Your job contains 1 sequence.
>002335
MADSPASPATIDPNFKQPESNNPNRKPDTPSTSISQPEQQQQQHPSIINPNPSPNPNQTP
APASLPPAPVQSFVPPTQPISYRPVPMSTASQFSPVQNYQSPVVQPPGVGGVAVTMAPPM
MQYPGVPGQPPNPALRPYAPIPNGYGAVPAPASGLPRYPAPYPSMVRPAFPPRPPGPVGV
LPSVARPPVPGIPGVRPIMPPVVRPVPLPTVTPAEKPQTKVYVGKIAPTADSDFVLSVLK
VCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVDQATRE
YLERYVDKKTENTKKLKETQDAGAGKEDESVQSVEKNEPTKSPENLKDNETGNKESHDPT
NFGVVTEEDRKADQEALEKLTCMVEERLKTNPLPPPPPQTTADGSGISNSELPAKARDGD
SDVDMIRNDIAEDKLDDETTSDTKASDHDRPETSSPDRSRVHDRRGRDKERDLKREKERE
IDRYEREAERERVRKEREQRRKIEEAEREYERCLKDWEYREREREKERQYEKEKEKERER
KRKKEILYDEEEDEDDSRKRWRRSVLEEKRRKRIREKEEDLADEVREEEEIAVAKRRAEE
EQLQQQQRDALKLLSDNAVNGSLAEESAVESKGMDVEHDYHDDSIRENHMAGDPSSQNGN
GDESTNVPIAASDMRQSGNVPARKLGFGLVGSGKRTAVPSVFHVEDDDDADKDKKMRPLV
PIDYSTEELQAAQPHVSGANPPNLAAAAEFAKRISNVNSKEEKSDAERERSRRLHDRSSQ
REKDRSDEDNNRTRDEHKEKILDRDRDREHGLDKVKTPDNKKLLDAKQLIDMIPKTKEEL
FSYEINWAVYDKHELHERMRPWISKKITEFLGEEETTLVDYIVSSTQDHVKASQMLELLQ
TILDDEAEMFVLKMWRMLIFEIKKVETGLALRSKS
The BLAST search returned 1 gene product which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 002335
(935 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2195568 - symbol:AT1G60200 species:3702 "Arabi... 837 2.7e-155 5
MGI|MGI:1914289 - symbol:Rbm25 "RNA binding motif protein... 288 3.2e-40 5
UNIPROTKB|E1BHM5 - symbol:RBM25 "Uncharacterized protein"... 288 8.3e-40 5
UNIPROTKB|P49756 - symbol:RBM25 "RNA-binding protein 25" ... 288 8.3e-40 5
UNIPROTKB|E1BSR5 - symbol:RBM25 "Uncharacterized protein"... 295 1.0e-37 4
ZFIN|ZDB-GENE-030131-5547 - symbol:rbm25 "RNA binding mot... 278 2.5e-35 4
WB|WBGene00012245 - symbol:W04D2.6 species:6239 "Caenorha... 258 4.0e-35 2
FB|FBgn0028474 - symbol:CG4119 species:7227 "Drosophila m... 264 3.6e-31 4
RGD|1308755 - symbol:Rbm25 "RNA binding motif protein 25"... 288 7.8e-29 3
DICTYBASE|DDB_G0269926 - symbol:DDB_G0269926 "splicing fa... 201 2.4e-27 3
GENEDB_PFALCIPARUM|PFF0505c - symbol:PFF0505c "hypothetic... 203 2.9e-22 2
UNIPROTKB|C6KSU9 - symbol:PFF0505c "Putative uncharacteri... 203 2.9e-22 2
UNIPROTKB|I3LLA0 - symbol:RBM25 "Uncharacterized protein"... 180 2.7e-20 3
ASPGD|ASPL0000002523 - symbol:AN6036 species:162425 "Emer... 203 1.0e-19 5
UNIPROTKB|E9PQU5 - symbol:RBM25 "RNA-binding protein 25" ... 180 2.1e-16 2
RGD|1565486 - symbol:RGD1565486 "similar to RNA binding m... 180 2.9e-15 4
UNIPROTKB|E2RQR0 - symbol:RBM25 "Uncharacterized protein"... 180 8.2e-13 1
POMBASE|SPBC839.10 - symbol:usp107 "U1 snRNP-associated p... 148 2.9e-12 3
UNIPROTKB|Q66II8 - symbol:snrnp70 "U1 small nuclear ribon... 110 6.2e-08 3
DICTYBASE|DDB_G0294559 - symbol:DDB_G0294559 "RNA-binding... 92 6.0e-06 2
POMBASE|SPAC644.16 - symbol:SPAC644.16 "RNA-binding prote... 135 1.3e-05 1
MGI|MGI:2145245 - symbol:Srek1 "splicing regulatory gluta... 118 1.5e-05 2
ZFIN|ZDB-GENE-030131-5277 - symbol:cpsf6 "cleavage and po... 102 2.3e-05 2
DICTYBASE|DDB_G0287951 - symbol:DDB_G0287951 "unknown" sp... 120 2.3e-05 2
GENEDB_PFALCIPARUM|MAL13P1.120 - symbol:MAL13P1.120 "spli... 122 2.5e-05 3
UNIPROTKB|Q8IE99 - symbol:MAL13P1.120 "Splicing factor, p... 122 2.5e-05 3
RGD|621696 - symbol:Srek1 "splicing regulatory glutamine/... 115 3.1e-05 2
UNIPROTKB|Q9JKL7 - symbol:Srek1 "Splicing regulatory glut... 115 3.1e-05 2
UNIPROTKB|B4DH15 - symbol:DDX23 "cDNA FLJ54028, highly si... 86 3.8e-05 2
FB|FBgn0027841 - symbol:CstF-64 "Cleavage stimulation fac... 131 3.8e-05 1
GENEDB_PFALCIPARUM|PFB0680w - symbol:PFB0680w "hypothetic... 110 4.1e-05 2
UNIPROTKB|O96229 - symbol:RON6 "Rhoptry neck protein 6" s... 110 4.1e-05 2
UNIPROTKB|J9P250 - symbol:RBMX2 "Uncharacterized protein"... 94 4.5e-05 2
WB|WBGene00000774 - symbol:cpf-2 species:6239 "Caenorhabd... 125 6.2e-05 2
UNIPROTKB|P09406 - symbol:snrnp70 "U1 small nuclear ribon... 115 6.9e-05 2
UNIPROTKB|K7GQZ8 - symbol:LOC100515986 "Uncharacterized p... 106 7.0e-05 1
UNIPROTKB|D6RFF0 - symbol:LARP7 "La-related protein 7" sp... 105 9.7e-05 2
MGI|MGI:1919709 - symbol:Htatsf1 "HIV TAT specific factor... 77 0.00011 3
DICTYBASE|DDB_G0291444 - symbol:DDB_G0291444 species:4468... 89 0.00013 2
WB|WBGene00000890 - symbol:sig-7 species:6239 "Caenorhabd... 111 0.00014 2
WB|WBGene00018926 - symbol:F56A11.6 species:6239 "Caenorh... 101 0.00019 2
DICTYBASE|DDB_G0269732 - symbol:DDB_G0269732 "DnaJ homolo... 101 0.00021 3
ASPGD|ASPL0000005213 - symbol:AN6074 species:162425 "Emer... 119 0.00021 2
MGI|MGI:102744 - symbol:Nelfe "negative elongation factor... 123 0.00022 1
UNIPROTKB|G3FP13 - symbol:PQBP1 "Polyglutamine binding pr... 120 0.00023 1
DICTYBASE|DDB_G0282873 - symbol:DDB_G0282873 "RNA-binding... 104 0.00023 3
ZFIN|ZDB-GENE-030131-6251 - symbol:ppil4 "peptidylprolyl ... 101 0.00031 2
TAIR|locus:2058141 - symbol:AT2G43370 species:3702 "Arabi... 101 0.00031 2
UNIPROTKB|Q4G0J3 - symbol:LARP7 "La-related protein 7" sp... 105 0.00035 2
UNIPROTKB|G4NGT8 - symbol:MGG_17707 "Uncharacterized prot... 120 0.00035 2
ZFIN|ZDB-GENE-030131-2891 - symbol:puf60a "poly-U binding... 125 0.00036 2
UNIPROTKB|Q2HJC9 - symbol:PQBP1 "Polyglutamine-binding pr... 118 0.00037 1
ZFIN|ZDB-GENE-040625-116 - symbol:puf60b "poly-U binding ... 131 0.00038 2
UNIPROTKB|E2RHX2 - symbol:PQBP1 "Uncharacterized protein"... 118 0.00038 1
UNIPROTKB|Q6DDW4 - symbol:cpsf6 "Cleavage and polyadenyla... 92 0.00044 2
DICTYBASE|DDB_G0281261 - symbol:DDB_G0281261 "putative G-... 116 0.00046 2
UNIPROTKB|Q8WXA9 - symbol:SREK1 "Splicing regulatory glut... 122 0.00046 1
TAIR|locus:504955937 - symbol:AT2G22795 "AT2G22795" speci... 81 0.00047 3
MGI|MGI:1859638 - symbol:Pqbp1 "polyglutamine binding pro... 117 0.00048 1
UNIPROTKB|F1LP40 - symbol:Rdbp "Protein Rdbp" species:101... 119 0.00052 1
RGD|1303325 - symbol:Nelfe "negative elongation factor co... 119 0.00059 1
DICTYBASE|DDB_G0276577 - symbol:fray2 "FRAY subfamily pro... 120 0.00059 2
DICTYBASE|DDB_G0271832 - symbol:DDB_G0271832 "Zinc finger... 122 0.00060 2
UNIPROTKB|E9PD43 - symbol:NELFE "Protein NELFE" species:9... 116 0.00061 1
UNIPROTKB|F8WJN3 - symbol:CPSF6 "Cleavage and polyadenyla... 100 0.00072 2
UNIPROTKB|C9JQA1 - symbol:PQBP1 "Polyglutamine-binding pr... 113 0.00073 1
UNIPROTKB|E9PQ56 - symbol:PUF60 "Poly(U)-binding-splicing... 117 0.00076 1
UNIPROTKB|E2R1C1 - symbol:CSTF2T "Uncharacterized protein... 119 0.00077 1
UNIPROTKB|F1PRG0 - symbol:RBMX2 "Uncharacterized protein"... 82 0.00081 2
UNIPROTKB|A2ABK2 - symbol:NELFE "Protein NELFE" species:9... 116 0.00081 1
UNIPROTKB|H0YEM1 - symbol:PUF60 "Poly(U)-binding-splicing... 117 0.00082 1
UNIPROTKB|F1NA97 - symbol:LOC426301 "Uncharacterized prot... 117 0.00096 1
UNIPROTKB|K7GQ47 - symbol:RDBP "Uncharacterized protein" ... 117 0.00099 1
>TAIR|locus:2195568 [details] [associations]
symbol:AT1G60200 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA;ISS] [GO:0005886 "plasma membrane"
evidence=ISM] [GO:0006397 "mRNA processing" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002483 InterPro:IPR012677
Pfam:PF00076 Pfam:PF01480 PROSITE:PS50102 PROSITE:PS51025
SMART:SM00311 SMART:SM00360 EMBL:CP002684 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003676 Gene3D:1.20.1390.10
KO:K12822 SUPFAM:SSF101233 OMA:VENDFMM EMBL:AY074284 EMBL:BT001972
IPI:IPI00528280 RefSeq:NP_176226.3 UniGene:At.25089
ProteinModelPortal:Q8VY15 SMR:Q8VY15 PRIDE:Q8VY15
EnsemblPlants:AT1G60200.1 GeneID:842315 KEGG:ath:AT1G60200
TAIR:At1g60200 HOGENOM:HOG000084588 InParanoid:Q8VY15
PhylomeDB:Q8VY15 ProtClustDB:CLSN2918507 ArrayExpress:Q8VY15
Genevestigator:Q8VY15 Uniprot:Q8VY15
Length = 899
Score = 837 (299.7 bits), Expect = 2.7e-155, Sum P(5) = 2.7e-155
Identities = 175/296 (59%), Positives = 216/296 (72%)
Query: 643 DSIRENHMAGDPSSQNGNGDESTNVPIAASDMRQSGNVPARKLGFGLVGSGKRTAVPSVF 702
+S E+H A D +NG+G+ES + ++ + P++KLGFGLVGSGKRT+VPSVF
Sbjct: 612 ESANEHH-AAD-FEENGSGNESMAID---NNSGSEAHAPSKKLGFGLVGSGKRTSVPSVF 666
Query: 703 HVEXXXXXXXXXXMRPLVPIDYSTEELQAAQPHVSGANPPNLAAAAEFAKRISNVNSKEE 762
+ E M+PLVPIDYSTEE +A SG PP+LA AAEFAKRIS+ N KEE
Sbjct: 667 YEEDEDEARKAKKMKPLVPIDYSTEEQEAVAHGGSGNTPPHLALAAEFAKRISSTNPKEE 726
Query: 763 KSDAERERSRRLHDRSSQREKDRS---DEDNNRTRDEHKEKILDRDRDREHGLDKVKTPD 819
+ E++RSRR HD++S R+++R D D +R RD +E G K K D
Sbjct: 727 TIETEKQRSRRSHDKASHRDRERERERDRDRDRVRDRGDGHSGPTKDAKESG--KAKIID 784
Query: 820 NKKLLDAKQLIDMIPKTKEELFSYEINWAVYDKHELHERMRPWISKKITEFLGEEETTLV 879
K LDAKQLID IPKTKE+LFSYEINWA+YDKH++HERMRPWISKKI EFLGEEE TLV
Sbjct: 785 TK-FLDAKQLIDTIPKTKEDLFSYEINWAMYDKHQVHERMRPWISKKIMEFLGEEEATLV 843
Query: 880 DYIVSSTQDHVKASQMLELLQTILDDEAEMFVLKMWRMLIFEIKKVETGLALRSKS 935
D+IVS+TQ HV+ASQMLELLQ+ILD+EAEMFVLKMWRMLIFEIK+VE G+ ++SK+
Sbjct: 844 DFIVSNTQQHVQASQMLELLQSILDEEAEMFVLKMWRMLIFEIKRVEAGVPVKSKA 899
Score = 493 (178.6 bits), Expect = 2.7e-155, Sum P(5) = 2.7e-155
Identities = 113/249 (45%), Positives = 162/249 (65%)
Query: 214 AEKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGV 273
AEKPQT +Y+GKIA T ++DF++S+L+ CG VKS RA+ P+ PKGFGF EFESAEG+
Sbjct: 199 AEKPQTTIYIGKIA-TVENDFMMSILEFCGHVKSCLRAEDPTTKKPKGFGFYEFESAEGI 257
Query: 274 LRALRLLNKFNIDGQELMLKVDQATREYLERYVDXXXXXXXXXXXXQDAGAGKEDESVQS 333
LRA+RLL + IDGQEL++ V+QAT+EYL +YV+ Q KE+++
Sbjct: 258 LRAIRLLTQRTIDGQELLVNVNQATKEYLLKYVEKKIETAKKAKESQGT---KENQAEGP 314
Query: 334 VEKNEPTKSPENL--KDNETGNKESHDPTNFGVVTEEDRKADQEALEKLTCMVEERLKTN 391
+ + +S +N KD E+ KE+ D N V+T+E+R+AD+EA+EK+ +EERLK+N
Sbjct: 315 ESEQDKLESADNETGKDGESKIKENIDIANSAVLTDEEREADREAMEKIETAIEERLKSN 374
Query: 392 XXXXXXXQTTADGSGISNSELPAKARDGDSDVDMIRNDIAEDKLDDETTSDTKASDHDRP 451
ADGSG+ E K++DGDS+ D+ R+D A + D ET+ + H+RP
Sbjct: 375 PLPPPP-PPPADGSGM---EFAFKSKDGDSNTDVARSDAAAN--DVETSGE-----HNRP 423
Query: 452 ETSSPDRSR 460
+TSSPD S+
Sbjct: 424 DTSSPDWSK 432
Score = 130 (50.8 bits), Expect = 2.7e-155, Sum P(5) = 2.7e-155
Identities = 39/111 (35%), Positives = 49/111 (44%)
Query: 60 PAPASLPPAPVQSFVPPTQPISYRPVPMSTASQFSPVQNYQSXXXXXXXXXXXXXTMAPP 119
P P PPA + S + PT P P QF+PV N+Q+ PP
Sbjct: 54 PGPPYAPPAQIPSSLLPTNLPP--PPPFRPGMQFTPVANFQNPSSG-----------VPP 100
Query: 120 MMQYPG-VPGQPPNPALRPYAPIPNGY----GAVPA---PASGLPRYPAPY 162
PG +P P P +RP+ P+ NGY G P P GL RYP+PY
Sbjct: 101 ----PGSMPQYQPQPGMRPFQPMANGYPGIHGVAPPGAMPPHGLLRYPSPY 147
Score = 79 (32.9 bits), Expect = 6.1e-65, Sum P(4) = 6.1e-65
Identities = 44/196 (22%), Positives = 87/196 (44%)
Query: 723 DYSTEELQAAQPHVSGA-NPPNLAAAAEFAKRISNVNSKEEKSDAERERSRRLHDRSSQR 781
D + + A SG N P+ ++ +++KR N E+ + E+E R ++R ++R
Sbjct: 403 DVARSDAAANDVETSGEHNRPD-TSSPDWSKR--NDRRSRERGEKEQEMDR--YEREAER 457
Query: 782 EKDRSDEDNNRTRDE----HKEKILD---RDRDREHGLDKVKTPDNKKLLDAKQLIDMIP 834
E+ R + + R ++ ++ ++ R+R++E K + +K K+ I
Sbjct: 458 ERSRKEREQRRKLEDAERAYQTRLRQWERREREKEKERQYEKEKEKEKERKRKKEIRYEE 517
Query: 835 KTKEELFSYEINWAVYDKHELHERMRPWISKK---ITEFLGEEETTLVDYIVSSTQDHVK 891
+ +E+ W + L ER R + +K + + L EEE V S ++
Sbjct: 518 EEEEDDDDSRRRW---HRAALDERRRRQLREKEDDLADRLKEEEE--VAEAKRSAEEQNL 572
Query: 892 ASQMLELLQTILDDEA 907
Q L+ L+ IL +A
Sbjct: 573 QQQQLDALR-ILSGQA 587
Score = 74 (31.1 bits), Expect = 2.7e-155, Sum P(5) = 2.7e-155
Identities = 15/28 (53%), Positives = 19/28 (67%)
Query: 1 MADSPASPATIDPNFKQPESNNPNRKPD 28
MAD +SPAT DPN ++PES P P+
Sbjct: 1 MADESSSPATGDPNSQKPESTTPISIPN 28
Score = 49 (22.3 bits), Expect = 8.4e-147, Sum P(5) = 8.4e-147
Identities = 13/31 (41%), Positives = 14/31 (45%)
Query: 115 TMAPPMM--QYPGVPGQPPNPALRPYAPIPN 143
T PP Q P P PP P P A IP+
Sbjct: 36 TPPPPQQHSQPPVAPLVPPGPPYAPPAQIPS 66
Score = 47 (21.6 bits), Expect = 1.4e-146, Sum P(5) = 1.4e-146
Identities = 14/37 (37%), Positives = 18/37 (48%)
Query: 126 VPGQPPNPALRPYAPIPNGYGAVPAPASGLPRYPAPY 162
+P PNP+L P P P + P A +P P PY
Sbjct: 26 IPNPNPNPSLTP--PPPQQHSQPPV-APLVPPGP-PY 58
Score = 47 (21.6 bits), Expect = 1.7e-07, Sum P(3) = 1.7e-07
Identities = 43/204 (21%), Positives = 66/204 (32%)
Query: 271 EGVLRALRLLNKFNIDGQEL-MLKVDQATREYLERYVDXXXXXXXXXXXXQDAGAGKEDE 329
E V A R + N+ Q+L L++ V Q G +
Sbjct: 558 EEVAEAKRSAEEQNLQQQQLDALRILSGQAAIGSETVQTSPIENDHKATLQTVGESANEH 617
Query: 330 SVQSVEKNEPTKSPENLKDNETGNKESHDPTN---FGVVTEEDRKA--------DQEALE 378
E+N + DN +G+ E+H P+ FG+V R + D++
Sbjct: 618 HAADFEENGSGNESMAI-DNNSGS-EAHAPSKKLGFGLVGSGKRTSVPSVFYEEDEDEAR 675
Query: 379 KLTCMVEERLKTNXXXXXXXQTTADGSGISNSELPAKARDGD--SDVDMIRNDIAEDKLD 436
K M + + + GSG + L A S + I +K
Sbjct: 676 KAKKM-KPLVPIDYSTEEQEAVAHGGSGNTPPHLALAAEFAKRISSTNPKEETIETEKQR 734
Query: 437 DETTSDTKASDHDRPETSSPDRSR 460
+ D KAS DR DR R
Sbjct: 735 SRRSHD-KASHRDRERERERDRDR 757
Score = 37 (18.1 bits), Expect = 2.7e-155, Sum P(5) = 2.7e-155
Identities = 6/10 (60%), Positives = 8/10 (80%)
Query: 557 SRKRWRRSVL 566
SR+RW R+ L
Sbjct: 526 SRRRWHRAAL 535
Score = 37 (18.1 bits), Expect = 1.7e-06, Sum P(3) = 1.7e-06
Identities = 10/56 (17%), Positives = 23/56 (41%)
Query: 746 AAAEFAKRISNVNSKEEKSDAERERSRRLHDRSSQREKDRSDEDNNRTRDEHKEKI 801
A E+ + + K E + ++ + E+D+ + +N T + + KI
Sbjct: 281 ATKEYLLKYVEKKIETAKKAKESQGTKENQAEGPESEQDKLESADNETGKDGESKI 336
>MGI|MGI:1914289 [details] [associations]
symbol:Rbm25 "RNA binding motif protein 25" species:10090
"Mus musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0000381 "regulation of alternative mRNA splicing, via
spliceosome" evidence=ISO] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0003729
"mRNA binding" evidence=ISO] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0006915 "apoptotic process" evidence=ISO]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0016607 "nuclear
speck" evidence=ISO] InterPro:IPR000504 InterPro:IPR002483
InterPro:IPR012677 Pfam:PF00076 Pfam:PF01480 PROSITE:PS50102
PROSITE:PS51025 SMART:SM00311 SMART:SM00360 MGI:MGI:1914289
GO:GO:0005737 GO:GO:0006915 GO:GO:0008380 GO:GO:0000166
GO:GO:0016607 GO:GO:0003729 GO:GO:0006397 Gene3D:3.30.70.330
Gene3D:1.20.1390.10 GO:GO:0000381 CTD:58517 eggNOG:NOG250187
KO:K12822 OMA:EDINAME OrthoDB:EOG498V0R SUPFAM:SSF101233
EMBL:AK011184 EMBL:AK011403 EMBL:AK076553 EMBL:AK142132
EMBL:AK151910 EMBL:AK164367 EMBL:BC158104 EMBL:BC010792
EMBL:BC066150 EMBL:BC067400 IPI:IPI00421119 IPI:IPI00662049
IPI:IPI00928541 RefSeq:NP_081625.3 UniGene:Mm.46005
ProteinModelPortal:B2RY56 SMR:B2RY56 IntAct:B2RY56 STRING:B2RY56
PhosphoSite:B2RY56 PaxDb:B2RY56 PRIDE:B2RY56
Ensembl:ENSMUST00000048155 GeneID:67039 KEGG:mmu:67039
UCSC:uc007odj.1 UCSC:uc007odl.1 GeneTree:ENSGT00700000104356
InParanoid:Q8BVT8 NextBio:323382 Bgee:B2RY56 Genevestigator:B2RY56
Uniprot:B2RY56
Length = 838
Score = 288 (106.4 bits), Expect = 3.2e-40, Sum P(5) = 3.2e-40
Identities = 57/144 (39%), Positives = 90/144 (62%)
Query: 787 DEDNNRTRDEHKEKILDRDRDREHGLD-KVKTPDNKKLLDAKQLIDMIPKTKEELFSYEI 845
DED++ + K LD D ++ V T + +K + K LI+ IP K ELF+Y +
Sbjct: 695 DEDSDDVPRKRKLVPLDYGEDDKNATKGTVNTEEKRKHI--KSLIEKIPTAKPELFAYPL 752
Query: 846 NWAVYDKHELHERMRPWISKKITEFLGEEETTLVDYIVSSTQDHVKASQMLELLQTILDD 905
+W++ D + R+RPWI+KKI E++GEEE TLVD++ S H +L+ + +LD+
Sbjct: 753 DWSIVDSILMERRIRPWINKKIIEYIGEEEATLVDFVCSKVMAHSSPQSILDDVAMVLDE 812
Query: 906 EAEMFVLKMWRMLIFEIKKVETGL 929
EAE+F++KMWR+LI+E + + GL
Sbjct: 813 EAEVFIVKMWRLLIYETEAKKIGL 836
Score = 180 (68.4 bits), Expect = 3.2e-40, Sum P(5) = 3.2e-40
Identities = 38/89 (42%), Positives = 53/89 (59%)
Query: 217 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRA 276
P T V+VG I+ A + +L CG V SWKR Q S G + FGFCE++ E LRA
Sbjct: 85 PTTTVFVGNISEKASDMLIRQLLAKCGLVLSWKRVQGAS-GKLQAFGFCEYKEPESTLRA 143
Query: 277 LRLLNKFNIDGQELMLKVDQATREYLERY 305
LRLL+ I ++L++KVD T+ L+ +
Sbjct: 144 LRLLHDLQIGEKKLLVKVDAKTKAQLDEW 172
Score = 124 (48.7 bits), Expect = 4.5e-19, Sum P(4) = 4.5e-19
Identities = 28/108 (25%), Positives = 55/108 (50%)
Query: 718 PLVPIDYST-EELQAAQPHVSGAN--PPNLAAAAEFAKRISNVNSKEEKSDAERERSRRL 774
PL+P T E++ A + + ++ + K++ K+EK E E+ RR
Sbjct: 251 PLIPYPLITKEDINAIEMEEDKRDLISREISKFRDTHKKLEEEKGKKEKERQEIEKERRE 310
Query: 775 HDRSSQREKDRSDEDNNRTRDEHKEKILDRDRDREHGLDKVKTPDNKK 822
+R +RE++R + + R R+ +EK +R+R+RE D+ +T + +
Sbjct: 311 RERERERERERREREREREREREREKEKERERERERDRDRDRTKERDR 358
Score = 115 (45.5 bits), Expect = 3.7e-18, Sum P(4) = 3.7e-18
Identities = 23/59 (38%), Positives = 38/59 (64%)
Query: 760 KEEKSDAERERSR-RLHDRSSQREKDRS-DEDNNRTRDEHKEKILDRDRDREHGLDKVK 816
+ E+ + ERER R R ++ +RE++R D D +RT++ +++ DRDRDRE D+ K
Sbjct: 318 ERERREREREREREREREKEKERERERERDRDRDRTKERDRDRERDRDRDRERSSDRNK 376
Score = 110 (43.8 bits), Expect = 1.2e-17, Sum P(4) = 1.2e-17
Identities = 26/103 (25%), Positives = 54/103 (52%)
Query: 760 KEEKSDAERERSR---RLHDRSSQREKDRSDE-DNNRTRDEHKEKILDRDRDREHGLDKV 815
+E SD ++RSR + DR +RE++R E + R R+ +E+ +R+R+RE +
Sbjct: 368 RERSSDRNKDRSRSREKSRDREREREREREREREREREREREREREREREREREKDKKRD 427
Query: 816 KTPDNKKLLDAKQLIDMIPKTKEELFSYEI-NWAVYDKHELHE 857
+ D + + ++L + + KE + + NW + ++ + E
Sbjct: 428 REEDEEDAYERRKLERKL-REKEAAYQERLKNWEIRERKKTRE 469
Score = 109 (43.4 bits), Expect = 2.3e-18, Sum P(4) = 2.3e-18
Identities = 37/121 (30%), Positives = 63/121 (52%)
Query: 759 SKEEKSDAERERSRRLHDRSSQREKDRSDEDNNRTRDEHKEKILDRDRDREHGLDKVKTP 818
S+E+ D ERER R +R +RE++R + + R R+ +E+ D+ RDRE D+
Sbjct: 381 SREKSRDRERERERE-RERERERERER-EREREREREREREREKDKKRDREE--DEEDAY 436
Query: 819 DNKKLLDAKQLIDMIPKTKEELFSYEIN----WAVYDKH-ELHERMRPWISK---KITEF 870
+ +KL ++L + +E L ++EI Y+K E E R ++K ++ EF
Sbjct: 437 ERRKL--ERKLREKEAAYQERLKNWEIRERKKTREYEKEAEREEERRREMAKEAKRLKEF 494
Query: 871 L 871
L
Sbjct: 495 L 495
Score = 105 (42.0 bits), Expect = 3.8e-17, Sum P(4) = 3.8e-17
Identities = 22/63 (34%), Positives = 35/63 (55%)
Query: 760 KEEKSDAERERSRRLHDRSSQREKDRSDEDNNRTRDEHKEKILDRDRDREHGLDKVKTPD 819
+E + + ERER R DR R K+R D D R RD +E+ DR++DR +K + +
Sbjct: 332 REREKEKERERERE-RDRDRDRTKER-DRDRERDRDRDRERSSDRNKDRSRSREKSRDRE 389
Query: 820 NKK 822
++
Sbjct: 390 RER 392
Score = 103 (41.3 bits), Expect = 6.0e-17, Sum P(4) = 6.0e-17
Identities = 21/64 (32%), Positives = 39/64 (60%)
Query: 760 KEEKSDAERERSR-RLHDRSSQREKDRSDEDNNRTRDEHKEKILDRDRDREHGLDKVKTP 818
+E++ + ERER R R DR+ +R++DR + D +R R+ ++ DR R RE D+ +
Sbjct: 334 REKEKERERERERDRDRDRTKERDRDR-ERDRDRDRERSSDRNKDRSRSREKSRDRERER 392
Query: 819 DNKK 822
+ ++
Sbjct: 393 ERER 396
Score = 99 (39.9 bits), Expect = 1.5e-16, Sum P(4) = 1.5e-16
Identities = 20/66 (30%), Positives = 39/66 (59%)
Query: 760 KEEKSDAERERSRRLHDRSSQREKDRSDE---DNNRTRDEHKEKILDRDRDREHGLDKVK 816
+E + D +R+R++ DR +R++DR E D N+ R +EK DR+R+RE ++ +
Sbjct: 342 RERERDRDRDRTKE-RDRDRERDRDRDRERSSDRNKDRSRSREKSRDRERERERERERER 400
Query: 817 TPDNKK 822
+ ++
Sbjct: 401 ERERER 406
Score = 58 (25.5 bits), Expect = 3.2e-40, Sum P(5) = 3.2e-40
Identities = 16/39 (41%), Positives = 20/39 (51%)
Query: 124 PGVPGQPPN-PALRPYAPIPNGYGAVPAPASGLPRYPAP 161
PG+P PP P P P+P G +P P S + PAP
Sbjct: 19 PGIP--PPQFPGFPP--PVPPGTPMIPVPMSIMA--PAP 51
Score = 58 (25.5 bits), Expect = 3.2e-40, Sum P(5) = 3.2e-40
Identities = 16/43 (37%), Positives = 18/43 (41%)
Query: 121 MQYPGVPGQPPN--PALRPYAPIPNGYGAVPAPASGLPRYPAP 161
M +P +PP PAL P P P G P G P P P
Sbjct: 1 MSFPPHLNRPPMGIPALPPGIPPPQFPGFPPPVPPGTPMIPVP 43
Score = 57 (25.1 bits), Expect = 3.2e-40, Sum P(5) = 3.2e-40
Identities = 17/60 (28%), Positives = 30/60 (50%)
Query: 748 AEFAKRISNV--NSKEEKSDAERERSRRLHDRSSQREKDRSDEDNNRTRD-EHKEKILDR 804
A+ AKR+ + +++ D + R L R REK+ ++ +R R+ E E+I R
Sbjct: 485 AKEAKRLKEFLEDYDDDRDDPKYYRGSALQKRLRDREKEMEADERDRKREKEELEEIRQR 544
Score = 56 (24.8 bits), Expect = 5.1e-40, Sum P(5) = 5.1e-40
Identities = 14/31 (45%), Positives = 15/31 (48%)
Query: 60 PA-PASLPPAPVQSFVPPTQP-ISYRPVPMS 88
PA P +PP F PP P PVPMS
Sbjct: 15 PALPPGIPPPQFPGFPPPVPPGTPMIPVPMS 45
Score = 54 (24.1 bits), Expect = 3.1e-13, Sum P(4) = 3.1e-13
Identities = 35/127 (27%), Positives = 55/127 (43%)
Query: 759 SKEEKSDAERERSRRLHDRSSQREKDRSDEDNNRTRDEHK-------EKILDRDRDREHG 811
++E + +AERE RR + ED + RD+ K +K L RDR++E
Sbjct: 467 TREYEKEAEREEERRREMAKEAKRLKEFLEDYDDDRDDPKYYRGSALQKRL-RDREKEME 525
Query: 812 LD-KVKTPDNKKLLDAKQ--LIDMIPKTKEELFSYEINWAVYDKHELHERMRPWISKKIT 868
D + + + ++L + +Q L + P EL E E R +P I K+
Sbjct: 526 ADERDRKREKEELEEIRQRLLAEGHPDPDAELQRME--------QEAERRRQPQI-KQEP 576
Query: 869 EFLGEEE 875
E EEE
Sbjct: 577 ESEEEEE 583
Score = 53 (23.7 bits), Expect = 3.9e-13, Sum P(4) = 3.9e-13
Identities = 9/43 (20%), Positives = 23/43 (53%)
Query: 767 ERERSRRLHDRSSQREKDRSDEDNNRTRDEHKEKILDRDRDRE 809
E+E RR + Q + +E+ + ++E +E+ ++ + + E
Sbjct: 561 EQEAERRRQPQIKQEPESEEEEEEKQEKEEKREEPVEEEEEPE 603
Score = 52 (23.4 bits), Expect = 3.2e-40, Sum P(5) = 3.2e-40
Identities = 23/135 (17%), Positives = 53/135 (39%)
Query: 325 GKEDESVQSVEKNEPTKSPENLKDNETGNKESHDPTNFGVVTEEDRKADQEALEKLTCMV 384
GK+++ Q +EK + E ++ E +E E++R+ ++E ++
Sbjct: 295 GKKEKERQEIEKERRERERERERERERREREREREREREREKEKERERERER-DRDRDRT 353
Query: 385 EERLKTNXXXXXXXQTTADGSGISNSELPAKARDGDSDVDMIRNDIAEDKLDDETTSDTK 444
+ER + + + S K+RD + + + R E + + E + +
Sbjct: 354 KERDRDRERDRDRDRERSSDRNKDRSRSREKSRDRERERERERERERERERERERERERE 413
Query: 445 AS-DHDRPETSSPDR 458
+ +R + DR
Sbjct: 414 REREREREKDKKRDR 428
Score = 51 (23.0 bits), Expect = 6.1e-13, Sum P(4) = 6.1e-13
Identities = 14/43 (32%), Positives = 25/43 (58%)
Query: 768 RERSR-RLHDRSSQREKDRSDEDNNRTRDEHKEKILDRDRDRE 809
RER + R +++ ++RE++R E + KE + D D DR+
Sbjct: 462 RERKKTREYEKEAEREEERRREMAKEAK-RLKEFLEDYDDDRD 503
Score = 48 (22.0 bits), Expect = 7.9e-40, Sum P(5) = 7.9e-40
Identities = 15/47 (31%), Positives = 19/47 (40%)
Query: 415 KARDGDSDVDMIRN-DIAEDKLDDETTSDTKASDHDRPETSSPDRSR 460
+ RD D D R+ D D+ D S + D R S DR R
Sbjct: 344 RERDRDRDRTKERDRDRERDRDRDRERSSDRNKDRSRSREKSRDRER 390
Score = 48 (22.0 bits), Expect = 1.2e-12, Sum P(4) = 1.2e-12
Identities = 13/44 (29%), Positives = 20/44 (45%)
Query: 694 KRTAVPSVFHVEXXXXXXXXXXMRPLVPIDYSTEELQAAQPHVS 737
K+ V SVF+ R LVP+DY ++ A + V+
Sbjct: 682 KKLPVDSVFNKFEDEDSDDVPRKRKLVPLDYGEDDKNATKGTVN 725
Score = 45 (20.9 bits), Expect = 5.1e-39, Sum P(5) = 5.1e-39
Identities = 8/38 (21%), Positives = 18/38 (47%)
Query: 763 KSDAERERSRRLHDRSSQREKDRSDEDNNRTRDEHKEK 800
+ +AER R ++ E++ ++ R+E E+
Sbjct: 561 EQEAERRRQPQIKQEPESEEEEEEKQEKEEKREEPVEE 598
Score = 40 (19.1 bits), Expect = 5.1e-39, Sum P(5) = 5.1e-39
Identities = 9/21 (42%), Positives = 13/21 (61%)
Query: 437 DETTSDTKASDHDRPETSSPD 457
DE + KA+ + RPET + D
Sbjct: 170 DEWKAKKKANGNARPETVTND 190
Score = 39 (18.8 bits), Expect = 1.1e-37, Sum P(5) = 1.1e-37
Identities = 7/14 (50%), Positives = 11/14 (78%)
Query: 367 EEDRKADQEALEKL 380
E DRK ++E LE++
Sbjct: 528 ERDRKREKEELEEI 541
>UNIPROTKB|E1BHM5 [details] [associations]
symbol:RBM25 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0016607 "nuclear speck" evidence=IEA] [GO:0006915
"apoptotic process" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0003729 "mRNA binding" evidence=IEA] [GO:0000381
"regulation of alternative mRNA splicing, via spliceosome"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002483 InterPro:IPR012677 Pfam:PF00076 Pfam:PF01480
PROSITE:PS50102 PROSITE:PS51025 SMART:SM00311 SMART:SM00360
GO:GO:0005737 GO:GO:0006915 GO:GO:0000166 GO:GO:0016607
GO:GO:0003729 GO:GO:0006397 Gene3D:3.30.70.330 Gene3D:1.20.1390.10
GO:GO:0000381 CTD:58517 KO:K12822 OMA:EDINAME SUPFAM:SSF101233
GeneTree:ENSGT00700000104356 EMBL:DAAA02029591 EMBL:DAAA02029588
EMBL:DAAA02029589 EMBL:DAAA02029590 IPI:IPI00692901
RefSeq:XP_002691044.2 RefSeq:XP_884737.3 UniGene:Bt.109575
Ensembl:ENSBTAT00000022826 GeneID:540258 KEGG:bta:540258
ArrayExpress:E1BHM5 Uniprot:E1BHM5
Length = 843
Score = 288 (106.4 bits), Expect = 8.3e-40, Sum P(5) = 8.3e-40
Identities = 57/144 (39%), Positives = 90/144 (62%)
Query: 787 DEDNNRTRDEHKEKILDRDRDREHGLD-KVKTPDNKKLLDAKQLIDMIPKTKEELFSYEI 845
DED++ + K LD D ++ V T + +K + K LI+ IP K ELF+Y +
Sbjct: 700 DEDSDDVPRKRKLVPLDYGEDDKNAAKGTVNTEEKRKHI--KSLIEKIPTAKPELFAYPL 757
Query: 846 NWAVYDKHELHERMRPWISKKITEFLGEEETTLVDYIVSSTQDHVKASQMLELLQTILDD 905
+W++ D + R+RPWI+KKI E++GEEE TLVD++ S H +L+ + +LD+
Sbjct: 758 DWSIVDSILMERRIRPWINKKIIEYIGEEEATLVDFVCSKVMAHSSPQSILDDVAMVLDE 817
Query: 906 EAEMFVLKMWRMLIFEIKKVETGL 929
EAE+F++KMWR+LI+E + + GL
Sbjct: 818 EAEVFIVKMWRLLIYETEAKKIGL 841
Score = 180 (68.4 bits), Expect = 8.3e-40, Sum P(5) = 8.3e-40
Identities = 38/89 (42%), Positives = 53/89 (59%)
Query: 217 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRA 276
P T V+VG I+ A + +L CG V SWKR Q S G + FGFCE++ E LRA
Sbjct: 85 PTTTVFVGNISEKASDMLIRQLLAKCGLVLSWKRVQGAS-GKLQAFGFCEYKEPESTLRA 143
Query: 277 LRLLNKFNIDGQELMLKVDQATREYLERY 305
LRLL+ I ++L++KVD T+ L+ +
Sbjct: 144 LRLLHDLQIGEKKLLVKVDAKTKAQLDEW 172
Score = 125 (49.1 bits), Expect = 2.8e-19, Sum P(3) = 2.8e-19
Identities = 29/114 (25%), Positives = 58/114 (50%)
Query: 718 PLVPIDYST-EELQAAQPHVSGAN--PPNLAAAAEFAKRISNVNSKEEKSDAERERSRRL 774
PL+P T E++ A + + ++ + K++ K+EK E E+ RR
Sbjct: 252 PLIPYPLITKEDINAIEMEEDKRDLISREISKFRDTHKKLEEEKGKKEKERQEIEKERRE 311
Query: 775 HDRSSQREKDRSDEDNNRTRDEHKEKILDRDRDREHGLDKVKTPDNKKLLDAKQ 828
+R +RE++R + + R R+ +EK +R+R+RE D+ +T + + D ++
Sbjct: 312 RERERERERERREREREREREREREKEKERERERERDRDRDRTKERDRDRDRER 365
Score = 115 (45.5 bits), Expect = 3.0e-18, Sum P(3) = 3.0e-18
Identities = 25/70 (35%), Positives = 40/70 (57%)
Query: 760 KEEKSDAERERSRRLHDRSSQREKDRSDE-------DNNRTRDEHKEKILDRDRDREHGL 812
+E + + ERER RR +R +RE++R E + +R RD KE+ DRDR+R+
Sbjct: 310 RERERERERERERREREREREREREREKEKERERERERDRDRDRTKERDRDRDRERDRDR 369
Query: 813 DKVKTPDNKK 822
D+ ++ D K
Sbjct: 370 DRERSSDRNK 379
Score = 113 (44.8 bits), Expect = 4.7e-18, Sum P(3) = 4.7e-18
Identities = 36/127 (28%), Positives = 67/127 (52%)
Query: 759 SKEEKSDAERERSR-RLHDRSSQREKDRS-DEDNNRTRDEHKEKILDRDRDREHGLDKVK 816
+KE D +RER R R +RSS R KDRS + +R R+ +E+ +R+R+RE ++ +
Sbjct: 354 TKERDRDRDRERDRDRDRERSSDRNKDRSRSREKSRDRERERERERERERERERERERER 413
Query: 817 TPDNKKLLDAKQLIDMI-PKTKEELFSYE---INWAVYDKHELH-ERMRPWI---SKKIT 868
