Identities=41% Similarity=1.055 Sum_probs=39.5
Q ss_pred cccCCcceeccCCCCCCCCCCCCceeeCC--CCCC-cCCCCCCCCCcCCccCCCCCCCceecCCccc
Q 002334 641 EAELSGCLLCRGCDFSKSGFGPRTILLCD--QCER-EFHVGCLKKHKMADLRELPKGKWFCCMDCSR 704 (935)
Q Consensus 641 e~e~~~C~iC~~~df~~sgf~~~tLL~CD--qCdr-~YHv~CL~p~~~~~L~evP~g~WfCc~~C~~ 704 (935)
+++..+|+ |.... -+.|+-|| .|.+ |||..|+ .|++.|+|.||| ++|+.
T Consensus 218 e~e~lYCf-CqqvS-------yGqMVaCDn~nCkrEWFH~~CV------GLk~pPKG~WYC-~eCk~ 269 (271)
T COG5034 218 EGEELYCF-CQQVS-------YGQMVACDNANCKREWFHLECV------GLKEPPKGKWYC-PECKK 269 (271)
T ss_pred cCceeEEE-ecccc-------cccceecCCCCCchhheecccc------ccCCCCCCcEeC-HHhHh
Confidence 34445787 88763 46899999 6885 7999999 689999999999 89964
No 78
>KOG1473 consensus Nucleosome remodeling factor, subunit NURF301/BPTF [Chromatin structure and dynamics; Transcription]
Probab=97.31 E-value=4.5e-05 Score=93.86 Aligned_cols=129 Identities=25% Similarity=0.394 Sum_probs=82.9
Q ss_pred CCcccccccCccCCcCcccccCCCCceecccCCCcccccccCC--CCCCCCCCccccccccccccccccccccccccccc
Q 002334 542 GLGIICHCCNSEVSPSQFEAHADGGNLLPCDGCPRAFHKECAS--LSSIPQGDWYCKYCQNMFERKRFLQHDANAVEAGR 619 (935)
Q Consensus 542 ~~~i~C~~C~~eiSpS~FE~hadgG~Ll~CD~Cp~afH~~CL~--L~~vPeg~W~Cp~C~~~~~~ek~la~n~naia~gr 619 (935)
.-+++|..|. |.|.++||..||+.||+.|+. .-.+|+..|.|--|.. ++. |...
T Consensus 342 ~~ddhcrf~~------------d~~~~lc~Et~prvvhlEcv~hP~~~~~s~~~e~evc~~--hkv-------ngvv--- 397 (1414)
T KOG1473|consen 342 EYDDHCRFCH------------DLGDLLCCETCPRVVHLECVFHPRFAVPSAFWECEVCNI--HKV-------NGVV--- 397 (1414)
T ss_pred eecccccccC------------cccceeecccCCceEEeeecCCccccCCCccchhhhhhh--hcc-------Cccc---
Confidence 3468899999 899999999999999999996 5678999999999973 111 1110
Q ss_pred cccccchh-hhhhhhhhhhc--------cccccCCcceeccCCCCCCCCCCCCceeeCCC-CCCcCCC-CCCCCCcCCcc
Q 002334 620 VSGVDSVE-QITKRCIRIVK--------NLEAELSGCLLCRGCDFSKSGFGPRTILLCDQ-CEREFHV-GCLKKHKMADL 688 (935)
Q Consensus 620 ~~Gvd~ie-qi~~R~iR~vk--------d~e~e~~~C~iC~~~df~~sgf~~~tLL~CDq-Cdr~YHv-~CL~p~~~~~L 688 (935)
.++-+.+ .+. .+|... +......-|.+|+. +++++-|+. |.+.||. .||+..- --
T Consensus 398 -d~vl~~~K~~~--~iR~~~iG~dr~gr~ywfi~rrl~Ie~~---------det~l~yysT~pqly~ll~cLd~~~--~e 463 (1414)
T KOG1473|consen 398 -DCVLPPSKNVD--SIRHTPIGRDRYGRKYWFISRRLRIEGM---------DETLLWYYSTCPQLYHLLRCLDRTY--VE 463 (1414)
T ss_pred -ccccChhhccc--ceeccCCCcCccccchhceeeeeEEecC---------CCcEEEEecCcHHHHHHHHHhchHH--HH
Confidence 0111000 000 011100 01111234999984 468899997 9999999 9997421 11
Q ss_pred CCCCCCCceecCCccchhHHH
Q 002334 689 RELPKGKWFCCMDCSRINSVL 709 (935)
Q Consensus 689 ~evP~g~WfCc~~C~~i~~~L 709 (935)
..++.+-|+| .+|-.-+..|
T Consensus 464 ~~L~d~i~~~-~ee~~rqM~l 483 (1414)
T KOG1473|consen 464 MYLCDGIWER-REEIIRQMGL 483 (1414)
T ss_pred Hhhccchhhh-HHHHHHhccc
Confidence 3568899999 7885433333
No 79
>KOG1973 consensus Chromatin remodeling protein, contains PHD Zn-finger [Chromatin structure and dynamics]
Probab=97.30 E-value=8.4e-05 Score=81.55 Aligned_cols=36 Identities=39% Similarity=1.022 Sum_probs=31.6
Q ss_pred CCceeeCCC--CC-CcCCCCCCCCCcCCccCCCCCCCceecCCccc
Q 002334 662 PRTILLCDQ--CE-REFHVGCLKKHKMADLRELPKGKWFCCMDCSR 704 (935)
Q Consensus 662 ~~tLL~CDq--Cd-r~YHv~CL~p~~~~~L~evP~g~WfCc~~C~~ 704 (935)
-+.|+.||. |+ .|||..|+ .|+..|.|+||| +.|..
T Consensus 229 yg~Mi~CDn~~C~~eWFH~~CV------GL~~~PkgkWyC-~~C~~ 267 (274)
T KOG1973|consen 229 YGKMIGCDNPGCPIEWFHFTCV------GLKTKPKGKWYC-PRCKA 267 (274)
T ss_pred cccccccCCCCCCcceEEEecc------ccccCCCCcccc-hhhhh
Confidence 468999997 99 99999999 578889999999 58853
No 80
>COG1247 Sortase and related acyltransferases [Cell envelope biogenesis, outer membrane]
Probab=97.29 E-value=0.0015 Score=67.29 Aligned_cols=115 Identities=16% Similarity=0.179 Sum_probs=83.0
Q ss_pred CCCceecceEEEEEeeC-CeEEEEEEEEEeCC-----eeEEEeeeEeecCccCCChhHHHHHHHHHHhhhcCccEEEec-
Q 002334 795 LRGQEFGGMYCAILTVN-SSVVSAGILRVFGQ-----EVAELPLVATSKINHGKGYFQLLFACIEKLLSFLRVKSIVLP- 867 (935)
Q Consensus 795 ~~~~~f~GfY~~VL~~~-~~vVsaA~lrv~g~-----~vAElplVAT~~~yRgqG~gr~L~~~IE~~L~~lgV~~LvLp- 867 (935)
|....=.|||.+|++.+ |++++=|.+-.|.. .++|. .|=+++++||+|+|++|+.++.+.+..+|++.++-.
T Consensus 44 ~~~~~~~g~p~~V~~~~~g~v~G~a~~~~fr~r~ay~~tve~-SiYv~~~~~g~GiG~~Ll~~Li~~~~~~g~~~lva~I 122 (169)
T COG1247 44 FSGRTRDGYPVVVAEEEDGKVLGYASAGPFRERPAYRHTVEL-SIYLDPAARGKGLGKKLLQALITEARALGVRELVAGI 122 (169)
T ss_pred HHhcccCCceEEEEEcCCCeEEEEEEeeeccCccccceEEEE-EEEECcccccccHHHHHHHHHHHHHHhCCeEEEEEEE
Confidence 33444457999998866 99999998877763 35554 456899999999999999999999999999887643
Q ss_pred -ChhhhHHHHHhccCcEEcCHHHHHHHHhhCCceeeeCCCeeeeecccC
Q 002334 868 -AAEEAESIWTDKFGFKKIDPELLSIYRKRCSQLVTFKGTSMLQKRVPA 915 (935)
Q Consensus 868 -A~~~a~~~w~~kfGF~~i~~~el~~~~~~~~~l~~F~gT~mLqK~l~~ 915 (935)
+...|.--...+|||...+.....- ...-.+-.+.+||+.|..
T Consensus 123 ~~~n~aSi~lh~~~GF~~~G~~~~vg-----~k~g~wld~~~~~~~l~~ 166 (169)
T COG1247 123 ESDNLASIALHEKLGFEEVGTFPEVG-----DKFGRWLDLVLMQLLLEE 166 (169)
T ss_pred cCCCcHhHHHHHHCCCEEeccccccc-----cccceEEeeeeeehhhcc
Confidence 2223433444559999998844321 133456677888887754
No 81
>KOG4443 consensus Putative transcription factor HALR/MLL3, involved in embryonic development [General function prediction only]
Probab=97.22 E-value=0.00013 Score=86.49 Aligned_cols=140 Identities=24% Similarity=0.476 Sum_probs=84.2
Q ss_pred eccccccCCcccccccCccCCcCcccccCCCCceecccCCCcccccccCC--CCCCCCCCcccccccccccccccccccc
Q 002334 535 LLEGYKNGLGIICHCCNSEVSPSQFEAHADGGNLLPCDGCPRAFHKECAS--LSSIPQGDWYCKYCQNMFERKRFLQHDA 612 (935)
Q Consensus 535 l~~G~~~~~~i~C~~C~~eiSpS~FE~hadgG~Ll~CD~Cp~afH~~CL~--L~~vPeg~W~Cp~C~~~~~~ek~la~n~ 612 (935)
+..||-....-+|..|+.. .|...+++|+.|+-+||-+|.. ...+|.|.|+|+.|...-+....++...
T Consensus 59 l~~gWrC~~crvCe~c~~~---------gD~~kf~~Ck~cDvsyh~yc~~P~~~~v~sg~~~ckk~~~c~qc~~~lpg~s 129 (694)
T KOG4443|consen 59 LSGGWRCPSCRVCEACGTT---------GDPKKFLLCKRCDVSYHCYCQKPPNDKVPSGPWLCKKCTRCRQCDSTLPGLS 129 (694)
T ss_pred hcCCcccCCceeeeecccc---------CCcccccccccccccccccccCCccccccCcccccHHHHhhhhccccccccc
Confidence 3456666777788888731 1678999999999999999996 6789999999999976544333222111
Q ss_pred ccccccccccccchhhhhhhhhhhhccccccCCcceeccCCCCCCCCCCCCceeeCCCCCCcCCCCCCCCCcCCccCCCC
Q 002334 613 NAVEAGRVSGVDSVEQITKRCIRIVKNLEAELSGCLLCRGCDFSKSGFGPRTILLCDQCEREFHVGCLKKHKMADLRELP 692 (935)
Q Consensus 613 naia~gr~~Gvd~ieqi~~R~iR~vkd~e~e~~~C~iC~~~df~~sgf~~~tLL~CDqCdr~YHv~CL~p~~~~~L~evP 692 (935)
. ++.+-. ..| ........|.+|.... ... ..-.++.|++|.+|-|-.|-.-..+.-+...-
T Consensus 130 ~----------~~~~~~-~~~-----~~c~s~~~cPvc~~~Y--~~~-e~~~~~~c~~c~rwsh~~c~~~sdd~~~q~~v 190 (694)
T KOG4443|consen 130 L----------DLQEGY-LQC-----APCASLSYCPVCLIVY--QDS-ESLPMVCCSICQRWSHGGCDGISDDKYMQAQV 190 (694)
T ss_pred h----------hhhccC-ccc-----ccccccccCchHHHhh--hhc-cchhhHHHHHhcccccCCCCccchHHHHHHhh
Confidence 1 110000 000 0111234588886532 111 23345899999999999998654321111111
Q ss_pred CCCceecCCcc
Q 002334 693 KGKWFCCMDCS 703 (935)
Q Consensus 693 ~g~WfCc~~C~ 703 (935)
.-.+.| ..|.
T Consensus 191 D~~~~C-S~CR 200 (694)
T KOG4443|consen 191 DLQYKC-STCR 200 (694)
T ss_pred hhhccc-ceee
Confidence 124667 7886
No 82
>KOG0957 consensus PHD finger protein [General function prediction only]
Probab=97.08 E-value=0.00021 Score=82.09 Aligned_cols=128 Identities=28% Similarity=0.581 Sum_probs=75.0
Q ss_pred cccccCccCCcCcccccCCCCceecccCCCcccccccCCCC---CCCC-------CCccccccccccc-ccccccccccc
Q 002334 546 ICHCCNSEVSPSQFEAHADGGNLLPCDGCPRAFHKECASLS---SIPQ-------GDWYCKYCQNMFE-RKRFLQHDANA 614 (935)
Q Consensus 546 ~C~~C~~eiSpS~FE~hadgG~Ll~CD~Cp~afH~~CL~L~---~vPe-------g~W~Cp~C~~~~~-~ek~la~n~na 614 (935)
+|.+|...-+. |-|+++-||.|+...|..|++.. .||. ..|||--|+..+. +.--+.+|...
T Consensus 121 iCcVClg~rs~-------da~ei~qCd~CGi~VHEgCYGv~dn~si~s~~s~~stepWfCeaC~~Gvs~P~CElCPn~~G 193 (707)
T KOG0957|consen 121 ICCVCLGQRSV-------DAGEILQCDKCGINVHEGCYGVLDNVSIPSGSSDCSTEPWFCEACLYGVSLPHCELCPNRFG 193 (707)
T ss_pred EEEEeecCccc-------cccceeeccccCceecccccccccccccCCCCccCCCCchhhhhHhcCCCCCccccCCCcCC
Confidence 68888764443 78999999999999999999832 3443 3599999986532 11111122111
Q ss_pred ccc-------------cccccccchhhhhhhhhhhhcccc---ccCCcceeccCCCCCCCCCCCCceeeCC--CCCCcCC
Q 002334 615 VEA-------------GRVSGVDSVEQITKRCIRIVKNLE---AELSGCLLCRGCDFSKSGFGPRTILLCD--QCEREFH 676 (935)
Q Consensus 615 ia~-------------gr~~Gvd~ieqi~~R~iR~vkd~e---~e~~~C~iC~~~df~~sgf~~~tLL~CD--qCdr~YH 676 (935)
+.. =...|+. ..++.+++.-.+.+++ +-...|..|...-|.+.| ..+.|| .|..+||
T Consensus 194 ifKetDigrWvH~iCALYvpGVa-fg~~~~l~~Vtl~em~ysk~Gak~Cs~Ced~~fARtG----vci~CdaGMCk~YfH 268 (707)
T KOG0957|consen 194 IFKETDIGRWVHAICALYVPGVA-FGQTHTLCGVTLEEMDYSKFGAKTCSACEDKIFARTG----VCIRCDAGMCKEYFH 268 (707)
T ss_pred cccccchhhHHHHHHHhhcCccc-cccccccccccHHHhhhhhhccchhccccchhhhhcc----eeeeccchhhhhhhh
Confidence 110 0111111 0111111111112222 122359999988776654 568888 7999999
Q ss_pred CCCCCCCcC
Q 002334 677 VGCLKKHKM 685 (935)
Q Consensus 677 v~CL~p~~~ 685 (935)
+.|.+-.|+
T Consensus 269 VTCAQk~Gl 277 (707)
T KOG0957|consen 269 VTCAQKLGL 277 (707)
T ss_pred hhHHhhhcc
Confidence 999987653
No 83
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=97.07 E-value=0.00019 Score=85.78 Aligned_cols=47 Identities=34% Similarity=0.917 Sum_probs=39.1
Q ss_pred cccccccCccCCcCcccccCCCCceecccCCCcc-cccccCC--CCCCCCCCccccccc
Q 002334 544 GIICHCCNSEVSPSQFEAHADGGNLLPCDGCPRA-FHKECAS--LSSIPQGDWYCKYCQ 599 (935)
Q Consensus 544 ~i~C~~C~~eiSpS~FE~hadgG~Ll~CD~Cp~a-fH~~CL~--L~~vPeg~W~Cp~C~ 599 (935)
...|.+|... ...+-||+||+|..+ ||.+||+ |.++|-+.|||++|.
T Consensus 215 ~~~C~IC~~~---------DpEdVLLLCDsCN~~~YH~YCLDPdl~eiP~~eWYC~NC~ 264 (1134)
T KOG0825|consen 215 EVKCDICTVH---------DPEDVLLLCDSCNKVYYHVYCLDPDLSESPVNEWYCTNCS 264 (1134)
T ss_pred cccceeeccC---------ChHHhheeecccccceeeccccCcccccccccceecCcch
Confidence 4568889842 235678999999999 9999997 567999999999995
No 84
>KOG0957 consensus PHD finger protein [General function prediction only]
Probab=96.82 E-value=0.00048 Score=79.25 Aligned_cols=58 Identities=29% Similarity=0.803 Sum_probs=44.5
Q ss_pred CcceeccCCCCCCCCCCCCceeeCCCCCCcCCCCCCCCCcCCccCCCCCC----CceecCCc--cchhHHHHHhh
Q 002334 645 SGCLLCRGCDFSKSGFGPRTILLCDQCEREFHVGCLKKHKMADLRELPKG----KWFCCMDC--SRINSVLQNLL 713 (935)
Q Consensus 645 ~~C~iC~~~df~~sgf~~~tLL~CDqCdr~YHv~CL~p~~~~~L~evP~g----~WfCc~~C--~~i~~~LqkLv 713 (935)
-.|.+|+++. +.-.+++||.|...||++||.| ||+.+|+. .|.| ..| .......+.+.
T Consensus 545 ysCgiCkks~------dQHll~~CDtC~lhYHlGCL~P----PLTR~Pkk~kn~gWqC-sECdk~esSD~e~ei~ 608 (707)
T KOG0957|consen 545 YSCGICKKST------DQHLLTQCDTCHLHYHLGCLSP----PLTRLPKKNKNFGWQC-SECDKNESSDSEQEII 608 (707)
T ss_pred eeeeeeccch------hhHHHhhcchhhceeeccccCC----ccccCcccccCcceee-cccccccCcchhhhhc
Confidence 4599999863 4556799999999999999998 78888864 6999 899 34444444443
No 85
>KOG3216 consensus Diamine acetyltransferase [Amino acid transport and metabolism]
Probab=96.73 E-value=0.018 Score=58.31 Aligned_cols=124 Identities=16% Similarity=0.115 Sum_probs=91.9
Q ss_pred hhhHHHHHHHHHhhhhcCCCcccCCCCCCccccccccccCCCceecceEEEEEee-CCeEEEEEEEEEeC-----CeeEE
Q 002334 756 PETRLLLSQAVAIFHDCFDPIVDSISGRDLIPSMVYGRNLRGQEFGGMYCAILTV-NSSVVSAGILRVFG-----QEVAE 829 (935)
Q Consensus 756 ~e~~skLa~AL~If~EcF~Pivd~rSgrDLIp~MVygr~~~~~~f~GfY~~VL~~-~~~vVsaA~lrv~g-----~~vAE 829 (935)
.+.-.+|-.-++.|.++=+|.+- |..+|-.+- |..-.|.-.+.+.++. +.++||-|.+..+= .+.--
T Consensus 14 ~~~i~rLikela~Fek~~~~v~~--te~~l~~~~-----F~d~~~~~~~v~~ie~~~~~~aGf~~yf~~ystW~~k~~iY 86 (163)
T KOG3216|consen 14 CEDILRLIKELAEFEKLEDQVEA--TEENLARDG-----FIDPPFKHWLVAAIETSGEVVAGFALYFNNYSTWLGKQGIY 86 (163)
T ss_pred HHHHHHHHHHHHHHHHhccchhh--chhhhhhhh-----ccCCCccEEEEEEEecCCCceeEEeeeecccccccccceEE
Confidence 34455667778888888877654 444544432 3333444455555555 78999999876543 34556
Q ss_pred EeeeEeecCccCCChhHHHHHHHHHHhhhcCccEE---EecChhhhHHHHHhccCcEEcCH
Q 002334 830 LPLVATSKINHGKGYFQLLFACIEKLLSFLRVKSI---VLPAAEEAESIWTDKFGFKKIDP 887 (935)
Q Consensus 830 lplVAT~~~yRgqG~gr~L~~~IE~~L~~lgV~~L---vLpA~~~a~~~w~~kfGF~~i~~ 887 (935)
|-=+=|++.|||+|+|+.|++.+-+.+..+|..++ ++.--.-|+.+|++ .|++...+
T Consensus 87 leDlyV~e~yR~kG~Gs~Ll~~va~~A~~~G~~rv~w~vldwN~rAi~lY~k-~gaq~l~~ 146 (163)
T KOG3216|consen 87 LEDLYVREQYRGKGIGSKLLKFVAEEADKLGTPRVEWVVLDWNHRAILLYEK-VGAQDLKE 146 (163)
T ss_pred EEeeEecchhcccChHHHHHHHHHHHHHHcCCCcEEEEEeccchhHHHHHHH-hCccccce
Confidence 77788999999999999999999999999998874 66666779999999 99998766
No 86
>PF13831 PHD_2: PHD-finger; PDB: 2L43_A 2KU3_A.
Probab=96.56 E-value=0.00051 Score=53.52 Aligned_cols=34 Identities=44% Similarity=1.111 Sum_probs=20.9
Q ss_pred CceecccCCCcccccccCCCCCCCCC-Cccccccc
Q 002334 566 GNLLPCDGCPRAFHKECASLSSIPQG-DWYCKYCQ 599 (935)
Q Consensus 566 G~Ll~CD~Cp~afH~~CL~L~~vPeg-~W~Cp~C~ 599 (935)
+.|+.|++|.-..|+.|+++..+|.+ +|+|..|+
T Consensus 2 n~ll~C~~C~v~VH~~CYGv~~~~~~~~W~C~~C~ 36 (36)
T PF13831_consen 2 NPLLFCDNCNVAVHQSCYGVSEVPDGDDWLCDRCE 36 (36)
T ss_dssp CEEEE-SSS--EEEHHHHT-SS--SS-----HHH-
T ss_pred CceEEeCCCCCcCChhhCCcccCCCCCcEECCcCC
Confidence 46899999999999999999999987 79999884
No 87
>PF12746 GNAT_acetyltran: GNAT acetyltransferase; PDB: 3G3S_B.
Probab=96.54 E-value=0.014 Score=64.17 Aligned_cols=77 Identities=16% Similarity=-0.016 Sum_probs=55.0
Q ss_pred eeCCeEEEEEEEEEeCCeeEEEeeeEeecCccCCChhHHHHHHHHHHhhhcCccEEEecChhhhHHHHHhccCcEEcCH
Q 002334 809 TVNSSVVSAGILRVFGQEVAELPLVATSKINHGKGYFQLLFACIEKLLSFLRVKSIVLPAAEEAESIWTDKFGFKKIDP 887 (935)
Q Consensus 809 ~~~~~vVsaA~lrv~g~~vAElplVAT~~~yRgqG~gr~L~~~IE~~L~~lgV~~LvLpA~~~a~~~w~~kfGF~~i~~ 887 (935)
..+|+|||.|+-.....+.+||- |+|+++|||||+++++..++.....+-|+--.|=-+ ..+-----.|+||+...+
T Consensus 171 ~~~~~iVs~~~s~~~~~~~~EI~-I~T~~~yR~kGLA~~~aa~~I~~Cl~~~l~P~WDc~-N~~S~~lA~kLGf~~~~~ 247 (265)
T PF12746_consen 171 LHDGEIVSGCSSYFVYENGIEID-IETHPEYRGKGLATAVAAAFILECLENGLYPSWDCH-NLASIALAEKLGFHFDFE 247 (265)
T ss_dssp EETTEEEEEEEEEEEETTEEEEE-EEE-CCCTTSSHHHHHHHHHHHHHHHTT-EEE-EES-SHHHHHHHHHCT--EEEE
T ss_pred EECCEEEEEEEEEEEECCEEEEE-EEECHHhhcCCHHHHHHHHHHHHHHHCCCCcCeeCC-CHHHHHHHHHcCCcccce
Confidence 56899999777666666788986 799999999999999999999999999988877543 222222333599986543
No 88
>PF08444 Gly_acyl_tr_C: Aralkyl acyl-CoA:amino acid N-acyltransferase, C-terminal region; InterPro: IPR013652 This entry represents mammalian-specific glycine N-acyltransferase (also called aralkyl acyl-CoA:amino acid N-acyltransferase; 2.3.1.13 from EC). Mitochondrial acyltransferases catalyse the transfer of an acyl group from acyl-CoA to the N terminus of glycine to produce N-acylglycine. These enzymes can conjugate a multitude of substrates to form a variety of N-acylglycines. The CoA derivatives of a number of aliphatic and aromatic acids, but not phenylacetyl-CoA or (indol-3-yl)acetyl-CoA, can act as donor [, ].
Probab=96.46 E-value=0.0051 Score=57.17 Aligned_cols=75 Identities=16% Similarity=0.179 Sum_probs=57.5
Q ss_pred EEeeCCeEEEEEEEEEeCCeeEEEeeeEeecCccCCChhHHHHHHHHHHhhhcCccE-EEec-ChhhhHHHHHhccCcEE
Q 002334 807 ILTVNSSVVSAGILRVFGQEVAELPLVATSKINHGKGYFQLLFACIEKLLSFLRVKS-IVLP-AAEEAESIWTDKFGFKK 884 (935)
Q Consensus 807 VL~~~~~vVsaA~lrv~g~~vAElplVAT~~~yRgqG~gr~L~~~IE~~L~~lgV~~-LvLp-A~~~a~~~w~~kfGF~~ 884 (935)
||--+|.+||=.. -+..+||+.-.|.|+|||||+.+.++....+.|..+|+.- ..+. +-+..+.+-.+ +||..
T Consensus 3 llgpeG~PVSW~l----mdqtge~rmgyTlPeyR~~G~~~~v~~~~~~~L~~~g~P~Y~hv~~~N~~~~r~~~~-lg~~~ 77 (89)
T PF08444_consen 3 LLGPEGNPVSWSL----MDQTGEMRMGYTLPEYRGQGLMSQVMYHLAQYLHKLGFPFYGHVDEDNEASQRLSKS-LGFIF 77 (89)
T ss_pred ccCCCCCEeEEEE----ecccccccccccCHhHhcCCHHHHHHHHHHHHHHHCCCCeEeehHhccHHHHHHHHH-CCCee
Confidence 3455788888654 4578999999999999999999999999999999999984 2222 22334445555 99988
Q ss_pred cC
Q 002334 885 ID 886 (935)
Q Consensus 885 i~ 886 (935)
++
T Consensus 78 ~p 79 (89)
T PF08444_consen 78 MP 79 (89)
T ss_pred cC
Confidence 75
No 89
>cd04718 BAH_plant_2 BAH, or Bromo Adjacent Homology domain, plant-specific sub-family with unknown function. BAH domains are found in a variety of proteins playing roles in transcriptional silencing and the remodeling of chromatin. It is assumed that in most or all of these instances the BAH domain mediates protein-protein interactions.
Probab=96.43 E-value=0.0015 Score=65.75 Aligned_cols=27 Identities=41% Similarity=1.032 Sum_probs=24.1
Q ss_pred cCCCCCCCCCcCCccCCCCCCCceecCCccch
Q 002334 674 EFHVGCLKKHKMADLRELPKGKWFCCMDCSRI 705 (935)
Q Consensus 674 ~YHv~CL~p~~~~~L~evP~g~WfCc~~C~~i 705 (935)
.||+.||+| ||+++|+|+|+| +.|..-
T Consensus 1 g~H~~CL~P----pl~~~P~g~W~C-p~C~~~ 27 (148)
T cd04718 1 GFHLCCLRP----PLKEVPEGDWIC-PFCEVE 27 (148)
T ss_pred CcccccCCC----CCCCCCCCCcCC-CCCcCC
Confidence 599999998 899999999999 889643
No 90
>PF12568 DUF3749: Acetyltransferase (GNAT) domain; InterPro: IPR024612 This domain is found in uncharacterised proteins from Gammaproteobacteria, and is approximately 40 amino acids in length. It contains two completely conserved residues (D and I) that may be functionally important. Proteins having this domain are frequently annotated as acetyltransferases of the GNAT family; however there is little accompanying annotation to confirm this.; PDB: 2K5T_A.
Probab=96.33 E-value=0.027 Score=55.58 Aligned_cols=81 Identities=19% Similarity=0.261 Sum_probs=57.4
Q ss_pred ceEEEEEeeCCeEEEEEEEEEeCCeeEEEeeeEeecCccCCChhHHHHHHHHHHhhhcCccEEEecCh------hhhHHH
Q 002334 802 GMYCAILTVNSSVVSAGILRVFGQEVAELPLVATSKINHGKGYFQLLFACIEKLLSFLRVKSIVLPAA------EEAESI 875 (935)
Q Consensus 802 GfY~~VL~~~~~vVsaA~lrv~g~~vAElplVAT~~~yRgqG~gr~L~~~IE~~L~~lgV~~LvLpA~------~~a~~~ 875 (935)
-+|++ .-|+.++||+.+.+.|. -|+|--+.|++.=||.|+|..|++.+.+.+ -+|...++.+. ..+...
T Consensus 39 ~l~aA--rFNdRlLgAv~v~~~~~-~~~L~~l~VRevTRrRGVG~yLlee~~rq~--p~i~~w~l~~~~~~~~~~~~~~~ 113 (128)
T PF12568_consen 39 RLFAA--RFNDRLLGAVKVTISGQ-QAELSDLCVREVTRRRGVGLYLLEEVLRQL--PDIKHWWLADEGVEPQDRAVMAA 113 (128)
T ss_dssp EEEEE--EETTEEEEEEEEEEETT-EEEEEEEEE-TT-SSSSHHHHHHHHHHHHS---S--EEEE--TT-S--THHHHHH
T ss_pred eEEEE--EechheeeeEEEEEcCc-ceEEeeEEEeeccccccHHHHHHHHHHHHC--CCCcEEEEecCCCcccchHHHHH
Confidence 36666 78999999999999874 799999999999999999999999999999 45555555443 233344
Q ss_pred HHhccCcEEcCH
Q 002334 876 WTDKFGFKKIDP 887 (935)
Q Consensus 876 w~~kfGF~~i~~ 887 (935)
+...+||...++
T Consensus 114 Fm~a~GF~~~~~ 125 (128)
T PF12568_consen 114 FMQACGFSAQSD 125 (128)
T ss_dssp HHHHHT-EE-SS
T ss_pred HHHHcCccccCC
Confidence 444599987653
No 91
>KOG0955 consensus PHD finger protein BR140/LIN-49 [General function prediction only]
Probab=96.30 E-value=0.0025 Score=80.29 Aligned_cols=57 Identities=25% Similarity=0.661 Sum_probs=44.6
Q ss_pred ccCCcceeccCCCCCCCCCCCCceeeCCCCCCcCCCCCCCCCcCCccCCCCCCCceecCCccchhHHH
Q 002334 642 AELSGCLLCRGCDFSKSGFGPRTILLCDQCEREFHVGCLKKHKMADLRELPKGKWFCCMDCSRINSVL 709 (935)
Q Consensus 642 ~e~~~C~iC~~~df~~sgf~~~tLL~CDqCdr~YHv~CL~p~~~~~L~evP~g~WfCc~~C~~i~~~L 709 (935)
++...|.+|.+++- .+-+.+++||.|+.++|.+|.. .+-+|+|.|+| ..|-......
