BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 002335
(935 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P49756|RBM25_HUMAN RNA-binding protein 25 OS=Homo sapiens GN=RBM25 PE=1 SV=3
Length = 843
Score = 113 bits (282), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 47/104 (45%), Positives = 72/104 (69%)
Query: 827 KQLIDMIPKTKEELFSYEINWAVYDKHELHERMRPWISKKITEFLGEEETTLVDYIVSST 886
K LI+ IP K ELF+Y ++W++ D + R+RPWI+KKI E++GEEE TLVD++ S
Sbjct: 739 KSLIEKIPTAKPELFAYPLDWSIVDSILMERRIRPWINKKIIEYIGEEEATLVDFVCSKV 798
Query: 887 QDHVKASQMLELLQTILDDEAEMFVLKMWRMLIFEIKKVETGLA 930
H +L+ + +LD+EAE+F++KMWR+LI+E + + GL
Sbjct: 799 MAHSSPQSILDDVAMVLDEEAEVFIVKMWRLLIYETEAKKIGLV 842
Score = 68.2 bits (165), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 57/189 (30%), Positives = 80/189 (42%), Gaps = 13/189 (6%)
Query: 121 MQYPGVPGQPPNPALRPYAPIPNGYGAVPAPASGLPRYPAPYPSMVRPAFPPRPPGPVGV 180
M +P +PP IP P P P + P P +
Sbjct: 1 MSFPPHLNRPPMGIPALPPGIPPPQFPGFPPPVPPGTPMIPVPMSI------MAPAPTVL 54
Query: 181 LPSVARPPVPGIPGVRPIMPPVVRPVPLPTVTPAEKPQTKVYVGKIAPTADSDFVLSVLK 240
+P+V+ V G R P + P T V+VG I+ A + +L
Sbjct: 55 VPTVSM--VGKHLGARKDHPGLKAKENDENCGPT----TTVFVGNISEKASDMLIRQLLA 108
Query: 241 VCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVDQATRE 300
CG V SWKR Q S G + FGFCE++ E LRALRLL+ I ++L++KVD T+
Sbjct: 109 KCGLVLSWKRVQGAS-GKLQAFGFCEYKEPESTLRALRLLHDLQIGEKKLLVKVDAKTKA 167
Query: 301 YLERYVDKK 309
L+ + KK
Sbjct: 168 QLDEWKAKK 176
Score = 67.8 bits (164), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 57/195 (29%), Positives = 85/195 (43%), Gaps = 29/195 (14%)
Query: 217 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRA 276
P T V+VG I+ A + +L CG V SWKR Q S G + FGFCE++ E LRA
Sbjct: 85 PTTTVFVGNISEKASDMLIRQLLAKCGLVLSWKRVQGAS-GKLQAFGFCEYKEPESTLRA 143
Query: 277 LRLLNKFNIDGQELMLKVDQATREYLERYVDKKTENTKKLKETQDAGAGKEDESVQSVEK 336
LRLL+ I ++L++KVD T+ L+ + KK + + E+V
Sbjct: 144 LRLLHDLQIGEKKLLVKVDAKTKAQLDEWKAKK----------KASNGNARPETV----- 188
Query: 337 NEPTKSPENLKDNETGNKESHDPTNFGVVTEE--------DRKADQEALEKLTCMVEERL 388
T E D ET ++ V+ E +++D +K E+
Sbjct: 189 ---TNDDEEALDEETKRRDQMIKGAIEVLIREYSSELNAPSQESDSHPRKKKKEKKEDIF 245
Query: 389 KTNPLPP--PPPQTT 401
+ P+ P P P T
Sbjct: 246 RRFPVAPLIPYPLIT 260
>sp|B2RY56|RBM25_MOUSE RNA-binding protein 25 OS=Mus musculus GN=Rbm25 PE=1 SV=2
Length = 838
Score = 112 bits (281), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 47/104 (45%), Positives = 72/104 (69%)
Query: 827 KQLIDMIPKTKEELFSYEINWAVYDKHELHERMRPWISKKITEFLGEEETTLVDYIVSST 886
K LI+ IP K ELF+Y ++W++ D + R+RPWI+KKI E++GEEE TLVD++ S
Sbjct: 734 KSLIEKIPTAKPELFAYPLDWSIVDSILMERRIRPWINKKIIEYIGEEEATLVDFVCSKV 793