+ ++ + ++ D + ++E +YE + + +K + ER++ W KK
Sbjct: 414 EREREREREREREKDKKRDREEDEEDAYERRKLERKLREKEAAYQERLKNWEIRERKKTR 473
Query: 869 EFLGEEE 875
E+ E E
Sbjct: 474 EYEKEAE 480
Score = 111 (44.1 bits), Expect = 7.6e-18, Sum P(3) = 7.6e-18
Identities = 38/122 (31%), Positives = 64/122 (52%)
Query: 759 SKEEKSDAERERSR-RLHDRSSQREKDRSDEDNNRTRDEHKEKILDRDRDREHGLDKVKT 817
S+E+ D ERER R R +R +RE++R + + R R+ +E+ D+ RDRE D+
Sbjct: 384 SREKSRDRERERERERERERERERERER-EREREREREREREREKDKKRDREE--DEEDA 440
Query: 818 PDNKKLLDAKQLIDMIPKTKEELFSYEIN----WAVYDKH-ELHERMRPWISK---KITE 869
+ +KL ++L + +E L ++EI Y+K E E R ++K ++ E
Sbjct: 441 YERRKL--ERKLREKEAAYQERLKNWEIRERKKTREYEKEAEREEERRREMAKEAKRLKE 498
Query: 870 FL 871
FL
Sbjct: 499 FL 500
Score = 109 (43.4 bits), Expect = 1.2e-17, Sum P(3) = 1.2e-17
Identities = 23/64 (35%), Positives = 37/64 (57%)
Query: 760 KEEKSDAERERSR-RLHDRSSQREKDRSDEDNNRTRDEHKEKILDRDRDREHGLDKVKTP 818
+E + + ERER R R DR +E+DR D D R RD +E+ DR++DR +K +
Sbjct: 333 REREKEKERERERERDRDRDRTKERDR-DRDRERDRDRDRERSSDRNKDRSRSREKSRDR 391
Query: 819 DNKK 822
+ ++
Sbjct: 392 ERER 395
Score = 100 (40.3 bits), Expect = 1.0e-16, Sum P(3) = 1.0e-16
Identities = 21/67 (31%), Positives = 40/67 (59%)
Query: 760 KEEKSDAERERSR-RLHDRSSQREKDRSDE---DNNRTRDEHKEKILDRDRDREHGLDKV 815
+E + D +R+R++ R DR +R++DR E D N+ R +EK DR+R+RE ++
Sbjct: 343 RERERDRDRDRTKERDRDRDRERDRDRDRERSSDRNKDRSRSREKSRDRERERERERERE 402
Query: 816 KTPDNKK 822
+ + ++
Sbjct: 403 RERERER 409
Score = 58 (25.5 bits), Expect = 8.3e-40, Sum P(5) = 8.3e-40
Identities = 16/39 (41%), Positives = 20/39 (51%)
Query: 124 PGVPGQPPN-PALRPYAPIPNGYGAVPAPASGLPRYPAP 161
PG+P PP P P P+P G +P P S + PAP
Sbjct: 19 PGIP--PPQFPGFPP--PVPPGTPMIPVPMSIMA--PAP 51
Score = 58 (25.5 bits), Expect = 8.3e-40, Sum P(5) = 8.3e-40
Identities = 16/43 (37%), Positives = 18/43 (41%)
Query: 121 MQYPGVPGQPPN--PALRPYAPIPNGYGAVPAPASGLPRYPAP 161
M +P +PP PAL P P P G P G P P P
Sbjct: 1 MSFPPHLNRPPMGIPALPPGIPPPQFPGFPPPVPPGTPMIPVP 43
Score = 57 (25.1 bits), Expect = 8.3e-40, Sum P(5) = 8.3e-40
Identities = 17/60 (28%), Positives = 30/60 (50%)
Query: 748 AEFAKRISNV--NSKEEKSDAERERSRRLHDRSSQREKDRSDEDNNRTRD-EHKEKILDR 804
A+ AKR+ + +++ D + R L R REK+ ++ +R R+ E E+I R
Sbjct: 490 AKEAKRLKEFLEDYDDDRDDPKYYRGSALQKRLRDREKEMEADERDRKREKEELEEIRQR 549
Score = 56 (24.8 bits), Expect = 1.3e-39, Sum P(5) = 1.3e-39
Identities = 14/31 (45%), Positives = 15/31 (48%)
Query: 60 PA-PASLPPAPVQSFVPPTQP-ISYRPVPMS 88
PA P +PP F PP P PVPMS
Sbjct: 15 PALPPGIPPPQFPGFPPPVPPGTPMIPVPMS 45
Score = 54 (24.1 bits), Expect = 7.9e-13, Sum P(4) = 7.9e-13
Identities = 9/43 (20%), Positives = 23/43 (53%)
Query: 767 ERERSRRLHDRSSQREKDRSDEDNNRTRDEHKEKILDRDRDRE 809
E+E RR + Q + +E+ + ++E +E+ ++ + + E
Sbjct: 566 EQEAERRRQPQIKQEPESEEEEEEKQEKEEKREEPMEEEEEPE 608
Score = 54 (24.1 bits), Expect = 7.9e-13, Sum P(4) = 7.9e-13
Identities = 35/127 (27%), Positives = 55/127 (43%)
Query: 759 SKEEKSDAERERSRRLHDRSSQREKDRSDEDNNRTRDEHK-------EKILDRDRDREHG 811
++E + +AERE RR + ED + RD+ K +K L RDR++E
Sbjct: 472 TREYEKEAEREEERRREMAKEAKRLKEFLEDYDDDRDDPKYYRGSALQKRL-RDREKEME 530
Query: 812 LD-KVKTPDNKKLLDAKQ--LIDMIPKTKEELFSYEINWAVYDKHELHERMRPWISKKIT 868
D + + + ++L + +Q L + P EL E E R +P I K+
Sbjct: 531 ADERDRKREKEELEEIRQRLLAEGHPDPDAELQRME--------QEAERRRQPQI-KQEP 581
Query: 869 EFLGEEE 875
E EEE
Sbjct: 582 ESEEEEE 588
Score = 52 (23.4 bits), Expect = 1.3e-12, Sum P(4) = 1.3e-12
Identities = 14/44 (31%), Positives = 21/44 (47%)
Query: 694 KRTAVPSVFHVEXXXXXXXXXXMRPLVPIDYSTEELQAAQPHVS 737
K+ V SVF+ R LVP+DY ++ AA+ V+
Sbjct: 687 KKLPVDSVFNKFEDEDSDDVPRKRKLVPLDYGEDDKNAAKGTVN 730
Score = 51 (23.0 bits), Expect = 1.6e-12, Sum P(4) = 1.6e-12
Identities = 14/43 (32%), Positives = 25/43 (58%)
Query: 768 RERSR-RLHDRSSQREKDRSDEDNNRTRDEHKEKILDRDRDRE 809
RER + R +++ ++RE++R E + KE + D D DR+
Sbjct: 467 RERKKTREYEKEAEREEERRREMAKEAK-RLKEFLEDYDDDRD 508
Score = 48 (22.0 bits), Expect = 8.3e-40, Sum P(5) = 8.3e-40
Identities = 22/137 (16%), Positives = 52/137 (37%)
Query: 325 GKEDESVQSVEKNEPTKSPENLKDNETGNKESHDPTNFGVVTEEDRKADQEA-LEKLTCM 383
GK+++ Q +EK + E ++ E +E E++R+ ++E ++
Sbjct: 296 GKKEKERQEIEKERRERERERERERERREREREREREREREKEKERERERERDRDRDRTK 355
Query: 384 VEERLKTNXXXXXXXQTTADGSGISNSELPAKARDGDSDVDMIRNDIAEDKLDDETTSDT 443
+R + + + S K+RD + + + R E + + E +
Sbjct: 356 ERDRDRDRERDRDRDRERSSDRNKDRSRSREKSRDRERERERERERERERERERERERE- 414
Query: 444 KASDHDRPETSSPDRSR 460
+ + +R D+ R
Sbjct: 415 REREREREREREKDKKR 431
Score = 46 (21.3 bits), Expect = 1.1e-38, Sum P(5) = 1.1e-38
Identities = 8/38 (21%), Positives = 18/38 (47%)
Query: 763 KSDAERERSRRLHDRSSQREKDRSDEDNNRTRDEHKEK 800
+ +AER R ++ E++ ++ R+E E+
Sbjct: 566 EQEAERRRQPQIKQEPESEEEEEEKQEKEEKREEPMEE 603
Score = 39 (18.8 bits), Expect = 9.1e-38, Sum P(5) = 9.1e-38
Identities = 7/14 (50%), Positives = 11/14 (78%)
Query: 367 EEDRKADQEALEKL 380
E DRK ++E LE++
Sbjct: 533 ERDRKREKEELEEI 546
>UNIPROTKB|P49756 [details] [associations]
symbol:RBM25 "RNA-binding protein 25" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0006397
"mRNA processing" evidence=IEA] [GO:0008380 "RNA splicing"
evidence=IEA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0000381 "regulation of alternative mRNA splicing, via
spliceosome" evidence=IDA] [GO:0016607 "nuclear speck"
evidence=IDA] [GO:0003729 "mRNA binding" evidence=IDA] [GO:0006915
"apoptotic process" evidence=IDA] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA] [GO:0005737
"cytoplasm" evidence=IDA] InterPro:IPR000504 InterPro:IPR002483
InterPro:IPR012677 Pfam:PF00076 Pfam:PF01480 PROSITE:PS50102
PROSITE:PS51025 SMART:SM00311 SMART:SM00360 GO:GO:0005737
GO:GO:0006915 EMBL:CH471061 GO:GO:0008380 GO:GO:0000166
GO:GO:0016607 GO:GO:0003729 GO:GO:0006397 Gene3D:3.30.70.330
Gene3D:1.20.1390.10 GO:GO:0000381 EMBL:AL442663 EMBL:AF109907
EMBL:AC004858 EMBL:AK026107 EMBL:AK094697 EMBL:BC062440
EMBL:BC083496 EMBL:BC111066 EMBL:BC113389 EMBL:BC113391
EMBL:BC136775 EMBL:BC136776 EMBL:BC144407 EMBL:L40392
IPI:IPI00004273 IPI:IPI00924634 IPI:IPI00925670 IPI:IPI00926163
RefSeq:NP_067062.1 UniGene:Hs.531106 PDB:3V53 PDBsum:3V53
ProteinModelPortal:P49756 SMR:P49756 IntAct:P49756
MINT:MINT-4545359 STRING:P49756 PhosphoSite:P49756 DMDM:226693631
PaxDb:P49756 PRIDE:P49756 DNASU:58517 Ensembl:ENST00000261973
Ensembl:ENST00000525321 Ensembl:ENST00000526754
Ensembl:ENST00000527432 Ensembl:ENST00000528081
Ensembl:ENST00000540173 GeneID:58517 KEGG:hsa:58517 UCSC:uc001xnn.4
UCSC:uc001xno.3 CTD:58517 GeneCards:GC14P073525 HGNC:HGNC:23244
HPA:HPA003025 MIM:612427 neXtProt:NX_P49756 PharmGKB:PA134912024
eggNOG:NOG250187 HOVERGEN:HBG068941 InParanoid:P49756 KO:K12822
OMA:EDINAME OrthoDB:EOG498V0R PhylomeDB:P49756 ChiTaRS:RBM25
GenomeRNAi:58517 NextBio:65066 ArrayExpress:P49756 Bgee:P49756
CleanEx:HS_RBM25 Genevestigator:P49756 GermOnline:ENSG00000119707
SUPFAM:SSF101233 Uniprot:P49756
Length = 843
Score = 288 (106.4 bits), Expect = 8.3e-40, Sum P(5) = 8.3e-40
Identities = 57/144 (39%), Positives = 90/144 (62%)
Query: 787 DEDNNRTRDEHKEKILDRDRDREHGLD-KVKTPDNKKLLDAKQLIDMIPKTKEELFSYEI 845
DED++ + K LD D ++ V T + +K + K LI+ IP K ELF+Y +
Sbjct: 700 DEDSDDVPRKRKLVPLDYGEDDKNATKGTVNTEEKRKHI--KSLIEKIPTAKPELFAYPL 757
Query: 846 NWAVYDKHELHERMRPWISKKITEFLGEEETTLVDYIVSSTQDHVKASQMLELLQTILDD 905
+W++ D + R+RPWI+KKI E++GEEE TLVD++ S H +L+ + +LD+
Sbjct: 758 DWSIVDSILMERRIRPWINKKIIEYIGEEEATLVDFVCSKVMAHSSPQSILDDVAMVLDE 817
Query: 906 EAEMFVLKMWRMLIFEIKKVETGL 929
EAE+F++KMWR+LI+E + + GL
Sbjct: 818 EAEVFIVKMWRLLIYETEAKKIGL 841
Score = 180 (68.4 bits), Expect = 8.3e-40, Sum P(5) = 8.3e-40
Identities = 38/89 (42%), Positives = 53/89 (59%)
Query: 217 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRA 276
P T V+VG I+ A + +L CG V SWKR Q S G + FGFCE++ E LRA
Sbjct: 85 PTTTVFVGNISEKASDMLIRQLLAKCGLVLSWKRVQGAS-GKLQAFGFCEYKEPESTLRA 143
Query: 277 LRLLNKFNIDGQELMLKVDQATREYLERY 305
LRLL+ I ++L++KVD T+ L+ +
Sbjct: 144 LRLLHDLQIGEKKLLVKVDAKTKAQLDEW 172
Score = 125 (49.1 bits), Expect = 2.8e-19, Sum P(3) = 2.8e-19
Identities = 29/114 (25%), Positives = 58/114 (50%)
Query: 718 PLVPIDYST-EELQAAQPHVSGAN--PPNLAAAAEFAKRISNVNSKEEKSDAERERSRRL 774
PL+P T E++ A + + ++ + K++ K+EK E E+ RR
Sbjct: 252 PLIPYPLITKEDINAIEMEEDKRDLISREISKFRDTHKKLEEEKGKKEKERQEIEKERRE 311
Query: 775 HDRSSQREKDRSDEDNNRTRDEHKEKILDRDRDREHGLDKVKTPDNKKLLDAKQ 828
+R +RE++R + + R R+ +EK +R+R+RE D+ +T + + D ++
Sbjct: 312 RERERERERERREREREREREREREKEKERERERERDRDRDRTKERDRDRDRER 365
Score = 115 (45.5 bits), Expect = 3.0e-18, Sum P(3) = 3.0e-18
Identities = 25/70 (35%), Positives = 40/70 (57%)
Query: 760 KEEKSDAERERSRRLHDRSSQREKDRSDE-------DNNRTRDEHKEKILDRDRDREHGL 812
+E + + ERER RR +R +RE++R E + +R RD KE+ DRDR+R+
Sbjct: 310 RERERERERERERREREREREREREREKEKERERERERDRDRDRTKERDRDRDRERDRDR 369
Query: 813 DKVKTPDNKK 822
D+ ++ D K
Sbjct: 370 DRERSSDRNK 379
Score = 113 (44.8 bits), Expect = 4.7e-18, Sum P(3) = 4.7e-18
Identities = 36/127 (28%), Positives = 67/127 (52%)
Query: 759 SKEEKSDAERERSR-RLHDRSSQREKDRS-DEDNNRTRDEHKEKILDRDRDREHGLDKVK 816
+KE D +RER R R +RSS R KDRS + +R R+ +E+ +R+R+RE ++ +
Sbjct: 354 TKERDRDRDRERDRDRDRERSSDRNKDRSRSREKSRDRERERERERERERERERERERER 413
Query: 817 TPDNKKLLDAKQLIDMI-PKTKEELFSYE---INWAVYDKHELH-ERMRPWI---SKKIT 868
+ ++ + ++ D + ++E +YE + + +K + ER++ W KK
Sbjct: 414 EREREREREREREKDKKRDREEDEEDAYERRKLERKLREKEAAYQERLKNWEIRERKKTR 473
Query: 869 EFLGEEE 875
E+ E E
Sbjct: 474 EYEKEAE 480
Score = 111 (44.1 bits), Expect = 7.6e-18, Sum P(3) = 7.6e-18
Identities = 38/122 (31%), Positives = 64/122 (52%)
Query: 759 SKEEKSDAERERSR-RLHDRSSQREKDRSDEDNNRTRDEHKEKILDRDRDREHGLDKVKT 817
S+E+ D ERER R R +R +RE++R + + R R+ +E+ D+ RDRE D+
Sbjct: 384 SREKSRDRERERERERERERERERERER-EREREREREREREREKDKKRDREE--DEEDA 440
Query: 818 PDNKKLLDAKQLIDMIPKTKEELFSYEIN----WAVYDKH-ELHERMRPWISK---KITE 869
+ +KL ++L + +E L ++EI Y+K E E R ++K ++ E
Sbjct: 441 YERRKL--ERKLREKEAAYQERLKNWEIRERKKTREYEKEAEREEERRREMAKEAKRLKE 498
Query: 870 FL 871
FL
Sbjct: 499 FL 500
Score = 109 (43.4 bits), Expect = 1.2e-17, Sum P(3) = 1.2e-17
Identities = 23/64 (35%), Positives = 37/64 (57%)
Query: 760 KEEKSDAERERSR-RLHDRSSQREKDRSDEDNNRTRDEHKEKILDRDRDREHGLDKVKTP 818
+E + + ERER R R DR +E+DR D D R RD +E+ DR++DR +K +
Sbjct: 333 REREKEKERERERERDRDRDRTKERDR-DRDRERDRDRDRERSSDRNKDRSRSREKSRDR 391
Query: 819 DNKK 822
+ ++
Sbjct: 392 ERER 395
Score = 100 (40.3 bits), Expect = 1.0e-16, Sum P(3) = 1.0e-16
Identities = 21/67 (31%), Positives = 40/67 (59%)
Query: 760 KEEKSDAERERSR-RLHDRSSQREKDRSDE---DNNRTRDEHKEKILDRDRDREHGLDKV 815
+E + D +R+R++ R DR +R++DR E D N+ R +EK DR+R+RE ++
Sbjct: 343 RERERDRDRDRTKERDRDRDRERDRDRDRERSSDRNKDRSRSREKSRDRERERERERERE 402
Query: 816 KTPDNKK 822
+ + ++
Sbjct: 403 RERERER 409
Score = 58 (25.5 bits), Expect = 8.3e-40, Sum P(5) = 8.3e-40
Identities = 16/39 (41%), Positives = 20/39 (51%)
Query: 124 PGVPGQPPN-PALRPYAPIPNGYGAVPAPASGLPRYPAP 161
PG+P PP P P P+P G +P P S + PAP
Sbjct: 19 PGIP--PPQFPGFPP--PVPPGTPMIPVPMSIMA--PAP 51
Score = 58 (25.5 bits), Expect = 8.3e-40, Sum P(5) = 8.3e-40
Identities = 16/43 (37%), Positives = 18/43 (41%)
Query: 121 MQYPGVPGQPPN--PALRPYAPIPNGYGAVPAPASGLPRYPAP 161
M +P +PP PAL P P P G P G P P P
Sbjct: 1 MSFPPHLNRPPMGIPALPPGIPPPQFPGFPPPVPPGTPMIPVP 43
Score = 57 (25.1 bits), Expect = 8.3e-40, Sum P(5) = 8.3e-40
Identities = 17/60 (28%), Positives = 30/60 (50%)
Query: 748 AEFAKRISNV--NSKEEKSDAERERSRRLHDRSSQREKDRSDEDNNRTRD-EHKEKILDR 804
A+ AKR+ + +++ D + R L R REK+ ++ +R R+ E E+I R
Sbjct: 490 AKEAKRLKEFLEDYDDDRDDPKYYRGSALQKRLRDREKEMEADERDRKREKEELEEIRQR 549
Score = 56 (24.8 bits), Expect = 1.3e-39, Sum P(5) = 1.3e-39
Identities = 14/31 (45%), Positives = 15/31 (48%)
Query: 60 PA-PASLPPAPVQSFVPPTQP-ISYRPVPMS 88
PA P +PP F PP P PVPMS
Sbjct: 15 PALPPGIPPPQFPGFPPPVPPGTPMIPVPMS 45
Score = 54 (24.1 bits), Expect = 7.9e-13, Sum P(4) = 7.9e-13
Identities = 9/43 (20%), Positives = 23/43 (53%)
Query: 767 ERERSRRLHDRSSQREKDRSDEDNNRTRDEHKEKILDRDRDRE 809
E+E RR + Q + +E+ + ++E +E+ ++ + + E
Sbjct: 566 EQEAERRRQPQIKQEPESEEEEEEKQEKEEKREEPMEEEEEPE 608
Score = 54 (24.1 bits), Expect = 7.9e-13, Sum P(4) = 7.9e-13
Identities = 35/127 (27%), Positives = 55/127 (43%)
Query: 759 SKEEKSDAERERSRRLHDRSSQREKDRSDEDNNRTRDEHK-------EKILDRDRDREHG 811
++E + +AERE RR + ED + RD+ K +K L RDR++E
Sbjct: 472 TREYEKEAEREEERRREMAKEAKRLKEFLEDYDDDRDDPKYYRGSALQKRL-RDREKEME 530
Query: 812 LD-KVKTPDNKKLLDAKQ--LIDMIPKTKEELFSYEINWAVYDKHELHERMRPWISKKIT 868
D + + + ++L + +Q L + P EL E E R +P I K+
Sbjct: 531 ADERDRKREKEELEEIRQRLLAEGHPDPDAELQRME--------QEAERRRQPQI-KQEP 581
Query: 869 EFLGEEE 875
E EEE
Sbjct: 582 ESEEEEE 588
Score = 51 (23.0 bits), Expect = 1.6e-12, Sum P(4) = 1.6e-12
Identities = 14/43 (32%), Positives = 25/43 (58%)
Query: 768 RERSR-RLHDRSSQREKDRSDEDNNRTRDEHKEKILDRDRDRE 809
RER + R +++ ++RE++R E + KE + D D DR+
Sbjct: 467 RERKKTREYEKEAEREEERRREMAKEAK-RLKEFLEDYDDDRD 508
Score = 48 (22.0 bits), Expect = 8.3e-40, Sum P(5) = 8.3e-40
Identities = 22/137 (16%), Positives = 52/137 (37%)
Query: 325 GKEDESVQSVEKNEPTKSPENLKDNETGNKESHDPTNFGVVTEEDRKADQEA-LEKLTCM 383
GK+++ Q +EK + E ++ E +E E++R+ ++E ++
Sbjct: 296 GKKEKERQEIEKERRERERERERERERREREREREREREREKEKERERERERDRDRDRTK 355
Query: 384 VEERLKTNXXXXXXXQTTADGSGISNSELPAKARDGDSDVDMIRNDIAEDKLDDETTSDT 443
+R + + + S K+RD + + + R E + + E +
Sbjct: 356 ERDRDRDRERDRDRDRERSSDRNKDRSRSREKSRDRERERERERERERERERERERERE- 414
Query: 444 KASDHDRPETSSPDRSR 460
+ + +R D+ R
Sbjct: 415 REREREREREREKDKKR 431
Score = 48 (22.0 bits), Expect = 3.1e-12, Sum P(4) = 3.1e-12
Identities = 13/44 (29%), Positives = 20/44 (45%)
Query: 694 KRTAVPSVFHVEXXXXXXXXXXMRPLVPIDYSTEELQAAQPHVS 737
K+ V SVF+ R LVP+DY ++ A + V+
Sbjct: 687 KKLPVDSVFNKFEDEDSDDVPRKRKLVPLDYGEDDKNATKGTVN 730
Score = 46 (21.3 bits), Expect = 1.1e-38, Sum P(5) = 1.1e-38
Identities = 8/38 (21%), Positives = 18/38 (47%)
Query: 763 KSDAERERSRRLHDRSSQREKDRSDEDNNRTRDEHKEK 800
+ +AER R ++ E++ ++ R+E E+
Sbjct: 566 EQEAERRRQPQIKQEPESEEEEEEKQEKEEKREEPMEE 603
Score = 39 (18.8 bits), Expect = 9.1e-38, Sum P(5) = 9.1e-38
Identities = 7/14 (50%), Positives = 11/14 (78%)
Query: 367 EEDRKADQEALEKL 380
E DRK ++E LE++
Sbjct: 533 ERDRKREKEELEEI 546
>UNIPROTKB|E1BSR5 [details] [associations]
symbol:RBM25 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0006397
"mRNA processing" evidence=IEA] [GO:0000381 "regulation of
alternative mRNA splicing, via spliceosome" evidence=IEA]
[GO:0003729 "mRNA binding" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0006915 "apoptotic process" evidence=IEA]
[GO:0016607 "nuclear speck" evidence=IEA] InterPro:IPR000504
InterPro:IPR002483 InterPro:IPR012677 Pfam:PF00076 Pfam:PF01480
PROSITE:PS50102 PROSITE:PS51025 SMART:SM00311 SMART:SM00360
GO:GO:0005737 GO:GO:0006915 GO:GO:0000166 GO:GO:0016607
GO:GO:0003729 GO:GO:0006397 Gene3D:3.30.70.330 Gene3D:1.20.1390.10
GO:GO:0000381 OMA:EDINAME SUPFAM:SSF101233
GeneTree:ENSGT00700000104356 EMBL:AADN02033574 EMBL:AADN02033573
IPI:IPI00591819 Ensembl:ENSGALT00000015198 Uniprot:E1BSR5
Length = 782
Score = 295 (108.9 bits), Expect = 1.0e-37, Sum P(4) = 1.0e-37
Identities = 58/144 (40%), Positives = 91/144 (63%)
Query: 787 DEDNNRTRDEHKEKILDR-DRDREHGLDKVKTPDNKKLLDAKQLIDMIPKTKEELFSYEI 845
DED++ + K LD D D+ + V T + +K + K LI+ IP K ELF+Y +
Sbjct: 639 DEDSDDVPRKRKLVPLDYGDEDKSNIKGSVNTEEKRKHI--KSLIEKIPTAKPELFAYPL 696
Query: 846 NWAVYDKHELHERMRPWISKKITEFLGEEETTLVDYIVSSTQDHVKASQMLELLQTILDD 905
+W++ D + R+RPWI+KKI E++GEEE TLVD++ S H +L+ + +LD+
Sbjct: 697 DWSIVDSTLMERRIRPWINKKIIEYIGEEEATLVDFVCSKVMAHSSPQSILDDVAMVLDE 756
Query: 906 EAEMFVLKMWRMLIFEIKKVETGL 929
EAE+F++KMWR+LI+E + + GL
Sbjct: 757 EAEVFIVKMWRLLIYETEAKKIGL 780
Score = 180 (68.4 bits), Expect = 1.0e-37, Sum P(4) = 1.0e-37
Identities = 38/89 (42%), Positives = 53/89 (59%)
Query: 217 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRA 276
P T V+VG I+ A + +L CG V SWKR Q S G + FGFCE++ E LRA
Sbjct: 43 PTTTVFVGNISEKASDMLIRQLLAKCGLVLSWKRVQGAS-GKLQAFGFCEYKEPESTLRA 101
Query: 277 LRLLNKFNIDGQELMLKVDQATREYLERY 305
LRLL+ I ++L++KVD T+ L+ +
Sbjct: 102 LRLLHDLQIGEKKLLVKVDAKTKAQLDEW 130
Score = 125 (49.1 bits), Expect = 8.9e-18, Sum P(3) = 8.9e-18
Identities = 23/71 (32%), Positives = 41/71 (57%)
Query: 752 KRISNVNSKEEKSDAERERSRRLHDRSSQREKDRSDEDNNRTRDEHKEKILDRDRDREHG 811
K++ K+EK E E+ RR +R +RE++R + + R R+ +EK +R+R+RE
Sbjct: 236 KKLEEEKGKKEKERQEIEKERRERERERERERERREREREREREREREKEKERERERERD 295
Query: 812 LDKVKTPDNKK 822
D+ +T D +
Sbjct: 296 RDRDRTKDRDR 306
Score = 117 (46.2 bits), Expect = 5.9e-17, Sum P(3) = 5.9e-17
Identities = 25/58 (43%), Positives = 35/58 (60%)
Query: 760 KEEKSDAERERSRRLH-DRSSQREKDRSDEDNNRTRDEHKEKILDRDRDREHGLDKVK 816
+E + + ERER R +R +RE+DR D D + RD +E+ DRDRDRE D+ K
Sbjct: 270 REREREREREREREKEKERERERERDR-DRDRTKDRDRDRERDRDRDRDRERSSDRNK 326
Score = 115 (45.5 bits), Expect = 9.4e-17, Sum P(3) = 9.4e-17
Identities = 23/58 (39%), Positives = 35/58 (60%)
Query: 760 KEEKSDAERERSRRLHDRSSQREKDRSDE---DNNRTRDEHKEKILDRDRDREHGLDK 814
+E + + ERER RR +R +RE++R E + R RD +++ DRDRDRE D+
Sbjct: 257 RERERERERERERREREREREREREREKEKERERERERDRDRDRTKDRDRDRERDRDR 314
Score = 113 (44.8 bits), Expect = 4.6e-17, Sum P(3) = 4.6e-17
Identities = 36/125 (28%), Positives = 65/125 (52%)
Query: 759 SKEEKSDAERERSR-RLHDRSSQREKDRSDEDNNRTRDEHKEKILDRDRDREHGLDKVKT 817
+K+ D ER+R R R +RSS R KDRS ++RD +E+ +R+R+RE ++ +
Sbjct: 301 TKDRDRDRERDRDRDRDRERSSDRNKDRS-RSREKSRDRERERERERERERERERERERE 359
Query: 818 PDNKKLLDAKQLIDMIPKTKEELFSYE---INWAVYDKHELH-ERMRPWI---SKKITEF 870
+ ++ D K+ + ++E +YE + + +K + ER++ W KK E+
Sbjct: 360 REREREKDKKR-----DREEDEEDAYERRKLERKLREKEAAYQERLKNWEIRERKKSREY 414
Query: 871 LGEEE 875
E E
Sbjct: 415 EKEAE 419
Score = 107 (42.7 bits), Expect = 1.9e-16, Sum P(3) = 1.9e-16
Identities = 40/130 (30%), Positives = 65/130 (50%)
Query: 760 KEEKSDAERERSR-RLHDRSSQREKDRSDE-DNNRTRDEHKEKILDRDRDREHGLDKVKT 817
++ D +RERS R DRS REK R E + R R+ +E+ +R+R+RE +K K
Sbjct: 310 RDRDRDRDRERSSDRNKDRSRSREKSRDREREREREREREREREREREREREREREKDKK 369
Query: 818 PDNKK-LLDAKQLIDMIPKTKEELFSYEI---NWAV--------YDKH-ELHERMRPWIS 864
D ++ DA + + K +E+ +Y+ NW + Y+K E E R ++
Sbjct: 370 RDREEDEEDAYERRKLERKLREKEAAYQERLKNWEIRERKKSREYEKEAEREEERRREMA 429
Query: 865 K---KITEFL 871
K ++ EFL
Sbjct: 430 KEAKRLKEFL 439
Score = 106 (42.4 bits), Expect = 7.8e-16, Sum P(3) = 7.8e-16
Identities = 22/64 (34%), Positives = 36/64 (56%)
Query: 760 KEEKSDAERERSRRLHDRSSQREKDRS-DEDNNRTRDEHKEKILDRDRDREHGLDKVKTP 818
+E + + ERER R DR R KDR D + +R RD +E+ DR++DR +K +
Sbjct: 280 REREKEKERERERE-RDRDRDRTKDRDRDRERDRDRDRDRERSSDRNKDRSRSREKSRDR 338
Query: 819 DNKK 822
+ ++
Sbjct: 339 ERER 342
Score = 105 (42.0 bits), Expect = 9.9e-16, Sum P(3) = 9.9e-16
Identities = 22/65 (33%), Positives = 38/65 (58%)
Query: 760 KEEKSDAERERSR-RLHDRSSQREKDRS-DEDNNRTRDEHKEKILDRDRDREHGLDKVKT 817
+E++ + ERER R R DR+ R++DR D D +R R+ ++ DR R RE D+ +
Sbjct: 282 REKEKERERERERDRDRDRTKDRDRDRERDRDRDRDRERSSDRNKDRSRSREKSRDRERE 341
Query: 818 PDNKK 822
+ ++
Sbjct: 342 RERER 346
Score = 103 (41.3 bits), Expect = 4.9e-16, Sum P(3) = 4.9e-16
Identities = 31/109 (28%), Positives = 54/109 (49%)
Query: 760 KEEKSDAERERSR-RLHDRSSQREKDRS-DEDNNRTRDEHK------EKILDRDRDREHG 811
KE + + ER+R R R DR RE+DR D D R+ D +K EK DR+R+RE
Sbjct: 286 KERERERERDRDRDRTKDRDRDRERDRDRDRDRERSSDRNKDRSRSREKSRDRERERERE 345
Query: 812 LDKVKTPDNKKLLDAKQLIDMIPKTKEELFSYEINWAVYDKHELHERMR 860
++ + + ++ + ++ + K E E Y++ +L ++R
Sbjct: 346 REREREREREREREREREREKDKKRDRE----EDEEDAYERRKLERKLR 390
Score = 82 (33.9 bits), Expect = 6.8e-14, Sum P(3) = 6.8e-14
Identities = 23/71 (32%), Positives = 38/71 (53%)
Query: 755 SNVNSKEEKSDAERERSR-RLHDRSSQREKDRSDE-DNNRTRDEHKEKILDRDRDREHGL 812
S S++ + + ERER R R +R +RE++R E D R R+E +E +R R E L
Sbjct: 331 SREKSRDREREREREREREREREREREREREREREKDKKRDREEDEEDAYER-RKLERKL 389
Query: 813 DKVKTPDNKKL 823
+ + ++L
Sbjct: 390 REKEAAYQERL 400
Score = 67 (28.6 bits), Expect = 7.3e-12, Sum P(3) = 7.3e-12
Identities = 14/56 (25%), Positives = 32/56 (57%)
Query: 768 RERSRRLHDRSSQREKDRSD-EDNNRTRDEHKEKILDRDRDREHGLDKVKTPDNKK 822
R+ ++L + ++EK+R + E R R+ +E+ +R R+RE ++ + + +K
Sbjct: 232 RDTHKKLEEEKGKKEKERQEIEKERRERERERERERER-REREREREREREREKEK 286
Score = 57 (25.1 bits), Expect = 2.3e-11, Sum P(3) = 2.3e-11
Identities = 36/127 (28%), Positives = 55/127 (43%)
Query: 759 SKEEKSDAERERSRRLHDRSSQREKDRSDEDNNRTRDEHK-------EKILDRDRDREHG 811
S+E + +AERE RR + ED + RD+ K +K L RDR++E
Sbjct: 411 SREYEKEAEREEERRREMAKEAKRLKEFLEDYDDDRDDPKYYRGSALQKRL-RDREKEME 469
Query: 812 LD-KVKTPDNKKLLDAKQ--LIDMIPKTKEELFSYEINWAVYDKHELHERMRPWISKKIT 868
D + + + ++L + +Q L + P EL E E R +P I K+
Sbjct: 470 ADERDRKREKEELEEIRQRLLAEGHPDPDAELQRME--------QEAERRRQPQI-KQEP 520
Query: 869 EFLGEEE 875
E EEE
Sbjct: 521 ESEEEEE 527
Score = 54 (24.1 bits), Expect = 4.7e-11, Sum P(3) = 4.7e-11
Identities = 14/43 (32%), Positives = 26/43 (60%)
Query: 767 ERERSRRLHDRSSQREKDRSDEDNNRTRDEHKEKILDRDRDRE 809
ER++SR +++ ++RE++R E + KE + D D DR+
Sbjct: 407 ERKKSRE-YEKEAEREEERRREMAKEAK-RLKEFLEDYDDDRD 447
Score = 52 (23.4 bits), Expect = 7.5e-11, Sum P(3) = 7.5e-11
Identities = 13/35 (37%), Positives = 17/35 (48%)
Query: 694 KRTAVPSVFHVEXXXXXXXXXXMRPLVPIDYSTEE 728
K+ AV SVF+ R LVP+DY E+
Sbjct: 626 KKLAVDSVFNKFDDEDSDDVPRKRKLVPLDYGDED 660
Score = 48 (22.0 bits), Expect = 1.0e-37, Sum P(4) = 1.0e-37
Identities = 9/40 (22%), Positives = 23/40 (57%)
Query: 763 KSDAERERSRRLHDR--SSQREKDRSDEDNNRTRDEHKEK 800
+ +AER R ++ S + E+++++++ R E +E+
Sbjct: 505 EQEAERRRQPQIKQEPESEEEEEEKAEKEEKREEPEEEEE 544
Score = 47 (21.6 bits), Expect = 1.0e-37, Sum P(4) = 1.0e-37
Identities = 11/51 (21%), Positives = 24/51 (47%)
Query: 325 GKEDESVQSVEKNEPTKSPENLKDNETGNKESHDPTNFGVVTEEDRKADQE 375
GK+++ Q +EK + E ++ E +E E++R+ ++E
Sbjct: 243 GKKEKERQEIEKERRERERERERERERREREREREREREREKEKERERERE 293
Score = 47 (21.6 bits), Expect = 1.0e-37, Sum P(4) = 1.0e-37
Identities = 30/137 (21%), Positives = 50/137 (36%)
Query: 328 DESVQSVEKNEPTK---SPENLKDNETGNKESHDPTNFGVVTEEDRKADQEALEKLTCMV 384
+E + ++E E + S E K +T K + G +E ++ ++E E+
Sbjct: 208 EEDINAIEMEEDKRDLISREISKFRDTHKKLEEEK---GKKEKERQEIEKERRERERERE 264
Query: 385 EERLKTNXXXXXXXQTTADGSGISNSELPA-KARDGDSDVDMIRNDIAEDKLDDETTSDT 443
ER + + + E + RD D D R + D E +SD
Sbjct: 265 RERERREREREREREREREKEKERERERERDRDRDRTKDRDRDRERDRDRDRDRERSSD- 323
Query: 444 KASDHDRPETSSPDRSR 460
+ D R S DR R
Sbjct: 324 RNKDRSRSREKSRDRER 340
Score = 47 (21.6 bits), Expect = 2.4e-10, Sum P(3) = 2.4e-10
Identities = 9/43 (20%), Positives = 21/43 (48%)
Query: 767 ERERSRRLHDRSSQREKDRSDEDNNRTRDEHKEKILDRDRDRE 809
E+E RR + Q + +E+ ++E +E+ + + + E
Sbjct: 505 EQEAERRRQPQIKQEPESEEEEEEKAEKEEKREEPEEEEEEPE 547
Score = 47 (21.6 bits), Expect = 7.6e-10, Sum P(3) = 7.6e-10
Identities = 17/74 (22%), Positives = 35/74 (47%)
Query: 755 SNVNSKEEKSDAERERSRRLHDRSSQREKDRS-DEDNNRTR-DEHKEKILDRD----RDR 808
S +N+ ++SD+ + ++ ++ E S +ED N +E K ++ R+ RD
Sbjct: 177 SELNAPSQESDSHPRKKKK--EKKEDYETSLSIEEDINAIEMEEDKRDLISREISKFRDT 234
Query: 809 EHGLDKVKTPDNKK 822
L++ K K+
Sbjct: 235 HKKLEEEKGKKEKE 248
Score = 45 (20.9 bits), Expect = 1.2e-36, Sum P(3) = 1.2e-36
Identities = 11/34 (32%), Positives = 16/34 (47%)
Query: 327 EDESVQSVEKNEPTKSPENLKDNETGNKESHDPT 360
E+E + EK E + PE ++ E K PT
Sbjct: 523 EEEEEEKAEKEEKREEPEE-EEEEPEQKPCLKPT 555
Score = 42 (19.8 bits), Expect = 3.3e-37, Sum P(4) = 3.3e-37
Identities = 10/22 (45%), Positives = 15/22 (68%)
Query: 437 DETTSDTKASD-HDRPETSSPD 457
DE + KAS+ + RPET++ D
Sbjct: 128 DEWKAKKKASNGNSRPETTNDD 149
Score = 39 (18.8 bits), Expect = 6.7e-37, Sum P(4) = 6.7e-37
Identities = 7/14 (50%), Positives = 11/14 (78%)
Query: 367 EEDRKADQEALEKL 380
E DRK ++E LE++
Sbjct: 472 ERDRKREKEELEEI 485
Score = 39 (18.8 bits), Expect = 4.2e-09, Sum P(2) = 4.2e-09
Identities = 24/106 (22%), Positives = 37/106 (34%)
Query: 342 SPENLKDNETGNKESHDPTNFGVVTEEDRKADQEALEKLTCMVEERLKTNXXXXXXXQTT 401
S + N T N D + G++ + DQ+ E+ + LK
Sbjct: 564 SVSSASGNATPNTPG-DESPCGIIIPHENSPDQQQPEEHRPKIGLSLKLGACNSPNQPNA 622
Query: 402 ADGSGISNSELPAKARDGDSD-VDMIRNDIAEDKLDDETTSDTKAS 446
++ + K D DSD V R + D DE S+ K S
Sbjct: 623 VKRKKLAVDSVFNKFDDEDSDDVPRKRKLVPLD-YGDEDKSNIKGS 667
>ZFIN|ZDB-GENE-030131-5547 [details] [associations]
symbol:rbm25 "RNA binding motif protein 25"
species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0005575
"cellular_component" evidence=ND] InterPro:IPR000504
InterPro:IPR002483 InterPro:IPR012677 Pfam:PF00076 Pfam:PF01480
PROSITE:PS50102 PROSITE:PS51025 SMART:SM00311 SMART:SM00360
ZFIN:ZDB-GENE-030131-5547 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003676 Gene3D:1.20.1390.10
SUPFAM:SSF101233 GeneTree:ENSGT00700000104356 EMBL:AL928824
IPI:IPI00971796 Ensembl:ENSDART00000113929 Uniprot:E7F440
Length = 833
Score = 278 (102.9 bits), Expect = 2.5e-35, Sum P(4) = 2.5e-35
Identities = 71/239 (29%), Positives = 122/239 (51%)
Query: 696 TAVPSVFHVEXXXXXXXXXXMRP---LVPIDYSTEELQAAQPHVSGANPPNLAAAAEFAK 752
TA PSV P ++P + S +E+ + N P + +
Sbjct: 604 TAAPSVSSASGNATPNTPREESPCGIIIPHENSPQEMLLPEE-----NRPKIGLSL---- 654
Query: 753 RISNVNSKEEKSDAERERS--RRLHDRSSQREKDRSDEDNNRTRDEHKEKILDRDRDREH 810
++ + S + S A+R++ + +R E D + +++++ D
Sbjct: 655 KLGSSGSPGQPSVAKRKKLPVESVFNRFDDDEVDEAPRKRKLVPLDYEDEEKAVDGATVA 714
Query: 811 GLDKVKTPDNKKLLDAKQLIDMIPKTKEELFSYEINWAVYDKHELHERMRPWISKKITEF 870
G V T + +K + K LI+ IP K ELF+Y ++W+V D + +R+RPWI+KKI E+
Sbjct: 715 GGKGVNTEEKRKHI--KSLIEKIPTAKPELFNYPLDWSVVDTALMEKRIRPWINKKIVEY 772
Query: 871 LGEEETTLVDYIVSSTQDHVKASQMLELLQTILDDEAEMFVLKMWRMLIFEIKKVETGL 929
+GEEE TLVD++ S H +L+ + +LD+EAE+F++KMWR+LI+E + + GL
Sbjct: 773 IGEEEATLVDFVCSKVMAHSTPQGILDDVAMVLDEEAEVFIVKMWRLLIYETEAKKIGL 831
Score = 192 (72.6 bits), Expect = 2.5e-35, Sum P(4) = 2.5e-35
