Query 002335
Match_columns 935
No_of_seqs 595 out of 2464
Neff 6.8
Searched_HMMs 46136
Date Thu Mar 28 21:43:53 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002335.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/002335hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2253 U1 snRNP complex, subu 100.0 1.1E-65 2.3E-70 581.4 31.3 611 216-930 38-668 (668)
2 PF01480 PWI: PWI domain; Int 99.8 3.7E-19 8.1E-24 157.1 5.4 68 857-924 2-74 (77)
3 smart00311 PWI PWI, domain in 99.7 5.3E-18 1.1E-22 148.5 8.2 71 853-923 3-73 (74)
4 KOG2146 Splicing coactivator S 99.7 4.9E-18 1.1E-22 176.3 3.0 90 837-930 27-119 (354)
5 KOG4661 Hsp27-ERE-TATA-binding 99.7 2.2E-15 4.7E-20 168.1 20.8 82 216-297 403-484 (940)
6 PLN03134 glycine-rich RNA-bind 99.5 3.4E-14 7.4E-19 140.7 10.2 82 216-297 32-113 (144)
7 KOG0121 Nuclear cap-binding pr 99.5 6.4E-14 1.4E-18 130.8 6.9 82 216-297 34-115 (153)
8 KOG0415 Predicted peptidyl pro 99.5 1.5E-13 3.2E-18 146.9 10.2 86 215-300 236-321 (479)
9 TIGR01661 ELAV_HUD_SF ELAV/HuD 99.4 4.8E-13 1E-17 151.4 13.2 83 216-298 267-349 (352)
10 TIGR01659 sex-lethal sex-letha 99.4 8.2E-12 1.8E-16 140.7 18.5 83 215-297 104-186 (346)
11 KOG0127 Nucleolar protein fibr 99.4 1.2E-12 2.6E-17 146.9 9.6 87 216-303 115-201 (678)
12 PF00076 RRM_1: RNA recognitio 99.4 1.7E-12 3.7E-17 111.1 8.3 70 221-291 1-70 (70)
13 KOG0113 U1 small nuclear ribon 99.4 2E-12 4.3E-17 136.4 10.1 93 215-309 98-190 (335)
14 TIGR01661 ELAV_HUD_SF ELAV/HuD 99.4 1.6E-12 3.6E-17 147.1 10.0 81 217-297 2-82 (352)
15 KOG0149 Predicted RNA-binding 99.3 1.2E-12 2.5E-17 134.6 6.1 82 215-297 9-90 (247)
16 KOG0122 Translation initiation 99.3 1.3E-11 2.9E-16 127.2 11.9 82 216-297 187-268 (270)
17 PLN03213 repressor of silencin 99.3 8E-12 1.7E-16 138.4 10.8 90 216-311 8-99 (759)
18 KOG0125 Ataxin 2-binding prote 99.3 7.3E-12 1.6E-16 133.6 9.8 81 216-298 94-174 (376)
19 KOG0146 RNA-binding protein ET 99.3 4.8E-12 1E-16 131.1 7.8 84 212-295 279-362 (371)
20 TIGR01645 half-pint poly-U bin 99.3 9.4E-12 2E-16 147.5 10.4 82 216-297 202-283 (612)
21 TIGR01645 half-pint poly-U bin 99.3 9.6E-12 2.1E-16 147.4 9.0 80 216-295 105-184 (612)
22 KOG0126 Predicted RNA-binding 99.3 5.8E-13 1.3E-17 131.3 -1.1 81 216-296 33-113 (219)
23 PLN03120 nucleic acid binding 99.2 2.3E-11 4.9E-16 129.3 9.6 76 218-297 4-79 (260)
24 PF14259 RRM_6: RNA recognitio 99.2 3.5E-11 7.7E-16 103.8 7.9 70 221-291 1-70 (70)
25 TIGR01659 sex-lethal sex-letha 99.2 3.2E-11 6.9E-16 135.9 9.7 82 217-298 192-275 (346)
26 KOG0148 Apoptosis-promoting RN 99.2 2.3E-11 5E-16 126.8 7.4 82 218-299 62-143 (321)
27 KOG0108 mRNA cleavage and poly 99.2 2.9E-11 6.3E-16 138.2 8.7 81 219-299 19-99 (435)
28 TIGR01642 U2AF_lg U2 snRNP aux 99.2 7E-11 1.5E-15 140.6 11.4 82 216-297 293-374 (509)
29 KOG0145 RNA-binding protein EL 99.2 7.5E-11 1.6E-15 122.0 9.9 80 218-297 278-357 (360)
30 KOG0107 Alternative splicing f 99.2 3.9E-11 8.4E-16 118.3 7.2 75 218-297 10-84 (195)
31 KOG4207 Predicted splicing fac 99.2 3.9E-11 8.4E-16 120.7 7.0 81 217-297 12-92 (256)
32 TIGR01622 SF-CC1 splicing fact 99.2 8.6E-11 1.9E-15 138.0 10.2 80 218-297 186-265 (457)
33 smart00362 RRM_2 RNA recogniti 99.1 2.1E-10 4.5E-15 97.2 9.3 72 220-293 1-72 (72)
34 TIGR01628 PABP-1234 polyadenyl 99.1 1.6E-10 3.4E-15 139.5 11.4 88 216-304 283-370 (562)
35 TIGR01628 PABP-1234 polyadenyl 99.1 1.6E-10 3.4E-15 139.4 10.0 78 220-297 2-79 (562)
36 PLN03121 nucleic acid binding 99.1 2.1E-10 4.6E-15 120.2 9.3 76 217-296 4-79 (243)
37 KOG0145 RNA-binding protein EL 99.1 1.6E-10 3.5E-15 119.6 7.8 89 215-303 38-126 (360)
38 smart00360 RRM RNA recognition 99.1 4.3E-10 9.2E-15 94.8 8.7 70 223-292 1-70 (71)
39 KOG0114 Predicted RNA-binding 99.1 6.9E-10 1.5E-14 100.5 10.2 82 218-302 18-99 (124)
40 KOG0117 Heterogeneous nuclear 99.1 2.9E-10 6.3E-15 125.7 9.3 84 216-299 81-165 (506)
41 COG0724 RNA-binding proteins ( 99.1 3.2E-10 7E-15 120.9 9.5 80 218-297 115-194 (306)
42 TIGR01648 hnRNP-R-Q heterogene 99.1 2E-10 4.3E-15 136.2 8.6 79 217-296 57-136 (578)
43 TIGR01622 SF-CC1 splicing fact 99.1 3.8E-10 8.3E-15 132.6 10.4 82 215-297 86-167 (457)
44 KOG0131 Splicing factor 3b, su 99.1 1.4E-10 3.1E-15 114.9 5.6 81 216-296 7-87 (203)
45 KOG0111 Cyclophilin-type pepti 99.1 8.1E-11 1.7E-15 119.2 3.4 84 216-299 8-91 (298)
46 KOG0148 Apoptosis-promoting RN 99.0 5E-10 1.1E-14 117.0 8.4 79 214-298 160-238 (321)
47 KOG0130 RNA-binding protein RB 99.0 5.3E-10 1.1E-14 105.6 6.4 82 216-297 70-151 (170)
48 TIGR01649 hnRNP-L_PTB hnRNP-L/ 99.0 5.1E-09 1.1E-13 123.9 15.0 78 215-297 272-350 (481)
49 cd00590 RRM RRM (RNA recogniti 99.0 3.2E-09 6.9E-14 90.3 9.6 74 220-294 1-74 (74)
50 KOG0124 Polypyrimidine tract-b 99.0 4.2E-10 9.1E-15 121.0 4.2 81 218-298 113-193 (544)
51 KOG0144 RNA-binding protein CU 98.9 6.4E-10 1.4E-14 122.5 5.5 81 218-299 124-207 (510)
52 KOG0127 Nucleolar protein fibr 98.9 3.5E-09 7.6E-14 119.5 10.2 88 216-303 290-383 (678)
53 KOG0144 RNA-binding protein CU 98.9 4.4E-09 9.4E-14 116.1 10.2 88 215-302 31-121 (510)
54 TIGR01649 hnRNP-L_PTB hnRNP-L/ 98.9 3.5E-09 7.7E-14 125.3 9.7 76 217-298 1-78 (481)
55 TIGR01648 hnRNP-R-Q heterogene 98.9 3.6E-09 7.9E-14 125.6 9.4 73 218-298 233-307 (578)
56 KOG0226 RNA-binding proteins [ 98.9 4.9E-08 1.1E-12 101.6 15.4 84 213-296 185-268 (290)
57 smart00361 RRM_1 RNA recogniti 98.9 7.9E-09 1.7E-13 89.7 8.2 61 232-292 2-69 (70)
58 KOG0105 Alternative splicing f 98.9 3.1E-09 6.7E-14 105.4 6.1 80 216-298 4-83 (241)
59 PF13893 RRM_5: RNA recognitio 98.8 1.2E-08 2.6E-13 84.3 8.2 56 235-295 1-56 (56)
60 KOG0147 Transcriptional coacti 98.8 4E-09 8.6E-14 120.0 6.4 80 218-297 278-357 (549)
61 KOG0109 RNA-binding protein LA 98.8 4.3E-09 9.4E-14 111.1 5.8 72 219-298 3-74 (346)
62 KOG4208 Nucleolar RNA-binding 98.8 1.1E-08 2.4E-13 103.9 7.6 84 215-298 46-130 (214)
63 KOG0124 Polypyrimidine tract-b 98.8 8E-09 1.7E-13 111.4 6.2 97 201-297 186-289 (544)
64 TIGR01642 U2AF_lg U2 snRNP aux 98.8 1.6E-08 3.4E-13 120.5 8.9 79 215-294 172-256 (509)
65 KOG0131 Splicing factor 3b, su 98.7 1.4E-08 2.9E-13 101.1 6.5 81 217-297 95-176 (203)
66 KOG0117 Heterogeneous nuclear 98.7 1.6E-08 3.6E-13 112.1 7.0 73 218-298 259-331 (506)
67 KOG1924 RhoA GTPase effector D 98.6 3.3E-07 7.2E-12 107.3 15.0 17 209-225 632-648 (1102)
68 KOG0109 RNA-binding protein LA 98.6 3.7E-08 8E-13 104.2 5.4 76 215-298 75-150 (346)
69 KOG4206 Spliceosomal protein s 98.6 8.4E-08 1.8E-12 99.1 6.9 84 218-304 9-96 (221)
70 KOG0123 Polyadenylate-binding 98.6 1E-07 2.2E-12 108.4 8.4 75 221-298 79-153 (369)
71 KOG0132 RNA polymerase II C-te 98.5 1.1E-07 2.3E-12 111.7 7.0 76 218-299 421-496 (894)
72 KOG4212 RNA-binding protein hn 98.5 1.8E-07 4E-12 103.2 7.9 80 217-297 43-123 (608)
73 KOG0146 RNA-binding protein ET 98.5 2.7E-07 6E-12 96.3 8.3 84 217-301 18-104 (371)
74 KOG0153 Predicted RNA-binding 98.4 3.7E-07 8.1E-12 99.0 7.4 79 213-297 223-302 (377)
75 KOG1924 RhoA GTPase effector D 98.4 1.3E-06 2.9E-11 102.4 11.8 17 290-306 723-739 (1102)
76 KOG4205 RNA-binding protein mu 98.4 1.4E-07 3.1E-12 104.0 3.6 82 217-299 5-86 (311)
77 KOG0110 RNA-binding protein (R 98.4 4.8E-07 1E-11 105.9 8.1 78 218-296 515-596 (725)
78 KOG0110 RNA-binding protein (R 98.4 2.7E-07 5.8E-12 108.0 5.2 90 217-307 612-701 (725)
79 KOG1457 RNA binding protein (c 98.4 2.2E-06 4.8E-11 87.8 11.2 83 216-298 32-118 (284)
80 KOG4849 mRNA cleavage factor I 98.3 5.8E-05 1.3E-09 81.8 21.3 74 223-307 350-423 (498)
81 KOG2416 Acinus (induces apopto 98.3 2.1E-06 4.6E-11 98.4 10.6 79 214-298 440-522 (718)
82 KOG0123 Polyadenylate-binding 98.3 9.5E-07 2.1E-11 100.6 7.5 77 219-301 2-78 (369)
83 KOG1548 Transcription elongati 98.3 1.7E-06 3.7E-11 93.9 7.7 80 216-296 132-219 (382)
84 KOG4212 RNA-binding protein hn 98.3 1.5E-06 3.3E-11 96.2 6.9 77 214-295 532-608 (608)
85 KOG0116 RasGAP SH3 binding pro 98.2 1.7E-06 3.6E-11 99.1 7.1 75 218-293 288-362 (419)
86 KOG0151 Predicted splicing reg 98.2 2.4E-06 5.3E-11 99.5 8.3 84 214-297 170-256 (877)
87 KOG4454 RNA binding protein (R 98.2 6.2E-07 1.3E-11 91.6 3.0 80 217-298 8-87 (267)
88 KOG0533 RRM motif-containing p 98.1 6.2E-06 1.4E-10 87.9 8.5 81 216-297 81-161 (243)
89 KOG4209 Splicing factor RNPS1, 98.1 2.5E-06 5.4E-11 91.0 5.4 80 215-295 98-177 (231)
90 KOG4205 RNA-binding protein mu 98.1 3.3E-06 7.1E-11 93.4 4.8 81 217-298 96-176 (311)
91 KOG0106 Alternative splicing f 98.0 4.6E-06 9.9E-11 87.1 4.3 72 219-298 2-73 (216)
92 KOG0120 Splicing factor U2AF, 98.0 6.9E-06 1.5E-10 95.2 5.8 87 215-301 286-372 (500)
93 KOG4660 Protein Mei2, essentia 97.8 2.3E-05 5E-10 90.2 5.3 72 215-291 72-143 (549)
94 PF04059 RRM_2: RNA recognitio 97.5 0.0004 8.6E-09 64.1 8.5 77 219-295 2-84 (97)
95 KOG2253 U1 snRNP complex, subu 97.5 0.0027 5.8E-08 75.0 16.9 34 693-727 514-547 (668)
96 KOG0147 Transcriptional coacti 97.5 7E-05 1.5E-09 86.1 3.9 84 214-298 175-258 (549)
97 KOG1190 Polypyrimidine tract-b 97.4 0.00052 1.1E-08 76.3 9.6 76 218-298 297-373 (492)
98 KOG1457 RNA binding protein (c 97.4 0.00019 4.2E-09 73.9 4.6 65 217-285 209-273 (284)
99 KOG3671 Actin regulatory prote 97.3 0.018 3.8E-07 66.1 19.8 30 219-248 482-511 (569)
100 KOG4849 mRNA cleavage factor I 97.3 0.00055 1.2E-08 74.4 7.0 78 215-292 77-156 (498)
101 KOG4676 Splicing factor, argin 97.2 9.3E-05 2E-09 81.6 0.3 64 218-286 151-214 (479)
102 KOG1995 Conserved Zn-finger pr 97.2 0.00034 7.5E-09 77.1 4.2 83 216-298 64-154 (351)
103 KOG4307 RNA binding protein RB 97.0 0.065 1.4E-06 63.6 21.0 78 216-294 432-510 (944)
104 KOG1456 Heterogeneous nuclear 97.0 0.013 2.9E-07 64.7 14.4 76 216-296 285-361 (494)
105 KOG3152 TBP-binding protein, a 97.0 0.0004 8.6E-09 73.2 2.6 87 217-303 73-172 (278)
106 PF08777 RRM_3: RNA binding mo 97.0 0.0021 4.6E-08 60.4 7.0 85 219-309 2-93 (105)
107 PF11608 Limkain-b1: Limkain b 96.9 0.0026 5.7E-08 56.5 6.9 70 219-298 3-77 (90)
108 KOG2314 Translation initiation 96.9 0.0025 5.5E-08 73.5 8.0 77 217-294 57-140 (698)
109 KOG4210 Nuclear localization s 96.8 0.00065 1.4E-08 75.0 2.2 80 218-298 184-264 (285)
110 KOG1029 Endocytic adaptor prot 96.7 0.034 7.3E-07 66.5 15.9 19 376-394 248-268 (1118)
111 KOG4206 Spliceosomal protein s 96.7 0.0039 8.5E-08 65.1 7.1 77 215-296 143-220 (221)
112 COG5175 MOT2 Transcriptional r 96.7 0.003 6.4E-08 68.7 6.2 87 218-306 114-209 (480)
113 KOG4307 RNA binding protein RB 96.6 0.2 4.4E-06 59.7 20.6 77 218-294 867-943 (944)
114 KOG1855 Predicted RNA-binding 96.5 0.0017 3.8E-08 72.8 3.6 76 209-284 222-310 (484)
115 KOG4211 Splicing factor hnRNP- 96.5 0.0044 9.5E-08 70.9 6.7 73 218-294 10-82 (510)
116 KOG0307 Vesicle coat complex C 96.5 0.42 9E-06 60.1 23.9 12 271-282 975-986 (1049)
117 KOG0106 Alternative splicing f 96.5 0.0024 5.2E-08 67.1 4.3 69 216-292 97-165 (216)
118 KOG0307 Vesicle coat complex C 96.2 0.64 1.4E-05 58.5 23.4 9 235-243 955-963 (1049)
119 KOG0129 Predicted RNA-binding 96.2 0.01 2.2E-07 68.4 7.4 64 216-279 368-432 (520)
120 KOG2891 Surface glycoprotein [ 95.7 1.2 2.7E-05 47.7 19.6 80 218-297 149-267 (445)
121 PF08952 DUF1866: Domain of un 95.5 0.048 1E-06 53.9 7.5 71 215-294 24-103 (146)
122 KOG1984 Vesicle coat complex C 95.4 1.7 3.6E-05 53.7 21.7 7 878-884 991-997 (1007)
123 KOG0120 Splicing factor U2AF, 95.3 0.039 8.5E-07 64.7 7.3 63 235-297 426-491 (500)
124 KOG1548 Transcription elongati 95.2 0.049 1.1E-06 60.1 7.3 78 217-298 264-352 (382)
125 KOG1190 Polypyrimidine tract-b 95.2 0.032 7E-07 62.5 6.0 79 216-298 412-491 (492)
126 PTZ00266 NIMA-related protein 95.2 0.082 1.8E-06 67.5 10.3 22 833-854 874-895 (1021)
127 KOG0128 RNA-binding protein SA 94.9 0.01 2.2E-07 71.9 1.2 79 218-297 736-814 (881)
128 KOG4211 Splicing factor hnRNP- 94.6 0.065 1.4E-06 61.7 6.6 74 218-293 103-177 (510)
129 KOG0128 RNA-binding protein SA 94.3 0.0072 1.6E-07 73.1 -1.9 76 217-292 666-741 (881)
130 KOG4676 Splicing factor, argin 94.2 0.074 1.6E-06 59.4 5.9 82 219-300 8-92 (479)
131 PHA03378 EBNA-3B; Provisional 94.0 1.4 3E-05 52.7 15.7 7 239-245 883-889 (991)
132 KOG1996 mRNA splicing factor [ 94.0 0.13 2.7E-06 55.7 6.7 64 233-296 301-365 (378)
133 KOG0112 Large RNA-binding prot 93.9 0.051 1.1E-06 66.4 4.2 83 215-303 452-536 (975)
134 KOG0129 Predicted RNA-binding 93.9 0.12 2.6E-06 60.0 6.8 78 216-296 257-339 (520)
135 PF05172 Nup35_RRM: Nup53/35/4 93.6 0.13 2.9E-06 47.9 5.4 77 219-297 7-91 (100)
136 KOG0105 Alternative splicing f 93.4 0.29 6.4E-06 49.7 7.9 70 216-292 113-184 (241)
137 KOG0115 RNA-binding protein p5 93.4 0.07 1.5E-06 56.8 3.7 63 219-282 32-94 (275)
138 KOG1984 Vesicle coat complex C 93.1 12 0.00027 46.6 22.0 8 230-237 299-306 (1007)
139 KOG2193 IGF-II mRNA-binding pr 92.9 0.17 3.6E-06 57.1 5.7 77 219-302 2-80 (584)
140 PF14605 Nup35_RRM_2: Nup53/35 92.8 0.18 3.8E-06 41.5 4.5 52 219-277 2-53 (53)
141 KOG0112 Large RNA-binding prot 92.5 0.037 8E-07 67.5 0.1 80 216-296 370-449 (975)
142 KOG2068 MOT2 transcription fac 91.8 0.07 1.5E-06 59.0 1.2 77 219-296 78-161 (327)
143 KOG1456 Heterogeneous nuclear 91.7 0.15 3.4E-06 56.6 3.7 71 223-298 127-199 (494)
144 KOG4364 Chromatin assembly fac 91.6 5.3 0.00012 48.0 16.0 9 580-588 350-358 (811)
145 KOG1365 RNA-binding protein Fu 89.7 0.71 1.5E-05 51.8 6.5 76 216-292 278-356 (508)
146 KOG1923 Rac1 GTPase effector F 88.7 1.7 3.7E-05 53.0 9.1 8 234-241 405-412 (830)
147 KOG2202 U2 snRNP splicing fact 88.6 0.31 6.7E-06 52.2 2.7 62 235-297 85-147 (260)
148 PF11600 CAF-1_p150: Chromatin 86.2 27 0.00059 37.2 15.8 7 595-601 166-172 (216)
149 PF15023 DUF4523: Protein of u 85.5 3 6.5E-05 41.1 7.2 74 215-296 83-160 (166)
150 PF10309 DUF2414: Protein of u 85.1 3.3 7.1E-05 35.3 6.4 55 218-280 5-62 (62)
151 KOG4210 Nuclear localization s 85.0 0.56 1.2E-05 52.1 2.4 82 217-298 87-168 (285)
152 KOG1365 RNA-binding protein Fu 84.5 1.6 3.4E-05 49.1 5.5 80 218-311 161-244 (508)
153 TIGR03687 pupylate_cterm ubiqu 83.9 1.6 3.4E-05 31.9 3.3 24 891-914 4-27 (33)
154 KOG2888 Putative RNA binding p 83.4 0.72 1.6E-05 50.7 2.3 19 289-307 162-180 (453)
155 KOG2135 Proteins containing th 82.6 0.86 1.9E-05 52.5 2.6 76 216-298 370-446 (526)
156 PF04847 Calcipressin: Calcipr 82.4 2.9 6.3E-05 43.4 6.2 61 232-298 9-71 (184)
157 KOG4660 Protein Mei2, essentia 81.4 3.3 7.2E-05 48.9 6.8 89 218-306 361-483 (549)
158 KOG2318 Uncharacterized conser 80.9 4.2 9.1E-05 48.2 7.4 79 215-293 171-301 (650)
159 KOG4574 RNA-binding protein (c 80.7 5.4 0.00012 49.2 8.4 74 218-297 298-373 (1007)
160 PF11517 Nab2: Nuclear abundan 80.2 8.8 0.00019 35.4 7.6 74 855-928 8-83 (107)
161 KOG2891 Surface glycoprotein [ 80.0 59 0.0013 35.4 14.9 25 261-285 76-104 (445)
162 KOG1985 Vesicle coat complex C 79.1 45 0.00098 41.7 15.4 9 510-518 529-537 (887)
163 PF08675 RNA_bind: RNA binding 78.9 4.2 9E-05 36.7 5.1 54 219-281 10-63 (87)
164 KOG4285 Mitotic phosphoprotein 77.0 8 0.00017 42.6 7.5 57 225-289 204-260 (350)
165 PF03880 DbpA: DbpA RNA bindin 74.0 9 0.00019 33.6 5.9 58 229-295 12-74 (74)
166 PF03467 Smg4_UPF3: Smg-4/UPF3 71.9 3.2 6.9E-05 42.9 3.0 81 217-297 6-97 (176)
167 KOG0226 RNA-binding proteins [ 70.1 13 0.00029 40.0 7.0 71 220-291 98-171 (290)
168 KOG3702 Nuclear polyadenylated 69.4 5.3 0.00012 48.2 4.4 64 856-919 21-84 (681)
169 KOG2591 c-Mpl binding protein, 69.3 4.6 9.9E-05 47.6 3.8 70 216-292 173-246 (684)
170 PRK14950 DNA polymerase III su 69.0 25 0.00054 43.2 10.3 11 234-244 524-535 (585)
171 KOG2888 Putative RNA binding p 65.0 0.96 2.1E-05 49.8 -2.5 16 234-249 85-100 (453)
172 PRK14950 DNA polymerase III su 65.0 28 0.0006 42.8 9.6 6 288-293 535-540 (585)
173 PF07576 BRAP2: BRCA1-associat 64.3 34 0.00073 32.6 7.9 68 218-287 13-81 (110)
174 PF11767 SET_assoc: Histone ly 62.8 24 0.00052 30.5 6.0 55 229-292 11-65 (66)
175 KOG4246 Predicted DNA-binding 61.0 2.3 5E-05 52.0 -0.6 9 218-226 145-153 (1194)
176 KOG4246 Predicted DNA-binding 59.7 3.5 7.7E-05 50.5 0.6 20 261-281 159-178 (1194)
177 PF07174 FAP: Fibronectin-atta 56.0 56 0.0012 35.7 8.6 10 219-228 162-171 (297)
178 PF05639 Pup: Pup-like protein 55.4 3.3 7.2E-05 35.8 -0.4 25 890-914 39-63 (69)
179 KOG0804 Cytoplasmic Zn-finger 54.3 34 0.00074 39.8 7.1 68 218-287 74-142 (493)
180 PRK15319 AIDA autotransporter- 53.2 22 0.00047 48.1 6.0 13 281-294 1858-1870(2039)
181 KOG4454 RNA binding protein (R 52.0 4.5 9.8E-05 42.6 -0.2 77 215-292 77-157 (267)
182 KOG3938 RGS-GAIP interacting p 50.9 18 0.00039 39.3 4.0 60 859-919 261-323 (334)
183 PF07174 FAP: Fibronectin-atta 48.8 87 0.0019 34.4 8.7 25 218-242 170-199 (297)
184 KOG2135 Proteins containing th 48.1 20 0.00043 41.9 4.0 63 857-919 7-73 (526)
185 cd07354 HN_L-delphilin-R1_like 48.1 35 0.00076 30.5 4.7 55 864-919 9-66 (80)
186 KOG0163 Myosin class VI heavy 47.1 4.3E+02 0.0094 33.2 14.8 25 861-885 1179-1212(1259)
187 KOG2295 C2H2 Zn-finger protein 47.0 4.4 9.6E-05 47.8 -1.2 72 217-288 230-301 (648)
188 KOG3054 Uncharacterized conser 46.5 76 0.0016 34.2 7.7 8 725-732 258-265 (299)
189 PF03276 Gag_spuma: Spumavirus 43.6 1.1E+02 0.0025 36.6 9.3 9 270-278 360-368 (582)
190 PRK12323 DNA polymerase III su 43.4 7.8E+02 0.017 31.0 20.4 10 241-250 636-645 (700)
191 KOG2689 Predicted ubiquitin re 40.3 2.1E+02 0.0045 31.6 10.0 29 569-597 133-161 (290)
192 KOG2193 IGF-II mRNA-binding pr 38.8 3.2 6.9E-05 47.3 -3.9 76 217-295 79-154 (584)
193 PF13797 Post_transc_reg: Post 38.0 77 0.0017 28.9 5.5 58 855-912 5-67 (87)
194 PF09932 DUF2164: Uncharacteri 33.6 94 0.002 27.7 5.2 64 852-916 8-72 (76)
195 PF08926 DUF1908: Domain of un 33.2 90 0.0019 34.3 6.0 28 893-920 190-224 (282)
196 KOG4410 5-formyltetrahydrofola 33.1 98 0.0021 34.0 6.2 49 218-271 330-378 (396)
197 KOG0670 U4/U6-associated splic 32.5 10 0.00022 45.0 -1.3 33 820-852 476-514 (752)
198 TIGR01795 CM_mono_cladeE monof 32.4 1.2E+02 0.0027 27.9 6.0 39 893-931 51-91 (94)
199 PRK15313 autotransport protein 32.0 1.2E+02 0.0025 39.0 7.5 15 281-296 770-784 (955)
200 KOG2072 Translation initiation 31.6 4.3E+02 0.0094 33.6 11.8 90 505-605 765-854 (988)
201 KOG4019 Calcineurin-mediated s 31.5 56 0.0012 33.8 3.8 76 217-298 9-90 (193)
202 PRK06285 chorismate mutase; Pr 31.3 2.1E+02 0.0044 26.5 7.4 24 908-931 72-95 (96)
203 KOG0334 RNA helicase [RNA proc 30.7 43 0.00093 43.0 3.5 9 718-726 310-318 (997)
204 PF09707 Cas_Cas2CT1978: CRISP 30.3 75 0.0016 29.0 4.1 49 218-269 25-73 (86)
205 KOG3054 Uncharacterized conser 30.2 1.6E+02 0.0034 31.9 7.0 7 716-722 211-217 (299)
206 PF02607 B12-binding_2: B12 bi 30.1 1.4E+02 0.003 25.9 5.8 51 861-916 3-54 (79)
207 cd07347 harmonin_N_like N-term 29.6 1.6E+02 0.0035 26.4 6.0 60 860-919 5-64 (78)
208 PF10654 DUF2481: Protein of u 28.1 85 0.0018 30.0 4.1 43 877-919 14-56 (126)
209 KOG4840 Predicted hydrolases o 27.7 1E+02 0.0022 33.2 5.0 86 218-303 37-123 (299)
210 KOG2689 Predicted ubiquitin re 26.8 4.8E+02 0.01 28.9 10.0 15 580-594 157-171 (290)
211 PF15473 PCNP: PEST, proteolyt 26.1 24 0.00052 35.1 0.2 19 693-711 87-105 (150)
212 PF09770 PAT1: Topoisomerase I 24.8 24 0.00053 45.1 0.0 13 875-887 762-774 (808)
213 KOG4483 Uncharacterized conser 24.7 1.6E+02 0.0034 34.0 6.2 56 217-279 390-446 (528)
214 KOG4008 rRNA processing protei 24.6 2.1E+02 0.0045 31.0 6.7 34 215-248 37-70 (261)
215 KOG4368 Predicted RNA binding 23.5 1.2E+03 0.025 28.7 13.0 10 377-386 553-562 (757)
216 COG4342 Uncharacterized protei 23.3 1.8E+02 0.004 31.7 6.1 46 857-905 228-273 (291)
217 PRK09239 chorismate mutase; Pr 23.0 3.6E+02 0.0077 25.4 7.4 24 907-930 74-97 (104)
218 COG0724 RNA-binding proteins ( 22.9 87 0.0019 32.7 3.8 65 215-279 222-286 (306)
219 TIGR01797 CM_P_1 chorismate mu 22.9 3.7E+02 0.0081 24.0 7.3 63 863-925 11-81 (83)
220 PF04652 DUF605: Vta1 like; I 22.3 29 0.00063 40.0 0.0 8 266-273 361-368 (380)
221 PRK11558 putative ssRNA endonu 21.6 1.2E+02 0.0026 28.3 3.8 50 218-270 27-76 (97)
222 PRK12270 kgd alpha-ketoglutara 20.6 3.2E+02 0.0069 35.7 8.2 18 826-843 1152-1169(1228)
No 1
>KOG2253 consensus U1 snRNP complex, subunit SNU71 and related PWI-motif proteins [RNA processing and modification]
Probab=100.00 E-value=1.1e-65 Score=581.35 Aligned_cols=611 Identities=32% Similarity=0.483 Sum_probs=363.4
Q ss_pred CCCcceeeccCCCCCCHHHHHHHHHhcCCcceeeeeccCCCCCCCceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEee
Q 002335 216 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVD 295 (935)
Q Consensus 216 ~~~~tlfVgnLp~~vte~~L~~lFs~~G~V~~vki~~d~~tgk~kgfgFVeF~~~e~A~~Al~~Lng~~i~gr~L~V~~a 295 (935)
++..++|||||.+.|....++.|+..||.|.+|+++. ||||.|.......+|+..|+-..++|..|.++++
T Consensus 38 ~~~~~vfv~~~~~~~s~~~~~~il~~~g~v~s~kr~~---------fgf~~f~~~~~~~ra~r~~t~~~~~~~kl~~~~d 108 (668)
T KOG2253|consen 38 PPRDTVFVGNISYLVSQEFWKSILAKSGFVPSWKRDK---------FGFCEFLKHIGDLRASRLLTELNIDDQKLIENVD 108 (668)
T ss_pred CCCceeEecchhhhhhHHHHHHHHhhCCcchhhhhhh---------hcccchhhHHHHHHHHHHhcccCCCcchhhccch
Confidence 3467899999999999999999999999999998764 9999999999999999999999999999999887
Q ss_pred chhHHHHHHHHHHhhHhhhhhhhhhcccCCCCcccccccccCCCCCCCc---------ccccCCCCCCCCCCCCCCCccc
Q 002335 296 QATREYLERYVDKKTENTKKLKETQDAGAGKEDESVQSVEKNEPTKSPE---------NLKDNETGNKESHDPTNFGVVT 366 (935)
Q Consensus 296 ~~~~~~l~~~k~kk~e~~k~~~e~k~e~~~~~~~~~~~~~~~~~~~~~~---------~~~~~d~~~~e~~~~~~~~~~~ 366 (935)
..+-.. .++++... ......|.+..+ ....++....+...+.....+.
T Consensus 109 ~q~~~n-----------~~k~~~~~------------~~~~~~f~p~~srr~e~i~~k~~~l~~~~~~~~~~is~s~~s~ 165 (668)
T KOG2253|consen 109 EQTIEN-----------ADKEKSIA------------NKESHKFVPSSSRRQESIQNKPLSLDEQIHKKSLQISSSAASR 165 (668)
T ss_pred hhhhcC-----------ccccccch------------hhhhcccCCchhHHHHHhhccccchhHHHHHHHHhccchhhhh
Confidence 332111 11110000 001111111100 0000000011111222222222
Q ss_pred hhhhhhhHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCCCCccccCCCCccccccccccccccccccccccccC
Q 002335 367 EEDRKADQEALEKLTCMVEERLKTNPLPPPPPQTTADGSGISNSELPAKARDGDSDVDMIRNDIAEDKLDDETTSDTKAS 446 (935)
Q Consensus 367 ~ede~~D~~~~e~i~~~iee~~~~r~~~~p~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 446 (935)
.....+|...++.+.+.+++ +.+.+....+..+ ..+.....+.+.+..+ + |..++.+
T Consensus 166 ~~~~e~d~h~~e~~~~~~~s----~~~~~~~~~~~~~-----~~e~~~~s~~~~s~td-----s-------~~~~d~~-- 222 (668)
T KOG2253|consen 166 RQIAEADDHCLELEKTETES----NSALSKEAESKKS-----PFEDTKDSKRSFSSTD-----S-------GSESDSA-- 222 (668)
T ss_pred hhhHHHHHHHHHHHHhhccc----ccccCcccccccC-----chhhhchhhhhhcccC-----c-------cccchhh--
Confidence 23334444444444444443 2222211111110 0000000110110000 0 0000000
Q ss_pred CCCCCCCCCCCCcccccccCcchhhhhHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Q 002335 447 DHDRPETSSPDRSRVHDRRGRDKERDLKREKEREIDRYEREAERERVRKEREQRRKIEEAEREYERCLKDWEYREREREK 526 (935)
Q Consensus 447 ~~dr~~~~~~dR~r~~dRr~r~r~r~r~r~~~re~~r~~r~~erer~r~~r~~~~~~~e~e~~~~~r~r~~e~rer~r~~ 526 (935)
... +++.++ .+| +.+.+.|.|...|.+++.+.....+..+.+|..+++.+++|++|+.|++.|+.|||.+++
T Consensus 223 ~~~---s~~~n~--~rd---~sr~~~r~R~~~r~Re~~e~~ed~~~~re~r~~~~~~~~~E~Ayq~rl~~we~Rer~~~K 294 (668)
T KOG2253|consen 223 EVN---SSSLNY--CRD---RSRFDRRSRNDRRIRERLEKNEDSDEYREDRAATIKSVDPEKAYQTRLVFWEIREQTKEK 294 (668)
T ss_pred hhc---cccccc--chh---hccchhhhHHHHHHHHHhhhccchHHHHHhhhhhhhccChhHHHHHHHHHHHHHHHHHHH
Confidence 000 011111 111 111111222222222222222333566777889999999999999999999999999966
Q ss_pred HHHHHHHHHHHHH------HHHHHHhhhccchhhhhhHHhhhhhHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHH
Q 002335 527 ERQYEKEKEKERE------RKRKKEILYDEEEDEDDSRKRWRRSVLEEKRRKRIREKEEDLADEVREEEEIAVAKRRAEE 600 (935)
Q Consensus 527 ~re~ekerere~e------r~r~~e~~~~~d~e~~~~rk~~~~~~~~~R~r~r~re~~~d~~dr~~e~~E~~~~~~~~~e 600 (935)
.+++++.+++++. .+++++|++||||++++ .+||++++|.+|++++.+|+++|.+||.+|++|++++||+..+
T Consensus 295 e~eke~~ke~~r~~~~~ke~kr~k~~~ed~DD~rdd-~~y~r~s~l~~r~r~~~re~Ead~~dR~qeqee~~E~Kr~~~~ 373 (668)
T KOG2253|consen 295 EREKERLKEKSRQYKREKEAKRLKEFLEDYDDERDD-PKYYRGSALQERLRDREREAEADRRDRHQEQEELEEIKRRHSE 373 (668)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhhhhcchhhhh-HHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHhh
Confidence 6555555555443 35678999999999888 4999999999999999999999999999999999999999888
Q ss_pred HHHHHHHHHHHhhhhhhccCCCcc----chhhhhccCCcccccCCCCcccccCCCCCCCCCCCCCCCCCCCccccccccc
Q 002335 601 EQLQQQQRDALKLLSDNAVNGSLA----EESAVESKGMDVEHDYHDDSIRENHMAGDPSSQNGNGDESTNVPIAASDMRQ 676 (935)
Q Consensus 601 e~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~ 676 (935)
+..++....+.+.+.+........ +...++..+......+.+.+++..|... ...+..+ .....+-....
T Consensus 374 ~~~~~~~~e~~r~~~~~~~~~~~~~~~a~~ke~e~~~~~~~~q~~~e~a~~~~~~~--eee~~s~----r~~~~~d~~~~ 447 (668)
T KOG2253|consen 374 EEAEDPSAEEERNMEEEEALDEEEDDEAVRKEPEERDLEESHQRLGESANQEHSND--EEEIKSQ----RDDYKPDENDH 447 (668)
T ss_pred hcccccchHHHHHHhhhhhhcchhhHHHHhhCcccccCccccchHHhhhhhccccc--hhhcccc----hhhhhhhhhhh
Confidence 765444333333333332222111 1112222222222333333333333110 0000000 00000000112
Q ss_pred CCCCccccccCCccCCCCccccCccCCCCCCcchhcccCCCCcccCCCChHHHhhhcCCCCCCCCCchHHHHHHHHHhhc
Q 002335 677 SGNVPARKLGFGLVGSGKRTAVPSVFHVEDDDDADKDKKMRPLVPIDYSTEELQAAQPHVSGANPPNLAAAAEFAKRISN 756 (935)
Q Consensus 677 ~~~~~~~~~~~~~~~~~~~~~~~~vf~~~dd~~~~~~~~~r~lvp~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 756 (935)
-..+|...+.+++++++.+.....+|-.-+...+++..++..++||.|+.....+ .|...+.+..++. -+-.
T Consensus 448 i~~~ps~~~~s~~~~~n~~~~~~~~~~~~~e~~~~es~n~~~n~p~~~~~~~q~~-----~g~sa~~~~i~~k---k~~~ 519 (668)
T KOG2253|consen 448 ISHAPSASLASGLVDANDRDSSPRGFKERHEREDDESLNKKINRPILASIQNQDE-----IGPSASPIPIAKK---KLPE 519 (668)
T ss_pred hhcCchhhhhhhccCCCCCCcccccccccccCcchhhhccccccccccccccccc-----ccCCCCccccccc---cCCC
Confidence 3356677788899999988889888876554444556667789999987633222 1222211111110 0001
Q ss_pred ccchhhhchHHHHhhhhhccccchhhcccccccccchhh-hhhhhhcccccccccccccccCchhhhhhHHHHhhhcCCC
Q 002335 757 VNSKEEKSDAERERSRRLHDRSSQREKDRSDEDNNRTRD-EHKEKILDRDRDREHGLDKVKTPDNKKLLDAKQLIDMIPK 835 (935)
Q Consensus 757 ~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ip~ 835 (935)
++. .+.+ .++|.+-..+ ++.+..-++.+++.|++...- +|++ ++++||.+||+
T Consensus 520 ~~v--------------------~~~~--~d~Dk~v~~~kk~vp~dyd~n~~~~~~~~~nd--eK~~--~~ksLI~tIP~ 573 (668)
T KOG2253|consen 520 TGV--------------------FRED--DDEDKNVHEKKKLVPLDYDRNQARAHSGESND--EKRK--RIKSLIETIPT 573 (668)
T ss_pred ccc--------------------cccc--CCcccccchhhhcccccCChhhcccccCCcch--hHHH--HHHhhcccCCc
Confidence 100 0000 1122111122 222222233234434333221 2444 79999999999
Q ss_pred ChhhhhhhcccccccchhhHHhhhhhHHHHHHHhhcCcchhHHHHHHHHhhhccCCHHHHHHHHHHhhhHHHHHHHHHHH
Q 002335 836 TKEELFSYEINWAVYDKHELHERMRPWISKKITEFLGEEETTLVDYIVSSTQDHVKASQMLELLQTILDDEAEMFVLKMW 915 (935)
Q Consensus 836 ~k~~lf~~~i~w~~~~~~~~~~~~~pwi~kki~e~lG~ee~~lv~~i~~~l~~~~~~~~~~~~l~~~ld~~a~~fv~~lw 915 (935)
+|++||+|+|+|+.||..+|+++|+|||+|||+||||++|++||||||++|+.|..|+.||.+|.+|||++|++||+|||
T Consensus 574 ~keeLf~~pidw~~ld~~lm~~rirpwV~KKIiEflGeeE~tLVdFI~s~i~~h~~~q~iL~dl~~ilDEdAE~FV~KmW 653 (668)
T KOG2253|consen 574 EKEELFAYPIDWDELDSILMNERIRPWVNKKIIEFLGEEEDTLVDFICSNIRQHSSPQQILDDLAMILDEDAEVFVVKMW 653 (668)
T ss_pred chHHHhhCcccHHHHhhHHHHHHHHHHHHHHHHHHhCCcchhHHHHHHHHHHhcCCHHHHHHHHHHHHhcchHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhhccc
Q 002335 916 RMLIFEIKKVETGLA 930 (935)
Q Consensus 916 r~li~e~~~~~~g~~ 930 (935)
||||||+.+++.||.
T Consensus 654 RlLiyel~ar~~g~~ 668 (668)
T KOG2253|consen 654 RLLIYELGARKLGLT 668 (668)
T ss_pred HHHHHHhhhhhccCC
Confidence 999999999999985
No 2
>PF01480 PWI: PWI domain; InterPro: IPR002483 The PWI domain, named after a highly conserved PWI tri-peptide located within its N-terminal region, is a ~80 amino acid module, which is found either at the N terminus or at the C terminus of eukaryotic proteins involved in pre-mRNA processing []. It is generally found in association with other domains such as RRM and RS. The PWI domain is a RNA/DNA-binding domain that has an equal preference for single- and double-stranded nucleic acids and is likely to have multiple important functions in pre-mRNA processing []. Proteins containing this domain include the SR-related nuclear matrix protein of 160kDa (SRm160) splicing and 3'-end cleavage-stimulatory factor, and the mammalian splicing factor PRP3. The PWI domain is a soluble, globular and independently folded domain which consists of a four-helix bundle, with structured N- and C-terminal elements [].; GO: 0006397 mRNA processing; PDB: 1MP1_A 1X4Q_A.
Probab=99.76 E-value=3.7e-19 Score=157.05 Aligned_cols=68 Identities=46% Similarity=0.808 Sum_probs=61.4
Q ss_pred hhhhhHHHHHHHhhcCcchhHHHHHHHHhhhccC-----CHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHh
Q 002335 857 ERMRPWISKKITEFLGEEETTLVDYIVSSTQDHV-----KASQMLELLQTILDDEAEMFVLKMWRMLIFEIKK 924 (935)
Q Consensus 857 ~~~~pwi~kki~e~lG~ee~~lv~~i~~~l~~~~-----~~~~~~~~l~~~ld~~a~~fv~~lwr~li~e~~~ 924 (935)
++|||||.+||+||||++|++||+||+++|..+. +++.|+++|++||+++|..||.+||+||||++..
T Consensus 2 ~~lk~WI~~kl~e~lG~edd~lvdyI~~~l~~~~~~~~~~~~~l~~~L~~fL~~~a~~Fv~~Lw~~l~~~q~~ 74 (77)
T PF01480_consen 2 EKLKPWISKKLEEILGFEDDVLVDYIVALLKSHKSSNEPDPKELQEQLEDFLDEEAEEFVDELWRLLISAQSS 74 (77)
T ss_dssp HHHHHHHHHHHHHHHSS--CHHHHHHHHHCCTT--SSS--HHHHHHHHTTTTGHHCHHHHHHHHHHHHHHTTS
T ss_pred hHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhccccccccHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcC
Confidence 5799999999999999999999999999999887 9999999999999999999999999999988764
No 3
>smart00311 PWI PWI, domain in splicing factors.
Probab=99.73 E-value=5.3e-18 Score=148.55 Aligned_cols=71 Identities=42% Similarity=0.718 Sum_probs=68.0
Q ss_pred hhHHhhhhhHHHHHHHhhcCcchhHHHHHHHHhhhccCCHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH
Q 002335 853 HELHERMRPWISKKITEFLGEEETTLVDYIVSSTQDHVKASQMLELLQTILDDEAEMFVLKMWRMLIFEIK 923 (935)
Q Consensus 853 ~~~~~~~~pwi~kki~e~lG~ee~~lv~~i~~~l~~~~~~~~~~~~l~~~ld~~a~~fv~~lwr~li~e~~ 923 (935)
.+..++|||||++||++|||++|++||+||+++|++|.+|+.++.+|..+++.+|+.||.+||+||||++.