Query: 887 QDHVKASQMLELLQTILDDEAEMFVLKMWRMLIFEIKKVETGLA 930
H +L+ + +LD+EAE+F++KMWR+LI+E + + GL
Sbjct: 794 MAHSSPQSILDDVAMVLDEEAEVFIVKMWRLLIYETEAKKIGLV 837
Score = 79.7 bits (195), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 53/149 (35%), Positives = 70/149 (46%), Gaps = 23/149 (15%)
Query: 192 IPGVRPIMPPVVRPVPLPTVTPAEK---------------------PQTKVYVGKIAPTA 230
IP IM P V +PTV+ K P T V+VG I+ A
Sbjct: 40 IPVPMSIMAPAP-TVLVPTVSMVGKHLGARKDHPGLKLKENDENCGPTTTVFVGNISEKA 98
Query: 231 DSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQEL 290
+ +L CG V SWKR Q S G + FGFCE++ E LRALRLL+ I ++L
Sbjct: 99 SDMLIRQLLAKCGLVLSWKRVQGAS-GKLQAFGFCEYKEPESTLRALRLLHDLQIGEKKL 157
Query: 291 MLKVDQATREYLERYVDKKTENTKKLKET 319
++KVD T+ L+ + KK N ET
Sbjct: 158 LVKVDAKTKAQLDEWKAKKKANGNARPET 186
>sp|Q8IDX6|RBP2A_PLAF7 Reticulocyte-binding protein 2 homolog a OS=Plasmodium falciparum
(isolate 3D7) GN=PF13_0198 PE=3 SV=1
Length = 3130
Score = 55.1 bits (131), Expect = 3e-06, Method: Composition-based stats.
Identities = 41/137 (29%), Positives = 80/137 (58%), Gaps = 15/137 (10%)
Query: 477 KEREIDRYEREAERERVRKEREQRRKIEEAEREYERCLKDWEYREREREKERQYEKEKEK 536
K +E +R ++E E +R +ER +R K E+ ++E E ++ E ++E +RQ ++ +K
Sbjct: 2740 KRQEQERLQKEEELKRQEQERLEREKQEQLQKEEELKRQEQERLQKEEALKRQEQERLQK 2799
Query: 537 ERERKRKKEILYDEEEDEDDSRKRWRRSVLEEKRRKRIR-EKEEDLADEVREEEEIAVAK 595
E E KR+++ + E+ E ++ E KR+++ R +KEE L R+E+E
Sbjct: 2800 EEELKRQEQERLEREKQEQLQKEE------ELKRQEQERLQKEEALK---RQEQE----- 2845
Query: 596 RRAEEEQLQQQQRDALK 612
R +EE+L++Q+++ L+
Sbjct: 2846 RLQKEEELKRQEQERLE 2862
Score = 37.0 bits (84), Expect = 0.77, Method: Composition-based stats.
Identities = 49/222 (22%), Positives = 105/222 (47%), Gaps = 27/222 (12%)
Query: 444 KASDHDRPETSSPDRSRVHDRRGRDKERDLKREKEREIDRYERE---AERERVRKEREQR 500
K + +R + + + +R R+K+ L +KE E+ R E+E E R+E+E+
Sbjct: 2790 KRQEQERLQKEEELKRQEQERLEREKQEQL--QKEEELKRQEQERLQKEEALKRQEQERL 2847
Query: 501 RKIEEAEREYERCLKDWEYREREREKERQYEKEKE-----KERERKRKKEILYDEEEDED 555
+K EE +R+ + L+ + ERE+ + + E + K+ K K EI+ +++
Sbjct: 2848 QKEEELKRQEQERLERKKIELAEREQHIKSKLESDMVKIIKDELTKEKDEIIKNKDIKLR 2907
Query: 556 DS-RKRWRRSV----------LEEKRRKRIREKEEDLADEVRE--EEEIAVAKRRAEEEQ 602
S ++W + + L K + I++ E L + + ++ + +R E
Sbjct: 2908 HSLEQKWLKHLQNILSLKIDSLLNKNDEVIKDNETQLKTNILNSLKNQLYLNLKRELNEI 2967
Query: 603 LQQQQRDALKLLSDNA-VNGSLAEESAVESKGMDVEHDYHDD 643
+++ + + K+L N VN SL +++ ++ +D++ H D
Sbjct: 2968 IKEYEENQKKILHSNQLVNDSLEQKT---NRLVDIKPTKHGD 3006
>sp|F1QBY1|NIPLB_DANRE Nipped-B-like protein B OS=Danio rerio GN=nipblb PE=2 SV=1
Length = 2876
Score = 45.1 bits (105), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 47/128 (36%), Positives = 74/128 (57%), Gaps = 20/128 (15%)