Identities = 44/119 (36%), Positives = 63/119 (52%)
Query: 217 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRA 276
P T V+VG I+ A + +L CG V SWKR Q S G + FGFCE++ E LRA
Sbjct: 85 PTTTVFVGNISEKASDMLIRQLLAKCGLVLSWKRVQGAS-GKLQAFGFCEYKEPESTLRA 143
Query: 277 LRLLNKFNIDGQELMLKVDQATREYLERYVDXXXXXXXXXXXXQDAGAGKEDESVQSVE 335
LRLL++ + ++L++KVD T+ L+ + D AG+E+E V E
Sbjct: 144 LRLLHELQVGEKKLLVKVDAKTKAQLDEWKAKKKSTSANGNGKAD-DAGEEEEEVLDEE 201
Score = 85 (35.0 bits), Expect = 6.9e-15, Sum P(3) = 6.9e-15
Identities = 19/72 (26%), Positives = 37/72 (51%)
Query: 768 RERSRRLHDRSSQREKDRSD-EDNNRTRDEHKEKILDRDRDREHGLDKVKTPDNKKLLDA 826
R+ ++L + +REK+R + E + RD+ +E+ R RDR G + + ++ D+
Sbjct: 269 RDTHKKLEEEKGKREKERQELERERKERDKERERER-RSRDRSEGRSRSRRRQSQSRADS 327
Query: 827 KQLIDMIPKTKE 838
+ +D KE
Sbjct: 328 QSFLDSAKLQKE 339
Score = 77 (32.2 bits), Expect = 4.5e-14, Sum P(3) = 4.5e-14
Identities = 18/65 (27%), Positives = 28/65 (43%)
Query: 752 KRISNVNSKEEKSDAERERSRRLHDRSSQREKDRSDEDNNRTRDEHKEKILDRDRDREHG 811
K++ K EK E ER R+ D+ +RE+ D R+R ++ D +
Sbjct: 273 KKLEEEKGKREKERQELERERKERDKERERERRSRDRSEGRSRSRRRQS--QSRADSQSF 330
Query: 812 LDKVK 816
LD K
Sbjct: 331 LDSAK 335
Score = 61 (26.5 bits), Expect = 1.9e-12, Sum P(3) = 1.9e-12
Identities = 22/76 (28%), Positives = 34/76 (44%)
Query: 747 AAEFAKRISNVNSKEEKSDAERERSRR-LHDRSSQREKD---RSDEDNNRTRDEHKEKIL 802
A +++K I + + E +R + L D R+ R R RD KE L
Sbjct: 419 ARDYSKEIEREEERRREMAKEGKRLKEFLEDYDDDRDDPKYYRGSALQKRLRDREKEIEL 478
Query: 803 D-RDRDRE-HGLDKVK 816
D RDR RE L++++
Sbjct: 479 DERDRKREKEELEEIR 494
Score = 55 (24.4 bits), Expect = 7.7e-12, Sum P(3) = 7.7e-12
Identities = 21/72 (29%), Positives = 30/72 (41%)
Query: 760 KEEKSDAERERSRRLHDRSSQREKD--RSDEDNNRTRD-----------EHKEKILDRDR 806
K EK + E R R L + + + R +E+ R R EHK +RDR
Sbjct: 484 KREKEELEEIRQRLLAEGHPDPDAELRRMEEEAERLRQPPVKPEPEEEREHKPSREERDR 543
Query: 807 DREHGLDKVKTP 818
+R D+ K P
Sbjct: 544 ERGRDRDRRKAP 555
Score = 54 (24.1 bits), Expect = 1.1e-11, Sum P(4) = 1.1e-11
Identities = 17/54 (31%), Positives = 21/54 (38%)
Query: 690 VGSGKRTAVPSVFHVEXXXXXXXXXXMRPLVPIDYSTEELQAAQPHVSGANPPN 743
V K+ V SVF+ R LVP+DY EE V+G N
Sbjct: 667 VAKRKKLPVESVFNRFDDDEVDEAPRKRKLVPLDYEDEEKAVDGATVAGGKGVN 720
Score = 51 (23.0 bits), Expect = 2.0e-11, Sum P(3) = 2.0e-11
Identities = 16/61 (26%), Positives = 29/61 (47%)
Query: 762 EKSDAERERSRRLHDRSSQREKDRSDEDNNRTRDE-HKEKILDRDRDREHGLDKVKTPDN 820
+K +RE+ L +R +REK+ +E R E H + + R E ++++ P
Sbjct: 466 QKRLRDREKEIELDERDRKREKEELEEIRQRLLAEGHPDPDAELRRMEEEA-ERLRQPPV 524
Query: 821 K 821
K
Sbjct: 525 K 525
Score = 51 (23.0 bits), Expect = 2.0e-11, Sum P(3) = 2.0e-11
Identities = 21/92 (22%), Positives = 39/92 (42%)
Query: 740 NPPNLAAAAEFAKRISN--VNSKEEKSDAERERSRRLHDRSSQR---EKDRSDED---NN 791
+P A AA F + S K++K D E + R +R EK+ + ++ N
Sbjct: 352 SPDRPALAAVFFREQSRDRERDKDKKRDREEDEEEAYERRKLERKLREKEAAYQERLKNW 411
Query: 792 RTRDEHKEKILDRDRDREHGLDKVKTPDNKKL 823
R+ K + ++ +RE + + K+L
Sbjct: 412 ELRERKKARDYSKEIEREEERRREMAKEGKRL 443
Score = 50 (22.7 bits), Expect = 2.5e-11, Sum P(3) = 2.5e-11
Identities = 17/68 (25%), Positives = 31/68 (45%)
Query: 759 SKEEKSDAERERSRRLHDRSSQREKDRSDEDNNRTRDEHKEKILDRD----RDREHGLDK 814
S E + ++ + S R R +REK D+ N ++ K ++ R+ RD L++
Sbjct: 221 SSELNAQSQDDESSR---RKKKREKKDEDDINAMEMEDDKRDLISREINKFRDTHKKLEE 277
Query: 815 VKTPDNKK 822
K K+
Sbjct: 278 EKGKREKE 285
Score = 50 (22.7 bits), Expect = 2.5e-11, Sum P(3) = 2.5e-11
Identities = 17/82 (20%), Positives = 41/82 (50%)
Query: 777 RSSQREKDRSDEDNNRTRDEHKEKILDRDRDREHGLDKVKTPDNKKLLDAKQLIDMIPKT 836
RS+ +K RS + +E+ DR+RD++ D+ + D ++ + ++L + +
Sbjct: 343 RSNFVKKPRSPDRPALAAVFFREQSRDRERDKDKKRDREE--DEEEAYERRKLERKL-RE 399
Query: 837 KEELFSYEI-NWAVYDKHELHE 857
KE + + NW + ++ + +
Sbjct: 400 KEAAYQERLKNWELRERKKARD 421
Score = 49 (22.3 bits), Expect = 3.1e-11, Sum P(3) = 3.1e-11
Identities = 13/45 (28%), Positives = 23/45 (51%)
Query: 761 EEKSDAERERSRRLHDRSSQREKDRSDEDNNRTRD-EHKEKILDR 804
+++ D + R L R REK+ ++ +R R+ E E+I R
Sbjct: 452 DDRDDPKYYRGSALQKRLRDREKEIELDERDRKREKEELEEIRQR 496
Score = 42 (19.8 bits), Expect = 2.5e-35, Sum P(4) = 2.5e-35
Identities = 14/42 (33%), Positives = 16/42 (38%)
Query: 118 PPMMQYPGVPGQPPNPALRPYAPIPNGYGAVPAPASGLPRYP 159
PP + P + G P P P P P G P G P P
Sbjct: 4 PPHLNRPQI-GIPTLP---PGIPPPQFAGFPPTMPPGTPMIP 41
Score = 41 (19.5 bits), Expect = 2.0e-10, Sum P(3) = 2.0e-10
Identities = 14/54 (25%), Positives = 23/54 (42%)
Query: 327 EDESVQSVEKNEPTKSPENLKDNETGNKESHDPTNFGVVTEEDRKADQEALEKL 380
+D+ V + P + +D E + GV TEE RK + +EK+
Sbjct: 683 DDDEVDEAPRKRKLV-PLDYEDEEKAVDGATVAGGKGVNTEEKRKHIKSLIEKI 735
Score = 39 (18.8 bits), Expect = 2.5e-35, Sum P(4) = 2.5e-35
Identities = 7/14 (50%), Positives = 11/14 (78%)
Query: 367 EEDRKADQEALEKL 380
E DRK ++E LE++
Sbjct: 480 ERDRKREKEELEEI 493
>WB|WBGene00012245 [details] [associations]
symbol:W04D2.6 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0006397 "mRNA
processing" evidence=IEA] [GO:0040010 "positive regulation of
growth rate" evidence=IMP] [GO:0040007 "growth" evidence=IMP]
[GO:0002119 "nematode larval development" evidence=IMP] [GO:0018991
"oviposition" evidence=IMP] [GO:0040011 "locomotion" evidence=IMP]
[GO:0009792 "embryo development ending in birth or egg hatching"
evidence=IMP] [GO:0048477 "oogenesis" evidence=IMP] [GO:0002009
"morphogenesis of an epithelium" evidence=IMP] InterPro:IPR000504
InterPro:IPR002483 InterPro:IPR012677 Pfam:PF00076 Pfam:PF01480
PROSITE:PS50102 PROSITE:PS51025 SMART:SM00311 SMART:SM00360
GO:GO:0009792 GO:GO:0002009 GO:GO:0040007 GO:GO:0018991
GO:GO:0040010 GO:GO:0002119 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0040011 GO:GO:0048477 GO:GO:0003676
Gene3D:1.20.1390.10 EMBL:Z75552 SUPFAM:SSF101233
GeneTree:ENSGT00700000104356 EMBL:Z75551 GeneID:259655
KEGG:cel:CELE_W04D2.6 CTD:259655 RefSeq:NP_001256427.1
ProteinModelPortal:H2L2D0 SMR:H2L2D0 EnsemblMetazoa:W04D2.6c.1
EnsemblMetazoa:W04D2.6c.2 WormBase:W04D2.6c OMA:VENDFMM
Uniprot:H2L2D0
Length = 707
Score = 258 (95.9 bits), Expect = 4.0e-35, Sum P(2) = 4.0e-35
Identities = 50/137 (36%), Positives = 86/137 (62%)
Query: 786 SDEDNNRTRDEH-KEKILDRDRDREHGLDKVKTPDNKKLLDAKQLIDMIPKTKEELFSYE 844
+D+D + D H K+K+ + RE + + + ++L KQ+I IP TK+ELF +
Sbjct: 567 NDDDED---DVHSKKKLKPFEITREERMQVMSAEEKREL--TKQIIKTIPATKDELFVHR 621
Query: 845 INWAVYDKHELHERMRPWISKKITEFLGEEETTLVDYIVSSTQDHVKASQMLELLQTILD 904
I W D +++R+RPW++KK+T+FLGEE+ + D+I + ++L+ + I+D
Sbjct: 622 IEWDQLDGKWMNDRIRPWVAKKVTQFLGEEDKSFCDFICDQIEKQATPQEILKDVAVIID 681
Query: 905 DEAEMFVLKMWRMLIFE 921
++AE FV+KMWR+LI+E
Sbjct: 682 EDAEQFVIKMWRLLIYE 698
Score = 205 (77.2 bits), Expect = 4.0e-35, Sum P(2) = 4.0e-35
Identities = 66/254 (25%), Positives = 114/254 (44%)
Query: 215 EKPQTK-VYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGV 273
+KP + V+VG I+ +F+ +L CG V SWKR + SNG +GFGFC F EG
Sbjct: 42 QKPDSSPVFVGNISDKCSDEFIRKILNECGNVASWKRIK-GSNGKLQGFGFCHFTDLEGT 100
Query: 274 LRALRLLNKFNIDGQELMLKVDQATREYLERYV--DXXXXXXXXXXXXQDAGAGKEDESV 331
LRALR+L++F++ ++L +K D+ R+ L + + D ED+
Sbjct: 101 LRALRILHEFHLGDKKLTVKPDEKVRDDLRKNAIENRKRQGKKELKLKHDELPADEDD-- 158
Query: 332 QSVEKNEPTKSPENLKDNETGNKESHDPTNFGVVTEEDRKAD--QEALEKLTCMVEERLK 389
++K+E + + L ET +KE T G +++E +K +EK T
Sbjct: 159 --LKKDEEIRL-KILHWMETDHKELFSITEDGELSDETKKVKGHDSKIEKQTVPSSSSNP 215
Query: 390 TNXXXXXXXQTTADGSGISNSELPAKARDGDSDVDMI--RNDIAEDKLDDETTSDTKASD 447
+ S ++R +S R+ + + + +S +++S
Sbjct: 216 KKDEHKRNRNRRSRSRTRSRERTSRRSRSKESPRSKRSRRSRSSSNSSSESDSSSSRSSS 275
Query: 448 HD-RPETSSPDRSR 460
+ R + +P RSR
Sbjct: 276 YSSRSRSRTPQRSR 289
Score = 48 (22.0 bits), Expect = 7.1e-13, Sum P(2) = 7.1e-13
Identities = 20/92 (21%), Positives = 38/92 (41%)
Query: 750 FAKRISNVNSKEEKSDAERERSRRLH-DRSS--QREKDRSD---EDNNRTRDEHKEKILD 803
+ R+ S+E + ER R DR Q+E R ED + +D+ K
Sbjct: 324 YLARLKRWESRERQMSKRYEREERKEKDRKKTLQKEGKRLKLFLEDYDDEKDDPKYYTSS 383
Query: 804 RDRDREHGLDKVKTPDNKKLLDAKQLIDMIPK 835
+ R+ ++ + D K + +Q I+ + +
Sbjct: 384 QFFQRKRDYEREREADQKDRMQEQQEIEELKR 415
Score = 47 (21.6 bits), Expect = 9.0e-13, Sum P(2) = 9.0e-13
Identities = 12/54 (22%), Positives = 25/54 (46%)
Query: 761 EEKSDAERERSRRLHDRSSQREKDRSDEDNNRTRDEHKEKILDRDRDREHGLDK 814
+EK D + S + R E++R + +R +++ + + L R E D+
Sbjct: 372 DEKDDPKYYTSSQFFQRKRDYEREREADQKDRMQEQQEIEELKRQIMEEAANDE 425
Score = 47 (21.6 bits), Expect = 9.0e-13, Sum P(2) = 9.0e-13
Identities = 22/92 (23%), Positives = 43/92 (46%)
Query: 727 EELQAAQPHVSGANPPNLAAAAEFAKRISNVNSKEE-----KSDAERERSRRLHDRSSQR 781
EEL+ Q AN ++ E KR +EE ++D+ + +S+
Sbjct: 411 EELKR-QIMEEAANDESINIEEEARKRHKLKFQEEEAMRKMRADSGSPNPHQPLGQSANG 469
Query: 782 EKDRSDEDNNRTRDEHKEKILDRDRDREHGLD 813
EK S+E+++ + + K++I +D +E +D
Sbjct: 470 EKSSSEEESDSEKTDVKKEI--KDEIKEEPID 499
Score = 43 (20.2 bits), Expect = 3.5e-18, Sum P(2) = 3.5e-18
Identities = 11/31 (35%), Positives = 15/31 (48%)
Query: 763 KSDAERERSRRLHDRSSQREKDRSDEDNNRT 793
K +RSRR RSS SD ++R+
Sbjct: 245 KESPRSKRSRR--SRSSSNSSSESDSSSSRS 273
Score = 41 (19.5 bits), Expect = 3.8e-12, Sum P(2) = 3.8e-12
Identities = 18/70 (25%), Positives = 32/70 (45%)
Query: 749 EFAKRISNVNSKEE--KSDAERERSRR---LHDRSSQREKDR---SDEDNNRTRDEHKEK 800
+ +KR KE+ K ++E R L D +++ + S + R RD +E+
Sbjct: 337 QMSKRYEREERKEKDRKKTLQKEGKRLKLFLEDYDDEKDDPKYYTSSQFFQRKRDYERER 396
Query: 801 ILD-RDRDRE 809
D +DR +E
Sbjct: 397 EADQKDRMQE 406
>FB|FBgn0028474 [details] [associations]
symbol:CG4119 species:7227 "Drosophila melanogaster"
[GO:0003729 "mRNA binding" evidence=ISS] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000381 "regulation of alternative mRNA splicing,
via spliceosome" evidence=IMP] [GO:0005634 "nucleus" evidence=IC]
[GO:0071011 "precatalytic spliceosome" evidence=IDA] [GO:0000398
"mRNA splicing, via spliceosome" evidence=IC] InterPro:IPR000504
InterPro:IPR002483 InterPro:IPR012677 Pfam:PF00076 Pfam:PF01480
PROSITE:PS50102 PROSITE:PS51025 SMART:SM00311 SMART:SM00360
GO:GO:0000166 EMBL:AE014298 GO:GO:0003729 Gene3D:3.30.70.330
GO:GO:0071011 GO:GO:0000398 Gene3D:1.20.1390.10 GO:GO:0000381
KO:K12822 SUPFAM:SSF101233 GeneTree:ENSGT00700000104356 OMA:VENDFMM
EMBL:AF181653 RefSeq:NP_572242.1 UniGene:Dm.7639 SMR:Q9V3Y5
EnsemblMetazoa:FBtr0070799 GeneID:31481 KEGG:dme:Dmel_CG4119
UCSC:CG4119-RA FlyBase:FBgn0028474 InParanoid:Q9V3Y5
OrthoDB:EOG4WH72B GenomeRNAi:31481 NextBio:773859 Uniprot:Q9V3Y5
Length = 998
Score = 264 (98.0 bits), Expect = 3.6e-31, Sum P(4) = 3.6e-31
Identities = 62/176 (35%), Positives = 97/176 (55%)
Query: 755 SNVNSKEEKSDAERERSRRLHDRSSQREKDRSDEDNNRTRDEHKEKILDRDRDREHGLDK 814
SN + + S H+ +S+ K+ + + D I +D E+G
Sbjct: 829 SNASGGKNNGGGSSSSSNNKHNSNSKHGKNEAAASAGSSADAAAANI-KKD---ENG--- 881
Query: 815 VKTPDNKKLLDAKQLIDMIPKTKEELFSYEINWAVYDKHELHERMRPWISKKITEFLGEE 874
K D K+ K +ID IP KEELF+Y+++ D + ++RPWI+KKI E++GE
Sbjct: 882 AKVYDEKRR-HIKSIIDRIPTQKEELFNYKLDRNEIDSGLMERKIRPWINKKIIEYIGEP 940
Query: 875 ETTLVDYIVSSTQDHVKASQMLELLQTILDDEAEMFVLKMWRMLIFEIKKVETGLA 930
E TLVD+I S +L+ +Q +LD+EAE+FV+KMWR+LI+E+ ++GLA
Sbjct: 941 EPTLVDFICSKVLAGSPPQSILDDVQMVLDEEAEVFVVKMWRLLIYELDAKKSGLA 996
Score = 146 (56.5 bits), Expect = 3.6e-31, Sum P(4) = 3.6e-31
Identities = 32/89 (35%), Positives = 47/89 (52%)
Query: 217 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRA 276
P V+VG I+ + +L CG V +WKR FGFCEF+ +RA
Sbjct: 59 PIITVFVGNISERVPEALLKRILNACGVVINWKRVST--------FGFCEFDGPIAAMRA 110
Query: 277 LRLLNKFNIDGQELMLKVDQATREYLERY 305
+RLL++ IDG++L+ KVD + +E Y
Sbjct: 111 VRLLSEMEIDGKKLVAKVDAKNKVLIEDY 139
Score = 125 (49.1 bits), Expect = 6.6e-15, Sum P(3) = 6.6e-15
Identities = 37/154 (24%), Positives = 76/154 (49%)
Query: 757 VNSKEEKSDAERERSRRLHDRSSQREKDRSDEDNNRTRDEHKEKILDRDRDREHGLDKVK 816
+ KE +SD++ R RR RS RE++R + + RD+ +E+ DR+R+RE ++++
Sbjct: 340 ITQKERRSDSKETRRRRSKSRSKDRERER-ERELRELRDKERERERDRERERERERNEMR 398
Query: 817 TPDNKKLLDAKQLIDMIPKTKEELFS-YEINWAVYD-KHELHERMRPWISKKITEFLGEE 874
+ ++ + ++ + + +E+L W + + EL +R + KK E
Sbjct: 399 ERERNEMREREREREREREREEKLLKPVRDTWREKEMEDELRDRKKA--EKKAREKEIAY 456
Query: 875 ETTLVDYIVSSTQDHVKASQMLELLQTILDDEAE 908
+T L D+ V + K ++ L + + +E E
Sbjct: 457 QTRLTDWEVREKRK-AKENEKYRLKELLRQEERE 489
Score = 77 (32.2 bits), Expect = 4.3e-09, Sum P(2) = 4.3e-09
Identities = 27/106 (25%), Positives = 47/106 (44%)
Query: 725 STEELQAAQPHVSGANPPNLAAAAEFAKRISNV--NSKEEKSDAERERSRRLHDRSSQRE 782
S+ ++ P GA+ + A I SKE S R+ S +Q+E
Sbjct: 285 SSATATSSTPAADGADMSDKTDKESVAVVIKETVKESKESASSTGRKESSSAAIEITQKE 344
Query: 783 KDRSDEDNNRTRDEHKEKILDRDRDREHGLDKVKTPDNKKLLDAKQ 828
+ RSD R R K + DR+R+RE L +++ + ++ D ++
Sbjct: 345 R-RSDSKETRRR-RSKSRSKDRERERERELRELRDKERERERDRER 388
Score = 69 (29.3 bits), Expect = 3.1e-09, Sum P(3) = 3.1e-09
Identities = 44/185 (23%), Positives = 85/185 (45%)
Query: 749 EFAKRISN-VNSKEEKSDAERERSRRLHD--RSSQREKDRSDEDNNRTRDEHK--EK-IL 802
E +R N + +E + + ERER +L R + REK+ DE +R + E K EK I
Sbjct: 396 EMRERERNEMREREREREREREREEKLLKPVRDTWREKEMEDELRDRKKAEKKAREKEIA 455
Query: 803 DRDRDREHGL-DKVKTPDNKKLLDAKQLIDMIPKTKEELFSYEINWAVYDKHELHERMRP 861
+ R + + +K K +N+K +L +++ + + E + + V D + +
Sbjct: 456 YQTRLTDWEVREKRKAKENEKY----RLKELLRQEERETDAKRLKEFVEDYDDERDDSLY 511
Query: 862 WISKKITEFLGEEETTLVDYIVSSTQDHVK-ASQMLELLQTILDDEAEMFVLKMWRMLIF 920
+ +++ + L E V + ++D K A ++ EL E E L+ + +
Sbjct: 512 YRGRELQQRLAER----VREADADSKDREKEAEELAELKSKFFSGEYENPSLEFEKARL- 566
Query: 921 EIKKV 925
EI+K+
Sbjct: 567 EIEKL 571
Score = 54 (24.1 bits), Expect = 3.6e-31, Sum P(4) = 3.6e-31
Identities = 37/146 (25%), Positives = 56/146 (38%)
Query: 323 GAGKEDESVQSVEKNEPTKSPENLKDNETGNKESHDPTNFGVVTEED--RKA--DQEALE 378
G+ ++ + E + EN + E N S + F + EED RK ++ E
Sbjct: 190 GSANRNKKTRREEDIKMKVLSENTLEEEKRNLISSEIGKFRMRAEEDEHRKELEKEKEKE 249
Query: 379 KLTCMVEERLKTNXXXXXXXQTTADGSG----ISNSELPAKARDGDSD-VDMIRNDIAED 433
KL E+ K T+ GS S+S A + +D DM E
Sbjct: 250 KLAASKEKERKKQREMERMSSTSKSGSSSTAAASSSSATATSSTPAADGADMSDKTDKES 309
Query: 434 K--LDDETTSDTK--ASDHDRPETSS 455
+ ET ++K AS R E+SS
Sbjct: 310 VAVVIKETVKESKESASSTGRKESSS 335
Score = 53 (23.7 bits), Expect = 3.6e-31, Sum P(4) = 3.6e-31
Identities = 23/68 (33%), Positives = 29/68 (42%)
Query: 619 VNGSLAEESAVESKGMDVEHDYHDDSIRE----NHMAGDPSSQNGNGDESTNVPIAASDM 674
VN +E+ K V DY DD+I NH A S N S N +++D
Sbjct: 733 VNDDDNDENINPKKRKLVPLDY-DDNISNTTPSNHAASSGSGAANNSSSSNNNNSSSAD- 790
Query: 675 RQSGNVPA 682
RQS V A
Sbjct: 791 RQSSAVSA 798
Score = 50 (22.7 bits), Expect = 7.3e-31, Sum P(4) = 7.3e-31
Identities = 17/56 (30%), Positives = 27/56 (48%)
Query: 717 RPLVPIDYSTEELQAAQPHVSGANPPNLAAAA-EFAKRISNVNSKEEKSDAERERS 771
R LVP+DY ++S P N AA++ A S+ ++ S A+R+ S
Sbjct: 747 RKLVPLDYDD--------NISNTTPSNHAASSGSGAANNSSSSNNNNSSSADRQSS 794
Score = 48 (22.0 bits), Expect = 4.1e-06, Sum P(2) = 4.1e-06
Identities = 13/72 (18%), Positives = 36/72 (50%)
Query: 752 KRISNVNSKEEKSDAERERSRRLHDRSSQREKDRSDEDNNRT---RDEHKEKIL---DRD 805
+R ++ K + E R L + + R++ED +R +++ KEK+ +++
Sbjct: 199 RREEDIKMKVLSENTLEEEKRNLISSEIGKFRMRAEEDEHRKELEKEKEKEKLAASKEKE 258
Query: 806 RDREHGLDKVKT 817
R ++ ++++ +
Sbjct: 259 RKKQREMERMSS 270
Score = 45 (20.9 bits), Expect = 8.0e-07, Sum P(3) = 8.0e-07
Identities = 14/56 (25%), Positives = 25/56 (44%)
Query: 751 AKRISNVNSKEEKSDAERERSRRLHDRSSQREKDRSDEDNNRTRDEHKEKILDRDR 806
A S+V+ +++ + A E R ++ D D D T D+ + I + DR
Sbjct: 586 AAATSSVHQRKQAASAPGEDDEGQKQRQKSQQLDSYDPDMAGTNDD--DSISNDDR 639
Score = 44 (20.5 bits), Expect = 3.8e-30, Sum P(4) = 3.8e-30
Identities = 12/41 (29%), Positives = 18/41 (43%)
Query: 415 KARDGDSDVDMIRNDIAEDKLDDETTSDTKASDHDRPETSS 455
K R +D D+A DD ++D +AS D +S
Sbjct: 610 KQRQKSQQLDSYDPDMAGTNDDDSISNDDRASMADTASNAS 650
Score = 42 (19.8 bits), Expect = 6.1e-30, Sum P(4) = 6.1e-30
Identities = 23/136 (16%), Positives = 48/136 (35%)
Query: 326 KEDESVQSVEKNEPTKSPENLKDNETGNKESHDPTNFGVVTEEDRKADQEALEKLTCMVE 385
+EDE + +EK + + K+ E K+ + T + + A +
Sbjct: 234 EEDEHRKELEKEKEKEKLAASKEKE--RKKQREMERMSS-TSKSGSSSTAAASSSSATAT 290
Query: 386 ERLKTNXXXXXXXQTTADGSGISNSELPAKARDGDSDVDMIRNDIAEDKLDD-ETTSDTK 444
+T + + E ++++ S + A ++ E SD+K
Sbjct: 291 SSTPAADGADMSDKTDKESVAVVIKETVKESKESASSTGRKESSSAAIEITQKERRSDSK 350
Query: 445 ASDHDRPETSSPDRSR 460
+ R ++ S DR R
Sbjct: 351 ETRRRRSKSRSKDRER 366
Score = 41 (19.5 bits), Expect = 6.1e-30, Sum P(4) = 6.1e-30
Identities = 14/59 (23%), Positives = 26/59 (44%)
Query: 621 GSLAEESAVESKGMDVEHDYHDDSIRENHMAGDPSSQNGNGDESTNVPIAASDMRQSGN 679
G+ ++ +E+ G+ V D +D++I P + N +T AAS + N
Sbjct: 718 GNNLKKKKIEATGVFVNDDDNDENINPKKRKLVPLDYDDNISNTTPSNHAASSGSGAAN 776
Score = 39 (18.8 bits), Expect = 0.00012, Sum P(3) = 0.00012
Identities = 8/42 (19%), Positives = 19/42 (45%)
Query: 747 AAEFAKRISNVNSKEEKSDAERERSRRLHDRSSQREKDRSDE 788
++E K E + + E+E+ + S ++E+ + E
Sbjct: 223 SSEIGKFRMRAEEDEHRKELEKEKEKEKLAASKEKERKKQRE 264
Score = 38 (18.4 bits), Expect = 4.0e-06, Sum P(3) = 4.0e-06
Identities = 7/22 (31%), Positives = 13/22 (59%)
Query: 786 SDEDNNRTRDEHKEKILDRDRD 807
+D+DN+ + K K++ D D
Sbjct: 734 NDDDNDENINPKKRKLVPLDYD 755
Score = 37 (18.1 bits), Expect = 5.4e-05, Sum P(2) = 5.4e-05
Identities = 10/45 (22%), Positives = 21/45 (46%)
Query: 749 EFAKRISNVNSKEEKSDAERERSRRLHDRSSQREKDRSDEDNNRT 793
+F R ++E + E+E+ + + +R+K R E + T
Sbjct: 228 KFRMRAEEDEHRKEL-EKEKEKEKLAASKEKERKKQREMERMSST 271
>RGD|1308755 [details] [associations]
symbol:Rbm25 "RNA binding motif protein 25" species:10116
"Rattus norvegicus" [GO:0000381 "regulation of alternative mRNA
splicing, via spliceosome" evidence=IEA] [GO:0003729 "mRNA binding"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0006397
"mRNA processing" evidence=IEA] [GO:0006915 "apoptotic process"
evidence=IEA] [GO:0016607 "nuclear speck" evidence=IEA]
InterPro:IPR002483 Pfam:PF01480 PROSITE:PS51025 SMART:SM00311
RGD:1308755 GO:GO:0006397 Gene3D:1.20.1390.10 SUPFAM:SSF101233
GeneTree:ENSGT00700000104356 IPI:IPI00369616 IntAct:F1LT30
Ensembl:ENSRNOT00000003834 Uniprot:F1LT30
Length = 354
Score = 288 (106.4 bits), Expect = 7.8e-29, Sum P(3) = 7.8e-29
Identities = 57/144 (39%), Positives = 90/144 (62%)
Query: 787 DEDNNRTRDEHKEKILDRDRDREHGLD-KVKTPDNKKLLDAKQLIDMIPKTKEELFSYEI 845
DED++ + K LD D ++ V T + +K + K LI+ IP K ELF+Y +
Sbjct: 211 DEDSDDVPRKRKLVPLDYGEDDKNAAKGTVNTEEKRKHI--KSLIEKIPTAKPELFAYPL 268
Query: 846 NWAVYDKHELHERMRPWISKKITEFLGEEETTLVDYIVSSTQDHVKASQMLELLQTILDD 905
+W++ D + R+RPWI+KKI E++GEEE TLVD++ S H +L+ + +LD+
Sbjct: 269 DWSIVDSILMERRIRPWINKKIIEYIGEEEATLVDFVCSKVMAHSSPQSILDDVAMVLDE 328
Query: 906 EAEMFVLKMWRMLIFEIKKVETGL 929
EAE+F++KMWR+LI+E + + GL
Sbjct: 329 EAEVFIVKMWRLLIYETEAKKIGL 352
Score = 57 (25.1 bits), Expect = 6.3e-28, Sum P(2) = 6.3e-28
Identities = 17/60 (28%), Positives = 30/60 (50%)
Query: 748 AEFAKRISNV--NSKEEKSDAERERSRRLHDRSSQREKDRSDEDNNRTRD-EHKEKILDR 804
A+ AKR+ + +++ D + R L R REK+ ++ +R R+ E E+I R
Sbjct: 1 AKEAKRLKEFLEDYDDDRDDPKYYRGSALQKRLRDREKEMEADERDRKREKEELEEIRQR 60
Score = 45 (20.9 bits), Expect = 7.8e-29, Sum P(3) = 7.8e-29
Identities = 8/38 (21%), Positives = 18/38 (47%)
Query: 763 KSDAERERSRRLHDRSSQREKDRSDEDNNRTRDEHKEK 800
+ +AER R ++ E++ ++ R+E E+
Sbjct: 77 EQEAERRRQPQIKQEPESEEEEEEKQEKEEKREEPVEE 114
Score = 39 (18.8 bits), Expect = 7.8e-29, Sum P(3) = 7.8e-29
Identities = 7/14 (50%), Positives = 11/14 (78%)
Query: 367 EEDRKADQEALEKL 380
E DRK ++E LE++
Sbjct: 44 ERDRKREKEELEEI 57
>DICTYBASE|DDB_G0269926 [details] [associations]
symbol:DDB_G0269926 "splicing factor PWI
domain-containing protein" species:44689 "Dictyostelium discoideum"
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR002483
InterPro:IPR012677 Pfam:PF00076 Pfam:PF01480 PROSITE:PS50102
PROSITE:PS51025 SMART:SM00360 dictyBase:DDB_G0269926
EMBL:AAFI02000005 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0003676 Gene3D:1.20.1390.10 eggNOG:NOG250187 SUPFAM:SSF101233
RefSeq:XP_646409.1 ProteinModelPortal:Q55CS2
EnsemblProtists:DDB0252841 GeneID:8617366 KEGG:ddi:DDB_G0269926
OMA:NEINDFY Uniprot:Q55CS2
Length = 724
Score = 201 (75.8 bits), Expect = 2.4e-27, Sum P(3) = 2.4e-27
Identities = 61/182 (33%), Positives = 88/182 (48%)
Query: 219 TKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALR 278
T Y+GKI + F+ S+L CG V W RA +NG K FG CEFE AEG + ALR
Sbjct: 246 TTAYIGKIPQFVEDSFIRSLLNQCGKVSKWNRAS-DTNGKLKQFGLCEFEHAEGAVTALR 304
Query: 279 LLNKFNID--GQELMLKVDQATREYLERYVDXXXXXXXXXXXX-QDAGAGKEDESVQS-V 334
+LN +D G +L++KVD+ +++ Y+D QD ES+++ V
Sbjct: 305 VLNDLEVDRDGGKLVVKVDKG-QKFFSDYLDKKGGLTDQSSDSPQDIILR---ESIKAMV 360
Query: 335 EKN----EPTKSPENLKDNETGNKESHDPTN---FGVVTEEDRKADQEALEKLTCMVEER 387
EKN K E+ + N+ NK+ D T ++ +E K Q E+ E
Sbjct: 361 EKNFINIYEKKKMESNEINDFYNKDRRDLTKEEKIKIIEKEKEKEKQRHKERELKNKERD 420
Query: 388 LK 389
LK
Sbjct: 421 LK 422
Score = 182 (69.1 bits), Expect = 2.4e-27, Sum P(3) = 2.4e-27
Identities = 40/174 (22%), Positives = 93/174 (53%)
Query: 752 KRISNVNSKEE-KSDAERERSRRLHDRSSQREKDRSDEDNNRTRDEHKEKILDRDRDREH 810
K ++++ +E +S+ E + S ++ + +E + + +++ + + E
Sbjct: 538 KGFNSIDEDDENQSENELQNSLQMSKKKQTFIPLDYNEIDQVLNPQQYQQLQKQQQSTET 597
Query: 811 GLDKVKTPDNKKLLDAKQLIDMIPKTKEELFSYEINWAVYDKHE--LHERMRPWISKKIT 868
TP+N L I +E++F ++I+W DK+ ++E M+ WI+ K+
Sbjct: 598 TTTTTTTPNNNNSNGGIDL-SRISNDREQIFKFKIDWNYVDKNPTIVNESMKAWITTKVI 656
Query: 869 EFLGEEETTLVDYIVSSTQDHVKASQMLELLQTILDDEAEMFVLKMWRMLIFEI 922
EF G +E L+D+I++ + H++ + ++ L+ + ++ A+ FVL++WR+L++ I
Sbjct: 657 EFFGAKEDELIDFILNLLKTHLEPTDIILKLRDVFENNADDFVLQLWRILLYYI 710
Score = 78 (32.5 bits), Expect = 1.2e-16, Sum P(3) = 1.2e-16
Identities = 16/62 (25%), Positives = 36/62 (58%)
Query: 761 EEKSDAERERSRRLHDRSS--QREKDRSDEDNNRTRDEHKEKILDRDRDREHGLDKVKTP 818
+E SD++ + +R+ R + R+K+R D++ +R R+ + L+ R +E L++++
Sbjct: 465 DEYSDSDEKMRKRIRSREAIKYRQKEREDDEKDRQRELAELAELELKRQKEEELNRIQLS 524
Query: 819 DN 820
N
Sbjct: 525 SN 526
Score = 54 (24.1 bits), Expect = 2.4e-27, Sum P(3) = 2.4e-27
Identities = 17/48 (35%), Positives = 21/48 (43%)
Query: 116 MAPPMMQYPGVPGQPPNPALRPYAPIPNGYGAVPAPASG-LPRYPAPY 162
M PP +P PG PP P+ P P G V P G P + P+
Sbjct: 18 MKPPYGGFP--PGGPP-----PFGPFPPGL--VQPPYGGQFPPHHGPF 56
Score = 42 (19.8 bits), Expect = 4.1e-26, Sum P(3) = 4.1e-26
Identities = 10/19 (52%), Positives = 10/19 (52%)
Query: 118 PPMMQYPGVPG----QPPN 132
PP YP VPG Q PN
Sbjct: 117 PPQPHYPMVPGSFINQKPN 135
Score = 41 (19.5 bits), Expect = 5.2e-26, Sum P(3) = 5.2e-26
Identities = 15/44 (34%), Positives = 20/44 (45%)
Query: 118 PPMMQYPGVPGQPPNPALRPYAPIPNGYGAVPAP--ASGLPRYP 159
PP V G PP+ L+ + NGY P P G+P +P
Sbjct: 63 PPNFNGGMVGGIPPH--LQHHN---NGYPIHPTPPMGRGIPMHP 101
Score = 40 (19.1 bits), Expect = 6.6e-26, Sum P(3) = 6.6e-26
Identities = 8/24 (33%), Positives = 10/24 (41%)
Query: 122 QYPGVPGQPPNPALRPYAPIPNGY 145
Q P P QP P Y +P +
Sbjct: 106 QQPPQPPQPTQPPQPHYPMVPGSF 129
>GENEDB_PFALCIPARUM|PFF0505c [details] [associations]
symbol:PFF0505c "hypothetical protein,
conserved" species:5833 "Plasmodium falciparum" [GO:0003723 "RNA
binding" evidence=ISS] InterPro:IPR000504 InterPro:IPR002483
InterPro:IPR012677 Pfam:PF00076 Pfam:PF01480 PROSITE:PS50102
PROSITE:PS51025 SMART:SM00360 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 EMBL:AL844505 RefSeq:XP_966092.1
ProteinModelPortal:C6KSU9 IntAct:C6KSU9
EnsemblProtists:PFF0505c:mRNA GeneID:3885919 KEGG:pfa:PFF0505c
EuPathDB:PlasmoDB:PF3D7_0610200 OMA:INWRERE ProtClustDB:CLSZ2515317
Uniprot:C6KSU9
Length = 960
Score = 203 (76.5 bits), Expect = 2.9e-22, Sum P(2) = 2.9e-22
Identities = 40/156 (25%), Positives = 89/156 (57%)
Query: 776 DRSSQREKDRSDEDNNRTRDEHKEKILDRDRDREHGLDKVKTPDNKKLLDAKQLIDMIPK 835
D+ +Q EK+ +E +T E++ D+ ++ +D ++ ++K++++ +P
Sbjct: 810 DKKNQEEKENKEEQEKKT-----EELKDQQNEKVRVIDIIE--------NSKKILEKVPS 856
Query: 836 TKEELFSYEINWAVYD-KHELHERMRPWISKKITEFLGEEETTLVD----YIVSSTQDHV 890
++E +F++ I W + + K+ + +++PWI KKITE++G +E +++ Y V +
Sbjct: 857 SEEHIFNFPIEWNIPNFKNNISTKLKPWIYKKITEYIGADEKDIIEEISNYFVKQILNET 916
Query: 891 KASQMLELLQTILDDEAEMFVLKMWRMLIFEIKKVE 926
ML + LD + ++F+L M++++IFE KV+
Sbjct: 917 SPKNMLVEAEKFLDSDGKIFILNMYKLIIFEQLKVQ 952
Score = 144 (55.7 bits), Expect = 2.9e-22, Sum P(2) = 2.9e-22
Identities = 52/243 (21%), Positives = 97/243 (39%)
Query: 221 VYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLL 280
+Y+G I + + ++ +L++ G V W+R + PS FGFCEF V + +L
Sbjct: 42 MYIGNIDKYIEDNDMVKMLEIFGNVIKWQRQRNPSTNELMAFGFCEFSDIYEVYLCMNIL 101
Query: 281 NKFNIDGQELMLKVDQATREYLERYVDXXXXXXXXXXXXQDAGAGKEDESVQSVEKNEPT 340
+ + + L + ++ ER VD KE+ + ++ E
Sbjct: 102 DNIKLGDKHLKVNCSDNLKKMFERIVDVMYEKREEI---------KEEHKERDMQYEENE 152
Query: 341 KSPENLKDNETGNKESHDPTNFGVVTEEDRKADQEALEKLTCMVEERLKTNXXXXXXXQT 400
KS EN K E E ++ + EE+ + E L+ L + +E +
Sbjct: 153 KSEENEKSEENEKNEENEKS------EENE--ENEKLKLLNYINKEMATKKMEIMKFIER 204
Query: 401 TADGSGISNSELPAKARDGDSDVDMIRNDIAED-KLDDETTSDTKASDHDRPETSSPDRS 459
N E K ++ D+ +I N+I + +D ++ +DH + D +
Sbjct: 205 V-------NEESDEKKKENDT---IINNEINNNIDTNDHINNNINTNDHINNNIDTNDNT 254
Query: 460 RVH 462
+VH
Sbjct: 255 KVH 257
Score = 66 (28.3 bits), Expect = 8.6e-08, Sum P(2) = 8.6e-08
Identities = 24/102 (23%), Positives = 52/102 (50%)
Query: 744 LAAAAEFAKRISNVNSKEEKSDAERERSRRLHDRSSQREKDRSDEDNNRTRDEHKEKILD 803
L+ + AK I ++ K E + S+R R ++R+K++ ++ ++ DE KE
Sbjct: 472 LSKKKDIAKLIE-IDLKGESDTSAMSNSKRREIRRAKRKKEKELDEQDKL-DEIKEVEEM 529
Query: 804 RDRDREHGLDKVKTPDN-KKLLDAKQLIDMIPKTKEELFSYE 844
+ + ++++K + KK+ + K++ +M K EE+ E
Sbjct: 530 KKMEEMKKMEEMKKMEEMKKMEEIKKMEEM--KKMEEMKKME 569
Score = 52 (23.4 bits), Expect = 1.1e-12, Sum P(2) = 1.1e-12
Identities = 24/128 (18%), Positives = 55/128 (42%)
Query: 320 QDAGAGKEDESVQSVEKNEPTKSPENLKDN---ETGNKESHDPTNFGVVTEEDRKADQEA 376
QD +E+E + KN+ TK N K+N NK ++ ++ E+D+ + +
Sbjct: 648 QDDDYNEEEEKKEVFIKNDKTKYKNNNKNNLLFNCYNKYNNSEYSYNSDEEDDKVSVSKY 707
Query: 377 LEKLTCMVEERLKTNXXXXXXXQTTADG--SGISNSELPAKARDGDSDVDMIRNDIAE-- 432
+ + + K + D ++N+E ++G+ ++ +N +E