T Consensus 3 kv~~~~lk~WI~~kv~e~LG~~d~~vvd~i~~~l~~~~~~~~l~~~L~~~~f~da~~Fv~~Lw~~l~~~~~ 73 (74)
T smart00311 3 KLKLDEIKPWITKKVIEFLGFEEDTLVEFILSQIRQHKGPQAKLLQINLTGFEDAEEFVDKLWRLLIFELK 73 (74)
T ss_pred hhHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCChHHHHHHHHhhcchhHHHHHHHHHHHHHHhhc
Confidence 45678999999999999999999999999999999999999999999999999999999999999999975
No 4
>KOG2146 consensus Splicing coactivator SRm160/300, subunit SRm160 (contains PWI domain) [RNA processing and modification; General function prediction only]
Probab=99.70 E-value=4.9e-18 Score=176.26 Aligned_cols=90 Identities=21% Similarity=0.486 Sum_probs=77.1
Q ss_pred hhhhhhhcccccccchhhHHhhhhhHHHHHHHhhcCcchhHHHHHHHHhhhc--cCCHHHHHHHHHHhhh-HHHHHHHHH
Q 002335 837 KEELFSYEINWAVYDKHELHERMRPWISKKITEFLGEEETTLVDYIVSSTQD--HVKASQMLELLQTILD-DEAEMFVLK 913 (935)
Q Consensus 837 k~~lf~~~i~w~~~~~~~~~~~~~pwi~kki~e~lG~ee~~lv~~i~~~l~~--~~~~~~~~~~l~~~ld-~~a~~fv~~ 913 (935)
+.+-+...||+..| ..+.|||||+++|+|+||+||+|||+||+++|.+ ..+|+.|+++|+|||+ .+|..||.+
T Consensus 27 F~~~lekkVDmsKv----nleVlkPWItkrvneilgfEDdVViefvynqLee~k~ldpkkmQiNlTGFLngrnAreFmge 102 (354)
T KOG2146|consen 27 FPACLEKKVDMSKV----NLEVLKPWITKRVNEILGFEDDVVIEFVYNQLEEAKNLDPKKMQINLTGFLNGRNAREFMGE 102 (354)
T ss_pred cHHHHhhhcchhhc----chhhhhHHHHHHHHHhhccccchhHHHHHHHHhhhcCCCchheeeeeehhcccccHHHHHHH
Confidence 44566667777666 4566999999999999999999999999999986 6699999999999999 999999999
Q ss_pred HHHHHHHHHHhhhhccc
Q 002335 914 MWRMLIFEIKKVETGLA 930 (935)
Q Consensus 914 lwr~li~e~~~~~~g~~ 930 (935)
||-|||.+.-+.+.||.
T Consensus 103 LW~LliS~a~~s~~giP 119 (354)
T KOG2146|consen 103 LWSLLISEASQSQYGIP 119 (354)
T ss_pred HHHHHHhhccccccCCc
Confidence 99999986655555553
No 5
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=99.68 E-value=2.2e-15 Score=168.05 Aligned_cols=82 Identities=11% Similarity=0.251 Sum_probs=76.2
Q ss_pred CCCcceeeccCCCCCCHHHHHHHHHhcCCcceeeeeccCCCCCCCceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEee
Q 002335 216 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVD 295 (935)
Q Consensus 216 ~~~~tlfVgnLp~~vte~~L~~lFs~~G~V~~vki~~d~~tgk~kgfgFVeF~~~e~A~~Al~~Lng~~i~gr~L~V~~a 295 (935)
...++|||.+|+..+...+|+.||++||.|+..+||++..+...+|||||+|.+.++|.+||..|+-.+|+|+.|.|..+
T Consensus 403 ~~gRNlWVSGLSstTRAtDLKnlFSKyGKVvGAKVVTNaRsPGaRCYGfVTMSts~eAtkCI~hLHrTELHGrmISVEka 482 (940)
T KOG4661|consen 403 TLGRNLWVSGLSSTTRATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTSAEATKCIEHLHRTELHGRMISVEKA 482 (940)
T ss_pred ccccceeeeccccchhhhHHHHHHHHhcceeceeeeecCCCCCcceeEEEEecchHHHHHHHHHhhhhhhcceeeeeeec
Confidence 44789999999999989999999999999999999999888888999999999999999999999999999999999765
Q ss_pred ch
Q 002335 296 QA 297 (935)
Q Consensus 296 ~~ 297 (935)
..
T Consensus 483 KN 484 (940)
T KOG4661|consen 483 KN 484 (940)
T ss_pred cc
Confidence 44
No 6
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=99.52 E-value=3.4e-14 Score=140.74 Aligned_cols=82 Identities=18% Similarity=0.329 Sum_probs=78.3
Q ss_pred CCCcceeeccCCCCCCHHHHHHHHHhcCCcceeeeeccCCCCCCCceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEee
Q 002335 216 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVD 295 (935)
Q Consensus 216 ~~~~tlfVgnLp~~vte~~L~~lFs~~G~V~~vki~~d~~tgk~kgfgFVeF~~~e~A~~Al~~Lng~~i~gr~L~V~~a 295 (935)
...++|||+||++.+++++|+.+|..||.|.+|.|+.+..+|+++|||||+|.+.++|..||..|||+.|+|+.|+|+|+
T Consensus 32 ~~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kGfaFV~F~~~e~A~~Al~~lng~~i~Gr~l~V~~a 111 (144)
T PLN03134 32 LMSTKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNGRHIRVNPA 111 (144)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEeC
Confidence 44679999999999999999999999999999999999999999999999999999999999999999999999999997
Q ss_pred ch
Q 002335 296 QA 297 (935)
Q Consensus 296 ~~ 297 (935)
..
T Consensus 112 ~~ 113 (144)
T PLN03134 112 ND 113 (144)
T ss_pred Cc
Confidence 65
No 7
>KOG0121 consensus Nuclear cap-binding protein complex, subunit CBP20 (RRM superfamily) [RNA processing and modification]
Probab=99.47 E-value=6.4e-14 Score=130.78 Aligned_cols=82 Identities=22% Similarity=0.404 Sum_probs=79.0
Q ss_pred CCCcceeeccCCCCCCHHHHHHHHHhcCCcceeeeeccCCCCCCCceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEee
Q 002335 216 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVD 295 (935)
Q Consensus 216 ~~~~tlfVgnLp~~vte~~L~~lFs~~G~V~~vki~~d~~tgk~kgfgFVeF~~~e~A~~Al~~Lng~~i~gr~L~V~~a 295 (935)
..++|||||||++.++++.|.+||++||.|..|.+-.|+.+-..||||||+|.+.++|+.||+.|+|+.++.+.|+|+|+
T Consensus 34 r~S~tvyVgNlSfyttEEqiyELFs~cG~irriiMGLdr~kktpCGFCFVeyy~~~dA~~AlryisgtrLddr~ir~D~D 113 (153)
T KOG0121|consen 34 RKSCTVYVGNLSFYTTEEQIYELFSKCGDIRRIIMGLDRFKKTPCGFCFVEYYSRDDAEDALRYISGTRLDDRPIRIDWD 113 (153)
T ss_pred hhcceEEEeeeeeeecHHHHHHHHHhccchheeEeccccCCcCccceEEEEEecchhHHHHHHHhccCcccccceeeecc
Confidence 45899999999999999999999999999999999999989999999999999999999999999999999999999998
Q ss_pred ch
Q 002335 296 QA 297 (935)
Q Consensus 296 ~~ 297 (935)
..
T Consensus 114 ~G 115 (153)
T KOG0121|consen 114 AG 115 (153)
T ss_pred cc
Confidence 76
No 8
>KOG0415 consensus Predicted peptidyl prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.47 E-value=1.5e-13 Score=146.95 Aligned_cols=86 Identities=19% Similarity=0.342 Sum_probs=82.2
Q ss_pred CCCCcceeeccCCCCCCHHHHHHHHHhcCCcceeeeeccCCCCCCCceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEe
Q 002335 215 EKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKV 294 (935)
Q Consensus 215 ~~~~~tlfVgnLp~~vte~~L~~lFs~~G~V~~vki~~d~~tgk~kgfgFVeF~~~e~A~~Al~~Lng~~i~gr~L~V~~ 294 (935)
.++-+.|||+.|.+.+++++|.-||+.||.|.+|.||+|..||-+..|+||+|.+.++++.|.-.|+++.|+++.|.|+|
T Consensus 236 ~PPeNVLFVCKLNPVTtDeDLeiIFSrFG~i~sceVIRD~ktgdsLqyaFiEFen~escE~AyFKMdNvLIDDrRIHVDF 315 (479)
T KOG0415|consen 236 KPPENVLFVCKLNPVTTDEDLEIIFSRFGKIVSCEVIRDRKTGDSLQYAFIEFENKESCEQAYFKMDNVLIDDRRIHVDF 315 (479)
T ss_pred CCCcceEEEEecCCcccccchhhHHhhcccceeeeEEecccccchhheeeeeecchhhHHHHHhhhcceeeccceEEeeh
Confidence 45678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred echhHH
Q 002335 295 DQATRE 300 (935)
Q Consensus 295 a~~~~~ 300 (935)
+++..+
T Consensus 316 SQSVsk 321 (479)
T KOG0415|consen 316 SQSVSK 321 (479)
T ss_pred hhhhhh
Confidence 998755
No 9
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.45 E-value=4.8e-13 Score=151.45 Aligned_cols=83 Identities=17% Similarity=0.306 Sum_probs=78.7
Q ss_pred CCCcceeeccCCCCCCHHHHHHHHHhcCCcceeeeeccCCCCCCCceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEee
Q 002335 216 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVD 295 (935)
Q Consensus 216 ~~~~tlfVgnLp~~vte~~L~~lFs~~G~V~~vki~~d~~tgk~kgfgFVeF~~~e~A~~Al~~Lng~~i~gr~L~V~~a 295 (935)
....+|||+||++.+++++|..+|+.||.|.+|+|++++.+|.++|||||+|.+.++|..||..|||..|+|+.|.|+|.
T Consensus 267 ~~~~~lfV~NL~~~~~e~~L~~~F~~fG~v~~v~i~~d~~t~~skG~aFV~F~~~~~A~~Ai~~lnG~~~~gr~i~V~~~ 346 (352)
T TIGR01661 267 GAGYCIFVYNLSPDTDETVLWQLFGPFGAVQNVKIIRDLTTNQCKGYGFVSMTNYDEAAMAILSLNGYTLGNRVLQVSFK 346 (352)
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeEcCCCCCccceEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEc
Confidence 34568999999999999999999999999999999999889999999999999999999999999999999999999997
Q ss_pred chh
Q 002335 296 QAT 298 (935)
Q Consensus 296 ~~~ 298 (935)
..+
T Consensus 347 ~~~ 349 (352)
T TIGR01661 347 TNK 349 (352)
T ss_pred cCC
Confidence 764
No 10
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.39 E-value=8.2e-12 Score=140.68 Aligned_cols=83 Identities=16% Similarity=0.316 Sum_probs=79.0
Q ss_pred CCCCcceeeccCCCCCCHHHHHHHHHhcCCcceeeeeccCCCCCCCceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEe
Q 002335 215 EKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKV 294 (935)
Q Consensus 215 ~~~~~tlfVgnLp~~vte~~L~~lFs~~G~V~~vki~~d~~tgk~kgfgFVeF~~~e~A~~Al~~Lng~~i~gr~L~V~~ 294 (935)
....++|||+||++.+++++|+.+|..||.|+.|+|+.+..+|+++|||||+|.+.++|.+||..|||+.|.++.|+|.|
T Consensus 104 ~~~~~~LfVgnLp~~~te~~L~~lF~~~G~V~~v~i~~d~~tg~srGyaFVeF~~~e~A~~Ai~~LnG~~l~gr~i~V~~ 183 (346)
T TIGR01659 104 NNSGTNLIVNYLPQDMTDRELYALFRTIGPINTCRIMRDYKTGYSFGYAFVDFGSEADSQRAIKNLNGITVRNKRLKVSY 183 (346)
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccCcEEEEEEccHHHHHHHHHHcCCCccCCceeeeec
Confidence 34578999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred ech
Q 002335 295 DQA 297 (935)
Q Consensus 295 a~~ 297 (935)
+..
T Consensus 184 a~p 186 (346)
T TIGR01659 184 ARP 186 (346)
T ss_pred ccc
Confidence 764
No 11
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=99.37 E-value=1.2e-12 Score=146.89 Aligned_cols=87 Identities=18% Similarity=0.310 Sum_probs=80.5
Q ss_pred CCCcceeeccCCCCCCHHHHHHHHHhcCCcceeeeeccCCCCCCCceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEee
Q 002335 216 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVD 295 (935)
Q Consensus 216 ~~~~tlfVgnLp~~vte~~L~~lFs~~G~V~~vki~~d~~tgk~kgfgFVeF~~~e~A~~Al~~Lng~~i~gr~L~V~~a 295 (935)
.+...|+|.|||+.|...+|..+|+.||.|..|.|.+. .+|+.||||||.|....+|..||..|||+.|+||.|.|+|+
T Consensus 115 ~~k~rLIIRNLPf~~k~~dLk~vFs~~G~V~Ei~IP~k-~dgklcGFaFV~fk~~~dA~~Al~~~N~~~i~gR~VAVDWA 193 (678)
T KOG0127|consen 115 LPKWRLIIRNLPFKCKKPDLKNVFSNFGKVVEIVIPRK-KDGKLCGFAFVQFKEKKDAEKALEFFNGNKIDGRPVAVDWA 193 (678)
T ss_pred CccceEEeecCCcccCcHHHHHHHhhcceEEEEEcccC-CCCCccceEEEEEeeHHHHHHHHHhccCceecCceeEEeee
Confidence 34678999999999999999999999999999999976 68999999999999999999999999999999999999999
Q ss_pred chhHHHHH
Q 002335 296 QATREYLE 303 (935)
Q Consensus 296 ~~~~~~l~ 303 (935)
..+..|-.
T Consensus 194 V~Kd~ye~ 201 (678)
T KOG0127|consen 194 VDKDTYED 201 (678)
T ss_pred cccccccc
Confidence 99755543
No 12
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=99.37 E-value=1.7e-12 Score=111.14 Aligned_cols=70 Identities=33% Similarity=0.571 Sum_probs=67.6
Q ss_pred eeeccCCCCCCHHHHHHHHHhcCCcceeeeeccCCCCCCCceEEEEeCCHHHHHHHHHHhCCceeCCeEEE
Q 002335 221 VYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELM 291 (935)
Q Consensus 221 lfVgnLp~~vte~~L~~lFs~~G~V~~vki~~d~~tgk~kgfgFVeF~~~e~A~~Al~~Lng~~i~gr~L~ 291 (935)
|||+|||..+++.+|+.+|+.||.|..+.+..+ .++..++||||+|.+.++|..|+..|||+.|+|+.|+
T Consensus 1 l~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~-~~~~~~~~a~V~F~~~~~a~~a~~~l~g~~~~~~~ir 70 (70)
T PF00076_consen 1 LYVGNLPPDVTEEELRDFFSQFGKIESIKVMRN-SSGKSKGYAFVEFESEEDAEKALEELNGKKINGRKIR 70 (70)
T ss_dssp EEEESETTTSSHHHHHHHHHTTSTEEEEEEEEE-TTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred cEEcCCCCcCCHHHHHHHHHHhhhccccccccc-ccccccceEEEEEcCHHHHHHHHHHcCCCEECccCcC
Confidence 799999999999999999999999999999998 6899999999999999999999999999999999985
No 13
>KOG0113 consensus U1 small nuclear ribonucleoprotein (RRM superfamily) [RNA processing and modification]
Probab=99.36 E-value=2e-12 Score=136.39 Aligned_cols=93 Identities=16% Similarity=0.400 Sum_probs=85.3
Q ss_pred CCCCcceeeccCCCCCCHHHHHHHHHhcCCcceeeeeccCCCCCCCceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEe
Q 002335 215 EKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKV 294 (935)
Q Consensus 215 ~~~~~tlfVgnLp~~vte~~L~~lFs~~G~V~~vki~~d~~tgk~kgfgFVeF~~~e~A~~Al~~Lng~~i~gr~L~V~~ 294 (935)
..+.+||||+-|++.+++..|+..|..||.|+.|.||++..||+++|||||+|.+..+...|.+..+|..|+|+.|.|+|
T Consensus 98 gDPy~TLFv~RLnydT~EskLrreF~~YG~IkrirlV~d~vTgkskGYAFIeye~erdm~~AYK~adG~~Idgrri~VDv 177 (335)
T KOG0113|consen 98 GDPYKTLFVARLNYDTSESKLRREFEKYGPIKRIRLVRDKVTGKSKGYAFIEYEHERDMKAAYKDADGIKIDGRRILVDV 177 (335)
T ss_pred CCccceeeeeeccccccHHHHHHHHHhcCcceeEEEeeecccCCccceEEEEeccHHHHHHHHHhccCceecCcEEEEEe
Confidence 47799999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred echhHHHHHHHHHHh
Q 002335 295 DQATREYLERYVDKK 309 (935)
Q Consensus 295 a~~~~~~l~~~k~kk 309 (935)
.... .+..|...+
T Consensus 178 ERgR--TvkgW~PRR 190 (335)
T KOG0113|consen 178 ERGR--TVKGWLPRR 190 (335)
T ss_pred cccc--ccccccccc
Confidence 6654 556665544
No 14
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.36 E-value=1.6e-12 Score=147.11 Aligned_cols=81 Identities=19% Similarity=0.355 Sum_probs=77.6
Q ss_pred CCcceeeccCCCCCCHHHHHHHHHhcCCcceeeeeccCCCCCCCceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEeec
Q 002335 217 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVDQ 296 (935)
Q Consensus 217 ~~~tlfVgnLp~~vte~~L~~lFs~~G~V~~vki~~d~~tgk~kgfgFVeF~~~e~A~~Al~~Lng~~i~gr~L~V~~a~ 296 (935)
+.++|||+|||..+++++|+.+|+.||.|.+|+|++++.+|+++|||||+|.+.++|.+||..|||..|+|+.|.|.|+.
T Consensus 2 ~~~~l~V~nLp~~~~e~~l~~~F~~~G~i~~v~i~~d~~~g~s~g~afV~f~~~~~A~~Ai~~l~g~~l~g~~i~v~~a~ 81 (352)
T TIGR01661 2 SKTNLIVNYLPQTMTQEEIRSLFTSIGEIESCKLVRDKVTGQSLGYGFVNYVRPEDAEKAVNSLNGLRLQNKTIKVSYAR 81 (352)
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHccCCEEEEEEEEcCCCCccceEEEEEECcHHHHHHHHhhcccEEECCeeEEEEeec
Confidence 36799999999999999999999999999999999998899999999999999999999999999999999999999876
Q ss_pred h
Q 002335 297 A 297 (935)
Q Consensus 297 ~ 297 (935)
.
T Consensus 82 ~ 82 (352)
T TIGR01661 82 P 82 (352)
T ss_pred c
Confidence 4
No 15
>KOG0149 consensus Predicted RNA-binding protein SEB4 (RRM superfamily) [General function prediction only]
Probab=99.33 E-value=1.2e-12 Score=134.58 Aligned_cols=82 Identities=23% Similarity=0.336 Sum_probs=75.0
Q ss_pred CCCCcceeeccCCCCCCHHHHHHHHHhcCCcceeeeeccCCCCCCCceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEe
Q 002335 215 EKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKV 294 (935)
Q Consensus 215 ~~~~~tlfVgnLp~~vte~~L~~lFs~~G~V~~vki~~d~~tgk~kgfgFVeF~~~e~A~~Al~~Lng~~i~gr~L~V~~ 294 (935)
+...++||||+|+|.+..+.|+++|.+||.|+.+.||.|+.+|+++|||||+|.|.++|.+|+.- -.-.|+||+..|++
T Consensus 9 DT~~TKifVggL~w~T~~~~l~~yFeqfGeI~eavvitd~~t~rskGyGfVTf~d~~aa~rAc~d-p~piIdGR~aNcnl 87 (247)
T KOG0149|consen 9 DTTFTKIFVGGLAWETHKETLRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFRDAEAATRACKD-PNPIIDGRKANCNL 87 (247)
T ss_pred CceEEEEEEcCcccccchHHHHHHHHHhCceEEEEEEeccCCccccceeeEEeecHHHHHHHhcC-CCCcccccccccch
Confidence 34578999999999999999999999999999999999999999999999999999999999986 45789999988887
Q ss_pred ech
Q 002335 295 DQA 297 (935)
Q Consensus 295 a~~ 297 (935)
+--
T Consensus 88 A~l 90 (247)
T KOG0149|consen 88 ASL 90 (247)
T ss_pred hhh
Confidence 544
No 16
>KOG0122 consensus Translation initiation factor 3, subunit g (eIF-3g) [Translation, ribosomal structure and biogenesis]
Probab=99.30 E-value=1.3e-11 Score=127.23 Aligned_cols=82 Identities=23% Similarity=0.340 Sum_probs=79.2
Q ss_pred CCCcceeeccCCCCCCHHHHHHHHHhcCCcceeeeeccCCCCCCCceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEee
Q 002335 216 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVD 295 (935)
Q Consensus 216 ~~~~tlfVgnLp~~vte~~L~~lFs~~G~V~~vki~~d~~tgk~kgfgFVeF~~~e~A~~Al~~Lng~~i~gr~L~V~~a 295 (935)
...++|-|.||+.++++.+|..||..||.|.+|.|.+|+.||.++|||||.|.+.++|.+||..|||+.++.-.|+|.|+
T Consensus 187 ~D~~tvRvtNLsed~~E~dL~eLf~~fg~i~rvylardK~TG~~kGFAFVtF~sRddA~rAI~~LnG~gyd~LILrvEws 266 (270)
T KOG0122|consen 187 DDEATVRVTNLSEDMREDDLEELFRPFGPITRVYLARDKETGLSKGFAFVTFESRDDAARAIADLNGYGYDNLILRVEWS 266 (270)
T ss_pred CccceeEEecCccccChhHHHHHhhccCccceeEEEEccccCcccceEEEEEecHHHHHHHHHHccCcccceEEEEEEec
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred ch
Q 002335 296 QA 297 (935)
Q Consensus 296 ~~ 297 (935)
..
T Consensus 267 kP 268 (270)
T KOG0122|consen 267 KP 268 (270)
T ss_pred CC
Confidence 75
No 17
>PLN03213 repressor of silencing 3; Provisional
Probab=99.30 E-value=8e-12 Score=138.36 Aligned_cols=90 Identities=19% Similarity=0.351 Sum_probs=79.3
Q ss_pred CCCcceeeccCCCCCCHHHHHHHHHhcCCcceeeeeccCCCCCCCceEEEEeCCH--HHHHHHHHHhCCceeCCeEEEEE
Q 002335 216 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESA--EGVLRALRLLNKFNIDGQELMLK 293 (935)
Q Consensus 216 ~~~~tlfVgnLp~~vte~~L~~lFs~~G~V~~vki~~d~~tgk~kgfgFVeF~~~--e~A~~Al~~Lng~~i~gr~L~V~ 293 (935)
....+||||||++.+++++|..+|+.||.|.+|.|++ .+| +|||||+|... .++.+||..|||..+.|+.|+|.
T Consensus 8 ~~gMRIYVGNLSydVTEDDLravFSeFGsVkdVEIpR--ETG--RGFAFVEMssdddaEeeKAISaLNGAEWKGR~LKVN 83 (759)
T PLN03213 8 GGGVRLHVGGLGESVGRDDLLKIFSPMGTVDAVEFVR--TKG--RSFAYIDFSPSSTNSLTKLFSTYNGCVWKGGRLRLE 83 (759)
T ss_pred CcceEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEec--ccC--CceEEEEecCCcHHHHHHHHHHhcCCeecCceeEEe
Confidence 3457899999999999999999999999999999995 477 89999999987 78999999999999999999998
Q ss_pred eechhHHHHHHHHHHhhH
Q 002335 294 VDQATREYLERYVDKKTE 311 (935)
Q Consensus 294 ~a~~~~~~l~~~k~kk~e 311 (935)
.+. ..|+..++..+.+
T Consensus 84 KAK--P~YLeRLkrERee 99 (759)
T PLN03213 84 KAK--EHYLARLKREWEA 99 (759)
T ss_pred ecc--HHHHHHHHHHHHH
Confidence 665 4588888765543
No 18
>KOG0125 consensus Ataxin 2-binding protein (RRM superfamily) [General function prediction only]
Probab=99.30 E-value=7.3e-12 Score=133.57 Aligned_cols=81 Identities=19% Similarity=0.227 Sum_probs=76.0
Q ss_pred CCCcceeeccCCCCCCHHHHHHHHHhcCCcceeeeeccCCCCCCCceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEee
Q 002335 216 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVD 295 (935)
Q Consensus 216 ~~~~tlfVgnLp~~vte~~L~~lFs~~G~V~~vki~~d~~tgk~kgfgFVeF~~~e~A~~Al~~Lng~~i~gr~L~V~~a 295 (935)
...++|+|.|||+...+.+|+.+|.+||.|.+|.||.+ ...+||||||+|++.++|++|-..|||..|.||+|.|+.+
T Consensus 94 ~~pkRLhVSNIPFrFRdpDL~aMF~kfG~VldVEIIfN--ERGSKGFGFVTmen~~dadRARa~LHgt~VEGRkIEVn~A 171 (376)
T KOG0125|consen 94 DTPKRLHVSNIPFRFRDPDLRAMFEKFGKVLDVEIIFN--ERGSKGFGFVTMENPADADRARAELHGTVVEGRKIEVNNA 171 (376)
T ss_pred CCCceeEeecCCccccCccHHHHHHhhCceeeEEEEec--cCCCCccceEEecChhhHHHHHHHhhcceeeceEEEEecc
Confidence 44689999999999999999999999999999999996 5678999999999999999999999999999999999988
Q ss_pred chh
Q 002335 296 QAT 298 (935)
Q Consensus 296 ~~~ 298 (935)
..+
T Consensus 172 Tar 174 (376)
T KOG0125|consen 172 TAR 174 (376)
T ss_pred chh
Confidence 775
No 19
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=99.29 E-value=4.8e-12 Score=131.11 Aligned_cols=84 Identities=15% Similarity=0.266 Sum_probs=79.1
Q ss_pred CCCCCCCcceeeccCCCCCCHHHHHHHHHhcCCcceeeeeccCCCCCCCceEEEEeCCHHHHHHHHHHhCCceeCCeEEE
Q 002335 212 TPAEKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELM 291 (935)
Q Consensus 212 ~p~~~~~~tlfVgnLp~~vte~~L~~lFs~~G~V~~vki~~d~~tgk~kgfgFVeF~~~e~A~~Al~~Lng~~i~gr~L~ 291 (935)
.-..+..|+|||..||...++.+|..+|-.||.|++.+|..|+.|+.++|||||.|.+..++..||.+|||+.|+-++|+
T Consensus 279 qreGPeGCNlFIYHLPQEFgDaEliQmF~PFGhivSaKVFvDRATNQSKCFGFVSfDNp~SaQaAIqAMNGFQIGMKRLK 358 (371)
T KOG0146|consen 279 QREGPEGCNLFIYHLPQEFGDAELIQMFLPFGHIVSAKVFVDRATNQSKCFGFVSFDNPASAQAAIQAMNGFQIGMKRLK 358 (371)
T ss_pred hhcCCCcceEEEEeCchhhccHHHHHHhccccceeeeeeeehhccccccceeeEecCCchhHHHHHHHhcchhhhhhhhh
Confidence 44567799999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred EEee
Q 002335 292 LKVD 295 (935)
Q Consensus 292 V~~a 295 (935)
|.+-
T Consensus 359 VQLK 362 (371)
T KOG0146|consen 359 VQLK 362 (371)
T ss_pred hhhc
Confidence 8653
No 20
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.28 E-value=9.4e-12 Score=147.52 Aligned_cols=82 Identities=24% Similarity=0.428 Sum_probs=78.4
Q ss_pred CCCcceeeccCCCCCCHHHHHHHHHhcCCcceeeeeccCCCCCCCceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEee
Q 002335 216 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVD 295 (935)
Q Consensus 216 ~~~~tlfVgnLp~~vte~~L~~lFs~~G~V~~vki~~d~~tgk~kgfgFVeF~~~e~A~~Al~~Lng~~i~gr~L~V~~a 295 (935)
...++|||+||++.+++++|+.+|+.||.|.+|+|++++.+|+++|||||+|.+.++|..||..|||+.|+|+.|+|.++
T Consensus 202 ~~~~rLfVgnLp~~vteedLk~lFs~FG~I~svrl~~D~~tgksKGfGFVeFe~~e~A~kAI~amNg~elgGr~LrV~kA 281 (612)
T TIGR01645 202 KKFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIASMNLFDLGGQYLRVGKC 281 (612)
T ss_pred cccceEEeecCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcCCeEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEec
Confidence 34679999999999999999999999999999999999889999999999999999999999999999999999999988
Q ss_pred ch
Q 002335 296 QA 297 (935)
Q Consensus 296 ~~ 297 (935)
..
T Consensus 282 i~ 283 (612)
T TIGR01645 282 VT 283 (612)
T ss_pred CC
Confidence 85
No 21
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.26 E-value=9.6e-12 Score=147.44 Aligned_cols=80 Identities=28% Similarity=0.414 Sum_probs=76.2
Q ss_pred CCCcceeeccCCCCCCHHHHHHHHHhcCCcceeeeeccCCCCCCCceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEee
Q 002335 216 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVD 295 (935)
Q Consensus 216 ~~~~tlfVgnLp~~vte~~L~~lFs~~G~V~~vki~~d~~tgk~kgfgFVeF~~~e~A~~Al~~Lng~~i~gr~L~V~~a 295 (935)
...++||||||++.+++++|+.+|..||.|.+|+|+.|+.+|+++|||||+|.+.++|.+||..|||..|+|+.|+|.+.
T Consensus 105 ~~~~rLfVGnLp~~~tEe~Lr~lF~~fG~I~sV~I~~D~~TgkskGfAFVeF~s~e~A~~Ai~~lnG~~i~GR~IkV~rp 184 (612)
T TIGR01645 105 AIMCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGRP 184 (612)
T ss_pred cCCCEEEEcCCCCCCCHHHHHHHHHccCCEEEEEEeecCCCCCcCCeEEEEeCcHHHHHHHHHhcCCeEEecceeeeccc
Confidence 34689999999999999999999999999999999999999999999999999999999999999999999999999854
No 22
>KOG0126 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.25 E-value=5.8e-13 Score=131.35 Aligned_cols=81 Identities=21% Similarity=0.340 Sum_probs=76.7
Q ss_pred CCCcceeeccCCCCCCHHHHHHHHHhcCCcceeeeeccCCCCCCCceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEee
Q 002335 216 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVD 295 (935)
Q Consensus 216 ~~~~tlfVgnLp~~vte~~L~~lFs~~G~V~~vki~~d~~tgk~kgfgFVeF~~~e~A~~Al~~Lng~~i~gr~L~V~~a 295 (935)
..+.-|||||||+..|+.+|..+|+.||.|+.|.+++|..||+++||||+-|++..+..-||..|||+.|.||.|+|+..
T Consensus 33 kdsA~Iyiggl~~~LtEgDil~VFSqyGe~vdinLiRDk~TGKSKGFaFLcYEDQRSTILAVDN~NGiki~gRtirVDHv 112 (219)
T KOG0126|consen 33 KDSAYIYIGGLPYELTEGDILCVFSQYGEIVDINLIRDKKTGKSKGFAFLCYEDQRSTILAVDNLNGIKILGRTIRVDHV 112 (219)
T ss_pred ccceEEEECCCcccccCCcEEEEeeccCceEEEEEEecCCCCcccceEEEEecCccceEEEEeccCCceecceeEEeeec
Confidence 44677999999999999999999999999999999999999999999999999999999999999999999999999854
Q ss_pred c
Q 002335 296 Q 296 (935)
Q Consensus 296 ~ 296 (935)
.
T Consensus 113 ~ 113 (219)
T KOG0126|consen 113 S 113 (219)
T ss_pred c
Confidence 3
No 23
>PLN03120 nucleic acid binding protein; Provisional
Probab=99.23 E-value=2.3e-11 Score=129.29 Aligned_cols=76 Identities=14% Similarity=0.189 Sum_probs=70.0
Q ss_pred CcceeeccCCCCCCHHHHHHHHHhcCCcceeeeeccCCCCCCCceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEeech
Q 002335 218 QTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVDQA 297 (935)
Q Consensus 218 ~~tlfVgnLp~~vte~~L~~lFs~~G~V~~vki~~d~~tgk~kgfgFVeF~~~e~A~~Al~~Lng~~i~gr~L~V~~a~~ 297 (935)
.++||||||++.+++.+|+.+|+.||.|.+|.|+.+. ..+|||||+|.+.++|..||. |||..|+|+.|.|.++..
T Consensus 4 ~rtVfVgNLs~~tTE~dLrefFS~~G~I~~V~I~~d~---~~~GfAFVtF~d~eaAe~All-LnG~~l~gr~V~Vt~a~~ 79 (260)
T PLN03120 4 VRTVKVSNVSLKATERDIKEFFSFSGDIEYVEMQSEN---ERSQIAYVTFKDPQGAETALL-LSGATIVDQSVTITPAED 79 (260)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecC---CCCCEEEEEeCcHHHHHHHHH-hcCCeeCCceEEEEeccC
Confidence 5799999999999999999999999999999999874 356999999999999999995 899999999999988654
No 24
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=99.21 E-value=3.5e-11 Score=103.76 Aligned_cols=70 Identities=33% Similarity=0.575 Sum_probs=64.9
Q ss_pred eeeccCCCCCCHHHHHHHHHhcCCcceeeeeccCCCCCCCceEEEEeCCHHHHHHHHHHhCCceeCCeEEE
Q 002335 221 VYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELM 291 (935)
Q Consensus 221 lfVgnLp~~vte~~L~~lFs~~G~V~~vki~~d~~tgk~kgfgFVeF~~~e~A~~Al~~Lng~~i~gr~L~ 291 (935)
|||+|||+.+++++|..+|+.||.|..+.+..++. |..+|||||+|.+.++|.+|+..++|..|+|+.|.
T Consensus 1 v~i~nlp~~~~~~~l~~~f~~~g~v~~v~~~~~~~-~~~~~~a~v~f~~~~~a~~al~~~~~~~~~g~~l~ 70 (70)
T PF14259_consen 1 VYISNLPPSTTEEDLRNFFSRFGPVEKVRLIKNKD-GQSRGFAFVEFSSEEDAKRALELLNGKEIDGRKLR 70 (70)
T ss_dssp EEEESSTTT--HHHHHHHCTTSSBEEEEEEEESTT-SSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CEEeCCCCCCCHHHHHHHHHhcCCcceEEEEeeec-cccCCEEEEEeCCHHHHHHHHHHCCCcEECCEEcC
Confidence 79999999999999999999999999999999865 99999999999999999999999999999999884
No 25
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.21 E-value=3.2e-11 Score=135.95 Aligned_cols=82 Identities=23% Similarity=0.387 Sum_probs=76.1
Q ss_pred CCcceeeccCCCCCCHHHHHHHHHhcCCcceeeeeccCCCCCCCceEEEEeCCHHHHHHHHHHhCCceeCC--eEEEEEe
Q 002335 217 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDG--QELMLKV 294 (935)
Q Consensus 217 ~~~tlfVgnLp~~vte~~L~~lFs~~G~V~~vki~~d~~tgk~kgfgFVeF~~~e~A~~Al~~Lng~~i~g--r~L~V~~ 294 (935)
..++|||+||+..+++++|+.+|+.||.|..|+|+.+..+|+++|||||+|.+.++|.+||..||++.|.+ +.|.|.|
T Consensus 192 ~~~~lfV~nLp~~vtee~L~~~F~~fG~V~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~~~g~~~~l~V~~ 271 (346)
T TIGR01659 192 KDTNLYVTNLPRTITDDQLDTIFGKYGQIVQKNILRDKLTGTPRGVAFVRFNKREEAQEAISALNNVIPEGGSQPLTVRL 271 (346)
T ss_pred ccceeEEeCCCCcccHHHHHHHHHhcCCEEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCccCCCceeEEEEE
Confidence 35789999999999999999999999999999999998899999999999999999999999999999876 6788888
Q ss_pred echh
Q 002335 295 DQAT 298 (935)
Q Consensus 295 a~~~ 298 (935)
+...
T Consensus 272 a~~~ 275 (346)
T TIGR01659 272 AEEH 275 (346)
T ss_pred CCcc
Confidence 7753
No 26
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.20 E-value=2.3e-11 Score=126.83 Aligned_cols=82 Identities=21% Similarity=0.352 Sum_probs=79.2
Q ss_pred CcceeeccCCCCCCHHHHHHHHHhcCCcceeeeeccCCCCCCCceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEeech
Q 002335 218 QTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVDQA 297 (935)
Q Consensus 218 ~~tlfVgnLp~~vte~~L~~lFs~~G~V~~vki~~d~~tgk~kgfgFVeF~~~e~A~~Al~~Lng~~i~gr~L~V~~a~~ 297 (935)
...+|||.|...++.+.|+..|..||.|..++||+|..|+|++|||||.|-..++|++||..|||.-|++|.|+.+|+..
T Consensus 62 hfhvfvgdls~eI~~e~lr~aF~pFGevS~akvirD~~T~KsKGYgFVSf~~k~dAEnAI~~MnGqWlG~R~IRTNWATR 141 (321)
T KOG0148|consen 62 HFHVFVGDLSPEIDNEKLREAFAPFGEVSDAKVIRDMNTGKSKGYGFVSFPNKEDAENAIQQMNGQWLGRRTIRTNWATR 141 (321)
T ss_pred ceeEEehhcchhcchHHHHHHhccccccccceEeecccCCcccceeEEeccchHHHHHHHHHhCCeeeccceeecccccc
Confidence 66799999999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred hH
Q 002335 298 TR 299 (935)
Q Consensus 298 ~~ 299 (935)
+.
T Consensus 142 Kp 143 (321)
T KOG0148|consen 142 KP 143 (321)
T ss_pred Cc
Confidence 63
No 27
>KOG0108 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA15 [RNA processing and modification]
Probab=99.20 E-value=2.9e-11 Score=138.18 Aligned_cols=81 Identities=33% Similarity=0.598 Sum_probs=79.0
Q ss_pred cceeeccCCCCCCHHHHHHHHHhcCCcceeeeeccCCCCCCCceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEeechh
Q 002335 219 TKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVDQAT 298 (935)
Q Consensus 219 ~tlfVgnLp~~vte~~L~~lFs~~G~V~~vki~~d~~tgk~kgfgFVeF~~~e~A~~Al~~Lng~~i~gr~L~V~~a~~~ 298 (935)
+.||||||++.++++.|..+|+..|.|.+++++.|+.+|+++|||||+|.+.+.+.+|++.|||..++|++|+|+|+...
T Consensus 19 ~~v~vgnip~~~se~~l~~~~~~~g~v~s~~~v~D~~tG~~~G~~f~~~~~~~~~~~a~~~lNg~~~~gr~l~v~~~~~~ 98 (435)
T KOG0108|consen 19 SSVFVGNIPYEGSEEQLLSIFSGVGPVLSFRLVYDRETGKPKGFGFCEFTDEETAERAIRNLNGAEFNGRKLRVNYASNR 98 (435)
T ss_pred cceEecCCCCcccHHHHHHHHhccCccceeeecccccCCCcCceeeEecCchhhHHHHHHhcCCcccCCceEEeeccccc
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999998876
Q ss_pred H
Q 002335 299 R 299 (935)
Q Consensus 299 ~ 299 (935)
+
T Consensus 99 ~ 99 (435)
T KOG0108|consen 99 K 99 (435)
T ss_pred c
Confidence 3
No 28
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.18 E-value=7e-11 Score=140.60 Aligned_cols=82 Identities=20% Similarity=0.399 Sum_probs=78.0
Q ss_pred CCCcceeeccCCCCCCHHHHHHHHHhcCCcceeeeeccCCCCCCCceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEee
Q 002335 216 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVD 295 (935)
Q Consensus 216 ~~~~tlfVgnLp~~vte~~L~~lFs~~G~V~~vki~~d~~tgk~kgfgFVeF~~~e~A~~Al~~Lng~~i~gr~L~V~~a 295 (935)
...++||||||++.+++++|..+|..||.|..|.|+.+..+|.++|||||+|.+.+.|..||..|||+.|+|+.|.|.++
T Consensus 293 ~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~A~~~l~g~~~~~~~l~v~~a 372 (509)
T TIGR01642 293 DSKDRIYIGNLPLYLGEDQIKELLESFGDLKAFNLIKDIATGLSKGYAFCEYKDPSVTDVAIAALNGKDTGDNKLHVQRA 372 (509)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEC
Confidence 34689999999999999999999999999999999999889999999999999999999999999999999999999997
Q ss_pred ch
Q 002335 296 QA 297 (935)
Q Consensus 296 ~~ 297 (935)
..
T Consensus 373 ~~ 374 (509)
T TIGR01642 373 CV 374 (509)
T ss_pred cc
Confidence 64
No 29
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=99.18 E-value=7.5e-11 Score=121.98 Aligned_cols=80 Identities=20% Similarity=0.329 Sum_probs=76.8
Q ss_pred CcceeeccCCCCCCHHHHHHHHHhcCCcceeeeeccCCCCCCCceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEeech
Q 002335 218 QTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVDQA 297 (935)
Q Consensus 218 ~~tlfVgnLp~~vte~~L~~lFs~~G~V~~vki~~d~~tgk~kgfgFVeF~~~e~A~~Al~~Lng~~i~gr~L~V~~a~~ 297 (935)
..+|||.||.+++.+.-|.++|+.||.|.+|+|++|..+.+++|||||.+.+.++|..||..|||+.++++.|.|.|-..
T Consensus 278 g~ciFvYNLspd~de~~LWQlFgpFGAv~nVKvirD~ttnkCKGfgFVtMtNYdEAamAi~sLNGy~lg~rvLQVsFKtn 357 (360)
T KOG0145|consen 278 GWCIFVYNLSPDADESILWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVSFKTN 357 (360)
T ss_pred eeEEEEEecCCCchHhHHHHHhCcccceeeEEEEecCCcccccceeEEEecchHHHHHHHHHhcCccccceEEEEEEecC
Confidence 67899999999999999999999999999999999998999999999999999999999999999999999999998554
No 30
>KOG0107 consensus Alternative splicing factor SRp20/9G8 (RRM superfamily) [RNA processing and modification]
Probab=99.18 E-value=3.9e-11 Score=118.26 Aligned_cols=75 Identities=29% Similarity=0.469 Sum_probs=69.3
Q ss_pred CcceeeccCCCCCCHHHHHHHHHhcCCcceeeeeccCCCCCCCceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEeech
Q 002335 218 QTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVDQA 297 (935)
Q Consensus 218 ~~tlfVgnLp~~vte~~L~~lFs~~G~V~~vki~~d~~tgk~kgfgFVeF~~~e~A~~Al~~Lng~~i~gr~L~V~~a~~ 297 (935)
.+.||||||+..++..+|..+|..||.|.+|-|..+ ..|||||+|++..+|+.|+..|+|..|+|..|.|.+...
T Consensus 10 ~~kVYVGnL~~~a~k~eLE~~F~~yG~lrsvWvArn-----PPGfAFVEFed~RDA~DAvr~LDG~~~cG~r~rVE~S~G 84 (195)
T KOG0107|consen 10 NTKVYVGNLGSRATKRELERAFSKYGPLRSVWVARN-----PPGFAFVEFEDPRDAEDAVRYLDGKDICGSRIRVELSTG 84 (195)
T ss_pred CceEEeccCCCCcchHHHHHHHHhcCcceeEEEeec-----CCCceEEeccCcccHHHHHhhcCCccccCceEEEEeecC
Confidence 689999999999999999999999999998777664 369999999999999999999999999999999987665
No 31
>KOG4207 consensus Predicted splicing factor, SR protein superfamily [RNA processing and modification]
Probab=99.17 E-value=3.9e-11 Score=120.70 Aligned_cols=81 Identities=20% Similarity=0.276 Sum_probs=76.9
Q ss_pred CCcceeeccCCCCCCHHHHHHHHHhcCCcceeeeeccCCCCCCCceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEeec
Q 002335 217 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVDQ 296 (935)
Q Consensus 217 ~~~tlfVgnLp~~vte~~L~~lFs~~G~V~~vki~~d~~tgk~kgfgFVeF~~~e~A~~Al~~Lng~~i~gr~L~V~~a~ 296 (935)
.-++|-|-||.+.++.++|+.+|.+||.|-.|.|..|+.|+.++|||||-|.+..+|+.|+.+|+|.+|+|+.|.|.++.
T Consensus 12 gm~SLkVdNLTyRTspd~LrrvFekYG~vgDVyIPrdr~Tr~sRgFaFVrf~~k~daedA~damDG~~ldgRelrVq~ar 91 (256)
T KOG4207|consen 12 GMTSLKVDNLTYRTSPDDLRRVFEKYGRVGDVYIPRDRYTRQSRGFAFVRFHDKRDAEDALDAMDGAVLDGRELRVQMAR 91 (256)
T ss_pred cceeEEecceeccCCHHHHHHHHHHhCcccceecccccccccccceeEEEeeecchHHHHHHhhcceeeccceeeehhhh
Confidence 35789999999999999999999999999999999999999999999999999999999999999999999999997755
Q ss_pred h
Q 002335 297 A 297 (935)
Q Consensus 297 ~ 297 (935)
-
T Consensus 92 y 92 (256)
T KOG4207|consen 92 Y 92 (256)
T ss_pred c
Confidence 3
No 32
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.15 E-value=8.6e-11 Score=138.02 Aligned_cols=80 Identities=26% Similarity=0.489 Sum_probs=77.2
Q ss_pred CcceeeccCCCCCCHHHHHHHHHhcCCcceeeeeccCCCCCCCceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEeech
Q 002335 218 QTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVDQA 297 (935)
Q Consensus 218 ~~tlfVgnLp~~vte~~L~~lFs~~G~V~~vki~~d~~tgk~kgfgFVeF~~~e~A~~Al~~Lng~~i~gr~L~V~~a~~ 297 (935)
.++|||+||+..+++++|..+|+.||.|..|.++.+..+|+++|||||+|.+.++|..||..|||+.|+|+.|.|.|+..