Query: 444 KASDHDRPETSSPDRSRVHDRRGRDKERDLKREKEREIDRYE-REAERERVRKEREQRRK 502
K + DR + DR +V D+ RDK R+ R+K RE DR + RE +RE++R ER+ R K
Sbjct: 836 KGQEKDRDKVREKDRDKVRDK-DRDKVREKDRDKVREKDRDKLREKDREKIR-ERD-RDK 892
Query: 503 IEEAEREYERCLKDWEYREREREKERQYEKEKEKER------------ERKRKKEILYDE 550
E +R+ E+ + RE+++EKER +++KE+E+ E+KR KE+ D+
Sbjct: 893 GREKDRDKEQV----KTREKDQEKERLKDRDKEREKVRDKGRDRDRDQEKKRNKELTEDK 948
Query: 551 EEDEDDSR 558
+ E SR
Sbjct: 949 QAPEQRSR 956
Score = 43.9 bits (102), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 53/165 (32%), Positives = 99/165 (60%), Gaps = 16/165 (9%)
Query: 444 KASDHDRPETSSPDRSRVHDR---RGRDKERDLKREKEREIDRYEREAERERVRKEREQR 500
K + D+ + DR + D+ +GR+K++D + EK RE DR ++E E+ R E++Q
Sbjct: 764 KCREKDQDKELEKDREKNQDKELEKGREKDQDKELEKGREKDR-DKEMEKAR---EKDQD 819
Query: 501 RKIEEAEREYERCLKDWEYREREREKERQYEKEKEKERERKRKKEILYDEEEDEDDSRKR 560
+++E+ RE KD + +E E+ +E+ +K +EK+R++ R K+ E+D D R++
Sbjct: 820 KELEKG-RE-----KDQD-KELEKGQEKDRDKVREKDRDKVRDKDRDKVREKDRDKVREK 872
Query: 561 WRRSVLEEKRRKRIREKEEDLADEV-REEEEIAVAKRRAEEEQLQ 604
R L EK R++IRE++ D E R++E++ ++ E+E+L+
Sbjct: 873 -DRDKLREKDREKIRERDRDKGREKDRDKEQVKTREKDQEKERLK 916
>sp|O42854|YFHH_SCHPO SH3 domain-containing protein C23A1.17 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=SPAC23A1.17 PE=1 SV=1
Length = 1611
Score = 42.0 bits (97), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 57/152 (37%), Positives = 69/152 (45%), Gaps = 9/152 (5%)
Query: 63 ASLPPAPVQSFVPPTQ-PISYRPVPMSTASQFSPVQNYQSPVVQPPGVGGVAVTMAPPMM 121
A PP PV S PP P S PVP S++ S +P + P + A + APP+
Sbjct: 1029 ADAPPIPVPSTAPPVPIPTSTPPVPKSSSGAPSAPPPVPAPSSEIPSIP--APSGAPPVP 1086
Query: 122 QYPGVPGQPPNPALRPYAPIPN-GYGAVPAPASGLPRYPAPYPSMVRPAFPPRPPGPVGV 180
G+P P P P P+ VPAP SG P P P PS+ P P P
Sbjct: 1087 APSGIPPVPKPSVAAPPVPKPSVAVPPVPAP-SGAP--PVPKPSVAAPPVPVPSGAPPVP 1143
Query: 181 LPSVARPPVPGIPGVRPIMPPVVR--PVPLPT 210
PSVA PPVP G P+ P V PVP P+
Sbjct: 1144 KPSVAAPPVPAPSGAPPVPKPSVAAPPVPAPS 1175
>sp|Q8SX83|SPEN_DROME Protein split ends OS=Drosophila melanogaster GN=spen PE=1 SV=2
Length = 5560
Score = 35.0 bits (79), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 39/106 (36%), Positives = 58/106 (54%), Gaps = 27/106 (25%)
Query: 474 KREKEREIDRYEREAERERVRKEREQRRKIEEAEREYERCLKDWEYRERE-REKERQYEK 532
K +KE+EI RE+ +E+EQR E RE E L+D + RE+E REKE
Sbjct: 1998 KEQKEKEI--------REKDLREKEQR---ERDNREKE--LRDKDLREKEMREKE----- 2039
Query: 533 EKEKERERKRKKEILYDEEEDEDDSRKRWRRS--VLEEKRRKRIRE 576
++E+E R+K D+ E E +++ RR+ V +E R R+RE
Sbjct: 2040 --QREKELHREK----DQREREHREKEQSRRAMDVEQEGRGGRMRE 2079
>sp|P46504|YLX8_CAEEL Uncharacterized protein F23F12.8 OS=Caenorhabditis elegans
GN=F23F12.8 PE=4 SV=2
Length = 980