Sbjct: 708 IHTSSSEYDSYEKRRKKEEKKKKKDDDNYKRKMTNTEYE-NIKEGEQNIKKKKNFHSEYL 766
Query: 433 DKLDDETT 440
++D++T
Sbjct: 767 QNINDQST 774
Score = 48 (22.0 bits), Expect = 6.0e-06, Sum P(2) = 6.0e-06
Identities = 35/172 (20%), Positives = 71/172 (41%)
Query: 760 KEEKSDAERERSRRLHDRSSQREKDRSDEDNNRTRDEHKEKILDRDRDREHGLDKVKTPD 819
KEEK + + + + +++ E + E N + + + L D+ L+ + T D
Sbjct: 724 KEEKKKKKDDDNYKRKMTNTEYENIKEGEQNIKKKKNFHSEYLQNINDQST-LNILDTND 782
Query: 820 NKKLLDAKQLIDMIPKTKEELFSY-EINWAVYDKHELHERMRPWISKKITEFLGEEETTL 878
L+ K KT + L +++ DK E+ +K TE L +++
Sbjct: 783 EYTYLEEKG-----KKTNKNLKPVSKLDTTYLDKKNQEEKENKEEQEKKTEELKDQQNEK 837
Query: 879 VDYIVSSTQDHVKASQMLELLQTILDDEAEMFVLKM-WRMLIFEIKKVETGL 929
V I D ++ S+ ++L+ + E +F + W + F+ + T L
Sbjct: 838 VRVI-----DIIENSK--KILEKVPSSEEHIFNFPIEWNIPNFK-NNISTKL 881
Score = 47 (21.6 bits), Expect = 7.6e-06, Sum P(2) = 7.6e-06
Identities = 15/63 (23%), Positives = 34/63 (53%)
Query: 752 KRISNVNSKE-EKSDAERERSRRLHDRSSQREKDRSDEDNNRTRD--EHKEKILDR-DRD 807
K +S +++ +K + E + ++ ++ ++ KD+ +E R D E+ +KIL++
Sbjct: 799 KPVSKLDTTYLDKKNQEEKENKEEQEKKTEELKDQQNE-KVRVIDIIENSKKILEKVPSS 857
Query: 808 REH 810
EH
Sbjct: 858 EEH 860
Score = 44 (20.5 bits), Expect = 1.5e-05, Sum P(2) = 1.5e-05
Identities = 7/32 (21%), Positives = 17/32 (53%)
Query: 777 RSSQREKDRSDEDNNRTRDEHKEKILDRDRDR 808
+ +R+K + +D+ +E KE + D+ +
Sbjct: 638 KKKKRDKSYTQDDDYNEEEEKKEVFIKNDKTK 669
Score = 44 (20.5 bits), Expect = 1.5e-05, Sum P(2) = 1.5e-05
Identities = 17/59 (28%), Positives = 28/59 (47%)
Query: 755 SNVNSKEEK-SDAERERSRRLHDRSSQREKDRSDEDNNRTRDEHKEKILDRD---RDRE 809
SN+ K K +D ++E S+ K E + E+KEK L+R+ R++E
Sbjct: 394 SNIEQKTNKQNDNDKEEEEETV-YISKEYKINWRERERLQKTEYKEKDLEREFYKREKE 451
Score = 43 (20.2 bits), Expect = 2.0e-05, Sum P(2) = 2.0e-05
Identities = 17/89 (19%), Positives = 38/89 (42%)
Query: 749 EFAKRISNVNSKEEKSDAERERSRRLHDRSSQREKDRSDEDN-NRTRDEHKEK--ILDRD 805
E K++ + EE E + + + +K +E+N N +DE+ + L++D
Sbjct: 539 EEMKKMEEMKKMEEIKKMEEMKKMEEMKKMEEIKKMEENENNINNRKDEYDKNDYTLEKD 598
Query: 806 -RDREHGLDKVKTPDNKKLLDAKQLIDMI 833
++ + + +N +L + D I
Sbjct: 599 DNNKNSSIVNMHKNNNDNILTSNSGSDDI 627
Score = 41 (19.5 bits), Expect = 1.5e-11, Sum P(2) = 1.5e-11
Identities = 20/97 (20%), Positives = 36/97 (37%)
Query: 349 NETGNKESHDPTNFGVVTEEDRKADQEALEKLTCMVE-ERLKTNXXXXXXXQTTADGSGI 407
NE K D +N G T+ED + + ++ +R TN + +
Sbjct: 284 NENKKKRKKDNSN-GEKTQEDNYYLYDENDPPNVYIKKQRNNTNVYNNNNIYNNNNNNNN 342
Query: 408 SNSELPAKARDGDSDVDMIRNDIAEDKLDDETTSDTK 444
+N+ + ++ + NDI D + T D K
Sbjct: 343 NNNTYSNNINNSNNIICTSSNDIFSISDDADYTVDKK 379
>UNIPROTKB|C6KSU9 [details] [associations]
symbol:PFF0505c "Putative uncharacterized protein"
species:36329 "Plasmodium falciparum 3D7" [GO:0003723 "RNA binding"
evidence=ISS] InterPro:IPR000504 InterPro:IPR002483
InterPro:IPR012677 Pfam:PF00076 Pfam:PF01480 PROSITE:PS50102
PROSITE:PS51025 SMART:SM00360 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 EMBL:AL844505 RefSeq:XP_966092.1
ProteinModelPortal:C6KSU9 IntAct:C6KSU9
EnsemblProtists:PFF0505c:mRNA GeneID:3885919 KEGG:pfa:PFF0505c
EuPathDB:PlasmoDB:PF3D7_0610200 OMA:INWRERE ProtClustDB:CLSZ2515317
Uniprot:C6KSU9
Length = 960
Score = 203 (76.5 bits), Expect = 2.9e-22, Sum P(2) = 2.9e-22
Identities = 40/156 (25%), Positives = 89/156 (57%)
Query: 776 DRSSQREKDRSDEDNNRTRDEHKEKILDRDRDREHGLDKVKTPDNKKLLDAKQLIDMIPK 835
D+ +Q EK+ +E +T E++ D+ ++ +D ++ ++K++++ +P
Sbjct: 810 DKKNQEEKENKEEQEKKT-----EELKDQQNEKVRVIDIIE--------NSKKILEKVPS 856
Query: 836 TKEELFSYEINWAVYD-KHELHERMRPWISKKITEFLGEEETTLVD----YIVSSTQDHV 890
++E +F++ I W + + K+ + +++PWI KKITE++G +E +++ Y V +
Sbjct: 857 SEEHIFNFPIEWNIPNFKNNISTKLKPWIYKKITEYIGADEKDIIEEISNYFVKQILNET 916
Query: 891 KASQMLELLQTILDDEAEMFVLKMWRMLIFEIKKVE 926
ML + LD + ++F+L M++++IFE KV+
Sbjct: 917 SPKNMLVEAEKFLDSDGKIFILNMYKLIIFEQLKVQ 952
Score = 144 (55.7 bits), Expect = 2.9e-22, Sum P(2) = 2.9e-22
Identities = 52/243 (21%), Positives = 97/243 (39%)
Query: 221 VYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLL 280
+Y+G I + + ++ +L++ G V W+R + PS FGFCEF V + +L
Sbjct: 42 MYIGNIDKYIEDNDMVKMLEIFGNVIKWQRQRNPSTNELMAFGFCEFSDIYEVYLCMNIL 101
Query: 281 NKFNIDGQELMLKVDQATREYLERYVDXXXXXXXXXXXXQDAGAGKEDESVQSVEKNEPT 340
+ + + L + ++ ER VD KE+ + ++ E
Sbjct: 102 DNIKLGDKHLKVNCSDNLKKMFERIVDVMYEKREEI---------KEEHKERDMQYEENE 152
Query: 341 KSPENLKDNETGNKESHDPTNFGVVTEEDRKADQEALEKLTCMVEERLKTNXXXXXXXQT 400
KS EN K E E ++ + EE+ + E L+ L + +E +
Sbjct: 153 KSEENEKSEENEKNEENEKS------EENE--ENEKLKLLNYINKEMATKKMEIMKFIER 204
Query: 401 TADGSGISNSELPAKARDGDSDVDMIRNDIAED-KLDDETTSDTKASDHDRPETSSPDRS 459
N E K ++ D+ +I N+I + +D ++ +DH + D +
Sbjct: 205 V-------NEESDEKKKENDT---IINNEINNNIDTNDHINNNINTNDHINNNIDTNDNT 254
Query: 460 RVH 462
+VH
Sbjct: 255 KVH 257
Score = 66 (28.3 bits), Expect = 8.6e-08, Sum P(2) = 8.6e-08
Identities = 24/102 (23%), Positives = 52/102 (50%)
Query: 744 LAAAAEFAKRISNVNSKEEKSDAERERSRRLHDRSSQREKDRSDEDNNRTRDEHKEKILD 803
L+ + AK I ++ K E + S+R R ++R+K++ ++ ++ DE KE
Sbjct: 472 LSKKKDIAKLIE-IDLKGESDTSAMSNSKRREIRRAKRKKEKELDEQDKL-DEIKEVEEM 529
Query: 804 RDRDREHGLDKVKTPDN-KKLLDAKQLIDMIPKTKEELFSYE 844
+ + ++++K + KK+ + K++ +M K EE+ E
Sbjct: 530 KKMEEMKKMEEMKKMEEMKKMEEIKKMEEM--KKMEEMKKME 569
Score = 52 (23.4 bits), Expect = 1.1e-12, Sum P(2) = 1.1e-12
Identities = 24/128 (18%), Positives = 55/128 (42%)
Query: 320 QDAGAGKEDESVQSVEKNEPTKSPENLKDN---ETGNKESHDPTNFGVVTEEDRKADQEA 376
QD +E+E + KN+ TK N K+N NK ++ ++ E+D+ + +
Sbjct: 648 QDDDYNEEEEKKEVFIKNDKTKYKNNNKNNLLFNCYNKYNNSEYSYNSDEEDDKVSVSKY 707
Query: 377 LEKLTCMVEERLKTNXXXXXXXQTTADG--SGISNSELPAKARDGDSDVDMIRNDIAE-- 432
+ + + K + D ++N+E ++G+ ++ +N +E
Sbjct: 708 IHTSSSEYDSYEKRRKKEEKKKKKDDDNYKRKMTNTEYE-NIKEGEQNIKKKKNFHSEYL 766
Query: 433 DKLDDETT 440
++D++T
Sbjct: 767 QNINDQST 774
Score = 48 (22.0 bits), Expect = 6.0e-06, Sum P(2) = 6.0e-06
Identities = 35/172 (20%), Positives = 71/172 (41%)
Query: 760 KEEKSDAERERSRRLHDRSSQREKDRSDEDNNRTRDEHKEKILDRDRDREHGLDKVKTPD 819
KEEK + + + + +++ E + E N + + + L D+ L+ + T D
Sbjct: 724 KEEKKKKKDDDNYKRKMTNTEYENIKEGEQNIKKKKNFHSEYLQNINDQST-LNILDTND 782
Query: 820 NKKLLDAKQLIDMIPKTKEELFSY-EINWAVYDKHELHERMRPWISKKITEFLGEEETTL 878
L+ K KT + L +++ DK E+ +K TE L +++
Sbjct: 783 EYTYLEEKG-----KKTNKNLKPVSKLDTTYLDKKNQEEKENKEEQEKKTEELKDQQNEK 837
Query: 879 VDYIVSSTQDHVKASQMLELLQTILDDEAEMFVLKM-WRMLIFEIKKVETGL 929
V I D ++ S+ ++L+ + E +F + W + F+ + T L
Sbjct: 838 VRVI-----DIIENSK--KILEKVPSSEEHIFNFPIEWNIPNFK-NNISTKL 881
Score = 47 (21.6 bits), Expect = 7.6e-06, Sum P(2) = 7.6e-06
Identities = 15/63 (23%), Positives = 34/63 (53%)
Query: 752 KRISNVNSKE-EKSDAERERSRRLHDRSSQREKDRSDEDNNRTRD--EHKEKILDR-DRD 807
K +S +++ +K + E + ++ ++ ++ KD+ +E R D E+ +KIL++
Sbjct: 799 KPVSKLDTTYLDKKNQEEKENKEEQEKKTEELKDQQNE-KVRVIDIIENSKKILEKVPSS 857
Query: 808 REH 810
EH
Sbjct: 858 EEH 860
Score = 44 (20.5 bits), Expect = 1.5e-05, Sum P(2) = 1.5e-05
Identities = 7/32 (21%), Positives = 17/32 (53%)
Query: 777 RSSQREKDRSDEDNNRTRDEHKEKILDRDRDR 808
+ +R+K + +D+ +E KE + D+ +
Sbjct: 638 KKKKRDKSYTQDDDYNEEEEKKEVFIKNDKTK 669
Score = 44 (20.5 bits), Expect = 1.5e-05, Sum P(2) = 1.5e-05
Identities = 17/59 (28%), Positives = 28/59 (47%)
Query: 755 SNVNSKEEK-SDAERERSRRLHDRSSQREKDRSDEDNNRTRDEHKEKILDRD---RDRE 809
SN+ K K +D ++E S+ K E + E+KEK L+R+ R++E
Sbjct: 394 SNIEQKTNKQNDNDKEEEEETV-YISKEYKINWRERERLQKTEYKEKDLEREFYKREKE 451
Score = 43 (20.2 bits), Expect = 2.0e-05, Sum P(2) = 2.0e-05
Identities = 17/89 (19%), Positives = 38/89 (42%)
Query: 749 EFAKRISNVNSKEEKSDAERERSRRLHDRSSQREKDRSDEDN-NRTRDEHKEK--ILDRD 805
E K++ + EE E + + + +K +E+N N +DE+ + L++D
Sbjct: 539 EEMKKMEEMKKMEEIKKMEEMKKMEEMKKMEEIKKMEENENNINNRKDEYDKNDYTLEKD 598
Query: 806 -RDREHGLDKVKTPDNKKLLDAKQLIDMI 833
++ + + +N +L + D I
Sbjct: 599 DNNKNSSIVNMHKNNNDNILTSNSGSDDI 627
Score = 41 (19.5 bits), Expect = 1.5e-11, Sum P(2) = 1.5e-11
Identities = 20/97 (20%), Positives = 36/97 (37%)
Query: 349 NETGNKESHDPTNFGVVTEEDRKADQEALEKLTCMVE-ERLKTNXXXXXXXQTTADGSGI 407
NE K D +N G T+ED + + ++ +R TN + +
Sbjct: 284 NENKKKRKKDNSN-GEKTQEDNYYLYDENDPPNVYIKKQRNNTNVYNNNNIYNNNNNNNN 342
Query: 408 SNSELPAKARDGDSDVDMIRNDIAEDKLDDETTSDTK 444
+N+ + ++ + NDI D + T D K
Sbjct: 343 NNNTYSNNINNSNNIICTSSNDIFSISDDADYTVDKK 379
>UNIPROTKB|I3LLA0 [details] [associations]
symbol:RBM25 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0016607 "nuclear speck" evidence=IEA] [GO:0006915
"apoptotic process" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0003729 "mRNA binding" evidence=IEA] [GO:0000381
"regulation of alternative mRNA splicing, via spliceosome"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005737 GO:GO:0006915 GO:GO:0000166
GO:GO:0016607 GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0000381
GeneTree:ENSGT00700000104356 EMBL:CU633699
Ensembl:ENSSSCT00000032106 Uniprot:I3LLA0
Length = 513
Score = 180 (68.4 bits), Expect = 2.7e-20, Sum P(3) = 2.7e-20
Identities = 38/89 (42%), Positives = 53/89 (59%)
Query: 217 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRA 276
P T V+VG I+ A + +L CG V SWKR Q S G + FGFCE++ E LRA
Sbjct: 85 PTTTVFVGNISEKASDMLIRQLLAKCGLVLSWKRVQGAS-GKLQAFGFCEYKEPESTLRA 143
Query: 277 LRLLNKFNIDGQELMLKVDQATREYLERY 305
LRLL+ I ++L++KVD T+ L+ +
Sbjct: 144 LRLLHDLQIGEKKLLVKVDAKTKAQLDEW 172
Score = 125 (49.1 bits), Expect = 2.7e-20, Sum P(3) = 2.7e-20
Identities = 29/114 (25%), Positives = 58/114 (50%)
Query: 718 PLVPIDYST-EELQAAQPHVSGAN--PPNLAAAAEFAKRISNVNSKEEKSDAERERSRRL 774
PL+P T E++ A + + ++ + K++ K+EK E E+ RR
Sbjct: 252 PLIPYPLITKEDINAIEMEEDKRDLISREISKFRDTHKKLEEEKGKKEKERQEIEKERRE 311
Query: 775 HDRSSQREKDRSDEDNNRTRDEHKEKILDRDRDREHGLDKVKTPDNKKLLDAKQ 828
+R +RE++R + + R R+ +EK +R+R+RE D+ +T + + D ++
Sbjct: 312 RERERERERERREREREREREREREKEKERERERERDRDRDRTKERDRDRDRER 365
Score = 115 (45.5 bits), Expect = 2.9e-19, Sum P(3) = 2.9e-19
Identities = 25/70 (35%), Positives = 40/70 (57%)
Query: 760 KEEKSDAERERSRRLHDRSSQREKDRSDE-------DNNRTRDEHKEKILDRDRDREHGL 812
+E + + ERER RR +R +RE++R E + +R RD KE+ DRDR+R+
Sbjct: 310 RERERERERERERREREREREREREREKEKERERERERDRDRDRTKERDRDRDRERDRDR 369
Query: 813 DKVKTPDNKK 822
D+ ++ D K
Sbjct: 370 DRERSSDRNK 379
Score = 113 (44.8 bits), Expect = 4.6e-19, Sum P(3) = 4.6e-19
Identities = 36/127 (28%), Positives = 67/127 (52%)
Query: 759 SKEEKSDAERERSR-RLHDRSSQREKDRS-DEDNNRTRDEHKEKILDRDRDREHGLDKVK 816
+KE D +RER R R +RSS R KDRS + +R R+ +E+ +R+R+RE ++ +
Sbjct: 354 TKERDRDRDRERDRDRDRERSSDRNKDRSRSREKSRDRERERERERERERERERERERER 413
Query: 817 TPDNKKLLDAKQLIDMI-PKTKEELFSYE---INWAVYDKHELH-ERMRPWI---SKKIT 868
+ ++ + ++ D + ++E +YE + + +K + ER++ W KK
Sbjct: 414 EREREREREREREKDKKRDREEDEEDAYERRKLERKLREKEAAYQERLKNWEIRERKKTR 473
Query: 869 EFLGEEE 875
E+ E E
Sbjct: 474 EYEKEAE 480
Score = 111 (44.1 bits), Expect = 7.4e-19, Sum P(3) = 7.4e-19
Identities = 38/122 (31%), Positives = 64/122 (52%)
Query: 759 SKEEKSDAERERSR-RLHDRSSQREKDRSDEDNNRTRDEHKEKILDRDRDREHGLDKVKT 817
S+E+ D ERER R R +R +RE++R + + R R+ +E+ D+ RDRE D+
Sbjct: 384 SREKSRDRERERERERERERERERERER-EREREREREREREREKDKKRDREE--DEEDA 440
Query: 818 PDNKKLLDAKQLIDMIPKTKEELFSYEIN----WAVYDKH-ELHERMRPWISK---KITE 869
+ +KL ++L + +E L ++EI Y+K E E R ++K ++ E
Sbjct: 441 YERRKL--ERKLREKEAAYQERLKNWEIRERKKTREYEKEAEREEERRREMAKEAKRLKE 498
Query: 870 FL 871
FL
Sbjct: 499 FL 500
Score = 109 (43.4 bits), Expect = 1.2e-18, Sum P(3) = 1.2e-18
Identities = 23/64 (35%), Positives = 37/64 (57%)
Query: 760 KEEKSDAERERSR-RLHDRSSQREKDRSDEDNNRTRDEHKEKILDRDRDREHGLDKVKTP 818
+E + + ERER R R DR +E+DR D D R RD +E+ DR++DR +K +
Sbjct: 333 REREKEKERERERERDRDRDRTKERDR-DRDRERDRDRDRERSSDRNKDRSRSREKSRDR 391
Query: 819 DNKK 822
+ ++
Sbjct: 392 ERER 395
Score = 100 (40.3 bits), Expect = 1.0e-17, Sum P(3) = 1.0e-17
Identities = 21/67 (31%), Positives = 40/67 (59%)
Query: 760 KEEKSDAERERSR-RLHDRSSQREKDRSDE---DNNRTRDEHKEKILDRDRDREHGLDKV 815
+E + D +R+R++ R DR +R++DR E D N+ R +EK DR+R+RE ++
Sbjct: 343 RERERDRDRDRTKERDRDRDRERDRDRDRERSSDRNKDRSRSREKSRDRERERERERERE 402
Query: 816 KTPDNKK 822
+ + ++
Sbjct: 403 RERERER 409
Score = 58 (25.5 bits), Expect = 2.7e-20, Sum P(3) = 2.7e-20
Identities = 16/39 (41%), Positives = 20/39 (51%)
Query: 124 PGVPGQPPN-PALRPYAPIPNGYGAVPAPASGLPRYPAP 161
PG+P PP P P P+P G +P P S + PAP
Sbjct: 19 PGIP--PPQFPGFPP--PVPPGTPMIPVPMSIMA--PAP 51
Score = 58 (25.5 bits), Expect = 2.7e-20, Sum P(3) = 2.7e-20
Identities = 16/43 (37%), Positives = 18/43 (41%)
Query: 121 MQYPGVPGQPPN--PALRPYAPIPNGYGAVPAPASGLPRYPAP 161
M +P +PP PAL P P P G P G P P P
Sbjct: 1 MSFPPHLNRPPMGIPALPPGIPPPQFPGFPPPVPPGTPMIPVP 43
Score = 56 (24.8 bits), Expect = 4.4e-20, Sum P(3) = 4.4e-20
Identities = 14/31 (45%), Positives = 15/31 (48%)
Query: 60 PA-PASLPPAPVQSFVPPTQP-ISYRPVPMS 88
PA P +PP F PP P PVPMS
Sbjct: 15 PALPPGIPPPQFPGFPPPVPPGTPMIPVPMS 45
Score = 51 (23.0 bits), Expect = 7.7e-14, Sum P(4) = 7.7e-14
Identities = 14/43 (32%), Positives = 25/43 (58%)
Query: 768 RERSR-RLHDRSSQREKDRSDEDNNRTRDEHKEKILDRDRDRE 809
RER + R +++ ++RE++R E + KE + D D DR+
Sbjct: 467 RERKKTREYEKEAEREEERRREMAKEAK-RLKEFLEDYDDDRD 508
Score = 48 (22.0 bits), Expect = 7.7e-14, Sum P(4) = 7.7e-14
Identities = 22/137 (16%), Positives = 52/137 (37%)
Query: 325 GKEDESVQSVEKNEPTKSPENLKDNETGNKESHDPTNFGVVTEEDRKADQEA-LEKLTCM 383
GK+++ Q +EK + E ++ E +E E++R+ ++E ++
Sbjct: 296 GKKEKERQEIEKERRERERERERERERREREREREREREREKEKERERERERDRDRDRTK 355
Query: 384 VEERLKTNXXXXXXXQTTADGSGISNSELPAKARDGDSDVDMIRNDIAEDKLDDETTSDT 443
+R + + + S K+RD + + + R E + + E +
Sbjct: 356 ERDRDRDRERDRDRDRERSSDRNKDRSRSREKSRDRERERERERERERERERERERERE- 414
Query: 444 KASDHDRPETSSPDRSR 460
+ + +R D+ R
Sbjct: 415 REREREREREREKDKKR 431
Score = 47 (21.6 bits), Expect = 1.9e-13, Sum P(4) = 1.9e-13
Identities = 12/40 (30%), Positives = 19/40 (47%)
Query: 759 SKEEKSDAERERSRRLHDRSSQREKDRSDEDNNRTRDEHK 798
++E + +AERE RR + ED + RD+ K
Sbjct: 472 TREYEKEAEREEERRREMAKEAKRLKEFLEDYDDDRDDPK 511
>ASPGD|ASPL0000002523 [details] [associations]
symbol:AN6036 species:162425 "Emericella nidulans"
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0005685 "U1 snRNP" evidence=IEA]
[GO:0005829 "cytosol" evidence=IEA] InterPro:IPR002483
InterPro:IPR012677 Pfam:PF01480 PROSITE:PS51025 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 EMBL:BN001301 Gene3D:1.20.1390.10
OMA:NINFSAP EnsemblFungi:CADANIAT00006982 HOGENOM:HOG000162938
Uniprot:C8V309
Length = 762
Score = 203 (76.5 bits), Expect = 1.0e-19, Sum P(5) = 1.0e-19
Identities = 39/105 (37%), Positives = 65/105 (61%)
Query: 826 AKQLIDMIPKTKEELFSYEINWAVYDKHELHERMRPWISKKITEFLGEEETTLVDYIVSS 885
A+QL IP K+ L+ +EI W D+ + E+++P++ KKI E+LG +E LVD +
Sbjct: 657 ARQLAAEIPTDKDGLWKWEIKWEFVDESVVSEQLKPFVEKKIVEYLGVQEQMLVDVVEEH 716
Query: 886 TQDHVKASQMLELLQTILDDEAEMFVLKMWRMLIFEIKKVETGLA 930
+ +++E L+ LD+EAE+ V K+WRM+IF + + GL+
Sbjct: 717 VRKRGNPQELVEQLEEALDEEAEVLVRKLWRMIIFFSESEKRGLS 761
Score = 72 (30.4 bits), Expect = 1.0e-19, Sum P(5) = 1.0e-19
Identities = 19/66 (28%), Positives = 32/66 (48%)
Query: 221 VYVGKIAPTADSDF-VLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRL 279
++VG I D V +L+ G ++ W RA ++ P FGF E+E E + A+ +
Sbjct: 137 IFVGGITEGLGGDEGVERILRSAGNLRRWIRAT-DADDKPCKFGFAEYEDPESLGTAVEV 195
Query: 280 LNKFNI 285
L +
Sbjct: 196 LKDVQV 201
Score = 67 (28.6 bits), Expect = 1.0e-19, Sum P(5) = 1.0e-19
Identities = 39/167 (23%), Positives = 60/167 (35%)
Query: 646 RENHMAGDPSSQNGNGDESTNVPIAASDMRQSGNVPARKLGFGLVGSGKRTAVPSVFHVE 705
R N +A P+S N R N P+ GFG+ +P +
Sbjct: 364 RVNRLASPPASAPSGPAAGANGIPLGGRDRGMPNAPSGPKGFGV-------QIPKDYQKG 416
Query: 706 XXXXXXXXXXMRPLVPIDYSTEELQAAQPHVSGANPPNLAAAAEFAKRISNVNSKEEKSD 765
P V ID+ E A + AE K+ + +E+
Sbjct: 417 VSFVNGGSVNGAPTVYIDHEDENTDADDEELERRRQAK--REAELEKQFLD----QERRW 470
Query: 766 AERERSRRLHDRSSQREKDRSDEDNNRT---RDEHKEKILDRDRDRE 809
RERSR + +REK R E+ +R RDE +++ + + D E
Sbjct: 471 LNRERSRTA---ALEREKKRDQEEEDRAQEVRDEADKRLSEWNDDVE 514
Score = 64 (27.6 bits), Expect = 2.0e-19, Sum P(5) = 2.0e-19
Identities = 21/89 (23%), Positives = 43/89 (48%)
Query: 757 VNSKEEKSDAERER--SRRLHDRSSQREKDRSDEDNN-----RTRDEHKEKILDRDRDRE 809
++ ++E +DA+ E RR R ++ EK D++ R+R E+ RD++ E
Sbjct: 433 IDHEDENTDADDEELERRRQAKREAELEKQFLDQERRWLNRERSRTAALEREKKRDQEEE 492
Query: 810 HGLDKVKTPDNKKLLDAKQLIDMIPKTKE 838
+V+ +K+L + ++ K+ E
Sbjct: 493 DRAQEVRDEADKRLSEWNDDVEASRKSSE 521
Score = 54 (24.1 bits), Expect = 1.0e-19, Sum P(5) = 1.0e-19
Identities = 15/40 (37%), Positives = 19/40 (47%)
Query: 122 QYPGVPGQPPNPALRPYAPIPNGYGAVPAPASGLPRYPAP 161
Q PG+ G+PP+ + P AP P G P P P P
Sbjct: 6 QPPGMYGRPPDYGVYPGAP-P---GMAPPPGLAAPGTAPP 41
Score = 51 (23.0 bits), Expect = 2.0e-19, Sum P(5) = 2.0e-19
Identities = 11/20 (55%), Positives = 11/20 (55%)
Query: 5 PASPATIDPNFKQPESNNPN 24
P PA PNF QP N PN
Sbjct: 51 PGRPAGFPPNF-QPPPNMPN 69
Score = 45 (20.9 bits), Expect = 1.0e-19, Sum P(5) = 1.0e-19
Identities = 23/90 (25%), Positives = 37/90 (41%)
Query: 285 IDGQELMLKVDQATREYLERYVDXXXXXXXXXXXXQDAGAGKEDESV--QSVEKNEPTKS 342
++ L++ VD+++ YLE+Y + A K E V PT+
Sbjct: 219 VEKSTLLVVVDESSLTYLEQYEASRGSQDPAERQSKLDAAKKALEGVLHDLFHPTSPTQR 278
Query: 343 PENL----KDNETGNK--ESHDPTNFGVVT 366
EN ++ +T K E D T+ VVT
Sbjct: 279 -ENASAVDREGDTSMKDAEGQDGTSAEVVT 307
Score = 45 (20.9 bits), Expect = 1.6e-17, Sum P(5) = 1.6e-17
Identities = 18/65 (27%), Positives = 32/65 (49%)
Query: 744 LAAAAEFAKRISNVNSKEEKSDAERERSRRLHDRSSQREKDRSDEDNNRTRD-EHKEKIL 802
L + A F R +++ + ++ ERER+R + QRE+ R D+ R E E +
Sbjct: 530 LRSRAAFRAREISMDEADRAAE-ERERARSIQ----QREQARGMADDFLARQAEELETRM 584
Query: 803 DRDRD 807
+ R+
Sbjct: 585 EAPRE 589
Score = 41 (19.5 bits), Expect = 2.0e-18, Sum P(5) = 2.0e-18
Identities = 10/27 (37%), Positives = 12/27 (44%)
Query: 1 MADSP--ASPATIDPNFKQPESNNPNR 25
MA P A+P T P +Q P R
Sbjct: 27 MAPPPGLAAPGTAPPGLQQANMQQPGR 53
Score = 40 (19.1 bits), Expect = 6.4e-19, Sum P(5) = 6.4e-19
Identities = 17/50 (34%), Positives = 23/50 (46%)
Query: 636 VEHD-YHDDSI--RENHMA----GDPSSQNGNGDESTN-----VPIAASD 673
V HD +H S REN A GD S ++ G + T+ +PI D
Sbjct: 265 VLHDLFHPTSPTQRENASAVDREGDTSMKDAEGQDGTSAEVVTIPITVED 314
Score = 40 (19.1 bits), Expect = 4.9e-17, Sum P(5) = 4.9e-17
Identities = 14/57 (24%), Positives = 27/57 (47%)
Query: 768 RERSRRLHDRSSQ-REKDRSDEDNNRTRDEHKEKILDRDRDREHGLDKVKTPDNKKL 823
RE S DR+++ RE+ RS + + R + + + + E ++ + P KL
Sbjct: 539 REISMDEADRAAEERERARSIQQREQARGMADDFLARQAEELETRMEAPREPQRFKL 595
Score = 39 (18.8 bits), Expect = 6.8e-13, Sum P(4) = 6.8e-13
Identities = 9/35 (25%), Positives = 17/35 (48%)
Query: 740 NPPNLAAAAEFAKRISNVNSKEEKSDAERERSRRL 774
+P +L A E K + ++ SD+E + R +
Sbjct: 185 DPESLGTAVEVLKDVQVPVKRQTPSDSEVKEEREV 219
Score = 39 (18.8 bits), Expect = 8.5e-13, Sum P(3) = 8.5e-13
Identities = 14/40 (35%), Positives = 17/40 (42%)
Query: 759 SKEEKSDAERERSRRLHDRSSQRE--KDRSDEDNNRTRDE 796
SKE DA R SQR+ +D + TRDE
Sbjct: 93 SKERGGDAGRRAGLGASSLESQRQNVRDAMMQLQPPTRDE 132
Score = 38 (18.4 bits), Expect = 8.5e-13, Sum P(4) = 8.5e-13
Identities = 10/31 (32%), Positives = 16/31 (51%)
Query: 740 NPPNLAAAAEFAKRISNVNSKEEKSDAERER 770
N PN+ +A + ++ SK DA +ER
Sbjct: 66 NMPNINFSAPVIRLGTSGPSKSATPDASKER 96
>UNIPROTKB|E9PQU5 [details] [associations]
symbol:RBM25 "RNA-binding protein 25" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AL442663
EMBL:AC004858 HGNC:HGNC:23244 ChiTaRS:RBM25 IPI:IPI00982364
ProteinModelPortal:E9PQU5 SMR:E9PQU5 Ensembl:ENST00000531500
ArrayExpress:E9PQU5 Bgee:E9PQU5 Uniprot:E9PQU5
Length = 243
Score = 180 (68.4 bits), Expect = 2.1e-16, Sum P(2) = 2.1e-16
Identities = 38/89 (42%), Positives = 53/89 (59%)
Query: 217 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRA 276
P T V+VG I+ A + +L CG V SWKR Q S G + FGFCE++ E LRA
Sbjct: 85 PTTTVFVGNISEKASDMLIRQLLAKCGLVLSWKRVQGAS-GKLQAFGFCEYKEPESTLRA 143
Query: 277 LRLLNKFNIDGQELMLKVDQATREYLERY 305
LRLL+ I ++L++KVD T+ L+ +
Sbjct: 144 LRLLHDLQIGEKKLLVKVDAKTKAQLDEW 172
Score = 58 (25.5 bits), Expect = 2.1e-16, Sum P(2) = 2.1e-16
Identities = 16/39 (41%), Positives = 20/39 (51%)
Query: 124 PGVPGQPPN-PALRPYAPIPNGYGAVPAPASGLPRYPAP 161
PG+P PP P P P+P G +P P S + PAP
Sbjct: 19 PGIP--PPQFPGFPP--PVPPGTPMIPVPMSIMA--PAP 51
Score = 58 (25.5 bits), Expect = 2.1e-16, Sum P(2) = 2.1e-16
Identities = 16/43 (37%), Positives = 18/43 (41%)
Query: 121 MQYPGVPGQPPN--PALRPYAPIPNGYGAVPAPASGLPRYPAP 161
M +P +PP PAL P P P G P G P P P
Sbjct: 1 MSFPPHLNRPPMGIPALPPGIPPPQFPGFPPPVPPGTPMIPVP 43
Score = 56 (24.8 bits), Expect = 3.3e-16, Sum P(2) = 3.3e-16
Identities = 14/31 (45%), Positives = 15/31 (48%)
Query: 60 PA-PASLPPAPVQSFVPPTQP-ISYRPVPMS 88
PA P +PP F PP P PVPMS
Sbjct: 15 PALPPGIPPPQFPGFPPPVPPGTPMIPVPMS 45
>RGD|1565486 [details] [associations]
symbol:RGD1565486 "similar to RNA binding motif protein 25"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 RGD:1565486 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 OrthoDB:EOG498V0R IPI:IPI00948221
Ensembl:ENSRNOT00000064529 ArrayExpress:D3ZYI5 Uniprot:D3ZYI5
Length = 494
Score = 180 (68.4 bits), Expect = 2.9e-15, Sum P(4) = 2.9e-15
Identities = 38/89 (42%), Positives = 53/89 (59%)
Query: 217 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRA 276
P T V+VG I+ A + +L CG V SWKR Q S G + FGFCE++ E LRA
Sbjct: 85 PTTTVFVGNISEKASDMLIRQLLAKCGLVLSWKRVQGAS-GKLQAFGFCEYKEPESTLRA 143
Query: 277 LRLLNKFNIDGQELMLKVDQATREYLERY 305
LRLL+ I ++L++KVD T+ L+ +
Sbjct: 144 LRLLHDLQIGEKKLLVKVDAKTKAQLDEW 172
Score = 66 (28.3 bits), Expect = 2.4e-14, Sum P(3) = 2.4e-14
Identities = 23/108 (21%), Positives = 54/108 (50%)
Query: 755 SNVNSKEEKSDAERERSRRLHDRSSQREKDRSDEDNNRTR-DEHKEKILDRD--RDRE-H 810
S +N+ ++SD+ H R ++EK + DED N +E K ++ R+ + R+ H
Sbjct: 219 SELNAPSQESDS--------HPRKKKKEK-KEDEDINAIEMEEDKRDLISREISKFRDTH 269
Query: 811 GLDKVKTPDNKKLLDAKQLIDMIPKTKEELFSYEI-NWAVYDKHELHE 857
+ +T ++++ ++ ++ + KE + + NW + ++ + E
Sbjct: 270 KKHRDRTKEDEEDAYERRKLERKLREKEAAYQERLKNWEIRERKKTRE 317
Score = 63 (27.2 bits), Expect = 4.8e-14, Sum P(3) = 4.8e-14
Identities = 23/119 (19%), Positives = 55/119 (46%)
Query: 723 DYSTEELQAAQPHVSGANPPNLAAAAEFAKRISNVNSKEEKSDA-ERERSRRLHDRSSQR 781
+YS+E L A S ++P + + I+ + +E+K D RE S+ R
Sbjct: 216 EYSSE-LNAPSQE-SDSHPRKKKKEKKEDEDINAIEMEEDKRDLISREISKFRDTHKKHR 273
Query: 782 EKDRSDEDNNRTRDEHKEKILDRDRDREHGLDKVKTPDNKKLLDAKQLIDMIPKTKEEL 840
++ + DE++ R + + K+ +++ + L + + KK + ++ + + + E+
Sbjct: 274 DRTKEDEEDAYERRKLERKLREKEAAYQERLKNWEIRERKKTREYEKEAEREEERRREM 332
Score = 58 (25.5 bits), Expect = 2.9e-15, Sum P(4) = 2.9e-15
Identities = 16/39 (41%), Positives = 20/39 (51%)
Query: 124 PGVPGQPPN-PALRPYAPIPNGYGAVPAPASGLPRYPAP 161
PG+P PP P P P+P G +P P S + PAP
Sbjct: 19 PGIP--PPQFPGFPP--PVPPGTPMIPVPMSIMA--PAP 51
Score = 58 (25.5 bits), Expect = 2.9e-15, Sum P(4) = 2.9e-15
Identities = 16/43 (37%), Positives = 18/43 (41%)
Query: 121 MQYPGVPGQPPN--PALRPYAPIPNGYGAVPAPASGLPRYPAP 161
M +P +PP PAL P P P G P G P P P
Sbjct: 1 MSFPPHLNRPPMGIPALPPGIPPPQFPGFPPPVPPGTPMIPVP 43
Score = 57 (25.1 bits), Expect = 2.9e-15, Sum P(4) = 2.9e-15
Identities = 17/60 (28%), Positives = 30/60 (50%)
Query: 748 AEFAKRISNV--NSKEEKSDAERERSRRLHDRSSQREKDRSDEDNNRTRD-EHKEKILDR 804
A+ AKR+ + +++ D + R L R REK+ ++ +R R+ E E+I R
Sbjct: 333 AKEAKRLKEFLEDYDDDRDDPKYYRGSALQKRLRDREKEMEADERDRKREKEELEEIRQR 392
Score = 56 (24.8 bits), Expect = 4.6e-15, Sum P(4) = 4.6e-15
Identities = 14/31 (45%), Positives = 15/31 (48%)
Query: 60 PA-PASLPPAPVQSFVPPTQP-ISYRPVPMS 88
PA P +PP F PP P PVPMS
Sbjct: 15 PALPPGIPPPQFPGFPPPVPPGTPMIPVPMS 45
Score = 55 (24.4 bits), Expect = 2.9e-15, Sum P(4) = 2.9e-15
Identities = 19/67 (28%), Positives = 31/67 (46%)
Query: 326 KEDESVQSVEKNEPTK---SPENLKDNETGNKESHDPTNFGVVTEEDRKADQEALEKLTC 382
KEDE + ++E E + S E K +T +K+ D T +R+ + L +
Sbjct: 240 KEDEDINAIEMEEDKRDLISREISKFRDT-HKKHRDRTKEDEEDAYERRKLERKLREKEA 298
Query: 383 MVEERLK 389
+ERLK
Sbjct: 299 AYQERLK 305
Score = 53 (23.7 bits), Expect = 7.4e-15, Sum P(4) = 7.4e-15
Identities = 17/59 (28%), Positives = 27/59 (45%)
Query: 759 SKEEKSDAERERSRRLHDRSSQREKDRSDEDNNRTRDEHK----EKILDRDRDREHGLD 813
++E + +AERE RR + ED + RD+ K + R RDRE ++
Sbjct: 315 TREYEKEAEREEERRREMAKEAKRLKEFLEDYDDDRDDPKYYRGSALQKRLRDREKEME 373
Score = 51 (23.0 bits), Expect = 1.2e-14, Sum P(4) = 1.2e-14
Identities = 14/43 (32%), Positives = 25/43 (58%)
Query: 768 RERSR-RLHDRSSQREKDRSDEDNNRTRDEHKEKILDRDRDRE 809
RER + R +++ ++RE++R E + KE + D D DR+
Sbjct: 310 RERKKTREYEKEAEREEERRREMAKEAK-RLKEFLEDYDDDRD 351
Score = 47 (21.6 bits), Expect = 1.9e-14, Sum P(4) = 1.9e-14
Identities = 23/115 (20%), Positives = 42/115 (36%)
Query: 348 DNETGNKESHDPTNFGVVTEEDRKADQEALEKLTCMVEERLKTNXXXXXXXQTTADGSGI 407
D K+++ VT +D +A E ++ M++ ++
Sbjct: 170 DEWKAKKKANGNARPETVTNDDEEALDEETKRRDQMIKGAIEVLIREYSSELNAPSQESD 229
Query: 408 SNSELPAKARDGDSDVDMIRNDIAEDKLD---DETTS--DTKASDHDRPETSSPD 457
S+ K + D D++ I ++ EDK D E + DT DR + D
Sbjct: 230 SHPRKKKKEKKEDEDINAI--EMEEDKRDLISREISKFRDTHKKHRDRTKEDEED 282
Score = 39 (18.8 bits), Expect = 1.3e-11, Sum P(3) = 1.3e-11
Identities = 7/14 (50%), Positives = 11/14 (78%)
Query: 367 EEDRKADQEALEKL 380
E DRK ++E LE++
Sbjct: 376 ERDRKREKEELEEI 389
>UNIPROTKB|E2RQR0 [details] [associations]
symbol:RBM25 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104356 EMBL:AAEX03005833
ProteinModelPortal:E2RQR0 PRIDE:E2RQR0 Ensembl:ENSCAFT00000037190
Uniprot:E2RQR0
Length = 211
Score = 180 (68.4 bits), Expect = 8.2e-13, P = 8.2e-13
Identities = 38/89 (42%), Positives = 53/89 (59%)
Query: 217 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRA 276
P T V+VG I+ A + +L CG V SWKR Q S G + FGFCE++ E LRA
Sbjct: 47 PTTTVFVGNISEKASDMLIRQLLAKCGLVLSWKRVQGAS-GKLQAFGFCEYKEPESTLRA 105
Query: 277 LRLLNKFNIDGQELMLKVDQATREYLERY 305
LRLL+ I ++L++KVD T+ L+ +
Sbjct: 106 LRLLHDLQIGEKKLLVKVDAKTKAQLDEW 134
>POMBASE|SPBC839.10 [details] [associations]