T Consensus 186 ~~~l~v~nl~~~~te~~l~~~f~~~G~i~~v~~~~d~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~i~g~~i~v~~a~~ 265 (457)
T TIGR01622 186 FLKLYVGNLHFNITEQELRQIFEPFGDIEDVQLHRDPETGRSKGFGFIQFHDAEEAKEALEVMNGFELAGRPIKVGYAQD 265 (457)
T ss_pred CCEEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhcCCcEECCEEEEEEEccC
Confidence 68999999999999999999999999999999999988899999999999999999999999999999999999999774
No 33
>smart00362 RRM_2 RNA recognition motif.
Probab=99.14 E-value=2.1e-10 Score=97.15 Aligned_cols=72 Identities=29% Similarity=0.537 Sum_probs=67.7
Q ss_pred ceeeccCCCCCCHHHHHHHHHhcCCcceeeeeccCCCCCCCceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEE
Q 002335 220 KVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLK 293 (935)
Q Consensus 220 tlfVgnLp~~vte~~L~~lFs~~G~V~~vki~~d~~tgk~kgfgFVeF~~~e~A~~Al~~Lng~~i~gr~L~V~ 293 (935)
+|||+||+..++..+|+.+|..||.|..+.+..+. +.+.|||||+|.+.+.|..|+..|+|..|+|+.|.|.
T Consensus 1 ~v~i~~l~~~~~~~~l~~~~~~~g~v~~~~~~~~~--~~~~~~~~v~f~~~~~a~~a~~~~~~~~~~~~~i~v~ 72 (72)
T smart00362 1 TLFVGNLPPDVTEEDLKELFSKFGPIESVKIPKDT--GKSKGFAFVEFESEEDAEKAIEALNGTKLGGRPLRVE 72 (72)
T ss_pred CEEEcCCCCcCCHHHHHHHHHhcCCEEEEEEecCC--CCCCceEEEEeCCHHHHHHHHHHhCCcEECCEEEeeC
Confidence 58999999999999999999999999999998874 7889999999999999999999999999999998873
No 34
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.13 E-value=1.6e-10 Score=139.45 Aligned_cols=88 Identities=22% Similarity=0.375 Sum_probs=81.1
Q ss_pred CCCcceeeccCCCCCCHHHHHHHHHhcCCcceeeeeccCCCCCCCceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEee
Q 002335 216 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVD 295 (935)
Q Consensus 216 ~~~~tlfVgnLp~~vte~~L~~lFs~~G~V~~vki~~d~~tgk~kgfgFVeF~~~e~A~~Al~~Lng~~i~gr~L~V~~a 295 (935)
...++|||+||+..+++++|+.+|+.||.|.+|+|+.+ .+|.++|||||+|.+.++|.+||..|||..|+|+.|.|.|+
T Consensus 283 ~~~~~l~V~nl~~~~~~~~L~~~F~~~G~i~~~~i~~d-~~g~~~g~gfV~f~~~~~A~~A~~~~~g~~~~gk~l~V~~a 361 (562)
T TIGR01628 283 AQGVNLYVKNLDDTVTDEKLRELFSECGEITSAKVMLD-EKGVSRGFGFVCFSNPEEANRAVTEMHGRMLGGKPLYVALA 361 (562)
T ss_pred cCCCEEEEeCCCCccCHHHHHHHHHhcCCeEEEEEEEC-CCCCcCCeEEEEeCCHHHHHHHHHHhcCCeeCCceeEEEec
Confidence 34678999999999999999999999999999999999 79999999999999999999999999999999999999999
Q ss_pred chhHHHHHH
Q 002335 296 QATREYLER 304 (935)
Q Consensus 296 ~~~~~~l~~ 304 (935)
..+......
T Consensus 362 ~~k~~~~~~ 370 (562)
T TIGR01628 362 QRKEQRRAH 370 (562)
T ss_pred cCcHHHHHH
Confidence 887554443
No 35
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.11 E-value=1.6e-10 Score=139.42 Aligned_cols=78 Identities=22% Similarity=0.400 Sum_probs=75.1
Q ss_pred ceeeccCCCCCCHHHHHHHHHhcCCcceeeeeccCCCCCCCceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEeech
Q 002335 220 KVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVDQA 297 (935)
Q Consensus 220 tlfVgnLp~~vte~~L~~lFs~~G~V~~vki~~d~~tgk~kgfgFVeF~~~e~A~~Al~~Lng~~i~gr~L~V~~a~~ 297 (935)
+||||||+..+++++|..+|+.||.|.+|+|++|..+++++|||||+|.+.++|.+||..||+..|+|+.|+|.|+..
T Consensus 2 sl~VgnLp~~vte~~L~~~F~~~G~v~~v~v~~d~~t~~s~G~afV~F~~~~~A~~Al~~ln~~~i~gk~i~i~~s~~ 79 (562)
T TIGR01628 2 SLYVGDLDPDVTEAKLYDLFKPFGPVLSVRVCRDSVTRRSLGYGYVNFQNPADAERALETMNFKRLGGKPIRIMWSQR 79 (562)
T ss_pred eEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeeEEeecccc
Confidence 799999999999999999999999999999999988999999999999999999999999999999999999998753
No 36
>PLN03121 nucleic acid binding protein; Provisional
Probab=99.11 E-value=2.1e-10 Score=120.16 Aligned_cols=76 Identities=17% Similarity=0.195 Sum_probs=68.7
Q ss_pred CCcceeeccCCCCCCHHHHHHHHHhcCCcceeeeeccCCCCCCCceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEeec
Q 002335 217 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVDQ 296 (935)
Q Consensus 217 ~~~tlfVgnLp~~vte~~L~~lFs~~G~V~~vki~~d~~tgk~kgfgFVeF~~~e~A~~Al~~Lng~~i~gr~L~V~~a~ 296 (935)
...+|||+||++.+++.+|+.+|+.||.|.+|.|+++ +..++||||+|.+.+++..||. |||..|.++.|.|.-..
T Consensus 4 ~g~TV~V~NLS~~tTE~dLrefFS~~G~I~~V~I~~D---~et~gfAfVtF~d~~aaetAll-LnGa~l~d~~I~It~~~ 79 (243)
T PLN03121 4 GGYTAEVTNLSPKATEKDVYDFFSHCGAIEHVEIIRS---GEYACTAYVTFKDAYALETAVL-LSGATIVDQRVCITRWG 79 (243)
T ss_pred CceEEEEecCCCCCCHHHHHHHHHhcCCeEEEEEecC---CCcceEEEEEECCHHHHHHHHh-cCCCeeCCceEEEEeCc
Confidence 3579999999999999999999999999999999987 4556899999999999999994 89999999999886443
No 37
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=99.10 E-value=1.6e-10 Score=119.59 Aligned_cols=89 Identities=16% Similarity=0.346 Sum_probs=83.5
Q ss_pred CCCCcceeeccCCCCCCHHHHHHHHHhcCCcceeeeeccCCCCCCCceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEe
Q 002335 215 EKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKV 294 (935)
Q Consensus 215 ~~~~~tlfVgnLp~~vte~~L~~lFs~~G~V~~vki~~d~~tgk~kgfgFVeF~~~e~A~~Al~~Lng~~i~gr~L~V~~ 294 (935)
+...++|.|.-||.+++.++|+.||+..|.|.+|++++|+.+|.+-|||||.|.++.+|++||..|||+.+..+.|+|.+
T Consensus 38 ~~skTNLIvNYLPQ~MTqdE~rSLF~SiGeiEScKLvRDKitGqSLGYGFVNYv~p~DAe~AintlNGLrLQ~KTIKVSy 117 (360)
T KOG0145|consen 38 DESKTNLIVNYLPQNMTQDELRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVRPKDAEKAINTLNGLRLQNKTIKVSY 117 (360)
T ss_pred CcccceeeeeecccccCHHHHHHHhhcccceeeeeeeeccccccccccceeeecChHHHHHHHhhhcceeeccceEEEEe
Confidence 35568899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred echhHHHHH
Q 002335 295 DQATREYLE 303 (935)
Q Consensus 295 a~~~~~~l~ 303 (935)
+....+.|.
T Consensus 118 ARPSs~~Ik 126 (360)
T KOG0145|consen 118 ARPSSDSIK 126 (360)
T ss_pred ccCChhhhc
Confidence 998865543
No 38
>smart00360 RRM RNA recognition motif.
Probab=99.08 E-value=4.3e-10 Score=94.80 Aligned_cols=70 Identities=31% Similarity=0.539 Sum_probs=66.7
Q ss_pred eccCCCCCCHHHHHHHHHhcCCcceeeeeccCCCCCCCceEEEEeCCHHHHHHHHHHhCCceeCCeEEEE
Q 002335 223 VGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELML 292 (935)
Q Consensus 223 VgnLp~~vte~~L~~lFs~~G~V~~vki~~d~~tgk~kgfgFVeF~~~e~A~~Al~~Lng~~i~gr~L~V 292 (935)
|+||+..+++++|+.+|..||.|..+.+..+..++.++|||||+|.+.++|..|+..|+|..|+|+.|.|
T Consensus 1 i~~l~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~a~v~f~~~~~a~~a~~~~~~~~~~~~~~~v 70 (71)
T smart00360 1 VGNLPPDVTEEELRELFSKFGKIESVRLVRDKDTGKSKGFAFVEFESEEDAEKALEALNGKELDGRPLKV 70 (71)
T ss_pred CCCCCcccCHHHHHHHHHhhCCEeEEEEEeCCCCCCCCceEEEEeCCHHHHHHHHHHcCCCeeCCcEEEe
Confidence 6899999999999999999999999999988778999999999999999999999999999999999887
No 39
>KOG0114 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.08 E-value=6.9e-10 Score=100.51 Aligned_cols=82 Identities=16% Similarity=0.279 Sum_probs=73.8
Q ss_pred CcceeeccCCCCCCHHHHHHHHHhcCCcceeeeeccCCCCCCCceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEeech
Q 002335 218 QTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVDQA 297 (935)
Q Consensus 218 ~~tlfVgnLp~~vte~~L~~lFs~~G~V~~vki~~d~~tgk~kgfgFVeF~~~e~A~~Al~~Lng~~i~gr~L~V~~a~~ 297 (935)
.+.|||.|||+.+|.+++..||++||.|..++|-.. ...+|-|||.|++..+|.+|+..|+|+.++++-|.|-+-+.
T Consensus 18 nriLyirNLp~~ITseemydlFGkyg~IrQIRiG~~---k~TrGTAFVVYedi~dAk~A~dhlsg~n~~~ryl~vlyyq~ 94 (124)
T KOG0114|consen 18 NRILYIRNLPFKITSEEMYDLFGKYGTIRQIRIGNT---KETRGTAFVVYEDIFDAKKACDHLSGYNVDNRYLVVLYYQP 94 (124)
T ss_pred heeEEEecCCccccHHHHHHHhhcccceEEEEecCc---cCcCceEEEEehHhhhHHHHHHHhcccccCCceEEEEecCH
Confidence 578999999999999999999999999999998654 45579999999999999999999999999999999998777
Q ss_pred hHHHH
Q 002335 298 TREYL 302 (935)
Q Consensus 298 ~~~~l 302 (935)
...+.
T Consensus 95 ~~~~~ 99 (124)
T KOG0114|consen 95 EDAFK 99 (124)
T ss_pred HHHHH
Confidence 65443
No 40
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=99.08 E-value=2.9e-10 Score=125.74 Aligned_cols=84 Identities=25% Similarity=0.400 Sum_probs=78.8
Q ss_pred CCCcceeeccCCCCCCHHHHHHHHHhcCCcceeeeeccCCCCCCCceEEEEeCCHHHHHHHHHHhCCceeC-CeEEEEEe
Q 002335 216 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNID-GQELMLKV 294 (935)
Q Consensus 216 ~~~~tlfVgnLp~~vte~~L~~lFs~~G~V~~vki~~d~~tgk~kgfgFVeF~~~e~A~~Al~~Lng~~i~-gr~L~V~~ 294 (935)
...+-||||.||.++.+++|.-||.+.|.|-.++++.|+.+|.++|||||+|++.+.|..||+.||+++|. |+.|.|++
T Consensus 81 ~~G~EVfvGkIPrD~~EdeLvplfEkiG~I~elRLMmD~~sG~nRGYAFVtf~~Ke~Aq~Aik~lnn~Eir~GK~igvc~ 160 (506)
T KOG0117|consen 81 PRGCEVFVGKIPRDVFEDELVPLFEKIGKIYELRLMMDPFSGDNRGYAFVTFCTKEEAQEAIKELNNYEIRPGKLLGVCV 160 (506)
T ss_pred CCCceEEecCCCccccchhhHHHHHhccceeeEEEeecccCCCCcceEEEEeecHHHHHHHHHHhhCccccCCCEeEEEE
Confidence 44789999999999999999999999999999999999999999999999999999999999999999996 89999988
Q ss_pred echhH
Q 002335 295 DQATR 299 (935)
Q Consensus 295 a~~~~ 299 (935)
+...-
T Consensus 161 Svan~ 165 (506)
T KOG0117|consen 161 SVANC 165 (506)
T ss_pred eeecc
Confidence 77654
No 41
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=99.08 E-value=3.2e-10 Score=120.94 Aligned_cols=80 Identities=26% Similarity=0.457 Sum_probs=77.1
Q ss_pred CcceeeccCCCCCCHHHHHHHHHhcCCcceeeeeccCCCCCCCceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEeech
Q 002335 218 QTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVDQA 297 (935)
Q Consensus 218 ~~tlfVgnLp~~vte~~L~~lFs~~G~V~~vki~~d~~tgk~kgfgFVeF~~~e~A~~Al~~Lng~~i~gr~L~V~~a~~ 297 (935)
.++||||||++.+++++|..+|..||.|..+.+..++.+|+++|||||+|.+.+++..|+..|+|..|.|+.|.|.+...
T Consensus 115 ~~~l~v~nL~~~~~~~~l~~~F~~~g~~~~~~~~~d~~~~~~~g~~~v~f~~~~~~~~a~~~~~~~~~~~~~~~v~~~~~ 194 (306)
T COG0724 115 NNTLFVGNLPYDVTEEDLRELFKKFGPVKRVRLVRDRETGKSRGFAFVEFESEESAEKAIEELNGKELEGRPLRVQKAQP 194 (306)
T ss_pred CceEEEeCCCCCCCHHHHHHHHHhcCceeEEEeeeccccCccCceEEEEecCHHHHHHHHHHcCCCeECCceeEeecccc
Confidence 69999999999999999999999999999999999988999999999999999999999999999999999999998654
No 42
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.08 E-value=2e-10 Score=136.17 Aligned_cols=79 Identities=24% Similarity=0.418 Sum_probs=73.6
Q ss_pred CCcceeeccCCCCCCHHHHHHHHHhcCCcceeeeeccCCCCCCCceEEEEeCCHHHHHHHHHHhCCceeC-CeEEEEEee
Q 002335 217 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNID-GQELMLKVD 295 (935)
Q Consensus 217 ~~~tlfVgnLp~~vte~~L~~lFs~~G~V~~vki~~d~~tgk~kgfgFVeF~~~e~A~~Al~~Lng~~i~-gr~L~V~~a 295 (935)
..++|||+||+..+++++|..+|+.||.|..|+|++| .+|+++|||||+|.+.++|..||..||++.|. |+.|.|.++
T Consensus 57 ~~~~lFVgnLp~~~tEd~L~~~F~~~G~I~~vrl~~D-~sG~sRGfaFV~F~~~e~A~~Ai~~lng~~i~~Gr~l~V~~S 135 (578)
T TIGR01648 57 RGCEVFVGKIPRDLYEDELVPLFEKAGPIYELRLMMD-FSGQNRGYAFVTFCGKEEAKEAVKLLNNYEIRPGRLLGVCIS 135 (578)
T ss_pred CCCEEEeCCCCCCCCHHHHHHHHHhhCCEEEEEEEEC-CCCCccceEEEEeCCHHHHHHHHHHcCCCeecCCcccccccc
Confidence 3589999999999999999999999999999999999 79999999999999999999999999999995 788877765
Q ss_pred c
Q 002335 296 Q 296 (935)
Q Consensus 296 ~ 296 (935)
.
T Consensus 136 ~ 136 (578)
T TIGR01648 136 V 136 (578)
T ss_pred c
Confidence 4
No 43
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.07 E-value=3.8e-10 Score=132.56 Aligned_cols=82 Identities=23% Similarity=0.356 Sum_probs=76.6
Q ss_pred CCCCcceeeccCCCCCCHHHHHHHHHhcCCcceeeeeccCCCCCCCceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEe
Q 002335 215 EKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKV 294 (935)
Q Consensus 215 ~~~~~tlfVgnLp~~vte~~L~~lFs~~G~V~~vki~~d~~tgk~kgfgFVeF~~~e~A~~Al~~Lng~~i~gr~L~V~~ 294 (935)
....++|||+||+..+++.+|+.+|+.||.|..|+|+.++.+|+++|||||+|.+.++|.+||. |+|..|.|+.|.|.+
T Consensus 86 ~~~~~~l~V~nlp~~~~~~~l~~~F~~~G~v~~v~i~~d~~~~~skg~afVeF~~~e~A~~Al~-l~g~~~~g~~i~v~~ 164 (457)
T TIGR01622 86 ERDDRTVFVLQLALKARERDLYEFFSKVGKVRDVQCIKDRNSRRSKGVAYVEFYDVESVIKALA-LTGQMLLGRPIIVQS 164 (457)
T ss_pred ccCCcEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEECCHHHHHHHHH-hCCCEECCeeeEEee
Confidence 4557899999999999999999999999999999999999999999999999999999999997 799999999999987
Q ss_pred ech
Q 002335 295 DQA 297 (935)
Q Consensus 295 a~~ 297 (935)
...
T Consensus 165 ~~~ 167 (457)
T TIGR01622 165 SQA 167 (457)
T ss_pred cch
Confidence 543
No 44
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=99.06 E-value=1.4e-10 Score=114.92 Aligned_cols=81 Identities=19% Similarity=0.415 Sum_probs=76.7
Q ss_pred CCCcceeeccCCCCCCHHHHHHHHHhcCCcceeeeeccCCCCCCCceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEee
Q 002335 216 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVD 295 (935)
Q Consensus 216 ~~~~tlfVgnLp~~vte~~L~~lFs~~G~V~~vki~~d~~tgk~kgfgFVeF~~~e~A~~Al~~Lng~~i~gr~L~V~~a 295 (935)
....|||||||+..+++..|.++|-++|.|+++.+.+|+-+.+.+|||||+|.+.++|.-||..||.+.+-|+.|+|+.+
T Consensus 7 nqd~tiyvgnld~kvs~~~l~EL~iqagpVv~i~iPkDrv~~~~qGygF~Ef~~eedadYAikiln~VkLYgrpIrv~ka 86 (203)
T KOG0131|consen 7 NQDATLYVGNLDEKVSEELLYELFIQAGPVVNLHIPKDRVTQKHQGYGFAEFRTEEDADYAIKILNMVKLYGRPIRVNKA 86 (203)
T ss_pred CCCceEEEecCCHHHHHHHHHHHHHhcCceeeeecchhhhcccccceeEEEEechhhhHHHHHHHHHHHhcCceeEEEec
Confidence 44689999999999999999999999999999999999999999999999999999999999999999999999999755
Q ss_pred c
Q 002335 296 Q 296 (935)
Q Consensus 296 ~ 296 (935)
.
T Consensus 87 s 87 (203)
T KOG0131|consen 87 S 87 (203)
T ss_pred c
Confidence 4
No 45
>KOG0111 consensus Cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.05 E-value=8.1e-11 Score=119.18 Aligned_cols=84 Identities=21% Similarity=0.395 Sum_probs=80.0
Q ss_pred CCCcceeeccCCCCCCHHHHHHHHHhcCCcceeeeeccCCCCCCCceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEee
Q 002335 216 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVD 295 (935)
Q Consensus 216 ~~~~tlfVgnLp~~vte~~L~~lFs~~G~V~~vki~~d~~tgk~kgfgFVeF~~~e~A~~Al~~Lng~~i~gr~L~V~~a 295 (935)
...+|||||+|...|++.-|...|-.||.|..|.+..|-.+++++|||||+|...++|..||..||+.++.|+.|+|+++
T Consensus 8 ~~KrtlYVGGladeVtekvLhaAFIPFGDI~dIqiPlDyesqkHRgFgFVefe~aEDAaaAiDNMnesEL~GrtirVN~A 87 (298)
T KOG0111|consen 8 NQKRTLYVGGLADEVTEKVLHAAFIPFGDIKDIQIPLDYESQKHRGFGFVEFEEAEDAAAAIDNMNESELFGRTIRVNLA 87 (298)
T ss_pred ccceeEEeccchHHHHHHHHHhccccccchhhcccccchhcccccceeEEEeeccchhHHHhhcCchhhhcceeEEEeec
Confidence 34789999999999999999999999999999999999899999999999999999999999999999999999999998
Q ss_pred chhH
Q 002335 296 QATR 299 (935)
Q Consensus 296 ~~~~ 299 (935)
...+
T Consensus 88 kP~k 91 (298)
T KOG0111|consen 88 KPEK 91 (298)
T ss_pred CCcc
Confidence 8754
No 46
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.03 E-value=5e-10 Score=116.98 Aligned_cols=79 Identities=24% Similarity=0.394 Sum_probs=73.5
Q ss_pred CCCCCcceeeccCCCCCCHHHHHHHHHhcCCcceeeeeccCCCCCCCceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEE
Q 002335 214 AEKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLK 293 (935)
Q Consensus 214 ~~~~~~tlfVgnLp~~vte~~L~~lFs~~G~V~~vki~~d~~tgk~kgfgFVeF~~~e~A~~Al~~Lng~~i~gr~L~V~ 293 (935)
..+..|+||||||+..+++++|++.|+.||.|..|+|.++ +||+||.|.+.++|..||..|||..|+|..+++.
T Consensus 160 ssp~NtsVY~G~I~~~lte~~mr~~Fs~fG~I~EVRvFk~------qGYaFVrF~tkEaAahAIv~mNntei~G~~VkCs 233 (321)
T KOG0148|consen 160 SSPDNTSVYVGNIASGLTEDLMRQTFSPFGPIQEVRVFKD------QGYAFVRFETKEAAAHAIVQMNNTEIGGQLVRCS 233 (321)
T ss_pred CCCCCceEEeCCcCccccHHHHHHhcccCCcceEEEEecc------cceEEEEecchhhHHHHHHHhcCceeCceEEEEe
Confidence 3466899999999999999999999999999999999998 4999999999999999999999999999999999
Q ss_pred eechh
Q 002335 294 VDQAT 298 (935)
Q Consensus 294 ~a~~~ 298 (935)
|-...
T Consensus 234 WGKe~ 238 (321)
T KOG0148|consen 234 WGKEG 238 (321)
T ss_pred ccccC
Confidence 86553
No 47
>KOG0130 consensus RNA-binding protein RBM8/Tsunagi (RRM superfamily) [General function prediction only]
Probab=99.00 E-value=5.3e-10 Score=105.64 Aligned_cols=82 Identities=17% Similarity=0.205 Sum_probs=78.4
Q ss_pred CCCcceeeccCCCCCCHHHHHHHHHhcCCcceeeeeccCCCCCCCceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEee
Q 002335 216 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVD 295 (935)
Q Consensus 216 ~~~~tlfVgnLp~~vte~~L~~lFs~~G~V~~vki~~d~~tgk~kgfgFVeF~~~e~A~~Al~~Lng~~i~gr~L~V~~a 295 (935)
.....|||.++...+++++|...|+-||.|+++.+..|+.||..+||+.|+|++.+.|..||..|||..|.|..|.|+|+
T Consensus 70 VEGwIi~VtgvHeEatEedi~d~F~dyGeiKNihLNLDRRtGy~KGYaLvEYet~keAq~A~~~~Ng~~ll~q~v~VDw~ 149 (170)
T KOG0130|consen 70 VEGWIIFVTGVHEEATEEDIHDKFADYGEIKNIHLNLDRRTGYVKGYALVEYETLKEAQAAIDALNGAELLGQNVSVDWC 149 (170)
T ss_pred eeeEEEEEeccCcchhHHHHHHHHhhcccccceeeccccccccccceeeeehHhHHHHHHHHHhccchhhhCCceeEEEE
Confidence 34678999999999999999999999999999999999999999999999999999999999999999999999999997
Q ss_pred ch
Q 002335 296 QA 297 (935)
Q Consensus 296 ~~ 297 (935)
--
T Consensus 150 Fv 151 (170)
T KOG0130|consen 150 FV 151 (170)
T ss_pred Ee
Confidence 64
No 48
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=98.97 E-value=5.1e-09 Score=123.90 Aligned_cols=78 Identities=19% Similarity=0.216 Sum_probs=71.6
Q ss_pred CCCCcceeeccCCC-CCCHHHHHHHHHhcCCcceeeeeccCCCCCCCceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEE
Q 002335 215 EKPQTKVYVGKIAP-TADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLK 293 (935)
Q Consensus 215 ~~~~~tlfVgnLp~-~vte~~L~~lFs~~G~V~~vki~~d~~tgk~kgfgFVeF~~~e~A~~Al~~Lng~~i~gr~L~V~ 293 (935)
..+.++|||+||++ .+++++|+.||+.||.|.+|+|+.+. +|||||+|.+.++|..||..|||+.|+|+.|.|.
T Consensus 272 ~~~~~~l~v~nL~~~~vt~~~L~~lF~~yG~V~~vki~~~~-----~g~afV~f~~~~~A~~Ai~~lng~~l~g~~l~v~ 346 (481)
T TIGR01649 272 GGPGSVLMVSGLHQEKVNCDRLFNLFCVYGNVERVKFMKNK-----KETALIEMADPYQAQLALTHLNGVKLFGKPLRVC 346 (481)
T ss_pred CCCCCEEEEeCCCCCCCCHHHHHHHHHhcCCeEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCCEECCceEEEE
Confidence 34578999999998 69999999999999999999998862 5999999999999999999999999999999999
Q ss_pred eech
Q 002335 294 VDQA 297 (935)
Q Consensus 294 ~a~~ 297 (935)
++..
T Consensus 347 ~s~~ 350 (481)
T TIGR01649 347 PSKQ 350 (481)
T ss_pred Eccc
Confidence 8654
No 49
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=98.97 E-value=3.2e-09 Score=90.34 Aligned_cols=74 Identities=27% Similarity=0.486 Sum_probs=68.6
Q ss_pred ceeeccCCCCCCHHHHHHHHHhcCCcceeeeeccCCCCCCCceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEe
Q 002335 220 KVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKV 294 (935)
Q Consensus 220 tlfVgnLp~~vte~~L~~lFs~~G~V~~vki~~d~~tgk~kgfgFVeF~~~e~A~~Al~~Lng~~i~gr~L~V~~ 294 (935)
+|||+||+..+++++|..+|..||.|..+.+..+. .+...|||||+|.+.++|..|+..+++..++|+.|.|.+
T Consensus 1 ~i~i~~l~~~~~~~~i~~~~~~~g~i~~~~~~~~~-~~~~~~~~~v~f~s~~~a~~a~~~~~~~~~~~~~~~v~~ 74 (74)
T cd00590 1 TLFVGNLPPDVTEEDLRELFSKFGKVESVRIVRDK-DTKSKGFAFVEFEDEEDAEKALEALNGKELGGRPLRVEF 74 (74)
T ss_pred CEEEeCCCCccCHHHHHHHHHhcCCEEEEEEeeCC-CCCcceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEeC
Confidence 58999999999999999999999999999998874 447789999999999999999999999999999999864
No 50
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=98.95 E-value=4.2e-10 Score=121.02 Aligned_cols=81 Identities=27% Similarity=0.418 Sum_probs=76.9
Q ss_pred CcceeeccCCCCCCHHHHHHHHHhcCCcceeeeeccCCCCCCCceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEeech
Q 002335 218 QTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVDQA 297 (935)
Q Consensus 218 ~~tlfVgnLp~~vte~~L~~lFs~~G~V~~vki~~d~~tgk~kgfgFVeF~~~e~A~~Al~~Lng~~i~gr~L~V~~a~~ 297 (935)
-|+||||.|.+.+.++.|+..|..||.|+++.+..|+.||+++||+||+|+-++.|.-|++.|||..++||.|+|..-.+
T Consensus 113 McRvYVGSIsfEl~EDtiR~AF~PFGPIKSInMSWDp~T~kHKgFAFVEYEvPEaAqLAlEqMNg~mlGGRNiKVgrPsN 192 (544)
T KOG0124|consen 113 MCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGRPSN 192 (544)
T ss_pred hHheeeeeeEEEechHHHHhhccCCCCcceeecccccccccccceEEEEEeCcHHHHHHHHHhccccccCccccccCCCC
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999986544
Q ss_pred h
Q 002335 298 T 298 (935)
Q Consensus 298 ~ 298 (935)
.
T Consensus 193 m 193 (544)
T KOG0124|consen 193 M 193 (544)
T ss_pred C
Confidence 3
No 51
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=98.95 E-value=6.4e-10 Score=122.50 Aligned_cols=81 Identities=20% Similarity=0.384 Sum_probs=74.7
Q ss_pred CcceeeccCCCCCCHHHHHHHHHhcCCcceeeeeccCCCCCCCceEEEEeCCHHHHHHHHHHhCCce-e--CCeEEEEEe
Q 002335 218 QTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFN-I--DGQELMLKV 294 (935)
Q Consensus 218 ~~tlfVgnLp~~vte~~L~~lFs~~G~V~~vki~~d~~tgk~kgfgFVeF~~~e~A~~Al~~Lng~~-i--~gr~L~V~~ 294 (935)
.+.||||-|+..+++.+++.||++||.|.+|.|.+| ..|.++|||||.|.+.+-|..||+.|||.. + ....|.|+|
T Consensus 124 e~KLFvg~lsK~~te~evr~iFs~fG~Ied~~ilrd-~~~~sRGcaFV~fstke~A~~Aika~ng~~tmeGcs~PLVVkF 202 (510)
T KOG0144|consen 124 ERKLFVGMLSKQCTENEVREIFSRFGHIEDCYILRD-PDGLSRGCAFVKFSTKEMAVAAIKALNGTQTMEGCSQPLVVKF 202 (510)
T ss_pred chhhhhhhccccccHHHHHHHHHhhCccchhhheec-ccccccceeEEEEehHHHHHHHHHhhccceeeccCCCceEEEe
Confidence 678999999999999999999999999999999999 699999999999999999999999999964 3 356799999
Q ss_pred echhH
Q 002335 295 DQATR 299 (935)
Q Consensus 295 a~~~~ 299 (935)
++..+
T Consensus 203 ADtqk 207 (510)
T KOG0144|consen 203 ADTQK 207 (510)
T ss_pred cccCC
Confidence 98764
No 52
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=98.92 E-value=3.5e-09 Score=119.54 Aligned_cols=88 Identities=16% Similarity=0.233 Sum_probs=79.8
Q ss_pred CCCcceeeccCCCCCCHHHHHHHHHhcCCcceeeeeccCCCCCCCceEEEEeCCHHHHHHHHHHh-----CC-ceeCCeE
Q 002335 216 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLL-----NK-FNIDGQE 289 (935)
Q Consensus 216 ~~~~tlfVgnLp~~vte~~L~~lFs~~G~V~~vki~~d~~tgk~kgfgFVeF~~~e~A~~Al~~L-----ng-~~i~gr~ 289 (935)
....||||.||++++++++|...|+.||.|..+.|+.++.||.++|+|||.|.+...+..||... .| +.|+||.
T Consensus 290 ~~~~tVFvRNL~fD~tEEel~~~fskFG~v~ya~iV~~k~T~~skGtAFv~Fkt~~~~~~ci~~Aspa~e~g~~ll~GR~ 369 (678)
T KOG0127|consen 290 TEGKTVFVRNLPFDTTEEELKEHFSKFGEVKYAIIVKDKDTGHSKGTAFVKFKTQIAAQNCIEAASPASEDGSVLLDGRL 369 (678)
T ss_pred cccceEEEecCCccccHHHHHHHHHhhccceeEEEEeccCCCCcccceEEEeccHHHHHHHHHhcCccCCCceEEEeccE
Confidence 34689999999999999999999999999999999999999999999999999999999999876 34 7899999
Q ss_pred EEEEeechhHHHHH
Q 002335 290 LMLKVDQATREYLE 303 (935)
Q Consensus 290 L~V~~a~~~~~~l~ 303 (935)
|.|..+...++...
T Consensus 370 Lkv~~Av~RkeA~d 383 (678)
T KOG0127|consen 370 LKVTLAVTRKEAAD 383 (678)
T ss_pred EeeeeccchHHHHH
Confidence 99999988755433
No 53
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=98.91 E-value=4.4e-09 Score=116.05 Aligned_cols=88 Identities=20% Similarity=0.319 Sum_probs=77.9
Q ss_pred CCCCcceeeccCCCCCCHHHHHHHHHhcCCcceeeeeccCCCCCCCceEEEEeCCHHHHHHHHHHhCCce-eC--CeEEE
Q 002335 215 EKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFN-ID--GQELM 291 (935)
Q Consensus 215 ~~~~~tlfVgnLp~~vte~~L~~lFs~~G~V~~vki~~d~~tgk~kgfgFVeF~~~e~A~~Al~~Lng~~-i~--gr~L~ 291 (935)
+.....+|||.||..+++.+|+.+|.+||.|.+|.|++|+.+|.++|||||.|.+.++|.+|+.+||+.. |- ...|.
T Consensus 31 d~~~vKlfVgqIprt~sE~dlr~lFe~yg~V~einl~kDk~t~~s~gcCFv~~~trk~a~~a~~Alhn~ktlpG~~~pvq 110 (510)
T KOG0144|consen 31 DGSAVKLFVGQIPRTASEKDLRELFEKYGNVYEINLIKDKSTGQSKGCCFVKYYTRKEADEAINALHNQKTLPGMHHPVQ 110 (510)
T ss_pred CchhhhheeccCCccccHHHHHHHHHHhCceeEEEeecccccCcccceEEEEeccHHHHHHHHHHhhcccccCCCCccee
Confidence 4556789999999999999999999999999999999999999999999999999999999999998754 33 45688
Q ss_pred EEeechhHHHH
Q 002335 292 LKVDQATREYL 302 (935)
Q Consensus 292 V~~a~~~~~~l 302 (935)
|++++..++.+
T Consensus 111 vk~Ad~E~er~ 121 (510)
T KOG0144|consen 111 VKYADGERERI 121 (510)
T ss_pred ecccchhhhcc
Confidence 99888765443
No 54
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=98.89 E-value=3.5e-09 Score=125.27 Aligned_cols=76 Identities=18% Similarity=0.182 Sum_probs=69.6
Q ss_pred CCcceeeccCCCCCCHHHHHHHHHhcCCcceeeeeccCCCCCCCceEEEEeCCHHHHHHHHHHh--CCceeCCeEEEEEe
Q 002335 217 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLL--NKFNIDGQELMLKV 294 (935)
Q Consensus 217 ~~~tlfVgnLp~~vte~~L~~lFs~~G~V~~vki~~d~~tgk~kgfgFVeF~~~e~A~~Al~~L--ng~~i~gr~L~V~~ 294 (935)
++++|||+||++.+++.+|+.+|+.||.|.+|.++++ ++||||+|.+.++|.+||..| ++..|+|+.|.|.|
T Consensus 1 ps~vv~V~nLp~~~te~~L~~~f~~fG~V~~v~i~~~------k~~afVef~~~e~A~~Ai~~~~~~~~~l~g~~l~v~~ 74 (481)
T TIGR01649 1 PSPVVHVRNLPQDVVEADLVEALIPFGPVSYVMMLPG------KRQALVEFEDEESAKACVNFATSVPIYIRGQPAFFNY 74 (481)
T ss_pred CccEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEECC------CCEEEEEeCchHHHHHHHHHhhcCCceEcCeEEEEEe
Confidence 3689999999999999999999999999999999865 489999999999999999864 78999999999999
Q ss_pred echh
Q 002335 295 DQAT 298 (935)
Q Consensus 295 a~~~ 298 (935)
+...
T Consensus 75 s~~~ 78 (481)
T TIGR01649 75 STSQ 78 (481)
T ss_pred cCCc
Confidence 8653
No 55
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=98.89 E-value=3.6e-09 Score=125.57 Aligned_cols=73 Identities=21% Similarity=0.424 Sum_probs=68.4
Q ss_pred CcceeeccCCCCCCHHHHHHHHHhc--CCcceeeeeccCCCCCCCceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEee
Q 002335 218 QTKVYVGKIAPTADSDFVLSVLKVC--GTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVD 295 (935)
Q Consensus 218 ~~tlfVgnLp~~vte~~L~~lFs~~--G~V~~vki~~d~~tgk~kgfgFVeF~~~e~A~~Al~~Lng~~i~gr~L~V~~a 295 (935)
.++|||+||++.+++++|+.+|+.| |.|..|++++ +||||+|.+.++|.+||..|||..|+|+.|.|.|+
T Consensus 233 ~k~LfVgNL~~~~tee~L~~~F~~f~~G~I~rV~~~r--------gfAFVeF~s~e~A~kAi~~lnG~~i~Gr~I~V~~A 304 (578)
T TIGR01648 233 VKILYVRNLMTTTTEEIIEKSFSEFKPGKVERVKKIR--------DYAFVHFEDREDAVKAMDELNGKELEGSEIEVTLA 304 (578)
T ss_pred ccEEEEeCCCCCCCHHHHHHHHHhcCCCceEEEEeec--------CeEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEc
Confidence 5789999999999999999999999 9999998764 59999999999999999999999999999999998
Q ss_pred chh
Q 002335 296 QAT 298 (935)
Q Consensus 296 ~~~ 298 (935)
...
T Consensus 305 kp~ 307 (578)
T TIGR01648 305 KPV 307 (578)
T ss_pred cCC
Confidence 653
No 56
>KOG0226 consensus RNA-binding proteins [General function prediction only]
Probab=98.86 E-value=4.9e-08 Score=101.64 Aligned_cols=84 Identities=18% Similarity=0.383 Sum_probs=77.3
Q ss_pred CCCCCCcceeeccCCCCCCHHHHHHHHHhcCCcceeeeeccCCCCCCCceEEEEeCCHHHHHHHHHHhCCceeCCeEEEE
Q 002335 213 PAEKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELML 292 (935)
Q Consensus 213 p~~~~~~tlfVgnLp~~vte~~L~~lFs~~G~V~~vki~~d~~tgk~kgfgFVeF~~~e~A~~Al~~Lng~~i~gr~L~V 292 (935)
.+......||.|.|...++++.|...|.+|-.....+++++..||+++|||||.|.+..++.+|++.|||..++.+.|++
T Consensus 185 ew~~~DfRIfcgdlgNevnd~vl~raf~Kfpsf~~akviRdkRTgKSkgygfVSf~~pad~~rAmrem~gkyVgsrpikl 264 (290)
T KOG0226|consen 185 EWDEDDFRIFCGDLGNEVNDDVLARAFKKFPSFQKAKVIRDKRTGKSKGYGFVSFRDPADYVRAMREMNGKYVGSRPIKL 264 (290)
T ss_pred cCccccceeecccccccccHHHHHHHHHhccchhhccccccccccccccceeeeecCHHHHHHHHHhhcccccccchhHh
Confidence 35556789999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred Eeec
Q 002335 293 KVDQ 296 (935)
Q Consensus 293 ~~a~ 296 (935)
.-..
T Consensus 265 RkS~ 268 (290)
T KOG0226|consen 265 RKSE 268 (290)
T ss_pred hhhh
Confidence 5333
No 57
>smart00361 RRM_1 RNA recognition motif.
Probab=98.86 E-value=7.9e-09 Score=89.68 Aligned_cols=61 Identities=20% Similarity=0.169 Sum_probs=54.9
Q ss_pred HHHHHHHHH----hcCCcceee-eeccCCC--CCCCceEEEEeCCHHHHHHHHHHhCCceeCCeEEEE
Q 002335 232 SDFVLSVLK----VCGTVKSWK-RAQYPSN--GTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELML 292 (935)
Q Consensus 232 e~~L~~lFs----~~G~V~~vk-i~~d~~t--gk~kgfgFVeF~~~e~A~~Al~~Lng~~i~gr~L~V 292 (935)
+++|+.+|+ .||.|.++. ++.++.+ |.++|||||+|.+.++|..|+..|||..|+|+.|.+
T Consensus 2 ~~~l~~~~~~~~~~fG~v~~v~~v~~~~~~~~~~~rG~~fV~f~~~~dA~~A~~~l~g~~~~gr~l~~ 69 (70)
T smart00361 2 DEDFEREFSEEEEYFGEVGKINKIYIDNVGYENHKRGNVYITFERSEDAARAIVDLNGRYFDGRTVKA 69 (70)
T ss_pred chhHHHHHHHHHHhcCCeeEEEEEEeCCCCCCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEe
Confidence 467888888 999999995 6666556 999999999999999999999999999999999976
No 58
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=98.86 E-value=3.1e-09 Score=105.43 Aligned_cols=80 Identities=18% Similarity=0.338 Sum_probs=72.2
Q ss_pred CCCcceeeccCCCCCCHHHHHHHHHhcCCcceeeeeccCCCCCCCceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEee
Q 002335 216 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVD 295 (935)
Q Consensus 216 ~~~~tlfVgnLp~~vte~~L~~lFs~~G~V~~vki~~d~~tgk~kgfgFVeF~~~e~A~~Al~~Lng~~i~gr~L~V~~a 295 (935)
...++|||||||..+.+.+|..||.+||.|..|.+... ....+||||+|++..+|+-||..-+|+.++|..|+|.|.
T Consensus 4 r~~~~iyvGNLP~diRekeieDlFyKyg~i~~ieLK~r---~g~ppfafVeFEd~RDAeDAiygRdGYdydg~rLRVEfp 80 (241)
T KOG0105|consen 4 RNSRRIYVGNLPGDIREKEIEDLFYKYGRIREIELKNR---PGPPPFAFVEFEDPRDAEDAIYGRDGYDYDGCRLRVEFP 80 (241)
T ss_pred cccceEEecCCCcchhhccHHHHHhhhcceEEEEeccC---CCCCCeeEEEecCccchhhhhhcccccccCcceEEEEec
Confidence 34689999999999999999999999999999987543 344689999999999999999999999999999999998
Q ss_pred chh
Q 002335 296 QAT 298 (935)
Q Consensus 296 ~~~ 298 (935)
...
T Consensus 81 rgg 83 (241)
T KOG0105|consen 81 RGG 83 (241)
T ss_pred cCC
Confidence 775
No 59
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=98.84 E-value=1.2e-08 Score=84.32 Aligned_cols=56 Identities=29% Similarity=0.452 Sum_probs=51.0
Q ss_pred HHHHHHhcCCcceeeeeccCCCCCCCceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEee
Q 002335 235 VLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVD 295 (935)
Q Consensus 235 L~~lFs~~G~V~~vki~~d~~tgk~kgfgFVeF~~~e~A~~Al~~Lng~~i~gr~L~V~~a 295 (935)
|..+|++||.|..+.+..+. +++|||+|.+.++|..|+..|||..|+|+.|.|.|+
T Consensus 1 L~~~f~~fG~V~~i~~~~~~-----~~~a~V~f~~~~~A~~a~~~l~~~~~~g~~l~V~~a 56 (56)
T PF13893_consen 1 LYKLFSKFGEVKKIKIFKKK-----RGFAFVEFASVEDAQKAIEQLNGRQFNGRPLKVSYA 56 (56)
T ss_dssp HHHHHTTTS-EEEEEEETTS-----TTEEEEEESSHHHHHHHHHHHTTSEETTEEEEEEEE
T ss_pred ChHHhCCcccEEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEC
Confidence 67899999999999997752 699999999999999999999999999999999985
No 60
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=98.82 E-value=4e-09 Score=119.98 Aligned_cols=80 Identities=25% Similarity=0.485 Sum_probs=74.8
Q ss_pred CcceeeccCCCCCCHHHHHHHHHhcCCcceeeeeccCCCCCCCceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEeech
Q 002335 218 QTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVDQA 297 (935)
Q Consensus 218 ~~tlfVgnLp~~vte~~L~~lFs~~G~V~~vki~~d~~tgk~kgfgFVeF~~~e~A~~Al~~Lng~~i~gr~L~V~~a~~ 297 (935)
...||||||.+++++++|+.||..||.|..|.+..|..||.++|||||+|.+.+.|.+|+..|||++|-|+.|+|.+-..
T Consensus 278 ~~rl~vgnLHfNite~~lr~ifepfg~Ie~v~l~~d~~tG~skgfGfi~f~~~~~ar~a~e~lngfelAGr~ikV~~v~~ 357 (549)
T KOG0147|consen 278 MRRLYVGNLHFNITEDMLRGIFEPFGKIENVQLTKDSETGRSKGFGFITFVNKEDARKALEQLNGFELAGRLIKVSVVTE 357 (549)
T ss_pred hhhhhhcccccCchHHHHhhhccCcccceeeeeccccccccccCcceEEEecHHHHHHHHHHhccceecCceEEEEEeee
Confidence 34499999999999999999999999999999999977999999999999999999999999999999999999976443
No 61
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=98.81 E-value=4.3e-09 Score=111.06 Aligned_cols=72 Identities=18% Similarity=0.402 Sum_probs=67.3
Q ss_pred cceeeccCCCCCCHHHHHHHHHhcCCcceeeeeccCCCCCCCceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEeechh
Q 002335 219 TKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVDQAT 298 (935)
Q Consensus 219 ~tlfVgnLp~~vte~~L~~lFs~~G~V~~vki~~d~~tgk~kgfgFVeF~~~e~A~~Al~~Lng~~i~gr~L~V~~a~~~ 298 (935)
-.|||||||..+++.+|+.||..||+|..|.||++ ||||-.++...+.-||+.|||+.|+|..|.|+-+.++
T Consensus 3 ~KLFIGNLp~~~~~~elr~lFe~ygkVlECDIvKN--------YgFVHiEdktaaedairNLhgYtLhg~nInVeaSksK 74 (346)
T KOG0109|consen 3 VKLFIGNLPREATEQELRSLFEQYGKVLECDIVKN--------YGFVHIEDKTAAEDAIRNLHGYTLHGVNINVEASKSK 74 (346)
T ss_pred cchhccCCCcccchHHHHHHHHhhCceEeeeeecc--------cceEEeecccccHHHHhhcccceecceEEEEEecccc
Confidence 46999999999999999999999999999999985 9999999999999999999999999999999765553
No 62
>KOG4208 consensus Nucleolar RNA-binding protein NIFK [General function prediction only]
Probab=98.79 E-value=1.1e-08 Score=103.90 Aligned_cols=84 Identities=25% Similarity=0.334 Sum_probs=76.0
Q ss_pred CCCCcceeeccCCCCCCHHHHHHHHHhc-CCcceeeeeccCCCCCCCceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEE
Q 002335 215 EKPQTKVYVGKIAPTADSDFVLSVLKVC-GTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLK 293 (935)
Q Consensus 215 ~~~~~tlfVgnLp~~vte~~L~~lFs~~-G~V~~vki~~d~~tgk~kgfgFVeF~~~e~A~~Al~~Lng~~i~gr~L~V~ 293 (935)
......+||+.|+..+.+..|..+|..| |.|..+++.+++.||.++|||||+|++.+-|.-|...||++.|.|+-|.|.