Score = 34.7 bits (78), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 34/108 (31%), Positives = 61/108 (56%), Gaps = 4/108 (3%)
Query: 496 EREQRRKIEEAEREYERCLKDWEYREREREKERQYEKEKEKERERKRKKEILYDEEEDED 555
ER+Q+ K E+ E+E R K+ + RE ER ++ + E E ++ E R+ I ++E
Sbjct: 310 ERQQQEKFEKMEQERLRQEKEEKARELERRRKLE-ESETARQAELDRQATIYAEQERMAM 368
Query: 556 DSRKRWRRSVLEEKRRKRIREKEEDLADE---VREEEEIAVAKRRAEE 600
+ + R LEEK+R+ R ++E++A E +RE E + + ++R E
Sbjct: 369 ERNRELERIRLEEKKRENERVRQEEIAMEISKIRELERLQLERQRKNE 416
>sp|C0H5F4|RBP2B_PLAF7 Reticulocyte binding protein 2 homolog b OS=Plasmodium falciparum
(isolate 3D7) GN=Rh2b PE=3 SV=1
Length = 3179
Score = 34.3 bits (77), Expect = 5.2, Method: Composition-based stats.
Identities = 93/445 (20%), Positives = 177/445 (39%), Gaps = 81/445 (18%)
Query: 463 DRRGRDKERDLKRE--------------KEREIDRYEREAERERVRKERE-QRRKIEEAE 507
+R R+K+ LK+E KE + R E+ER++KE E +R++ E E
Sbjct: 2631 ERLEREKQEQLKKEALKKQEQERQEQQQKEEALKR----QEQERLQKEEELKRQEQERLE 2686
Query: 508 RE-YERCLKDWEYREREREKERQYEKEKEKERERKRKKEILYD---------EEEDEDDS 557
RE E+ K+ E R++E+EK++Q +E E ++K EI+ + E D+ +
Sbjct: 2687 REKQEQLQKEEELRKKEQEKQQQ---RNIQELEEQKKPEIINEALVKGDKILEGSDQRNM 2743
Query: 558 RKRWRRSVLEEKRRKRIREKEEDLADEVREEEEIAVAKRR-AEEEQLQQQQRDALKLLSD 616
++ I E +D++ E I + E Q + + +SD
Sbjct: 2744 ELSKPNVSMDNTNNSPISNSEITESDDIDNSENIHTSHMSDIESTQTSHRSNTHGQQISD 2803
Query: 617 NAVNGSLAEESAVESKGMDVEHDYHDDSIRENHMAGDPSSQNG---------NGDESTNV 667
+ E+ + E H+D I + S N NGD + N
Sbjct: 2804 ------IVEDQITHPSNIGGEKITHNDEISITGERNNISDVNDYSESSNIFENGDSTINT 2857
Query: 668 PI--AASDMRQSGNVPARKLGFGLVGSGKRTAVPSVF-HVEDDDDADKDKKMR-----PL 719
+S +S P +V K++ ++ ++ D+ D+++R +
Sbjct: 2858 STRNTSSTHDESHISPISNAYDHVVSDNKKSMDENIKDKLKIDESITTDEQIRLDDNSNI 2917
Query: 720 VPIDYSTEELQAAQP-----------------HVSGANPPNLAAAAEFAKRISNVN---- 758
V ID ST++ A+ H+ + + E A NVN
Sbjct: 2918 VRID-STDQRDASSHGSSNRDDDEISHVGSDIHMDSVDIHDSIDTDENADHRHNVNSVDS 2976
Query: 759 -SKEEKSDAERERSRRLHDRSSQR--EKDRSDEDNNRTRDEHKEKILDRDRDREHGLDKV 815
S + +D +++ S + D ++ ++ S E ++T H+E I++ ++ +D +
Sbjct: 2977 LSSSDYTDTQKDFSSIIKDGGNKEGHAENESKEYESQTEQTHEEGIMNPNKYSISEVDGI 3036
Query: 816 KTPDNKKLLDAKQLIDMIPKTKEEL 840
K + K ++L+D+ P T L
Sbjct: 3037 KLNEEAKHKITEKLVDIYPSTYRTL 3061
>sp|A2AG50|MA7D2_MOUSE MAP7 domain-containing protein 2 OS=Mus musculus GN=Map7d2 PE=1
SV=1
Length = 781
Score = 33.9 bits (76), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 51/95 (53%), Gaps = 22/95 (23%)
Query: 481 IDRYEREAERERVRKEREQRRKIEEAEREYERCL--KDWEYREREREKERQYEKEKEKER 538
+D + + ER+R+ KER + R E+CL ++ + E+++ + QYEK+ E
Sbjct: 67 MDGFLKSDERQRLAKERREER---------EKCLAAREQQILEKQKRAKLQYEKQIE--- 114
Query: 539 ERKRKKEILYDEEEDEDDSRKRWRRSVLEEKRRKR 573