T Consensus 217 ~~D~~C~iC~~~~~----~n~n~ivfCD~Cnl~VHq~Cyg------i~~ipeg~WlC-r~Cl~s~~~~ 273 (1051)
T KOG0955|consen 217 EEDAVCCICLDGEC----QNSNVIVFCDGCNLAVHQECYG------IPFIPEGQWLC-RRCLQSPQRP 273 (1051)
T ss_pred CCCccceeeccccc----CCCceEEEcCCCcchhhhhccC------CCCCCCCcEee-hhhccCcCcc
Confidence 34567999998863 3457899999999999999995 45578999999 8886544443
No 92
>KOG4144 consensus Arylalkylamine N-acetyltransferase [General function prediction only]
Probab=96.21 E-value=0.0038 Score=63.18 Aligned_cols=61 Identities=20% Similarity=0.258 Sum_probs=51.9
Q ss_pred eeEEEeeeEeecCccCCChhHHHHHH-HHHHhhhcCccEEEecChhhhHHHHHhccCcEEcCH
Q 002334 826 EVAELPLVATSKINHGKGYFQLLFAC-IEKLLSFLRVKSIVLPAAEEAESIWTDKFGFKKIDP 887 (935)
Q Consensus 826 ~vAElplVAT~~~yRgqG~gr~L~~~-IE~~L~~lgV~~LvLpA~~~a~~~w~~kfGF~~i~~ 887 (935)
.-+.|-.+|+.++||.||++..|+.. |..+-..-=+++.+|=+-+.+++||++ |||+.+++
T Consensus 100 ~ni~iHsl~Ihpa~rk~g~a~~Ll~~ylq~l~~q~i~~r~~Li~h~pLvPFYEr-~gFk~vgp 161 (190)
T KOG4144|consen 100 HNIHIHSLAIHPAFRKQGRAPILLWRYLQHLGSQPIVRRAALICHDPLVPFYER-FGFKAVGP 161 (190)
T ss_pred cceeEEEEEecHHHHhcCcchhHHHHHHHHhhcCccccceeeeecCCccchhHh-cCceeecc
Confidence 34778889999999999999999887 444445555678999999999999999 99999998
No 93
>COG3053 CitC Citrate lyase synthetase [Energy production and conversion]
Probab=96.19 E-value=0.018 Score=63.62 Aligned_cols=79 Identities=20% Similarity=0.298 Sum_probs=69.5
Q ss_pred eEEEEEeeCCeEEEEEEEEEeCCeeEEEeeeEeecCccCCChhHHHHHHHHHHhhhcCccEEEecChhhhHHHHHhccCc
Q 002334 803 MYCAILTVNSSVVSAGILRVFGQEVAELPLVATSKINHGKGYFQLLFACIEKLLSFLRVKSIVLPAAEEAESIWTDKFGF 882 (935)
Q Consensus 803 fY~~VL~~~~~vVsaA~lrv~g~~vAElplVAT~~~yRgqG~gr~L~~~IE~~L~~lgV~~LvLpA~~~a~~~w~~kfGF 882 (935)
.++++...|+++|+|+++ .|. -|.-|||++.+||-|+.-.|+..+-.++-++|.-.||+-+-++-..++.. +||
T Consensus 37 ~~v~~~~~~~~iiacGsi--aGn---vikcvAvs~s~qGeGl~lkl~TeLin~ay~~g~~hLFiyTKp~~~~lFk~-~GF 110 (352)
T COG3053 37 YFVAIYRDNEEIIACGSI--AGN---VIKCVAVSESLQGEGLALKLVTELINLAYERGRTHLFIYTKPEYAALFKQ-CGF 110 (352)
T ss_pred EEEEEEcCCCcEEEeccc--ccc---eeEEEEechhcccccHHHHHHHHHHHHHHHcCCceEEEEechhHHHHHHh-CCc
Confidence 344444456999999995 564 38999999999999999999999999999999999999999999999999 999
Q ss_pred EEcCH
Q 002334 883 KKIDP 887 (935)
Q Consensus 883 ~~i~~ 887 (935)
..+..
T Consensus 111 ~~i~~ 115 (352)
T COG3053 111 SEIAS 115 (352)
T ss_pred eEeec
Confidence 98876
No 94
>PF14542 Acetyltransf_CG: GCN5-related N-acetyl-transferase; PDB: 2H5M_A 2Q44_A 1XMT_A 2Q4Y_A 2IL4_A 2EVN_A 1R57_A.
Probab=96.18 E-value=0.024 Score=51.14 Aligned_cols=58 Identities=12% Similarity=0.029 Sum_probs=50.0
Q ss_pred EEeeCCeEEEEEEEEEeCCeeEEEeeeEeecCccCCChhHHHHHHHHHHhhhcCccEEE
Q 002334 807 ILTVNSSVVSAGILRVFGQEVAELPLVATSKINHGKGYFQLLFACIEKLLSFLRVKSIV 865 (935)
Q Consensus 807 VL~~~~~vVsaA~lrv~g~~vAElplVAT~~~yRgqG~gr~L~~~IE~~L~~lgV~~Lv 865 (935)
.+..+|+.+|...++. ..++..|--.-|.+++||||+++.||+++.+.++.-|.+-+-
T Consensus 3 ~~~~~g~~~a~l~Y~~-~~~~~~i~hT~V~~~~rGqGia~~L~~~~l~~a~~~~~kv~p 60 (78)
T PF14542_consen 3 ELKDDGEEIAELTYRE-DGGVIVITHTEVPPELRGQGIAKKLVEAALDYARENGLKVVP 60 (78)
T ss_dssp EEESSTTEEEEEEEEE-SSSEEEEEEEEE-CSSSTTTHHHHHHHHHHHHHHHTT-EEEE
T ss_pred EEEECCEEEEEEEEEe-CCCEEEEEEEEECccccCCcHHHHHHHHHHHHHHHCCCEEEE
Confidence 4567788999999987 668999999999999999999999999999999999987553
No 95
>COG0454 WecD Histone acetyltransferase HPA2 and related acetyltransferases [Transcription / General function prediction only]
Probab=96.16 E-value=0.0066 Score=50.91 Aligned_cols=44 Identities=16% Similarity=0.120 Sum_probs=39.5
Q ss_pred eEeecCccCCChhHHHHHHHHHHhhhcCccEEEecChhhhHHHHHhccCc
Q 002334 833 VATSKINHGKGYFQLLFACIEKLLSFLRVKSIVLPAAEEAESIWTDKFGF 882 (935)
Q Consensus 833 VAT~~~yRgqG~gr~L~~~IE~~L~~lgV~~LvLpA~~~a~~~w~~kfGF 882 (935)
++|+++|||+|+|+.|+..+++.+...|+. ....+..+|.. +||
T Consensus 87 l~v~~~~rg~Gig~~Ll~~~~~~~~~~g~~-----~~~~~~~~~~~-~~~ 130 (156)
T COG0454 87 LYVLPEYRGKGIGSALLEAALEWARKRGIS-----LNRLALEVYEK-NGF 130 (156)
T ss_pred EEecchhhccchHHHHHHHHHHHHHHcCce-----ehHHHHHHHHh-cCC
Confidence 999999999999999999999999998887 55567788888 888
No 96
>COG1444 Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only]
Probab=96.09 E-value=0.0075 Score=74.09 Aligned_cols=58 Identities=16% Similarity=0.095 Sum_probs=49.2
Q ss_pred EEEeeeEeecCccCCChhHHHHHHHHHHhhhcCccEEEe--cChhhhHHHHHhccCcEEcCH
Q 002334 828 AELPLVATSKINHGKGYFQLLFACIEKLLSFLRVKSIVL--PAAEEAESIWTDKFGFKKIDP 887 (935)
Q Consensus 828 AElplVAT~~~yRgqG~gr~L~~~IE~~L~~lgV~~LvL--pA~~~a~~~w~~kfGF~~i~~ 887 (935)
+.|-+|||+|++|++|||++|++.+.++++ .|+..|-. .+.++...||.+ .||.++-=
T Consensus 532 ~RIvRIAvhPe~q~~GiGsrlL~~l~~~a~-~~~DwlgvsFG~t~~L~rFW~r-nGF~pVhl 591 (758)
T COG1444 532 WRIVRIAVHPELQRMGIGSRLLALLIEEAR-KGLDWLGVSFGYTEELLRFWLR-NGFVPVHL 591 (758)
T ss_pred eeEEEEEeCHHHHhcCHHHHHHHHHHHHHh-cCCCEEeeccCCCHHHHHHHHH-cCeEEEEe
Confidence 678899999999999999999999999986 44555444 478899999999 99998743
No 97
>cd04718 BAH_plant_2 BAH, or Bromo Adjacent Homology domain, plant-specific sub-family with unknown function. BAH domains are found in a variety of proteins playing roles in transcriptional silencing and the remodeling of chromatin. It is assumed that in most or all of these instances the BAH domain mediates protein-protein interactions.
Probab=96.07 E-value=0.003 Score=63.63 Aligned_cols=25 Identities=40% Similarity=1.132 Sum_probs=22.8
Q ss_pred ccccccCC--CCCCCCCCccccccccc
Q 002334 577 AFHKECAS--LSSIPQGDWYCKYCQNM 601 (935)
Q Consensus 577 afH~~CL~--L~~vPeg~W~Cp~C~~~ 601 (935)
+||+.||+ |..+|+|+|+||.|...
T Consensus 1 g~H~~CL~Ppl~~~P~g~W~Cp~C~~~ 27 (148)
T cd04718 1 GFHLCCLRPPLKEVPEGDWICPFCEVE 27 (148)
T ss_pred CcccccCCCCCCCCCCCCcCCCCCcCC
Confidence 59999996 88999999999999864
No 98
>COG1670 RimL Acetyltransferases, including N-acetylases of ribosomal proteins [Translation, ribosomal structure and biogenesis]
Probab=95.94 E-value=0.048 Score=53.41 Aligned_cols=87 Identities=17% Similarity=0.215 Sum_probs=66.7
Q ss_pred cceEEEEEeeC--CeEEEEEEEEEeC----CeeEEEeeeEeecCccCCChhHHHHHHHHHHhhh-cCccEEEecChhh--
Q 002334 801 GGMYCAILTVN--SSVVSAGILRVFG----QEVAELPLVATSKINHGKGYFQLLFACIEKLLSF-LRVKSIVLPAAEE-- 871 (935)
Q Consensus 801 ~GfY~~VL~~~--~~vVsaA~lrv~g----~~vAElplVAT~~~yRgqG~gr~L~~~IE~~L~~-lgV~~LvLpA~~~-- 871 (935)
.+.|.+++..+ +++||...+.... .+.+|+-..- .+.|+|||++...+.++.+.+-. +|+.+|++-....
T Consensus 64 ~~~~~~~~~~~~~~~~iG~~~~~~~~~~~~~~~~~ig~~l-~~~~~g~G~~tea~~~~l~~~f~~~~l~ri~~~~~~~N~ 142 (187)
T COG1670 64 GGAFAIELKATGDGELIGVIGLSDIDRAANGDLAEIGYWL-DPEYWGKGYATEALRALLDYAFEELGLHRIEATVDPENE 142 (187)
T ss_pred CceEEEEEEeCCCCeEEEEEEEEEeccccccceEEEEEEE-ChHHhcCchHHHHHHHHHHHhhhhcCceEEEEEecCCCH
Confidence 34566665654 4999999998654 4677777666 99999999999999999998666 9999998876654
Q ss_pred -hHHHHHhccCcEEcCHHH
Q 002334 872 -AESIWTDKFGFKKIDPEL 889 (935)
Q Consensus 872 -a~~~w~~kfGF~~i~~~e 889 (935)
+...+.+ +||+..+...
T Consensus 143 ~S~rv~ek-~Gf~~eg~~~ 160 (187)
T COG1670 143 ASIRVYEK-LGFRLEGELR 160 (187)
T ss_pred HHHHHHHH-cCChhhhhhh
Confidence 4556666 9999777544
No 99
>KOG0956 consensus PHD finger protein AF10 [General function prediction only]
Probab=95.84 E-value=0.0041 Score=74.20 Aligned_cols=51 Identities=29% Similarity=0.955 Sum_probs=42.0
Q ss_pred cCCcceeccCCCCCCCCCCCCceeeCC--CCCCcCCCCCCCCCcCCccCCCCCCCceecCCccc
Q 002334 643 ELSGCLLCRGCDFSKSGFGPRTILLCD--QCEREFHVGCLKKHKMADLRELPKGKWFCCMDCSR 704 (935)
Q Consensus 643 e~~~C~iC~~~df~~sgf~~~tLL~CD--qCdr~YHv~CL~p~~~~~L~evP~g~WfCc~~C~~ 704 (935)
.+++|.+|.+- -|..++.|+.|| .|.-+.|..|. .+.++|.|.||| ..|..
T Consensus 4 MVGGCCVCSDE----rGWaeNPLVYCDG~nCsVAVHQaCY------GIvqVPtGpWfC-rKCes 56 (900)
T KOG0956|consen 4 MVGGCCVCSDE----RGWAENPLVYCDGHNCSVAVHQACY------GIVQVPTGPWFC-RKCES 56 (900)
T ss_pred cccceeeecCc----CCCccCceeeecCCCceeeeehhcc------eeEecCCCchhh-hhhhh
Confidence 45789999753 244578899999 79999999999 467899999999 88853
No 100
>COG2388 Predicted acetyltransferase [General function prediction only]
Probab=95.80 E-value=0.022 Score=54.07 Aligned_cols=62 Identities=18% Similarity=0.117 Sum_probs=56.3
Q ss_pred cceEEEEEeeCCeEEEEEEEEEeCCeeEEEeeeEeecCccCCChhHHHHHHHHHHhhhcCccEE
Q 002334 801 GGMYCAILTVNSSVVSAGILRVFGQEVAELPLVATSKINHGKGYFQLLFACIEKLLSFLRVKSI 864 (935)
Q Consensus 801 ~GfY~~VL~~~~~vVsaA~lrv~g~~vAElplVAT~~~yRgqG~gr~L~~~IE~~L~~lgV~~L 864 (935)
+++|++ ..+|+.++.++..-.|.+..-|.---|..++||||+++.|+....+.++.-|.+-+
T Consensus 15 ~~~y~~--~~~G~~~~e~~y~~~~~~~i~i~HT~V~d~lrGqGia~~L~~~al~~ar~~g~kii 76 (99)
T COG2388 15 NGRYVL--TDEGEVIGEATYYDRGENLIIIDHTYVPDELRGQGIAQKLVEKALEEAREAGLKII 76 (99)
T ss_pred ceEEEE--ecCCcEEEEEEEecCCCCEEEEecCcCCHHHcCCcHHHHHHHHHHHHHHHcCCeEc
Confidence 567775 88999999999988899999999999999999999999999999999999998644
No 101
>KOG1245 consensus Chromatin remodeling complex WSTF-ISWI, large subunit (contains heterochromatin localization, PHD and BROMO domains) [Chromatin structure and dynamics]
Probab=95.74 E-value=0.0024 Score=83.11 Aligned_cols=60 Identities=32% Similarity=0.754 Sum_probs=48.9
Q ss_pred ccCCcceeccCCCCCCCCCCCCceeeCCCCCCcCCCCCCCCCcCCccCCCCCCCceecCCccchhHHHHHh
Q 002334 642 AELSGCLLCRGCDFSKSGFGPRTILLCDQCEREFHVGCLKKHKMADLRELPKGKWFCCMDCSRINSVLQNL 712 (935)
Q Consensus 642 ~e~~~C~iC~~~df~~sgf~~~tLL~CDqCdr~YHv~CL~p~~~~~L~evP~g~WfCc~~C~~i~~~LqkL 712 (935)
.....|.+|...+ ....|+.||.|..+||..|++| .+..+|.++||| +.|..-+...+..
T Consensus 1106 ~~~~~c~~cr~k~------~~~~m~lc~~c~~~~h~~C~rp----~~~~~~~~dW~C-~~c~~e~~~rr~~ 1165 (1404)
T KOG1245|consen 1106 AVNALCKVCRRKK------QDEKMLLCDECLSGFHLFCLRP----ALSSVPPGDWMC-PSCRKEHRARRQK 1165 (1404)
T ss_pred cchhhhhhhhhcc------cchhhhhhHhhhhhHHHHhhhh----hhccCCcCCccC-Cccchhhhhhhhh
Confidence 3446799998643 5678999999999999999998 788999999999 8998777633333
No 102
>KOG2488 consensus Acetyltransferase (GNAT) domain-containing protein [General function prediction only]
Probab=95.56 E-value=0.041 Score=57.60 Aligned_cols=84 Identities=20% Similarity=0.240 Sum_probs=63.1
Q ss_pred eEEEEEeeCCeEEEEEEEEEeC---CeeEEEeeeEeecCccCCChhHHHHHHHHHHhhhcCccEEEec---ChhhhHHHH
Q 002334 803 MYCAILTVNSSVVSAGILRVFG---QEVAELPLVATSKINHGKGYFQLLFACIEKLLSFLRVKSIVLP---AAEEAESIW 876 (935)
Q Consensus 803 fY~~VL~~~~~vVsaA~lrv~g---~~vAElplVAT~~~yRgqG~gr~L~~~IE~~L~~lgV~~LvLp---A~~~a~~~w 876 (935)
-|.+.....+++||-+++|..- ..++=.-=|-+.++|||+|+|+.|++.+|.++...+.+.++|- .-.-|.+||
T Consensus 93 ~Yi~a~~~~~~~vgf~~Frf~vd~g~~vlYcyEvqv~~~yR~kGiGk~LL~~l~~~a~~~~~~kVmLTVf~~N~~al~Fy 172 (202)
T KOG2488|consen 93 RYICAWNNKSKLVGFTMFRFTVDTGDPVLYCYEVQVASAYRGKGIGKFLLDTLEKLADSRHMRKVMLTVFSENIRALGFY 172 (202)
T ss_pred eEEEEEcCCCceeeEEEEEEEcccCCeEEEEEEEeehhhhhccChHHHHHHHHHHHHHHHHhhhheeeeecccchhHHHH
Confidence 3444444445899999988643 2344444455667899999999999999999999999876654 445689999
Q ss_pred HhccCcEEcCH
Q 002334 877 TDKFGFKKIDP 887 (935)
Q Consensus 877 ~~kfGF~~i~~ 887 (935)
.+ +||-+...
T Consensus 173 ~~-~gf~~~~~ 182 (202)
T KOG2488|consen 173 HR-LGFVVDEE 182 (202)
T ss_pred HH-cCcccCCC
Confidence 99 99987765
No 103
>KOG1245 consensus Chromatin remodeling complex WSTF-ISWI, large subunit (contains heterochromatin localization, PHD and BROMO domains) [Chromatin structure and dynamics]
Probab=94.77 E-value=0.0072 Score=78.87 Aligned_cols=51 Identities=35% Similarity=0.917 Sum_probs=43.6
Q ss_pred CCcccccccCccCCcCcccccCCCCceecccCCCcccccccCC--CCCCCCCCccccccccc
Q 002334 542 GLGIICHCCNSEVSPSQFEAHADGGNLLPCDGCPRAFHKECAS--LSSIPQGDWYCKYCQNM 601 (935)
Q Consensus 542 ~~~i~C~~C~~eiSpS~FE~hadgG~Ll~CD~Cp~afH~~CL~--L~~vPeg~W~Cp~C~~~ 601 (935)
...+.|.+|.... +...|+.||.|...||..|+. +..+|.|+|+||.|+..
T Consensus 1106 ~~~~~c~~cr~k~---------~~~~m~lc~~c~~~~h~~C~rp~~~~~~~~dW~C~~c~~e 1158 (1404)
T KOG1245|consen 1106 AVNALCKVCRRKK---------QDEKMLLCDECLSGFHLFCLRPALSSVPPGDWMCPSCRKE 1158 (1404)
T ss_pred cchhhhhhhhhcc---------cchhhhhhHhhhhhHHHHhhhhhhccCCcCCccCCccchh
Confidence 4568899999642 345899999999999999996 78999999999999865
No 104
>KOG3138 consensus Predicted N-acetyltransferase [General function prediction only]
Probab=94.49 E-value=0.043 Score=57.54 Aligned_cols=62 Identities=18% Similarity=0.173 Sum_probs=51.7
Q ss_pred eEEEeeeEeecCccCCChhHHHHHHHHHHhhhcC-ccEEEecC---hhhhHHHHHhccCcEEcCHHH
Q 002334 827 VAELPLVATSKINHGKGYFQLLFACIEKLLSFLR-VKSIVLPA---AEEAESIWTDKFGFKKIDPEL 889 (935)
Q Consensus 827 vAElplVAT~~~yRgqG~gr~L~~~IE~~L~~lg-V~~LvLpA---~~~a~~~w~~kfGF~~i~~~e 889 (935)
+.-|-.++|.+.||.+|+|+.|++.+.+.+...+ .+++.|-+ -..|..||++ +||+.+....
T Consensus 89 ~~yi~~Lgvl~~yR~~gIGs~Ll~~~~~~~~~~~~~~~v~lHv~~~n~~ai~~Y~~-~gF~~~~~~~ 154 (187)
T KOG3138|consen 89 VIYILSLGVLPRYRNKGIGSKLLEFVKKYCSEAHQCRRVYLHVQAVNESAIEFYEK-RGFEIVERLK 154 (187)
T ss_pred eeEEEeecccHHHHhcchHHHHHHHHHHHHhcccccceEEEEEEeCCCcHHHHHHh-cCceEeeccc
Confidence 6778999999999999999999999999999999 66665553 3457778887 9999887643
No 105
>KOG0954 consensus PHD finger protein [General function prediction only]
Probab=94.48 E-value=0.016 Score=69.88 Aligned_cols=52 Identities=31% Similarity=0.758 Sum_probs=42.7
Q ss_pred cCCcceeccCCCCCCCCCCCCceeeCCCCCCcCCCCCCCCCcCCccCCCCCCCceecCCccch
Q 002334 643 ELSGCLLCRGCDFSKSGFGPRTILLCDQCEREFHVGCLKKHKMADLRELPKGKWFCCMDCSRI 705 (935)
Q Consensus 643 e~~~C~iC~~~df~~sgf~~~tLL~CDqCdr~YHv~CL~p~~~~~L~evP~g~WfCc~~C~~i 705 (935)
+...|.+|..+| ......|++||.|.-..|..|. .+.++|.+.|.| ..|...
T Consensus 270 edviCDvCrspD----~e~~neMVfCd~Cn~cVHqaCy------GIle~p~gpWlC-r~Calg 321 (893)
T KOG0954|consen 270 EDVICDVCRSPD----SEEANEMVFCDKCNICVHQACY------GILEVPEGPWLC-RTCALG 321 (893)
T ss_pred ccceeceecCCC----ccccceeEEeccchhHHHHhhh------ceeecCCCCeee-hhcccc
Confidence 445699999876 2356789999999999999999 567899999999 788543
No 106
>COG4552 Eis Predicted acetyltransferase involved in intracellular survival and related acetyltransferases [General function prediction only]
Probab=94.41 E-value=0.057 Score=61.15 Aligned_cols=84 Identities=18% Similarity=0.199 Sum_probs=66.4
Q ss_pred CceecceEEEEEeeCCeEEEEEEEEEe------CC---eeEEEeeeEeecCccCCChhHHHHHHHHHHhhhcCccEEEec
Q 002334 797 GQEFGGMYCAILTVNSSVVSAGILRVF------GQ---EVAELPLVATSKINHGKGYFQLLFACIEKLLSFLRVKSIVLP 867 (935)
Q Consensus 797 ~~~f~GfY~~VL~~~~~vVsaA~lrv~------g~---~vAElplVAT~~~yRgqG~gr~L~~~IE~~L~~lgV~~LvLp 867 (935)
.+++.++|.+ +.+.++++- |++. |. ..|-|-.||+.|+|||+|+-|+|+....+..++-|+.-.+|-
T Consensus 35 il~~~n~~vi--~~nqkl~s~--L~i~~f~~~f~~q~l~t~GIa~Vas~P~~R~~G~~~~Ll~~sLre~~~kG~p~s~L~ 110 (389)
T COG4552 35 ILAEPNSYVI--YMNQKLASR--LHIPPFIFWFGNQVLPTAGIAGVASAPTYRRRGALRALLAHSLREIARKGYPVSALH 110 (389)
T ss_pred hccCCcceEE--eehhhhhhc--ccccchheeeCCeeeeccceEEEEechhhccCcHHHHHHHHHHHHHHHcCCeeEEec
Confidence 4566777765 777777653 3333 33 356788899999999999999999999999999999988886
Q ss_pred ChhhhHHHHHhccCcEEcCH
Q 002334 868 AAEEAESIWTDKFGFKKIDP 887 (935)
Q Consensus 868 A~~~a~~~w~~kfGF~~i~~ 887 (935)
+. ..+||.+ |||..-+.
T Consensus 111 P~--s~~iYrK-fGye~asn 127 (389)
T COG4552 111 PF--SGGIYRK-FGYEYASN 127 (389)
T ss_pred cC--chhhHhh-ccccccce
Confidence 65 3679998 99987665
No 107
>PF13480 Acetyltransf_6: Acetyltransferase (GNAT) domain
Probab=94.18 E-value=0.34 Score=45.76 Aligned_cols=66 Identities=8% Similarity=-0.162 Sum_probs=57.9
Q ss_pred eEEEEEeeCCeEEEEEEEEEeCCeeEEEeeeEeecCccCCChhHHHHHHHHHHhhhcCccEEEecCh
Q 002334 803 MYCAILTVNSSVVSAGILRVFGQEVAELPLVATSKINHGKGYFQLLFACIEKLLSFLRVKSIVLPAA 869 (935)
Q Consensus 803 fY~~VL~~~~~vVsaA~lrv~g~~vAElplVAT~~~yRgqG~gr~L~~~IE~~L~~lgV~~LvLpA~ 869 (935)
...++++.+|++||++.....+ +.+..-..+++++|++.+.|..|+..+.+.+.+.|++.+-+...
T Consensus 71 ~~l~~~~~~g~~va~~~~~~~~-~~~~~~~~g~~~~~~~~~~~~~l~~~~i~~a~~~g~~~~d~g~g 136 (142)
T PF13480_consen 71 LRLFVLYDGGEPVAFALGFRHG-GTLYYWYGGYDPEYRKYSPGRLLLWEAIRWAIERGLRYFDFGGG 136 (142)
T ss_pred EEEEEEEECCEEEEEEEEEEEC-CEEEEEEEEECHhhHhCCHHHHHHHHHHHHHHHCCCCEEEECCC
Confidence 5666778899999999776655 68889999999999999999999999999999999999887653
No 108
>KOG4323 consensus Polycomb-like PHD Zn-finger protein [General function prediction only]
Probab=93.97 E-value=0.027 Score=65.84 Aligned_cols=49 Identities=29% Similarity=0.813 Sum_probs=38.7
Q ss_pred cccccCccCCcCcccccCCCCceecccCCCcccccccCC------CCCCCCCCccccccccc
Q 002334 546 ICHCCNSEVSPSQFEAHADGGNLLPCDGCPRAFHKECAS------LSSIPQGDWYCKYCQNM 601 (935)
Q Consensus 546 ~C~~C~~eiSpS~FE~hadgG~Ll~CD~Cp~afH~~CL~------L~~vPeg~W~Cp~C~~~ 601 (935)
.|..|....++ .+..||.|++|..-||+.|.. +-.-+.+.|||-.|...
T Consensus 170 qc~vC~~g~~~-------~~NrmlqC~~C~~~fHq~Chqp~i~~~l~~D~~~~w~C~~C~~~ 224 (464)
T KOG4323|consen 170 QCSVCYCGGPG-------AGNRMLQCDKCRQWYHQACHQPLIKDELAGDPFYEWFCDVCNRG 224 (464)
T ss_pred eeeeeecCCcC-------ccceeeeecccccHHHHHhccCCCCHhhccCccceEeehhhccc
Confidence 38888865554 466999999999999999995 12336788999999864
No 109
>COG5141 PHD zinc finger-containing protein [General function prediction only]
Probab=93.58 E-value=0.027 Score=65.41 Aligned_cols=47 Identities=32% Similarity=0.826 Sum_probs=36.8
Q ss_pred CcceeccCCCCCCCCCCCCceeeCCCCCCcCCCCCCCCCcCCccCCCCCCCceecCCc
Q 002334 645 SGCLLCRGCDFSKSGFGPRTILLCDQCEREFHVGCLKKHKMADLRELPKGKWFCCMDC 702 (935)
Q Consensus 645 ~~C~iC~~~df~~sgf~~~tLL~CDqCdr~YHv~CL~p~~~~~L~evP~g~WfCc~~C 702 (935)
+.|.+|...+ ..+.++++.||.|+-+.|..|.. +.-+|+|.|+| ..|
T Consensus 194 ~~C~~c~~t~----~eN~naiVfCdgC~i~VHq~CYG------I~f~peG~WlC-rkC 240 (669)
T COG5141 194 DICTKCTSTH----NENSNAIVFCDGCEICVHQSCYG------IQFLPEGFWLC-RKC 240 (669)
T ss_pred hhhHhccccc----cCCcceEEEecCcchhhhhhccc------ceecCcchhhh-hhh
Confidence 4588887654 22457899999999999999994 45578999998 555
No 110
>TIGR03694 exosort_acyl putative PEP-CTERM/exosortase system-associated acyltransferase. Members of this protein family are restricted to bacterial species with the PEP-CTERM/exosortase system predicted to act in exopolysaccharide-associated protein targeting. PSI-BLAST and CDD reveal relationships to the acyltransferase family that includes N-acyl-L-homoserine lactone synthetase. Several members of this family may be found in a single genome. These proteins likely contribute to chemical modifications in exopolysaccharide and biofilm structural material production.