T Consensus 46 ~~~~g~~~~~~~p~g~~e~~~~~~~~q~~g~v~r~rlsRnkrTGNSKgYAFVEFEs~eVA~IaAETMNNYLl~e~lL~c~ 125 (214)
T KOG4208|consen 46 QEIEGVVYVDHIPHGFFETEILNYFRQFGGTVTRFRLSRNKRTGNSKGYAFVEFESEEVAKIAAETMNNYLLMEHLLECH 125 (214)
T ss_pred cCCccceeecccccchhHHHHhhhhhhcCCeeEEEEeecccccCCcCceEEEEeccHHHHHHHHHHhhhhhhhhheeeeE
Confidence 3446779999999999999999999988 677788888999999999999999999999999999999999999999998
Q ss_pred eechh
Q 002335 294 VDQAT 298 (935)
Q Consensus 294 ~a~~~ 298 (935)
|=-..
T Consensus 126 vmppe 130 (214)
T KOG4208|consen 126 VMPPE 130 (214)
T ss_pred EeCch
Confidence 86654
No 63
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=98.77 E-value=8e-09 Score=111.36 Aligned_cols=97 Identities=26% Similarity=0.458 Sum_probs=86.7
Q ss_pred CCCCCCCCCCCCC-------CCCCCcceeeccCCCCCCHHHHHHHHHhcCCcceeeeeccCCCCCCCceEEEEeCCHHHH
Q 002335 201 PVVRPVPLPTVTP-------AEKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGV 273 (935)
Q Consensus 201 p~~~P~~~p~~~p-------~~~~~~tlfVgnLp~~vte~~L~~lFs~~G~V~~vki~~d~~tgk~kgfgFVeF~~~e~A 273 (935)
..++|.+++++.+ ......+|||..+.++.++.+|+.+|..||.|+.|.+.+++.+++++||||++|.+..+.
T Consensus 186 KVgrPsNmpQAQpiID~vqeeAk~fnRiYVaSvHpDLSe~DiKSVFEAFG~I~~C~LAr~pt~~~HkGyGfiEy~n~qs~ 265 (544)
T KOG0124|consen 186 KVGRPSNMPQAQPIIDMVQEEAKKFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQ 265 (544)
T ss_pred cccCCCCCcccchHHHHHHHHHHhhheEEeeecCCCccHHHHHHHHHhhcceeeEEeeccCCCCCccceeeEEeccccch
Confidence 4567777777665 345688999999999999999999999999999999999998999999999999999999
Q ss_pred HHHHHHhCCceeCCeEEEEEeech
Q 002335 274 LRALRLLNKFNIDGQELMLKVDQA 297 (935)
Q Consensus 274 ~~Al~~Lng~~i~gr~L~V~~a~~ 297 (935)
..||..||-+.++|.-|+|..+..
T Consensus 266 ~eAiasMNlFDLGGQyLRVGk~vT 289 (544)
T KOG0124|consen 266 SEAIASMNLFDLGGQYLRVGKCVT 289 (544)
T ss_pred HHHhhhcchhhcccceEecccccC
Confidence 999999999999999999975443
No 64
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=98.75 E-value=1.6e-08 Score=120.50 Aligned_cols=79 Identities=20% Similarity=0.268 Sum_probs=61.6
Q ss_pred CCCCcceeeccCCCCCCHHHHHHHHHhcCCcce------eeeeccCCCCCCCceEEEEeCCHHHHHHHHHHhCCceeCCe
Q 002335 215 EKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKS------WKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQ 288 (935)
Q Consensus 215 ~~~~~tlfVgnLp~~vte~~L~~lFs~~G~V~~------vki~~d~~tgk~kgfgFVeF~~~e~A~~Al~~Lng~~i~gr 288 (935)
....++||||||++.+++.+|..+|..|+.+.. +.++.+...++.+|||||+|.+.++|..||. |||+.|.|+
T Consensus 172 ~~~~r~lyVgnLp~~~t~~~l~~~F~~~~~~~~~~~~~~~~~v~~~~~~~~kg~afVeF~~~e~A~~Al~-l~g~~~~g~ 250 (509)
T TIGR01642 172 TRQARRLYVGGIPPEFVEEAVVDFFNDLMIATGYHKAEDGKHVSSVNINKEKNFAFLEFRTVEEATFAMA-LDSIIYSNV 250 (509)
T ss_pred CccccEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCCceEEEEECCCCCEEEEEeCCHHHHhhhhc-CCCeEeeCc
Confidence 455789999999999999999999997622111 1111221234567999999999999999995 999999999
Q ss_pred EEEEEe
Q 002335 289 ELMLKV 294 (935)
Q Consensus 289 ~L~V~~ 294 (935)
.|.|..
T Consensus 251 ~l~v~r 256 (509)
T TIGR01642 251 FLKIRR 256 (509)
T ss_pred eeEecC
Confidence 999864
No 65
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=98.75 E-value=1.4e-08 Score=101.12 Aligned_cols=81 Identities=23% Similarity=0.417 Sum_probs=75.3
Q ss_pred CCcceeeccCCCCCCHHHHHHHHHhcCCccee-eeeccCCCCCCCceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEee
Q 002335 217 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKSW-KRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVD 295 (935)
Q Consensus 217 ~~~tlfVgnLp~~vte~~L~~lFs~~G~V~~v-ki~~d~~tgk~kgfgFVeF~~~e~A~~Al~~Lng~~i~gr~L~V~~a 295 (935)
...+||||||.+.+++..|..+|+.||.+... +++++..||.++|||||.|.+.+.+.+||..|||..++.+.|.|.++
T Consensus 95 vganlfvgNLd~~vDe~~L~dtFsafG~l~~~P~i~rd~~tg~~~~~g~i~~~sfeasd~ai~s~ngq~l~nr~itv~ya 174 (203)
T KOG0131|consen 95 VGANLFVGNLDPEVDEKLLYDTFSAFGVLISPPKIMRDPDTGNPKGFGFINYASFEASDAAIGSMNGQYLCNRPITVSYA 174 (203)
T ss_pred ccccccccccCcchhHHHHHHHHHhccccccCCcccccccCCCCCCCeEEechhHHHHHHHHHHhccchhcCCceEEEEE
Confidence 35789999999999999999999999998774 78888889999999999999999999999999999999999999987
Q ss_pred ch
Q 002335 296 QA 297 (935)
Q Consensus 296 ~~ 297 (935)
..
T Consensus 175 ~k 176 (203)
T KOG0131|consen 175 FK 176 (203)
T ss_pred Ee
Confidence 65
No 66
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=98.72 E-value=1.6e-08 Score=112.13 Aligned_cols=73 Identities=16% Similarity=0.371 Sum_probs=69.3
Q ss_pred CcceeeccCCCCCCHHHHHHHHHhcCCcceeeeeccCCCCCCCceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEeech
Q 002335 218 QTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVDQA 297 (935)
Q Consensus 218 ~~tlfVgnLp~~vte~~L~~lFs~~G~V~~vki~~d~~tgk~kgfgFVeF~~~e~A~~Al~~Lng~~i~gr~L~V~~a~~ 297 (935)
...|||.||+..+|++.|+.+|+.||.|..|+.++| ||||-|.+.++|.+|+..|||.+|+|..|-|.++..
T Consensus 259 VKvLYVRNL~~~tTeE~lk~~F~~~G~veRVkk~rD--------YaFVHf~eR~davkAm~~~ngkeldG~~iEvtLAKP 330 (506)
T KOG0117|consen 259 VKVLYVRNLMESTTEETLKKLFNEFGKVERVKKPRD--------YAFVHFAEREDAVKAMKETNGKELDGSPIEVTLAKP 330 (506)
T ss_pred eeeeeeeccchhhhHHHHHHHHHhccceEEeecccc--------eeEEeecchHHHHHHHHHhcCceecCceEEEEecCC
Confidence 578999999999999999999999999999998865 999999999999999999999999999999999887
Q ss_pred h
Q 002335 298 T 298 (935)
Q Consensus 298 ~ 298 (935)
-
T Consensus 331 ~ 331 (506)
T KOG0117|consen 331 V 331 (506)
T ss_pred h
Confidence 4
No 67
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=98.65 E-value=3.3e-07 Score=107.28 Aligned_cols=17 Identities=12% Similarity=0.311 Sum_probs=10.1
Q ss_pred CCCCCCCCCCcceeecc
Q 002335 209 PTVTPAEKPQTKVYVGK 225 (935)
Q Consensus 209 p~~~p~~~~~~tlfVgn 225 (935)
....+.+-...+.||+-
T Consensus 632 ~kI~p~d~s~~cFWvkv 648 (1102)
T KOG1924|consen 632 SKIVPRDLSENCFWVKV 648 (1102)
T ss_pred cccCccccCccceeeec
Confidence 33445555667778773
No 68
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=98.61 E-value=3.7e-08 Score=104.16 Aligned_cols=76 Identities=24% Similarity=0.432 Sum_probs=71.8
Q ss_pred CCCCcceeeccCCCCCCHHHHHHHHHhcCCcceeeeeccCCCCCCCceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEe
Q 002335 215 EKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKV 294 (935)
Q Consensus 215 ~~~~~tlfVgnLp~~vte~~L~~lFs~~G~V~~vki~~d~~tgk~kgfgFVeF~~~e~A~~Al~~Lng~~i~gr~L~V~~ 294 (935)
....++||||||.+.|+..+|+..|..||.|+.|+|++| |+||.|.-.++|..|++.|||.+|+|+.++|.+
T Consensus 75 sk~stkl~vgNis~tctn~ElRa~fe~ygpviecdivkd--------y~fvh~d~~eda~~air~l~~~~~~gk~m~vq~ 146 (346)
T KOG0109|consen 75 SKASTKLHVGNISPTCTNQELRAKFEKYGPVIECDIVKD--------YAFVHFDRAEDAVEAIRGLDNTEFQGKRMHVQL 146 (346)
T ss_pred CCCccccccCCCCccccCHHHhhhhcccCCceeeeeecc--------eeEEEEeeccchHHHHhcccccccccceeeeee
Confidence 456789999999999999999999999999999999985 999999999999999999999999999999998
Q ss_pred echh
Q 002335 295 DQAT 298 (935)
Q Consensus 295 a~~~ 298 (935)
+.+.
T Consensus 147 stsr 150 (346)
T KOG0109|consen 147 STSR 150 (346)
T ss_pred eccc
Confidence 8765
No 69
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=98.58 E-value=8.4e-08 Score=99.06 Aligned_cols=84 Identities=15% Similarity=0.319 Sum_probs=76.8
Q ss_pred CcceeeccCCCCCCHHHHHH----HHHhcCCcceeeeeccCCCCCCCceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEE
Q 002335 218 QTKVYVGKIAPTADSDFVLS----VLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLK 293 (935)
Q Consensus 218 ~~tlfVgnLp~~vte~~L~~----lFs~~G~V~~vki~~d~~tgk~kgfgFVeF~~~e~A~~Al~~Lng~~i~gr~L~V~ 293 (935)
..||||.||+..+.-++|+. ||+.||.|+.|...+ +.+.+|-|||.|.+.+.|..|++.|+|+.|-|+.++|.
T Consensus 9 n~TlYInnLnekI~~~elkrsL~~LFsqfG~ildI~a~k---t~KmRGQA~VvFk~~~~As~A~r~l~gfpFygK~mriq 85 (221)
T KOG4206|consen 9 NGTLYINNLNEKIKKDELKRSLYLLFSQFGKILDISAFK---TPKMRGQAFVVFKETEAASAALRALQGFPFYGKPMRIQ 85 (221)
T ss_pred CceEeehhccccccHHHHHHHHHHHHHhhCCeEEEEecC---CCCccCceEEEecChhHHHHHHHHhcCCcccCchhhee
Confidence 44999999999999998888 999999999887654 78999999999999999999999999999999999999
Q ss_pred eechhHHHHHH
Q 002335 294 VDQATREYLER 304 (935)
Q Consensus 294 ~a~~~~~~l~~ 304 (935)
++....+.+..
T Consensus 86 yA~s~sdii~~ 96 (221)
T KOG4206|consen 86 YAKSDSDIIAQ 96 (221)
T ss_pred cccCccchhhc
Confidence 99988776655
No 70
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=98.58 E-value=1e-07 Score=108.40 Aligned_cols=75 Identities=25% Similarity=0.472 Sum_probs=71.2
Q ss_pred eeeccCCCCCCHHHHHHHHHhcCCcceeeeeccCCCCCCCceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEeechh
Q 002335 221 VYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVDQAT 298 (935)
Q Consensus 221 lfVgnLp~~vte~~L~~lFs~~G~V~~vki~~d~~tgk~kgfgFVeF~~~e~A~~Al~~Lng~~i~gr~L~V~~a~~~ 298 (935)
|||.||+..++...|..+|+.||.|++|++.++ .+| ++|| ||.|.+.++|.+||..|||..+.|+.|.|......
T Consensus 79 ~~i~nl~~~~~~~~~~d~f~~~g~ilS~kv~~~-~~g-~kg~-FV~f~~e~~a~~ai~~~ng~ll~~kki~vg~~~~~ 153 (369)
T KOG0123|consen 79 VFIKNLDESIDNKSLYDTFSEFGNILSCKVATD-ENG-SKGY-FVQFESEESAKKAIEKLNGMLLNGKKIYVGLFERK 153 (369)
T ss_pred eeecCCCcccCcHHHHHHHHhhcCeeEEEEEEc-CCC-ceee-EEEeCCHHHHHHHHHHhcCcccCCCeeEEeeccch
Confidence 999999999999999999999999999999998 466 9999 99999999999999999999999999999887764
No 71
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=98.54 E-value=1.1e-07 Score=111.74 Aligned_cols=76 Identities=13% Similarity=0.244 Sum_probs=72.0
Q ss_pred CcceeeccCCCCCCHHHHHHHHHhcCCcceeeeeccCCCCCCCceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEeech
Q 002335 218 QTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVDQA 297 (935)
Q Consensus 218 ~~tlfVgnLp~~vte~~L~~lFs~~G~V~~vki~~d~~tgk~kgfgFVeF~~~e~A~~Al~~Lng~~i~gr~L~V~~a~~ 297 (935)
++|||||+|+..+++.+|..+|..||.|.+|.++.. +|||||.+....+|.+||..|+.+.|.++.|+|.|+..
T Consensus 421 SrTLwvG~i~k~v~e~dL~~~feefGeiqSi~li~~------R~cAfI~M~~RqdA~kalqkl~n~kv~~k~Iki~Wa~g 494 (894)
T KOG0132|consen 421 SRTLWVGGIPKNVTEQDLANLFEEFGEIQSIILIPP------RGCAFIKMVRRQDAEKALQKLSNVKVADKTIKIAWAVG 494 (894)
T ss_pred eeeeeeccccchhhHHHHHHHHHhcccceeEeeccC------CceeEEEEeehhHHHHHHHHHhcccccceeeEEeeecc
Confidence 689999999999999999999999999999999876 49999999999999999999999999999999999887
Q ss_pred hH
Q 002335 298 TR 299 (935)
Q Consensus 298 ~~ 299 (935)
.-
T Consensus 495 ~G 496 (894)
T KOG0132|consen 495 KG 496 (894)
T ss_pred CC
Confidence 53
No 72
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=98.52 E-value=1.8e-07 Score=103.22 Aligned_cols=80 Identities=25% Similarity=0.410 Sum_probs=74.3
Q ss_pred CCcceeeccCCCCCCHHHHHHHHH-hcCCcceeeeeccCCCCCCCceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEee
Q 002335 217 PQTKVYVGKIAPTADSDFVLSVLK-VCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVD 295 (935)
Q Consensus 217 ~~~tlfVgnLp~~vte~~L~~lFs-~~G~V~~vki~~d~~tgk~kgfgFVeF~~~e~A~~Al~~Lng~~i~gr~L~V~~a 295 (935)
..+.+||.|||+++...+|+.||. +.|.|..|.+..| .+||.+|||.|+|.+.+.+++|++.||.+.+.||.|.|+-+
T Consensus 43 r~R~vfItNIpyd~rWqdLKdLvrekvGev~yveLl~D-~~GK~rGcavVEFk~~E~~qKa~E~lnk~~~~GR~l~vKEd 121 (608)
T KOG4212|consen 43 RDRSVFITNIPYDYRWQDLKDLVREKVGEVEYVELLFD-ESGKARGCAVVEFKDPENVQKALEKLNKYEVNGRELVVKED 121 (608)
T ss_pred ccceEEEecCcchhhhHhHHHHHHHhcCceEeeeeecc-cCCCcCCceEEEeeCHHHHHHHHHHhhhccccCceEEEecc
Confidence 356799999999999999999997 7899999999999 69999999999999999999999999999999999999755
Q ss_pred ch
Q 002335 296 QA 297 (935)
Q Consensus 296 ~~ 297 (935)
..
T Consensus 122 ~d 123 (608)
T KOG4212|consen 122 HD 123 (608)
T ss_pred Cc
Confidence 44
No 73
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=98.51 E-value=2.7e-07 Score=96.33 Aligned_cols=84 Identities=20% Similarity=0.332 Sum_probs=75.6
Q ss_pred CCcceeeccCCCCCCHHHHHHHHHhcCCcceeeeeccCCCCCCCceEEEEeCCHHHHHHHHHHhCCceeC---CeEEEEE
Q 002335 217 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNID---GQELMLK 293 (935)
Q Consensus 217 ~~~tlfVgnLp~~vte~~L~~lFs~~G~V~~vki~~d~~tgk~kgfgFVeF~~~e~A~~Al~~Lng~~i~---gr~L~V~ 293 (935)
..+.||||-|...-++++++.+|..||.|.+|.+.+. .+|.++||+||.|.+..+|..||..|+|..-. ...|.|+
T Consensus 18 ~drklfvgml~kqq~e~dvrrlf~pfG~~~e~tvlrg-~dg~sKGCAFVKf~s~~eAqaAI~aLHgSqTmpGASSSLVVK 96 (371)
T KOG0146|consen 18 DDRKLFVGMLNKQQSEDDVRRLFQPFGNIEECTVLRG-PDGNSKGCAFVKFSSHAEAQAAINALHGSQTMPGASSSLVVK 96 (371)
T ss_pred cchhhhhhhhcccccHHHHHHHhcccCCcceeEEecC-CCCCCCCceEEEeccchHHHHHHHHhcccccCCCCccceEEE
Confidence 5789999999999999999999999999999999998 59999999999999999999999999996543 4579999
Q ss_pred eechhHHH
Q 002335 294 VDQATREY 301 (935)
Q Consensus 294 ~a~~~~~~ 301 (935)
|++..++.
T Consensus 97 ~ADTdkER 104 (371)
T KOG0146|consen 97 FADTDKER 104 (371)
T ss_pred eccchHHH
Confidence 98876543
No 74
>KOG0153 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.44 E-value=3.7e-07 Score=98.97 Aligned_cols=79 Identities=22% Similarity=0.365 Sum_probs=71.2
Q ss_pred CCCCCCcceeeccCCCCCCHHHHHHHHHhcCCcceeeeeccCCCCCCCceEEEEeCCHHHHHHHH-HHhCCceeCCeEEE
Q 002335 213 PAEKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRAL-RLLNKFNIDGQELM 291 (935)
Q Consensus 213 p~~~~~~tlfVgnLp~~vte~~L~~lFs~~G~V~~vki~~d~~tgk~kgfgFVeF~~~e~A~~Al-~~Lng~~i~gr~L~ 291 (935)
+.+...++||||+|-..+++.+|+..|-+||.|.++.++.. ++||||+|.+..+|+.|. +.+|.+.|+|++|.
T Consensus 223 PeD~~I~tLyIg~l~d~v~e~dIrdhFyqyGeirsi~~~~~------~~CAFv~ftTR~aAE~Aae~~~n~lvI~G~Rl~ 296 (377)
T KOG0153|consen 223 PEDTSIKTLYIGGLNDEVLEQDIRDHFYQYGEIRSIRILPR------KGCAFVTFTTREAAEKAAEKSFNKLVINGFRLK 296 (377)
T ss_pred CcccceeEEEecccccchhHHHHHHHHhhcCCeeeEEeecc------cccceeeehhhHHHHHHHHhhcceeeecceEEE
Confidence 35566789999999999999999999999999999999876 379999999999999777 57788999999999
Q ss_pred EEeech
Q 002335 292 LKVDQA 297 (935)
Q Consensus 292 V~~a~~ 297 (935)
|.|...
T Consensus 297 i~Wg~~ 302 (377)
T KOG0153|consen 297 IKWGRP 302 (377)
T ss_pred EEeCCC
Confidence 999876
No 75
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=98.42 E-value=1.3e-06 Score=102.42 Aligned_cols=17 Identities=12% Similarity=0.286 Sum_probs=7.0
Q ss_pred EEEEeechhHHHHHHHH
Q 002335 290 LMLKVDQATREYLERYV 306 (935)
Q Consensus 290 L~V~~a~~~~~~l~~~k 306 (935)
|.|+-+.-+..+|.++.
T Consensus 723 Levne~vLse~~iqnLi 739 (1102)
T KOG1924|consen 723 LEVNEDVLSESMIQNLI 739 (1102)
T ss_pred hhccHHHHHHHHHHHHH
Confidence 44443333334444443
No 76
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=98.41 E-value=1.4e-07 Score=104.04 Aligned_cols=82 Identities=23% Similarity=0.416 Sum_probs=75.5
Q ss_pred CCcceeeccCCCCCCHHHHHHHHHhcCCcceeeeeccCCCCCCCceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEeec
Q 002335 217 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVDQ 296 (935)
Q Consensus 217 ~~~tlfVgnLp~~vte~~L~~lFs~~G~V~~vki~~d~~tgk~kgfgFVeF~~~e~A~~Al~~Lng~~i~gr~L~V~~a~ 296 (935)
..++||||+|+|.++++.|+..|+.||.|..|.+++|+.++.++|||||+|.+.+.+..+|.. .-+.|+|+.|-++.+.
T Consensus 5 ~~~KlfiGgisw~ttee~Lr~yf~~~Gev~d~~vm~d~~t~rsrgFgfv~f~~~~~v~~vl~~-~~h~~dgr~ve~k~av 83 (311)
T KOG4205|consen 5 ESGKLFIGGLSWETTEESLREYFSQFGEVTDCVVMRDPSTGRSRGFGFVTFATPEGVDAVLNA-RTHKLDGRSVEPKRAV 83 (311)
T ss_pred CCcceeecCcCccccHHHHHHHhcccCceeeEEEeccCCCCCcccccceecCCCcchheeecc-cccccCCccccceecc
Confidence 578999999999999999999999999999999999999999999999999999999988874 6688999999888777
Q ss_pred hhH
Q 002335 297 ATR 299 (935)
Q Consensus 297 ~~~ 299 (935)
...
T Consensus 84 ~r~ 86 (311)
T KOG4205|consen 84 SRE 86 (311)
T ss_pred Ccc
Confidence 753
No 77
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.41 E-value=4.8e-07 Score=105.89 Aligned_cols=78 Identities=28% Similarity=0.420 Sum_probs=70.2
Q ss_pred CcceeeccCCCCCCHHHHHHHHHhcCCcceeeeeccCCCC----CCCceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEE
Q 002335 218 QTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNG----TPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLK 293 (935)
Q Consensus 218 ~~tlfVgnLp~~vte~~L~~lFs~~G~V~~vki~~d~~tg----k~kgfgFVeF~~~e~A~~Al~~Lng~~i~gr~L~V~ 293 (935)
.++|||.||++.++...|..+|..+|.|+++.|...+ ++ .+.|||||+|.+.++|.+|++.|+|+.|+|+.|.|.
T Consensus 515 ~t~lfvkNlnf~Tt~e~l~~~F~k~G~VlS~~I~kkk-d~~~k~lSmGfgFVEF~~~e~A~~a~k~lqgtvldGH~l~lk 593 (725)
T KOG0110|consen 515 ETKLFVKNLNFDTTLEDLEDLFSKQGTVLSIEISKKK-DPANKYLSMGFGFVEFAKPESAQAALKALQGTVLDGHKLELK 593 (725)
T ss_pred chhhhhhcCCcccchhHHHHHHHhcCeEEEEEEeccc-cccccccccceeEEEecCHHHHHHHHHHhcCceecCceEEEE
Confidence 3449999999999999999999999999999887754 33 245999999999999999999999999999999999
Q ss_pred eec
Q 002335 294 VDQ 296 (935)
Q Consensus 294 ~a~ 296 (935)
++.
T Consensus 594 ~S~ 596 (725)
T KOG0110|consen 594 ISE 596 (725)
T ss_pred ecc
Confidence 877
No 78
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.39 E-value=2.7e-07 Score=107.97 Aligned_cols=90 Identities=23% Similarity=0.365 Sum_probs=79.6
Q ss_pred CCcceeeccCCCCCCHHHHHHHHHhcCCcceeeeeccCCCCCCCceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEeec
Q 002335 217 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVDQ 296 (935)
Q Consensus 217 ~~~tlfVgnLp~~vte~~L~~lFs~~G~V~~vki~~d~~tgk~kgfgFVeF~~~e~A~~Al~~Lng~~i~gr~L~V~~a~ 296 (935)
..+.|+|.|||+..+-.+++.||+.||.|.+|+|......+-++|||||+|-++.+|.+|+.+|.++-+-||.|.+.|+.
T Consensus 612 ~~tKIlVRNipFeAt~rEVr~LF~aFGqlksvRlPKK~~k~a~rGF~Fv~f~t~~ea~nA~~al~STHlyGRrLVLEwA~ 691 (725)
T KOG0110|consen 612 KGTKILVRNIPFEATKREVRKLFTAFGQLKSVRLPKKIGKGAHRGFGFVDFLTPREAKNAFDALGSTHLYGRRLVLEWAK 691 (725)
T ss_pred ccceeeeeccchHHHHHHHHHHHhcccceeeeccchhhcchhhccceeeeccCcHHHHHHHHhhcccceechhhheehhc
Confidence 36789999999999999999999999999999998865566779999999999999999999999999999999999988
Q ss_pred hhHHHHHHHHH
Q 002335 297 ATREYLERYVD 307 (935)
Q Consensus 297 ~~~~~l~~~k~ 307 (935)
.... ++....
T Consensus 692 ~d~~-~e~~r~ 701 (725)
T KOG0110|consen 692 SDNT-MEALRE 701 (725)
T ss_pred cchH-HHHHHH
Confidence 7644 444443
No 79
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=98.39 E-value=2.2e-06 Score=87.84 Aligned_cols=83 Identities=14% Similarity=0.207 Sum_probs=69.3
Q ss_pred CCCcceeeccCCCCCCHHHHHHHHHhcCCcceeeeec-cCCCCCCCceEEEEeCCHHHHHHHHHHhCCceeC---CeEEE
Q 002335 216 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQ-YPSNGTPKGFGFCEFESAEGVLRALRLLNKFNID---GQELM 291 (935)
Q Consensus 216 ~~~~tlfVgnLp~~vte~~L~~lFs~~G~V~~vki~~-d~~tgk~kgfgFVeF~~~e~A~~Al~~Lng~~i~---gr~L~ 291 (935)
...+||||.+||.++...+|..||..|-....+-+.. ++...-++-+|||+|.+...|..|+..|||+.|| +..|+
T Consensus 32 ~~VRTLFVSGLP~DvKpREiynLFR~f~GYEgslLK~Tsk~~~~~~pvaFatF~s~q~A~aamnaLNGvrFDpE~~stLh 111 (284)
T KOG1457|consen 32 GAVRTLFVSGLPNDVKPREIYNLFRRFHGYEGSLLKYTSKGDQVCKPVAFATFTSHQFALAAMNALNGVRFDPETGSTLH 111 (284)
T ss_pred cccceeeeccCCcccCHHHHHHHhccCCCccceeeeeccCCCccccceEEEEecchHHHHHHHHHhcCeeeccccCceeE
Confidence 3479999999999999999999999998777765533 2222234579999999999999999999999998 78899
Q ss_pred EEeechh
Q 002335 292 LKVDQAT 298 (935)
Q Consensus 292 V~~a~~~ 298 (935)
|+++.+.
T Consensus 112 iElAKSN 118 (284)
T KOG1457|consen 112 IELAKSN 118 (284)
T ss_pred eeehhcC
Confidence 9988774
No 80
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=98.35 E-value=5.8e-05 Score=81.78 Aligned_cols=74 Identities=14% Similarity=0.141 Sum_probs=47.0
Q ss_pred eccCCCCCCHHHHHHHHHhcCCcceeeeeccCCCCCCCceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEeechhHHHH
Q 002335 223 VGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVDQATREYL 302 (935)
Q Consensus 223 VgnLp~~vte~~L~~lFs~~G~V~~vki~~d~~tgk~kgfgFVeF~~~e~A~~Al~~Lng~~i~gr~L~V~~a~~~~~~l 302 (935)
|+--...+++.++..|+.+.-.|.+.-|.+-..+..-..|+ .-.+....||.++. ..+|..+..|+.+|
T Consensus 350 ~~p~~~plSeAEFEdiM~RNraiSSSAIsrAvsdASaGDy~----~AiETllTAI~lIK-------qSrv~~DdRCrvLi 418 (498)
T KOG4849|consen 350 VNPQMFPLSEAEFEDIMTRNRAISSSAISRAVSDASAGDYK----GAIETLLTAIQLIK-------QSRVGHDDRCRVLI 418 (498)
T ss_pred CCCCCccchHHHHHHHHhhcchhhHHHHHHHhcccccccch----hHHHHHHHHHHHHH-------hhccccchHHHHHH
Confidence 33344458999999999999888886554432112222233 23566678887765 45677777777777
Q ss_pred HHHHH
Q 002335 303 ERYVD 307 (935)
Q Consensus 303 ~~~k~ 307 (935)
..++.
T Consensus 419 ssL~d 423 (498)
T KOG4849|consen 419 SSLED 423 (498)
T ss_pred HHHHH
Confidence 66654
No 81
>KOG2416 consensus Acinus (induces apoptotic chromatin condensation) [Chromatin structure and dynamics]
Probab=98.33 E-value=2.1e-06 Score=98.38 Aligned_cols=79 Identities=13% Similarity=0.183 Sum_probs=65.9
Q ss_pred CCCCCcceeeccCCCCCCHHHHHHHHH-hcCCcceeeeeccCCCCCCCceEEEEeCCHHHHHHHHHHhCCcee---CCeE
Q 002335 214 AEKPQTKVYVGKIAPTADSDFVLSVLK-VCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNI---DGQE 289 (935)
Q Consensus 214 ~~~~~~tlfVgnLp~~vte~~L~~lFs-~~G~V~~vki~~d~~tgk~kgfgFVeF~~~e~A~~Al~~Lng~~i---~gr~ 289 (935)
....++.|||.||-.-+|...|+.||+ .||.|... |.| +.+..|||.|.+.++|...+.+|||+.+ +++.
T Consensus 440 R~~~SnvlhI~nLvRPFTlgQLkelL~rtgg~Vee~--WmD----kIKShCyV~yss~eEA~atr~AlhnV~WP~sNPK~ 513 (718)
T KOG2416|consen 440 RKEPSNVLHIDNLVRPFTLGQLKELLGRTGGNVEEF--WMD----KIKSHCYVSYSSVEEAAATREALHNVQWPPSNPKH 513 (718)
T ss_pred CCCccceEeeecccccchHHHHHHHHhhccCchHHH--HHH----HhhcceeEecccHHHHHHHHHHHhccccCCCCCce
Confidence 345578999999999999999999999 56666665 444 3567899999999999999999999987 5788
Q ss_pred EEEEeechh
Q 002335 290 LMLKVDQAT 298 (935)
Q Consensus 290 L~V~~a~~~ 298 (935)
|.|+|+...
T Consensus 514 L~adf~~~d 522 (718)
T KOG2416|consen 514 LIADFVRAD 522 (718)
T ss_pred eEeeecchh
Confidence 999887653
No 82
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=98.32 E-value=9.5e-07 Score=100.59 Aligned_cols=77 Identities=19% Similarity=0.364 Sum_probs=71.3
Q ss_pred cceeeccCCCCCCHHHHHHHHHhcCCcceeeeeccCCCCCCCceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEeechh
Q 002335 219 TKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVDQAT 298 (935)
Q Consensus 219 ~tlfVgnLp~~vte~~L~~lFs~~G~V~~vki~~d~~tgk~kgfgFVeF~~~e~A~~Al~~Lng~~i~gr~L~V~~a~~~ 298 (935)
..|||| +.|++..|..+|+.+|.|.++++.+|. | +.|||||.|.+..+|.+||..||...|.|+.|+|.|.+..
T Consensus 2 ~sl~vg---~~v~e~~l~~~f~~~~~v~s~rvc~d~-t--slgy~yvnf~~~~da~~A~~~~n~~~~~~~~~rim~s~rd 75 (369)
T KOG0123|consen 2 ASLYVG---PDVTEAMLFDKFSPAGPVLSIRVCRDA-T--SLGYAYVNFQQPADAERALDTMNFDVLKGKPIRIMWSQRD 75 (369)
T ss_pred CceecC---CcCChHHHHHHhcccCCceeEEEeecC-C--ccceEEEecCCHHHHHHHHHHcCCcccCCcEEEeehhccC
Confidence 468999 899999999999999999999999996 4 9999999999999999999999999999999999998775
Q ss_pred HHH
Q 002335 299 REY 301 (935)
Q Consensus 299 ~~~ 301 (935)
..+
T Consensus 76 ~~~ 78 (369)
T KOG0123|consen 76 PSL 78 (369)
T ss_pred Cce
Confidence 443
No 83
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=98.27 E-value=1.7e-06 Score=93.89 Aligned_cols=80 Identities=25% Similarity=0.390 Sum_probs=73.0
Q ss_pred CCCcceeeccCCCCCCHHHHHHHHHhcCCcce--------eeeeccCCCCCCCceEEEEeCCHHHHHHHHHHhCCceeCC
Q 002335 216 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKS--------WKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDG 287 (935)
Q Consensus 216 ~~~~tlfVgnLp~~vte~~L~~lFs~~G~V~~--------vki~~d~~tgk~kgfgFVeF~~~e~A~~Al~~Lng~~i~g 287 (935)
...+.|||.|||..+|.+++..+|++||.|.. |++.++ ..|+.+|=|.|.|...+++.-||.+|++..|.|
T Consensus 132 ~~Nt~VYVsgLP~DiT~dE~~~~~sKcGiI~~d~~t~epk~KlYrd-~~G~lKGDaLc~y~K~ESVeLA~~ilDe~~~rg 210 (382)
T KOG1548|consen 132 KVNTSVYVSGLPLDITVDEFAEVMSKCGIIMRDPQTGEPKVKLYRD-NQGKLKGDALCCYIKRESVELAIKILDEDELRG 210 (382)
T ss_pred ccCceEEecCCCCcccHHHHHHHHHhcceEeccCCCCCeeEEEEec-CCCCccCceEEEeecccHHHHHHHHhCcccccC
Confidence 34566999999999999999999999998875 788888 579999999999999999999999999999999
Q ss_pred eEEEEEeec
Q 002335 288 QELMLKVDQ 296 (935)
Q Consensus 288 r~L~V~~a~ 296 (935)
+.|+|..+.
T Consensus 211 ~~~rVerAk 219 (382)
T KOG1548|consen 211 KKLRVERAK 219 (382)
T ss_pred cEEEEehhh
Confidence 999997654
No 84
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=98.25 E-value=1.5e-06 Score=96.19 Aligned_cols=77 Identities=21% Similarity=0.270 Sum_probs=69.9
Q ss_pred CCCCCcceeeccCCCCCCHHHHHHHHHhcCCcceeeeeccCCCCCCCceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEE
Q 002335 214 AEKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLK 293 (935)
Q Consensus 214 ~~~~~~tlfVgnLp~~vte~~L~~lFs~~G~V~~vki~~d~~tgk~kgfgFVeF~~~e~A~~Al~~Lng~~i~gr~L~V~ 293 (935)
.....|+|||.|||+++|...|+.-|..||.|..+.|+- .|+++| .|.|.+++.|++|+++|||..++|+.|.|.
T Consensus 532 aarKa~qIiirNlP~dfTWqmlrDKfre~G~v~yadime---~GkskG--VVrF~s~edAEra~a~Mngs~l~Gr~I~V~ 606 (608)
T KOG4212|consen 532 AARKACQIIIRNLPFDFTWQMLRDKFREIGHVLYADIME---NGKSKG--VVRFFSPEDAERACALMNGSRLDGRNIKVT 606 (608)
T ss_pred ccccccEEEEecCCccccHHHHHHHHHhccceehhhhhc---cCCccc--eEEecCHHHHHHHHHHhccCcccCceeeee
Confidence 345678999999999999999999999999999999843 677777 899999999999999999999999999998
Q ss_pred ee
Q 002335 294 VD 295 (935)
Q Consensus 294 ~a 295 (935)
++
T Consensus 607 y~ 608 (608)
T KOG4212|consen 607 YF 608 (608)
T ss_pred eC
Confidence 64
No 85
>KOG0116 consensus RasGAP SH3 binding protein rasputin, contains NTF2 and RRM domains [Signal transduction mechanisms]
Probab=98.23 E-value=1.7e-06 Score=99.06 Aligned_cols=75 Identities=27% Similarity=0.427 Sum_probs=66.3
Q ss_pred CcceeeccCCCCCCHHHHHHHHHhcCCcceeeeeccCCCCCCCceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEE
Q 002335 218 QTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLK 293 (935)
Q Consensus 218 ~~tlfVgnLp~~vte~~L~~lFs~~G~V~~vki~~d~~tgk~kgfgFVeF~~~e~A~~Al~~Lng~~i~gr~L~V~ 293 (935)
..+|||+|||.+++..+|.++|..||.|+...|....-.++..|||||+|.+..++..||.+ +-+.|++++|.|.
T Consensus 288 ~~~i~V~nlP~da~~~~l~~~Fk~FG~Ik~~~I~vr~~~~~~~~fgFV~f~~~~~~~~~i~A-sp~~ig~~kl~Ve 362 (419)
T KOG0116|consen 288 GLGIFVKNLPPDATPAELEEVFKQFGPIKEGGIQVRSPGGKNPCFGFVEFENAAAVQNAIEA-SPLEIGGRKLNVE 362 (419)
T ss_pred ccceEeecCCCCCCHHHHHHHHhhcccccccceEEeccCCCcCceEEEEEeecchhhhhhhc-CccccCCeeEEEE
Confidence 45599999999999999999999999999987765433566669999999999999999997 6899999999995
No 86
>KOG0151 consensus Predicted splicing regulator, contains RRM, SWAP and RPR domains [General function prediction only]
Probab=98.23 E-value=2.4e-06 Score=99.54 Aligned_cols=84 Identities=25% Similarity=0.375 Sum_probs=74.9
Q ss_pred CCCCCcceeeccCCCCCCHHHHHHHHHhcCCcceeeeeccC---CCCCCCceEEEEeCCHHHHHHHHHHhCCceeCCeEE
Q 002335 214 AEKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYP---SNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQEL 290 (935)
Q Consensus 214 ~~~~~~tlfVgnLp~~vte~~L~~lFs~~G~V~~vki~~d~---~tgk~kgfgFVeF~~~e~A~~Al~~Lng~~i~gr~L 290 (935)
.++..++||||||++.+++..|...|++||.|.+++|+.-+ .......||||-|.+..++++|+..|+|..|.+..+
T Consensus 170 gDP~TTNlyv~Nlnpsv~E~~ll~tfGrfgPlasvKimwpRtEeEk~r~r~cgfvafmnR~D~era~k~lqg~iv~~~e~ 249 (877)
T KOG0151|consen 170 GDPQTTNLYVGNLNPSVDENFLLRTFGRFGPLASVKIMWPRTEEEKRRERNCGFVAFMNRADAERALKELQGIIVMEYEM 249 (877)
T ss_pred CCCcccceeeecCCccccHHHHHHHhcccCcccceeeecccchhhhccccccceeeehhhhhHHHHHHHhcceeeeeeee
Confidence 35567899999999999999999999999999999988754 234566899999999999999999999999999999
Q ss_pred EEEeech
Q 002335 291 MLKVDQA 297 (935)
Q Consensus 291 ~V~~a~~ 297 (935)
++.|...
T Consensus 250 K~gWgk~ 256 (877)
T KOG0151|consen 250 KLGWGKA 256 (877)
T ss_pred eeccccc
Confidence 9999844
No 87
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=98.23 E-value=6.2e-07 Score=91.64 Aligned_cols=80 Identities=14% Similarity=0.141 Sum_probs=73.4
Q ss_pred CCcceeeccCCCCCCHHHHHHHHHhcCCcceeeeeccCCCCCCCceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEeec
Q 002335 217 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVDQ 296 (935)
Q Consensus 217 ~~~tlfVgnLp~~vte~~L~~lFs~~G~V~~vki~~d~~tgk~kgfgFVeF~~~e~A~~Al~~Lng~~i~gr~L~V~~a~ 296 (935)
-.+||||+|+...|+++.|.++|...|.|..|.|..+ .+++.+ |+||.|.+.-++.-|+.+|||..+.+..|.|.+--
T Consensus 8 ~drtl~v~n~~~~v~eelL~ElfiqaGPV~kv~ip~~-~d~~~k-Fa~v~f~~E~sv~~a~~L~ng~~l~~~e~q~~~r~ 85 (267)
T KOG4454|consen 8 MDRTLLVQNMYSGVSEELLSELFIQAGPVYKVGIPSG-QDQEQK-FAYVFFPNENSVQLAGQLENGDDLEEDEEQRTLRC 85 (267)
T ss_pred hhhHHHHHhhhhhhhHHHHHHHhhccCceEEEeCCCC-ccCCCc-eeeeecccccchhhhhhhcccchhccchhhccccc
Confidence 4689999999999999999999999999999999887 577777 99999999999999999999999999999998755
Q ss_pred hh
Q 002335 297 AT 298 (935)
Q Consensus 297 ~~ 298 (935)
.+
T Consensus 86 G~ 87 (267)
T KOG4454|consen 86 GN 87 (267)
T ss_pred CC
Confidence 54
No 88
>KOG0533 consensus RRM motif-containing protein [RNA processing and modification]
Probab=98.14 E-value=6.2e-06 Score=87.89 Aligned_cols=81 Identities=17% Similarity=0.205 Sum_probs=74.3
Q ss_pred CCCcceeeccCCCCCCHHHHHHHHHhcCCcceeeeeccCCCCCCCceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEee
Q 002335 216 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVD 295 (935)
Q Consensus 216 ~~~~tlfVgnLp~~vte~~L~~lFs~~G~V~~vki~~d~~tgk~kgfgFVeF~~~e~A~~Al~~Lng~~i~gr~L~V~~a 295 (935)
....+|+|.||++.|.+.+|+++|..||.+..+-+..+ .+|.+.|+|-|.|...++|.+||..|||+.++|+.+.+.+.
T Consensus 81 ~~~~~v~v~NL~~~V~~~Dl~eLF~~~~~~~r~~vhy~-~~G~s~Gta~v~~~r~~DA~~avk~~~gv~ldG~~mk~~~i 159 (243)
T KOG0533|consen 81 TRSTKVNVSNLPYGVIDADLKELFAEFGELKRVAVHYD-RAGRSLGTADVSFNRRDDAERAVKKYNGVALDGRPMKIEII 159 (243)
T ss_pred CCcceeeeecCCcCcchHHHHHHHHHhccceEEeeccC-CCCCCCccceeeecchHhHHHHHHHhcCcccCCceeeeEEe
Confidence 44578999999999999999999999999999999888 59999999999999999999999999999999999888765
Q ss_pred ch
Q 002335 296 QA 297 (935)
Q Consensus 296 ~~ 297 (935)
..
T Consensus 160 ~~ 161 (243)
T KOG0533|consen 160 SS 161 (243)
T ss_pred cC
Confidence 44
No 89
>KOG4209 consensus Splicing factor RNPS1, SR protein superfamily [RNA processing and modification]
Probab=98.13 E-value=2.5e-06 Score=91.00 Aligned_cols=80 Identities=25% Similarity=0.387 Sum_probs=74.7
Q ss_pred CCCCcceeeccCCCCCCHHHHHHHHHhcCCcceeeeeccCCCCCCCceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEe
Q 002335 215 EKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKV 294 (935)
Q Consensus 215 ~~~~~tlfVgnLp~~vte~~L~~lFs~~G~V~~vki~~d~~tgk~kgfgFVeF~~~e~A~~Al~~Lng~~i~gr~L~V~~ 294 (935)
....+.+||||+.+.++...+...|..||.|..+.|..+..+|.++||+||+|.+.+.+..||. |||..|.|+.|.|.+
T Consensus 98 ~~d~~sv~v~nvd~~~t~~~~e~hf~~Cg~i~~~ti~~d~~~~~~k~~~yvef~~~~~~~~ay~-l~gs~i~~~~i~vt~ 176 (231)
T KOG4209|consen 98 EVDAPSVWVGNVDFLVTLTKIELHFESCGGINRVTVPKDKFRGHPKGFAYVEFSSYELVEEAYK-LDGSEIPGPAIEVTL 176 (231)
T ss_pred ccCCceEEEeccccccccchhhheeeccCCccceeeeccccCCCcceeEEEecccHhhhHHHhh-cCCcccccccceeee
Confidence 3557889999999999999999999999999999999998888999999999999999999999 899999999999875
Q ss_pred e
Q 002335 295 D 295 (935)
Q Consensus 295 a 295 (935)
-
T Consensus 177 ~ 177 (231)
T KOG4209|consen 177 K 177 (231)
T ss_pred e
Confidence 3
No 90
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=98.06 E-value=3.3e-06 Score=93.36 Aligned_cols=81 Identities=20% Similarity=0.372 Sum_probs=75.7
Q ss_pred CCcceeeccCCCCCCHHHHHHHHHhcCCcceeeeeccCCCCCCCceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEeec
Q 002335 217 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVDQ 296 (935)
Q Consensus 217 ~~~tlfVgnLp~~vte~~L~~lFs~~G~V~~vki~~d~~tgk~kgfgFVeF~~~e~A~~Al~~Lng~~i~gr~L~V~~a~ 296 (935)
....||||+|+..+++.+|+.+|.+||.|..+-++.|..+.+.+|||||+|.+.+++.+++. +..+.|+|+.|.|+.+.