symbol:usp107 "U1 snRNP-associated protein Usp107"
species:4896 "Schizosaccharomyces pombe" [GO:0000395 "mRNA
5'-splice site recognition" evidence=IC] [GO:0003723 "RNA binding"
evidence=ISO] [GO:0005634 "nucleus" evidence=IDA] [GO:0005681
"spliceosomal complex" evidence=IEA] [GO:0005685 "U1 snRNP"
evidence=IDA] [GO:0005829 "cytosol" evidence=IDA] [GO:0045292 "mRNA
cis splicing, via spliceosome" evidence=ISO] InterPro:IPR000504
InterPro:IPR002483 InterPro:IPR012677 Pfam:PF00076 Pfam:PF01480
PROSITE:PS50102 PROSITE:PS51025 SMART:SM00311 PomBase:SPBC839.10
GO:GO:0005829 GO:GO:0000166 EMBL:CU329671 Gene3D:3.30.70.330
GO:GO:0005681 GO:GO:0003723 Gene3D:1.20.1390.10 GO:GO:0005685
GO:GO:0000395 eggNOG:NOG250187 EMBL:AB027940 PIR:T40717
RefSeq:NP_595250.1 ProteinModelPortal:Q8WZK0 IntAct:Q8WZK0
EnsemblFungi:SPBC839.10.1 GeneID:2541211 KEGG:spo:SPBC839.10
OMA:NINFSAP OrthoDB:EOG4W3WWB NextBio:20802323 Uniprot:Q8WZK0
Length = 695
Score = 148 (57.2 bits), Expect = 2.9e-12, Sum P(3) = 2.9e-12
Identities = 31/100 (31%), Positives = 57/100 (57%)
Query: 819 DNKKLLDAKQLIDMIPKTKEELFSYEINWAVYDKHELHERMRPWISKKITEFLGEEETTL 878
D +K + LI+ IP E L++ I+W+ + L E M+ +++KKI E++G +E +L
Sbjct: 586 DAEKTKRLRSLIEKIPVEAESLWALPIDWSKVTEDLLKEEMQAFVTKKIIEYIGIQEDSL 645
Query: 879 VDYIVSSTQDHVKASQMLELLQTILDDEAEMFVLKMWRML 918
+ + + + H A Q++ L L ++A FV K++R L
Sbjct: 646 ITFTIDHIRQHKGAEQLVSELDLALAEDAPEFVSKVYRYL 685
Score = 104 (41.7 bits), Expect = 2.9e-12, Sum P(3) = 2.9e-12
Identities = 23/70 (32%), Positives = 37/70 (52%)
Query: 214 AEKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGV 273
+++ + +++G I D ++ +L++ G + SW+R N FGF EFES E
Sbjct: 134 SQQMRRMLFIGNIPKELDDFWMDKILRLSGKLASWRRVADADNSMTS-FGFAEFESNEQF 192
Query: 274 LRALRLLNKF 283
RAL LN F
Sbjct: 193 SRALEALNDF 202
Score = 41 (19.5 bits), Expect = 2.9e-12, Sum P(3) = 2.9e-12
Identities = 19/63 (30%), Positives = 28/63 (44%)
Query: 752 KRISNVNSKEEKSDAERERSRRLHDRSS--QREKDRSDED--NNRTRDEH-KEKILDRDR 806
KR + EE ER R R++ +RE R +E+ NN + + EK+ D
Sbjct: 399 KRRKDQLEAEEYYARERRWMNREKARTAALEREAAREEEERVNNTSFGTYLSEKLASFDD 458
Query: 807 DRE 809
D E
Sbjct: 459 DEE 461
Score = 40 (19.1 bits), Expect = 3.7e-12, Sum P(3) = 3.7e-12
Identities = 17/67 (25%), Positives = 27/67 (40%)
Query: 765 DAERERSRRLHDRSSQR---EKDRSDEDNNRTRDEHKEKILDRDRDREHGLDKVKTPDNK 821
+A RE R+++ S EK S +D+ R E +DR H ++
Sbjct: 431 EAAREEEERVNNTSFGTYLSEKLASFDDDEEARVSRDEYFVDRAAWIRHRAVARAREEDA 490
Query: 822 KLLDAKQ 828
LD K+
Sbjct: 491 DALDRKE 497
>UNIPROTKB|Q66II8 [details] [associations]
symbol:snrnp70 "U1 small nuclear ribonucleoprotein 70 kDa"
species:8364 "Xenopus (Silurana) tropicalis" [GO:0000398 "mRNA
splicing, via spliceosome" evidence=ISS] [GO:0003723 "RNA binding"
evidence=ISS] [GO:0005681 "spliceosomal complex" evidence=ISS]
[GO:0043484 "regulation of RNA splicing" evidence=ISS]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 GO:GO:0016607 Gene3D:3.30.70.330
GO:GO:0005681 GO:GO:0003723 GO:GO:0060218 GO:GO:0043484
GO:GO:0000398 eggNOG:COG0724 KO:K11093 InterPro:IPR022023
Pfam:PF12220 CTD:6625 GeneTree:ENSGT00530000063750
OrthoDB:EOG4CJVJ7 HOVERGEN:HBG012300 EMBL:CR760195 EMBL:BC081331
RefSeq:NP_001008126.1 UniGene:Str.26779 ProteinModelPortal:Q66II8
STRING:Q66II8 Ensembl:ENSXETT00000049555 GeneID:493488
KEGG:xtr:493488 Xenbase:XB-GENE-992818 InParanoid:Q66II8
OMA:RHDKYDR Bgee:Q66II8 Uniprot:Q66II8
Length = 471
Score = 110 (43.8 bits), Expect = 6.2e-08, Sum P(3) = 6.2e-08
Identities = 23/83 (27%), Positives = 47/83 (56%)
Query: 760 KEEKSDAERERSRRLHDRSSQREKDRS-DEDNNRTRDEHKEKILDRDRDREHGLDKVKTP 818
K+ D +R+R RR R +R+KDR D D R RD +++ D R+R+ G D+ +
Sbjct: 365 KDRDKDRDRDRDRRRSHRDRERDKDRERDRDRRRDRDRDRDRDRDHKRERDRG-DRGEKR 423
Query: 819 DNKKLLDAKQLIDMIPKTKEELF 841
+ +++ D +++ +T ++++
Sbjct: 424 E-ERVPDNGMVMEQAEETSQDMY 445
Score = 110 (43.8 bits), Expect = 1.9e-05, Sum P(3) = 1.9e-05
Identities = 25/66 (37%), Positives = 39/66 (59%)
Query: 761 EEKS-DAERERSRRLHDRSSQREKDRSDEDNNRTRDEHKEKILDRDRDREHGLDKVKTPD 819
EEK+ D +RER R DR R++DR ++R R+ K++ DRDR R+ D+ + D
Sbjct: 351 EEKNRDRDRERDRE-KDRDKDRDRDRDRRRSHRDRERDKDRERDRDRRRDRDRDRDRDRD 409
Query: 820 NKKLLD 825
+K+ D
Sbjct: 410 HKRERD 415
Score = 110 (43.8 bits), Expect = 1.9e-05, Sum P(3) = 1.9e-05
Identities = 25/68 (36%), Positives = 36/68 (52%)
Query: 754 ISNVNSKEEKSDAERERSRRLHDRSSQREKDRS-DEDNNRT-RDEHKEKILDRDRDREHG 811
I + K+E + R+R R DR R+KDR D D R+ RD ++K +RDRDR
Sbjct: 341 IDGIELKQEPEEKNRDRDRE-RDREKDRDKDRDRDRDRRRSHRDRERDKDRERDRDRRRD 399
Query: 812 LDKVKTPD 819
D+ + D
Sbjct: 400 RDRDRDRD 407
Score = 103 (41.3 bits), Expect = 0.00042, Sum P(2) = 0.00042
Identities = 22/64 (34%), Positives = 36/64 (56%)
Query: 759 SKEEKSDAERERSRRLHDRSSQREKDRSDEDNNRTRDEHKEKILDRDRDREHGLDKVKTP 818
S+E + ER RSR R +R + R E+ R+R+ ++K D+D+D++ DK K
Sbjct: 236 SRERDKERERRRSRSRERR--RRSRSREKEERKRSRERSRDKDKDKDKDKDKEKDKDKDR 293
Query: 819 DNKK 822
D K+
Sbjct: 294 DRKR 297
Score = 81 (33.6 bits), Expect = 5.1e-05, Sum P(3) = 5.1e-05
Identities = 21/70 (30%), Positives = 33/70 (47%)
Query: 760 KEEKSDAERERSRRLHDRSSQREKDRSDEDNNRTRDEHKEKILDRDRDREHGLDKVKTPD 819
+E D ER+R RR DR R++DR D R R + EK +R D +++ +
Sbjct: 384 RERDKDRERDRDRR-RDRDRDRDRDR-DHKRERDRGDRGEKREERVPDNGMVMEQAEETS 441
Query: 820 NKKLLDAKQL 829
LD + +
Sbjct: 442 QDMYLDQESM 451
Score = 73 (30.8 bits), Expect = 5.1e-05, Sum P(3) = 5.1e-05
Identities = 31/136 (22%), Positives = 53/136 (38%)
Query: 326 KEDESVQSVEKN-EPTKSPENLKDNETGNKESHDPTNFGVVTEEDRKADQEALEKLTCMV 384
+++E +S E++ + K + KD E + D E R+ D++ EK V
Sbjct: 261 EKEERKRSRERSRDKDKDKDKDKDKEKDKDKDRDRKRRSRSRERKRERDRDR-EKKEDRV 319
Query: 385 EERLKTNXXXXXXXQTTADGSGISNSELPAKARDGDSDVDMIRNDIAEDKLDDETTSDTK 444
E + + T D GI EL + + + D D R+ + D + D +
Sbjct: 320 EGEVPESVDVPQDDAQTGD-LGIDGIELKQEPEEKNRDRDRERDREKDRDKDRDRDRDRR 378
Query: 445 ASDHDRPETSSPDRSR 460
S DR +R R
Sbjct: 379 RSHRDRERDKDRERDR 394
Score = 71 (30.1 bits), Expect = 6.2e-08, Sum P(3) = 6.2e-08
Identities = 30/133 (22%), Positives = 50/133 (37%)
Query: 332 QSVEKNEPTKSPENLKDNETGNKESHDPTNFGVVTEEDRKADQEALEKLTCMVEERLKTN 391
+S EK E +S E +D + + D E+D+ D++ K ER +
Sbjct: 258 RSREKEERKRSRERSRDKDKDKDKDKDK-------EKDKDKDRD--RKRRSRSRERKRER 308
Query: 392 XXXXXXXQTTADGSGISNSELPAK-ARDGDSDVDMIR-NDIAEDKLDDETTSDTKASDHD 449
+ +G + ++P A+ GD +D I E+K D + D D
Sbjct: 309 DRDREKKEDRVEGEVPESVDVPQDDAQTGDLGIDGIELKQEPEEKNRDRDRERDREKDRD 368
Query: 450 RPETSSPDRSRVH 462
+ DR R H
Sbjct: 369 KDRDRDRDRRRSH 381
Score = 65 (27.9 bits), Expect = 6.2e-08, Sum P(3) = 6.2e-08
Identities = 14/57 (24%), Positives = 29/57 (50%)
Query: 240 KVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVDQ 296
+V G +K +G P+G+ F E+E + A + + IDG+ +++ V++
Sbjct: 124 EVYGPIKRIHMVYNKRSGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDVER 180
Score = 46 (21.3 bits), Expect = 1.9e-05, Sum P(3) = 1.9e-05
Identities = 20/94 (21%), Positives = 34/94 (36%)
Query: 367 EEDRKADQEALEKLTCMVEERLKTNXXXXXXXQTTADGSGISNSELPAKARDGDSDVDMI 426
+ DR+ +++ E+ +ER + + + ++RD D D D
Sbjct: 223 DRDRERERDRRERSRERDKERERRRSRSRERRRRSRSREKEERKRSRERSRDKDKDKDKD 282
Query: 427 RNDIAEDKLDDETTSDTKASDHDRPETSSPDRSR 460
+ D +DK D D K R DR R
Sbjct: 283 K-DKEKDKDKDR---DRKRRSRSRERKRERDRDR 312
>DICTYBASE|DDB_G0294559 [details] [associations]
symbol:DDB_G0294559 "RNA-binding region RNP-1
domain-containing protein" species:44689 "Dictyostelium discoideum"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0008150 "biological_process"
evidence=ND] [GO:0005575 "cellular_component" evidence=ND]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 dictyBase:DDB_G0294559 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724 KO:K13107
EMBL:AAFI02000058 OMA:VFSQNRY RefSeq:XP_001134546.1
ProteinModelPortal:Q1ZXF8 EnsemblProtists:DDB0232419 GeneID:8624369
KEGG:ddi:DDB_G0294559 ProtClustDB:CLSZ2847454 Uniprot:Q1ZXF8
Length = 348
Score = 92 (37.4 bits), Expect = 6.0e-06, Sum P(2) = 6.0e-06
Identities = 20/70 (28%), Positives = 40/70 (57%)
Query: 759 SKEEKSDAERERSR-RLHDRSSQREKDRSDEDNNRTRDEHKEKILDRDRDREHGLDKVKT 817
S+ + D ER+R R R DR+ RE++ D +R++ + + DR R+RE+ + ++
Sbjct: 278 SRSRERDRERDRERYRDRDRNRSREREYRDRSRSRSKSRDRYRYRDRSREREY---RDRS 334
Query: 818 PDNKKLLDAK 827
D ++ D++
Sbjct: 335 RDRERYRDSR 344
Score = 91 (37.1 bits), Expect = 6.0e-06, Sum P(2) = 6.0e-06
Identities = 48/253 (18%), Positives = 94/253 (37%)
Query: 221 VYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLL 280
+YVG + + V+++ G + + G +GF F ++ + + A+ L
Sbjct: 35 IYVGGLNYDLNEGDVIAIFSQYGEISECNLVRNKETGRSQGFCFVGYDQQKSTVLAVDNL 94
Query: 281 NKFNIDGQELMLKVDQATREYLERYVDXXXXXXXXXXXXQDAGA--GKEDESVQSVEKN- 337
N N+ G+ + KVD ++Y + D + G +D S + N
Sbjct: 95 NGINLLGKTI--KVDHV-KDYKRPKKNNEDLTDTDDDDDDDNNSDDGTDDNSDSDDDNNN 151
Query: 338 ----EPTKSPENLK-DNETGNKESHDPTNFGVVTEEDRKADQEALEKLTCMVEERLKTNX 392
E K + K + + K+ + E + ++ ++K E+ L+
Sbjct: 152 NDNDEKKKEKKKRKLEKKLKKKQKREEKRKRRENETPEQREKRKMDKQLKKDEKLLRKQD 211
Query: 393 XXXXXXQTTADGSGISNSELPAKARDGDSDVDMIRNDIAE-----DKLDDETTSDTKASD 447
+ T D + + + S D IRND + DKL++ + + +
Sbjct: 212 KKRLKFENTTDTTTTTTTTTTTSP---PSSFDSIRNDRGDQNKSNDKLENRDKHNHRNTS 268
Query: 448 HDRPETSSPDRSR 460
DR + S RSR
Sbjct: 269 RDRIKDRSRSRSR 281
Score = 82 (33.9 bits), Expect = 6.4e-05, Sum P(2) = 6.4e-05
Identities = 22/64 (34%), Positives = 30/64 (46%)
Query: 759 SKEEKSDAERERSRRLHDRSSQREKDRSDEDNNRTRDEHKEKILDRDRDREHGLDKVKTP 818
S++ D R RSR DR RE+ R D D NR+R+ DR R R D+ +
Sbjct: 268 SRDRIKDRSRSRSRE-RDRERDRERYR-DRDRNRSREREYR---DRSRSRSKSRDRYRYR 322
Query: 819 DNKK 822
D +
Sbjct: 323 DRSR 326
>POMBASE|SPAC644.16 [details] [associations]
symbol:SPAC644.16 "RNA-binding protein (predicted)"
species:4896 "Schizosaccharomyces pombe" [GO:0003723 "RNA binding"
evidence=ISO] [GO:0005634 "nucleus" evidence=IDA] [GO:0005849 "mRNA
cleavage factor complex" evidence=ISO] [GO:0006378 "mRNA
polyadenylation" evidence=ISO] [GO:0006379 "mRNA cleavage"
evidence=ISO] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 PomBase:SPAC644.16 EMBL:CU329670
GO:GO:0000166 Gene3D:3.30.70.330 eggNOG:NOG246793 GO:GO:0006378
GO:GO:0003723 GO:GO:0006379 GO:GO:0005849 KO:K14407
InterPro:IPR025742 InterPro:IPR026896 Pfam:PF14327 Pfam:PF14304
OrthoDB:EOG4GQTF6 HSSP:P33240 RefSeq:NP_593884.1
ProteinModelPortal:Q9P6P7 EnsemblFungi:SPAC644.16.1 GeneID:2543462
KEGG:spo:SPAC644.16 OMA:SHEERAN NextBio:20804474 Uniprot:Q9P6P7
Length = 422
Score = 135 (52.6 bits), Expect = 1.3e-05, P = 1.3e-05
Identities = 32/88 (36%), Positives = 44/88 (50%)
Query: 217 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRA 276
P VYVG I + V+ + K G VKS++ P +G PKG+GFCE+ A
Sbjct: 3 PSCVVYVGNIPYEMAEEQVIDIFKQSGPVKSFQLVIDPESGQPKGYGFCEYHDPATAASA 62
Query: 277 LRLLNKFNIDGQELMLKVDQATREYLER 304
+R LN N D L+VD T + + R
Sbjct: 63 VRNLN--NYDAGTRRLRVDFPTADQIRR 88
>MGI|MGI:2145245 [details] [associations]
symbol:Srek1 "splicing regulatory glutamine/lysine-rich
protein 1" species:10090 "Mus musculus" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003674 "molecular_function"
evidence=ND] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005681 "spliceosomal
complex" evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0008150 "biological_process" evidence=ND] [GO:0008380 "RNA
splicing" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
PROSITE:PS50102 SMART:SM00360 MGI:MGI:2145245 GO:GO:0005739
GO:GO:0008380 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0005681 GO:GO:0003676 GeneTree:ENSGT00700000104035
eggNOG:NOG277302 KO:K13165 CTD:140890 HOVERGEN:HBG079174
OMA:EKEQDKD OrthoDB:EOG4K3KWS EMBL:AK033354 EMBL:AK037115
EMBL:AK039311 EMBL:AK044086 EMBL:AK052265 EMBL:BC070460
IPI:IPI00227738 IPI:IPI00379480 RefSeq:NP_766180.1
UniGene:Mm.458176 ProteinModelPortal:Q8BZX4 SMR:Q8BZX4
STRING:Q8BZX4 PhosphoSite:Q8BZX4 PaxDb:Q8BZX4 PRIDE:Q8BZX4
Ensembl:ENSMUST00000074616 GeneID:218543 KEGG:mmu:218543
UCSC:uc007rsh.1 InParanoid:Q8BZX4 NextBio:376337 Bgee:Q8BZX4
CleanEx:MM_SFRS12 Genevestigator:Q8BZX4
GermOnline:ENSMUSG00000032621 Uniprot:Q8BZX4
Length = 494
Score = 118 (46.6 bits), Expect = 1.5e-05, Sum P(2) = 1.5e-05
Identities = 27/73 (36%), Positives = 42/73 (57%)
Query: 757 VNSKEEKSDAERERSRRLH-DRSSQREKDRSDE-DNNRTRDEHKEKILDRDRDREHGLDK 814
V KE + + ERE+ R +R ++KDR E D+ + RD+ KEK D+D++RE D+
Sbjct: 275 VKEKEREKEREREKDREKDKERGKNKDKDREKEKDHEKERDKEKEKEQDKDKEREK--DR 332
Query: 815 VKTPDNKKLLDAK 827
K D K+ + K
Sbjct: 333 SKETDEKRKKEKK 345
Score = 104 (41.7 bits), Expect = 0.00047, Sum P(2) = 0.00047
Identities = 23/71 (32%), Positives = 40/71 (56%)
Query: 760 KEEKSDAERERSR-RLHDRSSQREKDRS-DEDNNRTRDEHKEKILDRDRDREHGLDKVKT 817
KE + ERE+ R R DR +E+ ++ D+D + +D KE+ D+++++E DK +
Sbjct: 272 KERVKEKEREKEREREKDREKDKERGKNKDKDREKEKDHEKER--DKEKEKEQDKDKERE 329
Query: 818 PDNKKLLDAKQ 828
D K D K+
Sbjct: 330 KDRSKETDEKR 340
Score = 64 (27.6 bits), Expect = 1.5e-05, Sum P(2) = 1.5e-05
Identities = 21/58 (36%), Positives = 27/58 (46%)
Query: 221 VYVGKI-APTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRAL 277
VYVG + + T +D +L K G VK + A + P F F EF V RAL
Sbjct: 71 VYVGNLNSQTTTADQLLEFFKQVGEVKFVRMAGDETQ--PTRFAFVEFADQNSVPRAL 126
>ZFIN|ZDB-GENE-030131-5277 [details] [associations]
symbol:cpsf6 "cleavage and polyadenylation
specific factor 6" species:7955 "Danio rerio" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0003729 "mRNA binding" evidence=ISS]
[GO:0005634 "nucleus" evidence=IEA;ISS] [GO:0005849 "mRNA cleavage
factor complex" evidence=ISS] [GO:0006378 "mRNA polyadenylation"
evidence=ISS] [GO:0006397 "mRNA processing" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-030131-5277 GO:GO:0000166 GO:GO:0003729
Gene3D:3.30.70.330 GO:GO:0006378 GO:GO:0005849 CTD:11052
eggNOG:NOG313287 KO:K14398 OrthoDB:EOG432101 EMBL:AY398330
EMBL:BC067642 IPI:IPI00482991 IPI:IPI00734952 RefSeq:NP_001017993.1
UniGene:Dr.75857 ProteinModelPortal:Q6NWC6 STRING:Q6NWC6
PRIDE:Q6NWC6 Ensembl:ENSDART00000082289 Ensembl:ENSDART00000129521
GeneID:327069 KEGG:dre:327069 GeneTree:ENSGT00690000101901
HOVERGEN:HBG095955 InParanoid:Q6NWC6 OMA:LEHTLKG NextBio:20809866
ArrayExpress:Q6NWC6 Bgee:Q6NWC6 Uniprot:Q6NWC6
Length = 545
Score = 102 (41.0 bits), Expect = 2.3e-05, Sum P(2) = 2.3e-05
Identities = 23/51 (45%), Positives = 30/51 (58%)
Query: 759 SKEEKSDAERERSRRLHDRSSQREKDRSDEDNNRTRDEHKEKILDRDRDRE 809
S+E RE+SRR RS R +D E +R RD H+E+ DR+RDRE
Sbjct: 488 SRERDHSRSREKSRRHKSRSRDRHEDYYRE-RSRERDRHRERDRDRERDRE 537
Score = 80 (33.2 bits), Expect = 2.3e-05, Sum P(2) = 2.3e-05
Identities = 19/47 (40%), Positives = 23/47 (48%)
Query: 118 PPMMQYPGVPGQPPNPALRPYAPIPNGYGAVPAPASGL--PRYPAPY 162
PP + +PG GQPP + P P P GYG P P P P P+
Sbjct: 274 PPPVLFPGQFGQPPMGPMPP-GPPPPGYGPPPGPPPPQQGPPPPGPF 319
Score = 68 (29.0 bits), Expect = 0.00039, Sum P(2) = 0.00039
Identities = 17/39 (43%), Positives = 19/39 (48%)
Query: 118 PPMMQYPGVPGQPPNPALRPYAPIPNGYGAVPAPASGLP 156
P M P +P PP P L P P P G G +P P G P
Sbjct: 231 PGMQGPPRLPSGPPGP-LGPPGPPPPGQG-LPPPLGGPP 267
Score = 65 (27.9 bits), Expect = 0.00078, Sum P(2) = 0.00078
Identities = 19/51 (37%), Positives = 23/51 (45%)
Query: 118 PPMMQYPGVPGQPPNPALRP--YAP----IPNGYGAVPAPASGLPRYPAPY 162
PP MQ P G PP P + P + P +P+ G P P R P PY
Sbjct: 336 PPHMQGPPPGGPPPAPHVNPAFFPPPGNNMPSSDGRGPPPGDPYGR-PPPY 385
>DICTYBASE|DDB_G0287951 [details] [associations]
symbol:DDB_G0287951 "unknown" species:44689
"Dictyostelium discoideum" [GO:0008150 "biological_process"
evidence=ND] [GO:0005575 "cellular_component" evidence=ND]
[GO:0003674 "molecular_function" evidence=ND]
dictyBase:DDB_G0287951 eggNOG:NOG271996 InterPro:IPR013246
InterPro:IPR013243 Pfam:PF08209 PROSITE:PS51505 EMBL:AAFI02000105
RefSeq:XP_636971.1 ProteinModelPortal:Q54JM6
EnsemblProtists:DDB0238210 GeneID:8626380 KEGG:ddi:DDB_G0287951
OMA:RSARKQN Uniprot:Q54JM6
Length = 1447
Score = 120 (47.3 bits), Expect = 2.3e-05, Sum P(2) = 2.3e-05
Identities = 26/64 (40%), Positives = 38/64 (59%)
Query: 760 KEEKSDAERERSR-RLHDRSSQREKDRSDEDNNRTRDEHKEKILDRDRDREHGLDKVKTP 818
K + D ER+R R R DR R++DR D D +R RD +++ DRDRDR+ D+ K
Sbjct: 555 KLSEKDKERDRDRDRDRDRDRDRDRDR-DRDRDRDRDRERDRDRDRDRDRDREKDREKER 613
Query: 819 DNKK 822
D ++
Sbjct: 614 DKER 617
Score = 120 (47.3 bits), Expect = 2.3e-05, Sum P(2) = 2.3e-05
Identities = 29/85 (34%), Positives = 48/85 (56%)
Query: 757 VNSKEEKSDAERERSR-RLHDRSSQREKDRS-DEDNNRTRDEHKEKILDRDRDREHGLDK 814
++ K+++ D +R+R R R DR R++DR D D R RD +++ DR++DRE DK
Sbjct: 556 LSEKDKERDRDRDRDRDRDRDRDRDRDRDRDRDRDRERDRDRDRDRDRDREKDREKERDK 615
Query: 815 VKTPDNKKLLDAKQLIDMIPKTKEE 839
+ D K + ++ D K KE+
Sbjct: 616 ERDKDKDKEKEKEKDKDR-DKEKEK 639
Score = 117 (46.2 bits), Expect = 4.9e-05, Sum P(2) = 4.9e-05
Identities = 30/80 (37%), Positives = 45/80 (56%)
Query: 760 KEEKSDAERERSR-RLHDRSSQREKDRS---DEDNNRTRDEHKEKILDRDRDREHGLDKV 815
++ D +RER R R DR REKDR D++ ++ +D+ KEK D+DRD+E +K
Sbjct: 583 RDRDRDRDRERDRDRDRDRDRDREKDREKERDKERDKDKDKEKEKEKDKDRDKEKEKEKD 642
Query: 816 KTPDNKKLLDAKQLIDMIPK 835
K + +K D + D PK
Sbjct: 643 KEKEKEKDKDKDKEKDK-PK 661
Score = 71 (30.1 bits), Expect = 2.3e-05, Sum P(2) = 2.3e-05
Identities = 32/143 (22%), Positives = 53/143 (37%)
Query: 320 QDAGAGKEDESVQSVEKNEPTKSPENLKDNETGNKESHDPTNFGVVTEEDRKADQEALEK 379
+D GK+ + S N T + N+ + + + N T + K+++ +
Sbjct: 393 RDRDRGKDRNKLSSSSSN--TSAVSNISSSSSSINSGSNTKNLSSPTSSESKSERSSPIL 450
Query: 380 LTCMVEERLKTNXXXXXXXQTTADGSGISN-SELPAKARDGDSDVDMIRNDIAEDKLD-D 437
T V ++ + ++ G+S S+ K RD D D D E D
Sbjct: 451 STSNVSTS-SSSIPTSSLIKKSSSSIGVSGKSDKDYKDRDY-KDRDYKDRDYKEKDRDYK 508
Query: 438 ETTSDTKASDHDRPETSSPDRSR 460
E D K+ D DR DR R
Sbjct: 509 EKDRDYKSIDRDRDRDRDRDRDR 531
Score = 57 (25.1 bits), Expect = 0.00063, Sum P(2) = 0.00063
Identities = 25/138 (18%), Positives = 51/138 (36%)
Query: 323 GAGKEDESVQSVEKNEPTKSPENLKDNETGNKESHDPTNFGVVTEEDRKADQEALEKLTC 382
G GK+D+ ++ +++ +S + ++D + D R D+ ++
Sbjct: 265 GGGKDDKYMRDRDRSRD-RSRDRIRDRDRSRDRIRDRVR-DRSRSRSRDRDRYYRDRDRD 322
Query: 383 MVEERLKTNXXXXXXXQTTADGSGISNSELPAKARDGDSDVDMIRNDIAEDKLDDETTSD 442
+R + ++ G+ + RD D D D R D + D +
Sbjct: 323 RDRDRDRDRDRERDIGRSGGSSGGLDRD----RDRDRDRDRDR-RRDRDRSRSRDRSRDR 377
Query: 443 TKASDHDRPETSSPDRSR 460
++ D DR + DR R
Sbjct: 378 SRDRDRDRSRSRERDRDR 395
>GENEDB_PFALCIPARUM|MAL13P1.120 [details] [associations]
symbol:MAL13P1.120 "splicing factor,
putative" species:5833 "Plasmodium falciparum" [GO:0003729 "mRNA
binding" evidence=ISS] [GO:0008380 "RNA splicing" evidence=ISS]
InterPro:IPR000504 InterPro:IPR006509 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0008380 GO:GO:0000166 GO:GO:0003729 GO:GO:0006397
Gene3D:3.30.70.330 EMBL:AL844509 HSSP:Q60900 TIGRFAMs:TIGR01622
KO:K13091 OMA:VDINIDE RefSeq:XP_001349956.1
ProteinModelPortal:Q8IE99 IntAct:Q8IE99 MINT:MINT-1582995
EnsemblProtists:MAL13P1.120:mRNA GeneID:813670 KEGG:pfa:MAL13P1.120
EuPathDB:PlasmoDB:PF3D7_1321700 ProtClustDB:CLSZ2848098
Uniprot:Q8IE99
Length = 864
Score = 122 (48.0 bits), Expect = 2.5e-05, Sum P(3) = 2.5e-05
Identities = 27/78 (34%), Positives = 46/78 (58%)
Query: 752 KRISNVNSKEEKSDAERERSR-RLHDRSSQREKDRSDEDNNRTRDEHKEKILDRDRDREH 810
+++ + K ++ D ERER R R DR R++DR D D +R RD +E+ D+DRDR+H
Sbjct: 353 EKVYSKYDKMKRRDRERERDRDRDRDRDRDRDRDR-DRDRDRDRDRDREREKDKDRDRDH 411
Query: 811 GLDKVKTPDNKKLLDAKQ 828
D+ + + + D ++
Sbjct: 412 --DRYRDRERDRYRDRER 427
Score = 119 (46.9 bits), Expect = 5.2e-05, Sum P(3) = 5.2e-05
Identities = 26/71 (36%), Positives = 43/71 (60%)
Query: 759 SKEEKSDAERERSRRLHDRSSQREKDRS-DEDNNRTRDEHKEKILDRDRDREHGLDKVKT 817
S EEK ++ ++ +R DR +R++DR D D +R RD +++ DRDRDRE DK +
Sbjct: 350 SSEEKVYSKYDKMKR-RDRERERDRDRDRDRDRDRDRDRDRDRDRDRDRDREREKDKDRD 408
Query: 818 PDNKKLLDAKQ 828
D+ + D ++
Sbjct: 409 RDHDRYRDRER 419
Score = 65 (27.9 bits), Expect = 2.5e-05, Sum P(3) = 2.5e-05
Identities = 31/135 (22%), Positives = 50/135 (37%)
Query: 326 KEDE-SVQSVEKNEPTKSPENLKDNETGNKESHDP--TNFGVVTEEDRKADQEALEKLTC 382
KED+ + S K+E ++ E DN N D TN V + + + ++
Sbjct: 20 KEDKINGSSSNKDELIENKELKNDNLNNNTCDSDKKKTNKREVKRKSKVINDNKIDNENK 79
Query: 383 MVEERLKTNXXXXXXXQTTADGSGISNSELPAKARDGDSDVDMIRNDIAEDKLDDETTSD 442
+ + KTN D N E K D + D ++ +ND +D DD
Sbjct: 80 NTKRKKKTNGDVDINIDENFDED---NDENVDKNVDKNVDKNVDKNDDEDDGEDDGEDDG 136
Query: 443 TKASDHDRPETSSPD 457
+HD + D
Sbjct: 137 EDDGEHDGEDDGEDD 151
Score = 63 (27.2 bits), Expect = 2.9e-05, Sum P(2) = 2.9e-05
Identities = 32/148 (21%), Positives = 61/148 (41%)
Query: 326 KEDESVQ-SVEKNEPTKSPENL---KDNETGNKESHDPTNF---GVVTEEDRKADQEALE 378
KE+ V + N +K+ +N K + + K+ D N E ++K ++ LE
Sbjct: 169 KEESDVSDNHHNNRKSKNIKNSIRSKSSNSKTKKEDDDNNIHCNNSSQENEQKRKEQLLE 228
Query: 379 KLTCMVEERLKTNXXXXXXXQTTADGSGISNSELPAKARDGDSDVDMIRNDIA----EDK 434
E + + T++D + +N ++ S +ND + E++
Sbjct: 229 NKDNKKEGKNTNSSKVKKRYHTSSDENDRNNDNTSSEEERTKSRKKKHKNDNSDKKNENR 288
Query: 435 LDDETTSDTKASDHDRPETSSPDRSRVH 462
+ D ++S + +SD E SS D R H
Sbjct: 289 VVDYSSSSSSSSDASN-EYSSSDEERDH 315
Score = 60 (26.2 bits), Expect = 6.0e-05, Sum P(2) = 6.0e-05
Identities = 24/134 (17%), Positives = 55/134 (41%)
Query: 329 ESVQSVEKNEPTKSPENLKDNETGNKESHDPTNFGVVTEEDRKADQEALEKLTCMVEERL 388
E+ + ++ + T S + K T + E+ D N +EE+R ++ K +
Sbjct: 228 ENKDNKKEGKNTNSSKVKKRYHTSSDEN-DRNNDNTSSEEERTKSRKKKHKN----DNSD 282
Query: 389 KTNXXXXXXXQTTADGSGISNSELPAKARDGDSDVDMIRNDIAEDKLDDETTSDTKASDH 448
K N +++ S +++E + + D IR ++ ++ ++D+
Sbjct: 283 KKNENRVVDYSSSSSSSSDASNEYSSSDEERDHKKRKIRKTNRSRRISRSSSESNSSTDN 342
Query: 449 DRPETSSPDRSRVH 462
D+ TS +V+
Sbjct: 343 DKRGTSRSSEEKVY 356
Score = 55 (24.4 bits), Expect = 0.00024, Sum P(3) = 0.00024
Identities = 35/194 (18%), Positives = 73/194 (37%)
Query: 273 VLRALRLLNKFNIDGQELMLKVDQATREYLERYVDXXXXXXXXXXXXQDAGAGKE-DESV 331
V R +++N ID + K + T ++ +D D K D++V
Sbjct: 62 VKRKSKVINDNKIDNENKNTKRKKKTNGDVDINIDENFDED------NDENVDKNVDKNV 115
Query: 332 -QSVEKNEPTKSPENLKDNETGNKESHDPTNFGVVTEEDRKADQEALEKLTCMVEER-LK 389
++V+KN+ E+ +++ + HD + G ++ K + K + EE +
Sbjct: 116 DKNVDKNDDEDDGEDDGEDDGEDDGEHDGEDDGEDDSDEDKHENIPKNKADTLKEESDVS 175
Query: 390 TNXXXXXXXQTTADGSGISNSELPAKARDGDSDVDMIRNDIAEDKLDDETTSDTKASDHD 449
N + + +S K D D+++ + ++ E + K + +
Sbjct: 176 DNHHNNRKSKNIKNSIRSKSSNSKTKKEDDDNNIHCNNSSQENEQKRKEQLLENKDNKKE 235
Query: 450 RPET-SSPDRSRVH 462
T SS + R H
Sbjct: 236 GKNTNSSKVKKRYH 249
Score = 54 (24.1 bits), Expect = 0.00030, Sum P(3) = 0.00030
Identities = 27/146 (18%), Positives = 55/146 (37%)
Query: 320 QDAGAGKEDESV-QSVEKN--EPTKSPENLKDNETGNKESHDPTNFGVVTEEDRKADQEA 376
+D G DE +++ KN + K ++ DN N++S + N + K +E
Sbjct: 145 EDDGEDDSDEDKHENIPKNKADTLKEESDVSDNHHNNRKSKNIKNSIRSKSSNSKTKKED 204
Query: 377 LEK-LTC---MVEERLKTNXXXXXXXQTTADGSGISNSELPAKARDGDSDVDMIRNDIAE 432
+ + C E K +G ++S++ + + D RN+
Sbjct: 205 DDNNIHCNNSSQENEQKRKEQLLENKDNKKEGKNTNSSKVKKRYHTSSDEND--RNNDNT 262
Query: 433 DKLDDETTSDTKASDHDRPETSSPDR 458
++ T S K +D + + +R
Sbjct: 263 SSEEERTKSRKKKHKNDNSDKKNENR 288
Score = 42 (19.8 bits), Expect = 2.5e-05, Sum P(3) = 2.5e-05
Identities = 11/51 (21%), Positives = 24/51 (47%)
Query: 616 DNAVNGSLAEESAVESKGMDVEHDYHDDSIRENHMAGDPSSQNGNGDESTN 666
D + + S + +++ E D E D+ IR+ + + S + + ST+
Sbjct: 291 DYSSSSSSSSDASNEYSSSDEERDHKKRKIRKTNRSRRISRSSSESNSSTD 341
>UNIPROTKB|Q8IE99 [details] [associations]
symbol:MAL13P1.120 "Splicing factor, putative"
species:36329 "Plasmodium falciparum 3D7" [GO:0003729 "mRNA
binding" evidence=ISS] [GO:0008380 "RNA splicing" evidence=ISS]
InterPro:IPR000504 InterPro:IPR006509 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0008380 GO:GO:0000166 GO:GO:0003729 GO:GO:0006397
Gene3D:3.30.70.330 EMBL:AL844509 HSSP:Q60900 TIGRFAMs:TIGR01622
KO:K13091 OMA:VDINIDE RefSeq:XP_001349956.1
ProteinModelPortal:Q8IE99 IntAct:Q8IE99 MINT:MINT-1582995
EnsemblProtists:MAL13P1.120:mRNA GeneID:813670 KEGG:pfa:MAL13P1.120
EuPathDB:PlasmoDB:PF3D7_1321700 ProtClustDB:CLSZ2848098
Uniprot:Q8IE99
Length = 864
Score = 122 (48.0 bits), Expect = 2.5e-05, Sum P(3) = 2.5e-05
Identities = 27/78 (34%), Positives = 46/78 (58%)
Query: 752 KRISNVNSKEEKSDAERERSR-RLHDRSSQREKDRSDEDNNRTRDEHKEKILDRDRDREH 810
+++ + K ++ D ERER R R DR R++DR D D +R RD +E+ D+DRDR+H
Sbjct: 353 EKVYSKYDKMKRRDRERERDRDRDRDRDRDRDRDR-DRDRDRDRDRDREREKDKDRDRDH 411
Query: 811 GLDKVKTPDNKKLLDAKQ 828
D+ + + + D ++
Sbjct: 412 --DRYRDRERDRYRDRER 427
Score = 119 (46.9 bits), Expect = 5.2e-05, Sum P(3) = 5.2e-05
Identities = 26/71 (36%), Positives = 43/71 (60%)
Query: 759 SKEEKSDAERERSRRLHDRSSQREKDRS-DEDNNRTRDEHKEKILDRDRDREHGLDKVKT 817
S EEK ++ ++ +R DR +R++DR D D +R RD +++ DRDRDRE DK +
Sbjct: 350 SSEEKVYSKYDKMKR-RDRERERDRDRDRDRDRDRDRDRDRDRDRDRDRDREREKDKDRD 408
Query: 818 PDNKKLLDAKQ 828
D+ + D ++
Sbjct: 409 RDHDRYRDRER 419
Score = 65 (27.9 bits), Expect = 2.5e-05, Sum P(3) = 2.5e-05
Identities = 31/135 (22%), Positives = 50/135 (37%)
Query: 326 KEDE-SVQSVEKNEPTKSPENLKDNETGNKESHDP--TNFGVVTEEDRKADQEALEKLTC 382
KED+ + S K+E ++ E DN N D TN V + + + ++
Sbjct: 20 KEDKINGSSSNKDELIENKELKNDNLNNNTCDSDKKKTNKREVKRKSKVINDNKIDNENK 79
Query: 383 MVEERLKTNXXXXXXXQTTADGSGISNSELPAKARDGDSDVDMIRNDIAEDKLDDETTSD 442
+ + KTN D N E K D + D ++ +ND +D DD
Sbjct: 80 NTKRKKKTNGDVDINIDENFDED---NDENVDKNVDKNVDKNVDKNDDEDDGEDDGEDDG 136
Query: 443 TKASDHDRPETSSPD 457
+HD + D
Sbjct: 137 EDDGEHDGEDDGEDD 151
Score = 63 (27.2 bits), Expect = 2.9e-05, Sum P(2) = 2.9e-05
Identities = 32/148 (21%), Positives = 61/148 (41%)
Query: 326 KEDESVQ-SVEKNEPTKSPENL---KDNETGNKESHDPTNF---GVVTEEDRKADQEALE 378
KE+ V + N +K+ +N K + + K+ D N E ++K ++ LE
Sbjct: 169 KEESDVSDNHHNNRKSKNIKNSIRSKSSNSKTKKEDDDNNIHCNNSSQENEQKRKEQLLE 228
Query: 379 KLTCMVEERLKTNXXXXXXXQTTADGSGISNSELPAKARDGDSDVDMIRNDIA----EDK 434
E + + T++D + +N ++ S +ND + E++
Sbjct: 229 NKDNKKEGKNTNSSKVKKRYHTSSDENDRNNDNTSSEEERTKSRKKKHKNDNSDKKNENR 288
Query: 435 LDDETTSDTKASDHDRPETSSPDRSRVH 462