Probab=93.27 E-value=0.45 Score=51.59 Aligned_cols=124 Identities=15% Similarity=0.120 Sum_probs=82.4
Q ss_pred HHHHHHHHHhhhhcCCCcccCCCCCCccccccccccCCCceecceEEEEEee-CCeEEEEEEEEEe--------------
Q 002334 759 RLLLSQAVAIFHDCFDPIVDSISGRDLIPSMVYGRNLRGQEFGGMYCAILTV-NSSVVSAGILRVF-------------- 823 (935)
Q Consensus 759 ~skLa~AL~If~EcF~Pivd~rSgrDLIp~MVygr~~~~~~f~GfY~~VL~~-~~~vVsaA~lrv~-------------- 823 (935)
...+..|..+=++-|- +. -|.++..+---+.++...|-..-|.++... +|++||+++|...
T Consensus 16 ~~~~~~~~~lR~~VFv---~e-~gw~~~~~~~~~~E~D~~D~~~~h~l~~~~~~g~vvG~~RLl~t~~~~p~~~~p~e~~ 91 (241)
T TIGR03694 16 PELLEEAFRLRYQVYC---EE-LGFEPPSDYPDGLETDEYDAHSVHSLLRHRRTGTFVGCVRLVLPNSSDPDQPFPFEKH 91 (241)
T ss_pred HHHHHHHHHHHHHHHH---Hh-cCCCCCCCCCCCCcCCCCCCCCcEEEEEECCCCCEEEEEEEeccccccccccccHHHH
Confidence 3445666666666661 11 122211110123344445545566555543 5899999998642
Q ss_pred ----------------CCeeEEEeeeEeecCccCC--------C--------------------hhHHHHHHHHHHhhhc
Q 002334 824 ----------------GQEVAELPLVATSKINHGK--------G--------------------YFQLLFACIEKLLSFL 859 (935)
Q Consensus 824 ----------------g~~vAElplVAT~~~yRgq--------G--------------------~gr~L~~~IE~~L~~l 859 (935)
+..++|+-++|+.++||+. | +...|+.++-+.+...
T Consensus 92 ~~~~~~~~~~~~~~~~~~~i~E~SRf~V~~~~r~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~a~~~ 171 (241)
T TIGR03694 92 CSHSLDGLFLDPRRLPRSRIAEVSRLAVSKDFRRRKGEKLKPSGVGVIETEAPFSESERRRFPHIPLGLYLGLIALSSAN 171 (241)
T ss_pred hccccchhhcCccccCCCceEEeehheECHhHhCCcccccccccccccccccccchhhcccCchHHHHHHHHHHHHHHHC
Confidence 1369999999999999974 2 4467999999999999
Q ss_pred CccEEEecChhhhHHHHHhccCcE--EcCH
Q 002334 860 RVKSIVLPAAEEAESIWTDKFGFK--KIDP 887 (935)
Q Consensus 860 gV~~LvLpA~~~a~~~w~~kfGF~--~i~~ 887 (935)
|+++++.-+.+....++.+ +||. .+++
T Consensus 172 Gi~~~~~v~~~~l~r~l~r-~G~~~~~lG~ 200 (241)
T TIGR03694 172 GITHWYAIMEPRLARLLSR-FGIQFRQVGP 200 (241)
T ss_pred CCcEEEEEeCHHHHHHHHH-hCCceEEcCC
Confidence 9999998888887887765 8864 4443
No 111
>KOG3234 consensus Acetyltransferase, (GNAT) family [General function prediction only]
Probab=92.90 E-value=0.13 Score=52.49 Aligned_cols=58 Identities=10% Similarity=0.107 Sum_probs=47.5
Q ss_pred eEEEeeeEeecCccCCChhHHHHHHHHHHhhhcCccEEEecC---hhhhHHHHHhccCcEEc
Q 002334 827 VAELPLVATSKINHGKGYFQLLFACIEKLLSFLRVKSIVLPA---AEEAESIWTDKFGFKKI 885 (935)
Q Consensus 827 vAElplVAT~~~yRgqG~gr~L~~~IE~~L~~lgV~~LvLpA---~~~a~~~w~~kfGF~~i 885 (935)
-+++--++|.|.||++|++..||+.+|+.....+.-.+.|-. -.-|+.+|++ |||.+.
T Consensus 69 h~HvTAltVap~~Rrl~la~~lm~~led~~d~~~a~fvDLfVr~sN~iAI~mYkk-LGY~~Y 129 (173)
T KOG3234|consen 69 HGHVTALTVAPDYRRLGLAAKLMDTLEDVSDVDNAYFVDLFVRVSNQIAIDMYKK-LGYSVY 129 (173)
T ss_pred eeEEEEEEechhHHHHHHHHHHHHHHHHHHHhhhhheeeeeeeccchhHHHHHHh-cCceEE
Confidence 467888999999999999999999999998877655544443 3458999999 999863
No 112
>PF06852 DUF1248: Protein of unknown function (DUF1248); InterPro: IPR009658 This entry represents a conserved region within a number of proteins of unknown function that seem to be specific to Caenorhabditis elegans. Note that some proteins in the entry contain more than one copy of this region.
Probab=92.34 E-value=0.75 Score=48.21 Aligned_cols=83 Identities=18% Similarity=0.213 Sum_probs=59.1
Q ss_pred eEEEEEeeCCeEEEEEEEEEeC-------CeeEEEeeeEeecCccCCChhHHHHHHHH-HHhhhcCccEEEecChhhhHH
Q 002334 803 MYCAILTVNSSVVSAGILRVFG-------QEVAELPLVATSKINHGKGYFQLLFACIE-KLLSFLRVKSIVLPAAEEAES 874 (935)
Q Consensus 803 fY~~VL~~~~~vVsaA~lrv~g-------~~vAElplVAT~~~yRgqG~gr~L~~~IE-~~L~~lgV~~LvLpA~~~a~~ 874 (935)
||.+++.-.+.+|+++++-.+. ..+--+.+.=+.|+|||+|+++ |+..+. +.+.. +=...++-+...+..
T Consensus 47 l~~~~~KgT~~via~~~~~~~~~l~~~~d~pl~~~G~~w~~p~yRg~~~~k-l~~~~~~~~~~~-~~~N~~~~~~~~~~~ 124 (181)
T PF06852_consen 47 LVLTCLKGTDRVIATVHLIRFDPLNPSPDKPLQFIGFFWIDPEYRGKGIMK-LQDDICMDELDS-VDDNSVAQGNVKMSN 124 (181)
T ss_pred EEEEEEcCCCcEEEEEEEEEeccCCCCCCCCeEEEeeeeeCCcccCcchHH-HHHHHHHHHhcc-CCCceeeecCHHHHH
Confidence 3555545556788877764433 2377777777999999999996 555554 44444 334566677888999
Q ss_pred HHHhccCcEEcCH
Q 002334 875 IWTDKFGFKKIDP 887 (935)
Q Consensus 875 ~w~~kfGF~~i~~ 887 (935)
+|.+-|||..++.
T Consensus 125 ~w~k~~G~~~~~h 137 (181)
T PF06852_consen 125 FWHKMFGFDDYGH 137 (181)
T ss_pred HHHHHhCCCCCcc
Confidence 9999999988887
No 113
>KOG3235 consensus Subunit of the major N alpha-acetyltransferase [General function prediction only]
Probab=92.33 E-value=0.38 Score=49.44 Aligned_cols=81 Identities=14% Similarity=0.208 Sum_probs=62.5
Q ss_pred EEe-eCCeEEEEEEEEEeC-----CeeEEEeeeEeecCccCCChhHHHHHHHHH-HhhhcCccEEEecChh---hhHHHH
Q 002334 807 ILT-VNSSVVSAGILRVFG-----QEVAELPLVATSKINHGKGYFQLLFACIEK-LLSFLRVKSIVLPAAE---EAESIW 876 (935)
Q Consensus 807 VL~-~~~~vVsaA~lrv~g-----~~vAElplVAT~~~yRgqG~gr~L~~~IE~-~L~~lgV~~LvLpA~~---~a~~~w 876 (935)
|.+ .+|.|||-.....+. ..-.+|-.+||...||+.|+++.||..-.+ ++...+.+++-|.-+. .|...|
T Consensus 45 VA~D~~gkiVGYvlAkmee~p~~~~~hGhItSlaV~rs~RrlGla~kLm~qa~rAm~E~~~A~yvsLHVR~SNraAl~LY 124 (193)
T KOG3235|consen 45 VAEDENGKIVGYVLAKMEEDPDDEPPHGHITSLAVKRSYRRLGLAQKLMNQASRAMVEVYEAKYVSLHVRKSNRAALHLY 124 (193)
T ss_pred EEEcCCCcEEEEeeeehhhcccCCCCCCeeEEeeehhhHHHhhHHHHHHHHHHHHHHHhhcceEEEEeeecccHHHHHhh
Confidence 335 578999977766554 125689999999999999999999986554 4555677777777554 588999
Q ss_pred HhccCcEEcCH
Q 002334 877 TDKFGFKKIDP 887 (935)
Q Consensus 877 ~~kfGF~~i~~ 887 (935)
++.+||.+.+-
T Consensus 125 ~~tl~F~v~ev 135 (193)
T KOG3235|consen 125 KNTLGFVVCEV 135 (193)
T ss_pred hhccceEEeec
Confidence 99999998765
No 114
>COG1243 ELP3 Histone acetyltransferase [Transcription / Chromatin structure and dynamics]
Probab=92.31 E-value=0.11 Score=60.70 Aligned_cols=51 Identities=16% Similarity=0.228 Sum_probs=44.7
Q ss_pred ecCccCCChhHHHHHHHHHHhhhcCccEEEecChhhhHHHHHhccCcEEcCH
Q 002334 836 SKINHGKGYFQLLFACIEKLLSFLRVKSIVLPAAEEAESIWTDKFGFKKIDP 887 (935)
Q Consensus 836 ~~~yRgqG~gr~L~~~IE~~L~~lgV~~LvLpA~~~a~~~w~~kfGF~~i~~ 887 (935)
...+|+||||+.||+..|+.+++-|.++|.+-+-..+...|.+ |||...++
T Consensus 459 ~~~~QH~G~G~~L~~~AE~ia~ee~~~ki~viSgiG~ReYy~k-~GY~~~gp 509 (515)
T COG1243 459 EDEWQHRGYGRELLEEAERIAREEGAKKILVISGIGVREYYRK-LGYELDGP 509 (515)
T ss_pred cchhhcccHHHHHHHHHHHHHHhhccccEEEEecccHHHHHHH-hCccccCC
Confidence 5789999999999999999999999999887777778888876 99987654
No 115
>smart00258 SAND SAND domain.
Probab=92.02 E-value=0.14 Score=46.28 Aligned_cols=50 Identities=24% Similarity=0.362 Sum_probs=40.7
Q ss_pred eCCeEEeeCcCCCCceeeCcchhhhcccc-ccCCcccceeccCCccHHHHHHH
Q 002334 258 RDGGILCSCSLCNGCRVIPPSKFEIHACK-QYRRASQYICFENGKSLLEVLRA 309 (935)
Q Consensus 258 ~~~GilC~C~~C~~~~v~s~s~FE~HAG~-~~~~p~~~I~lenG~sL~~v~~~ 309 (935)
..+|+.+-|..|++ +-+||++||.|||. ++++=-..|.. ||.+|+.+++.
T Consensus 19 f~~G~~~kCI~~~~-~~~TP~eFe~~~g~~~~K~WK~sIR~-~g~~Lr~L~~~ 69 (73)
T smart00258 19 FKCGISVKCIQYED-KWFTPKEFEIEGGKGKSKDWKRSIRC-GGSSLRTLMEN 69 (73)
T ss_pred hhcCcccCCccCCC-EEEChHHHHhhcCCcccCCcchheeE-CCccHHHHHHc
Confidence 45599999999986 89999999999995 46665666654 69999998875
No 116
>PF13831 PHD_2: PHD-finger; PDB: 2L43_A 2KU3_A.
Probab=91.13 E-value=0.024 Score=44.31 Aligned_cols=33 Identities=36% Similarity=1.110 Sum_probs=17.7
Q ss_pred CceeeCCCCCCcCCCCCCCCCcCCccCCCCCC-CceecCCc
Q 002334 663 RTILLCDQCEREFHVGCLKKHKMADLRELPKG-KWFCCMDC 702 (935)
Q Consensus 663 ~tLL~CDqCdr~YHv~CL~p~~~~~L~evP~g-~WfCc~~C 702 (935)
+.||.|+.|.-..|..|.. +..+|.+ .|+| .-|
T Consensus 2 n~ll~C~~C~v~VH~~CYG------v~~~~~~~~W~C-~~C 35 (36)
T PF13831_consen 2 NPLLFCDNCNVAVHQSCYG------VSEVPDGDDWLC-DRC 35 (36)
T ss_dssp CEEEE-SSS--EEEHHHHT-------SS--SS------HHH
T ss_pred CceEEeCCCCCcCChhhCC------cccCCCCCcEEC-CcC
Confidence 4699999999999999984 3444555 7999 544
No 117
>PF01342 SAND: SAND domain; InterPro: IPR000770 The SAND domain (named after Sp100, AIRE-1, NucP41/75, DEAF-1) is a conserved ~80 residue region found in a number of nuclear proteins, many of which function in chromatin-dependent transcriptional control. These include proteins linked to various human diseases, such as the Sp100 (Speckled protein 100 kDa), NUDR (Nuclear DEAF-1 related), GMEB (Glucocorticoid Modulatory Element Binding) proteins and AIRE-1 (Autoimmune regulator 1) proteins. Proteins containing the SAND domain have a modular structure; the SAND domain can be associated with a number of other modules, including the bromodomain, the PHD finger and the MYND finger. Because no SAND domain has been found in yeast, it is thought that the SAND domain could be restricted to animal phyla. Many SAND domain-containing proteins, including NUDR, DEAF-1 (Deformed epidermal autoregulatory factor-1) and GMEB, have been shown to bind DNA sequences specifically. The SAND domain has been proposed to mediate the DNA binding activity of these proteins [, ]. The resolution of the 3D structure of the SAND domain from Sp100b has revealed that it consists of a novel alpha/beta fold. The SAND domain adopts a compact fold consisting of a strongly twisted, five-stranded antiparallel beta-sheet with four alpha-helices packing against one side of the beta-sheet. The opposite side of the beta-sheet is solvent exposed. The beta-sheet and alpha-helical parts of the structure form two distinct regions. Multiple hydrophobic residues pack between these regions to form a structural core. A conserved KDWK sequence motif is found within the alpha-helical, positively charged surface patch. The DNA binding surface has been mapped to the alpha-helical region encompassing the KDWK motif [].; GO: 0003677 DNA binding, 0005634 nucleus; PDB: 1OQJ_B 1UFN_A 1H5P_A.
Probab=90.65 E-value=0.1 Score=47.92 Aligned_cols=54 Identities=28% Similarity=0.468 Sum_probs=38.9
Q ss_pred EEEEe-----CCeEEeeCcCCCCceeeCcchhhhcccccc-CCcccceeccCCccHHHHHHH
Q 002334 254 RGIIR-----DGGILCSCSLCNGCRVIPPSKFEIHACKQY-RRASQYICFENGKSLLEVLRA 309 (935)
Q Consensus 254 ~G~i~-----~~GilC~C~~C~~~~v~s~s~FE~HAG~~~-~~p~~~I~lenG~sL~~v~~~ 309 (935)
+|++. ..|+...|-.++ .+-+||.+||.|||..+ |+=-..|.. +|.+|..+|++
T Consensus 19 ~G~L~~~k~~~~g~~~kCI~~~-g~~~TP~eFE~~~G~~~sK~WK~SIr~-~g~~L~~li~~ 78 (82)
T PF01342_consen 19 KGTLYKKKFVKQGICGKCIQCE-GRWFTPSEFERHGGKGSSKDWKRSIRC-GGEPLGKLIEK 78 (82)
T ss_dssp EEEEEHHHH-TTGTTSS-EEET-TEEE-HHHHHHHHTTCTCS-HHHHSEE-TTEEHHHHHHT
T ss_pred EEEEEHHHhhcccccCceEeeC-CcEECHHHHHhhcCcccCCCCCccEEE-CCEEHHHHHhh
Confidence 55554 445666677777 57999999999999874 445667877 89999998864
No 118
>PF00765 Autoind_synth: Autoinducer synthetase; InterPro: IPR001690 Bacterial species have many methods of controlling gene expression and cell growth. Regulation of gene expression in response to changes in cell density is termed quorum sensing [, ]. Quorum-sensing bacteria produce, release and respond to hormone-like molecules (autoinducers) that accumulate in the external environment as the cell population grows. Once a threshold of these molecules is reached, a signal transduction cascade is triggered that ultimately leads to behavioural changes in the bacterium []. Autoinducers are thus clearly important mediators of molecular communication. Conjugal transfer of Agrobacterium octopine-type Ti plasmids is activated by octopine, a metabolite released from plant tumours []. Octopine causes conjugal donors to secrete a pheromone, Agrobacterium autoinducer (AAI), and exogenous AAI further stimulates conjugation. The putative AAI synthase and an AAI-responsive transcriptional regulator have been found to be encoded by the Ti plasmid traI and traR genes, respectively. TraR and TraI are similar to the LuxR and LuxI regulatory proteins of Vibrio fischeri, and AAI is similar in structure to the diffusable V. fischeri autoinducer, the inducing ligand of LuxR. TraR activates target genes in the presence of AAI and also activates traR and traI themselves, creating two positive-feedback loops. TraR-AAI-mediated activation in wild-type Agrobacterium strains is enhanced by culturing on solid media, suggesting a possible role in cell density sensing []. Production of light by the marine bacterium V. fischeri and by recombinant hosts containing cloned lux genes is controlled by the density of the culture []. Density-dependent regulation of lux gene expression has been shown to require a locus consisting of the luxR and luxI genes. In these and other Gram-negative bacteria, N-(3-oxohexanoyl)-L-homoserine lactone (OHHL) acts as the autoinducer by binding to transcriptional regulatory proteins and activating them []. OHHL and related molecules, such as N-butanoyl- (BHL), N-hexanoyl- (HHL) and N-oxododecanoyl- (PAI) homoserine lactones, are produced by a family of proteins that share a high level of sequence similarity. Proteins which currently members of this family include: luxI from V. fischeri. ahyI and asaI from Aeromonas species, which synthesize BHL and whose targets are ahyR and asaR respectively. carI from Erwinia carotovora. The target of OHHL is carR which activates genes involved in the biosynthesis of carbapenem antibiotics. eagI from Enterobacter agglomerans. The target of OHHL is not yet known. esaI from Erwinia stewartii. expI from Erwinia carotovora. lasI from Pseudomonas aeruginosa, which synthesizes PAI and whose target is lasR which activates the transcription of the elastase gene. rhlI (or vsmI) from P. aeruginosa, which synthesizes BHL and HHL and whose target is rhlR. swrI from Serratia liquefaciens, which synthesizes BHL. yenI from Yersinia enterocolitica. ; GO: 0007165 signal transduction; PDB: 3P2H_A 3P2F_A 1KZF_A 1K4J_A 1RO5_A.
Probab=89.13 E-value=2.2 Score=44.56 Aligned_cols=82 Identities=17% Similarity=0.110 Sum_probs=63.2
Q ss_pred cceEEEEEeeCCeEEEEEEEEEeC---------------------CeeEEEeeeEeecCccC------CChhHHHHHHHH
Q 002334 801 GGMYCAILTVNSSVVSAGILRVFG---------------------QEVAELPLVATSKINHG------KGYFQLLFACIE 853 (935)
Q Consensus 801 ~GfY~~VL~~~~~vVsaA~lrv~g---------------------~~vAElplVAT~~~yRg------qG~gr~L~~~IE 853 (935)
.-.|.+++. +|+++|+++|.... .+++|+=+++++++.++ .-+...|+.++-
T Consensus 44 ~~~ylv~~~-~g~v~g~~RLlptt~p~ML~~~F~~ll~~~~~p~~~~vwE~SRf~v~~~~~~~~~~~~~~~~~~L~~~~~ 122 (182)
T PF00765_consen 44 DAVYLVALD-DGRVVGCARLLPTTGPYMLSDVFPHLLPDGPAPRSPDVWELSRFCVDPDRRRSRAGSRSPVTMELLLGMV 122 (182)
T ss_dssp T-EEEEEEE-TTEEEEEEEEEETTS--HHHHCTGGGHTTS---SSTTEEEEEEEEE-HCCCHHCHSCC-THHHHHHHHHH
T ss_pred CCeEEEEEE-CCEEEEEeeeccCCCcchhhhHHHHHhCCCCCCCCCcceeeeEEEEcccccccccccccHHHHHHHHHHH
Confidence 446877765 59999999987543 57999999999988532 236789999999
Q ss_pred HHhhhcCccEEEecChhhhHHHHHhccCcEE
Q 002334 854 KLLSFLRVKSIVLPAAEEAESIWTDKFGFKK 884 (935)
Q Consensus 854 ~~L~~lgV~~LvLpA~~~a~~~w~~kfGF~~ 884 (935)
+.+.+.|++.++.-+..-.+.++.+ +||..
T Consensus 123 e~a~~~gi~~~v~V~~~~~~r~l~r-~G~~~ 152 (182)
T PF00765_consen 123 EFALSNGIRHIVGVVDPAMERILRR-AGWPV 152 (182)
T ss_dssp HHHHCTT-SEEEEEEEHHHHHHHHH-CT-EE
T ss_pred HHHHHCCCCEEEEEEChHHHHHHHH-cCCce
Confidence 9999999999998888777888877 99874
No 119
>PF12861 zf-Apc11: Anaphase-promoting complex subunit 11 RING-H2 finger
Probab=88.51 E-value=0.22 Score=46.21 Aligned_cols=59 Identities=19% Similarity=0.349 Sum_probs=35.3
Q ss_pred CcccccccCccCCcCc--ccccCCCCceecccCCCcccccccCC-CCCCCCCCcccccccccc
Q 002334 543 LGIICHCCNSEVSPSQ--FEAHADGGNLLPCDGCPRAFHKECAS-LSSIPQGDWYCKYCQNMF 602 (935)
Q Consensus 543 ~~i~C~~C~~eiSpS~--FE~hadgG~Ll~CD~Cp~afH~~CL~-L~~vPeg~W~Cp~C~~~~ 602 (935)
+++.|++|...+.... -..-.|.-.++.+ .|.+.||..|+. .-+-....-.||.|++.+
T Consensus 20 ~dd~CgICr~~fdg~Cp~Ck~Pgd~Cplv~g-~C~H~FH~hCI~kWl~~~~~~~~CPmCR~~w 81 (85)
T PF12861_consen 20 NDDVCGICRMPFDGCCPDCKFPGDDCPLVWG-KCSHNFHMHCILKWLSTQSSKGQCPMCRQPW 81 (85)
T ss_pred CCCceeeEecccccCCCCccCCCCCCceeec-cCccHHHHHHHHHHHccccCCCCCCCcCCee
Confidence 4789999997543111 0000122234444 499999999994 112223456999999764
No 120
>PRK13834 putative autoinducer synthesis protein; Provisional
Probab=88.48 E-value=2.8 Score=44.67 Aligned_cols=118 Identities=18% Similarity=0.106 Sum_probs=78.1
Q ss_pred HHHHHHHHhhhhcCCCcccCCCCCCccccccccccCCCcee-cceEEEEEeeCCeEEEEEEEEEe---------------
Q 002334 760 LLLSQAVAIFHDCFDPIVDSISGRDLIPSMVYGRNLRGQEF-GGMYCAILTVNSSVVSAGILRVF--------------- 823 (935)
Q Consensus 760 skLa~AL~If~EcF~Pivd~rSgrDLIp~MVygr~~~~~~f-~GfY~~VL~~~~~vVsaA~lrv~--------------- 823 (935)
..+.++...=++.|. +. =|=++ +. --|.+....|- .-.|.+....+|++||+++|--.
T Consensus 16 ~~l~~~~rLR~~VF~---~e-lgW~~-~~-~~g~E~D~yD~~~~~yll~~~~~g~vvG~~RLlptt~p~ml~~~fp~l~~ 89 (207)
T PRK13834 16 SLLKQMHRLRARVFG---GR-LGWDV-SI-TDGEERDQFDDLKPTYILAISDSGRVAGCARLLPAIGPTMLAQVFPQLLP 89 (207)
T ss_pred HHHHHHHHHHHHHhc---cc-cCCCC-CC-CCCcCccCCCCCCCEEEEEEeCCCeEEEEEecccCCCcchhhhhcHHhcC
Confidence 345666666666663 11 12222 11 12334444443 34566666678899999987211
Q ss_pred ------CCeeEEEeeeEeecCcc---CCC----hhHHHHHHHHHHhhhcCccEEEecChhhhHHHHHhccCcEE
Q 002334 824 ------GQEVAELPLVATSKINH---GKG----YFQLLFACIEKLLSFLRVKSIVLPAAEEAESIWTDKFGFKK 884 (935)
Q Consensus 824 ------g~~vAElplVAT~~~yR---gqG----~gr~L~~~IE~~L~~lgV~~LvLpA~~~a~~~w~~kfGF~~ 884 (935)
..+++|+-++|++++++ +.+ +...|+.++-+.+...|+++++.-.......++.+ +||..
T Consensus 90 ~~~~~~~~~v~E~SRf~V~~~~~~~~~~~~~~~~~~~L~~~~~~~a~~~Gi~~~~~v~~~~~~r~l~r-~G~~~ 162 (207)
T PRK13834 90 AGRLNAHPAMIESSRFCVDTALAEGRGGGQLHEATLTMFAGIIEWSMANGYTEIVTATDLRFERILAR-AGWPM 162 (207)
T ss_pred CCCCCCCCCEEEEeeeEEcccccccccccccCHHHHHHHHHHHHHHHHCCCCEEEEEECHHHHHHHHH-cCCCe
Confidence 25799999999999863 222 55789999999999999999987777666777755 88753
No 121
>PF12678 zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This domain constitutes a conserved region found in proteins that participate in diverse functions relevant to chromosome metabolism and cell cycle control [].The domain contains 8 cysteine/ histidine residues which are proposed to be the conserved residues involved in zinc binding.; PDB: 4A0C_D 4A0L_I 4A0K_B 2ECL_A 1LDK_C 3RTR_F 3DQV_Y 1U6G_B 1LDJ_B 2HYE_D ....
Probab=88.41 E-value=0.12 Score=46.24 Aligned_cols=54 Identities=20% Similarity=0.375 Sum_probs=32.9
Q ss_pred cccccccCccCCcCcccccCCCC-ceecccCCCcccccccCCCCCCCCCCccccccc
Q 002334 544 GIICHCCNSEVSPSQFEAHADGG-NLLPCDGCPRAFHKECASLSSIPQGDWYCKYCQ 599 (935)
Q Consensus 544 ~i~C~~C~~eiSpS~FE~hadgG-~Ll~CD~Cp~afH~~CL~L~~vPeg~W~Cp~C~ 599 (935)
.+.|.+|...+.....+.-+++. -.+.=..|++.||..|+. .|-.....||.|+
T Consensus 19 ~d~C~IC~~~l~~~~~~~~~~~~~~~i~~~~C~H~FH~~Ci~--~Wl~~~~~CP~CR 73 (73)
T PF12678_consen 19 DDNCAICREPLEDPCPECQAPQDECPIVWGPCGHIFHFHCIS--QWLKQNNTCPLCR 73 (73)
T ss_dssp CSBETTTTSBTTSTTCCHHHCTTTS-EEEETTSEEEEHHHHH--HHHTTSSB-TTSS
T ss_pred CCcccccChhhhChhhhhcCCccccceEecccCCCEEHHHHH--HHHhcCCcCCCCC
Confidence 44599999877443333333332 223334699999999994 4444455899985
No 122
>COG3981 Predicted acetyltransferase [General function prediction only]
Probab=87.58 E-value=1 Score=46.83 Aligned_cols=67 Identities=16% Similarity=0.152 Sum_probs=53.1
Q ss_pred eEEEEEeeCCeEEEEEEEEEeCCeeEEEe-----eeEeecCccCCChhHHHHHHHHHHhhhcCccEEEecChhh
Q 002334 803 MYCAILTVNSSVVSAGILRVFGQEVAELP-----LVATSKINHGKGYFQLLFACIEKLLSFLRVKSIVLPAAEE 871 (935)
Q Consensus 803 fY~~VL~~~~~vVsaA~lrv~g~~vAElp-----lVAT~~~yRgqG~gr~L~~~IE~~L~~lgV~~LvLpA~~~ 871 (935)
.|-+|-+ ++++||.-.||-.=.+ ..++ --+|+|+.||+||++.++.-..+.++.+|++.+.+-+..+
T Consensus 70 ~y~~v~~-d~~ivG~i~lRh~Ln~-~ll~~gGHIGY~VrPseR~KGYA~emLkl~L~~ar~lgi~~Vlvtcd~d 141 (174)
T COG3981 70 TYWAVDE-DGQIVGFINLRHQLND-FLLEEGGHIGYSVRPSERRKGYAKEMLKLALEKARELGIKKVLVTCDKD 141 (174)
T ss_pred eEEEEec-CCcEEEEEEeeeecch-HHHhcCCcccceeChhhhccCHHHHHHHHHHHHHHHcCCCeEEEEeCCC
Confidence 5555545 8999999999865432 2222 1359999999999999999999999999999998887754
No 123
>cd04264 DUF619-NAGS DUF619 domain of various N-acetylglutamate Synthases of the fungal arginine-biosynthetic pathway and urea cycle found in humans and fish. DUF619-NAGS: This family includes the DUF619 domain of various N-acetylglutamate synthases (NAGS) of the urea cycle found in humans and fish, the DUF619 domain of the NAGS of the fungal arginine-biosynthetic pathway (FABP), as well as the DUF619 domain present in C-terminal of a NAG kinase-like domain in a limited number of predicted NAGSs found in bacteria and Dictyostelium. Ureogenic NAGS is a mitochondrial enzyme catalyzing the formation of NAG from acetylcoenzyme A and L-glutamate. NAGS is an essential allosteric activator of carbamylphosphate synthase I, the first and rate limiting enzyme of the urea cycle. Domain architecture of ureogenic and fungal NAGS consists of an N-terminal NAG kinase-like domain and a C-terminal DUF619 domain. The DUF619 domain function has yet to be characterized.