T Consensus 96 ~tkkiFvGG~~~~~~e~~~r~yfe~~g~v~~~~~~~d~~~~~~rgFgfv~~~~e~sVdkv~~-~~f~~~~gk~vevkrA~ 174 (311)
T KOG4205|consen 96 RTKKIFVGGLPPDTTEEDFKDYFEQFGKVADVVIMYDKTTSRPRGFGFVTFDSEDSVDKVTL-QKFHDFNGKKVEVKRAI 174 (311)
T ss_pred ceeEEEecCcCCCCchHHHhhhhhccceeEeeEEeecccccccccceeeEeccccccceecc-cceeeecCceeeEeecc
Confidence 35689999999999999999999999999999999999999999999999999999999987 48899999999999888
Q ss_pred hh
Q 002335 297 AT 298 (935)
Q Consensus 297 ~~ 298 (935)
.+
T Consensus 175 pk 176 (311)
T KOG4205|consen 175 PK 176 (311)
T ss_pred ch
Confidence 75
No 91
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=98.01 E-value=4.6e-06 Score=87.10 Aligned_cols=72 Identities=25% Similarity=0.415 Sum_probs=66.0
Q ss_pred cceeeccCCCCCCHHHHHHHHHhcCCcceeeeeccCCCCCCCceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEeechh
Q 002335 219 TKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVDQAT 298 (935)
Q Consensus 219 ~tlfVgnLp~~vte~~L~~lFs~~G~V~~vki~~d~~tgk~kgfgFVeF~~~e~A~~Al~~Lng~~i~gr~L~V~~a~~~ 298 (935)
..+|||+|++.+.+.+|..+|..||.|..+.+.. |||||+|.+.-+|.-||..|||..|+|-.|.|.|+...
T Consensus 2 ~rv~vg~~~~~~~~~d~E~~f~~yg~~~d~~mk~--------gf~fv~fed~rda~Dav~~l~~~~l~~e~~vve~~r~~ 73 (216)
T KOG0106|consen 2 PRVYIGRLPYRARERDVERFFKGYGKIPDADMKN--------GFGFVEFEDPRDADDAVHDLDGKELCGERLVVEHARGK 73 (216)
T ss_pred CceeecccCCccchhHHHHHHhhccccccceeec--------ccceeccCchhhhhcccchhcCceecceeeeeeccccc
Confidence 4689999999999999999999999999988754 79999999999999999999999999999888887753
No 92
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=97.99 E-value=6.9e-06 Score=95.19 Aligned_cols=87 Identities=22% Similarity=0.406 Sum_probs=79.9
Q ss_pred CCCCcceeeccCCCCCCHHHHHHHHHhcCCcceeeeeccCCCCCCCceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEe
Q 002335 215 EKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKV 294 (935)
Q Consensus 215 ~~~~~tlfVgnLp~~vte~~L~~lFs~~G~V~~vki~~d~~tgk~kgfgFVeF~~~e~A~~Al~~Lng~~i~gr~L~V~~ 294 (935)
......||||+|+..+++..+.+++..||.+....++.+..+|.++||+|++|++..-...|+..|||+.++++.|.|..
T Consensus 286 ~~~~~ki~v~~lp~~l~~~q~~Ell~~fg~lk~f~lv~d~~~g~skg~af~ey~dpsvtd~A~agLnGm~lgd~~lvvq~ 365 (500)
T KOG0120|consen 286 PDSPNKIFVGGLPLYLTEDQVKELLDSFGPLKAFRLVKDSATGNSKGFAFCEYCDPSVTDQAIAGLNGMQLGDKKLVVQR 365 (500)
T ss_pred ccccchhhhccCcCccCHHHHHHHHHhcccchhheeecccccccccceeeeeeeCCcchhhhhcccchhhhcCceeEeeh
Confidence 34567899999999999999999999999999999999998999999999999999999999999999999999999987
Q ss_pred echhHHH
Q 002335 295 DQATREY 301 (935)
Q Consensus 295 a~~~~~~ 301 (935)
+......
T Consensus 366 A~~g~~~ 372 (500)
T KOG0120|consen 366 AIVGASN 372 (500)
T ss_pred hhccchh
Confidence 7665433
No 93
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=97.78 E-value=2.3e-05 Score=90.16 Aligned_cols=72 Identities=22% Similarity=0.399 Sum_probs=64.8
Q ss_pred CCCCcceeeccCCCCCCHHHHHHHHHhcCCcceeeeeccCCCCCCCceEEEEeCCHHHHHHHHHHhCCceeCCeEEE
Q 002335 215 EKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELM 291 (935)
Q Consensus 215 ~~~~~tlfVgnLp~~vte~~L~~lFs~~G~V~~vki~~d~~tgk~kgfgFVeF~~~e~A~~Al~~Lng~~i~gr~L~ 291 (935)
....++|||-||+..|+.++|..+|+.||.|+.|+. +-...|.+||+|.|..+|.+|+++||+..|.|+.|+
T Consensus 72 ~~~~~~L~v~nl~~~Vsn~~L~~~f~~yGeir~ir~-----t~~~~~~~~v~FyDvR~A~~Alk~l~~~~~~~~~~k 143 (549)
T KOG4660|consen 72 DMNQGTLVVFNLPRSVSNDTLLRIFGAYGEIREIRE-----TPNKRGIVFVEFYDVRDAERALKALNRREIAGKRIK 143 (549)
T ss_pred cCccceEEEEecCCcCCHHHHHHHHHhhcchhhhhc-----ccccCceEEEEEeehHhHHHHHHHHHHHHhhhhhhc
Confidence 345789999999999999999999999999999654 444579999999999999999999999999998877
No 94
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=97.53 E-value=0.0004 Score=64.15 Aligned_cols=77 Identities=16% Similarity=0.221 Sum_probs=65.8
Q ss_pred cceeeccCCCCCCHHHHHHHHHh--cCCcceeeeeccCCCCCCCceEEEEeCCHHHHHHHHHHhCCceeC----CeEEEE
Q 002335 219 TKVYVGKIAPTADSDFVLSVLKV--CGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNID----GQELML 292 (935)
Q Consensus 219 ~tlfVgnLp~~vte~~L~~lFs~--~G~V~~vki~~d~~tgk~kgfgFVeF~~~e~A~~Al~~Lng~~i~----gr~L~V 292 (935)
+||.|.|||...+..+|..++.. .|..--+.+..|-.++.+.|||||.|.+...+.+-...++|..+. .+.+.|
T Consensus 2 TTvMirNIPn~~t~~~L~~~l~~~~~g~yDF~YLPiDf~~~~N~GYAFVNf~~~~~~~~F~~~f~g~~w~~~~s~Kvc~i 81 (97)
T PF04059_consen 2 TTVMIRNIPNKYTQEMLIQILDEHFKGKYDFFYLPIDFKNKCNLGYAFVNFTSPQAAIRFYKAFNGKKWPNFNSKKVCEI 81 (97)
T ss_pred eeEEEecCCCCCCHHHHHHHHHHhccCcceEEEeeeeccCCCceEEEEEEcCCHHHHHHHHHHHcCCccccCCCCcEEEE
Confidence 68999999999999999998874 356666778888888999999999999999999999999999886 445666
Q ss_pred Eee
Q 002335 293 KVD 295 (935)
Q Consensus 293 ~~a 295 (935)
.||
T Consensus 82 ~yA 84 (97)
T PF04059_consen 82 SYA 84 (97)
T ss_pred ehh
Confidence 665
No 95
>KOG2253 consensus U1 snRNP complex, subunit SNU71 and related PWI-motif proteins [RNA processing and modification]
Probab=97.51 E-value=0.0027 Score=74.95 Aligned_cols=34 Identities=35% Similarity=0.642 Sum_probs=26.0
Q ss_pred CCccccCccCCCCCCcchhcccCCCCcccCCCChH
Q 002335 693 GKRTAVPSVFHVEDDDDADKDKKMRPLVPIDYSTE 727 (935)
Q Consensus 693 ~~~~~~~~vf~~~dd~~~~~~~~~r~lvp~~y~~~ 727 (935)
.+++.+.+||++++|.|-+--.++ +||||+|+..
T Consensus 514 ~kk~~~~~v~~~~~d~Dk~v~~~k-k~vp~dyd~n 547 (668)
T KOG2253|consen 514 KKKLPETGVFREDDDEDKNVHEKK-KLVPLDYDRN 547 (668)
T ss_pred cccCCCcccccccCCcccccchhh-hcccccCChh
Confidence 356788999999888774444434 9999999984
No 96
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=97.50 E-value=7e-05 Score=86.09 Aligned_cols=84 Identities=18% Similarity=0.292 Sum_probs=77.7
Q ss_pred CCCCCcceeeccCCCCCCHHHHHHHHHhcCCcceeeeeccCCCCCCCceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEE
Q 002335 214 AEKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLK 293 (935)
Q Consensus 214 ~~~~~~tlfVgnLp~~vte~~L~~lFs~~G~V~~vki~~d~~tgk~kgfgFVeF~~~e~A~~Al~~Lng~~i~gr~L~V~ 293 (935)
.....+|+|+.-|...++.-+|..+|+.+|.|..|.+|.|+.++.++|.|||+|++.+++-.||. |.|..+.|..|.|.
T Consensus 175 eERd~Rtvf~~qla~r~~pRdL~efFs~~gkVrdVriI~Dr~s~rskgi~Yvef~D~~sVp~aia-LsGqrllg~pv~vq 253 (549)
T KOG0147|consen 175 EERDQRTVFCMQLARRNPPRDLEEFFSIVGKVRDVRIIGDRNSRRSKGIAYVEFCDEQSVPLAIA-LSGQRLLGVPVIVQ 253 (549)
T ss_pred hHHhHHHHHHHHHhhcCCchhHHHHHHhhcCcceeEeeccccchhhcceeEEEEecccchhhHhh-hcCCcccCceeEec
Confidence 45668999999999999999999999999999999999999999999999999999999999995 79999999999998
Q ss_pred eechh
Q 002335 294 VDQAT 298 (935)
Q Consensus 294 ~a~~~ 298 (935)
.....
T Consensus 254 ~sEae 258 (549)
T KOG0147|consen 254 LSEAE 258 (549)
T ss_pred ccHHH
Confidence 76654
No 97
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=97.45 E-value=0.00052 Score=76.31 Aligned_cols=76 Identities=16% Similarity=0.261 Sum_probs=68.4
Q ss_pred CcceeeccCCC-CCCHHHHHHHHHhcCCcceeeeeccCCCCCCCceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEeec
Q 002335 218 QTKVYVGKIAP-TADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVDQ 296 (935)
Q Consensus 218 ~~tlfVgnLp~-~vte~~L~~lFs~~G~V~~vki~~d~~tgk~kgfgFVeF~~~e~A~~Al~~Lng~~i~gr~L~V~~a~ 296 (935)
.+.|.|.||.. .+|.+-|..+|+.||.|.+|+|..++ +.-|.|.|.+...|.-|+..|+|+.|.|+.|+|.++.
T Consensus 297 n~vllvsnln~~~VT~d~LftlFgvYGdVqRVkil~nk-----kd~ALIQmsd~~qAqLA~~hL~g~~l~gk~lrvt~SK 371 (492)
T KOG1190|consen 297 NVVLLVSNLNEEAVTPDVLFTLFGVYGDVQRVKILYNK-----KDNALIQMSDGQQAQLAMEHLEGHKLYGKKLRVTLSK 371 (492)
T ss_pred ceEEEEecCchhccchhHHHHHHhhhcceEEEEeeecC-----CcceeeeecchhHHHHHHHHhhcceecCceEEEeecc
Confidence 57788888876 78999999999999999999999874 3679999999999999999999999999999998876
Q ss_pred hh
Q 002335 297 AT 298 (935)
Q Consensus 297 ~~ 298 (935)
..
T Consensus 372 H~ 373 (492)
T KOG1190|consen 372 HT 373 (492)
T ss_pred Cc
Confidence 54
No 98
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=97.35 E-value=0.00019 Score=73.94 Aligned_cols=65 Identities=17% Similarity=0.261 Sum_probs=55.1
Q ss_pred CCcceeeccCCCCCCHHHHHHHHHhcCCcceeeeeccCCCCCCCceEEEEeCCHHHHHHHHHHhCCcee
Q 002335 217 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNI 285 (935)
Q Consensus 217 ~~~tlfVgnLp~~vte~~L~~lFs~~G~V~~vki~~d~~tgk~kgfgFVeF~~~e~A~~Al~~Lng~~i 285 (935)
-+.||||.||...|++++|+.+|+.|.....++|-.. +| -+.+||+|++.+.|..|+..|.|..|
T Consensus 209 acstlfianl~~~~~ed~l~~~~~~~~gf~~l~~~~~--~g--~~vaf~~~~~~~~at~am~~lqg~~~ 273 (284)
T KOG1457|consen 209 ACSTLFIANLGPNCTEDELKQLLSRYPGFHILKIRAR--GG--MPVAFADFEEIEQATDAMNHLQGNLL 273 (284)
T ss_pred hhhhHhhhccCCCCCHHHHHHHHHhCCCceEEEEecC--CC--cceEeecHHHHHHHHHHHHHhhccee
Confidence 3679999999999999999999999987766665321 23 36899999999999999999998876
No 99
>KOG3671 consensus Actin regulatory protein (Wiskott-Aldrich syndrome protein) [Signal transduction mechanisms; Cytoskeleton]
Probab=97.31 E-value=0.018 Score=66.07 Aligned_cols=30 Identities=17% Similarity=0.257 Sum_probs=14.1
Q ss_pred cceeeccCCCCCCHHHHHHHHHhcCCccee
Q 002335 219 TKVYVGKIAPTADSDFVLSVLKVCGTVKSW 248 (935)
Q Consensus 219 ~tlfVgnLp~~vte~~L~~lFs~~G~V~~v 248 (935)
..+-+..|+..-..+.|..-...-|.+..+
T Consensus 482 ~~ve~t~~~~~dgR~~LmaqIRqG~~Lk~v 511 (569)
T KOG3671|consen 482 KKVETTALSSGDGRDALMAQIRQGGQLKKV 511 (569)
T ss_pred cceeeccCcCcccHHHHHHHHHhccccccc
Confidence 344555566444444444433344554444
No 100
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=97.26 E-value=0.00055 Score=74.43 Aligned_cols=78 Identities=23% Similarity=0.322 Sum_probs=68.5
Q ss_pred CCCCcceeeccCCCCCCHHHHHHHHHhcC--CcceeeeeccCCCCCCCceEEEEeCCHHHHHHHHHHhCCceeCCeEEEE
Q 002335 215 EKPQTKVYVGKIAPTADSDFVLSVLKVCG--TVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELML 292 (935)
Q Consensus 215 ~~~~~tlfVgnLp~~vte~~L~~lFs~~G--~V~~vki~~d~~tgk~kgfgFVeF~~~e~A~~Al~~Lng~~i~gr~L~V 292 (935)
.....++|||||.|.+|+++|.+.+...| .|..+++.-++.+|.++||+.|...+..+....+.+|--..|+|+.-.|
T Consensus 77 ~Grk~~~YvGNL~W~TTD~DL~~A~~S~G~~~~~dmKFFENR~NGQSKG~AL~~~~SdAa~Kq~MeiLP~k~iHGQ~P~V 156 (498)
T KOG4849|consen 77 EGRKYCCYVGNLLWYTTDADLLKALQSTGLAQFADMKFFENRTNGQSKGYALLVLNSDAAVKQTMEILPTKTIHGQSPTV 156 (498)
T ss_pred cCceEEEEecceeEEeccHHHHHHHHhhhHHHHhhhhhhhcccCCcccceEEEEecchHHHHHHHHhcccceecCCCCee
Confidence 34456899999999999999999888776 5677888888899999999999999999999999999999999987555
No 101
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=97.19 E-value=9.3e-05 Score=81.58 Aligned_cols=64 Identities=14% Similarity=-0.019 Sum_probs=52.8
Q ss_pred CcceeeccCCCCCCHHHHHHHHHhcCCcceeeeeccCCCCCCCceEEEEeCCHHHHHHHHHHhCCceeC
Q 002335 218 QTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNID 286 (935)
Q Consensus 218 ~~tlfVgnLp~~vte~~L~~lFs~~G~V~~vki~~d~~tgk~kgfgFVeF~~~e~A~~Al~~Lng~~i~ 286 (935)
.+||+|++|...+-..++..+|..+|.|....+. .|....||.|+|+...+..-|+.. +|..+.
T Consensus 151 rRt~~v~sl~~~~~l~e~~e~f~r~Gev~ya~~a----sk~~s~~c~~sf~~qts~~halr~-~gre~k 214 (479)
T KOG4676|consen 151 RRTREVQSLISAAILPESGESFERKGEVSYAHTA----SKSRSSSCSHSFRKQTSSKHALRS-HGRERK 214 (479)
T ss_pred Hhhhhhhcchhhhcchhhhhhhhhcchhhhhhhh----ccCCCcchhhhHhhhhhHHHHHHh-cchhhh
Confidence 4899999999999999999999999999876653 445567888999999998888885 665554
No 102
>KOG1995 consensus Conserved Zn-finger protein [General function prediction only]
Probab=97.16 E-value=0.00034 Score=77.09 Aligned_cols=83 Identities=14% Similarity=0.229 Sum_probs=74.5
Q ss_pred CCCcceeeccCCCCCCHHHHHHHHHhcCCcce--------eeeeccCCCCCCCceEEEEeCCHHHHHHHHHHhCCceeCC
Q 002335 216 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKS--------WKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDG 287 (935)
Q Consensus 216 ~~~~tlfVgnLp~~vte~~L~~lFs~~G~V~~--------vki~~d~~tgk~kgfgFVeF~~~e~A~~Al~~Lng~~i~g 287 (935)
....+|||-+|+..++...|..+|.+||.|.. |.|.+++.|++.++=|.|.|.+...|+.||..+++..|.+
T Consensus 64 s~~~ti~v~g~~d~~~~~~~~~~f~qcg~ikrnK~t~kPki~~y~dkeT~~~KGeatvS~~D~~~akaai~~~agkdf~g 143 (351)
T KOG1995|consen 64 SDNETIFVWGCPDSVCENDNADFFLQCGVIKRNKRTGKPKIKIYTDKETGAPKGEATVSYEDPPAAKAAIEWFAGKDFCG 143 (351)
T ss_pred cccccceeeccCccchHHHHHHHHhhcceeccCCCCCCcchhccccccccCcCCceeeeecChhhhhhhhhhhccccccC
Confidence 34678999999999999999999999998875 5677888999999999999999999999999999999999
Q ss_pred eEEEEEeechh
Q 002335 288 QELMLKVDQAT 298 (935)
Q Consensus 288 r~L~V~~a~~~ 298 (935)
..|+|.++..+
T Consensus 144 n~ikvs~a~~r 154 (351)
T KOG1995|consen 144 NTIKVSLAERR 154 (351)
T ss_pred CCchhhhhhhc
Confidence 88888766554
No 103
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=97.02 E-value=0.065 Score=63.60 Aligned_cols=78 Identities=12% Similarity=0.077 Sum_probs=67.3
Q ss_pred CCCcceeeccCCCCCCHHHHHHHHHhcCCcce-eeeeccCCCCCCCceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEe
Q 002335 216 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKS-WKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKV 294 (935)
Q Consensus 216 ~~~~tlfVgnLp~~vte~~L~~lFs~~G~V~~-vki~~d~~tgk~kgfgFVeF~~~e~A~~Al~~Lng~~i~gr~L~V~~ 294 (935)
.-..+|||-.||..++...+..+|+..-.|.. |.|.+. -+++..+-|||.|...+++.+|+..-+.+.++.+.|+|+-
T Consensus 432 ~ag~~lyv~~lP~~t~~~~~v~~f~~~~~Ved~I~lt~~-P~~~~~~~afv~F~~~~a~~~a~~~~~k~y~G~r~irv~s 510 (944)
T KOG4307|consen 432 GAGGALYVFQLPVMTPIVPPVNKFMGAAAVEDFIELTRL-PTDLLRPAAFVAFIHPTAPLTASSVKTKFYPGHRIIRVDS 510 (944)
T ss_pred CccceEEeccCCccccccchhhhhhhhhhhhheeEeccC-CcccccchhhheeccccccchhhhcccccccCceEEEeec
Confidence 33678999999999999999999998777877 556555 4889999999999999999999988888999999999963
No 104
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=97.00 E-value=0.013 Score=64.73 Aligned_cols=76 Identities=22% Similarity=0.263 Sum_probs=66.5
Q ss_pred CCCcceeeccCCCC-CCHHHHHHHHHhcCCcceeeeeccCCCCCCCceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEe
Q 002335 216 KPQTKVYVGKIAPT-ADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKV 294 (935)
Q Consensus 216 ~~~~tlfVgnLp~~-vte~~L~~lFs~~G~V~~vki~~d~~tgk~kgfgFVeF~~~e~A~~Al~~Lng~~i~gr~L~V~~ 294 (935)
.+.+.+.|.+|... ++-+.|..||..||.|..|++++-+ .|-|.|++.+....++||..||+..+-|.+|.|.+
T Consensus 285 ~~g~VmMVyGLdh~k~N~drlFNl~ClYGNV~rvkFmkTk-----~gtamVemgd~~aver~v~hLnn~~lfG~kl~v~~ 359 (494)
T KOG1456|consen 285 APGCVMMVYGLDHGKMNCDRLFNLFCLYGNVERVKFMKTK-----PGTAMVEMGDAYAVERAVTHLNNIPLFGGKLNVCV 359 (494)
T ss_pred CCCcEEEEEeccccccchhhhhhhhhhcCceeeEEEeecc-----cceeEEEcCcHHHHHHHHHHhccCccccceEEEee
Confidence 44688999999874 5556999999999999999998863 47899999999999999999999999999999987
Q ss_pred ec
Q 002335 295 DQ 296 (935)
Q Consensus 295 a~ 296 (935)
+.
T Consensus 360 Sk 361 (494)
T KOG1456|consen 360 SK 361 (494)
T ss_pred cc
Confidence 54
No 105
>KOG3152 consensus TBP-binding protein, activator of basal transcription (contains rrm motif) [Transcription]
Probab=96.99 E-value=0.0004 Score=73.24 Aligned_cols=87 Identities=25% Similarity=0.272 Sum_probs=67.3
Q ss_pred CCcceeeccCCCCCCHHHHHHHHHhcCCcceeeeeccCCC--------CCCCce----EEEEeCCHHHHHHHHHHhCCce
Q 002335 217 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSN--------GTPKGF----GFCEFESAEGVLRALRLLNKFN 284 (935)
Q Consensus 217 ~~~tlfVgnLp~~vte~~L~~lFs~~G~V~~vki~~d~~t--------gk~kgf----gFVeF~~~e~A~~Al~~Lng~~ 284 (935)
....||+++||+.+...-|++||+.||.|-+|.+.....+ |+..++ |+|+|.+...|.++...|||..
T Consensus 73 k~GVvylS~IPp~m~~~rlReil~~yGeVGRvylqpE~~s~~~~r~~~~~n~~~~y~EGWvEF~~KrvAK~iAe~Lnn~~ 152 (278)
T KOG3152|consen 73 KTGVVYLSNIPPYMDPVRLREILSQYGEVGRVYLQPEDDSKRAARKRKGGNYKKLYSEGWVEFISKRVAKRIAELLNNTP 152 (278)
T ss_pred cceEEEeccCCCccCHHHHHHHHHhccccceEEecchhhHHHHHHhhcCCCccccchhHHHHHHHHHHHHHHHHHhCCCc
Confidence 3467999999999999999999999999999987654322 333332 7899999999999999999999
Q ss_pred eCCeE-EEEEeechhHHHHH
Q 002335 285 IDGQE-LMLKVDQATREYLE 303 (935)
Q Consensus 285 i~gr~-L~V~~a~~~~~~l~ 303 (935)
|+|++ -.+..+.-.-+||-
T Consensus 153 Iggkk~S~~~~dlWNmKYLp 172 (278)
T KOG3152|consen 153 IGGKKKSPFRDDLWNMKYLP 172 (278)
T ss_pred cCCCCCCchHHhhhhhhhcc
Confidence 99875 33443444444553
No 106
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=96.96 E-value=0.0021 Score=60.45 Aligned_cols=85 Identities=19% Similarity=0.340 Sum_probs=52.0
Q ss_pred cceeeccCCCCCCHHHHHHHHHhcCCcceeeeeccCCCCCCCceEEEEeCCHHHHHHHHHHhC-----CceeCCeEEEEE
Q 002335 219 TKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLN-----KFNIDGQELMLK 293 (935)
Q Consensus 219 ~tlfVgnLp~~vte~~L~~lFs~~G~V~~vki~~d~~tgk~kgfgFVeF~~~e~A~~Al~~Ln-----g~~i~gr~L~V~ 293 (935)
+.|+|.++...++-.+|+.+|+.||.|..|.+... ..-|||-|.+.+.|..|+..+. ++.|.+..+.+.
T Consensus 2 ~il~~~g~~~~~~re~iK~~f~~~g~V~yVD~~~G------~~~g~VRf~~~~~A~~a~~~~~~~~~~~~~i~~~~~~~~ 75 (105)
T PF08777_consen 2 CILKFSGLGEPTSREDIKEAFSQFGEVAYVDFSRG------DTEGYVRFKTPEAAQKALEKLKEANDGKLKIKGKEVTLE 75 (105)
T ss_dssp -EEEEEE--SS--HHHHHHHT-SS--EEEEE--TT-------SEEEEEESS---HHHHHHHHHHTTTS-B-TTSSSEEEE
T ss_pred eEEEEecCCCCcCHHHHHHHHHhcCCcceEEecCC------CCEEEEEECCcchHHHHHHHHHhccCCceEEcCceEEEE
Confidence 56888889999999999999999999999988765 2689999999999999997663 457777777666
Q ss_pred eech--hHHHHHHHHHHh
Q 002335 294 VDQA--TREYLERYVDKK 309 (935)
Q Consensus 294 ~a~~--~~~~l~~~k~kk 309 (935)
+-.. ...||......+
T Consensus 76 vLeGeeE~~Yw~ki~e~~ 93 (105)
T PF08777_consen 76 VLEGEEEEEYWKKIIEDR 93 (105)
T ss_dssp ---HHHHHHHHHHHHHHH
T ss_pred ECCCHHHHHHHHHHHHHH
Confidence 5333 335666665544
No 107
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=96.94 E-value=0.0026 Score=56.53 Aligned_cols=70 Identities=19% Similarity=0.291 Sum_probs=48.1
Q ss_pred cceeeccCCCCCCHH----HHHHHHHhcC-CcceeeeeccCCCCCCCceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEE
Q 002335 219 TKVYVGKIAPTADSD----FVLSVLKVCG-TVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLK 293 (935)
Q Consensus 219 ~tlfVgnLp~~vte~----~L~~lFs~~G-~V~~vki~~d~~tgk~kgfgFVeF~~~e~A~~Al~~Lng~~i~gr~L~V~ 293 (935)
..|||.|||...... -|+.|+..|| .|.+|. .+-|+|-|.+.+.|.+|..-|+|-.+.|++|.|.
T Consensus 3 s~L~V~NLP~~~d~~~I~~RL~qLsdNCGGkVl~v~----------~~tAilrF~~~~~A~RA~KRmegEdVfG~kI~v~ 72 (90)
T PF11608_consen 3 SLLYVSNLPTNKDPSSIKNRLRQLSDNCGGKVLSVS----------GGTAILRFPNQEFAERAQKRMEGEDVFGNKISVS 72 (90)
T ss_dssp EEEEEES--TTS-HHHHHHHHHHHHHTTT--EEE------------TT-EEEEESSHHHHHHHHHHHTT--SSSS--EEE
T ss_pred cEEEEecCCCCCCHHHHHHHHHHHhhccCCEEEEEe----------CCEEEEEeCCHHHHHHHHHhhcccccccceEEEE
Confidence 469999999988875 4566777776 566541 2789999999999999999999999999999999
Q ss_pred eechh
Q 002335 294 VDQAT 298 (935)
Q Consensus 294 ~a~~~ 298 (935)
|....
T Consensus 73 ~~~~~ 77 (90)
T PF11608_consen 73 FSPKN 77 (90)
T ss_dssp SS--S
T ss_pred EcCCc
Confidence 87554
No 108
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=96.87 E-value=0.0025 Score=73.47 Aligned_cols=77 Identities=18% Similarity=0.295 Sum_probs=62.4
Q ss_pred CCcceeeccCCCCCCH------HHHHHHHHhcCCcceeeeeccCCCCCCCceEEEEeCCHHHHHHHHHHhCCceeC-CeE
Q 002335 217 PQTKVYVGKIAPTADS------DFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNID-GQE 289 (935)
Q Consensus 217 ~~~tlfVgnLp~~vte------~~L~~lFs~~G~V~~vki~~d~~tgk~kgfgFVeF~~~e~A~~Al~~Lng~~i~-gr~ 289 (935)
-...|+|.|+|---.. .-|..+|+++|.|....+..+. .|+++||.|++|.+..+|..|+..|||+.|+ .+.
T Consensus 57 ~D~vVvv~g~PvV~~~rl~klk~vl~kvfsk~gk~vn~~~P~~e-~ggtkG~lf~E~~~~~~A~~aVK~l~G~~ldknHt 135 (698)
T KOG2314|consen 57 FDSVVVVDGAPVVGPARLEKLKKVLTKVFSKAGKIVNMYYPIDE-EGGTKGYLFVEYASMRDAKKAVKSLNGKRLDKNHT 135 (698)
T ss_pred cceEEEECCCcccChhHHHHHHHHHHHHHHhhccccceeeccCc-cCCeeeEEEEEecChhhHHHHHHhcccceecccce
Confidence 3567889998853322 2466799999999999998885 5559999999999999999999999999998 455
Q ss_pred EEEEe
Q 002335 290 LMLKV 294 (935)
Q Consensus 290 L~V~~ 294 (935)
+.|..
T Consensus 136 f~v~~ 140 (698)
T KOG2314|consen 136 FFVRL 140 (698)
T ss_pred EEeeh
Confidence 66653
No 109
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=96.77 E-value=0.00065 Score=75.00 Aligned_cols=80 Identities=21% Similarity=0.356 Sum_probs=72.5
Q ss_pred Cccee-eccCCCCCCHHHHHHHHHhcCCcceeeeeccCCCCCCCceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEeec
Q 002335 218 QTKVY-VGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVDQ 296 (935)
Q Consensus 218 ~~tlf-VgnLp~~vte~~L~~lFs~~G~V~~vki~~d~~tgk~kgfgFVeF~~~e~A~~Al~~Lng~~i~gr~L~V~~a~ 296 (935)
..++| |+||+..++.++|+..|..||.|..+++..+..+|.++|||||.|.+......|+.. ....|+++.|.|..+.
T Consensus 184 s~~~~~~~~~~f~~~~d~~~~~~~~~~~i~~~r~~~~~~s~~~kg~a~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 262 (285)
T KOG4210|consen 184 SDTIFFVGELDFSLTRDDLKEHFVSSGEITSVRLPTDEESGDSKGFAYVDFSAGNSKKLALND-QTRSIGGRPLRLEEDE 262 (285)
T ss_pred cccceeecccccccchHHHhhhccCcCcceeeccCCCCCccchhhhhhhhhhhchhHHHHhhc-ccCcccCcccccccCC
Confidence 44455 999999999999999999999999999999999999999999999999999999987 8899999999998765
Q ss_pred hh
Q 002335 297 AT 298 (935)
Q Consensus 297 ~~ 298 (935)
..
T Consensus 263 ~~ 264 (285)
T KOG4210|consen 263 PR 264 (285)
T ss_pred CC
Confidence 53
No 110
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=96.74 E-value=0.034 Score=66.54 Aligned_cols=19 Identities=32% Similarity=0.429 Sum_probs=8.5
Q ss_pred HHHHHHH--HHHHHhhcCCCC
Q 002335 376 ALEKLTC--MVEERLKTNPLP 394 (935)
Q Consensus 376 ~~e~i~~--~iee~~~~r~~~ 394 (935)
++|.|.. +|+......+++
T Consensus 248 ~dEfilam~liema~sGq~lP 268 (1118)
T KOG1029|consen 248 ADEFILAMHLIEMAKSGQPLP 268 (1118)
T ss_pred HHHHHHHHHHHHHHhcCCCCC
Confidence 4456655 344333344444
No 111
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=96.69 E-value=0.0039 Score=65.07 Aligned_cols=77 Identities=17% Similarity=0.307 Sum_probs=68.4
Q ss_pred CCCCcceeeccCCCCCCHHHHHHHHHhcCCcceeeeeccCCCCCCCceEEEEeCCHHHHHHHHHHhCCceeC-CeEEEEE
Q 002335 215 EKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNID-GQELMLK 293 (935)
Q Consensus 215 ~~~~~tlfVgnLp~~vte~~L~~lFs~~G~V~~vki~~d~~tgk~kgfgFVeF~~~e~A~~Al~~Lng~~i~-gr~L~V~ 293 (935)
.++..++|+.|||..++.+.|..+|..|+....++++... .+.+||+|.+...+..|...|.|+.|- ...++|.
T Consensus 143 ~ppn~ilf~~niP~es~~e~l~~lf~qf~g~keir~i~~~-----~~iAfve~~~d~~a~~a~~~lq~~~it~~~~m~i~ 217 (221)
T KOG4206|consen 143 APPNNILFLTNIPSESESEMLSDLFEQFPGFKEIRLIPPR-----SGIAFVEFLSDRQASAAQQALQGFKITKKNTMQIT 217 (221)
T ss_pred CCCceEEEEecCCcchhHHHHHHHHhhCcccceeEeccCC-----CceeEEecchhhhhHHHhhhhccceeccCceEEec
Confidence 3567899999999999999999999999999999988753 489999999999999999999999987 7788887
Q ss_pred eec
Q 002335 294 VDQ 296 (935)
Q Consensus 294 ~a~ 296 (935)
++.
T Consensus 218 ~a~ 220 (221)
T KOG4206|consen 218 FAK 220 (221)
T ss_pred ccC
Confidence 754
No 112
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=96.67 E-value=0.003 Score=68.70 Aligned_cols=87 Identities=18% Similarity=0.286 Sum_probs=65.8
Q ss_pred CcceeeccCCCCCCHHH----H--HHHHHhcCCcceeeeeccC-CCCCCCceE--EEEeCCHHHHHHHHHHhCCceeCCe
Q 002335 218 QTKVYVGKIAPTADSDF----V--LSVLKVCGTVKSWKRAQYP-SNGTPKGFG--FCEFESAEGVLRALRLLNKFNIDGQ 288 (935)
Q Consensus 218 ~~tlfVgnLp~~vte~~----L--~~lFs~~G~V~~vki~~d~-~tgk~kgfg--FVeF~~~e~A~~Al~~Lng~~i~gr 288 (935)
..-+||-+|++.+-.++ | .++|++||.|..+.|.+.. ......+.+ ||+|...++|.+||..++|..++|+
T Consensus 114 KNLvYVigi~pkva~Ee~~~vLk~~eyFGQyGkI~KIvvNkkt~s~nst~~h~gvYITy~~kedAarcIa~vDgs~~DGr 193 (480)
T COG5175 114 KNLVYVIGIPPKVADEEVAPVLKRHEYFGQYGKIKKIVVNKKTSSLNSTASHAGVYITYSTKEDAARCIAEVDGSLLDGR 193 (480)
T ss_pred cceeEEecCCCCCCcccccccccchhhhhhccceeEEEecccccccccccccceEEEEecchHHHHHHHHHhccccccCc
Confidence 45689999999887775 2 3699999999988776643 112222323 8999999999999999999999999
Q ss_pred EEEEEeechhHHHHHHHH
Q 002335 289 ELMLKVDQATREYLERYV 306 (935)
Q Consensus 289 ~L~V~~a~~~~~~l~~~k 306 (935)
.|+..+. +.+|-..|.
T Consensus 194 ~lkatYG--TTKYCtsYL 209 (480)
T COG5175 194 VLKATYG--TTKYCTSYL 209 (480)
T ss_pred eEeeecC--chHHHHHHH
Confidence 9988764 344555554
No 113
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=96.58 E-value=0.2 Score=59.65 Aligned_cols=77 Identities=17% Similarity=0.177 Sum_probs=67.0
Q ss_pred CcceeeccCCCCCCHHHHHHHHHhcCCcceeeeeccCCCCCCCceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEe
Q 002335 218 QTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKV 294 (935)
Q Consensus 218 ~~tlfVgnLp~~vte~~L~~lFs~~G~V~~vki~~d~~tgk~kgfgFVeF~~~e~A~~Al~~Lng~~i~gr~L~V~~ 294 (935)
.+.|-+.|+|+.++-++|..+|.-|-.+-...+++.-..|...|-|.|-|++.++|.+|..-|++..|..+.|.|.+
T Consensus 867 p~V~~~~n~Pf~v~l~dI~~FF~dY~~~p~sI~~r~nd~G~pTGe~mvAfes~~eAr~A~~dl~~~~i~nr~V~l~i 943 (944)
T KOG4307|consen 867 PRVLSCNNFPFDVTLEDIVEFFNDYEPDPNSIRIRRNDDGVPTGECMVAFESQEEARRASMDLDGQKIRNRVVSLRI 943 (944)
T ss_pred CeEEEecCCCccccHHHHHHHhcccccCCCceeEeecCCCCcccceeEeecCHHHHHhhhhccccCcccceeEEEEe
Confidence 45888999999999999999999997665544444447899999999999999999999999999999999988864
No 114
>KOG1855 consensus Predicted RNA-binding protein [General function prediction only]
Probab=96.54 E-value=0.0017 Score=72.76 Aligned_cols=76 Identities=20% Similarity=0.304 Sum_probs=61.2
Q ss_pred CCCCCCCCCCcceeeccCCCCCCHHHHHHHHHhcCCcceeeeecc---CCCC--C--------CCceEEEEeCCHHHHHH
Q 002335 209 PTVTPAEKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQY---PSNG--T--------PKGFGFCEFESAEGVLR 275 (935)
Q Consensus 209 p~~~p~~~~~~tlfVgnLp~~vte~~L~~lFs~~G~V~~vki~~d---~~tg--k--------~kgfgFVeF~~~e~A~~ 275 (935)
+.......+.++|.+.|||.+-.-+.|.+||+.||.|+.|+|..- +.++ . .+-|+||+|...+.|.+
T Consensus 222 p~~~~eel~srtivaenLP~Dh~~enl~kiFg~~G~IksIRIckPgaip~d~r~~~~~~~~~~tk~~AlvEye~~~~A~K 301 (484)
T KOG1855|consen 222 PEFDEEELPSRTIVAENLPLDHSYENLSKIFGTVGSIKSIRICKPGAIPEDVRGFPKKYFELQTKECALVEYEEVEAARK 301 (484)
T ss_pred CCccccccccceEEEecCCcchHHHHHHHHhhcccceeeeeecCCCCCCcccccCCccchhhhhhhhhhhhhhhhHHHHH
Confidence 333445567899999999999888999999999999999998765 2221 1 25689999999999999
Q ss_pred HHHHhCCce
Q 002335 276 ALRLLNKFN 284 (935)
Q Consensus 276 Al~~Lng~~ 284 (935)
|.+.||...
T Consensus 302 A~e~~~~e~ 310 (484)
T KOG1855|consen 302 ARELLNPEQ 310 (484)
T ss_pred HHHhhchhh
Confidence 999886443
No 115
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=96.53 E-value=0.0044 Score=70.91 Aligned_cols=73 Identities=22% Similarity=0.383 Sum_probs=61.6
Q ss_pred CcceeeccCCCCCCHHHHHHHHHhcCCcceeeeeccCCCCCCCceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEe
Q 002335 218 QTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKV 294 (935)
Q Consensus 218 ~~tlfVgnLp~~vte~~L~~lFs~~G~V~~vki~~d~~tgk~kgfgFVeF~~~e~A~~Al~~Lng~~i~gr~L~V~~ 294 (935)
..-|-+.+|||.||+.+|..+|+-|+ |.++.+.+ .+|+..|=|||+|.+.+++..||+. +-..++.+-|.|--
T Consensus 10 ~~~vr~rGLPwsat~~ei~~Ff~~~~-I~~~~~~r--~~Gr~sGeA~Ve~~seedv~~Alkk-dR~~mg~RYIEVf~ 82 (510)
T KOG4211|consen 10 AFEVRLRGLPWSATEKEILDFFSNCG-IENLEIPR--RNGRPSGEAYVEFTSEEDVEKALKK-DRESMGHRYIEVFT 82 (510)
T ss_pred ceEEEecCCCccccHHHHHHHHhcCc-eeEEEEec--cCCCcCcceEEEeechHHHHHHHHh-hHHHhCCceEEEEc
Confidence 44566789999999999999999984 77766665 4899999999999999999999984 77777888887743
No 116
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.52 E-value=0.42 Score=60.12 Aligned_cols=12 Identities=25% Similarity=0.393 Sum_probs=6.2
Q ss_pred HHHHHHHHHhCC
Q 002335 271 EGVLRALRLLNK 282 (935)
Q Consensus 271 e~A~~Al~~Lng 282 (935)
+++.+-|..|..
T Consensus 975 ~d~~kRL~~L~~ 986 (1049)
T KOG0307|consen 975 KDVTKRLEILFD 986 (1049)
T ss_pred HHHHHHHHHHHH
Confidence 455555555543
No 117
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=96.52 E-value=0.0024 Score=67.09 Aligned_cols=69 Identities=19% Similarity=0.334 Sum_probs=61.7
Q ss_pred CCCcceeeccCCCCCCHHHHHHHHHhcCCcceeeeeccCCCCCCCceEEEEeCCHHHHHHHHHHhCCceeCCeEEEE
Q 002335 216 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELML 292 (935)
Q Consensus 216 ~~~~tlfVgnLp~~vte~~L~~lFs~~G~V~~vki~~d~~tgk~kgfgFVeF~~~e~A~~Al~~Lng~~i~gr~L~V 292 (935)
...+.|+|.|++..+...+|..+|..||.+....+ ..+|+||+|...+++.+|+..|+|..|.|+.|.|
T Consensus 97 ~s~~r~~~~~~~~r~~~qdl~d~~~~~g~~~~~~~--------~~~~~~v~Fs~~~da~ra~~~l~~~~~~~~~l~~ 165 (216)
T KOG0106|consen 97 RTHFRLIVRNLSLRVSWQDLKDHFRPAGEVTYVDA--------RRNFAFVEFSEQEDAKRALEKLDGKKLNGRRISV 165 (216)
T ss_pred cccceeeeccchhhhhHHHHhhhhcccCCCchhhh--------hccccceeehhhhhhhhcchhccchhhcCceeee
Confidence 44678999999999999999999999999954433 2489999999999999999999999999999998
No 118
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.25 E-value=0.64 Score=58.52 Aligned_cols=9 Identities=22% Similarity=0.608 Sum_probs=3.5
Q ss_pred HHHHHHhcC
Q 002335 235 VLSVLKVCG 243 (935)
Q Consensus 235 L~~lFs~~G 243 (935)
+..+..+|+
T Consensus 955 ~e~~~~r~~ 963 (1049)
T KOG0307|consen 955 LEELLQRCS 963 (1049)
T ss_pred HHHHHHHhh
Confidence 333333443
No 119
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=96.22 E-value=0.01 Score=68.44 Aligned_cols=64 Identities=20% Similarity=0.362 Sum_probs=60.2
Q ss_pred CCCcceeeccCCCCCCHHHHHHHHH-hcCCcceeeeeccCCCCCCCceEEEEeCCHHHHHHHHHH
Q 002335 216 KPQTKVYVGKIAPTADSDFVLSVLK-VCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRL 279 (935)
Q Consensus 216 ~~~~tlfVgnLp~~vte~~L~~lFs-~~G~V~~vki~~d~~tgk~kgfgFVeF~~~e~A~~Al~~ 279 (935)
.+.+|||||+||.-++..+|..||. .||.|..+-|=+|++-+..+|-|=|+|.+..+..+||.+
T Consensus 368 DprrTVFVGgvprpl~A~eLA~imd~lyGgV~yaGIDtD~k~KYPkGaGRVtFsnqqsYi~AIsa 432 (520)
T KOG0129|consen 368 DPRRTVFVGGLPRPLTAEELAMIMEDLFGGVLYVGIDTDPKLKYPKGAGRVTFSNQQAYIKAISA 432 (520)
T ss_pred CccceEEecCCCCcchHHHHHHHHHHhcCceEEEEeccCcccCCCCCcceeeecccHHHHHHHhh
Confidence 5679999999999999999999998 899999999999988889999999999999999999975
No 120
>KOG2891 consensus Surface glycoprotein [General function prediction only]
Probab=95.73 E-value=1.2 Score=47.74 Aligned_cols=80 Identities=20% Similarity=0.403 Sum_probs=50.7
Q ss_pred CcceeeccCCCC------------CCHHHHHHHHHhcCCcceeeeecc-C----CCCCC-----CceEE---------EE
Q 002335 218 QTKVYVGKIAPT------------ADSDFVLSVLKVCGTVKSWKRAQY-P----SNGTP-----KGFGF---------CE 266 (935)
Q Consensus 218 ~~tlfVgnLp~~------------vte~~L~~lFs~~G~V~~vki~~d-~----~tgk~-----kgfgF---------Ve 266 (935)
..|||+.+||-. -+++-|+..|..||.|..|.|... + -+|+. .|||| |.