ER RK E E R+ +R+ +EEKR+++
Sbjct: 115 ERWRKLE--------EQRQREDQKRAAVEEKRKQK 141
>sp|Q5B3C8|NST1_EMENI Stress response protein nst1 OS=Emericella nidulans (strain FGSC A4
/ ATCC 38163 / CBS 112.46 / NRRL 194 / M139) GN=nst1
PE=3 SV=1
Length = 1125
Score = 33.9 bits (76), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 43/132 (32%), Positives = 57/132 (43%), Gaps = 25/132 (18%)
Query: 90 ASQFSPVQNYQSPVVQPPGVGGVAVTMAPPMMQ-YPGVPGQPPN----PALRPYAPIPNG 144
ASQ SP +P+ Q G P++ +PG P P P L P P P
Sbjct: 690 ASQVSP---RSAPLSQSSGSSIPKYGSGHPILHPHPGAPMSPLGRTHPPGLSPSNP-PGL 745
Query: 145 YGAVPAPASG--LPRYP---APYPSMVRPAFPPRPPGPVGVLPSVARPPVPGIPGVRPIM 199
G VP P G LP YP +PY + +R FP P G+ P +PG+ G RP+
Sbjct: 746 SGLVPRPPMGHELPTYPPHSSPYMNQLR-GFP----APNGI------PVLPGMNGTRPMP 794
Query: 200 PPVVRPVPLPTV 211
P P+ P +
Sbjct: 795 PGRGFPLDAPGI 806
>sp|Q5R7F9|MA7D2_PONAB MAP7 domain-containing protein 2 OS=Pongo abelii GN=MAP7D2 PE=2
SV=1
Length = 763
Score = 33.5 bits (75), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 51/95 (53%), Gaps = 22/95 (23%)
Query: 481 IDRYEREAERERVRKEREQRRKIEEAEREYERCL--KDWEYREREREKERQYEKEKEKER 538
++ + + ER+R+ KER + R E+CL ++ + E+++ + QYEK+ E
Sbjct: 46 MEGFLKSGERQRLAKERREER---------EKCLAAREQQILEKQKRAKLQYEKQME--- 93
Query: 539 ERKRKKEILYDEEEDEDDSRKRWRRSVLEEKRRKR 573
ER RK E E R+ +R+ +EEKR+++
Sbjct: 94 ERWRKLE--------EQRQREDQKRAAVEEKRKQK 120
>sp|A6RW62|NST1_BOTFB Stress response protein nst1 OS=Botryotinia fuckeliana (strain
B05.10) GN=nst1 PE=3 SV=1
Length = 1168
Score = 33.1 bits (74), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 56/88 (63%), Gaps = 10/88 (11%)
Query: 458 RSRVHDRRGRDKERDLKREKEREIDRYEREAERERVRKEREQRRKIEEAEREYERCLKDW 517
R+ ++ +D E+ + REI+ E++AE +R++ RE+ RK +EA+++ D
Sbjct: 525 RAMAEEKARKDAEKAAEEASLREIE--EKKAEAQRLK--REENRKKKEAQKK-----ADE 575
Query: 518 EYRER-EREKERQYEKEKEKERERKRKK 544
E R R E EK+R+ ++++E++ E++RK+
Sbjct: 576 EERVRKESEKQRRLQEQRERQAEQERKQ 603
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.309 0.129 0.367
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 394,630,027
Number of Sequences: 539616
Number of extensions: 20824876
Number of successful extensions: 307448
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 2279
Number of HSP's successfully gapped in prelim test: 6809
Number of HSP's that attempted gapping in prelim test: 126890
Number of HSP's gapped (non-prelim): 77386
length of query: 935
length of database: 191,569,459
effective HSP length: 127
effective length of query: 808
effective length of database: 123,038,227
effective search space: 99414887416
effective search space used: 99414887416
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 66 (30.0 bits)