Probab=85.94 E-value=1.7 Score=41.38 Aligned_cols=48 Identities=21% Similarity=0.234 Sum_probs=41.4
Q ss_pred eeCCeEEEEEEEEEeC--CeeEEEeeeEeecCccCCChhHHHHHHHHHHh
Q 002334 809 TVNSSVVSAGILRVFG--QEVAELPLVATSKINHGKGYFQLLFACIEKLL 856 (935)
Q Consensus 809 ~~~~~vVsaA~lrv~g--~~vAElplVAT~~~yRgqG~gr~L~~~IE~~L 856 (935)
+.++...++|.+..-+ .+++-|-.+|+.+..||+|+++.|+++|-+..
T Consensus 14 y~~e~y~~~aIvt~~~~~~~~~yLdKfaV~~~~~g~gvad~vf~~i~~d~ 63 (99)
T cd04264 14 YLSEGYNAAAIVTYEGVNNGVPYLDKFAVSSSAQGEGTSDALWRRLRRDF 63 (99)
T ss_pred EEeCCceEEEEEeccCCCCCceEEEEEEEchhhhhcChHHHHHHHHHhhC
Confidence 5567788888887654 58999999999999999999999999998774
No 124
>PF13639 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 1IYM_A 2EP4_A 2ECT_A 2JRJ_A 2ECN_A 2ECM_A 3NG2_A 2EA6_A ....
Probab=84.92 E-value=0.084 Score=42.13 Aligned_cols=44 Identities=23% Similarity=0.573 Sum_probs=27.9
Q ss_pred ccccccCccCCcCcccccCCCCceecccCCCcccccccCCCCCCCCCCccccccc
Q 002334 545 IICHCCNSEVSPSQFEAHADGGNLLPCDGCPRAFHKECASLSSIPQGDWYCKYCQ 599 (935)
Q Consensus 545 i~C~~C~~eiSpS~FE~hadgG~Ll~CD~Cp~afH~~CL~L~~vPeg~W~Cp~C~ 599 (935)
+.|.+|.+.+.. +..++... |++.||..|+. .|-.....||.|+
T Consensus 1 d~C~IC~~~~~~--------~~~~~~l~-C~H~fh~~Ci~--~~~~~~~~CP~CR 44 (44)
T PF13639_consen 1 DECPICLEEFED--------GEKVVKLP-CGHVFHRSCIK--EWLKRNNSCPVCR 44 (44)
T ss_dssp -CETTTTCBHHT--------TSCEEEET-TSEEEEHHHHH--HHHHHSSB-TTTH
T ss_pred CCCcCCChhhcC--------CCeEEEcc-CCCeeCHHHHH--HHHHhCCcCCccC
Confidence 368999976542 34455444 99999999994 2222234899885
No 125
>PF07897 DUF1675: Protein of unknown function (DUF1675); InterPro: IPR012463 The members of this family are sequences derived from hypothetical plant proteins of unknown function. One member of this family (Q9SFV5 from SWISSPROT) is annotated as a putative RNA-binding protein, but no evidence was found to support this.
Probab=83.26 E-value=1.7 Score=48.56 Aligned_cols=66 Identities=17% Similarity=0.285 Sum_probs=44.6
Q ss_pred chhHHhhhcCCCCCceEEEecC--CcceeeEEEEeCC------eEEeeCcCCCCceeeCcchhhhccccc-cCCcccce
Q 002334 226 MTVTELFETGLLDGVSVVYMGG--IKASGLRGIIRDG------GILCSCSLCNGCRVIPPSKFEIHACKQ-YRRASQYI 295 (935)
Q Consensus 226 ~~vk~Ll~tglleg~~V~Y~~~--~~~~~l~G~i~~~------GilC~C~~C~~~~v~s~s~FE~HAG~~-~~~p~~~I 295 (935)
.+...-..+.+++.+|-.+-.. .+.....|+++.- -|+|-|- -.-+||.+|=.|||.. .-||-.||
T Consensus 209 ~~~~~~~~~~~~~~mp~v~t~g~gpng~~i~g~ly~y~~~~~v~i~c~ch----g~~~~~~efv~h~~~~~~~~p~~hi 283 (284)
T PF07897_consen 209 TNSGGDGSRNMMEDMPCVSTTGDGPNGKRIEGFLYKYGKGEEVRIVCVCH----GSFLSPAEFVKHAGGGDVANPLRHI 283 (284)
T ss_pred ccccccccccccccCCceeeccCCCCCceeeEEEEEecCCCeEEEEEEec----CCCCCHHHHHHhcCCCCcCCchhcc
Confidence 3444444555667777555432 1345556766544 2888886 4689999999999987 45899998
No 126
>PF07227 DUF1423: Protein of unknown function (DUF1423); InterPro: IPR004082 A total of 715 potential protein-coding genes have been identified in the nucleotide sequence of Arabidopsis thaliana chromosome 5, with an average gene density of 1 gene per 4001 bp []. Amongst the gene products is a well-conserved family of 130.7kDa proteins that share no sequence similarity with any other known proteins, other than in plants. The sequences are characterised by an N-terminal domain of variable length, a central cysteine-rich region and a relatively acidic C-terminal domain. The sequences may possess a PHD finger.
Probab=80.69 E-value=1.8 Score=50.85 Aligned_cols=35 Identities=29% Similarity=0.665 Sum_probs=27.9
Q ss_pred ceeccCCCCCCCCCCCCceeeCCCCCCcCCCCCCCCCc
Q 002334 647 CLLCRGCDFSKSGFGPRTILLCDQCEREFHVGCLKKHK 684 (935)
Q Consensus 647 C~iC~~~df~~sgf~~~tLL~CDqCdr~YHv~CL~p~~ 684 (935)
|.+|.+.|+.. ++-.||.||.|..|.|++|.=.+.
T Consensus 131 C~iC~kfD~~~---n~~~Wi~Cd~CgH~cH~dCALr~~ 165 (446)
T PF07227_consen 131 CCICSKFDDNK---NTCSWIGCDVCGHWCHLDCALRHE 165 (446)
T ss_pred ccccCCcccCC---CCeeEEeccCCCceehhhhhcccc
Confidence 88898877653 456799999999999999965443
No 127
>PF02474 NodA: Nodulation protein A (NodA); InterPro: IPR003484 Rhizobial nodulation (Nod) factors are signalling molecules secreted by root-nodulating rhizobia in response to flavanoids excreted by the host plant. They induce various symbiotic responses on the roots of the leguminous host plant at low concentrations, and are required for successful infection. Rhizobial Nod factors are lipo-chitooligosaccharides carrying various substituents which are important determinants of host specificity []. NodA is an N-acyl transferase which specifies the transfer of an acyl chain to the oligosaccharide backbone of Nod factor. Allelic variation of the nodA gene can contribute to the determination of host range [].; GO: 0016746 transferase activity, transferring acyl groups
Probab=79.84 E-value=2.8 Score=43.73 Aligned_cols=51 Identities=20% Similarity=0.050 Sum_probs=44.8
Q ss_pred eEEEeeeEeecCccCCChhHHHHHHHHHHhhhcCccEEEecChhhhHHHHHh
Q 002334 827 VAELPLVATSKINHGKGYFQLLFACIEKLLSFLRVKSIVLPAAEEAESIWTD 878 (935)
Q Consensus 827 vAElplVAT~~~yRgqG~gr~L~~~IE~~L~~lgV~~LvLpA~~~a~~~w~~ 878 (935)
+||+-+.||+++.+|.|+++.+ ..+--.|++|||..-|---+......+++
T Consensus 85 VaElGLygVRpDLEGlGi~hs~-r~m~PvLq~LgVPF~FGtVR~al~~Hv~R 135 (196)
T PF02474_consen 85 VAELGLYGVRPDLEGLGISHSM-RVMYPVLQELGVPFGFGTVRHALRNHVER 135 (196)
T ss_pred EEEEEEEEeeccccccccchhh-hhhhhHHHhcCCCeecccchHHHHHHHHH
Confidence 8999999999999999999976 68899999999998887777777777766
No 128
>PF14446 Prok-RING_1: Prokaryotic RING finger family 1
Probab=79.20 E-value=1.2 Score=38.11 Aligned_cols=34 Identities=26% Similarity=0.833 Sum_probs=29.6
Q ss_pred CcccccccCccCCcCcccccCCCCceecccCCCcccccccCC
Q 002334 543 LGIICHCCNSEVSPSQFEAHADGGNLLPCDGCPRAFHKECAS 584 (935)
Q Consensus 543 ~~i~C~~C~~eiSpS~FE~hadgG~Ll~CD~Cp~afH~~CL~ 584 (935)
.+-.|..|++.+. ++++++.|..|...||..|..
T Consensus 4 ~~~~C~~Cg~~~~--------~~dDiVvCp~CgapyHR~C~~ 37 (54)
T PF14446_consen 4 EGCKCPVCGKKFK--------DGDDIVVCPECGAPYHRDCWE 37 (54)
T ss_pred cCccChhhCCccc--------CCCCEEECCCCCCcccHHHHh
Confidence 4568999998776 589999999999999999983
No 129
>TIGR03019 pepcterm_femAB FemAB-related protein, PEP-CTERM system-associated. Members of this protein family are found always as part of extended exopolysaccharide biosynthesis loci in bacteria. In nearly every case, these loci contain determinants for the processing of the PEP-CTERM proposed C-terminal protein sorting signal. This family shows remote, local sequence similarity to the FemAB protein family (see pfam02388), whose members
Probab=78.58 E-value=5.9 Score=44.37 Aligned_cols=81 Identities=9% Similarity=0.028 Sum_probs=62.9
Q ss_pred EEEEe-eCCeEEEEEEEEEeCCeeEEEeeeEeecCccCCChhHHHHHHHHHHhhhcCccEEEecChhh--hHHHHHhccC
Q 002334 805 CAILT-VNSSVVSAGILRVFGQEVAELPLVATSKINHGKGYFQLLFACIEKLLSFLRVKSIVLPAAEE--AESIWTDKFG 881 (935)
Q Consensus 805 ~~VL~-~~~~vVsaA~lrv~g~~vAElplVAT~~~yRgqG~gr~L~~~IE~~L~~lgV~~LvLpA~~~--a~~~w~~kfG 881 (935)
.++++ .+|++|+++.+..+++ .+.....++.++|++.+-+-.|+-.+.+.+.+.|++++-+..... -.-.|+++||
T Consensus 197 l~~a~~~~g~~va~~l~~~~~~-~~~~~~~g~~~~~~~~~~~~lL~w~~i~~a~~~G~~~fDfG~s~~~~G~~~FK~~~G 275 (330)
T TIGR03019 197 VLTVRLGDGVVASAVLSFYFRD-EVLPYYAGGLREARDVAANDLMYWELMRRACERGLRVFDFGRSKRGTGPFKFKKNWG 275 (330)
T ss_pred EEEEEeCCCCEEEEEEEEEeCC-EEEEEeccChHHHHhhChHHHHHHHHHHHHHHCCCcEEEcCCCCCCCccHHHHhcCC
Confidence 34456 6899999888766664 455557889999999999999999999999999999999876433 2234666789
Q ss_pred cEEcC
Q 002334 882 FKKID 886 (935)
Q Consensus 882 F~~i~ 886 (935)
|+...
T Consensus 276 ~~~~~ 280 (330)
T TIGR03019 276 FEPQP 280 (330)
T ss_pred Ceecc
Confidence 98654
No 130
>cd04265 DUF619-NAGS-U DUF619 domain of various N-acetylglutamate Synthases (NAGS) of the urea (U) cycle of humans and fish. This family includes the DUF619 domain of various N-acetylglutamate synthases (NAGS) of the urea cycle found in humans and fish, the DUF619 domain of the NAGS of the fungal arginine-biosynthetic pathway (FABP), as well as the DUF619 domain present in C-terminal of a NAG kinase-like domain in a limited number of predicted NAGSs found in bacteria and Dictyostelium. Ureogenic NAGS is a mitochondrial enzyme catalyzing the formation of NAG from acetylcoenzyme A and L-glutamate. NAGS is an essential allosteric activator of carbamylphosphate synthase I, the first and rate limiting enzyme of the urea cycle. Domain architecture of ureogenic and fungal NAGS consists of an N-terminal NAG kinase-like domain and a C-terminal DUF619 domain. The DUF619 domain function has yet to be characterized.
Probab=76.79 E-value=5.1 Score=38.25 Aligned_cols=48 Identities=19% Similarity=0.165 Sum_probs=38.1
Q ss_pred eeCCeEEEEEEEEEeC-CeeEEEeeeEeecCccCCChhHHHHHHHHHHh
Q 002334 809 TVNSSVVSAGILRVFG-QEVAELPLVATSKINHGKGYFQLLFACIEKLL 856 (935)
Q Consensus 809 ~~~~~vVsaA~lrv~g-~~vAElplVAT~~~yRgqG~gr~L~~~IE~~L 856 (935)
+.++..=++|.+..-. .+++-|-.+|+.+..||+|+++.|+.+|-+..
T Consensus 15 y~~e~y~~~aivt~~~~~~~~yLdKfaV~~~~~g~gv~d~vf~~i~~d~ 63 (99)
T cd04265 15 YLSEGYNAAAIVTNEEVDGVPYLDKFAVSSSAQGEGTGEALWRRLRRDF 63 (99)
T ss_pred EEeCCCcEEEEEeccCCCCceEEEEEEEchhhhhcChHHHHHHHHHhhC
Confidence 4445555666665433 47999999999999999999999999998874
No 131
>PF11793 FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A.
Probab=76.22 E-value=1.8 Score=38.58 Aligned_cols=52 Identities=23% Similarity=0.382 Sum_probs=19.9
Q ss_pred ccccccCccCCcCcccccCCCCceeccc--CCCcccccccCC--C---CCC----CCCCcccccccccc
Q 002334 545 IICHCCNSEVSPSQFEAHADGGNLLPCD--GCPRAFHKECAS--L---SSI----PQGDWYCKYCQNMF 602 (935)
Q Consensus 545 i~C~~C~~eiSpS~FE~hadgG~Ll~CD--~Cp~afH~~CL~--L---~~v----Peg~W~Cp~C~~~~ 602 (935)
..|.+|...+.. .+.-..+.|+ .|...||..||. + +.- .--.+.||.|...+
T Consensus 3 ~~C~IC~~~~~~------~~~~p~~~C~n~~C~~~fH~~CL~~wf~~~~~~~~~~~~~~G~CP~C~~~i 65 (70)
T PF11793_consen 3 LECGICYSYRLD------DGEIPDVVCPNPSCGKKFHLLCLSEWFLSLEKSRQSFIPIFGECPYCSSPI 65 (70)
T ss_dssp -S-SSS--SS-T------T-----B--S-TT----B-SGGGHHHHHHHHSSS-TTT--EEE-TTT-SEE
T ss_pred CCCCcCCcEecC------CCCcCceEcCCcccCCHHHHHHHHHHHHHcccCCeeecccccCCcCCCCee
Confidence 569999865431 0222348898 899999999994 1 111 11236799998754
No 132
>KOG4628 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=71.74 E-value=2.9 Score=47.91 Aligned_cols=46 Identities=24% Similarity=0.582 Sum_probs=31.6
Q ss_pred ccccccCccCCcCcccccCCCCceecccCCCcccccccCC--CCCCCCCCcccccccccc
Q 002334 545 IICHCCNSEVSPSQFEAHADGGNLLPCDGCPRAFHKECAS--LSSIPQGDWYCKYCQNMF 602 (935)
Q Consensus 545 i~C~~C~~eiSpS~FE~hadgG~Ll~CD~Cp~afH~~CL~--L~~vPeg~W~Cp~C~~~~ 602 (935)
+.|.+|.+.+. .|+ .+-==-|.+.||..|++ |..+ .-+||-|++.+
T Consensus 230 ~~CaIClEdY~--------~Gd-klRiLPC~H~FH~~CIDpWL~~~---r~~CPvCK~di 277 (348)
T KOG4628|consen 230 DTCAICLEDYE--------KGD-KLRILPCSHKFHVNCIDPWLTQT---RTFCPVCKRDI 277 (348)
T ss_pred ceEEEeecccc--------cCC-eeeEecCCCchhhccchhhHhhc---CccCCCCCCcC
Confidence 79999997654 233 33224567999999997 3222 34799999754
No 133
>KOG1473 consensus Nucleosome remodeling factor, subunit NURF301/BPTF [Chromatin structure and dynamics; Transcription]
Probab=71.66 E-value=2.1 Score=54.80 Aligned_cols=45 Identities=27% Similarity=0.742 Sum_probs=39.4
Q ss_pred CcceeccCCCCCCCCCCCCceeeCCCCCCcCCCCCCCCCcCCccCCCCCCCceecCCcc
Q 002334 645 SGCLLCRGCDFSKSGFGPRTILLCDQCEREFHVGCLKKHKMADLRELPKGKWFCCMDCS 703 (935)
Q Consensus 645 ~~C~iC~~~df~~sgf~~~tLL~CDqCdr~YHv~CL~p~~~~~L~evP~g~WfCc~~C~ 703 (935)
.+|.+|.+ .+.++.|..|++.||..|+.+ |+.++|...|-| ..|.
T Consensus 345 dhcrf~~d---------~~~~lc~Et~prvvhlEcv~h----P~~~~~s~~~e~-evc~ 389 (1414)
T KOG1473|consen 345 DHCRFCHD---------LGDLLCCETCPRVVHLECVFH----PRFAVPSAFWEC-EVCN 389 (1414)
T ss_pred ccccccCc---------ccceeecccCCceEEeeecCC----ccccCCCccchh-hhhh
Confidence 46999985 468999999999999999997 788999999999 7774
No 134
>KOG2535 consensus RNA polymerase II elongator complex, subunit ELP3/histone acetyltransferase [Chromatin structure and dynamics; Transcription]
Probab=70.10 E-value=6.1 Score=45.19 Aligned_cols=66 Identities=17% Similarity=0.280 Sum_probs=45.8
Q ss_pred EEEEEeCCeeEEEeeeEeec-CccCCChhHHHHHHHHHHhhhc-CccEEEecChhhhHHHHHhccCcEEcCH
Q 002334 818 GILRVFGQEVAELPLVATSK-INHGKGYFQLLFACIEKLLSFL-RVKSIVLPAAEEAESIWTDKFGFKKIDP 887 (935)
Q Consensus 818 A~lrv~g~~vAElplVAT~~-~yRgqG~gr~L~~~IE~~L~~l-gV~~LvLpA~~~a~~~w~~kfGF~~i~~ 887 (935)
--|||+|.- +|.-+-++ .||.||||.+||++.|+.+++- |-.++-+-+-......|.+ |||..-++
T Consensus 480 RELHVYGs~---vpv~~rDp~KfQHQG~GtLLmeEAERIAr~EHgS~KiavISGVGtR~YY~k-lGY~LdGP 547 (554)
T KOG2535|consen 480 RELHVYGSV---VPVHSRDPTKFQHQGFGTLLMEEAERIAREEHGSGKIAVISGVGTRNYYRK-LGYELDGP 547 (554)
T ss_pred eeeeeccee---eecccCCchhhhhcchhhHHHHHHHHHHHHhcCCCceEEEeccchHHHHHh-hCeeecCh
Confidence 345666642 33333333 4999999999999999999865 4456666555566667776 99987654
No 135
>PF01233 NMT: Myristoyl-CoA:protein N-myristoyltransferase, N-terminal domain; InterPro: IPR022676 Myristoyl-CoA:protein N-myristoyltransferase (2.3.1.97 from EC) (Nmt) [] is the enzyme responsible for transferring a myristate group on the N-terminal glycine of a number of cellular eukaryotics and viral proteins. Nmt is a monomeric protein of about 50 to 60kDa whose sequence appears to be well conserved. The N and C-terminal domains of NMT are structurally similar, each adopting an acyl-CoA N-acyltransferase-like fold. This entry represents the N-terminal region. ; GO: 0004379 glycylpeptide N-tetradecanoyltransferase activity; PDB: 2P6G_B 2P6F_F 2P6E_A 1IIC_A 1IID_A 2NMT_A 4A33_A 3H5Z_A 4A2Z_A 2WSA_A ....
Probab=66.35 E-value=47 Score=34.63 Aligned_cols=111 Identities=14% Similarity=0.230 Sum_probs=72.3
Q ss_pred cCcceeEccCCCCChhhHHHHHHHHHhhhhcCCCcccCCCCCCccccccccccC-----CCceecceEEEEEee--CCeE
Q 002334 742 IDVRWRLLSGKAATPETRLLLSQAVAIFHDCFDPIVDSISGRDLIPSMVYGRNL-----RGQEFGGMYCAILTV--NSSV 814 (935)
Q Consensus 742 ~dikWqLLsgk~~s~e~~skLa~AL~If~EcF~Pivd~rSgrDLIp~MVygr~~-----~~~~f~GfY~~VL~~--~~~v 814 (935)
.+|.|..+. ..+...|.+.-..+.|-+.- |. |-.-..-|+.+| .--+|.-.|.+.+.. ++++
T Consensus 22 ~gF~W~~~d-----l~d~~~l~ely~lL~~nYVE--Dd----d~~fRf~YS~efL~WaL~pPg~~~~whiGVR~~~~~kL 90 (162)
T PF01233_consen 22 DGFEWSTLD-----LNDDEELKELYELLNENYVE--DD----DNMFRFDYSKEFLKWALKPPGWKKEWHIGVRVKSSKKL 90 (162)
T ss_dssp TTEEEEE-------TTSHHHHHHHHHHHHHHSSB--TT----TSSEEE---HHHHHHHHTSTT--GGGEEEEEETTTTEE
T ss_pred CCCEEEecC-----CCCHHHHHHHHHHHHhcCcc--CC----cceEEeeCCHHHHhheeeCcCCccceEEEEEECCCCEE
Confidence 368898763 33456677788888888832 11 222224555553 333445555666654 5788
Q ss_pred EE-----EEEEEEeCC--eeEEEeeeEeecCccCCChhHHHHHHHHHHhhhcCccE
Q 002334 815 VS-----AGILRVFGQ--EVAELPLVATSKINHGKGYFQLLFACIEKLLSFLRVKS 863 (935)
Q Consensus 815 Vs-----aA~lrv~g~--~vAElplVAT~~~yRgqG~gr~L~~~IE~~L~~lgV~~ 863 (935)
|| -+.+||.+. ..+||=++.+++.+|.+++.=.|+.+|=+.+-..||-.
T Consensus 91 vgfIsaip~~irv~~~~~~~~eINFLCVhKklRskrlAPvLIkEItRRvn~~gI~q 146 (162)
T PF01233_consen 91 VGFISAIPATIRVRDKVIKMVEINFLCVHKKLRSKRLAPVLIKEITRRVNLQGIWQ 146 (162)
T ss_dssp EEEEEEEEEEEEETTEEEEEEEEEEEEE-GGGTTSSHHHHHHHHHHHHHHTTT--E
T ss_pred EEEEccceEEEEEeeeEeeeeeEEEEeecHhHhhcCCcHHHHHHHHHHhhhcCcee
Confidence 77 357888885 69999999999999999999999999999988888754
No 136
>KOG4135 consensus Predicted phosphoglucosamine acetyltransferase [Carbohydrate transport and metabolism]
Probab=64.10 E-value=15 Score=37.82 Aligned_cols=58 Identities=12% Similarity=0.202 Sum_probs=39.4
Q ss_pred eEEEeeeEeecCccCCChhHHHHHHHHHHhhh-cCccEEEecC--hhh-hHHHHHhccCcEEc
Q 002334 827 VAELPLVATSKINHGKGYFQLLFACIEKLLSF-LRVKSIVLPA--AEE-AESIWTDKFGFKKI 885 (935)
Q Consensus 827 vAElplVAT~~~yRgqG~gr~L~~~IE~~L~~-lgV~~LvLpA--~~~-a~~~w~~kfGF~~i 885 (935)
++|+-+.---|..||+|+|+..|.++...+.+ +++-+...-. +.. ...++.+ |+|.-+
T Consensus 107 ~gE~EvMIAEP~~RgKG~G~eav~~ml~y~~s~l~l~Ky~vkig~~nk~sl~lFkk-~~f~q~ 168 (185)
T KOG4135|consen 107 TGEVEVMIAEPRGRGKGIGTEAVRAMLAYAYSVLKLDKYEVKIGMDNKPSLRLFKK-FLFTQV 168 (185)
T ss_pred eeeEEEEEecccccCCCccHHHHHHHHHHHHHHhhhheEEEEecCCCchHHHHHHH-hhheee
Confidence 45666666779999999999999999888654 4555554443 222 2344444 998744
No 137
>PF15446 zf-PHD-like: PHD/FYVE-zinc-finger like domain
Probab=61.65 E-value=4.4 Score=42.14 Aligned_cols=35 Identities=20% Similarity=0.555 Sum_probs=26.6
Q ss_pred ceeccCCCCCCCCCCCCceeeCCCCCCcCCCCCCCCCc
Q 002334 647 CLLCRGCDFSKSGFGPRTILLCDQCEREFHVGCLKKHK 684 (935)
Q Consensus 647 C~iC~~~df~~sgf~~~tLL~CDqCdr~YHv~CL~p~~ 684 (935)
|..|+..+ .....+.|+.|..|-.+||..||.+..
T Consensus 2 C~~C~~~g---~~~~kG~Lv~CQGCs~sYHk~CLG~Rs 36 (175)
T PF15446_consen 2 CDTCGYEG---DDRNKGPLVYCQGCSSSYHKACLGPRS 36 (175)
T ss_pred cccccCCC---CCccCCCeEEcCccChHHHhhhcCCcc
Confidence 77785421 123467899999999999999998753
No 138
>PF14446 Prok-RING_1: Prokaryotic RING finger family 1
Probab=60.53 E-value=5.7 Score=34.14 Aligned_cols=35 Identities=23% Similarity=0.564 Sum_probs=27.7
Q ss_pred CcceeccCCCCCCCCCCCCceeeCCCCCCcCCCCCCCCCc
Q 002334 645 SGCLLCRGCDFSKSGFGPRTILLCDQCEREFHVGCLKKHK 684 (935)
Q Consensus 645 ~~C~iC~~~df~~sgf~~~tLL~CDqCdr~YHv~CL~p~~ 684 (935)
..|.+|++.- ...+.++.|..|...||-.|....+
T Consensus 6 ~~C~~Cg~~~-----~~~dDiVvCp~CgapyHR~C~~~~g 40 (54)
T PF14446_consen 6 CKCPVCGKKF-----KDGDDIVVCPECGAPYHRDCWEKAG 40 (54)
T ss_pred ccChhhCCcc-----cCCCCEEECCCCCCcccHHHHhhCC
Confidence 4599999751 1367899999999999999986543
No 139
>PF01853 MOZ_SAS: MOZ/SAS family; InterPro: IPR002717 Moz is a monocytic leukemia Zn_finger protein and the SAS protein from Saccharomyces cerevisiae (Baker's yeast) is involved in silencing the Hmr locus. These proteins were reported to be homologous to acetyltransferases [] but this similarity is not supported by standard sequence analysis.; GO: 0016747 transferase activity, transferring acyl groups other than amino-acyl groups, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 3TO6_A 1MJA_A 1MJ9_A 3TO7_A 3TO9_A 1MJB_A 1FY7_A 2OZU_A 2RC4_A 2OU2_A ....
Probab=60.17 E-value=36 Score=36.20 Aligned_cols=84 Identities=15% Similarity=0.090 Sum_probs=47.9
Q ss_pred HHHHHHHHhhhhcCCCcccCCCCCCccccccccccCCCceecc--eEEEEEeeCCe--EEEEEEEEEeCCeeEEEeeeEe
Q 002334 760 LLLSQAVAIFHDCFDPIVDSISGRDLIPSMVYGRNLRGQEFGG--MYCAILTVNSS--VVSAGILRVFGQEVAELPLVAT 835 (935)
Q Consensus 760 skLa~AL~If~EcF~Pivd~rSgrDLIp~MVygr~~~~~~f~G--fY~~VL~~~~~--vVsaA~lrv~g~~vAElplVAT 835 (935)
....+-|-.|-..| +|++|=- .|... ||++.-..++. +||-=+=--...+--.|--|-|
T Consensus 26 ~~yCqnLcLlaKLF---Ld~Ktly--------------ydv~~F~FYVl~e~d~~g~h~vGyFSKEk~s~~~~NLsCIl~ 88 (188)
T PF01853_consen 26 KLYCQNLCLLAKLF---LDHKTLY--------------YDVDPFLFYVLTEKDDDGFHIVGYFSKEKESWDNNNLSCILT 88 (188)
T ss_dssp HHHHHHHHHHHHTT----SSGCCT--------------T-STTEEEEEEEEEETTEEEEEEEEEEESS-TT-EEESEEEE
T ss_pred chHHHHHHHHHHHH---hhCeEEE--------------eecCceEEEEEEEecCccceeEEEEEEEecccCCeeEeehhh
Confidence 56688899999999 4443321 12233 55544334432 3332221111123346778999
Q ss_pred ecCccCCChhHHHHHHHHHHhhhcC
Q 002334 836 SKINHGKGYFQLLFACIEKLLSFLR 860 (935)
Q Consensus 836 ~~~yRgqG~gr~L~~~IE~~L~~lg 860 (935)
.|.||++|||+.|++.-=.+.+.-|
T Consensus 89 lP~yQrkGyG~~LI~fSY~LSr~e~ 113 (188)
T PF01853_consen 89 LPPYQRKGYGRFLIDFSYELSRREG 113 (188)
T ss_dssp -GGGTTSSHHHHHHHHHHHHHHHTT
T ss_pred cchhhhcchhhhhhhhHHHHhhccC
Confidence 9999999999999987655555433
No 140
>KOG2752 consensus Uncharacterized conserved protein, contains N-recognin-type Zn-finger [General function prediction only]
Probab=59.87 E-value=8.5 Score=43.52 Aligned_cols=103 Identities=17% Similarity=0.264 Sum_probs=56.9
Q ss_pred CCCceecccCCCcccccccCCCCCCCCCCccccccccccccccccccccccccccccccccchhhhhhhhhhhhcccccc
Q 002334 564 DGGNLLPCDGCPRAFHKECASLSSIPQGDWYCKYCQNMFERKRFLQHDANAVEAGRVSGVDSVEQITKRCIRIVKNLEAE 643 (935)
Q Consensus 564 dgG~Ll~CD~Cp~afH~~CL~L~~vPeg~W~Cp~C~~~~~~ek~la~n~naia~gr~~Gvd~ieqi~~R~iR~vkd~e~e 643 (935)
+++....|-.|--.+|-.-..+.-+-.+.+.|--|..++.+... ++ ...+-.++..+ .+.+ ...