T Consensus 149 pdti~la~ip~kwf~lkedg~~dlpse~rlr~a~eafg~ir~vdipicdplr~~mn~kisgiq~~gfg~g~dlffeayvq 228 (445)
T KOG2891|consen 149 PDTIHLAGIPCKWFALKEDGSEDLPSEDRLRKAFEAFGEIRNVDIPICDPLREEMNGKISGIQFHGFGFGGDLFFEAYVQ 228 (445)
T ss_pred CCceeecCCcceeeeecccccccCChHHHHHHHHHHhccceecCCcccchhHHHhcCccccceeeccccCcchhHHHHHH
Confidence 346666666532 356789999999999999876432 2 24443 45554 55
Q ss_pred eCCHHHHHHHHHHhCCcee----CCe----EEEEEeech
Q 002335 267 FESAEGVLRALRLLNKFNI----DGQ----ELMLKVDQA 297 (935)
Q Consensus 267 F~~~e~A~~Al~~Lng~~i----~gr----~L~V~~a~~ 297 (935)
|....+...|+.+|.|..+ +|+ .++|+|+.+
T Consensus 229 fmeykgfa~amdalr~~k~akk~d~~ffqanvkvdfdrs 267 (445)
T KOG2891|consen 229 FMEYKGFAQAMDALRGMKLAKKGDDGFFQANVKVDFDRS 267 (445)
T ss_pred HHHHHhHHHHHHHHhcchHHhhcCCcccccccccccchh
Confidence 6666677788888887643 333 355555554
No 121
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=95.46 E-value=0.048 Score=53.89 Aligned_cols=71 Identities=20% Similarity=0.315 Sum_probs=51.8
Q ss_pred CCCCcceeeccCC------CCCCHH---HHHHHHHhcCCcceeeeeccCCCCCCCceEEEEeCCHHHHHHHHHHhCCcee
Q 002335 215 EKPQTKVYVGKIA------PTADSD---FVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNI 285 (935)
Q Consensus 215 ~~~~~tlfVgnLp------~~vte~---~L~~lFs~~G~V~~vki~~d~~tgk~kgfgFVeF~~~e~A~~Al~~Lng~~i 285 (935)
+++..||.|.-+. ..+.+. .|...|..||.|.-++++. +.-+|+|.+-.+|.+|+. |+|..|
T Consensus 24 GPpDaTVvVsv~~~~~~e~~~Fdd~l~~~ll~~~~~~GevvLvRfv~--------~~mwVTF~dg~sALaals-~dg~~v 94 (146)
T PF08952_consen 24 GPPDATVVVSVDSPSEDEDSSFDDNLMDELLQKFAQYGEVVLVRFVG--------DTMWVTFRDGQSALAALS-LDGIQV 94 (146)
T ss_dssp --TT-EEEEEECS-SCCCCHS--HHHHHHHHHHHHCCS-ECEEEEET--------TCEEEEESSCHHHHHHHH-GCCSEE
T ss_pred CCCCceEEEEecCCCccccCcCCHHHHHHHHHHHHhCCceEEEEEeC--------CeEEEEECccHHHHHHHc-cCCcEE
Confidence 3445666666555 123332 6777888999988887765 468999999999999999 799999
Q ss_pred CCeEEEEEe
Q 002335 286 DGQELMLKV 294 (935)
Q Consensus 286 ~gr~L~V~~ 294 (935)
+|+.|.|.+
T Consensus 95 ~g~~l~i~L 103 (146)
T PF08952_consen 95 NGRTLKIRL 103 (146)
T ss_dssp TTEEEEEEE
T ss_pred CCEEEEEEe
Confidence 999999975
No 122
>KOG1984 consensus Vesicle coat complex COPII, subunit SFB3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.44 E-value=1.7 Score=53.69 Aligned_cols=7 Identities=43% Similarity=0.899 Sum_probs=3.3
Q ss_pred HHHHHHH
Q 002335 878 LVDYIVS 884 (935)
Q Consensus 878 lv~~i~~ 884 (935)
-|||+|.
T Consensus 991 Y~dyL~~ 997 (1007)
T KOG1984|consen 991 YVDYLCE 997 (1007)
T ss_pred cchHHHH
Confidence 3455444
No 123
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=95.25 E-value=0.039 Score=64.69 Aligned_cols=63 Identities=21% Similarity=0.212 Sum_probs=52.2
Q ss_pred HHHHHHhcCCcceeeeecc-C--CCCCCCceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEeech
Q 002335 235 VLSVLKVCGTVKSWKRAQY-P--SNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVDQA 297 (935)
Q Consensus 235 L~~lFs~~G~V~~vki~~d-~--~tgk~kgfgFVeF~~~e~A~~Al~~Lng~~i~gr~L~V~~a~~ 297 (935)
++.-++.||.|..|.|.+. . ...-..|.-||+|.+.+++.+|+..|+|..|+|+.|...|-..
T Consensus 426 vr~ec~k~g~v~~v~ipr~~~~~~~~~G~GkVFVefas~ed~qrA~~~L~GrKF~nRtVvtsYyde 491 (500)
T KOG0120|consen 426 VRTECAKFGAVRSVEIPRPYPDENPVPGTGKVFVEFADTEDSQRAMEELTGRKFANRTVVASYYDE 491 (500)
T ss_pred HHHHhcccCceeEEecCCCCCCCCcCCCcccEEEEecChHHHHHHHHHccCceeCCcEEEEEecCH
Confidence 4445668999999998876 2 3345678899999999999999999999999999998877544
No 124
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=95.18 E-value=0.049 Score=60.09 Aligned_cols=78 Identities=13% Similarity=0.179 Sum_probs=61.1
Q ss_pred CCcceeeccCCC----CCCH-------HHHHHHHHhcCCcceeeeeccCCCCCCCceEEEEeCCHHHHHHHHHHhCCcee
Q 002335 217 PQTKVYVGKIAP----TADS-------DFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNI 285 (935)
Q Consensus 217 ~~~tlfVgnLp~----~vte-------~~L~~lFs~~G~V~~vki~~d~~tgk~kgfgFVeF~~~e~A~~Al~~Lng~~i 285 (935)
..++|.|.||=. ..+. ++|..-+.+||.|.+|.|.- ..+.|.+-|.|.+.+.|..||..|+|..|
T Consensus 264 ~~~tVi~kn~Ftp~~~~~~~~l~~dlkedl~eec~K~G~v~~vvv~d----~hPdGvvtV~f~n~eeA~~ciq~m~GR~f 339 (382)
T KOG1548|consen 264 ADRTVILKNMFTPEDFEKNPDLLNDLKEDLTEECEKFGQVRKVVVYD----RHPDGVVTVSFRNNEEADQCIQTMDGRWF 339 (382)
T ss_pred CCcEEEeeecCCHHHhccCHHHHHHHHHHHHHHHHHhCCcceEEEec----cCCCceeEEEeCChHHHHHHHHHhcCeee
Confidence 357888888632 2221 34555678999999998753 34568999999999999999999999999
Q ss_pred CCeEEEEEeechh
Q 002335 286 DGQELMLKVDQAT 298 (935)
Q Consensus 286 ~gr~L~V~~a~~~ 298 (935)
+||+|...+...+
T Consensus 340 dgRql~A~i~DG~ 352 (382)
T KOG1548|consen 340 DGRQLTASIWDGK 352 (382)
T ss_pred cceEEEEEEeCCc
Confidence 9999998776665
No 125
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=95.17 E-value=0.032 Score=62.53 Aligned_cols=79 Identities=15% Similarity=0.221 Sum_probs=66.6
Q ss_pred CCCcceeeccCCCCCCHHHHHHHHHhcCCcceeeeeccCCCCCCCceEEEEeCCHHHHHHHHHHhCCceeCCe-EEEEEe
Q 002335 216 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQ-ELMLKV 294 (935)
Q Consensus 216 ~~~~tlfVgnLp~~vte~~L~~lFs~~G~V~~vki~~d~~tgk~kgfgFVeF~~~e~A~~Al~~Lng~~i~gr-~L~V~~ 294 (935)
+++.+|...|||..|++++|+.+|...|.+...... -++.+.++.+.|.+.+.|.-|+-.++.+.+++. .|+|.|
T Consensus 412 PpsatlHlsnip~svsee~lk~~f~~~g~~vkafkf----f~kd~kmal~q~~sveeA~~ali~~hnh~lgen~hlRvSF 487 (492)
T KOG1190|consen 412 PPSATLHLSNIPPSVSEEDLKNLFQEPGGQVKAFKF----FQKDRKMALPQLESVEEAIQALIDLHNHYLGENHHLRVSF 487 (492)
T ss_pred CchhheeeccCCcccchhHHHHhhhcCCceEEeeee----cCCCcceeecccCChhHhhhhccccccccCCCCceEEEEe
Confidence 456799999999999999999999988876554432 245568999999999999999999999999865 899999
Q ss_pred echh
Q 002335 295 DQAT 298 (935)
Q Consensus 295 a~~~ 298 (935)
+..+
T Consensus 488 Sks~ 491 (492)
T KOG1190|consen 488 SKST 491 (492)
T ss_pred eccc
Confidence 8753
No 126
>PTZ00266 NIMA-related protein kinase; Provisional
Probab=95.16 E-value=0.082 Score=67.50 Aligned_cols=22 Identities=14% Similarity=0.219 Sum_probs=11.9
Q ss_pred CCCChhhhhhhcccccccchhh
Q 002335 833 IPKTKEELFSYEINWAVYDKHE 854 (935)
Q Consensus 833 ip~~k~~lf~~~i~w~~~~~~~ 854 (935)
|..-|..|++-.++-..|.+..
T Consensus 874 ~~~~~~~~~~~~~~~~~~~~~~ 895 (1021)
T PTZ00266 874 INAKKASIYNNTCDEGTLSKKG 895 (1021)
T ss_pred hhhhhhhhhhhccccccccccC
Confidence 4445556665555555555443
No 127
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=94.86 E-value=0.01 Score=71.85 Aligned_cols=79 Identities=14% Similarity=0.170 Sum_probs=70.7
Q ss_pred CcceeeccCCCCCCHHHHHHHHHhcCCcceeeeeccCCCCCCCceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEeech
Q 002335 218 QTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVDQA 297 (935)
Q Consensus 218 ~~tlfVgnLp~~vte~~L~~lFs~~G~V~~vki~~d~~tgk~kgfgFVeF~~~e~A~~Al~~Lng~~i~gr~L~V~~a~~ 297 (935)
...+||.|+++.+|.++|+.||+.+|++.+..++.. ..|+.+|.+||.|.+..++.+++..+.+..+..+.+.|.+...
T Consensus 736 K~~v~i~g~pf~gt~e~~k~l~~~~gn~~~~~~vt~-r~gkpkg~a~v~y~~ea~~s~~~~s~d~~~~rE~~~~v~vsnp 814 (881)
T KOG0128|consen 736 KISVAISGPPFQGTKEELKSLASKTGNVTSLRLVTV-RAGKPKGKARVDYNTEADASRKVASVDVAGKRENNGEVQVSNP 814 (881)
T ss_pred hhhhheeCCCCCCchHHHHhhccccCCccccchhhh-hccccccceeccCCCcchhhhhcccchhhhhhhcCccccccCC
Confidence 567999999999999999999999999999998887 5999999999999999999999988888888777777766444
No 128
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=94.60 E-value=0.065 Score=61.67 Aligned_cols=74 Identities=19% Similarity=0.178 Sum_probs=59.5
Q ss_pred CcceeeccCCCCCCHHHHHHHHHhcCCcce-eeeeccCCCCCCCceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEE
Q 002335 218 QTKVYVGKIAPTADSDFVLSVLKVCGTVKS-WKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLK 293 (935)
Q Consensus 218 ~~tlfVgnLp~~vte~~L~~lFs~~G~V~~-vki~~d~~tgk~kgfgFVeF~~~e~A~~Al~~Lng~~i~gr~L~V~ 293 (935)
...|-+.+||+.|++.+|.++|+-.-.|.. +.++.+ ..|+++|=+||.|++.+.|+.||.. |-..|+-+-|.|-
T Consensus 103 d~vVRLRGLPfscte~dI~~FFaGL~Iv~~gi~l~~d-~rgR~tGEAfVqF~sqe~ae~Al~r-hre~iGhRYIEvF 177 (510)
T KOG4211|consen 103 DGVVRLRGLPFSCTEEDIVEFFAGLEIVPDGILLPMD-QRGRPTGEAFVQFESQESAEIALGR-HRENIGHRYIEVF 177 (510)
T ss_pred CceEEecCCCccCcHHHHHHHhcCCcccccceeeecc-CCCCcccceEEEecCHHHHHHHHHH-HHHhhccceEEee
Confidence 456778899999999999999986544444 445555 5788999999999999999999975 6677888877774
No 129
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=94.26 E-value=0.0072 Score=73.11 Aligned_cols=76 Identities=13% Similarity=0.192 Sum_probs=63.5
Q ss_pred CCcceeeccCCCCCCHHHHHHHHHhcCCcceeeeeccCCCCCCCceEEEEeCCHHHHHHHHHHhCCceeCCeEEEE
Q 002335 217 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELML 292 (935)
Q Consensus 217 ~~~tlfVgnLp~~vte~~L~~lFs~~G~V~~vki~~d~~tgk~kgfgFVeF~~~e~A~~Al~~Lng~~i~gr~L~V 292 (935)
..+++||.||+..+.+.+|...|+.+|.|..+.+......++.+|+|||+|.+.+.+.+||....++.++...+.|
T Consensus 666 ~~~~~fvsnl~~~~~~~dl~~~~~~~~~~e~vqi~~h~n~~~~rG~~Y~~F~~~~~~~aaV~f~d~~~~gK~~v~i 741 (881)
T KOG0128|consen 666 DLIKIFVSNLSPKMSEEDLSERFSPSGTIEVVQIVIHKNEKRFRGKAYVEFLKPEHAGAAVAFRDSCFFGKISVAI 741 (881)
T ss_pred HHHHHHHhhcchhhcCchhhhhcCccchhhhHHHHHHhhccccccceeeEeecCCchhhhhhhhhhhhhhhhhhhe
Confidence 4578999999999999999999999998888877655578999999999999999999999876655555433333
No 130
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=94.25 E-value=0.074 Score=59.42 Aligned_cols=82 Identities=15% Similarity=0.170 Sum_probs=63.1
Q ss_pred cceeeccCCCCCCHHHHHHHHHhcCCcceeeeeccCCC---CCCCceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEee
Q 002335 219 TKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSN---GTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVD 295 (935)
Q Consensus 219 ~tlfVgnLp~~vte~~L~~lFs~~G~V~~vki~~d~~t---gk~kgfgFVeF~~~e~A~~Al~~Lng~~i~gr~L~V~~a 295 (935)
..|.|.||.+.++.+.|+.||+..|.|..+.|+....+ .-....|||.|.+...+..|-.+.|-+.|+--.|+|-+.
T Consensus 8 ~vIqvanispsat~dqm~tlFg~lGkI~elrlyp~~~d~~~pv~sRtcyVkf~d~~sv~vaQhLtntvfvdraliv~p~~ 87 (479)
T KOG4676|consen 8 GVIQVANISPSATKDQMQTLFGNLGKIPELRLYPNVDDSKIPVISRTCYVKFLDSQSVTVAQHLTNTVFVDRALIVRPYG 87 (479)
T ss_pred ceeeecccCchhhHHHHHHHHhhccccccccccCCCCCccCcceeeeEEEeccCCcceeHHhhhccceeeeeeEEEEecC
Confidence 47999999999999999999999999999988764322 233468999999999998887765655555555566665
Q ss_pred chhHH
Q 002335 296 QATRE 300 (935)
Q Consensus 296 ~~~~~ 300 (935)
.....
T Consensus 88 ~~~~p 92 (479)
T KOG4676|consen 88 DEVIP 92 (479)
T ss_pred CCCCc
Confidence 55433
No 131
>PHA03378 EBNA-3B; Provisional
Probab=94.00 E-value=1.4 Score=52.73 Aligned_cols=7 Identities=29% Similarity=0.667 Sum_probs=2.8
Q ss_pred HHhcCCc
Q 002335 239 LKVCGTV 245 (935)
Q Consensus 239 Fs~~G~V 245 (935)
+.+.|.|
T Consensus 883 ~~~~g~~ 889 (991)
T PHA03378 883 MRQLGSV 889 (991)
T ss_pred hhhcCCc
Confidence 3334443
No 132
>KOG1996 consensus mRNA splicing factor [RNA processing and modification]
Probab=93.97 E-value=0.13 Score=55.66 Aligned_cols=64 Identities=22% Similarity=0.135 Sum_probs=51.3
Q ss_pred HHHHHHHHhcCCcceeeeeccCCCCC-CCceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEeec
Q 002335 233 DFVLSVLKVCGTVKSWKRAQYPSNGT-PKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVDQ 296 (935)
Q Consensus 233 ~~L~~lFs~~G~V~~vki~~d~~tgk-~kgfgFVeF~~~e~A~~Al~~Lng~~i~gr~L~V~~a~ 296 (935)
+++..-+.+||.|..|.|.-.+.-.- -.---||+|+..++|.+|+.-|||..|+|+.+...|-.
T Consensus 301 de~keEceKyg~V~~viifeip~~p~deavRiFveF~r~e~aiKA~VdlnGRyFGGr~v~A~Fyn 365 (378)
T KOG1996|consen 301 DETKEECEKYGKVGNVIIFEIPSQPEDEAVRIFVEFERVESAIKAVVDLNGRYFGGRVVSACFYN 365 (378)
T ss_pred HHHHHHHHhhcceeeEEEEecCCCccchhheeeeeeccHHHHHHHHHhcCCceecceeeeheecc
Confidence 36777889999999998776642221 12458999999999999999999999999998877644
No 133
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=93.92 E-value=0.051 Score=66.39 Aligned_cols=83 Identities=12% Similarity=0.227 Sum_probs=70.3
Q ss_pred CCCCcceeeccCCCCCCHHHHHHHHHhcCCcceeeeeccCCCCCCCceEEEEeCCHHHHHHHHHHhCCceeCC--eEEEE
Q 002335 215 EKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDG--QELML 292 (935)
Q Consensus 215 ~~~~~tlfVgnLp~~vte~~L~~lFs~~G~V~~vki~~d~~tgk~kgfgFVeF~~~e~A~~Al~~Lng~~i~g--r~L~V 292 (935)
....+.+|||+|..++....|...|..||.|..|.+-. ..-|++|.|.+...+..|+..|.|+.|+| +.|.|
T Consensus 452 st~ttr~~sgglg~w~p~~~l~r~fd~fGpir~Idy~h------gq~yayi~yes~~~aq~a~~~~rgap~G~P~~r~rv 525 (975)
T KOG0112|consen 452 STPTTRLQSGGLGPWSPVSRLNREFDRFGPIRIIDYRH------GQPYAYIQYESPPAAQAATHDMRGAPLGGPPRRLRV 525 (975)
T ss_pred cccceeeccCCCCCCChHHHHHHHhhccCcceeeeccc------CCcceeeecccCccchhhHHHHhcCcCCCCCccccc
Confidence 45578899999999999999999999999998876533 24799999999999999999999999985 66999
Q ss_pred EeechhHHHHH
Q 002335 293 KVDQATREYLE 303 (935)
Q Consensus 293 ~~a~~~~~~l~ 303 (935)
+|+..-..+-.
T Consensus 526 dla~~~~~~Pq 536 (975)
T KOG0112|consen 526 DLASPPGATPQ 536 (975)
T ss_pred ccccCCCCChh
Confidence 98776544433
No 134
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=93.90 E-value=0.12 Score=60.01 Aligned_cols=78 Identities=23% Similarity=0.359 Sum_probs=52.5
Q ss_pred CCCcceeeccCCCCCCHHHHHHHHHhcCCcc-eeeeeccC-CCCCCCc---eEEEEeCCHHHHHHHHHHhCCceeCCeEE
Q 002335 216 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVK-SWKRAQYP-SNGTPKG---FGFCEFESAEGVLRALRLLNKFNIDGQEL 290 (935)
Q Consensus 216 ~~~~tlfVgnLp~~vte~~L~~lFs~~G~V~-~vki~~d~-~tgk~kg---fgFVeF~~~e~A~~Al~~Lng~~i~gr~L 290 (935)
.-.+.||||+||++++++.|...|..||.|. +|-..... .---.+| |.|+.|++..++..-|.++. .+...+
T Consensus 257 ~~S~KVFvGGlp~dise~~i~~~F~~FGs~~VdWP~k~~~~~~~ppkGs~~YvflvFe~E~sV~~Ll~aC~---~~~~~~ 333 (520)
T KOG0129|consen 257 RYSRKVFVGGLPWDITEAQINASFGQFGSVKVDWPGKANSRGRAPPKGSYGYVFLVFEDERSVQSLLSACS---EGEGNY 333 (520)
T ss_pred ccccceeecCCCccccHHHHHhhcccccceEeecCCCccccccCCCCCcccEEEEEecchHHHHHHHHHHh---hcccce
Confidence 3468999999999999999999999999864 44321110 1112345 99999999888776555443 244444
Q ss_pred EEEeec
Q 002335 291 MLKVDQ 296 (935)
Q Consensus 291 ~V~~a~ 296 (935)
.+++..
T Consensus 334 yf~vss 339 (520)
T KOG0129|consen 334 YFKVSS 339 (520)
T ss_pred EEEEec
Confidence 444433
No 135
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=93.58 E-value=0.13 Score=47.94 Aligned_cols=77 Identities=19% Similarity=0.132 Sum_probs=50.4
Q ss_pred cceeeccCCCCCCHHHHHHHHHhcCCcceeeeeccC-------CCCCCCceEEEEeCCHHHHHHHHHHhCCceeCCeE-E
Q 002335 219 TKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYP-------SNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQE-L 290 (935)
Q Consensus 219 ~tlfVgnLp~~vte~~L~~lFs~~G~V~~vki~~d~-------~tgk~kgfgFVeF~~~e~A~~Al~~Lng~~i~gr~-L 290 (935)
+.|.|-+.|.. .-..+...|+.||.|.+..-+... .......+-.|.|.+..+|.+||.. ||..|+|.. +
T Consensus 7 ~wVtVFGfp~~-~~~~Vl~~F~~~G~Ile~~~~~~~~~~~~~~~~~~~~NWi~I~Y~~~~~A~rAL~~-NG~i~~g~~mv 84 (100)
T PF05172_consen 7 TWVTVFGFPPS-ASNQVLRHFSSFGTILEHFEVLRSSSGINPYPIPSGGNWIHITYDNPLSAQRALQK-NGTIFSGSLMV 84 (100)
T ss_dssp CEEEEE---GG-GHHHHHHHHHCCS-EECEEGGG----------E-CCTTEEEEEESSHHHHHHHHTT-TTEEETTCEEE
T ss_pred eEEEEEccCHH-HHHHHHHHHHhcceEEEeecccccccccccccCCCCCCEEEEECCCHHHHHHHHHh-CCeEEcCcEEE
Confidence 44666667765 445788899999999887521110 0112347889999999999999995 999999865 4
Q ss_pred EEEeech
Q 002335 291 MLKVDQA 297 (935)
Q Consensus 291 ~V~~a~~ 297 (935)
-|.+...
T Consensus 85 GV~~~~~ 91 (100)
T PF05172_consen 85 GVKPCDP 91 (100)
T ss_dssp EEEE-HH
T ss_pred EEEEcHH
Confidence 5666543
No 136
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=93.43 E-value=0.29 Score=49.74 Aligned_cols=70 Identities=19% Similarity=0.283 Sum_probs=60.5
Q ss_pred CCCcceeeccCCCCCCHHHHHHHHHhcCCcceeeeeccCCCCCCCceEEEEeCCHHHHHHHHHHhCCceeC--CeEEEE
Q 002335 216 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNID--GQELML 292 (935)
Q Consensus 216 ~~~~tlfVgnLp~~vte~~L~~lFs~~G~V~~vki~~d~~tgk~kgfgFVeF~~~e~A~~Al~~Lng~~i~--gr~L~V 292 (935)
.....|.|.+||...+..+|+..+...|.|....+.+| |+|.|+|...++..-||+.|....+. |-...+
T Consensus 113 rSe~RVvVsGLp~SgSWQDLKDHmReaGdvCfadv~rD-------g~GvV~~~r~eDMkYAvr~ld~~~~~seGe~~yi 184 (241)
T KOG0105|consen 113 RSEYRVVVSGLPPSGSWQDLKDHMREAGDVCFADVQRD-------GVGVVEYLRKEDMKYAVRKLDDQKFRSEGETAYI 184 (241)
T ss_pred ccceeEEEecCCCCCchHHHHHHHHhhCCeeeeeeecc-------cceeeeeeehhhHHHHHHhhccccccCcCcEeeE
Confidence 34578999999999999999999999999999999888 79999999999999999999876654 444443
No 137
>KOG0115 consensus RNA-binding protein p54nrb (RRM superfamily) [RNA processing and modification]
Probab=93.40 E-value=0.07 Score=56.80 Aligned_cols=63 Identities=19% Similarity=0.305 Sum_probs=57.7
Q ss_pred cceeeccCCCCCCHHHHHHHHHhcCCcceeeeeccCCCCCCCceEEEEeCCHHHHHHHHHHhCC
Q 002335 219 TKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNK 282 (935)
Q Consensus 219 ~tlfVgnLp~~vte~~L~~lFs~~G~V~~vki~~d~~tgk~kgfgFVeF~~~e~A~~Al~~Lng 282 (935)
..|||.||...++.+.|..-|+.||.|....++.| ..|+..+=|+|+|...-.+..|++.++-
T Consensus 32 a~l~V~nl~~~~sndll~~~f~~fg~~e~av~~vD-~r~k~t~eg~v~~~~k~~a~~a~rr~~~ 94 (275)
T KOG0115|consen 32 AELYVVNLMQGASNDLLEQAFRRFGPIERAVAKVD-DRGKPTREGIVEFAKKPNARKAARRCRE 94 (275)
T ss_pred ceEEEEecchhhhhHHHHHhhhhcCccchheeeec-ccccccccchhhhhcchhHHHHHHHhcc
Confidence 67999999999999999999999999998877777 6889999999999999999999988853
No 138
>KOG1984 consensus Vesicle coat complex COPII, subunit SFB3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.10 E-value=12 Score=46.58 Aligned_cols=8 Identities=13% Similarity=0.372 Sum_probs=3.3
Q ss_pred CCHHHHHH
Q 002335 230 ADSDFVLS 237 (935)
Q Consensus 230 vte~~L~~ 237 (935)
+|.+.+..
T Consensus 299 ~T~Dl~~a 306 (1007)
T KOG1984|consen 299 CTNDLLKA 306 (1007)
T ss_pred ccHhHHHh
Confidence 44444443
No 139
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]
Probab=92.86 E-value=0.17 Score=57.14 Aligned_cols=77 Identities=14% Similarity=0.245 Sum_probs=60.5
Q ss_pred cceeeccCCCCCCHHHHHHHHHhcC-CcceeeeeccCCCCCCCceEEEEeCCHHHHHHHHHHhCCc-eeCCeEEEEEeec
Q 002335 219 TKVYVGKIAPTADSDFVLSVLKVCG-TVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKF-NIDGQELMLKVDQ 296 (935)
Q Consensus 219 ~tlfVgnLp~~vte~~L~~lFs~~G-~V~~vki~~d~~tgk~kgfgFVeF~~~e~A~~Al~~Lng~-~i~gr~L~V~~a~ 296 (935)
..+|||||.+.++..+|..+|+..- .+..-.+++. ||+||.+.+..-+.+|+..|+|. ++.|..+.|....
T Consensus 2 nklyignL~p~~~psdl~svfg~ak~~~~g~fl~k~-------gyafvd~pdq~wa~kaie~~sgk~elqGkr~e~~~sv 74 (584)
T KOG2193|consen 2 NKLYIGNLSPQVTPSDLESVFGDAKIPGSGQFLVKS-------GYAFVDCPDQQWANKAIETLSGKVELQGKRQEVEHSV 74 (584)
T ss_pred CcccccccCCCCChHHHHHHhccccCCCCcceeeec-------ceeeccCCchhhhhhhHHhhchhhhhcCceeeccchh
Confidence 4689999999999999999997541 1122233443 89999999999999999999984 6889999998877
Q ss_pred hhHHHH
Q 002335 297 ATREYL 302 (935)
Q Consensus 297 ~~~~~l 302 (935)
..+...
T Consensus 75 ~kkqrs 80 (584)
T KOG2193|consen 75 PKKQRS 80 (584)
T ss_pred hHHHHh
Confidence 654433
No 140
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=92.82 E-value=0.18 Score=41.47 Aligned_cols=52 Identities=17% Similarity=0.245 Sum_probs=39.9
Q ss_pred cceeeccCCCCCCHHHHHHHHHhcCCcceeeeeccCCCCCCCceEEEEeCCHHHHHHHH
Q 002335 219 TKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRAL 277 (935)
Q Consensus 219 ~tlfVgnLp~~vte~~L~~lFs~~G~V~~vki~~d~~tgk~kgfgFVeF~~~e~A~~Al 277 (935)
+.|-|.+.+....+ .+...|..||.|..+.+.. ...+.||.|.+..+|++||
T Consensus 2 ~wI~V~Gf~~~~~~-~vl~~F~~fGeI~~~~~~~------~~~~~~l~y~~~~~ae~Al 53 (53)
T PF14605_consen 2 TWISVSGFPPDLAE-EVLEHFASFGEIVDIYVPE------STNWMYLKYKSRKDAEKAL 53 (53)
T ss_pred cEEEEEeECchHHH-HHHHHHHhcCCEEEEEcCC------CCcEEEEEECCHHHHHhhC
Confidence 45667777765554 4555888999999987752 2479999999999999986
No 141
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=92.52 E-value=0.037 Score=67.55 Aligned_cols=80 Identities=10% Similarity=0.096 Sum_probs=68.1
Q ss_pred CCCcceeeccCCCCCCHHHHHHHHHhcCCcceeeeeccCCCCCCCceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEee
Q 002335 216 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVD 295 (935)
Q Consensus 216 ~~~~tlfVgnLp~~vte~~L~~lFs~~G~V~~vki~~d~~tgk~kgfgFVeF~~~e~A~~Al~~Lng~~i~gr~L~V~~a 295 (935)
...+|||+|||...+++.+|+.+|..||.|..|.|-+- .-+..-.||||.|.+...+-.|+..+.|..|+...+++.+.
T Consensus 370 ~atrTLf~Gnl~~kl~eseiR~af~e~gkve~VDiKtP-~~~~esa~~f~~~~n~dmtp~ak~e~s~~~I~~g~~r~glG 448 (975)
T KOG0112|consen 370 RATRTLFLGNLDSKLTESEIRPAFDESGKVEEVDIKTP-HIKTESAYAFVSLLNTDMTPSAKFEESGPLIGNGTHRIGLG 448 (975)
T ss_pred hhhhhhhhcCcccchhhhhhhhhhhhhccccccccccC-CCCcccchhhhhhhccccCcccchhhcCCccccCccccccc
Confidence 44789999999999999999999999999999987554 24555689999999999999999999998888777776665
Q ss_pred c
Q 002335 296 Q 296 (935)
Q Consensus 296 ~ 296 (935)
.
T Consensus 449 ~ 449 (975)
T KOG0112|consen 449 Q 449 (975)
T ss_pred c
Confidence 3
No 142
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=91.77 E-value=0.07 Score=59.00 Aligned_cols=77 Identities=21% Similarity=0.290 Sum_probs=59.5
Q ss_pred cceeeccCCCCCCHHHHH---HHHHhcCCcceeeeeccCC----CCCCCceEEEEeCCHHHHHHHHHHhCCceeCCeEEE
Q 002335 219 TKVYVGKIAPTADSDFVL---SVLKVCGTVKSWKRAQYPS----NGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELM 291 (935)
Q Consensus 219 ~tlfVgnLp~~vte~~L~---~lFs~~G~V~~vki~~d~~----tgk~kgfgFVeF~~~e~A~~Al~~Lng~~i~gr~L~ 291 (935)
+-+||-+|+..+-++.+. ..|++||.|..|.+..++. .|.+ .-++|+|...++|.+||..++|+.++|+.|+
T Consensus 78 nlvyvvgl~~~~ade~~l~~~eyfgqygki~ki~~~~~~S~~s~~~~~-~s~yITy~~~eda~rci~~v~g~~~dg~~lk 156 (327)
T KOG2068|consen 78 NLVYVVGLPLDLADESVLERTEYFGQYGKINKIVKNKDPSSSSSSGGT-CSVYITYEEEEDADRCIDDVDGFVDDGRALK 156 (327)
T ss_pred hhhhhhCCCccccchhhhhCcccccccccceEEeecCCcccccCCCCC-CcccccccchHhhhhHHHHhhhHHhhhhhhH
Confidence 457888898877666443 4899999999988877652 2222 2389999999999999999999999999866
Q ss_pred EEeec
Q 002335 292 LKVDQ 296 (935)
Q Consensus 292 V~~a~ 296 (935)
..+..
T Consensus 157 a~~gt 161 (327)
T KOG2068|consen 157 ASLGT 161 (327)
T ss_pred HhhCC
Confidence 55433
No 143
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=91.73 E-value=0.15 Score=56.62 Aligned_cols=71 Identities=23% Similarity=0.167 Sum_probs=58.5
Q ss_pred eccCCCCCCHHHHHHHHHhcCCcceeeeeccCCCCCCCceEEEEeCCHHHHHHHHHHhCCceeCCeE--EEEEeechh
Q 002335 223 VGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQE--LMLKVDQAT 298 (935)
Q Consensus 223 VgnLp~~vte~~L~~lFs~~G~V~~vki~~d~~tgk~kgfgFVeF~~~e~A~~Al~~Lng~~i~gr~--L~V~~a~~~ 298 (935)
|-|--+.++.+-|..|...+|.|.+|.|.+. +| --|.|+|++.+.|.+|..+|||..|-... |+|+++..+
T Consensus 127 IlNp~YpItvDVly~Icnp~GkVlRIvIfkk--ng---VQAmVEFdsv~~AqrAk~alNGADIYsGCCTLKIeyAkP~ 199 (494)
T KOG1456|consen 127 ILNPQYPITVDVLYTICNPQGKVLRIVIFKK--NG---VQAMVEFDSVEVAQRAKAALNGADIYSGCCTLKIEYAKPT 199 (494)
T ss_pred eecCccccchhhhhhhcCCCCceEEEEEEec--cc---eeeEEeechhHHHHHHHhhcccccccccceeEEEEecCcc
Confidence 4455668999999999999999999988874 44 57999999999999999999999887554 566666554
No 144
>KOG4364 consensus Chromatin assembly factor-I [Chromatin structure and dynamics]
Probab=91.55 E-value=5.3 Score=48.03 Aligned_cols=9 Identities=22% Similarity=0.102 Sum_probs=3.5
Q ss_pred hhHHHHHHH
Q 002335 580 DLADEVREE 588 (935)
Q Consensus 580 d~~dr~~e~ 588 (935)
|+..++.++
T Consensus 350 deerkK~e~ 358 (811)
T KOG4364|consen 350 DEERKKLES 358 (811)
T ss_pred hhhhhhhhh
Confidence 333343333
No 145
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=89.73 E-value=0.71 Score=51.76 Aligned_cols=76 Identities=17% Similarity=0.153 Sum_probs=63.1
Q ss_pred CCCcceeeccCCCCCCHHHHHHHHHhcCCcc---eeeeeccCCCCCCCceEEEEeCCHHHHHHHHHHhCCceeCCeEEEE
Q 002335 216 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVK---SWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELML 292 (935)
Q Consensus 216 ~~~~tlfVgnLp~~vte~~L~~lFs~~G~V~---~vki~~d~~tgk~kgfgFVeF~~~e~A~~Al~~Lng~~i~gr~L~V 292 (935)
....+|-+.+||+..+-++|..+|.-|-.-+ .|.++.+ ..|+.-|=+||+|.+.+.|..|....+.....+|.|.|
T Consensus 278 ~~kdcvRLRGLPy~AtvEdIL~FlgdFa~~i~f~gVHmv~N-~qGrPSGeAFIqm~nae~a~aaaqk~hk~~mk~RYiEv 356 (508)
T KOG1365|consen 278 RSKDCVRLRGLPYEATVEDILDFLGDFATDIRFQGVHMVLN-GQGRPSGEAFIQMRNAERARAAAQKCHKKLMKSRYIEV 356 (508)
T ss_pred CCCCeeEecCCChhhhHHHHHHHHHHHhhhcccceeEEEEc-CCCCcChhhhhhhhhhHHHHHHHHHHHHhhcccceEEE
Confidence 3366788999999999999999999886432 3677777 68999999999999999999999888877777777766
No 146
>KOG1923 consensus Rac1 GTPase effector FRL [Signal transduction mechanisms; Cytoskeleton]
Probab=88.66 E-value=1.7 Score=53.00 Aligned_cols=8 Identities=13% Similarity=0.048 Sum_probs=3.9
Q ss_pred HHHHHHHh
Q 002335 234 FVLSVLKV 241 (935)
Q Consensus 234 ~L~~lFs~ 241 (935)
.+...|..
T Consensus 405 ~~ee~Fk~ 412 (830)
T KOG1923|consen 405 RFEEQFKI 412 (830)
T ss_pred HHHHHHHh
Confidence 44555544
No 147
>KOG2202 consensus U2 snRNP splicing factor, small subunit, and related proteins [RNA processing and modification]
Probab=88.56 E-value=0.31 Score=52.16 Aligned_cols=62 Identities=19% Similarity=0.244 Sum_probs=50.7
Q ss_pred HHHHHH-hcCCcceeeeeccCCCCCCCceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEeech
Q 002335 235 VLSVLK-VCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVDQA 297 (935)
Q Consensus 235 L~~lFs-~~G~V~~vki~~d~~tgk~kgfgFVeF~~~e~A~~Al~~Lng~~i~gr~L~V~~a~~ 297 (935)
|...|. +||.|..++|..+ ..-...|=.||.|...++|++|+..|||-.|.|+.|...+.--
T Consensus 85 ~f~E~~~kygEiee~~Vc~N-l~~hl~GNVYV~f~~Ee~ae~a~~~lnnRw~~G~pi~ae~~pv 147 (260)
T KOG2202|consen 85 VFTELEDKYGEIEELNVCDN-LGDHLVGNVYVKFRSEEDAEAALEDLNNRWYNGRPIHAELSPV 147 (260)
T ss_pred HHHHHHHHhhhhhhhhhhcc-cchhhhhhhhhhcccHHHHHHHHHHHcCccccCCcceeeecCc
Confidence 334444 8999999877665 3445678899999999999999999999999999998877544
No 148
>PF11600 CAF-1_p150: Chromatin assembly factor 1 complex p150 subunit, N-terminal; InterPro: IPR021644 P150 is a polypeptide subunit of CAF-1, which functions in depositing newly synthesised and acetylated histones H3/H4 into chromatin during DNA replication and repair [].P150 is the HP1 interaction site of CAF-1 and lies within the N-terminal region of the protein [].
Probab=86.22 E-value=27 Score=37.20 Aligned_cols=7 Identities=71% Similarity=0.999 Sum_probs=2.9
Q ss_pred HHHHHHH
Q 002335 595 KRRAEEE 601 (935)
Q Consensus 595 ~~~~~ee 601 (935)
+++.+++
T Consensus 166 kr~~eE~ 172 (216)
T PF11600_consen 166 KRKKEEE 172 (216)
T ss_pred HHhhHHH
Confidence 4444443
No 149
>PF15023 DUF4523: Protein of unknown function (DUF4523)
Probab=85.50 E-value=3 Score=41.13 Aligned_cols=74 Identities=16% Similarity=0.219 Sum_probs=56.2
Q ss_pred CCCCcceeeccCCCCCCHH----HHHHHHHhcCCcceeeeeccCCCCCCCceEEEEeCCHHHHHHHHHHhCCceeCCeEE
Q 002335 215 EKPQTKVYVGKIAPTADSD----FVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQEL 290 (935)
Q Consensus 215 ~~~~~tlfVgnLp~~vte~----~L~~lFs~~G~V~~vki~~d~~tgk~kgfgFVeF~~~e~A~~Al~~Lng~~i~gr~L 290 (935)
+++-.||.|.=|..++... .+..-++.||.|.+|.+.- +.-|.|.|.+..+|-.|+.++.. ..-|..+
T Consensus 83 epPMsTIVVRWlkknm~~~edl~sV~~~Ls~fGpI~SVT~cG-------rqsavVvF~d~~SAC~Av~Af~s-~~pgtm~ 154 (166)
T PF15023_consen 83 EPPMSTIVVRWLKKNMQPTEDLKSVIQRLSVFGPIQSVTLCG-------RQSAVVVFKDITSACKAVSAFQS-RAPGTMF 154 (166)
T ss_pred CCCceeEEeehhhhcCChHHHHHHHHHHHHhcCCcceeeecC-------CceEEEEehhhHHHHHHHHhhcC-CCCCceE
Confidence 4556788887776665543 4555678999999987643 35799999999999999999876 6677788
Q ss_pred EEEeec
Q 002335 291 MLKVDQ 296 (935)
Q Consensus 291 ~V~~a~ 296 (935)
.+.|-+
T Consensus 155 qCsWqq 160 (166)
T PF15023_consen 155 QCSWQQ 160 (166)
T ss_pred Eeeccc
Confidence 888754
No 150
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=85.09 E-value=3.3 Score=35.29 Aligned_cols=55 Identities=15% Similarity=0.032 Sum_probs=44.3
Q ss_pred CcceeeccCCCCCCHHHHHHHHHhc---CCcceeeeeccCCCCCCCceEEEEeCCHHHHHHHHHHh
Q 002335 218 QTKVYVGKIAPTADSDFVLSVLKVC---GTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLL 280 (935)
Q Consensus 218 ~~tlfVgnLp~~vte~~L~~lFs~~---G~V~~vki~~d~~tgk~kgfgFVeF~~~e~A~~Al~~L 280 (935)
...|+|.++. .++..+|+.+|..| .....|.++-| .-|-|.|.+...|.+||.+|
T Consensus 5 peavhirGvd-~lsT~dI~~y~~~y~~~~~~~~IEWIdD-------tScNvvf~d~~~A~~AL~~L 62 (62)
T PF10309_consen 5 PEAVHIRGVD-ELSTDDIKAYFSEYFDEEGPFRIEWIDD-------TSCNVVFKDEETAARALVAL 62 (62)
T ss_pred eceEEEEcCC-CCCHHHHHHHHHHhcccCCCceEEEecC-------CcEEEEECCHHHHHHHHHcC
Confidence 3578999986 58888999999988 23557788877 46788999999999999764
No 151
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=84.99 E-value=0.56 Score=52.10 Aligned_cols=82 Identities=12% Similarity=0.109 Sum_probs=69.4
Q ss_pred CCcceeeccCCCCCCHHHHHHHHHhcCCcceeeeeccCCCCCCCceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEeec
Q 002335 217 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVDQ 296 (935)
Q Consensus 217 ~~~tlfVgnLp~~vte~~L~~lFs~~G~V~~vki~~d~~tgk~kgfgFVeF~~~e~A~~Al~~Lng~~i~gr~L~V~~a~ 296 (935)
..+++|||++.+.+.+..+..+|..+|.+..+.+........+++|++|.|...+.+..||.....+.+++..+...+..
T Consensus 87 ~~~~~f~g~~s~~~e~~~~~~~~~~~g~~~~~~~S~~~~~~~sk~~~s~~f~~ks~~~~~l~~s~~~~~~~~~~~~dl~~ 166 (285)
T KOG4210|consen 87 SSSTFFVGELSENIEESEDDNFSSEAGLRVDARSSSLEDSLSSKGGLSVHFAGKSQFFAALEESGSKVLDGNKGEKDLNT 166 (285)
T ss_pred ccccccccccccchhhccccccchhhcCcccchhhhhccccccccceeeccccHHHHHHHHHhhhccccccccccCcccc
Confidence 47899999999999999999999999998888877766789999999999999999999999655567777776666555
Q ss_pred hh
Q 002335 297 AT 298 (935)
Q Consensus 297 ~~ 298 (935)
..
T Consensus 167 ~~ 168 (285)
T KOG4210|consen 167 RR 168 (285)
T ss_pred cc
Confidence 44
No 152
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=84.53 E-value=1.6 Score=49.13 Aligned_cols=80 Identities=23% Similarity=0.244 Sum_probs=59.6
Q ss_pred CcceeeccCCCCCCHHHHHHHHHhc----CCcceeeeeccCCCCCCCceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEE
Q 002335 218 QTKVYVGKIAPTADSDFVLSVLKVC----GTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLK 293 (935)
Q Consensus 218 ~~tlfVgnLp~~vte~~L~~lFs~~----G~V~~vki~~d~~tgk~kgfgFVeF~~~e~A~~Al~~Lng~~i~gr~L~V~ 293 (935)
.-.|-..+||+++++.++..+|..- |.+..|-+++. -+|+..|-+||.|...+.|..||.. |...
T Consensus 161 qvivRmRGLPfdat~~dVv~FF~~~cpv~~g~egvLFV~r-pdgrpTGdAFvlfa~ee~aq~aL~k-hrq~--------- 229 (508)
T KOG1365|consen 161 QVIVRMRGLPFDATALDVVEFFGPPCPVTGGTEGVLFVTR-PDGRPTGDAFVLFACEEDAQFALRK-HRQN--------- 229 (508)
T ss_pred ceEEEecCCCCCcchHHHHHhcCCCCcccCCccceEEEEC-CCCCcccceEEEecCHHHHHHHHHH-HHHH---------
Confidence 3456678999999999999999732 34445556665 4899999999999999999999975 3211
Q ss_pred eechhHHHHHHHHHHhhH
Q 002335 294 VDQATREYLERYVDKKTE 311 (935)
Q Consensus 294 ~a~~~~~~l~~~k~kk~e 311 (935)
-.+.||+-|+..+.|
T Consensus 230 ---iGqRYIElFRSTaaE 244 (508)
T KOG1365|consen 230 ---IGQRYIELFRSTAAE 244 (508)
T ss_pred ---HhHHHHHHHHHhHHH
Confidence 235688888776644
No 153
>TIGR03687 pupylate_cterm ubiquitin-like protein Pup. Members of this protein family are Pup, a small protein whose ligation to target proteins steers them toward degradation. This protein family occurs in a number of bacteria, especially Actinobacteria such as Mycobacterium tuberculosis, that possess an archeal-type proteasome. All members of this protein family known during model construction end with the C-terminal motif [FY][VI]QKGG[QE]. Ligation is thought to occur between the C-terminal COOH of Pup and an epsilon-amino group of a Lys on the target protein. The N-terminal half of this protein is poorly conserved and not represented in the seed alignment.