+ D ++S + +SD E SS D R H
Sbjct: 289 VVDYSSSSSSSSDASN-EYSSSDEERDH 315
Score = 60 (26.2 bits), Expect = 6.0e-05, Sum P(2) = 6.0e-05
Identities = 24/134 (17%), Positives = 55/134 (41%)
Query: 329 ESVQSVEKNEPTKSPENLKDNETGNKESHDPTNFGVVTEEDRKADQEALEKLTCMVEERL 388
E+ + ++ + T S + K T + E+ D N +EE+R ++ K +
Sbjct: 228 ENKDNKKEGKNTNSSKVKKRYHTSSDEN-DRNNDNTSSEEERTKSRKKKHKN----DNSD 282
Query: 389 KTNXXXXXXXQTTADGSGISNSELPAKARDGDSDVDMIRNDIAEDKLDDETTSDTKASDH 448
K N +++ S +++E + + D IR ++ ++ ++D+
Sbjct: 283 KKNENRVVDYSSSSSSSSDASNEYSSSDEERDHKKRKIRKTNRSRRISRSSSESNSSTDN 342
Query: 449 DRPETSSPDRSRVH 462
D+ TS +V+
Sbjct: 343 DKRGTSRSSEEKVY 356
Score = 55 (24.4 bits), Expect = 0.00024, Sum P(3) = 0.00024
Identities = 35/194 (18%), Positives = 73/194 (37%)
Query: 273 VLRALRLLNKFNIDGQELMLKVDQATREYLERYVDXXXXXXXXXXXXQDAGAGKE-DESV 331
V R +++N ID + K + T ++ +D D K D++V
Sbjct: 62 VKRKSKVINDNKIDNENKNTKRKKKTNGDVDINIDENFDED------NDENVDKNVDKNV 115
Query: 332 -QSVEKNEPTKSPENLKDNETGNKESHDPTNFGVVTEEDRKADQEALEKLTCMVEER-LK 389
++V+KN+ E+ +++ + HD + G ++ K + K + EE +
Sbjct: 116 DKNVDKNDDEDDGEDDGEDDGEDDGEHDGEDDGEDDSDEDKHENIPKNKADTLKEESDVS 175
Query: 390 TNXXXXXXXQTTADGSGISNSELPAKARDGDSDVDMIRNDIAEDKLDDETTSDTKASDHD 449
N + + +S K D D+++ + ++ E + K + +
Sbjct: 176 DNHHNNRKSKNIKNSIRSKSSNSKTKKEDDDNNIHCNNSSQENEQKRKEQLLENKDNKKE 235
Query: 450 RPET-SSPDRSRVH 462
T SS + R H
Sbjct: 236 GKNTNSSKVKKRYH 249
Score = 54 (24.1 bits), Expect = 0.00030, Sum P(3) = 0.00030
Identities = 27/146 (18%), Positives = 55/146 (37%)
Query: 320 QDAGAGKEDESV-QSVEKN--EPTKSPENLKDNETGNKESHDPTNFGVVTEEDRKADQEA 376
+D G DE +++ KN + K ++ DN N++S + N + K +E
Sbjct: 145 EDDGEDDSDEDKHENIPKNKADTLKEESDVSDNHHNNRKSKNIKNSIRSKSSNSKTKKED 204
Query: 377 LEK-LTC---MVEERLKTNXXXXXXXQTTADGSGISNSELPAKARDGDSDVDMIRNDIAE 432
+ + C E K +G ++S++ + + D RN+
Sbjct: 205 DDNNIHCNNSSQENEQKRKEQLLENKDNKKEGKNTNSSKVKKRYHTSSDEND--RNNDNT 262
Query: 433 DKLDDETTSDTKASDHDRPETSSPDR 458
++ T S K +D + + +R
Sbjct: 263 SSEEERTKSRKKKHKNDNSDKKNENR 288
Score = 42 (19.8 bits), Expect = 2.5e-05, Sum P(3) = 2.5e-05
Identities = 11/51 (21%), Positives = 24/51 (47%)
Query: 616 DNAVNGSLAEESAVESKGMDVEHDYHDDSIRENHMAGDPSSQNGNGDESTN 666
D + + S + +++ E D E D+ IR+ + + S + + ST+
Sbjct: 291 DYSSSSSSSSDASNEYSSSDEERDHKKRKIRKTNRSRRISRSSSESNSSTD 341
>RGD|621696 [details] [associations]
symbol:Srek1 "splicing regulatory glutamine/lysine-rich protein
1" species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005634 "nucleus" evidence=IEA;ISO] [GO:0005681 "spliceosomal
complex" evidence=IEA] [GO:0005739 "mitochondrion"
evidence=IEA;ISO] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0043231 "intracellular
membrane-bounded organelle" evidence=ISO] [GO:0005730 "nucleolus"
evidence=ISO] InterPro:IPR000504 InterPro:IPR012677 PROSITE:PS50102
SMART:SM00360 RGD:621696 GO:GO:0008380 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0003676 KO:K13165 CTD:140890
HOVERGEN:HBG079174 OrthoDB:EOG4K3KWS EMBL:AF234765 IPI:IPI00202759
RefSeq:NP_064477.1 UniGene:Rn.161755 ProteinModelPortal:Q9JKL7
STRING:Q9JKL7 PRIDE:Q9JKL7 GeneID:56763 KEGG:rno:56763
UCSC:RGD:621696 eggNOG:NOG310672 InParanoid:Q9JKL7 NextBio:611146
Genevestigator:Q9JKL7 GermOnline:ENSRNOG00000032735 Uniprot:Q9JKL7
Length = 494
Score = 115 (45.5 bits), Expect = 3.1e-05, Sum P(2) = 3.1e-05
Identities = 26/73 (35%), Positives = 42/73 (57%)
Query: 757 VNSKEEKSDAERERSRRLH-DRSSQREKDRSDE-DNNRTRDEHKEKILDRDRDREHGLDK 814
V +E + + ERE+ R +R ++KDR E D+ + RD+ KEK D+D++RE D+
Sbjct: 275 VKEREREKEKEREKEREKDKERGKNKDKDREKEKDHEKERDKEKEKEQDKDKEREK--DR 332
Query: 815 VKTPDNKKLLDAK 827
K D K+ + K
Sbjct: 333 SKEADEKRKKEKK 345
Score = 64 (27.6 bits), Expect = 3.1e-05, Sum P(2) = 3.1e-05
Identities = 21/58 (36%), Positives = 27/58 (46%)
Query: 221 VYVGKI-APTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRAL 277
VYVG + + T +D +L K G VK + A + P F F EF V RAL
Sbjct: 71 VYVGNLNSQTTTADQLLEFFKQVGEVKFVRMAGDETQ--PTRFAFVEFADQNSVPRAL 126
>UNIPROTKB|Q9JKL7 [details] [associations]
symbol:Srek1 "Splicing regulatory glutamine/lysine-rich
protein 1" species:10116 "Rattus norvegicus" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
PROSITE:PS50102 SMART:SM00360 RGD:621696 GO:GO:0008380
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0005681
GO:GO:0003676 KO:K13165 CTD:140890 HOVERGEN:HBG079174
OrthoDB:EOG4K3KWS EMBL:AF234765 IPI:IPI00202759 RefSeq:NP_064477.1
UniGene:Rn.161755 ProteinModelPortal:Q9JKL7 STRING:Q9JKL7
PRIDE:Q9JKL7 GeneID:56763 KEGG:rno:56763 UCSC:RGD:621696
eggNOG:NOG310672 InParanoid:Q9JKL7 NextBio:611146
Genevestigator:Q9JKL7 GermOnline:ENSRNOG00000032735 Uniprot:Q9JKL7
Length = 494
Score = 115 (45.5 bits), Expect = 3.1e-05, Sum P(2) = 3.1e-05
Identities = 26/73 (35%), Positives = 42/73 (57%)
Query: 757 VNSKEEKSDAERERSRRLH-DRSSQREKDRSDE-DNNRTRDEHKEKILDRDRDREHGLDK 814
V +E + + ERE+ R +R ++KDR E D+ + RD+ KEK D+D++RE D+
Sbjct: 275 VKEREREKEKEREKEREKDKERGKNKDKDREKEKDHEKERDKEKEKEQDKDKEREK--DR 332
Query: 815 VKTPDNKKLLDAK 827
K D K+ + K
Sbjct: 333 SKEADEKRKKEKK 345
Score = 64 (27.6 bits), Expect = 3.1e-05, Sum P(2) = 3.1e-05
Identities = 21/58 (36%), Positives = 27/58 (46%)
Query: 221 VYVGKI-APTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRAL 277
VYVG + + T +D +L K G VK + A + P F F EF V RAL
Sbjct: 71 VYVGNLNSQTTTADQLLEFFKQVGEVKFVRMAGDETQ--PTRFAFVEFADQNSVPRAL 126
>UNIPROTKB|B4DH15 [details] [associations]
symbol:DDX23 "cDNA FLJ54028, highly similar to Probable
ATP-dependent RNA helicase DDX23 (EC 3.6.1.-)" species:9606 "Homo
sapiens" [GO:0004386 "helicase activity" evidence=IEA]
GO:GO:0004386 UniGene:Hs.130098 HGNC:HGNC:17347 EMBL:AC117498
EMBL:AK294877 IPI:IPI01021148 STRING:B4DH15 Ensembl:ENST00000547135
Uniprot:B4DH15
Length = 108
Score = 86 (35.3 bits), Expect = 3.8e-05, Sum P(2) = 3.8e-05
Identities = 19/54 (35%), Positives = 30/54 (55%)
Query: 755 SNVNSKEEKSDAERERSRRLHDRSSQREKDRSDEDNNRTRDEHKEKILDRDRDR 808
S S+ AERER + +R +E+DR+ +D +R +D H+ D+DR R
Sbjct: 57 SRSRSRSRSKSAERERRHK--ERERDKERDRNKKDRDRDKDGHRR---DKDRKR 105
Score = 85 (35.0 bits), Expect = 4.8e-05, Sum P(2) = 4.8e-05
Identities = 19/57 (33%), Positives = 34/57 (59%)
Query: 759 SKEEKSDAERERSRRLHDRSSQREKDRSDEDNNRTRDEHKEKILDRDRDRE-HGLDK 814
S++ + R RSR +S++RE+ + + ++ RD +K+ DRDRD++ H DK
Sbjct: 49 SRDRRRGGSRSRSRS-RSKSAERERRHKERERDKERDRNKK---DRDRDKDGHRRDK 101
Score = 45 (20.9 bits), Expect = 3.8e-05, Sum P(2) = 3.8e-05
Identities = 9/27 (33%), Positives = 14/27 (51%)
Query: 434 KLDDETTSDTKASDHDRPETSSPDRSR 460
+L D+ D S +R + +PDR R
Sbjct: 4 ELADKKDRDASPSKEERKRSRTPDRER 30
Score = 40 (19.1 bits), Expect = 0.00012, Sum P(2) = 0.00012
Identities = 9/29 (31%), Positives = 13/29 (44%)
Query: 432 EDKLDDETTSDTKASDHDRPETSSPDRSR 460
E++ T + D DR + S DR R
Sbjct: 18 EERKRSRTPDRERDRDRDRKSSPSKDRKR 46
>FB|FBgn0027841 [details] [associations]
symbol:CstF-64 "Cleavage stimulation factor 64 kilodalton
subunit" species:7227 "Drosophila melanogaster" [GO:0006379 "mRNA
cleavage" evidence=ISS;NAS] [GO:0005848 "mRNA cleavage stimulating
factor complex" evidence=ISS;NAS] [GO:0003729 "mRNA binding"
evidence=ISS] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0022008
"neurogenesis" evidence=IMP] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0022008
GO:GO:0000166 GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0006379
InterPro:IPR025742 InterPro:IPR026896 Pfam:PF14327 Pfam:PF14304
HSSP:P33240 GO:GO:0005848 EMBL:BT004860 ProteinModelPortal:Q86NL1
SMR:Q86NL1 STRING:Q86NL1 PRIDE:Q86NL1 FlyBase:FBgn0027841
InParanoid:Q86NL1 OrthoDB:EOG4FBG8R ChiTaRS:CstF-64
ArrayExpress:Q86NL1 Bgee:Q86NL1 Uniprot:Q86NL1
Length = 437
Score = 131 (51.2 bits), Expect = 3.8e-05, P = 3.8e-05
Identities = 32/86 (37%), Positives = 44/86 (51%)
Query: 215 EKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVL 274
+K V+VG I A + + + G V S K +G PKGFGFCE++ E L
Sbjct: 12 DKSMRSVFVGNIPYEATEEKLKEIFSEVGPVLSLKLVFDRESGKPKGFGFCEYKDQETAL 71
Query: 275 RALRLLNKFNIDGQELMLKVDQATRE 300
A+R LN + I G+ L +VD A E
Sbjct: 72 SAMRNLNGYEIGGRTL--RVDNACTE 95
>GENEDB_PFALCIPARUM|PFB0680w [details] [associations]
symbol:PFB0680w "hypothetical protein"
species:5833 "Plasmodium falciparum" [GO:0003674
"molecular_function" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] [GO:0020011 "apicoplast" evidence=RCA] EMBL:AE001362
GenomeReviews:AE001362_GR RefSeq:XP_001349654.2
ProteinModelPortal:O96229 IntAct:O96229 MINT:MINT-1641190
EnsemblProtists:PFB0680w:mRNA GeneID:812736 KEGG:pfa:PFB0680w
EuPathDB:PlasmoDB:PF3D7_0214900 ProtClustDB:CLSZ2848507
Uniprot:O96229
Length = 950
Score = 110 (43.8 bits), Expect = 4.1e-05, Sum P(2) = 4.1e-05
Identities = 24/76 (31%), Positives = 50/76 (65%)
Query: 752 KRISNVNSKEEKS-DAERERSRRLH-DRSSQREKDRS-DEDNNRTRDEHKEKILD--RDR 806
K N ++K+EKS D E+E+S+ + ++S +EK++S D++ + +D+ KEK D +++
Sbjct: 320 KNGKNKDTKKEKSKDTEKEKSKDIEKEKSKDKEKEKSKDKEKEKGKDKEKEKSKDIEKEK 379
Query: 807 DREHGLDKVKTPDNKK 822
+++ ++K K+ D K
Sbjct: 380 EKDKDIEKEKSKDTAK 395
Score = 110 (43.8 bits), Expect = 4.1e-05, Sum P(2) = 4.1e-05
Identities = 29/111 (26%), Positives = 57/111 (51%)
Query: 752 KRISNVNSKEEKSDAERERSR-RLHDRSSQREKDRS-DEDNNRTRDEHKEKILDRDRDRE 809
K S KE+ D E+E+S+ + ++S +EK++ D++ +++D KEK D+D ++E
Sbjct: 329 KEKSKDTEKEKSKDIEKEKSKDKEKEKSKDKEKEKGKDKEKEKSKDIEKEKEKDKDIEKE 388
Query: 810 HGLDKVKTPDNKKLLDAKQLIDMIP---KTKEELFSYEINWAVYDKHELHE 857
D K + K ++ ++ DM K +E + DK ++H+
Sbjct: 389 KSKDTAKEKEKDKDIEKEKSKDMEKLKNKQNDEKKKDDNEKKKNDKQDIHD 439
Score = 97 (39.2 bits), Expect = 0.00095, Sum P(2) = 0.00095
Identities = 30/106 (28%), Positives = 52/106 (49%)
Query: 752 KRISNVNSKEEKSDAERERSRRLHDRSSQREKDRSDEDNNRTRDEHKEKILDRDRDREHG 811
K S KE+ D E+E+S+ D ++EKD+ D + +++D KEK D+D ++E
Sbjct: 353 KEKSKDKEKEKGKDKEKEKSK---DIEKEKEKDK-DIEKEKSKDTAKEKEKDKDIEKEKS 408
Query: 812 LDKVKTPDNKKLLDAKQLIDMIPKTKEELFSYEINWAVYDKHELHE 857
D K + + D K+ D K ++ ++ N D E+ E
Sbjct: 409 KDMEKLKNKQN--DEKKKDDNEKKKNDKQDIHDDNDDENDMEEIEE 452
Score = 75 (31.5 bits), Expect = 4.1e-05, Sum P(2) = 4.1e-05
Identities = 34/136 (25%), Positives = 64/136 (47%)
Query: 320 QDAGAG-KEDESVQSVEK-NEPTKSPENLKDNETGNKESHDPTNFGVVTEEDRKADQEAL 377
+D G KE E + EK ++ K EN K ++ +E+ + V EE++K+D +
Sbjct: 173 KDVKEGVKELEEKKKEEKISDDHKVEENKKSDDHKVEENKKSDDHKV--EENKKSDDHKI 230
Query: 378 EKLTCMVEERLKTNXXXXXXXQTTADGSGISNSELPAKARDGDSDVDMIRNDIAEDKLDD 437
E++ VEE + + + + + + N + + D SD D + +D+ EDK ++
Sbjct: 231 EEVK-KVEEH-EEDEEEDKKEKKSENKNKDENKDENDEDNDEISDEDEVDDDVEEDKNEN 288
Query: 438 ETTSDTKASDHDRPET 453
+ D D+ ET
Sbjct: 289 DDIDD------DKKET 298
Score = 68 (29.0 bits), Expect = 0.00021, Sum P(2) = 0.00021
Identities = 32/138 (23%), Positives = 55/138 (39%)
Query: 325 GKEDESVQSVEKNEPTKSPENLKDNETGNKESHDPTNFGVVTEEDRKADQEALEKLTCM- 383
GK+D S + E + K E +K+ E KE + V EE++K+D +E+
Sbjct: 160 GKQDISNSNAENKKDVK--EGVKELEEKKKEEKISDDHKV--EENKKSDDHKVEENKKSD 215
Query: 384 ---VEERLKTNXXXXXXXQTTADGSGISNSELPAKARDG-DSDVDMIRNDIAEDKLDDET 439
VEE K++ + + + K + + D + ND D++ DE
Sbjct: 216 DHKVEENKKSDDHKIEEVKKVEEHEEDEEEDKKEKKSENKNKDENKDENDEDNDEISDED 275
Query: 440 TSDTKASDHDRPETSSPD 457
D + D+ E D
Sbjct: 276 EVDDDVEE-DKNENDDID 292
>UNIPROTKB|O96229 [details] [associations]
symbol:RON6 "Rhoptry neck protein 6" species:36329
"Plasmodium falciparum 3D7" [GO:0003674 "molecular_function"
evidence=ND] [GO:0008150 "biological_process" evidence=ND]
[GO:0020011 "apicoplast" evidence=RCA] EMBL:AE001362
GenomeReviews:AE001362_GR RefSeq:XP_001349654.2
ProteinModelPortal:O96229 IntAct:O96229 MINT:MINT-1641190
EnsemblProtists:PFB0680w:mRNA GeneID:812736 KEGG:pfa:PFB0680w
EuPathDB:PlasmoDB:PF3D7_0214900 ProtClustDB:CLSZ2848507
Uniprot:O96229
Length = 950
Score = 110 (43.8 bits), Expect = 4.1e-05, Sum P(2) = 4.1e-05
Identities = 24/76 (31%), Positives = 50/76 (65%)
Query: 752 KRISNVNSKEEKS-DAERERSRRLH-DRSSQREKDRS-DEDNNRTRDEHKEKILD--RDR 806
K N ++K+EKS D E+E+S+ + ++S +EK++S D++ + +D+ KEK D +++
Sbjct: 320 KNGKNKDTKKEKSKDTEKEKSKDIEKEKSKDKEKEKSKDKEKEKGKDKEKEKSKDIEKEK 379
Query: 807 DREHGLDKVKTPDNKK 822
+++ ++K K+ D K
Sbjct: 380 EKDKDIEKEKSKDTAK 395
Score = 110 (43.8 bits), Expect = 4.1e-05, Sum P(2) = 4.1e-05
Identities = 29/111 (26%), Positives = 57/111 (51%)
Query: 752 KRISNVNSKEEKSDAERERSR-RLHDRSSQREKDRS-DEDNNRTRDEHKEKILDRDRDRE 809
K S KE+ D E+E+S+ + ++S +EK++ D++ +++D KEK D+D ++E
Sbjct: 329 KEKSKDTEKEKSKDIEKEKSKDKEKEKSKDKEKEKGKDKEKEKSKDIEKEKEKDKDIEKE 388
Query: 810 HGLDKVKTPDNKKLLDAKQLIDMIP---KTKEELFSYEINWAVYDKHELHE 857
D K + K ++ ++ DM K +E + DK ++H+
Sbjct: 389 KSKDTAKEKEKDKDIEKEKSKDMEKLKNKQNDEKKKDDNEKKKNDKQDIHD 439
Score = 97 (39.2 bits), Expect = 0.00095, Sum P(2) = 0.00095
Identities = 30/106 (28%), Positives = 52/106 (49%)
Query: 752 KRISNVNSKEEKSDAERERSRRLHDRSSQREKDRSDEDNNRTRDEHKEKILDRDRDREHG 811
K S KE+ D E+E+S+ D ++EKD+ D + +++D KEK D+D ++E
Sbjct: 353 KEKSKDKEKEKGKDKEKEKSK---DIEKEKEKDK-DIEKEKSKDTAKEKEKDKDIEKEKS 408
Query: 812 LDKVKTPDNKKLLDAKQLIDMIPKTKEELFSYEINWAVYDKHELHE 857
D K + + D K+ D K ++ ++ N D E+ E
Sbjct: 409 KDMEKLKNKQN--DEKKKDDNEKKKNDKQDIHDDNDDENDMEEIEE 452
Score = 75 (31.5 bits), Expect = 4.1e-05, Sum P(2) = 4.1e-05
Identities = 34/136 (25%), Positives = 64/136 (47%)
Query: 320 QDAGAG-KEDESVQSVEK-NEPTKSPENLKDNETGNKESHDPTNFGVVTEEDRKADQEAL 377
+D G KE E + EK ++ K EN K ++ +E+ + V EE++K+D +
Sbjct: 173 KDVKEGVKELEEKKKEEKISDDHKVEENKKSDDHKVEENKKSDDHKV--EENKKSDDHKI 230
Query: 378 EKLTCMVEERLKTNXXXXXXXQTTADGSGISNSELPAKARDGDSDVDMIRNDIAEDKLDD 437
E++ VEE + + + + + + N + + D SD D + +D+ EDK ++
Sbjct: 231 EEVK-KVEEH-EEDEEEDKKEKKSENKNKDENKDENDEDNDEISDEDEVDDDVEEDKNEN 288
Query: 438 ETTSDTKASDHDRPET 453
+ D D+ ET
Sbjct: 289 DDIDD------DKKET 298
Score = 68 (29.0 bits), Expect = 0.00021, Sum P(2) = 0.00021
Identities = 32/138 (23%), Positives = 55/138 (39%)
Query: 325 GKEDESVQSVEKNEPTKSPENLKDNETGNKESHDPTNFGVVTEEDRKADQEALEKLTCM- 383
GK+D S + E + K E +K+ E KE + V EE++K+D +E+
Sbjct: 160 GKQDISNSNAENKKDVK--EGVKELEEKKKEEKISDDHKV--EENKKSDDHKVEENKKSD 215
Query: 384 ---VEERLKTNXXXXXXXQTTADGSGISNSELPAKARDG-DSDVDMIRNDIAEDKLDDET 439
VEE K++ + + + K + + D + ND D++ DE
Sbjct: 216 DHKVEENKKSDDHKIEEVKKVEEHEEDEEEDKKEKKSENKNKDENKDENDEDNDEISDED 275
Query: 440 TSDTKASDHDRPETSSPD 457
D + D+ E D
Sbjct: 276 EVDDDVEE-DKNENDDID 292
>UNIPROTKB|J9P250 [details] [associations]
symbol:RBMX2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00600000084414 OMA:HRHKRAR EMBL:AAEX03026906
ProteinModelPortal:J9P250 Ensembl:ENSCAFT00000043973 Uniprot:J9P250
Length = 341
Score = 94 (38.1 bits), Expect = 4.5e-05, Sum P(2) = 4.5e-05
Identities = 21/54 (38%), Positives = 32/54 (59%)
Query: 759 SKEEKSDAERERSRRLHDR-SSQREKDRSDEDNNRTRDEHKEKILDRDRDREHG 811
S+ E + E + + H+R SS R ++R E+ NR R+ +E+ DRDRDR G
Sbjct: 238 SRAEDREREPRKEKPRHERRSSSRREER--EEKNRERERQRERERDRDRDRARG 289
Score = 80 (33.2 bits), Expect = 4.5e-05, Sum P(2) = 4.5e-05
Identities = 32/147 (21%), Positives = 53/147 (36%)
Query: 216 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLR 275
K +++G + ++ V G + + + G KGF F +E +
Sbjct: 33 KDSAWIFLGGLPYELTEGDIICVFSQYGEIVNINLVRDKKTGKSKGFCFLCYEDQRSTIL 92
Query: 276 ALRLLNKFNIDGQELMLKVDQATREYLERYVDXXXXXXXXXXXXQDAGAGKEDESVQSVE 335
A+ N I G+ + +VD + Y R Q+ G G SV S E
Sbjct: 93 AVDNFNGIKIKGRTI--RVDHVSN-Y--RAPKDSEEMDDVTKELQEKGCGAHTPSVSSSE 147
Query: 336 KNEPTKSPENLK-DNETGNKESHDPTN 361
+E K P+ K D + + D N
Sbjct: 148 GSEDDKPPKKYKKDKKEKKRRKKDKEN 174
>WB|WBGene00000774 [details] [associations]
symbol:cpf-2 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0009792
"embryo development ending in birth or egg hatching" evidence=IMP]
[GO:0000003 "reproduction" evidence=IMP] [GO:0016246 "RNA
interference" evidence=IMP] [GO:0006898 "receptor-mediated
endocytosis" evidence=IMP] [GO:0040027 "negative regulation of
vulval development" evidence=IMP] [GO:0016607 "nuclear speck"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0009792 GO:GO:0006898
GO:GO:0016246 GO:GO:0000166 GO:GO:0016607 Gene3D:3.30.70.330
GO:GO:0000003 GO:GO:0003676 GO:GO:0040027 eggNOG:COG0724 KO:K14407
InterPro:IPR025742 InterPro:IPR026896 Pfam:PF14327 Pfam:PF14304
GeneTree:ENSGT00550000074641 HSSP:P33240 EMBL:Z83230 PIR:T22767
RefSeq:NP_499734.1 ProteinModelPortal:O45577 SMR:O45577
DIP:DIP-27144N IntAct:O45577 MINT:MINT-1049050 STRING:O45577
PaxDb:O45577 EnsemblMetazoa:F56A8.6.1 EnsemblMetazoa:F56A8.6.2
GeneID:176742 KEGG:cel:CELE_F56A8.6 UCSC:F56A8.6.1 CTD:176742
WormBase:F56A8.6 HOGENOM:HOG000214372 InParanoid:O45577 OMA:VENPYGE
NextBio:893824 Uniprot:O45577
Length = 336
Score = 125 (49.1 bits), Expect = 6.2e-05, Sum P(2) = 6.2e-05
Identities = 40/146 (27%), Positives = 62/146 (42%)
Query: 215 EKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVL 274
++ Q V+VG I+ D + S+ G V S K G PKG+GF EF +
Sbjct: 14 DRSQRSVFVGNISYDVSEDTIRSIFSKAGNVLSIKMVHDRETGKPKGYGFIEFPDIQTAE 73
Query: 275 RALRLLNKFNIDGQELMLKVDQATREY-LERYVDXXXXXXXXXXX--XQDAGAGKEDESV 331
A+R LN + + G+ +L+VD A +E + + AGK E +
Sbjct: 74 VAIRNLNGYELSGR--ILRVDSAAGGMNMEEFGSSSNAPAPVEENPYGPECDAGKAPERI 131
Query: 332 -QSVEKNEPTKSPENLKDNETGNKES 356
Q+V P K E +K + K +
Sbjct: 132 SQTVASLAPEKMFELMKQLQESLKNN 157
Score = 45 (20.9 bits), Expect = 6.2e-05, Sum P(2) = 6.2e-05
Identities = 8/41 (19%), Positives = 22/41 (53%)
Query: 788 EDNNRTRDEHKEKILDRDRDREHGLDKVKTPDNKKLLDAKQ 828
+ N++ ++ E ++ + EH L + D +K+++ +Q
Sbjct: 289 QQNHQEEQQNAELLMQVMQLSEHDLQMLPAGDREKIIELRQ 329
>UNIPROTKB|P09406 [details] [associations]
symbol:snrnp70 "U1 small nuclear ribonucleoprotein 70 kDa"
species:8355 "Xenopus laevis" [GO:0000398 "mRNA splicing, via
spliceosome" evidence=ISS] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005681 "spliceosomal complex" evidence=ISS] [GO:0043484
"regulation of RNA splicing" evidence=ISS] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 GO:GO:0016607 Gene3D:3.30.70.330 GO:GO:0005681
GO:GO:0003723 GO:GO:0043484 GO:GO:0000398 InterPro:IPR022023
Pfam:PF12220 EMBL:X12430 PIR:S02016 UniGene:Xl.5366
ProteinModelPortal:P09406 Xenbase:XB-GENE-992825 HOVERGEN:HBG012300
Uniprot:P09406
Length = 471
Score = 115 (45.5 bits), Expect = 6.9e-05, Sum P(2) = 6.9e-05
Identities = 25/83 (30%), Positives = 46/83 (55%)
Query: 760 KEEKSDAERERSRRLHDRSSQREKDRS-DEDNNRTRDEHKEKILDRDRDREHGLDKVKTP 818
K+ D +R+R RR R REKDR D D R RD +E+ D R+R+ G D+ +
Sbjct: 365 KDRDKDRDRDRDRRRSHRDRDREKDRDRDRDRRRDRDRDRERDKDHKRERDRG-DRSEKR 423
Query: 819 DNKKLLDAKQLIDMIPKTKEELF 841
+ +++ D +++ +T ++++
Sbjct: 424 E-ERVPDNGMVMEQAEETSQDMY 445
Score = 115 (45.5 bits), Expect = 6.9e-05, Sum P(2) = 6.9e-05
Identities = 37/107 (34%), Positives = 52/107 (48%)
Query: 727 EELQAAQPHVSGANPPNLAAAAEFAKRISNVNSKEEKSDAERERSR-RLHDRSS---QRE 782
E ++A P A P + A + I + K+E + RER R R DR R+
Sbjct: 312 ERVEAEVPEADDA-PQDDAQIGDLG--IDGIELKQEPEEKSRERDRERDRDREKGEKDRD 368
Query: 783 KDRS-DEDNNRT-RDEHKEKILDRDRDR--EHGLDKVKTPDNKKLLD 825
KDR D D R+ RD +EK DRDRDR + D+ + D+K+ D
Sbjct: 369 KDRDRDRDRRRSHRDRDREKDRDRDRDRRRDRDRDRERDKDHKRERD 415
Score = 60 (26.2 bits), Expect = 6.9e-05, Sum P(2) = 6.9e-05
Identities = 11/41 (26%), Positives = 24/41 (58%)
Query: 256 NGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVDQ 296
+G P+G+ F E+E + A + + IDG+ +++ V++
Sbjct: 143 SGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDVER 183
>UNIPROTKB|K7GQZ8 [details] [associations]
symbol:LOC100515986 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
Gene3D:3.30.70.330 GeneTree:ENSGT00550000074641 EMBL:CU861981
Ensembl:ENSSSCT00000036547 Uniprot:K7GQZ8
Length = 88
Score = 106 (42.4 bits), Expect = 7.0e-05, P = 7.0e-05
Identities = 26/77 (33%), Positives = 37/77 (48%)
Query: 224 GKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKF 283
G I A + + + G V S++ G PKG+GFCE++ E L A+R LN
Sbjct: 2 GNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGR 61
Query: 284 NIDGQELMLKVDQATRE 300
G+ L +VD A E
Sbjct: 62 EFSGRAL--RVDNAASE 76
>UNIPROTKB|D6RFF0 [details] [associations]
symbol:LARP7 "La-related protein 7" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0006396 "RNA processing"
evidence=IEA] [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005737 "cytoplasm"
evidence=IDA] InterPro:IPR000504 InterPro:IPR002344
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00302 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0000166
Gene3D:3.30.70.330 Gene3D:1.10.10.10 InterPro:IPR011991
GO:GO:0003723 GO:GO:0006396 GO:GO:0030529 InterPro:IPR006630
PROSITE:PS50961 Pfam:PF05383 SMART:SM00715 HOGENOM:HOG000113284
HGNC:HGNC:24912 ChiTaRS:LARP7 EMBL:AC106864 IPI:IPI00966774
ProteinModelPortal:D6RFF0 SMR:D6RFF0 Ensembl:ENST00000505034
ArrayExpress:D6RFF0 Bgee:D6RFF0 Uniprot:D6RFF0
Length = 299
Score = 105 (42.0 bits), Expect = 9.7e-05, Sum P(2) = 9.7e-05
Identities = 30/128 (23%), Positives = 53/128 (41%)
Query: 215 EKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVL 274
++ + VYV + + ++ V CG V Y S G PKGF F EFE+ E
Sbjct: 121 DEDERTVYVELLPKNVNHSWIERVFGKCGNVVYISIPHYKSTGDPKGFAFVEFETKEQAA 180
Query: 275 RALRLLNKFNIDGQELMLKVDQATREYLERYVDXXXXXXXXXXXXQDAGAGKEDESVQSV 334
+A+ LN +E K + + + + G K+++++Q+
Sbjct: 181 KAIEFLNN---PPEEAPRKPGIFPKTVKNKPIPALRVVEEKKKKKKKKGRMKKEDNIQAK 237
Query: 335 EKNEPTKS 342
E+N T +
Sbjct: 238 EENMDTSN 245
Score = 63 (27.2 bits), Expect = 9.7e-05, Sum P(2) = 9.7e-05
Identities = 17/71 (23%), Positives = 33/71 (46%)
Query: 752 KRISNVNSKEEKSDAERERSRRLHDRSSQREKDRSDEDNNRTRDEHKEKILDRDRDREHG 811
K+ N+ +KEE D ++ + S+ + SD ++ + + +K RDR
Sbjct: 229 KKEDNIQAKEENMDTSNTSISKM--KRSRPTSEGSDIESTEPQKQCSKKKKKRDRVEASS 286
Query: 812 LDKVKTPDNKK 822
L +V+T K+
Sbjct: 287 LPEVRTGKRKR 297
>MGI|MGI:1919709 [details] [associations]
symbol:Htatsf1 "HIV TAT specific factor 1" species:10090
"Mus musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003674 "molecular_function" evidence=ND] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
MGI:MGI:1919709 GO:GO:0005634 GO:GO:0006355 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0006351 GO:GO:0003723 eggNOG:NOG317500
GeneTree:ENSGT00390000009902 KO:K13093 EMBL:AL672263 CTD:27336
HOGENOM:HOG000049201 HOVERGEN:HBG059454 OrthoDB:EOG4BRWKT
EMBL:AK005527 EMBL:AK011234 EMBL:AK049495 EMBL:BC037711
EMBL:BC114588 EMBL:BC114589 IPI:IPI00221566 IPI:IPI00775823
RefSeq:NP_082518.1 RefSeq:NP_083647.1 UniGene:Mm.2152
ProteinModelPortal:Q8BGC0 SMR:Q8BGC0 DIP:DIP-46367N STRING:Q8BGC0
PhosphoSite:Q8BGC0 PaxDb:Q8BGC0 PRIDE:Q8BGC0
Ensembl:ENSMUST00000088652 Ensembl:ENSMUST00000114751 GeneID:72459
KEGG:mmu:72459 UCSC:uc009tgv.2 InParanoid:Q8BGC0 NextBio:336274
Bgee:Q8BGC0 CleanEx:MM_HTATSF1 Genevestigator:Q8BGC0
GermOnline:ENSMUSG00000067873 Uniprot:Q8BGC0
Length = 757
Score = 77 (32.2 bits), Expect = 0.00011, Sum P(3) = 0.00011
Identities = 24/88 (27%), Positives = 41/88 (46%)
Query: 752 KRISNVNSKEEKSDAERERSRRLHDRSSQREKDRSDEDNNRTRDEHKEKILDRDRDREHG 811
K + + KEE +D + +L D S ++E D D D + D+ +K+ + D E
Sbjct: 657 KECEDADDKEEDNDIDE----KLFDDSDEKE-DEEDTDGKKD-DDASDKVFE-DNSNEKL 709
Query: 812 LDKVKTPDNKKLLDAKQLIDMIPKTKEE 839
D+ + P N+KL D + KE+
Sbjct: 710 FDEEEGP-NEKLFDDSDERGTVGNVKED 736
Score = 74 (31.1 bits), Expect = 0.00011, Sum P(3) = 0.00011
Identities = 31/147 (21%), Positives = 55/147 (37%)
Query: 320 QDAGAGKEDESVQSVEKNEPTKSPENLKDNETGNKESHDPTNF-----GVVTEEDRK-AD 373
+D GKE E S++K E + ++ K+S D ++ GV + D+ +D
Sbjct: 520 EDNDLGKESEGEDSLKKESEDDDSEEESEEDSSEKQSQDGSDKEIEENGVKKDVDQDVSD 579
Query: 374 QEALEKLTCMVEERLKTNXXXXXXXQTTADGSGISNS---ELPAKARDGDSDVDMIRNDI 430
+E E + EE + D G + K +GD D + + +
Sbjct: 580 KEFPEDVEKESEENETDKSEFDEGSERVLDEEGSEREFEEDSDEKEEEGDDDEEEV---V 636
Query: 431 AEDKLDDETTSDTKASDHDRPETSSPD 457
E DD++ + + D E D
Sbjct: 637 YERVFDDDSDDIEEEEEADEKECEDAD 663
Score = 72 (30.4 bits), Expect = 0.00011, Sum P(3) = 0.00011
Identities = 25/87 (28%), Positives = 40/87 (45%)
Query: 215 EKPQTKVYVGKIAPTADSDFVLSVLKVCGTV------KSWKRAQYPSN-GTPKGFGFCEF 267
E T VYV + P D + ++ G + + +K Y + G KG G C +
Sbjct: 130 EDRNTNVYVSGLPPDITVDEFIQLMSKFGIIMRDPQTEEFKVKLYKDDQGNLKGDGLCCY 189
Query: 268 ESAEGVLRALRLLNKFNIDGQELMLKV 294
E V AL+LL++ I G +L ++V
Sbjct: 190 LKKESVELALKLLDEDEIRGYKLHVEV 216
>DICTYBASE|DDB_G0291444 [details] [associations]
symbol:DDB_G0291444 species:44689 "Dictyostelium
discoideum" [GO:0044351 "macropinocytosis" evidence=RCA]
dictyBase:DDB_G0291444 Pfam:PF05022 EMBL:AAFI02000177
InterPro:IPR007718 RefSeq:XP_635213.1 STRING:Q54EM7
EnsemblProtists:DDB0183896 GeneID:8628159 KEGG:ddi:DDB_G0291444
eggNOG:NOG140707 InParanoid:Q54EM7 OMA:TICEESS Uniprot:Q54EM7
Length = 447
Score = 89 (36.4 bits), Expect = 0.00013, Sum P(2) = 0.00013
Identities = 25/107 (23%), Positives = 56/107 (52%)
Query: 723 DYSTEELQAAQPHVSGANPPNLAAAA-EFAKRISNVNSKEEKSDAERERSRRLHDRSSQR 781
D S+ E +++ S ++ + + + E K++ + KE S++E E S D ++
Sbjct: 229 DSSSSESESSSSSSSDSSDSSDSESEDEKKKKVEKSSDKETSSESESEDS---DDEKDKK 285
Query: 782 EKDRSDEDNNRTRDEHKEKILDRDRDREHGLDKVKTPDNKKLLDAKQ 828
+ + D+ N+ ++E K+K +++D D + D++K + K + KQ
Sbjct: 286 KSKKEDKKENKKQEE-KKKPIEKDSDEDSD-DEMKVVEQPKKQEIKQ 330
Score = 84 (34.6 bits), Expect = 0.00013, Sum P(2) = 0.00013
Identities = 27/140 (19%), Positives = 60/140 (42%)
Query: 321 DAGAGKEDESVQSVEKNEPTKSPENLKDNETGNKESHDPTNFGVVTEEDRKADQEALEKL 380
D+ + D S EK + K + +D+ + + ES ++ +E+++K ++E+ +
Sbjct: 87 DSSDSESDSSDSEDEKEKEMKVDKKTEDSSSSS-ESDTESSSSSESEDEKKKEKESDDSS 145
Query: 381 TCMVEERLKTNXXXXXXXQTTADGSGISNSELPAKARDGDSDVDMIRNDIAEDKLDDETT 440
+ E ++ + + S S SE K DS D D + K++ +
Sbjct: 146 SS--ESESDSSSSESESESSESSSSSESESEDEKKKESSDSS-DSESEDEKKKKVESSDS 202
Query: 441 SDTKASDHDRPETSSPDRSR 460
S +++ D ++ S D +
Sbjct: 203 SSSESESSDSSDSESEDEKK 222
>WB|WBGene00000890 [details] [associations]
symbol:sig-7 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003755