T Consensus 64 ~~~~agvC~~C~~~CH~~H~lveL~tKR~FrCDCg~sk~g~~sc---~l--~~~~~~~n~~N-------~YNh----Nfq 127 (345)
T KOG2752|consen 64 APEMAGVCYACSLSCHDGHELVELYTKRNFRCDCGNSKFGRCSC---NL--LEDKDAENSEN-------LYNH----NFQ 127 (345)
T ss_pred ChhhceeEEEeeeeecCCceeeeccccCCccccccccccccccc---cc--ccccccccchh-------hhhh----hhc
Confidence 45677888888878887776666666788999777665543211 00 00000000000 0000 001
Q ss_pred CCcceeccCCCCCCCCCCCCceeeCCCCCCcCC-CCCCCCC
Q 002334 644 LSGCLLCRGCDFSKSGFGPRTILLCDQCEREFH-VGCLKKH 683 (935)
Q Consensus 644 ~~~C~iC~~~df~~sgf~~~tLL~CDqCdr~YH-v~CL~p~ 683 (935)
..+|. |........-..++.|++|-.|+-||| .+|++..
T Consensus 128 G~~C~-Cd~~Ypdp~~~~e~~m~QC~iCEDWFHce~c~~~~ 167 (345)
T KOG2752|consen 128 GLFCK-CDTPYPDPVRTEEGEMLQCVICEDWFHCEGCMQAK 167 (345)
T ss_pred ceeEE-ecCCCCCccccccceeeeEEeccchhcccccCccc
Confidence 12243 544332211224678999999999999 9998764
No 141
>COG3818 Predicted acetyltransferase, GNAT superfamily [General function prediction only]
Probab=59.52 E-value=28 Score=35.26 Aligned_cols=59 Identities=14% Similarity=0.263 Sum_probs=45.2
Q ss_pred eEeecCccCCChhHHHHHHHHHHhhhcCccEEEec----ChhhhHHHHHhccCcEEcCHHHHH
Q 002334 833 VATSKINHGKGYFQLLFACIEKLLSFLRVKSIVLP----AAEEAESIWTDKFGFKKIDPELLS 891 (935)
Q Consensus 833 VAT~~~yRgqG~gr~L~~~IE~~L~~lgV~~LvLp----A~~~a~~~w~~kfGF~~i~~~el~ 891 (935)
|.|-..-||.|.+|+|...+-..+..-|-.+|++- --.+|...+-..|||+.+++.++.
T Consensus 90 vVVA~~aRGrG~aRalY~Dlf~~Ae~agy~~~tCEVn~DppnpasdaFHaalGF~eVG~a~ih 152 (167)
T COG3818 90 VVVASRARGRGVARALYADLFSYAELAGYPYLTCEVNLDPPNPASDAFHAALGFHEVGQATIH 152 (167)
T ss_pred EEEEecccccchHHHHHHHHHHHHHhcCCceEEEEecCCCCChHHHHHhhhcCceEccceEEe
Confidence 33344569999999999999999999999988763 223455666667999999986543
No 142
>PF13832 zf-HC5HC2H_2: PHD-zinc-finger like domain
Probab=58.60 E-value=4.5 Score=38.29 Aligned_cols=32 Identities=25% Similarity=0.679 Sum_probs=26.9
Q ss_pred CcceeccCCCCCCCCCCCCceeeCCC--CCCcCCCCCCCCCc
Q 002334 645 SGCLLCRGCDFSKSGFGPRTILLCDQ--CEREFHVGCLKKHK 684 (935)
Q Consensus 645 ~~C~iC~~~df~~sgf~~~tLL~CDq--Cdr~YHv~CL~p~~ 684 (935)
..|.+|+.. .+..+.|.. |...||+.|....+
T Consensus 56 ~~C~iC~~~--------~G~~i~C~~~~C~~~fH~~CA~~~g 89 (110)
T PF13832_consen 56 LKCSICGKS--------GGACIKCSHPGCSTAFHPTCARKAG 89 (110)
T ss_pred CcCcCCCCC--------CceeEEcCCCCCCcCCCHHHHHHCC
Confidence 459999974 467999998 99999999997754
No 143
>PRK00756 acyltransferase NodA; Provisional
Probab=58.36 E-value=16 Score=38.16 Aligned_cols=39 Identities=26% Similarity=0.148 Sum_probs=34.8
Q ss_pred eEEEeeeEeecCccCCChhHHHHHHHHHHhhhcCccEEEe
Q 002334 827 VAELPLVATSKINHGKGYFQLLFACIEKLLSFLRVKSIVL 866 (935)
Q Consensus 827 vAElplVAT~~~yRgqG~gr~L~~~IE~~L~~lgV~~LvL 866 (935)
+||+-+.|++++..|.|++..+ ..+--.|++|||..-|-
T Consensus 85 VaElGLygVRpDLEGlGi~~S~-r~m~PvLq~LgVPF~FG 123 (196)
T PRK00756 85 VAELGLYGVRPDLEGLGIAHSI-RAMYPVLQELGVPFAFG 123 (196)
T ss_pred EEEeeeeeeccccccccchhhH-HHHHHHHHhcCCCeecc
Confidence 8999999999999999999877 68889999999986553
No 144
>COG5628 Predicted acetyltransferase [General function prediction only]
Probab=57.26 E-value=32 Score=34.37 Aligned_cols=74 Identities=11% Similarity=0.085 Sum_probs=52.2
Q ss_pred EEEEeeCCeEEEEEEEE--EeC-----CeeEEEeeeEeecCccCCChhHHHHHHHHHHhhhcCccEEEecChhhhHHHHH
Q 002334 805 CAILTVNSSVVSAGILR--VFG-----QEVAELPLVATSKINHGKGYFQLLFACIEKLLSFLRVKSIVLPAAEEAESIWT 877 (935)
Q Consensus 805 ~~VL~~~~~vVsaA~lr--v~g-----~~vAElplVAT~~~yRgqG~gr~L~~~IE~~L~~lgV~~LvLpA~~~a~~~w~ 877 (935)
.++...+|.+||-+.+- ++. -.++|+ -+...|||+||||+...+|-.+.+.+ -+-.+++--..|..||.
T Consensus 39 ~~~~~~~~~~igf~l~L~~~~~~~~iD~~~~ef---FIi~k~~~~GvGR~aaK~If~~~~g~-w~Va~i~EN~PA~~fwK 114 (143)
T COG5628 39 AWLFRIGGLPVGFALVLDLAHSPTPIDRAVAEF---FIVRKHRRRGVGRAAAKAIFGSAWGV-WQVATVRENTPARAFWK 114 (143)
T ss_pred eeEEEECCceeeeeeeecccCCCCcccccchhe---EeeehhhccchhHHHHHHHHHHhhce-EEEEEeccCChhHHHHH
Confidence 44557789999988652 222 124443 34567999999999999998885433 34567888888999999
Q ss_pred hccCcE
Q 002334 878 DKFGFK 883 (935)
Q Consensus 878 ~kfGF~ 883 (935)
+ +-+.
T Consensus 115 ~-~~~t 119 (143)
T COG5628 115 R-VAET 119 (143)
T ss_pred h-hhcc
Confidence 9 5443
No 145
>PF13771 zf-HC5HC2H: PHD-like zinc-binding domain
Probab=56.46 E-value=3.6 Score=37.37 Aligned_cols=32 Identities=31% Similarity=0.766 Sum_probs=26.0
Q ss_pred CcceeccCCCCCCCCCCCCceeeCCC--CCCcCCCCCCCCCc
Q 002334 645 SGCLLCRGCDFSKSGFGPRTILLCDQ--CEREFHVGCLKKHK 684 (935)
Q Consensus 645 ~~C~iC~~~df~~sgf~~~tLL~CDq--Cdr~YHv~CL~p~~ 684 (935)
..|.+|+.. .+..+.|.. |.+.||+.|....+
T Consensus 37 ~~C~~C~~~--------~Ga~i~C~~~~C~~~fH~~CA~~~~ 70 (90)
T PF13771_consen 37 LKCSICKKK--------GGACIGCSHPGCSRSFHVPCARKAG 70 (90)
T ss_pred CCCcCCCCC--------CCeEEEEeCCCCCcEEChHHHccCC
Confidence 359999963 257899985 99999999998754
No 146
>PHA02929 N1R/p28-like protein; Provisional
Probab=56.22 E-value=4.5 Score=44.22 Aligned_cols=54 Identities=19% Similarity=0.340 Sum_probs=33.0
Q ss_pred CcccccccCccCCcCcccccCCCCceecccCCCcccccccCCCCCCCCCCcccccccccc
Q 002334 543 LGIICHCCNSEVSPSQFEAHADGGNLLPCDGCPRAFHKECASLSSIPQGDWYCKYCQNMF 602 (935)
Q Consensus 543 ~~i~C~~C~~eiSpS~FE~hadgG~Ll~CD~Cp~afH~~CL~L~~vPeg~W~Cp~C~~~~ 602 (935)
.+..|.+|.+.+.... ........-..|.+.||..|+. .|-...-.||.|+..+
T Consensus 173 ~~~eC~ICle~~~~~~----~~~~~~~vl~~C~H~FC~~CI~--~Wl~~~~tCPlCR~~~ 226 (238)
T PHA02929 173 KDKECAICMEKVYDKE----IKNMYFGILSNCNHVFCIECID--IWKKEKNTCPVCRTPF 226 (238)
T ss_pred CCCCCccCCcccccCc----cccccceecCCCCCcccHHHHH--HHHhcCCCCCCCCCEe
Confidence 4578999997543210 0000112223688999999994 3434456899999764
No 147
>PLN03238 probable histone acetyltransferase MYST; Provisional
Probab=55.22 E-value=25 Score=39.67 Aligned_cols=83 Identities=17% Similarity=0.119 Sum_probs=47.5
Q ss_pred HHHHHHHhhhhcCCCcccCCCCCCccccccccccCCCceecceEEEEEeeC----CeEEEEEEEEEeCCeeEEEeeeEee
Q 002334 761 LLSQAVAIFHDCFDPIVDSISGRDLIPSMVYGRNLRGQEFGGMYCAILTVN----SSVVSAGILRVFGQEVAELPLVATS 836 (935)
Q Consensus 761 kLa~AL~If~EcF~Pivd~rSgrDLIp~MVygr~~~~~~f~GfY~~VL~~~----~~vVsaA~lrv~g~~vAElplVAT~ 836 (935)
...+-|-.|-..| +|++|=- .|...|.-+||... ..+||-=+=-..-.+--.|--|-|.
T Consensus 102 ~yCqnLcLlaKLF---LdhKtly--------------yDV~~FlFYVl~e~d~~g~h~vGYFSKEK~s~~~nNLaCIltL 164 (290)
T PLN03238 102 VYCQNLCLLAKLF---LDHKTLY--------------YDVDPFLFYVMTEVDDHGSHIVGYFSKEKVSAEDYNLACILTL 164 (290)
T ss_pred hHHHHHHHHHHHh---hcCcccc--------------ccccceEEEEEEEecCCCcEEEEEeceeccccCCCcEEEEEec
Confidence 4567777777777 4444321 13344444444432 2344422211111122447788999
Q ss_pred cCccCCChhHHHHHHHHHHhhhcC
Q 002334 837 KINHGKGYFQLLFACIEKLLSFLR 860 (935)
Q Consensus 837 ~~yRgqG~gr~L~~~IE~~L~~lg 860 (935)
|.||++|||+.|++.-=++.+.-|
T Consensus 165 PpyQrkGyG~~LI~fSYeLSr~Eg 188 (290)
T PLN03238 165 PPYQRKGYGKFLISFAYELSKREG 188 (290)
T ss_pred ChhhhccHhHhHHHHHhHHhhccC
Confidence 999999999999987655554444
No 148
>PF04377 ATE_C: Arginine-tRNA-protein transferase, C terminus; InterPro: IPR007472 Arginine-tRNA-protein transferase catalyses the post-translational conjugation of arginine to the N terminus of a protein. In eukaryotes, this functions as part of the N terminus rule pathway of protein degradation by conjugating a destabilising amino acid to the N-terminal aspartate or glutamate of a protein, targeting the protein for ubiquitin-dependent proteolysis. N-terminal cysteine is sometimes modified []. In Saccharomyces cerevisiae, Cys20, 23, 94 and/or 95 are thought to be important for activity []. Of these, only Cys 94 appears to be completely conserved in this family. This entry represents the C-terminal region of the enzyme arginine-tRNA-protein transferase, found in both eukaryotic and prokaryotic enzymes.; GO: 0004057 arginyltransferase activity, 0016598 protein arginylation
Probab=53.88 E-value=54 Score=32.76 Aligned_cols=62 Identities=5% Similarity=0.008 Sum_probs=50.4
Q ss_pred eEEEEEeeCCeEEEEEEEEEeCCeeEEEeeeEeecCccCCChhHHHHHHHHHHhhhcCccEEE
Q 002334 803 MYCAILTVNSSVVSAGILRVFGQEVAELPLVATSKINHGKGYFQLLFACIEKLLSFLRVKSIV 865 (935)
Q Consensus 803 fY~~VL~~~~~vVsaA~lrv~g~~vAElplVAT~~~yRgqG~gr~L~~~IE~~L~~lgV~~Lv 865 (935)
-+.+-...+|++|++|.+.+..+.+.-|-.+= +|++...++|...+..-.+.++++|.+.+-
T Consensus 39 t~~~~~~~~~kLiav~v~D~l~~glSaVY~fy-DPd~~~~SlG~~~iL~eI~~a~~~~l~y~Y 100 (128)
T PF04377_consen 39 TYHLEYRLDGKLIAVAVVDILPDGLSAVYTFY-DPDYSKRSLGTYSILREIELARELGLPYYY 100 (128)
T ss_pred CEEEEEEeCCeEEEEEEeecccchhhheeeee-CCCccccCcHHHHHHHHHHHHHHcCCCEEe
Confidence 34444468999999999988777655544443 889999999999999999999999999998
No 149
>PTZ00064 histone acetyltransferase; Provisional
Probab=53.48 E-value=16 Score=43.85 Aligned_cols=83 Identities=17% Similarity=0.063 Sum_probs=48.0
Q ss_pred HHHHHHHHhhhhcCCCcccCCCCCCccccccccccCCCceecceEEEEEee-C---CeEEEEEEEEEeCCeeEEEeeeEe
Q 002334 760 LLLSQAVAIFHDCFDPIVDSISGRDLIPSMVYGRNLRGQEFGGMYCAILTV-N---SSVVSAGILRVFGQEVAELPLVAT 835 (935)
Q Consensus 760 skLa~AL~If~EcF~Pivd~rSgrDLIp~MVygr~~~~~~f~GfY~~VL~~-~---~~vVsaA~lrv~g~~vAElplVAT 835 (935)
....+-|-.|-..| +|++|=- .|...|.-+||.. | -.+||-=+=-..-.+--.|--|-|
T Consensus 330 klYCQNLCLLAKLF---LDhKTLY--------------yDVdpFlFYVLtE~D~~G~HiVGYFSKEK~S~~~nNLACILt 392 (552)
T PTZ00064 330 RGYAENLCYLAKLF---LDHKTLQ--------------YDVEPFLFYIVTEVDEEGCHIVGYFSKEKVSLLHYNLACILT 392 (552)
T ss_pred hhHHHHHHHHHHHh---ccCcccc--------------ccccceEEEEEEEecCCCcEEEEEecccccCcccCceEEEEe
Confidence 45577777888888 4443321 1344455555543 2 244432221111112235778899
Q ss_pred ecCccCCChhHHHHHHHHHHhhhc
Q 002334 836 SKINHGKGYFQLLFACIEKLLSFL 859 (935)
Q Consensus 836 ~~~yRgqG~gr~L~~~IE~~L~~l 859 (935)
.|.||++|||+.|++.-=.+.+.-
T Consensus 393 LPpyQRKGYGklLIdfSYeLSrrE 416 (552)
T PTZ00064 393 LPCYQRKGYGKLLVDLSYKLSLKE 416 (552)
T ss_pred cchhhhcchhhhhhhhhhhhhhhc
Confidence 999999999999998655554433
No 150
>PF13880 Acetyltransf_13: ESCO1/2 acetyl-transferase
Probab=53.37 E-value=10 Score=34.20 Aligned_cols=26 Identities=15% Similarity=0.126 Sum_probs=23.0
Q ss_pred EeeeEeecCccCCChhHHHHHHHHHH
Q 002334 830 LPLVATSKINHGKGYFQLLFACIEKL 855 (935)
Q Consensus 830 lplVAT~~~yRgqG~gr~L~~~IE~~ 855 (935)
|.+|=|.+.+|++|+.++||+++-..
T Consensus 8 I~RIWV~~~~RR~GIAt~Lld~ar~~ 33 (70)
T PF13880_consen 8 ISRIWVSPSHRRKGIATRLLDAAREN 33 (70)
T ss_pred eEEEEeChhhhhhhHHHHHHHHHHHh
Confidence 66777899999999999999988765
No 151
>KOG1734 consensus Predicted RING-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=52.69 E-value=3.5 Score=45.62 Aligned_cols=56 Identities=21% Similarity=0.431 Sum_probs=34.5
Q ss_pred CCcccccccCccCCcCcccccCCCCcee---cccCCCcccccccCCCCCCCCCCcccccccccc
Q 002334 542 GLGIICHCCNSEVSPSQFEAHADGGNLL---PCDGCPRAFHKECASLSSIPQGDWYCKYCQNMF 602 (935)
Q Consensus 542 ~~~i~C~~C~~eiSpS~FE~hadgG~Ll---~CD~Cp~afH~~CL~L~~vPeg~W~Cp~C~~~~ 602 (935)
-++-+|.+|++.+..+. |.+-++ .=-.|.+.||..|+.---+--..-.||.|+.++
T Consensus 222 l~d~vCaVCg~~~~~s~-----~eegvienty~LsCnHvFHEfCIrGWcivGKkqtCPYCKekV 280 (328)
T KOG1734|consen 222 LSDSVCAVCGQQIDVSV-----DEEGVIENTYKLSCNHVFHEFCIRGWCIVGKKQTCPYCKEKV 280 (328)
T ss_pred CCcchhHhhcchheeec-----chhhhhhhheeeecccchHHHhhhhheeecCCCCCchHHHHh
Confidence 35678999998765542 222111 112588999999994112222346899998653
No 152
>PF14569 zf-UDP: Zinc-binding RING-finger; PDB: 1WEO_A.
Probab=52.11 E-value=3.5 Score=37.82 Aligned_cols=58 Identities=24% Similarity=0.639 Sum_probs=26.5
Q ss_pred cCCcccccccCccCCcCcccccCCCCceecccCCCcccccccCCCCCCCCCCcccccccccccc
Q 002334 541 NGLGIICHCCNSEVSPSQFEAHADGGNLLPCDGCPRAFHKECASLSSIPQGDWYCKYCQNMFER 604 (935)
Q Consensus 541 ~~~~i~C~~C~~eiSpS~FE~hadgG~Ll~CD~Cp~afH~~CL~L~~vPeg~W~Cp~C~~~~~~ 604 (935)
.-++.+|.+|+..+-.. ++|.-.+.|..|.......|+.. +..+|.-.||.|+..+.+
T Consensus 6 ~~~~qiCqiCGD~VGl~-----~~Ge~FVAC~eC~fPvCr~CyEY-Erkeg~q~CpqCkt~ykr 63 (80)
T PF14569_consen 6 NLNGQICQICGDDVGLT-----ENGEVFVACHECAFPVCRPCYEY-ERKEGNQVCPQCKTRYKR 63 (80)
T ss_dssp --SS-B-SSS--B--B------SSSSB--S-SSS-----HHHHHH-HHHTS-SB-TTT--B---
T ss_pred hcCCcccccccCccccC-----CCCCEEEEEcccCCccchhHHHH-HhhcCcccccccCCCccc
Confidence 35688999999765443 37778899999987777788853 456788899999976544
No 153
>PLN03239 histone acetyltransferase; Provisional
Probab=52.05 E-value=20 Score=41.30 Aligned_cols=32 Identities=25% Similarity=0.218 Sum_probs=25.2
Q ss_pred EEeeeEeecCccCCChhHHHHHHHHHHhhhcC
Q 002334 829 ELPLVATSKINHGKGYFQLLFACIEKLLSFLR 860 (935)
Q Consensus 829 ElplVAT~~~yRgqG~gr~L~~~IE~~L~~lg 860 (935)
.|--|-|.|.||++|||+.|++.-=++.+.-|
T Consensus 215 NLaCIltLPpyQrkGyG~lLI~fSYeLSr~Eg 246 (351)
T PLN03239 215 NLACILTFPAHQRKGYGRFLIAFSYELSKKEE 246 (351)
T ss_pred ceEEEEecChhhhcchhhhhHhhhhHhhhhcC
Confidence 57788999999999999999986555544433
No 154
>KOG1428 consensus Inhibitor of type V adenylyl cyclases/Neuronal presynaptic protein Highwire/PAM/RPM-1 [Signal transduction mechanisms]
Probab=50.86 E-value=2.7 Score=54.71 Aligned_cols=31 Identities=32% Similarity=0.729 Sum_probs=22.6
Q ss_pred CCCcccccccCC--C------CCCCCCCccccccccccc
Q 002334 573 GCPRAFHKECAS--L------SSIPQGDWYCKYCQNMFE 603 (935)
Q Consensus 573 ~Cp~afH~~CL~--L------~~vPeg~W~Cp~C~~~~~ 603 (935)
+|.+.||+.|.. | +.+-.|--.||.|++++.
T Consensus 3506 ~C~HiFHlqC~R~vLE~RW~GPRItF~FisCPiC~n~In 3544 (3738)
T KOG1428|consen 3506 DCSHIFHLQCCRRVLENRWLGPRITFGFISCPICKNKIN 3544 (3738)
T ss_pred CCccchhHHHHHHHHHhcccCCeeEEeeeecccccchhh
Confidence 599999999984 2 233345578999998753
No 155
>PF13444 Acetyltransf_5: Acetyltransferase (GNAT) domain
Probab=50.75 E-value=32 Score=32.20 Aligned_cols=25 Identities=20% Similarity=0.292 Sum_probs=21.3
Q ss_pred CeeEEEeeeEeecCccCCChhHHHH
Q 002334 825 QEVAELPLVATSKINHGKGYFQLLF 849 (935)
Q Consensus 825 ~~vAElplVAT~~~yRgqG~gr~L~ 849 (935)
..++||-++|+.++||+...-..|.
T Consensus 76 ~~~~EisRl~V~~~~R~~~~~~~L~ 100 (101)
T PF13444_consen 76 RRVAEISRLCVHPEYRRRKVLLLLW 100 (101)
T ss_pred CcEEEeehheECHhHCCChHHHHHh
Confidence 3689999999999999998777664
No 156
>COG5194 APC11 Component of SCF ubiquitin ligase and anaphase-promoting complex [Posttranslational modification, protein turnover, chaperones / Cell division and chromosome partitioning]
Probab=50.03 E-value=4.7 Score=37.25 Aligned_cols=56 Identities=16% Similarity=0.346 Sum_probs=32.9
Q ss_pred ccccccCccCCcCc----ccccCCCCceecccCCCcccccccCCCCCCCCCCcccccccccc
Q 002334 545 IICHCCNSEVSPSQ----FEAHADGGNLLPCDGCPRAFHKECASLSSIPQGDWYCKYCQNMF 602 (935)
Q Consensus 545 i~C~~C~~eiSpS~----FE~hadgG~Ll~CD~Cp~afH~~CL~L~~vPeg~W~Cp~C~~~~ 602 (935)
+.|++|+..+.... |....++.=-+.=..|.++||..|+. .|-+..-.||.+++.+
T Consensus 21 d~CaICRnhim~~C~eCq~~~~~~~eC~v~wG~CnHaFH~HCI~--rWL~Tk~~CPld~q~w 80 (88)
T COG5194 21 DVCAICRNHIMGTCPECQFGMTPGDECPVVWGVCNHAFHDHCIY--RWLDTKGVCPLDRQTW 80 (88)
T ss_pred chhhhhhccccCcCcccccCCCCCCcceEEEEecchHHHHHHHH--HHHhhCCCCCCCCcee
Confidence 67888876543211 11111222112224699999999994 3434477899998764
No 157
>KOG1701 consensus Focal adhesion adaptor protein Paxillin and related LIM proteins [Signal transduction mechanisms]
Probab=49.90 E-value=3.5 Score=48.10 Aligned_cols=36 Identities=25% Similarity=0.528 Sum_probs=21.4
Q ss_pred cceeccCCCCCCCCCCCCceeeCCCCCCcCCCCCCCCC
Q 002334 646 GCLLCRGCDFSKSGFGPRTILLCDQCEREFHVGCLKKH 683 (935)
Q Consensus 646 ~C~iC~~~df~~sgf~~~tLL~CDqCdr~YHv~CL~p~ 683 (935)
.|.+|++.-....|- ++.+.=--=+|.||++|.+.-
T Consensus 396 rCs~C~~PI~P~~G~--~etvRvvamdr~fHv~CY~CE 431 (468)
T KOG1701|consen 396 RCSVCGNPILPRDGK--DETVRVVAMDRDFHVNCYKCE 431 (468)
T ss_pred chhhccCCccCCCCC--cceEEEEEccccccccceehh
Confidence 489998765444332 223333334688999998653
No 158
>KOG2747 consensus Histone acetyltransferase (MYST family) [Chromatin structure and dynamics]
Probab=48.07 E-value=19 Score=42.04 Aligned_cols=76 Identities=21% Similarity=0.194 Sum_probs=45.9
Q ss_pred HHHHHHHHHhhhhcCCCcccCCCCCCccccccccccCCCceecceEEEEEeeCCeEEEEEEEEEeCCee---EEEeeeEe
Q 002334 759 RLLLSQAVAIFHDCFDPIVDSISGRDLIPSMVYGRNLRGQEFGGMYCAILTVNSSVVSAGILRVFGQEV---AELPLVAT 835 (935)
Q Consensus 759 ~skLa~AL~If~EcF~Pivd~rSgrDLIp~MVygr~~~~~~f~GfY~~VL~~~~~vVsaA~lrv~g~~v---AElplVAT 835 (935)
+....+-|=.|-..| +|++| +| .|...|.-+||...|..= ++-.+--...- -.|--|=|
T Consensus 207 ~k~YCQnLCLlaKLF---LdhKT--------LY------yDvdpFlFYVlte~d~~G-~VGYFSKEK~s~~~yNlaCILt 268 (396)
T KOG2747|consen 207 QKLYCQNLCLLAKLF---LDHKT--------LY------YDVDPFLFYVLTECDSYG-CVGYFSKEKESSENYNLACILT 268 (396)
T ss_pred hhHHHHHHHHHHHHH---hcCce--------eE------EeccceEEEEEEecCCcc-eeeeeccccccccccceeeeee
Confidence 355677777788888 34322 22 244556666666544332 22222222222 33778889
Q ss_pred ecCccCCChhHHHHHHH
Q 002334 836 SKINHGKGYFQLLFACI 852 (935)
Q Consensus 836 ~~~yRgqG~gr~L~~~I 852 (935)
.|.||++|||+.|++.=
T Consensus 269 LPpyQRkGYGklLIdFS 285 (396)
T KOG2747|consen 269 LPPYQRKGYGKLLIDFS 285 (396)
T ss_pred cChhhhcccchhhhhhh
Confidence 99999999999998753
No 159
>PF12261 T_hemolysin: Thermostable hemolysin; InterPro: IPR022050 This family of proteins is found in bacteria. Proteins in this family are typically between 200 and 228 amino acids in length. T_hemolysin is a pore-forming toxin of bacteria, able to lyse erythrocytes from a number of mammalian species.
Probab=47.97 E-value=33 Score=36.19 Aligned_cols=63 Identities=21% Similarity=0.321 Sum_probs=50.4
Q ss_pred eeEEEeeeEeecCccCCChhHHHHHHHHHHhhhcCccEEEecChhhhHHHHHhccCcEE--cCHHHHHHH
Q 002334 826 EVAELPLVATSKINHGKGYFQLLFACIEKLLSFLRVKSIVLPAAEEAESIWTDKFGFKK--IDPELLSIY 893 (935)
Q Consensus 826 ~vAElplVAT~~~yRgqG~gr~L~~~IE~~L~~lgV~~LvLpA~~~a~~~w~~kfGF~~--i~~~el~~~ 893 (935)
.++||--+|.. +.|.++.|+..+-..|...|.+.++.-|.........+ +|+.. +.+.+-.++
T Consensus 86 ~IvEvGnLAs~----~~g~~~~l~~~l~~~L~~~g~~w~vfTaT~~lr~~~~r-lgl~~~~La~Ad~~rl 150 (179)
T PF12261_consen 86 QIVEVGNLASF----SPGAARLLFAALAQLLAQQGFEWVVFTATRQLRNLFRR-LGLPPTVLADADPSRL 150 (179)
T ss_pred heeEeechhhc----CcccHHHHHHHHHHHHHHCCCCEEEEeCCHHHHHHHHH-cCCCceeccccCHhHc
Confidence 46777777655 58999999999999999999999999999999998887 77654 444444443
No 160
>cd00162 RING RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H)
Probab=47.03 E-value=6 Score=30.07 Aligned_cols=30 Identities=20% Similarity=0.506 Sum_probs=20.4
Q ss_pred ecccCCCcccccccCCCCCCC-CCCcccccccc
Q 002334 569 LPCDGCPRAFHKECASLSSIP-QGDWYCKYCQN 600 (935)
Q Consensus 569 l~CD~Cp~afH~~CL~L~~vP-eg~W~Cp~C~~ 600 (935)
..-..|.+.||..|+. .+- .+...||.|+.