Probab=83.85 E-value=1.6 Score=31.87 Aligned_cols=24 Identities=25% Similarity=0.468 Sum_probs=20.9
Q ss_pred CHHHHHHHHHHhhhHHHHHHHHHH
Q 002335 891 KASQMLELLQTILDDEAEMFVLKM 914 (935)
Q Consensus 891 ~~~~~~~~l~~~ld~~a~~fv~~l 914 (935)
.-..|+++|..+|+.+|+.||..+
T Consensus 4 ~~D~lLDeId~vLe~NAe~FV~~f 27 (33)
T TIGR03687 4 GVDDLLDEIDGVLESNAEEFVRGF 27 (33)
T ss_pred hHHHHHHHHHHHHHHhHHHHHHHH
Confidence 345799999999999999999865
No 154
>KOG2888 consensus Putative RNA binding protein [General function prediction only]
Probab=83.40 E-value=0.72 Score=50.68 Aligned_cols=19 Identities=11% Similarity=0.246 Sum_probs=14.9
Q ss_pred EEEEEeechhHHHHHHHHH
Q 002335 289 ELMLKVDQATREYLERYVD 307 (935)
Q Consensus 289 ~L~V~~a~~~~~~l~~~k~ 307 (935)
.+.|.+.+.-..++..|..
T Consensus 162 FmYiRYtqpp~dLw~WyEp 180 (453)
T KOG2888|consen 162 FMYIRYTQPPADLWDWYEP 180 (453)
T ss_pred eeEEeecCChhHHHHHhhh
Confidence 4678888888888887765
No 155
>KOG2135 consensus Proteins containing the RNA recognition motif [General function prediction only]
Probab=82.57 E-value=0.86 Score=52.55 Aligned_cols=76 Identities=7% Similarity=-0.006 Sum_probs=61.5
Q ss_pred CCCcceeeccCCCCCCH-HHHHHHHHhcCCcceeeeeccCCCCCCCceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEe
Q 002335 216 KPQTKVYVGKIAPTADS-DFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKV 294 (935)
Q Consensus 216 ~~~~tlfVgnLp~~vte-~~L~~lFs~~G~V~~vki~~d~~tgk~kgfgFVeF~~~e~A~~Al~~Lng~~i~gr~L~V~~ 294 (935)
...+.|-+..++++... ..|...|..||.|..|.|-.. --.|.|+|.+..+|-.|.. .++..|+++.|+|-|
T Consensus 370 ~dhs~l~lek~~~glnt~a~ln~hfA~fG~i~n~qv~~~------~~~a~vTF~t~aeag~a~~-s~~avlnnr~iKl~w 442 (526)
T KOG2135|consen 370 VDHSPLALEKSPFGLNTIADLNPHFAQFGEIENIQVDYS------SLHAVVTFKTRAEAGEAYA-SHGAVLNNRFIKLFW 442 (526)
T ss_pred cccchhhhhccCCCCchHhhhhhhhhhcCccccccccCc------hhhheeeeeccccccchhc-cccceecCceeEEEE
Confidence 33556666667777666 489999999999999987543 3578999999999988887 499999999999999
Q ss_pred echh
Q 002335 295 DQAT 298 (935)
Q Consensus 295 a~~~ 298 (935)
-...
T Consensus 443 hnps 446 (526)
T KOG2135|consen 443 HNPS 446 (526)
T ss_pred ecCC
Confidence 7764
No 156
>PF04847 Calcipressin: Calcipressin; InterPro: IPR006931 Calcipressin 1 negatively regulates calcineurin (IPR015757 from INTERPRO) by direct binding and is essential for the survival of T helper type 1 cells. Calcipressin 1 is a phosphoprotein that increases its capacity to inhibit calcineurin when phosphorylated at the FLISPP motif, and this phosphorylation also controls the half-life of calcipressin 1 by accelerating its degradation []. Calcineurin is a calcium-responsive enzyme that dephosphorylates the nuclear factor of activated T cells (NFAT). In so doing it promotes its nuclear translocation and uniquely links calcium signalling to transcriptional regulation []. Calcipressins are a family of proteins derived from three genes. Calcipressin 1 is also known as modulatory calcineurin-interacting protein 1 (MCIP1), Adapt78 and Down syndrome critical region 1 (DSCR1). Calcipressin 2 is variously known as MCIP2, ZAKI-4 and DSCR1-like 1. Calcipressin 3 is also called MCIP3 and DSCR1-like 2 []. DSCR1 (Adapt78) is associated with successful adaptation to oxidative stress and calcium stress as well as with diseases like Alzheimer's and Down syndrome. The DSCR1 (Adapt78) isoform 1 protein, calcipressin 1, inhibits calcineurin and protects against acute calcium-mediated stress damage, including transient oxidative stress []. Calcipressin 1 is encoded by DSCR1, a gene on human chromosome 21. Calcipressin 1 isoform 1 has an N-terminal coding region, which generates a new polypeptide of 252 amino acids. Endogenous calcipressin 1 exists as a complex together with the calcineurin A and B heterodimer []. ; GO: 0019722 calcium-mediated signaling; PDB: 1WEY_A.
Probab=82.43 E-value=2.9 Score=43.45 Aligned_cols=61 Identities=20% Similarity=0.141 Sum_probs=46.5
Q ss_pred HHHHHHHHHhcCCcceeeeeccCCCCCCCceEEEEeCCHHHHHHHHHHhC--CceeCCeEEEEEeechh
Q 002335 232 SDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLN--KFNIDGQELMLKVDQAT 298 (935)
Q Consensus 232 e~~L~~lFs~~G~V~~vki~~d~~tgk~kgfgFVeF~~~e~A~~Al~~Ln--g~~i~gr~L~V~~a~~~ 298 (935)
...|+.+|..|+.+..|.+.+. -+-..|.|.+.+.|..|...|+ +..|.|..|+|-|+...
T Consensus 9 ~~~l~~l~~~~~~~~~~~~L~s------FrRi~v~f~~~~~A~~~r~~l~~~~~~~~g~~l~~yf~~~~ 71 (184)
T PF04847_consen 9 LAELEELFSTYDPPVQFSPLKS------FRRIRVVFESPESAQRARQLLHWDGTSFNGKRLRVYFGQPT 71 (184)
T ss_dssp HHHHHHHHHTT-SS-EEEEETT------TTEEEEE-SSTTHHHHHHHTST--TSEETTEE-EEE----S
T ss_pred HHHHHHHHHhcCCceEEEEcCC------CCEEEEEeCCHHHHHHHHHHhcccccccCCCceEEEEcccc
Confidence 3689999999999999887764 3567899999999999999999 99999999999888543
No 157
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=81.37 E-value=3.3 Score=48.87 Aligned_cols=89 Identities=17% Similarity=0.203 Sum_probs=55.9
Q ss_pred CcceeeccCCCCCCHHHHHHHHHh----------------------------cCCcceeeeeccCCCCCCCceEEEEeCC
Q 002335 218 QTKVYVGKIAPTADSDFVLSVLKV----------------------------CGTVKSWKRAQYPSNGTPKGFGFCEFES 269 (935)
Q Consensus 218 ~~tlfVgnLp~~vte~~L~~lFs~----------------------------~G~V~~vki~~d~~tgk~kgfgFVeF~~ 269 (935)
.+++-|+||+...+..+|..|+.. .|.---+.+..|=.+-...|||||.|.+
T Consensus 361 Rtt~~i~ni~n~~~~~dl~~Ildge~~rtt~~iknipNK~T~~ml~~~d~~~~gtYDFlYLPiDF~nkcNvGYAFINm~s 440 (549)
T KOG4660|consen 361 RTTVMIKNIPNKYGQLDLLRILDGECPRTTLMIKNIPNKYTSKMLLAADEKNKGTYDFLYLPIDFKNKCNVGYAFINMTS 440 (549)
T ss_pred hhhhhhhccccchhHHHHHHHHhCcCchhhhHhhccCchhhHHhhhhhhccccCccceEEeccccccccccceeEEeecC
Confidence 456667777766555555555532 2333334455554456678999999999
Q ss_pred HHHHHHHHHHhCCceeC---C-eEEEEEeec--hhHHHHHHHH
Q 002335 270 AEGVLRALRLLNKFNID---G-QELMLKVDQ--ATREYLERYV 306 (935)
Q Consensus 270 ~e~A~~Al~~Lng~~i~---g-r~L~V~~a~--~~~~~l~~~k 306 (935)
++.+.++.+++||+.+. + +.+.|.||. .+..+++.++
T Consensus 441 p~ai~~F~kAFnGk~W~~FnS~Kia~itYArIQGk~~Li~hFq 483 (549)
T KOG4660|consen 441 PEAIIRFYKAFNGKKWEKFNSEKIASITYARIQGKEALIEHFQ 483 (549)
T ss_pred HHHHHHHHHHHcCCchhhhcceeeeeeehhhhhchHHHHHHhh
Confidence 99999999999998654 3 334444443 2333444444
No 158
>KOG2318 consensus Uncharacterized conserved protein [Function unknown]
Probab=80.95 E-value=4.2 Score=48.23 Aligned_cols=79 Identities=11% Similarity=0.106 Sum_probs=60.0
Q ss_pred CCCCcceeeccCCCC-CCHHHHHHHHHhc----CCcceeeeeccC----------CCCC---------------------
Q 002335 215 EKPQTKVYVGKIAPT-ADSDFVLSVLKVC----GTVKSWKRAQYP----------SNGT--------------------- 258 (935)
Q Consensus 215 ~~~~~tlfVgnLp~~-vte~~L~~lFs~~----G~V~~vki~~d~----------~tgk--------------------- 258 (935)
...+++|-|.|+.|. +...+|.-+|+.| |.|.+|.|.... -.|.
T Consensus 171 ~~~T~RLAVvNMDWd~v~AkDL~v~~nSFlP~gGsilSV~IYpSeFGkeRM~eEeV~GP~~el~~~~e~~~~s~sD~ee~ 250 (650)
T KOG2318|consen 171 GEETKRLAVVNMDWDRVKAKDLFVLFNSFLPKGGSILSVKIYPSEFGKERMKEEEVHGPPKELFKPVEEYKESESDDEEE 250 (650)
T ss_pred ccccceeeEeccccccccHHHHHHHHHhhcCCCCceeEEEechhhhhHHHhhhhcccCChhhhccccccCcccccchhhh
Confidence 455789999999994 6666999999876 689998875421 0122
Q ss_pred ----------------CCceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEE
Q 002335 259 ----------------PKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLK 293 (935)
Q Consensus 259 ----------------~kgfgFVeF~~~e~A~~Al~~Lng~~i~gr~L~V~ 293 (935)
.+-||.|+|.+...|...+..|+|+.|....+.++
T Consensus 251 ~~~~~~kLR~Yq~~rLkYYyAVvecDsi~tA~~vYe~CDG~EfEsS~~~~D 301 (650)
T KOG2318|consen 251 EDVDREKLRQYQLNRLKYYYAVVECDSIETAKAVYEECDGIEFESSANKLD 301 (650)
T ss_pred hhHHHHHHHHHHhhhheeEEEEEEecCchHHHHHHHhcCcceeccccceee
Confidence 13478899999999999999999999986655554
No 159
>KOG4574 consensus RNA-binding protein (contains RRM and Pumilio-like repeats) [General function prediction only]
Probab=80.70 E-value=5.4 Score=49.24 Aligned_cols=74 Identities=19% Similarity=0.164 Sum_probs=61.4
Q ss_pred CcceeeccCCCCCCHHHHHHHHHhcCCcceeeeeccCCCCCCCceEEEEeCCHHHHHHHHHHhCCcee--CCeEEEEEee
Q 002335 218 QTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNI--DGQELMLKVD 295 (935)
Q Consensus 218 ~~tlfVgnLp~~vte~~L~~lFs~~G~V~~vki~~d~~tgk~kgfgFVeF~~~e~A~~Al~~Lng~~i--~gr~L~V~~a 295 (935)
..+.++-|..-..+..-|..+|+.||.|.++...++ -..+.|+|...+.|..|+.+|+|..+ -|-..+|.++
T Consensus 298 qp~~~~~nn~v~~tSssL~~l~s~yg~v~s~wtlr~------~N~alvs~~s~~sai~a~dAl~gkevs~~g~Ps~V~~a 371 (1007)
T KOG4574|consen 298 QPKQSLENNAVNLTSSSLATLCSDYGSVASAWTLRD------LNMALVSFSSVESAILALDALQGKEVSVTGAPSRVSFA 371 (1007)
T ss_pred cchhhhhcccccchHHHHHHHHHhhcchhhheeccc------ccchhhhhHHHHHHHHhhhhhcCCcccccCCceeEEec
Confidence 455667777878888899999999999998776665 36899999999999999999999865 3777888776
Q ss_pred ch
Q 002335 296 QA 297 (935)
Q Consensus 296 ~~ 297 (935)
..
T Consensus 372 k~ 373 (1007)
T KOG4574|consen 372 KT 373 (1007)
T ss_pred cc
Confidence 54
No 160
>PF11517 Nab2: Nuclear abundant poly(A) RNA-bind protein 2 (Nab2); InterPro: IPR021083 Nab2 is a yeast heterogeneous nuclear ribonucleoprotein that modulates poly(A) tail length and mRNA. This is the N-terminal domain of the protein which mediates interactions with the C-terminal globular domain, Myosin-like protein 1 and the mRNA export factor, Gfd1 []. The N-terminal domain of Nab2 shows a structure of a helical fold. The N-terminal domain of Nab2 is thought to mediate protein:protein interactions that facilitate the nuclear export of mRNA []. An essential hydrophobic Phe73 patch on the N-terminal domain is thought to be an important component of the interface between Nab2 and Mlp1 [].; PDB: 3LCN_B 2V75_A 2JPS_A.
Probab=80.24 E-value=8.8 Score=35.40 Aligned_cols=74 Identities=14% Similarity=0.311 Sum_probs=56.4
Q ss_pred HHhhhhhHHHHHHHhhcCcchhH--HHHHHHHhhhccCCHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhhhc
Q 002335 855 LHERMRPWISKKITEFLGEEETT--LVDYIVSSTQDHVKASQMLELLQTILDDEAEMFVLKMWRMLIFEIKKVETG 928 (935)
Q Consensus 855 ~~~~~~pwi~kki~e~lG~ee~~--lv~~i~~~l~~~~~~~~~~~~l~~~ld~~a~~fv~~lwr~li~e~~~~~~g 928 (935)
+.+.||-.|.+|...+=.|-|++ +-+||+=+|...+++..++.+|...+|.=...++...-....|..++.+.|
T Consensus 8 ~~~nLK~iVaEkL~~l~NFnEDv~YVAEyIvlLisNggs~esivqELssLFD~vs~~~l~~VVQtaF~ale~Lq~G 83 (107)
T PF11517_consen 8 ITENLKVIVAEKLKTLPNFNEDVNYVAEYIVLLISNGGSVESIVQELSSLFDSVSTEALTDVVQTAFFALEALQQG 83 (107)
T ss_dssp HHHHHHHHHHHHHTTSTT--SSHHHHHHHHHHHHHTT--HHHHHHHHHHH-TTS-HHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHccccCccccHHHHHHHhheeeeCCCCHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhCC
Confidence 55678899999998886665554 889999999999999999999999999777777777777777887777766
No 161
>KOG2891 consensus Surface glycoprotein [General function prediction only]
Probab=79.97 E-value=59 Score=35.44 Aligned_cols=25 Identities=28% Similarity=0.373 Sum_probs=14.5
Q ss_pred ceEEEEeCCHH----HHHHHHHHhCCcee
Q 002335 261 GFGFCEFESAE----GVLRALRLLNKFNI 285 (935)
Q Consensus 261 gfgFVeF~~~e----~A~~Al~~Lng~~i 285 (935)
..-||.|...- -..+-+..|+|+.|
T Consensus 76 nid~iifeael~n~gimkk~l~~ldgfsi 104 (445)
T KOG2891|consen 76 NIDFIIFEAELENKGIMKKFLACLDGFSI 104 (445)
T ss_pred ccceEEeeHhhhhhhHHHHHHHHhcCCee
Confidence 56788886533 23344566666654
No 162
>KOG1985 consensus Vesicle coat complex COPII, subunit SEC24/subunit SFB2 [Intracellular trafficking, secretion, and vesicular transport]
Probab=79.07 E-value=45 Score=41.69 Aligned_cols=9 Identities=22% Similarity=0.213 Sum_probs=3.4
Q ss_pred HHHHhhhHH
Q 002335 510 YERCLKDWE 518 (935)
Q Consensus 510 ~~~r~r~~e 518 (935)
|..|.=.||
T Consensus 529 ~Ltr~~~fe 537 (887)
T KOG1985|consen 529 YLTRKIGFE 537 (887)
T ss_pred Hhhhhhhhh
Confidence 333333333
No 163
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=78.89 E-value=4.2 Score=36.67 Aligned_cols=54 Identities=6% Similarity=0.049 Sum_probs=41.6
Q ss_pred cceeeccCCCCCCHHHHHHHHHhcCCcceeeeeccCCCCCCCceEEEEeCCHHHHHHHHHHhC
Q 002335 219 TKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLN 281 (935)
Q Consensus 219 ~tlfVgnLp~~vte~~L~~lFs~~G~V~~vki~~d~~tgk~kgfgFVeF~~~e~A~~Al~~Ln 281 (935)
...||+ .|......+|.++|+.||.|. |..+.+ .-|||.....+.+..|+..++
T Consensus 10 HVFhlt-FPkeWK~~DI~qlFspfG~I~-VsWi~d-------TSAfV~l~~r~~~~~v~~~~~ 63 (87)
T PF08675_consen 10 HVFHLT-FPKEWKTSDIYQLFSPFGQIY-VSWIND-------TSAFVALHNRDQAKVVMNTLK 63 (87)
T ss_dssp CEEEEE---TT--HHHHHHHCCCCCCEE-EEEECT-------TEEEEEECCCHHHHHHHHHHT
T ss_pred eEEEEe-CchHhhhhhHHHHhccCCcEE-EEEEcC-------CcEEEEeecHHHHHHHHHHhc
Confidence 345555 899999999999999999873 566666 579999999999999999886
No 164
>KOG4285 consensus Mitotic phosphoprotein [Cell cycle control, cell division, chromosome partitioning]
Probab=76.99 E-value=8 Score=42.57 Aligned_cols=57 Identities=23% Similarity=0.332 Sum_probs=44.6
Q ss_pred cCCCCCCHHHHHHHHHhcCCcceeeeeccCCCCCCCceEEEEeCCHHHHHHHHHHhCCceeCCeE
Q 002335 225 KIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQE 289 (935)
Q Consensus 225 nLp~~vte~~L~~lFs~~G~V~~vki~~d~~tgk~kgfgFVeF~~~e~A~~Al~~Lng~~i~gr~ 289 (935)
+.++.. ...|..+|.+||.|+..... ....|-+|-|.+.-.|.+||.. ||..|+|..
T Consensus 204 GFppg~-~s~vL~~F~~cG~Vvkhv~~------~ngNwMhirYssr~~A~KALsk-ng~ii~g~v 260 (350)
T KOG4285|consen 204 GFPPGQ-VSIVLNLFSRCGEVVKHVTP------SNGNWMHIRYSSRTHAQKALSK-NGTIIDGDV 260 (350)
T ss_pred ccCccc-hhHHHHHHHhhCeeeeeecC------CCCceEEEEecchhHHHHhhhh-cCeeeccce
Confidence 455432 34788899999999775432 3347999999999999999995 999999864
No 165
>PF03880 DbpA: DbpA RNA binding domain ; InterPro: IPR005580 This RNA binding domain is found at the C terminus of a number of DEAD helicase proteins [].; PDB: 2G0C_A 3MOJ_B.
Probab=73.96 E-value=9 Score=33.55 Aligned_cols=58 Identities=16% Similarity=0.182 Sum_probs=34.5
Q ss_pred CCCHHHHHHHHHhcCCcce-----eeeeccCCCCCCCceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEee
Q 002335 229 TADSDFVLSVLKVCGTVKS-----WKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVD 295 (935)
Q Consensus 229 ~vte~~L~~lFs~~G~V~~-----vki~~d~~tgk~kgfgFVeF~~~e~A~~Al~~Lng~~i~gr~L~V~~a 295 (935)
+++..+|..+|...+.|.. +.|.. .|.||+-.. +.+..++..|++..+.|+.|.|..+
T Consensus 12 g~~~~~iv~~i~~~~gi~~~~IG~I~I~~--------~~S~vev~~-~~a~~v~~~l~~~~~~gk~v~ve~A 74 (74)
T PF03880_consen 12 GLTPRDIVGAICNEAGIPGRDIGRIDIFD--------NFSFVEVPE-EVAEKVLEALNGKKIKGKKVRVERA 74 (74)
T ss_dssp T--HHHHHHHHHTCTTB-GGGEEEEEE-S--------S-EEEEE-T-T-HHHHHHHHTT--SSS----EEE-
T ss_pred CCCHHHHHHHHHhccCCCHHhEEEEEEee--------eEEEEEECH-HHHHHHHHHhcCCCCCCeeEEEEEC
Confidence 6777888888887766654 34432 599998866 4788899999999999999999764
No 166
>PF03467 Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120 Nonsense-mediated mRNA decay (NMD) is a surveillance mechanism by which eukaryotic cells detect and degrade transcripts containing premature termination codons. Three 'up-frameshift' proteins, UPF1, UPF2 and UPF3, are essential for this process in organisms ranging from yeast, human to plants []. Exon junction complexes (EJCs) are deposited ~24 nucleotides upstream of exon-exon junctions after splicing. Translation causes displacement of the EJCs, however, premature translation termination upstream of one or more EJCs triggers the recruitment of UPF1, UPF2 and UPF3 and activates the NMD pathway [, ]. This family contains UPF3. The crystal structure of the complex between human UPF2 and UPF3b, which are, respectively, a MIF4G (middle portion of eIF4G) domain and an RNP domain (ribonucleoprotein-type RNA-binding domain) has been determined to 1.95A. The protein-protein interface is mediated by highly conserved charged residues in UPF2 and UPF3b and involves the beta-sheet surface of the UPF3b ribonucleoprotein (RNP) domain, which is generally used by these domains to bind nucleic acids. In UPF3b the RNP domain does not bind RNA, whereas the UPF2 construct and the complex do. It is clear that some RNP domains have evolved for specific protein-protein interactions rather than as nucleic acid binding modules [].; PDB: 1UW4_A 2L08_A.
Probab=71.92 E-value=3.2 Score=42.86 Aligned_cols=81 Identities=11% Similarity=0.101 Sum_probs=50.0
Q ss_pred CCcceeeccCCCCCCHHHHHHHHHh-cCCcceeeeecc---CCCC--CCCceEEEEeCCHHHHHHHHHHhCCceeCC---
Q 002335 217 PQTKVYVGKIAPTADSDFVLSVLKV-CGTVKSWKRAQY---PSNG--TPKGFGFCEFESAEGVLRALRLLNKFNIDG--- 287 (935)
Q Consensus 217 ~~~tlfVgnLp~~vte~~L~~lFs~-~G~V~~vki~~d---~~tg--k~kgfgFVeF~~~e~A~~Al~~Lng~~i~g--- 287 (935)
....|.|.+||++++++++...++. +|.-..|..+.. .... ....-|||.|.+.+++..-+..++|+.|.+
T Consensus 6 ~~~KvVIR~LPP~LteeeF~~~i~~~l~~~~~w~y~~g~~~~~~~~~~~~SRaYi~F~~~~~~~~F~~~~~g~~F~D~kg 85 (176)
T PF03467_consen 6 EGTKVVIRRLPPNLTEEEFWEQISPWLPDEWDWYYFQGKYGKKSFKPPTYSRAYINFKNPEDLLEFRDRFDGHVFVDSKG 85 (176)
T ss_dssp ---EEEEEEE-TTS-HHHHCCCCSS--SSE---EEEEEEES-SSSTTS--EEEEEEESSCHHHHHHHHHCTTEEEE-TTS
T ss_pred cCceEEEeCCCCCCCHHHHHHHhhhhcccccceEEEecCCCCccCCCCcceEEEEEeCCHHHHHHHHHhcCCcEEECCCC
Confidence 3568999999999999999987775 665544544331 1111 123569999999999999999999987742
Q ss_pred --eEEEEEeech
Q 002335 288 --QELMLKVDQA 297 (935)
Q Consensus 288 --r~L~V~~a~~ 297 (935)
....|.++--
T Consensus 86 ~~~~~~VE~Apy 97 (176)
T PF03467_consen 86 NEYPAVVEFAPY 97 (176)
T ss_dssp -EEEEEEEE-SS
T ss_pred CCcceeEEEcch
Confidence 2345666554
No 167
>KOG0226 consensus RNA-binding proteins [General function prediction only]
Probab=70.06 E-value=13 Score=40.04 Aligned_cols=71 Identities=13% Similarity=0.123 Sum_probs=47.4
Q ss_pred ceeeccCCCCCCHHH---HHHHHHhcCCcceeeeeccCCCCCCCceEEEEeCCHHHHHHHHHHhCCceeCCeEEE
Q 002335 220 KVYVGKIAPTADSDF---VLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELM 291 (935)
Q Consensus 220 tlfVgnLp~~vte~~---L~~lFs~~G~V~~vki~~d~~tgk~kgfgFVeF~~~e~A~~Al~~Lng~~i~gr~L~ 291 (935)
.+|++|+-..+..+- +...|+.|-.+...+++++ .-+...+|+|+.|........+-..-++..|+...|+
T Consensus 98 ~p~~~~~g~~v~pep~lp~~~~f~~~p~L~ktk~v~~-~p~~~~~~~~~~~k~s~a~~k~~~~~~~Kki~~~~VR 171 (290)
T KOG0226|consen 98 RPFQSNAGATVNPEPPLPLPVVFSEYPSLVKTKLVRD-RPQPIRPEAFESFKASDALLKAETEKEKKKIGKPPVR 171 (290)
T ss_pred cccccccccccCCCCCCcchhhhccchhhhhhhhhhc-CCCccCcccccCcchhhhhhhhccccccccccCccee
Confidence 344444444333332 2567777777777888887 4788899999999887777777666566666666533
No 168
>KOG3702 consensus Nuclear polyadenylated RNA binding protein [RNA processing and modification]
Probab=69.37 E-value=5.3 Score=48.15 Aligned_cols=64 Identities=14% Similarity=0.343 Sum_probs=53.9
Q ss_pred HhhhhhHHHHHHHhhcCcchhHHHHHHHHhhhccCCHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Q 002335 856 HERMRPWISKKITEFLGEEETTLVDYIVSSTQDHVKASQMLELLQTILDDEAEMFVLKMWRMLI 919 (935)
Q Consensus 856 ~~~~~pwi~kki~e~lG~ee~~lv~~i~~~l~~~~~~~~~~~~l~~~ld~~a~~fv~~lwr~li 919 (935)
..+++--+..+..+|+|-.-+.+++.||+.|........-..+|.-||+++.+.||..||-.|-
T Consensus 21 ~~k~k~~~kddl~~~~g~~t~~~~~~~f~~~~r~~~~~~ea~e~~~~~ed~~~~~~a~~~~~~~ 84 (681)
T KOG3702|consen 21 VAKLKEMVKDDLKEYMGDYTDDILVEYFIVLLRNGRRKEEANELKIFLEDDSDSFVAWLWDHLA 84 (681)
T ss_pred hhhhhhhhhhhHHhhcCCchhhhhhHHHHHHHhccccccchhhhhhhhhhhhhhhhhhhhhhHH
Confidence 3688899999999999998777777777777666655555669999999999999999999987
No 169
>KOG2591 consensus c-Mpl binding protein, contains La domain [Signal transduction mechanisms]
Probab=69.33 E-value=4.6 Score=47.64 Aligned_cols=70 Identities=23% Similarity=0.303 Sum_probs=56.4
Q ss_pred CCCcceeeccCCCCCCHHHHHHHHH--hcCCcceeeeeccCCCCCCCceEEEEeCCHHHHHHHHHHhCC--ceeCCeEEE
Q 002335 216 KPQTKVYVGKIAPTADSDFVLSVLK--VCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNK--FNIDGQELM 291 (935)
Q Consensus 216 ~~~~tlfVgnLp~~vte~~L~~lFs--~~G~V~~vki~~d~~tgk~kgfgFVeF~~~e~A~~Al~~Lng--~~i~gr~L~ 291 (935)
...|.|++.-|+..+..+.++.||. .|-.+++|.+..+ .-=||+|++..+|..|...|.. ..|.|+.|.
T Consensus 173 ~kRcIvilREIpettp~e~Vk~lf~~encPk~iscefa~N-------~nWyITfesd~DAQqAykylreevk~fqgKpIm 245 (684)
T KOG2591|consen 173 HKRCIVILREIPETTPIEVVKALFKGENCPKVISCEFAHN-------DNWYITFESDTDAQQAYKYLREEVKTFQGKPIM 245 (684)
T ss_pred cceeEEEEeecCCCChHHHHHHHhccCCCCCceeeeeeec-------CceEEEeecchhHHHHHHHHHHHHHhhcCcchh
Confidence 3457788999999999999999997 5889999987765 2358999999999999988753 456677665
Q ss_pred E
Q 002335 292 L 292 (935)
Q Consensus 292 V 292 (935)
.
T Consensus 246 A 246 (684)
T KOG2591|consen 246 A 246 (684)
T ss_pred h
Confidence 4
No 170
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=68.97 E-value=25 Score=43.23 Aligned_cols=11 Identities=18% Similarity=0.268 Sum_probs=5.1
Q ss_pred HHHHHHHh-cCC
Q 002335 234 FVLSVLKV-CGT 244 (935)
Q Consensus 234 ~L~~lFs~-~G~ 244 (935)
.|..+++. ||.
T Consensus 524 ~i~~~l~~~~g~ 535 (585)
T PRK14950 524 ITEELLSNFVGK 535 (585)
T ss_pred HHHHHHHHHhCC
Confidence 44555543 344
No 171
>KOG2888 consensus Putative RNA binding protein [General function prediction only]
Probab=65.04 E-value=0.96 Score=49.77 Aligned_cols=16 Identities=13% Similarity=0.374 Sum_probs=8.0
Q ss_pred HHHHHHHhcCCcceee
Q 002335 234 FVLSVLKVCGTVKSWK 249 (935)
Q Consensus 234 ~L~~lFs~~G~V~~vk 249 (935)
.|.+||-+.-.|.-|.
T Consensus 85 videIyyqVkHvEPWe 100 (453)
T KOG2888|consen 85 VIDEIYYQVKHVEPWE 100 (453)
T ss_pred HHHHHHHHHhccCchh
Confidence 4455555544444443
No 172
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=65.04 E-value=28 Score=42.84 Aligned_cols=6 Identities=0% Similarity=0.207 Sum_probs=2.3
Q ss_pred eEEEEE
Q 002335 288 QELMLK 293 (935)
Q Consensus 288 r~L~V~ 293 (935)
+.|.|.
T Consensus 535 ~~~~v~ 540 (585)
T PRK14950 535 KTCAVR 540 (585)
T ss_pred CceEEE
Confidence 334443
No 173
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=64.32 E-value=34 Score=32.65 Aligned_cols=68 Identities=12% Similarity=0.046 Sum_probs=49.0
Q ss_pred CcceeeccCCCCCCHHHHHHHHHhcC-CcceeeeeccCCCCCCCceEEEEeCCHHHHHHHHHHhCCceeCC
Q 002335 218 QTKVYVGKIAPTADSDFVLSVLKVCG-TVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDG 287 (935)
Q Consensus 218 ~~tlfVgnLp~~vte~~L~~lFs~~G-~V~~vki~~d~~tgk~kgfgFVeF~~~e~A~~Al~~Lng~~i~g 287 (935)
...+.+...++.++.+.|..+.+.+- .|..++|+++ ...++-...+.|.+...|..=...+||..|+.
T Consensus 13 ~~~~~l~vp~~~~~~d~l~~f~~~~~~~i~~~riird--~~pnrymVLikF~~~~~Ad~Fy~~fNGk~Fns 81 (110)
T PF07576_consen 13 STLCCLAVPPYMTPSDFLLFFGAPFREDIEHIRIIRD--GTPNRYMVLIKFRDQESADEFYEEFNGKPFNS 81 (110)
T ss_pred ceEEEEEeCcccccHHHHHHhhhcccccEEEEEEeeC--CCCceEEEEEEECCHHHHHHHHHHhCCCccCC
Confidence 44455555666666677776666554 4556778776 22355668889999999999999999998763
No 174
>PF11767 SET_assoc: Histone lysine methyltransferase SET associated; InterPro: IPR024636 The SET domain is a protein-protein interaction domain found in protein lysine methyltransferase enzymes. This entry represents a domain of unknown function which is associated with the SET domain and found in histone lysine methyltransferases [].
Probab=62.77 E-value=24 Score=30.52 Aligned_cols=55 Identities=15% Similarity=0.233 Sum_probs=41.8
Q ss_pred CCCHHHHHHHHHhcCCcceeeeeccCCCCCCCceEEEEeCCHHHHHHHHHHhCCceeCCeEEEE
Q 002335 229 TADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELML 292 (935)
Q Consensus 229 ~vte~~L~~lFs~~G~V~~vki~~d~~tgk~kgfgFVeF~~~e~A~~Al~~Lng~~i~gr~L~V 292 (935)
.++-.+|+..|..|+ |..+..-.+ || ||.|.+..+|.+|....+|..+.+..|.+
T Consensus 11 ~~~v~d~K~~Lr~y~----~~~I~~d~t----Gf-YIvF~~~~Ea~rC~~~~~~~~~f~y~m~M 65 (66)
T PF11767_consen 11 GVTVEDFKKRLRKYR----WDRIRDDRT----GF-YIVFNDSKEAERCFRAEDGTLFFTYRMQM 65 (66)
T ss_pred CccHHHHHHHHhcCC----cceEEecCC----EE-EEEECChHHHHHHHHhcCCCEEEEEEEEe
Confidence 467789999999885 332332223 33 79999999999999999999988877654
No 175
>KOG4246 consensus Predicted DNA-binding protein, contains SAP domain [General function prediction only]
Probab=61.00 E-value=2.3 Score=51.96 Aligned_cols=9 Identities=11% Similarity=0.508 Sum_probs=5.1
Q ss_pred CcceeeccC
Q 002335 218 QTKVYVGKI 226 (935)
Q Consensus 218 ~~tlfVgnL 226 (935)
....|+|++
T Consensus 145 ~qR~f~gvv 153 (1194)
T KOG4246|consen 145 PQRRFAGVV 153 (1194)
T ss_pred cceeeehhh
Confidence 455666654
No 176
>KOG4246 consensus Predicted DNA-binding protein, contains SAP domain [General function prediction only]
Probab=59.73 E-value=3.5 Score=50.45 Aligned_cols=20 Identities=20% Similarity=0.338 Sum_probs=9.7
Q ss_pred ceEEEEeCCHHHHHHHHHHhC
Q 002335 261 GFGFCEFESAEGVLRALRLLN 281 (935)
Q Consensus 261 gfgFVeF~~~e~A~~Al~~Ln 281 (935)
.||||.-..+- -..+|..++
T Consensus 159 tygfVD~dvff-Qls~~~g~h 178 (1194)
T KOG4246|consen 159 TYGFVDQDVFF-QLSKMQGLH 178 (1194)
T ss_pred ccccccHHHHH-HHHHHhcCC
Confidence 68888532222 234444444
No 177
>PF07174 FAP: Fibronectin-attachment protein (FAP); InterPro: IPR010801 This family contains bacterial fibronectin-attachment proteins (FAP). Family members are rich in alanine and proline, are approximately 300 long, and seem to be restricted to mycobacteria. These proteins contain a fibronectin-binding motif that allows mycobacteria to bind to fibronectin in the extracellular matrix [].; GO: 0050840 extracellular matrix binding, 0005576 extracellular region
Probab=55.97 E-value=56 Score=35.74 Aligned_cols=10 Identities=30% Similarity=0.541 Sum_probs=4.8
Q ss_pred cceeeccCCC
Q 002335 219 TKVYVGKIAP 228 (935)
Q Consensus 219 ~tlfVgnLp~ 228 (935)
+.|.+|.|..
T Consensus 162 t~v~lgrld~ 171 (297)
T PF07174_consen 162 TSVVLGRLDL 171 (297)
T ss_pred ceEEeccccc
Confidence 3455555543
No 178
>PF05639 Pup: Pup-like protein; InterPro: IPR008515 This family consists of several short bacterial proteins formely known as (DUF797). It was recently shown that Mycobacterium tuberculosis contains a small protein, Pup (Rv2111c), that is covalently conjugated to the e-NH2 groups of lysines on several target proteins (pupylation) such as the malonyl CoA acyl carrier protein (FabD) []. Pupylation of FabD was shown to result in its recruitment to the mycobacterial proteasome and subsequent degradation analogous to eukaryotic ubiquitin-conjugated proteins. Searches recovered Pup orthologs in all major actinobacteria lineages including the basal bifidobacteria and also sporadically in certain other bacterial lineages []. The Pup proteins were all between 50-90 residues in length and a multiple alignment shows that they all contain a conserved motif with a G [EQ] signature at the C terminus. Thus, all of them are suitable for conjugation via the terminal glutamate or the deamidated glutamine (as shown in the case of the Mycobacterium Pup []). The conserved globular core of Pup is predicted to form a bihelical unit with the extreme C-terminal 6-7 residues forming a tail in the extended conformation. Thus, Pup is structurally unrelated to the ubiquitin fold and has convergently evolved the function of protein modifier. ; PDB: 3M91_D 3M9D_I.
Probab=55.44 E-value=3.3 Score=35.80 Aligned_cols=25 Identities=24% Similarity=0.476 Sum_probs=14.8
Q ss_pred CCHHHHHHHHHHhhhHHHHHHHHHH
Q 002335 890 VKASQMLELLQTILDDEAEMFVLKM 914 (935)
Q Consensus 890 ~~~~~~~~~l~~~ld~~a~~fv~~l 914 (935)
.+-..||++|..||+.+|+.||..+
T Consensus 39 ~~vD~lLDeID~vLE~NAeeFVr~f 63 (69)
T PF05639_consen 39 DDVDDLLDEIDSVLETNAEEFVRSF 63 (69)
T ss_dssp CCHHHHHHHHTTTSSSC--------
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3567899999999999999999754
No 179
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=54.28 E-value=34 Score=39.84 Aligned_cols=68 Identities=7% Similarity=0.002 Sum_probs=56.4
Q ss_pred CcceeeccCCCCCCHHHHHHHHHhc-CCcceeeeeccCCCCCCCceEEEEeCCHHHHHHHHHHhCCceeCC
Q 002335 218 QTKVYVGKIAPTADSDFVLSVLKVC-GTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDG 287 (935)
Q Consensus 218 ~~tlfVgnLp~~vte~~L~~lFs~~-G~V~~vki~~d~~tgk~kgfgFVeF~~~e~A~~Al~~Lng~~i~g 287 (935)
.+.|+|-.+|..++-.+|..|+..| -.|..+++++|. --.+-...|.|.+..+|..-...+||..|+.
T Consensus 74 ~~mLcilaVP~~mt~~Dll~F~~~~~~~I~~irivRd~--~pnrymvLIkFr~q~da~~Fy~efNGk~Fn~ 142 (493)
T KOG0804|consen 74 STMLCILAVPAYMTSHDLLRFCASFIKQISDIRIVRDG--MPNRYMVLIKFRDQADADTFYEEFNGKQFNS 142 (493)
T ss_pred CcEEEEEeccccccHHHHHHHHHHHhhhhheeEEeecC--CCceEEEEEEeccchhHHHHHHHcCCCcCCC
Confidence 7889999999999999999988765 468889999962 2233457799999999999999999998764
No 180
>PRK15319 AIDA autotransporter-like protein ShdA; Provisional
Probab=53.19 E-value=22 Score=48.12 Aligned_cols=13 Identities=8% Similarity=-0.008 Sum_probs=7.1
Q ss_pred CCceeCCeEEEEEe
Q 002335 281 NKFNIDGQELMLKV 294 (935)
Q Consensus 281 ng~~i~gr~L~V~~ 294 (935)
+|+++++. +++.|
T Consensus 1858 sG~YVDsw-lQy~w 1870 (2039)
T PRK15319 1858 SGAYVDSW-YQYGF 1870 (2039)
T ss_pred cceEEEEE-EEeeE
Confidence 56666643 45555
No 181
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=51.99 E-value=4.5 Score=42.55 Aligned_cols=77 Identities=16% Similarity=0.356 Sum_probs=63.7
Q ss_pred CCCCcceeecc----CCCCCCHHHHHHHHHhcCCcceeeeeccCCCCCCCceEEEEeCCHHHHHHHHHHhCCceeCCeEE
Q 002335 215 EKPQTKVYVGK----IAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQEL 290 (935)
Q Consensus 215 ~~~~~tlfVgn----Lp~~vte~~L~~lFs~~G~V~~vki~~d~~tgk~kgfgFVeF~~~e~A~~Al~~Lng~~i~gr~L 290 (935)
.....+++.|+ |...++.+.+..+|+..|.+..+++-++ .+|+.+.|+|+.|.-....-.++....++..--+++
T Consensus 77 ~e~q~~~r~G~shapld~r~~~ei~~~v~s~a~p~~~~R~~~~-~d~rnrn~~~~~~qr~~~~P~~~~~y~~l~~~~~~~ 155 (267)
T KOG4454|consen 77 DEEQRTLRCGNSHAPLDERVTEEILYEVFSQAGPIEGVRIPTD-NDGRNRNFGFVTYQRLCAVPFALDLYQGLELFQKKV 155 (267)
T ss_pred chhhcccccCCCcchhhhhcchhhheeeecccCCCCCcccccc-ccCCccCccchhhhhhhcCcHHhhhhcccCcCCCCc
Confidence 34567888888 8888999999999999999999999888 579999999999988888888888777766555544
Q ss_pred EE
Q 002335 291 ML 292 (935)
Q Consensus 291 ~V 292 (935)
.+
T Consensus 156 ~~ 157 (267)
T KOG4454|consen 156 TI 157 (267)
T ss_pred cc
Confidence 44
No 182
>KOG3938 consensus RGS-GAIP interacting protein GIPC, contains PDZ domain [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=50.95 E-value=18 Score=39.27 Aligned_cols=60 Identities=20% Similarity=0.399 Sum_probs=48.7
Q ss_pred hhhHHHHHHHhhcCcchhHHHHHHHHhhhccCCHHHHHHHHHHh-hhHH--HHHHHHHHHHHHH
Q 002335 859 MRPWISKKITEFLGEEETTLVDYIVSSTQDHVKASQMLELLQTI-LDDE--AEMFVLKMWRMLI 919 (935)
Q Consensus 859 ~~pwi~kki~e~lG~ee~~lv~~i~~~l~~~~~~~~~~~~l~~~-ld~~--a~~fv~~lwr~li 919 (935)
|. -|+.....|||+.|..|-.-|++.-++..++.++.+.|... |.+= ...||..||-.+=
T Consensus 261 i~-kindllesymGirD~eLA~~i~e~~~~~~n~~efaeaideseL~~F~FpDefVfdvWg~Ig 323 (334)
T KOG3938|consen 261 IE-KINDLLESYMGIRDTELASTIWETGKDKENPDEFAEAIDESELGDFAFPDEFVFDVWGAIG 323 (334)
T ss_pred HH-HHHHHHHHhcCCCcHHHHHHHHHhccccCCHHHHHHHhhhcccccccCCcceeeehhhhhh
Confidence 44 67778889999999999999999999999998888777666 4432 4679999997653
No 183
>PF07174 FAP: Fibronectin-attachment protein (FAP); InterPro: IPR010801 This family contains bacterial fibronectin-attachment proteins (FAP). Family members are rich in alanine and proline, are approximately 300 long, and seem to be restricted to mycobacteria. These proteins contain a fibronectin-binding motif that allows mycobacteria to bind to fibronectin in the extracellular matrix [].; GO: 0050840 extracellular matrix binding, 0005576 extracellular region
Probab=48.81 E-value=87 Score=34.36 Aligned_cols=25 Identities=4% Similarity=0.018 Sum_probs=11.1
Q ss_pred CcceeeccCCCCCCH-----HHHHHHHHhc
Q 002335 218 QTKVYVGKIAPTADS-----DFVLSVLKVC 242 (935)
Q Consensus 218 ~~tlfVgnLp~~vte-----~~L~~lFs~~ 242 (935)
.-.||-+--+.+..- .++-+||..|
T Consensus 170 d~kl~a~ae~dn~kaa~rl~sdmgeffmp~ 199 (297)
T PF07174_consen 170 DLKLFASAEPDNTKAAVRLASDMGEFFMPY 199 (297)
T ss_pred cccccccccCChHHHHHHHhccccceeccC
Confidence 345565544333322 1334456555
No 184
>KOG2135 consensus Proteins containing the RNA recognition motif [General function prediction only]
Probab=48.12 E-value=20 Score=41.90 Aligned_cols=63 Identities=19% Similarity=0.399 Sum_probs=46.4
Q ss_pred hhhhhHHHHHHHhhcCcchhHHHHHHHHhhhccC----CHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Q 002335 857 ERMRPWISKKITEFLGEEETTLVDYIVSSTQDHV----KASQMLELLQTILDDEAEMFVLKMWRMLI 919 (935)
Q Consensus 857 ~~~~pwi~kki~e~lG~ee~~lv~~i~~~l~~~~----~~~~~~~~l~~~ld~~a~~fv~~lwr~li 919 (935)
+.|+-|+.+-..=+--..-..|-.||+-.|++.. =+..++++|..||.+++..||.||+..|-
T Consensus 7 d~Lk~wlsd~lePi~Dadpsala~yvlal~kkdkse~elk~~~~~ql~vfl~~et~pfv~K~fda~~ 73 (526)
T KOG2135|consen 7 DALKDWLSDALEPICDADPSALAKYVLALLKKDKSEKELKALCIEQLDVFLRQETIPFVDKLFDALR 73 (526)
T ss_pred HHHHHHHhhhccCcccCChHHHHHHHHHHhhcCCCchhhhhhhHHhcchhhhcccchHHHHHHHhhc
Confidence 4567776654443333344458899999998644 34567799999999999999999987664
No 185
>cd07354 HN_L-delphilin-R1_like First harmonin_N_like domain (repeat 1) of L-delphilin, and related domains. This subgroup contains the first of two harmonin_N_like domains of an alternatively spliced longer variant of mouse delphilin (L-delphilin, isoform 1), and related domains. Delphilin is a scaffold protein which binds the glutamate receptor delta-2 (GRID2) subunit and the monocarboxylate transporter 2 at the cerebellar parallel fiber-Purkinje cell synapses. The N-terminus of L-delphilin contains this harmonin_N_like domain preceded by a postsynaptic density-95/discs-large/ZO-1 (PDZ) protein-binding domain, PDZ1. L-delphilin, in common with the shorter C-terminal isoforms (S-delphilin/delphilin alpha and delphilin beta) has a second harmonin_N_like domain (not belonging to this subgroup) and a second PDZ domain, PDZ2. This first harmonin_N_like domain is a putative protein-binding module based on its sequence similarity to the harmonin N-domain.