"peptidyl-prolyl cis-trans isomerase activity" evidence=IEA]
[GO:0006457 "protein folding" evidence=IEA] [GO:0009792 "embryo
development ending in birth or egg hatching" evidence=IMP]
[GO:0040007 "growth" evidence=IMP] [GO:0002119 "nematode larval
development" evidence=IMP] [GO:0000003 "reproduction" evidence=IMP]
[GO:0040035 "hermaphrodite genitalia development" evidence=IMP]
InterPro:IPR000504 InterPro:IPR002130 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00160 PRINTS:PR00153 PROSITE:PS50072
PROSITE:PS50102 SMART:SM00360 GO:GO:0009792 GO:GO:0040007
GO:GO:0006457 GO:GO:0002119 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 GO:GO:0040035 GO:GO:0003755 SUPFAM:SSF50891
GO:GO:0000413 GeneTree:ENSGT00670000097658 KO:K12735 OMA:DRTQNRS
EMBL:Z97628 EMBL:Z81080 PIR:T22008 RefSeq:NP_492343.2 HSSP:Q27450
ProteinModelPortal:G5EEW6 SMR:G5EEW6 PRIDE:G5EEW6
EnsemblMetazoa:F39H2.2a GeneID:172664 KEGG:cel:CELE_F39H2.2
CTD:172664 WormBase:F39H2.2a NextBio:876477 Uniprot:G5EEW6
Length = 427
Score = 111 (44.1 bits), Expect = 0.00014, Sum P(2) = 0.00014
Identities = 28/72 (38%), Positives = 41/72 (56%)
Query: 752 KRISNVNSKEEKSDAERERSRRLHDRSSQREKDRSDEDNNRTR-DEHKEKILDRDRDREH 810
+R S K++K D RE +RR + R++DRS DNNR R D H++ DRDR R H
Sbjct: 360 RRRSPSPKKDKKRDYRREPARRRRSSDNHRDRDRSYRDNNRDRRDNHRDS--DRDR-RRH 416
Query: 811 GLDKVKTPDNKK 822
++PD ++
Sbjct: 417 D----RSPDRRR 424
Score = 60 (26.2 bits), Expect = 0.00014, Sum P(2) = 0.00014
Identities = 17/85 (20%), Positives = 40/85 (47%)
Query: 217 PQTKVYVGKIAP-TADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLR 275
P+ ++V K+ P T D D + + G + + + + +G + F EF++A+ +
Sbjct: 239 PENVLFVCKLNPVTTDEDLEI-IFSRFGKINNCEIVRDRRSGDSLQYAFIEFDNAKSCEQ 297
Query: 276 ALRLLNKFNIDGQELMLKVDQATRE 300
A ++ ID + + + Q+ +
Sbjct: 298 AFFKMDNVLIDDRRIHVDFSQSVSQ 322
>WB|WBGene00018926 [details] [associations]
symbol:F56A11.6 species:6239 "Caenorhabditis elegans"
[GO:0016021 "integral to membrane" evidence=IEA] [GO:0009792
"embryo development ending in birth or egg hatching" evidence=IMP]
GO:GO:0009792 EMBL:FO080624 GeneTree:ENSGT00700000104144
RefSeq:NP_499950.3 EnsemblMetazoa:F56A11.6 GeneID:176884
KEGG:cel:CELE_F56A11.6 UCSC:F56A11.6 CTD:176884 WormBase:F56A11.6
eggNOG:NOG250747 InParanoid:O44519 OMA:SHHEKER NextBio:894440
Uniprot:O44519
Length = 419
Score = 101 (40.6 bits), Expect = 0.00019, Sum P(2) = 0.00019
Identities = 21/65 (32%), Positives = 39/65 (60%)
Query: 759 SKEEKSDAERERSRRLHDRSSQREKDRSDEDNNRTRDEHKEKIL-DRDRDREHGLDKVKT 817
S++++ D +RERSR+ +R + KDR D + R+R E +++ DR+R R+ D+ +
Sbjct: 300 SRKDREDRDRERSRK--EREDRSRKDREDRERERSRKEREDRSRKDRERSRQDREDRDRD 357
Query: 818 PDNKK 822
D +
Sbjct: 358 RDRDR 362
Score = 69 (29.3 bits), Expect = 0.00019, Sum P(2) = 0.00019
Identities = 33/133 (24%), Positives = 51/133 (38%)
Query: 338 EPTKSPENLKDNETGNKES----HDPTN-FGVVTEEDRKADQE---ALEKLTCMVEERLK 389
EP K P + ++S H P +G +++DR+ D+E E + + LK
Sbjct: 181 EPRKHPARDERRPRSRRQSPSSMHGPPPPYGPPSDDDRRRDEEDRRRTEDVDRSKDRSLK 240
Query: 390 TNXXXXXXXQTTA-DGS-GISNSELPAKARDGDSDVDMIRNDIAEDKLDDETTSDTKASD 447
Q D S G S P K+ D D R+D +D+ + D + D
Sbjct: 241 RREERSRSRQDRERDRSRGGEKSRSPRKSHQKSVDRDKTRSD--KDR--SRSRKDREDRD 296
Query: 448 HDRPETSSPDRSR 460
+R DR R
Sbjct: 297 RERSRKDREDRDR 309
>DICTYBASE|DDB_G0269732 [details] [associations]
symbol:DDB_G0269732 "DnaJ homolog subfamily C member
1" species:44689 "Dictyostelium discoideum" [GO:0005634 "nucleus"
evidence=IEA] InterPro:IPR000953 PROSITE:PS50013 SMART:SM00298
InterPro:IPR001623 dictyBase:DDB_G0269732 Pfam:PF00226
GO:GO:0005634 GO:GO:0006457 EMBL:AAFI02000005 Gene3D:1.10.287.110
PRINTS:PR00625 SMART:SM00271 SUPFAM:SSF46565 PROSITE:PS50076
InterPro:IPR016197 SUPFAM:SSF54160 RefSeq:XP_646233.1
ProteinModelPortal:Q55D98 EnsemblProtists:DDB0190510 GeneID:8617189
KEGG:ddi:DDB_G0269732 eggNOG:NOG306043 InParanoid:Q55D98
OMA:MISSESD ProtClustDB:CLSZ2846844 Uniprot:Q55D98
Length = 812
Score = 101 (40.6 bits), Expect = 0.00021, Sum P(3) = 0.00021
Identities = 19/75 (25%), Positives = 44/75 (58%)
Query: 749 EFAKRISNVNSKEEKSDAERERSRRLHDRSS-QREKDRSDEDNNRTRDEHKEKILDRDRD 807
E+ K+++N K E+ + E+ERS R +R +R+++ ++++ + + + L+RDR+
Sbjct: 508 EYKKKVAN--RKMERKEREKERSERSEERERLERDRESAEKEKKEKSERERRERLERDRE 565
Query: 808 REHGLDKVKTPDNKK 822
R +++ K N +
Sbjct: 566 RRERVEREKKEKNDR 580
Score = 67 (28.6 bits), Expect = 0.00021, Sum P(3) = 0.00021
Identities = 30/138 (21%), Positives = 55/138 (39%)
Query: 324 AGKEDESVQSVEKNEPTKSPENLKDNETGNKESHDPTNFGVVTEEDRKADQEALEKLTCM 383
A K S S + + S + + T S T+ TE+ +D++ + ++
Sbjct: 276 AKKSSASSSSSSSSSSSSSSSSFFSSSTSTPTSTS-TSTSNTTEKMDFSDEDDI--VSSP 332
Query: 384 VEER--LKTNXXXXXXXQTTADGSGISNSELPAKARDGDSDVDMIRNDIAEDKLDDETTS 441
VEE+ +K++ T ++ P+K+ V + + +DK D+E
Sbjct: 333 VEEKSEVKSSQSKSSQNSTPTKPKPPTSRSTPSKSHTTRQSVKHVYQE-RDDK-DEEIYE 390
Query: 442 DTKASDHDRPETSSPDRS 459
D K D D E +RS
Sbjct: 391 DEKEKDQDEVEDEGSERS 408
Score = 52 (23.4 bits), Expect = 0.00021, Sum P(3) = 0.00021
Identities = 13/62 (20%), Positives = 22/62 (35%)
Query: 59 TPAPASLPPAPVQSFVPPTQPISYRPVPMSTASQFSPVQNYQSXXXXXXXXXXXXXTMAP 118
T + P P + FVPP + + P ST + S + + + AP
Sbjct: 112 TKTSTTTPTTPSKKFVPPVKQTT-TTAPSSTTTTTSTAPSSTTTTTSTAPSSTTTTSTAP 170
Query: 119 PM 120
+
Sbjct: 171 SL 172
>ASPGD|ASPL0000005213 [details] [associations]
symbol:AN6074 species:162425 "Emericella nidulans"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0005849 "mRNA
cleavage factor complex" evidence=IEA] [GO:0003729 "mRNA binding"
evidence=IEA] [GO:0046982 "protein heterodimerization activity"
evidence=IEA] [GO:0006379 "mRNA cleavage" evidence=IEA] [GO:0006378
"mRNA polyadenylation" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:BN001301
InterPro:IPR025742 InterPro:IPR026896 Pfam:PF14327 Pfam:PF14304
OMA:QLAYAIF ProteinModelPortal:C8V2S8 EnsemblFungi:CADANIAT00006943
Uniprot:C8V2S8
Length = 293
Score = 119 (46.9 bits), Expect = 0.00021, Sum P(2) = 0.00021
Identities = 25/75 (33%), Positives = 40/75 (53%)
Query: 221 VYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLL 280
V++G I + V +L GTV ++ P G PKG+GF +F A+ A+R L
Sbjct: 10 VFLGNIPYNLTEEQVKDILSTAGTVTKFRLMMNPETGKPKGYGFADFADADAAASAVRNL 69
Query: 281 NKFNIDGQELMLKVD 295
N + I G+++ +VD
Sbjct: 70 NDYEIMGRKI--RVD 82
Score = 44 (20.5 bits), Expect = 0.00021, Sum P(2) = 0.00021
Identities = 14/32 (43%), Positives = 15/32 (46%)
Query: 722 IDYSTEEL---QAAQPHVSGANPPNLAAAAEF 750
+DYST QAAQP PP AA F
Sbjct: 191 VDYSTLGAVVEQAAQPMAPPPAPPAAAAFQPF 222
>MGI|MGI:102744 [details] [associations]
symbol:Nelfe "negative elongation factor complex member E,
Rdbp" species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005515 "protein
binding" evidence=IPI] [GO:0005634 "nucleus" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0032021 "NELF complex" evidence=ISO] [GO:0034244
"negative regulation of transcription elongation from RNA
polymerase II promoter" evidence=IMP] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
MGI:MGI:102744 GO:GO:0005739 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0006351 GO:GO:0003723 GO:GO:0034244 EMBL:AF109906
UniGene:Mm.653 GO:GO:0032021 CTD:7936 eggNOG:NOG86140
HOGENOM:HOG000232089 HOVERGEN:HBG052598 KO:K15182 OMA:GYEERSG
OrthoDB:EOG4PNXJ1 EMBL:M21332 EMBL:AK012389 EMBL:BC034867
EMBL:U83841 EMBL:U83842 IPI:IPI00395067 IPI:IPI00395068 PIR:A40112
RefSeq:NP_001039328.1 RefSeq:NP_001039329.1 RefSeq:NP_613046.2
UniGene:Mm.279907 ProteinModelPortal:P19426 SMR:P19426
IntAct:P19426 STRING:P19426 PhosphoSite:P19426 PaxDb:P19426
PRIDE:P19426 Ensembl:ENSMUST00000097343 Ensembl:ENSMUST00000165953
Ensembl:ENSMUST00000173357 GeneID:27632 KEGG:mmu:27632
InParanoid:P19426 NextBio:305826 Bgee:P19426 CleanEx:MM_RDBP
Genevestigator:P19426 GermOnline:ENSMUSG00000024369 Uniprot:P19426
Length = 375
Score = 123 (48.4 bits), Expect = 0.00022, P = 0.00022
Identities = 34/92 (36%), Positives = 51/92 (55%)
Query: 723 DYSTEELQAAQPHVSGANPPNLAAAAEFAKRISNVNSKEEKSDAERERSRRLHDRSSQRE 782
D+S EE +A+ S A+PP + S+ S++ D ER+R R DR R+
Sbjct: 167 DWSYEEHGSAR---SSASPPRSRSRDR-----SHDRSRDRDRDKERDRDR---DRDRDRD 215
Query: 783 KDRSDEDNNRTRDEHKEKILDRDRDREHGLDK 814
+D+ D+D +R RD KE+ DRDRDR+ D+
Sbjct: 216 RDK-DKDRDRDRDRDKERDRDRDRDRDRERDR 246
>UNIPROTKB|G3FP13 [details] [associations]
symbol:PQBP1 "Polyglutamine binding protein 1" species:9823
"Sus scrofa" [GO:0071598 "neuronal ribonucleoprotein granule"
evidence=IEA] [GO:0034063 "stress granule assembly" evidence=IEA]
[GO:0010494 "cytoplasmic stress granule" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] InterPro:IPR001202 PROSITE:PS50020
SMART:SM00456 GO:GO:0005634 GO:GO:0005737 SUPFAM:SSF51045
GO:GO:0034063 CTD:10084 GeneTree:ENSGT00390000001905 KO:K12865
OMA:SHEKSDR EMBL:FP565308 EMBL:JF750401 RefSeq:NP_001233597.1
UniGene:Ssc.1853 Ensembl:ENSSSCT00000030898 GeneID:100620849
KEGG:ssc:100620849 Uniprot:G3FP13
Length = 265
Score = 120 (47.3 bits), Expect = 0.00023, P = 0.00023
Identities = 33/99 (33%), Positives = 53/99 (53%)
Query: 743 NLAAAAEFAKRISNVNSK-EEKSDAERERSRRLHDRSSQREKDRSDEDNNRTRDE-HKEK 800
N A A E R + + EKS+ E+S R H++S +R ++SD D R D+ +E+
Sbjct: 95 NNADAEEKLDRSHEKSERGHEKSERSHEKSERGHEKS-ERGHEKSDRDRERGYDKVDRER 153
Query: 801 ILDRDRDREHGLDKVKTPDNKKLLD-AKQLIDMIPKTKE 838
DRDRDR+ G DK + K+ ++ + PK+K+
Sbjct: 154 ERDRDRDRDRGYDKADREEGKERRHHRREELAPYPKSKK 192
>DICTYBASE|DDB_G0282873 [details] [associations]
symbol:DDB_G0282873 "RNA-binding region RNP-1
domain-containing protein" species:44689 "Dictyostelium discoideum"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0008150 "biological_process"
evidence=ND] [GO:0005575 "cellular_component" evidence=ND]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 dictyBase:DDB_G0282873 GO:GO:0000166
EMBL:AAFI02000047 Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:NOG313287
RefSeq:XP_639372.1 ProteinModelPortal:Q54RW5
EnsemblProtists:DDB0233751 GeneID:8623811 KEGG:ddi:DDB_G0282873
InParanoid:Q54RW5 OMA:RDRDDHD Uniprot:Q54RW5
Length = 952
Score = 104 (41.7 bits), Expect = 0.00066, Sum P(3) = 0.00066
Identities = 31/95 (32%), Positives = 46/95 (48%)
Query: 737 SGANPPNLAAA---AEFAKRISNVNSKEEKSDAERERSRRL---HDRSSQREKDRSD--- 787
SG + P+ E KR +V+ +E + D ER+R RR +D R++DR D
Sbjct: 480 SGGSSPDRYGGDYHGEKRKRDDDVDERERERDRERDRERRERDDYDNRRDRDRDRDDYDR 539
Query: 788 EDNNRTRDEHKEKILDRDRDREHGLDKVKTPDNKK 822
D +R RD+H RDRD +H D N++
Sbjct: 540 RDRDRDRDDHDSGSSRRDRD-DH--DSGNNSSNRR 571
Score = 98 (39.6 bits), Expect = 0.00023, Sum P(3) = 0.00023
Identities = 20/66 (30%), Positives = 38/66 (57%)
Query: 751 AKRISNVNSKEEKSDAERERSRRLHDRSS--QREKDRSDEDNNRTRDEHKEKILDRDRDR 808
++R + + S + R+R R HD SS +R++DR D D++ + +++ DR+RDR
Sbjct: 600 SRRDRDDHDSNSNSSSRRDRDRDDHDSSSSSRRDRDRDDHDSSSSSRRDRDRDRDRERDR 659
Query: 809 EHGLDK 814
+ D+
Sbjct: 660 DRSSDR 665
Score = 91 (37.1 bits), Expect = 0.00039, Sum P(3) = 0.00039
Identities = 22/58 (37%), Positives = 35/58 (60%)
Query: 755 SNVNSKEEKSDAERERSR-RLHDRSSQ--REKDRSDEDNNRTRDEHKEKILDRDRDRE 809
S+ + ++ D +RER R R DR S+ R+K+R D +NR+ +H ++ D RDRE
Sbjct: 642 SSSSRRDRDRDRDRERDRDRSSDRRSESTRDKERDDRSDNRSSRDHYDR--DSTRDRE 697
Score = 70 (29.7 bits), Expect = 0.00023, Sum P(3) = 0.00023
Identities = 16/52 (30%), Positives = 27/52 (51%)
Query: 243 GTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKV 294
G + + K + +NG KG+ F EFE E A K I+G+E+ +++
Sbjct: 187 GKIVTLKIFENENNGKSKGYAFVEFEHIEQAQLAKSKTEKKEINGKEMTIRL 238
Score = 59 (25.8 bits), Expect = 0.00039, Sum P(3) = 0.00039
Identities = 21/62 (33%), Positives = 27/62 (43%)
Query: 403 DGSGISNSELPAKARDG-DSDVDMI-RNDIAEDKLDDETTS--DTKASDHDRPETSSPDR 458
D SNS + RD DS+ + R D D D ++S D DHD +S DR
Sbjct: 590 DSGSSSNSGSSRRDRDDHDSNSNSSSRRDRDRDDHDSSSSSRRDRDRDDHDSSSSSRRDR 649
Query: 459 SR 460
R
Sbjct: 650 DR 651
Score = 54 (24.1 bits), Expect = 0.00023, Sum P(3) = 0.00023
Identities = 32/142 (22%), Positives = 53/142 (37%)
Query: 322 AGAGKEDESVQSVEKNEPTKSPENLKDNETGNKESHDPTNFGVVTEEDRKADQEALEKLT 381
+G G+ S + E + SP+ + G K D E DR+ D+E E+
Sbjct: 464 SGGGRPYSSSKRDEWSSGGSSPDRYGGDYHGEKRKRDDDVDERERERDRERDRERRERDD 523
Query: 382 CMVEERLKTNXXXXXXXQTTADGSGISNSELPAKARDGDSDVDMIRNDI-AEDKLDDETT 440
+ R + + D + + + RD D D D N D+ D ++
Sbjct: 524 --YDNRRDRDRDRDDYDRRDRDRDR-DDHDSGSSRRDRD-DHDSGNNSSNRRDRDDHDSG 579
Query: 441 SDTKAS--DHDRPETSSPDRSR 460
S + DHD +S+ SR
Sbjct: 580 SSNRRDRDDHDSGSSSNSGSSR 601
Score = 43 (20.2 bits), Expect = 0.00066, Sum P(3) = 0.00066
Identities = 8/39 (20%), Positives = 19/39 (48%)
Query: 647 ENHMAGDPSSQNGNGDESTNVPIAASDMRQSGNVPARKL 685
+ H+ +S N N + +TN A+++ ++ + L
Sbjct: 264 QQHLNSSSNSHNNNNNNNTNSGNIANNIHHQSSLSSSSL 302
>ZFIN|ZDB-GENE-030131-6251 [details] [associations]
symbol:ppil4 "peptidylprolyl isomerase
(cyclophilin)-like 4" species:7955 "Danio rerio" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0006457 "protein folding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003755 "peptidyl-prolyl cis-trans isomerase activity"
evidence=IEA] [GO:0005575 "cellular_component" evidence=ND]
[GO:0016853 "isomerase activity" evidence=IEA] InterPro:IPR000504
InterPro:IPR002130 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00160
PRINTS:PR00153 PROSITE:PS50072 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-030131-6251 GO:GO:0006457 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0003755 SUPFAM:SSF50891
GO:GO:0000413 HOVERGEN:HBG057731 HSSP:Q27450 EMBL:BC056814
IPI:IPI00505393 UniGene:Dr.80688 ProteinModelPortal:Q6PGV9
PRIDE:Q6PGV9 InParanoid:Q6PGV9 ArrayExpress:Q6PGV9 Bgee:Q6PGV9
Uniprot:Q6PGV9
Length = 454
Score = 101 (40.6 bits), Expect = 0.00031, Sum P(2) = 0.00031
Identities = 23/72 (31%), Positives = 40/72 (55%)
Query: 752 KRISNVNSKEEKSDAERERSRRLHDRSSQREKDRSDEDNNRTRDEHKEKILDRDRD-REH 810
KR S+ ++K +R+ SRR D+S QR + R D R +D+ +E+ DRD D + H
Sbjct: 385 KRHSDSERTKDKRSKDRDESRREKDKSRQRSRSR---DRERQKDKQRERGRDRDGDHKRH 441
Query: 811 GLDKVKTPDNKK 822
++ ++P +
Sbjct: 442 RRERSRSPKRSR 453
Score = 68 (29.0 bits), Expect = 0.00031, Sum P(2) = 0.00031
Identities = 39/179 (21%), Positives = 67/179 (37%)
Query: 217 PQTKVYVGKIAP-TADSDFVL-----SVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESA 270
P+ ++V K+ P T D D + ++K C ++ WK G + F EFE
Sbjct: 238 PENVLFVCKLNPVTTDEDLEIIFSRFGLIKCCEIIRDWK------TGESLCYAFIEFEKE 291
Query: 271 EGVLRALRLLNKFNIDGQELMLKVDQATREYLERYVDXXXXXXXXXXXXQDAGAGKEDES 330
E +A ++ ID + + +VD + K+D
Sbjct: 292 EDCEKAYFKMDNVLIDDRRI--------------HVDFSQSVSKIKWKGKGGKYTKDD-- 335
Query: 331 VQSVEKNEPTKSPENLKDNETGNKESHDPTNFGVVTEEDRKADQEALEKLTCMVEERLK 389
++ EK+ K+ LKD ++S ++ RK D+E E+ ER K
Sbjct: 336 FKAYEKDLDNKAKLALKDKVKSKQDSRYELLLDEDEDDGRKDDREKRERKRHSDSERTK 394
>TAIR|locus:2058141 [details] [associations]
symbol:AT2G43370 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005634 "nucleus" evidence=ISM;IDA] [GO:0008150
"biological_process" evidence=ND] [GO:0000398 "mRNA splicing, via
spliceosome" evidence=RCA] [GO:0008284 "positive regulation of cell
proliferation" evidence=RCA] [GO:0048573 "photoperiodism,
flowering" evidence=RCA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
EMBL:CP002685 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GO:GO:0030529 HSSP:Q9V535 HOGENOM:HOG000006374 KO:K13155
EMBL:AY072388 EMBL:AY114697 IPI:IPI00539495 RefSeq:NP_850395.1
UniGene:At.42685 ProteinModelPortal:Q8VY74 SMR:Q8VY74 IntAct:Q8VY74
STRING:Q8VY74 EnsemblPlants:AT2G43370.1 GeneID:818938
KEGG:ath:AT2G43370 TAIR:At2g43370 InParanoid:Q8VY74 OMA:RLVRHIV
PhylomeDB:Q8VY74 ProtClustDB:CLSN2680226 Genevestigator:Q8VY74
Uniprot:Q8VY74
Length = 333
Score = 101 (40.6 bits), Expect = 0.00031, Sum P(2) = 0.00031
Identities = 20/76 (26%), Positives = 43/76 (56%)
Query: 217 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRA 276
P ++VG+++ D + V+ G +K+ + ++ G +G+GF E+E+ + +LRA
Sbjct: 62 PYCTLFVGRLSHHTTEDTLREVMSKYGRIKNLRLVRHIVTGASRGYGFVEYETEKEMLRA 121
Query: 277 LRLLNKFNIDGQELML 292
+ IDG+E+++
Sbjct: 122 YEDAHHSLIDGREIIV 137
Score = 64 (27.6 bits), Expect = 0.00031, Sum P(2) = 0.00031
Identities = 16/47 (34%), Positives = 24/47 (51%)
Query: 759 SKEEKSDAERERSRRLHDR--------SSQREKDRSDEDNNRTRDEH 797
S+EE +ER+R + DR S + RS+ED +R R +H
Sbjct: 269 SREESRSDRKERARGMEDRYGDNKGEVSGSKRSKRSEEDRSRKRHKH 315
Score = 59 (25.8 bits), Expect = 0.0010, Sum P(2) = 0.0010
Identities = 22/81 (27%), Positives = 38/81 (46%)
Query: 749 EFAKRISNVNSKEE---KSDAERERSRR--LHDRSS--QREKDRSDEDNNRTRDEHKEKI 801
E+ + S+V +EE +S S R H SS +R KDR + +R + KE+
Sbjct: 222 EYYREKSSVEREEEFKERSSLRSYHSHRSSAHTHSSHRRRSKDREECSREESRSDRKERA 281
Query: 802 LDRDRDREHGLDKVKTPDNKK 822
R + +G +K + +K+
Sbjct: 282 --RGMEDRYGDNKGEVSGSKR 300
>UNIPROTKB|Q4G0J3 [details] [associations]
symbol:LARP7 "La-related protein 7" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0006396
"RNA processing" evidence=IEA] [GO:0030529 "ribonucleoprotein
complex" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005654 "nucleoplasm" evidence=IEA] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA]
InterPro:IPR000504 InterPro:IPR002344 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00302 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005737 GO:GO:0005654 GO:GO:0000166
Gene3D:3.30.70.330 Gene3D:1.10.10.10 InterPro:IPR011991
GO:GO:0003723 GO:GO:0006396 GO:GO:0030529 EMBL:CH471057
InterPro:IPR006630 PROSITE:PS50961 eggNOG:COG5193 Pfam:PF05383
SMART:SM00715 HSSP:P05455 CTD:51574 HOGENOM:HOG000113284
HOVERGEN:HBG081891 KO:K15191 OrthoDB:EOG4TXBS0 InterPro:IPR014886
Pfam:PF08777 EMBL:EU667388 EMBL:AF068284 EMBL:BC066945
EMBL:BC107709 EMBL:AL049996 IPI:IPI00294742 IPI:IPI00395536
PIR:T08692 RefSeq:NP_001253968.1 RefSeq:NP_056269.1
RefSeq:NP_057732.2 UniGene:Hs.713663 ProteinModelPortal:Q4G0J3
SMR:Q4G0J3 DIP:DIP-47624N IntAct:Q4G0J3 MINT:MINT-4540675
STRING:Q4G0J3 PhosphoSite:Q4G0J3 DMDM:121945944 PaxDb:Q4G0J3
PRIDE:Q4G0J3 Ensembl:ENST00000324052 Ensembl:ENST00000344442
Ensembl:ENST00000509061 GeneID:51574 KEGG:hsa:51574 UCSC:uc003iay.3
GeneCards:GC04P113559 HGNC:HGNC:24912 HPA:HPA026842 HPA:HPA027930
MIM:612026 neXtProt:NX_Q4G0J3 PharmGKB:PA145148525
InParanoid:Q4G0J3 ChiTaRS:LARP7 GenomeRNAi:51574 NextBio:55403
ArrayExpress:Q4G0J3 Bgee:Q4G0J3 CleanEx:HS_LARP7
Genevestigator:Q4G0J3 Uniprot:Q4G0J3
Length = 582
Score = 105 (42.0 bits), Expect = 0.00035, Sum P(2) = 0.00035
Identities = 30/128 (23%), Positives = 53/128 (41%)
Query: 215 EKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVL 274
++ + VYV + + ++ V CG V Y S G PKGF F EFE+ E
Sbjct: 121 DEDERTVYVELLPKNVNHSWIERVFGKCGNVVYISIPHYKSTGDPKGFAFVEFETKEQAA 180
Query: 275 RALRLLNKFNIDGQELMLKVDQATREYLERYVDXXXXXXXXXXXXQDAGAGKEDESVQSV 334
+A+ LN +E K + + + + G K+++++Q+
Sbjct: 181 KAIEFLNN---PPEEAPRKPGIFPKTVKNKPIPALRVVEEKKKKKKKKGRMKKEDNIQAK 237
Query: 335 EKNEPTKS 342
E+N T +
Sbjct: 238 EENMDTSN 245
Score = 66 (28.3 bits), Expect = 0.00035, Sum P(2) = 0.00035
Identities = 19/86 (22%), Positives = 40/86 (46%)
Query: 752 KRISNVNSKEEKSDAERERSRRLHDRSSQREKDRSDEDNNRTRDEHKEKILDRDRDREHG 811
K+ N+ +KEE D ++ + S+ + SD ++ + + +K RDR
Sbjct: 229 KKEDNIQAKEENMDTSNTSISKM--KRSRPTSEGSDIESTEPQKQCSKKKKKRDRVEASS 286
Query: 812 LDKVKTPDNKKLLDAKQLIDMIPKTK 837
L +V+T K+ ++ + P++K
Sbjct: 287 LPEVRTGKRKRS-SSEDAESLAPRSK 311
Score = 63 (27.2 bits), Expect = 0.00071, Sum P(2) = 0.00071
Identities = 25/107 (23%), Positives = 54/107 (50%)
Query: 725 STEELQAAQPHVSGANPPNLAAAAEFAKRISNVNSKEEKSDAERERSRRLHDRSSQREKD 784
S E++ + S + A K+I + +E S+A +E +R + + S++ EKD
Sbjct: 286 SLPEVRTGKRKRSSSEDAESLAPRSKVKKIIQKDIIKEASEASKE-NRDI-EISTEEEKD 343
Query: 785 RSD-EDNN--RTRDEHKEKILDRDRDREHGLDKVKTPDNKKLLDAKQ 828
D +D++ +T+ +HK+K +R + E + ++ + +D K+
Sbjct: 344 TGDLKDSSLLKTKRKHKKKHKERHKMGEEVIP-LRVLSKSEWMDLKK 389
>UNIPROTKB|G4NGT8 [details] [associations]
symbol:MGG_17707 "Uncharacterized protein" species:242507
"Magnaporthe oryzae 70-15" [GO:0003674 "molecular_function"
evidence=ND] [GO:0005575 "cellular_component" evidence=ND]
[GO:0008150 "biological_process" evidence=ND] EMBL:CM001236
RefSeq:XP_003719815.1 EnsemblFungi:MGG_17707T0 GeneID:12986241
KEGG:mgr:MGG_17707 Uniprot:G4NGT8
Length = 1008
Score = 120 (47.3 bits), Expect = 0.00035, Sum P(2) = 0.00035
Identities = 38/137 (27%), Positives = 64/137 (46%)
Query: 693 GKR--TAVPSVFHVEXXXXXXXXXXMRPLVPIDYSTEEL-QAAQPHVSGANPPNLAAAAE 749
GK+ A P+V + ++ + I T + + P S A PP A E
Sbjct: 361 GKKLSAAAPTVKQLTPITKPSAKPEVKTIKEIKIKTVPMAETPAPPPSQA-PPKAEAPRE 419
Query: 750 FAKRISNVNSKEEKSDAERERSRRLHD--RSSQREKDRS--DEDNNRTRDEH-KEKILDR 804
+K + + KE+ +RE++RR RSS R++DR D R+RD H +++ R
Sbjct: 420 ESKDTATKSGKEDPPSKDREQARRPSSVQRSSDRDRDRDRGGRDRERSRDRHTRDRSRAR 479
Query: 805 DRDREHGLDKVKTPDNK 821
D R+ +D+ + PD +
Sbjct: 480 DHSRQSRIDERRRPDRR 496
Score = 56 (24.8 bits), Expect = 0.00035, Sum P(2) = 0.00035
Identities = 27/132 (20%), Positives = 52/132 (39%)
Query: 332 QSVEKN-EPTKSPENLKDNETGNKESHDPTNFGVVTEED-RKADQEALEKLTCMVEERLK 389
+++E N + E ++ +E T+ + R+A++E + VEE +K
Sbjct: 129 EAIENNIRELRRAEIGEEAALAEQERGSKTDIAYAADRAARQAEREKVRDELRKVEE-MK 187
Query: 390 TNXXXXXXXQTTADGSGISNSELPAKARDGDSDVDMIRN-DIAEDKLDDETTSDTKASDH 448
N + E AK ++ + + + R+ D E + + S + D
Sbjct: 188 RNLERDIREKEERAAREAREKEREAKRKEREKERERDRSKDRRERRRESRDRSRRGSRDR 247
Query: 449 DRPETSSPDRSR 460
DR + DRSR
Sbjct: 248 DRSRSRRRDRSR 259
>ZFIN|ZDB-GENE-030131-2891 [details] [associations]
symbol:puf60a "poly-U binding splicing factor a"
species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR003954 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 SMART:SM00361
ZFIN:ZDB-GENE-030131-2891 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 GeneTree:ENSGT00630000089747 InterPro:IPR006532
TIGRFAMs:TIGR01645 EMBL:BX323559 IPI:IPI00919560
Ensembl:ENSDART00000056645 ArrayExpress:F1QZ57 Bgee:F1QZ57
Uniprot:F1QZ57
Length = 538
Score = 125 (49.1 bits), Expect = 0.00036, Sum P(2) = 0.00036
Identities = 24/71 (33%), Positives = 40/71 (56%)
Query: 220 KVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRL 279
++YV + P D + SV + G +KS A+ P+ G KG+GF E++ A+ A+
Sbjct: 191 RIYVASVHPDLSDDDIKSVFEAFGRIKSCSLARDPTTGKHKGYGFIEYDKAQSAQDAVSS 250
Query: 280 LNKFNIDGQEL 290
+N F++ GQ L
Sbjct: 251 MNLFDLGGQYL 261
Score = 44 (20.5 bits), Expect = 0.00036, Sum P(2) = 0.00036
Identities = 13/46 (28%), Positives = 22/46 (47%)
Query: 717 RPLVPIDYSTEELQAAQPHVSGANPPNLAAAAEFAKRISNVNSKEE 762
RP +P+ ++ P +S +PP L+AA A+ +EE
Sbjct: 362 RPAMPV---VPQVGLVNPVLS--SPPTLSAAVAAAQEAKKEKEEEE 402
Score = 42 (19.8 bits), Expect = 0.00058, Sum P(2) = 0.00058
Identities = 17/84 (20%), Positives = 36/84 (42%)
Query: 356 SHDPT-NFGVVTEEDRKADQEALEKLTCMVEERLKTNXXXXXXXQTTADGSGISNSELPA 414
S PT + V ++ K ++E E L + + + + + GS + +
Sbjct: 379 SSPPTLSAAVAAAQEAKKEKEEEEALLDGLGQEMLSEQE-----HMSISGSSARHMVMQK 433
Query: 415 KARDGDSDVDMIRNDIAEDKLDDE 438
R +S V ++RN + + +DD+
Sbjct: 434 LLRKQESTVMVLRNMVGPEDIDDD 457
>UNIPROTKB|Q2HJC9 [details] [associations]
symbol:PQBP1 "Polyglutamine-binding protein 1" species:9913
"Bos taurus" [GO:0005634 "nucleus" evidence=IEA] [GO:0071598
"neuronal ribonucleoprotein granule" evidence=IEA] [GO:0034063
"stress granule assembly" evidence=IEA] [GO:0010494 "cytoplasmic
stress granule" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] InterPro:IPR001202
Pfam:PF00397 PROSITE:PS01159 PROSITE:PS50020 SMART:SM00456
GO:GO:0005634 GO:GO:0005737 GO:GO:0006355 GO:GO:0006351
SUPFAM:SSF51045 GO:GO:0034063 EMBL:BC105573 IPI:IPI00711362
RefSeq:NP_001039854.1 UniGene:Bt.13598 STRING:Q2HJC9 PRIDE:Q2HJC9
Ensembl:ENSBTAT00000024621 GeneID:534894 KEGG:bta:534894 CTD:10084
eggNOG:NOG265480 GeneTree:ENSGT00390000001905 HOGENOM:HOG000231359
HOVERGEN:HBG053064 InParanoid:Q2HJC9 KO:K12865 OMA:SHEKSDR
OrthoDB:EOG4NCMF0 NextBio:20876561 Uniprot:Q2HJC9
Length = 263
Score = 118 (46.6 bits), Expect = 0.00037, P = 0.00037
Identities = 38/118 (32%), Positives = 63/118 (53%)
Query: 736 VSGANP--PNLAAAAEFAK-RISNVNSKE------EKSDAERERSRRLHDRS--SQREKD 784
VS +P PN K R SN +++E EKSD E+S R H++S S + +
Sbjct: 73 VSWLSPHDPNSVVTKSAKKLRSSNADAEEKLDRSHEKSDRGHEKSDRGHEKSDRSHEKSE 132
Query: 785 RSDEDNNRTRDEHKEKI---LDRDRDREHGLDKVKTPDNKKLLD-AKQLIDMIPKTKE 838
R+ E ++R R+ +K+ +RDRDR+ G DKV ++K+ ++ + PK+K+
Sbjct: 133 RNHEKSDRDRERGYDKVDRERERDRDRDRGYDKVDREESKERRHHRREELAPYPKSKK 190
>ZFIN|ZDB-GENE-040625-116 [details] [associations]
symbol:puf60b "poly-U binding splicing factor b"
species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0030529 "ribonucleoprotein complex" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006915 "apoptotic process"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0008380 "RNA splicing" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-040625-116 GO:GO:0005634 GO:GO:0006915 GO:GO:0006355
GO:GO:0008380 GO:GO:0000166 GO:GO:0003677 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0006351 GO:GO:0003723 GO:GO:0030529
eggNOG:COG0724 EMBL:AL772146 EMBL:BC071467 IPI:IPI00495062
IPI:IPI00512039 IPI:IPI00866101 RefSeq:NP_001002121.1
UniGene:Dr.90714 HSSP:P26368 ProteinModelPortal:Q6IQE0 SMR:Q6IQE0
STRING:Q6IQE0 PRIDE:Q6IQE0 Ensembl:ENSDART00000038487
Ensembl:ENSDART00000052274 Ensembl:ENSDART00000143285 GeneID:415211
KEGG:dre:415211 CTD:415211 GeneTree:ENSGT00630000089747
HOGENOM:HOG000267001 HOVERGEN:HBG055622 InParanoid:Q7ZZ33
OMA:YLTELEI OrthoDB:EOG4SQWWP NextBio:20818880 Bgee:Q6IQE0
InterPro:IPR006532 TIGRFAMs:TIGR01645 Uniprot:Q6IQE0
Length = 516
Score = 131 (51.2 bits), Expect = 0.00038, Sum P(2) = 0.00038
Identities = 27/71 (38%), Positives = 40/71 (56%)
Query: 220 KVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRL 279
++YV I P D + SV + G +KS A+ P+ G KGFGF E+E + L A+