T Consensus 13 ~~~~~C~H~~c~~C~~--~~~~~~~~~Cp~C~~ 43 (45)
T cd00162 13 VVLLPCGHVFCRSCID--KWLKSGKNTCPLCRT 43 (45)
T ss_pred eEecCCCChhcHHHHH--HHHHhCcCCCCCCCC
Confidence 3344588999999995 111 14678999974
No 161
>PLN00104 MYST -like histone acetyltransferase; Provisional
Probab=46.78 E-value=21 Score=42.47 Aligned_cols=80 Identities=19% Similarity=0.154 Sum_probs=46.0
Q ss_pred HHHHHHHHhhhhcCCCcccCCCCCCccccccccccCCCceecceEEEEEee----CCeEEEEEEEEEeCCeeEEEeeeEe
Q 002334 760 LLLSQAVAIFHDCFDPIVDSISGRDLIPSMVYGRNLRGQEFGGMYCAILTV----NSSVVSAGILRVFGQEVAELPLVAT 835 (935)
Q Consensus 760 skLa~AL~If~EcF~Pivd~rSgrDLIp~MVygr~~~~~~f~GfY~~VL~~----~~~vVsaA~lrv~g~~vAElplVAT 835 (935)
....+-|-.|-..| +|++|= | .|...|.-+||.. +-.+||-=+=--.-.+--.|--|-|
T Consensus 252 ~~yCqnLcLlaKLF---LdhKtl--------y------ydV~~FlFYvl~e~d~~g~h~vGyFSKEk~s~~~~NLaCIlt 314 (450)
T PLN00104 252 KVYCQNLCYLAKLF---LDHKTL--------Y------YDVDLFLFYVLCECDDRGCHMVGYFSKEKHSEEDYNLACILT 314 (450)
T ss_pred hhHHHHHHHHHHHh---hcCcce--------e------ccccceEEEEEEEecCCCcEEEEEecccccCcCCCceEEEEe
Confidence 44577777777888 444331 1 2334455555543 2245443221111112235778899
Q ss_pred ecCccCCChhHHHHHHHHHHh
Q 002334 836 SKINHGKGYFQLLFACIEKLL 856 (935)
Q Consensus 836 ~~~yRgqG~gr~L~~~IE~~L 856 (935)
.|.||++|||+.|++.-=++.
T Consensus 315 lP~yQrkGyG~~LI~~SYeLS 335 (450)
T PLN00104 315 LPPYQRKGYGKFLIAFSYELS 335 (450)
T ss_pred cchhhhcchhheehhheehhh
Confidence 999999999999987544433
No 162
>PLN02400 cellulose synthase
Probab=45.92 E-value=17 Score=47.23 Aligned_cols=60 Identities=23% Similarity=0.624 Sum_probs=47.3
Q ss_pred cCCcccccccCccCCcCcccccCCCCceecccCCCcccccccCCCCCCCCCCcccccccccccccc
Q 002334 541 NGLGIICHCCNSEVSPSQFEAHADGGNLLPCDGCPRAFHKECASLSSIPQGDWYCKYCQNMFERKR 606 (935)
Q Consensus 541 ~~~~i~C~~C~~eiSpS~FE~hadgG~Ll~CD~Cp~afH~~CL~L~~vPeg~W~Cp~C~~~~~~ek 606 (935)
.-++.+|.+|+..+-.. ++|.-.+-|..|.-.....|+.- +..+|.=.||.|+..+.+.+
T Consensus 33 ~~~gqiCqICGD~VG~t-----~dGe~FVAC~eCaFPVCRpCYEY-ERkeGnq~CPQCkTrYkR~K 92 (1085)
T PLN02400 33 NLNGQICQICGDDVGVT-----ETGDVFVACNECAFPVCRPCYEY-ERKDGTQCCPQCKTRYRRHK 92 (1085)
T ss_pred ccCCceeeecccccCcC-----CCCCEEEEEccCCCccccchhhe-ecccCCccCcccCCcccccc
Confidence 35678999999876543 37777799999998888899954 56788999999998776543
No 163
>PRK14852 hypothetical protein; Provisional
Probab=45.75 E-value=60 Score=42.36 Aligned_cols=63 Identities=19% Similarity=0.226 Sum_probs=53.8
Q ss_pred CeeEEEeeeEeecCccCCChhHHHHHHHHHHhhhcCccEEEecChhhhHHHHHhccCcEEcCH
Q 002334 825 QEVAELPLVATSKINHGKGYFQLLFACIEKLLSFLRVKSIVLPAAEEAESIWTDKFGFKKIDP 887 (935)
Q Consensus 825 ~~vAElplVAT~~~yRgqG~gr~L~~~IE~~L~~lgV~~LvLpA~~~a~~~w~~kfGF~~i~~ 887 (935)
..++|+-.+|++++.|.+=+--.|+..+-..+...|+..+++---+.=..||++-|||+.+++
T Consensus 119 r~v~EvtrLa~d~~~~~~~l~~~l~~~~~~y~~~~~~dd~~i~VnPkH~~FY~r~l~f~~ig~ 181 (989)
T PRK14852 119 RNVVEVGALATQYSRRWTNLMVFLAKAMFQYSMMSEVDDILVTVNPKHVKFYTDIFLFKPFGE 181 (989)
T ss_pred CeEEeeehheechhhcccchhHHHHHHHHHHHHHcCCCeEEEEECcchHHHHHHHhCCccccc
Confidence 469999999998877776666677777766667789999999999999999999999999986
No 164
>PF04958 AstA: Arginine N-succinyltransferase beta subunit; InterPro: IPR007041 Arginine N-succinyltransferase catalyses the transfer of succinyl-CoA to arginine to produce succinylarginine. This is the first step in arginine catabolism via the arginine succinyltransferase pathway. Six major L-arginine-degrading pathways have been described for prokaryotes []. Many bacteria arginine succinyltransferase 2.3.1.109 from EC, which is the AstA protein of the succinyltransferase (ast) pathway operon consists of five genes. In a few species, such as Pseudomonas aeruginosa, a tandem gene pair encodes alpha and beta subunits of a heterodimer that is designated arginine and ornithine succinyltransferase (AOST). This entry represents the family of proteins that make up the beta subunit of the heterodimer of Ast and AOST.; GO: 0008791 arginine N-succinyltransferase activity, 0006527 arginine catabolic process; PDB: 1YLE_A.
Probab=45.27 E-value=31 Score=39.82 Aligned_cols=107 Identities=18% Similarity=0.153 Sum_probs=56.4
Q ss_pred hhhHHHHHHHHHhhhhcC-CCcccCCCCCCccccccccccCCCceecceEEEEEee--CCeEEEEEEEEEeC--------
Q 002334 756 PETRLLLSQAVAIFHDCF-DPIVDSISGRDLIPSMVYGRNLRGQEFGGMYCAILTV--NSSVVSAGILRVFG-------- 824 (935)
Q Consensus 756 ~e~~skLa~AL~If~EcF-~Pivd~rSgrDLIp~MVygr~~~~~~f~GfY~~VL~~--~~~vVsaA~lrv~g-------- 824 (935)
+.+...|..-+.-=.+.| ...++. --.-.|.+||+. .|+|||++.|..--
T Consensus 30 P~d~~~L~~rI~~S~~sFa~~~~~~-------------------~~~~~YlfVLED~~tg~vvGts~I~a~vG~~~PfY~ 90 (342)
T PF04958_consen 30 PPDREALAERIERSERSFAGRDVDF-------------------PGDEGYLFVLEDTETGEVVGTSAIEAAVGLDEPFYS 90 (342)
T ss_dssp -S-HHHHHHHHHHHHHHHH-TT-----------------------S--EEEEEEEETTT--EEEEEEEESSTTSSS---E
T ss_pred CCCHHHHHHHHHHHHHHhhccccCC-------------------CCccceEEEEEecCCCcEEEEEeEEeccCCCCCcEE
Confidence 555666666666556666 233221 012269999995 69999998653211
Q ss_pred ----------------------------CeeEEEeeeEeecCccCCChhHHHHHHHHHHh---hhcCccEEEec----Ch
Q 002334 825 ----------------------------QEVAELPLVATSKINHGKGYFQLLFACIEKLL---SFLRVKSIVLP----AA 869 (935)
Q Consensus 825 ----------------------------~~vAElplVAT~~~yRgqG~gr~L~~~IE~~L---~~lgV~~LvLp----A~ 869 (935)
++-.||--+-.+++||+-|.|+.|-.+=--.+ ++.=-++++.- ..
T Consensus 91 yr~~~~vh~S~~L~v~~~~~~L~L~~d~tG~sEl~tLfL~p~~R~~~~G~lLSr~RfLFiA~~~~rF~~~viAElrG~~D 170 (342)
T PF04958_consen 91 YRVSTLVHASRELGVRNRHETLTLSNDYTGCSELCTLFLDPDYRGGGNGRLLSRSRFLFIAQHRERFADRVIAELRGVSD 170 (342)
T ss_dssp EEEEEEEEEETTTTEEEEEEEEEEE-TTTTSEEEEEEEE-GGGTTSHHHHHHHHHHHHHHHH-GGGS-SEEEEE--B---
T ss_pred EEcCceeEcCcccCCccceeeEeeecCCCCCeeeEEEEECHHHcCCchHHHHHHHHHHHHHhChhhcchheeeeccCCcC
Confidence 46788888899999999999988754321111 11112333322 12
Q ss_pred h-hhHHHHHhccCc
Q 002334 870 E-EAESIWTDKFGF 882 (935)
Q Consensus 870 ~-~a~~~w~~kfGF 882 (935)
+ .--|||.. +|-
T Consensus 171 e~G~SPFWda-lG~ 183 (342)
T PF04958_consen 171 EDGRSPFWDA-LGR 183 (342)
T ss_dssp TT---HHHHH-TGG
T ss_pred CCCCCchHHH-hhc
Confidence 2 35789998 663
No 165
>KOG2779 consensus N-myristoyl transferase [Lipid transport and metabolism]
Probab=44.41 E-value=67 Score=37.34 Aligned_cols=127 Identities=16% Similarity=0.245 Sum_probs=86.7
Q ss_pred CcceeEccCCCCChhhHHHHHHHHHhhhhcCCCcccCCCCCCcccccccccc-----CCCceecceEEEEEeeC--CeEE
Q 002334 743 DVRWRLLSGKAATPETRLLLSQAVAIFHDCFDPIVDSISGRDLIPSMVYGRN-----LRGQEFGGMYCAILTVN--SSVV 815 (935)
Q Consensus 743 dikWqLLsgk~~s~e~~skLa~AL~If~EcF~Pivd~rSgrDLIp~MVygr~-----~~~~~f~GfY~~VL~~~--~~vV 815 (935)
.+.|..+- ..+...|.+-.+.+.|-+.--. |.....-|..+ +..-++.--|.+.+... +++|
T Consensus 80 gf~W~tld-----v~~~~~l~el~~lL~enyVEd~------~~m~rf~Ys~eFl~Wal~~pg~~~~WHiGVRv~~s~kLV 148 (421)
T KOG2779|consen 80 GFRWETLD-----VSDFKDLEELYNLLNENYVEDD------DSMFRFDYSPEFLKWALQPPGWKKEWHIGVRVKSSKKLV 148 (421)
T ss_pred CceeeccC-----CccHhHHHHHHhhcccCCCCcc------ccchhhhccHHHHHhhhcCCCCccceEEEEEEecCCceE
Confidence 57887653 2233456677777777763222 22222334333 34445555677777764 3776
Q ss_pred EE-----EEEEEeCC--eeEEEeeeEeecCccCCChhHHHHHHHHHHhhhcCcc------EEEecChhhhHHHHHhcc
Q 002334 816 SA-----GILRVFGQ--EVAELPLVATSKINHGKGYFQLLFACIEKLLSFLRVK------SIVLPAAEEAESIWTDKF 880 (935)
Q Consensus 816 sa-----A~lrv~g~--~vAElplVAT~~~yRgqG~gr~L~~~IE~~L~~lgV~------~LvLpA~~~a~~~w~~kf 880 (935)
+- ++|||.+. ..+||-++.+++..|++++.=.|+.+|-+...--||- -++||+-...-.-|-+.+
T Consensus 149 aFIsaiP~~irvrdk~vk~veINFLCVHKkLRSKRlaPvLIrEITRRvnl~gIfqA~yTaGvvLp~PVstcRY~HRsL 226 (421)
T KOG2779|consen 149 AFISAIPATIRVRDKVVKMVEINFLCVHKKLRSKRLAPVLIREITRRVNLEGIFQAAYTAGVVLPKPVSTCRYWHRSL 226 (421)
T ss_pred EEEeccccEEEEccceeeeeeEEEEEEehhhhccccccHHHHHHHHHhhhhhhhhHhhhcceeeccccchhhhhhccC
Confidence 63 57888886 6899999999999999999999999998876666654 477888877777777743
No 166
>PF10497 zf-4CXXC_R1: Zinc-finger domain of monoamine-oxidase A repressor R1; InterPro: IPR018866 R1 is a transcription factor repressor that inhibits monoamine oxidase A gene expression. This domain is a four-CXXC zinc finger putative DNA-binding domain found at the C-terminal end of R1. The domain carries 12 cysteines of which four pairs are of the CXXC type [].
Probab=43.91 E-value=11 Score=36.40 Aligned_cols=49 Identities=22% Similarity=0.609 Sum_probs=32.0
Q ss_pred CCcccccccCccCCcCcccccCCCCceecc------cCC---CcccccccCC------C-CCCCCCCcccccccc
Q 002334 542 GLGIICHCCNSEVSPSQFEAHADGGNLLPC------DGC---PRAFHKECAS------L-SSIPQGDWYCKYCQN 600 (935)
Q Consensus 542 ~~~i~C~~C~~eiSpS~FE~hadgG~Ll~C------D~C---p~afH~~CL~------L-~~vPeg~W~Cp~C~~ 600 (935)
..+..|..|..... +....| ..| ...|.-.||- + +...+++|.||.|+.
T Consensus 5 ~~g~~CHqCrqKt~----------~~~~~C~~~~~~~~C~~~~~~fC~~CL~~ryge~~~ev~~~~~W~CP~Crg 69 (105)
T PF10497_consen 5 VNGKTCHQCRQKTL----------DFKTICTGHWKNSSCRGCRGKFCGGCLRNRYGENVEEVLEDPNWKCPKCRG 69 (105)
T ss_pred CCCCCchhhcCCCC----------CCceEcCCCCCCCCCccCcceehHhHHHHHHhhhHHHHhcCCceECCCCCC
Confidence 45778888886422 222344 445 8888888883 2 223567899999985
No 167
>COG3916 LasI N-acyl-L-homoserine lactone synthetase [Signal transduction mechanisms / Secondary metabolites biosynthesis, transport, and catabolism]
Probab=42.94 E-value=1.2e+02 Score=32.95 Aligned_cols=81 Identities=22% Similarity=0.151 Sum_probs=61.5
Q ss_pred cceEEEEEeeCCeEEEEEEEEEeC---------------------CeeEEEeeeEeec--CccCCCh----hHHHHHHHH
Q 002334 801 GGMYCAILTVNSSVVSAGILRVFG---------------------QEVAELPLVATSK--INHGKGY----FQLLFACIE 853 (935)
Q Consensus 801 ~GfY~~VL~~~~~vVsaA~lrv~g---------------------~~vAElplVAT~~--~yRgqG~----gr~L~~~IE 853 (935)
.-.|.+.+..+|+|+|+++|=... ++++|.-++|++. .-+++|= ...||..+.
T Consensus 51 ~t~Yll~~~~~g~I~G~~RlLptt~P~mL~~vF~~Ll~~~~~P~~p~vwEsSRF~vd~~~a~~~~g~~~~a~~el~~g~i 130 (209)
T COG3916 51 DTVYLLALTSDGRIVGCVRLLPTTGPYMLTDVFPALLEGGPPPSSPGVWESSRFAVDKPSARRAAGGVSPAAYELFAGMI 130 (209)
T ss_pred CceEEEEEcCCCcEEEEEEeccCCCcchhhhhhHHHhcCCCCCCCCCeEEEeeeeeccccchhhcCCccHHHHHHHHHHH
Confidence 447888888899999999874321 4799999999997 5555553 567999999
Q ss_pred HHhhhcCccEEEecChhhhHHHHHhccCc
Q 002334 854 KLLSFLRVKSIVLPAAEEAESIWTDKFGF 882 (935)
Q Consensus 854 ~~L~~lgV~~LvLpA~~~a~~~w~~kfGF 882 (935)
+.+...|+.+|+.=...-.+.+... .||
T Consensus 131 e~a~~~G~~~IvtVt~~~meril~r-~Gw 158 (209)
T COG3916 131 EYALARGITGIVTVTDTGMERILRR-AGW 158 (209)
T ss_pred HHHHHcCCceEEEEEchHHHHHHHH-cCC
Confidence 9999999999997666555555444 554
No 168
>PLN02638 cellulose synthase A (UDP-forming), catalytic subunit
Probab=42.57 E-value=16 Score=47.37 Aligned_cols=60 Identities=25% Similarity=0.693 Sum_probs=47.3
Q ss_pred cCCcccccccCccCCcCcccccCCCCceecccCCCcccccccCCCCCCCCCCcccccccccccccc
Q 002334 541 NGLGIICHCCNSEVSPSQFEAHADGGNLLPCDGCPRAFHKECASLSSIPQGDWYCKYCQNMFERKR 606 (935)
Q Consensus 541 ~~~~i~C~~C~~eiSpS~FE~hadgG~Ll~CD~Cp~afH~~CL~L~~vPeg~W~Cp~C~~~~~~ek 606 (935)
.-++.+|.+|+.++-.. ++|.-.+-|..|.-..+..|+.- +..+|.=.||.|+..+.+.+
T Consensus 14 ~~~~qiCqICGD~vg~~-----~~Ge~FVAC~eC~FPVCrpCYEY-Er~eG~q~CPqCktrYkr~k 73 (1079)
T PLN02638 14 HGGGQVCQICGDNVGKT-----VDGEPFVACDVCAFPVCRPCYEY-ERKDGNQSCPQCKTKYKRHK 73 (1079)
T ss_pred ccCCceeeecccccCcC-----CCCCEEEEeccCCCccccchhhh-hhhcCCccCCccCCchhhhc
Confidence 34678999999876543 37777799999998888999953 56788999999998776433
No 169
>PF13901 DUF4206: Domain of unknown function (DUF4206)
Probab=42.51 E-value=21 Score=38.03 Aligned_cols=35 Identities=29% Similarity=0.646 Sum_probs=26.9
Q ss_pred cceeccCCCCCCCCCCCCceeeCCCCCCcCCCCCCC
Q 002334 646 GCLLCRGCDFSKSGFGPRTILLCDQCEREFHVGCLK 681 (935)
Q Consensus 646 ~C~iC~~~df~~sgf~~~tLL~CDqCdr~YHv~CL~ 681 (935)
.|.+|...+ -.=.|+......|..|...||..|..
T Consensus 154 iCe~C~~~~-~IfPF~~~~~~~C~~C~~v~H~~C~~ 188 (202)
T PF13901_consen 154 ICEICNSDD-IIFPFQIDTTVRCPKCKSVFHKSCFR 188 (202)
T ss_pred CCccCCCCC-CCCCCCCCCeeeCCcCccccchhhcC
Confidence 388887543 22346666889999999999999996
No 170
>TIGR03244 arg_catab_AstA arginine N-succinyltransferase. In many bacteria, the arginine succinyltransferase (ast) pathway operon consists of five genes, including this protein, arginine N-succinyltransferase (EC 2.3.1.109). In a few species, such as Pseudomonas aeruginosa, the member of this family is encoded adjacent to a paralog, and the two polypeptides form a heterodimeric enzyme, active on both arginine and ornithine. In such species, this polypeptide may be treated as the beta subunit of an enzyme that may be named either arginine N-succinyltransferase (AST) or arginine and orthithine N-succinyltransferase (AOST).
Probab=41.40 E-value=45 Score=38.48 Aligned_cols=49 Identities=16% Similarity=0.052 Sum_probs=38.0
Q ss_pred ceEEEEEee--CCeEEEEEEEEEeC------------------------------------CeeEEEeeeEeecCccCCC
Q 002334 802 GMYCAILTV--NSSVVSAGILRVFG------------------------------------QEVAELPLVATSKINHGKG 843 (935)
Q Consensus 802 GfY~~VL~~--~~~vVsaA~lrv~g------------------------------------~~vAElplVAT~~~yRgqG 843 (935)
.-|.+||+. .|+|||++.|...- ++..||--+-.+++||+-|
T Consensus 54 ~~YlFVLEDt~tg~vvGts~I~a~vG~~~PfY~yr~~~~vhaS~~L~v~~~~~~L~l~nd~tG~SElctLfL~p~~R~~~ 133 (336)
T TIGR03244 54 QGYLFVLEDTETGTVAGVSAIEAAVGLEEPFYNYRVGTVVHASKELGIYKALETLFLSNDLTGYSELCTLFLDPDYRKGG 133 (336)
T ss_pred ccEEEEEEeCCCCeEEEEEeEEecccCCCCCEEEEcCceeecCcccCCceeeeeEEeeccCCCCeeeEEEEECHHHcCCc
Confidence 468899996 68999988654311 4577888888999999999
Q ss_pred hhHHHHH
Q 002334 844 YFQLLFA 850 (935)
Q Consensus 844 ~gr~L~~ 850 (935)
.|+.|-.
T Consensus 134 ~G~LLSr 140 (336)
T TIGR03244 134 NGRLLSK 140 (336)
T ss_pred chhhHHH
Confidence 9977643
No 171
>PLN02436 cellulose synthase A
Probab=41.37 E-value=20 Score=46.61 Aligned_cols=60 Identities=22% Similarity=0.610 Sum_probs=46.9
Q ss_pred cCCcccccccCccCCcCcccccCCCCceecccCCCcccccccCCCCCCCCCCcccccccccccccc
Q 002334 541 NGLGIICHCCNSEVSPSQFEAHADGGNLLPCDGCPRAFHKECASLSSIPQGDWYCKYCQNMFERKR 606 (935)
Q Consensus 541 ~~~~i~C~~C~~eiSpS~FE~hadgG~Ll~CD~Cp~afH~~CL~L~~vPeg~W~Cp~C~~~~~~ek 606 (935)
.-++.+|.+|+..+-.+ +||.-.+-|..|.-..+..|+.- +..+|.-.||.|+..+.+.+
T Consensus 33 ~~~~~iCqICGD~Vg~t-----~dGe~FVACn~C~fpvCr~Cyey-er~eg~~~Cpqckt~Y~r~k 92 (1094)
T PLN02436 33 ELSGQTCQICGDEIELT-----VDGEPFVACNECAFPVCRPCYEY-ERREGNQACPQCKTRYKRIK 92 (1094)
T ss_pred ccCCccccccccccCcC-----CCCCEEEeeccCCCccccchhhh-hhhcCCccCcccCCchhhcc
Confidence 34678999999876443 37777799999998888999953 56788999999998766433
No 172
>TIGR03245 arg_AOST_alph arginine/ornithine succinyltransferase, alpha subunit. In some bacteria, including Pseudomonas aeruginosa, the astB gene (arginine N-succinyltransferase) is replaced by tandem paralogs that form a heterodimer. This heterodimer from P. aeruginosa is characterized as arginine and ornithine N-2 succinyltransferase (AOST). Members of this protein family represent the less widespread paralog, designated AruI, or arginine/ornithine succinyltransferase, alpha subunit.
Probab=40.38 E-value=44 Score=38.49 Aligned_cols=49 Identities=10% Similarity=-0.020 Sum_probs=38.0
Q ss_pred ceEEEEEee--CCeEEEEEEEEEeC------------------------------------CeeEEEeeeEeecCccCCC
Q 002334 802 GMYCAILTV--NSSVVSAGILRVFG------------------------------------QEVAELPLVATSKINHGKG 843 (935)
Q Consensus 802 GfY~~VL~~--~~~vVsaA~lrv~g------------------------------------~~vAElplVAT~~~yRgqG 843 (935)
-.|.+||+. .|+|||++.|...- ++..||--+-.+++||+-|
T Consensus 55 ~~YlFVLEDt~tg~vvGts~I~a~vG~~~PfY~yr~~~~vhaS~~L~v~~~~~~L~l~nd~tG~sElctLfL~p~~R~~~ 134 (336)
T TIGR03245 55 ERYLFVLEDTETGKLLGTSSIVASAGYGEPFYSYRNDTLIHASRELKVNNKIHVLYMCHELTGSSLLCSFYVDPRLRKTE 134 (336)
T ss_pred ccEEEEEEeCCCCcEEEEEeEEecccCCCCCEEEEcCceeecCcccCCccceeeEEeeccCCCCeeeEEEEECHHHcCCC
Confidence 478999995 68999988654311 4578888889999999999
Q ss_pred hhHHHHH
Q 002334 844 YFQLLFA 850 (935)
Q Consensus 844 ~gr~L~~ 850 (935)
.|+.|-.
T Consensus 135 ~G~lLSr 141 (336)
T TIGR03245 135 AAELLSR 141 (336)
T ss_pred chhHHHH
Confidence 9977643
No 173
>KOG1246 consensus DNA-binding protein jumonji/RBP2/SMCY, contains JmjC domain [General function prediction only]
Probab=40.30 E-value=21 Score=46.02 Aligned_cols=48 Identities=31% Similarity=0.877 Sum_probs=38.4
Q ss_pred cceeccCCCCCCCCCCCCceeeCCCCCCcCCCCCCCCCcCCccCCCCCCCceecCCccch
Q 002334 646 GCLLCRGCDFSKSGFGPRTILLCDQCEREFHVGCLKKHKMADLRELPKGKWFCCMDCSRI 705 (935)
Q Consensus 646 ~C~iC~~~df~~sgf~~~tLL~CDqCdr~YHv~CL~p~~~~~L~evP~g~WfCc~~C~~i 705 (935)
.|..|.+.. .+..+ .|+.|...||..|+.+ +++.+|.+.|.| ..|...
T Consensus 157 ~~~~~~k~~------~~~~~-~~~~~~~~~~~~~~~~----~~~~~~~~~~~~-~~~~~~ 204 (904)
T KOG1246|consen 157 QCNTCSKGK------EEKLL-LCDSCDDSYHTYCLRP----PLTRVPDGDWRC-PKCIPT 204 (904)
T ss_pred hhhccccCC------Cccce-ecccccCcccccccCC----CCCcCCcCcccC-Cccccc
Confidence 488887643 23344 9999999999999987 788999999997 778655
No 174
>TIGR03243 arg_catab_AOST arginine and ornithine succinyltransferase subunits. In many bacteria, the sole member of this protein family is arginine N-succinyltransferase (EC 2.3.1.109), the AstA protein of the arginine succinyltransferase (ast) pathway. However, in Pseudomonas aeruginosa and several other species, a tandem gene pair encodes alpha and beta subunits of a heterodimer that is designated arginine and ornithine succinyltransferase (AOST).
Probab=40.12 E-value=46 Score=38.37 Aligned_cols=49 Identities=16% Similarity=0.053 Sum_probs=38.2
Q ss_pred ceEEEEEee--CCeEEEEEEEEEeC------------------------------------CeeEEEeeeEeecCccCCC
Q 002334 802 GMYCAILTV--NSSVVSAGILRVFG------------------------------------QEVAELPLVATSKINHGKG 843 (935)
Q Consensus 802 GfY~~VL~~--~~~vVsaA~lrv~g------------------------------------~~vAElplVAT~~~yRgqG 843 (935)
-.|.+||+. .|+|||++.|...- ++..||--+-.+++||+-|
T Consensus 54 ~~YlFVLED~~tg~vvGts~I~a~vG~~~PfY~yrv~~~vhaS~~L~v~~~~~~L~l~nd~tG~sElctLfL~p~~R~~~ 133 (335)
T TIGR03243 54 EGYLFVLEDTETGTVAGVSAIEAAVGLDEPFYNYRVGTLVHASRELGVYNKIPTLTLSNDLTGSSELCTLFLDPDYRKGG 133 (335)
T ss_pred ccEEEEEEeCCCCeEEEEEeEEecccCCCCCEEEEcCceeecCcccCCccceeeEEeeccCCCCeeeEEEEECHHHcCCC
Confidence 479999995 68999988654311 4578888889999999999
Q ss_pred hhHHHHH
Q 002334 844 YFQLLFA 850 (935)
Q Consensus 844 ~gr~L~~ 850 (935)
.|+.|-.
T Consensus 134 ~G~LLSr 140 (335)
T TIGR03243 134 NGRLLSR 140 (335)
T ss_pred chhhHHH
Confidence 9977643
No 175
>PF13832 zf-HC5HC2H_2: PHD-zinc-finger like domain
Probab=40.07 E-value=15 Score=34.82 Aligned_cols=31 Identities=35% Similarity=0.952 Sum_probs=26.0
Q ss_pred CcccccccCccCCcCcccccCCCCceecccC--CCcccccccCC
Q 002334 543 LGIICHCCNSEVSPSQFEAHADGGNLLPCDG--CPRAFHKECAS 584 (935)
Q Consensus 543 ~~i~C~~C~~eiSpS~FE~hadgG~Ll~CD~--Cp~afH~~CL~ 584 (935)
....|.+|++ ..|-.+.|.. |..+||..|.-
T Consensus 54 ~~~~C~iC~~-----------~~G~~i~C~~~~C~~~fH~~CA~ 86 (110)
T PF13832_consen 54 FKLKCSICGK-----------SGGACIKCSHPGCSTAFHPTCAR 86 (110)
T ss_pred cCCcCcCCCC-----------CCceeEEcCCCCCCcCCCHHHHH
Confidence 3568999996 4688899986 99999999983
No 176
>PRK10456 arginine succinyltransferase; Provisional
Probab=39.51 E-value=45 Score=38.59 Aligned_cols=50 Identities=18% Similarity=0.036 Sum_probs=38.2
Q ss_pred cceEEEEEee--CCeEEEEEEEEEeC------------------------------------CeeEEEeeeEeecCccCC
Q 002334 801 GGMYCAILTV--NSSVVSAGILRVFG------------------------------------QEVAELPLVATSKINHGK 842 (935)
Q Consensus 801 ~GfY~~VL~~--~~~vVsaA~lrv~g------------------------------------~~vAElplVAT~~~yRgq 842 (935)
...|.+||+. .|+|||++.|...- ++..||--+-.+++||+-
T Consensus 55 ~~~YlFVLED~~tg~vvGts~I~a~vG~~~PfY~yr~~~~vhaS~~L~v~~~~~~L~l~nd~tG~sElctLfl~p~~R~~ 134 (344)
T PRK10456 55 EQGYVFVLEDSETGTVAGICAIEVAVGLNDPWYNYRVGTLVHASKELNVYNALPTLFLSNDHTGSSELCTLFLDPDWRKE 134 (344)
T ss_pred CccEEEEEEeCCCCcEEEEEeEEecccCCCCCEEEEcCceeecCcccCCceeeeeEEeeccCCCCceeEEEEECHHHcCC
Confidence 3478899995 68999988654311 456788888899999999
Q ss_pred ChhHHHHH
Q 002334 843 GYFQLLFA 850 (935)
Q Consensus 843 G~gr~L~~ 850 (935)
|.|+.|-.
T Consensus 135 ~~G~LLSr 142 (344)
T PRK10456 135 GNGYLLSK 142 (344)
T ss_pred CchhHHHH
Confidence 99977643
No 177
>PF11793 FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A.