Probab=48.09 E-value=35 Score=30.48 Aligned_cols=55 Identities=20% Similarity=0.315 Sum_probs=42.0
Q ss_pred HHHHHhhcCcchhHHHHHHHHhhhcc---CCHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Q 002335 864 SKKITEFLGEEETTLVDYIVSSTQDH---VKASQMLELLQTILDDEAEMFVLKMWRMLI 919 (935)
Q Consensus 864 ~kki~e~lG~ee~~lv~~i~~~l~~~---~~~~~~~~~l~~~ld~~a~~fv~~lwr~li 919 (935)
..||..+|| .|++.-++++..|+.. .+-..|+..|.++|..++..=+..=-|.+|
T Consensus 9 ~~Kvd~iL~-~dp~~Ke~l~~aLk~Ya~~k~vd~l~~aL~~~L~~e~~~~Lld~IR~fI 66 (80)
T cd07354 9 SRKVDAILG-DDPVKKEQVFAALKQYAADKNVDCLVWALCGLLQTEAHKKLLDEIRIFI 66 (80)
T ss_pred HHHHHHHhc-CCHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHhCcHHHHHHHHHhHhcC
Confidence 578999999 5888999999999753 366789999999999887654444334433
No 186
>KOG0163 consensus Myosin class VI heavy chain [Cytoskeleton]
Probab=47.06 E-value=4.3e+02 Score=33.18 Aligned_cols=25 Identities=12% Similarity=0.538 Sum_probs=13.0
Q ss_pred hHHHHHHH---------hhcCcchhHHHHHHHHh
Q 002335 861 PWISKKIT---------EFLGEEETTLVDYIVSS 885 (935)
Q Consensus 861 pwi~kki~---------e~lG~ee~~lv~~i~~~ 885 (935)
+||...++ =.-|-.|--+++.-++.
T Consensus 1179 q~I~RQm~l~~~kpP~lLvAGkDDmqMCeL~Lee 1212 (1259)
T KOG0163|consen 1179 QWIARQMELHPDKPPILLVAGKDDMQMCELSLEE 1212 (1259)
T ss_pred HHHHhhheecCCCCCeEEEecCchHHHhcchhHh
Confidence 67776643 22354454456555443
No 187
>KOG2295 consensus C2H2 Zn-finger protein [General function prediction only]
Probab=47.01 E-value=4.4 Score=47.76 Aligned_cols=72 Identities=11% Similarity=0.098 Sum_probs=57.9
Q ss_pred CCcceeeccCCCCCCHHHHHHHHHhcCCcceeeeeccCCCCCCCceEEEEeCCHHHHHHHHHHhCCceeCCe
Q 002335 217 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQ 288 (935)
Q Consensus 217 ~~~tlfVgnLp~~vte~~L~~lFs~~G~V~~vki~~d~~tgk~kgfgFVeF~~~e~A~~Al~~Lng~~i~gr 288 (935)
..|+|||.||.++++-.+|..++..+-.+..+.+...-.-.+...+++|+|.---...-|+-+||++.+...
T Consensus 230 ke~sll~rni~Pnis~aeIe~~ck~i~~~lrfals~~~aek~~~r~lwv~fk~~~ni~~a~~aLn~irl~s~ 301 (648)
T KOG2295|consen 230 KECSLLVRNILPNISVAEIENLCKGIPGFLRFALSTINAEKNFERRLWVTFKRGTNIKEACWALNGIRLRSN 301 (648)
T ss_pred HHHHHHHhccCCcccHHHHHHHhccCchheeeeccCchHHHHHHHHhhHhhccccchHHHHHHhhhcccccc
Confidence 357899999999999999999999888777776654433344567899999998888899999998866543
No 188
>KOG3054 consensus Uncharacterized conserved protein [Function unknown]
Probab=46.51 E-value=76 Score=34.21 Aligned_cols=8 Identities=63% Similarity=0.630 Sum_probs=5.3
Q ss_pred ChHHHhhh
Q 002335 725 STEELQAA 732 (935)
Q Consensus 725 ~~~~~~~~ 732 (935)
+.+|+.||
T Consensus 258 S~eEl~AV 265 (299)
T KOG3054|consen 258 SMEELAAV 265 (299)
T ss_pred cHHHHHHH
Confidence 77776544
No 189
>PF03276 Gag_spuma: Spumavirus gag protein; InterPro: IPR004957 The Spumavirus gag protein is a core viral polyprotein that undergoes specific enzymatic cleavages in vivo to yield the mature protein.; GO: 0019028 viral capsid
Probab=43.57 E-value=1.1e+02 Score=36.57 Aligned_cols=9 Identities=44% Similarity=0.545 Sum_probs=3.9
Q ss_pred HHHHHHHHH
Q 002335 270 AEGVLRALR 278 (935)
Q Consensus 270 ~e~A~~Al~ 278 (935)
.+.+..|+.
T Consensus 360 ~EGv~~A~~ 368 (582)
T PF03276_consen 360 QEGVATAYN 368 (582)
T ss_pred hhhHHHHHH
Confidence 344444444
No 190
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=43.42 E-value=7.8e+02 Score=31.03 Aligned_cols=10 Identities=10% Similarity=-0.210 Sum_probs=4.2
Q ss_pred hcCCcceeee
Q 002335 241 VCGTVKSWKR 250 (935)
Q Consensus 241 ~~G~V~~vki 250 (935)
.||..+.+.+
T Consensus 636 ~~g~~~~~~~ 645 (700)
T PRK12323 636 HFGQPVRVVC 645 (700)
T ss_pred HhCCceEEEE
Confidence 4444444333
No 191
>KOG2689 consensus Predicted ubiquitin regulatory protein [Posttranslational modification, protein turnover, chaperones]
Probab=40.27 E-value=2.1e+02 Score=31.61 Aligned_cols=29 Identities=31% Similarity=0.310 Sum_probs=14.8
Q ss_pred HHHHhhhhhhhhhHHHHHHHHHHHHHHHH
Q 002335 569 KRRKRIREKEEDLADEVREEEEIAVAKRR 597 (935)
Q Consensus 569 R~r~r~re~~~d~~dr~~e~~E~~~~~~~ 597 (935)
+++.+..|+..+..+|++++.|..++++|
T Consensus 133 ~~r~q~~e~~~~~qkRrreK~e~~eaRqR 161 (290)
T KOG2689|consen 133 KRRLQDDEMRRAAQKRRREKAEDEEARQR 161 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhHHHHHH
Confidence 44445555555555555555454444443
No 192
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]
Probab=38.79 E-value=3.2 Score=47.29 Aligned_cols=76 Identities=17% Similarity=0.234 Sum_probs=62.0
Q ss_pred CCcceeeccCCCCCCHHHHHHHHHhcCCcceeeeeccCCCCCCCceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEee
Q 002335 217 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVD 295 (935)
Q Consensus 217 ~~~tlfVgnLp~~vte~~L~~lFs~~G~V~~vki~~d~~tgk~kgfgFVeF~~~e~A~~Al~~Lng~~i~gr~L~V~~a 295 (935)
..+.+-|.||++....+.|-.|+..||.|..|..+. +..-...--|+|...+.+..||..|||+.+....++|.|-
T Consensus 79 rsrk~Qirnippql~wevld~Ll~qyg~ve~~eqvn---t~~etavvnvty~~~~~~~~ai~kl~g~Q~en~~~k~~Yi 154 (584)
T KOG2193|consen 79 RSRKIQIRNIPPQLQWEVLDSLLAQYGTVENCEQVN---TDSETAVVNVTYSAQQQHRQAIHKLNGPQLENQHLKVGYI 154 (584)
T ss_pred HhhhhhHhcCCHHHHHHHHHHHHhccCCHhHhhhhc---cchHHHHHHHHHHHHHHHHHHHHhhcchHhhhhhhhcccC
Confidence 357799999999999999999999999999986532 1122234457889999999999999999999999888763
No 193
>PF13797 Post_transc_reg: Post-transcriptional regulator
Probab=38.04 E-value=77 Score=28.95 Aligned_cols=58 Identities=26% Similarity=0.414 Sum_probs=46.7
Q ss_pred HHhhhhhHHHHHHHhh--cCc---chhHHHHHHHHhhhccCCHHHHHHHHHHhhhHHHHHHHH
Q 002335 855 LHERMRPWISKKITEF--LGE---EETTLVDYIVSSTQDHVKASQMLELLQTILDDEAEMFVL 912 (935)
Q Consensus 855 ~~~~~~pwi~kki~e~--lG~---ee~~lv~~i~~~l~~~~~~~~~~~~l~~~ld~~a~~fv~ 912 (935)
..+.|+|||..|+.|| ||. ..+.|=+|+++..-++..+..|-+-+..||-=.+-.||.
T Consensus 5 ~~~~v~p~l~sK~eEf~~lGY~~vt~~dlw~yl~~~~WK~~~~~~l~e~V~DIlsl~~~~~m~ 67 (87)
T PF13797_consen 5 WREQVEPALQSKAEEFHLLGYESVTEEDLWSYLTEKKWKKKKPPRLHELVNDILSLKPNDYMN 67 (87)
T ss_pred HHHHHHHHHHHHHHHHHHhCcCcCCHHHHHHHHHHHHhccCCCcCHHHHHHHHHcCCHHHHHH
Confidence 4567999999999985 564 578899999999988888888888888887766666664
No 194
>PF09932 DUF2164: Uncharacterized conserved protein (DUF2164); InterPro: IPR018680 This family of various hypothetical prokaryotic proteins has no known function.
Probab=33.55 E-value=94 Score=27.67 Aligned_cols=64 Identities=19% Similarity=0.440 Sum_probs=44.3
Q ss_pred hhhHHhhhhhHHHHHHHhhcCc-chhHHHHHHHHhhhccCCHHHHHHHHHHhhhHHHHHHHHHHHH
Q 002335 852 KHELHERMRPWISKKITEFLGE-EETTLVDYIVSSTQDHVKASQMLELLQTILDDEAEMFVLKMWR 916 (935)
Q Consensus 852 ~~~~~~~~~pwi~kki~e~lG~-ee~~lv~~i~~~l~~~~~~~~~~~~l~~~ld~~a~~fv~~lwr 916 (935)
+..|..+|+-|.....-+=||. +-..|+|||++.|.-|--.+.|.+ -..+|.+-.+.+-..||-
T Consensus 8 k~~li~~iq~yf~~E~d~eiG~~~Ae~LLDF~~~elGp~~YNqgv~D-A~~~~~~r~~~l~~~ly~ 72 (76)
T PF09932_consen 8 KAELIDKIQRYFAEELDEEIGDFEAEFLLDFFIEELGPHFYNQGVQD-AQAVLEERMEDLEEELYE 72 (76)
T ss_pred HHHHHHHHHHHHHHHhcCcHHHhHHHHHHHHHHHHHhHHHHHHHHHH-HHHHHHHHHHhHHHHHHH
Confidence 4557788899988888888886 456799999999987775554443 334555555555555663
No 195
>PF08926 DUF1908: Domain of unknown function (DUF1908); InterPro: IPR015022 This domain is found in microtubule-associated serine/threonine-protein kinases. ; GO: 0000287 magnesium ion binding, 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1V9V_A.
Probab=33.17 E-value=90 Score=34.34 Aligned_cols=28 Identities=29% Similarity=0.453 Sum_probs=22.2
Q ss_pred HHHHHHHHHhhh-------HHHHHHHHHHHHHHHH
Q 002335 893 SQMLELLQTILD-------DEAEMFVLKMWRMLIF 920 (935)
Q Consensus 893 ~~~~~~l~~~ld-------~~a~~fv~~lwr~li~ 920 (935)
-+|.++|+..|. -++..||.+|||.|+.
T Consensus 190 ~ElsEnLekLl~ea~erS~~~~~~~~~~lvrklL~ 224 (282)
T PF08926_consen 190 YELSENLEKLLQEAHERSESEEVAFVTQLVRKLLI 224 (282)
T ss_dssp HHHHHHHHHHHHHHHHTS-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcccCCcHHHHHHHHHHHHHHHH
Confidence 478888888887 3467799999998873
No 196
>KOG4410 consensus 5-formyltetrahydrofolate cyclo-ligase [Coenzyme transport and metabolism]
Probab=33.08 E-value=98 Score=34.04 Aligned_cols=49 Identities=12% Similarity=0.017 Sum_probs=35.9
Q ss_pred CcceeeccCCCCCCHHHHHHHHHhcCCcceeeeeccCCCCCCCceEEEEeCCHH
Q 002335 218 QTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAE 271 (935)
Q Consensus 218 ~~tlfVgnLp~~vte~~L~~lFs~~G~V~~vki~~d~~tgk~kgfgFVeF~~~e 271 (935)
.+-||++||+.++.-.+|+.-+...|.+--..-|+. +.|-||+.|.+..
T Consensus 330 ~~di~~~nl~rd~rv~dlk~~lr~~~~~pm~iswkg-----~~~k~flh~~~~~ 378 (396)
T KOG4410|consen 330 KTDIKLTNLSRDIRVKDLKSELRKRECTPMSISWKG-----HFGKCFLHFGNRK 378 (396)
T ss_pred ccceeeccCccccchHHHHHHHHhcCCCceeEeeec-----CCcceeEecCCcc
Confidence 455999999999999999999988775532222222 3577899997754
No 197
>KOG0670 consensus U4/U6-associated splicing factor PRP4 [RNA processing and modification]
Probab=32.47 E-value=10 Score=45.03 Aligned_cols=33 Identities=24% Similarity=0.127 Sum_probs=18.1
Q ss_pred hhhhhHHHHhhhcCCCChhhh------hhhcccccccch
Q 002335 820 NKKLLDAKQLIDMIPKTKEEL------FSYEINWAVYDK 852 (935)
Q Consensus 820 ~~~~~~~~~l~~~ip~~k~~l------f~~~i~w~~~~~ 852 (935)
.+.+.-++.|.+.=|-+|-.. |.|.-..-.|..
T Consensus 476 l~EleiLkKL~~AD~Edk~Hclrl~r~F~hknHLClVFE 514 (752)
T KOG0670|consen 476 LKELEILKKLNDADPEDKFHCLRLFRHFKHKNHLCLVFE 514 (752)
T ss_pred hHHHHHHHHhhccCchhhhHHHHHHHHhhhcceeEEEeh
Confidence 344444677777767666543 445545555543
No 198
>TIGR01795 CM_mono_cladeE monofunctional chorismate mutase, alpha proteobacterial type. The alpha proteobacterial members are trusted because the pathways of CM are evident and there is only one plausible CM in the genome. In S. coelicolor, however, there is another aparrent monofunctional CM.
Probab=32.41 E-value=1.2e+02 Score=27.94 Aligned_cols=39 Identities=18% Similarity=0.204 Sum_probs=27.2
Q ss_pred HHHHHHHHHhhhHH--HHHHHHHHHHHHHHHHHhhhhcccc
Q 002335 893 SQMLELLQTILDDE--AEMFVLKMWRMLIFEIKKVETGLAL 931 (935)
Q Consensus 893 ~~~~~~l~~~ld~~--a~~fv~~lwr~li~e~~~~~~g~~~ 931 (935)
++++..+.....+. -..|+..||++||=|+.+.+..++.
T Consensus 51 ~~vl~~~~~~a~~~gl~p~~~e~i~~~i~~esir~q~~~~~ 91 (94)
T TIGR01795 51 DYQIARLRRLAIDAGLDPEFAEKFLNFIVTEVIKHHERIAD 91 (94)
T ss_pred HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 34444444444333 4679999999999999998877654
No 199
>PRK15313 autotransport protein MisL; Provisional
Probab=31.97 E-value=1.2e+02 Score=39.01 Aligned_cols=15 Identities=7% Similarity=0.009 Sum_probs=7.1
Q ss_pred CCceeCCeEEEEEeec
Q 002335 281 NKFNIDGQELMLKVDQ 296 (935)
Q Consensus 281 ng~~i~gr~L~V~~a~ 296 (935)
.|+.||+. ++..|..
T Consensus 770 sG~YVDsw-lQynwF~ 784 (955)
T PRK15313 770 SGAYVDTW-MLYNWFD 784 (955)
T ss_pred CcEEEeee-eeeeeec
Confidence 45566553 3444433
No 200
>KOG2072 consensus Translation initiation factor 3, subunit a (eIF-3a) [Translation, ribosomal structure and biogenesis]
Probab=31.55 E-value=4.3e+02 Score=33.56 Aligned_cols=90 Identities=31% Similarity=0.402 Sum_probs=0.0
Q ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccchhhhhhHHhhhhhHHHHHHHHhhhhhhhhhHHH
Q 002335 505 EAEREYERCLKDWEYREREREKERQYEKEKEKERERKRKKEILYDEEEDEDDSRKRWRRSVLEEKRRKRIREKEEDLADE 584 (935)
Q Consensus 505 e~e~~~~~r~r~~e~rer~r~~~re~ekerere~er~r~~e~~~~~d~e~~~~rk~~~~~~~~~R~r~r~re~~~d~~dr 584 (935)
+++..|.+.+..|+.+- +.+|-+=.||.+.|..+|...+...++.+ ..+....++.+.+..+ .+....|
T Consensus 765 ~rqs~~~e~~~~~ea~l---eaer~rl~erk~~R~eerk~~~~re~EEE-------r~Rr~EEe~~ae~~ee-~~e~akr 833 (988)
T KOG2072|consen 765 ERQSEYEEKLKQFEARL---EAERNRLAERKRARIEERKQAYYREIEEE-------RARREEEEANAERQEE-AAERAKR 833 (988)
T ss_pred hhHHHHHHHHHHHHHHH---HHHHhHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHH-HHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 002335 585 VREEEEIAVAKRRAEEEQLQQ 605 (935)
Q Consensus 585 ~~e~~E~~~~~~~~~ee~~~~ 605 (935)
-.+++|++......+.....+
T Consensus 834 ~~~eRe~e~~~ak~ekqr~re 854 (988)
T KOG2072|consen 834 TEEEREIENRVAKKEKQRQRE 854 (988)
T ss_pred HHHHHHHHHHHHHHHHHHhhc
No 201
>KOG4019 consensus Calcineurin-mediated signaling pathway inhibitor DSCR1 [Signal transduction mechanisms; General function prediction only]
Probab=31.51 E-value=56 Score=33.80 Aligned_cols=76 Identities=14% Similarity=0.086 Sum_probs=54.1
Q ss_pred CCcceeeccCCCCCCH-----HHHHHHHHhcCCcceeeeeccCCCCCCCceEEEEeCCHHHHHHHHHHhCCceeCCe-EE
Q 002335 217 PQTKVYVGKIAPTADS-----DFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQ-EL 290 (935)
Q Consensus 217 ~~~tlfVgnLp~~vte-----~~L~~lFs~~G~V~~vki~~d~~tgk~kgfgFVeF~~~e~A~~Al~~Lng~~i~gr-~L 290 (935)
..+++++++|...+-. .....+|..|-...-..+++. .++--|.|.++..|..|...+++..|.|. .|
T Consensus 9 lp~~~~~c~i~~~VF~~~~~k~~~~~lFrq~n~~~~fq~lrs------frrvRi~f~~p~~a~~a~i~~~~~~f~~~~~~ 82 (193)
T KOG4019|consen 9 LPTAIIACDIHEEVFVNREDKALFENLFRQINEDATFQLLRS------FRRVRINFSNPEAAADARIKLHSTSFNGKNEL 82 (193)
T ss_pred ccceeeeecccHHhhccHHHHHHHHhHHhhhCcchHHHHHHh------hceeEEeccChhHHHHHHHHhhhcccCCCceE
Confidence 3566888888765433 245566666666555555543 24455799999999999999999999988 77
Q ss_pred EEEeechh
Q 002335 291 MLKVDQAT 298 (935)
Q Consensus 291 ~V~~a~~~ 298 (935)
..-+++..
T Consensus 83 k~yfaQ~~ 90 (193)
T KOG4019|consen 83 KLYFAQPG 90 (193)
T ss_pred EEEEccCC
Confidence 77777664
No 202
>PRK06285 chorismate mutase; Provisional
Probab=31.33 E-value=2.1e+02 Score=26.45 Aligned_cols=24 Identities=21% Similarity=0.243 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHHHhhhhcccc
Q 002335 908 EMFVLKMWRMLIFEIKKVETGLAL 931 (935)
Q Consensus 908 ~~fv~~lwr~li~e~~~~~~g~~~ 931 (935)
..||..||+.||-++...+..++.
T Consensus 72 ~~~i~~if~~Ii~~s~~~Q~~~~~ 95 (96)
T PRK06285 72 ENIGLKIMKILMEHSKELQKEYLE 95 (96)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhc
Confidence 578999999999998888876654
No 203
>KOG0334 consensus RNA helicase [RNA processing and modification]
Probab=30.72 E-value=43 Score=42.97 Aligned_cols=9 Identities=33% Similarity=0.515 Sum_probs=4.7
Q ss_pred CcccCCCCh
Q 002335 718 PLVPIDYST 726 (935)
Q Consensus 718 ~lvp~~y~~ 726 (935)
.|+.++++.
T Consensus 310 ~~~~~~~S~ 318 (997)
T KOG0334|consen 310 NLIQVDHSK 318 (997)
T ss_pred ceeeccccc
Confidence 555555543
No 204
>PF09707 Cas_Cas2CT1978: CRISPR-associated protein (Cas_Cas2CT1978); InterPro: IPR010152 Clustered Regularly Interspaced Short Palindromic Repeats (CRISPR) are a family of DNA direct repeats separated by regularly sized non-repetitive spacer sequences that are found in most bacterial and archaeal genomes []. CRISPRs appear to provide acquired resistance against bacteriophages, possibly acting with an RNA interference-like mechanism to inhibit gene functions of invasive DNA elements [, ]. Differences in the number and type of spacers between CRISPR repeats correlate with phage sensitivity. It is thought that following phage infection, bacteria integrate new spacers derived from phage genomic sequences, and that the removal or addition of particular spacers modifies the phage-resistance phenotype of the cell. Therefore, the specificity of CRISPRs may be determined by spacer-phage sequence similarity. In addition, there are many protein families known as CRISPR-associated sequences (Cas), which are encoded in the vicinity of CRISPR loci []. CRISPR/cas gene regions can be quite large, with up to 20 different, tandem-arranged cas genes next to a CRISPR cluster or filling the region between two repeat clusters. Cas genes and CRISPRs are found on mobile genetic elements such as plasmids, and have undergone extensive horizontal transfer. Cas proteins are thought to be involved in the propagation and functioning of CRISPRs. Some Cas proteins show similarity to helicases and repair proteins, although the functions of most are unknown. Cas families can be divided into subtypes according to operon organisation and phylogeny. This entry represents a minor branch of the Cas2 family of CRISPR-associated protein which are found in IPR003799 from INTERPRO. Cas2 is one of four protein families (Cas1 to Cas4) that are associated with CRISPR elements and always occur near a repeat cluster, usually in the order cas3-cas4-cas1-cas2. The function of Cas2 (and Cas1) is unknown. Cas3 proteins appear to be helicases while Cas4 proteins resemble RecB-type exonucleases, suggesting that these genes are involved in DNA metabolism or gene expression [].
Probab=30.32 E-value=75 Score=28.99 Aligned_cols=49 Identities=18% Similarity=0.252 Sum_probs=35.3
Q ss_pred CcceeeccCCCCCCHHHHHHHHHhcCCcceeeeeccCCCCCCCceEEEEeCC
Q 002335 218 QTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFES 269 (935)
Q Consensus 218 ~~tlfVgnLp~~vte~~L~~lFs~~G~V~~vki~~d~~tgk~kgfgFVeF~~ 269 (935)
..-+||||++..+.+.-...+...++.-.-+-+..+ ....||+|.++.+
T Consensus 25 ~~GVyVg~~s~rVRe~lW~~v~~~~~~G~a~m~~~~---~neqG~~~~t~G~ 73 (86)
T PF09707_consen 25 RPGVYVGNVSARVRERLWERVTEWIGDGSAVMVWSD---NNEQGFDFRTLGD 73 (86)
T ss_pred CCCcEEcCCCHHHHHHHHHHHHhhCCCccEEEEEcc---CCCCCEEEEEeCC
Confidence 456999999999998888888776655444444443 2277999988743
No 205
>KOG3054 consensus Uncharacterized conserved protein [Function unknown]
Probab=30.21 E-value=1.6e+02 Score=31.90 Aligned_cols=7 Identities=29% Similarity=0.662 Sum_probs=4.1
Q ss_pred CCCcccC
Q 002335 716 MRPLVPI 722 (935)
Q Consensus 716 ~r~lvp~ 722 (935)
+-|.|||
T Consensus 211 ~nKvV~l 217 (299)
T KOG3054|consen 211 KNKVVPL 217 (299)
T ss_pred hcCeeeH
Confidence 4456666
No 206
>PF02607 B12-binding_2: B12 binding domain; InterPro: IPR003759 Cobalamin-dependent methionine synthase (2.1.1.13 from EC) is a large modular protein that catalyses methyl transfer from methyltetrahydrofolate (CH3-H4folate) to homocysteine. During the catalytic cycle, it supports three distinct methyl transfer reactions, each involving the cobalamin (vitamin B12) cofactor and a substrate bound to its own functional unit []. The cobalamin cofactor plays an essential role in this reaction, accepting the methyl group from CH3-H4folate to form methylcob(III)alamin, and in turn donating the methyl group to homocysteine to generate methionine and cob(I)alamin. Methionine synthase is a large enzyme composed of four structurally and functionally distinct modules: the first two modules bind homocysteine and CH3-H4folate, the third module binds the cobalamin cofactor and the C-terminal module binds S-adenosylmethionine. The cobalamin-binding module is composed of two structurally distinct domains: a 4-helical bundle cap domain (residues 651-740 in the Escherichia coli enzyme) and an alpha/beta B12-binding domain (residues 741-896) (IPR006158 from INTERPRO). The 4-helical bundle forms a cap over the alpha/beta domain, which acts to shield the methyl ligand of cobalamin from solvent []. Furthermore, in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO). The alpha/beta domain is a common cobalamin-binding motif, whereas the 4-helical bundle domain with its methyl cap is a distinctive feature of methionine synthases. This entry represents the 4-helical bundle cap domain. This domain is also present in other shorter proteins that bind to B12, and is always found N terminus to the alpha/beta B12-binding domain.; GO: 0008705 methionine synthase activity, 0031419 cobalamin binding, 0046872 metal ion binding, 0009086 methionine biosynthetic process; PDB: 3EZX_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 2I2X_P.
Probab=30.07 E-value=1.4e+02 Score=25.91 Aligned_cols=51 Identities=12% Similarity=0.319 Sum_probs=40.6
Q ss_pred hHHHHHHHhhcCcchhHHHHHHHHhhhccCCHHHHHHH-HHHhhhHHHHHHHHHHHH
Q 002335 861 PWISKKITEFLGEEETTLVDYIVSSTQDHVKASQMLEL-LQTILDDEAEMFVLKMWR 916 (935)
Q Consensus 861 pwi~kki~e~lG~ee~~lv~~i~~~l~~~~~~~~~~~~-l~~~ld~~a~~fv~~lwr 916 (935)
+++.+-+.-++....+.+.+++-..|....++..++.+ |.++|.+ |..+|.
T Consensus 3 ~~~~~l~~al~~~d~~~~~~~~~~~l~~g~~~~~i~~~~l~p~m~~-----iG~~w~ 54 (79)
T PF02607_consen 3 ELIERLLDALLAGDEEEAEALLEEALAQGYPPEDIIEEILMPAMEE-----IGELWE 54 (79)
T ss_dssp HHHHHHHHHHHTT-CCHHHHHHHHHHHCSSSTTHHHHHTHHHHHHH-----HHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHH-----HHHHHh
Confidence 56677777778888888999999999887899999987 8888876 666775
No 207
>cd07347 harmonin_N_like N-terminal protein-binding module of harmonin and similar domains. This domain is found in harmonin, and similar proteins such as delphilin, and whirlin. These are postsynaptic density-95/discs-large/ZO-1 (PDZ) domain-containing scaffold proteins. Harmonin and whirlin are organizers of the Usher protein network of the inner ear and the retina, delphilin is found at the cerebellar parallel fiber-Purkinje cell synapses. This harmonin_N_like domain is found in either one or two copies. Harmonin contains a single copy, which is found at its N-terminus and binds specifically to a short internal peptide fragment of the cadherin 23 cytoplasmic domain; cadherin 23 is a component of the Usher protein network. Whirlin contains two copies of the harmonin_N_like domain; the first of these has been assayed for interaction with the cytoplasmic domain of cadherin 23 and no interaction could be detected.
Probab=29.61 E-value=1.6e+02 Score=26.36 Aligned_cols=60 Identities=18% Similarity=0.281 Sum_probs=43.8
Q ss_pred hhHHHHHHHhhcCcchhHHHHHHHHhhhccCCHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Q 002335 860 RPWISKKITEFLGEEETTLVDYIVSSTQDHVKASQMLELLQTILDDEAEMFVLKMWRMLI 919 (935)
Q Consensus 860 ~pwi~kki~e~lG~ee~~lv~~i~~~l~~~~~~~~~~~~l~~~ld~~a~~fv~~lwr~li 919 (935)
..=+..|+..+|-..|-.-+-+.++....+.+-..|+-.|..+||.-|.--+...-|.||
T Consensus 5 ~r~f~~q~~~LL~~~Er~~~~~~L~~Y~~~~~Vd~LV~~L~~vLdtPaK~~Ll~~iR~lI 64 (78)
T cd07347 5 AREFSQQVDHLLTDAEREQVTRALERYHQERNVDDLVRDLYLVLDTPAKLPLLQFLRQVI 64 (78)
T ss_pred HHHHHHHHHHHCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHcCcHhHHHHHHHHHHHc
Confidence 445677888899666655555555555566699999999999999999866555555555
No 208
>PF10654 DUF2481: Protein of unknown function (DUF2481) ; InterPro: IPR018916 This entry is represented by Bacteriophage A500, Gp59. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=28.06 E-value=85 Score=29.95 Aligned_cols=43 Identities=14% Similarity=0.393 Sum_probs=36.7
Q ss_pred HHHHHHHHhhhccCCHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Q 002335 877 TLVDYIVSSTQDHVKASQMLELLQTILDDEAEMFVLKMWRMLI 919 (935)
Q Consensus 877 ~lv~~i~~~l~~~~~~~~~~~~l~~~ld~~a~~fv~~lwr~li 919 (935)
.+|.||++.=..+.+-..|+.+|...+.++++.=+...|+..|
T Consensus 14 eIIsyl~n~dl~~~~~k~LqkeLn~Lm~~nTEeK~kt~~~kt~ 56 (126)
T PF10654_consen 14 EIISYLVNNDLSFSKRKELQKELNQLMNENTEEKMKTYWTKTF 56 (126)
T ss_pred HHHHHHHhCCCChHHHHHHHHHHHHHHhcchHHHHHHHHHHHH
Confidence 3667777777778888999999999999999999999998765
No 209
>KOG4840 consensus Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]
Probab=27.70 E-value=1e+02 Score=33.21 Aligned_cols=86 Identities=12% Similarity=0.186 Sum_probs=53.7
Q ss_pred CcceeeccCCCCCCHHHHHHHHHhcCCcceeeeeccCCCCCCCceEEEEe-CCHHHHHHHHHHhCCceeCCeEEEEEeec
Q 002335 218 QTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEF-ESAEGVLRALRLLNKFNIDGQELMLKVDQ 296 (935)
Q Consensus 218 ~~tlfVgnLp~~vte~~L~~lFs~~G~V~~vki~~d~~tgk~kgfgFVeF-~~~e~A~~Al~~Lng~~i~gr~L~V~~a~ 296 (935)
...||||+|....--......+..+-.=..|.++.-.-....-|||.... .+.++...+|..+.+..+-...+.|..+.
T Consensus 37 ~~vvfiGGLgdgLl~~~y~~~L~~~lde~~wslVq~q~~Ssy~G~Gt~slk~D~edl~~l~~Hi~~~~fSt~vVL~GhST 116 (299)
T KOG4840|consen 37 VKVVFIGGLGDGLLICLYTTMLNRYLDENSWSLVQPQLRSSYNGYGTFSLKDDVEDLKCLLEHIQLCGFSTDVVLVGHST 116 (299)
T ss_pred EEEEEEcccCCCccccccHHHHHHHHhhccceeeeeeccccccccccccccccHHHHHHHHHHhhccCcccceEEEecCc
Confidence 57899999988755443334444333333455554322222335664443 46778888888887777777778888888
Q ss_pred hhHHHHH
Q 002335 297 ATREYLE 303 (935)
Q Consensus 297 ~~~~~l~ 303 (935)
.++..+-
T Consensus 117 GcQdi~y 123 (299)
T KOG4840|consen 117 GCQDIMY 123 (299)
T ss_pred cchHHHH
Confidence 8876543
No 210
>KOG2689 consensus Predicted ubiquitin regulatory protein [Posttranslational modification, protein turnover, chaperones]
Probab=26.80 E-value=4.8e+02 Score=28.91 Aligned_cols=15 Identities=20% Similarity=0.100 Sum_probs=7.3
Q ss_pred hhHHHHHHHHHHHHH
Q 002335 580 DLADEVREEEEIAVA 594 (935)
Q Consensus 580 d~~dr~~e~~E~~~~ 594 (935)
.+++|-+++-|.+.+
T Consensus 157 eaRqRV~~~Ie~DKa 171 (290)
T KOG2689|consen 157 EARQRVLRQIERDKA 171 (290)
T ss_pred HHHHHHHHHHHHhHH
Confidence 344555555554444
No 211
>PF15473 PCNP: PEST, proteolytic signal-containing nuclear protein family
Probab=26.07 E-value=24 Score=35.07 Aligned_cols=19 Identities=32% Similarity=0.648 Sum_probs=14.5
Q ss_pred CCccccCccCCCCCCcchh
Q 002335 693 GKRTAVPSVFHVEDDDDAD 711 (935)
Q Consensus 693 ~~~~~~~~vf~~~dd~~~~ 711 (935)
.++.+|+.|||.+||+|..
T Consensus 87 ~~~~~va~~Fn~d~d~e~e 105 (150)
T PF15473_consen 87 PKKLSVAAVFNEDDDSEPE 105 (150)
T ss_pred CCcchhhhhhccccccChh
Confidence 3577899999988776644
No 212
>PF09770 PAT1: Topoisomerase II-associated protein PAT1; InterPro: IPR019167 Proteins in this entry are necessary for accurate chromosome transmission during cell division []. ; PDB: 2XER_C 2XES_B 2XEQ_D.
Probab=24.81 E-value=24 Score=45.06 Aligned_cols=13 Identities=23% Similarity=0.281 Sum_probs=0.0
Q ss_pred hhHHHHHHHHhhh
Q 002335 875 ETTLVDYIVSSTQ 887 (935)
Q Consensus 875 e~~lv~~i~~~l~ 887 (935)
-.+||+-|-+.|.
T Consensus 762 q~~lv~~vrd~v~ 774 (808)
T PF09770_consen 762 QQILVDEVRDRVM 774 (808)
T ss_dssp -------------
T ss_pred ccccccccccccc
Confidence 3445555544443
No 213
>KOG4483 consensus Uncharacterized conserved protein [Function unknown]
Probab=24.70 E-value=1.6e+02 Score=34.05 Aligned_cols=56 Identities=13% Similarity=0.071 Sum_probs=46.1
Q ss_pred CCcceeeccCCCCCCHHHHHHHHHhcCC-cceeeeeccCCCCCCCceEEEEeCCHHHHHHHHHH
Q 002335 217 PQTKVYVGKIAPTADSDFVLSVLKVCGT-VKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRL 279 (935)
Q Consensus 217 ~~~tlfVgnLp~~vte~~L~~lFs~~G~-V~~vki~~d~~tgk~kgfgFVeF~~~e~A~~Al~~ 279 (935)
-...|=|.+++.....++|..+|+.||. -..|+++-| ..+|..|.+...|..||..
T Consensus 390 lpHVlEIydfp~efkteDll~~f~~yq~kgfdIkWvDd-------thalaVFss~~~AaeaLt~ 446 (528)
T KOG4483|consen 390 LPHVLEIYDFPDEFKTEDLLKAFETYQNKGFDIKWVDD-------THALAVFSSVNRAAEALTL 446 (528)
T ss_pred ccceeEeccCchhhccHHHHHHHHHhhcCCceeEEeec-------ceeEEeecchHHHHHHhhc
Confidence 3567889999999999999999999974 345666666 6899999999999999975
No 214
>KOG4008 consensus rRNA processing protein RRP7 [RNA processing and modification]
Probab=24.58 E-value=2.1e+02 Score=30.98 Aligned_cols=34 Identities=6% Similarity=0.181 Sum_probs=30.0
Q ss_pred CCCCcceeeccCCCCCCHHHHHHHHHhcCCccee
Q 002335 215 EKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSW 248 (935)
Q Consensus 215 ~~~~~tlfVgnLp~~vte~~L~~lFs~~G~V~~v 248 (935)
.....+||+-|||..++++.|..+.+.+|.|..+
T Consensus 37 ~~eKd~lfl~Nvp~~~tee~lkr~vsqlg~vq~~ 70 (261)
T KOG4008|consen 37 SNEKDCLFLVNVPLLSTEEHLKRFVSQLGHVQEL 70 (261)
T ss_pred cccccceeeecccccccHHHHHHHHHHhhhhhhe
Confidence 4557899999999999999999999999977664
No 215
>KOG4368 consensus Predicted RNA binding protein, contains SWAP, RPR and G-patch domains [General function prediction only]
Probab=23.49 E-value=1.2e+03 Score=28.69 Aligned_cols=10 Identities=40% Similarity=0.458 Sum_probs=5.5
Q ss_pred HHHHHHHHHH
Q 002335 377 LEKLTCMVEE 386 (935)
Q Consensus 377 ~e~i~~~iee 386 (935)
-|+++..+++
T Consensus 553 sErl~~aveA 562 (757)
T KOG4368|consen 553 SERLLAAVEA 562 (757)
T ss_pred HHHHHHHHHH
Confidence 4556665554
No 216
>COG4342 Uncharacterized protein conserved in archaea [Function unknown]
Probab=23.34 E-value=1.8e+02 Score=31.72 Aligned_cols=46 Identities=28% Similarity=0.477 Sum_probs=31.7
Q ss_pred hhhhhHHHHHHHhhcCcchhHHHHHHHHhhhccCCHHHHHHHHHHhhhH
Q 002335 857 ERMRPWISKKITEFLGEEETTLVDYIVSSTQDHVKASQMLELLQTILDD 905 (935)
Q Consensus 857 ~~~~pwi~kki~e~lG~ee~~lv~~i~~~l~~~~~~~~~~~~l~~~ld~ 905 (935)
.-||-|+..|+.| ||+.++ |||||..+-..|..-+.- .+|.+.-|+
T Consensus 228 kyiRkwv~nkmle-lgvP~~-VvdFIqGrk~~~V~~rHY-~nL~~~Ake 273 (291)
T COG4342 228 KYIRKWVYNKMLE-LGVPED-VVDFIQGRKQSRVGTRHY-ANLLGQAKE 273 (291)
T ss_pred HHHHHHHHHHHHH-cCCcHH-HHHHHHccCcchhHHHHH-HHHHHHHHH
Confidence 3489999999998 588664 789999987777543332 344444443
No 217
>PRK09239 chorismate mutase; Provisional
Probab=23.03 E-value=3.6e+02 Score=25.44 Aligned_cols=24 Identities=21% Similarity=0.277 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHHHHhhhhccc
Q 002335 907 AEMFVLKMWRMLIFEIKKVETGLA 930 (935)
Q Consensus 907 a~~fv~~lwr~li~e~~~~~~g~~ 930 (935)
-..|+..||++||=|+.+.+.-+.
T Consensus 74 ~p~~~~~i~~~ii~esir~q~~i~ 97 (104)
T PRK09239 74 DPDFAEKFLNFIIKEVIRHHERIA 97 (104)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467999999999999888776554
No 218
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=22.95 E-value=87 Score=32.67 Aligned_cols=65 Identities=15% Similarity=0.217 Sum_probs=46.3
Q ss_pred CCCCcceeeccCCCCCCHHHHHHHHHhcCCcceeeeeccCCCCCCCceEEEEeCCHHHHHHHHHH
Q 002335 215 EKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRL 279 (935)
Q Consensus 215 ~~~~~tlfVgnLp~~vte~~L~~lFs~~G~V~~vki~~d~~tgk~kgfgFVeF~~~e~A~~Al~~ 279 (935)
......+++++++..+....+..+|..+|.+....+...........+.|+.+.....+..++..
T Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 286 (306)
T COG0724 222 LEKSDNLYVGNLPLKTAEEELADLFKSRGDIVRASLPPSKDGKIPKSRSFVGNEASKDALESNSR 286 (306)
T ss_pred ccccceeeccccccccchhHHHHhccccccceeeeccCCCCCcccccccccchhHHHhhhhhhcc
Confidence 34567899999999999999999999999997777665543333445555555555555444443
No 219
>TIGR01797 CM_P_1 chorismate mutase domain of proteobacterial P-protein, clade 1. This model represents the chorismate mutase domain of the gamma and beta proteobacterial "P-protein" which contains an N-terminal chorismate mutase domain and a C-terminal prephenate dehydratase domain.
Probab=22.86 E-value=3.7e+02 Score=23.98 Aligned_cols=63 Identities=16% Similarity=0.262 Sum_probs=33.6
Q ss_pred HHHHHHhhcCcchhHHHHHHHHhhhccC---CHHHHHHHHHHhhhHH-----HHHHHHHHHHHHHHHHHhh
Q 002335 863 ISKKITEFLGEEETTLVDYIVSSTQDHV---KASQMLELLQTILDDE-----AEMFVLKMWRMLIFEIKKV 925 (935)
Q Consensus 863 i~kki~e~lG~ee~~lv~~i~~~l~~~~---~~~~~~~~l~~~ld~~-----a~~fv~~lwr~li~e~~~~ 925 (935)
|...|+++|+.--.++.+.---+...+. +|..--.-|+.+.... -..|+..||+.||-++...
T Consensus 11 ID~~lv~Ll~~R~~~~~~i~~~K~~~~~~v~dp~RE~~vl~~~~~~~~~~~l~~~~i~~if~~ii~~S~~~ 81 (83)
T TIGR01797 11 IDEKLLKLLAERRELAFEVGKSKLLSHRPVRDIERERDLLQRLITLGKAYHLDAHYITRLFQLIIEDSVLT 81 (83)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCChHHHHHHHHHHHHHhhhCCCCHHHHHHHHHHHHHHHHHh
Confidence 4556666666433333333222222222 5544444444444433 2579999999999766544
No 220
>PF04652 DUF605: Vta1 like; InterPro: IPR006745 This family contains proteins from the Eukaryota; functionally they are uncharacterised.; PDB: 2RKK_B 2RKL_B 3MHV_A.
Probab=22.27 E-value=29 Score=40.01 Aligned_cols=8 Identities=25% Similarity=0.443 Sum_probs=3.0
Q ss_pred EeCCHHHH
Q 002335 266 EFESAEGV 273 (935)
Q Consensus 266 eF~~~e~A 273 (935)
.|+|...|
T Consensus 361 ~feDv~tA 368 (380)
T PF04652_consen 361 NFEDVPTA 368 (380)
T ss_dssp TTT-HHHH
T ss_pred cccccccc
Confidence 34444443
No 221
>PRK11558 putative ssRNA endonuclease; Provisional
Probab=21.57 E-value=1.2e+02 Score=28.33 Aligned_cols=50 Identities=20% Similarity=0.242 Sum_probs=34.6
Q ss_pred CcceeeccCCCCCCHHHHHHHHHhcCCcceeeeeccCCCCCCCceEEEEeCCH
Q 002335 218 QTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESA 270 (935)
Q Consensus 218 ~~tlfVgnLp~~vte~~L~~lFs~~G~V~~vki~~d~~tgk~kgfgFVeF~~~ 270 (935)
..-+|||+++..+.+.-...+-..++.-.-+-+..+ ..-.||+|.++.+.
T Consensus 27 ~~GVyVg~~S~rVRd~lW~~v~~~~~~G~avmv~~~---~~eqG~~~~t~G~~ 76 (97)
T PRK11558 27 RAGVYVGDVSRRIREMIWQQVTQLAEEGNVVMAWAT---NTESGFEFQTFGEN 76 (97)
T ss_pred CCCcEEcCCCHHHHHHHHHHHHHhCCCCcEEEEEcC---CCCCCcEEEecCCC
Confidence 466999999999988877777776765333333332 34459999988763
No 222
>PRK12270 kgd alpha-ketoglutarate decarboxylase; Reviewed
Probab=20.56 E-value=3.2e+02 Score=35.70 Aligned_cols=18 Identities=11% Similarity=0.290 Sum_probs=11.6
Q ss_pred HHHhhhcCCCChhhhhhh
Q 002335 826 AKQLIDMIPKTKEELFSY 843 (935)
Q Consensus 826 ~~~l~~~ip~~k~~lf~~ 843 (935)
++.+++.-|+..+=+|..
T Consensus 1152 l~~~l~~ypna~e~~wvQ 1169 (1228)
T PRK12270 1152 LREALARYPNATEVVWVQ 1169 (1228)
T ss_pred HHHHHHhCCCcceeEEec
Confidence 566777777766655544
Done!