Sbjct: 184 RIYVASIHPDLSDDDIKSVFEAFGKIKSCMLAREPTTGKHKGFGFIEYEKPQSSLDAVSS 243
Query: 280 LNKFNIDGQEL 290
+N F++ GQ L
Sbjct: 244 MNLFDLGGQYL 254
Score = 37 (18.1 bits), Expect = 0.00038, Sum P(2) = 0.00038
Identities = 5/17 (29%), Positives = 11/17 (64%)
Query: 785 RSDEDNNRTRDEHKEKI 801
+ +ED+ RT ++H +
Sbjct: 375 KREEDSRRTAEDHSAPV 391
>UNIPROTKB|E2RHX2 [details] [associations]
symbol:PQBP1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0071598 "neuronal ribonucleoprotein granule"
evidence=IEA] [GO:0034063 "stress granule assembly" evidence=IEA]
[GO:0010494 "cytoplasmic stress granule" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] InterPro:IPR001202 PROSITE:PS50020
SMART:SM00456 GO:GO:0005634 GO:GO:0005737 SUPFAM:SSF51045
GO:GO:0034063 CTD:10084 GeneTree:ENSGT00390000001905 KO:K12865
EMBL:AAEX03026338 RefSeq:XP_851217.2 Ensembl:ENSCAFT00000024826
GeneID:480909 KEGG:cfa:480909 NextBio:20855823 Uniprot:E2RHX2
Length = 265
Score = 118 (46.6 bits), Expect = 0.00038, P = 0.00038
Identities = 33/99 (33%), Positives = 53/99 (53%)
Query: 743 NLAAAAEFAKRISNVNSKE-EKSDAERERSRRLHDRSSQREKDRSDEDNNRTRDE-HKEK 800
N A A E +R + + EK D E+S R H++S R ++SD D R D+ +E+
Sbjct: 95 NNADAEEKLERGHEKSDRNHEKPDRSHEKSDRSHEKSD-RSHEKSDRDRERGYDKVDRER 153
Query: 801 ILDRDRDREHGLDKVKTPDNKKLLD-AKQLIDMIPKTKE 838
DRDRDR+ G DK ++K+ ++ + PK+K+
Sbjct: 154 DRDRDRDRDRGYDKSDREESKERRHHRREELAPYPKSKK 192
>UNIPROTKB|Q6DDW4 [details] [associations]
symbol:cpsf6 "Cleavage and polyadenylation specificity
factor subunit 6" species:8355 "Xenopus laevis" [GO:0003729 "mRNA
binding" evidence=ISS] [GO:0005634 "nucleus" evidence=ISS]
[GO:0005849 "mRNA cleavage factor complex" evidence=ISS]
[GO:0006378 "mRNA polyadenylation" evidence=ISS] InterPro:IPR000504
InterPro:IPR012677 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0006378 GO:GO:0005849
CTD:11052 KO:K14398 EMBL:BC077388 RefSeq:NP_001086745.1
UniGene:Xl.7296 ProteinModelPortal:Q6DDW4 PRIDE:Q6DDW4
GeneID:446580 KEGG:xla:446580 Xenbase:XB-GENE-961710
HOVERGEN:HBG104293 Uniprot:Q6DDW4
Length = 548
Score = 92 (37.4 bits), Expect = 0.00044, Sum P(2) = 0.00044
Identities = 24/70 (34%), Positives = 37/70 (52%)
Query: 754 ISNVNSKEEKSDAER-ERSRRLHDRSSQREKDRSDEDNNRTRDEHKEKILDRDRDREHGL 812
+ + SK S + R ERSR D S REK R + +R+RD H + +R R+RE
Sbjct: 473 LHGIESKSYGSGSRRRERSRE-RDHSRSREKSRRHK--SRSRDRHDDYYRERSRERERHR 529
Query: 813 DKVKTPDNKK 822
D+ + D ++
Sbjct: 530 DRERDRDRER 539
Score = 90 (36.7 bits), Expect = 0.00072, Sum P(2) = 0.00072
Identities = 20/51 (39%), Positives = 29/51 (56%)
Query: 759 SKEEKSDAERERSRRLHDRSSQREKDRSDEDNNRTRDEHKEKILDRDRDRE 809
S+E RE+SRR RS R D E +R R+ H+++ DRDR+R+
Sbjct: 491 SRERDHSRSREKSRRHKSRSRDRHDDYYRE-RSRERERHRDRERDRDRERD 540
Score = 78 (32.5 bits), Expect = 0.00044, Sum P(2) = 0.00044
Identities = 30/103 (29%), Positives = 35/103 (33%)
Query: 60 PAPASLPPAPVQSFVPPTQPISYRPVPMSTASQFSPVQNYQSXXXXXXXXXXXXXTMAPP 119
PA PP P + + P +P P P P Q PP
Sbjct: 221 PAGPGGPPPPFSAGMTPPRPPMCPPGPPGPPGPPPPGQPLPPPLPGPPNRGER----PPP 276
Query: 120 MMQYPGVP-GQPPNPALRPYAPIPNGYGAVPAPASGLPRYPAP 161
+ +PG P GQP L P P P GYG P P P P
Sbjct: 277 PVMFPGQPYGQPSIVTLPP-GPPPPGYGPPPGPPPPQQGPPPP 318
>DICTYBASE|DDB_G0281261 [details] [associations]
symbol:DDB_G0281261 "putative G-patch-containing
protein" species:44689 "Dictyostelium discoideum" [GO:0008150
"biological_process" evidence=ND] [GO:0005575 "cellular_component"
evidence=ND] [GO:0003674 "molecular_function" evidence=ND]
dictyBase:DDB_G0281261 EMBL:AAFI02000040 eggNOG:NOG150083 KO:K13123
InterPro:IPR011666 Pfam:PF07713 RefSeq:XP_640918.5
EnsemblProtists:DDB0233783 GeneID:8622981 KEGG:ddi:DDB_G0281261
OMA:LDPFSQF Uniprot:Q54U58
Length = 1113
Score = 116 (45.9 bits), Expect = 0.00046, Sum P(2) = 0.00046
Identities = 27/64 (42%), Positives = 36/64 (56%)
Query: 760 KEEKSDAERERSRRLHDRSSQREKDRS-DEDNNRTRDEHKEKILDRDRDREHGLDKVKTP 818
K++K D +RE+ R DR +REKDR D D R RD +E+ DRDR R D +
Sbjct: 1051 KDKKKDRDREKDRD-RDRDREREKDRDRDRDRERDRDRGRERERDRDRGRGRERDIDRDR 1109
Query: 819 DNKK 822
D K+
Sbjct: 1110 DRKR 1113
Score = 60 (26.2 bits), Expect = 0.00046, Sum P(2) = 0.00046
Identities = 16/58 (27%), Positives = 30/58 (51%)
Query: 325 GKE-DESVQSVEKNEPTKSPENLKDN-ETGNKESHDPTNFGVVTEEDRKADQEALEKL 380
G+E +S+ S+ +N T + N + + G+ E D ++ EED D+EA + +
Sbjct: 274 GEEIPQSILSIIQNTTTNNNNNNNNTFDNGDNEDVDESDESDDNEEDETGDEEAYKNI 331
>UNIPROTKB|Q8WXA9 [details] [associations]
symbol:SREK1 "Splicing regulatory glutamine/lysine-rich
protein 1" species:9606 "Homo sapiens" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005681 "spliceosomal complex" evidence=IEA]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0008380 "RNA
splicing" evidence=IEA] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005730 "nucleolus" evidence=IDA] [GO:0005739 "mitochondrion"
evidence=IDA] [GO:0043231 "intracellular membrane-bounded
organelle" evidence=IDA] InterPro:IPR000504 InterPro:IPR012677
PROSITE:PS50102 SMART:SM00360 GO:GO:0005739 GO:GO:0005634
GO:GO:0008380 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0005681 GO:GO:0003676 eggNOG:NOG277302 KO:K13165
EMBL:AF459094 EMBL:BC047322 EMBL:BC067770 EMBL:BC112343
IPI:IPI00103497 IPI:IPI00375462 RefSeq:NP_001070667.1
RefSeq:NP_001257421.1 RefSeq:NP_631907.1 UniGene:Hs.49367
UniGene:Hs.519347 ProteinModelPortal:Q8WXA9 SMR:Q8WXA9
IntAct:Q8WXA9 STRING:Q8WXA9 PhosphoSite:Q8WXA9 DMDM:37537968
PaxDb:Q8WXA9 PeptideAtlas:Q8WXA9 PRIDE:Q8WXA9
Ensembl:ENST00000334121 Ensembl:ENST00000380918 GeneID:140890
KEGG:hsa:140890 UCSC:uc003jun.3 UCSC:uc003juo.3 CTD:140890
GeneCards:GC05P065435 HGNC:HGNC:17882 HPA:HPA037674 MIM:609268
neXtProt:NX_Q8WXA9 PharmGKB:PA38255 HOVERGEN:HBG079174
InParanoid:Q8WXA9 OMA:EKEQDKD OrthoDB:EOG4K3KWS ChiTaRS:SREK1
GenomeRNAi:140890 NextBio:84548 ArrayExpress:Q8WXA9 Bgee:Q8WXA9
CleanEx:HS_SFRS12 Genevestigator:Q8WXA9 GermOnline:ENSG00000153914
Uniprot:Q8WXA9
Length = 508
Score = 122 (48.0 bits), Expect = 0.00046, P = 0.00046
Identities = 31/92 (33%), Positives = 48/92 (52%)
Query: 749 EFAKRISNVNSKEEKSDAERERSR-RLHDRSSQREKDRS-DEDNNRTRDEHKEKILDRDR 806
E K +E + + E+E+ R + DR +REKDR D++ +R R+ KE DRD+
Sbjct: 272 ERVKEKDREKEREREKEREKEKERGKNKDRDKEREKDREKDKEKDREREREKEHEKDRDK 331
Query: 807 DREHGLDKVKT--PDNKKLLDAKQLIDMIPKT 836
++E DK K D K +D K+ D +T
Sbjct: 332 EKEKEQDKEKEREKDRSKEIDEKRKKDKKSRT 363
>TAIR|locus:504955937 [details] [associations]
symbol:AT2G22795 "AT2G22795" species:3702 "Arabidopsis
thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0008150
"biological_process" evidence=ND] [GO:0005794 "Golgi apparatus"
evidence=IDA] [GO:0005768 "endosome" evidence=IDA] [GO:0005802
"trans-Golgi network" evidence=IDA] GO:GO:0005794 EMBL:CP002685
GO:GO:0005768 GO:GO:0005802 IPI:IPI00534353 RefSeq:NP_850032.1
UniGene:At.45724 UniGene:At.74141 PRIDE:F4IKG5
EnsemblPlants:AT2G22795.1 GeneID:816810 KEGG:ath:AT2G22795
OMA:ESTCRKT Uniprot:F4IKG5
Length = 734
Score = 81 (33.6 bits), Expect = 0.00047, Sum P(3) = 0.00047
Identities = 19/89 (21%), Positives = 39/89 (43%)
Query: 751 AKRISNVNSKEEKSDAERERSRRLHDRSSQREKDRSDEDNNRTRDEHKEKILDRDRDREH 810
++ S V+S+EE E E + S + KDR E + +E+ +D++ + +
Sbjct: 416 SQETSEVSSQEESKGKESETKDKEESSSQEESKDRETETKEKEESSSQEETMDKETEAKE 475
Query: 811 GLDKVKTPDNKKLLDAKQLIDMIPKTKEE 839
++ N+ K + +TKE+
Sbjct: 476 KVESSSQEKNEDKETEKIESSFLEETKEK 504
Score = 77 (32.2 bits), Expect = 0.00047, Sum P(3) = 0.00047
Identities = 35/143 (24%), Positives = 63/143 (44%)
Query: 320 QDAGAGKEDESVQSVEKNEPTKSPEN--LKDNE-TGNKESH-DPTNFGVVTEEDRKADQE 375
+D G G E+ E++E + +N ++NE +G +ES + TEE+ K+ E
Sbjct: 146 RDNGGGTEENEKSGTEESEVEERKDNGGTEENEKSGTEESEVEERKDNGGTEENEKSGTE 205
Query: 376 ALEKLTCMVEERLKTNXXXXXXXQTTADGSGISNSELPAKARDGDSDVDMIRNDIAEDKL 435
E VEER K N + SG SE+ K +G ++ ++ E ++
Sbjct: 206 ESE-----VEER-KENGGTEENEK-----SGSEESEVEEKKDNGGTEESREKSGTEESEV 254
Query: 436 DDETTSDTKASDHDRPETSSPDR 458
+++ D +S+ E +R
Sbjct: 255 EEK--KDNGSSEESEVEEKKENR 275
Score = 58 (25.5 bits), Expect = 0.00047, Sum P(3) = 0.00047
Identities = 19/70 (27%), Positives = 34/70 (48%)
Query: 620 NGSLAEESAVESK----GMDVEHDYHDDSIRENHMAGDPSSQNGNGDESTNVPIAASDMR 675
NGS +EES VE K G+D + + I E + N GD++++ + S+ +
Sbjct: 260 NGS-SEESEVEEKKENRGIDESEESKEKDIDEKANIEEARENNYKGDDASSEVVHESEEK 318
Query: 676 QSGNVPARKL 685
S + + K+
Sbjct: 319 TSESENSEKV 328
>MGI|MGI:1859638 [details] [associations]
symbol:Pqbp1 "polyglutamine binding protein 1" species:10090
"Mus musculus" [GO:0003674 "molecular_function" evidence=ND]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005737 "cytoplasm"
evidence=IDA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0010494 "cytoplasmic stress
granule" evidence=IDA] [GO:0034063 "stress granule assembly"
evidence=ISO] [GO:0071598 "neuronal ribonucleoprotein granule"
evidence=IDA] InterPro:IPR001202 Pfam:PF00397 PROSITE:PS01159
PROSITE:PS50020 SMART:SM00456 MGI:MGI:1859638 GO:GO:0005634
GO:GO:0006355 GO:GO:0006351 SUPFAM:SSF51045 GO:GO:0010494
GO:GO:0034063 GO:GO:0071598 CTD:10084 eggNOG:NOG265480
GeneTree:ENSGT00390000001905 HOGENOM:HOG000231359
HOVERGEN:HBG053064 KO:K12865 OrthoDB:EOG4NCMF0 EMBL:AJ250406
EMBL:AJ296289 EMBL:AK077652 EMBL:BC009657 EMBL:BC051673
IPI:IPI00457950 RefSeq:NP_001239457.1 RefSeq:NP_001239458.1
RefSeq:NP_062351.2 UniGene:Mm.14616 ProteinModelPortal:Q91VJ5
SMR:Q91VJ5 STRING:Q91VJ5 PhosphoSite:Q91VJ5 PRIDE:Q91VJ5
Ensembl:ENSMUST00000033497 Ensembl:ENSMUST00000115654
Ensembl:ENSMUST00000115655 GeneID:54633 KEGG:mmu:54633
InParanoid:Q91VJ5 NextBio:311456 Bgee:Q91VJ5 CleanEx:MM_PQBP1
Genevestigator:Q91VJ5 GermOnline:ENSMUSG00000031157 Uniprot:Q91VJ5
Length = 263
Score = 117 (46.2 bits), Expect = 0.00048, P = 0.00048
Identities = 40/119 (33%), Positives = 61/119 (51%)
Query: 736 VSGANP--PNLAAAAEFAKRISNVNSK-EEKSDAERERSRRLH---DRSSQR-----EK- 783
VS +P PN AK++ N N+ E+KSD E+ R H DRS ++ EK
Sbjct: 73 VSWLSPHDPNFVVTKS-AKKVRNNNADAEDKSDRNLEKVDRNHEKSDRSHEKPDRSHEKA 131
Query: 784 DRSDEDNNRTRDEHKEKI---LDRDRDREHGLDKVKTPDNK-KLLDAKQLIDMIPKTKE 838
DR+ E N+R R+ + +K+ DRDR+RE DK + K + ++ + PK K+
Sbjct: 132 DRNHEKNDRERERNYDKVDRERDRDRERERAFDKADREEGKDRRHHRREELAPYPKNKK 190
>UNIPROTKB|F1LP40 [details] [associations]
symbol:Rdbp "Protein Rdbp" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005739
"mitochondrion" evidence=IEA] [GO:0032021 "NELF complex"
evidence=IEA] [GO:0034244 "negative regulation of transcription
elongation from RNA polymerase II promoter" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 RGD:1303325 GO:GO:0005739 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0034244 GO:GO:0032021
GeneTree:ENSGT00630000089917 OMA:GYEERSG IPI:IPI00422013
Ensembl:ENSRNOT00000000478 ArrayExpress:F1LP40 Uniprot:F1LP40
Length = 344
Score = 119 (46.9 bits), Expect = 0.00052, P = 0.00052
Identities = 32/87 (36%), Positives = 49/87 (56%)
Query: 723 DYSTEELQAAQPHVSGANPPNLAAAAEFAKRISNVNSKEEKSDAERERSRRLHDRSSQRE 782
D+S EE A+ S A+PP + S+ S++ D ER+R R DR +R+
Sbjct: 142 DWSYEEHSGAR---SSASPPRSRSRDR-----SHDRSRDRDRDKERDRDR---DRDRERD 190
Query: 783 KDRSDEDNNRTRDEHKEKILDRDRDRE 809
KD+ D D +R RD+ +++ DR+RDRE
Sbjct: 191 KDK-DRDRDRDRDKERDRDRDRERDRE 216
>RGD|1303325 [details] [associations]
symbol:Nelfe "negative elongation factor complex member E"
species:10116 "Rattus norvegicus" [GO:0005634 "nucleus"
evidence=ISO] [GO:0005739 "mitochondrion" evidence=ISO] [GO:0032021
"NELF complex" evidence=ISO] [GO:0034244 "negative regulation of
transcription elongation from RNA polymerase II promoter"
evidence=ISO] [GO:0005730 "nucleolus" evidence=ISO]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 RGD:1303325 GO:GO:0005739 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:BX883045 GO:GO:0034244
EMBL:CH474121 GO:GO:0032021 CTD:7936 HOGENOM:HOG000232089
HOVERGEN:HBG052598 KO:K15182 OrthoDB:EOG4PNXJ1 IPI:IPI00422013
EMBL:BC079427 RefSeq:NP_001159373.1 RefSeq:NP_997713.1
UniGene:Rn.16164 SMR:Q6MG75 STRING:Q6MG75 GeneID:294258
KEGG:rno:294258 UCSC:RGD:1303325 eggNOG:NOG247039 InParanoid:Q6MG75
NextBio:637845 Genevestigator:Q6MG75 Uniprot:Q6MG75
Length = 369
Score = 119 (46.9 bits), Expect = 0.00059, P = 0.00059
Identities = 32/87 (36%), Positives = 49/87 (56%)
Query: 723 DYSTEELQAAQPHVSGANPPNLAAAAEFAKRISNVNSKEEKSDAERERSRRLHDRSSQRE 782
D+S EE A+ S A+PP + S+ S++ D ER+R R DR +R+
Sbjct: 167 DWSYEEHSGAR---SSASPPRSRSRDR-----SHDRSRDRDRDKERDRDR---DRDRERD 215
Query: 783 KDRSDEDNNRTRDEHKEKILDRDRDRE 809
KD+ D D +R RD+ +++ DR+RDRE
Sbjct: 216 KDK-DRDRDRDRDKERDRDRDRERDRE 241
>DICTYBASE|DDB_G0276577 [details] [associations]
symbol:fray2 "FRAY subfamily protein kinase"
species:44689 "Dictyostelium discoideum" [GO:0016772 "transferase
activity, transferring phosphorus-containing groups" evidence=IEA]
[GO:0006468 "protein phosphorylation" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0004672 "protein kinase activity"
evidence=IEA] [GO:0046872 "metal ion binding" evidence=IEA]
[GO:0016740 "transferase activity" evidence=IEA] [GO:0016310
"phosphorylation" evidence=IEA] [GO:0016301 "kinase activity"
evidence=IEA] [GO:0004674 "protein serine/threonine kinase
activity" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000719 InterPro:IPR002290
InterPro:IPR011009 InterPro:IPR017441 Pfam:PF00069 PROSITE:PS00107
PROSITE:PS00108 PROSITE:PS50011 SMART:SM00220
dictyBase:DDB_G0276577 GO:GO:0005524 GO:GO:0046872 eggNOG:COG0515
SUPFAM:SSF56112 GO:GO:0004674 GenomeReviews:CM000151_GR
EMBL:AAFI02000015 HSSP:Q13153 RefSeq:XP_643160.1
ProteinModelPortal:Q551H4 STRING:Q551H4 EnsemblProtists:DDB0229911
GeneID:8620567 KEGG:ddi:DDB_G0276577 KO:K08835 OMA:ATHISYL
Uniprot:Q551H4
Length = 1028
Score = 120 (47.3 bits), Expect = 0.00059, Sum P(2) = 0.00059
Identities = 28/76 (36%), Positives = 39/76 (51%)
Query: 752 KRISNVNSKEEKSDAERERSR--RLHDRSSQREKDRSDEDNNRTRDEHKEKILDRDRDRE 809
K N S+ D ERER R R DR +RE++R D D R RD +++ DR RDRE
Sbjct: 743 KTYKNSRSRNVSRDRERERDRHNRSRDRDRERERER-DRDRERDRDRSRDRSRDRSRDRE 801
Query: 810 HGLDKVKTPDNKKLLD 825
+ ++ D + D
Sbjct: 802 RDRSRDRSRDRDRSRD 817
Score = 54 (24.1 bits), Expect = 0.00059, Sum P(2) = 0.00059
Identities = 20/84 (23%), Positives = 31/84 (36%)
Query: 653 DPSSQNGNGDESTNVPIAASDMRQSGNVPARKLGFGLVGSGKRTAVPSVFHVEXXXXXXX 712
+PS+ N N + T + S + P+ G S RT+ P+ H
Sbjct: 409 NPSNNNNNNNNKTKENLTQSPFETPSHTPSTSPGS--TPSHSRTSTPTSNHT--ALGSSS 464
Query: 713 XXXMRPLVPIDYSTE-ELQAAQPH 735
P+VP+ T + AA H
Sbjct: 465 TVVPPPVVPLTLPTAIPVTAAAYH 488
>DICTYBASE|DDB_G0271832 [details] [associations]
symbol:DDB_G0271832 "Zinc finger CCHC
domain-containing protein 7" species:44689 "Dictyostelium
discoideum" [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR001878
PROSITE:PS50158 SMART:SM00343 dictyBase:DDB_G0271832 GO:GO:0008270
GO:GO:0003676 EMBL:AAFI02000006 Gene3D:4.10.60.10 SUPFAM:SSF57756
RefSeq:XP_645525.1 ProteinModelPortal:Q55AJ7
EnsemblProtists:DDB0216923 GeneID:8618154 KEGG:ddi:DDB_G0271832
eggNOG:NOG260401 InParanoid:Q55AJ7 Uniprot:Q55AJ7
Length = 772
Score = 122 (48.0 bits), Expect = 0.00060, Sum P(2) = 0.00060
Identities = 26/68 (38%), Positives = 43/68 (63%)
Query: 755 SNVNSKEEKSDAERERSRRLHDRSSQREKDRSDEDNNRTRDEHKEKILDRDRDREHGLDK 814
SN S EEK+D ++++ + ++ ++EKD+ D+ N++TR+ +EK D D D LDK
Sbjct: 580 SNKESSEEKNDKKKKKKNKKGNQEKEKEKDKKDK-NHKTRERDREK--DNDIDSMVDLDK 636
Query: 815 VKTPDNKK 822
VK +N K
Sbjct: 637 VKNNNNNK 644
Score = 49 (22.3 bits), Expect = 0.00060, Sum P(2) = 0.00060
Identities = 28/133 (21%), Positives = 52/133 (39%)
Query: 327 EDESVQSVEKNEPTKSPENLKDNETGNKESHDPTNFGVVTEEDRKADQEALEKLTCMVEE 386
+D+ + +K++ K + K+ E KE D ++D+K ++ +K EE
Sbjct: 110 KDKKDKKDKKDKKDKKDKKEKEKEKDKKEKKDKKEKDKKEKKDKKDKKDKKDK---NAEE 166
Query: 387 RLKTNXXXXXXXQTTADGSGISNSELPAKARDGDSDVDMIRNDIAEDKLDDETTSDTKAS 446
+ S I E K D D+ M+R + E +++ T +
Sbjct: 167 NKELEQAKPIETPEDILKSFIGYDE---KENIEDDDIFMLRAALGE--FEEKETIKEEII 221
Query: 447 DHDRPETSSPDRS 459
+ R TSS +S
Sbjct: 222 NSVRQSTSSVIKS 234
>UNIPROTKB|E9PD43 [details] [associations]
symbol:NELFE "Protein NELFE" species:9606 "Homo sapiens"
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0005739 "mitochondrion" evidence=IDA]
GO:GO:0005739 GO:GO:0005634 EMBL:AL645922 HGNC:HGNC:13974
IPI:IPI01009325 ProteinModelPortal:E9PD43 Ensembl:ENST00000436289
ArrayExpress:E9PD43 Bgee:E9PD43 Uniprot:E9PD43
Length = 260
Score = 116 (45.9 bits), Expect = 0.00061, P = 0.00061
Identities = 34/88 (38%), Positives = 47/88 (53%)
Query: 723 DYSTEELQAAQPHVSGANPPNLAAAAEFAKRISNVNSKEEKSDAERERSR-RLHDRSSQR 781
D+ EE A H S A+PP + S+ +++ D ER+R R R DR R
Sbjct: 162 DWGYEERSGA--H-SSASPPRSRSRDR-----SHERNRDRDRDRERDRDRDRDRDRERDR 213
Query: 782 EKDRSDEDNNRTRDEHKEKILDRDRDRE 809
++DR D D +R RD +E+ DRDRDRE
Sbjct: 214 DRDR-DRDRDRERDRDRER--DRDRDRE 238
>UNIPROTKB|F8WJN3 [details] [associations]
symbol:CPSF6 "Cleavage and polyadenylation-specificity
factor subunit 6" species:9606 "Homo sapiens" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005730 "nucleolus" evidence=IDA] InterPro:IPR000504
InterPro:IPR012677 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 HGNC:HGNC:13871
EMBL:AC020656 IPI:IPI00647126 ProteinModelPortal:F8WJN3 SMR:F8WJN3
Ensembl:ENST00000456847 ArrayExpress:F8WJN3 Bgee:F8WJN3
Uniprot:F8WJN3
Length = 478
Score = 100 (40.3 bits), Expect = 0.00072, Sum P(2) = 0.00072
Identities = 24/69 (34%), Positives = 37/69 (53%)
Query: 754 ISNVNSKEEKSDAERERSRRLHDRSSQREKDRSDEDNNRTRDEHKEKILDRDRDREHGLD 813
+ + SK S + RERSR D S REK R + +R+RD H + +R R+RE D
Sbjct: 404 LHGIESKSYGSGSRRERSRE-RDHSRSREKSRRHK--SRSRDRHDDYYRERSRERERHRD 460
Query: 814 KVKTPDNKK 822
+ + D ++
Sbjct: 461 RDRDRDRER 469
Score = 66 (28.3 bits), Expect = 0.00072, Sum P(2) = 0.00072
Identities = 23/57 (40%), Positives = 25/57 (43%)
Query: 118 PPMMQYPGVP-GQPPNPALRPYAPIP-NGYGAVPAPA---SGLP--------RYPAP 161
PP + +PG P GQPP L P P P GYG P P G P R P P
Sbjct: 201 PPPVLFPGQPFGQPPLGPLPPGPPPPVPGYGPPPGPPPPQQGPPPPPGPFPPRPPGP 257
Score = 65 (27.9 bits), Expect = 0.00090, Sum P(2) = 0.00090
Identities = 31/107 (28%), Positives = 38/107 (35%)
Query: 60 PAPASLPPAPVQSFVPPTQPISYRPVPMSTASQFSPVQNYQSXXXXXXXXXXXXXTMAPP 119
P P PP PV + PP P + P F P T+APP
Sbjct: 218 PLPPG-PPPPVPGYGPPPGPPPPQQGPPPPPGPFPP---------RPPGPLGPPLTLAPP 267
Query: 120 MMQYPGVP--GQPPNPALRP-YAPIPNGYGAVPAPASGLPRYPA-PY 162
PG P PP P + P + P P G + + G P P PY
Sbjct: 268 P-HLPGPPPGAPPPAPHVNPAFFPPPTNSGMPTSDSRGPP--PTDPY 311
>UNIPROTKB|C9JQA1 [details] [associations]
symbol:PQBP1 "Polyglutamine-binding protein 1" species:9606
"Homo sapiens" [GO:0010494 "cytoplasmic stress granule"
evidence=IEA] [GO:0071598 "neuronal ribonucleoprotein granule"
evidence=IEA] [GO:0034063 "stress granule assembly" evidence=IDA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA]
InterPro:IPR001202 Pfam:PF00397 PROSITE:PS50020 SMART:SM00456
GO:GO:0005634 GO:GO:0005737 SUPFAM:SSF51045 GO:GO:0034063
EMBL:AF207550 HOGENOM:HOG000231359 IPI:IPI00644888 HGNC:HGNC:9330
ChiTaRS:PQBP1 ProteinModelPortal:C9JQA1 SMR:C9JQA1 STRING:C9JQA1
PRIDE:C9JQA1 Ensembl:ENST00000443648 ArrayExpress:C9JQA1
Bgee:C9JQA1 Uniprot:C9JQA1
Length = 213
Score = 113 (44.8 bits), Expect = 0.00073, P = 0.00073
Identities = 28/79 (35%), Positives = 44/79 (55%)
Query: 762 EKSDAERERSRRLHDRSSQREKDRSDEDNNRTRDE-HKEKILDRDRDREHGLDKVKTPDN 820
+KSD E+ R HD+S R D+SD D R D+ +E+ DR+RDR+ G DK +
Sbjct: 115 DKSDRSHEKLDRGHDKSD-RGHDKSDRDRERGYDKVDRERERDRERDRDRGYDKADREEG 173
Query: 821 KKLLD-AKQLIDMIPKTKE 838
K+ ++ + PK+K+
Sbjct: 174 KERRHHRREELAPYPKSKK 192
>UNIPROTKB|E9PQ56 [details] [associations]
symbol:PUF60 "Poly(U)-binding-splicing factor PUF60"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC105219 EMBL:AC105049
InterPro:IPR006532 TIGRFAMs:TIGR01645 HGNC:HGNC:17042
IPI:IPI00985156 ProteinModelPortal:E9PQ56 SMR:E9PQ56
Ensembl:ENST00000526459 ArrayExpress:E9PQ56 Bgee:E9PQ56
Uniprot:E9PQ56
Length = 323
Score = 117 (46.2 bits), Expect = 0.00076, P = 0.00076
Identities = 24/71 (33%), Positives = 39/71 (54%)
Query: 220 KVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRL 279
++YV + D + SV + G +KS A+ P+ G KG+GF E+E A+ A+
Sbjct: 209 RIYVASVHQDLSDDDIKSVFEAFGKIKSCTLARDPTTGKHKGYGFIEYEKAQSSQDAVSS 268
Query: 280 LNKFNIDGQEL 290
+N F++ GQ L
Sbjct: 269 MNLFDLGGQYL 279
>UNIPROTKB|E2R1C1 [details] [associations]
symbol:CSTF2T "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR025742
InterPro:IPR026896 Pfam:PF14327 Pfam:PF14304
GeneTree:ENSGT00550000074641 EMBL:AAEX03014924 EMBL:AAEX03014925
Ensembl:ENSCAFT00000024677 Uniprot:E2R1C1
Length = 435
Score = 119 (46.9 bits), Expect = 0.00077, P = 0.00077
Identities = 28/80 (35%), Positives = 41/80 (51%)
Query: 221 VYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLL 280
V+VG I A + + + G+V S++ G PKG+GFCE++ E L A+R L
Sbjct: 22 VFVGNIPYEATEEQLKDIFSEVGSVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNL 81
Query: 281 NKFNIDGQELMLKVDQATRE 300
N G+ L +VD A E
Sbjct: 82 NGREFSGRAL--RVDNAASE 99
>UNIPROTKB|F1PRG0 [details] [associations]
symbol:RBMX2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00600000084414 EMBL:AAEX03026906
Ensembl:ENSCAFT00000029787 Uniprot:F1PRG0
Length = 326
Score = 82 (33.9 bits), Expect = 0.00081, Sum P(2) = 0.00081
Identities = 22/65 (33%), Positives = 34/65 (52%)
Query: 760 KEEKSDAERERSR-RLHDRSSQREKDRSDEDNNRTRDEHKEKILDRDRDREHGLDKVKT- 817
+EE+ + RER R R DR S R RS+ + R R +E+ R R R H D+ +
Sbjct: 261 REEREEKNRERERGRSSDRHSSRHNGRSEGHSRRGRSRSRERSHRRKRAR-HSRDRDSSN 319
Query: 818 PDNKK 822
P +++
Sbjct: 320 PSDRR 324
Score = 80 (33.2 bits), Expect = 0.00081, Sum P(2) = 0.00081
Identities = 32/147 (21%), Positives = 53/147 (36%)
Query: 216 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLR 275
K +++G + ++ V G + + + G KGF F +E +
Sbjct: 32 KDSAWIFLGGLPYELTEGDIICVFSQYGEIVNINLVRDKKTGKSKGFCFLCYEDQRSTIL 91
Query: 276 ALRLLNKFNIDGQELMLKVDQATREYLERYVDXXXXXXXXXXXXQDAGAGKEDESVQSVE 335
A+ N I G+ + +VD + Y R Q+ G G SV S E
Sbjct: 92 AVDNFNGIKIKGRTI--RVDHVSN-Y--RAPKDSEEMDDVTKELQEKGCGAHTPSVSSSE 146
Query: 336 KNEPTKSPENLK-DNETGNKESHDPTN 361
+E K P+ K D + + D N
Sbjct: 147 GSEDDKPPKKYKKDKKEKKRRKKDKEN 173
>UNIPROTKB|A2ABK2 [details] [associations]
symbol:NELFE "Protein NELFE" species:9606 "Homo sapiens"
[GO:0034244 "negative regulation of transcription elongation from
RNA polymerase II promoter" evidence=IEA] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA] [GO:0005739
"mitochondrion" evidence=IDA] GO:GO:0005739 GO:GO:0005634
GO:GO:0034244 EMBL:AL844853 EMBL:AL662849 EMBL:BX005143
EMBL:CR759782 EMBL:CR388219 EMBL:AL645922 EMBL:CR753845
HOGENOM:HOG000232089 HOVERGEN:HBG052598 UniGene:Hs.423935
HGNC:HGNC:13974 IPI:IPI00922214 SMR:A2ABK2 Ensembl:ENST00000411745
Ensembl:ENST00000434518 Ensembl:ENST00000437732
Ensembl:ENST00000453084 Ensembl:ENST00000454913
Ensembl:ENST00000456263 Uniprot:A2ABK2
Length = 294
Score = 116 (45.9 bits), Expect = 0.00081, P = 0.00081
Identities = 34/88 (38%), Positives = 47/88 (53%)
Query: 723 DYSTEELQAAQPHVSGANPPNLAAAAEFAKRISNVNSKEEKSDAERERSR-RLHDRSSQR 781
D+ EE A H S A+PP + S+ +++ D ER+R R R DR R
Sbjct: 167 DWGYEERSGA--H-SSASPPRSRSRDR-----SHERNRDRDRDRERDRDRDRDRDRERDR 218
Query: 782 EKDRSDEDNNRTRDEHKEKILDRDRDRE 809
++DR D D +R RD +E+ DRDRDRE
Sbjct: 219 DRDR-DRDRDRERDRDRER--DRDRDRE 243
>UNIPROTKB|H0YEM1 [details] [associations]
symbol:PUF60 "Poly(U)-binding-splicing factor PUF60"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC105219 EMBL:AC105049
InterPro:IPR006532 TIGRFAMs:TIGR01645 HGNC:HGNC:17042
Ensembl:ENST00000527744 Uniprot:H0YEM1
Length = 336
Score = 117 (46.2 bits), Expect = 0.00082, P = 0.00082
Identities = 24/71 (33%), Positives = 39/71 (54%)
Query: 220 KVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRL 279
++YV + D + SV + G +KS A+ P+ G KG+GF E+E A+ A+
Sbjct: 225 RIYVASVHQDLSDDDIKSVFEAFGKIKSCTLARDPTTGKHKGYGFIEYEKAQSSQDAVSS 284
Query: 280 LNKFNIDGQEL 290
+N F++ GQ L
Sbjct: 285 MNLFDLGGQYL 295
>UNIPROTKB|F1NA97 [details] [associations]
symbol:LOC426301 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00630000089747 InterPro:IPR006532 TIGRFAMs:TIGR01645
EMBL:AADN02016569 EMBL:AADN02016570 EMBL:AADN02016571
EMBL:AADN02016572 EMBL:AADN02016573 EMBL:AADN02016574
IPI:IPI00596858 Ensembl:ENSGALT00000036523 ArrayExpress:F1NA97
Uniprot:F1NA97
Length = 366
Score = 117 (46.2 bits), Expect = 0.00096, P = 0.00096
Identities = 24/71 (33%), Positives = 39/71 (54%)
Query: 220 KVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRL 279
++YV + D + SV + G +KS A+ P+ G KG+GF E+E A+ A+
Sbjct: 184 RIYVASVHQDLSDDDIKSVFEAFGKIKSCTLARDPTTGKHKGYGFIEYEKAQSSQDAVSS 243
Query: 280 LNKFNIDGQEL 290
+N F++ GQ L
Sbjct: 244 MNLFDLGGQYL 254
>UNIPROTKB|K7GQ47 [details] [associations]
symbol:RDBP "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
Gene3D:3.30.70.330 GeneTree:ENSGT00630000089917 EMBL:CT956038
Ensembl:ENSSSCT00000032936 Uniprot:K7GQ47
Length = 373
Score = 117 (46.2 bits), Expect = 0.00099, P = 0.00099
Identities = 26/56 (46%), Positives = 34/56 (60%)
Query: 755 SNVNSKEEKSDAERERSR-RLHDRSSQREKDRSDEDNNRTRDEHKEKILDRDRDRE 809
S S+E D +RER R R DR R++DR D D +R RD +++ DRDRDRE
Sbjct: 182 SRDRSRERNRDRDRERDRDRDRDRDRDRDRDR-DRDRDRDRDRDRDRDRDRDRDRE 236
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.310 0.128 0.369 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 935 684 0.00079 121 3 11 23 0.50 34
36 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 73
No. of states in DFA: 617 (66 KB)
Total size of DFA: 353 KB (2175 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 88.25u 0.12s 88.37t Elapsed: 00:00:04
Total cpu time: 88.26u 0.12s 88.38t Elapsed: 00:00:04
Start: Tue May 21 18:54:05 2013 End: Tue May 21 18:54:09 2013