Probab=37.91 E-value=14 Score=32.88 Aligned_cols=34 Identities=26% Similarity=0.710 Sum_probs=13.0
Q ss_pred cceeccCCCCCCCCCCCCceeeCC--CCCCcCCCCCCCC
Q 002334 646 GCLLCRGCDFSKSGFGPRTILLCD--QCEREFHVGCLKK 682 (935)
Q Consensus 646 ~C~iC~~~df~~sgf~~~tLL~CD--qCdr~YHv~CL~p 682 (935)
.|.||...-. ..+....+.|+ .|.+.||..||..
T Consensus 4 ~C~IC~~~~~---~~~~~p~~~C~n~~C~~~fH~~CL~~ 39 (70)
T PF11793_consen 4 ECGICYSYRL---DDGEIPDVVCPNPSCGKKFHLLCLSE 39 (70)
T ss_dssp S-SSS--SS----TT-----B--S-TT----B-SGGGHH
T ss_pred CCCcCCcEec---CCCCcCceEcCCcccCCHHHHHHHHH
Confidence 3889976421 11234568998 9999999999965
No 178
>KOG2036 consensus Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only]
Probab=37.42 E-value=27 Score=43.55 Aligned_cols=29 Identities=14% Similarity=0.123 Sum_probs=24.8
Q ss_pred EEEeeeEeecCccCCChhHHHHHHHHHHh
Q 002334 828 AELPLVATSKINHGKGYFQLLFACIEKLL 856 (935)
Q Consensus 828 AElplVAT~~~yRgqG~gr~L~~~IE~~L 856 (935)
|+|-+|||+|+|++-|||.+-++-+.+..
T Consensus 615 aRIVRIAvhP~y~~MGYGsrAvqLL~~y~ 643 (1011)
T KOG2036|consen 615 ARIVRIAVHPEYQKMGYGSRAVQLLTDYF 643 (1011)
T ss_pred ceEEEEEeccchhccCccHHHHHHHHHHH
Confidence 66778999999999999998888777654
No 179
>PF13901 DUF4206: Domain of unknown function (DUF4206)
Probab=37.33 E-value=29 Score=36.90 Aligned_cols=46 Identities=33% Similarity=0.725 Sum_probs=34.2
Q ss_pred CCcccccccCcc--CCcCcccccCCCCceecccCCCcccccccCCCCCCCCCCcccccccc
Q 002334 542 GLGIICHCCNSE--VSPSQFEAHADGGNLLPCDGCPRAFHKECASLSSIPQGDWYCKYCQN 600 (935)
Q Consensus 542 ~~~i~C~~C~~e--iSpS~FE~hadgG~Ll~CD~Cp~afH~~CL~L~~vPeg~W~Cp~C~~ 600 (935)
..|.+|.+|+.. +-|- +-.....|..|...||..|..- -.||.|..
T Consensus 150 ~kGfiCe~C~~~~~IfPF------~~~~~~~C~~C~~v~H~~C~~~-------~~CpkC~R 197 (202)
T PF13901_consen 150 QKGFICEICNSDDIIFPF------QIDTTVRCPKCKSVFHKSCFRK-------KSCPKCAR 197 (202)
T ss_pred hCCCCCccCCCCCCCCCC------CCCCeeeCCcCccccchhhcCC-------CCCCCcHh
Confidence 557889999853 3333 3467899999999999999951 23999963
No 180
>KOG1493 consensus Anaphase-promoting complex (APC), subunit 11 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=37.33 E-value=5.1 Score=36.72 Aligned_cols=59 Identities=20% Similarity=0.404 Sum_probs=34.7
Q ss_pred cccccccCccCCcCc--ccccCCCCceecccCCCcccccccCC-CCCCCCCCccccccccccc
Q 002334 544 GIICHCCNSEVSPSQ--FEAHADGGNLLPCDGCPRAFHKECAS-LSSIPQGDWYCKYCQNMFE 603 (935)
Q Consensus 544 ~i~C~~C~~eiSpS~--FE~hadgG~Ll~CD~Cp~afH~~CL~-L~~vPeg~W~Cp~C~~~~~ 603 (935)
+..|++|+-++..+- -..-.|.=.|+.- .|.+.||..|+. .-..|...-.||.|++.++
T Consensus 20 ~e~CGiCRm~Fdg~Cp~Ck~PgDdCPLv~G-~C~h~fh~hCI~~wl~~~tsq~~CPmcRq~~~ 81 (84)
T KOG1493|consen 20 DETCGICRMPFDGCCPDCKLPGDDCPLVWG-YCLHAFHAHCILKWLNTPTSQGQCPMCRQTWQ 81 (84)
T ss_pred CCccceEecccCCcCCCCcCCCCCCccHHH-HHHHHHHHHHHHHHhcCccccccCCcchheeE
Confidence 348999986543210 0000011122222 577889999984 3456666789999998653
No 181
>PLN02189 cellulose synthase
Probab=37.31 E-value=25 Score=45.71 Aligned_cols=58 Identities=22% Similarity=0.592 Sum_probs=45.9
Q ss_pred CCcccccccCccCCcCcccccCCCCceecccCCCcccccccCCCCCCCCCCccccccccccccc
Q 002334 542 GLGIICHCCNSEVSPSQFEAHADGGNLLPCDGCPRAFHKECASLSSIPQGDWYCKYCQNMFERK 605 (935)
Q Consensus 542 ~~~i~C~~C~~eiSpS~FE~hadgG~Ll~CD~Cp~afH~~CL~L~~vPeg~W~Cp~C~~~~~~e 605 (935)
-++.+|.+|+.++... ++|.-.+-|..|.-..+..|+.- +..+|.-.||.|+..+.+.
T Consensus 32 ~~~~~C~iCgd~vg~~-----~~g~~fvaC~~C~fpvCr~Cyey-er~eg~q~CpqCkt~Y~r~ 89 (1040)
T PLN02189 32 LDGQVCEICGDEIGLT-----VDGDLFVACNECGFPVCRPCYEY-ERREGTQNCPQCKTRYKRL 89 (1040)
T ss_pred ccCccccccccccCcC-----CCCCEEEeeccCCCccccchhhh-hhhcCCccCcccCCchhhc
Confidence 4677999999876543 36777799999998888899953 5678899999999876643
No 182
>KOG0827 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=36.92 E-value=7.9 Score=44.86 Aligned_cols=47 Identities=32% Similarity=0.625 Sum_probs=31.2
Q ss_pred ccccccCccCCcCcccccCCCCceecccCCCcccccccCCCCCCCCCC-c--cccccccc
Q 002334 545 IICHCCNSEVSPSQFEAHADGGNLLPCDGCPRAFHKECASLSSIPQGD-W--YCKYCQNM 601 (935)
Q Consensus 545 i~C~~C~~eiSpS~FE~hadgG~Ll~CD~Cp~afH~~CL~L~~vPeg~-W--~Cp~C~~~ 601 (935)
-.|.+|.. +-| ...++..=..|++.||..|| ..|-+++ | -||.|+-.
T Consensus 5 A~C~Ic~d-~~p-------~~~~l~~i~~cGhifh~~cl--~qwfe~~Ps~R~cpic~ik 54 (465)
T KOG0827|consen 5 AECHICID-GRP-------NDHELGPIGTCGHIFHTTCL--TQWFEGDPSNRGCPICQIK 54 (465)
T ss_pred ceeeEecc-CCc-------cccccccccchhhHHHHHHH--HHHHccCCccCCCCceeec
Confidence 46999952 221 12345555569999999999 5566653 6 69999843
No 183
>COG0143 MetG Methionyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=36.89 E-value=38 Score=41.54 Aligned_cols=30 Identities=27% Similarity=0.486 Sum_probs=21.2
Q ss_pred CcceeccCCCCCCCCCCCCceeeCCCCCCcCCCCCCCC
Q 002334 645 SGCLLCRGCDFSKSGFGPRTILLCDQCEREFHVGCLKK 682 (935)
Q Consensus 645 ~~C~iC~~~df~~sgf~~~tLL~CDqCdr~YHv~CL~p 682 (935)
+.|..|+..+ ..-=+||.|++.|+..+|..
T Consensus 143 g~cp~cg~~~--------arGD~Ce~Cg~~~~P~~l~~ 172 (558)
T COG0143 143 GTCPKCGGED--------ARGDQCENCGRTLDPTELIN 172 (558)
T ss_pred ccCCCcCccc--------cCcchhhhccCcCCchhcCC
Confidence 4588888432 11127999999999999743
No 184
>PF02591 DUF164: Putative zinc ribbon domain; InterPro: IPR003743 This entry describes proteins of unknown function.
Probab=36.37 E-value=12 Score=31.65 Aligned_cols=34 Identities=26% Similarity=0.681 Sum_probs=28.0
Q ss_pred CcccccccCccCCcCcccccCCCCceecccCCCc
Q 002334 543 LGIICHCCNSEVSPSQFEAHADGGNLLPCDGCPR 576 (935)
Q Consensus 543 ~~i~C~~C~~eiSpS~FE~hadgG~Ll~CD~Cp~ 576 (935)
++..|.-|+..+++..+..-..+.+++.|+.|++
T Consensus 21 ~~~~C~gC~~~l~~~~~~~i~~~~~i~~Cp~CgR 54 (56)
T PF02591_consen 21 EGGTCSGCHMELPPQELNEIRKGDEIVFCPNCGR 54 (56)
T ss_pred eCCccCCCCEEcCHHHHHHHHcCCCeEECcCCCc
Confidence 4458999999999887776666789999999986
No 185
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=36.15 E-value=15 Score=43.50 Aligned_cols=46 Identities=22% Similarity=0.338 Sum_probs=31.9
Q ss_pred CcccccccCccCCcCcccccCCCCceecccCCCcccccccCCCCCCCCCCcccccccc
Q 002334 543 LGIICHCCNSEVSPSQFEAHADGGNLLPCDGCPRAFHKECASLSSIPQGDWYCKYCQN 600 (935)
Q Consensus 543 ~~i~C~~C~~eiSpS~FE~hadgG~Ll~CD~Cp~afH~~CL~L~~vPeg~W~Cp~C~~ 600 (935)
+-.-|.+|.+.+.+| -..+.---|.++||-.|+. .|. +-.||-|+.
T Consensus 174 ELPTCpVCLERMD~s--------~~gi~t~~c~Hsfh~~cl~--~w~--~~scpvcR~ 219 (493)
T KOG0804|consen 174 ELPTCPVCLERMDSS--------TTGILTILCNHSFHCSCLM--KWW--DSSCPVCRY 219 (493)
T ss_pred cCCCcchhHhhcCcc--------ccceeeeecccccchHHHh--hcc--cCcChhhhh
Confidence 557799999877653 2334445678999999994 443 467888874
No 186
>PRK01305 arginyl-tRNA-protein transferase; Provisional
Probab=35.61 E-value=1.8e+02 Score=32.11 Aligned_cols=112 Identities=13% Similarity=0.075 Sum_probs=68.1
Q ss_pred CcceeEccCCCCChhhHHHHHHHHHhhhhcCCCcccCCCCCCccccccccccCCCceecceEEEEEeeCCeEEEEEEEEE
Q 002334 743 DVRWRLLSGKAATPETRLLLSQAVAIFHDCFDPIVDSISGRDLIPSMVYGRNLRGQEFGGMYCAILTVNSSVVSAGILRV 822 (935)
Q Consensus 743 dikWqLLsgk~~s~e~~skLa~AL~If~EcF~Pivd~rSgrDLIp~MVygr~~~~~~f~GfY~~VL~~~~~vVsaA~lrv 822 (935)
++.+.+.. ...+.|...+...=....|.--+ + ++.+ .+--..+|.+.... + +.+-...+|++|++|.+-+
T Consensus 94 dl~v~~~~-~~~~~E~~~Ly~rY~~~rH~dg~-m-~~~~-~~~y~~Fl~~~~~~-----t-~~~ey~~~g~LiaVav~D~ 163 (240)
T PRK01305 94 DLVVRVLP-PEFTEEHYALYRRYLRARHADGG-M-DPPS-RDQYAQFLEDSWVN-----T-RFIEFRGDGKLVAVAVTDV 163 (240)
T ss_pred CeEEEEcC-CCCCHHHHHHHHHHHHHhcCCCC-C-CCCC-HHHHHHHHhcCCCC-----c-EEEEEEeCCeEEEEEEEec
Confidence 44454433 22345566666666666663211 0 0101 11112344443321 1 2222347899999999988
Q ss_pred eCCeeEEEeeeEeecCccCCChhHHHHHHHHHHhhhcCccEEE
Q 002334 823 FGQEVAELPLVATSKINHGKGYFQLLFACIEKLLSFLRVKSIV 865 (935)
Q Consensus 823 ~g~~vAElplVAT~~~yRgqG~gr~L~~~IE~~L~~lgV~~Lv 865 (935)
..+.+.-|-.+ =+|+|-..++|...+..-.++++.+|.+.+-
T Consensus 164 l~d~lSAVY~F-yDPd~~~~SLG~~~iL~qI~~ak~~gl~y~Y 205 (240)
T PRK01305 164 LDDGLSAVYTF-YDPDEEHRSLGTFAILWQIELAKRLGLPYVY 205 (240)
T ss_pred cCCceeeEEEe-eCCCccccCCHHHHHHHHHHHHHHcCCCeEe
Confidence 88776655333 4888888889998888888999999999988
No 187
>KOG1298 consensus Squalene monooxygenase [Lipid transport and metabolism]
Probab=34.05 E-value=32 Score=40.50 Aligned_cols=185 Identities=22% Similarity=0.256 Sum_probs=96.5
Q ss_pred cccccccchhhHHhhhcccccceeEEeEEeeEEEEEEeccCCCCCCcccccchhhhhhhhcccccchHHHHHHHhhhccc
Q 002334 21 LPQAGIQASDCVKAACENVRCKRFKVTKVNGFIVYSRVKRSRFSNSDDLLEDDVIDKRINSKIHEGRINKVVKNVLNENG 100 (935)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (935)
|-+.|++ |||+-. .-.+|+|+-+|--=+.-.-+-...-.++|+- -...|.||..|-+.+..
T Consensus 97 L~~LGl~--Dcve~I---------DAQ~v~Gy~ifk~gk~v~~pyP~~~f~~d~~----GrsFhnGRFvq~lR~ka---- 157 (509)
T KOG1298|consen 97 LSKLGLE--DCVEGI---------DAQRVTGYAIFKDGKEVDLPYPLKNFPSDPS----GRSFHNGRFVQRLRKKA---- 157 (509)
T ss_pred HHHhCHH--HHhhcc---------cceEeeeeEEEeCCceeeccCCCcCCCCCcc----cceeeccHHHHHHHHHH----
Confidence 3444554 898643 3456899999964333332222222345543 44689999999887732
Q ss_pred chhhhHHhhh-hhhcchHHHHHHHH--hhCCCCCCccCCCCCcccceecCCCCcccc--cCccc---c--ccCCcccCCC
Q 002334 101 ILESVVEEEN-QLVQMTVENVIEET--VKGKKAPICKEEPISKVECFPRKEGGSEVS--NGLNK---K--CLKRPSAMKP 170 (935)
Q Consensus 101 ~~~~~~~~~~-~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~---~--~~~trs~lk~ 170 (935)
..++| ++.|=||..++||- +||.+ ..+++|.+.+ .++.. . -+|+||+-++
T Consensus 158 -----~slpNV~~eeGtV~sLlee~gvvkGV~---------------yk~k~gee~~~~ApLTvVCDGcfSnlRrsL~~~ 217 (509)
T KOG1298|consen 158 -----ASLPNVRLEEGTVKSLLEEEGVVKGVT---------------YKNKEGEEVEAFAPLTVVCDGCFSNLRRSLCDP 217 (509)
T ss_pred -----hcCCCeEEeeeeHHHHHhccCeEEeEE---------------EecCCCceEEEecceEEEecchhHHHHHHhcCC
Confidence 12222 22233555544432 33332 3344444443 34432 2 4788999999
Q ss_pred CCCcccccccccc--CCCCC--------------------ccchhhhhhhhcCCCCCCCCcccccccc-ccccCCCCCch
Q 002334 171 KVEPVEVLVTQSE--GFGNE--------------------SMSLIEVEAIAEGSALTSPKKNLELKMS-KKISLNKKPMT 227 (935)
Q Consensus 171 k~e~~~~~~~~~~--~~~~~--------------------~~~~~~~~~~~~~s~~~~~~~~~~~k~~-kk~~~~~~p~~ 227 (935)
||+++.+.-.+.- +-... +++++++--. -+++.-|+-.|.||+.. |+..--.+|..
T Consensus 218 ~v~~V~S~fVG~vl~N~~l~~p~hghvIL~~pspil~Y~ISStEvRcl~~-v~g~~~Psi~~gem~~~mk~~v~PqiP~~ 296 (509)
T KOG1298|consen 218 KVEEVPSYFVGLVLKNCRLPAPNHGHVILSKPSPILVYQISSTEVRCLVD-VPGQKLPSIANGEMATYMKESVAPQIPEK 296 (509)
T ss_pred cccccchheeeeeecCCCCCCCCcceEEecCCCcEEEEEecchheEEEEe-cCcccCCcccchhHHHHHHHhhCcCCCHH
Confidence 9998765443321 11000 0111111111 12334456667676544 44445678999
Q ss_pred hHHhhhcC----CCCCceEEEe
Q 002334 228 VTELFETG----LLDGVSVVYM 245 (935)
Q Consensus 228 vk~Ll~tg----lleg~~V~Y~ 245 (935)
+|+-+..+ -+--+|=+||
T Consensus 297 lR~~F~~av~~g~irsmpn~~m 318 (509)
T KOG1298|consen 297 LRESFLEAVDEGNIRSMPNSSM 318 (509)
T ss_pred HHHHHHHHhhccchhcCccccC
Confidence 99886544 4445555665
No 188
>KOG1246 consensus DNA-binding protein jumonji/RBP2/SMCY, contains JmjC domain [General function prediction only]
Probab=31.96 E-value=32 Score=44.36 Aligned_cols=49 Identities=33% Similarity=0.815 Sum_probs=38.4
Q ss_pred CcccccccCccCCcCcccccCCCCceecccCCCcccccccCC--CCCCCCCCccccccccc
Q 002334 543 LGIICHCCNSEVSPSQFEAHADGGNLLPCDGCPRAFHKECAS--LSSIPQGDWYCKYCQNM 601 (935)
Q Consensus 543 ~~i~C~~C~~eiSpS~FE~hadgG~Ll~CD~Cp~afH~~CL~--L~~vPeg~W~Cp~C~~~ 601 (935)
....|..|.+.-. . .++.|++|...||..|.. ++.+++++|.|+.|...
T Consensus 154 ~~~~~~~~~k~~~---------~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (904)
T KOG1246|consen 154 DYPQCNTCSKGKE---------E-KLLLCDSCDDSYHTYCLRPPLTRVPDGDWRCPKCIPT 204 (904)
T ss_pred cchhhhccccCCC---------c-cceecccccCcccccccCCCCCcCCcCcccCCccccc
Confidence 4456888886321 2 344999999999999996 67899999999999754
No 189
>PLN02915 cellulose synthase A [UDP-forming], catalytic subunit
Probab=31.42 E-value=33 Score=44.57 Aligned_cols=56 Identities=25% Similarity=0.600 Sum_probs=45.0
Q ss_pred CcccccccCccCCcCcccccCCCCceecccCCCcccccccCCCCCCCCCCcccccccccccc
Q 002334 543 LGIICHCCNSEVSPSQFEAHADGGNLLPCDGCPRAFHKECASLSSIPQGDWYCKYCQNMFER 604 (935)
Q Consensus 543 ~~i~C~~C~~eiSpS~FE~hadgG~Ll~CD~Cp~afH~~CL~L~~vPeg~W~Cp~C~~~~~~ 604 (935)
.+.+|.+|+..+-.. ++|.-.+-|..|.-..+..|+.- +..+|.=.||+|+..+.+
T Consensus 14 ~~~~c~iCGd~vg~~-----~~Ge~FVAC~eC~fpvCr~cyey-e~~~g~~~cp~c~t~y~~ 69 (1044)
T PLN02915 14 DAKTCRVCGDEVGVK-----EDGQPFVACHVCGFPVCKPCYEY-ERSEGNQCCPQCNTRYKR 69 (1044)
T ss_pred CcchhhccccccCcC-----CCCCEEEEeccCCCccccchhhh-hhhcCCccCCccCCchhh
Confidence 578999999876543 37777799999998888899953 567889999999987654
No 190
>PHA02926 zinc finger-like protein; Provisional
Probab=30.15 E-value=25 Score=38.36 Aligned_cols=59 Identities=22% Similarity=0.383 Sum_probs=33.4
Q ss_pred cCCcccccccCccCCcCcccccCCCCceecccCCCcccccccCC-CCCC---CCCCcccccccccc
Q 002334 541 NGLGIICHCCNSEVSPSQFEAHADGGNLLPCDGCPRAFHKECAS-LSSI---PQGDWYCKYCQNMF 602 (935)
Q Consensus 541 ~~~~i~C~~C~~eiSpS~FE~hadgG~Ll~CD~Cp~afH~~CL~-L~~v---Peg~W~Cp~C~~~~ 602 (935)
...+..|++|.+.+..-.-+...-.|-| +.|.+.|+..|+. +... ......||.|+..+
T Consensus 167 ~SkE~eCgICmE~I~eK~~~~eRrFGIL---~~CnHsFCl~CIr~Wr~~r~~~~~~rsCPiCR~~f 229 (242)
T PHA02926 167 VSKEKECGICYEVVYSKRLENDRYFGLL---DSCNHIFCITCINIWHRTRRETGASDNCPICRTRF 229 (242)
T ss_pred ccCCCCCccCcccccccccccccccccc---CCCCchHHHHHHHHHHHhccccCcCCcCCCCccee
Confidence 3456889999975421000000012333 4577889999984 2211 12357899999764
No 191
>KOG1632 consensus Uncharacterized PHD Zn-finger protein [General function prediction only]
Probab=29.91 E-value=29 Score=39.99 Aligned_cols=44 Identities=20% Similarity=0.480 Sum_probs=34.1
Q ss_pred ceeeCCCCCCcCCCCC--CCCCcCCccCCCCCCCceecCCccchhHHHHH
Q 002334 664 TILLCDQCEREFHVGC--LKKHKMADLRELPKGKWFCCMDCSRINSVLQN 711 (935)
Q Consensus 664 tLL~CDqCdr~YHv~C--L~p~~~~~L~evP~g~WfCc~~C~~i~~~Lqk 711 (935)
.++.||.|..+||..| ++. +-.+..+...|+| ..|......++.
T Consensus 74 ~~~~cd~C~~~~~~ec~~v~~---~~~e~p~~~~~~c-~~c~~~~~~~~~ 119 (345)
T KOG1632|consen 74 LMEQCDLCEDWYHGECWEVGT---AEKEAPKEDPKVC-DECKEAQDGMSE 119 (345)
T ss_pred hhhccccccccccccccccCc---hhhcCCccccccc-cccchhhhhhhh
Confidence 6789999999999999 654 3344445678999 999888766653
No 192
>COG5027 SAS2 Histone acetyltransferase (MYST family) [Chromatin structure and dynamics]
Probab=29.71 E-value=29 Score=40.02 Aligned_cols=75 Identities=17% Similarity=0.213 Sum_probs=44.5
Q ss_pred HHHHHHHHHhhhhcCCCcccCCCCCCccccccccccCCCceecceEEEEEeeCCeE----EEEEEEEEeCCeeEEEeeeE
Q 002334 759 RLLLSQAVAIFHDCFDPIVDSISGRDLIPSMVYGRNLRGQEFGGMYCAILTVNSSV----VSAGILRVFGQEVAELPLVA 834 (935)
Q Consensus 759 ~skLa~AL~If~EcF~Pivd~rSgrDLIp~MVygr~~~~~~f~GfY~~VL~~~~~v----VsaA~lrv~g~~vAElplVA 834 (935)
+..+.+-|-.+..+| +|++ |+| +|..+|--+||...|.. ||-=+=--.-.+--.|--|-
T Consensus 207 q~~~CrnLCLlsKlF---Ld~K--------tLY------yDVDpflFYvl~~~~~~~~h~vGyFSKEK~S~~~yNLaCIL 269 (395)
T COG5027 207 QRLYCRNLCLLSKLF---LDHK--------TLY------YDVDPFLFYVLTERGDTGCHLVGYFSKEKESEQDYNLACIL 269 (395)
T ss_pred hhhHHHHHHHHHHHH---hcCc--------eeE------EeccceEEEEEEEcCCcceeeeeeechhhcccccCceEEEE
Confidence 355677777777888 3331 222 35566655555654432 22211111112234577888
Q ss_pred eecCccCCChhHHHHH
Q 002334 835 TSKINHGKGYFQLLFA 850 (935)
Q Consensus 835 T~~~yRgqG~gr~L~~ 850 (935)
|.|.||++|||..|++
T Consensus 270 tLP~yQRrGYG~lLId 285 (395)
T COG5027 270 TLPPYQRRGYGKLLID 285 (395)
T ss_pred ecChhHhcccceEeee
Confidence 9999999999999876
No 193
>PRK13361 molybdenum cofactor biosynthesis protein A; Provisional
Probab=29.21 E-value=1.1e+02 Score=34.62 Aligned_cols=69 Identities=22% Similarity=0.265 Sum_probs=51.6
Q ss_pred eeeEEEEeCCeEEeeCcCCCCceeeCcchhhhccccccCCcccceeccCCccHHHHHHHhhcCCc-hhHHHHHHHHhcCC
Q 002334 251 SGLRGIIRDGGILCSCSLCNGCRVIPPSKFEIHACKQYRRASQYICFENGKSLLEVLRACRSVPL-PMLKATLQSALSSL 329 (935)
Q Consensus 251 ~~l~G~i~~~GilC~C~~C~~~~v~s~s~FE~HAG~~~~~p~~~I~lenG~sL~~v~~~~~~~~l-~~l~~~i~~~~g~~ 329 (935)
...-|.|...... +|..|| +--||+ ...+|.+ +|-++|.+|+++++. .+.. +.|.++|+.++..-
T Consensus 241 ~~~ig~I~~~s~~-fC~~Cn-r~rlt~-~G~l~~C---------l~~~~~~~l~~~l~~--~~~~~~~l~~~~~~~~~~k 306 (329)
T PRK13361 241 PIHIGFISPHSHN-FCHECN-RVRVTA-EGQLLLC---------LGNEHASDLRSILRE--GPGDIERLKAAILAAINLK 306 (329)
T ss_pred CeEEEEEcCCCcc-ccccCC-eEEEcc-CCcEEec---------CCCCCCcchHHHHhc--CCCcHHHHHHHHHHHHHcC
Confidence 4558999987776 999998 456666 6677776 677889999988765 4445 37999999988876
Q ss_pred CccC
Q 002334 330 PEEK 333 (935)
Q Consensus 330 ~~~~ 333 (935)
|...
T Consensus 307 ~~~~ 310 (329)
T PRK13361 307 PKGH 310 (329)
T ss_pred cccc
Confidence 5433
No 194
>TIGR02174 CXXU_selWTH selT/selW/selH selenoprotein domain. This model represents a domain found in both bacteria and animals, including animal proteins SelT, SelW, and SelH, all of which are selenoproteins. In a CXXC motif near the N-terminus of the domain, selenocysteine may replace the second Cys. Proteins with this domain may include an insert of about 70 amino acids. This model is broader than the current SelW model pfam05169 in Pfam.
Probab=28.49 E-value=38 Score=30.20 Aligned_cols=29 Identities=34% Similarity=0.680 Sum_probs=23.8
Q ss_pred ccceeEEeEEeeEEEEEEeccCCCCCCccc
Q 002334 40 RCKRFKVTKVNGFIVYSRVKRSRFSNSDDL 69 (935)
Q Consensus 40 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 69 (935)
+=-.|.|+ |||-+||||++..+|-..+.|
T Consensus 39 ~~G~Fev~-~~g~~v~sk~~~~~fp~~~~~ 67 (72)
T TIGR02174 39 TTGAFEVT-VNGQLVWSKLRGGGFPEPEEL 67 (72)
T ss_pred CCcEEEEE-ECCEEEEEeccCCCCCCHHHH
Confidence 44579997 799999999999998876654
No 195
>PF10497 zf-4CXXC_R1: Zinc-finger domain of monoamine-oxidase A repressor R1; InterPro: IPR018866 R1 is a transcription factor repressor that inhibits monoamine oxidase A gene expression. This domain is a four-CXXC zinc finger putative DNA-binding domain found at the C-terminal end of R1. The domain carries 12 cysteines of which four pairs are of the CXXC type [].
Probab=26.41 E-value=19 Score=34.77 Aligned_cols=52 Identities=27% Similarity=0.604 Sum_probs=32.5
Q ss_pred cceeccCCCCCCCCCCCCceeeC------CCC---CCcCCCCCCCCC-cCCccCCCCCCCceecCCccch
Q 002334 646 GCLLCRGCDFSKSGFGPRTILLC------DQC---EREFHVGCLKKH-KMADLRELPKGKWFCCMDCSRI 705 (935)
Q Consensus 646 ~C~iC~~~df~~sgf~~~tLL~C------DqC---dr~YHv~CL~p~-~~~~L~evP~g~WfCc~~C~~i 705 (935)
.|+.|+... .+..+.| ..| ...|--.||... ++...+.+...+|.| +.|..|
T Consensus 9 ~CHqCrqKt-------~~~~~~C~~~~~~~~C~~~~~~fC~~CL~~ryge~~~ev~~~~~W~C-P~Crgi 70 (105)
T PF10497_consen 9 TCHQCRQKT-------LDFKTICTGHWKNSSCRGCRGKFCGGCLRNRYGENVEEVLEDPNWKC-PKCRGI 70 (105)
T ss_pred CchhhcCCC-------CCCceEcCCCCCCCCCccCcceehHhHHHHHHhhhHHHHhcCCceEC-CCCCCe
Confidence 488898642 2334556 566 888989998654 221222345678999 778653
No 196
>KOG1829 consensus Uncharacterized conserved protein, contains C1, PH and RUN domains [Signal transduction mechanisms]
Probab=26.02 E-value=18 Score=44.30 Aligned_cols=36 Identities=17% Similarity=0.332 Sum_probs=26.6
Q ss_pred CcccccccCccCCcCcccccCCCCceecccCCCcccccccCC
Q 002334 543 LGIICHCCNSEVSPSQFEAHADGGNLLPCDGCPRAFHKECAS 584 (935)
Q Consensus 543 ~~i~C~~C~~eiSpS~FE~hadgG~Ll~CD~Cp~afH~~CL~ 584 (935)
.+-.|..|+..+.+. -....-.|+-++.-||..|..
T Consensus 339 Q~~~CAgC~~~i~~~------~~~~~R~C~y~G~y~C~~Ch~ 374 (580)
T KOG1829|consen 339 QNFRCAGCGHTIGPD------LEQRPRLCRYLGKYFCDCCHQ 374 (580)
T ss_pred cCceecccCCCcccc------cccchhHhhhhhhhhCchhcc
Confidence 345799999877642 235667888888889998984
No 197
>PF10367 Vps39_2: Vacuolar sorting protein 39 domain 2; InterPro: IPR019453 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised In Vps39 this domain is involved in localisation and in mediating the interactions with Vps11 [].
Probab=25.81 E-value=46 Score=30.68 Aligned_cols=33 Identities=21% Similarity=0.438 Sum_probs=22.1
Q ss_pred CCcccccccCccCCcCcccccCCCCceecccCCCcccccccCC
Q 002334 542 GLGIICHCCNSEVSPSQFEAHADGGNLLPCDGCPRAFHKECAS 584 (935)
Q Consensus 542 ~~~i~C~~C~~eiSpS~FE~hadgG~Ll~CD~Cp~afH~~CL~ 584 (935)
.++..|.+|++.+..+.| .---|++.||..|+.
T Consensus 76 ~~~~~C~vC~k~l~~~~f----------~~~p~~~v~H~~C~~ 108 (109)
T PF10367_consen 76 TESTKCSVCGKPLGNSVF----------VVFPCGHVVHYSCIK 108 (109)
T ss_pred CCCCCccCcCCcCCCceE----------EEeCCCeEEeccccc
Confidence 456779999998754332 222345889999973
No 198
>KOG1701 consensus Focal adhesion adaptor protein Paxillin and related LIM proteins [Signal transduction mechanisms]
Probab=25.69 E-value=68 Score=38.00 Aligned_cols=8 Identities=38% Similarity=1.373 Sum_probs=4.4
Q ss_pred ceeccCCC
Q 002334 647 CLLCRGCD 654 (935)
Q Consensus 647 C~iC~~~d 654 (935)
||.|.+.+
T Consensus 427 CY~CEDCg 434 (468)
T KOG1701|consen 427 CYKCEDCG 434 (468)
T ss_pred ceehhhcC
Confidence 66665543
No 199
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=25.09 E-value=28 Score=44.11 Aligned_cols=39 Identities=21% Similarity=0.528 Sum_probs=28.2
Q ss_pred ccccccCccCCcCcccccCCCCceecc-cCCCcccccccCCCCCCCCCCcccccccc
Q 002334 545 IICHCCNSEVSPSQFEAHADGGNLLPC-DGCPRAFHKECASLSSIPQGDWYCKYCQN 600 (935)
Q Consensus 545 i~C~~C~~eiSpS~FE~hadgG~Ll~C-D~Cp~afH~~CL~L~~vPeg~W~Cp~C~~ 600 (935)
..|..|...+ ++-.- =.|.++||+.|+. +++--||.|..
T Consensus 841 skCs~C~~~L------------dlP~VhF~CgHsyHqhC~e-----~~~~~CP~C~~ 880 (933)
T KOG2114|consen 841 SKCSACEGTL------------DLPFVHFLCGHSYHQHCLE-----DKEDKCPKCLP 880 (933)
T ss_pred eeecccCCcc------------ccceeeeecccHHHHHhhc-----cCcccCCccch
Confidence 3699998422 22222 2689999999996 67789999985
No 200
>COG5540 RING-finger-containing ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=24.99 E-value=24 Score=39.95 Aligned_cols=50 Identities=22% Similarity=0.421 Sum_probs=34.0
Q ss_pred cCCcccccccCccCCcCcccccCCCCceecccCCCcccccccCCCCCCCC-CCccccccccc
Q 002334 541 NGLGIICHCCNSEVSPSQFEAHADGGNLLPCDGCPRAFHKECASLSSIPQ-GDWYCKYCQNM 601 (935)
Q Consensus 541 ~~~~i~C~~C~~eiSpS~FE~hadgG~Ll~CD~Cp~afH~~CL~L~~vPe-g~W~Cp~C~~~ 601 (935)
.+.|..|.+|.+.+. -++-+.---|.+.||..|++ .|-. ....||-|+..
T Consensus 320 a~~GveCaICms~fi---------K~d~~~vlPC~H~FH~~Cv~--kW~~~y~~~CPvCrt~ 370 (374)
T COG5540 320 ADKGVECAICMSNFI---------KNDRLRVLPCDHRFHVGCVD--KWLLGYSNKCPVCRTA 370 (374)
T ss_pred cCCCceEEEEhhhhc---------ccceEEEeccCceechhHHH--HHHhhhcccCCccCCC
Confidence 355688999996543 22224444577999999994 4433 46889999864
No 201
>PF07649 C1_3: C1-like domain; InterPro: IPR011424 This short domain is rich in cysteines and histidines. The pattern of conservation is similar to that found in IPR002219 from INTERPRO. C1 domains are protein kinase C-like zinc finger structures. Diacylglycerol (DAG) kinases (DGKs) have a two or three commonly conserved cysteine-rich C1 domains []. DGKs modulate the balance between the two signaling lipids, DAG and phosphatidic acid (PA), by phosphorylating DAG to yield PA []. The PKD (protein kinase D) family are novel DAG receptors. They have twin C1 domains, designated C1a and C1b, which bind DAG or phorbol esters. Individual C1 domains differ in ligand-binding activity and selectivity []. ; GO: 0047134 protein-disulfide reductase activity, 0055114 oxidation-reduction process; PDB: 1V5N_A.
Probab=24.90 E-value=20 Score=26.64 Aligned_cols=27 Identities=22% Similarity=0.566 Sum_probs=11.7
Q ss_pred ceeccCCCCCCCCCCCCceeeCCCCCCcCCCCC
Q 002334 647 CLLCRGCDFSKSGFGPRTILLCDQCEREFHVGC 679 (935)
Q Consensus 647 C~iC~~~df~~sgf~~~tLL~CDqCdr~YHv~C 679 (935)
|..|+... .......|.+|+-..|..|
T Consensus 3 C~~C~~~~------~~~~~Y~C~~Cdf~lH~~C 29 (30)
T PF07649_consen 3 CDACGKPI------DGGWFYRCSECDFDLHEEC 29 (30)
T ss_dssp -TTTS----------S--EEE-TTT-----HHH
T ss_pred CCcCCCcC------CCCceEECccCCCccChhc
Confidence 77888652 2247899999999999887
No 202
>KOG1081 consensus Transcription factor NSD1 and related SET domain proteins [Transcription]
Probab=24.53 E-value=46 Score=39.90 Aligned_cols=46 Identities=24% Similarity=0.533 Sum_probs=37.9
Q ss_pred CCcccccccCccCCcCcccccCCCCceecccCCCcccccccCCCCCCCCCCcccccccc
Q 002334 542 GLGIICHCCNSEVSPSQFEAHADGGNLLPCDGCPRAFHKECASLSSIPQGDWYCKYCQN 600 (935)
Q Consensus 542 ~~~i~C~~C~~eiSpS~FE~hadgG~Ll~CD~Cp~afH~~CL~L~~vPeg~W~Cp~C~~ 600 (935)
.+...|.+|. ++|.+++|+.|..++|..|... ..|...|.|..|..
T Consensus 87 ~~~~~c~vc~------------~ggs~v~~~s~~~~~~r~c~~~-~~~~c~~~~~d~~~ 132 (463)
T KOG1081|consen 87 IEPSECFVCF------------KGGSLVTCKSRIQAPHRKCKPA-QLEKCSKRCTDCRA 132 (463)
T ss_pred CCcchhcccc------------CCCccceeccccccccccCcCc-cCcccccCCcceee
Confidence 3567899999 7999999999999999999964 56777788877763
No 203
>PF10262 Rdx: Rdx family; InterPro: IPR011893 This entry represents the Rdx family of selenoproteins, which includes mammalian selenoproteins SelW, SelV, SelT and SelH, bacterial SelW-like proteins and cysteine-containing proteins of unknown function in all three domains of life. Mammalian Rdx12 and its fish selenoprotein orthologues are also members of this family []. These proteins possess a thioredoxin-like fold and a conserved CXXC or CxxU (U is selenocysteine) motif near the N terminus, suggesting a redox function. Rdx proteins can use catalytic cysteine (or selenocysteine) to form transient mixed disulphides with substrate proteins. Selenium (Se) plays an essential role in cell survival and most of the effects of Se are probably mediated by selenoproteins. Selenoprotein W (SelW) plays an important role in protection of neurons from oxidative stress during neuronal development [], []. Selenoprotein T (SelT) is conserved from plants to humans. SelT is localized to the endoplasmic reticulum through a hydrophobic domain. The protein binds to UDP-glucose:glycoprotein glucosyltransferase (UGTR), the endoplasmic reticulum (ER)-resident protein, which is known to be involved in the quality control of protein folding [, ]. The function of SelT is unknown, although it may have a role in PACAP signaling during PC12 cell differentiation [, ]. Selenoprotein H (SelH) protects neurons against UVB-induced damage by inhibiting apoptotic cell death pathways, by preventing mitochondrial depolarization, and by promoting cell survival pathways [].; GO: 0008430 selenium binding, 0045454 cell redox homeostasis; PDB: 2OJL_B 2FA8_A 2P0G_C 2NPB_A 3DEX_C 2OKA_A 2OBK_G.
Probab=24.15 E-value=22 Score=31.87 Aligned_cols=27 Identities=37% Similarity=0.778 Sum_probs=21.0
Q ss_pred cceeEEeEEeeEEEEEEeccCCCCCCcc
Q 002334 41 CKRFKVTKVNGFIVYSRVKRSRFSNSDD 68 (935)
Q Consensus 41 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 68 (935)
=-.|.|+ |||-+|||++...+|-+.+.
T Consensus 42 ~G~FEV~-v~g~lI~SK~~~g~fP~~~~ 68 (76)
T PF10262_consen 42 TGAFEVT-VNGELIFSKLESGRFPDPDE 68 (76)
T ss_dssp TT-EEEE-ETTEEEEEHHHHTSSS-HHH
T ss_pred CCEEEEE-EccEEEEEehhcCCCCCHHH
Confidence 3469985 89999999999998887655
No 204
>PF05301 Mec-17: Touch receptor neuron protein Mec-17; InterPro: IPR007965 Mec-17 is the protein product of one of the 18 genes required for the development and function of the touch receptor neuron for gentle touch. Mec-17 is specifically required for maintaining the differentiation of the touch receptor []. This family is conserved to higher eukaryotes.; GO: 0019799 tubulin N-acetyltransferase activity
Probab=23.53 E-value=59 Score=32.34 Aligned_cols=49 Identities=12% Similarity=0.274 Sum_probs=31.2
Q ss_pred eecCccCCChhHHHHHHHHHHhhhcCccEEEecChh-hhHHHHHhccCcEE
Q 002334 835 TSKINHGKGYFQLLFACIEKLLSFLRVKSIVLPAAE-EAESIWTDKFGFKK 884 (935)
Q Consensus 835 T~~~yRgqG~gr~L~~~IE~~L~~lgV~~LvLpA~~-~a~~~w~~kfGF~~ 884 (935)
|.+..||+|+|+.|++.+.+. ..+....+.++--. -...|..+-+|-+.
T Consensus 54 Vhes~QR~G~Gk~LF~~ML~~-e~~~p~~~a~DrPS~Kll~Fl~Khy~L~~ 103 (120)
T PF05301_consen 54 VHESRQRRGYGKRLFDHMLQE-ENVSPHQLAIDRPSPKLLSFLKKHYGLQR 103 (120)
T ss_pred EEeceeccCchHHHHHHHHHH-cCCCcccceecCCcHHHHHHHHHhcCCCc
Confidence 789999999999999988766 22233344443322 24555555566553
No 205
>PF13771 zf-HC5HC2H: PHD-like zinc-binding domain
Probab=22.40 E-value=47 Score=30.13 Aligned_cols=32 Identities=38% Similarity=0.967 Sum_probs=25.3
Q ss_pred CCcccccccCccCCcCcccccCCCCceeccc--CCCcccccccCC
Q 002334 542 GLGIICHCCNSEVSPSQFEAHADGGNLLPCD--GCPRAFHKECAS 584 (935)
Q Consensus 542 ~~~i~C~~C~~eiSpS~FE~hadgG~Ll~CD--~Cp~afH~~CL~ 584 (935)
.....|..|.+ ..|-.+-|. +|...||..|.-
T Consensus 34 ~~~~~C~~C~~-----------~~Ga~i~C~~~~C~~~fH~~CA~ 67 (90)
T PF13771_consen 34 RRKLKCSICKK-----------KGGACIGCSHPGCSRSFHVPCAR 67 (90)
T ss_pred HhCCCCcCCCC-----------CCCeEEEEeCCCCCcEEChHHHc
Confidence 44568999995 337778886 699999999983
No 206
>PLN02195 cellulose synthase A
Probab=22.06 E-value=60 Score=42.10 Aligned_cols=56 Identities=25% Similarity=0.631 Sum_probs=44.4
Q ss_pred CCcccccccCccCCcCcccccCCCCceecccCCCcccccccCCCCCCCCCCccccccccccc
Q 002334 542 GLGIICHCCNSEVSPSQFEAHADGGNLLPCDGCPRAFHKECASLSSIPQGDWYCKYCQNMFE 603 (935)
Q Consensus 542 ~~~i~C~~C~~eiSpS~FE~hadgG~Ll~CD~Cp~afH~~CL~L~~vPeg~W~Cp~C~~~~~ 603 (935)
.++.+|.+|+..+... ++|.-.+-|..|.-..+..|+.- +..+|.=.||.|+..+.
T Consensus 4 ~~~~~c~~cgd~~~~~-----~~g~~fvaC~eC~~pvCrpCyey-er~eg~q~CpqCkt~Yk 59 (977)
T PLN02195 4 SGAPICATCGEEVGVD-----SNGEAFVACHECSYPLCKACLEY-EIKEGRKVCLRCGGPYD 59 (977)
T ss_pred CCCccceecccccCcC-----CCCCeEEEeccCCCccccchhhh-hhhcCCccCCccCCccc
Confidence 3567899999866543 36777799999998889999953 56788999999987765
No 207
>KOG3612 consensus PHD Zn-finger protein [General function prediction only]
Probab=22.06 E-value=55 Score=39.77 Aligned_cols=44 Identities=30% Similarity=0.419 Sum_probs=30.3
Q ss_pred cCcccccCCCCceecccCCCcccccccCCC-CCCCC--CCcccccccc
Q 002334 556 PSQFEAHADGGNLLPCDGCPRAFHKECASL-SSIPQ--GDWYCKYCQN 600 (935)
Q Consensus 556 pS~FE~hadgG~Ll~CD~Cp~afH~~CL~L-~~vPe--g~W~Cp~C~~ 600 (935)
++.||.|.+ |..+.|+.|-+.||..|+.. ...+. ..|.||.|..
T Consensus 61 ~~cfechlp-g~vl~c~vc~Rs~h~~c~sp~~q~r~~s~p~~~p~p~s 107 (588)
T KOG3612|consen 61 PFCFECHLP-GAVLKCIVCHRSFHENCQSPDPQKRNYSVPSDKPQPYS 107 (588)
T ss_pred cccccccCC-cceeeeehhhccccccccCcchhhccccccccCCcccc
Confidence 334444444 56778999999999999953 23332 4599998864
No 208
>KOG1642 consensus Ribonuclease, T2 family [RNA processing and modification]
Probab=21.57 E-value=43 Score=37.15 Aligned_cols=59 Identities=19% Similarity=0.221 Sum_probs=45.1
Q ss_pred eeeCcchhhhccccccC-Cc--ccceeccCCccHHH---HHHHhhcC---------CchhHHHHHHHHhcCCCc
Q 002334 273 RVIPPSKFEIHACKQYR-RA--SQYICFENGKSLLE---VLRACRSV---------PLPMLKATLQSALSSLPE 331 (935)
Q Consensus 273 ~v~s~s~FE~HAG~~~~-~p--~~~I~lenG~sL~~---v~~~~~~~---------~l~~l~~~i~~~~g~~~~ 331 (935)
.-+=.-+||.|.-++.- .| ++|=||+.+..|++ ++..|.++ +|+.++.||+.++|..|.
T Consensus 116 ~~fW~HEweKHGTCa~sv~~~~dq~~YF~~~L~l~~k~~l~~~L~~~gI~p~~~~y~l~~I~nAi~~~~G~~p~ 189 (263)
T KOG1642|consen 116 ESFWKHEWEKHGTCASSVFPLCDQHKYFETTLKLKQKLDLLSILKKAGIKPDDNFYSLADIKNAIKEAIGKTPG 189 (263)
T ss_pred chhhhhhhhccCchhhhhhhhhhHHHHHHHHHHHHHHHhHHHHHHHcCCCCCCCceeHHHHHHHHHHHhCCCCc
Confidence 34555688999877744 56 89999999998875 55665543 488899999999998864
No 209
>smart00184 RING Ring finger. E3 ubiquitin-protein ligase activity is intrinsic to the RING domain of c-Cbl and is likely to be a general function of this domain; Various RING fingers exhibit binding activity towards E2 ubiquitin-conjugating enzymes (Ubc' s)
Probab=21.53 E-value=18 Score=26.34 Aligned_cols=25 Identities=24% Similarity=0.628 Sum_probs=15.7
Q ss_pred cCCCcccccccCC-CCCCCCCCcccccc
Q 002334 572 DGCPRAFHKECAS-LSSIPQGDWYCKYC 598 (935)
Q Consensus 572 D~Cp~afH~~CL~-L~~vPeg~W~Cp~C 598 (935)
..|.+.||..|+. +.. .+...||.|
T Consensus 14 ~~C~H~~c~~C~~~~~~--~~~~~CP~C 39 (39)
T smart00184 14 LPCGHTFCRSCIRKWLK--SGNNTCPIC 39 (39)
T ss_pred ecCCChHHHHHHHHHHH--hCcCCCCCC
Confidence 3588999999985 111 234457665
No 210
>KOG0317 consensus Predicted E3 ubiquitin ligase, integral peroxisomal membrane protein [Posttranslational modification, protein turnover, chaperones]
Probab=21.30 E-value=28 Score=39.11 Aligned_cols=53 Identities=15% Similarity=0.258 Sum_probs=36.2
Q ss_pred cccCCcccccccCccCCcCcccccCCCCceecccCCCcccccccCCCCCCCCCCccccccccccccc
Q 002334 539 YKNGLGIICHCCNSEVSPSQFEAHADGGNLLPCDGCPRAFHKECASLSSIPQGDWYCKYCQNMFERK 605 (935)
Q Consensus 539 ~~~~~~i~C~~C~~eiSpS~FE~hadgG~Ll~CD~Cp~afH~~CL~L~~vPeg~W~Cp~C~~~~~~e 605 (935)
.+..+...|..|.+.. .-..|--|++-|.-.|+ .+|-...--||.|+..+++.
T Consensus 234 ~i~~a~~kC~LCLe~~------------~~pSaTpCGHiFCWsCI--~~w~~ek~eCPlCR~~~~ps 286 (293)
T KOG0317|consen 234 SIPEATRKCSLCLENR------------SNPSATPCGHIFCWSCI--LEWCSEKAECPLCREKFQPS 286 (293)
T ss_pred cCCCCCCceEEEecCC------------CCCCcCcCcchHHHHHH--HHHHccccCCCcccccCCCc
Confidence 3455667899999643 22357789999999998 34433333499999876653
No 211
>PF00130 C1_1: Phorbol esters/diacylglycerol binding domain (C1 domain); InterPro: IPR002219 Diacylglycerol (DAG) is an important second messenger. Phorbol esters (PE) are analogues of DAG and potent tumour promoters that cause a variety of physiological changes when administered to both cells and tissues. DAG activates a family of serine/threonine protein kinases, collectively known as protein kinase C (PKC) []. Phorbol esters can directly stimulate PKC. The N-terminal region of PKC, known as C1, has been shown [] to bind PE and DAG in a phospholipid and zinc-dependent fashion. The C1 region contains one or two copies (depending on the isozyme of PKC) of a cysteine-rich domain, which is about 50 amino-acid residues long, and which is essential for DAG/PE-binding. The DAG/PE-binding domain binds two zinc ions; the ligands of these metal ions are probably the six cysteines and two histidines that are conserved in this domain.; GO: 0035556 intracellular signal transduction; PDB: 1RFH_A 2FNF_X 3PFQ_A 1PTQ_A 1PTR_A 2VRW_B 1XA6_A 2ENN_A 1TBN_A 1TBO_A ....
Probab=21.14 E-value=96 Score=25.42 Aligned_cols=35 Identities=26% Similarity=0.458 Sum_probs=26.5
Q ss_pred CcccccccCccCCcCcccccCCCCceecccCCCcccccccCC
Q 002334 543 LGIICHCCNSEVSPSQFEAHADGGNLLPCDGCPRAFHKECAS 584 (935)
Q Consensus 543 ~~i~C~~C~~eiSpS~FE~hadgG~Ll~CD~Cp~afH~~CL~ 584 (935)
....|..|++.+.. .+..-+.|..|....|..|+.
T Consensus 10 ~~~~C~~C~~~i~g-------~~~~g~~C~~C~~~~H~~C~~ 44 (53)
T PF00130_consen 10 KPTYCDVCGKFIWG-------LGKQGYRCSWCGLVCHKKCLS 44 (53)
T ss_dssp STEB-TTSSSBECS-------SSSCEEEETTTT-EEETTGGC
T ss_pred CCCCCcccCcccCC-------CCCCeEEECCCCChHhhhhhh
Confidence 45689999987632 356789999999999999995
No 212
>PF14545 DBB: Dof, BCAP, and BANK (DBB) motif,
Probab=21.04 E-value=3.2e+02 Score=28.06 Aligned_cols=63 Identities=19% Similarity=0.245 Sum_probs=47.6
Q ss_pred cceEEEEEeeCCeEEEEEEEEEeCCeeEEEeeeEeecCccCCChhHHHHHHHHHHhhhcCccEEEecChhhhHHHHHhcc
Q 002334 801 GGMYCAILTVNSSVVSAGILRVFGQEVAELPLVATSKINHGKGYFQLLFACIEKLLSFLRVKSIVLPAAEEAESIWTDKF 880 (935)
Q Consensus 801 ~GfY~~VL~~~~~vVsaA~lrv~g~~vAElplVAT~~~yRgqG~gr~L~~~IE~~L~~lgV~~LvLpA~~~a~~~w~~kf 880 (935)
.|++.+-++.||.++|++.|-.+.+ |.+||++|+. |+...+-+=+. |
T Consensus 65 ag~V~v~v~~~g~~~~~~~ikyys~-----------------------~~el~~lL~~---------~~~PvefmCQa-~ 111 (142)
T PF14545_consen 65 AGSVNVRVYCDGVSLGTRQIKYYSR-----------------------MRELEQLLRK---------AANPVEFMCQA-F 111 (142)
T ss_pred CceEEEEEEECCEEEEEEeEEEEec-----------------------HHHHHHHHHh---------cCChhhhhhhh-c
Confidence 7889999999999999999988764 5678888876 23333444455 9
Q ss_pred CcEEcCHHHHHHHHhh
Q 002334 881 GFKKIDPELLSIYRKR 896 (935)
Q Consensus 881 GF~~i~~~el~~~~~~ 896 (935)
|+.+.+.++|..+...
T Consensus 112 ~i~p~~~E~LD~~Lt~ 127 (142)
T PF14545_consen 112 GISPNDREELDNLLTE 127 (142)
T ss_pred CCCCCCHHHHHHHHHH
Confidence 9999898888776543
No 213
>KOG4628 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=20.98 E-value=51 Score=38.20 Aligned_cols=46 Identities=28% Similarity=0.665 Sum_probs=30.6
Q ss_pred CcceeccCCCCCCCCCCCCceeeCCCCCCcCCCCCCCCCcCCccCCCCCCCceecCCccc
Q 002334 645 SGCLLCRGCDFSKSGFGPRTILLCDQCEREFHVGCLKKHKMADLRELPKGKWFCCMDCSR 704 (935)
Q Consensus 645 ~~C~iC~~~df~~sgf~~~tLL~CDqCdr~YHv~CL~p~~~~~L~evP~g~WfCc~~C~~ 704 (935)
..|++|-+. +..+..+.==-|...||..|.++. |.. -.=+| +.|+.
T Consensus 230 ~~CaIClEd------Y~~GdklRiLPC~H~FH~~CIDpW----L~~---~r~~C-PvCK~ 275 (348)
T KOG4628|consen 230 DTCAICLED------YEKGDKLRILPCSHKFHVNCIDPW----LTQ---TRTFC-PVCKR 275 (348)
T ss_pred ceEEEeecc------cccCCeeeEecCCCchhhccchhh----Hhh---cCccC-CCCCC
Confidence 379999874 233444433578999999999873 211 12378 89975
No 214
>PF07943 PBP5_C: Penicillin-binding protein 5, C-terminal domain; InterPro: IPR012907 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry contains proteins that are annotated as penicillin-binding protein 5 and 6. These belong to MEROPS peptidase family S11 (D-Ala-D-Ala carboxypeptidase A family, clan SE). Penicillin-binding protein 5 expressed by Escherichia coli functions as a D-alanyl-D-alanine carboxypeptidase. It is composed of two domains that are oriented at approximately right angles to each other. The N-terminal domain (IPR001967 from INTERPRO) is the catalytic domain. The C-terminal domain, this entry, is organised into a sandwich of two anti-parallel beta-sheets, and has a relatively hydrophobic surface as compared to the N-terminal domain. Its precise function is unknown; it may mediate interactions with other cell wall-synthesising enzymes, thus allowing the protein to be recruited to areas of active cell wall synthesis. It may also function as a linker domain that positions the active site in the catalytic domain closer to the peptidoglycan layer, to allow it to interact with cell wall peptides []. ; GO: 0009002 serine-type D-Ala-D-Ala carboxypeptidase activity, 0006508 proteolysis; PDB: 3A3J_A 3MFD_B 1XP4_D 3MZD_A 1NZU_A 1NJ4_A 1Z6F_A 3MZF_A 1NZO_A 3MZE_A ....
Probab=20.49 E-value=1.2e+02 Score=27.29 Aligned_cols=27 Identities=30% Similarity=0.438 Sum_probs=23.4
Q ss_pred CCeEEEEEEEEEeCCeeEEEeeeEeec
Q 002334 811 NSSVVSAGILRVFGQEVAELPLVATSK 837 (935)
Q Consensus 811 ~~~vVsaA~lrv~g~~vAElplVAT~~ 837 (935)
-|+.||.+.+..-|..++++|++|...
T Consensus 62 kG~~vG~~~v~~~~~~i~~vpL~a~~~ 88 (91)
T PF07943_consen 62 KGQVVGTLTVYLDGKLIGEVPLVASED 88 (91)
T ss_dssp TTSEEEEEEEEETTEEEEEEEEEESS-
T ss_pred CCCEEEEEEEEECCEEEEEEEEEECCc
Confidence 389999999988888999999999754
No 215
>COG5243 HRD1 HRD ubiquitin ligase complex, ER membrane component [Posttranslational modification, protein turnover, chaperones]
Probab=20.25 E-value=31 Score=40.09 Aligned_cols=57 Identities=21% Similarity=0.452 Sum_probs=34.3
Q ss_pred CCcccccccCcc-CCcCcccccCCCCceec-ccCCCcccccccCCCCCCCCCCccccccccc
Q 002334 542 GLGIICHCCNSE-VSPSQFEAHADGGNLLP-CDGCPRAFHKECASLSSIPQGDWYCKYCQNM 601 (935)
Q Consensus 542 ~~~i~C~~C~~e-iSpS~FE~hadgG~Ll~-CD~Cp~afH~~CL~L~~vPeg~W~Cp~C~~~ 601 (935)
.++-.|.+|..+ +++.+ |..-.+-++-. =--|++.+|+.|| +.|-+..--||.|+..
T Consensus 285 n~D~~C~ICmde~~h~~~-~~~~~~~~~~pKrLpCGHilHl~CL--knW~ERqQTCPICr~p 343 (491)
T COG5243 285 NSDRTCTICMDEMFHPDH-EPLPRGLDMTPKRLPCGHILHLHCL--KNWLERQQTCPICRRP 343 (491)
T ss_pred CCCCeEEEecccccCCCC-ccCcccccCCcccccccceeeHHHH--HHHHHhccCCCcccCc
Confidence 445689999977 44321 11111111111 1147889999999 5566666789999976
No 216
>TIGR03827 GNAT_ablB putative beta-lysine N-acetyltransferase. Members of this protein family are GNAT family acetyltransferases, based on a seed alignment in which every member is associated with a lysine 2,3-aminomutase family protein, usually as the adjacent gene. This family includes AblB, the enzyme beta-lysine acetyltransferase that completes the two-step synthesis of the osmolyte (compatible solute) N-epsilon-acetyl-beta-lysine; all members of the family may have this function. Note that N-epsilon-acetyl-beta-lysine has been observed only in methanogenic archaea (e.g. Methanosarcina) but that this model, paired with TIGR03820, suggests a much broader distribution.
Probab=20.02 E-value=1.5e+02 Score=32.43 Aligned_cols=43 Identities=9% Similarity=0.159 Sum_probs=39.7
Q ss_pred ChhHHHHHHHHHHhhhcCccEEEecChhhhHHHHHhccCcEEcC
Q 002334 843 GYFQLLFACIEKLLSFLRVKSIVLPAAEEAESIWTDKFGFKKID 886 (935)
Q Consensus 843 G~gr~L~~~IE~~L~~lgV~~LvLpA~~~a~~~w~~kfGF~~i~ 886 (935)
|-...|+..++++++..|..+|++.+..++.+.|.+ .||...+
T Consensus 21 ~~~~~~~~~~~~~a~~~~~~ki~~~~~~~~~~~~~~-~g~~~e~ 63 (266)
T TIGR03827 21 NDVEALIPDLDALAKKEGYTKIIAKVPGSDKPLFEE-RGYLEEA 63 (266)
T ss_pred ccHHHHHHHHHHHHHHcCCcEEEEEccHHHHHHHHH-CCCeEEE
Confidence 447899999999999999999999999999999999 9999873
Done!